BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780861|ref|YP_003065274.1| NADH dehydrogenase subunit I
[Candidatus Liberibacter asiaticus str. psy62]
         (163 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|222625883|gb|EEE60015.1| hypothetical protein OsJ_12764 [Oryza sativa Japonica Group]
          Length = 815

 Score =  209 bits (531), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 117/161 (72%), Positives = 131/161 (81%), Gaps = 1/161 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           +F  +++ LFL E V    L L+YFF+   TINYPFEKG  SPRFRGEHALRRYP GEER
Sbjct: 656 VFERSINTLFLTEMVRGLMLTLKYFFEKNVTINYPFEKGPLSPRFRGEHALRRYPTGEER 715

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCEAICPAQAITIE+  R  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGP
Sbjct: 716 CIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 774

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           NFEFATET +EL YDKE+LL NGDRWE+EI  N+ ++S YR
Sbjct: 775 NFEFATETHEELLYDKEKLLENGDRWETEIAANLESESLYR 815


>gi|15219265|ref|NP_178022.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial (TYKY)
           [Arabidopsis thaliana]
 gi|297842689|ref|XP_002889226.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           [Arabidopsis lyrata subsp. lyrata]
 gi|3929364|sp|Q42599|NDUS8_ARATH RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           8, mitochondrial; AltName: Full=Complex I-23kD;
           Short=CI-23kD; AltName: Full=Complex I-28.5kD;
           Short=CI-28.5kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 23 kDa subunit; Flags: Precursor
 gi|666977|emb|CAA59061.1| NADH dehydrogenase [Arabidopsis thaliana]
 gi|3152573|gb|AAC17054.1| Match to NADH:ubiquinone oxidoreductase gb|X84318 from A.thaliana.
           ESTs gb|Z27005, gb|T04711, gb|T45078 and gb|Z28689 come
           from this gene [Arabidopsis thaliana]
 gi|15081697|gb|AAK82503.1| At1g79010/YUP8H12R_21 [Arabidopsis thaliana]
 gi|18252265|gb|AAL62013.1| At1g79010/YUP8H12R_21 [Arabidopsis thaliana]
 gi|21593880|gb|AAM65847.1| NADH dehydrogenase, putative [Arabidopsis thaliana]
 gi|110740838|dbj|BAE98516.1| hypothetical protein [Arabidopsis thaliana]
 gi|297335067|gb|EFH65485.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           [Arabidopsis lyrata subsp. lyrata]
 gi|332198072|gb|AEE36193.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8 [Arabidopsis
           thaliana]
          Length = 222

 Score =  199 bits (505), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 117/161 (72%), Positives = 131/161 (81%), Gaps = 1/161 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           +F  +++ LFL E V    L L+YFF  K TINYPFEKG  SPRFRGEHALRRYP GEER
Sbjct: 63  VFERSINTLFLTEMVRGLSLTLKYFFDPKVTINYPFEKGPLSPRFRGEHALRRYPTGEER 122

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCEA+CPAQAITIE+  R  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGP
Sbjct: 123 CIACKLCEAVCPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 181

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           NFEFATET +EL YDKE+LL NGDRWE+EI  N+ ++S YR
Sbjct: 182 NFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 222


>gi|255536839|ref|XP_002509486.1| NADH-ubiquinone oxidoreductase 1, chain, putative [Ricinus
           communis]
 gi|223549385|gb|EEF50873.1| NADH-ubiquinone oxidoreductase 1, chain, putative [Ricinus
           communis]
          Length = 222

 Score =  198 bits (502), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 119/162 (73%), Positives = 132/162 (81%), Gaps = 1/162 (0%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
            IF  +++ LFL E V    L L+YFF+ K TINYPFEKG  SPRFRGEHALRRYP GEE
Sbjct: 62  SIFERSINTLFLTEMVRGLSLTLKYFFEKKVTINYPFEKGPLSPRFRGEHALRRYPTGEE 121

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLCEAICPAQAITIE+  R  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEG
Sbjct: 122 RCIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 180

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           PNFEFATET +EL YDKE+LL NGDRWE+EI  N+ ++S YR
Sbjct: 181 PNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 222


>gi|77416915|gb|ABA81853.1| NADH:ubiquinone oxidoreductase-like [Solanum tuberosum]
          Length = 229

 Score =  197 bits (501), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 117/162 (72%), Positives = 131/162 (80%), Gaps = 1/162 (0%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
            +F  +++ LFL E V    L L+YFF+ K TINYPFEKG  SPRFRGEHALRRY  GEE
Sbjct: 69  SVFERSINTLFLTEMVRGLMLTLKYFFEKKVTINYPFEKGPLSPRFRGEHALRRYATGEE 128

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLCEAICPAQAITIE+  R  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEG
Sbjct: 129 RCIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 187

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           PNFEFATET +EL YDKE+LL NGDRWE+EI  N+ ++S YR
Sbjct: 188 PNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 229


>gi|114707377|ref|ZP_01440274.1| NADH dehydrogenase subunit I [Fulvimarina pelagi HTCC2506]
 gi|114537258|gb|EAU40385.1| NADH dehydrogenase subunit I [Fulvimarina pelagi HTCC2506]
          Length = 163

 Score =  196 bits (499), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 131/163 (80%), Positives = 139/163 (85%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M      V  LFL EFV AF L LRYFF  K T+NYPFEKG  SPRFRGEHALRRYPNG+
Sbjct: 1   MSALAQTVRSLFLIEFVQAFGLALRYFFAPKATVNYPFEKGPVSPRFRGEHALRRYPNGQ 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVE
Sbjct: 61  ERCIACKLCEAICPAQAITIEAGPRQNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 120

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEFATETR+ELYYDKE+LL NGDRWE EI RNI  D+PYR
Sbjct: 121 GPNFEFATETREELYYDKEKLLANGDRWEREIARNIALDAPYR 163


>gi|224105397|ref|XP_002313797.1| predicted protein [Populus trichocarpa]
 gi|222850205|gb|EEE87752.1| predicted protein [Populus trichocarpa]
          Length = 222

 Score =  196 bits (498), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 117/162 (72%), Positives = 132/162 (81%), Gaps = 1/162 (0%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
            +F  +++ LFL E V    L L+YFF+ K TINYPFEKG  SPRFRGEHALRRYP GEE
Sbjct: 62  SVFERSINTLFLTEMVRGLSLTLKYFFEPKVTINYPFEKGPLSPRFRGEHALRRYPTGEE 121

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLCEAICPAQAITIE+  R  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEG
Sbjct: 122 RCIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 180

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           PNFEF+TET +EL YDKE+LL NGDRWE+EI  N+ ++S YR
Sbjct: 181 PNFEFSTETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 222


>gi|6226880|sp|P80269|NDUS8_SOLTU RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           8, mitochondrial; AltName: Full=Complex I-23kD;
           Short=CI-23kD; AltName: Full=Complex I-28.5kD;
           Short=CI-28.5kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 23 kDa subunit; Flags: Precursor
 gi|668985|emb|CAA59062.1| NADH dehydrogenase [Solanum tuberosum]
          Length = 229

 Score =  196 bits (498), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 117/162 (72%), Positives = 131/162 (80%), Gaps = 1/162 (0%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
            +F  +++ LFL E V    L L+YFF+ K TINYPFEKG  SPRFRGEHALRRY  GEE
Sbjct: 69  SVFERSINTLFLTEMVRGLMLTLKYFFEKKVTINYPFEKGPLSPRFRGEHALRRYATGEE 128

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLCEAICPAQAITIE+  R  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEG
Sbjct: 129 RCIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 187

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           PNFEFATET +EL YDKE+LL NGDRWE+EI  N+ ++S YR
Sbjct: 188 PNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 229


>gi|668987|emb|CAA59063.1| NADH dehydrogenase [Solanum tuberosum]
          Length = 229

 Score =  196 bits (497), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 116/162 (71%), Positives = 129/162 (79%), Gaps = 1/162 (0%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
            +F  +++ LFL E V    L L+YFF+ K TINYPFEKG  SPRFRGEHAL RY  GEE
Sbjct: 69  SVFERSINTLFLTEMVRGLMLTLKYFFEKKVTINYPFEKGPLSPRFRGEHALHRYATGEE 128

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLCEAICPAQAITIE+  R  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEG
Sbjct: 129 RCIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 187

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           PNFEFATET +EL YDKE+LL NGDRWE EI  N+ ++S YR
Sbjct: 188 PNFEFATETHEELLYDKEKLLENGDRWEIEIAENLRSESLYR 229


>gi|322694431|gb|EFY86261.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Metarhizium acridum
           CQMa 102]
          Length = 320

 Score =  195 bits (496), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 103/162 (63%), Positives = 121/162 (74%), Gaps = 1/162 (0%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
           +       +  L E     ++ +  FF+   TI YPFEKG  SPRFRGEHALRRYP+GEE
Sbjct: 160 KTLDRLGKYFLLTEMARGMYVLMEQFFRPPYTIYYPFEKGPISPRFRGEHALRRYPSGEE 219

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLCEAICPAQAITIE+  R   G+RRT RYDIDM KCIYCG CQE+CPVDAIVE 
Sbjct: 220 RCIACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQESCPVDAIVES 278

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           PN E+ATETR+EL Y+KE+LL+NGD+WE E+   I  D+PYR
Sbjct: 279 PNAEYATETREELLYNKEKLLSNGDKWEPELAAAIRADAPYR 320


>gi|3929358|sp|O24143|NDUS8_TOBAC RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           8, mitochondrial; AltName: Full=Complex I-23kD;
           Short=CI-23kD; AltName: Full=Complex I-28.5kD;
           Short=CI-28.5kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 23 kDa subunit; Flags: Precursor
 gi|1666177|emb|CAA70326.1| NADH dehydrogenase [Nicotiana tabacum]
          Length = 230

 Score =  195 bits (495), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 116/162 (71%), Positives = 129/162 (79%), Gaps = 1/162 (0%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
            +F   ++ LFL E V    L L+YFF+ K TINYPFEKG  SPRFRGE  LRRYP GEE
Sbjct: 70  SVFEQQINTLFLTEMVRGLMLTLKYFFEKKVTINYPFEKGPLSPRFRGEQPLRRYPTGEE 129

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLCEAICPAQAITIE+  R  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEG
Sbjct: 130 RCIACKLCEAICPAQAITIEAEAR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 188

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           PNFEFATET +EL YDKE+LL NGDRWE+EI  N+ ++S YR
Sbjct: 189 PNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 230


>gi|224077832|ref|XP_002305427.1| predicted protein [Populus trichocarpa]
 gi|222848391|gb|EEE85938.1| predicted protein [Populus trichocarpa]
          Length = 222

 Score =  195 bits (495), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 114/162 (70%), Positives = 129/162 (79%), Gaps = 1/162 (0%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
            +F  +++ LFL E V    L L+YFF+ K TINYPFEKG  S  FRGEHALRRY  GEE
Sbjct: 62  SVFERSINTLFLTEMVRGLSLTLKYFFEKKVTINYPFEKGPLSSHFRGEHALRRYHTGEE 121

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLCEAICPAQAITIE+  R  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEG
Sbjct: 122 RCIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 180

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           PNFEF TET +EL YDKE+LL+NGDRWE+EI  N+ ++S YR
Sbjct: 181 PNFEFTTETHEELLYDKEKLLDNGDRWETEIAENLRSESLYR 222


>gi|15219311|ref|NP_173114.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial,
           putative [Arabidopsis thaliana]
 gi|297844602|ref|XP_002890182.1| ATMLO14 [Arabidopsis lyrata subsp. lyrata]
 gi|9989050|gb|AAG10813.1|AC011808_1 Putative NADH-ubiquinone oxidoreductase [Arabidopsis thaliana]
 gi|16649105|gb|AAL24404.1| Putative NADH-ubiquinone oxidoreductase [Arabidopsis thaliana]
 gi|20148605|gb|AAM10193.1| putative NADH-ubiquinone oxidoreductase [Arabidopsis thaliana]
 gi|21553581|gb|AAM62674.1| NADH:ubiquinone oxidoreductase, putative [Arabidopsis thaliana]
 gi|297336024|gb|EFH66441.1| ATMLO14 [Arabidopsis lyrata subsp. lyrata]
 gi|332191363|gb|AEE29484.1| Alpha-helical ferredoxin [Arabidopsis thaliana]
          Length = 222

 Score =  194 bits (494), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 117/161 (72%), Positives = 131/161 (81%), Gaps = 1/161 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           +F  +++ LFL E V    L L+YFF  K TINYPFEKG  SPRFRGEHALRRYP GEER
Sbjct: 63  VFERSMNTLFLTEMVRGLSLTLKYFFDPKVTINYPFEKGPLSPRFRGEHALRRYPTGEER 122

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCEA+CPAQAITIE+  R  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGP
Sbjct: 123 CIACKLCEAVCPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 181

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           NFEFATET +EL YDKE+LL NGDRWE+EI  N+ ++S YR
Sbjct: 182 NFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 222


>gi|217075100|gb|ACJ85910.1| unknown [Medicago truncatula]
          Length = 222

 Score =  194 bits (492), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 116/161 (72%), Positives = 130/161 (80%), Gaps = 1/161 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           +F  +++ LFL E V    L L+YFF    TINYPFEKG  SPRFRGEHALRRYP GEER
Sbjct: 63  VFERSINTLFLTELVRGLMLTLKYFFDKNVTINYPFEKGPLSPRFRGEHALRRYPTGEER 122

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCEAICPAQAITIE+  R  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGP
Sbjct: 123 CIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 181

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           NFEF+TET +EL YDKE+LL NGDRWE+EI  N+ ++S YR
Sbjct: 182 NFEFSTETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 222


>gi|255626927|gb|ACU13808.1| unknown [Glycine max]
          Length = 222

 Score =  194 bits (492), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 118/162 (72%), Positives = 131/162 (80%), Gaps = 1/162 (0%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
            +F  +++ LFL E V    L L+YFF+ K TINYPFEKG  SPRFRGEHALRRYP GEE
Sbjct: 62  SVFERSINTLFLTEMVRGLMLTLKYFFETKVTINYPFEKGPLSPRFRGEHALRRYPTGEE 121

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLCEAICPAQAITIE+  R  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEG
Sbjct: 122 RCIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 180

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           PNFEFATET  EL YDKE+LL NGDRWE+EI  N+ ++S YR
Sbjct: 181 PNFEFATETHDELLYDKEKLLENGDRWETEIAENLRSESLYR 222


>gi|15888607|ref|NP_354288.1| NADH dehydrogenase subunit I [Agrobacterium tumefaciens str. C58]
 gi|81764054|sp|Q8UFW9|NUOI_AGRT5 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|15156329|gb|AAK87073.1| NADH ubiquinone oxidoreductase chain I [Agrobacterium tumefaciens
           str. C58]
          Length = 163

 Score =  193 bits (490), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 132/163 (80%), Positives = 144/163 (88%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M      V+ LFLKEFVGA FL +R+FFK K TINYPFEKG  SPRFRGEHALRRYPNGE
Sbjct: 1   MASLSQAVNSLFLKEFVGAIFLTMRHFFKQKATINYPFEKGPVSPRFRGEHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVE
Sbjct: 61  ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 120

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEFATETR+ELY+DK+RLL+NGDRWE EI RN+  D+PYR
Sbjct: 121 GPNFEFATETREELYFDKQRLLDNGDRWEREIARNLALDAPYR 163


>gi|325292642|ref|YP_004278506.1| NADH dehydrogenase I chain I [Agrobacterium sp. H13-3]
 gi|325060495|gb|ADY64186.1| NADH dehydrogenase I chain I [Agrobacterium sp. H13-3]
          Length = 163

 Score =  193 bits (489), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 131/163 (80%), Positives = 144/163 (88%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M      V+ LFLKEFVGA FL +R+FFK K T+NYPFEKG  SPRFRGEHALRRYPNGE
Sbjct: 1   MASLSQAVNSLFLKEFVGAIFLTMRHFFKQKATVNYPFEKGPVSPRFRGEHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVE
Sbjct: 61  ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 120

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEFATETR+ELY+DK+RLL+NGDRWE EI RN+  D+PYR
Sbjct: 121 GPNFEFATETREELYFDKQRLLDNGDRWEREIARNLALDAPYR 163


>gi|255629169|gb|ACU14929.1| unknown [Glycine max]
          Length = 222

 Score =  193 bits (489), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 117/162 (72%), Positives = 131/162 (80%), Gaps = 1/162 (0%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
            +F  +++ LFL E V    L L+YFF+ K TINYPFEKG  SPRFRGEHALRRYP GEE
Sbjct: 62  SVFERSINTLFLTEMVRGLMLTLKYFFETKVTINYPFEKGPLSPRFRGEHALRRYPTGEE 121

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLCEAICPAQAITIE+  R  DG+RRT RYDIDM KCIYCG CQEACP DAIVEG
Sbjct: 122 RCIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPGDAIVEG 180

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           PNFEFATET +EL YDKE+LL NGDRWE+EI  N+ ++S YR
Sbjct: 181 PNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 222


>gi|227821627|ref|YP_002825597.1| NADH dehydrogenase subunit I [Sinorhizobium fredii NGR234]
 gi|227340626|gb|ACP24844.1| NADH dehydrogenase, chain I [Sinorhizobium fredii NGR234]
          Length = 163

 Score =  193 bits (489), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 136/163 (83%), Positives = 144/163 (88%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M      VS LFLKEFVGAFFL +RYFF+ K T+NYPFEKG  SPRFRGEHALRRYPNGE
Sbjct: 1   MAGLSQAVSSLFLKEFVGAFFLSMRYFFRPKATLNYPFEKGPVSPRFRGEHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVE
Sbjct: 61  ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 120

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEFATETR+ELYYDKE+LL NGDRWE EI RNI  DSPYR
Sbjct: 121 GPNFEFATETREELYYDKEKLLANGDRWEREIARNIAMDSPYR 163


>gi|307301099|ref|ZP_07580868.1| NADH-quinone oxidoreductase, chain I [Sinorhizobium meliloti
           BL225C]
 gi|307317833|ref|ZP_07597271.1| NADH-quinone oxidoreductase, chain I [Sinorhizobium meliloti AK83]
 gi|306896595|gb|EFN27343.1| NADH-quinone oxidoreductase, chain I [Sinorhizobium meliloti AK83]
 gi|306904054|gb|EFN34640.1| NADH-quinone oxidoreductase, chain I [Sinorhizobium meliloti
           BL225C]
          Length = 163

 Score =  192 bits (488), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 134/163 (82%), Positives = 143/163 (87%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M      VS LFLKEFVGAF L +RYFF+ K T+NYPFEKG  SPRFRGEHALRRYPNGE
Sbjct: 1   MAGLSNAVSSLFLKEFVGAFLLSMRYFFRPKATLNYPFEKGPVSPRFRGEHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVE
Sbjct: 61  ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 120

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEF+TETR+ELYYDKE+LL NGDRWE EI RNI  DSPYR
Sbjct: 121 GPNFEFSTETREELYYDKEKLLANGDRWEREIARNIAMDSPYR 163


>gi|15965027|ref|NP_385380.1| NADH dehydrogenase subunit I [Sinorhizobium meliloti 1021]
 gi|81634769|sp|Q92QP4|NUOI1_RHIME RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName:
           Full=NADH dehydrogenase I subunit I 1; AltName:
           Full=NDH-1 subunit I 1
 gi|15074206|emb|CAC45853.1| Probable NADH-ubiquinone oxidoreductase chain I [Sinorhizobium
           meliloti 1021]
          Length = 164

 Score =  192 bits (487), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 134/163 (82%), Positives = 143/163 (87%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M      VS LFLKEFVGAF L +RYFF+ K T+NYPFEKG  SPRFRGEHALRRYPNGE
Sbjct: 2   MAGLSNAVSSLFLKEFVGAFLLSMRYFFRPKATLNYPFEKGPVSPRFRGEHALRRYPNGE 61

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVE
Sbjct: 62  ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 121

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEF+TETR+ELYYDKE+LL NGDRWE EI RNI  DSPYR
Sbjct: 122 GPNFEFSTETREELYYDKEKLLANGDRWEREIARNIAMDSPYR 164


>gi|150396121|ref|YP_001326588.1| NADH dehydrogenase subunit I [Sinorhizobium medicae WSM419]
 gi|150027636|gb|ABR59753.1| NADH-quinone oxidoreductase, chain I [Sinorhizobium medicae WSM419]
          Length = 163

 Score =  191 bits (486), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 133/163 (81%), Positives = 143/163 (87%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M      VS LFLKEFVGAF L +RYFF+ K T+NYP+EKG  SPRFRGEHALRRYPNGE
Sbjct: 1   MAGLSNAVSSLFLKEFVGAFLLSMRYFFRPKATLNYPYEKGPISPRFRGEHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVE
Sbjct: 61  ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 120

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEF+TETR+ELYYDKE+LL NGDRWE EI RNI  DSPYR
Sbjct: 121 GPNFEFSTETREELYYDKEKLLANGDRWEREIARNIAMDSPYR 163


>gi|169861584|ref|XP_001837426.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Coprinopsis cinerea
           okayama7#130]
 gi|116501447|gb|EAU84342.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Coprinopsis cinerea
           okayama7#130]
          Length = 245

 Score =  191 bits (486), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 103/160 (64%), Positives = 117/160 (73%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
               V   F  E +   ++ L  FF+   TI YPFEKG  SPRFRGEHALRRYP+GEERC
Sbjct: 87  LDKAVHIFFFTEIIRGMWVVLEQFFRPPYTIMYPFEKGPLSPRFRGEHALRRYPSGEERC 146

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAITIES  R   G+R+T +YDIDM KCIYCG C EACPVDAIVE  N
Sbjct: 147 IACKLCEAICPAQAITIESEARQD-GSRKTTKYDIDMTKCIYCGFCAEACPVDAIVETQN 205

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            EF+TETR+EL Y+KE+LL NGDR E+EI  N+  D  YR
Sbjct: 206 QEFSTETREELLYNKEKLLANGDRAEAEIAANLHADHLYR 245


>gi|224050711|ref|XP_002196899.1| PREDICTED: similar to NADH dehydrogenase [ubiquinone] iron-sulfur
           protein 8, mitochondrial [Taeniopygia guttata]
          Length = 235

 Score =  191 bits (485), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 113/164 (68%), Positives = 125/164 (76%), Gaps = 2/164 (1%)

Query: 1   MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59
           MR I       L   E V    + L Y F+   TINYPFEKG  SPRFRGEHALRRYP+G
Sbjct: 73  MRSITDRAAQTLLWTELVRGLAMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 132

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           EERCIACKLCEA+CPAQAITIE+ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIV
Sbjct: 133 EERCIACKLCEAVCPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 191

Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           EGPNFEF+TET +EL Y+KE+LLNNGD+WE+EI  NI  D  YR
Sbjct: 192 EGPNFEFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADYLYR 235


>gi|299470484|emb|CBN78476.1| NUOI homolog, NADH dehydrogenase (ubiquinone) subunit [Ectocarpus
           siliculosus]
          Length = 236

 Score =  191 bits (485), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 111/161 (68%), Positives = 125/161 (77%), Gaps = 1/161 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
                 + +F+ E   A +L    FFK K TINYPFEKG  SPRFRGEHALRRYP+GEER
Sbjct: 77  TIDRLSNIMFMAEIFRALWLSAEVFFKPKVTINYPFEKGPLSPRFRGEHALRRYPSGEER 136

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI+CKLCEAICPAQAITIE+  R  DG+R+T RYDIDM KCIYCG CQEACPVDAIVEGP
Sbjct: 137 CISCKLCEAICPAQAITIEAEQR-EDGSRKTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 195

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           N+EFATET +EL YDKE+LL NGDRWE  I +N+  D PYR
Sbjct: 196 NYEFATETHEELLYDKEKLLANGDRWEVAIAQNLAADHPYR 236


>gi|209737012|gb|ACI69375.1| NADH dehydrogenase iron-sulfur protein 8, mitochondrial precursor
           [Salmo salar]
          Length = 210

 Score =  191 bits (484), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 111/164 (67%), Positives = 124/164 (75%), Gaps = 2/164 (1%)

Query: 1   MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59
           M+ I       L   E      + + Y F+   TINYPFEKG  SPRFRGEHALRRYP+G
Sbjct: 48  MKSITDRAAQTLLWTELFRGLGMTMSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 107

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           EERCIACKLCEAICPAQAITIE+ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIV
Sbjct: 108 EERCIACKLCEAICPAQAITIEAEPRSD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 166

Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           EGPNFEF+TET +EL Y+KE+LLNNGD+WE+EI  NI  D  YR
Sbjct: 167 EGPNFEFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADYLYR 210


>gi|225706152|gb|ACO08922.1| NADH dehydrogenase iron-sulfur protein 8, mitochondrial precursor
           [Osmerus mordax]
          Length = 210

 Score =  191 bits (484), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 111/164 (67%), Positives = 124/164 (75%), Gaps = 2/164 (1%)

Query: 1   MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59
           M+ I       L   E      + + Y F+   TINYPFEKG  SPRFRGEHALRRYP+G
Sbjct: 48  MKSITDRAAQTLLWTELFRGLGMTMSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 107

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           EERCIACKLCEAICPAQAITIE+ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIV
Sbjct: 108 EERCIACKLCEAICPAQAITIEAEPRSD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 166

Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           EGPNFEF+TET +EL Y+KE+LLNNGD+WE+EI  NI  D  YR
Sbjct: 167 EGPNFEFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADYLYR 210


>gi|255084007|ref|XP_002508578.1| NADH dehydrogenase [Micromonas sp. RCC299]
 gi|226523855|gb|ACO69836.1| NADH dehydrogenase [Micromonas sp. RCC299]
          Length = 228

 Score =  191 bits (484), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 111/161 (68%), Positives = 127/161 (78%), Gaps = 1/161 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           +   +   LFL E      L ++YF++ K TINYPFEKG  SPRFRGEHALRRYP GEER
Sbjct: 69  VLDASAQTLFLTEMFRGMSLAMKYFWEPKVTINYPFEKGPLSPRFRGEHALRRYPTGEER 128

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCEAICPAQAITIE+  R  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGP
Sbjct: 129 CIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 187

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           NFE+AT T +EL YDKE+LL NGD+WE EI +N+ ++S YR
Sbjct: 188 NFEYATYTHEELLYDKEKLLANGDKWELEIQKNLASESLYR 228


>gi|225428485|ref|XP_002284290.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297741457|emb|CBI32588.3| unnamed protein product [Vitis vinifera]
          Length = 223

 Score =  190 bits (483), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 116/162 (71%), Positives = 129/162 (79%), Gaps = 1/162 (0%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
            +F  +++ LFL E V    L L+YFF  + TINYPFEKG  SPRFRGEHALRRYP GEE
Sbjct: 63  SVFNHSINTLFLTEMVRGLMLTLKYFFDTQVTINYPFEKGPLSPRFRGEHALRRYPTGEE 122

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLCEAICPAQAITIE+  R  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEG
Sbjct: 123 RCIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 181

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           PNFEF TET +EL YDKE+LL NGDRWE+EI  N+  +S YR
Sbjct: 182 PNFEFTTETHEELLYDKEKLLENGDRWETEIAENLRAESLYR 223


>gi|90417835|ref|ZP_01225747.1| NADH dehydrogenase I, I subunit [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90337507|gb|EAS51158.1| NADH dehydrogenase I, I subunit [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 163

 Score =  189 bits (481), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 125/163 (76%), Positives = 138/163 (84%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M      V  LFL EFV A  L +RYFF  K T+NYPFEK   SPRFRGEHALRRYPNG+
Sbjct: 1   MSAIAQTVRSLFLVEFVKAMGLSMRYFFAPKATVNYPFEKNPQSPRFRGEHALRRYPNGQ 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYD+DM+KCIYCG CQEACPVDAIVE
Sbjct: 61  ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDLDMVKCIYCGFCQEACPVDAIVE 120

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEF+TETR+ELYYDK++LL+NGDRWE EI RNI  D+PYR
Sbjct: 121 GPNFEFSTETREELYYDKQKLLDNGDRWEREIARNIALDAPYR 163


>gi|13471398|ref|NP_102964.1| NADH dehydrogenase subunit I [Mesorhizobium loti MAFF303099]
 gi|75543506|sp|Q98KR4|NUOI_RHILO RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|14022140|dbj|BAB48750.1| NADH-ubiquinone dehydrogenase chain 9 [Mesorhizobium loti
           MAFF303099]
          Length = 164

 Score =  189 bits (481), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 126/163 (77%), Positives = 137/163 (84%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M         L L++FV AFFL +R FF  K TINYP EKG  SPRFRGEHALRRYPNGE
Sbjct: 2   MSALSQAAKSLLLQDFVSAFFLSMRQFFAPKETINYPHEKGPVSPRFRGEHALRRYPNGE 61

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVE
Sbjct: 62  ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 121

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEFATETR+ELYYDK++LL NGDRWE E+ RNI  D+PYR
Sbjct: 122 GPNFEFATETREELYYDKDKLLANGDRWERELARNISLDAPYR 164


>gi|289743757|gb|ADD20626.1| NADH-ubiquinone oxidoreductase NDUFS8/23 kDa subunit [Glossina
           morsitans morsitans]
          Length = 215

 Score =  189 bits (481), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 112/159 (70%), Positives = 124/159 (77%), Gaps = 1/159 (0%)

Query: 5   RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64
               S +FL E    F + L + FK   TINYPFEKG  SPRFRGEHALRRYP+GEERCI
Sbjct: 58  DRAASTIFLSELARGFAVTLAHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEERCI 117

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           ACKLCEAICPAQAITIE+  R   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNF
Sbjct: 118 ACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNF 176

Query: 125 EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           EF+TET +EL Y+KE+LLNNGD+WESEI  N+  D  YR
Sbjct: 177 EFSTETHEELLYNKEKLLNNGDKWESEIASNLQADHLYR 215


>gi|296116527|ref|ZP_06835137.1| NADH dehydrogenase subunit I [Gluconacetobacter hansenii ATCC
           23769]
 gi|295976739|gb|EFG83507.1| NADH dehydrogenase subunit I [Gluconacetobacter hansenii ATCC
           23769]
          Length = 162

 Score =  189 bits (481), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 110/163 (67%), Positives = 126/163 (77%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M           L E V    + L+ FFK K T+NYP+EKG  SPRFRGEHALRRYPNGE
Sbjct: 1   MGYLSRTARSFLLTELVSGMSVTLKAFFKPKVTLNYPYEKGPLSPRFRGEHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA CPA+AITIE+ PR   G+RRT RYDIDM KCIYCGLC+EACPVDAIVE
Sbjct: 61  ERCIACKLCEATCPAEAITIEAEPRDD-GSRRTTRYDIDMTKCIYCGLCEEACPVDAIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPN+EFATETR+EL Y+K++LL NGDRWES + R +  D+PYR
Sbjct: 120 GPNYEFATETREELMYNKDKLLANGDRWESVLARRLELDAPYR 162


>gi|323508175|emb|CBQ68046.1| probable NADH-ubiquinone oxidoreductase 23 kDa subunit precursor
           [Sporisorium reilianum]
          Length = 265

 Score =  189 bits (481), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 106/160 (66%), Positives = 116/160 (72%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
                   F  E +   ++ L  FF+   TI YPFEKG  SPRFRGEHALRRYP GEERC
Sbjct: 107 LDKAGQLFFFTEILRGMWIVLENFFRPPYTIMYPFEKGPLSPRFRGEHALRRYPTGEERC 166

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAITIES PR  DG RRT RYDIDM KCIYCG CQEACPVDAIVE  N
Sbjct: 167 IACKLCEAICPAQAITIESEPR-EDGARRTTRYDIDMTKCIYCGFCQEACPVDAIVETQN 225

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            E++TETR+EL Y+KE+LL NGDR E+EI  NI  D   R
Sbjct: 226 TEYSTETREELLYNKEKLLANGDRAEAEIAANIWADHLQR 265


>gi|118590029|ref|ZP_01547433.1| NADH dehydrogenase subunit I [Stappia aggregata IAM 12614]
 gi|118437526|gb|EAV44163.1| NADH dehydrogenase subunit I [Stappia aggregata IAM 12614]
          Length = 162

 Score =  189 bits (480), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 130/160 (81%), Positives = 139/160 (86%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
               V  LFL+EFV AF L +RYFFK K T+NYPFEKG  SPRFRGEHALRRYPNGEERC
Sbjct: 3   LSQAVKSLFLQEFVSAFVLAMRYFFKPKPTVNYPFEKGPVSPRFRGEHALRRYPNGEERC 62

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAITIE+GPR +DGTRRT RYDIDM+KCIYCG CQEACPVDAIVEGPN
Sbjct: 63  IACKLCEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGFCQEACPVDAIVEGPN 122

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FEFATETR+ELYYDKE+LL NGDRWE EI RNI  D+PYR
Sbjct: 123 FEFATETREELYYDKEKLLANGDRWEREIARNIEMDAPYR 162


>gi|303289747|ref|XP_003064161.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226454477|gb|EEH51783.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 231

 Score =  189 bits (480), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 111/161 (68%), Positives = 128/161 (79%), Gaps = 1/161 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           +   +   LFL E      L ++YF++ K TINYPFEKG  SPRFRGEHALRRYP GEER
Sbjct: 72  VIDASAQTLFLTEMFRGMSLAMKYFWEPKVTINYPFEKGPLSPRFRGEHALRRYPTGEER 131

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCEAICPAQAITIE+  R  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGP
Sbjct: 132 CIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 190

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           NFE+AT T +EL YDKE+LL+NGD+WE EI +N+ ++S YR
Sbjct: 191 NFEYATYTHEELMYDKEKLLDNGDKWEKEIAKNLASESLYR 231


>gi|158423300|ref|YP_001524592.1| NADH dehydrogenase subunit I [Azorhizobium caulinodans ORS 571]
 gi|172047937|sp|A8I407|NUOI_AZOC5 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|158330189|dbj|BAF87674.1| NADH-quinone oxidoreductase chain I protein [Azorhizobium
           caulinodans ORS 571]
          Length = 162

 Score =  189 bits (480), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 128/163 (78%), Positives = 136/163 (83%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M+        LFL E V  FFL +RYFFK K TINYPFEK   SPRFRGEHALRRYPNGE
Sbjct: 1   MK-LDQAARALFLTELVSGFFLAMRYFFKPKATINYPFEKNPISPRFRGEHALRRYPNGE 59

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE+GPR +DGTRRT RYDIDM+KCIYCG CQEACPVDAIVE
Sbjct: 60  ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGFCQEACPVDAIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEFATETR+ELYYDKE+LL NGDRWE EI R I  D+PYR
Sbjct: 120 GPNFEFATETREELYYDKEKLLANGDRWEREIARAIAADAPYR 162


>gi|86357247|ref|YP_469139.1| NADH dehydrogenase subunit I [Rhizobium etli CFN 42]
 gi|190891295|ref|YP_001977837.1| NADH-ubiquinone oxidoreductase, chain I [Rhizobium etli CIAT 652]
 gi|218462497|ref|ZP_03502588.1| NADH dehydrogenase subunit I [Rhizobium etli Kim 5]
 gi|218509388|ref|ZP_03507266.1| NADH dehydrogenase subunit I [Rhizobium etli Brasil 5]
 gi|115502507|sp|Q2K9S4|NUOI1_RHIEC RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName:
           Full=NADH dehydrogenase I subunit I 1; AltName:
           Full=NDH-1 subunit I 1
 gi|86281349|gb|ABC90412.1| NADH-ubiquinone oxidoreductase chain I protein [Rhizobium etli CFN
           42]
 gi|190696574|gb|ACE90659.1| NADH-ubiquinone oxidoreductase protein, chain I [Rhizobium etli
           CIAT 652]
 gi|327188496|gb|EGE55710.1| NADH dehydrogenase subunit I [Rhizobium etli CNPAF512]
          Length = 163

 Score =  189 bits (480), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 133/163 (81%), Positives = 144/163 (88%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M     +++ LFLKEF GAFFL +RYFF+ K TINYPFEKG  SPRFRGEHALRRYPNGE
Sbjct: 1   MASLSSSINSLFLKEFFGAFFLSMRYFFRQKATINYPFEKGPVSPRFRGEHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVE
Sbjct: 61  ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 120

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEFATETR+ELY+DK RLL+NGDRWE EI RNI  DSPYR
Sbjct: 121 GPNFEFATETREELYFDKARLLDNGDRWEREIARNIAIDSPYR 163


>gi|89276311|gb|ABD66512.1| mitochondrial NADH:ubiquinone oxidoreductase complex I [Gymnadenia
           conopsea]
          Length = 226

 Score =  189 bits (479), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 117/162 (72%), Positives = 132/162 (81%), Gaps = 1/162 (0%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
            +F  +++ LFL E V    L L+YFF+ K TINYPFEKG  SPRFRGEHALRRYP+GEE
Sbjct: 66  SVFERSMNTLFLTELVRGLMLTLKYFFEPKVTINYPFEKGPLSPRFRGEHALRRYPSGEE 125

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLCEAICPAQAITIE+  R  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEG
Sbjct: 126 RCIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 184

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           PNFEF TET +EL YDKE+LL NGDRWE+EI  N+ ++S YR
Sbjct: 185 PNFEFTTETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 226


>gi|116251475|ref|YP_767313.1| NADH dehydrogenase subunit I [Rhizobium leguminosarum bv. viciae
           3841]
 gi|241204096|ref|YP_002975192.1| NADH dehydrogenase subunit I [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|115502540|sp|Q1MIK6|NUOI_RHIL3 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|115256123|emb|CAK07204.1| putative NADH-quinone oxidoreductase subunit I [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|240857986|gb|ACS55653.1| NADH-quinone oxidoreductase, chain I [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 163

 Score =  189 bits (479), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 135/163 (82%), Positives = 145/163 (88%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M     ++S LFLKEFVGAFFL +RYFF+ K TINYPFEKG  SPRFRGEHALRRYPNGE
Sbjct: 1   MASLSGSISSLFLKEFVGAFFLSMRYFFRQKATINYPFEKGPVSPRFRGEHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVE
Sbjct: 61  ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 120

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEFATETR+ELY+DK RLL+NGDRWE EI RNI  DSPYR
Sbjct: 121 GPNFEFATETREELYFDKARLLDNGDRWEREIARNIAIDSPYR 163


>gi|320591509|gb|EFX03948.1| NADH-quinone oxidoreductase [Grosmannia clavigera kw1407]
          Length = 243

 Score =  189 bits (479), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 106/161 (65%), Positives = 122/161 (75%), Gaps = 1/161 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
            F     +  L E +   ++ L  FF+   TI YPFEKG  SPRFRGEHALRRYP+GEER
Sbjct: 84  TFDKIGKYFMLLEMLRGMYVLLEQFFRPPYTIYYPFEKGPISPRFRGEHALRRYPSGEER 143

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCEAICPAQAITIE+  R   G+RRT RYDIDM KCIYCG CQE+CPVDAIVE P
Sbjct: 144 CIACKLCEAICPAQAITIEAEERAD-GSRRTSRYDIDMTKCIYCGFCQESCPVDAIVESP 202

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           N E+ATETR+EL Y+KE+LL+NGD+WE E+   I  DSPYR
Sbjct: 203 NAEYATETREELLYNKEKLLSNGDKWEPELAAAIRADSPYR 243


>gi|154253657|ref|YP_001414481.1| NADH dehydrogenase subunit I [Parvibaculum lavamentivorans DS-1]
 gi|171769682|sp|A7HY41|NUOI_PARL1 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|154157607|gb|ABS64824.1| NADH-quinone oxidoreductase, chain I [Parvibaculum lavamentivorans
           DS-1]
          Length = 163

 Score =  189 bits (479), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 127/163 (77%), Positives = 136/163 (83%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M     +   LFL EFV +F L +RYFFK K T+NYPFEKG  SPRFRGEHALRRYPNGE
Sbjct: 1   MAWLDQSARSLFLAEFVSSFLLAMRYFFKPKVTLNYPFEKGPLSPRFRGEHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPA AITIE+GPR +DGTRRT RYDIDM KCIYCGLCQEACPVDAIVE
Sbjct: 61  ERCIACKLCEAICPALAITIEAGPRRNDGTRRTTRYDIDMTKCIYCGLCQEACPVDAIVE 120

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEFATETR+EL YDK RLL NGDRWE EI +NI  D+PYR
Sbjct: 121 GPNFEFATETREELMYDKNRLLANGDRWEREIAKNIALDAPYR 163


>gi|222148283|ref|YP_002549240.1| NADH dehydrogenase subunit I [Agrobacterium vitis S4]
 gi|254767831|sp|B9JVF4|NUOI_AGRVS RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|221735271|gb|ACM36234.1| NADH ubiquinone oxidoreductase chain I [Agrobacterium vitis S4]
          Length = 163

 Score =  189 bits (479), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 129/163 (79%), Positives = 141/163 (86%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M      V  LFLKEFV AFFL +RYFFK K T+NYPFEKG  SPRFRGEHALRRYPNGE
Sbjct: 1   MASVSQAVRSLFLKEFVNAFFLSMRYFFKQKATVNYPFEKGPVSPRFRGEHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVE
Sbjct: 61  ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 120

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEF+TE+R+ELY+DK +LL NGDRWE EI RN+  D+PYR
Sbjct: 121 GPNFEFSTESREELYFDKAKLLANGDRWEREIARNLAQDAPYR 163


>gi|319782990|ref|YP_004142466.1| NADH-quinone oxidoreductase, chain I [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317168878|gb|ADV12416.1| NADH-quinone oxidoreductase, chain I [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 163

 Score =  189 bits (479), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 129/163 (79%), Positives = 138/163 (84%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M         L L++FV AFFL +R FF  K TINYP EKG TSPRFRGEHALRRYPNGE
Sbjct: 1   MSALSQAAKSLLLQDFVSAFFLSMRQFFAPKETINYPHEKGPTSPRFRGEHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVE
Sbjct: 61  ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 120

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEFATETR+ELYYDK+RLL NGDRWE E+ RNI  DSPYR
Sbjct: 121 GPNFEFATETREELYYDKDRLLANGDRWERELARNISLDSPYR 163


>gi|239831694|ref|ZP_04680023.1| NADH-quinone oxidoreductase, chain I [Ochrobactrum intermedium LMG
           3301]
 gi|239823961|gb|EEQ95529.1| NADH-quinone oxidoreductase, chain I [Ochrobactrum intermedium LMG
           3301]
          Length = 163

 Score =  189 bits (479), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 131/163 (80%), Positives = 139/163 (85%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M  F      L LKEFVGAFFL +R FF  K T+NYP EKG  SPRFRGEHALRRYPNGE
Sbjct: 1   MASFAQAAKSLLLKEFVGAFFLSMRQFFAPKATLNYPHEKGPVSPRFRGEHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVE
Sbjct: 61  ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 120

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEFATETR+ELYYDKE+LL NGDRWE EI RNI  D+PYR
Sbjct: 121 GPNFEFATETREELYYDKEKLLANGDRWEREIARNIAMDAPYR 163


>gi|194218557|ref|XP_001498476.2| PREDICTED: similar to NADH dehydrogenase (ubiquinone) [Equus
           caballus]
          Length = 210

 Score =  189 bits (479), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 110/164 (67%), Positives = 125/164 (76%), Gaps = 2/164 (1%)

Query: 1   MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59
           M+ +       L   E +    + L Y F+   TINYPFEKG  SPRFRGEHALRRYP+G
Sbjct: 48  MKSVTDRAAQTLLWTELIRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 107

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           EERCIACKLCEA+CPAQAITIE+ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIV
Sbjct: 108 EERCIACKLCEAVCPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 166

Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           EGPNFEF+TET +EL Y+KE+LLNNGD+WE+EI  NI  D  YR
Sbjct: 167 EGPNFEFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADYLYR 210


>gi|226499536|ref|NP_001148902.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Zea mays]
 gi|195623106|gb|ACG33383.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Zea mays]
          Length = 223

 Score =  189 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 116/161 (72%), Positives = 130/161 (80%), Gaps = 1/161 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           +F  +++ LFL E V    L L+YFF    TINYPFEKG  SPRFRGEHALRRY +GEER
Sbjct: 64  VFERSINTLFLTEMVRGLMLTLKYFFDRNVTINYPFEKGPLSPRFRGEHALRRYESGEER 123

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCEAICPAQAITIE+  R  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGP
Sbjct: 124 CIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 182

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           NFEFATET +EL YDKE+LL NGDRWE+EI  N+ ++S YR
Sbjct: 183 NFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 223


>gi|153009743|ref|YP_001370958.1| NADH dehydrogenase subunit I [Ochrobactrum anthropi ATCC 49188]
 gi|166918794|sp|A6X1M5|NUOI_OCHA4 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|151561631|gb|ABS15129.1| NADH-quinone oxidoreductase, chain I [Ochrobactrum anthropi ATCC
           49188]
          Length = 163

 Score =  189 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 130/163 (79%), Positives = 139/163 (85%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M  F      L LKEFVGAFFL +R FF  K T+NYP EKG  SPRFRGEHALRRYPNGE
Sbjct: 1   MASFAQAAKSLLLKEFVGAFFLSMRQFFAPKATLNYPHEKGPVSPRFRGEHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVE
Sbjct: 61  ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 120

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEFATETR+ELYYDK++LL NGDRWE EI RNI  D+PYR
Sbjct: 121 GPNFEFATETREELYYDKDKLLANGDRWEREIARNIAMDAPYR 163


>gi|115455639|ref|NP_001051420.1| Os03g0774200 [Oryza sativa Japonica Group]
 gi|31745233|gb|AAP68893.1| putative NADH dehydrogenase [Oryza sativa Japonica Group]
 gi|108711316|gb|ABF99111.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           precursor, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113549891|dbj|BAF13334.1| Os03g0774200 [Oryza sativa Japonica Group]
 gi|215686857|dbj|BAG89707.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215767445|dbj|BAG99673.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 223

 Score =  189 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 117/161 (72%), Positives = 131/161 (81%), Gaps = 1/161 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           +F  +++ LFL E V    L L+YFF+   TINYPFEKG  SPRFRGEHALRRYP GEER
Sbjct: 64  VFERSINTLFLTEMVRGLMLTLKYFFEKNVTINYPFEKGPLSPRFRGEHALRRYPTGEER 123

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCEAICPAQAITIE+  R  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGP
Sbjct: 124 CIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 182

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           NFEFATET +EL YDKE+LL NGDRWE+EI  N+ ++S YR
Sbjct: 183 NFEFATETHEELLYDKEKLLENGDRWETEIAANLESESLYR 223


>gi|326519326|dbj|BAJ96662.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 223

 Score =  188 bits (478), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 114/161 (70%), Positives = 130/161 (80%), Gaps = 1/161 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           +F  +++ LFL E V    L L+YFF+ K TINYPFEKG  SPRFRGEHALR Y  GEER
Sbjct: 64  VFERSINTLFLTEMVRGLMLTLKYFFERKVTINYPFEKGPLSPRFRGEHALRHYDTGEER 123

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCEAICPAQAITIE+  R  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGP
Sbjct: 124 CIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 182

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           NFEF+TET +EL YDKE+LL NGDRWE+EI  N+ +++ YR
Sbjct: 183 NFEFSTETHEELLYDKEKLLENGDRWETEIAENLKSEALYR 223


>gi|226505580|ref|NP_001149640.1| LOC100283266 [Zea mays]
 gi|194703360|gb|ACF85764.1| unknown [Zea mays]
 gi|195605168|gb|ACG24414.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Zea mays]
 gi|195628756|gb|ACG36208.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Zea mays]
          Length = 223

 Score =  188 bits (478), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 116/161 (72%), Positives = 131/161 (81%), Gaps = 1/161 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           +F  +++ LFL E V    L L+YFF+   TINYPFEKG  SPRFRGEHALRRY +GEER
Sbjct: 64  VFERSINTLFLTEMVRGLMLTLKYFFERNVTINYPFEKGPLSPRFRGEHALRRYESGEER 123

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCEAICPAQAITIE+  R  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGP
Sbjct: 124 CIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 182

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           NFEFATET +EL YDKE+LL NGDRWE+EI  N+ ++S YR
Sbjct: 183 NFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 223


>gi|254502708|ref|ZP_05114859.1| NADH-quinone oxidoreductase, chain I subfamily [Labrenzia
           alexandrii DFL-11]
 gi|222438779|gb|EEE45458.1| NADH-quinone oxidoreductase, chain I subfamily [Labrenzia
           alexandrii DFL-11]
          Length = 161

 Score =  188 bits (478), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 131/158 (82%), Positives = 140/158 (88%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
             V  LFL+EFV AFFL +RYFFK K T+NYPFEKG  SPRFRGEHALRRYPNGEERCIA
Sbjct: 4   QTVKSLFLQEFVSAFFLAMRYFFKPKPTVNYPFEKGPVSPRFRGEHALRRYPNGEERCIA 63

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEAICPAQAITIE+GPR +DGTRRT RYDIDM+KCIYCG CQEACPVDAIVEGPNFE
Sbjct: 64  CKLCEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGFCQEACPVDAIVEGPNFE 123

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FATETR+ELYYDKE+LL NGDRWE EI RNI  D+PYR
Sbjct: 124 FATETREELYYDKEKLLANGDRWEREIARNIEMDAPYR 161


>gi|304391410|ref|ZP_07373352.1| NADH-quinone oxidoreductase subunit i [Ahrensia sp. R2A130]
 gi|303295639|gb|EFL89997.1| NADH-quinone oxidoreductase subunit i [Ahrensia sp. R2A130]
          Length = 163

 Score =  188 bits (478), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 124/163 (76%), Positives = 138/163 (84%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M         LFL EFV AF L ++YFF  K TINYP+EKG +SPRFRGEHALRRYPNGE
Sbjct: 1   MSSLAQAGKSLFLLEFVKAFALGVKYFFAPKVTINYPYEKGESSPRFRGEHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVE
Sbjct: 61  ERCIACKLCEAVCPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 120

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEF+TETR+ELYYDK++LL NG RWE E+ RNI  D+PYR
Sbjct: 121 GPNFEFSTETREELYYDKDKLLENGARWERELARNIALDAPYR 163


>gi|242766902|ref|XP_002341262.1| NADH-quinone oxidoreductase, 23 kDa subunit, putative [Talaromyces
           stipitatus ATCC 10500]
 gi|218724458|gb|EED23875.1| NADH-quinone oxidoreductase, 23 kDa subunit, putative [Talaromyces
           stipitatus ATCC 10500]
          Length = 225

 Score =  188 bits (478), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 104/160 (65%), Positives = 120/160 (75%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
                 +  + E     ++ L  FF+   TI YPFEKG  SPRFRGEHALRRYP+GEERC
Sbjct: 67  LDKASKYFLMAELFRGMYVVLEQFFRPPYTIFYPFEKGPISPRFRGEHALRRYPSGEERC 126

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAITIE+  R  DG+RRT RYDIDM KCIYCG CQE+CPVDAIVE PN
Sbjct: 127 IACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGYCQESCPVDAIVESPN 185

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            E+ATETR+EL Y+KE+LL NGD+WE E+   I  D+PYR
Sbjct: 186 AEYATETREELLYNKEKLLANGDKWEPELAAVIRADAPYR 225


>gi|291245007|ref|XP_002742384.1| PREDICTED: NADH dehydrogenase iron-sulfur protein 8,
           mitochondrial-like [Saccoglossus kowalevskii]
          Length = 207

 Score =  188 bits (477), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 110/161 (68%), Positives = 124/161 (77%), Gaps = 1/161 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           +       LFL E +    + L Y F+   TI YPFEKG  SPRFRGEHALRRYP+GEER
Sbjct: 48  VTDRVARTLFLGELMRGLAMTLSYMFREPATIQYPFEKGPLSPRFRGEHALRRYPSGEER 107

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCEAICPAQAITIE+ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGP
Sbjct: 108 CIACKLCEAICPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGYCQEACPVDAIVEGP 166

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           NFE++TET +EL Y+KE+LLNNGD+WE+EI  NI  D  YR
Sbjct: 167 NFEYSTETHEELLYNKEKLLNNGDKWEAEIAANIQADYLYR 207


>gi|300023445|ref|YP_003756056.1| NADH-quinone oxidoreductase, chain I [Hyphomicrobium denitrificans
           ATCC 51888]
 gi|299525266|gb|ADJ23735.1| NADH-quinone oxidoreductase, chain I [Hyphomicrobium denitrificans
           ATCC 51888]
          Length = 162

 Score =  188 bits (477), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 126/158 (79%), Positives = 135/158 (85%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
                LFL E V AF L LRYFF  K T+NYP+EKG  SPRFRGEHALRRYPNGEERCIA
Sbjct: 5   RAAKSLFLTEIVVAFVLTLRYFFAPKKTLNYPYEKGPLSPRFRGEHALRRYPNGEERCIA 64

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEAICPAQAITIE+GPR +DGTRRT RYDIDM KCIYCGLCQEACPVDAIVEGPNFE
Sbjct: 65  CKLCEAICPAQAITIEAGPRRNDGTRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGPNFE 124

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FATETR+EL+YDKERLL+NGDRWE EI +NI  D+ YR
Sbjct: 125 FATETREELFYDKERLLSNGDRWEREIAKNIALDAKYR 162


>gi|157821497|ref|NP_001099792.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial [Rattus norvegicus]
 gi|149061895|gb|EDM12318.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8 (predicted), isoform
           CRA_a [Rattus norvegicus]
 gi|149061896|gb|EDM12319.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8 (predicted), isoform
           CRA_a [Rattus norvegicus]
 gi|149061897|gb|EDM12320.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8 (predicted), isoform
           CRA_a [Rattus norvegicus]
 gi|165971299|gb|AAI58792.1| Ndufs8 protein [Rattus norvegicus]
          Length = 212

 Score =  188 bits (477), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 111/164 (67%), Positives = 123/164 (75%), Gaps = 2/164 (1%)

Query: 1   MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59
           M+         L   E      + L Y F+   TINYPFEKG  SPRFRGEHALRRYP+G
Sbjct: 50  MKSATDSAARILMWTELFRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 109

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           EERCIACKLCEAICPAQAITIE+ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIV
Sbjct: 110 EERCIACKLCEAICPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 168

Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           EGPNFEF+TET +EL Y+KE+LLNNGD+WE+EI  NI  D  YR
Sbjct: 169 EGPNFEFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADYLYR 212


>gi|261206240|ref|XP_002627857.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Ajellomyces
           dermatitidis SLH14081]
 gi|239592916|gb|EEQ75497.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Ajellomyces
           dermatitidis SLH14081]
 gi|239610912|gb|EEQ87899.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Ajellomyces
           dermatitidis ER-3]
 gi|327357611|gb|EGE86468.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Ajellomyces
           dermatitidis ATCC 18188]
          Length = 235

 Score =  188 bits (477), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 103/160 (64%), Positives = 119/160 (74%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
                 +  L E +   ++ L  FF+   TI YPFEKG  SPRFRGEHALRRYP+GEERC
Sbjct: 77  LDKAGKYFLLAEMLRGMYVVLEQFFRPPYTIFYPFEKGPISPRFRGEHALRRYPSGEERC 136

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPA AITIE+  R  DG+RRT RYDIDM KCIYCG CQE+CPVDAIVE PN
Sbjct: 137 IACKLCEAICPALAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQESCPVDAIVESPN 195

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            E+ATETR+EL Y+KE+LL NGD+WE E+      D+PYR
Sbjct: 196 AEYATETREELLYNKEKLLANGDKWEPELAAVARADAPYR 235


>gi|116792080|gb|ABK26223.1| unknown [Picea sitchensis]
          Length = 224

 Score =  188 bits (477), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 116/161 (72%), Positives = 131/161 (81%), Gaps = 1/161 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           +   +++ LFL E +    L L+YFF+ K TINYPFEKG  SPRFRGEHALRRYP GEER
Sbjct: 65  VLDKSMNTLFLTEMIRGMMLGLKYFFEKKVTINYPFEKGPLSPRFRGEHALRRYPTGEER 124

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCEAICPAQAITIE+  R  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGP
Sbjct: 125 CIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 183

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           NFEFATET +EL YDKE+LL NGDRWE+EI  N+ ++S YR
Sbjct: 184 NFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 224


>gi|328869461|gb|EGG17839.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Dictyostelium
           fasciculatum]
          Length = 213

 Score =  188 bits (477), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 113/162 (69%), Positives = 126/162 (77%), Gaps = 1/162 (0%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
           +I     +  FL E +   ++ + YFF+ K TINYPFEKG  SPRFRGEHALRRYP GEE
Sbjct: 53  KIVDEAANTFFLSEIMVGLYITMGYFFRKKCTINYPFEKGPLSPRFRGEHALRRYPTGEE 112

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLCEAICPAQAITIE+ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIVEG
Sbjct: 113 RCIACKLCEAICPAQAITIEAEPRLD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 171

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           PNFEF TE+R EL Y+KE+LL NGDRWE+EI  NI  D  YR
Sbjct: 172 PNFEFTTESRIELLYNKEKLLQNGDRWETEIAANIAADYLYR 213


>gi|332249710|ref|XP_003274000.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial-like [Nomascus leucogenys]
          Length = 217

 Score =  188 bits (477), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 111/164 (67%), Positives = 124/164 (75%), Gaps = 2/164 (1%)

Query: 1   MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59
           M+ +       L   E      + L Y F+   TINYPFEKG  SPRFRGEHALRRYP+G
Sbjct: 55  MKSVTDRAARTLLWTELFRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 114

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           EERCIACKLCEAICPAQAITIE+ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIV
Sbjct: 115 EERCIACKLCEAICPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 173

Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           EGPNFEF+TET +EL Y+KE+LLNNGD+WE+EI  NI  D  YR
Sbjct: 174 EGPNFEFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADYLYR 217


>gi|222085585|ref|YP_002544115.1| NADH-ubiquinone oxidoreductase chain I protein [Agrobacterium
           radiobacter K84]
 gi|221723033|gb|ACM26189.1| NADH-ubiquinone oxidoreductase chain I protein [Agrobacterium
           radiobacter K84]
          Length = 165

 Score =  188 bits (477), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 137/163 (84%), Positives = 144/163 (88%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M  F   VS +FLKEFVGAFFL +RYFFK K TINYPFEKG  SPRFRGEHALRRYPNGE
Sbjct: 3   MAGFSNAVSSVFLKEFVGAFFLSMRYFFKQKATINYPFEKGPVSPRFRGEHALRRYPNGE 62

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVE
Sbjct: 63  ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 122

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEFATETR+ELY+DK RLL NGDRWE EI RNI  DSPYR
Sbjct: 123 GPNFEFATETREELYFDKARLLENGDRWEREIARNIAIDSPYR 165


>gi|109105179|ref|XP_001104103.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial [Macaca mulatta]
 gi|62287022|sp|Q60HE3|NDUS8_MACFA RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           8, mitochondrial; AltName: Full=Complex I-23kD;
           Short=CI-23kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 23 kDa subunit; Flags: Precursor
 gi|52782251|dbj|BAD51972.1| NADH dehydrogenase Fe-S protein 8 [Macaca fascicularis]
 gi|90076936|dbj|BAE88148.1| unnamed protein product [Macaca fascicularis]
          Length = 210

 Score =  188 bits (477), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 110/164 (67%), Positives = 124/164 (75%), Gaps = 2/164 (1%)

Query: 1   MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59
           M+ +       L   E      + L Y F+   TINYPFEKG  SPRFRGEHALRRYP+G
Sbjct: 48  MKSVTDRAARTLLWTELFRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 107

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           EERCIACKLCEA+CPAQAITIE+ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIV
Sbjct: 108 EERCIACKLCEAVCPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 166

Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           EGPNFEF+TET +EL Y+KE+LLNNGD+WE+EI  NI  D  YR
Sbjct: 167 EGPNFEFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADYLYR 210


>gi|154248544|ref|YP_001419502.1| NADH dehydrogenase subunit I [Xanthobacter autotrophicus Py2]
 gi|226737417|sp|A7IP99|NUOI_XANP2 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|154162629|gb|ABS69845.1| NADH-quinone oxidoreductase, chain I [Xanthobacter autotrophicus
           Py2]
          Length = 162

 Score =  188 bits (477), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 127/163 (77%), Positives = 137/163 (84%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M+        LFL E V  FFL +RYFFK K T+NYPFEKG  SPRFRGEHALRRYPNGE
Sbjct: 1   MK-LDQAARGLFLTELVSGFFLAMRYFFKPKATLNYPFEKGPLSPRFRGEHALRRYPNGE 59

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE+GPR +DGTRRT RYDIDM+KCIYCG CQEACPVDAIVE
Sbjct: 60  ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGFCQEACPVDAIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEFA ETR+ELYYDKE+LL NGDRWE EI R+I  D+PYR
Sbjct: 120 GPNFEFAAETREELYYDKEKLLANGDRWEREIARSIAMDAPYR 162


>gi|260462240|ref|ZP_05810484.1| NADH-quinone oxidoreductase, chain I [Mesorhizobium opportunistum
           WSM2075]
 gi|259032100|gb|EEW33367.1| NADH-quinone oxidoreductase, chain I [Mesorhizobium opportunistum
           WSM2075]
          Length = 163

 Score =  188 bits (477), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 128/163 (78%), Positives = 137/163 (84%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M         L L++FV AFFL +R FF  K TINYP EKG  SPRFRGEHALRRYPNGE
Sbjct: 1   MGALTQAAKSLLLQDFVSAFFLSMRQFFAPKETINYPHEKGPVSPRFRGEHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVE
Sbjct: 61  ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 120

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEFATETR+ELYYDK+RLL NGDRWE E+ RNI  DSPYR
Sbjct: 121 GPNFEFATETREELYYDKDRLLANGDRWERELARNISLDSPYR 163


>gi|114051372|ref|NP_001040316.1| NADH dehydrogenase ubiquinone Fe-S 8 [Bombyx mori]
 gi|87248369|gb|ABD36237.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8 [Bombyx mori]
          Length = 221

 Score =  188 bits (477), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 110/159 (69%), Positives = 121/159 (76%), Gaps = 1/159 (0%)

Query: 5   RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64
                 +F  E    F + L + FK   TINYPFEKG  SPRFRGEHALRRYP+GEERCI
Sbjct: 64  DRAAQTMFWTELARGFAVTLAHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEERCI 123

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           ACKLCEAICPAQAITIE+  R   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNF
Sbjct: 124 ACKLCEAICPAQAITIEAEERKD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNF 182

Query: 125 EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           EF TET +EL Y+KE+LL+NGD+WESEI  NI  D  YR
Sbjct: 183 EFTTETHEELLYNKEKLLSNGDKWESEIASNIRADHLYR 221


>gi|260833833|ref|XP_002611916.1| hypothetical protein BRAFLDRAFT_287714 [Branchiostoma floridae]
 gi|229297289|gb|EEN67925.1| hypothetical protein BRAFLDRAFT_287714 [Branchiostoma floridae]
          Length = 218

 Score =  188 bits (477), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 112/161 (69%), Positives = 126/161 (78%), Gaps = 1/161 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           I     + LFL E +    + + Y F+   TINYPFEKG  SPRFRGEHALRRYP+GEER
Sbjct: 59  ITDKAATTLFLTELIRGLSMAISYMFREPATINYPFEKGPLSPRFRGEHALRRYPSGEER 118

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCEAICPAQAITIE+ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGP
Sbjct: 119 CIACKLCEAICPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 177

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           NFEF+TET +EL Y+KE+LLNNGD+WESEI  N+  D  YR
Sbjct: 178 NFEFSTETHEELLYNKEKLLNNGDKWESEIAANLQADFLYR 218


>gi|163793195|ref|ZP_02187171.1| NADH dehydrogenase subunit I [alpha proteobacterium BAL199]
 gi|159181841|gb|EDP66353.1| NADH dehydrogenase subunit I [alpha proteobacterium BAL199]
          Length = 159

 Score =  188 bits (477), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 116/155 (74%), Positives = 129/155 (83%), Gaps = 1/155 (0%)

Query: 9   SFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKL 68
             L L E +    L LRYFF+ K TINYP+EKG  SPRFRGEH LRRYPNGEERCIACKL
Sbjct: 6   KSLLLAELLSGMSLTLRYFFRPKVTINYPYEKGPISPRFRGEHVLRRYPNGEERCIACKL 65

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
           CEAICPAQAITIE+ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFEFAT
Sbjct: 66  CEAICPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFAT 124

Query: 129 ETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           ETR+EL+Y+KE+LL NGDRWE+EI +N+  D+PYR
Sbjct: 125 ETREELFYNKEKLLANGDRWEAEISQNLTADAPYR 159


>gi|225707568|gb|ACO09630.1| NADH dehydrogenase iron-sulfur protein 8, mitochondrial precursor
           [Osmerus mordax]
          Length = 210

 Score =  188 bits (477), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 111/164 (67%), Positives = 124/164 (75%), Gaps = 2/164 (1%)

Query: 1   MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59
           M+ I       L   E      + + Y F+   TINYPFEKG  SPRFRGEHALRRYP+G
Sbjct: 48  MKSITDRAAQTLLWTELFRGLGMTMSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 107

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           EERCIACKLCEAICPAQAITIE+  R   G+RRT RYDIDM KCIYCG CQEACPVDAIV
Sbjct: 108 EERCIACKLCEAICPAQAITIEAETRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 166

Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           EGPNFEF+TET +EL Y+KE+LLNNGDRWE+EI  NI +D  YR
Sbjct: 167 EGPNFEFSTETHEELLYNKEKLLNNGDRWEAEIAANIQSDYLYR 210


>gi|326519500|dbj|BAK00123.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 223

 Score =  187 bits (476), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 115/161 (71%), Positives = 131/161 (81%), Gaps = 1/161 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           +F  +++ LFL E V    L L+YFF+ K TINYPFEKG  SPRFRGEHALRRY  GEER
Sbjct: 64  VFERSINTLFLTEMVRGLMLTLKYFFERKVTINYPFEKGPLSPRFRGEHALRRYDTGEER 123

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCEAICPAQAITIE+  R  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGP
Sbjct: 124 CIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 182

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           NFEF+TET +EL YDKE+LL NGDRWE+EI  N+ +++ YR
Sbjct: 183 NFEFSTETHEELLYDKEKLLENGDRWETEIAENLKSEALYR 223


>gi|11466496|ref|NP_044745.1| NADH dehydrogenase subunit 8 [Reclinomonas americana]
 gi|6225784|sp|O21233|NDUS8_RECAM RecName: Full=NADH-ubiquinone oxidoreductase subunit 8
 gi|2258326|gb|AAD11860.1| NADH dehydrogenase subunit 8 [Reclinomonas americana]
          Length = 162

 Score =  187 bits (476), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 117/163 (71%), Positives = 126/163 (77%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M I       LFL E V    L L YFF+ K T+NYPFEKG  SPRFRGEHALRRY  GE
Sbjct: 1   MTIINKTAQTLFLTELVKGMSLTLDYFFRKKVTLNYPFEKGPLSPRFRGEHALRRYQTGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIES PR   G+RRT RYDIDM KCIYCG CQEACPVDAIVE
Sbjct: 61  ERCIACKLCEAICPAQAITIESEPRID-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEFATET +EL YDKE+LL NGDRWE+EI  N+  ++ YR
Sbjct: 120 GPNFEFATETHEELLYDKEKLLQNGDRWETEIAANLANEALYR 162


>gi|23501697|ref|NP_697824.1| NADH dehydrogenase subunit I [Brucella suis 1330]
 gi|161618774|ref|YP_001592661.1| NADH dehydrogenase subunit I [Brucella canis ATCC 23365]
 gi|254704125|ref|ZP_05165953.1| NADH dehydrogenase subunit I [Brucella suis bv. 3 str. 686]
 gi|260566626|ref|ZP_05837096.1| NADH-quinone oxidoreductase subunit I [Brucella suis bv. 4 str. 40]
 gi|261754791|ref|ZP_05998500.1| NADH-quinone oxidoreductase subunit I [Brucella suis bv. 3 str.
           686]
 gi|81752799|sp|Q8G1A9|NUOI_BRUSU RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|189030924|sp|A9MAI7|NUOI_BRUC2 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|23347620|gb|AAN29739.1| NADH dehydrogenase I, I subunit [Brucella suis 1330]
 gi|161335585|gb|ABX61890.1| NADH-quinone oxidoreductase, chain I [Brucella canis ATCC 23365]
 gi|260156144|gb|EEW91224.1| NADH-quinone oxidoreductase subunit I [Brucella suis bv. 4 str. 40]
 gi|261744544|gb|EEY32470.1| NADH-quinone oxidoreductase subunit I [Brucella suis bv. 3 str.
           686]
          Length = 163

 Score =  187 bits (476), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 126/163 (77%), Positives = 135/163 (82%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M         L LKEF  AF L +R FF  K T+NYP EKG  SPRFRGEHALRRYPNGE
Sbjct: 1   MASITQAAKSLLLKEFASAFALSMRQFFAPKATLNYPHEKGPVSPRFRGEHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVE
Sbjct: 61  ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 120

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEFATETR+ELYYDK++LL NGDRWE EI RNI  D+PYR
Sbjct: 121 GPNFEFATETREELYYDKDKLLANGDRWEREIARNIAMDAPYR 163


>gi|283046736|ref|NP_001164315.1| NADH:ubiquinone reductase 23kD subunit precursor [Tribolium
           castaneum]
 gi|270009224|gb|EFA05672.1| hypothetical protein TcasGA2_TC015022 [Tribolium castaneum]
          Length = 212

 Score =  187 bits (476), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 112/161 (69%), Positives = 124/161 (77%), Gaps = 1/161 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           +       +F  E V  F + L + FK   TINYPFEKG  SPRFRGEHALRRYP+GEER
Sbjct: 53  VTDRAAEKVFFTELVRGFAVTLAHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEER 112

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCEAICPAQAITIE+  R   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGP
Sbjct: 113 CIACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 171

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           NFEF+TET +EL Y+KE+LLNNGD+WESEI  NI  D  YR
Sbjct: 172 NFEFSTETHEELLYNKEKLLNNGDKWESEIAANIHADHLYR 212


>gi|62289759|ref|YP_221552.1| NADH dehydrogenase subunit I [Brucella abortus bv. 1 str. 9-941]
 gi|82699687|ref|YP_414261.1| NADH dehydrogenase subunit I [Brucella melitensis biovar Abortus
           2308]
 gi|148560593|ref|YP_001258788.1| NADH dehydrogenase subunit I [Brucella ovis ATCC 25840]
 gi|189024004|ref|YP_001934772.1| NADH dehydrogenase subunit I [Brucella abortus S19]
 gi|225627307|ref|ZP_03785344.1| NADH-quinone oxidoreductase, chain I [Brucella ceti str. Cudo]
 gi|225852326|ref|YP_002732559.1| NADH dehydrogenase subunit I [Brucella melitensis ATCC 23457]
 gi|237815246|ref|ZP_04594244.1| NADH-quinone oxidoreductase, chain I [Brucella abortus str. 2308 A]
 gi|254689066|ref|ZP_05152320.1| NADH dehydrogenase subunit I [Brucella abortus bv. 6 str. 870]
 gi|254693548|ref|ZP_05155376.1| NADH dehydrogenase subunit I [Brucella abortus bv. 3 str. Tulya]
 gi|254697200|ref|ZP_05159028.1| NADH dehydrogenase subunit I [Brucella abortus bv. 2 str. 86/8/59]
 gi|254701578|ref|ZP_05163406.1| NADH dehydrogenase subunit I [Brucella suis bv. 5 str. 513]
 gi|254706975|ref|ZP_05168803.1| NADH dehydrogenase subunit I [Brucella pinnipedialis M163/99/10]
 gi|254709918|ref|ZP_05171729.1| NADH dehydrogenase subunit I [Brucella pinnipedialis B2/94]
 gi|254713919|ref|ZP_05175730.1| NADH dehydrogenase subunit I [Brucella ceti M644/93/1]
 gi|254717023|ref|ZP_05178834.1| NADH dehydrogenase subunit I [Brucella ceti M13/05/1]
 gi|254718919|ref|ZP_05180730.1| NADH dehydrogenase subunit I [Brucella sp. 83/13]
 gi|254730096|ref|ZP_05188674.1| NADH dehydrogenase subunit I [Brucella abortus bv. 4 str. 292]
 gi|256031411|ref|ZP_05445025.1| NADH dehydrogenase subunit I [Brucella pinnipedialis M292/94/1]
 gi|256060922|ref|ZP_05451080.1| NADH dehydrogenase subunit I [Brucella neotomae 5K33]
 gi|256113345|ref|ZP_05454203.1| NADH dehydrogenase subunit I [Brucella melitensis bv. 3 str. Ether]
 gi|256159532|ref|ZP_05457300.1| NADH dehydrogenase subunit I [Brucella ceti M490/95/1]
 gi|256254819|ref|ZP_05460355.1| NADH dehydrogenase subunit I [Brucella ceti B1/94]
 gi|256257315|ref|ZP_05462851.1| NADH dehydrogenase subunit I [Brucella abortus bv. 9 str. C68]
 gi|256264175|ref|ZP_05466707.1| NADH-quinone oxidoreductase subunit I [Brucella melitensis bv. 2
           str. 63/9]
 gi|256369242|ref|YP_003106750.1| NADH dehydrogenase subunit I [Brucella microti CCM 4915]
 gi|260168545|ref|ZP_05755356.1| NADH dehydrogenase subunit I [Brucella sp. F5/99]
 gi|260545491|ref|ZP_05821232.1| NADH-quinone oxidoreductase subunit I [Brucella abortus NCTC 8038]
 gi|260754564|ref|ZP_05866912.1| NDH-1 subunit I [Brucella abortus bv. 6 str. 870]
 gi|260757785|ref|ZP_05870133.1| NDH-1 subunit I [Brucella abortus bv. 4 str. 292]
 gi|260761610|ref|ZP_05873953.1| NDH-1 subunit I [Brucella abortus bv. 2 str. 86/8/59]
 gi|260883591|ref|ZP_05895205.1| NADH-quinone oxidoreductase subunit I [Brucella abortus bv. 9 str.
           C68]
 gi|261213813|ref|ZP_05928094.1| NDH-1 subunit I [Brucella abortus bv. 3 str. Tulya]
 gi|261218830|ref|ZP_05933111.1| NADH-quinone oxidoreductase subunit I [Brucella ceti M13/05/1]
 gi|261222000|ref|ZP_05936281.1| NADH-quinone oxidoreductase subunit I [Brucella ceti B1/94]
 gi|261314438|ref|ZP_05953635.1| NADH-quinone oxidoreductase subunit I [Brucella pinnipedialis
           M163/99/10]
 gi|261317464|ref|ZP_05956661.1| NADH-quinone oxidoreductase subunit I [Brucella pinnipedialis
           B2/94]
 gi|261321671|ref|ZP_05960868.1| NADH-quinone oxidoreductase subunit I [Brucella ceti M644/93/1]
 gi|261324922|ref|ZP_05964119.1| NADH-quinone oxidoreductase subunit I [Brucella neotomae 5K33]
 gi|261752131|ref|ZP_05995840.1| NADH-quinone oxidoreductase subunit I [Brucella suis bv. 5 str.
           513]
 gi|261758018|ref|ZP_06001727.1| NADH dehydrogenase subunit I [Brucella sp. F5/99]
 gi|265983906|ref|ZP_06096641.1| NADH-quinone oxidoreductase subunit I [Brucella sp. 83/13]
 gi|265988500|ref|ZP_06101057.1| NADH-quinone oxidoreductase subunit I [Brucella pinnipedialis
           M292/94/1]
 gi|265994751|ref|ZP_06107308.1| NADH-quinone oxidoreductase subunit I [Brucella melitensis bv. 3
           str. Ether]
 gi|265997964|ref|ZP_06110521.1| NADH-quinone oxidoreductase subunit I [Brucella ceti M490/95/1]
 gi|294852167|ref|ZP_06792840.1| NADH dehydrogenase I subunit I [Brucella sp. NVSL 07-0026]
 gi|297248164|ref|ZP_06931882.1| NADH dehydrogenase I subunit I [Brucella abortus bv. 5 str. B3196]
 gi|306838233|ref|ZP_07471085.1| NADH-quinone oxidoreductase, chain I [Brucella sp. NF 2653]
 gi|306841952|ref|ZP_07474630.1| NADH-quinone oxidoreductase, chain I [Brucella sp. BO2]
 gi|306843747|ref|ZP_07476346.1| NADH-quinone oxidoreductase, chain I [Brucella sp. BO1]
 gi|75505301|sp|Q57DU3|NUOI_BRUAB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|115502518|sp|Q2YNF5|NUOI_BRUA2 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|166918785|sp|A5VPZ1|NUOI_BRUO2 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|226737383|sp|B2S551|NUOI_BRUA1 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|254767832|sp|C0RIE7|NUOI_BRUMB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|62195891|gb|AAX74191.1| NuoI, NADH dehydrogenase I, I subunit [Brucella abortus bv. 1 str.
           9-941]
 gi|82615788|emb|CAJ10786.1| 7Fe ferredoxin:3Fe-4S ferredoxin:4Fe-4S ferredoxin, iron-sulfur
           binding domain [Brucella melitensis biovar Abortus 2308]
 gi|148371850|gb|ABQ61829.1| NADH dehydrogenase I, I subunit [Brucella ovis ATCC 25840]
 gi|189019576|gb|ACD72298.1| 7Fe ferredoxin [Brucella abortus S19]
 gi|225617312|gb|EEH14357.1| NADH-quinone oxidoreductase, chain I [Brucella ceti str. Cudo]
 gi|225640691|gb|ACO00605.1| NADH-quinone oxidoreductase, chain I [Brucella melitensis ATCC
           23457]
 gi|237790083|gb|EEP64293.1| NADH-quinone oxidoreductase, chain I [Brucella abortus str. 2308 A]
 gi|255999402|gb|ACU47801.1| NADH dehydrogenase subunit I [Brucella microti CCM 4915]
 gi|260096898|gb|EEW80773.1| NADH-quinone oxidoreductase subunit I [Brucella abortus NCTC 8038]
 gi|260668103|gb|EEX55043.1| NDH-1 subunit I [Brucella abortus bv. 4 str. 292]
 gi|260672042|gb|EEX58863.1| NDH-1 subunit I [Brucella abortus bv. 2 str. 86/8/59]
 gi|260674672|gb|EEX61493.1| NDH-1 subunit I [Brucella abortus bv. 6 str. 870]
 gi|260873119|gb|EEX80188.1| NADH-quinone oxidoreductase subunit I [Brucella abortus bv. 9 str.
           C68]
 gi|260915420|gb|EEX82281.1| NDH-1 subunit I [Brucella abortus bv. 3 str. Tulya]
 gi|260920584|gb|EEX87237.1| NADH-quinone oxidoreductase subunit I [Brucella ceti B1/94]
 gi|260923919|gb|EEX90487.1| NADH-quinone oxidoreductase subunit I [Brucella ceti M13/05/1]
 gi|261294361|gb|EEX97857.1| NADH-quinone oxidoreductase subunit I [Brucella ceti M644/93/1]
 gi|261296687|gb|EEY00184.1| NADH-quinone oxidoreductase subunit I [Brucella pinnipedialis
           B2/94]
 gi|261300902|gb|EEY04399.1| NADH-quinone oxidoreductase subunit I [Brucella neotomae 5K33]
 gi|261303464|gb|EEY06961.1| NADH-quinone oxidoreductase subunit I [Brucella pinnipedialis
           M163/99/10]
 gi|261738002|gb|EEY25998.1| NADH dehydrogenase subunit I [Brucella sp. F5/99]
 gi|261741884|gb|EEY29810.1| NADH-quinone oxidoreductase subunit I [Brucella suis bv. 5 str.
           513]
 gi|262552432|gb|EEZ08422.1| NADH-quinone oxidoreductase subunit I [Brucella ceti M490/95/1]
 gi|262765864|gb|EEZ11653.1| NADH-quinone oxidoreductase subunit I [Brucella melitensis bv. 3
           str. Ether]
 gi|263094393|gb|EEZ18238.1| NADH-quinone oxidoreductase subunit I [Brucella melitensis bv. 2
           str. 63/9]
 gi|264660697|gb|EEZ30958.1| NADH-quinone oxidoreductase subunit I [Brucella pinnipedialis
           M292/94/1]
 gi|264662498|gb|EEZ32759.1| NADH-quinone oxidoreductase subunit I [Brucella sp. 83/13]
 gi|294820756|gb|EFG37755.1| NADH dehydrogenase I subunit I [Brucella sp. NVSL 07-0026]
 gi|297175333|gb|EFH34680.1| NADH dehydrogenase I subunit I [Brucella abortus bv. 5 str. B3196]
 gi|306275938|gb|EFM57651.1| NADH-quinone oxidoreductase, chain I [Brucella sp. BO1]
 gi|306287985|gb|EFM59393.1| NADH-quinone oxidoreductase, chain I [Brucella sp. BO2]
 gi|306406677|gb|EFM62904.1| NADH-quinone oxidoreductase, chain I [Brucella sp. NF 2653]
 gi|326408833|gb|ADZ65898.1| 7Fe ferredoxin [Brucella melitensis M28]
 gi|326538549|gb|ADZ86764.1| NADH-quinone oxidoreductase, chain I [Brucella melitensis M5-90]
          Length = 163

 Score =  187 bits (476), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 126/163 (77%), Positives = 135/163 (82%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M         L LKEF  AF L +R FF  K T+NYP EKG  SPRFRGEHALRRYPNGE
Sbjct: 1   MASIAQAAKSLLLKEFASAFALSMRQFFAPKATLNYPHEKGPVSPRFRGEHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVE
Sbjct: 61  ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 120

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEFATETR+ELYYDK++LL NGDRWE EI RNI  D+PYR
Sbjct: 121 GPNFEFATETREELYYDKDKLLANGDRWEREIARNIAMDAPYR 163


>gi|145255608|ref|XP_001399017.1| NADH-ubiquinone oxidoreductase subunit [Aspergillus niger CBS
           513.88]
 gi|134084609|emb|CAK97485.1| unnamed protein product [Aspergillus niger]
          Length = 224

 Score =  187 bits (476), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 104/160 (65%), Positives = 119/160 (74%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
                 +  + E +   ++ L  FF+   TI YPFEKG  SPRFRGEHALRRYP GEERC
Sbjct: 66  LDKAGKYFLMAELLRGMYVVLEQFFRPPYTIFYPFEKGPISPRFRGEHALRRYPTGEERC 125

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAITIE+  R  DG+RRT RYDIDM KCIYCG CQE+CPVDAIVE  N
Sbjct: 126 IACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGYCQESCPVDAIVETSN 184

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            E+ATETR+EL Y+KE+LL NGD+WE EI   I  D+PYR
Sbjct: 185 AEYATETREELLYNKEKLLANGDKWEPEIAAAIRADAPYR 224


>gi|307942127|ref|ZP_07657478.1| NADH-quinone oxidoreductase subunit i 2 [Roseibium sp. TrichSKD4]
 gi|307774413|gb|EFO33623.1| NADH-quinone oxidoreductase subunit i 2 [Roseibium sp. TrichSKD4]
          Length = 162

 Score =  187 bits (476), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 130/160 (81%), Positives = 138/160 (86%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
                  L LKEFV AFFL +RYFFK K T+NYPFEKG  SPRFRGEHALRRYPNGEERC
Sbjct: 3   LDQAAKSLLLKEFVSAFFLAMRYFFKPKPTVNYPFEKGPVSPRFRGEHALRRYPNGEERC 62

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAITIE+GPR +DGTRRT RYDIDM+KCIYCG CQEACPVDAIVEGPN
Sbjct: 63  IACKLCEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGFCQEACPVDAIVEGPN 122

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FEFATETR+ELYY+KERLL NGDRWE EI RNI  D+PYR
Sbjct: 123 FEFATETREELYYNKERLLANGDRWEREIARNIEMDAPYR 162


>gi|212528252|ref|XP_002144283.1| NADH-quinone oxidoreductase, 23 kDa subunit, putative [Penicillium
           marneffei ATCC 18224]
 gi|210073681|gb|EEA27768.1| NADH-quinone oxidoreductase, 23 kDa subunit, putative [Penicillium
           marneffei ATCC 18224]
          Length = 225

 Score =  187 bits (476), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 103/160 (64%), Positives = 119/160 (74%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
                 +  + E     ++ L  FF+   TI YPFEKG  SPRFRGEHALRRYP+GEERC
Sbjct: 67  LDKATKYFLMAELFRGMYVVLEQFFRPPYTIFYPFEKGPISPRFRGEHALRRYPSGEERC 126

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAITIE+  R  DG+RRT RYDIDM KCIYCG CQE+CPVDAIVE PN
Sbjct: 127 IACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGYCQESCPVDAIVESPN 185

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            E+ATETR+EL Y+KE+LL NGD+WE E+      D+PYR
Sbjct: 186 AEYATETREELLYNKEKLLANGDKWEPELAAVARADAPYR 225


>gi|163759532|ref|ZP_02166617.1| NADH dehydrogenase subunit I [Hoeflea phototrophica DFL-43]
 gi|162283129|gb|EDQ33415.1| NADH dehydrogenase subunit I [Hoeflea phototrophica DFL-43]
          Length = 162

 Score =  187 bits (476), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 133/158 (84%), Positives = 141/158 (89%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
                LFLKEFVGAFFL +RYFFK K T+NYP+EKG  SPRFRGEHALRRYPNGEERCIA
Sbjct: 5   QAAKSLFLKEFVGAFFLSMRYFFKPKATVNYPYEKGPVSPRFRGEHALRRYPNGEERCIA 64

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVEGPNFE
Sbjct: 65  CKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVEGPNFE 124

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FATETR+ELYYDK+RLL NGDRWE EI RNI  DSPYR
Sbjct: 125 FATETREELYYDKDRLLANGDRWEREIARNIAIDSPYR 162


>gi|209885060|ref|YP_002288917.1| i subunit of NADH-quinone oxidoreductase [Oligotropha
           carboxidovorans OM5]
 gi|226737405|sp|B6JH51|NUOI_OLICO RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|209873256|gb|ACI93052.1| i subunit of NADH-quinone oxidoreductase [Oligotropha
           carboxidovorans OM5]
          Length = 162

 Score =  187 bits (476), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 129/158 (81%), Positives = 138/158 (87%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
             V+ L LKEF  AF + +RYFFK K T+NYPFEK   SPRFRGEHALRRYPNGEERCIA
Sbjct: 5   SAVNSLLLKEFAAAFVVTMRYFFKPKPTVNYPFEKNPISPRFRGEHALRRYPNGEERCIA 64

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCGLCQEACPVDAIVEGPNFE
Sbjct: 65  CKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGLCQEACPVDAIVEGPNFE 124

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FATETR+ELYYDK RLL NGDRWE EI RNI  D+PYR
Sbjct: 125 FATETREELYYDKARLLANGDRWEREIARNIEQDAPYR 162


>gi|85717021|ref|ZP_01047983.1| NADH dehydrogenase subunit I [Nitrobacter sp. Nb-311A]
 gi|85696145|gb|EAQ34041.1| NADH dehydrogenase subunit I [Nitrobacter sp. Nb-311A]
          Length = 162

 Score =  187 bits (476), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 127/162 (78%), Positives = 137/162 (84%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
                    L L EF+ AFFL +RYFFK K TINYPFEK   SPRFRGEHALRRYPNGEE
Sbjct: 1   MSINATARSLLLTEFISAFFLTMRYFFKPKPTINYPFEKNPISPRFRGEHALRRYPNGEE 60

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCGLCQEACPVDAIVEG
Sbjct: 61  RCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGLCQEACPVDAIVEG 120

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           PNFEFATETR+ELYYDK++LL NGDRWE EI + I  D+PYR
Sbjct: 121 PNFEFATETREELYYDKDKLLANGDRWEREIAKAIELDAPYR 162


>gi|299135024|ref|ZP_07028215.1| NADH-quinone oxidoreductase, chain I [Afipia sp. 1NLS2]
 gi|298590001|gb|EFI50205.1| NADH-quinone oxidoreductase, chain I [Afipia sp. 1NLS2]
          Length = 162

 Score =  187 bits (476), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 128/158 (81%), Positives = 138/158 (87%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
             V+ L LKEF  AF + +RYFFK K T+NYPFEK   SPRFRGEHALRRYPNGEERCIA
Sbjct: 5   SAVNSLLLKEFAAAFVVTMRYFFKPKPTVNYPFEKNPISPRFRGEHALRRYPNGEERCIA 64

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCGLCQEACPVDAIVEGPNFE
Sbjct: 65  CKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGLCQEACPVDAIVEGPNFE 124

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FATETR+ELYYDK RLL NGDRWE EI +NI  D+PYR
Sbjct: 125 FATETREELYYDKARLLANGDRWEREIAKNIEQDAPYR 162


>gi|54611544|gb|AAH21616.2| NADH dehydrogenase (ubiquinone) Fe-S protein 8 [Mus musculus]
          Length = 212

 Score =  187 bits (476), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 110/159 (69%), Positives = 122/159 (76%), Gaps = 1/159 (0%)

Query: 5   RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64
                 L   E +    + L Y F+   TINYPFEKG  SPRFRGEHALRRYP+GEERCI
Sbjct: 55  DSAARILMWTELIRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSGEERCI 114

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           ACKLCEAICPAQAITIE+ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNF
Sbjct: 115 ACKLCEAICPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNF 173

Query: 125 EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           EF+TET +EL Y+KE+LLNNGD+WE+EI  NI  D  YR
Sbjct: 174 EFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADYLYR 212


>gi|46195430|ref|NP_659119.2| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial precursor [Mus musculus]
 gi|47117242|sp|Q8K3J1|NDUS8_MOUSE RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           8, mitochondrial; AltName: Full=Complex I-23kD;
           Short=CI-23kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 23 kDa subunit; Flags: Precursor
 gi|22074762|gb|AAM34451.1| NADH dehydrogenase:ubiquinone Fe-S protein 8 [Mus musculus]
 gi|56540975|gb|AAH86766.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8 [Mus musculus]
 gi|74139889|dbj|BAE31784.1| unnamed protein product [Mus musculus]
 gi|74150399|dbj|BAE32243.1| unnamed protein product [Mus musculus]
 gi|74204045|dbj|BAE29018.1| unnamed protein product [Mus musculus]
 gi|74204318|dbj|BAE39914.1| unnamed protein product [Mus musculus]
 gi|74227922|dbj|BAE37960.1| unnamed protein product [Mus musculus]
 gi|148701022|gb|EDL32969.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, isoform CRA_a [Mus
           musculus]
 gi|148701023|gb|EDL32970.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, isoform CRA_a [Mus
           musculus]
          Length = 212

 Score =  187 bits (475), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 110/159 (69%), Positives = 122/159 (76%), Gaps = 1/159 (0%)

Query: 5   RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64
                 L   E +    + L Y F+   TINYPFEKG  SPRFRGEHALRRYP+GEERCI
Sbjct: 55  DNAARILMWTELIRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSGEERCI 114

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           ACKLCEAICPAQAITIE+ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNF
Sbjct: 115 ACKLCEAICPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNF 173

Query: 125 EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           EF+TET +EL Y+KE+LLNNGD+WE+EI  NI  D  YR
Sbjct: 174 EFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADYLYR 212


>gi|162148803|ref|YP_001603264.1| NADH dehydrogenase subunit I [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209545449|ref|YP_002277678.1| NADH dehydrogenase subunit I [Gluconacetobacter diazotrophicus PAl
           5]
 gi|161787380|emb|CAP56975.1| NADH-quinone oxidoreductase chain I [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209533126|gb|ACI53063.1| NADH-quinone oxidoreductase, chain I [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 162

 Score =  187 bits (475), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 112/163 (68%), Positives = 125/163 (76%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M  F   V    L E V       +  FK K TINYP+EKG  SPRFRGEHALRRYPNGE
Sbjct: 1   MGHFDRTVRSFLLAELVAGMGATFKAMFKPKVTINYPYEKGPLSPRFRGEHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA CPA+AITIES PR   G+RRT RYDIDM KCIYCGLC+EACPVDAIVE
Sbjct: 61  ERCIACKLCEATCPAEAITIESEPRDD-GSRRTTRYDIDMTKCIYCGLCEEACPVDAIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPN+EFATETR+EL Y+K++LL NGDRWES + R +  D+PYR
Sbjct: 120 GPNYEFATETREELMYNKDKLLANGDRWESVLARRLELDAPYR 162


>gi|328773488|gb|EGF83525.1| hypothetical protein BATDEDRAFT_15687 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 223

 Score =  187 bits (475), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 109/161 (67%), Positives = 124/161 (77%), Gaps = 1/161 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           +       +FL E +   F+     FK   TI YPFEKG  SPRFRGEHALRRYP GEER
Sbjct: 64  VLDRVAQEMFLTEILRTMFVVFEQMFKPPYTIMYPFEKGPLSPRFRGEHALRRYPTGEER 123

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCEAICPAQAITIE+ PR  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGP
Sbjct: 124 CIACKLCEAICPAQAITIEAEPR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 182

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           NFE++TET +EL Y+KE+LL+NGD+WE EI RN+ +D  YR
Sbjct: 183 NFEYSTETHEELLYNKEKLLSNGDKWEVEIARNLKSDHLYR 223


>gi|114327958|ref|YP_745115.1| NADH dehydrogenase subunit I [Granulibacter bethesdensis CGDNIH1]
 gi|122327080|sp|Q0BSL0|NUOI_GRABC RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|114316132|gb|ABI62192.1| NADH-quinone oxidoreductase chain I [Granulibacter bethesdensis
           CGDNIH1]
          Length = 162

 Score =  187 bits (475), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 112/163 (68%), Positives = 125/163 (76%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M +         L E V    L L+YFFK K TINYP+EK   SPRF+GEHALRRY NGE
Sbjct: 1   MALLDRTARSFLLTEIVSGMALTLKYFFKPKATINYPYEKNPISPRFKGEHALRRYANGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIE+ PR   G+RRT RYDIDM KCIYCGLC+EACPVDAIVE
Sbjct: 61  ERCIACKLCEAVCPALAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGLCEEACPVDAIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPN EFATETR+EL Y+K+RLL NGDRWE EI R +  D+PYR
Sbjct: 120 GPNLEFATETREELMYNKDRLLANGDRWEPEIARRLELDAPYR 162


>gi|110633384|ref|YP_673592.1| NADH dehydrogenase subunit I [Mesorhizobium sp. BNC1]
 gi|122966121|sp|Q11JJ8|NUOI_MESSB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|110284368|gb|ABG62427.1| NADH dehydrogenase subunit I [Chelativorans sp. BNC1]
          Length = 163

 Score =  187 bits (475), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 125/163 (76%), Positives = 135/163 (82%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M         L LKEF GA  L +R FF  K T+NYP EKG  SPRFRGEHALRRYPNGE
Sbjct: 1   MSALAQAAKSLLLKEFFGAVVLSMRQFFAPKATLNYPHEKGPLSPRFRGEHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVE
Sbjct: 61  ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 120

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEFATETR+ELYYDK++LL NGDRWE E+ RNI  D+PYR
Sbjct: 121 GPNFEFATETREELYYDKDKLLANGDRWERELARNIALDAPYR 163


>gi|85708744|ref|ZP_01039810.1| NADH dehydrogenase subunit I [Erythrobacter sp. NAP1]
 gi|85690278|gb|EAQ30281.1| NADH dehydrogenase subunit I [Erythrobacter sp. NAP1]
          Length = 162

 Score =  187 bits (475), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 116/163 (71%), Positives = 128/163 (78%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M      +    L EF+ A  L L+YFFK K TINYPFEK   SPRFRGEHALRRYPNGE
Sbjct: 1   MSTATQLLKSFTLWEFLKAHSLTLKYFFKPKVTINYPFEKSPLSPRFRGEHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPAQAITIE+ PR  DG+RRT RYDIDM KCIYCG CQEACPVDAIVE
Sbjct: 61  ERCIACKLCEAVCPAQAITIEAEPR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFE+ATETR+EL YDK +LL NGD+WE  I  N+  D+PYR
Sbjct: 120 GPNFEYATETREELLYDKAKLLANGDKWERAIAANLEADAPYR 162


>gi|168027577|ref|XP_001766306.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162682520|gb|EDQ68938.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 225

 Score =  187 bits (475), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 115/161 (71%), Positives = 129/161 (80%), Gaps = 1/161 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           +   +V+ LFL E      L L+YFF+ K TINYPFEKG  SPRFRGEHALRRYP GEER
Sbjct: 66  VLDHSVNTLFLSEMARGMGLALKYFFEKKVTINYPFEKGPLSPRFRGEHALRRYPTGEER 125

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCEA+CPAQAITIE+  R  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGP
Sbjct: 126 CIACKLCEAVCPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 184

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           NFEF TET +EL YDKE+LL NGDRWE+EI  N+ ++S YR
Sbjct: 185 NFEFTTETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 225


>gi|330994062|ref|ZP_08317992.1| NADH-quinone oxidoreductase subunit I [Gluconacetobacter sp.
           SXCC-1]
 gi|329759008|gb|EGG75522.1| NADH-quinone oxidoreductase subunit I [Gluconacetobacter sp.
           SXCC-1]
          Length = 162

 Score =  187 bits (475), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 111/163 (68%), Positives = 127/163 (77%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M         + L E V    + L+ FFK K TINYP+EKG  SPRFRGEHALRRYPNGE
Sbjct: 1   MGTLSKAARSMLLSELVAGMGVTLKAFFKPKATINYPYEKGVLSPRFRGEHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA CPA+AITIE+ PR   G+RRT RYDIDM KCIYCGLC+EACPVDAIVE
Sbjct: 61  ERCIACKLCEATCPAEAITIEAEPRDD-GSRRTTRYDIDMTKCIYCGLCEEACPVDAIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPN+EFATETR+EL Y+K++LL NGDRWES + R +  D+PYR
Sbjct: 120 GPNYEFATETREELMYNKDKLLANGDRWESVLARRLELDAPYR 162


>gi|121702465|ref|XP_001269497.1| NADH-quinone oxidoreductase, 23 kDa subunit, putative [Aspergillus
           clavatus NRRL 1]
 gi|119397640|gb|EAW08071.1| NADH-quinone oxidoreductase, 23 kDa subunit, putative [Aspergillus
           clavatus NRRL 1]
          Length = 228

 Score =  187 bits (475), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 102/160 (63%), Positives = 118/160 (73%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
                 +  + E     ++ +  FF+   TI YPFEKG  SPRFRGEHALRRYP GEERC
Sbjct: 70  LDKASKYFLMAELFRGMYVVMEQFFRPPYTIFYPFEKGPISPRFRGEHALRRYPTGEERC 129

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAITIE+  R  DG+RRT RYDIDM KCIYCG CQE+CPVDAIVE  N
Sbjct: 130 IACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGYCQESCPVDAIVETSN 188

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            E+ATETR+EL Y+KE+LL NGD+WE E+   I  D+PYR
Sbjct: 189 AEYATETREELLYNKEKLLANGDKWEPELAATIRADAPYR 228


>gi|288958981|ref|YP_003449322.1| NADH dehydrogenase I chain I [Azospirillum sp. B510]
 gi|288911289|dbj|BAI72778.1| NADH dehydrogenase I chain I [Azospirillum sp. B510]
          Length = 162

 Score =  187 bits (475), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 108/163 (66%), Positives = 125/163 (76%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M         LFL E V    L  RY FK K TINYP+EKG  S RFRGEH LRRY +GE
Sbjct: 1   MAFLDRAARSLFLTELVCGMALTFRYMFKPKVTINYPYEKGPISSRFRGEHVLRRYASGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIE+ PR   G+RRT RYDIDM KCIYCGLCQEACPVDA+V 
Sbjct: 61  ERCIACKLCEAVCPALAITIEAEPRDD-GSRRTTRYDIDMTKCIYCGLCQEACPVDAVVM 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEF+TE R+EL+Y+K++LL NGDRWE+EI +N+  ++PYR
Sbjct: 120 GPNFEFSTENREELFYNKQKLLANGDRWEAEIAQNLAAEAPYR 162


>gi|17944955|gb|AAL48541.1| RE02647p [Drosophila melanogaster]
          Length = 217

 Score =  187 bits (475), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 110/161 (68%), Positives = 123/161 (76%), Gaps = 1/161 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           I     S +F  E +  F + L + FK   TINYPFEKG  SPRFRGEHALRRYP+GEER
Sbjct: 58  ITDRAASTMFFGELLRGFAVTLAHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEER 117

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCEAICPAQAITIE+  R   G+RRT RYDIDM KCIYCG CQEACPV AIVEGP
Sbjct: 118 CIACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQEACPVGAIVEGP 176

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           NFEF+TET +EL Y+KE+LL NGD+WESEI  N+  D  YR
Sbjct: 177 NFEFSTETHEELLYNKEKLLCNGDKWESEIASNLQADHLYR 217


>gi|294083719|ref|YP_003550476.1| NADH-quinone oxidoreductase subunit I [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663291|gb|ADE38392.1| NADH-quinone oxidoreductase, chain I [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 162

 Score =  187 bits (475), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 119/163 (73%), Positives = 133/163 (81%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           MR+   ++    L E     FL L+YFFK K TINYP+EKGS SPRFRGEHALRRYPNGE
Sbjct: 1   MRMLMDSIKSFLLLELAKGMFLTLKYFFKPKVTINYPYEKGSLSPRFRGEHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPAQAITIE+ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIVE
Sbjct: 61  ERCIACKLCEAVCPAQAITIEAEPRDD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEFATETR+ELYYDK +LL NGDRWE+EI RN+  D+ +R
Sbjct: 120 GPNFEFATETREELYYDKNKLLANGDRWETEIARNLAADAEWR 162


>gi|163843083|ref|YP_001627487.1| NADH dehydrogenase subunit I [Brucella suis ATCC 23445]
 gi|189030925|sp|B0CLD7|NUOI_BRUSI RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|163673806|gb|ABY37917.1| NADH-quinone oxidoreductase, chain I [Brucella suis ATCC 23445]
          Length = 163

 Score =  187 bits (474), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 126/163 (77%), Positives = 135/163 (82%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M         L LKEF  AF L +R FF  K T+NYP EKG  SPRFRGEHALRRYPNGE
Sbjct: 1   MASITQAAKSLLLKEFASAFALSMRQFFAPKATLNYPHEKGPVSPRFRGEHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVE
Sbjct: 61  ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 120

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEFATETR+ELYYDK++LL NGDRWE EI RNI  D+PYR
Sbjct: 121 GPNFEFATETREELYYDKDKLLANGDRWELEIARNIAMDAPYR 163


>gi|75676070|ref|YP_318491.1| NADH dehydrogenase subunit I [Nitrobacter winogradskyi Nb-255]
 gi|115502535|sp|Q3SRF2|NUOI_NITWN RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|74420940|gb|ABA05139.1| NADH dehydrogenase subunit I [Nitrobacter winogradskyi Nb-255]
          Length = 162

 Score =  187 bits (474), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 126/162 (77%), Positives = 136/162 (83%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
                    L L EF+ AFFL +RYFFK K TINYPFEK   SPRFRGEHALRRYPNGEE
Sbjct: 1   MSINATARSLLLTEFISAFFLTMRYFFKPKPTINYPFEKNPISPRFRGEHALRRYPNGEE 60

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLCEA+CPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCGLCQEACPVDAIVEG
Sbjct: 61  RCIACKLCEAVCPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGLCQEACPVDAIVEG 120

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           PNFEFATETR+ELYYDK +LL NGDRWE EI + I  D+PYR
Sbjct: 121 PNFEFATETREELYYDKAKLLANGDRWEREIAKAIELDAPYR 162


>gi|327291045|ref|XP_003230232.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial-like [Anolis carolinensis]
          Length = 208

 Score =  187 bits (474), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 110/162 (67%), Positives = 123/162 (75%), Gaps = 1/162 (0%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
            I       L   E +    + + Y F+   TINYPFEKG  SPRFRGEHALRRYP+GEE
Sbjct: 48  SITDKAAQTLLWTELIRGLAMTMSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSGEE 107

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLCEAICPAQAITIE+ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIVEG
Sbjct: 108 RCIACKLCEAICPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 166

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           PNFEF+TET +EL Y+KE+LLNNGD+WE+EI  NI  D  YR
Sbjct: 167 PNFEFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADYLYR 208


>gi|17864306|ref|NP_524719.1| NADH:ubiquinone reductase 23kD subunit precursor [Drosophila
           melanogaster]
 gi|7300064|gb|AAF55234.1| NADH:ubiquinone reductase 23kD subunit precursor [Drosophila
           melanogaster]
 gi|16768338|gb|AAL28388.1| GM02062p [Drosophila melanogaster]
 gi|220942892|gb|ACL83989.1| ND23-PA [synthetic construct]
 gi|220953000|gb|ACL89043.1| ND23-PA [synthetic construct]
          Length = 217

 Score =  187 bits (474), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 111/161 (68%), Positives = 124/161 (77%), Gaps = 1/161 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           I     S +F  E +  F + L + FK   TINYPFEKG  SPRFRGEHALRRYP+GEER
Sbjct: 58  ITDRAASTMFFGELLRGFAVTLAHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEER 117

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCEAICPAQAITIE+  R   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGP
Sbjct: 118 CIACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 176

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           NFEF+TET +EL Y+KE+LL NGD+WESEI  N+  D  YR
Sbjct: 177 NFEFSTETHEELLYNKEKLLCNGDKWESEIASNLQADHLYR 217


>gi|328543695|ref|YP_004303804.1| NADH-quinone oxidoreductase subunit I [polymorphum gilvum
           SL003B-26A1]
 gi|326413439|gb|ADZ70502.1| NADH-quinone oxidoreductase subunit I [Polymorphum gilvum
           SL003B-26A1]
          Length = 162

 Score =  187 bits (474), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 130/160 (81%), Positives = 138/160 (86%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
                  LFLKEFV AFFL +RYFFK K T+NYPFEKG  SPRFRGEHALRRYPNGEERC
Sbjct: 3   LDQAAKSLFLKEFVSAFFLAMRYFFKPKPTLNYPFEKGPVSPRFRGEHALRRYPNGEERC 62

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAITIE+GPR +DGTRRT RYDIDM+KCIYCG CQEACPVDAIVEGPN
Sbjct: 63  IACKLCEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGFCQEACPVDAIVEGPN 122

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FEFATETR+ELYY KE+LL NGDRWE EI RNI  D+PYR
Sbjct: 123 FEFATETREELYYSKEKLLANGDRWEREIARNIEMDAPYR 162


>gi|209964542|ref|YP_002297457.1| NADH dehydrogenase subunit I [Rhodospirillum centenum SW]
 gi|226737410|sp|B6ISX3|NUOI_RHOCS RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|209958008|gb|ACI98644.1| NADH-quinone oxidoreductase chain I [Rhodospirillum centenum SW]
          Length = 162

 Score =  187 bits (474), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 112/163 (68%), Positives = 125/163 (76%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M         LFL E V    L   Y F+ + TINYP+E+   SPRFRGEHALRRYPNGE
Sbjct: 1   MVKLDRAARGLFLAELVRGLSLTFSYMFRPRATINYPYERSPMSPRFRGEHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIE+ PR  DG+RRT RYDIDM KCIYCGLCQEACPVDAIVE
Sbjct: 61  ERCIACKLCEAVCPALAITIEAEPR-EDGSRRTTRYDIDMTKCIYCGLCQEACPVDAIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPN EFA ETR+EL+Y+KE+LL NGDRWE+ I  NI  D+PYR
Sbjct: 120 GPNLEFAAETREELFYNKEKLLANGDRWEALIAANIAADAPYR 162


>gi|195328615|ref|XP_002031010.1| GM25751 [Drosophila sechellia]
 gi|194119953|gb|EDW41996.1| GM25751 [Drosophila sechellia]
          Length = 217

 Score =  186 bits (473), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 111/161 (68%), Positives = 123/161 (76%), Gaps = 1/161 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           I     S +F  E    F + L + FK   TINYPFEKG  SPRFRGEHALRRYP+GEER
Sbjct: 58  ITDRAASTMFFGELFRGFAVTLAHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEER 117

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCEAICPAQAITIE+  R   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGP
Sbjct: 118 CIACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 176

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           NFEF+TET +EL Y+KE+LL NGD+WESEI  N+  D  YR
Sbjct: 177 NFEFSTETHEELLYNKEKLLCNGDKWESEIASNLQADHLYR 217


>gi|54261777|ref|NP_998304.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial [Danio rerio]
 gi|37194660|gb|AAH58299.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, (NADH-coenzyme Q
           reductase) [Danio rerio]
 gi|41107574|gb|AAH65459.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, (NADH-coenzyme Q
           reductase) [Danio rerio]
 gi|220678768|emb|CAX13299.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, (NADH-coenzyme Q
           reductase) [Danio rerio]
          Length = 210

 Score =  186 bits (473), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 111/162 (68%), Positives = 124/162 (76%), Gaps = 1/162 (0%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
            I       L L E +    + + Y F+   TINYPFEKG  SPRFRGEHALRRYP+GEE
Sbjct: 50  SITDRAAQTLLLTELIRGMGMAVSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSGEE 109

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLCEAICPAQAITIE+ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIVEG
Sbjct: 110 RCIACKLCEAICPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 168

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           PNFEF+TET +EL Y+KE+LLNNGD+WE+EI  NI  D  YR
Sbjct: 169 PNFEFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADFLYR 210


>gi|254460189|ref|ZP_05073605.1| NADH-ubiquinone oxidoreductase (complex i) subunit [Rhodobacterales
           bacterium HTCC2083]
 gi|206676778|gb|EDZ41265.1| NADH-ubiquinone oxidoreductase (complex i) subunit
           [Rhodobacteraceae bacterium HTCC2083]
          Length = 164

 Score =  186 bits (473), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 114/158 (72%), Positives = 129/158 (81%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
               +  L +FV  F L LRY F  K T+NYP EKG  SPRFRGEHALRRYPNGEERCIA
Sbjct: 8   RAAKYFLLADFVKGFGLGLRYMFAPKVTLNYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEA+CPAQAITI++ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE
Sbjct: 68  CKLCEAVCPAQAITIDAEPRDD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FATETR+EL+YDK++LL NGDRWE++I RN+  D+PYR
Sbjct: 127 FATETREELFYDKDKLLENGDRWEAQIARNLEIDAPYR 164


>gi|225713986|gb|ACO12839.1| NADH dehydrogenase iron-sulfur protein 8, mitochondrial precursor
           [Lepeophtheirus salmonis]
          Length = 203

 Score =  186 bits (473), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 109/159 (68%), Positives = 120/159 (75%), Gaps = 1/159 (0%)

Query: 5   RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64
                 +F  E      + L +  K   TINYPFEKG  SPRFRGEHALRRYP+GEERCI
Sbjct: 46  ERAAHHIFWTELFRGLLVTLGHMLKEPATINYPFEKGPLSPRFRGEHALRRYPSGEERCI 105

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           ACKLCEAICPAQAITIE+  R   G RRT RYDIDM KCIYCGLCQEACPVDAIVEGPNF
Sbjct: 106 ACKLCEAICPAQAITIEAEERSD-GARRTTRYDIDMTKCIYCGLCQEACPVDAIVEGPNF 164

Query: 125 EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           EF+TET +EL Y+KE+LLNNGD+WE+EI  NI  D  YR
Sbjct: 165 EFSTETHEELLYNKEKLLNNGDKWEAEIAANIEADYLYR 203


>gi|74149244|dbj|BAE22408.1| unnamed protein product [Mus musculus]
          Length = 212

 Score =  186 bits (473), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 109/159 (68%), Positives = 122/159 (76%), Gaps = 1/159 (0%)

Query: 5   RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64
                 L   E +    + L Y F+   TINYPFEKG  SPRFRGEHALRRYP+GEERCI
Sbjct: 55  DNAARILMWTELIRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSGEERCI 114

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           ACKLCEAICPAQAITIE+ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNF
Sbjct: 115 ACKLCEAICPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNF 173

Query: 125 EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           EF+TET +EL Y+KE+LLNNGD+WE++I  NI  D  YR
Sbjct: 174 EFSTETHEELLYNKEKLLNNGDKWEAKIAANIQADYLYR 212


>gi|195570536|ref|XP_002103263.1| GD20325 [Drosophila simulans]
 gi|194199190|gb|EDX12766.1| GD20325 [Drosophila simulans]
          Length = 217

 Score =  186 bits (473), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 111/161 (68%), Positives = 123/161 (76%), Gaps = 1/161 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           I     S +F  E    F + L + FK   TINYPFEKG  SPRFRGEHALRRYP+GEER
Sbjct: 58  ITDRAASTMFFGELFRGFAVTLAHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEER 117

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCEAICPAQAITIE+  R   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGP
Sbjct: 118 CIACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 176

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           NFEF+TET +EL Y+KE+LL NGD+WESEI  N+  D  YR
Sbjct: 177 NFEFSTETHEELLYNKEKLLCNGDKWESEIASNLQADHLYR 217


>gi|194901136|ref|XP_001980108.1| GG20344 [Drosophila erecta]
 gi|195501171|ref|XP_002097689.1| GE26357 [Drosophila yakuba]
 gi|190651811|gb|EDV49066.1| GG20344 [Drosophila erecta]
 gi|194183790|gb|EDW97401.1| GE26357 [Drosophila yakuba]
          Length = 217

 Score =  186 bits (472), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 111/161 (68%), Positives = 123/161 (76%), Gaps = 1/161 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           I     S +F  E    F + L + FK   TINYPFEKG  SPRFRGEHALRRYP+GEER
Sbjct: 58  ITDRAASTMFFGELFRGFAVTLAHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEER 117

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCEAICPAQAITIE+  R   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGP
Sbjct: 118 CIACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 176

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           NFEF+TET +EL Y+KE+LL NGD+WESEI  N+  D  YR
Sbjct: 177 NFEFSTETHEELLYNKEKLLCNGDKWESEIASNLQADHLYR 217


>gi|258542714|ref|YP_003188147.1| NADH dehydrogenase subunit I [Acetobacter pasteurianus IFO 3283-01]
 gi|256633792|dbj|BAH99767.1| NADH-quinone oxidoreductase chain I [Acetobacter pasteurianus IFO
           3283-01]
 gi|256636851|dbj|BAI02820.1| NADH-quinone oxidoreductase chain I [Acetobacter pasteurianus IFO
           3283-03]
 gi|256639904|dbj|BAI05866.1| NADH-quinone oxidoreductase chain I [Acetobacter pasteurianus IFO
           3283-07]
 gi|256642960|dbj|BAI08915.1| NADH-quinone oxidoreductase chain I [Acetobacter pasteurianus IFO
           3283-22]
 gi|256646015|dbj|BAI11963.1| NADH-quinone oxidoreductase chain I [Acetobacter pasteurianus IFO
           3283-26]
 gi|256649068|dbj|BAI15009.1| NADH-quinone oxidoreductase chain I [Acetobacter pasteurianus IFO
           3283-32]
 gi|256652055|dbj|BAI17989.1| NADH-quinone oxidoreductase chain I [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655112|dbj|BAI21039.1| NADH-quinone oxidoreductase chain I [Acetobacter pasteurianus IFO
           3283-12]
          Length = 162

 Score =  186 bits (472), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 109/163 (66%), Positives = 125/163 (76%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M      +    LKE VG      R  F+ K T+NYP+EKG  SPRFRGEHALRRYPNGE
Sbjct: 1   MSALGNTLRSFLLKELVGGMSSTFRMMFRPKVTLNYPYEKGPLSPRFRGEHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA CPA+AITIE+  R   G+RRT RYDIDM KCIYCGLC+EACPVDAIVE
Sbjct: 61  ERCIACKLCEATCPAEAITIEAEERDD-GSRRTTRYDIDMTKCIYCGLCEEACPVDAIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPN+EFATETR+EL YDK++LL NGDRWE+ + R +  D+PYR
Sbjct: 120 GPNYEFATETREELMYDKDKLLANGDRWEALLARRLELDAPYR 162


>gi|302803981|ref|XP_002983743.1| hypothetical protein SELMODRAFT_422906 [Selaginella moellendorffii]
 gi|302817680|ref|XP_002990515.1| hypothetical protein SELMODRAFT_428992 [Selaginella moellendorffii]
 gi|300141683|gb|EFJ08392.1| hypothetical protein SELMODRAFT_428992 [Selaginella moellendorffii]
 gi|300148580|gb|EFJ15239.1| hypothetical protein SELMODRAFT_422906 [Selaginella moellendorffii]
          Length = 215

 Score =  186 bits (472), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 116/162 (71%), Positives = 128/162 (79%), Gaps = 1/162 (0%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
           ++       +FL E V    L L+YFF+ K TINYPFEKG  SPRFRGEHALRRYP GEE
Sbjct: 55  QVLDKTGDTMFLAECVRGLMLTLKYFFEPKVTINYPFEKGPLSPRFRGEHALRRYPTGEE 114

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLCEA+CPAQAITIE+  R  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEG
Sbjct: 115 RCIACKLCEAVCPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 173

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           PNFEFATET +EL YDKE+LL NGDRWE+EI  N+  DS YR
Sbjct: 174 PNFEFATETHEELLYDKEKLLENGDRWETEIAENLRADSLYR 215


>gi|17987433|ref|NP_540067.1| NADH dehydrogenase subunit I [Brucella melitensis bv. 1 str. 16M]
 gi|256044489|ref|ZP_05447393.1| NADH dehydrogenase subunit I [Brucella melitensis bv. 1 str. Rev.1]
 gi|260563843|ref|ZP_05834329.1| NADH-quinone oxidoreductase subunit I [Brucella melitensis bv. 1
           str. 16M]
 gi|265990913|ref|ZP_06103470.1| NADH-quinone oxidoreductase subunit I [Brucella melitensis bv. 1
           str. Rev.1]
 gi|81851731|sp|Q8YGK8|NUOI_BRUME RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|17983125|gb|AAL52331.1| NADH-quinone oxidoreductase chain i [Brucella melitensis bv. 1 str.
           16M]
 gi|260153859|gb|EEW88951.1| NADH-quinone oxidoreductase subunit I [Brucella melitensis bv. 1
           str. 16M]
 gi|263001697|gb|EEZ14272.1| NADH-quinone oxidoreductase subunit I [Brucella melitensis bv. 1
           str. Rev.1]
          Length = 163

 Score =  186 bits (472), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 125/163 (76%), Positives = 134/163 (82%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M         L LKEF  AF L +R FF  K T+NYP EKG  SPRFRGEHALRRYPNGE
Sbjct: 1   MASIAQAAKSLLLKEFASAFALSMRQFFAPKATLNYPHEKGPVSPRFRGEHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVE
Sbjct: 61  ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 120

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEFATETR+ELYYDK++LL NGD WE EI RNI  D+PYR
Sbjct: 121 GPNFEFATETREELYYDKDKLLANGDHWEREIARNIAMDAPYR 163


>gi|115751579|ref|XP_792622.2| PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S protein
           8, 23kDa (NADH-coenzyme Q reductase), partial
           [Strongylocentrotus purpuratus]
 gi|115932140|ref|XP_001191284.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S protein
           8, 23kDa (NADH-coenzyme Q reductase), partial
           [Strongylocentrotus purpuratus]
          Length = 195

 Score =  186 bits (471), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 112/161 (69%), Positives = 124/161 (77%), Gaps = 1/161 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           I     S LF  E      + L Y F+   TINYPFEKG  SPRFRGEHALRRYP+GEER
Sbjct: 36  ITDRAASTLFFTELTRGLAMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSGEER 95

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCEA+CPAQAITIE+ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGP
Sbjct: 96  CIACKLCEAVCPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 154

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           NFEF+TET +EL Y+KE+LLNNGD+WE+EI  NI  D  YR
Sbjct: 155 NFEFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADHLYR 195


>gi|92117735|ref|YP_577464.1| NADH dehydrogenase subunit I [Nitrobacter hamburgensis X14]
 gi|123265191|sp|Q1QL93|NUOI_NITHX RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|91800629|gb|ABE63004.1| NADH dehydrogenase subunit I [Nitrobacter hamburgensis X14]
          Length = 162

 Score =  186 bits (471), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 127/162 (78%), Positives = 136/162 (83%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
                    L L EFV AFFL +RYFF+ K TINYPFEK   SPRFRGEHALRRYPNGEE
Sbjct: 1   MSINATARALLLTEFVSAFFLTMRYFFQPKATINYPFEKNPISPRFRGEHALRRYPNGEE 60

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCGLCQEACPVDAIVEG
Sbjct: 61  RCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGLCQEACPVDAIVEG 120

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           PNFEFATETR+ELYYDK +LL NGDRWE EI + I  D+PYR
Sbjct: 121 PNFEFATETREELYYDKAKLLANGDRWEREIAKAIELDAPYR 162


>gi|262277293|ref|ZP_06055086.1| NADH-quinone oxidoreductase subunit i [alpha proteobacterium
           HIMB114]
 gi|262224396|gb|EEY74855.1| NADH-quinone oxidoreductase subunit i [alpha proteobacterium
           HIMB114]
          Length = 161

 Score =  186 bits (471), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 118/163 (72%), Positives = 133/163 (81%), Gaps = 2/163 (1%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M+ F   +  +FL EFV   +L +++ FK K T+NYPFEKG  SPRFRGEHALRRYPNGE
Sbjct: 1   MK-FNRLLKTIFLSEFVKGLYLAIKFMFKPKATVNYPFEKGPISPRFRGEHALRRYPNGE 59

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA CPAQAITIES P+   G+R+T RYDIDM+KCIYCGLCQEACPVDAIV+
Sbjct: 60  ERCIACKLCEAACPAQAITIESEPKDD-GSRKTTRYDIDMVKCIYCGLCQEACPVDAIVQ 118

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEF TETR+ELYY KE+LL NGDRWESEI  NI  D PYR
Sbjct: 119 GPNFEFTTETREELYYTKEKLLENGDRWESEIANNIKLDKPYR 161


>gi|146278034|ref|YP_001168193.1| NADH dehydrogenase subunit I [Rhodobacter sphaeroides ATCC 17025]
 gi|145556275|gb|ABP70888.1| NADH-quinone oxidoreductase, chain I [Rhodobacter sphaeroides ATCC
           17025]
          Length = 167

 Score =  186 bits (471), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 113/158 (71%), Positives = 130/158 (82%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
             V +  L +F+  F L ++YFF  K T+NYP EKG  SPRFRGEHALRRYPNGEERCIA
Sbjct: 11  RAVKYFLLLDFIKGFGLGMKYFFAPKHTLNYPHEKGPLSPRFRGEHALRRYPNGEERCIA 70

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEA+CPAQAITI++ PR  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE
Sbjct: 71  CKLCEAVCPAQAITIDAEPR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 129

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           F+ ETR+EL+Y KE+LL NGDRWE+EI RN+  D+PYR
Sbjct: 130 FSVETREELFYTKEKLLQNGDRWEAEIARNLELDAPYR 167


>gi|90423913|ref|YP_532283.1| NADH dehydrogenase subunit I [Rhodopseudomonas palustris BisB18]
 gi|115502509|sp|Q215H2|NUOI1_RHOPB RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName:
           Full=NADH dehydrogenase I subunit I 1; AltName:
           Full=NDH-1 subunit I 1
 gi|90105927|gb|ABD87964.1| NADH-quinone oxidoreductase, chain I [Rhodopseudomonas palustris
           BisB18]
          Length = 162

 Score =  186 bits (471), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 127/157 (80%), Positives = 137/157 (87%)

Query: 7   NVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIAC 66
               L L EFV AFFL +RYFFK K TINYPFEK   SPRFRGEHALRRYPNGEERCIAC
Sbjct: 6   AARSLLLTEFVSAFFLAMRYFFKPKPTINYPFEKNPISPRFRGEHALRRYPNGEERCIAC 65

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
           KLCEA+CPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCGLCQEACPVDAIVEGPNFEF
Sbjct: 66  KLCEAVCPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGLCQEACPVDAIVEGPNFEF 125

Query: 127 ATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           ATETR+ELYYDK +LL NGDRWE EI ++I  D+PYR
Sbjct: 126 ATETREELYYDKAKLLANGDRWEREIAKSIELDAPYR 162


>gi|116178838|ref|XP_001219268.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Chaetomium globosum
           CBS 148.51]
 gi|88184344|gb|EAQ91812.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Chaetomium globosum
           CBS 148.51]
          Length = 223

 Score =  186 bits (471), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 103/162 (63%), Positives = 121/162 (74%), Gaps = 1/162 (0%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
             F     +  L E     ++ +  FF+   TI YPFEKG  SPRFRGEHALRRYP+GEE
Sbjct: 63  STFDKVGKYFLLTEMFRGMYILMEQFFRPPYTIYYPFEKGPISPRFRGEHALRRYPSGEE 122

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLCEA+CPAQAITIE+  R   G+RRT RYDIDM KCIYCG CQE+CPVDAIVE 
Sbjct: 123 RCIACKLCEAVCPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQESCPVDAIVES 181

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           PN E+ATETR+EL Y+KE+LL+NGD+WE E+   I  D+PYR
Sbjct: 182 PNAEYATETREELLYNKEKLLSNGDKWEPELAAAIRADAPYR 223


>gi|331231867|ref|XP_003328596.1| NADH-ubiquinone oxidoreductase subunit [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
 gi|309307586|gb|EFP84177.1| NADH-ubiquinone oxidoreductase subunit [Puccinia graminis f. sp.
           tritici CRL 75-36-700-3]
          Length = 259

 Score =  186 bits (471), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 104/160 (65%), Positives = 115/160 (71%), Gaps = 2/160 (1%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
                   FL E     ++ L   F+   TI  PFEKG  SPRFRGEHALRRY +GEERC
Sbjct: 102 LDKAAKLFFLTEIARGMWVVLGQMFRPPYTI-IPFEKGPVSPRFRGEHALRRYASGEERC 160

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAITIES  R  DG+RRT RYDIDM KCIYCG CQEACPVDAIVE  N
Sbjct: 161 IACKLCEAICPAQAITIESETR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVESQN 219

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            E++TETR+EL Y+KE+LL NGDR ESEI  N+  D  YR
Sbjct: 220 TEYSTETREELLYNKEKLLANGDRMESEIAANLHADHVYR 259


>gi|296415821|ref|XP_002837584.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295633457|emb|CAZ81775.1| unnamed protein product [Tuber melanosporum]
          Length = 232

 Score =  185 bits (470), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 104/160 (65%), Positives = 121/160 (75%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
                    + E +   ++ L  FF+A  TI YPFEKG  SPRFRGEHALRRYP+GEERC
Sbjct: 74  LDKAGRIFLMTEMLRGMYVVLEQFFRAPYTIMYPFEKGPISPRFRGEHALRRYPSGEERC 133

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPA AITIE+  R  DG+RRT RYDIDM KCIYCG CQE+CPVDAIVE PN
Sbjct: 134 IACKLCEAICPALAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQESCPVDAIVESPN 192

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            E+ATETR+EL Y+KE+LL+NGD+WE E+   I  D+PYR
Sbjct: 193 AEYATETREELLYNKEKLLSNGDKWEPELAAVIRADAPYR 232


>gi|1171862|sp|P42028|NDUS8_BOVIN RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           8, mitochondrial; AltName: Full=Complex I-23kD;
           Short=CI-23kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 23 kDa subunit; AltName: Full=TYKY
           subunit; Flags: Precursor
 gi|163418|gb|AAA30664.1| NADH dehydrogenase (ubiquinone) [Bos taurus]
 gi|296471574|gb|DAA13689.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial precursor [Bos taurus]
          Length = 212

 Score =  185 bits (470), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 110/164 (67%), Positives = 125/164 (76%), Gaps = 2/164 (1%)

Query: 1   MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59
           M+ +       L   E +    + L Y F+   TINYPFEKG  SPRFRGEHALRRYP+G
Sbjct: 50  MKSVTDRAAQTLLWTELIRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 109

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           EERCIACKLCEA+CPAQAITIE+ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIV
Sbjct: 110 EERCIACKLCEAVCPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 168

Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           EGPNFEF+TET +EL Y+KE+LLNNGD+WE+EI  NI  D  YR
Sbjct: 169 EGPNFEFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADYLYR 212


>gi|209735168|gb|ACI68453.1| NADH dehydrogenase iron-sulfur protein 8, mitochondrial precursor
           [Salmo salar]
          Length = 210

 Score =  185 bits (470), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 113/164 (68%), Positives = 123/164 (75%), Gaps = 2/164 (1%)

Query: 1   MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59
           MR I       L   E      + + Y F+   TINYPFEKG  SPRFRGEHALRRYPNG
Sbjct: 48  MRSITDRAAQTLLWTELFRGLGMTMSYLFREPATINYPFEKGPLSPRFRGEHALRRYPNG 107

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           EERCIACKLCEA+CPAQAITIE+  R   G+RRT RYDIDM KCIYCG CQEACPVDAIV
Sbjct: 108 EERCIACKLCEAVCPAQAITIEAETRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 166

Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           EGPNFEFATET +EL Y+KE+LLNNGD+WESEI  NI  D  YR
Sbjct: 167 EGPNFEFATETHEELLYNKEKLLNNGDQWESEIAANIQADYLYR 210


>gi|288856257|ref|NP_001165784.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial [Nasonia vitripennis]
          Length = 201

 Score =  185 bits (470), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 111/158 (70%), Positives = 126/158 (79%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
             V+ +FL+E      + L +FFK   TINYPFEKG  SPRFRGEHALRRYP+GEERCIA
Sbjct: 45  RAVNTMFLQELFRGMGVALAHFFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIA 104

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEAICPAQAITIE+  R   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE
Sbjct: 105 CKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 163

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           F+TET +E+ Y+KE+LLNNGD+WESEI  N+  D  YR
Sbjct: 164 FSTETHEEMLYNKEKLLNNGDKWESEIASNLHADHLYR 201


>gi|311247108|ref|XP_003122483.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial-like isoform 2 [Sus scrofa]
 gi|311247128|ref|XP_003122489.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial-like isoform 2 [Sus scrofa]
          Length = 212

 Score =  185 bits (470), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 111/164 (67%), Positives = 125/164 (76%), Gaps = 2/164 (1%)

Query: 1   MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59
           M+ +       L   E V    + L Y F+   TINYPFEKG  SPRFRGEHALRRYP+G
Sbjct: 50  MKSVTDRAAQTLLWTELVRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 109

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           EERCIACKLCEA+CPAQAITIE+ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIV
Sbjct: 110 EERCIACKLCEAVCPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 168

Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           EGPNFEF+TET +EL Y+KE+LLNNGD+WE+EI  NI  D  YR
Sbjct: 169 EGPNFEFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADYLYR 212


>gi|148225889|ref|NP_001087331.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa
           (NADH-coenzyme Q reductase) [Xenopus laevis]
 gi|51593201|gb|AAH78569.1| MGC85457 protein [Xenopus laevis]
          Length = 207

 Score =  185 bits (469), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 109/162 (67%), Positives = 120/162 (74%), Gaps = 1/162 (0%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
            +       L   E      + L Y F+   TINYPFEKG  SPRFRGEHALRRYP+GEE
Sbjct: 47  SVTDRAAQTLLWTELFRGLGMTLSYMFREPATINYPFEKGPLSPRFRGEHALRRYPSGEE 106

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLCEA CPAQAITIE+ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIVEG
Sbjct: 107 RCIACKLCEAACPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 165

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           PNFEF+TET +EL Y+KE+LLNNGD+WE EI  NI  D  YR
Sbjct: 166 PNFEFSTETHEELLYNKEKLLNNGDKWEVEIGANIQADFLYR 207


>gi|126736053|ref|ZP_01751797.1| NADH-quinone oxidoreductase chain I [Roseobacter sp. CCS2]
 gi|126714610|gb|EBA11477.1| NADH-quinone oxidoreductase chain I [Roseobacter sp. CCS2]
          Length = 167

 Score =  185 bits (469), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 115/158 (72%), Positives = 130/158 (82%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
               +  L++F   F L ++YFF  K T+NYP EKG  SPRFRGEHALRRYPNGEERCIA
Sbjct: 11  RAAKYFLLQDFWKGFSLGMKYFFSPKATLNYPHEKGPLSPRFRGEHALRRYPNGEERCIA 70

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEA+CPAQAITI++ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE
Sbjct: 71  CKLCEAVCPAQAITIDAEPRDD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 129

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           F+TETR+ELYYDKE+LL NGDRWESEI RN+  D+PYR
Sbjct: 130 FSTETREELYYDKEKLLENGDRWESEIARNLELDAPYR 167


>gi|195108159|ref|XP_001998660.1| GI24093 [Drosophila mojavensis]
 gi|193915254|gb|EDW14121.1| GI24093 [Drosophila mojavensis]
          Length = 216

 Score =  185 bits (469), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 110/161 (68%), Positives = 123/161 (76%), Gaps = 1/161 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           I     + +F  E    F + L + FK   TINYPFEKG  SPRFRGEHALRRYP+GEER
Sbjct: 57  ITDRAATSMFFGELFRGFAVTLAHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEER 116

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCEAICPAQAITIE+  R   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGP
Sbjct: 117 CIACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 175

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           NFEF+TET +EL Y+KE+LL NGD+WESEI  N+  D  YR
Sbjct: 176 NFEFSTETHEELLYNKEKLLCNGDKWESEIASNLQADHLYR 216


>gi|91977347|ref|YP_570006.1| NADH dehydrogenase subunit I [Rhodopseudomonas palustris BisB5]
 gi|123748991|sp|Q135Y4|NUOI2_RHOPS RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName:
           Full=NADH dehydrogenase I subunit I 2; AltName:
           Full=NDH-1 subunit I 2
 gi|91683803|gb|ABE40105.1| NADH-quinone oxidoreductase, chain I [Rhodopseudomonas palustris
           BisB5]
          Length = 162

 Score =  185 bits (469), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 128/160 (80%), Positives = 137/160 (85%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
                  L L EFV AFFL +RYFF+ K TINYPFEK   SPRFRGEHALRRYPNGEERC
Sbjct: 3   INATARSLLLTEFVSAFFLAMRYFFRPKPTINYPFEKNPISPRFRGEHALRRYPNGEERC 62

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCGLCQEACPVDAIVEGPN
Sbjct: 63  IACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGLCQEACPVDAIVEGPN 122

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FEFATETR+ELYYDK RLL NGDRWE EI ++I  D+PYR
Sbjct: 123 FEFATETREELYYDKARLLANGDRWEREIAKSIELDAPYR 162


>gi|170742519|ref|YP_001771174.1| NADH dehydrogenase subunit I [Methylobacterium sp. 4-46]
 gi|226737402|sp|B0ULL2|NUOI_METS4 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|168196793|gb|ACA18740.1| NADH-quinone oxidoreductase, chain I [Methylobacterium sp. 4-46]
          Length = 162

 Score =  185 bits (469), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 125/163 (76%), Positives = 135/163 (82%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           MR        L LKEFV  F L +RY FK K TINYPFE G  SPRFRGEHALRRYPNGE
Sbjct: 1   MR-LDQVARSLLLKEFVSGFALAMRYLFKPKATINYPFEMGHRSPRFRGEHALRRYPNGE 59

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPAQAITIE+GPR +DGTRRT RYDIDM+KCIYCG+CQEACPVDAIVE
Sbjct: 60  ERCIACKLCEAVCPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGMCQEACPVDAIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEF+ ETR+EL YDK+RLL NGDRWE EI RNI  D+PYR
Sbjct: 120 GPNFEFSVETREELLYDKQRLLANGDRWEREIARNIAADAPYR 162


>gi|220924013|ref|YP_002499315.1| NADH dehydrogenase subunit I [Methylobacterium nodulans ORS 2060]
 gi|254772594|sp|B8IUV4|NUOI_METNO RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|219948620|gb|ACL59012.1| NADH-quinone oxidoreductase, chain I [Methylobacterium nodulans ORS
           2060]
          Length = 162

 Score =  185 bits (469), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 125/163 (76%), Positives = 135/163 (82%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           MR        L LKEFV  F L +RY FK K TINYPFE G  SPRFRGEHALRRYPNGE
Sbjct: 1   MR-LDQVARSLLLKEFVSGFALAMRYLFKPKATINYPFEMGHRSPRFRGEHALRRYPNGE 59

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE+GPR +DGTRRT RYDIDM+KCIYCG+CQEACPVDAIVE
Sbjct: 60  ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGMCQEACPVDAIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEF+ ETR+EL YDK++LL NGDRWE EI RNI  D+PYR
Sbjct: 120 GPNFEFSVETREELLYDKQKLLANGDRWEREIARNIAADAPYR 162


>gi|83311878|ref|YP_422142.1| NADH dehydrogenase subunit I [Magnetospirillum magneticum AMB-1]
 gi|115502533|sp|Q2W3J2|NUOI_MAGMM RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|82946719|dbj|BAE51583.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
           kD subunit [Magnetospirillum magneticum AMB-1]
          Length = 162

 Score =  185 bits (469), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 113/163 (69%), Positives = 122/163 (74%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M           L E V    L LRY FK K TINYP+EKG  S RFRGEHALRRYPNGE
Sbjct: 1   MSFLDRTARAFLLTELVQGLALTLRYMFKPKVTINYPYEKGPLSVRFRGEHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE  PR   G+RR  RYD+DM KCIYCGLCQEACPVDAIVE
Sbjct: 61  ERCIACKLCEAICPAQAITIEPEPRDD-GSRRARRYDLDMTKCIYCGLCQEACPVDAIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFE+ATETR EL Y+K +LL NGDRWE+E+   I  D+PYR
Sbjct: 120 GPNFEYATETRAELMYNKSKLLANGDRWEAELAFRIAADAPYR 162


>gi|86749700|ref|YP_486196.1| NADH dehydrogenase subunit I [Rhodopseudomonas palustris HaA2]
 gi|115502514|sp|Q2IWX5|NUOI2_RHOP2 RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName:
           Full=NADH dehydrogenase I subunit I 2; AltName:
           Full=NDH-1 subunit I 2
 gi|86572728|gb|ABD07285.1| NADH-quinone oxidoreductase, chain I [Rhodopseudomonas palustris
           HaA2]
          Length = 162

 Score =  185 bits (469), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 129/160 (80%), Positives = 137/160 (85%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
                  L L EFV AFFL +RYFFK K TINYPFEK   SPRFRGEHALRRYPNGEERC
Sbjct: 3   INATARSLLLTEFVSAFFLAMRYFFKPKPTINYPFEKNPISPRFRGEHALRRYPNGEERC 62

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCGLCQEACPVDAIVEGPN
Sbjct: 63  IACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGLCQEACPVDAIVEGPN 122

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FEFATETR+ELYYDK RLL NGDRWE EI ++I  D+PYR
Sbjct: 123 FEFATETREELYYDKARLLANGDRWEREIAKSIELDAPYR 162


>gi|209731956|gb|ACI66847.1| NADH dehydrogenase iron-sulfur protein 8, mitochondrial precursor
           [Salmo salar]
          Length = 210

 Score =  185 bits (469), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 112/164 (68%), Positives = 121/164 (73%), Gaps = 2/164 (1%)

Query: 1   MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59
           MR I       L   E        + Y  +   TINYPFEKG  SPRFRGEHALRRYPNG
Sbjct: 48  MRSITDRAAQTLLWTELFRGLGTTMSYLLREPATINYPFEKGPLSPRFRGEHALRRYPNG 107

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           EERCIACKLCEA+CPAQAITIE+  R   G+RRT RYDIDM KCIYCG CQEACPVDAIV
Sbjct: 108 EERCIACKLCEAVCPAQAITIEAETRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 166

Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           EGPNFEFATET +EL Y+KE+LLNNGD+WESEI  NI  D  YR
Sbjct: 167 EGPNFEFATETHEELLYNKEKLLNNGDQWESEIAANIQADYLYR 210


>gi|85374152|ref|YP_458214.1| NADH dehydrogenase subunit I [Erythrobacter litoralis HTCC2594]
 gi|123409621|sp|Q2NA74|NUOI_ERYLH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|84787235|gb|ABC63417.1| NADH dehydrogenase I, I subunit [Erythrobacter litoralis HTCC2594]
          Length = 162

 Score =  185 bits (469), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 115/163 (70%), Positives = 127/163 (77%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M      +    L EF+ A  L L+YFFK K TINYPFEK   SPRFRGEHALRRYPNGE
Sbjct: 1   MTTATQLLKSFTLWEFLKAHALTLKYFFKPKATINYPFEKNPLSPRFRGEHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPAQAITIES PR   G+RRT RYDIDM KCIYCG CQEACPVDAIVE
Sbjct: 61  ERCIACKLCEAVCPAQAITIESEPRDD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFE++TETR+EL YDK +LL NGD+WE  I  N+  D+PYR
Sbjct: 120 GPNFEYSTETREELLYDKAKLLANGDKWERAIAANLEADAPYR 162


>gi|312116310|ref|YP_004013906.1| NADH-quinone oxidoreductase, chain I [Rhodomicrobium vannielii ATCC
           17100]
 gi|311221439|gb|ADP72807.1| NADH-quinone oxidoreductase, chain I [Rhodomicrobium vannielii ATCC
           17100]
          Length = 163

 Score =  185 bits (469), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 120/163 (73%), Positives = 134/163 (82%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M  F  ++    L EF+ A +L ++YFF  K TINYPFEK   SPRFRGEHALRRYPNG 
Sbjct: 1   MGGFGQSLRSAVLGEFLVATWLAMKYFFGPKATINYPFEKNPLSPRFRGEHALRRYPNGM 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE+GPR +DGTRRT RYDIDM+KCIYCG CQEACPVDAIVE
Sbjct: 61  ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGFCQEACPVDAIVE 120

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEFATETR+EL YDKE+LL NGDRWE  + +NI  D+PYR
Sbjct: 121 GPNFEFATETREELLYDKEKLLANGDRWERILAKNIELDAPYR 163


>gi|27380020|ref|NP_771549.1| NADH dehydrogenase subunit I [Bradyrhizobium japonicum USDA 110]
 gi|81736780|sp|Q89KJ6|NUOI_BRAJA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|27353174|dbj|BAC50174.1| NADH ubiquinone oxidoreductase chain I [Bradyrhizobium japonicum
           USDA 110]
          Length = 168

 Score =  184 bits (468), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 125/160 (78%), Positives = 137/160 (85%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
                  L L EFV AFFL +RYFF+ K T+NYPFEKG  SPRFRGEHALRRYPNGEERC
Sbjct: 9   INATARSLLLSEFVSAFFLAMRYFFQPKPTLNYPFEKGPISPRFRGEHALRRYPNGEERC 68

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEA+CPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCGLCQEACPVDAIVEGPN
Sbjct: 69  IACKLCEAVCPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGLCQEACPVDAIVEGPN 128

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FEFATETR+EL+YDK +LL NGDRWE EI + I  D+PYR
Sbjct: 129 FEFATETREELFYDKAKLLANGDRWEREIAKAIELDAPYR 168


>gi|321460435|gb|EFX71477.1| hypothetical protein DAPPUDRAFT_93364 [Daphnia pulex]
          Length = 183

 Score =  184 bits (468), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 112/161 (69%), Positives = 125/161 (77%), Gaps = 1/161 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           I       L L E    F + L +FFK   TINYPFEKG  SPRFRGEHALRRYP+GEER
Sbjct: 24  IVDRAGDHLLLTEIFRGFGVTLAHFFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEER 83

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCEAICPAQAITIE+ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGP
Sbjct: 84  CIACKLCEAICPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 142

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           NFEF+TET +EL Y+KE+LLNNGD+WE+EI  ++  D  YR
Sbjct: 143 NFEFSTETHEELMYNKEKLLNNGDKWEAEIAASLQADHLYR 183


>gi|56697608|ref|YP_167977.1| NADH dehydrogenase subunit I [Ruegeria pomeroyi DSS-3]
 gi|81676166|sp|Q5LPS9|NUOI_SILPO RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|56679345|gb|AAV96011.1| NADH dehydrogenase I, I subunit [Ruegeria pomeroyi DSS-3]
          Length = 164

 Score =  184 bits (468), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 117/158 (74%), Positives = 131/158 (82%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
               +  L++F     L L+YFF  K TINYP EKG  SPRFRGEHALRRYPNGEERCIA
Sbjct: 8   RAAKYFLLQDFWVGMKLGLKYFFSPKATINYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEAICPAQAITI++ PR  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE
Sbjct: 68  CKLCEAICPAQAITIDAEPR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FATETR+EL+YDKE+LL+NGDRWE+EI RN+  D+PYR
Sbjct: 127 FATETREELFYDKEKLLSNGDRWEAEIARNLELDAPYR 164


>gi|311247106|ref|XP_003122482.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial-like isoform 1 [Sus scrofa]
 gi|311247126|ref|XP_003122488.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial-like isoform 1 [Sus scrofa]
          Length = 239

 Score =  184 bits (468), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 111/164 (67%), Positives = 125/164 (76%), Gaps = 2/164 (1%)

Query: 1   MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59
           M+ +       L   E V    + L Y F+   TINYPFEKG  SPRFRGEHALRRYP+G
Sbjct: 77  MKSVTDRAAQTLLWTELVRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 136

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           EERCIACKLCEA+CPAQAITIE+ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIV
Sbjct: 137 EERCIACKLCEAVCPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 195

Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           EGPNFEF+TET +EL Y+KE+LLNNGD+WE+EI  NI  D  YR
Sbjct: 196 EGPNFEFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADYLYR 239


>gi|197101747|ref|NP_001125353.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial precursor [Pongo abelii]
 gi|269969395|sp|P0CB97|NDUS8_PONAB RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           8, mitochondrial; AltName: Full=Complex I-23kD;
           Short=CI-23kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 23 kDa subunit; Flags: Precursor
 gi|55727800|emb|CAH90653.1| hypothetical protein [Pongo abelii]
          Length = 210

 Score =  184 bits (468), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 112/164 (68%), Positives = 125/164 (76%), Gaps = 2/164 (1%)

Query: 1   MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59
           M+ +       L L E      + L Y F+   TINYPFEKG  SPRFRGEHALRRYP+G
Sbjct: 48  MKSVTDRAARTLLLTELFRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 107

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           EERCIACKLCEAICPAQAITIE+ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIV
Sbjct: 108 EERCIACKLCEAICPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 166

Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           EGPNFEF+TET +EL Y+KE+LLNNGD+WE+EI  NI  D  YR
Sbjct: 167 EGPNFEFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADYLYR 210


>gi|221114662|ref|XP_002155312.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S protein
           8, partial [Hydra magnipapillata]
          Length = 175

 Score =  184 bits (468), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 112/161 (69%), Positives = 126/161 (78%), Gaps = 1/161 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           I   N + LFL + +    + L Y F+   TINYPFEKG  SPRFRGEHALRRYP+GEER
Sbjct: 16  INNRNATILFLTDLLRGLAMTLSYVFREPATINYPFEKGPLSPRFRGEHALRRYPSGEER 75

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCEAICPAQAITIE+ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGP
Sbjct: 76  CIACKLCEAICPAQAITIEAEPRPD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 134

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           NFE++TET +EL Y+KE+LL NGDRWE EI +NI  D  YR
Sbjct: 135 NFEYSTETHEELLYNKEKLLENGDRWEVEIAKNIQADYLYR 175


>gi|194745003|ref|XP_001954982.1| GF16476 [Drosophila ananassae]
 gi|190628019|gb|EDV43543.1| GF16476 [Drosophila ananassae]
          Length = 217

 Score =  184 bits (468), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 110/161 (68%), Positives = 123/161 (76%), Gaps = 1/161 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           I     + +F  E    F + L + FK   TINYPFEKG  SPRFRGEHALRRYP+GEER
Sbjct: 58  ITDRAATTMFFGELFRGFAVTLAHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEER 117

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCEAICPAQAITIE+  R   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGP
Sbjct: 118 CIACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 176

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           NFEF+TET +EL Y+KE+LL NGD+WESEI  N+  D  YR
Sbjct: 177 NFEFSTETHEELLYNKEKLLCNGDKWESEIASNLQADHLYR 217


>gi|4505371|ref|NP_002487.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial precursor [Homo sapiens]
 gi|115392037|ref|NP_001065248.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial precursor [Pan troglodytes]
 gi|2499325|sp|O00217|NDUS8_HUMAN RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           8, mitochondrial; AltName: Full=Complex I-23kD;
           Short=CI-23kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 23 kDa subunit; AltName: Full=TYKY
           subunit; Flags: Precursor
 gi|115502491|sp|Q0MQI3|NDUS8_PANTR RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           8, mitochondrial; AltName: Full=Complex I-23kD;
           Short=CI-23kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 23 kDa subunit; Flags: Precursor
 gi|269969396|sp|P0CB98|NDUS8_PONPY RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           8, mitochondrial; AltName: Full=Complex I-23kD;
           Short=CI-23kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 23 kDa subunit; Flags: Precursor
 gi|1935056|gb|AAB51776.1| mitochondrial NADH dehydrogenase-ubiquinone Fe-S protein 8, 23 kDa
           subunit precursor [Homo sapiens]
 gi|3523123|gb|AAC34273.1| NADH dehydrogenase-ubiquinone Fe-S protein 8 23 kDa subunit [Homo
           sapiens]
 gi|110645822|gb|AAI19755.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa
           (NADH-coenzyme Q reductase) [Homo sapiens]
 gi|111661817|gb|ABH12160.1| mitochondrial complex I subunit NDUFS8 [Pan troglodytes]
 gi|111661821|gb|ABH12162.1| mitochondrial complex I subunit NDUFS8 [Pongo pygmaeus]
 gi|119595093|gb|EAW74687.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa
           (NADH-coenzyme Q reductase), isoform CRA_c [Homo
           sapiens]
 gi|189069467|dbj|BAG37133.1| unnamed protein product [Homo sapiens]
          Length = 210

 Score =  184 bits (468), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 111/164 (67%), Positives = 124/164 (75%), Gaps = 2/164 (1%)

Query: 1   MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59
           M+ +       L   E      + L Y F+   TINYPFEKG  SPRFRGEHALRRYP+G
Sbjct: 48  MKSVTDRAARTLLWTELFRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 107

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           EERCIACKLCEAICPAQAITIE+ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIV
Sbjct: 108 EERCIACKLCEAICPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 166

Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           EGPNFEF+TET +EL Y+KE+LLNNGD+WE+EI  NI  D  YR
Sbjct: 167 EGPNFEFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADYLYR 210


>gi|126727165|ref|ZP_01743002.1| NADH dehydrogenase subunit I [Rhodobacterales bacterium HTCC2150]
 gi|126703593|gb|EBA02689.1| NADH dehydrogenase subunit I [Rhodobacterales bacterium HTCC2150]
          Length = 163

 Score =  184 bits (468), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 116/160 (72%), Positives = 133/160 (83%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           F  +V +  L + +  F L ++YFF+ K T+NYP EKG  SPRFRGEHALRRY NGEERC
Sbjct: 5   FTRSVKYFLLMDIIKGFGLGMKYFFRPKATLNYPHEKGPLSPRFRGEHALRRYANGEERC 64

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAITI++ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPN
Sbjct: 65  IACKLCEAICPAQAITIDAEPRDD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 123

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FEFATETR+EL+YDK +LL+NGDRWESEI RN+ TD+PYR
Sbjct: 124 FEFATETREELFYDKAKLLDNGDRWESEIARNLETDAPYR 163


>gi|87196499|ref|NP_777243.2| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial precursor [Bos taurus]
 gi|81674803|gb|AAI09907.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa
           (NADH-coenzyme Q reductase) [Bos taurus]
          Length = 212

 Score =  184 bits (468), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 109/164 (66%), Positives = 124/164 (75%), Gaps = 2/164 (1%)

Query: 1   MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59
           M+ +       L   E +    + L Y F+   TINYPFEKG  SPRFRGEHALRRYP+G
Sbjct: 50  MKSVTDRAAQTLLWTELIRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 109

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           EERCIACKLCEA+CPAQAI IE+ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIV
Sbjct: 110 EERCIACKLCEAVCPAQAIIIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 168

Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           EGPNFEF+TET +EL Y+KE+LLNNGD+WE+EI  NI  D  YR
Sbjct: 169 EGPNFEFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADYLYR 212


>gi|255264062|ref|ZP_05343404.1| NADH-quinone oxidoreductase, i subunit [Thalassiobium sp. R2A62]
 gi|255106397|gb|EET49071.1| NADH-quinone oxidoreductase, i subunit [Thalassiobium sp. R2A62]
          Length = 164

 Score =  184 bits (467), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 112/158 (70%), Positives = 128/158 (81%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
               +    +F+  F L  +YFF  K T+NYP EKG  SPRFRGEHALRRYPNGEERCIA
Sbjct: 8   RAAKYFLFADFIKGFGLGFKYFFSPKATLNYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEA+CPAQAITI++ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE
Sbjct: 68  CKLCEAVCPAQAITIDAEPRDD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           F+TETR+ELYYDK++LL NGDRWE+EI RN+  D+PYR
Sbjct: 127 FSTETREELYYDKDKLLENGDRWEAEIARNLEMDAPYR 164


>gi|195395498|ref|XP_002056373.1| GJ10912 [Drosophila virilis]
 gi|194143082|gb|EDW59485.1| GJ10912 [Drosophila virilis]
          Length = 217

 Score =  184 bits (467), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 110/161 (68%), Positives = 123/161 (76%), Gaps = 1/161 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           I     + +F  E    F + L + FK   TINYPFEKG  SPRFRGEHALRRYP+GEER
Sbjct: 58  ITDRAATTMFFGELFRGFAVTLAHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEER 117

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCEAICPAQAITIE+  R   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGP
Sbjct: 118 CIACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 176

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           NFEF+TET +EL Y+KE+LL NGD+WESEI  N+  D  YR
Sbjct: 177 NFEFSTETHEELLYNKEKLLCNGDKWESEIASNLQADHLYR 217


>gi|23013091|ref|ZP_00053036.1| COG1143: Formate hydrogenlyase subunit 6/NADH:ubiquinone
           oxidoreductase 23 kD subunit (chain I) [Magnetospirillum
           magnetotacticum MS-1]
          Length = 162

 Score =  184 bits (467), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 113/163 (69%), Positives = 123/163 (75%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M           L E V    L LRY FK+K TINYP+EKG  S RFRGEHALRRYPNGE
Sbjct: 1   MSFLDRTARAFLLTELVQGLALTLRYMFKSKVTINYPYEKGPLSVRFRGEHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE  PR   G+RR  RYD+DM KCIYCGLCQEACPVDAIVE
Sbjct: 61  ERCIACKLCEAICPAQAITIEPEPRPD-GSRRARRYDLDMTKCIYCGLCQEACPVDAIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFE+ATETR EL Y+K +LL NGDRWE+E+   I  D+PYR
Sbjct: 120 GPNFEYATETRAELMYNKSKLLANGDRWEAELAFRIAADAPYR 162


>gi|301771866|ref|XP_002921339.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial-like isoform 1 [Ailuropoda melanoleuca]
 gi|301771868|ref|XP_002921340.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial-like isoform 2 [Ailuropoda melanoleuca]
          Length = 210

 Score =  184 bits (467), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 110/164 (67%), Positives = 125/164 (76%), Gaps = 2/164 (1%)

Query: 1   MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59
           M+ +       L   E V    + L Y F+   TINYPFEKG  SPRFRGEHALRRYP+G
Sbjct: 48  MKSVTDRAAQTLLWTELVRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 107

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           EERCIACKLCEA+CPAQAITIE+ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIV
Sbjct: 108 EERCIACKLCEAVCPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 166

Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           EGPNFEF+TET +EL Y+KE+LL+NGD+WE+EI  NI  D  YR
Sbjct: 167 EGPNFEFSTETHEELLYNKEKLLSNGDKWEAEIAANIQADFLYR 210


>gi|296218966|ref|XP_002755672.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial-like [Callithrix jacchus]
          Length = 210

 Score =  184 bits (467), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 112/164 (68%), Positives = 124/164 (75%), Gaps = 2/164 (1%)

Query: 1   MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59
           MR +       L   E      + L Y F+   TINYPFEKG  SPRFRGEHALRRYP+G
Sbjct: 48  MRSVTDRAAQTLLWTELFRGLAMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 107

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           EERCIACKLCEAICPAQAITIE+ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIV
Sbjct: 108 EERCIACKLCEAICPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 166

Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           EGPNFEF+TET +EL Y+KE+LLNNGD+WE+EI  NI  D  YR
Sbjct: 167 EGPNFEFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADYLYR 210


>gi|298291838|ref|YP_003693777.1| NADH-quinone oxidoreductase, chain I [Starkeya novella DSM 506]
 gi|296928349|gb|ADH89158.1| NADH-quinone oxidoreductase, chain I [Starkeya novella DSM 506]
          Length = 162

 Score =  184 bits (467), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 129/163 (79%), Positives = 138/163 (84%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           MR        L L EFV AFFL +RYFFK K T+NYPFEKG  SPRFRGEHALRRYPNGE
Sbjct: 1   MR-LDLAARQLLLTEFVSAFFLAMRYFFKPKATLNYPFEKGPVSPRFRGEHALRRYPNGE 59

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE+GPR +DGTRRT RYDIDM+KCIYCG CQEACPVDAIVE
Sbjct: 60  ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGFCQEACPVDAIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEFATETR+ELYYDK +LL NGDRWE EI RN+  D+PYR
Sbjct: 120 GPNFEFATETREELYYDKAKLLANGDRWEREIARNMALDAPYR 162


>gi|171680662|ref|XP_001905276.1| hypothetical protein [Podospora anserina S mat+]
 gi|170939958|emb|CAP65184.1| unnamed protein product [Podospora anserina S mat+]
          Length = 220

 Score =  184 bits (467), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 103/162 (63%), Positives = 122/162 (75%), Gaps = 1/162 (0%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
             F     +  + E +   ++ +  FF+   TI YPFEKG  SPRFRGEHALRRYP+GEE
Sbjct: 60  STFDKLGKYFLMTEMMRGMYVLMEQFFRPPYTIYYPFEKGPISPRFRGEHALRRYPSGEE 119

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLCEA+CPAQAITIE+  R   G+RRT RYDIDM KCIYCG CQE+CPVDAIVE 
Sbjct: 120 RCIACKLCEAVCPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQESCPVDAIVES 178

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           PN E+ATETR+EL Y+KE+LL+NGD+WE E+   I  DSPYR
Sbjct: 179 PNAEYATETREELLYNKEKLLSNGDKWEPELAAAIRADSPYR 220


>gi|302889235|ref|XP_003043503.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256724420|gb|EEU37790.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 211

 Score =  184 bits (467), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 103/162 (63%), Positives = 120/162 (74%), Gaps = 1/162 (0%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
                   F  + E     ++ L  FF+   TI YPFEKG  SPRFRGEHALRRYP+GEE
Sbjct: 51  STLDRVGKFFLMTEMARGMYVLLEQFFRPPYTIYYPFEKGPISPRFRGEHALRRYPSGEE 110

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLCEAICPAQAITIE+  R   G+RRT +YDIDM KCIYCG CQE+CPVDAIVE 
Sbjct: 111 RCIACKLCEAICPAQAITIEAEERAD-GSRRTTKYDIDMTKCIYCGFCQESCPVDAIVES 169

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           PN E+ATETR+EL Y+KE+LL+NGD+WE E+   I  D+PYR
Sbjct: 170 PNAEYATETREELLYNKEKLLSNGDKWEPELAAAIRADAPYR 211


>gi|329114686|ref|ZP_08243445.1| NADH-quinone oxidoreductase subunit I [Acetobacter pomorum DM001]
 gi|326696166|gb|EGE47848.1| NADH-quinone oxidoreductase subunit I [Acetobacter pomorum DM001]
          Length = 162

 Score =  184 bits (466), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 109/163 (66%), Positives = 124/163 (76%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M      +    LKE VG      R  F+ K T+NYP+EKG  SPRFRGEHALRRYPNGE
Sbjct: 1   MGALGNTLRSFLLKELVGGMSSTFRMMFRPKVTLNYPYEKGPLSPRFRGEHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA CPA+AITIE+  R   G+RRT RYDIDM KCIYCGLC+EACPVDAIVE
Sbjct: 61  ERCIACKLCEATCPAEAITIEAEERDD-GSRRTTRYDIDMTKCIYCGLCEEACPVDAIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPN+EFATETR+EL YDK +LL NGDRWE+ + R +  D+PYR
Sbjct: 120 GPNYEFATETREELMYDKNKLLANGDRWEALLARRLELDAPYR 162


>gi|62897789|dbj|BAD96834.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa
           (NADH-coenzyme Q reductase) variant [Homo sapiens]
          Length = 210

 Score =  184 bits (466), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 110/162 (67%), Positives = 122/162 (75%), Gaps = 1/162 (0%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
            +       L   E      + L Y F+   TINYPFEKG  SPRFRGEHALRRYP+GEE
Sbjct: 50  SVTDRAARTLLWTELFRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSGEE 109

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLCEAICPAQAITIE+ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIVEG
Sbjct: 110 RCIACKLCEAICPAQAITIEAEPRTD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 168

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           PNFEF+TET +EL Y+KE+LLNNGD+WE+EI  NI  D  YR
Sbjct: 169 PNFEFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADYLYR 210


>gi|319405690|emb|CBI79313.1| NADH dehydrogenase I chain I [Bartonella sp. AR 15-3]
          Length = 163

 Score =  184 bits (466), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 125/163 (76%), Positives = 135/163 (82%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M         L L EF+ AFFL +R FF  K TINYP EKG  S RFRGEHALRRYPNGE
Sbjct: 1   MSSLIQAAKSLLLLEFISAFFLAMRQFFSPKPTINYPHEKGFVSARFRGEHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE+ PR +DGTRR +RYDIDM+KCIYCG CQEACPVDAIVE
Sbjct: 61  ERCIACKLCEAICPAQAITIEASPRRNDGTRRAIRYDIDMVKCIYCGFCQEACPVDAIVE 120

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEFATETR+ELYY+KE+LLNNGDRWE EI RNI+ DSPYR
Sbjct: 121 GPNFEFATETREELYYNKEKLLNNGDRWEREIARNILIDSPYR 163


>gi|324516961|gb|ADY46687.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8 [Ascaris
           suum]
          Length = 207

 Score =  184 bits (466), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 108/163 (66%), Positives = 124/163 (76%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M      +  LF  E    F + + +FF   +TINYPFEKG  SPRFRGEHALRRYP+GE
Sbjct: 46  MGDINSGLHKLFFTELFRGFGVMMAHFFMEPSTINYPFEKGPLSPRFRGEHALRRYPSGE 105

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE+  R   G+RRT RYDIDM KCI+CGLCQEACPVDAIVE
Sbjct: 106 ERCIACKLCEAICPAQAITIEAEERPD-GSRRTTRYDIDMTKCIFCGLCQEACPVDAIVE 164

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEF+TET +EL Y+KE+LL NGDRWE E+  N+  +  YR
Sbjct: 165 GPNFEFSTETHEELIYNKEKLLLNGDRWEPELAANLQAEYLYR 207


>gi|195454170|ref|XP_002074119.1| GK14477 [Drosophila willistoni]
 gi|194170204|gb|EDW85105.1| GK14477 [Drosophila willistoni]
          Length = 217

 Score =  184 bits (466), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 110/161 (68%), Positives = 123/161 (76%), Gaps = 1/161 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           I     + +F  E    F + L + FK   TINYPFEKG  SPRFRGEHALRRYP+GEER
Sbjct: 58  ITDRAATTMFFGELFRGFGVTLAHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEER 117

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCEAICPAQAITIE+  R   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGP
Sbjct: 118 CIACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 176

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           NFEF+TET +EL Y+KE+LL NGD+WESEI  N+  D  YR
Sbjct: 177 NFEFSTETHEELLYNKEKLLCNGDKWESEIASNLQADHLYR 217


>gi|144900794|emb|CAM77658.1| NADH-quinone oxidoreductase, chain I [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 162

 Score =  184 bits (466), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 110/163 (67%), Positives = 120/163 (73%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M           L E V    L  RY FK   T NYP+EK   SPRFRGEHALRRY NGE
Sbjct: 1   MAFLDRTARAFLLTELVQGLALTFRYMFKPSVTTNYPYEKIPMSPRFRGEHALRRYANGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE+ PR   G+RR  RYD+DM KCIYCGLCQEACPVDAIVE
Sbjct: 61  ERCIACKLCEAICPAQAITIEAEPRPD-GSRRARRYDLDMTKCIYCGLCQEACPVDAIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEFATETR EL Y+K++LL NGDRWE+E+   I  D+PYR
Sbjct: 120 GPNFEFATETRAELMYNKQKLLANGDRWEAELAMRIAADAPYR 162


>gi|302694183|ref|XP_003036770.1| hypothetical protein SCHCODRAFT_72253 [Schizophyllum commune H4-8]
 gi|300110467|gb|EFJ01868.1| hypothetical protein SCHCODRAFT_72253 [Schizophyllum commune H4-8]
          Length = 236

 Score =  184 bits (466), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 105/160 (65%), Positives = 122/160 (76%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
               V   F+ E +   ++ L  FF+   TI YPFEKG  SPRFRGEHALRRYP+GEERC
Sbjct: 78  LNKAVHMFFISEIMRGMWIVLEQFFRPPYTIMYPFEKGPLSPRFRGEHALRRYPSGEERC 137

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAITIES  R   G+R+T +YDIDMIKCIYCG CQEACPVDAIVE  N
Sbjct: 138 IACKLCEAICPAQAITIESEARAD-GSRKTTKYDIDMIKCIYCGFCQEACPVDAIVETQN 196

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            EFATETR+EL Y+KE+LL+NGDR E+EI  N+ ++  YR
Sbjct: 197 QEFATETREELLYNKEKLLSNGDRMEAEIAANLHSEHVYR 236


>gi|254294094|ref|YP_003060117.1| NADH dehydrogenase subunit I [Hirschia baltica ATCC 49814]
 gi|254042625|gb|ACT59420.1| NADH-quinone oxidoreductase, chain I [Hirschia baltica ATCC 49814]
          Length = 162

 Score =  184 bits (466), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 113/163 (69%), Positives = 128/163 (78%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M      +    L + V A  L LRY F  K T+NYPFEKG  SPRFRGEHALRRY NGE
Sbjct: 1   MSRISQAIKGAMLSDIVSALGLALRYMFTRKATVNYPFEKGPLSPRFRGEHALRRYANGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPAQAITIE+ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIVE
Sbjct: 61  ERCIACKLCEAVCPAQAITIEAEPRSD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEF+TETR+EL+YDK+RLL+NGDRWE +I +N+  D+ YR
Sbjct: 120 GPNFEFSTETREELFYDKDRLLSNGDRWERQIAKNLELDARYR 162


>gi|146341105|ref|YP_001206153.1| NADH dehydrogenase subunit I [Bradyrhizobium sp. ORS278]
 gi|156632703|sp|A4YVK2|NUOI_BRASO RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|146193911|emb|CAL77928.1| NADH-quinone oxidoreductase chain I (NADH dehydrogenase I, chain I)
           (NDH-1, chain I) [Bradyrhizobium sp. ORS278]
          Length = 162

 Score =  184 bits (466), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 127/157 (80%), Positives = 138/157 (87%)

Query: 7   NVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIAC 66
               L L+EFV AFFL +RYFFK K T+NYPFEKG  SPRFRGEHALRRYPNGEERCIAC
Sbjct: 6   TARSLLLQEFVSAFFLAMRYFFKPKPTLNYPFEKGPISPRFRGEHALRRYPNGEERCIAC 65

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
           KLCEA+CPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCGLCQEACPVDAIVEGPNFEF
Sbjct: 66  KLCEAVCPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGLCQEACPVDAIVEGPNFEF 125

Query: 127 ATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           ATETR+ELYYDK +LL NGDRWE EI + I  D+PYR
Sbjct: 126 ATETREELYYDKAKLLANGDRWEREISKAIALDAPYR 162


>gi|254780861|ref|YP_003065274.1| NADH dehydrogenase subunit I [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040538|gb|ACT57334.1| NADH dehydrogenase subunit I [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 163

 Score =  184 bits (466), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 163/163 (100%), Positives = 163/163 (100%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE
Sbjct: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE
Sbjct: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR
Sbjct: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163


>gi|182889618|gb|AAI65418.1| Zgc:109991 protein [Danio rerio]
          Length = 210

 Score =  184 bits (466), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 111/162 (68%), Positives = 120/162 (74%), Gaps = 1/162 (0%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
            I       L L E      + L Y F+   TINYPFEKG  SPRFRGEHALRRYPNGEE
Sbjct: 50  SITDRAAQTLLLTELCRGLAMALSYLFREPATINYPFEKGPLSPRFRGEHALRRYPNGEE 109

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLCEA+CPAQAITIE+  R   G RRT RYDIDM KCIYCG CQEACPVDAIVEG
Sbjct: 110 RCIACKLCEAVCPAQAITIEAETRAD-GNRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 168

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           PNFE++TET +EL Y+KE+LLNNGDRWE EI  NI  D  YR
Sbjct: 169 PNFEYSTETHEELLYNKEKLLNNGDRWEVEIAANIQADYLYR 210


>gi|312372009|gb|EFR20062.1| hypothetical protein AND_20740 [Anopheles darlingi]
          Length = 216

 Score =  184 bits (466), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 110/161 (68%), Positives = 121/161 (75%), Gaps = 1/161 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           I       +F  E      + L + FK   TINYPFEKG  SPRFRGEHALRRYP+GEER
Sbjct: 57  ITDRAAQTIFWTELFRGAAVTLAHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEER 116

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCEAICPAQAITIE+  R   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGP
Sbjct: 117 CIACKLCEAICPAQAITIEAEERSD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 175

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           NFEF+TET +EL Y+KE+LL NGD+WESEI  NI  D  YR
Sbjct: 176 NFEFSTETHEELLYNKEKLLTNGDKWESEIASNINADYLYR 216


>gi|66773136|ref|NP_001019573.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8b [Danio rerio]
 gi|66267262|gb|AAH95111.1| Zgc:109991 [Danio rerio]
          Length = 210

 Score =  184 bits (466), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 111/162 (68%), Positives = 121/162 (74%), Gaps = 1/162 (0%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
            I       L L E      + L Y F+   TINYPFEKG  SPRFRGEHALRRYPNGEE
Sbjct: 50  SITDRAAQTLLLTELCRGLAMALSYLFREPATINYPFEKGPLSPRFRGEHALRRYPNGEE 109

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLCEA+CPAQAITIE+  R   G+RRT RYDIDM KCIYCG CQEACPVDAIVEG
Sbjct: 110 RCIACKLCEAVCPAQAITIEAETRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 168

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           PNFE++TET +EL Y+KE+LLNNGDRWE EI  NI  D  YR
Sbjct: 169 PNFEYSTETHEELLYNKEKLLNNGDRWEVEIAANIQADYLYR 210


>gi|320165166|gb|EFW42065.1| mitochondrial NADH:ubiquinone oxidoreductase complex I [Capsaspora
           owczarzaki ATCC 30864]
          Length = 230

 Score =  183 bits (465), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 108/162 (66%), Positives = 127/162 (78%), Gaps = 1/162 (0%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
           +I   N S LF  E  G   L L YFF+ K T++YPFEKG  SPRFRGEHALRRYP+GEE
Sbjct: 70  QIVDNNASTLFFSELFGGMRLTLDYFFRPKATLHYPFEKGPLSPRFRGEHALRRYPSGEE 129

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLCEAICPA AITIE+ PR   G+RRT RYDID+ KCIYCG CQEACPVDAIVEG
Sbjct: 130 RCIACKLCEAICPAMAITIEAEPRAD-GSRRTTRYDIDLTKCIYCGFCQEACPVDAIVEG 188

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           PNFE+ATET +EL  +K++LL+NGD+WE E+  N+ ++  YR
Sbjct: 189 PNFEYATETHEELLANKDKLLSNGDKWEPELAANLQSEYLYR 230


>gi|148255905|ref|YP_001240490.1| NADH dehydrogenase subunit I [Bradyrhizobium sp. BTAi1]
 gi|156632578|sp|A5EK90|NUOI_BRASB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|146408078|gb|ABQ36584.1| NADH dehydrogenase subunit I [Bradyrhizobium sp. BTAi1]
          Length = 162

 Score =  183 bits (465), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 126/157 (80%), Positives = 137/157 (87%)

Query: 7   NVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIAC 66
               L L EFV AFFL +RYFF+ K T+NYPFEKG  SPRFRGEHALRRYPNGEERCIAC
Sbjct: 6   TARSLLLSEFVSAFFLAMRYFFQPKPTLNYPFEKGPISPRFRGEHALRRYPNGEERCIAC 65

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
           KLCEA+CPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCGLCQEACPVDAIVEGPNFEF
Sbjct: 66  KLCEAVCPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGLCQEACPVDAIVEGPNFEF 125

Query: 127 ATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           ATETR+ELYYDK +LL NGDRWE EI + I  D+PYR
Sbjct: 126 ATETREELYYDKAKLLANGDRWEREISKAIALDAPYR 162


>gi|99080595|ref|YP_612749.1| NADH dehydrogenase subunit I [Ruegeria sp. TM1040]
 gi|115502544|sp|Q1GIM9|NUOI_SILST RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|99036875|gb|ABF63487.1| NADH-quinone oxidoreductase chain I [Ruegeria sp. TM1040]
          Length = 164

 Score =  183 bits (465), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 114/158 (72%), Positives = 130/158 (82%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
               +  L++    F L L+YFF  K TINYP EKG  SPRFRGEHALRRYPNGEERCIA
Sbjct: 8   RAAKYFLLQDVWQGFKLGLKYFFAPKATINYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEA+CPAQAITI++ PR  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE
Sbjct: 68  CKLCEAVCPAQAITIDAEPR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FATETR+EL+YDK++LL NG+RWE+EI RN+  D+PYR
Sbjct: 127 FATETREELFYDKDKLLANGERWEAEIARNLELDAPYR 164


>gi|163868365|ref|YP_001609574.1| NADH dehydrogenase subunit I [Bartonella tribocorum CIP 105476]
 gi|240850591|ref|YP_002971991.1| NADH dehydrogenase I subunit I [Bartonella grahamii as4aup]
 gi|189030923|sp|A9IUN3|NUOI_BART1 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|161018021|emb|CAK01579.1| NADH dehydrogenase I chain I [Bartonella tribocorum CIP 105476]
 gi|240267714|gb|ACS51302.1| NADH dehydrogenase I subunit I [Bartonella grahamii as4aup]
          Length = 163

 Score =  183 bits (465), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 128/163 (78%), Positives = 138/163 (84%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M  F      L L EFV AFFL +R FF  K TINYP+EKG  S RFRGEHALRRYPNGE
Sbjct: 1   MSGFIQAAKSLLLLEFVSAFFLAMRQFFSPKPTINYPYEKGFVSQRFRGEHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPV+AIVE
Sbjct: 61  ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVEAIVE 120

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEFATETR+ELYYDKE+LL NGDRWE EI RNI+ D+PYR
Sbjct: 121 GPNFEFATETREELYYDKEKLLMNGDRWEREIARNILMDAPYR 163


>gi|115502490|sp|Q0MQI2|NDUS8_GORGO RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein
           8, mitochondrial; AltName: Full=Complex I-23kD;
           Short=CI-23kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 23 kDa subunit; Flags: Precursor
 gi|111661819|gb|ABH12161.1| mitochondrial complex I subunit NDUFS8 [Gorilla gorilla]
          Length = 210

 Score =  183 bits (465), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 111/164 (67%), Positives = 124/164 (75%), Gaps = 2/164 (1%)

Query: 1   MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59
           M+ +       L   E      + L Y F+   TINYPFEKG  SPRFRGEHALRRYP+G
Sbjct: 48  MKSVTDRAARTLLWTELFRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 107

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           EERCIACKLCEAICPAQAITIE+ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIV
Sbjct: 108 EERCIACKLCEAICPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 166

Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           EGPNFEF+TET +EL Y+KE+LLNNGD+WE+EI  NI  D  YR
Sbjct: 167 EGPNFEFSTETHEELLYNKEKLLNNGDKWEAEITANIQADYLYR 210


>gi|85076501|ref|XP_955936.1| NADH:ubiquinone oxidoreductase 21.3c kD subunit [Neurospora crassa
           OR74A]
 gi|3929361|sp|Q12644|NDUS8_NEUCR RecName: Full=NADH-ubiquinone oxidoreductase 23 kDa subunit,
           mitochondrial; AltName: Full=Complex I-23kD;
           Short=CI-23kD; Flags: Precursor
 gi|1246816|emb|CAA64794.1| ferredoxin-like iron-sulfur subunit of mitochondrial complex I
           [Neurospora crassa]
 gi|28916969|gb|EAA26700.1| NADH:ubiquinone oxidoreductase 21.3c kD subunit [Neurospora crassa
           OR74A]
          Length = 219

 Score =  183 bits (465), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 104/161 (64%), Positives = 122/161 (75%), Gaps = 1/161 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           +   N  +  L E     ++ +  FF+   TI YPFEKG  SPRFRGEHALRRYP+GEER
Sbjct: 60  VLDKNGRYFLLTEMFRGMYVAMEQFFRPPYTIYYPFEKGPISPRFRGEHALRRYPSGEER 119

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCEA+CPAQAITIE+  R   G+RRT RYDIDM KCIYCG CQE+CPVDAIVE P
Sbjct: 120 CIACKLCEAVCPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQESCPVDAIVESP 178

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           N E+ATETR+EL Y+KE+LL+NGD+WE E+   I  DSPYR
Sbjct: 179 NAEYATETREELLYNKEKLLSNGDKWEPELAAAIRADSPYR 219


>gi|39936007|ref|NP_948283.1| NADH dehydrogenase subunit I [Rhodopseudomonas palustris CGA009]
 gi|192291662|ref|YP_001992267.1| NADH dehydrogenase subunit I [Rhodopseudomonas palustris TIE-1]
 gi|81562357|sp|Q6N5N2|NUOI1_RHOPA RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName:
           Full=NADH dehydrogenase I subunit I 1; AltName:
           Full=NDH-1 subunit I 1
 gi|39649861|emb|CAE28383.1| NADH-ubiquinone dehydrogenase chain I [Rhodopseudomonas palustris
           CGA009]
 gi|192285411|gb|ACF01792.1| NADH-quinone oxidoreductase, chain I [Rhodopseudomonas palustris
           TIE-1]
          Length = 162

 Score =  183 bits (465), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 127/157 (80%), Positives = 135/157 (85%)

Query: 7   NVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIAC 66
               L L EFV AFFL +RYFFK K TINYPFEK   SPRFRGEHALRRYPNGEERCIAC
Sbjct: 6   TARSLLLTEFVSAFFLAMRYFFKPKPTINYPFEKNPISPRFRGEHALRRYPNGEERCIAC 65

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
           KLCEA+CPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVEGPNFEF
Sbjct: 66  KLCEAVCPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVEGPNFEF 125

Query: 127 ATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           ATETR+ELYYDK RLL NGDRWE EI + I  D+PYR
Sbjct: 126 ATETREELYYDKARLLANGDRWEREIAKAISLDAPYR 162


>gi|254475969|ref|ZP_05089355.1| NADH dehydrogenase i, i subunit [Ruegeria sp. R11]
 gi|214030212|gb|EEB71047.1| NADH dehydrogenase i, i subunit [Ruegeria sp. R11]
          Length = 164

 Score =  183 bits (465), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 114/158 (72%), Positives = 131/158 (82%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
               +  L++F     L L+YFF  K T+NYP EKG  SPRFRGEHALRRYPNGEERCIA
Sbjct: 8   RAAKYFLLQDFWAGMKLGLKYFFAPKATVNYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEA+CPAQAITI++ PR  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE
Sbjct: 68  CKLCEAVCPAQAITIDAEPR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FATETR+EL+YDKE+LL+NG+RWE+EI RN+  D+PYR
Sbjct: 127 FATETREELFYDKEKLLSNGERWEAEIARNLELDAPYR 164


>gi|195037807|ref|XP_001990352.1| GH18285 [Drosophila grimshawi]
 gi|193894548|gb|EDV93414.1| GH18285 [Drosophila grimshawi]
          Length = 217

 Score =  183 bits (465), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 110/161 (68%), Positives = 123/161 (76%), Gaps = 1/161 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           I     + +F  E    F + L + FK   TINYPFEKG  SPRFRGEHALRRYP+GEER
Sbjct: 58  ITDRAATTMFFGELFRGFAVTLAHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEER 117

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCEAICPAQAITIE+  R   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGP
Sbjct: 118 CIACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 176

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           NFEF+TET +EL Y+KE+LL NGD+WESEI  N+  D  YR
Sbjct: 177 NFEFSTETHEELLYNKEKLLCNGDKWESEIASNLQADHLYR 217


>gi|55742238|ref|NP_001006930.1| NADH dehydrogenase ubiquinone Fe-S 8 [Xenopus (Silurana)
           tropicalis]
 gi|50416643|gb|AAH77660.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa
           (NADH-coenzyme Q reductase) [Xenopus (Silurana)
           tropicalis]
 gi|89271932|emb|CAJ82191.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa
           (NADH-coenzyme Q reductase) [Xenopus (Silurana)
           tropicalis]
          Length = 209

 Score =  183 bits (465), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 109/162 (67%), Positives = 121/162 (74%), Gaps = 1/162 (0%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
            +       L   E      + L Y F+   TINYPFEKG  SPRFRGEHALRRYP+GEE
Sbjct: 49  SVTDRAAQTLLWTELFRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSGEE 108

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLCEA+CPAQAITIE+ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIVEG
Sbjct: 109 RCIACKLCEAVCPAQAITIEAEPRTD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 167

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           PNFEF+TET +EL Y+KE+LLNNGD+WE EI  NI  D  YR
Sbjct: 168 PNFEFSTETHEELLYNKEKLLNNGDKWEVEIGANIQADFLYR 209


>gi|254439108|ref|ZP_05052602.1| NADH-quinone oxidoreductase, chain I subfamily [Octadecabacter
           antarcticus 307]
 gi|198254554|gb|EDY78868.1| NADH-quinone oxidoreductase, chain I subfamily [Octadecabacter
           antarcticus 307]
          Length = 168

 Score =  183 bits (464), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 113/160 (70%), Positives = 130/160 (81%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           +     +  L +F   F L  +YFF  K T+NYP EKG  SPRFRGEHALRRYPNGEERC
Sbjct: 10  YNRAAKYFLLADFAKGFRLGFKYFFAPKVTLNYPHEKGPLSPRFRGEHALRRYPNGEERC 69

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEA+CPAQAITI++ PR   G+RRT RYDIDM KCIYCG C+EACPVDAIVEGPN
Sbjct: 70  IACKLCEAVCPAQAITIDAEPRDD-GSRRTTRYDIDMTKCIYCGFCEEACPVDAIVEGPN 128

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FEF+TETR+ELYYDKE+LL+NGDRWE+EI RN+  D+PYR
Sbjct: 129 FEFSTETREELYYDKEKLLDNGDRWEAEIARNLEMDAPYR 168


>gi|46204691|ref|ZP_00049610.2| COG1143: Formate hydrogenlyase subunit 6/NADH:ubiquinone
           oxidoreductase 23 kD subunit (chain I) [Magnetospirillum
           magnetotacticum MS-1]
          Length = 196

 Score =  183 bits (464), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 125/163 (76%), Positives = 136/163 (83%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M+        L LKEFV  FFL ++YFFK K TINYPFE G   PRFRGEHALRRYPNGE
Sbjct: 1   MK-LDQVARSLLLKEFVSGFFLAMKYFFKPKATINYPFEMGHRGPRFRGEHALRRYPNGE 59

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE+GPR +DGTRRT RYDIDM+KCIYCG+CQEACPVDAIVE
Sbjct: 60  ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGMCQEACPVDAIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEF+ ETR+EL YDKE+LL NGDRWE EI RNI  D+PYR
Sbjct: 120 GPNFEFSVETREELLYDKEKLLANGDRWEREIARNIALDAPYR 162


>gi|289620443|emb|CBI53016.1| unnamed protein product [Sordaria macrospora]
          Length = 221

 Score =  183 bits (464), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 103/160 (64%), Positives = 121/160 (75%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
              N  +  L E     ++ +  FF+   TI YPFEKG  SPRFRGEHALRRYP+GEERC
Sbjct: 63  LDKNGRYFLLTEMFRGMYVAMEQFFRPPYTIYYPFEKGPISPRFRGEHALRRYPSGEERC 122

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEA+CPAQAITIE+  R   G+RRT RYDIDM KCIYCG CQE+CPVDAIVE PN
Sbjct: 123 IACKLCEAVCPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQESCPVDAIVESPN 181

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            E+ATETR+EL Y+KE+LL+NGD+WE E+   I  D+PYR
Sbjct: 182 AEYATETREELLYNKEKLLSNGDKWEPELAAAIRADAPYR 221


>gi|89070163|ref|ZP_01157492.1| NADH dehydrogenase subunit I [Oceanicola granulosus HTCC2516]
 gi|89044280|gb|EAR50426.1| NADH dehydrogenase subunit I [Oceanicola granulosus HTCC2516]
          Length = 164

 Score =  183 bits (464), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 115/158 (72%), Positives = 130/158 (82%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
               +  L++F   F L  +YFFK K T+NYP EKG  SPRFRGEHALRRYPNGEERCIA
Sbjct: 8   RAAKYFLLQDFFQGFKLGFKYFFKPKATVNYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEAICPAQAITI++ PR  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE
Sbjct: 68  CKLCEAICPAQAITIDAEPR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           F+TETR+ELYYDK +LL NG+RWE+EI RN+  D+PYR
Sbjct: 127 FSTETREELYYDKAKLLENGERWEAEIARNLEIDAPYR 164


>gi|87200306|ref|YP_497563.1| NADH dehydrogenase subunit I [Novosphingobium aromaticivorans DSM
           12444]
 gi|115502536|sp|Q2G5Z4|NUOI_NOVAD RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|87135987|gb|ABD26729.1| NADH dehydrogenase subunit I [Novosphingobium aromaticivorans DSM
           12444]
          Length = 161

 Score =  183 bits (464), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 115/158 (72%), Positives = 129/158 (81%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
             +    L EFV A +L L+YFFK K TINYPFEK   SPRFRGEHALRRYPNGEERCIA
Sbjct: 5   QLIKSFTLWEFVKAHWLTLKYFFKPKATINYPFEKNPLSPRFRGEHALRRYPNGEERCIA 64

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEA+CPAQAITIE+ PR  DG+RRT RYDIDM KCI+CG CQEACPVDAIVEGPNFE
Sbjct: 65  CKLCEAVCPAQAITIEAEPR-EDGSRRTTRYDIDMTKCIFCGFCQEACPVDAIVEGPNFE 123

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           +ATETR+EL YDK +LL+NGD+WE  I  N+  D+PYR
Sbjct: 124 YATETREELLYDKAKLLSNGDKWERAIAANLEADAPYR 161


>gi|86137588|ref|ZP_01056165.1| NADH dehydrogenase I, I subunit [Roseobacter sp. MED193]
 gi|85825923|gb|EAQ46121.1| NADH dehydrogenase I, I subunit [Roseobacter sp. MED193]
          Length = 165

 Score =  183 bits (464), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 115/158 (72%), Positives = 131/158 (82%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
               +  L++F   F L L+YFF  K TINYP EKG  SPRFRGEHALRRYPNGEERCIA
Sbjct: 9   RAAKYFLLQDFWVGFKLGLKYFFAPKATINYPHEKGPLSPRFRGEHALRRYPNGEERCIA 68

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEA+CPAQAITI++ PR  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE
Sbjct: 69  CKLCEAVCPAQAITIDAEPR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 127

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FATETR+EL+YDK++LL NG+RWE+EI RN+  D+PYR
Sbjct: 128 FATETREELFYDKDKLLANGERWEAEIARNLEIDAPYR 165


>gi|316933901|ref|YP_004108883.1| NADH-quinone oxidoreductase subunit I [Rhodopseudomonas palustris
           DX-1]
 gi|315601615|gb|ADU44150.1| NADH-quinone oxidoreductase, chain I [Rhodopseudomonas palustris
           DX-1]
          Length = 162

 Score =  183 bits (464), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 128/157 (81%), Positives = 135/157 (85%)

Query: 7   NVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIAC 66
               L L EFV AFFL +RYFFK K TINYPFEK   SPRFRGEHALRRYPNGEERCIAC
Sbjct: 6   AARSLLLTEFVSAFFLAMRYFFKPKPTINYPFEKNPISPRFRGEHALRRYPNGEERCIAC 65

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
           KLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVEGPNFEF
Sbjct: 66  KLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVEGPNFEF 125

Query: 127 ATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           ATETR+ELYYDK RLL NGDRWE EI + I  D+PYR
Sbjct: 126 ATETREELYYDKARLLANGDRWEREIAKAISLDAPYR 162


>gi|158301718|ref|XP_321378.4| AGAP001711-PA [Anopheles gambiae str. PEST]
 gi|157012608|gb|EAA00878.4| AGAP001711-PA [Anopheles gambiae str. PEST]
          Length = 214

 Score =  183 bits (464), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 110/161 (68%), Positives = 122/161 (75%), Gaps = 1/161 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           I       +F  E      + L + FK   TINYPFEKG  SPRFRGEHALRRYP+GEER
Sbjct: 55  ITDRAAQTIFWTELFRGAAVTLAHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEER 114

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCEAICPAQAITIE+  R   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGP
Sbjct: 115 CIACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 173

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           NFEF+TET +EL Y+KE+LL+NGD+WESEI  NI  D  YR
Sbjct: 174 NFEFSTETHEELLYNKEKLLSNGDKWESEIATNINADYLYR 214


>gi|118090950|ref|XP_001232780.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) [Gallus
           gallus]
          Length = 209

 Score =  183 bits (464), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 111/164 (67%), Positives = 123/164 (75%), Gaps = 2/164 (1%)

Query: 1   MRIF-RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59
           M+         L   E      + L Y F+   TINYPFEKG  SPRFRGEHALRRYP+G
Sbjct: 47  MKSITDRAAQTLLWTELFRGLAMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 106

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           EERCIACKLCEAICPAQAITIE+ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIV
Sbjct: 107 EERCIACKLCEAICPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 165

Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           EGPNFEF+TET +EL Y+KE+LLNNGD+WE+EI  NI  D  YR
Sbjct: 166 EGPNFEFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADYLYR 209


>gi|83951754|ref|ZP_00960486.1| NADH dehydrogenase I, I subunit [Roseovarius nubinhibens ISM]
 gi|83836760|gb|EAP76057.1| NADH dehydrogenase I, I subunit [Roseovarius nubinhibens ISM]
          Length = 164

 Score =  183 bits (464), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 119/158 (75%), Positives = 132/158 (83%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
               +  L +FV  F L L+YFF  KTT+NYP EKG  SPRFRGEHALRRYPNGEERCIA
Sbjct: 8   RAAGYFLLSDFVKGFKLGLKYFFAPKTTLNYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEAICPAQAITI++ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE
Sbjct: 68  CKLCEAICPAQAITIDAEPRDD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FATETR+EL+YDKERLL+NGDRWE+EI RN+  D+PYR
Sbjct: 127 FATETREELFYDKERLLDNGDRWEAEIARNLEMDAPYR 164


>gi|77463081|ref|YP_352585.1| NADH dehydrogenase subunit I [Rhodobacter sphaeroides 2.4.1]
 gi|126461953|ref|YP_001043067.1| NADH dehydrogenase subunit I [Rhodobacter sphaeroides ATCC 17029]
 gi|221638937|ref|YP_002525199.1| NADH dehydrogenase subunit I [Rhodobacter sphaeroides KD131]
 gi|332557954|ref|ZP_08412276.1| NADH dehydrogenase subunit I [Rhodobacter sphaeroides WS8N]
 gi|115502510|sp|Q3J3F0|NUOI1_RHOS4 RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName:
           Full=NADH dehydrogenase I subunit I 1; AltName:
           Full=NDH-1 subunit I 1
 gi|156632691|sp|A3PIX9|NUOI1_RHOS1 RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName:
           Full=NADH dehydrogenase I subunit I 1; AltName:
           Full=NDH-1 subunit I 1
 gi|77387499|gb|ABA78684.1| Subunit of NADH-ubiquinone oxidoreductase (Complex I) that contains
           2 Fe-S centers [Rhodobacter sphaeroides 2.4.1]
 gi|126103617|gb|ABN76295.1| NADH-quinone oxidoreductase, chain I [Rhodobacter sphaeroides ATCC
           17029]
 gi|221159718|gb|ACM00698.1| NADH-quinone oxidoreductase subunit I 1 [Rhodobacter sphaeroides
           KD131]
 gi|332275666|gb|EGJ20981.1| NADH dehydrogenase subunit I [Rhodobacter sphaeroides WS8N]
          Length = 167

 Score =  183 bits (464), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 112/158 (70%), Positives = 130/158 (82%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
               +  L +F+  F L ++YFF  K T+NYP EKG  SPRFRGEHALRRYPNGEERCIA
Sbjct: 11  RAAKYFLLLDFIKGFGLGMKYFFAPKHTVNYPHEKGPLSPRFRGEHALRRYPNGEERCIA 70

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEA+CPAQAITI++ PR  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE
Sbjct: 71  CKLCEAVCPAQAITIDAEPR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 129

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           F+TETR+EL+Y+K+RLL NG RWE+EI RN+  D+PYR
Sbjct: 130 FSTETREELFYNKDRLLENGARWEAEIARNLELDAPYR 167


>gi|115524538|ref|YP_781449.1| NADH dehydrogenase subunit I [Rhodopseudomonas palustris BisA53]
 gi|122296203|sp|Q07NL5|NUOI2_RHOP5 RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName:
           Full=NADH dehydrogenase I subunit I 2; AltName:
           Full=NDH-1 subunit I 2
 gi|115518485|gb|ABJ06469.1| NADH-quinone oxidoreductase, chain I [Rhodopseudomonas palustris
           BisA53]
          Length = 162

 Score =  182 bits (463), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 125/157 (79%), Positives = 137/157 (87%)

Query: 7   NVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIAC 66
               L L EFV AFFL +RYFFK K T+NYPFEKG  SPRFRGEHALRRYPNGEERCIAC
Sbjct: 6   AARSLLLTEFVSAFFLAMRYFFKPKPTLNYPFEKGPISPRFRGEHALRRYPNGEERCIAC 65

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
           KLCEA+CPAQAITIE+GPR +DGTRRT RYDIDM+KCIYCGLCQEACPVDAIVEGPNFEF
Sbjct: 66  KLCEAVCPAQAITIEAGPRRNDGTRRTERYDIDMVKCIYCGLCQEACPVDAIVEGPNFEF 125

Query: 127 ATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           ATETR+ELYYDK +LL NGDRWE EI +++  D+PYR
Sbjct: 126 ATETREELYYDKAKLLANGDRWEREIAKHMALDAPYR 162


>gi|49474185|ref|YP_032227.1| NADH dehydrogenase subunit I [Bartonella quintana str. Toulouse]
 gi|81696041|sp|Q6FZY3|NUOI_BARQU RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|49239689|emb|CAF26064.1| NADH dehydrogenase I, I subunit [Bartonella quintana str. Toulouse]
          Length = 163

 Score =  182 bits (463), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 126/163 (77%), Positives = 136/163 (83%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M         L L EFV AFFL +R FF  K TINYP+EKG  S RFRGEHALRRYPNGE
Sbjct: 1   MSGLIQAAKSLLLLEFVSAFFLAMRQFFSPKPTINYPYEKGVVSQRFRGEHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPV+AIVE
Sbjct: 61  ERCIACKLCEAICPAQAITIEAGPRGNDGTRRTVRYDIDMVKCIYCGFCQEACPVEAIVE 120

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEFATE R+ELYYDKE+LL NGDRWE EI RNI+ D+PYR
Sbjct: 121 GPNFEFATEMREELYYDKEKLLMNGDRWEREIARNILIDAPYR 163


>gi|284434569|gb|ADB85312.1| putative NADH-ubiquinone [Phyllostachys edulis]
          Length = 221

 Score =  182 bits (463), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 116/161 (72%), Positives = 130/161 (80%), Gaps = 3/161 (1%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           +F  +++ LFL E V    L L+YFF+ K  INYPFEKG  SPRFRGEHALRRY  GEER
Sbjct: 64  VFERSINTLFLTEMVRGLMLTLKYFFERK--INYPFEKGPLSPRFRGEHALRRYETGEER 121

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCEAICPAQAITIE+  R  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGP
Sbjct: 122 CIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 180

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           NFEFATET +EL YDKE+LL NGDRWE+EI  N+ ++S YR
Sbjct: 181 NFEFATETHEELLYDKEKLLENGDRWETEIAANLKSESLYR 221


>gi|149914591|ref|ZP_01903121.1| NADH dehydrogenase subunit I [Roseobacter sp. AzwK-3b]
 gi|149811384|gb|EDM71219.1| NADH dehydrogenase subunit I [Roseobacter sp. AzwK-3b]
          Length = 164

 Score =  182 bits (463), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 116/158 (73%), Positives = 131/158 (82%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
               +  LK+F+  F L L+YFF  K T+NYP EKG  SPRFRGEHALRRYPNGEERCIA
Sbjct: 8   RAAGYFLLKDFLVGFRLGLKYFFAPKATLNYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEAICPAQAITI++ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE
Sbjct: 68  CKLCEAICPAQAITIDAEPRDD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FATETR+EL+YDK++LL NGDRWE+EI RN+  D+PYR
Sbjct: 127 FATETREELFYDKQKLLENGDRWEAEIARNLELDAPYR 164


>gi|260434168|ref|ZP_05788139.1| NADH-quinone oxidoreductase subunit i [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417996|gb|EEX11255.1| NADH-quinone oxidoreductase subunit i [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 164

 Score =  182 bits (463), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 115/158 (72%), Positives = 131/158 (82%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
               +  L++F   F L ++YFF  K T+NYP EKG  SPRFRGEHALRRYPNGEERCIA
Sbjct: 8   RAAKYFLLQDFWQGFKLGMKYFFAPKATVNYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEAICPAQAITI++ PR  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE
Sbjct: 68  CKLCEAICPAQAITIDAEPR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FATETR+EL+YDK++LL NGDRWE+EI RN+  D+PYR
Sbjct: 127 FATETREELFYDKQKLLENGDRWEAEIARNLELDAPYR 164


>gi|170068344|ref|XP_001868829.1| NADH dehydrogenase iron-sulfur protein 8, mitochondrial [Culex
           quinquefasciatus]
 gi|167864397|gb|EDS27780.1| NADH dehydrogenase iron-sulfur protein 8, mitochondrial [Culex
           quinquefasciatus]
          Length = 213

 Score =  182 bits (463), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 110/161 (68%), Positives = 122/161 (75%), Gaps = 1/161 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           I       +F  E      + L + FK   TINYPFEKG  SPRFRGEHALRRYP+GEER
Sbjct: 54  ITDRAAQTIFWTELFRGAAVTLAHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEER 113

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCEAICPAQAITIE+  R   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGP
Sbjct: 114 CIACKLCEAICPAQAITIEAEERTD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 172

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           NFEF+TET +EL Y+KE+LL+NGD+WESEI  NI  D  YR
Sbjct: 173 NFEFSTETHEELLYNKEKLLSNGDKWESEIASNINADYLYR 213


>gi|73982759|ref|XP_864136.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase 23 kDa
           subunit, mitochondrial precursor (Complex I-23KD)
           (CI-23KD) (TYKY subunit) isoform 2 [Canis familiaris]
          Length = 206

 Score =  182 bits (463), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 107/160 (66%), Positives = 123/160 (76%), Gaps = 2/160 (1%)

Query: 1   MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59
           M+ +       L   E +    + L Y F+   TINYPFEKG  SPRFRGEHALRRYP+G
Sbjct: 48  MKSVTDRAAQTLLWTELIRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 107

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           EERCIACKLCEA+CPAQAITIE+ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIV
Sbjct: 108 EERCIACKLCEAVCPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 166

Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
           EGPNFEF+TET +EL Y+KE+LL+NGD+WE+EI  NI  D
Sbjct: 167 EGPNFEFSTETHEELLYNKEKLLSNGDKWEAEIAANIQAD 206


>gi|114765005|ref|ZP_01444152.1| NADH dehydrogenase subunit I [Pelagibaca bermudensis HTCC2601]
 gi|114542552|gb|EAU45577.1| NADH dehydrogenase subunit I [Roseovarius sp. HTCC2601]
          Length = 164

 Score =  182 bits (463), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 113/158 (71%), Positives = 130/158 (82%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
               +  L +F+  F L L+YFF  K T+NYP EKG  SPRFRGEHALRRYPNGEERCIA
Sbjct: 8   RAAKYFLLTDFIKGFALGLKYFFAPKPTLNYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEAICPAQAITI++ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE
Sbjct: 68  CKLCEAICPAQAITIDAEPRDD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FAT+TR+EL+YDK++LL NG+RWE+EI RN+  D+PYR
Sbjct: 127 FATDTREELFYDKQKLLENGERWEAEIARNLELDAPYR 164


>gi|326428756|gb|EGD74326.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Salpingoeca sp. ATCC
           50818]
          Length = 209

 Score =  182 bits (463), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 108/161 (67%), Positives = 125/161 (77%), Gaps = 1/161 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           +       LFL E +    + L Y+F+   TI YPFEKG  SPRFRGEHALRRYP+GEER
Sbjct: 50  VMESASKTLFLTEVLRGMGMTLSYYFRKPATIYYPFEKGPLSPRFRGEHALRRYPSGEER 109

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCEAICPAQAITIE+ PR  DG+RRT RYDIDM KCI+CG CQEACPVDAIVEGP
Sbjct: 110 CIACKLCEAICPAQAITIETVPR-EDGSRRTTRYDIDMTKCIFCGFCQEACPVDAIVEGP 168

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           NFE++TET QEL Y+K++LL NGD+WE EI +NI  +  YR
Sbjct: 169 NFEYSTETHQELLYNKDKLLANGDKWEVEIQKNIEAEHLYR 209


>gi|73982757|ref|XP_851642.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase 23 kDa
           subunit, mitochondrial precursor (Complex I-23KD)
           (CI-23KD) (TYKY subunit) isoform 1 [Canis familiaris]
          Length = 216

 Score =  182 bits (463), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 107/160 (66%), Positives = 123/160 (76%), Gaps = 2/160 (1%)

Query: 1   MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59
           M+ +       L   E +    + L Y F+   TINYPFEKG  SPRFRGEHALRRYP+G
Sbjct: 58  MKSVTDRAAQTLLWTELIRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 117

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           EERCIACKLCEA+CPAQAITIE+ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIV
Sbjct: 118 EERCIACKLCEAVCPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 176

Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
           EGPNFEF+TET +EL Y+KE+LL+NGD+WE+EI  NI  D
Sbjct: 177 EGPNFEFSTETHEELLYNKEKLLSNGDKWEAEIAANIQAD 216


>gi|156379274|ref|XP_001631383.1| predicted protein [Nematostella vectensis]
 gi|156218422|gb|EDO39320.1| predicted protein [Nematostella vectensis]
          Length = 182

 Score =  182 bits (463), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 111/159 (69%), Positives = 123/159 (77%), Gaps = 1/159 (0%)

Query: 5   RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64
             N + LF  E +    + L   F+   TINYPFEKG  SPRFRGEHALRRYP+GEERCI
Sbjct: 25  DRNATTLFFGELLRGLAMTLSKLFQEPATINYPFEKGPLSPRFRGEHALRRYPSGEERCI 84

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           ACKLCEAICPAQAITIE+  R   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNF
Sbjct: 85  ACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNF 143

Query: 125 EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           EFATET +EL Y+KE+LLNNGDRWE+EI  N+  D  YR
Sbjct: 144 EFATETHEELLYNKEKLLNNGDRWEAEIAANLQADFLYR 182


>gi|296283848|ref|ZP_06861846.1| NADH dehydrogenase subunit I [Citromicrobium bathyomarinum JL354]
          Length = 161

 Score =  182 bits (463), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 113/162 (69%), Positives = 125/162 (77%), Gaps = 1/162 (0%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
                 +    L EFV A  L L+Y FK K TINYP+EK   SPRFRGEHALRRYPNGEE
Sbjct: 1   MSIAQTIKAFTLYEFVKAHALTLKYLFKPKVTINYPYEKNPISPRFRGEHALRRYPNGEE 60

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLCEA+CPAQAITIES PR   G+RRT RYDIDM KCIYCG CQEACPVDAIVEG
Sbjct: 61  RCIACKLCEAVCPAQAITIESEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 119

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           PNFE++TETR+EL YDK +LL NGD+WE  I  N+  D+PYR
Sbjct: 120 PNFEYSTETREELLYDKAKLLANGDKWERAIAANLEADAPYR 161


>gi|319898890|ref|YP_004158983.1| NADH dehydrogenase I chain I [Bartonella clarridgeiae 73]
 gi|319402854|emb|CBI76405.1| NADH dehydrogenase I chain I [Bartonella clarridgeiae 73]
          Length = 163

 Score =  182 bits (463), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 127/163 (77%), Positives = 137/163 (84%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M         L L EFV AFFL +R FF  K TINYP+EKG  S RFRGEHALRRYPNGE
Sbjct: 1   MSSLIQAAKSLLLLEFVSAFFLAMRQFFAPKPTINYPYEKGFVSARFRGEHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE+GPR +DGTRRT+RYDIDM+KCIYCG CQEACPVDAIVE
Sbjct: 61  ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTIRYDIDMVKCIYCGFCQEACPVDAIVE 120

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEFATE R+ELYYDKE+LLNNGDRWE EI RNI+ D+PYR
Sbjct: 121 GPNFEFATEMREELYYDKEKLLNNGDRWEREIARNILIDAPYR 163


>gi|258576549|ref|XP_002542456.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Uncinocarpus reesii
           1704]
 gi|237902722|gb|EEP77123.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Uncinocarpus reesii
           1704]
          Length = 232

 Score =  182 bits (462), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 104/162 (64%), Positives = 119/162 (73%), Gaps = 1/162 (0%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
                   F  + E     ++ L  FF+   TI YPFEKG  SPRFRGEHALRRYP+GEE
Sbjct: 72  STLDKAGKFFLMTELFRGMYVVLEQFFRPPYTIYYPFEKGPISPRFRGEHALRRYPSGEE 131

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLCEAICPAQAITIE+  R  DG+RRT RYDIDM KCIYCG CQE+CPVDAIVE 
Sbjct: 132 RCIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQESCPVDAIVES 190

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           PN E+ATETR+EL Y+KE+LL NGD+WE E+      D+PYR
Sbjct: 191 PNAEYATETREELLYNKEKLLANGDKWEPELAAVARADAPYR 232


>gi|326919862|ref|XP_003206196.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial-like [Meleagris gallopavo]
          Length = 209

 Score =  182 bits (462), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 112/164 (68%), Positives = 124/164 (75%), Gaps = 2/164 (1%)

Query: 1   MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59
           M+ I       L   E      + L Y F+   TINYPFEKG  SPRFRGEHALRRYP+G
Sbjct: 47  MKSITDRAAQTLLWTELFRGLAMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 106

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           EERCIACKLCEAICPAQAITIE+ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIV
Sbjct: 107 EERCIACKLCEAICPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 165

Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           EGPNFEF+TET +EL Y+KE+LLNNGD+WE+EI  NI  D  YR
Sbjct: 166 EGPNFEFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADYLYR 209


>gi|145616212|ref|XP_360940.2| hypothetical protein MGG_03483 [Magnaporthe oryzae 70-15]
 gi|145009964|gb|EDJ94620.1| hypothetical protein MGG_03483 [Magnaporthe oryzae 70-15]
          Length = 229

 Score =  182 bits (462), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 104/155 (67%), Positives = 120/155 (77%), Gaps = 1/155 (0%)

Query: 9   SFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKL 68
            +  L E     ++ L  FF+   TI YPFEKG  SPRFRGEHALRRYP+GEERCIACKL
Sbjct: 76  KYFLLSEMGRGMYVLLEQFFRPPYTIFYPFEKGPISPRFRGEHALRRYPSGEERCIACKL 135

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
           CEA+CPAQAITIE+  R   G+RRT RYDIDM KCIYCG CQE+CPVDAIVE PN E+AT
Sbjct: 136 CEAVCPAQAITIEAEERMD-GSRRTTRYDIDMTKCIYCGFCQESCPVDAIVESPNAEYAT 194

Query: 129 ETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           ETR+EL Y+KE+LL+NGD+WE E+   I  DSPYR
Sbjct: 195 ETREELLYNKEKLLSNGDKWEPELAATIRADSPYR 229


>gi|310791703|gb|EFQ27230.1| NADH-quinone oxidoreductase [Glomerella graminicola M1.001]
          Length = 226

 Score =  182 bits (462), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 103/162 (63%), Positives = 120/162 (74%), Gaps = 1/162 (0%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
                   +  L E     ++ +  FF+   TI YPFEKG  SPRFRGEHALRRYP+GEE
Sbjct: 66  STLNKLGRYFLLSEMARGMYVLMEQFFRPPYTIYYPFEKGPISPRFRGEHALRRYPSGEE 125

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLCEAICPAQAITIE+  R   G+RRT RYDIDM KCIYCG CQE+CPVDAIVE 
Sbjct: 126 RCIACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQESCPVDAIVES 184

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           PN E+ATETR+EL Y+KE+LL+NGD+WE E+   I  D+PYR
Sbjct: 185 PNAEYATETREELLYNKEKLLSNGDKWEPELAAVIRADAPYR 226


>gi|163850509|ref|YP_001638552.1| NADH dehydrogenase subunit I [Methylobacterium extorquens PA1]
 gi|218529206|ref|YP_002420022.1| NADH dehydrogenase subunit I [Methylobacterium chloromethanicum
           CM4]
 gi|240137574|ref|YP_002962045.1| NADH-quinone oxidoreductase subunit I (NADH dehydrogenase I subunit
           I) [Methylobacterium extorquens AM1]
 gi|254560045|ref|YP_003067140.1| NADH-quinone oxidoreductase subunit I [Methylobacterium extorquens
           DM4]
 gi|226737399|sp|A9W1M5|NUOI_METEP RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|254772593|sp|B7KQ58|NUOI_METC4 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|163662114|gb|ABY29481.1| NADH-quinone oxidoreductase, chain I [Methylobacterium extorquens
           PA1]
 gi|218521509|gb|ACK82094.1| NADH-quinone oxidoreductase, chain I [Methylobacterium
           chloromethanicum CM4]
 gi|240007542|gb|ACS38768.1| NADH-quinone oxidoreductase subunit I (NADH dehydrogenase I subunit
           I) [Methylobacterium extorquens AM1]
 gi|254267323|emb|CAX23155.1| NADH-quinone oxidoreductase subunit I (NADH dehydrogenase I subunit
           I) [Methylobacterium extorquens DM4]
          Length = 162

 Score =  182 bits (462), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 123/163 (75%), Positives = 135/163 (82%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M+        L LKEFV  F L ++YFFK K TINYPFE G   PRFRGEHALRRYPNGE
Sbjct: 1   MK-LDQVARSLLLKEFVSGFVLAMKYFFKPKATINYPFEMGHRGPRFRGEHALRRYPNGE 59

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE+GPR +DGTRRT RYDIDM+KCIYCG+CQEACPVDAIVE
Sbjct: 60  ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGMCQEACPVDAIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEF+ ETR+EL YDK++LL NGDRWE EI RNI  D+PYR
Sbjct: 120 GPNFEFSVETREELLYDKQKLLENGDRWEREIARNIAVDAPYR 162


>gi|259419188|ref|ZP_05743105.1| NADH-quinone oxidoreductase, i subunit [Silicibacter sp. TrichCH4B]
 gi|259345410|gb|EEW57264.1| NADH-quinone oxidoreductase, i subunit [Silicibacter sp. TrichCH4B]
          Length = 164

 Score =  182 bits (462), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 114/158 (72%), Positives = 130/158 (82%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
               +  L++    F L L+YFF  K T+NYP EKG  SPRFRGEHALRRYPNGEERCIA
Sbjct: 8   RAAKYFLLQDVWQGFKLGLKYFFAPKATLNYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEAICPAQAITI++ PR  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE
Sbjct: 68  CKLCEAICPAQAITIDAEPR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FATETR+EL+YDK++LL NG+RWE+EI RN+  D+PYR
Sbjct: 127 FATETREELFYDKDKLLANGERWEAEIARNLELDAPYR 164


>gi|149184627|ref|ZP_01862945.1| NADH dehydrogenase subunit I [Erythrobacter sp. SD-21]
 gi|148831947|gb|EDL50380.1| NADH dehydrogenase subunit I [Erythrobacter sp. SD-21]
          Length = 161

 Score =  182 bits (462), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 116/156 (74%), Positives = 127/156 (81%), Gaps = 1/156 (0%)

Query: 8   VSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACK 67
           +    L EFV A  L L+YFFK K TINYPFEK   SPRFRGEHALRRYPNGEERCIACK
Sbjct: 7   IKSFTLWEFVKAHALTLKYFFKPKVTINYPFEKNPLSPRFRGEHALRRYPNGEERCIACK 66

Query: 68  LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           LCEA+CPAQAITIES PR  DG+RRT RYDIDM KCIYCG CQEACPVDA+VEGPNFE+A
Sbjct: 67  LCEAVCPAQAITIESEPR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAVVEGPNFEYA 125

Query: 128 TETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           TETR+EL YDK +LL NGD+WE  I  N+  D+PYR
Sbjct: 126 TETREELLYDKAKLLANGDKWERAIAANLEADAPYR 161


>gi|58261400|ref|XP_568110.1| hypothetical protein [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|134115557|ref|XP_773492.1| hypothetical protein CNBI1060 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50256118|gb|EAL18845.1| hypothetical protein CNBI1060 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57230192|gb|AAW46593.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 273

 Score =  182 bits (462), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 106/157 (67%), Positives = 118/157 (75%), Gaps = 1/157 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
                  LFL E V   ++ L  FF+   TI YPFEKG  S RFRGEHALRRYPNGEERC
Sbjct: 77  IDKASQILFLTEIVRGMWVVLEQFFRPPYTIMYPFEKGPLSARFRGEHALRRYPNGEERC 136

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAITIES  R  DG+RRT RYDIDM KCIYCG CQEACPVDAIVE  N
Sbjct: 137 IACKLCEAICPAQAITIESEAR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVETQN 195

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDS 160
            EF+TETR+EL Y+KE+LL NGDR E+EI  N+ ++ 
Sbjct: 196 QEFSTETREELLYNKEKLLLNGDRAEAEIAANLQSEH 232


>gi|240849392|ref|NP_001155795.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondri
           [Acyrthosiphon pisum]
 gi|239789288|dbj|BAH71275.1| ACYPI009382 [Acyrthosiphon pisum]
          Length = 206

 Score =  182 bits (462), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 111/159 (69%), Positives = 125/159 (78%), Gaps = 1/159 (0%)

Query: 5   RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64
              +S+ F+ E      + L +FFK   TINYPFEKG  SPRFRGEHALRRYP+GEERCI
Sbjct: 49  DQAISYAFVTELCRGAAVSLAHFFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEERCI 108

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           ACKLCEAICPAQAITIE+  R   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNF
Sbjct: 109 ACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNF 167

Query: 125 EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           E++TET +EL Y+KE+LLNNGD+WESEI  NI  D  YR
Sbjct: 168 EYSTETHEELLYNKEKLLNNGDKWESEIAANIHADHLYR 206


>gi|145355484|ref|XP_001421991.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144582230|gb|ABP00285.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 167

 Score =  182 bits (462), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 111/161 (68%), Positives = 127/161 (78%), Gaps = 1/161 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           +   +   L L E +    L L+YFF  K TINYPFEKG  SPRFRGEHALRRYP GEER
Sbjct: 8   VLDASAKTLVLTELLRGMSLTLKYFFDKKVTINYPFEKGPLSPRFRGEHALRRYPTGEER 67

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCEAICPAQAITIE+  R  DG+RRT RYDIDM KCI+CG CQEACPVDAIVEGP
Sbjct: 68  CIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIFCGFCQEACPVDAIVEGP 126

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           NFE+AT + +EL YDKE+LL+NGDRWE EI RN+ +++ YR
Sbjct: 127 NFEYATFSHEELLYDKEKLLSNGDRWEKEIARNLQSEAMYR 167


>gi|89053678|ref|YP_509129.1| NADH dehydrogenase subunit I [Jannaschia sp. CCS1]
 gi|115502532|sp|Q28T58|NUOI_JANSC RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|88863227|gb|ABD54104.1| NADH dehydrogenase subunit I [Jannaschia sp. CCS1]
          Length = 164

 Score =  182 bits (461), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 116/158 (73%), Positives = 128/158 (81%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
               +  L +F   F L ++YFF  K TINYP EKG  SPRFRGEHALRRYPNGEERCIA
Sbjct: 8   RAAKYFLLADFFKGFKLGMKYFFAPKVTINYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEAICPAQAITI++ PR  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE
Sbjct: 68  CKLCEAICPAQAITIDAEPR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FATETR+ELYYDKE+LL NG+RWES I  N+  D+PYR
Sbjct: 127 FATETREELYYDKEKLLANGERWESAIAHNLELDAPYR 164


>gi|163741480|ref|ZP_02148871.1| NADH dehydrogenase subunit I [Phaeobacter gallaeciensis 2.10]
 gi|161385214|gb|EDQ09592.1| NADH dehydrogenase subunit I [Phaeobacter gallaeciensis 2.10]
          Length = 164

 Score =  182 bits (461), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 115/158 (72%), Positives = 132/158 (83%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
               +  L++F   F L L+YFF  K T+NYP EKG  SPRFRGEHALRRYPNGEERCIA
Sbjct: 8   RAAKYFLLQDFWVGFKLGLKYFFAPKATLNYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEA+CPAQAITI++ PR  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE
Sbjct: 68  CKLCEAVCPAQAITIDAEPR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FATETR+EL+YDKE+LL+NG+RWE+EI RN+  D+PYR
Sbjct: 127 FATETREELFYDKEKLLSNGERWEAEIARNLELDAPYR 164


>gi|281353400|gb|EFB28984.1| hypothetical protein PANDA_010241 [Ailuropoda melanoleuca]
          Length = 174

 Score =  182 bits (461), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 110/164 (67%), Positives = 125/164 (76%), Gaps = 2/164 (1%)

Query: 1   MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59
           M+ +       L   E V    + L Y F+   TINYPFEKG  SPRFRGEHALRRYP+G
Sbjct: 12  MKSVTDRAAQTLLWTELVRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 71

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           EERCIACKLCEA+CPAQAITIE+ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIV
Sbjct: 72  EERCIACKLCEAVCPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 130

Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           EGPNFEF+TET +EL Y+KE+LL+NGD+WE+EI  NI  D  YR
Sbjct: 131 EGPNFEFSTETHEELLYNKEKLLSNGDKWEAEIAANIQADFLYR 174


>gi|281205874|gb|EFA80063.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Polysphondylium
           pallidum PN500]
          Length = 179

 Score =  182 bits (461), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 113/162 (69%), Positives = 126/162 (77%), Gaps = 1/162 (0%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
            I     +  FL E +   ++ + YFF+ K TINYPFEKG  SPRFRGEHALRRYP+GEE
Sbjct: 19  NIIDETANTFFLSEIMVGLYITMGYFFRKKATINYPFEKGPLSPRFRGEHALRRYPSGEE 78

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLCEAICPAQAITIE+ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIVEG
Sbjct: 79  RCIACKLCEAICPAQAITIEAEPRKD-GSRRTTRYDIDMTKCIYCGYCQEACPVDAIVEG 137

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           PNFEF TE+R EL Y+KE+LL NGDRWE+EI  NI  D  YR
Sbjct: 138 PNFEFTTESRIELLYNKEKLLANGDRWETEIAANIAADYLYR 179


>gi|84516725|ref|ZP_01004083.1| NADH dehydrogenase subunit I [Loktanella vestfoldensis SKA53]
 gi|84509193|gb|EAQ05652.1| NADH dehydrogenase subunit I [Loktanella vestfoldensis SKA53]
          Length = 166

 Score =  182 bits (461), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 113/158 (71%), Positives = 128/158 (81%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
               +  L++F   F L ++YFF  K T+NYP EKG  SPRFRGEHALRRY NGEERCIA
Sbjct: 10  RAAKYFLLQDFWAGFKLGMKYFFAPKATLNYPHEKGPLSPRFRGEHALRRYANGEERCIA 69

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEA+CPAQAITI++ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE
Sbjct: 70  CKLCEAVCPAQAITIDAEPRDD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 128

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           F+TETR+ELYYDK +LL NGDRWESEI RN+  D+PYR
Sbjct: 129 FSTETREELYYDKAKLLENGDRWESEIARNLALDAPYR 166


>gi|163738809|ref|ZP_02146223.1| NADH-quinone oxidoreductase, chain I [Phaeobacter gallaeciensis
           BS107]
 gi|161388137|gb|EDQ12492.1| NADH-quinone oxidoreductase, chain I [Phaeobacter gallaeciensis
           BS107]
          Length = 164

 Score =  182 bits (461), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 114/158 (72%), Positives = 132/158 (83%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
               +  L++F   F L L+YFF  K T+NYP EKG  SPRFRGEHALRRYPNGEERCIA
Sbjct: 8   RAAKYFLLQDFWVGFKLGLKYFFAPKATLNYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEA+CPAQAITI++ PR  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE
Sbjct: 68  CKLCEAVCPAQAITIDAEPR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FATETR+EL+YDK++LL+NG+RWE+EI RN+  D+PYR
Sbjct: 127 FATETREELFYDKDKLLSNGERWEAEIARNLELDAPYR 164


>gi|84686443|ref|ZP_01014337.1| NADH dehydrogenase subunit I [Maritimibacter alkaliphilus HTCC2654]
 gi|84665626|gb|EAQ12102.1| NADH dehydrogenase subunit I [Rhodobacterales bacterium HTCC2654]
          Length = 164

 Score =  182 bits (461), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 114/158 (72%), Positives = 133/158 (84%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
               +  L +++  F L ++YFFK K T+NYP EKG  SPRFRGEHALRRYPNGEERCIA
Sbjct: 8   RAAKYFLLTDWIKGFQLGIKYFFKPKATLNYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEAICPAQAITI++ PR  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE
Sbjct: 68  CKLCEAICPAQAITIDAEPR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FATETR+EL+YDK++LL+NG+RWE+EI RN+  D+PYR
Sbjct: 127 FATETREELFYDKDKLLDNGERWEAEIARNLELDAPYR 164


>gi|254488246|ref|ZP_05101451.1| NADH-quinone oxidoreductase chain i [Roseobacter sp. GAI101]
 gi|214045115|gb|EEB85753.1| NADH-quinone oxidoreductase chain i [Roseobacter sp. GAI101]
          Length = 164

 Score =  182 bits (461), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 111/158 (70%), Positives = 127/158 (80%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
            +  +  L++F     L  +YFF  K T+NYP EKG  SPRFRGEHALRRY NGEERCIA
Sbjct: 8   RHAKYFLLQDFYQGMKLGFKYFFAPKATLNYPHEKGPLSPRFRGEHALRRYANGEERCIA 67

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEA+CPAQAITI++ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE
Sbjct: 68  CKLCEAVCPAQAITIDAEPRDD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           F+TETR+ELYYDK +LL NGDRWE+EI RN+  D+PYR
Sbjct: 127 FSTETREELYYDKAKLLENGDRWEAEIARNLELDAPYR 164


>gi|125776379|ref|XP_001359257.1| GA17794 [Drosophila pseudoobscura pseudoobscura]
 gi|195152209|ref|XP_002017029.1| GL21733 [Drosophila persimilis]
 gi|54639000|gb|EAL28402.1| GA17794 [Drosophila pseudoobscura pseudoobscura]
 gi|194112086|gb|EDW34129.1| GL21733 [Drosophila persimilis]
          Length = 217

 Score =  182 bits (461), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 110/161 (68%), Positives = 123/161 (76%), Gaps = 1/161 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           I     + +F  E    F + L + FK   TINYPFEKG  SPRFRGEHALRRYP+GEER
Sbjct: 58  ITDRAATSMFFGELFRGFGVTLAHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEER 117

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCEAICPAQAITIE+  R   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGP
Sbjct: 118 CIACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 176

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           NFEF+TET +EL Y+KE+LL NGD+WESEI  N+  D  YR
Sbjct: 177 NFEFSTETHEELLYNKEKLLCNGDKWESEIASNLQADHLYR 217


>gi|219842412|gb|ACL37997.1| NADH dehydrogenase [Ochlerotatus taeniorhynchus]
          Length = 216

 Score =  182 bits (461), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 110/161 (68%), Positives = 121/161 (75%), Gaps = 1/161 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           I       +F  E      + L + FK   TINYPFEKG  SPRFRGEHALRRYP+GEER
Sbjct: 57  ITDRAAQTIFWTELFRGAAVTLAHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEER 116

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCEAICPAQAITIE+  R   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGP
Sbjct: 117 CIACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 175

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           NFEF+TET +EL Y+KE+LL NGD+WESEI  NI  D  YR
Sbjct: 176 NFEFSTETHEELLYNKEKLLCNGDKWESEIASNINADYLYR 216


>gi|254454656|ref|ZP_05068093.1| NADH-quinone oxidoreductase chain i [Octadecabacter antarcticus
           238]
 gi|198269062|gb|EDY93332.1| NADH-quinone oxidoreductase chain i [Octadecabacter antarcticus
           238]
          Length = 164

 Score =  182 bits (461), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 114/158 (72%), Positives = 129/158 (81%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
               +  L +F   F L  +YFF  K T+NYP EKG  SPRFRGEHALRRYPNGEERCIA
Sbjct: 8   RAAKYFLLADFAKGFRLGFKYFFAPKATLNYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEA+CPAQAITI++ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE
Sbjct: 68  CKLCEAVCPAQAITIDAEPRDD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           F+TETR+ELYYDKE+LL+NGDRWE+EI RN+  D+PYR
Sbjct: 127 FSTETREELYYDKEKLLDNGDRWEAEIARNLEMDAPYR 164


>gi|73988225|ref|XP_852209.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase 23 kDa
           subunit, mitochondrial precursor (Complex I-23KD)
           (CI-23KD) (TYKY subunit) [Canis familiaris]
          Length = 253

 Score =  182 bits (461), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 103/163 (63%), Positives = 121/163 (74%), Gaps = 2/163 (1%)

Query: 1   MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59
           M+ +       L   E +    + L Y F+   TINYPFEKG  SPRFRGEHALRRYP+G
Sbjct: 91  MKSVMDRAAQTLLWTELIRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 150

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           EERCIACKL EA+CPAQAITI++ PR   G+RRT RYDI M KCIYCG CQEACPVDAIV
Sbjct: 151 EERCIACKLHEAVCPAQAITIQAEPRAD-GSRRTTRYDIYMTKCIYCGFCQEACPVDAIV 209

Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPY 162
           EGPNFEF+TET +EL Y+KE+LL+NGD+W +E+  NI  D  Y
Sbjct: 210 EGPNFEFSTETHEELLYNKEKLLSNGDKWGAEVAANIQADYLY 252


>gi|66524760|ref|XP_623480.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial isoform 2 [Apis mellifera]
          Length = 201

 Score =  182 bits (461), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 110/162 (67%), Positives = 124/162 (76%), Gaps = 1/162 (0%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
           +     V+  F  E +    + + +FF    TINYPFEKG  SPRFRGEHALRRYP+GEE
Sbjct: 41  KFLDEAVNRSFFLEIIRGLGITMSHFFTEPATINYPFEKGPLSPRFRGEHALRRYPSGEE 100

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLCEAICPAQAITIE+  R   G+RRT RYDIDM KCIYCG CQEACPVDAIVEG
Sbjct: 101 RCIACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 159

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           PNFEF+TET +EL Y+KE+LLNNGD+WESEI  NI  D  YR
Sbjct: 160 PNFEFSTETHEELLYNKEKLLNNGDKWESEIASNIHADYLYR 201


>gi|168008160|ref|XP_001756775.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162692013|gb|EDQ78372.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 161

 Score =  182 bits (461), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 115/162 (70%), Positives = 129/162 (79%), Gaps = 1/162 (0%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
            +   +V+ LFL E      L L+YFF+ K TINYPFEKG  SPRFRGEHALRRYP GEE
Sbjct: 1   SVLDHSVNTLFLSEMARGMGLALKYFFEKKVTINYPFEKGPLSPRFRGEHALRRYPTGEE 60

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLCEA+CPAQAITIE+  R  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEG
Sbjct: 61  RCIACKLCEAVCPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 119

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           PNFEF TET +EL YDKE+LL NGDRWE+EI  N+ ++S YR
Sbjct: 120 PNFEFTTETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 161


>gi|83592898|ref|YP_426650.1| NADH dehydrogenase subunit I [Rhodospirillum rubrum ATCC 11170]
 gi|115502542|sp|Q2RU32|NUOI_RHORT RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|83575812|gb|ABC22363.1| NADH-quinone oxidoreductase, chain I [Rhodospirillum rubrum ATCC
           11170]
          Length = 162

 Score =  182 bits (461), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 111/163 (68%), Positives = 121/163 (74%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M      +  L L E V    L  RY  K K TINYPFEKG  SPRFRGEHALRRY NGE
Sbjct: 1   MTSIVRTLRSLTLWELVSGMALTFRYMLKPKVTINYPFEKGYLSPRFRGEHALRRYANGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE+ PR   G+RRT RYDIDM KCIYCG C+EACPVDAIVE
Sbjct: 61  ERCIACKLCEAICPAQAITIEAEPRTD-GSRRTTRYDIDMTKCIYCGFCEEACPVDAIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEFA ETR+EL Y+K +LL NGDRWE E+   +  D+ YR
Sbjct: 120 GPNFEFAAETREELLYNKAKLLANGDRWEPELALRLRKDAAYR 162


>gi|323138153|ref|ZP_08073226.1| NADH-quinone oxidoreductase, chain I [Methylocystis sp. ATCC 49242]
 gi|322396615|gb|EFX99143.1| NADH-quinone oxidoreductase, chain I [Methylocystis sp. ATCC 49242]
          Length = 162

 Score =  181 bits (460), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 130/163 (79%), Positives = 136/163 (83%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           MR        LFL EFVGAF+L +RYFFK K TINYP EK   SPRFRGEHALRRYPNGE
Sbjct: 1   MR-LDQAAKSLFLSEFVGAFWLSMRYFFKPKATINYPHEKNPISPRFRGEHALRRYPNGE 59

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE+GPR +DGTRRT RYDIDM+KCIYCG CQEACPVDAIVE
Sbjct: 60  ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGYCQEACPVDAIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPN EFATETR+ELYY KERLL NG RWE EI RNI  DSPYR
Sbjct: 120 GPNQEFATETREELYYTKERLLENGARWEREIARNIAMDSPYR 162


>gi|254512016|ref|ZP_05124083.1| NADH dehydrogenase i, i subunit [Rhodobacteraceae bacterium KLH11]
 gi|221535727|gb|EEE38715.1| NADH dehydrogenase i, i subunit [Rhodobacteraceae bacterium KLH11]
          Length = 164

 Score =  181 bits (460), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 116/158 (73%), Positives = 131/158 (82%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
               +  L++F     L L+YFF  K TINYP EKG  SPRFRGEHALRRYPNGEERCIA
Sbjct: 8   RAAKYFLLQDFWVGMKLGLKYFFSPKATINYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEAICPAQAITI++ PR  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE
Sbjct: 68  CKLCEAICPAQAITIDAEPR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FATETR+EL+YDKE+LL+NG+RWE+EI RN+  D+PYR
Sbjct: 127 FATETREELFYDKEKLLSNGERWEAEIARNLEMDAPYR 164


>gi|167534830|ref|XP_001749090.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163772514|gb|EDQ86165.1| predicted protein [Monosiga brevicollis MX1]
          Length = 204

 Score =  181 bits (460), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 110/160 (68%), Positives = 126/160 (78%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
              + + LF  E      L LRYFFK   T+ YPFEKG  SPRFRGEHALRRYP+GEERC
Sbjct: 46  IESSANQLFATEIARGLGLTLRYFFKKPATVYYPFEKGPLSPRFRGEHALRRYPSGEERC 105

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEA+CPAQAITIE+ PR  DG+RRT RYDIDM KCI+CG CQEACPVDAIVEGPN
Sbjct: 106 IACKLCEAVCPAQAITIETEPR-EDGSRRTTRYDIDMTKCIFCGFCQEACPVDAIVEGPN 164

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FE++TET QEL Y+KE+LL+NGD+WE EI +NI  +  YR
Sbjct: 165 FEYSTETHQELLYNKEKLLSNGDKWEVEIQKNIEAEFLYR 204


>gi|46126979|ref|XP_388043.1| NUIM_NEUCR NADH-ubiquinone oxidoreductase 23 kDa subunit,
           mitochondrial precursor (Complex I-23KD) (CI-23KD)
           [Gibberella zeae PH-1]
          Length = 213

 Score =  181 bits (460), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 103/162 (63%), Positives = 120/162 (74%), Gaps = 1/162 (0%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
                   F  + E     ++ L  +F+   TI YPFEKG  SPRFRGEHALRRYP+GEE
Sbjct: 53  STLDRMGKFFLMTEMARGMYVLLEQYFRPPYTIYYPFEKGPISPRFRGEHALRRYPSGEE 112

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLCEAICPAQAITIE+  R   G+RRT +YDIDM KCIYCG CQE+CPVDAIVE 
Sbjct: 113 RCIACKLCEAICPAQAITIEAEERAD-GSRRTTKYDIDMTKCIYCGFCQESCPVDAIVES 171

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           PN E+ATETR+EL Y+KE+LL+NGD+WE E+   I  DSPYR
Sbjct: 172 PNAEYATETREELLYNKEKLLSNGDKWEPELAAAIRADSPYR 213


>gi|326387453|ref|ZP_08209062.1| NADH dehydrogenase subunit I [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326208109|gb|EGD58917.1| NADH dehydrogenase subunit I [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 161

 Score =  181 bits (460), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 112/158 (70%), Positives = 127/158 (80%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
             V    L EFV A +L L+YFF+ K T+NYPFEK   SPRFRGEHALRRYPNGEERCIA
Sbjct: 5   QIVKTWTLWEFVKAHWLTLKYFFRPKATVNYPFEKNPISPRFRGEHALRRYPNGEERCIA 64

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEA+CPAQAITIE+ PR   G+RRT RYDIDM KCI+CG CQEACPVDA+VEGPNFE
Sbjct: 65  CKLCEAVCPAQAITIEAEPRDD-GSRRTTRYDIDMTKCIFCGFCQEACPVDAVVEGPNFE 123

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           +ATETR+EL YDK +LL NGD+WE  I  N+  D+PYR
Sbjct: 124 YATETREELLYDKAKLLANGDKWERAIAANLEADAPYR 161


>gi|159043871|ref|YP_001532665.1| NADH dehydrogenase subunit I [Dinoroseobacter shibae DFL 12]
 gi|226737390|sp|A8LIV0|NUOI_DINSH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|157911631|gb|ABV93064.1| NADH-quinone oxidoreductase [Dinoroseobacter shibae DFL 12]
          Length = 164

 Score =  181 bits (460), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 115/158 (72%), Positives = 130/158 (82%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
               +  L +F   F L L+YFFK K T+ YP EKG  SPRFRGEHALRRYPNGEERCIA
Sbjct: 8   RAAKYFLLFDFFAGFKLGLKYFFKPKATLAYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEAICPAQAITI++ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE
Sbjct: 68  CKLCEAICPAQAITIDAEPRDD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FATETR+EL+YDKE+LL+NG+RWE+EI RN+  D+PYR
Sbjct: 127 FATETREELFYDKEKLLDNGERWEAEIARNLELDAPYR 164


>gi|84502622|ref|ZP_01000741.1| NADH dehydrogenase I, I subunit [Oceanicola batsensis HTCC2597]
 gi|84389017|gb|EAQ01815.1| NADH dehydrogenase I, I subunit [Oceanicola batsensis HTCC2597]
          Length = 164

 Score =  181 bits (460), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 115/158 (72%), Positives = 129/158 (81%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
               +  L +    F + L+YFFK K T+NYP EKG  SPRFRGEHALRRYPNGEERCIA
Sbjct: 8   RAAKYFLLWDVWQGFKMGLKYFFKPKATVNYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEAICPAQAITI++ PR  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE
Sbjct: 68  CKLCEAICPAQAITIDAEPR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FATETR+ELYYDK +LL NG+RWE+EI RN+  D+PYR
Sbjct: 127 FATETREELYYDKAKLLANGERWEAEIARNLEIDAPYR 164


>gi|126729567|ref|ZP_01745380.1| NADH dehydrogenase subunit I [Sagittula stellata E-37]
 gi|126709686|gb|EBA08739.1| NADH dehydrogenase subunit I [Sagittula stellata E-37]
          Length = 164

 Score =  181 bits (460), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 113/158 (71%), Positives = 129/158 (81%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
               +  L +F+  F L ++YFF  K T+NYP EKG  SPRFRGEHALRRYPNGEERCIA
Sbjct: 8   RAAKYFLLADFMKGFQLGMKYFFAPKATVNYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEAICPAQAITI++ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE
Sbjct: 68  CKLCEAICPAQAITIDAEPRDD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           F+TETR+EL+YDK +LL NGDRWE+EI RN+  D+PYR
Sbjct: 127 FSTETREELFYDKAKLLENGDRWEAEIARNLELDAPYR 164


>gi|66818078|ref|XP_642732.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Dictyostelium
           discoideum AX4]
 gi|60470829|gb|EAL68801.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Dictyostelium
           discoideum AX4]
          Length = 210

 Score =  181 bits (459), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 112/162 (69%), Positives = 126/162 (77%), Gaps = 1/162 (0%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
           ++     +  F+ E +   ++ + YFF+ K TINYPFEKG  SPRFRGEHALRRYP GEE
Sbjct: 50  KVVDDAATAFFMTEIMWGLYITMGYFFRKKCTINYPFEKGPLSPRFRGEHALRRYPTGEE 109

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLCEAICPAQAITIE+ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIVEG
Sbjct: 110 RCIACKLCEAICPAQAITIEAEPRQD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 168

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           PNFEF TETR EL Y+KE+LL NGDRWE+EI  NI  D  YR
Sbjct: 169 PNFEFTTETRLELLYNKEKLLANGDRWETEIASNIAADYLYR 210


>gi|49475650|ref|YP_033691.1| NADH dehydrogenase subunit I [Bartonella henselae str. Houston-1]
 gi|81696159|sp|Q6G396|NUOI_BARHE RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|49238457|emb|CAF27685.1| NADH dehydrogenase I, I subunit [Bartonella henselae str.
           Houston-1]
          Length = 163

 Score =  181 bits (459), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 126/163 (77%), Positives = 137/163 (84%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M         L L EF+ AFFL +R FF  K TINYP+EKG  S RFRGEHALRRYPNGE
Sbjct: 1   MLGLIQAAKSLLLLEFMSAFFLAMRQFFSPKPTINYPYEKGVVSQRFRGEHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPV+AIVE
Sbjct: 61  ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVEAIVE 120

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEFATETR+ELYYDKE+LL NGDRWE EI RNI+ D+PYR
Sbjct: 121 GPNFEFATETREELYYDKEKLLMNGDRWEREIARNILMDAPYR 163


>gi|149202658|ref|ZP_01879630.1| NADH dehydrogenase subunit I [Roseovarius sp. TM1035]
 gi|149143940|gb|EDM31974.1| NADH dehydrogenase subunit I [Roseovarius sp. TM1035]
          Length = 164

 Score =  181 bits (459), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 116/158 (73%), Positives = 128/158 (81%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
               +  L +F   F L L+YFF  K T+NYP EKG  SPRFRGEHALRRYPNGEERCIA
Sbjct: 8   RAAGYFLLSDFFKGFKLGLKYFFAPKATLNYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEAICPAQAITI++ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE
Sbjct: 68  CKLCEAICPAQAITIDAEPRDD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FATETR+EL+YDK RLL NGDRWE+EI RN+  D+PYR
Sbjct: 127 FATETREELFYDKARLLANGDRWEAEIARNLEMDAPYR 164


>gi|254469568|ref|ZP_05082973.1| NADH-quinone oxidoreductase subunit i [Pseudovibrio sp. JE062]
 gi|211961403|gb|EEA96598.1| NADH-quinone oxidoreductase subunit i [Pseudovibrio sp. JE062]
          Length = 153

 Score =  181 bits (459), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 127/153 (83%), Positives = 137/153 (89%)

Query: 11  LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70
           + LKEFV AFFL +RYFFK K TINYPFEKG  SPRFRGEHALRRYPNGEERCIACKLCE
Sbjct: 1   MLLKEFVSAFFLAMRYFFKPKPTINYPFEKGPVSPRFRGEHALRRYPNGEERCIACKLCE 60

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
           AICPAQAITIE+GPR +DGTRRT RYDIDM KCIYCG CQEACPVDAIVEGPNFEFATET
Sbjct: 61  AICPAQAITIEAGPRRNDGTRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATET 120

Query: 131 RQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           R+EL+YDK++LL NG+RWE EI RNI  D+PYR
Sbjct: 121 REELFYDKDKLLANGERWEREIARNIELDAPYR 153


>gi|114771827|ref|ZP_01449220.1| NADH dehydrogenase subunit I [alpha proteobacterium HTCC2255]
 gi|114547643|gb|EAU50534.1| NADH dehydrogenase subunit I [alpha proteobacterium HTCC2255]
          Length = 163

 Score =  181 bits (458), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 113/158 (71%), Positives = 129/158 (81%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
               +  L +F     L L+YFFK K T+NYP EKG  SPRFRGEHALRRY NGEERCIA
Sbjct: 7   RAGKYFLLADFFIGMKLGLKYFFKPKATLNYPHEKGPLSPRFRGEHALRRYANGEERCIA 66

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEA+CPAQAITI++ PR  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE
Sbjct: 67  CKLCEAVCPAQAITIDAEPR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 125

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FATETR+EL+Y+K +LL+NGDRWE+EI RN+  D+PYR
Sbjct: 126 FATETREELFYNKNKLLSNGDRWEAEISRNLELDAPYR 163


>gi|83942660|ref|ZP_00955121.1| NADH dehydrogenase subunit I [Sulfitobacter sp. EE-36]
 gi|83846753|gb|EAP84629.1| NADH dehydrogenase subunit I [Sulfitobacter sp. EE-36]
          Length = 164

 Score =  181 bits (458), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 111/158 (70%), Positives = 130/158 (82%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
            +  +  L++F     L ++Y FK K TINYP EKG  SPRFRGEHALRRYPNGEERCIA
Sbjct: 8   RHAKYFLLQDFYQGLKLGIKYMFKPKATINYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEA+CPAQAITI++ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE
Sbjct: 68  CKLCEAVCPAQAITIDAEPRDD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           F+TETR+EL+YDK +LL+NG+RWE+EI RN+  D+PYR
Sbjct: 127 FSTETREELFYDKAKLLDNGERWEAEIARNLELDAPYR 164


>gi|164663359|ref|XP_001732801.1| hypothetical protein MGL_0576 [Malassezia globosa CBS 7966]
 gi|159106704|gb|EDP45587.1| hypothetical protein MGL_0576 [Malassezia globosa CBS 7966]
          Length = 245

 Score =  181 bits (458), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 104/163 (63%), Positives = 115/163 (70%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           +             E     ++ L  FF+   TI YPFEKG  SPRFRGEHALRRYP GE
Sbjct: 84  LSSLEKAGRLFLFTEMARGLWMTLENFFRPPYTIQYPFEKGPVSPRFRGEHALRRYPTGE 143

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPA AITIES PR   G+RRT RYDIDM KCIYCG+CQEACPVDAIVE
Sbjct: 144 ERCIACKLCEAICPALAITIESEPRMD-GSRRTTRYDIDMTKCIYCGMCQEACPVDAIVE 202

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               EFATETR+EL+Y+KE+LL NGDR E+EI  NI  D   R
Sbjct: 203 TQTLEFATETREELFYNKEKLLANGDRAEAEIASNIYADHLMR 245


>gi|260426977|ref|ZP_05780956.1| NADH-quinone oxidoreductase subunit i [Citreicella sp. SE45]
 gi|260421469|gb|EEX14720.1| NADH-quinone oxidoreductase subunit i [Citreicella sp. SE45]
          Length = 164

 Score =  181 bits (458), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 114/158 (72%), Positives = 131/158 (82%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
               +  L +F+  F L LRYFF  K T+NYP EKG  SPRFRGEHALRRYPNGEERCIA
Sbjct: 8   RAAKYFLLADFIKGFQLGLRYFFAPKPTLNYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEAICPAQAITI++ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE
Sbjct: 68  CKLCEAICPAQAITIDAEPRDD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           F+TETR+EL+YDK++LL+NG+RWE+EI RN+  D+PYR
Sbjct: 127 FSTETREELFYDKQKLLDNGERWEAEIARNLELDAPYR 164


>gi|47215704|emb|CAG04788.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 212

 Score =  181 bits (458), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 112/164 (68%), Positives = 123/164 (75%), Gaps = 2/164 (1%)

Query: 1   MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59
           MR I     + L   E      + L Y F+   TINYPFEKG  SPRFRGEHALRRYPNG
Sbjct: 50  MRSITDRAATTLLWTELFRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPNG 109

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           EERCIACKLCEAICPAQAITIE+  R   G+RRT RYDIDM KCIYCG CQEACPVDAIV
Sbjct: 110 EERCIACKLCEAICPAQAITIEAETRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 168

Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           +GPNFEF+TET +EL Y+KE+LLNNGD+WE EI  NI  D  YR
Sbjct: 169 QGPNFEFSTETHEELLYNKEKLLNNGDQWEVEISENIRADYLYR 212


>gi|188580277|ref|YP_001923722.1| NADH dehydrogenase subunit I [Methylobacterium populi BJ001]
 gi|226737400|sp|B1ZA38|NUOI_METPB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|179343775|gb|ACB79187.1| NADH-quinone oxidoreductase, chain I [Methylobacterium populi
           BJ001]
          Length = 162

 Score =  180 bits (457), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 123/163 (75%), Positives = 135/163 (82%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M+        L LKEFV  FFL ++YF K K TINYPFE G   PRFRGEHALRRYPNGE
Sbjct: 1   MK-LDQVARSLLLKEFVSGFFLAMKYFLKPKATINYPFEMGHRGPRFRGEHALRRYPNGE 59

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE+GPR +DGTRRT RYDIDM+KCIYCG+CQEACPVDAIVE
Sbjct: 60  ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGMCQEACPVDAIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEF+ ETR+EL YDK++LL NGDRWE EI RNI  D+PYR
Sbjct: 120 GPNFEFSVETREELLYDKQKLLENGDRWEREIARNIAIDAPYR 162


>gi|256078647|ref|XP_002575606.1| NADH-ubiquinone oxidoreductase [Schistosoma mansoni]
 gi|238660848|emb|CAZ31839.1| NADH-ubiquinone oxidoreductase 1, chain, putative [Schistosoma
           mansoni]
          Length = 206

 Score =  180 bits (457), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 108/160 (67%), Positives = 121/160 (75%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           F     +L L + +    L     FK   T+NYPFEKG  SPRFRGEHALRRYP+GEERC
Sbjct: 48  FENVTRWLILADILRGLRLTFGMIFKEPATLNYPFEKGPLSPRFRGEHALRRYPSGEERC 107

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAITIE+ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPN
Sbjct: 108 IACKLCEAICPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 166

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FE++TET +EL Y+KE+LL NGDRWE EI  N+  D  YR
Sbjct: 167 FEYSTETHEELLYNKEKLLQNGDRWEVEISENLKADYVYR 206


>gi|319407259|emb|CBI80898.1| NADH dehydrogenase I chain I [Bartonella sp. 1-1C]
          Length = 163

 Score =  180 bits (457), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 128/163 (78%), Positives = 138/163 (84%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M         L L EF+ AFFL +R FF  K TINYP+EKG  SPRFRGEHALRRYPNGE
Sbjct: 1   MSSLIQAAKSLLLLEFISAFFLAMRQFFSPKPTINYPYEKGCVSPRFRGEHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE+GPR +DGTRRT+RYDIDM+KCIYCG CQEACPVDAIVE
Sbjct: 61  ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTIRYDIDMVKCIYCGFCQEACPVDAIVE 120

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEFATE R+ELYYDKE+LLNNGDRWE EI RNI+ DSPYR
Sbjct: 121 GPNFEFATEMREELYYDKEKLLNNGDRWEREIARNILIDSPYR 163


>gi|110680455|ref|YP_683462.1| NADH dehydrogenase subunit I [Roseobacter denitrificans OCh 114]
 gi|115502543|sp|Q163R7|NUOI_ROSDO RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|109456571|gb|ABG32776.1| NADH-quinone oxidoreductase chain I [Roseobacter denitrificans OCh
           114]
          Length = 164

 Score =  180 bits (456), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 111/158 (70%), Positives = 129/158 (81%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
               +  L++F     L ++YFF  K T+NYP EKG  SPRFRGEHALRRYPNGEERCIA
Sbjct: 8   RAAKYFLLQDFWVGMKLGMKYFFAPKATLNYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEA+CPAQAITI++ PR   G+RRT RYDIDM KCIYCG C+EACPVDAIVEGPNFE
Sbjct: 68  CKLCEAVCPAQAITIDAEPRDD-GSRRTTRYDIDMTKCIYCGFCEEACPVDAIVEGPNFE 126

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           F+TETR+ELYYDK+RLL NG+RWE+EI RN+  D+PYR
Sbjct: 127 FSTETREELYYDKDRLLANGERWEAEIARNLEMDAPYR 164


>gi|330805166|ref|XP_003290557.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Dictyostelium
           purpureum]
 gi|325079303|gb|EGC32909.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Dictyostelium
           purpureum]
          Length = 203

 Score =  180 bits (456), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 112/162 (69%), Positives = 126/162 (77%), Gaps = 1/162 (0%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
           ++     +  FL E +   ++   YFF+ K TINYPFEK   SPRFRGEHALRRYP GEE
Sbjct: 43  KVIDDAANSFFLTEIMWGMYITAGYFFRKKCTINYPFEKTPISPRFRGEHALRRYPTGEE 102

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLCEAICPAQAITIE+ PR  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEG
Sbjct: 103 RCIACKLCEAICPAQAITIEAEPR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 161

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           PNFEF TETR EL Y+KE+LL NGDRWE+EI  NI ++  YR
Sbjct: 162 PNFEFTTETRIELLYNKEKLLANGDRWETEIASNIASEYLYR 203


>gi|148259940|ref|YP_001234067.1| NADH dehydrogenase subunit I [Acidiphilium cryptum JF-5]
 gi|326403106|ref|YP_004283187.1| NADH-quinone oxidoreductase subunit I [Acidiphilium multivorum
           AIU301]
 gi|146401621|gb|ABQ30148.1| NADH dehydrogenase subunit I [Acidiphilium cryptum JF-5]
 gi|325049967|dbj|BAJ80305.1| NADH-quinone oxidoreductase subunit I [Acidiphilium multivorum
           AIU301]
          Length = 163

 Score =  180 bits (456), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 117/163 (71%), Positives = 129/163 (79%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M           L E +    L LRYFF  K T+NYPFEK + SPRF+GEHALRRYPNGE
Sbjct: 2   MARLDRIAHRFLLLEILSGLRLTLRYFFTRKATLNYPFEKNAISPRFKGEHALRRYPNGE 61

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE+ PR  DG+RRT RYDIDM KCIYCGLC+EACPVDAIVE
Sbjct: 62  ERCIACKLCEAICPAQAITIEAEPR-EDGSRRTTRYDIDMTKCIYCGLCEEACPVDAIVE 120

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEFATETR+EL YDKERLL NGDRWESE+ + +  D+PYR
Sbjct: 121 GPNFEFATETREELMYDKERLLANGDRWESELAKRLELDAPYR 163


>gi|85703194|ref|ZP_01034298.1| NADH dehydrogenase subunit I [Roseovarius sp. 217]
 gi|85672122|gb|EAQ26979.1| NADH dehydrogenase subunit I [Roseovarius sp. 217]
          Length = 164

 Score =  180 bits (456), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 114/158 (72%), Positives = 128/158 (81%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
               +  L +F+  F L L+YFF  K T+NYP EKG  S RFRGEHALRRYPNGEERCIA
Sbjct: 8   RAAGYFLLSDFIKGFRLGLKYFFAPKATLNYPHEKGPLSVRFRGEHALRRYPNGEERCIA 67

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEAICPAQAITI++ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE
Sbjct: 68  CKLCEAICPAQAITIDAEPRDD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FATETR+EL+YDK +LL NGDRWE+EI RN+  D+PYR
Sbjct: 127 FATETREELFYDKAKLLANGDRWEAEIARNLEMDAPYR 164


>gi|163732050|ref|ZP_02139496.1| NADH dehydrogenase subunit I [Roseobacter litoralis Och 149]
 gi|161394348|gb|EDQ18671.1| NADH dehydrogenase subunit I [Roseobacter litoralis Och 149]
          Length = 164

 Score =  180 bits (456), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 112/158 (70%), Positives = 130/158 (82%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
            +  +  L++F     L L+YFF  K T+NYP EKG  SPRFRGEHALRRYPNGEERCIA
Sbjct: 8   RHAKYFLLQDFWVGMKLGLKYFFAPKATLNYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEA+CPAQAITI++ PR   G+RRT RYDIDM KCIYCG C+EACPVDAIVEGPNFE
Sbjct: 68  CKLCEAVCPAQAITIDAEPRDD-GSRRTTRYDIDMTKCIYCGFCEEACPVDAIVEGPNFE 126

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           F+TETR+ELYYDK+RLL NG+RWE+EI RN+  D+PYR
Sbjct: 127 FSTETREELYYDKDRLLANGERWEAEIARNLEMDAPYR 164


>gi|217979057|ref|YP_002363204.1| NADH dehydrogenase subunit I [Methylocella silvestris BL2]
 gi|259514776|sp|B8EIM5|NUOI_METSB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|217504433|gb|ACK51842.1| NADH-quinone oxidoreductase, chain I [Methylocella silvestris BL2]
          Length = 162

 Score =  180 bits (456), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 124/163 (76%), Positives = 135/163 (82%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M+        LFL EFVGAF L +RYFFK K T+NYP EK   SPR+RGEHALRRYPNGE
Sbjct: 1   MK-LDQAAKALFLSEFVGAFLLSMRYFFKPKPTLNYPHEKNPQSPRYRGEHALRRYPNGE 59

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE+GPR +DGTRRT RYDIDM+KCIYCG CQEACPVDAIVE
Sbjct: 60  ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGFCQEACPVDAIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPN EF+ ETR+ELYYDK+RLL NG RWE EI RNI  D+PYR
Sbjct: 120 GPNAEFSVETREELYYDKDRLLENGARWEREIARNIALDAPYR 162


>gi|170748469|ref|YP_001754729.1| NADH dehydrogenase subunit I [Methylobacterium radiotolerans JCM
           2831]
 gi|226737401|sp|B1LUM8|NUOI_METRJ RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|170654991|gb|ACB24046.1| NADH-quinone oxidoreductase, chain I [Methylobacterium
           radiotolerans JCM 2831]
          Length = 162

 Score =  180 bits (456), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 123/163 (75%), Positives = 134/163 (82%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M+        L LKEFV    L +RYFFK K TINYPFE G   PRFRGEHALRRYPNGE
Sbjct: 1   MK-LDQVAKSLLLKEFVSGMILGMRYFFKPKATINYPFEMGHRGPRFRGEHALRRYPNGE 59

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE+GPR +DGTRRT RYDIDM+KCIYCG+CQEACPVDAIVE
Sbjct: 60  ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGMCQEACPVDAIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEF+ ETR+EL YDK++LL NGDRWE EI RNI  D+PYR
Sbjct: 120 GPNFEFSVETREELLYDKQKLLLNGDRWEREIARNIAMDAPYR 162


>gi|126740388|ref|ZP_01756076.1| NADH dehydrogenase subunit I [Roseobacter sp. SK209-2-6]
 gi|126718524|gb|EBA15238.1| NADH dehydrogenase subunit I [Roseobacter sp. SK209-2-6]
          Length = 164

 Score =  180 bits (456), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 115/158 (72%), Positives = 130/158 (82%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
               +  L++F   F L L+YFF  K T+NYP EKG  SPRFRGEHALRRYPNGEERCIA
Sbjct: 8   RAAKYFLLQDFWVGFKLGLKYFFAPKATLNYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEAICPAQAITI++ PR  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE
Sbjct: 68  CKLCEAICPAQAITIDAEPR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FATETR+EL+YDK +LL NG+RWE+EI RN+  D+PYR
Sbjct: 127 FATETREELFYDKAKLLENGERWEAEIARNLEIDAPYR 164


>gi|310816705|ref|YP_003964669.1| NADH dehydrogenase subunit I [Ketogulonicigenium vulgare Y25]
 gi|308755440|gb|ADO43369.1| NADH dehydrogenase subunit I [Ketogulonicigenium vulgare Y25]
          Length = 164

 Score =  179 bits (455), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 109/158 (68%), Positives = 129/158 (81%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
               +  LK+    F L ++YFF+ + T+NYP EK   SPRFRGEHALRRYP+GEERCIA
Sbjct: 8   RAAKYFLLKDVWDGFRLGMKYFFRPRPTVNYPHEKVPLSPRFRGEHALRRYPSGEERCIA 67

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEAICPAQAITI++ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE
Sbjct: 68  CKLCEAICPAQAITIDAEPRDD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FATE+R+EL+YDK++LL NGD+WE+EI RN+  D+PYR
Sbjct: 127 FATESREELFYDKDKLLANGDKWEAEIARNLAADAPYR 164


>gi|319408587|emb|CBI82242.1| NADH dehydrogenase I chain I [Bartonella schoenbuchensis R1]
          Length = 166

 Score =  179 bits (455), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 127/163 (77%), Positives = 139/163 (85%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M         L L EF+ AFFL +R FF  K TINYP+EKG  SPRFRGEHALRRYPNGE
Sbjct: 4   MSGLIQAAKSLLLLEFISAFFLAMRQFFSPKPTINYPYEKGFVSPRFRGEHALRRYPNGE 63

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE+GPRC+DGTRRT+RYDIDM+KCIYCG CQEACPVDAIVE
Sbjct: 64  ERCIACKLCEAICPAQAITIEAGPRCNDGTRRTIRYDIDMVKCIYCGFCQEACPVDAIVE 123

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEFATE R+ELYYDKE+LL+NGDRWE EI RNI+ D+PYR
Sbjct: 124 GPNFEFATEMREELYYDKEKLLSNGDRWEREIARNILMDAPYR 166


>gi|119384970|ref|YP_916026.1| NADH dehydrogenase subunit I [Paracoccus denitrificans PD1222]
 gi|156633536|sp|A1B486|NUOI_PARDP RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit 9; AltName: Full=NADH
           dehydrogenase I subunit I; AltName: Full=NADH-quinone
           oxidoreductase subunit 9; Short=NQO9; AltName:
           Full=NDH-1 subunit 9; AltName: Full=NDH-1 subunit I
 gi|119374737|gb|ABL70330.1| NADH dehydrogenase subunit I [Paracoccus denitrificans PD1222]
          Length = 163

 Score =  179 bits (455), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 112/160 (70%), Positives = 131/160 (81%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           F     +  + +F+  F L +RYF   K T+NYP EKG  SPRFRGEHALRRYPNGEERC
Sbjct: 5   FARATKYFLMWDFIKGFGLGMRYFVSPKPTLNYPHEKGPLSPRFRGEHALRRYPNGEERC 64

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEA+CPAQAITI++ PR  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGPN
Sbjct: 65  IACKLCEAVCPAQAITIDAEPR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 123

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FE+ATETR+EL+YDK++LL NG+RWE+EI RN+  D+PYR
Sbjct: 124 FEYATETREELFYDKQKLLANGERWEAEIARNLQLDAPYR 163


>gi|83953899|ref|ZP_00962620.1| NADH dehydrogenase subunit I [Sulfitobacter sp. NAS-14.1]
 gi|83841844|gb|EAP81013.1| NADH dehydrogenase subunit I [Sulfitobacter sp. NAS-14.1]
          Length = 164

 Score =  179 bits (454), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 111/158 (70%), Positives = 130/158 (82%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
            +  +  L++F     L ++Y FK K TINYP EKG  SPRFRGEHALRRYPNGEERCIA
Sbjct: 8   RHAKYFLLQDFYHGLKLGIKYMFKPKATINYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEA+CPAQAITI++ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE
Sbjct: 68  CKLCEAVCPAQAITIDAEPRDD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           F+TETR+EL+YDK +LL+NG+RWE+EI RN+  D+PYR
Sbjct: 127 FSTETREELFYDKAKLLDNGERWEAEIARNLELDAPYR 164


>gi|121601727|ref|YP_989078.1| NADH dehydrogenase subunit I [Bartonella bacilliformis KC583]
 gi|156632577|sp|A1USX5|NUOI_BARBK RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|120613904|gb|ABM44505.1| NADH dehydrogenase (quinone), I subunit [Bartonella bacilliformis
           KC583]
          Length = 163

 Score =  179 bits (454), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 126/163 (77%), Positives = 136/163 (83%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M         L L EFV AFFL +R FF  K TINYP+EKG  S RFRGEHALRRYPNGE
Sbjct: 1   MSGLIQAAKSLLLLEFVDAFFLAMRQFFSPKPTINYPYEKGFVSHRFRGEHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPV+AIVE
Sbjct: 61  ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVEAIVE 120

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEFATE R+ELYYDKE+LL NGDRWE EI RNI+ D+PYR
Sbjct: 121 GPNFEFATEMREELYYDKEKLLLNGDRWEREIARNILMDAPYR 163


>gi|328783520|ref|XP_003250306.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial isoform 1 [Apis mellifera]
          Length = 175

 Score =  179 bits (454), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 110/162 (67%), Positives = 124/162 (76%), Gaps = 1/162 (0%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
           +     V+  F  E +    + + +FF    TINYPFEKG  SPRFRGEHALRRYP+GEE
Sbjct: 15  KFLDEAVNRSFFLEIIRGLGITMSHFFTEPATINYPFEKGPLSPRFRGEHALRRYPSGEE 74

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLCEAICPAQAITIE+  R   G+RRT RYDIDM KCIYCG CQEACPVDAIVEG
Sbjct: 75  RCIACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 133

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           PNFEF+TET +EL Y+KE+LLNNGD+WESEI  NI  D  YR
Sbjct: 134 PNFEFSTETHEELLYNKEKLLNNGDKWESEIASNIHADYLYR 175


>gi|296536148|ref|ZP_06898276.1| NADH-quinone oxidoreductase subunit I [Roseomonas cervicalis ATCC
           49957]
 gi|296263519|gb|EFH10016.1| NADH-quinone oxidoreductase subunit I [Roseomonas cervicalis ATCC
           49957]
          Length = 163

 Score =  179 bits (453), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 113/164 (68%), Positives = 126/164 (76%), Gaps = 2/164 (1%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNG 59
           M           L E      L L+YFF   K TINYP EK + SPRF+GEHALRRYPNG
Sbjct: 1   MATLDRMARSFLLAELASGMALTLKYFFAPNKGTINYPNEKTALSPRFKGEHALRRYPNG 60

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           EERCIACKLCEA+CPA AITIE+ PR  DG+RRT RYDIDM KCIYCGLC+EACPVDAIV
Sbjct: 61  EERCIACKLCEAVCPALAITIEAEPR-EDGSRRTTRYDIDMTKCIYCGLCEEACPVDAIV 119

Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           EGPNFEFATETR+EL Y+K+RLL+NGDRWE EI R +  D+PYR
Sbjct: 120 EGPNFEFATETREELIYNKDRLLSNGDRWEPEIARRLELDAPYR 163


>gi|254465688|ref|ZP_05079099.1| NADH-quinone oxidoreductase subunit i [Rhodobacterales bacterium
           Y4I]
 gi|206686596|gb|EDZ47078.1| NADH-quinone oxidoreductase subunit i [Rhodobacterales bacterium
           Y4I]
          Length = 164

 Score =  179 bits (453), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 115/158 (72%), Positives = 132/158 (83%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
               +  L++F   F L ++YFF  K T+NYP EKG  SPRFRGEHALRRYPNGEERCIA
Sbjct: 8   RAAKYFLLQDFWDGFKLGMKYFFAPKATLNYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEAICPAQAITI++ PR  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE
Sbjct: 68  CKLCEAICPAQAITIDAEPR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FATETR+EL+YDKE+LL+NG+RWE+EI RN+  D+PYR
Sbjct: 127 FATETREELFYDKEKLLSNGERWEAEIARNLEIDAPYR 164


>gi|50554865|ref|XP_504841.1| YALI0F00924p [Yarrowia lipolytica]
 gi|6689658|emb|CAB65524.1| subunit NUIM of protein NADH:Ubiquinone Oxidoreductase (Complex I)
           [Yarrowia lipolytica]
 gi|49650711|emb|CAG77643.1| YALI0F00924p [Yarrowia lipolytica]
          Length = 229

 Score =  178 bits (452), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 101/160 (63%), Positives = 119/160 (74%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
                 +  L E     ++ L  FF+A  TI YPFEKG  SPRFRGEHALRRYP+GEERC
Sbjct: 71  LSKATKYFLLAEMFRGLYVVLEQFFRAPYTIYYPFEKGPVSPRFRGEHALRRYPSGEERC 130

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPA AITI++  R   G+RRT +YDIDM KCIYCG CQE+CPVDAIVE PN
Sbjct: 131 IACKLCEAICPALAITIDAEERID-GSRRTTKYDIDMTKCIYCGYCQESCPVDAIVETPN 189

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            E+ATETR+EL Y+KE+LL NGD+WE E+   +  D+PYR
Sbjct: 190 VEYATETREELLYNKEKLLANGDKWELELQYALDADAPYR 229


>gi|182679344|ref|YP_001833490.1| NADH dehydrogenase subunit I [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|259514766|sp|B2IHV8|NUOI_BEII9 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|182635227|gb|ACB96001.1| NADH-quinone oxidoreductase, chain I [Beijerinckia indica subsp.
           indica ATCC 9039]
          Length = 162

 Score =  178 bits (452), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 125/163 (76%), Positives = 136/163 (83%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           MR        LFLKEFVGAF L +RYFFK + T+NYP EK   SPR+RGEHALRRYPNGE
Sbjct: 1   MR-LDSAAKALFLKEFVGAFALSMRYFFKPRPTLNYPHEKNPQSPRYRGEHALRRYPNGE 59

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPA+AITIE+GPR +DGTRRT RYDIDM+KCIYCG CQEACPVDAIVE
Sbjct: 60  ERCIACKLCEAICPAKAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGFCQEACPVDAIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPN EFA ETR+ELYYDK+RLL NG RWE EI RNI  D+PYR
Sbjct: 120 GPNAEFAVETREELYYDKDRLLQNGARWEREIARNIALDAPYR 162


>gi|226288083|gb|EEH43596.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Paracoccidioides
           brasiliensis Pb18]
          Length = 229

 Score =  178 bits (452), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 104/160 (65%), Positives = 120/160 (75%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
                 +  + E +   ++ L  FF+   TI YPFEKG  SPRFRGEHALRRYP+GEERC
Sbjct: 71  LDKAGKYFLMTEMLRGMYVVLEQFFRPPYTIFYPFEKGPISPRFRGEHALRRYPSGEERC 130

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAITIE+  R  DG+RRT RYDIDM KCIYCG CQE+CPVDAIVE PN
Sbjct: 131 IACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQESCPVDAIVESPN 189

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            E+ATETR+EL Y+KE+LL NGD+WE EI      D+PYR
Sbjct: 190 AEYATETREELLYNKEKLLANGDKWEPEIAAAARADAPYR 229


>gi|114569913|ref|YP_756593.1| NADH dehydrogenase subunit I [Maricaulis maris MCS10]
 gi|122316117|sp|Q0APY2|NUOI_MARMM RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|114340375|gb|ABI65655.1| NADH dehydrogenase subunit I [Maricaulis maris MCS10]
          Length = 162

 Score =  178 bits (452), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 115/163 (70%), Positives = 128/163 (78%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   +       L +F  AF L +RYFF  K T+NYPFEKG  SPRFRG+HALRRY NGE
Sbjct: 1   MGRIQQAFRGALLMDFWSAFGLGMRYFFAKKATLNYPFEKGPLSPRFRGQHALRRYANGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE+ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIVE
Sbjct: 61  ERCIACKLCEAICPAQAITIEAEPRSD-GSRRTTRYDIDMTKCIYCGYCQEACPVDAIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEFA ETR+EL+YDK +LL NGDRWE EI +N+  D+PYR
Sbjct: 120 GPNFEFAAETREELFYDKAKLLENGDRWEREIAKNLELDAPYR 162


>gi|319404251|emb|CBI77844.1| NADH dehydrogenase I chain I [Bartonella rochalimae ATCC BAA-1498]
          Length = 163

 Score =  178 bits (452), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 129/163 (79%), Positives = 139/163 (85%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M         L L EF+ AFFL +R FF  K TINYP+EKG  SPRFRGEHALRRYPNGE
Sbjct: 1   MSSLIQAAKSLLLLEFISAFFLAMRQFFSPKPTINYPYEKGCVSPRFRGEHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE+GPRC+DGTRRT+RYDIDM+KCIYCG CQEACPVDAIVE
Sbjct: 61  ERCIACKLCEAICPAQAITIEAGPRCNDGTRRTIRYDIDMVKCIYCGFCQEACPVDAIVE 120

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEFATE R+ELYYDKE+LLNNGDRWE EI RNI+ DSPYR
Sbjct: 121 GPNFEFATEMREELYYDKEKLLNNGDRWEREIARNILIDSPYR 163


>gi|307109800|gb|EFN58037.1| hypothetical protein CHLNCDRAFT_20716 [Chlorella variabilis]
          Length = 169

 Score =  178 bits (451), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 108/161 (67%), Positives = 126/161 (78%), Gaps = 1/161 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           +   + + LFL E      L L+ FF+   TINYPFEKG  SPRFRGEH LRRYP GEER
Sbjct: 10  VLDESANTLFLTELWRGLALTLKVFFERPVTINYPFEKGPLSPRFRGEHVLRRYPTGEER 69

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCEAICPAQAITIE+  R  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGP
Sbjct: 70  CIACKLCEAICPAQAITIETEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 128

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           NFE++T TR+EL YDK++LL NGDRWE E+ +N+ +++ YR
Sbjct: 129 NFEYSTGTREELLYDKQKLLANGDRWEVEVEKNLRSEAMYR 169


>gi|295659241|ref|XP_002790179.1| NADH-quinone oxidoreductase subunit I 2 [Paracoccidioides
           brasiliensis Pb01]
 gi|30351132|gb|AAP23044.1| ferredoxin-like iron-sulfur protein [Paracoccidioides brasiliensis]
 gi|226281884|gb|EEH37450.1| NADH-quinone oxidoreductase subunit I 2 [Paracoccidioides
           brasiliensis Pb01]
          Length = 229

 Score =  178 bits (451), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 103/160 (64%), Positives = 120/160 (75%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
                 +  + E +   ++ L  FF+   TI YPFEKG  SPRFRGEHALRRYP+GEERC
Sbjct: 71  LDKAGKYFLMTEMLRGMYVVLEQFFRPPYTIFYPFEKGPISPRFRGEHALRRYPSGEERC 130

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAITIE+  R  DG+RRT RYDIDM KCIYCG CQE+CPVDAIVE PN
Sbjct: 131 IACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQESCPVDAIVESPN 189

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            E+ATETR+EL Y+KE+LL NGD+WE E+      D+PYR
Sbjct: 190 AEYATETREELLYNKEKLLANGDKWEPELAAAARADAPYR 229


>gi|159488755|ref|XP_001702368.1| NADH:ubiquinone oxidoreductase subunit 8 [Chlamydomonas
           reinhardtii]
 gi|34328786|gb|AAQ63697.1| NADH:ubiquinone oxidoreductase subunit 8 [Chlamydomonas
           reinhardtii]
 gi|158271162|gb|EDO96988.1| NADH:ubiquinone oxidoreductase subunit 8 [Chlamydomonas
           reinhardtii]
          Length = 231

 Score =  178 bits (451), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 111/161 (68%), Positives = 124/161 (77%), Gaps = 1/161 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           +   + S L L +        L  FF  K TI YPFEKG  SPRFRGEHALRRYP GEER
Sbjct: 72  VLDDSASMLLLTDVWRGMAYTLGAFFDKKVTIMYPFEKGQLSPRFRGEHALRRYPTGEER 131

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCEAICPAQAITIE+  R  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGP
Sbjct: 132 CIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 190

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           NFEF+TETR+EL YDK++LL NGD+WE+EI  N+ T+S YR
Sbjct: 191 NFEFSTETREELLYDKQKLLENGDKWETEIATNLRTESLYR 231


>gi|242013397|ref|XP_002427394.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, putative [Pediculus
           humanus corporis]
 gi|212511768|gb|EEB14656.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, putative [Pediculus
           humanus corporis]
          Length = 204

 Score =  178 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 108/161 (67%), Positives = 121/161 (75%), Gaps = 1/161 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           I    V  + L EF+    +     FK   TINYPFEKG  SPRFRGEHALRRYP+GEER
Sbjct: 45  ITDDFVKKVLLHEFLQGLSIVFGTTFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEER 104

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCEAICPAQAITIE+  R   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGP
Sbjct: 105 CIACKLCEAICPAQAITIEAEERSD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 163

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           NFE++T T +EL Y+KE+LL+NGD+WE EI  NI  D  YR
Sbjct: 164 NFEYSTFTHEELLYNKEKLLDNGDKWEVEIAANIEADHLYR 204


>gi|266659|sp|P29921|NQO9_PARDE RecName: Full=NADH-quinone oxidoreductase subunit 9; AltName:
           Full=NADH dehydrogenase I subunit 9; AltName: Full=NDH-1
           subunit 9
 gi|150609|gb|AAA25593.1| NADH dehydrogenase [Paracoccus denitrificans]
          Length = 163

 Score =  178 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 111/160 (69%), Positives = 130/160 (81%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           F     +  + +F+  F L +RYF   K T+NYP EKG  SPRFRGEHALRRYPNGEERC
Sbjct: 5   FARATKYFLMWDFIKGFGLGMRYFVSPKPTLNYPHEKGPLSPRFRGEHALRRYPNGEERC 64

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEA+CPAQAITI++  R  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGPN
Sbjct: 65  IACKLCEAVCPAQAITIDAE-RREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 123

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FE+ATETR+EL+YDK++LL NG+RWE+EI RN+  D+PYR
Sbjct: 124 FEYATETREELFYDKQKLLANGERWEAEIARNLQLDAPYR 163


>gi|190348547|gb|EDK41017.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
           6260]
          Length = 233

 Score =  178 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 106/160 (66%), Positives = 122/160 (76%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
                 F FL E     ++C+  FF+A  TI YPFEKG  SPRFRGEHALRRYP+GEERC
Sbjct: 75  LSKATKFFFLSEIARGMYICMEMFFRAPYTIYYPFEKGPISPRFRGEHALRRYPSGEERC 134

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAITIE+  R   G+RRT +YDIDM KCIYCG CQE+CPVDAIVE PN
Sbjct: 135 IACKLCEAICPAQAITIEAEERAD-GSRRTYKYDIDMTKCIYCGYCQESCPVDAIVESPN 193

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            E+ATETR+EL Y+KE+LL NGD+WE E+   I  D+PYR
Sbjct: 194 VEYATETREELLYNKEKLLENGDKWEQELQYCIDADAPYR 233


>gi|91789108|ref|YP_550060.1| NADH dehydrogenase subunit I [Polaromonas sp. JS666]
 gi|123164661|sp|Q127Y0|NUOI_POLSJ RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|91698333|gb|ABE45162.1| NADH dehydrogenase subunit I [Polaromonas sp. JS666]
          Length = 165

 Score =  178 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 93/159 (58%), Positives = 108/159 (67%), Gaps = 1/159 (0%)

Query: 5   RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64
           +  VS   L E      L  +Y F  K T+ +P EK   SPRFRG HALRRY NGEERCI
Sbjct: 8   KDFVSSFMLTELFKGMALTGKYMFSRKITVQFPEEKTPLSPRFRGLHALRRYDNGEERCI 67

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           ACKLCEA+CPA AITIES  R   G+RRT RYDID+ KCI+CG C+EACPVDAIVE   F
Sbjct: 68  ACKLCEAVCPALAITIESEVRDD-GSRRTSRYDIDLTKCIFCGFCEEACPVDAIVETHIF 126

Query: 125 EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           E+  E R +LY+ KE LL  GDR+E+EI  N   D+ YR
Sbjct: 127 EYHGEKRGDLYFTKEMLLAVGDRYEAEIAANKAADAKYR 165


>gi|241679736|ref|XP_002400836.1| NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit, putative
           [Ixodes scapularis]
 gi|215504281|gb|EEC13775.1| NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit, putative
           [Ixodes scapularis]
          Length = 210

 Score =  178 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 106/159 (66%), Positives = 120/159 (75%), Gaps = 1/159 (0%)

Query: 5   RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64
                 +F+ E +    +     FK   TINYPFEKG  SPRFRGEHALRRYP+GEERCI
Sbjct: 53  DKAAQMIFITEILRGLAVVTAQIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEERCI 112

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           ACKLCEAICPAQAITIE+  R   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNF
Sbjct: 113 ACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNF 171

Query: 125 EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           E++TET +EL Y+KE+LL+NGD+WE EI  NI  D  YR
Sbjct: 172 EYSTETHEELLYNKEKLLDNGDKWEPEIAANIQADYLYR 210


>gi|268576410|ref|XP_002643185.1| Hypothetical protein CBG24154 [Caenorhabditis briggsae]
 gi|187040443|emb|CAP20828.1| hypothetical protein CBG_24154 [Caenorhabditis briggsae AF16]
          Length = 212

 Score =  178 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 105/160 (65%), Positives = 120/160 (75%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
               +  +F  E    F + L + F    TINYPFEKG  S RFRGEHALRRYP+GEERC
Sbjct: 54  LNYGLHTVFFTELFRGFGVMLGHVFMEPATINYPFEKGPLSSRFRGEHALRRYPSGEERC 113

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAITIE+  R   G+RRT RYDIDM KCIYCGLCQEACPVDAIVEGPN
Sbjct: 114 IACKLCEAICPAQAITIEAETRPD-GSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGPN 172

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FE++TET +EL Y+KE+LL NGDRWE E+  N+  +  YR
Sbjct: 173 FEYSTETHEELLYNKEKLLLNGDRWEPELASNLQAEYLYR 212


>gi|308463017|ref|XP_003093787.1| hypothetical protein CRE_24782 [Caenorhabditis remanei]
 gi|308249393|gb|EFO93345.1| hypothetical protein CRE_24782 [Caenorhabditis remanei]
          Length = 212

 Score =  178 bits (451), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 105/160 (65%), Positives = 120/160 (75%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
               +  +F  E    F + L + F    TINYPFEKG  S RFRGEHALRRYP+GEERC
Sbjct: 54  LNYGLHTVFFTELFRGFGVMLGHVFMEPATINYPFEKGPLSSRFRGEHALRRYPSGEERC 113

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAITIE+  R   G+RRT RYDIDM KCIYCGLCQEACPVDAIVEGPN
Sbjct: 114 IACKLCEAICPAQAITIEAETRPD-GSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGPN 172

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FE++TET +EL Y+KE+LL NGDRWE E+  N+  +  YR
Sbjct: 173 FEYSTETHEELLYNKEKLLLNGDRWEPELASNLQAEYLYR 212


>gi|308152250|emb|CBI83544.1| NUIM (TYKY) subunit of mitochondrial NADH:ubiquinone oxidoreductase
           (complex I) [Pichia pastoris]
 gi|328353143|emb|CCA39541.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8 [Pichia pastoris CBS
           7435]
          Length = 222

 Score =  177 bits (450), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 102/160 (63%), Positives = 120/160 (75%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
                 +  L E     ++ L  +F+A  TI YPFEKG  SPRFRGEHALRRYP+GEERC
Sbjct: 64  LSKATKWYLLSEIFRGLYITLEMYFRAPYTIYYPFEKGPVSPRFRGEHALRRYPSGEERC 123

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEA+CPAQAITIE+  R   G+RRT +YDIDM KCIYCG CQE+CPVDAIVE PN
Sbjct: 124 IACKLCEAVCPAQAITIEAEERID-GSRRTYKYDIDMTKCIYCGYCQESCPVDAIVETPN 182

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            E+ATETR+EL Y+KE+LL NGD+WE EI   +  D+PYR
Sbjct: 183 VEYATETREELLYNKEKLLANGDKWEQEIQYALDADAPYR 222


>gi|146414379|ref|XP_001483160.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
           6260]
          Length = 233

 Score =  177 bits (450), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 106/160 (66%), Positives = 121/160 (75%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
                 F FL E     ++C+  FF+A  TI YPFEKG  SPRFRGEHALRRYP+GEERC
Sbjct: 75  LSKATKFFFLSEIARGMYICMEMFFRAPYTIYYPFEKGPISPRFRGEHALRRYPSGEERC 134

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAITIE+  R   G RRT +YDIDM KCIYCG CQE+CPVDAIVE PN
Sbjct: 135 IACKLCEAICPAQAITIEAEERAD-GLRRTYKYDIDMTKCIYCGYCQESCPVDAIVESPN 193

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            E+ATETR+EL Y+KE+LL NGD+WE E+   I  D+PYR
Sbjct: 194 VEYATETREELLYNKEKLLENGDKWEQELQYCIDADAPYR 233


>gi|296444802|ref|ZP_06886765.1| NADH-quinone oxidoreductase, chain I [Methylosinus trichosporium
           OB3b]
 gi|296257750|gb|EFH04814.1| NADH-quinone oxidoreductase, chain I [Methylosinus trichosporium
           OB3b]
          Length = 162

 Score =  177 bits (449), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 124/163 (76%), Positives = 134/163 (82%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M+        LFL EF+ AFFL + YFFK K T+NYP EK   SPRFRGEHALRRYPNGE
Sbjct: 1   MK-LDQAAKSLFLTEFIAAFFLSMHYFFKPKATLNYPHEKNPISPRFRGEHALRRYPNGE 59

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE+GPR +DGTRRT RYDIDM+KCIYCG CQEACPVDAIVE
Sbjct: 60  ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGFCQEACPVDAIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPN EFA ETR+ELYY+K+RLL NG RWE EI RNI  DSPYR
Sbjct: 120 GPNQEFAVETREELYYNKDRLLENGARWEREIARNIAMDSPYR 162


>gi|315499798|ref|YP_004088601.1| NADH-quinone oxidoreductase, chain i [Asticcacaulis excentricus CB
           48]
 gi|315417810|gb|ADU14450.1| NADH-quinone oxidoreductase, chain I [Asticcacaulis excentricus CB
           48]
          Length = 163

 Score =  177 bits (449), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 120/160 (75%), Positives = 131/160 (81%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
                    L +FVGA  L ++Y FK K TINYPFEKG  SPRFRGEHALRRYPNGEERC
Sbjct: 5   LVQAAKGALLLDFVGATGLAVKYMFKPKKTINYPFEKGPISPRFRGEHALRRYPNGEERC 64

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAITIE+ PR  DG+RRT RYDIDM+KCIYCGLCQEACPVDAIVEGPN
Sbjct: 65  IACKLCEAICPAQAITIEAEPR-EDGSRRTTRYDIDMVKCIYCGLCQEACPVDAIVEGPN 123

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FEFAT+TR+ELYYDK +LL NGDRWE EI R +  D+PYR
Sbjct: 124 FEFATDTREELYYDKSKLLANGDRWEREIARALELDAPYR 163


>gi|312072386|ref|XP_003139042.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Loa loa]
 gi|307765791|gb|EFO25025.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Loa loa]
          Length = 206

 Score =  177 bits (449), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 106/160 (66%), Positives = 125/160 (78%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           FR  + ++F+ E V    + + ++F    TINYPFEKG  S RFRGEHALRRYP+GEERC
Sbjct: 48  FRRAMHYMFMTELVRGMGIIVGHYFMEPATINYPFEKGPLSSRFRGEHALRRYPSGEERC 107

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAITIE+  R   G+RRT RYDIDM KCIYCGLCQEACPVDAIVEGPN
Sbjct: 108 IACKLCEAICPAQAITIEAEARPD-GSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGPN 166

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FE++TET +EL Y+KE+LL NGDRWE E+  N+  +  YR
Sbjct: 167 FEYSTETHEELLYNKEKLLLNGDRWEPELAANLQAEYLYR 206


>gi|198433064|ref|XP_002131912.1| PREDICTED: similar to NADH dehydrogenase [ubiquinone] iron-sulfur
           protein 8, mitochondrial precursor (NADH-ubiquinone
           oxidoreductase 23 kDa subunit) (Complex I-23kD)
           (CI-23kD) (TYKY subunit) [Ciona intestinalis]
          Length = 208

 Score =  177 bits (449), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 107/162 (66%), Positives = 123/162 (75%), Gaps = 1/162 (0%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
            I   N + +F  E +  F + L        TINYPFEKG  SPRFRGEHALRRYP+GEE
Sbjct: 48  NIVDTNANAIFATELLRGFGMVLAKSMSEPATINYPFEKGPLSPRFRGEHALRRYPSGEE 107

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLCEAICPAQAITIE+  R   G+RRT RYDIDM KCIYCG CQEACPVDAIVEG
Sbjct: 108 RCIACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 166

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           PNFE++T+T +EL Y+KE+LL+NGD+WE+EI  NI  D  YR
Sbjct: 167 PNFEYSTDTHEELLYNKEKLLDNGDKWETEIAANIEADYLYR 208


>gi|115389268|ref|XP_001212139.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           precursor [Aspergillus terreus NIH2624]
 gi|114194535|gb|EAU36235.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           precursor [Aspergillus terreus NIH2624]
          Length = 226

 Score =  177 bits (449), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 104/160 (65%), Positives = 117/160 (73%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
                 +  L E     ++ L  FF+   TI YPFEKG  SPRFRGEHALRRYP GEERC
Sbjct: 68  LDKATKYFLLAEMFRGMYVVLEQFFRPPYTIFYPFEKGPISPRFRGEHALRRYPTGEERC 127

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAITIE+  R  DG+RRT RYDIDM KCIYCG CQE+CPVDAIVE  N
Sbjct: 128 IACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGYCQESCPVDAIVETSN 186

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            E+ATETR+EL Y+KE+LL NGD+WE EI      D+PYR
Sbjct: 187 AEYATETREELLYNKEKLLANGDKWEPEIAAAARADAPYR 226


>gi|254455959|ref|ZP_05069388.1| NADH dehydrogenase i chain i [Candidatus Pelagibacter sp. HTCC7211]
 gi|207082961|gb|EDZ60387.1| NADH dehydrogenase i chain i [Candidatus Pelagibacter sp. HTCC7211]
          Length = 161

 Score =  177 bits (449), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 111/163 (68%), Positives = 134/163 (82%), Gaps = 2/163 (1%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M+        +F+ +F+G   + ++  FK+K TINYPFEKG  SPRFRGEHALRRYPNGE
Sbjct: 1   MK-LSRFFKTIFMTDFIGGLVIAIKELFKSKKTINYPFEKGKISPRFRGEHALRRYPNGE 59

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPAQAITIES  R  DG+R+T RYDIDM+KCIYCGLC+E+CPVDAIV+
Sbjct: 60  ERCIACKLCEAVCPAQAITIESAAR-EDGSRKTTRYDIDMMKCIYCGLCEESCPVDAIVQ 118

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEF+TETR+ELYY KE+LL+NGDRWE+ +  NI  D+PYR
Sbjct: 119 GPNFEFSTETREELYYTKEKLLDNGDRWENVLAANIKADNPYR 161


>gi|17555194|ref|NP_498595.1| hypothetical protein T20H4.5 [Caenorhabditis elegans]
 gi|3929363|sp|Q22619|NDUS8_CAEEL RecName: Full=Probable NADH dehydrogenase [ubiquinone] iron-sulfur
           protein 8, mitochondrial; AltName: Full=Complex I-23kD;
           Short=CI-23kD; AltName: Full=NADH-ubiquinone
           oxidoreductase 23 kDa subunit; Flags: Precursor
 gi|4972961|gb|AAD34863.1|AF140272_1 NADH oxidoreductase complex I 23.8 kDa subunit [Caenorhabditis
           elegans]
 gi|459011|gb|AAA50662.1| Hypothetical protein T20H4.5 [Caenorhabditis elegans]
          Length = 212

 Score =  177 bits (449), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 105/160 (65%), Positives = 120/160 (75%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
               +  +F  E    F + L + F    TINYPFEKG  S RFRGEHALRRYP+GEERC
Sbjct: 54  LNYGLHNVFFTELFRGFGVMLGHVFMEPATINYPFEKGPLSSRFRGEHALRRYPSGEERC 113

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAITIE+  R   G+RRT RYDIDM KCIYCGLCQEACPVDAIVEGPN
Sbjct: 114 IACKLCEAICPAQAITIEAETRPD-GSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGPN 172

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FE++TET +EL Y+KE+LL NGDRWE E+  N+  +  YR
Sbjct: 173 FEYSTETHEELLYNKEKLLLNGDRWEPELASNLQAEYLYR 212


>gi|330813990|ref|YP_004358229.1| NADH-ubiquinone oxidoreductase chain I [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327487085|gb|AEA81490.1| NADH-ubiquinone oxidoreductase chain I [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 161

 Score =  177 bits (449), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 114/163 (69%), Positives = 136/163 (83%), Gaps = 2/163 (1%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M+ F   +  +FL EFV A +L ++Y FK K TINYPFEKG  SPRFRGEHALRRYPNGE
Sbjct: 1   MK-FDRIIKTIFLVEFVKALYLAIKYMFKDKATINYPFEKGPLSPRFRGEHALRRYPNGE 59

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPAQAI+I++  +  DG+R+T RYDIDM+KCIYCGLCQEACPVDAIV+
Sbjct: 60  ERCIACKLCEAVCPAQAISIDAELK-EDGSRKTTRYDIDMVKCIYCGLCQEACPVDAIVQ 118

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEF+TETR+ELYY+K++L++NGDRWE EI  NI  D  YR
Sbjct: 119 GPNFEFSTETREELYYNKDKLMDNGDRWEKEIAHNIKKDKAYR 161


>gi|254571471|ref|XP_002492845.1| hypothetical protein [Pichia pastoris GS115]
 gi|238032643|emb|CAY70666.1| Hypothetical protein PAS_chr3_0619 [Pichia pastoris GS115]
          Length = 211

 Score =  177 bits (448), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 102/159 (64%), Positives = 121/159 (76%), Gaps = 1/159 (0%)

Query: 5   RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64
           +    +  L E     ++ L  +F+A  TI YPFEKG  SPRFRGEHALRRYP+GEERCI
Sbjct: 54  KDATKWYLLSEIFRGLYITLEMYFRAPYTIYYPFEKGPVSPRFRGEHALRRYPSGEERCI 113

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           ACKLCEA+CPAQAITIE+  R   G+RRT +YDIDM KCIYCG CQE+CPVDAIVE PN 
Sbjct: 114 ACKLCEAVCPAQAITIEAEERID-GSRRTYKYDIDMTKCIYCGYCQESCPVDAIVETPNV 172

Query: 125 EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           E+ATETR+EL Y+KE+LL NGD+WE EI   +  D+PYR
Sbjct: 173 EYATETREELLYNKEKLLANGDKWEQEIQYALDADAPYR 211


>gi|70991122|ref|XP_750410.1| NADH-quinone oxidoreductase, 23 kDa subunit [Aspergillus fumigatus
           Af293]
 gi|66848042|gb|EAL88372.1| NADH-quinone oxidoreductase, 23 kDa subunit, putative [Aspergillus
           fumigatus Af293]
 gi|159130884|gb|EDP55997.1| NADH-quinone oxidoreductase, 23 kDa subunit, putative [Aspergillus
           fumigatus A1163]
          Length = 228

 Score =  177 bits (448), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 103/160 (64%), Positives = 117/160 (73%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
                 +  + E     ++ L  FF+   TI YPFEKG  SPRFRGEHALRRYP GEERC
Sbjct: 70  LDKASKYFLMAELFRGMYVVLEQFFRPPYTIYYPFEKGPISPRFRGEHALRRYPTGEERC 129

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAITIE+  R  DG+RRT RYDIDM KCIYCG CQE+CPVDAIVE  N
Sbjct: 130 IACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGYCQESCPVDAIVETSN 188

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            E+ATETR+EL Y+KE+LL NGD+WE EI      D+PYR
Sbjct: 189 AEYATETREELLYNKEKLLANGDKWEPEIAAAARADAPYR 228


>gi|34496404|ref|NP_900619.1| NADH dehydrogenase subunit I [Chromobacterium violaceum ATCC 12472]
 gi|81656630|sp|Q7NZH3|NUOI_CHRVO RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|34102257|gb|AAQ58623.1| NADH-ubiquinone oxidoreductase, chain I [Chromobacterium violaceum
           ATCC 12472]
          Length = 162

 Score =  176 bits (447), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 94/163 (57%), Positives = 108/163 (66%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   R       L E V    +  RYFF  K T+ +P EK   SPRFRG HA RRY NGE
Sbjct: 1   MNSIRNFFKTFLLVELVKGLMVTGRYFFARKITVQFPEEKTPISPRFRGLHAQRRYANGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AI+IES  R  DGTRRT RYDID+ KCI+CG C+EACPVDAIVE
Sbjct: 61  ERCIACKLCEAVCPAMAISIESEQR-EDGTRRTSRYDIDLTKCIFCGFCEEACPVDAIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
              FE+  E R +LYY K  LL  GD++E+EI  N   D+ YR
Sbjct: 120 THIFEYHGEKRGDLYYTKPMLLAIGDKYEAEIAANKAADAKYR 162


>gi|238878682|gb|EEQ42320.1| NADH-ubiquinone oxidoreductase subunit 8 [Candida albicans WO-1]
          Length = 244

 Score =  176 bits (447), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 105/160 (65%), Positives = 122/160 (76%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
                 FLFL E     ++CL  +F+A  TI YPFEKG  SPRFRGEHALRRYP+GEERC
Sbjct: 86  LSKATKFLFLSEIARGMYICLEMYFRAPYTIYYPFEKGPISPRFRGEHALRRYPSGEERC 145

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAITIE+  R   G+RRT +YDIDM KCIYCG CQE+CPVDAIVE PN
Sbjct: 146 IACKLCEAICPAQAITIEAEERID-GSRRTYKYDIDMTKCIYCGYCQESCPVDAIVETPN 204

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            E++T TR+EL Y+KE+LL NGD+WE E+   I  D+PYR
Sbjct: 205 VEYSTATREELLYNKEKLLENGDKWEQELQYCIDADAPYR 244


>gi|68464733|ref|XP_723444.1| potential mitochondrial Complex I, NUIM_23kd subunit [Candida
           albicans SC5314]
 gi|68465112|ref|XP_723255.1| potential mitochondrial Complex I, NUIM_23kd subunit [Candida
           albicans SC5314]
 gi|46445282|gb|EAL04551.1| potential mitochondrial Complex I, NUIM_23kd subunit [Candida
           albicans SC5314]
 gi|46445478|gb|EAL04746.1| potential mitochondrial Complex I, NUIM_23kd subunit [Candida
           albicans SC5314]
          Length = 246

 Score =  176 bits (447), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 105/160 (65%), Positives = 122/160 (76%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
                 FLFL E     ++CL  +F+A  TI YPFEKG  SPRFRGEHALRRYP+GEERC
Sbjct: 88  LSKATKFLFLSEIARGMYICLEMYFRAPYTIYYPFEKGPISPRFRGEHALRRYPSGEERC 147

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAITIE+  R   G+RRT +YDIDM KCIYCG CQE+CPVDAIVE PN
Sbjct: 148 IACKLCEAICPAQAITIEAEERID-GSRRTYKYDIDMTKCIYCGYCQESCPVDAIVETPN 206

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            E++T TR+EL Y+KE+LL NGD+WE E+   I  D+PYR
Sbjct: 207 VEYSTATREELLYNKEKLLENGDKWEQELQYCIDADAPYR 246


>gi|296136698|ref|YP_003643940.1| hypothetical protein Tint_2260 [Thiomonas intermedia K12]
 gi|294340853|emb|CAZ89248.1| NADH-quinone oxidoreductase subunit I (NADH dehydrogenase I subunit
           I) (NDH-1 subunit I) [Thiomonas sp. 3As]
 gi|295796820|gb|ADG31610.1| hypothetical protein Tint_2260 [Thiomonas intermedia K12]
          Length = 162

 Score =  176 bits (447), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 96/163 (58%), Positives = 112/163 (68%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   R   +  FL E      L  +Y FK+K T+ YP EK   SPRFRG HALRRYPNGE
Sbjct: 1   MAALRDTFNSFFLVELFKGLALTGKYAFKSKITVQYPEEKTPLSPRFRGLHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIES  R   GTRRT RYDID+ KCI+CGLC+E+CPVD+IVE
Sbjct: 61  ERCIACKLCEAVCPALAITIESEQRDD-GTRRTTRYDIDLTKCIFCGLCEESCPVDSIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
              FE+  E R +LY+ KE LL  GDR+E +I      D+PYR
Sbjct: 120 TSIFEYHGEKRGDLYFTKEMLLAVGDRYEKDIAATKEADAPYR 162


>gi|119496461|ref|XP_001265004.1| NADH-quinone oxidoreductase, 23 kDa subunit, putative [Neosartorya
           fischeri NRRL 181]
 gi|119413166|gb|EAW23107.1| NADH-quinone oxidoreductase, 23 kDa subunit, putative [Neosartorya
           fischeri NRRL 181]
          Length = 228

 Score =  176 bits (447), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 103/160 (64%), Positives = 117/160 (73%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
                 +  + E     ++ L  FF+   TI YPFEKG  SPRFRGEHALRRYP GEERC
Sbjct: 70  LDKASKYFLMAELFRGMYVVLEQFFRPPYTIFYPFEKGPISPRFRGEHALRRYPTGEERC 129

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAITIE+  R  DG+RRT RYDIDM KCIYCG CQE+CPVDAIVE  N
Sbjct: 130 IACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGYCQESCPVDAIVETSN 188

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            E+ATETR+EL Y+KE+LL NGD+WE EI      D+PYR
Sbjct: 189 AEYATETREELLYNKEKLLANGDKWEPEIAAAARADAPYR 228


>gi|197105259|ref|YP_002130636.1| NADH dehydrogenase I, I subunit [Phenylobacterium zucineum HLK1]
 gi|196478679|gb|ACG78207.1| NADH dehydrogenase I, I subunit [Phenylobacterium zucineum HLK1]
          Length = 163

 Score =  176 bits (447), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 112/158 (70%), Positives = 128/158 (81%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
             V    L +F GAF L +++  + K T+ YP E+   SPRFRGEHALRRYPNGEERCIA
Sbjct: 7   QAVKGAALLDFAGAFGLAMKHMARPKKTVQYPHERNPQSPRFRGEHALRRYPNGEERCIA 66

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEA+CPAQAITIE+ PR   G+RRT RYDIDM+KCIYCGLCQEACPVDAIVEGPN E
Sbjct: 67  CKLCEAVCPAQAITIEAEPRAD-GSRRTTRYDIDMVKCIYCGLCQEACPVDAIVEGPNLE 125

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FA ETR+ELYYDKERLL+NGDRWE EI +N+  D+PYR
Sbjct: 126 FAVETREELYYDKERLLDNGDRWEREIAKNLELDAPYR 163


>gi|296808641|ref|XP_002844659.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Arthroderma otae CBS
           113480]
 gi|238844142|gb|EEQ33804.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Arthroderma otae CBS
           113480]
          Length = 231

 Score =  176 bits (447), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 102/160 (63%), Positives = 118/160 (73%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
                 +  + E     ++ L  FF+   TI YPFEKG  SPRFRGEHALRRYP+GEERC
Sbjct: 73  LDSATKYFLMAELFRGMYVVLEQFFRPPYTIFYPFEKGPISPRFRGEHALRRYPSGEERC 132

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAITIE+  R   G+RRT RYDIDM KCIYCG CQE+CPVDAIVE PN
Sbjct: 133 IACKLCEAICPAQAITIEAEERVD-GSRRTTRYDIDMTKCIYCGFCQESCPVDAIVESPN 191

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            E+ATETR+EL Y+KE+LL NGD+WE E+      D+PYR
Sbjct: 192 AEYATETREELLYNKEKLLANGDKWEPELAAAARADAPYR 231


>gi|119187897|ref|XP_001244555.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           precursor [Coccidioides immitis RS]
          Length = 232

 Score =  176 bits (447), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 105/162 (64%), Positives = 120/162 (74%), Gaps = 1/162 (0%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
                   +  + E     ++ L  FF+   TI YPFEKG  SPRFRGEHALRRYP+GEE
Sbjct: 72  STLDKAGKYFLMTELFRGMYVVLEQFFRPPYTIYYPFEKGPISPRFRGEHALRRYPSGEE 131

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLCEAICPAQAITIE+  R  DG+RRT RYDIDM KCIYCG CQE+CPVDAIVE 
Sbjct: 132 RCIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQESCPVDAIVES 190

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           PN E+ATETR+EL Y+KE+LL NGD+WESEI      D+PYR
Sbjct: 191 PNAEYATETREELLYNKEKLLANGDKWESEIAAAARADAPYR 232


>gi|260574770|ref|ZP_05842773.1| NADH-quinone oxidoreductase, chain I [Rhodobacter sp. SW2]
 gi|259023187|gb|EEW26480.1| NADH-quinone oxidoreductase, chain I [Rhodobacter sp. SW2]
          Length = 164

 Score =  176 bits (447), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 110/158 (69%), Positives = 129/158 (81%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
             V +  + +F+  F L ++YF   K T+NYP EKG  SPRFRGEHALRRYPNGEERCIA
Sbjct: 8   RAVKYFLMWDFIKGFGLGMKYFLAPKDTLNYPHEKGKLSPRFRGEHALRRYPNGEERCIA 67

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEAICPAQAITI++ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE
Sbjct: 68  CKLCEAICPAQAITIDAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           F+TETR+EL+Y+KE+LL NG +WE+EI RN+  D+PYR
Sbjct: 127 FSTETREELFYNKEKLLANGAQWEAEIARNLEMDAPYR 164


>gi|327308414|ref|XP_003238898.1| ferredoxin-like iron-sulfur protein [Trichophyton rubrum CBS
           118892]
 gi|326459154|gb|EGD84607.1| ferredoxin-like iron-sulfur protein [Trichophyton rubrum CBS
           118892]
          Length = 227

 Score =  176 bits (447), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 102/160 (63%), Positives = 118/160 (73%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
                 +  + E     ++ L  FF+   TI YPFEKG  SPRFRGEHALRRYP+GEERC
Sbjct: 69  LDSATKYFLMAELFRGMYVVLEQFFRPPYTIFYPFEKGPISPRFRGEHALRRYPSGEERC 128

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAITIE+  R   G+RRT RYDIDM KCIYCG CQE+CPVDAIVE PN
Sbjct: 129 IACKLCEAICPAQAITIEAEERVD-GSRRTTRYDIDMTKCIYCGFCQESCPVDAIVESPN 187

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            E+ATETR+EL Y+KE+LL NGD+WE E+      D+PYR
Sbjct: 188 AEYATETREELLYNKEKLLANGDKWEPELAAAARADAPYR 227


>gi|209518507|ref|ZP_03267328.1| NADH-quinone oxidoreductase, chain I [Burkholderia sp. H160]
 gi|209501052|gb|EEA01087.1| NADH-quinone oxidoreductase, chain I [Burkholderia sp. H160]
          Length = 162

 Score =  176 bits (446), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 92/163 (56%), Positives = 110/163 (67%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   +      FL E +    L  RY F+ K T+ +P EK   SPRFRG HALRRY NGE
Sbjct: 1   MTAIQNFFKTFFLTELLKGLALTGRYAFQRKVTVQFPEEKTPISPRFRGLHALRRYENGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIES  R  + TRRT RYDID+ KCI+CG C+E+CPVD+IVE
Sbjct: 61  ERCIACKLCEAVCPALAITIESETRADN-TRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               E+  E R +LY+ KE LL  GDR+E+EI  N   D+PYR
Sbjct: 120 THILEYHGEKRGDLYFTKEMLLAVGDRYEAEIAANKAADAPYR 162


>gi|295676045|ref|YP_003604569.1| NADH-quinone oxidoreductase, chain I [Burkholderia sp. CCGE1002]
 gi|295435888|gb|ADG15058.1| NADH-quinone oxidoreductase, chain I [Burkholderia sp. CCGE1002]
          Length = 162

 Score =  176 bits (446), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 91/163 (55%), Positives = 110/163 (67%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   +      FL E +    L  RY F+ K T+ +P EK   SPRFRG HALRRY NGE
Sbjct: 1   MTAIQNFFKTFFLTELLKGLALTGRYTFQRKVTVQFPEEKTPISPRFRGLHALRRYENGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIES  R  + TRRT RYDID+ KCI+CG C+E+CPVD+IVE
Sbjct: 61  ERCIACKLCEAVCPALAITIESETRADN-TRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               E+  E R +LY+ KE LL  GDR+E++I  N   D+PYR
Sbjct: 120 THILEYHGEKRGDLYFTKEMLLAVGDRYEAQIAANKAADAPYR 162


>gi|315054381|ref|XP_003176565.1| NADH-ubiquinone oxidoreductase subunit [Arthroderma gypseum CBS
           118893]
 gi|311338411|gb|EFQ97613.1| NADH-ubiquinone oxidoreductase subunit [Arthroderma gypseum CBS
           118893]
          Length = 227

 Score =  176 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 102/160 (63%), Positives = 118/160 (73%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
                 +  + E     ++ L  FF+   TI YPFEKG  SPRFRGEHALRRYP+GEERC
Sbjct: 69  LDSATKYFLMAELFRGMYVVLEQFFRPPYTIFYPFEKGPISPRFRGEHALRRYPSGEERC 128

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAITIE+  R   G+RRT RYDIDM KCIYCG CQE+CPVDAIVE PN
Sbjct: 129 IACKLCEAICPAQAITIEAEERVD-GSRRTTRYDIDMTKCIYCGFCQESCPVDAIVESPN 187

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            E+ATETR+EL Y+KE+LL NGD+WE E+      D+PYR
Sbjct: 188 AEYATETREELLYNKEKLLANGDKWEPELAAAARADAPYR 227


>gi|303316716|ref|XP_003068360.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           precursor, putative [Coccidioides posadasii C735 delta
           SOWgp]
 gi|240108041|gb|EER26215.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           precursor, putative [Coccidioides posadasii C735 delta
           SOWgp]
 gi|320038169|gb|EFW20105.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Coccidioides
           posadasii str. Silveira]
          Length = 232

 Score =  176 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 105/162 (64%), Positives = 120/162 (74%), Gaps = 1/162 (0%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
                   +  + E     ++ L  FF+   TI YPFEKG  SPRFRGEHALRRYP+GEE
Sbjct: 72  STLDKAGKYFLMTELFRGMYVVLEQFFRPPYTIYYPFEKGPISPRFRGEHALRRYPSGEE 131

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLCEAICPAQAITIE+  R  DG+RRT RYDIDM KCIYCG CQE+CPVDAIVE 
Sbjct: 132 RCIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQESCPVDAIVES 190

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           PN E+ATETR+EL Y+KE+LL NGD+WESEI      D+PYR
Sbjct: 191 PNAEYATETREELLYNKEKLLANGDKWESEIAAAARADAPYR 232


>gi|315122717|ref|YP_004063206.1| NADH dehydrogenase subunit I [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313496119|gb|ADR52718.1| NADH dehydrogenase subunit I [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 159

 Score =  176 bits (446), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 147/157 (93%), Positives = 152/157 (96%)

Query: 7   NVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIAC 66
           NVSFLFLKEFV +FFLC+RYFFKAK TINYPFEKGS SPRFRGEHALRRYPNGEERCIAC
Sbjct: 3   NVSFLFLKEFVLSFFLCMRYFFKAKATINYPFEKGSVSPRFRGEHALRRYPNGEERCIAC 62

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
           KLCEA+CPAQAITIESGPR HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF
Sbjct: 63  KLCEAVCPAQAITIESGPRLHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 122

Query: 127 ATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           ATETR+ELYYDKERLL+NGDRWESEIVRNIV DSPYR
Sbjct: 123 ATETRKELYYDKERLLDNGDRWESEIVRNIVIDSPYR 159


>gi|71083590|ref|YP_266309.1| NADH dehydrogenase subunit I [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|91761989|ref|ZP_01263954.1| NADH dehydrogenase subunit I [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|115502537|sp|Q4FM83|NUOI_PELUB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|71062703|gb|AAZ21706.1| NADH Dehydrogenase I Chain I [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|91717791|gb|EAS84441.1| NADH dehydrogenase subunit I [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 161

 Score =  176 bits (445), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 110/163 (67%), Positives = 134/163 (82%), Gaps = 2/163 (1%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M+I       +FL +F+G   + ++  FK+K TINYPFEKG  SPRFRGEHALRRYPNGE
Sbjct: 1   MKI-SRIFKTIFLLDFLGGLNIAIKEIFKSKKTINYPFEKGKISPRFRGEHALRRYPNGE 59

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPAQAITIES  R   G+R+T RYDIDM+KCIYCGLC+E+CPVDAIV+
Sbjct: 60  ERCIACKLCEAVCPAQAITIESSERAD-GSRKTTRYDIDMMKCIYCGLCEESCPVDAIVQ 118

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEF+TETR+ELYY+KE+LL+NGDRWE+ +  NI  D+ +R
Sbjct: 119 GPNFEFSTETREELYYNKEKLLDNGDRWENVLAANIKADNSHR 161


>gi|163746211|ref|ZP_02153570.1| NADH dehydrogenase subunit I [Oceanibulbus indolifex HEL-45]
 gi|161380956|gb|EDQ05366.1| NADH dehydrogenase subunit I [Oceanibulbus indolifex HEL-45]
          Length = 164

 Score =  176 bits (445), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 118/158 (74%), Positives = 131/158 (82%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
               +  L ++  AF L +RYFF  KTTINYP EKG  SPRFRGEHALRRYPNGEERCIA
Sbjct: 8   RAAKYFLLADYAKAFMLGMRYFFAPKTTINYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEAICPAQAITI++  R  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE
Sbjct: 68  CKLCEAICPAQAITIDAEAR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           F+TETR+ELYYDK +LL+NGDRWESEI RN+  D+PYR
Sbjct: 127 FSTETREELYYDKAKLLDNGDRWESEIARNLEMDAPYR 164


>gi|114330933|ref|YP_747155.1| NADH dehydrogenase subunit I [Nitrosomonas eutropha C91]
 gi|122314151|sp|Q0AHJ2|NUOI_NITEC RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|114307947|gb|ABI59190.1| NADH dehydrogenase subunit I [Nitrosomonas eutropha C91]
          Length = 162

 Score =  176 bits (445), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 94/163 (57%), Positives = 111/163 (68%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   +  +    L E +    +  RY F  K T++YP EK   SPRFRG HALRRYPNGE
Sbjct: 1   MERIKRFLKSFLLFELLKGMKVTGRYLFAPKVTVHYPEEKTPQSPRFRGLHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIES  R   GTRRT RYDID+IKCI+CG C+EACPVDAIVE
Sbjct: 61  ERCIACKLCEAVCPALAITIESEQRDD-GTRRTTRYDIDLIKCIFCGFCEEACPVDAIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               E+  E R +L Y KE LL  GDR+E +I ++   D+PYR
Sbjct: 120 TRVLEYHGEVRGDLTYTKEMLLAVGDRYEEQIAKDRAADAPYR 162


>gi|302833042|ref|XP_002948085.1| NADH:ubiquinone oxidoreductase subunit 8 [Volvox carteri f.
           nagariensis]
 gi|300266887|gb|EFJ51073.1| NADH:ubiquinone oxidoreductase subunit 8 [Volvox carteri f.
           nagariensis]
          Length = 229

 Score =  176 bits (445), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 112/161 (69%), Positives = 123/161 (76%), Gaps = 1/161 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           +   +   L L E        L  FF  K TI YPFEKG  SPRFRGEHALRRYP GEER
Sbjct: 70  VLDDSAHMLLLTEVWRGMAYTLGAFFDKKVTIMYPFEKGQVSPRFRGEHALRRYPTGEER 129

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCEAICPAQAITIE+  R  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGP
Sbjct: 130 CIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 188

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           NFEF+TETR+EL YDK++LL NGDRWE+EI  N+ T+S YR
Sbjct: 189 NFEFSTETREELLYDKQKLLENGDRWETEIATNLRTESLYR 229


>gi|187923348|ref|YP_001894990.1| NADH dehydrogenase subunit I [Burkholderia phytofirmans PsJN]
 gi|187714542|gb|ACD15766.1| NADH-quinone oxidoreductase, chain I [Burkholderia phytofirmans
           PsJN]
          Length = 162

 Score =  176 bits (445), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 91/163 (55%), Positives = 110/163 (67%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   +      FL E +    L  RY F+ K T+ +P EK   SPRFRG HALRRY NGE
Sbjct: 1   MTAIQNFFKTFFLTELLKGLALTGRYTFQRKVTVQFPEEKTPISPRFRGLHALRRYENGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIES  R  + TRRT RYDID+ KCI+CG C+E+CPVD+IVE
Sbjct: 61  ERCIACKLCEAVCPALAITIESETRADN-TRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               E+  E R +LY+ K+ LL  GDR+E+EI  N   D+PYR
Sbjct: 120 THILEYHGEKRGDLYFTKDMLLAVGDRYEAEIAANKAADAPYR 162


>gi|319794660|ref|YP_004156300.1| NADH-quinone oxidoreductase, chain i [Variovorax paradoxus EPS]
 gi|315597123|gb|ADU38189.1| NADH-quinone oxidoreductase, chain I [Variovorax paradoxus EPS]
          Length = 181

 Score =  176 bits (445), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 87/160 (54%), Positives = 106/160 (66%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
            +  +    L E      +  +Y F  K T+ +P EK   SPRFRG HALRRY NGEERC
Sbjct: 23  LKDFLGSFMLFELFKGLAITGKYAFARKITVQFPEEKTPLSPRFRGLHALRRYENGEERC 82

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEA+CPA AITIES  R   G+RRT RYDID+ KCI+CG C+E+CPVD+IVE   
Sbjct: 83  IACKLCEAVCPALAITIESDVRDD-GSRRTTRYDIDLTKCIFCGFCEESCPVDSIVETHI 141

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FE+  E R +LY+ K+ LL  GDR+E EI  N   D+ YR
Sbjct: 142 FEYHGEKRGDLYFTKDMLLAVGDRYEKEIAANKAADAKYR 181


>gi|224824815|ref|ZP_03697922.1| NADH-quinone oxidoreductase, chain I [Lutiella nitroferrum 2002]
 gi|224603308|gb|EEG09484.1| NADH-quinone oxidoreductase, chain I [Lutiella nitroferrum 2002]
          Length = 162

 Score =  175 bits (444), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 94/163 (57%), Positives = 106/163 (65%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   R       L E V    L  R+FF  K T+ +P EK   SPRFRG HA RRY NGE
Sbjct: 1   MDTIRNFFKTFLLVELVQGLMLTGRHFFARKITVQFPEEKTPLSPRFRGLHAQRRYANGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIES  R   GTRRT RYDID+ KCI+CG C+EACPVDAIVE
Sbjct: 61  ERCIACKLCEAVCPAMAITIESEQRDD-GTRRTSRYDIDLTKCIFCGFCEEACPVDAIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
              FE+  E R +LYY K  LL  GD++ESEI      D+ YR
Sbjct: 120 THIFEYHGEKRGDLYYTKPMLLAIGDKYESEIAARKAADAKYR 162


>gi|71906596|ref|YP_284183.1| NADH dehydrogenase subunit I [Dechloromonas aromatica RCB]
 gi|115502525|sp|Q47HG8|NUOI_DECAR RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|71846217|gb|AAZ45713.1| NADH dehydrogenase subunit I [Dechloromonas aromatica RCB]
          Length = 162

 Score =  175 bits (444), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 95/163 (58%), Positives = 115/163 (70%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   +   + LFLKE +    +  +YFF  K T+ YP EK   S RFRG HALRRYPNGE
Sbjct: 1   MGSMKEIFNSLFLKELLKGMSVTGKYFFARKITVQYPEEKTPQSFRFRGLHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPA AITIE+ PR   G+RRT RYDID+ KCI+CG C+EACPVDA+VE
Sbjct: 61  ERCIACKLCEAICPALAITIEAEPRDD-GSRRTTRYDIDLTKCIFCGFCEEACPVDAVVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
              FE+  E R +LYY K+ LL NGDR+E +I ++   D+ YR
Sbjct: 120 TRIFEYHGEKRGDLYYTKQMLLANGDRYEDQIAKDRELDASYR 162


>gi|332526755|ref|ZP_08402857.1| NADH dehydrogenase subunit I [Rubrivivax benzoatilyticus JA2]
 gi|332111158|gb|EGJ11190.1| NADH dehydrogenase subunit I [Rubrivivax benzoatilyticus JA2]
          Length = 165

 Score =  175 bits (444), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 91/160 (56%), Positives = 107/160 (66%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
            +  +S   L E      L  R+F     TI YP EK   SPRFRG HALRRY NGEERC
Sbjct: 7   IKDVLSSFMLAEIFKGMALTGRHFLSKAITIQYPEEKTPLSPRFRGLHALRRYENGEERC 66

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEA+CPA AITIES  R   GTRRT RYDID+ KCI+CG C+E+CPVD+IVE   
Sbjct: 67  IACKLCEAVCPAMAITIESDVRAD-GTRRTTRYDIDLTKCIFCGFCEESCPVDSIVETHI 125

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FE+  E R +LY+ K+ LL  GDR+E E+  N   D+PYR
Sbjct: 126 FEYHGEKRGDLYFTKDMLLAVGDRYEKEVAANREADAPYR 165


>gi|114321111|ref|YP_742794.1| NADH dehydrogenase subunit I [Alkalilimnicola ehrlichii MLHE-1]
 gi|122311310|sp|Q0A783|NUOI_ALHEH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|114227505|gb|ABI57304.1| NADH dehydrogenase subunit I [Alkalilimnicola ehrlichii MLHE-1]
          Length = 163

 Score =  175 bits (444), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 93/163 (57%), Positives = 112/163 (68%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   R  V    L E +    L  ++F     T+ YP EK   SPRFRG HALRRYPNGE
Sbjct: 1   MTALRDYVKSFLLVELLQGLRLTGKHFLSRSVTLEYPEEKTPKSPRFRGMHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIE+GPR  DGTRRT  Y+IDM KCIYCG C+E+CPVD+IVE
Sbjct: 61  ERCIACKLCEAVCPALAITIEAGPREDDGTRRTTLYEIDMFKCIYCGFCEESCPVDSIVE 120

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               E+  E R+E  +DK RLL NGD++E++I  +   D+PYR
Sbjct: 121 TREHEYHMEHREERVFDKARLLANGDKYEAQIAADRAADAPYR 163


>gi|302383058|ref|YP_003818881.1| NADH-quinone oxidoreductase, chain I [Brevundimonas subvibrioides
           ATCC 15264]
 gi|302193686|gb|ADL01258.1| NADH-quinone oxidoreductase, chain I [Brevundimonas subvibrioides
           ATCC 15264]
          Length = 163

 Score =  175 bits (444), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 117/158 (74%), Positives = 128/158 (81%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
                  L + VGAF L +R FF+ K TINYPFE+   SPRFRGEHALRRY NGEERCIA
Sbjct: 7   QAAKGAMLIDMVGAFGLTMREFFRPKHTINYPFERNPQSPRFRGEHALRRYANGEERCIA 66

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEAICPAQAITIES PR   G+RRT RYDIDM+KCIYCGLCQEACPVDAIVEGPN E
Sbjct: 67  CKLCEAICPAQAITIESEPRSD-GSRRTTRYDIDMVKCIYCGLCQEACPVDAIVEGPNSE 125

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FATETR+EL YDK RLL+NGDRWE +I RN+  D+PYR
Sbjct: 126 FATETREELLYDKARLLDNGDRWERQIARNLELDAPYR 163


>gi|307730332|ref|YP_003907556.1| NADH-quinone oxidoreductase, chain I [Burkholderia sp. CCGE1003]
 gi|307584867|gb|ADN58265.1| NADH-quinone oxidoreductase, chain I [Burkholderia sp. CCGE1003]
          Length = 162

 Score =  175 bits (443), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 94/163 (57%), Positives = 110/163 (67%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   +      FL E V    L  RY F+ K T+ +P EK   SPRFRG HALRRY NGE
Sbjct: 1   MTAIQNFFKTFFLTELVKGLALTGRYTFQRKVTVQFPEEKTPISPRFRGLHALRRYENGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIES  R  D TRRT RYDID+ KCI+CG C+E+CPVD+IVE
Sbjct: 61  ERCIACKLCEAVCPALAITIESETR-EDNTRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               E+  E R +LY+ KE LL  GDR+E+EI  N   D+PYR
Sbjct: 120 THILEYHGEKRGDLYFTKEMLLAVGDRYEAEIAANKAADAPYR 162


>gi|91782620|ref|YP_557826.1| NADH dehydrogenase subunit I [Burkholderia xenovorans LB400]
 gi|296160637|ref|ZP_06843452.1| NADH-quinone oxidoreductase, chain I [Burkholderia sp. Ch1-1]
 gi|115502523|sp|Q142G5|NUOI_BURXL RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|91686574|gb|ABE29774.1| NADH dehydrogenase subunit I [Burkholderia xenovorans LB400]
 gi|295889163|gb|EFG68966.1| NADH-quinone oxidoreductase, chain I [Burkholderia sp. Ch1-1]
          Length = 162

 Score =  175 bits (443), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 91/163 (55%), Positives = 110/163 (67%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   +      FL E +    L  RY F+ K T+ +P EK   SPRFRG HALRRY NGE
Sbjct: 1   MTAIQNFFKTFFLTELLKGLALTGRYTFQRKVTVQFPEEKTPISPRFRGLHALRRYENGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIES  R  + TRRT RYDID+ KCI+CG C+E+CPVD+IVE
Sbjct: 61  ERCIACKLCEAVCPALAITIESETRADN-TRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               E+  E R +LY+ K+ LL  GDR+E+EI  N   D+PYR
Sbjct: 120 THILEYHGEKRGDLYFTKDMLLAVGDRYETEIAANKAADAPYR 162


>gi|186476756|ref|YP_001858226.1| NADH dehydrogenase subunit I [Burkholderia phymatum STM815]
 gi|184193215|gb|ACC71180.1| NADH-quinone oxidoreductase, chain I [Burkholderia phymatum STM815]
          Length = 162

 Score =  175 bits (443), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 91/163 (55%), Positives = 110/163 (67%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   +      FL E +    L  RY F+ K T+ +P EK   SPRFRG HALRRY NGE
Sbjct: 1   MTAIQNFFKTFFLTELLKGLALTGRYTFQRKITVQFPEEKTPISPRFRGLHALRRYENGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIES  R  + TRRT RYDID+ KCI+CG C+E+CPVD+IVE
Sbjct: 61  ERCIACKLCEAVCPALAITIESETRADN-TRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               E+  E R +LY+ K+ LL  GDR+E+EI  N   D+PYR
Sbjct: 120 THILEYHGEKRGDLYFTKDMLLAVGDRYEAEIAANKAADAPYR 162


>gi|170696391|ref|ZP_02887520.1| NADH-quinone oxidoreductase, chain I [Burkholderia graminis C4D1M]
 gi|170138719|gb|EDT06918.1| NADH-quinone oxidoreductase, chain I [Burkholderia graminis C4D1M]
          Length = 162

 Score =  175 bits (443), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 92/163 (56%), Positives = 110/163 (67%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   +      FL E +    L  RY F+ K T+ +P EK   SPRFRG HALRRY NGE
Sbjct: 1   MTAIQNFFKTFFLTELIKGLALTGRYTFQRKVTVQFPEEKTPISPRFRGLHALRRYENGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIES  R  D TRRT RYDID+ KCI+CG C+E+CPVD+IVE
Sbjct: 61  ERCIACKLCEAVCPALAITIESETR-EDNTRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               E+  E R +LY+ K+ LL  GDR+E+EI  N   D+PYR
Sbjct: 120 THILEYHGEKRGDLYFTKDMLLAVGDRYEAEIAANKAADAPYR 162


>gi|241949545|ref|XP_002417495.1| NADH-ubiquinone oxidoreductase 23 subunit, mitochondrial precursor,
           putative; mitochondrial complex I, NUIM subunit,
           putative [Candida dubliniensis CD36]
 gi|223640833|emb|CAX45148.1| NADH-ubiquinone oxidoreductase 23 subunit, mitochondrial precursor,
           putative [Candida dubliniensis CD36]
          Length = 247

 Score =  175 bits (443), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 105/160 (65%), Positives = 122/160 (76%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
                 FLFL E     ++CL  +F+A  TI YPFEKG  SPRFRGEHALRRYP+GEERC
Sbjct: 89  LSKATKFLFLSEIARGMYICLEMYFRAPYTIYYPFEKGPISPRFRGEHALRRYPSGEERC 148

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAITIE+  R   G+RRT +YDIDM KCIYCG CQE+CPVDAIVE PN
Sbjct: 149 IACKLCEAICPAQAITIEAEERID-GSRRTYKYDIDMTKCIYCGYCQESCPVDAIVETPN 207

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            E++T TR+EL Y+KE+LL NGD+WE E+   I  D+PYR
Sbjct: 208 VEYSTATREELLYNKEKLLENGDKWEQELQYCIDADAPYR 247


>gi|239816475|ref|YP_002945385.1| NADH dehydrogenase subunit I [Variovorax paradoxus S110]
 gi|239803052|gb|ACS20119.1| NADH-quinone oxidoreductase, chain I [Variovorax paradoxus S110]
          Length = 181

 Score =  174 bits (442), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 87/160 (54%), Positives = 106/160 (66%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
            +  +    L E      +  +Y F  K T+ +P EK   SPRFRG HALRRY NGEERC
Sbjct: 23  LKDFLGSFMLFELFKGLAITGKYAFARKITVQFPEEKTPLSPRFRGLHALRRYENGEERC 82

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEA+CPA AITIES  R   G+RRT RYDID+ KCI+CG C+E+CPVD+IVE   
Sbjct: 83  IACKLCEAVCPALAITIESDVRDD-GSRRTTRYDIDLTKCIFCGFCEESCPVDSIVETHI 141

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FE+  E R +LY+ K+ LL  GDR+E EI  N   D+ YR
Sbjct: 142 FEYHGEKRGDLYFTKDMLLAVGDRYEKEIAANKAADAKYR 181


>gi|332029694|gb|EGI69573.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial [Acromyrmex echinatior]
          Length = 197

 Score =  174 bits (442), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 109/161 (67%), Positives = 123/161 (76%), Gaps = 1/161 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           I     + +FL E +    L +    +   TINYPFEKG  SPRFRGEHALRRYP+GEER
Sbjct: 38  IMEAATTHMFLLEIIRGMGLAVSQILREPATINYPFEKGPLSPRFRGEHALRRYPSGEER 97

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCEAICPAQAITIE+  R   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGP
Sbjct: 98  CIACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMSKCIYCGFCQEACPVDAIVEGP 156

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           NFEF+TET +E+ Y+KE+LLNNGD+WESEI  NI  D  YR
Sbjct: 157 NFEFSTETHEEMLYNKEKLLNNGDKWESEIASNIHADHLYR 197


>gi|170581266|ref|XP_001895608.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           precursor [Brugia malayi]
 gi|158597368|gb|EDP35534.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           precursor, putative [Brugia malayi]
          Length = 206

 Score =  174 bits (442), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 105/160 (65%), Positives = 125/160 (78%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           FR  + ++F+ E +    + + ++F    TINYPFEKG  S RFRGEHALRRYP+GEERC
Sbjct: 48  FRKAMHYMFMTELIRGMGIIVGHYFMEPATINYPFEKGPLSSRFRGEHALRRYPSGEERC 107

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAITIE+  R   G+RRT RYDIDM KCIYCGLCQEACPVDAIVEGPN
Sbjct: 108 IACKLCEAICPAQAITIEAEARPD-GSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGPN 166

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FE++TET +EL Y+KE+LL NGDRWE E+  N+  +  YR
Sbjct: 167 FEYSTETHEELLYNKEKLLLNGDRWEPELAANLQAEYLYR 206


>gi|121604338|ref|YP_981667.1| NADH dehydrogenase subunit I [Polaromonas naphthalenivorans CJ2]
 gi|156633538|sp|A1VM68|NUOI_POLNA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|120593307|gb|ABM36746.1| NADH dehydrogenase subunit I [Polaromonas naphthalenivorans CJ2]
          Length = 165

 Score =  174 bits (442), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 92/159 (57%), Positives = 109/159 (68%), Gaps = 1/159 (0%)

Query: 5   RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64
           +  VS   L E +    L  +Y F  K TI +P EK   SPRFRG HALRRY NGEERCI
Sbjct: 8   KDFVSSFMLTELLKGMALTGKYMFSRKITIQFPEEKTPLSPRFRGLHALRRYENGEERCI 67

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           ACKLCEA+CPA AITIES  R  DG+RRT RYDID+ KCI+CG C+E+CPVD+IVE    
Sbjct: 68  ACKLCEAVCPALAITIESDVR-EDGSRRTSRYDIDLTKCIFCGFCEESCPVDSIVETHIL 126

Query: 125 EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           E+  E R +LY+ KE LL  GDR+E+EI  N   D+ YR
Sbjct: 127 EYHGEKRGDLYFTKEMLLAVGDRYENEIAANRAADAKYR 165


>gi|261856542|ref|YP_003263825.1| NADH-quinone oxidoreductase, chain I [Halothiobacillus neapolitanus
           c2]
 gi|261837011|gb|ACX96778.1| NADH-quinone oxidoreductase, chain I [Halothiobacillus neapolitanus
           c2]
          Length = 162

 Score =  174 bits (442), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 96/163 (58%), Positives = 110/163 (67%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M  F+  V   FL E      +  +YFF  K T+ YP EK   SPRFRG HALRRY NGE
Sbjct: 1   MNAFKQFVKTWFLWELFLGLSVTGKYFFGRKFTVQYPEEKTPMSPRFRGLHALRRYANGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIES  R   GTRRT RYDID+ KCIYCG C+EACPVD+IVE
Sbjct: 61  ERCIACKLCEAVCPALAITIESEQRAD-GTRRTTRYDIDLFKCIYCGFCEEACPVDSIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
              FE+  E R E    KE+LL  GDR ES+I  + + D+PYR
Sbjct: 120 TRVFEYHFEARGEQIMTKEKLLEIGDRLESQIAADRLADAPYR 162


>gi|323525444|ref|YP_004227597.1| NADH-quinone oxidoreductase subunit I [Burkholderia sp. CCGE1001]
 gi|323382446|gb|ADX54537.1| NADH-quinone oxidoreductase, chain I [Burkholderia sp. CCGE1001]
          Length = 162

 Score =  174 bits (442), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 94/163 (57%), Positives = 110/163 (67%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   +      FL E V    L  RY F+ K T+ +P EK   SPRFRG HALRRY NGE
Sbjct: 1   MTAIQNFFKTFFLTELVKGLALTGRYTFQRKVTVQFPEEKTPISPRFRGLHALRRYENGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIES  R  D TRRT RYDID+ KCI+CG C+E+CPVD+IVE
Sbjct: 61  ERCIACKLCEAVCPALAITIESETR-EDNTRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               E+  E R +LY+ KE LL  GDR+E+EI  N   D+PYR
Sbjct: 120 THILEYHGEKRGDLYFTKEMLLAVGDRYETEIAANKAADAPYR 162


>gi|257095311|ref|YP_003168952.1| NADH dehydrogenase subunit I [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257047835|gb|ACV37023.1| NADH-quinone oxidoreductase, chain I [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 162

 Score =  174 bits (442), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 93/163 (57%), Positives = 111/163 (68%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   +   + L L+E      +  RY F  K T+ YP EK   S RFRG HALRRYPNGE
Sbjct: 1   MGSMKEVFNSLLLRELFKGMSVTGRYMFARKITVQYPEEKTPQSFRFRGLHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIES  R   G+RRT RYDID+ KCI+CG C+EACPVDAIVE
Sbjct: 61  ERCIACKLCEAVCPAMAITIESDQRDD-GSRRTTRYDIDLTKCIFCGFCEEACPVDAIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
              +E+  ETR +LYY K  LL NGDR+E++I  +   D+ YR
Sbjct: 120 TRIYEYHGETRGDLYYTKPMLLANGDRYEAQIAEDRELDAKYR 162


>gi|255728045|ref|XP_002548948.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           precursor [Candida tropicalis MYA-3404]
 gi|240133264|gb|EER32820.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           precursor [Candida tropicalis MYA-3404]
          Length = 231

 Score =  174 bits (442), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 102/160 (63%), Positives = 121/160 (75%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
                 F FL E     ++C+  +F++  TI YPFEKG  SPRFRGEHALRRYP+GEERC
Sbjct: 73  LSKATKFFFLSEIARGMYICMEMYFRSPYTIYYPFEKGPISPRFRGEHALRRYPSGEERC 132

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAITIE+  R   G+RRT +YDIDM KCIYCG CQE+CPVDAIVE PN
Sbjct: 133 IACKLCEAICPAQAITIEAEERID-GSRRTYKYDIDMTKCIYCGYCQESCPVDAIVETPN 191

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            E++T TR+EL Y+KE+LL NGD+WE E+   I  D+PYR
Sbjct: 192 VEYSTATREELLYNKEKLLENGDKWEQELQYCIDADAPYR 231


>gi|167646786|ref|YP_001684449.1| NADH dehydrogenase subunit I [Caulobacter sp. K31]
 gi|167349216|gb|ABZ71951.1| NADH-quinone oxidoreductase, chain I [Caulobacter sp. K31]
          Length = 164

 Score =  174 bits (442), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 112/163 (68%), Positives = 130/163 (79%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M+     +  + L +F GAF L ++Y    K T+ YP E+G  SPRFRGEHALRRYP+GE
Sbjct: 3   MQRISQAIKGVALLDFAGAFGLGIKYMLAPKKTVIYPNERGPQSPRFRGEHALRRYPSGE 62

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE+ PR   G+RRT RYDIDM+KCIYCGLCQEACPVDAIVE
Sbjct: 63  ERCIACKLCEAICPAQAITIEAEPRDD-GSRRTTRYDIDMVKCIYCGLCQEACPVDAIVE 121

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPN EFA ETR+ELYYDKE+LL+NGDRWE  I +N+  D+PYR
Sbjct: 122 GPNIEFAVETREELYYDKEKLLDNGDRWERLIAKNLELDAPYR 164


>gi|329850720|ref|ZP_08265565.1| NADH-quinone oxidoreductase subunit 9 [Asticcacaulis biprosthecum
           C19]
 gi|328841035|gb|EGF90606.1| NADH-quinone oxidoreductase subunit 9 [Asticcacaulis biprosthecum
           C19]
          Length = 159

 Score =  174 bits (442), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 117/156 (75%), Positives = 131/156 (83%), Gaps = 1/156 (0%)

Query: 8   VSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACK 67
           +    L +FVGA FL ++Y F+ K TINYPFEKG  SPRFRGEHALRRY NGEERCIACK
Sbjct: 5   IKAALLLDFVGATFLAVKYMFRHKATINYPFEKGPISPRFRGEHALRRYANGEERCIACK 64

Query: 68  LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           LCEAICPAQAITIE+ PR   G+RRT RYDIDM+KCIYCGLCQEACPVDAIVEGPNFEF+
Sbjct: 65  LCEAICPAQAITIEAEPRDD-GSRRTTRYDIDMVKCIYCGLCQEACPVDAIVEGPNFEFS 123

Query: 128 TETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           T+TR+EL YDK+RLL NGDRWE EI R +  D+PYR
Sbjct: 124 TDTREELLYDKDRLLANGDRWEREIARALELDAPYR 159


>gi|124266604|ref|YP_001020608.1| NADH dehydrogenase subunit I [Methylibium petroleiphilum PM1]
 gi|156633524|sp|A2SFN4|NUOI_METPP RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|124259379|gb|ABM94373.1| NADH dehydrogenase [Methylibium petroleiphilum PM1]
          Length = 165

 Score =  174 bits (441), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 88/160 (55%), Positives = 108/160 (67%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
            +   +  FL E +    L  R+F     T+ +P EK   SPRFRG HALRRY NGEERC
Sbjct: 7   IKEFFNTFFLLELLKGMKLTGRHFLSPAITVQFPEEKTPLSPRFRGLHALRRYENGEERC 66

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEA+CPA AITIES  R   G+RRT RYDID+ KCI+CG C+E+CPVD+IVE   
Sbjct: 67  IACKLCEAVCPALAITIESEVRDD-GSRRTTRYDIDLTKCIFCGFCEESCPVDSIVETHI 125

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FE+  E R +LY+ K+ LL  GDR+E+EI  N   D+ YR
Sbjct: 126 FEYHGEKRGDLYFTKDMLLAVGDRYENEIAANKEADAAYR 165


>gi|221234957|ref|YP_002517393.1| NADH dehydrogenase subunit I [Caulobacter crescentus NA1000]
 gi|220964129|gb|ACL95485.1| NADH-quinone oxidoreductase chain I [Caulobacter crescentus NA1000]
          Length = 193

 Score =  174 bits (441), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 114/160 (71%), Positives = 128/160 (80%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
               V    L +F GAF L ++Y    K T+ YP E+   SPRFRGEHALRRYP+GEERC
Sbjct: 35  ITQAVKGAALLDFAGAFGLAMKYMVAPKKTVIYPNERNPQSPRFRGEHALRRYPSGEERC 94

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAITIE+ PR  DG+RRT RYDIDM+KCIYCGLCQEACPVDAIVEGPN
Sbjct: 95  IACKLCEAICPAQAITIEAEPR-EDGSRRTTRYDIDMVKCIYCGLCQEACPVDAIVEGPN 153

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            EFATETR+ELYYDKERLL+NGDRWE  I +N+  D+PYR
Sbjct: 154 TEFATETREELYYDKERLLDNGDRWERLIAKNLELDAPYR 193


>gi|221068604|ref|ZP_03544709.1| NADH-quinone oxidoreductase, chain I [Comamonas testosteroni KF-1]
 gi|264677206|ref|YP_003277112.1| NADH-quinone oxidoreductase, chain I [Comamonas testosteroni CNB-2]
 gi|299530750|ref|ZP_07044165.1| NADH dehydrogenase subunit I [Comamonas testosteroni S44]
 gi|220713627|gb|EED68995.1| NADH-quinone oxidoreductase, chain I [Comamonas testosteroni KF-1]
 gi|262207718|gb|ACY31816.1| NADH-quinone oxidoreductase, chain I [Comamonas testosteroni CNB-2]
 gi|298721266|gb|EFI62208.1| NADH dehydrogenase subunit I [Comamonas testosteroni S44]
          Length = 169

 Score =  174 bits (441), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 90/160 (56%), Positives = 109/160 (68%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           F+  +    L E      L  RY F+ K T+ +P EK   SPRFRG HALRRY NGEERC
Sbjct: 11  FKDFLKSFMLWELAKGMALTGRYTFRRKITVQFPEEKTPQSPRFRGLHALRRYENGEERC 70

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEA+CPA AITIES  R   G+RRT RYDID+ KCI+CG C+E+CPVD+IVE   
Sbjct: 71  IACKLCEAVCPAMAITIESDVRDD-GSRRTTRYDIDLTKCIFCGFCEESCPVDSIVETHI 129

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FE+  E R +LY+ K+ LL  GDR+E+EI  N   D+ YR
Sbjct: 130 FEYHGEKRGDLYFTKDMLLAVGDRYEAEIAANKAADAKYR 169


>gi|83858406|ref|ZP_00951928.1| NADH dehydrogenase subunit I [Oceanicaulis alexandrii HTCC2633]
 gi|83853229|gb|EAP91081.1| NADH dehydrogenase subunit I [Oceanicaulis alexandrii HTCC2633]
          Length = 162

 Score =  174 bits (441), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 119/163 (73%), Positives = 131/163 (80%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M      +    L +F GAF L +RYFF+ K TINYPFEKG  SPRFRG+HALRRY NGE
Sbjct: 1   MSRIAQTLRGAALMDFWGAFALGMRYFFRKKPTINYPFEKGRLSPRFRGQHALRRYANGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE+ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIVE
Sbjct: 61  ERCIACKLCEAICPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGYCQEACPVDAIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEFATETR+ELYYDK +LL+NGDRWE EI RN+  D+ YR
Sbjct: 120 GPNFEFATETREELYYDKAKLLDNGDRWEREIARNLELDARYR 162


>gi|294677068|ref|YP_003577683.1| NADH-quinone oxidoreductase subunit I [Rhodobacter capsulatus SB
           1003]
 gi|1171863|sp|P42031|NUOI_RHOCA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|3282573|gb|AAC24999.1| NUOI [Rhodobacter capsulatus]
 gi|294475888|gb|ADE85276.1| NADH-quinone oxidoreductase, I subunit [Rhodobacter capsulatus SB
           1003]
 gi|1586522|prf||2204231C NADH ubiquinone oxidoreductase
          Length = 163

 Score =  174 bits (441), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 111/158 (70%), Positives = 127/158 (80%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
               +  L +F+  F L ++YF   K T+NYP EKG  SPRFRGEHALRRYP+GEERCIA
Sbjct: 7   RAAKYFVLWDFIKGFALGMKYFVAPKPTLNYPHEKGPLSPRFRGEHALRRYPSGEERCIA 66

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEAICPAQAITI++ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE
Sbjct: 67  CKLCEAICPAQAITIDAEPRDD-GSRRTTRYDIDMTKCIYCGYCQEACPVDAIVEGPNFE 125

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           +ATETR+EL+Y KE+LL NG RWE+EI RNI  D+PYR
Sbjct: 126 YATETREELFYTKEKLLENGARWEAEIARNIEMDAPYR 163


>gi|238501446|ref|XP_002381957.1| NADH-quinone oxidoreductase, 23 kDa subunit, putative [Aspergillus
           flavus NRRL3357]
 gi|220692194|gb|EED48541.1| NADH-quinone oxidoreductase, 23 kDa subunit, putative [Aspergillus
           flavus NRRL3357]
          Length = 226

 Score =  174 bits (441), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 103/160 (64%), Positives = 117/160 (73%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
                 +  + E     ++ L  FF+   TI YPFEKG  SPRFRGEHALRRYP GEERC
Sbjct: 68  LDKASKYFLMSEIFRGMYVVLEQFFRPPYTIFYPFEKGPISPRFRGEHALRRYPTGEERC 127

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAITIE+  R  DG+RRT RYDIDM KCIYCG CQE+CPVDAIVE  N
Sbjct: 128 IACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGYCQESCPVDAIVETAN 186

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            E+ATETR+EL Y+KE+LL NGD+WE EI      D+PYR
Sbjct: 187 AEYATETREELLYNKEKLLANGDKWEPEIAAAARADAPYR 226


>gi|169769016|ref|XP_001818978.1| NADH-ubiquinone oxidoreductase subunit [Aspergillus oryzae RIB40]
 gi|83766836|dbj|BAE56976.1| unnamed protein product [Aspergillus oryzae]
          Length = 226

 Score =  174 bits (440), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 103/160 (64%), Positives = 117/160 (73%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
                 +  + E     ++ L  FF+   TI YPFEKG  SPRFRGEHALRRYP GEERC
Sbjct: 68  LDKASKYFLMSEIFRGMYVVLEQFFRPPYTIFYPFEKGPISPRFRGEHALRRYPTGEERC 127

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAITIE+  R  DG+RRT RYDIDM KCIYCG CQE+CPVDAIVE  N
Sbjct: 128 IACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGYCQESCPVDAIVETAN 186

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            E+ATETR+EL Y+KE+LL NGD+WE EI      D+PYR
Sbjct: 187 AEYATETREELLYNKEKLLANGDKWEPEIAAAARADAPYR 226


>gi|323456536|gb|EGB12403.1| hypothetical protein AURANDRAFT_52238 [Aureococcus anophagefferens]
          Length = 214

 Score =  174 bits (440), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 103/159 (64%), Positives = 117/159 (73%), Gaps = 1/159 (0%)

Query: 5   RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64
                 LFL +      +      K K TINYPFEKG  SPRFRGEHALRRYP+GEERCI
Sbjct: 57  DRMAGVLFLTDIWRGIAITGEVVSKPKVTINYPFEKGPLSPRFRGEHALRRYPSGEERCI 116

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           ACKLCEA+CPAQAITIE+  R   G+R+T RYDIDM KCIYCG CQEACPVDAIVEGPN+
Sbjct: 117 ACKLCEAVCPAQAITIEAEARAD-GSRKTTRYDIDMTKCIYCGYCQEACPVDAIVEGPNY 175

Query: 125 EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           EF  ET +EL YDKE+LLNNGD+WE  I +N+  +  YR
Sbjct: 176 EFTAETHEELIYDKEKLLNNGDKWEFAIAKNLAAEHHYR 214


>gi|209548872|ref|YP_002280789.1| NADH dehydrogenase subunit I [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|226737409|sp|B5ZYM2|NUOI_RHILW RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|209534628|gb|ACI54563.1| NADH-quinone oxidoreductase, chain I [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 163

 Score =  174 bits (440), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 129/150 (86%), Positives = 137/150 (91%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
           KEF GAFFL +RYFF+ K TINYPFEKG  SPRFRGEHALRRYPNGEERCIACKLCEAIC
Sbjct: 14  KEFFGAFFLSMRYFFRQKATINYPFEKGPVSPRFRGEHALRRYPNGEERCIACKLCEAIC 73

Query: 74  PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
           PAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVEGPNFEFATETR+E
Sbjct: 74  PAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVEGPNFEFATETREE 133

Query: 134 LYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           LY+DK RLL+NGDRWE EI RNI  DSPYR
Sbjct: 134 LYFDKARLLDNGDRWEREIARNIAIDSPYR 163


>gi|259484821|tpe|CBF81370.1| TPA: hypothetical protein similar to : Formate hydrogenlyase
           subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit
           (Broad) [Aspergillus nidulans FGSC A4]
          Length = 224

 Score =  174 bits (440), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 101/160 (63%), Positives = 116/160 (72%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
                 +  + E     ++ L  FF+   TI YPFEKG  SPRFRGEHALRRYP GEERC
Sbjct: 66  LDKASKYFLMAEIFRGMYVVLEQFFRPPYTIFYPFEKGPISPRFRGEHALRRYPTGEERC 125

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEA+CPAQAITIE+  R   G+RRT RYDIDM KCIYCG CQE+CPVDAIVE  N
Sbjct: 126 IACKLCEAVCPAQAITIEAEERVD-GSRRTTRYDIDMTKCIYCGYCQESCPVDAIVETAN 184

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            E+ATETR+EL Y+KE+LL NGD+WE EI      D+PYR
Sbjct: 185 AEYATETREELLYNKEKLLANGDKWEPEIAAAARADAPYR 224


>gi|294656335|ref|XP_458595.2| DEHA2D02948p [Debaryomyces hansenii CBS767]
 gi|199431392|emb|CAG86730.2| DEHA2D02948p [Debaryomyces hansenii]
          Length = 243

 Score =  174 bits (440), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 105/160 (65%), Positives = 123/160 (76%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
                 F FL E     ++CL  +F+A  TI YPFEKG  SPRFRGEHALRRYP+GEERC
Sbjct: 85  LSKATKFFFLNEIARGMYVCLEMYFRAPYTIYYPFEKGPISPRFRGEHALRRYPSGEERC 144

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAITIE+  R   G+RRTV+YDIDM KCIYCG CQ++CPVDAIVE PN
Sbjct: 145 IACKLCEAICPAQAITIEAEERMD-GSRRTVKYDIDMTKCIYCGYCQDSCPVDAIVESPN 203

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            E++TETR+EL Y+KE+LL NGD+WE E+   I  D+PYR
Sbjct: 204 VEYSTETREELLYNKEKLLENGDKWEQELQYCIDADAPYR 243


>gi|255942799|ref|XP_002562168.1| Pc18g03280 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211586901|emb|CAP94552.1| Pc18g03280 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 220

 Score =  174 bits (440), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 103/160 (64%), Positives = 118/160 (73%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
                 +  + E     ++ L  FF+   TI YPFEKG  SPRFRGEHALRRYP GEERC
Sbjct: 62  LDKASKYFLMAEIFRGMYVVLEQFFRPPYTIFYPFEKGPISPRFRGEHALRRYPTGEERC 121

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAITIE+  R  DG+RRT RYDIDM KCIYCG CQE+CPVDAIVE  N
Sbjct: 122 IACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGYCQESCPVDAIVETSN 180

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            E+ATETR+EL Y+KE+LL+NGD+WE EI      D+PYR
Sbjct: 181 AEYATETREELLYNKEKLLSNGDKWEPEIAAAARADAPYR 220


>gi|307195743|gb|EFN77575.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial [Harpegnathos saltator]
          Length = 152

 Score =  174 bits (440), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 107/153 (69%), Positives = 122/153 (79%), Gaps = 1/153 (0%)

Query: 11  LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70
           +F+ E      + + + F+   TINYPFEKG  SPRFRGEHALRRYP+GEERCIACKLCE
Sbjct: 1   MFMLEIFRGLGVAVSHMFREPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCE 60

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
           AICPAQAITIE+  R   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFEF+TET
Sbjct: 61  AICPAQAITIEAEERID-GSRRTTRYDIDMSKCIYCGFCQEACPVDAIVEGPNFEFSTET 119

Query: 131 RQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            +E+ Y+KE+LLNNGD+WESEI  NI  D  YR
Sbjct: 120 HEEMLYNKEKLLNNGDKWESEIASNIHADHLYR 152


>gi|297285975|ref|XP_002802906.1| PREDICTED: hypothetical protein LOC716487 [Macaca mulatta]
          Length = 360

 Score =  174 bits (440), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 97/153 (63%), Positives = 109/153 (71%), Gaps = 13/153 (8%)

Query: 11  LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70
           L   E      + L Y F+   TINYPFEKG  SPRFRGEHALRRYP+GEERCIACKLCE
Sbjct: 221 LLWTELFRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCE 280

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
           A+CPAQAITIE+ PR   G+RRT RYDIDM KCIYCG C            PNFEF+TET
Sbjct: 281 AVCPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFC------------PNFEFSTET 327

Query: 131 RQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            +EL Y+KE+LLNNGD+WE+EI  NI  D  YR
Sbjct: 328 HEELLYNKEKLLNNGDKWEAEIAANIQADYLYR 360


>gi|254491908|ref|ZP_05105087.1| NADH-quinone oxidoreductase, chain I subfamily [Methylophaga
           thiooxidans DMS010]
 gi|224463386|gb|EEF79656.1| NADH-quinone oxidoreductase, chain I subfamily [Methylophaga
           thiooxydans DMS010]
          Length = 162

 Score =  173 bits (439), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 88/163 (53%), Positives = 108/163 (66%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   R       L E +    L  +Y F  K T+ YP EK   SPRFRG HALRRYPNGE
Sbjct: 1   MNQLRHFFKSFLLWELLKGMKLTGKYLFARKVTVQYPEEKTPQSPRFRGLHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCI CKLCEA+CPA AITI++ PR   GTRRT RYDID+ KCIYCG C+E+CPVD+IVE
Sbjct: 61  ERCIGCKLCEAVCPALAITIDTEPRDD-GTRRTTRYDIDLFKCIYCGFCEESCPVDSIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
             +FE+  E R +    K++LL  GD++E +I  +   D+PYR
Sbjct: 120 TRHFEYHFEERGDHVITKDKLLAIGDKYEDQIAADRAEDAPYR 162


>gi|330935903|ref|XP_003305174.1| hypothetical protein PTT_17940 [Pyrenophora teres f. teres 0-1]
 gi|311317931|gb|EFQ86730.1| hypothetical protein PTT_17940 [Pyrenophora teres f. teres 0-1]
          Length = 230

 Score =  173 bits (439), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 106/162 (65%), Positives = 119/162 (73%), Gaps = 1/162 (0%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
                   +  L E     ++ L  FF+   TI YPFEKG  SPRFRGEHALRRYP GEE
Sbjct: 70  NALDQAGKYFLLMEMFRGMYVSLEQFFRPPYTIFYPFEKGPISPRFRGEHALRRYPTGEE 129

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLCEAICPAQAITIE+  R   G+RRT RYDIDM KCIYCGLCQE+CPVDAIVEG
Sbjct: 130 RCIACKLCEAICPAQAITIEAEERMD-GSRRTTRYDIDMTKCIYCGLCQESCPVDAIVEG 188

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           PN E+ATETR+EL Y+KE+LL NGD+WE EI      D+PYR
Sbjct: 189 PNAEYATETREELLYNKEKLLANGDKWEPEIAAAARADAPYR 230


>gi|189191492|ref|XP_001932085.1| NADH-quinone oxidoreductase subunit I [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187973691|gb|EDU41190.1| NADH-quinone oxidoreductase subunit I [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 230

 Score =  173 bits (439), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 106/162 (65%), Positives = 119/162 (73%), Gaps = 1/162 (0%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
                   +  L E     ++ L  FF+   TI YPFEKG  SPRFRGEHALRRYP GEE
Sbjct: 70  NALDQAGKYFLLMEMFRGMYVSLEQFFRPPYTIFYPFEKGPISPRFRGEHALRRYPTGEE 129

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLCEAICPAQAITIE+  R   G+RRT RYDIDM KCIYCGLCQE+CPVDAIVEG
Sbjct: 130 RCIACKLCEAICPAQAITIEAEERMD-GSRRTTRYDIDMTKCIYCGLCQESCPVDAIVEG 188

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           PN E+ATETR+EL Y+KE+LL NGD+WE EI      D+PYR
Sbjct: 189 PNAEYATETREELLYNKEKLLANGDKWEPEIAAAARADAPYR 230


>gi|114798298|ref|YP_760457.1| NADH dehydrogenase subunit I [Hyphomonas neptunium ATCC 15444]
 gi|123128794|sp|Q0C1D6|NUOI_HYPNA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|114738472|gb|ABI76597.1| NADH-quinone oxidoreductase, I subunit [Hyphomonas neptunium ATCC
           15444]
          Length = 161

 Score =  173 bits (439), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 113/158 (71%), Positives = 129/158 (81%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
             +    L +F+GA ++ +R  F+ K T+NYPFEK   SPRFRGEH LRRYP+GEERCIA
Sbjct: 5   QTLRGALLTDFMGAAWIAVREMFRRKATVNYPFEKNPLSPRFRGEHVLRRYPSGEERCIA 64

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEAICPAQAITIE+ PR  DG RRT RYDIDM+KCIYCG CQEACPVDAIVEGPNFE
Sbjct: 65  CKLCEAICPAQAITIEAEPR-EDGARRTTRYDIDMVKCIYCGFCQEACPVDAIVEGPNFE 123

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FATETR+EL+YDKERLL NGDRWE  I +N+  D+PYR
Sbjct: 124 FATETREELFYDKERLLANGDRWERLIAKNLELDAPYR 161


>gi|304319939|ref|YP_003853582.1| NADH dehydrogenase I, I subunit [Parvularcula bermudensis HTCC2503]
 gi|303298842|gb|ADM08441.1| NADH dehydrogenase I, I subunit [Parvularcula bermudensis HTCC2503]
          Length = 162

 Score =  173 bits (439), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 111/163 (68%), Positives = 130/163 (79%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M      +    L +F  AF+L ++YFF+ K T+NYPFE+G +SPRFRGEHALRRYPNGE
Sbjct: 1   MSRVAQALKGATLSDFTSAFWLGMKYFFRPKATVNYPFERGPSSPRFRGEHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPAQAITIE+  R   G+RRT RYDIDM+KCIYCGLCQE+CPVDAIVE
Sbjct: 61  ERCIACKLCEAVCPAQAITIEAEERAD-GSRRTTRYDIDMVKCIYCGLCQESCPVDAIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GP  + ATETR+EL YDK+RLL NGDRWE  I +NI  D+PYR
Sbjct: 120 GPTLQIATETREELLYDKDRLLANGDRWERLIAKNIELDAPYR 162


>gi|226487082|emb|CAX75406.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8 [Schistosoma
           japonicum]
 gi|226487084|emb|CAX75407.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8 [Schistosoma
           japonicum]
 gi|226487086|emb|CAX75408.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8 [Schistosoma
           japonicum]
 gi|226487088|emb|CAX75409.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8 [Schistosoma
           japonicum]
          Length = 206

 Score =  173 bits (439), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 104/155 (67%), Positives = 117/155 (75%), Gaps = 1/155 (0%)

Query: 9   SFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKL 68
             L   + +    L     FK   T+NYPFEK   SPRFRGEHALRRYP+GEERCIACKL
Sbjct: 53  RLLLAIDIIRGLRLTFAMIFKEPATLNYPFEKSPLSPRFRGEHALRRYPSGEERCIACKL 112

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
           CEAICPAQAITIE+ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE++T
Sbjct: 113 CEAICPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEYST 171

Query: 129 ETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           +T +EL Y+KE+LL NGDRWE EI  N+  D  YR
Sbjct: 172 QTHEELLYNKEKLLQNGDRWEVEISENLKADYVYR 206


>gi|169599789|ref|XP_001793317.1| hypothetical protein SNOG_02720 [Phaeosphaeria nodorum SN15]
 gi|160705324|gb|EAT89451.2| hypothetical protein SNOG_02720 [Phaeosphaeria nodorum SN15]
          Length = 230

 Score =  173 bits (438), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 104/160 (65%), Positives = 119/160 (74%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
                 +  L E     ++ +  FF+   TI YPFEKG  SPRFRGEHALRRYP GEERC
Sbjct: 72  LDRAGKYFLLMEMFRGMYVSMEQFFRPPYTIFYPFEKGPISPRFRGEHALRRYPTGEERC 131

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAITIE+  R   G+RRT RYDIDM KCIYCGLCQE+CPVDAIVEGPN
Sbjct: 132 IACKLCEAICPAQAITIEAEERMD-GSRRTTRYDIDMTKCIYCGLCQESCPVDAIVEGPN 190

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            E+ATE+R+EL Y+KE+LL NGD+WE EI      D+PYR
Sbjct: 191 AEYATESREELLYNKEKLLANGDKWEPEIAAAARADAPYR 230


>gi|74317168|ref|YP_314908.1| NADH dehydrogenase subunit I [Thiobacillus denitrificans ATCC
           25259]
 gi|115502546|sp|Q3SJP9|NUOI_THIDA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|74056663|gb|AAZ97103.1| NADH-quinone oxidoreductase chain I [Thiobacillus denitrificans
           ATCC 25259]
          Length = 162

 Score =  173 bits (438), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 89/163 (54%), Positives = 109/163 (66%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           MR        LFL E +    L  R+ F  K T+ +P EK   SPRFRG HALRRYPNGE
Sbjct: 1   MRRITHFFGSLFLVELLRGMMLTGRHLFARKVTVQFPEEKTPQSPRFRGLHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITI+S  R   GTRRT RYDID+ KCI+CG C+E+CPVD+IVE
Sbjct: 61  ERCIACKLCEAVCPALAITIDSEQRAD-GTRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               E+  E R +L Y K  LL  GD++E++I ++   D+ YR
Sbjct: 120 TRILEYHGEQRGDLIYTKPMLLAIGDKYEAQIAQDRAQDAKYR 162


>gi|114777369|ref|ZP_01452366.1| NADH dehydrogenase subunit I [Mariprofundus ferrooxydans PV-1]
 gi|114552151|gb|EAU54653.1| NADH dehydrogenase subunit I [Mariprofundus ferrooxydans PV-1]
          Length = 160

 Score =  172 bits (437), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 96/160 (60%), Positives = 108/160 (67%), Gaps = 1/160 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           + +  +    L E V    L  RY F+ K T+ YP EK   SPRFRG HALRRY +GEER
Sbjct: 1   MIKKALKTWLLWELVLGLALTGRYMFQKKITVEYPEEKTPLSPRFRGLHALRRYESGEER 60

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCE ICPA AI IES  R   G+RRT RYDID  KCIYCGLCQEACPVDAIVE  
Sbjct: 61  CIACKLCEVICPAVAILIESAERDD-GSRRTTRYDIDFSKCIYCGLCQEACPVDAIVETQ 119

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPY 162
            FE+ATETR  LYY K+ LL  GDR E +I  N+  D+ Y
Sbjct: 120 EFEYATETRDGLYYTKDMLLAVGDRNEKQIAANLAADARY 159


>gi|157964943|ref|YP_001499767.1| NADH dehydrogenase subunit I [Rickettsia massiliae MTU5]
 gi|157844719|gb|ABV85220.1| NADH dehydrogenase I chain I [Rickettsia massiliae MTU5]
          Length = 162

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 109/163 (66%), Positives = 118/163 (72%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M      +   FL E V    L L+YFFK K TINYP+EK   SPRF+GEHALRRY NGE
Sbjct: 1   MIFMINYLKSFFLYEIVRGMALTLKYFFKPKVTINYPYEKSPVSPRFKGEHALRRYENGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAI IE+  R  DG+RRT RYDIDM KCIYCGLCQ ACPVDAIVE
Sbjct: 61  ERCIACKLCEAICPAQAIVIEADER-EDGSRRTTRYDIDMTKCIYCGLCQAACPVDAIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFEFA+ T   L YDKERLL NGDRWE  +   +  D  YR
Sbjct: 120 GPNFEFASLTHTALIYDKERLLQNGDRWEQALASKLHKDYEYR 162


>gi|325983281|ref|YP_004295683.1| NADH-quinone oxidoreductase, chain I [Nitrosomonas sp. AL212]
 gi|325532800|gb|ADZ27521.1| NADH-quinone oxidoreductase, chain I [Nitrosomonas sp. AL212]
          Length = 162

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 91/163 (55%), Positives = 111/163 (68%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   +   +   L E +    +  +Y FK K T++YP EK   SPRFRG HALRRYPNGE
Sbjct: 1   MDRIKKFFNTFLLFELLKGMAVTGKYLFKPKITVHYPEEKTPQSPRFRGLHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIES  R   GTRRT RYDID+ KCI+CG C+E+CPVD+IVE
Sbjct: 61  ERCIACKLCEAVCPAMAITIESEQRAD-GTRRTTRYDIDLSKCIFCGFCEESCPVDSIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               E+  E R++  Y KE LL  GDR+E +I R+   D+PYR
Sbjct: 120 TRILEYHCEKREDFIYTKEMLLAVGDRYEEQIARDREVDAPYR 162


>gi|56478184|ref|YP_159773.1| NADH dehydrogenase subunit I [Aromatoleum aromaticum EbN1]
 gi|81356980|sp|Q5P1E2|NUOI_AZOSE RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|56314227|emb|CAI08872.1| NADH dehydrogenase I , chain I [Aromatoleum aromaticum EbN1]
          Length = 161

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 90/159 (56%), Positives = 110/159 (69%), Gaps = 1/159 (0%)

Query: 5   RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64
           +  +  LFL E +    L  R+ F  K T+ +P EK   SPRFRG HALRRYPNGEERCI
Sbjct: 4   KDYIGSLFLTELIKGLALTGRHLFARKITVQFPEEKTPASPRFRGLHALRRYPNGEERCI 63

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           ACKLCEA+CPA AITIES  R   G+RRT RYDID+ KCI+CG C+EACPVDA+VE    
Sbjct: 64  ACKLCEAVCPALAITIESEQRDD-GSRRTKRYDIDLTKCIFCGFCEEACPVDAVVETRVM 122

Query: 125 EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           E+  E R +LYY K+ LL  GDR+E++I  +   D+ YR
Sbjct: 123 EYHGEKRGDLYYTKQMLLAVGDRYEAQIAADREADAKYR 161


>gi|260948246|ref|XP_002618420.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
 gi|238848292|gb|EEQ37756.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
          Length = 219

 Score =  172 bits (437), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 103/160 (64%), Positives = 122/160 (76%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
                 F FL E     ++C+  +F++  TI YPFEKG  SPRFRGEHALRRYP+GEERC
Sbjct: 61  LSKATKFFFLNEIARGMYICMEMYFRSPYTIYYPFEKGPISPRFRGEHALRRYPSGEERC 120

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAITIE+  R   G+RRT +YDIDM KCIYCG CQE+CPVDAIVE PN
Sbjct: 121 IACKLCEAICPAQAITIEAEERID-GSRRTYKYDIDMTKCIYCGYCQESCPVDAIVESPN 179

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            E++TETR+EL Y+KE+LL NGD+WE E+   I  D+PYR
Sbjct: 180 VEYSTETREELLYNKEKLLENGDKWEQELQYCIDADAPYR 219


>gi|11466585|ref|NP_066475.1| NADH dehydrogenase subunit 8 [Rhodomonas salina]
 gi|10444172|gb|AAG17746.1|AF288090_22 NADH dehydrogenase subunit 8 [Rhodomonas salina]
          Length = 162

 Score =  172 bits (436), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 105/163 (64%), Positives = 126/163 (77%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M  F  NV  LFL E     ++ L+YFF+ K T+NYPFEK   SPRFRGEHALRRY +GE
Sbjct: 1   MSYFNFNVRILFLSELFRGLWMVLQYFFRRKVTLNYPFEKAVLSPRFRGEHALRRYFSGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPAQAITIE+  R  + +R+T RYDIDM KCI+CGLCQEACPVDAIVE
Sbjct: 61  ERCIACKLCEAVCPAQAITIETESRADN-SRKTSRYDIDMTKCIFCGLCQEACPVDAIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPN+E++   RQ L Y+KE+LL NGD+WE EI  N +++S YR
Sbjct: 120 GPNYEYSVFKRQNLIYNKEKLLKNGDQWELEIRENRLSESMYR 162


>gi|321256389|ref|XP_003193382.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           precursor [Cryptococcus gattii WM276]
 gi|317459852|gb|ADV21595.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           precursor, putative [Cryptococcus gattii WM276]
          Length = 280

 Score =  172 bits (436), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 100/164 (60%), Positives = 113/164 (68%), Gaps = 7/164 (4%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
                  LFL E V   ++    FF+   TI YPFEKG  S RFRGEHALRRYPNGEERC
Sbjct: 77  IDKASQLLFLTEIVRGMWVVFEQFFRPPYTIMYPFEKGPLSARFRGEHALRRYPNGEERC 136

Query: 64  IACKLCEAICPAQAITIESGPRCH-------DGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           IACKLCEAICPAQAITIES  R          G   T++ DIDM KCIYCG CQEACPVD
Sbjct: 137 IACKLCEAICPAQAITIESEAREDGSRRTTRYGCMLTLQKDIDMTKCIYCGFCQEACPVD 196

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDS 160
           AIVE  N EF+TETR+EL Y+KE+LL NGDR E+EI  N+ ++ 
Sbjct: 197 AIVETQNQEFSTETREELLYNKEKLLLNGDRAEAEIAANLQSEH 240


>gi|207723881|ref|YP_002254279.1| nadh dehydrogenaseI(chainI protein [Ralstonia solanacearum MolK2]
 gi|206589086|emb|CAQ36048.1| nadh dehydrogenaseI(chainI protein [Ralstonia solanacearum MolK2]
          Length = 163

 Score =  172 bits (436), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 95/160 (59%), Positives = 108/160 (67%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
            +   + L LKE      L  RY F  K T+ +P EK   SPRFRG HALRRYPNGEERC
Sbjct: 5   IKEFFNSLLLKELFKGLALTGRYLFARKITVLFPEEKTPLSPRFRGLHALRRYPNGEERC 64

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEA+CPA AITIES  R   GTRRT RYDID+ KCI+CG C+EACPVDAIVE   
Sbjct: 65  IACKLCEAVCPALAITIESDQRDD-GTRRTTRYDIDLTKCIFCGFCEEACPVDAIVETHI 123

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            E+  E R +LY+ KE LL  GDR+E EI  N   D+ YR
Sbjct: 124 LEYHGEKRGDLYFTKEMLLAVGDRFEPEIAANKAADAKYR 163


>gi|17546773|ref|NP_520175.1| NADH dehydrogenase subunit I [Ralstonia solanacearum GMI1000]
 gi|83746305|ref|ZP_00943358.1| NADH-quinone oxidoreductase chain I [Ralstonia solanacearum UW551]
 gi|187929285|ref|YP_001899772.1| NADH dehydrogenase subunit I [Ralstonia pickettii 12J]
 gi|207742743|ref|YP_002259135.1| nadh dehydrogenaseI(chainI protein [Ralstonia solanacearum IPO1609]
 gi|241663476|ref|YP_002981836.1| NADH dehydrogenase subunit I [Ralstonia pickettii 12D]
 gi|309781860|ref|ZP_07676593.1| NADH dehydrogenase (ubiquinone), I subunit [Ralstonia sp.
           5_7_47FAA]
 gi|81504319|sp|Q8XXQ9|NUOI_RALSO RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|17429073|emb|CAD15761.1| probable nadh dehydrogenaseI(chainI oxidoreductase protein
           [Ralstonia solanacearum GMI1000]
 gi|83727055|gb|EAP74180.1| NADH-quinone oxidoreductase chain I [Ralstonia solanacearum UW551]
 gi|187726175|gb|ACD27340.1| NADH-quinone oxidoreductase, chain I [Ralstonia pickettii 12J]
 gi|206594137|emb|CAQ61064.1| nadh dehydrogenaseI(chainI protein [Ralstonia solanacearum IPO1609]
 gi|240865503|gb|ACS63164.1| NADH-quinone oxidoreductase, chain I [Ralstonia pickettii 12D]
 gi|299066341|emb|CBJ37525.1| NADH-quinone oxidoreductase subunit I [Ralstonia solanacearum
           CMR15]
 gi|308919501|gb|EFP65165.1| NADH dehydrogenase (ubiquinone), I subunit [Ralstonia sp.
           5_7_47FAA]
          Length = 163

 Score =  172 bits (436), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 94/160 (58%), Positives = 108/160 (67%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
            +   + L LKE      L  RY F  K T+ +P EK   SPRFRG HALRRYPNGEERC
Sbjct: 5   IKEFFNSLLLKELFKGLALTGRYLFARKITVLFPEEKTPLSPRFRGLHALRRYPNGEERC 64

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEA+CPA AITIES  R   GTRRT RYDID+ KCI+CG C+EACPVDAIVE   
Sbjct: 65  IACKLCEAVCPALAITIESDQRDD-GTRRTTRYDIDLTKCIFCGFCEEACPVDAIVETHI 123

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            E+  E R +LY+ K+ LL  GDR+E EI  N   D+ YR
Sbjct: 124 LEYHGEKRGDLYFTKDMLLAVGDRFEPEIAANKAADAKYR 163


>gi|256821523|ref|YP_003145486.1| NADH dehydrogenase subunit I [Kangiella koreensis DSM 16069]
 gi|256795062|gb|ACV25718.1| NADH-quinone oxidoreductase, chain I [Kangiella koreensis DSM
           16069]
          Length = 163

 Score =  172 bits (436), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 90/163 (55%), Positives = 109/163 (66%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   R       L E      L   + +K K T+ YP E+   SPRFRG HALRRYPNGE
Sbjct: 1   MSRIRQIFRSYLLTELFRGLRLTWAHMWKRKVTVQYPEEQTPQSPRFRGIHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIE+GPR  DGTRRT RY+IDM KCIYCG C+E+CPVD+IVE
Sbjct: 61  ERCIACKLCEAVCPAAAITIEAGPRESDGTRRTTRYEIDMFKCIYCGFCEESCPVDSIVE 120

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
              F++  E R +    KE+LL  GDR+E++I  +   D+ YR
Sbjct: 121 TRVFDYHFEKRGDNILTKEQLLAIGDRYEAQIAEDRAKDAKYR 163


>gi|67459652|ref|YP_247276.1| NADH dehydrogenase subunit I [Rickettsia felis URRWXCal2]
 gi|75535952|sp|Q4UK24|NUOI_RICFE RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|67005185|gb|AAY62111.1| NADH dehydrogenase I chain I [Rickettsia felis URRWXCal2]
          Length = 159

 Score =  172 bits (435), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 108/160 (67%), Positives = 117/160 (73%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
               +   FL E V    L L+YFFK K TINYP+EK   SPRF+GEHALRRY NGEERC
Sbjct: 1   MINYLKSFFLYEIVRGMALTLKYFFKPKVTINYPYEKSPVSPRFKGEHALRRYENGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAI IE+  R   G+RRT RYDIDM KCIYCGLCQEACPVDAIVEGPN
Sbjct: 61  IACKLCEAICPAQAIVIEADERDD-GSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGPN 119

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FEFA+ T   L YDKERLL NGDRWE  +   +  D  YR
Sbjct: 120 FEFASLTHTALIYDKERLLQNGDRWEQALASKLHKDYEYR 159


>gi|217970164|ref|YP_002355398.1| NADH dehydrogenase subunit I [Thauera sp. MZ1T]
 gi|217507491|gb|ACK54502.1| NADH-quinone oxidoreductase, chain I [Thauera sp. MZ1T]
          Length = 161

 Score =  172 bits (435), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 96/159 (60%), Positives = 111/159 (69%), Gaps = 1/159 (0%)

Query: 5   RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64
           +  +  LFLKE V    L  R+FF+ K TI +P EK   S RFRG HALRRYPNGEERCI
Sbjct: 4   KDYIGSLFLKELVKGMALTGRHFFQRKITILFPEEKTPQSNRFRGLHALRRYPNGEERCI 63

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           ACKLCEAICPA AITIES  R   G+RRT RYDID+ KCI+CG C+EACPVDAIVE    
Sbjct: 64  ACKLCEAICPAMAITIESDQRDD-GSRRTTRYDIDLTKCIFCGFCEEACPVDAIVETRVL 122

Query: 125 EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           E+  E R +LYY K+ LL  GDR ES+I  +   D+ YR
Sbjct: 123 EYHGEQRGDLYYTKQMLLAVGDRHESQIAADRQQDAKYR 161


>gi|149246748|ref|XP_001527799.1| NADH-quinone oxidoreductase chain I [Lodderomyces elongisporus NRRL
           YB-4239]
 gi|146447753|gb|EDK42141.1| NADH-quinone oxidoreductase chain I [Lodderomyces elongisporus NRRL
           YB-4239]
          Length = 246

 Score =  172 bits (435), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 101/155 (65%), Positives = 121/155 (78%), Gaps = 1/155 (0%)

Query: 9   SFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKL 68
            + FL E     ++CL  +F++  TI YPFEKG  SPRFRGEHALRRYP+GEERCIACKL
Sbjct: 93  KYFFLSEIFRGMYICLEMYFRSPYTIYYPFEKGPISPRFRGEHALRRYPSGEERCIACKL 152

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
           CEAICPAQAITIE+  R   G+RRT +YDIDM KCIYCG CQE+CPVDAIVE PN E++T
Sbjct: 153 CEAICPAQAITIEAEERAD-GSRRTYKYDIDMTKCIYCGYCQESCPVDAIVESPNVEYST 211

Query: 129 ETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            TR+EL Y+KE+LL+NGD+WE E+   I  D+ YR
Sbjct: 212 ATREELLYNKEKLLDNGDKWEQELQYCIDADAAYR 246


>gi|126133937|ref|XP_001383493.1| mitochondrial complex I NUIM TYKY subunit (proton translocation)
           [Scheffersomyces stipitis CBS 6054]
 gi|126095642|gb|ABN65464.1| mitochondrial complex I NUIM TYKY subunit (proton translocation)
           [Scheffersomyces stipitis CBS 6054]
          Length = 226

 Score =  172 bits (435), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 102/160 (63%), Positives = 121/160 (75%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
                 F FL E     ++C+  +F++  TI YPFEKG  SPRFRGEHALRRYP+GEERC
Sbjct: 68  LSKATKFFFLSEIARGMYICMEMYFRSPYTIYYPFEKGPISPRFRGEHALRRYPSGEERC 127

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAITIE+  R   G+RRT +YDIDM KCIYCG CQE+CPVDAIVE PN
Sbjct: 128 IACKLCEAICPAQAITIEAEERID-GSRRTYKYDIDMTKCIYCGYCQESCPVDAIVESPN 186

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            E++T TR+EL Y+KE+LL NGD+WE E+   I  D+PYR
Sbjct: 187 VEYSTATREELLYNKEKLLENGDKWEQELQYCIDADAPYR 226


>gi|300691033|ref|YP_003752028.1| NADH-quinone oxidoreductase subunit I [Ralstonia solanacearum
           PSI07]
 gi|299078093|emb|CBJ50736.1| NADH-quinone oxidoreductase subunit I [Ralstonia solanacearum
           PSI07]
          Length = 163

 Score =  171 bits (434), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 95/160 (59%), Positives = 108/160 (67%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
            +   + L LKE      L  RY F  K T+ +P EK   SPRFRG HALRRYPNGEERC
Sbjct: 5   IKEFFNSLLLKELFKGLALTGRYLFARKITVLFPEEKTPLSPRFRGLHALRRYPNGEERC 64

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEA+CPA AITIES  R   GTRRT RYDID+ KCI+CG C+EACPVDAIVE   
Sbjct: 65  IACKLCEAVCPALAITIESDLRDD-GTRRTTRYDIDLTKCIFCGFCEEACPVDAIVETHI 123

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            E+  E R +LY+ KE LL  GDR+E EI  N   D+ YR
Sbjct: 124 LEYHGEKRGDLYFTKEMLLAVGDRFEPEIAANKAADAKYR 163


>gi|33592015|ref|NP_879659.1| NADH dehydrogenase subunit I [Bordetella pertussis Tohama I]
 gi|33602808|ref|NP_890368.1| NADH dehydrogenase subunit I [Bordetella bronchiseptica RB50]
 gi|81425357|sp|Q7VZP7|NUOI_BORPE RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|81429893|sp|Q7WCU7|NUOI_BORBR RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|158958056|sp|Q7W5B5|NUOI_BORPA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|33571659|emb|CAE41152.1| NADH-ubiquinone oxidoreductase, chain I [Bordetella pertussis
           Tohama I]
 gi|33577250|emb|CAE35807.1| NADH-ubiquinone oxidoreductase, chain I [Bordetella bronchiseptica
           RB50]
 gi|332381431|gb|AEE66278.1| NADH dehydrogenase subunit I [Bordetella pertussis CS]
          Length = 162

 Score =  171 bits (434), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 95/163 (58%), Positives = 111/163 (68%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   +     L L E      L  +YFFK K T+ YP EK  TS RFRG HALRRYPNGE
Sbjct: 1   MEAIKDFFGSLLLTELFKGLRLTGKYFFKRKVTLRYPMEKTPTSARFRGLHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIES  R   GTRRT RYDID+ KCI+CG C+E+CPVD+IVE
Sbjct: 61  ERCIACKLCEAVCPALAITIESEQRDD-GTRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               E+  E R +LY+ K+ LL  GDR+E+EI R    D+PYR
Sbjct: 120 THIHEYHGEKRGDLYFTKDMLLAVGDRYEAEIARRRAEDAPYR 162


>gi|238650815|ref|YP_002916670.1| NADH dehydrogenase subunit I [Rickettsia peacockii str. Rustic]
 gi|259514787|sp|C4K221|NUOI_RICPU RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|238624913|gb|ACR47619.1| NADH dehydrogenase subunit I [Rickettsia peacockii str. Rustic]
          Length = 159

 Score =  171 bits (434), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 109/160 (68%), Positives = 118/160 (73%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
               +   FL E V    L L+YFFK K TINYP+EK   SPRF+GEHALRRY NGEERC
Sbjct: 1   MINYLKSFFLYEIVRGMALTLKYFFKPKVTINYPYEKSPISPRFKGEHALRRYENGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAI IE+  R  DG+RRT RYDIDM KCIYCGLCQEACPVDAIVEGPN
Sbjct: 61  IACKLCEAICPAQAIVIEADER-EDGSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGPN 119

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FEFA+ T   L YDKERLL NGDRWE  +   +  D  YR
Sbjct: 120 FEFASLTHTALIYDKERLLQNGDRWEQALASKLHKDYEYR 159


>gi|15604627|ref|NP_221145.1| NADH dehydrogenase subunit I [Rickettsia prowazekii str. Madrid E]
 gi|6647675|sp|Q9ZCF8|NUOI_RICPR RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|3861322|emb|CAA15221.1| NADH DEHYDROGENASE I CHAIN I (nuoI) [Rickettsia prowazekii]
 gi|292572444|gb|ADE30359.1| NADH dehydrogenase I chain I [Rickettsia prowazekii Rp22]
          Length = 159

 Score =  171 bits (434), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 108/160 (67%), Positives = 118/160 (73%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
               +   FL E +    L L+YFFK K TINYP+EK   SPRF+GEHALRRY NGEERC
Sbjct: 1   MINYLKSFFLYEIIRGMTLTLKYFFKPKVTINYPYEKSPVSPRFKGEHALRRYENGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAI IES  R   G+RRT RYDIDM KCIYCGLCQEACPVDAIVEGPN
Sbjct: 61  IACKLCEAICPAQAIVIESDERDD-GSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGPN 119

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FEFA+ T   L YDKERLLNNGD+WE  +   +  D  YR
Sbjct: 120 FEFASLTHTALIYDKERLLNNGDKWEQALANKLHKDYQYR 159


>gi|30249729|ref|NP_841799.1| NADH dehydrogenase subunit I [Nitrosomonas europaea ATCC 19718]
 gi|75540328|sp|Q82TV1|NUOI_NITEU RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|30180766|emb|CAD85680.1| nuoI; NADH dehydrogenase I (chain I) oxidoreductase protein
           [Nitrosomonas europaea ATCC 19718]
          Length = 162

 Score =  171 bits (434), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 95/163 (58%), Positives = 109/163 (66%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   +       L E +    +  RY F  K T++YP EK   SPRFRG HALRRYPNGE
Sbjct: 1   MERIKQFFKSFLLVEMLKGMKVTGRYLFAPKITVHYPEEKTPQSPRFRGLHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIES  R    TRRT RYDIDMIKCI+CG C+EACPVDAIVE
Sbjct: 61  ERCIACKLCEAVCPAMAITIESEQRDDS-TRRTTRYDIDMIKCIFCGFCEEACPVDAIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               E+  E R +L Y KE LL  GDR+E +I R+   D+PYR
Sbjct: 120 TRVLEYHGEVRGDLTYTKEMLLAVGDRYEEQIARDRAADAPYR 162


>gi|300703650|ref|YP_003745252.1| NADH-quinone oxidoreductase subunit i [Ralstonia solanacearum
           CFBP2957]
 gi|299071313|emb|CBJ42631.1| NADH-quinone oxidoreductase subunit I [Ralstonia solanacearum
           CFBP2957]
          Length = 163

 Score =  171 bits (434), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 94/160 (58%), Positives = 108/160 (67%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
            +   + L LKE      L  RY F  K T+ +P EK   SPRFRG HALRRYPNGEERC
Sbjct: 5   IKEFFNSLLLKELFKGLALTGRYLFARKITVFFPEEKTPLSPRFRGLHALRRYPNGEERC 64

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEA+CPA AITIES  R   GTRRT RYDID+ KCI+CG C+EACPVDAIVE   
Sbjct: 65  IACKLCEAVCPALAITIESDQRDD-GTRRTTRYDIDLTKCIFCGFCEEACPVDAIVETHI 123

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            E+  E R +LY+ K+ LL  GDR+E EI  N   D+ YR
Sbjct: 124 LEYHGEKRGDLYFTKDMLLAVGDRFEPEIAANKAADAKYR 163


>gi|325184975|emb|CCA19467.1| NADH dehydrogenase putative [Albugo laibachii Nc14]
          Length = 202

 Score =  171 bits (434), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 107/161 (66%), Positives = 122/161 (75%), Gaps = 1/161 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           IF    +  FL +   A +L      + K T+NYPFEK   SPRFRGEHALRRYP+GEER
Sbjct: 43  IFDKLANTFFLGDVARATWLAWEVHLEKKVTVNYPFEKNYLSPRFRGEHALRRYPSGEER 102

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCEAICPAQAITIE+  R   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGP
Sbjct: 103 CIACKLCEAICPAQAITIEAEARAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 161

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           NFEFATET +EL YDK +LL NGD+WE EI +N+ ++  YR
Sbjct: 162 NFEFATETHEELLYDKAKLLANGDKWEFEIAQNLASEQLYR 202


>gi|229587157|ref|YP_002845658.1| NADH dehydrogenase subunit I [Rickettsia africae ESF-5]
 gi|259514784|sp|C3PLS5|NUOI_RICAE RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|228022207|gb|ACP53915.1| NADH dehydrogenase I chain I [Rickettsia africae ESF-5]
          Length = 159

 Score =  171 bits (433), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 109/160 (68%), Positives = 118/160 (73%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
               +   FL E V    L L+YFFK K TINYP+EK   SPRF+GEHALRRY NGEERC
Sbjct: 1   MIHYLKSFFLYEIVRGMALTLKYFFKPKVTINYPYEKSPISPRFKGEHALRRYENGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAI IE+  R  DG+RRT RYDIDM KCIYCGLCQEACPVDAIVEGPN
Sbjct: 61  IACKLCEAICPAQAIVIEADER-EDGSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGPN 119

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FEFA+ T   L YDKERLL NGDRWE  +   +  D  YR
Sbjct: 120 FEFASLTHTALIYDKERLLQNGDRWEQALASKLRKDYEYR 159


>gi|212218221|ref|YP_002305008.1| NADH dehydrogenase subunit I [Coxiella burnetii CbuK_Q154]
 gi|212012483|gb|ACJ19863.1| NADH-quinone oxidoreductase chain I [Coxiella burnetii CbuK_Q154]
          Length = 168

 Score =  171 bits (433), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 91/163 (55%), Positives = 109/163 (66%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           MR  +  +    L E +    L LRYF++ K TI+YP E+  +S RFRG  ALRRYPNGE
Sbjct: 6   MRRLKQIIKSFTLWELLKGLSLTLRYFYRKKVTIHYPDEEVPSSFRFRGMLALRRYPNGE 65

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA CPA AITIE+GPR  DG+RRT  YDID  KCI CG C+EACPVDAIV 
Sbjct: 66  ERCIACKLCEAFCPACAITIEAGPREADGSRRTTLYDIDAFKCINCGFCEEACPVDAIVL 125

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            P   ++ + R E    KE+LL  GDR+E +I R+   D  YR
Sbjct: 126 TPEMHYSIKDRGENILTKEKLLMIGDRYEEQIARDRAKDKKYR 168


>gi|253996965|ref|YP_003049029.1| NADH dehydrogenase subunit I [Methylotenera mobilis JLW8]
 gi|253983644|gb|ACT48502.1| NADH-quinone oxidoreductase, chain I [Methylotenera mobilis JLW8]
          Length = 164

 Score =  171 bits (433), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 88/162 (54%), Positives = 107/162 (66%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
           +  +  +  L L E +    L  RYFF  K T+ YP E    S RFRG HALRRYPNGEE
Sbjct: 3   KSIKQTLGSLMLWELLKGMALTGRYFFAPKITVQYPEENTPQSNRFRGLHALRRYPNGEE 62

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLCEA+CPA AITIES  R  D TRRT RYDID+ KCI+CG+C+E+CPVD+IVE 
Sbjct: 63  RCIACKLCEAVCPAMAITIESEQREDDKTRRTTRYDIDLTKCIFCGMCEESCPVDSIVET 122

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
             F++  E R +L Y KE LL  GD+ E +I  +   D  +R
Sbjct: 123 RVFDYHGEQRGDLIYTKEMLLAVGDKHEKQIAADRAQDKSFR 164


>gi|91204918|ref|YP_537273.1| NADH dehydrogenase subunit I [Rickettsia bellii RML369-C]
 gi|157827755|ref|YP_001496819.1| NADH dehydrogenase subunit I [Rickettsia bellii OSU 85-389]
 gi|110287771|sp|Q1RKD0|NUOI_RICBR RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|226737412|sp|A8GY32|NUOI_RICB8 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|91068462|gb|ABE04184.1| NADH dehydrogenase I chain I [Rickettsia bellii RML369-C]
 gi|157803059|gb|ABV79782.1| NADH dehydrogenase subunit I [Rickettsia bellii OSU 85-389]
          Length = 159

 Score =  171 bits (433), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 108/160 (67%), Positives = 119/160 (74%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
               +   FL E +    L L+YFFKAK TINYP+EK   SPRF+GEHALRRY NGEERC
Sbjct: 1   MINYLKSFFLYEIIRGLALTLKYFFKAKVTINYPYEKSPVSPRFKGEHALRRYENGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAI IE+  R  DG+RRT RYDIDM KCIYCGLCQEACPVDAIVEGPN
Sbjct: 61  IACKLCEAICPAQAIVIEADER-EDGSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGPN 119

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FEFA+ T   L YDKE+LL NGDRWE  +   +  D  YR
Sbjct: 120 FEFASLTHTALIYDKEKLLQNGDRWEQALANKLHKDYEYR 159


>gi|190358907|sp|A8F2T4|NUOI_RICM5 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
          Length = 159

 Score =  171 bits (433), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 108/160 (67%), Positives = 117/160 (73%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
               +   FL E V    L L+YFFK K TINYP+EK   SPRF+GEHALRRY NGEERC
Sbjct: 1   MINYLKSFFLYEIVRGMALTLKYFFKPKVTINYPYEKSPVSPRFKGEHALRRYENGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAI IE+  R  DG+RRT RYDIDM KCIYCGLCQ ACPVDAIVEGPN
Sbjct: 61  IACKLCEAICPAQAIVIEADER-EDGSRRTTRYDIDMTKCIYCGLCQAACPVDAIVEGPN 119

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FEFA+ T   L YDKERLL NGDRWE  +   +  D  YR
Sbjct: 120 FEFASLTHTALIYDKERLLQNGDRWEQALASKLHKDYEYR 159


>gi|322780735|gb|EFZ09992.1| hypothetical protein SINV_04706 [Solenopsis invicta]
          Length = 286

 Score =  171 bits (432), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 109/160 (68%), Positives = 124/160 (77%), Gaps = 1/160 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           I     + +F+ E +  F + L   F+   TINYPFEKG  SPRFRGEHALRRYP+GEER
Sbjct: 49  IMEAATTHMFVLELIRGFGIVLSQVFREPATINYPFEKGPLSPRFRGEHALRRYPSGEER 108

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCEAICPAQAITIE+  R   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGP
Sbjct: 109 CIACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMSKCIYCGFCQEACPVDAIVEGP 167

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPY 162
           NFEF+TET +E+ Y+KE+LLNNGD+WESEI  NI  D  Y
Sbjct: 168 NFEFSTETHEEMLYNKEKLLNNGDKWESEIASNIHADHLY 207


>gi|312222247|emb|CBY02187.1| hypothetical protein [Leptosphaeria maculans]
          Length = 230

 Score =  171 bits (432), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 103/160 (64%), Positives = 119/160 (74%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
                 +  L E     ++ L  +F+   TI YPFEKG  SPRFRGEHALRRYP GEERC
Sbjct: 72  LDRAGKYFLLLEMFRGMYVSLEQYFRPPYTIFYPFEKGPVSPRFRGEHALRRYPTGEERC 131

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAITIE+  R   G+RRT RYDIDM KCIYCGLCQE+CPVDAIVEGPN
Sbjct: 132 IACKLCEAICPAQAITIEAEERMD-GSRRTTRYDIDMTKCIYCGLCQESCPVDAIVEGPN 190

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            E+AT TR+EL Y+KE+LL+NGD+WE E+      D+PYR
Sbjct: 191 TEYATTTREELLYNKEKLLSNGDKWEPELAAAARADAPYR 230


>gi|311104666|ref|YP_003977519.1| NADH-quinone oxidoreductase subunit 9 [Achromobacter xylosoxidans
           A8]
 gi|310759355|gb|ADP14804.1| NADH-quinone oxidoreductase subunit 9 [Achromobacter xylosoxidans
           A8]
          Length = 162

 Score =  171 bits (432), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 94/163 (57%), Positives = 112/163 (68%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   +     L L E +    L  +YFFK K T+ YP EK   SPRFRG HALRRYPNGE
Sbjct: 1   MEAIKDFFGSLMLTELLKGMRLTGKYFFKRKVTLRYPQEKTPASPRFRGLHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIES  R   GTRRT RYDID+ KCI+CG C+E+CPVD+IVE
Sbjct: 61  ERCIACKLCEAVCPALAITIESDQRDD-GTRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               E+  E R +LY+ K+ LL  GDR+E++I R    D+PYR
Sbjct: 120 THIHEYHGEKRGDLYFTKDMLLAVGDRYEADIARRRAEDAPYR 162


>gi|209363825|ref|YP_001423965.2| NADH dehydrogenase subunit I [Coxiella burnetii Dugway 5J108-111]
 gi|215919184|ref|NP_820423.2| NADH dehydrogenase subunit I [Coxiella burnetii RSA 493]
 gi|206584068|gb|AAO90937.2| NADH-quinone oxidoreductase chain I [Coxiella burnetii RSA 493]
 gi|207081758|gb|ABS78476.2| NADH-quinone oxidoreductase chain I [Coxiella burnetii Dugway
           5J108-111]
          Length = 168

 Score =  171 bits (432), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 91/163 (55%), Positives = 110/163 (67%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           MR  +  +    L E +    L LRYF++ K TI+YP E+  +S RFRG  ALRRYPNGE
Sbjct: 6   MRRLKQIIKSFTLWELLKGLSLTLRYFYRKKVTIHYPDEEVPSSFRFRGMLALRRYPNGE 65

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIE+GPR  DG+RRT  YDID  KCI CG C+EACPVDAIV 
Sbjct: 66  ERCIACKLCEAVCPACAITIEAGPREADGSRRTTLYDIDAFKCINCGFCEEACPVDAIVL 125

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            P   ++ + R E    KE+LL  GDR+E +I R+   D  YR
Sbjct: 126 TPEMHYSIKDRGENILTKEKLLMIGDRYEEQIARDRAKDKKYR 168


>gi|15893152|ref|NP_360866.1| NADH dehydrogenase subunit I [Rickettsia conorii str. Malish 7]
 gi|20139030|sp|Q92G94|NUOI_RICCN RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|15620362|gb|AAL03767.1| NADH dehydrogenase I chain I [Rickettsia conorii str. Malish 7]
          Length = 159

 Score =  171 bits (432), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 109/160 (68%), Positives = 118/160 (73%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
               +   FL E V    L L+YFFK K TINYP+EK   SPRF+GEHALRRY NGEERC
Sbjct: 1   MINYLKSFFLYEIVRGMVLTLKYFFKPKVTINYPYEKSPISPRFKGEHALRRYENGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAI IE+  R  DG+RRT RYDIDM KCIYCGLCQEACPVDAIVEGPN
Sbjct: 61  IACKLCEAICPAQAIVIEADER-EDGSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGPN 119

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FEFA+ T   L YDKERLL NGDRWE  +   +  D  YR
Sbjct: 120 FEFASLTHTALIYDKERLLQNGDRWEQALASKLHKDYEYR 159


>gi|239946812|ref|ZP_04698565.1| NADH-quinone oxidoreductase subunit I [Rickettsia endosymbiont of
           Ixodes scapularis]
 gi|239921088|gb|EER21112.1| NADH-quinone oxidoreductase subunit I [Rickettsia endosymbiont of
           Ixodes scapularis]
          Length = 159

 Score =  171 bits (432), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 106/160 (66%), Positives = 116/160 (72%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
               +   FL E V    L L+YFFK K TINYP+EK   SPRF+GEHALRRY NGEERC
Sbjct: 1   MINYLKSFFLYEIVRGMALTLKYFFKPKVTINYPYEKSPVSPRFKGEHALRRYENGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAI IE+  R   G+RRT RYDIDM KCIYCGLCQEACPVDAIVEGPN
Sbjct: 61  IACKLCEAICPAQAIVIEADERDD-GSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGPN 119

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FEF + T   L YDKERLL NGD+WE  +   +  D  YR
Sbjct: 120 FEFTSLTHTALIYDKERLLQNGDKWEQALASKLHKDYEYR 159


>gi|317401996|gb|EFV82596.1| NADH-quinone oxidoreductase subunit I [Achromobacter xylosoxidans
           C54]
          Length = 162

 Score =  170 bits (431), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 95/163 (58%), Positives = 112/163 (68%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   +     L L E +    L  +YFFK K T+ YP EK  TS RFRG HALRRYPNGE
Sbjct: 1   MEAIKDFFGSLMLAELLKGMRLTGKYFFKRKVTLRYPQEKTPTSARFRGLHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIES  R   GTRRT RYDID+ KCI+CG C+E+CPVD+IVE
Sbjct: 61  ERCIACKLCEAVCPALAITIESDQRDD-GTRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               E+  E R +LY+ K+ LL  GDR+E+EI R    D+PYR
Sbjct: 120 THIHEYHGEKRGDLYFTKDMLLAVGDRYEAEIARRRAEDAPYR 162


>gi|153207231|ref|ZP_01945995.1| NADH dehydrogenase (ubiquinone), I subunit [Coxiella burnetii 'MSU
           Goat Q177']
 gi|165918772|ref|ZP_02218858.1| NADH dehydrogenase (ubiquinone), I subunit [Coxiella burnetii RSA
           334]
 gi|120576719|gb|EAX33343.1| NADH dehydrogenase (ubiquinone), I subunit [Coxiella burnetii 'MSU
           Goat Q177']
 gi|165917496|gb|EDR36100.1| NADH dehydrogenase (ubiquinone), I subunit [Coxiella burnetii RSA
           334]
          Length = 163

 Score =  170 bits (431), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 91/163 (55%), Positives = 109/163 (66%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           MR  +  +    L E +    L LRYF++ K TI+YP E+  +S RFRG  ALRRYPNGE
Sbjct: 1   MRRLKQIIKSFTLWELLKGLSLTLRYFYRKKVTIHYPDEEVPSSFRFRGMLALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA CPA AITIE+GPR  DG+RRT  YDID  KCI CG C+EACPVDAIV 
Sbjct: 61  ERCIACKLCEAFCPACAITIEAGPREADGSRRTTLYDIDAFKCINCGFCEEACPVDAIVL 120

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            P   ++ + R E    KE+LL  GDR+E +I R+   D  YR
Sbjct: 121 TPEMHYSIKDRGENILTKEKLLMIGDRYEEQIARDRAKDKKYR 163


>gi|157826248|ref|YP_001493968.1| NADH dehydrogenase subunit I [Rickettsia akari str. Hartford]
 gi|226737411|sp|A8GPY5|NUOI_RICAH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|157800206|gb|ABV75460.1| NADH dehydrogenase subunit I [Rickettsia akari str. Hartford]
          Length = 159

 Score =  170 bits (431), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 107/160 (66%), Positives = 118/160 (73%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
               +   FL E +    L L+YFFK K TINYP+EK   SPRF+GEHALRRY +GEERC
Sbjct: 1   MINYLKSFFLYEIIRGMSLTLKYFFKPKVTINYPYEKSHVSPRFKGEHALRRYESGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAI IE+  R  DG+RRT RYDIDM KCIYCGLCQEACPVDAIVEGPN
Sbjct: 61  IACKLCEAICPAQAIVIEADER-EDGSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGPN 119

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FEFA+ T   L YDKERLL NGDRWE  +   +  D  YR
Sbjct: 120 FEFASLTHAALIYDKERLLQNGDRWEQALASKLHKDYEYR 159


>gi|226939464|ref|YP_002794537.1| NADH dehydrogenase subunit I [Laribacter hongkongensis HLHK9]
 gi|226714390|gb|ACO73528.1| NuoI [Laribacter hongkongensis HLHK9]
          Length = 160

 Score =  170 bits (431), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 88/161 (54%), Positives = 106/161 (65%), Gaps = 1/161 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           + +       L E V    +  R+ F  K T+ YP E+   SPRFRG HA RRYPNGEER
Sbjct: 1   MIKQFFKTFLLAELVKGMTVTGRHLFSRKITVQYPEERTPVSPRFRGLHAQRRYPNGEER 60

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCEA+CPA AITI+S  R   GTRRT RY+ID  KCI+CG C+EACP DAIVE  
Sbjct: 61  CIACKLCEAVCPAMAITIDSEQRAD-GTRRTTRYEIDYQKCIFCGFCEEACPTDAIVETH 119

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            FEF  E + +LYY K  LL  GD++E+EI +N   D+ YR
Sbjct: 120 IFEFHGEKKGDLYYTKPMLLAIGDQYEAEIAKNRELDAKYR 160


>gi|186920127|ref|YP_001874781.1| NADH dehydrogenase subunit 8 [Hemiselmis andersenii]
 gi|186461073|gb|ACC78235.1| NADH dehydrogenase subunit 8 [Hemiselmis andersenii]
          Length = 163

 Score =  170 bits (431), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 109/164 (66%), Positives = 127/164 (77%), Gaps = 2/164 (1%)

Query: 1   MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59
           M+         L+L E     ++ L+YFF+ K T+NYPFEKG+ S RFRGEH LRRY +G
Sbjct: 1   MKNYLDNTTRILYLSELCRGLWITLQYFFRRKVTLNYPFEKGALSSRFRGEHVLRRYESG 60

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           EERCIACKLCEA+CPAQAITIE+ PR   G+RRT RYDIDM KCI+CG CQEACPVDAIV
Sbjct: 61  EERCIACKLCEAVCPAQAITIEAEPRYD-GSRRTTRYDIDMTKCIFCGFCQEACPVDAIV 119

Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           EGPNFE+ATET +EL Y+KE+LL NGDRWE EI  NI T+S YR
Sbjct: 120 EGPNFEYATETHEELLYNKEKLLKNGDRWEIEIQANIATESFYR 163


>gi|51473963|ref|YP_067720.1| NADH dehydrogenase subunit I [Rickettsia typhi str. Wilmington]
 gi|81389938|sp|Q68VV4|NUOI_RICTY RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|51460275|gb|AAU04238.1| NADH dehydrogenase (ubiquinone) subunit I [Rickettsia typhi str.
           Wilmington]
          Length = 159

 Score =  170 bits (431), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 108/160 (67%), Positives = 118/160 (73%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
               +   FL E V    L L+YFFK K TINYP+EK   SPRF+GEHALRRY NGEERC
Sbjct: 1   MINYLKSFFLYEIVRGLTLTLKYFFKPKVTINYPYEKSPVSPRFKGEHALRRYENGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEA+CPAQAI IES  R   G+RRT RYDIDM KCIYCGLCQEACPVDAIVEGPN
Sbjct: 61  IACKLCEAVCPAQAIVIESDERDD-GSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGPN 119

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FEFA+ T   L YDKERLL NGD+WE E+   +  D  YR
Sbjct: 120 FEFASLTHTALIYDKERLLYNGDKWEQELTNKLHKDYQYR 159


>gi|157829061|ref|YP_001495303.1| NADH dehydrogenase subunit I [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165933787|ref|YP_001650576.1| NADH dehydrogenase subunit I [Rickettsia rickettsii str. Iowa]
 gi|226737414|sp|B0BVB0|NUOI_RICRO RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|226737415|sp|A8GTS0|NUOI_RICRS RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|157801542|gb|ABV76795.1| NADH dehydrogenase subunit I [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165908874|gb|ABY73170.1| NADH-quinone oxidoreductase chain I [Rickettsia rickettsii str.
           Iowa]
          Length = 159

 Score =  170 bits (431), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 108/160 (67%), Positives = 118/160 (73%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
               +   FL E V    L L+YFFK K TINYP+EK   SPRF+GEHALRRY +GEERC
Sbjct: 1   MINYLKSFFLYEIVRGMALTLKYFFKPKVTINYPYEKSPISPRFKGEHALRRYEHGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAI IE+  R  DG+RRT RYDIDM KCIYCGLCQEACPVDAIVEGPN
Sbjct: 61  IACKLCEAICPAQAIVIEADER-EDGSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGPN 119

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FEFA+ T   L YDKERLL NGDRWE  +   +  D  YR
Sbjct: 120 FEFASLTHTALIYDKERLLQNGDRWEQALASKLHKDYEYR 159


>gi|295689616|ref|YP_003593309.1| NADH-quinone oxidoreductase subunit I [Caulobacter segnis ATCC
           21756]
 gi|295431519|gb|ADG10691.1| NADH-quinone oxidoreductase, chain I [Caulobacter segnis ATCC
           21756]
          Length = 163

 Score =  170 bits (430), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 113/160 (70%), Positives = 128/160 (80%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
               V    L +F GAF L ++Y    K T+ YP E+   SPRFRGEHALRRYP+GEERC
Sbjct: 5   ITQAVKGAALLDFAGAFGLAMKYMVAPKKTVIYPNERNPQSPRFRGEHALRRYPSGEERC 64

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEA+CPAQAITIE+ PR  DG+RRT RYDIDM+KCIYCGLCQEACPVDAIVEGPN
Sbjct: 65  IACKLCEAVCPAQAITIEAEPR-EDGSRRTTRYDIDMVKCIYCGLCQEACPVDAIVEGPN 123

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            EFATETR+ELYYDKERLL+NGDRWE  I +N+  D+PYR
Sbjct: 124 IEFATETREELYYDKERLLDNGDRWERLIAKNLELDAPYR 163


>gi|212212190|ref|YP_002303126.1| NADH dehydrogenase subunit I [Coxiella burnetii CbuG_Q212]
 gi|212010600|gb|ACJ17981.1| NADH-quinone oxidoreductase chain I [Coxiella burnetii CbuG_Q212]
          Length = 168

 Score =  170 bits (430), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 90/163 (55%), Positives = 109/163 (66%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           MR  +  +    L E +    L LRYF++ K TI+YP E+  +S RFRG  ALRRYPNGE
Sbjct: 6   MRRLKQIIKSFTLWELLKGLSLTLRYFYRKKVTIHYPDEEVPSSFRFRGMLALRRYPNGE 65

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIE+GPR  DG+RRT  YDID  KCI CG C+EACPVDAIV 
Sbjct: 66  ERCIACKLCEAVCPACAITIEAGPREADGSRRTTLYDIDAFKCINCGFCEEACPVDAIVL 125

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            P   ++ + R      KE+LL  GDR+E +I R+   D  YR
Sbjct: 126 TPEMHYSIKDRGGNILTKEKLLMIGDRYEEQIARDRAKDKKYR 168


>gi|293603927|ref|ZP_06686342.1| NADH-quinone oxidoreductase subunit I [Achromobacter piechaudii
           ATCC 43553]
 gi|292817764|gb|EFF76830.1| NADH-quinone oxidoreductase subunit I [Achromobacter piechaudii
           ATCC 43553]
          Length = 162

 Score =  170 bits (430), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 95/163 (58%), Positives = 113/163 (69%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   +     L L E +    L  +YFFK K T+ YP EK  TS RFRG HALRRYPNGE
Sbjct: 1   MEAIKDFFGSLMLTELLKGMRLTGKYFFKRKVTLRYPQEKTPTSARFRGLHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIES  R  DGTRRT RYDID+ KCI+CG C+E+CPVD+IVE
Sbjct: 61  ERCIACKLCEAVCPALAITIESDQR-EDGTRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               E+  E R +LY+ K+ LL  GDR+E++I R    D+PYR
Sbjct: 120 THIHEYHGEKRGDLYFTKDMLLAVGDRYEADIARRRADDAPYR 162


>gi|163855995|ref|YP_001630293.1| NADH dehydrogenase subunit I [Bordetella petrii DSM 12804]
 gi|163259723|emb|CAP42024.1| NADH-ubiquinone oxidoreductase, chain I [Bordetella petrii]
          Length = 162

 Score =  170 bits (430), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 94/163 (57%), Positives = 111/163 (68%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   +     L L E +    L  +YFFK K T+ YP EK   S RFRG HALRRYPNGE
Sbjct: 1   MEAIKDFFGSLMLAELLKGMRLTGKYFFKRKVTLRYPMEKTPISARFRGLHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIES  R   GTRRT RYDID+ KCI+CG C+E+CPVD+IVE
Sbjct: 61  ERCIACKLCEAVCPALAITIESDQRDD-GTRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               E+  E R +LY+ K+ LL  GDR+E+EI R    D+PYR
Sbjct: 120 THIHEYHGEKRGDLYFTKDMLLAVGDRYEAEIARRRAEDAPYR 162


>gi|161830697|ref|YP_001597284.1| NADH dehydrogenase subunit I [Coxiella burnetii RSA 331]
 gi|81722524|sp|Q83BR3|NUOI_COXBU RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|189030927|sp|A9KBL3|NUOI_COXBN RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|189030928|sp|A9N8W4|NUOI_COXBR RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|161762564|gb|ABX78206.1| NADH dehydrogenase (ubiquinone), I subunit [Coxiella burnetii RSA
           331]
          Length = 163

 Score =  169 bits (429), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 91/163 (55%), Positives = 110/163 (67%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           MR  +  +    L E +    L LRYF++ K TI+YP E+  +S RFRG  ALRRYPNGE
Sbjct: 1   MRRLKQIIKSFTLWELLKGLSLTLRYFYRKKVTIHYPDEEVPSSFRFRGMLALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIE+GPR  DG+RRT  YDID  KCI CG C+EACPVDAIV 
Sbjct: 61  ERCIACKLCEAVCPACAITIEAGPREADGSRRTTLYDIDAFKCINCGFCEEACPVDAIVL 120

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            P   ++ + R E    KE+LL  GDR+E +I R+   D  YR
Sbjct: 121 TPEMHYSIKDRGENILTKEKLLMIGDRYEEQIARDRAKDKKYR 163


>gi|145589226|ref|YP_001155823.1| NADH dehydrogenase subunit I [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|145047632|gb|ABP34259.1| NADH dehydrogenase subunit I [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 163

 Score =  169 bits (429), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 90/162 (55%), Positives = 109/162 (67%), Gaps = 1/162 (0%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
           +     +  L LK+ +    +  RY FK K TI YP EK   S RFRG HALRRY NGEE
Sbjct: 3   KKISQFLDSLMLKDILTGMSITGRYLFKPKITIQYPEEKTPLSNRFRGLHALRRYENGEE 62

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCI CKLCEA+CPA AITIE+  R   GTRRT RYDID+ KCI+CG C+EACPVDAIVE 
Sbjct: 63  RCIGCKLCEAVCPAYAITIETAERDD-GTRRTSRYDIDLTKCIFCGFCEEACPVDAIVET 121

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
             FE+  + R +LY+ K+ LL  GD++E +I  N   D+PYR
Sbjct: 122 NIFEYFGDKRGDLYFTKDMLLAVGDKYEKDIAVNRAIDAPYR 163


>gi|332285009|ref|YP_004416920.1| NADH dehydrogenase subunit I [Pusillimonas sp. T7-7]
 gi|330428962|gb|AEC20296.1| NADH dehydrogenase subunit I [Pusillimonas sp. T7-7]
          Length = 162

 Score =  169 bits (429), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 95/163 (58%), Positives = 111/163 (68%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   +     L L E +    L  +YFFK K T+ YP EK  TS RFRG HALRRYPNGE
Sbjct: 1   MEAIKDFFGSLMLSEMLKGMRLTGKYFFKRKVTLRYPQEKTPTSARFRGLHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AI+IES  R   GTRRT RYDID+ KCI+CG C+E+CPVD+IVE
Sbjct: 61  ERCIACKLCEAVCPALAISIESEERDD-GTRRTTRYDIDLAKCIFCGFCEESCPVDSIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               E+  E R +LYY K+ LL  GDR+E EI R    D+PYR
Sbjct: 120 THILEYHGEKRGDLYYTKDMLLAIGDRYEPEIARRRSEDAPYR 162


>gi|171463534|ref|YP_001797647.1| NADH-quinone oxidoreductase, chain I [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171193072|gb|ACB44033.1| NADH-quinone oxidoreductase, chain I [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 163

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 90/162 (55%), Positives = 109/162 (67%), Gaps = 1/162 (0%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
           +     +  L LK+ +    +  RY FK K T+ YP EK   S RFRG HALRRY NGEE
Sbjct: 3   KNISQFLDSLMLKDILTGMSITGRYLFKPKITVQYPDEKTPLSNRFRGLHALRRYENGEE 62

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCI CKLCEA+CPA AITIE+  R   GTRRT RYDID+ KCI+CG C+EACPVDAIVE 
Sbjct: 63  RCIGCKLCEAVCPAYAITIETAERDD-GTRRTSRYDIDLTKCIFCGFCEEACPVDAIVET 121

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
             FE+  + R +LY+ K+ LL  GDR+E +I  N   D+PYR
Sbjct: 122 NIFEYFGDKRGDLYFTKDMLLAVGDRYEKDISANRAIDAPYR 163


>gi|23394377|gb|AAN31478.1| NADH dehydrogenase [Phytophthora infestans]
          Length = 211

 Score =  169 bits (429), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 106/161 (65%), Positives = 120/161 (74%), Gaps = 1/161 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           +        FL +   A +L      + K TINYP+EKG  SPRFRGEHALRRYP+GEER
Sbjct: 52  VIEKMSDTFFLSDVFRATWLAWEVHVERKVTINYPYEKGMLSPRFRGEHALRRYPSGEER 111

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCEAICPAQAITIE+ PR   G RRT RYDIDM KCIYCG CQEACPVDAIVEGP
Sbjct: 112 CIACKLCEAICPAQAITIEAEPRAD-GARRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 170

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           NFEFATE+ +EL YDK +LL NGD+WE EI +N+  +  YR
Sbjct: 171 NFEFATESHEELLYDKAKLLANGDKWEFEIAKNLSVEQLYR 211


>gi|82702228|ref|YP_411794.1| NADH dehydrogenase subunit I [Nitrosospira multiformis ATCC 25196]
 gi|115502511|sp|Q2YA19|NUOI2_NITMU RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName:
           Full=NADH dehydrogenase I subunit I 2; AltName:
           Full=NDH-1 subunit I 2
 gi|82410293|gb|ABB74402.1| NADH dehydrogenase subunit I [Nitrosospira multiformis ATCC 25196]
          Length = 162

 Score =  169 bits (428), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 89/163 (54%), Positives = 107/163 (65%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   +       L E +    L  R  F  K T+ +P EK   SPRFRG HALRRYPNGE
Sbjct: 1   MNRIKDFFRTFLLFELIKGMMLTGRNMFARKITVYFPEEKTPQSPRFRGLHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIES  R  DGTRRT RYDID+ KCI+CG C+E+CPVD+IVE
Sbjct: 61  ERCIACKLCEAVCPALAITIESEQR-EDGTRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               E+  E R +L Y K+ LL  GDR+E +I ++   D+ YR
Sbjct: 120 TRILEYHGEKRGDLIYTKQMLLAVGDRYEEQIAKDRAADAGYR 162


>gi|16126185|ref|NP_420749.1| NADH dehydrogenase subunit I [Caulobacter crescentus CB15]
 gi|81782641|sp|Q9A6Y4|NUOI_CAUCR RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|13423401|gb|AAK23917.1| NADH dehydrogenase I, I subunit [Caulobacter crescentus CB15]
          Length = 163

 Score =  169 bits (428), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 114/160 (71%), Positives = 128/160 (80%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
               V    L +F GAF L ++Y    K T+ YP E+   SPRFRGEHALRRYP+GEERC
Sbjct: 5   ITQAVKGAALLDFAGAFGLAMKYMVAPKKTVIYPNERNPQSPRFRGEHALRRYPSGEERC 64

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAITIE+ PR  DG+RRT RYDIDM+KCIYCGLCQEACPVDAIVEGPN
Sbjct: 65  IACKLCEAICPAQAITIEAEPR-EDGSRRTTRYDIDMVKCIYCGLCQEACPVDAIVEGPN 123

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            EFATETR+ELYYDKERLL+NGDRWE  I +N+  D+PYR
Sbjct: 124 TEFATETREELYYDKERLLDNGDRWERLIAKNLELDAPYR 163


>gi|187477549|ref|YP_785573.1| NADH dehydrogenase subunit I [Bordetella avium 197N]
 gi|115502517|sp|Q2KUZ8|NUOI_BORA1 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|115422135|emb|CAJ48659.1| NADH dehydrogenase I chain I [Bordetella avium 197N]
          Length = 162

 Score =  169 bits (428), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 94/163 (57%), Positives = 112/163 (68%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   +     L L E      L  +YFFK K T+ YP EK   SPRFRG HALRRYPNGE
Sbjct: 1   MEAIKDFFGSLLLTELFKGMRLTGKYFFKRKMTLRYPTEKTPASPRFRGLHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIES  R  DGTRRT RYDID+ KCI+CG C+E+CPVD+IVE
Sbjct: 61  ERCIACKLCEAVCPALAITIESDQR-EDGTRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               E+  E R +LY+ K+ LL  GDR+E++I +    D+PYR
Sbjct: 120 THIHEYHGEKRGDLYFTKDMLLAVGDRYEADIAQRRAEDAPYR 162


>gi|254421090|ref|ZP_05034814.1| NADH-quinone oxidoreductase, chain I subfamily [Brevundimonas sp.
           BAL3]
 gi|196187267|gb|EDX82243.1| NADH-quinone oxidoreductase, chain I subfamily [Brevundimonas sp.
           BAL3]
          Length = 163

 Score =  169 bits (428), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 107/158 (67%), Positives = 126/158 (79%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
                  + + +GA  L L+Y  + K T+NYPFE+   SPRFRGEHALRRYP+GEERCIA
Sbjct: 7   QAAKGAMMLDAIGAIGLTLKYMARPKATVNYPFERNPQSPRFRGEHALRRYPSGEERCIA 66

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEAICPAQAITIE+ PR   G+RRT RYDIDM+KCIYCGLCQEACPVDAIVEGPN E
Sbjct: 67  CKLCEAICPAQAITIEAEPRAD-GSRRTTRYDIDMVKCIYCGLCQEACPVDAIVEGPNSE 125

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           +A ETR+EL +DK RLL+NGDRWE +I +N+  D+PYR
Sbjct: 126 YAVETREELLFDKARLLDNGDRWERQIAKNLELDAPYR 163


>gi|88812968|ref|ZP_01128211.1| NADH dehydrogenase subunit I [Nitrococcus mobilis Nb-231]
 gi|88789746|gb|EAR20870.1| NADH dehydrogenase subunit I [Nitrococcus mobilis Nb-231]
          Length = 162

 Score =  169 bits (428), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 88/163 (53%), Positives = 110/163 (67%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M+  R   +   L E +    L  R+ F  K T+ YP E+   SPRFRG HALRRYPNGE
Sbjct: 1   MQAIRDLFNSFLLIELLQGLRLTGRHLFTRKYTVEYPEERAPQSPRFRGLHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIE+ PR   GTRRT RYDID+ KCIYCG C+E+CPVD+IVE
Sbjct: 61  ERCIACKLCEAVCPALAITIEAEPRAD-GTRRTTRYDIDLFKCIYCGFCEESCPVDSIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
              +E+  E R E    K+ LL  GD++E ++ ++   D+PYR
Sbjct: 120 TRIYEYHFERRGENIIHKQELLALGDQYEQQLAKDRAADAPYR 162


>gi|301098846|ref|XP_002898515.1| NADH dehydrogenase iron-sulfur protein 8, mitochondrial precursor
           [Phytophthora infestans T30-4]
 gi|262104940|gb|EEY62992.1| NADH dehydrogenase iron-sulfur protein 8, mitochondrial precursor
           [Phytophthora infestans T30-4]
          Length = 211

 Score =  169 bits (427), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 105/161 (65%), Positives = 119/161 (73%), Gaps = 1/161 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           +        FL +   A +L      + K TINYP+EKG  SPRFRGEHALRRYP+GEER
Sbjct: 52  VIEKMSDTFFLSDVFRATWLAWEVHVERKVTINYPYEKGMLSPRFRGEHALRRYPSGEER 111

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCEAICPAQAITIE+ PR   G RRT  YDIDM KCIYCG CQEACPVDAIVEGP
Sbjct: 112 CIACKLCEAICPAQAITIEAEPRAD-GARRTTSYDIDMTKCIYCGFCQEACPVDAIVEGP 170

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           NFEFATE+ +EL YDK +LL NGD+WE EI +N+  +  YR
Sbjct: 171 NFEFATESHEELLYDKAKLLANGDKWEFEIAKNLSVEQLYR 211


>gi|119897695|ref|YP_932908.1| NADH dehydrogenase subunit I [Azoarcus sp. BH72]
 gi|156632702|sp|A1K5B6|NUOI_AZOSB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|119670108|emb|CAL94021.1| putative NADH-ubiquinone oxidoreductase, chain I [Azoarcus sp.
           BH72]
          Length = 161

 Score =  169 bits (427), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 93/159 (58%), Positives = 111/159 (69%), Gaps = 1/159 (0%)

Query: 5   RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64
           +  +  LFLKE V    L  R+FF  K T+ +P EK   S RFRG HALRRYPNGEERCI
Sbjct: 4   KDYIGSLFLKELVKGMALTGRHFFARKITVQFPEEKTPQSARFRGLHALRRYPNGEERCI 63

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           ACKLCEAICPA AITIES  R  DG+RRT RYDID+ KCI+CG C+EACPVDA+VE   F
Sbjct: 64  ACKLCEAICPAMAITIESEQR-EDGSRRTSRYDIDLTKCIFCGFCEEACPVDAVVETRVF 122

Query: 125 EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           E+  E R +LYY K+ LL  GDR E +I  +   ++ +R
Sbjct: 123 EYHGEQRGDLYYTKQMLLAVGDRHEQQIAADREQEAKFR 161


>gi|149927549|ref|ZP_01915803.1| NADH dehydrogenase subunit I [Limnobacter sp. MED105]
 gi|149823822|gb|EDM83048.1| NADH dehydrogenase subunit I [Limnobacter sp. MED105]
          Length = 163

 Score =  168 bits (426), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 91/162 (56%), Positives = 112/162 (69%), Gaps = 1/162 (0%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
           ++ +  ++ L L+E +    L + Y F    T+ YP EK   SPRFRG HALRRY NGEE
Sbjct: 3   QVVKEFLNSLLLREMLKGMALTMGYMFTQPITVLYPMEKTPMSPRFRGLHALRRYENGEE 62

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLCEA+CPA AITIES  R  DGTRRT RYDID+ KCI+CG C+E+CPVD+IVE 
Sbjct: 63  RCIACKLCEAVCPAMAITIESEQR-EDGTRRTSRYDIDLTKCIFCGFCEESCPVDSIVET 121

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
              E+  E R +LY+ KE LL  GDR+E+EI  N   D+ YR
Sbjct: 122 HIHEYHGEKRGDLYFTKEMLLAVGDRYEAEIAANREADAAYR 163


>gi|156039527|ref|XP_001586871.1| hypothetical protein SS1G_11900 [Sclerotinia sclerotiorum 1980]
 gi|154697637|gb|EDN97375.1| hypothetical protein SS1G_11900 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 229

 Score =  168 bits (426), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 102/162 (62%), Positives = 119/162 (73%), Gaps = 1/162 (0%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
                   +  + E     ++ L  +F+   TI YPFEKG  SPRFRGEHALRRYP+GEE
Sbjct: 69  STMDKAGKYFLMSEMFRGMYVVLEQYFRPPYTIYYPFEKGPISPRFRGEHALRRYPSGEE 128

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLCEAICPAQAITIE+  R  DG+RRT RYDIDM KCIYCG CQE+CPVDAIVE 
Sbjct: 129 RCIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQESCPVDAIVES 187

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           PN E+ATETR+EL Y+KE+LL NGD+WE E+      D+PYR
Sbjct: 188 PNAEYATETREELLYNKEKLLANGDKWEPELAAAARADAPYR 229


>gi|320581229|gb|EFW95450.1| NADH-quinone oxidoreductase chain I [Pichia angusta DL-1]
          Length = 212

 Score =  168 bits (425), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 102/160 (63%), Positives = 120/160 (75%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
                 +  L E     ++ L  +F+A  TI YPFEKG+ SPRFRGEHALRRYP+GEERC
Sbjct: 54  LSKATRWYLLAEMFRGMYVVLEMYFRAPYTIYYPFEKGAISPRFRGEHALRRYPSGEERC 113

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAITIE+  R   G+RRT +YDIDM KCIYCG CQE+CPVDAIVE PN
Sbjct: 114 IACKLCEAICPAQAITIEAEERAD-GSRRTYKYDIDMTKCIYCGYCQESCPVDAIVETPN 172

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            E++TETR+EL Y+KE+LL+NGDRWE E       D+PYR
Sbjct: 173 IEYSTETREELLYNKEKLLSNGDRWEQEYKYAADADAPYR 212


>gi|148285163|ref|YP_001249253.1| NADH dehydrogenase subunit I [Orientia tsutsugamushi str. Boryong]
 gi|189184497|ref|YP_001938282.1| NADH dehydrogenase subunit I [Orientia tsutsugamushi str. Ikeda]
 gi|156633535|sp|A5CFN6|NUOI_ORITB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|226737406|sp|B3CUK1|NUOI_ORITI RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|146740602|emb|CAM81256.1| NADH dehydrogenase I chain I [Orientia tsutsugamushi str. Boryong]
 gi|189181268|dbj|BAG41048.1| NADH dehydrogenase I chain I [Orientia tsutsugamushi str. Ikeda]
          Length = 161

 Score =  168 bits (425), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 109/163 (66%), Positives = 124/163 (76%), Gaps = 2/163 (1%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M+I         L E +   FL L+YFFK+K TI YP E    SPRF+GEHALRRYP+GE
Sbjct: 1   MKIT-NFTKSFLLYEIIVGMFLTLKYFFKSKVTIRYPNEVSKLSPRFKGEHALRRYPDGE 59

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEAICPAQAITIE+  +  +G+RRT +YDIDM KCIYCGLCQEACPVDAIVE
Sbjct: 60  ERCIACKLCEAICPAQAITIEAKEQ-PNGSRRTTKYDIDMTKCIYCGLCQEACPVDAIVE 118

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPN EFATET QEL Y+KE+LL NGD WE  I +N+  DS YR
Sbjct: 119 GPNLEFATETHQELLYNKEKLLRNGDMWEHVIAKNLKVDSIYR 161


>gi|332185682|ref|ZP_08387429.1| NADH-quinone oxidoreductase, chain I family protein [Sphingomonas
           sp. S17]
 gi|332014040|gb|EGI56098.1| NADH-quinone oxidoreductase, chain I family protein [Sphingomonas
           sp. S17]
          Length = 161

 Score =  168 bits (425), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 119/158 (75%), Positives = 128/158 (81%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
             V    L EFV    L LRYFFK K TINYP+EK   SPRFRGEHALRRYPNGEERCIA
Sbjct: 5   QYVKAFTLWEFVKGHALTLRYFFKPKATINYPYEKNPISPRFRGEHALRRYPNGEERCIA 64

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEAICPAQAITIE+ PR   G+RRT RYDIDM KCIYCGLCQEACPVDAIVEGPNFE
Sbjct: 65  CKLCEAICPAQAITIEAEPRDD-GSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGPNFE 123

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           F+TETR+EL YDK +LL+NGDRWES I  N+  D+PYR
Sbjct: 124 FSTETREELIYDKSKLLDNGDRWESAIAANLAADAPYR 161


>gi|219123199|ref|XP_002181917.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217406518|gb|EEC46457.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 163

 Score =  167 bits (424), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 109/161 (67%), Positives = 124/161 (77%), Gaps = 1/161 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           I   +    FL E   A++L    F K + TINYP+EKG  SPRFRGEHALRRYP+GEER
Sbjct: 4   ILDNSSRIFFLTEIARAWWLAGEVFLKPRVTINYPYEKGYLSPRFRGEHALRRYPSGEER 63

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCEA CPAQAITIE   R  DG RRT RYDIDM KCIYCG CQEACPVDAIVEGP
Sbjct: 64  CIACKLCEAACPAQAITIEVQER-EDGARRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 122

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           NFEFATET +EL YDKE+LL+NGD+WE +I +N++ +  YR
Sbjct: 123 NFEFATETHEELLYDKEKLLSNGDKWERQIAKNLMHEHLYR 163


>gi|253998391|ref|YP_003050454.1| NADH dehydrogenase subunit I [Methylovorus sp. SIP3-4]
 gi|313200468|ref|YP_004039126.1| NADH-quinone oxidoreductase subunit I [Methylovorus sp. MP688]
 gi|253985070|gb|ACT49927.1| NADH-quinone oxidoreductase, chain I [Methylovorus sp. SIP3-4]
 gi|312439784|gb|ADQ83890.1| NADH-quinone oxidoreductase, chain I [Methylovorus sp. MP688]
          Length = 163

 Score =  167 bits (424), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 90/160 (56%), Positives = 110/160 (68%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
            +  +S L L E +    L  RYFF  K TI +P E+   SPRFRG HALRRYPNGEERC
Sbjct: 5   IKTVLSSLMLVELLKGMALTGRYFFARKITIQFPEERTPMSPRFRGLHALRRYPNGEERC 64

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEA+CPA AITIES  R  D TRRT RYDID+ KCI+CG C+E+CPVD+IVE   
Sbjct: 65  IACKLCEAVCPAMAITIESEQR-EDNTRRTTRYDIDLTKCIFCGFCEESCPVDSIVETRI 123

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           F++  E R +L Y K  LL  GD++E++I  +   D+ YR
Sbjct: 124 FDYHGEKRGDLLYTKPMLLAVGDKYETQIAADRSADAKYR 163


>gi|157804166|ref|YP_001492715.1| NADH dehydrogenase subunit I [Rickettsia canadensis str. McKiel]
 gi|226737413|sp|A8EZZ7|NUOI_RICCK RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|157785429|gb|ABV73930.1| NADH dehydrogenase subunit I [Rickettsia canadensis str. McKiel]
          Length = 159

 Score =  167 bits (424), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 108/160 (67%), Positives = 117/160 (73%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
               +   FL E V    L LRYFFKAK TINYP+EK   SPRF+GEHALRRY NG ERC
Sbjct: 1   MINYLKSFFLYEIVRGMALTLRYFFKAKVTINYPYEKSPVSPRFKGEHALRRYENGVERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAI IE+     DG+RRT RYDIDM KCIYCGLCQEACPVDAIVEGPN
Sbjct: 61  IACKLCEAICPAQAIVIEAE-ALDDGSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGPN 119

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FEFA+ T   L YDKERLL NGD+WE  +   +  D  YR
Sbjct: 120 FEFASLTHTALIYDKERLLQNGDKWEQALTSKLYKDYEYR 159


>gi|103486787|ref|YP_616348.1| NADH dehydrogenase subunit I [Sphingopyxis alaskensis RB2256]
 gi|123379893|sp|Q1GTK7|NUOI_SPHAL RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|98976864|gb|ABF53015.1| NADH-quinone oxidoreductase, chain I [Sphingopyxis alaskensis
           RB2256]
          Length = 162

 Score =  167 bits (424), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 117/163 (71%), Positives = 127/163 (77%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M      V    L EFV A  L L+YFFK K TINYPFEK   SPRFRGEHALRRYPNGE
Sbjct: 1   MSYVGHLVKSFTLWEFVKAHALTLKYFFKPKATINYPFEKNPLSPRFRGEHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPAQAITIE+ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIVE
Sbjct: 61  ERCIACKLCEAVCPAQAITIEAEPRDD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           GPNFE+ATETR+EL YDK +LL NGD+WE  I  N+  D+PYR
Sbjct: 120 GPNFEYATETREELLYDKAKLLANGDKWERAIAANLAADAPYR 162


>gi|297493958|gb|ADI40701.1| NADH dehydrogenase Fe-S protein 8 [Miniopterus schreibersii]
          Length = 166

 Score =  167 bits (424), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 104/151 (68%), Positives = 118/151 (78%), Gaps = 2/151 (1%)

Query: 1   MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59
           M+ +       L   E V    + L Y F+   TINYPFEKG  SPRFRGEHALRRYP+G
Sbjct: 17  MKSVTDRAAQTLLWTELVRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 76

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           EERCIACKLCEA+CPAQAITIE+ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIV
Sbjct: 77  EERCIACKLCEAVCPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 135

Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWES 150
           EGPNFEF+TET +EL Y+KE+LLNNGD+WE+
Sbjct: 136 EGPNFEFSTETHEELLYNKEKLLNNGDKWEA 166


>gi|255019915|ref|ZP_05291990.1| NADH-ubiquinone oxidoreductase chain I [Acidithiobacillus caldus
           ATCC 51756]
 gi|254970695|gb|EET28182.1| NADH-ubiquinone oxidoreductase chain I [Acidithiobacillus caldus
           ATCC 51756]
          Length = 163

 Score =  167 bits (424), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 91/159 (57%), Positives = 108/159 (67%), Gaps = 1/159 (0%)

Query: 5   RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64
           +      FL E +    L  RYFF  K T+ YP E+   SPRFRG HALRRY NGEERCI
Sbjct: 6   KQWFHSFFLTELLRGMQLTGRYFFGRKFTVQYPEERTPQSPRFRGLHALRRYENGEERCI 65

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           +CKLCEA+CPA AITI    R   GTRRT  YDID+ KCI+CGLC+E+CPVD+IVE   F
Sbjct: 66  SCKLCEAVCPALAITIRGEERAD-GTRRTTAYDIDLSKCIFCGLCEESCPVDSIVESRVF 124

Query: 125 EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           ++  ETR EL Y+KERLL NGDR E ++  +   D PYR
Sbjct: 125 DYHAETRAELLYNKERLLANGDRLERQLAADRAADRPYR 163


>gi|218193826|gb|EEC76253.1| hypothetical protein OsI_13702 [Oryza sativa Indica Group]
          Length = 261

 Score =  167 bits (423), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 117/199 (58%), Positives = 131/199 (65%), Gaps = 39/199 (19%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKA-------------------------------- 30
           +F  +++ LFL E V    L L+YFF+                                 
Sbjct: 64  VFERSINTLFLTEMVRGLMLTLKYFFEKNINYPFEKGPLSPRFRGEHALRRYPTGEERCI 123

Query: 31  ------KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84
                   TINYPFEKG  SPRFRGEHALRRYP GEERCIACKLCEAICPAQAITIE+  
Sbjct: 124 ACKLCEAVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAICPAQAITIEAEE 183

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNN 144
           R  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFEFATET +EL YDKE+LL N
Sbjct: 184 R-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLEN 242

Query: 145 GDRWESEIVRNIVTDSPYR 163
           GDRWE+EI  N+ ++S YR
Sbjct: 243 GDRWETEIAANLESESLYR 261


>gi|329889339|ref|ZP_08267682.1| NADH-quinone oxidoreductase subunit 9 [Brevundimonas diminuta ATCC
           11568]
 gi|328844640|gb|EGF94204.1| NADH-quinone oxidoreductase subunit 9 [Brevundimonas diminuta ATCC
           11568]
          Length = 151

 Score =  167 bits (422), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 112/152 (73%), Positives = 125/152 (82%), Gaps = 1/152 (0%)

Query: 12  FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71
            L +  GA  L ++Y  K K T+NYPFE+   SPRFRGEHALRRYPNGEERCIACKLCEA
Sbjct: 1   MLTDVFGAVGLSMKYMMKPKATVNYPFERNPQSPRFRGEHALRRYPNGEERCIACKLCEA 60

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           ICPAQAITIE+ PR   G+RRT RYDIDM+KCIYCGLCQEACPVDAIVEGPN EFATETR
Sbjct: 61  ICPAQAITIEAEPRAD-GSRRTTRYDIDMVKCIYCGLCQEACPVDAIVEGPNSEFATETR 119

Query: 132 QELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           +EL YDK RLL+NGDRWE  I +N+  D+PYR
Sbjct: 120 EELLYDKARLLDNGDRWERLIAKNLELDAPYR 151


>gi|309379794|emb|CBX21570.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 162

 Score =  167 bits (422), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 90/163 (55%), Positives = 106/163 (65%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M      V    L E V    + L+ FF  K TI +P EK   S RFRG HA RRYPNGE
Sbjct: 1   MNNMANLVKTFLLGELVKGLGVTLKNFFARKDTIYFPEEKTPQSVRFRGLHAQRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AI IES  R  DGTRRT RYDID+ KCI+CG C+EACP DAIVE
Sbjct: 61  ERCIACKLCEAVCPAMAINIESEER-EDGTRRTKRYDIDLTKCIFCGFCEEACPTDAIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
              FE+  E + +L+  K  LL  GD++E+EI +    D+PYR
Sbjct: 120 THIFEYHGEKKGDLHMTKPILLAIGDKYEAEIAKRKAADAPYR 162


>gi|160872870|ref|ZP_02063002.1| NADH-quinone oxidoreductase subunit i 2 (nadhdehydrogenase i
           subunit i 2) (ndh-1 subunit i 2) [Rickettsiella grylli]
 gi|159121669|gb|EDP47007.1| NADH-quinone oxidoreductase subunit i 2 (nadhdehydrogenase i
           subunit i 2) (ndh-1 subunit i 2) [Rickettsiella grylli]
          Length = 165

 Score =  166 bits (421), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 87/163 (53%), Positives = 107/163 (65%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           +R     +    L E      +  RYFFK K T+ +P E+   S RFRG HALRRYPNGE
Sbjct: 4   LRKIIQWIKTFTLWELFKGLGVTGRYFFKKKVTLQFPEEETPRSVRFRGLHALRRYPNGE 63

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIE+ PR  DG+RRT  Y+ID+ KCIYCG C+E+CPVDAIVE
Sbjct: 64  ERCIACKLCEAVCPALAITIEAEPR-EDGSRRTTLYEIDLFKCIYCGFCEESCPVDAIVE 122

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
                +  E R E    K++LL  GDR+E +I +    D+PYR
Sbjct: 123 TNIPHYHFENRGEQIMTKQKLLAIGDRYEKQIAKERAEDAPYR 165


>gi|225024115|ref|ZP_03713307.1| hypothetical protein EIKCOROL_00983 [Eikenella corrodens ATCC
           23834]
 gi|224943140|gb|EEG24349.1| hypothetical protein EIKCOROL_00983 [Eikenella corrodens ATCC
           23834]
          Length = 159

 Score =  166 bits (421), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 89/158 (56%), Positives = 106/158 (67%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
             V    L E V    + L+ FF  K TI +P EK   S RFRG HA RRYPNGEERCIA
Sbjct: 3   NLVKTFLLGELVKGMGVTLKNFFARKDTIYFPEEKTPQSVRFRGLHAQRRYPNGEERCIA 62

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEA+CPA AI IES  R  DGTRRT RYDID+ KCI+CG C+EACP DAIVE   FE
Sbjct: 63  CKLCEAVCPAMAINIESEER-EDGTRRTTRYDIDLTKCIFCGFCEEACPTDAIVETHIFE 121

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           +  E + +L++ K  LL  GD++E+EI +    D+PYR
Sbjct: 122 YHGEKKGDLHFTKPMLLAIGDQYEAEIAKRKAADAPYR 159


>gi|254468778|ref|ZP_05082184.1| NADH-quinone oxidoreductase chain i [beta proteobacterium KB13]
 gi|207087588|gb|EDZ64871.1| NADH-quinone oxidoreductase chain i [beta proteobacterium KB13]
          Length = 163

 Score =  166 bits (419), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 91/164 (55%), Positives = 112/164 (68%), Gaps = 2/164 (1%)

Query: 1   MRIFRCNV-SFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59
           MR    N+   L L E +    L L YFF  K TI YP +K   SPRFRG HALRRYPNG
Sbjct: 1   MRKLVSNISKSLSLYELLKGMKLTLSYFFAKKVTIQYPEQKTPQSPRFRGLHALRRYPNG 60

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           EERCIACKLCEA+CPA AITIES  R  D +RRT RYDID+ KCI+CG C+E+CPVD+IV
Sbjct: 61  EERCIACKLCEAVCPAMAITIESELR-EDNSRRTTRYDIDLTKCIFCGFCEESCPVDSIV 119

Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           E   FE+  E R +L Y K+ LL+ G ++E +I ++   ++ YR
Sbjct: 120 ETRIFEYHGEERGDLLYTKDMLLDVGKKYEKQIAKDRQQEAKYR 163


>gi|329118908|ref|ZP_08247603.1| NADH-quinone oxidoreductase subunit I [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327464936|gb|EGF11226.1| NADH-quinone oxidoreductase subunit I [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 159

 Score =  165 bits (418), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 89/158 (56%), Positives = 105/158 (66%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
             V    L E V    + L+ FF  K TI +P EK   S RFRG HA RRYPNGEERCIA
Sbjct: 3   NLVKTFLLGELVKGMGVTLKNFFARKDTIYFPEEKTPQSVRFRGLHAQRRYPNGEERCIA 62

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEA+CPA AI IES  R  DGTRRT RYDID+ KCI+CG C+EACP DAIVE   FE
Sbjct: 63  CKLCEAVCPAMAINIESEER-EDGTRRTTRYDIDLTKCIFCGFCEEACPTDAIVETHIFE 121

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           +  E + +L++ K  LL  GD++E EI +    D+PYR
Sbjct: 122 YHGEKKGDLHFTKPMLLAIGDQYEEEIAKRKAADAPYR 159


>gi|325267328|ref|ZP_08133990.1| NADH-quinone oxidoreductase subunit I [Kingella denitrificans ATCC
           33394]
 gi|324981265|gb|EGC16915.1| NADH-quinone oxidoreductase subunit I [Kingella denitrificans ATCC
           33394]
          Length = 195

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 88/158 (55%), Positives = 104/158 (65%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
                  L E V    + L+ FF  K TI +P EK   S RFRG HA RRYPNGEERCIA
Sbjct: 39  NFFKTFLLGELVKGMGVTLKNFFARKDTIYFPEEKTPQSVRFRGLHAQRRYPNGEERCIA 98

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEA+CPA AI IES  R  DGTRRT RYDID+ KCI+CG C+EACP DAIVE   FE
Sbjct: 99  CKLCEAVCPAMAINIESEER-EDGTRRTTRYDIDLTKCIFCGFCEEACPTDAIVETHIFE 157

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           +  E + +L+  K  LL  GD++E+EI +    D+PYR
Sbjct: 158 YHGEKKGDLHMTKPILLAIGDKYEAEIAKRKAADAPYR 195


>gi|148555900|ref|YP_001263482.1| NADH dehydrogenase subunit I [Sphingomonas wittichii RW1]
 gi|148501090|gb|ABQ69344.1| NADH-quinone oxidoreductase, chain I [Sphingomonas wittichii RW1]
          Length = 161

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 114/158 (72%), Positives = 128/158 (81%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
             +    L EFV A +L L+YFF+AK TINYPFEK   SPRFRGEHALRRYPNGEERCIA
Sbjct: 5   HIIKSFTLWEFVKAHWLTLKYFFRAKATINYPFEKNPLSPRFRGEHALRRYPNGEERCIA 64

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEA+CPAQAITIE+ PR   G+RRT RYDIDM KCI+CG CQEACPVDAIVEGPNFE
Sbjct: 65  CKLCEAVCPAQAITIEAEPRDD-GSRRTTRYDIDMTKCIFCGFCQEACPVDAIVEGPNFE 123

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           ++TETR+EL YDK +LL NGDRWE  I  N+  D+PYR
Sbjct: 124 YSTETREELIYDKAKLLANGDRWEPAIAANLAADAPYR 161


>gi|240280829|gb|EER44333.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Ajellomyces
           capsulatus H143]
          Length = 150

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 102/151 (67%), Positives = 117/151 (77%), Gaps = 1/151 (0%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           + E +    + L  FF+   TI YPFEKG  SPRFRGEHALRRYP+GEERCIACKLCEAI
Sbjct: 1   MTEMLRGMDVVLEQFFRPPYTIFYPFEKGPISPRFRGEHALRRYPSGEERCIACKLCEAI 60

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           CPA AITIE+  R  DG+RRT RYDIDM KCIYCG CQE+CPVDAIVE PN E+ATETR+
Sbjct: 61  CPALAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQESCPVDAIVESPNAEYATETRE 119

Query: 133 ELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           EL Y+KE+LL NGD+WE E+      D+PYR
Sbjct: 120 ELLYNKEKLLANGDKWEPELAAVARADAPYR 150


>gi|118498233|ref|YP_899283.1| NADH dehydrogenase subunit I [Francisella tularensis subsp.
           novicida U112]
 gi|156503296|ref|YP_001429361.1| NADH dehydrogenase subunit I [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|194324417|ref|ZP_03058190.1| NADH-quinone oxidoreductase, chain i family [Francisella tularensis
           subsp. novicida FTE]
 gi|208780260|ref|ZP_03247602.1| NADH-quinone oxidoreductase, chain i family [Francisella novicida
           FTG]
 gi|254373574|ref|ZP_04989060.1| NADH dehydrogenase I [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|254375041|ref|ZP_04990521.1| NADH-quinone oxidoreductase subunit I [Francisella novicida
           GA99-3548]
 gi|290952997|ref|ZP_06557618.1| NADH dehydrogenase subunit I [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313817|ref|ZP_06804390.1| NADH dehydrogenase subunit I [Francisella tularensis subsp.
           holarctica URFT1]
 gi|156633519|sp|A0Q8G4|NUOI_FRATN RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|166918792|sp|A7NEK2|NUOI_FRATF RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|118424139|gb|ABK90529.1| NADH dehydrogenase I, I subunit [Francisella novicida U112]
 gi|151571298|gb|EDN36952.1| NADH dehydrogenase I [Francisella novicida GA99-3549]
 gi|151572759|gb|EDN38413.1| NADH-quinone oxidoreductase subunit I [Francisella novicida
           GA99-3548]
 gi|156253899|gb|ABU62405.1| NADH-quinone oxidoreductase, chain I [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|194321482|gb|EDX18967.1| NADH-quinone oxidoreductase, chain i family [Francisella tularensis
           subsp. novicida FTE]
 gi|208743909|gb|EDZ90211.1| NADH-quinone oxidoreductase, chain i family [Francisella novicida
           FTG]
 gi|332184788|gb|AEE27042.1| NADH-ubiquinone oxidoreductase chain I [Francisella cf. novicida
           3523]
 gi|332678969|gb|AEE88098.1| NADH-ubiquinone oxidoreductase chain I [Francisella cf. novicida
           Fx1]
          Length = 162

 Score =  165 bits (418), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 81/163 (49%), Positives = 103/163 (63%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           MR     +    L E +    +  ++FF  K T+ YP EK   S RFRG HALRRY NGE
Sbjct: 1   MRNITNFLKTFLLWELLKGLKVTGKHFFTRKVTVQYPDEKTPISNRFRGLHALRRYENGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCE +CPA AITI S  R  DGTRRT  Y+ID+ KCI+CG C+E+CPVD+IVE
Sbjct: 61  ERCIACKLCEVVCPALAITINSTER-EDGTRRTSSYEIDLFKCIFCGYCEESCPVDSIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               E+  E R E    K +LL  GD++E++I  + + D  +R
Sbjct: 120 TNILEYHFEERGENIMTKAKLLAIGDKYEAQIAADRLQDKDFR 162


>gi|58699331|ref|ZP_00374109.1| NADH dehydrogenase I, I subunit [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58534154|gb|EAL58375.1| NADH dehydrogenase I, I subunit [Wolbachia endosymbiont of
           Drosophila ananassae]
          Length = 155

 Score =  165 bits (417), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 106/152 (69%), Positives = 118/152 (77%), Gaps = 1/152 (0%)

Query: 11  LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70
           L   E +  F + L+Y FK K T+ YP EKG  SPRFRGEHALRRYPNGEERCIACKLCE
Sbjct: 4   LVFVELIKGFVITLKYMFKPKVTLRYPMEKGPLSPRFRGEHALRRYPNGEERCIACKLCE 63

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
            ICPAQAI IE+  R  DG+RRT RYDIDM KCIYCGLCQEACPVDAIVEGPNFEFATET
Sbjct: 64  VICPAQAIVIEAEER-EDGSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGPNFEFATET 122

Query: 131 RQELYYDKERLLNNGDRWESEIVRNIVTDSPY 162
           R+EL Y+KE+LL NG+ WE  I   +  + PY
Sbjct: 123 REELMYNKEKLLRNGEVWEDAIALRLKKNRPY 154


>gi|238023170|ref|ZP_04603596.1| hypothetical protein GCWU000324_03096 [Kingella oralis ATCC 51147]
 gi|237865553|gb|EEP66693.1| hypothetical protein GCWU000324_03096 [Kingella oralis ATCC 51147]
          Length = 159

 Score =  165 bits (417), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 89/158 (56%), Positives = 105/158 (66%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
             V    L E V    + L+ FF  K TI +P EK   S RFRG HA RRYPNGEERCIA
Sbjct: 3   NLVKTFLLGELVKGMGVTLKNFFARKDTIYFPEEKTPQSVRFRGLHAQRRYPNGEERCIA 62

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEA+CPA AI IES  R  DGTRRT RYDID+ KCI+CG C+EACP DAIVE   FE
Sbjct: 63  CKLCEAVCPAMAINIESEER-EDGTRRTTRYDIDLTKCIFCGFCEEACPTDAIVETHIFE 121

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           +  E + +L+  K  LL  GD++E+EI +    D+PYR
Sbjct: 122 YHGEKKGDLHMTKPILLAIGDKYEAEIAKRKAADAPYR 159


>gi|332968226|gb|EGK07303.1| NADH-quinone oxidoreductase subunit I [Kingella kingae ATCC 23330]
          Length = 159

 Score =  164 bits (416), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 89/158 (56%), Positives = 105/158 (66%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
             V    L E V    + L+ FF  K TI +P EK   S RFRG HA RRYPNGEERCIA
Sbjct: 3   NFVKTFLLGELVKGMGVTLKNFFARKDTIYFPEEKTPQSVRFRGLHAQRRYPNGEERCIA 62

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEA+CPA AI IES  R  DGTRRT RYDID+ KCI+CG C+EACP DAIVE   FE
Sbjct: 63  CKLCEAVCPAMAINIESEQR-EDGTRRTTRYDIDLTKCIFCGFCEEACPTDAIVETHIFE 121

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           +  E + +L+  K  LL  GD++E+EI +    D+PYR
Sbjct: 122 YHGEKKGDLHMTKPILLAIGDKYEAEIAKRKAADAPYR 159


>gi|313216915|emb|CBY38127.1| unnamed protein product [Oikopleura dioica]
 gi|313233922|emb|CBY10090.1| unnamed protein product [Oikopleura dioica]
 gi|313237823|emb|CBY12956.1| unnamed protein product [Oikopleura dioica]
          Length = 159

 Score =  164 bits (416), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 104/152 (68%), Positives = 115/152 (75%), Gaps = 1/152 (0%)

Query: 12  FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71
           F+ E      + +  FF    TINYPFEKG  SPRFRGEHALRRYP GEERCIACKLCEA
Sbjct: 9   FISEIFRGVGMGIGKFFVEPATINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEA 68

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
            CPAQAITIE+  R   G+RRT RYDIDM KCIYCG C EACPVDAIVEGPNFE++TET 
Sbjct: 69  ACPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCMEACPVDAIVEGPNFEYSTETH 127

Query: 132 QELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           +EL Y+KE+LL NGD+WE EI  NI  D  YR
Sbjct: 128 EELLYNKEKLLMNGDKWEPEIAANIQMDYMYR 159


>gi|297538948|ref|YP_003674717.1| NADH-quinone oxidoreductase subunit I [Methylotenera sp. 301]
 gi|297258295|gb|ADI30140.1| NADH-quinone oxidoreductase, chain I [Methylotenera sp. 301]
          Length = 163

 Score =  164 bits (416), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 89/160 (55%), Positives = 107/160 (66%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
            +  +S L L E +    L  RYFF  K T+ YP E    S RFRG HALRRYPNGEERC
Sbjct: 5   IKSTLSSLMLVELLKGMALTGRYFFAPKITVQYPEEVTPQSNRFRGLHALRRYPNGEERC 64

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEA+CPA AITIES  R  D TRRT RYDID+ KCI+CG+C+E+CPVD+IVE   
Sbjct: 65  IACKLCEAVCPAMAITIESEQR-EDNTRRTTRYDIDLTKCIFCGMCEESCPVDSIVETRV 123

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           F++  E R +L Y KE LL  GD+ E +I  +   D  +R
Sbjct: 124 FDYHGEQRGDLLYTKEMLLAVGDKHEKQIAADRAQDKEFR 163


>gi|302879333|ref|YP_003847897.1| NADH-quinone oxidoreductase, chain I [Gallionella capsiferriformans
           ES-2]
 gi|302582122|gb|ADL56133.1| NADH-quinone oxidoreductase, chain I [Gallionella capsiferriformans
           ES-2]
          Length = 162

 Score =  164 bits (416), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 86/163 (52%), Positives = 102/163 (62%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   +       L E +    L  RY F  K T+ +P EK   S RFRG HA RRY NGE
Sbjct: 1   MEKIKDFFKTFLLIELLKGMALTGRYMFARKITVQFPDEKTPQSFRFRGLHAQRRYENGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCI CKLCEA+CPA AI I    R  DGTRRT +YDID+ KCI+CG C+E+CPVDAIVE
Sbjct: 61  ERCIGCKLCEAVCPAMAIKIAVAER-EDGTRRTTQYDIDLTKCIFCGFCEESCPVDAIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
              FE+  E R +LYY K  LL  GD+ E++I R+   DS YR
Sbjct: 120 TRVFEYHGEKRGDLYYTKPMLLAVGDKHEAQIARDRAADSKYR 162


>gi|225630646|ref|YP_002727437.1| NADH dehydrogenase I, I subunit [Wolbachia sp. wRi]
 gi|225592627|gb|ACN95646.1| NADH dehydrogenase I, I subunit [Wolbachia sp. wRi]
          Length = 169

 Score =  164 bits (416), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 105/160 (65%), Positives = 120/160 (75%), Gaps = 1/160 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           + +    +    E +  F + L+Y FK K T+ YP EKG  SPRFRGEHALRRYPNGEER
Sbjct: 10  MLKKLAWYWSFVELIKGFVITLKYMFKPKVTLRYPMEKGPLSPRFRGEHALRRYPNGEER 69

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCE ICPAQAI IE+  R  DG+RRT RYDIDM KCIYCGLCQEACPVDAIVEGP
Sbjct: 70  CIACKLCEVICPAQAIVIEAEER-EDGSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGP 128

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPY 162
           NFEFATETR+EL Y+KE+LL NG+ WE  I   +  + PY
Sbjct: 129 NFEFATETREELMYNKEKLLRNGEVWEDAIALRLKKNRPY 168


>gi|225560616|gb|EEH08897.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus G186AR]
          Length = 225

 Score =  164 bits (416), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 99/160 (61%), Positives = 113/160 (70%), Gaps = 12/160 (7%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
                 +  + E +               TI YPFEKG  SPRFRGEHALRRYP+GEERC
Sbjct: 78  LDKAGKYFLMTEMLRGI-----------YTIFYPFEKGPISPRFRGEHALRRYPSGEERC 126

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPA AITIE+  R  DG+RRT RYDIDM KCIYCG CQE+CPVDAIVE PN
Sbjct: 127 IACKLCEAICPALAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQESCPVDAIVESPN 185

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            E+ATETR+EL Y+KE+LL NGD+WE E+      D+PYR
Sbjct: 186 AEYATETREELLYNKEKLLANGDKWEPELAAVARADAPYR 225


>gi|325088907|gb|EGC42217.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus H88]
          Length = 225

 Score =  164 bits (416), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 99/160 (61%), Positives = 113/160 (70%), Gaps = 12/160 (7%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
                 +  + E +               TI YPFEKG  SPRFRGEHALRRYP+GEERC
Sbjct: 78  LDKAGKYFLMTEMLRGI-----------YTIFYPFEKGPISPRFRGEHALRRYPSGEERC 126

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPA AITIE+  R  DG+RRT RYDIDM KCIYCG CQE+CPVDAIVE PN
Sbjct: 127 IACKLCEAICPALAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQESCPVDAIVESPN 185

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            E+ATETR+EL Y+KE+LL NGD+WE E+      D+PYR
Sbjct: 186 AEYATETREELLYNKEKLLANGDKWEPELAAVARADAPYR 225


>gi|261379572|ref|ZP_05984145.1| NADH dehydrogenase, I subunit [Neisseria subflava NJ9703]
 gi|269214461|ref|ZP_05986605.2| NADH dehydrogenase, I subunit [Neisseria lactamica ATCC 23970]
 gi|296313738|ref|ZP_06863679.1| NADH dehydrogenase, I subunit [Neisseria polysaccharea ATCC 43768]
 gi|313669276|ref|YP_004049560.1| NADH dehydrogenase I chain I [Neisseria lactamica ST-640]
 gi|261391783|emb|CAX49238.1| NADH-quinone oxidoreductase chain I (NADH dehydrogenase I, chain I;
           NDH-1, chain I) [Neisseria meningitidis 8013]
 gi|269209739|gb|EEZ76194.1| NADH dehydrogenase, I subunit [Neisseria lactamica ATCC 23970]
 gi|284798046|gb|EFC53393.1| NADH dehydrogenase, I subunit [Neisseria subflava NJ9703]
 gi|296839661|gb|EFH23599.1| NADH dehydrogenase, I subunit [Neisseria polysaccharea ATCC 43768]
 gi|308388470|gb|ADO30790.1| NADH dehydrogenase I chain I [Neisseria meningitidis alpha710]
 gi|313006738|emb|CBN88208.1| NADH dehydrogenase I chain I [Neisseria lactamica 020-06]
 gi|325130978|gb|EGC53705.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis
           OX99.30304]
          Length = 159

 Score =  164 bits (416), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 89/158 (56%), Positives = 105/158 (66%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
             V    L E V    + L+ FF  K TI +P EK   S RFRG HA RRYPNGEERCIA
Sbjct: 3   NLVKTFLLGELVKGLGVTLKNFFARKDTIYFPEEKTPQSVRFRGLHAQRRYPNGEERCIA 62

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEA+CPA AI IES  R  DGTRRT RYDID+ KCI+CG C+EACP DAIVE   FE
Sbjct: 63  CKLCEAVCPAMAINIESEER-EDGTRRTKRYDIDLTKCIFCGFCEEACPTDAIVETHIFE 121

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           +  E + +L+  K  LL  GD++E+EI +    D+PYR
Sbjct: 122 YHGEKKGDLHMTKPILLAIGDKYEAEIAKRKAADAPYR 159


>gi|294011317|ref|YP_003544777.1| NADH dehydrogenase I chain I [Sphingobium japonicum UT26S]
 gi|292674647|dbj|BAI96165.1| NADH dehydrogenase I chain I [Sphingobium japonicum UT26S]
          Length = 161

 Score =  164 bits (415), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 116/158 (73%), Positives = 126/158 (79%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
             V    L EFV A  L L+YFFK K TINYP+EK   SPRFRGEHALRRYPNGEERCIA
Sbjct: 5   YYVKSFTLWEFVKAHALTLKYFFKPKATINYPYEKNPISPRFRGEHALRRYPNGEERCIA 64

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEAICPAQAITIE+ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE
Sbjct: 65  CKLCEAICPAQAITIEAQPRDD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 123

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           F+TETR+EL YDK +LL NGD+WE  I  N+  D+PYR
Sbjct: 124 FSTETREELIYDKAKLLENGDKWERAIAANLAADAPYR 161


>gi|167627161|ref|YP_001677661.1| NADH dehydrogenase subunit I [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|189030929|sp|B0TWQ2|NUOI_FRAP2 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|167597162|gb|ABZ87160.1| NADH dehydrogenase [Francisella philomiragia subsp. philomiragia
           ATCC 25017]
          Length = 162

 Score =  164 bits (415), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 80/163 (49%), Positives = 102/163 (62%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           MR          L E +    +  ++FF  K T+ YP EK   S RFRG HALRRY NGE
Sbjct: 1   MRNITSFFKTFLLWELLKGMKVTGKHFFTRKVTVQYPDEKTPISNRFRGLHALRRYENGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCE +CPA AITI S  R  DG+RRT  Y+ID+ KCI+CG C+E+CPVD+IVE
Sbjct: 61  ERCIACKLCEVVCPALAITINSTER-EDGSRRTSSYEIDLFKCIFCGYCEESCPVDSIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               E+  E R E    K +LL  GD++E++I  + + D  +R
Sbjct: 120 TNILEYHFEERGENIMTKAKLLAIGDKYEAQIAADRLQDKDFR 162


>gi|319943356|ref|ZP_08017638.1| NADH-quinone oxidoreductase subunit I [Lautropia mirabilis ATCC
           51599]
 gi|319743171|gb|EFV95576.1| NADH-quinone oxidoreductase subunit I [Lautropia mirabilis ATCC
           51599]
          Length = 162

 Score =  164 bits (415), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 94/163 (57%), Positives = 110/163 (67%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           MR  +   S   L E +    L  RY F  K T+ YP +K   SPRFRG HALRRY NGE
Sbjct: 1   MRAIKDFFSSFLLLELLKGMKLTGRYLFARKITVQYPEQKTPLSPRFRGLHALRRYSNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIES  R   G RRT RYDID+ KCI+CGLC+E+CPVD+IVE
Sbjct: 61  ERCIACKLCEAVCPAMAITIESAVRAD-GQRRTTRYDIDLTKCIFCGLCEESCPVDSIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
              FE+  E R +LY+ K+ LL  GDR+ESEI      D+PYR
Sbjct: 120 THIFEYHGEKRGDLYFTKDMLLAVGDRYESEIAAAREADAPYR 162


>gi|154278457|ref|XP_001540042.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           precursor [Ajellomyces capsulatus NAm1]
 gi|150413627|gb|EDN09010.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           precursor [Ajellomyces capsulatus NAm1]
          Length = 225

 Score =  164 bits (415), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 99/160 (61%), Positives = 113/160 (70%), Gaps = 12/160 (7%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
                 +  + E +               TI YPFEKG  SPRFRGEHALRRYP+GEERC
Sbjct: 78  LDKAGKYFLMTEMLRGI-----------YTIFYPFEKGPISPRFRGEHALRRYPSGEERC 126

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPA AITIE+  R  DG+RRT RYDIDM KCIYCG CQE+CPVDAIVE PN
Sbjct: 127 IACKLCEAICPALAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQESCPVDAIVESPN 185

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            E+ATETR+EL Y+KE+LL NGD+WE E+      D+PYR
Sbjct: 186 AEYATETREELLYNKEKLLANGDKWEPELAAVARADAPYR 225


>gi|294670450|ref|ZP_06735332.1| hypothetical protein NEIELOOT_02169 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307914|gb|EFE49157.1| hypothetical protein NEIELOOT_02169 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 159

 Score =  164 bits (415), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 89/158 (56%), Positives = 106/158 (67%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
             V    L E V    + L+ FF  K TI +P EK   S RFRG HA RRYPNGEERCIA
Sbjct: 3   NLVKTFLLGELVKGMGVTLKNFFARKDTIYFPEEKTPQSVRFRGLHAQRRYPNGEERCIA 62

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEA+CPA AI IES  R  DGTRRT+RYDID+ KCI+CG C+EACP DAIVE   FE
Sbjct: 63  CKLCEAVCPAMAINIESEER-EDGTRRTIRYDIDLTKCIFCGFCEEACPTDAIVETHIFE 121

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           +  E + +L+  K  LL  GD++E+EI +    D+PYR
Sbjct: 122 YHGEKKGDLHMTKPILLAIGDKYEAEIAKRKAADAPYR 159


>gi|15676175|ref|NP_273307.1| NADH dehydrogenase subunit I [Neisseria meningitidis MC58]
 gi|59802064|ref|YP_208776.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae FA 1090]
 gi|121634122|ref|YP_974367.1| NADH dehydrogenase subunit I [Neisseria meningitidis FAM18]
 gi|161870814|ref|YP_001599987.1| NADH dehydrogenase subunit I [Neisseria meningitidis 053442]
 gi|194099639|ref|YP_002002770.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae NCCP11945]
 gi|218767059|ref|YP_002341571.1| NADH dehydrogenase subunit I [Neisseria meningitidis Z2491]
 gi|225077027|ref|ZP_03720226.1| hypothetical protein NEIFLAOT_02079 [Neisseria flavescens
           NRL30031/H210]
 gi|240014994|ref|ZP_04721907.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae DGI18]
 gi|240017442|ref|ZP_04723982.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae FA6140]
 gi|240081581|ref|ZP_04726124.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae FA19]
 gi|240113863|ref|ZP_04728353.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae MS11]
 gi|240116594|ref|ZP_04730656.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae PID18]
 gi|240118818|ref|ZP_04732880.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae PID1]
 gi|240122063|ref|ZP_04735025.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae PID24-1]
 gi|240124357|ref|ZP_04737313.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae PID332]
 gi|240126569|ref|ZP_04739455.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae SK-92-679]
 gi|240129034|ref|ZP_04741695.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae SK-93-1035]
 gi|241760745|ref|ZP_04758837.1| NADH-quinone oxidoreductase, i subunit [Neisseria flavescens SK114]
 gi|254494618|ref|ZP_05107789.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae 1291]
 gi|254805706|ref|YP_003083927.1| NADH dehydrogenase I chain I [Neisseria meningitidis alpha14]
 gi|255067292|ref|ZP_05319147.1| NADH dehydrogenase, I subunit [Neisseria sicca ATCC 29256]
 gi|260439645|ref|ZP_05793461.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae DGI2]
 gi|261364357|ref|ZP_05977240.1| NADH dehydrogenase, I subunit [Neisseria mucosa ATCC 25996]
 gi|261378531|ref|ZP_05983104.1| NADH dehydrogenase, I subunit [Neisseria cinerea ATCC 14685]
 gi|268685149|ref|ZP_06152011.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae
           SK-92-679]
 gi|298370371|ref|ZP_06981687.1| NADH dehydrogenase (ubiquinone), I subunit [Neisseria sp. oral
           taxon 014 str. F0314]
 gi|75355482|sp|Q5F623|NUOI_NEIG1 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|81542192|sp|Q9JQM2|NUOI_NEIMA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|81832764|sp|Q7DDS1|NUOI_NEIMB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|156633533|sp|A1KRT1|NUOI_NEIMF RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|7225474|gb|AAF40705.1| NADH dehydrogenase I, I subunit [Neisseria meningitidis MC58]
 gi|59718959|gb|AAW90364.1| putative NADH dehydrogenase I chain I [Neisseria gonorrhoeae FA
           1090]
 gi|120865828|emb|CAM09560.1| NADH dehydrogenase I chain I [Neisseria meningitidis FAM18]
 gi|121051067|emb|CAM07337.1| NADH dehydrogenase I chain I [Neisseria meningitidis Z2491]
 gi|161596367|gb|ABX74027.1| NADH dehydrogenase I chain I [Neisseria meningitidis 053442]
 gi|193934929|gb|ACF30753.1| NADH dehydrogenase I chain I [Neisseria gonorrhoeae NCCP11945]
 gi|224951584|gb|EEG32793.1| hypothetical protein NEIFLAOT_02079 [Neisseria flavescens
           NRL30031/H210]
 gi|226513658|gb|EEH63003.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae 1291]
 gi|241318926|gb|EER55452.1| NADH-quinone oxidoreductase, i subunit [Neisseria flavescens SK114]
 gi|254669248|emb|CBA08124.1| NADH dehydrogenase I chain I [Neisseria meningitidis alpha14]
 gi|254670964|emb|CBA07648.1| NADH-ubiquinone oxidoreductase, chain I [Neisseria meningitidis
           alpha153]
 gi|254674112|emb|CBA09896.1| NADH-ubiquinone oxidoreductase, chain I [Neisseria meningitidis
           alpha275]
 gi|255048443|gb|EET43907.1| NADH dehydrogenase, I subunit [Neisseria sicca ATCC 29256]
 gi|268625433|gb|EEZ57833.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae
           SK-92-679]
 gi|269145081|gb|EEZ71499.1| NADH dehydrogenase, I subunit [Neisseria cinerea ATCC 14685]
 gi|288567621|gb|EFC89181.1| NADH dehydrogenase, I subunit [Neisseria mucosa ATCC 25996]
 gi|298281831|gb|EFI23320.1| NADH dehydrogenase (ubiquinone), I subunit [Neisseria sp. oral
           taxon 014 str. F0314]
 gi|316985179|gb|EFV64131.1| NADH-quinone oxidoreductase subunit 9 [Neisseria meningitidis
           H44/76]
 gi|319411266|emb|CBY91673.1| NADH-quinone oxidoreductase chain I (NADH dehydrogenase I, chain I;
           NDH-1, chain I) [Neisseria meningitidis WUE 2594]
 gi|325129047|gb|EGC51897.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis
           N1568]
 gi|325131604|gb|EGC54311.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis
           M6190]
 gi|325135054|gb|EGC57682.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis
           M13399]
 gi|325137077|gb|EGC59673.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis
           M0579]
 gi|325139141|gb|EGC61687.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis
           ES14902]
 gi|325141087|gb|EGC63590.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis
           CU385]
 gi|325143091|gb|EGC65438.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis
           961-5945]
 gi|325143161|gb|EGC65507.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis
           961-5945]
 gi|325145244|gb|EGC67523.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis
           M01-240013]
 gi|325145315|gb|EGC67593.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis
           M01-240013]
 gi|325197536|gb|ADY92992.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis
           G2136]
 gi|325199454|gb|ADY94909.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis
           H44/76]
 gi|325202921|gb|ADY98375.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis
           M01-240149]
 gi|325203367|gb|ADY98820.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis
           M01-240355]
 gi|325205336|gb|ADZ00789.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis
           M04-240196]
 gi|325207280|gb|ADZ02732.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis
           NZ-05/33]
          Length = 159

 Score =  164 bits (415), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 89/158 (56%), Positives = 105/158 (66%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
             V    L E V    + L+ FF  K TI +P EK   S RFRG HA RRYPNGEERCIA
Sbjct: 3   NLVKTFLLGELVKGMGVTLKNFFARKDTIYFPEEKTPQSVRFRGLHAQRRYPNGEERCIA 62

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEA+CPA AI IES  R  DGTRRT RYDID+ KCI+CG C+EACP DAIVE   FE
Sbjct: 63  CKLCEAVCPAMAINIESEER-EDGTRRTKRYDIDLTKCIFCGFCEEACPTDAIVETHIFE 121

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           +  E + +L+  K  LL  GD++E+EI +    D+PYR
Sbjct: 122 YHGEKKGDLHMTKPILLAIGDKYEAEIAKRKAADAPYR 159


>gi|62262897|gb|AAX78111.1| unknown protein [synthetic construct]
          Length = 197

 Score =  164 bits (414), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 80/163 (49%), Positives = 103/163 (63%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           MR     +    L E +    +  ++FF  K T+ YP EK   S RFRG HALRRY NGE
Sbjct: 27  MRNITNFLKTFLLWELLKGLKVTGKHFFTRKVTVQYPDEKTPISNRFRGLHALRRYENGE 86

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCE +CPA AITI S  R  DGTRRT  Y++D+ KCI+CG C+E+CPVD+IVE
Sbjct: 87  ERCIACKLCEVVCPALAITINSTER-EDGTRRTSSYEMDLFKCIFCGYCEESCPVDSIVE 145

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               E+  E R E    K +LL  GD++E++I  + + D  +R
Sbjct: 146 TNILEYHFEERGENIMTKAKLLAIGDKYEAQIAADRLQDKDFR 188


>gi|307293262|ref|ZP_07573108.1| NADH-quinone oxidoreductase, chain I [Sphingobium chlorophenolicum
           L-1]
 gi|306881328|gb|EFN12544.1| NADH-quinone oxidoreductase, chain I [Sphingobium chlorophenolicum
           L-1]
          Length = 161

 Score =  164 bits (414), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 116/158 (73%), Positives = 128/158 (81%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
             V    L EFV A +L L+YFFK K TINYP+EK   SPRFRGEHALRRYPNGEERCIA
Sbjct: 5   YYVKSFTLWEFVKAHWLTLKYFFKPKATINYPYEKNPISPRFRGEHALRRYPNGEERCIA 64

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEAICPAQAITIE+ PR  DG+RRT RYDIDM KCIYCG CQEACPVDA+VEGPNFE
Sbjct: 65  CKLCEAICPAQAITIEAQPR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAVVEGPNFE 123

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           F+TETR+EL YDK +LL NGD+WE  I  N+  D+PYR
Sbjct: 124 FSTETREELIYDKAKLLENGDKWERAIAANLAADAPYR 161


>gi|56707219|ref|YP_169115.1| NADH dehydrogenase subunit I [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89257082|ref|YP_514444.1| NADH dehydrogenase subunit I [Francisella tularensis subsp.
           holarctica LVS]
 gi|110669689|ref|YP_666246.1| NADH dehydrogenase subunit I [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115315439|ref|YP_764162.1| NADH dehydrogenase subunit I [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134301254|ref|YP_001121222.1| NADH dehydrogenase subunit I [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|167009474|ref|ZP_02274405.1| NADH dehydrogenase subunit I [Francisella tularensis subsp.
           holarctica FSC200]
 gi|187930996|ref|YP_001890980.1| NADH dehydrogenase subunit I [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|224456280|ref|ZP_03664753.1| NADH dehydrogenase subunit I [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254368318|ref|ZP_04984336.1| NADH dehydrogenase I, I subunit [Francisella tularensis subsp.
           holarctica 257]
 gi|254368973|ref|ZP_04984986.1| NADH dehydrogenase subunit I [Francisella tularensis subsp.
           holarctica FSC022]
 gi|254371435|ref|ZP_04987436.1| NADH dehydrogenase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874057|ref|ZP_05246767.1| NADH-quinone oxidoreductase subunit I [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|81598102|sp|Q5NIM7|NUOI_FRATT RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|115502530|sp|Q2A1F8|NUOI_FRATH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|122324576|sp|Q0BK59|NUOI_FRATO RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|123169702|sp|Q14K30|NUOI_FRAT1 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|156633520|sp|A4IW00|NUOI_FRATW RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|226737393|sp|B2SEV7|NUOI_FRATM RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|54114125|gb|AAV29696.1| NT02FT1744 [synthetic construct]
 gi|56603711|emb|CAG44672.1| NADH dehydrogenase I, I subunit [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89144913|emb|CAJ80261.1| NADH dehydrogenase I, I subunit [Francisella tularensis subsp.
           holarctica LVS]
 gi|110320022|emb|CAL08055.1| NADH dehydrogenase I, I subunit [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115130338|gb|ABI83525.1| NADH dehydrogenase (ubiquinone) [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134049031|gb|ABO46102.1| NADH dehydrogenase I subunit I [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134254126|gb|EBA53220.1| NADH dehydrogenase I, I subunit [Francisella tularensis subsp.
           holarctica 257]
 gi|151569674|gb|EDN35328.1| NADH dehydrogenase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|157121894|gb|EDO66064.1| NADH dehydrogenase subunit I [Francisella tularensis subsp.
           holarctica FSC022]
 gi|187711905|gb|ACD30202.1| NADH dehydrogenase I, I subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|254840056|gb|EET18492.1| NADH-quinone oxidoreductase subunit I [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|282158327|gb|ADA77718.1| NADH dehydrogenase subunit I [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 162

 Score =  164 bits (414), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 80/163 (49%), Positives = 103/163 (63%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           MR     +    L E +    +  ++FF  K T+ YP EK   S RFRG HALRRY NGE
Sbjct: 1   MRNITNFLKTFLLWELLKGLKVTGKHFFTRKVTVQYPDEKTPISNRFRGLHALRRYENGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCE +CPA AITI S  R  DGTRRT  Y++D+ KCI+CG C+E+CPVD+IVE
Sbjct: 61  ERCIACKLCEVVCPALAITINSTER-EDGTRRTSSYEMDLFKCIFCGYCEESCPVDSIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               E+  E R E    K +LL  GD++E++I  + + D  +R
Sbjct: 120 TNILEYHFEERGENIMTKAKLLAIGDKYEAQIAADRLQDKDFR 162


>gi|42520793|ref|NP_966708.1| NADH dehydrogenase subunit I [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|99034611|ref|ZP_01314569.1| hypothetical protein Wendoof_01000619 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
 gi|81652312|sp|Q73GH4|NUOI_WOLPM RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|42410533|gb|AAS14642.1| NADH dehydrogenase I, I subunit [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 169

 Score =  164 bits (414), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 106/160 (66%), Positives = 121/160 (75%), Gaps = 1/160 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           + +    +    E +  F + L+Y FK K T+ YP EKG  SPRFRGEHALRRYPNGEER
Sbjct: 10  MLKKLAWYWSFVELIKGFVITLKYMFKPKVTLRYPMEKGPLSPRFRGEHALRRYPNGEER 69

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCE ICPAQAI IE+  R  DG+RRT RYDIDMIKCIYCGLCQEACPVDAIVEGP
Sbjct: 70  CIACKLCEVICPAQAIVIEAEER-EDGSRRTTRYDIDMIKCIYCGLCQEACPVDAIVEGP 128

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPY 162
           NFEFATETR+EL Y+KE+LL NG+ WE  I   +  + PY
Sbjct: 129 NFEFATETREELMYNKEKLLRNGEVWEDAIALRLKKNRPY 168


>gi|268597677|ref|ZP_06131844.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae FA19]
 gi|268599929|ref|ZP_06134096.1| NADH-ubiquinone oxidoreductase [Neisseria gonorrhoeae MS11]
 gi|268602263|ref|ZP_06136430.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae PID18]
 gi|268604529|ref|ZP_06138696.1| NADH-ubiquinone oxidoreductase [Neisseria gonorrhoeae PID1]
 gi|268682984|ref|ZP_06149846.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae
           PID332]
 gi|268687412|ref|ZP_06154274.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291042886|ref|ZP_06568627.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae DGI2]
 gi|293398104|ref|ZP_06642309.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae F62]
 gi|304389075|ref|ZP_07371119.1| NADH-quinone oxidoreductase subunit I [Neisseria meningitidis ATCC
           13091]
 gi|268551465|gb|EEZ46484.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae FA19]
 gi|268584060|gb|EEZ48736.1| NADH-ubiquinone oxidoreductase [Neisseria gonorrhoeae MS11]
 gi|268586394|gb|EEZ51070.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae PID18]
 gi|268588660|gb|EEZ53336.1| NADH-ubiquinone oxidoreductase [Neisseria gonorrhoeae PID1]
 gi|268623268|gb|EEZ55668.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae
           PID332]
 gi|268627696|gb|EEZ60096.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae
           SK-93-1035]
 gi|291013320|gb|EFE05286.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae DGI2]
 gi|291611367|gb|EFF40437.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae F62]
 gi|304336948|gb|EFM03138.1| NADH-quinone oxidoreductase subunit I [Neisseria meningitidis ATCC
           13091]
          Length = 164

 Score =  164 bits (414), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 89/158 (56%), Positives = 105/158 (66%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
             V    L E V    + L+ FF  K TI +P EK   S RFRG HA RRYPNGEERCIA
Sbjct: 8   NLVKTFLLGELVKGMGVTLKNFFARKDTIYFPEEKTPQSVRFRGLHAQRRYPNGEERCIA 67

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEA+CPA AI IES  R  DGTRRT RYDID+ KCI+CG C+EACP DAIVE   FE
Sbjct: 68  CKLCEAVCPAMAINIESEER-EDGTRRTKRYDIDLTKCIFCGFCEEACPTDAIVETHIFE 126

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           +  E + +L+  K  LL  GD++E+EI +    D+PYR
Sbjct: 127 YHGEKKGDLHMTKPILLAIGDKYEAEIAKRKAADAPYR 164


>gi|58584728|ref|YP_198301.1| NADH dehydrogenase subunit I [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
 gi|75507969|sp|Q5GSG5|NUOI_WOLTR RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|58419044|gb|AAW71059.1| NADH:ubiquinone oxidoreductase chain I [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 160

 Score =  163 bits (413), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 105/160 (65%), Positives = 118/160 (73%), Gaps = 1/160 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           + +    +    E +  F + LRY FK K T+ YP EKG  SPRFRGEHALRRY NGEER
Sbjct: 1   MLKKLAWYWSFVELIKGFIITLRYAFKPKVTLKYPMEKGPLSPRFRGEHALRRYSNGEER 60

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCE ICPAQAI IE+  R  DG+RRT RYDIDM KCIYCGLCQEACPVDAIVEGP
Sbjct: 61  CIACKLCEVICPAQAIVIEAEER-EDGSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGP 119

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPY 162
           NFEFATETR+EL Y+KE+LL NG+ WE  I   +  D  Y
Sbjct: 120 NFEFATETREELMYNKEKLLRNGEIWEEAIALRLKKDVSY 159


>gi|94496472|ref|ZP_01303049.1| NADH-quinone oxidoreductase, chain I [Sphingomonas sp. SKA58]
 gi|94424218|gb|EAT09242.1| NADH-quinone oxidoreductase, chain I [Sphingomonas sp. SKA58]
          Length = 161

 Score =  163 bits (413), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 115/158 (72%), Positives = 126/158 (79%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
             V    L EFV A  L L+YFFK K TINYP+EK   SPRFRGEHALRRYPNGEERCIA
Sbjct: 5   YYVKSFTLWEFVKAHALTLKYFFKPKATINYPYEKNPISPRFRGEHALRRYPNGEERCIA 64

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEA+CPAQAITIE+ PR   G+RRT RYDIDM KCIYCG CQEACPVDA+VEGPNFE
Sbjct: 65  CKLCEAVCPAQAITIEAQPRDD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAVVEGPNFE 123

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FATETR+EL YDK +LL NGD+WE  I  N+  D+PYR
Sbjct: 124 FATETREELIYDKAKLLENGDKWERAIAANLAADAPYR 161


>gi|319638825|ref|ZP_07993583.1| NADH-quinone oxidoreductase subunit I [Neisseria mucosa C102]
 gi|317399729|gb|EFV80392.1| NADH-quinone oxidoreductase subunit I [Neisseria mucosa C102]
          Length = 159

 Score =  163 bits (413), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 89/158 (56%), Positives = 104/158 (65%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
             V    L E V    + L+ FF  K TI +P EK   S RFRG HA RRYPNGEERCIA
Sbjct: 3   NLVKTFLLGELVKGMGVTLKNFFARKDTIYFPEEKTPQSVRFRGLHAQRRYPNGEERCIA 62

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEA+CPA AI IES  R  DGTRRT RYDID+ KCI+CG C+EACP DAIVE   FE
Sbjct: 63  CKLCEAVCPAMAINIESEER-EDGTRRTKRYDIDLTKCIFCGFCEEACPTDAIVETHIFE 121

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           +  E + +L+  K  LL  GD++E EI +    D+PYR
Sbjct: 122 YHGEKKGDLHMTKPILLAIGDKYEPEIAKRKAADAPYR 159


>gi|291613546|ref|YP_003523703.1| NADH-quinone oxidoreductase, chain I [Sideroxydans lithotrophicus
           ES-1]
 gi|291583658|gb|ADE11316.1| NADH-quinone oxidoreductase, chain I [Sideroxydans lithotrophicus
           ES-1]
          Length = 162

 Score =  163 bits (413), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 86/163 (52%), Positives = 105/163 (64%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M+          L E +    +  RYFF    T+ YP EK   S RFRG HA RRYPNGE
Sbjct: 1   MKNLINFFKSFLLLELLKGMSVTGRYFFARHITVEYPEEKTPQSFRFRGLHAQRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCI CKLCEA+CPA AI IE   R  DGTRRT RYDID++KCI+CG C+E+CPVDAIVE
Sbjct: 61  ERCIGCKLCEAVCPALAIKIEVAER-EDGTRRTTRYDIDLVKCIFCGFCEESCPVDAIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
              FE+  E+R +LYY K  LL  G+++E +I  +   D+ YR
Sbjct: 120 TRVFEYHGESRGDLYYTKPMLLAMGEKYEEQIAMDRAADAKYR 162


>gi|241667723|ref|ZP_04755301.1| NADH dehydrogenase subunit I [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876267|ref|ZP_05248977.1| NADH-quinone oxidoreductase subunit I [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254842288|gb|EET20702.1| NADH-quinone oxidoreductase subunit I [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 162

 Score =  163 bits (413), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 80/163 (49%), Positives = 102/163 (62%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           MR          L E +    +  ++FF  K T+ YP EK   S RFRG HALRRY NGE
Sbjct: 1   MRNITSFFKTFLLWELLKGMRVTGKHFFTRKVTVQYPDEKTPISNRFRGLHALRRYENGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCE +CPA AITI S  R  DG+RRT  Y+ID+ KCI+CG C+E+CPVD+IVE
Sbjct: 61  ERCIACKLCEVVCPALAITINSTER-EDGSRRTSSYEIDLFKCIFCGYCEESCPVDSIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               E+  E R E    K +LL  GD++E++I  + + D  +R
Sbjct: 120 TNILEYHFEERGENIMTKAKLLAIGDKYEAQIAADRLQDKDFR 162


>gi|190571400|ref|YP_001975758.1| NADH dehydrogenase I, I subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|190357672|emb|CAQ55116.1| NADH dehydrogenase I, I subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
          Length = 160

 Score =  163 bits (413), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 105/160 (65%), Positives = 120/160 (75%), Gaps = 1/160 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           + +    +    E +  F + L+Y FK K T+ YP EKG  SPRFRGEHALRRYPNGEER
Sbjct: 1   MLKKLAWYWSSVELIKGFVITLKYMFKPKVTLRYPMEKGPLSPRFRGEHALRRYPNGEER 60

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIACKLCE ICPAQAI IE+  R  DG+RRT RYDIDM KCIYCGLCQEACPVDAIVEGP
Sbjct: 61  CIACKLCEVICPAQAIVIEAEER-EDGSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGP 119

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPY 162
           NFEFATETR+EL Y+KE+LL NG+ WE  I   +  + PY
Sbjct: 120 NFEFATETREELMYNKEKLLRNGEVWEEAIALRLKKNRPY 159


>gi|307182361|gb|EFN69628.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial [Camponotus floridanus]
          Length = 146

 Score =  163 bits (412), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 105/147 (71%), Positives = 118/147 (80%), Gaps = 1/147 (0%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           +    L +   F+   TINYPFEKG  SPRFRGEHALRRYP+GEERCIACKLCEAICPAQ
Sbjct: 1   MRGMGLIVSQIFREPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQ 60

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
           AITIE+  R   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFEF++ET +E+ Y
Sbjct: 61  AITIEAEERAD-GSRRTTRYDIDMSKCIYCGFCQEACPVDAIVEGPNFEFSSETHEEMLY 119

Query: 137 DKERLLNNGDRWESEIVRNIVTDSPYR 163
           +KE+LLNNGD+WESEI  NI  D  YR
Sbjct: 120 NKEKLLNNGDKWESEIASNIHADHLYR 146


>gi|294788068|ref|ZP_06753312.1| NADH dehydrogenase (ubiquinone), I subunit [Simonsiella muelleri
           ATCC 29453]
 gi|294484361|gb|EFG32044.1| NADH dehydrogenase (ubiquinone), I subunit [Simonsiella muelleri
           ATCC 29453]
          Length = 159

 Score =  163 bits (412), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 90/158 (56%), Positives = 106/158 (67%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
                  L E V    + L+ FF  K TI +P EK   S RFRG HA RRYPNGEERCIA
Sbjct: 3   NFFKTFLLGELVKGMGVTLKNFFVRKDTIYFPEEKTPQSVRFRGLHAQRRYPNGEERCIA 62

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEA+CPA AI IES  R  DGTRRT RYDID+ KCI+CG C+EACPVDAIVE   FE
Sbjct: 63  CKLCEAVCPAMAINIESEER-EDGTRRTTRYDIDLTKCIFCGFCEEACPVDAIVETHIFE 121

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           +  E R +L+  K  LL  GD++E+EI +  + D+PYR
Sbjct: 122 YHGEKRGDLHMTKPILLAIGDKYEAEIAKRKMADAPYR 159


>gi|239999835|ref|ZP_04719759.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae 35/02]
 gi|317165124|gb|ADV08665.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 159

 Score =  163 bits (412), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 88/158 (55%), Positives = 104/158 (65%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
             V    L E V    + L+ FF  K TI +P EK   S RFRG HA R YPNGEERCIA
Sbjct: 3   NLVKTFLLGELVKGMGVTLKNFFARKDTIYFPEEKTPQSVRFRGLHAQRCYPNGEERCIA 62

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEA+CPA AI IES  R  DGTRRT RYDID+ KCI+CG C+EACP DAIVE   FE
Sbjct: 63  CKLCEAVCPAMAINIESEER-EDGTRRTKRYDIDLTKCIFCGFCEEACPTDAIVETHIFE 121

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           +  E + +L+  K  LL  GD++E+EI +    D+PYR
Sbjct: 122 YHGEKKGDLHMTKPILLAIGDKYEAEIAKRKAADAPYR 159


>gi|78485170|ref|YP_391095.1| NADH dehydrogenase subunit I [Thiomicrospira crunogena XCL-2]
 gi|115502545|sp|Q31HF2|NUOI_THICR RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|78363456|gb|ABB41421.1| NADH dehydrogenase I chain I [Thiomicrospira crunogena XCL-2]
          Length = 163

 Score =  163 bits (412), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 89/160 (55%), Positives = 103/160 (64%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
            +  V    L E      +  +Y FK K T+ YP EK   SPRFRG HALRRY NGEERC
Sbjct: 5   IKHQVKTFGLIELFKGLAVTGKYLFKKKITVRYPEEKTPLSPRFRGHHALRRYENGEERC 64

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEA+CPA AITIES  R   GTRRT +YDIDM KCIYCG C+EACPVDA+VE   
Sbjct: 65  IACKLCEAVCPANAITIESEERDD-GTRRTTQYDIDMFKCIYCGFCEEACPVDAVVETRV 123

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FE+    R      KE+LL  GD+ ES+I  +   D+ YR
Sbjct: 124 FEYEFHERGTHIMTKEQLLAFGDKHESQIAADRAADAKYR 163


>gi|268595645|ref|ZP_06129812.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae 35/02]
 gi|268549034|gb|EEZ44452.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae 35/02]
          Length = 164

 Score =  162 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 88/158 (55%), Positives = 104/158 (65%), Gaps = 1/158 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
             V    L E V    + L+ FF  K TI +P EK   S RFRG HA R YPNGEERCIA
Sbjct: 8   NLVKTFLLGELVKGMGVTLKNFFARKDTIYFPEEKTPQSVRFRGLHAQRCYPNGEERCIA 67

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEA+CPA AI IES  R  DGTRRT RYDID+ KCI+CG C+EACP DAIVE   FE
Sbjct: 68  CKLCEAVCPAMAINIESEER-EDGTRRTKRYDIDLTKCIFCGFCEEACPTDAIVETHIFE 126

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           +  E + +L+  K  LL  GD++E+EI +    D+PYR
Sbjct: 127 YHGEKKGDLHMTKPILLAIGDKYEAEIAKRKAADAPYR 164


>gi|322706310|gb|EFY97891.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Metarhizium
           anisopliae ARSEF 23]
          Length = 247

 Score =  162 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 97/189 (51%), Positives = 118/189 (62%), Gaps = 28/189 (14%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAK------TTINYPFEKGSTSPRFRGEHALRR 55
           +       +  L E     ++ +  FF+         T++    +G  SPRFRGEHALRR
Sbjct: 60  KTLDRLGKYFLLTEMARGMYVLMEQFFRPPTTHLDMATVSIDTTQGPISPRFRGEHALRR 119

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           YP+GEERCIACKLCEAICPAQAITIE+  R   G+RRT RYDIDM KCIYCG CQE+CPV
Sbjct: 120 YPSGEERCIACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQESCPV 178

Query: 116 DAIVEGPNFEFATETRQELYYDK---------------------ERLLNNGDRWESEIVR 154
           DAIVE PN E+ATETR+EL Y+K                     E+LL+NGD+WE E+  
Sbjct: 179 DAIVESPNAEYATETREELLYNKGRLNHSAHASRVASLLILFAAEKLLSNGDKWEPELAA 238

Query: 155 NIVTDSPYR 163
            I  D+PYR
Sbjct: 239 AIRADAPYR 247


>gi|198284338|ref|YP_002220659.1| NADH dehydrogenase subunit I [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218668010|ref|YP_002427000.1| NADH-quinone oxidoreductase, I subunit [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198248859|gb|ACH84452.1| NADH-quinone oxidoreductase, chain I [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218520223|gb|ACK80809.1| NADH-quinone oxidoreductase, I subunit [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 163

 Score =  162 bits (411), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 91/159 (57%), Positives = 107/159 (67%), Gaps = 1/159 (0%)

Query: 5   RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64
           R   +  FL E +    L  RYFF  K T+ YP E+   SPRFRG HALRRY NGEERCI
Sbjct: 6   RQWFNTFFLTEMLRGMQLTGRYFFARKITVQYPEEQTPQSPRFRGLHALRRYANGEERCI 65

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           ACKLCEA+CPA AITIES  R   GTRRT RYDID+ KCI+CGLC+E+CPVD+IVE    
Sbjct: 66  ACKLCEAVCPALAITIESDVRSD-GTRRTTRYDIDLSKCIFCGLCEESCPVDSIVESRVL 124

Query: 125 EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            +  E R +L Y K+ LL NGDR E+E+  +   D  YR
Sbjct: 125 SYHGEIRGDLIYTKDMLLANGDRLEAELAADRDADRAYR 163


>gi|237746743|ref|ZP_04577223.1| NADH-quinone oxidoreductase subunit I [Oxalobacter formigenes
           HOxBLS]
 gi|229378094|gb|EEO28185.1| NADH-quinone oxidoreductase subunit I [Oxalobacter formigenes
           HOxBLS]
          Length = 162

 Score =  162 bits (410), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 86/163 (52%), Positives = 107/163 (65%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   R       L E +    L ++  F+ K T+ YP EK   SPRFRG HAL R  NGE
Sbjct: 1   MSAIRHFFRTFALTELIQGLALTMKVMFRRKATVRYPEEKTPLSPRFRGMHALMRDENGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCI CKLCEA+CPA+AI IE+G R  DG+RRT RY+ID  KCI+CGLC+EACPVDAIVE
Sbjct: 61  ERCIGCKLCEAVCPAKAILIETGER-EDGSRRTTRYEIDQSKCIFCGLCEEACPVDAIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            P FE++ + + +L + KE LL+ G  +E EI      D+PYR
Sbjct: 120 IPMFEYSADEKGDLVFGKEVLLSVGKTYEREIREAKEADAPYR 162


>gi|319779206|ref|YP_004130119.1| NADH-ubiquinone oxidoreductase chain I [Taylorella equigenitalis
           MCE9]
 gi|317109230|gb|ADU91976.1| NADH-ubiquinone oxidoreductase chain I [Taylorella equigenitalis
           MCE9]
          Length = 161

 Score =  162 bits (410), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 88/162 (54%), Positives = 108/162 (66%), Gaps = 1/162 (0%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
             F  + + LFL E +    +  +YFFK K T+ YP+EK   SPRFRG HA RRY NGEE
Sbjct: 1   MSFAKSFAGLFLTELLKGMAVTGKYFFKPKFTLRYPYEKTPMSPRFRGLHAQRRYENGEE 60

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLCEA+CPA AITIES  R  DG R+T RYDID+ KCI+CG C+E+CPV+AIVE 
Sbjct: 61  RCIACKLCEAVCPAMAITIESHER-EDGARKTSRYDIDLTKCIFCGFCEESCPVEAIVET 119

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
              E+  E   +LY+ K+ LL  GD++E EI      D  YR
Sbjct: 120 HIHEYHGEKASDLYFTKDMLLAIGDKYEPEIAARRAIDGKYR 161


>gi|11466187|ref|NP_066510.1| NADH dehydrogenase subunit 8 [Naegleria gruberi]
 gi|10444222|gb|AAG17788.1|AF288092_13 NADH dehydrogenase subunit 8 [Naegleria gruberi]
          Length = 159

 Score =  161 bits (408), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 99/160 (61%), Positives = 120/160 (75%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
              +  +L+L E +   F+ L+  F  K TINYPFEKG+ SPRFRGEHALRRY NGEERC
Sbjct: 1   MFSSFQYLYLSELMRGLFVALKNLFSKKVTINYPFEKGAISPRFRGEHALRRYSNGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCE +CPA AITI+S  + + G+R+T RYDIDM KCIYCGLCQEACPVDAIVE  N
Sbjct: 61  IACKLCEVVCPALAITIDSAQQLN-GSRQTTRYDIDMTKCIYCGLCQEACPVDAIVESFN 119

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FE++T T  EL YDK++LL NGD++E EI  N+  +  YR
Sbjct: 120 FEYSTFTHDELLYDKKKLLANGDKFEIEIYLNLKKEILYR 159


>gi|224009321|ref|XP_002293619.1| NADH dehydrogenase [Thalassiosira pseudonana CCMP1335]
 gi|220971019|gb|EED89355.1| NADH dehydrogenase [Thalassiosira pseudonana CCMP1335]
          Length = 150

 Score =  161 bits (406), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 105/151 (69%), Positives = 122/151 (80%), Gaps = 1/151 (0%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           + E   AF+L      K K TINYP+EKG  SPRFRGEHALRRYP+G+ERCIACKLCEA 
Sbjct: 1   MTEIWRAFWLSGEVALKPKVTINYPYEKGYLSPRFRGEHALRRYPSGDERCIACKLCEAA 60

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           CPAQAITI++  R  DG RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFEFATET +
Sbjct: 61  CPAQAITIDAEER-EDGARRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHE 119

Query: 133 ELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           EL YDKE+LL+NGD+WE +I +N++++  YR
Sbjct: 120 ELLYDKEKLLSNGDKWEKQIAKNLLSEHLYR 150


>gi|260223136|emb|CBA33398.1| NADH-quinone oxidoreductase subunit I [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 146

 Score =  160 bits (405), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 87/147 (59%), Positives = 104/147 (70%), Gaps = 1/147 (0%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           +    L  RY F+ K T+ +P EK   SPRFRG HALRRY NGEERCIACKLCEA+CPA 
Sbjct: 1   MKGMALTGRYLFRRKVTVQFPEEKTPLSPRFRGLHALRRYENGEERCIACKLCEAVCPAM 60

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
           AITIES  R   G+RRT RYDID+ KCI+CG C+E+CPVD+IVE    E+  E R +LY+
Sbjct: 61  AITIESDVRDD-GSRRTTRYDIDLTKCIFCGFCEESCPVDSIVETHILEYHGEKRGDLYF 119

Query: 137 DKERLLNNGDRWESEIVRNIVTDSPYR 163
            K+ LL  GDR+ESEI  N   D+ YR
Sbjct: 120 TKDMLLAVGDRYESEIAANKQADAKYR 146


>gi|170091616|ref|XP_001877030.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164648523|gb|EDR12766.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 143

 Score =  160 bits (404), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 101/144 (70%), Positives = 114/144 (79%), Gaps = 1/144 (0%)

Query: 20  FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79
            ++ +  FF+   TI YPFEKG  SPRFRGEHALRRYP+GEERCIACKLCEAICPAQAIT
Sbjct: 1   MWIVMENFFRPPYTIMYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAIT 60

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139
           IES  R   G+R+T +YDIDM KCIYCG CQEACPVDAIVE  N EF+TETR+EL Y+KE
Sbjct: 61  IESEARLD-GSRKTTKYDIDMTKCIYCGFCQEACPVDAIVETQNQEFSTETREELLYNKE 119

Query: 140 RLLNNGDRWESEIVRNIVTDSPYR 163
           +LL NGDR ESEI  N+  D  YR
Sbjct: 120 KLLANGDRAESEIAANLHADHVYR 143


>gi|319787435|ref|YP_004146910.1| NADH-quinone oxidoreductase, chain I [Pseudoxanthomonas suwonensis
           11-1]
 gi|317465947|gb|ADV27679.1| NADH-quinone oxidoreductase, chain I [Pseudoxanthomonas suwonensis
           11-1]
          Length = 162

 Score =  159 bits (403), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 93/163 (57%), Positives = 105/163 (64%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M         L L E V    L  RY F+ K T+ YP EK   SPRFRG HALRRYPNGE
Sbjct: 1   MNKVVHYFKSLLLWELVKGLALTFRYLFRPKYTMMYPMEKFPQSPRFRGLHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITI+S  R  DGTRRT RYDID+ KCIYCG C+E+CPVD+IVE
Sbjct: 61  ERCIACKLCEAVCPALAITIDSA-RREDGTRRTTRYDIDLFKCIYCGFCEESCPVDSIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               E+  E R E    K +LL  GDR E+EI      D+ YR
Sbjct: 120 THVMEYHFERRGENIVTKPQLLALGDRLEAEIAERRAADAAYR 162


>gi|89900294|ref|YP_522765.1| NADH dehydrogenase subunit I [Rhodoferax ferrireducens T118]
 gi|115502541|sp|Q21YB9|NUOI_RHOFD RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|89345031|gb|ABD69234.1| NADH-quinone oxidoreductase, chain I [Rhodoferax ferrireducens
           T118]
          Length = 177

 Score =  159 bits (403), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 88/160 (55%), Positives = 108/160 (67%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
            +  +S   L E      L  +Y F++K T+ YP EK   SPRFRG HALRRY NGEERC
Sbjct: 19  LKDFLSSFMLSELFKGLALTGKYAFRSKITLEYPEEKTPLSPRFRGLHALRRYENGEERC 78

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPA AITIES  R   G+RRT RYDID+ KCI+CG C+E+CPVD+IVE   
Sbjct: 79  IACKLCEAICPAMAITIESEVRAD-GSRRTTRYDIDLNKCIFCGFCEESCPVDSIVETSI 137

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            E+  E+R +LY+ K+ LL  GDR+E +I      D+ YR
Sbjct: 138 LEYHGESRSDLYFTKDMLLAVGDRYEPQIAAARAADAKYR 177


>gi|329909995|ref|ZP_08275180.1| NADH-ubiquinone oxidoreductase chain I [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327546332|gb|EGF31351.1| NADH-ubiquinone oxidoreductase chain I [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 162

 Score =  159 bits (403), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 93/163 (57%), Positives = 110/163 (67%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   +   S L L+E      L  RY F  K T+ +P EK   SPRFRG HALRRYPNGE
Sbjct: 1   MEAIKDFFSSLMLRELFKGMALTGRYMFARKITVQFPEEKTPQSPRFRGLHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIES  R   G+RRT RYDID+ KCI+CG C+E+CPVD+IVE
Sbjct: 61  ERCIACKLCEAVCPAMAITIESEQRDD-GSRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               E+  E R +LYY KE LL  GDR+E++I      D+PYR
Sbjct: 120 TSILEYHGEKRGDLYYTKEMLLAVGDRYENDIAAARAADAPYR 162


>gi|153874620|ref|ZP_02002769.1| NADH-quinone oxidoreductase, chain I [Beggiatoa sp. PS]
 gi|152068913|gb|EDN67228.1| NADH-quinone oxidoreductase, chain I [Beggiatoa sp. PS]
          Length = 150

 Score =  159 bits (402), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 89/151 (58%), Positives = 107/151 (70%), Gaps = 1/151 (0%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           + E +    L  RY FK K TI YP EK   S RFRG HALRRYPNGEERCIACKLCEA+
Sbjct: 1   MWELMKGMNLTGRYLFKRKITIQYPEEKTPMSHRFRGHHALRRYPNGEERCIACKLCEAV 60

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           CPA AITIE+ PR  DGTRRT RYDID+ KCI+CG C+E+CPVD+IVE   FE+  E R 
Sbjct: 61  CPALAITIEAAPR-EDGTRRTTRYDIDLTKCIFCGYCEESCPVDSIVETRFFEYHGEQRG 119

Query: 133 ELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           +L   K++LL  GDR+E ++  +   D+ YR
Sbjct: 120 DLLMTKDKLLAMGDRFEKQLAADRSLDAQYR 150


>gi|160900604|ref|YP_001566186.1| NADH dehydrogenase subunit I [Delftia acidovorans SPH-1]
 gi|160366188|gb|ABX37801.1| NADH-quinone oxidoreductase, chain I [Delftia acidovorans SPH-1]
          Length = 169

 Score =  159 bits (402), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 88/160 (55%), Positives = 106/160 (66%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
            +  +    L E      L  RY F+ K T+ +P EK   SPRFRG HALRRY NGEERC
Sbjct: 11  IKDFLKSFMLWELAKGMALTGRYTFRRKVTVQFPEEKTPLSPRFRGLHALRRYDNGEERC 70

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEA+CPA AITIES  R   G+RRT RYDID+ KCI+CG C+E+CPVD+IVE   
Sbjct: 71  IACKLCEAVCPAMAITIESDVRDD-GSRRTTRYDIDLTKCIFCGFCEESCPVDSIVETHI 129

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FE+  E R +LY+ K+ LL  GDR+E EI      D+ YR
Sbjct: 130 FEYHGEKRGDLYFTKDMLLAVGDRYEPEIAAAKAADAKYR 169


>gi|237748883|ref|ZP_04579363.1| NADH-quinone oxidoreductase subunit I [Oxalobacter formigenes
           OXCC13]
 gi|229380245|gb|EEO30336.1| NADH-quinone oxidoreductase subunit I [Oxalobacter formigenes
           OXCC13]
          Length = 162

 Score =  159 bits (401), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 86/163 (52%), Positives = 106/163 (65%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M+  +       L E +    L LR  F+ K T+ YP EK   SPRFRG HAL R  NGE
Sbjct: 1   MKTIKHFFKTFSLIELIQGMALTLRVMFRRKATVRYPEEKTPLSPRFRGMHALMRDENGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E+CI CKLCE++CPA+AI IE+  R  DGTRRT RYDID  KCI+CGLC+EACPVDAIVE
Sbjct: 61  EKCIGCKLCESVCPAKAILIETEER-EDGTRRTTRYDIDQSKCIFCGLCEEACPVDAIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            P FE++ + + +L + KE LL  GD ++ EI      D PYR
Sbjct: 120 IPMFEYSADGKNDLLFSKEVLLKVGDTYKEEIKEAKDADEPYR 162


>gi|171058193|ref|YP_001790542.1| NADH dehydrogenase subunit I [Leptothrix cholodnii SP-6]
 gi|170775638|gb|ACB33777.1| NADH-quinone oxidoreductase, chain I [Leptothrix cholodnii SP-6]
          Length = 165

 Score =  159 bits (401), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 90/159 (56%), Positives = 109/159 (68%), Gaps = 1/159 (0%)

Query: 5   RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64
           +  VS   L E +    L  R+FF+   T+ +P EK   SPRFRG HALRRY NGEERCI
Sbjct: 8   KDFVSSFMLLELLKGLKLTGRHFFQRTVTVQFPEEKTPLSPRFRGLHALRRYENGEERCI 67

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           ACKLCEA+CPA AITIES  R   G+RRT RYDID+ KCI+CG C+E+CPVD+IVE   F
Sbjct: 68  ACKLCEAVCPAMAITIESDVRAD-GSRRTTRYDIDLTKCIFCGFCEESCPVDSIVETHIF 126

Query: 125 EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           E+  E R +LY+ K+ LL  GDR+E EI  N   D+ YR
Sbjct: 127 EYHGEKRGDLYFTKDMLLAVGDRYEQEIAANKEADAKYR 165


>gi|300311103|ref|YP_003775195.1| NADH dehydrogenase I subunit I [Herbaspirillum seropedicae SmR1]
 gi|300073888|gb|ADJ63287.1| NADH dehydrogenase I (Chain I) oxidoreductase protein
           [Herbaspirillum seropedicae SmR1]
          Length = 162

 Score =  158 bits (400), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 94/163 (57%), Positives = 109/163 (66%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   +     L L+E      L  RY FK K T+ +P EK   SPRFRG HALRRYPNGE
Sbjct: 1   MEAIKDFFGSLMLRELFKGLALTGRYLFKRKITVQFPEEKTPMSPRFRGLHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIES  R   GTRRT RYDID+ KCI+CG C+E+CPVD+IVE
Sbjct: 61  ERCIACKLCEAVCPAMAITIESEQRAD-GTRRTSRYDIDLTKCIFCGFCEESCPVDSIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               E+  E R +LYY KE LL  GDR+E+EI      D+ YR
Sbjct: 120 THILEYHGEKRGDLYYTKEMLLAVGDRYENEIAAARAADAAYR 162


>gi|328860549|gb|EGG09655.1| hypothetical protein MELLADRAFT_29188 [Melampsora larici-populina
           98AG31]
          Length = 150

 Score =  158 bits (400), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 97/148 (65%), Positives = 108/148 (72%), Gaps = 1/148 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
                   FL E     ++ L   F+   TI YPFEKG  SPRFRGEHALRRY +GEERC
Sbjct: 3   LDKAAKLFFLTEIARGMWVVLEQMFRPPFTIMYPFEKGPVSPRFRGEHALRRYASGEERC 62

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAITIES  R   G RRT RYD+DM KCIYCG CQEACPVDAIVE  N
Sbjct: 63  IACKLCEAICPAQAITIESETRLD-GARRTTRYDLDMTKCIYCGFCQEACPVDAIVESQN 121

Query: 124 FEFATETRQELYYDKERLLNNGDRWESE 151
            E++TETR+EL Y+KE+LL NGDR E+E
Sbjct: 122 TEYSTETREELLYNKEKLLANGDRMEAE 149


>gi|134095023|ref|YP_001100098.1| NADH dehydrogenase subunit I [Herminiimonas arsenicoxydans]
 gi|156633522|sp|A4G636|NUOI_HERAR RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|133738926|emb|CAL61973.1| NADH-quinone oxidoreductase subunit I (NADH dehydrogenase I subunit
           I) (NDH-1 subunit I) [Herminiimonas arsenicoxydans]
          Length = 162

 Score =  158 bits (400), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 93/163 (57%), Positives = 110/163 (67%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   +     L L+E +    L  RY F  K T+ +P EK   SPRFRG HALRRYPNGE
Sbjct: 1   MEAIKDFFGSLMLREMLKGMALTGRYMFSRKITVQFPEEKTPQSPRFRGLHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIES  R   G+RRT RYDID+ KCI+CG C+E+CPVD+IVE
Sbjct: 61  ERCIACKLCEAVCPAMAITIESEQRDD-GSRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
              FE+  E R +LYY KE LL  GDR+E+EI      D+ YR
Sbjct: 120 THIFEYHGEKRGDLYYTKEMLLAVGDRYETEIAAARTADAAYR 162


>gi|73540672|ref|YP_295192.1| NADH dehydrogenase subunit I [Ralstonia eutropha JMP134]
 gi|115502538|sp|Q473T5|NUOI_RALEJ RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|72118085|gb|AAZ60348.1| NADH-quinone oxidoreductase, chain I [Ralstonia eutropha JMP134]
          Length = 163

 Score =  158 bits (400), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 92/160 (57%), Positives = 108/160 (67%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
            +   + L LKE      L  RY F  K T+ +P EK   SPRFRG HALRRYPNGEERC
Sbjct: 5   IKDFFNSLLLKELFKGMALTGRYLFARKVTVQFPEEKTPISPRFRGLHALRRYPNGEERC 64

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEA+CPA AITIES  R   GTRRT RYDID+ KCI+CG C+EACPVDA+VE P 
Sbjct: 65  IACKLCEAVCPALAITIESDVRAD-GTRRTTRYDIDLTKCIFCGFCEEACPVDAVVETPI 123

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            E+  E R +LY+ K+ LL  GDR+E +I      D+ YR
Sbjct: 124 LEYHGEKRGDLYFTKDMLLAVGDRYEPQIAAAKAADAKYR 163


>gi|113867078|ref|YP_725567.1| NADH dehydrogenase subunit I [Ralstonia eutropha H16]
 gi|194289167|ref|YP_002005074.1| NADH dehydrogenase subunit i [Cupriavidus taiwanensis LMG 19424]
 gi|123033156|sp|Q0KCS2|NUOI_RALEH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|226737389|sp|B3R3X5|NUOI_CUPTR RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|113525854|emb|CAJ92199.1| NADH dehydrogenase chain I [Ralstonia eutropha H16]
 gi|193223002|emb|CAQ69007.1| NADH:ubiquinone oxidoreductase complex I, chain I [Cupriavidus
           taiwanensis LMG 19424]
          Length = 163

 Score =  158 bits (399), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 92/160 (57%), Positives = 107/160 (66%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
            +   + L LKE      L  RY F  K T+ +P EK   SPRFRG HALRRYPNGEERC
Sbjct: 5   IKDFFNSLLLKELFKGMALTGRYLFARKITVQFPEEKTPISPRFRGLHALRRYPNGEERC 64

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEA+CPA AITIES  R   GTRRT RYDID+ KCI+CG C+EACPVDAIVE   
Sbjct: 65  IACKLCEAVCPALAITIESDARAD-GTRRTTRYDIDLTKCIFCGFCEEACPVDAIVETQI 123

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            E+  E R +LY+ K+ LL  GDR+E +I      D+ YR
Sbjct: 124 LEYHGEKRGDLYFTKDMLLAVGDRYEPQIAAAKAADAKYR 163


>gi|222110094|ref|YP_002552358.1| NADH dehydrogenase subunit I [Acidovorax ebreus TPSY]
 gi|221729538|gb|ACM32358.1| NADH-quinone oxidoreductase, chain I [Acidovorax ebreus TPSY]
          Length = 170

 Score =  158 bits (399), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 89/160 (55%), Positives = 106/160 (66%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
            +       L E      L  RY F+ K T+ +P EK   SPRFRG HALRRY NGEERC
Sbjct: 12  IKDFFKSFMLWELAKGMALTGRYTFRRKVTVQFPEEKTPLSPRFRGLHALRRYDNGEERC 71

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEA+CPA AITIES  R  DG+RRT RYDID+ KCI+CG C+E+CPVD+IVE   
Sbjct: 72  IACKLCEAVCPALAITIESDVR-EDGSRRTTRYDIDLTKCIFCGFCEESCPVDSIVETQI 130

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FE+  E R +LY+ K+ LL  GDR+E EI      D+ YR
Sbjct: 131 FEYHGEKRGDLYFTKDMLLAVGDRYEPEIAAAKAADAKYR 170


>gi|254797156|ref|YP_003081994.1| NADH-quinone oxidoreductase subunit i [Neorickettsia risticii str.
           Illinois]
 gi|254590388|gb|ACT69750.1| NADH-quinone oxidoreductase subunit i [Neorickettsia risticii str.
           Illinois]
          Length = 160

 Score =  158 bits (399), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 102/156 (65%), Positives = 117/156 (75%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
               +  + L  F   F   LRYFF  K TI YP EKG  S RFRGEHALRRY NGEERC
Sbjct: 1   MFKFLRQMQLTRFFVGFRTVLRYFFAPKVTIKYPQEKGPISLRFRGEHALRRYKNGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCE ICPAQAITIE+ PR  DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGPN
Sbjct: 61  IACKLCEVICPAQAITIEAAPRESDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 120

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
           FEFA E R++L Y+KE+LL+NG +WES +++ +  +
Sbjct: 121 FEFARENREDLLYNKEKLLDNGSKWESALIKMLNKN 156


>gi|33597903|ref|NP_885546.1| NADH dehydrogenase subunit I [Bordetella parapertussis 12822]
 gi|33574332|emb|CAE38668.1| NADH-ubiquinone oxidoreductase, chain I [Bordetella parapertussis]
          Length = 147

 Score =  157 bits (398), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 91/148 (61%), Positives = 106/148 (71%), Gaps = 1/148 (0%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 L  +YFFK K T+ YP EK  TS RFRG HALRRYPNGEERCIACKLCEA+CPA
Sbjct: 1   MFKGLRLTGKYFFKRKVTLRYPMEKTPTSARFRGLHALRRYPNGEERCIACKLCEAVCPA 60

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            AITIES  R   GTRRT RYDID+ KCI+CG C+E+CPVD+IVE    E+  E R +LY
Sbjct: 61  LAITIESEQRDD-GTRRTTRYDIDLTKCIFCGFCEESCPVDSIVETHIHEYHGEKRGDLY 119

Query: 136 YDKERLLNNGDRWESEIVRNIVTDSPYR 163
           + K+ LL  GDR+E+EI R    D+PYR
Sbjct: 120 FTKDMLLAVGDRYEAEIARRRAEDAPYR 147


>gi|94309880|ref|YP_583090.1| NADH dehydrogenase subunit I [Cupriavidus metallidurans CH34]
 gi|115502539|sp|Q1LPV5|NUOI_RALME RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|93353732|gb|ABF07821.1| NADH:ubiquinone oxidoreductase, chain I [Cupriavidus metallidurans
           CH34]
          Length = 163

 Score =  157 bits (397), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 91/160 (56%), Positives = 107/160 (66%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
            +   + L LKE      L  RY F  K T+ +P EK   SPRFRG HALRRYPNGEERC
Sbjct: 5   IKDFFNSLLLKELFKGMALTGRYLFARKITVQFPEEKTPMSPRFRGLHALRRYPNGEERC 64

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEA+CPA AI+IES  R   GTRRT RYDID+ KCI+CG C+EACPVDAIVE   
Sbjct: 65  IACKLCEAVCPALAISIESDVRND-GTRRTTRYDIDLTKCIFCGFCEEACPVDAIVETHI 123

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            E+  E R +LY+ K+ LL  GDR+E +I      D+ YR
Sbjct: 124 LEYHGEKRGDLYFTKDMLLAVGDRYEPQIAAAKAADAKYR 163


>gi|241763296|ref|ZP_04761353.1| NADH-quinone oxidoreductase, chain I [Acidovorax delafieldii 2AN]
 gi|241367571|gb|EER61858.1| NADH-quinone oxidoreductase, chain I [Acidovorax delafieldii 2AN]
          Length = 169

 Score =  157 bits (396), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 88/160 (55%), Positives = 105/160 (65%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
            +       L E V    L  RY F+ K T+ +P EK   SPRFRG HALRRY NGEERC
Sbjct: 11  LKDFFKSFMLVELVKGMALTGRYAFRRKVTVQFPEEKTPLSPRFRGLHALRRYDNGEERC 70

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEA+CPA AITIES  R   G+RRT RYDID+ KCI+CG C+E+CPVD+IVE   
Sbjct: 71  IACKLCEAVCPAMAITIESDVRAD-GSRRTTRYDIDLTKCIFCGFCEESCPVDSIVETHI 129

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            E+  E R +LY+ K+ LL  GDR+E EI      D+ YR
Sbjct: 130 LEYHGEKRGDLYFTKDMLLAVGDRYEGEIAAAKAADAKYR 169


>gi|152980715|ref|YP_001353160.1| NADH dehydrogenase subunit I [Janthinobacterium sp. Marseille]
 gi|151280792|gb|ABR89202.1| NADH dehydrogenase I chain I [Janthinobacterium sp. Marseille]
          Length = 162

 Score =  157 bits (396), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 94/163 (57%), Positives = 108/163 (66%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   +     L L+E      L  RY F  K T+ +P EK   SPRFRG HALRRYPNGE
Sbjct: 1   MEAIKDFFGSLMLRELFKGLALTGRYMFARKITVQFPEEKTPQSPRFRGLHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIES  R  DGTRRT RYDID+ KCI+CG C+E+CPVD+IVE
Sbjct: 61  ERCIACKLCEAVCPAMAITIESDQR-EDGTRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               E+  E R +LYY KE LL  GDR+E EI      D+ YR
Sbjct: 120 THILEYHGEKRGDLYYTKEMLLAVGDRYEPEIAAARTADAAYR 162


>gi|83719559|ref|YP_441622.1| NADH dehydrogenase subunit I [Burkholderia thailandensis E264]
 gi|167580430|ref|ZP_02373304.1| NADH dehydrogenase subunit I [Burkholderia thailandensis TXDOH]
 gi|167618539|ref|ZP_02387170.1| NADH dehydrogenase subunit I [Burkholderia thailandensis Bt4]
 gi|257139682|ref|ZP_05587944.1| NADH dehydrogenase subunit I [Burkholderia thailandensis E264]
 gi|115502522|sp|Q2SZM7|NUOI_BURTA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|83653384|gb|ABC37447.1| NADH dehydrogenase I, I subunit [Burkholderia thailandensis E264]
          Length = 162

 Score =  157 bits (396), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 91/163 (55%), Positives = 107/163 (65%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   +      FL E +    L  RY FK K T+ +P EK   SPRFRG HALRRY NGE
Sbjct: 1   MTAIQQFFKTFFLTELLKGLALTGRYTFKRKFTVQFPEEKTPISPRFRGLHALRRYENGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIES  R  + TRRT RYDID+ KCI+CG C+E+CPVD+IVE
Sbjct: 61  ERCIACKLCEAVCPAMAITIESETRADN-TRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               E+  E R +LY+ KE LL  GDR+E EI      D+ YR
Sbjct: 120 TQILEYHGEKRGDLYFTKEMLLAVGDRYEKEIAAAKAADARYR 162


>gi|167562185|ref|ZP_02355101.1| NADH dehydrogenase subunit I [Burkholderia oklahomensis EO147]
 gi|167569430|ref|ZP_02362304.1| NADH dehydrogenase subunit I [Burkholderia oklahomensis C6786]
          Length = 162

 Score =  157 bits (396), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 91/163 (55%), Positives = 107/163 (65%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   +      FL E +    L  RY FK K T+ +P EK   SPRFRG HALRRY NGE
Sbjct: 1   MTAIQQFFKTFFLTELLKGLALTGRYTFKRKFTVQFPEEKTPISPRFRGLHALRRYENGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIES  R  + TRRT RYDID+ KCI+CG C+E+CPVD+IVE
Sbjct: 61  ERCIACKLCEAVCPALAITIESETRADN-TRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               E+  E R +LY+ KE LL  GDR+E EI      D+ YR
Sbjct: 120 TQILEYHGEKRGDLYFTKEMLLAVGDRYEKEIAAAKAADARYR 162


>gi|78067038|ref|YP_369807.1| NADH dehydrogenase subunit I [Burkholderia sp. 383]
 gi|115502521|sp|Q39EF3|NUOI_BURS3 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|77967783|gb|ABB09163.1| NADH dehydrogenase subunit I [Burkholderia sp. 383]
          Length = 162

 Score =  157 bits (396), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 91/163 (55%), Positives = 108/163 (66%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   +      FL E +    L  RY FK K T+ +P EK   SPRFRG HALRRY NGE
Sbjct: 1   MSAIQHFFKTFFLTELLQGLALTGRYTFKRKVTVQFPEEKTPISPRFRGLHALRRYENGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIES  R  + TRRT RYDID+ KCI+CG C+E+CPVD+IVE
Sbjct: 61  ERCIACKLCEAVCPAMAITIESETRADN-TRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               E+  E R +LY+ KE LL  GDR+E +I      D+PYR
Sbjct: 120 TQILEYHGEKRGDLYFTKEMLLAVGDRYEKDIAAAKAADAPYR 162


>gi|220934170|ref|YP_002513069.1| NADH-quinone oxidoreductase, chain I [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995480|gb|ACL72082.1| NADH-quinone oxidoreductase, chain I [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 163

 Score =  157 bits (396), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 92/160 (57%), Positives = 105/160 (65%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
            R       L E +    L  RY F  K T+ YP EK   SPRFRG HALRRYPNGEERC
Sbjct: 5   IRNFFKSFMLWELLIGMRLTGRYLFARKITVQYPEEKTPMSPRFRGLHALRRYPNGEERC 64

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEA+CPA AITIES  R   GTRRT RYDID+ KCI+CG C+EACPVD+IVE   
Sbjct: 65  IACKLCEAVCPALAITIESEQRAD-GTRRTTRYDIDLFKCIFCGFCEEACPVDSIVETHL 123

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FE+  E R E    K++LL  GDR+E +I      D+PYR
Sbjct: 124 FEYHFENRGEQIMTKDKLLAIGDRYEQQIAAARAADAPYR 163


>gi|117926901|ref|YP_867518.1| NADH dehydrogenase subunit I [Magnetococcus sp. MC-1]
 gi|156633523|sp|A0LDR9|NUOI_MAGSM RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|117610657|gb|ABK46112.1| NADH dehydrogenase subunit I [Magnetococcus sp. MC-1]
          Length = 164

 Score =  157 bits (396), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 83/162 (51%), Positives = 102/162 (62%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
              +  ++ L L+E      + LRY F+   TI YP E+   SPRFRG H LRRY  GEE
Sbjct: 3   NAMKQLMASLALRELWQGMAVTLRYMFRPNITIQYPEERTPYSPRFRGIHVLRRYEGGEE 62

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RC+ACKLCEAICPAQAI IE         R T  YDID+ KCIYCGLC+EACPV+AIV G
Sbjct: 63  RCVACKLCEAICPAQAIYIEIDTESRADKRLTKVYDIDLFKCIYCGLCEEACPVEAIVMG 122

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           P  + A E R   +Y K++LL NG+ W +EI   +  D+ YR
Sbjct: 123 PYLDMAYEDRNARFYKKDQLLANGESWRAEIDARLNADAKYR 164


>gi|53718855|ref|YP_107841.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei K96243]
 gi|53725807|ref|YP_103426.1| NADH dehydrogenase subunit I [Burkholderia mallei ATCC 23344]
 gi|67642184|ref|ZP_00440944.1| NADH-quinone oxidoreductase, i subunit [Burkholderia mallei GB8
           horse 4]
 gi|76809047|ref|YP_332852.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei 1710b]
 gi|121600349|ref|YP_992477.1| NADH dehydrogenase subunit I [Burkholderia mallei SAVP1]
 gi|124383581|ref|YP_001026720.1| NADH dehydrogenase subunit I [Burkholderia mallei NCTC 10229]
 gi|126448769|ref|YP_001079995.1| NADH dehydrogenase subunit I [Burkholderia mallei NCTC 10247]
 gi|126452103|ref|YP_001065585.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei 1106a]
 gi|134283892|ref|ZP_01770588.1| NADH dehydrogenase I, I subunit [Burkholderia pseudomallei 305]
 gi|167000360|ref|ZP_02266178.1| NADH dehydrogenase I, I subunit [Burkholderia mallei PRL-20]
 gi|167718853|ref|ZP_02402089.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei DM98]
 gi|167737861|ref|ZP_02410635.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei 14]
 gi|167815044|ref|ZP_02446724.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei 91]
 gi|167823460|ref|ZP_02454931.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei 9]
 gi|167845012|ref|ZP_02470520.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei B7210]
 gi|167893553|ref|ZP_02480955.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei 7894]
 gi|167901999|ref|ZP_02489204.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei NCTC 13177]
 gi|167910235|ref|ZP_02497326.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei 112]
 gi|167918268|ref|ZP_02505359.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei BCC215]
 gi|217420048|ref|ZP_03451554.1| NADH dehydrogenase I, I subunit [Burkholderia pseudomallei 576]
 gi|226195304|ref|ZP_03790893.1| NADH dehydrogenase I, I subunit [Burkholderia pseudomallei Pakistan
           9]
 gi|237811590|ref|YP_002896041.1| NADH-quinone oxidoreductase subunit i (NADH dehydrogenase i subunit
           i) (ndh-1 subunit i) [Burkholderia pseudomallei MSHR346]
 gi|242314671|ref|ZP_04813687.1| NADH dehydrogenase I, I subunit [Burkholderia pseudomallei 1106b]
 gi|254175738|ref|ZP_04882398.1| NADH dehydrogenase I, I subunit [Burkholderia mallei ATCC 10399]
 gi|254181179|ref|ZP_04887776.1| NADH-quinone oxidoreductase, I subunit [Burkholderia pseudomallei
           1655]
 gi|254190542|ref|ZP_04897049.1| NADH-quinone oxidoreductase, I subunit [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254195148|ref|ZP_04901577.1| NADH-quinone oxidoreductase, I subunit [Burkholderia pseudomallei
           S13]
 gi|254202102|ref|ZP_04908465.1| NADH dehydrogenase I, I subunit [Burkholderia mallei FMH]
 gi|254207432|ref|ZP_04913782.1| NADH dehydrogenase I, I subunit [Burkholderia mallei JHU]
 gi|254260039|ref|ZP_04951093.1| NADH-quinone oxidoreductase, I subunit [Burkholderia pseudomallei
           1710a]
 gi|254298541|ref|ZP_04965993.1| NADH-quinone oxidoreductase, I subunit [Burkholderia pseudomallei
           406e]
 gi|254359854|ref|ZP_04976124.1| NADH dehydrogenase I, I subunit [Burkholderia mallei 2002721280]
 gi|81380042|sp|Q63VM5|NUOI_BURPS RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|81604658|sp|Q62IP3|NUOI_BURMA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|115502520|sp|Q3JUA1|NUOI_BURP1 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|156633514|sp|A3NTB4|NUOI_BURP0 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|166918786|sp|A3MIA9|NUOI_BURM7 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|166918787|sp|A2S451|NUOI_BURM9 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|166918788|sp|A1V2M4|NUOI_BURMS RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|52209269|emb|CAH35214.1| putative NADH dehydrogenase I chain I [Burkholderia pseudomallei
           K96243]
 gi|52429230|gb|AAU49823.1| NADH dehydrogenase I, I subunit [Burkholderia mallei ATCC 23344]
 gi|76578500|gb|ABA47975.1| NADH dehydrogenase I, I subunit [Burkholderia pseudomallei 1710b]
 gi|121229159|gb|ABM51677.1| NADH dehydrogenase I, I subunit [Burkholderia mallei SAVP1]
 gi|124291601|gb|ABN00870.1| NADH dehydrogenase I, I subunit [Burkholderia mallei NCTC 10229]
 gi|126225745|gb|ABN89285.1| NADH dehydrogenase I, I subunit [Burkholderia pseudomallei 1106a]
 gi|126241639|gb|ABO04732.1| NADH dehydrogenase I, I subunit [Burkholderia mallei NCTC 10247]
 gi|134244681|gb|EBA44779.1| NADH dehydrogenase I, I subunit [Burkholderia pseudomallei 305]
 gi|147746349|gb|EDK53426.1| NADH dehydrogenase I, I subunit [Burkholderia mallei FMH]
 gi|147751326|gb|EDK58393.1| NADH dehydrogenase I, I subunit [Burkholderia mallei JHU]
 gi|148029094|gb|EDK86999.1| NADH dehydrogenase I, I subunit [Burkholderia mallei 2002721280]
 gi|157808385|gb|EDO85555.1| NADH-quinone oxidoreductase, I subunit [Burkholderia pseudomallei
           406e]
 gi|157938217|gb|EDO93887.1| NADH-quinone oxidoreductase, I subunit [Burkholderia pseudomallei
           Pasteur 52237]
 gi|160696782|gb|EDP86752.1| NADH dehydrogenase I, I subunit [Burkholderia mallei ATCC 10399]
 gi|169651896|gb|EDS84589.1| NADH-quinone oxidoreductase, I subunit [Burkholderia pseudomallei
           S13]
 gi|184211717|gb|EDU08760.1| NADH-quinone oxidoreductase, I subunit [Burkholderia pseudomallei
           1655]
 gi|217397352|gb|EEC37368.1| NADH dehydrogenase I, I subunit [Burkholderia pseudomallei 576]
 gi|225932506|gb|EEH28504.1| NADH dehydrogenase I, I subunit [Burkholderia pseudomallei Pakistan
           9]
 gi|237504518|gb|ACQ96836.1| NADH-quinone oxidoreductase subunit i (NADH dehydrogenase i subunit
           i) (ndh-1 subunit i) [Burkholderia pseudomallei MSHR346]
 gi|238523280|gb|EEP86719.1| NADH-quinone oxidoreductase, i subunit [Burkholderia mallei GB8
           horse 4]
 gi|242137910|gb|EES24312.1| NADH dehydrogenase I, I subunit [Burkholderia pseudomallei 1106b]
 gi|243063694|gb|EES45880.1| NADH dehydrogenase I, I subunit [Burkholderia mallei PRL-20]
 gi|254218728|gb|EET08112.1| NADH-quinone oxidoreductase, I subunit [Burkholderia pseudomallei
           1710a]
          Length = 162

 Score =  156 bits (395), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 90/163 (55%), Positives = 107/163 (65%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   +      FL E +    L  RY FK K T+ +P EK   SPRFRG HALRRY NGE
Sbjct: 1   MTAIQQFFKTFFLTELLKGLALTGRYTFKRKFTVQFPEEKTPISPRFRGLHALRRYENGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIES  R  + TRRT RYDID+ KCI+CG C+E+CPVD+IVE
Sbjct: 61  ERCIACKLCEAVCPALAITIESETRADN-TRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               E+  E R +LY+ K+ LL  GDR+E EI      D+ YR
Sbjct: 120 TQILEYHGEKRGDLYFTKDMLLAVGDRYEKEIAAAKAADARYR 162


>gi|312796893|ref|YP_004029815.1| NADH-quinone oxidoreductase chain I [Burkholderia rhizoxinica HKI
           454]
 gi|312168668|emb|CBW75671.1| NADH-quinone oxidoreductase chain I (EC 1.6.5.3) [Burkholderia
           rhizoxinica HKI 454]
          Length = 162

 Score =  156 bits (395), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 89/163 (54%), Positives = 109/163 (66%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   +      FL E +    L  RY F+ K T+ +P EK   SPRFRG HALRRY NGE
Sbjct: 1   MNAIQNFFKTFFLTELLKGLALTGRYAFQRKITVQFPEEKTPISPRFRGLHALRRYENGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIES  R  + TRRT RYDID+ KCI+CG C+E+CPVD+IVE
Sbjct: 61  ERCIACKLCEAVCPALAITIESEVRADN-TRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               E+  E R +LY+ K+ LL  GDR+E++I      D+PYR
Sbjct: 120 TQILEYHGEKRGDLYFTKDMLLAVGDRYEAQIAAAKAADAPYR 162


>gi|121998536|ref|YP_001003323.1| NADH dehydrogenase subunit I [Halorhodospira halophila SL1]
 gi|156633521|sp|A1WXV9|NUOI_HALHL RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|121589941|gb|ABM62521.1| NADH dehydrogenase subunit I [Halorhodospira halophila SL1]
          Length = 163

 Score =  156 bits (395), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 85/164 (51%), Positives = 106/164 (64%), Gaps = 2/164 (1%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYF-FKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59
           MR     ++     E +    L  R+  F+   T+ +P E+   SPRFRG  ALRRYPNG
Sbjct: 1   MRPLNDYLNSFLFTELLRGLRLTARHMVFRRSITLEFPEERAPKSPRFRGHLALRRYPNG 60

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           EERCIACKLCEA+CPA AITI+S  R   GTRRT RYDIDM KCIYCG C+E+CPVD+IV
Sbjct: 61  EERCIACKLCEAVCPALAITIDSHQRAD-GTRRTTRYDIDMFKCIYCGFCEESCPVDSIV 119

Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
                 F  E R E   DK++LL  GD++ES++  +   D+PYR
Sbjct: 120 LTRLDTFHMERRDERVADKQKLLAMGDKYESQLAADRAADAPYR 163


>gi|319761770|ref|YP_004125707.1| NADH-quinone oxidoreductase, chain i [Alicycliphilus denitrificans
           BC]
 gi|330826550|ref|YP_004389853.1| NAD(P)H-quinone oxidoreductase subunit I [Alicycliphilus
           denitrificans K601]
 gi|317116331|gb|ADU98819.1| NADH-quinone oxidoreductase, chain I [Alicycliphilus denitrificans
           BC]
 gi|329311922|gb|AEB86337.1| NAD(P)H-quinone oxidoreductase subunit I [Alicycliphilus
           denitrificans K601]
          Length = 170

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 89/160 (55%), Positives = 104/160 (65%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
            +       L E      L  RY F+ K T+ +P EK   SPRFRG HALRRY NGEERC
Sbjct: 12  IKDFFKSFMLWELAKGMVLTGRYAFRGKVTVQFPEEKTPLSPRFRGLHALRRYDNGEERC 71

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEA+CPA AITIES  R   GTRRT RYDID+ KCI+CG C+E+CPVD+IVE   
Sbjct: 72  IACKLCEAVCPAMAITIESDVRSD-GTRRTTRYDIDLTKCIFCGFCEESCPVDSIVETQI 130

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            E+  E R +LY+ KE LL  GDR+E EI      D+ YR
Sbjct: 131 LEYHGEKRGDLYFTKEMLLAVGDRYEPEIAAAKAADAKYR 170


>gi|57239100|ref|YP_180236.1| NADH dehydrogenase subunit I [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58579047|ref|YP_197259.1| NADH dehydrogenase subunit I [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58617106|ref|YP_196305.1| NADH dehydrogenase subunit I [Ehrlichia ruminantium str. Gardel]
 gi|75507519|sp|Q5FHN1|NUOI_EHRRG RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|81672815|sp|Q5HBF8|NUOI_EHRRW RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|57161179|emb|CAH58093.1| NADH-quinone oxidoreductase chain I [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58416718|emb|CAI27831.1| NADH-quinone oxidoreductase chain I [Ehrlichia ruminantium str.
           Gardel]
 gi|58417673|emb|CAI26877.1| NADH-quinone oxidoreductase chain I [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 168

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 100/146 (68%), Positives = 112/146 (76%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
               ++ LRY FK K T+NYP EK   S RFRGEHALR Y NGEERCIACKLCEAICPAQ
Sbjct: 22  FKGMYITLRYMFKPKVTLNYPLEKNPLSTRFRGEHALRTYKNGEERCIACKLCEAICPAQ 81

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
           AITIE+  R  D +RRTVRYDIDM KCIYCG CQEACPVDAIVEGPNFE+ATETR+EL Y
Sbjct: 82  AITIEAQERDTDNSRRTVRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEYATETREELMY 141

Query: 137 DKERLLNNGDRWESEIVRNIVTDSPY 162
           +K +LL+NG  WE  I   I  +S +
Sbjct: 142 NKSKLLHNGQIWEEAIDLRIKKNSKF 167


>gi|121593385|ref|YP_985281.1| NADH dehydrogenase subunit I [Acidovorax sp. JS42]
 gi|156632699|sp|A1W4N0|NUOI_ACISJ RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|120605465|gb|ABM41205.1| NADH dehydrogenase subunit I [Acidovorax sp. JS42]
          Length = 170

 Score =  156 bits (393), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 89/160 (55%), Positives = 106/160 (66%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
            +       L E      L  RY F+ K T+ +P EK   SPRFRG HALRRY NGEERC
Sbjct: 12  IKDFFKSFMLWELAKGMALTGRYTFRRKVTVQFPEEKTPLSPRFRGLHALRRYENGEERC 71

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEA+CPA AITIES  R   G+RRT RYDID+ KCI+CG C+E+CPVD+IVE P 
Sbjct: 72  IACKLCEAVCPAVAITIESDVRAD-GSRRTTRYDIDLTKCIFCGFCEESCPVDSIVETPI 130

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           FE+  E R +LY+ K+ LL  GDR+E EI      D+ YR
Sbjct: 131 FEYHGEKRGDLYFTKDMLLAVGDRYEPEIAAAKAADAKYR 170


>gi|126439381|ref|YP_001058346.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei 668]
 gi|166918789|sp|A3N7M5|NUOI_BURP6 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|126218874|gb|ABN82380.1| NADH-quinone oxidoreductase, I subunit [Burkholderia pseudomallei
           668]
          Length = 162

 Score =  156 bits (393), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 89/163 (54%), Positives = 107/163 (65%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   +      FL E +    L  RY FK K T+ +P EK   SPRFRG HALRRY NGE
Sbjct: 1   MTAIQQFFKTFFLTELLKGLALTGRYTFKRKFTVQFPEEKTPISPRFRGLHALRRYENGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIES  R  + TRRT RYDID+ KCI+CG C+E+CPVD+IVE
Sbjct: 61  ERCIACKLCEAVCPALAITIESETRADN-TRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               E+  E R +LY+ K+ LL  GDR+E E+      D+ YR
Sbjct: 120 TQILEYHGEKRGDLYFTKDMLLAVGDRYEKEVAAAKAADARYR 162


>gi|34581178|ref|ZP_00142658.1| NADH dehydrogenase I chain I [Rickettsia sibirica 246]
 gi|28262563|gb|EAA26067.1| NADH dehydrogenase I chain I [Rickettsia sibirica 246]
          Length = 143

 Score =  156 bits (393), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 105/144 (72%), Positives = 113/144 (78%), Gaps = 1/144 (0%)

Query: 20  FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79
             L L+YFFK K TINYP+EK   SPRF+GEHALRRY NGEERCIACKLCEAICPAQAI 
Sbjct: 1   MALTLKYFFKPKVTINYPYEKSPISPRFKGEHALRRYENGEERCIACKLCEAICPAQAIV 60

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139
           IE+  R  DG+RRT RYDIDM KCIYCGLCQEACPVDAIVEGPNFEFA+ T   L YDKE
Sbjct: 61  IEADER-EDGSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGPNFEFASLTHTALIYDKE 119

Query: 140 RLLNNGDRWESEIVRNIVTDSPYR 163
           RLL NGDRWE  +   +  D  YR
Sbjct: 120 RLLQNGDRWEQALASKLHKDYEYR 143


>gi|167585980|ref|ZP_02378368.1| NADH dehydrogenase subunit I [Burkholderia ubonensis Bu]
          Length = 162

 Score =  155 bits (391), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 90/163 (55%), Positives = 108/163 (66%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   +      FL E +    L  RY F+ K T+ +P EK   SPRFRG HALRRY NGE
Sbjct: 1   MTAIQHFFKTFFLTELLKGLALTGRYAFRRKFTVQFPEEKTPISPRFRGLHALRRYENGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIES  R  + TRRT RYDID+ KCI+CG C+E+CPVD+IVE
Sbjct: 61  ERCIACKLCEAVCPAMAITIESETRADN-TRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               E+  E R +LY+ KE LL  GDR+E +I      D+PYR
Sbjct: 120 TQILEYHGEKRGDLYFTKEMLLAVGDRYEKDIAAAKAADAPYR 162


>gi|167836057|ref|ZP_02462940.1| NADH dehydrogenase subunit I [Burkholderia thailandensis MSMB43]
          Length = 162

 Score =  155 bits (391), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 91/163 (55%), Positives = 107/163 (65%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   +      FL E +    L  RY FK K T+ +P EK   SPRFRG HALRRY NGE
Sbjct: 1   MTAIQHFFKTFFLTELLKGLALTGRYTFKRKFTVQFPEEKTPISPRFRGLHALRRYENGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIES  R  D TRRT RYDID+ KCI+CG C+E+CPVD+IVE
Sbjct: 61  ERCIACKLCEAVCPAMAITIESQTR-EDNTRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               E+  E R +LY+ K+ LL  GDR+E EI      D+ YR
Sbjct: 120 TQILEYHGEKRGDLYFTKDMLLAVGDRYEKEIAAAKAADARYR 162


>gi|330817784|ref|YP_004361489.1| NADH dehydrogenase subunit I [Burkholderia gladioli BSR3]
 gi|327370177|gb|AEA61533.1| NADH dehydrogenase subunit I [Burkholderia gladioli BSR3]
          Length = 162

 Score =  154 bits (390), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 91/163 (55%), Positives = 108/163 (66%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   +      FL E V    +  RY FK K T+ +P EK   SPRFRG HALRRY NGE
Sbjct: 1   MTAIQQFFKTFFLTELVKGLAMTGRYTFKRKITVQFPEEKTPISPRFRGLHALRRYENGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIES  R  + TRRT RYDID+ KCI+CG C+E+CPVD+IVE
Sbjct: 61  ERCIACKLCEAVCPAMAITIESQVRADN-TRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               E+  E R +LY+ KE LL  GDR+E +I      D+PYR
Sbjct: 120 TQILEYHGEKRGDLYFTKEMLLAVGDRYEKDIAAAKAADAPYR 162


>gi|134296425|ref|YP_001120160.1| NADH dehydrogenase subunit I [Burkholderia vietnamiensis G4]
 gi|166918790|sp|A4JGC2|NUOI_BURVG RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|134139582|gb|ABO55325.1| NADH dehydrogenase subunit I [Burkholderia vietnamiensis G4]
          Length = 162

 Score =  154 bits (390), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 90/163 (55%), Positives = 108/163 (66%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   +      FL E +    L  RY F+ K T+ +P EK   SPRFRG HALRRY NGE
Sbjct: 1   MTAIQHFFKTFFLTELLKGLALTGRYTFRRKFTVQFPEEKTPISPRFRGLHALRRYENGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIES  R  + TRRT RYDID+ KCI+CG C+E+CPVD+IVE
Sbjct: 61  ERCIACKLCEAVCPAMAITIESETRADN-TRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               E+  E R +LY+ KE LL  GDR+E +I      D+PYR
Sbjct: 120 TQILEYHGEKRGDLYFTKEMLLAVGDRYEKDIAAAKAADAPYR 162


>gi|115352330|ref|YP_774169.1| NADH dehydrogenase subunit I [Burkholderia ambifaria AMMD]
 gi|161524212|ref|YP_001579224.1| NADH dehydrogenase subunit I [Burkholderia multivorans ATCC 17616]
 gi|170698117|ref|ZP_02889197.1| NADH-quinone oxidoreductase, chain I [Burkholderia ambifaria
           IOP40-10]
 gi|171316311|ref|ZP_02905532.1| NADH-quinone oxidoreductase, chain I [Burkholderia ambifaria MEX-5]
 gi|172061201|ref|YP_001808853.1| NADH dehydrogenase subunit I [Burkholderia ambifaria MC40-6]
 gi|189351031|ref|YP_001946659.1| NADH dehydrogenase subunit I [Burkholderia multivorans ATCC 17616]
 gi|221199664|ref|ZP_03572708.1| NADH dehydrogenase I, I subunit [Burkholderia multivorans CGD2M]
 gi|221205436|ref|ZP_03578451.1| NADH dehydrogenase I, I subunit [Burkholderia multivorans CGD2]
 gi|221211743|ref|ZP_03584722.1| NADH dehydrogenase I, I subunit [Burkholderia multivorans CGD1]
 gi|122322649|sp|Q0BDD8|NUOI_BURCM RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|226737384|sp|B1YTP9|NUOI_BURA4 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|226737387|sp|A9AFZ5|NUOI_BURM1 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|115282318|gb|ABI87835.1| NADH dehydrogenase subunit I [Burkholderia ambifaria AMMD]
 gi|160341641|gb|ABX14727.1| NADH-quinone oxidoreductase, chain I [Burkholderia multivorans ATCC
           17616]
 gi|170136975|gb|EDT05223.1| NADH-quinone oxidoreductase, chain I [Burkholderia ambifaria
           IOP40-10]
 gi|171098537|gb|EDT43338.1| NADH-quinone oxidoreductase, chain I [Burkholderia ambifaria MEX-5]
 gi|171993718|gb|ACB64637.1| NADH-quinone oxidoreductase, chain I [Burkholderia ambifaria
           MC40-6]
 gi|189335053|dbj|BAG44123.1| NADH dehydrogenase I chain I [Burkholderia multivorans ATCC 17616]
 gi|221169104|gb|EEE01572.1| NADH dehydrogenase I, I subunit [Burkholderia multivorans CGD1]
 gi|221174274|gb|EEE06706.1| NADH dehydrogenase I, I subunit [Burkholderia multivorans CGD2]
 gi|221180949|gb|EEE13352.1| NADH dehydrogenase I, I subunit [Burkholderia multivorans CGD2M]
          Length = 162

 Score =  154 bits (390), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 90/163 (55%), Positives = 108/163 (66%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   +      FL E +    L  RY F+ K T+ +P EK   SPRFRG HALRRY NGE
Sbjct: 1   MTAIQHFFKTFFLTELLKGLALTGRYTFRRKFTVQFPEEKTPISPRFRGLHALRRYENGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIES  R  + TRRT RYDID+ KCI+CG C+E+CPVD+IVE
Sbjct: 61  ERCIACKLCEAVCPALAITIESETRADN-TRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               E+  E R +LY+ KE LL  GDR+E +I      D+PYR
Sbjct: 120 TQILEYHGEKRGDLYFTKEMLLAVGDRYEKDIAAAKAADAPYR 162


>gi|325524298|gb|EGD02410.1| NADH dehydrogenase subunit I [Burkholderia sp. TJI49]
          Length = 162

 Score =  154 bits (390), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 91/163 (55%), Positives = 108/163 (66%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   +      FL E +    L  RY FK K T+ +P EK   SPRFRG HALRRY NGE
Sbjct: 1   MTAIQHFFKTFFLTELLKGLALTGRYTFKRKFTVQFPEEKTPISPRFRGLHALRRYENGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIES  R  + TRRT RYDID+ KCI+CG C+E+CPVD+IVE
Sbjct: 61  ERCIACKLCEAVCPAMAITIESETRADN-TRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               E+  E R +LY+ KE LL  GDR+E +I      D+PYR
Sbjct: 120 TQILEYHGEKRGDLYFTKEMLLAVGDRYEKDIAAAKAADAPYR 162


>gi|107023180|ref|YP_621507.1| NADH dehydrogenase subunit I [Burkholderia cenocepacia AU 1054]
 gi|116690262|ref|YP_835885.1| NADH dehydrogenase subunit I [Burkholderia cenocepacia HI2424]
 gi|170733601|ref|YP_001765548.1| NADH dehydrogenase subunit I [Burkholderia cenocepacia MC0-3]
 gi|254247665|ref|ZP_04940986.1| NADH-quinone oxidoreductase, chain I [Burkholderia cenocepacia
           PC184]
 gi|254251869|ref|ZP_04945187.1| Formate hydrogenlyase subunit 6/NADH [Burkholderia dolosa AUO158]
 gi|115502519|sp|Q1BV21|NUOI_BURCA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|156633513|sp|A0K915|NUOI_BURCH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|226737385|sp|B1JVN3|NUOI_BURCC RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|105893369|gb|ABF76534.1| NADH dehydrogenase subunit I [Burkholderia cenocepacia AU 1054]
 gi|116648351|gb|ABK08992.1| NADH dehydrogenase subunit I [Burkholderia cenocepacia HI2424]
 gi|124872441|gb|EAY64157.1| NADH-quinone oxidoreductase, chain I [Burkholderia cenocepacia
           PC184]
 gi|124894478|gb|EAY68358.1| Formate hydrogenlyase subunit 6/NADH [Burkholderia dolosa AUO158]
 gi|169816843|gb|ACA91426.1| NADH-quinone oxidoreductase, chain I [Burkholderia cenocepacia
           MC0-3]
          Length = 162

 Score =  154 bits (390), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 91/163 (55%), Positives = 108/163 (66%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   +      FL E +    L  RY FK K T+ +P EK   SPRFRG HALRRY NGE
Sbjct: 1   MTAIQHFFKTFFLTELLKGLALTGRYTFKRKFTVQFPEEKTPISPRFRGLHALRRYENGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIES  R  + TRRT RYDID+ KCI+CG C+E+CPVD+IVE
Sbjct: 61  ERCIACKLCEAVCPALAITIESETRADN-TRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               E+  E R +LY+ KE LL  GDR+E +I      D+PYR
Sbjct: 120 TQILEYHGEKRGDLYFTKEMLLAVGDRYEKDIAAAKAADAPYR 162


>gi|206560695|ref|YP_002231460.1| NADH dehydrogenase subunit I [Burkholderia cenocepacia J2315]
 gi|226737386|sp|B4E5L4|NUOI_BURCJ RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|198036737|emb|CAR52637.1| putative NADH dehydrogenase I chain I [Burkholderia cenocepacia
           J2315]
          Length = 162

 Score =  154 bits (389), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 90/163 (55%), Positives = 108/163 (66%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   +      FL E +    L  RY FK K T+ +P EK   SPRFRG HALRRY NGE
Sbjct: 1   MTAIQHFFKTFFLTELLKGLALTGRYTFKRKFTVQFPEEKTPISPRFRGLHALRRYENGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIES  R  + TRRT RYDID+ KCI+CG C+E+CPVD+IVE
Sbjct: 61  ERCIACKLCEAVCPALAITIESETRADN-TRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               E+  E R +LY+ K+ LL  GDR+E +I      D+PYR
Sbjct: 120 TQILEYHGEKRGDLYFTKDMLLAVGDRYEKDIAAAKAADAPYR 162


>gi|238028135|ref|YP_002912366.1| NADH dehydrogenase subunit I [Burkholderia glumae BGR1]
 gi|237877329|gb|ACR29662.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
           kD subunit (chain I) [Burkholderia glumae BGR1]
          Length = 162

 Score =  154 bits (389), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 91/163 (55%), Positives = 108/163 (66%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   +      FL E +    L  RY FK K T+ +P EK   SPRFRG HALRRY NGE
Sbjct: 1   MTAIQHFFKTFFLTELLKGLALTGRYTFKRKFTVQFPEEKTPISPRFRGLHALRRYENGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIES  R  + TRRT RYDID+ KCI+CG C+E+CPVD+IVE
Sbjct: 61  ERCIACKLCEAVCPAMAITIESQTRADN-TRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               E+  E R +LY+ KE LL  GDR+E +I      D+PYR
Sbjct: 120 TQILEYHGEKRGDLYFTKEMLLAVGDRYEKDIAAAKAADAPYR 162


>gi|302501279|ref|XP_003012632.1| hypothetical protein ARB_01245 [Arthroderma benhamiae CBS 112371]
 gi|302665888|ref|XP_003024550.1| hypothetical protein TRV_01262 [Trichophyton verrucosum HKI 0517]
 gi|291176191|gb|EFE31992.1| hypothetical protein ARB_01245 [Arthroderma benhamiae CBS 112371]
 gi|291188609|gb|EFE43939.1| hypothetical protein TRV_01262 [Trichophyton verrucosum HKI 0517]
 gi|326473101|gb|EGD97110.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Trichophyton
           tonsurans CBS 112818]
 gi|326477944|gb|EGE01954.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Trichophyton equinum
           CBS 127.97]
          Length = 216

 Score =  153 bits (387), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 99/160 (61%), Positives = 112/160 (70%), Gaps = 12/160 (7%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
                 +  + E                 TI YPFEKG  SPRFRGEHALRRYP+GEERC
Sbjct: 69  LDSATKYFLMAELFRGI-----------YTIFYPFEKGPISPRFRGEHALRRYPSGEERC 117

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAITIE+  R   G+RRT RYDIDM KCIYCG CQE+CPVDAIVE PN
Sbjct: 118 IACKLCEAICPAQAITIEAEERVD-GSRRTTRYDIDMTKCIYCGFCQESCPVDAIVESPN 176

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            E+ATETR+EL Y+KE+LL NGD+WE E+      D+PYR
Sbjct: 177 AEYATETREELLYNKEKLLANGDKWEPELAAAARADAPYR 216


>gi|88608014|ref|YP_506692.1| NADH dehydrogenase subunit I [Neorickettsia sennetsu str. Miyayama]
 gi|115502534|sp|Q2GCV4|NUOI_NEOSM RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|88600183|gb|ABD45651.1| NADH dehydrogenase I, I subunit [Neorickettsia sennetsu str.
           Miyayama]
          Length = 160

 Score =  153 bits (387), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 99/156 (63%), Positives = 116/156 (74%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
               +S + L  F   F   L YFF  K TI YP EKG  S RFRGEHALRRY NGEERC
Sbjct: 1   MFKFLSQMQLTRFFVGFRTVLWYFFAPKVTIKYPQEKGPISLRFRGEHALRRYKNGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCE +CPAQAITIE+ PR  DG+RR  +YDIDM KCIYCG CQEACPVDAIVEGPN
Sbjct: 61  IACKLCEVVCPAQAITIEAAPRESDGSRRATKYDIDMTKCIYCGFCQEACPVDAIVEGPN 120

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
           FEFA E R++L YDK++LL+NG +WES +++ +  +
Sbjct: 121 FEFARENREDLLYDKKKLLDNGSKWESALIKMLNRN 156


>gi|77166015|ref|YP_344540.1| NADH dehydrogenase subunit I [Nitrosococcus oceani ATCC 19707]
 gi|254436315|ref|ZP_05049821.1| NADH-quinone oxidoreductase, chain I subfamily [Nitrosococcus
           oceani AFC27]
 gi|115502512|sp|Q3J836|NUOI2_NITOC RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName:
           Full=NADH dehydrogenase I subunit I 2; AltName:
           Full=NDH-1 subunit I 2
 gi|76884329|gb|ABA59010.1| NADH dehydrogenase subunit I [Nitrosococcus oceani ATCC 19707]
 gi|207088005|gb|EDZ65278.1| NADH-quinone oxidoreductase, chain I subfamily [Nitrosococcus
           oceani AFC27]
          Length = 162

 Score =  153 bits (386), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 89/163 (54%), Positives = 109/163 (66%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   R  +    L E +    L  RY F  K T+ +P E+   SPRFRG HALRRYPNGE
Sbjct: 1   MNTLRSYIKSFLLWELLLGLKLTGRYLFTKKVTVQFPEERTPQSPRFRGLHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITI+S  R  DGTRRT RYDID+ KCIYCG C+E+CPVD+IVE
Sbjct: 61  ERCIACKLCEAVCPALAITIDSEQR-EDGTRRTTRYDIDLFKCIYCGFCEESCPVDSIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               ++  E R E    KE+LL  GD++E++I  +   D+PYR
Sbjct: 120 TRILDYHFEERGEHILHKEQLLALGDKYEAQIAADRAADAPYR 162


>gi|332528759|ref|ZP_08404736.1| NADH dehydrogenase subunit I [Hylemonella gracilis ATCC 19624]
 gi|332041825|gb|EGI78174.1| NADH dehydrogenase subunit I [Hylemonella gracilis ATCC 19624]
          Length = 180

 Score =  153 bits (386), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 90/159 (56%), Positives = 103/159 (64%), Gaps = 1/159 (0%)

Query: 5   RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64
           +       L E +    L  RY F  K T+ YP EK   SPRFRG HA RRY NGEERCI
Sbjct: 23  KDFFKSFMLVELLKGMALTGRYTFARKVTLQYPEEKTPLSPRFRGLHAQRRYENGEERCI 82

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           ACKLCEA+CPA AITIES  R   GTRRT RYDID+ KCI+CG C+EACPVDAIVE    
Sbjct: 83  ACKLCEAVCPAMAITIESDARAD-GTRRTTRYDIDLTKCIFCGFCEEACPVDAIVETHIL 141

Query: 125 EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           E+  E R +LY+ K+ LL  GDR+E EI      D+ YR
Sbjct: 142 EYHGEKRGDLYFTKDMLLAVGDRYEKEIAAAKAADAKYR 180


>gi|300113273|ref|YP_003759848.1| NADH-quinone oxidoreductase subunit I [Nitrosococcus watsonii
           C-113]
 gi|299539210|gb|ADJ27527.1| NADH-quinone oxidoreductase, chain I [Nitrosococcus watsonii C-113]
          Length = 162

 Score =  153 bits (386), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 89/163 (54%), Positives = 108/163 (66%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   R  V    L E +    L  RY F  K T+ +P E+   SPRFRG HALRRYPNGE
Sbjct: 1   MNTLRSYVKSFLLWELLLGLKLTGRYLFTKKVTVQFPEERTPQSPRFRGLHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITI+S  R   GTRRT RYDID+ KCIYCG C+E+CPVD+IVE
Sbjct: 61  ERCIACKLCEAVCPALAITIDSEQRDD-GTRRTTRYDIDLFKCIYCGFCEESCPVDSIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               ++  E R E    KE+LL  GD++E++I  +   D+PYR
Sbjct: 120 TRILDYHFEERGEHILHKEQLLALGDKYEAQIAADRAADAPYR 162


>gi|254995042|ref|ZP_05277232.1| NADH dehydrogenase subunit I [Anaplasma marginale str. Mississippi]
          Length = 156

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 102/146 (69%), Positives = 113/146 (77%), Gaps = 1/146 (0%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  F L L   F+ K T+ YP EKG  S RFRGEHALRRY +GEERCIACKLCEAICPAQ
Sbjct: 11  VKGFMLTLVSMFRPKVTLRYPSEKGPLSTRFRGEHALRRYDDGEERCIACKLCEAICPAQ 70

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
           AITIE+  R   G+RRTVRYDIDM KCIYCG CQEACPVDAIVEGPNFE+ATETR+EL Y
Sbjct: 71  AITIEAAERGD-GSRRTVRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEYATETREELMY 129

Query: 137 DKERLLNNGDRWESEIVRNIVTDSPY 162
           +KE+LL NGD WE  +   I  + PY
Sbjct: 130 NKEKLLCNGDVWEEALDFRIRKNRPY 155


>gi|226487090|emb|CAX75410.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8 [Schistosoma
           japonicum]
          Length = 137

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 102/138 (73%), Positives = 113/138 (81%), Gaps = 1/138 (0%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
             FK   T+NYPFEK   SPRFRGEHALRRYP+GEERCIACKLCEAICPAQAITIE+ PR
Sbjct: 1   MMFKEPATLNYPFEKSPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEPR 60

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNG 145
              G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE++T+T +EL Y+KE+LL NG
Sbjct: 61  AG-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEYSTQTHEELLYNKEKLLQNG 119

Query: 146 DRWESEIVRNIVTDSPYR 163
           DRWE EI  N+  D  YR
Sbjct: 120 DRWEVEISENLKADYVYR 137


>gi|255003195|ref|ZP_05278159.1| NADH dehydrogenase subunit I [Anaplasma marginale str. Puerto Rico]
 gi|255004324|ref|ZP_05279125.1| NADH dehydrogenase subunit I [Anaplasma marginale str. Virginia]
          Length = 156

 Score =  152 bits (385), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 102/146 (69%), Positives = 113/146 (77%), Gaps = 1/146 (0%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  F L L   F+ K T+ YP EKG  S RFRGEHALRRY +GEERCIACKLCEAICPAQ
Sbjct: 11  VKGFMLTLVSMFRPKVTLRYPSEKGPLSTRFRGEHALRRYDDGEERCIACKLCEAICPAQ 70

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
           AITIE+  R   G+RRTVRYDIDM KCIYCG CQEACPVDAIVEGPNFE+ATETR+EL Y
Sbjct: 71  AITIEAAERGD-GSRRTVRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEYATETREELMY 129

Query: 137 DKERLLNNGDRWESEIVRNIVTDSPY 162
           +KE+LL NGD WE  +   I  + PY
Sbjct: 130 NKEKLLCNGDVWEEALDFRIRKNRPY 155


>gi|56416854|ref|YP_153928.1| NADH dehydrogenase subunit I [Anaplasma marginale str. St. Maries]
 gi|222475219|ref|YP_002563635.1| NADH dehydrogenase I chain I (nuoI) [Anaplasma marginale str.
           Florida]
 gi|81359048|sp|Q5PAK7|NUOI_ANAMM RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|56388086|gb|AAV86673.1| NADH dehydrogenase [Anaplasma marginale str. St. Maries]
 gi|222419356|gb|ACM49379.1| NADH dehydrogenase I chain I (nuoI) [Anaplasma marginale str.
           Florida]
          Length = 160

 Score =  152 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 102/146 (69%), Positives = 113/146 (77%), Gaps = 1/146 (0%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  F L L   F+ K T+ YP EKG  S RFRGEHALRRY +GEERCIACKLCEAICPAQ
Sbjct: 15  VKGFMLTLVSMFRPKVTLRYPSEKGPLSTRFRGEHALRRYDDGEERCIACKLCEAICPAQ 74

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
           AITIE+  R   G+RRTVRYDIDM KCIYCG CQEACPVDAIVEGPNFE+ATETR+EL Y
Sbjct: 75  AITIEAAERGD-GSRRTVRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEYATETREELMY 133

Query: 137 DKERLLNNGDRWESEIVRNIVTDSPY 162
           +KE+LL NGD WE  +   I  + PY
Sbjct: 134 NKEKLLCNGDVWEEALDFRIRKNRPY 159


>gi|288942126|ref|YP_003444366.1| NADH-quinone oxidoreductase, chain I [Allochromatium vinosum DSM
           180]
 gi|288897498|gb|ADC63334.1| NADH-quinone oxidoreductase, chain I [Allochromatium vinosum DSM
           180]
          Length = 163

 Score =  152 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 93/163 (57%), Positives = 113/163 (69%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           ++  R  +  L L E      +  RYFFK K T+ YP EK   SPRFRG HALRRYPNGE
Sbjct: 2   LKAARDYLHSLTLSELFKGLSVTGRYFFKRKFTVQYPEEKAPISPRFRGLHALRRYPNGE 61

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITIE  PR  DG+RRT RY+ID+ KCIYCG C+E+CPVD+IVE
Sbjct: 62  ERCIACKLCEAVCPALAITIECEPR-EDGSRRTTRYEIDLFKCIYCGFCEESCPVDSIVE 120

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
              +E+  ETR E    K++LL  GD++E+EI      D+PYR
Sbjct: 121 TGIYEYHFETRGEHILTKDKLLEIGDKYEAEIAAARAADAPYR 163


>gi|118602283|ref|YP_903498.1| NADH dehydrogenase subunit I [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|156633539|sp|A1AVS0|NUOI_RUTMC RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|118567222|gb|ABL02027.1| NADH dehydrogenase subunit I [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 163

 Score =  152 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 83/162 (51%), Positives = 103/162 (63%), Gaps = 1/162 (0%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
           +     V    L E      +  +     K T+ +P E+   SPRFRG HALRRYPNGEE
Sbjct: 3   KKLSKLVKDFTLSELRTGMKITAKELVNKKITVQFPEERTPISPRFRGLHALRRYPNGEE 62

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLCEA+CPA AITIES  R   GTRRT+ YDID+ KCI+CG C+EACPVDAIVE 
Sbjct: 63  RCIACKLCEAVCPANAITIESEMRDD-GTRRTIVYDIDLFKCIFCGFCEEACPVDAIVET 121

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
             F++A ++RQ     KERLL  G + E  I +  + D+ Y+
Sbjct: 122 QIFDYAFKSRQGSIMTKERLLEVGSQNEQAINQARLEDAKYK 163


>gi|118359716|ref|XP_001013096.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           precursor, putative [Tetrahymena thermophila]
 gi|89294863|gb|EAR92851.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial
           precursor, putative [Tetrahymena thermophila SB210]
          Length = 324

 Score =  152 bits (383), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 95/156 (60%), Positives = 116/156 (74%), Gaps = 2/156 (1%)

Query: 3   IFRCNVSFLFLKEFVGAFFL-CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
           ++  +   +   E+   F+   + Y F+ + TINYPFEKG  SP FRGEHALRRYP GEE
Sbjct: 163 VWESSYQNIICPEYFYHFWFCGIVYSFEPEWTINYPFEKGPLSPLFRGEHALRRYPTGEE 222

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLC++ CPA+AITIE+ PR   G+RRTVRYDIDM KCIYCG CQEACPVDAIVEG
Sbjct: 223 RCIACKLCQSACPARAITIETEPRPD-GSRRTVRYDIDMTKCIYCGFCQEACPVDAIVEG 281

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIV 157
           PN+E      ++L+YDK +LL NGD+WE +I RNI 
Sbjct: 282 PNYEQTAYLHEDLFYDKYKLLENGDKWEPQIARNIE 317


>gi|56752941|gb|AAW24682.1| SJCHGC09319 protein [Schistosoma japonicum]
          Length = 137

 Score =  151 bits (382), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 102/138 (73%), Positives = 113/138 (81%), Gaps = 1/138 (0%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
             FK   T+NYPFEK   SPRFRGEHALRRYP+GEERCIACKLCEAICPAQAITIE+ PR
Sbjct: 1   MIFKEPATLNYPFEKSPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEPR 60

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNG 145
              G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE++T+T +EL Y+KE+LL NG
Sbjct: 61  AD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEYSTQTHEELLYNKEKLLQNG 119

Query: 146 DRWESEIVRNIVTDSPYR 163
           DRWE EI  N+  D  YR
Sbjct: 120 DRWEVEISENLKADYVYR 137


>gi|121609754|ref|YP_997561.1| NADH dehydrogenase subunit I [Verminephrobacter eiseniae EF01-2]
 gi|156633541|sp|A1WLN6|NUOI_VEREI RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|121554394|gb|ABM58543.1| NADH-quinone oxidoreductase, chain I [Verminephrobacter eiseniae
           EF01-2]
          Length = 169

 Score =  151 bits (382), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 87/152 (57%), Positives = 105/152 (69%), Gaps = 1/152 (0%)

Query: 12  FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71
            L E      L  R+ F+ K T+ +P EK   SPRFRG HALRRY NGEERCIACKLCEA
Sbjct: 19  MLVELFKGMALTGRHAFRRKVTVQFPEEKTPLSPRFRGLHALRRYDNGEERCIACKLCEA 78

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           +CPA AITIES  R   G+RRT RYDID+ KCI+CG C+E+CPVD+IVE   FE+  E R
Sbjct: 79  VCPALAITIESELRAD-GSRRTTRYDIDLTKCIFCGFCEESCPVDSIVETHIFEYHGEKR 137

Query: 132 QELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            +LY+ K+ LL  GDR+E+EI      D+ YR
Sbjct: 138 GDLYFTKDMLLAVGDRYEAEIAAARAADAKYR 169


>gi|88607532|ref|YP_505378.1| NADH dehydrogenase subunit I [Anaplasma phagocytophilum HZ]
 gi|115502516|sp|Q2GJS3|NUOI_ANAPZ RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|88598595|gb|ABD44065.1| NADH dehydrogenase I, I subunit [Anaplasma phagocytophilum HZ]
          Length = 164

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 102/146 (69%), Positives = 113/146 (77%), Gaps = 1/146 (0%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  FFL L   FK K T+ YP EKG  S RFRGEHALRRY +GEERCIACKLCEAICPAQ
Sbjct: 19  VHGFFLTLLAMFKPKVTLRYPHEKGPLSTRFRGEHALRRYESGEERCIACKLCEAICPAQ 78

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
           AITIE+  R   G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE++TETR+EL Y
Sbjct: 79  AITIEAEERSD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEYSTETREELMY 137

Query: 137 DKERLLNNGDRWESEIVRNIVTDSPY 162
           +KE+LL NGD WE  +   I  + PY
Sbjct: 138 NKEKLLANGDIWEEALRYRIKKNQPY 163


>gi|292493660|ref|YP_003529099.1| NADH-quinone oxidoreductase, chain I [Nitrosococcus halophilus Nc4]
 gi|291582255|gb|ADE16712.1| NADH-quinone oxidoreductase, chain I [Nitrosococcus halophilus Nc4]
          Length = 162

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 89/163 (54%), Positives = 107/163 (65%), Gaps = 1/163 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   R       L E +    L  RY F  K T+ +P E+   SPRFRG HALRRYPNGE
Sbjct: 1   MNTLRSYFKSFLLWELLLGLKLTGRYLFAKKVTVQFPEERTPQSPRFRGLHALRRYPNGE 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIACKLCEA+CPA AITI+S  R  DGTRRT  YDID+ KCIYCG C+E+CPVD+IVE
Sbjct: 61  ERCIACKLCEAVCPALAITIDSEQR-EDGTRRTTLYDIDLFKCIYCGFCEESCPVDSIVE 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               +F  E R E    KE+LL  GD++E++I  +   D+PYR
Sbjct: 120 TRILDFHFEERGEHILHKEQLLALGDKYEAQIAADRAADAPYR 162


>gi|68171162|ref|ZP_00544570.1| NADH-quinone oxidoreductase, chain I [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|88657739|ref|YP_507496.1| NADH dehydrogenase subunit I [Ehrlichia chaffeensis str. Arkansas]
 gi|115502529|sp|Q2GGD7|NUOI_EHRCR RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|67999432|gb|EAM86073.1| NADH-quinone oxidoreductase, chain I [Ehrlichia chaffeensis str.
           Sapulpa]
 gi|88599196|gb|ABD44665.1| NADH dehydrogenase I, I subunit [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 169

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 101/145 (69%), Positives = 114/145 (78%), Gaps = 1/145 (0%)

Query: 18  GAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA 77
              ++ LRY FK K T+NYP EKG  S RFRGEHALR+Y NGEERCIACKLCEAICPAQA
Sbjct: 25  RGMYITLRYMFKPKVTLNYPLEKGPLSTRFRGEHALRKYKNGEERCIACKLCEAICPAQA 84

Query: 78  ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
           ITIE+  R   G+RRTVRYDIDM KCIYCG CQEACPVDAIVEGPNFE+ATETR+EL Y+
Sbjct: 85  ITIEAQERDD-GSRRTVRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEYATETREELMYN 143

Query: 138 KERLLNNGDRWESEIVRNIVTDSPY 162
           K +LL+NG  WE  I   I  +S +
Sbjct: 144 KSKLLHNGQIWEEAIDLRIKKNSQF 168


>gi|91776405|ref|YP_546161.1| NADH dehydrogenase subunit I [Methylobacillus flagellatus KT]
 gi|123078791|sp|Q1GZL7|NUOI_METFK RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|91710392|gb|ABE50320.1| NADH dehydrogenase subunit I [Methylobacillus flagellatus KT]
          Length = 163

 Score =  151 bits (381), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 88/160 (55%), Positives = 107/160 (66%), Gaps = 1/160 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
            +   +   L E V    L  RYFF  K T+ +P E+   SPRFRG HALRRYPNGEERC
Sbjct: 5   IKELFASFMLLELVKGMALTGRYFFARKVTVQFPEERTPISPRFRGLHALRRYPNGEERC 64

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEA+CPA AITIES  R  D TRRT RYDID+ KCI+CG C+E+CPVD+IVE   
Sbjct: 65  IACKLCEAVCPAMAITIESEQR-EDNTRRTTRYDIDLTKCIFCGFCEESCPVDSIVETRI 123

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           F++  E R +L Y K  LL  GD++E +I  +   D+ YR
Sbjct: 124 FDYHGEKRGDLIYTKPMLLAVGDKYEEQIAADRAADARYR 163


>gi|306817876|ref|ZP_07451615.1| NADH-quinone oxidoreductase subunit I [Mobiluncus mulieris ATCC
           35239]
 gi|304649355|gb|EFM46641.1| NADH-quinone oxidoreductase subunit I [Mobiluncus mulieris ATCC
           35239]
          Length = 291

 Score =  151 bits (381), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 53/148 (35%), Positives = 80/148 (54%), Gaps = 7/148 (4%)

Query: 2   RIFRCNVSFLFLKEF--VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59
           +++         ++   V  F +  R FF+   T  +PFEK  T PR+ G H L RYP+G
Sbjct: 41  KLWEPTKKGFIAEQLKAVAGFGVTFRNFFRPYVTEQWPFEKVPTQPRYHGRHQLNRYPDG 100

Query: 60  EERCIACKLCEAICPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            E+CI C+LC   CPA AI +E        +   G R    Y I+ ++CI+CG+C EACP
Sbjct: 101 LEKCIGCELCAWACPADAIYVEAASNTPEAQHSPGERYGRVYQINYLRCIFCGMCTEACP 160

Query: 115 VDAIVEGPNFEFATETRQELYYDKERLL 142
             A+    ++E   + R++L Y+K+ LL
Sbjct: 161 TRALTMSNDYEIWDDNREDLIYEKDELL 188


>gi|269958730|ref|YP_003328517.1| NADH dehydrogenase subunit I [Anaplasma centrale str. Israel]
 gi|269848559|gb|ACZ49203.1| NADH dehydrogenase subunit I [Anaplasma centrale str. Israel]
          Length = 160

 Score =  151 bits (380), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 103/146 (70%), Positives = 113/146 (77%), Gaps = 1/146 (0%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  F L L   FK K T+ YPFEKG  S RFRGEHALRRY +GEERCIACKLCEAICPAQ
Sbjct: 15  VRGFLLTLVSMFKPKVTLRYPFEKGPLSTRFRGEHALRRYDDGEERCIACKLCEAICPAQ 74

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
           AITIE+  R   G+RRTVRYDIDM KCIYCG CQEACPVDAIVEGPNFE+ATETR+EL Y
Sbjct: 75  AITIEAEERDD-GSRRTVRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEYATETREELMY 133

Query: 137 DKERLLNNGDRWESEIVRNIVTDSPY 162
           +KE+LL NGD WE  +   I  +  Y
Sbjct: 134 NKEKLLCNGDVWEEALDFRIRKNKLY 159


>gi|227874592|ref|ZP_03992755.1| NADH dehydrogenase subunit I [Mobiluncus mulieris ATCC 35243]
 gi|227844801|gb|EEJ54947.1| NADH dehydrogenase subunit I [Mobiluncus mulieris ATCC 35243]
          Length = 291

 Score =  150 bits (379), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 53/148 (35%), Positives = 80/148 (54%), Gaps = 7/148 (4%)

Query: 2   RIFRCNVSFLFLKEF--VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59
           +++         ++   V  F +  R FF+   T  +PFEK  T PR+ G H L RYP+G
Sbjct: 41  KLWEPTKKGFIGEQLKAVAGFGVTFRNFFRPYVTEQWPFEKVPTQPRYHGRHQLNRYPDG 100

Query: 60  EERCIACKLCEAICPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            E+CI C+LC   CPA AI +E        +   G R    Y I+ ++CI+CG+C EACP
Sbjct: 101 LEKCIGCELCAWACPADAIYVEAASNTPEAQHSPGERYGRVYQINYLRCIFCGMCTEACP 160

Query: 115 VDAIVEGPNFEFATETRQELYYDKERLL 142
             A+    ++E   + R++L Y+K+ LL
Sbjct: 161 TRALTMSNDYEIWDDNREDLIYEKDELL 188


>gi|307701294|ref|ZP_07638315.1| NADH-quinone oxidoreductase, chain I [Mobiluncus mulieris FB024-16]
 gi|307613455|gb|EFN92703.1| NADH-quinone oxidoreductase, chain I [Mobiluncus mulieris FB024-16]
          Length = 291

 Score =  150 bits (379), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 53/148 (35%), Positives = 80/148 (54%), Gaps = 7/148 (4%)

Query: 2   RIFRCNVSFLFLKEF--VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59
           +++         ++   V  F +  R FF+   T  +PFEK  T PR+ G H L RYP+G
Sbjct: 41  KLWEPTKKGFIGEQLKAVAGFGVTFRNFFRPYVTEQWPFEKVPTQPRYHGRHQLNRYPDG 100

Query: 60  EERCIACKLCEAICPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            E+CI C+LC   CPA AI +E        +   G R    Y I+ ++CI+CG+C EACP
Sbjct: 101 LEKCIGCELCAWACPADAIYVEAASNTPEAQHSPGERYGRVYQINYLRCIFCGMCTEACP 160

Query: 115 VDAIVEGPNFEFATETRQELYYDKERLL 142
             A+    ++E   + R++L Y+K+ LL
Sbjct: 161 TRALTMSNDYEIWDDNREDLIYEKDELL 188


>gi|148244397|ref|YP_001219091.1| NADH dehydrogenase subunit I [Candidatus Vesicomyosocius okutanii
           HA]
 gi|156633542|sp|A5CXG5|NUOI_VESOH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|146326224|dbj|BAF61367.1| NADH dehydrogenase I chain I [Candidatus Vesicomyosocius okutanii
           HA]
          Length = 163

 Score =  150 bits (379), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 82/162 (50%), Positives = 101/162 (62%), Gaps = 1/162 (0%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
           +     +    L E      +  +     K T+ +P E+   SPRFRG HALRRYPNGEE
Sbjct: 3   KKLNKLIKNFTLNELRTGLKVTAKELVNKKITVQFPEERTPISPRFRGLHALRRYPNGEE 62

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLCEA+CPA AITIES  R   GTRRT +YDID+ KCI+CG C+EACPVDAIVE 
Sbjct: 63  RCIACKLCEAVCPANAITIESKMRDD-GTRRTTQYDIDLFKCIFCGFCEEACPVDAIVET 121

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
             F++  E+RQ     KERLL  G + E  I +    D+ Y+
Sbjct: 122 QIFDYVFESRQGSIMTKERLLEVGSQNEQVINQTKFEDAKYK 163


>gi|269977608|ref|ZP_06184575.1| NADH-quinone oxidoreductase subunits h/i [Mobiluncus mulieris 28-1]
 gi|269934211|gb|EEZ90778.1| NADH-quinone oxidoreductase subunits h/i [Mobiluncus mulieris 28-1]
          Length = 291

 Score =  150 bits (379), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 53/148 (35%), Positives = 80/148 (54%), Gaps = 7/148 (4%)

Query: 2   RIFRCNVSFLFLKEF--VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59
           +++         ++   V  F +  R FF+   T  +PFEK  T PR+ G H L RYP+G
Sbjct: 41  KLWEPTKKGFIGEQLKAVAGFGVTFRNFFRPYVTEQWPFEKVPTQPRYHGRHQLNRYPDG 100

Query: 60  EERCIACKLCEAICPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            E+CI C+LC   CPA AI +E        +   G R    Y I+ ++CI+CG+C EACP
Sbjct: 101 LEKCIGCELCAWACPADAIYVEAASNTPEAQHSPGERYGRVYQINYLRCIFCGMCTEACP 160

Query: 115 VDAIVEGPNFEFATETRQELYYDKERLL 142
             A+    ++E   + R++L Y+K+ LL
Sbjct: 161 TRALTMSNDYEIWDDNREDLIYEKDELL 188


>gi|300120025|emb|CBK19579.2| subunit NuoI (NDUFS8) [Blastocystis hominis]
          Length = 204

 Score =  150 bits (378), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 91/162 (56%), Positives = 113/162 (69%), Gaps = 1/162 (0%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
           ++   +  +LFL +     ++ +    + K TIN+P EK + SPR RGEH LRRY +GEE
Sbjct: 44  KMLERSCQYLFLTDLFRGLWVSVISMCREKLTINFPHEKVTISPRMRGEHCLRRYASGEE 103

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIAC+LCEAICPAQ I IE+  R   G RRT RYDID+ +CI+CG CQEACPVDAIVE 
Sbjct: 104 RCIACRLCEAICPAQVINIEAEMRPD-GLRRTTRYDIDLSRCIFCGYCQEACPVDAIVEN 162

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           P  EFA E+R+EL YDK +LL+NGD WE  +  NI TD  YR
Sbjct: 163 PLLEFAKESREELMYDKAKLLHNGDMWEPILATNIATDIMYR 204


>gi|54024629|ref|YP_118871.1| NADH dehydrogenase subunit H [Nocardia farcinica IFM 10152]
 gi|81680061|sp|Q5YWD4|NUOHI_NOCFA RecName: Full=NADH-quinone oxidoreductase subunits H/I; AltName:
           Full=NADH dehydrogenase I subunits H/I; AltName:
           Full=NDH-1 subunit H/I
 gi|54016137|dbj|BAD57507.1| putative NADH dehydrogenase I chain H [Nocardia farcinica IFM
           10152]
          Length = 597

 Score =  149 bits (376), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 54/136 (39%), Positives = 74/136 (54%), Gaps = 5/136 (3%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           L E +  F +     FK   T  YP +K  T+PR+ G H L R+P+G E+CI C+LC   
Sbjct: 415 LLEPLAGFAVTAATMFKKPNTEFYPEQKVPTAPRYHGRHQLNRHPDGLEKCIGCELCAWA 474

Query: 73  CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           CPA AI +E        R   G R    Y I+ ++CI CGLC EACP  A+    ++E  
Sbjct: 475 CPADAIYVEGADNTEDERYSPGERYGRVYQINYLRCIGCGLCIEACPTRALTMTNDYELT 534

Query: 128 TETRQELYYDKERLLN 143
            + R +L Y+K+RLL 
Sbjct: 535 DDNRADLIYEKDRLLA 550


>gi|73666986|ref|YP_303002.1| NADH dehydrogenase subunit I [Ehrlichia canis str. Jake]
 gi|115502528|sp|Q3YSA1|NUOI_EHRCJ RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|72394127|gb|AAZ68404.1| NADH dehydrogenase subunit I [Ehrlichia canis str. Jake]
          Length = 167

 Score =  147 bits (370), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 101/145 (69%), Positives = 114/145 (78%), Gaps = 1/145 (0%)

Query: 18  GAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA 77
              ++ LRY FK K T+NYP EKG  S RFRGEHALR+Y NGEERCIACKLCEAICPAQA
Sbjct: 23  KGMYITLRYMFKPKVTLNYPLEKGPLSTRFRGEHALRKYKNGEERCIACKLCEAICPAQA 82

Query: 78  ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
           ITIE+  R   G+RRTVRYDIDM KCIYCG CQEACPVDAIVEGPNFE+ATETR+EL Y+
Sbjct: 83  ITIEAQERDD-GSRRTVRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEYATETREELMYN 141

Query: 138 KERLLNNGDRWESEIVRNIVTDSPY 162
           K +LL+NG  WE  I   I  +S +
Sbjct: 142 KSKLLHNGQVWEEAIDFRIKKNSQF 166


>gi|269955285|ref|YP_003325074.1| NADH-quinone oxidoreductase subunit I [Xylanimonas cellulosilytica
           DSM 15894]
 gi|269303966|gb|ACZ29516.1| NADH-quinone oxidoreductase, chain I [Xylanimonas cellulosilytica
           DSM 15894]
          Length = 300

 Score =  146 bits (368), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 53/138 (38%), Positives = 70/138 (50%), Gaps = 11/138 (7%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  F + L   F+   T  YPFEK  T  R+ G H L RY +G E+CI C+LC   CPA 
Sbjct: 21  VAGFGVTLGSMFRPTVTEQYPFEKVPTPRRYHGRHQLNRYADGLEKCIGCELCAWACPAD 80

Query: 77  AITIESGPRCH-----------DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           AI +E                  G R    Y I+ ++CI+CGLC EACP  A+    ++E
Sbjct: 81  AIYVEGADNADVLAETGGGQVSPGERYGRVYQINYLRCIFCGLCVEACPTRALTMSNDYE 140

Query: 126 FATETRQELYYDKERLLN 143
            A  TR  + Y+K+ LL 
Sbjct: 141 LAGPTRAGMIYEKQDLLA 158


>gi|120609958|ref|YP_969636.1| NADH dehydrogenase subunit I [Acidovorax citrulli AAC00-1]
 gi|326316107|ref|YP_004233779.1| NADH-quinone oxidoreductase subunit I [Acidovorax avenae subsp.
           avenae ATCC 19860]
 gi|156632696|sp|A1TLM4|NUOI_ACIAC RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|120588422|gb|ABM31862.1| NADH dehydrogenase subunit I [Acidovorax citrulli AAC00-1]
 gi|323372943|gb|ADX45212.1| NADH-quinone oxidoreductase, chain I [Acidovorax avenae subsp.
           avenae ATCC 19860]
          Length = 171

 Score =  145 bits (366), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 88/152 (57%), Positives = 105/152 (69%), Gaps = 1/152 (0%)

Query: 12  FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71
            L E V    L  RY F+ K T+ +P EK   SPRFRG HALRRY NGEERCIACKLCEA
Sbjct: 21  MLVELVKGMALTGRYAFRRKVTVQFPEEKTPLSPRFRGLHALRRYENGEERCIACKLCEA 80

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           +CPA AITIES  R   G+RRT RYDID+ KCI+CG C+E+CPVD+IVE    E+  E R
Sbjct: 81  VCPALAITIESDVRAD-GSRRTTRYDIDLTKCIFCGFCEESCPVDSIVETQILEYHGEKR 139

Query: 132 QELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            +LY+ K+ LL  GDR+E+EI      D+ YR
Sbjct: 140 GDLYFTKDMLLAVGDRYEAEIAAAKAADAKYR 171


>gi|269469176|gb|EEZ80718.1| NADH dehydrogenase I chain I [uncultured SUP05 cluster bacterium]
          Length = 173

 Score =  144 bits (364), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 84/170 (49%), Positives = 104/170 (61%), Gaps = 11/170 (6%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
            +  V    L E  G   +  +     K T+ +P E+   SPRFRG HALRRYPNGEERC
Sbjct: 5   IKKLVKDFSLSELRGGMKITAKELINKKITVQFPEERTPISPRFRGLHALRRYPNGEERC 64

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEA+CPA AITIES  R   GTRRT +YDID+ KCI+CG C+EACPVDAIVE   
Sbjct: 65  IACKLCEAVCPANAITIESEMRDD-GTRRTTQYDIDLFKCIFCGFCEEACPVDAIVETQI 123

Query: 124 FEFATE-TRQEL---------YYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           F++A   +R               KE+LL+ G++ E  I +  + DS YR
Sbjct: 124 FDYAFVGSRDGNDNLQGQFGSVITKEQLLDVGNKNEKTINQTKLEDSKYR 173


>gi|145541694|ref|XP_001456535.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124424347|emb|CAK89138.1| unnamed protein product [Paramecium tetraurelia]
          Length = 236

 Score =  144 bits (364), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 95/156 (60%), Positives = 117/156 (75%), Gaps = 2/156 (1%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLR-YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
           ++          E++  F+ C   Y F+ + TINYP+EKG  SP FRGEHALRRYP GEE
Sbjct: 75  VWETAYQNFTQPEYLYHFWFCGVLYCFEPEWTINYPYEKGPLSPLFRGEHALRRYPTGEE 134

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLC++ CPA+AITIE+ PR  + +RRTVRYDIDM KCIYCG CQEACPVDAIVEG
Sbjct: 135 RCIACKLCQSACPARAITIETEPRPDN-SRRTVRYDIDMTKCIYCGFCQEACPVDAIVEG 193

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIV 157
           PN+E+ T   ++L+YDK +LL NGD+WE +I RNI 
Sbjct: 194 PNYEYTTYQHEDLFYDKFKLLENGDKWEPQIARNIE 229


>gi|145508706|ref|XP_001440297.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|145535448|ref|XP_001453457.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124407514|emb|CAK72900.1| unnamed protein product [Paramecium tetraurelia]
 gi|124421179|emb|CAK86060.1| unnamed protein product [Paramecium tetraurelia]
          Length = 236

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 95/156 (60%), Positives = 117/156 (75%), Gaps = 2/156 (1%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLR-YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
           ++          E++  F+ C   Y F+ + TINYP+EKG  SP FRGEHALRRYP GEE
Sbjct: 75  VWETAYQNFTQPEYLYHFWFCGVLYCFEPEWTINYPYEKGPLSPLFRGEHALRRYPTGEE 134

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLC++ CPA+AITIE+ PR  + +RRTVRYDIDM KCIYCG CQEACPVDAIVEG
Sbjct: 135 RCIACKLCQSACPARAITIETEPRPDN-SRRTVRYDIDMTKCIYCGFCQEACPVDAIVEG 193

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIV 157
           PN+E+ T   ++L+YDK +LL NGD+WE +I RNI 
Sbjct: 194 PNYEYTTYQHEDLFYDKFKLLENGDKWEPQIARNIE 229


>gi|145536107|ref|XP_001453781.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124421514|emb|CAK86384.1| unnamed protein product [Paramecium tetraurelia]
          Length = 236

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 95/156 (60%), Positives = 117/156 (75%), Gaps = 2/156 (1%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLR-YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
           ++          E++  F+ C   Y F+ + TINYP+EKG  SP FRGEHALRRYP GEE
Sbjct: 75  VWETAYQNFTQPEYLYHFWFCGVLYCFEPEWTINYPYEKGPLSPLFRGEHALRRYPTGEE 134

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCIACKLC++ CPA+AITIE+ PR  + +RRTVRYDIDM KCIYCG CQEACPVDAIVEG
Sbjct: 135 RCIACKLCQSACPARAITIETEPRPDN-SRRTVRYDIDMTKCIYCGFCQEACPVDAIVEG 193

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIV 157
           PN+E+ T   ++L+YDK +LL NGD+WE +I RNI 
Sbjct: 194 PNYEYTTYQHEDLFYDKFKLLENGDKWEPQIARNIE 229


>gi|302543436|ref|ZP_07295778.1| NADH-quinone oxidoreductase, I subunit [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302461054|gb|EFL24147.1| NADH-quinone oxidoreductase, I subunit [Streptomyces himastatinicus
           ATCC 53653]
          Length = 221

 Score =  143 bits (361), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 57/136 (41%), Positives = 73/136 (53%), Gaps = 5/136 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  F +  +  FK + T  YP EK  T+PRF G H L R+P+G E+CI C+LC   CPA 
Sbjct: 22  VAGFGVTFKAMFKKRLTEQYPEEKKPTAPRFHGRHQLNRHPDGLEKCIGCELCAWACPAD 81

Query: 77  AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E        R   G R    Y I+ ++CI CGLC EACP  A+     +E A  TR
Sbjct: 82  AIYVEGADNTEEERYSPGERYGRVYQINYLRCILCGLCVEACPTRALTMTNEYELADRTR 141

Query: 132 QELYYDKERLLNNGDR 147
           + L Y KE LL   + 
Sbjct: 142 ESLIYTKEELLAGLED 157


>gi|332669457|ref|YP_004452465.1| NADH-quinone oxidoreductase subunit I [Cellulomonas fimi ATCC 484]
 gi|332338495|gb|AEE45078.1| NADH-quinone oxidoreductase, chain I [Cellulomonas fimi ATCC 484]
          Length = 283

 Score =  143 bits (360), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 52/132 (39%), Positives = 69/132 (52%), Gaps = 5/132 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           VG F + L   F+   T  YP EK    PR+ G H L RY +G E+CI C+LC   CPA 
Sbjct: 72  VGGFGVTLSNMFRPTVTEQYPSEKVPAKPRYHGRHQLNRYADGLEKCIGCELCAWACPAD 131

Query: 77  AITIESGPRCH-----DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E            G R    Y I+ ++CI+CGLC EACP  A+     +E A  TR
Sbjct: 132 AIYVEGADNTPDAQFSPGERYGRVYQINYLRCIFCGLCIEACPTRALTMTNEYELAGPTR 191

Query: 132 QELYYDKERLLN 143
             + ++K+ LL 
Sbjct: 192 AGMIWEKQDLLA 203


>gi|124515808|gb|EAY57317.1| NADH dehydrogenase, chain I [Leptospirillum rubarum]
          Length = 186

 Score =  142 bits (359), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 59/158 (37%), Positives = 84/158 (53%), Gaps = 1/158 (0%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
              +  +  +   E +    L   + FK K T+ YP EK   +  +RG    RRY NG+E
Sbjct: 1   MTLKSLLKSVLFTEIMQGLKLTFTHMFKKKITVQYPHEKLELADGYRGFIVHRRYENGQE 60

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVR-YDIDMIKCIYCGLCQEACPVDAIVE 120
           RC+ C LCEAICPA+AI +          RR  + Y +D  +CI+CG C  ACPV+A+  
Sbjct: 61  RCVGCDLCEAICPAKAIRVVGDIHPEFPERRFAKEYTLDFTRCIFCGFCVVACPVNALSM 120

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158
              F  ++ TR+ L Y K++LL  GDR ESE +  +  
Sbjct: 121 TKEFAHSSFTREGLIYSKDQLLALGDRCESESIAYLKV 158


>gi|269794081|ref|YP_003313536.1| NADH dehydrogenase subunit I [Sanguibacter keddieii DSM 10542]
 gi|269096266|gb|ACZ20702.1| NADH dehydrogenase subunit I [Sanguibacter keddieii DSM 10542]
          Length = 252

 Score =  142 bits (358), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 54/135 (40%), Positives = 70/135 (51%), Gaps = 8/135 (5%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  F +     F+   T  YPFEK  T PR+ G H L RY +G E+CI C+LC   CPA 
Sbjct: 39  VAGFGVTFSSMFRPTVTEQYPFEKVPTKPRYHGRHQLNRYADGLEKCIGCELCAWACPAD 98

Query: 77  AITIE--------SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
           AI +E         G     G R    Y I+ ++CI+CGLC EACP  A+     +E   
Sbjct: 99  AIYVEGSSNAELPDGGHRSPGERYGSVYQINYLRCIFCGLCIEACPTRALTMTNEYELTG 158

Query: 129 ETRQELYYDKERLLN 143
            TR+ L ++KE LL 
Sbjct: 159 PTREGLIWEKEDLLA 173


>gi|289207901|ref|YP_003459967.1| NADH-quinone oxidoreductase, chain I [Thioalkalivibrio sp. K90mix]
 gi|288943532|gb|ADC71231.1| NADH-quinone oxidoreductase, chain I [Thioalkalivibrio sp. K90mix]
          Length = 162

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 86/138 (62%), Positives = 98/138 (71%), Gaps = 1/138 (0%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
           Y    K T+ YP EK   SPRFRG HALRRYPNGEERCIACKLCEA+CPA AITI+S  R
Sbjct: 26  YLLSRKFTVQYPDEKTPMSPRFRGLHALRRYPNGEERCIACKLCEAVCPALAITIDSEER 85

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNG 145
              GTRRT RYDID+ KCI+CG C+EACPVD+IVE   FE+  E R E    K++LL  G
Sbjct: 86  AD-GTRRTTRYDIDLFKCIFCGFCEEACPVDSIVETHIFEYHFENRGEQIMTKDKLLAIG 144

Query: 146 DRWESEIVRNIVTDSPYR 163
           DR+E EI      D+PYR
Sbjct: 145 DRFEKEIAEARAIDAPYR 162


>gi|206602052|gb|EDZ38534.1| NADH dehydrogenase, chain I [Leptospirillum sp. Group II '5-way
           CG']
          Length = 186

 Score =  142 bits (357), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 59/158 (37%), Positives = 84/158 (53%), Gaps = 1/158 (0%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
              +  +  +   E +    L   + FK K T+ YP EK   +  +RG    RRY NG+E
Sbjct: 1   MTLKSLLKSVLFTEIMQGLKLTFTHMFKKKITVQYPHEKLELADGYRGFIVHRRYENGQE 60

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVR-YDIDMIKCIYCGLCQEACPVDAIVE 120
           RC+ C LCEAICPA+AI +          RR  + Y +D  +CI+CG C  ACPV+A+  
Sbjct: 61  RCVGCDLCEAICPAKAIRVVGDIHPEIPERRYAKEYTLDFTRCIFCGFCVVACPVNALSM 120

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158
              F  ++ TR+ L Y K++LL  GDR ESE +  +  
Sbjct: 121 TKEFAHSSFTREGLIYSKDQLLTLGDRCESESIAYLKV 158


>gi|298346126|ref|YP_003718813.1| NADH dehydrogenase subunit I [Mobiluncus curtisii ATCC 43063]
 gi|298236187|gb|ADI67319.1| NADH dehydrogenase subunit I [Mobiluncus curtisii ATCC 43063]
          Length = 245

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 53/131 (40%), Positives = 78/131 (59%), Gaps = 5/131 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  F +  R FF+   T  YPFEK  T PR+ G H L RYP+G E+C+ C+LC   CPA 
Sbjct: 54  VAGFGVTFRNFFRPYVTEQYPFEKVPTQPRYHGRHQLNRYPDGLEKCVGCELCAWACPAD 113

Query: 77  AITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E+     +     G R    Y+I+ ++CI+CG+C EACP  A+    ++E   + R
Sbjct: 114 AIYVEAAANTPEAQYSAGERYGRVYEINYLRCIFCGMCIEACPTRALTMSNDYEIWDDNR 173

Query: 132 QELYYDKERLL 142
           ++L ++K+RLL
Sbjct: 174 EDLIFEKDRLL 184


>gi|52842979|ref|YP_096778.1| NADH dehydrogenase subunit I [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|54295610|ref|YP_128025.1| NADH dehydrogenase subunit I [Legionella pneumophila str. Lens]
 gi|81376647|sp|Q5ZRU6|NUOI_LEGPH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|81679125|sp|Q5WT28|NUOI_LEGPL RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|52630090|gb|AAU28831.1| NADH dehydrogenase I, I subunit [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|53755442|emb|CAH16938.1| NADH-quinone oxidoreductase chain I [Legionella pneumophila str.
           Lens]
          Length = 166

 Score =  141 bits (356), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 80/141 (56%), Positives = 97/141 (68%), Gaps = 1/141 (0%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            ++YFF+ K T+ +P E+   SPRFRG  ALRRYPNGEERCIACKLCEA+CPA AITIES
Sbjct: 27  TVKYFFRKKITVQFPEEQTPLSPRFRGLLALRRYPNGEERCIACKLCEAVCPALAITIES 86

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLL 142
             R   G+RRT RYDIDM KCI CGLC+E+CPVD+IV  P   +    R +    KE+LL
Sbjct: 87  EQRDD-GSRRTTRYDIDMFKCINCGLCEESCPVDSIVVTPIHHYHISERGQNIMTKEKLL 145

Query: 143 NNGDRWESEIVRNIVTDSPYR 163
             GD  ES++  +   D  YR
Sbjct: 146 AVGDLMESQLAADRAADEKYR 166


>gi|304390114|ref|ZP_07372068.1| NADH-quinone oxidoreductase subunit I [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
 gi|304326596|gb|EFL93840.1| NADH-quinone oxidoreductase subunit I [Mobiluncus curtisii subsp.
           curtisii ATCC 35241]
          Length = 245

 Score =  141 bits (355), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 53/131 (40%), Positives = 78/131 (59%), Gaps = 5/131 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  F +  R FF+   T  YPFEK  T PR+ G H L RYP+G E+C+ C+LC   CPA 
Sbjct: 54  VAGFGVTFRNFFRPYVTEQYPFEKVPTQPRYHGRHQLNRYPDGLEKCVGCELCAWACPAD 113

Query: 77  AITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E+     +     G R    Y+I+ ++CI+CG+C EACP  A+    ++E   + R
Sbjct: 114 AIYVEAAANTPEAQYSAGERYGRVYEINYLRCIFCGMCIEACPTRALTMSNDYEIWDDNR 173

Query: 132 QELYYDKERLL 142
           ++L ++K+RLL
Sbjct: 174 EDLIFEKDRLL 184


>gi|315657371|ref|ZP_07910253.1| NADH-quinone oxidoreductase subunit I [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
 gi|315491843|gb|EFU81452.1| NADH-quinone oxidoreductase subunit I [Mobiluncus curtisii subsp.
           holmesii ATCC 35242]
          Length = 245

 Score =  141 bits (355), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 53/131 (40%), Positives = 78/131 (59%), Gaps = 5/131 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  F +  R FF+   T  YPFEK  T PR+ G H L RYP+G E+C+ C+LC   CPA 
Sbjct: 54  VAGFGVTFRNFFRPYVTEQYPFEKVPTQPRYHGRHQLNRYPDGLEKCVGCELCAWACPAD 113

Query: 77  AITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E+     +     G R    Y+I+ ++CI+CG+C EACP  A+    ++E   + R
Sbjct: 114 AIYVEAAANTPEAQYSAGERYGRVYEINYLRCIFCGMCIEACPTRALTMSNDYEIWDDNR 173

Query: 132 QELYYDKERLL 142
           ++L ++K+RLL
Sbjct: 174 EDLIFEKDRLL 184


>gi|297159516|gb|ADI09228.1| NADH dehydrogenase subunit I [Streptomyces bingchenggensis BCW-1]
          Length = 203

 Score =  141 bits (355), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 57/136 (41%), Positives = 73/136 (53%), Gaps = 5/136 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  F +  +  FK + T  YP EK  T+PRF G H L R+P+G E+CI C+LC   CPA 
Sbjct: 8   VAGFGVTFKAMFKKRLTEQYPEEKKPTAPRFHGRHQLNRHPDGLEKCIGCELCAWACPAD 67

Query: 77  AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E        R   G R    Y I+ ++CI CGLC EACP  A+     +E A  TR
Sbjct: 68  AIYVEGADNTEEERYSPGERYGRVYQINYLRCILCGLCVEACPTRALTMTNEYELADRTR 127

Query: 132 QELYYDKERLLNNGDR 147
           + L Y KE LL   + 
Sbjct: 128 ESLIYTKEELLAGLEE 143


>gi|288917191|ref|ZP_06411560.1| NADH-quinone oxidoreductase, chain I [Frankia sp. EUN1f]
 gi|288351382|gb|EFC85590.1| NADH-quinone oxidoreductase, chain I [Frankia sp. EUN1f]
          Length = 223

 Score =  141 bits (354), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 54/131 (41%), Positives = 72/131 (54%), Gaps = 5/131 (3%)

Query: 18  GAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA 77
             F +     FK  TT  YP  K  T+PRF G H L R+P+G E+C+ C+LC   CPA A
Sbjct: 8   KGFGVTFSTMFKKPTTEQYPEYKKETAPRFHGRHQLNRHPDGLEKCVGCELCAWACPADA 67

Query: 78  ITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           I +E        R   G R    Y I+ ++CI CGLC EACP  A+     +E A ++RQ
Sbjct: 68  IYVEGADNTDEERYSPGERYGRVYQINYLRCILCGLCIEACPTRALTMSNEYELADDSRQ 127

Query: 133 ELYYDKERLLN 143
           +L + KE+LL 
Sbjct: 128 DLIFTKEQLLA 138


>gi|54298764|ref|YP_125133.1| NADH dehydrogenase subunit I [Legionella pneumophila str. Paris]
 gi|148361094|ref|YP_001252301.1| NADH dehydrogenase I subunit I [Legionella pneumophila str. Corby]
 gi|296108424|ref|YP_003620125.1| NADH dehydrogenase I chain I [Legionella pneumophila 2300/99 Alcoy]
 gi|81679378|sp|Q5X1B5|NUOI_LEGPA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|166918793|sp|A5IHV5|NUOI_LEGPC RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|53752549|emb|CAH13981.1| NADH-quinone oxidoreductase chain I [Legionella pneumophila str.
           Paris]
 gi|148282867|gb|ABQ56955.1| NADH dehydrogenase I, I subunit [Legionella pneumophila str. Corby]
 gi|295650326|gb|ADG26173.1| NADH dehydrogenase I chain I [Legionella pneumophila 2300/99 Alcoy]
          Length = 166

 Score =  141 bits (354), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 80/141 (56%), Positives = 98/141 (69%), Gaps = 1/141 (0%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            ++YFF+ K T+ +P E+   SPRFRG  ALRRYPNGEERCIACKLCEA+CPA AITIES
Sbjct: 27  TVKYFFRKKITVQFPEEQTPLSPRFRGLLALRRYPNGEERCIACKLCEAVCPALAITIES 86

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLL 142
             R  DG+RRT RYDIDM KCI CGLC+E+CPVD+IV  P   +    R +    KE+LL
Sbjct: 87  EQR-EDGSRRTTRYDIDMFKCINCGLCEESCPVDSIVVTPIHHYHISERGQNIMTKEKLL 145

Query: 143 NNGDRWESEIVRNIVTDSPYR 163
             GD  E+++  +   D  YR
Sbjct: 146 AVGDLMETQLAADRAADEKYR 166


>gi|218678471|ref|ZP_03526368.1| NADH dehydrogenase subunit I [Rhizobium etli CIAT 894]
          Length = 160

 Score =  141 bits (354), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 107/124 (86%), Positives = 114/124 (91%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
            ++S LFLKEF GAFFL +RYFF+ K TINYPFEKG  SPRFRGEHALRRYPNGEERCIA
Sbjct: 3   SSISSLFLKEFFGAFFLSMRYFFRQKATINYPFEKGPVSPRFRGEHALRRYPNGEERCIA 62

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVEGPNFE
Sbjct: 63  CKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVEGPNFE 122

Query: 126 FATE 129
           FATE
Sbjct: 123 FATE 126


>gi|315654705|ref|ZP_07907611.1| NADH-quinone oxidoreductase subunit I [Mobiluncus curtisii ATCC
           51333]
 gi|315491169|gb|EFU80788.1| NADH-quinone oxidoreductase subunit I [Mobiluncus curtisii ATCC
           51333]
          Length = 245

 Score =  141 bits (354), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 53/131 (40%), Positives = 78/131 (59%), Gaps = 5/131 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  F +  R FF+   T  YPFEK  T PR+ G H L RYP+G E+C+ C+LC   CPA 
Sbjct: 54  VAGFGVTFRNFFRPYVTEQYPFEKVPTQPRYHGRHQLNRYPDGLEKCVGCELCAWACPAD 113

Query: 77  AITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E+     +     G R    Y+I+ ++CI+CG+C EACP  A+    ++E   + R
Sbjct: 114 AIYVEAAANTPEAQYSAGERYGRVYEINYLRCIFCGMCIEACPTRALTMSNDYEIWDDNR 173

Query: 132 QELYYDKERLL 142
           ++L ++K+RLL
Sbjct: 174 EDLIFEKDRLL 184


>gi|307328629|ref|ZP_07607802.1| NADH-quinone oxidoreductase, chain I [Streptomyces violaceusniger
           Tu 4113]
 gi|306885741|gb|EFN16754.1| NADH-quinone oxidoreductase, chain I [Streptomyces violaceusniger
           Tu 4113]
          Length = 207

 Score =  140 bits (353), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 56/136 (41%), Positives = 72/136 (52%), Gaps = 5/136 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  F +  +  FK + T  YP EK  T+PRF G H L R+P+G E+CI C+LC   CPA 
Sbjct: 8   VAGFGVTFKAMFKKRLTEQYPEEKKPTAPRFHGRHQLNRHPDGLEKCIGCELCAWACPAD 67

Query: 77  AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E        R   G R    Y I+ ++CI CGLC EACP  A+     +E A  +R
Sbjct: 68  AIYVEGADNTDEERYSPGERYGRVYQINYLRCILCGLCVEACPTRALTMTNEYELADRSR 127

Query: 132 QELYYDKERLLNNGDR 147
             L Y KE LL   + 
Sbjct: 128 TSLIYTKEELLAGLED 143


>gi|220904925|ref|YP_002480237.1| NADH-quinone oxidoreductase subunit I [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219869224|gb|ACL49559.1| NADH-quinone oxidoreductase, chain I [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 234

 Score =  140 bits (352), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 61/148 (41%), Positives = 80/148 (54%), Gaps = 2/148 (1%)

Query: 5   RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRY-PNGEERC 63
           R  +  L   E      L LR+ F+   T  YP EK   +  FRG HAL R   +G  RC
Sbjct: 9   RNWLQTLLQTEIAQGLALTLRHMFRKPVTQQYPDEKPVVAAGFRGRHALVRDAESGGSRC 68

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC  C  +CP+  I I S  R  DG+R+   Y ID ++CIYCG C E CPV+AIV    
Sbjct: 69  VACMRCARVCPSHCIRIRSH-RSVDGSRKVDAYVIDALRCIYCGYCAEVCPVNAIVLTEI 127

Query: 124 FEFATETRQELYYDKERLLNNGDRWESE 151
           + +A  TRQE  +D+  LL N D + +E
Sbjct: 128 YAYAGRTRQEFVFDEAHLLRNWDEFAAE 155


>gi|289641419|ref|ZP_06473583.1| NADH-quinone oxidoreductase, chain I [Frankia symbiont of Datisca
           glomerata]
 gi|289508755|gb|EFD29690.1| NADH-quinone oxidoreductase, chain I [Frankia symbiont of Datisca
           glomerata]
          Length = 200

 Score =  140 bits (352), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 54/131 (41%), Positives = 73/131 (55%), Gaps = 5/131 (3%)

Query: 18  GAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA 77
             F +     FK  TT  YP EK  T+PRF G H L R+P+G E+C+ C+LC   CPA A
Sbjct: 8   KGFGVTFSTMFKKPTTEQYPEEKKPTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPADA 67

Query: 78  ITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           I +E        R   G R    Y I+ ++CI CGLC EACP  A+    ++E A ++R 
Sbjct: 68  IYVEGADNTDEERYSPGERYGRVYQINYLRCILCGLCIEACPTRALTMTNDYELADDSRS 127

Query: 133 ELYYDKERLLN 143
           +L + KE+LL 
Sbjct: 128 DLIFTKEQLLA 138


>gi|254524848|ref|ZP_05136903.1| NADH-quinone oxidoreductase subunit i [Stenotrophomonas sp. SKA14]
 gi|219722439|gb|EED40964.1| NADH-quinone oxidoreductase subunit i [Stenotrophomonas sp. SKA14]
          Length = 162

 Score =  139 bits (351), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 88/141 (62%), Positives = 100/141 (70%), Gaps = 1/141 (0%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            L+Y FK K T+ YP EK   SPRFRG HALRRYPNGEERCIACKLCEA+CPA AITI+S
Sbjct: 23  TLKYSFKPKYTMMYPMEKFPQSPRFRGLHALRRYPNGEERCIACKLCEAVCPALAITIDS 82

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLL 142
             R  DGTRRT RYDID+ KCI+CG C+E+CPVD+IVE    E+  E R E    K +LL
Sbjct: 83  AKR-EDGTRRTTRYDIDLFKCIFCGFCEESCPVDSIVETHILEYHFENRGENIVTKPQLL 141

Query: 143 NNGDRWESEIVRNIVTDSPYR 163
             GDR ESEI      D+ YR
Sbjct: 142 ALGDRLESEIAERRAADAAYR 162


>gi|256831787|ref|YP_003160514.1| NADH-quinone oxidoreductase, chain I [Jonesia denitrificans DSM
           20603]
 gi|256685318|gb|ACV08211.1| NADH-quinone oxidoreductase, chain I [Jonesia denitrificans DSM
           20603]
          Length = 226

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 57/135 (42%), Positives = 74/135 (54%), Gaps = 8/135 (5%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  F + L  FF    T  YPFEK  T PR+ G H L RYP+G E+CI C+LC   CPA 
Sbjct: 14  VAGFGVTLNSFFSPTVTEQYPFEKVPTKPRYHGRHQLNRYPDGLEKCIGCELCAWACPAD 73

Query: 77  AITIESGPRCH--------DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
           AI +E G             G R    Y I+ ++CI+CGLC EACP  A+    ++E A 
Sbjct: 74  AIYVEGGSNAELPDGAHMSPGERYGKVYQINYLRCIFCGLCIEACPTRALTMTNDYELAG 133

Query: 129 ETRQELYYDKERLLN 143
            TR+ + Y+K+ LL 
Sbjct: 134 PTREGMIYEKQDLLA 148


>gi|71275682|ref|ZP_00651967.1| NADH-quinone oxidoreductase, chain I [Xylella fastidiosa Dixon]
 gi|71897774|ref|ZP_00680000.1| NADH-quinone oxidoreductase, chain I [Xylella fastidiosa Ann-1]
 gi|71897862|ref|ZP_00680088.1| NADH-quinone oxidoreductase, chain I [Xylella fastidiosa Ann-1]
 gi|170729497|ref|YP_001774930.1| NADH dehydrogenase subunit I [Xylella fastidiosa M12]
 gi|182680813|ref|YP_001828973.1| NADH dehydrogenase subunit I [Xylella fastidiosa M23]
 gi|71163573|gb|EAO13290.1| NADH-quinone oxidoreductase, chain I [Xylella fastidiosa Dixon]
 gi|71732329|gb|EAO34383.1| NADH-quinone oxidoreductase, chain I [Xylella fastidiosa Ann-1]
 gi|71732417|gb|EAO34471.1| NADH-quinone oxidoreductase, chain I [Xylella fastidiosa Ann-1]
 gi|167964290|gb|ACA11300.1| NADH dehydrogenase [Xylella fastidiosa M12]
 gi|182630923|gb|ACB91699.1| NADH-quinone oxidoreductase, chain I [Xylella fastidiosa M23]
          Length = 162

 Score =  139 bits (351), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 85/141 (60%), Positives = 101/141 (71%), Gaps = 1/141 (0%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            L+Y F+ K T+ YP EK   SPRFRG HALRRYPNGEERCIACKLCEA+CPA AITI+S
Sbjct: 23  TLKYTFRPKYTVLYPMEKFPQSPRFRGLHALRRYPNGEERCIACKLCEAVCPALAITIDS 82

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLL 142
             R  DGTRRT RYDID+ KCI+CG C+E+CPVD+IVE    E+  E R E    K +LL
Sbjct: 83  AKR-EDGTRRTTRYDIDLFKCIFCGFCEESCPVDSIVETHILEYHFEKRGENIVTKPQLL 141

Query: 143 NNGDRWESEIVRNIVTDSPYR 163
             GDR+E+EI      D+ +R
Sbjct: 142 AIGDRFEAEIAERRAADAAFR 162


>gi|307579280|gb|ADN63249.1| NADH dehydrogenase subunit I [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 158

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 85/141 (60%), Positives = 101/141 (71%), Gaps = 1/141 (0%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            L+Y F+ K T+ YP EK   SPRFRG HALRRYPNGEERCIACKLCEA+CPA AITI+S
Sbjct: 19  TLKYTFRPKYTVLYPMEKFPQSPRFRGLHALRRYPNGEERCIACKLCEAVCPALAITIDS 78

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLL 142
             R  DGTRRT RYDID+ KCI+CG C+E+CPVD+IVE    E+  E R E    K +LL
Sbjct: 79  AKR-EDGTRRTTRYDIDLFKCIFCGFCEESCPVDSIVETHILEYHFEKRGENIVTKPQLL 137

Query: 143 NNGDRWESEIVRNIVTDSPYR 163
             GDR+E+EI      D+ +R
Sbjct: 138 AIGDRFEAEIAERRAADAAFR 158


>gi|86739259|ref|YP_479659.1| NADH dehydrogenase subunit I [Frankia sp. CcI3]
 gi|110287761|sp|Q2JFL2|NUOI_FRASC RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|86566121|gb|ABD09930.1| NADH dehydrogenase subunit I [Frankia sp. CcI3]
          Length = 217

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 55/131 (41%), Positives = 74/131 (56%), Gaps = 5/131 (3%)

Query: 18  GAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA 77
             F +     FK  TT  YP EK  T+PRF G H L R+P+G E+C+ C+LC   CPA A
Sbjct: 8   KGFGVTFGTMFKKPTTEQYPEEKKETAPRFHGRHQLNRHPDGLEKCVGCELCAWACPADA 67

Query: 78  ITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           I +E        R   G R    Y I+ ++CI CGLC EACP  A+    ++E A ++RQ
Sbjct: 68  IYVEGADNTEAERYSPGERYGRVYQINYLRCILCGLCIEACPTRALTMSNDYELADDSRQ 127

Query: 133 ELYYDKERLLN 143
           +L + KE+LL 
Sbjct: 128 DLIFTKEQLLA 138


>gi|239980144|ref|ZP_04702668.1| NADH dehydrogenase subunit I [Streptomyces albus J1074]
          Length = 232

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 53/132 (40%), Positives = 72/132 (54%), Gaps = 5/132 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  F +  +  FK + T  YP +  +T+PRF G H L R+P+G E+C+ C+LC   CPA 
Sbjct: 16  VAGFGVTFKAMFKKRLTEQYPEQPKTTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 75

Query: 77  AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E        R   G R    Y I+  +CI CGLC EACP  A+     FE A  +R
Sbjct: 76  AIYVEGADNTDEERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTNEFELADSSR 135

Query: 132 QELYYDKERLLN 143
           + L Y K++LL 
Sbjct: 136 ENLIYTKDQLLA 147


>gi|269218345|ref|ZP_06162199.1| NADH-quinone oxidoreductase subunit I [Actinomyces sp. oral taxon
           848 str. F0332]
 gi|269212204|gb|EEZ78544.1| NADH-quinone oxidoreductase subunit I [Actinomyces sp. oral taxon
           848 str. F0332]
          Length = 251

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 53/132 (40%), Positives = 72/132 (54%), Gaps = 5/132 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  + + +   F+   T  YP EK  T+PR+ G H L RYP+G ERCI C+LC   CPA 
Sbjct: 30  VAGYGVTISSMFRKPVTEQYPEEKVPTAPRYHGRHQLNRYPDGLERCIGCELCAWACPAD 89

Query: 77  AITIESGPRCH-----DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E+           G R    Y I+ ++CI+CG C +ACP  A+     +E A  TR
Sbjct: 90  AIFVEAASNTPDNQVSPGERYGRVYQINYLRCIFCGFCIQACPTRALTMTNEYELAGPTR 149

Query: 132 QELYYDKERLLN 143
           + L Y+KE LL 
Sbjct: 150 EGLVYEKEDLLA 161


>gi|145596568|ref|YP_001160865.1| NADH dehydrogenase subunit I [Salinispora tropica CNB-440]
 gi|145305905|gb|ABP56487.1| NADH-quinone oxidoreductase, chain I [Salinispora tropica CNB-440]
          Length = 211

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 51/136 (37%), Positives = 73/136 (53%), Gaps = 5/136 (3%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           +      F +   + FK   T +YPF+    +PR+ G H L R+P+G E+CI C+LC   
Sbjct: 4   ITGTFKGFGVTFSHMFKKVVTTDYPFKPPVAAPRYHGRHILNRHPDGLEKCIGCELCAWA 63

Query: 73  CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           CPA AI +E        R   G R    Y I+  +CI+CGLC EACP  ++     +E A
Sbjct: 64  CPADAIYVEGGDNTEEERFSPGERYASVYQINYARCIFCGLCIEACPTRSLTMSNEYELA 123

Query: 128 TETRQELYYDKERLLN 143
            + RQ+L + KE+LL 
Sbjct: 124 RDNRQDLIFTKEQLLA 139


>gi|311741750|ref|ZP_07715561.1| NADH-quinone oxidoreductase subunit I [Aeromicrobium marinum DSM
           15272]
 gi|311314756|gb|EFQ84662.1| NADH-quinone oxidoreductase subunit I [Aeromicrobium marinum DSM
           15272]
          Length = 187

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 57/140 (40%), Positives = 73/140 (52%), Gaps = 9/140 (6%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           + + V  F +  R  FK   T  YPFEK  T+PRF G H L R+P+G E+CI C+LC   
Sbjct: 11  MWDPVAGFGVTFRTMFKKVVTEQYPFEKLPTAPRFHGRHQLNRWPDGLEKCIGCELCAWA 70

Query: 73  CPAQAITIES---------GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           CPA AI +E            R   G R    Y I+ ++CI CGLC EACP  A+     
Sbjct: 71  CPADAIYVEGASNDDSDGGDGRYSPGERYGRVYQINYLRCILCGLCIEACPTRALTMTNE 130

Query: 124 FEFATETRQELYYDKERLLN 143
           +E A + R +L Y K  LL 
Sbjct: 131 YELADDNRADLIYTKSDLLA 150


>gi|190575270|ref|YP_001973115.1| NADH dehydrogenase subunit I [Stenotrophomonas maltophilia K279a]
 gi|190013192|emb|CAQ46825.1| putative NADH-ubiquinone dehydrogenase I chain I [Stenotrophomonas
           maltophilia K279a]
          Length = 163

 Score =  139 bits (350), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 87/141 (61%), Positives = 100/141 (70%), Gaps = 1/141 (0%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            L+Y FK K T+ YP EK   SPRFRG HALRRYPNGEERCIACKLCEA+CPA AITI+S
Sbjct: 24  TLKYSFKPKYTMMYPMEKFPQSPRFRGLHALRRYPNGEERCIACKLCEAVCPALAITIDS 83

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLL 142
             R  DGTRRT RYDID+ KCI+CG C+E+CPVD+IVE    E+  E R E    K +LL
Sbjct: 84  AKR-EDGTRRTTRYDIDLFKCIFCGFCEESCPVDSIVETHILEYHFENRGENIVTKPQLL 142

Query: 143 NNGDRWESEIVRNIVTDSPYR 163
             GDR E+EI      D+ YR
Sbjct: 143 ALGDRLENEIAERRAADAAYR 163


>gi|15836916|ref|NP_297604.1| NADH dehydrogenase subunit I [Xylella fastidiosa 9a5c]
 gi|28198179|ref|NP_778493.1| NADH dehydrogenase subunit I [Xylella fastidiosa Temecula1]
 gi|81839557|sp|Q87EP7|NUOI_XYLFT RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|81858452|sp|Q9PGI7|NUOI_XYLFA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|9105136|gb|AAF83124.1|AE003884_9 NADH-ubiquinone oxidoreductase, NQO9 subunit [Xylella fastidiosa
           9a5c]
 gi|28056249|gb|AAO28142.1| NADH-ubiquinone oxidoreductase NQO9 subunit [Xylella fastidiosa
           Temecula1]
          Length = 163

 Score =  139 bits (349), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 85/141 (60%), Positives = 101/141 (71%), Gaps = 1/141 (0%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            L+Y F+ K T+ YP EK   SPRFRG HALRRYPNGEERCIACKLCEA+CPA AITI+S
Sbjct: 24  TLKYTFRPKYTVLYPMEKFPQSPRFRGLHALRRYPNGEERCIACKLCEAVCPALAITIDS 83

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLL 142
             R  DGTRRT RYDID+ KCI+CG C+E+CPVD+IVE    E+  E R E    K +LL
Sbjct: 84  AKR-EDGTRRTTRYDIDLFKCIFCGFCEESCPVDSIVETHILEYHFEKRGENIVTKPQLL 142

Query: 143 NNGDRWESEIVRNIVTDSPYR 163
             GDR+E+EI      D+ +R
Sbjct: 143 AIGDRFEAEIAERRAADAAFR 163


>gi|159039967|ref|YP_001539220.1| NADH dehydrogenase subunit I [Salinispora arenicola CNS-205]
 gi|157918802|gb|ABW00230.1| NADH-quinone oxidoreductase, chain I [Salinispora arenicola
           CNS-205]
          Length = 211

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 51/132 (38%), Positives = 72/132 (54%), Gaps = 5/132 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
              F +   + FK   T +YPF+    +PR+ G H L R+P+G E+CI C+LC   CPA 
Sbjct: 8   FKGFGVTFSHMFKKVVTTDYPFKPPVAAPRYHGRHILNRHPDGLEKCIGCELCAWACPAD 67

Query: 77  AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E        R   G R    Y I+  +CI+CGLC EACP  ++     +E A + R
Sbjct: 68  AIYVEGGDNTEEQRFSPGERYASVYQINYARCIFCGLCIEACPTRSLTMSNEYELARDNR 127

Query: 132 QELYYDKERLLN 143
           Q+L + KE+LL 
Sbjct: 128 QDLIFTKEQLLA 139


>gi|312200059|ref|YP_004020120.1| NADH-quinone oxidoreductase chain I [Frankia sp. EuI1c]
 gi|311231395|gb|ADP84250.1| NADH-quinone oxidoreductase, chain I [Frankia sp. EuI1c]
          Length = 185

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 54/134 (40%), Positives = 75/134 (55%), Gaps = 5/134 (3%)

Query: 15  EFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP 74
           +F   F L     F+   T +YP +K  T+PRF G H L R+P+G E+C+ C+LC   CP
Sbjct: 5   DFFKGFGLTFGNMFRKPVTESYPEQKKPTAPRFHGRHQLNRHPDGLEKCVGCELCAWACP 64

Query: 75  AQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           A AI +E        R   G R    Y I+ ++CI CGLC EACP  A+  G  +E A +
Sbjct: 65  ADAIYVEGADNTDEERFSPGERYGKVYQINYLRCILCGLCIEACPTRALTMGNEYELADD 124

Query: 130 TRQELYYDKERLLN 143
           +R +L + KE+LL 
Sbjct: 125 SRNDLIFTKEQLLA 138


>gi|148824347|ref|YP_001289101.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis F11]
 gi|253800187|ref|YP_003033188.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis KZN
           1435]
 gi|254365778|ref|ZP_04981823.1| NADH dehydrogenase I (chain I) nuoI (NADH-ubiquinone oxidoreductase
           chain I) [Mycobacterium tuberculosis str. Haarlem]
 gi|289555426|ref|ZP_06444636.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis KZN
           605]
 gi|289746962|ref|ZP_06506340.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
           02_1987]
 gi|298526627|ref|ZP_07014036.1| NADH-quinone oxidoreductase subunit I [Mycobacterium tuberculosis
           94_M4241A]
 gi|134151291|gb|EBA43336.1| NADH dehydrogenase I (chain I) nuoI (NADH-ubiquinone oxidoreductase
           chain I) [Mycobacterium tuberculosis str. Haarlem]
 gi|148722874|gb|ABR07499.1| NADH dehydrogenase I chain I nuoI (NADH-ubiquinone oxidoreductase
           chain I) [Mycobacterium tuberculosis F11]
 gi|253321690|gb|ACT26293.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis KZN
           1435]
 gi|289440058|gb|EFD22551.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis KZN
           605]
 gi|289687490|gb|EFD54978.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
           02_1987]
 gi|298496421|gb|EFI31715.1| NADH-quinone oxidoreductase subunit I [Mycobacterium tuberculosis
           94_M4241A]
 gi|328459924|gb|AEB05347.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis KZN
           4207]
          Length = 218

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 55/136 (40%), Positives = 73/136 (53%), Gaps = 5/136 (3%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           L + V  F + L   FK   T  YP   G  + R+ G H L RYP+G E+CI C+LC   
Sbjct: 38  LLDAVAGFGVTLGSMFKKTVTEEYPERPGPVAARYHGRHQLNRYPDGLEKCIGCELCAWA 97

Query: 73  CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           CPA AI +E        R   G R    Y I+ ++CI CGLC EACP  A+    ++E A
Sbjct: 98  CPADAIYVEGADNTEEERFSPGERYGRVYQINYLRCIGCGLCIEACPTRALTMTYDYELA 157

Query: 128 TETRQELYYDKERLLN 143
            + R +L Y+K+RLL 
Sbjct: 158 DDNRADLIYEKDRLLA 173


>gi|31794329|ref|NP_856822.1| NADH dehydrogenase subunit I [Mycobacterium bovis AF2122/97]
 gi|121639036|ref|YP_979260.1| NADH dehydrogenase subunit I [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|215428609|ref|ZP_03426528.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis T92]
 gi|215432112|ref|ZP_03430031.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis EAS054]
 gi|219559199|ref|ZP_03538275.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis T17]
 gi|224991528|ref|YP_002646217.1| NADH dehydrogenase subunit I [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|260188194|ref|ZP_05765668.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis CPHL_A]
 gi|260202300|ref|ZP_05769791.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis T46]
 gi|260206492|ref|ZP_05773983.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis K85]
 gi|289444718|ref|ZP_06434462.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis T46]
 gi|289448833|ref|ZP_06438577.1| NADH dehydrogenase I chain I nuoI [Mycobacterium tuberculosis
           CPHL_A]
 gi|289571364|ref|ZP_06451591.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
           T17]
 gi|289575865|ref|ZP_06456092.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis K85]
 gi|289751831|ref|ZP_06511209.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
           T92]
 gi|289755272|ref|ZP_06514650.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis EAS054]
 gi|81712063|sp|Q7TX57|NUOI_MYCBO RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|156633526|sp|A1KNE9|NUOI_MYCBP RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|254772595|sp|C1AGS0|NUOI_MYCBT RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|31619925|emb|CAD95269.1| PROBABLE NADH DEHYDROGENASE I (CHAIN I) NUOI (NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN I) [Mycobacterium bovis AF2122/97]
 gi|121494684|emb|CAL73165.1| Probable NADH dehydrogenase I (chain I) nuoI [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|224774643|dbj|BAH27449.1| NADH dehydrogenase subunit I [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|289417637|gb|EFD14877.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis T46]
 gi|289421791|gb|EFD18992.1| NADH dehydrogenase I chain I nuoI [Mycobacterium tuberculosis
           CPHL_A]
 gi|289540296|gb|EFD44874.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis K85]
 gi|289545118|gb|EFD48766.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
           T17]
 gi|289692418|gb|EFD59847.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
           T92]
 gi|289695859|gb|EFD63288.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis EAS054]
          Length = 211

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 55/136 (40%), Positives = 73/136 (53%), Gaps = 5/136 (3%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           L + V  F + L   FK   T  YP   G  + R+ G H L RYP+G E+CI C+LC   
Sbjct: 31  LLDAVAGFGVTLGSMFKKTVTEEYPERPGPVAARYHGRHQLNRYPDGLEKCIGCELCAWA 90

Query: 73  CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           CPA AI +E        R   G R    Y I+ ++CI CGLC EACP  A+    ++E A
Sbjct: 91  CPADAIYVEGADNTEEERFSPGERYGRVYQINYLRCIGCGLCIEACPTRALTMTYDYELA 150

Query: 128 TETRQELYYDKERLLN 143
            + R +L Y+K+RLL 
Sbjct: 151 DDNRADLIYEKDRLLA 166


>gi|15610289|ref|NP_217669.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis H37Rv]
 gi|15842729|ref|NP_337766.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis CDC1551]
 gi|148663008|ref|YP_001284531.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis H37Ra]
 gi|167970177|ref|ZP_02552454.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis H37Ra]
 gi|215405151|ref|ZP_03417332.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis 02_1987]
 gi|215413020|ref|ZP_03421721.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis 94_M4241A]
 gi|215447442|ref|ZP_03434194.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis T85]
 gi|218754932|ref|ZP_03533728.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis GM 1503]
 gi|254233772|ref|ZP_04927097.1| NADH dehydrogenase I (chain I) nuoI (NADH-ubiquinone oxidoreductase
           chain I) [Mycobacterium tuberculosis C]
 gi|254552243|ref|ZP_05142690.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|289759283|ref|ZP_06518661.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis T85]
 gi|289763336|ref|ZP_06522714.1| NADH dehydrogenase I (chain I) nuoI (NADH-ubiquinone oxidoreductase
           chain I) [Mycobacterium tuberculosis GM 1503]
 gi|294995504|ref|ZP_06801195.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis 210]
 gi|297635796|ref|ZP_06953576.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis KZN 4207]
 gi|297732793|ref|ZP_06961911.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis KZN R506]
 gi|313660126|ref|ZP_07817006.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis KZN V2475]
 gi|6647663|sp|P95173|NUOI_MYCTU RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|156633530|sp|A5U7G9|NUOI_MYCTA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|1781215|emb|CAB06286.1| PROBABLE NADH DEHYDROGENASE I (CHAIN I) NUOI (NADH-UBIQUINONE
           OXIDOREDUCTASE CHAIN I) [Mycobacterium tuberculosis
           H37Rv]
 gi|13883051|gb|AAK47580.1| NADH dehydrogenase I, I subunit [Mycobacterium tuberculosis
           CDC1551]
 gi|124599301|gb|EAY58405.1| NADH dehydrogenase I (chain I) nuoI (NADH-ubiquinone oxidoreductase
           chain I) [Mycobacterium tuberculosis C]
 gi|148507160|gb|ABQ74969.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis H37Ra]
 gi|289710842|gb|EFD74858.1| NADH dehydrogenase I (chain I) nuoI (NADH-ubiquinone oxidoreductase
           chain I) [Mycobacterium tuberculosis GM 1503]
 gi|289714847|gb|EFD78859.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis T85]
 gi|326902623|gb|EGE49556.1| hypothetical protein TBPG_00472 [Mycobacterium tuberculosis W-148]
          Length = 211

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 55/136 (40%), Positives = 73/136 (53%), Gaps = 5/136 (3%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           L + V  F + L   FK   T  YP   G  + R+ G H L RYP+G E+CI C+LC   
Sbjct: 31  LLDAVAGFGVTLGSMFKKTVTEEYPERPGPVAARYHGRHQLNRYPDGLEKCIGCELCAWA 90

Query: 73  CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           CPA AI +E        R   G R    Y I+ ++CI CGLC EACP  A+    ++E A
Sbjct: 91  CPADAIYVEGADNTEEERFSPGERYGRVYQINYLRCIGCGLCIEACPTRALTMTYDYELA 150

Query: 128 TETRQELYYDKERLLN 143
            + R +L Y+K+RLL 
Sbjct: 151 DDNRADLIYEKDRLLA 166


>gi|318057835|ref|ZP_07976558.1| NADH dehydrogenase subunit I [Streptomyces sp. SA3_actG]
 gi|318077143|ref|ZP_07984475.1| NADH dehydrogenase subunit I [Streptomyces sp. SA3_actF]
          Length = 253

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 54/132 (40%), Positives = 71/132 (53%), Gaps = 5/132 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  F +  +  FK + T  YP +   T+PRF G H L R+P+G E+C+ C+LC   CPA 
Sbjct: 45  VAGFGVTFKAMFKKRLTEQYPEQPKVTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 104

Query: 77  AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E        R   G R    Y I+  +CI CGLC EACP  A+     FE A  TR
Sbjct: 105 AIYVEGADNTEQERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTSEFELADSTR 164

Query: 132 QELYYDKERLLN 143
           + L Y K++LL 
Sbjct: 165 ENLIYTKDQLLA 176


>gi|297192779|ref|ZP_06910177.1| NADH dehydrogenase subunit I [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297151490|gb|EFH31194.1| NADH dehydrogenase subunit I [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 233

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 55/136 (40%), Positives = 73/136 (53%), Gaps = 5/136 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  F +  +  FK + T  YP ++  T+PRF G H L R+P+G E+C+ C+LC   CPA 
Sbjct: 36  VAGFGVTFKAMFKKRLTEQYPEQQKVTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 95

Query: 77  AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E        R   G R    Y I+  +CI CGLC EACP  A+     FE A  +R
Sbjct: 96  AIYVEGADNTEEERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTNEFELADSSR 155

Query: 132 QELYYDKERLLNNGDR 147
           + L Y KE+LL   D 
Sbjct: 156 ENLIYTKEQLLAGLDE 171


>gi|240169662|ref|ZP_04748321.1| NADH dehydrogenase subunit I [Mycobacterium kansasii ATCC 12478]
          Length = 181

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 56/136 (41%), Positives = 75/136 (55%), Gaps = 5/136 (3%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           L + V  F + L   FK   T  YP + G  +PR+ G H L RYP+G E+CI C+LC   
Sbjct: 4   LLDAVAGFGVTLGSMFKKTVTEEYPEKPGPVAPRYHGRHQLNRYPDGLEKCIGCELCAWA 63

Query: 73  CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           CPA AI +E        R   G R    Y I+ ++CI CGLC EACP  A+    ++E A
Sbjct: 64  CPADAIYVEGADNTEEARYSPGERYGRVYQINYLRCIGCGLCIEACPTRALTMTNDYEMA 123

Query: 128 TETRQELYYDKERLLN 143
            + R +L Y+K+RLL 
Sbjct: 124 DDNRADLIYEKDRLLA 139


>gi|296268281|ref|YP_003650913.1| NADH-quinone oxidoreductase, chain I [Thermobispora bispora DSM
           43833]
 gi|296091068|gb|ADG87020.1| NADH-quinone oxidoreductase, chain I [Thermobispora bispora DSM
           43833]
          Length = 171

 Score =  139 bits (349), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 53/132 (40%), Positives = 72/132 (54%), Gaps = 5/132 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  F +   + FK   T+ YP EK  T+PRF G H L R+P+G E+C+ C+LC   CPA 
Sbjct: 10  VKGFGVTFHHMFKKPVTVQYPEEKRPTAPRFHGRHQLNRWPDGLEKCVGCELCAWACPAD 69

Query: 77  AITIESG-----PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E        R   G R    Y I+ ++CI CGLC EACP  A+     +E A  +R
Sbjct: 70  AIYVEGADNTETERYSPGERYGRVYQINYLRCIMCGLCIEACPTRALTMTNEYELADTSR 129

Query: 132 QELYYDKERLLN 143
           + + Y K+ LL 
Sbjct: 130 EAMIYTKDMLLA 141


>gi|291451999|ref|ZP_06591389.1| NADH-quinone oxidoreductase subunit I 1 [Streptomyces albus J1074]
 gi|291354948|gb|EFE81850.1| NADH-quinone oxidoreductase subunit I 1 [Streptomyces albus J1074]
          Length = 244

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 53/132 (40%), Positives = 72/132 (54%), Gaps = 5/132 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  F +  +  FK + T  YP +  +T+PRF G H L R+P+G E+C+ C+LC   CPA 
Sbjct: 28  VAGFGVTFKAMFKKRLTEQYPEQPKTTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 87

Query: 77  AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E        R   G R    Y I+  +CI CGLC EACP  A+     FE A  +R
Sbjct: 88  AIYVEGADNTDEERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTNEFELADSSR 147

Query: 132 QELYYDKERLLN 143
           + L Y K++LL 
Sbjct: 148 ENLIYTKDQLLA 159


>gi|229821701|ref|YP_002883227.1| NADH-quinone oxidoreductase, chain I [Beutenbergia cavernae DSM
           12333]
 gi|229567614|gb|ACQ81465.1| NADH-quinone oxidoreductase, chain I [Beutenbergia cavernae DSM
           12333]
          Length = 254

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 55/143 (38%), Positives = 73/143 (51%), Gaps = 7/143 (4%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  F +     F+   T  YPFEK  T PR+ G H L RY +G E+CI C+LC   CPA 
Sbjct: 55  VAGFGVTFSSMFRPSMTEQYPFEKKPTQPRYHGRHQLNRYADGLEKCIGCELCAWACPAD 114

Query: 77  AITIESGPRCH-----DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E            G R    Y I+ ++CI+CGLC EACP  A+    +FE A  TR
Sbjct: 115 AIYVEGADNSPDAQFSPGERYGRVYQINYLRCIFCGLCIEACPTRALTMTNDFELAGPTR 174

Query: 132 QELYYDKERLLNNGDRWESEIVR 154
           + L + K+ LL      E ++  
Sbjct: 175 EGLIFTKDELLAPLR--EGQLAA 195


>gi|296130543|ref|YP_003637793.1| NADH-quinone oxidoreductase, chain I [Cellulomonas flavigena DSM
           20109]
 gi|296022358|gb|ADG75594.1| NADH-quinone oxidoreductase, chain I [Cellulomonas flavigena DSM
           20109]
          Length = 247

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 52/132 (39%), Positives = 70/132 (53%), Gaps = 5/132 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  F +     FK   T  YP E+  T PR+ G H L RYP+G E+CI C+LC   CPA 
Sbjct: 34  VAGFGVTFANMFKPTVTEQYPREQVPTKPRYHGRHQLNRYPDGLEKCIGCELCAWACPAD 93

Query: 77  AITIESGPRCH-----DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E+           G R    Y I+ ++CI+CGLC EACP  A+     +E A  TR
Sbjct: 94  AIYVEADDNTPDAQYSPGERYGRVYQINYLRCIFCGLCIEACPTRALTMTNEYELAGPTR 153

Query: 132 QELYYDKERLLN 143
             + ++K+ LL 
Sbjct: 154 PGMIWEKQDLLA 165


>gi|226306206|ref|YP_002766166.1| NADH-quinone oxidoreductase chain I [Rhodococcus erythropolis PR4]
 gi|259514779|sp|C0ZYJ2|NUOI_RHOE4 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|226185323|dbj|BAH33427.1| NADH-quinone oxidoreductase chain I [Rhodococcus erythropolis PR4]
          Length = 195

 Score =  138 bits (348), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 56/139 (40%), Positives = 73/139 (52%), Gaps = 8/139 (5%)

Query: 13  LKEFVG---AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69
           + EF+G    F + L   FK   T  YP EK  T+P + G H L RY +G E+CI C+LC
Sbjct: 1   MPEFLGPIAGFGVTLSTMFKKPETEFYPEEKRPTAPGYHGRHQLNRYADGLEKCIGCELC 60

Query: 70  EAICPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
              CPA AI +E        R   G R    Y I+ ++CI CGLC EACP  A+     +
Sbjct: 61  AWACPADAIYVEGADNTEEERFSPGERYGQVYQINYLRCIGCGLCVEACPTRALTMTNEY 120

Query: 125 EFATETRQELYYDKERLLN 143
           E   + R  L Y+K+RLL 
Sbjct: 121 EMVDDNRAGLIYEKDRLLA 139


>gi|330465210|ref|YP_004402953.1| NADH dehydrogenase subunit I [Verrucosispora maris AB-18-032]
 gi|328808181|gb|AEB42353.1| NADH dehydrogenase subunit I [Verrucosispora maris AB-18-032]
          Length = 213

 Score =  138 bits (347), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 51/136 (37%), Positives = 73/136 (53%), Gaps = 5/136 (3%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           +      F +   + FK   T +YPF   + +PR+ G H L R+P+G E+CI C+LC   
Sbjct: 4   ITGTFKGFGVTFSHMFKKVVTTDYPFTPPTPAPRYHGRHILNRHPDGLEKCIGCELCAWA 63

Query: 73  CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           CPA AI +E        R   G R    Y I+  +CI+CGLC EACP  ++     +E A
Sbjct: 64  CPADAIYVEGGDNTDEQRFSPGERYASVYQINYARCIFCGLCIEACPTRSLTMSNEYELA 123

Query: 128 TETRQELYYDKERLLN 143
            + RQ+L + KE+LL 
Sbjct: 124 RDNRQDLIFTKEQLLA 139


>gi|270158106|ref|ZP_06186763.1| NADH-quinone oxidoreductase I subunit [Legionella longbeachae
           D-4968]
 gi|289163629|ref|YP_003453767.1| NADH-quinone oxidoreductase chain I [Legionella longbeachae NSW150]
 gi|269990131|gb|EEZ96385.1| NADH-quinone oxidoreductase I subunit [Legionella longbeachae
           D-4968]
 gi|288856802|emb|CBJ10613.1| NADH-quinone oxidoreductase chain I [Legionella longbeachae NSW150]
          Length = 166

 Score =  138 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 83/138 (60%), Positives = 96/138 (69%), Gaps = 1/138 (0%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
           YFFK K T+ +P EK   SPRFRG  ALRRYPNGEERCIACKLCEA+CPA AITIE+ PR
Sbjct: 30  YFFKKKITVQFPEEKTPISPRFRGLLALRRYPNGEERCIACKLCEAVCPALAITIEAQPR 89

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNG 145
             DGTRRT RYDIDM KCI CGLC+E+CPVD+IV  P   +    R +    KE+LL  G
Sbjct: 90  -EDGTRRTTRYDIDMFKCINCGLCEESCPVDSIVVTPIHHYHVSERGQNIMTKEKLLALG 148

Query: 146 DRWESEIVRNIVTDSPYR 163
           D  E ++  +   D  YR
Sbjct: 149 DLMEPKLAADRAADEKYR 166


>gi|302536176|ref|ZP_07288518.1| NADH-plastoquinone oxidoreductase, I subunit [Streptomyces sp. C]
 gi|302445071|gb|EFL16887.1| NADH-plastoquinone oxidoreductase, I subunit [Streptomyces sp. C]
          Length = 226

 Score =  138 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 55/132 (41%), Positives = 73/132 (55%), Gaps = 5/132 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  F +  +  FK + T  YP ++ +T+PRF G H L R+P+G E+CI C+LC   CPA 
Sbjct: 28  VAGFGVTFKAMFKKRLTEQYPEQQKTTAPRFHGRHQLNRHPDGLEKCIGCELCAWACPAD 87

Query: 77  AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E        R   G R    Y I+  +CI CGLC EACP  A+     FE A  +R
Sbjct: 88  AIYVEGADNTEEERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTNEFELADASR 147

Query: 132 QELYYDKERLLN 143
           + L Y KE+LL 
Sbjct: 148 ESLIYTKEQLLA 159


>gi|302521202|ref|ZP_07273544.1| NADH-plastoquinone oxidoreductase, I subunit [Streptomyces sp.
           SPB78]
 gi|302430097|gb|EFL01913.1| NADH-plastoquinone oxidoreductase, I subunit [Streptomyces sp.
           SPB78]
          Length = 267

 Score =  138 bits (347), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 54/132 (40%), Positives = 71/132 (53%), Gaps = 5/132 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  F +  +  FK + T  YP +   T+PRF G H L R+P+G E+C+ C+LC   CPA 
Sbjct: 59  VAGFGVTFKAMFKKRLTEQYPEQPKVTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 118

Query: 77  AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E        R   G R    Y I+  +CI CGLC EACP  A+     FE A  TR
Sbjct: 119 AIYVEGADNTEQERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTSEFELADSTR 178

Query: 132 QELYYDKERLLN 143
           + L Y K++LL 
Sbjct: 179 ENLIYTKDQLLA 190


>gi|238062219|ref|ZP_04606928.1| NADH-quinone oxidoreductase, I subunit [Micromonospora sp. ATCC
           39149]
 gi|237884030|gb|EEP72858.1| NADH-quinone oxidoreductase, I subunit [Micromonospora sp. ATCC
           39149]
          Length = 213

 Score =  137 bits (346), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 50/136 (36%), Positives = 74/136 (54%), Gaps = 5/136 (3%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           +      F +   + F+   T +YPF+   ++PR+ G H L R+P+G E+CI C+LC   
Sbjct: 4   ITGTFKGFGVTFSHMFRKVVTTDYPFKPPVSAPRYHGRHILNRHPDGLEKCIGCELCAWA 63

Query: 73  CPAQAITIESGPRCH-----DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           CPA AI +E G          G R    Y I+  +CI+CGLC EACP  ++     +E A
Sbjct: 64  CPADAIYVEGGDNTEENRLSPGERHASVYQINYARCIFCGLCIEACPTRSLTMSNEYELA 123

Query: 128 TETRQELYYDKERLLN 143
            + RQ+L + KE+LL 
Sbjct: 124 RDNRQDLIFTKEQLLA 139


>gi|319950459|ref|ZP_08024373.1| NADH dehydrogenase subunit I [Dietzia cinnamea P4]
 gi|319435882|gb|EFV91088.1| NADH dehydrogenase subunit I [Dietzia cinnamea P4]
          Length = 186

 Score =  137 bits (346), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 54/136 (39%), Positives = 74/136 (54%), Gaps = 5/136 (3%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
             E +  F +     F+ K T  YP EK  T+PR+ G H L RY +G E+CI C+LC   
Sbjct: 7   FLEPLAGFGVTFATMFRKKHTEQYPEEKVPTAPRYHGRHQLNRYADGLEKCIGCELCAWA 66

Query: 73  CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           CPA AI +E     +  R   G R    Y I+ ++CI CGLC EACP  A+    ++E A
Sbjct: 67  CPADAIYVEGADNTAEERFSPGERYGRIYQINYLRCIGCGLCVEACPTRALTMTNDYEMA 126

Query: 128 TETRQELYYDKERLLN 143
            + R +L Y+K+ LL 
Sbjct: 127 DDNRADLIYEKQDLLA 142


>gi|295837117|ref|ZP_06824050.1| NADH-quinone oxidoreductase, I subunit [Streptomyces sp. SPB74]
 gi|295826362|gb|EFG64799.1| NADH-quinone oxidoreductase, I subunit [Streptomyces sp. SPB74]
          Length = 267

 Score =  137 bits (346), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 54/132 (40%), Positives = 71/132 (53%), Gaps = 5/132 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  F +  +  FK + T  YP +   T+PRF G H L R+P+G E+C+ C+LC   CPA 
Sbjct: 59  VAGFGVTFKAMFKKRLTEQYPEQPKVTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 118

Query: 77  AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E        R   G R    Y I+  +CI CGLC EACP  A+     FE A  TR
Sbjct: 119 AIYVEGADNTEQERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTSEFELADSTR 178

Query: 132 QELYYDKERLLN 143
           + L Y K++LL 
Sbjct: 179 ENLIYTKDQLLA 190


>gi|108798542|ref|YP_638739.1| NADH dehydrogenase subunit I [Mycobacterium sp. MCS]
 gi|119867642|ref|YP_937594.1| NADH dehydrogenase subunit I [Mycobacterium sp. KMS]
 gi|123179140|sp|Q1BBQ1|NUOI_MYCSS RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|156633529|sp|A1UD96|NUOI_MYCSK RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|108768961|gb|ABG07683.1| NADH dehydrogenase subunit I [Mycobacterium sp. MCS]
 gi|119693731|gb|ABL90804.1| NADH dehydrogenase subunit I [Mycobacterium sp. KMS]
          Length = 174

 Score =  137 bits (345), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 53/136 (38%), Positives = 74/136 (54%), Gaps = 5/136 (3%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           L + V  F +     FK   T  YP + G  +PR+ G H L RYP+G E+CI C+LC   
Sbjct: 4   LWDAVAGFAVTFGTLFKKPITEEYPEKPGPVAPRYHGRHQLNRYPDGLEKCIGCELCAWA 63

Query: 73  CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           CPA AI +E     +  R   G R    Y I+ ++CI CGLC EACP  A+    ++E A
Sbjct: 64  CPADAIYVEGDDNTADERYSPGERYGRVYQINYLRCIGCGLCIEACPTRALTMTNDYEMA 123

Query: 128 TETRQELYYDKERLLN 143
            + R +L + K++LL 
Sbjct: 124 DDNRADLIWGKDKLLA 139


>gi|126434140|ref|YP_001069831.1| NADH dehydrogenase subunit I [Mycobacterium sp. JLS]
 gi|156633528|sp|A3PWR3|NUOI_MYCSJ RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|126233940|gb|ABN97340.1| NADH dehydrogenase subunit I [Mycobacterium sp. JLS]
          Length = 174

 Score =  137 bits (345), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 53/136 (38%), Positives = 74/136 (54%), Gaps = 5/136 (3%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           L + V  F +     FK   T  YP + G  +PR+ G H L RYP+G E+CI C+LC   
Sbjct: 4   LWDAVAGFAVTFGTLFKKPITEEYPEKPGPVAPRYHGRHQLNRYPDGLEKCIGCELCAWA 63

Query: 73  CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           CPA AI +E     +  R   G R    Y I+ ++CI CGLC EACP  A+    ++E A
Sbjct: 64  CPADAIYVEGDDNTADERYSPGERYGRVYQINYLRCIGCGLCIEACPTRALTMTNDYEMA 123

Query: 128 TETRQELYYDKERLLN 143
            + R +L + K++LL 
Sbjct: 124 DDNRADLIWGKDKLLA 139


>gi|302864909|ref|YP_003833546.1| NADH-quinone oxidoreductase subunit I [Micromonospora aurantiaca
           ATCC 27029]
 gi|315501194|ref|YP_004080081.1| NADH-quinone oxidoreductase, chain i [Micromonospora sp. L5]
 gi|302567768|gb|ADL43970.1| NADH-quinone oxidoreductase, chain I [Micromonospora aurantiaca
           ATCC 27029]
 gi|315407813|gb|ADU05930.1| NADH-quinone oxidoreductase, chain I [Micromonospora sp. L5]
          Length = 215

 Score =  137 bits (345), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 51/136 (37%), Positives = 74/136 (54%), Gaps = 5/136 (3%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           +      F +   + FK   T +YPF+   ++PR+ G H L R+P+G E+CI C+LC   
Sbjct: 4   ITGTFKGFGVTFSHMFKKVVTTDYPFKPPVSAPRYHGRHILNRHPDGLEKCIGCELCAWA 63

Query: 73  CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           CPA AI +E        R   G R    Y I+  +CI+CGLC EACP  ++     +E A
Sbjct: 64  CPADAIYVEGGDNTEEQRFSPGERYASTYQINYARCIFCGLCIEACPTRSLTMSNEYELA 123

Query: 128 TETRQELYYDKERLLN 143
            + RQ+L + KE+LL 
Sbjct: 124 RDNRQDLIFTKEQLLA 139


>gi|229490857|ref|ZP_04384692.1| NADH-quinone oxidoreductase subunit i [Rhodococcus erythropolis
           SK121]
 gi|229322247|gb|EEN88033.1| NADH-quinone oxidoreductase subunit i [Rhodococcus erythropolis
           SK121]
          Length = 185

 Score =  137 bits (345), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 53/132 (40%), Positives = 69/132 (52%), Gaps = 5/132 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           +  F + L   FK   T  YP EK  T+P + G H L RY +G E+CI C+LC   CPA 
Sbjct: 8   IAGFGVTLSTMFKKPETEFYPEEKRPTAPGYHGRHQLNRYADGLEKCIGCELCAWACPAD 67

Query: 77  AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E        R   G R    Y I+ ++CI CGLC EACP  A+     +E   + R
Sbjct: 68  AIYVEGADNTEEERFSPGERYGRVYQINYLRCIGCGLCVEACPTRALTMTNEYEMTDDNR 127

Query: 132 QELYYDKERLLN 143
             L Y+K+RLL 
Sbjct: 128 AGLIYEKDRLLA 139


>gi|325676675|ref|ZP_08156350.1| NADH-quinone oxidoreductase subunit I [Rhodococcus equi ATCC 33707]
 gi|325552530|gb|EGD22217.1| NADH-quinone oxidoreductase subunit I [Rhodococcus equi ATCC 33707]
          Length = 181

 Score =  137 bits (345), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 53/136 (38%), Positives = 71/136 (52%), Gaps = 5/136 (3%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
             + V  F +     FK   T  YP +K  T+ R+ G H L R+P+G E+CI C+LC   
Sbjct: 4   FLDSVAGFGVTFSTMFKKPVTEFYPEQKAPTAERYHGRHQLNRHPDGLEKCIGCELCAWA 63

Query: 73  CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           CPA AI +E        R   G R    Y I+ ++CI CGLC EACP  A+     +E A
Sbjct: 64  CPADAIYVEGADNTEEERYSPGERYGRVYQINYLRCIGCGLCVEACPTRALTMTNEYEMA 123

Query: 128 TETRQELYYDKERLLN 143
            + R +L Y K+RLL 
Sbjct: 124 DDNRIDLIYGKDRLLA 139


>gi|226365388|ref|YP_002783171.1| NADH dehydrogenase subunit I [Rhodococcus opacus B4]
 gi|254772596|sp|C1AZF5|NUOI_RHOOB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|226243878|dbj|BAH54226.1| NADH-quinone oxidoreductase chain I [Rhodococcus opacus B4]
          Length = 188

 Score =  137 bits (344), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 54/132 (40%), Positives = 70/132 (53%), Gaps = 5/132 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           +  F +     FK   T  YP EK  T+PR+ G H L RY +G E+CI C+LC   CPA 
Sbjct: 8   IAGFGVTFSTMFKKANTEFYPEEKTPTAPRYHGRHQLNRYADGLEKCIGCELCAWACPAD 67

Query: 77  AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E        R   G R    Y I+ ++CI CGLC EACP  A+     +E A + R
Sbjct: 68  AIFVEGADNTDEERYSPGERYGRVYQINYLRCIGCGLCIEACPTRALTMTNEYEMADDNR 127

Query: 132 QELYYDKERLLN 143
             L Y+K+RLL 
Sbjct: 128 AGLIYEKDRLLA 139


>gi|254382434|ref|ZP_04997793.1| NADH-quinone oxidoreductase subunit I 1 [Streptomyces sp. Mg1]
 gi|194341338|gb|EDX22304.1| NADH-quinone oxidoreductase subunit I 1 [Streptomyces sp. Mg1]
          Length = 201

 Score =  137 bits (344), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 55/132 (41%), Positives = 72/132 (54%), Gaps = 5/132 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  F +  +  FK + T  YP +  +T+PRF G H L R+P+G E+CI C+LC   CPA 
Sbjct: 16  VAGFGVTFKAMFKKRLTEQYPEQPKTTAPRFHGRHQLNRHPDGLEKCIGCELCAWACPAD 75

Query: 77  AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E        R   G R    Y I+  +CI CGLC EACP  A+     FE A  +R
Sbjct: 76  AIYVEGADNTEEERYSPGERYGAVYQINYARCILCGLCIEACPTRALTMTNEFELADASR 135

Query: 132 QELYYDKERLLN 143
           + L Y KE+LL 
Sbjct: 136 ESLIYTKEQLLA 147


>gi|145225068|ref|YP_001135746.1| NADH dehydrogenase subunit I [Mycobacterium gilvum PYR-GCK]
 gi|226737403|sp|A4TDB3|NUOI_MYCGI RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|145217554|gb|ABP46958.1| NADH dehydrogenase subunit I [Mycobacterium gilvum PYR-GCK]
          Length = 175

 Score =  137 bits (344), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 51/136 (37%), Positives = 70/136 (51%), Gaps = 5/136 (3%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
             + V  F +     FK   T  YP + G  + R+ G H L RY +G E+CI C+LC   
Sbjct: 4   FLDAVAGFGVTFGSMFKKPVTEEYPEKPGPVAKRYHGRHQLNRYADGLEKCIGCELCAWA 63

Query: 73  CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           CPA AI +E        R   G R    Y I+ ++CI CGLC EACP  A+    ++E A
Sbjct: 64  CPADAIFVEGADNTEAERYSPGERYGRVYQINYLRCIGCGLCIEACPTRALTMTNDYEMA 123

Query: 128 TETRQELYYDKERLLN 143
            + R +L Y K++LL 
Sbjct: 124 DDNRADLIYGKDKLLA 139


>gi|118617954|ref|YP_906286.1| NADH dehydrogenase subunit I [Mycobacterium ulcerans Agy99]
 gi|183981490|ref|YP_001849781.1| NADH dehydrogenase I (chain I) NuoI (NADH- ubiquinone
           oxidoreductase chain I) [Mycobacterium marinum M]
 gi|156633531|sp|A0PR46|NUOI_MYCUA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|226737404|sp|B2HGE0|NUOI_MYCMM RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|118570064|gb|ABL04815.1| NADH dehydrogenase I (chain I) NuoI (NADH- ubiquinone
           oxidoreductase chain I) [Mycobacterium ulcerans Agy99]
 gi|183174816|gb|ACC39926.1| NADH dehydrogenase I (chain I) NuoI (NADH- ubiquinone
           oxidoreductase chain I) [Mycobacterium marinum M]
          Length = 181

 Score =  137 bits (344), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 53/136 (38%), Positives = 73/136 (53%), Gaps = 5/136 (3%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
             + +  F +     FK   T  YP + G  +PR+ G H L RYP+G E+CI C+LC   
Sbjct: 4   FLDSIAGFGVTFGSMFKKTVTEEYPEKPGPVAPRYHGRHQLNRYPDGLEKCIGCELCAWA 63

Query: 73  CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           CPA AI +E        R   G R    Y I+ ++CI CGLC EACP  A+    ++E A
Sbjct: 64  CPADAIYVEGADNTDEQRFSPGERYGRVYQINYLRCIGCGLCIEACPTRALTMTNDYELA 123

Query: 128 TETRQELYYDKERLLN 143
            + R +L Y+K+RLL 
Sbjct: 124 DDNRADLIYEKDRLLA 139


>gi|117927484|ref|YP_872035.1| NADH dehydrogenase subunit I [Acidothermus cellulolyticus 11B]
 gi|156632698|sp|A0LRI9|NUOI_ACIC1 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|117647947|gb|ABK52049.1| NADH dehydrogenase subunit I [Acidothermus cellulolyticus 11B]
          Length = 199

 Score =  136 bits (343), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 54/136 (39%), Positives = 72/136 (52%), Gaps = 5/136 (3%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           L   +  F +     F+  TT  YP EK  T PR+ G H L R+P+G E+CI C+LC   
Sbjct: 5   LPGPLRGFGVTFGTMFRRVTTEQYPDEKKPTMPRYHGRHVLNRHPDGLEKCIGCELCAWA 64

Query: 73  CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           CPA AI +E        R   G R    Y I+ ++CI+CG C EACP  A+     +E A
Sbjct: 65  CPADAIYVEGADNTEEERYSPGERYGRVYQINYLRCIFCGYCIEACPTRALTMSNEYELA 124

Query: 128 TETRQELYYDKERLLN 143
            + R +L Y KE+LL 
Sbjct: 125 DDNRADLIYTKEQLLA 140


>gi|254819280|ref|ZP_05224281.1| NADH dehydrogenase subunit I [Mycobacterium intracellulare ATCC
           13950]
          Length = 181

 Score =  136 bits (343), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 55/136 (40%), Positives = 74/136 (54%), Gaps = 5/136 (3%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
             + V  F + L   FK + T  YP + G   PR+ G H L RYP+G E+CI C+LC   
Sbjct: 4   FLDAVAGFGVTLGSMFKKRVTEEYPEKPGPVMPRYHGRHQLNRYPDGLEKCIGCELCAWA 63

Query: 73  CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           CPA AI +E        R   G R    Y I+ ++CI CGLC EACP  A+    ++E A
Sbjct: 64  CPADAIYVEGADNTEELRYSPGERYGRVYQINYLRCIGCGLCIEACPTRALTMTNDYEMA 123

Query: 128 TETRQELYYDKERLLN 143
            + R +L Y+K+RLL 
Sbjct: 124 DDNRADLIYEKDRLLA 139


>gi|326382755|ref|ZP_08204445.1| NADH dehydrogenase subunit I [Gordonia neofelifaecis NRRL B-59395]
 gi|326198345|gb|EGD55529.1| NADH dehydrogenase subunit I [Gordonia neofelifaecis NRRL B-59395]
          Length = 184

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 50/136 (36%), Positives = 72/136 (52%), Gaps = 5/136 (3%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           + + +  F +     F+   T  YP +K  TS R+ G H L RY +G E+CI C+LC   
Sbjct: 1   MGDALAGFGVTFSGMFRKTVTEQYPEQKEPTSRRYHGRHQLNRYDDGLEKCIGCELCAWA 60

Query: 73  CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           CPA AI +E        R   G R    Y I+ ++CI CGLC EACP  A+    ++E A
Sbjct: 61  CPADAIYVEGADNTDDERYSPGERYGRVYQINYLRCIGCGLCIEACPTRALTMTNDYEMA 120

Query: 128 TETRQELYYDKERLLN 143
             +R  + Y+K++LL 
Sbjct: 121 GPSRAGMIYEKDQLLA 136


>gi|118467785|ref|YP_886416.1| NADH dehydrogenase subunit I [Mycobacterium smegmatis str. MC2 155]
 gi|156633527|sp|A0QU28|NUOI_MYCS2 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|118169072|gb|ABK69968.1| NADH-quinone oxidoreductase, I subunit [Mycobacterium smegmatis
           str. MC2 155]
          Length = 180

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 52/136 (38%), Positives = 73/136 (53%), Gaps = 5/136 (3%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
             + +  F + L   FK   T  YP + G  +PR+ G H L RYP+G E+CI C+LC   
Sbjct: 4   FLDALAGFAVTLGSMFKKPITEGYPEKPGPVAPRYHGRHQLNRYPDGLEKCIGCELCAWA 63

Query: 73  CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           CPA AI +E     +  R   G R    Y I+ ++CI CGLC EACP  A+     +E A
Sbjct: 64  CPADAIYVEGADNTADERYSPGERYGRVYQINYLRCIGCGLCIEACPTRALTMTTEYEMA 123

Query: 128 TETRQELYYDKERLLN 143
            + R +L + K++LL 
Sbjct: 124 DDNRADLIWGKDKLLA 139


>gi|284034161|ref|YP_003384092.1| NADH-quinone oxidoreductase subunit I [Kribbella flavida DSM 17836]
 gi|283813454|gb|ADB35293.1| NADH-quinone oxidoreductase, chain I [Kribbella flavida DSM 17836]
          Length = 182

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 57/136 (41%), Positives = 76/136 (55%), Gaps = 5/136 (3%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           L + V  F +  R  F+   T  YPF+K  T+PRF G H L R+P+G E+CI C+LC   
Sbjct: 8   LWDPVAGFGVTFRTMFRKVFTEQYPFDKKPTAPRFHGRHQLNRWPDGLEKCIGCELCAWA 67

Query: 73  CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           CPA AI +E      G R   G R    Y I+ ++CI CGLC EACP  A+     +E A
Sbjct: 68  CPADAIYVEGADNTEGGRMSPGERYGRVYQINYLRCILCGLCIEACPTRALTMTNEYELA 127

Query: 128 TETRQELYYDKERLLN 143
             +R+ L Y+K+ LL 
Sbjct: 128 DRSRESLIYEKKDLLA 143


>gi|285017800|ref|YP_003375511.1| NADH-quinone oxidoreductase subunitI(nadh dehydrogenaseIsubunitI
           (ndh-1 subunitI (nuo9) oxidoreductase [Xanthomonas
           albilineans GPE PC73]
 gi|283473018|emb|CBA15523.1| probable nadh-quinone oxidoreductase subunitI(nadh
           dehydrogenaseIsubunitI (ndh-1 subunitI (nuo9)
           oxidoreductase protein [Xanthomonas albilineans]
          Length = 162

 Score =  136 bits (342), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 86/139 (61%), Positives = 100/139 (71%), Gaps = 1/139 (0%)

Query: 25  RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84
           +Y F+ K T+ YP EK   SPRFRG HALRRYPNGEERCIACKLCEA+CPA AITI+S  
Sbjct: 25  KYTFRPKYTVLYPMEKFPQSPRFRGLHALRRYPNGEERCIACKLCEAVCPALAITIDSTK 84

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNN 144
           R  DGTRRT RYDID+ KCIYCG C+E+CPVD+IVE    E+  E R E    K +LL  
Sbjct: 85  R-EDGTRRTTRYDIDLFKCIYCGFCEESCPVDSIVETQVLEYHFEKRGENIVTKPQLLAI 143

Query: 145 GDRWESEIVRNIVTDSPYR 163
           GDR E+EI      D+P+R
Sbjct: 144 GDRLEAEIAERRAADAPFR 162


>gi|315445437|ref|YP_004078316.1| NADH dehydrogenase subunit I [Mycobacterium sp. Spyr1]
 gi|315263740|gb|ADU00482.1| NADH dehydrogenase subunit I [Mycobacterium sp. Spyr1]
          Length = 175

 Score =  135 bits (341), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 51/136 (37%), Positives = 69/136 (50%), Gaps = 5/136 (3%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
             + V  F +     FK   T  YP   G  + R+ G H L RY +G E+CI C+LC   
Sbjct: 4   FLDAVAGFGVTFGSMFKKPVTEEYPEMPGPVAKRYHGRHQLNRYADGLEKCIGCELCAWA 63

Query: 73  CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           CPA AI +E        R   G R    Y I+ ++CI CGLC EACP  A+    ++E A
Sbjct: 64  CPADAIFVEGADNTEAERYSPGERYGRVYQINYLRCIGCGLCIEACPTRALTMTNDYEMA 123

Query: 128 TETRQELYYDKERLLN 143
            + R +L Y K++LL 
Sbjct: 124 DDNRADLIYGKDKLLA 139


>gi|312139316|ref|YP_004006652.1| NADH dehydrogenase (quinone) chain i nuoi [Rhodococcus equi 103S]
 gi|311888655|emb|CBH47967.1| NADH dehydrogenase (quinone) chain I NuoI [Rhodococcus equi 103S]
          Length = 181

 Score =  135 bits (341), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 53/135 (39%), Positives = 71/135 (52%), Gaps = 5/135 (3%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
             + V  F +     FK   T  YP +K  T+ R+ G H L R+P+G E+CI C+LC   
Sbjct: 4   FLDSVAGFGVTFSTMFKKPVTEFYPEQKAPTAERYHGRHQLNRHPDGLEKCIGCELCAWA 63

Query: 73  CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           CPA AI +E        R   G R    Y I+ ++CI CGLC EACP  A+     +E A
Sbjct: 64  CPADAIYVEGADNTEEERYSPGERYGRVYQINYLRCIGCGLCVEACPTRALTMTNEYEMA 123

Query: 128 TETRQELYYDKERLL 142
            + R +L Y K+RLL
Sbjct: 124 DDNRIDLIYGKDRLL 138


>gi|119714792|ref|YP_921757.1| NADH dehydrogenase subunit I [Nocardioides sp. JS614]
 gi|156633534|sp|A1SE35|NUOI_NOCSJ RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|119535453|gb|ABL80070.1| NADH dehydrogenase subunit I [Nocardioides sp. JS614]
          Length = 196

 Score =  135 bits (341), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 55/140 (39%), Positives = 74/140 (52%), Gaps = 9/140 (6%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
             + +  F +  R  FK   T  YPF+K  T+PRF G H L R+P+G E+C+ C+LC   
Sbjct: 14  FWDPIAGFGVTFRTMFKKVVTEQYPFDKYPTAPRFHGRHQLNRWPDGLEKCVGCELCAWA 73

Query: 73  CPAQAITIES---------GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           CPA AI +E          G R   G R    Y I+ ++CI CGLC EACP  A+     
Sbjct: 74  CPADAIYVEGASNSDDPDGGERFSPGERYGRVYQINYLRCILCGLCIEACPTRALTMTNE 133

Query: 124 FEFATETRQELYYDKERLLN 143
           +E A + R +L Y+K  LL 
Sbjct: 134 YELADDNRADLIYEKSDLLA 153


>gi|294630804|ref|ZP_06709364.1| NADH-quinone oxidoreductase, I subunit [Streptomyces sp. e14]
 gi|292834137|gb|EFF92486.1| NADH-quinone oxidoreductase, I subunit [Streptomyces sp. e14]
          Length = 213

 Score =  135 bits (341), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 55/136 (40%), Positives = 73/136 (53%), Gaps = 5/136 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  F +  +  FK + T  YP +K +T+PRF G H L R+P+G E+C+ C+LC   CPA 
Sbjct: 16  VAGFGVTFKAMFKKRLTEQYPEQKKTTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 75

Query: 77  AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E        R   G R    Y I+  +CI CGLC EACP  A+     FE A  +R
Sbjct: 76  AIYVEGADNTDEERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTNEFELADSSR 135

Query: 132 QELYYDKERLLNNGDR 147
             L Y KE+LL   + 
Sbjct: 136 ANLIYTKEQLLAGLEE 151


>gi|194366596|ref|YP_002029206.1| NADH dehydrogenase subunit I [Stenotrophomonas maltophilia R551-3]
 gi|194349400|gb|ACF52523.1| NADH-quinone oxidoreductase, chain I [Stenotrophomonas maltophilia
           R551-3]
          Length = 162

 Score =  135 bits (341), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 87/139 (62%), Positives = 99/139 (71%), Gaps = 1/139 (0%)

Query: 25  RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84
           +Y FK K T+ YP EK   SPRFRG HALRRYPNGEERCIACKLCEA+CPA AITI+S  
Sbjct: 25  KYSFKPKYTMMYPMEKFPQSPRFRGLHALRRYPNGEERCIACKLCEAVCPALAITIDSAK 84

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNN 144
           R  DGTRRT RYDID+ KCI+CG C+E+CPVD+IVE    E+  E R E    K +LL  
Sbjct: 85  R-EDGTRRTTRYDIDLFKCIFCGFCEESCPVDSIVETHILEYHFENRGENIVTKPQLLAL 143

Query: 145 GDRWESEIVRNIVTDSPYR 163
           GDR ESEI      D+ YR
Sbjct: 144 GDRLESEIAERRAADAAYR 162


>gi|169629228|ref|YP_001702877.1| NADH dehydrogenase subunit I [Mycobacterium abscessus ATCC 19977]
 gi|169241195|emb|CAM62223.1| NADH-quinone oxidoreductase, I subunit NuoI [Mycobacterium
           abscessus]
          Length = 178

 Score =  135 bits (341), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 52/134 (38%), Positives = 74/134 (55%), Gaps = 5/134 (3%)

Query: 15  EFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP 74
           + +  F++     FK + T  YP +K  T+PR+ G H L RY +G E+CI C+LC   CP
Sbjct: 10  DAMAGFWVTFSSMFKKRLTEQYPEKKQPTAPRYHGRHQLNRYADGLEKCIGCELCAWACP 69

Query: 75  AQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           A AI +E        R   G R    Y I+ ++CI CGLC EACP  A+    ++E A +
Sbjct: 70  ADAIFVEGADNSEEERFSPGERYGRVYQINYLRCIGCGLCIEACPTRALTMTNDYEMADD 129

Query: 130 TRQELYYDKERLLN 143
            R +L Y K++LL 
Sbjct: 130 NRADLIYGKDKLLA 143


>gi|111022880|ref|YP_705852.1| NADH dehydrogenase subunit I [Rhodococcus jostii RHA1]
 gi|123045604|sp|Q0S442|NUOI_RHOSR RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|110822410|gb|ABG97694.1| probable NADH dehydrogenase subunit I [Rhodococcus jostii RHA1]
          Length = 188

 Score =  135 bits (341), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 54/132 (40%), Positives = 70/132 (53%), Gaps = 5/132 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           +  F +     FK   T  YP EK  T+PR+ G H L RY +G E+CI C+LC   CPA 
Sbjct: 8   IAGFGVTFSTMFKKSNTEFYPEEKVPTAPRYHGRHQLNRYADGLEKCIGCELCAWACPAD 67

Query: 77  AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E        R   G R    Y I+ ++CI CGLC EACP  A+     +E A + R
Sbjct: 68  AIYVEGADNTDEERFSPGERYGQVYQINYLRCIGCGLCIEACPTRALTMTNEYEMADDNR 127

Query: 132 QELYYDKERLLN 143
             L Y+K+RLL 
Sbjct: 128 AGLIYEKDRLLA 139


>gi|120402875|ref|YP_952704.1| NADH dehydrogenase subunit I [Mycobacterium vanbaalenii PYR-1]
 gi|156633532|sp|A1T698|NUOI_MYCVP RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|119955693|gb|ABM12698.1| NADH dehydrogenase subunit I [Mycobacterium vanbaalenii PYR-1]
          Length = 174

 Score =  135 bits (341), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 52/136 (38%), Positives = 71/136 (52%), Gaps = 5/136 (3%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
             + V  F +     FK   T  YP + G  + R+ G H L RYP+G E+CI C+LC   
Sbjct: 4   FLDAVAGFGVTFGSMFKKPVTEEYPEKPGPVAKRYHGRHQLNRYPDGLEKCIGCELCAWA 63

Query: 73  CPAQAITIESG-----PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           CPA AI +E        R   G R    Y I+ ++CI CGLC EACP  A+    ++E A
Sbjct: 64  CPADAIFVEGADNTESERYSPGERYGRVYQINYLRCIGCGLCIEACPTRALTMTNDYEMA 123

Query: 128 TETRQELYYDKERLLN 143
            + R +L Y K++LL 
Sbjct: 124 DDNRSDLIYGKDKLLA 139


>gi|111220507|ref|YP_711301.1| NADH dehydrogenase subunit I [Frankia alni ACN14a]
 gi|123044863|sp|Q0RRW0|NUOI_FRAAA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|111148039|emb|CAJ59705.1| NADH dehydrogenase (quinone) [Frankia alni ACN14a]
          Length = 220

 Score =  135 bits (341), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 53/136 (38%), Positives = 74/136 (54%), Gaps = 5/136 (3%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
             +    F +     FK  TT  YP  K  T+PRF G H L R+P+G E+C+ C+LC   
Sbjct: 3   FFDPYKGFGVTFSTMFKKPTTEQYPEYKKETAPRFHGRHQLNRHPDGLEKCVGCELCAWA 62

Query: 73  CPAQAITIESG-----PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           CPA AI +E        R   G R    Y I+ ++CI CGLC EACP  A+    ++E A
Sbjct: 63  CPADAIYVEGADNTETERYSPGERYGSVYQINYLRCILCGLCIEACPTRALTMSNDYELA 122

Query: 128 TETRQELYYDKERLLN 143
            ++R++L + KE+LL 
Sbjct: 123 DDSRRDLIFTKEQLLA 138


>gi|296169182|ref|ZP_06850836.1| NADH-quinone oxidoreductase subunit I [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295896161|gb|EFG75827.1| NADH-quinone oxidoreductase subunit I [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 181

 Score =  135 bits (341), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 54/136 (39%), Positives = 73/136 (53%), Gaps = 5/136 (3%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
             + V  F +     FK   T  YP + G  +PR+ G H L RYP+G E+CI C+LC   
Sbjct: 4   FLDAVAGFGVTFGSMFKRNVTEEYPEKPGPVAPRYHGRHQLNRYPDGLEKCIGCELCAWA 63

Query: 73  CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           CPA AI +E        R   G R    Y I+ ++CI CGLC EACP  A+    ++E A
Sbjct: 64  CPADAIYVEGADNTEELRYSPGERYGRVYQINYLRCIGCGLCIEACPTRALTMTNDYEMA 123

Query: 128 TETRQELYYDKERLLN 143
            + R +L Y+K+RLL 
Sbjct: 124 DDNRADLIYEKDRLLA 139


>gi|254391145|ref|ZP_05006352.1| NADH-quinone oxidoreductase subunit I [Streptomyces clavuligerus
           ATCC 27064]
 gi|197704839|gb|EDY50651.1| NADH-quinone oxidoreductase subunit I [Streptomyces clavuligerus
           ATCC 27064]
          Length = 217

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 55/132 (41%), Positives = 72/132 (54%), Gaps = 5/132 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  F +  +  FK + T  YP E+  T+PRF G H L R+P+G E+C+ C+LC   CPA 
Sbjct: 23  VAGFGVTFKAMFKRRLTEQYPEEQKVTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 82

Query: 77  AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E        R   G R    Y I+  +CI CGLC EACP  A+     FE A  +R
Sbjct: 83  AIYVEGADNTDEERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTNEFELADSSR 142

Query: 132 QELYYDKERLLN 143
           + L Y KE+LL 
Sbjct: 143 ENLIYTKEQLLA 154


>gi|298246358|ref|ZP_06970164.1| NADH-quinone oxidoreductase, chain I [Ktedonobacter racemifer DSM
           44963]
 gi|297553839|gb|EFH87704.1| NADH-quinone oxidoreductase, chain I [Ktedonobacter racemifer DSM
           44963]
          Length = 208

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 56/134 (41%), Positives = 74/134 (55%), Gaps = 5/134 (3%)

Query: 15  EFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP 74
           E +      L+   K  TTI+YP E+   +PRFRG H L RY NG ERC+ C LC   CP
Sbjct: 4   EILKGMTTTLKNMGKKPTTISYPEEERELAPRFRGRHVLHRYDNGLERCVGCYLCAGACP 63

Query: 75  AQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           A AI IE        R   G R    +D++M++CI+CG CQ ACP  AI     ++ A+ 
Sbjct: 64  ADAIYIEAAENTEEERVSPGERYARVFDVNMLRCIFCGYCQAACPTGAITLEKEYKLASF 123

Query: 130 TRQELYYDKERLLN 143
             ++L Y KE+LL 
Sbjct: 124 HPEDLVYHKEQLLE 137


>gi|72163086|ref|YP_290743.1| NADH dehydrogenase subunit I [Thermobifida fusca YX]
 gi|110287776|sp|Q47LF2|NUOI_THEFY RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|71916818|gb|AAZ56720.1| NADH-quinone oxidoreductase, chain I [Thermobifida fusca YX]
          Length = 183

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 55/132 (41%), Positives = 71/132 (53%), Gaps = 5/132 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  F +     FK   T+ YP  K  T PRF G H L R+P+G E+CI C+LC   CPA 
Sbjct: 8   VKGFGVTFHTMFKKVPTVEYPEVKAPTMPRFHGRHQLNRWPDGLEKCIGCELCAWACPAD 67

Query: 77  AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E        R   G R    Y I+ ++CI CGLC EACP  A+     +E A ++R
Sbjct: 68  AIYVEAGDNTEEERYSPGERYGRVYQINYLRCILCGLCVEACPTRALTMTNEYELADDSR 127

Query: 132 QELYYDKERLLN 143
           + L Y KE+LL 
Sbjct: 128 ESLIYTKEQLLA 139


>gi|290958252|ref|YP_003489434.1| NADH dehydrogenase subunit NuoI [Streptomyces scabiei 87.22]
 gi|260647778|emb|CBG70883.1| NuoI, NADH dehydrogenase subunit [Streptomyces scabiei 87.22]
          Length = 213

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 54/136 (39%), Positives = 73/136 (53%), Gaps = 5/136 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  F +  +  FK + T  YP ++ +T+PRF G H L R+P+G E+C+ C+LC   CPA 
Sbjct: 16  VAGFGVTFKAMFKKRLTEQYPEQQKTTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 75

Query: 77  AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E        R   G R    Y I+  +CI CGLC EACP  A+     FE A  +R
Sbjct: 76  AIYVEGADNTDEERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTNEFELADSSR 135

Query: 132 QELYYDKERLLNNGDR 147
             L Y KE+LL   + 
Sbjct: 136 ANLIYTKEQLLAGLEE 151


>gi|302559099|ref|ZP_07311441.1| NADH-quinone oxidoreductase, I subunit [Streptomyces griseoflavus
           Tu4000]
 gi|302476717|gb|EFL39810.1| NADH-quinone oxidoreductase, I subunit [Streptomyces griseoflavus
           Tu4000]
          Length = 213

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 54/136 (39%), Positives = 73/136 (53%), Gaps = 5/136 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  F +  +  FK + T  YP ++ +T+PRF G H L R+P+G E+C+ C+LC   CPA 
Sbjct: 16  VAGFGVTFKAMFKKRLTEQYPEQQKTTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 75

Query: 77  AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E        R   G R    Y I+  +CI CGLC EACP  A+     FE A  +R
Sbjct: 76  AIYVEGADNTDEERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTNEFELADSSR 135

Query: 132 QELYYDKERLLNNGDR 147
             L Y KE+LL   + 
Sbjct: 136 ANLIYTKEQLLAGLEE 151


>gi|294814402|ref|ZP_06773045.1| NADH-quinone oxidoreductase subunit I [Streptomyces clavuligerus
           ATCC 27064]
 gi|326442792|ref|ZP_08217526.1| NADH dehydrogenase subunit I [Streptomyces clavuligerus ATCC 27064]
 gi|294327001|gb|EFG08644.1| NADH-quinone oxidoreductase subunit I [Streptomyces clavuligerus
           ATCC 27064]
          Length = 206

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 55/132 (41%), Positives = 72/132 (54%), Gaps = 5/132 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  F +  +  FK + T  YP E+  T+PRF G H L R+P+G E+C+ C+LC   CPA 
Sbjct: 12  VAGFGVTFKAMFKRRLTEQYPEEQKVTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 71

Query: 77  AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E        R   G R    Y I+  +CI CGLC EACP  A+     FE A  +R
Sbjct: 72  AIYVEGADNTDEERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTNEFELADSSR 131

Query: 132 QELYYDKERLLN 143
           + L Y KE+LL 
Sbjct: 132 ENLIYTKEQLLA 143


>gi|325921403|ref|ZP_08183260.1| NADH dehydrogenase subunit I [Xanthomonas gardneri ATCC 19865]
 gi|325548161|gb|EGD19158.1| NADH dehydrogenase subunit I [Xanthomonas gardneri ATCC 19865]
          Length = 162

 Score =  135 bits (339), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 84/139 (60%), Positives = 101/139 (72%), Gaps = 1/139 (0%)

Query: 25  RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84
           +Y FK K T+ YP EK   SPRFRG HALRRYPNGEERCIACKLCEA+CPA AITI+S  
Sbjct: 25  KYTFKPKYTVLYPMEKFPQSPRFRGVHALRRYPNGEERCIACKLCEAVCPALAITIDSAK 84

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNN 144
           R  DG+RRT RYDID+ KCI+CG C+E+CPVD+IVE    E+  E R E   +K +LL  
Sbjct: 85  R-EDGSRRTTRYDIDLFKCIFCGFCEESCPVDSIVETHLLEYHFEKRGENILNKPQLLAI 143

Query: 145 GDRWESEIVRNIVTDSPYR 163
           GDR+E+EI      D+ +R
Sbjct: 144 GDRFETEIAERRAADAAFR 162


>gi|325915547|ref|ZP_08177858.1| NADH dehydrogenase subunit I [Xanthomonas vesicatoria ATCC 35937]
 gi|325538263|gb|EGD09948.1| NADH dehydrogenase subunit I [Xanthomonas vesicatoria ATCC 35937]
          Length = 163

 Score =  135 bits (339), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 84/139 (60%), Positives = 100/139 (71%), Gaps = 1/139 (0%)

Query: 25  RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84
           +Y FK K T+ YP EK   SPRFRG HALRRYPNGEERCIACKLCEA+CPA AITI+S  
Sbjct: 26  KYTFKPKYTVLYPMEKFPQSPRFRGLHALRRYPNGEERCIACKLCEAVCPALAITIDSAK 85

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNN 144
           R  DG+RRT RYDID+ KCI+CG C+E+CPVD+IVE    E+  E R E   +K +LL  
Sbjct: 86  R-EDGSRRTTRYDIDLFKCIFCGFCEESCPVDSIVETHILEYHFEKRGENIVNKPQLLAI 144

Query: 145 GDRWESEIVRNIVTDSPYR 163
           GDR E+EI      D+ +R
Sbjct: 145 GDRLEAEIAERRAADAAFR 163


>gi|41409307|ref|NP_962143.1| NADH dehydrogenase subunit I [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|118466656|ref|YP_883193.1| NADH dehydrogenase subunit I [Mycobacterium avium 104]
 gi|254776463|ref|ZP_05217979.1| NADH dehydrogenase subunit I [Mycobacterium avium subsp. avium ATCC
           25291]
 gi|81700407|sp|Q73V07|NUOI2_MYCPA RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName:
           Full=NADH dehydrogenase I subunit I 2; AltName:
           Full=NDH-1 subunit I 2
 gi|156633525|sp|A0QJV5|NUOI_MYCA1 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|41398127|gb|AAS05757.1| NuoI_2 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|118167943|gb|ABK68840.1| NADH-quinone oxidoreductase chain 1 [Mycobacterium avium 104]
          Length = 181

 Score =  135 bits (339), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 54/136 (39%), Positives = 73/136 (53%), Gaps = 5/136 (3%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
             + V  F +     FK   T  YP + G  +PR+ G H L RYP+G E+CI C+LC   
Sbjct: 4   FLDAVAGFGVTFASMFKKHVTEEYPEKPGPVAPRYHGRHQLNRYPDGLEKCIGCELCAWA 63

Query: 73  CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           CPA AI +E        R   G R    Y I+ ++CI CGLC EACP  A+    ++E A
Sbjct: 64  CPADAIYVEGADNTEELRYSPGERYGRVYQINYLRCIGCGLCVEACPTRALTMTNDYEMA 123

Query: 128 TETRQELYYDKERLLN 143
            + R +L Y+K+RLL 
Sbjct: 124 DDNRADLIYEKDRLLA 139


>gi|239929606|ref|ZP_04686559.1| NADH dehydrogenase subunit I [Streptomyces ghanaensis ATCC 14672]
 gi|291437930|ref|ZP_06577320.1| NADH-quinone oxidoreductase [Streptomyces ghanaensis ATCC 14672]
 gi|291340825|gb|EFE67781.1| NADH-quinone oxidoreductase [Streptomyces ghanaensis ATCC 14672]
          Length = 213

 Score =  135 bits (339), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 54/136 (39%), Positives = 72/136 (52%), Gaps = 5/136 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  F +  +  FK + T  YP +  +T+PRF G H L R+P+G E+C+ C+LC   CPA 
Sbjct: 16  VAGFGVTFKAMFKKRLTEQYPEQPKTTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 75

Query: 77  AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E        R   G R    Y I+  +CI CGLC EACP  A+     FE A  +R
Sbjct: 76  AIYVEGADNTDEERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTNEFELADSSR 135

Query: 132 QELYYDKERLLNNGDR 147
             L Y KE+LL   + 
Sbjct: 136 ANLIYTKEQLLAGLEE 151


>gi|182436769|ref|YP_001824488.1| NADH dehydrogenase subunit I [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326777364|ref|ZP_08236629.1| NAD(P)H-quinone oxidoreductase subunit I [Streptomyces cf. griseus
           XylebKG-1]
 gi|178465285|dbj|BAG19805.1| putative NADH dehydrogenase chain I [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326657697|gb|EGE42543.1| NAD(P)H-quinone oxidoreductase subunit I [Streptomyces cf. griseus
           XylebKG-1]
          Length = 232

 Score =  135 bits (339), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 54/132 (40%), Positives = 69/132 (52%), Gaps = 5/132 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  F +  +  FK + T  YP     T+PRF G H L R+P+G E+C+ C+LC   CPA 
Sbjct: 31  VAGFGVTFKAMFKKRLTEQYPETPKVTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 90

Query: 77  AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E        R   G R    Y I+  +CI CGLC EACP  A+     FE A  TR
Sbjct: 91  AIYVEGADNTEEERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTNEFELANTTR 150

Query: 132 QELYYDKERLLN 143
           + L Y K+ LL 
Sbjct: 151 ESLIYTKDELLA 162


>gi|84624716|ref|YP_452088.1| NADH dehydrogenase subunit I [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188577688|ref|YP_001914617.1| NADH dehydrogenase subunit I [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|115502548|sp|Q2P0W3|NUOI_XANOM RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|84368656|dbj|BAE69814.1| NADH-ubiquinone oxidoreductase NQO9 subunit [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
 gi|188522140|gb|ACD60085.1| NADH-quinone oxidoreductase chain 9 [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 162

 Score =  135 bits (339), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 85/139 (61%), Positives = 100/139 (71%), Gaps = 1/139 (0%)

Query: 25  RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84
           +Y FK K T+ YP EK   SPRFRG HALRRYPNGEERCIACKLCEA+CPA AITI+S  
Sbjct: 25  KYTFKPKYTVLYPMEKFPQSPRFRGLHALRRYPNGEERCIACKLCEAVCPALAITIDSAK 84

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNN 144
           R  DGTRRT RYDID+ KCI+CG C+E+CPVD+IVE    E+  E R E   +K +LL  
Sbjct: 85  R-EDGTRRTTRYDIDLFKCIFCGFCEESCPVDSIVETHILEYHFEKRGENIINKPQLLAI 143

Query: 145 GDRWESEIVRNIVTDSPYR 163
           GDR E+EI      D+ +R
Sbjct: 144 GDRLETEIAERRAADAAFR 162


>gi|256396784|ref|YP_003118348.1| NADH-quinone oxidoreductase, chain I [Catenulispora acidiphila DSM
           44928]
 gi|256363010|gb|ACU76507.1| NADH-quinone oxidoreductase, chain I [Catenulispora acidiphila DSM
           44928]
          Length = 203

 Score =  135 bits (339), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 54/132 (40%), Positives = 69/132 (52%), Gaps = 5/132 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  F +     FK +TT  YP E   T+ RF G H L R+P+G E+C+ C+LC   CPA 
Sbjct: 21  VAGFGVTFSTMFKKRTTEQYPEEPKQTALRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 80

Query: 77  AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E        R   G R    Y I+ ++CI CGLC EACP  A+     FE A  +R
Sbjct: 81  AIYVEGADNTEEERYSPGERYGRVYQINYLRCILCGLCIEACPTRALTMTNEFELADSSR 140

Query: 132 QELYYDKERLLN 143
             L Y K+ LL 
Sbjct: 141 ASLIYTKDELLA 152


>gi|158317828|ref|YP_001510336.1| NADH dehydrogenase subunit I [Frankia sp. EAN1pec]
 gi|254771924|sp|A8LC93|NUOI_FRASN RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|158113233|gb|ABW15430.1| NADH-quinone oxidoreductase, chain I [Frankia sp. EAN1pec]
          Length = 211

 Score =  135 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 53/131 (40%), Positives = 73/131 (55%), Gaps = 5/131 (3%)

Query: 18  GAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA 77
             F +     FK  TT  YP +K  T+PRF G H L R+P+G E+C+ C+LC   CPA A
Sbjct: 8   KGFGVTFSTMFKKPTTEQYPEQKKETAPRFHGRHQLNRHPDGLEKCVGCELCAWACPADA 67

Query: 78  ITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           I +E        R   G R    Y I+ ++CI CGLC EACP  A+    ++E A ++R 
Sbjct: 68  IYVEGADNTDEQRFSPGERYGRVYQINYLRCILCGLCIEACPTRALTMSNDYELADDSRD 127

Query: 133 ELYYDKERLLN 143
           +L + KE+LL 
Sbjct: 128 DLIFTKEQLLA 138


>gi|21231952|ref|NP_637869.1| NADH dehydrogenase subunit I [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66767921|ref|YP_242683.1| NADH dehydrogenase subunit I [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188991037|ref|YP_001903047.1| NADH dehydrogenase subunit I [Xanthomonas campestris pv. campestris
           str. B100]
 gi|81306102|sp|Q4UWB0|NUOI_XANC8 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|81860266|sp|Q8P7U0|NUOI_XANCP RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|21113682|gb|AAM41793.1| NADH-ubiquinone oxidoreductase NQO9 subunit [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|66573253|gb|AAY48663.1| NADH-ubiquinone oxidoreductase NQO9 subunit [Xanthomonas campestris
           pv. campestris str. 8004]
 gi|167732797|emb|CAP50991.1| NADH-ubiquinone oxidoreductase NQO9 subunit [Xanthomonas campestris
           pv. campestris]
          Length = 163

 Score =  135 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 85/139 (61%), Positives = 100/139 (71%), Gaps = 1/139 (0%)

Query: 25  RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84
           +Y FK K T+ YP EK   SPRFRG HALRRYPNGEERCIACKLCEA+CPA AITI+S  
Sbjct: 26  KYTFKPKYTVLYPMEKFPQSPRFRGLHALRRYPNGEERCIACKLCEAVCPALAITIDSAK 85

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNN 144
           R  DGTRRT RYDID+ KCI+CG C+E+CPVD+IVE    E+  E R E   +K +LL  
Sbjct: 86  R-EDGTRRTTRYDIDLFKCIFCGFCEESCPVDSIVETHILEYHFEKRGENIVNKPQLLAI 144

Query: 145 GDRWESEIVRNIVTDSPYR 163
           GDR E+EI      D+ +R
Sbjct: 145 GDRLEAEIAERRAADAAFR 163


>gi|29831388|ref|NP_826022.1| NADH dehydrogenase subunit I [Streptomyces avermitilis MA-4680]
 gi|81718118|sp|Q82DX3|NUOI1_STRAW RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName:
           Full=NADH dehydrogenase I subunit I 1; AltName:
           Full=NDH-1 subunit I 1
 gi|29608503|dbj|BAC72557.1| putative NADH dehydrogenase I chain I (complex I) [Streptomyces
           avermitilis MA-4680]
          Length = 200

 Score =  135 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 55/136 (40%), Positives = 73/136 (53%), Gaps = 5/136 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  F +  +  FK + T  YP ++ +T+PRF G H L R+P+G E+C+ C+LC   CPA 
Sbjct: 16  VAGFGVTFKAMFKKRLTEQYPEQQKTTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 75

Query: 77  AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E        R   G R    Y I+  +CI CGLC EACP  A+     FE A  +R
Sbjct: 76  AIYVEGADNTDEERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTNEFELADSSR 135

Query: 132 QELYYDKERLLNNGDR 147
             L Y KE+LL   D 
Sbjct: 136 ANLIYTKEQLLAGLDD 151


>gi|156743326|ref|YP_001433455.1| NADH-quinone oxidoreductase subunit I [Roseiflexus castenholzii DSM
           13941]
 gi|156234654|gb|ABU59437.1| NADH-quinone oxidoreductase, chain I [Roseiflexus castenholzii DSM
           13941]
          Length = 165

 Score =  135 bits (339), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 55/146 (37%), Positives = 74/146 (50%), Gaps = 5/146 (3%)

Query: 12  FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71
            +          LRY F+   T+ YP  K     RFRG H L+R+ NG ERCI C LC A
Sbjct: 1   MIGALFKGLGTTLRYLFRKPVTVEYPEVKRPVRERFRGRHQLKRFANGMERCIGCSLCAA 60

Query: 72  ICPAQAITIESGPRCH-----DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
            CPA AI +             G R   RY+I+M++CI+CG C++ACP +AIV    +E 
Sbjct: 61  ACPADAILVVPAENDPAAPNSPGERYAARYEINMLRCIFCGYCEDACPTNAIVLEHQYEL 120

Query: 127 ATETRQELYYDKERLLNNGDRWESEI 152
           +   R+     K+ LL   D+   EI
Sbjct: 121 SFYDRRSSILTKDDLLVPPDKGHGEI 146


>gi|21243424|ref|NP_643006.1| NADH dehydrogenase subunit I [Xanthomonas axonopodis pv. citri str.
           306]
 gi|78048401|ref|YP_364576.1| NADH dehydrogenase subunit I [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|289667371|ref|ZP_06488446.1| NADH dehydrogenase subunit I [Xanthomonas campestris pv. musacearum
           NCPPB4381]
 gi|294624670|ref|ZP_06703340.1| NADH dehydrogenase subunit I [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|294666769|ref|ZP_06732003.1| NADH dehydrogenase subunit I [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|325924683|ref|ZP_08186121.1| NADH dehydrogenase subunit I [Xanthomonas perforans 91-118]
 gi|81860560|sp|Q8PJ48|NUOI_XANAC RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|115502547|sp|Q3BRN7|NUOI_XANC5 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|21108976|gb|AAM37542.1| NADH-ubiquinone oxidoreductase NQO9 subunit [Xanthomonas axonopodis
           pv. citri str. 306]
 gi|78036831|emb|CAJ24524.1| NADH-ubiquinone oxidoreductase NQO9 subunit [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
 gi|292601026|gb|EFF45093.1| NADH dehydrogenase subunit I [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292603430|gb|EFF46847.1| NADH dehydrogenase subunit I [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|325544889|gb|EGD16234.1| NADH dehydrogenase subunit I [Xanthomonas perforans 91-118]
          Length = 162

 Score =  134 bits (338), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 85/139 (61%), Positives = 100/139 (71%), Gaps = 1/139 (0%)

Query: 25  RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84
           +Y FK K T+ YP EK   SPRFRG HALRRYPNGEERCIACKLCEA+CPA AITI+S  
Sbjct: 25  KYTFKPKYTVLYPMEKFPQSPRFRGLHALRRYPNGEERCIACKLCEAVCPALAITIDSAK 84

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNN 144
           R  DGTRRT RYDID+ KCI+CG C+E+CPVD+IVE    E+  E R E   +K +LL  
Sbjct: 85  R-EDGTRRTTRYDIDLFKCIFCGFCEESCPVDSIVETHILEYHFEKRGENIVNKPQLLAI 143

Query: 145 GDRWESEIVRNIVTDSPYR 163
           GDR E+EI      D+ +R
Sbjct: 144 GDRLETEIAERRAADAAFR 162


>gi|58582850|ref|YP_201866.1| NADH dehydrogenase subunit I [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|75508126|sp|Q5GXU0|NUOI_XANOR RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|58427444|gb|AAW76481.1| NADH-ubiquinone oxidoreductase NQO9 subunit [Xanthomonas oryzae pv.
           oryzae KACC10331]
          Length = 163

 Score =  134 bits (338), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 85/139 (61%), Positives = 100/139 (71%), Gaps = 1/139 (0%)

Query: 25  RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84
           +Y FK K T+ YP EK   SPRFRG HALRRYPNGEERCIACKLCEA+CPA AITI+S  
Sbjct: 26  KYTFKPKYTVLYPMEKFPQSPRFRGLHALRRYPNGEERCIACKLCEAVCPALAITIDSAK 85

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNN 144
           R  DGTRRT RYDID+ KCI+CG C+E+CPVD+IVE    E+  E R E   +K +LL  
Sbjct: 86  R-EDGTRRTTRYDIDLFKCIFCGFCEESCPVDSIVETHILEYHFEKRGENIINKPQLLAI 144

Query: 145 GDRWESEIVRNIVTDSPYR 163
           GDR E+EI      D+ +R
Sbjct: 145 GDRLETEIAERRAADAAFR 163


>gi|292492181|ref|YP_003527620.1| NADH-quinone oxidoreductase, chain I [Nitrosococcus halophilus Nc4]
 gi|291580776|gb|ADE15233.1| NADH-quinone oxidoreductase, chain I [Nitrosococcus halophilus Nc4]
          Length = 180

 Score =  134 bits (338), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 56/140 (40%), Positives = 75/140 (53%), Gaps = 1/140 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
             +  L L   + + +    + F+ K TI YP EK   +PR+RG   L R P+GEERC+A
Sbjct: 3   NQLKSLSLGSELRSLWTVFLHLFRPKATIQYPEEKPYIAPRWRGRIILSRDPDGEERCVA 62

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           C LC   CP   I ++       G      + I+  +CI+CGLC+EACP  AI   P+FE
Sbjct: 63  CNLCAVACPVDCIALQKAED-EQGRWYPEFFRINFSRCIFCGLCEEACPTYAIQLTPDFE 121

Query: 126 FATETRQELYYDKERLLNNG 145
                RQ L Y+KE LL NG
Sbjct: 122 MGEYERQNLVYEKEDLLING 141


>gi|302553434|ref|ZP_07305776.1| NADH-plastoquinone oxidoreductase, I subunit [Streptomyces
           viridochromogenes DSM 40736]
 gi|302471052|gb|EFL34145.1| NADH-plastoquinone oxidoreductase, I subunit [Streptomyces
           viridochromogenes DSM 40736]
          Length = 235

 Score =  134 bits (338), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 54/136 (39%), Positives = 74/136 (54%), Gaps = 5/136 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  F +  +  FK + T  YP ++ +T+PRF G H L R+P+G E+C+ C+LC   CPA 
Sbjct: 38  VAGFGVTFKAMFKKRLTEQYPEQQKTTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 97

Query: 77  AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E        R   G R    Y I+  +CI CGLC EACP  A+    +FE A  +R
Sbjct: 98  AIYVEGADNTDEERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTNDFELADSSR 157

Query: 132 QELYYDKERLLNNGDR 147
             L Y KE+LL   + 
Sbjct: 158 ANLIYTKEQLLAGLEE 173


>gi|329935989|ref|ZP_08285789.1| NADH dehydrogenase subunit NuoI [Streptomyces griseoaurantiacus
           M045]
 gi|329304467|gb|EGG48345.1| NADH dehydrogenase subunit NuoI [Streptomyces griseoaurantiacus
           M045]
          Length = 213

 Score =  134 bits (338), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 54/136 (39%), Positives = 73/136 (53%), Gaps = 5/136 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  F +  +  FK + T  YP ++ +T+PRF G H L R+P+G E+C+ C+LC   CPA 
Sbjct: 16  VAGFGVTFKAMFKKRLTEQYPEQEKTTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 75

Query: 77  AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E        R   G R    Y I+  +CI CGLC EACP  A+     FE A  +R
Sbjct: 76  AIYVEGADNTDEERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTNEFELADSSR 135

Query: 132 QELYYDKERLLNNGDR 147
             L Y KE+LL   + 
Sbjct: 136 ANLIYTKEQLLAGLEE 151


>gi|311897898|dbj|BAJ30306.1| putative NADH-quinone oxidoreductase subunit I [Kitasatospora setae
           KM-6054]
          Length = 195

 Score =  134 bits (338), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 53/131 (40%), Positives = 71/131 (54%), Gaps = 5/131 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
              F +  +  FK + T  YP  K  T+PRF G H L R+P+G E+C+ C+LC   CPA 
Sbjct: 14  AAGFGVTFKAMFKKRLTEQYPEYKKPTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 73

Query: 77  AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E        R   G R    Y I+  +CI CGLC EACP  A+     +E A  +R
Sbjct: 74  AIYVEGADNRDDERYSPGERYGAVYQINYARCILCGLCVEACPTRALTMTNEYELADSSR 133

Query: 132 QELYYDKERLL 142
           Q+L + KE+LL
Sbjct: 134 QDLIFTKEQLL 144


>gi|289665181|ref|ZP_06486762.1| NADH dehydrogenase subunit I [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 163

 Score =  134 bits (337), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 85/139 (61%), Positives = 100/139 (71%), Gaps = 1/139 (0%)

Query: 25  RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84
           +Y FK K T+ YP EK   SPRFRG HALRRYPNGEERCIACKLCEA+CPA AITI+S  
Sbjct: 26  KYTFKPKYTVLYPMEKFPQSPRFRGLHALRRYPNGEERCIACKLCEAVCPALAITIDSAK 85

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNN 144
           R  DGTRRT RYDID+ KCI+CG C+E+CPVD+IVE    E+  E R E   +K +LL  
Sbjct: 86  R-EDGTRRTTRYDIDLFKCIFCGFCEESCPVDSIVETHILEYHFEKRGENIVNKPQLLAI 144

Query: 145 GDRWESEIVRNIVTDSPYR 163
           GDR E+EI      D+ +R
Sbjct: 145 GDRLETEIAERRAADAAFR 163


>gi|333025111|ref|ZP_08453175.1| putative NADH-plastoquinone oxidoreductase, I subunit [Streptomyces
           sp. Tu6071]
 gi|332744963|gb|EGJ75404.1| putative NADH-plastoquinone oxidoreductase, I subunit [Streptomyces
           sp. Tu6071]
          Length = 209

 Score =  134 bits (337), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 53/132 (40%), Positives = 71/132 (53%), Gaps = 5/132 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           +  F +  +  FK + T  YP +   T+PRF G H L R+P+G E+C+ C+LC   CPA 
Sbjct: 1   MAGFGVTFKAMFKKRLTEQYPEQPKVTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 60

Query: 77  AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E        R   G R    Y I+  +CI CGLC EACP  A+     FE A  TR
Sbjct: 61  AIYVEGADNTEQERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTSEFELADSTR 120

Query: 132 QELYYDKERLLN 143
           + L Y K++LL 
Sbjct: 121 ENLIYTKDQLLA 132


>gi|262200413|ref|YP_003271621.1| NADH-quinone oxidoreductase subunit I [Gordonia bronchialis DSM
           43247]
 gi|262083760|gb|ACY19728.1| NADH-quinone oxidoreductase, chain I [Gordonia bronchialis DSM
           43247]
          Length = 175

 Score =  134 bits (337), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 52/139 (37%), Positives = 74/139 (53%), Gaps = 8/139 (5%)

Query: 13  LKEFVG---AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69
           + +F+       +     F    T  YP +K  T+PR+ G H L R+P+G E+CI C+LC
Sbjct: 1   MPDFLKPVSGLGVTFSGMFSPTITEQYPEQKEPTAPRYHGRHQLNRHPDGLEKCIGCELC 60

Query: 70  EAICPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
              CPA AI +E        R   G R    Y I+ ++CI CGLC EACP  A+    ++
Sbjct: 61  AWACPADAIYVEGADNTDDERYSPGERYGRVYQINYLRCIGCGLCIEACPTRALTMTNDY 120

Query: 125 EFATETRQELYYDKERLLN 143
           E A + R +L Y+K+RLL 
Sbjct: 121 ELADDNRADLIYEKDRLLA 139


>gi|251773159|gb|EES53712.1| NADH dehydrogenase, chain I [Leptospirillum ferrodiazotrophum]
          Length = 182

 Score =  134 bits (336), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 58/146 (39%), Positives = 79/146 (54%), Gaps = 1/146 (0%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           + +  +  +   E      L LR+ F  K T  YP EK   +  +RG  A RRY +G ER
Sbjct: 1   MLKKFLDTILFTEIGQGLKLTLRHMFMKKVTSQYPKEKLVLADGYRGFIAHRRYDDGVER 60

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVR-YDIDMIKCIYCGLCQEACPVDAIVEG 121
           C+ C LCEAICPA+AI + S        RR  + Y +D  +CI+CG C  ACPV+A+   
Sbjct: 61  CVGCDLCEAICPAKAIRVVSDIHPEVPDRRYAKEYTLDFTRCIFCGFCVVACPVNALSMT 120

Query: 122 PNFEFATETRQELYYDKERLLNNGDR 147
             F  ++ TR  L Y KE++L  GDR
Sbjct: 121 KEFAHSSFTRNGLIYSKEQMLALGDR 146


>gi|328884320|emb|CCA57559.1| NADH-ubiquinone oxidoreductase chain I [Streptomyces venezuelae
           ATCC 10712]
          Length = 192

 Score =  134 bits (336), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 54/136 (39%), Positives = 74/136 (54%), Gaps = 5/136 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  F +  +  FK + T  YP ++ +T+PRF G H L R+P+G E+C+ C+LC   CPA 
Sbjct: 8   VAGFGVTFKAMFKKRLTEQYPEQQKTTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 67

Query: 77  AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E        R   G R    Y I+  +CI CGLC EACP  A+     FE A  +R
Sbjct: 68  AIYVEGADNTDEERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTNEFELADSSR 127

Query: 132 QELYYDKERLLNNGDR 147
           + L Y KE+LL   + 
Sbjct: 128 ENLIYTKEQLLAGLED 143


>gi|289769826|ref|ZP_06529204.1| NADH-quinone oxidoreductase subunit I 1 [Streptomyces lividans
           TK24]
 gi|289700025|gb|EFD67454.1| NADH-quinone oxidoreductase subunit I 1 [Streptomyces lividans
           TK24]
          Length = 247

 Score =  134 bits (336), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 53/136 (38%), Positives = 73/136 (53%), Gaps = 5/136 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  F +  +  FK + T  YP ++ +T+PRF G H L R+P+G E+C+ C+LC   CPA 
Sbjct: 50  VAGFGVTFKAMFKKRLTEQYPEQQKTTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 109

Query: 77  AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E        R   G R    Y I+  +CI CGLC EACP  A+     FE A  +R
Sbjct: 110 AIYVEGADNTDEERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTNEFELADSSR 169

Query: 132 QELYYDKERLLNNGDR 147
             L + KE+LL   + 
Sbjct: 170 ANLIFTKEQLLAGLEE 185


>gi|269128605|ref|YP_003301975.1| NADH-quinone oxidoreductase subunit I [Thermomonospora curvata DSM
           43183]
 gi|268313563|gb|ACY99937.1| NADH-quinone oxidoreductase, chain I [Thermomonospora curvata DSM
           43183]
          Length = 194

 Score =  134 bits (336), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 52/132 (39%), Positives = 70/132 (53%), Gaps = 5/132 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  F +     F+   T+ YP  K  T+PRF G H L R+P+G E+CI C+LC   CPA 
Sbjct: 10  VKGFGVAFHQMFQKSETVQYPEVKKPTAPRFHGRHQLNRWPDGLEKCIGCELCAWACPAD 69

Query: 77  AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E        R   G R    Y I+ ++CI CG+C EACP  A+     +E A + R
Sbjct: 70  AIYVEAADNTEEERYSPGERYGRVYQINYLRCILCGMCIEACPTRALTMTNEYELADDNR 129

Query: 132 QELYYDKERLLN 143
           + L Y K+ LL 
Sbjct: 130 ESLIYTKDMLLA 141


>gi|239943484|ref|ZP_04695421.1| NADH dehydrogenase subunit I [Streptomyces roseosporus NRRL 15998]
 gi|239989938|ref|ZP_04710602.1| NADH dehydrogenase subunit I [Streptomyces roseosporus NRRL 11379]
          Length = 201

 Score =  134 bits (336), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 53/132 (40%), Positives = 70/132 (53%), Gaps = 5/132 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           +  F +  +  FK + T  YP    +T+PRF G H L R+P+G E+C+ C+LC   CPA 
Sbjct: 1   MAGFGVTFKAMFKKRLTEQYPETPKTTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 60

Query: 77  AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E        R   G R    Y I+  +CI CGLC EACP  A+     FE A  TR
Sbjct: 61  AIYVEGADNTEEERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTNEFELANTTR 120

Query: 132 QELYYDKERLLN 143
           + L Y K+ LL 
Sbjct: 121 ESLIYTKDELLA 132


>gi|291446955|ref|ZP_06586345.1| NADH dehydrogenase subunit I [Streptomyces roseosporus NRRL 15998]
 gi|291349902|gb|EFE76806.1| NADH dehydrogenase subunit I [Streptomyces roseosporus NRRL 15998]
          Length = 279

 Score =  134 bits (336), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 54/132 (40%), Positives = 70/132 (53%), Gaps = 5/132 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  F +  +  FK + T  YP    +T+PRF G H L R+P+G E+C+ C+LC   CPA 
Sbjct: 79  VAGFGVTFKAMFKKRLTEQYPETPKTTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 138

Query: 77  AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E        R   G R    Y I+  +CI CGLC EACP  A+     FE A  TR
Sbjct: 139 AIYVEGADNTEEERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTNEFELANTTR 198

Query: 132 QELYYDKERLLN 143
           + L Y K+ LL 
Sbjct: 199 ESLIYTKDELLA 210


>gi|297563975|ref|YP_003682948.1| NADH-quinone oxidoreductase, chain I [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
 gi|296848424|gb|ADH70442.1| NADH-quinone oxidoreductase, chain I [Nocardiopsis dassonvillei
           subsp. dassonvillei DSM 43111]
          Length = 185

 Score =  134 bits (336), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 55/132 (41%), Positives = 73/132 (55%), Gaps = 5/132 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  F +     FK   T+ YP  K  T+PRF G H L R+ +G E+CI C+LC   CPA 
Sbjct: 8   VKGFGVTFHTMFKKVPTVEYPEVKRPTAPRFHGRHQLNRWADGLEKCIGCELCAWACPAD 67

Query: 77  AITIESGP-----RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E+G      R   G R    Y I+ ++CI CGLC EACP  A+     +E A ++R
Sbjct: 68  AIYVEAGDNTDDDRYSPGERYGRVYQINYLRCILCGLCVEACPTRALTMTNEYELADDSR 127

Query: 132 QELYYDKERLLN 143
           Q L + KE+LL 
Sbjct: 128 QSLIWTKEQLLA 139


>gi|331699304|ref|YP_004335543.1| NAD(P)H-quinone oxidoreductase subunit I [Pseudonocardia
           dioxanivorans CB1190]
 gi|326953993|gb|AEA27690.1| NAD(P)H-quinone oxidoreductase subunit I [Pseudonocardia
           dioxanivorans CB1190]
          Length = 188

 Score =  134 bits (336), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 51/136 (37%), Positives = 71/136 (52%), Gaps = 5/136 (3%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
             +F   F +     FK   T  YP +    +PR+ G H L R+P+G E+C+ C+LC   
Sbjct: 4   FVDFFKGFGVTFSTMFKKVVTEEYPEDFPPAAPRYHGRHQLNRHPDGLEKCVGCELCAWA 63

Query: 73  CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           CPA AI +E        R   G R    Y I+ ++CI CGLC EACP  ++     +E A
Sbjct: 64  CPADAIFVEGGDNTEEARYSPGERYGADYQINYLRCIGCGLCIEACPTRSLTMTNFYELA 123

Query: 128 TETRQELYYDKERLLN 143
            + RQ+L Y KE+LL 
Sbjct: 124 DDNRQDLIYTKEQLLA 139


>gi|148656359|ref|YP_001276564.1| NADH-quinone oxidoreductase subunit I [Roseiflexus sp. RS-1]
 gi|148568469|gb|ABQ90614.1| NADH-quinone oxidoreductase, chain I [Roseiflexus sp. RS-1]
          Length = 165

 Score =  134 bits (336), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 52/141 (36%), Positives = 72/141 (51%), Gaps = 5/141 (3%)

Query: 12  FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71
            +          L+Y F+   T+ YP  K     RFRG H L+R+ NG ERCI C LC A
Sbjct: 1   MIGALFKGLGTTLKYLFRKPVTVEYPEVKRPVRERFRGRHQLKRFANGMERCIGCSLCAA 60

Query: 72  ICPAQAI-----TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
            CPA AI       +       G R   RY+I+M++CI+CG C++ACP +AIV    +E 
Sbjct: 61  ACPADAILVVPAENDPAAPHSPGERYAERYEINMLRCIFCGYCEDACPTNAIVLEHQYEL 120

Query: 127 ATETRQELYYDKERLLNNGDR 147
           +   R+     K+ LL   D+
Sbjct: 121 SFYDRRSSILTKDDLLVPPDK 141


>gi|21222953|ref|NP_628732.1| NADH dehydrogenase subunit I [Streptomyces coelicolor A3(2)]
 gi|81789730|sp|Q9XAR2|NUOI1_STRCO RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName:
           Full=NADH dehydrogenase I subunit I 1; AltName:
           Full=NDH-1 subunit I 1
 gi|5042269|emb|CAB44523.1| NuoI, NADH dehydrogenase subunit [Streptomyces coelicolor A3(2)]
          Length = 211

 Score =  134 bits (336), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 53/136 (38%), Positives = 73/136 (53%), Gaps = 5/136 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  F +  +  FK + T  YP ++ +T+PRF G H L R+P+G E+C+ C+LC   CPA 
Sbjct: 14  VAGFGVTFKAMFKKRLTEQYPEQQKTTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 73

Query: 77  AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E        R   G R    Y I+  +CI CGLC EACP  A+     FE A  +R
Sbjct: 74  AIYVEGADNTDEERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTNEFELADSSR 133

Query: 132 QELYYDKERLLNNGDR 147
             L + KE+LL   + 
Sbjct: 134 ANLIFTKEQLLAGLEE 149


>gi|256785933|ref|ZP_05524364.1| NADH dehydrogenase subunit I [Streptomyces lividans TK24]
          Length = 225

 Score =  133 bits (335), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 53/136 (38%), Positives = 73/136 (53%), Gaps = 5/136 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  F +  +  FK + T  YP ++ +T+PRF G H L R+P+G E+C+ C+LC   CPA 
Sbjct: 28  VAGFGVTFKAMFKKRLTEQYPEQQKTTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 87

Query: 77  AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E        R   G R    Y I+  +CI CGLC EACP  A+     FE A  +R
Sbjct: 88  AIYVEGADNTDEERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTNEFELADSSR 147

Query: 132 QELYYDKERLLNNGDR 147
             L + KE+LL   + 
Sbjct: 148 ANLIFTKEQLLAGLEE 163


>gi|26990820|ref|NP_746245.1| NADH dehydrogenase subunit I [Pseudomonas putida KT2440]
 gi|148546977|ref|YP_001267079.1| NADH dehydrogenase subunit I [Pseudomonas putida F1]
 gi|167034694|ref|YP_001669925.1| NADH dehydrogenase subunit I [Pseudomonas putida GB-1]
 gi|170721050|ref|YP_001748738.1| NADH dehydrogenase subunit I [Pseudomonas putida W619]
 gi|81733276|sp|Q88FH0|NUOI_PSEPK RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|24985827|gb|AAN69709.1|AE016607_3 NADH dehydrogenase I, I subunit [Pseudomonas putida KT2440]
 gi|148511035|gb|ABQ77895.1| NADH-quinone oxidoreductase, chain I [Pseudomonas putida F1]
 gi|166861182|gb|ABY99589.1| NADH-quinone oxidoreductase, chain I [Pseudomonas putida GB-1]
 gi|169759053|gb|ACA72369.1| NADH-quinone oxidoreductase, chain I [Pseudomonas putida W619]
 gi|313498024|gb|ADR59390.1| NuoI [Pseudomonas putida BIRD-1]
          Length = 182

 Score =  133 bits (335), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 53/141 (37%), Positives = 76/141 (53%), Gaps = 8/141 (5%)

Query: 12  FLKEFVGA-------FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64
           ++ + V           +   + F+ + T+ YP E     PR+RG   L R P+GEERC+
Sbjct: 4   YIGDIVKGTGTQLRSLAMVFSHGFRKRDTLQYPEEPVYLPPRYRGRIVLTRDPDGEERCV 63

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           AC LC   CP   I+++      DG      + I+  +CI+CGLC+EACP  AI   P+F
Sbjct: 64  ACNLCAVACPVGCISLQKAE-TEDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDF 122

Query: 125 EFATETRQELYYDKERLLNNG 145
           E A   RQ+L Y+KE LL +G
Sbjct: 123 EMAEFKRQDLVYEKEDLLISG 143


>gi|297625182|ref|YP_003706616.1| NADH-quinone oxidoreductase subunit I [Truepera radiovictrix DSM
           17093]
 gi|297166362|gb|ADI16073.1| NADH-quinone oxidoreductase, chain I [Truepera radiovictrix DSM
           17093]
          Length = 174

 Score =  133 bits (335), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 55/149 (36%), Positives = 77/149 (51%), Gaps = 7/149 (4%)

Query: 15  EFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP 74
           +      + L + FK   T+ YP +     PRFRG H L R+PNG E+CI C LC A CP
Sbjct: 5   DIAKGMGVTLGHLFKKPVTVRYPEQPADIKPRFRGRHHLLRHPNGLEKCIGCSLCAAACP 64

Query: 75  AQAITIESGPRCH-----DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           A AI +E+           G R    Y+I+M++CI+CG C+EACP  A+V G  FE +  
Sbjct: 65  AYAIYVEAAENDPENPTSPGERYAKIYEINMLRCIFCGFCEEACPTGAVVLGHEFELSDF 124

Query: 130 TRQELYYDKERLLNN--GDRWESEIVRNI 156
              +  Y KE +L    G +W+      +
Sbjct: 125 RYNDFVYGKEDMLVGVKGSKWQRREAEKL 153


>gi|206890889|ref|YP_002248948.1| NADH-quinone oxidoreductase, chain i subfamily, putative
           [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206742827|gb|ACI21884.1| NADH-quinone oxidoreductase, chain i subfamily, putative
           [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 187

 Score =  133 bits (335), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 54/146 (36%), Positives = 81/146 (55%), Gaps = 1/146 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPN-GEER 62
               +  +   + +    +  +  F    TI YP +K      FRG HA  R P  G+ER
Sbjct: 1   MNNLLKKILFIDLIKGLLITFKTIFTTPVTIRYPKQKRPLEDGFRGRHAFVRDPETGKER 60

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+AC  C  +CP+Q I I+       G R   +Y+ID ++CI+CG C+E CPV+AIV   
Sbjct: 61  CVACTKCAQVCPSQCIYIDYSINPETGARVLTKYEIDALRCIFCGYCEEVCPVNAIVLTE 120

Query: 123 NFEFATETRQELYYDKERLLNNGDRW 148
            FE+A+ TR+E Y++++RLL N D +
Sbjct: 121 YFEYASYTREENYFNRDRLLINWDEF 146


>gi|166712606|ref|ZP_02243813.1| NADH dehydrogenase subunit I [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 162

 Score =  133 bits (334), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 84/139 (60%), Positives = 99/139 (71%), Gaps = 1/139 (0%)

Query: 25  RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84
           +Y FK K T+ YP EK   SPRFRG HALRRYPNGEERCIACKLCEA+CPA AITI+S  
Sbjct: 25  KYTFKPKYTVLYPMEKFPQSPRFRGLHALRRYPNGEERCIACKLCEAVCPALAITIDSAK 84

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNN 144
           R  D TRRT RYDID+ KCI+CG C+E+CPVD+IVE    E+  E R E   +K +LL  
Sbjct: 85  REDD-TRRTTRYDIDLFKCIFCGFCEESCPVDSIVETHILEYHFEKRGENIINKPQLLAI 143

Query: 145 GDRWESEIVRNIVTDSPYR 163
           GDR E+EI      D+ +R
Sbjct: 144 GDRLETEIAERRAADAAFR 162


>gi|271962163|ref|YP_003336359.1| formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
           kD subunit (chain I)-like protein [Streptosporangium
           roseum DSM 43021]
 gi|270505338|gb|ACZ83616.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
           kD subunit (chain I)-like protein [Streptosporangium
           roseum DSM 43021]
          Length = 171

 Score =  133 bits (334), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 56/132 (42%), Positives = 72/132 (54%), Gaps = 5/132 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  F +     FK   T+NYP EK  T+PRF G H L R+P+G E+C+ C+LC   CPA 
Sbjct: 10  VKGFGVTFHTMFKKVETVNYPEEKKPTAPRFHGRHQLNRWPDGLEKCVGCELCAWACPAD 69

Query: 77  AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E        R   G R    Y I+ ++CI CGLC EACP  A+     +E A  +R
Sbjct: 70  AIFVEGADNTDEERFSPGERYGRTYQINYLRCILCGLCIEACPTRALTMTNEYELADSSR 129

Query: 132 QELYYDKERLLN 143
           + L Y KE LL 
Sbjct: 130 ESLIYTKEMLLA 141


>gi|320009196|gb|ADW04046.1| NADH-quinone oxidoreductase, chain I [Streptomyces flavogriseus
           ATCC 33331]
          Length = 198

 Score =  133 bits (334), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 54/136 (39%), Positives = 71/136 (52%), Gaps = 5/136 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  F +  +  FK + T  YP  +  T+PRF G H L R+P+G E+C+ C+LC   CPA 
Sbjct: 16  VAGFGVTFKAMFKKRLTEQYPETQKVTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 75

Query: 77  AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E        R   G R    Y I+  +CI CGLC EACP  A+     FE A  TR
Sbjct: 76  AIYVEGADNTDEERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTNEFELANTTR 135

Query: 132 QELYYDKERLLNNGDR 147
           + L Y K+ LL   + 
Sbjct: 136 ESLIYTKDELLAGLEE 151


>gi|325003716|ref|ZP_08124828.1| NADH dehydrogenase subunit I [Pseudonocardia sp. P1]
          Length = 179

 Score =  133 bits (334), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 50/136 (36%), Positives = 72/136 (52%), Gaps = 5/136 (3%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           + +F   F +     FK   T  YP +    +PR+ G H L R+P+G E+C+ C+LC   
Sbjct: 1   MFDFFKGFGVTFSTMFKKVVTEEYPEDFPPAAPRYHGRHQLNRHPDGLEKCVGCELCAWA 60

Query: 73  CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           CPA AI +E        R   G R    Y I+ ++CI CGLC EACP  ++     +E A
Sbjct: 61  CPADAIYVEGGDNTEEARYSPGERYGAIYQINYLRCIGCGLCIEACPTRSLTMTNFYELA 120

Query: 128 TETRQELYYDKERLLN 143
            + RQ+L Y KE+L+ 
Sbjct: 121 DDNRQDLIYTKEQLMA 136


>gi|41406193|ref|NP_959029.1| NADH dehydrogenase subunit I [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|81700783|sp|Q744Z4|NUOI1_MYCPA RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName:
           Full=NADH dehydrogenase I subunit I 1; AltName:
           Full=NDH-1 subunit I 1
 gi|41394541|gb|AAS02412.1| NuoI_1 [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 175

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 54/139 (38%), Positives = 74/139 (53%), Gaps = 6/139 (4%)

Query: 10  FLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69
           F FLK  +  F +     FK   T  YP + G  +PR+ G H L R+P+G E+CI C+LC
Sbjct: 2   FTFLK-LIAGFRVTFSAMFKKPVTEGYPEKPGPVAPRYHGRHQLNRWPDGLEKCIGCELC 60

Query: 70  EAICPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
              CPA AI +E        R   G R    Y I+ ++CI CG C EACP  A+    ++
Sbjct: 61  AWACPADAIFVESADNTEAERFSPGERYGRVYQINYLRCIGCGFCIEACPTRALTMINDY 120

Query: 125 EFATETRQELYYDKERLLN 143
           E A + R +L Y K++LL 
Sbjct: 121 EMADDNRADLIYGKDQLLA 139


>gi|119595091|gb|EAW74685.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa
           (NADH-coenzyme Q reductase), isoform CRA_a [Homo
           sapiens]
          Length = 175

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 89/129 (68%), Positives = 97/129 (75%), Gaps = 2/129 (1%)

Query: 1   MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59
           M+ +       L   E      + L Y F+   TINYPFEKG  SPRFRGEHALRRYP+G
Sbjct: 48  MKSVTDRAARTLLWTELFRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 107

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           EERCIACKLCEAICPAQAITIE+ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIV
Sbjct: 108 EERCIACKLCEAICPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 166

Query: 120 EGPNFEFAT 128
           EGPNFEF+T
Sbjct: 167 EGPNFEFST 175


>gi|297201630|ref|ZP_06919027.1| NADH-plastoquinone oxidoreductase, I subunit [Streptomyces sviceus
           ATCC 29083]
 gi|197710998|gb|EDY55032.1| NADH-plastoquinone oxidoreductase, I subunit [Streptomyces sviceus
           ATCC 29083]
          Length = 219

 Score =  132 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 53/136 (38%), Positives = 73/136 (53%), Gaps = 5/136 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  F +  +  FK + T  YP ++ +T+PRF G H L R+P+G E+C+ C+LC   CPA 
Sbjct: 22  VAGFGVTFKAMFKKRLTEQYPEQQKTTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 81

Query: 77  AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E        R   G R    Y I+  +CI CGLC EACP  A+     FE A  +R
Sbjct: 82  AIYVEGADNTDEERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTNEFELADSSR 141

Query: 132 QELYYDKERLLNNGDR 147
             L + KE+LL   + 
Sbjct: 142 ANLIFTKEQLLAGLEE 157


>gi|104782528|ref|YP_609026.1| NADH dehydrogenase subunit I [Pseudomonas entomophila L48]
 gi|123255480|sp|Q1I7Z3|NUOI_PSEE4 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|95111515|emb|CAK16235.1| NADH dehydrogenase I chain I, 2Fe-2S ferredoxin-related
           [Pseudomonas entomophila L48]
          Length = 182

 Score =  132 bits (332), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 53/141 (37%), Positives = 76/141 (53%), Gaps = 8/141 (5%)

Query: 12  FLKEFVGA-------FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64
           ++ + V           +   + F+ + T+ YP E     PR+RG   L R P+GEERC+
Sbjct: 4   YIGDIVKGTGTQLRSLVMVFSHGFRKRDTLQYPEEPVYLPPRYRGRIVLTRDPDGEERCV 63

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           AC LC   CP   I+++      DG      + I+  +CI+CGLC+EACP  AI   P+F
Sbjct: 64  ACNLCAVACPVGCISLQKAE-TEDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDF 122

Query: 125 EFATETRQELYYDKERLLNNG 145
           E A   RQ+L Y+KE LL +G
Sbjct: 123 EMAEFKRQDLVYEKEDLLISG 143


>gi|296140859|ref|YP_003648102.1| NADH-quinone oxidoreductase, chain I [Tsukamurella paurometabola
           DSM 20162]
 gi|296028993|gb|ADG79763.1| NADH-quinone oxidoreductase, chain I [Tsukamurella paurometabola
           DSM 20162]
          Length = 167

 Score =  132 bits (332), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 54/132 (40%), Positives = 71/132 (53%), Gaps = 5/132 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           +G F   LR  F    T +YP +K  T+ R+ G H L RY +G E+CI C+LC   CPA 
Sbjct: 7   LGGFGTTLRTMFSKPVTESYPEQKEPTAARYHGRHQLNRYADGLEKCIGCELCAWSCPAD 66

Query: 77  AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E        R   G R    Y I+ ++CI CGLC +ACP  A+    ++E A   R
Sbjct: 67  AIYVEGADNTDEERFSPGERYGRVYQINYLRCIGCGLCVKACPTRALTMTNDYEMADGER 126

Query: 132 QELYYDKERLLN 143
            EL YDK+ LL 
Sbjct: 127 AELIYDKDHLLA 138


>gi|209542887|ref|YP_002275116.1| NADH-quinone oxidoreductase subunit I [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209530564|gb|ACI50501.1| NADH-quinone oxidoreductase, chain I [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 170

 Score =  132 bits (332), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 48/133 (36%), Positives = 72/133 (54%), Gaps = 2/133 (1%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           + + +   +L  R+    + T+ YP  K    PR+RG   L R P+G+ERC+AC LC   
Sbjct: 1   MFDILRTLWLTFRHMTHRRVTVGYPETKPPLPPRYRGRIILSRDPDGQERCVACGLCAVA 60

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           CP   I+++   +   G      + I+  +CI+CG C+EACP  AI   P+FE +   R 
Sbjct: 61  CPVDCISLQKTEQD--GRWYPDYFRINFSRCIFCGFCEEACPTYAIQLTPDFEMSEYVRP 118

Query: 133 ELYYDKERLLNNG 145
            L Y+KE LL +G
Sbjct: 119 SLVYEKEDLLISG 131


>gi|77164629|ref|YP_343154.1| NADH dehydrogenase subunit I [Nitrosococcus oceani ATCC 19707]
 gi|254433116|ref|ZP_05046624.1| NADH-quinone oxidoreductase, chain I subfamily, putative
           [Nitrosococcus oceani AFC27]
 gi|110287763|sp|Q3JC22|NUOI1_NITOC RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName:
           Full=NADH dehydrogenase I subunit I 1; AltName:
           Full=NDH-1 subunit I 1
 gi|76882943|gb|ABA57624.1| NADH dehydrogenase subunit I [Nitrosococcus oceani ATCC 19707]
 gi|207089449|gb|EDZ66720.1| NADH-quinone oxidoreductase, chain I subfamily, putative
           [Nitrosococcus oceani AFC27]
          Length = 180

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 52/138 (37%), Positives = 72/138 (52%), Gaps = 1/138 (0%)

Query: 8   VSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACK 67
           +  + L   + + +    + F+ K TI YP E+    PR+RG   L R P+GEERC+AC 
Sbjct: 5   LKNISLGSELKSLWTVFLHLFQPKATIQYPEERPYIPPRWRGRIILSRDPDGEERCVACN 64

Query: 68  LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           LC   CP   I ++       G      + I+  +CI+CG C+EACP  AI   P+FE  
Sbjct: 65  LCAVACPVDCIALQKTED-EQGRWYPEFFRINFSRCIFCGFCEEACPTYAIQLTPDFEMG 123

Query: 128 TETRQELYYDKERLLNNG 145
              R  L Y+KE LL NG
Sbjct: 124 EYERPNLVYEKEDLLING 141


>gi|71733335|ref|YP_275286.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|257485447|ref|ZP_05639488.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|289625433|ref|ZP_06458387.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289649284|ref|ZP_06480627.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|289679207|ref|ZP_06500097.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. syringae
           FF5]
 gi|298487555|ref|ZP_07005597.1| NADH-ubiquinone oxidoreductase chain I [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|302185030|ref|ZP_07261703.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. syringae
           642]
 gi|110287765|sp|Q48H47|NUOI_PSE14 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|71553888|gb|AAZ33099.1| NADH-quinone oxidoreductase, I subunit [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|298157939|gb|EFH99017.1| NADH-ubiquinone oxidoreductase chain I [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|320323795|gb|EFW79879.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320327934|gb|EFW83939.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330866831|gb|EGH01540.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. aesculi str.
           0893_23]
 gi|330881176|gb|EGH15325.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330900634|gb|EGH32053.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. japonica
           str. M301072PT]
 gi|330954556|gb|EGH54816.1| NADH dehydrogenase subunit I [Pseudomonas syringae Cit 7]
 gi|330981363|gb|EGH79466.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. aptata str.
           DSM 50252]
 gi|330987949|gb|EGH86052.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. lachrymans
           str. M301315]
 gi|331010720|gb|EGH90776.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 182

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 53/141 (37%), Positives = 77/141 (54%), Gaps = 8/141 (5%)

Query: 12  FLKEFVGA-------FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64
           ++ + V           +   + F+ + T+ YP E+    PR+RG   L R P+GEERC+
Sbjct: 4   YIGDIVKGTGTQLRSLVMVFGHGFRKRDTLQYPEEQVYLPPRYRGRIVLTRDPDGEERCV 63

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           AC LC   CP   I+++      DG      + I+  +CI+CGLC+EACP  AI   P+F
Sbjct: 64  ACNLCAVACPVGCISLQKAE-TEDGRWYPDFFRINFSRCIFCGLCEEACPTTAIQLTPDF 122

Query: 125 EFATETRQELYYDKERLLNNG 145
           E A   RQ+L Y+KE LL +G
Sbjct: 123 EMADFKRQDLVYEKEDLLISG 143


>gi|237809387|ref|YP_002893827.1| NADH dehydrogenase subunit I [Tolumonas auensis DSM 9187]
 gi|259514790|sp|C4LB38|NUOI_TOLAT RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|237501648|gb|ACQ94241.1| NADH-quinone oxidoreductase, chain I [Tolumonas auensis DSM 9187]
          Length = 180

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 51/129 (39%), Positives = 75/129 (58%), Gaps = 1/129 (0%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           + +  +   + F+ + T+ YP EK   +PR+RG   L R P+G+ERC+AC LC   CP  
Sbjct: 14  LRSLAMVFSHSFRPRDTLCYPEEKVPLAPRYRGRIVLTRDPDGDERCVACNLCAVACPVG 73

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
            I+++   R   G      + I+  +CI+CGLC+EACP  AI   P+FE     RQ+L Y
Sbjct: 74  CISLQKAERVD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDFEMGEYRRQDLVY 132

Query: 137 DKERLLNNG 145
           +KE LL +G
Sbjct: 133 EKEDLLISG 141


>gi|206890184|ref|YP_002248752.1| NADH-ubiquinone oxidoreductase 23 kda subunit [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742122|gb|ACI21179.1| NADH-ubiquinone oxidoreductase 23 kda subunit [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 198

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/161 (34%), Positives = 85/161 (52%), Gaps = 4/161 (2%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYP-NG 59
           M+     ++ +FL E      L L+  F    TI YPFE+      FRG HAL R P   
Sbjct: 1   MK-LNEIINKIFLIEIFKGLLLTLKMLFSKPVTIQYPFERRKIHDGFRGRHALVRDPFTD 59

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           +++CI C  C  +CP++ I I+     +        Y ID  +CI+C  C EACPV A+V
Sbjct: 60  KDKCIGCMRCTTVCPSRCIYIKREKTENK--MVVTDYIIDASRCIFCAYCVEACPVCALV 117

Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDS 160
              +FE+++ TR  L ++KE+LL N D + S+  R++  + 
Sbjct: 118 LTEDFEYSSYTRNNLIFNKEQLLKNWDEFASKWTRDVYFNK 158


>gi|70731263|ref|YP_261004.1| NADH dehydrogenase subunit I [Pseudomonas fluorescens Pf-5]
 gi|110287766|sp|Q4K9S9|NUOI_PSEF5 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|68345562|gb|AAY93168.1| NADH-quinone oxidoreductase, I subunit [Pseudomonas fluorescens
           Pf-5]
          Length = 182

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 53/141 (37%), Positives = 76/141 (53%), Gaps = 8/141 (5%)

Query: 12  FLKEFVGA-------FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64
           ++ + V           +   + F+ + T+ YP E     PR+RG   L R P+GEERC+
Sbjct: 4   YIGDIVKGTGTQLRSLVMVFGHGFRKRDTLQYPEEPVYLPPRYRGRIVLTRDPDGEERCV 63

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           AC LC   CP   I+++      DG      + I+  +CI+CGLC+EACP  AI   P+F
Sbjct: 64  ACNLCAVACPVGCISLQKAE-TEDGRWYPDFFRINFSRCIFCGLCEEACPTTAIQLTPDF 122

Query: 125 EFATETRQELYYDKERLLNNG 145
           E A   RQ+L Y+KE LL +G
Sbjct: 123 EMAEFKRQDLVYEKEDLLISG 143


>gi|237800535|ref|ZP_04588996.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331023395|gb|EGI03452.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 182

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 53/141 (37%), Positives = 77/141 (54%), Gaps = 8/141 (5%)

Query: 12  FLKEFVGA-------FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64
           ++ + V           +   + F+ + T+ YP E+    PR+RG   L R P+GEERC+
Sbjct: 4   YIGDIVKGTGTQLRSMVMVFGHGFRKRDTLQYPEEQVYLPPRYRGRIVLTRDPDGEERCV 63

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           AC LC   CP   I+++      DG      + I+  +CI+CGLC+EACP  AI   P+F
Sbjct: 64  ACNLCAVACPVGCISLQKAE-TEDGRWYPDFFRINFSRCIFCGLCEEACPTTAIQLTPDF 122

Query: 125 EFATETRQELYYDKERLLNNG 145
           E A   RQ+L Y+KE LL +G
Sbjct: 123 EMADFKRQDLVYEKEDLLISG 143


>gi|260598698|ref|YP_003211269.1| NADH dehydrogenase subunit I [Cronobacter turicensis z3032]
 gi|260217875|emb|CBA32420.1| NADH-quinone oxidoreductase subunit I [Cronobacter turicensis
           z3032]
          Length = 211

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/144 (38%), Positives = 76/144 (52%), Gaps = 8/144 (5%)

Query: 9   SFLFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
             + LK+ V  F   LR       + F  + T  YP E     PR+RG   L R P+G+E
Sbjct: 30  KTMTLKDIVVGFGTQLRSIWMIGLHAFSKRETRMYPEEPVYLPPRYRGRIVLTRDPDGQE 89

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RC+AC LC   CP   I+++      DG      + I+  +CI+CG+C+EACP  AI   
Sbjct: 90  RCVACNLCAVACPVGCISLQKAE-TKDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQLT 148

Query: 122 PNFEFATETRQELYYDKERLLNNG 145
           P+FE     RQ+L Y+KE LL +G
Sbjct: 149 PDFELGEFKRQDLVYEKEDLLISG 172


>gi|301631489|ref|XP_002944830.1| PREDICTED: hypothetical protein LOC100488392 [Xenopus (Silurana)
            tropicalis]
          Length = 1458

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 69/120 (57%), Positives = 79/120 (65%), Gaps = 1/120 (0%)

Query: 3    IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
            +    +    L E      L  RY F  K T+ YP EK   SPRFRG HALRRY NGEER
Sbjct: 1160 LLIDFLKSFILWELAKGMVLTGRYAFARKVTVYYPEEKTPLSPRFRGLHALRRYDNGEER 1219

Query: 63   CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            CIACKLCEA+CPA AITIES  R   G+RRT RYDID+ KCI+CG C+E+CPVD+I    
Sbjct: 1220 CIACKLCEAVCPAMAITIESDVRAD-GSRRTTRYDIDLTKCIFCGFCEESCPVDSIKFMD 1278


>gi|28870536|ref|NP_793155.1| NADH dehydrogenase I subunit I [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213970028|ref|ZP_03398160.1| NADH dehydrogenase I, I subunit [Pseudomonas syringae pv. tomato
           T1]
 gi|301381383|ref|ZP_07229801.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. tomato
           Max13]
 gi|302062154|ref|ZP_07253695.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. tomato K40]
 gi|302130464|ref|ZP_07256454.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|81730550|sp|Q87ZQ2|NUOI_PSESM RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|28853784|gb|AAO56850.1| NADH dehydrogenase I, I subunit [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213925132|gb|EEB58695.1| NADH dehydrogenase I, I subunit [Pseudomonas syringae pv. tomato
           T1]
 gi|330875766|gb|EGH09915.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
 gi|330965585|gb|EGH65845.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. actinidiae
           str. M302091]
 gi|331017278|gb|EGH97334.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 182

 Score =  131 bits (330), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 53/141 (37%), Positives = 77/141 (54%), Gaps = 8/141 (5%)

Query: 12  FLKEFVGA-------FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64
           ++ + V           +   + F+ + T+ YP E+    PR+RG   L R P+GEERC+
Sbjct: 4   YIGDIVKGTGTQLRSMVMVFGHGFRKRDTLQYPEEQVYLPPRYRGRIVLTRDPDGEERCV 63

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           AC LC   CP   I+++      DG      + I+  +CI+CGLC+EACP  AI   P+F
Sbjct: 64  ACNLCAVACPVGCISLQKAE-TEDGRWYPDFFRINFSRCIFCGLCEEACPTTAIQLTPDF 122

Query: 125 EFATETRQELYYDKERLLNNG 145
           E A   RQ+L Y+KE LL +G
Sbjct: 123 EMADFKRQDLVYEKEDLLISG 143


>gi|296165390|ref|ZP_06847931.1| NADH-quinone oxidoreductase subunit I [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295899281|gb|EFG78746.1| NADH-quinone oxidoreductase subunit I [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 175

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 54/139 (38%), Positives = 73/139 (52%), Gaps = 6/139 (4%)

Query: 10  FLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69
           F FLK     F +     FK   T  YP + G  +PR+ G H L R+P+G E+CI C+LC
Sbjct: 2   FTFLKPIA-GFRVTFSAMFKKPVTEGYPEKPGPVAPRYHGRHQLNRWPDGLEKCIGCELC 60

Query: 70  EAICPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
              CPA AI +E        R   G R    Y I+ ++CI CG C EACP  A+    ++
Sbjct: 61  AWACPADAIFVESADNTEAERFSPGERYGRAYQINYLRCIGCGFCIEACPTRALTMINDY 120

Query: 125 EFATETRQELYYDKERLLN 143
           E A + R +L Y K++LL 
Sbjct: 121 EMADDNRADLIYGKDQLLA 139


>gi|322417691|ref|YP_004196914.1| NADH-quinone oxidoreductase subunit I [Geobacter sp. M18]
 gi|320124078|gb|ADW11638.1| NADH-quinone oxidoreductase, chain I [Geobacter sp. M18]
          Length = 176

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 49/133 (36%), Positives = 68/133 (51%), Gaps = 1/133 (0%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           +KE V    +  R+ F+   T+ YP E+     RFRG   L R P+G ERC+AC LC   
Sbjct: 7   IKEIVTGLSITFRHIFRKPVTVQYPEERRPMPERFRGSIVLTRDPDGAERCVACYLCSGA 66

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           CP   I++ +     +G R  V + I+  +CI CGLC EACP  AI              
Sbjct: 67  CPVDCISMAAAE-GENGRRYAVWFRINFSRCILCGLCAEACPTLAIQMSSEMFPCKRQVL 125

Query: 133 ELYYDKERLLNNG 145
           ++ Y+KE LL +G
Sbjct: 126 DMVYEKEDLLIDG 138


>gi|66046433|ref|YP_236274.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. syringae
           B728a]
 gi|81308095|sp|Q4ZRI6|NUOI_PSEU2 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|63257140|gb|AAY38236.1| NADH-quinone oxidoreductase, chain I [Pseudomonas syringae pv.
           syringae B728a]
 gi|330972914|gb|EGH72980.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 182

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 53/141 (37%), Positives = 77/141 (54%), Gaps = 8/141 (5%)

Query: 12  FLKEFVGA-------FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64
           ++ + V           +   + F+ + T+ YP E+    PR+RG   L R P+GEERC+
Sbjct: 4   YIGDIVKGTGTQLRSMVMVFGHGFRKRDTLQYPEEQVYLPPRYRGRIVLTRDPDGEERCV 63

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           AC LC   CP   I+++      DG      + I+  +CI+CGLC+EACP  AI   P+F
Sbjct: 64  ACNLCAVACPVGCISLQKAE-TEDGRWYPDFFRINFSRCIFCGLCEEACPTTAIQLTPDF 122

Query: 125 EFATETRQELYYDKERLLNNG 145
           E A   RQ+L Y+KE LL +G
Sbjct: 123 EMAEFKRQDLVYEKEDLLISG 143


>gi|258592355|emb|CBE68664.1| NADH-quinone oxidoreductase subunit I (NADH dehydrogenase I subunit
           I) (NDH-1 subunit I) [NC10 bacterium 'Dutch sediment']
          Length = 153

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 52/136 (38%), Positives = 75/136 (55%), Gaps = 5/136 (3%)

Query: 12  FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71
            + E +       ++ F+   T++YP E+   +PR+RG H L    +G ERC+ C+LC  
Sbjct: 1   MITEILKGMATTFKHIFRKPVTVSYPEERLPLAPRYRGLHMLVVGDDGMERCVGCELCAV 60

Query: 72  ICPAQAITIESGP-----RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
            CPA AI +E+       R   G R    Y I M++CI+CG C+EACP +AIV G  +E 
Sbjct: 61  ACPADAIYVEAAENTGQERHSKGERYAKVYKIHMLRCIFCGYCEEACPEEAIVLGKQYEL 120

Query: 127 ATETRQELYYDKERLL 142
           A+  R    Y KERL+
Sbjct: 121 ASYERGGFVYGKERLM 136


>gi|77459832|ref|YP_349339.1| NADH dehydrogenase subunit I [Pseudomonas fluorescens Pf0-1]
 gi|110287767|sp|Q3KA56|NUOI_PSEPF RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|77383835|gb|ABA75348.1| NADH dehydrogenase subunit I [Pseudomonas fluorescens Pf0-1]
          Length = 182

 Score =  131 bits (329), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 53/141 (37%), Positives = 77/141 (54%), Gaps = 8/141 (5%)

Query: 12  FLKEFVGA-------FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64
           ++ + V           +   + F+ + T+ YP E+    PR+RG   L R P+GEERC+
Sbjct: 4   YIGDIVKGTGTQLRSLVMVFGHGFRKRDTLQYPEEQVYLPPRYRGRIVLTRDPDGEERCV 63

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           AC LC   CP   I+++      DG      + I+  +CI+CGLC+EACP  AI   P+F
Sbjct: 64  ACNLCAVACPVGCISLQKAE-TEDGRWYPDFFRINFSRCIFCGLCEEACPTTAIQLTPDF 122

Query: 125 EFATETRQELYYDKERLLNNG 145
           E A   RQ+L Y+KE LL +G
Sbjct: 123 EMAEFKRQDLVYEKEDLLISG 143


>gi|330892471|gb|EGH25132.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. mori str.
           301020]
          Length = 179

 Score =  131 bits (329), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 53/141 (37%), Positives = 77/141 (54%), Gaps = 8/141 (5%)

Query: 12  FLKEFVGA-------FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64
           ++ + V           +   + F+ + T+ YP E+    PR+RG   L R P+GEERC+
Sbjct: 4   YIGDIVKGTGTQLRSLVMVFGHGFRKRDTLQYPEEQVYLPPRYRGRIVLTRDPDGEERCV 63

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           AC LC   CP   I+++      DG      + I+  +CI+CGLC+EACP  AI   P+F
Sbjct: 64  ACNLCAVACPVGCISLQKAE-TEDGRWYPDFFRINFSRCIFCGLCEEACPTTAIQLTPDF 122

Query: 125 EFATETRQELYYDKERLLNNG 145
           E A   RQ+L Y+KE LL +G
Sbjct: 123 EMADFKRQDLVYEKEDLLISG 143


>gi|282860727|ref|ZP_06269793.1| NADH-quinone oxidoreductase, chain I [Streptomyces sp. ACTE]
 gi|282564463|gb|EFB69999.1| NADH-quinone oxidoreductase, chain I [Streptomyces sp. ACTE]
          Length = 198

 Score =  131 bits (329), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 53/136 (38%), Positives = 70/136 (51%), Gaps = 5/136 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  F +  +  F+ + T  YP     T+PRF G H L R+P+G E+C+ C+LC   CPA 
Sbjct: 16  VAGFGVTFKAMFRKRLTEQYPETPKVTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 75

Query: 77  AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E        R   G R    Y I+  +CI CGLC EACP  A+    +FE A  TR
Sbjct: 76  AIYVEGADNTDEERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTNDFELANTTR 135

Query: 132 QELYYDKERLLNNGDR 147
             L Y K+ LL   + 
Sbjct: 136 ASLIYTKDELLAGLEE 151


>gi|161502534|ref|YP_001569646.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160863881|gb|ABX20504.1| hypothetical protein SARI_00578 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|323130652|gb|ADX18082.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|326628528|gb|EGE34871.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 190

 Score =  131 bits (329), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 57/152 (37%), Positives = 78/152 (51%), Gaps = 8/152 (5%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHAL 53
           M     +   + LKE +  F   +R       + F  + T  YP E     PR+RG   L
Sbjct: 1   MAGAIRDTKTMTLKELLVGFGTQVRSIWMIGLHAFAKRETRMYPEEPVYLPPRYRGRIVL 60

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
            R P+GEERC+AC LC   CP   I+++      DG      + I+  +CI+CGLC+EAC
Sbjct: 61  TRDPDGEERCVACNLCAVACPVGCISLQKAE-TKDGRWYPEFFRINFSRCIFCGLCEEAC 119

Query: 114 PVDAIVEGPNFEFATETRQELYYDKERLLNNG 145
           P  AI   P+FE     RQ+L Y+KE LL +G
Sbjct: 120 PTTAIQLTPDFELGEYKRQDLVYEKEDLLISG 151


>gi|168700377|ref|ZP_02732654.1| NADH-quinone oxidoreductase, chain I [Gemmata obscuriglobus UQM
           2246]
          Length = 188

 Score =  131 bits (329), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 49/141 (34%), Positives = 75/141 (53%), Gaps = 5/141 (3%)

Query: 11  LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70
           L++   V      L +  K K T  YP ++   +P +RG H L R   G  +C+AC +C 
Sbjct: 22  LYIPALVAGLKTTLGHMVKPKITEQYPEQEPKLTPNYRGVHRLNRDAAGRVKCVACYMCA 81

Query: 71  AICPAQAITIESGPRCHDGT-----RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
             CPA  I I + P   D       +    + ID ++CIYCG+C+EACPVDAI     ++
Sbjct: 82  TACPAHCIDIVAAPAPADWQKDGREKYPETFVIDELRCIYCGMCEEACPVDAIELTTLYD 141

Query: 126 FATETRQELYYDKERLLNNGD 146
               +R+++ +DKE+LL+  D
Sbjct: 142 LTGLSREQMVFDKEKLLSVFD 162


>gi|226944925|ref|YP_002799998.1| NADH dehydrogenase subunit I [Azotobacter vinelandii DJ]
 gi|226719852|gb|ACO79023.1| NADH-quinone oxidoreductase, chain I [Azotobacter vinelandii DJ]
          Length = 182

 Score =  131 bits (329), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 51/129 (39%), Positives = 75/129 (58%), Gaps = 1/129 (0%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           + +  +   + F+ + T+ YP E     PR+RG   L R P+GEERC+AC LC   CP  
Sbjct: 16  LRSLVMVFSHAFRKRDTLQYPEEPVYLPPRYRGRIVLTRDPDGEERCVACNLCAVACPVG 75

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
            I+++   +  DG      + I+  +CI+CGLC+EACP  AI   P+FE +   RQEL Y
Sbjct: 76  CISLQKAEK-EDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDFEMSEYKRQELVY 134

Query: 137 DKERLLNNG 145
           +K+ LL +G
Sbjct: 135 EKQDLLISG 143


>gi|229591260|ref|YP_002873379.1| NADH dehydrogenase subunit I [Pseudomonas fluorescens SBW25]
 gi|312961693|ref|ZP_07776191.1| NADH-quinone oxidoreductase, chain I [Pseudomonas fluorescens WH6]
 gi|229363126|emb|CAY50146.1| NADH Dehydrogenase I chain I [Pseudomonas fluorescens SBW25]
 gi|311283952|gb|EFQ62535.1| NADH-quinone oxidoreductase, chain I [Pseudomonas fluorescens WH6]
          Length = 182

 Score =  130 bits (328), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 53/141 (37%), Positives = 76/141 (53%), Gaps = 8/141 (5%)

Query: 12  FLKEFVGA-------FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64
           ++ + V           +   + F+ + T+ YP E     PR+RG   L R P+GEERC+
Sbjct: 4   YIGDIVKGTGTQLRSLVMVFGHGFRKRDTLQYPEEAVYLPPRYRGRIVLTRDPDGEERCV 63

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           AC LC   CP   I+++      DG      + I+  +CI+CGLC+EACP  AI   P+F
Sbjct: 64  ACNLCAVACPVGCISLQKAE-TEDGRWYPDFFRINFSRCIFCGLCEEACPTTAIQLTPDF 122

Query: 125 EFATETRQELYYDKERLLNNG 145
           E A   RQ+L Y+KE LL +G
Sbjct: 123 EMAEFKRQDLVYEKEDLLISG 143


>gi|256380657|ref|YP_003104317.1| NADH dehydrogenase subunit I [Actinosynnema mirum DSM 43827]
 gi|255924960|gb|ACU40471.1| NADH-quinone oxidoreductase, chain I [Actinosynnema mirum DSM
           43827]
          Length = 188

 Score =  130 bits (328), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 53/136 (38%), Positives = 72/136 (52%), Gaps = 5/136 (3%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           + + V  F +     FK   T  YP  K  T+PR+ G H L R+P+G E+C+ C+LC   
Sbjct: 3   MLDPVKGFGVTFSTMFKKVVTEEYPEVKKVTAPRYHGRHQLNRHPDGLEKCVGCELCAWA 62

Query: 73  CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           CPA AI +E        R   G R    Y I+ ++CI CGLC EACP  ++     FE A
Sbjct: 63  CPADAIFVEGGDNTEEARFSPGERYGADYQINYLRCIGCGLCIEACPTRSLTMTNEFELA 122

Query: 128 TETRQELYYDKERLLN 143
            + RQ+L + KE LL 
Sbjct: 123 DDDRQKLIFTKEDLLA 138


>gi|213018798|ref|ZP_03334606.1| NADH dehydrogenase I, I subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|212995749|gb|EEB56389.1| NADH dehydrogenase I, I subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 125

 Score =  130 bits (328), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 95/124 (76%), Positives = 103/124 (83%), Gaps = 1/124 (0%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           EKG  SPRFRGEHALRRYPNGEERCIACKLCE ICPAQAI IE+  R  DG+RRT RYDI
Sbjct: 2   EKGPLSPRFRGEHALRRYPNGEERCIACKLCEVICPAQAIVIEAEER-EDGSRRTTRYDI 60

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158
           DM KCIYCGLCQEACPVDAIVEGPNFEFATETR+EL Y+KE+LL NG+ WE  I   +  
Sbjct: 61  DMTKCIYCGLCQEACPVDAIVEGPNFEFATETREELMYNKEKLLRNGEVWEEAIALRLKK 120

Query: 159 DSPY 162
           + PY
Sbjct: 121 NRPY 124


>gi|300114500|ref|YP_003761075.1| NADH-quinone oxidoreductase subunit I [Nitrosococcus watsonii
           C-113]
 gi|299540437|gb|ADJ28754.1| NADH-quinone oxidoreductase, chain I [Nitrosococcus watsonii C-113]
          Length = 180

 Score =  130 bits (328), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 52/138 (37%), Positives = 72/138 (52%), Gaps = 1/138 (0%)

Query: 8   VSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACK 67
           +  L L   + + +    + F+ K TI YP E+    PR+RG   L R P+GEERC+AC 
Sbjct: 5   LKNLSLGSELKSLWTVFLHLFQPKATIQYPEERPYIPPRWRGRIILSRDPDGEERCVACN 64

Query: 68  LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           LC   CP   I ++       G      + I+  +CI+CG C+EACP  AI   P+FE  
Sbjct: 65  LCAVACPVDCIALQKTED-EQGRWYPEFFRINFSRCIFCGFCEEACPTYAIQLTPDFEMG 123

Query: 128 TETRQELYYDKERLLNNG 145
              R  L Y+KE LL +G
Sbjct: 124 EYERPNLVYEKEDLLISG 141


>gi|313679593|ref|YP_004057332.1| NADH dehydrogenase subunit i [Oceanithermus profundus DSM 14977]
 gi|313152308|gb|ADR36159.1| NADH dehydrogenase subunit I [Oceanithermus profundus DSM 14977]
          Length = 176

 Score =  130 bits (328), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 57/146 (39%), Positives = 75/146 (51%), Gaps = 7/146 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              A  + L++ F    TI YP       PRF G H L R+P+G E+CI C LC A CPA
Sbjct: 6   LAKAMGITLKHLFSKPVTIPYPSAPVPLKPRFHGRHVLTRHPDGLEKCIGCSLCAAACPA 65

Query: 76  QAITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
            AI +E      +     G R    Y+I+M++CI+CGLC+EACP  AIV G  FE A   
Sbjct: 66  YAIYVEPDENDPENPVSAGERYAKVYEINMLRCIFCGLCEEACPTGAIVLGNEFELADYV 125

Query: 131 RQELYYDKERLLN--NGDRWESEIVR 154
             +  Y KE LL    G + +    +
Sbjct: 126 YSDFVYGKEDLLVDTVGSKPQRREAQ 151


>gi|146307442|ref|YP_001187907.1| NADH dehydrogenase subunit I [Pseudomonas mendocina ymp]
 gi|145575643|gb|ABP85175.1| NADH dehydrogenase subunit I [Pseudomonas mendocina ymp]
          Length = 182

 Score =  130 bits (328), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 51/129 (39%), Positives = 73/129 (56%), Gaps = 1/129 (0%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           + +  +   + F+ + T+ YP E     PR+RG   L R P+GEERC+AC LC   CP  
Sbjct: 16  LRSLVMVFSHGFRKRDTLQYPEEPVYLPPRYRGRIVLTRDPDGEERCVACNLCAVACPVG 75

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
            I+++      DG      + I+  +CI+CGLC+EACP  AI   P+FE     RQ+L Y
Sbjct: 76  CISLQKAE-TDDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDFEMGEYKRQDLVY 134

Query: 137 DKERLLNNG 145
           +KE LL +G
Sbjct: 135 EKEDLLISG 143


>gi|134103322|ref|YP_001108983.1| NADH dehydrogenase subunit I [Saccharopolyspora erythraea NRRL
           2338]
 gi|291004459|ref|ZP_06562432.1| NADH dehydrogenase subunit I [Saccharopolyspora erythraea NRRL
           2338]
 gi|156633540|sp|A4FPT3|NUOI_SACEN RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|133915945|emb|CAM06058.1| NADH dehydrogenase (quinone) [Saccharopolyspora erythraea NRRL
           2338]
          Length = 188

 Score =  130 bits (328), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 49/132 (37%), Positives = 71/132 (53%), Gaps = 5/132 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           +  F +     F+   T  YP  K   +PRF G+H L R+P+G E+C+ C+LC   CPA 
Sbjct: 7   IKGFGVTFSTMFRKVVTEEYPEVKKIPAPRFHGKHQLNRHPDGLEKCVGCELCAWACPAD 66

Query: 77  AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E        R   G R  + Y I+ ++CI CGLC EACP  ++     +E A + R
Sbjct: 67  AIFVEGGTNTEDERYSPGERYGMDYQINYLRCIGCGLCIEACPTRSLTMTNEYETADDNR 126

Query: 132 QELYYDKERLLN 143
           ++L + KE LL 
Sbjct: 127 RDLIFTKEDLLA 138


>gi|258651224|ref|YP_003200380.1| NADH-quinone oxidoreductase, chain I [Nakamurella multipartita DSM
           44233]
 gi|258554449|gb|ACV77391.1| NADH-quinone oxidoreductase, chain I [Nakamurella multipartita DSM
           44233]
          Length = 214

 Score =  130 bits (327), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 50/136 (36%), Positives = 69/136 (50%), Gaps = 5/136 (3%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
             + V  F +     FK   T +YP      +PR+ G H L R+P+G E+C+ C+LC   
Sbjct: 3   FLDPVKGFGVTFATMFKPVVTEDYPKNPEQPAPRYHGRHQLNRHPDGLEKCVGCELCAWA 62

Query: 73  CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           CPA AI +E        R   G R    Y I+ ++CI CGLC EACP  ++     +E A
Sbjct: 63  CPADAIFVEGGDNTDEERYSPGERYGKNYQINYLRCIGCGLCIEACPTRSLTMTNEYELA 122

Query: 128 TETRQELYYDKERLLN 143
            + RQ L Y K+ LL 
Sbjct: 123 DDDRQRLIYTKDMLLA 138


>gi|330503264|ref|YP_004380133.1| NADH dehydrogenase subunit I [Pseudomonas mendocina NK-01]
 gi|328917550|gb|AEB58381.1| NADH dehydrogenase subunit I [Pseudomonas mendocina NK-01]
          Length = 182

 Score =  130 bits (327), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 51/129 (39%), Positives = 73/129 (56%), Gaps = 1/129 (0%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           + +  +   + F+ + T+ YP E     PR+RG   L R P+GEERC+AC LC   CP  
Sbjct: 16  LRSLAMVFSHGFRKRDTLQYPEEPVYLPPRYRGRIVLTRDPDGEERCVACNLCAVACPVG 75

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
            I+++      DG      + I+  +CI+CGLC+EACP  AI   P+FE     RQ+L Y
Sbjct: 76  CISLQKAE-TDDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDFEMGEFKRQDLVY 134

Query: 137 DKERLLNNG 145
           +KE LL +G
Sbjct: 135 EKEDLLISG 143


>gi|315605120|ref|ZP_07880172.1| NADH-quinone oxidoreductase subunit I [Actinomyces sp. oral taxon
           180 str. F0310]
 gi|315313227|gb|EFU61292.1| NADH-quinone oxidoreductase subunit I [Actinomyces sp. oral taxon
           180 str. F0310]
          Length = 217

 Score =  130 bits (327), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 52/131 (39%), Positives = 72/131 (54%), Gaps = 5/131 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           +  + + L  FF+   T  YP E     PRF G H L RY +G E+C+ C+LC   CPA 
Sbjct: 27  MAGYGVTLSSFFRPTVTEQYPREPARVMPRFHGRHQLNRYDDGLEKCVGCELCAWACPAD 86

Query: 77  AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E        +   G R    Y I+ ++CI+CG+C EACP  A+    +FE AT TR
Sbjct: 87  AIFVEAASNTPDEQYSAGERYGRVYQINYLRCIFCGMCIEACPTRALTMTNDFEIATYTR 146

Query: 132 QELYYDKERLL 142
           ++  Y+KE LL
Sbjct: 147 EDDIYEKEDLL 157


>gi|282891842|ref|ZP_06300322.1| hypothetical protein pah_c198o033 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281498275|gb|EFB40614.1| hypothetical protein pah_c198o033 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 157

 Score =  130 bits (327), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 52/134 (38%), Positives = 73/134 (54%), Gaps = 5/134 (3%)

Query: 15  EFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP 74
             +   F+ L++ F    TI YP EK     R RG H L ++ +G+ERC+ C+LC  +CP
Sbjct: 10  SMLRGLFIVLKHMFIKPVTIQYPEEKRKLPERSRGRHYLTKWEDGKERCVGCELCAIVCP 69

Query: 75  AQAIT-----IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           AQAI       E       G R    + I+M++CI+CG C+EACP  AIV G  +E +  
Sbjct: 70  AQAIYVKPSENEPKNEHSHGERYASDFQINMLRCIFCGYCEEACPTGAIVLGNQYELSGY 129

Query: 130 TRQELYYDKERLLN 143
           TR+ L Y K+ L  
Sbjct: 130 TRESLIYTKDMLTE 143


>gi|84494922|ref|ZP_00994041.1| NuoI, NADH dehydrogenase subunit [Janibacter sp. HTCC2649]
 gi|84384415|gb|EAQ00295.1| NuoI, NADH dehydrogenase subunit [Janibacter sp. HTCC2649]
          Length = 206

 Score =  130 bits (327), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 54/149 (36%), Positives = 73/149 (48%), Gaps = 10/149 (6%)

Query: 5   RCNVSFLFLKEFV---GAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
                  F  +     G F +     F+   T  YP  K  T+ RF G H L R+P+G E
Sbjct: 3   DEKKKAGFFSDIFAPVGGFGVTFATMFRKVATTEYPEVKRPTAQRFHGRHQLNRHPDGLE 62

Query: 62  RCIACKLCEAICPAQAITIE-------SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           +C+ C+LC   CPA AI +E       SG R   G R    Y I+ ++CI+CGLC EACP
Sbjct: 63  KCVGCELCAWACPADAILVEGANNDDASGQRFSPGERYGRVYQINYLRCIFCGLCIEACP 122

Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLN 143
             A+     +E A   R +L + KE+LL 
Sbjct: 123 TRALTMTNEYELADNNRADLIFTKEQLLA 151


>gi|257459158|ref|ZP_05624277.1| 4Fe-4S binding domain protein [Campylobacter gracilis RM3268]
 gi|257443543|gb|EEV18667.1| 4Fe-4S binding domain protein [Campylobacter gracilis RM3268]
          Length = 401

 Score =  130 bits (327), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 59/147 (40%), Positives = 79/147 (53%), Gaps = 7/147 (4%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKA--KTTINYPFEKGSTSPRFRGEHALRRY-PNGE 60
            R  ++  F  E     ++ L+  FK     T+ YP EK    PR+RG H L R   +G 
Sbjct: 20  LRRFLARTFNGELFVGLWVVLKNMFKRGGSHTLRYPMEKFVMPPRYRGVHKLMRLLESGS 79

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCI C LCE IC A  I +E+     DG ++   Y I++ +C+YCGLC + CP  AIV 
Sbjct: 80  ERCIGCGLCEKICVANCIAMETSL-GSDGRKKVDNYSINLGRCVYCGLCADVCPEIAIVH 138

Query: 121 GPNFEFATETRQELYYD-KERLLNNGD 146
           G  +E A+E R   YY  KE LL  G+
Sbjct: 139 GCEYELASEQRA--YYGFKEDLLIRGE 163


>gi|330958152|gb|EGH58412.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 174

 Score =  130 bits (326), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 53/141 (37%), Positives = 77/141 (54%), Gaps = 8/141 (5%)

Query: 12  FLKEFVGA-------FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64
           ++ + V           +   + F+ + T+ YP E+    PR+RG   L R P+GEERC+
Sbjct: 4   YIGDIVKGTGTQLRSMVMVFGHGFRKRDTLQYPEEQVYLPPRYRGRIVLTRDPDGEERCV 63

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           AC LC   CP   I+++      DG      + I+  +CI+CGLC+EACP  AI   P+F
Sbjct: 64  ACNLCAVACPVGCISLQKAE-TEDGRWYPDFFRINFSRCIFCGLCEEACPTTAIQLTPDF 122

Query: 125 EFATETRQELYYDKERLLNNG 145
           E A   RQ+L Y+KE LL +G
Sbjct: 123 EMADFKRQDLVYEKEDLLISG 143


>gi|291298806|ref|YP_003510084.1| NADH-quinone oxidoreductase subunit I [Stackebrandtia nassauensis
           DSM 44728]
 gi|290568026|gb|ADD40991.1| NADH-quinone oxidoreductase, chain I [Stackebrandtia nassauensis
           DSM 44728]
          Length = 185

 Score =  130 bits (326), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 5/132 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
             +F +   + FK + T  YP  +  T+PR+ G H L R+P+G E+C+ C+LC   CPA 
Sbjct: 5   AKSFGVTFAHMFKKQVTEKYPEVRTPTAPRYHGRHILNRHPDGLEKCVGCELCAWACPAD 64

Query: 77  AITIESGP-----RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E G      R   G R  V Y I+  +CI+CGLC EACP  ++     +E A + R
Sbjct: 65  AIFVEGGDNTDKTRYSPGERYAVDYQINYARCIFCGLCIEACPTRSLTMSNEYELAADNR 124

Query: 132 QELYYDKERLLN 143
           ++L + KE+LL 
Sbjct: 125 RDLIFTKEQLLA 136


>gi|284992917|ref|YP_003411471.1| NADH-quinone oxidoreductase, chain I [Geodermatophilus obscurus DSM
           43160]
 gi|284066162|gb|ADB77100.1| NADH-quinone oxidoreductase, chain I [Geodermatophilus obscurus DSM
           43160]
          Length = 211

 Score =  130 bits (326), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 51/136 (37%), Positives = 71/136 (52%), Gaps = 5/136 (3%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           L      F +     F+  TT  YP     T PR+ G H L R+P+G E+C+ C+LC   
Sbjct: 25  LPGPGQGFGVTFAQIFRKVTTEEYPEVPKVTKPRYHGRHVLNRHPDGLEKCVGCELCAWA 84

Query: 73  CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           CPA AI +E        R   G R    Y I+ ++CI+CGLC EACP  ++    +FE A
Sbjct: 85  CPADAIYVEGGDNTEDERYSPGERYGRVYQINYLRCIFCGLCIEACPTRSLTMSNDFELA 144

Query: 128 TETRQELYYDKERLLN 143
            + R +L Y KE+L+ 
Sbjct: 145 DDNRADLIYTKEQLMA 160


>gi|92115240|ref|YP_575168.1| NADH dehydrogenase subunit I [Chromohalobacter salexigens DSM 3043]
 gi|110287760|sp|Q1QST9|NUOI_CHRSD RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|91798330|gb|ABE60469.1| NADH dehydrogenase subunit I [Chromohalobacter salexigens DSM 3043]
          Length = 179

 Score =  130 bits (326), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 53/129 (41%), Positives = 75/129 (58%), Gaps = 1/129 (0%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           +    +   + F+ + T+ YP E    SPR+RG   L R P+GEERC+AC LC   CP  
Sbjct: 13  LRTLGMVFMHAFRKRETLQYPEEPVYLSPRYRGRIVLTRDPDGEERCVACNLCAVACPVA 72

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
            I+++ G R   G      + I+  +CI+CGLC+EACP  AI   P+FE +   RQEL Y
Sbjct: 73  CISLQKGERDD-GRWYPEFFRINFSRCIFCGLCEEACPTSAIQLTPDFEMSEYRRQELVY 131

Query: 137 DKERLLNNG 145
           +K+ LL +G
Sbjct: 132 EKDDLLISG 140


>gi|222054369|ref|YP_002536731.1| NADH-quinone oxidoreductase, chain I [Geobacter sp. FRC-32]
 gi|221563658|gb|ACM19630.1| NADH-quinone oxidoreductase, chain I [Geobacter sp. FRC-32]
          Length = 176

 Score =  129 bits (325), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 52/127 (40%), Positives = 71/127 (55%), Gaps = 1/127 (0%)

Query: 19  AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78
             +   ++ F+   TI YP EK +  PRFR    L R P+G ERC+AC LC A CP   I
Sbjct: 13  GLWTTWKHIFRKPVTIQYPEEKRTPYPRFRARIVLTRDPDGGERCVACYLCSAACPVDCI 72

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
           +++S     +G R    + I+  +CIYCGLC EACP  AI    ++EF      E+ Y+K
Sbjct: 73  SMQSVE-GPNGRRYAEWFRINFARCIYCGLCAEACPTLAIQMTTDYEFCKRDIMEMIYEK 131

Query: 139 ERLLNNG 145
           E LL +G
Sbjct: 132 EDLLIDG 138


>gi|332971171|gb|EGK10135.1| NADH-quinone oxidoreductase subunit I [Psychrobacter sp.
           1501(2011)]
          Length = 182

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/144 (37%), Positives = 79/144 (54%), Gaps = 3/144 (2%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
           +  +  V  +F    V + ++   + F+ + TI YP +     PRFRG   L R P+G+E
Sbjct: 3   KTLKNTVVGMFT--IVRSMWMVNSHAFRPRDTILYPEQPVPVPPRFRGRIVLTRDPDGDE 60

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RC+AC LC   CP   I+++   R  DG      + I+  +CI+CG+C+EACP  AI   
Sbjct: 61  RCVACNLCAVACPVACISLQKAER-EDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQLT 119

Query: 122 PNFEFATETRQELYYDKERLLNNG 145
           P+FE     RQ L Y+KE LL +G
Sbjct: 120 PDFELGEYVRQNLVYEKEHLLISG 143


>gi|329944210|ref|ZP_08292469.1| NADH-quinone oxidoreductase, chain I [Actinomyces sp. oral taxon
           170 str. F0386]
 gi|328530940|gb|EGF57796.1| NADH-quinone oxidoreductase, chain I [Actinomyces sp. oral taxon
           170 str. F0386]
          Length = 237

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 51/133 (38%), Positives = 69/133 (51%), Gaps = 6/133 (4%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  + + +   F+   T  YPFE     PR+ G H L RY +G E+CI C+LC   CPA 
Sbjct: 32  VAGYGVTISSMFRPVVTEQYPFEPPQVMPRYHGRHQLNRYDDGLEKCIGCELCAWACPAD 91

Query: 77  AIT-----IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF-EFATET 130
           AI       E G +   G R    Y I+ ++CI+CG+C EACP  A+    +F E     
Sbjct: 92  AIYVEAASNEPGAQYSPGERYGRVYQINYLRCIFCGMCIEACPTRALTMSTDFDELVGPG 151

Query: 131 RQELYYDKERLLN 143
           R+ L Y+KE LL 
Sbjct: 152 REGLIYEKEDLLA 164


>gi|330810470|ref|YP_004354932.1| NADH-quinone oxidoreductase subunit I [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|75527983|sp|Q8RQ74|NUOI_PSEFL RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|19483810|gb|AAL89571.1| NADH dehydrogenase I subunit I [Pseudomonas fluorescens]
 gi|327378578|gb|AEA69928.1| NADH-quinone oxidoreductase subunit I [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 182

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 55/141 (39%), Positives = 78/141 (55%), Gaps = 8/141 (5%)

Query: 12  FLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64
           ++ + V      LR       + F+ + T+ YP E    +PR+RG   L R P+GEERC+
Sbjct: 4   YIGDIVKGTGTQLRSLVMIFGHGFRKRDTLQYPEEPVYLAPRYRGRIVLTRDPDGEERCV 63

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           AC LC   CP   I+++      DG      + I+  +CI+CGLC+EACP  AI   P+F
Sbjct: 64  ACNLCAVACPVGCISLQKAE-TEDGRWYPDFFRINFSRCIFCGLCEEACPTTAIQLTPDF 122

Query: 125 EFATETRQELYYDKERLLNNG 145
           E A   RQ+L Y+KE LL +G
Sbjct: 123 EMAEFKRQDLVYEKEDLLISG 143


>gi|148653489|ref|YP_001280582.1| NADH dehydrogenase subunit I [Psychrobacter sp. PRwf-1]
 gi|148572573|gb|ABQ94632.1| NADH-quinone oxidoreductase, chain I [Psychrobacter sp. PRwf-1]
          Length = 182

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/144 (37%), Positives = 79/144 (54%), Gaps = 3/144 (2%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
           +  +  V  +F    V + ++   + F+ + TI YP +     PRFRG   L R P+G+E
Sbjct: 3   KTLKNTVVGMFT--IVRSMWMVNSHAFRPRDTILYPEQPVPVPPRFRGRIVLTRDPDGDE 60

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RC+AC LC   CP   I+++   R  DG      + I+  +CI+CG+C+EACP  AI   
Sbjct: 61  RCVACNLCAVACPVACISLQKAER-EDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQLT 119

Query: 122 PNFEFATETRQELYYDKERLLNNG 145
           P+FE     RQ L Y+KE LL +G
Sbjct: 120 PDFELGEYVRQNLVYEKEHLLISG 143


>gi|294056104|ref|YP_003549762.1| NADH-quinone oxidoreductase, chain I [Coraliomargarita akajimensis
           DSM 45221]
 gi|293615437|gb|ADE55592.1| NADH-quinone oxidoreductase, chain I [Coraliomargarita akajimensis
           DSM 45221]
          Length = 183

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 49/141 (34%), Positives = 73/141 (51%), Gaps = 7/141 (4%)

Query: 12  FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71
           FL +        L   FK   T+ YP E+      +RG   L + PNG E+C++C+LCE 
Sbjct: 19  FLPQIATGLKTTLGQMFKKSVTLQYPDERPVIPDNYRGVPTLVKDPNGREKCVSCQLCEF 78

Query: 72  ICPAQAITI-------ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           +CP +AI I       E  P      +    ++I+M++CIYCG CQE CP +AI     F
Sbjct: 79  VCPPKAIRITPGEIDAEEEPDRAHVEKAPKEFEINMLRCIYCGFCQEVCPEEAIFLQDIF 138

Query: 125 EFATETRQELYYDKERLLNNG 145
             +  +R+E+  DK++L   G
Sbjct: 139 SLSGYSREEMVNDKKKLYELG 159


>gi|326329618|ref|ZP_08195940.1| NADH-quinone oxidoreductase, I subunit [Nocardioidaceae bacterium
           Broad-1]
 gi|325952614|gb|EGD44632.1| NADH-quinone oxidoreductase, I subunit [Nocardioidaceae bacterium
           Broad-1]
          Length = 179

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 52/140 (37%), Positives = 71/140 (50%), Gaps = 5/140 (3%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
             + V  F +     FK   T  YP +K  T  RF G H L R+P+G E+C+ C+LC   
Sbjct: 12  FWDPVSGFAVTFGTQFKKPVTEQYPQQKEPTEERFHGRHQLNRHPDGLEKCVGCELCAWA 71

Query: 73  CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           CPA AI +E        R   G R    Y I+ ++CI CGLC EACP  A+     +E A
Sbjct: 72  CPADAIYVEGAENTEEERYSPGERYGRVYQINYLRCILCGLCIEACPTRALTMTNEYELA 131

Query: 128 TETRQELYYDKERLLNNGDR 147
             +R+ L Y+K+ LL   + 
Sbjct: 132 DTSRESLIYEKQDLLAPLED 151


>gi|320160247|ref|YP_004173471.1| NADH-quinone oxidoreductase subunit I [Anaerolinea thermophila
           UNI-1]
 gi|319994100|dbj|BAJ62871.1| NADH-quinone oxidoreductase chain I [Anaerolinea thermophila UNI-1]
          Length = 163

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/133 (41%), Positives = 73/133 (54%), Gaps = 5/133 (3%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                   L+ +     TI YP EK     RF+G H L+RY NG E+CI C LC A CPA
Sbjct: 1   MFKGLLTTLKEWTGKPVTIQYPEEKRPVRTRFKGRHVLKRYENGLEKCIGCSLCAAACPA 60

Query: 76  QAITIES-----GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
            AI +E+       R   G R    Y+I+M++CI+CG C++ACP +AIV G N+E +   
Sbjct: 61  DAIFVEAAENTDDERYSPGERYARVYEINMLRCIFCGFCEDACPTEAIVLGDNYELSFTD 120

Query: 131 RQELYYDKERLLN 143
           R +  Y KE LL 
Sbjct: 121 RHQSIYTKEMLLE 133


>gi|256371188|ref|YP_003109012.1| NADH-quinone oxidoreductase, chain I [Acidimicrobium ferrooxidans
           DSM 10331]
 gi|256007772|gb|ACU53339.1| NADH-quinone oxidoreductase, chain I [Acidimicrobium ferrooxidans
           DSM 10331]
          Length = 229

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 55/137 (40%), Positives = 76/137 (55%), Gaps = 5/137 (3%)

Query: 15  EFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP 74
           + +G F L LR  F+ + T+ YP EK    PRF G H L RYP+G E+CI C+LC   CP
Sbjct: 7   DALGGFRLTLRQVFEPRVTLQYPEEKRPKPPRFHGRHVLNRYPDGMEKCIGCELCAGACP 66

Query: 75  AQAIT-----IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           A+ I       +       G R    Y+I+ ++CI+C LC EACP +AI E   FEFA  
Sbjct: 67  ARCIYVRGANNDPERPTSPGERFGFVYEINYLRCIHCDLCVEACPTEAITESKMFEFAFT 126

Query: 130 TRQELYYDKERLLNNGD 146
            R++  Y K  L+ + +
Sbjct: 127 NREDAIYTKAELVVDDE 143


>gi|326772143|ref|ZP_08231428.1| NADH-quinone oxidoreductase, I subunit [Actinomyces viscosus C505]
 gi|326638276|gb|EGE39177.1| NADH-quinone oxidoreductase, I subunit [Actinomyces viscosus C505]
          Length = 236

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/133 (38%), Positives = 69/133 (51%), Gaps = 6/133 (4%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  + + +   F+   T  YPFE     PR+ G H L RY +G E+CI C+LC   CPA 
Sbjct: 31  VAGYGVTISSMFRPVVTEQYPFEPPQVMPRYHGRHQLNRYDDGLEKCIGCELCAWACPAD 90

Query: 77  AIT-----IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF-EFATET 130
           AI       E G +   G R    Y I+ ++CI+CG+C EACP  A+    +F E     
Sbjct: 91  AIYVEAASNEPGAQYSPGERYGRVYQINYLRCIFCGMCIEACPTRALTMSTDFDELVGPG 150

Query: 131 RQELYYDKERLLN 143
           R+ L Y+KE LL 
Sbjct: 151 REGLIYEKEDLLA 163


>gi|226355367|ref|YP_002785107.1| NADH dehydrogenase (quinone) subunit I [Deinococcus deserti VCD115]
 gi|259514770|sp|C1D0H9|NUOI_DEIDV RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|226317357|gb|ACO45353.1| putative NADH dehydrogenase (quinone), subunit I (NADH-quinone
           oxidoreductase, subunit I) [Deinococcus deserti VCD115]
          Length = 179

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 60/157 (38%), Positives = 80/157 (50%), Gaps = 10/157 (6%)

Query: 15  EFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEERCIACKLCEAIC 73
           E      L L   F+   T++YP E+ +  PRFRG H L R    G E+CI C LC A C
Sbjct: 5   EIAKGMGLTLGKLFQKPVTVSYPEERATLKPRFRGRHVLTRHPGTGLEKCIGCSLCAAAC 64

Query: 74  PAQAITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
           PA AI +E+G          G R    Y+I+M++CI+CG+C+EACP  A+V G  FE A 
Sbjct: 65  PAYAIYVEAGENDPHDPVSPGERYAKVYEINMLRCIFCGMCEEACPTGAVVLGNEFEMAD 124

Query: 129 ETRQELYYDKERLLNN--GDRWESEIVRNIVTDSPYR 163
               ++ Y KE +L    G R +     N     P R
Sbjct: 125 YRYNDIIYGKEDMLVGVEGSRAQRRDAAN--AGKPVR 159


>gi|284009327|emb|CBA76492.1| NADH-quinone oxidoreductase chain I [Arsenophonus nasoniae]
          Length = 180

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/142 (37%), Positives = 76/142 (53%), Gaps = 8/142 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LKE V      +R       + F  + T  YP E     PR+RG   L R P+G+ERC
Sbjct: 1   MTLKELVVGLATQIRSICMIGLHAFHKRETKMYPEEPVYLPPRYRGRIVLTRDPDGQERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC  +CP   I+++   +   G      + I+  +CI+CGLC+EACP  AI   P+
Sbjct: 61  VACNLCAVVCPVGCISLQKAEQPD-GRWYPEFFQINFSRCIFCGLCEEACPTTAIQLTPD 119

Query: 124 FEFATETRQELYYDKERLLNNG 145
           FE     RQ+L Y+K+ LL +G
Sbjct: 120 FEMGEYQRQDLVYEKQDLLISG 141


>gi|325067546|ref|ZP_08126219.1| NADH-quinone oxidoreductase, chain I [Actinomyces oris K20]
          Length = 235

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/133 (38%), Positives = 69/133 (51%), Gaps = 6/133 (4%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  + + +   F+   T  YPFE     PR+ G H L RY +G E+CI C+LC   CPA 
Sbjct: 31  VAGYGVTISSMFRPVVTEQYPFEPPQVMPRYHGRHQLNRYDDGLEKCIGCELCAWACPAD 90

Query: 77  AIT-----IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF-EFATET 130
           AI       E G +   G R    Y I+ ++CI+CG+C EACP  A+    +F E     
Sbjct: 91  AIYVEAASNEPGAQYSPGERYGRVYQINYLRCIFCGMCIEACPTRALTMSTDFDELVGPG 150

Query: 131 RQELYYDKERLLN 143
           R+ L Y+KE LL 
Sbjct: 151 REGLIYEKEDLLA 163


>gi|320095557|ref|ZP_08027220.1| NADH-quinone oxidoreductase subunit I [Actinomyces sp. oral taxon
           178 str. F0338]
 gi|319977465|gb|EFW09145.1| NADH-quinone oxidoreductase subunit I [Actinomyces sp. oral taxon
           178 str. F0338]
          Length = 219

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 50/131 (38%), Positives = 71/131 (54%), Gaps = 5/131 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           +  + + L  FF+   T  YP E+    PRF G H L RY +G E+C+ C+LC   CPA 
Sbjct: 29  MAGYGVTLSSFFRPTVTEQYPREEARVMPRFHGRHQLNRYADGLEKCVGCELCAWACPAD 88

Query: 77  AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E        +   G R    Y+I+ ++CI+CG+C EACP  A+     FE A  TR
Sbjct: 89  AIFVEAASNTPDEQYSAGERYGRVYEINYLRCIFCGMCIEACPTRALTMTNEFELAEYTR 148

Query: 132 QELYYDKERLL 142
           ++  Y K+ LL
Sbjct: 149 EDDIYVKDDLL 159


>gi|320353966|ref|YP_004195305.1| NADH-quinone oxidoreductase subunit I [Desulfobulbus propionicus
           DSM 2032]
 gi|320122468|gb|ADW18014.1| NADH-quinone oxidoreductase, chain I [Desulfobulbus propionicus DSM
           2032]
          Length = 212

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 57/152 (37%), Positives = 84/152 (55%), Gaps = 2/152 (1%)

Query: 8   VSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG-EERCIAC 66
           ++ +F  E +    L L+  F    T  YP EK    P FRG+HAL R P   + +CI C
Sbjct: 12  LATIFQAEILQGMTLTLKRLFSKPITRQYPEEKPRIRPGFRGQHALVRDPETKDCKCIGC 71

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTV-RYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
             C  +CP++ I I S      G+RR +  Y I+ ++C+YCG C+E CPV+AIV    FE
Sbjct: 72  MRCAMVCPSRCIRIRSHKDKEPGSRRIIDCYRIESLRCVYCGYCEEVCPVNAIVLTEVFE 131

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIV 157
           + +  R  LY+ +E+LL N DR+ +E    + 
Sbjct: 132 YGSYERPSLYFTREQLLANWDRFVAEKGAEME 163


>gi|159899734|ref|YP_001545981.1| NADH-quinone oxidoreductase subunit I [Herpetosiphon aurantiacus
           ATCC 23779]
 gi|159892773|gb|ABX05853.1| NADH-quinone oxidoreductase, chain I [Herpetosiphon aurantiacus
           ATCC 23779]
          Length = 168

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 53/137 (38%), Positives = 72/137 (52%), Gaps = 5/137 (3%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
           +        +Y FK   T+ YP  K     RFRG H L+R+ NG ERCI C LC A CPA
Sbjct: 8   YFKGLKTTAKYLFKKPVTVEYPEVKRPVRERFRGRHELKRFANGLERCIGCSLCAAACPA 67

Query: 76  QAITIESGPRCH-----DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
            AI +  G          G R    Y+I+M++CI+CG C++ACP +AIV    +E A   
Sbjct: 68  DAIYVVPGQNDPANPRSAGERHAAVYEINMLRCIFCGYCEDACPTNAIVLEHQYELAFYD 127

Query: 131 RQELYYDKERLLNNGDR 147
           R+   Y ++ LL   D+
Sbjct: 128 RRASIYTQDMLLVAVDK 144


>gi|257453974|ref|ZP_05619250.1| NADH-quinone oxidoreductase subunit i [Enhydrobacter aerosaccus
           SK60]
 gi|257448639|gb|EEV23606.1| NADH-quinone oxidoreductase subunit i [Enhydrobacter aerosaccus
           SK60]
          Length = 183

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 50/133 (37%), Positives = 71/133 (53%), Gaps = 1/133 (0%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
               +    +   +  + + TI YP +     PRFRG   L R P+G+ERC+AC LC   
Sbjct: 13  FGSILRTLIMVASHATRKRDTILYPEQPVPVPPRFRGRIVLTRDPDGDERCVACNLCAVA 72

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           CP   I+++   R  DG      + I+  +CI+CG+C+EACP  AI   P+FE     RQ
Sbjct: 73  CPVGCISLQKAER-EDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQMTPDFELGEYNRQ 131

Query: 133 ELYYDKERLLNNG 145
            L Y+KE LL +G
Sbjct: 132 NLVYEKEHLLISG 144


>gi|304398209|ref|ZP_07380083.1| NADH-quinone oxidoreductase, chain I [Pantoea sp. aB]
 gi|308187597|ref|YP_003931728.1| NADH dehydrogenase I chain I [Pantoea vagans C9-1]
 gi|304354075|gb|EFM18448.1| NADH-quinone oxidoreductase, chain I [Pantoea sp. aB]
 gi|308058107|gb|ADO10279.1| NADH dehydrogenase I chain I [Pantoea vagans C9-1]
          Length = 180

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 53/142 (37%), Positives = 76/142 (53%), Gaps = 8/142 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LK+ V  F   +R       + F  + T  YP E     PR+RG   L R P+G+ERC
Sbjct: 1   MTLKDIVVGFGTTVRSIWLIGLHAFAKRETQMYPEEPVYLPPRYRGRIVLTRDPDGQERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC   CP   I+++      DG      + I+  +CI+CG+C+EACP  AI   P+
Sbjct: 61  VACNLCAVACPVGCISLQKAE-TKDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQLTPD 119

Query: 124 FEFATETRQELYYDKERLLNNG 145
           FE     RQ+L Y+K+ LL +G
Sbjct: 120 FELGEFKRQDLVYEKDDLLISG 141


>gi|332296568|ref|YP_004438491.1| NAD(P)H-quinone oxidoreductase subunit I [Thermodesulfobium
           narugense DSM 14796]
 gi|332179671|gb|AEE15360.1| NAD(P)H-quinone oxidoreductase subunit I [Thermodesulfobium
           narugense DSM 14796]
          Length = 192

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 53/149 (35%), Positives = 79/149 (53%), Gaps = 3/149 (2%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG- 59
           M+I +  +  + L E+     +  R   K   T  YP  K    P FRG  AL R P+  
Sbjct: 1   MKI-QKLIRDVLLVEWFRGLSVTFRTMLKKPVTRLYPHVKRQPFPGFRGRQALVRDPDKL 59

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           +ERCI C  C+ +CP+  I +E G    +  R    Y ID  +CIYCG C E CPV+A+V
Sbjct: 60  KERCIMCLRCKTVCPSNCIKVEVGKD-ENNARVLKEYSIDATRCIYCGYCVEVCPVNALV 118

Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRW 148
               +E+  + R +L ++K++LL+N D +
Sbjct: 119 LTEEYEYLGDKRSDLLFNKDKLLSNWDDF 147


>gi|158958055|sp|Q6MDQ8|NUOI_PARUW RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
          Length = 157

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 50/133 (37%), Positives = 74/133 (55%), Gaps = 5/133 (3%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +    + L++ F+   T+ YP EK     R RG H L ++ +G ERC+ C+LC  +CPA
Sbjct: 11  MMKGLIIVLKHAFQTPVTLRYPEEKRILPARSRGRHYLTKWNDGLERCVGCELCAIVCPA 70

Query: 76  QAIT-----IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
           QAI       E G     G R    + I+M++CI+CG C+EACP  AIV    +E +  T
Sbjct: 71  QAIYVKPAANEPGHIHSHGERYASDFQINMLRCIFCGYCEEACPTGAIVLSNQYELSAYT 130

Query: 131 RQELYYDKERLLN 143
           R+++ Y K+RL  
Sbjct: 131 REDMIYTKDRLTE 143


>gi|218295768|ref|ZP_03496564.1| NADH-quinone oxidoreductase, chain I [Thermus aquaticus Y51MC23]
 gi|218243927|gb|EED10454.1| NADH-quinone oxidoreductase, chain I [Thermus aquaticus Y51MC23]
          Length = 182

 Score =  127 bits (320), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 60/151 (39%), Positives = 81/151 (53%), Gaps = 7/151 (4%)

Query: 11  LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70
           + LK    +  + L+Y F    T+ YP    +  PRF G H L R+PNG E+CI C LC 
Sbjct: 1   MTLKALAQSLGITLKYLFSKPVTVPYPDAPVALKPRFHGRHVLTRHPNGLEKCIGCSLCA 60

Query: 71  AICPAQAITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           A CPA AI +E      +     G R    Y+I+M++CI+CGLC+EACP  AIV G +FE
Sbjct: 61  AACPAYAIYVEPAENDPENPVSAGERYAKVYEINMLRCIFCGLCEEACPTGAIVLGYDFE 120

Query: 126 FATETRQELYYDKERLL--NNGDRWESEIVR 154
            A     +L Y KE +L    G + +    R
Sbjct: 121 MADYQYSDLIYGKEDMLVDVVGTKPQRREAR 151


>gi|218200865|gb|EEC83292.1| hypothetical protein OsI_28652 [Oryza sativa Indica Group]
          Length = 673

 Score =  127 bits (320), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 66/109 (60%), Positives = 75/109 (68%), Gaps = 1/109 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
                  L E V    L  RY F+ K T+ +P EK   SPRFRG HALRRY NGEERCIA
Sbjct: 341 DFFKSFMLVELVKGMALTGRYAFRRKVTVQFPEEKTPLSPRFRGLHALRRYENGEERCIA 400

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           CKLCEA+CPA AITIES  R   G+RRT RYDID+ KCI+CG C+E+CP
Sbjct: 401 CKLCEAVCPALAITIESDVRAD-GSRRTTRYDIDLTKCIFCGFCEESCP 448


>gi|326561163|gb|EGE11528.1| NADH dehydrogenase subunit I [Moraxella catarrhalis 7169]
 gi|326561574|gb|EGE11915.1| NADH dehydrogenase subunit I [Moraxella catarrhalis 46P47B1]
 gi|326567649|gb|EGE17757.1| NADH dehydrogenase subunit I [Moraxella catarrhalis 12P80B1]
 gi|326567948|gb|EGE18045.1| NADH dehydrogenase subunit I [Moraxella catarrhalis BC1]
 gi|326569471|gb|EGE19531.1| NADH dehydrogenase subunit I [Moraxella catarrhalis BC8]
 gi|326572766|gb|EGE22752.1| NADH dehydrogenase subunit I [Moraxella catarrhalis BC7]
 gi|326574014|gb|EGE23963.1| NADH dehydrogenase subunit I [Moraxella catarrhalis CO72]
 gi|326577456|gb|EGE27340.1| NADH dehydrogenase subunit I [Moraxella catarrhalis O35E]
          Length = 182

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 50/133 (37%), Positives = 74/133 (55%), Gaps = 1/133 (0%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           +   V + ++   +  + + TI YP +     PRFRG   L R P+G+ERC+AC LC   
Sbjct: 12  MFTIVRSMWMVNSHALRPRDTILYPEQPVPVPPRFRGRIVLTRDPDGDERCVACNLCAVA 71

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           CP   I+++   R  DG      + I+  +C++CG+C+EACP  AI   P+FE     RQ
Sbjct: 72  CPVGCISLQKAER-EDGRWYPEFFRINFSRCVFCGMCEEACPTTAIQLTPDFELGEYDRQ 130

Query: 133 ELYYDKERLLNNG 145
            L Y+KE LL +G
Sbjct: 131 NLVYEKEHLLISG 143


>gi|46200214|ref|YP_005881.1| NADH-quinone oxidoreductase chain I [Thermus thermophilus HB27]
 gi|55980061|ref|YP_143358.1| NADH-quinone oxidoreductase subunit 9 [Thermus thermophilus HB8]
 gi|2499326|sp|Q56224|NQO9_THET8 RecName: Full=NADH-quinone oxidoreductase subunit 9; AltName:
           Full=NADH dehydrogenase I subunit 9; AltName: Full=NDH-1
           subunit 9
 gi|81405222|sp|Q72GD6|NUOI_THET2 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|90109660|pdb|2FUG|9 Chain 9, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus
 gi|90109668|pdb|2FUG|G Chain G, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus
 gi|90109676|pdb|2FUG|P Chain P, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus
 gi|90109684|pdb|2FUG|Y Chain Y, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus
 gi|258588594|pdb|3I9V|9 Chain 9, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
 gi|258588602|pdb|3I9V|G Chain G, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
 gi|258588610|pdb|3IAM|9 Chain 9, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
           With Bound Nadh
 gi|258588618|pdb|3IAM|G Chain G, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
           With Bound Nadh
 gi|258588626|pdb|3IAS|9 Chain 9, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
           Re-Refined To 3.15 Angstrom Resolution
 gi|258588634|pdb|3IAS|G Chain G, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
           Re-Refined To 3.15 Angstrom Resolution
 gi|258588642|pdb|3IAS|P Chain P, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
           Re-Refined To 3.15 Angstrom Resolution
 gi|258588650|pdb|3IAS|Y Chain Y, Crystal Structure Of The Hydrophilic Domain Of Respiratory
           Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
           Re-Refined To 3.15 Angstrom Resolution
 gi|296863610|pdb|3M9S|9 Chain 9, Crystal Structure Of Respiratory Complex I From Thermus
           Thermophilus
 gi|296863623|pdb|3M9S|G Chain G, Crystal Structure Of Respiratory Complex I From Thermus
           Thermophilus
 gi|1279869|gb|AAA97946.1| NADH dehydrogenase I, subunit NQO9 [Thermus thermophilus]
 gi|46197842|gb|AAS82254.1| NADH-quinone oxidoreductase chain I [Thermus thermophilus HB27]
 gi|55771474|dbj|BAD69915.1| NADH-quinone oxidoreductase chain 9 [Thermus thermophilus HB8]
          Length = 182

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 59/152 (38%), Positives = 81/152 (53%), Gaps = 7/152 (4%)

Query: 11  LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70
           + LK    +  + L+Y F    T+ YP    +  PRF G H L R+PNG E+CI C LC 
Sbjct: 1   MTLKALAQSLGITLKYLFSKPVTVPYPDAPVALKPRFHGRHVLTRHPNGLEKCIGCSLCA 60

Query: 71  AICPAQAITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           A CPA AI +E      +     G R    Y+I+M++CI+CGLC+EACP  AIV G +FE
Sbjct: 61  AACPAYAIYVEPAENDPENPVSAGERYAKVYEINMLRCIFCGLCEEACPTGAIVLGYDFE 120

Query: 126 FATETRQELYYDKERLL--NNGDRWESEIVRN 155
            A     +L Y KE +L    G + +    + 
Sbjct: 121 MADYEYSDLVYGKEDMLVDVVGTKPQRREAKR 152


>gi|149374620|ref|ZP_01892394.1| NADH-quinone oxidoreductase, chain I [Marinobacter algicola DG893]
 gi|149361323|gb|EDM49773.1| NADH-quinone oxidoreductase, chain I [Marinobacter algicola DG893]
          Length = 182

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 52/129 (40%), Positives = 76/129 (58%), Gaps = 1/129 (0%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           +    +   + F+ + T+NYP ++    PR+RG   L R P+GEERC+AC LC   CP  
Sbjct: 16  LRTLGMVFMHSFRKRETVNYPEQQVYLPPRYRGRIVLTRDPDGEERCVACNLCAVACPVD 75

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
            I+++ G +  DG      + I+  +CI+CG+C+EACP  AI   P+FE     RQ+L Y
Sbjct: 76  CISLQKGEQ-EDGRWYPEFFRINFSRCIFCGMCEEACPTSAIQLTPDFEMGEYDRQQLVY 134

Query: 137 DKERLLNNG 145
           +KE LL NG
Sbjct: 135 EKEDLLING 143


>gi|291618182|ref|YP_003520924.1| NuoI [Pantoea ananatis LMG 20103]
 gi|291153212|gb|ADD77796.1| NuoI [Pantoea ananatis LMG 20103]
 gi|327394575|dbj|BAK11997.1| NADH-quinone oxidoreductase chain I NuoI [Pantoea ananatis AJ13355]
          Length = 180

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 54/142 (38%), Positives = 75/142 (52%), Gaps = 8/142 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LK+ V  F   +R       + F  + T  YP E     PR+RG   L R P+G ERC
Sbjct: 1   MTLKDIVVGFGTTVRSIWMIGMHAFAKRETQMYPEEPVYLPPRYRGRIVLTRDPDGAERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC   CP   I+++      DG      + I+  +CI+CGLC+EACP  AI   P+
Sbjct: 61  VACNLCAVACPVGCISLQKAE-TKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119

Query: 124 FEFATETRQELYYDKERLLNNG 145
           FE     RQ+L Y+K+ LL +G
Sbjct: 120 FELGEFKRQDLVYEKDDLLISG 141


>gi|188533354|ref|YP_001907151.1| NADH dehydrogenase subunit I [Erwinia tasmaniensis Et1/99]
 gi|259907934|ref|YP_002648290.1| NADH dehydrogenase subunit I [Erwinia pyrifoliae Ep1/96]
 gi|292488836|ref|YP_003531723.1| NADH dehydrogenase I subunit I [Erwinia amylovora CFBP1430]
 gi|292899987|ref|YP_003539356.1| NADH dehydrogenase I chain I [Erwinia amylovora ATCC 49946]
 gi|226737392|sp|B2VIN2|NUOI_ERWT9 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|188028396|emb|CAO96257.1| NADH dehydrogenase I subunit I [Erwinia tasmaniensis Et1/99]
 gi|224963556|emb|CAX55046.1| NADH dehydrogenase I subunit I [Erwinia pyrifoliae Ep1/96]
 gi|283477815|emb|CAY73731.1| NADH dehydrogenase I chain I [Erwinia pyrifoliae DSM 12163]
 gi|291199835|emb|CBJ46959.1| NADH dehydrogenase I chain I [Erwinia amylovora ATCC 49946]
 gi|291554270|emb|CBA21585.1| NADH dehydrogenase I chain I [Erwinia amylovora CFBP1430]
 gi|310768158|gb|ADP13108.1| NADH dehydrogenase subunit I [Erwinia sp. Ejp617]
 gi|312172996|emb|CBX81251.1| NADH dehydrogenase I chain I [Erwinia amylovora ATCC BAA-2158]
          Length = 180

 Score =  127 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 54/142 (38%), Positives = 75/142 (52%), Gaps = 8/142 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LK+ V  F   +R         F  + T+ YP E     PR+RG   L R P+G+ERC
Sbjct: 1   MTLKDIVVGFGTTVRSIWLIGMNAFAKRETLMYPEEPVYLPPRYRGRIVLTRDPDGQERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC   CP   I+++       G      + I+  +CI+CGLC+EACP  AI   P+
Sbjct: 61  VACNLCAVACPVGCISLQKAETAD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119

Query: 124 FEFATETRQELYYDKERLLNNG 145
           FE     RQ+L Y+KE LL +G
Sbjct: 120 FELGEFKRQDLVYEKENLLISG 141


>gi|261340669|ref|ZP_05968527.1| NADH-quinone oxidoreductase subunit I [Enterobacter cancerogenus
           ATCC 35316]
 gi|296103962|ref|YP_003614108.1| NADH dehydrogenase subunit I [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|288317083|gb|EFC56021.1| NADH-quinone oxidoreductase subunit I [Enterobacter cancerogenus
           ATCC 35316]
 gi|295058421|gb|ADF63159.1| NADH dehydrogenase subunit I [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295098080|emb|CBK87170.1| NADH dehydrogenase subunit I [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 180

 Score =  127 bits (319), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 54/142 (38%), Positives = 74/142 (52%), Gaps = 8/142 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LKE +  F   +R       + F  + T  YP E     PR+RG   L R P+G ERC
Sbjct: 1   MTLKELLVGFGTQVRSIWMIGLHAFAKRETRMYPEEPVYLPPRYRGRIVLTRDPDGSERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC   CP   I+++       G      + I+  +CI+CGLC+EACP  AI   P+
Sbjct: 61  VACNLCAVACPVGCISLQKAETVD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119

Query: 124 FEFATETRQELYYDKERLLNNG 145
           FE     RQ+L Y+KE LL +G
Sbjct: 120 FELGEYKRQDLVYEKEDLLISG 141


>gi|293191758|ref|ZP_06609282.1| NADH-quinone oxidoreductase subunit I [Actinomyces odontolyticus
           F0309]
 gi|292820451|gb|EFF79434.1| NADH-quinone oxidoreductase subunit I [Actinomyces odontolyticus
           F0309]
          Length = 216

 Score =  127 bits (319), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 50/131 (38%), Positives = 71/131 (54%), Gaps = 5/131 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           +  + + +  FF+   T  YP E     PRF G H L RY +G E+C+ C+LC   CPA 
Sbjct: 27  MAGYGVTMASFFRPTVTEQYPREPARVMPRFHGRHQLNRYDDGLEKCVGCELCAWACPAD 86

Query: 77  AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E        +   G R    Y I+ ++CI+CG+C EACP  A+    +FE A  TR
Sbjct: 87  AIFVEAASNTPEEQYSAGERYGRVYQINYLRCIFCGMCIEACPTRALTMTNDFEIAKYTR 146

Query: 132 QELYYDKERLL 142
           ++  Y+KE LL
Sbjct: 147 EDDIYEKEDLL 157


>gi|94985024|ref|YP_604388.1| NADH-quinone oxidoreductase, chain I [Deinococcus geothermalis DSM
           11300]
 gi|115502526|sp|Q1IZW5|NUOI_DEIGD RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|94555305|gb|ABF45219.1| NADH dehydrogenase subunit I [Deinococcus geothermalis DSM 11300]
          Length = 179

 Score =  127 bits (319), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 54/134 (40%), Positives = 77/134 (57%), Gaps = 6/134 (4%)

Query: 15  EFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPN-GEERCIACKLCEAIC 73
           +      + L   F+   T++YP E+ +  PRFRG H L R+P+ G E+CI C LC A+C
Sbjct: 5   DIAKGMGVTLGKLFQKPVTVSYPEERVTLQPRFRGRHVLTRHPDTGLEKCIGCSLCAAVC 64

Query: 74  PAQAITIESGPRCH-----DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
           PA AI +E+           G R    Y+I+M++CI+CGLC+EACP  A+V G  FE A 
Sbjct: 65  PAYAIYVEAAENDPLNPTSPGERYAKVYEINMLRCIFCGLCEEACPTGAVVLGNEFEMAD 124

Query: 129 ETRQELYYDKERLL 142
              ++  Y KE +L
Sbjct: 125 YRSRDFVYGKEDML 138


>gi|326562847|gb|EGE13135.1| NADH dehydrogenase subunit I [Moraxella catarrhalis 103P14B1]
 gi|326577018|gb|EGE26913.1| NADH dehydrogenase subunit I [Moraxella catarrhalis 101P30B1]
          Length = 182

 Score =  127 bits (319), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 50/133 (37%), Positives = 74/133 (55%), Gaps = 1/133 (0%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           +   V + ++   +  + + TI YP +     PRFRG   L R P+G+ERC+AC LC   
Sbjct: 12  MFTIVRSMWMVNSHALRPRGTILYPEQPVPVPPRFRGRIVLTRDPDGDERCVACNLCAVA 71

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           CP   I+++   R  DG      + I+  +C++CG+C+EACP  AI   P+FE     RQ
Sbjct: 72  CPVGCISLQKAER-EDGRWYPEFFRINFSRCVFCGMCEEACPTTAIQLTPDFELGEYDRQ 130

Query: 133 ELYYDKERLLNNG 145
            L Y+KE LL +G
Sbjct: 131 NLVYEKEHLLISG 143


>gi|311278762|ref|YP_003940993.1| NADH-quinone oxidoreductase, chain I [Enterobacter cloacae SCF1]
 gi|308747957|gb|ADO47709.1| NADH-quinone oxidoreductase, chain I [Enterobacter cloacae SCF1]
          Length = 180

 Score =  127 bits (319), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 54/142 (38%), Positives = 74/142 (52%), Gaps = 8/142 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LKE +  F   +R       + F  + T  YP E     PR+RG   L R P+G ERC
Sbjct: 1   MTLKEILVGFGTQVRSIWMIGLHAFAKRETQMYPEEPVYLPPRYRGRIVLTRDPDGSERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC   CP   I+++       G      + I+  +CI+CGLC+EACP  AI   P+
Sbjct: 61  VACNLCAVACPVGCISLQKAEMQD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119

Query: 124 FEFATETRQELYYDKERLLNNG 145
           FE     RQ+L Y+KE LL +G
Sbjct: 120 FELGEYKRQDLVYEKEDLLISG 141


>gi|304312247|ref|YP_003811845.1| NADH dehydrogenase I, chain I [gamma proteobacterium HdN1]
 gi|301797980|emb|CBL46202.1| NADH dehydrogenase I, chain I [gamma proteobacterium HdN1]
          Length = 175

 Score =  127 bits (319), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 53/129 (41%), Positives = 78/129 (60%), Gaps = 1/129 (0%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           + +    L + F  K T+ YP E+   +PR+RG   L R P+G+ERC+AC LC ++CP  
Sbjct: 9   LVSLGTVLSHTFSKKATVQYPEERPYLAPRYRGRIILSRDPDGDERCVACNLCASVCPPA 68

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
            I+++ G R  DG    V + I+  +CI CG+C+EACP  AI   P+FE     RQ++ Y
Sbjct: 69  CISLQKGER-EDGRWYPVFFRINFSRCIMCGMCEEACPTYAIQLTPDFEMGEYVRQDMVY 127

Query: 137 DKERLLNNG 145
           +KE LL +G
Sbjct: 128 EKEDLLISG 136


>gi|227542301|ref|ZP_03972350.1| NADH dehydrogenase subunit I [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227181901|gb|EEI62873.1| NADH dehydrogenase subunit I [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 205

 Score =  127 bits (319), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 51/136 (37%), Positives = 76/136 (55%), Gaps = 5/136 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
                +     F+ K+T+NYP +   T+PRF G H L R+P+G E+C+ C+LC   CPA 
Sbjct: 7   WRGMAVTFGAMFREKSTVNYPKKPAETNPRFHGRHQLNRWPDGLEKCVGCELCAWACPAD 66

Query: 77  AITIES-----GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E+       R   G R    Y+I+ ++CI+CG+C EACP  A+     FE A  +R
Sbjct: 67  AIRVEAAANTDEERYSPGERYGKVYEINYLRCIFCGMCIEACPTRALTMTNEFELANVSR 126

Query: 132 QELYYDKERLLNNGDR 147
           + L Y K++LL   + 
Sbjct: 127 EALIYGKDKLLAPLED 142


>gi|82702149|ref|YP_411715.1| NADH dehydrogenase subunit I [Nitrosospira multiformis ATCC 25196]
 gi|110287762|sp|Q2YA98|NUOI1_NITMU RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName:
           Full=NADH dehydrogenase I subunit I 1; AltName:
           Full=NDH-1 subunit I 1
 gi|82410214|gb|ABB74323.1| NADH dehydrogenase subunit I [Nitrosospira multiformis ATCC 25196]
          Length = 171

 Score =  127 bits (319), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 51/129 (39%), Positives = 73/129 (56%), Gaps = 1/129 (0%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           +   ++   + F+ + TI YP E  +  PR+RG   L R P+GEERC+AC LC A CP  
Sbjct: 5   LKTMWIVFLHMFRRRVTIQYPDEMPNIPPRWRGRIILSRDPDGEERCVACYLCAAACPVD 64

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
            I +++        R    + I+  +CI+CG C+EACP DAI   P+FE     R+ L Y
Sbjct: 65  CIALQATED-EHERRYPEFFRINFSRCIFCGFCEEACPTDAIQLTPDFEMGEYNRKNLVY 123

Query: 137 DKERLLNNG 145
           +KE LL +G
Sbjct: 124 EKEDLLIDG 132


>gi|197116572|ref|YP_002136999.1| NADH dehydrogenase subunit I [Geobacter bemidjiensis Bem]
 gi|197085932|gb|ACH37203.1| NADH dehydrogenase I, I subunit [Geobacter bemidjiensis Bem]
          Length = 176

 Score =  127 bits (319), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 45/133 (33%), Positives = 68/133 (51%), Gaps = 1/133 (0%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           +KE +    +   + ++   T+ +P E+    PRFRG   L R P+G ERC+AC LC   
Sbjct: 7   IKEILTGLSITFSHIWRKPVTVQFPEEQRPMPPRFRGSIVLTRDPDGAERCVACYLCSGA 66

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           CP   I++ +     +G R    + I+  +CI CG+C EACP  AI   P          
Sbjct: 67  CPVDCISMAAAE-GENGRRYAAWFRINFSRCILCGMCAEACPTLAIQMSPEMFRCKRQVM 125

Query: 133 ELYYDKERLLNNG 145
           ++ Y+KE LL +G
Sbjct: 126 DMVYEKEDLLIDG 138


>gi|49081734|gb|AAT50267.1| PA2644 [synthetic construct]
          Length = 183

 Score =  127 bits (319), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 50/129 (38%), Positives = 72/129 (55%), Gaps = 1/129 (0%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           + +  +   + F+ + T+ YP E     PR+RG   L R P+GEERC+AC LC   CP  
Sbjct: 16  LRSLVMIFGHAFRKRDTLQYPEEPVYLPPRYRGRIVLTRDPDGEERCVACNLCAVACPVG 75

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
            I+++      DG      + I+  +CI+CGLC+EACP  AI   P+FE     RQ+L Y
Sbjct: 76  CISLQKAE-TEDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDFEMGEFKRQDLVY 134

Query: 137 DKERLLNNG 145
           +K  LL +G
Sbjct: 135 EKHDLLISG 143


>gi|283786349|ref|YP_003366214.1| NADH-quinone oxidoreductase subunit I [Citrobacter rodentium
           ICC168]
 gi|282949803|emb|CBG89426.1| NADH-quinone oxidoreductase subunit I [Citrobacter rodentium
           ICC168]
          Length = 180

 Score =  127 bits (319), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 57/142 (40%), Positives = 76/142 (53%), Gaps = 8/142 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LKE +  F   +R       + F  + T  YP E     PRFRG   L R P+GEERC
Sbjct: 1   MTLKELLVGFGTQVRSIWMIGLHAFAKRETRMYPEEPVYLPPRFRGRIVLTRDPDGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC   CP   I+++      DG      + I+  +CI+CGLC+EACP  AI   P+
Sbjct: 61  VACNLCAVACPVGCISLQKAE-TKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119

Query: 124 FEFATETRQELYYDKERLLNNG 145
           FE     RQ+L Y+KE LL +G
Sbjct: 120 FELGEYKRQDLVYEKEDLLISG 141


>gi|317048932|ref|YP_004116580.1| NADH-quinone oxidoreductase subunit I [Pantoea sp. At-9b]
 gi|316950549|gb|ADU70024.1| NADH-quinone oxidoreductase, chain I [Pantoea sp. At-9b]
          Length = 180

 Score =  127 bits (319), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 54/142 (38%), Positives = 75/142 (52%), Gaps = 8/142 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LK+ V  F   +R       + F  + T  YP E     PR+RG   L R P+GEERC
Sbjct: 1   MTLKDIVVGFGTTVRSIWMIGMHAFAKRETQMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC   CP   I+++       G      + I+  +CI+CGLC+EACP  AI   P+
Sbjct: 61  VACNLCAVACPVGCISLQKAEMQD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119

Query: 124 FEFATETRQELYYDKERLLNNG 145
           FE     RQ+L Y+K+ LL +G
Sbjct: 120 FELGEFKRQDLVYEKQDLLISG 141


>gi|320449682|ref|YP_004201778.1| NADH-quinone oxidoreductase subunit I [Thermus scotoductus SA-01]
 gi|320149851|gb|ADW21229.1| NADH-quinone oxidoreductase, subunit I [Thermus scotoductus SA-01]
          Length = 182

 Score =  127 bits (319), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 59/151 (39%), Positives = 81/151 (53%), Gaps = 7/151 (4%)

Query: 11  LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70
           + LK    +  + L+Y F    T+ YP    +  PRF G H L R+PNG E+CI C LC 
Sbjct: 1   MTLKALAQSLGITLKYLFSKPVTVPYPDAPVALKPRFHGRHVLTRHPNGLEKCIGCSLCA 60

Query: 71  AICPAQAITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           A CPA AI +E      +     G R    Y+I+M++CI+CGLC+EACP  AIV G +FE
Sbjct: 61  AACPAYAIYVEPAENDPENPVSAGERYAKVYEINMLRCIFCGLCEEACPTGAIVLGYDFE 120

Query: 126 FATETRQELYYDKERLL--NNGDRWESEIVR 154
            A     +L Y KE +L    G + +    +
Sbjct: 121 MADYEYSDLIYGKEDMLVDVVGTKPQRREAK 151


>gi|152971209|ref|YP_001336318.1| NADH dehydrogenase subunit I [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238895798|ref|YP_002920534.1| NADH dehydrogenase subunit I [Klebsiella pneumoniae NTUH-K2044]
 gi|262043321|ref|ZP_06016450.1| NADH-quinone oxidoreductase subunit I [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330003563|ref|ZP_08304678.1| NADH-quinone oxidoreductase subunit I [Klebsiella sp. MS 92-3]
 gi|150956058|gb|ABR78088.1| NADH dehydrogenase subunit I [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238548116|dbj|BAH64467.1| NADH dehydrogenase subunit I [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259039345|gb|EEW40487.1| NADH-quinone oxidoreductase subunit I [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328536903|gb|EGF63202.1| NADH-quinone oxidoreductase subunit I [Klebsiella sp. MS 92-3]
          Length = 180

 Score =  127 bits (319), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 54/142 (38%), Positives = 74/142 (52%), Gaps = 8/142 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LKE +  F   +R       + F  + T  YP E     PR+RG   L R P+G ERC
Sbjct: 1   MTLKELLVGFGTQVRSIWMIGLHAFAKRETRMYPEEPVYLPPRYRGRIVLTRDPDGAERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC   CP   I+++       G      + I+  +CI+CGLC+EACP  AI   P+
Sbjct: 61  VACNLCAVACPVGCISLQKAETVD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119

Query: 124 FEFATETRQELYYDKERLLNNG 145
           FE     RQ+L Y+KE LL +G
Sbjct: 120 FELGEYKRQDLVYEKEDLLISG 141


>gi|225164251|ref|ZP_03726524.1| NADH-quinone oxidoreductase, chain I [Opitutaceae bacterium TAV2]
 gi|224801156|gb|EEG19479.1| NADH-quinone oxidoreductase, chain I [Opitutaceae bacterium TAV2]
          Length = 182

 Score =  127 bits (319), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 47/139 (33%), Positives = 72/139 (51%), Gaps = 5/139 (3%)

Query: 12  FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71
           +L +  G     L++      T+ YP ++    P +RG   L   P+G E+C++C+LCE 
Sbjct: 18  YLPQIAGGLKTTLKHMVAKPVTMEYPEQRPEIPPGYRGAPTLVYDPHGREKCVSCQLCEF 77

Query: 72  ICPAQAITIESGPRCH-----DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
           +CP +AI I  G            +R   + IDM++CIYCG CQE CP +AI    ++  
Sbjct: 78  VCPPKAIRITPGEIPSDDPNAHVEKRPQEFKIDMLRCIYCGFCQEVCPEEAIWLQNHYTV 137

Query: 127 ATETRQELYYDKERLLNNG 145
              TR EL  +K++L   G
Sbjct: 138 TGFTRDELVNNKQKLYEMG 156


>gi|156933129|ref|YP_001437045.1| NADH dehydrogenase subunit I [Cronobacter sakazakii ATCC BAA-894]
 gi|226737391|sp|A7MPB5|NUOI_ENTS8 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|156531383|gb|ABU76209.1| hypothetical protein ESA_00939 [Cronobacter sakazakii ATCC BAA-894]
          Length = 180

 Score =  127 bits (318), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 54/142 (38%), Positives = 75/142 (52%), Gaps = 8/142 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LK+ V  F   LR       + F  + T  YP E     PR+RG   L R P+G+ERC
Sbjct: 1   MTLKDIVVGFGTQLRSIWMIGLHAFSKRETRMYPEEPVYLPPRYRGRIVLTRDPDGQERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC   CP   I+++       G      + I+  +CI+CG+C+EACP  AI   P+
Sbjct: 61  VACNLCAVACPVGCISLQKAETVD-GRWYPEFFRINFSRCIFCGMCEEACPTTAIQLTPD 119

Query: 124 FEFATETRQELYYDKERLLNNG 145
           FE     RQ+L Y+KE LL +G
Sbjct: 120 FELGEFKRQDLVYEKEDLLISG 141


>gi|302035984|ref|YP_003796306.1| NADH-quinone oxidoreductase subunit I [Candidatus Nitrospira
           defluvii]
 gi|300604048|emb|CBK40380.1| NADH-quinone oxidoreductase, subunit I [Candidatus Nitrospira
           defluvii]
          Length = 191

 Score =  127 bits (318), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 54/160 (33%), Positives = 82/160 (51%), Gaps = 2/160 (1%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFK-AKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           F   +  L   E +      L +       T+ YP EK      +RG  AL RY +G E+
Sbjct: 15  FGDWLKTLTFYELLVGMKATLTHLLNYKPITLQYPHEKRLLPDNYRGMLALLRYDDGTEK 74

Query: 63  CIACKLCEAICPAQAITIESGPRC-HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           C+ C LCEA CP++ I + SG        R +  Y +DM +C++CGLC +ACPVDA+   
Sbjct: 75  CVGCDLCEAACPSRVIRVVSGEVPGEPTKRYSKEYYMDMTRCLFCGLCVDACPVDALGMT 134

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161
             FE+A   +++L+ +K++LL  GDR      + +    P
Sbjct: 135 REFEWAVYDKRQLHLNKQQLLAIGDRSFPVREKRLELQHP 174


>gi|91200370|emb|CAJ73416.1| strongly similar to NADH dehydrogenase I chain I [Candidatus
           Kuenenia stuttgartiensis]
          Length = 171

 Score =  127 bits (318), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 49/130 (37%), Positives = 72/130 (55%), Gaps = 1/130 (0%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           +   +L   + F+ + T  YP EK     R+RG   L R P+G ERC+ C LC A+CP  
Sbjct: 5   LKTIWLAFLHMFRKRVTYQYPEEKAPLPARWRGRIILSRDPDGGERCVGCYLCAAVCPVD 64

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
            I++++      G R    + I+  +CI+CG C++ACP  AI   P+FE     RQ L Y
Sbjct: 65  CISLQATED-EYGRRYPEFFRINFSRCIFCGFCEDACPTYAIQLVPDFEMCEYNRQNLVY 123

Query: 137 DKERLLNNGD 146
           +KE LL +G+
Sbjct: 124 EKEDLLISGE 133


>gi|167549680|ref|ZP_02343439.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|198242928|ref|YP_002216391.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|197937444|gb|ACH74777.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|205325199|gb|EDZ13038.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|326624142|gb|EGE30487.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 180

 Score =  127 bits (318), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 56/142 (39%), Positives = 76/142 (53%), Gaps = 8/142 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LKE +  F   +R       + F  + T  YP E     PR+RG   L R P+GEERC
Sbjct: 1   MTLKELLVGFGTQVRSIWMIGLHAFAKRETRMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC   CP   I+++      DG      + I+  +CI+CGLC+EACP  AI   P+
Sbjct: 61  VACNLCAVACPVGCISLQKAE-TKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119

Query: 124 FEFATETRQELYYDKERLLNNG 145
           FE     RQ+L Y+KE LL +G
Sbjct: 120 FELGEYKRQDLVYEKEDLLISG 141


>gi|269926641|ref|YP_003323264.1| NADH-quinone oxidoreductase, chain I [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269790301|gb|ACZ42442.1| NADH-quinone oxidoreductase, chain I [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 170

 Score =  127 bits (318), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 56/137 (40%), Positives = 73/137 (53%), Gaps = 2/137 (1%)

Query: 11  LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPN-GEERCIACKLC 69
           + L +    F++ L    +   T  YP E    + RFRG   L   P  GEE+C AC LC
Sbjct: 1   MALLDRFKGFYVVLSQMLQPPVTRQYPKEPRKMTHRFRGIPVLVTDPETGEEKCTACGLC 60

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
              CP   IT+ S P    G R  V Y+I  ++C++CGLC EACPV AI    +FE A+ 
Sbjct: 61  ATACPNNVITMTSEPHATKG-RHPVTYNIQALRCLFCGLCVEACPVKAIQMSHHFELAST 119

Query: 130 TRQELYYDKERLLNNGD 146
           +R  L YDK+RLL  G 
Sbjct: 120 SRDNLLYDKQRLLELGR 136


>gi|15597840|ref|NP_251334.1| NADH dehydrogenase subunit I [Pseudomonas aeruginosa PAO1]
 gi|107102164|ref|ZP_01366082.1| hypothetical protein PaerPA_01003214 [Pseudomonas aeruginosa PACS2]
 gi|116050631|ref|YP_790550.1| NADH dehydrogenase subunit I [Pseudomonas aeruginosa UCBPP-PA14]
 gi|152984090|ref|YP_001347926.1| NADH dehydrogenase subunit I [Pseudomonas aeruginosa PA7]
 gi|218891195|ref|YP_002440061.1| NADH dehydrogenase subunit I [Pseudomonas aeruginosa LESB58]
 gi|254235626|ref|ZP_04928949.1| NADH Dehydrogenase I chain I [Pseudomonas aeruginosa C3719]
 gi|254241074|ref|ZP_04934396.1| NADH Dehydrogenase I chain I [Pseudomonas aeruginosa 2192]
 gi|296388895|ref|ZP_06878370.1| NADH dehydrogenase subunit I [Pseudomonas aeruginosa PAb1]
 gi|313107683|ref|ZP_07793865.1| NADH Dehydrogenase I chain I [Pseudomonas aeruginosa 39016]
 gi|81783693|sp|Q9I0J4|NUOI_PSEAE RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|122259754|sp|Q02ND6|NUOI_PSEAB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|166918795|sp|A6V4E1|NUOI_PSEA7 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|226737408|sp|B7VAQ8|NUOI_PSEA8 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|9948713|gb|AAG06032.1|AE004693_3 NADH Dehydrogenase I chain I [Pseudomonas aeruginosa PAO1]
 gi|115585852|gb|ABJ11867.1| NADH Dehydrogenase I chain I [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126167557|gb|EAZ53068.1| NADH Dehydrogenase I chain I [Pseudomonas aeruginosa C3719]
 gi|126194452|gb|EAZ58515.1| NADH Dehydrogenase I chain I [Pseudomonas aeruginosa 2192]
 gi|150959248|gb|ABR81273.1| NADH Dehydrogenase I chain I [Pseudomonas aeruginosa PA7]
 gi|218771420|emb|CAW27187.1| NADH Dehydrogenase I chain I [Pseudomonas aeruginosa LESB58]
 gi|310880367|gb|EFQ38961.1| NADH Dehydrogenase I chain I [Pseudomonas aeruginosa 39016]
          Length = 182

 Score =  127 bits (318), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 50/129 (38%), Positives = 72/129 (55%), Gaps = 1/129 (0%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           + +  +   + F+ + T+ YP E     PR+RG   L R P+GEERC+AC LC   CP  
Sbjct: 16  LRSLVMIFGHAFRKRDTLQYPEEPVYLPPRYRGRIVLTRDPDGEERCVACNLCAVACPVG 75

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
            I+++      DG      + I+  +CI+CGLC+EACP  AI   P+FE     RQ+L Y
Sbjct: 76  CISLQKAE-TEDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDFEMGEFKRQDLVY 134

Query: 137 DKERLLNNG 145
           +K  LL +G
Sbjct: 135 EKHDLLISG 143


>gi|237732312|ref|ZP_04562793.1| NADH dehydrogenase subunit I [Citrobacter sp. 30_2]
 gi|283832289|ref|ZP_06352030.1| NADH-quinone oxidoreductase subunit I [Citrobacter youngae ATCC
           29220]
 gi|226907851|gb|EEH93769.1| NADH dehydrogenase subunit I [Citrobacter sp. 30_2]
 gi|291071934|gb|EFE10043.1| NADH-quinone oxidoreductase subunit I [Citrobacter youngae ATCC
           29220]
          Length = 180

 Score =  127 bits (318), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 57/142 (40%), Positives = 75/142 (52%), Gaps = 8/142 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LKE    F   +R       + F  + T  YP E     PRFRG   L R P+GEERC
Sbjct: 1   MTLKELFVGFGTQVRSIWMIGLHAFAKRETQMYPEEPVYLPPRFRGRIVLTRDPDGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC   CP   I+++      DG      + I+  +CI+CGLC+EACP  AI   P+
Sbjct: 61  VACNLCAVACPVGCISLQKAE-TKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119

Query: 124 FEFATETRQELYYDKERLLNNG 145
           FE     RQ+L Y+KE LL +G
Sbjct: 120 FELGEYKRQDLVYEKEDLLISG 141


>gi|320532478|ref|ZP_08033301.1| NADH-quinone oxidoreductase, chain I [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320135308|gb|EFW27433.1| NADH-quinone oxidoreductase, chain I [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 235

 Score =  127 bits (318), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 51/133 (38%), Positives = 69/133 (51%), Gaps = 6/133 (4%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  + + +   F+   T  YPFE     PR+ G H L RY +G E+CI C+LC   CPA 
Sbjct: 31  VAGYGVTISSMFRPVVTEQYPFEAPQVMPRYHGRHQLNRYDDGLEKCIGCELCAWACPAD 90

Query: 77  AIT-----IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF-EFATET 130
           AI       E G +   G R    Y I+ ++CI+CG+C EACP  A+    +F E     
Sbjct: 91  AIYVEAASNEPGAQYSPGERYGRVYQINYLRCIFCGMCIEACPTRALTMSTDFDELVGPG 150

Query: 131 RQELYYDKERLLN 143
           R+ L Y+KE LL 
Sbjct: 151 REGLIYEKEDLLA 163


>gi|238751241|ref|ZP_04612735.1| NADH-quinone oxidoreductase subunit I [Yersinia rohdei ATCC 43380]
 gi|238710515|gb|EEQ02739.1| NADH-quinone oxidoreductase subunit I [Yersinia rohdei ATCC 43380]
          Length = 180

 Score =  127 bits (318), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 51/129 (39%), Positives = 72/129 (55%), Gaps = 1/129 (0%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V + ++   + F  + T+ YP E     PR+RG   L R P+GEERC+AC LC   CP  
Sbjct: 14  VRSLWMIGSHAFHKRETLMYPEEPVYLPPRYRGRIVLTRDPDGEERCVACNLCAVACPVG 73

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
            I+++       G      + I+  +CI+CGLC+EACP  AI   P+FE     RQ+L Y
Sbjct: 74  CISLQKAEHKD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDFEMGEFKRQDLVY 132

Query: 137 DKERLLNNG 145
           +KE LL +G
Sbjct: 133 EKEDLLISG 141


>gi|262373368|ref|ZP_06066647.1| NADH-plastoquinone oxidoreductase, I subunit [Acinetobacter junii
           SH205]
 gi|262313393|gb|EEY94478.1| NADH-plastoquinone oxidoreductase, I subunit [Acinetobacter junii
           SH205]
          Length = 180

 Score =  127 bits (318), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 52/135 (38%), Positives = 74/135 (54%), Gaps = 3/135 (2%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGS--TSPRFRGEHALRRYPNGEERCIACKLCE 70
               V + ++   +  + + TI YP         PRFRG   L R P+GEERC+AC LC 
Sbjct: 8   FGSIVRSLWMVFSHATRKRDTILYPEVPAEQIVPPRFRGRIILTRDPDGEERCVACNLCA 67

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
             CP   I+++   +  DG      + I+  +CI+CG+C+EACP  AI   P+FE A   
Sbjct: 68  VACPVGCISLQKAEK-EDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQMTPDFELAEYV 126

Query: 131 RQELYYDKERLLNNG 145
           RQ+L Y+KE LL +G
Sbjct: 127 RQDLVYEKENLLISG 141


>gi|226953545|ref|ZP_03824009.1| NADH dehydrogenase subunit I [Acinetobacter sp. ATCC 27244]
 gi|294649467|ref|ZP_06726891.1| NADH-quinone oxidoreductase subunit I [Acinetobacter haemolyticus
           ATCC 19194]
 gi|226835723|gb|EEH68106.1| NADH dehydrogenase subunit I [Acinetobacter sp. ATCC 27244]
 gi|292824637|gb|EFF83416.1| NADH-quinone oxidoreductase subunit I [Acinetobacter haemolyticus
           ATCC 19194]
          Length = 180

 Score =  127 bits (318), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 52/135 (38%), Positives = 74/135 (54%), Gaps = 3/135 (2%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGS--TSPRFRGEHALRRYPNGEERCIACKLCE 70
               V + ++   +  + + TI YP         PRFRG   L R P+GEERC+AC LC 
Sbjct: 8   FGSIVRSLWMVFSHVTRKRDTILYPEVPAEQIVPPRFRGRIILTRDPDGEERCVACNLCA 67

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
             CP   I+++   +  DG      + I+  +CI+CG+C+EACP  AI   P+FE A   
Sbjct: 68  VACPVGCISLQKAEK-EDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQMTPDFELAEYV 126

Query: 131 RQELYYDKERLLNNG 145
           RQ+L Y+KE LL +G
Sbjct: 127 RQDLVYEKENLLISG 141


>gi|206576263|ref|YP_002237331.1| NADH-quinone oxidoreductase, I subunit [Klebsiella pneumoniae 342]
 gi|288934261|ref|YP_003438320.1| NADH-quinone oxidoreductase, chain I [Klebsiella variicola At-22]
 gi|290508464|ref|ZP_06547835.1| NADH-quinone oxidoreductase subunit I [Klebsiella sp. 1_1_55]
 gi|206565321|gb|ACI07097.1| NADH-quinone oxidoreductase, I subunit [Klebsiella pneumoniae 342]
 gi|288888990|gb|ADC57308.1| NADH-quinone oxidoreductase, chain I [Klebsiella variicola At-22]
 gi|289777858|gb|EFD85855.1| NADH-quinone oxidoreductase subunit I [Klebsiella sp. 1_1_55]
          Length = 180

 Score =  127 bits (318), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 55/142 (38%), Positives = 75/142 (52%), Gaps = 8/142 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LKE +  F   +R       + F  + T  YP E     PR+RG   L R P+G ERC
Sbjct: 1   MTLKELLVGFGTQVRSIWMIGLHAFAKRETRMYPEEPVYLPPRYRGRIVLTRDPDGAERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC   CP   I+++      DG      + I+  +CI+CGLC+EACP  AI   P+
Sbjct: 61  VACNLCAVACPVGCISLQKAE-TKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119

Query: 124 FEFATETRQELYYDKERLLNNG 145
           FE     RQ+L Y+KE LL +G
Sbjct: 120 FELGEYKRQDLVYEKEDLLISG 141


>gi|300717644|ref|YP_003742447.1| NADH dehydrogenase I chain I [Erwinia billingiae Eb661]
 gi|299063480|emb|CAX60600.1| NADH dehydrogenase I chain I [Erwinia billingiae Eb661]
          Length = 180

 Score =  126 bits (317), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 54/142 (38%), Positives = 75/142 (52%), Gaps = 8/142 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LK+ V  F   +R         F  + T+ YP E     PR+RG   L R P+G+ERC
Sbjct: 1   MTLKDLVVGFGTTVRSIFLIGMNAFAKRETMMYPEEPVYLPPRYRGRIVLTRDPDGQERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC   CP   I+++       G      + I+  +CI+CGLC+EACP  AI   P+
Sbjct: 61  VACNLCAVACPVGCISLQKAETQD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119

Query: 124 FEFATETRQELYYDKERLLNNG 145
           FE     RQ+L Y+KE LL +G
Sbjct: 120 FELGEFKRQDLVYEKENLLISG 141


>gi|312967579|ref|ZP_07781794.1| NADH-quinone oxidoreductase, chain I family protein [Escherichia
           coli 2362-75]
 gi|312287776|gb|EFR15681.1| NADH-quinone oxidoreductase, chain I family protein [Escherichia
           coli 2362-75]
          Length = 180

 Score =  126 bits (317), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 57/142 (40%), Positives = 77/142 (54%), Gaps = 8/142 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LKE +  F   +R       + F  + T  YP E     PR+RG   L RYP+GEERC
Sbjct: 1   MTLKELLVGFGTQVRSIWMIGLHAFAKRETRMYPEEPVYLPPRYRGRIVLTRYPDGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC   CP   I+++      DG      + I+  +CI+CGLC+EACP  AI   P+
Sbjct: 61  VACNLCAVACPVGCISLQKAE-TKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119

Query: 124 FEFATETRQELYYDKERLLNNG 145
           FE     RQ+L Y+KE LL +G
Sbjct: 120 FEMGEYKRQDLVYEKEDLLISG 141


>gi|16761246|ref|NP_456863.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|16765648|ref|NP_461263.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|29141058|ref|NP_804400.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56412782|ref|YP_149857.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62180891|ref|YP_217308.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161612951|ref|YP_001586916.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|167994669|ref|ZP_02575760.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168229690|ref|ZP_02654748.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168237338|ref|ZP_02662396.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|168242439|ref|ZP_02667371.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|168261663|ref|ZP_02683636.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168465976|ref|ZP_02699846.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168817949|ref|ZP_02829949.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194446441|ref|YP_002041581.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194451795|ref|YP_002046374.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194469216|ref|ZP_03075200.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194738262|ref|YP_002115390.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197249761|ref|YP_002147279.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197263656|ref|ZP_03163730.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197361716|ref|YP_002141352.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|200386777|ref|ZP_03213389.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204929042|ref|ZP_03220185.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205353436|ref|YP_002227237.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207857739|ref|YP_002244390.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|213028651|ref|ZP_03343098.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
 gi|213052937|ref|ZP_03345815.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213419033|ref|ZP_03352099.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
 gi|213427017|ref|ZP_03359767.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213580776|ref|ZP_03362602.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213612295|ref|ZP_03370121.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|224583193|ref|YP_002636991.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|238912400|ref|ZP_04656237.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|75505657|sp|Q57M35|NUOI_SALCH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|81678159|sp|Q5PN58|NUOI_SALPA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|81706883|sp|Q7CQ51|NUOI_SALTY RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|81766252|sp|Q8XFD5|NUOI_SALTI RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|25282717|pir||AG0796 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16420862|gb|AAL21222.1| NADH dehydrogenase I chain I [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16503545|emb|CAD07553.1| NADH dehydrogenase I chain I [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136684|gb|AAO68249.1| NADH dehydrogenase I chain I [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56127039|gb|AAV76545.1| NADH dehydrogenase I chain I [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|62128524|gb|AAX66227.1| NADH dehydrogenase I chain I [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161362315|gb|ABX66083.1| hypothetical protein SPAB_00657 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194405104|gb|ACF65326.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194410099|gb|ACF70318.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|194455580|gb|EDX44419.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194713764|gb|ACF92985.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|195631186|gb|EDX49746.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197093192|emb|CAR58636.1| NADH dehydrogenase I chain I [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|197213464|gb|ACH50861.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197241911|gb|EDY24531.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197289600|gb|EDY28963.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|199603875|gb|EDZ02420.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|204321586|gb|EDZ06785.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205273217|emb|CAR38180.1| NADH dehydrogenase I chain I [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205327493|gb|EDZ14257.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205335833|gb|EDZ22597.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205338317|gb|EDZ25081.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|205345035|gb|EDZ31799.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205349680|gb|EDZ36311.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206709542|emb|CAR33887.1| NADH dehydrogenase I chain I [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|224467720|gb|ACN45550.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|261247527|emb|CBG25354.1| NADH dehydrogenase I chain I [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267994416|gb|ACY89301.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301158879|emb|CBW18392.1| NADH dehydrogenase I chain I [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913312|dbj|BAJ37286.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320086755|emb|CBY96527.1| NADH dehydrogenase I chain I [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321222977|gb|EFX48048.1| NADH-ubiquinone oxidoreductase chain I [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322617067|gb|EFY13973.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322617627|gb|EFY14526.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322624743|gb|EFY21572.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322630292|gb|EFY27062.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322634473|gb|EFY31206.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322639183|gb|EFY35875.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322640046|gb|EFY36713.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322645733|gb|EFY42257.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322651508|gb|EFY47883.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322656068|gb|EFY52367.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322659421|gb|EFY55668.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322665881|gb|EFY62064.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322669879|gb|EFY66020.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322673865|gb|EFY69962.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322678623|gb|EFY74679.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322683581|gb|EFY79595.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322687657|gb|EFY83627.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|322715370|gb|EFZ06941.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
 gi|323193509|gb|EFZ78714.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323198414|gb|EFZ83516.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323201928|gb|EFZ86990.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323208534|gb|EFZ93473.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323209757|gb|EFZ94681.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323218293|gb|EGA03003.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323222949|gb|EGA07298.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323227385|gb|EGA11550.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323232288|gb|EGA16391.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235678|gb|EGA19762.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323241161|gb|EGA25197.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323244903|gb|EGA28905.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323250022|gb|EGA33916.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323251634|gb|EGA35502.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323254945|gb|EGA38736.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323260325|gb|EGA43944.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323268099|gb|EGA51576.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323270808|gb|EGA54246.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
 gi|332989254|gb|AEF08237.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 180

 Score =  126 bits (317), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 56/142 (39%), Positives = 76/142 (53%), Gaps = 8/142 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LKE +  F   +R       + F  + T  YP E     PR+RG   L R P+GEERC
Sbjct: 1   MTLKELLVGFGTQVRSIWMIGLHAFAKRETRMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC   CP   I+++      DG      + I+  +CI+CGLC+EACP  AI   P+
Sbjct: 61  VACNLCAVACPVGCISLQKAE-TKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119

Query: 124 FEFATETRQELYYDKERLLNNG 145
           FE     RQ+L Y+KE LL +G
Sbjct: 120 FELGEYKRQDLVYEKEDLLISG 141


>gi|39998523|ref|NP_954474.1| NADH dehydrogenase subunit I [Geobacter sulfurreducens PCA]
 gi|81700840|sp|Q746T4|NUOI2_GEOSL RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName:
           Full=NADH dehydrogenase I subunit I 2; AltName:
           Full=NDH-1 subunit I 2
 gi|39985470|gb|AAR36824.1| NADH dehydrogenase I, I subunit [Geobacter sulfurreducens PCA]
 gi|298507467|gb|ADI86190.1| NADH dehydrogenase I, I subunit [Geobacter sulfurreducens KN400]
          Length = 176

 Score =  126 bits (317), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 51/133 (38%), Positives = 73/133 (54%), Gaps = 1/133 (0%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
            K      F+  ++ F+   T+ YP  K + +PR+R    L R P+G ERC+AC LC A 
Sbjct: 7   FKAIATGLFVTWKHIFRRPVTVEYPEVKRTPAPRYRARIVLTRDPDGGERCVACYLCSAA 66

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           CP   I++E+     +G R    + I+  +CI+CGLC EACP  AI   P++E       
Sbjct: 67  CPVDCISMEAAE-GEEGRRYARWFRINFSRCIFCGLCAEACPTLAIQMTPDYEICERDIM 125

Query: 133 ELYYDKERLLNNG 145
           EL Y+KE LL +G
Sbjct: 126 ELVYEKEDLLIDG 138


>gi|148262406|ref|YP_001229112.1| NADH dehydrogenase subunit I [Geobacter uraniireducens Rf4]
 gi|146395906|gb|ABQ24539.1| NADH dehydrogenase subunit I [Geobacter uraniireducens Rf4]
          Length = 176

 Score =  126 bits (317), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 52/133 (39%), Positives = 72/133 (54%), Gaps = 1/133 (0%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           +K      +   ++ F+   TI YP EK    PR+R    L R P G ERC+AC LC A 
Sbjct: 7   IKALCIGLWTTWKHIFRRPATIQYPEEKRIPYPRYRARIVLTRDPEGGERCVACYLCSAA 66

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           CP   I++++  R  +G R    + I+  +CI+CGLC EACP  AI   P++E       
Sbjct: 67  CPVDCISMQAAER-ENGRRYAAWFRINFSRCIFCGLCAEACPTMAIQMTPDYEICKRDIM 125

Query: 133 ELYYDKERLLNNG 145
           EL Y+KE LL +G
Sbjct: 126 ELVYEKEDLLIDG 138


>gi|238788647|ref|ZP_04632439.1| NADH-quinone oxidoreductase subunit I [Yersinia frederiksenii ATCC
           33641]
 gi|238723242|gb|EEQ14890.1| NADH-quinone oxidoreductase subunit I [Yersinia frederiksenii ATCC
           33641]
          Length = 180

 Score =  126 bits (317), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 51/129 (39%), Positives = 71/129 (55%), Gaps = 1/129 (0%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V + ++   + F  + T  YP E     PR+RG   L R P+GEERC+AC LC   CP  
Sbjct: 14  VRSLWMIGSHAFHKRETQMYPEEPVYLPPRYRGRIVLTRDPDGEERCVACNLCAVACPVG 73

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
            I+++       G      + I+  +CI+CGLC+EACP  AI   P+FE     RQ+L Y
Sbjct: 74  CISLQKAEHKD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDFEMGEFKRQDLVY 132

Query: 137 DKERLLNNG 145
           +KE LL +G
Sbjct: 133 EKEDLLISG 141


>gi|227535963|ref|ZP_03966012.1| NADH dehydrogenase (quinone) [Sphingobacterium spiritivorum ATCC
           33300]
 gi|300771669|ref|ZP_07081544.1| NADH-quinone oxidoreductase subunit I [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|227244206|gb|EEI94221.1| NADH dehydrogenase (quinone) [Sphingobacterium spiritivorum ATCC
           33300]
 gi|300761658|gb|EFK58479.1| NADH-quinone oxidoreductase subunit I [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 174

 Score =  126 bits (317), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 53/149 (35%), Positives = 80/149 (53%), Gaps = 10/149 (6%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M I+      ++L        + LR+FFK   T+ YP +    S  FRG+H+L+R   G 
Sbjct: 16  MNIWER----MYLPAIAKGLAITLRHFFKKIPTVKYPEQIRPYSKNFRGQHSLKRDEQGR 71

Query: 61  ERCIACKLCEAICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQEACP 114
           ERC AC LC   CPA+AIT+ +  R           +    Y+I+M++CI+CGLC+EACP
Sbjct: 72  ERCTACGLCALSCPAEAITMTAAERQKGEENLYREEKYAAVYEINMLRCIFCGLCEEACP 131

Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLN 143
            +AI        A+  R++  Y K++L+ 
Sbjct: 132 KEAIYLDGPHVTASYLRKDFIYGKDKLVE 160


>gi|256425960|ref|YP_003126613.1| NADH-quinone oxidoreductase, chain I [Chitinophaga pinensis DSM
           2588]
 gi|256040868|gb|ACU64412.1| NADH-quinone oxidoreductase, chain I [Chitinophaga pinensis DSM
           2588]
          Length = 169

 Score =  126 bits (317), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 53/143 (37%), Positives = 75/143 (52%), Gaps = 6/143 (4%)

Query: 7   NVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIAC 66
            +  ++L   +    +  ++ +K K T+ YP +K   SP FRG H L R   G E C AC
Sbjct: 18  FIESIYLWNIIKGMIITFKHIWKRKETVKYPEQKREFSPVFRGLHILNRDAEGRENCTAC 77

Query: 67  KLCEAICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            LC   CPA+AIT+E+  R           +   RY+I+M++CI+CG C+EACP DAI  
Sbjct: 78  GLCAVACPAEAITMEAAERKAGEEHLYREEKYAARYEINMLRCIFCGFCEEACPKDAIYL 137

Query: 121 GPNFEFATETRQELYYDKERLLN 143
              F  A   R+   Y K+ LL 
Sbjct: 138 TETFAPANYKREGFIYGKQDLLI 160


>gi|145298716|ref|YP_001141557.1| NADH dehydrogenase subunit I [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|156632701|sp|A4SLN7|NUOI_AERS4 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|142851488|gb|ABO89809.1| NADH dehydrogenase I, I subunit [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 180

 Score =  126 bits (317), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 49/129 (37%), Positives = 75/129 (58%), Gaps = 1/129 (0%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           + +  +   + ++ + T++YP E   + PR+RG   L R P+G+ERC+AC LC   CP  
Sbjct: 14  LRSLGMVFSHAWRPRETLSYPDESIYSPPRYRGRIVLTRDPDGDERCVACNLCAVACPVG 73

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
            I+++   R   G      + I+  +CI+CGLC+EACP  AI   P+FE     RQ+L Y
Sbjct: 74  CISLQKAERDD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDFEMGEYRRQDLVY 132

Query: 137 DKERLLNNG 145
           +KE LL +G
Sbjct: 133 EKEDLLISG 141


>gi|213645876|ref|ZP_03375929.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
          Length = 180

 Score =  126 bits (317), Expect = 9e-28,   Method: Composition-based stats.
 Identities = 56/142 (39%), Positives = 76/142 (53%), Gaps = 8/142 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LKE +  F   +R       + F  + T  YP E     PR+RG   L R P+GEERC
Sbjct: 1   MTLKELLVGFGTQVRSIWMIGLHAFAKRETRMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC   CP   I+++      DG      + I+  +CI+CGLC+EACP  AI   P+
Sbjct: 61  VACNLCAVACPVGCISLQKAE-TKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119

Query: 124 FEFATETRQELYYDKERLLNNG 145
           FE     RQ+L Y+KE LL +G
Sbjct: 120 FELGEYKRQDLVYEKEDLLISG 141


>gi|126666311|ref|ZP_01737290.1| NADH dehydrogenase subunit I [Marinobacter sp. ELB17]
 gi|126629112|gb|EAZ99730.1| NADH dehydrogenase subunit I [Marinobacter sp. ELB17]
          Length = 179

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 56/129 (43%), Positives = 77/129 (59%), Gaps = 1/129 (0%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           +    +   + F+ + T+NYP E+   SPR+RG   L R P+GEERC+AC LC   CP  
Sbjct: 13  LRTLGMVFMHGFRKRETVNYPEEEVYLSPRYRGRIVLTRDPDGEERCVACNLCAVACPVA 72

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
            I++E G R  DG      + I+  +CI+CG+C+EACP  AI   P+FE     RQEL Y
Sbjct: 73  CISLEKGER-EDGRWYPEFFRINFSRCIFCGMCEEACPTSAIQLTPDFEMGEYNRQELVY 131

Query: 137 DKERLLNNG 145
           +KE LL +G
Sbjct: 132 EKEDLLISG 140


>gi|15802828|ref|NP_288855.1| NADH dehydrogenase subunit I [Escherichia coli O157:H7 EDL933]
 gi|15832419|ref|NP_311192.1| NADH dehydrogenase subunit I [Escherichia coli O157:H7 str. Sakai]
 gi|16130216|ref|NP_416784.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli str. K-12
           substr. MG1655]
 gi|24113653|ref|NP_708163.1| NADH dehydrogenase subunit I [Shigella flexneri 2a str. 301]
 gi|26248668|ref|NP_754708.1| NADH dehydrogenase subunit I [Escherichia coli CFT073]
 gi|30063707|ref|NP_837878.1| NADH dehydrogenase subunit I [Shigella flexneri 2a str. 2457T]
 gi|82544759|ref|YP_408706.1| NADH dehydrogenase subunit I [Shigella boydii Sb227]
 gi|89109099|ref|AP_002879.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli str. K-12
           substr. W3110]
 gi|91211573|ref|YP_541559.1| NADH dehydrogenase subunit I [Escherichia coli UTI89]
 gi|110642485|ref|YP_670215.1| NADH dehydrogenase subunit I [Escherichia coli 536]
 gi|110806244|ref|YP_689764.1| NADH dehydrogenase subunit I [Shigella flexneri 5 str. 8401]
 gi|117624470|ref|YP_853383.1| NADH dehydrogenase subunit I [Escherichia coli APEC O1]
 gi|157157555|ref|YP_001463624.1| NADH dehydrogenase subunit I [Escherichia coli E24377A]
 gi|157161769|ref|YP_001459087.1| NADH dehydrogenase subunit I [Escherichia coli HS]
 gi|168748130|ref|ZP_02773152.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4113]
 gi|168755033|ref|ZP_02780040.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4401]
 gi|168761280|ref|ZP_02786287.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4501]
 gi|168767907|ref|ZP_02792914.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4486]
 gi|168772993|ref|ZP_02798000.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4196]
 gi|168780136|ref|ZP_02805143.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4076]
 gi|168787188|ref|ZP_02812195.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC869]
 gi|168798451|ref|ZP_02823458.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC508]
 gi|170019410|ref|YP_001724364.1| NADH dehydrogenase subunit I [Escherichia coli ATCC 8739]
 gi|170081898|ref|YP_001731218.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli str. K-12
           substr. DH10B]
 gi|170681076|ref|YP_001744479.1| NADH dehydrogenase subunit I [Escherichia coli SMS-3-5]
 gi|170767587|ref|ZP_02902040.1| NADH-quinone oxidoreductase, I subunit [Escherichia albertii
           TW07627]
 gi|187731669|ref|YP_001881102.1| NADH dehydrogenase subunit I [Shigella boydii CDC 3083-94]
 gi|188493684|ref|ZP_03000954.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli 53638]
 gi|191166474|ref|ZP_03028304.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli B7A]
 gi|191170159|ref|ZP_03031713.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli F11]
 gi|193062235|ref|ZP_03043330.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli E22]
 gi|193068159|ref|ZP_03049123.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli E110019]
 gi|194427176|ref|ZP_03059727.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli B171]
 gi|194433333|ref|ZP_03065613.1| NADH-quinone oxidoreductase, I subunit [Shigella dysenteriae 1012]
 gi|194436354|ref|ZP_03068456.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli 101-1]
 gi|195935658|ref|ZP_03081040.1| NADH dehydrogenase subunit I [Escherichia coli O157:H7 str. EC4024]
 gi|208805658|ref|ZP_03247995.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4206]
 gi|208814081|ref|ZP_03255410.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4045]
 gi|208818598|ref|ZP_03258918.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4042]
 gi|209399174|ref|YP_002271690.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4115]
 gi|209919729|ref|YP_002293813.1| NADH dehydrogenase subunit I [Escherichia coli SE11]
 gi|215487494|ref|YP_002329925.1| NADH dehydrogenase subunit I [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217326746|ref|ZP_03442829.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. TW14588]
 gi|218548270|ref|YP_002382061.1| NADH dehydrogenase subunit I [Escherichia fergusonii ATCC 35469]
 gi|218554837|ref|YP_002387750.1| NADH dehydrogenase subunit I [Escherichia coli IAI1]
 gi|218559194|ref|YP_002392107.1| NADH dehydrogenase subunit I [Escherichia coli S88]
 gi|218690441|ref|YP_002398653.1| NADH dehydrogenase subunit I [Escherichia coli ED1a]
 gi|218695880|ref|YP_002403547.1| NADH dehydrogenase subunit I [Escherichia coli 55989]
 gi|218700755|ref|YP_002408384.1| NADH dehydrogenase subunit I [Escherichia coli IAI39]
 gi|218705811|ref|YP_002413330.1| NADH dehydrogenase subunit I [Escherichia coli UMN026]
 gi|227887337|ref|ZP_04005142.1| NADH dehydrogenase subunit I [Escherichia coli 83972]
 gi|237704755|ref|ZP_04535236.1| NADH:ubiquinone oxidoreductase [Escherichia sp. 3_2_53FAA]
 gi|238901456|ref|YP_002927252.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli BW2952]
 gi|253772797|ref|YP_003035628.1| NADH dehydrogenase subunit I [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254162290|ref|YP_003045398.1| NADH dehydrogenase subunit I [Escherichia coli B str. REL606]
 gi|254794173|ref|YP_003079010.1| NADH dehydrogenase subunit I [Escherichia coli O157:H7 str.
           TW14359]
 gi|256017563|ref|ZP_05431428.1| NADH dehydrogenase subunit I [Shigella sp. D9]
 gi|256022035|ref|ZP_05435900.1| NADH dehydrogenase subunit I [Escherichia sp. 4_1_40B]
 gi|260844868|ref|YP_003222646.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli O103:H2
           str. 12009]
 gi|260856325|ref|YP_003230216.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli O26:H11
           str. 11368]
 gi|260869004|ref|YP_003235406.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli O111:H-
           str. 11128]
 gi|261223265|ref|ZP_05937546.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli O157:H7
           str. FRIK2000]
 gi|261259185|ref|ZP_05951718.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli O157:H7
           str. FRIK966]
 gi|291283522|ref|YP_003500340.1| NADH-quinone oxidoreductase subunit I [Escherichia coli O55:H7 str.
           CB9615]
 gi|293405747|ref|ZP_06649739.1| NADH-quinone oxidoreductase [Escherichia coli FVEC1412]
 gi|293410641|ref|ZP_06654217.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293415574|ref|ZP_06658217.1| NADH dehydrogenase I subunit I [Escherichia coli B185]
 gi|293446618|ref|ZP_06663040.1| NADH dehydrogenase I subunit I [Escherichia coli B088]
 gi|297518346|ref|ZP_06936732.1| NADH dehydrogenase subunit I [Escherichia coli OP50]
 gi|298381430|ref|ZP_06991029.1| NADH-quinone oxidoreductase subunit I [Escherichia coli FVEC1302]
 gi|300818119|ref|ZP_07098331.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 107-1]
 gi|300822152|ref|ZP_07102294.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 119-7]
 gi|300896955|ref|ZP_07115436.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 198-1]
 gi|300903666|ref|ZP_07121582.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 84-1]
 gi|300918554|ref|ZP_07135144.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 115-1]
 gi|300924540|ref|ZP_07140504.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 182-1]
 gi|300931366|ref|ZP_07146697.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 187-1]
 gi|300936845|ref|ZP_07151734.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 21-1]
 gi|300948575|ref|ZP_07162668.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 116-1]
 gi|300956459|ref|ZP_07168748.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 175-1]
 gi|300981077|ref|ZP_07175349.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 200-1]
 gi|300983376|ref|ZP_07176560.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 45-1]
 gi|301024079|ref|ZP_07187793.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 69-1]
 gi|301026951|ref|ZP_07190344.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 196-1]
 gi|301049034|ref|ZP_07196019.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 185-1]
 gi|301303260|ref|ZP_07209385.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 124-1]
 gi|301328773|ref|ZP_07221821.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 78-1]
 gi|301647622|ref|ZP_07247418.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 146-1]
 gi|306814608|ref|ZP_07448770.1| NADH dehydrogenase subunit I [Escherichia coli NC101]
 gi|307138945|ref|ZP_07498301.1| NADH dehydrogenase subunit I [Escherichia coli H736]
 gi|307311159|ref|ZP_07590803.1| NADH-quinone oxidoreductase, chain I [Escherichia coli W]
 gi|309793160|ref|ZP_07687588.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 145-7]
 gi|312973460|ref|ZP_07787632.1| NADH-quinone oxidoreductase, chain I family protein [Escherichia
           coli 1827-70]
 gi|331642919|ref|ZP_08344054.1| NADH-quinone oxidoreductase subunit I [Escherichia coli H736]
 gi|331647936|ref|ZP_08349028.1| NADH-quinone oxidoreductase subunit I [Escherichia coli M605]
 gi|331653723|ref|ZP_08354724.1| NADH-quinone oxidoreductase subunit I [Escherichia coli M718]
 gi|331663795|ref|ZP_08364705.1| NADH-quinone oxidoreductase subunit I [Escherichia coli TA143]
 gi|331668979|ref|ZP_08369827.1| NADH-quinone oxidoreductase subunit I [Escherichia coli TA271]
 gi|331673786|ref|ZP_08374549.1| NADH-quinone oxidoreductase subunit I [Escherichia coli TA280]
 gi|331678227|ref|ZP_08378902.1| NADH-quinone oxidoreductase subunit I [Escherichia coli H591]
 gi|331683953|ref|ZP_08384549.1| NADH-quinone oxidoreductase subunit I [Escherichia coli H299]
 gi|332278573|ref|ZP_08390986.1| NADH-quinone oxidoreductase subunit I [Shigella sp. D9]
 gi|84028753|sp|P0AFD8|NUOI_ECO57 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I; AltName: Full=NUO9
 gi|84028754|sp|P0AFD7|NUOI_ECOL6 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I; AltName: Full=NUO9
 gi|84028755|sp|P0AFD6|NUOI_ECOLI RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I; AltName: Full=NUO9
 gi|84028756|sp|P0AFD9|NUOI_SHIFL RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I; AltName: Full=NUO9
 gi|110287772|sp|Q31YI0|NUOI_SHIBS RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|115502527|sp|Q1R9D6|NUOI_ECOUT RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|123147879|sp|Q0TFG5|NUOI_ECOL5 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|123342668|sp|Q0T2K6|NUOI_SHIF8 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|156633517|sp|A1ADC9|NUOI_ECOK1 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|12516631|gb|AAG57410.1|AE005460_4 NADH dehydrogenase I chain I [Escherichia coli O157:H7 str. EDL933]
 gi|26109073|gb|AAN81276.1|AE016763_235 NADH dehydrogenase I chain I [Escherichia coli CFT073]
 gi|1788617|gb|AAC75341.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli str. K-12
           substr. MG1655]
 gi|13362635|dbj|BAB36588.1| NADH dehydrogenase I chain I [Escherichia coli O157:H7 str. Sakai]
 gi|24052717|gb|AAN43870.1| NADH dehydrogenase I chain I [Shigella flexneri 2a str. 301]
 gi|30041962|gb|AAP17688.1| NADH dehydrogenase I chain I [Shigella flexneri 2a str. 2457T]
 gi|81246170|gb|ABB66878.1| NADH dehydrogenase I chain I [Shigella boydii Sb227]
 gi|85675342|dbj|BAA16109.2| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli str. K12
           substr. W3110]
 gi|91073147|gb|ABE08028.1| NADH dehydrogenase I chain I [Escherichia coli UTI89]
 gi|110344077|gb|ABG70314.1| NADH dehydrogenase I chain I [Escherichia coli 536]
 gi|110615792|gb|ABF04459.1| NADH dehydrogenase I chain I [Shigella flexneri 5 str. 8401]
 gi|115513594|gb|ABJ01669.1| NADH dehydrogenase I chain I [Escherichia coli APEC O1]
 gi|157067449|gb|ABV06704.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli HS]
 gi|157079585|gb|ABV19293.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli E24377A]
 gi|169754338|gb|ACA77037.1| NADH-quinone oxidoreductase, chain I [Escherichia coli ATCC 8739]
 gi|169889733|gb|ACB03440.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli str. K-12
           substr. DH10B]
 gi|170123921|gb|EDS92852.1| NADH-quinone oxidoreductase, I subunit [Escherichia albertii
           TW07627]
 gi|170518794|gb|ACB16972.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli SMS-3-5]
 gi|187428661|gb|ACD07935.1| NADH-quinone oxidoreductase, I subunit [Shigella boydii CDC
           3083-94]
 gi|187771242|gb|EDU35086.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4196]
 gi|188017199|gb|EDU55321.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4113]
 gi|188488883|gb|EDU63986.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli 53638]
 gi|189002016|gb|EDU71002.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4076]
 gi|189357566|gb|EDU75985.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4401]
 gi|189362978|gb|EDU81397.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4486]
 gi|189368249|gb|EDU86665.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4501]
 gi|189372827|gb|EDU91243.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC869]
 gi|189379037|gb|EDU97453.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC508]
 gi|190903434|gb|EDV63153.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli B7A]
 gi|190909675|gb|EDV69260.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli F11]
 gi|192931901|gb|EDV84500.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli E22]
 gi|192958438|gb|EDV88877.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli E110019]
 gi|194414797|gb|EDX31068.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli B171]
 gi|194418427|gb|EDX34516.1| NADH-quinone oxidoreductase, I subunit [Shigella dysenteriae 1012]
 gi|194425082|gb|EDX41067.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli 101-1]
 gi|208725459|gb|EDZ75060.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4206]
 gi|208735358|gb|EDZ84045.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4045]
 gi|208738721|gb|EDZ86403.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4042]
 gi|209160574|gb|ACI38007.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. EC4115]
 gi|209765138|gb|ACI80881.1| NADH dehydrogenase I chain I [Escherichia coli]
 gi|209765140|gb|ACI80882.1| NADH dehydrogenase I chain I [Escherichia coli]
 gi|209765142|gb|ACI80883.1| NADH dehydrogenase I chain I [Escherichia coli]
 gi|209765144|gb|ACI80884.1| NADH dehydrogenase I chain I [Escherichia coli]
 gi|209765146|gb|ACI80885.1| NADH dehydrogenase I chain I [Escherichia coli]
 gi|209912988|dbj|BAG78062.1| NADH dehydrogenase I chain I [Escherichia coli SE11]
 gi|215265566|emb|CAS09969.1| NADH: ubiquinone oxidoreductase, chain I [Escherichia coli O127:H6
           str. E2348/69]
 gi|217319113|gb|EEC27538.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7
           str. TW14588]
 gi|218352612|emb|CAU98393.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli 55989]
 gi|218355811|emb|CAQ88424.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia fergusonii
           ATCC 35469]
 gi|218361605|emb|CAQ99197.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli IAI1]
 gi|218365963|emb|CAR03707.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli S88]
 gi|218370741|emb|CAR18554.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli IAI39]
 gi|218428005|emb|CAR08776.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli ED1a]
 gi|218432908|emb|CAR13802.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli UMN026]
 gi|222034037|emb|CAP76778.1| NadH-quinone oxidoreductase subunit I [Escherichia coli LF82]
 gi|226901121|gb|EEH87380.1| NADH:ubiquinone oxidoreductase [Escherichia sp. 3_2_53FAA]
 gi|227835687|gb|EEJ46153.1| NADH dehydrogenase subunit I [Escherichia coli 83972]
 gi|238861872|gb|ACR63870.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli BW2952]
 gi|242377914|emb|CAQ32683.1| NADH:ubiquinone oxidoreductase, chain I, subunit of connecting
           fragment of NADH dehydrogenase I and NADH:ubiquinone
           oxidoreductase I [Escherichia coli BL21(DE3)]
 gi|253323841|gb|ACT28443.1| NADH-quinone oxidoreductase, chain I [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974191|gb|ACT39862.1| NADH dehydrogenase subunit I [Escherichia coli B str. REL606]
 gi|253978358|gb|ACT44028.1| NADH dehydrogenase subunit I [Escherichia coli BL21(DE3)]
 gi|254593573|gb|ACT72934.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli O157:H7
           str. TW14359]
 gi|257754974|dbj|BAI26476.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli O26:H11
           str. 11368]
 gi|257760015|dbj|BAI31512.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli O103:H2
           str. 12009]
 gi|257765360|dbj|BAI36855.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli O111:H-
           str. 11128]
 gi|260448626|gb|ACX39048.1| NADH-quinone oxidoreductase, chain I [Escherichia coli DH1]
 gi|281179368|dbj|BAI55698.1| NADH dehydrogenase I chain I [Escherichia coli SE15]
 gi|281601722|gb|ADA74706.1| NADH-quinone oxidoreductase subunit I [Shigella flexneri 2002017]
 gi|284922269|emb|CBG35354.1| NADH-quinone oxidoreductase subunit I [Escherichia coli 042]
 gi|290763395|gb|ADD57356.1| NADH-quinone oxidoreductase subunit I [Escherichia coli O55:H7 str.
           CB9615]
 gi|291323448|gb|EFE62876.1| NADH dehydrogenase I subunit I [Escherichia coli B088]
 gi|291427955|gb|EFF00982.1| NADH-quinone oxidoreductase [Escherichia coli FVEC1412]
 gi|291433222|gb|EFF06201.1| NADH dehydrogenase I subunit I [Escherichia coli B185]
 gi|291471109|gb|EFF13593.1| conserved hypothetical protein [Escherichia coli B354]
 gi|294489898|gb|ADE88654.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli IHE3034]
 gi|298278872|gb|EFI20386.1| NADH-quinone oxidoreductase subunit I [Escherichia coli FVEC1302]
 gi|299879498|gb|EFI87709.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 196-1]
 gi|300299143|gb|EFJ55528.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 185-1]
 gi|300307690|gb|EFJ62210.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 200-1]
 gi|300316729|gb|EFJ66513.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 175-1]
 gi|300359223|gb|EFJ75093.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 198-1]
 gi|300396735|gb|EFJ80273.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 69-1]
 gi|300404322|gb|EFJ87860.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 84-1]
 gi|300408542|gb|EFJ92080.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 45-1]
 gi|300414289|gb|EFJ97599.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 115-1]
 gi|300419258|gb|EFK02569.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 182-1]
 gi|300451923|gb|EFK15543.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 116-1]
 gi|300458032|gb|EFK21525.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 21-1]
 gi|300460828|gb|EFK24321.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 187-1]
 gi|300525282|gb|EFK46351.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 119-7]
 gi|300529263|gb|EFK50325.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 107-1]
 gi|300841434|gb|EFK69194.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 124-1]
 gi|300844835|gb|EFK72595.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 78-1]
 gi|301074249|gb|EFK89055.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 146-1]
 gi|305852002|gb|EFM52454.1| NADH dehydrogenase subunit I [Escherichia coli NC101]
 gi|306908665|gb|EFN39162.1| NADH-quinone oxidoreductase, chain I [Escherichia coli W]
 gi|307554343|gb|ADN47118.1| NADH dehydrogenase I chain I [Escherichia coli ABU 83972]
 gi|307626183|gb|ADN70487.1| NADH dehydrogenase subunit I [Escherichia coli UM146]
 gi|308123446|gb|EFO60708.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 145-7]
 gi|309702593|emb|CBJ01921.1| NADH-quinone oxidoreductase subunit I [Escherichia coli ETEC
           H10407]
 gi|310332055|gb|EFP99290.1| NADH-quinone oxidoreductase, chain I family protein [Escherichia
           coli 1827-70]
 gi|312946899|gb|ADR27726.1| NADH dehydrogenase subunit I [Escherichia coli O83:H1 str. NRG
           857C]
 gi|313651104|gb|EFS15503.1| NADH-quinone oxidoreductase, chain I family protein [Shigella
           flexneri 2a str. 2457T]
 gi|315061573|gb|ADT75900.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli W]
 gi|315136915|dbj|BAJ44074.1| NADH-quinone oxidoreductase subunit I [Escherichia coli DH1]
 gi|315255215|gb|EFU35183.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 85-1]
 gi|315285919|gb|EFU45357.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 110-3]
 gi|315292246|gb|EFU51598.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 153-1]
 gi|315298120|gb|EFU57389.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 16-3]
 gi|320177163|gb|EFW52175.1| NADH-ubiquinone oxidoreductase chain I [Shigella dysenteriae CDC
           74-1112]
 gi|320178746|gb|EFW53709.1| NADH-ubiquinone oxidoreductase chain I [Shigella boydii ATCC 9905]
 gi|320183376|gb|EFW58228.1| NADH-ubiquinone oxidoreductase chain I [Shigella flexneri CDC
           796-83]
 gi|320192098|gb|EFW66743.1| NADH-ubiquinone oxidoreductase chain I [Escherichia coli O157:H7
           str. EC1212]
 gi|320196148|gb|EFW70772.1| NADH-ubiquinone oxidoreductase chain I [Escherichia coli WV_060327]
 gi|320199869|gb|EFW74458.1| NADH-ubiquinone oxidoreductase chain I [Escherichia coli EC4100B]
 gi|320641108|gb|EFX10587.1| NADH dehydrogenase subunit I [Escherichia coli O157:H7 str. G5101]
 gi|320646496|gb|EFX15415.1| NADH dehydrogenase subunit I [Escherichia coli O157:H- str. 493-89]
 gi|320651593|gb|EFX19973.1| NADH dehydrogenase subunit I [Escherichia coli O157:H- str. H 2687]
 gi|320657345|gb|EFX25147.1| NADH dehydrogenase subunit I [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320663047|gb|EFX30364.1| NADH dehydrogenase subunit I [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320667865|gb|EFX34773.1| NADH dehydrogenase subunit I [Escherichia coli O157:H7 str. LSU-61]
 gi|323156431|gb|EFZ42586.1| NADH-quinone oxidoreductase, chain I family protein [Escherichia
           coli EPECa14]
 gi|323161615|gb|EFZ47500.1| NADH-quinone oxidoreductase, chain I family protein [Escherichia
           coli E128010]
 gi|323171962|gb|EFZ57606.1| NADH-quinone oxidoreductase, chain I family protein [Escherichia
           coli LT-68]
 gi|323176794|gb|EFZ62384.1| NADH-quinone oxidoreductase, chain I family protein [Escherichia
           coli 1180]
 gi|323184400|gb|EFZ69776.1| NADH-quinone oxidoreductase, chain I family protein [Escherichia
           coli 1357]
 gi|323187994|gb|EFZ73289.1| NADH-quinone oxidoreductase, chain I family protein [Escherichia
           coli RN587/1]
 gi|323377847|gb|ADX50115.1| NADH-quinone oxidoreductase, chain I [Escherichia coli KO11]
 gi|323936571|gb|EGB32858.1| NADH-quinone oxidoreductase [Escherichia coli E1520]
 gi|323941022|gb|EGB37209.1| NADH-quinone oxidoreductase [Escherichia coli E482]
 gi|323944794|gb|EGB40860.1| NADH-quinone oxidoreductase [Escherichia coli H120]
 gi|323952074|gb|EGB47948.1| NADH-quinone oxidoreductase [Escherichia coli H252]
 gi|323956047|gb|EGB51800.1| NADH-quinone oxidoreductase [Escherichia coli H263]
 gi|323961464|gb|EGB57074.1| NADH-quinone oxidoreductase [Escherichia coli H489]
 gi|323967722|gb|EGB63134.1| NADH-quinone oxidoreductase [Escherichia coli M863]
 gi|323973014|gb|EGB68208.1| NADH-quinone oxidoreductase [Escherichia coli TA007]
 gi|323977518|gb|EGB72604.1| NADH-quinone oxidoreductase [Escherichia coli TW10509]
 gi|324006669|gb|EGB75888.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 57-2]
 gi|324013179|gb|EGB82398.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 60-1]
 gi|324020877|gb|EGB90096.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 117-3]
 gi|324112813|gb|EGC06789.1| NADH-quinone oxidoreductase [Escherichia fergusonii B253]
 gi|324117841|gb|EGC11740.1| NADH-quinone oxidoreductase [Escherichia coli E1167]
 gi|325496684|gb|EGC94543.1| NADH dehydrogenase subunit I [Escherichia fergusonii ECD227]
 gi|326339632|gb|EGD63443.1| NADH-ubiquinone oxidoreductase chain I [Escherichia coli O157:H7
           str. 1125]
 gi|326344094|gb|EGD67855.1| NADH-ubiquinone oxidoreductase chain I [Escherichia coli O157:H7
           str. 1044]
 gi|327252551|gb|EGE64210.1| NADH-quinone oxidoreductase, chain I family protein [Escherichia
           coli STEC_7v]
 gi|330912106|gb|EGH40616.1| NADH-ubiquinone oxidoreductase chain 1 [Escherichia coli AA86]
 gi|331039717|gb|EGI11937.1| NADH-quinone oxidoreductase subunit I [Escherichia coli H736]
 gi|331043660|gb|EGI15798.1| NADH-quinone oxidoreductase subunit I [Escherichia coli M605]
 gi|331048572|gb|EGI20648.1| NADH-quinone oxidoreductase subunit I [Escherichia coli M718]
 gi|331059594|gb|EGI31571.1| NADH-quinone oxidoreductase subunit I [Escherichia coli TA143]
 gi|331064173|gb|EGI36084.1| NADH-quinone oxidoreductase subunit I [Escherichia coli TA271]
 gi|331069059|gb|EGI40451.1| NADH-quinone oxidoreductase subunit I [Escherichia coli TA280]
 gi|331074687|gb|EGI46007.1| NADH-quinone oxidoreductase subunit I [Escherichia coli H591]
 gi|331078905|gb|EGI50107.1| NADH-quinone oxidoreductase subunit I [Escherichia coli H299]
 gi|332088411|gb|EGI93529.1| NADH-quinone oxidoreductase, chain I family protein [Shigella
           boydii 5216-82]
 gi|332090608|gb|EGI95704.1| NADH-quinone oxidoreductase, chain I family protein [Shigella
           dysenteriae 155-74]
 gi|332093681|gb|EGI98739.1| NADH-quinone oxidoreductase, chain I family protein [Shigella
           boydii 3594-74]
 gi|332100925|gb|EGJ04271.1| NADH-quinone oxidoreductase subunit I [Shigella sp. D9]
 gi|332344062|gb|AEE57396.1| NADH-quinone oxidoreductase, chain I [Escherichia coli UMNK88]
 gi|332755330|gb|EGJ85694.1| NADH-quinone oxidoreductase, chain I family protein [Shigella
           flexneri K-671]
 gi|332756322|gb|EGJ86673.1| NADH-quinone oxidoreductase, chain I family protein [Shigella
           flexneri 2747-71]
 gi|332766100|gb|EGJ96310.1| nuoI [Shigella flexneri 2930-71]
 gi|333001425|gb|EGK20993.1| NADH-quinone oxidoreductase, chain I family protein [Shigella
           flexneri VA-6]
 gi|333001967|gb|EGK21533.1| NADH-quinone oxidoreductase, chain I family protein [Shigella
           flexneri K-218]
 gi|333002648|gb|EGK22208.1| NADH-quinone oxidoreductase, chain I family protein [Shigella
           flexneri K-272]
 gi|333016230|gb|EGK35561.1| NADH-quinone oxidoreductase, chain I family protein [Shigella
           flexneri K-304]
 gi|333016532|gb|EGK35862.1| NADH-quinone oxidoreductase, chain I family protein [Shigella
           flexneri K-227]
          Length = 180

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 56/142 (39%), Positives = 76/142 (53%), Gaps = 8/142 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LKE +  F   +R       + F  + T  YP E     PR+RG   L R P+GEERC
Sbjct: 1   MTLKELLVGFGTQVRSIWMIGLHAFAKRETRMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC   CP   I+++      DG      + I+  +CI+CGLC+EACP  AI   P+
Sbjct: 61  VACNLCAVACPVGCISLQKAE-TKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119

Query: 124 FEFATETRQELYYDKERLLNNG 145
           FE     RQ+L Y+KE LL +G
Sbjct: 120 FEMGEYKRQDLVYEKEDLLISG 141


>gi|74312799|ref|YP_311218.1| NADH dehydrogenase subunit I [Shigella sonnei Ss046]
 gi|110287774|sp|Q3YZS9|NUOI_SHISS RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|73856276|gb|AAZ88983.1| NADH dehydrogenase I chain I [Shigella sonnei Ss046]
 gi|323168550|gb|EFZ54230.1| NADH-quinone oxidoreductase, chain I family protein [Shigella
           sonnei 53G]
          Length = 180

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 56/142 (39%), Positives = 76/142 (53%), Gaps = 8/142 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LKE +  F   +R       + F  + T  YP E     PR+RG   L R P+GEERC
Sbjct: 1   MTLKELLVGFGTQVRSIWMIGLHAFAKRETRMYPEEPIYLPPRYRGRIVLTRDPDGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC   CP   I+++      DG      + I+  +CI+CGLC+EACP  AI   P+
Sbjct: 61  VACNLCAVACPVGCISLQKAE-TKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119

Query: 124 FEFATETRQELYYDKERLLNNG 145
           FE     RQ+L Y+KE LL +G
Sbjct: 120 FEMGEYKRQDLVYEKEDLLISG 141


>gi|328950039|ref|YP_004367374.1| NAD(P)H-quinone oxidoreductase subunit I [Marinithermus
           hydrothermalis DSM 14884]
 gi|328450363|gb|AEB11264.1| NAD(P)H-quinone oxidoreductase subunit I [Marinithermus
           hydrothermalis DSM 14884]
          Length = 176

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 55/146 (37%), Positives = 78/146 (53%), Gaps = 7/146 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +  + L++ F    TI YP       PR++G H L R+PNG E+CI C LC A+CPA
Sbjct: 6   LAKSLGITLKHLFSKPVTIPYPDAPVPLKPRYKGRHVLTRHPNGLEKCIGCSLCAAVCPA 65

Query: 76  QAITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
            AI +E+     +     G R    Y+I+M++CI+CGLC+EACP  A+V G  FE A   
Sbjct: 66  YAIYVEAAENDPENPVSAGERYAKVYEINMLRCIFCGLCEEACPTGAVVLGNEFEMADYR 125

Query: 131 RQELYYDKERLL--NNGDRWESEIVR 154
             +  Y KE +L    G + +    R
Sbjct: 126 YSDHIYSKEDMLVEVVGSKPQRREAR 151


>gi|304311502|ref|YP_003811100.1| NADH dehydrogenase I, chain I [gamma proteobacterium HdN1]
 gi|301797235|emb|CBL45455.1| NADH dehydrogenase I, chain I [gamma proteobacterium HdN1]
          Length = 185

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 54/129 (41%), Positives = 77/129 (59%), Gaps = 1/129 (0%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           + + +    + F  + TI+YP +     PR+RG   L R P+GEERC+AC LC A CPAQ
Sbjct: 19  LVSMYEVFMHSFAKRDTISYPEQPVYLPPRYRGRIVLTRDPDGEERCVACNLCAAACPAQ 78

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
            I+++   R   G      + I+  +CI+CG+C+EACP  AI   P+FE A   RQ+L Y
Sbjct: 79  CISLQKAERDD-GRWYPEFFRINFSRCIFCGMCEEACPTTAIQLTPDFEMAEFRRQDLVY 137

Query: 137 DKERLLNNG 145
           +KE LL +G
Sbjct: 138 EKEDLLISG 146


>gi|296112939|ref|YP_003626877.1| NADH-quinone oxidoreductase subunit I [Moraxella catarrhalis RH4]
 gi|295920633|gb|ADG60984.1| NADH-quinone oxidoreductase subunit I [Moraxella catarrhalis RH4]
          Length = 182

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 50/133 (37%), Positives = 74/133 (55%), Gaps = 1/133 (0%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           +   V + ++   +  + + TI YP +     PRFRG   L R P+G+ERC+AC LC   
Sbjct: 12  MFTIVHSMWMVNSHALRPRDTILYPEQPVPVPPRFRGRIVLTRDPDGDERCVACNLCAVA 71

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           CP   I+++   R  DG      + I+  +C++CG+C+EACP  AI   P+FE     RQ
Sbjct: 72  CPVGCISLQKAER-EDGRWYPEFFRINFSRCVFCGMCEEACPTTAIQLTPDFELGEYDRQ 130

Query: 133 ELYYDKERLLNNG 145
            L Y+KE LL +G
Sbjct: 131 NLVYEKEHLLISG 143


>gi|294140408|ref|YP_003556386.1| NADH dehydrogenase I subunit I [Shewanella violacea DSS12]
 gi|293326877|dbj|BAJ01608.1| NADH dehydrogenase I, I subunit [Shewanella violacea DSS12]
          Length = 184

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 54/144 (37%), Positives = 76/144 (52%), Gaps = 2/144 (1%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
            I+     ++ L +      + L++ F    T+ YP +K   SPR+RG   L R P+GEE
Sbjct: 4   NIWFLTGEWIMLSQIRTLIAI-LKHTFTPAYTVQYPEQKPYLSPRYRGRIVLTRDPDGEE 62

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RC+AC LC   CP   I++E   +   G      + I+  +CI CG C+EACP  AI   
Sbjct: 63  RCVACNLCSVACPVDCISVEKTEKPD-GRWEAKTFTINFSRCIMCGFCEEACPTHAIQLT 121

Query: 122 PNFEFATETRQELYYDKERLLNNG 145
           P+FE A   RQ L Y+K  LL +G
Sbjct: 122 PDFEMAEYDRQNLVYEKHHLLISG 145


>gi|227497690|ref|ZP_03927899.1| NADH dehydrogenase (quinone) [Actinomyces urogenitalis DSM 15434]
 gi|226832867|gb|EEH65250.1| NADH dehydrogenase (quinone) [Actinomyces urogenitalis DSM 15434]
          Length = 232

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 48/133 (36%), Positives = 67/133 (50%), Gaps = 6/133 (4%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  + + +   F+   T  YPF +    PR+ G H L RY +G ERCI C+LC   CPA 
Sbjct: 35  VAGYGVTISSIFRPTVTEQYPFVRPVLMPRYHGRHQLNRYDDGLERCIGCELCAWACPAD 94

Query: 77  AITIESGPRCH-----DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF-EFATET 130
           AI +E+           G R    Y I+ ++CI+CG+C EACP  A+       E    +
Sbjct: 95  AIYVEAASNAPGAQYSPGERYGRVYQINYLRCIFCGMCIEACPTRALTMTHEIDELVGPS 154

Query: 131 RQELYYDKERLLN 143
           R  L Y+K+ LL 
Sbjct: 155 RGGLIYEKQDLLA 167


>gi|157144788|ref|YP_001452107.1| NADH dehydrogenase subunit I [Citrobacter koseri ATCC BAA-895]
 gi|157081993|gb|ABV11671.1| hypothetical protein CKO_00515 [Citrobacter koseri ATCC BAA-895]
          Length = 180

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 55/142 (38%), Positives = 75/142 (52%), Gaps = 8/142 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LKE +  F   +R       + F  + T  YP E     PR+RG   L R P+GEERC
Sbjct: 1   MTLKELLVGFGTQVRSIWMIGLHAFAKRETQMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC   CP   I+++       G      + I+  +CI+CGLC+EACP  AI   P+
Sbjct: 61  VACNLCAVACPVGCISLQKAEMKD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119

Query: 124 FEFATETRQELYYDKERLLNNG 145
           FE     RQ+L Y+KE LL +G
Sbjct: 120 FEMGEYKRQDLVYEKEDLLISG 141


>gi|157371538|ref|YP_001479527.1| NADH dehydrogenase subunit I [Serratia proteamaculans 568]
 gi|270262807|ref|ZP_06191078.1| NADH-quinone oxidoreductase subunit I [Serratia odorifera 4Rx13]
 gi|157323302|gb|ABV42399.1| NADH-quinone oxidoreductase, chain I [Serratia proteamaculans 568]
 gi|270043491|gb|EFA16584.1| NADH-quinone oxidoreductase subunit I [Serratia odorifera 4Rx13]
          Length = 180

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 55/142 (38%), Positives = 76/142 (53%), Gaps = 8/142 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LKE +  F   +R       + F  + T  YP E     PR+RG   L R P+GEERC
Sbjct: 1   MTLKELLVGFGTQVRSIWMIGLHAFAKRETQMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC   CP   I+++   +   G      + I+  +CI+CGLC+EACP  AI   P+
Sbjct: 61  VACNLCAVACPVGCISLQKAEQKD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119

Query: 124 FEFATETRQELYYDKERLLNNG 145
           FE     RQ+L Y+KE LL +G
Sbjct: 120 FEMGEFKRQDLVYEKEDLLISG 141


>gi|329296025|ref|ZP_08253361.1| NADH dehydrogenase subunit I [Plautia stali symbiont]
          Length = 180

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 54/140 (38%), Positives = 73/140 (52%), Gaps = 8/140 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LK+ V  F   +R       + F  + T  YP E     PR+RG   L R P+GEERC
Sbjct: 1   MTLKDIVVGFGTTVRSIWMIGMHAFAKRETQMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC   CP   I+++       G      + I+  +CI+CGLC+EACP  AI   P+
Sbjct: 61  VACNLCAVACPVGCISLQKAEMQD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119

Query: 124 FEFATETRQELYYDKERLLN 143
           FE     RQ+L Y+KE LL 
Sbjct: 120 FELGEFKRQDLVYEKEDLLI 139


>gi|238759969|ref|ZP_04621122.1| NADH-quinone oxidoreductase subunit I [Yersinia aldovae ATCC 35236]
 gi|238701796|gb|EEP94360.1| NADH-quinone oxidoreductase subunit I [Yersinia aldovae ATCC 35236]
          Length = 180

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 56/142 (39%), Positives = 75/142 (52%), Gaps = 8/142 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LKE V  F   +R       + F  + T  YP E     PR+RG   L R P+GEERC
Sbjct: 1   MTLKELVVGFGTQVRSLWMIGLHAFHKRETQMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC   CP   I+++       G      + I+  +CI+CGLC+EACP  AI   P+
Sbjct: 61  VACNLCAVACPVGCISLQKAEHQD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119

Query: 124 FEFATETRQELYYDKERLLNNG 145
           FE     RQ+L Y+KE LL +G
Sbjct: 120 FEMGEFKRQDLVYEKEDLLISG 141


>gi|22125532|ref|NP_668955.1| NADH dehydrogenase subunit I [Yersinia pestis KIM 10]
 gi|45442148|ref|NP_993687.1| NADH dehydrogenase subunit I [Yersinia pestis biovar Microtus str.
           91001]
 gi|51596899|ref|YP_071090.1| NADH dehydrogenase subunit I [Yersinia pseudotuberculosis IP 32953]
 gi|108808035|ref|YP_651951.1| NADH dehydrogenase subunit I [Yersinia pestis Antiqua]
 gi|108812305|ref|YP_648072.1| NADH dehydrogenase subunit I [Yersinia pestis Nepal516]
 gi|145599238|ref|YP_001163314.1| NADH dehydrogenase subunit I [Yersinia pestis Pestoides F]
 gi|149365546|ref|ZP_01887581.1| NADH Dehydrogenase I chain I [Yersinia pestis CA88-4125]
 gi|153950602|ref|YP_001400439.1| NADH dehydrogenase subunit I [Yersinia pseudotuberculosis IP 31758]
 gi|162421132|ref|YP_001606298.1| NADH dehydrogenase subunit I [Yersinia pestis Angola]
 gi|165925636|ref|ZP_02221468.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165937677|ref|ZP_02226239.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008508|ref|ZP_02229406.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166213832|ref|ZP_02239867.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167399268|ref|ZP_02304792.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167422344|ref|ZP_02314097.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167424548|ref|ZP_02316301.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167470944|ref|ZP_02335648.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis FV-1]
 gi|170023808|ref|YP_001720313.1| NADH dehydrogenase subunit I [Yersinia pseudotuberculosis YPIII]
 gi|186895980|ref|YP_001873092.1| NADH dehydrogenase subunit I [Yersinia pseudotuberculosis PB1/+]
 gi|218929634|ref|YP_002347509.1| NADH dehydrogenase subunit I [Yersinia pestis CO92]
 gi|229838090|ref|ZP_04458249.1| NADH:ubiquinone oxidoreductase, chain I [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229895289|ref|ZP_04510463.1| NADH:ubiquinone oxidoreductase, chain I [Yersinia pestis Pestoides
           A]
 gi|229898650|ref|ZP_04513795.1| NADH:ubiquinone oxidoreductase, chain I [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229902649|ref|ZP_04517766.1| NADH:ubiquinone oxidoreductase, chain I [Yersinia pestis Nepal516]
 gi|270490170|ref|ZP_06207244.1| NADH-quinone oxidoreductase, chain I [Yersinia pestis KIM D27]
 gi|294504362|ref|YP_003568424.1| NADH dehydrogenase subunit I [Yersinia pestis Z176003]
 gi|81639048|sp|Q669A7|NUOI_YERPS RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|123072748|sp|Q1C6B6|NUOI_YERPA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|123073347|sp|Q1CHQ8|NUOI_YERPN RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|123777027|sp|Q7CJ89|NUOI_YERPE RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|156633544|sp|A4TM29|NUOI_YERPP RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|254772597|sp|A7FGR1|NUOI_YERP3 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|254772598|sp|B2K814|NUOI_YERPB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|254772599|sp|A9R6L4|NUOI_YERPG RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|254772600|sp|B1JGM0|NUOI_YERPY RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|21958432|gb|AAM85206.1|AE013767_3 NADH dehydrogenase I chain I [Yersinia pestis KIM 10]
 gi|45437012|gb|AAS62564.1| NADH Dehydrogenase I chain I [Yersinia pestis biovar Microtus str.
           91001]
 gi|51590181|emb|CAH21818.1| NADH dehydrogenase I chain I [Yersinia pseudotuberculosis IP 32953]
 gi|108775953|gb|ABG18472.1| NADH Dehydrogenase I chain I [Yersinia pestis Nepal516]
 gi|108779948|gb|ABG14006.1| NADH Dehydrogenase I chain I [Yersinia pestis Antiqua]
 gi|115348245|emb|CAL21173.1| NADH Dehydrogenase I chain I [Yersinia pestis CO92]
 gi|145210934|gb|ABP40341.1| NADH Dehydrogenase I chain I [Yersinia pestis Pestoides F]
 gi|149291959|gb|EDM42033.1| NADH Dehydrogenase I chain I [Yersinia pestis CA88-4125]
 gi|152962097|gb|ABS49558.1| NADH-quinone oxidoreductase, I subunit [Yersinia pseudotuberculosis
           IP 31758]
 gi|162353947|gb|ABX87895.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis Angola]
 gi|165914427|gb|EDR33042.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165922745|gb|EDR39896.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992890|gb|EDR45191.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166205006|gb|EDR49486.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166958850|gb|EDR55871.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167051772|gb|EDR63180.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167056430|gb|EDR66199.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169750342|gb|ACA67860.1| NADH-quinone oxidoreductase, chain I [Yersinia pseudotuberculosis
           YPIII]
 gi|186699006|gb|ACC89635.1| NADH-quinone oxidoreductase, chain I [Yersinia pseudotuberculosis
           PB1/+]
 gi|229680096|gb|EEO76195.1| NADH:ubiquinone oxidoreductase, chain I [Yersinia pestis Nepal516]
 gi|229688198|gb|EEO80269.1| NADH:ubiquinone oxidoreductase, chain I [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229694456|gb|EEO84503.1| NADH:ubiquinone oxidoreductase, chain I [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229701775|gb|EEO89800.1| NADH:ubiquinone oxidoreductase, chain I [Yersinia pestis Pestoides
           A]
 gi|262362649|gb|ACY59370.1| NADH dehydrogenase subunit I [Yersinia pestis D106004]
 gi|262366278|gb|ACY62835.1| NADH dehydrogenase subunit I [Yersinia pestis D182038]
 gi|270338674|gb|EFA49451.1| NADH-quinone oxidoreductase, chain I [Yersinia pestis KIM D27]
 gi|294354821|gb|ADE65162.1| NADH dehydrogenase subunit I [Yersinia pestis Z176003]
 gi|320014614|gb|ADV98185.1| NADH:ubiquinone oxidoreductase, chain I [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 180

 Score =  125 bits (315), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 56/142 (39%), Positives = 77/142 (54%), Gaps = 8/142 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LKE V  F   +R       + F  + T+ YP E     PR+RG   L R P+GEERC
Sbjct: 1   MTLKELVVGFGTQVRSLWMIGLHAFHKRETLMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC   CP   I+++   +   G      + I+  +CI+CGLC+EACP  AI   P+
Sbjct: 61  VACNLCAVACPVGCISLQKAEQKD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119

Query: 124 FEFATETRQELYYDKERLLNNG 145
           FE     RQ+L Y+KE LL +G
Sbjct: 120 FEMGEFKRQDLVYEKEDLLISG 141


>gi|290475910|ref|YP_003468805.1| NADH dehydrogenase I subunit I, 2Fe-2S ferredoxin-related
           [Xenorhabdus bovienii SS-2004]
 gi|289175238|emb|CBJ82041.1| NADH dehydrogenase I chain I, 2Fe-2S ferredoxin-related
           [Xenorhabdus bovienii SS-2004]
          Length = 180

 Score =  125 bits (315), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 57/142 (40%), Positives = 77/142 (54%), Gaps = 8/142 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LKE V  F   +R       + F  + T  YP E     PR+RG   L R P+GEERC
Sbjct: 1   MTLKELVVGFATQVRSIWMIGLHAFHKRETKMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC A+CP   I+++       G      + I+  +CI+CGLC+EACP  AI   P+
Sbjct: 61  VACNLCAAVCPVGCISLQKAEHKD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119

Query: 124 FEFATETRQELYYDKERLLNNG 145
           FE     RQ+L Y+KE LL +G
Sbjct: 120 FELGEFKRQDLVYEKEDLLISG 141


>gi|238798411|ref|ZP_04641892.1| NADH-quinone oxidoreductase subunit I [Yersinia mollaretii ATCC
           43969]
 gi|238717725|gb|EEQ09560.1| NADH-quinone oxidoreductase subunit I [Yersinia mollaretii ATCC
           43969]
          Length = 180

 Score =  125 bits (315), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 56/142 (39%), Positives = 76/142 (53%), Gaps = 8/142 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LKE V  F   +R       + F  + T  YP E     PR+RG   L R P+GEERC
Sbjct: 1   MTLKELVVGFGTQVRSLWMIGLHAFHKRETQMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC   CP   I+++   +   G      + I+  +CI+CGLC+EACP  AI   P+
Sbjct: 61  VACNLCAVACPVGCISLQKAEQKD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119

Query: 124 FEFATETRQELYYDKERLLNNG 145
           FE     RQ+L Y+KE LL +G
Sbjct: 120 FEMGEFKRQDLVYEKEDLLISG 141


>gi|82777689|ref|YP_404038.1| NADH dehydrogenase subunit I [Shigella dysenteriae Sd197]
 gi|110287773|sp|Q32DQ8|NUOI_SHIDS RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|81241837|gb|ABB62547.1| NADH dehydrogenase I chain I [Shigella dysenteriae Sd197]
          Length = 180

 Score =  125 bits (315), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 56/142 (39%), Positives = 76/142 (53%), Gaps = 8/142 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LKE +  F   +R       + F  + T  YP E     PR+RG   L R P+GEERC
Sbjct: 1   MTLKELLVGFGTQVRSIWMIGLHAFAKRETRMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC   CP   I+++      DG      + I+  +CI+CGLC+EACP  AI   P+
Sbjct: 61  VACNLCAVACPVGCISLQKTE-TKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119

Query: 124 FEFATETRQELYYDKERLLNNG 145
           FE     RQ+L Y+KE LL +G
Sbjct: 120 FEMGEYKRQDLVYEKEDLLISG 141


>gi|317492616|ref|ZP_07951043.1| NADH-quinone oxidoreductase [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316919366|gb|EFV40698.1| NADH-quinone oxidoreductase [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 180

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 57/142 (40%), Positives = 76/142 (53%), Gaps = 8/142 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LKE V  F   +R       + F  + T  YP E     PR+RG   L R P+GEERC
Sbjct: 1   MTLKELVVGFGTQVRSLWMIGLHAFAKRETQMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC   CP   I+++      DG      + I+  +CI+CGLC+EACP  AI   P+
Sbjct: 61  VACNLCAVACPVGCISLQKAE-TKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119

Query: 124 FEFATETRQELYYDKERLLNNG 145
           FE     RQ+L Y+KE LL +G
Sbjct: 120 FELGEFKRQDLVYEKEDLLISG 141


>gi|297565706|ref|YP_003684678.1| NADH-quinone oxidoreductase subunit I [Meiothermus silvanus DSM
           9946]
 gi|296850155|gb|ADH63170.1| NADH-quinone oxidoreductase, chain I [Meiothermus silvanus DSM
           9946]
          Length = 199

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 58/152 (38%), Positives = 78/152 (51%), Gaps = 10/152 (6%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +  + LR  F    TI YP       PR+ G H L R+PNG E+CI C LC AICPA
Sbjct: 7   LAQSLGITLRALFSKPVTIPYPDAPVPLKPRWHGRHVLTRHPNGLEKCIGCSLCAAICPA 66

Query: 76  QAITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
            AI +E            G R    Y+I+M++CI+CGLC+EACP  A+V G +FE A   
Sbjct: 67  YAIYVEPAENDPAHPTSAGERYAKVYEINMLRCIFCGLCEEACPTGAVVLGYDFEMADYR 126

Query: 131 RQELYYDKERLLNNGDRWESEIVRNIVTDSPY 162
             +L Y KE +L      E +  +    ++ Y
Sbjct: 127 YSDLIYGKEDMLV-----EVQGTKPQRREAVY 153


>gi|293395177|ref|ZP_06639463.1| NADH dehydrogenase I subunit I [Serratia odorifera DSM 4582]
 gi|291422354|gb|EFE95597.1| NADH dehydrogenase I subunit I [Serratia odorifera DSM 4582]
          Length = 180

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 56/142 (39%), Positives = 77/142 (54%), Gaps = 8/142 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LKE V  F   +R       + F  + T  YP E  +  PR+RG   L R P+GEERC
Sbjct: 1   MTLKELVVGFGTQVRSIWMIGLHAFAKRETRMYPEEPVNLPPRYRGRIVLTRDPDGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC   CP   I+++   +   G      + I+  +CI+CGLC+EACP  AI   P+
Sbjct: 61  VACNLCAVACPVGCISLQKAEQKD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119

Query: 124 FEFATETRQELYYDKERLLNNG 145
           FE     RQ+L Y+KE LL +G
Sbjct: 120 FEMGEFKRQDLVYEKEDLLISG 141


>gi|257054400|ref|YP_003132232.1| NADH dehydrogenase subunit I [Saccharomonospora viridis DSM 43017]
 gi|256584272|gb|ACU95405.1| NADH dehydrogenase subunit I [Saccharomonospora viridis DSM 43017]
          Length = 187

 Score =  125 bits (315), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 50/136 (36%), Positives = 70/136 (51%), Gaps = 5/136 (3%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           + + +  F +     FK   T  YP      +PR+ G H L R+P+G E+C+ C+LC   
Sbjct: 3   IFDPIKGFGVTFATMFKKVATEEYPEAGAPAAPRYHGRHQLNRHPDGLEKCVGCELCAWA 62

Query: 73  CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           CPA AI +E        R   G R    Y I+ ++CI CGLC EACP  ++     +E A
Sbjct: 63  CPADAIYVEGGDNTEEARYSPGERYGKNYQINYLRCIGCGLCVEACPTRSLTMINFYELA 122

Query: 128 TETRQELYYDKERLLN 143
            + RQ+L Y KE LL 
Sbjct: 123 DDDRQKLIYTKEDLLA 138


>gi|238794600|ref|ZP_04638207.1| NADH-quinone oxidoreductase subunit I [Yersinia intermedia ATCC
           29909]
 gi|238726086|gb|EEQ17633.1| NADH-quinone oxidoreductase subunit I [Yersinia intermedia ATCC
           29909]
          Length = 180

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 56/142 (39%), Positives = 75/142 (52%), Gaps = 8/142 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LKE V  F   +R       + F  + T  YP E     PR+RG   L R P+GEERC
Sbjct: 1   MTLKELVVGFGTQVRSLWMIGLHAFHKRETQMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC   CP   I+++       G      + I+  +CI+CGLC+EACP  AI   P+
Sbjct: 61  VACNLCAVACPVGCISLQKAEHKD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119

Query: 124 FEFATETRQELYYDKERLLNNG 145
           FE     RQ+L Y+KE LL +G
Sbjct: 120 FEMGEFKRQDLVYEKEDLLISG 141


>gi|78221388|ref|YP_383135.1| NADH dehydrogenase subunit I [Geobacter metallireducens GS-15]
 gi|110287755|sp|Q39ZB4|NUOI1_GEOMG RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName:
           Full=NADH dehydrogenase I subunit I 1; AltName:
           Full=NDH-1 subunit I 1
 gi|78192643|gb|ABB30410.1| NADH dehydrogenase subunit I [Geobacter metallireducens GS-15]
          Length = 184

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 51/133 (38%), Positives = 72/133 (54%), Gaps = 1/133 (0%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
            K      F+  ++ F+   T+ YP  K + +PR+R    L R P G ERC+AC LC A 
Sbjct: 15  FKAIATGLFVTWKHIFRRSVTVEYPEVKRTPAPRYRARIVLTRDPEGGERCVACYLCSAA 74

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           CP   I++E+     +G R    + I+  +CI+CGLC EACP  AI   P++E       
Sbjct: 75  CPVDCISMEATED-GNGRRYARWFRINFSRCIFCGLCAEACPTLAIQMTPDYEICERDIM 133

Query: 133 ELYYDKERLLNNG 145
           EL Y+KE LL +G
Sbjct: 134 ELVYEKEDLLIDG 146


>gi|262369340|ref|ZP_06062668.1| NADH-quinone oxidoreductase subunit I [Acinetobacter johnsonii
           SH046]
 gi|262315408|gb|EEY96447.1| NADH-quinone oxidoreductase subunit I [Acinetobacter johnsonii
           SH046]
          Length = 180

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 51/135 (37%), Positives = 73/135 (54%), Gaps = 3/135 (2%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGS--TSPRFRGEHALRRYPNGEERCIACKLCE 70
               V + ++   +  + + TI YP         PRFRG   L R P+GEERC+AC LC 
Sbjct: 8   FGSIVRSLWMVFSHVTRKRDTILYPEVPAEQIVPPRFRGRIVLTRDPDGEERCVACNLCA 67

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
             CP   I+++   +  DG      + I+  +CI+CG+C+EACP  AI   P+FE     
Sbjct: 68  VACPVGCISLQKAEK-EDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQMTPDFELGEYV 126

Query: 131 RQELYYDKERLLNNG 145
           RQ+L Y+KE LL +G
Sbjct: 127 RQDLVYEKENLLISG 141


>gi|262376770|ref|ZP_06069998.1| NADH-plastoquinone oxidoreductase, I subunit [Acinetobacter lwoffii
           SH145]
 gi|262308480|gb|EEY89615.1| NADH-plastoquinone oxidoreductase, I subunit [Acinetobacter lwoffii
           SH145]
          Length = 180

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 52/135 (38%), Positives = 73/135 (54%), Gaps = 3/135 (2%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGS--TSPRFRGEHALRRYPNGEERCIACKLCE 70
               V + ++   +  + + TI YP         PRFRG   L R P+GEERC+AC LC 
Sbjct: 8   FGSIVRSLWMVFSHATRKRDTILYPEVPAEEIVPPRFRGRIVLTRDPDGEERCVACNLCA 67

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
             CP   I+++   R  DG      + I+  +CI+CG+C+EACP  AI   P+FE     
Sbjct: 68  VACPVGCISLQKAER-EDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQMTPDFELGEYV 126

Query: 131 RQELYYDKERLLNNG 145
           RQ+L Y+KE LL +G
Sbjct: 127 RQDLVYEKEHLLISG 141


>gi|223937084|ref|ZP_03628992.1| NADH-quinone oxidoreductase, chain I [bacterium Ellin514]
 gi|223894365|gb|EEF60818.1| NADH-quinone oxidoreductase, chain I [bacterium Ellin514]
          Length = 182

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 50/167 (29%), Positives = 88/167 (52%), Gaps = 13/167 (7%)

Query: 1   MRIFRCNVSFL---FLKEFVGAFFLCLRYFFK-----AKTTINYPFEKGSTSPRFRGEHA 52
           M + R  +SF    +L    G   +  R+F +        T+ YP +K +  P +RG   
Sbjct: 1   MIVKREKLSFWERLYLPALWGGLKVTGRHFRRTLFQGKTVTMEYPEQKWTVPPGYRGAPY 60

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           L +      +C++C+LCE +CP +AI I     E  P+  +  +    ++I+M++CI+CG
Sbjct: 61  LVKDQEDRTKCVSCQLCEFVCPPKAIKIIPPGTEGDPKVGNVEKAPKEFEINMLRCIFCG 120

Query: 108 LCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVR 154
            CQE CP +AI    ++     +R+E+ Y+KE+LL+ G   + +I +
Sbjct: 121 FCQEVCPEEAIFLMKDYSLTGTSRKEMIYNKEKLLSLGGIHQDKIQK 167


>gi|238763933|ref|ZP_04624890.1| NADH-quinone oxidoreductase subunit I [Yersinia kristensenii ATCC
           33638]
 gi|238784993|ref|ZP_04628991.1| NADH-quinone oxidoreductase subunit I [Yersinia bercovieri ATCC
           43970]
 gi|238697901|gb|EEP90661.1| NADH-quinone oxidoreductase subunit I [Yersinia kristensenii ATCC
           33638]
 gi|238714109|gb|EEQ06123.1| NADH-quinone oxidoreductase subunit I [Yersinia bercovieri ATCC
           43970]
          Length = 180

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 56/142 (39%), Positives = 75/142 (52%), Gaps = 8/142 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LKE V  F   +R       + F  + T  YP E     PR+RG   L R P+GEERC
Sbjct: 1   MTLKELVVGFGTQVRSLWMIGLHAFHKRETQMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC   CP   I+++       G      + I+  +CI+CGLC+EACP  AI   P+
Sbjct: 61  VACNLCAVACPVGCISLQKAEHKD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119

Query: 124 FEFATETRQELYYDKERLLNNG 145
           FE     RQ+L Y+KE LL +G
Sbjct: 120 FEMGEFKRQDLVYEKEDLLISG 141


>gi|148260117|ref|YP_001234244.1| NADH-quinone oxidoreductase, chain I [Acidiphilium cryptum JF-5]
 gi|146401798|gb|ABQ30325.1| NADH dehydrogenase subunit I [Acidiphilium cryptum JF-5]
          Length = 170

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 48/126 (38%), Positives = 70/126 (55%), Gaps = 2/126 (1%)

Query: 20  FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79
            +    + F+   T++YP E    +PR+RG   L R P+GEERC++C LC   CP   I+
Sbjct: 8   LWYTFLHLFQRNVTVSYPDEMPYLAPRYRGRIVLTRDPDGEERCVSCYLCAVACPVDCIS 67

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139
           ++       G      + I+  +CI+CG C+EACP  AI   P+FE +   RQ L Y+KE
Sbjct: 68  LQKTEAE--GRWYPEFFRINFSRCIFCGFCEEACPTYAIQLTPDFEMSEYDRQNLVYEKE 125

Query: 140 RLLNNG 145
            LL +G
Sbjct: 126 HLLISG 131


>gi|332162382|ref|YP_004298959.1| NADH dehydrogenase subunit I [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318606461|emb|CBY27959.1| NADH-ubiquinone oxidoreductase chain I [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325666612|gb|ADZ43256.1| NADH dehydrogenase subunit I [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 180

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 56/142 (39%), Positives = 75/142 (52%), Gaps = 8/142 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LKE V  F   +R       + F  + T  YP E     PR+RG   L R P+GEERC
Sbjct: 1   MTLKELVVGFGTQVRSLWMIGLHAFHKRETQMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC   CP   I+++       G      + I+  +CI+CGLC+EACP  AI   P+
Sbjct: 61  VACNLCAVACPVGCISLQKAEHKD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119

Query: 124 FEFATETRQELYYDKERLLNNG 145
           FE     RQ+L Y+KE LL +G
Sbjct: 120 FEMGEFKRQDLVYEKEDLLISG 141


>gi|123441683|ref|YP_001005667.1| NADH dehydrogenase subunit I [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|156633543|sp|A1JLI2|NUOI_YERE8 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|122088644|emb|CAL11439.1| NADH Dehydrogenase I chain I [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 180

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 56/142 (39%), Positives = 75/142 (52%), Gaps = 8/142 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LKE V  F   +R       + F  + T  YP E     PR+RG   L R P+GEERC
Sbjct: 1   MTLKELVVGFGTQVRSLWMIGLHAFHKRETQMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC   CP   I+++       G      + I+  +CI+CGLC+EACP  AI   P+
Sbjct: 61  VACNLCAVACPVGCISLQKAEHKD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119

Query: 124 FEFATETRQELYYDKERLLNNG 145
           FE     RQ+L Y+KE LL +G
Sbjct: 120 FEMGEFKRQDLVYEKEDLLISG 141


>gi|304413378|ref|ZP_07394851.1| NADH:ubiquinone oxidoreductase, chain I [Candidatus Regiella
           insecticola LSR1]
 gi|304284221|gb|EFL92614.1| NADH:ubiquinone oxidoreductase, chain I [Candidatus Regiella
           insecticola LSR1]
          Length = 183

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 56/143 (39%), Positives = 78/143 (54%), Gaps = 8/143 (5%)

Query: 10  FLFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
            + LKE +  F   +R       + F  + T  YP E     PR+RG   L R P+G+ER
Sbjct: 3   TMTLKELIIGFGTQIRSLWLMALHAFHPRETKMYPEEPVYLPPRYRGRIVLTRDPDGQER 62

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+AC LC A+CP   I+++      DG      + I+  +CI+CGLC+EACP  AI   P
Sbjct: 63  CVACNLCAAVCPVDCISLQKAE-TKDGRWYPEFFRINFSRCIFCGLCEEACPTLAIQLTP 121

Query: 123 NFEFATETRQELYYDKERLLNNG 145
           +FE     RQ+L Y+KE LL +G
Sbjct: 122 DFEMGEFKRQDLVYEKEDLLISG 144


>gi|15806509|ref|NP_295220.1| NADH dehydrogenase I subunit I [Deinococcus radiodurans R1]
 gi|81789326|sp|Q9RU95|NUOI_DEIRA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|6459254|gb|AAF11060.1|AE001993_10 NADH dehydrogenase I, I subunit [Deinococcus radiodurans R1]
          Length = 178

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 57/157 (36%), Positives = 82/157 (52%), Gaps = 10/157 (6%)

Query: 15  EFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPN-GEERCIACKLCEAIC 73
           +      + L   F+   T++YP ++ +  PRFRG H L R+P+ G E+CI C LC A C
Sbjct: 5   DIAKGMGVTLGKLFQKPLTVSYPEQRATLQPRFRGRHVLTRHPDTGLEKCIGCSLCAAAC 64

Query: 74  PAQAITIESGPRCH-----DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
           PA AI +E+           G R    Y+I+M++CI+CGLC+EACP  A+V G  FE A 
Sbjct: 65  PAYAIYVEAAENDPRDPVSPGERYAKVYEINMLRCIFCGLCEEACPTGAVVLGNEFEMAD 124

Query: 129 ETRQELYYDKERLLNN--GDRWESEIVRNIVTDSPYR 163
              ++  Y KE +L    G R +      +    P R
Sbjct: 125 YRSRDFVYGKEDMLVGVTGSRPQRREA--LSAGRPVR 159


>gi|256422828|ref|YP_003123481.1| NADH-quinone oxidoreductase, chain I [Chitinophaga pinensis DSM
           2588]
 gi|256037736|gb|ACU61280.1| NADH-quinone oxidoreductase, chain I [Chitinophaga pinensis DSM
           2588]
          Length = 171

 Score =  125 bits (313), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 51/128 (39%), Positives = 73/128 (57%), Gaps = 1/128 (0%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           +   +L   + F  + TI YP EK +  PR+RG   L + P+G ERC+ C LC A CP  
Sbjct: 5   LRTMWLVFLHLFHKRETIQYPEEKVALRPRWRGRIVLTKDPDGGERCVGCYLCAAACPVD 64

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
            I +++     +G R    + I+  +CI+CG C+EACP  AI   P+FE A   RQ+L Y
Sbjct: 65  CIALQATED-ENGRRYPEFFRINFSRCIFCGYCEEACPTYAIQLTPDFEMAEYRRQDLVY 123

Query: 137 DKERLLNN 144
           +KE LL +
Sbjct: 124 EKEDLLID 131


>gi|326402930|ref|YP_004283011.1| NADH-quinone oxidoreductase subunit I [Acidiphilium multivorum
           AIU301]
 gi|325049791|dbj|BAJ80129.1| NADH-quinone oxidoreductase subunit I [Acidiphilium multivorum
           AIU301]
          Length = 170

 Score =  125 bits (313), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 48/126 (38%), Positives = 70/126 (55%), Gaps = 2/126 (1%)

Query: 20  FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79
            +    + F+   T++YP E    +PR+RG   L R P+GEERC++C LC   CP   I+
Sbjct: 8   LWYTFLHLFQRNVTVSYPDEMPYLAPRYRGRIVLTRDPDGEERCVSCYLCAVACPVDCIS 67

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139
           ++       G      + I+  +CI+CG C+EACP  AI   P+FE +   RQ L Y+KE
Sbjct: 68  LQKTEAE--GRWYPEFFRINFSRCIFCGFCEEACPTYAIQLTPDFEMSEYDRQNLVYEKE 125

Query: 140 RLLNNG 145
            LL +G
Sbjct: 126 HLLISG 131


>gi|330830052|ref|YP_004393004.1| NADH-quinone oxidoreductase subunit I [Aeromonas veronii B565]
 gi|328805188|gb|AEB50387.1| NADH-quinone oxidoreductase subunit I [Aeromonas veronii B565]
          Length = 180

 Score =  125 bits (313), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 50/129 (38%), Positives = 76/129 (58%), Gaps = 1/129 (0%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           + +  +   + ++ + T+NYP +    +PR+RG   L R P+G+ERC+AC LC   CP  
Sbjct: 14  LRSLAMVFSHAWRPRETLNYPEQAVYAAPRYRGRIVLTRDPDGDERCVACNLCAVACPVG 73

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
            I+++   R  DG      + I+  +CI+CGLC+EACP  AI   P+FE     RQ+L Y
Sbjct: 74  CISLQKSER-EDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDFEMGEYRRQDLVY 132

Query: 137 DKERLLNNG 145
           +KE LL +G
Sbjct: 133 EKEDLLISG 141


>gi|183599629|ref|ZP_02961122.1| hypothetical protein PROSTU_03116 [Providencia stuartii ATCC 25827]
 gi|188021881|gb|EDU59921.1| hypothetical protein PROSTU_03116 [Providencia stuartii ATCC 25827]
          Length = 180

 Score =  125 bits (313), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 54/142 (38%), Positives = 77/142 (54%), Gaps = 8/142 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LK+ +  F   +R       + F+ + T  YP E     PR+RG   L R P+GEERC
Sbjct: 1   MTLKDLLVGFGTQVRSIWLVGLHAFQKRETQMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC   CP   I+++      DG      + I+  +CI+CGLC+EACP  AI   P+
Sbjct: 61  VACNLCAVACPVGCISLQKAE-HEDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119

Query: 124 FEFATETRQELYYDKERLLNNG 145
           FE     RQ+L Y+K+ LL +G
Sbjct: 120 FEMGEWRRQDLVYEKDHLLISG 141


>gi|302523885|ref|ZP_07276227.1| NADH-plastoquinone oxidoreductase, I subunit [Streptomyces sp. AA4]
 gi|302432780|gb|EFL04596.1| NADH-plastoquinone oxidoreductase, I subunit [Streptomyces sp. AA4]
          Length = 192

 Score =  125 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 50/132 (37%), Positives = 67/132 (50%), Gaps = 5/132 (3%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           +  F +     FK   T  YP      +PR+ G H L R+P+G E+C+ C+LC   CPA 
Sbjct: 22  IKGFGVTFGMMFKKVATEEYPEAGAPAAPRYHGRHQLNRHPDGLEKCVGCELCAWACPAD 81

Query: 77  AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E        R   G R    Y I+ ++CI CGLC EACP  ++     +E A + R
Sbjct: 82  AIFVEGGNNTDEERYSPGERYGADYQINYLRCIGCGLCIEACPTRSLTMTNFYELADDDR 141

Query: 132 QELYYDKERLLN 143
           Q L Y KE LL 
Sbjct: 142 QRLIYTKEDLLA 153


>gi|303248406|ref|ZP_07334666.1| NADH-quinone oxidoreductase, chain I [Desulfovibrio fructosovorans
           JJ]
 gi|302490204|gb|EFL50122.1| NADH-quinone oxidoreductase, chain I [Desulfovibrio fructosovorans
           JJ]
          Length = 187

 Score =  125 bits (313), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 52/131 (39%), Positives = 72/131 (54%), Gaps = 1/131 (0%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
              +G++   L + F+   T  YP  K     R RG   L R P+G+ERC+AC LC   C
Sbjct: 19  TGIIGSYAATLTHLFRKPVTEQYPEYKRPMPARTRGRIILTRSPDGKERCVACYLCSGAC 78

Query: 74  PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
           P   I+++S     DG RR   + I+  +CIYCGLC+EACP  AI   P F F+ ++ + 
Sbjct: 79  PVNCISMQSEE-GPDGRRRAAWFRINFARCIYCGLCEEACPTLAIQLTPEFAFSKDSIEA 137

Query: 134 LYYDKERLLNN 144
             Y+KE LL N
Sbjct: 138 FVYEKEDLLVN 148


>gi|227494511|ref|ZP_03924827.1| NADH dehydrogenase (quinone) [Actinomyces coleocanis DSM 15436]
 gi|226832245|gb|EEH64628.1| NADH dehydrogenase (quinone) [Actinomyces coleocanis DSM 15436]
          Length = 222

 Score =  124 bits (312), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 51/144 (35%), Positives = 72/144 (50%), Gaps = 8/144 (5%)

Query: 12  FLKEFVG---AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKL 68
           FL E       + + +  FF+   T  YPFE     PRF G H L RY +G E+CI C+L
Sbjct: 19  FLGELFAPVAGYGVTITSFFRPTVTEQYPFEGPYVMPRFHGRHQLNRYADGLEKCIGCEL 78

Query: 69  CEAICPAQAI-----TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           C   CPA AI           +   G R    Y ++ ++CI+CGLC EACP  A+    +
Sbjct: 79  CAWACPADAILVEAANNTPEAQYAPGERYGRVYQVNYLRCIFCGLCMEACPTRALTMSTD 138

Query: 124 FEFATETRQELYYDKERLLNNGDR 147
           FE A   R +L ++K ++L   + 
Sbjct: 139 FELADYKRADLIFEKPQILAPLEE 162


>gi|225679000|gb|EEH17284.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Paracoccidioides
           brasiliensis Pb03]
          Length = 213

 Score =  124 bits (312), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 78/117 (66%), Positives = 88/117 (75%), Gaps = 1/117 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
                 +  + E +   ++ L  FF+   TI YPFEKG  SPRFRGEHALRRYP+GEERC
Sbjct: 71  LDKAGKYFLMTEMLRGMYVVLEQFFRPPYTIFYPFEKGPISPRFRGEHALRRYPSGEERC 130

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           IACKLCEAICPAQAITIE+  R  DG+RRT RYDIDM KCIYCG CQE+CPVDAIVE
Sbjct: 131 IACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQESCPVDAIVE 186


>gi|253698808|ref|YP_003019997.1| NADH dehydrogenase subunit I [Geobacter sp. M21]
 gi|251773658|gb|ACT16239.1| NADH-quinone oxidoreductase, chain I [Geobacter sp. M21]
          Length = 176

 Score =  124 bits (312), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 45/133 (33%), Positives = 68/133 (51%), Gaps = 1/133 (0%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           +KE +    +   + ++   T+ +P E+    PRFRG   L R P+G ERC+AC LC   
Sbjct: 7   IKEILTGLSITFSHIWRKPVTVQFPEEQRPMPPRFRGSIVLTRDPDGAERCVACYLCSGA 66

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           CP   I++ +     +G R    + I+  +CI CG+C EACP  AI   P          
Sbjct: 67  CPVDCISMAAAE-GENGRRYAAWFRINFSRCILCGMCAEACPTLAIQMSPKMFRCKRQVM 125

Query: 133 ELYYDKERLLNNG 145
           ++ Y+KE LL +G
Sbjct: 126 DMVYEKEDLLIDG 138


>gi|21672444|ref|NP_660511.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|25008868|sp|Q8K9Y0|NUOI_BUCAP RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|21623057|gb|AAM67722.1| NADH dehydrogenase I chain I [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 180

 Score =  124 bits (312), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 54/162 (33%), Positives = 81/162 (50%), Gaps = 11/162 (6%)

Query: 8   VSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACK 67
           +   FL +      +  +  F    T  YP EK   SPR+RG   L R  +G ERC+AC 
Sbjct: 6   IIIGFLLQIRSILMV-FKNIFSKSETKMYPEEKLYLSPRYRGRVILTRNIDGGERCVACN 64

Query: 68  LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           LC  +CP   I+++   +  +G      + I+  +CI+CGLC+EACP  AI   P+FE +
Sbjct: 65  LCAVVCPVDCISLQKSEK-KNGRWYPKFFRINFSRCIFCGLCEEACPTAAIQLMPDFELS 123

Query: 128 TETRQELYYDKERLLNNGD---------RWESEIVRNIVTDS 160
              RQ L Y+KE LL +G          R+   ++++   D 
Sbjct: 124 DFNRQNLVYEKEDLLISGPGKYPDYDFYRFSGVVIKDKKVDK 165


>gi|317123853|ref|YP_004097965.1| NADH dehydrogenase subunit I [Intrasporangium calvum DSM 43043]
 gi|315587941|gb|ADU47238.1| NADH dehydrogenase subunit I [Intrasporangium calvum DSM 43043]
          Length = 250

 Score =  124 bits (312), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 49/139 (35%), Positives = 68/139 (48%), Gaps = 12/139 (8%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V  F +     F+   T  YP +   T PRF G H L R+ +G E+C+ C+LC   CPA 
Sbjct: 25  VAGFGVSFSTMFRKVATEEYPEKPRPTQPRFHGRHQLNRHADGLEKCVGCELCAWACPAD 84

Query: 77  AITIESGP------------RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           AI +E               R   G R    Y I+ ++CI+CGLC EACP  A+     +
Sbjct: 85  AILVEGADNDDTPLEQGGKGRFSPGERYGRVYQINYLRCIFCGLCIEACPTRALTMTNFY 144

Query: 125 EFATETRQELYYDKERLLN 143
           E A   R +L + K++LL 
Sbjct: 145 ELADNDRGKLIFTKDQLLA 163


>gi|238753747|ref|ZP_04615108.1| NADH-quinone oxidoreductase subunit I [Yersinia ruckeri ATCC 29473]
 gi|238707983|gb|EEQ00340.1| NADH-quinone oxidoreductase subunit I [Yersinia ruckeri ATCC 29473]
          Length = 180

 Score =  124 bits (311), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 55/142 (38%), Positives = 75/142 (52%), Gaps = 8/142 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LKE V  F   +R       + F  + T  YP E     PR+RG   L R P+GEERC
Sbjct: 1   MTLKELVVGFGTQVRSLWMIGLHAFHKRETQMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC   CP   I+++       G      + ++  +CI+CGLC+EACP  AI   P+
Sbjct: 61  VACNLCAVACPVGCISLQKAEHQD-GRWYPEFFRVNFSRCIFCGLCEEACPTTAIQLTPD 119

Query: 124 FEFATETRQELYYDKERLLNNG 145
           FE     RQ+L Y+KE LL +G
Sbjct: 120 FEMGEFKRQDLVYEKEDLLISG 141


>gi|302035618|ref|YP_003795940.1| NADH-quinone oxidoreductase subunit I [Candidatus Nitrospira
           defluvii]
 gi|300603682|emb|CBK40013.1| NADH-quinone oxidoreductase, subunit I (modular protein)
           [Candidatus Nitrospira defluvii]
          Length = 202

 Score =  124 bits (311), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 47/145 (32%), Positives = 74/145 (51%), Gaps = 1/145 (0%)

Query: 5   RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64
           +  +      E   A  +  ++ F    T  YP E+ +     RG   L RY +G +RC+
Sbjct: 15  KKILQAALFYEIWDAMKVTFKHMFHRPITFQYPREQRTIPDGHRGALGLLRYGDGRDRCV 74

Query: 65  ACKLCEAICPAQAITIESGPRCHDG-TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
            C LCEA CP++ I + S         R    + ID+ KC++CG C EACPV+A+     
Sbjct: 75  GCDLCEAACPSRCIKVISQEDPERPLQRFASEFYIDITKCVFCGYCVEACPVNALAMTKM 134

Query: 124 FEFATETRQELYYDKERLLNNGDRW 148
           +E++T  ++ L +DK+RL   G+R 
Sbjct: 135 YEYSTHDKRTLLFDKKRLYEVGERH 159


>gi|24372600|ref|NP_716642.1| NADH dehydrogenase subunit I [Shewanella oneidensis MR-1]
 gi|81744862|sp|Q8EI36|NUOI_SHEON RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|24346625|gb|AAN54087.1|AE015546_4 NADH dehydrogenase I, I subunit [Shewanella oneidensis MR-1]
          Length = 180

 Score =  124 bits (311), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 50/129 (38%), Positives = 74/129 (57%), Gaps = 1/129 (0%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           + +  +   + +  + T+NYP E    +PR+RG   L R P+G+ERC+AC LC   CP  
Sbjct: 14  LRSLSMVFSHAWHPRETLNYPEEAVYAAPRYRGRIVLTRDPDGDERCVACNLCAVACPVG 73

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
            I+++   R   G      + I+  +CI+CGLC+EACP  AI   P+FE     RQ+L Y
Sbjct: 74  CISLQKSERDD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDFEMGEYRRQDLVY 132

Query: 137 DKERLLNNG 145
           +KE LL +G
Sbjct: 133 EKEDLLISG 141


>gi|301058593|ref|ZP_07199598.1| NADH-quinone oxidoreductase subunit I [delta proteobacterium
           NaphS2]
 gi|300447325|gb|EFK11085.1| NADH-quinone oxidoreductase subunit I [delta proteobacterium
           NaphS2]
          Length = 171

 Score =  124 bits (311), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 52/133 (39%), Positives = 74/133 (55%), Gaps = 1/133 (0%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           +   + +  L   +  + + T+ YP ++  T PRFRG   L R P+G ERC+AC LC A+
Sbjct: 1   MFSILRSIALIFTHAIRPRETVQYPEKRPYTPPRFRGRIVLTRDPDGAERCVACYLCSAV 60

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           CP   I ++ G    DG      + I+  +CIYCG C+EACP  AI   P+FE     R 
Sbjct: 61  CPTDCIAVQ-GAVAEDGRHYAASFRINFARCIYCGFCEEACPTLAIQLSPDFEMGEYNRH 119

Query: 133 ELYYDKERLLNNG 145
           +L Y+KE LL +G
Sbjct: 120 DLVYEKEDLLISG 132


>gi|53804530|ref|YP_113813.1| NADH dehydrogenase subunit I [Methylococcus capsulatus str. Bath]
 gi|81682188|sp|Q608Y4|NUOI_METCA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|53758291|gb|AAU92582.1| NADH dehydrogenase I, I subunit [Methylococcus capsulatus str.
           Bath]
          Length = 171

 Score =  124 bits (311), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 50/129 (38%), Positives = 71/129 (55%), Gaps = 1/129 (0%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           +   ++ L++ F    T+ YP ++    PR+RG   L R P+GEERC+AC LC A+CP  
Sbjct: 5   LRTLWIVLKHTFSRADTVQYPEQRPKLYPRYRGRIVLTRDPDGEERCVACNLCAAVCPVD 64

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
            I ++       G      + I+  +CI CGLC+EACP  AI   P+FE     R+ L Y
Sbjct: 65  CIALQKTEDVD-GRWYPEFFRINFSRCILCGLCEEACPTYAIQLTPDFELCEYDRRNLVY 123

Query: 137 DKERLLNNG 145
           +KE LL  G
Sbjct: 124 EKEHLLIQG 132


>gi|146312467|ref|YP_001177541.1| NADH dehydrogenase subunit I [Enterobacter sp. 638]
 gi|145319343|gb|ABP61490.1| NADH dehydrogenase subunit I [Enterobacter sp. 638]
          Length = 180

 Score =  124 bits (311), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 55/142 (38%), Positives = 75/142 (52%), Gaps = 8/142 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LKE +      +R       + F  + T  YP E     PR+RG   L R P+GEERC
Sbjct: 1   MTLKELLVGAGTQIRSIWMIGLHAFAKRETQMYPEEPVYLPPRYRGRIVLSRDPDGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC   CP   I+++      DG      + I+  +CI+CGLC+EACP  AI   P+
Sbjct: 61  VACNLCAVACPVGCISLQKAE-TKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119

Query: 124 FEFATETRQELYYDKERLLNNG 145
           FE     RQ+L Y+KE LL +G
Sbjct: 120 FEMGEYKRQDLVYEKEDLLISG 141


>gi|37526970|ref|NP_930314.1| NADH dehydrogenase subunit I [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|81707635|sp|Q7N2J4|NUOI_PHOLL RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|36786403|emb|CAE15456.1| NADH dehydrogenase I chain I (NADH-ubiquinone oxidoreductase chain
           9) (NUO9) [Photorhabdus luminescens subsp. laumondii
           TTO1]
          Length = 180

 Score =  124 bits (311), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 57/142 (40%), Positives = 77/142 (54%), Gaps = 8/142 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LKE V  F   +R       + F  + T  YP E     PR+RG   L R P+GEERC
Sbjct: 1   MTLKELVVGFATQVRSIWMIGLHAFHKRETQMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC A+CP   I+++      DG      + I+  +CI+CGLC+EACP  AI   P+
Sbjct: 61  VACNLCAAVCPVGCISLQKAE-HEDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119

Query: 124 FEFATETRQELYYDKERLLNNG 145
           FE     RQ+L Y+KE L  +G
Sbjct: 120 FEMGEFKRQDLVYEKEELTISG 141


>gi|300723697|ref|YP_003713004.1| NADH dehydrogenase I subunit I, 2Fe-2S ferredoxin-related
           [Xenorhabdus nematophila ATCC 19061]
 gi|297630221|emb|CBJ90872.1| NADH dehydrogenase I chain I, 2Fe-2S ferredoxin-related
           [Xenorhabdus nematophila ATCC 19061]
          Length = 180

 Score =  124 bits (311), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 56/142 (39%), Positives = 77/142 (54%), Gaps = 8/142 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LKE V  F   +R       + F  + T  YP E     PR+RG   L R P+GEERC
Sbjct: 1   MTLKELVVGFATQVRSIWMIGLHAFHKRETKMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC A+CP   I+++       G      + ++  +CI+CGLC+EACP  AI   P+
Sbjct: 61  VACNLCAAVCPVGCISLQKAEHKD-GRWYPEFFRVNFSRCIFCGLCEEACPTTAIQLTPD 119

Query: 124 FEFATETRQELYYDKERLLNNG 145
           FE     RQ+L Y+KE LL +G
Sbjct: 120 FELGEFKRQDLVYEKEDLLISG 141


>gi|227112320|ref|ZP_03825976.1| NADH dehydrogenase subunit I [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
 gi|227326159|ref|ZP_03830183.1| NADH dehydrogenase subunit I [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
 gi|261820799|ref|YP_003258905.1| NADH dehydrogenase subunit I [Pectobacterium wasabiae WPP163]
 gi|261604812|gb|ACX87298.1| NADH-quinone oxidoreductase, chain I [Pectobacterium wasabiae
           WPP163]
          Length = 180

 Score =  124 bits (310), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 56/142 (39%), Positives = 76/142 (53%), Gaps = 8/142 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LKE V  F   +R         FK + T  YP E  +  PR+RG   L R P+GEERC
Sbjct: 1   MTLKELVVGFGTQIRSICMVGSNAFKKRETRMYPEEPVNPPPRYRGRIVLTRDPDGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC   CP   I+++      DG      + ++  +CI+CG C+EACP  AI   P+
Sbjct: 61  VACNLCAVACPVGCISLQKAE-TKDGRWYPEFFRVNFSRCIFCGFCEEACPTTAIQLTPD 119

Query: 124 FEFATETRQELYYDKERLLNNG 145
           FE     RQ+L Y+KE LL +G
Sbjct: 120 FEMGDYKRQDLVYEKEDLLISG 141


>gi|261346150|ref|ZP_05973794.1| NADH-quinone oxidoreductase subunit I [Providencia rustigianii DSM
           4541]
 gi|282565803|gb|EFB71338.1| NADH-quinone oxidoreductase subunit I [Providencia rustigianii DSM
           4541]
          Length = 180

 Score =  124 bits (310), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 55/142 (38%), Positives = 76/142 (53%), Gaps = 8/142 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LKE +  F   +R       + F  + T  YP E     PR+RG   L R P+GEERC
Sbjct: 1   MTLKELLVGFATQVRSIWMVGLHAFDKRETQMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC   CP   I+++      DG      + ++  +CI+CGLC+EACP  AI   P+
Sbjct: 61  VACNLCAVACPVGCISLQKAE-HEDGRWYPEFFRVNFSRCIFCGLCEEACPTTAIQLTPD 119

Query: 124 FEFATETRQELYYDKERLLNNG 145
           FE A   RQ+L Y+K  LL +G
Sbjct: 120 FEMADWRRQDLVYEKNDLLISG 141


>gi|51892732|ref|YP_075423.1| NADH dehydrogenase I subunit I [Symbiobacterium thermophilum IAM
           14863]
 gi|81692101|sp|Q67P14|NUOI1_SYMTH RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName:
           Full=NADH dehydrogenase I subunit I 1; AltName:
           Full=NDH-1 subunit I 1
 gi|51856421|dbj|BAD40579.1| NADH dehydrogenase I subunit I [Symbiobacterium thermophilum IAM
           14863]
          Length = 162

 Score =  124 bits (310), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 51/131 (38%), Positives = 74/131 (56%), Gaps = 5/131 (3%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                   L+  F+   T++YP+ K   +PRFRG H LR Y NG E C+ C+LC+  CPA
Sbjct: 7   IAKGMATTLKVLFRKPVTVDYPYVKRPRAPRFRGRHELRTYENGLEMCVGCELCQVACPA 66

Query: 76  QAITIESGPRCH-----DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
            AIT+++           G R   +Y +D+++CI+CG+C+EACP D +     FE A  T
Sbjct: 67  AAITVQAAENDPDNPHSPGERYGYKYQVDLLRCIFCGMCEEACPTDCLHLTQEFELADFT 126

Query: 131 RQELYYDKERL 141
           R+ L   KE+L
Sbjct: 127 RESLILQKEQL 137


>gi|77917827|ref|YP_355642.1| NADH dehydrogenase subunit I [Pelobacter carbinolicus DSM 2380]
 gi|110287764|sp|Q3A820|NUOI_PELCD RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|77543910|gb|ABA87472.1| NADH dehydrogenase subunit I [Pelobacter carbinolicus DSM 2380]
          Length = 176

 Score =  124 bits (310), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 54/145 (37%), Positives = 82/145 (56%), Gaps = 7/145 (4%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M +++     +        F++ LRY F+   T+ YP  K + +PR+RG   L R P+GE
Sbjct: 1   MSLWKDIKGTIL------PFWVTLRYLFRRPVTVCYPERKQTPAPRYRGRLVLTRDPDGE 54

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERC+AC LC A CP   I++++  R  DG R    + I+  +CI+CGLC EACP  A+  
Sbjct: 55  ERCVACHLCSAACPVDCISMQAAER-EDGRRYAAWFRINFSRCIFCGLCTEACPTLALQM 113

Query: 121 GPNFEFATETRQELYYDKERLLNNG 145
              +E AT    ++ Y+K+ LL +G
Sbjct: 114 TSEYELATRELLQVIYEKDELLIDG 138


>gi|253689141|ref|YP_003018331.1| NADH-quinone oxidoreductase, chain I [Pectobacterium carotovorum
           subsp. carotovorum PC1]
 gi|251755719|gb|ACT13795.1| NADH-quinone oxidoreductase, chain I [Pectobacterium carotovorum
           subsp. carotovorum PC1]
          Length = 180

 Score =  124 bits (310), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 55/142 (38%), Positives = 76/142 (53%), Gaps = 8/142 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LK+ V  F   +R         FK + T  YP E  +  PR+RG   L R P+GEERC
Sbjct: 1   MTLKDLVVGFGTQIRSICMVGSNAFKKRETRMYPEEPVNPPPRYRGRIVLTRDPDGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC   CP   I+++      DG      + ++  +CI+CG C+EACP  AI   P+
Sbjct: 61  VACNLCAVACPVGCISLQKAE-TKDGRWYPEFFRVNFSRCIFCGFCEEACPTTAIQLTPD 119

Query: 124 FEFATETRQELYYDKERLLNNG 145
           FE     RQ+L Y+KE LL +G
Sbjct: 120 FEMGDYKRQDLVYEKEDLLISG 141


>gi|312890388|ref|ZP_07749925.1| NADH dehydrogenase subunit I [Mucilaginibacter paludis DSM 18603]
 gi|311297158|gb|EFQ74290.1| NADH dehydrogenase subunit I [Mucilaginibacter paludis DSM 18603]
          Length = 165

 Score =  124 bits (310), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 50/138 (36%), Positives = 77/138 (55%), Gaps = 6/138 (4%)

Query: 12  FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71
           +L   +    +  ++FF+   TI+YP EK   S  FRG H+L+R   G ERC AC LC  
Sbjct: 23  YLPAILSGLRITGKHFFRKPVTISYPDEKREFSENFRGMHSLKRDEEGRERCTACGLCAL 82

Query: 72  ICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
            CPA+AIT+ +  R           +    Y+I+M++CI+CGLC+EACP +AI    +  
Sbjct: 83  SCPAEAITMIAAERQKGEEKLYREEKYAAVYEINMLRCIFCGLCEEACPKEAIYLDGDIV 142

Query: 126 FATETRQELYYDKERLLN 143
            +   R++  Y K++L+ 
Sbjct: 143 PSNYLRKDFIYGKDKLVE 160


>gi|212712283|ref|ZP_03320411.1| hypothetical protein PROVALCAL_03369 [Providencia alcalifaciens DSM
           30120]
 gi|268591142|ref|ZP_06125363.1| NADH-quinone oxidoreductase subunit I [Providencia rettgeri DSM
           1131]
 gi|212685029|gb|EEB44557.1| hypothetical protein PROVALCAL_03369 [Providencia alcalifaciens DSM
           30120]
 gi|291313368|gb|EFE53821.1| NADH-quinone oxidoreductase subunit I [Providencia rettgeri DSM
           1131]
          Length = 180

 Score =  124 bits (310), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 55/142 (38%), Positives = 76/142 (53%), Gaps = 8/142 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LKE +  F   +R       + F  + T  YP E     PR+RG   L R P+GEERC
Sbjct: 1   MTLKELLVGFATQVRSIWMVGLHAFDKRETQMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC   CP   I+++      DG      + ++  +CI+CGLC+EACP  AI   P+
Sbjct: 61  VACNLCAVACPVGCISLQKAE-HEDGRWYPEFFRVNFSRCIFCGLCEEACPTTAIQLTPD 119

Query: 124 FEFATETRQELYYDKERLLNNG 145
           FE A   RQ+L Y+K  LL +G
Sbjct: 120 FEMADWRRQDLVYEKNDLLISG 141


>gi|253989007|ref|YP_003040363.1| NADH dehydrogenase subunit I [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780457|emb|CAQ83619.1| NADH-quinone oxidoreductase subunit I [Photorhabdus asymbiotica]
          Length = 180

 Score =  123 bits (309), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 55/142 (38%), Positives = 76/142 (53%), Gaps = 8/142 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LKE V  F   +R       + F  + T  YP E     PR+RG   L R P+GEERC
Sbjct: 1   MTLKELVVGFATQVRSIWMIGLHAFHKRETQMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC A+CP   I+++       G      + I+  +CI+CGLC+EACP  AI   P+
Sbjct: 61  VACNLCAAVCPVGCISLQKAEHKD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119

Query: 124 FEFATETRQELYYDKERLLNNG 145
           FE     RQ+L Y+K+ L  +G
Sbjct: 120 FEMGEFKRQDLVYEKDDLTISG 141


>gi|308232352|ref|ZP_07664062.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
           SUMu001]
 gi|308370163|ref|ZP_07666876.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
           SUMu002]
 gi|308371248|ref|ZP_07667119.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
           SUMu003]
 gi|308372440|ref|ZP_07667380.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
           SUMu004]
 gi|308373654|ref|ZP_07667623.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
           SUMu005]
 gi|308374789|ref|ZP_07667864.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
           SUMu006]
 gi|308376003|ref|ZP_07668165.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
           SUMu007]
 gi|308377236|ref|ZP_07668465.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
           SUMu008]
 gi|308378204|ref|ZP_07668688.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
           SUMu009]
 gi|308379423|ref|ZP_07668963.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
           SUMu010]
 gi|308380586|ref|ZP_07669224.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
           SUMu011]
 gi|308406063|ref|ZP_07669499.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
           SUMu012]
 gi|308214182|gb|EFO73581.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
           SUMu001]
 gi|308324956|gb|EFP13807.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
           SUMu002]
 gi|308329373|gb|EFP18224.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
           SUMu003]
 gi|308333202|gb|EFP22053.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
           SUMu004]
 gi|308336692|gb|EFP25543.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
           SUMu005]
 gi|308340533|gb|EFP29384.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
           SUMu006]
 gi|308344472|gb|EFP33323.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
           SUMu007]
 gi|308348468|gb|EFP37319.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
           SUMu008]
 gi|308353098|gb|EFP41949.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
           SUMu009]
 gi|308357071|gb|EFP45922.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
           SUMu010]
 gi|308361026|gb|EFP49877.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
           SUMu011]
 gi|308364634|gb|EFP53485.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis
           SUMu012]
 gi|323718242|gb|EGB27422.1| NADH dehydrogenase I subunit I nuoI [Mycobacterium tuberculosis
           CDC1551A]
          Length = 167

 Score =  123 bits (309), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 51/122 (41%), Positives = 67/122 (54%), Gaps = 5/122 (4%)

Query: 27  FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE----- 81
            FK   T  YP   G  + R+ G H L RYP+G E+CI C+LC   CPA AI +E     
Sbjct: 1   MFKKTVTEEYPERPGPVAARYHGRHQLNRYPDGLEKCIGCELCAWACPADAIYVEGADNT 60

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERL 141
              R   G R    Y I+ ++CI CGLC EACP  A+    ++E A + R +L Y+K+RL
Sbjct: 61  EEERFSPGERYGRVYQINYLRCIGCGLCIEACPTRALTMTYDYELADDNRADLIYEKDRL 120

Query: 142 LN 143
           L 
Sbjct: 121 LA 122


>gi|50121944|ref|YP_051111.1| NADH dehydrogenase subunit I [Pectobacterium atrosepticum SCRI1043]
 gi|81693182|sp|Q6D2S4|NUOI_ERWCT RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|49612470|emb|CAG75920.1| NADH-quinone oxidoreductase chain I [Pectobacterium atrosepticum
           SCRI1043]
          Length = 180

 Score =  123 bits (309), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 56/142 (39%), Positives = 76/142 (53%), Gaps = 8/142 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LKE V  F   +R         FK + T  YP E  +  PR+RG   L R P+GEERC
Sbjct: 1   MTLKELVVGFGTQIRSICMVGSNAFKKRETRMYPEEPVNPPPRYRGRIVLTRDPDGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC   CP   I+++      DG      + ++  +CI+CG C+EACP  AI   P+
Sbjct: 61  VACNLCAVACPVGCISLQKAE-TKDGRWYPEFFRVNFSRCIFCGFCEEACPTTAIQLTPD 119

Query: 124 FEFATETRQELYYDKERLLNNG 145
           FE     RQ+L Y+KE LL +G
Sbjct: 120 FEMGEYKRQDLVYEKEDLLISG 141


>gi|226327874|ref|ZP_03803392.1| hypothetical protein PROPEN_01755 [Proteus penneri ATCC 35198]
 gi|225203578|gb|EEG85932.1| hypothetical protein PROPEN_01755 [Proteus penneri ATCC 35198]
          Length = 180

 Score =  123 bits (309), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 55/142 (38%), Positives = 80/142 (56%), Gaps = 8/142 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LKE +  F   +R       + F  + T  YP E  + +PR+RG   L R P+GEERC
Sbjct: 1   MTLKELLTGFGTQVRSIWMIGLHAFAKRETQMYPEEPVNVAPRYRGRIVLTRDPDGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC A+CP   I+++      DG      + I+  +CI+CGLC+EACP  A+   P+
Sbjct: 61  VACNLCAAVCPVGCISLQKAE-HEDGRWYPEFFRINFSRCIFCGLCEEACPTTALQLTPD 119

Query: 124 FEFATETRQELYYDKERLLNNG 145
           FE     RQ+L Y+K+ LL +G
Sbjct: 120 FEMGEFKRQDLVYEKDDLLISG 141


>gi|297570904|ref|YP_003696678.1| NADH-quinone oxidoreductase, chain I [Arcanobacterium haemolyticum
           DSM 20595]
 gi|296931251|gb|ADH92059.1| NADH-quinone oxidoreductase, chain I [Arcanobacterium haemolyticum
           DSM 20595]
          Length = 227

 Score =  123 bits (309), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 47/135 (34%), Positives = 69/135 (51%), Gaps = 9/135 (6%)

Query: 17  VGAFFLCLRYFFKAKTTINY----PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           V  F +     F+   T  Y    P +K    PR+ G H L RY +G E+CI C+LC   
Sbjct: 29  VAGFGVTFSTLFRPAVTEQYLPHKPEQKTPPRPRYHGMHRLNRYADGLEKCIGCELCAWA 88

Query: 73  CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           CPA AI +E      G +   G R    Y I+ ++CI+C  C +ACP  A+     +E A
Sbjct: 89  CPADAIYVEAASNKPGEQYSPGERYGRVYQINYLRCIFCSYCIQACPTRALTMSTEYEVA 148

Query: 128 TETRQELYYDKERLL 142
            ++R+ L Y+K+ +L
Sbjct: 149 DQSRESLIYEKQDIL 163


>gi|242239961|ref|YP_002988142.1| NADH dehydrogenase subunit I [Dickeya dadantii Ech703]
 gi|242132018|gb|ACS86320.1| NADH-quinone oxidoreductase, chain I [Dickeya dadantii Ech703]
          Length = 180

 Score =  123 bits (309), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 55/142 (38%), Positives = 76/142 (53%), Gaps = 8/142 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LKE +  F   +R         FK + T  YP E  +  PRFRG   L R P+G+ERC
Sbjct: 1   MTLKELLIGFGTQVRSICMVGSNAFKKRETKMYPEEPVNPPPRFRGRIVLTRDPDGQERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC   CP   I+++       G      + I+  +CI+CG+C+EACP  AI   P+
Sbjct: 61  VACNLCAVACPVGCISLQKAEMKD-GRWYPEFFRINFSRCIFCGMCEEACPTTAIQLTPD 119

Query: 124 FEFATETRQELYYDKERLLNNG 145
           FE     RQ+L Y+KE LL +G
Sbjct: 120 FEMGEFKRQDLVYEKEDLLISG 141


>gi|117618050|ref|YP_856311.1| NADH dehydrogenase subunit I [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|156632700|sp|A0KJ60|NUOI_AERHH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|117559457|gb|ABK36405.1| NADH-quinone oxidoreductase chain i [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 180

 Score =  123 bits (309), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 50/129 (38%), Positives = 75/129 (58%), Gaps = 1/129 (0%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           + +  +   + +  + T+NYP +    +PR+RG   L R P+G+ERC+AC LC   CP  
Sbjct: 14  LRSLGMVFSHAWSPRETLNYPEQAVYAAPRYRGRIVLTRDPDGDERCVACNLCAVACPVG 73

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
            I+++   R  DG      + I+  +CI+CGLC+EACP  AI   P+FE     RQ+L Y
Sbjct: 74  CISLQKSER-EDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDFEMGEYRRQDLVY 132

Query: 137 DKERLLNNG 145
           +KE LL +G
Sbjct: 133 EKEDLLISG 141


>gi|46446201|ref|YP_007566.1| NADH-ubiquinone oxidoreductase chain I [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399842|emb|CAF23291.1| probable NADH-ubiquinone oxidoreductase chain I [Candidatus
           Protochlamydia amoebophila UWE25]
          Length = 143

 Score =  123 bits (309), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 50/129 (38%), Positives = 73/129 (56%), Gaps = 5/129 (3%)

Query: 20  FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79
             + L++ F+   T+ YP EK     R RG H L ++ +G ERC+ C+LC  +CPAQAI 
Sbjct: 1   MIIVLKHAFQTPVTLRYPEEKRILPARSRGRHYLTKWNDGLERCVGCELCAIVCPAQAIY 60

Query: 80  -----IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134
                 E G     G R    + I+M++CI+CG C+EACP  AIV    +E +  TR+++
Sbjct: 61  VKPAANEPGHIHSHGERYASDFQINMLRCIFCGYCEEACPTGAIVLSNQYELSAYTREDM 120

Query: 135 YYDKERLLN 143
            Y K+RL  
Sbjct: 121 IYTKDRLTE 129


>gi|291296248|ref|YP_003507646.1| NADH-quinone oxidoreductase chain I [Meiothermus ruber DSM 1279]
 gi|290471207|gb|ADD28626.1| NADH-quinone oxidoreductase, chain I [Meiothermus ruber DSM 1279]
          Length = 177

 Score =  123 bits (309), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 56/155 (36%), Positives = 79/155 (50%), Gaps = 10/155 (6%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           +     +  + L+  F    TI YP       PRF G H L R+PNG E+CI C LC A 
Sbjct: 3   IAALAQSMGITLKALFSKPVTIPYPDAPVPLKPRFHGRHVLTRHPNGLEKCIGCSLCAAA 62

Query: 73  CPAQAITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           CPA AI +E+     +     G R    Y+I+M++CI+CG+C+EACP  A+V G +FE A
Sbjct: 63  CPAYAIYVEAAENDPNNPVSAGERYARVYEINMLRCIFCGMCEEACPTGAVVMGYDFEMA 122

Query: 128 TETRQELYYDKERLLNNGDRWESEIVRNIVTDSPY 162
                +  Y KE +L      E E  +    ++ Y
Sbjct: 123 DYRYSDFVYGKEDMLV-----EVEGTKPQRREAAY 152


>gi|251789021|ref|YP_003003742.1| NADH dehydrogenase subunit I [Dickeya zeae Ech1591]
 gi|271501261|ref|YP_003334286.1| NADH-quinone oxidoreductase subunit I [Dickeya dadantii Ech586]
 gi|247537642|gb|ACT06263.1| NADH-quinone oxidoreductase, chain I [Dickeya zeae Ech1591]
 gi|270344816|gb|ACZ77581.1| NADH-quinone oxidoreductase, chain I [Dickeya dadantii Ech586]
          Length = 180

 Score =  123 bits (309), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 55/142 (38%), Positives = 76/142 (53%), Gaps = 8/142 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LKE +  F   +R         FK + T  YP E  +  PRFRG   L R P+G+ERC
Sbjct: 1   MTLKELLIGFGTQVRSICMVGSNAFKKRETKMYPEEPVNPPPRFRGRIVLTRDPDGQERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC   CP   I+++       G      + I+  +CI+CG+C+EACP  AI   P+
Sbjct: 61  VACNLCAVACPVGCISLQKAEMKD-GRWYPEFFRINFSRCIFCGMCEEACPTTAIQLTPD 119

Query: 124 FEFATETRQELYYDKERLLNNG 145
           FE     RQ+L Y+KE LL +G
Sbjct: 120 FEMGEFKRQDLVYEKEDLLISG 141


>gi|81337046|sp|Q4QSC5|NQO9_RHOMR RecName: Full=NADH-quinone oxidoreductase subunit 9; AltName:
           Full=NADH dehydrogenase I subunit 9; AltName: Full=NDH-1
           subunit 9
 gi|66219944|gb|AAY42993.1| Nqo9 [Rhodothermus marinus]
          Length = 230

 Score =  123 bits (309), Expect = 7e-27,   Method: Composition-based stats.
 Identities = 46/153 (30%), Positives = 71/153 (46%), Gaps = 2/153 (1%)

Query: 11  LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70
           L+L   V       R     + T  YP E       +RG   L    NG  RC+AC LC 
Sbjct: 22  LYLPAVVQGLAYTWRKMRSPRYTFQYPDELWYPPDSYRGRPVLVE-ENGRPRCVACGLCA 80

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
             CP  AI++++        R    ++I+M++CIYCG C+E CP +AIV    ++   ++
Sbjct: 81  RACPPLAISMQAKEVDDVKEREPAWFEINMLRCIYCGYCEEVCPEEAIVMSKEYDLTFQS 140

Query: 131 RQELYYDKERLLNNGDRWESEIV-RNIVTDSPY 162
           R E  +  E+LL   +R +  +   +   D  Y
Sbjct: 141 RDEAIFGLEKLLVPAERLKDRLEWLDRYKDPQY 173


>gi|315615550|gb|EFU96182.1| NADH-quinone oxidoreductase, chain I family protein [Escherichia
           coli 3431]
          Length = 175

 Score =  123 bits (309), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 52/129 (40%), Positives = 72/129 (55%), Gaps = 1/129 (0%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V + ++   + F  + T  YP E     PR+RG   L R P+GEERC+AC LC   CP  
Sbjct: 9   VRSIWMIGLHAFAKRETRMYPEEPVYLPPRYRGRIVLTRDPDGEERCVACNLCAVACPVG 68

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
            I+++      DG      + I+  +CI+CGLC+EACP  AI   P+FE     RQ+L Y
Sbjct: 69  CISLQKAE-TKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDFEMGEYKRQDLVY 127

Query: 137 DKERLLNNG 145
           +KE LL +G
Sbjct: 128 EKEDLLISG 136


>gi|197285613|ref|YP_002151485.1| NADH dehydrogenase subunit I [Proteus mirabilis HI4320]
 gi|227356116|ref|ZP_03840506.1| NADH-quinone oxidoreductase chain I [Proteus mirabilis ATCC 29906]
 gi|226737407|sp|B4EZC3|NUOI_PROMH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|194683100|emb|CAR43657.1| NADH-quinone oxidoreductase chain I [Proteus mirabilis HI4320]
 gi|227163761|gb|EEI48673.1| NADH-quinone oxidoreductase chain I [Proteus mirabilis ATCC 29906]
          Length = 180

 Score =  123 bits (309), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 56/142 (39%), Positives = 80/142 (56%), Gaps = 8/142 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LKE V  F   +R       + F  + T  YP E  + +PR+RG   L R P+GEERC
Sbjct: 1   MTLKELVTGFGTQVRSIWMIGLHAFAKRETQMYPEEPVNVAPRYRGRIVLTRDPDGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC A+CP   I+++      DG      + I+  +CI+CGLC+EACP  A+   P+
Sbjct: 61  VACNLCAAVCPVGCISLQKAE-HEDGRWYPEFFRINFSRCIFCGLCEEACPTTALQLTPD 119

Query: 124 FEFATETRQELYYDKERLLNNG 145
           FE     RQ+L Y+K+ LL +G
Sbjct: 120 FEMGEFKRQDLVYEKDDLLISG 141


>gi|325105659|ref|YP_004275313.1| NADH dehydrogenase subunit I [Pedobacter saltans DSM 12145]
 gi|324974507|gb|ADY53491.1| NADH dehydrogenase subunit I [Pedobacter saltans DSM 12145]
          Length = 175

 Score =  123 bits (309), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 52/149 (34%), Positives = 78/149 (52%), Gaps = 10/149 (6%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M  +      ++L        +  ++ FK K TI YPFE+   S  +RG H+L+R   G 
Sbjct: 16  MNFWER----MYLPAIAQGLSITFKHLFKKKVTIQYPFEEREFSNNWRGMHSLKRDEQGR 71

Query: 61  ERCIACKLCEAICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQEACP 114
           ERC AC LC   CPA+AIT+ S  R           +    Y+I+M++CI+CGLC+EACP
Sbjct: 72  ERCTACGLCALSCPAEAITMISAERKKGEENLYREEKYAAVYEINMLRCIFCGLCEEACP 131

Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLN 143
            +AI        +   R++  Y K++L+ 
Sbjct: 132 KEAIYLDGPIVPSDYLRKDFIYGKDKLVE 160


>gi|327403952|ref|YP_004344790.1| NADH dehydrogenase subunit I [Fluviicola taffensis DSM 16823]
 gi|327319460|gb|AEA43952.1| NADH dehydrogenase subunit I [Fluviicola taffensis DSM 16823]
          Length = 179

 Score =  123 bits (309), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 49/147 (33%), Positives = 77/147 (52%), Gaps = 6/147 (4%)

Query: 7   NVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIAC 66
            +  ++    +G  ++ L++ FK   T+ YP  K   +P +RG+H L+R   G E C AC
Sbjct: 18  FMEKMYFPAILGGMWITLKHVFKKHNTVKYPEVKREFAPVYRGQHVLKRDEEGRENCTAC 77

Query: 67  KLCEAICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            LC   CPA+AIT+ S  R           +    Y+I+M++CI+CGLC+EACP +AI  
Sbjct: 78  GLCAVACPAEAITMTSEERKKGEEHLYREEKYATTYEINMLRCIFCGLCEEACPKEAIFL 137

Query: 121 GPNFEFATETRQELYYDKERLLNNGDR 147
                     R +  Y K++L+   D+
Sbjct: 138 TDRIVPTYFERNDFIYGKDKLVEPVDQ 164


>gi|307131807|ref|YP_003883823.1| NADH:ubiquinone oxidoreductase subunit I [Dickeya dadantii 3937]
 gi|306529336|gb|ADM99266.1| NADH:ubiquinone oxidoreductase, chain I [Dickeya dadantii 3937]
          Length = 180

 Score =  123 bits (308), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 54/142 (38%), Positives = 76/142 (53%), Gaps = 8/142 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LKE +  F   +R         FK + T  YP E  +  PRFRG   L R P+G+ERC
Sbjct: 1   MTLKELLIGFGTQVRSICMVGSNAFKKRETKMYPEEPVNPPPRFRGRIVLTRDPDGQERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC   CP   I+++       G      + I+  +CI+CG+C+EACP  AI   P+
Sbjct: 61  VACNLCAVACPVGCISLQKAEMKD-GRWYPEFFRINFSRCIFCGMCEEACPTTAIQLTPD 119

Query: 124 FEFATETRQELYYDKERLLNNG 145
           FE     RQ+L Y+K+ LL +G
Sbjct: 120 FEMGEFKRQDLVYEKDDLLISG 141


>gi|254442137|ref|ZP_05055613.1| NADH-quinone oxidoreductase, chain I subfamily [Verrucomicrobiae
           bacterium DG1235]
 gi|198256445|gb|EDY80753.1| NADH-quinone oxidoreductase, chain I subfamily [Verrucomicrobiae
           bacterium DG1235]
          Length = 180

 Score =  123 bits (308), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 47/146 (32%), Positives = 72/146 (49%), Gaps = 6/146 (4%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYF-FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64
             +  L++ E      +  R   F    T+ YP ++      +RG   L R P G E+C+
Sbjct: 11  NLLEKLYIPEIARGLAVTFRRMLFGETVTLEYPEQRPPIPAGYRGVPTLVRDPEGREKCV 70

Query: 65  ACKLCEAICPAQAITIESGPRCH-----DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           +C+LCE +CP +AI I  G            +    +DIDM++CIYCG+CQE CP +AI 
Sbjct: 71  SCQLCEFVCPPKAIRITPGEIPEDSEYAHVEKGPKEFDIDMLRCIYCGMCQEVCPEEAIW 130

Query: 120 EGPNFEFATETRQELYYDKERLLNNG 145
               +  +  +R E+  DK +L   G
Sbjct: 131 LQNQYSMSGYSRAEMVNDKTKLYELG 156


>gi|322831991|ref|YP_004212018.1| NADH-quinone oxidoreductase, chain I [Rahnella sp. Y9602]
 gi|321167192|gb|ADW72891.1| NADH-quinone oxidoreductase, chain I [Rahnella sp. Y9602]
          Length = 180

 Score =  123 bits (308), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 50/129 (38%), Positives = 71/129 (55%), Gaps = 1/129 (0%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V + ++   + F  + T  YP    +  PR+RG   L R P+GEERC+AC LC   CP  
Sbjct: 14  VRSLWMIGMHAFAKRETQMYPEVPVNPPPRYRGRIVLTRDPDGEERCVACNLCAVACPVG 73

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
            I+++       G      + I+  +CI+CGLC+EACP  AI   P+FE     RQ+L Y
Sbjct: 74  CISLQKAEMKD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDFELGEFKRQDLVY 132

Query: 137 DKERLLNNG 145
           +KE LL +G
Sbjct: 133 EKEDLLISG 141


>gi|262280139|ref|ZP_06057924.1| NADH-quinone oxidoreductase subunit I [Acinetobacter calcoaceticus
           RUH2202]
 gi|262260490|gb|EEY79223.1| NADH-quinone oxidoreductase subunit I [Acinetobacter calcoaceticus
           RUH2202]
          Length = 180

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 52/135 (38%), Positives = 72/135 (53%), Gaps = 3/135 (2%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGS--TSPRFRGEHALRRYPNGEERCIACKLCE 70
               V + F+   +  + + TI YP         PRFRG   L R P+GEERC+AC LC 
Sbjct: 8   FGSIVRSLFMVFSHVTRKRDTILYPEVPAEQIVPPRFRGRIVLTRDPDGEERCVACNLCA 67

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
             CP   I+++      DG      + I+  +CI+CG+C+EACP  AI   P+FE     
Sbjct: 68  VACPVGCISLQKAE-TEDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQMTPDFELGEYV 126

Query: 131 RQELYYDKERLLNNG 145
           RQ+L Y+KE LL +G
Sbjct: 127 RQDLVYEKENLLISG 141


>gi|15616781|ref|NP_239993.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11133970|sp|P57259|NUOI_BUCAI RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|25282723|pir||G84948 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain I [imported] -
           Buchnera sp. (strain APS)
 gi|10038844|dbj|BAB12879.1| NADH dehydrogenase I chain I [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 180

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 51/140 (36%), Positives = 75/140 (53%), Gaps = 2/140 (1%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
            N+   F  +    F +     F    T  YP EK   +PR+RG   L R  +G+ERC+A
Sbjct: 4   KNIIIGFFTQIRSIFMIGA-NIFSKPETKLYPEEKVYLAPRYRGRIILTRNIDGQERCVA 62

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           C LC  +CP   I+++   +   G      + I+  +CI+CGLC+EACP  AI   P+FE
Sbjct: 63  CNLCAVVCPVDCISLQKSEKTD-GRWYPKFFRINFSRCIFCGLCEEACPTAAIQLMPDFE 121

Query: 126 FATETRQELYYDKERLLNNG 145
            +   RQ+L Y+K+ LL +G
Sbjct: 122 LSDFKRQDLVYEKKDLLISG 141


>gi|146298998|ref|YP_001193589.1| NADH-quinone oxidoreductase, chain I [Flavobacterium johnsoniae
           UW101]
 gi|146153416|gb|ABQ04270.1| NADH dehydrogenase subunit I [Flavobacterium johnsoniae UW101]
          Length = 181

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 51/143 (35%), Positives = 78/143 (54%), Gaps = 8/143 (5%)

Query: 7   NVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIAC 66
            +  L+L   V    + L++ F+ K TI+YP +    SP +RG+H L+R   G E C AC
Sbjct: 22  FIERLYLVAIVKGLAITLKHLFRKKITIHYPEQVREMSPVYRGQHMLKRDEQGRENCTAC 81

Query: 67  KLCEAICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            LC   CPA+AIT+++  R           +    Y+I+M++CI+CGLC+EACP DAI  
Sbjct: 82  GLCALSCPAEAITMKAAERKADEKHLYREEKYAEIYEINMLRCIFCGLCEEACPKDAIYL 141

Query: 121 G--PNFEFATETRQELYYDKERL 141
                   A   R++  + K++L
Sbjct: 142 TTSKVLVPANYDREDFIFGKDKL 164


>gi|397906|emb|CAA48368.1| NADH dehydrogenase I, subunit nuoI [Escherichia coli]
          Length = 179

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 55/141 (39%), Positives = 74/141 (52%), Gaps = 7/141 (4%)

Query: 11  LFLKEFVGAFFLCLRYFF------KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64
           + LKE +  F   +R  +          T  YP E     PR+RG   L R P+GEERC+
Sbjct: 1   MTLKELLVGFGTQVRSIWMIGLHGSPNQTRMYPEEPVYLPPRYRGRIVLTRDPDGEERCV 60

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           AC LC   CP   I+++      DG      + I+  +CI+CGLC+EACP  AI   P+F
Sbjct: 61  ACNLCAVACPVGCISLQKAE-TKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDF 119

Query: 125 EFATETRQELYYDKERLLNNG 145
           E     RQ+L Y+KE LL +G
Sbjct: 120 EMGEYKRQDLVYEKEDLLISG 140


>gi|219681536|ref|YP_002467921.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|219682092|ref|YP_002468476.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|257471217|ref|ZP_05635216.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219621825|gb|ACL29981.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219624379|gb|ACL30534.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|311085903|gb|ADP65985.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086476|gb|ADP66557.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
 gi|311087057|gb|ADP67137.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
 gi|311087614|gb|ADP67693.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 180

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 51/140 (36%), Positives = 75/140 (53%), Gaps = 2/140 (1%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
            N+   F  +    F +     F    T  YP EK   +PR+RG   L R  +G+ERC+A
Sbjct: 4   KNIIIGFFTQIRSIFMIGA-NIFSKPETKLYPEEKVYLAPRYRGRIILTRNIDGQERCVA 62

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           C LC  +CP   I+++   +   G      + I+  +CI+CGLC+EACP  AI   P+FE
Sbjct: 63  CNLCAVVCPVDCISLQKSEKTD-GRWYPKFFRINFSRCIFCGLCEEACPTAAIQLMPDFE 121

Query: 126 FATETRQELYYDKERLLNNG 145
            +   RQ+L Y+K+ LL +G
Sbjct: 122 LSDFKRQDLVYEKKDLLISG 141


>gi|283850899|ref|ZP_06368185.1| NADH-quinone oxidoreductase, chain I [Desulfovibrio sp. FW1012B]
 gi|283573822|gb|EFC21796.1| NADH-quinone oxidoreductase, chain I [Desulfovibrio sp. FW1012B]
          Length = 187

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 49/120 (40%), Positives = 66/120 (55%), Gaps = 1/120 (0%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            L + F+   T  YP  K     R RG   L R P+G ERC+AC LC  +CP   I+++S
Sbjct: 28  TLTHLFRKPVTEQYPEYKRPLPARTRGRIILTRSPDGRERCVACYLCSGVCPVNCISMQS 87

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLL 142
                DG R+   + I+  +CIYCGLC+EACP  AI   P F F+ +   +  Y+KE LL
Sbjct: 88  EE-GPDGRRQAAWFRINFARCIYCGLCEEACPTLAIQLTPEFAFSKDAIADFVYEKEDLL 146


>gi|238898693|ref|YP_002924374.1| NADH dehydrogenase I chain I, 2Fe-2S ferredoxin-related [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229466452|gb|ACQ68226.1| NADH dehydrogenase I chain I, 2Fe-2S ferredoxin-related [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 180

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 49/129 (37%), Positives = 72/129 (55%), Gaps = 1/129 (0%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           + + ++   + F  + T  YP +     PR+RG   L R P+GEERC+AC LC   CP  
Sbjct: 14  LRSLWMIGLHAFHKRETQMYPEKPVYLPPRYRGRIVLTRDPDGEERCVACNLCAVACPVG 73

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
            I+++   +   G      + I+  +CI+CGLC+EACP  AI   P+FE     RQ+L Y
Sbjct: 74  CISLQKAEKKD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDFEMGEFKRQDLVY 132

Query: 137 DKERLLNNG 145
           +KE LL +G
Sbjct: 133 EKEDLLISG 141


>gi|182412302|ref|YP_001817368.1| NADH-quinone oxidoreductase, chain I [Opitutus terrae PB90-1]
 gi|177839516|gb|ACB73768.1| NADH-quinone oxidoreductase, chain I [Opitutus terrae PB90-1]
          Length = 180

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 48/139 (34%), Positives = 76/139 (54%), Gaps = 5/139 (3%)

Query: 12  FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71
           ++ + +G      R+  + K T+ YP ++ +  P +RG   L + PNG E+C++C+LCE 
Sbjct: 18  YIPQILGGLKTTFRHLVRKKQTMEYPEQRPAIPPGYRGVPTLVKDPNGREKCVSCQLCEF 77

Query: 72  ICPAQAITIESGP-----RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
           +CP +AI I  G            R    ++IDM++CIYCG+CQE CP +AI     +  
Sbjct: 78  VCPPKAIRIWPGEIAADAPTAHVERAPREFEIDMLRCIYCGMCQEVCPEEAIFLQQQYTM 137

Query: 127 ATETRQELYYDKERLLNNG 145
              TR E+  +K+RL   G
Sbjct: 138 TGYTRAEMVNNKQRLYELG 156


>gi|300782459|ref|YP_003762750.1| NADH dehydrogenase I subunit I [Amycolatopsis mediterranei U32]
 gi|299791973|gb|ADJ42348.1| NADH dehydrogenase I subunit I [Amycolatopsis mediterranei U32]
          Length = 174

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 51/136 (37%), Positives = 68/136 (50%), Gaps = 5/136 (3%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
             + V  F +     FK   T  YP      +PR+ G H L R+P+G E+C+ C+LC   
Sbjct: 3   FLDPVKGFGVTFGMMFKKVATEEYPEAGAPAAPRYHGRHQLNRHPDGLEKCVGCELCAWA 62

Query: 73  CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           CPA AI +E        R   G R    Y I+ ++CI CGLC EACP  ++     +E A
Sbjct: 63  CPADAIFVEGGDNTEEARFSPGERYGADYQINYLRCIGCGLCIEACPTRSLTMINFYELA 122

Query: 128 TETRQELYYDKERLLN 143
            + RQ L Y KE LL 
Sbjct: 123 DDDRQRLIYTKEDLLA 138


>gi|238920560|ref|YP_002934075.1| NADH dehydrogenase subunit I [Edwardsiella ictaluri 93-146]
 gi|269139723|ref|YP_003296424.1| formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
           kD subunit (chain I) [Edwardsiella tarda EIB202]
 gi|294637172|ref|ZP_06715480.1| NADH-quinone oxidoreductase subunit I [Edwardsiella tarda ATCC
           23685]
 gi|259514773|sp|C5B8H9|NUOI_EDWI9 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|238870129|gb|ACR69840.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
 gi|267985384|gb|ACY85213.1| formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
           kD subunit (chain I) [Edwardsiella tarda EIB202]
 gi|291089636|gb|EFE22197.1| NADH-quinone oxidoreductase subunit I [Edwardsiella tarda ATCC
           23685]
 gi|304559590|gb|ADM42254.1| NADH-ubiquinone oxidoreductase chain I [Edwardsiella tarda FL6-60]
          Length = 180

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 54/142 (38%), Positives = 75/142 (52%), Gaps = 8/142 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LKE V  F   +R       + F  + T  YP E     PR+RG   L R P+G ERC
Sbjct: 1   MTLKELVVGFGTQVRSLWMIGLHAFAKRETKMYPEEPVYLPPRYRGRIVLTRDPDGAERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC   CP   I+++      DG      + I+  +CI+CG+C+EACP  A+   P+
Sbjct: 61  VACNLCAVACPVGCISLQKAE-TEDGRWYPEFFRINFSRCIFCGMCEEACPTTALQLTPD 119

Query: 124 FEFATETRQELYYDKERLLNNG 145
           FE     RQ+L Y+KE LL +G
Sbjct: 120 FEMGEFRRQDLVYEKEDLLISG 141


>gi|91065090|gb|ABE03922.1| NuoI [Theonella swinhoei bacterial symbiont clone pSW1H8]
          Length = 145

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 56/136 (41%), Positives = 73/136 (53%), Gaps = 6/136 (4%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEERCIACKLCEA 71
           L +      + L   FK   T+ YP +  +  PRFRG H L R    G E+CI C LC A
Sbjct: 3   LFDIARGMGVTLGQLFKRPITVRYPEQPVALEPRFRGRHHLLRHPDTGLEKCIGCSLCAA 62

Query: 72  ICPAQAITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
            CPA AI +E+     +     G R    Y+I+M++CI+CGLC+EACP  AIV G  FE 
Sbjct: 63  ACPAYAIYVEAAENDPEAPVSAGERYASIYEINMLRCIFCGLCEEACPTGAIVLGHEFEL 122

Query: 127 ATETRQELYYDKERLL 142
           A    Q+  Y KE L+
Sbjct: 123 ADFRYQDFVYGKEDLM 138


>gi|50083956|ref|YP_045466.1| NADH dehydrogenase subunit I [Acinetobacter sp. ADP1]
 gi|81393674|sp|Q6FE64|NUOI_ACIAD RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|49529932|emb|CAG67644.1| NADH dehydrogenase I chain I, 2Fe-2S ferredoxin-related
           [Acinetobacter sp. ADP1]
          Length = 180

 Score =  122 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 50/133 (37%), Positives = 72/133 (54%), Gaps = 3/133 (2%)

Query: 15  EFVGAFFLCLRYFFKAKTTINYPFEKGS--TSPRFRGEHALRRYPNGEERCIACKLCEAI 72
             V   ++   +  + + TI YP         PR+RG   L R P+GEERC+AC LC   
Sbjct: 10  SIVRTLWMVFTHITRKRDTILYPEVPAEEIVPPRYRGRIVLTRDPDGEERCVACNLCAVA 69

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           CP   I+++   +  DG      + I+  +CI+CG+C+EACP  AI   P+FE     RQ
Sbjct: 70  CPVGCISLQKAEK-EDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQMTPDFELGEYVRQ 128

Query: 133 ELYYDKERLLNNG 145
           +L Y+KE LL +G
Sbjct: 129 DLVYEKENLLISG 141


>gi|332662321|ref|YP_004445109.1| NAD(P)H-quinone oxidoreductase subunit I [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332331135|gb|AEE48236.1| NAD(P)H-quinone oxidoreductase subunit I [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 176

 Score =  122 bits (306), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 50/139 (35%), Positives = 70/139 (50%), Gaps = 6/139 (4%)

Query: 11  LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70
           ++L    G   +   + FK   T+ YP +    S  FRG+H L+R   G E C AC LC 
Sbjct: 21  MYLPAIAGGLRVTFSHMFKKSATVQYPEQVREHSAVFRGQHVLKRDAEGRENCTACGLCA 80

Query: 71  AICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
             CPA+AITI +  R           +    YDI+M++CI+CGLC+EACP DAI      
Sbjct: 81  VACPAEAITIVAEERKKGEEHLYREEKYAAVYDINMLRCIFCGLCEEACPKDAIYLTDRI 140

Query: 125 EFATETRQELYYDKERLLN 143
             +   R +  + KE L+ 
Sbjct: 141 VTSNYERADFIFHKEDLVE 159


>gi|268318172|ref|YP_003291891.1| NADH-quinone oxidoreductase, chain I [Rhodothermus marinus DSM
           4252]
 gi|262335706|gb|ACY49503.1| NADH-quinone oxidoreductase, chain I [Rhodothermus marinus DSM
           4252]
          Length = 230

 Score =  122 bits (306), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 2/153 (1%)

Query: 11  LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70
           L+L   V       R       T  YP E       +RG   L    NG  RC+AC LC 
Sbjct: 22  LYLPAVVQGLAYTWRKMRSPLYTFQYPDELWYPPDSYRGRPVLVE-ENGRPRCVACGLCA 80

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
             CP  AI++++        R    ++I+M++CIYCG C+E CP +AIV    ++   ++
Sbjct: 81  RACPPLAISMQAKEVDDVKEREPAWFEINMLRCIYCGYCEEVCPEEAIVMSKEYDLTFQS 140

Query: 131 RQELYYDKERLLNNGDRWESEIV-RNIVTDSPY 162
           R E  +  E+LL   +R +  +   +   D  Y
Sbjct: 141 RDEAIFGLEKLLVPAERLKDRLEWLDRYKDPQY 173


>gi|237751588|ref|ZP_04582068.1| NADH-ubiquinone oxidoreductase [Helicobacter bilis ATCC 43879]
 gi|229372954|gb|EEO23345.1| NADH-ubiquinone oxidoreductase [Helicobacter bilis ATCC 43879]
          Length = 206

 Score =  122 bits (306), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 58/145 (40%), Positives = 76/145 (52%), Gaps = 3/145 (2%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62
           F+ +V      + +    L ++ FF    TINYPFE    SPR+R  H L R   +G ER
Sbjct: 34  FKRSVKLSLGADIIKGLGLTIKEFFSKPVTINYPFETQPLSPRYRAVHNLQRMLESGSER 93

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C LCE IC +  I I +     DG ++   Y I++ +CIYCGLC E CP  AIV G 
Sbjct: 94  CIGCGLCEKICTSNCIRILTHE-GEDGRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 152

Query: 123 NFEFATETRQELYYDKERLLNNGDR 147
            FE A+E R      KE  L + + 
Sbjct: 153 RFENASEQRAHFGL-KEDFLKDLEE 176


>gi|163751853|ref|ZP_02159068.1| NADH dehydrogenase subunit I [Shewanella benthica KT99]
 gi|161328269|gb|EDP99431.1| NADH dehydrogenase subunit I [Shewanella benthica KT99]
          Length = 171

 Score =  122 bits (306), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 52/129 (40%), Positives = 69/129 (53%), Gaps = 1/129 (0%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           +      L++ F    T+ YP +K   SPR+RG   L R P+GEERC+AC LC   CP  
Sbjct: 5   IRTLITILKHTFTPADTVQYPEQKPYLSPRYRGRIVLTRDPDGEERCVACNLCSVACPVD 64

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
            I++E   +   G      + I+  +CI CG C+EACP  AI   P+FE A   RQ L Y
Sbjct: 65  CISVEKTEKPD-GRWEAKTFTINFSRCIMCGFCEEACPTHAIQLTPDFEMAEYDRQNLVY 123

Query: 137 DKERLLNNG 145
           +K  LL  G
Sbjct: 124 EKHHLLIAG 132


>gi|297625736|ref|YP_003687499.1| NADH-quinone oxidoreductase subunit I (NADH dehydrogenase I subunit
           I) (NDH-1 subunit I) [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296921501|emb|CBL56055.1| NADH-quinone oxidoreductase subunit I (NADH dehydrogenase I subunit
           I) (NDH-1 subunit I) [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 190

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 53/134 (39%), Positives = 72/134 (53%), Gaps = 7/134 (5%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFE--KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP 74
              F +  R  F+   T  YP +  +   +PRF G H L R+P+G E+C+ C+LC   CP
Sbjct: 4   WSGFGITFRTMFRKSFTQGYPEKGKERLVAPRFHGRHQLNRWPDGLEKCVGCELCSWACP 63

Query: 75  AQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           A AI +E        R   G R    Y I+ ++CI CG+C EACP  A+     F+ A E
Sbjct: 64  ADAIYVEGADNTEEERYSPGERYGRVYQINYLRCILCGMCIEACPTRALTMTNEFKLADE 123

Query: 130 TRQELYYDKERLLN 143
           TR+ L YDK+RLL 
Sbjct: 124 TRESLIYDKDRLLA 137


>gi|150026254|ref|YP_001297080.1| NADH dehydrogenase I, I subunit [Flavobacterium psychrophilum
           JIP02/86]
 gi|156633518|sp|A6H1Q5|NUOI_FLAPJ RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|149772795|emb|CAL44279.1| NADH dehydrogenase I, I subunit [Flavobacterium psychrophilum
           JIP02/86]
          Length = 183

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 51/148 (34%), Positives = 81/148 (54%), Gaps = 8/148 (5%)

Query: 7   NVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIAC 66
            +  L+L   V    + +++FF+ K TI+YP +    SP +RG+H L+R   G E C AC
Sbjct: 24  FLESLYLVAIVKGLLITIKHFFRKKVTIHYPEQVREMSPVYRGQHMLKRDEQGRENCTAC 83

Query: 67  KLCEAICPAQAITIESGPRCHDGT------RRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            LC   CPA+AIT+++  R  +        +    Y+I+M++CI+CGLC+EACP DAI  
Sbjct: 84  GLCALSCPAEAITMKAAERKSNEKHLYREEKYAEIYEINMLRCIFCGLCEEACPKDAIYL 143

Query: 121 G--PNFEFATETRQELYYDKERLLNNGD 146
                   +   R+   + K++L+   D
Sbjct: 144 TTSKVLVPSNYERENFIFGKDKLVMPLD 171


>gi|284106853|ref|ZP_06386296.1| NADH dehydrogenase subunit I [Candidatus Poribacteria sp. WGA-A3]
 gi|283830032|gb|EFC34308.1| NADH dehydrogenase subunit I [Candidatus Poribacteria sp. WGA-A3]
          Length = 179

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 56/163 (34%), Positives = 88/163 (53%), Gaps = 3/163 (1%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFK-AKTTINYPFEKGSTSPRFRGEHALRRYPNG 59
           M++ +   S +F  E +      L++F K    T+ YP  K      +RG   L RY + 
Sbjct: 1   MKLKKWIQSLIFF-EILLGMRETLKHFLKYRPITLEYPHVKKPLPENYRGMLGLLRYDDE 59

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR-YDIDMIKCIYCGLCQEACPVDAI 118
            E+C+ C LCEA CP++ I + S     + T+R  + Y +DM +C++CGLC +ACPVDA+
Sbjct: 60  TEKCVGCDLCEAACPSRVIRVVSAEVPGEPTKRFAKEYYMDMTRCLFCGLCVDACPVDAL 119

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161
                FE+A   ++ L+ +KE+LL  GDR   E  + +    P
Sbjct: 120 GMSQEFEWAVYDKRHLHLNKEQLLAIGDRAFPEREKRLEFQHP 162


>gi|148266246|ref|YP_001232952.1| NADH-quinone oxidoreductase, chain I [Geobacter uraniireducens Rf4]
 gi|146399746|gb|ABQ28379.1| NADH dehydrogenase subunit I [Geobacter uraniireducens Rf4]
          Length = 132

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 52/128 (40%), Positives = 76/128 (59%), Gaps = 2/128 (1%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +    + L++ F+   T+ YP E+    P FRG HAL    +   +C+AC LC  +CPA
Sbjct: 5   LLKGLQITLKHLFQKPVTLQYPDERPKIEPGFRGLHALNVSHD-RAKCVACYLCPTVCPA 63

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
           + IT+E+G    +  +   +Y+IDM++CI+CG C EACPVDAI     FE A+  RQ+  
Sbjct: 64  KCITVEAGED-ENHDKFAAKYEIDMLRCIFCGYCVEACPVDAIRMTDTFELASYKRQDFI 122

Query: 136 YDKERLLN 143
           + KERLL 
Sbjct: 123 FTKERLLE 130


>gi|115523735|ref|YP_780646.1| NADH dehydrogenase subunit I [Rhodopseudomonas palustris BisA53]
 gi|123321218|sp|Q07QW8|NUOI1_RHOP5 RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName:
           Full=NADH dehydrogenase I subunit I 1; AltName:
           Full=NDH-1 subunit I 1
 gi|115517682|gb|ABJ05666.1| NADH-quinone oxidoreductase, chain I [Rhodopseudomonas palustris
           BisA53]
          Length = 173

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 48/131 (36%), Positives = 65/131 (49%), Gaps = 1/131 (0%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
           ++       R  F    T+ YP  +    PR RG   L R P+G+ERC+AC LC   CP 
Sbjct: 6   WLEGLLRVGRKLFVKAETVQYPEVRPYLPPRSRGRIVLTRDPDGQERCVACNLCAVACPV 65

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
             I + +     DG      + I+  +CI+CG C+EACP  AI   P+FE +   R  L 
Sbjct: 66  GCIDL-AKAVAEDGRWYPEHFRINFARCIFCGYCEEACPTAAIQLTPDFELSEWRRDALV 124

Query: 136 YDKERLLNNGD 146
           YDK  LL  G+
Sbjct: 125 YDKHDLLIAGE 135


>gi|296124098|ref|YP_003631876.1| NADH-quinone oxidoreductase, chain I [Planctomyces limnophilus DSM
           3776]
 gi|296016438|gb|ADG69677.1| NADH-quinone oxidoreductase, chain I [Planctomyces limnophilus DSM
           3776]
          Length = 222

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 52/154 (33%), Positives = 73/154 (47%), Gaps = 11/154 (7%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFK-AKTTINYPFEKGSTSPRFRGEHALRRYPNG 59
           M  +       FL          LR+       T  YP EK      +RG H L R   G
Sbjct: 21  MGFWEST----FLPAIFSGLKNSLRHVTDFKPVTQQYPEEKPDLPLNYRGVHRLNRDDKG 76

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGT------RRTVRYDIDMIKCIYCGLCQEAC 113
             +C+AC +C   CPA+ I I +     D        +R   + ID +KCIYCG+C+EAC
Sbjct: 77  RVKCVACMMCSTACPARCIEIVAEEAPKDDPLWADRDKRPKSFVIDELKCIYCGMCEEAC 136

Query: 114 PVDAIVEGPNFEFATETRQELYYDKERLLNNGDR 147
           PVD+I     ++    TRQE+ ++KE+LL   D+
Sbjct: 137 PVDSIELTHIYDLTGMTRQEMKFNKEKLLEVFDQ 170


>gi|319789715|ref|YP_004151348.1| NADH-quinone oxidoreductase, chain I [Thermovibrio ammonificans
           HB-1]
 gi|317114217|gb|ADU96707.1| NADH-quinone oxidoreductase, chain I [Thermovibrio ammonificans
           HB-1]
          Length = 152

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/156 (34%), Positives = 80/156 (51%), Gaps = 5/156 (3%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M I +       + + +    + L+  FK   T++YPFEK     RFRG HAL+  P+G 
Sbjct: 1   MSILKKA----LMIDLLKGMKVTLKTAFKPTVTVHYPFEKVPPRERFRGIHALKLNPDGS 56

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            RC AC LC  +CP+  I +E      DG +  V + +D+ +C++CGLC EACP DAIV 
Sbjct: 57  YRCEACYLCAEMCPSNVIDMEMTE-GKDGKKELVDFTVDLTRCLFCGLCVEACPRDAIVM 115

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNI 156
              +EF+     +L   KE L+  G  ++       
Sbjct: 116 TDIYEFSQYEVGKLILHKEDLMKLGRYYQERERSRR 151


>gi|119595092|gb|EAW74686.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa
           (NADH-coenzyme Q reductase), isoform CRA_b [Homo
           sapiens]
 gi|119595094|gb|EAW74688.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa
           (NADH-coenzyme Q reductase), isoform CRA_b [Homo
           sapiens]
          Length = 172

 Score =  121 bits (304), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 82/121 (67%), Positives = 89/121 (73%), Gaps = 2/121 (1%)

Query: 1   MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59
           M+ +       L   E      + L Y F+   TINYPFEKG  SPRFRGEHALRRYP+G
Sbjct: 48  MKSVTDRAARTLLWTELFRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 107

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           EERCIACKLCEAICPAQAITIE+ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIV
Sbjct: 108 EERCIACKLCEAICPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 166

Query: 120 E 120
           E
Sbjct: 167 E 167


>gi|221633448|ref|YP_002522673.1| NADH-quinone oxidoreductase subunit i [Thermomicrobium roseum DSM
           5159]
 gi|221155537|gb|ACM04664.1| nadh-quinone oxidoreductase chain i [Thermomicrobium roseum DSM
           5159]
          Length = 220

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 51/132 (38%), Positives = 70/132 (53%), Gaps = 2/132 (1%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPN-GEERCIACKLCEAICPA 75
           +  F + LR+FF+   TI YP EK   +PRFRG  ALR  P  GE  C+AC LC  ICP 
Sbjct: 75  IRGFLVTLRHFFQRPVTIQYPEEKREPAPRFRGLPALRSDPETGEALCVACGLCARICPT 134

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
             + +   P   +G R    + +   +C++CGLC + CPVDAI     +E +   R+ L 
Sbjct: 135 SCLEMHVVP-SEEGDRELGEFILRAGRCMFCGLCAQVCPVDAITMSGEYEQSVLDREGLI 193

Query: 136 YDKERLLNNGDR 147
           Y K  L   G +
Sbjct: 194 YVKTELAAIGSQ 205


>gi|326799008|ref|YP_004316827.1| NAD(P)H-quinone oxidoreductase subunit I [Sphingobacterium sp. 21]
 gi|326549772|gb|ADZ78157.1| NAD(P)H-quinone oxidoreductase subunit I [Sphingobacterium sp. 21]
          Length = 169

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 51/149 (34%), Positives = 80/149 (53%), Gaps = 10/149 (6%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M  +      ++L   +    + +R+FF+ K T++YP  +   S  +RG H+L+R   G 
Sbjct: 16  MNFWER----MYLPAILKGMRVTIRHFFRKKATVSYPEVERPYSKNYRGMHSLKRDEEGR 71

Query: 61  ERCIACKLCEAICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQEACP 114
           ERC AC LC   CPA+AIT+ S  R           +    Y+I+M++CI+CGLC+EACP
Sbjct: 72  ERCTACGLCALSCPAEAITMISAERKKGEEHLYREEKYAAVYEINMLRCIFCGLCEEACP 131

Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLN 143
            +AI        A   R++  Y K++L+ 
Sbjct: 132 KEAIYLDGPHVPADYLRKDFIYGKDKLVE 160


>gi|320540447|ref|ZP_08040097.1| putative NADH:ubiquinone oxidoreductase, chain I [Serratia
           symbiotica str. Tucson]
 gi|320029378|gb|EFW11407.1| putative NADH:ubiquinone oxidoreductase, chain I [Serratia
           symbiotica str. Tucson]
          Length = 176

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 54/142 (38%), Positives = 75/142 (52%), Gaps = 8/142 (5%)

Query: 11  LFLKEFVGAF-------FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LKE V  F       ++   + F  + T  YP E     PR+RG   L R P+G ERC
Sbjct: 1   MTLKELVVGFCTQVRSIWMIGLHAFAKRETQMYPEEPVYLPPRYRGRIVLTRDPDGAERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC   CP   I+++   +   G      + I+  +CI+CGLC+EACP  AI   P+
Sbjct: 61  VACNLCAVACPVSCISLQKAEQQD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119

Query: 124 FEFATETRQELYYDKERLLNNG 145
           FE     RQ+L Y+KE LL +G
Sbjct: 120 FEMGEFKRQDLVYEKEDLLISG 141


>gi|90425539|ref|YP_533909.1| NADH dehydrogenase subunit I [Rhodopseudomonas palustris BisB18]
 gi|115502515|sp|Q20Z46|NUOI2_RHOPB RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName:
           Full=NADH dehydrogenase I subunit I 2; AltName:
           Full=NDH-1 subunit I 2
 gi|90107553|gb|ABD89590.1| NADH-quinone oxidoreductase, chain I [Rhodopseudomonas palustris
           BisB18]
          Length = 171

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 49/134 (36%), Positives = 66/134 (49%), Gaps = 1/134 (0%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           +  ++ A     R       T+ YP  K    PR RG   L R P+G+ERC+AC LC   
Sbjct: 1   MIGWLEALLRVGRKLAAKTVTVQYPEVKPQLPPRSRGRIVLTRDPDGQERCVACNLCAVA 60

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           CP   I +       DG      + I+  +CI+CG C+EACP  AI   P+FE +   R 
Sbjct: 61  CPVGCIDLSKA-VAEDGRWYPEHFRINFARCIFCGYCEEACPTAAIQLTPDFELSEWRRD 119

Query: 133 ELYYDKERLLNNGD 146
            L YDK+ LL  G+
Sbjct: 120 ALVYDKKDLLIAGE 133


>gi|193213781|ref|YP_001994980.1| NADH-quinone oxidoreductase subunit I [Chloroherpeton thalassium
           ATCC 35110]
 gi|226737388|sp|B3QSE2|NUOI_CHLT3 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|193087258|gb|ACF12533.1| NADH-quinone oxidoreductase, chain I [Chloroherpeton thalassium
           ATCC 35110]
          Length = 183

 Score =  121 bits (303), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 48/159 (30%), Positives = 71/159 (44%), Gaps = 1/159 (0%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALR-RYPNGEERCI 64
             +  L+L E +       R  F    T  YP  K      FRG   L  R     ERC+
Sbjct: 14  NFLERLYLPEVLKGLGYTFRQIFAPIFTTEYPDVKWQPPAVFRGRPVLVERDDKTGERCV 73

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           AC LC  +CP  AI+I++     +  R    ++I+M++CIYCG C+E CP +AIV    +
Sbjct: 74  ACGLCSRVCPPMAISIQAEETELEQERHPATFEINMLRCIYCGYCEEVCPEEAIVMSDEY 133

Query: 125 EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           +     R+    DK +LL    R +  +       +  R
Sbjct: 134 DITFNNRENAIMDKSKLLVPVARVQKRLDFLKEYKNKVR 172


>gi|169634174|ref|YP_001707910.1| NADH dehydrogenase subunit I [Acinetobacter baumannii SDF]
 gi|169797051|ref|YP_001714844.1| NADH dehydrogenase subunit I [Acinetobacter baumannii AYE]
 gi|184157036|ref|YP_001845375.1| NADH dehydrogenase subunit I [Acinetobacter baumannii ACICU]
 gi|239501287|ref|ZP_04660597.1| NADH dehydrogenase subunit I [Acinetobacter baumannii AB900]
 gi|260551026|ref|ZP_05825231.1| NADH-quinone oxidoreductase subunit I [Acinetobacter sp. RUH2624]
 gi|260555657|ref|ZP_05827877.1| NADH-plastoquinone oxidoreductase, I subunit [Acinetobacter
           baumannii ATCC 19606]
 gi|301347787|ref|ZP_07228528.1| NADH dehydrogenase subunit I [Acinetobacter baumannii AB056]
 gi|301510622|ref|ZP_07235859.1| NADH dehydrogenase subunit I [Acinetobacter baumannii AB058]
 gi|301595907|ref|ZP_07240915.1| NADH dehydrogenase subunit I [Acinetobacter baumannii AB059]
 gi|332852140|ref|ZP_08433967.1| NADH-quinone oxidoreductase subunit I [Acinetobacter baumannii
           6013150]
 gi|332867539|ref|ZP_08437692.1| NADH-quinone oxidoreductase subunit I [Acinetobacter baumannii
           6013113]
 gi|332872611|ref|ZP_08440579.1| NADH-quinone oxidoreductase subunit I [Acinetobacter baumannii
           6014059]
 gi|156632697|sp|A3M2Q5|NUOI_ACIBT RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|226737380|sp|B2HU48|NUOI_ACIBC RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|226737381|sp|B0VU49|NUOI_ACIBS RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|226737382|sp|B0V894|NUOI_ACIBY RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|169149978|emb|CAM87872.1| NADH dehydrogenase I chain I, 2Fe-2S ferredoxin-related
           [Acinetobacter baumannii AYE]
 gi|169152966|emb|CAP02012.1| NADH dehydrogenase I chain I, 2Fe-2S ferredoxin-related
           [Acinetobacter baumannii]
 gi|183208630|gb|ACC56028.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
           kD subunit (chain I) [Acinetobacter baumannii ACICU]
 gi|193076541|gb|ABO11199.2| NADH dehydrogenase I chain I 2Fe-2S ferredoxin-related
           [Acinetobacter baumannii ATCC 17978]
 gi|260405974|gb|EEW99461.1| NADH-quinone oxidoreductase subunit I [Acinetobacter sp. RUH2624]
 gi|260410568|gb|EEX03866.1| NADH-plastoquinone oxidoreductase, I subunit [Acinetobacter
           baumannii ATCC 19606]
 gi|332729512|gb|EGJ60851.1| NADH-quinone oxidoreductase subunit I [Acinetobacter baumannii
           6013150]
 gi|332733956|gb|EGJ65101.1| NADH-quinone oxidoreductase subunit I [Acinetobacter baumannii
           6013113]
 gi|332739140|gb|EGJ69999.1| NADH-quinone oxidoreductase subunit I [Acinetobacter baumannii
           6014059]
          Length = 180

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 52/133 (39%), Positives = 73/133 (54%), Gaps = 3/133 (2%)

Query: 15  EFVGAFFLCLRYFFKAKTTINYPFEKGS--TSPRFRGEHALRRYPNGEERCIACKLCEAI 72
             V   F+   + F+ + TI YP         PR+RG   L R P+GEERC+AC LC   
Sbjct: 10  SIVRTLFMVFTHGFRKRDTILYPEVPAEEIVPPRYRGRIILTRDPDGEERCVACNLCAVA 69

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           CP   I+++   +  DG      + I+  +CI+CG+C+EACP  AI   P+FE     RQ
Sbjct: 70  CPVGCISLQKAEK-EDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQLTPDFELGEYVRQ 128

Query: 133 ELYYDKERLLNNG 145
           +L Y+KE LL +G
Sbjct: 129 DLVYEKENLLISG 141


>gi|291285965|ref|YP_003502781.1| NADH-quinone oxidoreductase, chain I [Denitrovibrio acetiphilus DSM
           12809]
 gi|290883125|gb|ADD66825.1| NADH-quinone oxidoreductase, chain I [Denitrovibrio acetiphilus DSM
           12809]
          Length = 165

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 45/143 (31%), Positives = 72/143 (50%), Gaps = 1/143 (0%)

Query: 5   RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64
           +     +FL E +    + L + FK   T  YP+E      RFRG   ++ + +G  +C+
Sbjct: 3   KNIFETIFLTEILKGLSITLSHMFKKPVTYKYPYEATPIMDRFRGIQYIKTHEDGRTKCV 62

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
            C LC+ +CP++ I IE+     +G R   +Y++D+ +CIYCG C+E CPVDAI  G  +
Sbjct: 63  GCYLCQKVCPSECIHIETD-CGPNGERLIRKYELDLSRCIYCGYCEEVCPVDAIHMGWEW 121

Query: 125 EFATETRQELYYDKERLLNNGDR 147
                 R     + + L  N   
Sbjct: 122 NTVDSNRDNYVINMKTLSQNYKD 144


>gi|313672286|ref|YP_004050397.1| NADH-quinone oxidoreductase, chain i [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939042|gb|ADR18234.1| NADH-quinone oxidoreductase, chain I [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 145

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 50/146 (34%), Positives = 80/146 (54%), Gaps = 1/146 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
            R  +  LF  E +    + L++ FK   T+ YPFEK     RFRG H ++    G  +C
Sbjct: 1   MRNIIDTLFFTEILQGLGITLKHMFKKPVTLKYPFEKPIIFDRFRGIHYIKTDEKGNPKC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           + C LC+ +CP++ I IE+     +G R   +++I++ +CIYCG C+EACP DAI  G  
Sbjct: 61  VGCYLCQKVCPSECIHIETD-AGPNGERLIRKFEIELDRCIYCGFCEEACPKDAIHMGRR 119

Query: 124 FEFATETRQELYYDKERLLNNGDRWE 149
           ++    TR +   +   L+ N ++ E
Sbjct: 120 YDTVAPTRDKYLVNMGYLVKNYNKGE 145


>gi|307822808|ref|ZP_07653039.1| NADH-quinone oxidoreductase, chain I [Methylobacter tundripaludum
           SV96]
 gi|307736412|gb|EFO07258.1| NADH-quinone oxidoreductase, chain I [Methylobacter tundripaludum
           SV96]
          Length = 171

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 48/129 (37%), Positives = 72/129 (55%), Gaps = 1/129 (0%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           + + +  L++ F    T+ YP +K +  PR+RG   L R P+GEERC+AC LC   CP  
Sbjct: 5   LRSLWEVLKHTFVKPDTVEYPEQKPALFPRYRGRIVLTRDPDGEERCVACNLCAVACPVD 64

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
            I ++      +G      + I+  +CI CG C+EACP +AI   P+FE     RQ + Y
Sbjct: 65  CIVLQKAED-ENGRWYPEFFRINFSRCIMCGFCEEACPTNAIQLTPDFEMCEYDRQNMVY 123

Query: 137 DKERLLNNG 145
           +K+ LL +G
Sbjct: 124 EKQHLLIDG 132


>gi|85059572|ref|YP_455274.1| NADH dehydrogenase subunit I [Sodalis glossinidius str.
           'morsitans']
 gi|110287775|sp|Q2NSK6|NUOI_SODGM RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|84780092|dbj|BAE74869.1| NADH dehydrogenase I subunit I [Sodalis glossinidius str.
           'morsitans']
          Length = 180

 Score =  121 bits (303), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 54/142 (38%), Positives = 73/142 (51%), Gaps = 8/142 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LKE        LR         F  + T  YP    +  PRFRG   L R P+G+ERC
Sbjct: 1   MTLKELAIGCGTTLRSIWMIGMQAFNKRETRMYPDVPVNPPPRFRGRIVLTRDPDGDERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC   CP   I+++      DG      + I+  +CI+CGLC+EACP  AI   P+
Sbjct: 61  VACNLCAVACPVDCISLQKAE-TKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119

Query: 124 FEFATETRQELYYDKERLLNNG 145
           FE     RQ+L Y+K+ LL +G
Sbjct: 120 FEMGEFKRQDLVYEKDDLLISG 141


>gi|332830196|gb|EGK02824.1| NADH-quinone oxidoreductase subunit I [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 178

 Score =  120 bits (302), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 50/145 (34%), Positives = 80/145 (55%), Gaps = 8/145 (5%)

Query: 7   NVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIAC 66
            +  ++L   V   ++ +++FFK K TI YP ++   SP +RG+H L R   G ERC AC
Sbjct: 23  FIESIYLPAIVQGMWITIKHFFKKKNTIQYPEQQREFSPVYRGQHVLMRDDQGRERCTAC 82

Query: 67  KLCEAICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            LC   CPA+AIT+ +  R           +    Y+I+M++CI+CGLC++ACP +AI  
Sbjct: 83  GLCALACPAEAITMVAAERKKGEEHLYREEKYAATYEINMLRCIFCGLCEDACPKEAIFL 142

Query: 121 GPNFEFATET--RQELYYDKERLLN 143
             +         R++  Y K++L+ 
Sbjct: 143 TKSKLLVKPKLEREDFIYGKDKLVI 167


>gi|293609132|ref|ZP_06691435.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829705|gb|EFF88067.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 180

 Score =  120 bits (302), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 51/135 (37%), Positives = 70/135 (51%), Gaps = 3/135 (2%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGS--TSPRFRGEHALRRYPNGEERCIACKLCE 70
               V    +   +  + + TI YP         PRFRG   L R P+GEERC+AC LC 
Sbjct: 8   FGSIVRTLLMVFSHATRKRDTILYPEVPAEQIVPPRFRGRIVLTRDPDGEERCVACNLCA 67

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
             CP   I+++      DG      + I+  +CI+CG+C+EACP  AI   P+FE     
Sbjct: 68  VACPVGCISLQKAE-TEDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQLTPDFELGEYV 126

Query: 131 RQELYYDKERLLNNG 145
           RQ+L Y+KE LL +G
Sbjct: 127 RQDLVYEKENLLISG 141


>gi|222053578|ref|YP_002535940.1| NADH-quinone oxidoreductase, chain I [Geobacter sp. FRC-32]
 gi|221562867|gb|ACM18839.1| NADH-quinone oxidoreductase, chain I [Geobacter sp. FRC-32]
          Length = 132

 Score =  120 bits (302), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 51/128 (39%), Positives = 73/128 (57%), Gaps = 2/128 (1%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +    + L + FK   T+ YP E+   +P FRG HAL      + +C+AC LC  +CPA
Sbjct: 5   LLKGLGITLSHLFKKPVTLQYPDERPEVAPTFRGLHALNISH-DKAKCVACYLCPTVCPA 63

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
           + I +E+G    +  +    Y+IDM++CI+CG C EACPVDA+     FE A  TR +  
Sbjct: 64  KCIKVEAGED-ENHNKYAAEYEIDMLRCIFCGFCVEACPVDAVRMTEAFELANYTRADFV 122

Query: 136 YDKERLLN 143
           + KERLL 
Sbjct: 123 FSKERLLE 130


>gi|299771412|ref|YP_003733438.1| NADH dehydrogenase subunit I [Acinetobacter sp. DR1]
 gi|298701500|gb|ADI92065.1| NADH dehydrogenase subunit I [Acinetobacter sp. DR1]
          Length = 180

 Score =  120 bits (302), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 52/135 (38%), Positives = 72/135 (53%), Gaps = 3/135 (2%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGS--TSPRFRGEHALRRYPNGEERCIACKLCE 70
               V + F+   +  + + TI YP         PRFRG   L R P+GEERC+AC LC 
Sbjct: 8   FGSIVRSLFMVFTHVTRKRDTILYPEVPAEQIVPPRFRGRIVLTRDPDGEERCVACNLCA 67

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
             CP   I+++      DG      + I+  +CI+CG+C+EACP  AI   P+FE     
Sbjct: 68  VACPVGCISLQKAE-TEDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQLTPDFELGEYV 126

Query: 131 RQELYYDKERLLNNG 145
           RQ+L Y+KE LL +G
Sbjct: 127 RQDLVYEKENLLISG 141


>gi|255318323|ref|ZP_05359558.1| 4Fe-4S binding domain protein [Acinetobacter radioresistens SK82]
 gi|262379067|ref|ZP_06072223.1| NADH-plastoquinone oxidoreductase, I subunit [Acinetobacter
           radioresistens SH164]
 gi|255304635|gb|EET83817.1| 4Fe-4S binding domain protein [Acinetobacter radioresistens SK82]
 gi|262298524|gb|EEY86437.1| NADH-plastoquinone oxidoreductase, I subunit [Acinetobacter
           radioresistens SH164]
          Length = 180

 Score =  120 bits (302), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 50/133 (37%), Positives = 72/133 (54%), Gaps = 3/133 (2%)

Query: 15  EFVGAFFLCLRYFFKAKTTINYPFEKGS--TSPRFRGEHALRRYPNGEERCIACKLCEAI 72
             V   ++   +  + + TI YP         PR+RG   L R P+GEERC+AC LC   
Sbjct: 10  SIVRTLWMVFTHVGRKRDTILYPEVPAEQIVPPRYRGRIILTRDPDGEERCVACNLCAVA 69

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           CP   I+++   +  DG      + I+  +CI+CG+C+EACP  AI   P+FE     RQ
Sbjct: 70  CPVGCISLQKAEK-EDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQLTPDFELGEYVRQ 128

Query: 133 ELYYDKERLLNNG 145
           +L Y+KE LL +G
Sbjct: 129 DLVYEKEHLLISG 141


>gi|322421842|ref|YP_004201065.1| NADH-quinone oxidoreductase subunit I [Geobacter sp. M18]
 gi|320128229|gb|ADW15789.1| NADH-quinone oxidoreductase, chain I [Geobacter sp. M18]
          Length = 132

 Score =  120 bits (301), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 52/128 (40%), Positives = 74/128 (57%), Gaps = 2/128 (1%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +    + + + FK   T+ YP E+    P FRG HAL      + +C+AC LC  +CPA
Sbjct: 5   LIKGLQITISHMFKKPVTLQYPTERPEIKPGFRGLHALNVSH-DKAKCVACYLCPTVCPA 63

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
           + IT+E+G    +  +   +Y+IDM++CI+CG C EACPVDAI     FE A  +R +  
Sbjct: 64  KCITVEAGED-ENHDKYAAKYEIDMLRCIFCGYCVEACPVDAIRMTEEFELANYSRADFT 122

Query: 136 YDKERLLN 143
           Y KERLL 
Sbjct: 123 YTKERLLE 130


>gi|110637779|ref|YP_677986.1| NADH dehydrogenase I subunit I [Cytophaga hutchinsonii ATCC 33406]
 gi|123163631|sp|Q11VC0|NUOI_CYTH3 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|110280460|gb|ABG58646.1| NADH dehydrogenase subunit I [Cytophaga hutchinsonii ATCC 33406]
          Length = 175

 Score =  120 bits (301), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 49/143 (34%), Positives = 75/143 (52%), Gaps = 6/143 (4%)

Query: 7   NVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIAC 66
            +  +++   V    + L + FK K TI YP  +   +  +RG+H L+R   G E C AC
Sbjct: 17  FMERIYIPSIVSGMMITLSHLFKKKATIQYPEVQREFAFVYRGKHILKRDEQGRENCTAC 76

Query: 67  KLCEAICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            LC   CPA+AITI +  R           +    Y+I+M++CI+CGLC+EACP DA+  
Sbjct: 77  GLCAVSCPAEAITIIADERKKGEEHLYKEEKYASLYEINMLRCIFCGLCEEACPKDAVYL 136

Query: 121 GPNFEFATETRQELYYDKERLLN 143
                 A   R++  Y K++L+ 
Sbjct: 137 TEELVPAQYNRKDFIYGKDKLVQ 159


>gi|149280562|ref|ZP_01886678.1| NADH dehydrogenase I chain I [Pedobacter sp. BAL39]
 gi|149228677|gb|EDM34080.1| NADH dehydrogenase I chain I [Pedobacter sp. BAL39]
          Length = 167

 Score =  120 bits (301), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 49/139 (35%), Positives = 74/139 (53%), Gaps = 6/139 (4%)

Query: 11  LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70
           ++L        +   + FK + TI YP  +   S  FRG H+L+R  +G ERC AC LC 
Sbjct: 22  MYLPAIAKGLTITFSHLFKKEATIRYPEVQREFSTNFRGMHSLKRDEDGRERCTACGLCA 81

Query: 71  AICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
             CPA+AIT+ +  R           +    Y+I+M++CI+CGLC+EACP +AI      
Sbjct: 82  LSCPAEAITMIAAERKPEEKQLYREEKYASVYEINMLRCIFCGLCEEACPKEAIYLDGPI 141

Query: 125 EFATETRQELYYDKERLLN 143
             A   R++  Y K++L+ 
Sbjct: 142 VPADYLRKDFIYGKDKLVE 160


>gi|328953785|ref|YP_004371119.1| NAD(P)H-quinone oxidoreductase subunit I [Desulfobacca acetoxidans
           DSM 11109]
 gi|328454109|gb|AEB09938.1| NAD(P)H-quinone oxidoreductase subunit I [Desulfobacca acetoxidans
           DSM 11109]
          Length = 134

 Score =  120 bits (301), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 46/126 (36%), Positives = 66/126 (52%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +       +       TI YP E+   S RFRG   L+ + NG+ +C+AC LC+ +CP+
Sbjct: 5   LLKGLGTTFKALISKPITIQYPEERRPVSDRFRGRPELQLHENGKVKCVACTLCKTVCPS 64

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
           QAI          G +  +R++ID+ +CI+CG CQEACP  AI     +E A   +  L 
Sbjct: 65  QAILAIEAAEGTYGEKYPIRFEIDLTRCIFCGFCQEACPKAAIALNKEYELAQYDKSALL 124

Query: 136 YDKERL 141
           YD E L
Sbjct: 125 YDLEML 130


>gi|291280349|ref|YP_003497184.1| NADH-quinone oxidoreductase subunit I [Deferribacter desulfuricans
           SSM1]
 gi|290755051|dbj|BAI81428.1| NADH-quinone oxidoreductase, I subunit [Deferribacter desulfuricans
           SSM1]
          Length = 153

 Score =  120 bits (301), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 48/148 (32%), Positives = 81/148 (54%), Gaps = 1/148 (0%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   +    ++F  E +    + L++ FK   T  YP+E      RFRG H ++   +G 
Sbjct: 1   MAKNKNIFDYVFFTEILQGMGVTLKHMFKKPVTYKYPYEATPIFERFRGVHYMKTDEDGN 60

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            +C+ C LCE +CP++ I IE+     +G R   +Y+I++ +CIYCG C+EACPVDAI  
Sbjct: 61  PKCVGCYLCERVCPSECIHIETD-AGPNGERLIRKYEIELDRCIYCGFCEEACPVDAIHM 119

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRW 148
           G +++    TR+    + + L++    +
Sbjct: 120 GRSYDVVRPTREGYRVNMKFLVDKYKEY 147


>gi|284042623|ref|YP_003392963.1| NADH-quinone oxidoreductase, chain I [Conexibacter woesei DSM
           14684]
 gi|283946844|gb|ADB49588.1| NADH-quinone oxidoreductase, chain I [Conexibacter woesei DSM
           14684]
          Length = 177

 Score =  120 bits (300), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 47/137 (34%), Positives = 65/137 (47%), Gaps = 6/137 (4%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE-ERCIACKLCEA 71
             E +           +      YP EK    PRFRG H L R+ + + E+C+ C LC A
Sbjct: 28  FGETLRGLKTTFGRMLEKPVVYEYPEEKVPVYPRFRGRHKLHRFEDSKLEKCVGCSLCAA 87

Query: 72  ICPAQAIT-----IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
            CPA  I           R   G R    Y+I++ +CI+CG C+ ACP DAI  G ++E 
Sbjct: 88  ACPADCIRVVAAENTPEHRVSAGERYAAVYEINLSRCIFCGYCEVACPFDAITMGHDYEM 147

Query: 127 ATETRQELYYDKERLLN 143
           +   R +L + KE LL 
Sbjct: 148 SDYNRDDLIFTKEMLLA 164


>gi|256078649|ref|XP_002575607.1| NADH-ubiquinone oxidoreductase [Schistosoma mansoni]
 gi|238660849|emb|CAZ31840.1| NADH-ubiquinone oxidoreductase 1, chain, putative [Schistosoma
           mansoni]
          Length = 169

 Score =  120 bits (300), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 82/120 (68%), Positives = 89/120 (74%), Gaps = 1/120 (0%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           F     +L L + +    L     FK   T+NYPFEKG  SPRFRGEHALRRYP+GEERC
Sbjct: 48  FENVTRWLILADILRGLRLTFGMIFKEPATLNYPFEKGPLSPRFRGEHALRRYPSGEERC 107

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAITIE+ PR   G+RRT RYDIDM KCIYCG CQEACPVDAIVE  N
Sbjct: 108 IACKLCEAICPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEVTN 166


>gi|312131902|ref|YP_003999242.1| NADH dehydrogenase subunit i [Leadbetterella byssophila DSM 17132]
 gi|311908448|gb|ADQ18889.1| NADH dehydrogenase subunit I [Leadbetterella byssophila DSM 17132]
          Length = 183

 Score =  120 bits (300), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 54/154 (35%), Positives = 81/154 (52%), Gaps = 8/154 (5%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
             V   +L        + L++FF  K TI YP +K    P FRG H L+R   G ERC A
Sbjct: 16  NVVEKTYLPGVFKGMAITLKHFFSPKPTIRYPEQKRYLGPVFRGHHILKRDEQGRERCTA 75

Query: 66  CKLCEAICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           C LC   CPA+AI++ +  R           +    Y+I+M++CI+CGLC+EACP  AI 
Sbjct: 76  CGLCAVACPAEAISMVAAERVKGEEHLYREEKYAAAYEINMLRCIFCGLCEEACPKQAIY 135

Query: 120 EGPN-FEFATETRQELYYDKERLLNN-GDRWESE 151
              + F      R+++ Y K++L+ +  +R+  E
Sbjct: 136 LRHDKFVPVFTGREDVIYGKDQLVEDMNERYNRE 169


>gi|332754929|gb|EGJ85294.1| NADH-quinone oxidoreductase, chain I family protein [Shigella
           flexneri 4343-70]
          Length = 162

 Score =  120 bits (300), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 51/120 (42%), Positives = 68/120 (56%), Gaps = 1/120 (0%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
           + F  + T  YP E     PR+RG   L R P+GEERC+AC LC   CP   I+++    
Sbjct: 5   HAFAKRETRMYPEEPVYLPPRYRGRIVLTRDPDGEERCVACNLCAVACPVGCISLQKAE- 63

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNG 145
             DG      + I+  +CI+CGLC+EACP  AI   P+FE     RQ+L Y+KE LL +G
Sbjct: 64  TKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDFEMGEYKRQDLVYEKEDLLISG 123


>gi|325954442|ref|YP_004238102.1| NAD(P)H-quinone oxidoreductase subunit I [Weeksella virosa DSM
           16922]
 gi|323437060|gb|ADX67524.1| NAD(P)H-quinone oxidoreductase subunit I [Weeksella virosa DSM
           16922]
          Length = 166

 Score =  120 bits (300), Expect = 8e-26,   Method: Composition-based stats.
 Identities = 54/149 (36%), Positives = 76/149 (51%), Gaps = 10/149 (6%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M  +      ++L        + +++FF  K TINYP EK   SP FRG H L R   G 
Sbjct: 16  MNFWEK----IYLVAIFKGLMITIKHFFMKKQTINYPEEKRPFSPVFRGLHILNRDEEGR 71

Query: 61  ERCIACKLCEAICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQEACP 114
           E C AC LC   CPA+AIT+E+  R           +   +Y+I+M++CI+CG C+EACP
Sbjct: 72  ENCTACGLCALACPAEAITMEAAERLPGEEHLYREEKYAAKYEINMLRCIFCGFCEEACP 131

Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLN 143
            DA+         +  R+   Y K+ LL 
Sbjct: 132 KDAVYLSQTVPPPSFDRKNFVYGKQDLLI 160


>gi|255019946|ref|ZP_05292020.1| NADH-ubiquinone oxidoreductase chain I [Acidithiobacillus caldus
           ATCC 51756]
 gi|254970605|gb|EET28093.1| NADH-ubiquinone oxidoreductase chain I [Acidithiobacillus caldus
           ATCC 51756]
          Length = 173

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 54/133 (40%), Positives = 76/133 (57%), Gaps = 1/133 (0%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           L+ ++  F+  LR   +   T++YP E+    PR+RG   L R P+G+ERC+AC+LC A+
Sbjct: 5   LRSWIVGFWTTLRQLGRWPVTLSYPEEQPQLPPRWRGRPVLTRDPDGDERCVACELCSAV 64

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           CP Q I +E   R   G R    + I+  +CIYCGLC+EACP  AI     F F  + R 
Sbjct: 65  CPTQCIELEGDDRPD-GRRYARTFRINFSRCIYCGLCEEACPTLAIQLLEEFAFGKDRRA 123

Query: 133 ELYYDKERLLNNG 145
           +  Y K  LL +G
Sbjct: 124 DFVYHKAALLIDG 136


>gi|309785015|ref|ZP_07679648.1| NADH-quinone oxidoreductase, chain I family protein [Shigella
           dysenteriae 1617]
 gi|308927385|gb|EFP72859.1| NADH-quinone oxidoreductase, chain I family protein [Shigella
           dysenteriae 1617]
          Length = 162

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 51/120 (42%), Positives = 68/120 (56%), Gaps = 1/120 (0%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
           + F  + T  YP E     PR+RG   L R P+GEERC+AC LC   CP   I+++    
Sbjct: 5   HAFAKRETRMYPEEPVYLPPRYRGRIVLTRDPDGEERCVACNLCAVACPVGCISLQKTE- 63

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNG 145
             DG      + I+  +CI+CGLC+EACP  AI   P+FE     RQ+L Y+KE LL +G
Sbjct: 64  TKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDFEMGEYKRQDLVYEKEDLLISG 123


>gi|197120279|ref|YP_002140706.1| NADH dehydrogenase I subunit I [Geobacter bemidjiensis Bem]
 gi|253702587|ref|YP_003023776.1| NADH-quinone oxidoreductase, chain I [Geobacter sp. M21]
 gi|197089639|gb|ACH40910.1| NADH dehydrogenase I, I subunit [Geobacter bemidjiensis Bem]
 gi|251777437|gb|ACT20018.1| NADH-quinone oxidoreductase, chain I [Geobacter sp. M21]
          Length = 132

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 51/128 (39%), Positives = 74/128 (57%), Gaps = 2/128 (1%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +    + L + FK   T+ YP E+   +  FRG HAL      + +C+AC LC  +CPA
Sbjct: 5   LIKGLQITLSHMFKKPVTLQYPTERPQIANTFRGLHALNVSH-DKAKCVACYLCPTVCPA 63

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
           + IT+E+G   +   +   +Y+IDM++CI+CG C EACPVDAI     FE A  +R +  
Sbjct: 64  KCITVEAGEDQNH-DKYAAKYEIDMLRCIFCGYCVEACPVDAIRMTEQFELANYSRADFT 122

Query: 136 YDKERLLN 143
           + KERLL 
Sbjct: 123 FTKERLLE 130


>gi|284039950|ref|YP_003389880.1| NADH-quinone oxidoreductase, chain I [Spirosoma linguale DSM 74]
 gi|283819243|gb|ADB41081.1| NADH-quinone oxidoreductase, chain I [Spirosoma linguale DSM 74]
          Length = 188

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 53/146 (36%), Positives = 80/146 (54%), Gaps = 8/146 (5%)

Query: 11  LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70
           ++L   VG   + + +FF+ K TI YP  K    P +RG H L+R   G ERC AC LC 
Sbjct: 21  MYLPAIVGGLAITISHFFRKKPTIQYPEVKKYLGPIYRGHHILKRDEQGRERCTACGLCA 80

Query: 71  AICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN- 123
             CPA+AI++ +  R           +    Y+I+M++CI+CGLC+EACP  A+    + 
Sbjct: 81  VACPAEAISMVAAERKKGEENLYREEKYAAVYEINMLRCIFCGLCEEACPKQAVYLRHDR 140

Query: 124 FEFATETRQELYYDKERLLNN-GDRW 148
                + R ++ Y K+RL+ N  DR+
Sbjct: 141 MVPVFQERDDVIYGKDRLVENMNDRY 166


>gi|78224537|ref|YP_386284.1| NADH-quinone oxidoreductase, chain I [Geobacter metallireducens
           GS-15]
 gi|110287757|sp|Q39QB5|NUOI2_GEOMG RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName:
           Full=NADH dehydrogenase I subunit I 2; AltName:
           Full=NDH-1 subunit I 2
 gi|78195792|gb|ABB33559.1| NADH dehydrogenase subunit I [Geobacter metallireducens GS-15]
          Length = 131

 Score =  119 bits (298), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 51/128 (39%), Positives = 76/128 (59%), Gaps = 2/128 (1%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +    + L++ F    T+ YP E+ + SP FRG HAL+   + + +C+ C LC  +CPA
Sbjct: 5   LINGLKITLKHMFMKPVTLQYPDERPTPSPNFRGLHALKVSHS-KAKCVCCYLCPTVCPA 63

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
           + IT+E+G       +   RY+IDM++CI+CG C EACPVDA+     FE A   R++  
Sbjct: 64  KCITVEAGEDQEH-NKYAERYEIDMLRCIFCGYCVEACPVDALKMTGEFELANYKREDFV 122

Query: 136 YDKERLLN 143
           + KERLL 
Sbjct: 123 FVKERLLE 130


>gi|39995455|ref|NP_951406.1| NADH dehydrogenase I subunit I [Geobacter sulfurreducens PCA]
 gi|81703471|sp|Q74GA0|NUOI1_GEOSL RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName:
           Full=NADH dehydrogenase I subunit I 1; AltName:
           Full=NDH-1 subunit I 1
 gi|39982218|gb|AAR33679.1| NADH dehydrogenase I, I subunit [Geobacter sulfurreducens PCA]
 gi|298504454|gb|ADI83177.1| NADH dehydrogenase I, I subunit [Geobacter sulfurreducens KN400]
          Length = 132

 Score =  119 bits (298), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 52/128 (40%), Positives = 77/128 (60%), Gaps = 2/128 (1%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +    + L++ F    T+ YP E+ + SP FRG HAL+   + + +C+AC LC  +CPA
Sbjct: 5   LINGLKITLKHMFMKPVTLQYPDERPTPSPNFRGLHALKVSHD-KAKCVACYLCPTVCPA 63

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
           + IT+E+G       +   RY+IDM++CI+CG C EACPVDA+     FE A   R++  
Sbjct: 64  KCITVEAGEDATH-DKYAERYEIDMLRCIFCGYCVEACPVDALKMTGQFELANYKREDFI 122

Query: 136 YDKERLLN 143
           + KERLL 
Sbjct: 123 FVKERLLE 130


>gi|294506393|ref|YP_003570451.1| NADH dehydrogenase I, I subunit [Salinibacter ruber M8]
 gi|294342721|emb|CBH23499.1| NADH dehydrogenase I, I subunit [Salinibacter ruber M8]
          Length = 239

 Score =  119 bits (298), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 2/144 (1%)

Query: 10  FLFLKEFVGAFFLCL-RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKL 68
            L+L E          R   +   T  YP E+      +RG   L    +   RC++C L
Sbjct: 21  SLYLPELFKGLGYSFDRMANEPTYTFEYPEEQWYPPDSYRGRPVLVE-EDDRPRCVSCNL 79

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
           C   CP  AI+++S    +   R    ++I+M++CIYCG C+E CP +AIV     +   
Sbjct: 80  CARACPPLAISMQSKEVNNVKEREPEWFEINMLRCIYCGFCEEVCPEEAIVMSKEHDLTF 139

Query: 129 ETRQELYYDKERLLNNGDRWESEI 152
           ++R E  +D + LL   ++ +  +
Sbjct: 140 QSRDEAVFDLDDLLRPSEQMQDRL 163


>gi|157273354|gb|ABV27253.1| NADH-quinone oxidoreductase subunit 9 [Candidatus
           Chloracidobacterium thermophilum]
          Length = 168

 Score =  119 bits (298), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 65/152 (42%), Positives = 77/152 (50%), Gaps = 8/152 (5%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 + L Y  K K T  YP       PRFRGEH L R  NG+ERC+AC LC A CPA
Sbjct: 18  IAQGMAVTLSYIPKQKLTRQYPDVPVELYPRFRGEHYLARDENGKERCVACFLCAAACPA 77

Query: 76  QAITIES-------GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
            AI IE+         R     R    Y+ID  +CI CG C EACP DAI  G NFE A 
Sbjct: 78  DAIYIEADEDLRPYEERPGVEPRYARVYNIDYGRCILCGYCVEACPKDAIKHGHNFEMAV 137

Query: 129 ETRQELYYDKERLLNNGDRWESEIVRNIVTDS 160
               +L  DK+ LL+N +R E      I +D+
Sbjct: 138 TNFADLVKDKQYLLSNLER-EKTRNLTIRSDA 168


>gi|239905974|ref|YP_002952713.1| NADH-quinone oxidoreductase chain I [Desulfovibrio magneticus RS-1]
 gi|239795838|dbj|BAH74827.1| NADH-quinone oxidoreductase chain I [Desulfovibrio magneticus RS-1]
          Length = 185

 Score =  119 bits (298), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 48/120 (40%), Positives = 65/120 (54%), Gaps = 1/120 (0%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            L + F+   T  YP  K     R RG   L R P+G ERC+AC LC   CP   I+++S
Sbjct: 26  TLTHLFRKPVTEQYPEYKRPMPARTRGRIILTRSPDGNERCVACYLCSGACPVNCISMQS 85

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLL 142
                +G RR   + I+  +CIYCGLC+EACP  A+   P F F  +   +  Y+KE+LL
Sbjct: 86  EE-GENGRRRAAWFRINFARCIYCGLCEEACPTLALQLTPEFAFCKDDIADFVYEKEQLL 144


>gi|170727211|ref|YP_001761237.1| NADH-quinone oxidoreductase subunit I [Shewanella woodyi ATCC
           51908]
 gi|226737416|sp|B1KJV5|NUOI_SHEWM RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|169812558|gb|ACA87142.1| NADH-quinone oxidoreductase, chain I [Shewanella woodyi ATCC 51908]
          Length = 171

 Score =  119 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/129 (39%), Positives = 70/129 (54%), Gaps = 1/129 (0%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           +      L++ F    T+ YP +K   SPR+RG   L R P+GEERC+AC LC   CP  
Sbjct: 5   IRTLITILKHTFTRADTVEYPEQKPYLSPRYRGRIVLTRDPDGEERCVACNLCSVACPVD 64

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
            I++    +  DG      + I+  +CI CG C+EACP  AI   P+ E A   RQ L +
Sbjct: 65  CISVVKTEK-EDGRWEAESFTINFSRCIMCGFCEEACPTHAIQLTPDVEMAEYDRQNLVF 123

Query: 137 DKERLLNNG 145
           +KE LL +G
Sbjct: 124 EKEHLLISG 132


>gi|330889653|gb|EGH22314.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. mori str.
           301020]
          Length = 153

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 51/113 (45%), Positives = 68/113 (60%), Gaps = 1/113 (0%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
           T+ YP E+    PR+RG   L R P+GEERC+AC LC   CP   I+++      DG   
Sbjct: 3   TLQYPEEQVYLPPRYRGRIVLTRDPDGEERCVACNLCAVACPVGCISLQKAE-TEDGRWY 61

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNG 145
              + I+  +CI+CGLC+EACP  AI   P+FE A   RQ+L Y+KE LL +G
Sbjct: 62  PDFFRINFSRCIFCGLCEEACPTTAIQLTPDFEMADFKRQDLVYEKEDLLISG 114


>gi|313206207|ref|YP_004045384.1| NADH dehydrogenase subunit i [Riemerella anatipestifer DSM 15868]
 gi|312445523|gb|ADQ81878.1| NADH dehydrogenase subunit I [Riemerella anatipestifer DSM 15868]
 gi|325336346|gb|ADZ12620.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
           kD subunit (chain I) [Riemerella anatipestifer RA-GD]
          Length = 175

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 50/139 (35%), Positives = 73/139 (52%), Gaps = 6/139 (4%)

Query: 12  FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71
           +L   V    + L++FFK  +TI YP ++   +  +RG H L+R   G ERC AC LC  
Sbjct: 22  YLPAIVKGMSITLKHFFKKDSTIQYPEQEKPRAKVWRGRHVLKRDDEGRERCTACGLCAV 81

Query: 72  ICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
            CPA+AIT+ S  R           +    Y+I+M++CI+CGLC+EACP  AI       
Sbjct: 82  ACPAEAITMTSAERTKEEKHLYREEKYASTYEINMLRCIFCGLCEEACPKSAIYLTDRLV 141

Query: 126 FATETRQELYYDKERLLNN 144
                R    Y K++L+ +
Sbjct: 142 DVESNRGSFVYGKDKLVED 160


>gi|121281900|gb|ABM53531.1| putative NADH-ubiquinone oxidoreductase [uncultured bacterium
           CBNPD1 BAC clone 543]
          Length = 185

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 54/157 (34%), Positives = 76/157 (48%), Gaps = 20/157 (12%)

Query: 10  FLFLKEFVGAFFLCLRYFF----------KAKTTINYPFEKGS---------TSPRFRGE 50
            LF+   +      +R+F           K    + YP +K             P FRG 
Sbjct: 21  SLFVPSIIKGLGTTMRHFVENFGRNGSNAKNIWVVQYPEQKRDDRPVEQGGQFRPTFRGV 80

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRC-HDGTRRTVRYDIDMIKCIYCGLC 109
           H L +  +G  RC+AC +C   CPA  I I +      D  +   ++DID ++CIYCG+C
Sbjct: 81  HRLNKDEDGRVRCVACFMCATACPANCIHIVAEESPWEDREKYPKQFDIDELRCIYCGMC 140

Query: 110 QEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGD 146
           +EACPVDAI   P++E    TR EL +DK +LL   D
Sbjct: 141 EEACPVDAIELTPHYEVTGLTRAELIFDKSKLLEIYD 177


>gi|189426179|ref|YP_001953356.1| NADH-quinone oxidoreductase, chain I [Geobacter lovleyi SZ]
 gi|189422438|gb|ACD96836.1| NADH-quinone oxidoreductase, chain I [Geobacter lovleyi SZ]
          Length = 135

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/131 (39%), Positives = 77/131 (58%), Gaps = 2/131 (1%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
               +    + L + FK   T+ YP E+   + RFRG HAL+   N + +C+AC LC  +
Sbjct: 5   FTPIMQGMKITLGHVFKKPVTLMYPDERPKVAERFRGLHALKVSHN-KAKCVACYLCPTV 63

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           CPA+ IT+E+G   +   +   +Y+IDM++CI+CG C EACPVDA+     FE A   R+
Sbjct: 64  CPAKCITVEAGEDANH-DKFAAKYEIDMLRCIFCGYCVEACPVDALKMTGEFELANYRRE 122

Query: 133 ELYYDKERLLN 143
           +  + KERLL 
Sbjct: 123 DFVFTKERLLE 133


>gi|89073310|ref|ZP_01159840.1| NADH dehydrogenase I, I subunit [Photobacterium sp. SKA34]
 gi|89051020|gb|EAR56484.1| NADH dehydrogenase I, I subunit [Photobacterium sp. SKA34]
          Length = 177

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 54/133 (40%), Positives = 81/133 (60%), Gaps = 1/133 (0%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           L+E  GAF   +++ +  + T+ YP  K     R+RG   L R P+G+ERC+AC LC ++
Sbjct: 7   LQEVTGAFAATIKHVWAPRDTVCYPEVKPDLPERWRGRIVLTRDPDGDERCVACYLCSSV 66

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           CPA AITI+   R  D  R    +++D  +CI+CG+C+EACP  +I    +FE    +R 
Sbjct: 67  CPANAITIQGAER-EDERRYAKTFELDFSRCIFCGMCEEACPTLSIQCTTDFEMGKYSRD 125

Query: 133 ELYYDKERLLNNG 145
           +L Y+KE LL +G
Sbjct: 126 KLLYEKEDLLIDG 138


>gi|271962239|ref|YP_003336435.1| formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
           kD subunit (chain I)-like protein [Streptosporangium
           roseum DSM 43021]
 gi|270505414|gb|ACZ83692.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
           kD subunit (chain I)-like protein [Streptosporangium
           roseum DSM 43021]
          Length = 417

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/134 (32%), Positives = 57/134 (42%), Gaps = 13/134 (9%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            V    + LR+      T  YP  +    PR RG  AL      EE C  C LC   CP 
Sbjct: 9   LVKGLSVTLRHMLSRSVTQQYPEVRPDLPPRSRGVIALV-----EENCTVCMLCARECPD 63

Query: 76  QAITIESGPRC--------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
             I I+S                    R+ ID   C+YCG+C E CP DA+   P FE+A
Sbjct: 64  WCIYIDSHKETLPAPEGGRPRARNMLDRFAIDFSLCMYCGICIEVCPFDALFWSPEFEYA 123

Query: 128 TETRQELYYDKERL 141
               + L ++K++L
Sbjct: 124 EGDIRNLVHEKDKL 137


>gi|308185016|ref|YP_003929149.1| NADH dehydrogenase subunit I [Helicobacter pylori SJM180]
 gi|308060936|gb|ADO02832.1| NADH dehydrogenase subunit I [Helicobacter pylori SJM180]
          Length = 220

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62
           F+  +      +      L ++ FF    TI+YP E+   SPR+R  H L R   +G ER
Sbjct: 22  FKDTIKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHHLQRLLDSGSER 81

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C LCE IC +  I I +     D  ++   Y I++ +CIYCGLC E CP  AIV G 
Sbjct: 82  CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140

Query: 123 NFEFATETRQE 133
            FE A+  R +
Sbjct: 141 RFENASTQRSQ 151


>gi|163781781|ref|ZP_02176781.1| NADH dehydrogenase I chain I [Hydrogenivirga sp. 128-5-R1-1]
 gi|159883001|gb|EDP76505.1| NADH dehydrogenase I chain I [Hydrogenivirga sp. 128-5-R1-1]
          Length = 201

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 17/167 (10%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEH---------- 51
           + +      +F  +F+    + LR  F+   T  YP EK +   RFRG H          
Sbjct: 9   KDYLNIAEAIFFIDFLKGLSVTLRNLFRKPITTEYPKEKLTPPKRFRGAHGHFVWDGSEP 68

Query: 52  -------ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
                      Y  G+ RC+AC +C+  CP   +      +  DG+++  R+D++++ C+
Sbjct: 69  DSLKAIEKFMSYERGKSRCVACYMCQTACPMPTLFRIEAVQLPDGSKKVTRFDMNLLNCL 128

Query: 105 YCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
           +CGLC +ACPV  +     +E A  +R++     +RL  +G  +   
Sbjct: 129 FCGLCVDACPVGCLTMTDLYELAGYSRRDEVLRMDRLEEHGIDFTKR 175


>gi|317011468|gb|ADU85215.1| NADH dehydrogenase subunit I [Helicobacter pylori SouthAfrica7]
          Length = 220

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62
           F+  +      +      L ++ FF    TI+YP E+   SPR+R  H L R   +G ER
Sbjct: 22  FKDTIKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHHLQRLLDSGSER 81

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C LCE IC +  I I +     D  ++   Y I++ +CIYCGLC E CP  AIV G 
Sbjct: 82  CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140

Query: 123 NFEFATETRQE 133
            FE A+  R +
Sbjct: 141 RFENASTQRSQ 151


>gi|307637939|gb|ADN80389.1| NADH-ubiquinone oxidoreductase chain I [Helicobacter pylori 908]
 gi|325996543|gb|ADZ51948.1| NADH-ubiquinone oxidoreductase chain I [Helicobacter pylori 2018]
 gi|325998132|gb|ADZ50340.1| NADH-ubiquinone oxidoreductase chain I [Helicobacter pylori 2017]
          Length = 220

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62
           F+  +      +      L ++ FF    TI+YP E+   SPR+R  H L R   +G ER
Sbjct: 22  FKDTIKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHHLQRLLDSGSER 81

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C LCE IC +  I I +     D  ++   Y I++ +CIYCGLC E CP  AIV G 
Sbjct: 82  CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140

Query: 123 NFEFATETRQE 133
            FE A+  R +
Sbjct: 141 RFENASTQRSQ 151


>gi|90579196|ref|ZP_01235006.1| NADH-quinone oxidoreductase, chain I [Vibrio angustum S14]
 gi|90440029|gb|EAS65210.1| NADH-quinone oxidoreductase, chain I [Vibrio angustum S14]
          Length = 177

 Score =  118 bits (296), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 54/133 (40%), Positives = 81/133 (60%), Gaps = 1/133 (0%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           L+E  GAF   +++ +  + T+ YP  K     R+RG   L R P+G+ERC+AC LC ++
Sbjct: 7   LQEVTGAFAATIKHVWAPRDTVCYPEVKPDLPERWRGRIVLTRDPDGDERCVACYLCSSV 66

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           CPA AITI+   R  D  R    +++D  +CI+CG+C+EACP  +I    +FE    +R 
Sbjct: 67  CPANAITIQGAER-EDERRYAETFELDFSRCIFCGMCEEACPTLSIQCTTDFEMGKYSRD 125

Query: 133 ELYYDKERLLNNG 145
           +L Y+KE LL +G
Sbjct: 126 KLLYEKEDLLIDG 138


>gi|289548976|ref|YP_003473964.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermocrinis
           albus DSM 14484]
 gi|289182593|gb|ADC89837.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermocrinis
           albus DSM 14484]
          Length = 201

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 17/167 (10%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEH---------- 51
           + F   V  +   +F+    + L+   K   T NYP EK +   RFRG H          
Sbjct: 9   KAFLNLVETVLFVDFIKGLSVTLKNLLKKPITTNYPLEKLTPPKRFRGAHGHFVWDGTEP 68

Query: 52  -------ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
                      +  G+ RC+AC +C+  CP   +      +  DGT++ VR+D++++ C+
Sbjct: 69  NSLKAIEKFMSFEKGKSRCVACYMCQTACPMPTLFRIEAVQMPDGTKKVVRFDMNLLNCL 128

Query: 105 YCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
           +CGLC +ACPV  +     +E A  +R+      E+L  N   W+  
Sbjct: 129 FCGLCVDACPVGCLTMTDLYELAGYSRRNAVLRMEQLEKNAIDWKQR 175


>gi|308064046|gb|ADO05933.1| NADH dehydrogenase subunit I [Helicobacter pylori Sat464]
          Length = 220

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62
           F+  +      +      L ++ FF    TI+YP E+   SPR+R  H L R   +G ER
Sbjct: 22  FKDTIKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHHLQRLLDSGSER 81

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C LCE IC +  I I +     D  ++   Y I++ +CIYCGLC E CP  AIV G 
Sbjct: 82  CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140

Query: 123 NFEFATETRQE 133
            FE A+  R +
Sbjct: 141 RFENASTQRSQ 151


>gi|255533955|ref|YP_003094327.1| NADH-quinone oxidoreductase subunit I [Pedobacter heparinus DSM
           2366]
 gi|255346939|gb|ACU06265.1| NADH-quinone oxidoreductase, chain I [Pedobacter heparinus DSM
           2366]
          Length = 165

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 51/139 (36%), Positives = 75/139 (53%), Gaps = 6/139 (4%)

Query: 11  LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70
           L+L        + + +FFK + TI YP  +   S  FRG H+L+R   G ERC AC LC 
Sbjct: 22  LYLPAIAKGMAITISHFFKKEATIRYPEVEREFSTNFRGMHSLKRDEEGRERCTACGLCA 81

Query: 71  AICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
             CPA+AIT+ +  R           +    Y+I+M++CI+CGLC+EACP +AI      
Sbjct: 82  LSCPAEAITMIAAERKPEEKELYREEKYASVYEINMLRCIFCGLCEEACPKEAIYLDGPI 141

Query: 125 EFATETRQELYYDKERLLN 143
             A   R++  Y K++L+ 
Sbjct: 142 VPADYLRKDFIYGKDKLVE 160


>gi|91975813|ref|YP_568472.1| NADH dehydrogenase subunit I [Rhodopseudomonas palustris BisB5]
 gi|123735639|sp|Q13BG8|NUOI1_RHOPS RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName:
           Full=NADH dehydrogenase I subunit I 1; AltName:
           Full=NDH-1 subunit I 1
 gi|91682269|gb|ABE38571.1| NADH-quinone oxidoreductase, chain I [Rhodopseudomonas palustris
           BisB5]
          Length = 171

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 50/134 (37%), Positives = 67/134 (50%), Gaps = 1/134 (0%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           +  ++ A     R  F    T  YP EK    PR RG   L R P+G+ERC+AC LC  +
Sbjct: 1   MIGWLEAMLRVGRKLFVKAETQLYPEEKPKLYPRSRGRIVLTRDPDGQERCVACNLCAVV 60

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           CP   I +       DG      + I+  +CI+CG C+EACP  AI   P+FE     R 
Sbjct: 61  CPVGCIDLTKA-VADDGRWYPEHFRINFARCIFCGFCEEACPTSAIQLTPDFELGEWRRD 119

Query: 133 ELYYDKERLLNNGD 146
            L Y+K  LL +G+
Sbjct: 120 ALVYEKHDLLISGE 133


>gi|108563637|ref|YP_627953.1| NADH dehydrogenase subunit I [Helicobacter pylori HPAG1]
 gi|115502531|sp|Q1CRZ3|NUOI_HELPH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|107837410|gb|ABF85279.1| NADH-ubiquinone oxidoreductase chain I [Helicobacter pylori HPAG1]
          Length = 220

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62
           F+  +      +      L ++ FF    TI+YP E+   SPR+R  H L R   +G ER
Sbjct: 22  FKDTIKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHHLQRLLDSGSER 81

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C LCE IC +  I I +     D  ++   Y I++ +CIYCGLC E CP  AIV G 
Sbjct: 82  CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140

Query: 123 NFEFATETRQE 133
            FE A+  R +
Sbjct: 141 RFENASTQRSQ 151


>gi|71892259|ref|YP_277993.1| NADH dehydrogenase subunit I [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
 gi|110287759|sp|Q492I3|NUOI_BLOPB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|71796365|gb|AAZ41116.1| NADH dehydrogenase I chain I, 2Fe-2S ferredoxin-related [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
          Length = 181

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 47/145 (32%), Positives = 74/145 (51%), Gaps = 4/145 (2%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M++ +  +    +   + + ++     F  + T  YP      SPR+RG   L R  +G 
Sbjct: 2   MKLKKVFID---IGSILRSIWMIGMQAFSKRETRMYPEVPYIPSPRYRGRIVLTRDSSGR 58

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERC+AC LC   CP   I+++ G     G      + I+  +CI+CG+C+EACP  AI  
Sbjct: 59  ERCVACNLCAVACPVGCISLKKGESTD-GRWYPKFFRINFSRCIFCGMCEEACPTAAIQL 117

Query: 121 GPNFEFATETRQELYYDKERLLNNG 145
            P+FE +   R +L Y+K  LL +G
Sbjct: 118 TPDFEMSDFKRHDLVYEKSDLLISG 142


>gi|210135427|ref|YP_002301866.1| NADH dehydrogenase subunit I [Helicobacter pylori P12]
 gi|226737394|sp|B6JNA8|NUOI_HELP2 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|210133395|gb|ACJ08386.1| NADH-ubiquinone oxidoreductase chain I [Helicobacter pylori P12]
          Length = 220

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 51/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62
           F+  V      +      L ++ FF    TI+YP E+   SPR+R  H L R   +G ER
Sbjct: 22  FKDTVKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHHLQRLLDSGSER 81

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C LCE IC +  I I +     D  ++   Y I++ +CIYCGLC E CP  AIV G 
Sbjct: 82  CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140

Query: 123 NFEFATETRQE 133
            FE A+  R +
Sbjct: 141 RFENASTQRSQ 151


>gi|208435162|ref|YP_002266828.1| NADH-ubiquinone oxidoreductase chain I [Helicobacter pylori G27]
 gi|226737395|sp|B5Z8R3|NUOI_HELPG RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|208433091|gb|ACI27962.1| NADH-ubiquinone oxidoreductase chain I [Helicobacter pylori G27]
          Length = 220

 Score =  117 bits (294), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62
           F+  +      +      L ++ FF    TI+YP E+   SPR+R  H L R   +G ER
Sbjct: 22  FKDTIKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHHLQRLLDSGSER 81

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C LCE IC +  I I +     D  ++   Y I++ +CIYCGLC E CP  AIV G 
Sbjct: 82  CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140

Query: 123 NFEFATETRQE 133
            FE A+  R +
Sbjct: 141 RFENASTQRSQ 151


>gi|15612254|ref|NP_223907.1| NADH dehydrogenase subunit I [Helicobacter pylori J99]
 gi|81555114|sp|Q9ZJV9|NUOI_HELPJ RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|4155779|gb|AAD06755.1| NADH oxidoreductase I [Helicobacter pylori J99]
          Length = 220

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62
           F+  +      +      L ++ FF    TI+YP E+   SPR+R  H L R   +G ER
Sbjct: 22  FKDTIKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHHLQRLLDSGSER 81

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C LCE IC +  I I +     D  ++   Y I++ +CIYCGLC E CP  AIV G 
Sbjct: 82  CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140

Query: 123 NFEFATETRQE 133
            FE A+  R +
Sbjct: 141 RFENASTQRSQ 151


>gi|332674071|gb|AEE70888.1| NADH-quinone oxidoreductase subunit I [Helicobacter pylori 83]
          Length = 220

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62
           F+  +      +      L ++ FF    TI+YP E+   SPR+R  H L R   +G ER
Sbjct: 22  FKDTLKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHHLQRLLDSGSER 81

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C LCE IC +  I I +     D  ++   Y I++ +CIYCGLC E CP  AIV G 
Sbjct: 82  CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140

Query: 123 NFEFATETRQE 133
            FE A+  R +
Sbjct: 141 RFENASTQRSQ 151


>gi|316935778|ref|YP_004110760.1| NADH-quinone oxidoreductase subunit I [Rhodopseudomonas palustris
           DX-1]
 gi|315603492|gb|ADU46027.1| NADH-quinone oxidoreductase, chain I [Rhodopseudomonas palustris
           DX-1]
          Length = 173

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 47/131 (35%), Positives = 67/131 (51%), Gaps = 1/131 (0%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
           ++ A     R  F    T  YP EK    PR RG   L R P+G+ERC+AC LC  +CP 
Sbjct: 6   WLEALLRVGRKLFVKPETQLYPEEKPKLYPRARGRIVLTRDPDGQERCVACNLCATVCPV 65

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
             I +       DG      + ++  +CI+CG C++ACP  AI   P++E +   R  L 
Sbjct: 66  GCIDLSKA-VADDGRWYPEHFRVNFARCIFCGFCEDACPTAAIQLTPDYELSEWRRDALV 124

Query: 136 YDKERLLNNGD 146
           Y+K  LL +G+
Sbjct: 125 YEKHDLLISGE 135


>gi|317178438|dbj|BAJ56226.1| NADH dehydrogenase subunit I [Helicobacter pylori F30]
          Length = 220

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62
           F+  +      +      L ++ FF    TI+YP E+   SPR+R  H L R   +G ER
Sbjct: 22  FKDTLKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHHLQRLLDSGSER 81

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C LCE IC +  I I +     D  ++   Y I++ +CIYCGLC E CP  AIV G 
Sbjct: 82  CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140

Query: 123 NFEFATETRQE 133
            FE A+  R +
Sbjct: 141 RFENASTQRSQ 151


>gi|217032331|ref|ZP_03437827.1| hypothetical protein HPB128_132g29 [Helicobacter pylori B128]
 gi|298735708|ref|YP_003728233.1| NADH dehydrogenase I subunit I [Helicobacter pylori B8]
 gi|216945997|gb|EEC24611.1| hypothetical protein HPB128_132g29 [Helicobacter pylori B128]
 gi|298354897|emb|CBI65769.1| NADH dehydrogenase I chain I [Helicobacter pylori B8]
          Length = 220

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62
           F+  +      +      L ++ FF    TI+YP E+   SPR+R  H L R   +G ER
Sbjct: 22  FKDTIKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHNLQRLLDSGSER 81

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C LCE IC +  I I +     D  ++   Y I++ +CIYCGLC E CP  AIV G 
Sbjct: 82  CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140

Query: 123 NFEFATETRQE 133
            FE A+  R +
Sbjct: 141 RFENASTQRSQ 151


>gi|15645882|ref|NP_208060.1| NADH dehydrogenase subunit I [Helicobacter pylori 26695]
 gi|81341662|sp|O25858|NUOI_HELPY RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|2314433|gb|AAD08312.1| NADH-ubiquinone oxidoreductase, NQO9 subunit (NQO9) [Helicobacter
           pylori 26695]
          Length = 220

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 51/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62
           F+  V      +      L ++ FF    TI+YP E+   SPR+R  H L R   +G ER
Sbjct: 22  FKDTVKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHNLQRLLDSGSER 81

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C LCE IC +  I I +     D  ++   Y I++ +CIYCGLC E CP  AIV G 
Sbjct: 82  CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140

Query: 123 NFEFATETRQE 133
            FE A+  R +
Sbjct: 141 RFENASTQRSQ 151


>gi|116749373|ref|YP_846060.1| NADH dehydrogenase subunit I [Syntrophobacter fumaroxidans MPOB]
 gi|156632695|sp|A0LJM3|NUOI2_SYNFM RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName:
           Full=NADH dehydrogenase I subunit I 2; AltName:
           Full=NDH-1 subunit I 2
 gi|116698437|gb|ABK17625.1| NADH-quinone oxidoreductase, chain I [Syntrophobacter fumaroxidans
           MPOB]
          Length = 178

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 50/127 (39%), Positives = 66/127 (51%), Gaps = 1/127 (0%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F     + F+   T  YP  K +   R R    L R P+G ERC+AC LC A+CP 
Sbjct: 11  LASGFATTFVHLFRKPVTEEYPEVKRALPARTRAVIVLTRDPDGGERCVACYLCSAVCPV 70

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
             I++++  R  DG R    + I+  +CIYCGLC+EACP  AI   P FE       +L 
Sbjct: 71  SCISMQAAER-EDGRRHAAWFRINFARCIYCGLCEEACPTSAIQLTPFFETCERDILKLV 129

Query: 136 YDKERLL 142
           Y+KE LL
Sbjct: 130 YEKEDLL 136


>gi|317178011|dbj|BAJ55800.1| NADH dehydrogenase subunit I [Helicobacter pylori F16]
          Length = 220

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62
           F+  +      +      L ++ FF    TI+YP E+   SPR+R  H L R   +G ER
Sbjct: 22  FKDTLKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHHLQRLLDSGSER 81

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C LCE IC +  I I +     D  ++   Y I++ +CIYCGLC E CP  AIV G 
Sbjct: 82  CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140

Query: 123 NFEFATETRQE 133
            FE A+  R +
Sbjct: 141 RFENASTQRSQ 151


>gi|315587159|gb|ADU41540.1| NADH-quinone oxidoreductase subunit I [Helicobacter pylori 35A]
          Length = 220

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62
           F+  +      +      L ++ FF    TI+YP E+   SPR+R  H L R   +G ER
Sbjct: 22  FKDTLKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHHLQRLLDSGSER 81

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C LCE IC +  I I +     D  ++   Y I++ +CIYCGLC E CP  AIV G 
Sbjct: 82  CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140

Query: 123 NFEFATETRQE 133
            FE A+  R +
Sbjct: 141 RFENASTQRSQ 151


>gi|308062552|gb|ADO04440.1| NADH dehydrogenase subunit I [Helicobacter pylori Cuz20]
          Length = 220

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62
           F+  +      +      L ++ FF    TI+YP E+   SPR+R  H L R   +G ER
Sbjct: 22  FKDTIKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHNLQRLLDSGSER 81

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C LCE IC +  I I +     D  ++   Y I++ +CIYCGLC E CP  AIV G 
Sbjct: 82  CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140

Query: 123 NFEFATETRQE 133
            FE A+  R +
Sbjct: 141 RFENASTQRSQ 151


>gi|217033589|ref|ZP_03439017.1| hypothetical protein HP9810_899g25 [Helicobacter pylori 98-10]
 gi|216943935|gb|EEC23369.1| hypothetical protein HP9810_899g25 [Helicobacter pylori 98-10]
          Length = 220

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62
           F+  +      +      L ++ FF    TI+YP E+   SPR+R  H L R   +G ER
Sbjct: 22  FKDTLKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHHLQRLLDSGSER 81

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C LCE IC +  I I +     D  ++   Y I++ +CIYCGLC E CP  AIV G 
Sbjct: 82  CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140

Query: 123 NFEFATETRQE 133
            FE A+  R +
Sbjct: 141 RFENASTQRSQ 151


>gi|188528057|ref|YP_001910744.1| NADH dehydrogenase subunit I [Helicobacter pylori Shi470]
 gi|226737396|sp|B2UV32|NUOI_HELPS RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|188144297|gb|ACD48714.1| NADH dehydrogenase subunit I [Helicobacter pylori Shi470]
          Length = 220

 Score =  117 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62
           F+  +      +      L ++ FF    TI+YP E+   SPR+R  H L R   +G ER
Sbjct: 22  FKDTIKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHNLQRLLDSGSER 81

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C LCE IC +  I I +     D  ++   Y I++ +CIYCGLC E CP  AIV G 
Sbjct: 82  CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140

Query: 123 NFEFATETRQE 133
            FE A+  R +
Sbjct: 141 RFENASTQRSQ 151


>gi|308183378|ref|YP_003927505.1| NADH dehydrogenase subunit I [Helicobacter pylori PeCan4]
 gi|308065563|gb|ADO07455.1| NADH dehydrogenase subunit I [Helicobacter pylori PeCan4]
          Length = 220

 Score =  117 bits (293), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62
           F+  +      +      L ++ FF    TI+YP E+   SPR+R  H L R   +G ER
Sbjct: 22  FKDTIKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHNLQRLLDSGSER 81

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C LCE IC +  I I +     D  ++   Y I++ +CIYCGLC E CP  AIV G 
Sbjct: 82  CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140

Query: 123 NFEFATETRQE 133
            FE A+  R +
Sbjct: 141 RFENASTQRSQ 151


>gi|297380448|gb|ADI35335.1| NADH-quinone oxidoreductase, chain I [Helicobacter pylori v225d]
          Length = 220

 Score =  117 bits (293), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62
           F+  +      +      L ++ FF    TI+YP E+   SPR+R  H L R   +G ER
Sbjct: 22  FKDTIKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHNLQRLLDSGSER 81

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C LCE IC +  I I +     D  ++   Y I++ +CIYCGLC E CP  AIV G 
Sbjct: 82  CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140

Query: 123 NFEFATETRQE 133
            FE A+  R +
Sbjct: 141 RFENASTQRSQ 151


>gi|261838591|gb|ACX98357.1| NADH-ubiquinone oxidoreductase chain I [Helicobacter pylori 51]
 gi|317180994|dbj|BAJ58780.1| NADH dehydrogenase subunit I [Helicobacter pylori F32]
          Length = 220

 Score =  117 bits (293), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62
           F+  +      +      L ++ FF    TI+YP E+   SPR+R  H L R   +G ER
Sbjct: 22  FKDTLKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHHLQRLLDSGSER 81

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C LCE IC +  I I +     D  ++   Y I++ +CIYCGLC E CP  AIV G 
Sbjct: 82  CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140

Query: 123 NFEFATETRQE 133
            FE A+  R +
Sbjct: 141 RFENASTQRSQ 151


>gi|317013056|gb|ADU83664.1| NADH dehydrogenase subunit I [Helicobacter pylori Lithuania75]
          Length = 220

 Score =  117 bits (293), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 51/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62
           F+  V      +      L ++ FF    TI+YP E+   SPR+R  H L R   +G ER
Sbjct: 22  FKDTVKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHNLQRLLDSGSER 81

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C LCE IC +  I I +     D  ++   Y I++ +CIYCGLC E CP  AIV G 
Sbjct: 82  CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140

Query: 123 NFEFATETRQE 133
            FE A+  R +
Sbjct: 141 RFENASTQRSQ 151


>gi|207091606|ref|ZP_03239393.1| NADH dehydrogenase subunit I [Helicobacter pylori HPKX_438_AG0C1]
          Length = 220

 Score =  117 bits (293), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62
           F+  +      +      L ++ FF    TI+YP E+   SPR+R  H L R   +G ER
Sbjct: 22  FKDTIKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHNLQRLLDSGSER 81

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C LCE IC +  I I +     D  ++   Y I++ +CIYCGLC E CP  AIV G 
Sbjct: 82  CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140

Query: 123 NFEFATETRQE 133
            FE A+  R +
Sbjct: 141 RFENASTQRSQ 151


>gi|317009952|gb|ADU80532.1| NADH dehydrogenase subunit I [Helicobacter pylori India7]
          Length = 220

 Score =  117 bits (293), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 51/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62
           F+  V      +      L ++ FF    TI+YP E+   SPR+R  H L R   +G ER
Sbjct: 22  FKDTVKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHNLQRLLDSGSER 81

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C LCE IC +  I I +     D  ++   Y I++ +CIYCGLC E CP  AIV G 
Sbjct: 82  CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140

Query: 123 NFEFATETRQE 133
            FE A+  R +
Sbjct: 141 RFENASTQRSQ 151


>gi|315023108|gb|EFT36121.1| NADH-ubiquinone oxidoreductase chain I [Riemerella anatipestifer
           RA-YM]
          Length = 161

 Score =  117 bits (293), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 50/139 (35%), Positives = 73/139 (52%), Gaps = 6/139 (4%)

Query: 12  FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71
           +L   V    + L++FFK  +TI YP ++   +  +RG H L+R   G ERC AC LC  
Sbjct: 8   YLPAIVKGMSITLKHFFKKDSTIQYPEQEKPRAKVWRGRHVLKRDDEGRERCTACGLCAV 67

Query: 72  ICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
            CPA+AIT+ S  R           +    Y+I+M++CI+CGLC+EACP  AI       
Sbjct: 68  ACPAEAITMTSAERTKEEKHLYREEKYASTYEINMLRCIFCGLCEEACPKSAIYLTDRLV 127

Query: 126 FATETRQELYYDKERLLNN 144
                R    Y K++L+ +
Sbjct: 128 DVESNRGSFVYGKDKLVED 146


>gi|71065158|ref|YP_263885.1| NADH dehydrogenase subunit I [Psychrobacter arcticus 273-4]
 gi|110287768|sp|Q4FU57|NUOI_PSYA2 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|71038143|gb|AAZ18451.1| NADH dehydrogenase I, subunit I [Psychrobacter arcticus 273-4]
          Length = 182

 Score =  117 bits (293), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 53/133 (39%), Positives = 75/133 (56%), Gaps = 1/133 (0%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           L   V + ++   +  + + TI YP       PRFRG   L R P+G+ERC+AC LC   
Sbjct: 12  LFTIVRSMWMVNSHAIRPRDTILYPEVPVPVPPRFRGRIILSRDPDGDERCVACNLCAVA 71

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           CP   I+++   R  DG      + I+  +CI+CGLC+EACP  AI   P+FE +   RQ
Sbjct: 72  CPVGCISLQKAER-EDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQMTPDFEMSEYVRQ 130

Query: 133 ELYYDKERLLNNG 145
           +L Y+KE LL +G
Sbjct: 131 DLVYEKEHLLISG 143


>gi|285808569|gb|ADC36090.1| NADH-quinone oxidoreductase subunit 9 [uncultured bacterium 164]
          Length = 173

 Score =  117 bits (293), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 51/135 (37%), Positives = 68/135 (50%), Gaps = 7/135 (5%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +      L    +AK T+ YP    +  PR+RG+H L     G+E+C+AC LC A CP+
Sbjct: 14  VIKGMKRTLSEIPRAKWTVQYPDVPITVQPRYRGQHLLHVDEAGKEKCVACYLCAAACPS 73

Query: 76  QAITIESG-------PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
             I IE+         R     R    Y+ID  +CI+CG C EACP DAI  G NFE + 
Sbjct: 74  DCIYIEAEDDPRPYAERVGRDERYARVYNIDYGRCIFCGFCVEACPKDAITHGYNFEISV 133

Query: 129 ETRQELYYDKERLLN 143
             R +L   K+ LL 
Sbjct: 134 YNRADLLKTKDDLLI 148


>gi|283778526|ref|YP_003369281.1| NADH-quinone oxidoreductase, chain I [Pirellula staleyi DSM 6068]
 gi|283436979|gb|ADB15421.1| NADH-quinone oxidoreductase, chain I [Pirellula staleyi DSM 6068]
          Length = 185

 Score =  117 bits (293), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 49/165 (29%), Positives = 79/165 (47%), Gaps = 18/165 (10%)

Query: 1   MRIFRCNVSFL-----------FLKEFVGAFFLCLRYFFKA----KTTINYPFEKGST-- 43
           M+    N+ ++           ++  FV       ++  K+      T++YP E+     
Sbjct: 1   MKTSDPNIKWIEEPQLGLAGRLYVPLFVQGLTTTFKHLKKSLVGDVVTVSYPEEEPKIGN 60

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC-HDGTRRTVRYDIDMIK 102
              +RG H L +   G  +C+AC LC   CPA  I I +      D  +    + ID ++
Sbjct: 61  PLIYRGVHRLNKDKEGRVKCVACFLCATACPAHCIDIVAAESPWSDRDKYPQSFAIDELR 120

Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDR 147
           CIYCG+C+EACPVDAI     +     +R+E+ +DKE+LL+  D 
Sbjct: 121 CIYCGMCEEACPVDAIELTSLYNLTGRSREEMVFDKEKLLSVYDE 165


>gi|219847958|ref|YP_002462391.1| NADH-quinone oxidoreductase subunit I [Chloroflexus aggregans DSM
           9485]
 gi|219542217|gb|ACL23955.1| NADH-quinone oxidoreductase, chain I [Chloroflexus aggregans DSM
           9485]
          Length = 165

 Score =  117 bits (292), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 58/141 (41%), Positives = 76/141 (53%), Gaps = 5/141 (3%)

Query: 12  FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71
            +KE V      LRY FK   T+ YP  K     RFRG H L+R+ NG+ERCI C LC A
Sbjct: 1   MIKELVKGLGTTLRYLFKPPVTVQYPEVKRPVRERFRGRHELKRFANGQERCIGCALCAA 60

Query: 72  ICPAQAITIESGPRCH-----DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
            CPA AI +             G R    Y+I+M++CI+CG C++ACP +AIV    +E 
Sbjct: 61  ACPADAILVIPAENDPANPRSPGERYAAVYEINMLRCIFCGYCEDACPTNAIVLEHQYEL 120

Query: 127 ATETRQELYYDKERLLNNGDR 147
           +   R+   Y KE LL   D+
Sbjct: 121 SFYDRRAAIYTKEMLLVPPDK 141


>gi|254779811|ref|YP_003057917.1| NADH dehydrogenase subunit I [Helicobacter pylori B38]
 gi|254001723|emb|CAX29954.1| NADH-ubiquinone oxidoreductase, NQO9 subunit [Helicobacter pylori
           B38]
          Length = 220

 Score =  117 bits (292), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 51/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62
           F+  V      +      L ++ FF    TI+YP E+   SPR+R  H L R   +G ER
Sbjct: 22  FKDTVKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHNLQRLLDSGSER 81

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C LCE IC +  I I +     D  ++   Y I++ +CIYCGLC E CP  AIV G 
Sbjct: 82  CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140

Query: 123 NFEFATETRQE 133
            FE A+  R +
Sbjct: 141 RFENASTQRSQ 151


>gi|225848115|ref|YP_002728278.1| NADH-quinone oxidoreductase subunit iota [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225643255|gb|ACN98305.1| NADH-quinone oxidoreductase subunit i [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 200

 Score =  117 bits (292), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 45/168 (26%), Positives = 80/168 (47%), Gaps = 17/168 (10%)

Query: 8   VSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHA--------------- 52
           +  +F  +F+    + L+  FK   T  YP+EK +   RFRG HA               
Sbjct: 15  IEKIFFLDFIKGLKVTLKNLFKKTITTKYPYEKITPPKRFRGTHAHRVKDGNEPPSFSVL 74

Query: 53  --LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
                   GE RC+AC +C+  CP  ++      +  +G ++ VR+D++++ C+YCGLC 
Sbjct: 75  EKFMDINTGESRCVACYMCQQACPMPSLFRIEAVQLPNGKKKVVRFDMNLLNCLYCGLCV 134

Query: 111 EACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158
           +ACPVD ++    +E A   R++     + +   G  ++S  ++    
Sbjct: 135 DACPVDCLIMTDIYETAKYQREKCVIQMDDMSERGRDFDSRRLKEPDR 182


>gi|261839986|gb|ACX99751.1| NADH dehydrogenase I, I subunit [Helicobacter pylori 52]
          Length = 220

 Score =  117 bits (292), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62
           F+  +      +      L ++ FF    TI+YP E+   SPR+R  H L R   +G ER
Sbjct: 22  FKDTLKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHNLQRLLDSGSER 81

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C LCE IC +  I I +     D  ++   Y I++ +CIYCGLC E CP  AIV G 
Sbjct: 82  CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140

Query: 123 NFEFATETRQE 133
            FE A+  R +
Sbjct: 141 RFENASTQRSQ 151


>gi|313836208|gb|EFS73922.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL037PA2]
 gi|314927643|gb|EFS91474.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL044PA1]
 gi|314971358|gb|EFT15456.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL037PA3]
 gi|328906295|gb|EGG26070.1| NADH-quinone oxidoreductase, chain I [Propionibacterium sp. P08]
          Length = 198

 Score =  117 bits (292), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 45/134 (33%), Positives = 67/134 (50%), Gaps = 7/134 (5%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFE--KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP 74
              F +     F+   T  YP +  +    PR  G H L R+P+G E+C+ C+LC   CP
Sbjct: 4   WSGFGITFETMFRKPFTQGYPEKGKEKPMPPRMHGRHQLNRWPDGLEKCVGCELCAWACP 63

Query: 75  AQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           A AI +E        R   G R    Y+I+ ++CI CG+C EACP  A+    +F+ A  
Sbjct: 64  ADAIYVEGADNTDEERYSPGERYGRVYEINYLRCILCGMCIEACPTRALTMTNDFKMADT 123

Query: 130 TRQELYYDKERLLN 143
           +R +  + K+ LL 
Sbjct: 124 SRAKHIWTKDELLA 137


>gi|109946837|ref|YP_664065.1| NADH dehydrogenase subunit I [Helicobacter acinonychis str. Sheeba]
 gi|123066349|sp|Q17Z60|NUOI_HELAH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|109714058|emb|CAJ99066.1| NADH dehydrogenase I chain I [Helicobacter acinonychis str. Sheeba]
          Length = 220

 Score =  116 bits (291), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62
           F+  +      +      L ++ FF    TI+YP E+   SPR+R  H L R   +G ER
Sbjct: 22  FKDTIKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHNLQRLLDSGSER 81

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C LCE IC +  I I +     D  ++   Y I++ +CIYCGLC E CP  AIV G 
Sbjct: 82  CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140

Query: 123 NFEFATETRQE 133
            FE A+  R +
Sbjct: 141 RFENASTQRSQ 151


>gi|317182517|dbj|BAJ60301.1| NADH dehydrogenase subunit I [Helicobacter pylori F57]
          Length = 220

 Score =  116 bits (291), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62
           F+  +      +      L ++ FF    TI+YP E+   SPR+R  H L R   +G ER
Sbjct: 22  FKDTLKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHNLQRLLDSGSER 81

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C LCE IC +  I I +     D  ++   Y I++ +CIYCGLC E CP  AIV G 
Sbjct: 82  CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140

Query: 123 NFEFATETRQE 133
            FE A+  R +
Sbjct: 141 RFENASTQRSQ 151


>gi|189220227|ref|YP_001940867.1| NADH dehydrogenase subunit I [Methylacidiphilum infernorum V4]
 gi|189187085|gb|ACD84270.1| NADH dehydrogenase subunit I [Methylacidiphilum infernorum V4]
          Length = 174

 Score =  116 bits (291), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 54/172 (31%), Positives = 85/172 (49%), Gaps = 21/172 (12%)

Query: 1   MRIFRCNVSFL---FLKEFVGAFFLCLRYFF-----KAKTTINYPFEKGSTSPRFRGEHA 52
           M + R  ++     +L   +    + L++F+     K + T+ YP EK    P FRG   
Sbjct: 3   MIVKRPELNLFEKTYLPGIIQGLGITLKHFWDRITGKTRVTLEYPEEKPKLPPGFRGAPL 62

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCH-----DGTRRTVRYDIDMIKCIYCG 107
           L +   G E+C++C++CE ICP +AI I  G            +    + IDM +CIYCG
Sbjct: 63  LVKDEEGREKCVSCQMCEFICPPRAIRIIPGEIPPGDKYAKVEKAPEEFFIDMTRCIYCG 122

Query: 108 LCQEACPVDAIVEGP-NFEFATETRQELYYDKERLLNNG-------DRWESE 151
           LC+E CP +AI   P  +  +  +RQ+L +DK+ L   G        +WE +
Sbjct: 123 LCEEVCPEEAIFLLPKIYSLSGYSRQDLVHDKKTLYELGGVYPLPIRKWEKK 174


>gi|163848448|ref|YP_001636492.1| NADH-quinone oxidoreductase subunit I [Chloroflexus aurantiacus
           J-10-fl]
 gi|222526376|ref|YP_002570847.1| NADH-quinone oxidoreductase subunit I [Chloroflexus sp. Y-400-fl]
 gi|163669737|gb|ABY36103.1| NADH-quinone oxidoreductase, chain I [Chloroflexus aurantiacus
           J-10-fl]
 gi|222450255|gb|ACM54521.1| NADH-quinone oxidoreductase, chain I [Chloroflexus sp. Y-400-fl]
          Length = 165

 Score =  116 bits (291), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 58/141 (41%), Positives = 76/141 (53%), Gaps = 5/141 (3%)

Query: 12  FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71
            +KE V      LRY FK   T+ YP  K     RFRG H L+R+ NG+ERCI C LC A
Sbjct: 1   MIKELVKGLGTTLRYMFKRPVTVQYPEVKRPVRERFRGRHELKRFANGQERCIGCALCAA 60

Query: 72  ICPAQAITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
            CPA AI +             G R    Y+I+M++CI+CG C++ACP +AIV    +E 
Sbjct: 61  ACPADAILVIPAENDPQNPRSPGERYAAVYEINMLRCIFCGYCEDACPTNAIVLEHQYEL 120

Query: 127 ATETRQELYYDKERLLNNGDR 147
           +   R+   Y KE LL   D+
Sbjct: 121 SFYDRRAAIYTKEMLLVPPDK 141


>gi|192293097|ref|YP_001993702.1| NADH dehydrogenase subunit I [Rhodopseudomonas palustris TIE-1]
 gi|192286846|gb|ACF03227.1| NADH-quinone oxidoreductase, chain I [Rhodopseudomonas palustris
           TIE-1]
          Length = 173

 Score =  116 bits (291), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 46/131 (35%), Positives = 68/131 (51%), Gaps = 1/131 (0%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
           ++ A     R  F    T  YP +K    PR RG   L R P+G+ERC+AC LC  +CP 
Sbjct: 6   WLEALLRVGRKLFVKPETQLYPEQKPKLYPRARGRIVLTRDPDGQERCVACNLCATVCPV 65

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
             I + +     DG      + ++  +CI+CG C++ACP  AI   P++E +   R  L 
Sbjct: 66  GCIDL-AKAVADDGRWYPEHFRVNFARCIFCGFCEDACPTAAIQLTPDYELSEWRRDALV 124

Query: 136 YDKERLLNNGD 146
           Y+K  LL +G+
Sbjct: 125 YEKHDLLISGE 135


>gi|288819089|ref|YP_003433437.1| NADH dehydrogenase I chain I [Hydrogenobacter thermophilus TK-6]
 gi|288788489|dbj|BAI70236.1| NADH dehydrogenase I chain I [Hydrogenobacter thermophilus TK-6]
 gi|308752672|gb|ADO46155.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Hydrogenobacter thermophilus TK-6]
          Length = 201

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 17/167 (10%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEH---------- 51
           + F   V  +   +F+    + LR   +   TINYP EK +   R+RG H          
Sbjct: 9   KAFLNIVEAVLFVDFIKGLSVTLRNLLRRPITINYPLEKLTLPKRYRGAHGHFVWDGTEP 68

Query: 52  -------ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
                      Y  G+ RC+AC +C+  CP   +      +  DGT++ VR+D+++  C+
Sbjct: 69  DSLKAIGKFMSYEKGKSRCVACYMCQTACPMPTLFRIEAVQMPDGTKKVVRFDMNLYNCL 128

Query: 105 YCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
           +CGLC +ACPV  +      E A  +R    Y  E L  +   W+  
Sbjct: 129 FCGLCVDACPVGCLTMTDLHELAGYSRASGVYRMEDLERHAIDWKKR 175


>gi|93005410|ref|YP_579847.1| NADH dehydrogenase subunit I [Psychrobacter cryohalolentis K5]
 gi|110287769|sp|Q1QD90|NUOI_PSYCK RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|92393088|gb|ABE74363.1| NADH-quinone oxidoreductase, chain I [Psychrobacter cryohalolentis
           K5]
          Length = 182

 Score =  116 bits (291), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 53/133 (39%), Positives = 74/133 (55%), Gaps = 1/133 (0%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           L   V + ++   +  + + TI YP       PRFRG   L R P+G+ERC+AC LC   
Sbjct: 12  LFTIVRSMWMVNSHALRPRDTILYPEVPVPVPPRFRGRIILSRDPDGDERCVACNLCAVA 71

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           CP   I+++   R  DG      + I+  +CI+CGLC+EACP  AI   P+FE     RQ
Sbjct: 72  CPVGCISLQKAER-EDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQMTPDFEMGEYVRQ 130

Query: 133 ELYYDKERLLNNG 145
           +L Y+KE LL +G
Sbjct: 131 DLVYEKEHLLISG 143


>gi|255037827|ref|YP_003088448.1| NADH-quinone oxidoreductase, chain I [Dyadobacter fermentans DSM
           18053]
 gi|254950583|gb|ACT95283.1| NADH-quinone oxidoreductase, chain I [Dyadobacter fermentans DSM
           18053]
          Length = 197

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 47/140 (33%), Positives = 72/140 (51%), Gaps = 7/140 (5%)

Query: 12  FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71
           +L        + +++FF  K TI YP  K    P FRG H L+R   G ERC AC LC  
Sbjct: 22  YLPAIATGLAITIKHFFSKKVTIQYPEVKRYLGPVFRGRHILKRDAEGRERCTACGLCAV 81

Query: 72  ICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE-GPNF 124
            CPA+AI++ +  R           +    Y+++M++CI+CGLC+EACP  A+      F
Sbjct: 82  ACPAEAISMVAAERVKGEENLYREEKYAAVYEVNMLRCIFCGLCEEACPKQAVYLRHDEF 141

Query: 125 EFATETRQELYYDKERLLNN 144
                 R ++ + K+ L+ +
Sbjct: 142 VPVFTERDQVIWGKDLLVED 161


>gi|162448798|ref|YP_001611165.1| NADH dehydrogenase I chain I [Sorangium cellulosum 'So ce 56']
 gi|161159380|emb|CAN90685.1| NADH dehydrogenase I chain I [Sorangium cellulosum 'So ce 56']
          Length = 224

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 53/174 (30%), Positives = 77/174 (44%), Gaps = 26/174 (14%)

Query: 12  FLKEFVGAFFLCLRYFFKAK--------------------TTINYPFEKGSTSPRFRGEH 51
           ++ E V    + +++FFK                      TTI+YP EK     RFRG H
Sbjct: 35  YIPEMVKGLGITMKHFFKNTKEMVLGQKPDPVLHALEPGVTTISYPEEKRPYPERFRGIH 94

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGP-----RCHDGTRRTVRYDIDMIKCIYC 106
            L    +   RC+AC  C   CPAQ I IE        R     R    + ID ++C++C
Sbjct: 95  RLTLREDNSPRCVACLCCSTACPAQCIAIEPAEYPDGDRRKGYERYPSSFVIDELRCVFC 154

Query: 107 GLCQEACPVDAIVE-GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
           G C EACPVDAI           ++R++  Y ++ L++  DR  S +  N   +
Sbjct: 155 GFCVEACPVDAIRMDTGLHAVPYDSREQFIYRRDLLMSLSDRSGSRLTANKRHE 208


>gi|317014660|gb|ADU82096.1| NADH dehydrogenase subunit I [Helicobacter pylori Gambia94/24]
          Length = 219

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62
           F+  +      +      L ++ FF    TI+YP E+   SPR+R  H L R   +G ER
Sbjct: 22  FKDTIKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHNLQRLLDSGSER 81

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C LCE IC +  I I +     D  ++   Y I++ +CIYCGLC E CP  AIV G 
Sbjct: 82  CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140

Query: 123 NFEFATETRQE 133
            FE A+  R +
Sbjct: 141 RFENASTQRSQ 151


>gi|320105159|ref|YP_004180750.1| NADH dehydrogenase subunit I [Isosphaera pallida ATCC 43644]
 gi|319752441|gb|ADV64201.1| NADH dehydrogenase subunit I [Isosphaera pallida ATCC 43644]
          Length = 201

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 44/142 (30%), Positives = 67/142 (47%), Gaps = 7/142 (4%)

Query: 12  FLKEFVGAFFLCLRYFFK----AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACK 67
           +L + +    L   +          T  YP E  + S  +RG H L +   G  +C+AC 
Sbjct: 23  YLPQVLSGLALTAHHMLGTVMGRHLTSQYPEEVHTPSQNYRGVHRLNKDEEGRVKCVACM 82

Query: 68  LCEAICPAQAITIESGPRCHDGT---RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           LC   CP   I I             +    + ID ++CIYCG+C+EACPVDAI     +
Sbjct: 83  LCATACPVHCIDIVPATAPPSWPDREKYPESFVIDELRCIYCGMCEEACPVDAIELTGLY 142

Query: 125 EFATETRQELYYDKERLLNNGD 146
           +    +R+E+ +DK +LL+  D
Sbjct: 143 DLTGLSREEMIFDKTKLLSVFD 164


>gi|314965050|gb|EFT09149.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL082PA2]
 gi|315093910|gb|EFT65886.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL060PA1]
 gi|327325778|gb|EGE67570.1| NADH-quinone oxidoreductase, I subunit [Propionibacterium acnes
           HL103PA1]
          Length = 199

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 45/134 (33%), Positives = 67/134 (50%), Gaps = 7/134 (5%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFE--KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP 74
              F +     F+   T  YP +  +    PR  G H L R+P+G E+C+ C+LC   CP
Sbjct: 4   WSGFGITFETMFRKSFTQGYPEKGKEKPMPPRMHGRHQLNRWPDGLEKCVGCELCAWACP 63

Query: 75  AQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           A AI +E        R   G R    Y+I+ ++CI CG+C EACP  A+    +F+ A  
Sbjct: 64  ADAIYVEGADNTDEERYSPGERYGRVYEINYLRCILCGMCIEACPTRALTMTNDFKMADT 123

Query: 130 TRQELYYDKERLLN 143
           +R +  + K+ LL 
Sbjct: 124 SRAKHIWTKDELLA 137


>gi|269837680|ref|YP_003319908.1| NADH-quinone oxidoreductase, chain I [Sphaerobacter thermophilus
           DSM 20745]
 gi|269786943|gb|ACZ39086.1| NADH-quinone oxidoreductase, chain I [Sphaerobacter thermophilus
           DSM 20745]
          Length = 148

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/134 (37%), Positives = 68/134 (50%), Gaps = 2/134 (1%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPN-GEERCIACKLCEA 71
           + + V  F++  R  F    TI YP EK   +PRFRG  +LR  P  GE  C+AC LC  
Sbjct: 1   MLDEVKGFWVTFRRLFTPNVTIQYPEEKRQMAPRFRGLPSLRADPETGEPLCVACGLCAR 60

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           ICP   + +   P   +G R    + +   +C++CG+C + CPVDAI     +E AT  R
Sbjct: 61  ICPTSCLEMTVVP-SEEGDRELAEFILRSGRCLFCGMCAQVCPVDAITMSGEYELATLQR 119

Query: 132 QELYYDKERLLNNG 145
             L Y K  L   G
Sbjct: 120 DGLIYTKTELAAIG 133


>gi|282855266|ref|ZP_06264598.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes J139]
 gi|282581854|gb|EFB87239.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes J139]
 gi|314923986|gb|EFS87817.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL001PA1]
 gi|314983070|gb|EFT27162.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL110PA3]
 gi|315090603|gb|EFT62579.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL110PA4]
 gi|315104129|gb|EFT76105.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL050PA2]
          Length = 199

 Score =  115 bits (289), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 45/134 (33%), Positives = 67/134 (50%), Gaps = 7/134 (5%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFE--KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP 74
              F +     F+   T  YP +  +    PR  G H L R+P+G E+C+ C+LC   CP
Sbjct: 4   WSGFGITFETMFRKSFTQGYPEKGKEKPMPPRMHGRHQLNRWPDGLEKCVGCELCAWACP 63

Query: 75  AQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           A AI +E        R   G R    Y+I+ ++CI CG+C EACP  A+    +F+ A  
Sbjct: 64  ADAIYVEGADNTDEERYSPGERYGRVYEINYLRCILCGMCIEACPTRALTMTNDFKMADT 123

Query: 130 TRQELYYDKERLLN 143
           +R +  + K+ LL 
Sbjct: 124 SRAKHIWTKDELLA 137


>gi|116622976|ref|YP_825132.1| NADH-quinone oxidoreductase subunit I [Candidatus Solibacter
           usitatus Ellin6076]
 gi|122253832|sp|Q01ZR8|NUOI1_SOLUE RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName:
           Full=NADH dehydrogenase I subunit I 1; AltName:
           Full=NDH-1 subunit I 1
 gi|116226138|gb|ABJ84847.1| NADH-quinone oxidoreductase, chain I [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 167

 Score =  115 bits (289), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 50/132 (37%), Positives = 63/132 (47%), Gaps = 5/132 (3%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 +  +       T +YP        RFRG H L+R  NG E+C+AC LC A CP+
Sbjct: 15  IAKGMGITFKEMMGPTVTDDYPDAPPKFEERFRGVHVLQRDVNGMEKCVACFLCAAACPS 74

Query: 76  QAITIESGP-----RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
             I IE+       R   G R    Y+ID  +CI+CG C EACP DAI  G  FE A+  
Sbjct: 75  NCIYIEAAENTDKIRMSGGERYAKVYNIDYNRCIFCGYCVEACPTDAITHGHGFEAASYN 134

Query: 131 RQELYYDKERLL 142
              L   KE +L
Sbjct: 135 TSTLVKRKEDML 146


>gi|332971771|gb|EGK10719.1| NADH-quinone oxidoreductase subunit I [Desmospora sp. 8437]
          Length = 150

 Score =  115 bits (289), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 59/134 (44%), Gaps = 5/134 (3%)

Query: 11  LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70
           + +   +    + L+   + K T  YP E      RFRG   L       ++CI C  C 
Sbjct: 5   IHMMGLIKGMGVTLKTMTQKKVTHKYPDEPMPMPDRFRGIQYL-----DPDKCIVCNQCA 59

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
            +CP   IT+          +    +DI+   CI C LC E CP +AIV   NFE A+ +
Sbjct: 60  RVCPTDCITLTGRKHPEKRGKVIDTFDINFEICILCDLCTEVCPTEAIVMTHNFELASYS 119

Query: 131 RQELYYDKERLLNN 144
           R +L+ D   L  N
Sbjct: 120 RDDLFKDIHWLQEN 133


>gi|86748479|ref|YP_484975.1| NADH dehydrogenase subunit I [Rhodopseudomonas palustris HaA2]
 gi|115502508|sp|Q2J0E6|NUOI1_RHOP2 RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName:
           Full=NADH dehydrogenase I subunit I 1; AltName:
           Full=NDH-1 subunit I 1
 gi|86571507|gb|ABD06064.1| NADH-quinone oxidoreductase, chain I [Rhodopseudomonas palustris
           HaA2]
          Length = 171

 Score =  115 bits (289), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 51/134 (38%), Positives = 67/134 (50%), Gaps = 1/134 (0%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           +  ++ A     R  F    T  YP EK    PR RG   L R P+G+ERC+AC LC A+
Sbjct: 1   MIGWLEAMLRVGRKLFVKAETQLYPEEKPKLFPRSRGRIVLTRDPDGQERCVACNLCAAV 60

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           CP   I +       DG      + I+  +CI+CG C+EACP  AI   P+FE     R 
Sbjct: 61  CPVGCIDLSKA-VADDGRWYPEHFRINFARCIFCGFCEEACPTAAIQLTPDFELGEWRRD 119

Query: 133 ELYYDKERLLNNGD 146
            L Y+K  LL  G+
Sbjct: 120 ALVYEKHDLLIAGE 133


>gi|51893910|ref|YP_076601.1| NADH dehydrogenase I subunit I [Symbiobacterium thermophilum IAM
           14863]
 gi|81388111|sp|Q67KP1|NUOI2_SYMTH RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName:
           Full=NADH dehydrogenase I subunit I 2; AltName:
           Full=NDH-1 subunit I 2
 gi|51857599|dbj|BAD41757.1| NADH dehydrogenase I subunit I [Symbiobacterium thermophilum IAM
           14863]
          Length = 240

 Score =  115 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 43/139 (30%), Positives = 64/139 (46%), Gaps = 2/139 (1%)

Query: 14  KEFVGAFFLCLR-YFFKAKTTINYPFEKGSTSPRFRGEHALRRY-PNGEERCIACKLCEA 71
           K  V    +  R   F+   T+ YP ++    P FRG   L+     GE +C +C  C  
Sbjct: 15  KSIVTGLGITFREMMFRPAITVFYPEQRDDVPPWFRGIPVLKTDLRTGEYKCTSCMQCAQ 74

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
            CP   ITIE         +   R+ IDM +C+ C  C EACP D++V G ++E      
Sbjct: 75  ACPVNVITIEWHQDPETKKKVCDRFAIDMSRCMLCNFCVEACPFDSLVMGYDYELCKVNP 134

Query: 132 QELYYDKERLLNNGDRWES 150
           + L ++ E LL  G ++  
Sbjct: 135 ENLVFEFEDLLRLGLKYSK 153


>gi|94968872|ref|YP_590920.1| NADH-quinone oxidoreductase, chain I [Candidatus Koribacter
           versatilis Ellin345]
 gi|156632693|sp|Q1IQK4|NUOI2_ACIBL RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName:
           Full=NADH dehydrogenase I subunit I 2; AltName:
           Full=NDH-1 subunit I 2
 gi|94550922|gb|ABF40846.1| NADH dehydrogenase subunit I [Candidatus Koribacter versatilis
           Ellin345]
          Length = 175

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 55/137 (40%), Positives = 65/137 (47%), Gaps = 10/137 (7%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTS-----PRFRGEHALRRYPNGEERCIACKLCE 70
                 +     FK  T  NYP   G         RFRG H L+R  NG E+C+AC LC 
Sbjct: 10  IAKGMGITFSEMFKPTTVENYPDGPGVLRGAVFQERFRGMHVLQRDENGLEKCVACFLCA 69

Query: 71  AICPAQAITIESGPRCHDGT-----RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           A CP+  I IE+             R    Y+ID  +CI+CG C EACP DAI  G  FE
Sbjct: 70  AACPSNCIYIEAAENTETNRVSGAERYAKVYNIDYNRCIFCGYCVEACPTDAITHGHGFE 129

Query: 126 FATETRQELYYDKERLL 142
            AT     L Y KE+LL
Sbjct: 130 LATFNASNLVYRKEQLL 146


>gi|50843378|ref|YP_056605.1| NADH dehydrogenase subunit I [Propionibacterium acnes KPA171202]
 gi|289426989|ref|ZP_06428708.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes J165]
 gi|295131452|ref|YP_003582115.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           SK137]
 gi|81692381|sp|Q6A6G6|NUOI_PROAC RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|50840980|gb|AAT83647.1| NADH dehydrogenase I chain I [Propionibacterium acnes KPA171202]
 gi|289159811|gb|EFD07996.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes J165]
 gi|291377349|gb|ADE01204.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           SK137]
 gi|313763292|gb|EFS34656.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL013PA1]
 gi|313773338|gb|EFS39304.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL074PA1]
 gi|313793600|gb|EFS41640.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL110PA1]
 gi|313802889|gb|EFS44102.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL110PA2]
 gi|313806335|gb|EFS44851.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL087PA2]
 gi|313810759|gb|EFS48473.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL083PA1]
 gi|313813682|gb|EFS51396.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL025PA1]
 gi|313814968|gb|EFS52682.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL059PA1]
 gi|313819446|gb|EFS57160.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL046PA2]
 gi|313821252|gb|EFS58966.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL036PA1]
 gi|313822293|gb|EFS60007.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL036PA2]
 gi|313826149|gb|EFS63863.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL063PA1]
 gi|313829362|gb|EFS67076.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL063PA2]
 gi|313831070|gb|EFS68784.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL007PA1]
 gi|313833200|gb|EFS70914.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL056PA1]
 gi|313838157|gb|EFS75871.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL086PA1]
 gi|314916746|gb|EFS80577.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL005PA4]
 gi|314919128|gb|EFS82959.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL050PA1]
 gi|314921208|gb|EFS85039.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL050PA3]
 gi|314925998|gb|EFS89829.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL036PA3]
 gi|314930364|gb|EFS94195.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL067PA1]
 gi|314956147|gb|EFT00543.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL027PA1]
 gi|314959680|gb|EFT03782.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL002PA1]
 gi|314962254|gb|EFT06355.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL002PA2]
 gi|314963232|gb|EFT07332.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL082PA1]
 gi|314969775|gb|EFT13873.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL037PA1]
 gi|314973946|gb|EFT18042.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL053PA1]
 gi|314976874|gb|EFT20969.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL045PA1]
 gi|314979339|gb|EFT23433.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL072PA2]
 gi|314984996|gb|EFT29088.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL005PA1]
 gi|314986329|gb|EFT30421.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL005PA2]
 gi|314988574|gb|EFT32665.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL005PA3]
 gi|315079691|gb|EFT51679.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL053PA2]
 gi|315081019|gb|EFT52995.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL078PA1]
 gi|315083918|gb|EFT55894.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL027PA2]
 gi|315085055|gb|EFT57031.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL002PA3]
 gi|315089484|gb|EFT61460.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL072PA1]
 gi|315097697|gb|EFT69673.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL038PA1]
 gi|315098096|gb|EFT70072.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL059PA2]
 gi|315102686|gb|EFT74662.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL046PA1]
 gi|315107934|gb|EFT79910.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL030PA1]
 gi|315108828|gb|EFT80804.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL030PA2]
 gi|327325717|gb|EGE67514.1| NADH-quinone oxidoreductase, I subunit [Propionibacterium acnes
           HL096PA3]
 gi|327330835|gb|EGE72580.1| NADH-quinone oxidoreductase, I subunit [Propionibacterium acnes
           HL096PA2]
 gi|327333130|gb|EGE74857.1| NADH-quinone oxidoreductase, I subunit [Propionibacterium acnes
           HL097PA1]
 gi|327442872|gb|EGE89526.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL043PA2]
 gi|327445264|gb|EGE91918.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL043PA1]
 gi|327447750|gb|EGE94404.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL013PA2]
 gi|327451639|gb|EGE98293.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL087PA3]
 gi|327452292|gb|EGE98946.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL083PA2]
 gi|327452509|gb|EGE99163.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL092PA1]
 gi|328752125|gb|EGF65741.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL025PA2]
 gi|328755069|gb|EGF68685.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL020PA1]
 gi|328757017|gb|EGF70633.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           HL087PA1]
 gi|328761553|gb|EGF75071.1| NADH-quinone oxidoreductase, I subunit [Propionibacterium acnes
           HL099PA1]
 gi|332676321|gb|AEE73137.1| NADH-quinone oxidoreductase subunit I [Propionibacterium acnes 266]
          Length = 198

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/134 (33%), Positives = 67/134 (50%), Gaps = 7/134 (5%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFE--KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP 74
              F +     F+   T  YP +  +    PR  G H L R+P+G E+C+ C+LC   CP
Sbjct: 4   WSGFGITFETMFRKSFTQGYPEKGKEKPMPPRMHGRHQLNRWPDGLEKCVGCELCAWACP 63

Query: 75  AQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           A AI +E        R   G R    Y+I+ ++CI CG+C EACP  A+    +F+ A  
Sbjct: 64  ADAIYVEGADNTDEERYSPGERYGRVYEINYLRCILCGMCIEACPTRALTMTNDFKMADT 123

Query: 130 TRQELYYDKERLLN 143
           +R +  + K+ LL 
Sbjct: 124 SRAKHIWTKDELLA 137


>gi|39937317|ref|NP_949593.1| NADH dehydrogenase subunit I [Rhodopseudomonas palustris CGA009]
 gi|81619360|sp|Q6N1Z5|NUOI2_RHOPA RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName:
           Full=NADH dehydrogenase I subunit I 2; AltName:
           Full=NDH-1 subunit I 2
 gi|39651175|emb|CAE29698.1| NADH-ubiquinone dehydrogenase chain I [Rhodopseudomonas palustris
           CGA009]
          Length = 173

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 46/131 (35%), Positives = 68/131 (51%), Gaps = 1/131 (0%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
           ++ A     R  F    T  YP +K    PR RG   L R P+G+ERC+AC LC  +CP 
Sbjct: 6   WLEALLRVGRKLFVKPETQLYPEQKPKLYPRARGRIVLTRDPDGQERCVACNLCATVCPV 65

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
             I + +     DG      + ++  +CI+CG C++ACP  AI   P++E +   R  L 
Sbjct: 66  GCIDL-AKAVADDGRWYPEYFRVNFARCIFCGFCEDACPTAAIQLTPDYELSEWRRDALV 124

Query: 136 YDKERLLNNGD 146
           Y+K  LL +G+
Sbjct: 125 YEKHDLLISGE 135


>gi|289425635|ref|ZP_06427407.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           SK187]
 gi|289153936|gb|EFD02629.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes
           SK187]
          Length = 199

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/134 (33%), Positives = 67/134 (50%), Gaps = 7/134 (5%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFE--KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP 74
              F +     F+   T  YP +  +    PR  G H L R+P+G E+C+ C+LC   CP
Sbjct: 5   WSGFGITFETMFRKSFTQGYPEKGKEKPMPPRMHGRHQLNRWPDGLEKCVGCELCAWACP 64

Query: 75  AQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           A AI +E        R   G R    Y+I+ ++CI CG+C EACP  A+    +F+ A  
Sbjct: 65  ADAIYVEGADNTDEERYSPGERYGRVYEINYLRCILCGMCIEACPTRALTMTNDFKMADT 124

Query: 130 TRQELYYDKERLLN 143
           +R +  + K+ LL 
Sbjct: 125 SRAKHIWTKDELLA 138


>gi|77463679|ref|YP_353183.1| NADH dehydrogenase subunit I [Rhodobacter sphaeroides 2.4.1]
 gi|221639523|ref|YP_002525785.1| NADH dehydrogenase subunit I [Rhodobacter sphaeroides KD131]
 gi|110287770|sp|Q3J1Q2|NUOI2_RHOS4 RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName:
           Full=NADH dehydrogenase I subunit I 2; AltName:
           Full=NDH-1 subunit I 2
 gi|77388097|gb|ABA79282.1| NADH-quinone oxidoreductase, chain I, ferredoxin [Rhodobacter
           sphaeroides 2.4.1]
 gi|221160304|gb|ACM01284.1| NADH-quinone oxidoreductase subunit I 2 [Rhodobacter sphaeroides
           KD131]
          Length = 164

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/134 (38%), Positives = 69/134 (51%), Gaps = 1/134 (0%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           +K  + +     R  F    T+ YP EK   +PR RG   L R P+G+ERC+AC LC A 
Sbjct: 1   MKGILDSILRVGRMIFAPTKTVQYPEEKLPLAPRTRGRIVLTRDPDGQERCVACNLCAAA 60

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           CP   I +        G      + I+  +CI+CG C+EACP  AI   P+ E A   R 
Sbjct: 61  CPVDCIDVVKAETPD-GRWYPESFRINFARCIFCGYCEEACPTSAIQLTPDVELADYRRG 119

Query: 133 ELYYDKERLLNNGD 146
            L Y+KE LL +G+
Sbjct: 120 FLQYEKEDLLISGE 133


>gi|316973508|gb|EFV57088.1| NADH-quinone oxidoreductase subunit I [Trichinella spiralis]
          Length = 165

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 87/143 (60%), Positives = 94/143 (65%), Gaps = 4/143 (2%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
                 ++FL E + A       F K   TINYPFEKG  SPRFRGEHALRRYP+GEERC
Sbjct: 27  LDRGFHWMFLSELIRALGHLFGSFLKEPATINYPFEKGPLSPRFRGEHALRRYPSGEERC 86

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           IACKLCEAICPAQAITIE+  R   G+RRT RYDIDM KCIYCGLCQEACPVDAI     
Sbjct: 87  IACKLCEAICPAQAITIEAEERPD-GSRRTTRYDIDMCKCIYCGLCQEACPVDAIKSN-- 143

Query: 124 FEFATETRQELYYDKERLLNNGD 146
              A   R  L Y+  R L   D
Sbjct: 144 -AVAVYKRMFLLYNYLRTLEKYD 165


>gi|126462511|ref|YP_001043625.1| NADH dehydrogenase subunit I [Rhodobacter sphaeroides ATCC 17029]
 gi|156632694|sp|A3PKI7|NUOI2_RHOS1 RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName:
           Full=NADH dehydrogenase I subunit I 2; AltName:
           Full=NDH-1 subunit I 2
 gi|126104175|gb|ABN76853.1| NADH-quinone oxidoreductase, chain I [Rhodobacter sphaeroides ATCC
           17029]
          Length = 164

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 51/134 (38%), Positives = 69/134 (51%), Gaps = 1/134 (0%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           +K  + +     R  F    T+ YP EK   +PR RG   L R P+G+ERC+AC LC A 
Sbjct: 1   MKGILDSILRVGRMIFAPTKTVQYPEEKLPLAPRTRGRIVLTRDPDGQERCVACNLCAAA 60

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           CP   I +        G      + I+  +CI+CG C+EACP  AI   P+ E A   R 
Sbjct: 61  CPVDCIDVVKAETPD-GRWYPESFRINFARCIFCGYCEEACPTSAIQLTPDVELADYRRG 119

Query: 133 ELYYDKERLLNNGD 146
            L Y+KE LL +G+
Sbjct: 120 FLQYEKEDLLISGE 133


>gi|94676609|ref|YP_588818.1| NADH dehydrogenase subunit I [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|110287758|sp|Q1LT96|NUOI_BAUCH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|94219759|gb|ABF13918.1| NADH-quinone oxidoreductase, chain I [Baumannia cicadellinicola
           str. Hc (Homalodisca coagulata)]
          Length = 180

 Score =  115 bits (287), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 48/130 (36%), Positives = 67/130 (51%), Gaps = 1/130 (0%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            + + ++     F  + T  YP      + RFRG   L   P+G ERC+AC LC   CP 
Sbjct: 13  ILRSIWMIGMQAFNKRETQMYPDIPIYQTSRFRGRIVLTCDPDGYERCVACNLCAVACPV 72

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
             I+++       G      + I+  +CI+CGLC+EACP  AI   P+FE A   RQ+L 
Sbjct: 73  DCISLQKTESKE-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDFEMAEFKRQDLV 131

Query: 136 YDKERLLNNG 145
           Y+KE LL  G
Sbjct: 132 YEKEDLLIRG 141


>gi|126640817|ref|YP_001083801.1| NADH dehydrogenase subunit I [Acinetobacter baumannii ATCC 17978]
 gi|213156543|ref|YP_002318204.1| NADH dehydrogenase I chain I 2Fe-2S ferredoxin-related
           [Acinetobacter baumannii AB0057]
 gi|215484512|ref|YP_002326747.1| NADH-quinone oxidoreductase subunit 9 [Acinetobacter baumannii
           AB307-0294]
 gi|213055703|gb|ACJ40605.1| NADH dehydrogenase I chain I 2Fe-2S ferredoxin-related
           [Acinetobacter baumannii AB0057]
 gi|213988464|gb|ACJ58763.1| NADH-quinone oxidoreductase subunit 9 [Acinetobacter baumannii
           AB307-0294]
 gi|322506935|gb|ADX02389.1| nuoI [Acinetobacter baumannii 1656-2]
 gi|323516802|gb|ADX91183.1| NADH dehydrogenase subunit I [Acinetobacter baumannii TCDC-AB0715]
          Length = 164

 Score =  115 bits (287), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 50/126 (39%), Positives = 71/126 (56%), Gaps = 3/126 (2%)

Query: 22  LCLRYFFKAKTTINYPFEKGS--TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79
           +   + F+ + TI YP         PR+RG   L R P+GEERC+AC LC   CP   I+
Sbjct: 1   MVFTHGFRKRDTILYPEVPAEEIVPPRYRGRIILTRDPDGEERCVACNLCAVACPVGCIS 60

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139
           ++   +  DG      + I+  +CI+CG+C+EACP  AI   P+FE     RQ+L Y+KE
Sbjct: 61  LQKAEK-EDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQLTPDFELGEYVRQDLVYEKE 119

Query: 140 RLLNNG 145
            LL +G
Sbjct: 120 NLLISG 125


>gi|332558535|ref|ZP_08412857.1| NADH dehydrogenase subunit I [Rhodobacter sphaeroides WS8N]
 gi|332276247|gb|EGJ21562.1| NADH dehydrogenase subunit I [Rhodobacter sphaeroides WS8N]
          Length = 164

 Score =  115 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 51/134 (38%), Positives = 69/134 (51%), Gaps = 1/134 (0%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           +K  + +     R  F    T+ YP EK   +PR RG   L R P+G+ERC+AC LC A 
Sbjct: 1   MKGILDSILRVGRMIFAPAKTVQYPEEKLPLAPRTRGRIVLTRDPDGQERCVACNLCAAA 60

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           CP   I +        G      + I+  +CI+CG C+EACP  AI   P+ E A   R 
Sbjct: 61  CPVDCIDVVKAETPD-GRWYPESFRINFARCIFCGYCEEACPTSAIQLTPDVELADYRRG 119

Query: 133 ELYYDKERLLNNGD 146
            L Y+KE LL +G+
Sbjct: 120 FLQYEKEDLLISGE 133


>gi|254283716|ref|ZP_04958684.1| NADH dehydrogenase i, i subunit [gamma proteobacterium NOR51-B]
 gi|219679919|gb|EED36268.1| NADH dehydrogenase i, i subunit [gamma proteobacterium NOR51-B]
          Length = 175

 Score =  115 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 49/126 (38%), Positives = 69/126 (54%), Gaps = 1/126 (0%)

Query: 20  FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79
            +  L++ F    T+ YP EK   +PR+RG   L   P+GEERC+AC LC   CP   I 
Sbjct: 12  MWTILQHTFTRSETVQYPEEKPYLAPRYRGRIVLTCDPDGEERCVACNLCAVACPVDCIA 71

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139
           ++   +  DG      + I+  +CI CG+C+EACP +AI   P+FE     RQ + Y+KE
Sbjct: 72  LQQATK-EDGRWYPEFFRINFSRCIMCGMCEEACPTNAIQLTPDFEMCEYDRQSMVYEKE 130

Query: 140 RLLNNG 145
            L   G
Sbjct: 131 HLQIAG 136


>gi|288817725|ref|YP_003432072.1| NADH dehydrogenase chain I [Hydrogenobacter thermophilus TK-6]
 gi|288787124|dbj|BAI68871.1| NADH dehydrogenase chain I [Hydrogenobacter thermophilus TK-6]
 gi|308751324|gb|ADO44807.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Hydrogenobacter thermophilus TK-6]
          Length = 207

 Score =  115 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 43/180 (23%), Positives = 77/180 (42%), Gaps = 23/180 (12%)

Query: 2   RIFRCNVSF---LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL----- 53
           ++F   +S+   +F  +F+    + +R+ F    T +YP+EK +   RFRG         
Sbjct: 4   KVFERQLSWLERIFFVDFIKGLSVTIRHAFSKTITTHYPYEKLTPPKRFRGFLGHKVVDG 63

Query: 54  ---------------RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
                               G  RC+ C LC+  CP   +    G +  +G R    +++
Sbjct: 64  NEPQPAFDEWVERFKIEVRPGRSRCVVCMLCKRACPVPQLFEIEGEKLPNGKRVVSIFNM 123

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158
           +++ C +CG C +ACPVD +      E A+ TR++   + E L   G  W++   +    
Sbjct: 124 NLMLCTFCGFCVDACPVDCLFNSDIHETASYTRKDAILNLEALEQIGRDWQARREKEPDR 183


>gi|146277735|ref|YP_001167894.1| NADH dehydrogenase subunit I [Rhodobacter sphaeroides ATCC 17025]
 gi|145555976|gb|ABP70589.1| NADH-quinone oxidoreductase, chain I [Rhodobacter sphaeroides ATCC
           17025]
          Length = 164

 Score =  115 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 50/134 (37%), Positives = 68/134 (50%), Gaps = 1/134 (0%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           +K  + +     R  F    T+ YP  K   +PR RG   L R P+G+ERC+AC LC A 
Sbjct: 1   MKGILDSILRVGRMVFAPTKTVEYPEVKLPLAPRTRGRIVLTRDPDGQERCVACNLCAAA 60

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           CP   I +        G      + I+  +CI+CG C+EACP  AI   P+ E A   R 
Sbjct: 61  CPVDCIDVVKAETPD-GRWYPESFRINFARCIFCGYCEEACPTSAIQLTPDVELADYRRG 119

Query: 133 ELYYDKERLLNNGD 146
            L Y+KE LL +G+
Sbjct: 120 SLQYEKEDLLISGE 133


>gi|150375766|ref|YP_001312362.1| NADH-quinone oxidoreductase subunit I [Sinorhizobium medicae
           WSM419]
 gi|150030313|gb|ABR62429.1| NADH-quinone oxidoreductase, chain I [Sinorhizobium medicae WSM419]
          Length = 211

 Score =  114 bits (286), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 48/139 (34%), Positives = 74/139 (53%), Gaps = 2/139 (1%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEERCI 64
             + + F  +      L   Y F    T+ YP  EK     R+RG H L+R   GE +C+
Sbjct: 33  RWIGWAFFADLANGLALTFGYMFSKPVTMQYPDKEKWLPYSRYRGHHFLKRDAEGEIKCV 92

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           AC+LC  ICP   I +        G RR  +++ID  +C++CGLC++ACP DAI  G  +
Sbjct: 93  ACELCAQICPCDCIEVVPYED-EKGNRRPAKFEIDTARCLFCGLCEDACPADAIALGQQY 151

Query: 125 EFATETRQELYYDKERLLN 143
           EF++ + ++L   ++ LL 
Sbjct: 152 EFSSFSSRDLVIGRDDLLA 170


>gi|116329922|ref|YP_799640.1| NADH dehydrogenase (ubiquinone), I chain [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
 gi|122282305|sp|Q04W38|NUOI_LEPBJ RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|116123611|gb|ABJ74882.1| NADH dehydrogenase (ubiquinone), I chain [Leptospira borgpetersenii
           serovar Hardjo-bovis JB197]
          Length = 175

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 51/145 (35%), Positives = 78/145 (53%), Gaps = 11/145 (7%)

Query: 11  LFLKEFVGAFFLCLRYF-----FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
            +        ++ L++F      +   TI YP +K   S RFRG H ++R   G ERC +
Sbjct: 21  FYFYSIGKGLWITLKHFIKAAILRRTVTIEYPEKKRKYSTRFRGMHTMKRDEQGRERCTS 80

Query: 66  CKLCEAICPAQAITIESGP------RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           C  C  ICPA AI IE+G         H   +   +++ID+++CI+CG+C+EACP  AI 
Sbjct: 81  CFCCMWICPADAIYIEAGEVVPEIQHLHPEDKYAKKFEIDLLRCIFCGMCEEACPKGAIY 140

Query: 120 EGPNFEFATETRQELYYDKERLLNN 144
                E AT++R++L   KER++  
Sbjct: 141 LDGPGEMATDSREDLILTKERMMQI 165


>gi|116329474|ref|YP_799194.1| NADH dehydrogenase (ubiquinone), I chain [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
 gi|122282746|sp|Q04XD4|NUOI_LEPBL RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|116122218|gb|ABJ80261.1| NADH dehydrogenase (ubiquinone), I chain [Leptospira borgpetersenii
           serovar Hardjo-bovis L550]
          Length = 175

 Score =  114 bits (286), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 51/145 (35%), Positives = 77/145 (53%), Gaps = 11/145 (7%)

Query: 11  LFLKEFVGAFFLCLRYF-----FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
            +        ++ L++F      +   TI YP +K   S RFRG H ++R   G ERC +
Sbjct: 21  FYFYSIGKGLWITLKHFIKAAILRRTVTIEYPEKKRKYSTRFRGMHTMKRDEQGRERCTS 80

Query: 66  CKLCEAICPAQAITIESGP------RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           C  C  ICPA AI IE+G         H   +   +++ID+++CI+CG+C+EACP  AI 
Sbjct: 81  CFCCMWICPADAIYIEAGEVVPEIQHLHPEDKYAKKFEIDLLRCIFCGMCEEACPKGAIY 140

Query: 120 EGPNFEFATETRQELYYDKERLLNN 144
                E AT+ R++L   KER++  
Sbjct: 141 LDGPGEMATDNREDLILTKERMMQI 165


>gi|163784657|ref|ZP_02179485.1| NADH dehydrogenase I chain I [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880075|gb|EDP73751.1| NADH dehydrogenase I chain I [Hydrogenivirga sp. 128-5-R1-1]
          Length = 203

 Score =  114 bits (285), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 47/157 (29%), Positives = 78/157 (49%), Gaps = 17/157 (10%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHA------------- 52
            N   +F  +F+    + ++ FF+   T  YP+EK +   RFRG HA             
Sbjct: 16  SNTERIFFIDFIKGMKITIKNFFRKTITTRYPYEKLTPPKRFRGTHAHRVRDGKEPPSFN 75

Query: 53  ----LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
                     GE RC+AC +C+  CP  ++      +  +G +R  R+D++++ C+YCGL
Sbjct: 76  VLLQFMEIKEGESRCVACYMCQQACPVPSLFNIEAQQLPNGKKRVKRFDMNLLNCLYCGL 135

Query: 109 CQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNG 145
           C +ACPVD I+   N+E A+ TR++     + +   G
Sbjct: 136 CVDACPVDCIIMTDNYESASYTRKDCTIHIDDMSQRG 172


>gi|218459472|ref|ZP_03499563.1| NADH:ubiquinone oxidoreductase subunit 6 (chain I) [Rhizobium etli
           Kim 5]
          Length = 205

 Score =  114 bits (285), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 47/139 (33%), Positives = 73/139 (52%), Gaps = 2/139 (1%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEERCI 64
             + + F  +      L   Y F    T+ YP  EK     R+RG H L+R   GE +C+
Sbjct: 5   RWIGWAFFADLANGLALTFGYMFSKPVTMQYPDKEKWLPYSRYRGHHFLKRDEAGEIKCV 64

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           AC+LC  ICP   I +        G R   +++ID  +C++CGLC++ACP DAI  G  +
Sbjct: 65  ACELCARICPCDCIEVVPYED-EKGNRHPAKFEIDTARCLFCGLCEDACPADAIALGQQY 123

Query: 125 EFATETRQELYYDKERLLN 143
           EF++ + ++L   ++ LL 
Sbjct: 124 EFSSFSSRDLVIGRDDLLA 142


>gi|95928438|ref|ZP_01311186.1| NADH-quinone oxidoreductase, chain I [Desulfuromonas acetoxidans
           DSM 684]
 gi|95135709|gb|EAT17360.1| NADH-quinone oxidoreductase, chain I [Desulfuromonas acetoxidans
           DSM 684]
          Length = 131

 Score =  114 bits (284), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 53/133 (39%), Positives = 76/133 (57%), Gaps = 3/133 (2%)

Query: 12  FLKEFVGAFFLCLRYFF-KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70
            +KEF+    +  ++      TT++YP  K   S RFRG H L    N  E+C+AC LC 
Sbjct: 1   MIKEFIQGLSITAKHLLPGNSTTVDYPKVKLEPSDRFRGLHRLVPDHN-REKCVACYLCP 59

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
            +CPA+ IT+E+     +G +    Y IDM++CI+CG C EACPV+AI     +E A   
Sbjct: 60  TVCPAKCITVEAAED-ENGVKYPTVYQIDMLRCIFCGYCVEACPVEAIEMTGEYELANYK 118

Query: 131 RQELYYDKERLLN 143
           R++  + KERLL 
Sbjct: 119 REDFCFTKERLLK 131


>gi|41582337|gb|AAS07951.1| NADH-quinone oxidoreductase, chain I [uncultured marine bacterium
           463]
          Length = 175

 Score =  114 bits (284), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 49/129 (37%), Positives = 71/129 (55%), Gaps = 1/129 (0%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V   +  L++ F    T+ YP +K   +PR+RG   L + P+GEERC+AC LC   CP  
Sbjct: 9   VRTIWTILQHSFTRAETVQYPEQKPYLAPRYRGRIVLTKDPDGEERCVACNLCAVACPVD 68

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
            I ++ G +  DG      + I+  +CI CG+C+EACP +AI   P+FE     R  + Y
Sbjct: 69  CIALQQGVK-EDGRWYPEFFRINFSRCIMCGMCEEACPTNAIQLTPDFEMCEYNRSSMVY 127

Query: 137 DKERLLNNG 145
           +KE L   G
Sbjct: 128 EKEHLQIEG 136


>gi|332883536|gb|EGK03819.1| NADH-quinone oxidoreductase subunit I [Dysgonomonas mossii DSM
           22836]
          Length = 177

 Score =  114 bits (284), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 47/153 (30%), Positives = 81/153 (52%), Gaps = 8/153 (5%)

Query: 7   NVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIAC 66
               ++    +    + +++FFK K T+ YP ++   SP +RG+H L R   G ERC AC
Sbjct: 22  FAEKIYFPAVIKGLIITIKHFFKKKATVQYPEQQREFSPVYRGQHVLMRDDQGRERCTAC 81

Query: 67  KLCEAICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            LC   CPA+AIT+ +  R           +    Y+I+M++CI+CG+C+EACP +AI  
Sbjct: 82  GLCALSCPAEAITMVAAERKKGEEHLYREEKYASEYEINMLRCIFCGICEEACPKEAIFL 141

Query: 121 GPNFEFATET--RQELYYDKERLLNNGDRWESE 151
             +         R++  Y K++L+ + +  ++ 
Sbjct: 142 TKSKLLVKPKLEREDFIYGKDKLVISVEDAKAR 174


>gi|15606570|ref|NP_213950.1| NADH dehydrogenase I chain I [Aquifex aeolicus VF5]
 gi|81669678|sp|O67386|NUOI2_AQUAE RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName:
           Full=NADH dehydrogenase I subunit I 2; AltName:
           Full=NDH-1 subunit I 2
 gi|2983791|gb|AAC07349.1| NADH dehydrogenase I chain I [Aquifex aeolicus VF5]
          Length = 208

 Score =  114 bits (284), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 43/173 (24%), Positives = 72/173 (41%), Gaps = 20/173 (11%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYP-------- 57
             +  +F  +F+    + L+   +   T +YP+EK +   RFRG  A +           
Sbjct: 11  SWLERIFFIDFIKGLRITLKNALRKTITTHYPYEKITPPKRFRGYFAHKVVDGTEPQPAF 70

Query: 58  ------------NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
                        G+ RC+ C  C+  CP   +    G +  +G R    ++++M+ C Y
Sbjct: 71  QEWVNRYNILVEYGKSRCVVCLRCKRACPVPQLFEIEGKKLPNGKRVVSVFNMNMLLCTY 130

Query: 106 CGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158
           CG C +ACPVD + +    E A+ TR++     E L   G  W+    R    
Sbjct: 131 CGFCVDACPVDCLYQTDIHENASYTRKDAVLTLEILEQIGRDWQRRREREPDR 183


>gi|307304402|ref|ZP_07584153.1| NADH-quinone oxidoreductase, chain I [Sinorhizobium meliloti
           BL225C]
 gi|307318109|ref|ZP_07597545.1| NADH-quinone oxidoreductase, chain I [Sinorhizobium meliloti AK83]
 gi|306896150|gb|EFN26900.1| NADH-quinone oxidoreductase, chain I [Sinorhizobium meliloti AK83]
 gi|306902604|gb|EFN33198.1| NADH-quinone oxidoreductase, chain I [Sinorhizobium meliloti
           BL225C]
          Length = 188

 Score =  114 bits (284), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 48/139 (34%), Positives = 75/139 (53%), Gaps = 2/139 (1%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEERCI 64
             + + F  +      L   Y F    T+ YP  EK     R+RG H L+R  +GE +C+
Sbjct: 10  RWIGWAFFADLANGLALTFGYMFSRPVTMQYPDKEKWLPYSRYRGHHFLKRDDDGEIKCV 69

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           AC+LC  ICP   I +        G RR  +++ID  +C++CGLC++ACP DAI  G  +
Sbjct: 70  ACELCARICPCDCIEVVPYED-EKGNRRPAKFEIDTARCLFCGLCEDACPADAIALGQQY 128

Query: 125 EFATETRQELYYDKERLLN 143
           EF++ + ++L   ++ LL 
Sbjct: 129 EFSSFSSRDLVIGRDDLLA 147


>gi|327398405|ref|YP_004339274.1| NAD(P)H-quinone oxidoreductase subunit I [Hippea maritima DSM
           10411]
 gi|327181034|gb|AEA33215.1| NAD(P)H-quinone oxidoreductase subunit I [Hippea maritima DSM
           10411]
          Length = 139

 Score =  114 bits (284), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 2/133 (1%)

Query: 11  LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPN-GEERCIACKLC 69
           +   +      + ++Y F    T  YP E+     R R  HAL ++ + G+ +CI C LC
Sbjct: 1   MLFNDLRKGLSVTIKYLFTRPVTCQYPNERLEVPERGRWLHALEKFEDSGKIKCIDCGLC 60

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           E +CP++ I I         T+    Y++D+ +C++CGLC E CP  A+     +E A  
Sbjct: 61  ERVCPSKCIKITPIENEDH-TKNAAEYELDLGRCLFCGLCVEVCPELALSMTDKYELAEY 119

Query: 130 TRQELYYDKERLL 142
            R++  Y KE+LL
Sbjct: 120 DREKFIYTKEQLL 132


>gi|254481086|ref|ZP_05094332.1| NADH-quinone oxidoreductase, chain I subfamily, putative [marine
           gamma proteobacterium HTCC2148]
 gi|214038881|gb|EEB79542.1| NADH-quinone oxidoreductase, chain I subfamily, putative [marine
           gamma proteobacterium HTCC2148]
          Length = 175

 Score =  114 bits (284), Expect = 6e-24,   Method: Composition-based stats.
 Identities = 49/129 (37%), Positives = 71/129 (55%), Gaps = 1/129 (0%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V   +  L++ F    T+ YP +K   +PR+RG   L + P+GEERC+AC LC   CP  
Sbjct: 9   VRTIWTILQHSFTRAETVQYPEQKPYLAPRYRGRIVLTKDPDGEERCVACNLCAVACPVD 68

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
            I ++ G +  DG      + I+  +CI CG+C+EACP +AI   P+FE     R  + Y
Sbjct: 69  CIALQQGVK-EDGRWYPEFFRINFSRCIMCGMCEEACPTNAIQLTPDFEMCEYNRSSMVY 127

Query: 137 DKERLLNNG 145
           +KE L   G
Sbjct: 128 EKEHLQIEG 136


>gi|24212861|ref|NP_710342.1| NADH dehydrogenase (ubiquinone) chain I [Leptospira interrogans
           serovar Lai str. 56601]
 gi|45656052|ref|YP_000138.1| NADH dehydrogenase II subunit [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|81472291|sp|Q8F9N0|NUOI_LEPIN RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|81699547|sp|Q72VZ9|NUOI_LEPIC RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|24193522|gb|AAN47360.1| NADH dehydrogenase (ubiquinone) chain I [Leptospira interrogans
           serovar Lai str. 56601]
 gi|45599285|gb|AAS68775.1| NADH dehydrogenase I I subunit [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 175

 Score =  113 bits (283), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 49/144 (34%), Positives = 76/144 (52%), Gaps = 11/144 (7%)

Query: 11  LFLKEFVGAFFLCLRYF-----FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
            +        ++ L++F      +   TI +P +K   S RFRG H ++R   G ERC +
Sbjct: 21  FYFYSIGKGLWITLKHFIKAAILRKAVTIEFPEKKRKYSTRFRGMHTMKRDEQGRERCTS 80

Query: 66  CKLCEAICPAQAITIESGP------RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           C  C  ICPA AI IE+          H   +   +++ID+++CI+CG+C+EACP  AI 
Sbjct: 81  CFCCMWICPADAIYIEAAEVTPEIQHLHPEDKYAKKFEIDLLRCIFCGMCEEACPKGAIY 140

Query: 120 EGPNFEFATETRQELYYDKERLLN 143
                E AT+ R++L   KER++ 
Sbjct: 141 LDGPGEMATDNREDLILTKERMMQ 164


>gi|317051063|ref|YP_004112179.1| NADH-quinone oxidoreductase subunit I [Desulfurispirillum indicum
           S5]
 gi|316946147|gb|ADU65623.1| NADH-quinone oxidoreductase, chain I [Desulfurispirillum indicum
           S5]
          Length = 173

 Score =  113 bits (283), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 52/141 (36%), Positives = 76/141 (53%), Gaps = 8/141 (5%)

Query: 11  LFLKEFVGAFFLCLRYFFKA------KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64
           L+L E +    + LR+F +           +YP +K    PR+RG H L    +G  +C+
Sbjct: 19  LYLPEIIKGMGITLRHFLRNLHDSKNIIVRDYPEQKVEIPPRWRGRHRLTTREDGSIKCV 78

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRT-VRYDIDMIKCIYCGLCQEACPVDAIVE-GP 122
           AC +C   CPA+ I IE+  R    T +   R+DID+++CIYCG C EACPVDAI     
Sbjct: 79  ACFMCATNCPAKCIFIEATEREDGVTEKMPARFDIDLLECIYCGFCVEACPVDAIRMDTG 138

Query: 123 NFEFATETRQELYYDKERLLN 143
            F   T+ R ++   KE+L+ 
Sbjct: 139 IFSVVTDNRADMVVTKEQLMQ 159


>gi|322378675|ref|ZP_08053108.1| NADH-quinone oxidoreductase subunit I (NuoI) [Helicobacter suis
           HS1]
 gi|322379666|ref|ZP_08053984.1| NADH dehydrogenase subunit I [Helicobacter suis HS5]
 gi|321147902|gb|EFX42484.1| NADH dehydrogenase subunit I [Helicobacter suis HS5]
 gi|321148892|gb|EFX43359.1| NADH-quinone oxidoreductase subunit I (NuoI) [Helicobacter suis
           HS1]
          Length = 218

 Score =  113 bits (283), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 48/129 (37%), Positives = 65/129 (50%), Gaps = 2/129 (1%)

Query: 7   NVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEERCIA 65
            +   F  +      L ++ FF    TI+YP E    SPR+R  H L R   +G ERCI 
Sbjct: 27  TLKSSFGLDLFKGLGLTIKEFFSKDVTIHYPMEVLPLSPRYRAVHHLQRLLDSGNERCIG 86

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           C LCE IC +  I I +     +  +    Y I++ +CIYCGLC E CP  AIV G  FE
Sbjct: 87  CGLCEKICTSNCIRIITHKAPDE-RKYIDSYTINLGRCIYCGLCAEVCPELAIVMGQRFE 145

Query: 126 FATETRQEL 134
            ++  R + 
Sbjct: 146 NSSVQRSQF 154


>gi|10945077|emb|CAC14151.1| putative NADH-ubiquinone oxidoreductase subunit [Sinorhizobium
           meliloti]
          Length = 210

 Score =  113 bits (282), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 48/139 (34%), Positives = 74/139 (53%), Gaps = 2/139 (1%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEERCI 64
             + + F  +      L   Y F    T+ YP  EK     R+RG H L+R   GE +C+
Sbjct: 32  RWIGWAFFADLANGLALTFGYMFSRPVTMQYPDKEKWLPYSRYRGHHFLKRDDEGEIKCV 91

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           AC+LC  ICP   I +        G RR  +++ID  +C++CGLC++ACP DAI  G  +
Sbjct: 92  ACELCARICPCDCIEVVPYED-EKGNRRPAKFEIDTARCLFCGLCEDACPADAIALGQQY 150

Query: 125 EFATETRQELYYDKERLLN 143
           EF++ + ++L   ++ LL 
Sbjct: 151 EFSSFSSRDLVIGRDDLLA 169


>gi|149061898|gb|EDM12321.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8 (predicted), isoform
           CRA_b [Rattus norvegicus]
          Length = 109

 Score =  113 bits (282), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 57/75 (76%), Positives = 64/75 (85%)

Query: 89  GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRW 148
           G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFEF+TET +EL Y+KE+LLNNGD+W
Sbjct: 35  GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTETHEELLYNKEKLLNNGDKW 94

Query: 149 ESEIVRNIVTDSPYR 163
           E+EI  NI  D  YR
Sbjct: 95  EAEIAANIQADYLYR 109


>gi|16263279|ref|NP_436072.1| NADH:ubiquinone oxidoreductase subunit 6 (chain I) [Sinorhizobium
           meliloti 1021]
 gi|81774724|sp|Q92YN8|NUOI2_RHIME RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName:
           Full=NADH dehydrogenase I subunit I 2; AltName:
           Full=NDH-1 subunit I 2
 gi|14523955|gb|AAK65484.1| NADH:ubiquinone oxidoreductase subunit 6 (chain I) [Sinorhizobium
           meliloti 1021]
          Length = 188

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 48/139 (34%), Positives = 74/139 (53%), Gaps = 2/139 (1%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEERCI 64
             + + F  +      L   Y F    T+ YP  EK     R+RG H L+R   GE +C+
Sbjct: 10  RWIGWAFFADLANGLALTFGYMFSRPVTMQYPDKEKWLPYSRYRGHHFLKRDDEGEIKCV 69

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           AC+LC  ICP   I +        G RR  +++ID  +C++CGLC++ACP DAI  G  +
Sbjct: 70  ACELCARICPCDCIEVVPYED-EKGNRRPAKFEIDTARCLFCGLCEDACPADAIALGQQY 128

Query: 125 EFATETRQELYYDKERLLN 143
           EF++ + ++L   ++ LL 
Sbjct: 129 EFSSFSSRDLVIGRDDLLA 147


>gi|188996811|ref|YP_001931062.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931878|gb|ACD66508.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 200

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 39/165 (23%), Positives = 75/165 (45%), Gaps = 17/165 (10%)

Query: 11  LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHA-----------------L 53
           +F  +F+    +  +   +   T  YPFEK +   RFRG HA                  
Sbjct: 18  IFFIDFMKGLKVTFKNLLQKTITTKYPFEKLTPPKRFRGVHAHRVKDGNEPPSFSVLEKF 77

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                GE RC+AC +C+  CP  ++ +    +  +G ++  +++++++ C+YCGLC +AC
Sbjct: 78  MDIETGESRCVACYMCQQACPMPSLFVIEAEQLPNGKKKVKKFEMNLLNCLYCGLCVDAC 137

Query: 114 PVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158
           PV+ ++    +E A   R+      E +   G  ++   ++    
Sbjct: 138 PVNCLIMTDIYEMAQYQRKNCVIHMEDMSERGKDFDRRRLKEPDR 182


>gi|183222747|ref|YP_001840743.1| NADH-quinone oxidoreductase chain I [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189912779|ref|YP_001964334.1| NADH dehydrogenase subunit I [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|226737397|sp|B0SHV5|NUOI_LEPBA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|226737398|sp|B0SRH5|NUOI_LEPBP RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|167777455|gb|ABZ95756.1| NADH dehydrogenase (ubiquinone), I chain [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167781169|gb|ABZ99467.1| NADH-quinone oxidoreductase chain I [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 175

 Score =  113 bits (282), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 51/144 (35%), Positives = 78/144 (54%), Gaps = 11/144 (7%)

Query: 11  LFLKEFVGAFFLCLRYF-----FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
            +        ++ L++F     F  + TI YP +K   S RFRG H+++R   G ERC A
Sbjct: 21  FYFWSIGKGLWITLKHFVKVAFFNKQVTIEYPDKKRQYSTRFRGMHSMKRDEQGRERCTA 80

Query: 66  CKLCEAICPAQAITIESGP------RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           C  C  ICPA AI IE+          H   +   +++I++++CI+CGLC+EACP  AI 
Sbjct: 81  CFCCMWICPANAIHIEAAEVTAERQHLHPEDKYAKKFEINLLRCIFCGLCEEACPKGAIY 140

Query: 120 EGPNFEFATETRQELYYDKERLLN 143
                E A + R++L+  KER++ 
Sbjct: 141 LDGTGEMAADNREDLFLTKERMME 164


>gi|297181764|gb|ADI17945.1| formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
           kd subunit (chain i) [uncultured Desulfobacterales
           bacterium HF0200_07G10]
          Length = 189

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 51/171 (29%), Positives = 77/171 (45%), Gaps = 23/171 (13%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFF----------------KAKTTINYPFEKGSTS 44
           M  +  +    ++ E +   +L  R FF                +   T+ YP EK    
Sbjct: 11  MTWWERS----YIPEILKGMWLTSRRFFHNLFGFIPFFLGTEKDRRIMTVYYPEEKIEYP 66

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP---RCHDGTRRTVRYDIDMI 101
             +RG   L +  +G+  C+AC LCE  CPA  I IE G    + +   R    +DID  
Sbjct: 67  VAYRGRPVLAQNEDGQPACVACGLCEIACPAYCIHIEPGENSGKQNQYERWPDVFDIDYA 126

Query: 102 KCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEI 152
            CI+CG C+EACP +AI    + E +   R+++ Y KE+LL      +  I
Sbjct: 127 ICIFCGNCEEACPEEAIFMSDDCEISMLDRKKMLYTKEQLLTPVADLQKRI 177


>gi|224437351|ref|ZP_03658323.1| NADH dehydrogenase subunit I [Helicobacter cinaedi CCUG 18818]
 gi|313143814|ref|ZP_07806007.1| NADH-quinone oxidoreductase subunit I [Helicobacter cinaedi CCUG
           18818]
 gi|313128845|gb|EFR46462.1| NADH-quinone oxidoreductase subunit I [Helicobacter cinaedi CCUG
           18818]
          Length = 234

 Score =  112 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 51/136 (37%), Positives = 66/136 (48%), Gaps = 2/136 (1%)

Query: 7   NVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEERCIA 65
                F  + +      L  FF    T+ YP E    SPR+R  H L R   +  ERCI 
Sbjct: 26  TFKTSFSLDLLSGLKTALGAFFSPNVTVQYPLESNPLSPRYRAIHKLQRLLESENERCIG 85

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           C LCE IC +  I I +  R  DG ++ + Y I+  +CIYCGLC E CP  AI+ G  FE
Sbjct: 86  CGLCEKICTSNCIRIITD-RGEDGRKKILDYSINFGRCIYCGLCAEVCPELAIIHGKGFE 144

Query: 126 FATETRQELYYDKERL 141
            A+  R    +  E L
Sbjct: 145 NASVQRAHFGFKPELL 160


>gi|225849707|ref|YP_002729941.1| NADH-quinone oxidoreductase subunit i 2 (nadhdehydrogenase i
           subunit i 2) (ndh-1 subunit i 2) [Persephonella marina
           EX-H1]
 gi|225645452|gb|ACO03638.1| NADH-quinone oxidoreductase subunit i 2 (nadhdehydrogenase i
           subunit i 2) (ndh-1 subunit i 2) [Persephonella marina
           EX-H1]
          Length = 233

 Score =  112 bits (280), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 49/185 (26%), Positives = 79/185 (42%), Gaps = 27/185 (14%)

Query: 5   RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRR--------- 55
           +  V  +F  +F       +++ F+   T+++P+E    +PRFRG H LR          
Sbjct: 15  QSIVEKIFFLDFAKGLATTIKHLFRKVITVDFPYEVVVPAPRFRGVHGLRNVDGTELPDF 74

Query: 56  -----------YPNGEERCIACKLCEAICPAQAITIES-------GPRCHDGTRRTVRYD 97
                         GE RCI CK C+A CP   I               H G +   ++D
Sbjct: 75  DAWVKKLKIKPPEMGETRCIGCKFCQAACPVPEIFTIKTEKLDVPEDHPHHGLKVVSQFD 134

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIV 157
           +D+ KC++CGLC  ACP   I+    ++ ++ TR+    DKE+L    D + S       
Sbjct: 135 MDLGKCMFCGLCTLACPTACIIHTDIYDLSSYTRRGWVLDKEKLSKIADDFVSRRREEKF 194

Query: 158 TDSPY 162
            +  +
Sbjct: 195 DEHSF 199


>gi|33519937|ref|NP_878769.1| NADH dehydrogenase subunit I [Candidatus Blochmannia floridanus]
 gi|81666916|sp|Q7VRV9|NUOI_BLOFL RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|33504283|emb|CAD83175.1| NADH dehydrogenase I chain I [Candidatus Blochmannia floridanus]
          Length = 181

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 44/145 (30%), Positives = 69/145 (47%), Gaps = 4/145 (2%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M++    ++ +       + ++     F  + T  YP      S R+RG   L R   G 
Sbjct: 2   MKLKEFFINII---SIFRSVYMVGMQAFSKRETYMYPDVACKLSSRYRGRIVLTRDSAGH 58

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERC+AC LC   CP   I+++       G      + I+  +CI+CG+C+EACP  AI  
Sbjct: 59  ERCVACNLCAVSCPVGCISLKKSENSE-GRWYPEFFRINFSRCIFCGMCEEACPTAAIQL 117

Query: 121 GPNFEFATETRQELYYDKERLLNNG 145
             +FE +   R +L Y+K  LL +G
Sbjct: 118 ISDFEMSDYKRSDLVYEKSDLLISG 142


>gi|188996567|ref|YP_001930818.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931634|gb|ACD66264.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 230

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 46/180 (25%), Positives = 80/180 (44%), Gaps = 27/180 (15%)

Query: 8   VSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALR------------- 54
           V  +F  +F+      +++ +K   T+++P+E  +  PRFRG H LR             
Sbjct: 14  VEKIFFLDFIKGLKTTIKHLWKKVITVDFPYEVVTPPPRFRGIHGLRTVDGTENPEFDSW 73

Query: 55  -------RYPNGEERCIACKLCEAICPAQAITIE-------SGPRCHDGTRRTVRYDIDM 100
                      GE RCIACK C+A CP   +               H G +    +++D+
Sbjct: 74  VKRLKIKPPEPGETRCIACKFCQAACPVPELFDIQSEKLDVPEDHPHYGLKVMTVFNMDL 133

Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDS 160
            KC +CGLC +ACP D I+    ++ ++ TR+    DK++L    + + +   +    + 
Sbjct: 134 SKCTFCGLCTQACPTDCIIMTDIYDLSSYTRKSWVLDKDKLTQIANDFVARRGKEKFNEK 193


>gi|301061344|ref|ZP_07202126.1| NADH-quinone oxidoreductase, chain I [delta proteobacterium NaphS2]
 gi|300444663|gb|EFK08646.1| NADH-quinone oxidoreductase, chain I [delta proteobacterium NaphS2]
          Length = 299

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 46/123 (37%), Positives = 57/123 (46%), Gaps = 1/123 (0%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
                      L + FK   T  YP  K     R R    L R P GEERC+AC LC A 
Sbjct: 16  FSGLARGLGTTLIHLFKKNVTEEYPEYKRPLFERTRARIILTRDPEGEERCVACYLCAAA 75

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           CP   I++    R  DG R    + I+  +CIYCGLC+EACP  AI    ++EF  +   
Sbjct: 76  CPVSCISMGGAER-EDGRRWATWFRINFARCIYCGLCEEACPTLAIQLTAHYEFCDDDIL 134

Query: 133 ELY 135
            L 
Sbjct: 135 NLV 137


>gi|116515045|ref|YP_802674.1| NADH dehydrogenase I chain I [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|122285559|sp|Q057W8|NUOI_BUCCC RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|116256899|gb|ABJ90581.1| NADH dehydrogenase I chain I [Buchnera aphidicola str. Cc (Cinara
           cedri)]
          Length = 181

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 51/140 (36%), Positives = 74/140 (52%), Gaps = 2/140 (1%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
            N+   FL +      +     F  + T  YP E  + S R+RG   L R  NG ERC+A
Sbjct: 4   KNIFLGFLSQIRSILMI-FSNIFSFRETRLYPDEPLNLSLRYRGRIILTRNSNGSERCVA 62

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           C LC A+CP   I+++      +G      + I++ +CI+CGLC+EACP  AI   P+ E
Sbjct: 63  CNLCSAVCPVNCISLKKSEE-KNGRWYAKSFQINLSRCIFCGLCEEACPTMAIQLTPDIE 121

Query: 126 FATETRQELYYDKERLLNNG 145
            +   R+EL Y K+ LL +G
Sbjct: 122 LSEFKRKELLYKKKNLLFSG 141


>gi|225629812|ref|ZP_03787741.1| NADH dehydrogenase I, I subunit [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225591335|gb|EEH12446.1| NADH dehydrogenase I, I subunit [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 105

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 76/105 (72%), Positives = 85/105 (80%), Gaps = 1/105 (0%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           NGE+ CIACKLCE ICPAQAI IE+  R  DG+RRT RYDIDM KCIYCGLCQEACPVDA
Sbjct: 1   NGEDECIACKLCEVICPAQAIVIEAEER-EDGSRRTTRYDIDMTKCIYCGLCQEACPVDA 59

Query: 118 IVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPY 162
           IVEGPNFEFATETR+EL Y+KE+LL NG+ WE  I   +  + PY
Sbjct: 60  IVEGPNFEFATETREELMYNKEKLLRNGEVWEDAIALRLKKNRPY 104


>gi|315453245|ref|YP_004073515.1| NADH-quinone oxidoreductase subunit I [Helicobacter felis ATCC
           49179]
 gi|315132297|emb|CBY82925.1| NADH-quinone oxidoreductase subunit I [Helicobacter felis ATCC
           49179]
          Length = 207

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/129 (38%), Positives = 66/129 (51%), Gaps = 2/129 (1%)

Query: 7   NVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEERCIA 65
            +   F  E      L ++ FF  + TI+YP E    SPR+R  H L R   +G ERCI 
Sbjct: 20  TLKTSFGLELFKGLGLTIKEFFSKEVTIHYPMEVLPLSPRYRAVHHLQRLLESGNERCIG 79

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           C LCE IC +  I I +     D  +    Y I++ +CIYCGLC E CP  AIV G  FE
Sbjct: 80  CGLCEKICTSNCIRIITHK-GEDERKHIDSYTINLGRCIYCGLCAEVCPELAIVMGQRFE 138

Query: 126 FATETRQEL 134
            ++  R + 
Sbjct: 139 NSSVQRSQF 147


>gi|195953134|ref|YP_002121424.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Hydrogenobaculum sp. Y04AAS1]
 gi|195932746|gb|ACG57446.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Hydrogenobaculum sp. Y04AAS1]
          Length = 208

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 38/165 (23%), Positives = 73/165 (44%), Gaps = 20/165 (12%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL------------ 53
             +  +   +F+    + ++  F    T +YP+EK +   RFRG                
Sbjct: 11  NFLETILFLDFIKGMSVTIKQAFTKTITTHYPYEKLTPPKRFRGFFGHKTVNGLEPQPAF 70

Query: 54  --------RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
                        G+ RC+ C LC+  CP   +    G +  +G +    ++++++ C +
Sbjct: 71  DEWVERMKIEPRPGKSRCVVCYLCKKACPVPDLFEIDGQKLENGKKVVSVFNMNLMLCTF 130

Query: 106 CGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWES 150
           CGLC +ACPVD + +    E A+ +R++   + E+L   G  W++
Sbjct: 131 CGLCVDACPVDCLFQSDIHETASFSRKDSILNLEKLEAIGRSWQN 175


>gi|27904653|ref|NP_777779.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|38372472|sp|Q89AT9|NUOI_BUCBP RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|27904050|gb|AAO26884.1| NADH dehydrogenase I chain I [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 180

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/145 (33%), Positives = 75/145 (51%), Gaps = 4/145 (2%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M +F+  ++       + + +L     F  + T  YP E  S S R+RG   L R   G+
Sbjct: 1   MILFKFFLACF---SQIKSVWLTFINIFSKRETRMYPEESLSLSSRYRGRIILSRNSFGK 57

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERC+AC LC  +CP   I++       +       + I++ +CI+CGLC+EACP  AI  
Sbjct: 58  ERCVACGLCSVVCPVSCISL-KKSTLKNNKWYPKFFRINLSRCIFCGLCEEACPTLAIQL 116

Query: 121 GPNFEFATETRQELYYDKERLLNNG 145
             + E +   RQ+L Y+K+ LL +G
Sbjct: 117 ISDVELSEYKRQDLVYEKDDLLISG 141


>gi|328952913|ref|YP_004370247.1| NAD(P)H-quinone oxidoreductase subunit I [Desulfobacca acetoxidans
           DSM 11109]
 gi|328453237|gb|AEB09066.1| NAD(P)H-quinone oxidoreductase subunit I [Desulfobacca acetoxidans
           DSM 11109]
          Length = 177

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 42/138 (30%), Positives = 63/138 (45%), Gaps = 3/138 (2%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPN-G 59
           M   +  V+       +    + +RYF K   T+ YP EK + SPR+RG          G
Sbjct: 2   MAYVKETVNGF--ISLLAGLAVTIRYFVKPIVTVQYPREKLTLSPRYRGHIEFIIDEETG 59

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
             RC AC+ C   CP++ IT+          +R V Y +D   C  CGLC E CP +A+ 
Sbjct: 60  SHRCTACENCMRTCPSKVITVTGVKVAGSKKKRAVTYQLDYSLCSLCGLCVEVCPTNALK 119

Query: 120 EGPNFEFATETRQELYYD 137
               +  A  +R+++  D
Sbjct: 120 FSDEYRLAGYSRKDMVID 137


>gi|115378570|ref|ZP_01465725.1| NADH-quinone oxidoreductase chain i [Stigmatella aurantiaca
           DW4/3-1]
 gi|310820736|ref|YP_003953094.1| NADH-quinone oxidoreductase subunit i [Stigmatella aurantiaca
           DW4/3-1]
 gi|115364442|gb|EAU63522.1| NADH-quinone oxidoreductase chain i [Stigmatella aurantiaca
           DW4/3-1]
 gi|309393808|gb|ADO71267.1| NADH-quinone oxidoreductase subunit I [Stigmatella aurantiaca
           DW4/3-1]
          Length = 244

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 49/160 (30%), Positives = 72/160 (45%), Gaps = 28/160 (17%)

Query: 12  FLKEFVGAFFLCLRYFFKA-------------------KTTINYPFEKGSTSPRFRGEHA 52
           ++ E +    +  ++FF+                     TT++YP EK    P +RG H 
Sbjct: 18  YVPELLRGLAITTKHFFRNLFGTRDTNTEVVDRKGTSLVTTVSYPEEKPVYPPGYRGLHR 77

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG--------TRRTVRYDIDMIKCI 104
           L    +G+ RC+AC +C  ICPAQ I IE+G    +          +   ++ ID ++CI
Sbjct: 78  LVPREDGKPRCVACYMCATICPAQCIYIEAGEYAPESEESQSRVIEKYPTQFVIDELRCI 137

Query: 105 YCGLCQEACPVDAIVE-GPNFEFATETRQELYYDKERLLN 143
            CGLC EACP DAI             RQ   +D  +LL 
Sbjct: 138 VCGLCVEACPKDAIRMDTYEHTKPEYNRQGFVFDIPKLLK 177


>gi|171914649|ref|ZP_02930119.1| NADH dehydrogenase (ubiquinone), I chain [Verrucomicrobium spinosum
           DSM 4136]
          Length = 177

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 50/147 (34%), Positives = 72/147 (48%), Gaps = 12/147 (8%)

Query: 11  LFLKEFVGAFFLCLRYFF-----KAKTTINYPFEKGS--TSPRFRGEHALRRYPNGEERC 63
            F+        + L +       K K T+ YP EK        +RG  AL    +G ERC
Sbjct: 17  WFISTLAKGLLITLGHAIAILRGKKKVTMQYPEEKWDANLPDHYRGAPALVTDEHGRERC 76

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTR-----RTVRYDIDMIKCIYCGLCQEACPVDAI 118
           ++C+LCE ICP +AITI                R   ++IDMI+CIYCG+C+E CP  AI
Sbjct: 77  VSCQLCEFICPPRAITIIPEEIPSTDPWAKVEKRPRLFNIDMIRCIYCGMCEEVCPEQAI 136

Query: 119 VEGPNFEFATETRQELYYDKERLLNNG 145
               ++     +R E+ +DK++L   G
Sbjct: 137 FLRKDYAITGLSRAEMVHDKKKLYEIG 163


>gi|227822745|ref|YP_002826717.1| NADH-quinone oxidoreductase subunit I2 [Sinorhizobium fredii
           NGR234]
 gi|227341746|gb|ACP25964.1| NADH-quinone oxidoreductase subunit I2 [Sinorhizobium fredii
           NGR234]
          Length = 188

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 48/142 (33%), Positives = 74/142 (52%), Gaps = 2/142 (1%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEE 61
                + + F  +      L   Y F    T+ YP  EK     R+RG H L+R   GE 
Sbjct: 7   TIGTWIGWTFFADLATGLALTFGYMFSKTVTMQYPDKEKWLPYSRYRGHHFLKRDEEGEI 66

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           +C+AC+LC  ICP   I +        G RR  +++ID  +C++CGLC++ACP DAI  G
Sbjct: 67  KCVACELCARICPCYCIEVVPYED-EKGNRRPAKFEIDTARCLFCGLCEDACPADAIALG 125

Query: 122 PNFEFATETRQELYYDKERLLN 143
             +EF++ + ++L   ++ LL 
Sbjct: 126 QQYEFSSFSSRDLVIGRDDLLA 147


>gi|154174565|ref|YP_001407454.1| NADH dehydrogenase subunit I [Campylobacter curvus 525.92]
 gi|112803235|gb|EAU00579.1| NADH-quinone oxidoreductase subunit i (nadhdehydrogenase i subunit
           i) (ndh-1 subunit i) [Campylobacter curvus 525.92]
          Length = 231

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 51/149 (34%), Positives = 77/149 (51%), Gaps = 3/149 (2%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYF-FKAKTTINYPFEKGSTSPRFRGEHALRRY-PNGEE 61
           F+  +S  F  E     ++ LR   F    T+ YP +K     R+RG H L R+  +  E
Sbjct: 22  FKRFISRTFKSELFTGLWVVLREMLFTKSHTLKYPLQKIELDARYRGVHRLMRFIESENE 81

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCI C LCE IC +  I +++     +G + T++Y I++ +C+YCG C + CP  AIV G
Sbjct: 82  RCIGCGLCEKICVSNCIAMQTALD-ENGRKATLKYSINLGRCVYCGFCADVCPELAIVHG 140

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWES 150
             +EFA+E R       + L  + D  E 
Sbjct: 141 DRYEFASEQRAYFGMKDDFLTKDKDLSEQ 169


>gi|154508645|ref|ZP_02044287.1| hypothetical protein ACTODO_01146 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798279|gb|EDN80699.1| hypothetical protein ACTODO_01146 [Actinomyces odontolyticus ATCC
           17982]
          Length = 151

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 46/125 (36%), Positives = 66/125 (52%), Gaps = 5/125 (4%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           +  + + +  FF+   T  YP E     PRF G H L RY +G E+C+ C+LC   CPA 
Sbjct: 27  MAGYGVTMASFFRPTVTEQYPREPARVMPRFHGRHQLNRYDDGLEKCVGCELCAWACPAD 86

Query: 77  AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           AI +E        +   G R    Y I+ ++CI+CG+C EACP  A+    +FE A  TR
Sbjct: 87  AIFVEAASNTPEEQYSAGERYGRVYQINYLRCIFCGMCIEACPTRALTMTNDFEIAKYTR 146

Query: 132 QELYY 136
           ++  Y
Sbjct: 147 EDDIY 151


>gi|95928465|ref|ZP_01311213.1| 4Fe-4S ferredoxin, iron-sulfur binding [Desulfuromonas acetoxidans
           DSM 684]
 gi|95135736|gb|EAT17387.1| 4Fe-4S ferredoxin, iron-sulfur binding [Desulfuromonas acetoxidans
           DSM 684]
          Length = 146

 Score =  111 bits (277), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 1/131 (0%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPN-GEERCIACKLCEAI 72
              +    + L+  F    T +YP +K   +P +RG   L +    G  +CI C  C   
Sbjct: 13  WSLIVGLKVTLKALFSPTVTTHYPRQKIEVTPNYRGHIDLVKDSESGSHKCITCGSCMRE 72

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           CP+  I ++   R     +   ++ +D  KC  CG C E CP DA+     +E A   R+
Sbjct: 73  CPSDCIVVDGEKREGVKGKVLTKFTLDFTKCSLCGACVEVCPTDALDYSNEYELAGFKRE 132

Query: 133 ELYYDKERLLN 143
           + +YD  + L 
Sbjct: 133 DFHYDILKRLE 143


>gi|295697740|ref|YP_003590978.1| NADH-quinone oxidoreductase, chain I [Bacillus tusciae DSM 2912]
 gi|295413342|gb|ADG07834.1| NADH-quinone oxidoreductase, chain I [Bacillus tusciae DSM 2912]
          Length = 154

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 48/136 (35%), Positives = 61/136 (44%), Gaps = 6/136 (4%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           +  F+    + +    K K T+ YP  +     RFRG H L       ERCI C  C  I
Sbjct: 1   MFGFLKGLAVTISQLPKKKVTLQYPDVRPQWPERFRGIHQL-----SVERCIVCGQCARI 55

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           CP   I++ SG R  D       +DI    CI C LC E CP +AI     FE A  +R 
Sbjct: 56  CPTSCISL-SGTRGEDRKLHLDTFDISFEICILCDLCTEVCPTEAIKMTDEFELAAYSRD 114

Query: 133 ELYYDKERLLNNGDRW 148
           +LY + E L  N  R 
Sbjct: 115 QLYKNIEWLHENYVRH 130


>gi|256390059|ref|YP_003111623.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Catenulispora acidiphila DSM 44928]
 gi|256356285|gb|ACU69782.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Catenulispora
           acidiphila DSM 44928]
          Length = 531

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 47/135 (34%), Positives = 59/135 (43%), Gaps = 14/135 (10%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                   L+       T  YP  K    PR RG  AL      EE C +C LC   CP 
Sbjct: 42  LAKGLATTLKTMTHRSVTAQYPDVKPELPPRSRGVIALL-----EENCTSCMLCARECPD 96

Query: 76  QAITIESG----PRCHDGTRRTVR-----YDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
             I I+S     P    G R   R     + ID   C+YCG+C EACP DA+   P FE+
Sbjct: 97  WCIYIDSHKEVVPATEPGQRDRTRNVLDRFAIDYSLCMYCGICIEACPFDALFWSPEFEY 156

Query: 127 ATETRQELYYDKERL 141
           A     +L ++K+RL
Sbjct: 157 AEFDIVDLLHEKDRL 171


>gi|154291493|ref|XP_001546329.1| hypothetical protein BC1G_15267 [Botryotinia fuckeliana B05.10]
 gi|150846765|gb|EDN21958.1| hypothetical protein BC1G_15267 [Botryotinia fuckeliana B05.10]
          Length = 271

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 65/156 (41%), Positives = 80/156 (51%), Gaps = 32/156 (20%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
                   +  + E     ++ L  +F+   TI YPFEK                     
Sbjct: 69  STMDKAGKYFLMSELFRGMYVVLEQYFRPPYTIYYPFEKI-------------------- 108

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
                      CPAQAITIE+  R  DG+RRT RYDIDM KCIYCG CQE+CPVDAIVE 
Sbjct: 109 -----------CPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQESCPVDAIVES 156

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIV 157
           PN E+ATETR+EL Y+KE+L      W S ++  I 
Sbjct: 157 PNAEYATETREELLYNKEKLFGCEVDWSSTLLDEIA 192


>gi|262197692|ref|YP_003268901.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haliangium
           ochraceum DSM 14365]
 gi|262081039|gb|ACY17008.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haliangium
           ochraceum DSM 14365]
          Length = 204

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 48/147 (32%), Positives = 69/147 (46%), Gaps = 11/147 (7%)

Query: 12  FLKEFVGAFFLCLRYFFKAKT---------TINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           FL   +    + L++F K            T++YP EK     R RG H L +  +G  R
Sbjct: 42  FLPATIKGLGITLKHFAKNVFRGRGKAYIETLSYPEEKEPYPERNRGLHRLMQREDGAAR 101

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGT-RRTVRYDIDMIKCIYCGLCQEACPVDAIVE- 120
           C+AC  C  +CPA  ITI        G  +    ++ID ++C+ CGLC E+CP DAI   
Sbjct: 102 CVACMCCPTVCPANCITIIPAETDDQGIEKYPAVFEIDELRCVVCGLCVESCPCDAIRMD 161

Query: 121 GPNFEFATETRQELYYDKERLLNNGDR 147
                   E R +    K++LL+ G R
Sbjct: 162 TGIHAPPVEERGDGIMVKDQLLDLGIR 188


>gi|225848100|ref|YP_002728263.1| NADH-quinone oxidoreductase subunit iota [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225644414|gb|ACN99464.1| NADH-quinone oxidoreductase subunit i 2 (nadhdehydrogenase i
           subunit i 2) (ndh-1 subunit i 2) [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 230

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 27/180 (15%)

Query: 8   VSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALR------------- 54
           V  +F  +F+      +++ +K   T+++P+E  +  PRFRG H LR             
Sbjct: 14  VEKIFFLDFIKGLKTTIKHLWKKVITVDFPYEVVTPPPRFRGVHGLRTVDGTENPEFDSW 73

Query: 55  -------RYPNGEERCIACKLCEAICPAQAITIE-------SGPRCHDGTRRTVRYDIDM 100
                      GE RCIACK C+A CP   +               H G +    +++D+
Sbjct: 74  VKRLKIKPPEPGETRCIACKFCQAACPVPELFDIQSEKLDVPEGHPHYGLKVMTVFNMDL 133

Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDS 160
            KC +CGLC +ACP D I+    ++ ++ TR+    DK+ L    + + +   +    + 
Sbjct: 134 SKCTFCGLCTQACPTDCIIMTDIYDLSSYTRRSWVLDKDMLTQIANDFVARRGKEKFDEK 193


>gi|226227060|ref|YP_002761166.1| NADH-quinone oxidoreductase chain I [Gemmatimonas aurantiaca T-27]
 gi|226090251|dbj|BAH38696.1| NADH-quinone oxidoreductase chain I [Gemmatimonas aurantiaca T-27]
          Length = 151

 Score =  110 bits (276), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 46/133 (34%), Positives = 69/133 (51%), Gaps = 2/133 (1%)

Query: 12  FLKEFVGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70
           +++  +       ++     K T+ YP  K   SPR+RG H +    +G+ +C+AC LC 
Sbjct: 3   YIRSTLAGMATTFKHLVDPHKVTMEYPETKWDLSPRWRGTHRMLTTEDGKAKCVACGLCP 62

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
            +CPA  I +  G     G R  + ++ID  +CI+CG CQE CP +AI  G ++E A   
Sbjct: 63  TVCPANCIKLTPGED-EQGNRYPLVFEIDEFRCIFCGYCQEVCPEEAIHLGRHYENAEYD 121

Query: 131 RQELYYDKERLLN 143
           R    YD ERL  
Sbjct: 122 RASFVYDLERLTA 134


>gi|330860328|emb|CBX70641.1| NADH-quinone oxidoreductase subunit I [Yersinia enterocolitica
           W22703]
          Length = 137

 Score =  110 bits (276), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 52/136 (38%), Positives = 71/136 (52%), Gaps = 8/136 (5%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LKE V  F   +R       + F  + T  YP E     PR+RG   L R P+GEERC
Sbjct: 1   MTLKELVVGFGTQVRSLWMIGLHAFHKRETQMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AC LC   CP   I+++       G      + I+  +CI+CGLC+EACP  AI   P+
Sbjct: 61  VACNLCAVACPVGCISLQKAEHKD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119

Query: 124 FEFATETRQELYYDKE 139
           FE     RQ+L Y+K+
Sbjct: 120 FEMGEFKRQDLVYEKK 135


>gi|86359334|ref|YP_471226.1| NADH-ubiquinone oxidoreductase protein [Rhizobium etli CFN 42]
 gi|115502513|sp|Q2K3T7|NUOI2_RHIEC RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName:
           Full=NADH dehydrogenase I subunit I 2; AltName:
           Full=NDH-1 subunit I 2
 gi|86283436|gb|ABC92499.1| probable NADH-ubiquinone oxidoreductase protein [Rhizobium etli CFN
           42]
          Length = 188

 Score =  110 bits (276), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 48/138 (34%), Positives = 74/138 (53%), Gaps = 2/138 (1%)

Query: 7   NVSFLFLKEFVGAFFLCLRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEERCIA 65
            + + F  +   A  L   Y F +  T+ YP  EK     R+RG H L+R   GE +C+A
Sbjct: 11  WIGWTFFADLANALTLTFGYMFSSPVTMQYPDTEKWLPYSRYRGHHFLKRDEEGEIKCVA 70

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           C+LC  ICP   I +        G R   +++ID  +C++CGLC++ACP DAI  G  +E
Sbjct: 71  CELCARICPCDCIEVVPYED-EKGNRHPAKFEIDTARCLFCGLCEDACPADAIALGQQYE 129

Query: 126 FATETRQELYYDKERLLN 143
           F++ +  +L   ++ LL 
Sbjct: 130 FSSFSSADLVIGRDDLLA 147


>gi|289548985|ref|YP_003473973.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermocrinis
           albus DSM 14484]
 gi|289182602|gb|ADC89846.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermocrinis
           albus DSM 14484]
          Length = 208

 Score =  110 bits (276), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 20/165 (12%)

Query: 7   NVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL------------- 53
            +  +   +F+    + +R+ F+   T +YP+EK +   RFRG                 
Sbjct: 12  WLERILFLDFIRGLSITIRHAFRRTITTHYPYEKLTPPKRFRGFFGHKVVDGREPQPAFD 71

Query: 54  -------RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
                       G  RC+ C LC+  CP   +    G +  +G RR   ++++M+ C +C
Sbjct: 72  EWVERFKIEVVPGRSRCVVCLLCKRACPVPQLFEIEGEKLPNGKRRVSVFNMNMMLCTFC 131

Query: 107 GLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
           G C +ACPVD + +    E A+ +R++   D E L   G  W+  
Sbjct: 132 GFCVDACPVDCLFQSDIHETASYSRKDAVLDLETLERIGRDWQRR 176


>gi|15606521|ref|NP_213901.1| NADH dehydrogenase I chain I [Aquifex aeolicus VF5]
 gi|81343827|sp|O67337|NUOI1_AQUAE RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|2983739|gb|AAC07300.1| NADH dehydrogenase I chain I [Aquifex aeolicus VF5]
          Length = 201

 Score =  110 bits (276), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 39/167 (23%), Positives = 71/167 (42%), Gaps = 17/167 (10%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEH---------- 51
           + +   +  +   +F+    + L+   +   T  YP EK +   RFRG H          
Sbjct: 9   KDYLNILESILFIDFLKGLSVTLKNLLRRPITTEYPKEKLTPPKRFRGAHGHYVWDGTEP 68

Query: 52  -------ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
                      Y   + RC+AC +C+  CP   +      +  +G ++ VR+D++++ C+
Sbjct: 69  DSLKAIEKFMSYEKAKSRCVACYMCQTACPMPTLFRIEAVQLPNGKKKVVRFDMNLLNCL 128

Query: 105 YCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
           +CGLC +ACPV  +     FE A  +R+      E L      ++  
Sbjct: 129 FCGLCVDACPVGCLTMTDIFELANYSRRNEVLRMEDLEKFAIDFKQR 175


>gi|190893221|ref|YP_001979763.1| NADH-ubiquinone oxidoreductase [Rhizobium etli CIAT 652]
 gi|190698500|gb|ACE92585.1| probable NADH-ubiquinone oxidoreductase protein [Rhizobium etli
           CIAT 652]
          Length = 188

 Score =  110 bits (276), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 49/138 (35%), Positives = 74/138 (53%), Gaps = 2/138 (1%)

Query: 7   NVSFLFLKEFVGAFFLCLRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEERCIA 65
            + + F  +   A  L L Y F    T+ YP  EK     R+RG H L+R   GE +C+A
Sbjct: 11  WIGWTFFADLANALTLTLGYMFARPVTMQYPDREKWLPYSRYRGHHFLKRDEEGEIKCVA 70

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           C+LC  ICP   I +        G R   +++ID  +C++CGLC++ACP DAI  G  +E
Sbjct: 71  CELCARICPCDCIEVVPYED-EKGNRHPAKFEIDTARCLFCGLCEDACPADAIALGQQYE 129

Query: 126 FATETRQELYYDKERLLN 143
           F++ +  +L   ++ LL 
Sbjct: 130 FSSFSSADLVIGRDDLLA 147


>gi|225874992|ref|YP_002756451.1| NADH dehydrogenase I, I subunit [Acidobacterium capsulatum ATCC
           51196]
 gi|225791517|gb|ACO31607.1| NADH dehydrogenase I, I subunit [Acidobacterium capsulatum ATCC
           51196]
          Length = 183

 Score =  110 bits (275), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 52/152 (34%), Positives = 67/152 (44%), Gaps = 10/152 (6%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGS-----TSPRFRGEHALRRYPNGEERCIACKL 68
                   +  R  F+     NYP   G         RFRG H L+R  NG E+C+AC L
Sbjct: 30  TGIAKGMSITFREMFQPTEVENYPDGPGPSRGAMLQERFRGAHVLQRDENGLEKCVACFL 89

Query: 69  CEAICPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           C A CP+  I IE        R     R    Y+ID  +CI+CG C EACP DAI  G  
Sbjct: 90  CAAACPSNCIYIEAADNTEEQRISSAERYAKVYNIDYNRCIFCGYCVEACPTDAITHGHG 149

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRN 155
           FE A+     +   KE +L      +  + +N
Sbjct: 150 FELASMHATNMIMRKEDMLVQLSTGQPSLAQN 181


>gi|154149243|ref|YP_001405797.1| NADH dehydrogenase subunit I [Campylobacter hominis ATCC BAA-381]
 gi|189030926|sp|A7HZV6|NUOI_CAMHC RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|153805252|gb|ABS52259.1| NADH-quinone oxidoreductase subunit i (nadhdehydrogenase i subunit
           i) (ndh-1 subunit i) [Campylobacter hominis ATCC
           BAA-381]
          Length = 200

 Score =  110 bits (275), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 57/151 (37%), Positives = 81/151 (53%), Gaps = 5/151 (3%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKA--KTTINYPFEKGSTSPRFRGEHAL-RRYPNGE 60
           F+  +   F  E     ++ LR   K     TI YP EK   S R+RG H L R   +G 
Sbjct: 20  FKQFLHRTFRGELFIGLWVVLREMLKKNNSHTILYPMEKFELSDRYRGIHKLLRLLESGN 79

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCI C LCE IC +  I +E+     DG ++ + Y I+  +C+YCGLC + CP  AIV 
Sbjct: 80  ERCIGCGLCEKICVSNCIRMETTL-GDDGRKKVLNYSINFGRCVYCGLCADVCPELAIVH 138

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESE 151
           G ++EFA+E R    + K+ LL   D  +++
Sbjct: 139 GGDYEFASEQRAFFGFKKD-LLTKYDELKNQ 168


>gi|327191030|gb|EGE58084.1| putative NADH-ubiquinone oxidoreductase protein [Rhizobium etli
           CNPAF512]
          Length = 188

 Score =  110 bits (275), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 48/138 (34%), Positives = 73/138 (52%), Gaps = 2/138 (1%)

Query: 7   NVSFLFLKEFVGAFFLCLRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEERCIA 65
            + + F  +   A  L   Y F    T+ YP  EK     R+RG H L+R   GE +C+A
Sbjct: 11  WIGWTFFADLANALTLTFGYMFSRPVTMQYPDREKWLPYARYRGHHFLKRDEEGEIKCVA 70

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           C+LC  ICP   I +        G R   +++ID  +C++CGLC++ACP DAI  G  +E
Sbjct: 71  CELCARICPCDCIEVVPYED-EKGNRHPAKFEIDTARCLFCGLCEDACPADAIALGQQYE 129

Query: 126 FATETRQELYYDKERLLN 143
           F++ +  +L   ++ LL 
Sbjct: 130 FSSFSSADLVIGRDDLLA 147


>gi|163781771|ref|ZP_02176771.1| NADH dehydrogenase I chain I [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882991|gb|EDP76495.1| NADH dehydrogenase I chain I [Hydrogenivirga sp. 128-5-R1-1]
          Length = 213

 Score =  110 bits (275), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 42/160 (26%), Positives = 71/160 (44%), Gaps = 20/160 (12%)

Query: 12  FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL------------------ 53
              +F+    + +R+ F    T +YP+EK +   RFRG  A                   
Sbjct: 17  LFIDFIKGLSVTIRHAFSRTITTHYPYEKLTPPKRFRGFFAHKVVDGNEPQPAYDEWVER 76

Query: 54  --RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
                  G+ RC+ C LC+  CP   +    G +  +G R    ++++++ C +CG C +
Sbjct: 77  FKIEVVPGKSRCVVCMLCKRACPVPQLFEIEGKKLDNGRRVVSVFNMNLMLCTFCGFCVD 136

Query: 112 ACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
           ACPVD + +    E A+ TR++   D E L   G  W++ 
Sbjct: 137 ACPVDCLYQTDIHETASYTRKDSILDLELLEKIGKDWQAR 176


>gi|299136503|ref|ZP_07029686.1| NADH-quinone oxidoreductase, chain I [Acidobacterium sp. MP5ACTX8]
 gi|298601018|gb|EFI57173.1| NADH-quinone oxidoreductase, chain I [Acidobacterium sp. MP5ACTX8]
          Length = 165

 Score =  110 bits (275), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 57/152 (37%), Positives = 71/152 (46%), Gaps = 16/152 (10%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTS-----PRFRGEHALRR 55
           M I R   +            + LR  F+     NYP  KG         RFRG+H L+R
Sbjct: 1   MSIIRNVAA------IAKGMSITLREGFQPTEVENYPDGKGPLRGAQLQERFRGKHQLQR 54

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGT-----RRTVRYDIDMIKCIYCGLCQ 110
             NG E+C+AC LC A CPA  I IE+     +       R    Y+ID  +CI+CG C 
Sbjct: 55  DENGLEKCVACFLCAAACPANCIYIEAAENTEEVRISSAERYAKVYNIDYNRCIFCGYCV 114

Query: 111 EACPVDAIVEGPNFEFATETRQELYYDKERLL 142
           EACP DAI  G  FE A+     +   KE LL
Sbjct: 115 EACPTDAITHGHGFELASLNATSMVMRKEDLL 146


>gi|162148247|ref|YP_001602708.1| NADH-quinone oxidoreductase subunit I [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161786824|emb|CAP56407.1| putative NADH-quinone oxidoreductase subunit I [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 149

 Score =  110 bits (274), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 45/110 (40%), Positives = 62/110 (56%), Gaps = 2/110 (1%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
           YP  K    PR+RG   L R P+G+ERC+AC LC   CP   I+++   +   G      
Sbjct: 3   YPETKPPLPPRYRGRIILSRDPDGQERCVACGLCAVACPVDCISLQKTEQD--GRWYPDY 60

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNG 145
           + I+  +CI+CG C+EACP  AI   P+FE +   R  L Y+KE LL +G
Sbjct: 61  FRINFSRCIFCGFCEEACPTYAIQLTPDFEMSEYVRPSLVYEKEDLLISG 110


>gi|195953125|ref|YP_002121415.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Hydrogenobaculum sp. Y04AAS1]
 gi|195932737|gb|ACG57437.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Hydrogenobaculum sp. Y04AAS1]
          Length = 202

 Score =  110 bits (274), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 17/155 (10%)

Query: 8   VSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYP---------- 57
           +  +   +F+    + ++   +   T  YP EK +   RFRG+H    Y           
Sbjct: 16  LESVLFLDFIKGLTITMKNLLRKPITTQYPKEKITPPKRFRGKHGHFVYDGQEPPSLKAI 75

Query: 58  -------NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
                   G+ RC+AC +C+  CP   +      +  DGT++ VR+D++++ C++CGLC 
Sbjct: 76  EGFMSFEKGKSRCVACYMCQTACPMPTLFRIEAVQMPDGTKKVVRFDMNLLNCLFCGLCV 135

Query: 111 EACPVDAIVEGPNFEFATETRQELYYDKERLLNNG 145
           +ACPV+ +      E A   R +     + +   G
Sbjct: 136 DACPVECLTMSDIHEMAVYRRSQAVIHMDDMEKIG 170


>gi|322435034|ref|YP_004217246.1| NADH-quinone oxidoreductase, chain I [Acidobacterium sp. MP5ACTX9]
 gi|321162761|gb|ADW68466.1| NADH-quinone oxidoreductase, chain I [Acidobacterium sp. MP5ACTX9]
          Length = 166

 Score =  110 bits (274), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 52/137 (37%), Positives = 66/137 (48%), Gaps = 10/137 (7%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTS-----PRFRGEHALRRYPNGEERCIACKLCE 70
                 +  +  F+     NYP  KG         RFRG+H L+R  NG E+C+AC LC 
Sbjct: 8   IAKGMSITFKEMFQPTEVENYPDGKGPMRGAQFQQRFRGKHQLQRDENGLEKCVACFLCA 67

Query: 71  AICPAQAITIESGPRCHDGT-----RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           A CP+  I IE+     +       R    Y+ID  +CI+CG C EACP DAI  G  FE
Sbjct: 68  AACPSNCIYIEAAENTEEVRISSAERYAKVYNIDYNRCIFCGYCVEACPTDAITHGHGFE 127

Query: 126 FATETRQELYYDKERLL 142
            A+     L   KE LL
Sbjct: 128 LASLNATTLVMRKEDLL 144


>gi|108758967|ref|YP_630943.1| NADH dehydrogenase I subunit I [Myxococcus xanthus DK 1622]
 gi|122981133|sp|Q1D8T0|NUOI_MYXXD RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|108462847|gb|ABF88032.1| NADH dehydrogenase I, I subunit [Myxococcus xanthus DK 1622]
          Length = 254

 Score =  109 bits (273), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 48/160 (30%), Positives = 70/160 (43%), Gaps = 28/160 (17%)

Query: 12  FLKEFVGAFFLCLRYFFKA-------------------KTTINYPFEKGSTSPRFRGEHA 52
           ++   +    +  ++FF+                     TT+ YP EK      +RG H 
Sbjct: 18  YVPNLLRGLGITAKHFFRNLFGTRDTNTQVVDRTGASLMTTVAYPEEKPIYPEGYRGLHR 77

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG--------TRRTVRYDIDMIKCI 104
           L    +G+ RC+AC +C  ICPAQ I IE+G    +          +   ++ ID ++CI
Sbjct: 78  LVPREDGKPRCVACYMCATICPAQCIYIEAGEYEDEASDSEDRVIEKYPTQFVIDELRCI 137

Query: 105 YCGLCQEACPVDAIVE-GPNFEFATETRQELYYDKERLLN 143
            CGLC +ACP DAI            TRQ   YD  +LL 
Sbjct: 138 VCGLCVDACPKDAIRMDTYTHTPPEYTRQNFVYDIPKLLK 177


>gi|33864284|ref|NP_895844.1| NADH dehydrogenase subunit I [Prochlorococcus marinus str. MIT
           9313]
 gi|81711995|sp|Q7TUL5|NDHI_PROMM RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|33641064|emb|CAE22193.1| putative NADH Dehydrogenase subunit [Prochlorococcus marinus str.
           MIT 9313]
          Length = 218

 Score =  109 bits (272), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +    +   +  +   T+ YP+EK   S R+RG           ++CIAC++C  +CP 
Sbjct: 22  LIQGLAVTFDHLRRRPITVQYPYEKLIPSERYRGRI-----HYEFDKCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +    Y ID   CI+CG C E CP + +     +E A   R  L 
Sbjct: 77  NLPVVDWVMNKETKKKELRNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAYDRHSLN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|167463146|ref|ZP_02328235.1| NADH dehydrogenase subunit I [Paenibacillus larvae subsp. larvae
           BRL-230010]
          Length = 151

 Score =  109 bits (272), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 43/134 (32%), Positives = 58/134 (43%), Gaps = 7/134 (5%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           +K  +    + L+     K T  YP        RFRG            +CI C +C  +
Sbjct: 1   MKGIIKGLGVTLKSMVSKKVTYAYPDAPLQMPDRFRGIQHFEPD-----KCIVCNMCAKV 55

Query: 73  CPAQAITIESGPRC--HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
           CP   IT+   P        +    YDI+   CI C  C E CP +AIV   NFE +T +
Sbjct: 56  CPTDCITLTGKPNPDPEKKGKVIDTYDINFEICILCDFCTEVCPTEAIVMTGNFELSTYS 115

Query: 131 RQELYYDKERLLNN 144
           R EL+ + E L NN
Sbjct: 116 RDELFKNMEWLANN 129


>gi|319760609|ref|YP_004124547.1| NADH-quinone oxidoreductase subunit I [Candidatus Blochmannia vafer
           str. BVAF]
 gi|318039323|gb|ADV33873.1| NADH-quinone oxidoreductase subunit I [Candidatus Blochmannia vafer
           str. BVAF]
          Length = 181

 Score =  109 bits (272), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 3/145 (2%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M   +     +F    + + ++  R  F  + T  YP      S R+RG   L R   G 
Sbjct: 1   MIKLKQFFIHIF--SILRSIWMVGRQAFNQRETQMYPDITCKVSSRYRGRIILTRDKLGN 58

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERC+AC LC   CP   I+++       G      + I+  +CI+CG+C+EACP  AI  
Sbjct: 59  ERCVACNLCAVSCPVGCISLKKSETID-GRWYPDFFRINFSRCIFCGMCEEACPTAAIQL 117

Query: 121 GPNFEFATETRQELYYDKERLLNNG 145
             +FE +   R +L Y+K  LL +G
Sbjct: 118 ISDFEMSDFKRGDLVYEKSDLLVSG 142


>gi|237756344|ref|ZP_04584894.1| NADH-quinone oxidoreductase, subunit i 2 [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691495|gb|EEP60553.1| NADH-quinone oxidoreductase, subunit i 2 [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 230

 Score =  109 bits (272), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 45/180 (25%), Positives = 78/180 (43%), Gaps = 27/180 (15%)

Query: 8   VSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALR------------- 54
           V  +F  +F+      +++ +K   T+++P+E  +   RFRG H LR             
Sbjct: 14  VEKIFFLDFIKGLKTTIKHLWKKVITVDFPYEVVTPPARFRGIHGLRTVDGTENPEFDSW 73

Query: 55  -------RYPNGEERCIACKLCEAICPAQAITIE-------SGPRCHDGTRRTVRYDIDM 100
                      GE RCIACK C+A CP   +               H G +    +++D+
Sbjct: 74  VKRLKIKPPEPGETRCIACKFCQAACPVPELFDIQSEKLDVPEDHPHYGLKVMTVFNMDL 133

Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDS 160
            KC +CGLC +ACP D I+    ++ ++ TR+    DK+ L    + + +   +    + 
Sbjct: 134 SKCTFCGLCTQACPTDCIIMTDIYDLSSYTRKSWVLDKDVLTQIANDFVARRGKEKFDEK 193


>gi|118340561|gb|ABK80611.1| putative 4Fe-4S ferredoxin subunit I, iron-sulfur binding domain
           [uncultured marine Nitrospinaceae bacterium]
          Length = 189

 Score =  109 bits (272), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 74/171 (43%), Gaps = 23/171 (13%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFF----------------KAKTTINYPFEKGSTS 44
           M  +  +    ++ E +   +L  R FF                +   T+ YP E+    
Sbjct: 11  MTWWEKS----YIPEILKGMWLTSRRFFHNLFGFIPFFLGTEKDRRIMTVYYPEEQVEYP 66

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC---HDGTRRTVRYDIDMI 101
             +RG   L +  +G+  C+AC LCE  CPA  I I         +   R    ++ID  
Sbjct: 67  IAYRGRPVLAQNEDGQPACVACGLCEIACPAYCIDIVPAENTGKQNQYERWPEVFNIDYA 126

Query: 102 KCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEI 152
            CI+CG C+EACP +AI    + E +   R+++ Y KE+LL      +  I
Sbjct: 127 ICIFCGNCEEACPEEAIFMSDDCEISMLDRKQMLYTKEQLLTPVADLQKRI 177


>gi|124024377|ref|YP_001018684.1| NADH dehydrogenase subunit I [Prochlorococcus marinus str. MIT
           9303]
 gi|156632624|sp|A2CD59|NDHI_PROM3 RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|123964663|gb|ABM79419.1| putative NADH Dehydrogenase subunit [Prochlorococcus marinus str.
           MIT 9303]
          Length = 218

 Score =  109 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +    +   +  +   T+ YP+EK   S R+RG           ++CIAC++C  +CP 
Sbjct: 22  LIQGLAVTFDHLRRRPITVQYPYEKLIPSERYRGRI-----HYEFDKCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +    Y ID   CI+CG C E CP + +     +E A   R  L 
Sbjct: 77  NLPVVDWVMNKETKKKELRNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAYDRHSLN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|251799769|ref|YP_003014500.1| NADH dehydrogenase subunit I [Paenibacillus sp. JDR-2]
 gi|247547395|gb|ACT04414.1| NADH-quinone oxidoreductase, chain I [Paenibacillus sp. JDR-2]
          Length = 149

 Score =  109 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 7/134 (5%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           +   V    + L+     K T +YP E      RFRG             CI C  C  I
Sbjct: 1   MNGLVQGLGVTLKSMVSKKVTTSYPDEPFLMPDRFRGIQHFIPD-----LCIVCNQCARI 55

Query: 73  CPAQAITIESGPRCHD--GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
           CP   IT+   P        +    +D++   CI C LC E CP +AIV   +FE +  +
Sbjct: 56  CPTDCITLTGKPNPDPAKKGKVIDTFDLNFEICILCDLCTEVCPTEAIVMTNHFELSAYS 115

Query: 131 RQELYYDKERLLNN 144
           R +L+ D E L +N
Sbjct: 116 RDDLFKDVEWLTDN 129


>gi|32267094|ref|NP_861126.1| NADH dehydrogenase subunit I [Helicobacter hepaticus ATCC 51449]
 gi|81665422|sp|Q7VFT0|NUOI_HELHP RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|32263146|gb|AAP78192.1| donor-ubiquinone reductase I [Helicobacter hepaticus ATCC 51449]
          Length = 212

 Score =  108 bits (270), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 53/138 (38%), Positives = 68/138 (49%), Gaps = 3/138 (2%)

Query: 7   NVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEERCIA 65
            +   F  +        L  FF  K TI+YP E    SPR+R  H L R   +  ERCI 
Sbjct: 28  TLKTSFSLDLFSGLKTALGAFFSPKVTIHYPLESAPLSPRYRAIHKLQRLLESENERCIG 87

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           C LCE IC +  I I +     DG ++ + Y I+  +CIYCGLC E CP  AIV G   E
Sbjct: 88  CGLCEKICTSNCIRIITDK-GEDGRKKILNYSINFGRCIYCGLCAEVCPELAIVHGDLVE 146

Query: 126 FATETRQELYYDKERLLN 143
            A+  R    + K +LL 
Sbjct: 147 NASTQRAFFGF-KPQLLE 163


>gi|116747653|ref|YP_844340.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Syntrophobacter fumaroxidans MPOB]
 gi|156632692|sp|A0LEQ3|NUOI1_SYNFM RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName:
           Full=NADH dehydrogenase I subunit I 1; AltName:
           Full=NDH-1 subunit I 1
 gi|116696717|gb|ABK15905.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Syntrophobacter fumaroxidans MPOB]
          Length = 149

 Score =  108 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 1/125 (0%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPN-GEERCIACKLCEAI 72
              V    +  R   +   T+ YP E  + SP FRG   L+ + + G  +CIAC  CE +
Sbjct: 12  WSLVEGMRVTFRRLLRPVVTVQYPREVVTLSPAFRGHIELKSFADTGTHKCIACGTCERM 71

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           CP+  I ++       G +    Y ID  +C  CG+C E+CP   +     +E A E+R 
Sbjct: 72  CPSNVIKVQGTKAQPKGAKVATHYVIDFTRCSLCGICVESCPTGTLQYSTEYELAGESRW 131

Query: 133 ELYYD 137
           +   D
Sbjct: 132 DGVID 136


>gi|313903490|ref|ZP_07836881.1| NADH-quinone oxidoreductase, chain I [Thermaerobacter subterraneus
           DSM 13965]
 gi|313466311|gb|EFR61834.1| NADH-quinone oxidoreductase, chain I [Thermaerobacter subterraneus
           DSM 13965]
          Length = 159

 Score =  108 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 2/147 (1%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEERCIACKLCEAI 72
           K  V    +  R   +   T+NYP E+      +RG   L      G+  C AC LC   
Sbjct: 12  KSLVAGHAVTWRSAARPPVTVNYPDERPDLPKGYRGIPVLKTNLETGDLNCTACGLCARS 71

Query: 73  CPAQAITIESGPRCHDGT-RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           CP   I +      +    RR   ++IDM +C+ C LC EACP DA+    +FE A  + 
Sbjct: 72  CPVNVIEVIEETDENGKRLRRPKVFNIDMSRCMVCNLCVEACPFDALEMANHFEIADYSV 131

Query: 132 QELYYDKERLLNNGDRWESEIVRNIVT 158
             L ++KE+L     ++++  +     
Sbjct: 132 PNLIFNKEQLAEIWKQYDAVRLAGGEK 158


>gi|225850949|ref|YP_002731183.1| NADH-quinone oxidoreductase subunit i [Persephonella marina EX-H1]
 gi|225646012|gb|ACO04198.1| NADH-quinone oxidoreductase subunit i [Persephonella marina EX-H1]
          Length = 200

 Score =  108 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 17/162 (10%)

Query: 7   NVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHA-------------- 52
           N   +F  +F+    +  R   +   T  +PFEK +   RFRG HA              
Sbjct: 14  NRERIFFVDFIKGMRVTFRNLLRKTVTTAFPFEKLTPPKRFRGTHAHRVKNGKEPPSFKV 73

Query: 53  ---LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
                    GE RC+AC +C   CP   +      +  DG ++ VR+D++++ C+YCGLC
Sbjct: 74  IEKFMDIDTGESRCVACYMCMQACPVPFLFNIEAVQLPDGRKKVVRFDMNLLNCMYCGLC 133

Query: 110 QEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
            EACPVD ++    +E A+  R       + +   G  ++  
Sbjct: 134 TEACPVDCLIMTDIYETASYHRASCVLHIDDMAKRGIDFDRR 175


>gi|317121161|ref|YP_004101164.1| NADH-quinone oxidoreductase, chain I [Thermaerobacter marianensis
           DSM 12885]
 gi|315591141|gb|ADU50437.1| NADH-quinone oxidoreductase, chain I [Thermaerobacter marianensis
           DSM 12885]
          Length = 159

 Score =  107 bits (268), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 2/147 (1%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEERCIACKLCEAI 72
           K  V    +  R   +   T+NYP E+      +RG   L      G+  C AC LC   
Sbjct: 12  KSIVVGHAVTWRSTTRPPVTVNYPDERPDLPKGYRGIPVLKTNLETGQLNCTACGLCARS 71

Query: 73  CPAQAITIESGPRCHDGT-RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           CP   I +      +    RR   ++IDM +C+ C LC EACP DA+    +FE A  + 
Sbjct: 72  CPVNVIEVVEETDENGKRLRRPKVFNIDMSRCMVCNLCVEACPFDALEMANHFEIADYSV 131

Query: 132 QELYYDKERLLNNGDRWESEIVRNIVT 158
             L ++KE+L     ++++  +     
Sbjct: 132 PNLIFNKEQLAEIWKQYDAVRLAGGEK 158


>gi|152993799|ref|YP_001359520.1| NADH dehydrogenase subunit I [Sulfurovum sp. NBC37-1]
 gi|151425660|dbj|BAF73163.1| NADH-quinone oxidoreductase, chain I [Sulfurovum sp. NBC37-1]
          Length = 207

 Score =  107 bits (268), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 53/153 (34%), Positives = 75/153 (49%), Gaps = 8/153 (5%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYF----FKA-KTTINYPFEKGSTSPRFRGEH-ALR 54
           M  F+  V+  F  E +    + +R      F+    T+ YPFEK   SPR+R  H  LR
Sbjct: 29  MDKFKQVVNRTFKLELLVGLGVTMREMINALFRGQMHTVKYPFEKLPISPRYRAIHDMLR 88

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
              +G  RCI C LCE IC +  IT+++     +  +    Y I+  +CI+CG C E CP
Sbjct: 89  LLESGHYRCIGCGLCEKICISNCITMDTR-YDENQRKEVSEYTINFGRCIFCGYCAEVCP 147

Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLNNGDR 147
             AIV G  +E A+E R       E +L   D+
Sbjct: 148 ELAIVHGQRYETASEQRASFSL-FEDMLTPIDK 179


>gi|242310562|ref|ZP_04809717.1| NADH-quinone oxidoreductase subunit I [Helicobacter pullorum MIT
           98-5489]
 gi|239522960|gb|EEQ62826.1| NADH-quinone oxidoreductase subunit I [Helicobacter pullorum MIT
           98-5489]
          Length = 204

 Score =  107 bits (268), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 61/168 (36%), Positives = 87/168 (51%), Gaps = 10/168 (5%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKT-TINYPFEKGSTSPRFRGEHAL-RRYPNG 59
           + F    +     E     +L L+ F KA+  T+ YP EK   SPR+R  H L R   +G
Sbjct: 18  QKFISFWNRALKGELFVGLWLVLKEFCKAQIHTVQYPLEKLPLSPRYRAVHELKRLLESG 77

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            ERCI C LCE IC +  I +E+G    D  ++   Y I+  +CIYCGLC E CP  AIV
Sbjct: 78  NERCIGCGLCEKICVSNCIRMETG-YGEDKRKKVFEYTINFGRCIYCGLCAEVCPELAIV 136

Query: 120 EGPNFEFATETR------QELYYDKERLLNNGDRWESEIVRNIVTDSP 161
            G  +E A+E R      +++    +++L  GD  E E V ++  D+ 
Sbjct: 137 HGKRYENASEQRASFSLKEDMLTPMDKVLKGGDS-EFEGVGSVSVDAD 183


>gi|170077547|ref|YP_001734185.1| NADH dehydrogenase subunit I [Synechococcus sp. PCC 7002]
 gi|75527215|sp|Q8KX59|NDHI_SYNP2 RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|22651979|gb|AAN03534.1|AF381034_2 NADH dehydrogenase subunit I [Synechococcus sp. PCC 7002]
 gi|169885216|gb|ACA98929.1| NADH-plastoquinone oxidoreductase, I subunit [Synechococcus sp. PCC
           7002]
          Length = 203

 Score =  107 bits (268), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 52/122 (42%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 +   +  +   T+ YP+EK   S RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGLSVTFDHMRRRPVTVQYPYEKLIPSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +    Y ID   CI+CG C E CP + +     +E AT  R EL 
Sbjct: 77  NLPVVDWEFDKSIKKKTLKHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELATYDRHELN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|300775181|ref|ZP_07085043.1| NADH-quinone oxidoreductase subunit I [Chryseobacterium gleum ATCC
           35910]
 gi|300505921|gb|EFK37057.1| NADH-quinone oxidoreductase subunit I [Chryseobacterium gleum ATCC
           35910]
          Length = 185

 Score =  107 bits (268), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 11/144 (7%)

Query: 11  LFLKEFVGAFFLCLRYFFKA-----KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
           ++L        +  ++  +          +YP  +   +  +RG+H L+R   G ERC A
Sbjct: 21  IYLPAIFTGMGITFKHAVRTVIKGAPAVYSYPEVQKPRTTIWRGQHVLKRDEEGRERCTA 80

Query: 66  CKLCEAICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           C LC   CPA+AIT+ +  R           +    Y+I+M++CI+CG+C+EACP  AI 
Sbjct: 81  CGLCAVACPAEAITMTAAERTKEEKHLYREEKYASVYEINMLRCIFCGMCEEACPKSAIY 140

Query: 120 EGPNFEFATETRQELYYDKERLLN 143
                      R    Y K++L+ 
Sbjct: 141 LTDRLVDVETNRGSFIYGKDKLVE 164


>gi|209522711|ref|ZP_03271269.1| NADH-plastoquinone oxidoreductase, I subunit [Arthrospira maxima
           CS-328]
 gi|209496760|gb|EDZ97057.1| NADH-plastoquinone oxidoreductase, I subunit [Arthrospira maxima
           CS-328]
          Length = 207

 Score =  107 bits (268), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 +   +  +   T+ YP+EK   S RFRG            +CI+C++C  +CP 
Sbjct: 22  IGQGLSVTFDHMKRRPITVQYPYEKLIPSERFRGRIHFEFD-----KCISCEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         ++   Y ID   CI+CG C E CP + +     +E A   R EL 
Sbjct: 77  NLPVVDWEFNRETKKKKLKHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAYDRHELN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|308275208|emb|CBX31805.1| NADH-quinone oxidoreductase subunit I 1 [uncultured
           Desulfobacterium sp.]
          Length = 152

 Score =  107 bits (267), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 3/143 (2%)

Query: 4   FRCNVSFLFL--KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEH-ALRRYPNGE 60
           F+  V  +F   K  +    +  ++ F+   T+ YP +K   +P FRG   A+       
Sbjct: 7   FKQYVKEIFTGSKSLIIGMGITFKHMFRPIVTVQYPRQKPIMTPHFRGHIEAILFDDTKS 66

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             C+AC LC   CP+  I ++         +   +Y ID  KC  CGLC + CP   +  
Sbjct: 67  HHCVACGLCARTCPSHVIKVQGEKTKAGDRKYGKQYFIDFTKCSLCGLCVDVCPEKTLKF 126

Query: 121 GPNFEFATETRQELYYDKERLLN 143
              +E A  +R +   D  + L 
Sbjct: 127 SDEYELAFYSRWDGVMDIMQRLE 149


>gi|187736098|ref|YP_001878210.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Akkermansia
           muciniphila ATCC BAA-835]
 gi|187426150|gb|ACD05429.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Akkermansia
           muciniphila ATCC BAA-835]
          Length = 187

 Score =  107 bits (267), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 49/157 (31%), Positives = 78/157 (49%), Gaps = 22/157 (14%)

Query: 11  LFLKEFVGAFFLCLRYFF-------KAK---------TTINYPFEKGS--TSPRFRGEHA 52
            +L+  +G  +L +R+         + K          T+ YP  +        +RG   
Sbjct: 17  FYLQSILGGLWLTIRHLVLALLGKSRNKKELAGSGIGVTMQYPEARWDKHLPKYYRGAPV 76

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR----YDIDMIKCIYCGL 108
           L +  +G ERC++C+LCE ICPA+AITI  GP       +  +    + IDM++CIYCG+
Sbjct: 77  LVKGEDGRERCVSCQLCEFICPARAITITPGPIQEGPWGKVEKAPREFQIDMLRCIYCGM 136

Query: 109 CQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNG 145
           C+EACP  AI    N+ F    + +  ++K +L   G
Sbjct: 137 CEEACPEQAIFMSHNYLFTPTDKTQAIHNKAKLYELG 173


>gi|148240626|ref|YP_001226013.1| NADH dehydrogenase subunit I [Synechococcus sp. WH 7803]
 gi|156632628|sp|A5GP51|NDHI_SYNPW RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|147849165|emb|CAK24716.1| NAD(P)H-quinone oxidoreductase subunit I [Synechococcus sp. WH
           7803]
          Length = 218

 Score =  107 bits (267), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 +   +  +   T+ YP+EK   S R+RG           ++CIAC++C  +CP 
Sbjct: 22  LTQGLAVTFDHMKRRPVTVQYPYEKLIPSERYRGRI-----HYEFDKCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +    Y ID   CI+CG C E CP + +     +E A   R  L 
Sbjct: 77  NLPVVDWVMNKETKKKELRNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAFDRHSLN 136

Query: 136 YD 137
           +D
Sbjct: 137 FD 138


>gi|87123593|ref|ZP_01079444.1| NADH dehydrogenase I chain I (or NdhI) [Synechococcus sp. RS9917]
 gi|86169313|gb|EAQ70569.1| NADH dehydrogenase I chain I (or NdhI) [Synechococcus sp. RS9917]
          Length = 218

 Score =  107 bits (267), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 +   +  +   T+ YP+EK   S R+RG           ++CIAC++C  +CP 
Sbjct: 22  LTQGLAVTFDHMKRRPVTVQYPYEKLIPSERYRGRI-----HYELDKCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +    Y ID   CI+CG C E CP + +     +E A   R  L 
Sbjct: 77  NLPVVDWVMNKETKKKDLRNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAFDRHSLN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|218439484|ref|YP_002377813.1| NADH dehydrogenase subunit I [Cyanothece sp. PCC 7424]
 gi|226724529|sp|B7KK60|NDHI_CYAP7 RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|218172212|gb|ACK70945.1| NADH-plastoquinone oxidoreductase, I subunit [Cyanothece sp. PCC
           7424]
          Length = 200

 Score =  107 bits (267), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 +   +  +   T+ YP+EK   S RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGLAVTFDHMRRRPVTVQYPYEKLIPSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +    Y ID   CI+CG C E CP + +     +E A+  R EL 
Sbjct: 77  NLPVVDWEFNKAVKKKELKHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELASYDRHELN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|34556907|ref|NP_906722.1| NADH dehydrogenase subunit I [Wolinella succinogenes DSM 1740]
 gi|81707394|sp|Q7MA42|NUOI_WOLSU RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|34482622|emb|CAE09622.1| NADH DEHYDROGENASE I CHAIN I [Wolinella succinogenes]
          Length = 205

 Score =  107 bits (267), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 57/157 (36%), Positives = 81/157 (51%), Gaps = 8/157 (5%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKT-TINYPFEKGSTSPRFRGEHAL-RRYPN 58
           +++FR +VS     E     +L LR   +    T  YP EK   SPR+R  H L R   +
Sbjct: 24  LQVFRRSVS----GELFKGLWLVLREMLRFNIHTTQYPKEKLPLSPRYRAIHELLRLLES 79

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           G ERCI C LCE IC +  I +E+     DG ++   Y I+  +CI+CG C E CP  AI
Sbjct: 80  GNERCIGCGLCEKICISNCIRMETS-YGEDGRKKVHEYTINFGRCIFCGFCAEVCPELAI 138

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRN 155
           V G  +E A+E R      KE +L   +R+ ++  + 
Sbjct: 139 VHGGRYENASEQRAHFGL-KEDMLTPMERFMNQGQKE 174


>gi|284050278|ref|ZP_06380488.1| NADH dehydrogenase subunit I [Arthrospira platensis str. Paraca]
 gi|291568240|dbj|BAI90512.1| NADH dehydrogenase subunit I [Arthrospira platensis NIES-39]
          Length = 207

 Score =  107 bits (267), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 +   +  +   T+ YP+EK   S RFRG            +CI+C++C  +CP 
Sbjct: 22  IGQGLSVTFDHMKRRPITVQYPYEKLIPSERFRGRIHFEFD-----KCISCEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         ++   Y ID   CI+CG C E CP + +     +E A   R EL 
Sbjct: 77  NLPVVDWEFNRETKKKKLKHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAYDRHELN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|57505808|ref|ZP_00371733.1| NADH2 dehydrogenase (ubiquinone) I chain I Cj1571c [Campylobacter
           upsaliensis RM3195]
 gi|57015838|gb|EAL52627.1| NADH2 dehydrogenase (ubiquinone) I chain I Cj1571c [Campylobacter
           upsaliensis RM3195]
          Length = 216

 Score =  107 bits (267), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 57/167 (34%), Positives = 78/167 (46%), Gaps = 13/167 (7%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKA--KTTINYPFEKGSTSPRFRGEHAL-RRYPN 58
           R  + +V      E     ++ +R   K     TI YPFEK     R+R  H L R   +
Sbjct: 23  RALKRSVKL----ELFVGLWVVMRELLKKGNSATIKYPFEKVQIDNRYRAVHRLMRFIES 78

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ERCI C LCE IC +  I +E+     +G ++   Y I++ +CIYCG C E CP  AI
Sbjct: 79  ENERCIGCGLCEKICISNCIRMETSLD-ENGRKKANNYSINLGRCIYCGFCAEVCPELAI 137

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRW----ESEIVRNIVTDSP 161
           V G  +E A E R    Y KE  L   D+     E E   ++  D+ 
Sbjct: 138 VHGKEYENAAEQRSYFGY-KEDFLTPIDKLKNQVEFEGAGSLRKDAD 183


>gi|206970194|ref|ZP_03231147.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus cereus AH1134]
 gi|206734771|gb|EDZ51940.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus cereus AH1134]
          Length = 142

 Score =  107 bits (267), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 44/147 (29%), Positives = 59/147 (40%), Gaps = 7/147 (4%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           +K         L    K K T +YP +      RFRG           E+CI C  C  I
Sbjct: 1   MKGLFKGLKYTLSNLSKKKVTYDYPNQPLPLPDRFRGIQKFY-----PEKCIVCNQCSNI 55

Query: 73  CPAQAITIESGPRCHD--GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
           CP   I +            +    YDI+   CI C LC E CP +AIV   NFE A  +
Sbjct: 56  CPTDCIQLTGKKHPDPTKKGKIIDTYDINFEICILCDLCTEVCPTEAIVMTNNFELAEYS 115

Query: 131 RQELYYDKERLLNNGDRWESEIVRNIV 157
           R +L+ + + L  N +  E+    N  
Sbjct: 116 RDDLFKNLQWLDENDENDENVRKENKA 142


>gi|33866803|ref|NP_898362.1| NADH dehydrogenase subunit I [Synechococcus sp. WH 8102]
 gi|81712227|sp|Q7U403|NDHI_SYNPX RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|33639404|emb|CAE08788.1| NADH dehydrogenase I chain I (or NdhI) [Synechococcus sp. WH 8102]
          Length = 215

 Score =  107 bits (266), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F +   +  +   T+ YP+EK   S R+RG           ++CIAC++C  +CP 
Sbjct: 22  LAQGFSVTFDHMKRRPVTVQYPYEKLIPSERYRGRI-----HYEFDKCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +    Y ID   CI+CG C E CP + +     +E A   R  L 
Sbjct: 77  NLPVVDWVMNKATKKKELRNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAFDRHSLN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|296268312|ref|YP_003650944.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermobispora bispora DSM 43833]
 gi|296091099|gb|ADG87051.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermobispora
           bispora DSM 43833]
          Length = 234

 Score =  107 bits (266), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 44/136 (32%), Positives = 58/136 (42%), Gaps = 13/136 (9%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 + LR+  +   T  YP  K    PR RG  AL      EE C  C LC   CP 
Sbjct: 13  LAKGLGVTLRHMLRKSDTQQYPEVKPDLPPRSRGVIALV-----EENCTVCMLCARECPD 67

Query: 76  QAITIESGPRC--------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
             I I+S                    R+ ID   C+YCG+C E CP DA+   P FE+A
Sbjct: 68  WCIYIDSHKETLPAPEGGRPRVRNVLDRFAIDFSLCMYCGICVEVCPFDALFWSPEFEYA 127

Query: 128 TETRQELYYDKERLLN 143
               ++L ++K+RL  
Sbjct: 128 EYDIRDLLHEKDRLRE 143


>gi|307152384|ref|YP_003887768.1| NADH-plastoquinone oxidoreductase, I subunit [Cyanothece sp. PCC
           7822]
 gi|306982612|gb|ADN14493.1| NADH-plastoquinone oxidoreductase, I subunit [Cyanothece sp. PCC
           7822]
          Length = 196

 Score =  107 bits (266), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 +   +  +   T+ YP+EK   S RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGLAVTFDHMRRRPVTVQYPYEKLIPSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +    Y ID   CI+CG C E CP + +     +E A+  R EL 
Sbjct: 77  NLPVVDWEFNKAIKKKELKHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELASYDRHELN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|67920416|ref|ZP_00513936.1| NADH-plastoquinone oxidoreductase, subunit I:NADH-quinone
           oxidoreductase, chain I [Crocosphaera watsonii WH 8501]
 gi|67857900|gb|EAM53139.1| NADH-plastoquinone oxidoreductase, subunit I:NADH-quinone
           oxidoreductase, chain I [Crocosphaera watsonii WH 8501]
          Length = 196

 Score =  107 bits (266), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 53/122 (43%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 +   +  +   T+ YP+EK   S RFRG           ++CIAC++C  +CP 
Sbjct: 22  IGQGLSVTFDHMRRRPVTVQYPYEKLIPSERFRGRI-----HYEFDKCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +    Y ID   CI+CG C E CP + +     +E AT  R EL 
Sbjct: 77  NLPVVDWEFNKASKKKELKHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELATYDRHELN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|319650857|ref|ZP_08004994.1| NADH dehydrogenase subunit I [Bacillus sp. 2_A_57_CT2]
 gi|317397455|gb|EFV78156.1| NADH dehydrogenase subunit I [Bacillus sp. 2_A_57_CT2]
          Length = 139

 Score =  107 bits (266), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 44/136 (32%), Positives = 58/136 (42%), Gaps = 7/136 (5%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           +          L+   + K T +YP E      RFRG           E+CI C  C  I
Sbjct: 1   MLGLAKGLSYTLKNLTRKKVTYDYPNEPLPLPDRFRGIQKFY-----PEKCIVCNQCANI 55

Query: 73  CPAQAI--TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
           CP   I  T +  P      +    YDI+   CI C LC E CP +AI+   NFE A  +
Sbjct: 56  CPTDCIQLTGKKHPDPAKKGKIIDTYDINFEICILCDLCTEVCPTEAIIMTNNFELAEYS 115

Query: 131 RQELYYDKERLLNNGD 146
           R EL+ + E L  N +
Sbjct: 116 RDELFKNLEWLDENDE 131


>gi|304407744|ref|ZP_07389395.1| NADH-quinone oxidoreductase, chain I [Paenibacillus curdlanolyticus
           YK9]
 gi|304343227|gb|EFM09070.1| NADH-quinone oxidoreductase, chain I [Paenibacillus curdlanolyticus
           YK9]
          Length = 149

 Score =  107 bits (266), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 43/137 (31%), Positives = 59/137 (43%), Gaps = 7/137 (5%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           +K       + L+     K T +YP        R+RG             CI C  C  I
Sbjct: 1   MKGIFKGMGVTLKAMTAPKVTTSYPDAPYFMPERYRGIQHFEPD-----LCIVCNQCVRI 55

Query: 73  CPAQAITIESGPRCHD--GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
           CP   IT+   P        +    +D++   CI C LC E CP +AIV   NFE A+ +
Sbjct: 56  CPTDCITLTGKPNPDPDKKGKVIDTFDLNFEICILCDLCTEVCPTEAIVMTGNFELASYS 115

Query: 131 RQELYYDKERLLNNGDR 147
           R EL+ DK+ L +N  R
Sbjct: 116 RDELFKDKQWLTDNDTR 132


>gi|16332085|ref|NP_442813.1| NADH dehydrogenase subunit I [Synechocystis sp. PCC 6803]
 gi|128917|sp|P26525|NDHI_SYNY3 RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|47556|emb|CAA44375.1| NDHI [Synechocystis sp. PCC 6803]
 gi|1001394|dbj|BAA10884.1| NADH dehydrogenase subunit; NdhI [Synechocystis sp. PCC 6803]
          Length = 193

 Score =  107 bits (266), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 +   +  +   T+ YP+EK   S RFRG            +CIAC++C  +CP 
Sbjct: 23  IGQGLAVTFDHMSRRPITVQYPYEKLIPSERFRGRIHFEFD-----KCIACEVCVRVCPI 77

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +    Y ID   CI+CG C E CP + +     +E A   R +L 
Sbjct: 78  NLPVVDWEFNKAVKKKELKHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAYDRHDLN 137

Query: 136 YD 137
           YD
Sbjct: 138 YD 139


>gi|238061176|ref|ZP_04605885.1| 4Fe-4S ferredoxin iron-sulfur binding protein [Micromonospora sp.
           ATCC 39149]
 gi|237882987|gb|EEP71815.1| 4Fe-4S ferredoxin iron-sulfur binding protein [Micromonospora sp.
           ATCC 39149]
          Length = 226

 Score =  106 bits (265), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 45/134 (33%), Positives = 57/134 (42%), Gaps = 13/134 (9%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            V    + LR   +  TT  YP       PR RG  AL       E C  C LC   CP 
Sbjct: 28  LVKGLAVTLRTMTRRSTTQQYPDVAPELPPRSRGVIALL-----AENCTVCMLCARECPD 82

Query: 76  QAITIESGPRC--------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
             I I+S                    R+DID   C+YCG+C E CP DA+   P FE+A
Sbjct: 83  WCIYIDSHKEEVAVPGAARPRQRNVLDRFDIDFSLCMYCGICVEVCPFDALYWSPEFEYA 142

Query: 128 TETRQELYYDKERL 141
               ++L +DK+ L
Sbjct: 143 EYDIRDLLHDKDHL 156


>gi|78213919|ref|YP_382698.1| NADH dehydrogenase subunit I [Synechococcus sp. CC9605]
 gi|110287713|sp|Q3AGY9|NDHI_SYNSC RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|78198378|gb|ABB36143.1| NADH-plastoquinone oxidoreductase, I subunit [Synechococcus sp.
           CC9605]
          Length = 215

 Score =  106 bits (265), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F +   +  +   T+ YP+EK   S R+RG           ++CIAC++C  +CP 
Sbjct: 22  LAQGFSVTFDHMQRRPVTVQYPYEKLIPSERYRGRI-----HYEFDKCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +    Y ID   CI+CG C E CP + +     +E A   R  L 
Sbjct: 77  NLPVVDWVMNKATKKKELRNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAFDRHSLN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|218245872|ref|YP_002371243.1| NADH dehydrogenase subunit I [Cyanothece sp. PCC 8801]
 gi|257058920|ref|YP_003136808.1| NADH dehydrogenase subunit I [Cyanothece sp. PCC 8802]
 gi|226724530|sp|B7K0U6|NDHI_CYAP8 RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|218166350|gb|ACK65087.1| NADH-plastoquinone oxidoreductase, I subunit [Cyanothece sp. PCC
           8801]
 gi|256589086|gb|ACU99972.1| NADH-plastoquinone oxidoreductase, I subunit [Cyanothece sp. PCC
           8802]
          Length = 193

 Score =  106 bits (265), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 52/122 (42%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 +   +  +   T+ YP+EK   S RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGLSVTFDHMRRRPVTVQYPYEKLIPSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +    Y ID   CI+CG C E CP + +     +E AT  R EL 
Sbjct: 77  NLPVVDWEFNKAVKKKELKHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELATYDRHELN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|159036135|ref|YP_001535388.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Salinispora arenicola CNS-205]
 gi|157914970|gb|ABV96397.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Salinispora
           arenicola CNS-205]
          Length = 216

 Score =  106 bits (265), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 45/136 (33%), Positives = 58/136 (42%), Gaps = 13/136 (9%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            V    + L+   +   T  YP    +  PR RG  AL      EE C  C LC   CP 
Sbjct: 25  LVKGLAVTLKTMTRRSATQQYPDVAPALPPRSRGVIALL-----EENCTVCMLCARECPD 79

Query: 76  QAITIESGPRC--------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
             I I+S                    R+DID   C+YCG+C E CP DA+   P FE+A
Sbjct: 80  WCIYIDSHKEEVAVPGATRPRQRNVLDRFDIDFSLCMYCGICIEVCPFDALYWSPEFEYA 139

Query: 128 TETRQELYYDKERLLN 143
               ++L +DKE L  
Sbjct: 140 EYDIRDLLHDKEHLSE 155


>gi|315638070|ref|ZP_07893255.1| NADH-quinone oxidoreductase subunit I [Campylobacter upsaliensis
           JV21]
 gi|315481918|gb|EFU72537.1| NADH-quinone oxidoreductase subunit I [Campylobacter upsaliensis
           JV21]
          Length = 216

 Score =  106 bits (265), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 57/167 (34%), Positives = 77/167 (46%), Gaps = 13/167 (7%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKA--KTTINYPFEKGSTSPRFRGEHAL-RRYPN 58
           R  + +V      E     ++ +R   K     TI YPFEK     R+R  H L R   +
Sbjct: 23  RALKRSVKL----ELFVGLWVVMRELLKKGNSATIKYPFEKVQIDNRYRAVHRLMRFIES 78

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ERCI C LCE IC +  I +E+      G ++   Y I++ +CIYCG C E CP  AI
Sbjct: 79  ENERCIGCGLCEKICISNCIRMETSLD-EKGRKKANNYSINLGRCIYCGFCAEVCPELAI 137

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRW----ESEIVRNIVTDSP 161
           V G  +E A E R    Y KE  L   D+     E E   ++  D+ 
Sbjct: 138 VHGKEYENAAEQRSYFGY-KEDFLTPIDKLKNQVEFEGAGSLRKDAD 183


>gi|315501489|ref|YP_004080376.1| 4fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Micromonospora sp. L5]
 gi|315408108|gb|ADU06225.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Micromonospora sp. L5]
          Length = 196

 Score =  106 bits (265), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 44/134 (32%), Positives = 58/134 (43%), Gaps = 13/134 (9%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            V    + L+   +  TT  YP  +    PR RG  AL      EE C  C LC   CP 
Sbjct: 12  LVKGLAVTLKTMTRRSTTQQYPDVEPELPPRSRGVIALL-----EENCTVCMLCARECPD 66

Query: 76  QAITIESGPRC--------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
             I I+S                    ++DID   C+YCG+C E CP DA+   P FE+A
Sbjct: 67  WCIYIDSHKEEVAVPGAARPRQRNVLDKFDIDFSLCMYCGICVEVCPFDALYWSPEFEYA 126

Query: 128 TETRQELYYDKERL 141
               + L +DK+ L
Sbjct: 127 EYDIKNLLHDKDHL 140


>gi|302870008|ref|YP_003838645.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Micromonospora aurantiaca ATCC 27029]
 gi|302572867|gb|ADL49069.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Micromonospora aurantiaca ATCC 27029]
          Length = 196

 Score =  106 bits (265), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 44/134 (32%), Positives = 58/134 (43%), Gaps = 13/134 (9%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            V    + L+   +  TT  YP  +    PR RG  AL      EE C  C LC   CP 
Sbjct: 12  LVKGLAVTLKTMTRRSTTQQYPDVEPELPPRSRGVIALL-----EENCTVCMLCARECPD 66

Query: 76  QAITIESGPRC--------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
             I I+S                    ++DID   C+YCG+C E CP DA+   P FE+A
Sbjct: 67  WCIYIDSHKEEVAVPGAARPRQRNVLDKFDIDFSLCMYCGICVEVCPFDALYWSPEFEYA 126

Query: 128 TETRQELYYDKERL 141
               + L +DK+ L
Sbjct: 127 EYDIKNLLHDKDHL 140


>gi|254423733|ref|ZP_05037451.1| NADH-plastoquinone oxidoreductase, I subunit [Synechococcus sp. PCC
           7335]
 gi|196191222|gb|EDX86186.1| NADH-plastoquinone oxidoreductase, I subunit [Synechococcus sp. PCC
           7335]
          Length = 212

 Score =  106 bits (265), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 +   +  +   T+ YP+EK   S R+RG            +CIAC++C  +CP 
Sbjct: 22  IGQGLSVTFDHMKRRPVTVQYPYEKVIPSERYRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +    Y ID   CI+CG C E CP + +     +E +   R +L 
Sbjct: 77  NLPVVDWEFNKAAKKKVLNHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSAYDRHDLN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|113955570|ref|YP_731812.1| NADH dehydrogenase subunit I [Synechococcus sp. CC9311]
 gi|123327562|sp|Q0I6W0|NDHI_SYNS3 RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|113882921|gb|ABI47879.1| NADH-plastoquinone oxidoreductase, I subunit [Synechococcus sp.
           CC9311]
          Length = 219

 Score =  106 bits (265), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 +   +  +   T+ YP+EK   S R+RG           ++CIAC++C  +CP 
Sbjct: 22  LTQGLSVTFDHMKRRPVTVQYPYEKLIPSERYRGRI-----HYEFDKCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +    Y ID   CI+CG C E CP + +     +E A   R  L 
Sbjct: 77  NLPVVDWVMNKETKKKELRNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAFDRHSLN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|325277470|ref|ZP_08143076.1| NADH dehydrogenase subunit I [Pseudomonas sp. TJI-51]
 gi|324097399|gb|EGB95639.1| NADH dehydrogenase subunit I [Pseudomonas sp. TJI-51]
          Length = 141

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/103 (45%), Positives = 62/103 (60%), Gaps = 1/103 (0%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
             PR+RG   L R P+GEERC+AC LC   CP   I+++      DG      + I+  +
Sbjct: 1   MPPRYRGRIVLTRDPDGEERCVACNLCAVACPVGCISLQKAE-TEDGRWYPEFFRINFSR 59

Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNG 145
           CI+CGLC+EACP  AI   P+FE A   RQ+L Y+KE LL +G
Sbjct: 60  CIFCGLCEEACPTTAIQLTPDFEMAEFKRQDLVYEKEDLLISG 102


>gi|120538|sp|Q00236|NDHI_PLEBO RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|216819|dbj|BAA00815.1| NADH-ubiquinone oxidoreductase 23 kDa subunit homolog [Leptolyngbya
           boryana IAM M-101]
          Length = 194

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 +   +  +   T+ YP+EK   S RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGLSVTFDHMRRRPITVQYPYEKLILSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         ++   Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  NLPVVDWEFNKETKKKKLNHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|254496130|ref|ZP_05109029.1| NADH dehydrogenase I, truncated I subunit [Legionella drancourtii
           LLAP12]
 gi|254354671|gb|EET13307.1| NADH dehydrogenase I, truncated I subunit [Legionella drancourtii
           LLAP12]
          Length = 113

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 68/114 (59%), Positives = 78/114 (68%), Gaps = 1/114 (0%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
             ALRRYPNGEERCIACKLCEA+CPA AITIES PR  DG+RRT RYDIDM KCI CGLC
Sbjct: 1   MLALRRYPNGEERCIACKLCEAVCPALAITIESEPR-EDGSRRTTRYDIDMFKCINCGLC 59

Query: 110 QEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           +E+CPVD+IV  P   +    R +    KE+LL  GD  E  +  +   D  YR
Sbjct: 60  EESCPVDSIVVTPIHHYHISERGQNIMTKEKLLALGDLMEPRLAADRAADEKYR 113


>gi|260434445|ref|ZP_05788415.1| NADH-plastoquinone oxidoreductase, i subunit [Synechococcus sp. WH
           8109]
 gi|260412319|gb|EEX05615.1| NADH-plastoquinone oxidoreductase, i subunit [Synechococcus sp. WH
           8109]
          Length = 215

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F +   +  +   T+ YP+EK   S R+RG           ++CIAC++C  +CP 
Sbjct: 22  LAQGFSVTFDHMQRRPVTVQYPYEKLIPSERYRGRI-----HYEFDKCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +    Y ID   CI+CG C E CP + +     +E A   R  L 
Sbjct: 77  NLPVVDWVMNKATKKKELRNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAFDRHSLN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|297192748|ref|ZP_06910146.1| NADH-quinone oxidoreductase subunit I 2 [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|197721065|gb|EDY64973.1| NADH-quinone oxidoreductase subunit I 2 [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 241

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 56/139 (40%), Gaps = 14/139 (10%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
                   + LR   K   T  YP  +    PR RG   L      EE C  C LC   C
Sbjct: 7   SGLAKGLAVTLRTMTKKTVTAQYPDVQPELPPRSRGVIGLF-----EENCTVCMLCAREC 61

Query: 74  PAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           P   I I+S                     R+ ID   C+YCG+C E CP DA+   P F
Sbjct: 62  PDWCIYIDSHKETVPAAVPGGRERSRNVLDRFAIDFSLCMYCGICIEVCPFDALFWSPEF 121

Query: 125 EFATETRQELYYDKERLLN 143
           E+A    ++L +++++L  
Sbjct: 122 EYAETDIRDLTHERDKLRE 140


>gi|89095638|ref|ZP_01168532.1| NADH dehydrogenase subunit I [Bacillus sp. NRRL B-14911]
 gi|89089384|gb|EAR68491.1| NADH dehydrogenase subunit I [Bacillus sp. NRRL B-14911]
          Length = 139

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 45/136 (33%), Positives = 57/136 (41%), Gaps = 7/136 (5%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           +          L    + K T NYP E      RFRG           E+CI C  C  I
Sbjct: 1   MLGLAKGLKYTLSNLARKKVTYNYPKEPLPLPDRFRGIQKFY-----PEKCIVCNQCANI 55

Query: 73  CPAQAI--TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
           CP   I  T +  P      +    YDI+   CI C LC E CP +AI+   NFE A  +
Sbjct: 56  CPTDCIQLTGKKHPDPAKKGKIIDTYDINFEICILCDLCTEVCPTEAIIMTNNFELAEYS 115

Query: 131 RQELYYDKERLLNNGD 146
           R EL+ + E L  N +
Sbjct: 116 RDELFKNLEWLDENDE 131


>gi|237752484|ref|ZP_04582964.1| NADH-quinone oxidoreductase subunit I [Helicobacter winghamensis
           ATCC BAA-430]
 gi|229375973|gb|EEO26064.1| NADH-quinone oxidoreductase subunit I [Helicobacter winghamensis
           ATCC BAA-430]
          Length = 218

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 58/169 (34%), Positives = 78/169 (46%), Gaps = 8/169 (4%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKT-TINYPFEKGSTSPRFRGEHAL-RRYPNG 59
           + F    +     E     +L  +   KA+  T+ YP EK   S R+R  H L R   +G
Sbjct: 18  QKFVRFWNRALKGELFVGLWLVFKELCKAQIHTVQYPLEKLPLSSRYRAVHELKRLLDSG 77

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            ERCI C LCE IC A  I +E+     D  +    Y I+  +CIYCGLC E CP  AIV
Sbjct: 78  NERCIGCGLCEKICVANCIRMETS-YGEDKRKAVTEYSINFGRCIYCGLCAEVCPELAIV 136

Query: 120 EGPNFEFATETRQELYYDKERLLNN-----GDRWESEIVRNIVTDSPYR 163
            G  +E A E R      K+ L        G+  E + V ++  D+  R
Sbjct: 137 HGGRYENACEQRASFALKKDMLTPIEKVLSGNDCEFDGVGSVSVDADRR 185


>gi|152977482|ref|YP_001376999.1| NADH dehydrogenase subunit I [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|152026234|gb|ABS24004.1| NADH-quinone oxidoreductase, chain I [Bacillus cytotoxicus NVH
           391-98]
          Length = 139

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 44/141 (31%), Positives = 58/141 (41%), Gaps = 7/141 (4%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           +K  +      L    K K T +YP +      RFRG           E+CI C  C  I
Sbjct: 1   MKGLLKGLKYTLSNLSKKKVTYDYPNQPLPLPDRFRGIQKFY-----PEKCIVCNQCANI 55

Query: 73  CPAQAITIESGPRCHD--GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
           CP   I +            +    YDI+   CI C LC E CP +AIV   NFE A  T
Sbjct: 56  CPTNCIQLTGKKHPDPTKKGKIIDTYDINFEICILCDLCTEVCPTEAIVMTNNFELAEYT 115

Query: 131 RQELYYDKERLLNNGDRWESE 151
           R +L+ + + L  N +    E
Sbjct: 116 RDDLFKNLQWLDENDENVRKE 136


>gi|228994014|ref|ZP_04153916.1| NADH-quinone oxidoreductase, chain I [Bacillus pseudomycoides DSM
           12442]
 gi|229000083|ref|ZP_04159653.1| NADH-quinone oxidoreductase, chain I [Bacillus mycoides Rock3-17]
 gi|229007602|ref|ZP_04165197.1| NADH-quinone oxidoreductase, chain I [Bacillus mycoides Rock1-4]
 gi|228753740|gb|EEM03183.1| NADH-quinone oxidoreductase, chain I [Bacillus mycoides Rock1-4]
 gi|228759620|gb|EEM08596.1| NADH-quinone oxidoreductase, chain I [Bacillus mycoides Rock3-17]
 gi|228765812|gb|EEM14464.1| NADH-quinone oxidoreductase, chain I [Bacillus pseudomycoides DSM
           12442]
          Length = 139

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 46/141 (32%), Positives = 59/141 (41%), Gaps = 7/141 (4%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           +K         L    K K T +YP +      RFRG           E+CI C  C  I
Sbjct: 1   MKGLFKGLKYTLSNLSKKKVTYDYPNQPLPLPDRFRGIQKFY-----PEKCIVCNQCANI 55

Query: 73  CPAQAI--TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
           CP   I  T +  P      +    YDI+   CI C LC E CP +AIV   NFE A  T
Sbjct: 56  CPTDCIQLTGKKHPDPAKKGKIIDTYDINFEICILCDLCTEVCPTEAIVMTNNFELAEYT 115

Query: 131 RQELYYDKERLLNNGDRWESE 151
           R +L+ + + L  N +    E
Sbjct: 116 RDDLFKNLQWLDENDENVRKE 136


>gi|282897414|ref|ZP_06305416.1| NADH-plastoquinone oxidoreductase, subunit I [Raphidiopsis brookii
           D9]
 gi|281198066|gb|EFA72960.1| NADH-plastoquinone oxidoreductase, subunit I [Raphidiopsis brookii
           D9]
          Length = 194

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 +   +  +   T+ YP+EK     RFRG           ++CIAC++C  +CP 
Sbjct: 22  IGQGLAVTFDHMQRRPVTVQYPYEKLIPGERFRGRI-----HYEFDKCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         ++   Y ID   CI+CG C E CP + +     +E AT  R EL 
Sbjct: 77  NLPVVDWEMDKATKKKKLKHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELATYDRHELN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|126659017|ref|ZP_01730158.1| NADH dehydrogenase subunit I [Cyanothece sp. CCY0110]
 gi|126619674|gb|EAZ90402.1| NADH dehydrogenase subunit I [Cyanothece sp. CCY0110]
          Length = 196

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 +   +  +   T+ YP+EK   S R+RG            +CIAC++C  +CP 
Sbjct: 22  IGQGLSVTFDHMRRRPVTVQYPYEKLIPSERYRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +    Y ID   CI+CG C E CP + +     +E A   R EL 
Sbjct: 77  NLPVVDWEFNKDAKKKELKHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAYDRHELN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|313681402|ref|YP_004059140.1| NADH dehydrogenase subunit i [Sulfuricurvum kujiense DSM 16994]
 gi|313154262|gb|ADR32940.1| NADH dehydrogenase subunit I [Sulfuricurvum kujiense DSM 16994]
          Length = 207

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 49/145 (33%), Positives = 71/145 (48%), Gaps = 4/145 (2%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKT-TINYPFEKGSTSPRFRGEHAL-RRYPNGEE 61
           F+  +      E     ++ LR   K    T+ YP EK    PR+R  H L R + +G E
Sbjct: 34  FKQVLKRALRGELFVGLWVVLREMIKFDIHTVQYPKEKLPIGPRYRAVHKLLRLWESGYE 93

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCI C LCE IC +  I +++     +  +    Y I++ +CI+CG C E CP  AIV G
Sbjct: 94  RCIGCGLCEKICISDCIRMDTRID-ENSRKEVTEYSINLGRCIFCGYCAEVCPELAIVHG 152

Query: 122 PNFEFATETRQELYYDKERLLNNGD 146
             +E A+E R      K+ +L   D
Sbjct: 153 QRYENASEQRAHFVI-KDDMLTPLD 176


>gi|88809899|ref|ZP_01125405.1| NADH dehydrogenase subunit I [Synechococcus sp. WH 7805]
 gi|88786283|gb|EAR17444.1| NADH dehydrogenase subunit I [Synechococcus sp. WH 7805]
          Length = 218

 Score =  105 bits (263), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 +   +  +   T+ YP+EK   S R+RG           ++CIAC++C  +CP 
Sbjct: 22  LTQGLAVTFDHMKRRPVTVQYPYEKLIPSERYRGRI-----HYEFDKCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +    Y ID   CI+CG C E CP + +     +E A   R  L 
Sbjct: 77  NLPVVDWVMNKETKKKELRNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAFDRHSLN 136

Query: 136 YD 137
           +D
Sbjct: 137 FD 138


>gi|282900717|ref|ZP_06308659.1| NADH-plastoquinone oxidoreductase, subunit I [Cylindrospermopsis
           raciborskii CS-505]
 gi|281194517|gb|EFA69472.1| NADH-plastoquinone oxidoreductase, subunit I [Cylindrospermopsis
           raciborskii CS-505]
          Length = 194

 Score =  105 bits (263), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 +   +  +   T+ YP+EK     RFRG           ++CIAC++C  +CP 
Sbjct: 22  IGQGLAVTFDHMQRRPVTVQYPYEKLIPGERFRGRI-----HYEFDKCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         ++   Y ID   CI+CG C E CP + +     +E AT  R EL 
Sbjct: 77  NLPVVDWEMDKATKKKKLKHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELATYDRHELN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|330470209|ref|YP_004407952.1| 4fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Verrucosispora maris AB-18-032]
 gi|328813180|gb|AEB47352.1| 4fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Verrucosispora maris AB-18-032]
          Length = 208

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/136 (33%), Positives = 58/136 (42%), Gaps = 13/136 (9%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
              V    + L+   K  TT  YP       PR RG  AL      EE C  C LC   C
Sbjct: 13  SGLVKGLAVTLKTMTKRSTTQQYPDVAPELPPRSRGVIALL-----EENCTVCMLCSREC 67

Query: 74  PAQAITIESGPRC--------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           P   I I+S                    R+DID   C+YCG+C E CP DA+   P FE
Sbjct: 68  PDWCIYIDSHKEEVAVPGAARPRQRNVLDRFDIDFSLCMYCGICIEVCPFDALYWSPEFE 127

Query: 126 FATETRQELYYDKERL 141
           +A    ++L +DK+ L
Sbjct: 128 YAEYDIKDLLHDKDHL 143


>gi|108796796|ref|YP_636373.1| NADH dehydrogenase subunit I [Staurastrum punctulatum]
 gi|110287708|sp|Q32S03|NDHI_STAPU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|61393564|gb|AAX45705.1| 18 kDa subunit of NADH-plastoquinone oxidoreductase [Staurastrum
           punctulatum]
          Length = 181

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               FF+ L +  +   TI YP+EK   S RFRG            +CIAC++C  +CP 
Sbjct: 19  IGQGFFVTLDHMNRTPITIQYPYEKLIPSERFRGRIHFEFD-----KCIACEVCVRVCPI 73

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++   +     ++   Y ID   CI+CG C E CP + +     +E ++  R EL 
Sbjct: 74  NLPVVDWEFQKSMKKKQLKSYSIDFGVCIFCGNCVEFCPTNCLSMTEEYELSSYDRHELN 133

Query: 136 YD 137
           YD
Sbjct: 134 YD 135


>gi|124024945|ref|YP_001014061.1| NADH dehydrogenase subunit I [Prochlorococcus marinus str. NATL1A]
 gi|156632623|sp|A2BZY6|NDHI_PROM1 RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|123960013|gb|ABM74796.1| putative NADH Dehydrogenase subunit [Prochlorococcus marinus str.
           NATL1A]
          Length = 218

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            V    +   +  +   T+ YP+EK   S R+RG           ++CIAC++C  +CP 
Sbjct: 22  LVDGLGVTFDHMRRRPVTVQYPYEKLIPSERYRGRI-----HYEFDKCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +    Y ID   CI+CG C E CP + +     +E +   R  L 
Sbjct: 77  NLPVVDWVMNKETKKKELRNYSIDFGACIFCGNCVEYCPTNCLSMTEEYELSAFDRHSLN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|11467871|ref|NP_050922.1| NADH dehydrogenase subunit I [Nephroselmis olivacea]
 gi|75274741|sp|Q9TKV4|NDHI_NEPOL RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|5880800|gb|AAD54893.1|AF137379_116 subunit I of NADH-plastoquinoneoxidoreductase [Nephroselmis
           olivacea]
          Length = 173

 Score =  105 bits (263), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F +   +  +   TI+YP+EK   S RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFGVTFDHMSRRPITIHYPYEKLIPSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++   +     ++   Y ID   CI+CG C E CP + +     +E +   R EL 
Sbjct: 77  NLPVVDWDYQKSVKKKQLRSYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSVYDRHELN 136

Query: 136 YD 137
           +D
Sbjct: 137 FD 138


>gi|320106211|ref|YP_004181801.1| NADH-quinone oxidoreductase subunit I [Terriglobus saanensis
           SP1PR4]
 gi|319924732|gb|ADV81807.1| NADH-quinone oxidoreductase, chain I [Terriglobus saanensis SP1PR4]
          Length = 167

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/140 (35%), Positives = 65/140 (46%), Gaps = 10/140 (7%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTS-----PRFRGEHALRRYPNGEERCIACK 67
           +        +  +   +     NYP   G         RFRG+H L+R  NG E+C+AC 
Sbjct: 7   IAGIAKGMSITFKEMLQPTEVENYPDGPGPMRGAKFQERFRGKHQLQRDENGLEKCVACF 66

Query: 68  LCEAICPAQAITIESGPRCHDGT-----RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           LC A CP+  I IE+     +       R    Y+ID  +CI+CG C EACP DAI  G 
Sbjct: 67  LCAAACPSNCIYIEAAENTEEVRISSAERYAKVYNIDYNRCIFCGYCVEACPTDAITHGH 126

Query: 123 NFEFATETRQELYYDKERLL 142
            FE A+     L   KE +L
Sbjct: 127 GFELASLNATNLVMRKEDML 146


>gi|219848531|ref|YP_002462964.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Chloroflexus aggregans DSM 9485]
 gi|219542790|gb|ACL24528.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chloroflexus
           aggregans DSM 9485]
          Length = 426

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 39/141 (27%), Positives = 54/141 (38%), Gaps = 15/141 (10%)

Query: 16  FVGAFFLCLRYF---FK---------AKTTINYPFEKGSTSPRFRGEHALRRYPN-GEER 62
            +    +  +++   FK            TI YP E+      +R    L      G E 
Sbjct: 31  LLRGMAVIWKHWKESFKLNRSYSQIHGTFTIQYPEERARIPETYRNMPILLYDDETGHEL 90

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVR--YDIDMIKCIYCGLCQEACPVDAIVE 120
           C +C  CE ICP Q I +        G        + I+   C+ CG C E CP DAI  
Sbjct: 91  CTSCFQCERICPPQVIHMTQAKDPATGKPVPAVAEFIIEYDACMSCGFCAEVCPFDAIKM 150

Query: 121 GPNFEFATETRQELYYDKERL 141
              FE +T+    L   KE+L
Sbjct: 151 DHEFELSTDDHARLTVHKEQL 171


>gi|301056762|ref|YP_003794973.1| NADH dehydrogenase subunit I [Bacillus anthracis CI]
 gi|300378931|gb|ADK07835.1| NADH dehydrogenase subunit I [Bacillus cereus biovar anthracis str.
           CI]
          Length = 139

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 45/141 (31%), Positives = 59/141 (41%), Gaps = 7/141 (4%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           +K         L    K K T +YP +      RFRG           E+CI C  C  I
Sbjct: 1   MKGLFKGLKYTLSNLSKKKVTYDYPNQPLPLPDRFRGIQKFY-----PEKCIVCNQCSNI 55

Query: 73  CPAQAI--TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
           CP   I  T +  P      +    YDI+   CI C LC E CP +AIV   NFE A  +
Sbjct: 56  CPTDCIQLTGKKHPNPTKKGKIIDTYDINFEICILCDLCTEVCPTEAIVMTNNFELAEYS 115

Query: 131 RQELYYDKERLLNNGDRWESE 151
           R +L+ + + L  N +    E
Sbjct: 116 RDDLFKNLQWLDENDENVRKE 136


>gi|172037138|ref|YP_001803639.1| NADH dehydrogenase subunit I [Cyanothece sp. ATCC 51142]
 gi|254767211|sp|B1WPK3|NDHI_CYAA5 RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|171698592|gb|ACB51573.1| NADH dehydrogenase subunit I [Cyanothece sp. ATCC 51142]
          Length = 196

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 +   +  +   T+ YP+EK   S R+RG            +CIAC++C  +CP 
Sbjct: 22  IGQGLSVTFDHMRRRPVTVQYPYEKLIPSERYRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +    Y ID   CI+CG C E CP + +     +E A   R EL 
Sbjct: 77  NLPVVDWEFNKDAKKKELKHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAYDRHELN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|157415787|ref|YP_001483043.1| NADH dehydrogenase subunit I [Campylobacter jejuni subsp. jejuni
           81116]
 gi|172047188|sp|A8FNM9|NUOI_CAMJ8 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|157386751|gb|ABV53066.1| NADH-quinone oxidoreductase, I subunit [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|307748426|gb|ADN91696.1| NADH-quinone oxidoreductase subunit I [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315931251|gb|EFV10221.1| NADH-quinone oxidoreductase, chain I family protein [Campylobacter
           jejuni subsp. jejuni 327]
          Length = 213

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 58/167 (34%), Positives = 80/167 (47%), Gaps = 13/167 (7%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKA--KTTINYPFEKGSTSPRFRGEHALRRY-PN 58
           + FR +V      E     F+ +R   K     TI YPFEK     R+R  H L R+  +
Sbjct: 23  QTFRRSVKL----ELFVGLFVMMRELLKRNNSATIKYPFEKVKLDNRYRAVHRLMRFIES 78

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ERCI C LCE IC +  I +E+     +G ++   Y I++ +CIYCG C E CP  AI
Sbjct: 79  ENERCIGCGLCEKICISNCIRMETSLD-ENGRKKVGNYSINLGRCIYCGFCAEVCPELAI 137

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRW----ESEIVRNIVTDSP 161
           V G  +E A E R    Y K+  L   D+     E E   ++  D+ 
Sbjct: 138 VHGTEYENAAEQRSYFGY-KQDFLTPIDKLKNQVEFEGAGSLRKDAD 183


>gi|254457275|ref|ZP_05070703.1| NADH-quinone oxidoreductase subunit i [Campylobacterales bacterium
           GD 1]
 gi|207086067|gb|EDZ63351.1| NADH-quinone oxidoreductase subunit i [Campylobacterales bacterium
           GD 1]
          Length = 204

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 4/149 (2%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKT-TINYPFEKGSTSPRFRGEHAL-RRYPNGEE 61
           F+  V   F  E     ++ +R   +    T+ YP EK    PR+R  H + R + +  E
Sbjct: 31  FKRAVKRTFRGELFVGLWVVMREMIRFDIHTVQYPEEKMPIGPRYRAVHEMKRLWESDAE 90

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCI C LCE IC +  I +E+     +  +    Y I++ +CI+CG C E CP  AI  G
Sbjct: 91  RCIGCGLCEKICISNCIRMET-KIDENSRKEVSEYTINLGRCIFCGYCAEVCPELAITHG 149

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWES 150
             +E A++ R+    D   +L   D+ ++
Sbjct: 150 GEYENASDQREHFV-DYAAMLTPLDKMKA 177


>gi|156598257|gb|ABU85392.1| NADH-plastoquinone oxidoreductase subunit I [Ginkgo biloba]
          Length = 183

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 40/122 (32%), Positives = 56/122 (45%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK   S RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFIVTLYHMNRLPMTIQYPYEKLIPSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++       G +R   Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  NLPVVDWKFGEDIGKKRLENYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|72383362|ref|YP_292717.1| NADH dehydrogenase subunit I [Prochlorococcus marinus str. NATL2A]
 gi|110287704|sp|Q46HL4|NDHI_PROMT RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|72003212|gb|AAZ59014.1| NADH-plastoquinone oxidoreductase, subunit I:NADH-quinone
           oxidoreductase, chain I [Prochlorococcus marinus str.
           NATL2A]
          Length = 218

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            V    +   +  +   T+ YP+EK   S R+RG           ++CIAC++C  +CP 
Sbjct: 22  LVDGLGVTFDHMRRRPVTVQYPYEKLIPSERYRGRI-----HYEFDKCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +    Y ID   CI+CG C E CP + +     +E +   R  L 
Sbjct: 77  NLPVVDWVMNKETKKKELRNYSIDFGACIFCGNCVEYCPTNCLSMTEEYELSAFDRHSLN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|229076508|ref|ZP_04209470.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus Rock4-18]
 gi|229099728|ref|ZP_04230654.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus Rock3-29]
 gi|229105887|ref|ZP_04236513.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus Rock3-28]
 gi|229118791|ref|ZP_04248141.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus Rock1-3]
 gi|228664661|gb|EEL20153.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus Rock1-3]
 gi|228677546|gb|EEL31797.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus Rock3-28]
 gi|228683698|gb|EEL37650.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus Rock3-29]
 gi|228706694|gb|EEL58905.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus Rock4-18]
          Length = 139

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 43/141 (30%), Positives = 57/141 (40%), Gaps = 7/141 (4%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           +K         L    K K T +YP +      RFRG           E+CI C  C  I
Sbjct: 1   MKGLFKGLKYTLSNLSKKKVTYDYPNQPLPLPDRFRGIQKFY-----PEKCIVCNQCSNI 55

Query: 73  CPAQAITIESGPRCHD--GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
           CP   I +            +    YDI+   CI C LC E CP +AIV   NFE A  +
Sbjct: 56  CPTDCIQLTGKKHPDPTKKGKIIDTYDINFEICILCDLCTEVCPTEAIVMTNNFELAAYS 115

Query: 131 RQELYYDKERLLNNGDRWESE 151
           R +L+ + + L  N +    E
Sbjct: 116 RDDLFKNLQWLDENDENVRKE 136


>gi|75908927|ref|YP_323223.1| NADH dehydrogenase subunit I [Anabaena variabilis ATCC 29413]
 gi|110287695|sp|Q3M9K8|NDHI_ANAVT RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|75702652|gb|ABA22328.1| NADH-plastoquinone oxidoreductase, subunit I [Anabaena variabilis
           ATCC 29413]
          Length = 194

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 +   +  +   T+ YP+EK     RFRG           ++CIAC++C  +CP 
Sbjct: 22  IGQGLSVTFDHMRRRPVTVQYPYEKLIPGERFRGRI-----HYEFDKCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         ++   Y ID   CI+CG C E CP + +     +E AT  R EL 
Sbjct: 77  NLPVVDWEFDKATKKKKLNHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELATYDRHELN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|83815968|ref|YP_444641.1| NADH dehydrogenase i, i subunit [Salinibacter ruber DSM 13855]
 gi|83757362|gb|ABC45475.1| NADH dehydrogenase i, i subunit [Salinibacter ruber DSM 13855]
          Length = 202

 Score =  105 bits (262), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 1/123 (0%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
              T  YP E+      +RG   L    +   RC++C LC   CP  AI+++S    +  
Sbjct: 5   PTYTFEYPEEQWYPPDSYRGRPVLVE-EDDRPRCVSCNLCARACPPLAISMQSKEVNNVK 63

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWE 149
            R    ++I+M++CIYCG C+E CP +AIV     +   ++R E  +D + LL   ++ +
Sbjct: 64  EREPEWFEINMLRCIYCGFCEEVCPEEAIVMSKEHDLTFQSRDEAVFDLDDLLRPSEQMQ 123

Query: 150 SEI 152
             +
Sbjct: 124 DRL 126


>gi|196228499|ref|ZP_03127366.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Chthoniobacter flavus Ellin428]
 gi|196227902|gb|EDY22405.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Chthoniobacter flavus Ellin428]
          Length = 176

 Score =  105 bits (261), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/147 (33%), Positives = 74/147 (50%), Gaps = 12/147 (8%)

Query: 11  LFLKEFVGAFFLCLRYFFK-----AKTTINYPFEKGS--TSPRFRGEHALRRYPNGEERC 63
           ++L   V    + +++  +      K  + YP EK        +RG   L +  +  ERC
Sbjct: 16  IYLPSIVAGLAITIKHLKRMLKGETKVVMQYPEEKWDAHMPEHYRGAPTLVKDEHDRERC 75

Query: 64  IACKLCEAICPAQAITIESGP-----RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           +AC+LCE ICP +AITI         +     +R   ++IDMI+CIYCGLC+E CP  AI
Sbjct: 76  VACQLCEFICPPRAITITPEEIPAESKFAKVEKRPKEFEIDMIRCIYCGLCEEVCPEQAI 135

Query: 119 VEGPNFEFATETRQELYYDKERLLNNG 145
               ++     TR E+ +DK +L   G
Sbjct: 136 FLRKDYAITGTTRAEMKHDKAKLYELG 162


>gi|17227720|ref|NP_484268.1| NADH dehydrogenase subunit I [Nostoc sp. PCC 7120]
 gi|28201842|sp|Q9WWM6|NDHI_ANASP RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|5042149|emb|CAB44669.1| NDH-I protein [Nostoc sp. PCC 7120]
 gi|17135202|dbj|BAB77748.1| NADH dehydrogenase subunit I [Nostoc sp. PCC 7120]
          Length = 194

 Score =  105 bits (261), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 +   +  +   T+ YP+EK     RFRG           ++CIAC++C  +CP 
Sbjct: 22  IGQGLSVTFDHMRRRPVTVQYPYEKLIPGERFRGRI-----HYEFDKCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         ++   Y ID   CI+CG C E CP + +     +E AT  R EL 
Sbjct: 77  NLPVVDWEFDKATKKKKLNHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELATYDRHELN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|56750218|ref|YP_170919.1| NADH dehydrogenase subunit I [Synechococcus elongatus PCC 6301]
 gi|81300153|ref|YP_400361.1| NADH dehydrogenase subunit I [Synechococcus elongatus PCC 7942]
 gi|81596814|sp|Q5N5L9|NDHI_SYNP6 RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|110287711|sp|Q31NJ5|NDHI_SYNE7 RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|56685177|dbj|BAD78399.1| NADH dehydrogenase subunit NdhI [Synechococcus elongatus PCC 6301]
 gi|81169034|gb|ABB57374.1| NADH-plastoquinone oxidoreductase, I subunit NADH-quinone
           oxidoreductase, chain I [Synechococcus elongatus PCC
           7942]
          Length = 202

 Score =  105 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 36/124 (29%), Positives = 54/124 (43%), Gaps = 5/124 (4%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
           K       +   +  +   T+ YP+EK   S R+RG           ++CIAC++C  +C
Sbjct: 20  KAIGQGLGVTFDHMQRRPVTVQYPYEKLIPSERYRGRI-----HYEFDKCIACEVCVRVC 74

Query: 74  PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
           P     ++         +    Y ID   CI+CG C E CP + +     +E AT  R E
Sbjct: 75  PINLPVVDWVYNKETKKKDLKNYSIDFGACIFCGNCVEYCPTNCLSMTEEYELATYDRHE 134

Query: 134 LYYD 137
           L YD
Sbjct: 135 LNYD 138


>gi|30023328|ref|NP_834959.1| NADH dehydrogenase subunit I [Bacillus cereus ATCC 14579]
 gi|30265318|ref|NP_847695.1| NADH dehydrogenase subunit I [Bacillus anthracis str. Ames]
 gi|42784465|ref|NP_981712.1| NADH dehydrogenase subunit I [Bacillus cereus ATCC 10987]
 gi|47530856|ref|YP_022205.1| NADH dehydrogenase subunit I [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|47569790|ref|ZP_00240461.1| NADH-ubiquinone oxidoreductase, NQO9 subunit (NQO9) [Bacillus
           cereus G9241]
 gi|49188131|ref|YP_031384.1| NADH dehydrogenase subunit I [Bacillus anthracis str. Sterne]
 gi|49481261|ref|YP_039286.1| NADH dehydrogenase subunit I [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|52140266|ref|YP_086564.1| NADH dehydrogenase subunit I [Bacillus cereus E33L]
 gi|165869867|ref|ZP_02214524.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus anthracis str.
           A0488]
 gi|167636391|ref|ZP_02394691.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus anthracis str.
           A0442]
 gi|167641705|ref|ZP_02399949.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus anthracis str.
           A0193]
 gi|170689352|ref|ZP_02880546.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus anthracis str.
           A0465]
 gi|170708836|ref|ZP_02899271.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus anthracis str.
           A0389]
 gi|177654093|ref|ZP_02936103.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus anthracis str.
           A0174]
 gi|190567689|ref|ZP_03020601.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus anthracis
           Tsiankovskii-I]
 gi|196036330|ref|ZP_03103728.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus cereus W]
 gi|196039456|ref|ZP_03106761.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus cereus
           NVH0597-99]
 gi|196045657|ref|ZP_03112887.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus cereus
           03BB108]
 gi|206976926|ref|ZP_03237828.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus cereus
           H3081.97]
 gi|217962784|ref|YP_002341360.1| NADH dehydrogenase subunit I [Bacillus cereus AH187]
 gi|218231784|ref|YP_002370070.1| NADH dehydrogenase subunit I [Bacillus cereus B4264]
 gi|218900421|ref|YP_002448832.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus cereus G9842]
 gi|222098766|ref|YP_002532824.1| NADH dehydrogenase subunit i [Bacillus cereus Q1]
 gi|227818058|ref|YP_002818067.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus anthracis str.
           CDC 684]
 gi|228903769|ref|ZP_04067886.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis IBL
           4222]
 gi|228911135|ref|ZP_04074941.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis IBL
           200]
 gi|228924030|ref|ZP_04087306.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228942441|ref|ZP_04104979.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228949015|ref|ZP_04111288.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228955541|ref|ZP_04117545.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228968417|ref|ZP_04129410.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228975374|ref|ZP_04135930.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228982010|ref|ZP_04142304.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis Bt407]
 gi|228988519|ref|ZP_04148608.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|229014463|ref|ZP_04171581.1| NADH-quinone oxidoreductase, chain I [Bacillus mycoides DSM 2048]
 gi|229020513|ref|ZP_04177260.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus AH1273]
 gi|229026730|ref|ZP_04183067.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus AH1272]
 gi|229032926|ref|ZP_04188881.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus AH1271]
 gi|229050966|ref|ZP_04194516.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus AH676]
 gi|229072762|ref|ZP_04205962.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus F65185]
 gi|229082510|ref|ZP_04214973.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus Rock4-2]
 gi|229094404|ref|ZP_04225477.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus Rock3-42]
 gi|229112707|ref|ZP_04242243.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus Rock1-15]
 gi|229130546|ref|ZP_04259502.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus BDRD-Cer4]
 gi|229142034|ref|ZP_04270559.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus BDRD-ST26]
 gi|229147835|ref|ZP_04276177.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus BDRD-ST24]
 gi|229153459|ref|ZP_04281637.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus m1550]
 gi|229158855|ref|ZP_04286913.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus ATCC 4342]
 gi|229164240|ref|ZP_04292174.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus R309803]
 gi|229175968|ref|ZP_04303465.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus MM3]
 gi|229181543|ref|ZP_04308869.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus 172560W]
 gi|229193546|ref|ZP_04320491.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus ATCC 10876]
 gi|229199417|ref|ZP_04326082.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus m1293]
 gi|229602053|ref|YP_002869510.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus anthracis str.
           A0248]
 gi|254686282|ref|ZP_05150141.1| NADH dehydrogenase subunit I [Bacillus anthracis str. CNEVA-9066]
 gi|254724278|ref|ZP_05186062.1| NADH dehydrogenase subunit I [Bacillus anthracis str. A1055]
 gi|254735223|ref|ZP_05192932.1| NADH dehydrogenase subunit I [Bacillus anthracis str. Western North
           America USA6153]
 gi|254744427|ref|ZP_05202107.1| NADH dehydrogenase subunit I [Bacillus anthracis str. Kruger B]
 gi|254755731|ref|ZP_05207764.1| NADH dehydrogenase subunit I [Bacillus anthracis str. Vollum]
 gi|254759536|ref|ZP_05211561.1| NADH dehydrogenase subunit I [Bacillus anthracis str. Australia 94]
 gi|296505722|ref|YP_003667422.1| NADH dehydrogenase subunit I [Bacillus thuringiensis BMB171]
 gi|29898889|gb|AAP12160.1| NADH-quinone oxidoreductase chain I [Bacillus cereus ATCC 14579]
 gi|30259996|gb|AAP29181.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus anthracis str.
           Ames]
 gi|42740397|gb|AAS44320.1| NADH dehydrogenase I, I subunit [Bacillus cereus ATCC 10987]
 gi|47506004|gb|AAT34680.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus anthracis str.
           'Ames Ancestor']
 gi|47553532|gb|EAL11912.1| NADH-ubiquinone oxidoreductase, NQO9 subunit (NQO9) [Bacillus
           cereus G9241]
 gi|49182058|gb|AAT57434.1| NADH dehydrogenase I, I subunit [Bacillus anthracis str. Sterne]
 gi|49332817|gb|AAT63463.1| NADH dehydrogenase I, subunit I (NADH-quinone oxidoreductase, chain
           I) [Bacillus thuringiensis serovar konkukian str. 97-27]
 gi|51973735|gb|AAU15285.1| NADH dehydrogenase I, subunit I (NADH-quinone oxidoreductase, chain
           I) [Bacillus cereus E33L]
 gi|164714190|gb|EDR19710.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus anthracis str.
           A0488]
 gi|167510330|gb|EDR85732.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus anthracis str.
           A0193]
 gi|167528225|gb|EDR91007.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus anthracis str.
           A0442]
 gi|170126236|gb|EDS95128.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus anthracis str.
           A0389]
 gi|170666720|gb|EDT17489.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus anthracis str.
           A0465]
 gi|172080976|gb|EDT66055.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus anthracis str.
           A0174]
 gi|190561105|gb|EDV15078.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus anthracis
           Tsiankovskii-I]
 gi|195991122|gb|EDX55092.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus cereus W]
 gi|196023488|gb|EDX62165.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus cereus
           03BB108]
 gi|196029616|gb|EDX68218.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus cereus
           NVH0597-99]
 gi|206744892|gb|EDZ56297.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus cereus
           H3081.97]
 gi|217063581|gb|ACJ77831.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus cereus AH187]
 gi|218159741|gb|ACK59733.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus cereus B4264]
 gi|218544081|gb|ACK96475.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus cereus G9842]
 gi|221242825|gb|ACM15535.1| NADH dehydrogenase I, subunit I (NADH-quinone oxidoreductase, chain
           I) [Bacillus cereus Q1]
 gi|227003411|gb|ACP13154.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus anthracis str.
           CDC 684]
 gi|228584131|gb|EEK42284.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus m1293]
 gi|228589935|gb|EEK47809.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus ATCC 10876]
 gi|228601911|gb|EEK59406.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus 172560W]
 gi|228607562|gb|EEK64887.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus MM3]
 gi|228619262|gb|EEK76154.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus R309803]
 gi|228624839|gb|EEK81608.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus ATCC 4342]
 gi|228630063|gb|EEK86714.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus m1550]
 gi|228635663|gb|EEK92151.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus BDRD-ST24]
 gi|228641323|gb|EEK97629.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus BDRD-ST26]
 gi|228652885|gb|EEL08767.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus BDRD-Cer4]
 gi|228670839|gb|EEL26147.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus Rock1-15]
 gi|228689005|gb|EEL42831.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus Rock3-42]
 gi|228700942|gb|EEL53465.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus Rock4-2]
 gi|228710388|gb|EEL62362.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus F65185]
 gi|228722424|gb|EEL73819.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus AH676]
 gi|228728471|gb|EEL79492.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus AH1271]
 gi|228734578|gb|EEL85235.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus AH1272]
 gi|228740784|gb|EEL91035.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus AH1273]
 gi|228746813|gb|EEL96698.1| NADH-quinone oxidoreductase, chain I [Bacillus mycoides DSM 2048]
 gi|228771235|gb|EEM19712.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228777771|gb|EEM26044.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis Bt407]
 gi|228784356|gb|EEM32379.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228791276|gb|EEM38885.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228804163|gb|EEM50778.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228810771|gb|EEM57119.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228817282|gb|EEM63369.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228835520|gb|EEM80885.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228848498|gb|EEM93346.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis IBL
           200]
 gi|228855858|gb|EEN00401.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis IBL
           4222]
 gi|229266461|gb|ACQ48098.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus anthracis str.
           A0248]
 gi|296326774|gb|ADH09702.1| NADH dehydrogenase subunit I [Bacillus thuringiensis BMB171]
 gi|324329243|gb|ADY24503.1| NADH dehydrogenase subunit I [Bacillus thuringiensis serovar
           finitimus YBT-020]
 gi|326943093|gb|AEA18989.1| NADH dehydrogenase subunit I [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 139

 Score =  105 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/141 (30%), Positives = 57/141 (40%), Gaps = 7/141 (4%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           +K         L    K K T +YP +      RFRG           E+CI C  C  I
Sbjct: 1   MKGLFKGLKYTLSNLSKKKVTYDYPNQPLPLPDRFRGIQKFY-----PEKCIVCNQCSNI 55

Query: 73  CPAQAITIESGPRCHD--GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
           CP   I +            +    YDI+   CI C LC E CP +AIV   NFE A  +
Sbjct: 56  CPTDCIQLTGKKHPDPTKKGKIIDTYDINFEICILCDLCTEVCPTEAIVMTNNFELAEYS 115

Query: 131 RQELYYDKERLLNNGDRWESE 151
           R +L+ + + L  N +    E
Sbjct: 116 RDDLFKNLQWLDENDENVRKE 136


>gi|78183863|ref|YP_376297.1| NADH dehydrogenase subunit I [Synechococcus sp. CC9902]
 gi|110287712|sp|Q3B074|NDHI_SYNS9 RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|78168157|gb|ABB25254.1| NADH-plastoquinone oxidoreductase, subunit I [Synechococcus sp.
           CC9902]
          Length = 210

 Score =  105 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F +   +  +   T+ YP+EK   S R+RG           ++CIAC++C  +CP 
Sbjct: 22  LAQGFAVTFDHMQRRPVTVQYPYEKLIPSERYRGRI-----HYEFDKCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +    Y ID   CI+CG C E CP + +     +E A   R  L 
Sbjct: 77  NLPVVDWVMNKATKKKELRNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAFDRHSLN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|148243377|ref|YP_001228534.1| NADH dehydrogenase subunit I [Synechococcus sp. RCC307]
 gi|147851687|emb|CAK29181.1| NAD(P)H-quinone oxidoreductase subunit I [Synechococcus sp. RCC307]
          Length = 212

 Score =  105 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 +   +  +   T+ YP+EK   S R+RG           ++CIAC++C  +CP 
Sbjct: 35  IARGLSVTFDHLRRRPVTVQYPYEKLIPSERYRGRI-----HYEFDKCIACEVCVRVCPI 89

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +    Y ID   CI+CG C E CP + +     +E A   R  L 
Sbjct: 90  NLPVVDWVMNKATKKKELRNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAFDRHSLN 149

Query: 136 YD 137
           +D
Sbjct: 150 FD 151


>gi|163942983|ref|YP_001647867.1| NADH dehydrogenase subunit I [Bacillus weihenstephanensis KBAB4]
 gi|229063945|ref|ZP_04200244.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus AH603]
 gi|229136110|ref|ZP_04264864.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus BDRD-ST196]
 gi|229170002|ref|ZP_04297695.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus AH621]
 gi|163865180|gb|ABY46239.1| NADH-quinone oxidoreductase, chain I [Bacillus weihenstephanensis
           KBAB4]
 gi|228613520|gb|EEK70652.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus AH621]
 gi|228647355|gb|EEL03436.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus BDRD-ST196]
 gi|228716351|gb|EEL68061.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus AH603]
          Length = 139

 Score =  105 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/141 (30%), Positives = 57/141 (40%), Gaps = 7/141 (4%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           +K         L    K K T +YP +      RFRG           E+CI C  C  I
Sbjct: 1   MKGLFKGLKYTLSNLSKKKVTYDYPNQPLPLPDRFRGIQKFY-----PEKCIVCNQCSNI 55

Query: 73  CPAQAITIESGPRCHD--GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
           CP   I +            +    YDI+   CI C LC E CP +AIV   NFE A  +
Sbjct: 56  CPTDCIQLTGKKHPDPTKKGKIIDTYDINFEICILCDLCTEVCPTEAIVMTNNFELAEYS 115

Query: 131 RQELYYDKERLLNNGDRWESE 151
           R +L+ + + L  N +    E
Sbjct: 116 RDDLFKNLQWLDENDENIRKE 136


>gi|119485496|ref|ZP_01619824.1| NADH dehydrogenase subunit I [Lyngbya sp. PCC 8106]
 gi|119457252|gb|EAW38378.1| NADH dehydrogenase subunit I [Lyngbya sp. PCC 8106]
          Length = 202

 Score =  105 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 +   +  +   T+ YP+EK   S RFRG            +CI+C++C  +CP 
Sbjct: 22  IGQGLSVTFDHMRRRPITVQYPYEKLIPSERFRGRIHFEFD-----KCISCEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++      +  ++   Y ID   CI+CG C E CP + +     +E A   R EL 
Sbjct: 77  NLPVVDWEFNKANKKKQLKHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAYDRHELN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|297616447|ref|YP_003701606.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297144284|gb|ADI01041.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 248

 Score =  105 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 5/124 (4%)

Query: 11  LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70
           ++    +    +  ++FF  K T  YP E+    PRFRG   +       E+CI C +C 
Sbjct: 3   VYGTGLLKGLKVTFKHFFDRKLTEQYPEERPKLYPRFRGRLYI-----EPEKCIVCSICV 57

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
             CP   +++E G       +R + Y+ID   C++C LC E CP   +     FE+AT +
Sbjct: 58  RTCPNGVLSLEEGRDETAKKKRLLSYEIDHQYCMFCNLCVENCPAQCLHFNHEFEWATFS 117

Query: 131 RQEL 134
           R +L
Sbjct: 118 RDQL 121


>gi|116071525|ref|ZP_01468793.1| NADH dehydrogenase subunit I [Synechococcus sp. BL107]
 gi|116065148|gb|EAU70906.1| NADH dehydrogenase subunit I [Synechococcus sp. BL107]
          Length = 210

 Score =  105 bits (261), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F +   +  +   T+ YP+EK   S R+RG           ++CIAC++C  +CP 
Sbjct: 22  LAQGFAVTFDHMQRRPVTVQYPYEKLIPSERYRGRI-----HYEFDKCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +    Y ID   CI+CG C E CP + +     +E A   R  L 
Sbjct: 77  NLPVVDWVMNKATKKKELRNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAFDRHSLN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|330850679|ref|YP_004376560.1| NADH-plastoquinone oxidoreductase subunit I [Ptilidium
           pulcherrimum]
 gi|302024808|gb|ADK89654.1| NADH-plastoquinone oxidoreductase subunit I [Ptilidium
           pulcherrimum]
          Length = 183

 Score =  104 bits (260), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  ++  TI YP+EK   S RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMVTLDHMNRSPMTIQYPYEKLIPSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++   +     ++   Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  NLPVVDWELKKTMRKKQLKSYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|295697426|ref|YP_003590664.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Bacillus
           tusciae DSM 2912]
 gi|295413028|gb|ADG07520.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Bacillus
           tusciae DSM 2912]
          Length = 145

 Score =  104 bits (260), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 45/136 (33%), Positives = 57/136 (41%), Gaps = 7/136 (5%)

Query: 11  LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70
           +F    +    + L+   + K T  YP E  +   RFRG   L       E+CI C  C 
Sbjct: 1   MFGGGVLKGLTVTLKEMIRPKVTTRYPDETYTFPNRFRGIQKLY-----PEKCIVCNQCA 55

Query: 71  AICPAQAITIESGPRCHD--GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
            +CP Q ITI   P        +    ++I    CI C LC E CP +AIV    FE A 
Sbjct: 56  MVCPTQCITIRGKPHPDPAKKGKVLETFEIHFDTCILCDLCTEVCPTEAIVMTNQFELAE 115

Query: 129 ETRQELYYDKERLLNN 144
            TR  L  D   L  N
Sbjct: 116 YTRDALQKDMTWLTEN 131


>gi|283956943|ref|ZP_06374415.1| NADH-quinone oxidoreductase, I subunit [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283791444|gb|EFC30241.1| NADH-quinone oxidoreductase, I subunit [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 213

 Score =  104 bits (260), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 57/167 (34%), Positives = 79/167 (47%), Gaps = 13/167 (7%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKA--KTTINYPFEKGSTSPRFRGEHALRRY-PN 58
           +  R +V      E     F+ +R   K     TI YPFEK     R+R  H L R+  +
Sbjct: 23  QALRRSVKL----ELFVGLFVMMRELLKRNNSATIKYPFEKVKLDNRYRAVHRLMRFIES 78

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ERCI C LCE IC +  I +E+     +G ++   Y I++ +CIYCG C E CP  AI
Sbjct: 79  ENERCIGCGLCEKICISNCIRMETSLD-ENGRKKVGNYSINLGRCIYCGFCAEVCPELAI 137

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRW----ESEIVRNIVTDSP 161
           V G  +E A E R    Y K+  L   D+     E E   ++  D+ 
Sbjct: 138 VHGTEYENAAEQRSYFGY-KQDFLTPIDKLKNQVEFEGAGSLRKDAD 183


>gi|152990046|ref|YP_001355768.1| NADH dehydrogenase subunit I [Nitratiruptor sp. SB155-2]
 gi|151421907|dbj|BAF69411.1| NADH-quinone oxidoreductase, chain I [Nitratiruptor sp. SB155-2]
          Length = 203

 Score =  104 bits (260), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 51/150 (34%), Positives = 72/150 (48%), Gaps = 4/150 (2%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKT-TINYPFEKGSTSPRFRGEHAL-RRYPNGEE 61
           F+  +      E      + L    +    TI YP EK    PR+R  H L R   +G E
Sbjct: 32  FKRVLKRSVKLELFVGLRITLLEMIRFNIHTIQYPKEKLPIGPRYRAVHKLLRLLESGNE 91

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCI C LCE IC +  I I++     +G +    Y I+  +CI+CG C E CP  AIV G
Sbjct: 92  RCIGCGLCEKICISNCIRIDT-KVDENGRKIPTEYTINFGRCIFCGYCAEVCPELAIVHG 150

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESE 151
            ++E A+E R      KE +L   D+ + +
Sbjct: 151 QDYENASEQRAHFAL-KEDMLTPLDKLKEQ 179


>gi|218906472|ref|YP_002454306.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus cereus AH820]
 gi|225867272|ref|YP_002752650.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus cereus
           03BB102]
 gi|228917904|ref|ZP_04081440.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228930301|ref|ZP_04093307.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228936579|ref|ZP_04099374.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|229124798|ref|ZP_04253977.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus 95/8201]
 gi|229187520|ref|ZP_04314661.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus BGSC 6E1]
 gi|218536179|gb|ACK88577.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus cereus AH820]
 gi|225787244|gb|ACO27461.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus cereus
           03BB102]
 gi|228595959|gb|EEK53638.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus BGSC 6E1]
 gi|228658673|gb|EEL14334.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus 95/8201]
 gi|228823094|gb|EEM68931.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228829360|gb|EEM74991.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228841701|gb|EEM86812.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 139

 Score =  104 bits (260), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 43/141 (30%), Positives = 57/141 (40%), Gaps = 7/141 (4%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           +K         L    K K T +YP +      RFRG           E+CI C  C  I
Sbjct: 1   MKGLFKGLKYTLGNLSKKKVTYDYPNQPLPLPDRFRGIQKFY-----PEKCIVCNQCSNI 55

Query: 73  CPAQAITIESGPRCHD--GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
           CP   I +            +    YDI+   CI C LC E CP +AIV   NFE A  +
Sbjct: 56  CPTDCIQLTGKKHPDPTKKGKIIDTYDINFEICILCDLCTEVCPTEAIVMTNNFELAEYS 115

Query: 131 RQELYYDKERLLNNGDRWESE 151
           R +L+ + + L  N +    E
Sbjct: 116 RDDLFKNLQWLDENDENVRKE 136


>gi|307069587|ref|YP_003878064.1| putative NADH:ubiquinone oxidoreductase, chain I [Candidatus
           Zinderia insecticola CARI]
 gi|306482847|gb|ADM89718.1| putative NADH:ubiquinone oxidoreductase, chain I [Candidatus
           Zinderia insecticola CARI]
          Length = 164

 Score =  104 bits (260), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 55/134 (41%), Positives = 82/134 (61%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
            +  +  LFL + + A  +   + F  K T  YP EK   S +FRG HALR Y N + RC
Sbjct: 11  LKKKILNLFLIDILKALNITKYFLFSKKITNKYPIEKIPISKKFRGLHALRIYNNKKSRC 70

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           I+CKLCE++CPA AI I++G    +  R T+ Y I++ KCI+CGLC+ +CPV++IVE   
Sbjct: 71  ISCKLCESVCPANAINIKTGYNKKNNIRETIEYKINLKKCIFCGLCESSCPVNSIVEFNF 130

Query: 124 FEFATETRQELYYD 137
           FE+    + ++  +
Sbjct: 131 FEYCFFNKNKMILN 144


>gi|116073963|ref|ZP_01471225.1| NADH dehydrogenase subunit I [Synechococcus sp. RS9916]
 gi|116069268|gb|EAU75020.1| NADH dehydrogenase subunit I [Synechococcus sp. RS9916]
          Length = 214

 Score =  104 bits (260), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 +   +  +   T+ YP+EK   S R+RG           ++CIAC++C  +CP 
Sbjct: 22  LTQGLAVTFDHMKRRPVTVQYPYEKLIPSERYRGRI-----HYEFDKCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +    Y ID   CI+CG C E CP + +     +E A   R  L 
Sbjct: 77  NLPVVDWVMNKATKKKELRNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAFDRHSLN 136

Query: 136 YD 137
           +D
Sbjct: 137 FD 138


>gi|157165652|ref|YP_001466108.1| NADH dehydrogenase subunit I [Campylobacter concisus 13826]
 gi|112800556|gb|EAT97900.1| NADH-quinone oxidoreductase subunit i (nadhdehydrogenase i subunit
           i) (ndh-1 subunit i) [Campylobacter concisus 13826]
          Length = 212

 Score =  104 bits (260), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 46/164 (28%), Positives = 80/164 (48%), Gaps = 8/164 (4%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYF-FKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEE 61
           F+  ++  F  + +    + L+   F    T+ YP +K   + R+RG H L +   +  E
Sbjct: 22  FKHFIAATFKLDLLVGLKITLKQMLFSKSHTLKYPMQKMELNARYRGIHRLLKFVESENE 81

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCI C LCE IC +  I++++     DG ++   Y I++ +C+YCG C + CP  AIV G
Sbjct: 82  RCIGCGLCEKICVSNCISMKTSL-GEDGRKKVASYTINLSRCVYCGFCADVCPELAIVCG 140

Query: 122 PNFEFATETR-----QELYYDKERLLNNGDRWESEIVRNIVTDS 160
             +E A+E +     +  +   ++ L +   +E         DS
Sbjct: 141 QEYEVASENKILFGTKAEFLTDDKFLKDQAEFEGYGALPKNADS 184


>gi|300864218|ref|ZP_07109102.1| NAD(P)H-quinone oxidoreductase subunit I [Oscillatoria sp. PCC
           6506]
 gi|300337792|emb|CBN54248.1| NAD(P)H-quinone oxidoreductase subunit I [Oscillatoria sp. PCC
           6506]
          Length = 196

 Score =  104 bits (260), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 +   +  +   T+ YP+EK   S RFRG            +CI+C++C  +CP 
Sbjct: 22  IGQGLSVTFDHMSRRPITVQYPYEKLIPSERFRGRIHFEFD-----KCISCEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         ++   Y ID   CI+CG C E CP + +     +E A   R EL 
Sbjct: 77  NLPVVDWEFNKETKKKQLKHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAYERHELN 136

Query: 136 YD 137
           +D
Sbjct: 137 FD 138


>gi|313199667|ref|YP_004021283.1| NADH-plastoquinone oxidoreductase subunit I [Isoetes flaccida]
 gi|291575396|gb|ADE18109.1| NADH-plastoquinone oxidoreductase subunit I [Isoetes flaccida]
          Length = 186

 Score =  104 bits (260), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK   S RFRG            +CIAC++C  +CP 
Sbjct: 22  IGRGFMVTLDHMNRLPMTIQYPYEKLIPSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++   + +   ++   Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  NLPVVDWELKRNMKKKQLKSYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|317123873|ref|YP_004097985.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Intrasporangium calvum DSM 43043]
 gi|315587961|gb|ADU47258.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Intrasporangium calvum DSM 43043]
          Length = 329

 Score =  104 bits (260), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 45/138 (32%), Positives = 57/138 (41%), Gaps = 14/138 (10%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           L   V       R   +   T  YP       PR RG  AL      EE C +C LC   
Sbjct: 68  LPGLVKGLAATARTLTRHAHTAEYPDVMPKLPPRTRGVIALT-----EENCTSCMLCARE 122

Query: 73  CPAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           CP   I I+S                     R+ ID   C+YCG+C E CP DA+   P 
Sbjct: 123 CPDWCIYIDSHKEEIPATTEGGRARQRNVLDRFAIDFSLCMYCGICVEVCPFDALWWSPE 182

Query: 124 FEFATETRQELYYDKERL 141
           FE+A    +EL ++K+RL
Sbjct: 183 FEYAELDIRELVHEKDRL 200


>gi|284929388|ref|YP_003421910.1| NADH-plastoquinone oxidoreductase subunit I protein [cyanobacterium
           UCYN-A]
 gi|284809832|gb|ADB95529.1| NADH-plastoquinone oxidoreductase subunit I protein [cyanobacterium
           UCYN-A]
          Length = 197

 Score =  104 bits (260), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 +   +  +   T+ YP+EK   S R+RG        +  ++CIAC++C   CP 
Sbjct: 22  IGQGLSVTFDHMSRRPITVQYPYEKLIPSERYRGRI-----HHEFDKCIACEVCVRSCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               +       +  +    Y ID   CI+CG C E CP + +    ++E AT  R EL 
Sbjct: 77  NLPVVNWQFNKENKKKDLKDYSIDFGVCIFCGNCVEYCPTNCLSMTEDYELATYDRHELN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|37520223|ref|NP_923600.1| NADH dehydrogenase subunit I [Gloeobacter violaceus PCC 7421]
 gi|81711055|sp|Q7NMW1|NDHI_GLOVI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|35211216|dbj|BAC88595.1| NADH dehydrogenase subunit I [Gloeobacter violaceus PCC 7421]
          Length = 209

 Score =  104 bits (260), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 +   +  +   T+ YP+EK   S RFRG            +CI+C++C  +CP 
Sbjct: 22  IGQGMGVVFDHMRRKPVTVQYPYEKLIPSERFRGRIHF-----ERPKCISCEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +    Y ID   CI+CG C E CP   +     +E +   R EL 
Sbjct: 77  NLPVVDYEFNKETKKKELNSYSIDFGVCIFCGNCVEYCPTSCLSMTEEYELSVYDRHELN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|119513556|ref|ZP_01632573.1| NADH dehydrogenase subunit I [Nodularia spumigena CCY9414]
 gi|119461789|gb|EAW42809.1| NADH dehydrogenase subunit I [Nodularia spumigena CCY9414]
          Length = 197

 Score =  104 bits (259), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 +   +  +   T+ YP+EK     RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGLAVTFDHMQRRPVTVQYPYEKLIPGERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++      +  ++   Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  NLPVVDWEFEKANKKKKLKHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|87301843|ref|ZP_01084677.1| NADH dehydrogenase subunit I [Synechococcus sp. WH 5701]
 gi|87283411|gb|EAQ75366.1| NADH dehydrogenase subunit I [Synechococcus sp. WH 5701]
          Length = 203

 Score =  104 bits (259), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 +   +  +   T+ YP+EK   S R+RG           ++CI+C++C  +CP 
Sbjct: 22  ITQGLSVTFDHLRRRPITVQYPYEKLIPSERYRGRI-----HYEFDKCISCEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +    Y ID   CI+CG C E CP + +     +E A   R  L 
Sbjct: 77  NLPVVDWVMNKETKKKELKNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAFDRHSLN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|42524471|ref|NP_969851.1| NADH dehydrogenase I chain I [Bdellovibrio bacteriovorus HD100]
 gi|81697766|sp|Q6MIR9|NUOI_BDEBA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|39576680|emb|CAE80844.1| NADH dehydrogenase I chain I [Bdellovibrio bacteriovorus HD100]
          Length = 174

 Score =  104 bits (259), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 52/150 (34%), Positives = 74/150 (49%), Gaps = 9/150 (6%)

Query: 1   MRIFRCN--VSFLFLKEFVGAFFLCLRYFFK------AKTTINYPFEKGSTSPRFRGEHA 52
           M + + N   S  FL   +G     +++  K         T+NYP EK   SPRF+G H 
Sbjct: 1   MSVMQNNSEKSKWFLPGILGGLATTMKHLLKNLFNQKKMMTLNYPEEKYEYSPRFKGNHV 60

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGP-RCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           L    +G  RC AC LC   CPA+ I I +         +  + Y+ID+++C++CG C+E
Sbjct: 61  LTVKKDGSLRCTACMLCATNCPAECIKITAAEHNDPTVEKFPISYEIDILRCVFCGFCEE 120

Query: 112 ACPVDAIVEGPNFEFATETRQELYYDKERL 141
           ACPVDAI  GP ++          YD   L
Sbjct: 121 ACPVDAIRLGPEWQTPGVNGANFIYDINHL 150


>gi|159030037|emb|CAO90418.1| ndhI [Microcystis aeruginosa PCC 7806]
          Length = 190

 Score =  104 bits (259), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 +   +  +   T+ YP+EK   S R+RG            +CIAC++C  +CP 
Sbjct: 22  IGEGLSVTFDHMRRRPITVQYPYEKLIPSERYRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +    Y ID   CI+CG C E CP + +     +E AT  R EL 
Sbjct: 77  NLPVVDWTFNKEIKKKELKHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELATYDRHELN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|316962582|gb|EFV48695.1| NADH dehydrogenase I, I subunit [Trichinella spiralis]
          Length = 114

 Score =  104 bits (259), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 82/112 (73%), Positives = 87/112 (77%), Gaps = 1/112 (0%)

Query: 11  LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70
           +FL E + A       F K   TINYPFEKG  SPRFRGEHALRRYP+GEERCIACKLCE
Sbjct: 1   MFLSELIRALGHLFGSFLKEPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCE 60

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           AICPAQAITIE+  R   G+RRT RYDIDM KCIYCGLCQEACPVDAIVE  
Sbjct: 61  AICPAQAITIEAEERPD-GSRRTTRYDIDMCKCIYCGLCQEACPVDAIVEVN 111


>gi|145592966|ref|YP_001157263.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Salinispora tropica CNB-440]
 gi|145302303|gb|ABP52885.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Salinispora
           tropica CNB-440]
          Length = 216

 Score =  104 bits (259), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 44/134 (32%), Positives = 58/134 (43%), Gaps = 13/134 (9%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            V    + L+   +   T  YP    +  PR RG  AL      EE C  C LC   CP 
Sbjct: 25  LVKGLAVTLKTMTRRSATQQYPDVAPALPPRSRGVIALL-----EENCTVCMLCARECPD 79

Query: 76  QAITIESGPRCHD--------GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
             I I+S                    ++DID   C+YCG+C E CP DA+   P FE+A
Sbjct: 80  WCIYIDSHKEEVMVPGATRSRQRNVLDQFDIDFSLCMYCGICIEVCPFDALYWSPEFEYA 139

Query: 128 TETRQELYYDKERL 141
               ++L +DKE L
Sbjct: 140 EYDIKDLLHDKEHL 153


>gi|307721742|ref|YP_003892882.1| NADH dehydrogenase subunit I [Sulfurimonas autotrophica DSM 16294]
 gi|306979835|gb|ADN09870.1| NADH dehydrogenase subunit I [Sulfurimonas autotrophica DSM 16294]
          Length = 205

 Score =  104 bits (259), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 47/149 (31%), Positives = 73/149 (48%), Gaps = 4/149 (2%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFK-AKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEE 61
           F+  V   F  E     ++ LR   +    T+ YP EK    PR+R  H + R + +  E
Sbjct: 32  FKRVVKRSFKGELFVGLWVVLREMIRFDTHTVKYPEEKMPIGPRYRAVHEMKRLWESDTE 91

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCI C LCE IC +  I I++     +  +    Y I++ +CI+CG C E CP  AI  G
Sbjct: 92  RCIGCGLCEKICISDCIRIDTRID-ENSRKEVSEYTINLGRCIFCGYCAEVCPELAITHG 150

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWES 150
             +E A++ R+      E +L   D+ ++
Sbjct: 151 GEYENASDQREHFLL-FEDMLTPIDKMKA 178


>gi|298489904|ref|YP_003720081.1| NADH-plastoquinone oxidoreductase subunit I ['Nostoc azollae' 0708]
 gi|298231822|gb|ADI62958.1| NADH-plastoquinone oxidoreductase, I subunit ['Nostoc azollae'
           0708]
          Length = 194

 Score =  104 bits (259), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 +   +  +   T+ YP+EK     RFRG           ++CIAC++C  +CP 
Sbjct: 22  IGQGLSVTFDHMQRRPITVQYPYEKLIPGERFRGRI-----HYEFDKCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         ++   Y ID   CI+CG C E CP + +     +E A+  R EL 
Sbjct: 77  NLPVVDWEMDKATKKKKLKHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELASYDRHELN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|57238584|ref|YP_179715.1| NADH dehydrogenase subunit I [Campylobacter jejuni RM1221]
 gi|81675543|sp|Q5HSM0|NUOI_CAMJR RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|57167388|gb|AAW36167.1| NADH-quinone oxidoreductase, I subunit [Campylobacter jejuni
           RM1221]
 gi|315059021|gb|ADT73350.1| NADH-ubiquinone oxidoreductase chain I [Campylobacter jejuni subsp.
           jejuni S3]
          Length = 213

 Score =  104 bits (259), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 57/166 (34%), Positives = 79/166 (47%), Gaps = 13/166 (7%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKA--KTTINYPFEKGSTSPRFRGEHALRRY-PN 58
           +  R +V      E     F+ +R   K     TI YPFEK     R+R  H L R+  +
Sbjct: 23  QALRRSVKL----ELFVGLFVMMRELLKRNNSATIKYPFEKVKLDNRYRAVHRLMRFIES 78

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ERCI C LCE IC +  I +E+     +G ++   Y I++ +CIYCG C E CP  AI
Sbjct: 79  ENERCIGCGLCEKICISNCIRMETSLD-ENGRKKVGNYSINLGRCIYCGFCAEVCPELAI 137

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRW----ESEIVRNIVTDS 160
           V G  +E A E R    Y K+  L   D+     E E   ++  D+
Sbjct: 138 VHGTEYENAAEQRSYFGY-KQDFLTPIDKLKNQVEFEGAGSLRKDA 182


>gi|315930446|gb|EFV09510.1| NADH-quinone oxidoreductase, I subunit [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 213

 Score =  104 bits (259), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 57/166 (34%), Positives = 79/166 (47%), Gaps = 13/166 (7%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKA--KTTINYPFEKGSTSPRFRGEHALRRY-PN 58
           +  R +V      E     F+ +R   K     TI YPFEK     R+R  H L R+  +
Sbjct: 23  QALRRSVKL----ELFVGLFVMMRELLKRNNSATIKYPFEKVKLDNRYRAVHRLMRFIES 78

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ERCI C LCE IC +  I +E+     +G ++   Y I++ +CIYCG C E CP  AI
Sbjct: 79  ENERCIGCGLCEKICISNCIRMETSLD-ENGRKKVENYSINLGRCIYCGFCAEVCPELAI 137

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRW----ESEIVRNIVTDS 160
           V G  +E A E R    Y K+  L   D+     E E   ++  D+
Sbjct: 138 VHGTEYENAAEQRSYFGY-KQDFLTPIDKLKNQVEFEGAGSLRKDA 182


>gi|86152229|ref|ZP_01070440.1| NADH-quinone oxidoreductase, I subunit [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|88596340|ref|ZP_01099577.1| NADH-quinone oxidoreductase, I subunit [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|315124982|ref|YP_004066986.1| NADH-quinone oxidoreductase, I subunit [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|85840718|gb|EAQ57969.1| NADH-quinone oxidoreductase, I subunit [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|88191181|gb|EAQ95153.1| NADH-quinone oxidoreductase, I subunit [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|284926766|gb|ADC29118.1| NADH dehydrogenase I chain I [Campylobacter jejuni subsp. jejuni
           IA3902]
 gi|315018704|gb|ADT66797.1| NADH-quinone oxidoreductase, I subunit [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
          Length = 213

 Score =  104 bits (259), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 57/166 (34%), Positives = 79/166 (47%), Gaps = 13/166 (7%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKA--KTTINYPFEKGSTSPRFRGEHALRRY-PN 58
           +  R +V      E     F+ +R   K     TI YPFEK     R+R  H L R+  +
Sbjct: 23  QALRRSVKL----ELFVGLFVMMRELLKRNNSATIKYPFEKVKLDNRYRAVHRLMRFIES 78

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ERCI C LCE IC +  I +E+     +G ++   Y I++ +CIYCG C E CP  AI
Sbjct: 79  ENERCIGCGLCEKICISNCIRMETSLD-ENGRKKVENYSINLGRCIYCGFCAEVCPELAI 137

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRW----ESEIVRNIVTDS 160
           V G  +E A E R    Y K+  L   D+     E E   ++  D+
Sbjct: 138 VHGTEYENAAEQRSYFGY-KQDFLTPIDKLKNQVEFEGAGSLRKDA 182


>gi|166368385|ref|YP_001660658.1| NADH dehydrogenase subunit I [Microcystis aeruginosa NIES-843]
 gi|226724531|sp|B0JHQ4|NDHI_MICAN RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|166090758|dbj|BAG05466.1| NADH dehydrogenase subunit I [Microcystis aeruginosa NIES-843]
          Length = 190

 Score =  104 bits (259), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 +   +  +   T+ YP+EK   S R+RG            +CIAC++C  +CP 
Sbjct: 22  IGEGLSVTFDHMRRRPITVQYPYEKLIPSERYRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +    Y ID   CI+CG C E CP + +     +E A+  R EL 
Sbjct: 77  NLPVVDWTFNKEIKKKELKHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELASYDRHELN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|305432367|ref|ZP_07401529.1| NADH-quinone oxidoreductase subunit I [Campylobacter coli JV20]
 gi|304444406|gb|EFM37057.1| NADH-quinone oxidoreductase subunit I [Campylobacter coli JV20]
          Length = 221

 Score =  104 bits (259), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 53/154 (34%), Positives = 74/154 (48%), Gaps = 9/154 (5%)

Query: 15  EFVGAFFLCLRYFFKA--KTTINYPFEKGSTSPRFRGEHALRRY-PNGEERCIACKLCEA 71
           E     ++ +R   K     TI YPFEK     R+R  H L R+  +  ERCI C LCE 
Sbjct: 32  ELFVGLWVVMREMLKRNNSATIKYPFEKVKLDNRYRAVHRLMRFIESENERCIGCGLCEK 91

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           IC +  I +E+     +  ++   Y I++ +CIYCG C E CP  AIV G  +E A E R
Sbjct: 92  ICISNCIRMETSLD-ENARKKVGNYSINLGRCIYCGFCAEVCPELAIVHGTEYENAAEQR 150

Query: 132 QELYYDKERLLNNGDRW----ESEIVRNIVTDSP 161
               Y K+  L   D+     E E   ++  D+ 
Sbjct: 151 SYFGY-KQDFLTPIDKLKNQVEFEGAGSLRKDAD 183


>gi|113475270|ref|YP_721331.1| NADH dehydrogenase subunit I [Trichodesmium erythraeum IMS101]
 gi|123161032|sp|Q115G6|NDHI_TRIEI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|110166318|gb|ABG50858.1| NADH-plastoquinone oxidoreductase, I subunit [Trichodesmium
           erythraeum IMS101]
          Length = 209

 Score =  104 bits (259), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 +   +  +   T+ YP+EK   S RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGLSVTFDHMSRRPVTVQYPYEKLIPSERFRGRIHFEYD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         ++   Y ID   CI+CG C E CP + +     +E A   R EL 
Sbjct: 77  NLPVVDWEFNKETKKKKLKHYSIDFGVCIFCGNCVEYCPSNCLSMTEEYELAAYDRHELN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|254431184|ref|ZP_05044887.1| NADH-plastoquinone oxidoreductase, I subunit [Cyanobium sp. PCC
           7001]
 gi|197625637|gb|EDY38196.1| NADH-plastoquinone oxidoreductase, I subunit [Cyanobium sp. PCC
           7001]
          Length = 207

 Score =  104 bits (259), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 5/120 (4%)

Query: 18  GAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA 77
               +   +  +   T+ YP+EK   S R+RG           ++CIAC++C  +CP   
Sbjct: 24  QGLAVTFDHLRRRPVTVQYPYEKLIPSERYRGRI-----HYEFDKCIACEVCVRVCPINL 78

Query: 78  ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
             ++         +    Y ID   CI+CG C E CP + +     +E A   R  L YD
Sbjct: 79  PVVDWVMNKTTKKKELRNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAFDRHSLNYD 138


>gi|255535803|ref|YP_003096174.1| NADH-ubiquinone oxidoreductase chain I [Flavobacteriaceae bacterium
           3519-10]
 gi|255341999|gb|ACU08112.1| NADH-ubiquinone oxidoreductase chain I [Flavobacteriaceae bacterium
           3519-10]
          Length = 182

 Score =  104 bits (258), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 43/145 (29%), Positives = 72/145 (49%), Gaps = 8/145 (5%)

Query: 7   NVSFLFLKEFVGAFFLCLRYFFK--AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64
            +  ++L E +    + +++  +       +YP  +   +  +RG H L+R   G ERC 
Sbjct: 17  FMERIYLPEILKGMAITMKHALQGSKGKVFSYPEVEKPRAKVWRGLHVLKRDEEGRERCT 76

Query: 65  ACKLCEAICPAQAITIESGPRC------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           AC LC  +CPA+AIT+ S  R       +   +    Y+I+M++CI+CGLC+EACP  A+
Sbjct: 77  ACGLCAVVCPAEAITMTSAERTREEKHLYREEKYASVYEINMLRCIFCGLCEEACPKSAV 136

Query: 119 VEGPNFEFATETRQELYYDKERLLN 143
                       R    Y K++L+ 
Sbjct: 137 YLTDRLVDVEVNRGSFIYGKDKLVE 161


>gi|57168324|ref|ZP_00367458.1| NADH2 dehydrogenase (ubiquinone) I chain I Cj1571c [Campylobacter
           coli RM2228]
 gi|57020132|gb|EAL56806.1| NADH2 dehydrogenase (ubiquinone) I chain I Cj1571c [Campylobacter
           coli RM2228]
          Length = 221

 Score =  104 bits (258), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 53/154 (34%), Positives = 73/154 (47%), Gaps = 9/154 (5%)

Query: 15  EFVGAFFLCLRYFFKA--KTTINYPFEKGSTSPRFRGEHAL-RRYPNGEERCIACKLCEA 71
           E     ++ +R   K     TI YPFEK     R+R  H L R   +  ERCI C LCE 
Sbjct: 32  ELFVGLWVVMREMLKRNNSATIKYPFEKVKLDNRYRAVHRLMRFIESENERCIGCGLCEK 91

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           IC +  I +E+     +  ++   Y I++ +CIYCG C E CP  AIV G  +E A E R
Sbjct: 92  ICISNCIRMETSLD-ENARKKVGNYSINLGRCIYCGFCAEVCPELAIVHGTEYENAAEQR 150

Query: 132 QELYYDKERLLNNGDRW----ESEIVRNIVTDSP 161
               Y K+  L   D+     E E   ++  D+ 
Sbjct: 151 SYFGY-KQDFLTPIDKLKNQVEFEGAGSLRKDAD 183


>gi|86152969|ref|ZP_01071174.1| nadh dehydrogenase i chain i [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|85843854|gb|EAQ61064.1| nadh dehydrogenase i chain i [Campylobacter jejuni subsp. jejuni
           HB93-13]
          Length = 213

 Score =  104 bits (258), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 57/167 (34%), Positives = 79/167 (47%), Gaps = 13/167 (7%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKA--KTTINYPFEKGSTSPRFRGEHALRRY-PN 58
           +  R +V      E     F+ +R   K     TI YPFEK     R+R  H L R+  +
Sbjct: 23  QALRRSVKL----ELFIGLFVMMRELLKRNNSATIKYPFEKVKLDNRYRAVHRLMRFIES 78

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ERCI C LCE IC +  I +E+     +G ++   Y I++ +CIYCG C E CP  AI
Sbjct: 79  ENERCIGCGLCEKICISNCIRMETSLD-ENGRKKVGNYSINLGRCIYCGFCAEVCPELAI 137

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRW----ESEIVRNIVTDSP 161
           V G  +E A E R    Y K+  L   D+     E E   ++  D+ 
Sbjct: 138 VHGTEYENAAEQRSYFGY-KQDFLTPIDKLKNQVEFEGAGSLRKDAD 183


>gi|124302960|ref|YP_001023755.1| NADH dehydrogenase subunit I [Angiopteris evecta]
 gi|156632604|sp|A2T387|NDHI_ANGEV RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|110628358|gb|ABG79654.1| NADH-plastoquinone oxidoreductase subunit I [Angiopteris evecta]
          Length = 181

 Score =  104 bits (258), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK   S RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFVVTLDHMNRLPMTIQYPYEKLIPSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++   +     ++   Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  NLPVVDWELKESVRKKQLKNYSIDFAVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|295400699|ref|ZP_06810676.1| NADH-quinone oxidoreductase, chain I [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312112607|ref|YP_003990923.1| NADH-quinone oxidoreductase, chain I [Geobacillus sp. Y4.1MC1]
 gi|294977280|gb|EFG52881.1| NADH-quinone oxidoreductase, chain I [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311217708|gb|ADP76312.1| NADH-quinone oxidoreductase, chain I [Geobacillus sp. Y4.1MC1]
          Length = 139

 Score =  104 bits (258), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 44/134 (32%), Positives = 55/134 (41%), Gaps = 7/134 (5%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           +          L+   + K T +YP E      RFRG           E+CI C  C  I
Sbjct: 1   MIGLAKGLAYTLKNLAREKVTYDYPNEPLPLPDRFRGIQKFY-----PEKCIVCNQCANI 55

Query: 73  CPAQAI--TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
           CP   I  T +  P      +    Y I+   CI C LC E CP +AIV   NFE A  +
Sbjct: 56  CPTDCIQLTGKKHPDPAKKGKIIDTYSINFEICILCDLCTEVCPTEAIVMTNNFELAEYS 115

Query: 131 RQELYYDKERLLNN 144
           R +LY D   L  N
Sbjct: 116 RDDLYKDLAWLDEN 129


>gi|33239635|ref|NP_874577.1| NADH dehydrogenase subunit I [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|81712853|sp|Q7VE31|NDHI_PROMA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|33237160|gb|AAP99229.1| NAD(P)H-quinone oxidoreductase subunit I [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
          Length = 219

 Score =  104 bits (258), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +    +   +  +   T+ YP+EK   S R+RG           ++CIAC++C  +CP 
Sbjct: 22  LLQGLAVTFDHMRRRPITVQYPYEKLIPSERYRGRI-----HYEFDKCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +    Y ID   CI+CG C E CP + +     +E A   R  L 
Sbjct: 77  NLPVVDWVMNKETKKKELRNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAFDRHSLN 136

Query: 136 YD 137
           +D
Sbjct: 137 FD 138


>gi|228961558|ref|ZP_04123168.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|228798176|gb|EEM45179.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 139

 Score =  103 bits (257), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 43/141 (30%), Positives = 57/141 (40%), Gaps = 7/141 (4%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           +K         L    K K T +YP +      RFRG           E+CI C  C  I
Sbjct: 1   MKGLFNGLKYTLSNLSKKKVTYDYPNQPLPLPDRFRGIQKFY-----PEKCIVCNQCSNI 55

Query: 73  CPAQAITIESGPRCHD--GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
           CP   I +            +    YDI+   CI C LC E CP +AIV   NFE A  +
Sbjct: 56  CPTDCIQLTGKKHPDPTKKGKIIDTYDINFEICILCDLCTEVCPTEAIVMTNNFELAEYS 115

Query: 131 RQELYYDKERLLNNGDRWESE 151
           R +L+ + + L  N +    E
Sbjct: 116 RDDLFKNLQWLDENDENVRKE 136


>gi|22711918|ref|NP_683856.1| NADH dehydrogenase subunit I [Chaetosphaeridium globosum]
 gi|75302097|sp|Q8M9T7|NDHI_CHAGL RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|22416922|gb|AAM96522.1| subunit I of NADH-plastoquinone oxidoreductase [Chaetosphaeridium
           globosum]
          Length = 182

 Score =  103 bits (257), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 55/122 (45%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK   S RFRG            +CIAC++C  +CP 
Sbjct: 19  IGQGFTITLDHMNRLPVTIQYPYEKLIPSERFRGRIHFEFD-----KCIACEVCVRVCPI 73

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++   +     ++   Y ID   CI+CG C E CP + +     +E +   R EL 
Sbjct: 74  NLPVVDWEFQKSIKKKQLKSYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSVYDRHELN 133

Query: 136 YD 137
           YD
Sbjct: 134 YD 135


>gi|283824559|gb|ADB43092.1| predicted NADH dehydrogenase subunit I [uncultured marine phage]
          Length = 191

 Score =  103 bits (257), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +    + L +  +   T+ YP+EK   S R+RG           ++CIAC++C  +CP 
Sbjct: 19  LIDGLSVTLSHMGRRPVTVQYPYEKLIPSERYRGRI-----HYEFDKCIACEVCVRVCPI 73

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +    Y ID   CI+CG C E CP + +     +E +   R +L 
Sbjct: 74  NLPVVDWVMNKQTKKKELRNYSIDFGACIFCGNCVEYCPTNCLSMTEEYELSVFDRHQLN 133

Query: 136 YD 137
           YD
Sbjct: 134 YD 135


>gi|318040629|ref|ZP_07972585.1| NADH dehydrogenase subunit I [Synechococcus sp. CB0101]
          Length = 200

 Score =  103 bits (257), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 +   +  +   T+ YP+EK   S R+RG           ++CIAC++C  +CP 
Sbjct: 22  LTQGLSVTFDHLRRRPITVQYPYEKLIPSERYRGRI-----HYEFDKCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +    Y ID   CI+CG C E CP + +     +E A   R  L 
Sbjct: 77  NLPVVDWVMNKATKKKELRNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAFDRHSLN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|116624761|ref|YP_826917.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Candidatus Solibacter usitatus Ellin6076]
 gi|122252713|sp|Q01UN8|NUOI2_SOLUE RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName:
           Full=NADH dehydrogenase I subunit I 2; AltName:
           Full=NDH-1 subunit I 2
 gi|116227923|gb|ABJ86632.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 151

 Score =  103 bits (257), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 46/138 (33%), Positives = 69/138 (50%), Gaps = 2/138 (1%)

Query: 8   VSFLFLKEFVGAFFLCLRYF-FKAKTTINYPFEKGSTSPRFRGEHALRRYP-NGEERCIA 65
           +  +FL +     F+  R    K   T  YP E+   + R+RG   L   P NGE  CI+
Sbjct: 5   LKKIFLVDLFQGLFVTFRNQNPKYIYTEQYPAERPKVAERYRGAPRLNINPDNGETLCIS 64

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           C LC   CP   I + S        +  V +  D  +C++CGLC++ACPVDA+    +FE
Sbjct: 65  CNLCALACPENLIVVTSERSEVTKRKELVTFTYDTSRCMFCGLCEDACPVDALELTQDFE 124

Query: 126 FATETRQELYYDKERLLN 143
            A+ TR+   +D++ L  
Sbjct: 125 MASYTREGQIWDRQALEE 142


>gi|86149440|ref|ZP_01067671.1| NADH-quinone oxidoreductase, I subunit [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|121612213|ref|YP_001001211.1| NADH dehydrogenase subunit I [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167006104|ref|ZP_02271862.1| NADH dehydrogenase subunit I [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|218563160|ref|YP_002344940.1| NADH dehydrogenase subunit I [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|116248560|sp|Q0P857|NUOI_CAMJE RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|156633516|sp|A1W1H0|NUOI_CAMJJ RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|85840222|gb|EAQ57480.1| NADH-quinone oxidoreductase, I subunit [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|87249800|gb|EAQ72759.1| NADH-quinone oxidoreductase, I subunit [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|112360867|emb|CAL35668.1| NADH dehydrogenase I chain I [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|315927683|gb|EFV07014.1| NADH-quinone oxidoreductase, chain I family protein [Campylobacter
           jejuni subsp. jejuni DFVF1099]
          Length = 213

 Score =  103 bits (257), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 55/153 (35%), Positives = 75/153 (49%), Gaps = 9/153 (5%)

Query: 15  EFVGAFFLCLRYFFKA--KTTINYPFEKGSTSPRFRGEHALRRY-PNGEERCIACKLCEA 71
           E     F+ +R   K     TI YPFEK     R+R  H L R+  +  ERCI C LCE 
Sbjct: 32  ELFVGLFVMMRELLKRNNSATIKYPFEKVKLDNRYRAVHRLMRFIESENERCIGCGLCEK 91

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           IC +  I +E+     +G ++   Y I++ +CIYCG C E CP  AIV G  +E A E R
Sbjct: 92  ICISNCIRMETSLD-ENGRKKVENYSINLGRCIYCGFCAEVCPELAIVHGTEYENAAEQR 150

Query: 132 QELYYDKERLLNNGDRW----ESEIVRNIVTDS 160
               Y K+  L   D+     E E   ++  D+
Sbjct: 151 SYFGY-KQDFLTPIDKLKNQVEFEGAGSLRKDA 182


>gi|298489805|ref|YP_003719982.1| NADH-plastoquinone oxidoreductase subunit I ['Nostoc azollae' 0708]
 gi|298231723|gb|ADI62859.1| NADH-plastoquinone oxidoreductase, I subunit ['Nostoc azollae'
           0708]
          Length = 207

 Score =  103 bits (256), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 +   +  +   T+ YP+EK   S RFRG            +CI+C++C  +CP 
Sbjct: 22  IGQGLSVTFDHMNRRPITVQYPYEKLIPSERFRGRIHFEFD-----KCISCEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         ++   Y ID   CI+CG C E CP + I     ++  T  R EL 
Sbjct: 77  NLPVVDWEFDQETKKKKLNHYSIDFGVCIFCGNCVEFCPTNCISFTEEYDLCTYDRHELN 136

Query: 136 YD 137
            D
Sbjct: 137 LD 138


>gi|283953816|ref|ZP_06371347.1| NADH-quinone oxidoreductase, I subunit [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283794857|gb|EFC33595.1| NADH-quinone oxidoreductase, I subunit [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 213

 Score =  103 bits (256), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 57/167 (34%), Positives = 80/167 (47%), Gaps = 13/167 (7%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKA--KTTINYPFEKGSTSPRFRGEHALRRY-P 57
           ++  R +V      E     F+ +R   K     TI YPFEK     R+R  H L R+  
Sbjct: 22  LQALRRSVKL----ELFVGLFVMMRELLKRNNSATIKYPFEKVKLDNRYRAVHRLMRFIE 77

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           +  ERCI C LCE IC +  I +E+     +G ++   Y I++ +CIYCG C E CP  A
Sbjct: 78  SENERCIGCGLCEKICISNCIRMETSLD-ENGRKKVSNYSINLGRCIYCGFCAEVCPELA 136

Query: 118 IVEGPNFEFATETRQELYYDKERLLNNGDRW----ESEIVRNIVTDS 160
           IV G  +E A E R    Y K+  L   D+     E E   ++  D+
Sbjct: 137 IVHGTEYENAAEQRSYFGY-KQDFLTPIDKLKNQVEFEGAGSLRKDA 182


>gi|212640513|ref|YP_002317033.1| NADH dehydrogenase subunit I [Anoxybacillus flavithermus WK1]
 gi|212561993|gb|ACJ35048.1| NADH dehydrogenase subunit I [Anoxybacillus flavithermus WK1]
          Length = 139

 Score =  103 bits (256), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 44/134 (32%), Positives = 55/134 (41%), Gaps = 7/134 (5%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           +   +      L+   K K T +YP E      RFRG           E+CI C  C  I
Sbjct: 1   MLGLMKGLAYTLKNLTKEKVTYDYPNEPLPLPDRFRGIQKFY-----PEKCIVCNQCANI 55

Query: 73  CPAQAITIESGPRCHD--GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
           CP   I +            +    YDI+   CI C LC E CP +AIV   NFE A  +
Sbjct: 56  CPTDCIQLTGKKHPDPTKKGKIIDTYDINFEICILCDLCTEVCPTEAIVMTNNFELAEYS 115

Query: 131 RQELYYDKERLLNN 144
           R EL+ D   L  N
Sbjct: 116 RDELFKDLTWLDEN 129


>gi|296133532|ref|YP_003640779.1| NADH-quinone oxidoreductase, chain I [Thermincola sp. JR]
 gi|296032110|gb|ADG82878.1| NADH-quinone oxidoreductase, chain I [Thermincola potens JR]
          Length = 149

 Score =  103 bits (256), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 39/127 (30%), Positives = 60/127 (47%), Gaps = 6/127 (4%)

Query: 11  LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70
           +F +  +    + L++FF+ K T  YP E+ +   RF+G   L        +CIAC LC 
Sbjct: 1   MFGQGLIKGLSITLKHFFEKKITQQYPEERPNLPDRFKGSFKL-----NVPKCIACGLCA 55

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
             CP   I I S     D  ++   Y + + +C+YCG C E CP  A+     FE     
Sbjct: 56  NACPNHVIEITSEK-GEDKKKKLTGYKMMVERCLYCGFCVETCPTKALQWTKEFENTKFF 114

Query: 131 RQELYYD 137
           R+++  D
Sbjct: 115 REDVNLD 121


>gi|159902717|ref|YP_001550061.1| NADH dehydrogenase subunit I [Prochlorococcus marinus str. MIT
           9211]
 gi|226724532|sp|A9BD19|NDHI_PROM4 RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|159887893|gb|ABX08107.1| putative NADH Dehydrogenase subunit [Prochlorococcus marinus str.
           MIT 9211]
          Length = 215

 Score =  103 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +    +   +  +   T+ YP+EK   S R+RG           ++CIAC++C  +CP 
Sbjct: 22  LLQGLAVTFDHMGRRPITVQYPYEKLIPSERYRGRI-----HYEFDKCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +    Y ID   CI+CG C E CP + +     +E A   R  L 
Sbjct: 77  NLPVVDWVMNKETKKKELRNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAFDRHSLN 136

Query: 136 YD 137
           +D
Sbjct: 137 FD 138


>gi|163847543|ref|YP_001635587.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Chloroflexus aurantiacus J-10-fl]
 gi|222525393|ref|YP_002569864.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Chloroflexus sp. Y-400-fl]
 gi|163668832|gb|ABY35198.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chloroflexus
           aurantiacus J-10-fl]
 gi|222449272|gb|ACM53538.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chloroflexus
           sp. Y-400-fl]
          Length = 358

 Score =  103 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 38/152 (25%), Positives = 55/152 (36%), Gaps = 15/152 (9%)

Query: 14  KEFVGAFFLCLRYF---FK---------AKTTINYPFEKGSTSPRFRGEHALRRYPN-GE 60
              +    +  +++   F+            TI YP E+      +R    L      G 
Sbjct: 29  SGLLRGMAVIWKHWKESFRLNRSYRQIHGTFTIQYPEERPRIPETYRNMPILLYDDETGH 88

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR--YDIDMIKCIYCGLCQEACPVDAI 118
           E C +C  CE ICP Q I +        G        + I+   C+ CG C E CP DAI
Sbjct: 89  ELCTSCFQCERICPPQVIHMTQAKDPATGKPVPAVAEFIIEYDACMSCGFCAEVCPFDAI 148

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWES 150
                FE +T+    L   K +L      +E 
Sbjct: 149 KMDHEFELSTDDHSSLTVHKAQLNRPISYYEK 180


>gi|157736568|ref|YP_001489251.1| NADH-quinone oxidoreductase, I subunit [Arcobacter butzleri RM4018]
 gi|315635731|ref|ZP_07890994.1| NADH-quinone oxidoreductase subunit I [Arcobacter butzleri JV22]
 gi|157698422|gb|ABV66582.1| NADH-quinone oxidoreductase, I subunit [Arcobacter butzleri RM4018]
 gi|315480028|gb|EFU70698.1| NADH-quinone oxidoreductase subunit I [Arcobacter butzleri JV22]
          Length = 166

 Score =  103 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 47/149 (31%), Positives = 74/149 (49%), Gaps = 9/149 (6%)

Query: 5   RCNVSFLFLKEFVGAFFLCLRYFFKAKT------TINYPF-EKGSTSPRFRGEHALRRYP 57
           +     L+L    G      ++F K         T+ YP  +    + R+RG H L ++ 
Sbjct: 11  KSFKDRLYLPGIAGGMKTTFKHFVKNLKDVESINTLQYPEVQPTDITDRYRGVHRLTKFD 70

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRC-HDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           +G E+C+AC +C   CPA+ I IE+  R      +R   + ID+++C++CG C EACP D
Sbjct: 71  DGSEKCVACFMCATACPAECIFIEAEERFDEHNEKRPKEFKIDLLECVFCGYCVEACPCD 130

Query: 117 AIVE-GPNFEFATETRQELYYDKERLLNN 144
           AI      F F    R++   DK+ L+ N
Sbjct: 131 AIRMDTGIFSFTASKREDFVLDKKALMAN 159


>gi|148925719|ref|ZP_01809407.1| NADH dehydrogenase I chain I [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|205355586|ref|ZP_03222356.1| NADH dehydrogenase I chain I [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|145845729|gb|EDK22820.1| NADH dehydrogenase I chain I [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|205346363|gb|EDZ32996.1| NADH dehydrogenase I chain I [Campylobacter jejuni subsp. jejuni
           CG8421]
          Length = 213

 Score =  103 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 57/166 (34%), Positives = 79/166 (47%), Gaps = 13/166 (7%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKA--KTTINYPFEKGSTSPRFRGEHALRRY-PN 58
           +  R +V      E     F+ +R   K     TI YPFEK     R+R  H L R+  +
Sbjct: 23  QALRRSVKL----ELFVGLFVMMRELLKRNNSATIKYPFEKVKLDNRYRAVHRLMRFIES 78

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ERCI C LCE IC +  I +E+     +G ++   Y I++ +CIYCG C E CP  AI
Sbjct: 79  ENERCIGCGLCEKICISNCIRMETSLD-ENGRKKVGNYSINLGRCIYCGFCAEVCPELAI 137

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRW----ESEIVRNIVTDS 160
           V G  +E A E R    Y K+  L   D+     E E   ++  D+
Sbjct: 138 VHGIEYENAAEQRSYFGY-KQDFLTPIDKLKNQVEFEGAGSLRKDA 182


>gi|307327969|ref|ZP_07607150.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Streptomyces
           violaceusniger Tu 4113]
 gi|306886274|gb|EFN17279.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Streptomyces
           violaceusniger Tu 4113]
          Length = 233

 Score =  103 bits (256), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 57/139 (41%), Gaps = 14/139 (10%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
                   + LR   +   T  YP  +    PR RG   L      EE C  C LC   C
Sbjct: 6   SGLAKGLAVTLRTMTRKSHTAQYPDAQPELPPRTRGVIGLF-----EENCTVCMLCAREC 60

Query: 74  PAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           P   I I+S                     R+ ID   C+YCG+C E CP DA+   P F
Sbjct: 61  PDWCIYIDSHKETVPPAAPGGRERSRNVLDRFAIDFALCMYCGICIEVCPFDALFWSPEF 120

Query: 125 EFATETRQELYYDKERLLN 143
           E+A E  ++L +++++L  
Sbjct: 121 EYAEEDIRDLTHERDKLRE 139


>gi|290489750|gb|ADD31282.1| NADH-plastoquinone oxidoreductase subunit I protein [Antirrhinum
           majus]
          Length = 171

 Score =  102 bits (255), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETSIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|94968319|ref|YP_590367.1| 4Fe-4S ferredoxin, iron-sulfur binding [Candidatus Koribacter
           versatilis Ellin345]
 gi|123381597|sp|Q1IS57|NUOI1_ACIBL RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName:
           Full=NADH dehydrogenase I subunit I 1; AltName:
           Full=NDH-1 subunit I 1
 gi|94550369|gb|ABF40293.1| NADH dehydrogenase subunit I [Candidatus Koribacter versatilis
           Ellin345]
          Length = 152

 Score =  102 bits (255), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 1/135 (0%)

Query: 8   VSFLFLKEFVGAFFLCLRY-FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIAC 66
           +  +FL + +    +  +Y   K   T  YP E+   + RFRG+  ++   NGE  CI C
Sbjct: 7   LRKVFLIDLIKGLSITFKYQAPKDCQTEQYPQERPVITDRFRGQPMMKLGENGETLCIGC 66

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
            LC   CP   I ++S        +  V Y  D+ +C++CGLC+EACP  ++  G  +E 
Sbjct: 67  NLCALACPENLIAMKSDRDPVTKKKVMVTYVYDVSRCMFCGLCEEACPTQSLKLGTGYEM 126

Query: 127 ATETRQELYYDKERL 141
           A  +R+ +  D++ L
Sbjct: 127 ALYSREGMVLDRKVL 141


>gi|11466756|ref|NP_039352.1| NADH dehydrogenase subunit I [Marchantia polymorpha]
 gi|120536|sp|P06253|NDHI_MARPO RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|11727|emb|CAA28138.1| frxB [Marchantia polymorpha]
          Length = 183

 Score =  102 bits (255), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +  TTI YP+EK   S RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFLVTLDHMNRLPTTIQYPYEKLIPSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++   +     ++   Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  NLPVVDWELKKTIKKKQLKNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYNRHELN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|317968123|ref|ZP_07969513.1| NADH dehydrogenase subunit I [Synechococcus sp. CB0205]
          Length = 198

 Score =  102 bits (255), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 +   +  +   T+ YP+EK   S R+RG           ++CIAC++C  +CP 
Sbjct: 22  LAQGLSVTFDHLQRRPITVQYPYEKLIPSERYRGRI-----HYEFDKCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +    Y ID   CI+CG C E CP + +     +E A   R  L 
Sbjct: 77  NLPVVDWVMNKATKKKELRNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAFDRHSLN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|206942068|gb|ACI22631.1| NADH-plastoquinone oxidoreductase subunit I [Aneura pinguis]
          Length = 177

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/122 (32%), Positives = 56/122 (45%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK   S RFRG            +CIAC++C  +CP 
Sbjct: 18  IGQGFLVTLDHMNRFPITIQYPYEKLIPSERFRGRIHFEFD-----KCIACEVCVRVCPM 72

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++   R     +R   Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 73  NLPVVDWELRRTMRRKRLRSYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTHDRHELN 132

Query: 136 YD 137
           YD
Sbjct: 133 YD 134


>gi|153951035|ref|YP_001398853.1| NADH dehydrogenase subunit I [Campylobacter jejuni subsp. doylei
           269.97]
 gi|166918791|sp|A7H5S3|NUOI_CAMJD RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|152938481|gb|ABS43222.1| NADH-quinone oxidoreductase, I subunit [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 213

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 55/153 (35%), Positives = 75/153 (49%), Gaps = 9/153 (5%)

Query: 15  EFVGAFFLCLRYFFKA--KTTINYPFEKGSTSPRFRGEHALRRY-PNGEERCIACKLCEA 71
           E     F+ +R   K     TI YPFEK     R+R  H L R+  +  ERCI C LCE 
Sbjct: 32  ELFVGLFVMMRELLKRNNSATIKYPFEKVKLDNRYRAVHRLMRFIESENERCIGCGLCEK 91

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           IC +  I +E+     +G ++   Y I++ +CIYCG C E CP  AIV G  +E A E R
Sbjct: 92  ICISNCIRMETSLD-ENGRKKVGNYSINLGRCIYCGFCAEVCPELAIVHGIEYENAAEQR 150

Query: 132 QELYYDKERLLNNGDRW----ESEIVRNIVTDS 160
               Y K+  L   D+     E E   ++  D+
Sbjct: 151 SYFGY-KQDFLTPIDKLKNQVEFEGAGSLRKDA 182


>gi|329938295|ref|ZP_08287746.1| NADH dehydrogenase subunit NuoI2 [Streptomyces griseoaurantiacus
           M045]
 gi|329302784|gb|EGG46674.1| NADH dehydrogenase subunit NuoI2 [Streptomyces griseoaurantiacus
           M045]
          Length = 233

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 44/165 (26%), Positives = 61/165 (36%), Gaps = 26/165 (15%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
                   + LR   +   T  YP  +    PR RG   L      EE C  C LC   C
Sbjct: 15  SGLAKGLAVTLRTMTRKTVTAQYPDTQPHLPPRSRGVIGLF-----EENCTVCMLCAREC 69

Query: 74  PAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           P   I I+S                     R+ ID   C+YCG+C E CP DA+   P F
Sbjct: 70  PDWCIYIDSHKETVPAANPGGRERSRNVLDRFAIDFSLCMYCGICIEVCPFDALFWSPEF 129

Query: 125 EFATETRQELYYDKERL------------LNNGDRWESEIVRNIV 157
           E+A    ++L +++++L            L+ G     EI     
Sbjct: 130 EYAETDIRDLTHERDKLREWMWTVPAPPALDPGAEEPKEIAAARK 174


>gi|108796694|ref|YP_636525.1| NADH dehydrogenase subunit I [Zygnema circumcarinatum]
 gi|110287714|sp|Q32RK1|NDHI_ZYGCR RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|61393678|gb|AAX45820.1| 18 kDa subunit of NADH-plastoquinone oxidoreductase [Zygnema
           circumcarinatum]
          Length = 181

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +  +TI YP+EK   S RFRG            +CIAC++C  +CP 
Sbjct: 19  IGQGFMVTLDHMNRTASTIQYPYEKLIPSERFRGRIHFEFD-----KCIACEVCVRVCPI 73

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++   +     ++   Y ID   CI+CG C E CP + +     +E +   R EL 
Sbjct: 74  NLPVVDWEFQKSMKKKQLKSYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSAYDRHELN 133

Query: 136 YD 137
           YD
Sbjct: 134 YD 135


>gi|172072940|ref|YP_001806701.1| NADH dehydrogenase subunit I [Cryptomeria japonica]
 gi|171854959|dbj|BAG16699.1| NADH-plastoquinone oxidoreductase subunit I [Cryptomeria japonica]
 gi|239794327|dbj|BAH73324.1| NADH-plastoquinone oxidoreductase subunit I [Cryptomeria japonica]
 gi|239794410|dbj|BAH73406.1| NADH-plastoquinone oxidoreductase subunit I [Cryptomeria japonica]
          Length = 160

 Score =  102 bits (254), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 40/122 (32%), Positives = 56/122 (45%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK   S RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMVTLYHMNRLPITIQYPYEKLIPSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++       G +R   Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  NLPVVDWKVGIDIGKKRLENYSIDFGICIFCGNCVEYCPTNCLAMTEEYELSTYDRHELN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|156742067|ref|YP_001432196.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Roseiflexus castenholzii DSM 13941]
 gi|156233395|gb|ABU58178.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Roseiflexus
           castenholzii DSM 13941]
          Length = 449

 Score =  102 bits (253), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 39/151 (25%), Positives = 57/151 (37%), Gaps = 16/151 (10%)

Query: 16  FVGAFFLCLRYF-------FKAK------TTINYPFEKGSTSPRFRGEHALRRYPN-GEE 61
            +    +  R+F        +         T+ YP E+      FR    L      G+E
Sbjct: 35  LLTGLDVVFRHFRDALTRKLEKPSQQTGVFTVQYPEERLKLPEAFRNFPILLYDDETGQE 94

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVR--YDIDMIKCIYCGLCQEACPVDAIV 119
            C +C  C+ ICP Q I +        G        + I+   C+ CGLC E CP DAI 
Sbjct: 95  LCTSCFQCQRICPPQVIHMTQARDPSTGKPVPAVAEFLIEYDACMSCGLCAEVCPFDAIK 154

Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWES 150
               FE++T+    L  +K  L      +E 
Sbjct: 155 MDHEFEYSTDVHGGLTINKAALNRPISYYEK 185


>gi|239828578|ref|YP_002951202.1| NADH dehydrogenase subunit I [Geobacillus sp. WCH70]
 gi|239808871|gb|ACS25936.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacillus
           sp. WCH70]
          Length = 139

 Score =  102 bits (253), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 42/134 (31%), Positives = 52/134 (38%), Gaps = 7/134 (5%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           +          L+   + K T +YP E      RFRG           E+CI C  C  I
Sbjct: 1   MIGLAKGLAYTLKNLTREKVTYDYPNEPLPLPDRFRGIQKFY-----PEKCIVCNQCANI 55

Query: 73  CPAQAITIESGPRCHD--GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
           CP   I +            +    Y I+   CI C LC E CP +AIV   NFE A  +
Sbjct: 56  CPTDCIQLTGKKHPDPTKKGKIIDTYSINFEICILCDLCTEVCPTEAIVMTNNFELAEYS 115

Query: 131 RQELYYDKERLLNN 144
           R  LY D   L  N
Sbjct: 116 RDALYKDLAWLDEN 129


>gi|313183963|ref|YP_004021817.1| NADH-plastoquinone oxidoreductase subunit I [Equisetum arvense]
 gi|281371683|gb|ADA63616.1| NADH-plastoquinone oxidoreductase subunit I [Equisetum arvense]
          Length = 182

 Score =  102 bits (253), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F +   +  ++  TI YP+EK   S RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFSVTTDHMNRSPMTIQYPYEKLIPSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++   +     ++   Y ID   CI+CG C E CP + +     +E +T  R +L 
Sbjct: 77  NLPVVDWELKKDLRKKQLKNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHDLN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|60117229|ref|YP_209563.1| NADH dehydrogenase subunit I [Huperzia lucidula]
 gi|75286705|sp|Q5SCZ1|NDHI_HUPLU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|50660037|gb|AAT80759.1| NADH-plastoquinone oxidoreductase subunit 8 [Huperzia lucidula]
          Length = 183

 Score =  102 bits (253), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   T+ YP+EK   S RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMVTLDHMNRLPMTVQYPYEKLIPSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++     +   ++   Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  NLPVVDWEFEKNIRKKQLTSYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           +D
Sbjct: 137 HD 138


>gi|284034103|ref|YP_003384034.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Kribbella flavida DSM 17836]
 gi|283813396|gb|ADB35235.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Kribbella
           flavida DSM 17836]
          Length = 214

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 43/137 (31%), Positives = 60/137 (43%), Gaps = 14/137 (10%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
           K  +    +  +   +   T  YP  +    PR RG  AL      EE C +C LC   C
Sbjct: 6   KGLIDGLKVTAKTLSRRAVTEQYPDVQPELPPRSRGVIALM-----EENCTSCMLCAREC 60

Query: 74  PAQAITIES---------GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           P+  I I+S                     R+ ID   C+YCG+C EACP DA+   P F
Sbjct: 61  PSWCIYIDSHTETAPSVGEQARERSRNVLDRFAIDFSLCMYCGICIEACPFDALFWSPEF 120

Query: 125 EFATETRQELYYDKERL 141
           E+A    + L ++K+RL
Sbjct: 121 EYAETDLRNLTHEKDRL 137


>gi|138896928|ref|YP_001127381.1| NADH dehydrogenase subunit I [Geobacillus thermodenitrificans
           NG80-2]
 gi|196249745|ref|ZP_03148441.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacillus
           sp. G11MC16]
 gi|134268441|gb|ABO68636.1| NADH-quinone oxidoreductase chain I [Geobacillus
           thermodenitrificans NG80-2]
 gi|196210621|gb|EDY05384.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacillus
           sp. G11MC16]
          Length = 139

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 44/134 (32%), Positives = 54/134 (40%), Gaps = 7/134 (5%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           +   V      L+   + K T  YP E      RFRG           E+CI C  C  I
Sbjct: 1   MIGLVKGLAYTLKELTREKVTYKYPHEPLPLPDRFRGIQKFY-----PEKCIVCNQCMNI 55

Query: 73  CPAQAITIESGPRCHD--GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
           CP Q I +            +    Y+I+   CI C LC E CP +AIV   NFE A  +
Sbjct: 56  CPTQCIQLTGKKHPDPTKKGKVIETYNINFEICILCDLCTEVCPTEAIVMTNNFELAEYS 115

Query: 131 RQELYYDKERLLNN 144
           R  LY D   L  N
Sbjct: 116 RDALYKDLTWLDEN 129


>gi|124112065|ref|YP_001019163.1| 18 kDa subunit of NADH-plastoquinone oxidoreductase [Chlorokybus
           atmophyticus]
 gi|156632609|sp|Q19V57|NDHI_CHLAT RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|124012181|gb|ABD62197.2| 18 kDa subunit of NADH-plastoquinone oxidoreductase [Chlorokybus
           atmophyticus]
          Length = 175

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F +   +  +   TI YP+EK   S RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMVTFDHMSRRPVTIQYPYEKLIPSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               +    +     ++   Y ID   CI+CG C E CP + +     +E +   R EL 
Sbjct: 77  NLPVVNWEFQKEKKKKQLQTYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSVYDRHELN 136

Query: 136 YD 137
           +D
Sbjct: 137 FD 138


>gi|139387309|ref|YP_001123429.1| NADH dehydrogenase subunit I [Capsella bursa-pastoris]
 gi|156632608|sp|A4QKP9|NDHI_CAPBU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|134286630|dbj|BAF50254.1| NADH dehydrogenase subunit [Capsella bursa-pastoris]
          Length = 172

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHTNRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++     +   +R + Y ID   CI+CG C E CP + +     +EF+T  R EL 
Sbjct: 77  DLPVVDWKLETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYEFSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|296274495|ref|YP_003657126.1| NADH-quinone oxidoreductase subunit I [Arcobacter nitrofigilis DSM
           7299]
 gi|296098669|gb|ADG94619.1| NADH-quinone oxidoreductase, chain I [Arcobacter nitrofigilis DSM
           7299]
          Length = 207

 Score =  101 bits (252), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 49/172 (28%), Positives = 73/172 (42%), Gaps = 18/172 (10%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYF-----FKAKTTINYPFEKGSTSPRFRGEHALRRY 56
           ++F+ ++      E      +           K   T+ YP EK    PR+R  H L   
Sbjct: 34  QVFKRSIK----GELFTGLKITFIMMKEALFNKQMHTVQYPAEKLPIGPRYRAVHKLLAL 89

Query: 57  -PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
             +GE RCI C LCE IC +  I +++     +  +  + Y I+  +CI+CG C E CP 
Sbjct: 90  LESGENRCIGCGLCEKICISDCIRMDTRID-ENSRKEVLEYTINFGRCIFCGYCAEVCPE 148

Query: 116 DAIVEGPNFEFATETRQELYYDKERLLNNGDR------WESEIVRNIVTDSP 161
            AIV G  +E A E R      K+ LL   D+      +E     +   D  
Sbjct: 149 LAIVHGGRYENAGEQRAHFVV-KDDLLTPLDKLAQQQEYEGFGAVSPDADEK 199


>gi|123965423|ref|YP_001010504.1| NADH dehydrogenase subunit I [Prochlorococcus marinus str. MIT
           9515]
 gi|156632625|sp|A2BUD6|NDHI_PROM5 RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|123199789|gb|ABM71397.1| putative NADH Dehydrogenase subunit [Prochlorococcus marinus str.
           MIT 9515]
          Length = 208

 Score =  101 bits (251), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 62/144 (43%), Gaps = 13/144 (9%)

Query: 1   MRIFRCNVSFLFLKEFVG-------AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL 53
           M+ F   V+  ++KE  G          +   +  +   T+ YP+EK   S R+RG    
Sbjct: 1   MKDFLQKVNS-YIKEAFGAGKYLYDGLSVTFDHLRRRPVTVQYPYEKLIPSERYRGRI-- 57

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                  ++CIAC++C  +CP     ++         +    Y ID   CI+CG C E C
Sbjct: 58  ---HYEFDKCIACEVCVRVCPINLPVVDWVMNKETKKKELRNYSIDFGVCIFCGNCVEYC 114

Query: 114 PVDAIVEGPNFEFATETRQELYYD 137
           P + +     +E AT  R  L +D
Sbjct: 115 PTNCLSMTEEYELATFDRHNLNFD 138


>gi|330850797|ref|YP_004376475.1| NADH dehydrogenase subunit I [Olea europaea subsp. europaea]
 gi|291059308|gb|ADD72144.1| NADH-plastoquinone oxidoreductase subunit I [Olea europaea]
 gi|328795487|emb|CBR30369.1| NADH dehydrogenase subunit I [Olea europaea subsp. europaea]
          Length = 170

 Score =  101 bits (251), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHVNRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYNRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|326200333|gb|ADZ52372.1| NADH dehydrogenase 18 kDa subunit [Asclepias syriaca]
          Length = 173

 Score =  101 bits (251), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFAITLSHANRLPITIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R   Y ID   CI+CG C E CP + +     +E ++  R EL 
Sbjct: 77  DLPVVDWKLESDIRKKRLFNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSSYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|123967714|ref|YP_001008572.1| NADH dehydrogenase subunit I [Prochlorococcus marinus str. AS9601]
 gi|156632626|sp|A2BNV4|NDHI_PROMS RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|123197824|gb|ABM69465.1| putative NADH Dehydrogenase subunit [Prochlorococcus marinus str.
           AS9601]
          Length = 208

 Score =  101 bits (251), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 61/144 (42%), Gaps = 13/144 (9%)

Query: 1   MRIFRCNVSFLFLKE-------FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL 53
           M+ F   ++  ++KE             +   +  +   T+ YP+EK   S R+RG    
Sbjct: 1   MKNFLQQINS-YIKEAFNAGKYLYNGLSVTFDHLRRRPVTVQYPYEKLIPSERYRGRI-- 57

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                  ++CIAC++C  +CP     ++         +    Y ID   CI+CG C E C
Sbjct: 58  ---HYEFDKCIACEVCVRVCPINLPVVDWVMNKETKKKELRNYSIDFGVCIFCGNCVEYC 114

Query: 114 PVDAIVEGPNFEFATETRQELYYD 137
           P + +     +E AT  R  L +D
Sbjct: 115 PTNCLSMTEEYELATFDRHNLNFD 138


>gi|116617162|ref|YP_817536.1| NADH-plastoquinone oxidoreductase subunit I [Coffea arabica]
 gi|122153673|sp|A0A389|NDHI_COFAR RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|116242218|gb|ABJ89733.1| NADH-plastoquinone oxidoreductase subunit I [Coffea arabica]
          Length = 167

 Score =  101 bits (251), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  T  RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPITIQYPYEKLITPERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         ++ + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKQLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|34501455|ref|NP_904242.1| NADH dehydrogenase subunit I [Physcomitrella patens subsp. patens]
 gi|75294068|sp|Q6YXP9|NDHI_PHYPA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|34494825|dbj|BAC85092.1| NADH dehydrogenase 18 kD subunit [Physcomitrella patens subsp.
           patens]
          Length = 181

 Score =  101 bits (251), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK   S RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMVTLDHMNRLPMTIQYPYEKLIPSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++   +     ++   Y ID   CI+CG C E CP + +     +E +   R +L 
Sbjct: 77  NLPVVDWELKKDVKKKQLKSYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSIYDRHDLN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|139390403|ref|YP_001123000.1| NADH dehydrogenase subunit [Aethionema cordifolium]
 gi|156632602|sp|A4QJH0|NDHI_AETCO RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|134286196|dbj|BAF49825.1| NADH dehydrogenase subunit [Aethionema cordifolium]
          Length = 167

 Score =  101 bits (251), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 40/122 (32%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHTNRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +EF+T  R EL 
Sbjct: 77  DLPVVDWKLETPIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYEFSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|115391957|ref|YP_778545.1| NADH dehydrogenase subunit I [Jasminum nudiflorum]
 gi|122164925|sp|Q06R76|NDHI_JASNU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|110456278|gb|ABG74683.1| NADH dehydrogenase 18 kDa subunit [Jasminum nudiflorum]
          Length = 167

 Score =  101 bits (251), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYNRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|139389858|ref|YP_001123518.1| NADH dehydrogenase subunit I [Crucihimalaya wallichii]
 gi|156632611|sp|A4QKY8|NDHI_CRUWA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|134286720|dbj|BAF50343.1| NADH dehydrogenase subunit [Crucihimalaya wallichii]
          Length = 172

 Score =  101 bits (251), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHTNRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++     +   +R + Y ID   CI+CG C E CP + +     +EF+T  R EL 
Sbjct: 77  DLPVVDWKLETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYEFSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|78778547|ref|YP_396659.1| NADH dehydrogenase subunit I [Prochlorococcus marinus str. MIT
           9312]
 gi|110287703|sp|Q31D22|NDHI_PROM9 RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|78712046|gb|ABB49223.1| NADH-plastoquinone oxidoreductase, I subunit [Prochlorococcus
           marinus str. MIT 9312]
          Length = 208

 Score =  101 bits (251), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 37/144 (25%), Positives = 61/144 (42%), Gaps = 13/144 (9%)

Query: 1   MRIFRCNVSFLFLKE-------FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL 53
           M+ F   ++  ++KE             +   +  +   T+ YP+EK   S R+RG    
Sbjct: 1   MKNFLQQINS-YIKEAFNAGKYLYNGLSVTFDHLRRRPVTVQYPYEKLIPSERYRGRI-- 57

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                  ++CIAC++C  +CP     ++         +    Y ID   CI+CG C E C
Sbjct: 58  ---HYEFDKCIACEVCVRVCPINLPVVDWVMNKETKKKELRNYSIDFGVCIFCGNCVEYC 114

Query: 114 PVDAIVEGPNFEFATETRQELYYD 137
           P + +     +E AT  R  L +D
Sbjct: 115 PTNCLSMTEEYELATFDRHNLNFD 138


>gi|226315025|ref|YP_002774921.1| NADH dehydrogenase subunit I [Brevibacillus brevis NBRC 100599]
 gi|226097975|dbj|BAH46417.1| NADH-quinone oxidoreductase chain I [Brevibacillus brevis NBRC
           100599]
          Length = 137

 Score =  100 bits (250), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 44/134 (32%), Positives = 57/134 (42%), Gaps = 7/134 (5%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           +           +   + K T  YP       PRFRG           E+CI C  C  I
Sbjct: 1   MLGLAKGLGYTFKKLTEKKVTHFYPDVPFPMPPRFRGIQHF-----SPEKCIVCNQCARI 55

Query: 73  CPAQAI--TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
           CP + I  T +  P      +    YDI+   CI C LC E CP +AIV   NFE A  +
Sbjct: 56  CPTECIQLTGKPHPDPEKKGKIIDTYDINFELCILCDLCTEVCPTEAIVMTNNFELAAYS 115

Query: 131 RQELYYDKERLLNN 144
           R ELY + + L +N
Sbjct: 116 RDELYKNLKWLDDN 129


>gi|268678788|ref|YP_003303219.1| NADH-quinone oxidoreductase, chain I [Sulfurospirillum deleyianum
           DSM 6946]
 gi|268616819|gb|ACZ11184.1| NADH-quinone oxidoreductase, chain I [Sulfurospirillum deleyianum
           DSM 6946]
          Length = 204

 Score =  100 bits (250), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 52/154 (33%), Positives = 75/154 (48%), Gaps = 4/154 (2%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKT-TINYPFEKGSTSPRFRGEHAL-RRYPNGEE 61
           F+  V      E     ++ LR   +    T+ YP EK    PR+R  H L R + +G E
Sbjct: 31  FQRVVKRTLKGELFVGLWVVLREMIRFDIHTLKYPSEKMEMGPRYRAIHRLLRLFESGSE 90

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCI C LCE IC A+ I +E+        +   +Y I+  +CI+CG C E CP  AIV G
Sbjct: 91  RCIGCGLCEKICIAKCIRMETRID-EKSRKEVSQYSINFGRCIFCGYCAEVCPELAIVHG 149

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRN 155
             +E A+E R      KE +L   D + ++  + 
Sbjct: 150 AEYENASEQRAHFGL-KEDMLTPLDTFRAKEQKE 182


>gi|22298210|ref|NP_681457.1| NADH dehydrogenase subunit I [Thermosynechococcus elongatus BP-1]
 gi|81743592|sp|Q8DL31|NDHI_THEEB RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|22294389|dbj|BAC08219.1| NADH dehydrogenase subunit [Thermosynechococcus elongatus BP-1]
          Length = 196

 Score =  100 bits (250), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 +   +  +   T+ YP+EK   S RFRG            +CIAC++C  +CP 
Sbjct: 21  IGQGLSVTFDHMRRRPITVQYPYEKLIPSERFRGRIHFEFD-----KCIACEVCVRVCPI 75

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +    Y ID   CI+C  C E CP + +     +E AT  R EL 
Sbjct: 76  NLPVVDWVFNKELKKKELKHYSIDFGVCIFCANCVEYCPTNCLSVTEEYELATYDRHELN 135

Query: 136 YD 137
           YD
Sbjct: 136 YD 137


>gi|139389473|ref|YP_001123169.1| NADH dehydrogenase subunit I [Olimarabidopsis pumila]
 gi|156632619|sp|A4QJY6|NDHI_OLIPU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|134286367|dbj|BAF49994.1| NADH dehydrogenase subunit [Olimarabidopsis pumila]
          Length = 172

 Score =  100 bits (250), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHTNRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++     +   +R + Y ID   CI+CG C E CP + +     +EF+T  R EL 
Sbjct: 77  DLPVVDWKLETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYEFSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|7525089|ref|NP_051113.1| NADH dehydrogenase subunit I [Arabidopsis thaliana]
 gi|297790826|ref|XP_002863298.1| NADH dehydrogenase subunit I [Arabidopsis lyrata subsp. lyrata]
 gi|6685681|sp|P56755|NDHI_ARATH RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|5881750|dbj|BAA84441.1| NADH dehydrogenase subunit [Arabidopsis thaliana]
 gi|297309132|gb|EFH39557.1| NADH dehydrogenase subunit I [Arabidopsis lyrata subsp. lyrata]
          Length = 172

 Score =  100 bits (250), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHTNRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++     +   +R + Y ID   CI+CG C E CP + +     +EF+T  R EL 
Sbjct: 77  DLPVVDWKLETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYEFSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|18860373|ref|NP_569689.1| NADH dehydrogenase subunit I [Psilotum nudum]
 gi|75305090|sp|Q8WHX5|NDHI_PSINU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|18389526|dbj|BAB84278.1| NADH dehydrogenase 18kD subunit [Psilotum nudum]
          Length = 165

 Score =  100 bits (250), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   T+ YP+EK   S RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFMVTLEHMNRLPITVQYPYEKIIPSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         ++   Y ID   CI+CG C E CP + +     +E AT  R EL 
Sbjct: 77  NLPVVDWELIKSMRKKQLKSYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELATYDRHELN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|139389152|ref|YP_001123869.1| NADH dehydrogenase subunit I [Nasturtium officinale]
 gi|156632617|sp|A4QLY9|NDHI_NASOF RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|134287075|dbj|BAF50694.1| NADH dehydrogenase subunit [Nasturtium officinale]
          Length = 167

 Score =  100 bits (250), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHTNRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++     +   +R + Y ID   CI+CG C E CP + +     +EF+T  R EL 
Sbjct: 77  DLPVVDWKLETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYEFSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|126695517|ref|YP_001090403.1| NADH dehydrogenase subunit I [Prochlorococcus marinus str. MIT
           9301]
 gi|156632622|sp|A3PAM7|NDHI_PROM0 RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|126542560|gb|ABO16802.1| putative NADH Dehydrogenase subunit [Prochlorococcus marinus str.
           MIT 9301]
          Length = 208

 Score =  100 bits (250), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 13/144 (9%)

Query: 1   MRIFRCNVSFLFLKE-------FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL 53
           M+ F   ++  ++KE           F +   +  +   T+ YP+EK   S R+RG    
Sbjct: 1   MKNFLQQINS-YIKEAFNAGKYLYNGFSVTFDHLRRRPVTVQYPYEKLIPSERYRGRI-- 57

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                  ++CIAC++C  +CP     ++         +    Y ID   CI+CG C E C
Sbjct: 58  ---HYEFDKCIACEVCVRVCPINLPVVDWVMNKETKKKELRNYSIDFGVCIFCGNCVEYC 114

Query: 114 PVDAIVEGPNFEFATETRQELYYD 137
           P + +     +E AT  R  L +D
Sbjct: 115 PTNCLSMTEEYELATFDRHNLNFD 138


>gi|295798108|emb|CAX68929.1| NADH dehydrogenase I, I subunit (23 kDa) [uncultured bacterium]
          Length = 178

 Score =  100 bits (250), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 19/150 (12%)

Query: 12  FLKEFVGAFFLCLRYFFKAK-----------------TTINYPFEKGSTSPRFRGEHALR 54
           ++ E +    L  ++FF+                    T+ +P E    + R R  H L 
Sbjct: 19  YISEVIRGVSLTSKHFFRNFFLHLLHAFGLFKNIPAGVTVQFPEETPFLADRTRTRHRLT 78

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT-RRTVRYDIDMIKCIYCGLCQEAC 113
           +  +G  RC+AC +CE +CPA+ I I +         +R   +DID+ KC+YCG C E C
Sbjct: 79  KREDGSPRCVACMMCETVCPARCIYIVAEEHPDPNIEKRPKSFDIDLGKCVYCGFCVEVC 138

Query: 114 PVDAIVE-GPNFEFATETRQELYYDKERLL 142
           P DAI         +++TR++L  D  +LL
Sbjct: 139 PEDAIRMDTKIVAISSDTREDLMLDITKLL 168


>gi|89280690|ref|YP_514907.1| NADH dehydrogenase subunit I [Solanum lycopersicum]
 gi|91209043|ref|YP_538904.1| NADH dehydrogenase subunit I [Solanum bulbocastanum]
 gi|108773183|ref|YP_635693.1| NADH dehydrogenase subunit I [Solanum tuberosum]
 gi|110287700|sp|Q2MI46|NDHI_SOLLC RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|110287705|sp|Q2MID3|NDHI_SOLBU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|110287706|sp|Q2VEC7|NDHI_SOLTU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|82754677|gb|ABB90091.1| NADH dehydrogenase subunit I [Solanum tuberosum]
 gi|84371950|gb|ABC56268.1| NADH-plastoquinone oxidoreductase subunit I [Solanum bulbocastanum]
 gi|84372038|gb|ABC56355.1| NADH-plastoquinone oxidoreductase subunit I [Solanum lycopersicum]
 gi|88656858|gb|ABD47111.1| NADH-plastoquinone oxidoreductase subunit I [Solanum tuberosum]
 gi|89241726|emb|CAJ32449.1| NADH dehydrogenase subunit I [Solanum lycopersicum]
          Length = 167

 Score =  100 bits (250), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|157412516|ref|YP_001483382.1| NADH dehydrogenase subunit I [Prochlorococcus marinus str. MIT
           9215]
 gi|254526469|ref|ZP_05138521.1| NADH-plastoquinone oxidoreductase, I subunit [Prochlorococcus
           marinus str. MIT 9202]
 gi|167016274|sp|A8G2G5|NDHI_PROM2 RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|157387091|gb|ABV49796.1| putative NADH Dehydrogenase subunit [Prochlorococcus marinus str.
           MIT 9215]
 gi|221537893|gb|EEE40346.1| NADH-plastoquinone oxidoreductase, I subunit [Prochlorococcus
           marinus str. MIT 9202]
          Length = 208

 Score =  100 bits (250), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 5/119 (4%)

Query: 19  AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78
              +   +  +   T+ YP+EK   S R+RG           ++CIAC++C  +CP    
Sbjct: 25  GLSVTFDHLRRRPVTVQYPYEKLIPSERYRGRI-----HYEFDKCIACEVCVRVCPINLP 79

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
            ++         +    Y ID   CI+CG C E CP + +     +E AT  R  L +D
Sbjct: 80  VVDWVMNKETKKKELRNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELATFDRHNLNFD 138


>gi|139389319|ref|YP_001123084.1| NADH dehydrogenase subunit [Aethionema grandiflorum]
 gi|156632603|sp|A4QJQ4|NDHI_AETGR RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|134286281|dbj|BAF49909.1| NADH dehydrogenase subunit [Aethionema grandiflorum]
          Length = 167

 Score =  100 bits (250), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 40/122 (32%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK   S RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHTNRLPVTIQYPYEKLIISERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++     H   +R + Y ID   CI+CG C E CP + +     +EF+T  R EL 
Sbjct: 77  DLPVVDWKLETHIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYEFSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|139388150|ref|YP_001123341.1| NADH dehydrogenase subunit [Barbarea verna]
 gi|156632606|sp|A4QKG1|NDHI_BARVE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|134286541|dbj|BAF50166.1| NADH dehydrogenase subunit [Barbarea verna]
          Length = 167

 Score =  100 bits (250), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHTNRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++     +   +R + Y ID   CI+CG C E CP + +     +EF+T  R EL 
Sbjct: 77  DLPVVDWKLETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYEFSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|320354155|ref|YP_004195494.1| NADH dehydrogenase subunit I [Desulfobulbus propionicus DSM 2032]
 gi|320122657|gb|ADW18203.1| NADH dehydrogenase subunit I [Desulfobulbus propionicus DSM 2032]
          Length = 174

 Score =  100 bits (250), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 8/147 (5%)

Query: 5   RCNVSFLFLKEFVGAFFLCLRYFFK------AKTTINYPFEKGSTSPRFRGEHALRRYPN 58
           +     L+L E      +   +F             +YP +K   + R+RG H L ++ +
Sbjct: 13  KDLYERLYLVEVFKGMAVTFGHFISNFLDNSKLYVRHYPEQKPEITARWRGRHRLTKHED 72

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCH-DGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           G  +C+AC +C+  CPA+ I IE+G R      +  VR+DID+++CIYCG C EACP+DA
Sbjct: 73  GTMKCVACFMCQTNCPAKCIMIEAGERVDGRTEKMPVRFDIDLLECIYCGYCVEACPMDA 132

Query: 118 IVE-GPNFEFATETRQELYYDKERLLN 143
           I      F    + R         LL 
Sbjct: 133 IRMDTGIFSVTGDKRSSFVMTLNDLLA 159


>gi|139390209|ref|YP_001123781.1| NADH dehydrogenase subunit I [Lobularia maritima]
 gi|156632616|sp|A4QLQ1|NDHI_LOBMA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|134286986|dbj|BAF50606.1| NADH dehydrogenase subunit [Lobularia maritima]
          Length = 167

 Score =  100 bits (250), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHTNRLPVTIQYPYEKVITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++     +   +R + Y ID   CI+CG C E CP + +     +EF+T  R EL 
Sbjct: 77  DLPVVDWKLETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYEFSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|311033314|ref|ZP_07711404.1| NADH dehydrogenase subunit I [Bacillus sp. m3-13]
          Length = 139

 Score =  100 bits (249), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 42/134 (31%), Positives = 54/134 (40%), Gaps = 7/134 (5%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           +          L+   K K T +YP E      RFRG           E+CI C  C  I
Sbjct: 1   MLGLAKGLKYTLQNLTKKKVTYDYPNEPLPLPDRFRGIQKFY-----PEKCIVCNQCSNI 55

Query: 73  CPAQAITIESGPRCHD--GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
           CP   I +            +    YDI+   CI C LC E CP +AI+   NFE A  +
Sbjct: 56  CPTDCIQLTGKKHPDPTKKGKIIDTYDINFEICILCDLCTEVCPTEAIIMTNNFELAEYS 115

Query: 131 RQELYYDKERLLNN 144
           R  L+ D + L  N
Sbjct: 116 RDRLFKDLQWLDEN 129


>gi|262400772|gb|ACY66261.1| NADH dehydrogenase subunit I [Brassica napus]
          Length = 167

 Score =  100 bits (249), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHTNRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++     +   +R + Y ID   CI+CG C E CP + +     +EF+T  R EL 
Sbjct: 77  DLPVVDWKLETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYEFSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|108802696|ref|YP_636353.1| NADH dehydrogenase subunit I [Eucalyptus globulus subsp. globulus]
 gi|309322499|ref|YP_003934012.1| NADH-plastoquinone oxidoreductase subunit I [Eucalyptus grandis]
 gi|110287697|sp|Q49KU4|NDHI_EUCGG RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|60460862|gb|AAX21082.1| NADH-plastoquinone oxidoreductase subunit I [Eucalyptus globulus
           subsp. globulus]
 gi|308223333|gb|ADO23641.1| NADH-plastoquinone oxidoreductase subunit I [Eucalyptus grandis]
          Length = 167

 Score =  100 bits (249), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETGIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|81301632|ref|YP_398927.1| NADH dehydrogenase subunit I [Nicotiana tomentosiformis]
 gi|110287702|sp|Q33BW8|NDHI_NICTO RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|80750991|dbj|BAE48067.1| NADH dehydrogenase 18kD subunit [Nicotiana tomentosiformis]
          Length = 167

 Score =  100 bits (249), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|290489758|gb|ADD31286.1| NADH-plastoquinone oxidoreductase subunit I protein [Ilex cornuta]
          Length = 167

 Score =  100 bits (249), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK   S RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFTITLSHANRLPVTIQYPYEKLIISERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|197121695|ref|YP_002133646.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
 gi|220916491|ref|YP_002491795.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|196171544|gb|ACG72517.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
 gi|219954345|gb|ACL64729.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 239

 Score =  100 bits (249), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 50/182 (27%), Positives = 74/182 (40%), Gaps = 31/182 (17%)

Query: 10  FLFLKEFVGAFFLCLRYFFKA-----------------------KTTINYPFEKGSTSPR 46
            ++  E +       ++F K                          T+ YP E+   +P 
Sbjct: 15  SMYFPEIIRGIGTITKHFLKNLFFSRDANPDILARKRGGFGHSDNVTLQYPEERAPYAPA 74

Query: 47  FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG-TRRTVRYDIDMIKCIY 105
           +RG H L    +G+ RC+AC +C  ICPAQ I IE+     D   +   ++ ID ++CI 
Sbjct: 75  YRGLHRLVPREDGKPRCVACYMCATICPAQCIYIEAAEYPDDPVEKYPAKFVIDELRCIV 134

Query: 106 CGLCQEACPVDAIVE-GPNFEFATETRQELYYDKERLLNN------GDRWESEIVRNIVT 158
           CG C EACP DAI          +  R    +D++RLL         D W      +I  
Sbjct: 135 CGFCVEACPKDAIRMDSGEHTPPSYERSAQIWDEKRLLRGPPVSYQYDPWLRRGSPSIPP 194

Query: 159 DS 160
           D 
Sbjct: 195 DK 196


>gi|86158986|ref|YP_465771.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|110287754|sp|Q2IL01|NUOI1_ANADE RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName:
           Full=NADH dehydrogenase I subunit I 1; AltName:
           Full=NDH-1 subunit I 1
 gi|85775497|gb|ABC82334.1| NADH dehydrogenase subunit I [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 239

 Score =  100 bits (249), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 50/182 (27%), Positives = 74/182 (40%), Gaps = 31/182 (17%)

Query: 10  FLFLKEFVGAFFLCLRYFFKA-----------------------KTTINYPFEKGSTSPR 46
            ++  E +       ++F K                          T+ YP E+   +P 
Sbjct: 15  SMYFPEIIRGIGTITKHFLKNLFFSRDANPDILARKRGGFGHSDNVTLQYPEERAPYAPA 74

Query: 47  FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG-TRRTVRYDIDMIKCIY 105
           +RG H L    +G+ RC+AC +C  ICPAQ I IE+     D   +   ++ ID ++CI 
Sbjct: 75  YRGLHRLVPREDGKPRCVACYMCATICPAQCIYIEAAEYPDDPVEKYPAKFVIDELRCIV 134

Query: 106 CGLCQEACPVDAIVE-GPNFEFATETRQELYYDKERLLNN------GDRWESEIVRNIVT 158
           CG C EACP DAI          +  R    +D++RLL         D W      +I  
Sbjct: 135 CGFCVEACPKDAIRMDSGEHTPPSYERSAQIWDEKRLLRGPPVSYQYDPWLRRGSPSIPP 194

Query: 159 DS 160
           D 
Sbjct: 195 DK 196


>gi|225544176|ref|YP_002720166.1| ndhI [Jatropha curcas]
 gi|224979617|gb|ACN72744.1| ndhI [Jatropha curcas]
          Length = 170

 Score =  100 bits (249), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWQLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|139389698|ref|YP_001123254.1| NADH dehydrogenase subunit [Arabis hirsuta]
 gi|156632605|sp|A4QK74|NDHI_ARAHI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|134286453|dbj|BAF50079.1| NADH dehydrogenase subunit [Arabis hirsuta]
          Length = 167

 Score =  100 bits (249), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 41/122 (33%), Positives = 59/122 (48%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHTNRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++     +   +R + Y ID   CI+CG C E CP + +     +EFAT  R EL 
Sbjct: 77  DLPVVDWKLETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYEFATYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|290489766|gb|ADD31290.1| NADH-plastoquinone oxidoreductase subunit I protein [Nerium
           oleander]
          Length = 167

 Score =  100 bits (249), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFTITLSHANRLPITIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R   Y ID   CI+CG C E CP + +     +E ++  R EL 
Sbjct: 77  DLPVVDWKLESDIRKKRLFNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSSYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|11466019|ref|NP_054561.1| NADH dehydrogenase subunit I [Nicotiana tabacum]
 gi|28261773|ref|NP_783286.1| NADH dehydrogenase subunit I [Atropa belladonna]
 gi|78102602|ref|YP_358741.1| NADH dehydrogenase subunit I [Nicotiana sylvestris]
 gi|120539|sp|P06252|NDHI_TOBAC RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75295516|sp|Q7FNR7|NDHI_ATRBE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|110287701|sp|Q3C1Q0|NDHI_NICSY RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|1223671|emb|CAA77397.1| NADH dehydrogenase 18kD subunit [Nicotiana tabacum]
 gi|20068387|emb|CAC88100.1| NADH dehydrogenase 18kD subunit [Atropa belladonna]
 gi|77799629|dbj|BAE46718.1| NADH dehydrogenase 18kD subunit [Nicotiana sylvestris]
 gi|225259|prf||1211235CU ORF 167
          Length = 167

 Score =  100 bits (249), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|290489764|gb|ADD31289.1| NADH-plastoquinone oxidoreductase subunit I protein [Nelumbo
           nucifera]
          Length = 180

 Score =  100 bits (249), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWRLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|297569880|ref|YP_003691224.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296925795|gb|ADH86605.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 146

 Score =  100 bits (249), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 36/124 (29%), Positives = 57/124 (45%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
           K  V    +  +Y  +   T+ YP +    +PR+RG   L        +CIAC +C+  C
Sbjct: 13  KSLVVGLGITFKYMIRPVVTLQYPRQAVKMAPRYRGHIDLVPDAESGNKCIACGMCQRNC 72

Query: 74  PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
           P+  IT++S        +    Y +D  KC  CGLC E+CP DA+     +  A    ++
Sbjct: 73  PSGCITLKSEKPEGAKKKVLTGYRLDFTKCSLCGLCVESCPTDALDFSKEYNLAGFKAED 132

Query: 134 LYYD 137
             +D
Sbjct: 133 FVFD 136


>gi|239929559|ref|ZP_04686512.1| NADH dehydrogenase subunit NuoI2 [Streptomyces ghanaensis ATCC
           14672]
 gi|291437885|ref|ZP_06577275.1| NADH-quinone oxidoreductase subunit I 2 [Streptomyces ghanaensis
           ATCC 14672]
 gi|291340780|gb|EFE67736.1| NADH-quinone oxidoreductase subunit I 2 [Streptomyces ghanaensis
           ATCC 14672]
          Length = 223

 Score =  100 bits (249), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 57/139 (41%), Gaps = 14/139 (10%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
                   + LR   K   T  YP  + +  PR RG   L      EE C  C LC   C
Sbjct: 7   SGLAKGLAVTLRTMTKKPVTDQYPDTQPALPPRTRGVIGLF-----EENCTVCMLCAREC 61

Query: 74  PAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           P   I I+S                     R+ ID   C+YCG+C E CP DA+   P F
Sbjct: 62  PDWCIYIDSHKETIPATTPGGRERSRNVLDRFAIDFSLCMYCGICIEVCPFDALFWSPEF 121

Query: 125 EFATETRQELYYDKERLLN 143
           E+A    ++L +++++L  
Sbjct: 122 EYAETDIRDLTHERDKLRE 140


>gi|164597843|ref|NP_084755.2| NADH dehydrogenase subunit I [Oenothera elata subsp. hookeri]
 gi|169142763|ref|YP_001687190.1| NADH dehydrogenase subunit I [Oenothera argillicola]
 gi|169142913|ref|YP_001687336.1| NADH dehydrogenase subunit I [Oenothera glazioviana]
 gi|169142998|ref|YP_001687420.1| NADH dehydrogenase subunit I [Oenothera biennis]
 gi|169143084|ref|YP_001687504.1| NADH dehydrogenase subunit I [Oenothera parviflora]
 gi|172045751|sp|Q9MTH8|NDHI_OENEH RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|159793001|gb|ABW98757.1| NADH dehydrogenase subunit I [Oenothera argillicola]
 gi|159793171|gb|ABW98925.1| NADH dehydrogenase subunit I [Oenothera biennis]
 gi|159895525|gb|ABX10090.1| NADH dehydrogenase subunit I [Oenothera glazioviana]
 gi|159895610|gb|ABX10174.1| NADH dehydrogenase subunit I [Oenothera parviflora]
 gi|162423711|emb|CAB67224.2| NADH dehydrogenase subunit I [Oenothera elata subsp. hookeri]
          Length = 165

 Score =  100 bits (249), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETGVRKKRLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|21222986|ref|NP_628765.1| NADH dehydrogenase subunit NuoI2 [Streptomyces coelicolor A3(2)]
 gi|256785901|ref|ZP_05524332.1| NADH dehydrogenase subunit NuoI2 [Streptomyces lividans TK24]
 gi|289769794|ref|ZP_06529172.1| NADH-quinone oxidoreductase subunit I 2 [Streptomyces lividans
           TK24]
 gi|81783418|sp|Q9F2V8|NUOI2_STRCO RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName:
           Full=NADH dehydrogenase I subunit I 2; AltName:
           Full=NDH-1 subunit I 2
 gi|10129699|emb|CAC08256.1| NADH dehydrogenase subunit NuoI2 [Streptomyces coelicolor A3(2)]
 gi|289699993|gb|EFD67422.1| NADH-quinone oxidoreductase subunit I 2 [Streptomyces lividans
           TK24]
          Length = 197

 Score =  100 bits (249), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 40/139 (28%), Positives = 56/139 (40%), Gaps = 14/139 (10%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
                   + LR   +   T  YP  +    PR RG   L      EE C  C LC   C
Sbjct: 7   SGLAKGLAVTLRTMTRKTVTEQYPDAQPELPPRTRGVIGLF-----EENCTVCMLCAREC 61

Query: 74  PAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           P   I I+S                     R+ ID   C+YCG+C E CP DA+   P F
Sbjct: 62  PDWCIYIDSHKETVPAATPGGRDRSRNVLDRFAIDFALCMYCGICIEVCPFDALFWSPEF 121

Query: 125 EFATETRQELYYDKERLLN 143
           E+A    ++L +++++L  
Sbjct: 122 EYAETDIRDLTHERDKLRE 140


>gi|78778014|ref|YP_394329.1| NADH dehydrogenase subunit I [Sulfurimonas denitrificans DSM 1251]
 gi|110287777|sp|Q30PI7|NUOI_SULDN RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|78498554|gb|ABB45094.1| NADH-quinone oxidoreductase, chain I [Sulfurimonas denitrificans
           DSM 1251]
          Length = 211

 Score =  100 bits (249), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 44/140 (31%), Positives = 67/140 (47%), Gaps = 3/140 (2%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKT-TINYPFEKGSTSPRFRGEHAL-RRYPNGEE 61
           F   +      E     ++ LR   +    TI YP EK    PR+R  H + R + +  E
Sbjct: 38  FTRTLRRAIRGELFVGLWVVLREMIRFDIHTIQYPLEKMPIGPRYRAVHEMKRLWESDTE 97

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RCI C LCE IC +  I I++     +  +    Y I++ +CI+CG C E CP  AI  G
Sbjct: 98  RCIGCGLCEKICISNCIRIDT-KLDENSRKEVTEYSINLGRCIFCGYCAEVCPELAITHG 156

Query: 122 PNFEFATETRQELYYDKERL 141
             +E A++ R+     ++ L
Sbjct: 157 GEYENASDQREHFIMYQDML 176


>gi|323366672|gb|ADX43805.1| NADH dehydrogenase subunit I [Eutrochium maculatum]
          Length = 166

 Score =  100 bits (249), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|290489752|gb|ADD31283.1| NADH-plastoquinone oxidoreductase subunit I protein [Aucuba
           japonica]
          Length = 167

 Score =  100 bits (249), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  T  RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITPERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKFETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|139388967|ref|YP_001123693.1| NADH dehydrogenase subunit I [Lepidium virginicum]
 gi|156632615|sp|A4QLG3|NDHI_LEPVR RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|134286897|dbj|BAF50518.1| NADH dehydrogenase subunit [Lepidium virginicum]
          Length = 167

 Score =  100 bits (249), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHTNRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++     +   +R + Y ID   CI+CG C E CP + +     +EF+T  R EL 
Sbjct: 77  DLPVVDWKLETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYEFSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|326909444|ref|YP_004327715.1| NADH dehydrogenase subunit I [Hevea brasiliensis]
 gi|308523558|gb|ADO33608.1| NADH dehydrogenase subunit I [Hevea brasiliensis]
          Length = 165

 Score =  100 bits (248), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|223931105|ref|YP_002586967.1| NADH-plastoquinone oxidoreductase subunit I [Syntrichia ruralis]
 gi|219562319|gb|ACL27650.1| NADH-plastoquinone oxidoreductase subunit I [Syntrichia ruralis]
          Length = 183

 Score =  100 bits (248), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK   S RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMVTLDHMNRLPMTIQYPYEKLIPSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++   +     ++   Y ID   CI+CG C E CP + +     +E +   R +L 
Sbjct: 77  NLPVVDWELKKDIKKKQLKSYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSIYDRHDLN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|218662859|ref|ZP_03518789.1| NADH-ubiquinone oxidoreductase protein [Rhizobium etli IE4771]
          Length = 165

 Score =  100 bits (248), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 46/125 (36%), Positives = 69/125 (55%), Gaps = 2/125 (1%)

Query: 20  FFLCLRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78
             L   Y F    T+ YP  EK     R+RG H L+R   GE +C+AC+LC  ICP   I
Sbjct: 1   MALTFGYLFSRTVTMQYPDKEKWLPYSRYRGHHFLKRDEAGEIKCVACELCARICPCDCI 60

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
            +        G R   +++ID  +C++CGLC++ACP DAI  G  +EF++ + ++L   +
Sbjct: 61  EVVPYED-EKGNRHPAKFEIDTARCLFCGLCEDACPADAIALGQQYEFSSFSSRDLVIGR 119

Query: 139 ERLLN 143
           + LL 
Sbjct: 120 DDLLA 124


>gi|51245168|ref|YP_065052.1| NADH dehydrogenase, subunit 8 [Desulfotalea psychrophila LSv54]
 gi|50876205|emb|CAG36045.1| similar to NADH dehydrogenase, subunit 8 [Desulfotalea psychrophila
           LSv54]
          Length = 145

 Score =  100 bits (248), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 36/125 (28%), Positives = 53/125 (42%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           L   +    +  R FF  K T+ YP E      RFRG   L     G  RC+AC +C   
Sbjct: 12  LWSLIVGMRITAREFFTPKITVQYPHETEVMPARFRGHIELIGDEEGNTRCVACGMCVRA 71

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           CP+  I +          +    Y++D  KC  CG C E+C   AI     +   +  ++
Sbjct: 72  CPSGCIKVSGEKLEGSKKKIATVYELDFTKCSLCGSCIESCNFGAIQFSRVYNHVSTKKE 131

Query: 133 ELYYD 137
           + YY+
Sbjct: 132 DFYYN 136


>gi|222824430|ref|YP_002576004.1| NADH-quinone oxidoreductase, I subunit [Campylobacter lari RM2100]
 gi|222539651|gb|ACM64752.1| NADH-quinone oxidoreductase, I subunit [Campylobacter lari RM2100]
          Length = 210

 Score =  100 bits (248), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 52/165 (31%), Positives = 75/165 (45%), Gaps = 9/165 (5%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKA--KTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
           F   +      E     ++ LR   K     TI YP EK S   R+R  H L R+   E 
Sbjct: 22  FIQIIKRSLNTELFVGLYVVLREMLKKNNSATIKYPMEKVSLDNRYRAVHRLMRFIESEN 81

Query: 62  RC-IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            C I C LCE IC +  I +E+     DG ++   Y I++ +CIYCG C + CP  AIV 
Sbjct: 82  ECCIGCGLCEKICISNCIRMETSL-GEDGRKKVENYSINLGRCIYCGFCADVCPELAIVH 140

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEI----VRNIVTDSP 161
           G  +E A E R      K+  L   D  ++++      ++  D+ 
Sbjct: 141 GKEYENAAEQRSYFG-QKQDFLTPIDELKNQVIFEGSGSLRKDAD 184


>gi|323149136|ref|YP_004222700.1| NADH-plastoquinone oxidoreductase subunit I [Anthriscus cerefolium]
 gi|289645629|gb|ADD13692.1| NADH-plastoquinone oxidoreductase subunit I [Anthriscus cerefolium]
          Length = 167

 Score =  100 bits (248), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHASRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|220907086|ref|YP_002482397.1| NADH dehydrogenase subunit I [Cyanothece sp. PCC 7425]
 gi|254767212|sp|B8HQP6|NDHI_CYAP4 RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|219863697|gb|ACL44036.1| NADH-plastoquinone oxidoreductase, I subunit [Cyanothece sp. PCC
           7425]
          Length = 193

 Score =  100 bits (248), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 +   +  +   T+ YP+EK   S RFRG            +CI+C++C  +CP 
Sbjct: 22  IGQGLAVTFDHMRRRPVTVQYPYEKLIPSERFRGRIHFEFD-----KCISCEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         ++   Y ID   CI+C  C E CP + +     +E +   R EL 
Sbjct: 77  NLPVVDWEFNKELKKKQLKHYSIDFGVCIFCANCVEYCPTNCLSVTEEYELSVYDRHELN 136

Query: 136 YD 137
           +D
Sbjct: 137 FD 138


>gi|168188225|gb|ACA14502.1| NADH dehydrogenase subunit I [Atractylis cancellata]
          Length = 166

 Score =  100 bits (248), Expect = 8e-20,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|296936725|gb|ADH94397.1| NADH-plastoquinone oxidoreductase subunit I [Syzygium cumini]
          Length = 167

 Score =  100 bits (248), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFIITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETGIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|156573661|gb|ABU85164.1| NADH-plastoquinone oxidoreductase subunit I [Anethum graveolens]
          Length = 167

 Score =  100 bits (248), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHASRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|261420756|ref|YP_003254438.1| NADH dehydrogenase subunit I [Geobacillus sp. Y412MC61]
 gi|297531551|ref|YP_003672826.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacillus
           sp. C56-T3]
 gi|319768426|ref|YP_004133927.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacillus
           sp. Y412MC52]
 gi|261377213|gb|ACX79956.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacillus
           sp. Y412MC61]
 gi|297254803|gb|ADI28249.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacillus
           sp. C56-T3]
 gi|317113292|gb|ADU95784.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacillus
           sp. Y412MC52]
          Length = 139

 Score =  100 bits (248), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 42/134 (31%), Positives = 55/134 (41%), Gaps = 7/134 (5%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           +   +      L+   + K T +YP E      RFRG           E+CI C  C  I
Sbjct: 1   MIGLMKGLAYTLKELTREKVTYDYPHEPLPLPDRFRGIQKFY-----PEKCIVCNQCVNI 55

Query: 73  CPAQAITIESGPRCHD--GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
           CP + I +            +    Y+I+   CI C LC E CP +AIV   NFE A  +
Sbjct: 56  CPTECIQLTGKKHPDPTKKGKVIETYNINFEICILCDLCTEVCPTEAIVMTNNFELAEYS 115

Query: 131 RQELYYDKERLLNN 144
           R  LY D   L  N
Sbjct: 116 RDALYKDLAWLDEN 129


>gi|168188229|gb|ACA14504.1| NADH dehydrogenase subunit I [Barnadesia spinosa]
          Length = 166

 Score =  100 bits (248), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|169794126|ref|YP_001718490.1| NADH dehydrogenase subunit I [Manihot esculenta]
 gi|157695938|gb|ABV66207.1| NADH-plastoquinone oxidoreductase subunit I [Manihot esculenta]
          Length = 165

 Score =  100 bits (248), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   T+ YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTVQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|157325587|ref|YP_001468365.1| NADH dehydrogenase subunit I [Ipomoea purpurea]
 gi|157056815|gb|ABV02405.1| NADH-plastoquinone oxidoreductase subunit I [Ipomoea purpurea]
          Length = 167

 Score =  100 bits (248), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  T  RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITPERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWQLETDIRKKRLLNYSIDFGLCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           ++
Sbjct: 137 FN 138


>gi|91208952|ref|YP_538986.1| NADH dehydrogenase subunit I [Gossypium hirsutum]
 gi|119368553|ref|YP_913240.1| NADH dehydrogenase 18kD subunit [Gossypium barbadense]
 gi|110287698|sp|Q2L959|NDHI_GOSHI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|125952732|sp|A0ZZ89|NDHI_GOSBA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|85687466|gb|ABC73678.1| NADH-plastoquinone oxidoreductase subunit I [Gossypium hirsutum]
 gi|119224915|dbj|BAF41301.1| NADH dehydrogenase 18kD subunit [Gossypium barbadense]
          Length = 167

 Score =  100 bits (248), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKFETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|168188237|gb|ACA14508.1| NADH dehydrogenase subunit I [Carthamus tinctorius]
 gi|168188239|gb|ACA14509.1| NADH dehydrogenase subunit I [Centaurea melitensis]
          Length = 166

 Score =  100 bits (248), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIKKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|75300807|sp|Q8HVJ9|NDHI_TRIME RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300822|sp|Q8HVL4|NDHI_SIGBL RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300852|sp|Q8HVP4|NDHI_MILQU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|24460640|gb|AAN61760.1| NADH dehydrogenase subunit I [Milleria quinqueflora]
 gi|24460700|gb|AAN61790.1| NADH dehydrogenase subunit I [Sigesbeckia blakei]
 gi|24460730|gb|AAN61805.1| NADH dehydrogenase subunit I [Trigonospermum melampodioides]
          Length = 166

 Score =  100 bits (248), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|108804038|ref|YP_643975.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Rubrobacter
           xylanophilus DSM 9941]
 gi|108765281|gb|ABG04163.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Rubrobacter
           xylanophilus DSM 9941]
          Length = 183

 Score =  100 bits (248), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 54/123 (43%), Gaps = 9/123 (7%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +    + L++ F+ K T  YP  K     R RG           +RCI+C  C  +CP 
Sbjct: 8   ILKGMGITLKHLFEKKITRQYPEYKREMPERTRG-----MLTVDMDRCISCLQCMRVCPD 62

Query: 76  QAITIESGPRCHDGTRRTVRY----DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
             ITI    R  DG+ +   Y     ID  +C+YC LC E CPV+ I     FE     R
Sbjct: 63  HCITIVQDRRDADGSGKPRPYSMGFMIDDSRCMYCALCVEVCPVNCIYHTEEFEIQAYNR 122

Query: 132 QEL 134
            +L
Sbjct: 123 LDL 125


>gi|158335315|ref|YP_001516487.1| NADH dehydrogenase subunit I [Acaryochloris marina MBIC11017]
 gi|226724528|sp|B0BZW3|NDHI_ACAM1 RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|158305556|gb|ABW27173.1| proton-translocating NAD(P)H-quinone oxidoreductase, chain I
           [Acaryochloris marina MBIC11017]
          Length = 200

 Score =  100 bits (248), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 +   +  +   T+ YP+EK   S RFRG            +CI+C++C  +CP 
Sbjct: 22  IGQGLAVTFDHMKRRPITVQYPYEKLIPSERFRGRIHFEFD-----KCISCEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         ++   Y ID   CI+C  C E CP + +     +E +T  R EL 
Sbjct: 77  NLPVVDWEFNKEIKKKQLKHYSIDFGVCIFCANCVEYCPTNCLSVTEEYELSTFDRHELN 136

Query: 136 YD 137
           +D
Sbjct: 137 FD 138


>gi|149390318|ref|YP_001294149.1| NADH-plastoquinone oxidoreductase subunit I [Chloranthus spicatus]
 gi|156632610|sp|A6MMH3|NDHI_CHLSC RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|146744238|gb|ABQ43310.1| NADH-plastoquinone oxidoreductase subunit I [Chloranthus spicatus]
          Length = 180

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFMITLSHANRLPVTIQYPYEKSITSERFRGRIHFELD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWRLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|168188245|gb|ACA14512.1| NADH dehydrogenase subunit I [Chaptalia nutans]
          Length = 166

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  T  RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITPERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|139390006|ref|YP_001123605.1| NADH dehydrogenase subunit [Draba nemorosa]
 gi|156632613|sp|A4QL75|NDHI_DRANE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|134286808|dbj|BAF50430.1| NADH dehydrogenase subunit [Draba nemorosa]
          Length = 167

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHTNRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++     +   +R + Y ID   CI+CG C E CP + +     +EF+T  R EL 
Sbjct: 77  DLPVVDWKLETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYEFSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|75300830|sp|Q8HVM2|NDHI_PSIGN RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300855|sp|Q8HVP7|NDHI_MARCE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300871|sp|Q8HVR3|NDHI_HYMLE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300876|sp|Q8HVR8|NDHI_HELBG RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|24460592|gb|AAN61736.1| NADH dehydrogenase subunit I [Helenium bigelovii]
 gi|24460602|gb|AAN61741.1| NADH dehydrogenase subunit I [Hymenoxys lemmonii]
 gi|24460634|gb|AAN61757.1| NADH dehydrogenase subunit I [Marshallia caespitosa]
 gi|24460684|gb|AAN61782.1| NADH dehydrogenase subunit I [Psilostrophe gnaphalodes]
          Length = 166

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|11466442|ref|NP_038448.1| NADH dehydrogenase subunit I [Mesostigma viride]
 gi|14194989|sp|Q9MUL2|NDHI_MESVI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|7259585|gb|AAF43886.1|AF166114_98 subunit I of NADH-plastoquinoneoxidoreductase [Mesostigma viride]
          Length = 176

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 53/122 (43%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F +   +  +   TI YP+EK   S RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMVTFDHMNRRAITIQYPYEKLIPSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               +    +     ++   Y ID   CI+CG C E CP + +     +E +   R EL 
Sbjct: 77  NLPVVNWEFQKEKKKKQLQTYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSVYDRHELN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|91203927|emb|CAJ71580.1| strongly similar to NADH dehydrogenase I subunit I [Candidatus
           Kuenenia stuttgartiensis]
          Length = 139

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/134 (36%), Positives = 70/134 (52%), Gaps = 4/134 (2%)

Query: 16  FVGAFFLCLRYFFKAK--TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            V    L L+ F       T +YP  +   + RFRG   L+   +G E+C+AC LC  +C
Sbjct: 5   LVKGLLLTLKRFLNPFTCVTESYPDARPRLAKRFRGLPELQIGEDGREKCVACGLCAKVC 64

Query: 74  PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
           P+Q I+IE         R    Y++D  +CI+CG C+EACP  AI+ G  FE AT  +  
Sbjct: 65  PSQCISIEGAED-EQFRRYPSMYELDSFRCIFCGFCEEACPERAILLGDVFELAT-DKNS 122

Query: 134 LYYDKERLLNNGDR 147
              DKE+LL +  +
Sbjct: 123 GVLDKEKLLESARK 136


>gi|290489788|gb|ADD31301.1| NADH-plastoquinone oxidoreductase subunit I protein [Plumbago
           auriculata]
          Length = 170

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFLITLSHANRLPITIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|168188323|gb|ACA14550.1| NADH dehydrogenase subunit I [Macledium zeyheri]
          Length = 166

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLENDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|75300902|sp|Q8HVU4|NDHI_CORPT RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|24460539|gb|AAN61710.1| NADH dehydrogenase subunit I [Coreopsis petrophiloides]
          Length = 166

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/122 (32%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R V Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWQLETDIRKKRLVNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|75300816|sp|Q8HVK8|NDHI_STESO RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|24460712|gb|AAN61796.1| NADH dehydrogenase subunit I [Steiractinia sodiroi]
          Length = 166

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPM 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|325210979|ref|YP_004286057.1| NADH-plastoquinone oxidoreductase subunit I [Gossypium thurberi]
 gi|290775841|gb|ADD62337.1| NADH-plastoquinone oxidoreductase subunit I [Gossypium thurberi]
          Length = 167

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKFETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|290958203|ref|YP_003489385.1| NADH dehydrogenase subunit NuoI2 [Streptomyces scabiei 87.22]
 gi|260647729|emb|CBG70834.1| NADH dehydrogenase subunit NuoI2 [Streptomyces scabiei 87.22]
          Length = 192

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 55/139 (39%), Gaps = 14/139 (10%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
                   + LR   +   T  YP  +    PR RG   L      EE C  C LC   C
Sbjct: 7   SGLAKGLAVTLRTMTRKTVTAQYPDVQPELPPRTRGVIGLF-----EENCTVCMLCAREC 61

Query: 74  PAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           P   I I+S                     R+ ID   C+YCG+C E CP DA+   P F
Sbjct: 62  PDWCIYIDSHKETVPPSAPGGRERSRNVLDRFAIDFSLCMYCGICIEVCPFDALFWSPEF 121

Query: 125 EFATETRQELYYDKERLLN 143
           E+A     EL +++++L  
Sbjct: 122 EYAETDIHELTHERDKLRE 140


>gi|168188249|gb|ACA14514.1| NADH dehydrogenase subunit I [Chrysanthemoides monilifera]
 gi|168188337|gb|ACA14557.1| NADH dehydrogenase subunit I [Osteospermum asperulum]
          Length = 166

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|75300840|sp|Q8HVN2|NDHI_PERLI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|24460664|gb|AAN61772.1| NADH dehydrogenase subunit I [Perityle lindheimeri]
          Length = 166

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|75300860|sp|Q8HVQ2|NDHI_TRIPN RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300912|sp|Q8HVV4|NDHI_BAHAB RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|24460519|gb|AAN61700.1| NADH dehydrogenase subunit I [Bahia absinthifolia]
 gi|24460624|gb|AAN61752.1| NADH dehydrogenase subunit I [Trilisa paniculata]
 gi|323366670|gb|ADX43804.1| NADH dehydrogenase subunit I [Eupatorium hyssopifolium]
 gi|323366674|gb|ADX43806.1| NADH dehydrogenase subunit I [Garberia heterophylla]
 gi|323366676|gb|ADX43807.1| NADH dehydrogenase subunit I [Garberia heterophylla]
 gi|323366678|gb|ADX43808.1| NADH dehydrogenase subunit I [Garberia heterophylla]
 gi|323366680|gb|ADX43809.1| NADH dehydrogenase subunit I [Carphephorus corymbosus]
 gi|323366682|gb|ADX43810.1| NADH dehydrogenase subunit I [Carphephorus corymbosus]
 gi|323366684|gb|ADX43811.1| NADH dehydrogenase subunit I [Carphephorus corymbosus]
 gi|323366686|gb|ADX43812.1| NADH dehydrogenase subunit I [Carphephorus corymbosus]
 gi|323366688|gb|ADX43813.1| NADH dehydrogenase subunit I [Hartwrightia floridana]
 gi|323366690|gb|ADX43814.1| NADH dehydrogenase subunit I [Hartwrightia floridana]
 gi|323366692|gb|ADX43815.1| NADH dehydrogenase subunit I [Litrisa carnosa]
 gi|323366694|gb|ADX43816.1| NADH dehydrogenase subunit I [Litrisa carnosa]
 gi|323366696|gb|ADX43817.1| NADH dehydrogenase subunit I [Carphephorus pseudoliatris]
 gi|323366698|gb|ADX43818.1| NADH dehydrogenase subunit I [Carphephorus pseudoliatris]
 gi|323366700|gb|ADX43819.1| NADH dehydrogenase subunit I [Carphephorus pseudoliatris]
 gi|323366702|gb|ADX43820.1| NADH dehydrogenase subunit I [Carphephorus pseudoliatris]
 gi|323366704|gb|ADX43821.1| NADH dehydrogenase subunit I [Carphephorus bellidifolius]
 gi|323366706|gb|ADX43822.1| NADH dehydrogenase subunit I [Carphephorus bellidifolius]
 gi|323366708|gb|ADX43823.1| NADH dehydrogenase subunit I [Carphephorus bellidifolius]
 gi|323366710|gb|ADX43824.1| NADH dehydrogenase subunit I [Carphephorus tomentosus]
 gi|323366712|gb|ADX43825.1| NADH dehydrogenase subunit I [Carphephorus tomentosus]
 gi|323366714|gb|ADX43826.1| NADH dehydrogenase subunit I [Carphephorus tomentosus]
 gi|323366716|gb|ADX43827.1| NADH dehydrogenase subunit I [Carphephorus tomentosus]
 gi|323366718|gb|ADX43828.1| NADH dehydrogenase subunit I [Liatris spicata]
 gi|323366720|gb|ADX43829.1| NADH dehydrogenase subunit I [Liatris elegantula]
 gi|323366722|gb|ADX43830.1| NADH dehydrogenase subunit I [Liatris microcephala]
 gi|323366724|gb|ADX43831.1| NADH dehydrogenase subunit I [Liatris squarrulosa]
 gi|323366726|gb|ADX43832.1| NADH dehydrogenase subunit I [Liatris aspera]
 gi|323366728|gb|ADX43833.1| NADH dehydrogenase subunit I [Liatris microcephala]
 gi|323366730|gb|ADX43834.1| NADH dehydrogenase subunit I [Liatris elegans]
 gi|323366732|gb|ADX43835.1| NADH dehydrogenase subunit I [Liatris spicata]
 gi|323366734|gb|ADX43836.1| NADH dehydrogenase subunit I [Liatris tenuifolia]
 gi|323366736|gb|ADX43837.1| NADH dehydrogenase subunit I [Trilisa paniculata]
 gi|323366738|gb|ADX43838.1| NADH dehydrogenase subunit I [Trilisa paniculata]
 gi|323366740|gb|ADX43839.1| NADH dehydrogenase subunit I [Trilisa paniculata]
 gi|323366742|gb|ADX43840.1| NADH dehydrogenase subunit I [Trilisa paniculata]
 gi|323366744|gb|ADX43841.1| NADH dehydrogenase subunit I [Trilisa paniculata]
 gi|323366746|gb|ADX43842.1| NADH dehydrogenase subunit I [Trilisa odoratissima]
 gi|323366748|gb|ADX43843.1| NADH dehydrogenase subunit I [Trilisa odoratissima]
 gi|323366750|gb|ADX43844.1| NADH dehydrogenase subunit I [Trilisa odoratissima]
 gi|323366752|gb|ADX43845.1| NADH dehydrogenase subunit I [Trilisa odoratissima]
 gi|323366754|gb|ADX43846.1| NADH dehydrogenase subunit I [Trilisa odoratissima]
 gi|323366756|gb|ADX43847.1| NADH dehydrogenase subunit I [Trilisa odoratissima]
 gi|323366758|gb|ADX43848.1| NADH dehydrogenase subunit I [Trilisa odoratissima]
          Length = 166

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|291303392|ref|YP_003514670.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Stackebrandtia nassauensis DSM 44728]
 gi|290572612|gb|ADD45577.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Stackebrandtia nassauensis DSM 44728]
          Length = 168

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 44/136 (32%), Positives = 57/136 (41%), Gaps = 13/136 (9%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
                   + L+   K   T  YP E     PR RG  AL+     E  C  C LC   C
Sbjct: 6   SGLAKGLAVTLKTMTKPSHTHQYPDESPELPPRTRGVIALQ-----EANCTVCMLCAREC 60

Query: 74  PAQAITIESGPRC--------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           P   I I+S                    ++DID   C+YCG+C E CP DA+   P FE
Sbjct: 61  PDWCIYIDSHKETVEVPGAARPRQRNVLDKFDIDFSLCMYCGICIEVCPFDALFWSPEFE 120

Query: 126 FATETRQELYYDKERL 141
           +A    + L +DK+RL
Sbjct: 121 YAEGDIRNLLHDKDRL 136


>gi|114330024|ref|YP_740705.1| NADH-plastoquinone oxidoreductase subunit I [Nandina domestica]
 gi|122165913|sp|Q09FQ6|NDHI_NANDO RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|114054526|gb|ABI49919.1| NADH-plastoquinone oxidoreductase subunit I [Nandina domestica]
          Length = 180

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|52220865|ref|YP_087020.1| NADH dehydrogenase subunit I [Panax ginseng]
 gi|75289351|sp|Q68RV2|NDHI_PANGI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|51235368|gb|AAT98564.1| NADH dehydrogenase 18 kDa subunit [Panax ginseng]
          Length = 167

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLEMDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|75300873|sp|Q8HVR5|NDHI_HULAL RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|24460598|gb|AAN61739.1| NADH dehydrogenase subunit I [Hulsea algida]
          Length = 166

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGLIITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|168188311|gb|ACA14544.1| NADH dehydrogenase subunit I [Jungia polita]
          Length = 166

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPM 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|168188258|gb|ACA14518.1| NADH dehydrogenase subunit I [Dasyphyllum reticulatum]
          Length = 166

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHSNRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|75300905|sp|Q8HVU7|NDHI_CHASO RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|24460533|gb|AAN61707.1| NADH dehydrogenase subunit I [Chamaechaenactis scaposa]
          Length = 166

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK   S RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLIISERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|168188205|gb|ACA14492.1| NADH dehydrogenase subunit I [Achillea millefolium]
 gi|168188333|gb|ACA14555.1| NADH dehydrogenase subunit I [Oncosiphon grandiflorum]
          Length = 166

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|292655142|ref|YP_003535039.1| NADH dehydrogenase-like complex subunit I [Haloferax volcanii DS2]
 gi|291370688|gb|ADE02915.1| NADH dehydrogenase-like complex subunit I [Haloferax volcanii DS2]
          Length = 153

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 46/130 (35%), Positives = 68/130 (52%), Gaps = 11/130 (8%)

Query: 13  LKEFVGAFFLCLRYFF-KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71
           +   +    + L++       T+ YP      SPRFRG H        +ERCI C+ CE 
Sbjct: 1   MIGILKGMAVTLKHALDGQTFTVEYPETAPEVSPRFRGVHKF-----SQERCIWCRQCEN 55

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           +CP   I I    +     R   +Y++ + +CIYC LC+E CPVDAI+   NFEF  +T+
Sbjct: 56  VCPNDTIQIVQDDQ-----RNGEQYNLHIGQCIYCRLCEEVCPVDAILLTQNFEFTADTK 110

Query: 132 QELYYDKERL 141
            +  Y+KE+L
Sbjct: 111 NDFVYNKEQL 120


>gi|75300896|sp|Q8HVT8|NDHI_DIMHO RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|24460551|gb|AAN61716.1| NADH dehydrogenase subunit I [Dimeresia howellii]
          Length = 166

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHVNRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|168188272|gb|ACA14525.1| NADH dehydrogenase subunit I [Echinops ritro]
          Length = 166

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|75300832|sp|Q8HVM4|NDHI_PSAAN RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300836|sp|Q8HVM8|NDHI_PHABO RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300868|sp|Q8HVR0|NDHI_INUBR RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300910|sp|Q8HVV2|NDHI_BLEZA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300913|sp|Q8HVV5|NDHI_ATHGP RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|24460517|gb|AAN61699.1| NADH dehydrogenase subunit I [Athroisma gracile subsp. psyllioides]
 gi|24460523|gb|AAN61702.1| NADH dehydrogenase subunit I [Blepharispermum zanguebaricum]
 gi|24460608|gb|AAN61744.1| NADH dehydrogenase subunit I [Inula britannica]
 gi|24460672|gb|AAN61776.1| NADH dehydrogenase subunit I [Phaneroglossa bolusii]
 gi|24460680|gb|AAN61780.1| NADH dehydrogenase subunit I [Psathyrotes annua]
 gi|168188213|gb|ACA14496.1| NADH dehydrogenase subunit I [Adenocaulon chilense]
 gi|168188227|gb|ACA14503.1| NADH dehydrogenase subunit I [Baccharis neglecta]
 gi|168188231|gb|ACA14505.1| NADH dehydrogenase subunit I [Berkheya purpurea]
 gi|168188233|gb|ACA14506.1| NADH dehydrogenase subunit I [Brachyclados caespitosus]
 gi|168188241|gb|ACA14510.1| NADH dehydrogenase subunit I [Centratherum punctatum]
 gi|168188247|gb|ACA14513.1| NADH dehydrogenase subunit I [Chimantaea humilis]
 gi|168188264|gb|ACA14521.1| NADH dehydrogenase subunit I [Dinoseris salicifolia]
 gi|168188266|gb|ACA14522.1| NADH dehydrogenase subunit I [Dolichlasium lagascae]
 gi|168188274|gb|ACA14526.1| NADH dehydrogenase subunit I [Eremanthus erythropappus]
 gi|168188276|gb|ACA14527.1| NADH dehydrogenase subunit I [Erigeron tenuis]
 gi|168188292|gb|ACA14535.1| NADH dehydrogenase subunit I [Gorteria diffusa]
 gi|168188299|gb|ACA14538.1| NADH dehydrogenase subunit I [Hesperomannia arbuscula]
 gi|168188303|gb|ACA14540.1| NADH dehydrogenase subunit I [Hoplophyllum spinosum]
 gi|168188309|gb|ACA14543.1| NADH dehydrogenase subunit I [Ianthopappus corymbosus]
 gi|168188313|gb|ACA14545.1| NADH dehydrogenase subunit I [Leucheria thermarum]
 gi|168188315|gb|ACA14546.1| NADH dehydrogenase subunit I [Leucomeris spectabilis]
 gi|168188317|gb|ACA14547.1| NADH dehydrogenase subunit I [Sinclairia palmeri]
 gi|168188329|gb|ACA14553.1| NADH dehydrogenase subunit I [Nouelia insignis]
 gi|168188331|gb|ACA14554.1| NADH dehydrogenase subunit I [Oldenburgia grandis]
 gi|168188344|gb|ACA14560.1| NADH dehydrogenase subunit I [Pertya scandens]
 gi|168188346|gb|ACA14561.1| NADH dehydrogenase subunit I [Platycarphella carlinoides]
 gi|168188350|gb|ACA14563.1| NADH dehydrogenase subunit I [Pluchea carolinensis]
 gi|168188354|gb|ACA14565.1| NADH dehydrogenase subunit I [Relhania calycina]
 gi|168188358|gb|ACA14567.1| NADH dehydrogenase subunit I [Scolymus maculatus]
 gi|168188360|gb|ACA14568.1| NADH dehydrogenase subunit I [Senecio polypodioides]
 gi|168188364|gb|ACA14570.1| NADH dehydrogenase subunit I [Stenopadus talaumifolius]
 gi|168188366|gb|ACA14571.1| NADH dehydrogenase subunit I [Stifftia chrysantha]
 gi|168188370|gb|ACA14573.1| NADH dehydrogenase subunit I [Stomatochaeta condensata]
 gi|168188372|gb|ACA14574.1| NADH dehydrogenase subunit I [Syncarpha vestita]
 gi|168188374|gb|ACA14575.1| NADH dehydrogenase subunit I [Tarchonanthus camphoratus]
 gi|168188380|gb|ACA14578.1| NADH dehydrogenase subunit I [Ursinia speciosa]
 gi|168188383|gb|ACA14579.1| NADH dehydrogenase subunit I [Wunderlichia mirabilis]
 gi|170665735|gb|ACB29407.1| NADH dehydrogenase subunit I [Psacalium paucicapitatum]
          Length = 166

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|75300877|sp|Q8HVR9|NDHI_GUATU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|24460590|gb|AAN61735.1| NADH dehydrogenase subunit I [Guardiola tulocarpus]
          Length = 166

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|168188268|gb|ACA14523.1| NADH dehydrogenase subunit I [Doniophyton anomalum]
          Length = 166

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|167391856|ref|YP_001671736.1| NADH dehydrogenase subunit I [Carica papaya]
 gi|166344183|gb|ABY86833.1| NADH-plastoquinone oxidoreductase subunit I [Carica papaya]
          Length = 167

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFIITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  NLPVVDWKFETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|170784788|ref|YP_001718704.1| NADH-plastoquinone oxidoreductase subunit I [Trachelium caeruleum]
 gi|156598753|gb|ABU85631.1| NADH-plastoquinone oxidoreductase subunit I [Trachelium caeruleum]
 gi|157267536|gb|ABV26529.1| NADH-plastoquinone oxidoreductase subunit I [Trachelium caeruleum]
          Length = 167

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLMTSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R +L 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHQLN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|75300888|sp|Q8HVT0|NDHI_ENYSE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|24460568|gb|AAN61724.1| NADH dehydrogenase subunit I [Enydra sessilis]
          Length = 166

 Score = 99.8 bits (247), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|168188284|gb|ACA14531.1| NADH dehydrogenase subunit I [Gamochaeta pensylvanica]
          Length = 166

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|75300803|sp|Q8HVJ5|NDHI_BAHTO RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|24460738|gb|AAN61809.1| NADH dehydrogenase subunit I [Bahiopsis tomentosa]
          Length = 166

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|75300814|sp|Q8HVK6|NDHI_SYNNO RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300863|sp|Q8HVQ5|NDHI_LASMA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300898|sp|Q8HVU0|NDHI_DELBI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300899|sp|Q8HVU1|NDHI_DAMCA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300908|sp|Q8HVV0|NDHI_CALVA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|24460527|gb|AAN61704.1| NADH dehydrogenase subunit I [Calyptocarpus vialis]
 gi|24460545|gb|AAN61713.1| NADH dehydrogenase subunit I [Damnxanthodium calvum]
 gi|24460547|gb|AAN61714.1| NADH dehydrogenase subunit I [Delilia biflora]
 gi|24460618|gb|AAN61749.1| NADH dehydrogenase subunit I [Lasianthaea macrocephala]
 gi|24460716|gb|AAN61798.1| NADH dehydrogenase subunit I [Synedrella nodiflora]
          Length = 166

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|114107187|ref|YP_740171.1| NADH-plastoquinone oxidoreductase subunit I [Daucus carota]
 gi|122233825|sp|Q0G9Q8|NDHI_DAUCA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|113200962|gb|ABI32478.1| NADH-plastoquinone oxidoreductase subunit I [Daucus carota]
          Length = 164

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHASRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLEKDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|75300906|sp|Q8HVU8|NDHI_CHAPD RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|24460531|gb|AAN61706.1| NADH dehydrogenase subunit I [Chaetymenia peduncularis]
          Length = 166

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|197131392|gb|ACH47214.1| NADH-plastoquinone oxidoreductase subunit I [Pelargonium
           cotyledonis]
          Length = 173

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/126 (30%), Positives = 59/126 (46%), Gaps = 5/126 (3%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +  + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSLMITLSHANRFPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKFETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YDKERL 141
           Y++  L
Sbjct: 137 YNQTAL 142


>gi|94502542|ref|YP_588169.1| NADH dehydrogenase subunit I [Helianthus annuus]
 gi|75300797|sp|Q8HVI9|NDHI_ZINJU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300799|sp|Q8HVJ1|NDHI_ZALME RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300800|sp|Q8HVJ2|NDHI_ARNDE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300802|sp|Q8HVJ4|NDHI_VILAC RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300804|sp|Q8HVJ6|NDHI_VERJA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300806|sp|Q8HVJ8|NDHI_VARMX RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300811|sp|Q8HVK3|NDHI_TETRE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300812|sp|Q8HVK4|NDHI_TETOR RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300813|sp|Q8HVK5|NDHI_TARER RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300817|sp|Q8HVK9|NDHI_SQUKU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300818|sp|Q8HVL0|NDHI_SPIUR RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300820|sp|Q8HVL2|NDHI_SMAMI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300823|sp|Q8HVL5|NDHI_RUMPE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300824|sp|Q8HVL6|NDHI_RUDHI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300825|sp|Q8HVL7|NDHI_ROJSU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300828|sp|Q8HVM0|NDHI_RATCO RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300834|sp|Q8HVM6|NDHI_PODEM RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300837|sp|Q8HVM9|NDHI_PEUSC RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300841|sp|Q8HVN3|NDHI_PERCD RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300848|sp|Q8HVP0|NDHI_NEULO RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300849|sp|Q8HVP1|NDHI_MONRV RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300850|sp|Q8HVP2|NDHI_MONGR RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300851|sp|Q8HVP3|NDHI_MONPA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300856|sp|Q8HVP8|NDHI_MADSA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300864|sp|Q8HVQ6|NDHI_LAGRA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300865|sp|Q8HVQ7|NDHI_KINPA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300869|sp|Q8HVR1|NDHI_IDIQU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300870|sp|Q8HVR2|NDHI_ICHTE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300875|sp|Q8HVR7|NDHI_HELAN RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300878|sp|Q8HVS0|NDHI_GRERE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300879|sp|Q8HVS1|NDHI_GALQU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300880|sp|Q8HVS2|NDHI_GALPT RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300881|sp|Q8HVS3|NDHI_FLOPE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300882|sp|Q8HVS4|NDHI_FLARA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300883|sp|Q8HVS5|NDHI_EUTPA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300886|sp|Q8HVS8|NDHI_CONNE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300892|sp|Q8HVT4|NDHI_DYSTE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300893|sp|Q8HVT5|NDHI_DYSMI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300894|sp|Q8HVT6|NDHI_DUGME RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300897|sp|Q8HVT9|NDHI_DESFU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300900|sp|Q8HVU2|NDHI_DAHCO RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300901|sp|Q8HVU3|NDHI_CYMVE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300904|sp|Q8HVU6|NDHI_CHRHE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300911|sp|Q8HVV3|NDHI_BEBJU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300914|sp|Q8HVV6|NDHI_ARNMO RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|24460507|gb|AAN61694.1| NADH dehydrogenase subunit I [Alloispermum scabrifolium]
 gi|24460509|gb|AAN61695.1| NADH dehydrogenase subunit I [Amblyopappus pusillus]
 gi|24460515|gb|AAN61698.1| NADH dehydrogenase subunit I [Arnica mollis]
 gi|24460521|gb|AAN61701.1| NADH dehydrogenase subunit I [Bebbia juncea]
 gi|24460535|gb|AAN61708.1| NADH dehydrogenase subunit I [Chromolepis heterophylla]
 gi|24460541|gb|AAN61711.1| NADH dehydrogenase subunit I [Cymophora venezuelensis]
 gi|24460543|gb|AAN61712.1| NADH dehydrogenase subunit I [Dahlia coccinea]
 gi|24460549|gb|AAN61715.1| NADH dehydrogenase subunit I [Desmanthodium fruticosum]
 gi|24460555|gb|AAN61718.1| NADH dehydrogenase subunit I [Dugesia mexicana]
 gi|24460557|gb|AAN61719.1| NADH dehydrogenase subunit I [Dyscritothamnus mirandae]
 gi|24460559|gb|AAN61720.1| NADH dehydrogenase subunit I [Thymophylla tenuiloba]
 gi|24460572|gb|AAN61726.1| NADH dehydrogenase subunit I [Constancea nevinii]
 gi|24460578|gb|AAN61729.1| NADH dehydrogenase subunit I [Eutetras palmeri]
 gi|24460580|gb|AAN61730.1| NADH dehydrogenase subunit I [Flaveria ramosissima]
 gi|24460582|gb|AAN61731.1| NADH dehydrogenase subunit I [Florestina pedata]
 gi|24460584|gb|AAN61732.1| NADH dehydrogenase subunit I [Galeana pratensis]
 gi|24460586|gb|AAN61733.1| NADH dehydrogenase subunit I [Galinsoga quadriradiata]
 gi|24460588|gb|AAN61734.1| NADH dehydrogenase subunit I [Greenmaniella resinosa]
 gi|24460594|gb|AAN61737.1| NADH dehydrogenase subunit I [Helianthus annuus]
 gi|24460604|gb|AAN61742.1| NADH dehydrogenase subunit I [Ichthyothere terminalis]
 gi|24460606|gb|AAN61743.1| NADH dehydrogenase subunit I [Idiopappus quitensis]
 gi|24460614|gb|AAN61747.1| NADH dehydrogenase subunit I [Kingianthus paradoxus]
 gi|24460616|gb|AAN61748.1| NADH dehydrogenase subunit I [Lagophylla ramosissima]
 gi|24460632|gb|AAN61756.1| NADH dehydrogenase subunit I [Madia sativa]
 gi|24460642|gb|AAN61761.1| NADH dehydrogenase subunit I [Monactis pallatangensis]
 gi|24460644|gb|AAN61762.1| NADH dehydrogenase subunit I [Monolopia gracilens]
 gi|24460646|gb|AAN61763.1| NADH dehydrogenase subunit I [Montanoa revealii]
 gi|24460648|gb|AAN61764.1| NADH dehydrogenase subunit I [Neurolaena lobata]
 gi|24460662|gb|AAN61771.1| NADH dehydrogenase subunit I [Pericome caudata]
 gi|24460670|gb|AAN61775.1| NADH dehydrogenase subunit I [Peucephyllum schottii]
 gi|24460676|gb|AAN61778.1| NADH dehydrogenase subunit I [Podachaenium eminens]
 gi|24460688|gb|AAN61784.1| NADH dehydrogenase subunit I [Ratibida columnifera]
 gi|24460694|gb|AAN61787.1| NADH dehydrogenase subunit I [Rojasianthe superba]
 gi|24460696|gb|AAN61788.1| NADH dehydrogenase subunit I [Rudbeckia hirta]
 gi|24460698|gb|AAN61789.1| NADH dehydrogenase subunit I [Rumfordia penninervis]
 gi|24460704|gb|AAN61792.1| NADH dehydrogenase subunit I [Smallanthus microcephalus]
 gi|24460708|gb|AAN61794.1| NADH dehydrogenase subunit I [Spilanthes urens]
 gi|24460710|gb|AAN61795.1| NADH dehydrogenase subunit I [Squamopappus skutchii]
 gi|24460718|gb|AAN61799.1| NADH dehydrogenase subunit I [Tagetes erecta]
 gi|24460720|gb|AAN61800.1| NADH dehydrogenase subunit I [Tetrachyron orizabensis]
 gi|24460722|gb|AAN61801.1| NADH dehydrogenase subunit I [Tetragonotheca repanda]
 gi|24460732|gb|AAN61806.1| NADH dehydrogenase subunit I [Varilla mexicana]
 gi|24460736|gb|AAN61808.1| NADH dehydrogenase subunit I [Verbesina jacksonii]
 gi|24460740|gb|AAN61810.1| NADH dehydrogenase subunit I [Villanova achilleoides]
 gi|24460744|gb|AAN61812.1| NADH dehydrogenase subunit I [Arnica dealbata]
 gi|24460746|gb|AAN61813.1| NADH dehydrogenase subunit I [Zaluzania megacephala]
 gi|24460750|gb|AAN61815.1| NADH dehydrogenase subunit I [Zinnia juniperifolia]
 gi|88656946|gb|ABD47197.1| NADH-plastoquinone oxidoreductase subunit I [Helianthus annuus]
          Length = 166

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|75300916|sp|Q8HVV8|NDHI_AMBTR RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|24460511|gb|AAN61696.1| NADH dehydrogenase subunit I [Ambrosia trifida]
          Length = 166

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|168188297|gb|ACA14537.1| NADH dehydrogenase subunit I [Hecastocleis shockleyi]
          Length = 166

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++     +   +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|75300891|sp|Q8HVT3|NDHI_EATNI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|24460561|gb|AAN61721.1| NADH dehydrogenase subunit I [Eatonella nivea]
          Length = 166

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++     +   +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|75300915|sp|Q8HVV7|NDHI_APHJA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|24460513|gb|AAN61697.1| NADH dehydrogenase subunit I [Aphanactis jamesoniana]
          Length = 166

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|153004163|ref|YP_001378488.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Anaeromyxobacter sp. Fw109-5]
 gi|166918784|sp|A7H9V8|NUOI_ANADF RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|152027736|gb|ABS25504.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. Fw109-5]
          Length = 238

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 49/181 (27%), Positives = 73/181 (40%), Gaps = 31/181 (17%)

Query: 11  LFLKEFVGAFFLCLRYFFKA-----------------------KTTINYPFEKGSTSPRF 47
           ++  E +       ++F +                          T+ YP E+    P +
Sbjct: 16  MYFPEIIRGIGAVTKHFLRNLFFTRDKNPDILERRRGEFGWADNVTLQYPEERAPYPPGY 75

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT-RRTVRYDIDMIKCIYC 106
           RG H L    +G  RC+AC +C   CPAQ I IE+G    D   +  V++ ID ++CI C
Sbjct: 76  RGLHRLVPREDGRARCVACYMCATACPAQCIYIEAGEYADDPIEKYPVKFVIDELRCIVC 135

Query: 107 GLCQEACPVDAIVE-GPNFEFATETRQELYYDKERLLNN------GDRWESEIVRNIVTD 159
           G C EACP DAI          +  R    +D++RLL         D W      +I  +
Sbjct: 136 GFCVEACPKDAIRMDSGEHTPPSYERGAQIWDEKRLLRGPPVSYQYDPWLRRGSPSIPAE 195

Query: 160 S 160
            
Sbjct: 196 K 196


>gi|148657102|ref|YP_001277307.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Roseiflexus sp. RS-1]
 gi|148569212|gb|ABQ91357.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Roseiflexus
           sp. RS-1]
          Length = 440

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 56/151 (37%), Gaps = 16/151 (10%)

Query: 16  FVGAFFLCLRYF-------FKAK------TTINYPFEKGSTSPRFRGEHALRRYPN-GEE 61
            +    +  R+F        +         T+ YP E+      FR    L      G E
Sbjct: 35  LLTGLDVVFRHFRDALTRKLEKPSQQTGVFTVQYPEERLKLPEAFRNFPILLYDDETGHE 94

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVR--YDIDMIKCIYCGLCQEACPVDAIV 119
            C +C  C+ ICP Q I +        G        + I+   C+ CGLC E CP DAI 
Sbjct: 95  LCTSCFQCQRICPPQVIHMTQARDPATGKAVPAVAEFLIEYDACMSCGLCAEVCPFDAIK 154

Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWES 150
               FEF+T+    L  +K  L      +E 
Sbjct: 155 MDHEFEFSTDVHGGLTINKAGLNRPISYYEK 185


>gi|75300847|sp|Q8HVN9|NDHI_OBLMI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|24460650|gb|AAN61765.1| NADH dehydrogenase subunit I [Oblivia mikanioides]
          Length = 166

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|115502273|sp|Q8HVK0|NDHI_TRIBB RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|24460726|gb|AAN61803.1| NADH dehydrogenase subunit I [Trichocoryne connata]
          Length = 166

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/122 (32%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++     H   +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETHIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|239980101|ref|ZP_04702625.1| NADH dehydrogenase I chain I [Streptomyces albus J1074]
 gi|291451955|ref|ZP_06591345.1| NADH-quinone oxidoreductase subunit I 2 [Streptomyces albus J1074]
 gi|291354904|gb|EFE81806.1| NADH-quinone oxidoreductase subunit I 2 [Streptomyces albus J1074]
          Length = 224

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 41/137 (29%), Positives = 56/137 (40%), Gaps = 14/137 (10%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
                   + LR   K   T  YP  +    PR RG   L      EE C  C LC   C
Sbjct: 15  SGLAKGLAVTLRTMTKKTVTAQYPETQPDLPPRTRGVIGLF-----EENCTVCMLCAREC 69

Query: 74  PAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           P   I I+S                     R+ ID   C+YCG+C E CP DA+   P F
Sbjct: 70  PDWCIYIDSHKETVPPAAPGGRERSRNVLDRFAIDFSLCMYCGICIEVCPFDALFWSPEF 129

Query: 125 EFATETRQELYYDKERL 141
           E+A    ++L +++++L
Sbjct: 130 EYAETDIRDLTHERDKL 146


>gi|24460654|gb|AAN61767.1| NADH dehydrogenase subunit I [Oxypappus scaber]
          Length = 166

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|75300921|sp|Q8HVW3|NDHI_ACAAU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|24460501|gb|AAN61691.1| NADH dehydrogenase subunit I [Acanthospermum australe]
          Length = 166

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFTITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|295837075|ref|ZP_06824008.1| NADH-quinone oxidoreductase subunit I 2 [Streptomyces sp. SPB74]
 gi|295826349|gb|EDY44115.2| NADH-quinone oxidoreductase subunit I 2 [Streptomyces sp. SPB74]
          Length = 208

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 40/139 (28%), Positives = 54/139 (38%), Gaps = 14/139 (10%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
                   + LR   +   T  YP       PR RG   L      EE C  C LC   C
Sbjct: 7   TGLAKGLAVTLRTMTRKSVTAQYPDTLPPLPPRSRGVIGLF-----EENCTVCMLCAREC 61

Query: 74  PAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           P   I I+S                     R+ ID   C+YCG+C E CP DA+   P F
Sbjct: 62  PDWCIYIDSHKETVPPAAPGGRERSRNVLDRFAIDFSLCMYCGICIEVCPFDALFWSPEF 121

Query: 125 EFATETRQELYYDKERLLN 143
           E+A     +L +++++L  
Sbjct: 122 EYAETDVHDLTHERDKLRE 140


>gi|114329801|ref|YP_740619.1| NADH-plastoquinone oxidoreductase subunit I [Platanus occidentalis]
 gi|122165989|sp|Q09FZ2|NDHI_PLAOC RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|114054439|gb|ABI49833.1| NADH-plastoquinone oxidoreductase subunit I [Platanus occidentalis]
          Length = 180

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               +          +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVNWRLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|313199751|ref|YP_004021365.1| NADH-plastoquinone oxidoreductase subunit I [Theobroma cacao]
 gi|309321315|gb|ADO64858.1| NADH-plastoquinone oxidoreductase subunit I [Theobroma cacao]
 gi|328924832|gb|ADO64943.2| NADH-plastoquinone oxidoreductase subunit I [Theobroma cacao]
          Length = 167

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKFETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|168188255|gb|ACA14517.1| NADH dehydrogenase subunit I [Corymbium glabrum]
          Length = 166

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|75300884|sp|Q8HVS6|NDHI_COETI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|24460576|gb|AAN61728.1| NADH dehydrogenase subunit I [Coespeletia timotensis]
          Length = 166

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|33860719|ref|NP_892280.1| NADH dehydrogenase subunit I [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|81711989|sp|Q7TUH1|NDHI_PROMP RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|33633661|emb|CAE18618.1| putative NADH Dehydrogenase subunit [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 208

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/144 (27%), Positives = 62/144 (43%), Gaps = 13/144 (9%)

Query: 1   MRIFRCNVSFLFLKEFVG-------AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL 53
           M+ F   V+  ++KE           F +   +  +   T+ YP+EK   S R+RG    
Sbjct: 1   MKDFLQKVNS-YIKEAFSAGKYLYDGFTVTFDHLRRRPVTVQYPYEKLIPSERYRGRI-- 57

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                  ++CIAC++C  +CP     ++         +    Y ID   CI+CG C E C
Sbjct: 58  ---HYEFDKCIACEVCVRVCPINLPVVDWVMNKETKKKELRNYSIDFGVCIFCGNCVEYC 114

Query: 114 PVDAIVEGPNFEFATETRQELYYD 137
           P + +     +E AT  R  L +D
Sbjct: 115 PTNCLSMTEEYELATFDRHNLNFD 138


>gi|168188262|gb|ACA14520.1| NADH dehydrogenase subunit I [Dimorphotheca sinuata]
          Length = 166

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  T  RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFIITLSHANRLPVTIQYPYEKLITPERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|168188215|gb|ACA14497.1| NADH dehydrogenase subunit I [Adenocaulon bicolor]
          Length = 166

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|75300829|sp|Q8HVM1|NDHI_RAIAR RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|24460686|gb|AAN61783.1| NADH dehydrogenase subunit I [Raillardella argentea]
          Length = 166

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLENDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|75295815|sp|Q7I7Y4|NDHI_ZEXSE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300798|sp|Q8HVJ0|NDHI_WEDTE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300801|sp|Q8HVJ3|NDHI_TILBA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300810|sp|Q8HVK2|NDHI_SPHTR RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300819|sp|Q8HVL1|NDHI_PERMO RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300844|sp|Q8HVN6|NDHI_MELNV RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300853|sp|Q8HVP5|NDHI_LUNJA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300857|sp|Q8HVP9|NDHI_LIPIN RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300859|sp|Q8HVQ1|NDHI_ECLPR RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300895|sp|Q8HVT7|NDHI_DIMVE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300903|sp|Q8HVU5|NDHI_CLIAL RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|115502271|sp|Q8HVN7|NDHI_OXYSB RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|24460537|gb|AAN61709.1| NADH dehydrogenase subunit I [Clibadium alatum]
 gi|24460553|gb|AAN61717.1| NADH dehydrogenase subunit I [Dimerostemma vestitum]
 gi|24460626|gb|AAN61753.1| NADH dehydrogenase subunit I [Eclipta prostrata]
 gi|24460630|gb|AAN61755.1| NADH dehydrogenase subunit I [Lipochaeta integrifolia]
 gi|24460638|gb|AAN61759.1| NADH dehydrogenase subunit I [Lundellianthus jaliscensis]
 gi|24460656|gb|AAN61768.1| NADH dehydrogenase subunit I [Melanthera nivea]
 gi|24460668|gb|AAN61774.1| NADH dehydrogenase subunit I [Oyedaea verbesinoides]
 gi|24460706|gb|AAN61793.1| NADH dehydrogenase subunit I [Perymenium macrocephalum]
 gi|24460724|gb|AAN61802.1| NADH dehydrogenase subunit I [Sphagneticola trilobata]
 gi|24460742|gb|AAN61811.1| NADH dehydrogenase subunit I [Tilesia baccata]
 gi|24460748|gb|AAN61814.1| NADH dehydrogenase subunit I [Wedelia tegetis]
 gi|27533113|gb|AAO18347.1| NADH dehydrogenase subunit I [Zexmenia serrata]
          Length = 166

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|75300890|sp|Q8HVT2|NDHI_ENCCL RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|24460564|gb|AAN61722.1| NADH dehydrogenase subunit I [Encelia californica]
          Length = 166

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|161784247|ref|YP_001595563.1| NADH dehydrogenase 18kD subunit [Lemna minor]
 gi|88696825|gb|ABD48550.1| NADH dehydrogenase 18kD subunit [Lemna minor]
          Length = 174

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFIITLSHANRLPVTIQYPYEKSITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++     +   ++ + Y ID   CI+CG C E CP + +     +E +   R EL 
Sbjct: 77  NLPVVDWRLETNIKKKQLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSAYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|75300833|sp|Q8HVM5|NDHI_POLCN RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|24460678|gb|AAN61779.1| NADH dehydrogenase subunit I [Polymnia canadensis]
          Length = 166

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|75300854|sp|Q8HVP6|NDHI_MELLU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|24460636|gb|AAN61758.1| NADH dehydrogenase subunit I [Melampodium leucanthum]
          Length = 166

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y 
Sbjct: 137 YT 138


>gi|168188223|gb|ACA14501.1| NADH dehydrogenase subunit I [Arctotis hirsuta]
 gi|168188301|gb|ACA14539.1| NADH dehydrogenase subunit I [Heterolepis aliena]
          Length = 166

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|81176305|ref|YP_398382.1| NADH dehydrogenase subunit I [Lactuca sativa]
 gi|110287699|sp|Q332S3|NDHI_LACSA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|78675223|dbj|BAE47649.1| NADH dehydrogenase subunit I [Lactuca sativa]
 gi|88657034|gb|ABD47284.1| NADH-plastoquinone oxidoreductase subunit I [Lactuca sativa]
 gi|168188209|gb|ACA14494.1| NADH dehydrogenase subunit I [Acourtia turbinata]
 gi|168188211|gb|ACA14495.1| NADH dehydrogenase subunit I [Richterago angustifolia]
 gi|168188217|gb|ACA14498.1| NADH dehydrogenase subunit I [Ainsliaea apiculata]
 gi|168188219|gb|ACA14499.1| NADH dehydrogenase subunit I [Ainsliaea macrocephala]
 gi|168188221|gb|ACA14500.1| NADH dehydrogenase subunit I [Aphyllocladus spartioides]
 gi|168188235|gb|ACA14507.1| NADH dehydrogenase subunit I [Brachylaena elliptica]
 gi|168188243|gb|ACA14511.1| NADH dehydrogenase subunit I [Chaetanthera pentacaenoides]
 gi|168188253|gb|ACA14516.1| NADH dehydrogenase subunit I [Cnicothamnus lorentzii]
 gi|168188288|gb|ACA14533.1| NADH dehydrogenase subunit I [Gochnatia hiriartiana]
 gi|168188294|gb|ACA14536.1| NADH dehydrogenase subunit I [Gundelia tournefortii]
 gi|168188305|gb|ACA14541.1| NADH dehydrogenase subunit I [Hyalis argentea]
 gi|168188307|gb|ACA14542.1| NADH dehydrogenase subunit I [Hyaloseris rubicunda]
 gi|168188319|gb|ACA14548.1| NADH dehydrogenase subunit I [Lophopappus cuneatus]
 gi|168188321|gb|ACA14549.1| NADH dehydrogenase subunit I [Lycoseris crocata]
 gi|168188327|gb|ACA14552.1| NADH dehydrogenase subunit I [Nassauvia pygmaea]
 gi|168188348|gb|ACA14562.1| NADH dehydrogenase subunit I [Plazia daphnoides]
 gi|168188352|gb|ACA14564.1| NADH dehydrogenase subunit I [Proustia cuneifolia]
 gi|168188362|gb|ACA14569.1| NADH dehydrogenase subunit I [Sonchus oleraceus]
 gi|168188368|gb|ACA14572.1| NADH dehydrogenase subunit I [Stokesia laevis]
 gi|168188376|gb|ACA14576.1| NADH dehydrogenase subunit I [Trichocline boecheri]
 gi|168188378|gb|ACA14577.1| NADH dehydrogenase subunit I [Trixis divaricata]
 gi|168188385|gb|ACA14580.1| NADH dehydrogenase subunit I [Youngia japonica]
 gi|223712684|gb|ACN22059.1| NADH dehydrogenase subunit I [Catamixis baccharoides]
          Length = 166

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|75300907|sp|Q8HVU9|NDHI_CHAST RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|24460529|gb|AAN61705.1| NADH dehydrogenase subunit I [Chaenactis santolinoides]
          Length = 166

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   T+ YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTVQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|48478735|ref|YP_024342.1| NADH dehydrogenase subunit I [Saccharum hybrid cultivar SP-80-3280]
 gi|50812598|ref|YP_054699.1| NADH dehydrogenase subunit I [Saccharum officinarum]
 gi|118614546|ref|YP_899461.1| NADH-plastoquinone oxidoreductase subunit I [Sorghum bicolor]
 gi|75290170|sp|Q6ENP3|NDHI_SACOF RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75291234|sp|Q6L3D6|NDHI_SACHY RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|125952749|sp|A1E9X8|NDHI_SORBI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|48478637|gb|AAT44657.1| NADH dehydrogenase subunit I [Saccharum hybrid cultivar SP80-3280]
 gi|49659582|dbj|BAD27363.1| NADH dehydrogenase 18kD subunit [Saccharum hybrid cultivar NCo 310]
 gi|118201180|gb|ABK79550.1| NADH-plastoquinone oxidoreductase subunit I [Sorghum bicolor]
          Length = 180

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 + L +  +   TI+YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGLIITLSHTNRLPITIHYPYEKSITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         ++ + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPLVDWKFEKDIKRKQLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|297585412|ref|YP_003701192.1| NADH-quinone oxidoreductase, chain I [Bacillus selenitireducens
           MLS10]
 gi|297143869|gb|ADI00627.1| NADH-quinone oxidoreductase, chain I [Bacillus selenitireducens
           MLS10]
          Length = 285

 Score = 99.4 bits (246), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/131 (32%), Positives = 57/131 (43%), Gaps = 7/131 (5%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +  F + L YF K   TI YP EK     RFRG H         E+CI C LC   CP 
Sbjct: 4   LLKGFGVTLNYFRKKNLTIQYPEEKMVMPERFRGIHRFF-----PEKCIVCNLCVQACPT 58

Query: 76  QAITIESGPRCHDGTRRTV-RYDIDMIKCIYCGLCQEACPVDAIVEGPNFE-FATETRQE 133
             IT+       +  ++ +  Y+ID   CI C  C E CP  AIV    ++  +   R +
Sbjct: 59  DVITLTGKKSEENPKKKVIDTYNIDFQGCILCDFCTEVCPTQAIVMTARYDNLSEYNRAD 118

Query: 134 LYYDKERLLNN 144
            + D   L  N
Sbjct: 119 HFKDINWLTAN 129


>gi|168188270|gb|ACA14524.1| NADH dehydrogenase subunit I [Duidaea pinifolia]
 gi|168188290|gb|ACA14534.1| NADH dehydrogenase subunit I [Gongylolepis benthamiana]
          Length = 166

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  NLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|290489772|gb|ADD31293.1| NADH-plastoquinone oxidoreductase subunit I protein [Bulnesia
           arborea]
          Length = 164

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R   Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKFENDIRKKRLFNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|290489756|gb|ADD31285.1| NADH-plastoquinone oxidoreductase subunit I protein [Ehretia
           acuminata]
          Length = 167

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK   S RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLIASERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         ++ + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKQLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|168188286|gb|ACA14532.1| NADH dehydrogenase subunit I [Gochnatia hypoleuca]
          Length = 166

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLEIDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|28202228|ref|NP_777468.1| NADH dehydrogenase subunit I [Anthoceros formosae]
 gi|47117204|sp|Q85A84|NDHI_ANTFO RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|27807930|dbj|BAC55405.1| NADH dehydrogenase 18 kDa subunit [Anthoceros formosae]
 gi|27808104|dbj|BAC55505.1| NADH dehydrogenase 18 kDa subunit [Anthoceros formosae]
          Length = 183

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK   S RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFIVTLDHMNRLPMTIQYPYEKLVPSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++   +     ++   Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  NLPVVDWKFKKDIKKKQLKSYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|290489794|gb|ADD31304.1| NADH-plastoquinone oxidoreductase subunit I protein [Trochodendron
           aralioides]
          Length = 180

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|168188342|gb|ACA14559.1| NADH dehydrogenase subunit I [Perezia purpurata]
          Length = 166

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|168188325|gb|ACA14551.1| NADH dehydrogenase subunit I [Mutisia retrorsa]
          Length = 166

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++     +   +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|110287696|sp|Q2QD37|NDHI_CUCSA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|74027152|gb|AAZ94702.1| NADH dehydrogenase 18 kDa subunit [Cucumis sativus]
 gi|115432854|gb|ABI97467.1| NADH-plastoquinone oxidoreductase subunit I [Cucumis sativus]
 gi|115498356|gb|ABI98798.1| NADH-plastoquinone oxidoreductase subunit I [Cucumis sativus]
          Length = 160

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK   S RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFVITLSHANRLPVTIQYPYEKLIASERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|323366668|gb|ADX43803.1| NADH dehydrogenase subunit I [Ageratina luciae-brauniae]
          Length = 166

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|75300805|sp|Q8HVJ7|NDHI_VENCA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300831|sp|Q8HVM3|NDHI_PSEAR RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300835|sp|Q8HVM7|NDHI_PHIZI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300846|sp|Q8HVN8|NDHI_OTESC RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300858|sp|Q8HVQ0|NDHI_LOXSI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300861|sp|Q8HVQ3|NDHI_MONCO RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300862|sp|Q8HVQ4|NDHI_LAYHE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300866|sp|Q8HVQ8|NDHI_JAUCA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300867|sp|Q8HVQ9|NDHI_JAEHI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300872|sp|Q8HVR4|NDHI_HYMFF RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300885|sp|Q8HVS7|NDHI_ERICN RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300887|sp|Q8HVS9|NDHI_ERIST RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300889|sp|Q8HVT1|NDHI_ENGPE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|75300920|sp|Q8HVW2|NDHI_ACMRA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|24460503|gb|AAN61692.1| NADH dehydrogenase subunit I [Acmella radicans]
 gi|24460505|gb|AAN61693.1| NADH dehydrogenase subunit I [Alepidocline annua]
 gi|24460566|gb|AAN61723.1| NADH dehydrogenase subunit I [Engelmannia peristenia]
 gi|24460570|gb|AAN61725.1| NADH dehydrogenase subunit I [Eriophyllum staechadifolium]
 gi|24460574|gb|AAN61727.1| NADH dehydrogenase subunit I [Eriophyllum congdonii]
 gi|24460600|gb|AAN61740.1| NADH dehydrogenase subunit I [Hymenopappus filifolius var.
           filifolius]
 gi|24460610|gb|AAN61745.1| NADH dehydrogenase subunit I [Jaegeria hirta]
 gi|24460612|gb|AAN61746.1| NADH dehydrogenase subunit I [Jaumea carnosa]
 gi|24460620|gb|AAN61750.1| NADH dehydrogenase subunit I [Layia heterotricha]
 gi|24460622|gb|AAN61751.1| NADH dehydrogenase subunit I [Monolopia congdonii]
 gi|24460628|gb|AAN61754.1| NADH dehydrogenase subunit I [Loxothysanus sinuatus]
 gi|24460652|gb|AAN61766.1| NADH dehydrogenase subunit I [Oteiza scandens]
 gi|24460674|gb|AAN61777.1| NADH dehydrogenase subunit I [Philactis zinnioides]
 gi|24460682|gb|AAN61781.1| NADH dehydrogenase subunit I [Pseudoclappia arenaria]
 gi|24460734|gb|AAN61807.1| NADH dehydrogenase subunit I [Venegasia carpesioides]
          Length = 166

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|122894039|ref|YP_001004235.1| NADH-plastoquinone oxidoreductase subunit I [Ranunculus macranthus]
 gi|156632627|sp|A1XGT7|NDHI_RANMC RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|85540853|gb|ABC70805.1| NADH-plastoquinone oxidoreductase subunit I [Ranunculus macranthus]
          Length = 180

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +  + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSLMITLSHANRLPVTIQYPYEKVITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++     +   +R + Y ID   CI+CG C E CP + +     +E +   R EL 
Sbjct: 77  DLPVVDWKLETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSAYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|121720668|ref|YP_001001588.1| NADH-plastoquinone oxidoreductase subunit I [Nuphar advena]
 gi|156632618|sp|A1XG09|NDHI_NUPAD RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|84682259|gb|ABC60513.1| NADH-plastoquinone oxidoreductase subunit I [Nuphar advena]
          Length = 179

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFMITLSHANRLPVTIQYPYEKSITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWRLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|168188251|gb|ACA14515.1| NADH dehydrogenase subunit I [Chuquiraga spinosa]
          Length = 166

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPIVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|189162325|ref|YP_001936571.1| NADH dehydrogenase subunit I [Fagopyrum esculentum subsp.
           ancestrale]
 gi|166065411|gb|ABY79786.1| NADH dehydrogenase subunit I [Fagopyrum esculentum subsp.
           ancestrale]
          Length = 170

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFLITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +   R EL 
Sbjct: 77  DLPVVDWKLETGIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSMYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|168188340|gb|ACA14558.1| NADH dehydrogenase subunit I [Pasaccardoa grantii]
          Length = 166

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYEISTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|168188335|gb|ACA14556.1| NADH dehydrogenase subunit I [Onoseris hastata]
          Length = 166

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKFETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|68164858|ref|YP_247654.1| NADH dehydrogenase subunit I [Cucumis sativus]
 gi|67511453|emb|CAJ00813.1| NADH dehydrogenase subunit I [Cucumis sativus]
          Length = 160

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 55/122 (45%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK   S RFRG            +CIAC+ C  +CP 
Sbjct: 22  IGQGFVITLSHANRLPVTIQYPYEKLIASERFRGRIHFEFD-----KCIACEACVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|168188356|gb|ACA14566.1| NADH dehydrogenase subunit I [Richterago amplexifolia]
          Length = 166

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|260677471|ref|YP_003208253.1| NADH-plastoquinone oxidoreductase subunit I [Coix lacryma-jobi]
 gi|209361409|gb|ACI43324.1| NADH-plastoquinone oxidoreductase subunit I [Coix lacryma-jobi]
          Length = 180

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 + L +  +   TI+YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGLIITLSHTNRLPITIHYPYEKSITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         ++ + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPLVDWRFEKDIKRKQLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|290489792|gb|ADD31303.1| NADH-plastoquinone oxidoreductase subunit I protein [Staphylea
           colchica]
          Length = 179

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++     +   +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYNRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|75300827|sp|Q8HVL9|NDHI_RIEOB RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|24460690|gb|AAN61785.1| NADH dehydrogenase subunit I [Riencourtia oblongifolia]
          Length = 166

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|75300842|sp|Q8HVN4|NDHI_PARHY RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|24460660|gb|AAN61770.1| NADH dehydrogenase subunit I [Parthenium hysterophorus]
          Length = 166

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|75300839|sp|Q8HVN1|NDHI_PEROV RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|24460666|gb|AAN61773.1| NADH dehydrogenase subunit I [Perymeniopsis ovalifolia]
          Length = 166

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGHCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|75300815|sp|Q8HVK7|NDHI_STERE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|24460714|gb|AAN61797.1| NADH dehydrogenase subunit I [Stevia rebaudiana]
          Length = 166

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFIITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|75300826|sp|Q8HVL8|NDHI_RENSL RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|24460692|gb|AAN61786.1| NADH dehydrogenase subunit I [Rensonia salvadorica]
          Length = 166

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|75300843|sp|Q8HVN5|NDHI_PALAR RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|24460658|gb|AAN61769.1| NADH dehydrogenase subunit I [Palafoxia arida]
          Length = 166

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFIITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|183217791|ref|YP_001837411.1| NADH dehydrogenase subunit I [Guizotia abyssinica]
 gi|179366306|gb|ACB86577.1| NADH-plastoquinone oxidoreductase subunit I [Guizotia abyssinica]
          Length = 166

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTFDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|134299887|ref|YP_001113383.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfotomaculum reducens MI-1]
 gi|134052587|gb|ABO50558.1| NADH dehydrogenase subunit I [Desulfotomaculum reducens MI-1]
          Length = 165

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/120 (33%), Positives = 56/120 (46%), Gaps = 7/120 (5%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
           K  +    + +++FFK K T+ YP  +     RF G            +CIAC  C   C
Sbjct: 4   KGLIKGLGVTIKHFFKPKVTVQYPEVRLPIPERFFGRPQFFYD-----KCIACNQCVNAC 58

Query: 74  PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
           P   I +E+     D  +   RYD D   C++CG+CQEACP DAI    +FE     R +
Sbjct: 59  PNNVIKLETD--TVDKKKVVTRYDFDQQYCMFCGMCQEACPKDAIKFSDDFELTQYNRPD 116


>gi|34500968|ref|NP_904153.1| NADH dehydrogenase subunit I [Amborella trichopoda]
 gi|75294671|sp|Q70XW0|NDHI_AMBTC RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|34481683|emb|CAD45160.1| NADH dehydrogenase 18kD subunit [Amborella trichopoda]
          Length = 180

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFMITLSHANRLPVTIQYPYEKSITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWRFETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|91214191|ref|YP_538814.1| NADH dehydrogenase subunit I [Glycine max]
 gi|110287707|sp|Q2PMN6|NDHI_SOYBN RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|83595792|gb|ABC25173.1| NADH-plastoquinone oxidoreductase subunit I [Glycine max]
          Length = 163

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  +S RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFTITLSHANRLPVTIQYPYEKIISSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         ++ + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKQLLNYSIDFGICIFCGNCIEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|50346839|ref|YP_053210.1| NADH dehydrogenase subunit I [Nymphaea alba]
 gi|75290268|sp|Q6EVZ6|NDHI_NYMAL RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|50250384|emb|CAF28650.1| NADH dehydrogenase 18kD subunit [Nymphaea alba]
          Length = 179

 Score = 99.0 bits (245), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFMITLSHANRLPVTIQYPYEKSITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWRLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|325280127|ref|YP_004252669.1| putative NADH dehydrogenase I subunit I [Odoribacter splanchnicus
           DSM 20712]
 gi|324311936|gb|ADY32489.1| putative NADH dehydrogenase I subunit I [Odoribacter splanchnicus
           DSM 20712]
          Length = 158

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 53/158 (33%), Positives = 71/158 (44%), Gaps = 10/158 (6%)

Query: 1   MRIFRCNVSFLF--LKEFVGAFFLCLRYFFKAKTTINYPFEK--GSTSPRFRGEHALRRY 56
           MR  +   S  F  L   +    + LR FF  KTT  YP  +       RFRGE  +   
Sbjct: 1   MRSTQEYFSSFFNGLGSLLKGMSITLREFFTPKTTEKYPENRATLKMFDRFRGELTMPHN 60

Query: 57  PNGEERCIACKLCEAICPAQAITIESGP---RCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
              E  C+AC +CE  CP   I +ES           +  VRY  D   C+YC LC  +C
Sbjct: 61  ERNEHHCVACGICEMNCPNDTIRVESEMVTTEDGKKKKVLVRYLYDHGSCLYCQLCVRSC 120

Query: 114 PVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
           P  AI   P +E A  TR++L     +L + G R E++
Sbjct: 121 PHQAITFIPTYEHAVFTREKLVL---QLNHEGSRLETK 155


>gi|108773204|ref|YP_635802.1| NADH dehydrogenase subunit I [Chara vulgaris]
 gi|115502270|sp|Q1ACE5|NDHI_CHAVU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|77157860|gb|ABA61901.1| 18 kDa subunit of NADH-plastoquinone oxidoreductase [Chara
           vulgaris]
          Length = 159

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  ++  T+ YP+EK  TS RFRG            +CI C++C  +CP 
Sbjct: 22  IGQGFIVTLNHINRSAITVQYPYEKLITSERFRGRIHFEFD-----KCIVCEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++   +     ++   Y ID   CI+CG C E CP + +     +E +   R EL 
Sbjct: 77  NLPVVDWNFQQDIRKKKLKNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSVYDRHELN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|290489762|gb|ADD31288.1| NADH-plastoquinone oxidoreductase subunit I protein [Meliosma aff.
           cuneifolia Moore 333]
          Length = 180

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFMITLSHTNRLPITIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWRLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|75300821|sp|Q8HVL3|NDHI_SILPE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|24460702|gb|AAN61791.1| NADH dehydrogenase subunit I [Silphium perfoliatum]
          Length = 166

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|75755713|ref|YP_319817.1| NADH dehydrogenase subunit I [Acorus calamus]
 gi|161622363|ref|YP_001586235.1| NADH dehydrogenase subunit I [Acorus americanus]
 gi|110287694|sp|Q3V4Y0|NDHI_ACOCL RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|74381763|emb|CAI53848.1| NADH dehydrogenase 18kD subunit [Acorus calamus]
 gi|156573621|gb|ABU85146.1| NADH-plastoquinone oxidoreductase subunit I [Acorus americanus]
 gi|160369906|gb|ABX38797.1| NADH-plastoquinone oxidoreductase subunit I [Acorus americanus]
          Length = 179

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         ++ + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWRLDTDVRKKQLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|297201679|ref|ZP_06919076.1| NADH-plastoquinone oxidoreductase, I subunit [Streptomyces sviceus
           ATCC 29083]
 gi|197710948|gb|EDY54982.1| NADH-plastoquinone oxidoreductase, I subunit [Streptomyces sviceus
           ATCC 29083]
          Length = 189

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 42/139 (30%), Positives = 56/139 (40%), Gaps = 14/139 (10%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
                   + LR   K   T  YP  +    PR RG   L      EE C  C LC   C
Sbjct: 7   SGLAKGLAVTLRTMTKKTVTEQYPDAQPDLPPRTRGVIGLF-----EENCTVCMLCAREC 61

Query: 74  PAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           P   I I+S                     R+ ID   C+YCG+C E CP DA+   P F
Sbjct: 62  PDWCIYIDSHKETVPAAAPGGRERSRNVLDRFAIDFSLCMYCGICIEVCPFDALFWSPEF 121

Query: 125 EFATETRQELYYDKERLLN 143
           E+A    +EL +++++L  
Sbjct: 122 EYAETDIRELTHERDKLRE 140


>gi|296274184|ref|YP_003656815.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Arcobacter nitrofigilis DSM 7299]
 gi|296098358|gb|ADG94308.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Arcobacter
           nitrofigilis DSM 7299]
          Length = 170

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 55/160 (34%), Positives = 84/160 (52%), Gaps = 17/160 (10%)

Query: 11  LFLKEFVGAFFLCLRYFFKAK------TTINYPFEKGS---TSPRFRGEHALRRYPNGEE 61
           LF+   +G     L +F K        TTI YP E+ +   T+PR+RG H L ++ +  E
Sbjct: 17  LFIPAIMGGMKTTLGHFTKNLKDVSNLTTIQYPEEQPTDVATNPRYRGVHRLTKWEDESE 76

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDG-TRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           +C+AC +C   CPA+ I I++  R      +R   + ID+++C+YCG C EACP DAI  
Sbjct: 77  KCVACYMCATACPAECIFIDAEERFDGKAEKRPKEFKIDLLECVYCGYCVEACPCDAIRM 136

Query: 121 -GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
                 F   +R+E   DK+ L+NN      E  +++  D
Sbjct: 137 DTGILSFTGSSREEFVVDKKYLMNN------ERAKDLSND 170


>gi|168188260|gb|ACA14519.1| NADH dehydrogenase subunit I [Dicoma sp. JLP-2008]
          Length = 166

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYEISTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|156598600|gb|ABU85557.1| NADH-plastoquinone oxidoreductase subunit I [Scaevola aemula]
          Length = 160

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHVNRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         ++ + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  NLPVVDWKLETEIRKKQLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|322369190|ref|ZP_08043755.1| NADH-quinone oxidoreductase, chain I [Haladaptatus paucihalophilus
           DX253]
 gi|320550922|gb|EFW92571.1| NADH-quinone oxidoreductase, chain I [Haladaptatus paucihalophilus
           DX253]
          Length = 153

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 46/130 (35%), Positives = 69/130 (53%), Gaps = 11/130 (8%)

Query: 13  LKEFVGAFFLCLRY-FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71
           +   + +    +++       T+ YP      SPRFRG H        +ERCI C+ CE 
Sbjct: 1   MIGLLKSMATTMKHALGGTTFTVEYPDVAPEVSPRFRGIHKF-----SQERCIWCRQCEN 55

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           +CP   I I    +     R   +Y++ + +CIYC LC+E CPVDAI+   NFEF  +T+
Sbjct: 56  VCPNDTIQIVQDDQ-----RNGEQYNLHVGQCIYCRLCEEVCPVDAILLTQNFEFTGDTK 110

Query: 132 QELYYDKERL 141
            +L Y+KE+L
Sbjct: 111 DDLVYNKEQL 120


>gi|159901495|ref|YP_001547742.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Herpetosiphon aurantiacus ATCC 23779]
 gi|159894534|gb|ABX07614.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 330

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 40/150 (26%), Positives = 55/150 (36%), Gaps = 17/150 (11%)

Query: 18  GAFFLCLRYF----FKAK----------TTINYPFEKGSTSPRFRGEHALRRYP-NGEER 62
               +  R F    F               + YP E+      +R    L      G E 
Sbjct: 29  KGLGIVFRKFRKALFGKPNSDRADTEGQFNVQYPEERLVLPEAYRNMPILLYDDATGHEL 88

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTV--RYDIDMIKCIYCGLCQEACPVDAIVE 120
           C +C  CE ICP Q I I        G        + ++   C+ CG C E CP DAI  
Sbjct: 89  CTSCFQCERICPPQVIHITQAKDPATGKPVPAAANFVLEYDTCMSCGYCAEVCPFDAIKM 148

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWES 150
             +FE +T    EL  + +RLL     +E+
Sbjct: 149 DHDFELSTGNHPELDVNYDRLLRPISYYEA 178


>gi|114107100|ref|YP_740256.1| NADH-plastoquinone oxidoreductase subunit I [Liriodendron
           tulipifera]
 gi|122233809|sp|Q0G9G5|NDHI_LIRTU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|113201048|gb|ABI32563.1| NADH-plastoquinone oxidoreductase subunit I [Liriodendron
           tulipifera]
          Length = 180

 Score = 98.6 bits (244), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFMITLSHANRLPVTIQYPYEKSITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWRLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|297159543|gb|ADI09255.1| NADH dehydrogenase subunit NuoI2 [Streptomyces bingchenggensis
           BCW-1]
          Length = 204

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 57/139 (41%), Gaps = 14/139 (10%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
                   + LR   +   T  YP  +    PR RG   L      EE C  C LC   C
Sbjct: 6   SGLAKGLAVTLRTMTRKAHTAQYPDVQPELPPRTRGVIGLF-----EENCTVCMLCAREC 60

Query: 74  PAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           P   I I+S                     R+ ID   C+YCG+C E CP DA+   P F
Sbjct: 61  PDWCIYIDSHKETVPPAAPGGRERSRNVLDRFAIDFALCMYCGICIEVCPFDALFWSPEF 120

Query: 125 EFATETRQELYYDKERLLN 143
           E+A E  ++L +++++L  
Sbjct: 121 EYAEEDIRDLTHERDKLRE 139


>gi|282860766|ref|ZP_06269832.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Streptomyces
           sp. ACTE]
 gi|282564502|gb|EFB70038.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Streptomyces
           sp. ACTE]
          Length = 218

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 42/139 (30%), Positives = 55/139 (39%), Gaps = 14/139 (10%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
                   + LR   K   T  YP  +    PR RG   L      EE C  C LC   C
Sbjct: 7   SGLAKGLAVTLRTMTKRTVTAQYPDVQPELPPRTRGVIGLF-----EENCTVCMLCAREC 61

Query: 74  PAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           P   I I+S                     R+ ID   C+YCG+C E CP DA+   P F
Sbjct: 62  PDWCIYIDSHKETVPPAAPGGRERSRNVLDRFAIDFALCMYCGICIEVCPFDALFWSPEF 121

Query: 125 EFATETRQELYYDKERLLN 143
           E+A     EL +++++L  
Sbjct: 122 EYAETDIHELTHERDKLRE 140


>gi|182436714|ref|YP_001824433.1| putative NADH dehydrogenase chain I [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178465230|dbj|BAG19750.1| putative NADH dehydrogenase chain I [Streptomyces griseus subsp.
           griseus NBRC 13350]
          Length = 195

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 45/166 (27%), Positives = 60/166 (36%), Gaps = 26/166 (15%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
                   + LR   +   T  YP  +    PR RG   L      EE C  C LC   C
Sbjct: 7   SGLAKGLAVTLRTMTRKTVTAQYPDAQPELPPRSRGVIGLF-----EENCTVCMLCAREC 61

Query: 74  PAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           P   I I+S                     R+ ID   C+YCG+C E CP DA+   P F
Sbjct: 62  PDWCIYIDSHKETSPPAAPGGRERSRNVLDRFAIDFSLCMYCGICIEVCPFDALFWSPEF 121

Query: 125 EFATETRQELYYDKERL------------LNNGDRWESEIVRNIVT 158
           E+A     EL +++++L            L+ G     EI      
Sbjct: 122 EYAETDIHELTHERDKLREWMWTVPEPPALDPGAEEPKEIAAARKA 167


>gi|75300909|sp|Q8HVV1|NDHI_CALME RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|24460525|gb|AAN61703.1| NADH dehydrogenase subunit I [Calea megacephala]
          Length = 166

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFIITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|290489776|gb|ADD31295.1| NADH-plastoquinone oxidoreductase subunit I protein [Euonymus
           americanus]
          Length = 175

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++     +   +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWQFETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|290489774|gb|ADD31294.1| NADH-plastoquinone oxidoreductase subunit I protein [Cornus
           florida]
          Length = 167

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|168188207|gb|ACA14493.1| NADH dehydrogenase subunit I [Acicarpha spathulata]
          Length = 166

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPIVDWKLETEIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|156597947|gb|ABU85241.1| NADH-plastoquinone oxidoreductase subunit I [Cycas micronesica]
          Length = 185

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 55/122 (45%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP++K   S RFRG            +CIA ++C  +CP 
Sbjct: 22  IGQGFMVTLYHMNRLPMTIQYPYDKLIPSERFRGRIHFEFD-----KCIAREVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++       G +R   + ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWNFGRDIGKKRLENHSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|323148879|ref|YP_004221971.1| NADH-plastoquinone oxidoreductase subunit I [Erodium carvifolium]
 gi|316926343|gb|ADU58196.1| NADH-plastoquinone oxidoreductase subunit I [Erodium carvifolium]
          Length = 171

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +  + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSLMITLSHANRFPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++   + +   +R   Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKFQTNIRKKRLFNYSIDFGICIFCGNCVEYCPTNCLAMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|269128578|ref|YP_003301948.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermomonospora curvata DSM 43183]
 gi|268313536|gb|ACY99910.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermomonospora curvata DSM 43183]
          Length = 178

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 44/136 (32%), Positives = 56/136 (41%), Gaps = 13/136 (9%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 + LR   +   T  YP  +    PR RG  AL      EE C  C LC   CP 
Sbjct: 9   LAKGLAVTLRTMTRRSVTRQYPQVRPDLPPRSRGVIALL-----EENCTVCMLCARECPD 63

Query: 76  QAITIESGPRC--------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
             I I+S                    R+ ID   C+YCG+C E CP DA+   P FE+A
Sbjct: 64  WCIYIDSHKETLPAEGGGRPRTRNVLDRFAIDFALCMYCGICVEVCPFDALFWSPQFEYA 123

Query: 128 TETRQELYYDKERLLN 143
                EL ++K+RL  
Sbjct: 124 EYDIAELTHEKDRLRE 139


>gi|24460728|gb|AAN61804.1| NADH dehydrogenase subunit I [Tridax balbisioides]
          Length = 166

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLAHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|325610487|gb|ADZ36438.1| NADH dehydrogenase 18 kDa subunit [Polyspora chrysandra]
          Length = 167

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFIITLSHANRLPVTIQYPYEKWITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|300711696|ref|YP_003737510.1| NADH-quinone oxidoreductase, chain I [Halalkalicoccus jeotgali B3]
 gi|299125379|gb|ADJ15718.1| NADH-quinone oxidoreductase, chain I [Halalkalicoccus jeotgali B3]
          Length = 153

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 46/130 (35%), Positives = 68/130 (52%), Gaps = 11/130 (8%)

Query: 13  LKEFVGAFFLCLRYFF-KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71
           +     +    +++       T+ YP      SPRFRG H        +ERCI C+ CE 
Sbjct: 1   MIGLFKSMATTMKHALDGNTFTVEYPETAPEVSPRFRGVHKF-----SQERCIWCRQCEN 55

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           +CP   I I    +     R   +Y++ + +CIYC LC+E CPVDAI+   NFEF  +T+
Sbjct: 56  VCPNDTIQIVQDEQ-----RNGEQYNLHIGQCIYCRLCEEVCPVDAILLTQNFEFTGDTK 110

Query: 132 QELYYDKERL 141
            +L Y+KE+L
Sbjct: 111 DDLVYNKEQL 120


>gi|110227132|ref|YP_665610.1| NADH dehydrogenase subunit I [Populus alba]
 gi|115502272|sp|Q14FA4|NDHI_POPAL RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|109945570|dbj|BAE97258.1| NADH dehydrogenase subunit I [Populus alba]
          Length = 176

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F   L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFMTTLSHVNRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++     +   +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWELETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYNRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|167630269|ref|YP_001680768.1| proton-translocating NADH-ubiquinone oxidoreductase, 23 kd, chain i
           [Heliobacterium modesticaldum Ice1]
 gi|167593009|gb|ABZ84757.1| proton-translocating NADH-ubiquinone oxidoreductase, 23 kd, chain i
           [Heliobacterium modesticaldum Ice1]
          Length = 147

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 40/128 (31%), Positives = 60/128 (46%), Gaps = 5/128 (3%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
           K  +   ++ L+ FF+ K T  YP        RFRG            +CIAC +C+  C
Sbjct: 4   KGLLTGMWVTLKEFFRKKVTEEYPDVMPDLGDRFRGG----TLKLQTSKCIACGICQNAC 59

Query: 74  PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
           P  +I + S  R  +  R+   Y  D   C++C LC +ACPV  I     F F+  +R++
Sbjct: 60  PNGSIKLTSV-RDENNKRKLSTYVHDAGLCLFCNLCIDACPVKCIDWTGEFAFSGYSRED 118

Query: 134 LYYDKERL 141
           L +D   L
Sbjct: 119 LVFDCIEL 126


>gi|134093260|ref|YP_001109561.1| NADH dehydrogenase subunit I [Populus trichocarpa]
 gi|224102347|ref|XP_002334188.1| predicted protein [Populus trichocarpa]
 gi|224102355|ref|XP_002334190.1| predicted protein [Populus trichocarpa]
 gi|156632621|sp|A4GYX0|NDHI_POPTR RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|133712122|gb|ABO36765.1| NADH-plastoquinone oxidoreductase SU I [Populus trichocarpa]
 gi|222870343|gb|EEF07474.1| predicted protein [Populus trichocarpa]
 gi|222870345|gb|EEF07476.1| predicted protein [Populus trichocarpa]
          Length = 176

 Score = 98.6 bits (244), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F   L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFMTTLSHVNRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++     +   +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWELETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYNRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|229577808|ref|YP_002836144.1| NADH-plastoquinone oxidoreductase subunit I [Megaleranthis
           saniculifolia]
 gi|226933936|gb|ACO92069.1| NADH-plastoquinone oxidoreductase subunit I [Megaleranthis
           saniculifolia]
          Length = 180

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFMITLSHTNRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|68565792|sp|Q85FH1|NDHI_ADICA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|48476043|gb|AAP29445.2| NADH dehydrogenase subunit I [Adiantum capillus-veneris]
          Length = 167

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 5/126 (3%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   T+ YP+EK   S RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFAVTLDHLNRLPITVQYPYEKKLPSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         ++   Y ID   CI+CG C E CP + +     +E ++  R EL 
Sbjct: 77  NLPVVDWIFLKDVKKKKLKNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSSYNRHELN 136

Query: 136 YDKERL 141
           +D+  L
Sbjct: 137 FDQTAL 142


>gi|149390497|ref|YP_001294325.1| NADH-plastoquinone oxidoreductase subunit I [Illicium oligandrum]
 gi|156632614|sp|A6MMZ9|NDHI_ILLOL RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|147917450|gb|ABQ52574.1| NADH-plastoquinone oxidoreductase subunit I [Illicium oligandrum]
          Length = 180

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFMITLSHTNRLPVTIQYPYEKSITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWRLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|319955925|ref|YP_004167188.1| NADH dehydrogenase subunit i [Nitratifractor salsuginis DSM 16511]
 gi|319418329|gb|ADV45439.1| NADH dehydrogenase subunit I [Nitratifractor salsuginis DSM 16511]
          Length = 207

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 52/169 (30%), Positives = 72/169 (42%), Gaps = 12/169 (7%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFK-----AKTTINYPFEKGSTSPRFRGEHAL-RRYP 57
           F+  V      E      +  R   K        TI YPFEK   +PR+R  H + R   
Sbjct: 32  FKRVVRRSVQLELFTGLKVTFREMIKALFMGEMHTIKYPFEKLPIAPRYRAIHEMKRLLE 91

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           +G  RCI C LCE IC A  I I++     +  +    Y ++  +CI+CG C E CP  A
Sbjct: 92  SGHYRCIGCGLCEKICIANCIRIDTR-YDENQRKEVSEYTLNFGRCIFCGYCAEVCPELA 150

Query: 118 IVEGPNFEFATETRQELYYDKERL-----LNNGDRWESEIVRNIVTDSP 161
           IV G  +E A+E R E    ++ L     L N   +      +   D  
Sbjct: 151 IVHGGRYEVASEQRAEYALFEDMLTPLDQLANQKEYPGFGAVSPDADEK 199


>gi|115605072|ref|YP_784524.1| NADH-plastoquinone oxidoreductase subunit I [Piper cenocladum]
 gi|122164317|sp|Q06GK9|NDHI_PIPCE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|112253801|gb|ABI14522.1| NADH-plastoquinone oxidoreductase subunit I [Piper cenocladum]
          Length = 180

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFAITLSHTNRLPVTIQYPYEKSITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|86605454|ref|YP_474217.1| NADH dehydrogenase subunit I [Synechococcus sp. JA-3-3Ab]
 gi|110287709|sp|Q2JWB4|NDHI_SYNJA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|86553996|gb|ABC98954.1| NADH-ubiquinone/plastoquinone oxidoreductase, I subunit
           [Synechococcus sp. JA-3-3Ab]
          Length = 210

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 +   +  +   T+ YPFEK   S RFRG            +CIAC++C  +CP 
Sbjct: 21  IGQGMGVVFDHMNRRPVTVQYPFEKLIPSERFRGRIHFEFD-----KCIACEICVRVCPI 75

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +    Y ID   CI+C  C E CP + +    ++E AT  R EL 
Sbjct: 76  DLPVVDWVYNTELKKKELYSYSIDFGVCIFCANCVEFCPTNCLSVTEDYELATYDRHELN 135

Query: 136 YD 137
           Y 
Sbjct: 136 YH 137


>gi|254416203|ref|ZP_05029957.1| NADH-plastoquinone oxidoreductase, I subunit [Microcoleus
           chthonoplastes PCC 7420]
 gi|196176885|gb|EDX71895.1| NADH-plastoquinone oxidoreductase, I subunit [Microcoleus
           chthonoplastes PCC 7420]
          Length = 207

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 +   +  +   T+ YP+EK   S R+RG            +CI+C++C  +CP 
Sbjct: 22  IGQGLSVTFDHMQRRPVTVQYPYEKLIPSERYRGRIHFEFD-----KCISCEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +    Y ID   CI+C  C E CP + +     +E +T  R EL 
Sbjct: 77  NLPVVDYEFDKASKKKNLKHYSIDFGVCIFCANCIEYCPTNCLSATEEYEMSTYDRHELN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|139387498|ref|YP_001122851.1| NADH-plastoquinone oxidoreductase subunit I [Phaseolus vulgaris]
 gi|289066875|ref|YP_003434393.1| NADH-plastoquinone oxidoreductase subunit I [Vigna radiata]
 gi|156632620|sp|A4GGF0|NDHI_PHAVU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|112031020|gb|ABH88132.1| NADH-plastoquinone oxidoreductase subunit I [Phaseolus vulgaris]
 gi|158187181|gb|ABW22814.1| NADH-plastoquinone oxidoreductase subunit I [Phaseolus vulgaris]
 gi|259020062|gb|ACV90260.1| NADH-plastoquinone oxidoreductase subunit I [Vigna radiata]
          Length = 161

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 + L +  +   TI YP+EK  +S RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGLMITLSHANRLPVTIQYPYEKIISSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPIVDWKLETDIRKKRLLNYSIDFGICIFCGNCIEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|168188280|gb|ACA14529.1| NADH dehydrogenase subunit I [Gerbera piloselloides]
 gi|168188282|gb|ACA14530.1| NADH dehydrogenase subunit I [Gerbera serrata]
          Length = 166

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGEGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|290489782|gb|ADD31298.1| NADH-plastoquinone oxidoreductase subunit I protein [Heuchera
           sanguinea]
          Length = 167

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|290489780|gb|ADD31297.1| NADH-plastoquinone oxidoreductase subunit I protein [Gunnera
           manicata]
          Length = 167

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++     +   ++ + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETNIRKKQLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|290489790|gb|ADD31302.1| NADH-plastoquinone oxidoreductase subunit I protein [Quercus nigra]
          Length = 165

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPM 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++     +   +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWELETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|150251538|ref|YP_001312270.1| NADH dehydrogenase subunit I [Cycas taitungensis]
 gi|149941588|dbj|BAF65012.1| NADH dehydrogenase subunit I [Cycas taitungensis]
          Length = 185

 Score = 98.2 bits (243), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 55/122 (45%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP++K   S RFRG            +CIA ++C  +CP 
Sbjct: 22  IGQGFMVTLYHMNRLPMTIQYPYDKLIPSERFRGRIHFEFD-----KCIAREVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++       G +R   + ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWNFGRDIGKKRLENHSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|306486046|gb|ADM92670.1| NADH-plastoquinone oxidoreductase subunit I [Davidia involucrata]
          Length = 163

 Score = 98.2 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|326777314|ref|ZP_08236579.1| NADH dehydrogenase (quinone) [Streptomyces cf. griseus XylebKG-1]
 gi|326657647|gb|EGE42493.1| NADH dehydrogenase (quinone) [Streptomyces cf. griseus XylebKG-1]
          Length = 198

 Score = 98.2 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 55/139 (39%), Gaps = 14/139 (10%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
                   + LR   +   T  YP  +    PR RG   L      EE C  C LC   C
Sbjct: 7   SGLAKGLAVTLRTMTRKTVTAQYPDAQPELPPRSRGVIGLF-----EENCTVCMLCAREC 61

Query: 74  PAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           P   I I+S                     R+ ID   C+YCG+C E CP DA+   P F
Sbjct: 62  PDWCIYIDSHKETSPPAAPGGRERSRNVLDRFAIDFSLCMYCGICIEVCPFDALFWSPEF 121

Query: 125 EFATETRQELYYDKERLLN 143
           E+A     EL +++++L  
Sbjct: 122 EYAETDIHELTHERDKLRE 140


>gi|91984047|ref|YP_567132.1| NADH dehydrogenase subunit I [Vitis vinifera]
 gi|225466295|ref|XP_002274492.1| PREDICTED: similar to NADH dehydrogenase subunit I [Vitis vinifera]
 gi|225466352|ref|XP_002274882.1| PREDICTED: similar to NADH dehydrogenase subunit I [Vitis vinifera]
 gi|225466424|ref|XP_002262806.1| PREDICTED: similar to NADH dehydrogenase subunit I [Vitis vinifera]
 gi|225466426|ref|XP_002262894.1| PREDICTED: similar to NADH dehydrogenase subunit I [Vitis vinifera]
 gi|115502274|sp|Q0ZIW4|NDHI_VITVI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|91701705|gb|ABE47589.1| NADH-plastoquinone oxidoreductase subunit I [Vitis vinifera]
          Length = 167

 Score = 98.2 bits (243), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         ++ + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKQLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|313184045|ref|YP_004021202.1| NADH-plastoquinone oxidoreductase subunit I [Castanea mollissima]
 gi|309321572|gb|ADO65112.1| NADH-plastoquinone oxidoreductase subunit I [Castanea mollissima]
          Length = 165

 Score = 97.9 bits (242), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPM 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++     +   +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWELETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|56421885|ref|YP_149203.1| NADH dehydrogenase subunit I [Geobacillus kaustophilus HTA426]
 gi|56381727|dbj|BAD77635.1| NADH:ubiquinone oxidoreductase 23 kD subunit (chain I)/Formate
           hydrogenlyase subunit 6 [Geobacillus kaustophilus
           HTA426]
          Length = 135

 Score = 97.9 bits (242), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/130 (32%), Positives = 54/130 (41%), Gaps = 7/130 (5%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           +      L+   + K T +YP E      RFRG           E+CI C  C  ICP +
Sbjct: 1   MKGLAYTLKELTREKVTYDYPHEPLPLPDRFRGIQKFY-----PEKCIVCNQCVNICPTE 55

Query: 77  AITIESGPRCHD--GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134
            I +            +    Y+I+   CI C LC E CP +AIV   NFE A  +R  L
Sbjct: 56  CIQLTGKKHPDPTKKGKVIETYNINFEICILCDLCTEVCPTEAIVMTNNFELAEYSRDAL 115

Query: 135 YYDKERLLNN 144
           Y D   L  N
Sbjct: 116 YKDLAWLDEN 125


>gi|290489768|gb|ADD31291.1| NADH-plastoquinone oxidoreductase subunit I protein [Rhododendron
           simsii]
          Length = 175

 Score = 97.9 bits (242), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFMITLSHVNRFPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R   Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIQKKRLFNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|323148958|ref|YP_004222512.1| NADH-plastoquinone oxidoreductase subunit I [Smilax china]
 gi|308742649|gb|ADO33500.1| NADH-plastoquinone oxidoreductase subunit I [Smilax china]
          Length = 182

 Score = 97.9 bits (242), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFIITLSHTNRLPVTIQYPYEKSITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         ++ + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWRFEKDIKKKQLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|290489770|gb|ADD31292.1| NADH-plastoquinone oxidoreductase subunit I protein [Berberidopsis
           corallina]
          Length = 167

 Score = 97.9 bits (242), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFMVTLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|304437254|ref|ZP_07397214.1| proton-translocating NADH-quinone oxidoreductase [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
 gi|304369746|gb|EFM23411.1| proton-translocating NADH-quinone oxidoreductase [Selenomonas sp.
           oral taxon 149 str. 67H29BP]
          Length = 209

 Score = 97.9 bits (242), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 5/127 (3%)

Query: 11  LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70
           +F K  +    +  ++ +  K T+ YP EK   +  FRG +           CI C +C 
Sbjct: 1   MFGKGLLTGMSVTWKHLWGKKETVCYPEEKLPMTDNFRGGN----LAMDWRVCIGCSMCA 56

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
             CP +A+ +   P      R    Y     +C+YC LC EACPV+ +V   ++  A+ +
Sbjct: 57  NACPNKALDLTIVPDAK-KKRHMKSYIHHSGRCLYCNLCVEACPVNTLVWDKDYAIASWS 115

Query: 131 RQELYYD 137
           ++ + +D
Sbjct: 116 KETMTHD 122


>gi|222479143|ref|YP_002565380.1| NADH-quinone oxidoreductase, chain I [Halorubrum lacusprofundi ATCC
           49239]
 gi|222452045|gb|ACM56310.1| NADH-quinone oxidoreductase, chain I [Halorubrum lacusprofundi ATCC
           49239]
          Length = 153

 Score = 97.9 bits (242), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 45/130 (34%), Positives = 69/130 (53%), Gaps = 11/130 (8%)

Query: 13  LKEFVGAFFLCLRYFF-KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71
           +   + +    +++       T+ YP E    SPRFRG H        +ERCI C+ CE 
Sbjct: 1   MIGLMKSMATTMKHALDGKTFTVEYPEEAPEVSPRFRGVHKF-----SQERCIWCRQCEN 55

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           +CP   I I    +     R   +Y++ + +CIYC LC+E CPVDAI+   NFEF  +T+
Sbjct: 56  VCPNDTIQIVQDDQ-----RNGEQYNLHIGQCIYCRLCEEVCPVDAILLTQNFEFTADTK 110

Query: 132 QELYYDKERL 141
            +  ++KE+L
Sbjct: 111 DDFVFNKEQL 120


>gi|325610637|gb|ADZ36565.1| NADH dehydrogenase 18 kDa subunit [Stewartia crassifolia]
          Length = 167

 Score = 97.9 bits (242), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFIITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|76801793|ref|YP_326801.1| NADH dehydrogenase-like complex, subunit I [Natronomonas pharaonis
           DSM 2160]
 gi|76557658|emb|CAI49241.1| NADH dehydrogenase-like complex, subunit I [Natronomonas pharaonis
           DSM 2160]
          Length = 153

 Score = 97.9 bits (242), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 48/130 (36%), Positives = 71/130 (54%), Gaps = 11/130 (8%)

Query: 13  LKEFVGAFFLCLRYFF-KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71
           +   + +    +++     K T+ YP E    SPRFRG H        +ERCI C+ CE 
Sbjct: 1   MIGMLKSMATTMKHALDGEKFTVQYPEETPEVSPRFRGVHKF-----SQERCIWCRQCEN 55

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           +CP   I I +        R   +Y++ + +CIYC LC+E CPVDAI+   NFEF  +T+
Sbjct: 56  VCPNDTIQIVTDD-----MRNGEQYNLHIGQCIYCRLCEEVCPVDAILLTQNFEFTGDTK 110

Query: 132 QELYYDKERL 141
            +L Y+KE+L
Sbjct: 111 DDLAYNKEQL 120


>gi|238927264|ref|ZP_04659024.1| NADH dehydrogenase (quinone) [Selenomonas flueggei ATCC 43531]
 gi|238884851|gb|EEQ48489.1| NADH dehydrogenase (quinone) [Selenomonas flueggei ATCC 43531]
          Length = 207

 Score = 97.9 bits (242), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 5/127 (3%)

Query: 11  LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70
           +F K  +    +  ++ +  K T+ YP EK   +  FRG +           CI C +C 
Sbjct: 1   MFGKGLLTGMSVTWKHLWGKKETVCYPEEKLPMTDNFRGGN----LAMDWRVCIGCSMCA 56

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
             CP +A+ +   P      R    Y     +C+YC LC EACPV  +V   ++  AT +
Sbjct: 57  NACPNKALDLTIVPDAK-KKRHMKSYIHHSGRCLYCNLCVEACPVHTLVWDKDYAIATWS 115

Query: 131 RQELYYD 137
           ++ + +D
Sbjct: 116 KETMTHD 122


>gi|168699247|ref|ZP_02731524.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Gemmata
           obscuriglobus UQM 2246]
          Length = 184

 Score = 97.9 bits (242), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 44/148 (29%), Positives = 57/148 (38%), Gaps = 13/148 (8%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYF---FKA---KTTINYPFEKGSTSPRFRGEHALR 54
           MR +  NV +L          + LRYF   F+         YP       PR+RG H   
Sbjct: 1   MRTWIRNV-YLATTTLAAGMSVTLRYFVQSFRRGTFAAHFAYPERPVPVRPRYRGFHRF- 58

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCH-DGTRRTVRYDIDMIKCIYCGLCQEAC 113
                   CI C  C   CP   I I+               + ID  KC++C LC + C
Sbjct: 59  ----DLTTCIGCDKCARACPVDCIYIDKEKAPPPHKGFVVTGFKIDYTKCMFCALCVDPC 114

Query: 114 PVDAIVEGPNFEFATETRQELYYDKERL 141
           PVD I  G N + +T TR     D  +L
Sbjct: 115 PVDCIFMGSNHDISTYTRDGCVVDYAKL 142


>gi|320009163|gb|ADW04013.1| putative NADH dehydrogenase chain I [Streptomyces flavogriseus ATCC
           33331]
          Length = 206

 Score = 97.9 bits (242), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 42/139 (30%), Positives = 55/139 (39%), Gaps = 14/139 (10%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
                   + LR   K   T  YP  +    PR RG   L      EE C  C LC   C
Sbjct: 7   SGLAKGLAVTLRTMTKRTVTAQYPDVQPELPPRTRGVIGLF-----EENCTVCMLCAREC 61

Query: 74  PAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           P   I I+S                     R+ ID   C+YCG+C E CP DA+   P F
Sbjct: 62  PDWCIYIDSHKETTPPAAPGGRERSRNVLDRFAIDFALCMYCGICIEVCPFDALFWSPEF 121

Query: 125 EFATETRQELYYDKERLLN 143
           E+A     EL +++++L  
Sbjct: 122 EYAETDIHELTHERDKLRE 140


>gi|159161215|ref|YP_001542501.1| NADH-plastoquinone oxidoreductase subunit I [Ceratophyllum
           demersum]
 gi|148508498|gb|ABQ81505.1| NADH-plastoquinone oxidoreductase subunit I [Ceratophyllum
           demersum]
 gi|227481173|emb|CAP62552.1| NADH dehydrogenase 18kD subunit [Ceratophyllum demersum]
          Length = 170

 Score = 97.9 bits (242), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFMITLSHANRLPITIQYPYEKSITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|290489754|gb|ADD31284.1| NADH-plastoquinone oxidoreductase subunit I protein [Dillenia
           indica]
          Length = 169

 Score = 97.9 bits (242), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFMITLSHANRLPVTIQYPYEKSITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R   Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKFETDIRKKRLFNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|75300874|sp|Q8HVR6|NDHI_HOFFA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|24460596|gb|AAN61738.1| NADH dehydrogenase subunit I [Hofmeisteria fasciculata]
          Length = 166

 Score = 97.9 bits (242), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFIITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYHRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|197131382|gb|ACH47209.1| NADH-plastoquinone oxidoreductase subunit I [Geranium carolinianum]
          Length = 173

 Score = 97.9 bits (242), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFMITLSHANRFPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R   Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKFETDIRKKRLFNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|156598455|gb|ABU85487.1| NADH-plastoquinone oxidoreductase subunit I [Passiflora biflora]
          Length = 163

 Score = 97.5 bits (241), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFMITLSHANRLPVTIQYPYEKFITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R   Y ID   CI+CG C E CP + +     +E +T +R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLFNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYSRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|32480899|ref|NP_862809.1| NADH dehydrogenase subunit I [Calycanthus floridus var. glaucus]
 gi|75297114|sp|Q7YJT0|NDHI_CALFG RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|32399435|emb|CAD28776.1| NADH dehydrogenase 18kD subunit [Calycanthus floridus var. glaucus]
          Length = 180

 Score = 97.5 bits (241), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFMITLSHANRLPVTIQYPYEKSITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               +          +R + Y ID   CI+CG C E CP + +     +E +   R EL 
Sbjct: 77  DLPVVHWRLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSAYNRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|194476797|ref|YP_002048976.1| NADH dehydrogenase subunit I [Paulinella chromatophora]
 gi|171191804|gb|ACB42766.1| NADH dehydrogenase subunit I [Paulinella chromatophora]
          Length = 176

 Score = 97.5 bits (241), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 6/123 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            V    +   +  +   T+ YP+EK   SPR+RG            +CIAC++C  +CP 
Sbjct: 22  IVQGLSVTFDHLKRRPITVQYPYEKLIPSPRYRGRIHFELD-----KCIACEVCVKVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVR-YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134
               ++  P       + +R Y ID   CI+C  C E CP   +     +E  +  R  L
Sbjct: 77  NLPVVDFVPGPTSKVGKELRNYSIDFGVCIFCANCVEYCPTQCLSMTEEYELTSFDRHNL 136

Query: 135 YYD 137
            YD
Sbjct: 137 NYD 139


>gi|156573585|gb|ABU85130.1| NADH-plastoquinone oxidoreductase subunit I [Yucca schidigera]
          Length = 180

 Score = 97.5 bits (241), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +  + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSLIITLSHTNRLPVTIQYPYEKSITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         ++ + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWRFEKDIKKKQLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|302536206|ref|ZP_07288548.1| NADH-plastoquinone oxidoreductase, I subunit [Streptomyces sp. C]
 gi|302445101|gb|EFL16917.1| NADH-plastoquinone oxidoreductase, I subunit [Streptomyces sp. C]
          Length = 203

 Score = 97.5 bits (241), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 46/166 (27%), Positives = 60/166 (36%), Gaps = 26/166 (15%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
                   + LR   K   T  YP  +    PR RG   L      EE C  C LC   C
Sbjct: 7   SGLAKGLAVTLRTMTKRAHTAQYPEVQPELPPRSRGVIGLF-----EENCTVCMLCAREC 61

Query: 74  PAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           P   I I+S                     R+ ID   C+YCG+C E CP DA+   P F
Sbjct: 62  PDWCIYIDSHKETVPAAAPGGRERSRNVLDRFAIDFSLCMYCGICIEVCPFDALFWSPEF 121

Query: 125 EFATETRQELYYDKERL------------LNNGDRWESEIVRNIVT 158
           E+A     EL +++++L            L+ G     EI      
Sbjct: 122 EYAETDIHELTHERDKLREWMWTVPAPPALDPGAEEPKEIAAARKA 167


>gi|86608350|ref|YP_477112.1| NADH dehydrogenase subunit I [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|110287710|sp|Q2JHK4|NDHI_SYNJB RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName:
           Full=NAD(P)H dehydrogenase I subunit I; AltName:
           Full=NDH-1 subunit I; Short=NDH-I
 gi|86556892|gb|ABD01849.1| NADH-ubiquinone/plastoquinone oxidoreductase, I subunit
           [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 210

 Score = 97.5 bits (241), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 +   +  +   T+ YPFEK   S RFRG            +CIAC++C  +CP 
Sbjct: 21  IGQGMGVVFDHMGRRPVTVQYPFEKLIPSERFRGRIHFEFD-----KCIACEICVRVCPI 75

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +    Y ID   CI+C  C E CP + +    ++E AT  R +L 
Sbjct: 76  DLPVVDWAYNPELKKKELYSYSIDFGVCIFCANCVEFCPTNCLSVTEDYELATYDRHDLN 135

Query: 136 YD 137
           Y 
Sbjct: 136 YH 137


>gi|333025064|ref|ZP_08453128.1| putative NADH dehydrogenase chain I [Streptomyces sp. Tu6071]
 gi|332744916|gb|EGJ75357.1| putative NADH dehydrogenase chain I [Streptomyces sp. Tu6071]
          Length = 192

 Score = 97.5 bits (241), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 54/139 (38%), Gaps = 14/139 (10%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
                   + LR   +   T  YP       PR RG   L      EE C  C LC   C
Sbjct: 7   TGLAKGLAVTLRTMTRKSVTAQYPDTLPPLPPRSRGVIGLF-----EENCTVCMLCAREC 61

Query: 74  PAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           P   I I+S                     R+ ID   C+YCG+C E CP DA+   P F
Sbjct: 62  PDWCIYIDSHKETVPPAAPGGRERSRNVLDRFAIDFSLCMYCGICIEVCPFDALFWSPEF 121

Query: 125 EFATETRQELYYDKERLLN 143
           E+A     EL +++++L  
Sbjct: 122 EYAETDIHELTHERDKLRE 140


>gi|325610549|gb|ADZ36491.1| NADH dehydrogenase 18 kDa subunit [Stewartia rubiginosa]
 gi|325610562|gb|ADZ36502.1| NADH dehydrogenase 18 kDa subunit [Stewartia serrata]
 gi|325610570|gb|ADZ36509.1| NADH dehydrogenase 18 kDa subunit [Stewartia monadelpha]
 gi|325610583|gb|ADZ36520.1| NADH dehydrogenase 18 kDa subunit [Stewartia rostrata]
          Length = 167

 Score = 97.5 bits (241), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFIITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|295065783|ref|YP_003587723.1| NADH dehydrogenase subunit I [Anomochloa marantoidea]
 gi|251765307|gb|ACT15461.1| NADH dehydrogenase subunit I [Anomochloa marantoidea]
          Length = 180

 Score = 97.5 bits (241), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI+YP+EK   S RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFIITLSHTNRLPITIHYPYEKSIASERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         ++ + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPLVDWRFEKDIKKKQLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|239943531|ref|ZP_04695468.1| putative NADH dehydrogenase chain I [Streptomyces roseosporus NRRL
           15998]
 gi|239989985|ref|ZP_04710649.1| putative NADH dehydrogenase chain I [Streptomyces roseosporus NRRL
           11379]
 gi|291446998|ref|ZP_06586388.1| NADH-quinone oxidoreductase subunit I 2 [Streptomyces roseosporus
           NRRL 15998]
 gi|291349945|gb|EFE76849.1| NADH-quinone oxidoreductase subunit I 2 [Streptomyces roseosporus
           NRRL 15998]
          Length = 203

 Score = 97.1 bits (240), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 42/139 (30%), Positives = 55/139 (39%), Gaps = 14/139 (10%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
                   + LR   K   T  YP  +    PR RG   L      EE C  C LC   C
Sbjct: 7   SGLAKGLAVTLRTMTKKTVTAQYPDTQPELPPRSRGVIGLF-----EENCTVCMLCAREC 61

Query: 74  PAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           P   I I+S                     R+ ID   C+YCG+C E CP DA+   P F
Sbjct: 62  PDWCIYIDSHKETSPPAAPGGRERSRNVLDRFAIDFSLCMYCGICIEVCPFDALFWSPEF 121

Query: 125 EFATETRQELYYDKERLLN 143
           E+A     EL +++++L  
Sbjct: 122 EYAETDIHELTHERDKLRE 140


>gi|115604989|ref|YP_784441.1| NADH-plastoquinone oxidoreductase subunit I [Drimys granadensis]
 gi|122164392|sp|Q06GU2|NDHI_DRIGR RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|112032717|gb|ABH88352.1| NADH-plastoquinone oxidoreductase subunit I [Drimys granadensis]
          Length = 180

 Score = 97.1 bits (240), Expect = 6e-19,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFMITLSHANRLPVTIQYPYEKSITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +   R EL 
Sbjct: 77  DLPVVDWRLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSIYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|15789837|ref|NP_279661.1| NADH dehydrogenase/oxidoreductase-like protein [Halobacterium sp.
           NRC-1]
 gi|169235558|ref|YP_001688758.1| NADH dehydrogenase-like complex subunit I [Halobacterium salinarum
           R1]
 gi|10580231|gb|AAG19141.1| NADH dehydrogenase/oxidoreductase-like protein [Halobacterium sp.
           NRC-1]
 gi|167726624|emb|CAP13409.1| NADH dehydrogenase-like complex subunit I [Halobacterium salinarum
           R1]
          Length = 153

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 45/130 (34%), Positives = 69/130 (53%), Gaps = 11/130 (8%)

Query: 13  LKEFVGAFFLCLRY-FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71
           +   + +    +++       T+ YP E    S RFRG H        +ERCI C+ CE 
Sbjct: 1   MIGLLKSMATTMKHALSGDTFTVEYPEEAPEVSARFRGVHKF-----SQERCIWCRQCEN 55

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           +CP   I I +        R   +Y++ + +CIYC LC+E CPVDAI+   NFEF  +T+
Sbjct: 56  VCPNDTIQIVTD-----NQRNGEQYNLHVGQCIYCRLCEEVCPVDAILLTENFEFTGDTK 110

Query: 132 QELYYDKERL 141
            +L ++KE+L
Sbjct: 111 HDLVFNKEQL 120


>gi|325610505|gb|ADZ36453.1| NADH dehydrogenase 18 kDa subunit [Schima khasiana]
 gi|325610513|gb|ADZ36460.1| NADH dehydrogenase 18 kDa subunit [Gordonia lasianthus]
 gi|325610521|gb|ADZ36467.1| NADH dehydrogenase 18 kDa subunit [Franklinia alatamaha]
          Length = 167

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFIITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +   R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSAYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|313183875|ref|YP_004021718.1| NADH-plastoquinone oxidoreductase subunit I [Prunus persica]
 gi|309321487|gb|ADO65028.1| NADH-plastoquinone oxidoreductase subunit I [Prunus persica]
          Length = 172

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  T+ RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFMITLSHANRLPVTIQYPYEKLITAERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|302521254|ref|ZP_07273596.1| NADH-plastoquinone oxidoreductase, I subunit [Streptomyces sp.
           SPB78]
 gi|318056640|ref|ZP_07975363.1| putative NADH dehydrogenase chain I [Streptomyces sp. SA3_actG]
 gi|318077269|ref|ZP_07984601.1| putative NADH dehydrogenase chain I [Streptomyces sp. SA3_actF]
 gi|302430149|gb|EFL01965.1| NADH-plastoquinone oxidoreductase, I subunit [Streptomyces sp.
           SPB78]
          Length = 192

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 54/139 (38%), Gaps = 14/139 (10%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
                   + LR   +   T  YP       PR RG   L      EE C  C LC   C
Sbjct: 7   TGLAKGLAVTLRTMTRKSVTAQYPDTLPPLPPRSRGVIGLF-----EENCTVCMLCAREC 61

Query: 74  PAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           P   I I+S                     R+ ID   C+YCG+C E CP DA+   P F
Sbjct: 62  PDWCIYIDSHKETVPPAAPGGRERSRNVLDRFAIDFSLCMYCGICIEVCPFDALFWSPEF 121

Query: 125 EFATETRQELYYDKERLLN 143
           E+A     EL +++++L  
Sbjct: 122 EYAETDIHELTHERDKLRE 140


>gi|218670705|ref|ZP_03520376.1| probable NADH-ubiquinone oxidoreductase protein [Rhizobium etli
           GR56]
          Length = 141

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 46/131 (35%), Positives = 68/131 (51%), Gaps = 2/131 (1%)

Query: 7   NVSFLFLKEFVGAFFLCLRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEERCIA 65
            + + F  +   A  L   Y F    T+ YP  EK     R+RG H L R   GE +C+A
Sbjct: 11  WIGWAFFADLANALVLTFGYLFSRTVTMQYPDKEKWLPYSRYRGHHFLTRDDEGEIKCVA 70

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           C+LC  ICP   I +        G R   +++ID  +C++CGLC++ACP DAI  G  +E
Sbjct: 71  CELCARICPCDCIEVVPYED-EKGNRHPAKFEIDTARCLFCGLCEDACPADAIALGQQYE 129

Query: 126 FATETRQELYY 136
           F++ +  +L  
Sbjct: 130 FSSFSSADLVI 140


>gi|197131390|gb|ACH47213.1| NADH-plastoquinone oxidoreductase subunit I [Sarcocaulon
           vanderietiae]
          Length = 176

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +  + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSLMITLSHANRFPVTIQYPYEKFITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPLVDWKFESDIRKKRLLNYSIDFGLCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|317046225|ref|YP_004072514.1| NADH dehydrogenase 18 kDa subunit [Corynocarpus laevigata]
 gi|309252942|gb|ADO60362.1| NADH dehydrogenase 18 kDa subunit [Corynocarpus laevigata]
          Length = 169

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|4150870|emb|CAA09813.1| ndhI protein [Hordeum vulgare subsp. vulgare]
          Length = 180

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F   L +  +   TI+YP+EK  T  RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFITTLSHTNRLPITIHYPYEKSITPERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         ++ + Y ID   CI+CG C E CP   +     +E +T  R EL 
Sbjct: 77  DLPVVDWRFEKDIKRKQLLNYSIDFGVCIFCGNCVEYCPTSCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|11497585|ref|NP_054992.1| NADH dehydrogenase subunit I [Spinacia oleracea]
 gi|18203252|sp|Q9M3I7|NDHI_SPIOL RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|7636166|emb|CAB88788.1| NADH dehydrogenase 18kD subunit [Spinacia oleracea]
          Length = 170

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C   CP 
Sbjct: 22  IGQSFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRACPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|294814432|ref|ZP_06773075.1| NADH-quinone oxidoreductase subunit I [Streptomyces clavuligerus
           ATCC 27064]
 gi|326442822|ref|ZP_08217556.1| NADH dehydrogenase subunit NuoI2 [Streptomyces clavuligerus ATCC
           27064]
 gi|294327031|gb|EFG08674.1| NADH-quinone oxidoreductase subunit I [Streptomyces clavuligerus
           ATCC 27064]
          Length = 212

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 56/139 (40%), Gaps = 14/139 (10%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
                   + LR   +   T  YP  +    PR RG   L      EE C  C LC   C
Sbjct: 7   SGLAKGLAVTLRTMTRKTVTAQYPDVQPDLPPRTRGVIGLF-----EENCTVCMLCAREC 61

Query: 74  PAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           P   I I+S                     R+ ID   C+YCG+C E CP DA+   P F
Sbjct: 62  PDWCIYIDSHKETVPAAAPGGRERSRNVLDRFAIDFSLCMYCGICIEVCPFDALFWSPEF 121

Query: 125 EFATETRQELYYDKERLLN 143
           E+A    +EL +++++L  
Sbjct: 122 EYAETDIRELTHERDKLRE 140


>gi|320161224|ref|YP_004174448.1| iron-sulfur binding protein [Anaerolinea thermophila UNI-1]
 gi|319995077|dbj|BAJ63848.1| iron-sulfur binding protein [Anaerolinea thermophila UNI-1]
          Length = 203

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 41/183 (22%), Positives = 63/183 (34%), Gaps = 35/183 (19%)

Query: 16  FVGAFFLCLRYF----------------------------FKAKTTINYPFEKGSTSPRF 47
            +   ++  ++F                             +   TI YP EK      F
Sbjct: 6   IIRGLWVTFKHFILTYIEDIRAGKKRYYTQEGILARTRSDVRGAFTIQYPEEKYPVPEEF 65

Query: 48  RGEHALRR----YPNGEERCIACKLCEAICPAQAIT--IESGPRCHDGTRRTVRYDIDMI 101
           R    L            RC +C +C  +CP Q I     + P           + ID+ 
Sbjct: 66  RYIPFLVYEEGENREKNYRCTSCGICAKVCPPQCIWIVRTTDPNTGKPIPAPAEFYIDVD 125

Query: 102 KCIYCGLCQEACPVDAIVEGPNFEFATETR-QELYYDKERLLNNGDRWESEIVRNIVTDS 160
            C+ CGLC E CP DAI    ++E A+  R  +  ++KERL      +     +N   + 
Sbjct: 126 ICMNCGLCAEYCPFDAIKMDHDYEIASYNRFADHIFNKERLGKPLSYYAQIRPQNFAREE 185

Query: 161 PYR 163
             R
Sbjct: 186 AAR 188


>gi|118430441|ref|YP_874706.1| NADH-plastoquinone oxidoreductase subunit I [Hordeum vulgare subsp.
           vulgare]
 gi|126302574|sp|O98692|NDHI_HORVU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|118201095|gb|ABK79466.1| NADH-plastoquinone oxidoreductase subunit I [Hordeum vulgare subsp.
           vulgare]
          Length = 180

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F   L +  +   TI+YP+EK  T  RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFITTLSHTNRLPITIHYPYEKSITPERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         ++ + Y ID   CI+CG C E CP   +     +E +T  R EL 
Sbjct: 77  DLPVVDWRFEKDIKRKQLLNYSIDFGVCIFCGNCVEYCPTSCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|149390405|ref|YP_001294404.1| NADH dehydrogenase subunit I [Dioscorea elephantipes]
 gi|156632612|sp|A6MMQ9|NDHI_DIOEL RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|148668097|gb|ABR01481.1| NADH-plastoquinone oxidoreductase subunit I [Dioscorea
           elephantipes]
          Length = 180

 Score = 97.1 bits (240), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK   S RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFIITLSHTNRLPVTIQYPYEKSIASERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++     +   ++ + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWRLEKNIKKKQLLNYSIDFGFCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|14017627|ref|NP_114312.1| NADH dehydrogenase subunit I [Triticum aestivum]
 gi|17380134|sp|P05312|NDHI_WHEAT RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|13928260|dbj|BAB47089.1| NADH dehydrogenase 18kDa subunit [Triticum aestivum]
          Length = 180

 Score = 97.1 bits (240), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F   L +  +   TI+YP+EK  T  RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFITTLSHTNRLPITIHYPYEKSITPERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         ++ + Y ID   CI+CG C E CP   +     +E +T  R EL 
Sbjct: 77  DLPVVDWRFEKDIKRKQLLNYSIDFGVCIFCGNCVEYCPTSCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|302543403|ref|ZP_07295745.1| NADH-quinone oxidoreductase subunit I 2 [Streptomyces hygroscopicus
           ATCC 53653]
 gi|302461021|gb|EFL24114.1| NADH-quinone oxidoreductase subunit I 2 [Streptomyces
           himastatinicus ATCC 53653]
          Length = 195

 Score = 97.1 bits (240), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 57/139 (41%), Gaps = 14/139 (10%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
                   + LR   +   T  YP  +    PR RG   L      EE C  C LC   C
Sbjct: 6   SGLAKGLAVTLRTMTRRSHTAQYPDAQPELPPRTRGVIGLF-----EENCTVCMLCAREC 60

Query: 74  PAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           P   I I+S                     R+ ID   C+YCG+C E CP DA+   P F
Sbjct: 61  PDWCIYIDSHKETVPPAAPGGRERSRNVLDRFAIDFALCMYCGICIEVCPFDALFWSPEF 120

Query: 125 EFATETRQELYYDKERLLN 143
           E+A E  ++L +++++L  
Sbjct: 121 EYAEEDIRDLTHERDKLRE 139


>gi|257051788|ref|YP_003129621.1| NADH-quinone oxidoreductase, chain I [Halorhabdus utahensis DSM
           12940]
 gi|256690551|gb|ACV10888.1| NADH-quinone oxidoreductase, chain I [Halorhabdus utahensis DSM
           12940]
          Length = 153

 Score = 97.1 bits (240), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 47/130 (36%), Positives = 66/130 (50%), Gaps = 11/130 (8%)

Query: 13  LKEFVGAFFLCLRYFF-KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71
           +   +      +++       T+ YP      SPRFRG H        +ERCI C+ CE 
Sbjct: 1   MIGVLKGMATTMKHALDGKTFTVEYPETAPEVSPRFRGVH-----KYSQERCIWCRQCEN 55

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           +CP   I I    +     R   +Y++ + +CIYC LC+E CP DAIV   NFEF  +T+
Sbjct: 56  VCPNDTIQIVMDDQ-----RNGEQYNLHVGQCIYCRLCEEVCPTDAIVLTQNFEFVGDTK 110

Query: 132 QELYYDKERL 141
            +L YDKE L
Sbjct: 111 DDLAYDKEEL 120


>gi|111074963|gb|ABH04825.1| NAD(P)H-quinone oxidoreductase 23 kDa subunit [Heliobacillus
           mobilis]
          Length = 147

 Score = 96.7 bits (239), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 38/126 (30%), Positives = 56/126 (44%), Gaps = 5/126 (3%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +   F+ ++ FF+   T  YP        RFRG            +CI+C +C   CP 
Sbjct: 6   LLKGMFVTIQEFFRKPVTEEYPDVMPDLGDRFRGGTI----KLKTSKCISCGICMNSCPN 61

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            +I + S  R  +  R    Y  D   C+YC LC E+CPV  I     F F+  +R++L 
Sbjct: 62  GSIKLTSV-RDENNKRHLSTYVHDSGLCLYCNLCIESCPVKCIDWTNEFAFSGYSREDLI 120

Query: 136 YDKERL 141
           +D   L
Sbjct: 121 FDCIDL 126


>gi|156598297|gb|ABU85410.1| NADH-plastoquinone oxidoreductase subunit I [Musa acuminata]
          Length = 180

 Score = 96.7 bits (239), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFIITLSHTNRLPVTIQYPYEKSITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         ++ + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWRLERDMKKKQLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|290489784|gb|ADD31299.1| NADH-plastoquinone oxidoreductase subunit I protein [Liquidambar
           styraciflua]
          Length = 160

 Score = 96.7 bits (239), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|12342|emb|CAA29900.1| unnamed protein product [Triticum aestivum]
          Length = 176

 Score = 96.7 bits (239), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F   L +  +   TI+YP+EK  T  RFRG            +CIAC++C  +CP 
Sbjct: 24  IGQSFITTLSHTNRLPITIHYPYEKSITPERFRGRIHFEFD-----KCIACEVCVGVCPI 78

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         ++ + Y ID   CI+CG C E CP   +     +E +T  R EL 
Sbjct: 79  DLPVVDWRFEKDIKKKQLLNYSIDFGVCIFCGNCVEYCPTSCLSMTEEYELSTYDRHELN 138

Query: 136 YD 137
           Y+
Sbjct: 139 YN 140


>gi|325610555|gb|ADZ36496.1| NADH dehydrogenase 18 kDa subunit [Stewartia pseudocamellia]
 gi|325610590|gb|ADZ36526.1| NADH dehydrogenase 18 kDa subunit [Stewartia sinensis]
          Length = 167

 Score = 96.7 bits (239), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFIITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +   R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSAYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|302553482|ref|ZP_07305824.1| NADH-plastoquinone oxidoreductase, I subunit [Streptomyces
           viridochromogenes DSM 40736]
 gi|302471100|gb|EFL34193.1| NADH-plastoquinone oxidoreductase, I subunit [Streptomyces
           viridochromogenes DSM 40736]
          Length = 183

 Score = 96.7 bits (239), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 56/139 (40%), Gaps = 14/139 (10%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
                   + LR   K   T  YP  +    PR RG   L      EE C  C LC   C
Sbjct: 7   SGLAKGLAVTLRTMTKKSVTAQYPDAQPDLPPRTRGVIGLF-----EENCTVCMLCAREC 61

Query: 74  PAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           P   I I+S                     R+ ID   C+YCG+C E CP DA+   P F
Sbjct: 62  PDWCIYIDSHKETVPAATPGGRERSRNVLDRFAIDFSLCMYCGICIEVCPFDALFWSPEF 121

Query: 125 EFATETRQELYYDKERLLN 143
           E+A    ++L +++++L  
Sbjct: 122 EYAETDIRDLTHERDKLRE 140


>gi|114329711|ref|YP_740531.1| NADH-plastoquinone oxidoreductase subunit I [Citrus sinensis]
 gi|122166137|sp|Q09MC2|NDHI_CITSI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|113952677|gb|ABI49075.1| NADH-plastoquinone oxidoreductase subunit I [Citrus sinensis]
          Length = 167

 Score = 96.7 bits (239), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L    +   TI YP+EK   S RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFMITLSQANRLPVTIQYPYEKLIPSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E AT  R EL 
Sbjct: 77  DLPVVDWKFETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELATYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|309812472|ref|ZP_07706227.1| 4Fe-4S binding domain protein [Dermacoccus sp. Ellin185]
 gi|308433777|gb|EFP57654.1| 4Fe-4S binding domain protein [Dermacoccus sp. Ellin185]
          Length = 211

 Score = 96.7 bits (239), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 43/138 (31%), Positives = 58/138 (42%), Gaps = 14/138 (10%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           ++  +       R   K  +   YP  K    PR RG  AL      EE C AC LC   
Sbjct: 40  IRGLLAGMRTTARTMTKKTSVQQYPDVKPDLPPRSRGVIALL-----EENCTACMLCARE 94

Query: 73  CPAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           CP   + I+S                     R+ ID   C+YCG+C E CP DA+   P 
Sbjct: 95  CPDWCLYIDSHKETVPSETPGGRDRQRNVVDRFAIDFSLCMYCGICIEVCPFDALFWSPE 154

Query: 124 FEFATETRQELYYDKERL 141
           FE+AT   ++L  +K+ L
Sbjct: 155 FEYATNDIRDLLQEKDEL 172


>gi|226227801|ref|YP_002761907.1| NADH-quinone oxidoreductase chain I [Gemmatimonas aurantiaca T-27]
 gi|226090992|dbj|BAH39437.1| NADH-quinone oxidoreductase chain I [Gemmatimonas aurantiaca T-27]
          Length = 185

 Score = 96.7 bits (239), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 46/156 (29%), Positives = 76/156 (48%), Gaps = 18/156 (11%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLC----LRYFF------KAKTTINYPFEKG-STSPRFRG 49
           M ++       +L E +    +     LR         +   T  YP E+    +PR RG
Sbjct: 1   MTLWERA----YLPEVLRGLAITTGVFLRNMGKWITGRRGAVTTYYPEERRADFAPRNRG 56

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESG--PRCHDGTRRTVRYDIDMIKCIYCG 107
           +H L + P+G  +CIAC +C  +CPA+ I IE G         +  VR++ID  +C++CG
Sbjct: 57  KHVLTQRPDGSVQCIACNMCATVCPAKVIEIEPGFDMNDPAHPKYPVRFEIDYSRCVFCG 116

Query: 108 LCQEACPVDAIVEGPNF-EFATETRQELYYDKERLL 142
           +C EACP DAI   P+     ++ R  ++   + ++
Sbjct: 117 MCVEACPEDAIRMEPDVPNLVSDDRYNMWITMDEMM 152


>gi|302559057|ref|ZP_07311399.1| NADH-quinone oxidoreductase subunit I 2 [Streptomyces griseoflavus
           Tu4000]
 gi|302476675|gb|EFL39768.1| NADH-quinone oxidoreductase subunit I 2 [Streptomyces griseoflavus
           Tu4000]
          Length = 183

 Score = 96.7 bits (239), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 56/139 (40%), Gaps = 14/139 (10%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
                   + LR   K   T  YP  +    PR RG   L      EE C  C LC   C
Sbjct: 7   SGLAKGLAVTLRTMTKKSVTAPYPDTQPDLPPRTRGVIGLF-----EENCTVCMLCAREC 61

Query: 74  PAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           P   I I+S                     R+ ID   C+YCG+C E CP DA+   P F
Sbjct: 62  PDWCIYIDSHKETVPAAAPGGRDRSRNVLDRFAIDFSLCMYCGICIEVCPFDALFWSPEF 121

Query: 125 EFATETRQELYYDKERLLN 143
           E+A    ++L +++++L  
Sbjct: 122 EYAETDIRDLTHERDKLRE 140


>gi|194033200|ref|YP_002000539.1| NADH dehydrogenase subunit I [Brachypodium distachyon]
 gi|193075608|gb|ACF08691.1| NADH dehydrogenase 18kDa subunit [Brachypodium distachyon]
          Length = 180

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F   L +  +   TI+YP+EK  T  RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFITTLSHTNRLPITIHYPYEKSITPERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         ++ + Y ID   CI+CG C E CP   +     +E +T  R EL 
Sbjct: 77  DLPIVDWRFEKAVKRKQLLNYSIDFGVCIFCGNCVEYCPTSCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|84494889|ref|ZP_00994008.1| NADH dehydrogenase subunit [Janibacter sp. HTCC2649]
 gi|84384382|gb|EAQ00262.1| NADH dehydrogenase subunit [Janibacter sp. HTCC2649]
          Length = 184

 Score = 96.7 bits (239), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 44/138 (31%), Positives = 56/138 (40%), Gaps = 14/138 (10%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           L   +       +   K   T  YP       PR RG  AL      EE C +C LC   
Sbjct: 10  LPGILKGLATTAKTAMKPVHTHEYPDVAPDLPPRSRGVIALL-----EENCTSCMLCARE 64

Query: 73  CPAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           CP   I IES                      + ID   C+YCG+C E CP DA+   P 
Sbjct: 65  CPDWCIYIESHKETIPATTEGGRERQRNVLDDFSIDFSLCMYCGICIEVCPFDALFWSPQ 124

Query: 124 FEFATETRQELYYDKERL 141
           FE+A  +  +L +DK+RL
Sbjct: 125 FEYAETSILDLLHDKDRL 142


>gi|149390595|ref|YP_001294239.1| NADH-plastoquinone oxidoreductase subunit I [Buxus microphylla]
 gi|156632607|sp|A6MM91|NDHI_BUXMI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|146762340|gb|ABQ45304.1| NADH-plastoquinone oxidoreductase subunit I [Buxus microphylla]
          Length = 182

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFMITLSHTNRLPVTIQYPYEKLLTSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++     +   +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETYIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|328884359|emb|CCA57598.1| NADH-ubiquinone oxidoreductase chain I [Streptomyces venezuelae
           ATCC 10712]
          Length = 186

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/139 (30%), Positives = 55/139 (39%), Gaps = 14/139 (10%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
                   + LR   K   T  YP  +    PR RG   L      EE C  C LC   C
Sbjct: 7   SGLAKGLAVTLRTMTKKTVTAQYPDVQPELPPRTRGVIGLF-----EENCTVCMLCAREC 61

Query: 74  PAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           P   I I+S                     R+ ID   C+YCG+C E CP DA+   P F
Sbjct: 62  PDWCIYIDSHKETVPAAVPGGRERSRNVLDRFAIDFSLCMYCGICIEVCPFDALFWSPEF 121

Query: 125 EFATETRQELYYDKERLLN 143
           E+A     EL +++++L  
Sbjct: 122 EYAETDIHELTHERDKLRE 140


>gi|325126919|ref|YP_004286156.1| NADH-plastoquinone oxidoreductase subunit I [Fragaria vesca subsp.
           vesca]
 gi|324022831|gb|ADY15405.1| NADH-plastoquinone oxidoreductase subunit I [Fragaria vesca subsp.
           vesca]
          Length = 167

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  T+ RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFIITLSHANRLPVTIQYPYEKLITAERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|290489760|gb|ADD31287.1| NADH-plastoquinone oxidoreductase subunit I protein [Lonicera
           japonica]
          Length = 165

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFTITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +   R EL 
Sbjct: 77  DLPIVDWKLETDIRKKRLLNYSIDFGICIFCGNCIEYCPTNCLSMTEEYELSVYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|118430357|ref|YP_874791.1| NADH-plastoquinone oxidoreductase subunit I [Agrostis stolonifera]
 gi|125952727|sp|A1EA63|NDHI_AGRST RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|118201266|gb|ABK79635.1| NADH-plastoquinone oxidoreductase subunit I [Agrostis stolonifera]
          Length = 180

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F   L +  +   TI+YP+EK  T  RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFITTLSHTNRLPITIHYPYEKSITPERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         ++ + Y ID   CI+CG C E CP   +     +E +T  R EL 
Sbjct: 77  DLPVVDWRFEKDIKRKQLLNYSIDFGVCIFCGNCVEYCPTSCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|255961435|ref|YP_003097630.1| NADH-plastoquinone oxidoreductase subunit I [Dendrocalamus
           latiflorus]
 gi|255040312|gb|ACT99972.1| NADH-plastoquinone oxidoreductase subunit I [Dendrocalamus
           latiflorus]
          Length = 180

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI+YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFIITLSHTNRLPITIHYPYEKSITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         ++ + Y ID   CI+CG C E CP   +     +E +T  R EL 
Sbjct: 77  DLPLVDWRFEKDIKRKQLLNYSIDFGVCIFCGNCVEYCPTSCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|289065143|ref|YP_003434029.1| NADH-plastoquinone oxidoreductase subunit I [Typha latifolia]
 gi|281371826|gb|ADA63753.1| NADH-plastoquinone oxidoreductase subunit I [Typha latifolia]
          Length = 180

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  T+ RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFIITLSHTNRLPVTIQYPYEKSITTERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         ++ + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWRFEKDIKKKQLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|225155891|ref|ZP_03724376.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Opitutaceae
           bacterium TAV2]
 gi|224803344|gb|EEG21582.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Opitutaceae
           bacterium TAV2]
          Length = 223

 Score = 96.3 bits (238), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 14/145 (9%)

Query: 11  LFLKEFVGAFFLCLRYF------FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE--- 61
           +F    +    +  + F       +  TT+ YP ++ +    FR    L       +   
Sbjct: 1   MFGTGILKGLVVTAKNFAGSYHDPRRLTTVQYPEQRTTLPENFRSFPFLVFDEIEGKSPI 60

Query: 62  ---RCIACKLCEAICPAQAITIESGPRCHDGT-RRTVRYDIDMIKCIYCGLCQEACPVDA 117
              RC+ACK+CE  CP Q I I           ++   +DID   C+ CGLC E+CP D+
Sbjct: 61  EGLRCVACKICEKECPPQCIYIVPERDEKGKALKKPAIFDIDFSVCMGCGLCAESCPFDS 120

Query: 118 IVEGPNFEFATETR-QELYYDKERL 141
           I    ++E     R ++L   +++L
Sbjct: 121 IKMDHHYEITANNRYEDLLVHRDQL 145


>gi|253729608|ref|YP_003029793.1| Ndhl [Bambusa oldhamii]
 gi|246367118|gb|ACS94729.1| Ndhl [Bambusa oldhamii]
          Length = 180

 Score = 95.9 bits (237), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI+YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFIITLSHTNRLPITIHYPYEKSITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         ++ + Y ID   CI+CG C E CP   +     +E +T  R EL 
Sbjct: 77  DLPLVDWRFEKDIKRKQLLNYSIDFGVCIFCGNCVEYCPTSCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|29831428|ref|NP_826062.1| NADH dehydrogenase I chain I [Streptomyces avermitilis MA-4680]
 gi|81718086|sp|Q82DT3|NUOI2_STRAW RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName:
           Full=NADH dehydrogenase I subunit I 2; AltName:
           Full=NDH-1 subunit I 2
 gi|29608543|dbj|BAC72597.1| putative NADH dehydrogenase I chain I (complex I) [Streptomyces
           avermitilis MA-4680]
          Length = 216

 Score = 95.9 bits (237), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 42/139 (30%), Positives = 55/139 (39%), Gaps = 14/139 (10%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
                   + LR   K   T  YP  +    PR RG   L      EE C  C LC   C
Sbjct: 7   SGLAKGLAVTLRTMTKKTVTAQYPDAQPELPPRSRGVIGLF-----EENCTVCMLCAREC 61

Query: 74  PAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           P   I I+S                     R+ ID   C+YCG+C E CP DA+   P F
Sbjct: 62  PDWCIYIDSHKETVPPAAPGGRERSRNVLDRFAIDFSLCMYCGICIEVCPFDALFWSPEF 121

Query: 125 EFATETRQELYYDKERLLN 143
           E+A     EL +++++L  
Sbjct: 122 EYAETDIHELTHERDKLRE 140


>gi|257387968|ref|YP_003177741.1| NADH-quinone oxidoreductase, chain I [Halomicrobium mukohataei DSM
           12286]
 gi|257170275|gb|ACV48034.1| NADH-quinone oxidoreductase, chain I [Halomicrobium mukohataei DSM
           12286]
          Length = 153

 Score = 95.9 bits (237), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 47/130 (36%), Positives = 71/130 (54%), Gaps = 11/130 (8%)

Query: 13  LKEFVGAFFLCLRYFF-KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71
           +   + +    +++       T++YP E    SPRFRG H        +ERCI C+ CE 
Sbjct: 1   MIGILKSMATTMKHALDGETFTVSYPEEVPEVSPRFRGVHKF-----SQERCIWCRQCEN 55

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           +CP   I I +  +     R   +Y++ + +CIYC LC+E CPVDAI+   NFEF  +T+
Sbjct: 56  VCPNNTIQIVTDDQ-----RNGEQYNLHIGQCIYCRLCEEVCPVDAILLTQNFEFTADTK 110

Query: 132 QELYYDKERL 141
            E  Y+KE+L
Sbjct: 111 DEFAYNKEQL 120


>gi|290489786|gb|ADD31300.1| NADH-plastoquinone oxidoreductase subunit I protein [Oxalis
           latifolia]
          Length = 167

 Score = 95.9 bits (237), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFMIALSHANRLPVTIQYPYEKLITSDRFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKFETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|115528430|gb|AAI19754.1| NDUFS8 protein [Homo sapiens]
          Length = 64

 Score = 95.9 bits (237), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 48/64 (75%), Positives = 54/64 (84%)

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
           M KCIYCG CQEACPVDAIVEGPNFEF+TET +EL Y+KE+LLNNGD+WE+EI  NI  D
Sbjct: 1   MTKCIYCGFCQEACPVDAIVEGPNFEFSTETHEELLYNKEKLLNNGDKWEAEIAANIQAD 60

Query: 160 SPYR 163
             YR
Sbjct: 61  YLYR 64


>gi|115531975|ref|YP_784131.1| NADH-plastoquinone oxidoreductase subunit 8 [Pelargonium x
           hortorum]
 gi|122164264|sp|Q06FQ0|NDHI_PELHO RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|112382129|gb|ABI17322.1| NADH-plastoquinone oxidoreductase subunit 8 [Pelargonium x
           hortorum]
          Length = 167

 Score = 95.9 bits (237), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 39/126 (30%), Positives = 59/126 (46%), Gaps = 5/126 (3%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +  + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSLIITLSHSNRFPVTIQYPYEKLMTSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKFERDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YDKERL 141
           Y++  L
Sbjct: 137 YNQTAL 142


>gi|11467259|ref|NP_043091.1| NADH dehydrogenase subunit I [Zea mays]
 gi|1171861|sp|P46722|NDHI_MAIZE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|902288|emb|CAA60352.1| NADH dehydrogenase subunit [Zea mays]
          Length = 180

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI+YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFIITLSHTNRLPITIHYPYEKSITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         ++ + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPLVDWRFEKDIKRKQLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|150004309|ref|YP_001299053.1| NADH dehydrogenase I chain I [Bacteroides vulgatus ATCC 8482]
 gi|212693815|ref|ZP_03301943.1| hypothetical protein BACDOR_03336 [Bacteroides dorei DSM 17855]
 gi|237709343|ref|ZP_04539824.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|237724577|ref|ZP_04555058.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|265755019|ref|ZP_06089933.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|294776880|ref|ZP_06742343.1| 4Fe-4S binding domain protein [Bacteroides vulgatus PC510]
 gi|319644244|ref|ZP_07998757.1| hypothetical protein HMPREF9011_04360 [Bacteroides sp. 3_1_40A]
 gi|149932733|gb|ABR39431.1| NADH dehydrogenase I chain I [Bacteroides vulgatus ATCC 8482]
 gi|212663704|gb|EEB24278.1| hypothetical protein BACDOR_03336 [Bacteroides dorei DSM 17855]
 gi|229437136|gb|EEO47213.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|229456728|gb|EEO62449.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|263234630|gb|EEZ20209.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|294449356|gb|EFG17893.1| 4Fe-4S binding domain protein [Bacteroides vulgatus PC510]
 gi|317384235|gb|EFV65207.1| hypothetical protein HMPREF9011_04360 [Bacteroides sp. 3_1_40A]
          Length = 150

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/131 (34%), Positives = 59/131 (45%), Gaps = 6/131 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEK--GSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +    +  R FF  K T  YP  +     SPRFRG   +    NG  +CIAC LC+  C
Sbjct: 19  LLTGMKVTGREFFTPKVTEQYPENRATLKISPRFRGRLIMPVDENGNNKCIACGLCQMAC 78

Query: 74  PAQAITIESG----PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           P   ITI S            +  V+Y+ D+  C++C LC  ACP DAI     FE A  
Sbjct: 79  PNDTITITSESVTNEETGKKKKILVKYEYDLGACMFCQLCVNACPHDAIRFDTEFENAVF 138

Query: 130 TRQELYYDKER 140
            R +L     +
Sbjct: 139 DRSKLVLTLNK 149


>gi|313126882|ref|YP_004037152.1| NADH-quinone oxidoreductase, chain i [Halogeometricum borinquense
           DSM 11551]
 gi|312293247|gb|ADQ67707.1| NADH-quinone oxidoreductase, chain I [Halogeometricum borinquense
           DSM 11551]
          Length = 153

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 46/130 (35%), Positives = 68/130 (52%), Gaps = 11/130 (8%)

Query: 13  LKEFVGAFFLCLRYFF-KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71
           +   + +    +++       T+ YP      SPRFRG H        +ERCI C+ CE 
Sbjct: 1   MIGLLKSMATTMKHALDGETFTVEYPDVAPEVSPRFRGVHKF-----SQERCIWCRQCEN 55

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           +CP   I I    +     R   +Y++ + +CIYC LC+E CPVDAI+   NFEF  +T+
Sbjct: 56  VCPNDTIQIVQDDQ-----RNGEQYNLHIGQCIYCRLCEEVCPVDAILLTQNFEFTADTK 110

Query: 132 QELYYDKERL 141
            E  Y+KE+L
Sbjct: 111 DEFVYNKEQL 120


>gi|290489778|gb|ADD31296.1| NADH-plastoquinone oxidoreductase subunit I protein [Ficus sp.
           Moore 315]
          Length = 166

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK   + RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFMITLSHVNRLPITIQYPYEKVIATERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               I+         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVIDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|46805102|dbj|BAD17341.1| rice chloroplast 18kDa protein related to a subunit of NADH
           dehydrogenase [Oryza sativa Japonica Group]
          Length = 180

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI+YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFIITLSHTNRLPITIHYPYEKSITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         ++ + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPLVDWRFEKDIKRKQLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|309322123|ref|YP_003933939.1| NADH-plastoquinone oxidoreductase subunit I [Erodium texanum]
 gi|197131380|gb|ACH47208.1| NADH-plastoquinone oxidoreductase subunit I [Erodium texanum]
 gi|300069216|gb|ADJ66338.1| NADH-plastoquinone oxidoreductase subunit I [Erodium texanum]
          Length = 171

 Score = 95.9 bits (237), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +  + L +  +   TI YP+EK  TS R RG            +CIAC++C  +CP 
Sbjct: 22  IGQSLMITLSHANRFPVTIQYPYEKLITSERVRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++   +     +R   Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKFQTDIRKKRLFNYSIDFGICIFCGNCVEYCPTNCLAMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|159106918|ref|YP_001531336.1| NADH-plastoquinone oxidoreductase subunit I [Lolium perenne]
 gi|158934452|emb|CAO86030.1| NADH-plastoquinone oxidoreductase subunit I [Lolium perenne]
          Length = 180

 Score = 95.6 bits (236), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F   L +  +   TI+YP+EK  T  RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFITTLSHTNRLPITIHYPYEKSITPERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++   +     ++ + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPLVDWRFKKDIKRKQLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|290790889|gb|ADD63145.1| NADH-plastoquinone oxidoreductase subunit I [Microlaena stipoides]
          Length = 180

 Score = 95.6 bits (236), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI+YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFIITLSHTNRLPITIHYPYEKSITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         ++ + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPLVDWRFEKDIKRKQLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|50234042|ref|YP_052819.1| NADH dehydrogenase subunit I [Oryza nivara]
 gi|109156637|ref|YP_654256.1| NADH dehydrogenase subunit I [Oryza sativa Indica Group]
 gi|68565729|sp|Q6ENA3|NDHI_ORYNI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|148887177|sp|P0C384|NDHI_ORYSA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|148887178|sp|P0C385|NDHI_ORYSI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|148887179|sp|P0C386|NDHI_ORYSJ RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|42795529|gb|AAS46096.1| NADH dehydrogenase subunit I [Oryza sativa Indica Group]
 gi|42795595|gb|AAS46161.1| NADH dehydrogenase subunit I [Oryza sativa Japonica Group]
 gi|42795659|gb|AAS46224.1| NADH dehydrogenase subunit I [Oryza sativa Japonica Group]
 gi|49615066|dbj|BAD26849.1| NADH dehydrogenase subunit I [Oryza nivara]
 gi|290790616|gb|ADD62876.1| NADH-plastoquinone oxidoreductase subunit I [Oryza sativa Japonica
           Group]
 gi|290790685|gb|ADD62944.1| NADH-plastoquinone oxidoreductase subunit I [Oryza meridionalis]
 gi|290790754|gb|ADD63012.1| NADH-plastoquinone oxidoreductase subunit I [Oryza australiensis]
 gi|290790822|gb|ADD63079.1| NADH-plastoquinone oxidoreductase subunit I [Potamophila
           parviflora]
          Length = 180

 Score = 95.6 bits (236), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI+YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFIITLSHTNRLPITIHYPYEKSITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         ++ + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPLVDWRFEKDIKRKQLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|309792513|ref|ZP_07686977.1| hypothetical protein OSCT_2928 [Oscillochloris trichoides DG6]
 gi|308225501|gb|EFO79265.1| hypothetical protein OSCT_2928 [Oscillochloris trichoides DG6]
          Length = 386

 Score = 95.6 bits (236), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 40/141 (28%), Positives = 53/141 (37%), Gaps = 15/141 (10%)

Query: 16  FVGAFFLCLRYF---FKA---------KTTINYPFEKGSTSPRFRGEHALRRYPN-GEER 62
            +    +   ++   F+            TI YP E+      +R    L      G E 
Sbjct: 24  LLQGLKVVWDHWIGSFRKNENFSQIHGTFTIEYPDERMKLPQAYRNMPVLIYDDETGHEL 83

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTV--RYDIDMIKCIYCGLCQEACPVDAIVE 120
           C AC  C   CP + I I      + G        + I+   C+ CGLC EACP DAI  
Sbjct: 84  CTACYQCARACPPEVIHITQAKDPNTGKMVPASLEFIIEYDACMSCGLCAEACPFDAIKM 143

Query: 121 GPNFEFATETRQELYYDKERL 141
              FE AT+ R  L   K  L
Sbjct: 144 DHFFELATDDRMGLLQRKADL 164


>gi|296121588|ref|YP_003629366.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Planctomyces
           limnophilus DSM 3776]
 gi|296013928|gb|ADG67167.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Planctomyces
           limnophilus DSM 3776]
          Length = 176

 Score = 95.6 bits (236), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/147 (27%), Positives = 58/147 (39%), Gaps = 12/147 (8%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFF----KAKTTI--NYPFEKGSTSPRFRGEHALR 54
           MRI+  NV +L +   +   +L LR +     +   T    YP +      R+RG H   
Sbjct: 1   MRIWLQNV-WLAVSSVIRGLWLTLRVWLKTYRRPTFTEVYEYPEQPIPLKARYRGFHRF- 58

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                   CI C  C   CP   I I           +   + ID  KC++C LC + CP
Sbjct: 59  ----DLTTCIGCDKCAVACPVDCIYINKSRVPGSKGFQVDGFAIDYTKCMFCALCVDPCP 114

Query: 115 VDAIVEGPNFEFATETRQELYYDKERL 141
           VD I  G N + +   R     D  +L
Sbjct: 115 VDCIFMGSNHDLSCYNRDGCVVDYAKL 141


>gi|242910156|ref|YP_002970699.1| NADH-plastoquinone oxidoreductase subunit I [Alsophila spinulosa]
 gi|218454825|gb|ACK77162.1| NADH-plastoquinone oxidoreductase subunit I [Alsophila spinulosa]
          Length = 182

 Score = 95.6 bits (236), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  +S RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFAVTLDHLNRLPITIQYPYEKIVSSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         ++   Y  D   CI+ G C E CP + +     +E ++  R EL 
Sbjct: 77  NLPVVDWKLIKSIRKKQLKSYSTDFGVCIFRGNCVEYCPTNCLSMTEEYELSSYDRHELN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|254883416|ref|ZP_05256126.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|254836209|gb|EET16518.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 151

 Score = 95.6 bits (236), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 45/131 (34%), Positives = 59/131 (45%), Gaps = 6/131 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEK--GSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +    +  R FF  K T  YP  +     SPRFRG   +    NG  +CIAC LC+  C
Sbjct: 20  LLTGMKVTGREFFTPKVTEQYPENRATLKISPRFRGRLIMPVDENGNNKCIACGLCQMAC 79

Query: 74  PAQAITIESG----PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           P   ITI S            +  V+Y+ D+  C++C LC  ACP DAI     FE A  
Sbjct: 80  PNDTITITSESVTNEETGKKKKILVKYEYDLGACMFCQLCVNACPHDAIRFDTEFENAVF 139

Query: 130 TRQELYYDKER 140
            R +L     +
Sbjct: 140 DRSKLVLTLNK 150


>gi|114804317|ref|YP_762314.1| NADH-plastoquinone oxidoreductase subunit I [Morus indica]
 gi|122166757|sp|Q09WW4|NDHI_MORIN RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|78100369|gb|ABB21010.1| NADH-plastoquinone oxidoreductase subunit I [Morus indica]
          Length = 167

 Score = 95.6 bits (236), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK   + RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFMITLSHVNRLPITIQYPYEKVIAAERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         ++ + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKQLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|11466851|ref|NP_039448.1| NADH dehydrogenase subunit I [Oryza sativa Japonica Group]
 gi|12054|emb|CAA33909.1| 18kDa protein related to a subunit of NADH dehydroghenase [Oryza
           sativa Japonica Group]
 gi|226675|prf||1603356DC NADH dehydrogenase-like 18kD protein
          Length = 178

 Score = 95.6 bits (236), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI+YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 20  IGQSFIITLSHTNRLPITIHYPYEKSITSERFRGRIHFEFD-----KCIACEVCVRVCPI 74

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         ++ + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 75  DLPLVDWRFEKDIKRKQLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 134

Query: 136 YD 137
           Y+
Sbjct: 135 YN 136


>gi|13518491|ref|NP_084849.1| NADH dehydrogenase subunit I [Lotus japonicus]
 gi|31563216|sp|Q9BBP0|NDHI_LOTJA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|13359032|dbj|BAB33249.1| NADH dehydrogenase subunit [Lotus japonicus]
          Length = 161

 Score = 95.6 bits (236), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++     +   +R + Y ID   CI+CG C E CP + +     +E +   R EL 
Sbjct: 77  DLPVVDWKLETNIRKKRLLNYSIDFGICIFCGNCIEYCPTNCLSMTEEYELSAYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|311896696|dbj|BAJ29104.1| putative NADH-quinone oxidoreductase subunit I [Kitasatospora setae
           KM-6054]
          Length = 192

 Score = 95.2 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 42/139 (30%), Positives = 57/139 (41%), Gaps = 14/139 (10%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
                   + +R   +   T  YP  +    PR RG  AL      EE C  C LC   C
Sbjct: 6   SGLAKGLAVTMRTMMRKTVTAQYPDVQPDLPPRSRGVIALL-----EENCTVCMLCAREC 60

Query: 74  PAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           P   I I+S                     R+ ID   C+YCG+C E CP DA+   P F
Sbjct: 61  PDWCIYIDSHKETLPAADPNARARTRNVLDRFAIDFSLCMYCGICVEVCPFDALFWSPEF 120

Query: 125 EFATETRQELYYDKERLLN 143
           E+A    +EL ++++RL  
Sbjct: 121 EYAETDIRELTHERDRLRE 139


>gi|332708451|ref|ZP_08428427.1| NADH-plastoquinone oxidoreductase subunit I protein [Lyngbya
           majuscula 3L]
 gi|332352782|gb|EGJ32346.1| NADH-plastoquinone oxidoreductase subunit I protein [Lyngbya
           majuscula 3L]
          Length = 201

 Score = 95.2 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 +   +  +   T+ YP+EK   S R+RG            +CI+C++C  +CP 
Sbjct: 22  IGQGISVTFDHMQRRPITVQYPYEKLIPSERYRGRIHFEFD-----KCISCEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +    Y ID   CI+C  C E CP + +     +E +T  R EL 
Sbjct: 77  NLPVVDYEFDKATKKKNLKHYSIDFGVCIFCANCIEYCPTNCLSATEEYEISTYDRHELN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|261416726|ref|YP_003250409.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261373182|gb|ACX75927.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|302326992|gb|ADL26193.1| NADH-quinone oxidoreductase, I subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 157

 Score = 95.2 bits (235), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/133 (30%), Positives = 54/133 (40%), Gaps = 7/133 (5%)

Query: 14  KEFVGAFFLCLRYFFKAK--TTINYPFEK--GSTSPRFRGEHALRRYPNGEERCIACKLC 69
              +    + L+YFF  K   T  YP  +       R+RG   +    +G   C AC +C
Sbjct: 23  WSLICGLSVTLKYFFNPKRIVTEQYPENRKTLKMHDRYRGRLEMIEDADGNNHCTACGMC 82

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           E  CP  A       +   G +   RY      C  CGLC EACP  AI   P FE AT 
Sbjct: 83  ERACP-NASINVLATKNIAGKKVLGRYVYHFASCTQCGLCVEACPFGAIRMSPAFEVATT 141

Query: 130 TRQEL--YYDKER 140
              +L    +K+ 
Sbjct: 142 DPNDLEMILNKKE 154


>gi|261879873|ref|ZP_06006300.1| NADH-ubiquinone oxidoreductase [Prevotella bergensis DSM 17361]
 gi|270333466|gb|EFA44252.1| NADH-ubiquinone oxidoreductase [Prevotella bergensis DSM 17361]
          Length = 179

 Score = 94.8 bits (234), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 61/134 (45%), Gaps = 7/134 (5%)

Query: 19  AFFLCLRYFFKAKTTINYPFEK---GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                L+ +F  K+T  YP  +      SPRFRG    +R  NG  RC+AC +CE  CP 
Sbjct: 22  GLKTTLKEYFTPKSTEQYPENRKTTLHVSPRFRGRLVFKRDENGAHRCVACTMCEKACPN 81

Query: 76  Q----AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
                   +E+        ++   Y  D+  C++C LC  AC  DAI    +FE A   R
Sbjct: 82  DTIKIMAHMETNEETGRKKKKLDDYQYDLGDCMFCQLCVNACNFDAIEFTNDFEHAVFDR 141

Query: 132 QELYYDKERLLNNG 145
            +L    ++ + +G
Sbjct: 142 SKLVLHLDKEVYDG 155


>gi|118576848|ref|YP_876591.1| NADH-ubiquinone oxidoreductase, subunit I [Cenarchaeum symbiosum A]
 gi|118195369|gb|ABK78287.1| NADH-ubiquinone oxidoreductase, subunit I [Cenarchaeum symbiosum A]
          Length = 166

 Score = 94.8 bits (234), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 11/139 (7%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGST--------SPRFRGEHALRRYPN-GEERCI 64
              + A    +++    + T+ YP EK                G   L+       + C 
Sbjct: 6   SGIIKALNSGIKHLAVKRFTLRYPEEKLKFVGDGYQFDPTTGVGIAGLKGRHMLFHDHCT 65

Query: 65  ACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            C+LC   C   A+AI++   P      ++ +   ID  KC++CGLC +ACP  A+    
Sbjct: 66  GCQLCAIACEGIAEAISMVKVPETWKQNKKAIMPQIDYGKCVFCGLCVDACPFYALYMTN 125

Query: 123 NFEFATETRQELYYDKERL 141
           ++E ++ T++ L Y   +L
Sbjct: 126 DYELSSYTKEALIYTPAQL 144


>gi|313156890|gb|EFR56328.1| 4Fe-4S binding domain protein [Alistipes sp. HGB5]
          Length = 146

 Score = 94.8 bits (234), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 42/145 (28%), Positives = 63/145 (43%), Gaps = 8/145 (5%)

Query: 4   FRCNVSFLF--LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFR--GEHALRRYPNG 59
            +  +   F  L   +    +  R FF  K T  YP  + +     R  GE  +     G
Sbjct: 1   MKSYIKGFFHGLGSLLTGLKVTGREFFTPKVTEQYPENRATLRMFDRFCGELTMPHDAEG 60

Query: 60  EERCIACKLCEAICPAQAIT----IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
             +CIAC LC++ CP   I     + + P      +R V Y+ D+  C++C LC  ACP 
Sbjct: 61  RNKCIACGLCQSACPNGTIRITTEMVADPETGKSRKRLVLYEYDLGACMFCRLCVNACPT 120

Query: 116 DAIVEGPNFEFATETRQELYYDKER 140
            AI    +FE A  TR++L     +
Sbjct: 121 GAIRFSTDFEHAVYTREKLVKTLNK 145


>gi|283795022|ref|YP_003359413.1| NADH dehydrogenase 18 kDa subunit [Olea europaea]
 gi|281428741|gb|ADA69980.1| NADH dehydrogenase 18 kDa subunit [Olea europaea]
          Length = 168

 Score = 94.8 bits (234), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/123 (31%), Positives = 55/123 (44%), Gaps = 6/123 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 19  IGQGFMITLSHVNRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 73

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP-VDAIVEGPNFEFATETRQEL 134
               ++         +R + Y ID   CI+CG C E CP          +E +T  R EL
Sbjct: 74  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPNKIVYQMTEEYELSTYNRHEL 133

Query: 135 YYD 137
            Y+
Sbjct: 134 NYN 136


>gi|292559560|ref|YP_003540987.1| NADH-plastoquinone oxidoreductase subunit I [Phoenix dactylifera]
 gi|156598105|gb|ABU85318.1| NADH-plastoquinone oxidoreductase subunit I [Elaeis oleifera]
 gi|290790968|gb|ADD63223.1| NADH-plastoquinone oxidoreductase subunit I [Phoenix dactylifera]
 gi|294620633|gb|ADF28202.1| NADH-plastoquinone oxidoreductase subunit I [Phoenix dactylifera]
          Length = 180

 Score = 94.8 bits (234), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFVITLSHTNRLPITIQYPYEKSITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         ++ + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWRFERDIKKKQLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTSDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|320529344|ref|ZP_08030432.1| 4Fe-4S binding domain protein [Selenomonas artemidis F0399]
 gi|320138310|gb|EFW30204.1| 4Fe-4S binding domain protein [Selenomonas artemidis F0399]
          Length = 228

 Score = 94.8 bits (234), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 5/127 (3%)

Query: 11  LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70
           +F K  +    +  ++ +  K T  YP EK   +  FRG +           CI C +C 
Sbjct: 1   MFGKGLLTGMSVTWKHLWGKKETFCYPEEKLPMTENFRGGN----LAMDWRVCIGCSMCA 56

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
             CP +A+ +          R    Y     +C+YC LC E CPV  +V   ++  +T +
Sbjct: 57  NACPNKALDLTIVQDAK-KKRHMQYYIHKSGRCLYCNLCVEVCPVKTLVWDKDYAISTWS 115

Query: 131 RQELYYD 137
           ++ + +D
Sbjct: 116 KETMTHD 122


>gi|168188278|gb|ACA14528.1| NADH dehydrogenase subunit I [Felicia heterophylla]
          Length = 166

 Score = 94.4 bits (233), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   T+ YP++K  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFIITLSHANRLPVTVQYPYKKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  NLPVVDWKLETDIKKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEKYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|295136963|ref|YP_003587797.1| NADH dehydrogenase subunit I [Lathyrus sativus]
 gi|293338685|gb|ADE43657.1| NADH dehydrogenase subunit I [Lathyrus sativus]
          Length = 166

 Score = 94.4 bits (233), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFMIILSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKMETDIRKKRLLNYSIDFGICIFCGNCIEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|258592364|emb|CBE68673.1| putative 4Fe-4S ferredoxin iron-sulfur binding domain protein
           precursor [NC10 bacterium 'Dutch sediment']
          Length = 176

 Score = 94.4 bits (233), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 40/131 (30%), Positives = 59/131 (45%), Gaps = 4/131 (3%)

Query: 15  EFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPN-GEERCIACKLCEAIC 73
             + +  + LRY F    T+ YP E+     R    H LR     G+ +C AC+ C  IC
Sbjct: 14  SILRSMKVTLRYLFTRAITVQYPDEQRPQPLRALNRHVLRIDETTGQLKCTACEACARIC 73

Query: 74  PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE-GPNFEFATETRQ 132
           P + I +    +  +  R    + ID   C+YC LC E CP DAI       E +++ R 
Sbjct: 74  PTRCIELTGTGKGKN--RHPSAFTIDHNLCMYCNLCVEVCPFDAITMWTRIGELSSDARS 131

Query: 133 ELYYDKERLLN 143
            L +D + L  
Sbjct: 132 GLVFDLKALTA 142


>gi|238007148|gb|ACR34609.1| unknown [Zea mays]
          Length = 64

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 49/64 (76%), Positives = 55/64 (85%)

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
           M KCIYCG CQEACPVDAIVEGPNFEFATET +EL YDKE+LL NGDRWE+EI  N+ ++
Sbjct: 1   MTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSE 60

Query: 160 SPYR 163
           S YR
Sbjct: 61  SLYR 64


>gi|94265856|ref|ZP_01289586.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
 gi|93453592|gb|EAT03988.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
          Length = 148

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 2/126 (1%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE--ERCIACKLCEA 71
           K  V    +  RY  +   T+ YP +    +PR+RG   L      E   +CIAC +C+ 
Sbjct: 13  KSLVVGLGITFRYMIQPVVTLQYPRQTVKMAPRYRGHIDLIFDAEAESGNKCIACGMCQR 72

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
            CP+  IT++S        +    Y +D  KC  CGLC E+CP DA+     +  A    
Sbjct: 73  NCPSDCITLKSEKPEGAKKKVLTGYQLDFTKCSLCGLCVESCPTDALEFSKEYNLAGLKA 132

Query: 132 QELYYD 137
           ++  +D
Sbjct: 133 EDYVFD 138


>gi|289829692|ref|ZP_06547233.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
          Length = 132

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 42/94 (44%), Positives = 56/94 (59%), Gaps = 1/94 (1%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            L R P+GEERC+AC LC   CP   I+++      DG      + I+  +CI+CGLC+E
Sbjct: 1   MLTRDPDGEERCVACNLCAVACPVGCISLQKAE-TKDGRWYPEFFRINFSRCIFCGLCEE 59

Query: 112 ACPVDAIVEGPNFEFATETRQELYYDKERLLNNG 145
           ACP  AI   P+FE     RQ+L Y+KE LL +G
Sbjct: 60  ACPTTAIQLTPDFELGEYKRQDLVYEKEDLLISG 93


>gi|295137002|ref|YP_003587549.1| NADH dehydrogenase subunit I [Pisum sativum]
 gi|293338574|gb|ADE43547.1| NADH dehydrogenase subunit I [Pisum sativum]
          Length = 166

 Score = 94.0 bits (232), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFMIILSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKMETDIRKKRLLNYSIDFGICIFCGNCIEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|21954438|emb|CAD12667.1| electron-transferring-flavoprotein dehydrogenase subunit [Hortaea
           werneckii]
          Length = 64

 Score = 94.0 bits (232), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 44/64 (68%), Positives = 52/64 (81%)

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
           M KCIYCG CQE+CPVDAIVEGPN E+ATETR+EL Y+KE+LL NGD+WE E+      D
Sbjct: 1   MTKCIYCGFCQESCPVDAIVEGPNAEYATETREELLYNKEKLLANGDKWEPELAAIARAD 60

Query: 160 SPYR 163
           +PYR
Sbjct: 61  APYR 64


>gi|309322199|ref|YP_003934114.1| NADH-plastoquinone oxidoreductase subunit I [Geranium palmatum]
 gi|197131386|gb|ACH47211.1| NADH-plastoquinone oxidoreductase subunit I [Geranium palmatum]
 gi|300069292|gb|ADJ66413.1| NADH-plastoquinone oxidoreductase subunit I [Geranium palmatum]
          Length = 173

 Score = 94.0 bits (232), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 56/119 (47%), Gaps = 5/119 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFMITLSHANRFPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134
           +   ++         +R   Y ID   CI+CG C E CP + +     +E +T  R EL
Sbjct: 77  ELPVVDWKFETDIRKKRLFNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHEL 135


>gi|219674000|ref|YP_002456484.1| NADH-plastoquinone oxidoreductase subunit I [Trifolium
           subterraneum]
 gi|193788969|gb|ACF20565.1| NADH-plastoquinone oxidoreductase subunit I [Trifolium
           subterraneum]
          Length = 162

 Score = 94.0 bits (232), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFMIILSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCIEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|284164399|ref|YP_003402678.1| NADH-quinone oxidoreductase, chain I [Haloterrigena turkmenica DSM
           5511]
 gi|284014054|gb|ADB60005.1| NADH-quinone oxidoreductase, chain I [Haloterrigena turkmenica DSM
           5511]
          Length = 153

 Score = 94.0 bits (232), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 44/130 (33%), Positives = 71/130 (54%), Gaps = 11/130 (8%)

Query: 13  LKEFVGAFFLCLRYFF-KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71
           +   + +    +++    +  T+ YP      SPRFRG H        +ERCI C+ CE 
Sbjct: 1   MIGILKSMATTMKHALDGSTFTVEYPETAPDVSPRFRGVHKF-----SQERCIWCRQCEN 55

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           +CP   I I +  +     R+  +Y++ + +C+YC LC+E CPVDAI+   NFEF  +T+
Sbjct: 56  VCPNDTIQIVTNDQ-----RQGEQYNLHIGQCVYCRLCEEVCPVDAILLTQNFEFTADTK 110

Query: 132 QELYYDKERL 141
            +  Y+KE+L
Sbjct: 111 HDFVYNKEQL 120


>gi|309322279|ref|YP_003934357.1| NADH-plastoquinone oxidoreductase subunit I [Monsonia speciosa]
 gi|197131388|gb|ACH47212.1| NADH-plastoquinone oxidoreductase subunit I [Monsonia speciosa]
 gi|300069372|gb|ADJ66492.1| NADH-plastoquinone oxidoreductase subunit I [Monsonia speciosa]
          Length = 175

 Score = 94.0 bits (232), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +  + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSLMITLLHTNRFPITIQYPYEKFITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +  + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPLVDWKFESDIRKKGLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|197131384|gb|ACH47210.1| NADH-plastoquinone oxidoreductase subunit I [Geranium macrorrhizum]
          Length = 173

 Score = 93.6 bits (231), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 56/119 (47%), Gaps = 5/119 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFMITLSHANRFPVTIQYPYEKLITSGRFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134
           +   ++         +R   Y ID   CI+CG C E CP + +     +E +T  R EL
Sbjct: 77  ELPVVDWKFETDIRKKRLFNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHEL 135


>gi|325857154|ref|ZP_08172444.1| 4Fe-4S binding domain protein [Prevotella denticola CRIS 18C-A]
 gi|327313382|ref|YP_004328819.1| 4Fe-4S binding domain-containing protein [Prevotella denticola
           F0289]
 gi|325483217|gb|EGC86195.1| 4Fe-4S binding domain protein [Prevotella denticola CRIS 18C-A]
 gi|326944442|gb|AEA20327.1| 4Fe-4S binding domain protein [Prevotella denticola F0289]
          Length = 178

 Score = 93.6 bits (231), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 7/135 (5%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEK---GSTSPRFRGEHALRRYPNGEERCIACKLC 69
           LK       + ++ +F  K+T  YP  +      + R RG    +R   G  +C +C +C
Sbjct: 16  LKTLATGMKVTMKEYFTPKSTEQYPENRKTTLHVAKRHRGRLVFKRDEEGNYKCTSCTMC 75

Query: 70  EAICPAQ----AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           E  CP      A  + + P      ++ + Y  D+  C++C LC  AC  DAI    +FE
Sbjct: 76  EKACPNGTIKIASEMVTNPETGRKKKQLLDYQYDLGDCMFCELCVNACNFDAIEFTNDFE 135

Query: 126 FATETRQELYYDKER 140
            A   R +L    ++
Sbjct: 136 NAVFDRSKLVLHLDK 150


>gi|325269274|ref|ZP_08135892.1| NADH-quinone oxidoreductase subunit I [Prevotella multiformis DSM
           16608]
 gi|324988401|gb|EGC20366.1| NADH-quinone oxidoreductase subunit I [Prevotella multiformis DSM
           16608]
          Length = 178

 Score = 93.6 bits (231), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 7/135 (5%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEK---GSTSPRFRGEHALRRYPNGEERCIACKLC 69
           LK       + ++ +F  K+T  YP  +      + R RG    +R   G  +C +C +C
Sbjct: 16  LKTLATGMKVTMKEYFTPKSTEQYPENRKTTLHVAQRHRGRLVFKRDEEGNYKCTSCTMC 75

Query: 70  EAICPAQ----AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           E  CP      A  + + P      ++ + Y  D+  C++C LC  AC  DAI    +FE
Sbjct: 76  EKACPNGTIKIASEMVTNPETGRKKKQLLDYQYDLGDCMFCELCVNACNFDAIEFTNDFE 135

Query: 126 FATETRQELYYDKER 140
            +   R +L    ++
Sbjct: 136 NSVFDRSKLVLHLDK 150


>gi|197294161|ref|YP_002149781.1| NADH-plastoquinone oxidoreductase subunit I [Cicer arietinum]
 gi|197089849|gb|ACH41119.1| NADH-plastoquinone oxidoreductase subunit I [Cicer arietinum]
          Length = 162

 Score = 93.6 bits (231), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  T  RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFVIILSHANRLPVTIQYPYEKLITPERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCIEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|118475180|ref|YP_891369.1| NADH-ubiquinone oxidoreductase subunit 8 [Campylobacter fetus
           subsp. fetus 82-40]
 gi|261886061|ref|ZP_06010100.1| NADH-ubiquinone oxidoreductase subunit 8 [Campylobacter fetus
           subsp. venerealis str. Azul-94]
 gi|156633515|sp|A0RMD6|NUOI_CAMFF RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|118414406|gb|ABK82826.1| NADH-ubiquinone oxidoreductase subunit 8 [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 165

 Score = 93.6 bits (231), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 8/148 (5%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTT------INYPFEKG-STSPRFRGEHALR 54
           R     +  ++L           R+FF+          + YP +K    + R+RG H L 
Sbjct: 10  RKKIPFLQRIYLPFIFAGMARTFRHFFRNLKDSSNIDFLEYPEQKPTDITNRYRGLHRLT 69

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           +   G+ +C+AC +C   CPA  I I +        +   ++ ID+++C++CGLC EACP
Sbjct: 70  KNEKGDLKCVACDMCATACPANCIFITATEIEGSKEKAPSKFTIDLLECVFCGLCVEACP 129

Query: 115 VDAIVE-GPNFEFATETRQELYYDKERL 141
            DAI      F     TR+    D + L
Sbjct: 130 KDAIRMDTGIFTKVGNTRESFLADIKTL 157


>gi|55378233|ref|YP_136083.1| NADH dehydrogenase/oxidoreductase-like protein [Haloarcula
           marismortui ATCC 43049]
 gi|55230958|gb|AAV46377.1| NADH dehydrogenase/oxidoreductase-like protein [Haloarcula
           marismortui ATCC 43049]
          Length = 153

 Score = 93.6 bits (231), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 46/130 (35%), Positives = 67/130 (51%), Gaps = 11/130 (8%)

Query: 13  LKEFVGAFFLCLRYFF-KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71
           +   + +    +++       T+ YP      SPRFRG H        +ERCI C+ CE 
Sbjct: 1   MIGILKSMATTMKHALDGETFTVEYPDVAPEVSPRFRGVH-----KWSQERCIWCRQCEN 55

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           +CP   I I    +     R   +Y++ + +CIYC LC+E CP DAI+   NFEF  +T+
Sbjct: 56  VCPNNTIQIVMDEQ-----RNGEQYNLHIGQCIYCRLCEEVCPTDAILLTQNFEFTADTK 110

Query: 132 QELYYDKERL 141
            E  YDKE+L
Sbjct: 111 DEFAYDKEQL 120


>gi|313895779|ref|ZP_07829333.1| 4Fe-4S binding domain protein [Selenomonas sp. oral taxon 137 str.
           F0430]
 gi|312975204|gb|EFR40665.1| 4Fe-4S binding domain protein [Selenomonas sp. oral taxon 137 str.
           F0430]
          Length = 218

 Score = 93.6 bits (231), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 5/127 (3%)

Query: 11  LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70
           +F K  +    +  ++ +  K T  YP EK   +  FRG +           CI C +C 
Sbjct: 1   MFGKGLLTGMSVTWKHLWGKKETFCYPEEKLPMTENFRGGN----LAMDWRVCIGCSMCA 56

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
             CP +A+ +          R    Y     +C+YC LC E CPV  +V   ++  +T +
Sbjct: 57  NACPNKALDLTIVQDAK-KKRHMQYYIHKSGRCLYCNLCVEVCPVKTLVWDKDYAISTWS 115

Query: 131 RQELYYD 137
           ++ + +D
Sbjct: 116 KETMTHD 122


>gi|78043690|ref|YP_360252.1| proton-translocating NADH-quinone oxidoreductase subunit I
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|115502524|sp|Q3AC82|NUOI_CARHZ RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|77995805|gb|ABB14704.1| proton-translocating NADH-quinone oxidoreductase, I subunit
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 140

 Score = 93.6 bits (231), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 6/124 (4%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
              +    +  +  +K   T+ YP  K    PRF G   L       E+CIAC LC+  C
Sbjct: 7   TGLLKGLAITFKELWKKPVTLEYPEHKEKLPPRFHGSFTLH-----SEKCIACGLCQQAC 61

Query: 74  PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
           P + I + S     +  R+   Y+++M  C++CGLC EACP +A+V    +E A    ++
Sbjct: 62  PNKVIKVGSIKD-ENNKRKLASYEMEMKYCLFCGLCVEACPTNALVFNQEYELAKYRIED 120

Query: 134 LYYD 137
           +   
Sbjct: 121 IKLT 124


>gi|320352995|ref|YP_004194334.1| NADH dehydrogenase subunit I [Desulfobulbus propionicus DSM 2032]
 gi|320121497|gb|ADW17043.1| NADH dehydrogenase subunit I [Desulfobulbus propionicus DSM 2032]
          Length = 151

 Score = 93.6 bits (231), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 1/122 (0%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPN-GEERCIACKLCEAI 72
           K  +    +  R FFK   T  YP+E  + +P FRG   L      G   C+ C +C+  
Sbjct: 13  KSLLTGLAITAREFFKPVVTEQYPWEVPTMTPLFRGHIELIGNEETGAPNCVVCGMCQRA 72

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           CP+Q I+++         +   RY +D  KC  CG C E+C  +A+     +   +  ++
Sbjct: 73  CPSQCISLDGKKNESGKGKVLTRYVLDFTKCSLCGSCVESCNFNALRFSKEYNLVSFDKK 132

Query: 133 EL 134
           + 
Sbjct: 133 DF 134


>gi|153004151|ref|YP_001378476.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Anaeromyxobacter sp. Fw109-5]
 gi|152027724|gb|ABS25492.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. Fw109-5]
          Length = 284

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 45/124 (36%), Gaps = 1/124 (0%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
           K F     + L +  +   T+ YP                         C  C+ CE  C
Sbjct: 17  KSFWQGMSITLSHLLRRPITVQYPDRTPMPVRDMLPPRYRGFLEVDAAICTGCQACERAC 76

Query: 74  PAQAITIESGPRC-HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           P   I I       +   R   ++DID  KC++CGLC E CP  +I     FE +    +
Sbjct: 77  PINCIQITLEKDPTNPKQRVVTQFDIDEAKCMFCGLCVEPCPTGSIQHTREFEGSQRNIR 136

Query: 133 ELYY 136
            L +
Sbjct: 137 NLTF 140


>gi|153012163|ref|YP_001381678.1| NADH-plastoquinone oxidoreductase subunit I [Medicago truncatula]
 gi|124360818|gb|ABN08790.1| Alpha-helical ferredoxin [Medicago truncatula]
          Length = 161

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFIIILSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E +T  R EL 
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCIEYCPTNCLSMTEEYELSTYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|110667600|ref|YP_657411.1| NADH dehydrogenase-like complex, subunit I [Haloquadratum walsbyi
           DSM 16790]
 gi|109625347|emb|CAJ51769.1| NADH dehydrogenase-like complex, subunit I [Haloquadratum walsbyi
           DSM 16790]
          Length = 153

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 45/130 (34%), Positives = 67/130 (51%), Gaps = 11/130 (8%)

Query: 13  LKEFVGAFFLCLRYFF-KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71
           +   + +    +++       T+ YP      SPRFRG H        +ERCI C+ CE 
Sbjct: 1   MIGLLKSMATTMKHALDGETFTVEYPDVAPEVSPRFRGVHKF-----SQERCIWCRQCEK 55

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           +CP   I I    +     R   +Y++ + +CIYC LC+E CPVDAI+   NFEF  +T+
Sbjct: 56  VCPNDTIQIVQDDK-----RNGEQYNLHIGQCIYCRLCEEVCPVDAILLTQNFEFTADTK 110

Query: 132 QELYYDKERL 141
            E  Y+ E+L
Sbjct: 111 DEFVYNMEQL 120


>gi|260592328|ref|ZP_05857786.1| NADH-ubiquinone oxidoreductase, NQO9 subunit [Prevotella veroralis
           F0319]
 gi|260535715|gb|EEX18332.1| NADH-ubiquinone oxidoreductase, NQO9 subunit [Prevotella veroralis
           F0319]
          Length = 178

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 43/154 (27%), Positives = 66/154 (42%), Gaps = 17/154 (11%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEK---GSTSPRFRGEHALRRYPNGEERCIACKLC 69
           LK       + ++ +F  K+T  YP  +      + R RG    +R  N   +C AC +C
Sbjct: 16  LKTLATGMKVTMKEYFTPKSTEQYPENRKTTLHVAKRHRGRLVFKRDENENYKCTACTMC 75

Query: 70  EAICPAQ----AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           E  CP      A  + + P      ++ + Y  D+  C++C LC  AC  DAI    +FE
Sbjct: 76  EKACPNGTIKIASEMVTNPETGRKKKQLLDYQYDLGDCMFCELCVNACNFDAIEFTNDFE 135

Query: 126 FATETRQELY--YDKE--------RLLNNGDRWE 149
            A   R +L    DKE        +L+  G  W+
Sbjct: 136 NAVFDRSKLVLHLDKEIYKGGSLPKLIEGGADWK 169


>gi|282860266|ref|ZP_06269336.1| 4Fe-4S binding domain protein [Prevotella bivia JCVIHMP010]
 gi|282586940|gb|EFB92175.1| 4Fe-4S binding domain protein [Prevotella bivia JCVIHMP010]
          Length = 177

 Score = 93.2 bits (230), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 16/153 (10%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEK---GSTSPRFRGEHALRRYPNGEERCIACKLC 69
           LK       + ++ +F  K+T  YP  +      S R RG     R  NG  +C +C +C
Sbjct: 16  LKTLATGLKVTMKEYFTPKSTEQYPENRKTTLHVSDRHRGRLVFLRDENGNHKCTSCTMC 75

Query: 70  EAICPAQAITIESGPRCHDGTRRTVR---YDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
           E  CP   I I S    +   ++      Y  D+  C++C LC  AC   AI    +FE 
Sbjct: 76  EKACPNGTIRILSQMVTNAEGKKKKELVDYQYDLGDCMFCSLCTNACNFGAIEFTNDFEN 135

Query: 127 ATETRQELYYDKER----------LLNNGDRWE 149
           A   R +L    ++          L+  G  WE
Sbjct: 136 AVFDRSKLVLHLDKEVYAGGSLPNLIEGGAAWE 168


>gi|315608357|ref|ZP_07883346.1| NADH-quinone oxidoreductase subunit I [Prevotella buccae ATCC
           33574]
 gi|315249987|gb|EFU29987.1| NADH-quinone oxidoreductase subunit I [Prevotella buccae ATCC
           33574]
          Length = 177

 Score = 92.9 bits (229), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 41/135 (30%), Positives = 59/135 (43%), Gaps = 7/135 (5%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEK---GSTSPRFRGEHALRRYPNGEERCIACKLC 69
           +K         LR +F  K+T  YP  +      SPR RG    +R  N   RC+AC +C
Sbjct: 15  MKTLAVGMKTTLREYFTPKSTEQYPENRKTTLHLSPRHRGRLVFKRDENENHRCVACTMC 74

Query: 70  EAICPAQA----ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           E  CP         + + P      R+ + Y  D+  C++C LC  AC  DAI    +FE
Sbjct: 75  EKACPNGTIVLTHEMVADPETGKKKRQLIDYQYDLGDCMFCQLCVNACNFDAIEFTNDFE 134

Query: 126 FATETRQELYYDKER 140
            A   R +L    ++
Sbjct: 135 QAVFDRSKLVLHLDK 149


>gi|289582897|ref|YP_003481363.1| NADH-quinone oxidoreductase, chain I [Natrialba magadii ATCC 43099]
 gi|289532450|gb|ADD06801.1| NADH-quinone oxidoreductase, chain I [Natrialba magadii ATCC 43099]
          Length = 153

 Score = 92.9 bits (229), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/130 (35%), Positives = 70/130 (53%), Gaps = 11/130 (8%)

Query: 13  LKEFVGAFFLCLRYFF-KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71
           +   + +    +++    +  T+ YP      SPRFRG H        +ERCI C+ CE 
Sbjct: 1   MIGVLKSMATTMKHALDGSTFTVEYPTAAPDVSPRFRGVHKF-----SQERCIWCRQCEN 55

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           +CP   I I    +     R   +Y++ + +CIYC LC+E CPVDAI+   NFEF  +T+
Sbjct: 56  VCPNDTIQIVMDDK-----RNGEQYNLHIGQCIYCRLCEEVCPVDAILLTQNFEFTGDTK 110

Query: 132 QELYYDKERL 141
            +L Y+KE+L
Sbjct: 111 HDLVYNKEQL 120


>gi|323702659|ref|ZP_08114320.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfotomaculum nigrificans DSM 574]
 gi|323532322|gb|EGB22200.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfotomaculum nigrificans DSM 574]
          Length = 158

 Score = 92.9 bits (229), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 7/123 (5%)

Query: 11  LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70
           +F +  +    + L +FF+   T+ YP ++     RF G           ++CIAC  C 
Sbjct: 1   MFGEGLLKGLKITLGWFFRKPVTVQYPEQRLPIPDRFFGRPEF-----DYDKCIACNQCV 55

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
             CP + I + +     D  +    YD D   C++CG+CQEACP DAI    +FE     
Sbjct: 56  NACPNKVIKLTTE--TVDKKKVVTGYDFDQQYCMFCGMCQEACPKDAIRFTKDFELTKYH 113

Query: 131 RQE 133
           R +
Sbjct: 114 RPD 116


>gi|332826697|gb|EGJ99519.1| hypothetical protein HMPREF9455_04115 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 236

 Score = 92.9 bits (229), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 46/168 (27%), Positives = 65/168 (38%), Gaps = 15/168 (8%)

Query: 1   MRIFRCNVSFLF--LKEFVGAFFLCLRYFFKAKTTINYPFEKGS--TSPRFRGEHALRRY 56
           M       S LF  +K  +    +     +  K T  YP  + +     RFRGE  +   
Sbjct: 1   MSSVSEYFSGLFGGIKSLLTGMRVTWGELWTKKITEQYPENRATLVIPDRFRGELIMPHD 60

Query: 57  PNGEERCIACKLCEAICPAQAITIES---GPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
            N E  C AC +C+  CP   I + S           +   RY  D+  C +C LC   C
Sbjct: 61  ENNEHACTACGICQMNCPNGTIQVISKSIETEDGKKKKIIDRYIYDLGMCTFCNLCVITC 120

Query: 114 PVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161
           P DAIV    FE +  TR +L    ++L       E   +R    + P
Sbjct: 121 PSDAIVFANTFENSLFTRSKLI---QQL-----NHEGSKLREKKKEKP 160


>gi|261416519|ref|YP_003250202.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261372975|gb|ACX75720.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 188

 Score = 92.9 bits (229), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/153 (30%), Positives = 75/153 (49%), Gaps = 12/153 (7%)

Query: 1   MRIFRCN----VSFLFLKEFVGAFFLCLRY----FFK--AKTTINYPFEKGSTSPRFRGE 50
           MR+ +      +  L++ E +   +  L++     F+     TI+YP  +      +R +
Sbjct: 1   MRVIKQKPMTVIERLYIFEAIRGLWTTLKHAARGLFRYEELPTISYPEGQPEIRNTYRAK 60

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGP-RCHDGTRRTVRYDIDMIKCIYCGLC 109
           H L   P+G  RC+AC +C A CPA  I IE+         +R +R+DID + C++CGLC
Sbjct: 61  HRLMLRPDGTPRCVACGMCAAACPAHCIFIEATQSDDPRIEKRVMRFDIDHLTCVFCGLC 120

Query: 110 QEACPVDAIVE-GPNFEFATETRQELYYDKERL 141
            EACPVDA+        F   +R++       L
Sbjct: 121 AEACPVDALRMDTKQIIFEHRSREDFVAHLYDL 153


>gi|147669455|ref|YP_001214273.1| NADH-quinone oxidoreductase, chain I [Dehalococcoides sp. BAV1]
 gi|289432722|ref|YP_003462595.1| NADH-quinone oxidoreductase, chain I [Dehalococcoides sp. GT]
 gi|146270403|gb|ABQ17395.1| NADH-quinone oxidoreductase, chain I [Dehalococcoides sp. BAV1]
 gi|288946442|gb|ADC74139.1| NADH-quinone oxidoreductase, chain I [Dehalococcoides sp. GT]
          Length = 183

 Score = 92.9 bits (229), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 40/115 (34%), Positives = 55/115 (47%), Gaps = 6/115 (5%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +    L  ++ F+   T+ YP EK + S R RG   +      +E CIAC  C   CP 
Sbjct: 11  ILKGMRLTFKHLFRPWITVQYPEEKLAMSKRIRGNQVIWV----KETCIACLACARACPV 66

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DAIVEGPNFEFATE 129
           +AI +E   R  D   +     ID   CI+CGLC E+CP  +AI  G  +E  T 
Sbjct: 67  KAINMEVS-RGEDRKLKVDHMSIDFGLCIFCGLCVESCPTKNAIYMGCGYETTTY 120


>gi|322383093|ref|ZP_08056920.1| hypothetical protein PL1_1942 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321152755|gb|EFX45381.1| hypothetical protein PL1_1942 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 137

 Score = 92.5 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 41/120 (34%), Positives = 52/120 (43%), Gaps = 7/120 (5%)

Query: 27  FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC 86
               K T  YP        RFRG            +CI C +C  +CP   IT+   P  
Sbjct: 1   MVSKKVTYAYPDAPLQMPDRFRGIQHFEPD-----KCIVCNMCAKVCPTDCITLTGKPNP 55

Query: 87  --HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNN 144
                 +    YDI+   CI C  C E CP +AIV   NFE +T +R EL+ + E L NN
Sbjct: 56  DPEKKGKVIDTYDINFEICILCDFCTEVCPTEAIVMTGNFELSTYSRDELFKNMEWLANN 115


>gi|150017832|ref|YP_001310086.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Clostridium beijerinckii NCIMB 8052]
 gi|149904297|gb|ABR35130.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Clostridium
           beijerinckii NCIMB 8052]
          Length = 129

 Score = 92.5 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 6/123 (4%)

Query: 11  LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70
           +F K  +    + L + F+   T  YP E      R R    L       E+CI+C +C 
Sbjct: 1   MFGKGLLNGLRVTLGHLFEKNITQQYPEEHPKLPLRSRCSFRL-----DSEKCISCSICA 55

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
             CP + I +ES     +  +   +Y++ +  C++CGLC E+CP  A+    +FE +  +
Sbjct: 56  LSCPNRVINVESYKD-ENNKKHLTKYEMQLEYCLFCGLCVESCPTKALQVTSDFELSAYS 114

Query: 131 RQE 133
           R E
Sbjct: 115 RAE 117


>gi|281419769|ref|ZP_06250768.1| NADH-ubiquinone oxidoreductase, NQO9 subunit [Prevotella copri DSM
           18205]
 gi|281406145|gb|EFB36825.1| NADH-ubiquinone oxidoreductase, NQO9 subunit [Prevotella copri DSM
           18205]
          Length = 176

 Score = 92.5 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 40/135 (29%), Positives = 56/135 (41%), Gaps = 7/135 (5%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEK---GSTSPRFRGEHALRRYPNGEERCIACKLC 69
           LK         ++ +F  K+T  YP  +      SPRFRG     R  N   +C+ C LC
Sbjct: 14  LKTLAIGMKTTMKEYFTPKSTEQYPENRKTTLHVSPRFRGRLVFVRDENEAYKCVGCTLC 73

Query: 70  EAICPAQ----AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           E  CP         +   P      R+ V Y  D+  C++C LC  AC   AI    +FE
Sbjct: 74  EKSCPNDTIKIVTEMVEDPETGKKKRKLVDYQYDLGDCMFCELCVNACNFGAIKFVNDFE 133

Query: 126 FATETRQELYYDKER 140
            A   R +L    ++
Sbjct: 134 NAVFDRNKLVMHLDK 148


>gi|308746031|ref|YP_003934613.1| NADH-plastoquinone oxidoreductase subunit I [Cheilanthes
           lindheimeri]
 gi|302375464|gb|ADL29838.1| NADH-plastoquinone oxidoreductase subunit I [Cheilanthes
           lindheimeri]
          Length = 175

 Score = 92.5 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 5/119 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 +   +  +   T+ YP+EK   S RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGSAVTSDHSNRLPITVQYPYEKNLPSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134
               ++         ++   Y ID   CI+CG C E CP + +     FE ++  R EL
Sbjct: 77  NLPVVDWIFMKEVKKKKLRSYTIDFGVCIFCGNCVEYCPTNCLSMTEEFELSSYDRHEL 135


>gi|121534367|ref|ZP_01666191.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
 gi|121307137|gb|EAX48055.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
          Length = 149

 Score = 92.5 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 44/127 (34%), Positives = 55/127 (43%), Gaps = 5/127 (3%)

Query: 11  LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70
           +F K  +    + L+ FF    T+ YP EK   + RFRG            RCIAC LC 
Sbjct: 1   MFGKGLLTGMLITLKRFFGRPNTVQYPDEKLPMTARFRGGA----LTLDINRCIACGLCA 56

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
             CP QAI   +        +    Y      C+YC LC EACP  A+    N+E A   
Sbjct: 57  MACPNQAI-GLATTVDESKKKSLTSYIHHTGLCLYCNLCLEACPAKALTWDQNYEAACYL 115

Query: 131 RQELYYD 137
           RQ L  D
Sbjct: 116 RQNLDVD 122


>gi|224178048|ref|YP_002600966.1| 18 kDa subunit of NADH-plastoquinone oxidoreductase [Pyramimonas
           parkeae]
 gi|215882715|gb|ACJ71088.1| 18 kDa subunit of NADH-plastoquinone oxidoreductase [Pyramimonas
           parkeae]
          Length = 149

 Score = 92.5 bits (228), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F +   +  +   TI+YP+ +   S RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFRVTFDHMNRKPITIHYPYGEMVPSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++   +     ++   Y ID   CI+CG C E CP + +     +  +   R EL 
Sbjct: 77  NLPVVDWEYKASMKKKQLKSYSIDFGVCIFCGNCVEYCPTNCLSMTEEYALSVYDRHELN 136

Query: 136 YD 137
           +D
Sbjct: 137 FD 138


>gi|30352087|ref|NP_848114.1| NADH dehydrogenase subunit I [Adiantum capillus-veneris]
          Length = 167

 Score = 92.1 bits (227), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 5/126 (3%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   T+ YP+EK   S RFRG            +CIAC++   +CP 
Sbjct: 22  IGQGFAVTLDHSNRLPITVQYPYEKKLPSERFRGRIHFEFD-----KCIACEVRVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         ++   Y ID   CI+CG C E CP + +     +E ++  R EL 
Sbjct: 77  NLPVVDWIFLKDVKKKKLKNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSSYNRHELN 136

Query: 136 YDKERL 141
           +D+  L
Sbjct: 137 FDQTAL 142


>gi|154756870|gb|ABS85186.1| NADH dehydrogenase subunit I [Hypericum perforatum]
          Length = 163

 Score = 92.1 bits (227), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +FF+ L +  +   T+ YP+EK     RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFFITLSHSNRLSVTLQYPYEKFILLDRFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R + Y ID   CI+CG C E CP + +     +E ++  R EL 
Sbjct: 77  DLPVVDWKWETLIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSSYDRHELN 136

Query: 136 YD 137
           Y+
Sbjct: 137 YN 138


>gi|161527789|ref|YP_001581615.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Nitrosopumilus maritimus SCM1]
 gi|160339090|gb|ABX12177.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Nitrosopumilus maritimus SCM1]
          Length = 165

 Score = 92.1 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 11/139 (7%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGST--------SPRFRGEHALRRYPN-GEERCI 64
              + A    +++    + T+ YP EK                G   L+       + C 
Sbjct: 5   TGIIRALNSGIKHIAIKRFTLRYPEEKLKFVGDGYQFDPSTGVGIAGLKGRHMLFHDHCT 64

Query: 65  ACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            C+LC   C   A+AI +   P      ++++   ID  KC++CGLC +ACP  A+    
Sbjct: 65  GCQLCSIACEGVAEAIAMVKVPEEQKQNKKSIMPQIDYGKCVFCGLCVDACPFYALYMTN 124

Query: 123 NFEFATETRQELYYDKERL 141
           ++E ++ T++ L Y   +L
Sbjct: 125 DYELSSFTKEGLIYTPAQL 143


>gi|323388071|gb|ADX60297.1| hypothetical protein [Furcellaria lumbricalis]
          Length = 65

 Score = 92.1 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 46/64 (71%), Positives = 53/64 (82%)

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
           M KCI+CG CQEACPVDAIVEGPN+E+ TET +EL Y+KE LL NGDRWESEI +NI  +
Sbjct: 2   MTKCIFCGACQEACPVDAIVEGPNYEYGTETHEELLYNKETLLENGDRWESEIAKNIENE 61

Query: 160 SPYR 163
           S YR
Sbjct: 62  SMYR 65


>gi|83589831|ref|YP_429840.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica ATCC
           39073]
 gi|83572745|gb|ABC19297.1| NADH dehydrogenase subunit I [Moorella thermoacetica ATCC 39073]
          Length = 134

 Score = 92.1 bits (227), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 9/132 (6%)

Query: 11  LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70
           +F +  +    +   + F    T  YP  + +  P   G   L       E+CIAC +C 
Sbjct: 1   MFGQGLLKGLSITWHFCFGKAVTEQYPERRPNLPPASHGSFRL-----EREKCIACGICA 55

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
             CP   IT+ES  R     R    Y + + +C++CGLC E+CP  A+   P+FE A   
Sbjct: 56  NACPNHVITVESE-RDEQKKRHLTGYRVKLGQCLFCGLCVESCPQGALHWQPDFELACYR 114

Query: 131 RQELYYDKERLL 142
            ++    ++ LL
Sbjct: 115 HED---TEQDLL 123


>gi|270308199|ref|YP_003330257.1| NADH:quinone oxidoreductase subunit 1 (chain I) [Dehalococcoides
           sp. VS]
 gi|270154091|gb|ACZ61929.1| NADH:quinone oxidoreductase subunit 1 (chain I) [Dehalococcoides
           sp. VS]
          Length = 183

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 39/115 (33%), Positives = 54/115 (46%), Gaps = 6/115 (5%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +    L  ++ F+   T  YP EK + S R RG   +      +E CIAC  C   CP 
Sbjct: 11  ILKGMRLTFKHLFRPWITAQYPEEKLTMSKRIRGTQVIWV----KETCIACLACARACPV 66

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DAIVEGPNFEFATE 129
           +AI +E   R  D   +     ID   C++CGLC E+CP  +AI  G  +E  T 
Sbjct: 67  KAINMEVS-RGEDRKLKVDHMSIDFGLCVFCGLCVESCPTKNAIYMGYGYETTTY 120


>gi|329957594|ref|ZP_08298069.1| 4Fe-4S binding domain protein [Bacteroides clarus YIT 12056]
 gi|328522471|gb|EGF49580.1| 4Fe-4S binding domain protein [Bacteroides clarus YIT 12056]
          Length = 167

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 43/144 (29%), Positives = 61/144 (42%), Gaps = 7/144 (4%)

Query: 1   MRIFRCNVSFLF--LKEFVGAFFLCLRYFFKAKTTINYPFEK--GSTSPRFRGEHALRRY 56
           M+     +  L   +   +      +  F + KTT  YP  +     S RFRG   +   
Sbjct: 1   MKDNNSYIGSLINGITSLLTGMKTTMTVFCRKKTTEQYPENRKTLKLSERFRGTLTMPHN 60

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV---RYDIDMIKCIYCGLCQEAC 113
              E  CIAC LC+  CP   I + S     +  ++     +Y+ D+  CI+C LC  AC
Sbjct: 61  ERNEHHCIACGLCQMACPNDTIKVTSETVETEDGKKKKILAKYEYDLGSCIFCQLCVNAC 120

Query: 114 PVDAIVEGPNFEFATETRQELYYD 137
           P DAI    NFE A   R +L   
Sbjct: 121 PHDAITFDQNFEHAVFDRSKLVLT 144


>gi|317130739|ref|YP_004097021.1| NADH-quinone oxidoreductase, chain I [Bacillus cellulosilyticus DSM
           2522]
 gi|315475687|gb|ADU32290.1| NADH-quinone oxidoreductase, chain I [Bacillus cellulosilyticus DSM
           2522]
          Length = 151

 Score = 91.7 bits (226), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 45/131 (34%), Positives = 60/131 (45%), Gaps = 7/131 (5%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +  F +   YF K K TI YP E+     RFRG H          +CI C LC   CP 
Sbjct: 4   LLKGFGVTFNYFRKKKITIQYPDEQVVMPERFRGIHRFFPD-----KCIVCNLCVTACPT 58

Query: 76  QAITIESGPRCHDGTRRTV-RYDIDMIKCIYCGLCQEACPVDAIVEGPNFE-FATETRQE 133
             IT+       +  ++ +  Y+ID   CI C  C E CP DAIV    ++  ++  R E
Sbjct: 59  DVITLTGKKSEENPKKKIIDTYNIDFQGCILCDFCTEVCPTDAIVMTARYDNLSSFNRSE 118

Query: 134 LYYDKERLLNN 144
            + D E L NN
Sbjct: 119 HFKDIEWLTNN 129


>gi|16082008|ref|NP_394425.1| NADH dehydrogenase subunit I [Thermoplasma acidophilum DSM 1728]
 gi|10640280|emb|CAC12094.1| NADH dehydrogenase, chain ndhI [Thermoplasma acidophilum]
          Length = 154

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 6/133 (4%)

Query: 9   SFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKL 68
             + L   +   +   ++ FK   T+ YP EK  T  RF+    L         C+ C L
Sbjct: 19  KRIPLIGSLQGMYTVFKHLFKKPITVQYPEEKAYTPARFKFRIFLSMDD-----CVGCTL 73

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
           CE +CP  +I +    R +   +R +   ++   C  C  C+E CP +AI      E A 
Sbjct: 74  CEQVCPNLSIRMIVVERNNPHNKRNLYPQVNFGTCTVCRNCEEICPTEAIYLTHELETA- 132

Query: 129 ETRQELYYDKERL 141
            TR   +Y  E L
Sbjct: 133 RTRNNFFYSPEEL 145


>gi|281424346|ref|ZP_06255259.1| NADH-ubiquinone oxidoreductase, NQO9 subunit [Prevotella oris
           F0302]
 gi|299140922|ref|ZP_07034060.1| NADH-ubiquinone oxidoreductase, NQO9 subunit (NQO9) [Prevotella
           oris C735]
 gi|281401615|gb|EFB32446.1| NADH-ubiquinone oxidoreductase, NQO9 subunit [Prevotella oris
           F0302]
 gi|298577888|gb|EFI49756.1| NADH-ubiquinone oxidoreductase, NQO9 subunit (NQO9) [Prevotella
           oris C735]
          Length = 177

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 7/135 (5%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEK---GSTSPRFRGEHALRRYPNGEERCIACKLC 69
           LK       + ++ +F  KTT  YP  +      + R RG     R  +   +C AC +C
Sbjct: 15  LKTLGTGLKVTMKEYFTPKTTEQYPENRKTTLHVAKRHRGRLVFLRDEDENYKCTACTMC 74

Query: 70  EAICPAQ----AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           E  CP         +E  P      ++   Y  D+  C++C LC  AC   AI    +FE
Sbjct: 75  EKACPNDTIKIVAHLEENPETGRKKKQLDDYQYDLGDCMFCQLCVNACNFGAIEFVNDFE 134

Query: 126 FATETRQELYYDKER 140
            +   R +L Y  ++
Sbjct: 135 NSVFDRDKLVYHLDK 149


>gi|13541942|ref|NP_111630.1| NADH dehydrogenase subunit I [Thermoplasma volcanium GSS1]
          Length = 154

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 6/133 (4%)

Query: 9   SFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKL 68
             +     +   F   ++ FK   T+ YP EK  T PRF+    L         C+ C L
Sbjct: 19  KRIPFVGMLQGMFTVFKHLFKKPITVQYPEEKAYTPPRFKFRIFLSMD-----DCVGCTL 73

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
           CE +CP  +I +    R +   +R +   ++   C  C  C+E CP +AI      E A 
Sbjct: 74  CEQVCPNLSIRMIVVERNNPHNKRNLYPQVNFGTCTVCRNCEEICPTEAIYLTHELETA- 132

Query: 129 ETRQELYYDKERL 141
            TR   +Y  + L
Sbjct: 133 RTRNNFFYSPQEL 145


>gi|313679552|ref|YP_004057291.1| NADH dehydrogenase i subunit i [Oceanithermus profundus DSM 14977]
 gi|313152267|gb|ADR36118.1| NADH dehydrogenase I subunit I [Oceanithermus profundus DSM 14977]
          Length = 189

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 47/134 (35%), Positives = 60/134 (44%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
           K          +  ++   T  YP+ K    P      AL    +G ERCI C  CE  C
Sbjct: 12  KAIGTGMATVHKRVYEEAPTEFYPYVKPDLPPVSVQSLALVENEDGSERCIVCLQCERAC 71

Query: 74  PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
           PAQ ITIE             R+DID++ C+YC  C EACPV +IV   +FE +T   Q 
Sbjct: 72  PAQVITIERHRNPEGKGFLIDRFDIDLVNCMYCAACVEACPVSSIVTIQDFEMSTYDLQT 131

Query: 134 LYYDKERLLNNGDR 147
           L  D + L     R
Sbjct: 132 LKADVDFLHEQARR 145


>gi|258647048|ref|ZP_05734517.1| NADH-ubiquinone oxidoreductase, NQO9 subunit [Prevotella tannerae
           ATCC 51259]
 gi|260853163|gb|EEX73032.1| NADH-ubiquinone oxidoreductase, NQO9 subunit [Prevotella tannerae
           ATCC 51259]
          Length = 194

 Score = 91.3 bits (225), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/156 (26%), Positives = 61/156 (39%), Gaps = 9/156 (5%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGS--TSPRFRGEHALRRYPNGEERCIACKLCEA 71
           K         +R  F  K T  YP  +       RFRG   +    N E +C+ C LC  
Sbjct: 15  KTLAVGLRTTMRELFTKKITQQYPENRKELVMFDRFRGSLVMPHNENNEHKCVGCGLCMM 74

Query: 72  ICPAQAITIESGPRCHDGTRRTV---RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
            CP  +I + +        ++     R++ ++  C++C LC  ACP DAI    +FE A 
Sbjct: 75  ACPNNSINVVTEMVATPDGKKKKQLLRHEYNLGSCMFCMLCVRACPHDAITFDQSFENAV 134

Query: 129 ETRQELYYDKE----RLLNNGDRWESEIVRNIVTDS 160
             R +L         RLL    R  +        D+
Sbjct: 135 FDRSKLILQLNQPGSRLLEKPARSAAPKAATPADDA 170


>gi|330838011|ref|YP_004412591.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Selenomonas sputigena ATCC 35185]
 gi|329745775|gb|AEB99131.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Selenomonas sputigena ATCC 35185]
          Length = 139

 Score = 90.9 bits (224), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 40/124 (32%), Positives = 60/124 (48%), Gaps = 5/124 (4%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
           K       +   + +  K T++YP EK   + RFRG H         E+CI+C+LC   C
Sbjct: 4   KGLTKGLGVTWGHLWGKKETVSYPEEKIPMTERFRGGH----LAMEAEKCISCRLCATNC 59

Query: 74  PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
           P +A+ +          R    Y  D+ +CIYCG+C E CP  AI    NF  A+  +++
Sbjct: 60  PNKALDLHIVTD-EAKKRHMAEYWHDIGRCIYCGICVEVCPPKAISWDKNFAIASYFKED 118

Query: 134 LYYD 137
           + YD
Sbjct: 119 MRYD 122


>gi|154250402|ref|YP_001411227.1| putative oxidoreductase [Fervidobacterium nodosum Rt17-B1]
 gi|154154338|gb|ABS61570.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Fervidobacterium nodosum Rt17-B1]
          Length = 615

 Score = 90.9 bits (224), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 6/116 (5%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
           +  +  F+   TI  P EK   + R+RG H      N   +CI C  C  ICP  AIT+ 
Sbjct: 11  IAWKNLFEKPVTIRVPKEKREAAERYRGFHI-----NDWNKCIGCGTCAKICPTDAITMV 65

Query: 82  SGPRCHDGT-RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
             P        +  R  ID  +C +C +C + C   ++     + F +   ++ YY
Sbjct: 66  EVPDMKQEYGMKPQRPAIDYGRCSFCAMCVDICTTGSLQMTREYIFVSPNPEDFYY 121


>gi|302327043|gb|ADL26244.1| NADH-quinone oxidoreductase, I subunit [Fibrobacter succinogenes
           subsp. succinogenes S85]
          Length = 180

 Score = 90.9 bits (224), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 45/142 (31%), Positives = 71/142 (50%), Gaps = 8/142 (5%)

Query: 8   VSFLFLKEFVGAFFLCLRY----FFK--AKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
           +  L++ E +   +  L++     F+     TI+YP  +      +R +H L   P+G  
Sbjct: 4   IERLYIFEAIRGLWTTLKHAARGLFRYEELPTISYPEGQPEIRNTYRAKHRLMLRPDGTP 63

Query: 62  RCIACKLCEAICPAQAITIESGP-RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           RC+AC +C A CPA  I IE+         +R +R+DID + C++CGLC EACPVDA+  
Sbjct: 64  RCVACGMCAAACPAHCIFIEATQSDDPRIEKRVMRFDIDHLTCVFCGLCAEACPVDALRM 123

Query: 121 -GPNFEFATETRQELYYDKERL 141
                 F   +R++       L
Sbjct: 124 DTKQIIFEHRSREDFVAHLYDL 145


>gi|118579075|ref|YP_900325.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pelobacter propionicus DSM 2379]
 gi|118580054|ref|YP_901304.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pelobacter propionicus DSM 2379]
 gi|118581586|ref|YP_902836.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pelobacter propionicus DSM 2379]
 gi|156633537|sp|A1ALP7|NUOI_PELPD RecName: Full=NADH-quinone oxidoreductase subunit I; AltName:
           Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1
           subunit I
 gi|118501785|gb|ABK98267.1| NADH dehydrogenase subunit I [Pelobacter propionicus DSM 2379]
 gi|118502764|gb|ABK99246.1| NADH dehydrogenase subunit I [Pelobacter propionicus DSM 2379]
 gi|118504296|gb|ABL00779.1| NADH dehydrogenase subunit I [Pelobacter propionicus DSM 2379]
          Length = 186

 Score = 90.9 bits (224), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 42/156 (26%), Positives = 69/156 (44%), Gaps = 18/156 (11%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKT----------TINYPFE-KGSTSPRFRG 49
           M ++      L++ E +    +    FF              T  YP E +   S   RG
Sbjct: 11  MDLWDR----LYIFEVIRGLCITGSVFFGNMWKWLTFRKGALTAYYPEELRADYSSANRG 66

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGP--RCHDGTRRTVRYDIDMIKCIYCG 107
            H L    +G+ +C++C +C  +CPA  I I+S          +   R++ID  +CI+CG
Sbjct: 67  RHLLTTRADGKVQCVSCNMCATVCPAYCIEIQSAADFNDPFHPKSPDRFEIDYSRCIFCG 126

Query: 108 LCQEACPVDAIVEGPNF-EFATETRQELYYDKERLL 142
            C EACP DAI    +   F    R+ ++  ++ L+
Sbjct: 127 FCVEACPEDAIRMSKDTPNFPGFDRENMWATQDLLM 162


>gi|329765840|ref|ZP_08257406.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329137683|gb|EGG41953.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 165

 Score = 90.5 bits (223), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 35/144 (24%), Positives = 61/144 (42%), Gaps = 21/144 (14%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTS--------------PRFRGEHALRRYPNG 59
              + A    +++    + T+ YP EK                    ++G H L      
Sbjct: 5   SGIIKALNSGIKHIAIKRFTLRYPEEKLKFVGDGYQFDPSTGVGIAGYKGRHMLFHDH-- 62

Query: 60  EERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
              C  C+LC   C   A+AI +   P  H   ++ +   ID  KC++CGLC +ACP  A
Sbjct: 63  ---CTGCQLCSIACEGVAEAIAMVKVPEEHKQNKKAIMPQIDYGKCVFCGLCVDACPFYA 119

Query: 118 IVEGPNFEFATETRQELYYDKERL 141
           +    ++E ++ +++ L Y   +L
Sbjct: 120 LYMTNDYELSSFSKEGLIYTPAQL 143


>gi|288928302|ref|ZP_06422149.1| NADH-ubiquinone oxidoreductase, NQO9 subunit (NQO9) [Prevotella sp.
           oral taxon 317 str. F0108]
 gi|288331136|gb|EFC69720.1| NADH-ubiquinone oxidoreductase, NQO9 subunit (NQO9) [Prevotella sp.
           oral taxon 317 str. F0108]
          Length = 176

 Score = 90.5 bits (223), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 6/134 (4%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEK---GSTSPRFRGEHALRRYPNGEERCIACKLC 69
           +K       + LR +F  K T  YP  +      + R RG   ++R  N   +C+AC +C
Sbjct: 16  IKSLATGLRVTLREYFTPKVTEQYPENRKTTLHVAKRSRGRLVMKRDENDVVKCVACLMC 75

Query: 70  EAICPAQAITIESGPRCHDGTRRT---VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
           E  CP   I I S    ++  ++    V+YD D+  C++C LC  AC  DAI    +FE 
Sbjct: 76  EKACPNGTIRIVSEMVTNEEGKKKRQLVKYDYDLGDCMFCELCTNACNFDAIEFTNDFEN 135

Query: 127 ATETRQELYYDKER 140
           +   R +L  + ++
Sbjct: 136 SVFNRDKLVIELDK 149


>gi|315230617|ref|YP_004071053.1| NADH-ubiquinone oxidoreductase subunit I [Thermococcus barophilus
           MP]
 gi|315183645|gb|ADT83830.1| NADH-ubiquinone oxidoreductase chain I [Thermococcus barophilus MP]
          Length = 213

 Score = 90.5 bits (223), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 13/135 (9%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80
           +L L+Y FK   TI  P+EK   + ++RG H+L       ++CI C  C  ICPA+AI +
Sbjct: 24  WLGLKYLFKKPVTIKIPYEKTQIAEKYRGFHSL-----DWKKCIGCNFCGQICPARAIEM 78

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE--LYYD- 137
                     +R     ID  +C +C  C + CP  A+    N+   TE R+E  L YD 
Sbjct: 79  TWIEVNGKAEKRP-HPKIDYGRCTFCQFCVDVCPTGALGFVSNYMLTTEWREEELLLYDW 137

Query: 138 ----KERLLNNGDRW 148
                +++    +++
Sbjct: 138 VPIHPDKIKEINEKY 152


>gi|167764933|ref|ZP_02437054.1| hypothetical protein BACSTE_03325 [Bacteroides stercoris ATCC
           43183]
 gi|167697602|gb|EDS14181.1| hypothetical protein BACSTE_03325 [Bacteroides stercoris ATCC
           43183]
          Length = 169

 Score = 90.5 bits (223), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 38/130 (29%), Positives = 54/130 (41%), Gaps = 5/130 (3%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEK--GSTSPRFRGEHALRRYPNGEERCIACKLCE 70
           +   +      +  F++ KTT  YP  +     S RFRG   +      E  C+AC LC+
Sbjct: 17  ITSLLTGMKTTMTVFWRKKTTEQYPENRKTLKLSERFRGTLTMPHNEKNEHHCVACGLCQ 76

Query: 71  AICPAQ---AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
             CP       +           +   +Y+ D+  CI+C LC  ACP DAI    NFE A
Sbjct: 77  TACPNDTIKVTSQTIETEDGKKKKILAKYEYDLGSCIFCQLCVNACPHDAITFDQNFEHA 136

Query: 128 TETRQELYYD 137
              R +L   
Sbjct: 137 VFDRSKLVLT 146


>gi|301353382|ref|YP_003795635.1| NADH-plastoquinone oxidoreductase subunit I [Pteridium aquilinum
           subsp. aquilinum]
 gi|301016300|gb|ADK47587.1| NADH-plastoquinone oxidoreductase subunit I [Pteridium aquilinum
           subsp. aquilinum]
          Length = 160

 Score = 90.2 bits (222), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 5/122 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 +   +  ++  T+ YP+EK  +S RFRG            +CIAC++   +CP 
Sbjct: 22  IGQGSAVTSDHSNRSPITVQYPYEKILSSERFRGRIHFEFD-----KCIACEVRVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++         +R   Y ID   CI+CG C E CP + +     +E ++  R EL 
Sbjct: 77  NLPVVDWILLKDIKKKRLKSYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSSYDRHELN 136

Query: 136 YD 137
           YD
Sbjct: 137 YD 138


>gi|330997242|ref|ZP_08321095.1| 4Fe-4S binding domain protein [Paraprevotella xylaniphila YIT
           11841]
 gi|329571037|gb|EGG52744.1| 4Fe-4S binding domain protein [Paraprevotella xylaniphila YIT
           11841]
          Length = 165

 Score = 90.2 bits (222), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 41/169 (24%), Positives = 67/169 (39%), Gaps = 15/169 (8%)

Query: 1   MRIFRCNVSFLF--LKEFVGAFFLCLRYFFKAKTTINYPFEKG---STSPRFRGEHALRR 55
           M  F   +   +   +   G     ++ FF+ K T  YP  +        R R +  +  
Sbjct: 1   MSKFTKYIKRYWRSTESLAGGLKTSIKVFFRKKVTEQYPENRHTTLYIPERHRAQLEMIH 60

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCH---DGTRRTVRYDIDMIKCIYCGLCQEA 112
               +  C+AC LC+  CP   I + S  R        +  V+Y+ D+  C++C LC  A
Sbjct: 61  DDRNQHHCVACGLCQMACPNDTIRVVSEVREDAEGKKKKYLVKYEYDLGSCMFCQLCVNA 120

Query: 113 CPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161
           CP  AI    +FE +   R       ++LL   +R  S +      + P
Sbjct: 121 CPHGAIRFSNDFENSVFER-------DKLLLTLNREGSVLAPAPEKNKP 162


>gi|305666192|ref|YP_003862479.1| NADH dehydrogenase I subunit I [Maribacter sp. HTCC2170]
 gi|88707690|gb|EAQ99931.1| NADH dehydrogenase I, chain I [Maribacter sp. HTCC2170]
          Length = 158

 Score = 90.2 bits (222), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 41/149 (27%), Positives = 55/149 (36%), Gaps = 13/149 (8%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFF---KAKTTINYPF--EKGSTSPRFRGEHALRR 55
           M  F      +  K  +    +  +YF    K   T  YP   E      RFRGE  +  
Sbjct: 1   MSYFSDIFKGI--KTLLTGMSVTGKYFLHSRKGAITQQYPDNRETLKMFDRFRGEVIMPH 58

Query: 56  YPNGEERCIACKLCEAICPAQAITIESG----PRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
                 RC  C+ CE  CP   I I              ++  ++   +  C  CGLC +
Sbjct: 59  DEENRHRCTGCQKCEIACPNGTIEIIWDRGIDEETGKKKKKIDQFVYHLSMCTMCGLCID 118

Query: 112 ACPVDAIVEGPNFEFATETRQEL--YYDK 138
            CP DAI  G NFE +   R  L    +K
Sbjct: 119 VCPTDAIKWGQNFENSVYDRTALTRVLNK 147


>gi|302345403|ref|YP_003813756.1| 4Fe-4S binding domain protein [Prevotella melaninogenica ATCC
           25845]
 gi|302149394|gb|ADK95656.1| 4Fe-4S binding domain protein [Prevotella melaninogenica ATCC
           25845]
          Length = 178

 Score = 90.2 bits (222), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 7/135 (5%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEK---GSTSPRFRGEHALRRYPNGEERCIACKLC 69
           LK       + ++ +F  K+T  YP  +      + R RG    +R      +C AC +C
Sbjct: 16  LKTLATGMKVTMKEYFTPKSTEQYPENRKTTLHVAKRHRGRLVFKRDEEKNHKCTACTMC 75

Query: 70  EAICPAQAIT----IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           E  CP   I     + +        ++ V Y+ D+  C++C LC  AC  DAI    +FE
Sbjct: 76  EKACPNGTIKILSEMVTNEETGKKKKQLVDYEYDLGDCMFCELCVNACNFDAIEFTNDFE 135

Query: 126 FATETRQELYYDKER 140
            A   R +L    ++
Sbjct: 136 NAVFNRSKLILHLDK 150


>gi|288803379|ref|ZP_06408812.1| NADH-ubiquinone oxidoreductase, NQO9 subunit (NQO9) [Prevotella
           melaninogenica D18]
 gi|288334199|gb|EFC72641.1| NADH-ubiquinone oxidoreductase, NQO9 subunit (NQO9) [Prevotella
           melaninogenica D18]
          Length = 178

 Score = 90.2 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 7/135 (5%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEK---GSTSPRFRGEHALRRYPNGEERCIACKLC 69
           LK       + ++ +F  K+T  YP  +      + R RG    +R      +C AC +C
Sbjct: 16  LKTLATGMKVTMKEYFTPKSTEQYPENRKTTLHVAKRHRGRLVFKRDEEKNHKCTACTMC 75

Query: 70  EAICPAQAIT----IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           E  CP   I     + +        ++ V Y+ D+  C++C LC  AC  DAI    +FE
Sbjct: 76  EKACPNGTIKILSEMVTNEETGKKKKQLVDYEYDLGDCMFCELCVNACNFDAIEFTNDFE 135

Query: 126 FATETRQELYYDKER 140
            A   R +L    ++
Sbjct: 136 NAVFDRSKLILHLDK 150


>gi|218176295|ref|YP_002364552.1| NADH-plastoquinone oxidoreductase subunit I [Festuca arundinacea]
 gi|215882379|gb|ACJ70809.1| NADH-plastoquinone oxidoreductase subunit I [Festuca arundinacea]
          Length = 180

 Score = 89.8 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 5/120 (4%)

Query: 18  GAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA 77
             F   L +  +   TI+   EK  T   FRG            +CIAC++C  +CP   
Sbjct: 24  QGFITTLSHTNRLLITIHTLNEKSITPGGFRGRIHFEFD-----KCIACEVCVRVCPIDL 78

Query: 78  ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
             ++   +     ++ + Y ID   CI+CG C E CP + +     +E +T  R EL Y+
Sbjct: 79  PLVDWRFKKDIKRKQLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELNYN 138


>gi|71004228|ref|XP_756780.1| hypothetical protein UM00633.1 [Ustilago maydis 521]
 gi|46095829|gb|EAK81062.1| hypothetical protein UM00633.1 [Ustilago maydis 521]
          Length = 64

 Score = 89.8 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 43/64 (67%), Positives = 49/64 (76%)

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
           M KCIYCG CQEACPVDAIVE  N E++TETR+EL Y+KE+LL NGDR E+EI  NI  D
Sbjct: 1   MTKCIYCGFCQEACPVDAIVETQNTEYSTETREELLYNKEKLLANGDRAEAEIAANIYAD 60

Query: 160 SPYR 163
              R
Sbjct: 61  HLQR 64


>gi|225874133|ref|YP_002755592.1| NADH dehydrogenase I, I subunit [Acidobacterium capsulatum ATCC
           51196]
 gi|225792565|gb|ACO32655.1| NADH dehydrogenase I, I subunit [Acidobacterium capsulatum ATCC
           51196]
          Length = 189

 Score = 89.8 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 40/155 (25%), Positives = 57/155 (36%), Gaps = 15/155 (9%)

Query: 11  LFLKEFVGAFFLCLRYFFK------AKTTINYPFEKGSTSPRFRGEHALRRYPNGEE--- 61
           +  +          R FF          T+ YP E+       R    L    +  E   
Sbjct: 1   MLGEGIAKGLIETARNFFGSFVDKDRLVTVQYPEERHPLPEASRVFPFLLYDGDDAEKGL 60

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGT-----RRTVRYDIDMIKCIYCGLCQEACPVD 116
           RC++C +CE  CP   ITIE                   ++ID+  C+ C +C E CP D
Sbjct: 61  RCVSCHICEKECPPHCITIEKSTDKKPDYVGKSQFYPAVFNIDVSVCMSCQICVEVCPFD 120

Query: 117 AIVEGPNFEFATETR-QELYYDKERLLNNGDRWES 150
           AI     FE +T  R   L + KE+L      +  
Sbjct: 121 AIRMDTAFELSTSDRFDGLLWTKEQLAKPNSHYRQ 155


>gi|260887652|ref|ZP_05898915.1| NADH-quinone oxidoreductase, I subunit [Selenomonas sputigena ATCC
           35185]
 gi|260862668|gb|EEX77168.1| NADH-quinone oxidoreductase, I subunit [Selenomonas sputigena ATCC
           35185]
          Length = 134

 Score = 89.8 bits (221), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 5/120 (4%)

Query: 18  GAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA 77
               +   + +  K T++YP EK   + RFRG H         E+CI+C+LC   CP +A
Sbjct: 3   KGLGVTWGHLWGKKETVSYPEEKIPMTERFRGGH----LAMEAEKCISCRLCATNCPNKA 58

Query: 78  ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
           + +          R    Y  D+ +CIYCG+C E CP  AI    NF  A+  ++++ YD
Sbjct: 59  LDLHIVTD-EAKKRHMAEYWHDIGRCIYCGICVEVCPPKAISWDKNFAIASYFKEDMRYD 117


>gi|14325373|dbj|BAB60277.1| NADH dehydrogenase I chain F [Thermoplasma volcanium GSS1]
          Length = 143

 Score = 89.4 bits (220), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 6/133 (4%)

Query: 9   SFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKL 68
             +     +   F   ++ FK   T+ YP EK  T PRF+    L         C+ C L
Sbjct: 8   KRIPFVGMLQGMFTVFKHLFKKPITVQYPEEKAYTPPRFKFRIFLSMD-----DCVGCTL 62

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
           CE +CP  +I +    R +   +R +   ++   C  C  C+E CP +AI      E A 
Sbjct: 63  CEQVCPNLSIRMIVVERNNPHNKRNLYPQVNFGTCTVCRNCEEICPTEAIYLTHELETA- 121

Query: 129 ETRQELYYDKERL 141
            TR   +Y  + L
Sbjct: 122 RTRNNFFYSPQEL 134


>gi|218129266|ref|ZP_03458070.1| hypothetical protein BACEGG_00843 [Bacteroides eggerthii DSM 20697]
 gi|317475238|ref|ZP_07934505.1| 4Fe-4S binding domain-containing protein [Bacteroides eggerthii
           1_2_48FAA]
 gi|217988644|gb|EEC54964.1| hypothetical protein BACEGG_00843 [Bacteroides eggerthii DSM 20697]
 gi|316908691|gb|EFV30378.1| 4Fe-4S binding domain-containing protein [Bacteroides eggerthii
           1_2_48FAA]
          Length = 170

 Score = 89.4 bits (220), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/129 (31%), Positives = 56/129 (43%), Gaps = 5/129 (3%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEK--GSTSPRFRGEHALRRYPNGEERCIACKLCEA 71
              +      +  F + KTT  YP  +     S RFRG   +      E  C+AC LC+ 
Sbjct: 19  SSLLTGMKTTMTVFCRKKTTEQYPENRKTLKLSERFRGTLTMPHNEQNEHHCVACGLCQM 78

Query: 72  ICPAQAITIESGPRCHDGTRRTV---RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
            CP   I + S     +  ++     +Y+ D+  CI+C LC  ACP DAI    NFE A 
Sbjct: 79  ACPNDTIKVTSETIETEDGKKKKILAKYEYDLGSCIFCQLCVNACPHDAITFDQNFEHAV 138

Query: 129 ETRQELYYD 137
             R +L   
Sbjct: 139 FDRSKLVLT 147


>gi|224026048|ref|ZP_03644414.1| hypothetical protein BACCOPRO_02801 [Bacteroides coprophilus DSM
           18228]
 gi|224019284|gb|EEF77282.1| hypothetical protein BACCOPRO_02801 [Bacteroides coprophilus DSM
           18228]
          Length = 155

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 8/145 (5%)

Query: 1   MRIFRCNVSFLF--LKEFVGAFFLCLRYFFKAKTTINYPFEKG---STSPRFRGEHALRR 55
           M  F   +      +K  +      ++ F++ K T  YP  +        R R    +  
Sbjct: 1   MESFNEYIKGFGSGVKSLLIGMRTSMKVFWQPKVTEQYPENRHTTLHIPERHRAMLVMPH 60

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV---RYDIDMIKCIYCGLCQEA 112
                  C+AC LC+  CP   I + S  R  +  ++     +Y+ ++  C++C LC  A
Sbjct: 61  DSENHHHCVACGLCQMACPNGTIKVTSETREDEDGKKKKFLVKYEYNLGSCMFCQLCVNA 120

Query: 113 CPVDAIVEGPNFEFATETRQELYYD 137
           CP  AI    +FE A   +++L   
Sbjct: 121 CPHGAIQFTNDFENAVFEKEKLLLT 145


>gi|182412571|ref|YP_001817637.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Opitutus terrae PB90-1]
 gi|177839785|gb|ACB74037.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Opitutus
           terrae PB90-1]
          Length = 183

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/123 (32%), Positives = 55/123 (44%), Gaps = 1/123 (0%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPN-GEERCIACKLCEA 71
            K  +    +  R   K   T+ YP E      RFRG   L   P  G+ RC AC LCE 
Sbjct: 14  FKSLLIGMRITGREAAKPILTVQYPRETLKMPARFRGHIQLILDPETGKPRCTACTLCEK 73

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
            CP++ I ++   R  D  +   +Y +D  KC  CG C E CP DAI     +   +  R
Sbjct: 74  ACPSECIDLDGLRREGDKKKSVSKYMLDFTKCSLCGSCVEVCPSDAIEFSKQYNVVSLGR 133

Query: 132 QEL 134
           ++ 
Sbjct: 134 EQF 136


>gi|255007682|ref|ZP_05279808.1| putative NADH dehydrogenase I subunit I [Bacteroides fragilis
           3_1_12]
 gi|313145377|ref|ZP_07807570.1| NADH dehydrogenase subunit I [Bacteroides fragilis 3_1_12]
 gi|313134144|gb|EFR51504.1| NADH dehydrogenase subunit I [Bacteroides fragilis 3_1_12]
          Length = 159

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/129 (30%), Positives = 58/129 (44%), Gaps = 5/129 (3%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGS--TSPRFRGEHALRRYPNGEERCIACKLCE 70
           +   +      ++ +F+ K T  YP  +       RFRG   +    N E RC+AC LC+
Sbjct: 16  IGSLLTGMKTTIKVYFRKKVTEQYPENRAELKMFDRFRGTLTMPHNENNEHRCVACGLCQ 75

Query: 71  AICPAQAITIESGPRCHDGTRRTV---RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
             CP   I + S     +  ++     +Y+ D+  CI+C LC  ACP DAI     FE A
Sbjct: 76  MACPNDTIKVTSETVETEEGKKKKILAKYEYDLGSCIFCQLCVNACPHDAITFDQVFEHA 135

Query: 128 TETRQELYY 136
              R +L  
Sbjct: 136 VFDRSKLIL 144


>gi|217077743|ref|YP_002335461.1| putative oxidoreductase [Thermosipho africanus TCF52B]
 gi|217037598|gb|ACJ76120.1| glutamate synthase, beta subunit [Thermosipho africanus TCF52B]
          Length = 616

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 7/124 (5%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
           KEF        +Y F+   TI  P+ K   + R+RG H      N  E+CI C  C  IC
Sbjct: 9   KEFFAPIK-AWKYMFRKPVTIKVPYVKREAAERYRGFHI-----NDWEKCIGCGTCAKIC 62

Query: 74  PAQAITIESGPRCHDGT-RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           P  AI +           ++  R  ID  +C +C +C + C   ++     +   +   +
Sbjct: 63  PTDAIRMVEVEGLAQEYGKKPQRPVIDYGRCSFCAMCVDICTTSSLKMTREYVHISPDPE 122

Query: 133 ELYY 136
           +  +
Sbjct: 123 DFIF 126


>gi|332881561|ref|ZP_08449210.1| 4Fe-4S binding domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332680559|gb|EGJ53507.1| 4Fe-4S binding domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 165

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/169 (25%), Positives = 68/169 (40%), Gaps = 15/169 (8%)

Query: 1   MRIFRCNVSFLF--LKEFVGAFFLCLRYFFKAKTTINYPFEKG---STSPRFRGEHALRR 55
           M  F   +   +   +   G     ++ FF+ K T  YP  +        R R +  +  
Sbjct: 1   MSKFTKYIKRYWRSTESLAGGLNTSIKVFFRKKVTEQYPENRHTTLYIPERHRAQLEMIH 60

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCH---DGTRRTVRYDIDMIKCIYCGLCQEA 112
               +  C+AC LC+  CP   I + S  R        +  VRY+ D+  C++C LC  A
Sbjct: 61  NDRNQHHCVACGLCQMACPNDTIRVVSEVREDAEGKKKKYLVRYEYDLGSCMFCQLCVNA 120

Query: 113 CPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161
           CP DAI    +FE +   R       ++LL   +R  S +      + P
Sbjct: 121 CPHDAIRFSNDFENSVFER-------DKLLLTLNREGSVLAPAPEKNKP 162


>gi|329962487|ref|ZP_08300487.1| 4Fe-4S binding domain protein [Bacteroides fluxus YIT 12057]
 gi|328530043|gb|EGF56931.1| 4Fe-4S binding domain protein [Bacteroides fluxus YIT 12057]
          Length = 187

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 5/130 (3%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEK--GSTSPRFRGEHALRRYPNGEERCIACKLCE 70
           +   +      +  F + KTT  YP  +     S RFRG   +    N E  C+AC LC+
Sbjct: 35  ITSLLTGMKTTMTVFCRKKTTEQYPENRATLKLSDRFRGTLTMPHNANNEHHCVACGLCQ 94

Query: 71  AICPAQAITIESGPRCHDGTRRTV---RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
             CP   I + S     +  ++     +Y+ D+  C++C LC  ACP DAI+   +FE A
Sbjct: 95  TACPNDTIKVTSEMIETEEGKKKKILAKYEYDLGSCMFCQLCVNACPHDAIMFDQDFEHA 154

Query: 128 TETRQELYYD 137
              R +L   
Sbjct: 155 VFDRSKLVLT 164


>gi|255037784|ref|YP_003088405.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Dyadobacter fermentans DSM 18053]
 gi|254950540|gb|ACT95240.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dyadobacter
           fermentans DSM 18053]
          Length = 513

 Score = 89.0 bits (219), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/154 (24%), Positives = 55/154 (35%), Gaps = 34/154 (22%)

Query: 17  VGAFFLCLRYFF-----KAK---------------TTINYPFEKGSTSPRFRGEHALRRY 56
           +    L LR+ +     +                  TI YP E        R      R 
Sbjct: 16  LTGMRLTLRHLWNARKSRKPADIRSSSFYDQQDGIVTIQYPQETIPIPDNGR-----YRL 70

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTR---------RTVRYDIDMIKCIYCG 107
            N  + CI C  C  +CP   I IE      D  R            ++DIDM KC YCG
Sbjct: 71  HNEMDDCIVCDKCAKVCPVDCIDIEPIKAVEDVGRASDGSPIRLYAAKFDIDMAKCCYCG 130

Query: 108 LCQEACPVDAIVEGPNFEFATETRQELYYDKERL 141
           LC   CP + +     F+++    +++ Y+   L
Sbjct: 131 LCTTVCPTECLTMTKTFDYSELDVRDMVYNYSNL 164


>gi|332885913|gb|EGK06157.1| hypothetical protein HMPREF9456_00031 [Dysgonomonas mossii DSM
           22836]
          Length = 195

 Score = 88.6 bits (218), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/158 (27%), Positives = 63/158 (39%), Gaps = 10/158 (6%)

Query: 1   MRIFRCNVSFLF--LKEFVGAFFLCLRYFFKAKTTINYPFEKGS--TSPRFRGEHALRRY 56
           M       S LF  +K  +    +     +  K T  YP  + +     RFRGE  +   
Sbjct: 1   MSSVSEYFSGLFGGIKSLLTGMRITWGELWTKKITEQYPENRATLVIPDRFRGELTMPHD 60

Query: 57  PNGEERCIACKLCEAICPAQAITIES---GPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
            N E  C AC +C+  CP   I + S           +   +Y  D+  C +C LC   C
Sbjct: 61  ENNEHACTACGICQMNCPNGTIQVISRSIETEDGKKKKVLDKYIYDLGLCTFCNLCVITC 120

Query: 114 PVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
           P DAI     FE +  TR +L    E+L  +G +   +
Sbjct: 121 PSDAIKFANTFENSLFTRSKLI---EQLNRDGSKLREK 155


>gi|317503348|ref|ZP_07961395.1| NADH-quinone oxidoreductase subunit I [Prevotella salivae DSM
           15606]
 gi|315665527|gb|EFV05147.1| NADH-quinone oxidoreductase subunit I [Prevotella salivae DSM
           15606]
          Length = 177

 Score = 88.6 bits (218), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 7/135 (5%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEK---GSTSPRFRGEHALRRYPNGEERCIACKLC 69
           LK       + ++ +F  KTT  YP  +      S R RG    +R  +   +C+AC +C
Sbjct: 15  LKTLGTGLKVTMKEYFTPKTTEQYPENRKTTLHVSKRHRGRLVFKRNEDESYKCVACLMC 74

Query: 70  EAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           E  CP   I     +   P      R+   Y  D+  C++C LC  AC  DAI    +FE
Sbjct: 75  EKACPNGTIQITSHMAEDPETGRKKRQLDDYHYDLGDCMFCQLCVNACNFDAIKFVNDFE 134

Query: 126 FATETRQELYYDKER 140
            +   + +L Y  ++
Sbjct: 135 NSVFDKDKLVYHLDK 149


>gi|260912213|ref|ZP_05918765.1| NADH-ubiquinone oxidoreductase [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260633647|gb|EEX51785.1| NADH-ubiquinone oxidoreductase [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 176

 Score = 88.6 bits (218), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 6/134 (4%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEK---GSTSPRFRGEHALRRYPNGEERCIACKLC 69
           +K       + LR +F  K T  YP  +      + R RG   ++R  N   +C+AC +C
Sbjct: 16  IKSLTTGLRVTLREYFTPKVTEQYPENRKTTLHVAQRSRGRLVMKRDENDVVKCVACLMC 75

Query: 70  EAICPAQAITIESGP---RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
           E  CP   I I S           R+ ++YD D+  C++C LC  AC  DAI    +FE 
Sbjct: 76  EKACPNGTIRIVSEMVTTEEGKKKRQLIKYDYDLGDCMFCELCTNACNFDAIEFTNDFEN 135

Query: 127 ATETRQELYYDKER 140
           +   R +L  + ++
Sbjct: 136 SVFNRDKLVIELDK 149


>gi|167044394|gb|ABZ09071.1| putative 4Fe-4S binding domain protein [uncultured marine
           crenarchaeote HF4000_APKG6D3]
          Length = 165

 Score = 88.6 bits (218), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/144 (23%), Positives = 60/144 (41%), Gaps = 21/144 (14%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTS--------------PRFRGEHALRRYPNG 59
              + A    +++    + T  YP +K                    ++G H L      
Sbjct: 5   SGIIKALNSGIKHIATKRFTFRYPEQKLKFVGDGYQYDPDSGVGIAGYKGRHILFHD--- 61

Query: 60  EERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
             +C  C+LC   C   A+AI +   P      ++ +   ID  KC++CGLC +ACP  A
Sbjct: 62  --KCTGCQLCAIACEDIAEAIAMVKVPEQWKHNKKAIMPQIDYGKCVFCGLCVDACPFYA 119

Query: 118 IVEGPNFEFATETRQELYYDKERL 141
           +    ++E ++ T++ L Y   +L
Sbjct: 120 LYMTNDYELSSFTKEALIYTPAQL 143


>gi|333031510|ref|ZP_08459571.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Bacteroides coprosuis DSM 18011]
 gi|332742107|gb|EGJ72589.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Bacteroides coprosuis DSM 18011]
          Length = 154

 Score = 88.6 bits (218), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/149 (27%), Positives = 61/149 (40%), Gaps = 10/149 (6%)

Query: 1   MRIFRCNVSFLF--LKEFVGAFFLCLRYFFKAKTTINYPF--EKGSTSPRFRGEHALRRY 56
           M   +  +  +   +        + L+ FF  K T  YP   E      RFRG   +   
Sbjct: 5   MGNKKSYIQKIISAISSLTTGMRVTLKEFFTPKVTQCYPENRETLVIPERFRGTLEMPHD 64

Query: 57  PNGEERCIACKLCEAICPAQAITIESG----PRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
            +G  +CIAC LC+  CP   I + S            ++ V Y  ++  C+YC LC + 
Sbjct: 65  EDGNNKCIACGLCQNACPNGTIEVISEMVVDEETGKKKKKLVDYKYNLGSCMYCNLCVDV 124

Query: 113 CPVDAIVEGPNFEFATETRQ--ELYYDKE 139
           CP  AI     FE A   +   EL  +K+
Sbjct: 125 CPTKAIRFNNKFEHAVFDKTVLELKLNKK 153


>gi|282881435|ref|ZP_06290109.1| 4Fe-4S binding domain protein [Prevotella timonensis CRIS 5C-B1]
 gi|281304661|gb|EFA96747.1| 4Fe-4S binding domain protein [Prevotella timonensis CRIS 5C-B1]
          Length = 177

 Score = 88.6 bits (218), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 7/138 (5%)

Query: 10  FLFLKEFVGAFFLCLRYFFKAKTTINYPFEK---GSTSPRFRGEHALRRYPNGEERCIAC 66
           +  +K  V    + L+ +F  K+T  YP  +      + R RG    +R  +G   C+AC
Sbjct: 12  WYAIKSLVTGLRVTLKEYFTPKSTEQYPENRKTTLHVAQRHRGRLVFKRNEDGTHNCVAC 71

Query: 67  KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            +CE  CP + I     +          ++ V Y   +  C++C LC  +C  +AI    
Sbjct: 72  TMCEKACPNETILIKSEMVVNEETGKKKKQLVDYQYKLGDCMFCQLCVNSCNFNAIEFTN 131

Query: 123 NFEFATETRQELYYDKER 140
           +FE +   R  L    ++
Sbjct: 132 DFENSVFERDSLTMHLDK 149


>gi|298373153|ref|ZP_06983143.1| NADH dehydrogenase I, I subunit [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298276057|gb|EFI17608.1| NADH dehydrogenase I, I subunit [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 177

 Score = 88.6 bits (218), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 41/147 (27%), Positives = 63/147 (42%), Gaps = 10/147 (6%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPN-- 58
           M+  +   + +     +   ++ +    + K T  YP  +G  SP  R    L    N  
Sbjct: 1   MKYIKEFFTAI--WRLMQGMYISMCNMLRPKVTEAYPENRGKVSPAPRMRSLLTMPHNSD 58

Query: 59  GEERCIACKLCEAICPAQAITIES----GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
              +C AC +CE+ CP   I + +     P      R   RY  D+  CI+C LC   CP
Sbjct: 59  NYNKCTACGVCESNCPNGTIQVITKKVVDPETGKEKRVLDRYLYDVGSCIFCALCTYTCP 118

Query: 115 VDAIVEGPNFEFATETRQELYY--DKE 139
            DAI  G +FE +  ++  L Y  +KE
Sbjct: 119 FDAIHWGTDFEHSVYSKDRLLYRLNKE 145


>gi|75299143|sp|Q85Y15|NDHI_PHODC RecName: Full=NAD(P)H-quinone oxidoreductase subunit I,
           chloroplastic; AltName: Full=NAD(P)H dehydrogenase
           subunit I; Short=NDH subunit I; AltName:
           Full=NADH-plastoquinone oxidoreductase subunit I
 gi|28195673|gb|AAO27803.1| NADH dehydrogenase subunit I [Phoenix dactylifera]
          Length = 163

 Score = 88.6 bits (218), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 5/118 (4%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFVITLSHTNRLPITIQYPYEKSITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
               ++         ++ + Y ID   CI+CG C E CP + +     +E +T  R E
Sbjct: 77  DLPVVDWRFERDIKKKQLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTSDRHE 134


>gi|307566001|ref|ZP_07628459.1| 4Fe-4S binding domain protein [Prevotella amnii CRIS 21A-A]
 gi|307345189|gb|EFN90568.1| 4Fe-4S binding domain protein [Prevotella amnii CRIS 21A-A]
          Length = 177

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 38/134 (28%), Positives = 58/134 (43%), Gaps = 6/134 (4%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEK---GSTSPRFRGEHALRRYPNGEERCIACKLC 69
           LK       + ++ +F  K+T  YP  +      + R RG     R   G  +C AC +C
Sbjct: 16  LKTLATGLKVTMKEYFTPKSTEQYPENRKTTLHVAARHRGRLTFIRDEEGNYKCTACTMC 75

Query: 70  EAICPAQAITIESGPRCHDGTRRTVR---YDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
           E  CP   I I S    ++  R+  +   Y  D+  C++C LC  AC   AI    +FE 
Sbjct: 76  EKACPNGTIRILSQMVTNEEGRKKKQLVDYQYDLGDCMFCELCTNACGFGAIEFTNDFEN 135

Query: 127 ATETRQELYYDKER 140
           A   R +L    ++
Sbjct: 136 AVFDRSKLVLHLDK 149


>gi|323345260|ref|ZP_08085483.1| NADH-quinone oxidoreductase subunit I [Prevotella oralis ATCC
           33269]
 gi|323093374|gb|EFZ35952.1| NADH-quinone oxidoreductase subunit I [Prevotella oralis ATCC
           33269]
          Length = 177

 Score = 88.2 bits (217), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 35/149 (23%), Positives = 60/149 (40%), Gaps = 9/149 (6%)

Query: 1   MRIFRCNVSFLF--LKEFVGAFFLCLRYFFKAKTTINYPFEK---GSTSPRFRGEHALRR 55
           M   +   S +   +K       +  + +   K+T  YP  +      + R RG    +R
Sbjct: 1   MENKQSYFSGILDGVKSLATGLGVTFKEYLTPKSTEQYPENRKTTLHVAKRHRGRLVFKR 60

Query: 56  YPNGEERCIACKLCEAICPAQ----AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
             +G  +C+AC +CE  CP         + +        R+ V Y  D+  C++C LC  
Sbjct: 61  DDDGNHKCVACLMCEKACPNGTIKIMSEMVTNEETGRKKRQLVDYQYDLGDCMFCQLCVN 120

Query: 112 ACPVDAIVEGPNFEFATETRQELYYDKER 140
           AC  D+I    +FE +   R  L    ++
Sbjct: 121 ACNFDSIEFTNDFENSVFDRNTLVLHLDK 149


>gi|162456309|ref|YP_001618676.1| putative NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So
           ce 56']
 gi|161166891|emb|CAN98196.1| putative NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So
           ce 56']
          Length = 214

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 39/129 (30%), Positives = 54/129 (41%), Gaps = 13/129 (10%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPF-----EKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70
            +    +   + F+   T+ YP            PR+RG   ++        C  CK CE
Sbjct: 17  ILEGMAVTFSHLFREPITVQYPDKTDRPVSEMLPPRYRGFLEVQMD-----ICTGCKRCE 71

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD---AIVEGPNFEFA 127
             CP + I I+         +   R+DIDM KC+YCGLC EAC  +   AI     FE A
Sbjct: 72  RACPIECIAIDLEKDPATKKQAMSRFDIDMGKCMYCGLCVEACKTESTGAIRHTREFEGA 131

Query: 128 TETRQELYY 136
             T   L +
Sbjct: 132 APTLDHLTF 140


>gi|90578224|ref|ZP_01234035.1| hydrogenase 4 Fe-S subunit [Vibrio angustum S14]
 gi|90441310|gb|EAS66490.1| hydrogenase 4 Fe-S subunit [Vibrio angustum S14]
          Length = 182

 Score = 88.2 bits (217), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 13/145 (8%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                   L+     + T  YPF     +  FRG+  L       ++C++C  C   CPA
Sbjct: 1   MFKLLKTVLKT---GEVTTKYPFAPLEVNEDFRGKPEL-----DADQCLSCGACMRACPA 52

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A+ +E+  +         R+++ M +CIYCG C+E CP  AI    NFE A   +++LY
Sbjct: 53  NALVMETDEKSGT-----RRWELSMARCIYCGRCEEVCPTKAIKLSQNFELAVTRKEDLY 107

Query: 136 YDKERLLNNGDRWESEIVRNIVTDS 160
                 L N  + E   V   + D 
Sbjct: 108 EHAVFQLANCRQCERPFVAKKLLDY 132


>gi|87306374|ref|ZP_01088521.1| NADH dehydrogenase subunit I [Blastopirellula marina DSM 3645]
 gi|87290553|gb|EAQ82440.1| NADH dehydrogenase subunit I [Blastopirellula marina DSM 3645]
          Length = 175

 Score = 87.8 bits (216), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 41/149 (27%), Positives = 55/149 (36%), Gaps = 14/149 (9%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKA--------KTTINYPFEKGSTSPRFRGEHA 52
           M  +  NV +  +        + +RY+F               YP      SPR+RG H 
Sbjct: 1   MLTWIRNV-YSAVVTVAEGLSITIRYWFSTYDKDRKAFAEHYEYPELPVQVSPRYRGFHR 59

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
                     CIAC  C   CP   I I               + ID  KC++C LC E 
Sbjct: 60  -----YDLTTCIACDQCAKACPVDCIYIGKERVEGAKGFAVTGFTIDYTKCMFCALCVEP 114

Query: 113 CPVDAIVEGPNFEFATETRQELYYDKERL 141
           CPVD I  G   + ++ +R     D  RL
Sbjct: 115 CPVDCIFMGGTLDLSSYSRDGAIVDFSRL 143


>gi|189459781|ref|ZP_03008566.1| hypothetical protein BACCOP_00410 [Bacteroides coprocola DSM 17136]
 gi|189433510|gb|EDV02495.1| hypothetical protein BACCOP_00410 [Bacteroides coprocola DSM 17136]
          Length = 155

 Score = 87.8 bits (216), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 35/145 (24%), Positives = 58/145 (40%), Gaps = 8/145 (5%)

Query: 1   MRIFRCNVSFLF--LKEFVGAFFLCLRYFFKAKTTINYPFEKG---STSPRFRGEHALRR 55
           M  F   +      +K  +      ++ F + K T  YP  +        R R +  +  
Sbjct: 1   MESFSEYIKGFASGVKSLLIGMRTSMKVFCQPKVTEQYPENRHTTLHIPERHRAQLVMPH 60

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---YDIDMIKCIYCGLCQEA 112
                  CIAC LC+  CP   I + S  R  +  ++      Y+ ++  C++C LC  A
Sbjct: 61  DDENHHHCIACGLCQMACPNGTIKVISEMREDEEGKKKKVLVKYEYNLGSCMFCELCVNA 120

Query: 113 CPVDAIVEGPNFEFATETRQELYYD 137
           CP  AI    +FE A   +++L   
Sbjct: 121 CPHGAIKFSNDFENAVFEKEKLLLT 145


>gi|15897266|ref|NP_341871.1| NADH dehydrogenase subunit I [Sulfolobus solfataricus P2]
 gi|13813471|gb|AAK40661.1| NADH dehydrogenase subunit I (NuoI) [Sulfolobus solfataricus P2]
          Length = 188

 Score = 87.8 bits (216), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 20/153 (13%)

Query: 12  FLKEFVGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70
              E + +    ++YF K  + T+ YP +  +    +RG   L +       CI C LC 
Sbjct: 36  LFAEHIQSIVTGIKYFVKPQRITLQYPEDSLTLPTGYRGMIRLYKD-----VCIGCTLCA 90

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
            ICPA A+ + +               I+  +C++CG C + CPVDA+ E    +     
Sbjct: 91  LICPADAMKMVTESGKKFP-------QINYGRCVFCGFCVDVCPVDALKETKVHDLVFNN 143

Query: 131 RQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           R++L +D        DR+  +I    + D P R
Sbjct: 144 RKQLIFDP-------DRFNVDIDDVPMQDKPVR 169


>gi|110639004|ref|YP_679213.1| NADH:ubiquinone oxidoreductase subunit I [Cytophaga hutchinsonii
           ATCC 33406]
 gi|110281685|gb|ABG59871.1| NADH dehydrogenase subunit I [Cytophaga hutchinsonii ATCC 33406]
          Length = 427

 Score = 87.8 bits (216), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 38/174 (21%), Positives = 56/174 (32%), Gaps = 38/174 (21%)

Query: 1   MRIFRCNVSFLFLK--EFVGAFFLCLRYFF------KAK----------------TTINY 36
           M     N+    +          L L++FF      +                   T  Y
Sbjct: 1   MARRISNIRLFIVSVQSMAIGLRLTLKHFFVSIGVKRKPQVGVMDADYFTHKDGIVTNLY 60

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR----- 91
           P E        R      R  N  + CI C LC  +CP   I IE      +  +     
Sbjct: 61  PHESIPVPDNGR-----YRLHNEVDDCIVCDLCAKVCPVNCIEIEPIKSPVEIGKTSDGS 115

Query: 92  ----RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERL 141
                   +DIDM KC +CGLC   CP + +     ++F+    + + Y    L
Sbjct: 116 TKRIYAATFDIDMAKCCFCGLCTTVCPTECLTMTKTYDFSEYDVRNMVYHFAEL 169


>gi|307611651|emb|CBX01339.1| NADH-quinone oxidoreductase chain I [Legionella pneumophila 130b]
          Length = 138

 Score = 87.8 bits (216), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 60/88 (68%), Positives = 69/88 (78%), Gaps = 1/88 (1%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            ++YFF+ K T+ +P E+   SPRFRG  ALRRYPNGEERCIACKLCEA+CPA AITIES
Sbjct: 27  TVKYFFRKKITVQFPEEQTPLSPRFRGLLALRRYPNGEERCIACKLCEAVCPALAITIES 86

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             R   G+RRT RYDIDM KCI CGLC+
Sbjct: 87  EQRDD-GSRRTTRYDIDMFKCINCGLCE 113


>gi|319901162|ref|YP_004160890.1| NADH dehydrogenase I, chain I [Bacteroides helcogenes P 36-108]
 gi|319416193|gb|ADV43304.1| NADH dehydrogenase I, chain I [Bacteroides helcogenes P 36-108]
          Length = 176

 Score = 87.5 bits (215), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 40/130 (30%), Positives = 55/130 (42%), Gaps = 5/130 (3%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEK--GSTSPRFRGEHALRRYPNGEERCIACKLCE 70
           +   +      +  F + KTT  YP  +     SPRFRG   +    N E RC+AC LC+
Sbjct: 14  IGSLLTGMKTSMTVFLRQKTTEQYPENRATLKLSPRFRGTLIMPHNDNNEHRCVACGLCQ 73

Query: 71  AICPAQ---AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
             CP       +           +   +Y+ D+  C++C LC  ACP DAI    NFE A
Sbjct: 74  MACPNDTIRVTSHTVETEDGKKKKVLEKYEYDLGSCMFCQLCVNACPHDAITFDQNFEHA 133

Query: 128 TETRQELYYD 137
              R  L   
Sbjct: 134 VFDRTRLVLT 143


>gi|258514495|ref|YP_003190717.1| NADH-quinone oxidoreductase, chain I [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257778200|gb|ACV62094.1| NADH-quinone oxidoreductase, chain I [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 160

 Score = 87.5 bits (215), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 7/119 (5%)

Query: 11  LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70
           +F +  +    +  + F+  K T+ YP EK     RF G   L       ++CIAC LC 
Sbjct: 1   MFGRGLLKGLQVTWKEFWTPKFTVQYPEEKHPVPARFHGRFVL-----DADKCIACNLCA 55

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
             CP + I I +        +    Y +++  C++CGLC EAC  DAI    +F     
Sbjct: 56  NACPNRVINIVTAKVGT--KKYLTNYVMNIQYCLFCGLCVEACNKDAIHFSDDFGMTQY 112


>gi|238598205|ref|XP_002394547.1| hypothetical protein MPER_05550 [Moniliophthora perniciosa FA553]
 gi|215463730|gb|EEB95477.1| hypothetical protein MPER_05550 [Moniliophthora perniciosa FA553]
          Length = 81

 Score = 87.5 bits (215), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 45/71 (63%), Positives = 51/71 (71%)

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNG 145
                +     DIDM KCIYCG CQEACPVDAIVE  N EFATETR+EL Y+KE+LL NG
Sbjct: 1   PRWTFQADHENDIDMTKCIYCGFCQEACPVDAIVETQNQEFATETREELMYNKEKLLANG 60

Query: 146 DRWESEIVRNI 156
           DR E+EI  N+
Sbjct: 61  DRAEAEIAANL 71


>gi|332796874|ref|YP_004458374.1| NADH-quinone oxidoreductase, chain I [Acidianus hospitalis W1]
 gi|332694609|gb|AEE94076.1| NADH-quinone oxidoreductase, chain I [Acidianus hospitalis W1]
          Length = 164

 Score = 87.5 bits (215), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 13/136 (9%)

Query: 12  FLKEFVGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70
              + + +    ++Y  K  + T+ YP E  +    +RG   L +       CI C LC 
Sbjct: 14  LFVDHLQSIGTGIKYMVKPQRITLKYPEESLTLPTGYRGIIRLYKD-----VCIGCTLCA 68

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
            ICPA A+ + +        +      I+  +C++CG C + CPVDA+ E    + A   
Sbjct: 69  MICPADAMKMMT-------YQGKKLPTINYGRCVFCGFCVDICPVDALKETGVHDVAFSN 121

Query: 131 RQELYYDKERLLNNGD 146
           R++L +D E+   N D
Sbjct: 122 RRDLIFDPEKFNKNFD 137


>gi|53712158|ref|YP_098150.1| NADH dehydrogenase I chain I [Bacteroides fragilis YCH46]
 gi|60680342|ref|YP_210486.1| putative NADH dehydrogenase I subunit I [Bacteroides fragilis NCTC
           9343]
 gi|253563804|ref|ZP_04841261.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|265765489|ref|ZP_06093764.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|52215023|dbj|BAD47616.1| NADH dehydrogenase I chain I [Bacteroides fragilis YCH46]
 gi|60491776|emb|CAH06534.1| putative NADH dehydrogenase I subunit I [Bacteroides fragilis NCTC
           9343]
 gi|251947580|gb|EES87862.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|263254873|gb|EEZ26307.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|301161875|emb|CBW21419.1| putative NADH dehydrogenase I subunit I [Bacteroides fragilis 638R]
          Length = 159

 Score = 87.1 bits (214), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 39/129 (30%), Positives = 58/129 (44%), Gaps = 5/129 (3%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGS--TSPRFRGEHALRRYPNGEERCIACKLCE 70
           +   +      ++ +F+ K T  YP  +       RFRG   +    N E RC+AC LC+
Sbjct: 16  IGSLLTGMKTTIKVYFRKKVTEQYPENRAELKMFDRFRGTLNMPHNENNEHRCVACGLCQ 75

Query: 71  AICPAQAITIESGPRCHDGTRRTV---RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
             CP   I + S     +  ++     +Y+ D+  CI+C LC  ACP DAI     FE A
Sbjct: 76  MACPNDTIKVTSETIETEEGKKKKILAKYEYDLGSCIFCQLCVNACPHDAITFDQVFEHA 135

Query: 128 TETRQELYY 136
              R +L  
Sbjct: 136 VFDRTKLVL 144


>gi|89895329|ref|YP_518816.1| NADH dehydrogenase I chain I [Desulfitobacterium hafniense Y51]
 gi|219669763|ref|YP_002460198.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|89334777|dbj|BAE84372.1| NADH dehydrogenase I chain I [Desulfitobacterium hafniense Y51]
 gi|219540023|gb|ACL21762.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 135

 Score = 87.1 bits (214), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 6/128 (4%)

Query: 11  LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70
           +  K  +    + L+       T  YP    +     R    L        +CI+C LC 
Sbjct: 1   MLGKGLLTGMGIVLKKMLGPNITEFYPEVMPNLPKTVRSSMGLEPD-----KCISCTLCA 55

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
             CP + IT+ S     +  +    Y +D+ +C++CGLC EACP +A+     FE +   
Sbjct: 56  LACPNKVITLTSEKD-ENNKKVLKTYHMDVGRCLFCGLCTEACPTNALTVTQEFENSVFY 114

Query: 131 RQELYYDK 138
            ++LY+D 
Sbjct: 115 PEDLYWDM 122


>gi|284174515|ref|ZP_06388484.1| NADH dehydrogenase subunit I [Sulfolobus solfataricus 98/2]
 gi|261601935|gb|ACX91538.1| NADH-quinone oxidoreductase, chain I [Sulfolobus solfataricus 98/2]
          Length = 167

 Score = 87.1 bits (214), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 20/153 (13%)

Query: 12  FLKEFVGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70
              E + +    ++YF K  + T+ YP +  +    +RG   L +       CI C LC 
Sbjct: 15  LFAEHIQSIVTGIKYFVKPQRITLQYPEDSLTLPTGYRGMIRLYKD-----VCIGCTLCA 69

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
            ICPA A+ + +               I+  +C++CG C + CPVDA+ E    +     
Sbjct: 70  LICPADAMKMVTESGKKFP-------QINYGRCVFCGFCVDVCPVDALKETKVHDLVFNN 122

Query: 131 RQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           R++L +D        DR+  +I    + D P R
Sbjct: 123 RKQLIFDP-------DRFNVDIDDVPMQDKPVR 148


>gi|303237635|ref|ZP_07324195.1| 4Fe-4S binding domain protein [Prevotella disiens FB035-09AN]
 gi|302482087|gb|EFL45122.1| 4Fe-4S binding domain protein [Prevotella disiens FB035-09AN]
          Length = 177

 Score = 87.1 bits (214), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 40/132 (30%), Positives = 58/132 (43%), Gaps = 7/132 (5%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEK---GSTSPRFRGEHALRRYPNGEERCIACKLC 69
            K         ++ +F  K+T  YP  +      + R RG    +R  +   +C+AC +C
Sbjct: 15  FKTLATGLKTTMKEYFTPKSTEQYPENRKTTLHVAERHRGRLVFKRDESENYKCVACLMC 74

Query: 70  EAICPAQAITIESGPRCHDGTRRTVR----YDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           E  CP   I I+S  R +  T +  R    Y  DM  C++C LC  AC  DAI    +FE
Sbjct: 75  EKACPNGTIRIKSEMRENPETGKKKRVLLDYQYDMGDCMFCQLCVNACNFDAIKFTNDFE 134

Query: 126 FATETRQELYYD 137
            A   R +L   
Sbjct: 135 NAVFDRSKLVLH 146


>gi|323388073|gb|ADX60298.1| hypothetical protein [Furcellaria lumbricalis]
          Length = 59

 Score = 87.1 bits (214), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 42/59 (71%), Positives = 49/59 (83%)

Query: 105 YCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           +CG CQEACPVDAIVEGPN+E+ TET +EL Y+KE LL NGDRWESEI +NI  +S YR
Sbjct: 1   FCGACQEACPVDAIVEGPNYEYGTETHEELLYNKETLLENGDRWESEIAKNIENESMYR 59


>gi|284039760|ref|YP_003389690.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Spirosoma
           linguale DSM 74]
 gi|283819053|gb|ADB40891.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Spirosoma
           linguale DSM 74]
          Length = 507

 Score = 87.1 bits (214), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 43/170 (25%), Positives = 64/170 (37%), Gaps = 36/170 (21%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAK--------------------TTINYPFEK 40
           M  F+   S +     +    L LR+   A                      T+ YP+E+
Sbjct: 1   MSYFKDIQSGIRTT--LKGLSLTLRHLRNATKRRTAEGIASDSYFDLQNGLVTLQYPYEQ 58

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR--------- 91
                   G + LR   N  E CI C  C  +CP   ITI++     +  R         
Sbjct: 59  LPIPDN--GRYRLR---NEIEDCIVCDKCAKVCPVDCITIDAIKATEEVGRASDGSPIRL 113

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERL 141
              ++DIDM KC YCGLC   CP + +     F+++     +L Y+   L
Sbjct: 114 YAAKFDIDMAKCCYCGLCTVVCPTECLTMDKKFDYSEFELGKLTYNFSNL 163


>gi|304382884|ref|ZP_07365367.1| NADH-quinone oxidoreductase subunit I [Prevotella marshii DSM
           16973]
 gi|304336069|gb|EFM02316.1| NADH-quinone oxidoreductase subunit I [Prevotella marshii DSM
           16973]
          Length = 190

 Score = 86.7 bits (213), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 5/128 (3%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKG--STSPRFRGEHALRRYPNGEERCIACKLCE 70
           +   +    +  + +F  K T  YP  +     S R R    +    NG  +C+AC+LC+
Sbjct: 16  MSSLLTGLGVTWKEYFTKKVTEQYPENRKTEHISERHRAILTMPHDENGVNKCVACELCQ 75

Query: 71  AICPAQAITIESGPRCHDGTRRT---VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
             CP   IT+ S     +  ++      Y  D+  C++C LC +ACP DAI    NFE +
Sbjct: 76  KACPNGTITVLSQMVVKEDGKKKKLLTDYVYDLGDCMFCNLCVDACPHDAIRFSNNFENS 135

Query: 128 TETRQELY 135
              R  L 
Sbjct: 136 VFDRNVLV 143


>gi|282877797|ref|ZP_06286610.1| 4Fe-4S binding domain protein [Prevotella buccalis ATCC 35310]
 gi|281300113|gb|EFA92469.1| 4Fe-4S binding domain protein [Prevotella buccalis ATCC 35310]
          Length = 177

 Score = 86.7 bits (213), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 7/134 (5%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEK---GSTSPRFRGEHALRRYPNGEERCIACKLCE 70
           K  V    + L+ +F  K+T  YP  +      + R RG    +R  +G   C+AC +CE
Sbjct: 16  KSLVTGLRVTLKEYFTPKSTEQYPENRKTTLHVAQRHRGRLVFKRNEDGTHNCVACTMCE 75

Query: 71  AICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
             CP + I     +          ++ V Y   +  C++C LC  +C  +AI    +FE 
Sbjct: 76  KACPNETILIKSEMVVNEETGRKKKQLVDYQYKLGDCMFCQLCVNSCNFNAIEFTNDFEN 135

Query: 127 ATETRQELYYDKER 140
           +   R  L    ++
Sbjct: 136 SVFERDSLTMHLDK 149


>gi|123443020|ref|YP_001006995.1| hydrogenase 4 subunit H [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122089981|emb|CAL12838.1| hydrogenase-4 component H [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 195

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 42/142 (29%), Positives = 63/142 (44%), Gaps = 11/142 (7%)

Query: 20  FFLCLRYFFK-AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78
            F   +   K   TT+ YPF+    S  FRG+          E+CIAC  C   CPA A+
Sbjct: 1   MFKLFKTLLKVGDTTVKYPFKPLEVSHGFRGKP-----QYDAEQCIACGACTMACPANAL 55

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
           T+E+        + T ++ + + +CI+CG C+E CP  AIV    FE A   + +LY   
Sbjct: 56  TMETDI-----IKGTRQWQLFLGRCIFCGRCEEVCPTRAIVLSQEFELAVFNKADLYQHA 110

Query: 139 ERLLNNGDRWESEIVRNIVTDS 160
              L +  + +         D 
Sbjct: 111 TFTLAHCQQCQKPFAPKKEVDY 132


>gi|83591008|ref|YP_431017.1| formate hydrogenlyase complex iron-sulfur subunit [Moorella
           thermoacetica ATCC 39073]
 gi|83573922|gb|ABC20474.1| NADH dehydrogenase subunit I [Moorella thermoacetica ATCC 39073]
          Length = 184

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 59/142 (41%), Gaps = 10/142 (7%)

Query: 19  AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78
              L  +     + T+ YPF+    +P FRG+           RCIAC  C   CP  AI
Sbjct: 1   MLKLLKKALQVGEATVEYPFKPVEVAPGFRGKPEYNFD-----RCIACGACATACPPNAI 55

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
           T+E   +          ++I   +CI+CG C+E CP  AI     FE A  ++++LYY  
Sbjct: 56  TMEYDLKQGT-----KTWNIFYGRCIFCGRCEEVCPTGAIALTTEFELAVASKEDLYYRA 110

Query: 139 ERLLNNGDRWESEIVRNIVTDS 160
           E  L            +   + 
Sbjct: 111 EVQLRKCSCCGEYFAPSRELEY 132


>gi|198276155|ref|ZP_03208686.1| hypothetical protein BACPLE_02344 [Bacteroides plebeius DSM 17135]
 gi|198270967|gb|EDY95237.1| hypothetical protein BACPLE_02344 [Bacteroides plebeius DSM 17135]
          Length = 149

 Score = 86.3 bits (212), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 35/148 (23%), Positives = 62/148 (41%), Gaps = 8/148 (5%)

Query: 1   MRIFRCNVSFLF--LKEFVGAFFLCLRYFFKAKTTINYPFEKG---STSPRFRGEHALRR 55
           M  F+  +      +K  +      ++ F + K T  YP  +        R R    +  
Sbjct: 1   MNGFKEYLKGYVGGVKSLLVGMRTSMKVFCQKKITEQYPENRHTTLHIPERHRAMLVMPV 60

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV---RYDIDMIKCIYCGLCQEA 112
              G   CIAC LC+  CP   I + +  R  +  ++     +Y+ ++  C++C LC  A
Sbjct: 61  DEEGNHHCIACGLCQMSCPNGTIRLTTEMRETEDGKKKKFLVKYEYNLGSCMFCMLCVNA 120

Query: 113 CPVDAIVEGPNFEFATETRQELYYDKER 140
           CP +AI    +FE A   +++L     +
Sbjct: 121 CPHNAIQFTNDFENAVFQKEKLVMTLNK 148


>gi|318604975|emb|CBY26473.1| formate hydrogenlyase complex 3 iron-sulfur protein; Formate
           hydrogenlyase subunit 6; Ni,Fe-hydrogenase III medium
           subunit [Yersinia enterocolitica subsp. palearctica Y11]
          Length = 195

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/145 (29%), Positives = 65/145 (44%), Gaps = 13/145 (8%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +  F   L+      TT+ YPF+    S  FRG+          E+CIAC  C   CPA
Sbjct: 1   MLKLFKTILKV---GDTTVKYPFKPLEVSHGFRGKP-----QYDAEQCIACGACTMACPA 52

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A+T+E+        + T ++ + + +CI+CG C+E CP  AIV  P FE A   + +LY
Sbjct: 53  NALTMETD-----FAKGTRQWQLFLGRCIFCGRCEEVCPTRAIVLSPEFELAVFNKADLY 107

Query: 136 YDKERLLNNGDRWESEIVRNIVTDS 160
                 L +  + +         D 
Sbjct: 108 QRATFTLAHCQQCQKPFAPKKEVDY 132


>gi|116754360|ref|YP_843478.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanosaeta thermophila PT]
 gi|116665811|gb|ABK14838.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Methanosaeta
           thermophila PT]
          Length = 180

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 54/148 (36%), Gaps = 9/148 (6%)

Query: 16  FVGAFFLCLRYFFKAK-TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP 74
            + +    L+        T  YP          RG H L         CI C  C  +CP
Sbjct: 2   VLKSLKYTLKTALTTTEVTRLYPEVMMELPANERGIHEL-----DATTCIGCGSCARVCP 56

Query: 75  AQAITIESGPRC-HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
              I +           R+     ID  +C +CGLC + CPV  +  G   E A   R++
Sbjct: 57  NSCIEMVPYKYGNPLKNRKMQFPQIDYGRCTFCGLCVDECPVSCLKMGKRTEIAGWDRKD 116

Query: 134 LYYDKERLLNNGDRWESEIVRNIVTDSP 161
           + Y  +R+     ++  + V  +  ++ 
Sbjct: 117 IVYGPDRIAV--KKFSDKEVAELEAEAK 142


>gi|73670845|ref|YP_306860.1| F420H2 dehydrogenase subunit I [Methanosarcina barkeri str. Fusaro]
 gi|72398007|gb|AAZ72280.1| F420H2 dehydrogenase subunit I [Methanosarcina barkeri str. Fusaro]
          Length = 136

 Score = 85.9 bits (211), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 38/139 (27%), Positives = 57/139 (41%), Gaps = 12/139 (8%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +      +R   +   T  YP ++   S RFRG   L      + +CI C +C   CP 
Sbjct: 2   VLKNIKYAIRNITRPPVTRMYPEKQSELSDRFRGLQIL-----DKSKCIGCGICANTCPN 56

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE--FATETRQE 133
            AI I   P     T++     ID+  C++CGLC + CP  A+  G  +         ++
Sbjct: 57  AAIKIVKAPIAPGSTKQRWFPQIDIGHCLFCGLCIDQCPKGALSSGKEYAKGLVKWKHKD 116

Query: 134 LYYDKERL-----LNNGDR 147
           L    E+L     L  GD 
Sbjct: 117 LLITPEKLAREVDLEEGDE 135


>gi|332161096|ref|YP_004297673.1| hydrogenase 4 subunit H [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|325665326|gb|ADZ41970.1| hydrogenase 4 subunit H [Yersinia enterocolitica subsp. palearctica
           105.5R(r)]
 gi|330863808|emb|CBX73903.1| hydrogenase-4 component H [Yersinia enterocolitica W22703]
          Length = 195

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 43/145 (29%), Positives = 64/145 (44%), Gaps = 13/145 (8%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +  F   L+      TT+ YPF+    S  FRG+          E+CIAC  C   CPA
Sbjct: 1   MLKLFKTILKV---GDTTVKYPFKPLEVSHGFRGKP-----QYDAEQCIACGACTMACPA 52

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A+T+E+        + T ++ + +  CI+CG C+E CP  AIV  P FE A   + +LY
Sbjct: 53  NALTMETDLA-----KGTRQWQLFLGHCIFCGRCEEVCPTRAIVLSPEFELAVFNKADLY 107

Query: 136 YDKERLLNNGDRWESEIVRNIVTDS 160
                 L +  + +         D 
Sbjct: 108 QRATFTLAHCQQCQKPFAPKKEVDY 132


>gi|21228588|ref|NP_634510.1| F420H2 dehydrogenase subunit [Methanosarcina mazei Go1]
 gi|20907082|gb|AAM32182.1| F420H2 dehydrogenase subunit [Methanosarcina mazei Go1]
          Length = 177

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 53/131 (40%), Gaps = 7/131 (5%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           L   +      L+   K + T   P  +   S RFRG   L      + +CI C +C   
Sbjct: 40  LSMVLKNIKYALKNIPKERVTRLCPEVESPLSERFRGLQTL-----DKSKCIGCGICANT 94

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF--EFATET 130
           CP  AI I   P      ++     ID+  C++CGLC + CP  A+  G  +        
Sbjct: 95  CPNSAIKIVKAPIAPGSEKKRWFPQIDIGHCLFCGLCIDQCPKGALSSGKEYCKGMVKWA 154

Query: 131 RQELYYDKERL 141
            ++L    E+L
Sbjct: 155 HKDLLMTPEKL 165


>gi|227488700|ref|ZP_03919016.1| NADH dehydrogenase subunit I [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227091361|gb|EEI26673.1| NADH dehydrogenase subunit I [Corynebacterium glucuronolyticum ATCC
           51867]
          Length = 136

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 38/73 (52%)

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134
            +A       R   G R    Y+I+ ++CI+CG+C EACP  A+     FE A  +R+ L
Sbjct: 1   MEAAANTDEERYSPGERYGKVYEINYLRCIFCGMCIEACPTRALTMTNEFELANVSREAL 60

Query: 135 YYDKERLLNNGDR 147
            Y K++LL   + 
Sbjct: 61  IYGKDKLLAPLED 73


>gi|29349471|ref|NP_812974.1| NADH dehydrogenase I subunit I [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253570159|ref|ZP_04847568.1| NADH dehydrogenase subunit I [Bacteroides sp. 1_1_6]
 gi|29341380|gb|AAO79168.1| NADH dehydrogenase I, chain I [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251840540|gb|EES68622.1| NADH dehydrogenase subunit I [Bacteroides sp. 1_1_6]
          Length = 162

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 5/129 (3%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGS--TSPRFRGEHALRRYPNGEERCIACKLCE 70
           +          ++ +F+ K T  YP  +       RFRG  A+    N E RC+AC LC+
Sbjct: 18  ISTLATGMKTSIKVYFRKKVTEQYPENRKELKMFDRFRGTLAMPHNENNEHRCVACGLCQ 77

Query: 71  AICPAQAITIESGPRCHDGTRRTV---RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
             CP   IT+ S     +  ++     +Y+ D+  C++C LC  ACP DAI    NFE A
Sbjct: 78  IACPNDTITVTSETIETEDGKKKKILAKYEYDLGACMFCQLCVNACPHDAITFDQNFEHA 137

Query: 128 TETRQELYY 136
              R +L  
Sbjct: 138 VFDRTKLVL 146


>gi|298384970|ref|ZP_06994529.1| NADH-ubiquinone oxidoreductase, NQO9 subunit (NQO9) [Bacteroides
           sp. 1_1_14]
 gi|298262114|gb|EFI04979.1| NADH-ubiquinone oxidoreductase, NQO9 subunit (NQO9) [Bacteroides
           sp. 1_1_14]
          Length = 162

 Score = 85.5 bits (210), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 5/129 (3%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGS--TSPRFRGEHALRRYPNGEERCIACKLCE 70
           +          ++ +F+ K T  YP  +       RFRG  A+    N E RC+AC LC+
Sbjct: 18  ISTLATGMKTSIKVYFRKKVTEQYPENRKELKMFDRFRGTLAMPHNENNEHRCVACGLCQ 77

Query: 71  AICPAQAITIESGPRCHDGTRRTV---RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
             CP   IT+ S     +  ++     +Y+ D+  C++C LC  ACP DAI    NFE A
Sbjct: 78  IACPNDTITVTSETIETEDGKKKKILAKYEYDLGACMFCQLCVNACPHDAITFDQNFEHA 137

Query: 128 TETRQELYY 136
              R +L  
Sbjct: 138 VFDRTKLVL 146


>gi|325298886|ref|YP_004258803.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Bacteroides salanitronis DSM 18170]
 gi|324318439|gb|ADY36330.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Bacteroides salanitronis DSM 18170]
          Length = 155

 Score = 85.2 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 34/145 (23%), Positives = 55/145 (37%), Gaps = 8/145 (5%)

Query: 1   MRIFRCNVSFLF--LKEFVGAFFLCLRYFFKAKTTINYPFEKG---STSPRFRGEHALRR 55
           M  F   +      LK  +      ++ F + K T  YP  +        R R    +  
Sbjct: 1   MESFSDYIKGYASGLKSLLVGLRTSMKVFLEPKVTEQYPENRHTTLHIPERHRARLTMIH 60

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---YDIDMIKCIYCGLCQEA 112
                  CIAC LC+  CP   I + +  R     ++      Y+ ++  C++C LC   
Sbjct: 61  DEENHHHCIACGLCQMNCPNGTIKLTTEMREDADGKKKKVLVKYEYNLGSCMFCNLCVNV 120

Query: 113 CPVDAIVEGPNFEFATETRQELYYD 137
           CP +AI    +FE A   + +L   
Sbjct: 121 CPHNAIEFCNDFENAVFEKDKLVLT 145


>gi|220916479|ref|YP_002491783.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954333|gb|ACL64717.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 267

 Score = 85.2 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 45/124 (36%), Gaps = 1/124 (0%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
           K F     + L Y  +  TT+ YP                         C  C+ CE  C
Sbjct: 17  KSFWHGLSITLSYLARRPTTVQYPDRTPMPVRDMLPPRYRGFLEVDTGICTGCQACERAC 76

Query: 74  PAQAITIESGPRC-HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           P   I I       +   R   ++DID  KC++CGLC E CP  +I     FE      +
Sbjct: 77  PIGCIQISLEKDAANPKQRVVTQFDIDEAKCMFCGLCVEPCPTGSIQHTREFEGTHRHIR 136

Query: 133 ELYY 136
            L +
Sbjct: 137 NLVF 140


>gi|197121683|ref|YP_002133634.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
 gi|196171532|gb|ACG72505.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
          Length = 270

 Score = 85.2 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 45/124 (36%), Gaps = 1/124 (0%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
           K F     + L Y  +  TT+ YP                         C  C+ CE  C
Sbjct: 17  KSFWHGLSITLSYLARRPTTVQYPDRTPMPVRDMLPPRYRGFLEVDTGICTGCQACERAC 76

Query: 74  PAQAITIESGPRC-HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           P   I I       +   R   ++DID  KC++CGLC E CP  +I     FE      +
Sbjct: 77  PIGCIQISLEKDAANPKQRVVTQFDIDEAKCMFCGLCVEPCPTGSIQHTREFEGTHRHIR 136

Query: 133 ELYY 136
            L +
Sbjct: 137 NLVF 140


>gi|240102772|ref|YP_002959081.1| NADH dehydrogenase subunit I [Thermococcus gammatolerans EJ3]
 gi|239910326|gb|ACS33217.1| membrane bound oxidoreductase, MbxN subunit (MbxN) [Thermococcus
           gammatolerans EJ3]
          Length = 238

 Score = 85.2 bits (209), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 36/154 (23%), Positives = 64/154 (41%), Gaps = 17/154 (11%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80
           ++ ++Y FK   TI  PFEK   +P++RG H L       ++C+ C  C  ICPA+AI +
Sbjct: 23  WMGIKYLFKKPVTIKIPFEKIEPAPKYRGFHTL-----DWKKCVGCNFCGQICPARAIEM 77

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY----- 135
                     +R     ID  +C +C  C + CP  A+     +   T+  ++       
Sbjct: 78  TWLEVDGKMEKRP-HPKIDYGRCTFCQFCVDVCPTGALGFSEAYLLTTDGTEDALELFNW 136

Query: 136 --YDKERLLNNGDRWES----EIVRNIVTDSPYR 163
                +++    +++       +      D  YR
Sbjct: 137 VPIHPDKVRELNEKFGDYRFPVVKIEKKADGTYR 170


>gi|255691142|ref|ZP_05414817.1| NADH-ubiquinone oxidoreductase, NQO9 subunit [Bacteroides
           finegoldii DSM 17565]
 gi|260623235|gb|EEX46106.1| NADH-ubiquinone oxidoreductase, NQO9 subunit [Bacteroides
           finegoldii DSM 17565]
          Length = 162

 Score = 84.8 bits (208), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 39/129 (30%), Positives = 57/129 (44%), Gaps = 5/129 (3%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGS--TSPRFRGEHALRRYPNGEERCIACKLCE 70
           +          ++ +F+ K T  YP  +       RFRG   +    N E RC+AC LC+
Sbjct: 18  ISTLATGMKTSIKVYFRKKVTEQYPENRKELKMFDRFRGTLNMPHNENNEHRCVACGLCQ 77

Query: 71  AICPAQAITIESGPRCHDGTRRTV---RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
             CP   I +       +  ++     +Y+ D+  CI+C LC  ACP DAI    NFE A
Sbjct: 78  MACPNDTIKVTGETIETEDGKKKKILAKYEYDLGSCIFCQLCVNACPHDAITFDQNFEHA 137

Query: 128 TETRQELYY 136
              R +L  
Sbjct: 138 VFDRTKLVL 146


>gi|86158998|ref|YP_465783.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|110287756|sp|Q2IL14|NUOI2_ANADE RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName:
           Full=NADH dehydrogenase I subunit I 2; AltName:
           Full=NDH-1 subunit I 2
 gi|85775509|gb|ABC82346.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 264

 Score = 84.8 bits (208), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 46/124 (37%), Gaps = 1/124 (0%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
           K F     + L Y  +  TT+ YP                         C  C+ CE  C
Sbjct: 17  KSFWHGLSITLSYLARRPTTVQYPDRTPMPVRDMLPPRYRGFLEVDSGICTGCQACERAC 76

Query: 74  PAQAITIESGPRC-HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           P   I I       +   R   ++DID  KC++CGLC E CP  +I     FE   +  +
Sbjct: 77  PIGCIQISLEKDAANPKQRVVTQFDIDEAKCMFCGLCVEPCPTGSIQHTREFEGTHKHIR 136

Query: 133 ELYY 136
            L +
Sbjct: 137 NLVF 140


>gi|307299701|ref|ZP_07579495.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306914628|gb|EFN45020.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 609

 Score = 84.8 bits (208), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 50/140 (35%), Gaps = 11/140 (7%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M ++                 +  +  F    TI  P      + R+RG H      N  
Sbjct: 1   MSVYDDFKKTF------WGPTVAWKRLFTKPVTIKVPQVYREAAERYRGFHV-----NDW 49

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ++C  C  C  ICP  AI +       D  ++  R  ID  +C +CG+C + C   ++  
Sbjct: 50  DKCSGCGTCAKICPTDAIKMVPVDITVDIGKKAQRPAIDYGRCSFCGMCVDICTTGSLNM 109

Query: 121 GPNFEFATETRQELYYDKER 140
              +   ++     ++  + 
Sbjct: 110 TREYIHISDDPDSFFFLPDE 129


>gi|212550778|ref|YP_002309095.1| NADH dehydrogenase I subunit I [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212549016|dbj|BAG83684.1| NADH dehydrogenase I subunit I [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 152

 Score = 84.8 bits (208), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 37/146 (25%), Positives = 64/146 (43%), Gaps = 8/146 (5%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPN 58
           M   +  +  +     V   ++ +  F + K T  YP ++       R RG+  +     
Sbjct: 1   MNQIKNIIKGI--WHLVQGMYITMLNFLRKKVTEQYPEDRAKVFRYERMRGQLVMSHNEK 58

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR----YDIDMIKCIYCGLCQEACP 114
            + +C  C +C+A CP   I I +     + T +  +    Y  D+  C +C +C  +CP
Sbjct: 59  NQHKCTVCGICQANCPNGTIRIITKKELDEVTEKEKKTLDKYIYDIGSCTFCSICTISCP 118

Query: 115 VDAIVEGPNFEFATETRQELYYDKER 140
            +AI+   NFE AT TR +LY    +
Sbjct: 119 QNAILWTTNFEHATFTRSKLYMKLNK 144


>gi|238788859|ref|ZP_04632650.1| Hydrogenase-4 component H [Yersinia frederiksenii ATCC 33641]
 gi|238723164|gb|EEQ14813.1| Hydrogenase-4 component H [Yersinia frederiksenii ATCC 33641]
          Length = 198

 Score = 84.8 bits (208), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 41/145 (28%), Positives = 61/145 (42%), Gaps = 13/145 (8%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F   L+      TT+ YPF+    S  FRG+          E+CIAC  C   CPA
Sbjct: 1   MFKLFKTILKV---GDTTVKYPFKPLEVSSGFRGKP-----QYDAEQCIACGACTMACPA 52

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A+T+E+            ++ + + +CI+CG C+E CP  AIV    FE A   + +LY
Sbjct: 53  NALTMETDIVNGT-----RQWQLFLGRCIFCGRCEEVCPTRAIVLSQEFELAVFNKADLY 107

Query: 136 YDKERLLNNGDRWESEIVRNIVTDS 160
                 L +  + +         D 
Sbjct: 108 QRASFTLAHCRQCQEPFAPQKEVDY 132


>gi|294630837|ref|ZP_06709397.1| NADH-quinone oxidoreductase subunit I 2 [Streptomyces sp. e14]
 gi|292834170|gb|EFF92519.1| NADH-quinone oxidoreductase subunit I 2 [Streptomyces sp. e14]
          Length = 226

 Score = 84.8 bits (208), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/126 (30%), Positives = 53/126 (42%), Gaps = 14/126 (11%)

Query: 27  FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC 86
             +   T  YP  +    PR RG   L      EE C  C LC   CP   I I+S    
Sbjct: 1   MTRKTVTEQYPDTQPDLPPRTRGVIGLF-----EENCTVCMLCARECPDWCIYIDSHKET 55

Query: 87  ---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
                            R+ ID   C+YCG+C E CP DA+   P FE+A    ++L ++
Sbjct: 56  VPAATPGGRERSRNVLDRFAIDFSLCMYCGICIEVCPFDALFWSPEFEYAETDIRDLTHE 115

Query: 138 KERLLN 143
           +++L  
Sbjct: 116 RDKLRE 121


>gi|14591236|ref|NP_143313.1| NADH dehydrogenase subunit I [Pyrococcus horikoshii OT3]
 gi|3257870|dbj|BAA30553.1| 206aa long hypothetical NADH-plastoquinone oxidoreductase subunit
           [Pyrococcus horikoshii OT3]
          Length = 206

 Score = 84.8 bits (208), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 6/113 (5%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80
           +L L+Y FK   TI  P EK   +P++RG H L       ++CI C  C  ICPA+AI +
Sbjct: 24  WLGLKYLFKKPVTIKIPDEKIEPAPKYRGFHTL-----DWKKCIGCNFCGQICPARAIEM 78

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
                     +R     ID  +C +C  C + CP  A+    ++   T  ++E
Sbjct: 79  TWIEVNGKLEKRP-HPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGKEE 130


>gi|223936525|ref|ZP_03628436.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [bacterium
           Ellin514]
 gi|223894689|gb|EEF61139.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [bacterium
           Ellin514]
          Length = 209

 Score = 84.8 bits (208), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 38/146 (26%), Positives = 57/146 (39%), Gaps = 15/146 (10%)

Query: 11  LFLKEFVGAFFLCLRYFFK------AKTTINYPFEKGSTSPRFRGEHALRRYPNGE---E 61
           +  +  +       R F           T+ YP ++       R    L           
Sbjct: 1   MLGEGIIKGMVETARNFVGSYHDPERLVTVEYPEQRVPPKENARNFPFLVYDGEDPMKGL 60

Query: 62  RCIACKLCEAICPAQAITIESG-----PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           RC+AC++CE  CP + I I                +   +DID+  C+ C +C E CP +
Sbjct: 61  RCVACQICEKECPPKCIYIIKDSVKKPDYMGKMQIQPKVFDIDVSVCMSCQICVEVCPFE 120

Query: 117 AIVEGPNFEFATETR-QELYYDKERL 141
           AI     FE ATE R Q L  +K++L
Sbjct: 121 AIKMDTKFELATEDRFQGLLLNKQQL 146


>gi|302348178|ref|YP_003815816.1| NADH-quinone oxidoreductase subunit I [Acidilobus saccharovorans
           345-15]
 gi|302328590|gb|ADL18785.1| NADH-quinone oxidoreductase subunit I [Acidilobus saccharovorans
           345-15]
          Length = 196

 Score = 84.8 bits (208), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 9/128 (7%)

Query: 17  VGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
           +GA  + ++YF    + T+ YP E       +RG   L        +CI+C  C  ICPA
Sbjct: 24  LGALIVGVKYFIDPNRITLLYPHEYIKLRQGYRGYIVLIFD-----KCISCASCARICPA 78

Query: 76  QAITIESGPRCHDG---TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           +A+ + +            +     I+  +CI+CG C + CP +A+   P  +      Q
Sbjct: 79  RAMKMVTMEVKDKKLNRAMKKKYPVINYNRCIFCGYCVDVCPTEALYHVPYHDLVYLNMQ 138

Query: 133 ELYYDKER 140
           ++  + E 
Sbjct: 139 DMILNVEE 146


>gi|227828038|ref|YP_002829818.1| NADH dehydrogenase subunit I [Sulfolobus islandicus M.14.25]
 gi|227830775|ref|YP_002832555.1| NADH dehydrogenase subunit I [Sulfolobus islandicus L.S.2.15]
 gi|229579671|ref|YP_002838070.1| NADH dehydrogenase subunit I [Sulfolobus islandicus Y.G.57.14]
 gi|229581663|ref|YP_002840062.1| NADH dehydrogenase subunit I [Sulfolobus islandicus Y.N.15.51]
 gi|229585307|ref|YP_002843809.1| NADH dehydrogenase subunit I [Sulfolobus islandicus M.16.27]
 gi|238620268|ref|YP_002915094.1| NADH dehydrogenase subunit I [Sulfolobus islandicus M.16.4]
 gi|284998289|ref|YP_003420057.1| NADH-quinone oxidoreductase, chain I [Sulfolobus islandicus
           L.D.8.5]
 gi|227457223|gb|ACP35910.1| NADH-quinone oxidoreductase, chain I [Sulfolobus islandicus
           L.S.2.15]
 gi|227459834|gb|ACP38520.1| NADH-quinone oxidoreductase, chain I [Sulfolobus islandicus
           M.14.25]
 gi|228010386|gb|ACP46148.1| NADH-quinone oxidoreductase, chain I [Sulfolobus islandicus
           Y.G.57.14]
 gi|228012379|gb|ACP48140.1| NADH-quinone oxidoreductase, chain I [Sulfolobus islandicus
           Y.N.15.51]
 gi|228020357|gb|ACP55764.1| NADH-quinone oxidoreductase, chain I [Sulfolobus islandicus
           M.16.27]
 gi|238381338|gb|ACR42426.1| NADH-quinone oxidoreductase, chain I [Sulfolobus islandicus M.16.4]
 gi|284446185|gb|ADB87687.1| NADH-quinone oxidoreductase, chain I [Sulfolobus islandicus
           L.D.8.5]
          Length = 167

 Score = 84.8 bits (208), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 14/137 (10%)

Query: 5   RCNVSFLFLKEFVGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + N++ LF  E + +    ++YF K  + T+ YP +  S    +RG   L +       C
Sbjct: 9   KENIASLF-AEHIQSIVTGIKYFVKPQRITLQYPEDSLSLPTGYRGMIRLYKD-----VC 62

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           I C LC  ICPA A+ + +               I+  +C++CG C + CPVDA+ E   
Sbjct: 63  IGCTLCALICPADAMKMVT-------QSGKKFPQINYGRCVFCGFCVDVCPVDALKETKV 115

Query: 124 FEFATETRQELYYDKER 140
            +    +R++L +D +R
Sbjct: 116 HDLVFNSRKQLIFDPDR 132


>gi|73748696|ref|YP_307935.1| proton-translocating NADH-quinone oxidoreductase, I subunit
           [Dehalococcoides sp. CBDB1]
 gi|73660412|emb|CAI83019.1| proton-translocating NADH-quinone oxidoreductase, I subunit
           [Dehalococcoides sp. CBDB1]
          Length = 169

 Score = 84.8 bits (208), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/111 (36%), Positives = 54/111 (48%), Gaps = 6/111 (5%)

Query: 20  FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79
             L  ++ F+   T+ YP EK + S R RG   +      +E CIAC  C   CP +AI 
Sbjct: 1   MRLTFKHLFRPWITVQYPEEKLAMSKRIRGNQVIWV----KETCIACLACARACPVKAIN 56

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DAIVEGPNFEFATE 129
           +E   R  D   +     ID   CI+CGLC E+CP  +AI  G  +E  T 
Sbjct: 57  MEVS-RGEDRKLKVDHMSIDFGLCIFCGLCVESCPTKNAIYMGCGYETTTY 106


>gi|330448644|ref|ZP_08312292.1| 4Fe-4S binding domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328492835|dbj|GAA06789.1| 4Fe-4S binding domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 182

 Score = 84.4 bits (207), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/145 (27%), Positives = 62/145 (42%), Gaps = 13/145 (8%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                   L+     + T  YPF     S  FRG+  L       ++C++C  C   CPA
Sbjct: 1   MFKLLKTVLKT---GEVTTKYPFAPLEVSEDFRGKPEL-----DADQCLSCGACMRACPA 52

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A+ +E+  +         R+++ M +CIYCG C+E CP  AI    NFE A   +++LY
Sbjct: 53  NALVMETDEKAGT-----RRWELSMARCIYCGRCEEVCPTKAIKLSQNFELAVTRKEDLY 107

Query: 136 YDKERLLNNGDRWESEIVRNIVTDS 160
                 L N  +     V   + + 
Sbjct: 108 EHAVFQLANCRQCGRPFVAKKLLEY 132


>gi|20090359|ref|NP_616434.1| F(420)H(2) dehydrogenase, subunit FpoI [Methanosarcina acetivorans
           C2A]
 gi|19915364|gb|AAM04914.1| F(420)H(2) dehydrogenase, subunit FpoI [Methanosarcina acetivorans
           C2A]
          Length = 136

 Score = 84.4 bits (207), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 7/128 (5%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +      ++   K + T   P  +   S RFRG   L      + +CI C +C   CP 
Sbjct: 2   VLKNIKYAVKNIPKKRVTRLCPEVESPLSDRFRGLQIL-----DKSKCIGCGICANTCPN 56

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE--FATETRQE 133
            AI I   P     +++    +ID+  C++CGLC + CP  A+  G  +         ++
Sbjct: 57  NAIKIVKAPIAPGSSKQRWFPEIDIGHCLFCGLCIDQCPKGALSSGKEYTKGMVKWAHKD 116

Query: 134 LYYDKERL 141
           L    E+L
Sbjct: 117 LLMTPEKL 124


>gi|270294465|ref|ZP_06200667.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270275932|gb|EFA21792.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 167

 Score = 84.4 bits (207), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/144 (27%), Positives = 61/144 (42%), Gaps = 7/144 (4%)

Query: 1   MRIFRCNVSFLF--LKEFVGAFFLCLRYFFKAKTTINYPFEK--GSTSPRFRGEHALRRY 56
           M+     +  L   +   +      +  F + KTT  YP  +     S RFRG   +   
Sbjct: 1   MKEKNSYIGGLIHGVTSLLTGMKTTMTVFCRRKTTEQYPENRSTLKLSDRFRGTLTMPHN 60

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV---RYDIDMIKCIYCGLCQEAC 113
              E RC+AC LC+  CP   I +       +  ++     +Y+ D+  C++C LC  AC
Sbjct: 61  DKNEHRCVACGLCQMACPNDTIKVTGEMVETEDGKKKKILVKYEYDLGSCMFCQLCVNAC 120

Query: 114 PVDAIVEGPNFEFATETRQELYYD 137
           P DAI    +FE A   R +L   
Sbjct: 121 PHDAITFDQDFEHAVFDRTKLVMT 144


>gi|160891174|ref|ZP_02072177.1| hypothetical protein BACUNI_03621 [Bacteroides uniformis ATCC 8492]
 gi|317481070|ref|ZP_07940149.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 4_1_36]
 gi|156859395|gb|EDO52826.1| hypothetical protein BACUNI_03621 [Bacteroides uniformis ATCC 8492]
 gi|316902783|gb|EFV24658.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 4_1_36]
          Length = 167

 Score = 84.4 bits (207), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 40/144 (27%), Positives = 61/144 (42%), Gaps = 7/144 (4%)

Query: 1   MRIFRCNVSFLF--LKEFVGAFFLCLRYFFKAKTTINYPFEK--GSTSPRFRGEHALRRY 56
           M+     +  L   +   +      +  F + KTT  YP  +     S RFRG   +   
Sbjct: 1   MKEKNSYIGGLIHGVTSLLTGMKTTMTVFCRRKTTEQYPENRSTLKLSDRFRGTLTMPHN 60

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV---RYDIDMIKCIYCGLCQEAC 113
              E RC+AC LC+  CP   I +       +  ++     +Y+ D+  C++C LC  AC
Sbjct: 61  DKNEHRCVACGLCQMACPNDTIKVTGEMVETEDGKKKKILVKYEYDLGSCMFCQLCVNAC 120

Query: 114 PVDAIVEGPNFEFATETRQELYYD 137
           P DAI    +FE A   R +L   
Sbjct: 121 PHDAITFDQDFEHAVFDRTKLVMT 144


>gi|150021107|ref|YP_001306461.1| putative oxidoreductase [Thermosipho melanesiensis BI429]
 gi|149793628|gb|ABR31076.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosipho
           melanesiensis BI429]
          Length = 616

 Score = 84.4 bits (207), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 44/115 (38%), Gaps = 6/115 (5%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
             ++  K   TI  P+ K   + R+RG H      N    CI C  C  ICP  AI +  
Sbjct: 17  AWKFLLKKPVTIKVPYVKREAAERYRGFHI-----NDWNECIGCGTCSKICPTDAIKMVE 71

Query: 83  GPRCHDGT-RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
                     +  R  ID  +C +C +C + C   ++     +   +   ++  +
Sbjct: 72  IEDLPQQYGEKPQRPVIDYGRCSFCAMCVDICTTGSLKMTREYVHISPNPEDFIF 126


>gi|238761068|ref|ZP_04622045.1| Hydrogenase-4 component H [Yersinia kristensenii ATCC 33638]
 gi|238761321|ref|ZP_04622297.1| Hydrogenase-4 component H [Yersinia kristensenii ATCC 33638]
 gi|238700295|gb|EEP93036.1| Hydrogenase-4 component H [Yersinia kristensenii ATCC 33638]
 gi|238700548|gb|EEP93288.1| Hydrogenase-4 component H [Yersinia kristensenii ATCC 33638]
          Length = 184

 Score = 84.4 bits (207), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 42/142 (29%), Positives = 63/142 (44%), Gaps = 11/142 (7%)

Query: 20  FFLCLRYFFK-AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78
            F   +   K   TT+ YPF+    S  FRG+          E+CIAC  C   CPA A+
Sbjct: 1   MFKLFKTLLKVGDTTVKYPFKPLEVSHGFRGKP-----QYDAEQCIACGACTMACPANAL 55

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
           T+E+        + T ++ + + +CI+CG C+E CP  AIV    FE A   + +LY   
Sbjct: 56  TMETDI-----IKGTRQWQLFLGRCIFCGRCEEVCPTRAIVLSQEFELAVFNKADLYQRA 110

Query: 139 ERLLNNGDRWESEIVRNIVTDS 160
              L +  + +         D 
Sbjct: 111 SFTLAHCQQCQKPFAPKKEVDY 132


>gi|65317271|ref|ZP_00390230.1| COG1143: Formate hydrogenlyase subunit 6/NADH:ubiquinone
           oxidoreductase 23 kD subunit (chain I) [Bacillus
           anthracis str. A2012]
          Length = 120

 Score = 84.4 bits (207), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 52/121 (42%), Gaps = 7/121 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD--GT 90
           T +YP +      RFRG           E+CI C  C  ICP   I +            
Sbjct: 2   TYDYPNQPLPLPDRFRGIQKFY-----PEKCIVCNQCSNICPTDCIQLTGKKHPDPTKKG 56

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWES 150
           +    YDI+   CI C LC E CP +AIV   NFE A  +R +L+ + + L  N +    
Sbjct: 57  KIIDTYDINFEICILCDLCTEVCPTEAIVMTNNFELAEYSRDDLFKNLQWLDENDENVRK 116

Query: 151 E 151
           E
Sbjct: 117 E 117


>gi|323475129|gb|ADX85735.1| NADH-quinone oxidoreductase, chain I [Sulfolobus islandicus REY15A]
 gi|323477861|gb|ADX83099.1| NADH-quinone oxidoreductase, chain I [Sulfolobus islandicus
           HVE10/4]
          Length = 167

 Score = 84.0 bits (206), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 14/137 (10%)

Query: 5   RCNVSFLFLKEFVGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + N++ LF  E + +    ++Y  K  + T+ YP +  S    +RG   L +       C
Sbjct: 9   KENIASLF-AEHIQSIVTGIKYLVKPQRITLQYPEDSLSLPTGYRGMIRLYKD-----VC 62

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           I C LC  ICPA A+ + +               I+  +C++CG C + CPVDA+ E   
Sbjct: 63  IGCTLCALICPADAMKMVT-------QSGKKFPQINYGRCVFCGFCVDVCPVDALKETKV 115

Query: 124 FEFATETRQELYYDKER 140
            +    +R++L +D +R
Sbjct: 116 HDLVFNSRKQLIFDPDR 132


>gi|330834249|ref|YP_004408977.1| NADH dehydrogenase subunit I [Metallosphaera cuprina Ar-4]
 gi|329566388|gb|AEB94493.1| NADH dehydrogenase subunit I [Metallosphaera cuprina Ar-4]
          Length = 169

 Score = 84.0 bits (206), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 13/132 (9%)

Query: 17  VGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
           V A    L+YF K  K T+ YP E  +    +RG   L +       CI C LC  +CPA
Sbjct: 23  VQAVGAGLKYFVKPQKITLKYPEESMTLPSGYRGMIRLYKD-----VCIGCTLCAMVCPA 77

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A+ + +       +       I+  +C++C  C + CPVDA+ E    +     R+EL 
Sbjct: 78  DAMKMVTEQGKKLPS-------INYGRCVFCAFCVDICPVDALKETGVHDATFSNRRELI 130

Query: 136 YDKERLLNNGDR 147
           +  ++   + D+
Sbjct: 131 FTPDKFDQDFDQ 142


>gi|70608047|ref|YP_256917.1| NADH dehydrogenase subunit I [Sulfolobus acidocaldarius DSM 639]
 gi|68568695|gb|AAY81624.1| NADH-quinone oxidoreductase [Sulfolobus acidocaldarius DSM 639]
          Length = 165

 Score = 84.0 bits (206), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 13/136 (9%)

Query: 13  LKEFVGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71
             + + A    L+Y  +  + T+ YP E  S    +RG   L +       CI C LC  
Sbjct: 16  FVDHLQAVGTGLKYAVRPQRITLKYPEEAISLPTGYRGMIRLYKD-----ICIGCTLCAL 70

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           ICPA A+ + +               I+  +C++CG C + CPVDA+ E    +     R
Sbjct: 71  ICPADAMKMTTEA-------GKKLPVINYGRCVFCGFCVDVCPVDALRETRVHDTIFTNR 123

Query: 132 QELYYDKERLLNNGDR 147
           ++L +  ++     D 
Sbjct: 124 RDLVFRPDKFDQAYDE 139


>gi|260171806|ref|ZP_05758218.1| NADH dehydrogenase I, chain I [Bacteroides sp. D2]
 gi|315920118|ref|ZP_07916358.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313693993|gb|EFS30828.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 162

 Score = 84.0 bits (206), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 40/129 (31%), Positives = 57/129 (44%), Gaps = 5/129 (3%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGS--TSPRFRGEHALRRYPNGEERCIACKLCE 70
           +          ++ +F+ K T  YP  +       RFRG   +    N E RCIAC LC+
Sbjct: 18  ISTLATGMKTSIKVYFRKKVTEQYPENRKELKMFDRFRGTLNMPHNENNEHRCIACGLCQ 77

Query: 71  AICPAQAITIESGPRCHDGTRRTVR---YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
             CP   I + S     +  ++      Y+ D+  C++C LC  ACP DAI    NFE A
Sbjct: 78  TACPNDTIKVISETVETEDGKKKKILATYEYDLGACMFCQLCVNACPHDAITFDQNFEHA 137

Query: 128 TETRQELYY 136
              R +L  
Sbjct: 138 VFDRTKLVL 146


>gi|313202846|ref|YP_004041503.1| NADH dehydrogenase i subunit i [Paludibacter propionicigenes WB4]
 gi|312442162|gb|ADQ78518.1| putative NADH dehydrogenase I subunit I [Paludibacter
           propionicigenes WB4]
          Length = 166

 Score = 84.0 bits (206), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 39/141 (27%), Positives = 55/141 (39%), Gaps = 7/141 (4%)

Query: 1   MRIFRCNVSFLF--LKEFVGAFFLCLRYFFKAKTTINYPFEKGS--TSPRFRGEHALRRY 56
           M+      S LF  +K  +       +  +  K T  YP  + +   S RFR E  +   
Sbjct: 1   MKSILKYFSGLFTGIKSLLTGMGETWKELWTKKVTQQYPENRDTLVISDRFRAELTMPHD 60

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK---CIYCGLCQEAC 113
            N E  C AC +C+  CP   I +       +  ++    D        C +C LC   C
Sbjct: 61  ENNEHACTACGICQMNCPNGTIKVNPKMIETEDGKKKKILDTYQWDLGMCTFCNLCVITC 120

Query: 114 PVDAIVEGPNFEFATETRQEL 134
           P DAI     FE A  TR +L
Sbjct: 121 PSDAIKFENTFENAVFTRGKL 141


>gi|312183559|gb|ADQ42349.1| NADH:ubiquinone oxidoreductase I [Methanosaeta harundinacea]
          Length = 185

 Score = 84.0 bits (206), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 7/127 (5%)

Query: 16  FVGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP 74
            +    +  +      + T  YP +        RG H L        +CI C  C  ICP
Sbjct: 2   VLKNLKMTFKRATSGVEVTRLYPEKIMDLPDAERGVHVL-----EIRKCIGCGACARICP 56

Query: 75  AQAITIESGPRCHDGTRRTVRY-DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
              I + +  R +    + ++Y  ID  +C++CGLC + CP   ++    FE +   R++
Sbjct: 57  NDCIKLVAYSRGNPVKNKKLQYPQIDYGRCMFCGLCVDDCPASCLIMSKQFEISGWNRED 116

Query: 134 LYYDKER 140
           + YD E 
Sbjct: 117 IIYDPED 123


>gi|124004525|ref|ZP_01689370.1| NADH dehydrogenase i, 23 kda subunit [Microscilla marina ATCC
           23134]
 gi|123990097|gb|EAY29611.1| NADH dehydrogenase i, 23 kda subunit [Microscilla marina ATCC
           23134]
          Length = 488

 Score = 84.0 bits (206), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 37/186 (19%), Positives = 58/186 (31%), Gaps = 47/186 (25%)

Query: 17  VGAFFLCLRYFF-----KAK----------------TTINYPFEKGSTSPRFRGEHALRR 55
           +    L +++ F     +                   T  YP+E        R      R
Sbjct: 22  LIGLKLSIKHAFEARQRRKPADSIATPAYFEQQTGRVTTQYPYEAIPVPDNGR-----YR 76

Query: 56  YPNGEERCIACKLCEAICPAQAITIES---------GPRCHDGTRRTVRYDIDMIKCIYC 106
             N  + CI C  C  ICP   I IE                       +DIDM KC YC
Sbjct: 77  LFNEMDDCIVCDKCAKICPVDCIDIEPIRATGQIGTASDGSPIRLYAATFDIDMAKCCYC 136

Query: 107 GLCQEACPVDAIVEGPNFEFATETRQELYYD-----------KERLLNNGDRWESEIVRN 155
           GLC   CP + +     ++++     ++ Y            K+ L     + E E  + 
Sbjct: 137 GLCTTVCPTECLTMTKAYDYSEVDITDMIYHFSNLTPDQVQEKKDLFEQYMK-EKEATKK 195

Query: 156 IVTDSP 161
            +  + 
Sbjct: 196 QMAQAK 201


>gi|238784033|ref|ZP_04628048.1| Hydrogenase-4 component H [Yersinia bercovieri ATCC 43970]
 gi|238715010|gb|EEQ07007.1| Hydrogenase-4 component H [Yersinia bercovieri ATCC 43970]
          Length = 208

 Score = 83.6 bits (205), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 43/145 (29%), Positives = 64/145 (44%), Gaps = 13/145 (8%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +  F   L+      TT+ YPF+    S  FRG+           +CIAC  C   CPA
Sbjct: 1   MLKLFKTILKV---GDTTVKYPFKPLEVSHGFRGKP-----QYEAAQCIACGACTMACPA 52

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A+T+E+        R T ++ + + +CI+CG C+E CP  AIV  P FE A   + +LY
Sbjct: 53  NALTMETDIA-----RGTRQWQLFLGRCIFCGRCEEVCPTRAIVLSPEFELAVFNKADLY 107

Query: 136 YDKERLLNNGDRWESEIVRNIVTDS 160
                 L +  + +         D 
Sbjct: 108 QRATFTLTSCQQCQRPFAPKKEVDY 132


>gi|283780218|ref|YP_003370973.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pirellula staleyi DSM 6068]
 gi|283438671|gb|ADB17113.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pirellula
           staleyi DSM 6068]
          Length = 175

 Score = 83.6 bits (205), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 40/149 (26%), Positives = 58/149 (38%), Gaps = 14/149 (9%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFF------KAKTTIN--YPFEKGSTSPRFRGEHA 52
           M  +  N+ +L +       ++ LRY+       +   T    YP +    + R+RG H 
Sbjct: 1   MWDWLRNI-YLAVYTVGHGMYVTLRYWLITYQPERGTFTERFEYPEKPVPVAARYRGFHR 59

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
                     CIAC  C   CP   I I           +   + ID  KC++C LC E 
Sbjct: 60  -----YDLTTCIACDQCAKACPVDCIYIGKERVEGSKGFKITGFAIDYSKCMFCALCVEP 114

Query: 113 CPVDAIVEGPNFEFATETRQELYYDKERL 141
           CPVD I  G   + +  +R     D  RL
Sbjct: 115 CPVDCIFMGATHDLSCYSRDGCIVDFSRL 143


>gi|317050799|ref|YP_004111915.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Desulfurispirillum indicum S5]
 gi|316945883|gb|ADU65359.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfurispirillum indicum S5]
          Length = 176

 Score = 83.6 bits (205), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 40/145 (27%), Positives = 59/145 (40%), Gaps = 11/145 (7%)

Query: 19  AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78
                L+Y    + T  YP        R RG          EE+CIAC +C   CP   I
Sbjct: 35  GMKTVLKYAGGPRPTREYPEVVRPLPERSRGRLYFI-----EEKCIACNMCVKACPIDVI 89

Query: 79  --TIESGPRCHDGTRRTV----RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
                   R  DG  + V    +Y +D+ +CI CGLC E CP DA+ +   +E A   ++
Sbjct: 90  QLEFHREDREVDGKVKKVPVIDKYTVDIGECISCGLCAEHCPTDAVFQSQEYETAYYYKE 149

Query: 133 ELYYDKERLLNNGDRWESEIVRNIV 157
               +K+ L      +  +  R + 
Sbjct: 150 LFVMNKDELAMTFPEYIEKKSRELK 174


>gi|119719990|ref|YP_920485.1| NADH dehydrogenase subunit I [Thermofilum pendens Hrk 5]
 gi|119525110|gb|ABL78482.1| NADH-quinone oxidoreductase, chain I [Thermofilum pendens Hrk 5]
          Length = 156

 Score = 83.6 bits (205), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 11/126 (8%)

Query: 17  VGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
           V A    L+Y  K  + T+ YP         +RG           E+CI C LC  ICPA
Sbjct: 12  VRAVLTGLKYLVKPNRITVYYPEYYVEPPEGYRGMIKYY-----PEKCIQCGLCAMICPA 66

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A+ +        G     R  ++  +CI+CG C + CP DA+      + A  + +EL 
Sbjct: 67  GAMKMYVKKGEKKG-----RPGVNYQRCIFCGFCVDICPQDALEMTKVHDVAFSSLEELV 121

Query: 136 YDKERL 141
           +  E+L
Sbjct: 122 FPPEKL 127


>gi|82544937|ref|YP_408884.1| hydrogenase 4 subunit H [Shigella boydii Sb227]
 gi|81246348|gb|ABB67056.1| hydrogenase 4 Fe-S subunit [Shigella boydii Sb227]
 gi|320176267|gb|EFW51328.1| Hydrogenase-4 component H [Shigella dysenteriae CDC 74-1112]
 gi|320185185|gb|EFW59965.1| Hydrogenase-4 component H [Shigella flexneri CDC 796-83]
 gi|332092788|gb|EGI97857.1| hydrogenase-4 component H [Shigella boydii 3594-74]
          Length = 179

 Score = 83.6 bits (205), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 58/138 (42%), Gaps = 15/138 (10%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +      +R       T+ YPF     SP FRG+  L        +CIAC  C   CPA
Sbjct: 1   MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLM-----PSQCIACGACA--CPA 50

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A+TI++  + +        + + + +CIYCG C+E CP  AI    NFE     + +LY
Sbjct: 51  NALTIQTDDQQNS-----RTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 105

Query: 136 YDKERLLNNGDRWESEIV 153
                 L    R E    
Sbjct: 106 TRATFHLQRCSRCERPFA 123


>gi|14520923|ref|NP_126398.1| NADH dehydrogenase subunit I [Pyrococcus abyssi GE5]
 gi|5458140|emb|CAB49629.1| nuoI NADH dehydrogenase I, subunit I [Pyrococcus abyssi GE5]
          Length = 214

 Score = 83.6 bits (205), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 6/113 (5%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80
           +L L+Y FK   TI  P+EK   +P++RG H L       ++CI C  C  ICPA+AI +
Sbjct: 24  WLGLKYLFKKPVTIKIPYEKIDPAPKYRGFHTL-----DWKKCIGCNFCGQICPARAIEM 78

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
                     +R     ID  +C +C  C + CP  A+    ++   T   +E
Sbjct: 79  TWIEVDGKMEKRP-HPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEE 130


>gi|193068443|ref|ZP_03049406.1| iron-sulfur cluster-binding protein [Escherichia coli E110019]
 gi|192958395|gb|EDV88835.1| iron-sulfur cluster-binding protein [Escherichia coli E110019]
          Length = 179

 Score = 83.6 bits (205), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 41/141 (29%), Positives = 59/141 (41%), Gaps = 15/141 (10%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +      +R       T+ YPF     SP FRG+  L        +CIAC  C   CPA
Sbjct: 1   MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLM-----PSQCIACGACA--CPA 50

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A+TI++  + +        + + + +CIYCG C+E CP  AI    NFE     + +LY
Sbjct: 51  NALTIQTDDQQNS-----RTWQLYLRRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 105

Query: 136 YDKERLLNNGDRWESEIVRNI 156
                 L    R E    +  
Sbjct: 106 TRATFHLQRCSRCERPFAQQK 126


>gi|260768584|ref|ZP_05877518.1| formate hydrogenlyase complex 3 iron-sulfur protein [Vibrio
           furnissii CIP 102972]
 gi|260616614|gb|EEX41799.1| formate hydrogenlyase complex 3 iron-sulfur protein [Vibrio
           furnissii CIP 102972]
 gi|315180293|gb|ADT87207.1| hydrogenase 4 Fe-S subunit [Vibrio furnissii NCTC 11218]
          Length = 192

 Score = 83.6 bits (205), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 39/145 (26%), Positives = 61/145 (42%), Gaps = 13/145 (8%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +      L+       T  YPF     +  FRG+  L        +CI+C  C   CPA
Sbjct: 1   MIKLLKTILKT---GDVTAKYPFAPFEVAEDFRGKPEL-----NASQCISCGACTRACPA 52

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A+ +E+  +         R+++ + +CIYCG C+E CP  AI     FE A   +++LY
Sbjct: 53  NALIMETDEQNGT-----RRWELSLARCIYCGRCEEVCPTHAIELSKAFELAVTKKEDLY 107

Query: 136 YDKERLLNNGDRWESEIVRNIVTDS 160
              E  L N    +   V   + + 
Sbjct: 108 ESAEFELANCTCCQRPFVAKKLLNY 132


>gi|157161948|ref|YP_001459266.1| hydrogenase 4 subunit H [Escherichia coli HS]
 gi|170019228|ref|YP_001724182.1| hydrogenase 4 subunit H [Escherichia coli ATCC 8739]
 gi|194437671|ref|ZP_03069767.1| iron-sulfur cluster-binding protein [Escherichia coli 101-1]
 gi|253772620|ref|YP_003035451.1| hydrogenase 4 subunit H [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
 gi|254162462|ref|YP_003045570.1| hydrogenase 4 subunit H [Escherichia coli B str. REL606]
 gi|297519670|ref|ZP_06938056.1| hydrogenase 4 subunit H [Escherichia coli OP50]
 gi|300930125|ref|ZP_07145547.1| hydrogenase 4 subunit H [Escherichia coli MS 187-1]
 gi|157067628|gb|ABV06883.1| iron-sulfur cluster-binding protein [Escherichia coli HS]
 gi|169754156|gb|ACA76855.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli ATCC 8739]
 gi|194423477|gb|EDX39468.1| iron-sulfur cluster-binding protein [Escherichia coli 101-1]
 gi|242378086|emb|CAQ32859.1| hydrogenase 4, component H, subunit of hydrogenase 4 [Escherichia
           coli BL21(DE3)]
 gi|253323664|gb|ACT28266.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|253974363|gb|ACT40034.1| hydrogenase 4, Fe-S subunit [Escherichia coli B str. REL606]
 gi|253978530|gb|ACT44200.1| hydrogenase 4, Fe-S subunit [Escherichia coli BL21(DE3)]
 gi|300461969|gb|EFK25462.1| hydrogenase 4 subunit H [Escherichia coli MS 187-1]
 gi|323961282|gb|EGB56894.1| 4Fe-4S binding domain-containing protein [Escherichia coli H489]
 gi|323970990|gb|EGB66239.1| 4Fe-4S binding domain-containing protein [Escherichia coli TA007]
          Length = 179

 Score = 83.6 bits (205), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 41/141 (29%), Positives = 59/141 (41%), Gaps = 15/141 (10%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +      +R       T+ YPF     SP FRG+  L        +CIAC  C   CPA
Sbjct: 1   MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLM-----PSQCIACGACA--CPA 50

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A+TI++  + +        + + + +CIYCG C+E CP  AI    NFE     + +LY
Sbjct: 51  NALTIQTDDQQNS-----RTWQLYLRRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 105

Query: 136 YDKERLLNNGDRWESEIVRNI 156
                 L    R E    +  
Sbjct: 106 TRATFHLQRCSRCERPFAQQK 126


>gi|301167763|emb|CBW27347.1| putative NADH dehydrogenase I subunit I [Bacteriovorax marinus SJ]
          Length = 174

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/149 (26%), Positives = 55/149 (36%), Gaps = 19/149 (12%)

Query: 18  GAFFLCLRYFFK-AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
               + L+Y +     TI YP  +       R         N  E CI+C  C   CP  
Sbjct: 33  KGMGITLKYVYGVKPVTIEYPEVREILPENSRSRL-----FNDAENCISCYQCAVACPVD 87

Query: 77  AITIESGPRCHDGTRRTV-----------RYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
            I I +  R  D  +              +Y ID   C YCGLC   CP + +    ++E
Sbjct: 88  CIYITATKRDKDAPKLKASNGNPIRLDLHQYTIDTALCCYCGLCTTVCPTECLTHTTDYE 147

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVR 154
           FA  T   + YD   L  +   W   IV+
Sbjct: 148 FAQYTLDSMKYDY--LAPDIRAWRDRIVK 174


>gi|317493923|ref|ZP_07952340.1| 4Fe-4S binding domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316918250|gb|EFV39592.1| 4Fe-4S binding domain-containing protein [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 185

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/145 (26%), Positives = 59/145 (40%), Gaps = 13/145 (8%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +       ++      T+ YP +     P FRG+          E+CIAC  C A CPA
Sbjct: 1   MLKLLKTAFKH---RDATVAYPAKPMQVDPNFRGKPE-----YNPEQCIACGACTAACPA 52

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A+T+E+  R          + + + +CI+C  C+E CP  AI   P FE A   + +L+
Sbjct: 53  NALTMETNAREGT-----RTWSLHLGRCIFCARCEEVCPTAAIKLTPEFELAVWNKNDLF 107

Query: 136 YDKERLLNNGDRWESEIVRNIVTDS 160
              E  + N     +        D 
Sbjct: 108 QTAEFKVCNCVECGAPYAAQKEIDY 132


>gi|238757223|ref|ZP_04618410.1| Hydrogenase-4 component H [Yersinia aldovae ATCC 35236]
 gi|238704601|gb|EEP97131.1| Hydrogenase-4 component H [Yersinia aldovae ATCC 35236]
          Length = 184

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 60/142 (42%), Gaps = 11/142 (7%)

Query: 20  FFLCLRYFFK-AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78
                +   K   TT+ YPF+    S  FRG+           +CIAC  C   CPA A+
Sbjct: 1   MLKLFKTLLKVGDTTVKYPFKPLEVSHGFRGKP-----QYDAGQCIACGACTMACPANAL 55

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
           T+E+        + T ++ + + +CI+CG C+E CP  AIV    FE A   + +LY   
Sbjct: 56  TMETDLA-----KGTRQWQLFLGRCIFCGRCEEVCPTRAIVLSQEFELAVFNKADLYQRA 110

Query: 139 ERLLNNGDRWESEIVRNIVTDS 160
              L +  +           D 
Sbjct: 111 TFTLAHCQQCRQPFAPKKEVDY 132


>gi|238749930|ref|ZP_04611434.1| Hydrogenase-4 component H [Yersinia rohdei ATCC 43380]
 gi|238711859|gb|EEQ04073.1| Hydrogenase-4 component H [Yersinia rohdei ATCC 43380]
          Length = 206

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 41/145 (28%), Positives = 62/145 (42%), Gaps = 13/145 (8%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +  F   L+      TT+ YPF+    S  FRG+          E+CIAC  C   CPA
Sbjct: 1   MLKLFKTILKV---GDTTVKYPFKPLEVSAGFRGKP-----QYDAEQCIACGACTMACPA 52

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A+T+E+            ++ + + +CI+CG C+E CP  AIV    FE A  ++ +LY
Sbjct: 53  NALTMETDIANST-----RQWQLFLGRCIFCGRCEEVCPTRAIVLSQEFELAVFSKADLY 107

Query: 136 YDKERLLNNGDRWESEIVRNIVTDS 160
                 L +  +           D 
Sbjct: 108 QRANFTLAHCQQCHQPFAPKKEVDY 132


>gi|300770866|ref|ZP_07080743.1| NADH dehydrogenase I [Sphingobacterium spiritivorum ATCC 33861]
 gi|300762139|gb|EFK58958.1| NADH dehydrogenase I [Sphingobacterium spiritivorum ATCC 33861]
          Length = 189

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 60/170 (35%), Gaps = 36/170 (21%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAK--------------------TTINYPFEK 40
           M + +  ++ L     V    L +R+ F A+                     T+ +P +K
Sbjct: 1   MMLIKTTINALLTA--VKGLSLTVRHLFGARRARHELDITKDHYFDKQDGVATVQFPKQK 58

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR--------- 91
                  R +  +         CI C LC   CP   I I +        +         
Sbjct: 59  MPIPEVARYQLEVEIDD-----CIVCDLCAKACPVDCIDILAIKSPEAIGKTSDGSVKRL 113

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERL 141
              ++DIDM KC+YCGLC   CP + I     ++ +T    +L Y    +
Sbjct: 114 YAEKFDIDMAKCMYCGLCTVVCPTECITMTNQYDRSTSKLTDLIYGFSDM 163


>gi|295086641|emb|CBK68164.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
           kD subunit (chain I) [Bacteroides xylanisolvens XB1A]
          Length = 165

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 43/149 (28%), Positives = 63/149 (42%), Gaps = 13/149 (8%)

Query: 1   MRIFRCN-VSFLFLKEFV-------GAFFLCLRYFFKAKTTINYPFEKGS--TSPRFRGE 50
           M+I       + +L   V             ++ +F+ K T  YP  +       RFRG 
Sbjct: 1   MKIMEYKDKKYTYLGGLVHGISTLATGMKTSIKVYFRKKVTEQYPENRKELKMFDRFRGT 60

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---YDIDMIKCIYCG 107
             +    N E RC+AC LC+  CP   I + S     +  ++      Y+ D+  C++C 
Sbjct: 61  LNMPHNENNEHRCVACGLCQMACPNDTIKVTSETVETEDGKKKKILATYEYDLGACMFCQ 120

Query: 108 LCQEACPVDAIVEGPNFEFATETRQELYY 136
           LC  ACP DAI    NFE A   R +L  
Sbjct: 121 LCVNACPHDAITFDQNFEHAVFDRTKLVL 149


>gi|300087937|ref|YP_003758459.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527670|gb|ADJ26138.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 193

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 6/119 (5%)

Query: 12  FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71
           F +  +    +  R+  +   T+ YP +K + S R RG   +       E CI+C+ CE 
Sbjct: 7   FGEGLLRGLKITARHLGRKWITVQYPEQKLTMSRRVRGTDIIW----DRESCISCRACER 62

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DAIVEGPNFEFATE 129
            CP  AI +E   R  D   +T    +D+  CI+CGLC E+CP   +I  G N+   T 
Sbjct: 63  ACPVGAIKMEVS-RGEDKKLKTDDITVDLGLCIFCGLCIESCPTGVSIYIGYNYANTTY 120


>gi|237714287|ref|ZP_04544768.1| NADH dehydrogenase subunit I [Bacteroides sp. D1]
 gi|237719849|ref|ZP_04550330.1| NADH dehydrogenase I [Bacteroides sp. 2_2_4]
 gi|262408336|ref|ZP_06084883.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|293373611|ref|ZP_06619959.1| 4Fe-4S binding domain protein [Bacteroides ovatus SD CMC 3f]
 gi|294646450|ref|ZP_06724091.1| 4Fe-4S binding domain protein [Bacteroides ovatus SD CC 2a]
 gi|294809422|ref|ZP_06768127.1| 4Fe-4S binding domain protein [Bacteroides xylanisolvens SD CC 1b]
 gi|298480348|ref|ZP_06998546.1| NADH-ubiquinone oxidoreductase, NQO9 subunit (NQO9) [Bacteroides
           sp. D22]
 gi|229445779|gb|EEO51570.1| NADH dehydrogenase subunit I [Bacteroides sp. D1]
 gi|229451118|gb|EEO56909.1| NADH dehydrogenase I [Bacteroides sp. 2_2_4]
 gi|262353888|gb|EEZ02981.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292631436|gb|EFF50066.1| 4Fe-4S binding domain protein [Bacteroides ovatus SD CMC 3f]
 gi|292638221|gb|EFF56598.1| 4Fe-4S binding domain protein [Bacteroides ovatus SD CC 2a]
 gi|294443358|gb|EFG12120.1| 4Fe-4S binding domain protein [Bacteroides xylanisolvens SD CC 1b]
 gi|298273629|gb|EFI15192.1| NADH-ubiquinone oxidoreductase, NQO9 subunit (NQO9) [Bacteroides
           sp. D22]
          Length = 162

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/129 (30%), Positives = 57/129 (44%), Gaps = 5/129 (3%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGS--TSPRFRGEHALRRYPNGEERCIACKLCE 70
           +          ++ +F+ K T  YP  +       RFRG   +    N E RC+AC LC+
Sbjct: 18  ISTLATGMKTSIKVYFRKKVTEQYPENRKELKMFDRFRGTLNMPHNENNEHRCVACGLCQ 77

Query: 71  AICPAQAITIESGPRCHDGTRRTVR---YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
             CP   I + S     +  ++      Y+ D+  C++C LC  ACP DAI    NFE A
Sbjct: 78  MACPNDTIKVTSETVETEDGKKKKILATYEYDLGACMFCQLCVNACPHDAITFDQNFEHA 137

Query: 128 TETRQELYY 136
              R +L  
Sbjct: 138 VFDRTKLVL 146


>gi|153807448|ref|ZP_01960116.1| hypothetical protein BACCAC_01728 [Bacteroides caccae ATCC 43185]
 gi|149129810|gb|EDM21022.1| hypothetical protein BACCAC_01728 [Bacteroides caccae ATCC 43185]
          Length = 162

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/129 (31%), Positives = 58/129 (44%), Gaps = 5/129 (3%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGS--TSPRFRGEHALRRYPNGEERCIACKLCE 70
           +          ++ +F+ K T  YP  +       RFRG   +    N E RC+AC LC+
Sbjct: 18  ISTLATGMKTSIKVYFRKKVTEQYPENRKELKMFDRFRGTLNMPHNENNEHRCVACGLCQ 77

Query: 71  AICPAQAITIESGPRCHDGTRRTV---RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
             CP   I + S     +  ++     RY+ D+  C++C LC  ACP DAI    NFE A
Sbjct: 78  MACPNDTIKVISETIETEDGKKKKILARYEYDLGACMFCQLCVNACPHDAITFDQNFEHA 137

Query: 128 TETRQELYY 136
              R +L  
Sbjct: 138 VFDRTKLVL 146


>gi|238799240|ref|ZP_04642687.1| Hydrogenase-4 component H [Yersinia mollaretii ATCC 43969]
 gi|238716905|gb|EEQ08774.1| Hydrogenase-4 component H [Yersinia mollaretii ATCC 43969]
          Length = 184

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/129 (31%), Positives = 59/129 (45%), Gaps = 10/129 (7%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
           TT+ YPF+    S  FRG+          E+CIAC  C   CPA A+T+E+         
Sbjct: 14  TTVKYPFKPLEVSQGFRGKP-----QYDAEQCIACGACTLACPANALTMETDIANGT--- 65

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
              ++ + + +CI+CG C+E CP  AIV    FE A   + +LY      L +  + +S 
Sbjct: 66  --RQWQLFLGRCIFCGRCEEVCPTRAIVLSQEFELAVFNKADLYQRASFTLAHCQQCQSA 123

Query: 152 IVRNIVTDS 160
                  D 
Sbjct: 124 FAPKKEVDY 132


>gi|57234302|ref|YP_181653.1| proton-translocating NADH-quinone oxidoreductase, I subunit
           [Dehalococcoides ethenogenes 195]
 gi|57224750|gb|AAW39807.1| proton-translocating NADH-quinone oxidoreductase, I subunit
           [Dehalococcoides ethenogenes 195]
          Length = 169

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/111 (34%), Positives = 53/111 (47%), Gaps = 6/111 (5%)

Query: 20  FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79
             L  ++ F+   T+ YP EK + S R RG   +      +E CIAC  C   CP +AI 
Sbjct: 1   MRLTFKHLFRPWITVQYPEEKLTMSKRIRGTQVIWV----KETCIACLACARACPVKAIN 56

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-AIVEGPNFEFATE 129
           +E   R  D   +     ID   C++CGLC E+CP   +I  G  +E  T 
Sbjct: 57  MEVS-RGEDRKLKVDHMSIDFGLCVFCGLCVESCPTKTSIYMGYGYETTTY 106


>gi|18977813|ref|NP_579170.1| NADH dehydrogenase subunit I [Pyrococcus furiosus DSM 3638]
 gi|18893564|gb|AAL81565.1| NADH dehydrogenase subunit [Pyrococcus furiosus DSM 3638]
          Length = 208

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/119 (31%), Positives = 55/119 (46%), Gaps = 12/119 (10%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80
           +  L+Y FK   TI  P+E    +PR+RG H L       ++CI C +C  ICPA+AI +
Sbjct: 24  WFGLKYLFKKPVTIKIPYEFIEPAPRYRGFHTL-----DWKKCIGCNMCGQICPARAIEM 78

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE--LYYD 137
                      +     ID  +C +C  C + CP  A+     +   T  R+E  L YD
Sbjct: 79  TWIE-----GEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIETYMLTTTWREEELLLYD 132


>gi|332157675|ref|YP_004422954.1| NADH dehydrogenase subunit I [Pyrococcus sp. NA2]
 gi|331033138|gb|AEC50950.1| NADH dehydrogenase subunit I [Pyrococcus sp. NA2]
          Length = 202

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 6/113 (5%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80
           +L L+Y FK   TI  P+EK   +P++RG H L       ++CI C  C  ICPA+AI +
Sbjct: 21  WLGLKYLFKKPVTIKIPYEKIDPAPKYRGFHTL-----DWKKCIGCNFCGQICPARAIEM 75

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
                     +R     ID  +C +C  C + CP  A+    ++   T   +E
Sbjct: 76  TWIEVDGKLEKRP-HPKIDYGRCTFCQFCVDVCPTGALGFVESYILTTTGDEE 127


>gi|189468080|ref|ZP_03016865.1| hypothetical protein BACINT_04474 [Bacteroides intestinalis DSM
           17393]
 gi|189436344|gb|EDV05329.1| hypothetical protein BACINT_04474 [Bacteroides intestinalis DSM
           17393]
          Length = 170

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/130 (27%), Positives = 54/130 (41%), Gaps = 5/130 (3%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEK--GSTSPRFRGEHALRRYPNGEERCIACKLCE 70
           +   +      +  F + K T  YP  +       RFRG   +      E  CIAC LC+
Sbjct: 18  IGSLLTGMKTTMTVFCRRKVTEQYPENRATLEMFDRFRGTLTMPHNERNEHHCIACGLCQ 77

Query: 71  AICPAQAITIESGPRCHDGTRRTV---RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
             CP   I + S     +  ++     +Y+ D+  C++C LC  ACP  AI    +FE A
Sbjct: 78  IACPNDTIKVTSEMIETEDGKKKKILAKYEYDLGSCMFCQLCVTACPHGAITFATDFEHA 137

Query: 128 TETRQELYYD 137
              R +L   
Sbjct: 138 VFDRTKLVKT 147


>gi|261868404|ref|YP_003256326.1| hydrogenase-4 subunit H [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261413736|gb|ACX83107.1| hydrogenase-4 component H [Aggregatibacter actinomycetemcomitans
           D11S-1]
          Length = 215

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 38/117 (32%), Positives = 54/117 (46%), Gaps = 11/117 (9%)

Query: 20  FFLCLRYFFK-AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78
            F  L+  FK    T  YPF+       FRG+  L         CI C  C   CPA A+
Sbjct: 1   MFKLLKTVFKAGDVTTKYPFKPYEVDDDFRGKPELNSDQ-----CIVCAACTMACPANAL 55

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
           T+ + P   D       + + + +CI+CG C+E CP  AI    +FE +   +Q+LY
Sbjct: 56  TMRTDPVTGD-----RTWSLFLGRCIFCGRCEEVCPTKAIRLTQDFELSVTNKQDLY 107


>gi|299148402|ref|ZP_07041464.1| NADH-ubiquinone oxidoreductase, NQO9 subunit (NQO9) [Bacteroides
           sp. 3_1_23]
 gi|298513163|gb|EFI37050.1| NADH-ubiquinone oxidoreductase, NQO9 subunit (NQO9) [Bacteroides
           sp. 3_1_23]
          Length = 162

 Score = 82.8 bits (203), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 39/129 (30%), Positives = 57/129 (44%), Gaps = 5/129 (3%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGS--TSPRFRGEHALRRYPNGEERCIACKLCE 70
           +          ++ +F+ K T  YP  +       RFRG   +    N E RC+AC LC+
Sbjct: 18  ISTLATGMKTSIKVYFRKKVTEQYPENRKELKMFDRFRGTLNMPHNENNEHRCVACGLCQ 77

Query: 71  AICPAQAITIESGPRCHDGTRRTVR---YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
             CP   I + S     +  ++      Y+ D+  C++C LC  ACP DAI    NFE A
Sbjct: 78  MACPNDTIKVTSETVETEDGKKKKILATYEYDLGACMFCQLCVNACPHDAITFDQNFEHA 137

Query: 128 TETRQELYY 136
              R +L  
Sbjct: 138 VFDRTKLVL 146


>gi|288801147|ref|ZP_06406603.1| NADH-quinone oxidoreductase subunit I (NADH dehydrogenase I subunit
           I) [Prevotella sp. oral taxon 299 str. F0039]
 gi|288332081|gb|EFC70563.1| NADH-quinone oxidoreductase subunit I (NADH dehydrogenase I subunit
           I) [Prevotella sp. oral taxon 299 str. F0039]
          Length = 203

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 5/127 (3%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEA 71
           K  +    +  + +F  K T  YP  + +   S R RG   +    +G+ +C+AC +CE+
Sbjct: 17  KSLLTGMGVTWKEYFTPKITEQYPENRKTVHISARHRGTLIMPHDEDGKNKCVACLMCES 76

Query: 72  ICPAQAITIESGPRCHDGTRRT---VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
            CP   I I+         ++      Y+ D+  C++C LC  AC  DAI    +FE + 
Sbjct: 77  ACPNGTIRIKWDNVVTPDGKKKRLLQDYEYDLGDCMFCQLCVNACNYDAIHFSNSFEHSV 136

Query: 129 ETRQELY 135
             R  L 
Sbjct: 137 FNRNVLV 143


>gi|74313014|ref|YP_311433.1| hydrogenase 4 subunit H [Shigella sonnei Ss046]
 gi|73856491|gb|AAZ89198.1| hydrogenase 4 Fe-S subunit [Shigella sonnei Ss046]
 gi|323169073|gb|EFZ54750.1| hydrogenase-4 component H [Shigella sonnei 53G]
 gi|323170246|gb|EFZ55899.1| hydrogenase-4 component H [Escherichia coli LT-68]
          Length = 179

 Score = 82.5 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 58/138 (42%), Gaps = 15/138 (10%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +      +R       T+ YPF     SP FRG+  L        +CIAC  C   CPA
Sbjct: 1   MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLM-----PSQCIACGACA--CPA 50

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A+TI++  + +        + + + +CIYCG C+E CP  AI    NFE     + +LY
Sbjct: 51  NALTIQTDDQQNS-----RTWQLYLRRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 105

Query: 136 YDKERLLNNGDRWESEIV 153
                 L    R E    
Sbjct: 106 TRATFHLQRCSRCERPFA 123


>gi|312129477|ref|YP_003996817.1| 4fe-4S ferredoxin iroN-sulfur binding domain protein
           [Leadbetterella byssophila DSM 17132]
 gi|311906023|gb|ADQ16464.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Leadbetterella byssophila DSM 17132]
          Length = 576

 Score = 82.5 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/196 (18%), Positives = 64/196 (32%), Gaps = 44/196 (22%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAK--------------------TTINYPFEKGS 42
            FR  +  +          L L++ + A+                     T+ YP  +  
Sbjct: 17  YFRNILRGIRTTS--KGLGLTLKHLWAARHSKGHMELRSTEFFQVDEGNVTLQYPHARLE 74

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR---------RT 93
                 G + L    +    CI C  C  +CP   I IE+                    
Sbjct: 75  VPDT--GRYQLDCEIDD---CIVCDKCAKVCPVDCIEIEAIKSPELIRYASDGSPVRLHA 129

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY--------DKERLLNNG 145
            +++IDM KC +CGLC   CP + +     ++F+ E    L +        + E      
Sbjct: 130 AKFNIDMAKCCFCGLCTTVCPTECLTMTSEYDFSVEEVDLLNFAFSNLSAKEAEEKRELY 189

Query: 146 DRWESEIVRNIVTDSP 161
            ++ +E   +   D P
Sbjct: 190 QQFVAEKEASKALDKP 205


>gi|191169663|ref|ZP_03031362.1| iron-sulfur cluster-binding protein [Escherichia coli B7A]
 gi|209919964|ref|YP_002294048.1| hydrogenase 4 subunit H [Escherichia coli SE11]
 gi|218555014|ref|YP_002387927.1| hydrogenase 4 subunit H [Escherichia coli IAI1]
 gi|218696115|ref|YP_002403782.1| hydrogenase 4 subunit H [Escherichia coli 55989]
 gi|307312518|ref|ZP_07592151.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli W]
 gi|309794468|ref|ZP_07688891.1| hydrogenase 4 subunit H [Escherichia coli MS 145-7]
 gi|190900297|gb|EDV60147.1| iron-sulfur cluster-binding protein [Escherichia coli B7A]
 gi|209913223|dbj|BAG78297.1| hydrogenase 4 Fe-S subunit [Escherichia coli SE11]
 gi|218352847|emb|CAU98646.1| hydrogenase 4, Fe-S subunit [Escherichia coli 55989]
 gi|218361782|emb|CAQ99379.1| hydrogenase 4, Fe-S subunit [Escherichia coli IAI1]
 gi|306907441|gb|EFN37945.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli W]
 gi|308121924|gb|EFO59186.1| hydrogenase 4 subunit H [Escherichia coli MS 145-7]
 gi|315061807|gb|ADT76134.1| hydrogenase 4, Fe-S subunit [Escherichia coli W]
 gi|320200048|gb|EFW74637.1| Hydrogenase-4 component H [Escherichia coli EC4100B]
 gi|323377612|gb|ADX49880.1| hydrogenase 4 subunit H [Escherichia coli KO11]
 gi|324020087|gb|EGB89306.1| hydrogenase 4 subunit H [Escherichia coli MS 117-3]
 gi|324118168|gb|EGC12065.1| 4Fe-4S binding domain-containing protein [Escherichia coli E1167]
          Length = 179

 Score = 82.5 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 58/138 (42%), Gaps = 15/138 (10%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +      +R       T+ YPF     SP FRG+  L        +CIAC  C   CPA
Sbjct: 1   MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLM-----PSQCIACGACA--CPA 50

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A+TI++  + +        + + + +CIYCG C+E CP  AI    NFE     + +LY
Sbjct: 51  NALTIQTDDQQNS-----RTWQLYLRRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 105

Query: 136 YDKERLLNNGDRWESEIV 153
                 L    R E    
Sbjct: 106 TRATFHLQRCSRCERPFA 123


>gi|146304647|ref|YP_001191963.1| NADH dehydrogenase subunit I [Metallosphaera sedula DSM 5348]
 gi|145702897|gb|ABP96039.1| NADH-quinone oxidoreductase, chain I [Metallosphaera sedula DSM
           5348]
          Length = 169

 Score = 82.5 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 13/132 (9%)

Query: 17  VGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
           + A    ++YF K  + T+ YP E  S    +RG   L +       CI C LC  +CPA
Sbjct: 23  LQAVGAGIKYFVKPQRITLKYPDESMSLPTGYRGMIRLYKD-----VCIGCTLCAMVCPA 77

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A+ + +               I+  +C++C  C + CPVDA+ E    + A   R+EL 
Sbjct: 78  DAMKMVTDQGKKFP-------TINYGRCVFCAFCVDICPVDALKETGVHDAAFSNRRELI 130

Query: 136 YDKERLLNNGDR 147
           ++ ER   + D+
Sbjct: 131 FNPERFDQDFDQ 142


>gi|187733421|ref|YP_001881278.1| hydrogenase 4 subunit H [Shigella boydii CDC 3083-94]
 gi|187430413|gb|ACD09687.1| iron-sulfur cluster-binding protein [Shigella boydii CDC 3083-94]
          Length = 179

 Score = 82.5 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/138 (29%), Positives = 58/138 (42%), Gaps = 15/138 (10%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +      +R       T+ YPF     SP FRG+  L        +CIAC  C   CPA
Sbjct: 1   MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLM-----PSQCIACGACT--CPA 50

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A+TI++  + +        + + + +CIYCG C+E CP  AI    NFE     + +LY
Sbjct: 51  NALTIQTDDQQNS-----RTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 105

Query: 136 YDKERLLNNGDRWESEIV 153
                 L    R E    
Sbjct: 106 TRATFHLQRCSRCERPFA 123


>gi|293446842|ref|ZP_06663264.1| hyfH [Escherichia coli B088]
 gi|291323672|gb|EFE63100.1| hyfH [Escherichia coli B088]
 gi|323184455|gb|EFZ69830.1| hydrogenase-4 component H [Escherichia coli 1357]
          Length = 179

 Score = 82.5 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/141 (29%), Positives = 59/141 (41%), Gaps = 15/141 (10%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +      +R       T+ YPF     SP FRG+  L        +CIAC  C   CPA
Sbjct: 1   MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLM-----PSQCIACGACA--CPA 50

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A+TI++  + +        + + + +CIYCG C+E CP  AI    NFE     + +LY
Sbjct: 51  NALTIQTDDQQNS-----RTWQLYLRRCIYCGRCEEVCPTRAIQLTNNFEPTVTNKADLY 105

Query: 136 YDKERLLNNGDRWESEIVRNI 156
                 L    R E    +  
Sbjct: 106 TRATFHLQRCSRCERPFAQQK 126


>gi|15922548|ref|NP_378217.1| NADH dehydrogenase subunit I [Sulfolobus tokodaii str. 7]
 gi|15623338|dbj|BAB67326.1| 169aa long hypothetical NADH-plastoquinone oxidoreductase subunit 9
           [Sulfolobus tokodaii str. 7]
          Length = 169

 Score = 82.5 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 13/137 (9%)

Query: 12  FLKEFVGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70
              + + A    ++Y  +  + T+ YP E  +    +RG   L +       CI C LC 
Sbjct: 18  LFVDHLNAVGTGIKYMIQPQRITLKYPEESLTLPTGYRGMIRLYKD-----ICIGCTLCA 72

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
            ICPA A+ + +       +       I+  +C++CG C + CPVDA+ E    +     
Sbjct: 73  LICPADAMKMVTEGGKKFPS-------INYGRCVFCGFCVDVCPVDALKETRVHDAVFTN 125

Query: 131 RQELYYDKERLLNNGDR 147
           R++L +  +R   + D+
Sbjct: 126 RRDLVFRPDRFDQDFDQ 142


>gi|224538208|ref|ZP_03678747.1| hypothetical protein BACCELL_03099 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224520176|gb|EEF89281.1| hypothetical protein BACCELL_03099 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 166

 Score = 82.5 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/130 (28%), Positives = 55/130 (42%), Gaps = 5/130 (3%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEK--GSTSPRFRGEHALRRYPNGEERCIACKLCE 70
           +   +      +  F + K T  YP  +       RFRG   +      E  CIAC LC+
Sbjct: 14  IGSLLTGMKTTMTVFCRRKVTEQYPENRATLEMFDRFRGTLTMPHNDRNEHHCIACGLCQ 73

Query: 71  AICPAQAITIESGPRCHDGTRRTV---RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
             CP   I + S     +  ++     +Y+ D+  C++C LC  ACP DAI    +FE A
Sbjct: 74  IACPNDTIKVTSEMIETEDGKKKKILAKYEYDLGSCMFCQLCVTACPHDAITFATDFEHA 133

Query: 128 TETRQELYYD 137
              R +L   
Sbjct: 134 VFDRTKLVKT 143


>gi|160886844|ref|ZP_02067847.1| hypothetical protein BACOVA_04858 [Bacteroides ovatus ATCC 8483]
 gi|156107255|gb|EDO09000.1| hypothetical protein BACOVA_04858 [Bacteroides ovatus ATCC 8483]
          Length = 165

 Score = 82.5 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/129 (30%), Positives = 57/129 (44%), Gaps = 5/129 (3%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGS--TSPRFRGEHALRRYPNGEERCIACKLCE 70
           +          ++ +F+ K T  YP  +       RFRG   +    N E RC+AC LC+
Sbjct: 21  ISTLATGMKTSIKVYFRKKVTEQYPENRKELKMFDRFRGTLNMPHNENNEHRCVACGLCQ 80

Query: 71  AICPAQAITIESGPRCHDGTRRTVR---YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
             CP   I + S     +  ++      Y+ D+  C++C LC  ACP DAI    NFE A
Sbjct: 81  MACPNDTIKVTSETVETEDGKKKKILATYEYDLGACMFCQLCVNACPHDAITFDQNFEHA 140

Query: 128 TETRQELYY 136
              R +L  
Sbjct: 141 VFDRTKLVL 149


>gi|238793445|ref|ZP_04637070.1| Hydrogenase-4 component H [Yersinia intermedia ATCC 29909]
 gi|238727218|gb|EEQ18747.1| Hydrogenase-4 component H [Yersinia intermedia ATCC 29909]
          Length = 184

 Score = 82.5 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 41/145 (28%), Positives = 61/145 (42%), Gaps = 13/145 (8%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F   L+      TT+ YPF+    S  FRG+          E+CIAC  C   CPA
Sbjct: 1   MFKLFKTILKV---GDTTVKYPFKPLEVSHGFRGKP-----QYDAEQCIACGACTMACPA 52

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A+T+E+            ++ + + +CI+CG C+E CP  AIV    FE A   + +LY
Sbjct: 53  NALTMETDLASGT-----RQWQLFLGRCIFCGRCEEVCPTRAIVLSQEFELAVFNKADLY 107

Query: 136 YDKERLLNNGDRWESEIVRNIVTDS 160
                 L +  + +         D 
Sbjct: 108 QRASFTLTHCQQCQQPFAPKKEVDY 132


>gi|239618411|ref|YP_002941733.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Kosmotoga
           olearia TBF 19.5.1]
 gi|239507242|gb|ACR80729.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Kosmotoga
           olearia TBF 19.5.1]
          Length = 604

 Score = 82.5 bits (202), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 51/133 (38%), Gaps = 6/133 (4%)

Query: 7   NVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIAC 66
           N   +F K F     +  +Y F    TI  P      + R+RG H      N  E C  C
Sbjct: 2   NAKEIFKKTFW-GPTIAWKYLFAKPITITVPKVYREAAERYRGFHI-----NDWELCTGC 55

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
             C  ICP  AI +       +   +  +  ID  +C +CG+C + C   ++     +  
Sbjct: 56  GTCSKICPTDAIKMIPVDIETEPGEKAEKPAIDYGRCSFCGMCVDICTTGSLKMTREYIH 115

Query: 127 ATETRQELYYDKE 139
            ++     ++  E
Sbjct: 116 ISDNPNTFFFMPE 128


>gi|242399878|ref|YP_002995303.1| Membrane-bound NADP+-reducing complex MBX, subunit MbxN
           (dehydrogenase subunit) [Thermococcus sibiricus MM 739]
 gi|242266272|gb|ACS90954.1| Membrane-bound NADP+-reducing complex MBX, subunit MbxN
           (dehydrogenase subunit) [Thermococcus sibiricus MM 739]
          Length = 202

 Score = 82.1 bits (201), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 10/113 (8%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80
           +L ++Y FK   TI  P+E    + ++RG H L       + CI C +C  ICPA+AI +
Sbjct: 24  WLSIKYLFKKPVTIKIPYEPTQIAEKYRGFHTLNW-----KTCIGCNMCGQICPARAIEM 78

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
                      +     ID  +C +C  C + CP  A+    ++   TE ++E
Sbjct: 79  TWIE-----GEKRAHPKIDYGRCTFCQFCVDVCPTGALGHVEHYLLTTEWKEE 126


>gi|290558868|gb|EFD92259.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Candidatus
           Parvarchaeum acidophilus ARMAN-5]
 gi|290559404|gb|EFD92736.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Candidatus
           Parvarchaeum acidophilus ARMAN-5]
          Length = 193

 Score = 82.1 bits (201), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 42/132 (31%), Positives = 62/132 (46%), Gaps = 8/132 (6%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           +KE + AF   L+     + T  YP +      R RG  +L       E CI C+LC  I
Sbjct: 3   IKETIEAFGYGLKESITKRATYPYPDKPLPIQKRSRGMLSL-----DLENCIGCELCYKI 57

Query: 73  CPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           CP+ AI ++       G     R +   ID  KCI+CGLC E CP   +     ++ +T+
Sbjct: 58  CPSDAIRMQKIDFKEAGFHTNARSEAPAIDFNKCIFCGLCSEICPPKVLHHTHKYDISTD 117

Query: 130 TRQELYYDKERL 141
            R+EL +   +L
Sbjct: 118 DRKELIHSPFKL 129


>gi|170289768|ref|YP_001736584.1| NADH dehydrogenase subunit I [Candidatus Korarchaeum cryptofilum
           OPF8]
 gi|170173848|gb|ACB06901.1| NADH dehydrogenase subunit I [Candidatus Korarchaeum cryptofilum
           OPF8]
          Length = 163

 Score = 82.1 bits (201), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 7/126 (5%)

Query: 17  VGAFFLCLRYFF-KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
           + A F  ++Y F   + TI YP E       +RG           + CI C LC  +CPA
Sbjct: 10  LKAIFTGMKYLFLGPRLTIMYPDEIEDLPEDYRGMIE-----YDWDSCIKCSLCAMVCPA 64

Query: 76  QAITIE-SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134
            A+ +  S        +   R  I+  +C++CG C + CP +++      + A  T +E 
Sbjct: 65  DAMKMYVSKEESEKEGKVVKRPGINYTRCVFCGFCVDICPTNSLRFTKVHDVAYYTYEEQ 124

Query: 135 YYDKER 140
            Y  + 
Sbjct: 125 IYPPQE 130


>gi|90410735|ref|ZP_01218750.1| hydrogenase 4 Fe-S subunit [Photobacterium profundum 3TCK]
 gi|90328366|gb|EAS44664.1| hydrogenase 4 Fe-S subunit [Photobacterium profundum 3TCK]
          Length = 182

 Score = 82.1 bits (201), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 13/122 (10%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                   ++     + T  YPF     S  FRG+  L        +C++C  C   CPA
Sbjct: 1   MFKLLKTVIKT---GEATTKYPFAPLEISGDFRGKPEL-----DANQCLSCGACTRACPA 52

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A+ +E+  +         R+++ M +CIYCG C+E CP  AI    NFE A   +++LY
Sbjct: 53  NALIMETDVKAGT-----RRWELSMARCIYCGRCEEVCPTKAITLSQNFELAVTRKEDLY 107

Query: 136 YD 137
            D
Sbjct: 108 ED 109


>gi|257053292|ref|YP_003131125.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Halorhabdus
           utahensis DSM 12940]
 gi|256692055|gb|ACV12392.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Halorhabdus
           utahensis DSM 12940]
          Length = 119

 Score = 82.1 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/112 (32%), Positives = 52/112 (46%), Gaps = 11/112 (9%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            L+   K + T++YP  K +   RFRG           + C  C +CE  C A AI + +
Sbjct: 11  ALKTLGKDRATVSYPKNKRTLPDRFRGAVEF-----DPDPCTGCGMCERHCAADAIVVGT 65

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134
               +      V       KC++CG C+E+CP DAIV G +FE A   R+  
Sbjct: 66  DDDGNVTWEYDV------AKCMFCGQCEESCPTDAIVMGKDFELADSDRESF 111


>gi|254172023|ref|ZP_04878699.1| NADH dehydrogenase subunit i [Thermococcus sp. AM4]
 gi|214033919|gb|EEB74745.1| NADH dehydrogenase subunit i [Thermococcus sp. AM4]
          Length = 226

 Score = 82.1 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 6/113 (5%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80
           ++ ++Y FK   TI  PFEK   +P++RG H L       ++C+ C  C  ICPA+AI +
Sbjct: 20  WMGIKYLFKKPVTIKIPFEKIEPAPKYRGFHTL-----DWKKCVGCNFCGQICPARAIEM 74

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
                     +R     +D  +C +C  C + CP  A+     +   T+  ++
Sbjct: 75  TWLEVDGKMEKRP-HPKVDYGRCTFCQFCVDVCPTGALGFSEAYILTTDGTED 126


>gi|57641149|ref|YP_183627.1| NADH dehydrogenase subunit I [Thermococcus kodakarensis KOD1]
 gi|57159473|dbj|BAD85403.1| membrane bound hydrogenase, 4Fe-4S cluster-binding subunit
           [Thermococcus kodakarensis KOD1]
          Length = 217

 Score = 82.1 bits (201), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 6/108 (5%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80
           ++ ++Y FK   TI  P+EK   +P++RG H L       ++C+ C  C  ICPA+AI +
Sbjct: 24  WMGIKYLFKKPVTIKIPYEKIEPAPKYRGFHTL-----DWKKCVGCNFCGQICPARAIEM 78

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
                      R     +D  +C +C  C + CP  A+    N+   T
Sbjct: 79  TWIEVNGHIATRP-HPKVDYGRCTFCQFCVDVCPTGALGFSENYYLTT 125


>gi|332702765|ref|ZP_08422853.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332552914|gb|EGJ49958.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 224

 Score = 81.7 bits (200), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/153 (22%), Positives = 58/153 (37%), Gaps = 28/153 (18%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE--ERCIACKLCE 70
           +   +    +  + FF+ + T++YP +       FRG   L   P      RCI C LC 
Sbjct: 14  MWSLIVGLRVTTKNFFQPQVTVHYPRQSVDNLSTFRGHIELVGQPKDPATPRCITCMLCA 73

Query: 71  AICPAQAITIESGPRCHDGTRRTVR--------------------------YDIDMIKCI 104
            +CP+Q I+I           + +                           ++++   C 
Sbjct: 74  TVCPSQCISITKAKAPPPEPAKKLPDHAEGPLVPPEKAEPPKAKVIKTPGSFELNFNTCS 133

Query: 105 YCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
            CG+C + CPV ++    +   A  +RQE  YD
Sbjct: 134 LCGMCVQNCPVSSLRFSTDVYAAGFSRQEFEYD 166


>gi|294674396|ref|YP_003575012.1| proton-translocating NADH-quinone oxidoreductase I subunit
           [Prevotella ruminicola 23]
 gi|294472661|gb|ADE82050.1| putative proton-translocating NADH-quinone oxidoreductase, I
           subunit [Prevotella ruminicola 23]
          Length = 181

 Score = 81.7 bits (200), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 43/158 (27%), Positives = 58/158 (36%), Gaps = 21/158 (13%)

Query: 13  LKEFVGAFFLCLRY----FFKAKTTINYPFEK---GSTSPRFRGEHALRRYPNGEERCIA 65
           LK       +  +     FF  K+T  YP  +      S R RG    +R  +G  +C A
Sbjct: 15  LKTLATGMKITWKEYFKDFFTNKSTEQYPENRKTTLHVSKRHRGRLTFKRNEDGSYKCTA 74

Query: 66  CKLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           C LCE  CP   I     +   P      +    Y  D+  C++C LC  AC  DAI   
Sbjct: 75  CTLCEKACPNGTIKITAHMAEDPETGKKKKVLDDYAYDLGDCMFCQLCTNACNFDAIEFT 134

Query: 122 PNFEFATETRQELYYDKER----------LLNNGDRWE 149
            +FE A   R  L                L+  G  W+
Sbjct: 135 NDFENAVFDRSRLVLHLNEEVYAGGSLPNLIEGGAEWQ 172


>gi|326799613|ref|YP_004317432.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Sphingobacterium sp. 21]
 gi|326550377|gb|ADZ78762.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Sphingobacterium sp. 21]
          Length = 187

 Score = 81.7 bits (200), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 57/149 (38%), Gaps = 34/149 (22%)

Query: 17  VGAFFLCLRYFFKAK--------------------TTINYPFEKGSTSPRFRGEHALRRY 56
           +    + L++FF A+                    TTI YP ++       R      + 
Sbjct: 13  LKGLSITLKHFFAARKARKELDIKQENYFEKQEGVTTIQYPKQEIPIPEVAR-----YQL 67

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTR---------RTVRYDIDMIKCIYCG 107
               + CI C LC   CP   I+IE+        +            ++DIDM KC+YCG
Sbjct: 68  DVEIDDCIVCDLCAKACPVDCISIEAIKATEAIGKTSDGSVKRLYAAKFDIDMAKCMYCG 127

Query: 108 LCQEACPVDAIVEGPNFEFATETRQELYY 136
           LC   CP + I    N++ +     +L Y
Sbjct: 128 LCTVVCPTECITMTDNYDRSFSNLSDLIY 156


>gi|7649018|gb|AAF65736.1|AF228525_6 F420H2 dehydrogenase subunit FpoI [Methanosarcina mazei Go1]
          Length = 136

 Score = 81.7 bits (200), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 7/128 (5%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +      L+   K + T   P  +   S RFRG   L      + +CI C +C   CP 
Sbjct: 2   VLKNIKYALKNIPKERVTRLCPEVESPLSERFRGLQTL-----DKSKCIGCGICANTCPN 56

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF--EFATETRQE 133
            AI I   P      ++     ID+  C++CGLC + CP  A+  G  +         ++
Sbjct: 57  SAIKIVKAPIAPGSEKKRWFPQIDIGHCLFCGLCIDQCPKGALSSGKEYCKGMVKWAHKD 116

Query: 134 LYYDKERL 141
           L    E+L
Sbjct: 117 LLMTPEKL 124


>gi|119719100|ref|YP_919595.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermofilum pendens Hrk 5]
 gi|119524220|gb|ABL77592.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermofilum
           pendens Hrk 5]
          Length = 194

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 13/119 (10%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 + LR       T+ YPF+       FRG+  +         C+ C  C  +CP 
Sbjct: 3   IRQILKIALRE---GVATLEYPFKPEEAPEDFRGKPEI-----DPSICMGCGACANVCPP 54

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134
            AIT           R    + I   +CI+CG C+EACP+ AI +   +E A++TR++L
Sbjct: 55  DAITCVDDLE-----RGLRTWKIFYGRCIFCGRCEEACPLSAIRQSKEYELASKTREDL 108


>gi|194379558|dbj|BAG63745.1| unnamed protein product [Homo sapiens]
          Length = 171

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 49/110 (44%), Positives = 56/110 (50%), Gaps = 4/110 (3%)

Query: 1   MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59
           M+ +       L   E      + L Y F+   TINYPFEKG  SPR RGEHALRRYP+G
Sbjct: 48  MKSVTDRAARTLLWTELFRGLGMTLSYLFREPATINYPFEKGPLSPRLRGEHALRRYPSG 107

Query: 60  EERCIACKLCEAICPAQ---AITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
           EERCIACKLCEAICPAQ               G         +   C+ C
Sbjct: 108 EERCIACKLCEAICPAQVSPCPNRPPRQPLPLGEGGQAALGPNPSPCLMC 157


>gi|90407578|ref|ZP_01215759.1| hydrogenase 4 Fe-S subunit [Psychromonas sp. CNPT3]
 gi|90311281|gb|EAS39385.1| hydrogenase 4 Fe-S subunit [Psychromonas sp. CNPT3]
          Length = 206

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 37/103 (35%), Positives = 51/103 (49%), Gaps = 10/103 (9%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
           TI YPF        FRG+       +  E+CIAC  C   CPA A+ +E+    +     
Sbjct: 16  TIQYPFAPLEVCDDFRGKPE-----HDPEQCIACAACTQACPANALIMETDTENNL---- 66

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
             R++I   +CIYCG C+E CP +AI     FE A   + +LY
Sbjct: 67  -RRWEISFARCIYCGRCEEVCPTNAITLSQEFELAVTNKADLY 108


>gi|124027084|ref|YP_001012404.1| NADH-ubiquinone oxidoreductase subunit 8 [Hyperthermus butylicus
           DSM 5456]
 gi|123977778|gb|ABM80059.1| NADH-ubiquinone oxidoreductase subunit 8 [Hyperthermus butylicus
           DSM 5456]
          Length = 181

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 44/147 (29%), Positives = 66/147 (44%), Gaps = 18/147 (12%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V A    LR   K   T+ YP  +      FRG           ++CI C LC  ICPA+
Sbjct: 34  VSAISAALRRASKKPMTLMYPTVEEEKPQLFRGFIL-----YDYDKCIGCSLCAQICPAR 88

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
           AI +   P       + +R   D+ +CIYCGLC + CP DA++    F+   E  +++ +
Sbjct: 89  AIKMYRVP-----GDKRLRPGYDVGRCIYCGLCTDICPTDALILSDRFDHVFEKLEDMIF 143

Query: 137 DKERLLNNGDRWESEIVRNIVTDSPYR 163
           D          W ++I + I  + P R
Sbjct: 144 DP-------IDW-AQISKKIREEKPTR 162


>gi|193216257|ref|YP_001997456.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Chloroherpeton thalassium ATCC 35110]
 gi|193089734|gb|ACF15009.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Chloroherpeton thalassium ATCC 35110]
          Length = 268

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 40/179 (22%), Positives = 56/179 (31%), Gaps = 43/179 (24%)

Query: 14  KEFVGAFFLCLRYFFKAK--------------------TTINYPFEKGSTSPRFRGEHAL 53
              +    +  ++   A                      T+ YP E   T    R     
Sbjct: 13  TTILTGLGITWKHLLNATKRKGFAGIAEDHYFNQVDGLVTLQYPSEAVPTPSFAR----- 67

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHD-------------GTRRTVRYDIDM 100
            R  N  + CI C  C   CP + ITI S     D                    +DIDM
Sbjct: 68  YRLHNEIDDCIGCDQCAKACPVKCITIGSFKATPDDIEILGTTSDGTKKRLWIPVFDIDM 127

Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY-----DKERLLNNGDRWESEIVR 154
            KC++CGLC   CP + +   P  +F    R+ L Y      KE   +   + E     
Sbjct: 128 GKCMFCGLCTYPCPTECLTMTPVHDFTEFDREHLIYHFGNMTKEMEADKRKKLEQFEAE 186


>gi|67539066|ref|XP_663307.1| hypothetical protein AN5703.2 [Aspergillus nidulans FGSC A4]
 gi|40743606|gb|EAA62796.1| hypothetical protein AN5703.2 [Aspergillus nidulans FGSC A4]
          Length = 64

 Score = 81.3 bits (199), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 43/64 (67%), Positives = 50/64 (78%)

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
           M KCIYCG CQE+CPVDAIVE  N E+ATETR+EL Y+KE+LL NGD+WE EI      D
Sbjct: 1   MTKCIYCGYCQESCPVDAIVETANAEYATETREELLYNKEKLLANGDKWEPEIAAAARAD 60

Query: 160 SPYR 163
           +PYR
Sbjct: 61  APYR 64


>gi|218886693|ref|YP_002436014.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218757647|gb|ACL08546.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 207

 Score = 80.9 bits (198), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 52/151 (34%), Gaps = 26/151 (17%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYP--FEKGSTSPRFRGEHALRRYPNGE--ERCIACKL 68
           L   V    +  + F K   T++YP        +  FRG   L          +CIAC L
Sbjct: 11  LWSLVVGLGITGKEFCKPGVTVHYPRAEVTPEAAASFRGPIELIGLDKDPAKPKCIACML 70

Query: 69  CEAICPAQAITIESGPRCHD----------------------GTRRTVRYDIDMIKCIYC 106
           C + CP+  IT+   P                            +    +  D   C  C
Sbjct: 71  CVSACPSNCITVTRAPTPKPTPEELKAMAEAEARGEKPKKPAPPKAPGTWTYDFSLCSLC 130

Query: 107 GLCQEACPVDAIVEGPNFEFATETRQELYYD 137
           G C EACPVD+I    +       R++  +D
Sbjct: 131 GSCVEACPVDSIGFSHDIYMVGTKREDFVFD 161


>gi|194702414|gb|ACF85291.1| unknown [Zea mays]
          Length = 159

 Score = 80.9 bits (198), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/65 (64%), Positives = 48/65 (73%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           +F  +++ LFL E V    L L+YFF    TINYPFEKG  SPRFRGEHALRRY +GEER
Sbjct: 64  VFERSINTLFLTEMVRGLMLTLKYFFDRNVTINYPFEKGPLSPRFRGEHALRRYESGEER 123

Query: 63  CIACK 67
           CIACK
Sbjct: 124 CIACK 128


>gi|126460652|ref|YP_001056930.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum calidifontis JCM 11548]
 gi|126250373|gb|ABO09464.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           calidifontis JCM 11548]
          Length = 132

 Score = 80.9 bits (198), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 11/124 (8%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           +  F + L+  F+   T+ +P E+    P  RG        N + +CI+C+LCEA+CPA+
Sbjct: 5   IKLFAVALKNLFEKPWTVRWPEERRDYGPAPRGFIV-----NDKSKCISCQLCEAVCPAK 59

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
           AI                   ID  +CI CG C +ACP  ++    + E   ++      
Sbjct: 60  AIKFHLEEDGKRYPG------IDWGRCILCGYCVDACPTGSLQHTAHIEITWDSLDTYKK 113

Query: 137 DKER 140
            KE 
Sbjct: 114 PKEM 117


>gi|325121088|gb|ADY80611.1| NADH dehydrogenase I chain I [Acinetobacter calcoaceticus PHEA-2]
          Length = 119

 Score = 80.9 bits (198), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 1/77 (1%)

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
               CP   I+++      DG      + I+  +CI+CG+C+EACP  AI   P+FE   
Sbjct: 5   VAVACPVGCISLQKAE-TEDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQLTPDFELGE 63

Query: 129 ETRQELYYDKERLLNNG 145
             RQ+L Y+KE LL +G
Sbjct: 64  YVRQDLVYEKENLLISG 80


>gi|89074819|ref|ZP_01161273.1| hydrogenase 4 Fe-S subunit [Photobacterium sp. SKA34]
 gi|89049394|gb|EAR54956.1| hydrogenase 4 Fe-S subunit [Photobacterium sp. SKA34]
          Length = 182

 Score = 80.9 bits (198), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 39/145 (26%), Positives = 61/145 (42%), Gaps = 13/145 (8%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                   L+     + T  YPF     +  FRG+  L       ++C++C  C   CPA
Sbjct: 1   MFKLLKTVLKT---GEVTTKYPFSPLEVNEDFRGKPEL-----DADQCLSCAACMRACPA 52

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A+ +E+  +         R+++ + +CIYCG C+E CP  AI    NFE A   + +LY
Sbjct: 53  NALIMETDVKAGT-----RRWELSLARCIYCGRCEEVCPTHAIKLSQNFELAVTNKADLY 107

Query: 136 YDKERLLNNGDRWESEIVRNIVTDS 160
                 L N    E   V   + + 
Sbjct: 108 ESATFQLENCCECERPFVARKLLEY 132


>gi|298530779|ref|ZP_07018181.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510153|gb|EFI34057.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 277

 Score = 80.5 bits (197), Expect = 6e-14,   Method: Composition-based stats.
 Identities = 37/168 (22%), Positives = 52/168 (30%), Gaps = 34/168 (20%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE- 60
              R  +    L        +    FF+   T++YP +   +   +RG   L        
Sbjct: 76  STIRKTIKG--LWSLGVGLKVTSVNFFRPPVTVHYPRQVVPSLEGYRGHVELVPSAEDPG 133

Query: 61  -ERCIACKLCEAICPAQAITIESGPRCHD------------------------------G 89
             RCI C  C  ICP   I+I+   +                                  
Sbjct: 134 ASRCIGCGACVRICPGACISIKVSHKRPHLAPKKTGKPPDHDQGHFLIPMPKARALPGIA 193

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
            R    + ++   C  CGLC E CP  A+    N   A  TR E  YD
Sbjct: 194 RRSPTSFKLNYNYCSLCGLCVETCPAGALAFSSNIYLAGYTRNEFKYD 241


>gi|78186623|ref|YP_374666.1| NADH dehydrogenase I, 23 kDa subunit [Chlorobium luteolum DSM 273]
 gi|78166525|gb|ABB23623.1| NADH dehydrogenase I, 23 kDa subunit [Chlorobium luteolum DSM 273]
          Length = 215

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 39/181 (21%), Positives = 57/181 (31%), Gaps = 42/181 (23%)

Query: 14  KEFVGAFFLCLRYFFK--------------------AKTTINYPFEKGSTSPRFRGEHAL 53
                   + L++FF                        T+ YP E   T    R     
Sbjct: 18  TTIATGMGITLKHFFNAVKRKGDAGIDDVDYFGQVDGLVTLQYPREAVPTPSNGR----- 72

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCH-------------DGTRRTVRYDIDM 100
            R  N  + CI C  C   CP   I +E+                          +DID 
Sbjct: 73  YRLHNDIDDCIGCGQCVRACPVSCIEMETIKVMPEDLAACGKTSGGQQKKFWVPVFDIDT 132

Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDS 160
            KC+ CG+C   CP + +   P  +F+   R  L Y       N  R E+E  +  V ++
Sbjct: 133 AKCMTCGICTTVCPTECLRHTPVADFSDFDRWNLVYH----FGNLTRHEAEAKKRKVEEA 188

Query: 161 P 161
            
Sbjct: 189 Q 189


>gi|227537461|ref|ZP_03967510.1| possible NADH dehydrogenase i subunit [Sphingobacterium
           spiritivorum ATCC 33300]
 gi|227242735|gb|EEI92750.1| possible NADH dehydrogenase i subunit [Sphingobacterium
           spiritivorum ATCC 33300]
          Length = 189

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 37/170 (21%), Positives = 59/170 (34%), Gaps = 36/170 (21%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAK--------------------TTINYPFEK 40
           M + +  ++ L     V    L +R+   A+                     T+ +P +K
Sbjct: 1   MMLIKTTINALLTA--VKGLSLTVRHLIGARRARHELDITKDHYFDKQDGVATVQFPKQK 58

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR--------- 91
                  R +  +         CI C LC   CP   I I S        +         
Sbjct: 59  MPIPEVARYQLEVEIDD-----CIVCDLCAKACPVDCIDILSIKSPEAIGKTSDGSVKRL 113

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERL 141
              ++DIDM KC+YCGLC   CP + I     ++ +T    +L Y    +
Sbjct: 114 YAEKFDIDMAKCMYCGLCTVVCPTECITMTNQYDRSTSKLTDLIYGFSDM 163


>gi|170289382|ref|YP_001739620.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermotoga sp. RQ2]
 gi|170176885|gb|ACB09937.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermotoga
           sp. RQ2]
          Length = 615

 Score = 80.5 bits (197), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 8/125 (6%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFE-KGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           K+F        ++  +   TI  P + +   S R+RG H      N   +CI C  C  I
Sbjct: 9   KDFFAPLK-AWKFLVRKPVTIEVPNKIRREASERYRGFHV-----NDWGKCIGCGTCAKI 62

Query: 73  CPAQAITIESGPRCHDGTRR-TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           CP  AIT+   P       +   R  ID  +C +C LC + C   ++     +   +E  
Sbjct: 63  CPTDAITMVEVPDLTQEDGKLPQRPVIDYGRCSFCALCVDICTTGSLKMTREYIHISEDP 122

Query: 132 QELYY 136
           ++  +
Sbjct: 123 EDFIF 127


>gi|145298795|ref|YP_001141636.1| hydrogenase-4 component H [Aeromonas salmonicida subsp. salmonicida
           A449]
 gi|142851567|gb|ABO89888.1| hydrogenase-4 component H [Aeromonas salmonicida subsp. salmonicida
           A449]
          Length = 185

 Score = 80.5 bits (197), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 38/120 (31%), Positives = 54/120 (45%), Gaps = 13/120 (10%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +  F   L+       T  YPF     +  FRG+   +        CIAC  C   CPA
Sbjct: 1   MIKLFKTILK---AGTPTAKYPFAPIDVNRDFRGKPKYQADQ-----CIACAACTKACPA 52

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A+ +E      +     +R++I M +CI+CG C+E CP  AI   P FE A   + +LY
Sbjct: 53  NALVMEVDMETGE-----LRWEISMARCIFCGRCEEVCPTHAIALSPEFELAVTNKADLY 107


>gi|15643973|ref|NP_229022.1| putative oxidoreductase [Thermotoga maritima MSB8]
 gi|4981770|gb|AAD36292.1|AE001778_13 glutamate synthase, beta subunit [Thermotoga maritima MSB8]
          Length = 618

 Score = 80.5 bits (197), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 8/125 (6%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFE-KGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           K+F        ++  +   TI  P + +   S R+RG H      N   +CI C  C  I
Sbjct: 12  KDFFAPLK-AWKFLVRKPVTIEVPNKIRREASERYRGFHV-----NDWGKCIGCGTCAKI 65

Query: 73  CPAQAITIESGPRCHDGTRR-TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           CP  AIT+   P       +   R  ID  +C +C LC + C   ++     +   +E  
Sbjct: 66  CPTDAITMVEVPDLTQEDGKLPQRPVIDYGRCSFCALCVDICTTGSLKMTREYIHISEDP 125

Query: 132 QELYY 136
           ++  +
Sbjct: 126 EDFIF 130


>gi|90426040|ref|YP_534410.1| formate hydrogenlyase complex iron-sulfur subunit [Rhodopseudomonas
           palustris BisB18]
 gi|90108054|gb|ABD90091.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodopseudomonas palustris
           BisB18]
          Length = 189

 Score = 80.5 bits (197), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 11/116 (9%)

Query: 20  FFLCLRYFFK-AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78
            F  L+  F+  + T+ YPF     S  FRG+       +  E+CIAC  C   CPA A+
Sbjct: 1   MFKLLKEVFRTGEATVKYPFAPLEISKDFRGKPE-----HNAEQCIACAACTVACPANAL 55

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134
           T+E+             + I   +C++CG C+E CP  AI   P+FE A   + +L
Sbjct: 56  TMETDLVAGT-----RTWSISYGRCVFCGRCEEVCPTQAIKLTPDFELAVANKADL 106


>gi|167752195|ref|ZP_02424322.1| hypothetical protein ALIPUT_00437 [Alistipes putredinis DSM 17216]
 gi|167660436|gb|EDS04566.1| hypothetical protein ALIPUT_00437 [Alistipes putredinis DSM 17216]
          Length = 145

 Score = 80.1 bits (196), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 40/143 (27%), Positives = 61/143 (42%), Gaps = 8/143 (5%)

Query: 6   CNVSFLF--LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFR--GEHALRRYPNGEE 61
             +  LF  ++  +    +  + F   K T  YP  + +     R  G   +     G+ 
Sbjct: 3   NYIQGLFHGIRTLLTGLKVTGKEFVTPKITEQYPENRATLKMNERFCGTLTMPHDAEGKN 62

Query: 62  RCIACKLCEAICPAQAIT----IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           +C+AC LC+A CP   I       +        RR V+Y+ D+  C++C LC  ACP DA
Sbjct: 63  KCVACGLCQAACPNGTIKITTETVTDEETGKPRRRLVKYEYDLGACMFCHLCVNACPHDA 122

Query: 118 IVEGPNFEFATETRQELYYDKER 140
           I     FE A  TR +L     +
Sbjct: 123 IRFDTAFEHAVYTRDKLVKTLNK 145


>gi|300727163|ref|ZP_07060581.1| NADH-ubiquinone oxidoreductase, Nqo9 subunit (nqo9) [Prevotella
           bryantii B14]
 gi|299775549|gb|EFI72141.1| NADH-ubiquinone oxidoreductase, Nqo9 subunit (nqo9) [Prevotella
           bryantii B14]
          Length = 193

 Score = 80.1 bits (196), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 37/150 (24%), Positives = 60/150 (40%), Gaps = 22/150 (14%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKG---STSPRFRGEHALRRYPN----------- 58
           +K       + L+ +F  K+T  YP  +      S R RG    +R  +           
Sbjct: 16  MKTLATGLKITLKEYFTPKSTEQYPENRLTTLHVSKRHRGRLVFKRVTDADLQDPKLQAR 75

Query: 59  ----GEERCIACKLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
               G+ +C AC +CE  CP + I     ++  P      +    Y  D+  C++C LC 
Sbjct: 76  GLKVGDYKCTACTMCEKACPNETIKITAHMQEDPETGKKKKVLDDYLYDLGDCMFCQLCV 135

Query: 111 EACPVDAIVEGPNFEFATETRQELYYDKER 140
            AC  DAI    +FE +   R +L    ++
Sbjct: 136 NACNFDAIEFTNDFENSVFDRSKLALHLDK 165


>gi|119356794|ref|YP_911438.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Chlorobium phaeobacteroides DSM 266]
 gi|119354143|gb|ABL65014.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Chlorobium
           phaeobacteroides DSM 266]
          Length = 228

 Score = 80.1 bits (196), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 46/192 (23%), Positives = 65/192 (33%), Gaps = 43/192 (22%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFF---KAK-----------------TTINYPFEK 40
           M  +  N+             + L++FF   K K                  T+ YP E 
Sbjct: 1   MSEYFRNIKTGA-STIATGMGITLQHFFNAVKRKGDAGVGDSNYFGQVDGLVTLQYPREA 59

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH------------- 87
             T    R         N  + CI C  CE  CP   ITIE+                  
Sbjct: 60  IPTPANGRYRLE-----NNIDDCIGCAQCERACPIGCITIETIKVTADDLGVCGKTSGGQ 114

Query: 88  DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDR 147
                   +DID  KC+ CGLC   CP + ++  P  +F+   RQ L Y       N  R
Sbjct: 115 QKKFWLPVFDIDTAKCMTCGLCTVVCPTECLIHSPVSDFSEFDRQNLVYH----FGNLTR 170

Query: 148 WESEIVRNIVTD 159
            E+E  +  + +
Sbjct: 171 LEAEAKKRKLQE 182


>gi|297526160|ref|YP_003668184.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Staphylothermus hellenicus DSM 12710]
 gi|297255076|gb|ADI31285.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Staphylothermus hellenicus DSM 12710]
          Length = 154

 Score = 80.1 bits (196), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 42/129 (32%), Positives = 58/129 (44%), Gaps = 8/129 (6%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP 74
            + A  L  +Y FK   T  YP+ E+   + + R  H L        RCI C+ C+  CP
Sbjct: 2   VLKAVLLGFKYLFKKPYTRMYPYKEEAYVTSKTRARHILYMD-----RCIGCRACQLACP 56

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP--NFEFATETRQ 132
           A AI +      +   R+ +   ID  +C YCGLC EACPV+A+           TE + 
Sbjct: 57  ADAIKMYHVEGDYPKNRKKIFPGIDYSRCTYCGLCVEACPVNALAMTNYTMEHLITEDKA 116

Query: 133 ELYYDKERL 141
              Y  E L
Sbjct: 117 TTLYTPEML 125


>gi|126465554|ref|YP_001040663.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Staphylothermus marinus F1]
 gi|126014377|gb|ABN69755.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Staphylothermus marinus F1]
          Length = 153

 Score = 80.1 bits (196), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 42/129 (32%), Positives = 58/129 (44%), Gaps = 8/129 (6%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP 74
            + A  L  +Y FK   T  YP+ E+   + + R  H L        RCI C+ C+  CP
Sbjct: 2   VLKAVLLGFKYLFKKPYTRMYPYKEEAYVTSKTRARHILYMD-----RCIGCRACQLACP 56

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP--NFEFATETRQ 132
           A AI +      +   R+ +   ID  +C YCGLC EACPV+A+           TE + 
Sbjct: 57  ADAIKMYHVEGDYPKNRKKIFPGIDYSRCTYCGLCVEACPVNALAMTNYTMEHLITEDKA 116

Query: 133 ELYYDKERL 141
              Y  E L
Sbjct: 117 TTLYTPEML 125


>gi|189346378|ref|YP_001942907.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chlorobium
           limicola DSM 245]
 gi|189340525|gb|ACD89928.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chlorobium
           limicola DSM 245]
          Length = 204

 Score = 79.8 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 42/189 (22%), Positives = 61/189 (32%), Gaps = 43/189 (22%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFK--------------------AKTTINYPFEK 40
           M  +  N+    +        + L++FF                        T+ YP E 
Sbjct: 1   MSEYFSNIKTGAVT-IATGMSITLKHFFNAIHRKGDAGIDDADYFRQVDGLCTLQYPREA 59

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH------------- 87
                  R         N  E CI C  CE  CP   I IE+                  
Sbjct: 60  VPVPLNARYRL-----YNDIEDCIGCGQCERACPVTCIAIETIKVVPEDLAVCGKTSGGQ 114

Query: 88  DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDR 147
                   +DID+ KC+ CG+C   CP + +V  P  +F+   RQ + Y       N  R
Sbjct: 115 QKKFWVPVFDIDVAKCMTCGICVSVCPTECLVHTPVSDFSEFDRQNMIYH----FGNLSR 170

Query: 148 WESEIVRNI 156
            E+E  +  
Sbjct: 171 LEAEAKKRK 179


>gi|212223633|ref|YP_002306869.1| NADH dehydrogenase subunit I [Thermococcus onnurineus NA1]
 gi|212008590|gb|ACJ15972.1| membrane bound hydrogenase [Thermococcus onnurineus NA1]
          Length = 232

 Score = 79.8 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 6/113 (5%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80
           ++ L+Y FK   TI  P+E+   +  +RG H L       ++C+ C  C  ICPA+AI +
Sbjct: 23  WMGLKYLFKKPVTIKIPYERVQIAKDYRGFHTL-----DWKKCVGCNFCGQICPARAIEM 77

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
                     +R     ID  +C +C  C + CP  A+    N+   TE + E
Sbjct: 78  TWIEVDGKMEKRP-HPKIDYGRCTFCEFCVDVCPPGALGFIENYILTTEWKDE 129


>gi|294634802|ref|ZP_06713327.1| formate hydrogenlyase subunit 6 [Edwardsiella tarda ATCC 23685]
 gi|291091793|gb|EFE24354.1| formate hydrogenlyase subunit 6 [Edwardsiella tarda ATCC 23685]
          Length = 185

 Score = 79.8 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/145 (26%), Positives = 60/145 (41%), Gaps = 13/145 (8%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +      LR+      T+ YP       P FRG+           +CIAC  C A CPA
Sbjct: 1   MLKLLKTALRH---RHATVAYPARPLDVDPNFRGKP-----QYDARQCIACGACTAACPA 52

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A+T+E+            R+ +++ +CI+C  C+E CP  AIV  P FE A   +++L 
Sbjct: 53  NALTMENDVANGL-----RRWSLNLGRCIFCARCEEVCPTAAIVLSPEFELAVWRKEDLQ 107

Query: 136 YDKERLLNNGDRWESEIVRNIVTDS 160
              +  + +     +        D 
Sbjct: 108 QRADFAICHCVECGAPYAAQKEIDY 132


>gi|325578546|ref|ZP_08148646.1| formate hydrogenlyase complex iron-sulfur protein [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325159782|gb|EGC71912.1| formate hydrogenlyase complex iron-sulfur protein [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 215

 Score = 79.8 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 11/117 (9%)

Query: 20  FFLCLRYFFK-AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78
            F  L+  FK    T  YPF+       FRG+  L         CI C  C   CPA A+
Sbjct: 1   MFKLLKTVFKAGDVTTKYPFKPYEVDEDFRGKPELNSDQ-----CIVCAACTIACPANAL 55

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
           T+ + P   D       + + + +CI+CG C+E CP  AI    +FE +   +Q+L+
Sbjct: 56  TMRTDPVTGD-----RTWSLFLGRCIFCGRCEEVCPTKAIRLSQDFELSVTNKQDLF 107


>gi|117617630|ref|YP_857017.1| hydrogenase-4 component H [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
 gi|117559037|gb|ABK35985.1| hydrogenase-4 component H [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 185

 Score = 79.8 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/120 (31%), Positives = 53/120 (44%), Gaps = 13/120 (10%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +  F   L+       T  YPF     +  FRG+   +        CIAC  C   CPA
Sbjct: 1   MIKLFKTILK---AGTPTAKYPFAPYEVNRDFRGKPKYQADQ-----CIACAACTKACPA 52

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A+ +E      +      R++I M +CI+CG C+E CP  AI   P FE A   + +LY
Sbjct: 53  NALVMEVDMETGE-----RRWEISMARCIFCGRCEEVCPTRAIALSPEFELAVTNKADLY 107


>gi|157370669|ref|YP_001478658.1| formate hydrogenlyase complex iron-sulfur subunit [Serratia
           proteamaculans 568]
 gi|157322433|gb|ABV41530.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Serratia
           proteamaculans 568]
          Length = 181

 Score = 79.8 bits (195), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 10/142 (7%)

Query: 19  AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78
              L  +       T+ YP +     P FRG+          ++CIAC  C   CP+ A+
Sbjct: 1   MLKLIKKVLKTGPATVAYPSQPLVVDPNFRGKPE-----YNPQQCIACGACANACPSNAL 55

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
           ++ +       TR TVR+ + + +CI+C  C+E CP  AI     FE A   +++LY   
Sbjct: 56  SMTTDL-----TRGTVRWQLFLGRCIFCARCEEVCPTAAIRLSQQFELAVWRKEDLYEQA 110

Query: 139 ERLLNNGDRWESEIVRNIVTDS 160
           +  + +  +           D 
Sbjct: 111 DFAICHCRQCGKAYASQKEIDY 132


>gi|91773268|ref|YP_565960.1| F420H2 dehydrogenase subunit I [Methanococcoides burtonii DSM 6242]
 gi|91712283|gb|ABE52210.1| F420H2 dehydrogenase subunit I [Methanococcoides burtonii DSM 6242]
          Length = 135

 Score = 79.4 bits (194), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 52/128 (40%), Gaps = 7/128 (5%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +      ++  +K   T  YP      S RFRG   L      + +CI C +C   CP 
Sbjct: 2   VLKNIVRAVKNIYKPPITRRYPEVPTELSDRFRGLQKL-----DKSKCIGCGICANTCPN 56

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT--ETRQE 133
            AI I       D  +      ID+  C++CGLC + CP DA+     +       T +E
Sbjct: 57  SAIKIVRARVNKDSDKTRWFPAIDISHCMFCGLCIDQCPQDALSSTKVYTTGVIRLTHEE 116

Query: 134 LYYDKERL 141
           L Y  + L
Sbjct: 117 LLYTPDML 124


>gi|330829824|ref|YP_004392776.1| hydrogenase-4 component H [Aeromonas veronii B565]
 gi|328804960|gb|AEB50159.1| Hydrogenase-4 component H [Aeromonas veronii B565]
          Length = 185

 Score = 79.4 bits (194), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/120 (31%), Positives = 53/120 (44%), Gaps = 13/120 (10%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +  F   L+       T  YPF     +  FRG+   +        CIAC  C   CPA
Sbjct: 1   MIKLFKTILK---AGTPTAKYPFAPIDVNRDFRGKPKYQADQ-----CIACAACTKACPA 52

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A+ +E      +      R++I M +CI+CG C+E CP  AI   P FE A   + +LY
Sbjct: 53  NALVMEVDMETGE-----RRWEISMARCIFCGRCEEVCPTRAIALSPEFELAVTNKADLY 107


>gi|261345090|ref|ZP_05972734.1| hydrogenase-4 component H [Providencia rustigianii DSM 4541]
 gi|282566774|gb|EFB72309.1| hydrogenase-4 component H [Providencia rustigianii DSM 4541]
          Length = 183

 Score = 79.4 bits (194), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/141 (26%), Positives = 59/141 (41%), Gaps = 12/141 (8%)

Query: 20  FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79
            F  LR       T+ YPF+    +  FRG+          ++CIAC  C + CPA A+T
Sbjct: 4   LFKTLRN--AGTATVKYPFKPLEVAHGFRGKPE-----YDPQQCIACGACISACPANALT 56

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139
           +E+     +      R+ + + +CIYC  C+E CP  AI     FE A   + +LY    
Sbjct: 57  METDLESGE-----RRWQLFLGRCIYCARCEEVCPTRAIHLTEEFETAVMNKADLYMKGT 111

Query: 140 RLLNNGDRWESEIVRNIVTDS 160
             L +  +           + 
Sbjct: 112 FRLQHCRQCGEAFAPKKSVEY 132


>gi|139437056|ref|ZP_01771216.1| Hypothetical protein COLAER_00191 [Collinsella aerofaciens ATCC
           25986]
 gi|133776703|gb|EBA40523.1| Hypothetical protein COLAER_00191 [Collinsella aerofaciens ATCC
           25986]
          Length = 238

 Score = 79.4 bits (194), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/129 (29%), Positives = 57/129 (44%), Gaps = 10/129 (7%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T+ YPF    T+   RG+       +  E CIAC  C   CPA AI +++         
Sbjct: 14  ATVKYPFAPFPTNKDMRGKPE-----HNAELCIACGACGVACPADAIRMDTDLAADT--- 65

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
             + + ID  +CI+CG C+EACP++AI     FE A  ++ +L       L +  R    
Sbjct: 66  --ITWSIDYGRCIFCGRCEEACPMEAIKLTEEFELAVMSKDDLTSKSVYTLEHCSRCGKP 123

Query: 152 IVRNIVTDS 160
              +   D 
Sbjct: 124 FAPHKEIDY 132


>gi|212710434|ref|ZP_03318562.1| hypothetical protein PROVALCAL_01496 [Providencia alcalifaciens DSM
           30120]
 gi|212686854|gb|EEB46382.1| hypothetical protein PROVALCAL_01496 [Providencia alcalifaciens DSM
           30120]
          Length = 183

 Score = 79.4 bits (194), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 38/141 (26%), Positives = 59/141 (41%), Gaps = 12/141 (8%)

Query: 20  FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79
            F  LR       T+ YPF+    +  FRG+          ++CIAC  C + CPA A+T
Sbjct: 4   LFKTLRN--AGTATVKYPFKPLEVAHGFRGKPE-----YDPQQCIACGACISACPANALT 56

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139
           +E+     +      R+ + + +CIYC  C+E CP  AI     FE A   + +LY    
Sbjct: 57  METDLESGE-----RRWQLFLGRCIYCARCEEVCPTRAIHLTEEFETAVMNKADLYMKGT 111

Query: 140 RLLNNGDRWESEIVRNIVTDS 160
             L +  +           + 
Sbjct: 112 FRLQHCRQCGEAFAPKKSVEY 132


>gi|226327310|ref|ZP_03802828.1| hypothetical protein PROPEN_01177 [Proteus penneri ATCC 35198]
 gi|225204528|gb|EEG86882.1| hypothetical protein PROPEN_01177 [Proteus penneri ATCC 35198]
          Length = 184

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/145 (27%), Positives = 58/145 (40%), Gaps = 13/145 (8%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +  F   ++     + T  YPF+       FRG+          E+CI C  C A CPA
Sbjct: 1   MLKLFKTIIKT---GEATTKYPFKPLDLPDGFRGKPE-----YDAEQCIVCGACTAACPA 52

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A+T+E+     +       + + + +CIYCG C+E CP  AIV    FE A   + +LY
Sbjct: 53  NALTMETNLETGE-----RHWQLFIGRCIYCGRCEEVCPTRAIVLSDMFETAVTKKSDLY 107

Query: 136 YDKERLLNNGDRWESEIVRNIVTDS 160
                 L N              D 
Sbjct: 108 IKGTFKLLNCRECHQPFTPRKSVDY 132


>gi|242238722|ref|YP_002986903.1| hydrogenase 4 subunit H [Dickeya dadantii Ech703]
 gi|242130779|gb|ACS85081.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya
           dadantii Ech703]
          Length = 189

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 13/120 (10%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +  F   L+      +T+ YPF        FRG+           +CI C  C   CPA
Sbjct: 1   MLKLFKTILK---AGNSTVKYPFAPLEVPTGFRGKPE-----YDPAQCIGCAACTMACPA 52

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A+T+++     +       + + + +CI+CG C+E CP  AIV    FE A  ++ +LY
Sbjct: 53  NALTMDNDINNGE-----RIWQLFLGRCIFCGRCEEVCPTRAIVLSQEFEMAVASKADLY 107


>gi|48478477|ref|YP_024183.1| NADH dehydrogenase subunit I [Picrophilus torridus DSM 9790]
 gi|48431125|gb|AAT43990.1| NADH-quinone oxidoreductase chain I [Picrophilus torridus DSM 9790]
          Length = 170

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 44/142 (30%), Positives = 57/142 (40%), Gaps = 23/142 (16%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-- 74
           +   +   ++ FK   TI YP EKG    RFR    L       E CI C LC+ ICP  
Sbjct: 26  IQTMYHVGKFIFKKPVTIQYPEEKGDIPERFRYRIFL-----SPESCIGCTLCQQICPNH 80

Query: 75  ---------------AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
                          A AI    G R +   +R +  D++   C  C  C+E CP +AI 
Sbjct: 81  SIKMEVWDLSSQNTGAHAIKTARGVRENAQNKRHLYPDVNFGTCTVCRNCEEICPTNAIY 140

Query: 120 EGPNFEFATETRQELYYDKERL 141
               FE A  TR    Y  + L
Sbjct: 141 LTHEFETA-RTRNSFTYSPQEL 161


>gi|301156408|emb|CBW15879.1| formate hydrogenlyase complex iron-sulfur protein [Haemophilus
           parainfluenzae T3T1]
          Length = 215

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 11/117 (9%)

Query: 20  FFLCLRYFFK-AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78
            F  L+  FK    T  YPF+       FRG+  L         CI C  C   CPA A+
Sbjct: 1   MFKLLKTVFKAGDVTTKYPFKPYEVDEDFRGKPELNSDQ-----CIVCAACTIACPANAL 55

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
           T+ + P   +       + + + +CI+CG C+E CP  AI    +FE +   +Q+L+
Sbjct: 56  TMRTDPITGE-----RTWSLFLGRCIFCGRCEEVCPTKAIRLSQDFELSVTNKQDLF 107


>gi|295401604|ref|ZP_06811572.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312110880|ref|YP_003989196.1| formate hydrogenlyase complex iron-sulfur subunit [Geobacillus sp.
           Y4.1MC1]
 gi|294976371|gb|EFG51981.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311215981|gb|ADP74585.1| formate hydrogenlyase complex iron-sulfur subunit [Geobacillus sp.
           Y4.1MC1]
          Length = 172

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 40/142 (28%), Positives = 59/142 (41%), Gaps = 10/142 (7%)

Query: 19  AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78
              L  +     + T+ YPF+    +P FRG+           +CIAC  C   CP+ AI
Sbjct: 1   MLKLLKKALQVGEATVKYPFKPLEVAPGFRGKPV-----YDFSQCIACGACATACPSNAI 55

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
           T+E   +     R  V ++I+  +CI+CG C E CP  AI     FE A   +++LY   
Sbjct: 56  TMEHDFK-----RGIVSWNINYGRCIFCGRCDEVCPTGAIALSEEFELAASRKEDLYCRA 110

Query: 139 ERLLNNGDRWESEIVRNIVTDS 160
           E  L                + 
Sbjct: 111 EIQLCKCSSCGKHFAPYRELEY 132


>gi|72151767|ref|XP_780257.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S
          protein 8, 23kDa (NADH-coenzyme Q reductase), partial
          [Strongylocentrotus purpuratus]
 gi|115659328|ref|XP_001197681.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S
          protein 8, 23kDa (NADH-coenzyme Q reductase), partial
          [Strongylocentrotus purpuratus]
          Length = 87

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 48/74 (64%), Positives = 52/74 (70%)

Query: 3  IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
          I     S LF  E      + L Y F+   TINYPFEKG  SPRFRGEHALRRYP+GEER
Sbjct: 14 ITDRAASTLFFTELTRGLAMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSGEER 73

Query: 63 CIACKLCEAICPAQ 76
          CIACKLCEA+CPAQ
Sbjct: 74 CIACKLCEAVCPAQ 87


>gi|222100328|ref|YP_002534896.1| Glutamate synthase, beta subunit [Thermotoga neapolitana DSM 4359]
 gi|221572718|gb|ACM23530.1| Glutamate synthase, beta subunit [Thermotoga neapolitana DSM 4359]
          Length = 618

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 8/125 (6%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFE-KGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           K+F        ++  +   TI  P + K   S R+RG H      N   +CI C  C  I
Sbjct: 12  KDFFAPLK-AWKFLARKPVTIEVPNKTKREASERYRGFHV-----NDWGKCIGCGTCSKI 65

Query: 73  CPAQAITIESGPRCHDGTRR-TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           CP  AIT+   P       +   R  ID  +C +C LC + C   ++     +   +E  
Sbjct: 66  CPTDAITMVEVPDLTQEDGKLPQRPVIDYGRCSFCALCVDICTTGSLQMTREYIHISEDP 125

Query: 132 QELYY 136
           ++  +
Sbjct: 126 EDFVF 130


>gi|145592470|ref|YP_001154472.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum arsenaticum DSM 13514]
 gi|145284238|gb|ABP51820.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           arsenaticum DSM 13514]
          Length = 132

 Score = 78.6 bits (192), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 13/127 (10%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           +  F + ++  F+   T+ +P E+     R RG        N   +CI+C+LCEA+CPA+
Sbjct: 5   LKLFVVAVKNLFERPWTVRWPEERRDYGDRVRGFIV-----NDRSKCISCQLCEAVCPAK 59

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
           AI                   ID  +CI CG C +ACP  ++    + E     R    Y
Sbjct: 60  AIKFHLEENGKRYPG------IDWGRCILCGYCVDACPTGSLQHTTDVEI--TWRDLNTY 111

Query: 137 DKERLLN 143
            K R + 
Sbjct: 112 RKPREME 118


>gi|322831877|ref|YP_004211904.1| formate hydrogenlyase complex iron-sulfur subunit [Rahnella sp.
           Y9602]
 gi|321167078|gb|ADW72777.1| formate hydrogenlyase complex iron-sulfur subunit [Rahnella sp.
           Y9602]
          Length = 185

 Score = 78.2 bits (191), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 32/141 (22%), Positives = 57/141 (40%), Gaps = 10/141 (7%)

Query: 19  AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78
              L  +       T+ YPF+    +  FRG+          ++CIAC  C   CP+ A+
Sbjct: 1   MLKLIKKVLKTGTATVAYPFKPLDLAANFRGKP-----QYTAQQCIACGACANACPSNAL 55

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
           T+ +           +R+ + + +CI+C  C+E CP  AI     FE A   +++L+   
Sbjct: 56  TMTTAEDGET-----LRWQLFLGRCIFCARCEEVCPTAAIRLSQEFELAVWRKEDLFETA 110

Query: 139 ERLLNNGDRWESEIVRNIVTD 159
           +  + +              D
Sbjct: 111 DFPICHCRACGKPYAVQKEID 131


>gi|251792878|ref|YP_003007604.1| hydrogenase-4 subunit H [Aggregatibacter aphrophilus NJ8700]
 gi|247534271|gb|ACS97517.1| hydrogenase-4 component H [Aggregatibacter aphrophilus NJ8700]
          Length = 215

 Score = 78.2 bits (191), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 11/117 (9%)

Query: 20  FFLCLRYFFK-AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78
            F  L+  FK    T  YPF+       FRG+  L         CI C  C   CPA A+
Sbjct: 1   MFKLLKTVFKTGDATTKYPFKPYEVDEDFRGKPELNSDQ-----CIVCAACTMTCPANAL 55

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
           T+ + P   +       + + + +CI+CG C+E CP  AI    +FE +   +Q+L+
Sbjct: 56  TMRTDPVTGE-----RTWSLFLGRCIFCGRCEEVCPTKAIRLTQDFELSVANKQDLF 107


>gi|269140239|ref|YP_003296940.1| hydrogenase 4 subunit H [Edwardsiella tarda EIB202]
 gi|267985900|gb|ACY85729.1| hydrogenase 4 subunit H [Edwardsiella tarda EIB202]
 gi|304560069|gb|ADM42733.1| Formate hydrogenlyase complex 3 iron-sulfur protein; Formate
           hydrogenlyase subunit 6; Ni,Fe-hydrogenase III medium
           subunit [Edwardsiella tarda FL6-60]
          Length = 185

 Score = 78.2 bits (191), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 36/145 (24%), Positives = 58/145 (40%), Gaps = 13/145 (8%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +      LR+      T+ YP         FRG+          ++CIAC  C A CPA
Sbjct: 1   MLKLLKTALRH---RHATVAYPARPLDVDANFRGKP-----QYDAQQCIACGACTAACPA 52

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A+T+++             + +++ +CI+C  C+E CP  AIV  P FE A   +++L 
Sbjct: 53  NALTMQTDAASGV-----RTWALNLGRCIFCARCEEVCPTAAIVLSPEFELAVWRKEDLQ 107

Query: 136 YDKERLLNNGDRWESEIVRNIVTDS 160
              E  +       +        D 
Sbjct: 108 QRAEFRVCRCIECGAPYAAQKEIDY 132


>gi|255513523|gb|EET89789.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Candidatus
           Micrarchaeum acidiphilum ARMAN-2]
          Length = 121

 Score = 78.2 bits (191), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 7/126 (5%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            V       +   K  +T+ +P  + + +  +RG H L       + CI+C  C  ICP 
Sbjct: 2   IVKPLINVAKEVLKPPSTLEFPENRENLTDNYRGIHKL-----DMKTCISCAACARICPN 56

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
           Q I +        GT++     I++ +C++C LC+E CP   ++   ++ F    R++  
Sbjct: 57  QTIDMVDTETPDKGTKKMPL--INLERCLFCALCEEVCPTKCLILTKDYSFEAYDRRDYI 114

Query: 136 YDKERL 141
              E L
Sbjct: 115 KRPEDL 120


>gi|197286368|ref|YP_002152240.1| hydrogenase 4 subunit H [Proteus mirabilis HI4320]
 gi|227357422|ref|ZP_03841776.1| formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
           kD subunit (chain I) [Proteus mirabilis ATCC 29906]
 gi|194683855|emb|CAR44986.1| hydrogenase-4 component H [Proteus mirabilis HI4320]
 gi|227162380|gb|EEI47380.1| formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
           kD subunit (chain I) [Proteus mirabilis ATCC 29906]
          Length = 184

 Score = 77.8 bits (190), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 10/105 (9%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T  YPF+       FRG+          E+CI C  C + CPA A+T+E+     +   
Sbjct: 14  ATTKYPFKPLELPDGFRGKPE-----YSPEQCIVCGACTSACPANALTMETNLETGE--- 65

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
               + + + +CIYCG C+E CP  AIV    FE A   + +LY 
Sbjct: 66  --RHWQLFIGRCIYCGRCEEVCPTRAIVLSDMFETAVTQKSDLYI 108


>gi|294496244|ref|YP_003542737.1| F420H2 dehydrogenase subunit I [Methanohalophilus mahii DSM 5219]
 gi|292667243|gb|ADE37092.1| F420H2 dehydrogenase subunit I [Methanohalophilus mahii DSM 5219]
          Length = 137

 Score = 77.8 bits (190), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 7/128 (5%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +      L+   K + T  YP  +     RFRG   L      + +CI C +C   CP 
Sbjct: 2   VLKNITRALKNIRKPRVTRMYPEIRSELPERFRGLQKL-----DKSKCIGCGICANTCPN 56

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE--FATETRQE 133
            AI I       D T+     +ID+  C++CGLC + CP DA+     +     T   ++
Sbjct: 57  CAIKIVRARVSKDSTKTRWFPEIDVGHCLFCGLCIDQCPQDALSSSKIYTDGIITWKHED 116

Query: 134 LYYDKERL 141
           L +  ++L
Sbjct: 117 LLFTPDQL 124


>gi|119871841|ref|YP_929848.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum islandicum DSM 4184]
 gi|119673249|gb|ABL87505.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           islandicum DSM 4184]
          Length = 132

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 11/114 (9%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           +  F + L+Y F+   T+ +P E+     R RG        N   +CI+C+LCEA+CPA+
Sbjct: 5   LKMFGVALKYVFQRPITVRWPEERRDYGDRIRGFII-----NDRTKCISCQLCEAVCPAK 59

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
           AI                   ID  +CI CG C +ACP  ++    N E     
Sbjct: 60  AIRFHLEADGKRYPG------IDWGRCILCGYCVDACPTGSLRHINNTEIVWTD 107


>gi|312885980|ref|ZP_07745608.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Mucilaginibacter paludis DSM 18603]
 gi|311301517|gb|EFQ78558.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Mucilaginibacter paludis DSM 18603]
          Length = 197

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 40/156 (25%), Positives = 55/156 (35%), Gaps = 36/156 (23%)

Query: 17  VGAFFLCLRYFF----------------------KAKTTINYPFEKGSTSPRFRGEHALR 54
               FL LR+FF                      K   TI YP +K       R      
Sbjct: 13  WVGLFLTLRHFFASNKQRVVSSVKSDNYFEEQDGKGTNTIQYPQQKLPVPEVGR-----Y 67

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCH---------DGTRRTVRYDIDMIKCIY 105
           +     + CI C LC  +CP   ITI+S                     ++DIDM KC+Y
Sbjct: 68  QLDVEMDDCIVCDLCAKVCPVDCITIDSIKATEAIGQTSDGTTKRLYAAKFDIDMAKCMY 127

Query: 106 CGLCQEACPVDAIVEGPNFEFATETRQELYYDKERL 141
           CGLC   CP + I     ++ + +    L Y    +
Sbjct: 128 CGLCTVVCPTECITMTNQYDKSVQDLNLLTYKFSDM 163


>gi|271501146|ref|YP_003334171.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Dickeya dadantii Ech586]
 gi|270344701|gb|ACZ77466.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya
           dadantii Ech586]
          Length = 189

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 13/120 (10%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +  F   L+      +T+ YPF   +    FRG+          E+CI C  C   CPA
Sbjct: 1   MIKLFKTILK---AGNSTVKYPFAPLAVPTGFRGKPE-----YDPEQCIGCAACTMACPA 52

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A+T+ +             + + + +CI+CG C+E CP  AIV    FE A   + +LY
Sbjct: 53  NALTMANDLDSGT-----RTWQLFLGRCIFCGRCEEVCPTRAIVLSQEFEMAVANKADLY 107


>gi|288961304|ref|YP_003451643.1| formate hydrogenlyase complex iron-sulfur subunit [Azospirillum sp.
           B510]
 gi|288913612|dbj|BAI75099.1| formate hydrogenlyase complex iron-sulfur subunit [Azospirillum sp.
           B510]
          Length = 186

 Score = 77.4 bits (189), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 38/145 (26%), Positives = 59/145 (40%), Gaps = 11/145 (7%)

Query: 20  FFLCLRYFFK-AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78
               L+  F+  + T+ YPF        FRG+   +      E CIAC  C   CPA AI
Sbjct: 1   MLKLLKEIFRTGEATVKYPFAPMPVCKDFRGKPEHK-----AEDCIACAACTVACPANAI 55

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
            +E+     +       + I+  +C++CG C+E+CP  AI    +FE A  ++ +L    
Sbjct: 56  AMETDTTAGN-----RVWSINYGRCVFCGRCEESCPTGAIRLSDDFELAVGSKADLTRKA 110

Query: 139 ERLLNNGDRWESEIVRNIVTDSPYR 163
              L +              D   R
Sbjct: 111 VFTLADCACCGKPFAPAKEVDYVAR 135


>gi|307130312|ref|YP_003882328.1| hydrogenase 4, Fe-S subunit [Dickeya dadantii 3937]
 gi|306527841|gb|ADM97771.1| hydrogenase 4, Fe-S subunit [Dickeya dadantii 3937]
          Length = 189

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 13/120 (10%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +  F   L+      +T+ YPF   +    FRG+           +CI C  C   CPA
Sbjct: 1   MIKLFKTILK---AGNSTVKYPFAPLAVPAGFRGKPE-----YDPAQCIGCAACTMACPA 52

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A+T+ +             + + + +CI+CG C+E CP  AIV    FE A  ++ +LY
Sbjct: 53  NALTMANDLDNGT-----RTWQLFLGRCIFCGRCEEVCPTRAIVLSQEFEMAVASKADLY 107


>gi|149909813|ref|ZP_01898464.1| putative oxidoreductase [Moritella sp. PE36]
 gi|149807145|gb|EDM67101.1| putative oxidoreductase [Moritella sp. PE36]
          Length = 134

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 5/111 (4%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           ++    G+  C+ C+LC  ICP   IT+        G RR   +DID+ +C+YCGLC++A
Sbjct: 1   MKTNDEGDVNCVGCELCAKICPCDCITVVPYED-EKGNRRPKVFDIDLARCLYCGLCEDA 59

Query: 113 CPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWES----EIVRNIVTD 159
           CP DAI  G  +E AT T + L    E L+    + E      I  ++  D
Sbjct: 60  CPADAIKLGQEYEVATTTTEALVVHLEDLIAAPRKAEEGAGTVIPASLAKD 110


>gi|218883727|ref|YP_002428109.1| NADH-ubiquinone oxidoreductase, subunit I [Desulfurococcus
           kamchatkensis 1221n]
 gi|218765343|gb|ACL10742.1| NADH-ubiquinone oxidoreductase, subunit I [Desulfurococcus
           kamchatkensis 1221n]
          Length = 133

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 34/116 (29%), Positives = 43/116 (37%), Gaps = 8/116 (6%)

Query: 18  GAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA 77
               L L+       TI YP E     P +RG H          +C  C LC   CPA A
Sbjct: 5   KILNLVLKNLASKPATIQYPKEPTPVEPDYRGRH-----YADLGKCTGCSLCSIECPADA 59

Query: 78  ITIESGP---RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
           I +   P          R +   ID  KC+YC  C   CP +A +    +  A  T
Sbjct: 60  IKMTPIPSGYDVPKSNPRKIYPLIDYGKCVYCYRCITVCPFNAYISTNEYRLADTT 115


>gi|110598462|ref|ZP_01386733.1| 4Fe-4S ferredoxin, iron-sulfur binding [Chlorobium ferrooxidans DSM
           13031]
 gi|110339912|gb|EAT58416.1| 4Fe-4S ferredoxin, iron-sulfur binding [Chlorobium ferrooxidans DSM
           13031]
          Length = 207

 Score = 77.4 bits (189), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 45/170 (26%), Positives = 58/170 (34%), Gaps = 39/170 (22%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKT--------------------TINYPFEK 40
           M  +  N+    +        + L++FF A                      T+ YP E 
Sbjct: 1   MSEYFSNIKTGAVT-IATGLGITLKHFFNATKRKGDAGVDDVDYFRQVDGLCTLQYPREV 59

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH------------- 87
             T    R      R  N  E CI C  CE  CP   ITIE+                  
Sbjct: 60  IPTPLNGR-----YRLYNNIEDCIGCGQCERACPISCITIETIKVAADDLAVCGKTSDGQ 114

Query: 88  DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
                   +DID  KC+ CGLC   CP D +V  P  +F+   RQ L Y 
Sbjct: 115 QKKFWVPVFDIDTAKCMTCGLCTNVCPTDCLVHTPVSDFSQFDRQNLLYH 164


>gi|194333680|ref|YP_002015540.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Prosthecochloris aestuarii DSM 271]
 gi|194311498|gb|ACF45893.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Prosthecochloris aestuarii DSM 271]
          Length = 206

 Score = 77.1 bits (188), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 50/155 (32%), Gaps = 38/155 (24%)

Query: 16  FVGAFFLCLRYFFK--------------------AKTTINYPFEKGSTSPRFRGEHALRR 55
            +    + LR+FF                        T+ YP E   T    R      R
Sbjct: 15  ILTGMGITLRHFFNAVKRKGDAGIDDAGYFGQVDGLVTLQYPKEAVPTPEIAR-----YR 69

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGP-------------RCHDGTRRTVRYDIDMIK 102
             N  + CI C  C   CP + I +E+                          +DID+ K
Sbjct: 70  LYNNIDDCIGCGQCVRACPIECIAMETIKVTKDDLDLCGKTSNGQQKRFWVPVFDIDVAK 129

Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
           C+ CG+C   CP + +      +F+   R  + Y 
Sbjct: 130 CMTCGICASVCPTECLYHTTVSDFSEFNRDYMIYH 164


>gi|145219895|ref|YP_001130604.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Prosthecochloris vibrioformis DSM 265]
 gi|145206059|gb|ABP37102.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Chlorobium
           phaeovibrioides DSM 265]
          Length = 210

 Score = 77.1 bits (188), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 42/181 (23%), Positives = 57/181 (31%), Gaps = 50/181 (27%)

Query: 16  FVGAFFLCLRYF---FKAK-----------------TTINYPFEKGSTSPRFRGEHALRR 55
                 + L++F   F  K                  T+ YP E   T    RG + L  
Sbjct: 15  IATGMGITLKHFLNAFNRKGDAGIDDVDYFRQVDGLVTLQYPREAVPTPL--RGRYRLHN 72

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCH-------------DGTRRTVRYDIDMIK 102
             +    CI C  C   CP   I IE+                          +DID  K
Sbjct: 73  AIDD---CIGCGQCVRACPVNCIEIETIKVMPEDLAACGKTSGGQQKKFWVPVFDIDTAK 129

Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPY 162
           C+ CG+C   CP + +V  P  +F+   RQ L Y    L              I  D+  
Sbjct: 130 CMTCGMCTNVCPTECLVHTPVSDFSEFDRQNLLYHFGNL------------SRIEADAKR 177

Query: 163 R 163
           R
Sbjct: 178 R 178


>gi|260913689|ref|ZP_05920165.1| hydrogenase-4 component H [Pasteurella dagmatis ATCC 43325]
 gi|260632228|gb|EEX50403.1| hydrogenase-4 component H [Pasteurella dagmatis ATCC 43325]
          Length = 189

 Score = 77.1 bits (188), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 50/117 (42%), Gaps = 11/117 (9%)

Query: 20  FFLCLRYFFK-AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78
            F  L+  FK    T+ YPF+     P  RG             CI C  C   CPA A+
Sbjct: 1   MFKLLKTVFKTGDATVKYPFKPLDVHPDVRGRPEFNSDQ-----CIVCSACTMACPANAL 55

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
           T+ +     D       + + + +CI+CG C+E CP  AI    +FE A   + +L 
Sbjct: 56  TMRTDAVTGD-----RTWSLFLARCIFCGRCEEVCPTKAIRLTNDFELAVANKDDLL 107


>gi|171186239|ref|YP_001795158.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoproteus neutrophilus V24Sta]
 gi|170935451|gb|ACB40712.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermoproteus
           neutrophilus V24Sta]
          Length = 132

 Score = 77.1 bits (188), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 11/114 (9%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           +  F + L+Y F+   T+ +P E+     R RG        N   +CI+C+LCEA+CPA+
Sbjct: 5   LKMFGVALKYVFQRPITVRWPEERRDYGDRMRGFIV-----NDRGKCISCQLCEAVCPAK 59

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
           AI                   ID  +CI CG C +ACP  ++    N E     
Sbjct: 60  AIKFHLEADGRRYPG------IDWGRCILCGYCVDACPTGSLKYVNNTEIVWTD 107


>gi|289811711|ref|ZP_06542340.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 112

 Score = 77.1 bits (188), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 40/112 (35%), Positives = 56/112 (50%), Gaps = 8/112 (7%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LKE +  F   +R       + F  + T  YP E     PR+RG   L R P+GEERC
Sbjct: 1   MTLKELLVGFGTQVRSIWMIGLHAFAKRETRMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           +AC LC   CP   I+++      DG      + I+  +CI+CGLC+E  P 
Sbjct: 61  VACNLCAVACPVGCISLQKAE-TKDGRWYPEFFRINFSRCIFCGLCEERRPT 111


>gi|239905461|ref|YP_002952200.1| iron-sulfur binding protein [Desulfovibrio magneticus RS-1]
 gi|239795325|dbj|BAH74314.1| iron-sulfur binding protein [Desulfovibrio magneticus RS-1]
          Length = 199

 Score = 77.1 bits (188), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 35/154 (22%), Positives = 53/154 (34%), Gaps = 29/154 (18%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL--RRYPNGEERCIACKLCE 70
           LK       +  R F K   T+ YP ++ +    +RG   L  R       RCIAC  C 
Sbjct: 14  LKSLFVGLGITGRAFAKPAVTVIYPKQEVTNLDTYRGHIELVGREDNPAMPRCIACGACT 73

Query: 71  AICPAQAITIES---------------------------GPRCHDGTRRTVRYDIDMIKC 103
             CP+Q +++                              P    G +    +  D   C
Sbjct: 74  RACPSQCLSVGCPVGAGSGGGDAEALELAGELIPVGTAMAPAPQKGCKVPGVFIYDYSLC 133

Query: 104 IYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
             CG C  ACPVD++    +  +   +R +   D
Sbjct: 134 SLCGQCVRACPVDSLRFSQHVYYVGRSRADFRLD 167


>gi|298674250|ref|YP_003726000.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Methanohalobium evestigatum Z-7303]
 gi|298287238|gb|ADI73204.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanohalobium evestigatum Z-7303]
          Length = 143

 Score = 76.7 bits (187), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 8/122 (6%)

Query: 23  CLRYFFKAKTTINYPFEK-GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
            ++  ++   TI  P EK      RF+G   L      + +CI C +C   CP  AI I 
Sbjct: 9   AIKSIYQPPVTIMCPEEKSRGIPERFKGLQVL-----DKSKCIGCGICANTCPNNAIKIV 63

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE--FATETRQELYYDKE 139
                    ++    +ID+  C++CGLC + CP DA+     +         ++L +  +
Sbjct: 64  RSRVSKTSDKQRWFPEIDIGHCMFCGLCIDQCPQDALSSSKIYTSGVVKWNHEDLLFTPD 123

Query: 140 RL 141
            L
Sbjct: 124 EL 125


>gi|327310888|ref|YP_004337785.1| NADH-quinone oxidoreductase subunit I [Thermoproteus uzoniensis
           768-20]
 gi|326947367|gb|AEA12473.1| NADH-quinone oxidoreductase, subunit I [Thermoproteus uzoniensis
           768-20]
          Length = 132

 Score = 76.7 bits (187), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 11/123 (8%)

Query: 12  FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71
            L + +  F + ++   +   T++YP E      R RG        N  ++CI+C LCEA
Sbjct: 1   MLTDHIRLFAVAVKNALRGPITVDYPRESRDYGDRLRGYIV-----NDRDKCISCGLCEA 55

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           +CPA+A+    GP             ID  +CI+CG C +ACP  ++      E    + 
Sbjct: 56  VCPAKAVKFSVGPDGKRYPG------IDYGRCIFCGYCVDACPTGSLRHTQWHEVVWTSL 109

Query: 132 QEL 134
              
Sbjct: 110 DTF 112


>gi|251790299|ref|YP_003005020.1| hydrogenase 4 subunit H [Dickeya zeae Ech1591]
 gi|247538920|gb|ACT07541.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya zeae
           Ech1591]
          Length = 189

 Score = 76.7 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 13/120 (10%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +  F   L+      +T+ YPF   +    FRG+          E+CI C  C   CPA
Sbjct: 1   MIKLFKTILK---AGNSTVKYPFAPLAVPAGFRGKPE-----YAPEQCIGCAACTMACPA 52

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A+T+ +             + + + +CI+CG C+E CP  AIV    FE A   + +LY
Sbjct: 53  NALTMANDLDNGT-----RTWQLFLGRCIFCGRCEEVCPTRAIVLSQEFEMAVANKADLY 107


>gi|20808125|ref|NP_623296.1| formate hydrogenlyase complex iron-sulfur subunit
           [Thermoanaerobacter tengcongensis MB4]
 gi|254479089|ref|ZP_05092442.1| 4Fe-4S binding domain protein [Carboxydibrachium pacificum DSM
           12653]
 gi|20516712|gb|AAM24900.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
           kD subunit (chain I) [Thermoanaerobacter tengcongensis
           MB4]
 gi|214034971|gb|EEB75692.1| 4Fe-4S binding domain protein [Carboxydibrachium pacificum DSM
           12653]
          Length = 198

 Score = 76.7 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 10/104 (9%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T+ YPF+    +  FRG+ A         RCI C  C   CP+ AIT++         R
Sbjct: 14  ATVEYPFKPVEVAQGFRGKPA-----YDFSRCIGCGACATACPSNAITMDCDLD-----R 63

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               ++I+  +CI+CG C+E CP  AIV    FE A   ++++Y
Sbjct: 64  GIKSWNINYGRCIFCGRCEEVCPTGAIVLSTEFELAVIKKEDMY 107



 Score = 33.5 bits (75), Expect = 9.5,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAI--TIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           ++ +     RCI C  CE +CP  AI  + E             R +  + +CI+CG
Sbjct: 65  IKSWNINYGRCIFCGRCEEVCPTGAIVLSTEFELAVIKKEDMYCRAEFQLCRCIFCG 121


>gi|75764476|ref|ZP_00743963.1| NADH-quinone oxidoreductase chain I [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74488039|gb|EAO51768.1| NADH-quinone oxidoreductase chain I [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 111

 Score = 76.7 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 36/112 (32%), Positives = 47/112 (41%), Gaps = 7/112 (6%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD--GTRRTVRYDID 99
               RFRG           E+CI C  C  ICP   I +            +    YDI+
Sbjct: 2   PLPDRFRGIQKFY-----PEKCIVCNQCSNICPTDCIQLTGKKHPDPTKKGKIIDTYDIN 56

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
              CI C LC E CP +AIV   NFE A  +R +L+ + + L  N +    E
Sbjct: 57  FEICILCDLCTEVCPTEAIVMTNNFELAEYSRDDLFKNLQWLDENDENVRKE 108


>gi|218884264|ref|YP_002428646.1| NuoI NADH dehydrogenase I, subunit I [Desulfurococcus kamchatkensis
           1221n]
 gi|218765880|gb|ACL11279.1| NuoI NADH dehydrogenase I, subunit I [Desulfurococcus kamchatkensis
           1221n]
          Length = 158

 Score = 76.7 bits (187), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 8/115 (6%)

Query: 24  LRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
           L+Y  +   T   P  +K   +P  RG H L        +C  C +C+ +CPA AI + +
Sbjct: 10  LKYLLRKPYTRQVPRIDKPFKTPVTRGSHVL-----DMLKCTGCSMCQQVCPANAIDMVT 64

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG--PNFEFATETRQELY 135
               +    R     ID+ KC +CGLC E CP +A+       +E  T  +  L 
Sbjct: 65  ADGDYPQNPRKRFPRIDLHKCTFCGLCVEYCPFNALSMTTATGYELFTVDKSTLL 119


>gi|50120179|ref|YP_049346.1| hydrogenase 4 subunit H [Pectobacterium atrosepticum SCRI1043]
 gi|49610705|emb|CAG74150.1| hydrogenase-4 component H [Pectobacterium atrosepticum SCRI1043]
          Length = 183

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 10/104 (9%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T+ YPF      P FRG+          ++CIAC  C   CPA A+T+E+         
Sbjct: 15  VTVKYPFAPLEVCPGFRGKPE-----YDAQQCIACGACTIACPANALTMETDIETGA--- 66

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               + + + +CI+CG C+E CP  AI    +FE A   + +LY
Sbjct: 67  --RTWQLFLGRCIFCGRCEEVCPTRAIQLSADFELAVTHKPDLY 108


>gi|260893115|ref|YP_003239212.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ammonifex
           degensii KC4]
 gi|260865256|gb|ACX52362.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ammonifex
           degensii KC4]
          Length = 147

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 42/128 (32%), Positives = 51/128 (39%), Gaps = 14/128 (10%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           +    + LR  F    T  YP E  S  P  RGE          E C+ C+ CE  CP  
Sbjct: 1   MKMLSVVLRNLFSPPVTRKYPQEIRSPFPATRGEIVFT-----VEECMTCRRCERTCPVG 55

Query: 77  AITIESGPRCH---------DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           AI +E GPR            G  R ++   D  KCIYCGLC E CP   IV        
Sbjct: 56  AIKVEIGPRLEVASAGEGQTRGAGRLIKRRYDPYKCIYCGLCIEVCPQGIIVFQGTHTSP 115

Query: 128 TETRQELY 135
              ++E  
Sbjct: 116 ATRKEEKV 123


>gi|325104669|ref|YP_004274323.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pedobacter
           saltans DSM 12145]
 gi|324973517|gb|ADY52501.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pedobacter
           saltans DSM 12145]
          Length = 194

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 41/178 (23%), Positives = 61/178 (34%), Gaps = 39/178 (21%)

Query: 13  LKEFVGAFFLCLRYF---FKAK-----------------TTINYPFEKGSTSPRFRGEHA 52
           LK       +  ++    FK+K                  T+ YP +K       R    
Sbjct: 10  LKTSWKGLTITFKHLIGAFKSKKIKGIEDPNYFEEQAGIVTLQYPHQKLPIPEVGR---- 65

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR---------RTVRYDIDMIKC 103
             +     + CI C LC  ICP   I IES        +            ++DIDM KC
Sbjct: 66  -YQLHVEIDDCIVCDLCAKICPVDCIEIESIKATEAIGKTSDGSVKRLYAAKFDIDMAKC 124

Query: 104 IYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161
           +YCGLC   CP + I     ++ +  +  EL Y    +       E   ++    D  
Sbjct: 125 MYCGLCTTVCPTECITMTNQYDRSFPSITELNYKFSTMTE-----EEAELKRQELDKQ 177


>gi|94269628|ref|ZP_01291517.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
 gi|93451146|gb|EAT02073.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
          Length = 131

 Score = 76.3 bits (186), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 2/108 (1%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGE--ERCIACKLCEAICPAQAITIESGPRCHDG 89
            T+ YP +    +PR+RG   L      E   +CIAC +C+  CP+  IT++S       
Sbjct: 14  VTLQYPRQTFKMAPRYRGHIDLIFDAEAESGNKCIACGMCQRNCPSDCITLKSEKPEGAK 73

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
            +    Y +D  KC  CGLC E+CP DA+     +  A    ++  +D
Sbjct: 74  KKVLTGYQLDFTKCSLCGLCVESCPTDALEFSKEYNLAGLKAEDYVFD 121


>gi|261368107|ref|ZP_05980990.1| putative Ech hydrogenase, subunit EchF [Subdoligranulum variabile
           DSM 15176]
 gi|282569865|gb|EFB75400.1| putative Ech hydrogenase, subunit EchF [Subdoligranulum variabile
           DSM 15176]
          Length = 146

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 43/118 (36%), Gaps = 14/118 (11%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80
              L+  F    T +YPF       R RG   +       E CI+C +C   CP  A+T+
Sbjct: 11  GTALKNLFSKPVTTSYPFAPAQYPERMRGHIEI-----DIESCISCGMCARSCPPGALTV 65

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
           +         R    + I    C+ CG C   CP   +   P +     TR    Y +
Sbjct: 66  D---------RAAGTWTIQRFDCVQCGNCVNVCPKKCLKMVPGYTTPDTTRHSDTYTR 114


>gi|156934234|ref|YP_001438150.1| formate hydrogenlyase complex iron-sulfur subunit [Cronobacter
           sakazakii ATCC BAA-894]
 gi|156532488|gb|ABU77314.1| hypothetical protein ESA_02064 [Cronobacter sakazakii ATCC BAA-894]
          Length = 180

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 53/136 (38%), Gaps = 10/136 (7%)

Query: 25  RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84
           +       T  YP +       FRG+       +  ++CI C  C   CP+ A+T+E+  
Sbjct: 7   KALKTGVATQPYPLQPMPVDKNFRGKP-----QHNPQQCIGCAACINACPSNALTVETDL 61

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNN 144
           +        + +  ++ +CI+CG C+E CP  AI   P +E A   +++        L  
Sbjct: 62  QHDR-----LDWQFNLGRCIFCGRCEEVCPTAAIRLTPEYELAVWRKEDFLQQASFALCR 116

Query: 145 GDRWESEIVRNIVTDS 160
               +         D 
Sbjct: 117 CRVCQQPFAVQKEVDY 132


>gi|325969470|ref|YP_004245662.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Vulcanisaeta
           moutnovskia 768-28]
 gi|323708673|gb|ADY02160.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Vulcanisaeta
           moutnovskia 768-28]
          Length = 194

 Score = 75.9 bits (185), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 38/146 (26%), Positives = 53/146 (36%), Gaps = 16/146 (10%)

Query: 17  VGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
             A     +   +  + TI YP E      RFRG   L       ++CI+C  C   CP 
Sbjct: 20  AKALITGFKEAIEPNRLTIQYPREVRWVPERFRGWIML-----DIKKCISCFQCAWACPV 74

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            AI +   P             I   +CI C  C +ACPV A++  P  + A     E+ 
Sbjct: 75  NAIQMYRAPNGKFYPG------IRYTECILCHFCVDACPVGALIPTPIHDIAYVDFDEVK 128

Query: 136 YDKERLLN----NGDRWESEIVRNIV 157
           +  E +        D  E  I   I 
Sbjct: 129 FKPEDMSRSPEYIYDESERVIKYEIK 154


>gi|270263098|ref|ZP_06191368.1| formate hydrogenlyase complex iron-sulfur subunit [Serratia
           odorifera 4Rx13]
 gi|270042786|gb|EFA15880.1| formate hydrogenlyase complex iron-sulfur subunit [Serratia
           odorifera 4Rx13]
          Length = 177

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 32/142 (22%), Positives = 56/142 (39%), Gaps = 10/142 (7%)

Query: 19  AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78
              L  +       T+ YP +  +    FRG+          ++CIAC  C   CP+ A+
Sbjct: 1   MLKLIKKVLKTGNATVAYPAQPLAVDANFRGKPE-----YSPQQCIACGACANACPSNAL 55

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
           T+E+           +R+   + +CI+C  C+E CP  A+     FE A   +++L    
Sbjct: 56  TMETDVENGV-----IRWQFFLGRCIFCARCEEVCPTTALRLSNQFELAVWRKEDLLESA 110

Query: 139 ERLLNNGDRWESEIVRNIVTDS 160
           +  L +  +           D 
Sbjct: 111 DFALCHCRQCGKAYAPQKEIDY 132


>gi|91202885|emb|CAJ72524.1| strongly similar to membrane-bound [NiFe]-hydrogenase-3, small
           subunit (chain G) [Candidatus Kuenenia stuttgartiensis]
          Length = 262

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 12/111 (10%)

Query: 25  RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84
           + F     T  YP++K      FRG   +       E+C AC +C   CP  A T     
Sbjct: 7   KSFQTGIATSGYPWKKEPAPLHFRGRIEI-----DSEKCKACNVCVETCPTNAYTWIEE- 60

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
               G R      +   KC++CG+C+E CP  AI    +FE A   +++L 
Sbjct: 61  ---QGKRYL---QLSHAKCVFCGMCEEVCPYKAIRITNDFELAATNKEDLL 105


>gi|327400432|ref|YP_004341271.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
 gi|327315940|gb|AEA46556.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
          Length = 176

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 37/128 (28%), Positives = 54/128 (42%), Gaps = 12/128 (9%)

Query: 17  VGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
           + AF + LR   K  + T+ YP E       FRG            +CI+C  C  +CPA
Sbjct: 22  LEAFGIGLREAIKPSRLTVQYPREIRKRPDNFRGMLIFEID-----KCISCFQCAFVCPA 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            AI ++ GP             ++  KCI+C  C + CP  A       + A  T +E+ 
Sbjct: 77  NAIAMKKGPDGKYYP------SVNYAKCIFCHFCADTCPKGAWKSSKFMDVAFPTIEEML 130

Query: 136 YDKERLLN 143
              E+LL 
Sbjct: 131 LTTEKLLR 138


>gi|260597691|ref|YP_003210262.1| formate hydrogenlyase complex iron-sulfur subunit [Cronobacter
           turicensis z3032]
 gi|260216868|emb|CBA30405.1| Formate hydrogenlyase subunit 6 [Cronobacter turicensis z3032]
          Length = 180

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/136 (22%), Positives = 52/136 (38%), Gaps = 10/136 (7%)

Query: 25  RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84
           +       T  YP +       FRG+       +  ++CI C  C   CP+ A+T+E+  
Sbjct: 7   KALKTGVATQPYPLQPMPVDKNFRGKP-----QHNPQQCIGCAACINACPSNALTVETDL 61

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNN 144
                    + +  ++ +CI+CG C+E CP  AI   P +E A   +++        L  
Sbjct: 62  EHDR-----LDWQFNLGRCIFCGRCEEVCPTAAIRLTPEYELAVWRKEDFLQQASFALCR 116

Query: 145 GDRWESEIVRNIVTDS 160
               +         D 
Sbjct: 117 CRVCQQPFAVQKEVDY 132


>gi|117925495|ref|YP_866112.1| oxidoreductase [Magnetococcus sp. MC-1]
 gi|117609251|gb|ABK44706.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Magnetococcus sp. MC-1]
          Length = 598

 Score = 75.5 bits (184), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 7/119 (5%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80
           F   +  F+   +I  P  +   +PR+RG H      N  E+CI C  CEAIC   AI +
Sbjct: 10  FTAWKNLFREPVSIKDPIHR-KAAPRYRGFH-----KNDVEKCIGCGTCEAICQNGAIDM 63

Query: 81  -ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
            E+     + +   +R  ID  +C +C LC + C   ++     +++     +   +  
Sbjct: 64  VENRDVPGNRSDSGLRPRIDYGRCCWCALCVDVCMTSSLTMSNAYQWVDSDPKAFMFTP 122


>gi|307595216|ref|YP_003901533.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Vulcanisaeta distributa DSM 14429]
 gi|307550417|gb|ADN50482.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Vulcanisaeta
           distributa DSM 14429]
          Length = 194

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 49/126 (38%), Gaps = 12/126 (9%)

Query: 17  VGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
             A     +   +  + TI YP E      RFRG   L       ++CI+C  C   CP 
Sbjct: 20  AKALITGFKEAVEPNRLTIQYPREVRWIPERFRGWIML-----DIKKCISCFQCAWACPV 74

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            AI +   P             I   +CI C  C +ACPV A++  P  + A     E+ 
Sbjct: 75  NAIQMYRAPNGKFYPG------IRYTECILCHFCVDACPVGALIPTPIHDIAYVDFDEVK 128

Query: 136 YDKERL 141
           +  E +
Sbjct: 129 FKPEDM 134


>gi|189500534|ref|YP_001960004.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Chlorobium phaeobacteroides BS1]
 gi|189495975|gb|ACE04523.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chlorobium
           phaeobacteroides BS1]
          Length = 206

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/157 (19%), Positives = 49/157 (31%), Gaps = 38/157 (24%)

Query: 14  KEFVGAFFLCLRYFFK--------------------AKTTINYPFEKGSTSPRFRGEHAL 53
              +    + LR+FF                        T+ YP E   T    R     
Sbjct: 13  TSILTGMGITLRHFFNAVKRKGDAGIDEENYFNQVDGLVTLQYPREAVPTPEIGRYRL-- 70

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCH-------------DGTRRTVRYDIDM 100
               N  + CI C  C   CP   I +E+                          +DID+
Sbjct: 71  ---YNEIDDCIGCGQCVRACPIDCIMMETIKVTKDDLAVCGKTSGGQQKKFWVPVFDIDV 127

Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
            +C+ CG+C   CP + +      +F+   R+ + Y 
Sbjct: 128 AQCMTCGICSAVCPTECLYHTQVSDFSEFRRENMIYH 164


>gi|78188617|ref|YP_378955.1| NADH dehydrogenase I, 23 kDa subunit [Chlorobium chlorochromatii
           CaD3]
 gi|78170816|gb|ABB27912.1| NADH dehydrogenase I, 23 kDa subunit [Chlorobium chlorochromatii
           CaD3]
          Length = 200

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 36/170 (21%), Positives = 54/170 (31%), Gaps = 39/170 (22%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFK--------------------AKTTINYPFEK 40
           M  +  N+    +        + L++FF                        T+ YP E 
Sbjct: 1   MSEYFSNIKSSAVT-IASGMAITLKHFFNAVHRKGDAGLDDVDYFKQVDGLVTLQYPHEV 59

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH------------- 87
             T    R         N  E CI C  C   CP   IT+E+                  
Sbjct: 60  IPTPQHGRYRL-----YNNIEDCIGCGQCVRACPITCITMETIKVLPEDLASCGKTSDGQ 114

Query: 88  DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
                   +DID+ KC+ CG+C   CP + +   P  +F+   R  + Y 
Sbjct: 115 QKKFWIPVFDIDVAKCMTCGICTTVCPTECLYHTPVSDFSEFDRNSMMYH 164


>gi|118431451|ref|NP_147932.2| NADH dehydrogenase subunit I [Aeropyrum pernix K1]
 gi|116062775|dbj|BAA80416.2| NuoI homolog [Aeropyrum pernix K1]
          Length = 186

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 10/131 (7%)

Query: 14  KEFVGAFFLCLRYFFKAK-TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
            + + A  + L+YF   +  +I YP E       +RG   L      + +CI+C  C  I
Sbjct: 21  TDNLAALMIGLKYFVNPRRFSIYYPKEYPELRQGYRGFIIL-----NKAKCISCAACARI 75

Query: 73  CPAQAITIE----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
           CP+ A+ +       P+  +         I+  +CI+CG C + CP +A+      +   
Sbjct: 76  CPSAAMKMIRVPVPHPKEPEKKVTKQFPVINYQRCIFCGYCVDICPTEALYHVNYHDIVY 135

Query: 129 ETRQELYYDKE 139
           +   E+++D E
Sbjct: 136 DNLAEMFWDLE 146


>gi|296242365|ref|YP_003649852.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermosphaera aggregans DSM 11486]
 gi|296094949|gb|ADG90900.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermosphaera
           aggregans DSM 11486]
          Length = 133

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 30/119 (25%), Positives = 44/119 (36%), Gaps = 8/119 (6%)

Query: 18  GAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA 77
               L L        T+ YP++     P FRG H          +C  C LC   CPA  
Sbjct: 5   KLLKLTLENLVSKPATVQYPYQPTVIEPDFRGRH-----YADLSKCTGCSLCSIECPADT 59

Query: 78  ITIESGPR---CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
           I +   P+         R +   I+  +CI+C  C   CP +A V    +  A   + +
Sbjct: 60  IKMTPIPQEYEVPKSNPRRLYPLINYGRCIFCYRCITVCPFNAYVTTNEYRLADTAKND 118


>gi|238921133|ref|YP_002934648.1| formate hydrogenlyase complex iron-sulfur subunit [Edwardsiella
           ictaluri 93-146]
 gi|238870702|gb|ACR70413.1| hydrogenase-4 component H [Edwardsiella ictaluri 93-146]
          Length = 185

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 13/119 (10%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +      LR+      T+ YP         FRG+          ++CIAC  C A CPA
Sbjct: 1   MLKLLKTALRH---RHATVAYPARPLDVDANFRGKP-----QYDAQQCIACGACTAACPA 52

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134
            A+T+++             + +++ +CI+C  C+E CP  AIV    FE A   +++L
Sbjct: 53  NALTMQTDAASGV-----RTWALNLGRCIFCARCEEVCPTAAIVLSSEFELAVWRKEDL 106


>gi|320101009|ref|YP_004176601.1| NADH-ubiquinone oxidoreductase subunit I [Desulfurococcus mucosus
           DSM 2162]
 gi|319753361|gb|ADV65119.1| NADH-ubiquinone oxidoreductase, subunit I [Desulfurococcus mucosus
           DSM 2162]
          Length = 133

 Score = 75.1 bits (183), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 40/114 (35%), Gaps = 8/114 (7%)

Query: 18  GAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA 77
               L +        TI YP E       FRG H          +C  C LC   CPA A
Sbjct: 5   KILGLAVSNLASKPATIEYPKEPTPVEEDFRGRH-----YADLSKCTGCSLCSIECPADA 59

Query: 78  ITIESGPR---CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
           I +   P          R +   ID  KC+YC  C   CP +A +    +  A 
Sbjct: 60  IKMTPIPEGYDVPKSNPRRIYPLIDYGKCVYCYRCISVCPFNAYIHTNEYRLAD 113


>gi|326390320|ref|ZP_08211879.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325993597|gb|EGD52030.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 162

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 2/102 (1%)

Query: 24  LRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYP-NGEERCIACKLCEAICPAQAITIES 82
           L+  FK   T+ YP E     P+       R    N   +CI C +C+ ICP  AI ++ 
Sbjct: 15  LKNLFKKPMTVKYPKEILKVFPKDGVSPIYRGLHTNDLNKCIGCGMCQRICPFDAIEMKV 74

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
                 G R   +  +D  +C +CG C + CP +++    ++
Sbjct: 75  IGENEQG-RAIKKPVVDYGRCSFCGFCVDVCPTNSLKMSRHY 115


>gi|146312834|ref|YP_001177908.1| formate hydrogenlyase complex iron-sulfur subunit [Enterobacter sp.
           638]
 gi|145319710|gb|ABP61857.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Enterobacter
           sp. 638]
          Length = 180

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 11/117 (9%)

Query: 20  FFLCLRYFFK-AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78
            F  ++   K    T +YP E       FRG+       +  ++CI C  C   CP+ A+
Sbjct: 1   MFTFIKKLVKTGTVTSSYPLEPIPVDKNFRGKPE-----HNPQQCIGCAACVNACPSNAL 55

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
           T+E+         + + +  ++ +CI+CG C+E CP  AI     +E A   +++  
Sbjct: 56  TVETDLAT-----KELAWQFNLGRCIFCGRCEEVCPTVAIKLSQEYELAVWKKEDFL 107


>gi|254173917|ref|ZP_04880588.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermococcus
           sp. AM4]
 gi|214032166|gb|EEB72997.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermococcus
           sp. AM4]
          Length = 168

 Score = 74.7 bits (182), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 47/115 (40%), Gaps = 10/115 (8%)

Query: 20  FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79
             L  +     K T  YPF        +RG+  +       E+CI C  C   CP QAI 
Sbjct: 4   LKLISKALSIGKVTEKYPFAPIEVPEDYRGKPVI-----DGEKCIGCGACANACPPQAI- 57

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134
                   D  R      + + +CI+C  CQ+ CPV AI     FE AT  + +L
Sbjct: 58  ----QVYDDVERGVRVVHLFLGRCIFCARCQDVCPVGAIKLTKEFELATPDQDDL 108


>gi|171185123|ref|YP_001794042.1| NADH dehydrogenase subunit I [Thermoproteus neutrophilus V24Sta]
 gi|170934335|gb|ACB39596.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermoproteus
           neutrophilus V24Sta]
          Length = 156

 Score = 74.4 bits (181), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/125 (30%), Positives = 52/125 (41%), Gaps = 13/125 (10%)

Query: 17  VGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
           + A  +  R F K  + T+ YP+EK     R RG   L       E+C +C LC  ICP 
Sbjct: 13  LDALAVAARNFAKPERITVFYPYEKLEY-GRMRGWIGLW-----TEKCTSCMLCARICPT 66

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            AI +   P             ID  +CI C  C + CP DA+      E A    +E+ 
Sbjct: 67  NAIKMYMEPNGKRYPG------IDYGRCIMCHFCIDVCPTDALYPTDIKELAWYDYKEMI 120

Query: 136 YDKER 140
           Y  + 
Sbjct: 121 YTPDM 125


>gi|307265393|ref|ZP_07546949.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919507|gb|EFN49725.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 162

 Score = 74.4 bits (181), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 2/102 (1%)

Query: 24  LRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYP-NGEERCIACKLCEAICPAQAITIES 82
           L+  FK   T+ YP E     P+       R    N   +CI C +C+ ICP  AI ++ 
Sbjct: 15  LKNLFKKPMTVKYPKEILKVFPKDGVSPIYRGLHTNDLNKCIGCGMCQRICPFDAIEMKV 74

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
                 G R   +  +D  +C +CG C + CP +++    ++
Sbjct: 75  IGENEQG-RAIKKPVVDYGRCSFCGFCVDVCPTNSLKMSRHY 115


>gi|254173159|ref|ZP_04879832.1| hydrogenase-4 component b [Thermococcus sp. AM4]
 gi|214032568|gb|EEB73397.1| hydrogenase-4 component b [Thermococcus sp. AM4]
          Length = 201

 Score = 74.4 bits (181), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 44/107 (41%), Gaps = 10/107 (9%)

Query: 29  KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88
           KA  T  YPF      P +RG   +       E+CI C  C   CP  A+ +E       
Sbjct: 25  KAPVTTPYPFIDIEKPPEYRGIPHI-----NPEKCIGCGACVNACPPDALILEWDKEHGV 79

Query: 89  GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
                 R   +  +CI C  C E CP  A+     FE AT+ +++L 
Sbjct: 80  -----KRLTFNAARCIRCHRCVEVCPTGAMEPTNIFEIATDNKEDLV 121


>gi|240102301|ref|YP_002958609.1| formate hydrogenlyase I subunit G (Mhy1G) [Thermococcus
           gammatolerans EJ3]
 gi|239909854|gb|ACS32745.1| formate hydrogenlyase I subunit G (Mhy1G) [Thermococcus
           gammatolerans EJ3]
          Length = 201

 Score = 74.4 bits (181), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 32/107 (29%), Positives = 44/107 (41%), Gaps = 10/107 (9%)

Query: 29  KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88
           KA  T  YPF      P +RG   +       E+CI C  C   CP  A+ +E       
Sbjct: 25  KAPVTTPYPFIDIEKPPEYRGIPHI-----NPEKCIGCGACVNACPPDALILEWDKEHGV 79

Query: 89  GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
                 R   +  +CI C  C E CP  A+     FE AT+ +++L 
Sbjct: 80  -----KRLTFNAARCIRCHRCVEVCPTGAMEPTNIFEIATDNKEDLV 121


>gi|323388075|gb|ADX60299.1| hypothetical protein [Furcellaria lumbricalis]
          Length = 49

 Score = 74.4 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 37/48 (77%), Positives = 43/48 (89%)

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDR 147
           M KCI+CG CQEACPVDAIVEGPN+E+ATET +EL Y+KE+LL NGDR
Sbjct: 2   MTKCIFCGACQEACPVDAIVEGPNYEYATETHEELLYNKEKLLENGDR 49


>gi|327312049|ref|YP_004338946.1| NADH-quinone oxidoreductase subunit I [Thermoproteus uzoniensis
           768-20]
 gi|326948528|gb|AEA13634.1| NADH-quinone oxidoreductase, subunit I [Thermoproteus uzoniensis
           768-20]
          Length = 178

 Score = 74.4 bits (181), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 12/122 (9%)

Query: 21  FLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79
            L ++Y  K  + TI YP+E      R RG   L       ERC +C +C  ICP  AI 
Sbjct: 18  GLGVKYTIKPERLTIYYPYEVPDYMGRVRGWIGLW-----TERCTSCMICARICPTNAIK 72

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139
           +                 ID  +CI C  C +ACP  A+      +FA    +++ Y  +
Sbjct: 73  MYMEKNGRRYPG------IDYGRCIMCHYCIDACPTYALYPTDIRDFAFYRHEDMMYTPD 126

Query: 140 RL 141
            +
Sbjct: 127 MM 128


>gi|242278966|ref|YP_002991095.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
 gi|242121860|gb|ACS79556.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
          Length = 201

 Score = 74.0 bits (180), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 55/162 (33%), Gaps = 29/162 (17%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSP--RFRGEHALRRYPNG 59
           +I+    S   L   +    +  + F     T++YP E  ++     FRG   L   P  
Sbjct: 6   KIWDDVTS---LWSLIVGLKVTGKNFVDKNVTLHYPRETVTSGELEGFRGPLELIGKPKD 62

Query: 60  E--ERCIACKLCEAICPAQAITIESGPRC----------------------HDGTRRTVR 95
               +CIAC +C   CP++ IT+                                +   +
Sbjct: 63  PAKPKCIACMMCVTACPSKCITVVKAKAPKPTEAELQAMKEAEERGEKVNKPKAPKEPAK 122

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
           +  D   C  CG C E CP  A+    N       R+EL  D
Sbjct: 123 FLYDFSLCSLCGSCVENCPAKALRYSSNVYLTVTDRKELKMD 164


>gi|315230910|ref|YP_004071346.1| hydrogenase-4 component H [Thermococcus barophilus MP]
 gi|315183938|gb|ADT84123.1| hydrogenase-4 component H [Thermococcus barophilus MP]
          Length = 172

 Score = 74.0 bits (180), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 35/115 (30%), Positives = 49/115 (42%), Gaps = 10/115 (8%)

Query: 20  FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79
           F L  +     K T  YPF        FRG+  +       E+CI C  C   CP QA+ 
Sbjct: 4   FKLIAKAVSIGKVTEKYPFVPIEVPEGFRGKPVI-----DPEKCIGCTSCSNACPPQALQ 58

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134
           +   P      R      + + +CI+C  CQ+ CP  AI     FE AT + ++L
Sbjct: 59  VYDEPE-----RGVRVVHLFIGRCIFCARCQDVCPTGAIKLTKEFELATLSEEDL 108


>gi|194336917|ref|YP_002018711.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309394|gb|ACF44094.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 214

 Score = 74.0 bits (180), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 36/155 (23%), Positives = 50/155 (32%), Gaps = 38/155 (24%)

Query: 16  FVGAFFLCLRYFFK--------------------AKTTINYPFEKGSTSPRFRGEHALRR 55
                 + L++FF                        T+ YP E   T    R       
Sbjct: 15  IAAGMGITLKHFFNAIHRKGDAGLDDVDYFRQVDGLCTLQYPREVIPTPKHGRYRL---- 70

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGT-------------RRTVRYDIDMIK 102
             N  E CI C  C   CP   IT+E+     D                    +DID+ K
Sbjct: 71  -YNKIEDCIGCGQCVRACPISCITMETIKVAPDDMALCGKTSDGQQKKFWIPVFDIDVAK 129

Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
           C+ CG+C   CP + +V  P  +F+   R    Y 
Sbjct: 130 CMTCGICTTVCPTECLVHTPVSDFSEFDRSNFIYH 164


>gi|57642028|ref|YP_184506.1| NADH-plastoquinone oxidoreductase subunit [Thermococcus
           kodakarensis KOD1]
 gi|57160352|dbj|BAD86282.1| membrane bound hydrogenase, 4Fe-4S cluster-binding subunit
           [Thermococcus kodakarensis KOD1]
          Length = 143

 Score = 74.0 bits (180), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 44/113 (38%), Gaps = 15/113 (13%)

Query: 22  LCLRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80
           + LR  FK   T  +P  E       FRG  A         +C+ C++C  +CPA     
Sbjct: 9   VVLRNLFKKPATNRFPQTEPVPIPEDFRGMIAYNVD-----KCVGCRMCVNVCPAGVFVY 63

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
               R         +  +   +C+YCG C + CP  A+    +F  A+    +
Sbjct: 64  LPEIR---------KVALWTARCVYCGQCVDVCPTGALQLSKDFLLASYDNHD 107


>gi|14520927|ref|NP_126402.1| NADH-plastoquinone oxidoreductase subunit [Pyrococcus abyssi GE5]
 gi|5458144|emb|CAB49633.1| cooX-like CO-induced hydrogenase related, subunit X [Pyrococcus
           abyssi GE5]
          Length = 138

 Score = 74.0 bits (180), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 17/120 (14%)

Query: 20  FFLCLRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78
               ++  FK   T  +P  E       FRG+           +C+ C++C  +CPA   
Sbjct: 7   LSTVIKNLFKPPATNPFPKTEPVPVPENFRGKIVYNVD-----KCVGCRMCVTVCPAGVF 61

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR--QELYY 136
                 R         +  +   +C++C  C + CP  A+     F  A+  +  ++  Y
Sbjct: 62  VYLPEIR---------KVALWTGRCVFCKQCVDVCPTGALQMSDEFLLASYDKYDEKFIY 112


>gi|159040890|ref|YP_001540142.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Caldivirga maquilingensis IC-167]
 gi|157919725|gb|ABW01152.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Caldivirga
           maquilingensis IC-167]
          Length = 166

 Score = 74.0 bits (180), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 51/126 (40%), Gaps = 12/126 (9%)

Query: 17  VGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
           + A  + ++ F K  + TI YP E+     RFRG        N  E+CI+C  C   CP 
Sbjct: 17  LNALAVGVKEFVKPTRFTIQYPRERRWVIDRFRGFMI-----NDVEKCISCFQCAWACPV 71

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            AI +   P             I   +CI C  C +ACPV ++      + A    +   
Sbjct: 72  NAIFMYRAPNGKYYPG------IRYEQCILCHFCVDACPVGSLQGTTISDGAFPDLESTV 125

Query: 136 YDKERL 141
           +  E +
Sbjct: 126 FKPEDM 131


>gi|189502386|ref|YP_001958103.1| hypothetical protein Aasi_1026 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497827|gb|ACE06374.1| hypothetical protein Aasi_1026 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 184

 Score = 74.0 bits (180), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 37/108 (34%), Positives = 50/108 (46%), Gaps = 14/108 (12%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH---- 87
            T+ YP EK       RG + L    N  E CI C  C  ICP   I IES P       
Sbjct: 47  ITLQYPHEKLPVPS--RGRYKL---HNAIEDCIVCDKCAKICPVDCIEIESIPAPDVFGI 101

Query: 88  --DGTRRTVR---YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
             +G ++ +    +DIDM KC +CGLC   CP + +   P ++F+   
Sbjct: 102 TSNGMKKRIHAAKFDIDMAKCCFCGLCTTVCPTECLTMTPEYDFSVFD 149


>gi|256826556|ref|YP_003150515.1| NADH:ubiquinone oxidoreductase chain I-like protein
           [Cryptobacterium curtum DSM 15641]
 gi|256582699|gb|ACU93833.1| NADH:ubiquinone oxidoreductase chain I-like protein
           [Cryptobacterium curtum DSM 15641]
          Length = 181

 Score = 74.0 bits (180), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 51/148 (34%), Gaps = 11/148 (7%)

Query: 17  VGAFFLCLRYFFK-AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
           + A    LR   K    TI YPF    T P  RG+                        A
Sbjct: 1   MKAMLKTLRNILKTGDATIKYPFAPYDTVPYMRGKPEHDLEKCIACA----------ACA 50

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A    +     D +  T+ + ID  +CI+CG C+E CPV AI     FE A  ++ +L 
Sbjct: 51  VACPPNAIQMPTDLSAGTITWSIDYGRCIFCGRCEEVCPVVAIKLTNEFELAVASKSDLI 110

Query: 136 YDKERLLNNGDRWESEIVRNIVTDSPYR 163
            D    L    +           D   R
Sbjct: 111 EDCTYTLQKCSKCGQYFAPRKEVDYAVR 138


>gi|261342162|ref|ZP_05970020.1| formate hydrogenlyase subunit 6 [Enterobacter cancerogenus ATCC
           35316]
 gi|288315495|gb|EFC54433.1| formate hydrogenlyase subunit 6 [Enterobacter cancerogenus ATCC
           35316]
          Length = 180

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 10/128 (7%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
           T  YP E       FRG+       +  ++CI C  C   CP+ A+T+E   +       
Sbjct: 15  TSRYPLEPLPVDKNFRGKPE-----HNPQQCIGCAACVNACPSNALTVEIDLKSG----- 64

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEI 152
            + +  ++ +CI+CG C+E CP  AI     +E A   +++       +L N    +   
Sbjct: 65  ELAWQFNLGRCIFCGRCEEVCPTAAIRLSQEYELAVWKKEDFLQQSRFVLCNCRVCKRPF 124

Query: 153 VRNIVTDS 160
                 D 
Sbjct: 125 AVQKEIDY 132


>gi|126465959|ref|YP_001041068.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Staphylothermus marinus F1]
 gi|126014782|gb|ABN70160.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Staphylothermus marinus F1]
          Length = 175

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 12/103 (11%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T+ YP++K   +  FRG+ ++        +CIAC  C  +CP  A+T+           
Sbjct: 22  VTVLYPYQKPLITSEFRGKISI-----DPSKCIACGACVNVCPPNALTLSKQENI----- 71

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134
             +  +  + +CI+CG C E CPV AI     FE A+    +L
Sbjct: 72  --IMINYFIGRCIFCGRCAEVCPVGAITVTNEFELASTRIDDL 112


>gi|240102116|ref|YP_002958424.1| formate hydrogenlyase II subunit G (Mhy2G) [Thermococcus
           gammatolerans EJ3]
 gi|239909669|gb|ACS32560.1| formate hydrogenlyase II subunit G (Mhy2G) [Thermococcus
           gammatolerans EJ3]
          Length = 165

 Score = 73.6 bits (179), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 36/104 (34%), Positives = 47/104 (45%), Gaps = 10/104 (9%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T+ YPF K    P +RG   +         CI C  C   CPA A+      R  D  +
Sbjct: 3   VTLKYPFVKIEAPPEYRGVPHI-----NPRLCIGCGACVNACPADAL-----LRIDDYEK 52

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            T +  +D+ +CI C  C EACP  AI    NFE AT  R++  
Sbjct: 53  GTRKIVLDVGRCIRCARCDEACPTGAIRMTRNFEVATLDRKDHV 96


>gi|18312729|ref|NP_559396.1| NADH dehydrogenase subunit I [Pyrobaculum aerophilum str. IM2]
 gi|18160208|gb|AAL63578.1| NADH-ubiquinone oxidoreductase subunit [Pyrobaculum aerophilum str.
           IM2]
          Length = 155

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 38/125 (30%), Positives = 54/125 (43%), Gaps = 13/125 (10%)

Query: 17  VGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
           + AF + ++ F K  + TI YP+EK     R RG   L       E+C +C LC  ICP 
Sbjct: 12  IDAFRVAVKNFVKPERITIYYPYEKLEY-GRMRGWIGLW-----TEKCTSCFLCARICPT 65

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            AI +   P             ID  +CI C  C + CP +A+      E A    +E+ 
Sbjct: 66  NAIKMYLAPNTKRYPG------IDYGRCIMCHFCIDICPTEALYPTDIMELAWYDYKEMI 119

Query: 136 YDKER 140
           Y  + 
Sbjct: 120 YTPDM 124


>gi|212223421|ref|YP_002306657.1| Formate hydrogen lyase subunit 6 [Thermococcus onnurineus NA1]
 gi|212008378|gb|ACJ15760.1| Formate hydrogen lyase subunit 6 [Thermococcus onnurineus NA1]
          Length = 205

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/107 (30%), Positives = 43/107 (40%), Gaps = 10/107 (9%)

Query: 29  KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88
           KA  T +YPF      P +RG   +         CI C  C   CP  A+TIE       
Sbjct: 23  KAPVTTSYPFVDIEKPPEYRGIPRI-----DPHLCIGCGACVRACPPDALTIEWDFENGR 77

Query: 89  GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
                 R   +  +CI C  C E CP  A+     FE AT  +++L 
Sbjct: 78  -----KRIVFNAARCIRCHRCVEVCPTGAMQGTTRFEIATPNKEDLI 119


>gi|296104396|ref|YP_003614542.1| formate hydrogenlyase complex iron-sulfur subunit [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295058855|gb|ADF63593.1| formate hydrogenlyase complex iron-sulfur subunit [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 180

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 10/128 (7%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
           T  YP E       FRG+       +  ++CI C  C   CP+ A+T+E+  +       
Sbjct: 15  TSRYPLEPMPVDKNFRGKPE-----HNPQQCIGCAACVNACPSNALTVETDLKTG----- 64

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEI 152
            + +  ++ +CI+CG C+E CP  AI     +E A   +++        L N    +   
Sbjct: 65  ELAWQFNLGRCIFCGRCEEVCPTVAIRLSQEYELAVWKKEDFLQQSRFALCNCRVCKRPF 124

Query: 153 VRNIVTDS 160
                 D 
Sbjct: 125 AVQKEIDY 132


>gi|119873120|ref|YP_931127.1| NADH dehydrogenase subunit I [Pyrobaculum islandicum DSM 4184]
 gi|119674528|gb|ABL88784.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           islandicum DSM 4184]
          Length = 159

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/125 (29%), Positives = 51/125 (40%), Gaps = 13/125 (10%)

Query: 17  VGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
           + A  +  R F K  + TI YP+EK       RG   L       E+C +C +C  ICPA
Sbjct: 16  IDAISIAARNFVKPERITIYYPYEKLEYGRA-RGWIGLL-----VEKCTSCMMCARICPA 69

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            AI +   P             ID  +CI C  C + CP +A+      E      +E+ 
Sbjct: 70  NAIKMYVAPNGKRYPG------IDYGRCIMCHFCIDVCPTEALFPTDIKELTWYDSKEML 123

Query: 136 YDKER 140
           Y  E 
Sbjct: 124 YTPEM 128


>gi|295097301|emb|CBK86391.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
           kD subunit (chain I) [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 180

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 10/128 (7%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
           T +YP E       FRG+       +  ++CI C  C   CP+ A+T+E+  +  +    
Sbjct: 15  TSSYPLEPIPVDKNFRGKPE-----HNPQQCIGCAACVNACPSNALTVETDLKTGE---- 65

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEI 152
            + +  ++ +CI+CG C+E CP  AI     +E A   +++        L N    +   
Sbjct: 66  -LAWQFNLGRCIFCGRCEEVCPTVAIRLSQEYELAVWKKEDFLQQSRFALCNCRVCKRPF 124

Query: 153 VRNIVTDS 160
                 D 
Sbjct: 125 AVQKEIDY 132


>gi|289804003|ref|ZP_06534632.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Typhi str. AG3]
          Length = 154

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 10/129 (7%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T +YP E  +    FRG+       +  ++CI C  C   CP+ A+T+E+    ++   
Sbjct: 14  ATSSYPLEPIAVDKNFRGKPE-----HNPQQCIGCAACVNACPSNALTVETDLATNE--- 65

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
             + +  ++ +CI+CG C+E CP  AI     +E A   +++        L N       
Sbjct: 66  --LAWQFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRP 123

Query: 152 IVRNIVTDS 160
                  D 
Sbjct: 124 FAVQKEIDY 132


>gi|320101197|ref|YP_004176789.1| NuoI NADH dehydrogenase I subunit I [Desulfurococcus mucosus DSM
           2162]
 gi|319753549|gb|ADV65307.1| NuoI NADH dehydrogenase I, subunit I [Desulfurococcus mucosus DSM
           2162]
          Length = 156

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/121 (28%), Positives = 49/121 (40%), Gaps = 8/121 (6%)

Query: 24  LRYFFKAKTTINYPFEKGST-SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
           LRY  K   T   P       +P  RG H L        +C  C +C+ +CPA +I +  
Sbjct: 10  LRYLLKRPYTRQVPRVDTPFKTPVTRGGHVL-----DMAKCTGCSMCQQVCPANSIDMVV 64

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG--PNFEFATETRQELYYDKER 140
               +    R     ID+ KC +CGLC E CP +A+       +E  T  +  L      
Sbjct: 65  VEGEYPQNPRKRFPRIDLNKCTFCGLCVEYCPFNALSMTTATGYELFTTDKSTLLKQPMD 124

Query: 141 L 141
           L
Sbjct: 125 L 125


>gi|153872085|ref|ZP_02001079.1| glutamate synthase small subunit [Beggiatoa sp. PS]
 gi|152071448|gb|EDN68920.1| glutamate synthase small subunit [Beggiatoa sp. PS]
          Length = 598

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 10/105 (9%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            L Y  +   T+  P E    +P +RG H      N  E+CI C  C  IC   AI +  
Sbjct: 10  ALSYLGREPVTL--PIEPRPAAPIYRGFHL-----NDWEKCIGCGTCATICDNYAINMVE 62

Query: 83  GPR---CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
                       +  R  ID  +C +C LC + CP  +I     +
Sbjct: 63  IKDLPSDPIKGIKPRRPAIDYGRCCWCALCVDICPTGSISLSREY 107



 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 2/24 (8%)

Query: 101 IKCIYCGLCQEACPVDAIVEGPNF 124
            +CI CG+C EACP +  +  P +
Sbjct: 180 SRCIQCGMCHEACPTN--MHAPEY 201



 Score = 35.5 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 16/47 (34%), Gaps = 1/47 (2%)

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
            PR      R    +    KCI CG C   C   AI      +  ++
Sbjct: 24  EPRPAAPIYRGFHLNDW-EKCIGCGTCATICDNYAINMVEIKDLPSD 69


>gi|126459132|ref|YP_001055410.1| NADH dehydrogenase subunit I [Pyrobaculum calidifontis JCM 11548]
 gi|126248853|gb|ABO07944.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           calidifontis JCM 11548]
          Length = 155

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 40/125 (32%), Positives = 52/125 (41%), Gaps = 13/125 (10%)

Query: 17  VGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
           VGA  +  R F K  + TI YP+EK     R RG   L       E+C +C LC  ICP 
Sbjct: 11  VGALRVAARNFVKPERITIYYPYEKLDY-GRMRGWIGLW-----TEKCTSCMLCARICPT 64

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            AI +   P             ID  +CI C  C + CP DA+      E      +E+ 
Sbjct: 65  NAIKMYLAPNNKRYPG------IDYGRCIMCHFCIDICPTDALYPTDIKELTWYDYREMV 118

Query: 136 YDKER 140
           Y  + 
Sbjct: 119 YTPDM 123


>gi|187251535|ref|YP_001876017.1| ech hydrogenase subunit F [Elusimicrobium minutum Pei191]
 gi|186971695|gb|ACC98680.1| Ech hydrogenase subunit F [Elusimicrobium minutum Pei191]
          Length = 140

 Score = 72.8 bits (177), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/128 (28%), Positives = 53/128 (41%), Gaps = 15/128 (11%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           + A    +   F   +TI YP++K  T+  +R            E CI C +C   CPA 
Sbjct: 5   LKALKEVINNLFTKHSTIEYPYKKIETAETYRARIKFT-----PENCIGCNICVRNCPAN 59

Query: 77  AITIES----------GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
           AI I                    +R  +  ID+ +CIYC  C E+CP  A+     FE 
Sbjct: 60  AIKITQINPQDKPQALEGGKVIPAKRKFKCVIDLGRCIYCAQCVESCPKKALYASTEFEL 119

Query: 127 ATETRQEL 134
           A   +++L
Sbjct: 120 AAFDKKDL 127


>gi|262043974|ref|ZP_06017058.1| formate hydrogenlyase subunit 6 [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259038700|gb|EEW39887.1| formate hydrogenlyase subunit 6 [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 180

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 10/129 (7%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T  YP E       FRG+          ++CI C  C   CP+ A+T+E     +    
Sbjct: 14  ATHAYPLEPMPVDKNFRGKPEHT-----PQQCIGCAACVNACPSNALTVEIDLATNQ--- 65

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
             + +  ++ +CI+CG C+E CP  AI   P +E A   +++        + +    +  
Sbjct: 66  --LAWQFNLGRCIFCGRCEEVCPTAAIKLSPEYELAVWKKEDFLQQSRFAICHCRECQRP 123

Query: 152 IVRNIVTDS 160
                  D 
Sbjct: 124 FAVQKEIDY 132


>gi|260892455|ref|YP_003238552.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ammonifex
           degensii KC4]
 gi|260864596|gb|ACX51702.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ammonifex
           degensii KC4]
          Length = 127

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/115 (28%), Positives = 42/115 (36%), Gaps = 6/115 (5%)

Query: 19  AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78
              + LR  F    T  YPFE+       RG+          E C  C  CE  CP  AI
Sbjct: 1   MLGVVLRNLFTGPVTRRYPFERRQYFDGSRGKLLFH-----PEYCEFCGECERACPTGAI 55

Query: 79  TIESGPRCHDGTRRTVRYD-IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
            +++           V     D  KCI+CG C EACP  AI            ++
Sbjct: 56  ELDTAWDTRRQDYSIVWLRRYDPFKCIFCGNCVEACPYGAIELAEEPAAPGYRKE 110


>gi|288933890|ref|YP_003437949.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Klebsiella
           variicola At-22]
 gi|288888619|gb|ADC56937.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Klebsiella
           variicola At-22]
          Length = 180

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 52/129 (40%), Gaps = 10/129 (7%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T  YP E       FRG+          ++CI C  C   CP+ A+T+E+    +    
Sbjct: 14  ATHAYPLEPMPVDKNFRGKPEHT-----PQQCIGCAACVNACPSNALTVETDLTTNQ--- 65

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
             + +  ++ +CI+CG C+E CP  AI   P +E A   +++        + +    +  
Sbjct: 66  --LAWQFNLGRCIFCGRCEEVCPTAAIKLSPEYELAVWKKEDFLQQSRFAICHCRECQRP 123

Query: 152 IVRNIVTDS 160
                  D 
Sbjct: 124 FAVQKEIDY 132


>gi|290511029|ref|ZP_06550398.1| formate hydrogenlyase complex iron-sulfur subunit hycF [Klebsiella
           sp. 1_1_55]
 gi|289776022|gb|EFD84021.1| formate hydrogenlyase complex iron-sulfur subunit hycF [Klebsiella
           sp. 1_1_55]
          Length = 180

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 52/129 (40%), Gaps = 10/129 (7%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T  YP E       FRG+          ++CI C  C   CP+ A+T+E+    +    
Sbjct: 14  ATHAYPLEPMPVDKNFRGKPEHT-----PQQCIGCAACVNACPSNALTVETDLTTNQ--- 65

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
             + +  ++ +CI+CG C+E CP  AI   P +E A   +++        + +    +  
Sbjct: 66  --LAWQFNLGRCIFCGRCEEVCPTAAIKLSPEYELAVWKKEDFLQQSRFAICHCRECQRP 123

Query: 152 IVRNIVTDS 160
                  D 
Sbjct: 124 FAVQKEIDY 132


>gi|238896177|ref|YP_002920913.1| formate hydrogenlyase complex iron-sulfur subunit [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238548495|dbj|BAH64846.1| hydrogenase 4 Fe-S subunit [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 180

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 10/129 (7%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T  YP E       FRG+          ++CI C  C   CP+ A+T+E     +    
Sbjct: 14  ATHAYPLEPMPVDKNFRGKPEHT-----PQQCIGCAACVNACPSNALTVEIDLAANQ--- 65

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
             + +  ++ +CI+CG C+E CP  AI   P +E A   +++        + +    +  
Sbjct: 66  --LAWQFNLGRCIFCGRCEEVCPTAAIKLSPEYELAVWKKEDFLQQSRFAICHCRECQRP 123

Query: 152 IVRNIVTDS 160
                  D 
Sbjct: 124 FAVQKEIDY 132


>gi|145590888|ref|YP_001152890.1| NADH dehydrogenase subunit I [Pyrobaculum arsenaticum DSM 13514]
 gi|145282656|gb|ABP50238.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           arsenaticum DSM 13514]
          Length = 154

 Score = 72.4 bits (176), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 38/125 (30%), Positives = 52/125 (41%), Gaps = 13/125 (10%)

Query: 17  VGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
           + A  +  + F K  + TI YP+EK     R RG   L       E+C +C LC  ICP 
Sbjct: 11  IDAMAVAAKNFAKPERITIYYPYEKLEY-VRMRGWIGLW-----TEKCTSCMLCARICPT 64

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            AI +   P             ID  +CI C  C + CP DA+      E A    +E+ 
Sbjct: 65  NAIKMYLAPNNKRYPG------IDYGRCIMCHFCIDVCPTDALYGTGIKELAWYDYKEMI 118

Query: 136 YDKER 140
           Y  + 
Sbjct: 119 YTPDM 123


>gi|152971579|ref|YP_001336688.1| formate hydrogenlyase complex iron-sulfur subunit [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|330008024|ref|ZP_08306140.1| 4Fe-4S binding domain protein [Klebsiella sp. MS 92-3]
 gi|150956428|gb|ABR78458.1| hydrogenase 4 Fe-S subunit [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|328535255|gb|EGF61747.1| 4Fe-4S binding domain protein [Klebsiella sp. MS 92-3]
          Length = 180

 Score = 72.1 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 10/129 (7%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T  YP E       FRG+          ++CI C  C   CP+ A+T+E     +    
Sbjct: 14  ATHAYPLEPMPVDKNFRGKPEHT-----PQQCIGCAACVNACPSNALTVEIDLATNQ--- 65

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
             + +  ++ +CI+CG C+E CP  AI   P +E A   +++        + +    +  
Sbjct: 66  --LAWQFNLGRCIFCGRCEEVCPTAAIKLSPEYELAVWKKEDFLQQSRFAICHCRECQRP 123

Query: 152 IVRNIVTDS 160
                  D 
Sbjct: 124 FAVQKEIDY 132


>gi|14591231|ref|NP_143308.1| NADH-plastoquinone oxidoreductase subunit [Pyrococcus horikoshii
           OT3]
 gi|3257864|dbj|BAA30547.1| 136aa long hypothetical NADH-plastoquinone oxidoreductase subunit
           [Pyrococcus horikoshii OT3]
          Length = 136

 Score = 72.1 bits (175), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 17/120 (14%)

Query: 20  FFLCLRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78
               ++  FK+  T  +P  E       FRG            +C+ C++C  +CPA   
Sbjct: 7   LPTVIKNLFKSPATNPFPKTEPIPVPDNFRGRIVYNVD-----KCVGCRMCVTVCPAGVF 61

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR--QELYY 136
                 R         +  +   +C++C  C + CP  A+     F  A+  +  ++  Y
Sbjct: 62  VYIPEIR---------KVALWTGRCVFCKQCVDVCPTGALQMSDEFLLASYDKYDEKFIY 112


>gi|15803011|ref|NP_289041.1| hydrogenase 4 subunit H [Escherichia coli O157:H7 EDL933]
 gi|15832604|ref|NP_311377.1| hydrogenase 4 subunit H [Escherichia coli O157:H7 str. Sakai]
 gi|168748456|ref|ZP_02773478.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4113]
 gi|168756257|ref|ZP_02781264.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4401]
 gi|168761094|ref|ZP_02786101.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4501]
 gi|168768577|ref|ZP_02793584.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4486]
 gi|168773601|ref|ZP_02798608.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4196]
 gi|168778451|ref|ZP_02803458.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4076]
 gi|168787831|ref|ZP_02812838.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC869]
 gi|168798856|ref|ZP_02823863.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC508]
 gi|195936631|ref|ZP_03082013.1| hydrogenase 4 subunit H [Escherichia coli O157:H7 str. EC4024]
 gi|208807802|ref|ZP_03250139.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208813770|ref|ZP_03255099.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820809|ref|ZP_03261129.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209399054|ref|YP_002271957.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4115]
 gi|217327102|ref|ZP_03443185.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|254794433|ref|YP_003079270.1| hydrogenase 4 subunit H [Escherichia coli O157:H7 str. TW14359]
 gi|261223079|ref|ZP_05937360.1| hydrogenase 4, Fe-S subunit [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261259369|ref|ZP_05951902.1| hydrogenase 4, Fe-S subunit [Escherichia coli O157:H7 str. FRIK966]
 gi|291283708|ref|YP_003500526.1| Iron-sulfur cluster-binding protein [Escherichia coli O55:H7 str.
           CB9615]
 gi|12516873|gb|AAG57598.1|AE005478_8 hydrogenase 4 Fe-S subunit [Escherichia coli O157:H7 str. EDL933]
 gi|13362820|dbj|BAB36773.1| hydrogenase 4 Fe-S subunit [Escherichia coli O157:H7 str. Sakai]
 gi|187770726|gb|EDU34570.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4196]
 gi|188017123|gb|EDU55245.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4113]
 gi|189003184|gb|EDU72170.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4076]
 gi|189356628|gb|EDU75047.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362200|gb|EDU80619.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4486]
 gi|189368360|gb|EDU86776.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4501]
 gi|189372312|gb|EDU90728.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC869]
 gi|189378647|gb|EDU97063.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC508]
 gi|208727603|gb|EDZ77204.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4206]
 gi|208735047|gb|EDZ83734.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740932|gb|EDZ88614.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4042]
 gi|209160454|gb|ACI37887.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           EC4115]
 gi|209763628|gb|ACI80126.1| hydrogenase 4 Fe-S subunit [Escherichia coli]
 gi|209763630|gb|ACI80127.1| hydrogenase 4 Fe-S subunit [Escherichia coli]
 gi|209763632|gb|ACI80128.1| hydrogenase 4 Fe-S subunit [Escherichia coli]
 gi|209763634|gb|ACI80129.1| hydrogenase 4 Fe-S subunit [Escherichia coli]
 gi|209763636|gb|ACI80130.1| hydrogenase 4 Fe-S subunit [Escherichia coli]
 gi|217319469|gb|EEC27894.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str.
           TW14588]
 gi|254593833|gb|ACT73194.1| hydrogenase 4, Fe-S subunit [Escherichia coli O157:H7 str. TW14359]
 gi|290763581|gb|ADD57542.1| Iron-sulfur cluster-binding protein [Escherichia coli O55:H7 str.
           CB9615]
 gi|320188820|gb|EFW63479.1| Hydrogenase-4 component H [Escherichia coli O157:H7 str. EC1212]
 gi|320646274|gb|EFX15201.1| hydrogenase 4 subunit H [Escherichia coli O157:H- str. 493-89]
 gi|320657165|gb|EFX24974.1| hydrogenase 4 subunit H [Escherichia coli O55:H7 str. 3256-97 TW
           07815]
 gi|320662771|gb|EFX30103.1| hydrogenase 4 subunit H [Escherichia coli O55:H7 str. USDA 5905]
 gi|320667575|gb|EFX34490.1| hydrogenase 4 subunit H [Escherichia coli O157:H7 str. LSU-61]
 gi|326340283|gb|EGD64087.1| Hydrogenase-4 component H [Escherichia coli O157:H7 str. 1125]
 gi|326344968|gb|EGD68712.1| Hydrogenase-4 component H [Escherichia coli O157:H7 str. 1044]
          Length = 181

 Score = 72.1 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/138 (26%), Positives = 52/138 (37%), Gaps = 13/138 (9%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +      +R       T+ YPF     SP FRG+  L           A       CP 
Sbjct: 1   MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACGACA-----CACPT 52

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A+TI++  + +        + + + +CIYCG C+E CP  AI    NFE     + +LY
Sbjct: 53  NALTIQTDDQQNS-----RTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 107

Query: 136 YDKERLLNNGDRWESEIV 153
                 L    R E    
Sbjct: 108 TRATFHLQRCSRCERPFA 125


>gi|18977808|ref|NP_579165.1| NADH-plastoquinone oxidoreductase subunit [Pyrococcus furiosus DSM
           3638]
 gi|18893557|gb|AAL81560.1| mbh14 iron-sulfur protein (like HycF, EchF, CooX) [Pyrococcus
           furiosus DSM 3638]
          Length = 139

 Score = 72.1 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 27/145 (18%), Positives = 49/145 (33%), Gaps = 18/145 (12%)

Query: 20  FFLCLRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78
               ++  FK   T  +P  E       FRG+           +C+ C++C  +CPA   
Sbjct: 7   LPTVIKNLFKKPATNPFPKTEPVPVPEDFRGKLVYNVD-----KCVGCRMCVTVCPAGVF 61

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE--LYY 136
                 R         +  + + +C+ C  C + CP  A+     F  A+  + +  L Y
Sbjct: 62  VYLPEIR---------KVTLWIGRCVMCKQCVDVCPTAALQMSDEFLLASYDKYDAKLIY 112

Query: 137 -DKERLLNNGDRWESEIVRNIVTDS 160
              E   +   + E          +
Sbjct: 113 LTPEEAEDIKKKLEEANKAKAEKQA 137


>gi|21673601|ref|NP_661666.1| NADH dehydrogenase I, 23 kDa subunit [Chlorobium tepidum TLS]
 gi|21646715|gb|AAM72008.1| NADH dehydrogenase I, 23 kDA subunit [Chlorobium tepidum TLS]
          Length = 216

 Score = 72.1 bits (175), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/170 (24%), Positives = 60/170 (35%), Gaps = 39/170 (22%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKT--------------------TINYPFEK 40
           M  +  N+    +        + L++FF A                      T+ YP E 
Sbjct: 1   MSEYFSNIKTS-VTTIATGMGITLKHFFNAVKRKGDAGIDDADYFRQVDGLCTLQYPKEA 59

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH------------- 87
             T P   G + L    N    CI CK CE  CP + ITIE+                  
Sbjct: 60  IPTPP--HGRYRLYCNIND---CIGCKQCERACPVECITIETIKTTSDDLEACGKTSGGQ 114

Query: 88  DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
                   +DID+ KC+ CG+CQ  CP D +   P  +F+      + Y 
Sbjct: 115 QKRMWVPVFDIDLAKCMTCGICQSVCPTDCLYHTPVADFSEFDVSNMMYH 164


>gi|320640992|gb|EFX10476.1| hydrogenase 4 subunit H [Escherichia coli O157:H7 str. G5101]
          Length = 181

 Score = 71.7 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/138 (26%), Positives = 52/138 (37%), Gaps = 13/138 (9%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +      +R       T+ YPF     SP FRG+  L           A       CP 
Sbjct: 1   MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACGACA-----CACPT 52

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A+TI++  + +        + + + +CIYCG C+E CP  AI    NFE     + +LY
Sbjct: 53  NALTIQTDDQQNS-----RTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 107

Query: 136 YDKERLLNNGDRWESEIV 153
                 L    R E    
Sbjct: 108 TRATFHLQRCSRCERPFA 125


>gi|148791383|gb|ABR12483.1| hydrogenase 4 Fe-S subunit [Klebsiella oxytoca]
          Length = 180

 Score = 71.7 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 10/104 (9%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T +YP E       FRG+       +  ++CI C  C   CP+ A+T+E+    +    
Sbjct: 14  ATHSYPLEPMPVDKNFRGKPE-----HNPQQCIGCAACVNACPSNALTVETDLAANQ--- 65

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
             + +  ++ +CI+CG C+E CP  AI     +E A   +++  
Sbjct: 66  --LGWQFNLGRCIFCGRCEEVCPTAAIRLSQEYELAVWKKEDFL 107


>gi|296242763|ref|YP_003650250.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermosphaera aggregans DSM 11486]
 gi|296095347|gb|ADG91298.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermosphaera
           aggregans DSM 11486]
          Length = 160

 Score = 71.7 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/116 (26%), Positives = 45/116 (38%), Gaps = 8/116 (6%)

Query: 20  FFLCLRYFFKAKTTINYPFEKGST-SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78
               L++  K   T   P +     +   RG H L        +C  C +C+ +CPA  I
Sbjct: 6   LAKSLKHLAKNPYTRLVPRKSSPFKTDSIRGAHLL-----DMSKCTGCSMCQQVCPAACI 60

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN--FEFATETRQ 132
            +      +    R     ID  KC +CGLC E CPV A+       +E  T  + 
Sbjct: 61  DMVVVEGDYSQNPRKRFPRIDHSKCTFCGLCVEYCPVAALSMTTVTGYELFTTNKD 116


>gi|168262038|ref|ZP_02684011.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|205349072|gb|EDZ35703.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 180

 Score = 71.7 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 10/129 (7%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T +YP E  +    FRG+       +  ++CI C  C   CP+ A+T+E+    ++   
Sbjct: 14  ATSSYPLEPIAVDKNFRGKPE-----HNPQQCIGCAACVNACPSNALTVETDLATNE--- 65

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
             + +  ++ +CI+CG C+E CP  AI     +E A   +++        L N       
Sbjct: 66  --LAWQFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRP 123

Query: 152 IVRNIVTDS 160
                  D 
Sbjct: 124 FAVQKEIDY 132


>gi|324497291|gb|ADY39446.1| formate hydrogenlyase complex iron-sulfur subunit [bacterium
           enrichment culture clone P24-9H]
          Length = 180

 Score = 71.7 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 10/103 (9%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
           T +YP E       FRG+       +  ++CI C  C   CP+ A+T+E+  +  +    
Sbjct: 15  TSSYPLEPMPVDKNFRGKPE-----HNPQQCIGCAACVNACPSNALTVETDLKTGE---- 65

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            + +  ++ +CI+CG C+E CP  AI     +E A   +++  
Sbjct: 66  -LAWQFNLGRCIFCGRCEEVCPTVAIRLSQEYELAVWKKEDFL 107


>gi|239907412|ref|YP_002954153.1| iron-sulfur binding protein [Desulfovibrio magneticus RS-1]
 gi|239797278|dbj|BAH76267.1| iron-sulfur binding protein [Desulfovibrio magneticus RS-1]
          Length = 167

 Score = 71.7 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 34/142 (23%), Positives = 53/142 (37%), Gaps = 17/142 (11%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE--ERCIACKLCE 70
           LK       +  + F + + T+ YP ++      FRG   L    +     RC+AC  C 
Sbjct: 14  LKSLFVGLGITGKAFCQPQVTVIYPKQEVDNLSTFRGHVELVGKEDDPSVPRCVACGACV 73

Query: 71  AICPAQAIT---------------IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
             CP+  +T               +  GP    G++      +D   C  CG C + CPV
Sbjct: 74  KACPSDCLTILCPVPAKEGQEDAPMAMGPAPQKGSKTPGAVIVDFSLCSLCGQCAKTCPV 133

Query: 116 DAIVEGPNFEFATETRQELYYD 137
           D++    N       R+E   D
Sbjct: 134 DSLRFSDNPYMVALDRKEFRID 155


>gi|207109996|ref|ZP_03244158.1| NADH dehydrogenase subunit I [Helicobacter pylori HPKX_438_CA4C1]
          Length = 138

 Score = 71.7 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 33/73 (45%), Positives = 42/73 (57%), Gaps = 1/73 (1%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCI C LCE IC +  I I +     D  ++   Y I++ +CIYCGLC E CP  AIV 
Sbjct: 2   ERCIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVM 60

Query: 121 GPNFEFATETRQE 133
           G  FE A+  R +
Sbjct: 61  GNRFENASTQRSQ 73


>gi|168235880|ref|ZP_02660938.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194738376|ref|YP_002115801.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|194713878|gb|ACF93099.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197290888|gb|EDY30242.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 180

 Score = 71.7 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 10/129 (7%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T +YP E  +    FRG+       +  ++CI C  C   CP+ A+T+E+    ++   
Sbjct: 14  ATSSYPLEPIAVDKNFRGKPE-----HNPQQCIGCAACVNACPSNALTVETDLATNE--- 65

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
             + +  ++ +CI+CG C+E CP  AI     +E A   +++        L N       
Sbjct: 66  --LAWQFNLSRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRP 123

Query: 152 IVRNIVTDS 160
                  D 
Sbjct: 124 FAVQKEIDY 132


>gi|293415751|ref|ZP_06658394.1| hydrogenase 4 subunit H [Escherichia coli B185]
 gi|291433399|gb|EFF06378.1| hydrogenase 4 subunit H [Escherichia coli B185]
          Length = 181

 Score = 71.7 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/138 (26%), Positives = 52/138 (37%), Gaps = 13/138 (9%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +      +R       T+ YPF     SP FRG+  L           A       CP 
Sbjct: 1   MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLMLSQCIACGACA-----CACPT 52

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A+TI++  + +        + + + +CIYCG C+E CP  AI    NFE     + +LY
Sbjct: 53  NALTIQTDDQQNS-----RTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 107

Query: 136 YDKERLLNNGDRWESEIV 153
                 L    R E    
Sbjct: 108 TRATFHLQRCSRCERPFA 125


>gi|149194129|ref|ZP_01871227.1| formate hydrogenlyase complex iron-sulfur subunit [Caminibacter
           mediatlanticus TB-2]
 gi|149136082|gb|EDM24560.1| formate hydrogenlyase complex iron-sulfur subunit [Caminibacter
           mediatlanticus TB-2]
          Length = 179

 Score = 71.7 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 40/131 (30%), Positives = 55/131 (41%), Gaps = 19/131 (14%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T +YPF        FRG+          E+CI C  C   CP  AI +           
Sbjct: 15  VTYDYPFGDYEVPDGFRGKP-----HYEYEKCIGCAACAIACPPNAINVSYLKGEDK--- 66

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
              +++ D  +CI+C  C+E CP  AI     FE A        ++KE LL  G   E E
Sbjct: 67  --SKWEFDCGRCIFCARCEEVCPTGAIYLTKEFENAVR------FNKEDLLQIG---ELE 115

Query: 152 IVRNIVTDSPY 162
           +VR  V + P+
Sbjct: 116 VVRCRVCNKPF 126


>gi|322614333|gb|EFY11264.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322621602|gb|EFY18455.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322624463|gb|EFY21296.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322628794|gb|EFY25577.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322633479|gb|EFY30221.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322635945|gb|EFY32653.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322639653|gb|EFY36338.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
 gi|322646836|gb|EFY43339.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322654784|gb|EFY51103.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322659004|gb|EFY55257.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322664429|gb|EFY60623.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322668322|gb|EFY64479.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322673698|gb|EFY69799.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322677759|gb|EFY73822.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322681411|gb|EFY77443.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322683813|gb|EFY79823.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|323193798|gb|EFZ79001.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323200268|gb|EFZ85350.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323203229|gb|EFZ88258.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323205524|gb|EFZ90489.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323210814|gb|EFZ95687.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323216338|gb|EGA01065.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323221086|gb|EGA05517.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323226907|gb|EGA11089.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323230809|gb|EGA14927.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323234840|gb|EGA18926.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323238879|gb|EGA22929.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323241579|gb|EGA25610.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323248274|gb|EGA32210.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323251142|gb|EGA35015.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323256025|gb|EGA39763.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323263160|gb|EGA46698.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323264335|gb|EGA47841.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323271162|gb|EGA54590.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
          Length = 180

 Score = 71.7 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 10/129 (7%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T +YP E  +    FRG+       +  ++CI C  C   CP+ A+T+E+    ++   
Sbjct: 14  ATSSYPLEPIAVDKNFRGKPE-----HNPQQCIGCAACVNACPSNALTVETDLATNE--- 65

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
             + +  ++ +CI+CG C+E CP  AI     +E A   +++        L N       
Sbjct: 66  --LAWQFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRP 123

Query: 152 IVRNIVTDS 160
                  D 
Sbjct: 124 FAVQKEIDY 132


>gi|254168032|ref|ZP_04874880.1| 4Fe-4S binding domain protein [Aciduliprofundum boonei T469]
 gi|254168105|ref|ZP_04874952.1| 4Fe-4S binding domain protein [Aciduliprofundum boonei T469]
 gi|289596051|ref|YP_003482747.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Aciduliprofundum boonei T469]
 gi|197622871|gb|EDY35439.1| 4Fe-4S binding domain protein [Aciduliprofundum boonei T469]
 gi|197623075|gb|EDY35642.1| 4Fe-4S binding domain protein [Aciduliprofundum boonei T469]
 gi|289533838|gb|ADD08185.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Aciduliprofundum boonei T469]
          Length = 160

 Score = 71.7 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 42/129 (32%), Positives = 59/129 (45%), Gaps = 14/129 (10%)

Query: 15  EFVGAFFLCLRYFFKAKTTINYPFEKGS-------TSPRFRGEHALRRYPNGEERCIACK 67
             V  F   LR+  KA  T+ YP++K +        + R+RG H      N  E CI C+
Sbjct: 2   SIVKPFK-ALRHLSKAPHTVKYPYQKHTDIEGLELPTERYRGFH-----SNNIETCIGCQ 55

Query: 68  LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           LC  +CPA AIT            +  R  ID  +C YCG C + CP  +++  P +E  
Sbjct: 56  LCSKVCPAAAITYVKIENSGKKGLKW-RPVIDYGRCCYCGFCTDICPTKSLILTPRYELV 114

Query: 128 TETRQELYY 136
           TE   E  +
Sbjct: 115 TENIDEFKF 123


>gi|16761625|ref|NP_457242.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 gi|16766154|ref|NP_461769.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|29143109|ref|NP_806451.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|161615751|ref|YP_001589716.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167550312|ref|ZP_02344069.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|167994152|ref|ZP_02575244.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168230909|ref|ZP_02655967.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168464026|ref|ZP_02697943.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168820464|ref|ZP_02832464.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194471670|ref|ZP_03077654.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|198243506|ref|YP_002216820.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|200388107|ref|ZP_03214719.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205353792|ref|YP_002227593.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|207858111|ref|YP_002244762.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|213052198|ref|ZP_03345076.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213426141|ref|ZP_03358891.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Typhi str. E02-1180]
 gi|213583851|ref|ZP_03365677.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-0664]
 gi|213610077|ref|ZP_03369903.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-2068]
 gi|213648117|ref|ZP_03378170.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Typhi str. J185]
 gi|289823876|ref|ZP_06543482.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
 gi|25324256|pir||AD0846 formate hydrogenlyase chain 6 [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16421394|gb|AAL21728.1| hydrogenase 3 [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|16503926|emb|CAD05955.1| formate hydrogenlyase subunit 6 [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29138742|gb|AAO70311.1| formate hydrogenlyase subunit 6 [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|161365115|gb|ABX68883.1| hypothetical protein SPAB_03542 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194458034|gb|EDX46873.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|195633645|gb|EDX52059.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197938022|gb|ACH75355.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|199605205|gb|EDZ03750.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205273573|emb|CAR38560.1| formate hydrogenlyase subunit 6 [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205324749|gb|EDZ12588.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205327931|gb|EDZ14695.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205334623|gb|EDZ21387.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205342812|gb|EDZ29576.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|206709914|emb|CAR34268.1| formate hydrogenlyase subunit 6 [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|261247984|emb|CBG25817.1| formate hydrogenlyase subunit 6 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267994971|gb|ACY89856.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           14028S]
 gi|301159408|emb|CBW18926.1| formate hydrogenlyase subunit 6 [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312913866|dbj|BAJ37840.1| formate hydrogenlyase iron-sulfur subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|320087251|emb|CBY97016.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8,
           mitochondrial NADH-ubiquinone oxidoreductase 23 kDa
           subunit; Complex I-23kD; CI-23kD; Flags: Precursor
           [Salmonella enterica subsp. enterica serovar Weltevreden
           str. 2007-60-3289-1]
 gi|321223401|gb|EFX48467.1| Formate hydrogenlyase complex 3 iron-sulfur protein [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           TN061786]
 gi|323131199|gb|ADX18629.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
 gi|326624579|gb|EGE30924.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
 gi|326628900|gb|EGE35243.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
 gi|332989720|gb|AEF08703.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Typhimurium str. UK-1]
          Length = 180

 Score = 71.7 bits (174), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 10/129 (7%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T +YP E  +    FRG+       +  ++CI C  C   CP+ A+T+E+    ++   
Sbjct: 14  ATSSYPLEPIAVDKNFRGKPE-----HNPQQCIGCAACVNACPSNALTVETDLATNE--- 65

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
             + +  ++ +CI+CG C+E CP  AI     +E A   +++        L N       
Sbjct: 66  --LAWQFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRP 123

Query: 152 IVRNIVTDS 160
                  D 
Sbjct: 124 FAVQKEIDY 132


>gi|257077083|ref|ZP_05571444.1| NADH dehydrogenase subunit I [Ferroplasma acidarmanus fer1]
          Length = 168

 Score = 71.7 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/142 (29%), Positives = 55/142 (38%), Gaps = 23/142 (16%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           + +     +Y F    T  YP +KG    RFR    L       E C+ C LC  ICP  
Sbjct: 24  LKSMLNMGKYVFTKPVTTQYPEDKGKIPERFRFRIFLV-----PEACVGCTLCSKICPNH 78

Query: 77  AITIES-----------------GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           +I +E                  G R +   +R +  D++   C  C  C+E CP DAI 
Sbjct: 79  SIKMEHWDLDRTGLEDNVVQTARGDRKNLQNKRNIYPDVNFGTCTVCRQCEEICPTDAIY 138

Query: 120 EGPNFEFATETRQELYYDKERL 141
               FE A  TR    Y  E L
Sbjct: 139 LTHQFEDA-RTRNSFTYSPEEL 159


>gi|212224746|ref|YP_002307982.1| NADH-plastoquinone oxidoreductase subunit [Thermococcus onnurineus
           NA1]
 gi|212009703|gb|ACJ17085.1| membrane bound hydrogenase, 4Fe-4S cluster-binding subunit
           [Thermococcus onnurineus NA1]
          Length = 152

 Score = 71.7 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 40/110 (36%), Gaps = 15/110 (13%)

Query: 22  LCLRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80
             LR  FK   T  +P  E       FRG+           +C+ C++C  +CPA     
Sbjct: 9   TVLRNMFKKPATNLFPATEPVPVPDNFRGQLKYNVD-----KCVGCRMCVTVCPAGVFVF 63

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
               R         +  +   +C+YC  C + CP  A+     F  A+  
Sbjct: 64  LPEIR---------KVALWTARCVYCSQCVDVCPTAALQMSDEFLLASYN 104


>gi|167045509|gb|ABZ10162.1| putative 4Fe-4S binding domain protein [uncultured marine
           microorganism HF4000_APKG10H11]
          Length = 160

 Score = 71.7 bits (174), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 34/136 (25%), Positives = 49/136 (36%), Gaps = 20/136 (14%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
           K  +    +  ++ F  + T+ YP+E    +  +RG   L       E CI C LCE  C
Sbjct: 13  KNIIQPIIVGFKHIFSKRHTMKYPYEYIPPTKNYRGRIEL-----DMETCINCMLCEKYC 67

Query: 74  PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP--------VDAIVEGPNFE 125
           P  AI                   ID  KC +CG C   CP           +       
Sbjct: 68  PDHAIQTYYVDGKKFPG-------IDFGKCCFCGYCVWVCPPNIRKGGEEVCLSLNEEHS 120

Query: 126 FATETRQELYYDKERL 141
           F +  + EL Y  ++L
Sbjct: 121 FPSFDKAELIYPPQKL 136


>gi|218884333|ref|YP_002428715.1| Hydrogenase 4 Fe-S subunit [Desulfurococcus kamchatkensis 1221n]
 gi|218765949|gb|ACL11348.1| Hydrogenase 4 Fe-S subunit [Desulfurococcus kamchatkensis 1221n]
          Length = 171

 Score = 71.3 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 12/105 (11%)

Query: 31  KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT 90
           + T  YPFE+   +P FRG+  +        +CI C  C   CP  A+ +          
Sbjct: 19  RVTRKYPFEEPLVTPDFRGKIEI-----NASKCIGCGACVNACPPNALQLIEDKEK---- 69

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
              +     + +CI+C  C + CP  AI     FE AT+   +LY
Sbjct: 70  ---LVLRYFIGRCIFCWRCIDVCPTGAIKGTREFELATDDISDLY 111


>gi|296241799|ref|YP_003649286.1| NADH dehydrogenase subunit I [Thermosphaera aggregans DSM 11486]
 gi|296094383|gb|ADG90334.1| NADH dehydrogenase subunit I [Thermosphaera aggregans DSM 11486]
          Length = 173

 Score = 71.3 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/107 (30%), Positives = 46/107 (42%), Gaps = 12/107 (11%)

Query: 31  KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT 90
           + T  YP+E+   SP FRG   +      E +CI C  C   CP  A+ + S        
Sbjct: 19  RVTKKYPYEEPLVSPDFRGLIEI-----DENKCIGCGACVNACPPNALQLISDKDT---- 69

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
                    + +CI+C  C + CPV AI     FE AT+   +LY  
Sbjct: 70  ---TVIRYFIGRCIFCWRCVDVCPVGAIKGTRKFELATDDASDLYVH 113


>gi|303247497|ref|ZP_07333769.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           fructosovorans JJ]
 gi|302491193|gb|EFL51085.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           fructosovorans JJ]
          Length = 184

 Score = 71.3 bits (173), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 53/141 (37%), Gaps = 16/141 (11%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE--RCIACKLCE 70
           LK  V    +  +   +   T+ YP E+      FRG   L          RC+AC  C 
Sbjct: 15  LKSLVIGLGVTGKALCEPGVTVIYPKEEVDNLATFRGHVELIGKDEDPAVARCVACGACV 74

Query: 71  AICPAQAITIES--------------GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
             CP+  I++                GP    G++   ++ +D   C  CG C  ACPVD
Sbjct: 75  KACPSNCISVLCPVPVKEGEADTGKLGPAPQKGSKTPAKFIVDFSLCSLCGQCARACPVD 134

Query: 117 AIVEGPNFEFATETRQELYYD 137
           ++    +       R+   ++
Sbjct: 135 SLRFCHDAYMVAFDRKAFEFE 155


>gi|284006928|emb|CBA72199.1| hydrogenase-4 component H [Arsenophonus nasoniae]
          Length = 180

 Score = 71.3 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 10/103 (9%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T +YP         FRG+       +  ++CI C  C   CP+ A+T E         +
Sbjct: 14  VTEDYPLTPIKVDKNFRGKP-----QHNPQQCIGCGACVNACPSNALTAEIDL-----PK 63

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134
             + + +++ +CI+CG C+E CP  AI     +E A   +++L
Sbjct: 64  GQLFWQLNLGRCIFCGRCEEVCPTAAIRLSQEYELAVWRKEDL 106


>gi|161502107|ref|YP_001569219.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. arizonae serovar 62:z4,z23:-- str.
           RSK2980]
 gi|160863454|gb|ABX20077.1| hypothetical protein SARI_00124 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 180

 Score = 71.3 bits (173), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 10/129 (7%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T +YP E  +    FRG+       +  ++CI C  C   CP+ A+T+E+    ++   
Sbjct: 14  ATSSYPLEPIAVDKNFRGKPE-----HNPQQCIGCAACVNACPSNALTVETDLATNE--- 65

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
             + +  ++ +CI+CG C+E CP  AI     +E A   +++        L N       
Sbjct: 66  --LAWQFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRP 123

Query: 152 IVRNIVTDS 160
                  D 
Sbjct: 124 FAVQKEIDY 132


>gi|82778087|ref|YP_404436.1| formate hydrogenlyase complex iron-sulfur subunit [Shigella
           dysenteriae Sd197]
 gi|309786197|ref|ZP_07680825.1| formate hydrogenlyase subunit 6 [Shigella dysenteriae 1617]
 gi|81242235|gb|ABB62945.1| probable iron-sulfur protein of hydrogenase 3 [Shigella dysenteriae
           Sd197]
 gi|308925942|gb|EFP71421.1| formate hydrogenlyase subunit 6 [Shigella dysenteriae 1617]
          Length = 180

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 10/129 (7%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T +YP E  +    FRG+          ++CI C  C   CP+ A+T+E+     +   
Sbjct: 14  ATSSYPLEPIAVDKNFRGKPE-----QNPQQCIGCAACVNACPSNALTVETDLATGE--- 65

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
             + ++ ++ +CI+CG C+E CP  AI     +E A   +++        L N       
Sbjct: 66  --LVWEFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRP 123

Query: 152 IVRNIVTDS 160
                  D 
Sbjct: 124 FAVQKEIDY 132


>gi|62181351|ref|YP_217768.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|62128984|gb|AAX66687.1| hydrogenase 3, putative quinone oxidoreductase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|322715834|gb|EFZ07405.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Choleraesuis str. A50]
          Length = 180

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 10/129 (7%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T +YP E  +    FRG+       +  ++CI C  C   CP+ A+T+E+    ++   
Sbjct: 14  ATSSYPLEPIAVDKNFRGKPE-----HNPQQCIGCAACVNACPSNALTVETSLATNE--- 65

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
             + +  ++ +CI+CG C+E CP  AI     +E A   +++        L N       
Sbjct: 66  --LAWQFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRP 123

Query: 152 IVRNIVTDS 160
                  D 
Sbjct: 124 FAVQKEIDY 132


>gi|160902350|ref|YP_001567931.1| putative oxidoreductase [Petrotoga mobilis SJ95]
 gi|160359994|gb|ABX31608.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Petrotoga
           mobilis SJ95]
          Length = 612

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 13/108 (12%)

Query: 23  CLRYFFKAKTTINYPFE-----KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA 77
             +Y  K   T+  P E         S R+RG H      N  E+CI C  C  ICP  A
Sbjct: 14  AWKYLTKKPVTV--PMENILITPREASDRYRGFHI-----NDWEKCIGCGTCSKICPTDA 66

Query: 78  ITIES-GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           IT+            +  R  ID  +C +CGLC + C   ++     +
Sbjct: 67  ITMIEIEELSDVEGSKPQRPSIDYGRCSFCGLCVDICTTGSLQMTKEY 114



 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 17/42 (40%)

Query: 87  HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
               R    +  D  KCI CG C + CP DAI      E + 
Sbjct: 36  EASDRYRGFHINDWEKCIGCGTCSKICPTDAITMIEIEELSD 77


>gi|193212953|ref|YP_001998906.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Chlorobaculum parvum NCIB 8327]
 gi|193086430|gb|ACF11706.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chlorobaculum
           parvum NCIB 8327]
          Length = 213

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 38/170 (22%), Positives = 59/170 (34%), Gaps = 39/170 (22%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKT--------------------TINYPFEK 40
           M  +  N+             + L++FF A                      T+ YP E 
Sbjct: 1   MSEYFSNIKTSATT-IATGMGITLKHFFNAVKRKGDAGIDDADYFRQVDGLCTLQYPKEA 59

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH------------- 87
             T P   G + L    +    CI C+ C+  CP Q ITIE+                  
Sbjct: 60  IPTPP--HGRYRLYCNIDD---CIGCRQCDRACPVQCITIETIKATSDDLEACGKTSGGQ 114

Query: 88  DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
                   +DID+ KC+ CG+C   CP + +   P  +F+    + + Y 
Sbjct: 115 QKRMWVPVFDIDVAKCMTCGICVSVCPTECLYHTPVADFSEFNVKNMMYH 164


>gi|315231247|ref|YP_004071683.1| Fe-hydrogenase subunit beta [Thermococcus barophilus MP]
 gi|315184275|gb|ADT84460.1| Fe-hydrogenase subunit beta [Thermococcus barophilus MP]
          Length = 190

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 37/145 (25%), Positives = 54/145 (37%), Gaps = 18/145 (12%)

Query: 20  FFLCLRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78
               L   FK   T  +P  E   T   FRG+          ++CI CKLC  +CPA  I
Sbjct: 7   LSTVLSNLFKKPATNMFPKTEPVPTPEGFRGKLV-----YDVDKCIGCKLCVTVCPAGVI 61

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
                           +    + +C++C  C + CPV+A+     F  AT  + +   D 
Sbjct: 62  EFVPE---------IKKVTFWLGRCVFCAQCVDVCPVNALEMSKEFLLATYDKYD---DN 109

Query: 139 ERLLNNGDRWESEIVRNIVTDSPYR 163
            R L N +  E    +       YR
Sbjct: 110 LRWLKNEEIEEMIEAQKSKKVKKYR 134



 Score = 42.0 bits (97), Expect = 0.028,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 10/70 (14%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           ++Y    ++C  C LC   CP  AIT   G            + ID  KC+ CG+C   C
Sbjct: 131 KKYRIIPDKCKGCTLCARNCPQNAITGAPGK----------VHKIDPNKCVGCGICASVC 180

Query: 114 PVDAIVEGPN 123
              AI E   
Sbjct: 181 RFGAIEEYEE 190


>gi|311278312|ref|YP_003940543.1| formate hydrogenlyase complex iron-sulfur subunit [Enterobacter
           cloacae SCF1]
 gi|308747507|gb|ADO47259.1| formate hydrogenlyase complex iron-sulfur subunit [Enterobacter
           cloacae SCF1]
          Length = 180

 Score = 70.9 bits (172), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 10/136 (7%)

Query: 25  RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84
           +       T  YP +       FRG+       +  ++CI C  C   CP+ A+T+E+  
Sbjct: 7   KALKTGTATAAYPLQPIEVDKNFRGKPE-----HSPQQCIGCAACVNACPSNALTVETDL 61

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNN 144
             +      + +  ++ +CI+CG C+E CP  AI     +E A   +++        L +
Sbjct: 62  AGNA-----LAWQFNLGRCIFCGRCEEVCPTAAIRLSQEYELAVWKKEDFLQQSRFALCS 116

Query: 145 GDRWESEIVRNIVTDS 160
               +         D 
Sbjct: 117 CRVCQRPFAVQKEIDY 132


>gi|218701212|ref|YP_002408841.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           IAI39]
 gi|218371198|emb|CAR19029.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           IAI39]
          Length = 180

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 10/129 (7%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T +YP E  +    FRG+          ++CI C  C   CP+ A+T+E+     +   
Sbjct: 14  ATSSYPLEPIAVDKNFRGKPE-----QNPQQCIGCAACVNACPSNALTVETDLATGE--- 65

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
             + ++ ++ +CI+CG C+E CP  AI     +E A   +++       +L N       
Sbjct: 66  --LAWEFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFVLCNCRVCNRP 123

Query: 152 IVRNIVTDS 160
                  D 
Sbjct: 124 FAVQKEIDY 132


>gi|215488036|ref|YP_002330467.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           O127:H6 str. E2348/69]
 gi|215266108|emb|CAS10533.1| formate hydrogenlyase complex iron-sulfur protein HycF [Escherichia
           coli O127:H6 str. E2348/69]
          Length = 180

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 10/129 (7%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T +YP E  +    FRG+          ++CI C  C   CP+ A+T+E+     +   
Sbjct: 14  ATSSYPLEPIAVDKNFRGKPE-----QNPQQCIGCAACVNACPSNALTVETDLATGE--- 65

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
             + +  ++ +CI+CG C+E CP  AI     +E A   +++        L N       
Sbjct: 66  --LAWQFNLGRCIFCGRCEEVCPTVAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRP 123

Query: 152 IVRNIVTDS 160
                  D 
Sbjct: 124 FAVQKEIDY 132


>gi|110642843|ref|YP_670573.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           536]
 gi|191171357|ref|ZP_03032906.1| formate hydrogenlyase, subunit F [Escherichia coli F11]
 gi|300941096|ref|ZP_07155608.1| hydrogenase 4 subunit H [Escherichia coli MS 21-1]
 gi|300975044|ref|ZP_07172845.1| hydrogenase 4 subunit H [Escherichia coli MS 200-1]
 gi|312965022|ref|ZP_07779262.1| formate hydrogenlyase subunit 6 [Escherichia coli 2362-75]
 gi|331648438|ref|ZP_08349526.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli M605]
 gi|110344435|gb|ABG70672.1| formate hydrogenase-3 component F [Escherichia coli 536]
 gi|190908291|gb|EDV67881.1| formate hydrogenlyase, subunit F [Escherichia coli F11]
 gi|281179723|dbj|BAI56053.1| formate hydrogenlyase subunit [Escherichia coli SE15]
 gi|300308812|gb|EFJ63332.1| hydrogenase 4 subunit H [Escherichia coli MS 200-1]
 gi|300454139|gb|EFK17632.1| hydrogenase 4 subunit H [Escherichia coli MS 21-1]
 gi|312290578|gb|EFR18458.1| formate hydrogenlyase subunit 6 [Escherichia coli 2362-75]
 gi|324005682|gb|EGB74901.1| hydrogenase 4 subunit H [Escherichia coli MS 57-2]
 gi|324013675|gb|EGB82894.1| hydrogenase 4 subunit H [Escherichia coli MS 60-1]
 gi|331042185|gb|EGI14327.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli M605]
          Length = 180

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 10/129 (7%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T +YP E  +    FRG+          ++CI C  C   CP+ A+T+E+     +   
Sbjct: 14  ATSSYPLEPIAVDKNFRGKPE-----QNPQQCIGCAACVNACPSNALTVETDLATGE--- 65

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
             + +  ++ +CI+CG C+E CP  AI     +E A   +++        L N       
Sbjct: 66  --LAWQFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRP 123

Query: 152 IVRNIVTDS 160
                  D 
Sbjct: 124 FAVQKEIDY 132


>gi|170682605|ref|YP_001744869.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           SMS-3-5]
 gi|170520323|gb|ACB18501.1| formate hydrogenlyase, subunit F [Escherichia coli SMS-3-5]
          Length = 180

 Score = 70.9 bits (172), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 10/129 (7%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T +YP E  +    FRG+          ++CI C  C   CP+ A+T+E+     +   
Sbjct: 14  ATSSYPLEPIAVDKNFRGKPE-----QNPQQCIGCSACVNACPSNALTVETDLATGE--- 65

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
             + ++ ++ +CI+CG C+E CP  AI     +E A   +++        L N       
Sbjct: 66  --LAWEFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRP 123

Query: 152 IVRNIVTDS 160
                  D 
Sbjct: 124 FAVQKEIDY 132


>gi|323966867|gb|EGB62296.1| 4Fe-4S binding domain-containing protein [Escherichia coli M863]
 gi|327251443|gb|EGE63129.1| formate hydrogenlyase subunit 6 [Escherichia coli STEC_7v]
          Length = 180

 Score = 70.5 bits (171), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 10/129 (7%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T +YP E  +    FRG+          ++CI C  C   CP+ A+T+E+     +   
Sbjct: 14  ATSSYPLEPIAVDKNFRGKPE-----QNPQQCIGCAACVNACPSNALTVETDLATGE--- 65

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
             + +  ++ +CI+CG C+E CP  AI     +E A   +++        L N       
Sbjct: 66  --LAWQFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRP 123

Query: 152 IVRNIVTDS 160
                  D 
Sbjct: 124 FAVQKEIDY 132


>gi|296134447|ref|YP_003641694.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola
           sp. JR]
 gi|296033025|gb|ADG83793.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola
           potens JR]
          Length = 174

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 10/121 (8%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                 + LR   +  +T  YPF K S     RG+            C+AC++CE +C  
Sbjct: 1   MFSFIKIVLRNLIRGPSTEPYPFGKASAPKGLRGKVKF-----DAHNCVACRMCEHVCAG 55

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            AI     P      +  +++ +    C +CGLC+  CP  AI    ++  A   + +  
Sbjct: 56  GAIQFSEVPD-----KSGLKFTLWHNTCAFCGLCEYYCPTKAIHLTGDYHTAHLQKDKYG 110

Query: 136 Y 136
           Y
Sbjct: 111 Y 111


>gi|283852205|ref|ZP_06369478.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. FW1012B]
 gi|283572431|gb|EFC20418.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. FW1012B]
          Length = 175

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 35/143 (24%), Positives = 50/143 (34%), Gaps = 18/143 (12%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALR--RYPNGEERCIACKLCE 70
           LK  V    +  R   +   T+ YP E+      FRG   L          RC+AC  C 
Sbjct: 14  LKSLVIGLGVTGRAICQPGITVIYPREEVDNLASFRGHVELIGKDDAPDVPRCVACGACV 73

Query: 71  AICPAQAITI----------------ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
             CP+  +T+                + GP    G +      +D   C  CG C + CP
Sbjct: 74  KACPSNCLTVLCPVPAKEGDEAGAEAKMGPAPQKGCKSPAVVIVDFSLCSLCGQCAKTCP 133

Query: 115 VDAIVEGPNFEFATETRQELYYD 137
           VD++    N       R+    D
Sbjct: 134 VDSLKFSDNPYMVAFDRKAFKID 156


>gi|206580434|ref|YP_002236934.1| formate hydrogenlyase, subunit F [Klebsiella pneumoniae 342]
 gi|206569492|gb|ACI11268.1| formate hydrogenlyase, subunit F [Klebsiella pneumoniae 342]
          Length = 180

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 10/129 (7%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T +YP +       FRG+          ++CI C  C   CP+ A+T+E+    +    
Sbjct: 14  ATHSYPLDPMPVDKNFRGKPEHT-----PQQCIGCAACVNACPSNALTVETDLTTNQ--- 65

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
             + +  ++ +CI+CG C+E CP  AI   P +E A   +++        + +    +  
Sbjct: 66  --LAWQFNLGRCIFCGRCEEVCPTAAIKLSPEYELAVWKKEDFLQQSRFAICHCRECQRP 123

Query: 152 IVRNIVTDS 160
                  D 
Sbjct: 124 FAVQKEIDY 132


>gi|333002277|gb|EGK21841.1| hydrogenase-4 component H [Shigella flexneri K-272]
 gi|333016098|gb|EGK35430.1| hydrogenase-4 component H [Shigella flexneri K-227]
          Length = 181

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 48/138 (34%), Gaps = 13/138 (9%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +      +R       T+ YPF     SP FRG+  L                     A
Sbjct: 1   MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG----------ACA 47

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A    +     D  + +  + + + +CIYCG C+E CP  AI    NFE +   + +LY
Sbjct: 48  CACPANALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELSVTHKADLY 107

Query: 136 YDKERLLNNGDRWESEIV 153
                 L    R E    
Sbjct: 108 THATFHLQRCSRCERPFA 125


>gi|26249119|ref|NP_755159.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           CFT073]
 gi|91212080|ref|YP_542066.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           UTI89]
 gi|117624952|ref|YP_853940.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           APEC O1]
 gi|170765966|ref|ZP_02900777.1| formate hydrogenlyase, subunit F [Escherichia albertii TW07627]
 gi|218690844|ref|YP_002399056.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           ED1a]
 gi|227888258|ref|ZP_04006063.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           83972]
 gi|237706657|ref|ZP_04537138.1| formate hydrogenlyase subunit 6 [Escherichia sp. 3_2_53FAA]
 gi|300976820|ref|ZP_07173637.1| hydrogenase 4 subunit H [Escherichia coli MS 45-1]
 gi|301049523|ref|ZP_07196481.1| hydrogenase 4 subunit H [Escherichia coli MS 185-1]
 gi|306812402|ref|ZP_07446600.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           NC101]
 gi|331658828|ref|ZP_08359770.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli TA206]
 gi|26109526|gb|AAN81729.1|AE016765_131 Formate hydrogenlyase subunit 6 [Escherichia coli CFT073]
 gi|91073654|gb|ABE08535.1| formate hydrogenlyase subunit 6 [Escherichia coli UTI89]
 gi|115514076|gb|ABJ02151.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           APEC O1]
 gi|170125112|gb|EDS94043.1| formate hydrogenlyase, subunit F [Escherichia albertii TW07627]
 gi|218428408|emb|CAR09333.2| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           ED1a]
 gi|226899697|gb|EEH85956.1| formate hydrogenlyase subunit 6 [Escherichia sp. 3_2_53FAA]
 gi|227834527|gb|EEJ44993.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           83972]
 gi|294491620|gb|ADE90376.1| formate hydrogenlyase, subunit F [Escherichia coli IHE3034]
 gi|300298754|gb|EFJ55139.1| hydrogenase 4 subunit H [Escherichia coli MS 185-1]
 gi|300410006|gb|EFJ93544.1| hydrogenase 4 subunit H [Escherichia coli MS 45-1]
 gi|305854440|gb|EFM54878.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           NC101]
 gi|307554695|gb|ADN47470.1| formate hydrogenlyase subunit 6 [Escherichia coli ABU 83972]
 gi|307625709|gb|ADN70013.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           UM146]
 gi|315289283|gb|EFU48678.1| hydrogenase 4 subunit H [Escherichia coli MS 110-3]
 gi|315293723|gb|EFU53075.1| hydrogenase 4 subunit H [Escherichia coli MS 153-1]
 gi|320194858|gb|EFW69487.1| Formate hydrogenlyase complex 3 iron-sulfur protein [Escherichia
           coli WV_060327]
 gi|323188866|gb|EFZ74151.1| formate hydrogenlyase subunit 6 [Escherichia coli RN587/1]
 gi|323951061|gb|EGB46937.1| 4Fe-4S binding domain-containing protein [Escherichia coli H252]
 gi|323957068|gb|EGB52793.1| 4Fe-4S binding domain-containing protein [Escherichia coli H263]
 gi|331053410|gb|EGI25439.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli TA206]
          Length = 180

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 52/129 (40%), Gaps = 10/129 (7%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T +YP E  +    FRG+          ++CI C  C   CP+ A+T+E+     +   
Sbjct: 14  ATSSYPLEPIAVDKNFRGKPE-----QNPQQCIGCAACVNACPSNALTVETDLATGE--- 65

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
             + +  D+ +CI+CG C+E CP  AI     +E A   +++        L N       
Sbjct: 66  --LAWQFDLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRP 123

Query: 152 IVRNIVTDS 160
                  D 
Sbjct: 124 FAVQKEIDY 132


>gi|293412078|ref|ZP_06654801.1| 4Fe-4S ferredoxin [Escherichia coli B354]
 gi|291468849|gb|EFF11340.1| 4Fe-4S ferredoxin [Escherichia coli B354]
          Length = 180

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 10/129 (7%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T +YP E  +    FRG+          ++CI C  C   CP+ A+T+E+     +   
Sbjct: 14  ATSSYPLEPIAVDKNFRGKPE-----QNPQQCIGCAACVNACPSNALTVETDIATGE--- 65

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
             + ++ ++ +CI+CG C+E CP  AI     +E A   +++        L N       
Sbjct: 66  --LAWEFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRP 123

Query: 152 IVRNIVTDS 160
                  D 
Sbjct: 124 FAVQKEIDY 132


>gi|218706214|ref|YP_002413733.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           UMN026]
 gi|293406212|ref|ZP_06650138.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           FVEC1412]
 gi|298381949|ref|ZP_06991546.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           FVEC1302]
 gi|300899959|ref|ZP_07118162.1| hydrogenase 4 subunit H [Escherichia coli MS 198-1]
 gi|331664274|ref|ZP_08365180.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli TA143]
 gi|218433311|emb|CAR14211.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           UMN026]
 gi|284922656|emb|CBG35744.1| formate hydrogenlyase subunit 6 [Escherichia coli 042]
 gi|291426218|gb|EFE99250.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           FVEC1412]
 gi|298277089|gb|EFI18605.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           FVEC1302]
 gi|300356468|gb|EFJ72338.1| hydrogenase 4 subunit H [Escherichia coli MS 198-1]
 gi|331058205|gb|EGI30186.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli TA143]
          Length = 180

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 10/129 (7%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T +YP E  +    FRG+          ++CI C  C   CP+ A+T+E+     +   
Sbjct: 14  ATSSYPLEPIAVDKNFRGKPE-----QNPQQCIGCAACVNACPSNALTVETDLATGE--- 65

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
             + ++ ++ +CI+CG C+E CP  AI     +E A   +++        L N       
Sbjct: 66  --LAWEFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRICNRP 123

Query: 152 IVRNIVTDS 160
                  D 
Sbjct: 124 FAVQKEIDY 132


>gi|333001063|gb|EGK20633.1| formate hydrogenlyase subunit 6 [Shigella flexneri K-272]
 gi|333015432|gb|EGK34771.1| formate hydrogenlyase subunit 6 [Shigella flexneri K-227]
          Length = 180

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 10/129 (7%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T +YP E  +    FRG+          ++CI C  C   CP+ A+T+E+     +   
Sbjct: 14  ATSSYPLEPIAVDKNFRGKPE-----QNPQQCIGCAACVNACPSNALTVETDLPTGE--- 65

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
             + ++ ++ +CI+CG C+E CP  AI     FE A   +++        L N       
Sbjct: 66  --LAWEFNLGRCIFCGRCEEVCPTAAIKLSQEFELAVWKKEDFLQQSRFALCNCRVCNRP 123

Query: 152 IVRNIVTDS 160
                  D 
Sbjct: 124 FAVQKEIDY 132


>gi|194445625|ref|YP_002042090.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194404288|gb|ACF64510.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 180

 Score = 70.5 bits (171), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 10/129 (7%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T +YP E  +    FRG+       +  ++CI C  C   CP+ A+T+E+    ++   
Sbjct: 14  ATSSYPLEPIAVDKNFRGKPE-----HNPQQCIGCAACVNACPSNALTVETLLATNE--- 65

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
             + +  ++ +CI+CG C+E CP  AI     +E A   +++        L N    +  
Sbjct: 66  --LAWQFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCKRP 123

Query: 152 IVRNIVTDS 160
                  D 
Sbjct: 124 FAVQKEIDY 132


>gi|300820848|ref|ZP_07100998.1| hydrogenase 4 subunit H [Escherichia coli MS 119-7]
 gi|300903498|ref|ZP_07121423.1| hydrogenase 4 subunit H [Escherichia coli MS 84-1]
 gi|301302840|ref|ZP_07208968.1| hydrogenase 4 subunit H [Escherichia coli MS 124-1]
 gi|331669228|ref|ZP_08370076.1| hydrogenase-4 component H [Escherichia coli TA271]
 gi|331678473|ref|ZP_08379148.1| hydrogenase-4 component H [Escherichia coli H591]
 gi|300404530|gb|EFJ88068.1| hydrogenase 4 subunit H [Escherichia coli MS 84-1]
 gi|300526601|gb|EFK47670.1| hydrogenase 4 subunit H [Escherichia coli MS 119-7]
 gi|300841775|gb|EFK69535.1| hydrogenase 4 subunit H [Escherichia coli MS 124-1]
 gi|315256504|gb|EFU36472.1| hydrogenase 4 subunit H [Escherichia coli MS 85-1]
 gi|331064422|gb|EGI36333.1| hydrogenase-4 component H [Escherichia coli TA271]
 gi|331074933|gb|EGI46253.1| hydrogenase-4 component H [Escherichia coli H591]
          Length = 181

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 48/141 (34%), Gaps = 13/141 (9%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +      +R       T+ YPF     SP FRG+  L                     A
Sbjct: 1   MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG----------ACA 47

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A    +     D  + +  + + + +CIYCG C+E CP  AI    NFE     + +LY
Sbjct: 48  CACPANALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 107

Query: 136 YDKERLLNNGDRWESEIVRNI 156
                 L    R E    +  
Sbjct: 108 TRATFHLQRCSRCERPFAQQK 128


>gi|14521671|ref|NP_127147.1| hydrogenase-4 component b [Pyrococcus abyssi GE5]
 gi|5458890|emb|CAB50377.1| Formate hydrogen lyase subunit 6 (hydrogenase 3 component F)
           [Pyrococcus abyssi GE5]
          Length = 185

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 33/122 (27%), Positives = 49/122 (40%), Gaps = 10/122 (8%)

Query: 31  KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT 90
             T +YPF +    P +RG   +       E CI C  C   CP  A+ +E         
Sbjct: 25  PVTTDYPFVEVEKPPEYRGVPHI-----DPELCIGCGACVNACPPDALIMEWDKENGV-- 77

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWES 150
               R   +  +CI C  C E CP  A+     FE AT ++++L    E  L   +R  +
Sbjct: 78  ---KRLTFNAARCIRCYRCVEVCPTGAMQGTLRFEVATPSKEDLVEVVEHRLAKCERCGN 134

Query: 151 EI 152
            +
Sbjct: 135 YL 136


>gi|298246751|ref|ZP_06970556.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Ktedonobacter racemifer DSM 44963]
 gi|297549410|gb|EFH83276.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Ktedonobacter racemifer DSM 44963]
          Length = 801

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 10/90 (11%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +  C++C  C  +CP  ++ +          R   RY   + +CI+CG C E CP  A+
Sbjct: 689 HDTDCVSCGACVQVCPTGSLMMAE--------RHLTRYAFALDRCIFCGDCVEVCPHGAL 740

Query: 119 VEGPNFEFATETR--QELYYDKERLLNNGD 146
            E PNFE +   R  +++  +K+ L    D
Sbjct: 741 GETPNFELSFFNRFGEDVTLEKQDLAQAPD 770


>gi|118581922|ref|YP_903172.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pelobacter propionicus DSM 2379]
 gi|118504632|gb|ABL01115.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pelobacter
           propionicus DSM 2379]
          Length = 128

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 44/129 (34%), Positives = 56/129 (43%), Gaps = 18/129 (13%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            LR+      T NYP EK      FRG    +      E+CI CK C   CPA+AI I  
Sbjct: 11  VLRHSVMKPATCNYPAEKQKMPEHFRGRIRYK-----AEKCIGCKFCVRDCPARAIEIFK 65

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLL 142
                   +        + +CIYCG C ++CP DA+   P+FE A         DKE+L 
Sbjct: 66  VADKVFEAKFY------LDRCIYCGQCVDSCPKDALELTPDFELAQ-------IDKEKLR 112

Query: 143 NNGDRWESE 151
               R E E
Sbjct: 113 VVCRREEGE 121


>gi|118579036|ref|YP_900286.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pelobacter propionicus DSM 2379]
 gi|118501746|gb|ABK98228.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pelobacter
           propionicus DSM 2379]
          Length = 129

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 40/124 (32%), Positives = 54/124 (43%), Gaps = 11/124 (8%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            LR+   A  T NYPFEK      FRG+          E+CI CK+C   CPA+AITI  
Sbjct: 12  VLRHSIMAPATRNYPFEKLEMPDNFRGKIVF-----DYEKCIGCKICVRDCPARAITITR 66

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLL 142
                    +    +  + +CIYC  C ++CP  A+     FE A   R +         
Sbjct: 67  VAD------KVFEAEFYLDRCIYCAQCVDSCPKGALDNTREFELAQIDRTQHRIHFHAKT 120

Query: 143 NNGD 146
           + GD
Sbjct: 121 DVGD 124


>gi|209761898|gb|ACI79261.1| formate hydrogenlyase subunit-7 component F [Escherichia coli]
 gi|320645910|gb|EFX14891.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           O157:H- str. 493-89]
 gi|320651210|gb|EFX19645.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           O157:H- str. H 2687]
          Length = 180

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 10/129 (7%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T +YP E  +    FRG+          ++CI C  C   CP+ A+T+E+     +   
Sbjct: 14  ATSSYPLEPIAVDKNFRGKPE-----QNPQQCIGCAACVNACPSNALTVETDLATGE--- 65

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
             + ++ ++ +CI+CG C+E CP  AI     +E A   +++        L N       
Sbjct: 66  --LAWEFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRP 123

Query: 152 IVRNIVTDS 160
                  D 
Sbjct: 124 FAVQKEIDY 132


>gi|168242578|ref|ZP_02667510.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194448985|ref|YP_002046809.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|197251323|ref|YP_002147746.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197261856|ref|ZP_03161930.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|204928218|ref|ZP_03219418.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|224584625|ref|YP_002638423.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|238909615|ref|ZP_04653452.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
 gi|194407289|gb|ACF67508.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|197215026|gb|ACH52423.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197240111|gb|EDY22731.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|204322540|gb|EDZ07737.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205338217|gb|EDZ24981.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|224469152|gb|ACN46982.1| hydrogenase 4 Fe-S subunit [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 180

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 10/129 (7%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T +YP E  +    FRG+       +  ++CI C  C   CP+ A+T+E+    ++   
Sbjct: 14  ATSSYPLEPIAVDKNFRGKPE-----HNPQQCIGCAACVNACPSNALTVETLLATNE--- 65

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
             + +  ++ +CI+CG C+E CP  AI     +E A   +++        L N       
Sbjct: 66  --LAWQFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRP 123

Query: 152 IVRNIVTDS 160
                  D 
Sbjct: 124 FAVQKEIDY 132


>gi|15803237|ref|NP_289269.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           O157:H7 EDL933]
 gi|15832830|ref|NP_311603.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           O157:H7 str. Sakai]
 gi|74313287|ref|YP_311706.1| formate hydrogenlyase complex iron-sulfur subunit [Shigella sonnei
           Ss046]
 gi|82545205|ref|YP_409152.1| formate hydrogenlyase complex iron-sulfur subunit [Shigella boydii
           Sb227]
 gi|110806653|ref|YP_690173.1| formate hydrogenlyase complex iron-sulfur subunit [Shigella
           flexneri 5 str. 8401]
 gi|157162166|ref|YP_001459484.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           HS]
 gi|168749955|ref|ZP_02774977.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4113]
 gi|168755465|ref|ZP_02780472.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4401]
 gi|168762881|ref|ZP_02787888.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4501]
 gi|168768811|ref|ZP_02793818.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4486]
 gi|168774748|ref|ZP_02799755.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4196]
 gi|168778702|ref|ZP_02803709.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4076]
 gi|168787975|ref|ZP_02812982.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC869]
 gi|168800199|ref|ZP_02825206.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC508]
 gi|170019034|ref|YP_001723988.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           ATCC 8739]
 gi|188492377|ref|ZP_02999647.1| iron-sulfur binding domain protein [Escherichia coli 53638]
 gi|191166826|ref|ZP_03028652.1| formate hydrogenlyase, subunit F [Escherichia coli B7A]
 gi|193065016|ref|ZP_03046091.1| formate hydrogenlyase, subunit F [Escherichia coli E22]
 gi|194427901|ref|ZP_03060447.1| formate hydrogenlyase, subunit F [Escherichia coli B171]
 gi|194438985|ref|ZP_03071069.1| formate hydrogenlyase, subunit F [Escherichia coli 101-1]
 gi|195938470|ref|ZP_03083852.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           O157:H7 str. EC4024]
 gi|208805909|ref|ZP_03248246.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4206]
 gi|208813713|ref|ZP_03255042.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4045]
 gi|208818938|ref|ZP_03259258.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4042]
 gi|209396172|ref|YP_002272183.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4115]
 gi|217327035|ref|ZP_03443118.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           TW14588]
 gi|218547772|ref|YP_002381563.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia
           fergusonii ATCC 35469]
 gi|253772425|ref|YP_003035256.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254037759|ref|ZP_04871817.1| formate hydrogenlyase [Escherichia sp. 1_1_43]
 gi|254162651|ref|YP_003045759.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           B str. REL606]
 gi|254794660|ref|YP_003079497.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           O157:H7 str. TW14359]
 gi|260845363|ref|YP_003223141.1| formate hydrogenlyase complex iron-sulfur protein HycF [Escherichia
           coli O103:H2 str. 12009]
 gi|261226014|ref|ZP_05940295.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261256728|ref|ZP_05949261.1| formate hydrogenlyase complex iron-sulfur protein HycF [Escherichia
           coli O157:H7 str. FRIK966]
 gi|291284047|ref|YP_003500865.1| Formate hydrogenlyase, subunit F [Escherichia coli O55:H7 str.
           CB9615]
 gi|293415970|ref|ZP_06658610.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           B185]
 gi|300930578|ref|ZP_07145970.1| hydrogenase 4 subunit H [Escherichia coli MS 187-1]
 gi|301027130|ref|ZP_07190499.1| hydrogenase 4 subunit H [Escherichia coli MS 69-1]
 gi|307312857|ref|ZP_07592487.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli W]
 gi|309795180|ref|ZP_07689599.1| hydrogenase 4 subunit H [Escherichia coli MS 145-7]
 gi|312973070|ref|ZP_07787243.1| formate hydrogenlyase subunit 6 [Escherichia coli 1827-70]
 gi|331654197|ref|ZP_08355197.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli M718]
 gi|331674228|ref|ZP_08374988.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli TA280]
 gi|331684333|ref|ZP_08384925.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli H299]
 gi|12517168|gb|AAG57827.1|AE005500_6 probable iron-sulfur protein of hydrogenase 3 (part of FHL complex)
           [Escherichia coli O157:H7 str. EDL933]
 gi|13363047|dbj|BAB36999.1| formate hydrogenlyase subunit-7 component F [Escherichia coli
           O157:H7 str. Sakai]
 gi|73856764|gb|AAZ89471.1| probable iron-sulfur protein of hydrogenase 3 [Shigella sonnei
           Ss046]
 gi|81246616|gb|ABB67324.1| probable iron-sulfur protein of hydrogenase 3 [Shigella boydii
           Sb227]
 gi|110616201|gb|ABF04868.1| probable iron-sulfur protein of hydrogenase 3 (part of FHL complex)
           [Shigella flexneri 5 str. 8401]
 gi|157067846|gb|ABV07101.1| formate hydrogenlyase, subunit F [Escherichia coli HS]
 gi|169753962|gb|ACA76661.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli ATCC 8739]
 gi|187769586|gb|EDU33430.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4196]
 gi|188015821|gb|EDU53943.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4113]
 gi|188487576|gb|EDU62679.1| iron-sulfur binding domain protein [Escherichia coli 53638]
 gi|189003527|gb|EDU72513.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4076]
 gi|189357266|gb|EDU75685.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362055|gb|EDU80474.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4486]
 gi|189366888|gb|EDU85304.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4501]
 gi|189372135|gb|EDU90551.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC869]
 gi|189377500|gb|EDU95916.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC508]
 gi|190903197|gb|EDV62920.1| formate hydrogenlyase, subunit F [Escherichia coli B7A]
 gi|192927313|gb|EDV81932.1| formate hydrogenlyase, subunit F [Escherichia coli E22]
 gi|194414134|gb|EDX30410.1| formate hydrogenlyase, subunit F [Escherichia coli B171]
 gi|194422106|gb|EDX38109.1| formate hydrogenlyase, subunit F [Escherichia coli 101-1]
 gi|208725710|gb|EDZ75311.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4206]
 gi|208734990|gb|EDZ83677.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4045]
 gi|208739061|gb|EDZ86743.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4042]
 gi|209157572|gb|ACI35005.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           EC4115]
 gi|209761900|gb|ACI79262.1| formate hydrogenlyase subunit-7 component F [Escherichia coli]
 gi|209761902|gb|ACI79263.1| formate hydrogenlyase subunit-7 component F [Escherichia coli]
 gi|209761904|gb|ACI79264.1| formate hydrogenlyase subunit-7 component F [Escherichia coli]
 gi|209761906|gb|ACI79265.1| formate hydrogenlyase subunit-7 component F [Escherichia coli]
 gi|217319402|gb|EEC27827.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str.
           TW14588]
 gi|218355313|emb|CAQ87920.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia
           fergusonii ATCC 35469]
 gi|222034414|emb|CAP77156.1| Formate hydrogenlyase subunit 6 [Escherichia coli LF82]
 gi|226839383|gb|EEH71404.1| formate hydrogenlyase [Escherichia sp. 1_1_43]
 gi|242378277|emb|CAQ33052.1| formate hydrogenlyase complex iron-sulfur protein, subunit of
           hydrogenase 3 and formate hydrogenlyase complex
           [Escherichia coli BL21(DE3)]
 gi|253323469|gb|ACT28071.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|253974552|gb|ACT40223.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           B str. REL606]
 gi|253978719|gb|ACT44389.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           BL21(DE3)]
 gi|254594060|gb|ACT73421.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           O157:H7 str. TW14359]
 gi|257760510|dbj|BAI32007.1| formate hydrogenlyase complex iron-sulfur protein HycF [Escherichia
           coli O103:H2 str. 12009]
 gi|290763920|gb|ADD57881.1| Formate hydrogenlyase, subunit F [Escherichia coli O55:H7 str.
           CB9615]
 gi|291432159|gb|EFF05141.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           B185]
 gi|300395162|gb|EFJ78700.1| hydrogenase 4 subunit H [Escherichia coli MS 69-1]
 gi|300461520|gb|EFK25013.1| hydrogenase 4 subunit H [Escherichia coli MS 187-1]
 gi|306907292|gb|EFN37798.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli W]
 gi|308121151|gb|EFO58413.1| hydrogenase 4 subunit H [Escherichia coli MS 145-7]
 gi|309703079|emb|CBJ02411.1| formate hydrogenlyase subunit 6 [Escherichia coli ETEC H10407]
 gi|310333012|gb|EFQ00226.1| formate hydrogenlyase subunit 6 [Escherichia coli 1827-70]
 gi|312947249|gb|ADR28076.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|315061996|gb|ADT76323.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           W]
 gi|315298792|gb|EFU58046.1| hydrogenase 4 subunit H [Escherichia coli MS 16-3]
 gi|320173427|gb|EFW48626.1| Formate hydrogenlyase complex 3 iron-sulfur protein [Shigella
           dysenteriae CDC 74-1112]
 gi|320186506|gb|EFW61234.1| Formate hydrogenlyase complex 3 iron-sulfur protein [Shigella
           flexneri CDC 796-83]
 gi|320189052|gb|EFW63711.1| Formate hydrogenlyase complex 3 iron-sulfur protein [Escherichia
           coli O157:H7 str. EC1212]
 gi|320640363|gb|EFX09902.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           O157:H7 str. G5101]
 gi|320656760|gb|EFX24648.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320662303|gb|EFX29700.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320667354|gb|EFX34312.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323159852|gb|EFZ45823.1| formate hydrogenlyase subunit 6 [Escherichia coli E128010]
 gi|323167105|gb|EFZ52823.1| formate hydrogenlyase subunit 6 [Shigella sonnei 53G]
 gi|323172992|gb|EFZ58623.1| formate hydrogenlyase subunit 6 [Escherichia coli LT-68]
 gi|323377421|gb|ADX49689.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           KO11]
 gi|323935724|gb|EGB32038.1| 4Fe-4S binding domain-containing protein [Escherichia coli E1520]
 gi|323941449|gb|EGB37632.1| 4Fe-4S binding domain-containing protein [Escherichia coli E482]
 gi|323960620|gb|EGB56246.1| 4Fe-4S binding domain-containing protein [Escherichia coli H489]
 gi|323971551|gb|EGB66784.1| 4Fe-4S binding domain-containing protein [Escherichia coli TA007]
 gi|324111345|gb|EGC05327.1| 4Fe-4S binding domain-containing protein [Escherichia fergusonii
           B253]
 gi|325496239|gb|EGC94098.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia
           fergusonii ECD227]
 gi|326339208|gb|EGD63023.1| Formate hydrogenlyase complex 3 iron-sulfur protein [Escherichia
           coli O157:H7 str. 1044]
 gi|326342909|gb|EGD66677.1| Formate hydrogenlyase complex 3 iron-sulfur protein [Escherichia
           coli O157:H7 str. 1125]
 gi|331047579|gb|EGI19656.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli M718]
 gi|331068322|gb|EGI39717.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli TA280]
 gi|331077948|gb|EGI49154.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli H299]
 gi|332091881|gb|EGI96959.1| formate hydrogenlyase subunit 6 [Shigella boydii 3594-74]
 gi|332344601|gb|AEE57935.1| formate hydrogenlyase subunit 6 [Escherichia coli UMNK88]
          Length = 180

 Score = 70.5 bits (171), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 10/129 (7%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T +YP E  +    FRG+          ++CI C  C   CP+ A+T+E+     +   
Sbjct: 14  ATSSYPLEPIAVDKNFRGKPE-----QNPQQCIGCAACVNACPSNALTVETDLATGE--- 65

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
             + ++ ++ +CI+CG C+E CP  AI     +E A   +++        L N       
Sbjct: 66  --LAWEFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRP 123

Query: 152 IVRNIVTDS 160
                  D 
Sbjct: 124 FAVQKEIDY 132


>gi|323978670|gb|EGB73752.1| 4Fe-4S binding domain-containing protein [Escherichia coli TW10509]
          Length = 180

 Score = 70.1 bits (170), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 10/129 (7%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T +YP E  +    FRG+          ++CI C  C   CP+ A+T+E+     +   
Sbjct: 14  ATSSYPLEPIAVDKNFRGKPE-----QNPQQCIGCAACVNACPSNALTVETDLATGE--- 65

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
             + ++ ++ +CI+CG C+E CP  AI     +E A   +++        L N       
Sbjct: 66  --LAWEFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRP 123

Query: 152 IVRNIVTDS 160
                  D 
Sbjct: 124 FAVQKEIDY 132


>gi|4761221|gb|AAD29283.1|AF113909_2 NADH dehydrogenase 18kD subunit [Suaeda japonica]
          Length = 114

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 39/79 (49%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++CIAC++C   CP     ++         +R + Y ID   CI+CG C E CP + +
Sbjct: 4   EFDKCIACEVCVRACPIDLPLVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 63

Query: 119 VEGPNFEFATETRQELYYD 137
                +E +T  R EL Y+
Sbjct: 64  SMTEEYELSTYDRHELNYN 82


>gi|332087441|gb|EGI92569.1| formate hydrogenlyase subunit 6 [Shigella boydii 5216-82]
          Length = 180

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 10/129 (7%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T +YP E  +    FRG+          ++CI C  C   CP+ A+T+E+     +   
Sbjct: 14  ATSSYPLEPIAVDKNFRGKPE-----QNPQQCIGCAACVNACPSNALTVETDLATGE--- 65

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
             + ++ ++ +CI+CG C+E CP  AI     +E A   +++        L N       
Sbjct: 66  --LAWEFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRP 123

Query: 152 IVRNIVTDS 160
                  D 
Sbjct: 124 FAVQKEIDY 132


>gi|194432977|ref|ZP_03065260.1| formate hydrogenlyase, subunit F [Shigella dysenteriae 1012]
 gi|194418704|gb|EDX34790.1| formate hydrogenlyase, subunit F [Shigella dysenteriae 1012]
 gi|320180857|gb|EFW55780.1| Formate hydrogenlyase complex 3 iron-sulfur protein [Shigella
           boydii ATCC 9905]
 gi|332088651|gb|EGI93764.1| formate hydrogenlyase subunit 6 [Shigella dysenteriae 155-74]
          Length = 180

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 10/129 (7%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T +YP E  +    FRG+          ++CI C  C   CP+ A+T+E+     +   
Sbjct: 14  ATSSYPLEPIAVDKNFRGKPE-----QNPQQCIGCAACVNACPSNALTVETDLATGE--- 65

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
             + ++ ++ +CI+CG C+E CP  AI     +E A   +++        L N       
Sbjct: 66  --LAWEFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRP 123

Query: 152 IVRNIVTDS 160
                  D 
Sbjct: 124 FAVQKEIDY 132


>gi|283852264|ref|ZP_06369536.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. FW1012B]
 gi|283572346|gb|EFC20334.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. FW1012B]
          Length = 193

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 34/152 (22%), Positives = 49/152 (32%), Gaps = 30/152 (19%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE--ERCIACKLCE 70
           LK  +    +  R   +   T+ YP  +      +RG   L          RCIAC  C 
Sbjct: 14  LKSLLVGLGITGRAMARPSVTVLYPKREVGNLDTYRGHVELVGKDGEPAVPRCIACGACV 73

Query: 71  AICPAQAI----------------------------TIESGPRCHDGTRRTVRYDIDMIK 102
             CP+Q +                                GP    G +    +  D   
Sbjct: 74  RACPSQCLAVACPIGGGKPGPEGRSAAELAGELIPEVETMGPAPQKGCKTPGAFVYDYSL 133

Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134
           C  CG C +ACPVD++    +  F    RQ+ 
Sbjct: 134 CSLCGQCVKACPVDSLRFSRHAYFIGTRRQDF 165


>gi|288932071|ref|YP_003436131.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
 gi|288894319|gb|ADC65856.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
          Length = 247

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 12/129 (9%)

Query: 17  VGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
           + A     +   K    TI+YP E+      FRG          +E CI+C  C  ICPA
Sbjct: 20  LRAISEVTKQAIKPGTITISYPHERRKLPDYFRGFILF-----EKEECISCFRCAHICPA 74

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            AI + +               +D  KCI+C  C ++CP  A+      + A +  + + 
Sbjct: 75  NAIQMYADQEGRYYPG------VDYAKCIFCHFCVDSCPTAALKPSKIHDVAFKDVESMM 128

Query: 136 YDKERLLNN 144
              E++   
Sbjct: 129 ITPEQMEQV 137



 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 30/84 (35%), Gaps = 7/84 (8%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E+ +              P   E CI C+LC   CP  AI  +            V  + 
Sbjct: 165 EELTVKFDKPKRPRFVAAPLNAENCIGCRLCMFSCPVDAIKSKVEE-------VKVTLET 217

Query: 99  DMIKCIYCGLCQEACPVDAIVEGP 122
           D  KC  CG+C   CP + +   P
Sbjct: 218 DYEKCTGCGICVRICPTEVLKLTP 241


>gi|242399275|ref|YP_002994699.1| Membrane-bound hydrogenase MBH 1, subunit Mbh1N (hydrogenase
           subunit) [Thermococcus sibiricus MM 739]
 gi|242265668|gb|ACS90350.1| Membrane-bound hydrogenase MBH 1, subunit Mbh1N (hydrogenase
           subunit) [Thermococcus sibiricus MM 739]
          Length = 189

 Score = 70.1 bits (170), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 35/147 (23%), Positives = 54/147 (36%), Gaps = 23/147 (15%)

Query: 20  FFLCLRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78
             + LR  FK+  T  +P  E       FRG+           +CI CKLC  +CPA   
Sbjct: 7   LSVVLRNLFKSPATNAFPKSEPVPIPEGFRGKLVYHVD-----KCIGCKLCMNVCPAGVF 61

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR--QELYY 136
                           +  + + +C++C  C + CPV+A+     F  AT  +    L +
Sbjct: 62  EYVPE---------IKKVTLWLGRCVFCQQCVDVCPVNALEMSGEFLLATYDKYDDNLRW 112

Query: 137 DKERLLNNGDRWESEIVRNIVTDSPYR 163
            K       +  E  I +       YR
Sbjct: 113 LKN------EEIEEMIAQKSGKTKKYR 133



 Score = 41.2 bits (95), Expect = 0.045,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 10/70 (14%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           ++Y    E+C  C LC   CP  AI               V + I+  KCI CG+C   C
Sbjct: 130 KKYRIIAEKCKGCTLCARNCPQNAIEGAP----------RVVHKINPEKCIGCGICATIC 179

Query: 114 PVDAIVEGPN 123
              AI E   
Sbjct: 180 KFSAIEEYEE 189


>gi|303245741|ref|ZP_07332024.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           fructosovorans JJ]
 gi|302493004|gb|EFL52869.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           fructosovorans JJ]
          Length = 189

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 29/153 (18%), Positives = 46/153 (30%), Gaps = 28/153 (18%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALR--RYPNGEERCIACKLCE 70
           +K       +  +   K   T+ YP  +      +RG   L       G  RC+AC  C 
Sbjct: 14  IKSLFVGLGITGQALTKPNVTVLYPMGEVKNLDSYRGHVELVGKEDDPGSPRCVACGACV 73

Query: 71  AICPAQAIT--------------------------IESGPRCHDGTRRTVRYDIDMIKCI 104
             CP+  ++                              P    G +    +  D   C 
Sbjct: 74  RACPSNCLSVACPVGDAGPKGREAEEMVGELIPRIEMMAPAPQKGCKFPGVFTYDYSLCS 133

Query: 105 YCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
            CG C   CPV ++    +  F    R++   D
Sbjct: 134 LCGQCVRICPVASLRFSRHAYFIGTRREDFRLD 166


>gi|213859999|ref|ZP_03385703.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Typhi str. M223]
          Length = 118

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 10/104 (9%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T +YP E  +    FRG+       +  ++CI C  C   CP+ A+T+E+    ++   
Sbjct: 14  ATSSYPLEPIAVDKNFRGKPE-----HNPQQCIGCAACVNACPSNALTVETDLATNE--- 65

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
             + +  ++ +CI+CG C+E CP  AI     +E A   +++  
Sbjct: 66  --LAWQFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFL 107


>gi|283798986|ref|ZP_06348139.1| formate hydrogenlyase subunit 6 [Clostridium sp. M62/1]
 gi|291073254|gb|EFE10618.1| formate hydrogenlyase subunit 6 [Clostridium sp. M62/1]
          Length = 112

 Score = 70.1 bits (170), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 10/104 (9%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T +YP E  +    FRG+       +  ++CI C  C   CP+ A+T+E+    ++   
Sbjct: 10  ATSSYPLEPIAVDKNFRGKPE-----HNPQQCIGCAACVNACPSNALTVETLLATNE--- 61

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
             + +  ++ +CI+CG C+E CP  AI     +E A   +++  
Sbjct: 62  --LAWQFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFL 103


>gi|332157671|ref|YP_004422950.1| NADH-plastoquinone oxidoreductase subunit [Pyrococcus sp. NA2]
 gi|331033134|gb|AEC50946.1| NADH-plastoquinone oxidoreductase subunit [Pyrococcus sp. NA2]
          Length = 136

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/142 (19%), Positives = 49/142 (34%), Gaps = 18/142 (12%)

Query: 20  FFLCLRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78
               ++  FK   T  +P  E   T   FRG+          E+C+ C++C  +CPA   
Sbjct: 7   LPTVIKNLFKRPATNPFPKTEPVPTPEGFRGKIV-----YNVEKCVGCRMCVTVCPAGVF 61

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE---LY 135
                 R         +  +   +C++C  C + CP  A+     F  A+  + +   +Y
Sbjct: 62  IYLPEIR---------KVTLWTGRCVFCKQCVDVCPTGALQMSDEFLLASYDKYDGKFIY 112

Query: 136 YDKERLLNNGDRWESEIVRNIV 157
              E       + E        
Sbjct: 113 LTPEEAEEIKKKQEELKKAKKK 134


>gi|283786730|ref|YP_003366595.1| formate hydrogenlyase subunit 6 [Citrobacter rodentium ICC168]
 gi|282950184|emb|CBG89820.1| formate hydrogenlyase subunit 6 [Citrobacter rodentium ICC168]
          Length = 180

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 55/128 (42%), Gaps = 10/128 (7%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
           T +YP E  +    FRG+       +  ++CI C  C   CP+ A+T+E+    ++    
Sbjct: 15  TSSYPLEPIAVDKNFRGKPE-----HNPQQCIGCAACVNACPSNALTVETDLATNE---- 65

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEI 152
            + +  ++ +CI+CG C+E CP  AI     +E A   +++        L +    +   
Sbjct: 66  -LAWQFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCHCRVCQRPF 124

Query: 153 VRNIVTDS 160
                 D 
Sbjct: 125 AVQKEIDY 132


>gi|16130627|ref|NP_417200.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           str. K-12 substr. MG1655]
 gi|89109507|ref|AP_003287.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           str. K-12 substr. W3110]
 gi|170082296|ref|YP_001731616.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           str. K-12 substr. DH10B]
 gi|238901857|ref|YP_002927653.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           BW2952]
 gi|256024773|ref|ZP_05438638.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia sp.
           4_1_40B]
 gi|300947002|ref|ZP_07161228.1| hydrogenase 4 subunit H [Escherichia coli MS 116-1]
 gi|300954960|ref|ZP_07167372.1| hydrogenase 4 subunit H [Escherichia coli MS 175-1]
 gi|301027397|ref|ZP_07190736.1| hydrogenase 4 subunit H [Escherichia coli MS 196-1]
 gi|301645300|ref|ZP_07245250.1| hydrogenase 4 subunit H [Escherichia coli MS 146-1]
 gi|307139407|ref|ZP_07498763.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           H736]
 gi|331643404|ref|ZP_08344535.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli H736]
 gi|123920|sp|P16432|HYCF_ECOLI RecName: Full=Formate hydrogenlyase subunit 6; Short=FHL subunit 6;
           AltName: Full=Hydrogenase-3 component F
 gi|41685|emb|CAA35551.1| hycF [Escherichia coli]
 gi|882613|gb|AAA69230.1| formate hydrogenlyase subunit 6 [Escherichia coli str. K-12 substr.
           MG1655]
 gi|1789075|gb|AAC75762.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           str. K-12 substr. MG1655]
 gi|85675541|dbj|BAE76797.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           str. K12 substr. W3110]
 gi|169890131|gb|ACB03838.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           str. K-12 substr. DH10B]
 gi|238861136|gb|ACR63134.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           BW2952]
 gi|260448230|gb|ACX38652.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli DH1]
 gi|299879311|gb|EFI87522.1| hydrogenase 4 subunit H [Escherichia coli MS 196-1]
 gi|300318095|gb|EFJ67879.1| hydrogenase 4 subunit H [Escherichia coli MS 175-1]
 gi|300453389|gb|EFK17009.1| hydrogenase 4 subunit H [Escherichia coli MS 116-1]
 gi|301076418|gb|EFK91224.1| hydrogenase 4 subunit H [Escherichia coli MS 146-1]
 gi|315137327|dbj|BAJ44486.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           DH1]
 gi|315615108|gb|EFU95745.1| formate hydrogenlyase subunit 6 [Escherichia coli 3431]
 gi|331036875|gb|EGI09099.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli H736]
 gi|1093499|prf||2104213F hycF gene
          Length = 180

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 10/129 (7%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T +YP E  +    FRG+          ++CI C  C   CP+ A+T+E+     +   
Sbjct: 14  ATSSYPLEPIAVDKNFRGKPE-----QNPQQCIGCAACVNACPSNALTVETDLATGE--- 65

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
             + ++ ++  CI+CG C+E CP  AI     +E A   +++        L N       
Sbjct: 66  --LAWEFNLGHCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRP 123

Query: 152 IVRNIVTDS 160
                  D 
Sbjct: 124 FAVQKEIDY 132


>gi|301429512|dbj|BAJ12135.1| NADH dehydrogenase I chain H [Pseudomonas putida]
          Length = 261

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 3/104 (2%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M+     V   + +  + +  +   + F+ + T+ YP E     PR+RG   L R P+GE
Sbjct: 161 MKYIFDIVHGFYTQ--LRSLVMIFGHAFRKRDTLQYPEEPVYLPPRYRGRIVLTRDPDGE 218

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
           ERC+   +C   CP   I+++      DG      + I+  +CI
Sbjct: 219 ERCVYETVCAVACPVGCISLQKAE-TEDGRWYPDFFRINFSRCI 261


>gi|187731222|ref|YP_001881533.1| formate hydrogenlyase complex iron-sulfur subunit [Shigella boydii
           CDC 3083-94]
 gi|187428214|gb|ACD07488.1| formate hydrogenlyase, subunit F [Shigella boydii CDC 3083-94]
          Length = 180

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 10/129 (7%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T +YP E  +    FRG+          ++CI C  C   CP+ A+T+E+     +   
Sbjct: 14  ATSSYPLEPIAVDKNFRGKPE-----QNPQQCIGCAACVNACPSNALTVETDLATGE--- 65

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
             + ++ ++ +CI+CG C+E CP  AI     +E A   +++        L N       
Sbjct: 66  --LAWEFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNHP 123

Query: 152 IVRNIVTDS 160
                  D 
Sbjct: 124 FAVQKEIDY 132


>gi|254173268|ref|ZP_04879941.1| NAD(P)H-quinone oxidoreductase subunit I (NAD(P)Hdehydrogenase I
           subunit I) [Thermococcus sp. AM4]
 gi|214032677|gb|EEB73506.1| NAD(P)H-quinone oxidoreductase subunit I (NAD(P)Hdehydrogenase I
           subunit I) [Thermococcus sp. AM4]
          Length = 146

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 39/110 (35%), Gaps = 15/110 (13%)

Query: 22  LCLRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80
             LR   +   T  +P  E       FRG+           +C+ C++C  +CPA     
Sbjct: 9   TVLRNLVRKPATNLFPKTEPVPVPENFRGQLKYNVD-----KCVGCRMCVTVCPAGVFVY 63

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
               R         +  +   +C+YC  C + CP  A+     F  A+  
Sbjct: 64  LPDIR---------KVALWTGRCVYCAQCVDVCPTGALQMSDEFLLASYD 104


>gi|298244917|ref|ZP_06968723.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Ktedonobacter racemifer DSM 44963]
 gi|297552398|gb|EFH86263.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Ktedonobacter racemifer DSM 44963]
          Length = 801

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 10/85 (11%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +  C++C  C  +CP  ++ +          R   RY   + +CI+CG C E CP  A+
Sbjct: 689 HDTDCVSCGACVQVCPTGSLMMAE--------RHLTRYAFALDRCIFCGDCVEVCPHGAL 740

Query: 119 VEGPNFEFATETR--QELYYDKERL 141
            E PNFE +   R  +++  +K+ L
Sbjct: 741 GETPNFELSFFNRFGEDVTLEKQDL 765


>gi|206891147|ref|YP_002248826.1| NAD(P)H-quinone oxidoreductase chain I, (NAD(P)H dehydrogenase,
           chain I) [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206743085|gb|ACI22142.1| NAD(P)H-quinone oxidoreductase chain I, (NAD(P)H dehydrogenase,
           chain I) [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 162

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/126 (28%), Positives = 50/126 (39%), Gaps = 15/126 (11%)

Query: 12  FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71
             K  + A  L  R+    K T  YPF   +     RG   +        +CI C  C  
Sbjct: 1   MFKSKIKALLLSSRH---KKITRPYPFVPVTPPENLRGRLEV-----DPNKCIGCGNCVR 52

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
            CP++ ITIE+                   +CIYCG C  ACP  AI     +E AT+ +
Sbjct: 53  TCPSRLITIENYKDE-------RIVMFSSGRCIYCGRCAAACPEKAICITHEYELATDNK 105

Query: 132 QELYYD 137
           ++L   
Sbjct: 106 KDLEIT 111


>gi|293410883|ref|ZP_06654459.1| hydrogenase 4 subunit H [Escherichia coli B354]
 gi|291471351|gb|EFF13835.1| hydrogenase 4 subunit H [Escherichia coli B354]
          Length = 181

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 47/138 (34%), Gaps = 13/138 (9%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +      +R       T+ YPF     SP FRG+  L                     A
Sbjct: 1   MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG----------ACA 47

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A    +     D  + T  + + + +CIYCG C+E CP  AI    NFE     + +LY
Sbjct: 48  CACPANALTIQTDDQQNTRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 107

Query: 136 YDKERLLNNGDRWESEIV 153
                 L    R E    
Sbjct: 108 TRATFHLQRCSRCERPFA 125


>gi|284922435|emb|CBG35522.1| hydrogenase-4 component H [Escherichia coli 042]
          Length = 181

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 47/138 (34%), Gaps = 13/138 (9%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +      +R       T+ YPF     SP FRG+  L                     A
Sbjct: 1   MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG----------ACA 47

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A    +     D  + T  + + + +CIYCG C+E CP  AI    NFE     + +LY
Sbjct: 48  CACPANALTIQTDDQQNTRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 107

Query: 136 YDKERLLNNGDRWESEIV 153
                 L    R E    
Sbjct: 108 TRATFHLQRCSRCERPFA 125


>gi|301329010|ref|ZP_07222037.1| hydrogenase 4 subunit H [Escherichia coli MS 78-1]
 gi|300844644|gb|EFK72404.1| hydrogenase 4 subunit H [Escherichia coli MS 78-1]
          Length = 181

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 47/138 (34%), Gaps = 13/138 (9%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +      +R       T+ YPF     SP FRG+  L                     A
Sbjct: 1   MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG----------ACA 47

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A    +     D  + +  + + + +CIYCG C+E CP  AI    NFE     + +LY
Sbjct: 48  CACPANALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 107

Query: 136 YDKERLLNNGDRWESEIV 153
                 L    R E    
Sbjct: 108 TRATFHLQRCSRCERPFA 125


>gi|323967932|gb|EGB63344.1| 4Fe-4S binding domain-containing protein [Escherichia coli M863]
 gi|327252138|gb|EGE63810.1| hydrogenase-4 component H [Escherichia coli STEC_7v]
          Length = 181

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 48/138 (34%), Gaps = 13/138 (9%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +      +R       T+ YPF     SP FRG+  L                     A
Sbjct: 1   MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG----------ACA 47

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A    +     D  + T  + + + +CIYCG C+E CP  AI    NFE     + +LY
Sbjct: 48  CACPANALTIQTDDQQNTRTWQLYLGRCIYCGRCEEVCPTRAIQLTDNFELTVTNKADLY 107

Query: 136 YDKERLLNNGDRWESEIV 153
              +  L    R E    
Sbjct: 108 TRAKFHLQRCSRCERPFA 125


>gi|212224721|ref|YP_002307957.1| Formate hydrogen lyase subunit 6 (hydrogenase 3 component F)
           [Thermococcus onnurineus NA1]
 gi|212009678|gb|ACJ17060.1| Formate hydrogen lyase subunit 6 (hydrogenase 3 component F)
           [Thermococcus onnurineus NA1]
          Length = 165

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 42/104 (40%), Gaps = 10/104 (9%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T+ YPF K    P +RG   +         CI C  C   CP  A+      R  D  R
Sbjct: 3   VTLKYPFVKLEAPPEYRGIPQI-----DATLCIGCGACVNACPPDAL-----LRIDDYNR 52

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
                 +D+ +CI C  C+E CP  AI     FE A+  R +  
Sbjct: 53  GVREIVLDVGRCIRCARCEEVCPTGAIKLTNLFEAASPDRMDHV 96


>gi|218555264|ref|YP_002388177.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           IAI1]
 gi|300815876|ref|ZP_07096100.1| hydrogenase 4 subunit H [Escherichia coli MS 107-1]
 gi|218362032|emb|CAQ99639.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           IAI1]
 gi|300531805|gb|EFK52867.1| hydrogenase 4 subunit H [Escherichia coli MS 107-1]
          Length = 180

 Score = 69.7 bits (169), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 10/129 (7%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T +YP E  +    FRG+          ++CI C  C   CP+ A+T+E+     +   
Sbjct: 14  ATSSYPLEPIAVDKNFRGKPE-----QNPQQCIGCAACVNACPSNALTVEADLATGE--- 65

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
             + ++ ++ +CI+CG C+E CP  AI     +E A   +++       +L +       
Sbjct: 66  --LAWEFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFVLCSCRVCNRP 123

Query: 152 IVRNIVTDS 160
                  D 
Sbjct: 124 FAVQKEIDY 132


>gi|300921420|ref|ZP_07137780.1| hydrogenase 4 subunit H [Escherichia coli MS 115-1]
 gi|300411654|gb|EFJ94964.1| hydrogenase 4 subunit H [Escherichia coli MS 115-1]
          Length = 181

 Score = 69.4 bits (168), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 47/138 (34%), Gaps = 13/138 (9%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +      +R       T+ YPF     SP FRG+  L                     A
Sbjct: 1   MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG----------ACA 47

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A    +     D  + +  + + + +CIYCG C+E CP  AI    NFE     + +LY
Sbjct: 48  CACPANALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 107

Query: 136 YDKERLLNNGDRWESEIV 153
                 L    R E    
Sbjct: 108 TRATFHLQRCSRCERPFA 125


>gi|330508774|ref|YP_004385202.1| 4Fe-4S ferredoxin, iron-sulfur binding domain-containing protein
           [Methanosaeta concilii GP-6]
 gi|328929582|gb|AEB69384.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Methanosaeta
           concilii GP-6]
          Length = 193

 Score = 69.4 bits (168), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 8/129 (6%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC-HDGT 90
            T  YP          RG H L         CI C  C  +CP   I +           
Sbjct: 23  VTRLYPEFMMELPDAERGIHEL-----DATICIGCGSCARVCPNSCIEMVHFKFGNPLKN 77

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWES 150
           ++     ID  +C++CGLC + CPV+ +  G     A   R+++    + L     R+ +
Sbjct: 78  KKMQFPQIDYGRCMFCGLCVDECPVECLKMGKKVIMAGWERKDIVKGPDFLAT--KRFSA 135

Query: 151 EIVRNIVTD 159
           + V ++  +
Sbjct: 136 KEVADLEAE 144


>gi|157156396|ref|YP_001463810.1| hydrogenase 4 subunit H [Escherichia coli E24377A]
 gi|300922194|ref|ZP_07138330.1| hydrogenase 4 subunit H [Escherichia coli MS 182-1]
 gi|312973274|ref|ZP_07787446.1| hydrogenase-4 component H [Escherichia coli 1827-70]
 gi|331653913|ref|ZP_08354914.1| hydrogenase-4 component H [Escherichia coli M718]
 gi|157078426|gb|ABV18134.1| iron-sulfur cluster-binding protein [Escherichia coli E24377A]
 gi|300421433|gb|EFK04744.1| hydrogenase 4 subunit H [Escherichia coli MS 182-1]
 gi|309702766|emb|CBJ02097.1| hydrogenase-4 component H [Escherichia coli ETEC H10407]
 gi|310331869|gb|EFP99104.1| hydrogenase-4 component H [Escherichia coli 1827-70]
 gi|323936380|gb|EGB32670.1| 4Fe-4S binding domain-containing protein [Escherichia coli E1520]
 gi|323941253|gb|EGB37438.1| 4Fe-4S binding domain-containing protein [Escherichia coli E482]
 gi|331048762|gb|EGI20838.1| hydrogenase-4 component H [Escherichia coli M718]
          Length = 181

 Score = 69.4 bits (168), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 47/138 (34%), Gaps = 13/138 (9%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +      +R       T+ YPF     SP FRG+  L                     A
Sbjct: 1   MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG----------ACA 47

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A    +     D  + +  + + + +CIYCG C+E CP  AI    NFE     + +LY
Sbjct: 48  CACPANALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 107

Query: 136 YDKERLLNNGDRWESEIV 153
                 L    R E    
Sbjct: 108 TRATFHLQRCSRCERPFA 125


>gi|193069699|ref|ZP_03050651.1| formate hydrogenlyase, subunit F [Escherichia coli E110019]
 gi|192957062|gb|EDV87513.1| formate hydrogenlyase, subunit F [Escherichia coli E110019]
          Length = 180

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 10/129 (7%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T +YP E  +    FRG+          ++CI C  C   CP+ A+T+E+     +   
Sbjct: 14  ATSSYPLEPIAVDKNFRGKPE-----QNPQQCIGCAACVNACPSNALTVETDLATGE--- 65

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
             + ++ ++ +CI+CG C+E CP  AI     +E A   +++       +L +       
Sbjct: 66  --LAWEFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFVLCSCRVCNRP 123

Query: 152 IVRNIVTDS 160
                  D 
Sbjct: 124 FAVQKEIDY 132


>gi|157157477|ref|YP_001464032.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           E24377A]
 gi|218696314|ref|YP_002403981.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           55989]
 gi|256019501|ref|ZP_05433366.1| formate hydrogenlyase complex iron-sulfur subunit [Shigella sp. D9]
 gi|260856827|ref|YP_003230718.1| formate hydrogenlyase complex iron-sulfur protein HycF [Escherichia
           coli O26:H11 str. 11368]
 gi|260869395|ref|YP_003235797.1| formate hydrogenlyase complex iron-sulfur protein HycF [Escherichia
           coli O111:H- str. 11128]
 gi|293449036|ref|ZP_06663457.1| hycF [Escherichia coli B088]
 gi|300820495|ref|ZP_07100646.1| hydrogenase 4 subunit H [Escherichia coli MS 119-7]
 gi|300906777|ref|ZP_07124459.1| hydrogenase 4 subunit H [Escherichia coli MS 84-1]
 gi|300919244|ref|ZP_07135767.1| hydrogenase 4 subunit H [Escherichia coli MS 115-1]
 gi|300922238|ref|ZP_07138364.1| hydrogenase 4 subunit H [Escherichia coli MS 182-1]
 gi|301305389|ref|ZP_07211483.1| hydrogenase 4 subunit H [Escherichia coli MS 124-1]
 gi|301326245|ref|ZP_07219628.1| hydrogenase 4 subunit H [Escherichia coli MS 78-1]
 gi|331669453|ref|ZP_08370299.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli TA271]
 gi|331678694|ref|ZP_08379368.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli H591]
 gi|332280623|ref|ZP_08393036.1| formate hydrogenlyase complex iron-sulfur subunit [Shigella sp. D9]
 gi|157079507|gb|ABV19215.1| formate hydrogenlyase, subunit F [Escherichia coli E24377A]
 gi|218353046|emb|CAU98871.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           55989]
 gi|257755476|dbj|BAI26978.1| formate hydrogenlyase complex iron-sulfur protein HycF [Escherichia
           coli O26:H11 str. 11368]
 gi|257765751|dbj|BAI37246.1| formate hydrogenlyase complex iron-sulfur protein HycF [Escherichia
           coli O111:H- str. 11128]
 gi|291322126|gb|EFE61555.1| hycF [Escherichia coli B088]
 gi|300401471|gb|EFJ85009.1| hydrogenase 4 subunit H [Escherichia coli MS 84-1]
 gi|300413689|gb|EFJ96999.1| hydrogenase 4 subunit H [Escherichia coli MS 115-1]
 gi|300421368|gb|EFK04679.1| hydrogenase 4 subunit H [Escherichia coli MS 182-1]
 gi|300526759|gb|EFK47828.1| hydrogenase 4 subunit H [Escherichia coli MS 119-7]
 gi|300839309|gb|EFK67069.1| hydrogenase 4 subunit H [Escherichia coli MS 124-1]
 gi|300847090|gb|EFK74850.1| hydrogenase 4 subunit H [Escherichia coli MS 78-1]
 gi|315254502|gb|EFU34470.1| hydrogenase 4 subunit H [Escherichia coli MS 85-1]
 gi|320202370|gb|EFW76940.1| Formate hydrogenlyase complex 3 iron-sulfur protein [Escherichia
           coli EC4100B]
 gi|323154936|gb|EFZ41128.1| formate hydrogenlyase subunit 6 [Escherichia coli EPECa14]
 gi|323180141|gb|EFZ65693.1| formate hydrogenlyase subunit 6 [Escherichia coli 1180]
 gi|323183247|gb|EFZ68644.1| formate hydrogenlyase subunit 6 [Escherichia coli 1357]
 gi|323946399|gb|EGB42427.1| 4Fe-4S binding domain-containing protein [Escherichia coli H120]
 gi|324119970|gb|EGC13848.1| 4Fe-4S binding domain-containing protein [Escherichia coli E1167]
 gi|331063121|gb|EGI35034.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli TA271]
 gi|331073524|gb|EGI44845.1| formate hydrogenlyase subunit 6 (FHL subunit 6)
           (Hydrogenase-3component F) [Escherichia coli H591]
 gi|332102975|gb|EGJ06321.1| formate hydrogenlyase complex iron-sulfur subunit [Shigella sp. D9]
          Length = 180

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 10/129 (7%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T +YP E  +    FRG+          ++CI C  C   CP+ A+T+E+     +   
Sbjct: 14  ATSSYPLEPIAVDKNFRGKPE-----QNPQQCIGCAACVNACPSNALTVETDLATGE--- 65

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
             + ++ ++ +CI+CG C+E CP  AI     +E A   +++       +L +       
Sbjct: 66  --LAWEFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFVLCSCRVCNRP 123

Query: 152 IVRNIVTDS 160
                  D 
Sbjct: 124 FAVQKEIDY 132


>gi|300940270|ref|ZP_07154867.1| hydrogenase 4 subunit H [Escherichia coli MS 21-1]
 gi|300454911|gb|EFK18404.1| hydrogenase 4 subunit H [Escherichia coli MS 21-1]
          Length = 181

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 47/138 (34%), Gaps = 13/138 (9%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +      +R       T+ YPF     SP FRG+  L                     A
Sbjct: 1   MLKLLKTIMRT---GTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG----------ACA 47

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A    +     D  + T  + + + +CIYCG C+E CP  AI    NFE     + +LY
Sbjct: 48  CACPANALTIQTDDQQNTRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 107

Query: 136 YDKERLLNNGDRWESEIV 153
                 L    R E    
Sbjct: 108 TRATFHLQRCSRCERPFA 125


>gi|194432084|ref|ZP_03064373.1| iron-sulfur cluster-binding protein [Shigella dysenteriae 1012]
 gi|194419613|gb|EDX35693.1| iron-sulfur cluster-binding protein [Shigella dysenteriae 1012]
 gi|320180472|gb|EFW55403.1| Hydrogenase-4 component H [Shigella boydii ATCC 9905]
 gi|332087932|gb|EGI93057.1| hydrogenase-4 component H [Shigella boydii 5216-82]
 gi|332089822|gb|EGI94923.1| hydrogenase-4 component H [Shigella dysenteriae 155-74]
          Length = 181

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 47/138 (34%), Gaps = 13/138 (9%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +      +R       T+ YPF     SP FRG+  L                     A
Sbjct: 1   MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG----------ACA 47

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A    +     D  + +  + + + +CIYCG C+E CP  AI    NFE     + +LY
Sbjct: 48  CACPANALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 107

Query: 136 YDKERLLNNGDRWESEIV 153
                 L    R E    
Sbjct: 108 TRATFHLQRCSRCERPFA 125


>gi|218700946|ref|YP_002408575.1| hydrogenase 4 subunit H [Escherichia coli IAI39]
 gi|218370932|emb|CAR18751.1| hydrogenase 4, Fe-S subunit [Escherichia coli IAI39]
          Length = 181

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 47/138 (34%), Gaps = 13/138 (9%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +      +R       T+ YPF     SP FRG+  L                     A
Sbjct: 1   MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG----------ACA 47

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A    +     D  + +  + + + +CIYCG C+E CP  AI    NFE     + +LY
Sbjct: 48  CACPANALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 107

Query: 136 YDKERLLNNGDRWESEIV 153
                 L    R E    
Sbjct: 108 TRATFHLQRCSRCERPFA 125


>gi|331664045|ref|ZP_08364955.1| hydrogenase-4 component H [Escherichia coli TA143]
 gi|331059844|gb|EGI31821.1| hydrogenase-4 component H [Escherichia coli TA143]
          Length = 181

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 47/138 (34%), Gaps = 13/138 (9%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +      +R       T+ YPF     SP FRG+  L                     A
Sbjct: 1   MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG----------ACA 47

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A    +     D  + T  + + + +CIYCG C+E CP  AI    NFE     + +LY
Sbjct: 48  CACPANALTIQTDDQQNTRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 107

Query: 136 YDKERLLNNGDRWESEIV 153
                 L    R E    
Sbjct: 108 TRATFHLQRCSRCERPFA 125


>gi|170680047|ref|YP_001744671.1| hydrogenase 4 subunit H [Escherichia coli SMS-3-5]
 gi|170517765|gb|ACB15943.1| iron-sulfur cluster-binding protein [Escherichia coli SMS-3-5]
          Length = 181

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 47/138 (34%), Gaps = 13/138 (9%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +      +R       T+ YPF     SP FRG+  L                     A
Sbjct: 1   MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG----------ACA 47

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A    +     D  + T  + + + +CIYCG C+E CP  AI    NFE     + +LY
Sbjct: 48  CACPANALTIQTDDQQNTRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 107

Query: 136 YDKERLLNNGDRWESEIV 153
                 L    R E    
Sbjct: 108 TRATFHLQRCSRCERPFA 125


>gi|218705987|ref|YP_002413506.1| hydrogenase 4 subunit H [Escherichia coli UMN026]
 gi|293405924|ref|ZP_06649916.1| hydrogenase 4 subunit H [Escherichia coli FVEC1412]
 gi|298381672|ref|ZP_06991271.1| hydrogenase 4 subunit H [Escherichia coli FVEC1302]
 gi|300897631|ref|ZP_07116036.1| hydrogenase 4 subunit H [Escherichia coli MS 198-1]
 gi|218433084|emb|CAR13979.1| hydrogenase 4, Fe-S subunit [Escherichia coli UMN026]
 gi|291428132|gb|EFF01159.1| hydrogenase 4 subunit H [Escherichia coli FVEC1412]
 gi|298279114|gb|EFI20628.1| hydrogenase 4 subunit H [Escherichia coli FVEC1302]
 gi|300358631|gb|EFJ74501.1| hydrogenase 4 subunit H [Escherichia coli MS 198-1]
          Length = 181

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 47/138 (34%), Gaps = 13/138 (9%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +      +R       T+ YPF     SP FRG+  L                     A
Sbjct: 1   MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG----------ACA 47

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A    +     D  + T  + + + +CIYCG C+E CP  AI    NFE     + +LY
Sbjct: 48  CACPANALTIQTDDQQNTRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 107

Query: 136 YDKERLLNNGDRWESEIV 153
                 L    R E    
Sbjct: 108 TRATFHLQRCSRCERPFA 125


>gi|16130413|ref|NP_416983.1| hydrogenase 4, Fe-S subunit [Escherichia coli str. K-12 substr.
           MG1655]
 gi|89109294|ref|AP_003074.1| hydrogenase 4, Fe-S subunit [Escherichia coli str. K-12 substr.
           W3110]
 gi|170082098|ref|YP_001731418.1| hydrogenase 4, Fe-S subunit [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238901653|ref|YP_002927449.1| hydrogenase 4, Fe-S subunit [Escherichia coli BW2952]
 gi|256021826|ref|ZP_05435691.1| hydrogenase 4 subunit H [Escherichia sp. 4_1_40B]
 gi|300951812|ref|ZP_07165625.1| hydrogenase 4 subunit H [Escherichia coli MS 116-1]
 gi|300958885|ref|ZP_07170991.1| hydrogenase 4 subunit H [Escherichia coli MS 175-1]
 gi|301023873|ref|ZP_07187604.1| hydrogenase 4 subunit H [Escherichia coli MS 196-1]
 gi|301644478|ref|ZP_07244475.1| hydrogenase 4 subunit H [Escherichia coli MS 146-1]
 gi|307139122|ref|ZP_07498478.1| hydrogenase 4 subunit H [Escherichia coli H736]
 gi|331643105|ref|ZP_08344240.1| hydrogenase-4 component H [Escherichia coli H736]
 gi|2494437|sp|P77423|HYFH_ECOLI RecName: Full=Hydrogenase-4 component H
 gi|1616957|gb|AAB88570.1| HyfH [Escherichia coli]
 gi|1788833|gb|AAC75541.1| hydrogenase 4, Fe-S subunit [Escherichia coli str. K-12 substr.
           MG1655]
 gi|1805547|dbj|BAA16376.1| hydrogenase 4, Fe-S subunit [Escherichia coli str. K12 substr.
           W3110]
 gi|169889933|gb|ACB03640.1| hydrogenase 4, Fe-S subunit [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238861460|gb|ACR63458.1| hydrogenase 4, Fe-S subunit [Escherichia coli BW2952]
 gi|260448433|gb|ACX38855.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia
           coli DH1]
 gi|299880627|gb|EFI88838.1| hydrogenase 4 subunit H [Escherichia coli MS 196-1]
 gi|300314487|gb|EFJ64271.1| hydrogenase 4 subunit H [Escherichia coli MS 175-1]
 gi|300448959|gb|EFK12579.1| hydrogenase 4 subunit H [Escherichia coli MS 116-1]
 gi|301077223|gb|EFK92029.1| hydrogenase 4 subunit H [Escherichia coli MS 146-1]
 gi|315137111|dbj|BAJ44270.1| hydrogenase 4 subunit H [Escherichia coli DH1]
 gi|315615731|gb|EFU96363.1| hydrogenase-4 component H [Escherichia coli 3431]
 gi|331039903|gb|EGI12123.1| hydrogenase-4 component H [Escherichia coli H736]
 gi|332344308|gb|AEE57642.1| hydrogenase-4, subunit H [Escherichia coli UMNK88]
          Length = 181

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 47/138 (34%), Gaps = 13/138 (9%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +      +R       T+ YPF     SP FRG+  L                     A
Sbjct: 1   MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG----------ACA 47

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A    +     D  + +  + + + +CIYCG C+E CP  AI    NFE     + +LY
Sbjct: 48  CACPANALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 107

Query: 136 YDKERLLNNGDRWESEIV 153
                 L    R E    
Sbjct: 108 TRATFHLQRCSRCERPFA 125


>gi|209920159|ref|YP_002294243.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           SE11]
 gi|209913418|dbj|BAG78492.1| formate hydrogenlyase subunit [Escherichia coli SE11]
 gi|324017033|gb|EGB86252.1| hydrogenase 4 subunit H [Escherichia coli MS 117-3]
          Length = 180

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 10/104 (9%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T +YP E  +    FRG+          ++CI C  C   CP+ A+T+E+     +   
Sbjct: 14  ATSSYPLEPIAVDKNFRGKPE-----QNPQQCIGCAACVNACPSNALTVETDLATGE--- 65

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
             + ++ ++ +CI+CG C+E CP  AI     +E A   +++  
Sbjct: 66  --LAWEFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFL 107


>gi|301024710|ref|ZP_07188353.1| hydrogenase 4 subunit H [Escherichia coli MS 69-1]
 gi|331673943|ref|ZP_08374706.1| hydrogenase-4 component H [Escherichia coli TA280]
 gi|300396441|gb|EFJ79979.1| hydrogenase 4 subunit H [Escherichia coli MS 69-1]
 gi|331069216|gb|EGI40608.1| hydrogenase-4 component H [Escherichia coli TA280]
          Length = 181

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 47/138 (34%), Gaps = 13/138 (9%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +      +R       T+ YPF     SP FRG+  L                     A
Sbjct: 1   MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG----------ACA 47

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A    +     D  + +  + + + +CIYCG C+E CP  AI    NFE     + +LY
Sbjct: 48  CACPANALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 107

Query: 136 YDKERLLNNGDRWESEIV 153
                 L    R E    
Sbjct: 108 TRATFHLQRCSRCERPFA 125


>gi|323977334|gb|EGB72420.1| 4Fe-4S binding domain-containing protein [Escherichia coli TW10509]
          Length = 181

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 34/138 (24%), Positives = 47/138 (34%), Gaps = 13/138 (9%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +      +R       T+ YPF     SP FRG+  L                     A
Sbjct: 1   MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG----------ACA 47

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A    +     D  + T  + + + +CIYCG C+E CP  AI    NFE     + +LY
Sbjct: 48  CACPANALTIQTDDQQNTRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 107

Query: 136 YDKERLLNNGDRWESEIV 153
                 L    R E    
Sbjct: 108 TRATFHLQRCSRCERPFA 125


>gi|268324500|emb|CBH38088.1| hypothetical protein containing 4Fe-4S binding domains [uncultured
           archaeon]
          Length = 244

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/128 (24%), Positives = 48/128 (37%), Gaps = 12/128 (9%)

Query: 17  VGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
             A     +        T  YP E+      FRG           ERCI+C  C  +CPA
Sbjct: 19  ASALATAAKEVVAPLSITTQYPRERRKWPDCFRGYILF-----DPERCISCFECSFVCPA 73

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            AI ++                +D  KCI+C  C ++CP  A+      + +     E++
Sbjct: 74  NAIWMKEAKSG------RFYPTLDYGKCIFCHFCVDSCPGGALRTTKIHDVSYTNMDEMF 127

Query: 136 YDKERLLN 143
            D E ++ 
Sbjct: 128 TDTEEMIE 135



 Score = 42.0 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +         CIACK+CE +C + A++           +  +R +ID   C  CGLC + 
Sbjct: 179 MVSVCVDRASCIACKVCEKVCESGAVSSSLDEA-----KMVIRMEIDSEVCTGCGLCVKE 233

Query: 113 C 113
           C
Sbjct: 234 C 234


>gi|157954630|gb|ABW05547.1| formate hydrogenlyase subunit G [Thermococcus litoralis DSM 5473]
          Length = 165

 Score = 69.4 bits (168), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 10/105 (9%)

Query: 31  KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT 90
             T  YPFE     P +RG   +         C+ C  C   CP  A+      +  D  
Sbjct: 2   PVTKYYPFEPEQAPPEYRGIPEI-----DPRLCVGCGACVNACPPDAL-----IKIDDYE 51

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
           + T +  +D+ +CI C  C+E CP  AI     FE A++ R    
Sbjct: 52  KGTRKIVLDIGRCIRCARCEEVCPTGAIRLTQEFEAASDDRSSHV 96


>gi|56414800|ref|YP_151875.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|197363728|ref|YP_002143365.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|56129057|gb|AAV78563.1| formate hydrogenlyase subunit 6 [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197095205|emb|CAR60756.1| formate hydrogenlyase subunit 6 [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 180

 Score = 69.0 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 10/104 (9%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T +YP E  +    FRG+       +  ++CI C  C   CP+ A+T+E+    ++   
Sbjct: 14  ATSSYPLEPIAVDKNFRGKPE-----HNPQQCIGCAACVNACPSNALTVETLLATNE--- 65

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
             + +  ++ +CI+CG C+E CP  AI     +E A   +++  
Sbjct: 66  --LAWQFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFL 107


>gi|332999463|gb|EGK19048.1| formate hydrogenlyase subunit 6 [Shigella flexneri VA-6]
          Length = 180

 Score = 69.0 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 10/129 (7%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T +YP E  +    FRG+          ++CI C  C   CP+ A+T+E+     +   
Sbjct: 14  ATSSYPLEPIAVDKNFRGKPE-----QNPQQCIGCAACVNACPSNALTVETDLATGE--- 65

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
             + ++ ++ +CI+CG C+E CP  AI     +E A   ++         L N       
Sbjct: 66  --LAWEFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKENFLQQSRFALCNCRVCNRP 123

Query: 152 IVRNIVTDS 160
                  D 
Sbjct: 124 FAVQKEIDY 132


>gi|11500028|ref|NP_071278.1| NADH dehydrogenase subunit I [Archaeoglobus fulgidus DSM 4304]
          Length = 148

 Score = 69.0 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 13/104 (12%)

Query: 31  KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT 90
           + T+ YP E+      FRG           E+CI+C  C  ICPA AI +E   R + G 
Sbjct: 34  RITVEYPRERRRYPECFRGFIVF-----DREKCISCFRCAQICPANAIQMEYFDRAYPG- 87

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134
                  ID  KCI+C  C ++CP  A+      + A ++  E+
Sbjct: 88  -------IDYAKCIFCHFCVDSCPTGALNTSKVHDVAFKSMDEM 124


>gi|78043124|ref|YP_360649.1| carbon monoxide-induced hydrogenase, iron-sulfur cluster-binding
           subunit [Carboxydothermus hydrogenoformans Z-2901]
 gi|77995239|gb|ABB14138.1| carbon monoxide-induced hydrogenase, iron-sulfur cluster-binding
           subunit [Carboxydothermus hydrogenoformans Z-2901]
          Length = 165

 Score = 69.0 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 10/117 (8%)

Query: 20  FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79
             + LR  FK+ TT  YPF +       RG+            CIAC++CE +C   AI 
Sbjct: 5   LKIALRNLFKSPTTDPYPFGETFVPKGLRGKA-----KYNAGACIACRMCEHVCAGGAIQ 59

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
           I          +  + + +    C +CGLC+  CP  AI    ++  A     +  Y
Sbjct: 60  I-----REVADKSGLEFILWHNTCTFCGLCEYYCPTKAIRLTEDYHTAHRQEDKYRY 111


>gi|24113817|ref|NP_708327.1| hydrogenase 4 subunit H [Shigella flexneri 2a str. 301]
 gi|30063864|ref|NP_838035.1| hydrogenase 4 subunit H [Shigella flexneri 2a str. 2457T]
 gi|110806419|ref|YP_689939.1| hydrogenase 4 subunit H [Shigella flexneri 5 str. 8401]
 gi|24052904|gb|AAN44034.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 2a str. 301]
 gi|30042119|gb|AAP17845.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 2a str. 2457T]
 gi|110615967|gb|ABF04634.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 5 str. 8401]
 gi|281601891|gb|ADA74875.1| Hydrogenase 4 Fe-S subunit [Shigella flexneri 2002017]
 gi|313650946|gb|EFS15346.1| hydrogenase-4 component H [Shigella flexneri 2a str. 2457T]
 gi|332755131|gb|EGJ85496.1| hydrogenase-4 component H [Shigella flexneri 4343-70]
 gi|332755531|gb|EGJ85895.1| hydrogenase-4 component H [Shigella flexneri K-671]
 gi|332756410|gb|EGJ86761.1| hydrogenase-4 component H [Shigella flexneri 2747-71]
 gi|333001992|gb|EGK21558.1| hydrogenase-4 component H [Shigella flexneri K-218]
 gi|333016469|gb|EGK35800.1| hydrogenase-4 component H [Shigella flexneri K-304]
          Length = 181

 Score = 69.0 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 47/138 (34%), Gaps = 13/138 (9%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +      +R       T+ YPF     SP FRG+  L                     A
Sbjct: 1   MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG----------ACA 47

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A    +     D  + +  + + + +CIYCG C+E CP  AI    NFE     + +LY
Sbjct: 48  CACPANALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTHKADLY 107

Query: 136 YDKERLLNNGDRWESEIV 153
                 L    R E    
Sbjct: 108 THATFHLQRCSRCERPFA 125


>gi|320100263|ref|YP_004175855.1| NADH dehydrogenase subunit I [Desulfurococcus mucosus DSM 2162]
 gi|319752615|gb|ADV64373.1| NADH dehydrogenase subunit I [Desulfurococcus mucosus DSM 2162]
          Length = 172

 Score = 69.0 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 31/107 (28%), Positives = 45/107 (42%), Gaps = 12/107 (11%)

Query: 31  KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT 90
           + T  YPFE+   +P FRG+  +        +CI C  C   CP  A+ +          
Sbjct: 19  RATRKYPFEEPLVTPDFRGKVEI-----DASKCIGCGACVNACPPNALQLIEDSEK---- 69

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
              +     + +CI+C  C + CPV AI     FE AT    +LY  
Sbjct: 70  ---LVLRYFIGRCIFCWRCIDVCPVKAIKGTREFELATNDVADLYVH 113


>gi|240102092|ref|YP_002958400.1| NADH-plastoquinone oxidoreductase subunit [Thermococcus
           gammatolerans EJ3]
 gi|239909645|gb|ACS32536.1| membrane bound hydrogenase, MbhN subunit (MbhN) [Thermococcus
           gammatolerans EJ3]
          Length = 145

 Score = 69.0 bits (167), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 42/113 (37%), Gaps = 15/113 (13%)

Query: 22  LCLRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80
             L+   K   T  +P  E       FRG           ++C+ C++C  +CPA     
Sbjct: 9   TVLKNLTKKPATNLFPKTEPVPVPEDFRGMI-----TYDVDKCVGCRMCYNVCPAGVFVC 63

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
               R         +  +   +CIYCG C + CP  A+    +F  A+    +
Sbjct: 64  LPEIR---------KVALWTARCIYCGQCVDVCPTGALKLSRDFLLASYDNHD 107


>gi|300817747|ref|ZP_07097962.1| hydrogenase 4 subunit H [Escherichia coli MS 107-1]
 gi|300529735|gb|EFK50797.1| hydrogenase 4 subunit H [Escherichia coli MS 107-1]
          Length = 181

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 47/138 (34%), Gaps = 13/138 (9%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +      +R       T+ YPF     SP FRG+  L                     A
Sbjct: 1   MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG----------ACA 47

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A    +     D  + +  + + + +CIYCG C+E CP  AI    NFE     + +LY
Sbjct: 48  CACPANALTIQTDDQQNSHTWQLYLRRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 107

Query: 136 YDKERLLNNGDRWESEIV 153
                 L    R E    
Sbjct: 108 TRATFHLQRCSRCERPFA 125


>gi|260856583|ref|YP_003230474.1| hydrogenase 4, Fe-S subunit HyfH [Escherichia coli O26:H11 str.
           11368]
 gi|260869178|ref|YP_003235580.1| hydrogenase 4, Fe-S subunit HyfH [Escherichia coli O111:H- str.
           11128]
 gi|257755232|dbj|BAI26734.1| hydrogenase 4, Fe-S subunit HyfH [Escherichia coli O26:H11 str.
           11368]
 gi|257765534|dbj|BAI37029.1| hydrogenase 4, Fe-S subunit HyfH [Escherichia coli O111:H- str.
           11128]
 gi|323156091|gb|EFZ42250.1| hydrogenase-4 component H [Escherichia coli EPECa14]
 gi|323177392|gb|EFZ62980.1| hydrogenase-4 component H [Escherichia coli 1180]
          Length = 181

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 47/138 (34%), Gaps = 13/138 (9%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +      +R       T+ YPF     SP FRG+  L                     A
Sbjct: 1   MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG----------ACA 47

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A    +     D  + +  + + + +CIYCG C+E CP  AI    NFE     + +LY
Sbjct: 48  CACPANALTIQTDDQQNSRTWQLYLRRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 107

Query: 136 YDKERLLNNGDRWESEIV 153
                 L    R E    
Sbjct: 108 TRATFHLQRCSRCERPFA 125


>gi|256017365|ref|ZP_05431230.1| hydrogenase 4 subunit H [Shigella sp. D9]
 gi|332278364|ref|ZP_08390777.1| iron-sulfur cluster-binding protein [Shigella sp. D9]
 gi|323944708|gb|EGB40775.1| 4Fe-4S binding domain-containing protein [Escherichia coli H120]
 gi|332100716|gb|EGJ04062.1| iron-sulfur cluster-binding protein [Shigella sp. D9]
          Length = 181

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/141 (23%), Positives = 48/141 (34%), Gaps = 13/141 (9%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +      +R       T+ YPF     SP FRG+  L                     A
Sbjct: 1   MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG----------ACA 47

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A    +     D  + +  + + + +CIYCG C+E CP  AI    NFE     + +LY
Sbjct: 48  CACPANALTIQTDDQQNSRTWQLYLRRCIYCGRCEEVCPTRAIQLTNNFEPTVTNKADLY 107

Query: 136 YDKERLLNNGDRWESEIVRNI 156
                 L    R E    +  
Sbjct: 108 TRATFHLQRCSRCERPFAQQK 128


>gi|319789456|ref|YP_004151089.1| NADH-ubiquinone oxidoreductase 23 kda subunit [Thermovibrio
           ammonificans HB-1]
 gi|317113958|gb|ADU96448.1| NADH-ubiquinone oxidoreductase 23 kda subunit [Thermovibrio
           ammonificans HB-1]
          Length = 136

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 37/93 (39%), Gaps = 11/93 (11%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            ++  F    T+ YP E     P +RG    +     EE CI C  CE +CP  AI    
Sbjct: 8   TIKNLFSKPVTVKYPQELSPPPPNYRGVIVYK-----EELCIFCTKCELVCPPGAIRFTY 62

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
                       ++  +   CIYCG C  ACP 
Sbjct: 63  SEDGS------KKFHYNPYLCIYCGECVRACPK 89


>gi|295105898|emb|CBL03441.1| hypothetical protein [Gordonibacter pamelaeae 7-10-1-b]
          Length = 122

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 15/114 (13%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80
            + L+  F    TI YP E+ +  P  +G        N  + CI C +C   CP  AIT+
Sbjct: 8   KMTLKSLFGKPETIQYPVEQKTPPPGLKGHV-----TNNVDACILCGICMKRCPCDAITV 62

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF-EFATETRQE 133
           +   R          + I+  +C+ CG C   CP   +   P +   ATE R +
Sbjct: 63  DKPART---------WSINRFRCVQCGTCVRECPKQCLAMEPTYTPPATEKRSD 107


>gi|317486366|ref|ZP_07945194.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
 gi|316922355|gb|EFV43613.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
          Length = 170

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/99 (30%), Positives = 40/99 (40%), Gaps = 14/99 (14%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
             LR F K   T  YP  K      +RG        N  E CI C++C   CPAQ I+ +
Sbjct: 6   TILRNFLKRPATRKYPMVKRDPFSNYRGRLI-----NNVESCIFCRMCSTKCPAQCISTD 60

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
                         +  D   C+YCG+C E CP  ++  
Sbjct: 61  PKEAF---------WGYDPFSCVYCGICVEVCPTKSLFM 90


>gi|213865415|ref|ZP_03387534.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 81

 Score = 68.6 bits (166), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 23/42 (54%), Positives = 29/42 (69%)

Query: 104 IYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNG 145
           I+CGLC+EACP  AI   P+FE     RQ+L Y+KE LL +G
Sbjct: 1   IFCGLCEEACPTTAIQLTPDFELGEYKRQDLVYEKEDLLISG 42


>gi|333001623|gb|EGK21191.1| hydrogenase-4 component H [Shigella flexneri VA-6]
          Length = 181

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 47/138 (34%), Gaps = 13/138 (9%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +      +R       T+ YPF     SP FRG+  L                     A
Sbjct: 1   MLKLLKTIMR---AGTPTVKYPFAPLEVSPGFRGKPDLMPSQCIACG----------ACA 47

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A    +     D  + +  + + + +CIYCG C+E CP  AI    NFE     + +LY
Sbjct: 48  CACPANALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTHKADLY 107

Query: 136 YDKERLLNNGDRWESEIV 153
                 L    R E    
Sbjct: 108 THATFHLQRCSRCERPFA 125


>gi|283835552|ref|ZP_06355293.1| formate hydrogenlyase subunit 6 [Citrobacter youngae ATCC 29220]
 gi|291068762|gb|EFE06871.1| formate hydrogenlyase subunit 6 [Citrobacter youngae ATCC 29220]
          Length = 180

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 10/128 (7%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
           T +YP E  +    FRG+       +  ++CI C  C   CP+ A+T+E+    ++    
Sbjct: 15  TSSYPLEPIAVDKNFRGKPE-----HNPQQCIGCAACVNACPSNALTVETDLVTNE---- 65

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEI 152
            + +  ++ +CI+C  C+E CP  AI     +E A   +++        L N        
Sbjct: 66  -LAWQFNLGRCIFCARCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFSLCNCRVCNRPF 124

Query: 153 VRNIVTDS 160
                 D 
Sbjct: 125 AVQKEIDY 132


>gi|298530615|ref|ZP_07018017.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509989|gb|EFI33893.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 179

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 33/154 (21%), Positives = 52/154 (33%), Gaps = 30/154 (19%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER--CIACKLCE 70
           +   +    +    F   + T++YP +  +    +RG   L        +  CIAC  C 
Sbjct: 13  MWSLLVGMKVTAVNFKSPQITVHYPRQVTNL-DGYRGHIELVPSDEDPTKSKCIACSNCV 71

Query: 71  AICPAQAITIESGPRCHDGTRRTVR---------------------------YDIDMIKC 103
            ICP   I++++                                        + +D   C
Sbjct: 72  RICPGACISLKASKPKKKAAEEKKAAPGTETETQPEGKKEAPPKKAKPELQSFVLDYNYC 131

Query: 104 IYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
             CGLC E+CP  A+    +   A  TRQE  YD
Sbjct: 132 CLCGLCVESCPSGALRYSSDVYVAGFTRQEFVYD 165


>gi|258646995|ref|ZP_05734464.1| formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
           kD subunit [Dialister invisus DSM 15470]
 gi|260404436|gb|EEW97983.1| formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
           kD subunit [Dialister invisus DSM 15470]
          Length = 412

 Score = 68.2 bits (165), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 14/112 (12%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
             FK   T +YP +  +  P  RG        N  E+CI C  CE  CP+ AI I+    
Sbjct: 13  NLFKPPVTSSYPLQPRTPLPIDRGHIV-----NQWEKCILCGACERACPSGAIRID---- 63

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
                R+  ++ I+   C+ CG C E CP+  +     +   +  + E+ + 
Sbjct: 64  -----RKNRKWIINPYACVQCGACVEQCPMKCLAMEGMYTEPSTEKSEIVHT 110



 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           N   +C+ C +C   C   A+ I+         R+   + ID   C+ CG+C E CP   
Sbjct: 196 NDVSKCVLCGMCLRGCVGGALDID---------RKRRTWTIDPAACVQCGVCVEHCPKQC 246

Query: 118 IVEGPNFEFATE 129
           +     + F  +
Sbjct: 247 LSLNEAYTFTAD 258



 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 31/94 (32%), Gaps = 9/94 (9%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P E  S     R E       N    C+ C      CP  A+ I+         R+   +
Sbjct: 301 PKETLSGKETERKETEKIPVINDVSECVLCGKYTDGCPGSALEID---------RKNRTW 351

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
            ID   C+ C +C E CP   +     +    + 
Sbjct: 352 TIDPAACVQCDICVENCPKQCLSMNKEYVLGADD 385


>gi|326202294|ref|ZP_08192163.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           papyrosolvens DSM 2782]
 gi|325987412|gb|EGD48239.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           papyrosolvens DSM 2782]
          Length = 124

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 44/118 (37%), Gaps = 13/118 (11%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                    +       T  YPFEK       RG+          ++CI C +C+  CPA
Sbjct: 1   MFKMMENVFKNLASKPATRMYPFEKREPFKDSRGQIE----GIEIDKCIFCGICQRKCPA 56

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
            AI +    +          ++I+  KC+ C  C EACP   IV     + A   ++ 
Sbjct: 57  NAIVVNKAEKS---------WEINQFKCVICNACVEACPKKCIVASAEHKTAATKKEN 105


>gi|224373086|ref|YP_002607458.1| carbon monoxide-induced hydrogenase, iron-sulfur cluster-binding
           subunit [Nautilia profundicola AmH]
 gi|223589184|gb|ACM92920.1| carbon monoxide-induced hydrogenase, iron-sulfur cluster-binding
           subunit [Nautilia profundicola AmH]
          Length = 167

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 44/117 (37%), Gaps = 12/117 (10%)

Query: 20  FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79
             + +R   K  TT  YPF       + RG+  +       + C AC  CE +CP+ AI 
Sbjct: 5   LKIAIRNLLKGPTTDPYPFGPTFIPDKLRGKLKV-----DAKACTACGTCEEVCPSGAIH 59

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
           I               +      C +CG C+  CP  AI    +F  A    ++  +
Sbjct: 60  ITKNENV-------YVHTTWYNTCCFCGNCEFFCPTGAIKLTNDFHTANTEAEKFKF 109


>gi|218559710|ref|YP_002392623.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           S88]
 gi|218366479|emb|CAR04231.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli
           S88]
          Length = 180

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/129 (24%), Positives = 52/129 (40%), Gaps = 10/129 (7%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T +YP E  +    FRG+          ++CI C  C   CP+ A+T+E+     +   
Sbjct: 14  ATSSYPLEPIAVDKNFRGKPE-----QNPQQCIGCAACVNACPSNALTVETDLATGE--- 65

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
             + +  D+ +CI+CG C+E CP  AI     +E A   +++        L N       
Sbjct: 66  --LAWQFDLGRCIFCGRCEEFCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRP 123

Query: 152 IVRNIVTDS 160
                  D 
Sbjct: 124 FAVQKEIDY 132


>gi|34558136|ref|NP_907951.1| formate hydrogenlyase complex iron-sulfur subunit [Wolinella
           succinogenes DSM 1740]
 gi|34483854|emb|CAE10851.1| HYDROGENASE 4 FE-S SUBUNIT [Wolinella succinogenes]
          Length = 179

 Score = 68.2 bits (165), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 51/116 (43%), Gaps = 16/116 (13%)

Query: 31  KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT 90
           K T  YPF     +  FRG+ A          CI C  C   CP+ AIT+E     +   
Sbjct: 13  KITHQYPFAPYKVADHFRGKPAYVFD-----LCIGCAACGVACPSNAITVELNQEQNK-- 65

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGD 146
              + ++ D  +CI+CG C E CP  AI     FE A +      +DK  L+  G+
Sbjct: 66  ---LIWEFDCGRCIFCGRCDEVCPTGAIRLSEEFELAVK------FDKSALIQRGE 112


>gi|90425975|ref|YP_534345.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodopseudomonas palustris
           BisB18]
 gi|90107989|gb|ABD90026.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodopseudomonas palustris
           BisB18]
          Length = 166

 Score = 67.8 bits (164), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 12/108 (11%)

Query: 20  FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79
             +      K  +T  +PF + +T   +RG+         E  C+ C +CE +C A AI 
Sbjct: 4   LKILWDNLRKGPSTEAFPFGEATTPAGYRGKVTF-----DEATCVGCNMCEHVCAAGAIR 58

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
                         + + I    C+ CGLC   CP  AI    ++  +
Sbjct: 59  FAEADDG-------LHFVIWHNTCVSCGLCAYYCPTKAIKLSNDWHLS 99


>gi|332766296|gb|EGJ96506.1| 4Fe-4S binding domain protein [Shigella flexneri 2930-71]
          Length = 173

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 44/127 (34%), Gaps = 10/127 (7%)

Query: 27  FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC 86
                 T+ YPF     SP FRG+  L                     A A    +    
Sbjct: 1   MRAGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG----------ACACACPANALTIQ 50

Query: 87  HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGD 146
            D  + +  + + + +CIYCG C+E CP  AI    NFE     + +LY      L    
Sbjct: 51  TDDQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTHKADLYTHATFHLQRCS 110

Query: 147 RWESEIV 153
           R E    
Sbjct: 111 RCERPFA 117


>gi|298244919|ref|ZP_06968725.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Ktedonobacter racemifer DSM 44963]
 gi|297552400|gb|EFH86265.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
          [Ktedonobacter racemifer DSM 44963]
          Length = 246

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 4/90 (4%)

Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYP----NGEERCIACKL 68
          ++  +    L   + F+ K T  YP+EK    PR RG   L            +C AC L
Sbjct: 1  MRGILEGMSLTFSHMFRPKVTRLYPYEKPKLPPRSRGLIQLIAQEGLKTEFNLKCEACLL 60

Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDI 98
          CE  CP +AITIE  P      R   +  I
Sbjct: 61 CEKACPPRAITIEYEPMYEWRERPWYKSYI 90


>gi|297521336|ref|ZP_06939722.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli
           OP50]
          Length = 104

 Score = 67.8 bits (164), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 10/101 (9%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T +YP E  +    FRG+          ++CI C  C   CP+ A+T+E+     +   
Sbjct: 14  ATSSYPLEPIAVDKNFRGKPE-----QNPQQCIGCAACVNACPSNALTVETDLATGE--- 65

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
             + ++ ++ +CI+CG C+E CP  AI     +E A   ++
Sbjct: 66  --LAWEFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKE 104


>gi|303241787|ref|ZP_07328283.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acetivibrio
           cellulolyticus CD2]
 gi|302590668|gb|EFL60420.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acetivibrio
           cellulolyticus CD2]
          Length = 121

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 14/124 (11%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80
                  F+   T+ YP  K   +   RG+  L       E C+ C +C+  CP  AIT+
Sbjct: 8   KTIFANLFRKPATLMYPVVKREFTRNTRGKVEL-----NIETCVFCGICQKKCPTGAITV 62

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140
           +         R   +++I+  KCI C  C E+CP   +  G  +   + T+ +  ++  R
Sbjct: 63  D---------RANKKWEIERFKCIACSYCVESCPKKCLAMGNEYSKPSATKDKEVFEDAR 113

Query: 141 LLNN 144
           +L+N
Sbjct: 114 VLDN 117


>gi|156937933|ref|YP_001435729.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Ignicoccus hospitalis KIN4/I]
 gi|156566917|gb|ABU82322.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Ignicoccus
           hospitalis KIN4/I]
          Length = 189

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 6/107 (5%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            + +      Y  +++ T  YPFEK      FRG           E+CI C  C   CP 
Sbjct: 22  VLKSLKAVAEYLVQSRPTTLYPFEKNDLPENFRGVLV-----YDIEKCIGCGACVLACPN 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
             +    GP+     +  +    +   C++CGLC +ACP  A     
Sbjct: 77  NCLYRRPGPKTE-KNKPGIYIAFEPTHCLFCGLCVDACPPVASSLRH 122


>gi|147919461|ref|YP_686799.1| hydrogenase, small subunit-like protein (HycG-like) [uncultured
           methanogenic archaeon RC-I]
 gi|110622195|emb|CAJ37473.1| hydrogenase, small subunit-like protein (HycG-like) [uncultured
           methanogenic archaeon RC-I]
          Length = 247

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 26/129 (20%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
           Y  K   T  YP E      +F G  A+      + +C  C  C A CP+ AI       
Sbjct: 9   YLKKGVVTSKYPAEPFRAPEKFLGMPAI-----DKSKCDRCGKCLAACPSGAINDN---- 59

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNG 145
                     +DI   +CI+C  C + C   AI     +E A++ + +       + ++G
Sbjct: 60  ----------FDISPGRCIFCAACADVC--SAIRMTGEYELASKAKPDF-----DVESSG 102

Query: 146 DRWESEIVR 154
              E +I +
Sbjct: 103 RELEKKIKK 111


>gi|313904891|ref|ZP_07838263.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eubacterium
           cellulosolvens 6]
 gi|313470324|gb|EFR65654.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eubacterium
           cellulosolvens 6]
          Length = 170

 Score = 67.4 bits (163), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 15/112 (13%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            L+  FK   T  YP E      R RG  A+       + CI+C +C+  CP  AI ++ 
Sbjct: 10  ALKNLFKKPVTTTYPAEPAVYPERSRGHVAI-----DVDGCISCGICQLSCPLGAIKVD- 63

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF-EFATETRQE 133
                   ++   +DID   CI CG C E CP   +     + E   E  ++
Sbjct: 64  --------KKEGTWDIDRFDCIACGYCVEKCPKKCLSMVSGYQEPGREKYED 107


>gi|305664296|ref|YP_003860584.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ignisphaera
           aggregans DSM 17230]
 gi|304378865|gb|ADM28704.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ignisphaera
           aggregans DSM 17230]
          Length = 127

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 7/108 (6%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE- 81
            L+   +   TI +P +       FRG+H          +CI C +C   CP+  IT++ 
Sbjct: 7   ALKNLLRRPATIQFPRKPTPVEKDFRGKH-----YADLRKCIGCSICAMECPSNCITMKR 61

Query: 82  -SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
                      R +   I+   C++C  C + CPV+A +   ++  +T
Sbjct: 62  LPEGIKLKHNPRGLYPVIEYNACVFCYRCVKVCPVNAYITTNDYMLST 109


>gi|307265661|ref|ZP_07547214.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919305|gb|EFN49526.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 123

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 48/124 (38%), Gaps = 14/124 (11%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +      +        T  YPFEK     + RG        N  ++CI C +C+ +CP+
Sbjct: 1   MLDMLKNVVSNLTHKPVTRKYPFEKREPFEKARGHI-----KNDIDKCILCGICQRVCPS 55

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
             I            R+   +     +CI CG+C E+CP  ++     +   +  + E+ 
Sbjct: 56  NCI---------QVNRKEGTWAFQPFECIICGVCVESCPTKSLTMAKEYRPISNEKYEIV 106

Query: 136 YDKE 139
             KE
Sbjct: 107 QKKE 110


>gi|317054476|ref|YP_004118501.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pantoea sp. At-9b]
 gi|316952471|gb|ADU71945.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pantoea sp.
           At-9b]
          Length = 181

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 10/104 (9%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T +YP +       FRG+       +  ++CI C  C   CP+ A+++ +         
Sbjct: 14  ATQSYPLQPIDVDANFRGKPE-----HNAQQCIGCAACVNACPSNALSVATDLTAGQ--- 65

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
             + +  ++ +CI+C  C+E CP  AI     FE A   + +  
Sbjct: 66  --LAWTFNLGRCIFCARCEEVCPTAAITLSQQFELAVWNKADFL 107


>gi|218548078|ref|YP_002381869.1| hydrogenase 4 subunit H [Escherichia fergusonii ATCC 35469]
 gi|218355619|emb|CAQ88230.1| Hydrogenase-4 component H [Escherichia fergusonii ATCC 35469]
 gi|324112979|gb|EGC06955.1| 4Fe-4S binding domain-containing protein [Escherichia fergusonii
           B253]
 gi|325496481|gb|EGC94340.1| hydrogenase 4 subunit H [Escherichia fergusonii ECD227]
          Length = 182

 Score = 67.4 bits (163), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 33/144 (22%), Positives = 49/144 (34%), Gaps = 13/144 (9%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +      +R     + T+ YPF     SP FRG+  L                     A
Sbjct: 1   MLKLLKTIMR---AGEATVKYPFAPLEVSPGFRGKPELDAAQCIACA----------ACA 47

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            A    +     D  + T  + + + +CIYCG C+E CP  AI    NFE     + +LY
Sbjct: 48  SACPANALTILTDEQQDTRTWQLFLGRCIYCGRCEEVCPTRAITLSENFELTVTNKADLY 107

Query: 136 YDKERLLNNGDRWESEIVRNIVTD 159
                 L +  +           D
Sbjct: 108 TRATFHLQHCKQCGKPFAAQKSVD 131


>gi|125975498|ref|YP_001039408.1| 4Fe-4S ferredoxin, iron-sulfur binding [Clostridium thermocellum
           ATCC 27405]
 gi|256004214|ref|ZP_05429197.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           thermocellum DSM 2360]
 gi|281419469|ref|ZP_06250483.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           thermocellum JW20]
 gi|125715723|gb|ABN54215.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Clostridium
           thermocellum ATCC 27405]
 gi|255991804|gb|EEU01903.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           thermocellum DSM 2360]
 gi|281406875|gb|EFB37139.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           thermocellum JW20]
 gi|316939618|gb|ADU73652.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Clostridium thermocellum DSM 1313]
          Length = 128

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 32/124 (25%), Positives = 49/124 (39%), Gaps = 15/124 (12%)

Query: 15  EFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP 74
            F       ++  F    T+ YP EK    P  RG   +       + CI C LC   CP
Sbjct: 2   SFFTMTKTLIKSIFHGPYTVRYPLEKKEPFPASRGRIEI-----NIQDCIFCGLCARRCP 56

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF-EFATETRQE 133
             AI +E             R+ I+ ++CI CG C E CP   +     +   + E  ++
Sbjct: 57  TGAINVEKPE---------SRWSINRLRCIQCGYCSEVCPKKCLKMNNMYPAPSFENIED 107

Query: 134 LYYD 137
           +Y +
Sbjct: 108 VYQN 111


>gi|268680486|ref|YP_003304917.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurospirillum deleyianum DSM 6946]
 gi|268618517|gb|ACZ12882.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurospirillum deleyianum DSM 6946]
          Length = 179

 Score = 67.0 bits (162), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 36/115 (31%), Positives = 51/115 (44%), Gaps = 16/115 (13%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T  YPFE    +  FRG+ A          CI C  C   CP+ AIT++         +
Sbjct: 14  ITHKYPFEPYKVAQNFRGKPAYTFD-----LCIGCAACGIACPSNAITVQFNED-----K 63

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGD 146
             + ++ D  +CI+CG C E CP  AI     FE A +      +DK  L+  G+
Sbjct: 64  SKLVWEFDCGRCIFCGRCDEVCPTGAIRLSEEFELAVK------FDKSALIQRGE 112


>gi|309784776|ref|ZP_07679409.1| hydrogenase-4 component H [Shigella dysenteriae 1617]
 gi|308927146|gb|EFP72620.1| hydrogenase-4 component H [Shigella dysenteriae 1617]
          Length = 131

 Score = 66.7 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 43/127 (33%), Gaps = 10/127 (7%)

Query: 27  FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC 86
                 T+ YPF     SP FRG+  L                     A A    +    
Sbjct: 1   MRAGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG----------ACACACPANALTIQ 50

Query: 87  HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGD 146
            D  + +  +   + +CIYCG C+E CP  AI    NFE     + +LY      L    
Sbjct: 51  TDDQQNSRTWQRYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLYTRATFHLQRCS 110

Query: 147 RWESEIV 153
           R E    
Sbjct: 111 RCERPFA 117


>gi|121534187|ref|ZP_01666012.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
 gi|121307290|gb|EAX48207.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
          Length = 165

 Score = 66.7 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 12/117 (10%)

Query: 20  FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79
             + +R  FK  +T  YPF +       RG+          + C+AC++CE +C   AI 
Sbjct: 5   LKIAIRNLFKRPSTDPYPFGETFVPKGLRGKA-----QYNPKACVACRMCEYVCAGGAIQ 59

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
           I          +  + + +    C +CGLC+  CP  AI    ++   T  RQE  Y
Sbjct: 60  I-----REVADKSGLEFILWHNTCTFCGLCEHYCPTKAIRLTEDY--HTTHRQEDKY 109


>gi|120602014|ref|YP_966414.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio vulgaris DP4]
 gi|120562243|gb|ABM27987.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Desulfovibrio vulgaris DP4]
          Length = 211

 Score = 66.7 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 42/112 (37%), Gaps = 10/112 (8%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
             G   +  R   K  +T  +PF +  T  RFRG+  L         C+ C +C  +C  
Sbjct: 1   MFGFLKVLARNVLKGPSTDPFPFAEAHTPARFRGQVRL-----DPALCVGCAICHHVCAG 55

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
            AI I               + +    C  CGLC+  CP  AI    ++  A
Sbjct: 56  GAINIAEREDGSGYD-----FTVWHNTCALCGLCRHYCPTGAITLSNDWHNA 102


>gi|332701740|ref|ZP_08421828.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332551889|gb|EGJ48933.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 140

 Score = 66.7 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 14/112 (12%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80
              L    +  +T  YP          RGE       N  ++CI C  C  +CP+Q IT+
Sbjct: 6   KTALGNLLRKYSTRMYPHVVREPFKDARGEL-----YNEIDKCIFCMKCSKVCPSQCITV 60

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           ++         +   ++ D   C+YCG+C E CPV  +   P +  A   R+
Sbjct: 61  DN---------KAATWECDPFACVYCGVCVENCPVSCLHMKPAYRKAVYDRE 103


>gi|46580694|ref|YP_011502.1| hydrogenase subunit CooX [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46450113|gb|AAS96762.1| hydrogenase, CooX subunit, putative [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311234413|gb|ADP87267.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris RCH1]
          Length = 211

 Score = 66.7 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/112 (25%), Positives = 42/112 (37%), Gaps = 10/112 (8%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
             G   +  R   K  +T  +PF +  T  RFRG+  L         C+ C +C  +C  
Sbjct: 1   MFGFLKVLARNVLKGPSTDPFPFAEAHTPARFRGQVRL-----DPALCVGCAICHHVCAG 55

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
            AI I               + +    C  CGLC+  CP  AI    ++  A
Sbjct: 56  GAINIAEREDGSGYD-----FTVWHNTCALCGLCRHYCPTGAITLSNDWHNA 102


>gi|317153005|ref|YP_004121053.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Desulfovibrio aespoeensis Aspo-2]
 gi|316943256|gb|ADU62307.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 195

 Score = 66.7 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/189 (17%), Positives = 63/189 (33%), Gaps = 35/189 (18%)

Query: 1   MRIFRCNV--SFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKG--STSPRFRGEHALRRY 56
           M   R +V    +     +    +  +YF +   T++YP +         + G   L   
Sbjct: 1   MNALRKHVIQPIIDCWSLLVGLKITGKYFCQPLITVHYPRQVIDDENLSTYGGHVELIGM 60

Query: 57  PNGE--ERCIACKLCEAICPAQAITIESGPRC----------------------HDGTRR 92
           P      +CI+C +C   CP+  + +                              G + 
Sbjct: 61  PKDPATPKCISCMMCVTNCPSNCLKVVKSKPPVTTPEQEQAWKEAEERGEKVTRPKGPKY 120

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEI 152
             ++  D   C  CG C + CP + +    N  +   +R+E++ D   LL        E 
Sbjct: 121 PAKFMYDYTLCSLCGTCIDNCPANTLRFSNNIYWVATSRKEMHID---LLARL----REK 173

Query: 153 VRNIVTDSP 161
             ++   +P
Sbjct: 174 ATDLSAPAP 182


>gi|225164839|ref|ZP_03727063.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutaceae
           bacterium TAV2]
 gi|224800549|gb|EEG18921.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutaceae
           bacterium TAV2]
          Length = 294

 Score = 66.7 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 7/113 (6%)

Query: 29  KAKTTINYPFEKGS-TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI-ESGPRC 86
           +   T+ YP         R  G   +        +C  C  C   CP  AIT   +    
Sbjct: 13  RGCATMAYPDGPAPALPDRHGGALRI-----DPTKCNGCADCAPACPTGAITYSNTNDTG 67

Query: 87  HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139
           +   +R     +D+ +C++C  C EACP  AIV+  +   AT  R +L    +
Sbjct: 68  NRTGQRARLATLDLGRCLFCNECIEACPDGAIVQTGDHRMATRQRDDLILAPD 120


>gi|149194387|ref|ZP_01871484.1| NADH dehydrogenase subunit I [Caminibacter mediatlanticus TB-2]
 gi|149135562|gb|EDM24041.1| NADH dehydrogenase subunit I [Caminibacter mediatlanticus TB-2]
          Length = 190

 Score = 66.7 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 40/101 (39%), Gaps = 10/101 (9%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSP-RFRGEHALRRYPNGEERCIACKLCEAICP 74
            +  F    +  F+   TI YPFE       R+RG          E  CI C  CE +CP
Sbjct: 1   MIKMFIESFKNMFQKPDTIKYPFEPSPPPKGRYRGTIL-----YEESLCIFCDKCENVCP 55

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
             AI  E      D       Y+ +   CIYCG C + CP 
Sbjct: 56  PGAILFE----IVDYETNKREYNYNPYLCIYCGACVDECPK 92


>gi|237729675|ref|ZP_04560156.1| formate hydrogenlyase complex iron-sulfur subunit [Citrobacter sp.
           30_2]
 gi|226908281|gb|EEH94199.1| formate hydrogenlyase complex iron-sulfur subunit [Citrobacter sp.
           30_2]
          Length = 180

 Score = 66.7 bits (161), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 10/103 (9%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
           T +YP E  +    FRG+       +  ++CI C  C   CP+ A+T+E+    +     
Sbjct: 15  TSSYPLEPIAVDKNFRGKPE-----HNPQQCIGCAACVNACPSNALTVETDLVTN----- 64

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            + +  ++ +CI+C  C+E CP  AI     +E A   + +  
Sbjct: 65  ELAWQFNLGRCIFCARCEEVCPTAAIKLSQEYELAVWKKDDFL 107


>gi|118581191|ref|YP_902441.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pelobacter propionicus DSM 2379]
 gi|118581199|ref|YP_902449.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pelobacter propionicus DSM 2379]
 gi|118503901|gb|ABL00384.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pelobacter
           propionicus DSM 2379]
 gi|118503909|gb|ABL00392.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pelobacter
           propionicus DSM 2379]
          Length = 175

 Score = 66.3 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/120 (25%), Positives = 39/120 (32%), Gaps = 11/120 (9%)

Query: 15  EFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP 74
             +             + T+ YPFE      RFRG            +CI C  C     
Sbjct: 2   SILSKLKETAICLNAGRVTMPYPFESKPVPERFRGRPI-----WDHVKCIGCAGCAN--- 53

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134
               + E          R + Y     +C YCG C + CP DAI     FE  T    +L
Sbjct: 54  -NCPSREILINDICQEIRILHY--LGRRCTYCGRCADVCPEDAITMSHEFENGTNKITDL 110


>gi|118474452|ref|YP_891336.1| formate hydrogenlyase complex iron-sulfur subunit [Campylobacter
           fetus subsp. fetus 82-40]
 gi|261885852|ref|ZP_06009891.1| formate hydrogenlyase complex iron-sulfur subunit [Campylobacter
           fetus subsp. venerealis str. Azul-94]
 gi|118413678|gb|ABK82098.1| hydrogenase-4 component H [Campylobacter fetus subsp. fetus 82-40]
          Length = 176

 Score = 66.3 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 16/115 (13%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T  YP+E       FRG+            CI C  C   CP+ AI+++         +
Sbjct: 13  VTSKYPYEPYIVEEHFRGKP-----TYHYTNCIGCAACGVACPSNAISVKWED-----GK 62

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGD 146
           + +++  +  +CI+CG C E CP  AI    ++E   +      +DK  L+  G+
Sbjct: 63  KFIKWRYNCGRCIFCGRCDEVCPTAAIRLSNDYELTVK------FDKSALIQEGE 111


>gi|220904047|ref|YP_002479359.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219868346|gb|ACL48681.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 254

 Score = 66.3 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 12/118 (10%)

Query: 19  AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78
              +      +   T++YP ++ + SPR+ G  +L         C  C+ C A CP  A+
Sbjct: 1   MLRIIKERIHQKYRTLDYPHQQPTLSPRYMGRPSLI-----PVDCGDCRACYAACPTAAL 55

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
               G              +DM +C +CG C+ ACP  AI        A   R++L  
Sbjct: 56  LPTEGVPGSTP-------TLDMGRCTFCGACRAACPKQAITFTGEHRMAAFRREDLLI 106


>gi|124485782|ref|YP_001030398.1| NADH-plastoquinone oxidoreductase subunit [Methanocorpusculum
           labreanum Z]
 gi|124363323|gb|ABN07131.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methanocorpusculum labreanum Z]
          Length = 146

 Score = 66.3 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 33/138 (23%), Positives = 42/138 (30%), Gaps = 22/138 (15%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGS-----------------TSPRFRGEHALRRYPN 58
                   L    K   T  +P  +                     P         +   
Sbjct: 1   MFPMLKEILAQSVKKPVTNLFPAARLPKTITGFLGQVGEGKAALIPPVETPSAMRGKLLY 60

Query: 59  GEERCIACKLCEAICPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
               C  C LC  +CPA AI              D  R   R  I +  CI+CG C + C
Sbjct: 61  DRNLCNGCGLCMKVCPAHAIEQVVYPVPPAKDAEDKPRAQKRVRIYVGNCIFCGQCIDIC 120

Query: 114 PVDAIVEGPNFEFATETR 131
           P  AI + P+F  ATE R
Sbjct: 121 PKGAISQSPDFLLATEDR 138


>gi|225629759|ref|ZP_03787707.1| NADH dehydrogenase I, I subunit [Wolbachia endosymbiont of
          Muscidifurax uniraptor]
 gi|225591388|gb|EEH12480.1| NADH dehydrogenase I, I subunit [Wolbachia endosymbiont of
          Muscidifurax uniraptor]
          Length = 75

 Score = 66.3 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/65 (56%), Positives = 44/65 (67%)

Query: 3  IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62
          + +    +    E +  F + L+Y FK K T+ YP EKG  SPRFRGEHALRRYPNGEER
Sbjct: 10 MLKKLAWYWSFVELIKGFVITLKYMFKPKVTLRYPMEKGPLSPRFRGEHALRRYPNGEER 69

Query: 63 CIACK 67
          CIACK
Sbjct: 70 CIACK 74


>gi|289578798|ref|YP_003477425.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter italicus Ab9]
 gi|297545019|ref|YP_003677321.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|289528511|gb|ADD02863.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter italicus Ab9]
 gi|296842794|gb|ADH61310.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 123

 Score = 66.3 bits (160), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 14/124 (11%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +      L        T  YPFEK     R RG        N  ++CI C +C+ +CP+
Sbjct: 1   MLDMLKNVLSNLIHKPVTRKYPFEKREPFERARGHI-----KNDIDKCILCGICQRVCPS 55

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
             I            R+  ++     +C+ CG C E CP  ++     +   +  + E+ 
Sbjct: 56  NCI---------QVNRKEGKWVFQPFECVICGACVENCPTKSLKMEAEYRAVSNEKYEIV 106

Query: 136 YDKE 139
           + KE
Sbjct: 107 HKKE 110


>gi|218888274|ref|YP_002437595.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218759228|gb|ACL10127.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 229

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 10/112 (8%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +G   +  R   +  +T  +PF +  T  RFRG+  +        +C+ C +C  +C  
Sbjct: 1   MLGFLKILARNVAQGPSTDPFPFAETHTPSRFRGKVTM-----DPAKCVGCAICRHVCAG 55

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
            AI IE              + +    C  CGLC+  CP  AI    ++  A
Sbjct: 56  GAIRIEPREDRSGYD-----FTVWHNTCALCGLCRHYCPTGAITMTNDWHNA 102


>gi|148262959|ref|YP_001229665.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Geobacter
           uraniireducens Rf4]
 gi|146396459|gb|ABQ25092.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Geobacter
           uraniireducens Rf4]
          Length = 263

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/119 (30%), Positives = 47/119 (39%), Gaps = 7/119 (5%)

Query: 19  AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78
            F   L    +   TI YP E       FRG   L            C+LC   CP  AI
Sbjct: 1   MFKAILARIHQKHRTIKYPAEPAVLPELFRGYPLLNPDACPSG----CRLCADACPFGAI 56

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
           T  +G     GT + +  D+   KC++C  C EACP  AI    + + A   R +L   
Sbjct: 57  TTGNGE-LETGTGKNLSLDM--GKCLFCPECAEACPHGAISFSCDEKLAATHRADLIVT 112


>gi|167951303|ref|ZP_02538377.1| NADH dehydrogenase subunit I [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 49

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 16/47 (34%), Positives = 29/47 (61%)

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           AIVE   +E+  E R++    K++LL  GD++E+++  +I   + YR
Sbjct: 3   AIVETRIYEYHFENREDAVMTKQKLLALGDKYEAQLAADIEAQARYR 49


>gi|220930726|ref|YP_002507635.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           cellulolyticum H10]
 gi|220001054|gb|ACL77655.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           cellulolyticum H10]
          Length = 124

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 44/118 (37%), Gaps = 13/118 (11%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                    +       T  YPFEK       RG+          E+CI C +C+  CPA
Sbjct: 1   MFKMMENIFKNLTSKPATRMYPFEKREPFKDSRGQIE----GIEIEKCIFCSICQRKCPA 56

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
            AI +    +          ++I+  KC+ C +C E CP   IV     + A   ++ 
Sbjct: 57  NAIVVNKAEKS---------WEINQFKCVICNVCVEVCPKKCIVASSEHKTAQAKKEN 105


>gi|289805382|ref|ZP_06536011.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 79

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 22/40 (55%), Positives = 27/40 (67%)

Query: 106 CGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNG 145
           CGLC+EACP  AI   P+FE     RQ+L Y+KE LL +G
Sbjct: 1   CGLCEEACPTTAIQLTPDFELGEYKRQDLVYEKEDLLISG 40


>gi|289522407|ref|ZP_06439261.1| NAD(P)H-quinone oxidoreductase subunit I (NAD(P)Hdehydrogenase I
           subunit I) [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289504243|gb|EFD25407.1| NAD(P)H-quinone oxidoreductase subunit I (NAD(P)Hdehydrogenase I
           subunit I) [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 134

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/140 (22%), Positives = 52/140 (37%), Gaps = 36/140 (25%)

Query: 18  GAFFLCLRYFFKAKTTINYPFE----------------------KGSTSPRFRGEHALRR 55
              F+ ++ FFK   T  +P                           T   FRG  A   
Sbjct: 4   KMLFINIKQFFKKPFTNLFPLAHIPDHLLAVLKRVKSGEAKLNPPVPTPEGFRGRIA--- 60

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
               +++CI C+LC  +CPA AI+  +  +         +  + + +C +C  C E CPV
Sbjct: 61  --YDKDKCIGCRLCVRVCPANAISYITEEK---------KIMVHVDRCCFCAQCTEICPV 109

Query: 116 DAIVEGPNFEFATETRQELY 135
             +     F  A+  R+E  
Sbjct: 110 QCLSMSNEFLLASYNRKEQV 129


>gi|224372679|ref|YP_002607051.1| NADH-ubiquinone oxidoreductase 23 kda subunit [Nautilia
           profundicola AmH]
 gi|223589224|gb|ACM92960.1| NADH-ubiquinone oxidoreductase 23 kda subunit [Nautilia
           profundicola AmH]
          Length = 168

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 32/100 (32%), Positives = 39/100 (39%), Gaps = 9/100 (9%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +  F   L+       TI YPF        +RG          EE CI C  CE ICP 
Sbjct: 1   MIQMFIESLKNLVSKPETIKYPFAPSPEPKGYRGTIL-----YNEELCIFCDKCENICPP 55

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
            AI  E             +Y+ +   CIYCG C +ACP 
Sbjct: 56  GAIKFEVVDIESGK----KQYNYNPYLCIYCGACVDACPK 91


>gi|157148258|ref|YP_001455577.1| formate hydrogenlyase complex iron-sulfur subunit [Citrobacter
           koseri ATCC BAA-895]
 gi|157085463|gb|ABV15141.1| hypothetical protein CKO_04075 [Citrobacter koseri ATCC BAA-895]
          Length = 180

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 30/128 (23%), Positives = 50/128 (39%), Gaps = 10/128 (7%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
           T +YP E  +    FRG+       +  ++CI C  C   CP+ A+T+E+          
Sbjct: 15  TSSYPLEPIAVDKNFRGKPE-----HNPQQCIGCAACVNACPSNALTVETCLVTG----- 64

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEI 152
            + +  ++ +CI+C  C+E CP  AI     +E A   + +        L N        
Sbjct: 65  ELAWQFNLGRCIFCARCEEVCPTAAIKLSQEYELAVWKKADFLQQSRFTLCNCRVCNRPF 124

Query: 153 VRNIVTDS 160
                 D 
Sbjct: 125 AVQKEIDY 132


>gi|78221590|ref|YP_383337.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Geobacter
           metallireducens GS-15]
 gi|78192845|gb|ABB30612.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Geobacter
           metallireducens GS-15]
          Length = 262

 Score = 65.9 bits (159), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/117 (29%), Positives = 44/117 (37%), Gaps = 13/117 (11%)

Query: 24  LRYFFKAKT----TINYPFEKGSTSPRFRGEHALRRYPNGEERCIA-CKLCEAICPAQAI 78
           L+  F  +     TI YP         FRG   L       E C   C  C   CP  AI
Sbjct: 2   LKALFARRHQGHRTIAYPAGPAQLPELFRGAPFL-----DPEMCPGGCADCANACPHGAI 56

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
           T  +G     G        +DM KC++C  C  ACP  AI    +   A   R++L 
Sbjct: 57  TAGTG---DQGPGTGKTLALDMGKCLFCPECAGACPHGAISFTGDHRLAVNRREDLI 110


>gi|154174847|ref|YP_001407624.1| formate hydrogenlyase complex iron-sulfur subunit [Campylobacter
           curvus 525.92]
 gi|112802292|gb|EAT99636.1| hydrogenase-4 component H [Campylobacter curvus 525.92]
          Length = 179

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 19/131 (14%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +  F +  +Y    K T  YPFE       FRG+          E CI C  C   CP+
Sbjct: 1   MMKLFDITEKY---GKATYAYPFEPYIVPENFRGQP-----NYTYELCIGCAACGIACPS 52

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            AI ++            + ++ D  +CI+CG C E CP  A+    +FE A +      
Sbjct: 53  NAIELKMNETQDR-----LVWEFDCGRCIFCGRCDEVCPTGAVRLSDSFELAVK------ 101

Query: 136 YDKERLLNNGD 146
           +DK  L+  G+
Sbjct: 102 FDKSALIQRGE 112


>gi|213859376|ref|ZP_03385080.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 100

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 8/101 (7%)

Query: 11  LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           + LKE +  F   +R       + F  + T  YP E     PR+RG   L R P+GEERC
Sbjct: 1   MTLKELLVGFGTQVRSIWMIGLHAFAKRETRMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
           +AC LC   CP   I+++      DG      + I+  +CI
Sbjct: 61  VACNLCAVACPVGCISLQKAE-TKDGRWYPEFFRINFSRCI 100


>gi|83592759|ref|YP_426511.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodospirillum rubrum ATCC
           11170]
 gi|1515469|gb|AAC45119.1| CooX [Rhodospirillum rubrum]
 gi|83575673|gb|ABC22224.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodospirillum rubrum ATCC
           11170]
          Length = 166

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 12/108 (11%)

Query: 20  FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79
             + ++   K  +T   P     T   +RG+         E  C+ CK+CE +CP  AI 
Sbjct: 4   LSILMKNLLKGPSTEPLPTADSPTPAAYRGKVTF-----DETACVGCKMCEHVCPGGAIR 58

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
            E  P         +R+ I    C+ CGLC   C   AI    ++  +
Sbjct: 59  FEERPEG-------LRFMIWHNTCVNCGLCSHYCLTKAIKLSNDWHLS 99


>gi|323698259|ref|ZP_08110171.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. ND132]
 gi|323458191|gb|EGB14056.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           desulfuricans ND132]
          Length = 195

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 57/165 (34%), Gaps = 28/165 (16%)

Query: 1   MRIFRCNV--SFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKG--STSPRFRGEHALRRY 56
           M  F+ NV    L     +    +  +YF +   T++YP E         + G   L   
Sbjct: 1   MGKFKENVIQPILDCWSLIVGLKITGKYFCQPLVTVHYPREVIDDENLRTYGGHVELIGK 60

Query: 57  PNGE--ERCIACKLCEAICPAQAITIESGP----------------------RCHDGTRR 92
           P      +CI+C +C   CP++ +T+                                + 
Sbjct: 61  PKDPATPKCISCMMCVTNCPSKCLTVVKSKPPKLTAEEEAAMKAAEEAGEKVNKPKAPKN 120

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
             ++  D   C  CG C E CP  ++    +  +   +R+E+  D
Sbjct: 121 PAKFIYDYTLCSLCGTCIENCPAKSLRFSNDIYWVATSRKEMKLD 165


>gi|297616849|ref|YP_003702008.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297144686|gb|ADI01443.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 120

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 41/120 (34%), Gaps = 15/120 (12%)

Query: 19  AFFL-CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA 77
              +   +  F    T  YP++        RG   L       ++CI C  CE  CPA A
Sbjct: 3   GMLIQVFKNLFSRPATRGYPYQPREPFRAARGTLML-----DIDKCIVCGACEKACPAGA 57

Query: 78  ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
           I ++              Y  D   CI CG C EACP         +       + + ++
Sbjct: 58  IEVKPKEHL---------YKYDPYSCIVCGNCVEACPTGCFEITSEWRKPVTEMRTMVWE 108


>gi|15898912|ref|NP_343517.1| pyruvate synthase delta chain (Pyruvic-ferredoxin oxidoreductase
           delta chain) (porD-like) [Sulfolobus solfataricus P2]
 gi|284173031|ref|ZP_06387000.1| pyruvate synthase delta chain (Pyruvic-ferredoxin oxidoreductase
           delta chain) (porD-like) protein [Sulfolobus
           solfataricus 98/2]
 gi|1707734|emb|CAA69454.1| orf c01004 [Sulfolobus solfataricus P2]
 gi|13815423|gb|AAK42307.1| Pyruvate synthase delta chain (Pyruvic-ferredoxin oxidoreductase
           delta chain) (porD-like) [Sulfolobus solfataricus P2]
 gi|261603331|gb|ACX92934.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus solfataricus 98/2]
          Length = 363

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 45/138 (32%), Gaps = 14/138 (10%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
           L  +   +       P  K +   + RG     R     + CI CKLC   CP +     
Sbjct: 230 LTWQEMLEGTVIPAVPRGKRNELFK-RGTTKFERPTVDFDTCIKCKLCWVYCPDECFDET 288

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DAIVEGPNFEFATETRQELYYDKER 140
                         YDI    C+ CG+C E CPV D IV      F    R    + +++
Sbjct: 289 PDG----------YYDIAYDYCVGCGICAEVCPVKDCIVMVDESMFTDYRRPYEMWKEDK 338

Query: 141 LLNNGDRWESEIVRNIVT 158
                  W   + +    
Sbjct: 339 --AKYKEWLKTVRQARKE 354


>gi|323700403|ref|ZP_08112315.1| hypothetical protein DND132_2997 [Desulfovibrio sp. ND132]
 gi|323460335|gb|EGB16200.1| hypothetical protein DND132_2997 [Desulfovibrio desulfuricans
           ND132]
          Length = 166

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 14/104 (13%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80
              ++   +   T  YP+E     P +RGE  +        +CI C  C   CP+Q IT+
Sbjct: 5   STVIKNLLRKPATRKYPYEVRDPFPNYRGELVI-----DINKCIFCGTCSRKCPSQCITV 59

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           +              +  D   C+YCG+C+++CP  ++      
Sbjct: 60  DKDA---------GTWQCDPYACVYCGICRDSCPTKSLSMKDVH 94


>gi|291519866|emb|CBK75087.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
           kD subunit (chain I) [Butyrivibrio fibrisolvens 16/4]
          Length = 134

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 39/102 (38%), Gaps = 14/102 (13%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            ++  F    T  YPF       R RG   + +       CI C +C   CP  AIT++ 
Sbjct: 11  VIKNLFSEPATTQYPFVPREYPERTRGHIDINKD-----SCILCGMCMRSCPPGAITVD- 64

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
                   R    + I+   CI CG C E CP   +   P +
Sbjct: 65  --------RVGKTWSINRFDCIQCGYCAEKCPKKCLSITPGY 98


>gi|16303247|dbj|BAB70482.1| pyruvate:ferredoxin oxidoreductase delta subunit [Sulfolobus
           solfataricus]
          Length = 363

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 31/138 (22%), Positives = 45/138 (32%), Gaps = 14/138 (10%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
           L  +   +       P  K +   + RG     R     + CI CKLC   CP +     
Sbjct: 230 LTWQEMLEGTVIPAVPRGKRNELFK-RGTTKFERPTVDFDTCIECKLCWVYCPDECFDGT 288

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DAIVEGPNFEFATETRQELYYDKER 140
                         YDI    C+ CG+C E CPV D IV      F    R    + +++
Sbjct: 289 PDG----------YYDIAYDYCVGCGICAEVCPVKDCIVMVDESMFTDYRRPYEMWKEDK 338

Query: 141 LLNNGDRWESEIVRNIVT 158
                  W   + +    
Sbjct: 339 --AKYKEWLKTVRQARKE 354


>gi|296272276|ref|YP_003654907.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Arcobacter nitrofigilis DSM 7299]
 gi|296096451|gb|ADG92401.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Arcobacter
           nitrofigilis DSM 7299]
          Length = 178

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/116 (31%), Positives = 50/116 (43%), Gaps = 16/116 (13%)

Query: 31  KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT 90
           K T  YP E    S  FRG+          E CI C  C   CP+ AI ++         
Sbjct: 12  KATYKYPLEPYEVSEGFRGKP-----SYTYENCIGCTACGVACPSNAINVKLNED----- 61

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGD 146
           +  + ++ D  +CI+CG C E CP  AIV    FE A +      +DK  L   G+
Sbjct: 62  KTKLVWEFDAARCIFCGRCDEVCPTGAIVLSQEFELAVK------FDKNNLKERGE 111


>gi|256827156|ref|YP_003151115.1| NADH:ubiquinone oxidoreductase chain I-like protein
           [Cryptobacterium curtum DSM 15641]
 gi|256583299|gb|ACU94433.1| NADH:ubiquinone oxidoreductase chain I-like protein
           [Cryptobacterium curtum DSM 15641]
          Length = 144

 Score = 65.1 bits (157), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 14/104 (13%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80
            + LR  F    T+ YP E        +G  A     N  + CI C +C+ +CP+ AI +
Sbjct: 8   KMTLRSLFTKPETLLYPTEVKPAYLNLKGHIA-----NRIDECILCGMCQRVCPSDAIVV 62

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           E         ++   + ID  +C+ C  C  ACP  ++   P +
Sbjct: 63  E---------KKNGTWSIDHFRCVQCSACVRACPTSSLSMEPEY 97


>gi|145592473|ref|YP_001154475.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit [Pyrobaculum
           arsenaticum DSM 13514]
 gi|145284241|gb|ABP51823.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit [Pyrobaculum
           arsenaticum DSM 13514]
          Length = 312

 Score = 64.7 bits (156), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 28/77 (36%), Gaps = 2/77 (2%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--TVRYDIDMIKCIYC 106
           G   + +      +CI C+ C   CP  AI      R     R+      D D   C  C
Sbjct: 235 GGWRIDKPVIDHSKCIMCRKCWLYCPDDAIIEAWVEREGPRGRKFRMKMIDFDYQYCKGC 294

Query: 107 GLCQEACPVDAIVEGPN 123
           G+C E CP  AI     
Sbjct: 295 GVCAEVCPTGAIQMVRE 311



 Score = 35.1 bits (79), Expect = 3.1,   Method: Composition-based stats.
 Identities = 18/46 (39%), Positives = 21/46 (45%)

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           A A+   S      G  R  +  ID  KCI C  C   CP DAI+E
Sbjct: 221 AGAVFPGSSFPYATGGWRIDKPVIDHSKCIMCRKCWLYCPDDAIIE 266


>gi|229583141|ref|YP_002841540.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus Y.N.15.51]
 gi|228013857|gb|ACP49618.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus Y.N.15.51]
          Length = 363

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 49/143 (34%), Gaps = 18/143 (12%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
           L      +       P  K +   + RG     R     + CI CKLC   CP +     
Sbjct: 230 LTWHEMLEGTVIPAVPRGKRNELFK-RGTTKFERPTVDFDTCIKCKLCWIYCPDECFDET 288

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DAIVEGPNFEFATETRQELYYDKER 140
                         YDI    C+ CG+C + CPV D IV      F    R    Y+  +
Sbjct: 289 PDG----------YYDIAYDYCVGCGICADVCPVKDCIVMVDESMFTDYRRP---YEMWK 335

Query: 141 LLNNGDRWESEIVRNIVTDSPYR 163
              N  ++  E ++N+      R
Sbjct: 336 --ENKAKY-KEWLKNVRQARKER 355


>gi|139439380|ref|ZP_01772821.1| Hypothetical protein COLAER_01840 [Collinsella aerofaciens ATCC
           25986]
 gi|133775159|gb|EBA38979.1| Hypothetical protein COLAER_01840 [Collinsella aerofaciens ATCC
           25986]
          Length = 113

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 14/100 (14%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80
              L    K   T+ YP EK +   R RG        N  + CI C +C   CPA A+ +
Sbjct: 8   KTALGSMVKQPVTVCYPQEKLAAPERLRGHIV-----NDMDVCICCGMCARRCPAGALAV 62

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           +         R+   + ID   C+ CG C E+CP   +  
Sbjct: 63  D---------RKGGTWSIDPYACVVCGECIESCPKHCLTM 93


>gi|306486048|gb|ADM92671.1| NADH-plastoquinone oxidoreductase subunit I [Franklinia alatamaha]
          Length = 113

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 5/96 (5%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQSFIITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
               ++         +R + Y ID   CI+CG C E
Sbjct: 77  DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVE 112


>gi|239905427|ref|YP_002952166.1| putative hydrogenase-4 component I [Desulfovibrio magneticus RS-1]
 gi|239795291|dbj|BAH74280.1| putative hydrogenase-4 component I [Desulfovibrio magneticus RS-1]
          Length = 258

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 43/118 (36%), Gaps = 15/118 (12%)

Query: 19  AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78
              + L    + K T+ +P      SPRFRG   L   P  E     C  C   CP  A+
Sbjct: 1   MLNILLERLRQGKRTVAFPAAMPPLSPRFRGLPVLADSPCAEG----CASCAGACPTGAL 56

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
             +                +D+ +CI CG C E CP   +    +   A+ TR  L  
Sbjct: 57  GADEDG-----------LYLDLGRCILCGTCAELCPGRRVSFSRDHRLASSTRDGLVL 103


>gi|229087783|ref|ZP_04219905.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus Rock3-44]
 gi|228695542|gb|EEL48405.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus Rock3-44]
          Length = 77

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 36/74 (48%)

Query: 78  ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
           +T +  P      +    YDI+   CI C LC E CP +AIV   NFE A  TR +L+ +
Sbjct: 1   MTGKKHPDPTKKGKIIDTYDINFEICILCDLCTEVCPTEAIVMTNNFELAEYTRDDLFKN 60

Query: 138 KERLLNNGDRWESE 151
            + L  N +    E
Sbjct: 61  LQWLDENDENVRKE 74


>gi|227829378|ref|YP_002831157.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus L.S.2.15]
 gi|229578177|ref|YP_002836575.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus Y.G.57.14]
 gi|284996746|ref|YP_003418513.1| hypothetical protein LD85_0352 [Sulfolobus islandicus L.D.8.5]
 gi|227455825|gb|ACP34512.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus L.S.2.15]
 gi|228008891|gb|ACP44653.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus Y.G.57.14]
 gi|284444641|gb|ADB86143.1| hypothetical protein LD85_0352 [Sulfolobus islandicus L.D.8.5]
          Length = 363

 Score = 64.3 bits (155), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 49/143 (34%), Gaps = 18/143 (12%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
           L      +       P  K +   + RG     R     + CI CKLC   CP +     
Sbjct: 230 LTWHEMLEGTVIPAVPRGKRNELFK-RGTTKFERPTVDFDTCIKCKLCWIYCPDECFDET 288

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DAIVEGPNFEFATETRQELYYDKER 140
                         YDI    C+ CG+C + CPV D IV      F    R    Y+  +
Sbjct: 289 PDG----------YYDIAYDYCVGCGICADVCPVKDCIVMVDESMFTDYRRP---YEMWK 335

Query: 141 LLNNGDRWESEIVRNIVTDSPYR 163
              N  ++  E ++N+      R
Sbjct: 336 --ENKAKY-KEWLKNVRQARKER 355


>gi|119871838|ref|YP_929845.1| pyruvate ferredoxin oxidoreductase subunit gamma/delta [Pyrobaculum
           islandicum DSM 4184]
 gi|119673246|gb|ABL87502.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit [Pyrobaculum
           islandicum DSM 4184]
          Length = 312

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 28/77 (36%), Gaps = 2/77 (2%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR--RTVRYDIDMIKCIYC 106
           G   + +      +CI C+ C   CP  AI            R  RT   D D   C  C
Sbjct: 235 GGWRIEKPIIDHSKCIMCRKCWLYCPDDAIIEAWREAPGPRGRVFRTKVIDFDYQYCKGC 294

Query: 107 GLCQEACPVDAIVEGPN 123
           G+C E CP  AI     
Sbjct: 295 GICAEVCPTGAIQMVRE 311


>gi|323476480|gb|ADX81718.1| pyruvate ferredoxin, flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus HVE10/4]
          Length = 363

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 50/143 (34%), Gaps = 18/143 (12%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
           L  +   +       P  K +   + RG     R     + CI CKLC   CP +     
Sbjct: 230 LTWQEMLEGTVIPAVPRGKRNELFK-RGTTKFERPTVDFDTCIKCKLCWIYCPDECFDET 288

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DAIVEGPNFEFATETRQELYYDKER 140
                         YDI    C+ CG+C + CPV D IV      F    R    Y+  +
Sbjct: 289 PDG----------YYDIAYDYCVGCGICADVCPVKDCIVMVDESMFTDYRRP---YEMWK 335

Query: 141 LLNNGDRWESEIVRNIVTDSPYR 163
              N  ++  E ++N+      R
Sbjct: 336 --ENKAKY-KEWLKNVRQARKER 355


>gi|222529079|ref|YP_002572961.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Caldicellulosiruptor bescii DSM 6725]
 gi|312127859|ref|YP_003992733.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Caldicellulosiruptor hydrothermalis 108]
 gi|222455926|gb|ACM60188.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Caldicellulosiruptor bescii DSM 6725]
 gi|311777878|gb|ADQ07364.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 126

 Score = 64.3 bits (155), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 50/125 (40%), Gaps = 15/125 (12%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
             G     L   F    T  YP EK       RG   +       E+CI C +C+  CP+
Sbjct: 1   MFGMLKNVLDNLFSKPATRLYPKEKRPFFKDTRGSLEI-----EIEKCIFCGICQRKCPS 55

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            AI ++         R +  + ++  KC+ C +C E+CP   ++    F   T  ++  Y
Sbjct: 56  NAIVVD---------RNSRTWQLNQYKCVLCNVCVESCPKKCLISKEQFNVPTTYKE-FY 105

Query: 136 YDKER 140
             K+ 
Sbjct: 106 IKKQE 110


>gi|323473828|gb|ADX84434.1| pyruvate ferredoxin, flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus REY15A]
          Length = 363

 Score = 64.0 bits (154), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 50/143 (34%), Gaps = 18/143 (12%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
           L  +   +       P  K +   + RG     R     + CI CKLC   CP +     
Sbjct: 230 LTWQEMLEGTVIPAVPRGKRNELFK-RGTTKFERPTVDFDTCIKCKLCWIYCPDECFDET 288

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DAIVEGPNFEFATETRQELYYDKER 140
                         YDI    C+ CG+C + CPV D IV      F    R    Y+  +
Sbjct: 289 PDG----------YYDIAYDYCVGCGICADVCPVKDCIVMVDESMFTDYRRP---YEMWK 335

Query: 141 LLNNGDRWESEIVRNIVTDSPYR 163
              N  ++  E ++N+      R
Sbjct: 336 --ENKAKY-KEWLKNVRQARKER 355


>gi|227826744|ref|YP_002828523.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus M.14.25]
 gi|229583908|ref|YP_002842409.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus M.16.27]
 gi|238618839|ref|YP_002913664.1| pyruvate ferredoxin, flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus M.16.4]
 gi|227458539|gb|ACP37225.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus M.14.25]
 gi|228018957|gb|ACP54364.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus M.16.27]
 gi|238379908|gb|ACR40996.1| pyruvate ferredoxin, flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus M.16.4]
          Length = 363

 Score = 64.0 bits (154), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 34/143 (23%), Positives = 50/143 (34%), Gaps = 18/143 (12%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
           L  +   +       P  K +   + RG     R     + CI CKLC   CP +     
Sbjct: 230 LTWQEMLEGTVIPAVPRGKRNELFK-RGTTKFERPTVDFDTCIKCKLCWIYCPDECFDET 288

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DAIVEGPNFEFATETRQELYYDKER 140
                         YDI    C+ CG+C + CPV D IV      F    R    Y+  +
Sbjct: 289 PDG----------YYDIAYDYCVGCGICADVCPVKDCIVMVDESMFTDYRRP---YEMWK 335

Query: 141 LLNNGDRWESEIVRNIVTDSPYR 163
              N  ++  E ++N+      R
Sbjct: 336 --ENKAKY-KEWLKNVRQARKER 355


>gi|312134934|ref|YP_004002272.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Caldicellulosiruptor owensensis OL]
 gi|311774985|gb|ADQ04472.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Caldicellulosiruptor owensensis OL]
          Length = 126

 Score = 64.0 bits (154), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 50/125 (40%), Gaps = 15/125 (12%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
             G     L   F    T  YP EK       RG   +       E+CI C +C+  CP+
Sbjct: 1   MFGMLRNVLDNLFSKPATRLYPKEKRPFFKDTRGSLEI-----EIEKCIFCGICQRKCPS 55

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            AI ++         R +  + ++  KCI C +C E+CP   ++    F   T  ++  Y
Sbjct: 56  NAIVVD---------RNSRTWQLNQYKCILCNVCVESCPKKCLISKEQFNVPTTYKE-FY 105

Query: 136 YDKER 140
             K+ 
Sbjct: 106 IKKQE 110


>gi|146296552|ref|YP_001180323.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410128|gb|ABP67132.1| ech hydrogenase subunit F [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 127

 Score = 64.0 bits (154), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 14/117 (11%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
             G     L   F    T  YP EK       RG   +        +CI C +C+  CPA
Sbjct: 1   MFGMLQNVLNNLFSKPATRLYPKEKRPFFKGTRGSLEIEID-----KCIFCGICQRKCPA 55

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
            AIT++         R    + ++  KC+ C +C E+CP   ++    F   T  ++
Sbjct: 56  NAITVD---------RNAKMWQLNQYKCVLCNVCVESCPKKCLISKEQFNLPTTYKE 103


>gi|302404533|ref|XP_003000104.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Verticillium
           albo-atrum VaMs.102]
 gi|261361286|gb|EEY23714.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Verticillium
           albo-atrum VaMs.102]
          Length = 149

 Score = 64.0 bits (154), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 26/56 (46%), Positives = 31/56 (55%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYP 57
                   +  L E     ++ +  FF+   TI YPFEKG  SPRFRGEHALRRYP
Sbjct: 58  STLDRMGRYFLLTEMFRGMYVLMEQFFRPPYTIFYPFEKGPISPRFRGEHALRRYP 113


>gi|315427007|dbj|BAJ48625.1| hypothetical protein HGMM_F30C12C43 [Candidatus Caldiarchaeum
           subterraneum]
 gi|315427014|dbj|BAJ48631.1| hypothetical protein HGMM_F12C01C05 [Candidatus Caldiarchaeum
           subterraneum]
 gi|315428095|dbj|BAJ49682.1| hypothetical protein HGMM_F21D07C32 [Candidatus Caldiarchaeum
           subterraneum]
          Length = 302

 Score = 64.0 bits (154), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 31/59 (52%)

Query: 89  GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDR 147
             +++    +D  +C++CG C +ACP  A+   P  E +   R+ L+Y  ++L   G R
Sbjct: 226 HNKKSYFPAVDYGRCVFCGFCVDACPFYALEMTPEIELSDTDRRSLFYSPKKLAKPGVR 284



 Score = 40.5 bits (93), Expect = 0.072,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 27/77 (35%), Gaps = 20/77 (25%)

Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKG---------------STSPRFRGEHALRRYPNGE 60
           V    + L++ F    TI YP+EK                   P F+G H L       
Sbjct: 9  IVKPMIVALKHVFMPTVTIKYPYEKIINTTGENYRYDPKASIAYPGFKGRHILYLD---- 64

Query: 61 ERCIACKLCEAICPAQA 77
           +C  C LC+  C   A
Sbjct: 65 -KCTGCSLCDIACQNVA 80


>gi|302872078|ref|YP_003840714.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574937|gb|ADL42728.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 126

 Score = 64.0 bits (154), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 50/125 (40%), Gaps = 15/125 (12%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
             G     L   F    T  YP EK       RG   +       E+CI C +C+  CP+
Sbjct: 1   MFGMLRNVLDNLFSKPVTRLYPKEKRPFFKDTRGSLEI-----EIEKCIFCGICQRKCPS 55

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            AI ++         R +  + ++  KC+ C +C E+CP   ++    F   T  ++  Y
Sbjct: 56  NAIVVD---------RNSRTWQLNQYKCVLCNVCVESCPKKCLISKEQFNVPTTYKE-FY 105

Query: 136 YDKER 140
             K+ 
Sbjct: 106 IKKQE 110


>gi|41033705|emb|CAF18519.1| 2-oxoglutarate synthase, 2-oxoacid-ferredoxin oxidoreductase CD
           subunit [Thermoproteus tenax]
          Length = 311

 Score = 64.0 bits (154), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 25/77 (32%), Gaps = 2/77 (2%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAI--TIESGPRCHDGTRRTVRYDIDMIKCIYC 106
           G   + +      +CI C+ C   CP  A+               R    D     C  C
Sbjct: 234 GSWRVEKPIIDHSKCIMCRKCWMFCPDDAVLEVWRETKLPSGRVVRVKAIDFSYEYCKGC 293

Query: 107 GLCQEACPVDAIVEGPN 123
           G+C + CP  AI     
Sbjct: 294 GICADVCPTGAIQMVRE 310


>gi|283853523|ref|ZP_06370764.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio sp.
           FW1012B]
 gi|283571104|gb|EFC19123.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio sp.
           FW1012B]
          Length = 253

 Score = 64.0 bits (154), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 28/119 (23%), Positives = 43/119 (36%), Gaps = 17/119 (14%)

Query: 19  AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC-IACKLCEAICPAQA 77
              +      + + T+ +P       PRFRG   L         C   C  C   CP  A
Sbjct: 1   MLHILAERLRQGRRTVAFPKNVPDLPPRFRGLPVL-----SPGPCATDCASCAGTCPTGA 55

Query: 78  ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
           +  +                +D+ KCI+CG C  ACP   +    +   A++TR+ L  
Sbjct: 56  LGADEAGLF-----------LDLGKCIFCGTCATACPAGRVAFSQDHRLASDTREGLVL 103


>gi|312622665|ref|YP_004024278.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312203132|gb|ADQ46459.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 126

 Score = 63.6 bits (153), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 31/125 (24%), Positives = 50/125 (40%), Gaps = 15/125 (12%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
             G     L   F    T  YP EK       RG   +       E+CI C +C+  CP+
Sbjct: 1   MFGMLKNVLDNLFSKPATRLYPKEKRPFFKDTRGSLEI-----EIEKCIFCGICQRKCPS 55

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            AI ++         R +  + ++  KC+ C +C E+CP   ++    F   T  ++  Y
Sbjct: 56  NAIIVD---------RNSRTWQLNQYKCVLCNVCVESCPKKCLISKEQFNVPTTYKE-FY 105

Query: 136 YDKER 140
             K+ 
Sbjct: 106 IKKQE 110


>gi|20806657|ref|NP_621828.1| formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
           kD subunit (chain I) [Thermoanaerobacter tengcongensis
           MB4]
 gi|20515106|gb|AAM23432.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
           kD subunit (chain I) [Thermoanaerobacter tengcongensis
           MB4]
          Length = 123

 Score = 63.6 bits (153), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 14/109 (12%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +      +        T  YPFEK       RG        N  E+CI C +C+ +CP+
Sbjct: 1   MLSMLKNVVYNLTHKPATRRYPFEKREPFEGTRGHIE-----NDIEKCILCGICQRVCPS 55

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
             I ++         R+   +  +   CI CG C +ACP  +++    +
Sbjct: 56  NCIQVD---------RKEGTWKFEPFACIVCGACVDACPTKSLIMLKEY 95


>gi|326389236|ref|ZP_08210804.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoanaerobacter ethanolicus JW 200]
 gi|325994599|gb|EGD53023.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 123

 Score = 63.6 bits (153), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 14/109 (12%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +      +        T  YPFEK     R RG        N  E+CI C +C+ +CP+
Sbjct: 1   MLDMLKNVVSNLTHKPATRKYPFEKREPFERARGHIE-----NDIEKCILCGICQRVCPS 55

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
             I ++         R+   +  +   CI CG+C +ACP  ++     +
Sbjct: 56  NCIQVD---------RKEGTWGFEPFACIICGVCVDACPTKSLTMLREY 95


>gi|313683180|ref|YP_004060918.1| NADH-ubiquinone oxidoreductase 23 kda subunit [Sulfuricurvum
           kujiense DSM 16994]
 gi|313156040|gb|ADR34718.1| NADH-ubiquinone oxidoreductase 23 kda subunit [Sulfuricurvum
           kujiense DSM 16994]
          Length = 143

 Score = 63.6 bits (153), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 34/101 (33%), Gaps = 11/101 (10%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +     +  FK   T  YP E       +RG         G + CI C  CE +CP 
Sbjct: 1   MFRSMLEAFKNLFKPVRTHPYPAEDIVLPSGYRGLIE-----YGIDACIFCDKCEKVCPP 55

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            AI                 Y  +   CIYCG C  ACP  
Sbjct: 56  GAILFYQHESGE------KEYRYNPWLCIYCGECVRACPKP 90


>gi|171186242|ref|YP_001795161.1| pyruvate ferredoxin oxidoreductase subunit gamma/delta
           [Thermoproteus neutrophilus V24Sta]
 gi|170935454|gb|ACB40715.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit
           [Thermoproteus neutrophilus V24Sta]
          Length = 312

 Score = 63.6 bits (153), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 28/77 (36%), Gaps = 2/77 (2%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR--RTVRYDIDMIKCIYC 106
           G   + +      +CI C+ C   CP  AI            R  RT   D D   C  C
Sbjct: 235 GGWRIEKPIIDHSKCIMCRKCWLYCPDDAIIEAWREAPGPRGRVFRTKAIDFDYQYCKGC 294

Query: 107 GLCQEACPVDAIVEGPN 123
           G+C E CP  AI     
Sbjct: 295 GVCAEVCPTGAIQMVRE 311


>gi|157164904|ref|YP_001466172.1| formate hydrogenlyase complex iron-sulfur subunit [Campylobacter
           concisus 13826]
 gi|112801504|gb|EAT98848.1| hydrogenase-4 component H [Campylobacter concisus 13826]
          Length = 179

 Score = 63.6 bits (153), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 54/131 (41%), Gaps = 19/131 (14%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +  F +  +Y    K T  YPFE       FRG+          + C+ C  C   CP+
Sbjct: 1   MMKLFDITEKY---GKATYAYPFEPYIVPENFRGQP-----DYTYDLCVGCAACGIACPS 52

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            AI ++            + +  D  +CI+CG C E CP  A+    +FE A +      
Sbjct: 53  NAIELKMNDEQTR-----LVWQFDCGRCIFCGRCDEVCPTGAVRLSDSFELAVK------ 101

Query: 136 YDKERLLNNGD 146
           +DK  L+  G+
Sbjct: 102 FDKSALIQRGE 112


>gi|242280699|ref|YP_002992828.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
 gi|242123593|gb|ACS81289.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
          Length = 124

 Score = 63.6 bits (153), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 10/111 (9%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
             L+   +  +T  YP EK     R+RGE       N  + CI CK C+  CP+Q IT+ 
Sbjct: 7   TVLKNLLQKSSTRMYPIEKREPFERYRGEL-----FNNIDECIFCKKCQIKCPSQCITVT 61

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
                  GT     +      C+YC +C + CP +++   P     +  R+
Sbjct: 62  KDKDSGTGTWICDPF-----ACVYCSICVDHCPTNSLYMKPVHRAPSAERE 107


>gi|83591658|ref|YP_425410.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodospirillum rubrum ATCC
           11170]
 gi|83574572|gb|ABC21123.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodospirillum rubrum ATCC
           11170]
          Length = 175

 Score = 63.6 bits (153), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 12/104 (11%)

Query: 31  KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT 90
           + T+ YPF      PRFRG   +        +CI C  C  +CP + I +          
Sbjct: 16  RVTLPYPFVPLKAPPRFRGRPTI-----DGAKCIGCGACAEVCPPRLIEVNDAAST---- 66

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134
                 +++  +C YC  CQE CP  A+    +FE AT  R+ L
Sbjct: 67  ---RTVELNYSRCTYCARCQEICPTGAMTCTEDFEMATADRKNL 107


>gi|257460516|ref|ZP_05625617.1| hydrolase, carbon-nitrogen family [Campylobacter gracilis RM3268]
 gi|257441847|gb|EEV16989.1| hydrolase, carbon-nitrogen family [Campylobacter gracilis RM3268]
          Length = 179

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 19/131 (14%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +  F +  +Y    K T  YPFE       FRG+          E CI C  C   CP+
Sbjct: 1   MMKLFDITEKY---GKATYAYPFEPYIVPENFRGQPEYTY-----ELCIGCAACGIACPS 52

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            AI ++            + ++ D  +CI+CG C E CP  A+  G +FE A +      
Sbjct: 53  NAIELKMNEAQTK-----LIWEFDCGRCIFCGRCDEVCPTGAVRLGNSFELAVK------ 101

Query: 136 YDKERLLNNGD 146
           +DK  L+ +G+
Sbjct: 102 FDKSALIQHGE 112


>gi|327310891|ref|YP_004337788.1| 2-oxoglutarate synthase, 2-oxoacid-ferredoxin oxidoreductase CD
           subunit [Thermoproteus uzoniensis 768-20]
 gi|326947370|gb|AEA12476.1| 2-oxoglutarate synthase, 2-oxoacid-ferredoxin oxidoreductase CD
           subunit [Thermoproteus uzoniensis 768-20]
          Length = 314

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 27/77 (35%), Gaps = 2/77 (2%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR--RTVRYDIDMIKCIYC 106
           G   + R      +CI C+ C   CP  A+            R  +    D D   C  C
Sbjct: 237 GSWRVERPVIDHSKCIMCRRCWIYCPDDAVLEVWREAKGPRGRSVKVKSIDFDYNYCKGC 296

Query: 107 GLCQEACPVDAIVEGPN 123
           G+C E CP  AI     
Sbjct: 297 GICAEVCPTGAIKMVRE 313


>gi|256830388|ref|YP_003159116.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfomicrobium
           baculatum DSM 4028]
 gi|256579564|gb|ACU90700.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfomicrobium
           baculatum DSM 4028]
          Length = 263

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/119 (26%), Positives = 46/119 (38%), Gaps = 17/119 (14%)

Query: 20  FFLCLRYFFKAKTTINYPFEKGS-TSPRFRGEHALRRYPNGEERCIA-CKLCEAICPAQA 77
           F   +    +   T+ YP         R  G   L         C   C  C+ +CP  A
Sbjct: 4   FDTLMNRMRRGCQTMPYPKGPAPALPDRHGGALRL-----DASLCPEGCAQCQGVCPTGA 58

Query: 78  ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
           IT+E G R            +D+ +C++CG C  ACP  AI    +   AT  R++L  
Sbjct: 59  ITLEPGRRA----------RLDLGRCLFCGDCVAACPHGAITTTNDHRLATRRREDLIL 107


>gi|325290168|ref|YP_004266349.1| hypothetical protein Sgly_2055 [Syntrophobotulus glycolicus DSM
           8271]
 gi|324965569|gb|ADY56348.1| hypothetical protein Sgly_2055 [Syntrophobotulus glycolicus DSM
           8271]
          Length = 120

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 14/104 (13%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80
              +R  F    T  YP  K    PR RG   L         CI C +C+  CPA AI++
Sbjct: 8   KTVMRSLFGKPATAMYPIIKNEFYPRTRGRIEL-----NVADCIFCGMCDKRCPADAISV 62

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
                    +R   R++ID  +CI C  C E CP + +  G  +
Sbjct: 63  ---------SRPDKRWEIDRTRCIVCNFCVEVCPKNCLNTGKQY 97


>gi|303327571|ref|ZP_07358012.1| putative Ech hydrogenase, subunit EchF [Desulfovibrio sp. 3_1_syn3]
 gi|302862511|gb|EFL85444.1| putative Ech hydrogenase, subunit EchF [Desulfovibrio sp. 3_1_syn3]
          Length = 139

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 42/108 (38%), Gaps = 14/108 (12%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           +      LR       T  YP E+    P +RG        N  + CI C  C  +CP  
Sbjct: 1   MYMLKNVLRNLSGKPATRLYPLEEREPFPAYRGVI-----HNDVQACIFCSTCARVCPTG 55

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           AIT+++         +  R++ D   C+YC  C E CP   + +    
Sbjct: 56  AITVDA---------KAGRWEYDPFLCVYCSACVEKCPTKCLKQESIH 94


>gi|323706316|ref|ZP_08117882.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534368|gb|EGB24153.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 118

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 14/125 (11%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +           K   T  YPFE+       RG        N  + CI C +C+ +CP+
Sbjct: 1   MLDMLKNVFSNLSKKPVTRMYPFEERKPFDINRGHLE-----NNIDECIFCGMCQRVCPS 55

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
             I+++         R+T  ++ +  +C+ CG+C E CP   +    ++   T+ +  ++
Sbjct: 56  NCISVD---------RKTSVWEYNPFECVLCGVCVEKCPKKCLKLDVHYRSCTDKKYNIH 106

Query: 136 YDKER 140
            +K  
Sbjct: 107 LEKHD 111


>gi|167042388|gb|ABZ07115.1| putative 4Fe-4S binding domain protein [uncultured marine
           crenarchaeote HF4000_ANIW97P9]
          Length = 69

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 28/47 (59%)

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERL 141
              ID  KC++CGLC +ACP  A+    ++E ++ T++ L Y   +L
Sbjct: 1   MPQIDYGKCVFCGLCVDACPFYALYMTNDYELSSFTKEALIYTPAQL 47


>gi|255322774|ref|ZP_05363916.1| hydrolase, carbon-nitrogen family [Campylobacter showae RM3277]
 gi|255300116|gb|EET79391.1| hydrolase, carbon-nitrogen family [Campylobacter showae RM3277]
          Length = 179

 Score = 63.2 bits (152), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/131 (26%), Positives = 53/131 (40%), Gaps = 19/131 (14%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +  F +  +Y    K T  YPFE       FRG+          E C+ C  C   CP+
Sbjct: 1   MMKLFDITEKY---GKATYAYPFEPYKVPENFRGQP-----FYTYELCVGCAACGVACPS 52

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            AI ++   +        + +  D  +CI+CG C E CP   +     FE A +      
Sbjct: 53  NAIELKMNEKQDK-----LVWQFDCGRCIFCGRCDEVCPTGGVRLSQGFELAVK------ 101

Query: 136 YDKERLLNNGD 146
           +DK  L+  G+
Sbjct: 102 FDKSALIQRGE 112


>gi|257064039|ref|YP_003143711.1| NADH:ubiquinone oxidoreductase chain I-like protein [Slackia
           heliotrinireducens DSM 20476]
 gi|256791692|gb|ACV22362.1| NADH:ubiquinone oxidoreductase chain I-like protein [Slackia
           heliotrinireducens DSM 20476]
          Length = 300

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 37/103 (35%), Gaps = 13/103 (12%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80
            + +R  F    T+ YP  +       RG        +  + CI C +C   CPA AI +
Sbjct: 8   KMTMRSLFGTPETVLYPVVEPKRHANTRGHIE----NHAPQDCILCGICMKKCPANAIVV 63

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
               R          + ID  +CI C  C  ACP   +     
Sbjct: 64  SKPERT---------WTIDPFRCIRCNECAIACPKQCLSMHME 97


>gi|322419369|ref|YP_004198592.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Geobacter sp. M18]
 gi|320125756|gb|ADW13316.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           M18]
          Length = 125

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 14/113 (12%)

Query: 19  AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78
                L+  F    T  YPF+K       +GE  L       ++C  C +C+  CP+Q I
Sbjct: 3   MLNTLLKNLFTGYATRLYPFKKREPFQDVKGELKL-----DVDKCTFCTVCQIKCPSQCI 57

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
            ++         R+  ++ ID   C+YCG+C + CP   +     +  A  ++
Sbjct: 58  QVD---------RKERQWRIDPFACVYCGICVDVCPTSCLRHEGYYRPAVYSK 101


>gi|210631900|ref|ZP_03297112.1| hypothetical protein COLSTE_01002 [Collinsella stercoris DSM 13279]
 gi|210159825|gb|EEA90796.1| hypothetical protein COLSTE_01002 [Collinsella stercoris DSM 13279]
          Length = 157

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 12/109 (11%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
           + LR  F    T+ YP E+            +       + CI C +C+  CP  AI ++
Sbjct: 1   MTLRSLFGKPATVQYPAEQVPAMSYEHMRGHVECD---MDTCILCGMCQRACPVGAIAVD 57

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
                    R+   + ID  +CI C  C   CP   +  G +   AT  
Sbjct: 58  ---------RKGGTWSIDQYRCIQCASCTRECPKSCLSMGTSCAPATTD 97


>gi|331658362|ref|ZP_08359324.1| NADH-quinone oxidoreductase subunit I [Escherichia coli TA206]
 gi|331056610|gb|EGI28619.1| NADH-quinone oxidoreductase subunit I [Escherichia coli TA206]
          Length = 115

 Score = 62.8 bits (151), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 7/83 (8%)

Query: 9   SFLFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
             + LKE +  F   +R       + F  + T  YP E     PR+RG   L R P+GEE
Sbjct: 29  KTMTLKELLVGFGTQVRSIWMIGLHAFAKRETRMYPEEPVYLPPRYRGRIVLTRDPDGEE 88

Query: 62  RCIACKLCEAICPAQAITIESGP 84
           RC+AC LC   CP   I+++   
Sbjct: 89  RCVACNLCAVACPVGCISLQKAE 111


>gi|312793274|ref|YP_004026197.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312180414|gb|ADQ40584.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 126

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 50/125 (40%), Gaps = 15/125 (12%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
             G         F    T  YP EK       RG   +       E+CI C +C+  CP+
Sbjct: 1   MFGMLRNVFDNLFSKPATRLYPKEKRPFFKDTRGSLEI-----EIEKCIFCGICQRKCPS 55

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            AI ++         R +  + ++  KC+ C +C E+CP   ++    F   T T +E Y
Sbjct: 56  NAIVVD---------RNSRTWQLNQYKCVLCNVCVESCPKKCLISKEQFNVPT-TYKEFY 105

Query: 136 YDKER 140
             K+ 
Sbjct: 106 IKKQE 110


>gi|220904933|ref|YP_002480245.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219869232|gb|ACL49567.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 133

 Score = 62.8 bits (151), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 14/108 (12%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           +      LR       T  YP E+    P +RG        N  E+CI C  C  +CP  
Sbjct: 1   MYMLKNVLRNLSGKPATRLYPLEEREPFPAYRGVI-----TNEVEKCIFCNSCARVCPTD 55

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           AIT+++         +   +  D   C+YC  C E CP   +V+ P  
Sbjct: 56  AITVDA---------KAGHWHYDPFLCVYCSACVEKCPTKCLVQVPTH 94


>gi|169247668|gb|ACA51667.1| EchF [Thermoanaerobacterium saccharolyticum]
          Length = 118

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 14/125 (11%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +           K   T  YPFE+       RG        N  + CI C +C+ +CP+
Sbjct: 1   MLDMLKSVFSNLSKKPVTRMYPFEERKPFDINRGHLE-----NNIDECIFCGMCQRVCPS 55

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
             I ++         R+T  ++ +  +C+ CG+C E CP   +    ++   T+ +  ++
Sbjct: 56  NCIKVD---------RKTGVWEYNPFECVLCGVCVEKCPKKCLKLDVHYRSCTDKKYNIH 106

Query: 136 YDKER 140
            +K  
Sbjct: 107 LEKHD 111


>gi|73748670|ref|YP_307909.1| hydrogenase, EchF subunit [Dehalococcoides sp. CBDB1]
 gi|147669429|ref|YP_001214247.1| ech hydrogenase subunit F [Dehalococcoides sp. BAV1]
 gi|289432696|ref|YP_003462569.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dehalococcoides sp. GT]
 gi|73660386|emb|CAI82993.1| hydrogenase, EchF subunit [Dehalococcoides sp. CBDB1]
 gi|146270377|gb|ABQ17369.1| ech hydrogenase subunit F [Dehalococcoides sp. BAV1]
 gi|288946416|gb|ADC74113.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dehalococcoides sp. GT]
          Length = 114

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/104 (32%), Positives = 48/104 (46%), Gaps = 14/104 (13%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80
              L+  F A  T  YP+EK  +    RG           +RC  C  C  +CPA+AIT+
Sbjct: 6   GTVLKNLFSAPATRRYPYEKRESFEGSRGSIV-----WDAKRCDMCSDCARVCPARAITV 60

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           +S            + + D +KCIYCG C E C   AI++ P +
Sbjct: 61  DSEKH---------QIEYDPLKCIYCGTCTETCLQHAIIQHPLY 95


>gi|88603009|ref|YP_503187.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methanospirillum hungatei
           JF-1]
 gi|88188471|gb|ABD41468.1| ech hydrogenase subunit F [Methanospirillum hungatei JF-1]
          Length = 126

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 43/109 (39%), Gaps = 14/109 (12%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
             L+   K   TI YP++    +P  RG   +         CI C LC+  CPA AI + 
Sbjct: 9   TVLKNLVKGPATIRYPYQPAKMTPVTRGHLVINID-----DCIFCGLCKMHCPADAIEVS 63

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
              R          + ++  +C+ CG C   CP D +     +   T +
Sbjct: 64  KPDRT---------WRLNQFQCVICGCCVSYCPKDCLSIEQTYLPPTTS 103


>gi|9367355|emb|CAB97258.1| NADH dehydrogenase 8 subunit [Wallaceina inconstans]
 gi|9367357|emb|CAB97257.1| NADH gehydrogenase 8 subunit [Wallaceina brevicula]
          Length = 102

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/90 (44%), Positives = 47/90 (52%), Gaps = 1/90 (1%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            TI  P E    S   RG H LR Y  G ERCIAC+LCE ICP+ AI +    R   G R
Sbjct: 1   ITIVLPIELTIVSLLVRGNHFLRFYWCGLERCIACRLCEYICPSLAIDVR-VLRSLLGFR 59

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            +  + +   +CIYCG C   CP DAI   
Sbjct: 60  FSEIFTLSYRRCIYCGFCMHVCPTDAITHS 89


>gi|193479938|gb|ACF17991.1| EchF [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 129

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 14/108 (12%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           +      LR      +T  YPFE       FRG+       N    CI CK C+  CP+Q
Sbjct: 1   MYMLSNVLRNIMGKYSTRLYPFETRPAYEGFRGKLV-----NNIHDCIFCKSCQIKCPSQ 55

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
            IT++             ++D D   C+YC +C +ACP   +      
Sbjct: 56  CITVDPKE---------GKWDCDPFACVYCSVCVDACPTHCLSMENQH 94


>gi|323159340|gb|EFZ45325.1| hydrogenase-4 component H [Escherichia coli E128010]
          Length = 95

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 15/105 (14%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +      +R       T+ YPF     SP FRG+  L        +CIAC  C   CPA
Sbjct: 1   MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLM-----PSQCIACGACA--CPA 50

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            A+TI++  + +        + + + +CIYCG C+E CP  AI  
Sbjct: 51  NALTIQTDDQQNS-----RTWQLYLRRCIYCGRCEEVCPTRAISL 90


>gi|312877212|ref|ZP_07737181.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796021|gb|EFR12381.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 126

 Score = 62.4 bits (150), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 15/125 (12%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
             G     L   F    T  YP EK       +G   +       E+CI C +C+  CP+
Sbjct: 1   MFGMLKNVLDNLFSKPATRLYPKEKRPFFKDTKGSLEI-----EIEKCIFCGICQRKCPS 55

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            AI ++   R          + ++  KC+ C +C E+CP   ++    F   T  ++  Y
Sbjct: 56  NAIVVDRNLRT---------WQLNQYKCVLCNVCVESCPKKCLISKEQFNVPTTYKE-FY 105

Query: 136 YDKER 140
             K+ 
Sbjct: 106 IKKQE 110


>gi|269216333|ref|ZP_06160187.1| formate hydrogenlyase subunit 6 [Slackia exigua ATCC 700122]
 gi|269130592|gb|EEZ61670.1| formate hydrogenlyase subunit 6 [Slackia exigua ATCC 700122]
          Length = 180

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 30/140 (21%), Positives = 44/140 (31%), Gaps = 10/140 (7%)

Query: 19  AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78
                +        T  YP         FRG+                  C + CP  AI
Sbjct: 1   MLKTLINALKTGNATTQYPAAPMDLPYGFRGKPEHDEKQCIACA-----ACASACPPNAI 55

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
            +             + ++I+  +CI+CG C+E CP DAI  G  FE A    ++L    
Sbjct: 56  QMTVDESAGT-----IAWNINYGRCIFCGRCEEVCPFDAIKLGNEFELAVMAAEDLEESS 110

Query: 139 ERLLNNGDRWESEIVRNIVT 158
             LL +              
Sbjct: 111 TYLLEHCAACGKPFAPRKQV 130


>gi|146303970|ref|YP_001191286.1| pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta
           [Metallosphaera sedula DSM 5348]
 gi|145702220|gb|ABP95362.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Metallosphaera sedula DSM 5348]
          Length = 362

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 29/85 (34%), Gaps = 11/85 (12%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           RG     R     + CI C LC   CP                     YDI    C+ CG
Sbjct: 254 RGTTKTERPTVDFDACIKCDLCWVYCPDGCFDKTPEG----------YYDIAYDYCVGCG 303

Query: 108 LCQEACPV-DAIVEGPNFEFATETR 131
           +C E CPV + IV          TR
Sbjct: 304 ICAEVCPVKNCIVMVDEKRLPDYTR 328



 Score = 33.5 bits (75), Expect = 9.5,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 17/41 (41%)

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
             +   GT +T R  +D   CI C LC   CP     + P 
Sbjct: 249 NEQFKRGTTKTERPTVDFDACIKCDLCWVYCPDGCFDKTPE 289


>gi|218886618|ref|YP_002435939.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218757572|gb|ACL08471.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 131

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 14/108 (12%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           +      LR      +T  YPFE       FRG+       N    CI CK C+  CP+Q
Sbjct: 1   MYMLSNVLRNIMGKYSTRLYPFETRPAYEGFRGKLV-----NNIHDCIFCKSCQIKCPSQ 55

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
            IT++             ++D D   C+YC +C +ACP   +      
Sbjct: 56  CITVDPKE---------GKWDCDPFACVYCSVCVDACPTHCLSMENQH 94


>gi|160879878|ref|YP_001558846.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Clostridium phytofermentans ISDg]
 gi|160428544|gb|ABX42107.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           phytofermentans ISDg]
          Length = 120

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 42/123 (34%), Gaps = 16/123 (13%)

Query: 15  EFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP 74
                     +  F    T+ YP +      R RG+  +         CI C +C+  CP
Sbjct: 2   SVFSMTKTLFKNLFHGPYTVLYPIKAKDKFDRTRGKIEISID-----DCIFCSMCQRRCP 56

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET--RQ 132
             A+T++              + I+   CI CG C E CP   +     +   +E   R 
Sbjct: 57  TGALTVDKAK---------SSWSIERFSCIQCGYCTEVCPKKCLHMDNQYTTPSENKIRD 107

Query: 133 ELY 135
           E  
Sbjct: 108 EFV 110


>gi|298289305|gb|ADI75232.1| NADH dehydrogenase subunit 8 [Leishmania amazonensis]
          Length = 145

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/111 (41%), Positives = 58/111 (52%), Gaps = 1/111 (0%)

Query: 11  LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70
           +F  +FV +FF+C    F    T+  P E    S   RG H LR Y  G ERCIAC+LC+
Sbjct: 1   MFCYDFVFSFFVCFYMCFLCCVTLILPCEITIVSICARGHHFLRFYWCGLERCIACRLCD 60

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            ICP+ AI +    R   G R +  + I   +CIYCG C   CP DAI   
Sbjct: 61  FICPSLAIDVRC-IRSLCGYRYSDLFYISYRRCIYCGFCMHVCPTDAITHS 110


>gi|126460655|ref|YP_001056933.1| pyruvate ferredoxin oxidoreductase subunit gamma/delta [Pyrobaculum
           calidifontis JCM 11548]
 gi|126250376|gb|ABO09467.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit [Pyrobaculum
           calidifontis JCM 11548]
          Length = 312

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 27/77 (35%), Gaps = 2/77 (2%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--TVRYDIDMIKCIYC 106
           G   + +      +CI C+ C   CP  AI            R+      D D   C  C
Sbjct: 235 GGWRIDKPVIDHSKCIMCRKCWLYCPDDAIIEAWREVEGPRGRKFRMKFIDFDYAFCKGC 294

Query: 107 GLCQEACPVDAIVEGPN 123
           G+C E CP  AI     
Sbjct: 295 GVCAEVCPTGAIQMVRE 311



 Score = 33.9 bits (76), Expect = 8.4,   Method: Composition-based stats.
 Identities = 17/46 (36%), Positives = 21/46 (45%)

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           A A+   +      G  R  +  ID  KCI C  C   CP DAI+E
Sbjct: 221 AGAVFPGTSFFYTTGGWRIDKPVIDHSKCIMCRKCWLYCPDDAIIE 266


>gi|320161602|ref|YP_004174827.1| iron-sulfur binding protein [Anaerolinea thermophila UNI-1]
 gi|319995456|dbj|BAJ64227.1| iron-sulfur binding protein [Anaerolinea thermophila UNI-1]
          Length = 146

 Score = 62.0 bits (149), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/121 (27%), Positives = 48/121 (39%), Gaps = 12/121 (9%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            +R  FK   T  YPFE+      FRG+          E+C  C LC   CPA AI +  
Sbjct: 12  VVRSVFKKPATQLYPFERKPAPVAFRGKLV-----WEPEKCAGCMLCVKDCPANAIELIV 66

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP-NFEFATETRQEL--YYDKE 139
             + +    +         +CIYC  C  +C    +      +E A+  ++    YY KE
Sbjct: 67  LDKVN----KRFVMRYHADRCIYCAQCVVSCRFKCLDLSDEEWELASTGKEPFTVYYGKE 122

Query: 140 R 140
            
Sbjct: 123 E 123


>gi|303325434|ref|ZP_07355877.1| hydrogenase subunit [Desulfovibrio sp. 3_1_syn3]
 gi|302863350|gb|EFL86281.1| hydrogenase subunit [Desulfovibrio sp. 3_1_syn3]
          Length = 271

 Score = 61.7 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 7/118 (5%)

Query: 19  AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA- 77
              +      +   T++YP  + + SPR+ G   L      +  C  C+ C   CPA A 
Sbjct: 1   MLRIIKERLHQKYRTLDYPRREPALSPRYLGRPTLT-----DVDCGDCRACFTACPAGAL 55

Query: 78  -ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134
             +  +       +       +DM +CI+CG C+ ACP  A         A   R+ L
Sbjct: 56  LPSPSAASGPPGQSCGARTPLLDMGRCIFCGACRAACPKGAFHFSGEHRLAAFRREAL 113


>gi|120603549|ref|YP_967949.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio vulgaris DP4]
 gi|120563778|gb|ABM29522.1| ech hydrogenase subunit F [Desulfovibrio vulgaris DP4]
          Length = 130

 Score = 61.7 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 14/108 (12%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           +      L+   +   T  YPF+       FRG        N  E CI CK C+  CP+Q
Sbjct: 1   MYMLSNVLKNLSRKYATRLYPFQTRPAFEGFRGRLV-----NKIEDCIFCKSCQIKCPSQ 55

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
            IT++          +   +D D   C+YC +C +ACP   +      
Sbjct: 56  CITVDP---------KAGTWDCDPFACVYCSVCVDACPTQCLSMVNVH 94


>gi|46578845|ref|YP_009653.1| ech hydrogenase subunit EchF [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46448257|gb|AAS94912.1| Ech hydrogenase, subunit EchF, putative [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|311232709|gb|ADP85563.1| Ech hydrogenase subunit EchF [Desulfovibrio vulgaris RCH1]
          Length = 133

 Score = 61.7 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 14/108 (12%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           +      L+   +   T  YPF+       FRG        N  E CI CK C+  CP+Q
Sbjct: 1   MYMLSNVLKNLSRKYATRLYPFQTRPAFEGFRGRLV-----NKIEDCIFCKSCQIKCPSQ 55

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
            IT++          +   +D D   C+YC +C +ACP   +      
Sbjct: 56  CITVDP---------KAGTWDCDPFACVYCSVCVDACPTQCLSMVNVH 94


>gi|304315650|ref|YP_003850795.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302777152|gb|ADL67711.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 118

 Score = 61.7 bits (148), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 14/125 (11%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +           +   T  YPF +       RG        N  + CI C +C+ +CP+
Sbjct: 1   MLDMLKSVFSNLSRKPVTRMYPFVERKPFDINRGHLE-----NNIDECIFCGMCQRVCPS 55

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
             I ++         R+T  ++ +  +C+ CG+C E CP   +    ++   T+ +  ++
Sbjct: 56  NCIKVD---------RKTSVWEYNPFECVLCGVCVEKCPKKCLKLDVHYRSCTDKKYNIH 106

Query: 136 YDKER 140
            +K  
Sbjct: 107 LEKHD 111


>gi|282856071|ref|ZP_06265357.1| NADH-plastoquinone oxidoreductase subunit [Pyramidobacter piscolens
           W5455]
 gi|282586092|gb|EFB91374.1| NADH-plastoquinone oxidoreductase subunit [Pyramidobacter piscolens
           W5455]
          Length = 192

 Score = 61.7 bits (148), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/157 (22%), Positives = 54/157 (34%), Gaps = 35/157 (22%)

Query: 16  FVGAFFLC-LRYFFKAKTTINYPFEKGS-----------------TSPRFRGEHALRRYP 57
            + A  L  LR FF    T  +P  +                        R      R  
Sbjct: 1   MLNAMSLTVLRQFFMRCLTRPFPAMRMPDSMSGALQAAAEGKVALNPAVPRWGRFRGRLN 60

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
               +CI C +C  +CPA+AI  +         +  +  D    +C +C  C + CPV A
Sbjct: 61  YDRAKCIGCGMCTKVCPARAIVFDPDTEGQKPRKVMLHGD----RCCFCAQCNDVCPVSA 116

Query: 118 IVEGPNFEF-------ATETRQE------LYYDKERL 141
           +    +F F       A  TR++      L + KE L
Sbjct: 117 LSMTTDFAFSSSGDRKAGTTRKDTGKAVRLPFQKEWL 153


>gi|256380639|ref|YP_003104299.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Actinosynnema
           mirum DSM 43827]
 gi|255924942|gb|ACU40453.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Actinosynnema
           mirum DSM 43827]
          Length = 173

 Score = 61.3 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 31/96 (32%), Positives = 40/96 (41%), Gaps = 13/96 (13%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT--------RRT 93
              PR RG  AL      E  C  C +C   CP   I I+S                   
Sbjct: 3   DLPPRTRGVIALL-----EANCTVCMICARECPDWCIHIDSHTEVEQQPGSARPRARNVL 57

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
            R+ ID  +C+YCG+C EACP DA+   P+F +   
Sbjct: 58  DRFAIDYGQCLYCGICVEACPFDALHWAPDFSYPGT 93


>gi|206895851|ref|YP_002247250.1| NADH dehydrogenase subunit [Coprothermobacter proteolyticus DSM
           5265]
 gi|206738468|gb|ACI17546.1| NADH dehydrogenase subunit [Coprothermobacter proteolyticus DSM
           5265]
          Length = 183

 Score = 61.3 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/106 (30%), Positives = 40/106 (37%), Gaps = 14/106 (13%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
             E  G     L           +P E     P++RG+          E C  C+ CE +
Sbjct: 3   FGEIFGKLMDTL---VGGPVVKPFPKEPVKVPPKWRGKPL-----YDAEDCTGCRQCERV 54

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           CP  AITIE              Y ID   CIYC  C +ACP  A+
Sbjct: 55  CPPGAITIEDKKGE------FFHYKIDYGVCIYCWYCIDACPTTAL 94


>gi|197124107|ref|YP_002136058.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Anaeromyxobacter sp.
           K]
 gi|196173956|gb|ACG74929.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Anaeromyxobacter sp.
           K]
          Length = 256

 Score = 61.3 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 39/107 (36%), Gaps = 14/107 (13%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
           T+ +P        RFRG   +            C  C   CP +AI              
Sbjct: 15  TVAFPDGPPRFPARFRGRPVVDPSRCEAG----CAGCAEACPTEAILDPG---------- 60

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139
           T    +D+ +C +CG C  ACP  AI    +   A  TR+ L   ++
Sbjct: 61  TATMRVDLGRCTFCGDCATACPPGAIRFTGDHRLAARTREALVVSRD 107


>gi|302389112|ref|YP_003824933.1| NADH dehydrogenase (quinone) [Thermosediminibacter oceani DSM
           16646]
 gi|302199740|gb|ADL07310.1| NADH dehydrogenase (quinone) [Thermosediminibacter oceani DSM
           16646]
          Length = 625

 Score = 61.3 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 15/101 (14%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
             L+Y F+ +   +   ++           AL+RY      C  C  C  +CP  AI+ E
Sbjct: 540 TTLKY-FRDEYLAHVREKRCPAGVC----QALKRYAIDATVCKGCSKCSRVCPVGAISGE 594

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                         + I+  KCI CG C EACP  A+ EG 
Sbjct: 595 IKKP----------FTINPDKCIKCGACVEACPFKAVKEGK 625


>gi|221135174|ref|ZP_03561477.1| electron transport complex, RnfABCDGE type, C subunit [Glaciecola
           sp. HTCC2999]
          Length = 529

 Score = 61.3 bits (147), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 37/106 (34%), Gaps = 3/106 (2%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
             E  CI C LC   CPA  +  +                  +  CI CG C   CP   
Sbjct: 377 EDERPCIRCGLCADACPAG-LLPQQLFWHSKAKEYDKAQAYHLDACIECGACAYVCP-SE 434

Query: 118 IVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           I     +  A    +    +KE+     +R+E+   R ++ D   R
Sbjct: 435 IPLVHYYRKAKTDIKYQAAEKEKSEKARERFETRQAR-LLADKQAR 479


>gi|86160078|ref|YP_466863.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85776589|gb|ABC83426.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 256

 Score = 61.3 bits (147), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 39/107 (36%), Gaps = 14/107 (13%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
           T+ +P        RFRG   +      +     C  C   CP  AI              
Sbjct: 15  TVAFPDGPPRFPARFRGRPVVEPSRCEDG----CAACVEACPTDAILDAGK--------- 61

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139
                +D+ +C +CG C  ACP  A+    +   A+ +R+ L   ++
Sbjct: 62  -ATMRVDLGRCTFCGDCAAACPSGALRFTGDHRLASRSREALVVSRD 107


>gi|57234353|ref|YP_181594.1| hydrogenase, EchF subunit, putative [Dehalococcoides ethenogenes
           195]
 gi|57224801|gb|AAW39858.1| hydrogenase, EchF subunit, putative [Dehalococcoides ethenogenes
           195]
          Length = 114

 Score = 60.9 bits (146), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 43/104 (41%), Gaps = 14/104 (13%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80
              L+  F    T  YP+EK  +    RG            RC  C  C  +CPA+AIT+
Sbjct: 6   GTVLKNLFSTPPTRRYPYEKRESFAGSRGNI-----TWDAGRCDMCNDCARVCPARAITL 60

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           +               + D +KCIYCG C E C   AI + P +
Sbjct: 61  KPEKHL---------IEYDPLKCIYCGTCAETCLQHAITQHPLY 95


>gi|257791326|ref|YP_003181932.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|317490463|ref|ZP_07948945.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325831427|ref|ZP_08164681.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1]
 gi|257475223|gb|ACV55543.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
 gi|316910456|gb|EFV32083.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325486681|gb|EGC89129.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1]
          Length = 118

 Score = 60.9 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 14/111 (12%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80
            + L   FK   T+ YP E  +     +G        N  +RCI C +C+  CP  AI +
Sbjct: 8   KMTLGGLFKKPETLMYPVETKTPPAGLKGHVV-----NDVDRCILCGICQKRCPCAAIVV 62

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           +   R          + ID  +C+ CG C   CP D +   P +     ++
Sbjct: 63  DKPART---------WTIDRFRCVQCGSCVRECPKDCLTMEPTYTPPATSK 104


>gi|307352625|ref|YP_003893676.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanoplanus petrolearius DSM 11571]
 gi|307155858|gb|ADN35238.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanoplanus
           petrolearius DSM 11571]
          Length = 128

 Score = 60.9 bits (146), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 39/101 (38%), Gaps = 14/101 (13%)

Query: 24  LRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG 83
           L+       T+ YPFE        RG   +         CI C LC   CPA AI +   
Sbjct: 13  LKNLVGGPATLRYPFEPAKRYDASRGHIEINID-----DCIFCGLCSKNCPADAIEVSKP 67

Query: 84  PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
            R          ++ID  +CI C  C EACP D +     +
Sbjct: 68  DRT---------WEIDRFRCIICNSCVEACPKDCLSTSNVY 99


>gi|182414283|ref|YP_001819349.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutus terrae
           PB90-1]
 gi|177841497|gb|ACB75749.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutus terrae
           PB90-1]
          Length = 285

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/154 (19%), Positives = 51/154 (33%), Gaps = 25/154 (16%)

Query: 23  CLRY-FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC-IACKLCEAICPAQAITI 80
            L +   + + T+ +P       P   G            +C   C  C  +CP QAIT+
Sbjct: 6   TLIHRLKRGRETMAFPNGPAPALPDRHGGA----LRVDASKCADGCAACAEVCPTQAITV 61

Query: 81  ESGPRCHDGTRRTV-----------RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
                   G                +  +D+ +C++C  C + CP  AI +  +   A  
Sbjct: 62  ADSKVAPPGITDGTPGPRGNASALPKITLDLGRCVFCAECVKTCPAGAITQTGDHRMAVR 121

Query: 130 TRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            R++L          G   + E+      D   R
Sbjct: 122 RREDLVL--------GAPGQEEVRLAAALDEKLR 147


>gi|322420679|ref|YP_004199902.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. M18]
 gi|320127066|gb|ADW14626.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. M18]
          Length = 252

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 29/103 (28%), Positives = 40/103 (38%), Gaps = 16/103 (15%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
           T+ YP E      RFRG   L+      +    C+LC   CP  A+    G     G   
Sbjct: 15  TMAYPKEPLPLPERFRGYPELKSSLCPPD----CRLCADACPVGAVGCSEGLSVDLG--- 67

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
                    KC++C  C +ACP   I  G +   A   R++L 
Sbjct: 68  ---------KCLFCAECADACPKGGISYGNDARLAVNRREDLV 101


>gi|124486432|ref|YP_001031048.1| ech hydrogenase subunit F [Methanocorpusculum labreanum Z]
 gi|124363973|gb|ABN07781.1| ech hydrogenase subunit F [Methanocorpusculum labreanum Z]
          Length = 124

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 14/138 (10%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           +      L+ FF    T  +P+         RG            +C +C +C   CP+Q
Sbjct: 1   MKMLKTILKQFFDKPATTTFPYTPLENFEGTRGHLVF-----DPSKCTSCMMCMKRCPSQ 55

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
           AIT++   +          + +D  +C+ CG C + C  D +     +  +    +    
Sbjct: 56  AITVQRAEKI---------WTLDRFRCVMCGNCVDVCKFDVLSMEREYAKSATPTERGVE 106

Query: 137 DKERLLNNGDRWESEIVR 154
             E      +R + E   
Sbjct: 107 TYEITYVKPERPKKETAE 124


>gi|222054796|ref|YP_002537158.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp.
           FRC-32]
 gi|221564085|gb|ACM20057.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp.
           FRC-32]
          Length = 256

 Score = 60.5 bits (145), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 43/117 (36%), Gaps = 15/117 (12%)

Query: 19  AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78
                L    +   T+ YP E       FRG   L       +    C+LC   CP  AI
Sbjct: 1   MLKTILARIHQKHRTLKYPDEPAQLPELFRGYPVLNAEACPAD----CRLCANACPFGAI 56

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
           +                  +DM KC++C  C  +CP  AI    + + A  TR++L 
Sbjct: 57  SRNEN-----------CLALDMGKCLFCPECTLSCPHGAIRFSRDEKLAARTRRDLI 102


>gi|283853890|ref|ZP_06371103.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. FW1012B]
 gi|283570713|gb|EFC18760.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. FW1012B]
          Length = 123

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 14/104 (13%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
             F   +T  YPF        FRG        N  + CI C+ C+  CP+Q I++++   
Sbjct: 11  NLFSKSSTRLYPFAVRGHFEGFRGTLV-----NNIDECIFCRTCQIKCPSQCISVDN--- 62

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
                 +   +  + + C+YCG+C + CP   +           
Sbjct: 63  ------KAGTWTCEAMSCVYCGVCVDVCPTSCLSMTKEHRPVAT 100


>gi|255654750|ref|ZP_05400159.1| putative reductase [Clostridium difficile QCD-23m63]
 gi|296449496|ref|ZP_06891273.1| nitroreductase fused to ferredoxin domain protein [Clostridium
           difficile NAP08]
 gi|296878181|ref|ZP_06902196.1| nitroreductase fused to ferredoxin domain protein [Clostridium
           difficile NAP07]
 gi|296261560|gb|EFH08378.1| nitroreductase fused to ferredoxin domain protein [Clostridium
           difficile NAP08]
 gi|296430934|gb|EFH16766.1| nitroreductase fused to ferredoxin domain protein [Clostridium
           difficile NAP07]
          Length = 273

 Score = 60.1 bits (144), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 38/107 (35%), Gaps = 14/107 (13%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 E+C+ C +CE+ C   AI ++                     CI CG C   CP
Sbjct: 1   MIDINLEKCVGCGMCESDCLVNAIKVKDDKAKVKNI-----------LCINCGHCMAICP 49

Query: 115 VDAIVEG--PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
            DAI        E     R+    + E+LL N  ++   I +    +
Sbjct: 50  TDAIEMQGFDKNEVVEYNRESFELEPEKLL-NFIKFRRSIRQYKDIE 95


>gi|253699704|ref|YP_003020893.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. M21]
 gi|251774554|gb|ACT17135.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. M21]
          Length = 252

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 50/126 (39%), Gaps = 24/126 (19%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
           T+ YP E      RFRG   ++     +E    C++C   CP  A+  + G     G   
Sbjct: 15  TMAYPREPLPLPERFRGYPEIKADLCPKE----CRVCADACPVGALECQPGLSLDLG--- 67

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEI 152
                    KC++C  C  ACP  AIV  P+   A   R+EL       +  GD  E  +
Sbjct: 68  ---------KCLFCPECSRACPNGAIVHTPDARLAANHREELV------VRPGD--ERRL 110

Query: 153 VRNIVT 158
            + +  
Sbjct: 111 AQALEK 116


>gi|118578783|ref|YP_900033.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Pelobacter
           propionicus DSM 2379]
 gi|118501493|gb|ABK97975.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Pelobacter
           propionicus DSM 2379]
          Length = 252

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 42/122 (34%), Gaps = 16/122 (13%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
           T  YP       PRFRG   L            C+ C   CP  AI+ +       G   
Sbjct: 15  TFAYPDAPLPLPPRFRGLPLLDASRCESG----CRACAESCPYGAISADGALSLDMG--- 67

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEI 152
                    KC++CG C E C   AI    +   A+ +R+ L           +    E+
Sbjct: 68  ---------KCLFCGQCAEECRQGAISFSNDAALASRSREGLVVRAAEQYQPAEAMGREL 118

Query: 153 VR 154
           +R
Sbjct: 119 LR 120


>gi|119719979|ref|YP_920474.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermofilum pendens Hrk 5]
 gi|119525099|gb|ABL78471.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermofilum
           pendens Hrk 5]
          Length = 233

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 9/105 (8%)

Query: 20  FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79
               ++   +   T+  P+     +   RG   L       ++C+ C LC   CP+ AIT
Sbjct: 11  LKTAVKSLLQPPLTV--PYTGHLNNSFIRGAPLL-----DRDKCLGCSLCARSCPSGAIT 63

Query: 80  IESGPRCHDGTRRTVR--YDIDMIKCIYCGLCQEACPVDAIVEGP 122
           +  G +   G +   R     +  +CIYCG+C E CP  AI    
Sbjct: 64  MVPGGKKVVGGKEVERKIPSFNYYQCIYCGVCAEVCPGRAISMVK 108


>gi|239904917|ref|YP_002951655.1| Ech hydrogenase subunit EchF [Desulfovibrio magneticus RS-1]
 gi|239794780|dbj|BAH73769.1| Ech hydrogenase subunit EchF [Desulfovibrio magneticus RS-1]
          Length = 120

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 14/111 (12%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
             F   +T  YPF        FRG   +         CI C+ C   CP+Q I +++   
Sbjct: 11  NLFSKSSTRLYPFAVRGHFEGFRGTLNINID-----ECIFCRTCMIKCPSQCIAVDN--- 62

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
                 +   +  + + C+YCG+C + CP   +            +Q + Y
Sbjct: 63  ------KAGTWTCEAMSCVYCGVCVDVCPTGCLSMSKEHRPVATEKQTMAY 107


>gi|303248160|ref|ZP_07334424.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           fructosovorans JJ]
 gi|302490424|gb|EFL50333.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           fructosovorans JJ]
          Length = 121

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 14/107 (13%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
                 +T  YPF        FRG        N  + CI C+ C   CP+Q IT+++   
Sbjct: 11  NLLTKSSTRLYPFAVRGHFEGFRGTLV-----NNIDECIFCRSCMIKCPSQCITVDN--- 62

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
                 +   +  D + C+YCG+C + CP + +         +   +
Sbjct: 63  ------KVGTWTCDAMACVYCGICVDVCPTNCLSMTKEHRPVSTEHE 103


>gi|269215528|ref|ZP_06159382.1| NADH dehydrogenase I, I subunit [Slackia exigua ATCC 700122]
 gi|269131015|gb|EEZ62090.1| NADH dehydrogenase I, I subunit [Slackia exigua ATCC 700122]
          Length = 154

 Score = 60.1 bits (144), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 14/101 (13%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80
            + +R  FK   TI YP E        RG           ++C+ C +C+ +CP  +I +
Sbjct: 8   KMTIRSLFKKPETIMYPLESPEPYAAMRGHV-----DVEPQKCVLCSICQRVCPTDSIVV 62

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           +         ++   + I+   C+ CG C  ACP DA+   
Sbjct: 63  D---------KKGASWTINWFSCVICGECVRACPHDALDMH 94


>gi|78355312|ref|YP_386761.1| iron-sulfur cluster-binding protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78217717|gb|ABB37066.1| iron-sulfur cluster-binding protein, putative [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 427

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 14/104 (13%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                EERC  C  C A CP  AIT+    +    TRR     +D   C+ CG C   CP
Sbjct: 284 MAQIQEERCTGCGKCAAACPIDAITMVPAAQTTPDTRRRRSVQVDTSLCLGCGACALKCP 343

Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158
             A+V         E R++  +  E      D +E  I++++  
Sbjct: 344 TGAMVL--------EKRRQRVFHPE------DSFERVILQSLER 373


>gi|298245739|ref|ZP_06969545.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Ktedonobacter racemifer DSM 44963]
 gi|297553220|gb|EFH87085.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Ktedonobacter racemifer DSM 44963]
          Length = 601

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/111 (27%), Positives = 37/111 (33%), Gaps = 12/111 (10%)

Query: 29  KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88
           +   T   P E    +   R              CI C  C  ICP   I++E   R   
Sbjct: 481 RETETGYSPQEAVVQAR--RCLQCQLNIMIDPSICILCSGCVDICPYDCISMEGLSRVVK 538

Query: 89  GTRRTV---------RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
           G                 ID  KCI CGLC   CP DAI     FE ++  
Sbjct: 539 GDPMHQGTSTWEGGADMIIDEEKCIRCGLCVVRCPTDAISMV-QFEVSSPN 588



 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 25/90 (27%), Gaps = 8/90 (8%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIA------CKLCEAICPAQAITIESGPRCHDGT 90
           P E+       RG      Y +   + I                      E+  +     
Sbjct: 443 PAEEIELPDYRRGMV--DNYESIPHQLIPSLPLSERYSHTRETETGYSPQEAVVQARRCL 500

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           +  +   ID   CI C  C + CP D I  
Sbjct: 501 QCQLNIMIDPSICILCSGCVDICPYDCISM 530


>gi|320101037|ref|YP_004176629.1| dihydroorotate dehydrogenase family protein [Desulfurococcus
           mucosus DSM 2162]
 gi|319753389|gb|ADV65147.1| dihydroorotate dehydrogenase family protein [Desulfurococcus
           mucosus DSM 2162]
          Length = 403

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 7/62 (11%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E++CI C  CE +C   A+ +E       G +R  R  ID+ KC  CGLC   CP  AI
Sbjct: 346 DEKKCIGCGFCEQVCNYDAVHVEDA-----GGKRVAR--IDLTKCYGCGLCTSVCPTRAI 398

Query: 119 VE 120
             
Sbjct: 399 HF 400


>gi|288961343|ref|YP_003451682.1| 4Fe-4S ferredoxin, iron-sulfur binding [Azospirillum sp. B510]
 gi|288913651|dbj|BAI75138.1| 4Fe-4S ferredoxin, iron-sulfur binding [Azospirillum sp. B510]
          Length = 176

 Score = 59.7 bits (143), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 38/104 (36%), Gaps = 12/104 (11%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           +      L    +   T   P +     P +RG  A     +   RC AC  C  +C  +
Sbjct: 1   MAMLKTILGNLLRPSRT-RAPADMPDVPPAYRGALA-----HEAARCTACGTCAYVCAPK 54

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           AI+    P      R  +       +C +CGLC + CP  AI  
Sbjct: 55  AISFTQDPGLSVSWRFFI------GQCSFCGLCAQNCPTQAIRL 92


>gi|270308172|ref|YP_003330230.1| hydrogenase, EchF subunit [Dehalococcoides sp. VS]
 gi|270154064|gb|ACZ61902.1| hydrogenase, EchF subunit [Dehalococcoides sp. VS]
          Length = 114

 Score = 59.3 bits (142), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/104 (30%), Positives = 43/104 (41%), Gaps = 14/104 (13%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80
              L+  F    T  YP+EK  +    RG            RC  C  C  +CPA AIT+
Sbjct: 6   GTVLKNLFSTPPTRRYPYEKRESFADSRGNI-----TWDAGRCDMCNDCARVCPAHAITL 60

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           +               + D +KCIYCG C E C   AI++ P +
Sbjct: 61  KPEKHI---------IEYDPLKCIYCGTCTETCLQHAIIQHPLY 95


>gi|255099820|ref|ZP_05328797.1| putative reductase [Clostridium difficile QCD-63q42]
          Length = 273

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 38/107 (35%), Gaps = 14/107 (13%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 E+C+ C +CE+ C   AI ++                     CI CG C   CP
Sbjct: 1   MIDINLEKCVGCGMCESDCLVNAIKVKDDKAKVKNI-----------LCINCGHCMAICP 49

Query: 115 VDAIVEG--PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
            DAI        E     R+    + E+LL N  ++   I +    +
Sbjct: 50  TDAIEMQGFDKNEVIEYNRESFELEPEKLL-NFIKFRRSIRQYKDIE 95


>gi|13541074|ref|NP_110762.1| hypothetical protein TVN0243 [Thermoplasma volcanium GSS1]
          Length = 984

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 42/122 (34%), Gaps = 9/122 (7%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E                Y     +CI C  C   C       E+        R  V
Sbjct: 129 KYPYEPKPYPVDDSNPF----YVYDPNQCILCGRCVEACQ-DVQVNETLSIDWSRERPRV 183

Query: 95  RYD----IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWES 150
            +D    I+   C+ CG C   CPV+A++E      A          K+++++     E 
Sbjct: 184 VWDNDVPINESSCVSCGHCVTVCPVNALMEKTMLGKAGFLTGLEKNTKQKMIDVVKSIEP 243

Query: 151 EI 152
           EI
Sbjct: 244 EI 245


>gi|14324457|dbj|BAB59385.1| formate hydrogenase [Thermoplasma volcanium GSS1]
          Length = 981

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 42/122 (34%), Gaps = 9/122 (7%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E                Y     +CI C  C   C       E+        R  V
Sbjct: 126 KYPYEPKPYPVDDSNPF----YVYDPNQCILCGRCVEACQ-DVQVNETLSIDWSRERPRV 180

Query: 95  RYD----IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWES 150
            +D    I+   C+ CG C   CPV+A++E      A          K+++++     E 
Sbjct: 181 VWDNDVPINESSCVSCGHCVTVCPVNALMEKTMLGKAGFLTGLEKNTKQKMIDVVKSIEP 240

Query: 151 EI 152
           EI
Sbjct: 241 EI 242


>gi|255305705|ref|ZP_05349877.1| putative reductase [Clostridium difficile ATCC 43255]
          Length = 273

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 38/107 (35%), Gaps = 14/107 (13%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 E+C+ C +CE+ C   AI ++                     CI CG C   CP
Sbjct: 1   MIDINLEKCVGCGMCESDCLVNAIKVKDDKAKVKNI-----------LCINCGHCMAICP 49

Query: 115 VDAIVEG--PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
            DAI        E     R+    + E+LL N  ++   I +    +
Sbjct: 50  TDAIEMQGFDKNEVIEYNRESFELEPEKLL-NFIKFRRSIRQYKDIE 95


>gi|226361233|ref|YP_002779011.1| ferredoxin--NADP(+) reductase [Rhodococcus opacus B4]
 gi|226239718|dbj|BAH50066.1| putative ferredoxin--NADP(+) reductase [Rhodococcus opacus B4]
          Length = 561

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 5/76 (6%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + C     C A+CP   I          G  R     ID + CI CG C +ACP
Sbjct: 1   MAHVVTQSCCNDASCVAVCPVDCIHPTPNE---PGYGRAEMLYIDPVGCIDCGACIDACP 57

Query: 115 VDAIVEGPNFEFATET 130
           VDAI+  P+++   ET
Sbjct: 58  VDAIL--PDYDLTPET 71


>gi|52548542|gb|AAU82391.1| formate hydrogenlyase subunit 6/NADH-ubiquinone oxidoreductase 23
           kD subunit [uncultured archaeon GZfos17C7]
 gi|52549750|gb|AAU83599.1| formate hydrogenlyase subunit 6/NADH-ubiquinone oxidoreductase 23
           kD subunit [uncultured archaeon GZfos32E4]
 gi|52550198|gb|AAU84047.1| formate hydrogenlyase subunit 6/NADH-ubiquinone oxidoreductase 23
           kD subunit [uncultured archaeon GZfos36D8]
          Length = 250

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 11/111 (9%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
           T+ YP E+   S  FRG           ++CI+C  C  +CPA AI ++  P       +
Sbjct: 41  TVFYPRERKKMSDNFRGFILF-----DPDKCISCFNCSFVCPANAIRMKEAPN------K 89

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLN 143
                ID  +CI+C  C ++C   A+      + A +   E++   E ++ 
Sbjct: 90  RYYPTIDYGRCIFCHFCIDSCSGGALKATKIHDVAYKDMDEMFTPTEEMIE 140



 Score = 41.6 bits (96), Expect = 0.039,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 7/61 (11%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +         CI C++CE +C + AI+  +           +R  ID  KC  CGLC + 
Sbjct: 184 MVSQCIDRASCIGCRVCEEMCESGAISSSAE-------NGMLRMKIDTDKCTGCGLCVKE 236

Query: 113 C 113
           C
Sbjct: 237 C 237


>gi|400072|sp|P30826|NDUS8_TRYBB RecName: Full=NADH-ubiquinone oxidoreductase subunit 8; AltName:
           Full=Maxicircle iron-sulfur protein 1
 gi|552291|gb|AAA91499.1| NADH dehydrogenase subunit 8 [Trypanosoma brucei]
          Length = 145

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/90 (42%), Positives = 46/90 (51%), Gaps = 1/90 (1%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            TI  P E    S   RG H LR Y  G ERCIAC+LC+ ICP+ A+ +  G     G R
Sbjct: 22  VTICLPIELTIVSLLVRGNHFLRFYWCGLERCIACRLCDLICPSLALDVRVGWSFG-GHR 80

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
               + +   +CIYCG C   CP DAI   
Sbjct: 81  FADWFTLSYRRCIYCGFCMHVCPTDAITHS 110


>gi|258516935|ref|YP_003193157.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257780640|gb|ACV64534.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 677

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/101 (32%), Positives = 43/101 (42%), Gaps = 14/101 (13%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            LR FF+ +   +   +             L  Y   E++CIAC +C   CP  AI+   
Sbjct: 540 TLR-FFRDEYIAHIRDKHCPAGVC----KDLLHYLVLEDQCIACGICAKACPVDAIS--- 591

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                 G R+   Y ID  KCI CG C E CP D I+ G  
Sbjct: 592 ------GERKKPPYKIDPEKCIRCGACMEKCPKDVIIRGSI 626


>gi|147919860|ref|YP_686389.1| ech hydrogenase, subunit F [uncultured methanogenic archaeon RC-I]
 gi|110621785|emb|CAJ37063.1| Ech hydrogenase, subunit F [uncultured methanogenic archaeon RC-I]
          Length = 150

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/124 (24%), Positives = 45/124 (36%), Gaps = 17/124 (13%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +      ++  F    T NYP+      P  R +           +CI C LC+  CP 
Sbjct: 1   MLKILENIVKNAFSPVYTSNYPYTPYQHFPGTRADVTF-----DGTKCILCGLCQRSCPP 55

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL- 134
           + I I                +    +CI CG C   CP +AIV+   +     +R+ L 
Sbjct: 56  ECIIIHKEKEE---------IEYLNTQCIRCGYCVRVCPTNAIVQNEVY--TKPSRERLT 104

Query: 135 YYDK 138
            Y K
Sbjct: 105 IYTK 108


>gi|254974321|ref|ZP_05270793.1| putative reductase [Clostridium difficile QCD-66c26]
 gi|255091717|ref|ZP_05321195.1| putative reductase [Clostridium difficile CIP 107932]
 gi|255313445|ref|ZP_05355028.1| putative reductase [Clostridium difficile QCD-76w55]
 gi|255516133|ref|ZP_05383809.1| putative reductase [Clostridium difficile QCD-97b34]
 gi|255649229|ref|ZP_05396131.1| putative reductase [Clostridium difficile QCD-37x79]
 gi|260682403|ref|YP_003213688.1| putative reductase [Clostridium difficile CD196]
 gi|260686002|ref|YP_003217135.1| putative reductase [Clostridium difficile R20291]
 gi|306519331|ref|ZP_07405678.1| putative reductase [Clostridium difficile QCD-32g58]
 gi|260208566|emb|CBA61245.1| putative reductase [Clostridium difficile CD196]
 gi|260212018|emb|CBE02566.1| putative reductase [Clostridium difficile R20291]
          Length = 273

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 38/107 (35%), Gaps = 14/107 (13%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 E+C+ C +CE+ C   AI ++                     CI CG C   CP
Sbjct: 1   MIDINLEKCVGCGMCESDCLVNAIKVKDDKAKVKNI-----------LCINCGHCMAICP 49

Query: 115 VDAIVEG--PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
            DAI        E     R+    + E+LL N  ++   I +    +
Sbjct: 50  TDAIEMQGFDKNEVIEYNRESFELEPEKLL-NFIKFRRSIRQYKDIE 95


>gi|317154073|ref|YP_004122121.1| hypothetical protein Daes_2370 [Desulfovibrio aespoeensis Aspo-2]
 gi|316944324|gb|ADU63375.1| hypothetical protein Daes_2370 [Desulfovibrio aespoeensis Aspo-2]
          Length = 146

 Score = 59.3 bits (142), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 14/103 (13%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
             +    +   T  YPF      P +RGE  +       + CI C  C   CP+Q I ++
Sbjct: 6   TVIMNLLRKPATRQYPFTVRDPFPNYRGELYI-----DIDGCIFCGTCARKCPSQCIEVD 60

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
                         +  D   C+YCG+C++ CP   +      
Sbjct: 61  KE---------QGLWTCDPHACVYCGICRDTCPTKCLHMKDVH 94


>gi|153006624|ref|YP_001380949.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Anaeromyxobacter sp.
           Fw109-5]
 gi|152030197|gb|ABS27965.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Anaeromyxobacter sp.
           Fw109-5]
          Length = 256

 Score = 59.0 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 39/104 (37%), Gaps = 16/104 (15%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERC-IACKLCEAICPAQAITIESGPRCHDGTR 91
           T+ +P        RFRG   +        RC   C  C   CP +AI             
Sbjct: 15  TVAFPDGPAKFPARFRGRPVV-----DPARCADGCADCAERCPTEAILDPGRASMA---- 65

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
                 +D+ +C++CG C EACP  A+    +   A   R+ L 
Sbjct: 66  ------VDLGRCLFCGECAEACPSGALRFTNDHRLAARDREALV 103


>gi|303247448|ref|ZP_07333720.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
           fructosovorans JJ]
 gi|302491144|gb|EFL51036.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio
           fructosovorans JJ]
          Length = 253

 Score = 59.0 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 15/118 (12%)

Query: 19  AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78
            F + L    + + T+ +P       PR+RG   L         C A  +C  +CP  A+
Sbjct: 1   MFRILLERLQQGRRTVAFPKSLPPLPPRYRGRPELV-DGPCVSDCKA--VCAGLCPTGAL 57

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
             +                +D+ +CI CG C  ACP   +    +   A+ +R+ L  
Sbjct: 58  GFDHDG-----------LYLDLGRCILCGACA-ACPGGRVRFTGDHRLASTSREGLIL 103


>gi|126698285|ref|YP_001087182.1| putative reductase [Clostridium difficile 630]
 gi|115249722|emb|CAJ67539.1| putative nitroreductase [Clostridium difficile]
          Length = 273

 Score = 59.0 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 38/107 (35%), Gaps = 14/107 (13%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 E+C+ C +CE+ C   AI ++                     CI CG C   CP
Sbjct: 1   MIDINLEKCVGCGMCESDCLVNAIKVKDDKAKVKNI-----------LCINCGHCMAICP 49

Query: 115 VDAIVEG--PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
            DAI        E     R+    + E+LL N  ++   I +    +
Sbjct: 50  TDAIEMQGFDKNEVIEYNRETFELEPEKLL-NFIKFRRSIRQYKDIE 95


>gi|317485984|ref|ZP_07944839.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
 gi|316922757|gb|EFV43988.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
          Length = 279

 Score = 59.0 bits (141), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 34/108 (31%), Gaps = 10/108 (9%)

Query: 20  FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79
             +      K   T  +PF +  T  R RG   +         C+ C  C  +C A AI 
Sbjct: 4   LKILWDNLKKGPVTDAFPFGETYTPDRLRGRVEI-----DPALCVGCGTCVHVCAAGAIN 58

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           I                 +    C  C  C+  CP  A+    ++  A
Sbjct: 59  ISKFEDGSG-----FEITVWRNSCCLCAQCRHYCPTKAVTLTNDWHSA 101


>gi|169831264|ref|YP_001717246.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Candidatus Desulforudis audaxviator MP104C]
 gi|169638108|gb|ACA59614.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 126

 Score = 58.6 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 39/96 (40%), Gaps = 10/96 (10%)

Query: 25  RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84
           +    +  T  YPFEK +  P  RG   +         C  C LCE +CP+QAI      
Sbjct: 10  KNLAGSPATRKYPFEKRAYFPGARGRLEI-----DFLTCGYCGLCERVCPSQAIKKIGDK 64

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           +  D T     +      CIYCG C E C   A+  
Sbjct: 65  KDPDVTILYKPF-----ACIYCGRCVEVCKFGAVQI 95


>gi|288574135|ref|ZP_06392492.1| Cobyrinic acid ac-diamide synthase [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288569876|gb|EFC91433.1| Cobyrinic acid ac-diamide synthase [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 286

 Score = 58.6 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 29/114 (25%), Positives = 37/114 (32%), Gaps = 22/114 (19%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P E+            +      EE CI C  C   C   A+ +  G             
Sbjct: 49  PKEQEEIP-----FMGMDGAEVDEETCIGCGKCRDFCRFDAVAMVDGKA----------- 92

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGP----NFEFATETRQELYYDKERLLNNGD 146
            I   KC  C  C   CPV AI   P    N+  A   + +L Y   RL   G+
Sbjct: 93  RIRQGKCEGCAGCTMVCPVQAISMVPRRQGNWYKADTGKGKLVY--ARLYPGGE 144


>gi|154149578|ref|YP_001403196.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Candidatus Methanoregula boonei 6A8]
 gi|153998130|gb|ABS54553.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methanoregula boonei 6A8]
          Length = 132

 Score = 58.6 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 14/112 (12%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80
              L+  F    T+ YP +    +   RG   +       E+CIAC+ C+  CP QAI +
Sbjct: 8   KTVLKSLFSRPATLMYPAKPAKKAALTRGHVTIV-----PEKCIACRTCQRKCPTQAIIV 62

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           +   +          + ID ++CI C  C E CP   +     +  +   R 
Sbjct: 63  DVKEKT---------WQIDRLRCIVCNCCVETCPTKCLAMDTQYYESMTARG 105


>gi|21228427|ref|NP_634349.1| ech hydrogenase subunit [Methanosarcina mazei Go1]
 gi|20906904|gb|AAM32021.1| Ech Hydrogenase, Subunit [Methanosarcina mazei Go1]
          Length = 126

 Score = 58.6 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 30/107 (28%), Positives = 42/107 (39%), Gaps = 14/107 (13%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           +G   L L        T  YPFE   T   F+G   +       E CI C LC+  CP  
Sbjct: 4   MGMLNLVLSNISHKPATRLYPFEIRETYKEFKGRIVI-----NPENCILCGLCQKKCPPD 58

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           AIT+    +          ++I++ +CI C  C   CP D +     
Sbjct: 59  AITVTKADKT---------WEINLFRCIMCTECVTGCPKDCLSISNE 96


>gi|307353715|ref|YP_003894766.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanoplanus petrolearius DSM 11571]
 gi|307156948|gb|ADN36328.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanoplanus
           petrolearius DSM 11571]
          Length = 134

 Score = 58.6 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/139 (23%), Positives = 47/139 (33%), Gaps = 36/139 (25%)

Query: 15  EFVGAFFLCLRYFFKAKTTINYPFE----------------------KGSTSPRFRGEHA 52
            F+      L+   K   T  +P +                         T   FRG+  
Sbjct: 2   SFLPTMVEVLKQILKKPATNLFPAKYLPKSITGFLGKVAEGKAEINPPVPTPENFRGKI- 60

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
                   + CI CK+C  +CPA AI      +            I + +CI+C  C +A
Sbjct: 61  ----TYDRDICIGCKICTRVCPANAIEFIKETKTV---------RIYVTQCIFCSQCNDA 107

Query: 113 CPVDAIVEGPNFEFATETR 131
           CPV  +    +F  A E R
Sbjct: 108 CPVHCLHMSEDFLLADEDR 126


>gi|170290729|ref|YP_001737545.1| heterodisulfide reductase, subunit A [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170174809|gb|ACB07862.1| Heterodisulfide reductase, subunit A [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 656

 Score = 58.6 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 32/127 (25%), Positives = 41/127 (32%), Gaps = 7/127 (5%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M +       L  +E V      ++   K K   N    K   S        +R+     
Sbjct: 192 MGVLNWEGRRLSGREIVRTLIKMVKDNPKIKVYTNSEVVKVDGSIGNFKITVMRKPRYVN 251

Query: 61  ERCIACKLCEAICPAQAITIE-------SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           ERC  C  CE +CP                           RY ID   C +CG C E C
Sbjct: 252 ERCNLCGKCEEVCPVSVPDEYEYGIKKRKAIYLPYSGAYPERYVIDPNSCTFCGKCVEVC 311

Query: 114 PVDAIVE 120
           PV+AI  
Sbjct: 312 PVNAIDL 318



 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 6/61 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E +C  C +C +ICP  AI+++        ++      ID + C  CG C  ACP  AI
Sbjct: 583 DESKCSGCGICVSICPFNAISMQKREDGTRYSK------IDPLLCEGCGTCVAACPSAAI 636

Query: 119 V 119
            
Sbjct: 637 Q 637



 Score = 39.7 bits (91), Expect = 0.12,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           ++D  KC  CG+C   CP +AI      +    ++
Sbjct: 581 EVDESKCSGCGICVSICPFNAISMQKREDGTRYSK 615


>gi|41033685|emb|CAF18509.1| putative 2-oxoglutarate synthase, 2-oxoacid-ferredoxin
           oxidoreductases delta subunit [Thermoproteus tenax]
          Length = 102

 Score = 58.6 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 32/65 (49%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +ERCI C++C   CP   I    G     G +  V+Y+ID   C  CG+C   CPV AI
Sbjct: 37  HDERCIRCRVCWMYCPEGTIKEVRGEFVVKGHKYQVKYEIDYNYCKGCGICAHECPVKAI 96

Query: 119 VEGPN 123
              P 
Sbjct: 97  EMVPE 101


>gi|45359026|ref|NP_988583.1| polyferredoxin [Methanococcus maripaludis S2]
 gi|45047901|emb|CAF31019.1| polyferredoxin [Methanococcus maripaludis S2]
          Length = 393

 Score = 58.6 bits (140), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 14/113 (12%)

Query: 9   SFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKL 68
           S  +L EFV       + +F   T      E      RFR    +    +  E+CI+C  
Sbjct: 4   SIWYLYEFVR------KKWFMRFTNAKSEKESFIPPERFRKIPVI---FDLPEKCISCSA 54

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           C+  CP+ AI++E          +      D   CI CG C E+CP + +  G
Sbjct: 55  CKESCPSDAISMEFNEEF-----KKEMPVFDAGSCINCGNCVESCPTNVLEMG 102



 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 29/84 (34%), Gaps = 4/84 (4%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI----ESGPRCHDGTRRTVRYDI 98
            S  F  E            CI C  C   CP   + +    +          + +   I
Sbjct: 64  ISMEFNEEFKKEMPVFDAGSCINCGNCVESCPTNVLEMGTLRKEAKELLWNVPKIINLLI 123

Query: 99  DMIKCIYCGLCQEACPVDAIVEGP 122
           D   C+ CG C+ ACPVDAI    
Sbjct: 124 DEEVCVSCGTCENACPVDAISHNN 147



 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 17/104 (16%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            Y   EE+CI C++C   C          P     ++ T    I+   C+ CGLCQ ACP
Sbjct: 275 CYIVDEEKCIGCRICYRSCNV--------PEAILISKETNLPYINPEYCVRCGLCQNACP 326

Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158
           VDAI         TET ++L Y K +     D +ES +  ++  
Sbjct: 327 VDAIDY-----LKTETSEDL-YSKRK---IRDEFESILHSDLEE 361



 Score = 40.5 bits (93), Expect = 0.081,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 13/94 (13%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             +      EE C++C  CE  CP  AI+  +          T  Y+ID+  C+ C  C 
Sbjct: 116 PKIINLLIDEEVCVSCGTCENACPVDAISHNN----------TGLYEIDVNLCVSCKNCL 165

Query: 111 EACPV-DAIVEGPNFEFAT--ETRQELYYDKERL 141
           +ACPV +AIV     E +   E  Q + +D+ERL
Sbjct: 166 KACPVENAIVTYSEPELSEKIEIAQNIKFDRERL 199



 Score = 37.4 bits (85), Expect = 0.73,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 24/60 (40%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
             +    A + +      +  R+         KCI C  C+E+CP DAI    N EF  E
Sbjct: 16  WFMRFTNAKSEKESFIPPERFRKIPVIFDLPEKCISCSACKESCPSDAISMEFNEEFKKE 75



 Score = 34.7 bits (78), Expect = 4.4,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 22/82 (26%), Gaps = 23/82 (28%)

Query: 56  YPNGEERCIACKLCEAICPA-QAITIESGPR----------------------CHDGTRR 92
           Y      C++CK C   CP   AI   S P                              
Sbjct: 151 YEIDVNLCVSCKNCLKACPVENAIVTYSEPELSEKIEIAQNIKFDRERLGSEFKEKSDVI 210

Query: 93  TVRYDIDMIKCIYCGLCQEACP 114
                I    CI CG C + CP
Sbjct: 211 AEIPRIVPSLCIGCGNCVDVCP 232


>gi|218883496|ref|YP_002427878.1| dihydroorotate dehydrogenase family protein [Desulfurococcus
           kamchatkensis 1221n]
 gi|218765112|gb|ACL10511.1| dihydroorotate dehydrogenase family protein [Desulfurococcus
           kamchatkensis 1221n]
          Length = 407

 Score = 58.2 bits (139), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 7/62 (11%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E++CI C  CE +C   A+ +E         +R  R +I   KC  CGLC   CP  AI
Sbjct: 350 DEKKCIGCGFCEQVCNYDAVHVE-----ESSGKRVARVNIM--KCYGCGLCTSVCPTRAI 402

Query: 119 VE 120
             
Sbjct: 403 HF 404



 Score = 34.7 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 15/35 (42%)

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           +            +D  KCI CG C++ C  DA+ 
Sbjct: 336 KPEPRRVWAQPPVVDEKKCIGCGFCEQVCNYDAVH 370


>gi|317128887|ref|YP_004095169.1| pyruvate/ketoisovalerate oxidoreductase, subunit gamma [Bacillus
           cellulosilyticus DSM 2522]
 gi|315473835|gb|ADU30438.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit [Bacillus
           cellulosilyticus DSM 2522]
          Length = 337

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 2/75 (2%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
                CI C  C+ +CP      E G     G ++     ID   C  C  C +ACP +A
Sbjct: 251 YDSNTCIHCAACDTVCPDYCFVWEEGED-KRGRKQMFLKGIDYQYCKGCLKCVDACPTEA 309

Query: 118 IV-EGPNFEFATETR 131
           +        +A E R
Sbjct: 310 LQDMIEELGYAEENR 324


>gi|126459791|ref|YP_001056069.1| thiamine pyrophosphate binding domain-containing protein
           [Pyrobaculum calidifontis JCM 11548]
 gi|126249512|gb|ABO08603.1| thiamine pyrophosphate enzyme domain protein TPP-binding
           [Pyrobaculum calidifontis JCM 11548]
          Length = 593

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 10/71 (14%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R    L RY    ++C++C +C  +    AI+  SG +            ID   C+ CG
Sbjct: 517 RSGVRLPRYFVDVDKCVSCGICYNVLKCSAISKASGGKA----------YIDPALCVGCG 566

Query: 108 LCQEACPVDAI 118
           +C E CPV AI
Sbjct: 567 VCAEVCPVGAI 577


>gi|48478111|ref|YP_023817.1| formate dehydrogenase alpha chain [Picrophilus torridus DSM 9790]
 gi|48430759|gb|AAT43624.1| formate dehydrogenase alpha chain [Picrophilus torridus DSM 9790]
          Length = 976

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 39/105 (37%), Gaps = 11/105 (10%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQE 111
            Y      CI C  C   C    +             R V  D   I+   C+ CG C  
Sbjct: 137 FYRYDPNECILCGRCVEACQDVEVNETIHIDWTLERPRVVWDDGKMINESSCVSCGHCVT 196

Query: 112 ACPVDAIVEGPNFEFATE----TRQELYYDKERLLNNGDRWESEI 152
            CPV+A++E    E A      TR+     KE L++ G   E ++
Sbjct: 197 VCPVNALMEKSMLEEAGYFTSLTRKA----KESLIDFGKNLEDQL 237



 Score = 37.8 bits (86), Expect = 0.52,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 20/69 (28%), Gaps = 9/69 (13%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQA-----ITIESGPRCHDGTRRTVRYDIDMIKCI 104
           R        C  C      C       +        +   + ++       Y  D  +CI
Sbjct: 87  RLLREHNLHCTVCENNNGDCALHNAVDSSGLERQKYKYEKKPYEIDDSNPFYRYDPNECI 146

Query: 105 YCGLCQEAC 113
            CG C EAC
Sbjct: 147 LCGRCVEAC 155


>gi|212690609|ref|ZP_03298737.1| hypothetical protein BACDOR_00095 [Bacteroides dorei DSM 17855]
 gi|212666855|gb|EEB27427.1| hypothetical protein BACDOR_00095 [Bacteroides dorei DSM 17855]
          Length = 582

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQ 110
               + CI+C +C   CP  AI     P       +           ID  KCIYCG C 
Sbjct: 245 WIDHDTCISCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDENKCIYCGKCM 304

Query: 111 EACPVDAIVE 120
            ACP  AI E
Sbjct: 305 NACPFGAIFE 314



 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIACK--LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           +      + C  C    C+  CP  A+ + +               ID   CI CG+C +
Sbjct: 209 QINYEITDLCRGCTARSCQYNCPKGAVHVHADTGKAW---------IDHDTCISCGICHK 259

Query: 112 ACPVDAIVEGP 122
           +CP  AIV  P
Sbjct: 260 SCPYHAIVYIP 270


>gi|126178309|ref|YP_001046274.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanoculleus marisnigri JR1]
 gi|125861103|gb|ABN56292.1| ech hydrogenase subunit F [Methanoculleus marisnigri JR1]
          Length = 137

 Score = 58.2 bits (139), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 14/116 (12%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                   LR       T  YP     +    RG             C +C LC   CP 
Sbjct: 3   IFQMTKTVLRNLAGGPATRQYPAVPARSCSLTRGHIVF-----DPATCRSCSLCVKRCPC 57

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           +AI ++   +          ++ID ++CI CG C E CP  ++    ++       
Sbjct: 58  EAIRLDKEAK---------VWEIDRMRCIACGDCVEGCPFGSLTMEQSYHPPVTEH 104


>gi|125972862|ref|YP_001036772.1| NADH dehydrogenase (quinone) [Clostridium thermocellum ATCC 27405]
 gi|256005732|ref|ZP_05430687.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 2360]
 gi|281417061|ref|ZP_06248081.1| NADH dehydrogenase (quinone) [Clostridium thermocellum JW20]
 gi|125713087|gb|ABN51579.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Clostridium thermocellum ATCC 27405]
 gi|255990305|gb|EEU00432.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 2360]
 gi|281408463|gb|EFB38721.1| NADH dehydrogenase (quinone) [Clostridium thermocellum JW20]
 gi|316940900|gb|ADU74934.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 1313]
          Length = 597

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 10/68 (14%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            AL  Y    E+C +C +C   CP +AI+ E          + V Y ID  KCI CG+C 
Sbjct: 536 KALMHYEIDAEKCKSCGICARQCPVKAISGE----------KKVPYVIDQNKCIKCGVCM 585

Query: 111 EACPVDAI 118
           E CP  AI
Sbjct: 586 EKCPFKAI 593


>gi|150399525|ref|YP_001323292.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus vannielii SB]
 gi|150012228|gb|ABR54680.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           vannielii SB]
          Length = 394

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 46/113 (40%), Gaps = 14/113 (12%)

Query: 9   SFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKL 68
           S  +L EFV       + +FK  T      E      RFR         +  E+CI+C  
Sbjct: 4   SIWYLYEFVR------KKWFKKFTNAKSEKESYIEPERFRKIPV---TVDFPEKCISCSA 54

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           C   CP+ AI ++     +      +  D D   CI CG C E+CP + +  G
Sbjct: 55  CAESCPSDAILMKHNEEYNR-----IMPDFDDGSCINCGNCVESCPTEVLEMG 102



 Score = 40.1 bits (92), Expect = 0.094,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 8/67 (11%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           + +   +++CI C++C   C          P   + ++ T    ID I C+ CG+C+  C
Sbjct: 274 KCHTINDKKCIGCRICYKSCNV--------PNALNISKETNLPYIDPIYCVRCGICENVC 325

Query: 114 PVDAIVE 120
           PVDA+  
Sbjct: 326 PVDAVDI 332



 Score = 38.9 bits (89), Expect = 0.21,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 10/70 (14%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                  E C++C  CE +CP  AI+            R   Y ID+  C+ C  C ++C
Sbjct: 119 INLVIDSEVCVSCSSCEKVCPVDAISHN----------RFSIYKIDVNSCVSCKKCIDSC 168

Query: 114 PVDAIVEGPN 123
           PV+  +   +
Sbjct: 169 PVENAILTYD 178



 Score = 38.9 bits (89), Expect = 0.22,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 22/53 (41%)

Query: 74  PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
              A + +      +  R+         KCI C  C E+CP DAI+   N E+
Sbjct: 20  FTNAKSEKESYIEPERFRKIPVTVDFPEKCISCSACAESCPSDAILMKHNEEY 72



 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           C+ C  C ++CP  AI   +  +    T++   + I+  KCI C +C ++C
Sbjct: 245 CVKCGHCLSVCPTSAIRTGTLAKITKNTKKC--HTINDKKCIGCRICYKSC 293


>gi|332295480|ref|YP_004437403.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermodesulfobium narugense DSM 14796]
 gi|332178583|gb|AEE14272.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermodesulfobium narugense DSM 14796]
          Length = 157

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/132 (25%), Positives = 50/132 (37%), Gaps = 13/132 (9%)

Query: 22  LCLRYFFKAKTTINYPFEKGST-SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80
           + +   FK   T +            F G        +   RCIAC +C+  CPA+ I I
Sbjct: 7   ILIENIFKPPITEDISSVNLPKHPKGFHGHPE-----HDPTRCIACGICQYFCPAKVIKI 61

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140
                        + Y +D+ +C  CG C + CP +AI   PN  F T    +   D + 
Sbjct: 62  SQIDDK-------INYHMDLDQCTCCGQCIDYCPTNAIKHRPNPYFVTTNLDDFKVDHQI 114

Query: 141 LLNNGDRWESEI 152
            L    +  + I
Sbjct: 115 NLIKCAKCGAFI 126


>gi|150002944|ref|YP_001297688.1| putative hydrogenase [Bacteroides vulgatus ATCC 8482]
 gi|149931368|gb|ABR38066.1| putative hydrogenase [Bacteroides vulgatus ATCC 8482]
          Length = 583

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQ 110
               + CI+C +C   CP  AI     P       +           ID  KCIYCG C 
Sbjct: 245 WIDHDTCISCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDENKCIYCGKCM 304

Query: 111 EACPVDAIVE 120
            ACP  AI E
Sbjct: 305 NACPFGAIFE 314



 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIACK--LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           +      + C  C    C+  CP  A+ + +               ID   CI CG+C +
Sbjct: 209 QINYEITDLCRGCTARSCQYNCPKGAVHVHADTGKAW---------IDHDTCISCGICHK 259

Query: 112 ACPVDAIVEGP 122
           +CP  AIV  P
Sbjct: 260 SCPYHAIVYIP 270


>gi|326331682|ref|ZP_08197970.1| ferredoxin--NADP reductase [Nocardioidaceae bacterium Broad-1]
 gi|325950481|gb|EGD42533.1| ferredoxin--NADP reductase [Nocardioidaceae bacterium Broad-1]
          Length = 536

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C     C  +CP   I          G        I   +CI CG C++ACPV+AI  
Sbjct: 7   QSCCNDASCVEVCPVDCIHPGPDE---PGFGAAEMLYIHPDECIDCGACEDACPVNAIF- 62

Query: 121 GPNFEFAT 128
            P++E   
Sbjct: 63  -PDYEVPD 69


>gi|255016559|ref|ZP_05288685.1| putative hydrogenase [Bacteroides sp. 2_1_7]
 gi|256842203|ref|ZP_05547707.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262384870|ref|ZP_06078002.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|298377650|ref|ZP_06987601.1| Fe-hydrogenase large subunit family protein [Bacteroides sp.
           3_1_19]
 gi|301308948|ref|ZP_07214893.1| Fe-hydrogenase large subunit family protein [Bacteroides sp. 20_3]
 gi|256736087|gb|EEU49417.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|262293586|gb|EEY81522.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|298265353|gb|EFI07015.1| Fe-hydrogenase large subunit family protein [Bacteroides sp.
           3_1_19]
 gi|300832974|gb|EFK63599.1| Fe-hydrogenase large subunit family protein [Bacteroides sp. 20_3]
          Length = 478

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 36/93 (38%), Gaps = 12/93 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQEA 112
             E CI+C  C   CP  AI     P       +           ID  KCIYCG C  A
Sbjct: 148 DHETCISCGKCHQSCPYHAIVYIPIPCEEVCPVKAISKDEYGVEHIDESKCIYCGKCVNA 207

Query: 113 CPVDAIVE-GPNFEFATETRQELYYDKERLLNN 144
           CP  AI E    F+     R     +KE+++  
Sbjct: 208 CPFGAIFEISQVFDILQRLR-----NKEQMVAI 235



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 30/98 (30%), Gaps = 12/98 (12%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------------ITIESGPR 85
            E    S   +              C+  + C +                      + P+
Sbjct: 75  DELTPLSEYAKRALFRSENKKENIMCVVDEACSSCVSVNYEITNLCRGCVARSCYMNCPK 134

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                ++  + +ID   CI CG C ++CP  AIV  P 
Sbjct: 135 DAIRFKKNGQAEIDHETCISCGKCHQSCPYHAIVYIPI 172


>gi|150006680|ref|YP_001301423.1| putative hydrogenase [Parabacteroides distasonis ATCC 8503]
 gi|149935104|gb|ABR41801.1| putative hydrogenase [Parabacteroides distasonis ATCC 8503]
          Length = 478

 Score = 57.8 bits (138), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 36/93 (38%), Gaps = 12/93 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQEA 112
             E CI+C  C   CP  AI     P       +           ID  KCIYCG C  A
Sbjct: 148 DHETCISCGKCHQSCPYHAIVYIPIPCEEVCPVKAISKDKYGVEHIDESKCIYCGKCVNA 207

Query: 113 CPVDAIVE-GPNFEFATETRQELYYDKERLLNN 144
           CP  AI E    F+     R     +KE+++  
Sbjct: 208 CPFGAIFEISQVFDILQRLR-----NKEQMVAI 235



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 30/98 (30%), Gaps = 12/98 (12%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------------ITIESGPR 85
            E    S   +              C+  + C +                      + P+
Sbjct: 75  DELTPLSEYAKRALFRSENKKENIMCVVDEACSSCVSVNYEITNLCRGCVARSCYMNCPK 134

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                ++  + +ID   CI CG C ++CP  AIV  P 
Sbjct: 135 DAIRFKKNGQAEIDHETCISCGKCHQSCPYHAIVYIPI 172


>gi|327311337|ref|YP_004338234.1| pyruvate/ketoisovalerate oxidoreductase subunit delta
           [Thermoproteus uzoniensis 768-20]
 gi|326947816|gb|AEA12922.1| pyruvate/ketoisovalerate oxidoreductase, delta subunit
           [Thermoproteus uzoniensis 768-20]
          Length = 102

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 30/65 (46%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++RCI C++C   CP   I    G     G +   +Y+ID   C  CG+C   CP  AI
Sbjct: 37  HDDRCIRCRICWTYCPEGTIKEIKGEFVVKGRKYQYKYEIDYNYCKGCGICAHECPTKAI 96

Query: 119 VEGPN 123
              P 
Sbjct: 97  EMVPE 101


>gi|197119557|ref|YP_002139984.1| Ech-hydrogenase-like complex small subunit [Geobacter bemidjiensis
           Bem]
 gi|197088917|gb|ACH40188.1| Ech-hydrogenase-related complex, small subunit [Geobacter
           bemidjiensis Bem]
          Length = 252

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/126 (24%), Positives = 48/126 (38%), Gaps = 24/126 (19%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
           T+ YP E  +   RFRG   ++     ++    C+ C   CP  A+  +       G   
Sbjct: 15  TMAYPREPLALPERFRGYPEIKADLCPKD----CRACADACPVDALECQPDLSLDLG--- 67

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEI 152
                    KC++C  C  ACP  AI   P+   A   R+EL       +  GD  E  +
Sbjct: 68  ---------KCLFCPECSRACPQGAITHTPDARLAANHREELV------VRPGD--EHRL 110

Query: 153 VRNIVT 158
            + +  
Sbjct: 111 AQALEK 116


>gi|218885304|ref|YP_002434625.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218756258|gb|ACL07157.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 491

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 17/102 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
                 C  C LCE  CP  A+++   P    G +R  R  +D   C+ CG C   CP  
Sbjct: 353 RCDASLCNGCGLCERACPVDAVSL---PVPPGGRKRDRRCAVDEAYCLGCGACALKCPTG 409

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158
           A+   P        R+       ++L+  D +E  I++++  
Sbjct: 410 ALRLHP--------RER------KVLHPADSFERVILQSLER 437


>gi|3005972|emb|CAA76122.1| echF [Methanosarcina barkeri]
          Length = 122

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 40/107 (37%), Gaps = 14/107 (13%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           +G   L L    +   T  YPFE       F+G           E CI C LC+  CP  
Sbjct: 1   MGMLNLVLTNISRKPATRLYPFEIREPFKEFKGRIVF-----DPENCILCGLCQKKCPPD 55

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           AIT+    +          +++++ +CI C  C   CP   +     
Sbjct: 56  AITVTKADKT---------WELNLFRCIMCTECVNGCPKGCLSISNE 93


>gi|290967889|ref|ZP_06559439.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Megasphaera
           genomosp. type_1 str. 28L]
 gi|290782028|gb|EFD94606.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Megasphaera
           genomosp. type_1 str. 28L]
          Length = 1173

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 43/113 (38%), Gaps = 15/113 (13%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT---------------IESGPRCH 87
           TS   +   AL       E+CI C  C  +CP   I                 +  P+  
Sbjct: 668 TSKYEKAAPALHVPSWDAEKCIGCMQCSFVCPHATIRPSLTTKEETAAAPAGYKVAPKAR 727

Query: 88  DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140
            G +  V   +D   C+ CG C + CPVDA+   PN +      +  YY  E+
Sbjct: 728 AGKQYDVAIVVDQDDCLECGSCVDVCPVDALTMVPNVDTERAKMELWYYATEK 780


>gi|289596354|ref|YP_003483050.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Aciduliprofundum boonei T469]
 gi|289534141|gb|ADD08488.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Aciduliprofundum boonei T469]
          Length = 148

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 14/103 (13%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR-------TVR 95
           T P FRG+          + C+ C LC  +CP+ AI +    +      +        ++
Sbjct: 48  TPPGFRGKLE-----YDIDECVGCGLCAQVCPSHAIELVRDKKWIIMHCKEGAKLAAPLK 102

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR--QELYY 136
             I + +C++CG C + CP   +     F  A E +  ++L  
Sbjct: 103 IKIYVSRCVFCGQCVDVCPRKCLKMSDEFLLANEDKLAEDLII 145


>gi|256828363|ref|YP_003157091.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfomicrobium baculatum DSM 4028]
 gi|256577539|gb|ACU88675.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfomicrobium baculatum DSM 4028]
          Length = 425

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 16/101 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  C  C LC   CP  A+++E         R+  +       C+ CG+C   CP  AI
Sbjct: 288 DETLCTGCGLCAKACPVNAVSVE--KISGQDARKPKKLADMKEHCLGCGVCALKCPTGAI 345

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
                      +R +  Y  E      D +E  +++ +  D
Sbjct: 346 TLQ--------SRPQKVYHPE------DSFERVMLQALERD 372



 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 15/21 (71%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           +D   C  CGLC +ACPV+A+
Sbjct: 287 VDETLCTGCGLCAKACPVNAV 307


>gi|73667697|ref|YP_303712.1| ech hydrogenase subunit F [Methanosarcina barkeri str. Fusaro]
 gi|72394859|gb|AAZ69132.1| ech hydrogenase subunit F [Methanosarcina barkeri str. Fusaro]
          Length = 122

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 40/107 (37%), Gaps = 14/107 (13%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           +G   L L    +   T  YPFE       F+G           E CI C LC+  CP  
Sbjct: 1   MGMLNLVLTNISRKPATRLYPFEIREPFKEFKGRIVF-----DPENCILCGLCQKKCPPD 55

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           AIT+    +          +++++ +CI C  C   CP   +     
Sbjct: 56  AITVTKADKT---------WELNLFRCIMCTECVNGCPKGCLSISNE 93


>gi|291280504|ref|YP_003497339.1| ferredoxin-dependent glutamate synthase subunit beta [Deferribacter
           desulfuricans SSM1]
 gi|290755206|dbj|BAI81583.1| ferredoxin-dependent glutamate synthase, beta subunit
           [Deferribacter desulfuricans SSM1]
          Length = 777

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 33/109 (30%), Gaps = 2/109 (1%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
                  L  F KA        +K           A +     ++RC++C  C      +
Sbjct: 666 FRGLS--LDDFKKAPVIPQDKMKKEYYPLLNPMAVAEKEPEFEKDRCMSCGFCRDCEMCK 723

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
            +  E           T  Y  D  KCI CG+C   CP        N E
Sbjct: 724 DVCPEQAIVRIQNDDGTFEYYSDPNKCIGCGICAGVCPCGIWTMIDNVE 772


>gi|257077352|ref|ZP_05571713.1| formate dehydrogenase alpha chain [Ferroplasma acidarmanus fer1]
          Length = 978

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 44/119 (36%), Gaps = 11/119 (9%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD--- 97
             TS  +  +++   Y    ++CI C  C   C    +             R V  D   
Sbjct: 125 PFTSKGYEPDYSNPFYRYDPDQCILCGRCVEACQDVEVNETLHIDWSLERPRVVWDDNKA 184

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE----TRQELYYDKERLLNNGDRWESEI 152
           I+   C+ CG C   CPV+A++E    E A      TR+     K  L+  G   E  +
Sbjct: 185 INDSSCVSCGHCVTVCPVNALMEKSMLEEAGYFTSLTRKA----KYNLIEFGKDLEKPV 239


>gi|312878987|ref|ZP_07738787.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260]
 gi|310782278|gb|EFQ22676.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260]
          Length = 597

 Score = 57.8 bits (138), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 30/97 (30%), Positives = 40/97 (41%), Gaps = 15/97 (15%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
             +RY F+ +   +   +K           AL  +     +CI C  C  +CP  AIT E
Sbjct: 513 TTIRY-FRHEYEAHIKDKKCPAGAC----VALTSFVIDPAKCIGCTKCARVCPVNAITGE 567

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                         + ID  KC+ CG C EACPV AI
Sbjct: 568 IKKP----------HVIDAEKCVKCGACAEACPVKAI 594


>gi|147677713|ref|YP_001211928.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit
           [Pelotomaculum thermopropionicum SI]
 gi|146273810|dbj|BAF59559.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit
           [Pelotomaculum thermopropionicum SI]
          Length = 650

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 39/97 (40%), Gaps = 15/97 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            LR+ F+ +   +   +            AL  Y   EERCIAC LC   C  QAI  E 
Sbjct: 541 TLRH-FRKEYIAHVMDKTCPAGVC----KALLDYRVDEERCIACGLCAKACTVQAIYGEP 595

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
                        Y ID  KC+ C  C   CP +AI+
Sbjct: 596 KKP----------YRIDPEKCVKCAACVARCPRNAIM 622



 Score = 37.8 bits (86), Expect = 0.51,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 20/52 (38%)

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                    +          +  + Y +D  +CI CGLC +AC V AI   P
Sbjct: 544 HFRKEYIAHVMDKTCPAGVCKALLDYRVDEERCIACGLCAKACTVQAIYGEP 595


>gi|282163147|ref|YP_003355532.1| Ech hydrogenase subunit F [Methanocella paludicola SANAE]
 gi|282155461|dbj|BAI60549.1| Ech hydrogenase subunit F [Methanocella paludicola SANAE]
          Length = 145

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/116 (23%), Positives = 41/116 (35%), Gaps = 14/116 (12%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +       +       T NYPF      P  R +           +CI C+LC+  CPA
Sbjct: 1   MLKILENIFKNITSKPYTSNYPFTPYQHFPGTRADVTF-----DGTKCILCQLCQRSCPA 55

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           + I I                +    +CI CG C   CP +AI +   +   ++ R
Sbjct: 56  ECIIIHKEE---------TTVEYLNTQCIRCGYCVRVCPTNAISQNEVYTKPSKER 102


>gi|298373293|ref|ZP_06983282.1| Fe-hydrogenase large subunit family protein [Bacteroidetes oral
           taxon 274 str. F0058]
 gi|298274345|gb|EFI15897.1| Fe-hydrogenase large subunit family protein [Bacteroidetes oral
           taxon 274 str. F0058]
          Length = 491

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110
               + CI+C +C   CP  AI     P       + +  D      ID  KCIYCG C 
Sbjct: 146 QIDHDACISCGICHQSCPYHAIVYIPVPCEESCPVKAISKDEFGIEHIDESKCIYCGKCI 205

Query: 111 EACPVDAIVE 120
            ACP  AI E
Sbjct: 206 NACPFGAIFE 215



 Score = 40.9 bits (94), Expect = 0.057,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 10/83 (12%)

Query: 48  RGEHALRRYPNGEERCIAC--------KLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           R           +E C +C         LC+        T    P+     ++  +  ID
Sbjct: 91  RERLKENILCVIDEACSSCVQINYEITNLCKGCVARGCYTNC--PKNAVHFQKNGQAQID 148

Query: 100 MIKCIYCGLCQEACPVDAIVEGP 122
              CI CG+C ++CP  AIV  P
Sbjct: 149 HDACISCGICHQSCPYHAIVYIP 171


>gi|154491696|ref|ZP_02031322.1| hypothetical protein PARMER_01307 [Parabacteroides merdae ATCC
           43184]
 gi|154087937|gb|EDN86982.1| hypothetical protein PARMER_01307 [Parabacteroides merdae ATCC
           43184]
          Length = 481

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 27/68 (39%), Gaps = 6/68 (8%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQEA 112
             + CI+C  C   CP  AI     P       +           ID  KCIYCG C  A
Sbjct: 148 DHDTCISCGKCHQNCPYHAIVYIPIPCEEVCPVKAISKDEYGVEHIDESKCIYCGKCVNA 207

Query: 113 CPVDAIVE 120
           CP  AI E
Sbjct: 208 CPFGAIFE 215



 Score = 38.9 bits (89), Expect = 0.25,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 29/98 (29%), Gaps = 12/98 (12%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------------ITIESGPR 85
            E    S   +              C+  + C +                      + P+
Sbjct: 75  DELTPLSEYAKQALLRSENKKENLMCVVDEACSSCVQVNYEITNLCRGCVARSCYMNCPK 134

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                ++  + +ID   CI CG C + CP  AIV  P 
Sbjct: 135 DAIRFKKNGQAEIDHDTCISCGKCHQNCPYHAIVYIPI 172


>gi|239942291|ref|ZP_04694228.1| putative ferredoxin reductase [Streptomyces roseosporus NRRL 15998]
 gi|239988757|ref|ZP_04709421.1| putative ferredoxin reductase [Streptomyces roseosporus NRRL 11379]
 gi|291445751|ref|ZP_06585141.1| ferredoxin-NADP+ reductase [Streptomyces roseosporus NRRL 15998]
 gi|291348698|gb|EFE75602.1| ferredoxin-NADP+ reductase [Streptomyces roseosporus NRRL 15998]
          Length = 556

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/92 (32%), Positives = 37/92 (40%), Gaps = 10/92 (10%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C     C A+CP   I      R       T    ID   CI CG C +ACPVDAI  
Sbjct: 7   QTCCNDATCVAVCPVNCIHPTPEERA---FGSTEMLHIDPRACIDCGACADACPVDAIF- 62

Query: 121 GPNFEFATETRQ-----ELYYDKERLLNNGDR 147
            P    +   R+       YY+ E  L+ GD 
Sbjct: 63  -PVDSLSAGQREYADINAAYYEGEEPLSVGDE 93


>gi|218264316|ref|ZP_03478173.1| hypothetical protein PRABACTJOHN_03864 [Parabacteroides johnsonii
           DSM 18315]
 gi|218222117|gb|EEC94767.1| hypothetical protein PRABACTJOHN_03864 [Parabacteroides johnsonii
           DSM 18315]
          Length = 481

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 27/68 (39%), Gaps = 6/68 (8%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQEA 112
             + CI+C  C   CP  AI     P       +           ID  KCIYCG C  A
Sbjct: 148 DHDTCISCGKCHQNCPYHAIVYIPIPCEEVCPVKAISKDEYGVEHIDESKCIYCGKCVNA 207

Query: 113 CPVDAIVE 120
           CP  AI E
Sbjct: 208 CPFGAIFE 215



 Score = 38.9 bits (89), Expect = 0.25,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 29/98 (29%), Gaps = 12/98 (12%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------------ITIESGPR 85
            E    S   +              C+  + C +                      + P+
Sbjct: 75  DELTPLSEYAKQALLRSENKKENLMCVVDEACSSCVQVNYEITNLCRGCVARSCYMNCPK 134

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                ++  + +ID   CI CG C + CP  AIV  P 
Sbjct: 135 DAIRFKKNGQAEIDHDTCISCGKCHQNCPYHAIVYIPI 172


>gi|126465150|ref|YP_001040259.1| dihydroorotate dehydrogenase family protein [Staphylothermus
           marinus F1]
 gi|126013973|gb|ABN69351.1| dihydroorotate dehydrogenase family protein [Staphylothermus
           marinus F1]
          Length = 406

 Score = 57.4 bits (137), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 6/67 (8%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++CI C  CE +C   A+ +                 ++   C  CGLC   CP  AI
Sbjct: 346 DPKKCIGCGFCEQVCDYNAVKVVPNEEGK------RIAQVNYDLCYGCGLCTSVCPTRAI 399

Query: 119 VEGPNFE 125
                 +
Sbjct: 400 HFEEELD 406



 Score = 37.4 bits (85), Expect = 0.68,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 18/41 (43%)

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           +            +D  KCI CG C++ C  +A+   PN E
Sbjct: 332 KPEPRRVWAKPPVVDPKKCIGCGFCEQVCDYNAVKVVPNEE 372


>gi|150016647|ref|YP_001308901.1| hydrogenase, Fe-only [Clostridium beijerinckii NCIMB 8052]
 gi|149903112|gb|ABR33945.1| hydrogenase, Fe-only [Clostridium beijerinckii NCIMB 8052]
          Length = 644

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 10/63 (15%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ++CI C  C+  CP   I  E   +            ID  +C +CG C  ACPVDAI  
Sbjct: 220 KKCIGCGACKRACPVDCINGELKKKHE----------IDYNRCTHCGACVSACPVDAISA 269

Query: 121 GPN 123
           G N
Sbjct: 270 GDN 272


>gi|237725194|ref|ZP_04555675.1| conserved hypothetical protein [Bacteroides sp. D4]
 gi|265754284|ref|ZP_06089473.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|229436460|gb|EEO46537.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
 gi|263234993|gb|EEZ20548.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 487

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQ 110
               + CI+C +C   CP  AI     P       +           ID  KCIYCG C 
Sbjct: 150 WIDHDTCISCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDENKCIYCGKCM 209

Query: 111 EACPVDAIVE 120
            ACP  AI E
Sbjct: 210 NACPFGAIFE 219



 Score = 39.3 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIACK--LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           +      + C  C    C+  CP  A+ + +               ID   CI CG+C +
Sbjct: 114 QINYEITDLCRGCTARSCQYNCPKGAVHVHADTGKAW---------IDHDTCISCGICHK 164

Query: 112 ACPVDAIVEGP 122
           +CP  AIV  P
Sbjct: 165 SCPYHAIVYIP 175


>gi|254884686|ref|ZP_05257396.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|254837479|gb|EET17788.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 488

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQ 110
               + CI+C +C   CP  AI     P       +           ID  KCIYCG C 
Sbjct: 150 WIDHDTCISCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDENKCIYCGKCM 209

Query: 111 EACPVDAIVE 120
            ACP  AI E
Sbjct: 210 NACPFGAIFE 219



 Score = 39.3 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIACK--LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           +      + C  C    C+  CP  A+ + +               ID   CI CG+C +
Sbjct: 114 QINYEITDLCRGCTARSCQYNCPKGAVHVHADTGKAW---------IDHDTCISCGICHK 164

Query: 112 ACPVDAIVEGP 122
           +CP  AIV  P
Sbjct: 165 SCPYHAIVYIP 175


>gi|237709652|ref|ZP_04540133.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229456288|gb|EEO62009.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 487

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQ 110
               + CI+C +C   CP  AI     P       +           ID  KCIYCG C 
Sbjct: 150 WIDHDTCISCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDENKCIYCGKCM 209

Query: 111 EACPVDAIVE 120
            ACP  AI E
Sbjct: 210 NACPFGAIFE 219



 Score = 39.3 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIACK--LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           +      + C  C    C+  CP  A+ + +               ID   CI CG+C +
Sbjct: 114 QINYEITDLCRGCTARSCQYNCPKGAVHVHADTGKAW---------IDHDTCISCGICHK 164

Query: 112 ACPVDAIVEGP 122
           +CP  AIV  P
Sbjct: 165 SCPYHAIVYIP 175


>gi|145592049|ref|YP_001154051.1| thiamine pyrophosphate binding domain-containing protein
           [Pyrobaculum arsenaticum DSM 13514]
 gi|145283817|gb|ABP51399.1| thiamine pyrophosphate enzyme domain protein TPP-binding
           [Pyrobaculum arsenaticum DSM 13514]
          Length = 604

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 10/68 (14%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            A+ +Y    E+CI C +C  +    AI      +            ID   C+ CG+C 
Sbjct: 531 VAIPKYKVEPEKCIGCGICYNLLKCSAIQARPDRKA----------YIDPALCVGCGMCA 580

Query: 111 EACPVDAI 118
           E CPVDAI
Sbjct: 581 EVCPVDAI 588


>gi|294776604|ref|ZP_06742073.1| 4Fe-4S binding domain protein [Bacteroides vulgatus PC510]
 gi|319642355|ref|ZP_07997010.1| hydrogenase [Bacteroides sp. 3_1_40A]
 gi|294449519|gb|EFG18050.1| 4Fe-4S binding domain protein [Bacteroides vulgatus PC510]
 gi|317386015|gb|EFV66939.1| hydrogenase [Bacteroides sp. 3_1_40A]
          Length = 481

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQ 110
               + CI+C +C   CP  AI     P       +           ID  KCIYCG C 
Sbjct: 143 WIDHDTCISCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDENKCIYCGKCM 202

Query: 111 EACPVDAIVE 120
            ACP  AI E
Sbjct: 203 NACPFGAIFE 212



 Score = 39.3 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIACK--LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           +      + C  C    C+  CP  A+ + +               ID   CI CG+C +
Sbjct: 107 QINYEITDLCRGCTARSCQYNCPKGAVHVHADTGKAW---------IDHDTCISCGICHK 157

Query: 112 ACPVDAIVEGP 122
           +CP  AIV  P
Sbjct: 158 SCPYHAIVYIP 168


>gi|309390313|gb|ADO78193.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Halanaerobium
           praevalens DSM 2228]
          Length = 1178

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 42/141 (29%), Gaps = 26/141 (18%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPR 85
               S   +   A+       + CI C  C   CP                A        
Sbjct: 669 PPGLSQYEKRGIAINVPDWKIDTCIQCNQCSLACPHAVIRPFLLNEEEAANAPEGFETLD 728

Query: 86  CHDGTRRTVRYDID--MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD------ 137
                   + Y I      C  CG+C E CPVDA+      E A +      Y       
Sbjct: 729 ARGKQLEGLEYKIQVSPYDCTGCGVCAEVCPVDALEMTSFAEMAEKEADNWEYAVNEVSV 788

Query: 138 KERLLNN----GDRWESEIVR 154
           K+ L++     G +++  ++ 
Sbjct: 789 KDDLMDPVNIKGSQFQEPLLE 809


>gi|302389032|ref|YP_003824853.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Thermosediminibacter oceani DSM 16646]
 gi|302199660|gb|ADL07230.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Thermosediminibacter oceani DSM 16646]
          Length = 315

 Score = 57.4 bits (137), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 37/108 (34%), Gaps = 16/108 (14%)

Query: 22  LCLRYFFKAKT---TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78
              +   K      T+  P E+        G   ++R     E C  C  C   CP   I
Sbjct: 219 TTAKELLKQMPFAGTVPSPQEENEGMVT--GNWRMKRPILNTEACTQCWTCWIYCPDTCI 276

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
                 +  DG    ++Y      C  CGLC   CP  AI E P  +F
Sbjct: 277 -----KKGEDGPLFNLKY------CKGCGLCAAVCPTGAITEVPELDF 313


>gi|171184660|ref|YP_001793579.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Thermoproteus neutrophilus V24Sta]
 gi|170933872|gb|ACB39133.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Thermoproteus neutrophilus V24Sta]
          Length = 103

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 34/75 (45%), Gaps = 1/75 (1%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G   LR   N  ERC+ C+LC   CP   I  + G     G    VRY+I+   C  CG+
Sbjct: 28  GWRTLRPVIND-ERCVRCQLCWLYCPEGTIVEKKGVFKVGGRTYDVRYEINYDYCKGCGI 86

Query: 109 CQEACPVDAIVEGPN 123
           C   CP  AI   P 
Sbjct: 87  CANECPTKAIEMVPE 101


>gi|153868837|ref|ZP_01998574.1| protein involved in sulfur oxidation dsrL [Beggiatoa sp. PS]
 gi|152074580|gb|EDN71420.1| protein involved in sulfur oxidation dsrL [Beggiatoa sp. PS]
          Length = 662

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 4/60 (6%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C  C  C   CP +A+          G      Y+    +CI C +C E CP   I  G
Sbjct: 604 MCFECDNCVMYCPQEAVKRTPKKDATTGRYVYTDYN----RCIGCHICAEVCPTGYINMG 659


>gi|226364584|ref|YP_002782366.1| ferredoxin--NADP(+) reductase [Rhodococcus opacus B4]
 gi|226243073|dbj|BAH53421.1| putative ferredoxin--NADP(+) reductase [Rhodococcus opacus B4]
          Length = 559

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 29/81 (35%), Gaps = 6/81 (7%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C     C  +CP   I      +       T    ID   CI CG C E CPV+AI  
Sbjct: 7   QPCCNDASCVDVCPVNCIHPTPDEKP---FATTEMLYIDPDTCIDCGACVEECPVEAIYA 63

Query: 121 GPNFEFATE---TRQELYYDK 138
             + +   E        YY K
Sbjct: 64  ENDLDEVDEPYLDINAQYYTK 84


>gi|111017434|ref|YP_700406.1| ferredoxin--NADP(+) reductase [Rhodococcus jostii RHA1]
 gi|110816964|gb|ABG92248.1| ferredoxin--NADP(+) reductase [Rhodococcus jostii RHA1]
          Length = 542

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C     C A+CP   I      R     +RT    ID   CI CG C + CPVDAIV 
Sbjct: 7   QNCCNDATCVAVCPVDCIHPTPAERE---YQRTEMLYIDPGACIDCGACADVCPVDAIVP 63

Query: 121 GP 122
           G 
Sbjct: 64  GD 65



 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 18/65 (27%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +    +P  R              CI C  C  +CP  AI     P       R + 
Sbjct: 19  CPVDCIHPTPAEREYQRTEMLYIDPGACIDCGACADVCPVDAIVPGDAPAPDIDRYREIN 78

Query: 96  YDIDM 100
            +   
Sbjct: 79  AEYFQ 83


>gi|308274678|emb|CBX31277.1| hypothetical protein N47_E47890 [uncultured Desulfobacterium sp.]
          Length = 1155

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 23/85 (27%), Gaps = 7/85 (8%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR-------YDI 98
           +F+              C  C  C  +C  +     +                    Y I
Sbjct: 101 QFKVTIRQHLNWVDPNLCTGCGYCADVCQVEIPDKFNENIGTHKAVYLPVPHAIPNPYII 160

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPN 123
           D   C  CG C + CP  AI    +
Sbjct: 161 DFTSCTRCGACIKVCPTGAINLPQD 185



 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 9/59 (15%)

Query: 59   GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
                C  C+ C   CP  A +++             R  I+   C  CG C   CP  A
Sbjct: 1086 HHSICALCEQCIDACPYGARSVDYD---------NERILINPGICQGCGTCAAVCPNSA 1135


>gi|118580575|ref|YP_901825.1| glutamate synthase alpha subunit [Pelobacter propionicus DSM 2379]
 gi|118503285|gb|ABK99767.1| glutamate synthase (NADPH) GltB3 subunit [Pelobacter propionicus
           DSM 2379]
          Length = 771

 Score = 57.0 bits (136), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 32/95 (33%), Gaps = 5/95 (5%)

Query: 29  KAKTTINYPFEKGS---TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
           K       P E+ S     P+ RG   LR   +   RCI+C  C           E    
Sbjct: 674 KKP--EMIPQERLSRELFMPQNRGRFRLRDAKDEVHRCISCGTCRDCSMCLETCPEGAIV 731

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             +    +V Y  D   CI CG+C   CP      
Sbjct: 732 RTEKEDGSVEYTSDERYCIGCGICASICPCGVWAM 766


>gi|148264692|ref|YP_001231398.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Geobacter uraniireducens Rf4]
 gi|146398192|gb|ABQ26825.1| ech hydrogenase subunit F [Geobacter uraniireducens Rf4]
          Length = 124

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 43/117 (36%), Gaps = 14/117 (11%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                    +       T+ YP  +   +   RG        N  +RCI C +C   CP 
Sbjct: 3   IFTMTKTVTKNLVTGPATLMYPQRERIFTAITRGRIE-----NAIDRCIFCGMCGRRCPT 57

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
            AIT+    +          + ID +KC  C LC E CPV  +  G ++      RQ
Sbjct: 58  YAITVTKESKA---------WQIDRLKCCICNLCVEVCPVKCLSTGNHYSQPVVERQ 105


>gi|293392056|ref|ZP_06636390.1| hydrogenase-4 component H [Aggregatibacter actinomycetemcomitans
           D7S-1]
 gi|290952590|gb|EFE02709.1| hydrogenase-4 component H [Aggregatibacter actinomycetemcomitans
           D7S-1]
          Length = 168

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 5/65 (7%)

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
             CPA A+T+ + P   D       + + + +CI+CG C+E CP  AI    +FE +   
Sbjct: 1   MACPANALTMRTDPVTGD-----RTWSLFLGRCIFCGRCEEVCPTKAIRLTQDFELSVTN 55

Query: 131 RQELY 135
           +Q+LY
Sbjct: 56  KQDLY 60


>gi|182415927|ref|YP_001820993.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Opitutus terrae PB90-1]
 gi|177843141|gb|ACB77393.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Opitutus
           terrae PB90-1]
          Length = 104

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 35/97 (36%), Gaps = 14/97 (14%)

Query: 28  FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH 87
                T  YPFE     P  RG+            C  C +C   CP +AI +       
Sbjct: 7   VSKPVTCRYPFEPRVPVPGSRGQLEF-----DPTACTYCTVCAKKCPTRAIVV------- 54

Query: 88  DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
              R    + ID + CI CG C E+CP   +    + 
Sbjct: 55  --KRAAKHWTIDRLLCISCGYCVESCPKHCLELTTDH 89


>gi|169334180|ref|ZP_02861373.1| hypothetical protein ANASTE_00576 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258897|gb|EDS72863.1| hypothetical protein ANASTE_00576 [Anaerofustis stercorihominis DSM
           17244]
          Length = 1170

 Score = 57.0 bits (136), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 26/82 (31%), Gaps = 16/82 (19%)

Query: 58  NGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTR-----------RTVRYDIDMI 101
               +CI C  C  +CP   I       E      +G                R  +   
Sbjct: 684 WDANKCIQCNQCSYVCPHATIRPFLLDDEEKKNAPEGFETLEAKGPGVEGYNFRIQVSSY 743

Query: 102 KCIYCGLCQEACPVDAIVEGPN 123
            C+ CG C E CP +AI   P 
Sbjct: 744 DCLGCGQCVEICPTNAISMTPI 765


>gi|226361209|ref|YP_002778987.1| ferredoxin--NADP(+) reductase [Rhodococcus opacus B4]
 gi|226239694|dbj|BAH50042.1| putative ferredoxin--NADP(+) reductase [Rhodococcus opacus B4]
          Length = 541

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C     C A+CP   I      R     +RT    ID   CI CG C + CPVDAIV 
Sbjct: 7   QNCCNDATCVAVCPVDCIHPTPAERE---YKRTEMLYIDPGACIDCGACSDVCPVDAIVP 63

Query: 121 GP 122
           G 
Sbjct: 64  GD 65


>gi|111022079|ref|YP_705051.1| ferredoxin--NADP(+) reductase, C-terminal [Rhodococcus jostii RHA1]
 gi|110821609|gb|ABG96893.1| possible ferredoxin--NADP(+) reductase, C-terminal [Rhodococcus
           jostii RHA1]
          Length = 559

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 29/81 (35%), Gaps = 6/81 (7%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C     C  +CP   I      +       T    ID   CI CG C E CPV+AI  
Sbjct: 7   QPCCNDASCVDVCPVNCIHPTPDEKP---FATTEMLYIDPDTCIDCGACVEECPVEAIYA 63

Query: 121 GPNFEFATE---TRQELYYDK 138
             + +   E        YY K
Sbjct: 64  ENDLDEVDEPYLDINAQYYTK 84


>gi|302871901|ref|YP_003840537.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302574760|gb|ADL42551.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 598

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 15/96 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            LRY F+ +   +   ++           AL R    ++ C  C +C   CPA AIT + 
Sbjct: 514 TLRY-FRDEYEAHVKEKRCPAGAC----KALLRIVIDKDLCKGCGICAKNCPANAITGQI 568

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                        ++ID  KCI CG+C E CP  AI
Sbjct: 569 KKP----------FEIDQSKCIKCGVCIEKCPFKAI 594


>gi|298528245|ref|ZP_07015649.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511897|gb|EFI35799.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 203

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 3/85 (3%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E    S   R   +L RY    E C  C  C+ +C   A+  E+      G      ++I
Sbjct: 115 EHVDRSCPSRECKSLVRYEIVPELCTMCGECKKVCRYNAVLGETKKPYFTGY---QPFEI 171

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPN 123
            + +C  CG C + CP  AIV G N
Sbjct: 172 RLKRCTGCGECVDVCPEGAIVVGSN 196


>gi|312127640|ref|YP_003992514.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor hydrothermalis
           108]
 gi|311777659|gb|ADQ07145.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor hydrothermalis
           108]
          Length = 598

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 41/96 (42%), Gaps = 15/96 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            LRY F+ +   +   ++           AL R    +E C  C +C   CPA AIT + 
Sbjct: 514 TLRY-FRDEYEAHVKEKRCPAGAC----KALLRIVIDKELCKGCGICAKNCPANAITGQI 568

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                        ++ID  KCI CG+C E CP  AI
Sbjct: 569 KKP----------FEIDQSKCIKCGVCIEKCPFKAI 594


>gi|146296868|ref|YP_001180639.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor saccharolyticus
           DSM 8903]
 gi|145410444|gb|ABP67448.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Caldicellulosiruptor saccharolyticus DSM
           8903]
          Length = 598

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 15/96 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            LRY F+ +   +   ++           AL R    ++ C  C +C   CPA AIT + 
Sbjct: 514 TLRY-FRDEYEAHVKEKRCPAGAC----KALLRIVIDKDLCKGCGICAKNCPANAITGQI 568

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                        ++ID  KCI CG+C E CP  AI
Sbjct: 569 KKP----------FEIDQEKCIKCGVCIEKCPFKAI 594


>gi|325288319|ref|YP_004264500.1| NADH dehydrogenase (quinone) [Syntrophobotulus glycolicus DSM 8271]
 gi|324963720|gb|ADY54499.1| NADH dehydrogenase (quinone) [Syntrophobotulus glycolicus DSM 8271]
          Length = 247

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 42/111 (37%), Gaps = 11/111 (9%)

Query: 25  RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84
           +       T +Y  E        +G    +     ++ C  C  C   CP  AI +E+  
Sbjct: 7   KSLMTGIVTTDYSGEGAIIPEHDQGFPIRQ-----DKFCQQCGKCAEACPQAAIKLEAAA 61

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
                  +   + ID+ KCI CG C E CPV A+  G   E A  +   L 
Sbjct: 62  ------WKGFSWKIDLKKCICCGFCIEECPVQALSRGKEDEQAEISLDSLL 106


>gi|222529289|ref|YP_002573171.1| NADH dehydrogenase [Caldicellulosiruptor bescii DSM 6725]
 gi|312622465|ref|YP_004024078.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor kronotskyensis
           2002]
 gi|222456136|gb|ACM60398.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor bescii DSM 6725]
 gi|312202932|gb|ADQ46259.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 598

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 15/96 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            LRY F+ +   +   ++           AL R    ++ C  C +C   CPA AIT + 
Sbjct: 514 TLRY-FRDEYEAHVKEKRCPAGAC----KALLRIVIDKDLCKGCGICAKNCPANAITGQI 568

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                        ++ID  KCI CG+C E CP  AI
Sbjct: 569 KKP----------FEIDQSKCIKCGVCIEKCPFKAI 594


>gi|295101854|emb|CBK99399.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric
           [Faecalibacterium prausnitzii L2-6]
          Length = 1174

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 28/99 (28%), Gaps = 15/99 (15%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ--------------AITIESGP 84
           E+G+++   RG            +C+ C  C  +C                 A       
Sbjct: 667 EQGASAYEKRGTAVNVPEW-DAAKCVGCNQCAFVCSHATIRPFQLTADELAAAPAQTKSR 725

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                        +  + C+ CG C   CP  AI   P 
Sbjct: 726 DNKPANEYKFVMAVSPLDCMGCGECVTVCPTKAIQMVPQ 764


>gi|242281199|ref|YP_002993328.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
 gi|242124093|gb|ACS81789.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
          Length = 428

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 15/97 (15%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C  C  C   CP  AIT+          +     +I+   C+ CG+C   CP  A+   
Sbjct: 293 DCNGCGKCARACPIDAITMHKE-NVPGAEKPRRFAEINKNICLGCGVCALKCPTGALQM- 350

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158
                  + R++     E      D +E  I++++  
Sbjct: 351 -------DKREQRVIHPE------DSFERVILQSLER 374



 Score = 38.2 bits (87), Expect = 0.41,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPN 123
           I++  C  CG C  ACP+DAI     
Sbjct: 289 IELADCNGCGKCARACPIDAITMHKE 314


>gi|312135114|ref|YP_004002452.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor owensensis OL]
 gi|311775165|gb|ADQ04652.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor owensensis OL]
          Length = 598

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 15/96 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            LRY F+ +   +   ++           AL R    ++ C  C +C   CPA AIT + 
Sbjct: 514 TLRY-FRDEYEAHVKEKRCPAGAC----KALLRIVIDKDLCKGCGICAKNCPANAITGQI 568

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                        ++ID  KCI CG+C E CP  AI
Sbjct: 569 KKP----------FEIDQSKCIKCGVCIEKCPFKAI 594


>gi|312876005|ref|ZP_07735994.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor lactoaceticus
           6A]
 gi|311797203|gb|EFR13543.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor lactoaceticus
           6A]
          Length = 598

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 41/96 (42%), Gaps = 15/96 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            LRY F+ +   +   ++           AL R    +E C  C +C   CPA AIT + 
Sbjct: 514 TLRY-FRDEYEAHVKEKRCPAGAC----KALLRIVIDKELCKGCGICAKNCPANAITGQI 568

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                        ++ID  KCI CG+C E CP  AI
Sbjct: 569 KKP----------FEIDQSKCIKCGVCIEKCPFKAI 594


>gi|312793480|ref|YP_004026403.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312180620|gb|ADQ40790.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 598

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 41/96 (42%), Gaps = 15/96 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            LRY F+ +   +   ++           AL R    +E C  C +C   CPA AIT + 
Sbjct: 514 TLRY-FRDEYEAHVKEKRCPAGAC----KALLRIVIDKELCKGCGICAKNCPANAITGQI 568

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                        ++ID  KCI CG+C E CP  AI
Sbjct: 569 KKP----------FEIDQSKCIKCGVCIEKCPFKAI 594


>gi|329964944|ref|ZP_08301952.1| 4Fe-4S binding domain protein [Bacteroides fluxus YIT 12057]
 gi|328524585|gb|EGF51653.1| 4Fe-4S binding domain protein [Bacteroides fluxus YIT 12057]
          Length = 486

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110
               + CI+C +C   CP  AI     P       + +  D      ID  KCIYCG C 
Sbjct: 148 WIDHDACISCGICHKSCPYHAIVYIPVPCEEACPVKAISKDAKGIEHIDENKCIYCGKCL 207

Query: 111 EACPVDAIVE 120
            ACP  AI E
Sbjct: 208 NACPFGAIFE 217



 Score = 37.8 bits (86), Expect = 0.53,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 27/80 (33%), Gaps = 6/80 (7%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY------DIDMIK 102
           G          +E C AC               +     +  ++ V         ID   
Sbjct: 94  GTPKDNIMCVIDEACSACVQINYEITNLCRGCTARSCQTNCPKKAVHVKESGQAWIDHDA 153

Query: 103 CIYCGLCQEACPVDAIVEGP 122
           CI CG+C ++CP  AIV  P
Sbjct: 154 CISCGICHKSCPYHAIVYIP 173


>gi|224535649|ref|ZP_03676188.1| hypothetical protein BACCELL_00513 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522722|gb|EEF91827.1| hypothetical protein BACCELL_00513 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 486

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110
               + CI+C +C   CP  AI     P       + +  D      ID  KCIYCG C 
Sbjct: 148 WIDHDECISCGICHKSCPYHAIVYIPVPCEEACPVKAISKDKKGIEHIDESKCIYCGKCL 207

Query: 111 EACPVDAIVE 120
            ACP  AI E
Sbjct: 208 NACPFGAIFE 217



 Score = 37.8 bits (86), Expect = 0.49,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 28/80 (35%), Gaps = 6/80 (7%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY------DIDMIK 102
           G          +E C AC               +     +  ++ V         ID  +
Sbjct: 94  GTPKDNIMCVIDEACSACVQINYEITNLCRGCTARSCQTNCPKKAVHVKESGQAWIDHDE 153

Query: 103 CIYCGLCQEACPVDAIVEGP 122
           CI CG+C ++CP  AIV  P
Sbjct: 154 CISCGICHKSCPYHAIVYIP 173


>gi|270297051|ref|ZP_06203250.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273038|gb|EFA18901.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 486

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110
               + CI+C +C   CP  AI     P       + +  D      ID  KCIYCG C 
Sbjct: 148 WIDHDACISCGICHKSCPYHAIVYIPVPCEEACPVKAISKDEKGIEHIDESKCIYCGKCL 207

Query: 111 EACPVDAIVE 120
            ACP  AI E
Sbjct: 208 NACPFGAIFE 217



 Score = 37.8 bits (86), Expect = 0.47,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 27/80 (33%), Gaps = 6/80 (7%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY------DIDMIK 102
           G          +E C AC               +     +  ++ V         ID   
Sbjct: 94  GRPKDNIMCVIDEACSACVQINYEITNLCRGCTARSCQVNCPKKAVHVKESGQAWIDHDA 153

Query: 103 CIYCGLCQEACPVDAIVEGP 122
           CI CG+C ++CP  AIV  P
Sbjct: 154 CISCGICHKSCPYHAIVYIP 173


>gi|167037865|ref|YP_001665443.1| NADH dehydrogenase (quinone) [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|320116282|ref|YP_004186441.1| NADH dehydrogenase (quinone) [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166856699|gb|ABY95107.1| NADH dehydrogenase (quinone) [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|319929373|gb|ADV80058.1| NADH dehydrogenase (quinone) [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 596

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 15/97 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            +RY F+ +   +   +K           AL R+    ++C  C +C   CP  AI+   
Sbjct: 513 TIRY-FRDEYEAHIKEKKCPAGVC----QALLRFYIDPDKCKGCGICAKNCPVNAISG-- 565

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
                   +    Y ID  KCI CG C E CP  AI 
Sbjct: 566 --------KPRQPYVIDQDKCIKCGTCIEKCPFGAIY 594



 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 8/62 (12%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
            I+         +  +R+ ID  KC  CG+C + CPV+AI        + + RQ    D+
Sbjct: 524 HIKEKKCPAGVCQALLRFYIDPDKCKGCGICAKNCPVNAI--------SGKPRQPYVIDQ 575

Query: 139 ER 140
           ++
Sbjct: 576 DK 577


>gi|317133525|ref|YP_004092839.1| NADH dehydrogenase (quinone) [Ethanoligenens harbinense YUAN-3]
 gi|315471504|gb|ADU28108.1| NADH dehydrogenase (quinone) [Ethanoligenens harbinense YUAN-3]
          Length = 624

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 38/98 (38%), Gaps = 15/98 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            L+Y F+ +   +   +K  T        A+  Y    E C  C  C  ICP  AI+ E 
Sbjct: 541 TLKY-FRDEYIAHVRDKKCPTHTC----KAMSIYAIDPEACKGCSKCSRICPVGAISGE- 594

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
                        + ID  KCI CG C   CP  AI E
Sbjct: 595 ---------IRHPFTIDTQKCIKCGACIANCPFHAIKE 623


>gi|289578042|ref|YP_003476669.1| NADH dehydrogenase (quinone) [Thermoanaerobacter italicus Ab9]
 gi|297544313|ref|YP_003676615.1| NADH dehydrogenase (quinone) [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|289527755|gb|ADD02107.1| NADH dehydrogenase (quinone) [Thermoanaerobacter italicus Ab9]
 gi|296842088|gb|ADH60604.1| NADH dehydrogenase (quinone) [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 596

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 15/97 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            +RY F+ +   +   +K           AL R+    ++C  C +C   CP  AI+   
Sbjct: 513 TIRY-FRDEYEAHIKEKKCPAGVC----QALLRFYIDPDKCKGCGICAKNCPVNAISG-- 565

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
                   +    Y ID  KCI CG C E CP  AI 
Sbjct: 566 --------KPRQPYVIDQDKCIKCGTCIEKCPFGAIY 594



 Score = 42.8 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 8/62 (12%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
            I+         +  +R+ ID  KC  CG+C + CPV+AI        + + RQ    D+
Sbjct: 524 HIKEKKCPAGVCQALLRFYIDPDKCKGCGICAKNCPVNAI--------SGKPRQPYVIDQ 575

Query: 139 ER 140
           ++
Sbjct: 576 DK 577


>gi|189467136|ref|ZP_03015921.1| hypothetical protein BACINT_03520 [Bacteroides intestinalis DSM
           17393]
 gi|189435400|gb|EDV04385.1| hypothetical protein BACINT_03520 [Bacteroides intestinalis DSM
           17393]
          Length = 486

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110
               + CI+C +C   CP  AI     P       + +  D      ID  KCIYCG C 
Sbjct: 148 WIDHDECISCGICHKSCPYHAIVYIPVPCEEACPVKAISKDKKGIEHIDESKCIYCGKCL 207

Query: 111 EACPVDAIVE 120
            ACP  AI E
Sbjct: 208 NACPFGAIFE 217



 Score = 37.8 bits (86), Expect = 0.51,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 28/80 (35%), Gaps = 6/80 (7%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY------DIDMIK 102
           G          +E C AC               +     +  ++ V         ID  +
Sbjct: 94  GTPKDNIMCVIDEACSACVQINYEITNLCRGCTARSCQTNCPKKAVHVKESGQAWIDHDE 153

Query: 103 CIYCGLCQEACPVDAIVEGP 122
           CI CG+C ++CP  AIV  P
Sbjct: 154 CISCGICHKSCPYHAIVYIP 173


>gi|126459280|ref|YP_001055558.1| pyruvate ferredoxin oxidoreductase, delta subunit [Pyrobaculum
           calidifontis JCM 11548]
 gi|126249001|gb|ABO08092.1| pyruvate ferredoxin oxidoreductase, delta subunit [Pyrobaculum
           calidifontis JCM 11548]
          Length = 103

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 29/65 (44%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++RCI C+LC   CP   I    G          V+Y+I+   C  CG+C   CP  AI
Sbjct: 37  HDDRCIRCQLCWLYCPEGTIVEVKGVFKVGNRTYDVKYEINYDYCKGCGICANECPTKAI 96

Query: 119 VEGPN 123
              P 
Sbjct: 97  EMVPE 101


>gi|187934487|ref|YP_001886193.1| periplasmic [Fe] hydrogenase 1 [Clostridium botulinum B str. Eklund
           17B]
 gi|187722640|gb|ACD23861.1| periplasmic [Fe] hydrogenase 1 [Clostridium botulinum B str. Eklund
           17B]
          Length = 646

 Score = 56.6 bits (135), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 10/63 (15%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ++CI C  C+  CP   I  E   +          ++ID  KC +CG C  ACPVDAI  
Sbjct: 222 KKCIGCGSCKRACPVDCIDGELKKQ----------HNIDYNKCTHCGACISACPVDAITA 271

Query: 121 GPN 123
           G N
Sbjct: 272 GNN 274


>gi|288575149|ref|ZP_06393506.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570890|gb|EFC92447.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 229

 Score = 56.3 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/134 (25%), Positives = 48/134 (35%), Gaps = 35/134 (26%)

Query: 24  LRYFFKAKTTINYP----------------------FEKGSTSPRFRGEHALRRYPNGEE 61
           LR+ FK   T  YP                       E   T  RFRG+          E
Sbjct: 10  LRHLFKKAFTNPYPVSHMPDDLTGVLEAASKGEIDLNEPVETWGRFRGKVG-----YDRE 64

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           +CI C +C  +CPA AI                +  +   +C +C  C + CPVDA+   
Sbjct: 65  KCIGCGMCMKVCPANAIERAPED--------PKKIIVHNDRCCFCAQCNDICPVDALTMT 116

Query: 122 PNFEFATETRQELY 135
            +F  +T  R+   
Sbjct: 117 CDFAISTYERKSNV 130



 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 36/94 (38%), Gaps = 12/94 (12%)

Query: 29  KAKTTINYPFEKGSTSPRFRGEHA--LRRYPNGEERCIACKLCEAICPAQAITIESGPRC 86
           +      + + KG          A   + Y   EE C+ C +C   CP  AI        
Sbjct: 139 RKPFQSEWTYRKGEVPDEVEDPKAQPKKVYRVREEDCVGCTICAKACPVGAIEG------ 192

Query: 87  HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
               +   ++ ID  KC+ CG+C   CP  AI E
Sbjct: 193 ----KVKEKHVIDPEKCVGCGVCASKCPKGAIEE 222


>gi|160888148|ref|ZP_02069151.1| hypothetical protein BACUNI_00556 [Bacteroides uniformis ATCC 8492]
 gi|317478948|ref|ZP_07938095.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 4_1_36]
 gi|156862283|gb|EDO55714.1| hypothetical protein BACUNI_00556 [Bacteroides uniformis ATCC 8492]
 gi|316904925|gb|EFV26732.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 4_1_36]
          Length = 486

 Score = 56.3 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110
               + CI+C +C   CP  AI     P       + +  D      ID  KCIYCG C 
Sbjct: 148 WIDHDACISCGICHKSCPYHAIVYIPVPCEEACPVKAISKDEKGIEHIDESKCIYCGKCL 207

Query: 111 EACPVDAIVE 120
            ACP  AI E
Sbjct: 208 NACPFGAIFE 217



 Score = 37.8 bits (86), Expect = 0.51,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 27/80 (33%), Gaps = 6/80 (7%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY------DIDMIK 102
           G          +E C AC               +     +  ++ V         ID   
Sbjct: 94  GRPKDNIMCVIDEACSACVQINYEITNLCRGCTARSCQVNCPKKAVHVKESGQAWIDHDA 153

Query: 103 CIYCGLCQEACPVDAIVEGP 122
           CI CG+C ++CP  AIV  P
Sbjct: 154 CISCGICHKSCPYHAIVYIP 173


>gi|294786061|ref|ZP_06751346.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Fusobacterium sp.
           3_1_27]
 gi|294486283|gb|EFG33648.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Fusobacterium sp.
           3_1_27]
          Length = 1190

 Score = 56.3 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 37/120 (30%), Gaps = 20/120 (16%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI----------------TIE 81
           FE G+ +   RG        N  ++CI C  C  +CP  AI                   
Sbjct: 679 FENGTAAFEKRGVAVNVPIWN-LDKCIECNQCAYVCPHAAIRAFLITEEEKTVSPVEFAT 737

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN---FEFATETRQELYYDK 138
                      T R  +  + C  CG C   CP  A+   P     E   + +    Y K
Sbjct: 738 KKANGKGLEDLTYRIQVTPLDCTGCGSCANVCPAKALDMEPIAVALENHEDEKASYIYSK 797


>gi|148244923|ref|YP_001219617.1| putative glutamate synthase (NADPH) small subunit [Candidatus
           Vesicomyosocius okutanii HA]
 gi|146326750|dbj|BAF61893.1| intracellular sulfur oxidation protein DsrL [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 654

 Score = 56.3 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 4/59 (6%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           C  C  C   CP  A+      +   G      Y+    KCI C +C + CP   I  G
Sbjct: 597 CFECDNCVMYCPQDAVFKVKKDKATLGRYVDTDYN----KCIGCHICADVCPTGYIQMG 651


>gi|319901972|ref|YP_004161700.1| hydrogenase large subunit domain protein [Bacteroides helcogenes P
           36-108]
 gi|319417003|gb|ADV44114.1| hydrogenase large subunit domain protein [Bacteroides helcogenes P
           36-108]
          Length = 486

 Score = 56.3 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110
               + CI+C +C   CP  AI     P       + +  D      ID  KCIYCG C 
Sbjct: 148 WIDHDACISCGICHKSCPYHAIVYIPVPCEEACPVKAISKDEKGIEHIDESKCIYCGKCL 207

Query: 111 EACPVDAIVE 120
            ACP  AI E
Sbjct: 208 NACPFGAIFE 217



 Score = 37.4 bits (85), Expect = 0.60,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 28/80 (35%), Gaps = 6/80 (7%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY------DIDMIK 102
           G+         +E C AC               +     +  ++ V         ID   
Sbjct: 94  GKPKENIMCVIDEACSACVQINYEITNLCRGCTARSCQVNCPKKAVHVKESGQAWIDHDA 153

Query: 103 CIYCGLCQEACPVDAIVEGP 122
           CI CG+C ++CP  AIV  P
Sbjct: 154 CISCGICHKSCPYHAIVYIP 173


>gi|237741100|ref|ZP_04571581.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. 4_1_13]
 gi|229430632|gb|EEO40844.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. 4_1_13]
          Length = 1190

 Score = 56.3 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 37/120 (30%), Gaps = 20/120 (16%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI----------------TIE 81
           FE G+ +   RG        N  ++CI C  C  +CP  AI                   
Sbjct: 679 FENGTAAFEKRGVAVNVPIWN-LDKCIECNQCAYVCPHAAIRAFLITEEEKTVSPVEFAT 737

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN---FEFATETRQELYYDK 138
                      T R  +  + C  CG C   CP  A+   P     E   + +    Y K
Sbjct: 738 KKANGKGLEDLTYRIQVTPLDCTGCGSCANVCPAKALDMEPIAVALENHEDEKASYIYSK 797


>gi|237808741|ref|YP_002893181.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Tolumonas auensis
           DSM 9187]
 gi|237501002|gb|ACQ93595.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Tolumonas auensis
           DSM 9187]
          Length = 1196

 Score = 56.3 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 31/94 (32%), Gaps = 16/94 (17%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA-----ITIESGPRCHDGTRRTV 94
             +TS   +   AL      E+ CI C  C  +CP  A        +       G +   
Sbjct: 678 PTATSQWEKRNIALEIPEWREDLCIQCGNCSFVCPHAAIRAKFYHKDLAENAPAGAKWAP 737

Query: 95  R-----------YDIDMIKCIYCGLCQEACPVDA 117
                         +    C  CGLC EACPV A
Sbjct: 738 ISARGFPDTLYTLQVYPEDCTGCGLCVEACPVRA 771



 Score = 36.2 bits (82), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 21/84 (25%)

Query: 85  RCHDGTRRTVRYDIDMIK---CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERL 141
                 +R +  +I   +   CI CG C   CP  AI            R +  Y K+ L
Sbjct: 680 ATSQWEKRNIALEIPEWREDLCIQCGNCSFVCPHAAI------------RAKF-YHKD-L 725

Query: 142 LNN---GDRWESEIVRNIVTDSPY 162
             N   G +W + I      D+ Y
Sbjct: 726 AENAPAGAKW-APISARGFPDTLY 748


>gi|256846239|ref|ZP_05551696.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Fusobacterium sp.
           3_1_36A2]
 gi|256718008|gb|EEU31564.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Fusobacterium sp.
           3_1_36A2]
          Length = 1190

 Score = 56.3 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 37/120 (30%), Gaps = 20/120 (16%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI----------------TIE 81
           FE G+ +   RG        N  ++CI C  C  +CP  AI                   
Sbjct: 679 FENGTAAFEKRGVAVNVPIWN-LDKCIECNQCAYVCPHAAIRAFLITEEEKTVSPVEFAT 737

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN---FEFATETRQELYYDK 138
                      T R  +  + C  CG C   CP  A+   P     E   + +    Y K
Sbjct: 738 KKANGKGLEDLTYRIQVTPLDCTGCGSCANVCPAKALDMEPIAVALENHEDEKASYIYSK 797


>gi|313113215|ref|ZP_07798836.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Faecalibacterium
           cf. prausnitzii KLE1255]
 gi|310624467|gb|EFQ07801.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Faecalibacterium
           cf. prausnitzii KLE1255]
          Length = 1181

 Score = 56.3 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 28/99 (28%), Gaps = 15/99 (15%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ--------------AITIESGP 84
           E+G+++   RG            +C+ C  C  +C                 A       
Sbjct: 674 EQGASAYEKRGTAVNVPEW-DAAKCVGCNQCAFVCSHATIRPFQLTADELAAAPAQTKSR 732

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                        +  + C+ CG C   CP  AI   P 
Sbjct: 733 DNKPANEYKFVMAVSPLDCMGCGECVTVCPTKAITMVPQ 771


>gi|253700860|ref|YP_003022049.1| nitrite/sulfite reductase hemoprotein beta-component ferrodoxin
           domain protein [Geobacter sp. M21]
 gi|251775710|gb|ACT18291.1| nitrite/sulfite reductase hemoprotein beta-component ferrodoxin
           domain protein [Geobacter sp. M21]
          Length = 314

 Score = 56.3 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 35/97 (36%), Gaps = 11/97 (11%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
           +   + FK       PF+   ++    G             CI+C LC   C   A+T+ 
Sbjct: 129 VTGHHKFKVGF-AGCPFDCPKSATNDVGLQGAVWPALDASGCISCGLCAKSCTEGALTMG 187

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           +  +             D  KCIYCG C + CP  A 
Sbjct: 188 ADNKPVF----------DTAKCIYCGDCIKVCPTGAW 214


>gi|126437797|ref|YP_001073488.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing
           protein [Mycobacterium sp. JLS]
 gi|126237597|gb|ABO00998.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Mycobacterium sp. JLS]
          Length = 1202

 Score = 56.3 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 30/100 (30%), Gaps = 24/100 (24%)

Query: 58  NGEERCIACKLCEAICPA--------QAITIESGPRCHDGTRRTVR--------YDIDMI 101
              + CI C  C  +CP          A  ++  P                     + + 
Sbjct: 698 WDPDTCIQCGNCAFVCPHSVIRTKLYDADRLDGAPDAFASAPLNAVGLPESRYTLQVYVE 757

Query: 102 KCIYCGLCQEACP--------VDAIVEGPNFEFATETRQE 133
            C  CGLC EACP          AI  GP      E R+ 
Sbjct: 758 DCTGCGLCVEACPAVAPGIPLTKAINLGPREPLVAEQREN 797


>gi|289522359|ref|ZP_06439213.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289504195|gb|EFD25359.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 590

 Score = 56.3 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 15/98 (15%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
             L+YF +   T +   +K           +L RY    + CI C  C  ICP  AI+  
Sbjct: 506 TTLKYFREEYET-HVKDKKCPAKVC----PSLIRYTINTDLCIGCTRCARICPVGAISG- 559

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
                    +    ++ID  KC+ CG C++ CPV AI 
Sbjct: 560 ---------KVKEPHEIDDAKCVRCGQCKQTCPVSAIF 588


>gi|225175927|ref|ZP_03729919.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1]
 gi|225168515|gb|EEG77317.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1]
          Length = 597

 Score = 56.3 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 40/96 (41%), Gaps = 15/96 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            L+YF K   T +   +K           AL  Y   +  C+ C +C   CP  AI  E 
Sbjct: 514 TLQYFRKEYET-HIKDKKCPAGVC----QALFFYRIDDHICVGCGVCIKACPTDAIEGE- 567

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                    R   + +DM KCI CG C +ACP  A+
Sbjct: 568 ---------RKQAHHLDMEKCIKCGGCVDACPFHAV 594


>gi|312144189|ref|YP_003995635.1| NADH dehydrogenase (quinone) [Halanaerobium sp. 'sapolanicus']
 gi|311904840|gb|ADQ15281.1| NADH dehydrogenase (quinone) [Halanaerobium sp. 'sapolanicus']
          Length = 600

 Score = 56.3 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 10/69 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L  Y    E CI C  C  +CP  AI+ E              ++ID   CI CG C+  
Sbjct: 542 LSTYVITTEDCIGCGKCAKVCPVDAISGEIKG----------IFEIDEDICIACGACEPV 591

Query: 113 CPVDAIVEG 121
           CPVDAI +G
Sbjct: 592 CPVDAISQG 600



 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 17/44 (38%)

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +A   +              Y I    CI CG C + CPVDAI
Sbjct: 524 YEAHIHKQNCPAGACQDLLSTYVITTEDCIGCGKCAKVCPVDAI 567


>gi|323701729|ref|ZP_08113400.1| Ferredoxin hydrogenase [Desulfotomaculum nigrificans DSM 574]
 gi|323533265|gb|EGB23133.1| Ferredoxin hydrogenase [Desulfotomaculum nigrificans DSM 574]
          Length = 467

 Score = 56.3 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110
                 CI C  C   CP  AI   + P       + V+ D      ID  +C+ CG+C 
Sbjct: 124 FIDHTVCIECGKCAKACPYHAIIEITRPCERACALKAVKIDDSRKAVIDSDRCVSCGMCV 183

Query: 111 EACPVDAIVEG 121
             CP  AI + 
Sbjct: 184 TVCPFGAITDT 194



 Score = 42.0 bits (97), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTV-----RYDIDMIKCIYCGLCQEACPVDA 117
           C  C + + +         + P  +   ++ +     R  ID   CI CG C +ACP  A
Sbjct: 85  CNGCSVNKYVVTDACQNCVAHPCRNSCPKKAISVIQNRAFIDHTVCIECGKCAKACPYHA 144

Query: 118 IVE 120
           I+E
Sbjct: 145 IIE 147


>gi|34763801|ref|ZP_00144714.1| Pyruvate-flavodoxin oxidoreductase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27886425|gb|EAA23687.1| Pyruvate-flavodoxin oxidoreductase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 1190

 Score = 56.3 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 37/120 (30%), Gaps = 20/120 (16%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI----------------TIE 81
           FE G+ +   RG        N  ++CI C  C  +CP  AI                   
Sbjct: 679 FENGTAALEKRGVAVNVPIWN-LDKCIECNQCAYVCPHAAIRAFLITEEEKTVSPVEFAT 737

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN---FEFATETRQELYYDK 138
                      T R  +  + C  CG C   CP  A+   P     E   + +    Y K
Sbjct: 738 KKANGKGLEDLTYRIQVTPLDCTGCGSCANVCPAKALDMEPIAVALENHEDEKASYIYSK 797


>gi|254168050|ref|ZP_04874898.1| Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
           protein [Aciduliprofundum boonei T469]
 gi|289595979|ref|YP_003482675.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Aciduliprofundum boonei T469]
 gi|197623093|gb|EDY35660.1| Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
           protein [Aciduliprofundum boonei T469]
 gi|289533766|gb|ADD08113.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Aciduliprofundum boonei T469]
          Length = 629

 Score = 56.3 bits (134), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 3/71 (4%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R +     Y   +++C  C +C       AI  +      +G     R  I+   C  CG
Sbjct: 556 RKQGEWWVYEINQDKCTQCGICSDWLACVAIYKDKDDLAPNGK---PRVYINNALCDGCG 612

Query: 108 LCQEACPVDAI 118
           +C   CP +AI
Sbjct: 613 VCATVCPFNAI 623


>gi|268323352|emb|CBH36940.1| hypothetical protein, Coenzyme F420 hydrogenase/dehydrogenase, beta
           subunit family [uncultured archaeon]
          Length = 467

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 42/130 (32%), Gaps = 14/130 (10%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA-ITI 80
           + +R           P E    S          R+   +ERCI C LC  +C     ++ 
Sbjct: 81  IGIRKMLLELLLARCPDEGRIQSLAMEYGIVKPRFVLEDERCILCGLCTRVCDELVGVSA 140

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY--DK 138
            +             Y      CI CG C   CP +AI            R++  Y    
Sbjct: 141 INVISRGVEREVGTPYRELSDDCIGCGSCALVCPTEAI-----------KREKNIYPTTA 189

Query: 139 ERLLNNGDRW 148
           E ++   D++
Sbjct: 190 EDIVELEDKF 199


>gi|254168136|ref|ZP_04874983.1| Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
           protein [Aciduliprofundum boonei T469]
 gi|197622902|gb|EDY35470.1| Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
           protein [Aciduliprofundum boonei T469]
          Length = 629

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 3/71 (4%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R +     Y   +++C  C +C       AI  +      +G     R  I+   C  CG
Sbjct: 556 RKQGEWWVYEINQDKCTQCGICSDWLACVAIYKDKDDLAPNGK---PRVYINNALCDGCG 612

Query: 108 LCQEACPVDAI 118
           +C   CP +AI
Sbjct: 613 VCATVCPFNAI 623


>gi|297526580|ref|YP_003668604.1| dihydroorotate dehydrogenase family protein [Staphylothermus
           hellenicus DSM 12710]
 gi|297255496|gb|ADI31705.1| dihydroorotate dehydrogenase family protein [Staphylothermus
           hellenicus DSM 12710]
          Length = 406

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 6/67 (8%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              +CI C  CE +C   A+ +                 ++   C  CGLC   CP  AI
Sbjct: 346 DPRKCIGCGFCEQVCDYNAVKVLPSEEGK------RIAQVNHDLCYGCGLCTSVCPTRAI 399

Query: 119 VEGPNFE 125
                 +
Sbjct: 400 HFEEELD 406



 Score = 34.3 bits (77), Expect = 6.3,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 18/41 (43%)

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           +            +D  KCI CG C++ C  +A+   P+ E
Sbjct: 332 KPEPRRVWAKPPVVDPRKCIGCGFCEQVCDYNAVKVLPSEE 372


>gi|159905593|ref|YP_001549255.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C6]
 gi|159887086|gb|ABX02023.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           maripaludis C6]
          Length = 393

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 43/113 (38%), Gaps = 14/113 (12%)

Query: 9   SFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKL 68
           S  +L EFV       + +F   T             RFR    +    +  E+CI+C  
Sbjct: 4   SIWYLYEFVR------KKWFMRFTNAKSEKGSFIPPERFRKIPVI---FDLPEKCISCSA 54

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           C   CP+ AITIE                 D   CI CG C E+CP + +  G
Sbjct: 55  CAESCPSDAITIEYNEEFKKNMPVF-----DTGSCINCGNCVESCPTNVLEMG 102



 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/104 (32%), Positives = 48/104 (46%), Gaps = 16/104 (15%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             L      EE C++C  CE  CP  AI+  S             Y+ID+  C+ C  C 
Sbjct: 116 PKLVNLVIDEEVCVSCGSCENACPVNAISHNSNG----------LYEIDVNLCVSCKNCV 165

Query: 111 EACPV-DAIVEGPNFEFAT--ETRQELYYDKERLLNNGDRWESE 151
           EACPV +AIV     + +   E  Q + +++ERL   G  +E E
Sbjct: 166 EACPVENAIVTYDEPKLSEQIEIAQNIKFNRERL---GSDFEEE 206



 Score = 40.1 bits (92), Expect = 0.10,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 8/64 (12%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            Y   EE+CI C++C   C          P     ++ T    I+   C+ C +C+  CP
Sbjct: 275 CYIIDEEKCIGCRICYRACNV--------PEAISISKETNLPYINPEYCVRCAICRNVCP 326

Query: 115 VDAI 118
           VDA+
Sbjct: 327 VDAV 330



 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 24/82 (29%), Gaps = 23/82 (28%)

Query: 56  YPNGEERCIACKLCEAICPA-QAITIESGPR----------------------CHDGTRR 92
           Y      C++CK C   CP   AI     P+                        +    
Sbjct: 151 YEIDVNLCVSCKNCVEACPVENAIVTYDEPKLSEQIEIAQNIKFNRERLGSDFEEETDVI 210

Query: 93  TVRYDIDMIKCIYCGLCQEACP 114
           +    I    CI CG C + CP
Sbjct: 211 SEIPRIVPSLCIGCGNCVDVCP 232



 Score = 35.8 bits (81), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 22/57 (38%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
             +    A + +      +  R+         KCI C  C E+CP DAI    N EF
Sbjct: 16  WFMRFTNAKSEKGSFIPPERFRKIPVIFDLPEKCISCSACAESCPSDAITIEYNEEF 72


>gi|91202589|emb|CAJ72228.1| similar to NAD(P) oxidoreductase, FAD-containing subunit
           [Candidatus Kuenenia stuttgartiensis]
          Length = 566

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 27/70 (38%), Gaps = 10/70 (14%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCH----------DGTRRTVRYDIDMIKCIYCGLCQ 110
           E+CI C  C  +CP   I++ S                         ID  KCI CGLC 
Sbjct: 489 EKCILCGGCIDVCPYNCISMVSRENISLPDSLRNEENIPEEWDAAMIIDEEKCIRCGLCV 548

Query: 111 EACPVDAIVE 120
           + CP  AI  
Sbjct: 549 KRCPTRAITM 558



 Score = 38.2 bits (87), Expect = 0.36,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)

Query: 95  RYDIDMI-KCIYCGLCQEACPVDAIVE 120
            Y+I +  KCI CG C + CP + I  
Sbjct: 482 HYNIFIDEKCILCGGCIDVCPYNCISM 508


>gi|251779851|ref|ZP_04822771.1| periplasmic [Fe] hydrogenase 1 [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|243084166|gb|EES50056.1| periplasmic [Fe] hydrogenase 1 [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 646

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 10/63 (15%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ++CI C  C+  CP   I  E   +          ++ID  KC +CG C  ACPVDAI  
Sbjct: 222 KKCIGCGSCKRACPVDCIDGELKKQ----------HNIDYNKCTHCGACISACPVDAITA 271

Query: 121 GPN 123
           G N
Sbjct: 272 GNN 274


>gi|188589939|ref|YP_001920992.1| periplasmic [Fe] hydrogenase 1 [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188500220|gb|ACD53356.1| periplasmic [Fe] hydrogenase 1 [Clostridium botulinum E3 str.
           Alaska E43]
          Length = 646

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 10/63 (15%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ++CI C  C+  CP   I  E   +          ++ID  KC +CG C  ACPVDAI  
Sbjct: 222 KKCIGCGSCKRACPVDCIDGELKKQ----------HNIDYNKCTHCGACISACPVDAITA 271

Query: 121 GPN 123
           G N
Sbjct: 272 GNN 274


>gi|240145957|ref|ZP_04744558.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Roseburia
           intestinalis L1-82]
 gi|257201944|gb|EEV00229.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Roseburia
           intestinalis L1-82]
 gi|291535856|emb|CBL08968.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric
           [Roseburia intestinalis M50/1]
 gi|291538352|emb|CBL11463.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric
           [Roseburia intestinalis XB6B4]
          Length = 1181

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 33/108 (30%), Gaps = 16/108 (14%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES--------------- 82
           FE G+ +   RG        N  E+CI C  C  +C    I                   
Sbjct: 673 FEHGAAAYEKRGTAVTVPTWN-AEKCIQCNQCAFVCSHATIRPFMLSEDEVKAAPSNIKV 731

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
                  +       +  + C+ CG C   CPV AI   P    A E 
Sbjct: 732 ADTKPKASEYKYTMSVSPLDCMGCGECITVCPVGAIEMVPQESQADEQ 779


>gi|3414805|gb|AAC31429.1| NADH dehydrogenase subunit 8 [Strigomonas oncopelti]
          Length = 145

 Score = 56.3 bits (134), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/107 (38%), Positives = 54/107 (50%), Gaps = 1/107 (0%)

Query: 11  LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70
           +F+ +F  +FF+C    F    T+  P E    S   RG H  R Y  G ERCIAC+LC+
Sbjct: 1   MFVCDFCFSFFVCFYMCFLCCVTLVLPLELTIVSVCVRGNHYFRFYWCGLERCIACRLCD 60

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
            ICP+  I +  G     G R +  +     +CIYCG C   CP DA
Sbjct: 61  FICPSLDIDVRVG-WSLCGHRFSGVFGFSYRRCIYCGFCMHVCPTDA 106


>gi|254787399|ref|YP_003074828.1| glutamate synthase (NADPH) small subunit [Teredinibacter turnerae
           T7901]
 gi|237686554|gb|ACR13818.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Teredinibacter turnerae T7901]
          Length = 542

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 27/85 (31%), Gaps = 5/85 (5%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRY 96
            E+  +     G  + +       RC +C  C        A    +  +   G      Y
Sbjct: 459 EERNKSFDEVLGGLSEQEVQYEASRCYSCGNCFECDGCYGACPEHAIIKLGSGRF----Y 514

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEG 121
            ID  +C  CG C   CP  AI   
Sbjct: 515 QIDYSRCTGCGACTTQCPTAAIHMT 539


>gi|326391446|ref|ZP_08212982.1| NADH dehydrogenase (quinone) [Thermoanaerobacter ethanolicus JW
           200]
 gi|325992525|gb|EGD50981.1| NADH dehydrogenase (quinone) [Thermoanaerobacter ethanolicus JW
           200]
          Length = 596

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 15/97 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            +RY F+ +   +   ++           AL R+    ++C AC +C   CP  AI+   
Sbjct: 513 TIRY-FRDEYEAHIKEKRCPAGVC----QALLRFYIDPDKCKACGICAKNCPVNAISG-- 565

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
                   +  V Y ID  KCI CG C E CP  AI 
Sbjct: 566 --------KPKVPYVIDQDKCIKCGTCIEKCPFGAIY 594



 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 22/44 (50%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            I+         +  +R+ ID  KC  CG+C + CPV+AI   P
Sbjct: 524 HIKEKRCPAGVCQALLRFYIDPDKCKACGICAKNCPVNAISGKP 567


>gi|307266695|ref|ZP_07548223.1| NADH dehydrogenase (quinone) [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918297|gb|EFN48543.1| NADH dehydrogenase (quinone) [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 596

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 15/97 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            +RY F+ +   +   ++           AL R+    ++C AC +C   CP  AI+   
Sbjct: 513 TIRY-FRDEYEAHIKEKRCPAGVC----QALLRFYIDPDKCKACGICAKNCPVNAISG-- 565

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
                   +  V Y ID  KCI CG C E CP  AI 
Sbjct: 566 --------KPKVPYVIDQDKCIKCGTCIEKCPFGAIY 594



 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 22/44 (50%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            I+         +  +R+ ID  KC  CG+C + CPV+AI   P
Sbjct: 524 HIKEKRCPAGVCQALLRFYIDPDKCKACGICAKNCPVNAISGKP 567


>gi|197118360|ref|YP_002138787.1| dissimilatory sulfite reductase (desulfoviridin) subunit [Geobacter
           bemidjiensis Bem]
 gi|197087720|gb|ACH38991.1| dissimilatory sulfite reductase (desulfoviridin) subunit, putative
           [Geobacter bemidjiensis Bem]
          Length = 314

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 36/97 (37%), Gaps = 11/97 (11%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
           +   + FK       PF+   ++    G             CI+C LC   C   A+T+ 
Sbjct: 129 VTGHHKFKVGF-AGCPFDCPKSATNDVGLQGAVWPALDASGCISCGLCAKSCTEGALTMG 187

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           +  +             D  KCIYCG C + CP DA 
Sbjct: 188 ADNKPVF----------DTAKCIYCGDCIKVCPTDAW 214


>gi|52549204|gb|AAU83053.1| uncharacterized anaerobic dehydrogenase [uncultured archaeon
           GZfos26D6]
          Length = 396

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/102 (26%), Positives = 34/102 (33%), Gaps = 2/102 (1%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA-ITIESGPRCHDGTRRT 93
             P E    S          R+   +ERCI C LC  +C     ++  +           
Sbjct: 23  RCPEEGRIQSLALEYGVVKPRFVLEDERCILCGLCTRVCDELVGVSAINVISRGVEREVG 82

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAI-VEGPNFEFATETRQEL 134
             Y      CI CG C   CP DAI  E   +    E   EL
Sbjct: 83  TPYKELSDDCIGCGSCALVCPTDAIKREKNIYPTTAEDIAEL 124


>gi|118602834|ref|YP_904049.1| putative glutamate synthase (NADPH) small subunit [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
 gi|118567773|gb|ABL02578.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
          Length = 654

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 4/59 (6%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           C  C  C   CP  A+      +   G      Y+    KCI C +C + CP   I  G
Sbjct: 597 CFECDNCVMYCPQDAVFKVKKDKATLGRYVDTDYN----KCIGCHICADVCPTGYIQMG 651


>gi|20092967|ref|NP_619042.1| formylmethanofuran dehydrogenase, subunit F [Methanosarcina
           acetivorans C2A]
 gi|19918282|gb|AAM07522.1| formylmethanofuran dehydrogenase, subunit F [Methanosarcina
           acetivorans C2A]
          Length = 346

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 33/66 (50%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            ERC+ C LCE ICP   I +          +   + DID   C++CG C   CPV+AIV
Sbjct: 106 NERCVHCGLCEDICPQGCIEVTREISPDGKLKLVGKTDIDTECCVHCGWCAAVCPVNAIV 165

Query: 120 EGPNFE 125
               FE
Sbjct: 166 VEKPFE 171



 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRT---VRYDIDMIKCIYCGLCQEACPV 115
             E CIAC +C  +CP  A+ +    +  +        ++      +C++CGLC++ CP 
Sbjct: 62  EREECIACGICARVCPTGALELRQEGKTLNDRSYIFEAMKPTTVNERCVHCGLCEDICPQ 121

Query: 116 DAIVEGPN 123
             I     
Sbjct: 122 GCIEVTRE 129



 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 30/87 (34%), Gaps = 4/87 (4%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
               +       +     +    R+   E+ C  C  C   CP  AI  +          
Sbjct: 150 VHCGWCAAVCPVNAIVVEKPFEGRWTGSEDTCQTCHTCVETCPTNAIFNKKAKPGE---- 205

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAI 118
           +  +       CIYCG C  +CPV+AI
Sbjct: 206 KVEKISHRPDACIYCGACAVSCPVNAI 232



 Score = 42.0 bits (97), Expect = 0.030,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 1/71 (1%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM-IKCIYCGLCQEA 112
           R+     ERCI C  C   CP   + + +      G       ++    +CI CG+C   
Sbjct: 16  RQLIYKPERCIGCGTCVQACPKGILAVGAVGAVVRGLLDANFLEMKEREECIACGICARV 75

Query: 113 CPVDAIVEGPN 123
           CP  A+     
Sbjct: 76  CPTGALELRQE 86



 Score = 41.6 bits (96), Expect = 0.038,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 8/61 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E C+ C  C A+CP  AI +E             R+      C  C  C E CP +AI
Sbjct: 145 DTECCVHCGWCAAVCPVNAIVVEK--------PFEGRWTGSEDTCQTCHTCVETCPTNAI 196

Query: 119 V 119
            
Sbjct: 197 F 197



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 17/79 (21%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRR-----------------TVRYDIDM 100
           +  + CI C  C   CP  AI +       D  ++                   R + D 
Sbjct: 212 HRPDACIYCGACAVSCPVNAIDVRKTAILPDVEKKSVLEKKLLEAPVPEALLRTRLETDE 271

Query: 101 IKCIYCGLCQEACPVDAIV 119
             C+ CG C   CPV+A+ 
Sbjct: 272 YACLGCGNCVIVCPVNALY 290



 Score = 34.7 bits (78), Expect = 4.1,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 28/93 (30%), Gaps = 9/93 (9%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT---------IESGPRCHDG 89
           EK              R    E  C+ C  C  +CP  A+           +   +    
Sbjct: 250 EKKLLEAPVPEALLRTRLETDEYACLGCGNCVIVCPVNALYSRELASGYLNDMDEKALLE 309

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            +  +   ++   C   G C   CPV+AI    
Sbjct: 310 VKNGIISVVNQDVCGADGACAMICPVNAIWLVK 342


>gi|150402632|ref|YP_001329926.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C7]
 gi|150033662|gb|ABR65775.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           maripaludis C7]
          Length = 393

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 42/113 (37%), Gaps = 14/113 (12%)

Query: 9   SFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKL 68
           S  +L EFV       + +F   T             RFR    +    +  E+CI+C  
Sbjct: 4   SIWYLYEFVR------KKWFMRFTNAKSEKGSFIPPERFRRIPVI---FDLPEKCISCSA 54

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           C   CP+ AI +E                 D   CI CG C E+CP + +  G
Sbjct: 55  CAESCPSDAIKMEYNEEFKKNMPVF-----DAGSCINCGNCVESCPTNVLEMG 102



 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 8/64 (12%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            Y   EE+CI C++C   C          P     ++ T    I+   C+ CGLCQ ACP
Sbjct: 275 CYIVDEEKCIGCRICYRACNV--------PEAILISKETNLPYINPEYCVRCGLCQNACP 326

Query: 115 VDAI 118
           VDAI
Sbjct: 327 VDAI 330



 Score = 43.5 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 16/103 (15%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             L      EE C++C  CE  CP  AI+  +             Y+ID+  C+ C  C 
Sbjct: 116 PKLVNLLIDEEICVSCGSCENACPVNAISHNNNG----------LYEIDVNLCVSCKNCV 165

Query: 111 EACPV-DAIVEGPNFEFAT--ETRQELYYDKERLLNNGDRWES 150
           EACPV +AIV     + +   E  Q + ++ ERL   G  +E 
Sbjct: 166 EACPVENAIVTYDEPKLSEQIEIAQNIKFNMERL---GSDFEE 205



 Score = 37.8 bits (86), Expect = 0.50,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 22/57 (38%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
             +    A + +      +  RR         KCI C  C E+CP DAI    N EF
Sbjct: 16  WFMRFTNAKSEKGSFIPPERFRRIPVIFDLPEKCISCSACAESCPSDAIKMEYNEEF 72



 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 24/82 (29%), Gaps = 23/82 (28%)

Query: 56  YPNGEERCIACKLCEAICPA-QAITIESGPR----------------------CHDGTRR 92
           Y      C++CK C   CP   AI     P+                        D    
Sbjct: 151 YEIDVNLCVSCKNCVEACPVENAIVTYDEPKLSEQIEIAQNIKFNMERLGSDFEEDRDVI 210

Query: 93  TVRYDIDMIKCIYCGLCQEACP 114
           +    I    CI CG C + CP
Sbjct: 211 SEIPRIVPSLCIGCGNCVDVCP 232


>gi|294102539|ref|YP_003554397.1| NADH dehydrogenase (quinone) [Aminobacterium colombiense DSM 12261]
 gi|293617519|gb|ADE57673.1| NADH dehydrogenase (quinone) [Aminobacterium colombiense DSM 12261]
          Length = 597

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/100 (30%), Positives = 40/100 (40%), Gaps = 15/100 (15%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
             LRY F+ +   +   +K           AL  Y   ++ C  C LC   CP   I  +
Sbjct: 513 TTLRY-FRDEYVAHVKDKKCPAGVCS----ALIEYSIDQDLCKRCGLCARNCPVHCIPGD 567

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
                     R   Y ID  +CI CG C E CP  AI++G
Sbjct: 568 ----------RASGYTIDTERCIRCGTCFEKCPFGAIIKG 597


>gi|218779007|ref|YP_002430325.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760391|gb|ACL02857.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 362

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 27/77 (35%), Gaps = 11/77 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + CI C  C   C   AI+++                I    CI CG C   CP +AI
Sbjct: 292 DGDLCIGCGECLDRCQVAAISLDGDAAV-----------IAGEYCIGCGNCATVCPQEAI 340

Query: 119 VEGPNFEFATETRQELY 135
                 E A + R +  
Sbjct: 341 SMVRCAEKAPQPRPDFI 357


>gi|134045161|ref|YP_001096647.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C5]
 gi|132662786|gb|ABO34432.1| membrane-bound hydrogenase subunit ehaP [Methanococcus maripaludis
           C5]
          Length = 393

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/113 (26%), Positives = 42/113 (37%), Gaps = 14/113 (12%)

Query: 9   SFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKL 68
           S  +L EFV       + +F   T             RFR    +    +  E+CI+C  
Sbjct: 4   SIWYLYEFVR------KKWFMRFTNAKSEKGSFIPPKRFRKIPVI---FDLPEKCISCSA 54

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           C   CP+ AI +E                 D   CI CG C E+CP + +  G
Sbjct: 55  CAESCPSDAIKMEYNEEFKKNMPVF-----DAGSCINCGNCVESCPTNVLEMG 102



 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 8/64 (12%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            Y   EE+CI C++C   C          P     +  T    I+   C+ CGLCQ ACP
Sbjct: 275 CYLVDEEKCIGCRICYRACNV--------PEAVSISNETNLPYINPEYCVRCGLCQNACP 326

Query: 115 VDAI 118
           VDAI
Sbjct: 327 VDAI 330



 Score = 42.8 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 10/65 (15%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             L      EE C++C  CE  CP  AI+  S             Y+ID+  C+ C  C 
Sbjct: 116 PKLVNLLIDEEICVSCGSCENACPVDAISHNSNG----------LYEIDVNLCVSCKNCV 165

Query: 111 EACPV 115
           EACPV
Sbjct: 166 EACPV 170



 Score = 37.8 bits (86), Expect = 0.53,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 21/57 (36%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
             +    A + +         R+         KCI C  C E+CP DAI    N EF
Sbjct: 16  WFMRFTNAKSEKGSFIPPKRFRKIPVIFDLPEKCISCSACAESCPSDAIKMEYNEEF 72



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 16/59 (27%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           CI C  C  +C                        +++  C+ CG C E CP  AI  G
Sbjct: 221 CIGCGNCVDVCS----------------GSIDLERLEVTSCVRCGKCLEVCPTTAIRIG 263


>gi|150391791|ref|YP_001321840.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
 gi|149951653|gb|ABR50181.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
          Length = 598

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 29/68 (42%), Gaps = 9/68 (13%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            AL +Y    E C  C +C   CP   I+   G            Y ID  KCI CG C 
Sbjct: 537 KALAKYLVVSELCKKCGICAKKCPVDCISGVKGKE---------VYLIDQEKCIKCGACL 587

Query: 111 EACPVDAI 118
           EACP  AI
Sbjct: 588 EACPFKAI 595



 Score = 35.5 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 17/49 (34%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           +         +          +   +Y +    C  CG+C + CPVD I
Sbjct: 516 KYFRDEYDAHVHDKSCPAGVCKALAKYLVVSELCKKCGICAKKCPVDCI 564


>gi|189461429|ref|ZP_03010214.1| hypothetical protein BACCOP_02084 [Bacteroides coprocola DSM 17136]
 gi|189431958|gb|EDV00943.1| hypothetical protein BACCOP_02084 [Bacteroides coprocola DSM 17136]
          Length = 490

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110
               + CI+C +C   CP  AI     P       + +  D      ID  KCIYCG C 
Sbjct: 146 HIDHDTCISCGICHKSCPYHAIVYIPVPCEEACPVKAISKDENNIEHIDESKCIYCGKCL 205

Query: 111 EACPVDAIVE 120
            ACP  AI E
Sbjct: 206 NACPFGAIFE 215



 Score = 42.0 bits (97), Expect = 0.029,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 34/98 (34%), Gaps = 13/98 (13%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIA---CKLCEAI----------CPAQAITIESGP 84
            E    S   R     R        C+    C  C  +          C A++  +    
Sbjct: 74  DELTPLSEYARQALDRRNKLKENILCVIDEACSSCVQVNYEVSNLCRGCVARSCYMNCPK 133

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                 ++T +  ID   CI CG+C ++CP  AIV  P
Sbjct: 134 GAVHFDKKTGQAHIDHDTCISCGICHKSCPYHAIVYIP 171


>gi|19704753|ref|NP_604315.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19715079|gb|AAL95614.1| Pyruvate-flavodoxin oxidoreductase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 1190

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 37/120 (30%), Gaps = 20/120 (16%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI----------------TIE 81
           FE G+ +   RG        N  ++CI C  C  +CP  AI                   
Sbjct: 679 FENGTAAFEKRGVAVNVPIWN-LDKCIECNQCAYVCPHAAIRAFLITDEEKAASPVEFAT 737

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN---FEFATETRQELYYDK 138
                      T R  +  + C  CG C   CP  A+   P     E   + +    Y K
Sbjct: 738 KKANGKGLEDLTYRIQVTPLDCTGCGSCANVCPAKALDMNPIAVALENHEDEKAAYIYSK 797


>gi|323703081|ref|ZP_08114736.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
 gi|323531975|gb|EGB21859.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
          Length = 645

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 15/97 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            LR FF+ +   +   +             L  +     +CI+C +C   C   AI+ E 
Sbjct: 540 TLR-FFREEYIAHVRDKTCPAGVC----RELTDFVVDPAKCISCGICAKACGVGAISGEK 594

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
                        + ID  KCI CG CQ  CP +AI 
Sbjct: 595 KKP----------FYIDRQKCIKCGACQARCPKEAIF 621


>gi|167465595|ref|ZP_02330684.1| pyruvate ferredoxin oxidoreductase gamma-delta subunit
           [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322381244|ref|ZP_08055247.1| hypothetical protein PL1_0156 [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321154820|gb|EFX47091.1| hypothetical protein PL1_0156 [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 336

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++ CI C  C+  CP        G     G +      ID   C  C  C EACP  A+
Sbjct: 253 NQQDCINCAACDQSCPDFCFVWAEGEDKK-GRKHQFLQGIDYQYCKGCLKCVEACPTTAL 311

Query: 119 VEGPNFE 125
            +G   E
Sbjct: 312 SKGRETE 318


>gi|94266046|ref|ZP_01289766.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
 gi|93453406|gb|EAT03831.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
          Length = 677

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 6/62 (9%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C  C +CE  C   AI+ +             RY +D  +CI CG C   CP       P
Sbjct: 622 CRDCHICEHTCHYGAISRQDLGAGDY------RYVVDESRCIGCGFCAGVCPCGVWEMQP 675

Query: 123 NF 124
            +
Sbjct: 676 RW 677


>gi|257437722|ref|ZP_05613477.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Faecalibacterium
           prausnitzii A2-165]
 gi|257200029|gb|EEU98313.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Faecalibacterium
           prausnitzii A2-165]
          Length = 1181

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 28/99 (28%), Gaps = 15/99 (15%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ--------------AITIESGP 84
           E+G+++   RG            +C+ C  C  +C                 A       
Sbjct: 674 EQGASAYEKRGTAVNVPEW-DASKCVGCNQCAFVCSHATIRPFQLTADELAAAPAQTKSR 732

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                        +  + C+ CG C   CP  AI   P 
Sbjct: 733 DNRPANEYKFVMAVSPLDCMGCGECVTVCPTKAIAMVPQ 771


>gi|118580368|ref|YP_901618.1| cobyrinic acid a,c-diamide synthase [Pelobacter propionicus DSM
           2379]
 gi|118503078|gb|ABK99560.1| Cobyrinic acid a,c-diamide synthase [Pelobacter propionicus DSM
           2379]
          Length = 305

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 6/61 (9%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           +  CI C +C   C   A+ +E   R          + ID   C  CG+C   CPV  I 
Sbjct: 80  QSDCIGCGVCRRWCRFDAVNMEKNDRGE------TVFSIDPASCEGCGVCVRFCPVQVID 133

Query: 120 E 120
            
Sbjct: 134 F 134



 Score = 34.3 bits (77), Expect = 5.0,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 6/42 (14%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139
           I    CI CG+C+  C  DA+    N       R E  +  +
Sbjct: 78  ILQSDCIGCGVCRRWCRFDAVNMEKN------DRGETVFSID 113


>gi|31580611|gb|AAP51030.1| EchF [Desulfovibrio gigas]
          Length = 105

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 14/99 (14%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
             ++     K+T  YPF      P  RGE          E+CI C  C   CP+Q I+++
Sbjct: 9   TVVKNLINKKSTRPYPFVVREPFPDQRGEL-----YCDIEQCIFCGTCARKCPSQCISVD 63

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
                         +  D   C+YCG C+E CP   +  
Sbjct: 64  KE---------QGIWKCDPFACVYCGTCEEVCPTHCLHH 93


>gi|188585512|ref|YP_001917057.1| hydrogenase large subunit domain protein [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179350199|gb|ACB84469.1| hydrogenase large subunit domain protein [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 507

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 37/77 (48%), Gaps = 6/77 (7%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCG 107
           R+    +E+CI C  C+ +CP  AI+    P     T   V+ D      ID  KC+ CG
Sbjct: 138 RQAYINQEKCIECGKCKNMCPFNAISDVMRPCRSACTVDAVKVDGDRRISIDQDKCVSCG 197

Query: 108 LCQEACPVDAIVEGPNF 124
            C EACP  AI    NF
Sbjct: 198 ACIEACPFGAIASKSNF 214



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 20/64 (31%), Gaps = 3/64 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                  R    + C        +            R+     I+  KCI CG C+  CP
Sbjct: 102 CDKCPINRFTVTEACRGCVAHYCMESCPKDAISFINRQA---YINQEKCIECGKCKNMCP 158

Query: 115 VDAI 118
            +AI
Sbjct: 159 FNAI 162


>gi|108801828|ref|YP_642025.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Mycobacterium sp.
           MCS]
 gi|119870981|ref|YP_940933.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing
           protein [Mycobacterium sp. KMS]
 gi|108772247|gb|ABG10969.1| Pyruvate:ferredoxin (flavodoxin) oxidoreductase [Mycobacterium sp.
           MCS]
 gi|119697070|gb|ABL94143.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Mycobacterium sp. KMS]
          Length = 1191

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 30/100 (30%), Gaps = 24/100 (24%)

Query: 58  NGEERCIACKLCEAICPA--------QAITIESGP--------RCHDGTRRTVRYDIDMI 101
              + CI C  C  +CP          A  ++  P                     + + 
Sbjct: 687 WDPDTCIQCGNCAFVCPHSVIRTKLYDADRLDGAPGAFASAPLNAVGLPESRYTLQVYVE 746

Query: 102 KCIYCGLCQEACP--------VDAIVEGPNFEFATETRQE 133
            C  CGLC EACP          AI  GP      E R+ 
Sbjct: 747 DCTGCGLCVEACPAVAPGIPLTKAINLGPREPLVAEQREN 786


>gi|21227667|ref|NP_633589.1| molybdenum formylmethanofuran dehydrogenase subunit [Methanosarcina
           mazei Go1]
 gi|20906059|gb|AAM31261.1| molybdenum formylmethanofuran dehydrogenase subunit [Methanosarcina
           mazei Go1]
          Length = 346

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 1/76 (1%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            E C+ C LCE IC    I +          +   +  ID   C++CG C   CPV+AI 
Sbjct: 106 NESCVHCGLCEDICSQGCIEVTREISTDGKLKVIGKTHIDTECCVHCGWCAAVCPVNAIS 165

Query: 120 EGPNFEFATETRQELY 135
               FE    +R E  
Sbjct: 166 VEKPFE-GRWSRDENV 180



 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 31/87 (35%), Gaps = 4/87 (4%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
               +       +     +    R+   E  C  C  C  +CPA AI  +          
Sbjct: 150 VHCGWCAAVCPVNAISVEKPFEGRWSRDENVCQTCHTCIDVCPANAIFNKKAKSGE---- 205

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAI 118
           R  +       CIYCG C  ACPVDAI
Sbjct: 206 RVEKITHRPDACIYCGACAVACPVDAI 232



 Score = 41.2 bits (95), Expect = 0.051,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 1/71 (1%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI-DMIKCIYCGLCQEA 112
           R+     E+CI C  C   CP   ++I +      G       ++     C+ CG+C + 
Sbjct: 16  RQLVYQPEKCIGCGTCVQACPKGTLSIGAVGAVARGLLDADFLEMAKSEDCLVCGICAKV 75

Query: 113 CPVDAIVEGPN 123
           CP  A+     
Sbjct: 76  CPTGALELRQE 86



 Score = 40.9 bits (94), Expect = 0.069,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 8/69 (11%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             + +     E C+ C  C A+CP  AI++E             R+  D   C  C  C 
Sbjct: 137 KVIGKTHIDTECCVHCGWCAAVCPVNAISVEK--------PFEGRWSRDENVCQTCHTCI 188

Query: 111 EACPVDAIV 119
           + CP +AI 
Sbjct: 189 DVCPANAIF 197



 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 9/95 (9%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT---------IESGPRCH 87
           P EK         +    +    ++ C+ C  C  +CP  A            +   +  
Sbjct: 248 PLEKKLIEVPAPEDALRTQLETDDDACLGCGNCVIVCPVNAFDNRELAAGYLYDMDEKAI 307

Query: 88  DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            G +      ++  +C   G C   CPVDAI    
Sbjct: 308 LGVKNGKISVVNQERCGGDGTCALICPVDAIRLVK 342



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 17/77 (22%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRR-----------------TVRYDIDM 100
           +  + CI C  C   CP  AI +       +  ++                   + + D 
Sbjct: 212 HRPDACIYCGACAVACPVDAIDVRKTAILPEMEKKGPLEKKLIEVPAPEDALRTQLETDD 271

Query: 101 IKCIYCGLCQEACPVDA 117
             C+ CG C   CPV+A
Sbjct: 272 DACLGCGNCVIVCPVNA 288



 Score = 39.3 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM---IKCIYCGLCQEACPVDA 117
           E C+ C +C  +CP  A+ +    +         R          C++CGLC++ C    
Sbjct: 64  EDCLVCGICAKVCPTGALELRQEGKPLTDMSYISRAMRPTSVNESCVHCGLCEDICSQGC 123

Query: 118 IVEGPN 123
           I     
Sbjct: 124 IEVTRE 129



 Score = 33.9 bits (76), Expect = 8.1,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           ++  +      KCI CG C +ACP   +  G
Sbjct: 13  KKDRQLVYQPEKCIGCGTCVQACPKGTLSIG 43


>gi|261368692|ref|ZP_05981575.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Subdoligranulum
           variabile DSM 15176]
 gi|282569230|gb|EFB74765.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Subdoligranulum
           variabile DSM 15176]
          Length = 909

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 26/91 (28%), Gaps = 16/91 (17%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQ------------AITIESGPRCHDGTR---R 92
           RG   +        +CI C  C  +C               A   ES        +    
Sbjct: 676 RGTAVMVPEW-DPSKCIQCNNCAFVCSHATIRPFCLTADELAKAPESLKSADTKPKASEY 734

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                +  + C+ CG C   CP  AI   P 
Sbjct: 735 KFTIAVSPLDCMGCGECVTVCPTKAIEMKPQ 765


>gi|148265954|ref|YP_001232660.1| nitrite and sulphite reductase 4Fe-4S region [Geobacter
           uraniireducens Rf4]
 gi|146399454|gb|ABQ28087.1| nitrite and sulphite reductase 4Fe-4S region [Geobacter
           uraniireducens Rf4]
          Length = 315

 Score = 55.9 bits (133), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 10/83 (12%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            PF+   ++    G          +E CI+C LC   C   AI +    +          
Sbjct: 146 CPFDCPKSATNDVGFQGAIWPELSKEECISCGLCAKSCTEGAIAMGDDGKPVF------- 198

Query: 96  YDIDMIKCIYCGLCQEACPVDAI 118
                 KCIYCG C + CP +A 
Sbjct: 199 ---RADKCIYCGDCVKVCPTEAW 218



 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           CP       +      G +  +  ++   +CI CGLC ++C   AI  G +
Sbjct: 146 CPFDCPKSATN---DVGFQGAIWPELSKEECISCGLCAKSCTEGAIAMGDD 193


>gi|255021729|ref|ZP_05293769.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Acidithiobacillus
           caldus ATCC 51756]
 gi|254968869|gb|EET26391.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Acidithiobacillus
           caldus ATCC 51756]
          Length = 264

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 44/121 (36%), Gaps = 14/121 (11%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERC-IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           +         +  L     G   C   C  C A CP  AI + +G             ++
Sbjct: 17  RWPQRGPDGQDGVLGMPRWGPAACRTGCDACVAACPTGAIQVNAGKA-----------EV 65

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERL-LNNGDRWESEIVRNIV 157
           D  +CI C  C E CP  A+    ++ F    R++L + KE L    G      + R++ 
Sbjct: 66  DYGRCIVCQRCVEDCPEGAMTSSYDWAFGVRRREDLLW-KEALDSRVGQDLGKRVARSLR 124

Query: 158 T 158
            
Sbjct: 125 R 125


>gi|119872732|ref|YP_930739.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Pyrobaculum islandicum DSM 4184]
 gi|119674140|gb|ABL88396.1| pyruvate ferredoxin oxidoreductase, delta subunit [Pyrobaculum
           islandicum DSM 4184]
          Length = 103

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 1/75 (1%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G   LR   N  ERCI C+LC   CP   I  + G          V+Y+I+   C  CG+
Sbjct: 28  GWRTLRPVIND-ERCIRCQLCWLYCPEGTIVEKRGVFKVGNRTYDVKYEINYDYCKGCGI 86

Query: 109 CQEACPVDAIVEGPN 123
           C   CP  AI   P 
Sbjct: 87  CANECPTKAIEMVPE 101


>gi|325479368|gb|EGC82464.1| pyruvate synthase [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 1178

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 39/133 (29%), Gaps = 31/133 (23%)

Query: 24  LRYFFKA---------KTTINYPFE----KGSTSPRFRGEHALRRYPNGEERCIACKLCE 70
           +R   K            +   P++       TS   +   AL       E CI C  C 
Sbjct: 639 IRNMVKPIINLHEDDLPVSAYLPYDDGQYMPGTSQYEKRGIALFVPEWKIENCIQCNQCS 698

Query: 71  AICPAQAITI-----ESGPRCHDGT-----------RRTVRYDIDMIKCIYCGLCQEAC- 113
            +CP   I       E+     +G                R  +    C+ CG C + C 
Sbjct: 699 FVCPHATIRPFLLDEEAKKNAPEGFETKKAIGKGLENYEFRIQVSPYDCMGCGNCVDVCP 758

Query: 114 -PVDAIVEGPNFE 125
            P  A+   P  E
Sbjct: 759 APTKALEMKPIDE 771


>gi|212696805|ref|ZP_03304933.1| hypothetical protein ANHYDRO_01367 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676095|gb|EEB35702.1| hypothetical protein ANHYDRO_01367 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 502

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 7/77 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112
            +++CI C  C   CP  AI+    P       + ++ D      ID  KC+ CG C  A
Sbjct: 146 DQDKCIKCGKCVQACPYNAISHTKRPCAEACGVKAIKSDKLNRAEIDDDKCVACGRCITA 205

Query: 113 CPVDAI-VEGPNFEFAT 128
           CP  AI  +   ++ A 
Sbjct: 206 CPFGAISDKTEIYQLAK 222



 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 5/65 (7%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-----IDMIKCIYCGLCQEACPVDA 117
           C AC               + P  +   +  + Y      ID  KCI CG C +ACP +A
Sbjct: 105 CEACPENRVEVTNTCRACIAHPCVNVCPKNAITYTSKGSIIDQDKCIKCGKCVQACPYNA 164

Query: 118 IVEGP 122
           I    
Sbjct: 165 ISHTK 169


>gi|153809516|ref|ZP_01962184.1| hypothetical protein BACCAC_03834 [Bacteroides caccae ATCC 43185]
 gi|149127824|gb|EDM19047.1| hypothetical protein BACCAC_03834 [Bacteroides caccae ATCC 43185]
          Length = 489

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 28/68 (41%), Gaps = 6/68 (8%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQEA 112
             E CI+C +C   CP  AI     P       +           ID  KCIYCG C  A
Sbjct: 148 DHETCISCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDESKCIYCGKCMNA 207

Query: 113 CPVDAIVE 120
           CP  AI E
Sbjct: 208 CPFGAIFE 215



 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 8/70 (11%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           ++        C  C      C          P+     ++  +  ID   CI CG+C ++
Sbjct: 110 IQINYEITNLCRGC--VARSCYMNC------PKDAIRFKKNGQAMIDHETCISCGICHKS 161

Query: 113 CPVDAIVEGP 122
           CP  AIV  P
Sbjct: 162 CPYHAIVYIP 171


>gi|111018949|ref|YP_701921.1| ferredoxin--NADP(+) reductase [Rhodococcus jostii RHA1]
 gi|110818479|gb|ABG93763.1| probable ferredoxin--NADP(+) reductase [Rhodococcus jostii RHA1]
          Length = 553

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           + C     C + CP   I      R      +T    ID   CI CG C +ACPVDAI 
Sbjct: 7   QACCNDASCVSACPVNCIHPTPEERE---FAQTEMLHIDPETCIDCGACVDACPVDAIF 62


>gi|325847091|ref|ZP_08169917.1| 4Fe-4S binding domain protein [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481063|gb|EGC84108.1| 4Fe-4S binding domain protein [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 502

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 7/77 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112
            +++CI C  C   CP  AI+    P       + ++ D      ID  KC+ CG C  A
Sbjct: 146 DQDKCIKCGKCVQACPYNAISHTKRPCAEACGVKAIKSDKLNRAEIDDDKCVACGRCITA 205

Query: 113 CPVDAI-VEGPNFEFAT 128
           CP  AI  +   ++ A 
Sbjct: 206 CPFGAISDKTEIYQLAK 222



 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 5/65 (7%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-----IDMIKCIYCGLCQEACPVDA 117
           C AC               + P  +   +  + Y      ID  KCI CG C +ACP +A
Sbjct: 105 CEACPENRVEVTNTCRACIAHPCVNVCPKNAITYTSKGSIIDQDKCIKCGKCVQACPYNA 164

Query: 118 IVEGP 122
           I    
Sbjct: 165 ISHTK 169


>gi|145590459|ref|YP_001152461.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Pyrobaculum arsenaticum DSM 13514]
 gi|145282227|gb|ABP49809.1| pyruvate ferredoxin oxidoreductase, delta subunit [Pyrobaculum
           arsenaticum DSM 13514]
          Length = 102

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 1/75 (1%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G  ALR   +  +RC+ C+LC   CP   I    G           +Y+I+   C  CG+
Sbjct: 28  GWRALRPVIHD-DRCVRCQLCWLYCPEGTIVELKGIFKVGNRTYDTKYEINYDYCKGCGI 86

Query: 109 CQEACPVDAIVEGPN 123
           C   CP  AI   P 
Sbjct: 87  CANECPTKAIEMVPE 101


>gi|119870982|ref|YP_940934.1| putative glutamate synthase (NADPH) small subunit [Mycobacterium
           sp. KMS]
 gi|161407219|ref|YP_642026.2| putative glutamate synthase (NADPH) small subunit [Mycobacterium
           sp. MCS]
 gi|119697071|gb|ABL94144.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Mycobacterium sp. KMS]
          Length = 559

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 8/62 (12%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C  C  C   CP  AI   +             Y+    +C  CG C E CPV AI   
Sbjct: 504 NCFECDGCYGACPEDAIIKVAEGHHG--------YEFVYDRCTGCGACFEQCPVHAIEML 555

Query: 122 PN 123
           P 
Sbjct: 556 PE 557


>gi|254448496|ref|ZP_05061956.1| eleCtron transport complex, rnfabcdge type, c subunit [gamma
           proteobacterium HTCC5015]
 gi|198261879|gb|EDY86164.1| eleCtron transport complex, rnfabcdge type, c subunit [gamma
           proteobacterium HTCC5015]
          Length = 792

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 42/122 (34%), Gaps = 2/122 (1%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
           T   P  K +      G+      P   + CI C  C   CPA  +  +           
Sbjct: 331 TDELPIVKATNCILA-GQAGEIADPGHADPCIRCGACADACPADLLPQQLYWYSKSREFE 389

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEI 152
             + + ++  CI CG C   CP   I     + FA    +    +K +  +  +R +  +
Sbjct: 390 RAQDEYNLFDCIECGCCSYVCPSH-IPLVQYYRFAKTEIRNAEVEKRKAEHAKERHDFRL 448

Query: 153 VR 154
            R
Sbjct: 449 ER 450


>gi|160944252|ref|ZP_02091481.1| hypothetical protein FAEPRAM212_01761 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444434|gb|EDP21438.1| hypothetical protein FAEPRAM212_01761 [Faecalibacterium prausnitzii
           M21/2]
          Length = 1206

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 28/99 (28%), Gaps = 15/99 (15%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ--------------AITIESGP 84
           E+G+++   RG            +C+ C  C  +C                 A       
Sbjct: 699 EQGASAYEKRGTAVNVPEW-DAAKCVGCNQCAFVCSHATIRPFLLTADELAAAPAQTKSR 757

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                        +  + C+ CG C   CP  AI   P 
Sbjct: 758 DNKLTPEYKFVMAVSPLDCMGCGECVTVCPTKAITMVPQ 796


>gi|34762397|ref|ZP_00143398.1| Pyruvate-flavodoxin oxidoreductase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|237742092|ref|ZP_04572573.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. 4_1_13]
 gi|256845429|ref|ZP_05550887.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Fusobacterium sp.
           3_1_36A2]
 gi|294785275|ref|ZP_06750563.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Fusobacterium sp.
           3_1_27]
 gi|27887922|gb|EAA24989.1| Pyruvate-flavodoxin oxidoreductase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|229429740|gb|EEO39952.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. 4_1_13]
 gi|256718988|gb|EEU32543.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Fusobacterium sp.
           3_1_36A2]
 gi|294486989|gb|EFG34351.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Fusobacterium sp.
           3_1_27]
          Length = 1189

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 18/112 (16%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE--------------SG 83
           FE G+++   RG        N  ++CI C  C  +CP  AI                 + 
Sbjct: 676 FENGTSAFEKRGVAVDVPIWN-VDKCIQCNQCSYVCPHAAIRPFLINEDELKAAPNSFAT 734

Query: 84  PRCHDGTRRTVRYDIDMI--KCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
            +        + Y I +    C+ CG C   CP +A+   P  E + ET ++
Sbjct: 735 KKAAGKGLDGLVYRIQVSALDCVGCGSCANVCPANALDMRPIAE-SLETHED 785


>gi|226358185|ref|YP_002787924.1| formate dehydrogenase, alpha subunit [Deinococcus deserti VCD115]
 gi|226319828|gb|ACO47822.1| putative formate dehydrogenase, alpha subunit [Deinococcus deserti
           VCD115]
          Length = 999

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 3/84 (3%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---YD 97
                 +  +     Y    ++CI C  C   C    +         D   R +      
Sbjct: 127 PYHPKPYLKDETNPFYRYDPDQCILCGRCVEACQNLQVNETLTINWEDPHPRVLWDGGRP 186

Query: 98  IDMIKCIYCGLCQEACPVDAIVEG 121
           I+   C+ CG C   CP +A++E 
Sbjct: 187 INESSCVSCGHCVTVCPCNALMET 210



 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 22/75 (29%), Gaps = 9/75 (12%)

Query: 48  RGEHALRRYPNGEERCIAC----KLCEA-----ICPAQAITIESGPRCHDGTRRTVRYDI 98
           R     +   N    C  C      C       +   Q       P+ +        Y  
Sbjct: 85  RATAFDKILGNHLLYCTVCDNNNGNCVVHNTTALMKVQHQVTPYHPKPYLKDETNPFYRY 144

Query: 99  DMIKCIYCGLCQEAC 113
           D  +CI CG C EAC
Sbjct: 145 DPDQCILCGRCVEAC 159


>gi|295103724|emb|CBL01268.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric
           [Faecalibacterium prausnitzii SL3/3]
          Length = 1174

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 28/99 (28%), Gaps = 15/99 (15%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ--------------AITIESGP 84
           E+G+++   RG            +C+ C  C  +C                 A       
Sbjct: 667 EQGASAYEKRGTAVNVPEW-DAAKCVGCNQCAFVCSHATIRPFLLTADELAAAPAQTKSR 725

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                        +  + C+ CG C   CP  AI   P 
Sbjct: 726 DNKLTPEYKFVMAVSPLDCMGCGECVTVCPTKAITMVPQ 764


>gi|19704505|ref|NP_604067.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19714781|gb|AAL95366.1| Pyruvate-flavodoxin oxidoreductase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 1188

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 18/112 (16%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE--------------SG 83
           FE G+++   RG        N  ++CI C  C  +CP  AI                 + 
Sbjct: 675 FENGTSAFEKRGVAVDVPIWN-VDKCIQCNQCSYVCPHAAIRPFLINEDELKAAPNSFAT 733

Query: 84  PRCHDGTRRTVRYDIDMI--KCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
            +        + Y I +    C+ CG C   CP +A+   P  E + ET ++
Sbjct: 734 KKATGKGLDELVYRIQVSALDCVGCGSCANVCPANALDMRPIAE-SLETHED 784


>gi|227499381|ref|ZP_03929492.1| NADH dehydrogenase (ubiquinone) [Anaerococcus tetradius ATCC 35098]
 gi|227218585|gb|EEI83825.1| NADH dehydrogenase (ubiquinone) [Anaerococcus tetradius ATCC 35098]
          Length = 526

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/82 (37%), Positives = 40/82 (48%), Gaps = 12/82 (14%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           K  T P  R    L       E CI C  C+ +CPAQAI+ E             +++I+
Sbjct: 457 KTKTCPAKRCLSLLNYDI--GEACIGCGKCKRLCPAQAISGE----------VRNKHEIN 504

Query: 100 MIKCIYCGLCQEACPVDAIVEG 121
             KCI CG C+E CP+DAI  G
Sbjct: 505 QDKCIKCGQCKENCPIDAICLG 526


>gi|108803761|ref|YP_643698.1| 2-oxoacid:acceptor oxidoreductase subunit delta,
           pyruvate/2-ketoisovalerate [Rubrobacter xylanophilus DSM
           9941]
 gi|108765004|gb|ABG03886.1| 2-oxoacid:acceptor oxidoreductase, delta subunit,
           pyruvate/2-ketoisovalerate [Rubrobacter xylanophilus DSM
           9941]
          Length = 403

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 37/106 (34%), Gaps = 12/106 (11%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117
             + CI C+ C   CP +   +                 I+   C  CG+C + CPV D 
Sbjct: 289 NFDTCIKCRQCWIDCPDECFEVTEEGLHP----------INYEYCTGCGICSQVCPVEDC 338

Query: 118 IVEGPNFEFATE-TRQELYYDKERLLNNGDRWESEIVRNIVTDSPY 162
           IV   + EF  E  R      K+         E +I R  +    Y
Sbjct: 339 IVMVNDLEFIDEGDRDVYEMWKQDPEAYHRWREEKIARGRIEHHGY 384


>gi|237747571|ref|ZP_04578051.1| molybdopterin oxidoreductase [Oxalobacter formigenes OXCC13]
 gi|229378933|gb|EEO29024.1| molybdopterin oxidoreductase [Oxalobacter formigenes OXCC13]
          Length = 698

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 21/58 (36%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + CI C LCE  C              +G      +     KCI CG C   CP  AI
Sbjct: 562 DICIGCGLCELACIEVGAEALKMIETKNGRMVFNDFTTPAEKCIGCGACTSVCPTGAI 619


>gi|224024973|ref|ZP_03643339.1| hypothetical protein BACCOPRO_01704 [Bacteroides coprophilus DSM
           18228]
 gi|224018209|gb|EEF76207.1| hypothetical protein BACCOPRO_01704 [Bacteroides coprophilus DSM
           18228]
          Length = 462

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110
               + CI+C +C   CP  AI     P       + +  D      I+  KCIYCG C 
Sbjct: 147 HIDHDTCISCGICHKSCPYHAIVYIPVPCEEACPVKAISKDEHNIEHINEDKCIYCGKCL 206

Query: 111 EACPVDAIVE 120
            ACP  AI E
Sbjct: 207 NACPFGAIFE 216



 Score = 41.6 bits (96), Expect = 0.033,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 7/82 (8%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-------IDM 100
           RG+         +E C +C               +     +  +  V +D       ID 
Sbjct: 91  RGKIKENILCVIDEACSSCVQVNYEVSNLCRGCVARSCYMNCPKGAVHFDKKTGQAHIDH 150

Query: 101 IKCIYCGLCQEACPVDAIVEGP 122
             CI CG+C ++CP  AIV  P
Sbjct: 151 DTCISCGICHKSCPYHAIVYIP 172


>gi|217967308|ref|YP_002352814.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724]
 gi|217336407|gb|ACK42200.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724]
          Length = 596

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 36/97 (37%), Gaps = 15/97 (15%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
             L+Y F+ +   +   +K           AL  Y    E C  C +C   CP  AI  +
Sbjct: 512 TTLKY-FRDEYLAHIRDKKCPAKVCT----ALIHYEVIREECRKCSICFRNCPVGAIYKD 566

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                         Y ID  KC  CG+C + CP  AI
Sbjct: 567 EDG----------TYVIDQSKCTKCGICFQVCPFSAI 593


>gi|325294577|ref|YP_004281091.1| methyl-viologen-reducing hydrogenase delta subunit
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065025|gb|ADY73032.1| methyl-viologen-reducing hydrogenase delta subunit
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 765

 Score = 55.5 bits (132), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 7/89 (7%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI-------TIESGPRCHDGTRRTVRY 96
           S  F+ +   +      ++CIAC  CE +CP +         T                Y
Sbjct: 228 SGTFKVKIRRKSIKINPDKCIACGECEKVCPVEVPNEFNLGKTKRKAIYKPFPLAIPDVY 287

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
            ID   CI+CG C++ CP  AI      E
Sbjct: 288 HIDEAACIFCGECEKVCPTQAINLQAESE 316



 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 5/82 (6%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100
                  +G          +++C  C+ C   CP  AI+++ G    D        +ID 
Sbjct: 535 PKIYKDLKGREKKYYAQIDQDKCSRCETCLMCCPHGAISVKKGKTPEDNW-----IEIDP 589

Query: 101 IKCIYCGLCQEACPVDAIVEGP 122
             C  CGLC  ACP  AI    
Sbjct: 590 NLCRGCGLCYAACPSKAINFSN 611


>gi|325295368|ref|YP_004281882.1| NADH dehydrogenase subunit I [Desulfurobacterium thermolithotrophum
           DSM 11699]
 gi|325065816|gb|ADY73823.1| NADH dehydrogenase subunit I [Desulfurobacterium thermolithotrophum
           DSM 11699]
          Length = 169

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 12/118 (10%)

Query: 15  EFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP 74
           E V       +  F+ K T  +  +       +RG+H ++        CI C LC   CP
Sbjct: 12  EVVKKLIRITKAVFRPKATEVWLDKDIKRDYHYRGKHIIK-----AAICIGCGLCARTCP 66

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC---PVDAIVEGPNFEFATE 129
            + I +          +      +   +C++CG C++ C   P  AI     +    E
Sbjct: 67  VKCIEMIPTGVK----KPRAIPRVKASECMFCGFCEDVCPAKPEKAIKLTDIYAMYVE 120


>gi|296328384|ref|ZP_06870910.1| pyruvate:ferredoxin oxidoreductase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296154458|gb|EFG95250.1| pyruvate:ferredoxin oxidoreductase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 1188

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 18/112 (16%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE--------------SG 83
           FE G+++   RG        N  ++CI C  C  +CP  AI                 + 
Sbjct: 675 FENGTSAFEKRGVAVDVPIWN-VDKCIQCNQCSYVCPHAAIRPFLINEDELKAAPNSFAT 733

Query: 84  PRCHDGTRRTVRYDIDMI--KCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
            +        + Y I +    C+ CG C   CP +A+   P  E + ET ++
Sbjct: 734 KKATGKGLDELVYRIQVSALDCVGCGSCANVCPANALDMRPIAE-SLETHED 784


>gi|212704286|ref|ZP_03312414.1| hypothetical protein DESPIG_02341 [Desulfovibrio piger ATCC 29098]
 gi|212672248|gb|EEB32731.1| hypothetical protein DESPIG_02341 [Desulfovibrio piger ATCC 29098]
          Length = 193

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 10/108 (9%)

Query: 20  FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79
             +  R   +  +T  +P  +  T  R RG   +         C+ C +C  +C A AI 
Sbjct: 5   LKILFRNLLQGPSTDPFPLGETFTPERLRGRVKI-----DPNLCMGCGVCRHVCAAGAIN 59

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           I   P             +    C  C  C++ CP  A+    ++  A
Sbjct: 60  IRQKPDNSGY-----TITVWQDSCCLCASCRQYCPTGAMSITNDWHSA 102


>gi|329927647|ref|ZP_08281794.1| 2-oxoacid:acceptor oxidoreductase, gamma subunit,
           pyruvate/2-ketoisovalerate family [Paenibacillus sp.
           HGF5]
 gi|328938345|gb|EGG34736.1| 2-oxoacid:acceptor oxidoreductase, gamma subunit,
           pyruvate/2-ketoisovalerate family [Paenibacillus sp.
           HGF5]
          Length = 338

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 2/72 (2%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI-V 119
           E CI C  C+ +CP   I  E  P    G  +     ID   C  C  C EACP  A+  
Sbjct: 255 EDCIHCAACDTVCPDFCIVWEKKPD-KRGNMQMFMKGIDYQYCKGCLKCIEACPTTALAA 313

Query: 120 EGPNFEFATETR 131
                 +A + R
Sbjct: 314 MLEEPHYAEQHR 325



 Score = 34.7 bits (78), Expect = 3.9,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 4/46 (8%)

Query: 89  GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134
           G+R+    +  +  CI+C  C   CP   IV     E   + R  +
Sbjct: 243 GSRQGYLPEYKIEDCIHCAACDTVCPDFCIVW----EKKPDKRGNM 284


>gi|218780114|ref|YP_002431432.1| NADH dehydrogenase (quinone) [Desulfatibacillum alkenivorans AK-01]
 gi|218761498|gb|ACL03964.1| Putative NADH-quinone oxidoreductase, NADH-binding subunit NuoF
           [Desulfatibacillum alkenivorans AK-01]
          Length = 633

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 36/97 (37%), Gaps = 14/97 (14%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
           L   +FFK +   +   +K            L  Y    + C  C  C   CP  AIT E
Sbjct: 548 LTTLHFFKDEYLAHIKDQKCPAGVC----KDLITYSIDPDACTGCGACAKQCPNNAITGE 603

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                         + ID   CI CG+C+E C  +A+
Sbjct: 604 KKEP----------HTIDTDACIRCGICEETCKFNAV 630


>gi|85857933|ref|YP_460135.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus
           aciditrophicus SB]
 gi|85721024|gb|ABC75967.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus
           aciditrophicus SB]
          Length = 637

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 15/99 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            +RY F+++   +   +K           AL +Y   +E+C  C  C   CP +AI+ E 
Sbjct: 554 TIRY-FRSEYDAHIRSKKCPAGVC----KALIQYNIDKEKCTGCMACAKKCPVEAISGER 608

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
                          ID  KCI CG+C E C  DAI   
Sbjct: 609 KKAHE----------IDQAKCIKCGVCMETCKFDAITLS 637


>gi|152992442|ref|YP_001358163.1| hypothetical protein SUN_0848 [Sulfurovum sp. NBC37-1]
 gi|151424303|dbj|BAF71806.1| hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 199

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 10/106 (9%)

Query: 11  LFLKEFVGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69
           + L +         +  F      ++  +    +  R+RGEH +       E CI C  C
Sbjct: 1   MILFDIAKKVLRVSKALFTESPAKVDVRYTAMHSPARYRGEHRI-----DYETCIGCDSC 55

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
             ICP  AIT+    +     ++ +  ++++  CI+CGLC++ CP 
Sbjct: 56  NKICPTHAITM----KHLPFKKQNIVPEVNLSVCIFCGLCEDVCPT 97



 Score = 41.6 bits (96), Expect = 0.032,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 16/53 (30%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                + A         H   R    + ID   CI C  C + CP  AI    
Sbjct: 16  ALFTESPAKVDVRYTAMHSPARYRGEHRIDYETCIGCDSCNKICPTHAITMKH 68


>gi|325294930|ref|YP_004281444.1| NADH-ubiquinone oxidoreductase 23 kda subunit [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325065378|gb|ADY73385.1| NADH-ubiquinone oxidoreductase 23 kda subunit [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 137

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/135 (25%), Positives = 49/135 (36%), Gaps = 12/135 (8%)

Query: 24  LRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG 83
           L+  FK   T  YPFE     P +RG    +     +E CI C  CE +CP  AI     
Sbjct: 9   LKNLFKKPATHQYPFEPSPPPPNYRGNIVYK-----KELCIFCTKCELVCPPGAIRFTYN 63

Query: 84  PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLN 143
                       +  +   CIYCG C  ACP  A       E A    +E   + + +  
Sbjct: 64  EDGS------REFHYNPYLCIYCGECVRACPK-AGCLIQVEEMAPPATEEEIPNWDEIEK 116

Query: 144 NGDRWESEIVRNIVT 158
             +  +   ++    
Sbjct: 117 EAEESKKRWLKARKK 131


>gi|226361046|ref|YP_002778824.1| ferredoxin--NADP(+) reductase [Rhodococcus opacus B4]
 gi|226239531|dbj|BAH49879.1| putative ferredoxin--NADP(+) reductase [Rhodococcus opacus B4]
          Length = 553

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           + C     C + CP   I      R      +T    ID   CI CG C +ACPVDAI 
Sbjct: 7   QACCNDASCVSACPVNCIHPTPEERE---FAQTEMLHIDPETCIDCGACVDACPVDAIF 62


>gi|15896602|ref|NP_349951.1| nitroreductase family protein [Clostridium acetobutylicum ATCC 824]
 gi|15026443|gb|AAK81291.1|AE007833_4 Nitroreductase family protein fused to ferredoxin domain
           [Clostridium acetobutylicum ATCC 824]
 gi|325510763|gb|ADZ22399.1| Nitroreductase family protein fused to ferredoxin domain
           [Clostridium acetobutylicum EA 2018]
          Length = 273

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 16/103 (15%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 E+CI C  C   C  + I I  G              I+   CI CG C   CP
Sbjct: 1   MMTVDIEKCIGCGKCVKDCFPKDIEIVDGKA-----------KINNETCIKCGHCIAVCP 49

Query: 115 VDAIVEGPNFEFA---TETRQELYYDKERLLNNGDRWESEIVR 154
           ++A+    +++ +      ++E   D ++L+ N  ++   I +
Sbjct: 50  MNAVS-TDDYDMSEVKEYNKEEFSVDADKLM-NFIKFRRTIRQ 90


>gi|320353865|ref|YP_004195204.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Desulfobulbus propionicus DSM 2032]
 gi|320122367|gb|ADW17913.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfobulbus
           propionicus DSM 2032]
          Length = 443

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 37/101 (36%), Gaps = 17/101 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              RC  C LC   CP QAI +E         ++  R       C+ CG+C   CP  A+
Sbjct: 288 DSSRCQGCGLCAQACPIQAIWMEPANDPARPAKKIAR---IGSFCLGCGVCALRCPTGAL 344

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
                       RQ+     E      D +E  I++ +  D
Sbjct: 345 KLHE--------RQQQVVHPE------DSFERVILQALERD 371



 Score = 40.9 bits (94), Expect = 0.056,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 18/31 (58%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
            +D  +C  CGLC +ACP+ AI   P  + A
Sbjct: 286 QVDSSRCQGCGLCAQACPIQAIWMEPANDPA 316


>gi|310826466|ref|YP_003958823.1| NADH dehydrogenase (quinone) [Eubacterium limosum KIST612]
 gi|308738200|gb|ADO35860.1| NADH dehydrogenase (quinone) [Eubacterium limosum KIST612]
          Length = 599

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/81 (35%), Positives = 36/81 (44%), Gaps = 13/81 (16%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
           +EK   +   R    L  Y   EE+C  C +C   CP  AIT E              + 
Sbjct: 529 YEKRCPAGVCRN---LLNYVIDEEKCKGCGICAKKCPGDAITGEKKKP----------HV 575

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID  KC+ CG C EACP +AI
Sbjct: 576 IDAAKCVKCGACIEACPFNAI 596



 Score = 39.3 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 18/40 (45%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            I          R  + Y ID  KC  CG+C + CP DAI
Sbjct: 527 HIYEKRCPAGVCRNLLNYVIDEEKCKGCGICAKKCPGDAI 566


>gi|60683111|ref|YP_213255.1| putative iron hydrogenase [Bacteroides fragilis NCTC 9343]
 gi|60494545|emb|CAH09344.1| putative iron hydrogenase [Bacteroides fragilis NCTC 9343]
          Length = 489

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112
             + CI+C  C   CP  AI     P       + +  D      ID  KCIYCG C  A
Sbjct: 148 DHDACISCGKCHQSCPYHAIVFIPVPCEEACPVKAISKDENGIEHIDESKCIYCGKCLNA 207

Query: 113 CPVDAIVE 120
           CP  AI E
Sbjct: 208 CPFGAIFE 215



 Score = 40.5 bits (93), Expect = 0.081,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 31/97 (31%), Gaps = 12/97 (12%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------------ITIESGPR 85
            E  S S   R     +        C+  + C +                      + P+
Sbjct: 75  DELTSLSEYARQALERKNKQKENILCVIDEACSSCVQVNYEVTNLCRGCVARSCYMNCPK 134

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                R+  +  ID   CI CG C ++CP  AIV  P
Sbjct: 135 DAIRFRKNGQAKIDHDACISCGKCHQSCPYHAIVFIP 171


>gi|331697100|ref|YP_004333339.1| molybdopterin oxidoreductase Fe4S4 region [Pseudonocardia
           dioxanivorans CB1190]
 gi|326951789|gb|AEA25486.1| molybdopterin oxidoreductase Fe4S4 region [Pseudonocardia
           dioxanivorans CB1190]
          Length = 316

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 29/89 (32%), Gaps = 8/89 (8%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK----CIYCGLCQE 111
           Y     RCI C  C   C   A    +      G    +  + D       C+YCG C  
Sbjct: 176 YVRDYSRCILCYKCVKACGTDAQFTFAISAAGRGFDARIATEFDAELPDSACVYCGNCIG 235

Query: 112 ACPVDAIVEGPNFEFATETRQELYYDKER 140
            CP  A+      E     R+   +D E 
Sbjct: 236 VCPTGALKSVREHEL----READDWDPEE 260


>gi|296242044|ref|YP_003649531.1| dihydroorotate dehydrogenase family protein [Thermosphaera
           aggregans DSM 11486]
 gi|296094628|gb|ADG90579.1| dihydroorotate dehydrogenase family protein [Thermosphaera
           aggregans DSM 11486]
          Length = 403

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 6/62 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E++CI C  C+ +C   A+ +E       G +R    D    KC  CGLC   CP  AI
Sbjct: 346 DEKKCIGCGFCQQVCDYDAVHVEE----SGGGKRLAVVD--RTKCYGCGLCTSVCPTRAI 399

Query: 119 VE 120
             
Sbjct: 400 HF 401


>gi|257785126|ref|YP_003180343.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Atopobium parvulum
           DSM 20469]
 gi|257473633|gb|ACV51752.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Atopobium parvulum
           DSM 20469]
          Length = 1184

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/150 (21%), Positives = 51/150 (34%), Gaps = 29/150 (19%)

Query: 31  KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ-------------- 76
           K  ++  FE G+ +   RG   +    N  E+CI C  C  +CP                
Sbjct: 666 KNHVDGQFELGAAAYEKRGIAVVVPEWN-VEKCIQCNQCAYVCPHAVIRPFVLTDEEVAA 724

Query: 77  --AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE- 133
             A +                  I  + C  C  C   CP DA+   P  E   E++QE 
Sbjct: 725 APAQSQFKDAVGPKAKGYKFEIAISQLDCTGCSNCVYICPADALTMKPIEE--QESKQEI 782

Query: 134 ------LYYDKERLLNN---GDRWESEIVR 154
                    +K  L+ N   G +++  ++ 
Sbjct: 783 FDYAVNHVSEKTELVANNVKGSQFKKPLLE 812


>gi|226308457|ref|YP_002768417.1| ferredoxin--NADP(+) reductase [Rhodococcus erythropolis PR4]
 gi|226187574|dbj|BAH35678.1| probable ferredoxin--NADP(+) reductase [Rhodococcus erythropolis
           PR4]
          Length = 560

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 3/65 (4%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C     C  +CP   I              T    ID   CI CG C + CPV+AI  
Sbjct: 7   QPCCNDASCVDVCPVNCIHPTPDEAP---FATTEMLYIDPDTCIDCGACVDECPVEAIFP 63

Query: 121 GPNFE 125
               +
Sbjct: 64  DNELD 68


>gi|126437798|ref|YP_001073489.1| putative glutamate synthase (NADPH) small subunit [Mycobacterium
           sp. JLS]
 gi|126237598|gb|ABO00999.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Mycobacterium sp. JLS]
          Length = 558

 Score = 55.5 bits (132), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 8/62 (12%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C  C  C   CP  AI   +             Y+    +C  CG C E CPV AI   
Sbjct: 504 NCFECDGCYGACPEDAIIKVAEGHHG--------YEFVYDRCTGCGACFEQCPVHAIEML 555

Query: 122 PN 123
           P 
Sbjct: 556 PE 557


>gi|301164623|emb|CBW24182.1| putative iron hydrogenase [Bacteroides fragilis 638R]
          Length = 489

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112
             + CI+C  C   CP  AI     P       + +  D      ID  KCIYCG C  A
Sbjct: 148 DHDACISCGKCHQSCPYHAIVFIPVPCEEACPVKAISKDENGIEHIDESKCIYCGKCLNA 207

Query: 113 CPVDAIVE 120
           CP  AI E
Sbjct: 208 CPFGAIFE 215



 Score = 42.4 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 30/97 (30%), Gaps = 12/97 (12%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------------ITIESGPR 85
            E    S   R     +        C+  + C +                      + P+
Sbjct: 75  DELTPLSEYARQALERKNKQKENILCVIDEACSSCVQVNYEVTNLCRGCVARSCYMNCPK 134

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                R+  +  ID   CI CG C ++CP  AIV  P
Sbjct: 135 DAIRFRKNGQAKIDHDACISCGKCHQSCPYHAIVFIP 171


>gi|53715176|ref|YP_101168.1| putative hydrogenase [Bacteroides fragilis YCH46]
 gi|253566311|ref|ZP_04843765.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|265767004|ref|ZP_06094833.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|52218041|dbj|BAD50634.1| putative hydrogenase [Bacteroides fragilis YCH46]
 gi|251945415|gb|EES85853.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|263253381|gb|EEZ24857.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 489

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112
             + CI+C  C   CP  AI     P       + +  D      ID  KCIYCG C  A
Sbjct: 148 DHDACISCGKCHQSCPYHAIVFIPVPCEEACPVKAISKDENGIEHIDESKCIYCGKCLNA 207

Query: 113 CPVDAIVE 120
           CP  AI E
Sbjct: 208 CPFGAIFE 215



 Score = 42.4 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 30/97 (30%), Gaps = 12/97 (12%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------------ITIESGPR 85
            E    S   R     +        C+  + C +                      + P+
Sbjct: 75  DELTPLSEYARQALERKNKQKENILCVIDEACSSCVQVNYEVTNLCRGCVARSCYMNCPK 134

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                R+  +  ID   CI CG C ++CP  AIV  P
Sbjct: 135 DAIRFRKNGQAKIDHDACISCGKCHQSCPYHAIVFIP 171


>gi|220918887|ref|YP_002494191.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219956741|gb|ACL67125.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 259

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 36/107 (33%), Gaps = 11/107 (10%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
           T+ +P        RFRG   +                       A   E+ P        
Sbjct: 15  TVAFPDGPPRFPARFRGRPVVDPSRCEAGC-----------AGCAGCAEACPTEAILDPG 63

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139
           T    +D+ +C +CG C  ACP  AI    +   A  TR+ L   ++
Sbjct: 64  TATMRVDLGRCTFCGDCVTACPPGAIRFTGDHRLAARTREALVVSRD 110


>gi|256026642|ref|ZP_05440476.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. D11]
 gi|289764638|ref|ZP_06524016.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. D11]
 gi|289716193|gb|EFD80205.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. D11]
          Length = 1188

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 38/120 (31%), Gaps = 20/120 (16%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT----IESGPRCHDGTRRT 93
           FE G+ +   RG        N  ++CI C  C  +CP  AI      E           T
Sbjct: 677 FENGTAAFEKRGVAVNVPIWN-LDKCIECNQCSYVCPHAAIRAFLITEEEKAASPVEFAT 735

Query: 94  V------------RYDIDMIKCIYCGLCQEACPVDAIVEGPN---FEFATETRQELYYDK 138
                        R  +  + C  CG C   CP  A+   P     E   + +    Y K
Sbjct: 736 KKANGKGLEGLTYRIQVTPLDCTGCGSCANVCPAKALDMEPIAVALENHEDEKASYIYSK 795


>gi|237745305|ref|ZP_04575786.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. 7_1]
 gi|229432534|gb|EEO42746.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. 7_1]
          Length = 1188

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 38/120 (31%), Gaps = 20/120 (16%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT----IESGPRCHDGTRRT 93
           FE G+ +   RG        N  ++CI C  C  +CP  AI      E           T
Sbjct: 677 FENGTAAFEKRGVAVNVPIWN-LDKCIECNQCSYVCPHAAIRAFLITEEEKAASPVEFAT 735

Query: 94  V------------RYDIDMIKCIYCGLCQEACPVDAIVEGPN---FEFATETRQELYYDK 138
                        R  +  + C  CG C   CP  A+   P     E   + +    Y K
Sbjct: 736 KKANGKGLEGLTYRIQVTPLDCTGCGSCANVCPAKALDMEPIAVALENHEDEKASYIYSK 795


>gi|108772248|gb|ABG10970.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Mycobacterium sp.
           MCS]
          Length = 545

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 8/62 (12%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C  C  C   CP  AI   +             Y+    +C  CG C E CPV AI   
Sbjct: 490 NCFECDGCYGACPEDAIIKVAEGHHG--------YEFVYDRCTGCGACFEQCPVHAIEML 541

Query: 122 PN 123
           P 
Sbjct: 542 PE 543


>gi|222053901|ref|YP_002536263.1| nitrite and sulphite reductase 4Fe-4S region [Geobacter sp. FRC-32]
 gi|221563190|gb|ACM19162.1| nitrite and sulphite reductase 4Fe-4S region [Geobacter sp. FRC-32]
          Length = 315

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 10/83 (12%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            PF+   ++    G           + CI+C LC   C   AI + +  +          
Sbjct: 146 CPFDCPKSATNDVGFQGAIWPELHADECISCGLCAKSCTEGAIAMGADGKPEF------- 198

Query: 96  YDIDMIKCIYCGLCQEACPVDAI 118
              +   CIYCG C + CP +A 
Sbjct: 199 ---NAAACIYCGDCVKVCPTEAW 218



 Score = 35.5 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 7/59 (11%)

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG----PNFEFA 127
           CP       +      G +  +  ++   +CI CGLC ++C   AI  G    P F  A
Sbjct: 146 CPFDCPKSATN---DVGFQGAIWPELHADECISCGLCAKSCTEGAIAMGADGKPEFNAA 201


>gi|254304390|ref|ZP_04971748.1| pyruvate synthase [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
 gi|148324582|gb|EDK89832.1| pyruvate synthase [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
          Length = 1190

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 36/112 (32%), Gaps = 18/112 (16%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI----------------TIE 81
           FE G+ +   RG        N  ++CI C  C  +CP  AI                   
Sbjct: 679 FENGTAAFEKRGVAVDVPIWN-IDKCIECNQCAYVCPHAAIRAFLITEEEKTASPIEFTT 737

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
                      + R  +  + C  CG C   CP  A+   P    A E  ++
Sbjct: 738 KKANGKGLENLSYRIQVTPLDCTGCGSCANVCPAKALDMNPI-AVALENHED 788


>gi|296328475|ref|ZP_06870995.1| pyruvate:ferredoxin oxidoreductase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296154381|gb|EFG95179.1| pyruvate:ferredoxin oxidoreductase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 1190

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 36/112 (32%), Gaps = 18/112 (16%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI----------------TIE 81
           FE G+ +   RG        N  ++CI C  C  +CP  AI                   
Sbjct: 679 FENGTAAFEKRGVAVNVPIWN-LDKCIECNQCAYVCPHAAIRAFLITDEEKAASPVEFAT 737

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
                      T R  +  + C  CG C   CP  A+   P    A E  ++
Sbjct: 738 KKANGKGLEDLTYRIQVTPLDCTGCGSCANVCPAKALDMNPI-AVALENHED 788


>gi|237747483|ref|ZP_04577963.1| molybdopterin oxidoreductase [Oxalobacter formigenes HOxBLS]
 gi|229378834|gb|EEO28925.1| molybdopterin oxidoreductase [Oxalobacter formigenes HOxBLS]
          Length = 701

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 20/58 (34%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + CI C LCE  C               G      +     KCI CG C   CP  AI
Sbjct: 565 DICIGCGLCELACIEVGAEALKMVETKGGRMVFKDFTTPAEKCIGCGACTSVCPTGAI 622


>gi|291518661|emb|CBK73882.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric
           [Butyrivibrio fibrisolvens 16/4]
          Length = 1177

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 33/108 (30%), Gaps = 16/108 (14%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES--------------- 82
           FE G+ +   RG           E+CI C  C  +C    I                   
Sbjct: 673 FELGAAAYEKRGTAVTVPTW-DPEKCIQCNQCAFVCSHATIRPYMLSEDEVKAAPANIKL 731

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
                  +       +  + C+ CG C   CPV AI   P  + A E 
Sbjct: 732 ADTKPKASEYKYTMSVSPLDCMGCGECTTVCPVGAITMVPQADEADEQ 779


>gi|260495498|ref|ZP_05815624.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Fusobacterium sp.
           3_1_33]
 gi|260197035|gb|EEW94556.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Fusobacterium sp.
           3_1_33]
          Length = 1188

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 38/120 (31%), Gaps = 20/120 (16%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT----IESGPRCHDGTRRT 93
           FE G+ +   RG        N  ++CI C  C  +CP  AI      E           T
Sbjct: 677 FENGTAAFEKRGVAVNVPIWN-LDKCIECNQCSYVCPHAAIRAFLITEEEKAASPVEFAT 735

Query: 94  V------------RYDIDMIKCIYCGLCQEACPVDAIVEGPN---FEFATETRQELYYDK 138
                        R  +  + C  CG C   CP  A+   P     E   + +    Y K
Sbjct: 736 KKANGKGLEGLTYRIQVTPLDCTGCGSCANVCPAKALDMEPIAVALENHEDEKASYIYSK 795


>gi|222099246|ref|YP_002533814.1| Glutamate synthase (NADPH) GltB2 subunit [Thermotoga neapolitana
           DSM 4359]
 gi|221571636|gb|ACM22448.1| Glutamate synthase (NADPH) GltB2 subunit [Thermotoga neapolitana
           DSM 4359]
          Length = 507

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 30/92 (32%), Gaps = 13/92 (14%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R   A       + +CI C  C  +C   A   +                    KC+ C 
Sbjct: 4   RKVPAEFVVERDDYKCIRCLACVRVCSYGANYYDENANRVYTENY---------KCVGCH 54

Query: 108 LCQEACPVDAIVE-GPNFE---FATETRQELY 135
            C+  CP +AI     NF+    A  T + L 
Sbjct: 55  FCEAICPTEAITVRRNNFDIRPLAHWTPEHLI 86


>gi|198275297|ref|ZP_03207828.1| hypothetical protein BACPLE_01456 [Bacteroides plebeius DSM 17135]
 gi|198271880|gb|EDY96150.1| hypothetical protein BACPLE_01456 [Bacteroides plebeius DSM 17135]
          Length = 491

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 6/70 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQ 110
               ++CI+C +C   CP  AI     P       +           ID  KCIYCG C 
Sbjct: 147 QIDHDKCISCGICHKSCPYHAIVYIPVPCEEACPVKAISKDEHYIEHIDESKCIYCGKCL 206

Query: 111 EACPVDAIVE 120
            ACP  AI E
Sbjct: 207 NACPFGAIFE 216



 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 35/98 (35%), Gaps = 13/98 (13%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIA---CKLCEAI----------CPAQAITIESGP 84
            E    S   R     +        C+    C  C  +          C A++  +    
Sbjct: 75  DELTPLSEYARKTLERKERIKENILCVIDEACSSCVQVNYEVSNLCRGCVARSCYMNCPK 134

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                 ++T +  ID  KCI CG+C ++CP  AIV  P
Sbjct: 135 GAVHFNKKTGQAQIDHDKCISCGICHKSCPYHAIVYIP 172


>gi|88603830|ref|YP_504008.1| NADH-plastoquinone oxidoreductase subunit [Methanospirillum
           hungatei JF-1]
 gi|88189292|gb|ABD42289.1| Membrane bound hydrogenase subunit mbhN [Methanospirillum hungatei
           JF-1]
          Length = 134

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 19/110 (17%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
            K TI+ P     T  ++RG+            CI CK+C  +CPA AI           
Sbjct: 42  EKATIHPP---IPTPVKYRGKIL-----YDRNTCIGCKMCIRVCPANAIEFIPD------ 87

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR--QELYYD 137
              T R  I + +C++C  C + CP D +    +F  ATE R  +++  +
Sbjct: 88  ---TKRIRIWVTQCVFCSQCNDICPKDCLHMSSDFLLATEDRFNEDMIVE 134


>gi|317487064|ref|ZP_07945872.1| pyridine nucleotide-disulfide oxidoreductase [Bilophila wadsworthia
           3_1_6]
 gi|316921746|gb|EFV43024.1| pyridine nucleotide-disulfide oxidoreductase [Bilophila wadsworthia
           3_1_6]
          Length = 767

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 26/95 (27%), Gaps = 8/95 (8%)

Query: 37  PFEKGSTSPRFR--------GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88
           P EK                    L       +RC++C  C           E       
Sbjct: 669 PVEKKPVPSGQLSTAYFTRCPHGELPAANRDFDRCVSCGTCRDCRMCLESCPEGAISRET 728

Query: 89  GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                 RY  D  +CI CG+C   CP       PN
Sbjct: 729 LAGGAYRYVSDPDRCIGCGICSGVCPCGIWTMHPN 763


>gi|302381092|ref|ZP_07269552.1| pyruvate synthase [Finegoldia magna ACS-171-V-Col3]
 gi|302311139|gb|EFK93160.1| pyruvate synthase [Finegoldia magna ACS-171-V-Col3]
          Length = 1226

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 42/139 (30%), Gaps = 27/139 (19%)

Query: 28  FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA------------ 75
           FK +    +P     TS   +   AL       ++CI C  C  +CP             
Sbjct: 657 FKDRANGEFP---MGTSAYEKRCIALNVPEWQMDKCIQCNQCAYVCPHAVIRPFLLNEED 713

Query: 76  --QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLCQEACP--VDAIVEGPNFEFATE 129
              A       +        + + I      C  CG C + CP    A++  P  E    
Sbjct: 714 RKNAPETFESKKAVGKGFEDLTFRIQVSPADCTGCGNCADVCPAKEKALIMKPFEEQHIA 773

Query: 130 TRQELYY------DKERLL 142
            +    Y       KE L+
Sbjct: 774 QKDNWTYAVEKVGYKEDLM 792


>gi|167040762|ref|YP_001663747.1| NADH dehydrogenase (quinone) [Thermoanaerobacter sp. X514]
 gi|256750972|ref|ZP_05491855.1| NADH dehydrogenase (quinone) [Thermoanaerobacter ethanolicus CCSD1]
 gi|300914800|ref|ZP_07132116.1| NADH dehydrogenase [Thermoanaerobacter sp. X561]
 gi|307723966|ref|YP_003903717.1| NADH dehydrogenase (quinone) [Thermoanaerobacter sp. X513]
 gi|166855002|gb|ABY93411.1| NADH dehydrogenase (quinone) [Thermoanaerobacter sp. X514]
 gi|256750082|gb|EEU63103.1| NADH dehydrogenase (quinone) [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889735|gb|EFK84881.1| NADH dehydrogenase [Thermoanaerobacter sp. X561]
 gi|307581027|gb|ADN54426.1| NADH dehydrogenase (quinone) [Thermoanaerobacter sp. X513]
          Length = 596

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 15/97 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            +RY F+ +   +   ++           AL R+    ++C  C +C   CP  AI+ ++
Sbjct: 513 TIRY-FRDEYEAHIKEKRCPAGVC----QALLRFYIAPDKCKGCGICAKNCPVNAISGKT 567

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
                        Y ID  KCI CG C E CP  AI 
Sbjct: 568 KEP----------YVIDQDKCIKCGTCIEKCPFGAIY 594



 Score = 42.4 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 8/62 (12%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
            I+         +  +R+ I   KC  CG+C + CPV+AI        + +T++    D+
Sbjct: 524 HIKEKRCPAGVCQALLRFYIAPDKCKGCGICAKNCPVNAI--------SGKTKEPYVIDQ 575

Query: 139 ER 140
           ++
Sbjct: 576 DK 577


>gi|91772347|ref|YP_565039.1| formylmethanofuran dehydrogenase, subunit F [Methanococcoides
           burtonii DSM 6242]
 gi|91711362|gb|ABE51289.1| Molybdenum formylmethanofuran dehydrogenase subunit F
           [Methanococcoides burtonii DSM 6242]
          Length = 340

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 32/74 (43%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            + C+ C +CE ICP  AI            R      ID   C++CG C E CP +AI 
Sbjct: 100 NDNCVHCGVCEQICPQGAIETRQWLANDGSARIDGETIIDQETCVHCGWCSEVCPTNAIT 159

Query: 120 EGPNFEFATETRQE 133
               FE   E  ++
Sbjct: 160 VQKPFEGTWERAED 173



 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 4/87 (4%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
               +  E   T+     +     +   E+ C AC+ C  +CP  A+     P    G R
Sbjct: 144 VHCGWCSEVCPTNAITVQKPFEGTWERAEDVCQACRTCVDVCPCNALF---NPEWAPGER 200

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAI 118
                      CIYCG C  +CPV+AI
Sbjct: 201 VDKVAQ-RPDACIYCGACAVSCPVNAI 226



 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 1/64 (1%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            E+CI C  C  +CP   + I S      G       DI    CI CG+C + CP  A+ 
Sbjct: 18  PEKCIGCGTCTMVCPKDTLIIGSVGPVARGLINKEYLDIR-DTCITCGMCTKVCPTGALE 76

Query: 120 EGPN 123
              +
Sbjct: 77  MRED 80



 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 3/68 (4%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRC---HDGTRRTVRYDIDMIKCIYCGLCQ 110
           + Y +  + CI C +C  +CP  A+ +    +     +    ++        C++CG+C+
Sbjct: 51  KEYLDIRDTCITCGMCTKVCPTGALEMREDGKPVCDENFLCSSLAPTTVNDNCVHCGVCE 110

Query: 111 EACPVDAI 118
           + CP  AI
Sbjct: 111 QICPQGAI 118



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 9/71 (12%)

Query: 59  GEERCIACKLCEAICPAQAIT---------IESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
            E+ C+ C  C  +CP  A +          +   +     R      +D   C  CG C
Sbjct: 264 DEDACLGCGNCVIMCPVNAKSSKDLAAGSLNDLDEKPLLEVRNGTVKVVDQEACGSCGAC 323

Query: 110 QEACPVDAIVE 120
              CPV AI  
Sbjct: 324 ALICPVSAIWL 334



 Score = 38.9 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 17/75 (22%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK----------------- 102
            + CI C  C   CP  AI ++      D  ++ V     + K                 
Sbjct: 208 PDACIYCGACAVSCPVNAIDVQKTAIVPDMNKKAVFEKKLLNKPSATPVLTSVLVTDEDA 267

Query: 103 CIYCGLCQEACPVDA 117
           C+ CG C   CPV+A
Sbjct: 268 CLGCGNCVIMCPVNA 282



 Score = 38.2 bits (87), Expect = 0.40,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 11/77 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +E C+ C  C  +CP  AIT++              ++     C  C  C + CP +A+
Sbjct: 139 DQETCVHCGWCSEVCPTNAITVQK--------PFEGTWERAEDVCQACRTCVDVCPCNAL 190

Query: 119 VEGPNFEFATETRQELY 135
               N E+A   R +  
Sbjct: 191 F---NPEWAPGERVDKV 204


>gi|255011300|ref|ZP_05283426.1| putative hydrogenase [Bacteroides fragilis 3_1_12]
 gi|313149111|ref|ZP_07811304.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
 gi|313137878|gb|EFR55238.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
          Length = 489

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112
             + CI+C  C   CP  AI     P       + +  D      ID  KCIYCG C  A
Sbjct: 148 DHDACISCGKCHQSCPYHAIVFIPVPCEEACPVKAISKDENGIEHIDENKCIYCGKCLNA 207

Query: 113 CPVDAIVE 120
           CP  AI E
Sbjct: 208 CPFGAIFE 215



 Score = 41.2 bits (95), Expect = 0.045,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 30/97 (30%), Gaps = 12/97 (12%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------------ITIESGPR 85
            E    S   R     +        C+  + C +                      + P+
Sbjct: 75  DELTPLSEYARHALERKNEQKENILCVIDEACSSCVQVNYEITNLCRGCVARSCYMNCPK 134

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                R+  +  ID   CI CG C ++CP  AIV  P
Sbjct: 135 DAIRFRKNGQAKIDHDACISCGKCHQSCPYHAIVFIP 171


>gi|322419743|ref|YP_004198966.1| nitrite and sulphite reductase 4Fe-4S region [Geobacter sp. M18]
 gi|320126130|gb|ADW13690.1| nitrite and sulphite reductase 4Fe-4S region [Geobacter sp. M18]
          Length = 316

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 10/83 (12%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            PF+   ++    G           + CI+C LC   C   A+++    +          
Sbjct: 142 CPFDCPKSAINDVGFQGAVWPKLDADGCISCGLCAKSCAEGALSMGPDNKPLF------- 194

Query: 96  YDIDMIKCIYCGLCQEACPVDAI 118
              D  KCIYCG C + CP  A 
Sbjct: 195 ---DASKCIYCGDCIKVCPTGAW 214



 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           C A CP              G +  V   +D   CI CGLC ++C   A+  GP+
Sbjct: 138 CFAGCPFDCP---KSAINDVGFQGAVWPKLDADGCISCGLCAKSCAEGALSMGPD 189


>gi|220929108|ref|YP_002506017.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
           cellulolyticum H10]
 gi|219999436|gb|ACL76037.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
           cellulolyticum H10]
          Length = 266

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 20/124 (16%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T+ YP  K + S    G            +C  CK C ++CP  A+ +          +
Sbjct: 14  VTVEYPK-KNTKSTYITGIPEF-----DYSKCTRCKKCISVCPTGAVVMTDKD-----GQ 62

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL------YYDKERLLNNG 145
           R    D++  +CI+C  C+EAC   A+     FE A ++R+ L        DK+    NG
Sbjct: 63  RGKFPDVNADECIFCRFCEEACSNQAVSLSNKFELAQKSRELLRAAPLYVGDKD---VNG 119

Query: 146 DRWE 149
             +E
Sbjct: 120 IDYE 123



 Score = 40.5 bits (93), Expect = 0.088,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 21/56 (37%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            + + +     +T+E   +    T  T   + D  KC  C  C   CP  A+V   
Sbjct: 3   NIVKKLVQHGTVTVEYPKKNTKSTYITGIPEFDYSKCTRCKKCISVCPTGAVVMTD 58


>gi|119716585|ref|YP_923550.1| putative glutamate synthase (NADPH) small subunit [Nocardioides sp.
           JS614]
 gi|119537246|gb|ABL81863.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Nocardioides
           sp. JS614]
          Length = 544

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 25/62 (40%), Gaps = 8/62 (12%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C +C  C  +CP  AIT    P           Y ID+  C  CGLC   CP  AI   
Sbjct: 489 NCFSCDNCFGVCPDNAITKTGDPDTP--------YLIDLDYCKGCGLCAAECPAGAIRMA 540

Query: 122 PN 123
           P 
Sbjct: 541 PE 542


>gi|288940990|ref|YP_003443230.1| DsrL protein [Allochromatium vinosum DSM 180]
 gi|10120476|gb|AAG13082.1| DsrL [Allochromatium vinosum DSM 180]
 gi|288896362|gb|ADC62198.1| DsrL [Allochromatium vinosum DSM 180]
          Length = 654

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 20/59 (33%), Gaps = 4/59 (6%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           C  C  C   CP  A+          G      Y     KCI C +C + CP   I  G
Sbjct: 597 CFECDNCVIFCPQDAVFRVDKGSRTTGRYVDTDY----AKCIGCHICADVCPTGYIKMG 651


>gi|121535881|ref|ZP_01667679.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
 gi|121305546|gb|EAX46490.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
          Length = 368

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 11/71 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            + +CI C  C A+CP  AIT+                 I + KCI CG C   CPV A+
Sbjct: 191 DQAKCIGCAKCAAVCPENAITVSDKKAS-----------IAVDKCIGCGECLTVCPVKAV 239

Query: 119 VEGPNFEFATE 129
                 + A  
Sbjct: 240 GMDWATDLAVF 250



 Score = 40.5 bits (93), Expect = 0.091,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 3/61 (4%)

Query: 65  ACKLCEAICPAQAIT---IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
             K  E      AI    +   P      + + +  +D  KCI C  C   CP +AI   
Sbjct: 154 HFKGHEMAGFGGAIKNLAMGGAPAIGKKEQHSPKIMVDQAKCIGCAKCAAVCPENAITVS 213

Query: 122 P 122
            
Sbjct: 214 D 214


>gi|256544643|ref|ZP_05472015.1| periplasmic [Fe] hydrogenase 1 [Anaerococcus vaginalis ATCC 51170]
 gi|256399532|gb|EEU13137.1| periplasmic [Fe] hydrogenase 1 [Anaerococcus vaginalis ATCC 51170]
          Length = 489

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 7/77 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112
            +++CI C  C   CP  AI     P       + ++ D      ID  KC+ CG C  A
Sbjct: 133 DQDKCIKCGKCVEACPYNAIAHTKRPCAESCGVKAIKSDKLGRAEIDDDKCVACGRCITA 192

Query: 113 CPVDAI-VEGPNFEFAT 128
           CP  AI  +   ++ A 
Sbjct: 193 CPFGAISDKTEIYQLAK 209



 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 5/65 (7%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-----IDMIKCIYCGLCQEACPVDA 117
           C AC               + P  +   +  + Y      ID  KCI CG C EACP +A
Sbjct: 92  CEACPENRVEVTNTCRACIAHPCVNVCPKNAITYTSKGSIIDQDKCIKCGKCVEACPYNA 151

Query: 118 IVEGP 122
           I    
Sbjct: 152 IAHTK 156


>gi|225378477|ref|ZP_03755698.1| hypothetical protein ROSEINA2194_04145 [Roseburia inulinivorans DSM
           16841]
 gi|225209700|gb|EEG92054.1| hypothetical protein ROSEINA2194_04145 [Roseburia inulinivorans DSM
           16841]
          Length = 1181

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 33/108 (30%), Gaps = 16/108 (14%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES--------------- 82
           FE+G+++   RG            +CI C  C  +C    I                   
Sbjct: 673 FEQGASAYEKRGTAVTVPTW-DAAKCIQCNQCAFVCSHATIRPFMLSEDEVKAAPANIKL 731

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
                  +       +  + C+ CG C   CPV AI   P    A E 
Sbjct: 732 ADTKPKASEYKYTMSVSPLDCMGCGECITVCPVGAIEMVPQESQAEEQ 779


>gi|284162672|ref|YP_003401295.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Archaeoglobus
           profundus DSM 5631]
 gi|284012669|gb|ADB58622.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Archaeoglobus
           profundus DSM 5631]
          Length = 147

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/131 (25%), Positives = 49/131 (37%), Gaps = 16/131 (12%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNG 59
           M + + + S   LK  + A F  ++   +    T+ YP E        RG          
Sbjct: 1   MVVVKRSFSK--LKGHINAIFEAVKEVVRPSTITVQYPKEIR-FYENIRGYI-----QVE 52

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
              C+ C  C  ICPA AI +    +  +G        ID  KCI+C  C + CP  A+ 
Sbjct: 53  AISCLGCARCARICPANAIIM----KNVNGRYYPT---IDFGKCIFCHFCIDVCPTGALR 105

Query: 120 EGPNFEFATET 130
                + A   
Sbjct: 106 NTTVHDLAFNN 116


>gi|307594821|ref|YP_003901138.1| pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta
           [Vulcanisaeta distributa DSM 14429]
 gi|307550022|gb|ADN50087.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Vulcanisaeta distributa DSM 14429]
          Length = 117

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRC-HDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
            ++ CI C+ C   CP  AI     P    DG +  + Y+ID   C  CG+C   CPV A
Sbjct: 48  NQDLCIRCRTCWTYCPEPAILELDKPYITKDGRKYDITYEIDYDHCKGCGICAHECPVKA 107

Query: 118 IVEGPN 123
           I   P 
Sbjct: 108 ITMIPE 113


>gi|226304296|ref|YP_002764254.1| ferredoxin--NADP(+) reductase [Rhodococcus erythropolis PR4]
 gi|226183411|dbj|BAH31515.1| putative ferredoxin--NADP(+) reductase [Rhodococcus erythropolis
           PR4]
          Length = 563

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/95 (30%), Positives = 37/95 (38%), Gaps = 12/95 (12%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C     C A+CP   I             RT    ID   CI CG C +ACP+DAIV 
Sbjct: 7   QPCCNDASCVAVCPVNCIHPTPDESD---YARTEMLYIDPNTCIDCGACADACPIDAIVP 63

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRN 155
                 +     ++ Y    L  N D +E    RN
Sbjct: 64  D-----SDLDEGDMPY----LEINADYFEDPKNRN 89


>gi|169824082|ref|YP_001691693.1| pyruvate/ferredoxin oxidoreductase [Finegoldia magna ATCC 29328]
 gi|303235258|ref|ZP_07321876.1| pyruvate synthase [Finegoldia magna BVS033A4]
 gi|167830887|dbj|BAG07803.1| pyruvate/ferredoxin oxidoreductase [Finegoldia magna ATCC 29328]
 gi|302493572|gb|EFL53360.1| pyruvate synthase [Finegoldia magna BVS033A4]
          Length = 1226

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 42/139 (30%), Gaps = 27/139 (19%)

Query: 28  FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA------------ 75
           FK +    +P     TS   +   AL       ++CI C  C  +CP             
Sbjct: 657 FKDRANGEFP---MGTSAYEKRCIALNVPEWQMDKCIQCNQCAYVCPHAVIRPFLLNEED 713

Query: 76  --QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLCQEACP--VDAIVEGPNFEFATE 129
              A       +        + + I      C  CG C + CP    A++  P  E    
Sbjct: 714 RKNAPETFESKKAVGKGFEDLTFRIQVSPADCTGCGNCADVCPAKEKALIMKPFEEQHIA 773

Query: 130 TRQELYY------DKERLL 142
            +    Y       KE L+
Sbjct: 774 QKDNWTYAVEKVGYKEDLM 792


>gi|77920193|ref|YP_358008.1| glutamate synthase subunit alpha-like [Pelobacter carbinolicus DSM
           2380]
 gi|77546276|gb|ABA89838.1| glutamate synthase (NADPH) GltB3 subunit [Pelobacter carbinolicus
           DSM 2380]
          Length = 771

 Score = 55.1 bits (131), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 28/81 (34%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           K S  P+ RG   +    +  +RCI+C  C           E      +    T  Y  D
Sbjct: 686 KESFMPQNRGRFRVEDACSEVDRCISCGSCRDCTLCLETCPEGAIVREEKPDGTFEYVSD 745

Query: 100 MIKCIYCGLCQEACPVDAIVE 120
              CI CGLC   CP      
Sbjct: 746 EKYCIGCGLCAGICPCGIWQM 766


>gi|282165308|ref|YP_003357693.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Methanocella
           paludicola SANAE]
 gi|282157622|dbj|BAI62710.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Methanocella
           paludicola SANAE]
          Length = 196

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 37/105 (35%), Gaps = 14/105 (13%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           + AF      FF+   T++     G T+  FR              C  C  C   C + 
Sbjct: 7   LKAFGDLALNFFRKPVTVD--ESYGFTAENFRWLPRRNAD-----LCTGCGACNERCSSG 59

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           A ++                 ID ++CI+CG C + CP  A+   
Sbjct: 60  ATSLTDADGE-------RTVSIDGLRCIFCGRCADVCPERALELT 97


>gi|297625387|ref|YP_003687150.1| Pyruvate synthase/Pyruvate-flavodoxin oxidoreductase
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296921152|emb|CBL55699.1| Pyruvate synthase/Pyruvate-flavodoxin oxidoreductase
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 1255

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 24/82 (29%), Gaps = 16/82 (19%)

Query: 58  NGEERCIACKLCEAICPAQ---AITIESGPRCHDGTRRTVRY-------------DIDMI 101
             ++ CI C  C  +CP     A   +                             +   
Sbjct: 742 WDQDNCIQCGNCAFVCPHGVLRAKYYKPDVLDDAPKSFQAVPLNAAGLPDEMYTLQVFAE 801

Query: 102 KCIYCGLCQEACPVDAIVEGPN 123
            C  CGLC EACPV  I   P 
Sbjct: 802 DCTGCGLCVEACPVHPIGGDPE 823


>gi|164686811|ref|ZP_02210839.1| hypothetical protein CLOBAR_00407 [Clostridium bartlettii DSM
           16795]
 gi|164604201|gb|EDQ97666.1| hypothetical protein CLOBAR_00407 [Clostridium bartlettii DSM
           16795]
          Length = 646

 Score = 55.1 bits (131), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 10/63 (15%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E+CI C +C+ +CP   I  E   +            ID  +C +CG C  ACPVDAI  
Sbjct: 223 EKCIGCGICQRVCPVDCIAGEKKEQR----------RIDYNRCTHCGRCLSACPVDAITA 272

Query: 121 GPN 123
           G N
Sbjct: 273 GDN 275



 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 8/40 (20%)

Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140
            KCI CG+CQ  CPVD I        A E +++   D  R
Sbjct: 223 EKCIGCGICQRVCPVDCI--------AGEKKEQRRIDYNR 254


>gi|330996166|ref|ZP_08320056.1| 4Fe-4S binding domain protein [Paraprevotella xylaniphila YIT
           11841]
 gi|329573670|gb|EGG55261.1| 4Fe-4S binding domain protein [Paraprevotella xylaniphila YIT
           11841]
          Length = 480

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 28/69 (40%), Gaps = 6/69 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQ 110
               E+CI+C  C  +CP  AI     P       +           ID  KCIYCG C 
Sbjct: 147 YIDHEKCISCGRCHQVCPYHAIVYIPVPCEEACPVKAISKDEYGVEHIDPEKCIYCGKCL 206

Query: 111 EACPVDAIV 119
            ACP  AI 
Sbjct: 207 NACPFGAIF 215



 Score = 40.5 bits (93), Expect = 0.083,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 27/71 (38%), Gaps = 12/71 (16%)

Query: 54  RRYPNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           +        C  C  + C   CP  AI  +S  +            ID  KCI CG C +
Sbjct: 112 KINYEVTNLCRGCAARPCYNNCPKDAIHYDSEGKA----------YIDHEKCISCGRCHQ 161

Query: 112 ACPVDAIVEGP 122
            CP  AIV  P
Sbjct: 162 VCPYHAIVYIP 172


>gi|257081914|ref|ZP_05576275.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Enterococcus
           faecalis E1Sol]
 gi|256989944|gb|EEU77246.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Enterococcus
           faecalis E1Sol]
          Length = 1177

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 33/96 (34%), Gaps = 17/96 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96
            AL       ++C  C  C  +CP  AI       E       G                
Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYHI 738

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130
            + +  C  CGLC +ACPV   AI+  P +E   E 
Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773


>gi|17229403|ref|NP_485951.1| pyruvate flavodoxin dehydrogenase [Nostoc sp. PCC 7120]
 gi|17131001|dbj|BAB73610.1| pyruvate flavodoxin dehydrogenase [Nostoc sp. PCC 7120]
          Length = 1187

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 28/100 (28%), Gaps = 24/100 (24%)

Query: 58  NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRYDID--MI 101
              + CI C  C  +CP                A +        D     +++ I     
Sbjct: 688 WDTDVCIQCGKCVMVCPHSVIRSKVYEPEQLENAPSTFKSANAKDHDWHGLKFTIQVAAE 747

Query: 102 KCIYCGLCQEACPV--------DAIVEGPNFEFATETRQE 133
            C  CG+C + CP          AI   P        R+ 
Sbjct: 748 DCTGCGICVDVCPAKNKAQPRNKAINMQPQLPLRQAEREN 787


>gi|292491704|ref|YP_003527143.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Nitrosococcus
           halophilus Nc4]
 gi|291580299|gb|ADE14756.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Nitrosococcus
           halophilus Nc4]
          Length = 557

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/122 (22%), Positives = 44/122 (36%), Gaps = 17/122 (13%)

Query: 20  FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79
             L + + F+       P         F             + C  C  C ++CPA A+ 
Sbjct: 399 LRLAVEHLFQQAP-APQPIIPLPAGAPFGEIQV------DRQTCTLCLACVSVCPASAL- 450

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF-ATETRQELYYDK 138
                    G R  +R+      C+ CG+CQ ACP DAI   P   + +   R+    ++
Sbjct: 451 ------LDGGERPQLRF--IEANCVQCGVCQAACPEDAIALSPRMVYESIRNRETRVLNE 502

Query: 139 ER 140
           E 
Sbjct: 503 EE 504


>gi|75909255|ref|YP_323551.1| ferredoxin (flavodoxin) oxidoreductase [Anabaena variabilis ATCC
           29413]
 gi|90101419|sp|Q3M8N0|NIFJ_ANAVT RecName: Full=Pyruvate-flavodoxin oxidoreductase
 gi|75702980|gb|ABA22656.1| ferredoxin (flavodoxin) oxidoreductase [Anabaena variabilis ATCC
           29413]
          Length = 1190

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 28/100 (28%), Gaps = 24/100 (24%)

Query: 58  NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRYDID--MI 101
              + CI C  C  +CP                A +        D     +++ I     
Sbjct: 691 WDTDVCIQCGKCVMVCPHSVIRSKVYEPEQLENAPSTFKSANAKDHDWHGLKFTIQVAAE 750

Query: 102 KCIYCGLCQEACP--------VDAIVEGPNFEFATETRQE 133
            C  CG+C + CP          AI   P        R+ 
Sbjct: 751 DCTGCGICVDVCPAKNKAQPRKKAINMEPQLPLRQAEREN 790


>gi|16331975|ref|NP_442703.1| pyruvate oxidoreductase [Synechocystis sp. PCC 6803]
 gi|1709285|sp|P52965|NIFJ_SYNY3 RecName: Full=Putative pyruvate-flavodoxin oxidoreductase
 gi|1006618|dbj|BAA10774.1| pyruvate oxidoreductase [Synechocystis sp. PCC 6803]
          Length = 1199

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/138 (20%), Positives = 40/138 (28%), Gaps = 33/138 (23%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIE 81
           YP        R  G       P+    C+ C  C  +CP                A    
Sbjct: 666 YPTATTQWEKRNVGHEIPVWDPD---VCVQCGKCVIVCPHAVIRGKVYEEAELANAPVSF 722

Query: 82  SGPRCHDGTRRTVRYDID--MIKCIYCGLCQEACPV--------DAIVEGPNFEFATETR 131
                 D   +  ++ I      C  CG+C + CP          AI   P      + R
Sbjct: 723 KFTNAKDHDWQGSKFTIQVAPEDCTGCGICVDVCPAKNKSQPRLRAINMAPQLPLREQER 782

Query: 132 Q--ELYYDKERLLNNGDR 147
           +  + + D    L N DR
Sbjct: 783 ENWDFFLD----LPNPDR 796


>gi|319949121|ref|ZP_08023214.1| putative ferredoxin reductase [Dietzia cinnamea P4]
 gi|319437231|gb|EFV92258.1| putative ferredoxin reductase [Dietzia cinnamea P4]
          Length = 551

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/100 (29%), Positives = 34/100 (34%), Gaps = 7/100 (7%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + C A   C   CP   I                   ID + C+ CG C  ACP
Sbjct: 1   MPHVITQACCADASCVHACPVNCIHPTPDEPD---FATAEMLYIDPVSCVDCGACVGACP 57

Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVR 154
           V AIV  P+ E A E    L  + E  L   DR      R
Sbjct: 58  VGAIV--PHTELAPEQHDFLQINAE--LTGDDRPSRPQAR 93


>gi|288940021|ref|YP_003442261.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Allochromatium
           vinosum DSM 180]
 gi|288895393|gb|ADC61229.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Allochromatium
           vinosum DSM 180]
          Length = 1193

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 29/99 (29%), Gaps = 25/99 (25%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC------ 86
           T    FEK           AL+     E  C  C  C  +CP  AI  +  P        
Sbjct: 676 TGTTRFEKRQL--------ALQLPKWDENLCTQCGKCPLVCPHAAIRAKVYPAALTNGAP 727

Query: 87  -----------HDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                             V Y I    C  CGLC E CP
Sbjct: 728 ASFKHAAIKGKDFPEGYRVSYQIAPDDCTGCGLCAEVCP 766


>gi|253576872|ref|ZP_04854197.1| pyruvate/ketoisovalerate oxidoreductase [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251843739|gb|EES71762.1| pyruvate/ketoisovalerate oxidoreductase [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 343

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 1/65 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + CI C  C+++CP      E+G     G  +     ID   C  C  C E CP  A+
Sbjct: 265 DTDSCIHCANCDSVCPDLCFVWEAGEDKK-GRPQMFLSGIDYQYCKGCLKCVEICPTGAL 323

Query: 119 VEGPN 123
                
Sbjct: 324 SMRRE 328


>gi|20089203|ref|NP_615278.1| formylmethanofuran dehydrogenase, subunit F [Methanosarcina
           acetivorans C2A]
 gi|19914078|gb|AAM03758.1| formylmethanofuran dehydrogenase, subunit F [Methanosarcina
           acetivorans C2A]
          Length = 346

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 1/76 (1%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            E C+ C LCE ICP   I +          +   + +ID   C++CG C   CPV+AI 
Sbjct: 106 NENCVHCGLCEDICPQGCIEVTREISGDGSLKLVGKTNIDTECCVHCGWCAAVCPVNAIS 165

Query: 120 EGPNFEFATETRQELY 135
               F  A  TR E  
Sbjct: 166 VEKPFAGA-WTRDENV 180



 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 30/87 (34%), Gaps = 4/87 (4%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
               +       +     +     +   E  C  C  C  +CPA AI  +          
Sbjct: 150 VHCGWCAAVCPVNAISVEKPFAGAWTRDENVCQTCHTCIDVCPANAIFNKKAKSGE---- 205

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAI 118
           R  +       CIYCG C  +CPVDAI
Sbjct: 206 RVEKITHRPDACIYCGACAVSCPVDAI 232



 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 3/66 (4%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRT---VRYDIDMIKCIYCGLCQEACPVDA 117
           E C+ C +C  +CP  A+ +    +  + T      V+       C++CGLC++ CP   
Sbjct: 64  EECLVCGICARVCPTGALELRQEGKPLNDTSYISKAVKPTSVNENCVHCGLCEDICPQGC 123

Query: 118 IVEGPN 123
           I     
Sbjct: 124 IEVTRE 129



 Score = 40.9 bits (94), Expect = 0.060,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 17/78 (21%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRR-----------------TVRYDIDM 100
           +  + CI C  C   CP  AI +       +  ++                   R + D 
Sbjct: 212 HRPDACIYCGACAVSCPVDAIDVRKTAILPEMEKKGPLEKKLLDAPVPEALLRTRLETDE 271

Query: 101 IKCIYCGLCQEACPVDAI 118
             C+ CG C   CPV+A+
Sbjct: 272 AACLGCGNCVIVCPVNAL 289



 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 8/63 (12%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               E C+ C  C A+CP  AI++E                 D   C  C  C + CP +
Sbjct: 143 NIDTECCVHCGWCAAVCPVNAISVEKPFAGAW--------TRDENVCQTCHTCIDVCPAN 194

Query: 117 AIV 119
           AI 
Sbjct: 195 AIF 197



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 1/65 (1%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI-DMIKCIYCGLCQEACPVDAI 118
            E CI C  C   CP   + + +      G       ++    +C+ CG+C   CP  A+
Sbjct: 22  PEICIGCGTCVQACPKGTLAVGAVGVIARGLLDADFLEMTKKEECLVCGICARVCPTGAL 81

Query: 119 VEGPN 123
                
Sbjct: 82  ELRQE 86



 Score = 38.2 bits (87), Expect = 0.35,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 28/95 (29%), Gaps = 9/95 (9%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---------ESGPRCH 87
           P EK              R    E  C+ C  C  +CP  A+           +   +  
Sbjct: 248 PLEKKLLDAPVPEALLRTRLETDEAACLGCGNCVIVCPVNALDNRELASGYLNDMDEKAL 307

Query: 88  DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
              R      ++   C   G C   CPV+AI    
Sbjct: 308 LEVRNGKVSVVNQEVCGGDGTCALICPVNAIWLVK 342


>gi|307596042|ref|YP_003902359.1| pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta
           [Vulcanisaeta distributa DSM 14429]
 gi|307551243|gb|ADN51308.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Vulcanisaeta distributa DSM 14429]
          Length = 105

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 1/66 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGP-RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
            ++ CI C++C   CP  AI     P     G +  + Y+ID   C  CG+C   CPV A
Sbjct: 37  DQDACIRCRICWMYCPEPAILELKKPYVTKTGKKYDLTYEIDYDHCKGCGICAHECPVKA 96

Query: 118 IVEGPN 123
           I   P 
Sbjct: 97  IKMVPE 102


>gi|262201358|ref|YP_003272566.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Gordonia bronchialis DSM 43247]
 gi|262084705|gb|ACY20673.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Gordonia
           bronchialis DSM 43247]
          Length = 527

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 3/59 (5%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           + C +   C ++CP   I      R   G   +    ID   CI CG C +ACPVDAI 
Sbjct: 6   QSCCSDAACVSVCPVNCIHPTPEER---GFGSSDILHIDPEACIDCGACADACPVDAIY 61


>gi|89093291|ref|ZP_01166241.1| 4Fe-4S ferredoxin, iron-sulfur binding [Oceanospirillum sp. MED92]
 gi|89082587|gb|EAR61809.1| 4Fe-4S ferredoxin, iron-sulfur binding [Oceanospirillum sp. MED92]
          Length = 349

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/158 (22%), Positives = 54/158 (34%), Gaps = 12/158 (7%)

Query: 9   SFLFLK---EFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
           S++FL    +F+    L L    +       P    +    FR     R    G  RC  
Sbjct: 200 SYMFLSILGDFLFGLTLALAMTLRQPFCRICP--MLALHAVFRKLGLARLVKKGTSRCDK 257

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           C LC   CP     ++S     + TR     DI +  C  CG C E CP   +++     
Sbjct: 258 CGLCAEACPMDIRELQSEFNDVEKTR-----DITLPDCTLCGRCVEFCPDKDVLQLRYLN 312

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               +    Y+ K +       W+   + N+      R
Sbjct: 313 IPVFSADPKYFKKRK--KAQKHWDEIKLINLDAGKKVR 348


>gi|332880702|ref|ZP_08448375.1| 4Fe-4S binding domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332681336|gb|EGJ54260.1| 4Fe-4S binding domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 480

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 28/69 (40%), Gaps = 6/69 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQ 110
               E+CI+C  C  +CP  AI     P       +           ID  KCIYCG C 
Sbjct: 147 YIDHEKCISCGRCHQVCPYHAIVYIPVPCEEACPVKAISKDEYGVEHIDPEKCIYCGKCL 206

Query: 111 EACPVDAIV 119
            ACP  AI 
Sbjct: 207 NACPFGAIF 215



 Score = 40.5 bits (93), Expect = 0.090,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 27/71 (38%), Gaps = 12/71 (16%)

Query: 54  RRYPNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           +        C  C  + C   CP  AI  +S  +            ID  KCI CG C +
Sbjct: 112 KINYEVTNLCRGCAARPCYNNCPKDAIHYDSEGKA----------YIDHEKCISCGRCHQ 161

Query: 112 ACPVDAIVEGP 122
            CP  AIV  P
Sbjct: 162 VCPYHAIVYIP 172


>gi|158522287|ref|YP_001530157.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Desulfococcus oleovorans Hxd3]
 gi|158511113|gb|ABW68080.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Desulfococcus oleovorans Hxd3]
          Length = 776

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 6/66 (9%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C  C +C   CP  AI+    P           Y++D   CI CG C  ACP       
Sbjct: 716 NCRDCGICVTACPQSAISRAEKPDSGFA------YEVDETLCIGCGFCAGACPCGVWGLV 769

Query: 122 PNFEFA 127
           PN E +
Sbjct: 770 PNTELS 775



 Score = 34.7 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 14/40 (35%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +      DG  +          C  CG+C  ACP  AI
Sbjct: 693 YFDPRLTGFDGMDQCGAQCASCGNCRDCGICVTACPQSAI 732


>gi|238923844|ref|YP_002937360.1| pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin
           oxidoreductase, alpha subunit [Eubacterium rectale ATCC
           33656]
 gi|238875519|gb|ACR75226.1| pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin
           oxidoreductase, alpha subunit [Eubacterium rectale ATCC
           33656]
 gi|291524555|emb|CBK90142.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric
           [Eubacterium rectale DSM 17629]
 gi|291527981|emb|CBK93567.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric
           [Eubacterium rectale M104/1]
          Length = 1185

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 27/94 (28%), Gaps = 15/94 (15%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAIT---------------IESGPRCHDGTRRTVRY 96
           A+       E+CI C  C  +C    I                ++               
Sbjct: 686 AVTVPQWDPEKCIQCNNCAFVCSHATIRPFLLTDDEVKAAPDNMKVADMKPKAGAYKYTM 745

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
            +  + C+ CG C   CP  AI   P    A E 
Sbjct: 746 SVSPLDCMGCGECITVCPTAAISMQPQESQAAEQ 779


>gi|332686332|ref|YP_004456106.1| pyruvate-flavodoxin oxidoreductase [Melissococcus plutonius ATCC
           35311]
 gi|332370341|dbj|BAK21297.1| pyruvate-flavodoxin oxidoreductase [Melissococcus plutonius ATCC
           35311]
          Length = 1114

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 34/95 (35%), Gaps = 20/95 (21%)

Query: 58  NGEERCIACKLCEAICPAQAIT-----IESGPRCHDGTRR---------TVRYDIDMIKC 103
              E C  C  C  +CP  AI       E      DG              R  + +  C
Sbjct: 688 WNSEFCTMCNACSFVCPHAAIRPILADQEEMENAPDGFIVKNMRGQDGLMYRIQVSIEDC 747

Query: 104 IYCGLCQEACPV--DAIVEGPNFEFATETRQELYY 136
             CGLC EACPV   A+   P      E ++++ +
Sbjct: 748 TGCGLCVEACPVKDKALKMEPI----EEQKEQMIH 778


>gi|257439152|ref|ZP_05614907.1| Fe-hydrogenase large subunit family protein [Faecalibacterium
           prausnitzii A2-165]
 gi|257198403|gb|EEU96687.1| Fe-hydrogenase large subunit family protein [Faecalibacterium
           prausnitzii A2-165]
          Length = 528

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 34/86 (39%), Gaps = 8/86 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112
            +E+CI C  C  +CP  AI     P         +  D      ID  KC+ CG C   
Sbjct: 163 DQEKCIKCGRCATVCPYNAIVKTERPCAAACGMGAIHSDELGRAEIDYSKCVSCGQCLVN 222

Query: 113 CPVDAI-VEGPNFEF-ATETRQELYY 136
           CP  AI  +G  ++      R +  Y
Sbjct: 223 CPFGAIADKGQIYQLIQGFNRGDRIY 248



 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 12/85 (14%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P          R    L +  +  + C+A   C  +CP +AIT ESG           R 
Sbjct: 113 PLVNVIKFACNRCPEKLVKVSDLCQGCLA-HPCMEVCPKKAITWESG-----------RS 160

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEG 121
            ID  KCI CG C   CP +AIV+ 
Sbjct: 161 TIDQEKCIKCGRCATVCPYNAIVKT 185


>gi|20093747|ref|NP_613594.1| formylmethanofuran dehydrogenase subunit F, ferredoxin containing
           [Methanopyrus kandleri AV19]
 gi|19886647|gb|AAM01524.1| Probable formylmethanofuran dehydrogenase subunit F, ferredoxin
           containing [Methanopyrus kandleri AV19]
          Length = 357

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/73 (41%), Positives = 38/73 (52%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G+  +      EE+CI CK CE  CPA AIT+E               ++D  KC+YCG+
Sbjct: 142 GDLVMGEIEIDEEKCIYCKACEEACPADAITVERPKPSAADPEPEFTIEVDEDKCVYCGV 201

Query: 109 CQEACPVDAIVEG 121
           C   CPVDAI  G
Sbjct: 202 CMRTCPVDAIKVG 214



 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 32/83 (38%), Gaps = 2/83 (2%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
                     R     R       +C AC +CEA CP  AI++   P      +     D
Sbjct: 11  EVSPPLLRVVRKGVEERELVINTSKCAACGICEAACPVGAISV--APPSAVVRKGEDPID 68

Query: 98  IDMIKCIYCGLCQEACPVDAIVE 120
           +D  KC+ CG+C   CP D I  
Sbjct: 69  VDESKCVLCGICAFVCPYDVIQL 91



 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 7/74 (9%)

Query: 59  GEERCIACKLCEAICPAQA-------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            E++C+ C +C   CP  A           +              D+D   C+YCG C  
Sbjct: 192 DEDKCVYCGVCMRTCPVDAIKVGCMVCYGTTRGEIPAKGEVDGSVDVDPSSCVYCGWCGF 251

Query: 112 ACPVDAIVEGPNFE 125
            CPVDAI     +E
Sbjct: 252 VCPVDAIEVIKPYE 265



 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +E C+ C LC  +CP  A+  E G +         +       C YCG C  ACPV+AI
Sbjct: 271 DDEECVGCGLCVEVCPCGALEFEKGGKAGK-----TKIVAHPETCAYCGACARACPVNAI 325

Query: 119 VEGPN 123
                
Sbjct: 326 TVVRE 330



 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 8/62 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C+ C  C  +CP  AI +                ++D  +C+ CGLC E CP  A+
Sbjct: 239 DPSSCVYCGWCGFVCPVDAIEVIK--------PYEGTLEVDDEECVGCGLCVEVCPCGAL 290

Query: 119 VE 120
             
Sbjct: 291 EF 292



 Score = 38.2 bits (87), Expect = 0.35,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 3/63 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDG---TRRTVRYDIDMIKCIYCGLCQEACPV 115
            E +C+ C +C  +CP   I +    +              ++D  +C+YC LC + CP 
Sbjct: 70  DESKCVLCGICAFVCPYDVIQLLVNGKPMTEAGLPNLPKSVEVDEEECVYCSLCADTCPQ 129

Query: 116 DAI 118
           +AI
Sbjct: 130 EAI 132


>gi|313683592|ref|YP_004061330.1| 4fe-4S ferredoxin, iron-sulfur binding protein [Sulfuricurvum
           kujiense DSM 16994]
 gi|313156452|gb|ADR35130.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Sulfuricurvum
           kujiense DSM 16994]
          Length = 333

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 32/103 (31%), Gaps = 11/103 (10%)

Query: 12  FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71
            + + +    + L  F +A      P         F+    LR   NG   C +C  C  
Sbjct: 208 LIADLLFGLMIALALFVRAPFCRICPI--LPMQTLFKKIGLLRLVKNGSSSCESCGNCVK 265

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            CP     I+               +I    C  CG C E CP
Sbjct: 266 ACPMDIYEIQESAENK---------NITHADCTLCGRCIEFCP 299


>gi|297587645|ref|ZP_06946289.1| pyruvate:ferredoxin oxidoreductase [Finegoldia magna ATCC 53516]
 gi|297574334|gb|EFH93054.1| pyruvate:ferredoxin oxidoreductase [Finegoldia magna ATCC 53516]
          Length = 1224

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 42/139 (30%), Gaps = 27/139 (19%)

Query: 28  FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA------------ 75
           FK +    +P     TS   +   AL       ++CI C  C  +CP             
Sbjct: 657 FKDRANGEFP---MGTSAYEKRCIALNVPEWQMDKCIQCNQCAYVCPHAVIRPFLLNEED 713

Query: 76  --QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLCQEACP--VDAIVEGPNFEFATE 129
              A       +        + + I      C  CG C + CP    A++  P  E    
Sbjct: 714 RKNAPETFESKKAVGKGFEDLTFRIQVSPADCTGCGNCADVCPAKEKALIMKPFEEQHLA 773

Query: 130 TRQELYY------DKERLL 142
            +    Y       KE L+
Sbjct: 774 QKDNWTYAVEKVGYKEDLM 792


>gi|298528244|ref|ZP_07015648.1| NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511896|gb|EFI35798.1| NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 682

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/127 (22%), Positives = 42/127 (33%), Gaps = 29/127 (22%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINY----PFEKGSTSPRFRGEHALRRYPNGEERCIACKL 68
           L+++   F L    F + K T       PF K                      CI C  
Sbjct: 112 LQDYAYEFGLRESSFSRKKFTYPVDEGNPFVKR-----------------DPAYCILCGR 154

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDI--DMIKCIYCGLCQEACPVDAIVE------ 120
           C  +C  Q   +         ++     D+      C +CG C + CPV A+ E      
Sbjct: 155 CVRVCKEQGTNVLDFMGRGIESKVITANDMPLHESGCTFCGSCIDVCPVSALREADREQK 214

Query: 121 GPNFEFA 127
           G  +EF+
Sbjct: 215 GREWEFS 221


>gi|169830611|ref|YP_001716593.1| hydrogenase large subunit [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637455|gb|ACA58961.1| hydrogenase large subunit domain protein [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 485

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 6/71 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110
               + C+ C +C   CP  AI   S P         ++ D      ID+ KC+ CG+C 
Sbjct: 125 YIDNDSCVECGICAKNCPYYAIVEISRPCERSCDMGAIKVDECRRAVIDLDKCVSCGMCV 184

Query: 111 EACPVDAIVEG 121
             CP  AI + 
Sbjct: 185 AVCPFGAITDT 195


>gi|329578082|gb|EGG59495.1| pyruvate synthase [Enterococcus faecalis TX1467]
          Length = 1177

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96
            AL       ++C  C  C  +CP  AI       E       G              R 
Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130
            + +  C  CGLC +ACPV   AI+  P +E   E 
Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773


>gi|327535793|gb|AEA94627.1| pyruvate:ferredoxin oxidoreductase [Enterococcus faecalis OG1RF]
          Length = 1177

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96
            AL       ++C  C  C  +CP  AI       E       G              R 
Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130
            + +  C  CGLC +ACPV   AI+  P +E   E 
Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773


>gi|323481499|gb|ADX80938.1| pyruvate:ferredoxin oxidoreductase [Enterococcus faecalis 62]
          Length = 1177

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96
            AL       ++C  C  C  +CP  AI       E       G              R 
Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130
            + +  C  CGLC +ACPV   AI+  P +E   E 
Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773


>gi|315574716|gb|EFU86907.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX0309B]
 gi|315580972|gb|EFU93163.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX0309A]
          Length = 1177

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96
            AL       ++C  C  C  +CP  AI       E       G              R 
Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130
            + +  C  CGLC +ACPV   AI+  P +E   E 
Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773


>gi|315172494|gb|EFU16511.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX1346]
          Length = 1177

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96
            AL       ++C  C  C  +CP  AI       E       G              R 
Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130
            + +  C  CGLC +ACPV   AI+  P +E   E 
Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773


>gi|315170187|gb|EFU14204.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX1342]
          Length = 1177

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96
            AL       ++C  C  C  +CP  AI       E       G              R 
Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130
            + +  C  CGLC +ACPV   AI+  P +E   E 
Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773


>gi|315168553|gb|EFU12570.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX1341]
          Length = 1177

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96
            AL       ++C  C  C  +CP  AI       E       G              R 
Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130
            + +  C  CGLC +ACPV   AI+  P +E   E 
Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773


>gi|315150055|gb|EFT94071.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX0012]
          Length = 1177

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96
            AL       ++C  C  C  +CP  AI       E       G              R 
Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130
            + +  C  CGLC +ACPV   AI+  P +E   E 
Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773


>gi|315148537|gb|EFT92553.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX4244]
          Length = 1177

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96
            AL       ++C  C  C  +CP  AI       E       G              R 
Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130
            + +  C  CGLC +ACPV   AI+  P +E   E 
Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773


>gi|315032695|gb|EFT44627.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX0017]
 gi|315143710|gb|EFT87726.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX2141]
          Length = 1177

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96
            AL       ++C  C  C  +CP  AI       E       G              R 
Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130
            + +  C  CGLC +ACPV   AI+  P +E   E 
Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773


>gi|312899937|ref|ZP_07759255.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX0470]
 gi|311292933|gb|EFQ71489.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX0470]
          Length = 1177

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96
            AL       ++C  C  C  +CP  AI       E       G              R 
Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130
            + +  C  CGLC +ACPV   AI+  P +E   E 
Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773


>gi|312953593|ref|ZP_07772430.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX0102]
 gi|310628431|gb|EFQ11714.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX0102]
 gi|315151860|gb|EFT95876.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX0031]
          Length = 1177

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96
            AL       ++C  C  C  +CP  AI       E       G              R 
Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130
            + +  C  CGLC +ACPV   AI+  P +E   E 
Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773


>gi|307270724|ref|ZP_07552015.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX4248]
 gi|306513034|gb|EFM81675.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX4248]
          Length = 1177

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96
            AL       ++C  C  C  +CP  AI       E       G              R 
Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130
            + +  C  CGLC +ACPV   AI+  P +E   E 
Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773


>gi|307287613|ref|ZP_07567656.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX0109]
 gi|306501351|gb|EFM70654.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX0109]
 gi|315165010|gb|EFU09027.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX1302]
          Length = 1177

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96
            AL       ++C  C  C  +CP  AI       E       G              R 
Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130
            + +  C  CGLC +ACPV   AI+  P +E   E 
Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773


>gi|307290425|ref|ZP_07570340.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX0411]
 gi|306498618|gb|EFM68120.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX0411]
          Length = 1177

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96
            AL       ++C  C  C  +CP  AI       E       G              R 
Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130
            + +  C  CGLC +ACPV   AI+  P +E   E 
Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773


>gi|294781438|ref|ZP_06746780.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis PC1.1]
 gi|294451565|gb|EFG20025.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis PC1.1]
          Length = 1189

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96
            AL       ++C  C  C  +CP  AI       E       G              R 
Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130
            + +  C  CGLC +ACPV   AI+  P +E   E 
Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773


>gi|257416752|ref|ZP_05593746.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Enterococcus
           faecalis AR01/DG]
 gi|257158580|gb|EEU88540.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Enterococcus
           faecalis ARO1/DG]
          Length = 1177

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96
            AL       ++C  C  C  +CP  AI       E       G              R 
Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130
            + +  C  CGLC +ACPV   AI+  P +E   E 
Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773


>gi|257090704|ref|ZP_05585065.1| pyruvate decarboxylase [Enterococcus faecalis CH188]
 gi|312905245|ref|ZP_07764365.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX0635]
 gi|256999516|gb|EEU86036.1| pyruvate decarboxylase [Enterococcus faecalis CH188]
 gi|310631482|gb|EFQ14765.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX0635]
 gi|315579260|gb|EFU91451.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX0630]
          Length = 1177

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96
            AL       ++C  C  C  +CP  AI       E       G              R 
Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130
            + +  C  CGLC +ACPV   AI+  P +E   E 
Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773


>gi|257087545|ref|ZP_05581906.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis D6]
 gi|256995575|gb|EEU82877.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis D6]
 gi|315025298|gb|EFT37230.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX2137]
          Length = 1177

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96
            AL       ++C  C  C  +CP  AI       E       G              R 
Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130
            + +  C  CGLC +ACPV   AI+  P +E   E 
Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773


>gi|257084456|ref|ZP_05578817.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Enterococcus
           faecalis Fly1]
 gi|256992486|gb|EEU79788.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Enterococcus
           faecalis Fly1]
          Length = 1177

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96
            AL       ++C  C  C  +CP  AI       E       G              R 
Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130
            + +  C  CGLC +ACPV   AI+  P +E   E 
Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773


>gi|257079740|ref|ZP_05574101.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Enterococcus
           faecalis JH1]
 gi|256987770|gb|EEU75072.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Enterococcus
           faecalis JH1]
          Length = 1177

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96
            AL       ++C  C  C  +CP  AI       E       G              R 
Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130
            + +  C  CGLC +ACPV   AI+  P +E   E 
Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773


>gi|256963682|ref|ZP_05567853.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis
           HIP11704]
 gi|307271628|ref|ZP_07552899.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX0855]
 gi|256954178|gb|EEU70810.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis
           HIP11704]
 gi|306511506|gb|EFM80505.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX0855]
          Length = 1177

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96
            AL       ++C  C  C  +CP  AI       E       G              R 
Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130
            + +  C  CGLC +ACPV   AI+  P +E   E 
Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773


>gi|256961199|ref|ZP_05565370.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis
           Merz96]
 gi|293384148|ref|ZP_06630042.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis R712]
 gi|293386962|ref|ZP_06631531.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis S613]
 gi|312907901|ref|ZP_07766884.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis DAPTO 512]
 gi|312978570|ref|ZP_07790308.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis DAPTO 516]
 gi|256951695|gb|EEU68327.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis
           Merz96]
 gi|291078628|gb|EFE15992.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis R712]
 gi|291083632|gb|EFE20595.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis S613]
 gi|310625992|gb|EFQ09275.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis DAPTO 512]
 gi|311288719|gb|EFQ67275.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis DAPTO 516]
          Length = 1177

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96
            AL       ++C  C  C  +CP  AI       E       G              R 
Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130
            + +  C  CGLC +ACPV   AI+  P +E   E 
Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773


>gi|256957802|ref|ZP_05561973.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Enterococcus
           faecalis DS5]
 gi|256948298|gb|EEU64930.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Enterococcus
           faecalis DS5]
          Length = 1193

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96
            AL       ++C  C  C  +CP  AI       E       G              R 
Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130
            + +  C  CGLC +ACPV   AI+  P +E   E 
Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773


>gi|256853874|ref|ZP_05559239.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Enterococcus
           faecalis T8]
 gi|256710817|gb|EEU25860.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Enterococcus
           faecalis T8]
 gi|315030383|gb|EFT42315.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX4000]
          Length = 1177

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96
            AL       ++C  C  C  +CP  AI       E       G              R 
Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130
            + +  C  CGLC +ACPV   AI+  P +E   E 
Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773


>gi|256763201|ref|ZP_05503781.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis T3]
 gi|256684452|gb|EEU24147.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis T3]
          Length = 1177

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96
            AL       ++C  C  C  +CP  AI       E       G              R 
Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130
            + +  C  CGLC +ACPV   AI+  P +E   E 
Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773


>gi|256616925|ref|ZP_05473771.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Enterococcus
           faecalis ATCC 4200]
 gi|307276810|ref|ZP_07557921.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX2134]
 gi|256596452|gb|EEU15628.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Enterococcus
           faecalis ATCC 4200]
 gi|306506447|gb|EFM75606.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX2134]
          Length = 1177

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96
            AL       ++C  C  C  +CP  AI       E       G              R 
Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130
            + +  C  CGLC +ACPV   AI+  P +E   E 
Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773


>gi|255975082|ref|ZP_05425668.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis T2]
 gi|307285593|ref|ZP_07565732.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX0860]
 gi|255967954|gb|EET98576.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis T2]
 gi|306502817|gb|EFM72082.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX0860]
          Length = 1177

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96
            AL       ++C  C  C  +CP  AI       E       G              R 
Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130
            + +  C  CGLC +ACPV   AI+  P +E   E 
Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773


>gi|300860602|ref|ZP_07106689.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TUSoD Ef11]
 gi|300849641|gb|EFK77391.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TUSoD Ef11]
 gi|315035847|gb|EFT47779.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX0027]
 gi|315159259|gb|EFU03276.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX0312]
          Length = 1177

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96
            AL       ++C  C  C  +CP  AI       E       G              R 
Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130
            + +  C  CGLC +ACPV   AI+  P +E   E 
Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773


>gi|229545072|ref|ZP_04433797.1| pyruvate synthase [Enterococcus faecalis TX1322]
 gi|229309964|gb|EEN75951.1| pyruvate synthase [Enterococcus faecalis TX1322]
          Length = 1184

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96
            AL       ++C  C  C  +CP  AI       E       G              R 
Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130
            + +  C  CGLC +ACPV   AI+  P +E   E 
Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773


>gi|227554056|ref|ZP_03984103.1| pyruvate synthase [Enterococcus faecalis HH22]
 gi|257419969|ref|ZP_05596963.1| pyruvate decarboxylase [Enterococcus faecalis T11]
 gi|227176804|gb|EEI57776.1| pyruvate synthase [Enterococcus faecalis HH22]
 gi|257161797|gb|EEU91757.1| pyruvate decarboxylase [Enterococcus faecalis T11]
          Length = 1177

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96
            AL       ++C  C  C  +CP  AI       E       G              R 
Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130
            + +  C  CGLC +ACPV   AI+  P +E   E 
Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773


>gi|29377046|ref|NP_816200.1| pyruvate flavodoxin/ferredoxin oxidoreductase family protein
           [Enterococcus faecalis V583]
 gi|29344512|gb|AAO82270.1| pyruvate flavodoxin/ferredoxin oxidoreductase family protein
           [Enterococcus faecalis V583]
          Length = 1177

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96
            AL       ++C  C  C  +CP  AI       E       G              R 
Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130
            + +  C  CGLC +ACPV   AI+  P +E   E 
Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773


>gi|298387444|ref|ZP_06996996.1| Fe-hydrogenase large subunit family protein [Bacteroides sp.
           1_1_14]
 gi|298259651|gb|EFI02523.1| Fe-hydrogenase large subunit family protein [Bacteroides sp.
           1_1_14]
          Length = 489

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 6/68 (8%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQEA 112
             + C++C +C   CP  AI     P       +           ID  KCIYCG C  A
Sbjct: 148 DHDTCVSCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGVEHIDESKCIYCGKCMNA 207

Query: 113 CPVDAIVE 120
           CP  AI E
Sbjct: 208 CPFGAIFE 215



 Score = 38.9 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 12/97 (12%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------------ITIESGPR 85
            E    S   R              C+  + C +                      + P+
Sbjct: 75  DEVTPLSEYARMALNRPEPSKENIMCVIDEACSSCVQINYEITNLCRGCVARSCYMNCPK 134

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                ++  +  ID   C+ CG+C ++CP  AIV  P
Sbjct: 135 DAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAIVYIP 171


>gi|257421852|ref|ZP_05598842.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Enterococcus
           faecalis X98]
 gi|257163676|gb|EEU93636.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Enterococcus
           faecalis X98]
 gi|315155444|gb|EFT99460.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX0043]
          Length = 862

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96
            AL       ++C  C  C  +CP  AI       E       G              R 
Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130
            + +  C  CGLC +ACPV   AI+  P +E   E 
Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773


>gi|253571979|ref|ZP_04849384.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
 gi|251838576|gb|EES66662.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
          Length = 489

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 6/68 (8%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQEA 112
             + C++C +C   CP  AI     P       +           ID  KCIYCG C  A
Sbjct: 148 DHDTCVSCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGVEHIDESKCIYCGKCMNA 207

Query: 113 CPVDAIVE 120
           CP  AI E
Sbjct: 208 CPFGAIFE 215



 Score = 38.9 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 12/97 (12%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------------ITIESGPR 85
            E    S   R              C+  + C +                      + P+
Sbjct: 75  DEVTPLSEYARMALNRPEPSKENIMCVIDEACSSCVQINYEITNLCRGCVARSCYMNCPK 134

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                ++  +  ID   C+ CG+C ++CP  AIV  P
Sbjct: 135 DAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAIVYIP 171


>gi|74318495|ref|YP_316235.1| putative glutamate synthase (NADPH) small subunit [Thiobacillus
           denitrificans ATCC 25259]
 gi|74057990|gb|AAZ98430.1| iron-sulfur cluster-binding protein, GltD family [Thiobacillus
           denitrificans ATCC 25259]
          Length = 653

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 23/60 (38%), Gaps = 3/60 (5%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           +C  C  C   CP  A+            R     D D  KCI C +C + CP   IV G
Sbjct: 594 QCFECDNCVVYCPQTAVFKVKKKDNPTVGRY---VDTDYGKCIGCHICADVCPTGYIVMG 650


>gi|332981009|ref|YP_004462450.1| dihydroorotate oxidase [Mahella australiensis 50-1 BON]
 gi|332698687|gb|AEE95628.1| dihydroorotate oxidase [Mahella australiensis 50-1 BON]
          Length = 385

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 11/60 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ++C +C +C  +C   AI   + P           Y I    C  CGLC E CP+ A+  
Sbjct: 334 DKCTSCGICAPLCIFDAIDSSTEP-----------YRIVQDICDGCGLCAEVCPISAVEM 382


>gi|23014811|ref|ZP_00054610.1| COG0493: NADPH-dependent glutamate synthase beta chain and related
           oxidoreductases [Magnetospirillum magnetotacticum MS-1]
          Length = 651

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 21/59 (35%), Gaps = 4/59 (6%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           C  C  C   CP  A+          G      Y     KCI C +C++ CP   I  G
Sbjct: 594 CFECDNCVVFCPQHAVDRVKKSERTTGRYVETDY----SKCIGCHICKDVCPTGYIQMG 648


>gi|332299925|ref|YP_004441846.1| Ferredoxin hydrogenase [Porphyromonas asaccharolytica DSM 20707]
 gi|332176988|gb|AEE12678.1| Ferredoxin hydrogenase [Porphyromonas asaccharolytica DSM 20707]
          Length = 499

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110
               E CI+C  C   CP  AI     P         +  D      ID  KCIYCG C 
Sbjct: 147 QIDHEICISCGQCHKNCPYHAIVYIPVPCEESCPVGAISKDEDGIEHIDESKCIYCGSCL 206

Query: 111 EACPVDAIVE 120
            ACP  AI E
Sbjct: 207 NACPFGAIFE 216



 Score = 37.8 bits (86), Expect = 0.50,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 27/97 (27%), Gaps = 12/97 (12%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ------AITIESGPRCHDGTR 91
            E    S          +       C+  + C +                S     +  +
Sbjct: 76  DELTPLSEYAHTALHRPQPTKENVLCVIDEACTSCVQINYEVSNLCRGCVSRACSSNCPK 135

Query: 92  RTVRY------DIDMIKCIYCGLCQEACPVDAIVEGP 122
             + +       ID   CI CG C + CP  AIV  P
Sbjct: 136 SCISFKKNGQAQIDHEICISCGQCHKNCPYHAIVYIP 172


>gi|312878988|ref|ZP_07738788.1| NAD-dependent formate dehydrogenase catalytic subunit [Aminomonas
           paucivorans DSM 12260]
 gi|310782279|gb|EFQ22677.1| NAD-dependent formate dehydrogenase catalytic subunit [Aminomonas
           paucivorans DSM 12260]
          Length = 902

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 4/90 (4%)

Query: 35  NYPF-EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGT 90
             PF E+G T  ++  E A   Y     +CI C  C   C + A                
Sbjct: 122 KSPFAEEGDTCTKYALEDANPFYVRDMNKCILCGRCIRACDSLAQYHAIDFQNRGIKTMV 181

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           +  V  D++   C +CG C + CPV A+ E
Sbjct: 182 QPPVGVDLEHSDCTFCGQCVQVCPVGALSE 211


>gi|219853283|ref|YP_002467715.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanosphaerula palustris E1-9c]
 gi|219547542|gb|ACL17992.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanosphaerula palustris E1-9c]
          Length = 125

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 14/98 (14%)

Query: 27  FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC 86
             K   T+NYP      S   RG   +       + C  C LC   CP QAI+++     
Sbjct: 14  LLKKPATLNYPARPAKKSDLSRGHLTI-----DVDSCKWCGLCSRRCPTQAISVD----- 63

Query: 87  HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
               R+   ++ID  +C+ C  C E CP   +     +
Sbjct: 64  ----RKGKTWEIDRFRCVVCNSCVEICPAHCLTMENTY 97


>gi|29347244|ref|NP_810747.1| putative hydrogenase [Bacteroides thetaiotaomicron VPI-5482]
 gi|29339143|gb|AAO76941.1| putative hydrogenase [Bacteroides thetaiotaomicron VPI-5482]
          Length = 482

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 6/68 (8%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQEA 112
             + C++C +C   CP  AI     P       +           ID  KCIYCG C  A
Sbjct: 141 DHDTCVSCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGVEHIDESKCIYCGKCMNA 200

Query: 113 CPVDAIVE 120
           CP  AI E
Sbjct: 201 CPFGAIFE 208



 Score = 38.9 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 12/97 (12%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------------ITIESGPR 85
            E    S   R              C+  + C +                      + P+
Sbjct: 68  DEVTPLSEYARMALNRPEPSKENIMCVIDEACSSCVQINYEITNLCRGCVARSCYMNCPK 127

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                ++  +  ID   C+ CG+C ++CP  AIV  P
Sbjct: 128 DAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAIVYIP 164


>gi|295111792|emb|CBL28542.1| Uncharacterized Fe-S center protein [Synergistetes bacterium SGP1]
          Length = 370

 Score = 54.7 bits (130), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 12/73 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              +E+CI C  C  IC   A  +  G              ID  +C+ CG C  ACPVD
Sbjct: 192 HVEQEKCICCGRCVRICAHDAPHVTPGRGA----------TIDHDRCVGCGRCIGACPVD 241

Query: 117 AIVEGPNFEFATE 129
           A+   P+++ A +
Sbjct: 242 AVA--PDYDEAFD 252


>gi|313886419|ref|ZP_07820139.1| 4Fe-4S binding domain protein [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|312924135|gb|EFR34924.1| 4Fe-4S binding domain protein [Porphyromonas asaccharolytica
           PR426713P-I]
          Length = 492

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110
               E CI+C  C   CP  AI     P         +  D      ID  KCIYCG C 
Sbjct: 140 QIDHEICISCGQCHKNCPYHAIVYIPVPCEESCPVGAISKDEDGIEHIDESKCIYCGSCL 199

Query: 111 EACPVDAIVE 120
            ACP  AI E
Sbjct: 200 NACPFGAIFE 209



 Score = 37.8 bits (86), Expect = 0.52,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 27/97 (27%), Gaps = 12/97 (12%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ------AITIESGPRCHDGTR 91
            E    S          +       C+  + C +                S     +  +
Sbjct: 69  DELTPLSEYAHTALHRPQPTKENVLCVIDEACTSCVQINYEVSNLCRGCVSRACSSNCPK 128

Query: 92  RTVRY------DIDMIKCIYCGLCQEACPVDAIVEGP 122
             + +       ID   CI CG C + CP  AIV  P
Sbjct: 129 SCISFKKNGQAQIDHEICISCGQCHKNCPYHAIVYIP 165


>gi|218782454|ref|YP_002433772.1| hypothetical protein Dalk_4626 [Desulfatibacillum alkenivorans
           AK-01]
 gi|218763838|gb|ACL06304.1| protein of unknown function DUF362 [Desulfatibacillum alkenivorans
           AK-01]
          Length = 387

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/101 (31%), Positives = 40/101 (39%), Gaps = 19/101 (18%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80
              L    +   T          S RFR     R  P G+E+C  C  C  ICPA AI+ 
Sbjct: 296 GTILSNMVRWPIT----------SKRFRNLFIDRPVP-GQEKCTLCYQCMKICPAGAIS- 343

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
               +   G ++      D  KCI C  C E CP  AI +G
Sbjct: 344 ----KAGSGGKKPT---YDYNKCIRCYCCMEVCPEAAIEKG 377


>gi|51894398|ref|YP_077089.1| pyruvate ferredoxin oxidoreductase gamma-delta subunit
           [Symbiobacterium thermophilum IAM 14863]
 gi|51858087|dbj|BAD42245.1| pyruvate ferredoxin oxidoreductase gamma-delta subunit
           [Symbiobacterium thermophilum IAM 14863]
          Length = 343

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 4/81 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E+CI C  C+ +CP      E G     G    V   I+   C  C  C EACPVDA+
Sbjct: 260 DREKCIDCAQCDMVCPDYCFVWEQG-VDKRGRPAMVLKGINYQYCKGCLKCVEACPVDAL 318

Query: 119 VEGPN---FEFATETRQELYY 136
            E      +  A   R +   
Sbjct: 319 REMREQDGYADAHTVRHDHLL 339


>gi|307298219|ref|ZP_07578023.1| BFD domain protein (2Fe-2S)-binding domain protein [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306916305|gb|EFN46688.1| BFD domain protein (2Fe-2S)-binding domain protein [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 605

 Score = 54.7 bits (130), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/121 (25%), Positives = 38/121 (31%), Gaps = 21/121 (17%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE----------R 62
           ++E +      LR F    T+            +F          N              
Sbjct: 325 IQERLKYLKDTLRKFRSGPTSSKTRAGLSKLGSKFEEVSFTNGNQNDFTKYTGKMRPLIE 384

Query: 63  C---IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           C   I C  CE  CPA AI+I        G     R  ID  KC  CG+C   CP  AI 
Sbjct: 385 CFEAIPCNPCETSCPAGAISI--------GDNINSRPIIDYSKCTGCGICATTCPGLAIF 436

Query: 120 E 120
            
Sbjct: 437 M 437


>gi|325970707|ref|YP_004246898.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Spirochaeta sp. Buddy]
 gi|324025945|gb|ADY12704.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Spirochaeta sp. Buddy]
          Length = 369

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 24/65 (36%), Gaps = 11/65 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +  CI C  C  IC   A  I  G              ID  KC+ CG C   CP DAI
Sbjct: 193 DQSLCIGCGNCVDICAHDAPMITEGLS-----------WIDQNKCVGCGRCIGVCPTDAI 241

Query: 119 VEGPN 123
               N
Sbjct: 242 SNNDN 246


>gi|302347898|ref|YP_003815536.1| Pyruvate:ferredoxin oxidoreductase (POR) and putative
           2-oxoglutarate:ferredoxin oxidoreductase (KGOR), delta
           subunit [Acidilobus saccharovorans 345-15]
 gi|302328310|gb|ADL18505.1| Pyruvate:ferredoxin oxidoreductase (POR) and putative
           2-oxoglutarate:ferredoxin oxidoreductase (KGOR), delta
           subunit [Acidilobus saccharovorans 345-15]
          Length = 112

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 1/75 (1%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR-YDIDMIKCIYCG 107
           G+  +      +++CI C++C  +CP  AI     P      R     YD+D   C  CG
Sbjct: 34  GDWKVLMPVIDQDKCIRCRICWYVCPDNAIKELDKPHTTKAKRVYKISYDVDYDYCKGCG 93

Query: 108 LCQEACPVDAIVEGP 122
           +C + CPV AI   P
Sbjct: 94  MCAQECPVKAIDMVP 108


>gi|289522156|ref|ZP_06439010.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289503992|gb|EFD25156.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 573

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 15/97 (15%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
             +RY F+ +   +   ++           AL +Y    ++C  C LC   CP + I+ +
Sbjct: 489 TTIRY-FRDEYLAHIEEKRCPAKVC----PALIKYVVDPDKCRKCGLCARNCPVKCISGD 543

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                     R   Y ID  KCI CG C + CP   I
Sbjct: 544 ----------RQTPYFIDQEKCIKCGTCMQVCPFGVI 570


>gi|225175529|ref|ZP_03729523.1| nitrite and sulphite reductase 4Fe-4S region [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168858|gb|EEG77658.1| nitrite and sulphite reductase 4Fe-4S region [Dethiobacter
           alkaliphilus AHT 1]
          Length = 285

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 34/86 (39%), Gaps = 11/86 (12%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P           G   + +    +  CI+C LC   CP+ AIT+E G            
Sbjct: 138 CPRSCAKPQENDFGFIGVIKPKFKQNDCISCGLCADTCPSGAITMEDGYPA--------- 188

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEG 121
             ID  KCI+CG C   CP +A   G
Sbjct: 189 --IDREKCIHCGECVAVCPTEAWQVG 212



 Score = 38.5 bits (88), Expect = 0.32,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 1/50 (2%)

Query: 76  QAITIESGPRC-HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
                 + P+    G    ++       CI CGLC + CP  AI     +
Sbjct: 137 GCPRSCAKPQENDFGFIGVIKPKFKQNDCISCGLCADTCPSGAITMEDGY 186


>gi|221194389|ref|ZP_03567446.1| hydrogenase large subunit domain protein [Atopobium rimae ATCC
           49626]
 gi|221185293|gb|EEE17683.1| hydrogenase large subunit domain protein [Atopobium rimae ATCC
           49626]
          Length = 532

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQ 110
              +E+CI C +CE +CP  AI     P                R DID  KC+ CG C 
Sbjct: 154 FIDQEKCIKCGMCEKVCPYHAILHHLRPCAEACGMHAIGSDEHGRADIDYEKCVSCGQCL 213

Query: 111 EACPVDAI 118
             CP  AI
Sbjct: 214 VNCPFGAI 221



 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 23/86 (26%), Gaps = 5/86 (5%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P                      +        C+         I          ++   
Sbjct: 98  IPEVYYQPPLI--NIIKFACNACEDNVFRVSNACQGCLAHPCREICPKGAISFVDKKAF- 154

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEG 121
             ID  KCI CG+C++ CP  AI+  
Sbjct: 155 --IDQEKCIKCGMCEKVCPYHAILHH 178


>gi|237744805|ref|ZP_04575286.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. 7_1]
 gi|229432034|gb|EEO42246.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. 7_1]
          Length = 1188

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 40/112 (35%), Gaps = 18/112 (16%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA--------------ITIESG 83
           FE G+ +   RG        N  ++CI C  C  +CP  A                  + 
Sbjct: 675 FENGTAAFEKRGVAVDVPIWN-VDKCIQCNQCSYVCPHAAIRPFLINEKELKAAPMPFAT 733

Query: 84  PRCHDGTRRTVRYDIDMI--KCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
            +        + Y I +    C+ CG C   CP +A+   P  E + E  ++
Sbjct: 734 KKAAGKGLDGLVYRIQVSALDCVGCGSCANVCPANALDMRPIAE-SLEAHED 784


>gi|255658407|ref|ZP_05403816.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Mitsuokella
           multacida DSM 20544]
 gi|260849741|gb|EEX69748.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Mitsuokella
           multacida DSM 20544]
          Length = 1174

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 26/85 (30%), Gaps = 14/85 (16%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQ--------------AITIESGPRCHDGTRRTVRYD 97
           A+       ++CI C  C  +CP                A                    
Sbjct: 680 AINVPVWNTQKCIGCNKCSYVCPHASIRPVLTTDEELAAAPEGFPSKDVRAVKDYHFTVA 739

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           +  + C+ CG C + CPV A+   P
Sbjct: 740 VSTMDCLGCGNCAQVCPVKALDMTP 764


>gi|220929646|ref|YP_002506555.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium cellulolyticum H10]
 gi|219999974|gb|ACL76575.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium cellulolyticum H10]
          Length = 597

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 10/69 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           + +Y     +C +C +C   CP   I  E          + V Y ID  KC  CG+C E 
Sbjct: 539 MMKYTVDASKCKSCGICAKACPMGCIKGE----------KKVPYVIDNSKCAKCGVCIEK 588

Query: 113 CPVDAIVEG 121
           CP  AI +G
Sbjct: 589 CPFKAISKG 597



 Score = 38.2 bits (87), Expect = 0.43,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +          +  ++Y +D  KC  CG+C +ACP+  I
Sbjct: 525 HVFDKKCPAGVCKSMMKYTVDASKCKSCGICAKACPMGCI 564


>gi|94972213|ref|YP_594253.1| formate dehydrogenase, alpha subunit [Deinococcus geothermalis DSM
           11300]
 gi|94554264|gb|ABF44179.1| formate dehydrogenase, alpha subunit [Deinococcus geothermalis DSM
           11300]
          Length = 1004

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 3/83 (3%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---YD 97
                 +  +     Y    ++CI C  C   C    +         D   R +      
Sbjct: 127 PYQPKPYPKDETNPFYRYDPDQCILCGRCVEACQNLQVNETLTINWEDPHPRVLWDGGRP 186

Query: 98  IDMIKCIYCGLCQEACPVDAIVE 120
           I+   C+ CG C   CP +A++E
Sbjct: 187 INESSCVSCGHCVSVCPCNALME 209


>gi|228470307|ref|ZP_04055211.1| Fe-hydrogenase large subunit family protein [Porphyromonas uenonis
           60-3]
 gi|228308050|gb|EEK16925.1| Fe-hydrogenase large subunit family protein [Porphyromonas uenonis
           60-3]
          Length = 492

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110
               + CI+C  C   CP  AI     P         +  D      ID  KCIYCG C 
Sbjct: 140 QIDHDVCISCGQCHKNCPYHAIVYIPVPCEESCPVGAISKDEDGIEHIDESKCIYCGSCL 199

Query: 111 EACPVDAIVE 120
            ACP  AI E
Sbjct: 200 NACPFGAIFE 209



 Score = 37.4 bits (85), Expect = 0.76,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 6/72 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110
              +E C +C               S     +  +  + +       ID   CI CG C 
Sbjct: 94  CVIDEACTSCVQINYEVSNLCRGCVSRACSSNCPKSCISFQKNGQAQIDHDVCISCGQCH 153

Query: 111 EACPVDAIVEGP 122
           + CP  AIV  P
Sbjct: 154 KNCPYHAIVYIP 165


>gi|15679732|ref|NP_276850.1| pyruvate ferredoxin oxidoreductase subunit gamma/delta
           [Methanothermobacter thermautotrophicus str. Delta H]
 gi|2622871|gb|AAB86210.1| pyruvate oxidoreductase, gamma subunit [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 261

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 14/65 (21%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +++CI C  C   CP   I  E              ++ID   C  CG+C E CPV AI
Sbjct: 210 DKDKCIDCDNCILFCPEGCINRE--------------HEIDYDYCKGCGICAEKCPVKAI 255

Query: 119 VEGPN 123
                
Sbjct: 256 KMERE 260



 Score = 37.0 bits (84), Expect = 0.93,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 18/42 (42%)

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
           +   G+ RT +  +D  KCI C  C   CP   I      ++
Sbjct: 196 KNKTGSWRTFKPVLDKDKCIDCDNCILFCPEGCINREHEIDY 237


>gi|326405999|gb|ADZ63070.1| pyruvate dehydrogenase [Lactococcus lactis subsp. lactis CV56]
          Length = 1193

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 34/104 (32%), Gaps = 17/104 (16%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
            E   TS   +   AL       + CI C  C  +CP  AI                 + 
Sbjct: 668 DEPLGTSASEKRVIALEIPEWNAQACIQCNECSFVCPHAAIRPFLVDEDEWNQAPEGFHV 727

Query: 98  IDM--------------IKCIYCGLCQEACPV--DAIVEGPNFE 125
           +D                 C  CGLC EACP   +A+   P +E
Sbjct: 728 MDYKGADGLKYRIQVSVEDCTGCGLCVEACPKKGEALKMIP-YE 770


>gi|68304950|gb|AAY89961.1| predicted DsrL [uncultured bacterium BAC13K9BAC]
          Length = 657

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 21/60 (35%), Gaps = 4/60 (6%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C  C  C   CP  A+          G      Y+    KCI C +C + CP   I  G
Sbjct: 599 MCFECDNCVIYCPQDAVFRVKKDEATLGRYVDTDYN----KCIGCHICADVCPTGYIKMG 654


>gi|15672404|ref|NP_266578.1| pyruvate-flavodoxin oxidoreductase [Lactococcus lactis subsp.
           lactis Il1403]
 gi|12723298|gb|AAK04520.1|AE006279_2 pyruvate-flavodoxin oxidoreductase [Lactococcus lactis subsp.
           lactis Il1403]
          Length = 1190

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 34/104 (32%), Gaps = 17/104 (16%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
            E   TS   +   AL       + CI C  C  +CP  AI                 + 
Sbjct: 665 DEPLGTSASEKRVIALEIPEWNAQACIQCNECSFVCPHAAIRPFLVDEDEWNQAPEGFHV 724

Query: 98  IDM--------------IKCIYCGLCQEACPV--DAIVEGPNFE 125
           +D                 C  CGLC EACP   +A+   P +E
Sbjct: 725 MDYKGADGLKYRIQVSVEDCTGCGLCVEACPKKGEALKMIP-YE 767


>gi|315161806|gb|EFU05823.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX0645]
          Length = 1177

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 33/96 (34%), Gaps = 17/96 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96
            AL       ++C  C  C  +CP  AI       E       G              R 
Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPVGFAMREMRGTDGLMYRI 738

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130
              +  C  CGLC +ACPV   AI+  P +E   E 
Sbjct: 739 QFSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773


>gi|260173332|ref|ZP_05759744.1| putative hydrogenase [Bacteroides sp. D2]
 gi|315921605|ref|ZP_07917845.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313695480|gb|EFS32315.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 489

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 6/68 (8%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQEA 112
             + C++C +C   CP  AI     P       +           ID  KCIYCG C  A
Sbjct: 148 DHDTCVSCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDESKCIYCGKCMNA 207

Query: 113 CPVDAIVE 120
           CP  AI E
Sbjct: 208 CPFGAIFE 215



 Score = 38.5 bits (88), Expect = 0.28,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 12/97 (12%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------------ITIESGPR 85
            E    S   R   +          C+  + C +                      + P+
Sbjct: 75  DEVTPLSEYARLALSRPEPDKENIMCVIDEACSSCVQINYEITNLCRGCVARSCYMNCPK 134

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                ++  +  ID   C+ CG+C ++CP  AIV  P
Sbjct: 135 DAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAIVYIP 171


>gi|256026538|ref|ZP_05440372.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. D11]
 gi|289764548|ref|ZP_06523926.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. D11]
 gi|289716103|gb|EFD80115.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. D11]
          Length = 1188

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 40/112 (35%), Gaps = 18/112 (16%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA--------------ITIESG 83
           FE G+ +   RG        N  ++CI C  C  +CP  A                  + 
Sbjct: 675 FENGTAAFEKRGVAVDVPIWN-VDKCIQCNQCSYVCPHAAIRPFLINEKELKAAPMPFAT 733

Query: 84  PRCHDGTRRTVRYDIDMI--KCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
            +        + Y I +    C+ CG C   CP +A+   P  E + E  ++
Sbjct: 734 KKAAGKGLDGLVYRIQVSALDCVGCGSCANVCPANALDMRPIAE-SLEAHED 784


>gi|326778460|ref|ZP_08237725.1| Ferredoxin--NADP(+) reductase [Streptomyces cf. griseus XylebKG-1]
 gi|326658793|gb|EGE43639.1| Ferredoxin--NADP(+) reductase [Streptomyces cf. griseus XylebKG-1]
          Length = 554

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 29/72 (40%), Gaps = 5/72 (6%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C     C A+CP   I      R       T    ID   CI CG C +ACPVDAI  
Sbjct: 7   QTCCNDATCVAVCPVNCIHPTPEERA---FGSTEMLHIDPRACIDCGACADACPVDAIF- 62

Query: 121 GPNFEFATETRQ 132
            P    +   R+
Sbjct: 63  -PVDALSAGQRE 73


>gi|182437825|ref|YP_001825544.1| putative ferredoxin reductase [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|178466341|dbj|BAG20861.1| putative ferredoxin reductase [Streptomyces griseus subsp. griseus
           NBRC 13350]
          Length = 554

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 29/72 (40%), Gaps = 5/72 (6%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C     C A+CP   I      R       T    ID   CI CG C +ACPVDAI  
Sbjct: 7   QTCCNDATCVAVCPVNCIHPTPEERA---FGSTEMLHIDPRACIDCGACADACPVDAIF- 62

Query: 121 GPNFEFATETRQ 132
            P    +   R+
Sbjct: 63  -PVDALSAGQRE 73


>gi|293373213|ref|ZP_06619575.1| iron only hydrogenase large subunit, C-terminal domain protein
           [Bacteroides ovatus SD CMC 3f]
 gi|292631861|gb|EFF50477.1| iron only hydrogenase large subunit, C-terminal domain protein
           [Bacteroides ovatus SD CMC 3f]
          Length = 489

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 6/68 (8%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQEA 112
             + C++C +C   CP  AI     P       +           ID  KCIYCG C  A
Sbjct: 148 DHDTCVSCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDESKCIYCGKCMNA 207

Query: 113 CPVDAIVE 120
           CP  AI E
Sbjct: 208 CPFGAIFE 215



 Score = 38.5 bits (88), Expect = 0.28,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 12/97 (12%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------------ITIESGPR 85
            E    S   R   +          C+  + C +                      + P+
Sbjct: 75  DEVTPLSEYARLALSRPEPDKENIMCVIDEACSSCVQINYEITNLCRGCVARSCYMNCPK 134

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                ++  +  ID   C+ CG+C ++CP  AIV  P
Sbjct: 135 DAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAIVYIP 171


>gi|281490964|ref|YP_003352944.1| pyruvate dehydrogenase [Lactococcus lactis subsp. lactis KF147]
 gi|281374722|gb|ADA64242.1| Pyruvate dehydrogenase (ferredoxin/flavodoxin-dependent)
           [Lactococcus lactis subsp. lactis KF147]
          Length = 1223

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 34/104 (32%), Gaps = 17/104 (16%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
            E   TS   +   AL       + CI C  C  +CP  AI                 + 
Sbjct: 665 DEPLGTSASEKRGIALEIPEWNAQACIQCNECSFVCPHAAIRPFLVDEDEWNQAPEGFHV 724

Query: 98  IDM--------------IKCIYCGLCQEACPV--DAIVEGPNFE 125
           +D                 C  CGLC EACP   +A+   P +E
Sbjct: 725 MDYKGADGLKYRIQVSVEDCTGCGLCVEACPKKGEALKMIP-YE 767


>gi|218961476|ref|YP_001741251.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional
           hydrogenase), subunit beta; putative signal peptide
           [Candidatus Cloacamonas acidaminovorans]
 gi|167730133|emb|CAO81045.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional
           hydrogenase), subunit beta; putative signal peptide
           [Candidatus Cloacamonas acidaminovorans]
          Length = 619

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 10/70 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L  +   +++CI C LC   CP   I+     +          Y I+ + CI CG C + 
Sbjct: 538 LMHFEIDKDKCIGCSLCARKCPVSCISGSREEK----------YTINQLSCIKCGTCMDV 587

Query: 113 CPVDAIVEGP 122
           CPV AI + P
Sbjct: 588 CPVKAISKIP 597



 Score = 39.3 bits (90), Expect = 0.16,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           + ++ID  KCI C LC   CPV  I     
Sbjct: 539 MHFEIDKDKCIGCSLCARKCPVSCISGSRE 568


>gi|308161867|gb|EFO64299.1| Fe-hydrogenase-1 [Giardia lamblia P15]
          Length = 495

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 26/86 (30%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
                    G  A         +CI C +C   C  Q I +                 + 
Sbjct: 23  PPKPQHDVTGVDANNAIMIDYAKCIGCNMCIKACDVQGIGVYKQNEKPKYPPIVKLSTLF 82

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFE 125
              CI CG C   CPVDAI    N E
Sbjct: 83  NSDCIGCGQCATICPVDAIAPKNNLE 108



 Score = 34.3 bits (77), Expect = 6.2,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 14/33 (42%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
            ID  KCI C +C +AC V  I      E    
Sbjct: 40  MIDYAKCIGCNMCIKACDVQGIGVYKQNEKPKY 72


>gi|299149444|ref|ZP_07042501.1| Fe-hydrogenase large subunit family protein [Bacteroides sp.
           3_1_23]
 gi|298512631|gb|EFI36523.1| Fe-hydrogenase large subunit family protein [Bacteroides sp.
           3_1_23]
          Length = 489

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 6/68 (8%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQEA 112
             + C++C +C   CP  AI     P       +           ID  KCIYCG C  A
Sbjct: 148 DHDTCVSCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDESKCIYCGKCMNA 207

Query: 113 CPVDAIVE 120
           CP  AI E
Sbjct: 208 CPFGAIFE 215



 Score = 38.5 bits (88), Expect = 0.28,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 12/97 (12%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------------ITIESGPR 85
            E    S   R   +          C+  + C +                      + P+
Sbjct: 75  DEVTPLSEYARLALSRPEPDKENIMCVIDEACSSCVQINYEITNLCRGCVARSCYMNCPK 134

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                ++  +  ID   C+ CG+C ++CP  AIV  P
Sbjct: 135 DAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAIVYIP 171


>gi|298480728|ref|ZP_06998924.1| Fe-hydrogenase large subunit family protein [Bacteroides sp. D22]
 gi|298273162|gb|EFI14727.1| Fe-hydrogenase large subunit family protein [Bacteroides sp. D22]
          Length = 489

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 6/68 (8%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQEA 112
             + C++C +C   CP  AI     P       +           ID  KCIYCG C  A
Sbjct: 148 DHDTCVSCGICHKSCPYHAIVYIPVPCEEACPVKAISKDEHGIEHIDESKCIYCGKCMNA 207

Query: 113 CPVDAIVE 120
           CP  AI E
Sbjct: 208 CPFGAIFE 215



 Score = 37.8 bits (86), Expect = 0.47,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 8/69 (11%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           +        C  C      C          P+     ++  +  ID   C+ CG+C ++C
Sbjct: 111 QINYEITNLCRGC--VARSCYMNC------PKDAIRFKKNGQAMIDHDTCVSCGICHKSC 162

Query: 114 PVDAIVEGP 122
           P  AIV  P
Sbjct: 163 PYHAIVYIP 171


>gi|237723391|ref|ZP_04553872.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|229447913|gb|EEO53704.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
          Length = 489

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 6/68 (8%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQEA 112
             + C++C +C   CP  AI     P       +           ID  KCIYCG C  A
Sbjct: 148 DHDTCVSCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDESKCIYCGKCMNA 207

Query: 113 CPVDAIVE 120
           CP  AI E
Sbjct: 208 CPFGAIFE 215



 Score = 38.5 bits (88), Expect = 0.28,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 12/97 (12%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------------ITIESGPR 85
            E    S   R   +          C+  + C +                      + P+
Sbjct: 75  DEVTPLSEYARLALSRPEPDKENIMCVIDEACSSCVQINYEITNLCRGCVARSCYMNCPK 134

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                ++  +  ID   C+ CG+C ++CP  AIV  P
Sbjct: 135 DAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAIVYIP 171


>gi|237713804|ref|ZP_04544285.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262409289|ref|ZP_06085832.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294644700|ref|ZP_06722449.1| 4Fe-4S binding domain protein [Bacteroides ovatus SD CC 2a]
 gi|294805939|ref|ZP_06764806.1| 4Fe-4S binding domain protein [Bacteroides xylanisolvens SD CC 1b]
 gi|229446251|gb|EEO52042.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|262352741|gb|EEZ01838.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292639963|gb|EFF58232.1| 4Fe-4S binding domain protein [Bacteroides ovatus SD CC 2a]
 gi|294446821|gb|EFG15421.1| 4Fe-4S binding domain protein [Bacteroides xylanisolvens SD CC 1b]
 gi|295085089|emb|CBK66612.1| Iron only hydrogenase large subunit, C-terminal domain [Bacteroides
           xylanisolvens XB1A]
          Length = 489

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 6/68 (8%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQEA 112
             + C++C +C   CP  AI     P       +           ID  KCIYCG C  A
Sbjct: 148 DHDTCVSCGICHKSCPYHAIVYIPVPCEEACPVKAISKDEHGIEHIDESKCIYCGKCMNA 207

Query: 113 CPVDAIVE 120
           CP  AI E
Sbjct: 208 CPFGAIFE 215



 Score = 38.5 bits (88), Expect = 0.28,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 12/97 (12%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------------ITIESGPR 85
            E    S   R   +          C+  + C +                      + P+
Sbjct: 75  DEVTPLSEYARLALSRPEPDKENIMCVIDEACSSCVQINYEITNLCRGCVARSCYMNCPK 134

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                ++  +  ID   C+ CG+C ++CP  AIV  P
Sbjct: 135 DAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAIVYIP 171


>gi|167629699|ref|YP_001680198.1| ferridoxin/ hydrogenase, putative [Heliobacterium modesticaldum
           Ice1]
 gi|167592439|gb|ABZ84187.1| ferridoxin/ hydrogenase, putative [Heliobacterium modesticaldum
           Ice1]
          Length = 493

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY------DIDMIKCIYCGLCQ 110
              +++CI C  C  +CP  AIT    P       + ++Y       ID  KC+ CG C 
Sbjct: 141 YINQQKCIECGRCHQVCPYGAITDMQRPCIKACPVKAIQYGEDKIARIDPNKCVSCGHCA 200

Query: 111 EACPVDAI 118
            +CP  AI
Sbjct: 201 VSCPFGAI 208



 Score = 42.4 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 21/76 (27%), Gaps = 3/76 (3%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                    A+       +R      C      + I            R      I+  K
Sbjct: 90  IPDPLVRVIAIACDECPVDRFTVTGACRGCITHRCIEACPVDAIAQINRLA---YINQQK 146

Query: 103 CIYCGLCQEACPVDAI 118
           CI CG C + CP  AI
Sbjct: 147 CIECGRCHQVCPYGAI 162


>gi|160886568|ref|ZP_02067571.1| hypothetical protein BACOVA_04579 [Bacteroides ovatus ATCC 8483]
 gi|156108453|gb|EDO10198.1| hypothetical protein BACOVA_04579 [Bacteroides ovatus ATCC 8483]
          Length = 489

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 6/68 (8%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQEA 112
             + C++C +C   CP  AI     P       +           ID  KCIYCG C  A
Sbjct: 148 DHDTCVSCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDESKCIYCGKCMNA 207

Query: 113 CPVDAIVE 120
           CP  AI E
Sbjct: 208 CPFGAIFE 215



 Score = 38.5 bits (88), Expect = 0.28,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 12/97 (12%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------------ITIESGPR 85
            E    S   R   +          C+  + C +                      + P+
Sbjct: 75  DEVTPLSEYARLALSRPEPDKENIMCVIDEACSSCVQINYEITNLCRGCVARSCYMNCPK 134

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                ++  +  ID   C+ CG+C ++CP  AIV  P
Sbjct: 135 DAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAIVYIP 171


>gi|297568801|ref|YP_003690145.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfurivibrio
            alkaliphilus AHT2]
 gi|296924716|gb|ADH85526.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfurivibrio
            alkaliphilus AHT2]
          Length = 1019

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 6/63 (9%)

Query: 59   GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++ CI C LCE++CP QAI I              + +     C  CG+C   CPV AI
Sbjct: 946  DKDGCIGCGLCESLCPYQAIRIYKDDNNK------RKAETITASCKGCGICASHCPVFAI 999

Query: 119  VEG 121
              G
Sbjct: 1000 SMG 1002



 Score = 40.1 bits (92), Expect = 0.098,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 28/94 (29%), Gaps = 12/94 (12%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP-------RCHDGTRRTVRY 96
              F  +  +R      ++C AC +C   CP   +   +                    Y
Sbjct: 93  PGAFTAKLQVRPRYIDADKCTACGMCTQYCPRHLVDGYNEGLAVTRPIHIDYPQAVPATY 152

Query: 97  DIDMIKCIY-----CGLCQEACPVDAIVEGPNFE 125
            ID   C++     C +C   C   AI      E
Sbjct: 153 FIDPKACLHLQHGTCKICVPVCQTKAIDFDQQPE 186



 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 14/31 (45%)

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                +D   CI CGLC+  CP  AI    +
Sbjct: 940 PTVSTVDKDGCIGCGLCESLCPYQAIRIYKD 970


>gi|295113549|emb|CBL32186.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric
           [Enterococcus sp. 7L76]
          Length = 1177

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 33/96 (34%), Gaps = 17/96 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96
            AL       ++C  C  C  +CP  AI       E       G              R 
Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130
              +  C  CGLC +ACPV   AI+  P +E   E 
Sbjct: 739 QFSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773


>gi|303239624|ref|ZP_07326149.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2]
 gi|302592795|gb|EFL62518.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2]
          Length = 598

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 10/66 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           + +Y    E C +C +C   CP  AI+ E          + V Y ID  KC+ CG+C E 
Sbjct: 539 MMKYVINAETCKSCGICAKQCPVGAISGE----------KKVPYVIDQNKCVKCGVCMEK 588

Query: 113 CPVDAI 118
           CP  AI
Sbjct: 589 CPFKAI 594



 Score = 40.5 bits (93), Expect = 0.075,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 19/49 (38%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           +         +          +  ++Y I+   C  CG+C + CPV AI
Sbjct: 516 KYFKDEYMAHVIDKKCPAGVCKSMMKYVINAETCKSCGICAKQCPVGAI 564


>gi|73670190|ref|YP_306205.1| hypothetical protein Mbar_A2721 [Methanosarcina barkeri str.
           Fusaro]
 gi|72397352|gb|AAZ71625.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 369

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 26/69 (37%), Gaps = 11/69 (15%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E+CI C+ C  ICP  A  +                 ID   CI CG C E CPV AI  
Sbjct: 194 EKCIGCQKCIKICPVGAPYLLGE-----------VSMIDPNICISCGQCMEVCPVGAITI 242

Query: 121 GPNFEFATE 129
               +    
Sbjct: 243 DWEHDIPNF 251


>gi|88603223|ref|YP_503401.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methanospirillum hungatei
           JF-1]
 gi|88188685|gb|ABD41682.1| formylmethanofuran dehydrogenase, subunit G [Methanospirillum
           hungatei JF-1]
          Length = 229

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/110 (30%), Positives = 42/110 (38%), Gaps = 12/110 (10%)

Query: 24  LRYFFKAKTTINYPF---EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80
           L +FF+ K  IN+     E   T    RG   +         C  C LC+ ICPA     
Sbjct: 27  LEFFFRKKWIINFLHPRTEPLETPLHARGVPEIT-----GRACTHCYLCQMICPA----P 77

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
            +      G        I    CI CGLC E CP   +  G  F+ AT +
Sbjct: 78  GALEVKKTGRPAVWNPHIYPGHCIRCGLCVEICPEVVLESGRIFQKATRS 127



 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 4/70 (5%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAIT----IESGPRCHDGTRRTVRYDIDMIKCI 104
           G  A+         CI C LC  ICP   +      +   R       ++   I+ + CI
Sbjct: 86  GRPAVWNPHIYPGHCIRCGLCVEICPEVVLESGRIFQKATRSETWMNYSIHIRINPVTCI 145

Query: 105 YCGLCQEACP 114
            CG C  ACP
Sbjct: 146 GCGSCAVACP 155



 Score = 38.9 bits (89), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/86 (17%), Positives = 22/86 (25%), Gaps = 8/86 (9%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQ--------AITIESGPRCHDGTRRTVRYDIDM 100
             +           CI C  C   CP          +    +           + +    
Sbjct: 130 WMNYSIHIRINPVTCIGCGSCAVACPINRQTDPVLTSKGTVTTDEVILAVENGIAHVFHE 189

Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEF 126
            KC  C  C+E CP  +I      E 
Sbjct: 190 EKCTGCSTCEEQCPTRSIQVSRILEM 215


>gi|257784216|ref|YP_003179433.1| Ferredoxin hydrogenase [Atopobium parvulum DSM 20469]
 gi|257472723|gb|ACV50842.1| Ferredoxin hydrogenase [Atopobium parvulum DSM 20469]
          Length = 531

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQ 110
              +E+CI C +C  +CP QAI     P          G+    R DID  KC+ CG C 
Sbjct: 154 YIDQEKCIQCGMCFKVCPYQAIHHHVRPCAAACGMDAIGSDEHGRADIDYEKCVSCGQCL 213

Query: 111 EACPVDAI 118
             CP  AI
Sbjct: 214 VNCPFGAI 221



 Score = 42.8 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 5/64 (7%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-----DIDMIKCIYCGLCQEACPVDA 117
           C AC+              + P      +  + +      ID  KCI CG+C + CP  A
Sbjct: 115 CNACEDNVYRVTNACQGCLAHPCREICPKEAISFVDKKAYIDQEKCIQCGMCFKVCPYQA 174

Query: 118 IVEG 121
           I   
Sbjct: 175 IHHH 178


>gi|167463835|ref|ZP_02328924.1| formate dehydrogenase chain A [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322384672|ref|ZP_08058350.1| oxidoreductase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
 gi|321150557|gb|EFX44038.1| oxidoreductase-like protein [Paenibacillus larvae subsp. larvae
           B-3650]
          Length = 982

 Score = 54.3 bits (129), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 3/84 (3%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-- 97
           +      ++ + +   Y    ++CI C  C   C    +             R +  D  
Sbjct: 124 RPFRPKGYKKDMSNPFYRYDPDQCILCGRCVEACQDLQVNETLSIDWEREIPRVIWDDDK 183

Query: 98  -IDMIKCIYCGLCQEACPVDAIVE 120
            I+   C+ CG C   CP +A++E
Sbjct: 184 AINESSCVSCGHCVTVCPCNALME 207


>gi|95931039|ref|ZP_01313767.1| 4Fe-4S ferredoxin, iron-sulfur binding [Desulfuromonas acetoxidans
           DSM 684]
 gi|95132935|gb|EAT14606.1| 4Fe-4S ferredoxin, iron-sulfur binding [Desulfuromonas acetoxidans
           DSM 684]
          Length = 770

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 37/109 (33%), Gaps = 2/109 (1%)

Query: 12  FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71
           +  +++    +  R   K +    +   K    PR RG   +        RCI+C  C  
Sbjct: 660 YCSDWLNGLEVVERK--KLEVIPQHRLSKELFRPRNRGRLNITDGREETTRCISCGTCRD 717

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
                    E+  R  +G   T  Y  D   CI CG+C   CP      
Sbjct: 718 CSMCLEACPEAAIRRIEGPNGTFEYVSDDHVCIGCGICAGLCPCGIWTM 766


>gi|225374841|ref|ZP_03752062.1| hypothetical protein ROSEINA2194_00464 [Roseburia inulinivorans DSM
           16841]
 gi|225213302|gb|EEG95656.1| hypothetical protein ROSEINA2194_00464 [Roseburia inulinivorans DSM
           16841]
          Length = 468

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 26/68 (38%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110
               ++C  C  C   CP  AI     P         + YD      ID  KCI CG C 
Sbjct: 124 HIDPQKCKECGKCAQACPYNAIAHLKRPCKFSCPVNAITYDEYGISVIDEKKCIRCGKCI 183

Query: 111 EACPVDAI 118
            +CP  AI
Sbjct: 184 HSCPFGAI 191


>gi|147920955|ref|YP_685237.1| putative hydrogenase 2(4Fe-4S) ferredoxin component (EchF-like)
           [uncultured methanogenic archaeon RC-I]
 gi|110620633|emb|CAJ35911.1| putative hydrogenase 2(4Fe-4S) ferredoxin component (EchF-like)
           [uncultured methanogenic archaeon RC-I]
          Length = 221

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 16/124 (12%)

Query: 12  FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71
            +K   GAF   +   FK   T++  +  G  +  +R           +E+C  C  C  
Sbjct: 1   MMKGKFGAFTGLIANLFKKPVTVDVDY--GFLAETYRAMPR-----RDDEKCTGCGACFE 53

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET- 130
            C + A  I                 +D   CI+CG C +ACP  A+      +   E  
Sbjct: 54  RCSSGATKITDKD-------GQRTVTVDGNNCIFCGRCADACPEHALSLTFEPQTPEEKA 106

Query: 131 -RQE 133
            R+E
Sbjct: 107 AREE 110


>gi|4972240|emb|CAB43934.1| pyruvate ferredoxin oxidoreductase [Clostridium pasteurianum]
          Length = 1181

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 30/101 (29%), Gaps = 16/101 (15%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES--------------- 82
           FE G+ +   RG   +      + +C+ C +C  +C    I                   
Sbjct: 673 FEIGAAAYEKRGTAVMVPEW-DKTKCVQCNMCSFVCSHATIRPFMLDGDEVKAAPSNIKL 731

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                          +  + C+ CG C   CP  AI   P 
Sbjct: 732 ADTKPKAGEYKFTVSVTPLDCMGCGECITVCPTKAITMVPQ 772


>gi|297570585|ref|YP_003691929.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
            protein [Desulfurivibrio alkaliphilus AHT2]
 gi|296926500|gb|ADH87310.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
            protein [Desulfurivibrio alkaliphilus AHT2]
          Length = 1029

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 7/63 (11%)

Query: 59   GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              E+CI C +CE  CP +AI +           +  + +     C  CG+C   CP  AI
Sbjct: 951  ETEKCIGCGVCETFCPYKAIRLHKVE-------KGRKAETVTASCKGCGVCAARCPTLAI 1003

Query: 119  VEG 121
              G
Sbjct: 1004 DMG 1006



 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 27/92 (29%), Gaps = 12/92 (13%)

Query: 47  FRGEHALRRYPNGEERCIACKLCEAIC-------PAQAITIESGPRCHDGTRRTVRYDID 99
           F      R     EE+C  C  C   C         + ++  S  R          Y ID
Sbjct: 106 FTARIRRRPRYIDEEKCTGCGQCAQYCLKLLGDDYNENLSRTSAIRIEYPQAVPTTYHID 165

Query: 100 MIKCIY-----CGLCQEACPVDAIVEGPNFEF 126
              C+      CGLC   C   AI      E 
Sbjct: 166 DSVCLRLKHNTCGLCTAVCQARAIDFSQQEEI 197



 Score = 37.8 bits (86), Expect = 0.45,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGP 122
            ++  KCI CG+C+  CP  AI    
Sbjct: 949 RVETEKCIGCGVCETFCPYKAIRLHK 974


>gi|225872009|ref|YP_002753463.1| formate dehydrogenase, alpha subunit [Acidobacterium capsulatum
           ATCC 51196]
 gi|225791532|gb|ACO31622.1| formate dehydrogenase, alpha subunit [Acidobacterium capsulatum
           ATCC 51196]
          Length = 1005

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 3/83 (3%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY---D 97
                 +  +H    Y     +CI C  C   C    +             R +     +
Sbjct: 136 PWQPKPYPQDHTNPFYRYDPNQCILCGRCVEACQNYQVNETLSINWESDHPRVLWDGGSE 195

Query: 98  IDMIKCIYCGLCQEACPVDAIVE 120
           I    C+ CG C   CP +A++E
Sbjct: 196 IGGSSCVSCGHCVTVCPCNALME 218



 Score = 39.3 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 24/74 (32%), Gaps = 9/74 (12%)

Query: 49  GEHALRRYPNGEERCIACKL----CEA-----ICPAQAITIESGPRCHDGTRRTVRYDID 99
           GE   R   N +  C  C      C       +   +       P+ +        Y  D
Sbjct: 95  GEAFDRILKNHQLYCSVCDNNNQDCTVHNTTALLDVEHQKYPWQPKPYPQDHTNPFYRYD 154

Query: 100 MIKCIYCGLCQEAC 113
             +CI CG C EAC
Sbjct: 155 PNQCILCGRCVEAC 168


>gi|206890550|ref|YP_002249479.1| pyridine nucleotide-disulfide oxidoreductase [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742488|gb|ACI21545.1| pyridine nucleotide-disulfide oxidoreductase [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 805

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 34/121 (28%), Gaps = 21/121 (17%)

Query: 12  FLKEFVGAFFLCLRYFFKAKTTI----NYPFEKGSTSPRFRGEHALRRYPNGEE-----R 62
            L E++            A  T       P+EK       R           E       
Sbjct: 696 LLAEYLHG------ELMHAPITRDLRPRIPYEKVKIDYYERCRAVTSLEQEAERCLSCGS 749

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C  C +CE  C   AI+    P           Y +D  KCI CG C   CP        
Sbjct: 750 CRDCHMCEMTCYWGAISRVEKPDGRY------EYVVDENKCIACGFCVGICPCGVWEMVE 803

Query: 123 N 123
           N
Sbjct: 804 N 804


>gi|18312371|ref|NP_559038.1| pyruvate ferredoxin oxidoreductase delta subunit (porD)
           [Pyrobaculum aerophilum str. IM2]
 gi|18159822|gb|AAL63220.1| pyruvate ferredoxin oxidoreductase delta subunit (porD)
           [Pyrobaculum aerophilum str. IM2]
          Length = 102

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 28/65 (43%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++RCI C+LC   CP   I    G          V+Y++    C  CG+C   CP  AI
Sbjct: 37  HDDRCIRCQLCWLYCPEGTIAEIKGVFKVGNKTYDVKYEVIYDYCKGCGICANECPTKAI 96

Query: 119 VEGPN 123
              P 
Sbjct: 97  EMVPE 101


>gi|301063579|ref|ZP_07204096.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300442311|gb|EFK06559.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 429

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 33/102 (32%), Gaps = 6/102 (5%)

Query: 38  FEKGSTSPR--FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            E            +   R   NG + CI C  C   CP +           +       
Sbjct: 323 EEMPILPDTDAIMVQGRDRIVLNGNDPCINCGECIRACPVRIPVNMLVRLLENSQYENAA 382

Query: 96  YDIDMIKCIYCGLCQEAC----PVDAIVEGPNFEFATETRQE 133
            + D++ CI CGLC   C    PV   +    +E +   R E
Sbjct: 383 REYDLLSCIECGLCSYVCEAKIPVFHYIMLGKYELSLMERAE 424


>gi|227519756|ref|ZP_03949805.1| pyruvate synthase [Enterococcus faecalis TX0104]
 gi|227072844|gb|EEI10807.1| pyruvate synthase [Enterococcus faecalis TX0104]
          Length = 1177

 Score = 54.3 bits (129), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96
            AL       ++C  C  C  +CP  AI       E       G              R 
Sbjct: 679 IALEVPEWQIDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130
            + +  C  CGLC +ACPV   AI+  P +E   E 
Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773


>gi|295098859|emb|CBK87948.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric
           [Eubacterium cylindroides T2-87]
          Length = 1181

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 26/99 (26%), Gaps = 15/99 (15%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ--------------AITIESGP 84
           E G+ +   RG            +CI C  C  +C                 A       
Sbjct: 674 ETGAAAYEKRGTAVTVPEW-DATKCIQCNQCAFVCSHATIRPFILDEKEAEAAPENIKLA 732

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                        +  + C+ CG C   CP  AI   P 
Sbjct: 733 DSKHAPGMKYTMSVTPLDCMGCGECITVCPTGAIKMVPQ 771


>gi|150389480|ref|YP_001319529.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alkaliphilus metalliredigens QYMF]
 gi|149949342|gb|ABR47870.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Alkaliphilus
           metalliredigens QYMF]
          Length = 370

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 11/56 (19%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           CI C++C   CP  AI +E                ID   CI CG C   CP  AI
Sbjct: 196 CIGCQMCVENCPVDAIHMEDKKAV-----------IDPEVCIGCGECITVCPKRAI 240



 Score = 40.5 bits (93), Expect = 0.083,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 14/36 (38%)

Query: 87  HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                   +  +    CI C +C E CPVDAI    
Sbjct: 180 KQMQHSDAKPKVMENLCIGCQMCVENCPVDAIHMED 215


>gi|159119394|ref|XP_001709915.1| Fe-hydrogenase-1 [Giardia lamblia ATCC 50803]
 gi|13506793|gb|AAK28337.1| Fe-hydrogenase [Giardia intestinalis]
 gi|157438033|gb|EDO82241.1| Fe-hydrogenase-1 [Giardia lamblia ATCC 50803]
          Length = 474

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 24/68 (35%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              +CI C +C   C  Q I +                 +    CI CG C   CPVDAI
Sbjct: 21  DYAKCIGCNMCIKACDVQGIGVYKQNEKPKYPPIVKLSTLFNSDCIGCGQCATICPVDAI 80

Query: 119 VEGPNFEF 126
               N E 
Sbjct: 81  APKNNLEI 88



 Score = 34.3 bits (77), Expect = 6.4,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 14/33 (42%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
            ID  KCI C +C +AC V  I      E    
Sbjct: 19  MIDYAKCIGCNMCIKACDVQGIGVYKQNEKPKY 51


>gi|307152881|ref|YP_003888265.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Cyanothece sp. PCC
           7822]
 gi|306983109|gb|ADN14990.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Cyanothece sp. PCC
           7822]
          Length = 1220

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 29/100 (29%), Gaps = 24/100 (24%)

Query: 58  NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRYDID--MI 101
                C+ C  C  +CP                A       +  D   + +++ I     
Sbjct: 697 WDPNVCVQCGKCVMVCPHAVIRSKVYEEQELANAPDTFKSTQAKDHDWKALKFTIQVAAE 756

Query: 102 KCIYCGLCQEACPV--------DAIVEGPNFEFATETRQE 133
            C  CG+C + CP          AI   P      + R+ 
Sbjct: 757 DCTGCGICVDVCPAKNKSQPKLKAINMEPQLPLREQEREN 796


>gi|332376414|gb|AEE63347.1| unknown [Dendroctonus ponderosae]
          Length = 105

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 21/44 (47%)

Query: 3  IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPR 46
          +       +F  E +    + L + FK   TINYPFEKG  SP 
Sbjct: 54 VTDRAALTMFWTELIRGLGITLAHIFKEPATINYPFEKGPLSPH 97


>gi|291614141|ref|YP_003524298.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Sideroxydans lithotrophicus ES-1]
 gi|291584253|gb|ADE11911.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Sideroxydans lithotrophicus ES-1]
          Length = 656

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 21/60 (35%), Gaps = 4/60 (6%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C  C  C   CP  A+          G      YD    KCI C +C + CP   I  G
Sbjct: 598 MCFECDNCVVYCPQTAVYRVKKTESTLGRYVATDYD----KCIGCHICADVCPTGYIQMG 653


>gi|154420549|ref|XP_001583289.1| 4Fe-4S binding domain containing protein [Trichomonas vaginalis G3]
 gi|121917530|gb|EAY22303.1| 4Fe-4S binding domain containing protein [Trichomonas vaginalis G3]
          Length = 499

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 6/65 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI C  C  ICP  A+T  +  +          + +    C+ CG C + CP  AI
Sbjct: 130 NHAACIDCYKCVDICPTGALTHGNHLQT------FGHFGLRDSGCVSCGACVDVCPTKAI 183

Query: 119 VEGPN 123
               N
Sbjct: 184 SVTDN 188



 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 16/50 (32%), Gaps = 2/50 (4%)

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPVDAIVEGP 122
           A A  +   P             I +    CI C  C + CP  A+  G 
Sbjct: 104 ANAYKMIQDPTRKQTHIDITTGSIQLNHAACIDCYKCVDICPTGALTHGN 153


>gi|325846673|ref|ZP_08169588.1| pyruvate synthase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481431|gb|EGC84472.1| pyruvate synthase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 1176

 Score = 53.9 bits (128), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 38/114 (33%), Gaps = 20/114 (17%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESG 83
           FE G+T    RG  AL       + CI C  C  +CP                A      
Sbjct: 664 FEPGTTKYEKRG-IALNVPEWQIDNCIQCNQCSYVCPHAVIRPFLVTEDEKSNAPEGFET 722

Query: 84  PRC--HDGTRRTVRYDIDMIKCIYCGLCQEAC--PVDAIVEGPNFEFATETRQE 133
            +           R  I  + C  CG C + C  P  A++  P FE   E  ++
Sbjct: 723 KKAIGKGMDGYDFRIQISPLDCTGCGNCADVCPAPKKALLMKP-FEEEVEKEKD 775


>gi|295100394|emb|CBK97939.1| Iron only hydrogenase large subunit, C-terminal domain
           [Faecalibacterium prausnitzii L2-6]
          Length = 517

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 34/86 (39%), Gaps = 8/86 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112
            +E+CI C  C  +CP  AI     P         +  D      ID  KC+ CG C   
Sbjct: 152 DQEKCIKCGRCVGVCPYNAIVKTERPCAAACGMGAIHSDELGRAEIDYSKCVSCGQCLVN 211

Query: 113 CPVDAI-VEGPNFEF-ATETRQELYY 136
           CP  AI  +G  ++      R +  Y
Sbjct: 212 CPFGAIADKGQIYQLIQGFNRGDRIY 237



 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 12/85 (14%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P          R    L +  +  + C+A   C  +CP +AIT ESG           R 
Sbjct: 102 PLVNVIKFACNRCPEKLVKVSDLCQGCLA-HPCMEVCPKKAITWESG-----------RS 149

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEG 121
            ID  KCI CG C   CP +AIV+ 
Sbjct: 150 TIDQEKCIKCGRCVGVCPYNAIVKT 174


>gi|259502158|ref|ZP_05745060.1| dihydroorotate dehydrogenase [Lactobacillus antri DSM 16041]
 gi|259169776|gb|EEW54271.1| dihydroorotate dehydrogenase [Lactobacillus antri DSM 16041]
          Length = 292

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 23/82 (28%), Gaps = 6/82 (7%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           K                    ++CI C  C   C   A       +             D
Sbjct: 187 KNVVPTSQLDRDYKVYPKIDWDKCIGCGRCFISCQDGAH------QAMGWDDEKRLPTFD 240

Query: 100 MIKCIYCGLCQEACPVDAIVEG 121
             KC+ C LC   CPV AI  G
Sbjct: 241 KSKCVGCQLCALVCPVHAIKLG 262


>gi|212696067|ref|ZP_03304195.1| hypothetical protein ANHYDRO_00603 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676696|gb|EEB36303.1| hypothetical protein ANHYDRO_00603 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 1176

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 38/114 (33%), Gaps = 20/114 (17%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESG 83
           FE G+T    RG  AL       + CI C  C  +CP                A      
Sbjct: 664 FEPGTTKYEKRG-IALNVPEWQIDNCIQCNQCSYVCPHAVIRPFLVTEDEKANAPEGFET 722

Query: 84  PRC--HDGTRRTVRYDIDMIKCIYCGLCQEAC--PVDAIVEGPNFEFATETRQE 133
            +           R  I  + C  CG C + C  P  A++  P FE   E  ++
Sbjct: 723 KKAIGKGMDGYDFRIQISPLDCTGCGNCADVCPAPKKALLMKP-FEEEVEKEKD 775


>gi|327399635|ref|YP_004340504.1| glutamate synthase [Hippea maritima DSM 10411]
 gi|327182264|gb|AEA34445.1| Glutamate synthase (NADPH) [Hippea maritima DSM 10411]
          Length = 504

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 19/60 (31%), Gaps = 9/60 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            + RCI CK C   C   A   +                     C+ C  C   CP +AI
Sbjct: 20  DDYRCIRCKACVEQCSFDATFYDEEEDKVWNWN---------ANCVGCNRCVAICPTEAI 70


>gi|260654695|ref|ZP_05860185.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Jonquetella
           anthropi E3_33 E1]
 gi|260630711|gb|EEX48905.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Jonquetella
           anthropi E3_33 E1]
          Length = 800

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 26/78 (33%), Gaps = 16/78 (20%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRR----------------TVRYDIDMIKCI 104
           ++CI C  C  +CP  AI                                R  +  + C+
Sbjct: 690 DKCIQCNQCAMVCPHAAIRPVLADDEEMKDAPAAFKTVDARGKELAGLKFRMQVSPLDCM 749

Query: 105 YCGLCQEACPVDAIVEGP 122
            CG C + CPV A+   P
Sbjct: 750 GCGNCADICPVKALEMSP 767


>gi|171185318|ref|YP_001794237.1| thiamine pyrophosphate binding domain-containing protein
           [Thermoproteus neutrophilus V24Sta]
 gi|170934530|gb|ACB39791.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Thermoproteus neutrophilus V24Sta]
          Length = 590

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 10/63 (15%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           Y    ++C+ C LC  +    AI      +            ID   C  CG+C E CP 
Sbjct: 524 YWVDVDKCVGCSLCYGLLRCSAIAPRGDRKA----------YIDPALCTGCGMCAEVCPT 573

Query: 116 DAI 118
            AI
Sbjct: 574 GAI 576


>gi|323698801|ref|ZP_08110713.1| response regulator receiver protein [Desulfovibrio sp. ND132]
 gi|323458733|gb|EGB14598.1| response regulator receiver protein [Desulfovibrio desulfuricans
           ND132]
          Length = 1142

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 13/83 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGP-------RCHDGTRRTVRYDIDMIKCIYCGLCQE 111
              +CI+C  C  +CP +  +  +                    Y +D+  CI C  C E
Sbjct: 113 DPAKCISCGRCAEVCPVRVPSEFNAGLTERTAVHLPVPYAIPNHYVLDLDNCIRCWKCHE 172

Query: 112 ACPVDAIVEGPNFEFATETRQEL 134
           ACP  AI      +F  E R++ 
Sbjct: 173 ACPTGAI------DFKFEDRRDF 189



 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 9/58 (15%)

Query: 60   EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
               C  C+ C + CP  A  +++            +  +D I C  CG C   CP  A
Sbjct: 1071 HSLCSLCQACVSACPYGARAVDTTEE---------KIIVDEILCQGCGACAAVCPNSA 1119



 Score = 38.5 bits (88), Expect = 0.27,   Method: Composition-based stats.
 Identities = 12/19 (63%), Positives = 12/19 (63%)

Query: 98  IDMIKCIYCGLCQEACPVD 116
           ID  KCI CG C E CPV 
Sbjct: 112 IDPAKCISCGRCAEVCPVR 130


>gi|220904812|ref|YP_002480124.1| molybdopterin oxidoreductase Fe4S4 region [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219869111|gb|ACL49446.1| molybdopterin oxidoreductase Fe4S4 region [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 374

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 9/98 (9%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYD 97
                F  ++          RC+ C  C ++C A     AI  + G R        V   
Sbjct: 149 PEPGSFPLDNDHPMITRDFSRCVQCGRCASVCSAVQVNDAIPPQFGRRAEKEAWWPVV-- 206

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            D  +C +CG C + CP  A+    ++  A   R++  
Sbjct: 207 -DYQRCTHCGECVQVCPTGALTAKKSYGLAA--REDRV 241


>gi|307719056|ref|YP_003874588.1| hypothetical protein STHERM_c13750 [Spirochaeta thermophila DSM
           6192]
 gi|306532781|gb|ADN02315.1| hypothetical protein STHERM_c13750 [Spirochaeta thermophila DSM
           6192]
          Length = 595

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 10/68 (14%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             L  Y    ++CI C +C   CP  AIT E          R   + ID  KCI CG C 
Sbjct: 535 VELVTYTILPDKCIGCGVCARRCPVNAITGE----------RKQPHVIDQDKCIKCGACY 584

Query: 111 EACPVDAI 118
           EAC  +AI
Sbjct: 585 EACKFNAI 592



 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 8/72 (11%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
            I             V Y I   KCI CG+C   CPV+AI          E +Q    D+
Sbjct: 523 HIVEKRCPTGKCVELVTYTILPDKCIGCGVCARRCPVNAI--------TGERKQPHVIDQ 574

Query: 139 ERLLNNGDRWES 150
           ++ +  G  +E+
Sbjct: 575 DKCIKCGACYEA 586


>gi|291546307|emb|CBL19415.1| Iron only hydrogenase large subunit, C-terminal domain
           [Ruminococcus sp. SR1/5]
          Length = 340

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 7/83 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110
              +++CI C  C+A+CP  AI  +  P       + +  D      I+  KC+ CG+C 
Sbjct: 146 FIDQDKCIHCGRCKAVCPYDAIAHKERPCERACGVKAIESDEQGRASINQDKCVSCGMCM 205

Query: 111 EACPVDAI-VEGPNFEFATETRQ 132
            +CP  AI  +   F+ +   R+
Sbjct: 206 VSCPFGAISDKSQIFQLSHALRE 228



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 13/66 (19%)

Query: 57  PNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 C  C    C   CP  AI++ +G              ID  KCI+CG C+  CP
Sbjct: 115 YEVSNMCRGCVAHPCLLTCPKGAISMVNGKSF-----------IDQDKCIHCGRCKAVCP 163

Query: 115 VDAIVE 120
            DAI  
Sbjct: 164 YDAIAH 169


>gi|253741867|gb|EES98726.1| Fe-hydrogenase-1 [Giardia intestinalis ATCC 50581]
          Length = 474

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 24/68 (35%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              +CI C +C   C  Q I +                 +    CI CG C   CPVDAI
Sbjct: 21  DYAKCIGCNMCIKACDVQGIGVYKQNEKPKYPPIVKLSTLFKSDCIGCGQCATICPVDAI 80

Query: 119 VEGPNFEF 126
               N E 
Sbjct: 81  APKNNIEI 88



 Score = 35.1 bits (79), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 15/46 (32%)

Query: 84  PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
                G        ID  KCI C +C +AC V  I      E    
Sbjct: 6   QHDVTGVDYNNAIMIDYAKCIGCNMCIKACDVQGIGVYKQNEKPKY 51


>gi|261404864|ref|YP_003241105.1| pyruvate/ketoisovalerate oxidoreductase subunit gamma
           [Paenibacillus sp. Y412MC10]
 gi|261281327|gb|ACX63298.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit
           [Paenibacillus sp. Y412MC10]
          Length = 340

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 1/58 (1%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           E CI C  C+ +CP   I  E+ P    G  +     ID   C  C  C EACP  A+
Sbjct: 255 EDCIHCAACDTVCPDFCIVWETKPD-KRGNMQMFMKGIDYQYCKGCLKCIEACPTTAL 311



 Score = 35.5 bits (80), Expect = 2.3,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 4/46 (8%)

Query: 89  GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134
           G+R+    +  +  CI+C  C   CP   IV     E   + R  +
Sbjct: 243 GSRQGYLPEYKIEDCIHCAACDTVCPDFCIVW----ETKPDKRGNM 284


>gi|294338873|emb|CAZ87210.1| BoxA (Benzoyl-CoA oxygenase component A) [Thiomonas sp. 3As]
          Length = 424

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 11/69 (15%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
              LR++    E CI C  CEA CP  AIT ++             Y +D  KC +C  C
Sbjct: 6   PAVLRQHLIDPEICIRCNTCEATCPVGAITHDAN-----------NYVVDADKCNFCMAC 54

Query: 110 QEACPVDAI 118
              CP  AI
Sbjct: 55  VPPCPTGAI 63



 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 12/23 (52%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVE 120
           ID   CI C  C+  CPV AI  
Sbjct: 14  IDPEICIRCNTCEATCPVGAITH 36


>gi|304316578|ref|YP_003851723.1| NADH dehydrogenase (quinone) [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778080|gb|ADL68639.1| NADH dehydrogenase (quinone) [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 596

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 15/97 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            LRY F+ +   +   ++           AL R+    E+C  C +C   CP  AI+   
Sbjct: 513 TLRY-FRDEYEAHIKEKRCPAGVC----QALLRFRIDPEKCKGCGICAKNCPTNAISG-- 565

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
                   +    + ID  KCI CG C + CP DAI 
Sbjct: 566 --------KVKQPHVIDQDKCIKCGTCMDKCPFDAIY 594


>gi|227501325|ref|ZP_03931374.1| hydrogenase large subunit domain protein [Anaerococcus tetradius
           ATCC 35098]
 gi|227216558|gb|EEI81964.1| hydrogenase large subunit domain protein [Anaerococcus tetradius
           ATCC 35098]
          Length = 508

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV------RYDIDMIKCIYCGLCQ 110
              +++CI C  C   CP  AI  +  P       + +      R DI+  KC+ CG C 
Sbjct: 144 YIDQDKCIKCGKCVDACPYHAINHQKRPCAESCGVKAISSDDLGRADINEDKCVACGRCI 203

Query: 111 EACPVDAI 118
            +CP  AI
Sbjct: 204 ISCPFGAI 211



 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 5/65 (7%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-----DIDMIKCIYCGLCQEACPVDA 117
           C AC   +     Q       P  +   +  V Y      ID  KCI CG C +ACP  A
Sbjct: 105 CEACPENKVTVTDQCHACIGHPCVNVCPKNAVSYSAKGAYIDQDKCIKCGKCVDACPYHA 164

Query: 118 IVEGP 122
           I    
Sbjct: 165 INHQK 169


>gi|260588669|ref|ZP_05854582.1| iron-sulfur cluster-binding protein [Blautia hansenii DSM 20583]
 gi|331081982|ref|ZP_08331110.1| hypothetical protein HMPREF0992_00034 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260541144|gb|EEX21713.1| iron-sulfur cluster-binding protein [Blautia hansenii DSM 20583]
 gi|330405577|gb|EGG85107.1| hypothetical protein HMPREF0992_00034 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 374

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 11/62 (17%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              +  C+ C++C  IC   A   E+               I+  KC+ CG C   CP D
Sbjct: 191 HVDQNLCVGCQMCAKICAHDAPEFENKKA-----------TINHDKCVGCGRCIGVCPKD 239

Query: 117 AI 118
           AI
Sbjct: 240 AI 241


>gi|94967507|ref|YP_589555.1| 4Fe-4S ferredoxin, iron-sulfur binding [Candidatus Koribacter
           versatilis Ellin345]
 gi|94549557|gb|ABF39481.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Candidatus
           Koribacter versatilis Ellin345]
          Length = 455

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 30/97 (30%), Gaps = 9/97 (9%)

Query: 25  RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84
           RY  K +               F      +     E RCI C  C   CP   +    G 
Sbjct: 31  RYLKKLRVIEESARHAAEQGAMFSEGPQAQHPLIDESRCIGCGTCSTACPEGDVLGIIGG 90

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           +            +   KCI  G C EACPV AI   
Sbjct: 91  KAAI---------VKPYKCIGHGFCAEACPVGAITMT 118


>gi|323494238|ref|ZP_08099350.1| formate dehydrogenase, alpha subunit [Vibrio brasiliensis LMG
           20546]
 gi|323311401|gb|EGA64553.1| formate dehydrogenase, alpha subunit [Vibrio brasiliensis LMG
           20546]
          Length = 1402

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 14/79 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIE--------------SGPRCHDGTRRTVRYDIDMIKCI 104
              RCI+C  C   C  QA+                    R H G+ R+ R  +   KC+
Sbjct: 631 DANRCISCGQCIQACSEQAVHGILNFVHDQNGRPALRPDDRPHFGSSRSGRILMGDSKCV 690

Query: 105 YCGLCQEACPVDAIVEGPN 123
            CG C +ACP  A+V+  +
Sbjct: 691 QCGACVQACPTGAMVDSRD 709



 Score = 33.5 bits (75), Expect = 9.8,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 20/68 (29%), Gaps = 4/68 (5%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100
                   G     R   G+ +C+ C  C   CP  A+            +      I  
Sbjct: 667 RPDDRPHFGSSRSGRILMGDSKCVQCGACVQACPTGAMVDSRDRSQGREEQLKQVDTI-- 724

Query: 101 IKCIYCGL 108
             C YCG+
Sbjct: 725 --CTYCGV 730


>gi|320105609|ref|YP_004181199.1| formate dehydrogenase subunit alpha [Terriglobus saanensis SP1PR4]
 gi|319924130|gb|ADV81205.1| formate dehydrogenase, alpha subunit [Terriglobus saanensis SP1PR4]
          Length = 1021

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 3/85 (3%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR--- 95
           ++      F  +H+   Y    ++CI C  C   C    +      R  D   R +    
Sbjct: 155 QRPFLHKPFEQDHSNPFYRYDPDQCILCGRCVEACQDVQVNETLTIRWEDEHPRVLWDGG 214

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVE 120
             I    C+ CG C   CP +A++E
Sbjct: 215 EQIAGSSCVSCGHCITVCPCNALME 239



 Score = 42.0 bits (97), Expect = 0.029,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 33/119 (27%), Gaps = 21/119 (17%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGEHALR-----RYPNGEERCIAC----KLCEAICPAQ 76
              +A +T   P E    S   R + A R        N +  C  C      C       
Sbjct: 89  QLVRACSTEIAP-EMRVLSVSHRADVAQREAMDRILQNHDLYCTVCDNNNGNCTIHNTTG 147

Query: 77  AITIESGPRCHDG-----TRRTVRYDIDMIKCIYCGLCQEAC------PVDAIVEGPNF 124
            ++I+   R               Y  D  +CI CG C EAC          I      
Sbjct: 148 EMSIQHQQRPFLHKPFEQDHSNPFYRYDPDQCILCGRCVEACQDVQVNETLTIRWEDEH 206


>gi|302392544|ref|YP_003828364.1| cobyrinic acid ac-diamide synthase [Acetohalobium arabaticum DSM
           5501]
 gi|302204621|gb|ADL13299.1| Cobyrinic acid ac-diamide synthase [Acetohalobium arabaticum DSM
           5501]
          Length = 288

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 14/63 (22%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            EE CI C LC+ +C   A+T +              Y+ID +KC  CGLC   CP DA+
Sbjct: 64  DEEECIDCGLCKKLCNFGAVTDD--------------YEIDEVKCEGCGLCAAKCPTDAL 109

Query: 119 VEG 121
              
Sbjct: 110 QLT 112


>gi|237739850|ref|ZP_04570331.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. 2_1_31]
 gi|229423458|gb|EEO38505.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. 2_1_31]
          Length = 1188

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 39/120 (32%), Gaps = 20/120 (16%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT---IESGPRCHDGTRRTV 94
           FE G+ +   RG        N  ++CI C  C  +CP  AI    I    +       + 
Sbjct: 677 FENGTAAFEKRGVAVDVPIWN-LDKCIQCNQCSYVCPHAAIRSFLITDEEKAASPIEFST 735

Query: 95  -------------RYDIDMIKCIYCGLCQEACPVDAIVEGPN---FEFATETRQELYYDK 138
                        R  +  + C  CG C   CP  A+   P     E   + +    Y K
Sbjct: 736 LKANGKGLENLSYRIQVTPLDCTGCGSCANVCPAKALDMNPIAVALENQEDKKASYIYSK 795


>gi|303325627|ref|ZP_07356070.1| carbon monoxide-induced hydrogenase, iron-sulfur cluster-binding
           subunit [Desulfovibrio sp. 3_1_syn3]
 gi|302863543|gb|EFL86474.1| carbon monoxide-induced hydrogenase, iron-sulfur cluster-binding
           subunit [Desulfovibrio sp. 3_1_syn3]
          Length = 192

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 46/130 (35%), Gaps = 14/130 (10%)

Query: 20  FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79
             +  R   +  +T  +P  +  T  R RG   +         C+ C +C  +C A AI 
Sbjct: 5   LKVLFRNLLEGPSTDPFPLGETFTPARLRGRAKV-----DPTLCMGCGVCRHVCAAGAIN 59

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139
           I   P             I    C  C  C+  CP  A+    ++  A    ++     +
Sbjct: 60  ITHLPDGSGY-----TITIWQNSCCLCASCRHYCPTGAMSISTDWHSAHPEEEKF----D 110

Query: 140 RLLNNGDRWE 149
           RL  +  ++E
Sbjct: 111 RLEQHTIKYE 120


>gi|317050948|ref|YP_004112064.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfurispirillum indicum S5]
 gi|316946032|gb|ADU65508.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfurispirillum indicum S5]
          Length = 779

 Score = 53.9 bits (128), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 31/90 (34%), Gaps = 8/90 (8%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
           +P      S +     A R    G   C  C  CE ICP QAI              T  
Sbjct: 693 HPMNPQRVSEQEADAEADRCMSCGY--CRDCHFCEDICPEQAIVRRENGDG------TFE 744

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           Y     KCI CG+C   CP    V   N E
Sbjct: 745 YCSLDEKCIGCGICAGVCPCGIWVMEDNLE 774


>gi|118467681|ref|YP_889914.1| ferredoxin/ferredoxin--NADP reductase [Mycobacterium smegmatis str.
           MC2 155]
 gi|118168968|gb|ABK69864.1| probable ferredoxin/ferredoxin--NADP reductase [Mycobacterium
           smegmatis str. MC2 155]
          Length = 557

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 22/72 (30%), Gaps = 3/72 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + C +   C   CP   I          G        ID   C+ CG C  ACP
Sbjct: 1   MPHVITQSCCSDGSCVYACPVNCIHPSPDE---PGFATAEMLYIDPDACVDCGACVSACP 57

Query: 115 VDAIVEGPNFEF 126
           V AI      E 
Sbjct: 58  VGAIAPDTRLEP 69


>gi|237736591|ref|ZP_04567072.1| hydrogenase [Fusobacterium mortiferum ATCC 9817]
 gi|229420453|gb|EEO35500.1| hydrogenase [Fusobacterium mortiferum ATCC 9817]
          Length = 642

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 10/62 (16%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E+CI C  C  +CP + I            +   ++ ID  +C +CG C  ACPV AI E
Sbjct: 221 EKCIGCTACARVCPVKCIDG----------KLKEKHTIDTDRCTHCGQCVAACPVGAIFE 270

Query: 121 GP 122
           G 
Sbjct: 271 GD 272


>gi|239616963|ref|YP_002940285.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Kosmotoga
           olearia TBF 19.5.1]
 gi|239505794|gb|ACR79281.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Kosmotoga
           olearia TBF 19.5.1]
          Length = 202

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 10/97 (10%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           +      +   F  + T  +PFE       +RG+          E+C+ C  C  +CPA+
Sbjct: 6   IREIKEAISNIFSKRFTTKFPFEVYEPVETYRGKPLF-----NPEKCVGCGACVQVCPAK 60

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           AI +           +     +    CIYCG CQE C
Sbjct: 61  AIDMVDDLVE-----KVRVLTVKYTDCIYCGQCQEKC 92



 Score = 38.5 bits (88), Expect = 0.31,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 14/40 (35%)

Query: 84  PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                      +   +  KC+ CG C + CP  AI    +
Sbjct: 28  EVYEPVETYRGKPLFNPEKCVGCGACVQVCPAKAIDMVDD 67


>gi|169831040|ref|YP_001717022.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Candidatus Desulforudis audaxviator MP104C]
 gi|169637884|gb|ACA59390.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 995

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 30/85 (35%), Gaps = 7/85 (8%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPA---QAITIESGPRC----HDGTRRTVRY 96
             RFR            E C  C  C A+CP     A  +  G R              Y
Sbjct: 90  PGRFRVSLRHSPRGVAAEACKGCGDCAAVCPVEVPDAFNMGFGTRKAIYQPYSQAYPRAY 149

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEG 121
            +D   CI C LC EACP  A+  G
Sbjct: 150 VLDPEHCIECTLCVEACPTGAVTLG 174



 Score = 42.4 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 29/83 (34%), Gaps = 24/83 (28%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            E+C AC  C  +CP     I                 I+ ++C  CG+C   CP  AI 
Sbjct: 921 PEKCAACLGCVRVCPFNVPVIAGN-----------ISWIEPVQCQGCGICVAECPNAAIH 969

Query: 120 EGPNFEFATETRQELYYDKERLL 142
                           Y KE+LL
Sbjct: 970 LIG-------------YRKEQLL 979


>gi|18314097|ref|NP_560764.1| indolepyruvate ferredoxin oxidoreductase alpha subunit part 2,
           authentic frameshift [Pyrobaculum aerophilum str. IM2]
 gi|18161681|gb|AAL64946.1| indolepyruvate ferredoxin oxidoreductase alpha subunit part 2,
           authentic frameshift [Pyrobaculum aerophilum str. IM2]
          Length = 390

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 10/70 (14%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R    L +Y     +C  C LC  +    AI      + H          +D   C+ CG
Sbjct: 314 RAGIQLPKYQVDVNKCTGCGLCYNLLKCSAIYKRPDRKAH----------VDPALCVGCG 363

Query: 108 LCQEACPVDA 117
           +C E CP +A
Sbjct: 364 ICAEVCPFNA 373


>gi|239981284|ref|ZP_04703808.1| putative ferredoxin reductase [Streptomyces albus J1074]
 gi|291453142|ref|ZP_06592532.1| ferredoxin-NADP+ reductase [Streptomyces albus J1074]
 gi|291356091|gb|EFE82993.1| ferredoxin-NADP+ reductase [Streptomyces albus J1074]
          Length = 535

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 3/67 (4%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C     C A+CP   I      R       T    ID   CI CG C +ACPVDAI  
Sbjct: 7   QTCCNDATCVAVCPVNCIHPTPEERA---FGSTEMLHIDPRSCIDCGACADACPVDAIFP 63

Query: 121 GPNFEFA 127
               + A
Sbjct: 64  VDRLKPA 70


>gi|323484489|ref|ZP_08089855.1| hypothetical protein HMPREF9474_01606 [Clostridium symbiosum
           WAL-14163]
 gi|323692550|ref|ZP_08106783.1| 4Fe-4S ferredoxin [Clostridium symbiosum WAL-14673]
 gi|323402267|gb|EGA94599.1| hypothetical protein HMPREF9474_01606 [Clostridium symbiosum
           WAL-14163]
 gi|323503416|gb|EGB19245.1| 4Fe-4S ferredoxin [Clostridium symbiosum WAL-14673]
          Length = 439

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-DIDMIKCIYCGLCQEACPVDA 117
             E CI C  C  +CP  AI +E      +G +   R   +D   C+ CG+C   CPV A
Sbjct: 291 NMETCIGCGKCAKVCPVLAIRMEEENPSGEGEKTGRRKAVVDKDICLGCGVCVRNCPVSA 350

Query: 118 IVE 120
           I  
Sbjct: 351 IRL 353



 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNF---EFATETRQELYYDKE 139
           ++M  CI CG C + CPV AI         E     R++   DK+
Sbjct: 290 VNMETCIGCGKCAKVCPVLAIRMEEENPSGEGEKTGRRKAVVDKD 334


>gi|315925580|ref|ZP_07921790.1| Fe-hydrogenase large subunit family protein [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621121|gb|EFV01092.1| Fe-hydrogenase large subunit family protein [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 493

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 6/66 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112
              +C  C +C   CP  AI     P  +      + YD      ID  KCI CG C  +
Sbjct: 126 DANKCRECGMCATACPYNAIAHLVRPCKNSCPVDALTYDEMGLSVIDEEKCIRCGNCIHS 185

Query: 113 CPVDAI 118
           CP  AI
Sbjct: 186 CPFGAI 191



 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 13/62 (20%)

Query: 61  ERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C  C  K C + C   AI                R  ID  KC  CG+C  ACP +AI
Sbjct: 97  DNCQNCLGKACLSACRFGAIHPGE-----------KRSRIDANKCRECGMCATACPYNAI 145

Query: 119 VE 120
             
Sbjct: 146 AH 147


>gi|302336154|ref|YP_003801361.1| Ferredoxin hydrogenase [Olsenella uli DSM 7084]
 gi|301319994|gb|ADK68481.1| Ferredoxin hydrogenase [Olsenella uli DSM 7084]
          Length = 539

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPR------CHDGTRRTVRYDIDMIKCIYCGLCQ 110
              ++ C+ C +CE  CP  AI     P          G+    R DID  KC+ CG C 
Sbjct: 158 HIDQDLCVQCGMCERTCPYHAIHHHVRPCAAACGMHAIGSDEHGRADIDYEKCVSCGQCL 217

Query: 111 EACPVDAI 118
             CP  AI
Sbjct: 218 VNCPFGAI 225



 Score = 42.0 bits (97), Expect = 0.029,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 5/64 (7%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-----DIDMIKCIYCGLCQEACPVDA 117
           C ACK        Q     + P      ++ + +      ID   C+ CG+C+  CP  A
Sbjct: 119 CNACKDNVYTVTDQCQGCLAHPCREICPKQAISFVDKRAHIDQDLCVQCGMCERTCPYHA 178

Query: 118 IVEG 121
           I   
Sbjct: 179 IHHH 182


>gi|257066555|ref|YP_003152811.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Anaerococcus
           prevotii DSM 20548]
 gi|256798435|gb|ACV29090.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Anaerococcus
           prevotii DSM 20548]
          Length = 1178

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 40/133 (30%), Gaps = 31/133 (23%)

Query: 24  LRYFFKA---------KTTINYPFEKGS----TSPRFRGEHALRRYPNGEERCIACKLCE 70
           +R   K            +   P++ G     TS   +   AL       + CI C  C 
Sbjct: 639 IRNMVKPIINLHEDDLPVSAYLPYDDGQYMAGTSQYEKRGIALFVPEWKIDNCIQCNQCS 698

Query: 71  AICPAQAITI-----ESGPRCHDGTR-----------RTVRYDIDMIKCIYCGLCQEAC- 113
            +CP   I       E+     +G                R  +    C+ CG C + C 
Sbjct: 699 FVCPHATIRPFLLDDEAKANAPEGFETKKAIGKGLEGYEFRIQVSPYDCMGCGNCVDVCP 758

Query: 114 -PVDAIVEGPNFE 125
            P  A+   P  E
Sbjct: 759 APTKALEMKPIDE 771


>gi|218778375|ref|YP_002429693.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Desulfatibacillum alkenivorans AK-01]
 gi|218759759|gb|ACL02225.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Desulfatibacillum alkenivorans AK-01]
          Length = 774

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 33/108 (30%), Gaps = 3/108 (2%)

Query: 19  AFFLCLRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEE--RCIACKLCEAICPA 75
           A  +      K   ++  P  +K   S  +                 C +C  C      
Sbjct: 663 AMAITAIMEGKRPESLEKPQIDKTRVSMGYFNPRVREFEEVNTCAMDCSSCGTCRDCGIC 722

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AI  ++     +   +     +D  KCI CG C  ACP        N
Sbjct: 723 EAICPQAAITRVEEPGKRFEMVVDPEKCIGCGFCAGACPCGIWTLVEN 770


>gi|320101917|ref|YP_004177508.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Isosphaera pallida
           ATCC 43644]
 gi|319749199|gb|ADV60959.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Isosphaera pallida
           ATCC 43644]
          Length = 257

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 27/111 (24%), Positives = 39/111 (35%), Gaps = 17/111 (15%)

Query: 19  AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA-CKLCEAICPAQA 77
              +      +   TI YP        R RG   +        RC + C+ C   CP  A
Sbjct: 1   MLSVLAERLRQKHRTIEYPLAPPVLPDRLRGLPIV-----DASRCPSGCQACAEACPTNA 55

Query: 78  ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
           I ++                ID+ KC++C  C  ACP +AI    +   A 
Sbjct: 56  IRLDPAGPV-----------IDLGKCLFCTECTTACPQEAIAYTTDHRLAV 95


>gi|210634534|ref|ZP_03298151.1| hypothetical protein COLSTE_02073 [Collinsella stercoris DSM 13279]
 gi|210158786|gb|EEA89757.1| hypothetical protein COLSTE_02073 [Collinsella stercoris DSM 13279]
          Length = 1180

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 17/101 (16%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------QAITIESGP----- 84
           FE G+++   RG   +  + +   +CI C  C  +CP          A  + + P     
Sbjct: 676 FELGASAYEKRGVAVMVPHWDE-TKCIQCNQCAYVCPHATIRPFALNADEMAAAPEGLRT 734

Query: 85  ---RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
              +    T       I  + C+ C  C + CP DA+   P
Sbjct: 735 LDVKIPKDTGYKFTMAISPLDCMGCTNCAKVCPKDALTMVP 775


>gi|20807374|ref|NP_622545.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Thermoanaerobacter tengcongensis MB4]
 gi|254478307|ref|ZP_05091687.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Carboxydibrachium pacificum DSM 12653]
 gi|20515893|gb|AAM24149.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Thermoanaerobacter tengcongensis MB4]
 gi|214035772|gb|EEB76466.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Carboxydibrachium pacificum DSM 12653]
          Length = 596

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 15/97 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            LRY F+ +   +   ++           AL  +    E+C AC +C   CP  AI+   
Sbjct: 513 TLRY-FRHEYEAHIKEKRCPAGVCT----ALLSFVIDPEKCKACGICAKNCPVGAISG-- 565

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
                   +    Y ID  KCI CG C + CP  AI 
Sbjct: 566 --------KPKTPYVIDQEKCIKCGTCIDKCPFGAIY 594



 Score = 37.8 bits (86), Expect = 0.51,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 19/44 (43%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            I+            + + ID  KC  CG+C + CPV AI   P
Sbjct: 524 HIKEKRCPAGVCTALLSFVIDPEKCKACGICAKNCPVGAISGKP 567


>gi|262066343|ref|ZP_06025955.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Fusobacterium
           periodonticum ATCC 33693]
 gi|291379907|gb|EFE87425.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Fusobacterium
           periodonticum ATCC 33693]
          Length = 1188

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 39/120 (32%), Gaps = 20/120 (16%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT---IESGPRCHDGTRRTV 94
           FE G+ +   RG        N  ++CI C  C  +CP  AI    I    +       + 
Sbjct: 677 FENGTAAFEKRGVAVDVPIWN-LDKCIQCNQCSYVCPHAAIRSFLITDEEKAASPIEFST 735

Query: 95  -------------RYDIDMIKCIYCGLCQEACPVDAIVEGPN---FEFATETRQELYYDK 138
                        R  +  + C  CG C   CP  A+   P     E   + +    Y K
Sbjct: 736 LKANGKGLENLSYRIQVTPLDCTGCGSCANVCPAKALDMNPIAVALENQEDKKASYIYSK 795


>gi|163796768|ref|ZP_02190726.1| dihydropyrimidine dehydrogenase [alpha proteobacterium BAL199]
 gi|159178022|gb|EDP62569.1| dihydropyrimidine dehydrogenase [alpha proteobacterium BAL199]
          Length = 435

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 6/95 (6%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI C  C       A    S     +      R+++   +C+ 
Sbjct: 329 QYLNLNYVAKARIDQDSCIQCGRCHI-----ACEDTSHQAITNMVDGQRRFEVIDEECVG 383

Query: 106 CGLCQEACPV-DAIVEGPNFEFATETRQELYYDKE 139
           C LC   CPV + I   P    A + R       +
Sbjct: 384 CNLCVNVCPVENCITMVPMAAGAVDPRTGRVVTDD 418


>gi|20093900|ref|NP_613747.1| ferredoxin [Methanopyrus kandleri AV19]
 gi|19886841|gb|AAM01677.1| Ferredoxin [Methanopyrus kandleri AV19]
          Length = 192

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 30/91 (32%), Gaps = 9/91 (9%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E     PRFR            +RCI C  C   CP +                     +
Sbjct: 26  EIMQRPPRFRDFP-----DVDLDRCILCGACADACPVE----GRDGCPPAMEMSEEGPVL 76

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
              +CI CGLC E CP  AI  G   E   E
Sbjct: 77  HKERCIRCGLCVEVCPTGAIEMGTLHEEVEE 107



 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 59  GEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
            +ERCI C LC  +CP  AI +              +  R  +D   C+ CG C+ ACP 
Sbjct: 77  HKERCIRCGLCVEVCPTGAIEMGTLHEEVEERVQPPKPARIVVDSDLCVGCGKCESACPS 136

Query: 116 DAI 118
           DAI
Sbjct: 137 DAI 139



 Score = 39.3 bits (90), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 20/86 (23%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
            E+       R            + C+ C  CE+ CP+ AIT+E                
Sbjct: 106 EERVQPPKPAR-------IVVDSDLCVGCGKCESACPSDAITVEETAEVD---------- 148

Query: 98  IDMIKCIYCGLCQEACPVD-AIVEGP 122
               +C+ C +C E CPV  AI   P
Sbjct: 149 --EERCVLCEVCLEVCPVAGAIKLVP 172



 Score = 34.3 bits (77), Expect = 5.4,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
             S        R     D+D+ +CI CG C +ACPV
Sbjct: 22  HTSREIMQRPPRFRDFPDVDLDRCILCGACADACPV 57


>gi|188584741|ref|YP_001916286.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179349428|gb|ACB83698.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 597

 Score = 53.6 bits (127), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 29/69 (42%), Gaps = 10/69 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L +Y    + CI C  C  +CP  AI+ E                ID  KCI CG C E 
Sbjct: 539 LVKYKIIADNCIGCTACVKVCPVDAISGEKKQAHE----------IDPDKCIGCGECYEK 588

Query: 113 CPVDAIVEG 121
           C  +AI  G
Sbjct: 589 CKFEAITLG 597



 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 8/72 (11%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
            IE G          V+Y I    CI C  C + CPVDAI        + E +Q    D 
Sbjct: 525 HIEKGRCPAGICADLVKYKIIADNCIGCTACVKVCPVDAI--------SGEKKQAHEIDP 576

Query: 139 ERLLNNGDRWES 150
           ++ +  G+ +E 
Sbjct: 577 DKCIGCGECYEK 588


>gi|194466721|ref|ZP_03072708.1| dihydroorotate dehydrogenase family protein [Lactobacillus reuteri
           100-23]
 gi|227543869|ref|ZP_03973918.1| dihydroorotate dehydrogenase family protein [Lactobacillus reuteri
           CF48-3A]
 gi|300909615|ref|ZP_07127076.1| dihydroorotate dehydrogenase [Lactobacillus reuteri SD2112]
 gi|157805448|gb|ABV80266.1| dihydropyrimidine dehydrogenase [Lactobacillus reuteri]
 gi|194453757|gb|EDX42654.1| dihydroorotate dehydrogenase family protein [Lactobacillus reuteri
           100-23]
 gi|227186130|gb|EEI66201.1| dihydroorotate dehydrogenase family protein [Lactobacillus reuteri
           CF48-3A]
 gi|300893480|gb|EFK86839.1| dihydroorotate dehydrogenase [Lactobacillus reuteri SD2112]
          Length = 432

 Score = 53.6 bits (127), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 26/85 (30%), Gaps = 12/85 (14%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI---TIESGPRCHDGTRRTVRY 96
           K          +         ++CI C  C   C   A    T +   R     +     
Sbjct: 323 KNIIPTNQLDRNYKVYPKIDWDKCIGCGRCFISCQDGAHQALTWDDEKRQPVFDK----- 377

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEG 121
                KC+ C LC   CPV AI  G
Sbjct: 378 ----SKCVGCQLCALVCPVGAIKLG 398


>gi|88603408|ref|YP_503586.1| cobyrinic acid a,c-diamide synthase [Methanospirillum hungatei
           JF-1]
 gi|88188870|gb|ABD41867.1| Cobyrinic acid a,c-diamide synthase [Methanospirillum hungatei
           JF-1]
          Length = 289

 Score = 53.6 bits (127), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 18/97 (18%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103
           +  FRG   +       + CI C +C   C   AI            +    Y++   +C
Sbjct: 53  TQEFRG---MDGAVIDTKSCIGCGICAEACVYDAI-----------QKVGEIYEVVPYRC 98

Query: 104 IYCGLCQEACPVDAIVE----GPNFEFATETRQELYY 136
             CG C   CP DA+           +A  +   L Y
Sbjct: 99  EGCGTCTIVCPEDAVSMKSRITGMIHYADTSAGPLLY 135


>gi|41406923|ref|NP_959759.1| FprB [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41395273|gb|AAS03142.1| FprB [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 566

 Score = 53.6 bits (127), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 21/64 (32%), Gaps = 3/64 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + C     C   CP   I          G   +    ID   C+ CG C  ACP
Sbjct: 1   MPHVITQSCCNDGSCVFACPVNCIHPTPDE---PGFATSEMLYIDPAACVDCGACVSACP 57

Query: 115 VDAI 118
           V AI
Sbjct: 58  VGAI 61



 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
              +    C   G C  ACPV+ I   P+ E    T + LY D 
Sbjct: 1   MPHVITQSCCNDGSCVFACPVNCIHPTPD-EPGFATSEMLYIDP 43


>gi|148544533|ref|YP_001271903.1| dihydropyrimidine dehydrogenase [Lactobacillus reuteri DSM 20016]
 gi|184153896|ref|YP_001842237.1| dihydropyrimidine dehydrogenase [Lactobacillus reuteri JCM 1112]
 gi|227363039|ref|ZP_03847176.1| dihydropyrimidine dehydrogenase [Lactobacillus reuteri MM2-3]
 gi|325682854|ref|ZP_08162370.1| dihydroorotate dehydrogenase [Lactobacillus reuteri MM4-1A]
 gi|148531567|gb|ABQ83566.1| dihydroorotate oxidase B, catalytic subunit [Lactobacillus reuteri
           DSM 20016]
 gi|183225240|dbj|BAG25757.1| putative oxidoreductase [Lactobacillus reuteri JCM 1112]
 gi|227071923|gb|EEI10209.1| dihydropyrimidine dehydrogenase [Lactobacillus reuteri MM2-3]
 gi|324977204|gb|EGC14155.1| dihydroorotate dehydrogenase [Lactobacillus reuteri MM4-1A]
          Length = 432

 Score = 53.6 bits (127), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 26/85 (30%), Gaps = 12/85 (14%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI---TIESGPRCHDGTRRTVRY 96
           K          +         ++CI C  C   C   A    T +   R     +     
Sbjct: 323 KNIIPTNQLDRNYKVYPKIDWDKCIGCGRCFISCQDGAHQALTWDDEKRQPVFDK----- 377

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEG 121
                KC+ C LC   CPV AI  G
Sbjct: 378 ----SKCVGCQLCALVCPVGAIKLG 398


>gi|259502930|ref|ZP_05745832.1| dihydroorotate dehydrogenase [Lactobacillus antri DSM 16041]
 gi|259169123|gb|EEW53618.1| dihydroorotate dehydrogenase [Lactobacillus antri DSM 16041]
          Length = 431

 Score = 53.6 bits (127), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 23/82 (28%), Gaps = 6/82 (7%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           K                    ++CI C  C   C   A       +             D
Sbjct: 323 KNIVPTNQLDRDYKVYPKIDWDKCIGCGRCFISCQDGAH------QAMGWDADKRLPTFD 376

Query: 100 MIKCIYCGLCQEACPVDAIVEG 121
             KC+ C LC   CPV AI  G
Sbjct: 377 QSKCVGCQLCALVCPVGAIKLG 398


>gi|294783062|ref|ZP_06748386.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Fusobacterium sp.
           1_1_41FAA]
 gi|294479940|gb|EFG27717.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Fusobacterium sp.
           1_1_41FAA]
          Length = 1188

 Score = 53.6 bits (127), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 27/120 (22%), Positives = 39/120 (32%), Gaps = 20/120 (16%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT---IESGPRCHDGTRRTV 94
           FE G+ +   RG        N  ++CI C  C  +CP  AI    I    +       + 
Sbjct: 677 FENGTAAFEKRGVAVDVPIWN-LDKCIQCNQCSYVCPHAAIRAFLITDEEKVASPIEFST 735

Query: 95  -------------RYDIDMIKCIYCGLCQEACPVDAIVEGPN---FEFATETRQELYYDK 138
                        R  +  + C  CG C   CP  A+   P     E   + +    Y K
Sbjct: 736 LKANGKGLENLSYRIQVTPLDCTGCGSCANVCPAKALDMNPIAVALENQEDKKASYIYSK 795


>gi|326201302|ref|ZP_08191174.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium papyrosolvens DSM 2782]
 gi|325988870|gb|EGD49694.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium papyrosolvens DSM 2782]
          Length = 623

 Score = 53.6 bits (127), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 31/70 (44%), Gaps = 10/70 (14%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            AL      +E+C  C  C  ICP QAI            +    Y I+  KCI CG C 
Sbjct: 563 KALAYIVIEKEKCKGCSKCARICPVQAIEG----------KIKEPYTINQSKCIKCGACL 612

Query: 111 EACPVDAIVE 120
           EACP  AI E
Sbjct: 613 EACPFAAIKE 622



 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 13/40 (32%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +          +      I+  KC  C  C   CPV AI
Sbjct: 551 HVIDKKCKTHTCKALAYIVIEKEKCKGCSKCARICPVQAI 590


>gi|116511282|ref|YP_808498.1| pyruvate:ferredoxin oxidoreductase, fusion of alpha, beta and gamma
           subunit [Lactococcus lactis subsp. cremoris SK11]
 gi|116106936|gb|ABJ72076.1| Pyruvate:ferredoxin oxidoreductase, fusion of alpha, beta and gamma
           subunit [Lactococcus lactis subsp. cremoris SK11]
          Length = 1223

 Score = 53.6 bits (127), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 34/104 (32%), Gaps = 17/104 (16%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
            E   T+   +   AL       + CI C  C  +CP  AI                 + 
Sbjct: 665 DEPLGTTASEKRGIALEIPEWNAQACIQCNECSFVCPHAAIRPFLVDEDEWNQAPEGFHV 724

Query: 98  IDM--------------IKCIYCGLCQEACPV--DAIVEGPNFE 125
           +D                 C  CGLC EACP   +A+   P +E
Sbjct: 725 MDYKGSDGLKYRIQVSVEDCTGCGLCVEACPKKGEALKMIP-YE 767


>gi|144898936|emb|CAM75800.1| Hdr-like menaquinol oxidoreductase subunit [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 650

 Score = 53.6 bits (127), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 4/59 (6%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           C  C  C   CP  A++  +      G      Y     KCI C +C + CP   I  G
Sbjct: 593 CFECDNCVVFCPQTAVSRVAKNERTTGRYVETDY----SKCIGCHICADVCPTGFIQMG 647


>gi|622960|gb|AAA85495.1| pyruvate:ferredoxin oxidoreductase proprotein [Trichomonas
           vaginalis]
          Length = 1157

 Score = 53.6 bits (127), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 31/95 (32%), Gaps = 14/95 (14%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCHDGTRRTVRYDI 98
            A+      E++CI C  C  +CP   I                  +  +      R  I
Sbjct: 670 IAVTVPKWDEKKCIQCNTCAMVCPHAVICPFLLKPEEVQGLTTLKAKGKEIKDYQFRIQI 729

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
             + C  CG C  +CP  A+     +  A    +E
Sbjct: 730 TPLDCTGCGTCVTSCPTKALSMT--YRNAKLDEEE 762


>gi|315186947|gb|EFU20705.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Spirochaeta thermophila DSM 6578]
          Length = 595

 Score = 53.6 bits (127), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 10/68 (14%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             L  Y    ++CI C +C   CP  AI+ E          R   + ID  KCI CG C 
Sbjct: 535 VELVTYTILPDKCIGCGVCARRCPVNAISGE----------RKQPHVIDQDKCIKCGACY 584

Query: 111 EACPVDAI 118
           EAC  +AI
Sbjct: 585 EACKFNAI 592



 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 8/72 (11%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
            I             V Y I   KCI CG+C   CPV+AI        + E +Q    D+
Sbjct: 523 HIVEKRCPTGKCVELVTYTILPDKCIGCGVCARRCPVNAI--------SGERKQPHVIDQ 574

Query: 139 ERLLNNGDRWES 150
           ++ +  G  +E+
Sbjct: 575 DKCIKCGACYEA 586


>gi|73668816|ref|YP_304831.1| formylmethanofuran dehydrogenase subunit F [Methanosarcina barkeri
           str. Fusaro]
 gi|1124960|emb|CAA63629.1| molybdenum formylmethanofuran dehydrogenase subunit fmdF
           [Methanosarcina barkeri]
 gi|72395978|gb|AAZ70251.1| formylmethanofuran dehydrogenase, subunit F [Methanosarcina barkeri
           str. Fusaro]
 gi|1587237|prf||2206350E formylmethanofuran dehydrogenase
          Length = 346

 Score = 53.6 bits (127), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 31/66 (46%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            E C+ C LCE ICP   I +          +   + +ID   C++CG C   CPV+AI 
Sbjct: 106 NESCVHCGLCEDICPQGCIEVTRDISADGKLKLVGKTNIDTECCVHCGWCAAVCPVNAIS 165

Query: 120 EGPNFE 125
               FE
Sbjct: 166 VEKPFE 171



 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 31/87 (35%), Gaps = 4/87 (4%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
               +       +     +     +   E+ C  C  C  +CPA AI  +          
Sbjct: 150 VHCGWCAAVCPVNAISVEKPFEGHWARDEDVCQTCHTCVEVCPANAIFNKKAKPGE---- 205

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAI 118
           R  +       CIYCG C  ACPVDAI
Sbjct: 206 RVEKITHRPDACIYCGACAVACPVDAI 232



 Score = 42.0 bits (97), Expect = 0.028,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM---IKCIYCGLCQEACPV 115
             E C+ C +C   CP  A+ ++   +         R          C++CGLC++ CP 
Sbjct: 62  EREACLVCGICAKACPTGALEMKQEGKTITDKSYLFRAMKPTSVNESCVHCGLCEDICPQ 121

Query: 116 DAIVEGPN 123
             I    +
Sbjct: 122 GCIEVTRD 129



 Score = 41.2 bits (95), Expect = 0.052,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 8/63 (12%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               E C+ C  C A+CP  AI++E              +  D   C  C  C E CP +
Sbjct: 143 NIDTECCVHCGWCAAVCPVNAISVEK--------PFEGHWARDEDVCQTCHTCVEVCPAN 194

Query: 117 AIV 119
           AI 
Sbjct: 195 AIF 197



 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM-IKCIYCGLCQEACPVDAI 118
            E+CI C  C   CP   + I +      G       ++     C+ CG+C +ACP  A+
Sbjct: 22  PEKCIGCGTCVQACPKGNLAIGAVGAITRGLVDADFLEMKEREACLVCGICAKACPTGAL 81

Query: 119 VEGPN 123
                
Sbjct: 82  EMKQE 86



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 17/78 (21%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRR-----------------TVRYDIDM 100
           +  + CI C  C   CP  AI +       D  ++                     + D 
Sbjct: 212 HRPDACIYCGACAVACPVDAIDVRKTAILPDMEKKGVLEKKLLEKPAPETMLRTCLETDE 271

Query: 101 IKCIYCGLCQEACPVDAI 118
             C+ CG C   CPV+A+
Sbjct: 272 AACLGCGNCVIVCPVNAL 289



 Score = 38.5 bits (88), Expect = 0.32,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 28/93 (30%), Gaps = 9/93 (9%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES---------GPRCHDG 89
           EK                   E  C+ C  C  +CP  A++              +   G
Sbjct: 250 EKKLLEKPAPETMLRTCLETDEAACLGCGNCVIVCPVNALSDCELAAGHLNNMDEKALLG 309

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            +      ID  +C   G C   CPVDAI    
Sbjct: 310 VKNGRIKVIDQDRCGADGACAMICPVDAIRLVK 342


>gi|312144646|ref|YP_003996092.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Halanaerobium sp.
           'sapolanicus']
 gi|311905297|gb|ADQ15738.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Halanaerobium sp.
           'sapolanicus']
          Length = 1178

 Score = 53.6 bits (127), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 28/97 (28%), Gaps = 16/97 (16%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPR 85
               S   +   A+      ++ CI C  C   CP                A        
Sbjct: 667 PPGLSKYEKRGIAIDVPDWKDDICIQCNQCALACPHAVIRPFLLDEEEVANAPEGFKTIE 726

Query: 86  CHDGTRRTVRYDID--MIKCIYCGLCQEACPVDAIVE 120
                   + Y I      C  CG+C + CPV+A+  
Sbjct: 727 AKGKQLEGLEYKIQVSPYDCTGCGVCVDVCPVNALEM 763


>gi|262276174|ref|ZP_06053983.1| iron-sulfur cluster-binding protein [Grimontia hollisae CIP 101886]
 gi|262219982|gb|EEY71298.1| iron-sulfur cluster-binding protein [Grimontia hollisae CIP 101886]
          Length = 570

 Score = 53.6 bits (127), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 19/102 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             C  C  C A+CP  A++         G+R  + +      C+ CGLC+ +CP   I  
Sbjct: 436 HDCTLCMGCVAVCPTGALS-------SIGSRPGITFR--EQDCVQCGLCESSCPESVITL 486

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPY 162
            P F + +E RQ+    +E L      +E E    I    P+
Sbjct: 487 EPRFNWNSEQRQQ----REIL------YEEEAAACITCGKPF 518



 Score = 35.1 bits (79), Expect = 3.2,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 11/53 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C   CPA+A++  +               I+   C   G C   CP +AI
Sbjct: 211 CTRCIDACPAEALSTIN-----------QTITINPYLCQGIGSCATVCPTEAI 252


>gi|225572042|ref|ZP_03780906.1| hypothetical protein RUMHYD_00336 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040477|gb|EEG50723.1| hypothetical protein RUMHYD_00336 [Blautia hydrogenotrophica DSM
           10507]
          Length = 501

 Score = 53.6 bits (127), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 7/85 (8%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGL 108
                + +CI C  C+++CP  AI+ ++ P             +  R  I   KC+ CG+
Sbjct: 144 YSHIDQTKCIKCGKCKSVCPYDAISHKTRPCERACGVNAITSDQQGRATILNDKCVSCGM 203

Query: 109 CQEACPVDAI-VEGPNFEFATETRQ 132
           C  +CP  AI  +   F+ A   R+
Sbjct: 204 CMVSCPFGAISDKSQIFQLAHALRE 228



 Score = 40.5 bits (93), Expect = 0.088,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 25/66 (37%), Gaps = 13/66 (19%)

Query: 57  PNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 C  C    C  ICP  AI++  G              ID  KCI CG C+  CP
Sbjct: 115 YEVSNICKGCVAHPCMLICPKGAISMVDGYSH-----------IDQTKCIKCGKCKSVCP 163

Query: 115 VDAIVE 120
            DAI  
Sbjct: 164 YDAISH 169


>gi|123476296|ref|XP_001321321.1| pyruvate:ferredoxin oxidoreductase BI [Trichomonas vaginalis G3]
 gi|121904145|gb|EAY09098.1| pyruvate:ferredoxin oxidoreductase BI [Trichomonas vaginalis G3]
          Length = 1157

 Score = 53.6 bits (127), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 31/95 (32%), Gaps = 14/95 (14%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCHDGTRRTVRYDI 98
            A+      E++CI C  C  +CP   I                  +  +      R  I
Sbjct: 670 IAVTVPKWDEKKCIQCNTCAMVCPHAVICPFLLKPEEVQGLTTLKAKGKEIKDYQFRIQI 729

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
             + C  CG C  +CP  A+     +  A    +E
Sbjct: 730 TPLDCTGCGTCVTSCPTKALSMT--YRNAKLDEEE 762


>gi|311696283|gb|ADP99156.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [marine bacterium HP15]
          Length = 1199

 Score = 53.6 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 34/122 (27%), Gaps = 27/122 (22%)

Query: 29  KAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAICPA----------- 75
           K   +   P     T  S   +   AL       + C+ C  C  ICP            
Sbjct: 658 KLPVSAFPPDGTWPTGTSQYEKRTIALEIPIWESDLCVQCNFCAMICPHTAITSKVFEPE 717

Query: 76  ------QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV--------DAIVEG 121
                 +A  +    +  +      R  +    C  CGLC E CP          AI   
Sbjct: 718 SVKGAPEAFEVVPETQTSELEGLDYRIQVAPDDCTGCGLCVEVCPAKDRTQPKRKAINMQ 777

Query: 122 PN 123
           P 
Sbjct: 778 PI 779


>gi|15643163|ref|NP_228207.1| glutamate synthase, alpha subunit [Thermotoga maritima MSB8]
 gi|148269661|ref|YP_001244121.1| glutamate synthase (NADPH) [Thermotoga petrophila RKU-1]
 gi|170288336|ref|YP_001738574.1| glutamate synthase (NADPH) [Thermotoga sp. RQ2]
 gi|281411629|ref|YP_003345708.1| glutamate synthase (NADPH) [Thermotoga naphthophila RKU-10]
 gi|4980901|gb|AAD35482.1|AE001719_8 glutamate synthase, alpha subunit [Thermotoga maritima MSB8]
 gi|147735205|gb|ABQ46545.1| glutamate synthase (NADPH) GltB2 subunit [Thermotoga petrophila
           RKU-1]
 gi|170175839|gb|ACB08891.1| Glutamate synthase (NADPH) [Thermotoga sp. RQ2]
 gi|281372732|gb|ADA66294.1| Glutamate synthase (NADPH) [Thermotoga naphthophila RKU-10]
          Length = 507

 Score = 53.6 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 31/100 (31%), Gaps = 20/100 (20%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           K    P F            + +CI C  C  +C   A   +                  
Sbjct: 3   KRKVPPEFV-------VERDDYKCIRCLACVRVCSYGANFYDENANRVYTEN-------- 47

Query: 100 MIKCIYCGLCQEACPVDAIVEGPN-FE---FATETRQELY 135
             KC+ C  C+  CP +AI    N F+    A  T + L 
Sbjct: 48  -TKCVGCHFCEAICPTEAITVRKNDFDIRPLAHWTPEHLI 86


>gi|313114957|ref|ZP_07800452.1| 4Fe-4S binding domain protein [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310622717|gb|EFQ06177.1| 4Fe-4S binding domain protein [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 516

 Score = 53.6 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 8/86 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112
            +++CI C  C  +CP  AI     P         +  D      ID  KC+ CG C   
Sbjct: 152 DQDKCIKCGRCVGVCPYNAIVKTERPCAAACGMGAIHSDELGRAEIDYSKCVSCGQCLVN 211

Query: 113 CPVDAI-VEGPNFEF-ATETRQELYY 136
           CP  AI  +G  ++      R +  Y
Sbjct: 212 CPFGAIADKGQIYQLIQGFNRGDRIY 237



 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 12/85 (14%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P          R    L +  +  + C+A   C  +CP +AIT ESG           R 
Sbjct: 102 PLVNVIKFACNRCPEKLVKVSDLCQGCLA-HPCMEVCPKKAITWESG-----------RS 149

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEG 121
            ID  KCI CG C   CP +AIV+ 
Sbjct: 150 IIDQDKCIKCGRCVGVCPYNAIVKT 174


>gi|296132262|ref|YP_003639509.1| NADH dehydrogenase (quinone) [Thermincola sp. JR]
 gi|296030840|gb|ADG81608.1| NADH dehydrogenase (quinone) [Thermincola potens JR]
          Length = 619

 Score = 53.6 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 10/70 (14%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           AL  Y    ++C  C  C+ +CP  AI+ E                ID  KCI CG C E
Sbjct: 560 ALLEYKIDPDKCKGCGACKKVCPVGAISGEKKEAHE----------IDAGKCIKCGSCIE 609

Query: 112 ACPVDAIVEG 121
            C  DAI++G
Sbjct: 610 KCKFDAIIKG 619



 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 18/40 (45%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            I +           + Y ID  KC  CG C++ CPV AI
Sbjct: 547 HIHNKKCTAGVCTALLEYKIDPDKCKGCGACKKVCPVGAI 586


>gi|325265417|ref|ZP_08132141.1| Fe-hydrogenase large subunit family protein [Clostridium sp. D5]
 gi|324029418|gb|EGB90709.1| Fe-hydrogenase large subunit family protein [Clostridium sp. D5]
          Length = 503

 Score = 53.6 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQ 110
              +E+CI C  C+++CP  AI  +  P  +       G+ +  R  ID  KC+ CG+C 
Sbjct: 148 FIDQEKCIKCGKCKSVCPYDAIAKKERPCKNACGVSAIGSDKYGRAFIDPEKCVSCGMCM 207

Query: 111 EACPVDAI 118
            +CP  AI
Sbjct: 208 VSCPFGAI 215



 Score = 41.2 bits (95), Expect = 0.046,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 13/64 (20%)

Query: 57  PNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 C  C    C+ +CP  AI+  +G              ID  KCI CG C+  CP
Sbjct: 117 YEVSNICKGCLAHPCQEVCPKGAISFVNGKSF-----------IDQEKCIKCGKCKSVCP 165

Query: 115 VDAI 118
            DAI
Sbjct: 166 YDAI 169


>gi|260892290|ref|YP_003238387.1| glutamate synthase alpha subunit domain protein [Ammonifex degensii
           KC4]
 gi|260864431|gb|ACX51537.1| glutamate synthase alpha subunit domain protein [Ammonifex degensii
           KC4]
          Length = 635

 Score = 53.6 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 28/64 (43%), Gaps = 7/64 (10%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C  C +C  ICP QAIT               RY+ D  +CI CG C +ACP       P
Sbjct: 578 CRDCGICLNICPQQAITRHQEGNG-------WRYEADPQRCIGCGFCADACPCGVWELRP 630

Query: 123 NFEF 126
           N E 
Sbjct: 631 NQEP 634


>gi|257053166|ref|YP_003130999.1| NADH dehydrogenase (quinone) [Halorhabdus utahensis DSM 12940]
 gi|256691929|gb|ACV12266.1| NADH dehydrogenase (quinone) [Halorhabdus utahensis DSM 12940]
          Length = 634

 Score = 53.6 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 32/84 (38%), Gaps = 11/84 (13%)

Query: 38  FEKGSTSPRFRGEHALR-RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
            E+        G       Y    E CI C+ C   CP  AI+ E G            +
Sbjct: 559 DEECPAGDCELGSGEHAGTYKIIAEDCIGCQQCVDACPIDAISGEPGE----------VH 608

Query: 97  DIDMIKCIYCGLCQEACPVDAIVE 120
           +ID   C+ CG C + CPVD I  
Sbjct: 609 EIDPAACVGCGQCVDPCPVDTIEL 632



 Score = 38.9 bits (89), Expect = 0.21,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 15/27 (55%)

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGP 122
           Y I    CI C  C +ACP+DAI   P
Sbjct: 578 YKIIAEDCIGCQQCVDACPIDAISGEP 604


>gi|255690239|ref|ZP_05413914.1| Fe-hydrogenase large subunit family protein [Bacteroides finegoldii
           DSM 17565]
 gi|260624258|gb|EEX47129.1| Fe-hydrogenase large subunit family protein [Bacteroides finegoldii
           DSM 17565]
          Length = 489

 Score = 53.6 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 6/68 (8%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQEA 112
             + C++C +C   CP  AI     P       +           ID  KCIYCG C  A
Sbjct: 148 DHDTCVSCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDESKCIYCGKCLNA 207

Query: 113 CPVDAIVE 120
           CP  AI E
Sbjct: 208 CPFGAIFE 215



 Score = 39.3 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 12/97 (12%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------------ITIESGPR 85
            E    S   R   +          C+  + C +                      + P+
Sbjct: 75  DEVAPLSDYARMALSRPEPNKENIMCVIDEACSSCVQINYEITNLCRGCVARSCYMNCPK 134

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                ++  +  ID   C+ CG+C ++CP  AIV  P
Sbjct: 135 DAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAIVYIP 171


>gi|160942972|ref|ZP_02090210.1| hypothetical protein FAEPRAM212_00449 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445666|gb|EDP22669.1| hypothetical protein FAEPRAM212_00449 [Faecalibacterium prausnitzii
           M21/2]
          Length = 538

 Score = 53.6 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 8/86 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112
            +++CI C  C  +CP  AI     P         +  D      ID  KC+ CG C   
Sbjct: 173 DQDKCIKCGRCVTVCPYNAIVKTERPCAAACGMGAIHSDELGRAEIDYSKCVSCGQCLVN 232

Query: 113 CPVDAI-VEGPNFEF-ATETRQELYY 136
           CP  AI  +G  ++      R +  Y
Sbjct: 233 CPFGAIADKGQIYQLIQGFNRGDRIY 258



 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 12/85 (14%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P          R    L +  +  + C+A   C  +CP +AIT ESG           R 
Sbjct: 123 PLVNVIKFACNRCPEKLVKVSDLCQGCLA-HPCMEVCPKKAITWESG-----------RS 170

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEG 121
            ID  KCI CG C   CP +AIV+ 
Sbjct: 171 TIDQDKCIKCGRCVTVCPYNAIVKT 195


>gi|18313615|ref|NP_560282.1| polyferredoxin [Pyrobaculum aerophilum str. IM2]
 gi|18161161|gb|AAL64464.1| polyferredoxin [Pyrobaculum aerophilum str. IM2]
          Length = 370

 Score = 53.6 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 32/125 (25%), Positives = 43/125 (34%), Gaps = 19/125 (15%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPN----GEERCIACKLCEAICPAQAITIESGPRCH 87
            T   P E    + R        R  +     + +CI C LC   CPA AI         
Sbjct: 52  WTPLPPAEAREATRRDFLTGGFIRLRDTVVIDQSKCIWCGLCADYCPASAIEYVERKNVK 111

Query: 88  DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE-----GPNFEFATETRQELYYDKERLL 142
                     +    CI CGLC   CPVDA+       G   +    +RQ L +  +   
Sbjct: 112 ----------VKYESCIDCGLCNSVCPVDAVKMPSLPDGYIADLVKTSRQPLKFICDYAF 161

Query: 143 NNGDR 147
            +GD 
Sbjct: 162 EDGDE 166



 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 18/52 (34%), Gaps = 11/52 (21%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           C  C  C   CP  A+++                 +    CI CG+C   CP
Sbjct: 259 CTLCGACVNACPTDALSVRGYE-----------LRLVPALCIACGVCVAKCP 299


>gi|325845863|ref|ZP_08169061.1| protein HymB [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481769|gb|EGC84801.1| protein HymB [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 526

 Score = 53.6 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 10/60 (16%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E+CI C  C+ +CP  AI+ E          +  R++ID  KCI CG C E CP++AI  
Sbjct: 476 EKCIGCGKCKMLCPVGAISGE----------KRNRHEIDHDKCIKCGQCMENCPIEAIAL 525



 Score = 38.9 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 9/76 (11%)

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134
            QA   E+        R  + Y I   KCI CG C+  CPV AI        + E R   
Sbjct: 451 YQAHVGENKTCPAKRCRSLLSYLIG-EKCIGCGKCKMLCPVGAI--------SGEKRNRH 501

Query: 135 YYDKERLLNNGDRWES 150
             D ++ +  G   E+
Sbjct: 502 EIDHDKCIKCGQCMEN 517


>gi|89897634|ref|YP_521121.1| pyruvate ferredoxin oxidoreductase [Desulfitobacterium hafniense
           Y51]
 gi|219670762|ref|YP_002461197.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|89337082|dbj|BAE86677.1| pyruvate ferredoxin oxidoreductase [Desulfitobacterium hafniense
           Y51]
 gi|219541022|gb|ACL22761.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 1174

 Score = 53.6 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 45/137 (32%), Gaps = 34/137 (24%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG           ++CI C  C  +CP               QA       +  +     
Sbjct: 675 RGIAVYVPEWQ-IDKCIQCNQCAYVCPHATIRSFLLDDQESAQAPDTFKTKKPINKKLEG 733

Query: 94  VRYDID--MIKCIYCGLCQEACPVD--AIVEGP----------NFEFATETRQELYYDKE 139
             Y I    + C  CG C + CP    A+V  P          N+EFA         +K 
Sbjct: 734 YHYRIQVSPLDCTGCGNCADICPAPGKALVMEPADHEIEMEAENWEFAMT-----VTEKR 788

Query: 140 RLLNNGDRWESEIVRNI 156
            LL+    + S++ R +
Sbjct: 789 DLLDVKTLFGSQLARPL 805


>gi|294495923|ref|YP_003542416.1| formylmethanofuran dehydrogenase, subunit F [Methanohalophilus
           mahii DSM 5219]
 gi|292666922|gb|ADE36771.1| formylmethanofuran dehydrogenase, subunit F [Methanohalophilus
           mahii DSM 5219]
          Length = 341

 Score = 53.6 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 35/74 (47%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            + C+ C LCE +CP   I ++      +  +   +  ID   C++CG C+  CPVDAI 
Sbjct: 101 NDDCVHCGLCEQVCPQGCIEVDQWLSNDNAAKVDGQTTIDQECCVHCGWCESVCPVDAIE 160

Query: 120 EGPNFEFATETRQE 133
               FE      ++
Sbjct: 161 VEKPFEGTWFRDED 174



 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 28/64 (43%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            E+CI C  C  +CP + + I S      G       +I    CI CG+C + CP  A+ 
Sbjct: 18  PEKCIGCGTCVMVCPKETLVIGSVGPVARGLIDKEFLEIRPNTCITCGMCSKVCPTGALE 77

Query: 120 EGPN 123
              +
Sbjct: 78  MRED 81



 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 3/79 (3%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR---TVRYDID 99
             P  RG             CI C +C  +CP  A+ +    +  +        ++    
Sbjct: 41  VGPVARGLIDKEFLEIRPNTCITCGMCSKVCPTGALEMREDGKPVEEKTYLINAIKPTTV 100

Query: 100 MIKCIYCGLCQEACPVDAI 118
              C++CGLC++ CP   I
Sbjct: 101 NDDCVHCGLCEQVCPQGCI 119



 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 5/110 (4%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
               +             +     +   E+ C AC+ C  +CP  A+            +
Sbjct: 145 VHCGWCESVCPVDAIEVEKPFEGTWFRDEDVCQACRTCVDVCPCNALFNPDWEAGERVDK 204

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERL 141
              R       CIYCG C  +CPV AI        A E  ++  ++K+ L
Sbjct: 205 VAQR----PDACIYCGACAVSCPVQAIDVRKT-AIAAEMEKKKVFEKKLL 249



 Score = 38.9 bits (89), Expect = 0.24,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 26/92 (28%), Gaps = 9/92 (9%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES---------GPRCHD 88
           FEK              +    E  C+ C  C  +CP  A   +            +   
Sbjct: 244 FEKKLLDKPSVKPTLTSKLVTDEYDCLGCGNCVIVCPVNAYANKELAAGHLNNMDEKALL 303

Query: 89  GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
                    +D   C  CG C   CP +AI  
Sbjct: 304 EVENGAVNVVDQDVCGSCGACAMICPTNAIWL 335



 Score = 38.5 bits (88), Expect = 0.29,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 17/75 (22%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK----------------- 102
            + CI C  C   CP QAI +       +  ++ V     + K                 
Sbjct: 209 PDACIYCGACAVSCPVQAIDVRKTAIAAEMEKKKVFEKKLLDKPSVKPTLTSKLVTDEYD 268

Query: 103 CIYCGLCQEACPVDA 117
           C+ CG C   CPV+A
Sbjct: 269 CLGCGNCVIVCPVNA 283


>gi|212696952|ref|ZP_03305080.1| hypothetical protein ANHYDRO_01515 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676040|gb|EEB35647.1| hypothetical protein ANHYDRO_01515 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 526

 Score = 53.6 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 10/60 (16%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E+CI C  C+ +CP  AI+ E          +  R++ID  KCI CG C E CP++AI  
Sbjct: 476 EKCIGCGKCKMLCPVGAISGE----------KRNRHEIDHDKCIKCGQCMENCPIEAIAL 525



 Score = 38.9 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 9/76 (11%)

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134
            QA   E+        R  + Y I   KCI CG C+  CPV AI        + E R   
Sbjct: 451 YQAHVGENKTCPAKRCRSLLSYLIG-EKCIGCGKCKMLCPVGAI--------SGEKRNRH 501

Query: 135 YYDKERLLNNGDRWES 150
             D ++ +  G   E+
Sbjct: 502 EIDHDKCIKCGQCMEN 517


>gi|182419411|ref|ZP_02950663.1| iron-dependent hydrogenase [Clostridium butyricum 5521]
 gi|237666562|ref|ZP_04526547.1| ferredoxin hydrogenase [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182376742|gb|EDT74314.1| iron-dependent hydrogenase [Clostridium butyricum 5521]
 gi|237657761|gb|EEP55316.1| ferredoxin hydrogenase [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 495

 Score = 53.6 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 7/69 (10%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIKCIYCGLC 109
                +C  C +C+  CP  AI  +  P             +  +  +I   KCI CG C
Sbjct: 135 HIDTTKCKECGMCKKACPYDAIAQDMRPCKRACPTGAINFNKYDLSTEITESKCINCGAC 194

Query: 110 QEACPVDAI 118
             +CP  AI
Sbjct: 195 MASCPFGAI 203



 Score = 38.5 bits (88), Expect = 0.29,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 13/58 (22%)

Query: 63  CIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C    C+++C   AI+  +G              ID  KC  CG+C++ACP DAI
Sbjct: 110 CRNCIAHKCQSVCNFGAISYVNGRAH-----------IDTTKCKECGMCKKACPYDAI 156


>gi|206901606|ref|YP_002250206.1| dihydroorotate dehydrogenase superfamily [Dictyoglomus thermophilum
           H-6-12]
 gi|206740709|gb|ACI19767.1| dihydroorotate dehydrogenase superfamily [Dictyoglomus thermophilum
           H-6-12]
          Length = 390

 Score = 53.6 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 12/68 (17%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L       + C +C +C+ +C   A   + G              I    C  CGLC + 
Sbjct: 324 LYEAYINPDLCTSCGICKKVCIYDAPVEKEGK------------YIITDLCDGCGLCVKL 371

Query: 113 CPVDAIVE 120
           CPV AI  
Sbjct: 372 CPVRAISM 379


>gi|309389693|gb|ADO77573.1| cobyrinic acid ac-diamide synthase [Halanaerobium praevalens DSM
           2228]
          Length = 288

 Score = 53.6 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 25/109 (22%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE-- 120
           CI C  C   C   AIT+               +++  +KC  CG+C E CP  A+    
Sbjct: 68  CIDCGKCYDHCRYNAITVND-------------FEVKKLKCEGCGVCVEVCPTKALKLEA 114

Query: 121 --GPNFEFATETRQELYY--------DKERLLNNGDRWESEIVRNIVTD 159
               N   A     ++ +           +L++   +  +EI +    D
Sbjct: 115 VATGNIYQAESQFGDMVHARLFPGADTSGKLVSEVKKKTAEIAKKKEKD 163


>gi|294102249|ref|YP_003554107.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Aminobacterium colombiense DSM 12261]
 gi|293617229|gb|ADE57383.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Aminobacterium colombiense DSM 12261]
          Length = 220

 Score = 53.6 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 9/92 (9%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103
            P     +   R    +ERCI CKLC  +CPA AI      +         +  I + +C
Sbjct: 47  PPIEPQGYFRGRLDYDKERCIGCKLCIRVCPANAIEFLEEEK---------KIQIHVDRC 97

Query: 104 IYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            +C  C E CPV  +     +  ++  R+   
Sbjct: 98  CFCAQCTEICPVKCLSMSKEYLISSYDRKAQI 129



 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 10/66 (15%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
            +Y   EE+CI C  C   CP  AI+ E              + ID  KC+ CG C E C
Sbjct: 149 VKYEVDEEKCIGCTKCARNCPVNAISGELKKP----------HVIDKEKCVGCGKCAELC 198

Query: 114 PVDAIV 119
           P DAI 
Sbjct: 199 PKDAIH 204



 Score = 33.9 bits (76), Expect = 6.8,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 15/38 (39%)

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            P          R D D  +CI C LC   CP +AI  
Sbjct: 46  NPPIEPQGYFRGRLDYDKERCIGCKLCIRVCPANAIEF 83


>gi|302875667|ref|YP_003844300.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Clostridium
           cellulovorans 743B]
 gi|307688105|ref|ZP_07630551.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Clostridium
           cellulovorans 743B]
 gi|302578524|gb|ADL52536.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Clostridium
           cellulovorans 743B]
          Length = 1179

 Score = 53.6 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 27/93 (29%), Gaps = 19/93 (20%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQ----------------AITIESGPRCHDGTR 91
           RG   +       ++CI C  C  +CP                  A              
Sbjct: 675 RGIAVMLPQWQ-IDKCIQCGQCAFVCPHATIRQFVLDKGEQEKAPATFATKKATGRGLEE 733

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVD--AIVEGP 122
              R  I  + C  CG C + CP    AI+  P
Sbjct: 734 YQYRIQIAPMDCTGCGNCADVCPAPGKAIIMQP 766


>gi|238021504|ref|ZP_04601930.1| hypothetical protein GCWU000324_01404 [Kingella oralis ATCC 51147]
 gi|237868484|gb|EEP69490.1| hypothetical protein GCWU000324_01404 [Kingella oralis ATCC 51147]
          Length = 324

 Score = 53.6 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 24/66 (36%), Gaps = 10/66 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C  C   CP  AI   S             + +   +C  CGLC   CPVD
Sbjct: 73  WIDEAVCIGCTACIRACPVDAIMGASKQ----------MHTVLADECTGCGLCVAPCPVD 122

Query: 117 AIVEGP 122
            I   P
Sbjct: 123 CIYMRP 128


>gi|295103488|emb|CBL01032.1| Iron only hydrogenase large subunit, C-terminal domain
           [Faecalibacterium prausnitzii SL3/3]
          Length = 517

 Score = 53.6 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 8/86 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112
            +++CI C  C  +CP  AI     P         +  D      ID  KC+ CG C   
Sbjct: 152 DQDKCIKCGRCVTVCPYNAIVKTERPCAAACGMGAIHSDELGRAEIDYSKCVSCGQCLVN 211

Query: 113 CPVDAI-VEGPNFEF-ATETRQELYY 136
           CP  AI  +G  ++      R +  Y
Sbjct: 212 CPFGAIADKGQIYQLIQGFNRGDRIY 237



 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 12/85 (14%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P          R    L +  +  + C+A   C  +CP +AIT ESG           R 
Sbjct: 102 PLVNVIKFACNRCPEKLVKVSDLCQGCLA-HPCMEVCPKKAITWESG-----------RS 149

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEG 121
            ID  KCI CG C   CP +AIV+ 
Sbjct: 150 TIDQDKCIKCGRCVTVCPYNAIVKT 174


>gi|156743974|ref|YP_001434103.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing
           protein [Roseiflexus castenholzii DSM 13941]
 gi|156235302|gb|ABU60085.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Roseiflexus castenholzii DSM 13941]
          Length = 1192

 Score = 53.6 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 29/104 (27%), Gaps = 24/104 (23%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE----------------SGPRCHDG 89
             +   AL       + CI C  C  +CP   I  +                S  R  + 
Sbjct: 673 WEKRTIALEVPIWEPDICIQCGKCAYVCPHAVIRTKVYEPALLEGAPETFLSSEARFKEF 732

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPV--------DAIVEGPNFE 125
                   I    C  CGLC E CP          AI   P  E
Sbjct: 733 PGYKYTLAISPEDCTGCGLCVEVCPAKDKRQVGRKAINMKPLVE 776


>gi|238924739|ref|YP_002938255.1| ferredoxin hydrogenase [Eubacterium rectale ATCC 33656]
 gi|238876414|gb|ACR76121.1| ferredoxin hydrogenase [Eubacterium rectale ATCC 33656]
 gi|291526109|emb|CBK91696.1| Iron only hydrogenase large subunit, C-terminal domain [Eubacterium
           rectale DSM 17629]
          Length = 485

 Score = 53.6 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 26/68 (38%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110
               ++C  C  C   CP  AI     P         + Y+      ID  KCI CG C 
Sbjct: 124 HIDPQKCKECGRCAQACPYNAIAHLKRPCKFSCPVNAITYNEYGISVIDESKCIRCGKCI 183

Query: 111 EACPVDAI 118
            +CP  AI
Sbjct: 184 HSCPFGAI 191


>gi|206900762|ref|YP_002250635.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit
           [Dictyoglomus thermophilum H-6-12]
 gi|206739865|gb|ACI18923.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit
           [Dictyoglomus thermophilum H-6-12]
          Length = 596

 Score = 53.6 bits (127), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 35/97 (36%), Gaps = 15/97 (15%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
             L+Y F+ +   +   +K           AL  Y    E C  C +C   CP  AI  +
Sbjct: 512 TTLKY-FRDEYLAHIRDKKCPAKVCT----ALIHYEVIREECRKCSICFRNCPVGAIYKD 566

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                         Y ID  KC  CG+C + CP   I
Sbjct: 567 EDG----------TYVIDQSKCTKCGICFQVCPFKVI 593


>gi|291527156|emb|CBK92742.1| Iron only hydrogenase large subunit, C-terminal domain [Eubacterium
           rectale M104/1]
          Length = 485

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 26/68 (38%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110
               ++C  C  C   CP  AI     P         + Y+      ID  KCI CG C 
Sbjct: 124 HIDPQKCKECGRCAQACPYNAIAHLKRPCKFSCPVNAITYNEYGISVIDESKCIRCGKCI 183

Query: 111 EACPVDAI 118
            +CP  AI
Sbjct: 184 HSCPFGAI 191


>gi|20094920|ref|NP_614767.1| flavoprotein [Methanopyrus kandleri AV19]
 gi|19888159|gb|AAM02697.1| Archaea-specific flavoprotein [Methanopyrus kandleri AV19]
          Length = 246

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 11/74 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +  Y    ERC  C +C   CP  AI +  G              I +++C+ CG C EA
Sbjct: 140 ITPYMVLRERCEGCGICVDACPRSAIDMVDGKAF-----------IRLLRCVGCGKCAEA 188

Query: 113 CPVDAIVEGPNFEF 126
           CP DAI  G  +E 
Sbjct: 189 CPEDAIHGGLEYEM 202



 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 16/44 (36%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            +          R    Y +   +C  CG+C +ACP  AI    
Sbjct: 126 WVVPCDYEEGKIRTITPYMVLRERCEGCGICVDACPRSAIDMVD 169


>gi|312113374|ref|YP_004010970.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Rhodomicrobium vannielii ATCC 17100]
 gi|311218503|gb|ADP69871.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Rhodomicrobium vannielii ATCC 17100]
          Length = 651

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 4/59 (6%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           C  C  C   CP +AI          G   T  Y     KC+ C +CQ+ CP   I  G
Sbjct: 594 CFECDACLIFCPQKAIDRVPKKERAIGRYVTTDYK----KCVGCHICQDVCPTGYIQMG 648


>gi|255994291|ref|ZP_05427426.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Eubacterium
           saphenum ATCC 49989]
 gi|255993004|gb|EEU03093.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Eubacterium
           saphenum ATCC 49989]
          Length = 1189

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/140 (20%), Positives = 43/140 (30%), Gaps = 31/140 (22%)

Query: 27  FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA--------- 77
            FK +    +P   G+T    RG           E CI C  C  +CP            
Sbjct: 668 LFKDRADGEFP--TGTTQYEKRGVAVNVPTWR-SETCIQCNQCAFVCPHACIRPVLVDAD 724

Query: 78  -------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV--DAIVEGP------ 122
                         +         R  +  + C+ CG C   CP    ++V  P      
Sbjct: 725 EKAKAPSQFKTEAAKGKGFEGLEFRMQVSPLDCLGCGSCANVCPTKEKSLVMTPLADNMD 784

Query: 123 ---NFEFATETRQ-ELYYDK 138
              N+E+A E  + +   +K
Sbjct: 785 EKENWEYAMEIPEKDNIMEK 804


>gi|125623314|ref|YP_001031797.1| NifJ protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|124492122|emb|CAL97051.1| NifJ protein [Lactococcus lactis subsp. cremoris MG1363]
 gi|300070063|gb|ADJ59463.1| NifJ protein [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 1223

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 34/104 (32%), Gaps = 17/104 (16%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
            E   T+   +   AL       + CI C  C  +CP  AI                 + 
Sbjct: 665 DEPLGTTVSEKRGIALEVPEWNAQACIQCNECSFVCPHAAIRPFLVDEDEWNQAPEGFHV 724

Query: 98  IDM--------------IKCIYCGLCQEACPV--DAIVEGPNFE 125
           +D                 C  CGLC EACP   +A+   P +E
Sbjct: 725 MDYKGSDGLKYRIQVSVEDCTGCGLCVEACPKKGEALKMIP-YE 767


>gi|114567049|ref|YP_754203.1| MinD family protein [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114337984|gb|ABI68832.1| MinD superfamily P-loop ATPase containing an inserted ferredoxin
           domain [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 288

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 19/85 (22%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              EE CI+C LC  +C   AI+ E              Y +  + C  CG C++ CPV+
Sbjct: 62  HIDEESCISCGLCMELCRFDAISSE--------------YQVLPLFCEGCGFCEKICPVE 107

Query: 117 AIVE-----GPNFEFATETRQELYY 136
           AI       G  FE     +++  +
Sbjct: 108 AIAMQARSSGHCFEGVFNQKKQNLF 132


>gi|312140996|ref|YP_004008332.1| ferredoxin domain oxidoreductase [Rhodococcus equi 103S]
 gi|311890335|emb|CBH49653.1| ferredoxin domain oxidoreductase [Rhodococcus equi 103S]
          Length = 578

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 3/66 (4%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                  + C     C + CP   I              T    I+   CI CG C +AC
Sbjct: 14  NMAYVITQTCCNDASCVSACPVNCIHPTPEEAE---FATTEMLYIEPQACIDCGACVDAC 70

Query: 114 PVDAIV 119
           PV+AI 
Sbjct: 71  PVNAIF 76


>gi|114320439|ref|YP_742122.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114226833|gb|ABI56632.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 566

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 46/121 (38%), Gaps = 17/121 (14%)

Query: 20  FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79
             L L + F+       P  + + +P       L       + C  C  C  +CP+ A+T
Sbjct: 394 LGLALDHLFRN---APAPAREVALAPGAPFGEVLV----NTDACTLCMACAQVCPSSALT 446

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF-ATETRQELYYDK 138
                        +V+       C+ CGLCQ ACP +A+   P   +   E RQ    ++
Sbjct: 447 DNPE---------SVQLRFIEDNCVQCGLCQTACPEEAVSLRPRLLYDGPERRQARVLNE 497

Query: 139 E 139
           E
Sbjct: 498 E 498


>gi|302391064|ref|YP_003826884.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Acetohalobium arabaticum DSM 5501]
 gi|302203141|gb|ADL11819.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Acetohalobium arabaticum DSM 5501]
          Length = 600

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 29/63 (46%), Gaps = 10/63 (15%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           Y   EE CI C  C  +CP  AI  E              + ID  +CI CG C + CPV
Sbjct: 545 YVIDEEDCIGCTSCVDVCPVDAIEGEKKEA----------HVIDTDECINCGSCVDECPV 594

Query: 116 DAI 118
           DAI
Sbjct: 595 DAI 597



 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 23/66 (34%), Gaps = 8/66 (12%)

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134
            +A   E      +       Y ID   CI C  C + CPVDAI          E ++  
Sbjct: 524 YEAHIYEETCPAGNCQELVAGYVIDEEDCIGCTSCVDVCPVDAIE--------GEKKEAH 575

Query: 135 YYDKER 140
             D + 
Sbjct: 576 VIDTDE 581


>gi|123455670|ref|XP_001315577.1| 4Fe-4S binding domain containing protein [Trichomonas vaginalis G3]
 gi|121898258|gb|EAY03354.1| 4Fe-4S binding domain containing protein [Trichomonas vaginalis G3]
          Length = 499

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 6/65 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI C  C  +CP  A+T  +  +          + +    C+ CG C + CP  AI
Sbjct: 130 NHAACIDCYKCVDVCPTGALTKGNHLQT------FGHFGLRDSGCVSCGACVDVCPTKAI 183

Query: 119 VEGPN 123
               N
Sbjct: 184 TVTDN 188


>gi|167629058|ref|YP_001679557.1| NADH dehydrogenase conserved domain protein, nuoe and nuof
           [Heliobacterium modesticaldum Ice1]
 gi|167591798|gb|ABZ83546.1| NADH dehydrogenase conserved domain protein, nuoe and nuof
           [Heliobacterium modesticaldum Ice1]
          Length = 906

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 38/97 (39%), Gaps = 13/97 (13%)

Query: 23  CLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
            LRYF    +  IN+           R +   R       +C  C LC  +CP +AI+ E
Sbjct: 817 TLRYFRHEYEAHINHKRCPAGVCAALRPKGKFRIDEE---KCRRCGLCVRLCPVEAISGE 873

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              R          + ID  +CI CG C + CP   I
Sbjct: 874 VRKRP---------FVIDKNRCIACGACAQKCPAKCI 901



 Score = 41.2 bits (95), Expect = 0.053,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 9/70 (12%)

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE-LYYDKERLLNNGDRWE 149
           R   ++ ID  KC  CGLC   CPV+AI        + E R+     DK R +  G   +
Sbjct: 843 RPKGKFRIDEEKCRRCGLCVRLCPVEAI--------SGEVRKRPFVIDKNRCIACGACAQ 894

Query: 150 SEIVRNIVTD 159
               + I  +
Sbjct: 895 KCPAKCIARE 904


>gi|259416523|ref|ZP_05740443.1| 4Fe-4S ferredoxin, iron-sulfur binding [Silicibacter sp. TrichCH4B]
 gi|259347962|gb|EEW59739.1| 4Fe-4S ferredoxin, iron-sulfur binding [Silicibacter sp. TrichCH4B]
          Length = 667

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 31/99 (31%), Gaps = 13/99 (13%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
                      L      ++ C  C  C ++CP  A+                +      
Sbjct: 502 PLPEGAPYGAVLV----DQDACTLCLSCVSLCPPGALGDNPD---------LPQLRFQED 548

Query: 102 KCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140
            C+ CGLC   CP DAI   P    A     ++  ++E 
Sbjct: 549 ACLQCGLCANVCPEDAITYEPRLNLAASALDQMVLNEEE 587



 Score = 37.8 bits (86), Expect = 0.52,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 18/55 (32%), Gaps = 11/55 (20%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             C  C   CP  AIT                  ID + C  CG C   CP  AI
Sbjct: 294 TGCTRCLDACPTGAITPNGDSVA-----------IDPMICAGCGACASLCPSSAI 337


>gi|253573620|ref|ZP_04850963.1| pyruvate/ketoisovalerate oxidoreductase [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251847148|gb|EES75153.1| pyruvate/ketoisovalerate oxidoreductase [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 335

 Score = 53.6 bits (127), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 31/85 (36%), Gaps = 2/85 (2%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                 EE CI C  C+ +CP      E  P    G  +     ID   C  C  C  AC
Sbjct: 248 MMPHFKEESCIHCAQCDNVCPDNCFVWEERPDKK-GRPQMFLKGIDYQYCKGCLKCIHAC 306

Query: 114 PVDAIVEGPNFE-FATETRQELYYD 137
           P DA+      E +A   R    +D
Sbjct: 307 PTDALSGEREEEGYAEAHRVPHLFD 331


>gi|313898502|ref|ZP_07832039.1| 4Fe-4S binding domain protein [Clostridium sp. HGF2]
 gi|312956884|gb|EFR38515.1| 4Fe-4S binding domain protein [Clostridium sp. HGF2]
          Length = 257

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 37/105 (35%), Gaps = 12/105 (11%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
                 CI C  C   CP             +   +  + +I   +CI CG C   CP  
Sbjct: 7   QINPSLCIGCGQCAKDCP-----------TSNIQLKDKKAEILEAECIMCGHCAAICPKK 55

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161
           A+      E A E    +  D +++L    R+   I +   T+ P
Sbjct: 56  AVTISGYSEAAVEQASSVRLDPQKVLEV-IRFRRTIRQFQETEIP 99


>gi|300856106|ref|YP_003781090.1| nitroreductase family protein fused to ferredoxin domain-containing
           protein [Clostridium ljungdahlii DSM 13528]
 gi|300436221|gb|ADK15988.1| nitroreductase family protein fused to ferredoxin domain protein
           [Clostridium ljungdahlii DSM 13528]
          Length = 272

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 37/107 (34%), Gaps = 16/107 (14%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 E+CI C  C   C A+ I I  G              I+ I CI CG C   CP
Sbjct: 1   MMNVNSEKCIGCGQCVKDCFARDIEIIDGKA-----------KINNITCIKCGHCIAVCP 49

Query: 115 VDAIVEGPNFEFAT---ETRQELYYDKERLLNNGDRWESEIVRNIVT 158
             A+     +         +++   D + LL N  ++   I +    
Sbjct: 50  KSAVS-TDEYNMEDIKEYNKEDFSVDADTLL-NFIKFRRTIRQFKDK 94


>gi|226304299|ref|YP_002764257.1| ferredoxin--NADP(+) reductase [Rhodococcus erythropolis PR4]
 gi|226183414|dbj|BAH31518.1| putative ferredoxin--NADP(+) reductase [Rhodococcus erythropolis
           PR4]
          Length = 574

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 26/69 (37%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + C     C  +CPA  I             RT    ID   C+ CG C +ACP
Sbjct: 1   MPHVITQSCCNDAACVVVCPANCIHPTPDEPD---YARTEILYIDPRSCVDCGACIQACP 57

Query: 115 VDAIVEGPN 123
           VDAIV    
Sbjct: 58  VDAIVPHDE 66


>gi|124027549|ref|YP_001012869.1| pyruvate synthase subunit porD [Hyperthermus butylicus DSM 5456]
 gi|123978243|gb|ABM80524.1| pyruvate synthase subunit porD [Hyperthermus butylicus DSM 5456]
          Length = 114

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 59  GEERCIACKLCEAICPAQAITI-ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
            +++C+ C+LC   CP  AI   +       G +  + ++++   C  CG+C   CPV A
Sbjct: 47  NQDKCVRCRLCWTYCPDGAIVELDKEYVTSTGRKYKITFEVNYDYCKGCGICANECPVKA 106

Query: 118 IVEGPN 123
           I   P 
Sbjct: 107 IEMVPE 112


>gi|304313915|ref|YP_003849062.1| tungsten formylmethanofuran dehydrogenase, subunit F
           [Methanothermobacter marburgensis str. Marburg]
 gi|1890207|emb|CAA61210.1| tungsten formylmethanofuran dehydrogenase [Methanothermobacter
           thermautotrophicus]
 gi|302587374|gb|ADL57749.1| tungsten formylmethanofuran dehydrogenase, subunit F
           [Methanothermobacter marburgensis str. Marburg]
          Length = 349

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 36/72 (50%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R +         ++ CI C +CE +CP  AI IE               ++D  KC++CG
Sbjct: 139 RKDLITGEIEIDKDTCIYCGMCEEMCPVDAIEIEHQIPSSSSPTVATDINVDEDKCVHCG 198

Query: 108 LCQEACPVDAIV 119
           +C+  CPVDAI+
Sbjct: 199 ICKRICPVDAIM 210



 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 35/74 (47%), Gaps = 1/74 (1%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
              L+     +E CI CK CE  CP  AIT  +          T   +ID   CIYCG+C
Sbjct: 102 PKILKSAEIDDETCIQCKACETACPQDAIT-ITRELPERKDLITGEIEIDKDTCIYCGMC 160

Query: 110 QEACPVDAIVEGPN 123
           +E CPVDAI     
Sbjct: 161 EEMCPVDAIEIEHQ 174



 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 11/86 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-----DIDMIKCIYCGLCQEAC 113
            E++C+ C +C+ ICP  AI        +      V        ID   C+ CG CQE C
Sbjct: 190 DEDKCVHCGICKRICPVDAIMQVCRICPYGEYEIKVPEVTGTSYIDPELCVNCGWCQEIC 249

Query: 114 PVDAIVEGPNFEFATETRQELYYDKE 139
           PVDA      FE       EL  D++
Sbjct: 250 PVDAATVTKPFE------GELIIDQD 269



 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 3/87 (3%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
               +  E          +         ++ C AC+ C   CP   ++    P+      
Sbjct: 240 VNCGWCQEICPVDAATVTKPFEGELIIDQDTCQACETCVMACPCNVLSF---PKPEKSGE 296

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAI 118
           +  +   D   CIYCG C+ +CPV+AI
Sbjct: 297 KPTKLYKDERFCIYCGACERSCPVNAI 323



 Score = 42.8 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 31/86 (36%), Gaps = 4/86 (4%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R     R+    +  C  C LC  ICP  AI +          +   +  ID  KC+ CG
Sbjct: 16  RTGEENRKLIFQDCLCAVCGLCGEICPVSAIEVNPTGAMVRTEQDESKILIDENKCVLCG 75

Query: 108 LCQEACPVDA----IVEGPNFEFATE 129
           +C   CP  A    I      E A  
Sbjct: 76  MCSSICPFQALDLQIDGTSIKELAEY 101


>gi|309781571|ref|ZP_07676306.1| iron-sulfur cluster-binding protein [Ralstonia sp. 5_7_47FAA]
 gi|308919676|gb|EFP65338.1| iron-sulfur cluster-binding protein [Ralstonia sp. 5_7_47FAA]
          Length = 708

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 9/79 (11%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ERC  C  C   CP+QA+  ++               +    C+ CGLC+  CP  AI
Sbjct: 576 NRERCTLCMACVGACPSQALRDQAE---------RPVLAMIERNCVQCGLCETTCPESAI 626

Query: 119 VEGPNFEFATETRQELYYD 137
              P    + E RQ    +
Sbjct: 627 ALVPRLNLSAEARQSATLN 645



 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 7/55 (12%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C  C  +C A AI  +                +    C+ CG C  ACP  AI
Sbjct: 323 VGCNACVDVCSASAIASQWKDGRGSVH-------VTPNLCVGCGACTTACPTGAI 370



 Score = 37.8 bits (86), Expect = 0.45,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 18/48 (37%)

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               A  +   +G       +   R  ID+ +C  C  C + CP  AI
Sbjct: 168 WPVHAGELAQVNGWLGAFEVQWRNRNPIDLDRCTRCNACIDVCPEGAI 215



 Score = 35.1 bits (79), Expect = 2.9,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 25/91 (27%), Gaps = 19/91 (20%)

Query: 28  FKAKTTINYPFEKGSTSPRFRGEHALRRYP-----NGEERCIACKLCEAICPAQAITIES 82
           F       +P   G  +       A             +RC  C  C  +CP  AI    
Sbjct: 160 FVPPMERRWPVHAGELAQVNGWLGAFEVQWRNRNPIDLDRCTRCNACIDVCPEGAID--- 216

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                        Y ID+  C     C +AC
Sbjct: 217 -----------ALYQIDLDACRDHRACVKAC 236


>gi|209695337|ref|YP_002263266.1| electron transport complex protein RnfC [Aliivibrio salmonicida
           LFI1238]
 gi|208009289|emb|CAQ79555.1| electron transport complex protein RnfC [Aliivibrio salmonicida
           LFI1238]
          Length = 716

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/134 (21%), Positives = 41/134 (30%), Gaps = 10/134 (7%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
               P  K +          L  Y +    CI C  C   CP  A+  +           
Sbjct: 351 HQQIPITKITNCIITPDRKELPLYNHEMA-CIRCSSCADACPV-ALLPQQLYWYSKSEDY 408

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGD---RWE 149
               +  +  CI CG C   CP   I     +  A   + E+Y  K+  L       R+E
Sbjct: 409 EKCEEYHLSDCIECGACAYVCP-SEIPLVQYYRQA---KSEIYARKQDSLAADRAKVRFE 464

Query: 150 SEIVRNIVTDSPYR 163
            E    +  D   R
Sbjct: 465 -EKNARMERDKLER 477


>gi|38569321|gb|AAR24341.1| reductive dehalogenase homologous protein RdhA9 [Dehalococcoides
           sp. FL2]
          Length = 474

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 3/71 (4%)

Query: 59  GEERCIACKLCEAICPAQAI---TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           G E C  C +C   CP  AI                  + +  D  KC +C +CQ  CP 
Sbjct: 358 GREFCKTCGICAEACPMDAIQKGEPSWEVNHKWDNPGYLHWRNDRSKCGHCPVCQPVCPF 417

Query: 116 DAIVEGPNFEF 126
           +A+ +    E 
Sbjct: 418 NAMDKSFIHEL 428


>gi|325278925|ref|YP_004251467.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Odoribacter
           splanchnicus DSM 20712]
 gi|324310734|gb|ADY31287.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Odoribacter
           splanchnicus DSM 20712]
          Length = 1178

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 39/108 (36%), Gaps = 20/108 (18%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQA-----ITIESGPRCHDGTR-----------RTV 94
            A+       E CI C  C  +CP  A     ++ E       GT+              
Sbjct: 682 IAVNVPEWQVENCIQCNQCAYVCPHAAIRPFLMSDEELAAAPAGTQAKPAIGKELAGYKF 741

Query: 95  RYDIDMIKCIYCGLCQEACP--VDAIVEGP-NFEFATETRQELYYDKE 139
           R  +  + C  CG C + CP    A+V  P   +   E R E Y DK+
Sbjct: 742 RIQVSPLDCTGCGNCADVCPAKTKALVMRPLESQMVEENRWE-YMDKK 788


>gi|229549315|ref|ZP_04438040.1| pyruvate synthase [Enterococcus faecalis ATCC 29200]
 gi|229305552|gb|EEN71548.1| pyruvate synthase [Enterococcus faecalis ATCC 29200]
          Length = 749

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96
            AL       ++C  C  C  +CP  AI       E       G              R 
Sbjct: 251 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 310

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130
            + +  C  CGLC +ACPV   AI+  P +E   E 
Sbjct: 311 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 345


>gi|77176881|gb|ABA64545.1| reductive dehalogenase protein [Dehalococcoides sp. KB1]
          Length = 474

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 3/71 (4%)

Query: 59  GEERCIACKLCEAICPAQAI---TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           G E C  C +C   CP  AI                  + +  D  KC +C +CQ  CP 
Sbjct: 358 GREFCKTCGICAEACPMDAIQKGEPSWEVNHKWDNPGYLHWRNDRSKCGHCPVCQPVCPF 417

Query: 116 DAIVEGPNFEF 126
           +A+ +    E 
Sbjct: 418 NAMDKSFIHEL 428


>gi|325675367|ref|ZP_08155051.1| ferredoxin-NADP reductase [Rhodococcus equi ATCC 33707]
 gi|325553338|gb|EGD23016.1| ferredoxin-NADP reductase [Rhodococcus equi ATCC 33707]
          Length = 564

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           + C     C + CP   I              T    I+   CI CG C +ACPV+AI 
Sbjct: 7   QTCCNDASCVSACPVNCIHPTPEEAE---FATTEMLYIEPQACIDCGACVDACPVNAIF 62


>gi|300728139|ref|ZP_07061510.1| nitroreductase family protein [Prevotella bryantii B14]
 gi|299774565|gb|EFI71186.1| nitroreductase family protein [Prevotella bryantii B14]
          Length = 269

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 20/67 (29%), Gaps = 8/67 (11%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               + CI C  C  +CP                +          +CI CG C + CP  
Sbjct: 5   NINTDTCIMCGKCTQVCPPHIFMQREKKTPIRVFK--------PERCIDCGHCVDVCPTH 56

Query: 117 AIVEGPN 123
           +I     
Sbjct: 57  SIEHSNI 63


>gi|239909239|ref|YP_002955981.1| nucleotide-disulphide oxidoreductase family protein [Desulfovibrio
           magneticus RS-1]
 gi|239799106|dbj|BAH78095.1| nucleotide-disulphide oxidoreductase family protein [Desulfovibrio
           magneticus RS-1]
          Length = 777

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 23/66 (34%), Gaps = 6/66 (9%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C  C LCE +CP  AI+ +                    KCI CG C  ACP        
Sbjct: 718 CRDCGLCETLCPVGAISRQQKEGKEFAMVSD------PEKCIGCGFCANACPCGVWSWVE 771

Query: 123 NFEFAT 128
           N    T
Sbjct: 772 NTPLTT 777


>gi|126180364|ref|YP_001048329.1| cobyrinic acid a,c-diamide synthase [Methanoculleus marisnigri JR1]
 gi|125863158|gb|ABN58347.1| Cobyrinic acid a,c-diamide synthase [Methanoculleus marisnigri JR1]
          Length = 289

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 35/99 (35%), Gaps = 18/99 (18%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           +  T+  FRG   L       ERC  C +C   C   AI            RR   +++D
Sbjct: 49  RRLTTEEFRG---LAAARIDPERCRDCGICADHCRFGAIV-----------RRDDAWEVD 94

Query: 100 MIKCIYCGLCQEACPVDAIVEGP----NFEFATETRQEL 134
            + C  C +C   CP  AI   P        +   R  L
Sbjct: 95  TMHCEGCAVCTYVCPTGAISMEPRVCGEIYTSATDRGNL 133


>gi|126437410|ref|YP_001073101.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Mycobacterium sp. JLS]
 gi|126237210|gb|ABO00611.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Mycobacterium sp. JLS]
          Length = 561

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 21/64 (32%), Gaps = 3/64 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + C +   C   CP   I          G        ID   C+ CG C  ACP
Sbjct: 1   MPHVITQSCCSDGSCVFACPVNCIHPTPDE---PGFATAEMLYIDPAACVDCGACVSACP 57

Query: 115 VDAI 118
           V AI
Sbjct: 58  VGAI 61



 Score = 35.5 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
              +    C   G C  ACPV+ I   P+ E    T + LY D 
Sbjct: 1   MPHVITQSCCSDGSCVFACPVNCIHPTPD-EPGFATAEMLYIDP 43


>gi|108801425|ref|YP_641622.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Mycobacterium sp.
           MCS]
 gi|119870578|ref|YP_940530.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Mycobacterium sp. KMS]
 gi|108771844|gb|ABG10566.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Mycobacterium sp.
           MCS]
 gi|119696667|gb|ABL93740.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Mycobacterium sp. KMS]
          Length = 561

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 21/64 (32%), Gaps = 3/64 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + C +   C   CP   I          G        ID   C+ CG C  ACP
Sbjct: 1   MPHVITQSCCSDGSCVFACPVNCIHPTPDE---PGFATAEMLYIDPAACVDCGACVSACP 57

Query: 115 VDAI 118
           V AI
Sbjct: 58  VGAI 61



 Score = 35.5 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
              +    C   G C  ACPV+ I   P+ E    T + LY D 
Sbjct: 1   MPHVITQSCCSDGSCVFACPVNCIHPTPD-EPGFATAEMLYIDP 43


>gi|134100924|ref|YP_001106585.1| ferredoxin--NADP+ reductase [Saccharopolyspora erythraea NRRL 2338]
 gi|291003463|ref|ZP_06561436.1| ferredoxin--NADP+ reductase [Saccharopolyspora erythraea NRRL 2338]
 gi|133913547|emb|CAM03660.1| ferredoxin--NADP+ reductase [Saccharopolyspora erythraea NRRL 2338]
          Length = 508

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C     C  +CP   I          GT   +   ID   CI CG C +ACPV+AI  
Sbjct: 7   QTCCNDASCVKVCPVNCIHPTPDE-PDFGTAEMLH--IDPATCIDCGACADACPVEAIFP 63

Query: 121 GPN 123
              
Sbjct: 64  VEE 66


>gi|320333930|ref|YP_004170641.1| formate dehydrogenase subunit alpha [Deinococcus maricopensis DSM
           21211]
 gi|319755219|gb|ADV66976.1| formate dehydrogenase, alpha subunit [Deinococcus maricopensis DSM
           21211]
          Length = 1008

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 3/84 (3%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---Y 96
           +      +  +     Y    ++CI C  C   C    +             R +     
Sbjct: 123 RPFQPKPYAVDDTNPFYRYDPDQCILCGRCVEACQNLQVNETLSINWESAHPRVLWDGGR 182

Query: 97  DIDMIKCIYCGLCQEACPVDAIVE 120
           DI    C+ CG C   CP +A+ E
Sbjct: 183 DIGESSCVSCGHCVTVCPCNALQE 206



 Score = 40.5 bits (93), Expect = 0.083,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 25/75 (33%), Gaps = 9/75 (12%)

Query: 48  RGEHALRRYPNGEERCIAC----KLCEA-----ICPAQAITIESGPRCHDGTRRTVRYDI 98
           R +   R   + E  C  C      C       +   Q  T    P+ +        Y  
Sbjct: 82  REDAFDRLLAHHELYCTVCDNNNGNCTVHNTTALMRVQHQTRPFQPKPYAVDDTNPFYRY 141

Query: 99  DMIKCIYCGLCQEAC 113
           D  +CI CG C EAC
Sbjct: 142 DPDQCILCGRCVEAC 156


>gi|307130991|ref|YP_003883007.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Dickeya dadantii 3937]
 gi|306528520|gb|ADM98450.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Dickeya dadantii 3937]
          Length = 739

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 36/110 (32%), Gaps = 3/110 (2%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
            +    E+ CI C  C   CPA  +  +       G          +  CI CG C   C
Sbjct: 369 IQAQEEEQACIRCGKCADACPAG-LLPQQLYWFSRGQEHEKARQHHLFDCIECGACAYVC 427

Query: 114 PVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           P   I     +       Q L  +  + +    R+++   R +  +   R
Sbjct: 428 P-SNIPLVQYYRQKKAEIQALDLESRKAVEAKARFDARQAR-LEREKQAR 475


>gi|257466098|ref|ZP_05630409.1| hydrogenase, Fe-only [Fusobacterium gonidiaformans ATCC 25563]
 gi|315917255|ref|ZP_07913495.1| hydrogenase [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691130|gb|EFS27965.1| hydrogenase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 652

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 32/85 (37%), Gaps = 10/85 (11%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
            E         G+          E+CI C  C  +CP Q IT     R            
Sbjct: 200 EEHVEDLKCPAGQCIHLLKFKITEKCIGCTACARVCPVQCITGAPKKRHF---------- 249

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           +D  +C +CG C  ACPV AI EG 
Sbjct: 250 LDTSRCTHCGQCVSACPVGAIFEGD 274


>gi|257452106|ref|ZP_05617405.1| hydrogenase, Fe-only [Fusobacterium sp. 3_1_5R]
 gi|317058652|ref|ZP_07923137.1| hydrogenase [Fusobacterium sp. 3_1_5R]
 gi|313684328|gb|EFS21163.1| hydrogenase [Fusobacterium sp. 3_1_5R]
          Length = 652

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 32/85 (37%), Gaps = 10/85 (11%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
            E         G+          E+CI C  C  +CP Q IT     R            
Sbjct: 200 EEHVEDLKCPAGQCIHLLKFKITEKCIGCTACARVCPVQCITGAPKKRHF---------- 249

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           +D  +C +CG C  ACPV AI EG 
Sbjct: 250 LDTSRCTHCGQCVSACPVGAIFEGD 274


>gi|297563041|ref|YP_003682015.1| molybdopterin oxidoreductase Fe4S4 region [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296847489|gb|ADH69509.1| molybdopterin oxidoreductase Fe4S4 region [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 313

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 4/75 (5%)

Query: 56  YPNGEERCIACKLCEAIC--PAQAITIESGPRCHDGTRRTVRYDIDM--IKCIYCGLCQE 111
           Y     +CI C  C   C    Q              R +  +D+ +    C+YCG C E
Sbjct: 170 YVRDYSKCIMCYKCVDACGDQWQNTFAIGVAGRGFDARVSTEHDVTLPDSACVYCGNCIE 229

Query: 112 ACPVDAIVEGPNFEF 126
            CP  A+     F+ 
Sbjct: 230 VCPTGALSFRTEFDM 244


>gi|325479615|gb|EGC82707.1| 4Fe-4S binding domain protein [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 509

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 6/66 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV------RYDIDMIKCIYCGLCQEA 112
            +++CI C  C + CP  AI  +  P       + +      R DI+  KC+ CG C   
Sbjct: 146 DQDKCIKCGKCVSACPYNAINHQKRPCAESCGVKAISSDELGRADINEDKCVACGRCIIT 205

Query: 113 CPVDAI 118
           CP  AI
Sbjct: 206 CPFGAI 211



 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 5/65 (7%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-----IDMIKCIYCGLCQEACPVDA 117
           C AC   +     Q       P  +   +  V Y      ID  KCI CG C  ACP +A
Sbjct: 105 CEACPENKVTVTDQCHACIGHPCVNVCPKNAVTYTAKGAIIDQDKCIKCGKCVSACPYNA 164

Query: 118 IVEGP 122
           I    
Sbjct: 165 INHQK 169


>gi|260899671|ref|ZP_05908066.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus
           AQ4037]
 gi|308109467|gb|EFO47007.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus
           AQ4037]
          Length = 553

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 35/102 (34%), Gaps = 9/102 (8%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
              + C  C  C A+CP  A+  +          ++         CI CGLC++ACP   
Sbjct: 415 CESKDCTLCMSCVAVCPTHALHTDG---------QSPSLKFVEQDCIQCGLCEKACPEKV 465

Query: 118 IVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
           +   P   +  E RQ+     E       R         + D
Sbjct: 466 LTLTPRMNWVKEERQKAVVIHEEKAAECIRCHKPFAPQSMID 507



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 6/54 (11%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           C+ C   CPA A++ E   +         R +I+   C   G C  ACP +AI 
Sbjct: 186 CERCVDACPAGALSSEGSDKTGH------RIEINPYLCQGVGTCATACPTEAIH 233


>gi|281356040|ref|ZP_06242533.1| Ferredoxin hydrogenase [Victivallis vadensis ATCC BAA-548]
 gi|281317409|gb|EFB01430.1| Ferredoxin hydrogenase [Victivallis vadensis ATCC BAA-548]
          Length = 463

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 59  GEERCIACKLCEAICPAQA------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
              +CI C  C  +CP  A         ++ P    G     R  ID   CIYCG C  A
Sbjct: 142 DRTKCINCGKCMTVCPYHAIIRNPLPCEDACPVGAIGKGEDGRVRIDFKNCIYCGKCFRA 201

Query: 113 CPVDAIVE 120
           CP  AI+E
Sbjct: 202 CPFSAIME 209



 Score = 40.1 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 22/65 (33%), Gaps = 5/65 (7%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCIYCGLCQEACPVDA 117
           C  C           +   + P      ++       R  ID  KCI CG C   CP  A
Sbjct: 101 CHGCVDSHVQVSNSCVGCFARPCVGVCPKQAIQVINQRSTIDRTKCINCGKCMTVCPYHA 160

Query: 118 IVEGP 122
           I+  P
Sbjct: 161 IIRNP 165


>gi|114567215|ref|YP_754369.1| 2Fe-2S iron-sulfur cluster binding domain-containing protein
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
 gi|114338150|gb|ABI68998.1| 2Fe-2S iron-sulfur cluster domain with dehydrogenase
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 247

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/105 (27%), Positives = 35/105 (33%), Gaps = 6/105 (5%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            EERCI C+LC   C     +  S        R    YD     CI C  C   CP  AI
Sbjct: 119 EEERCIVCRLCVLACEKMGTSAISTVMRGIDKRVGTPYDQAATACIGCAACAHICPTGAI 178

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
                   +  TR    ++K   L N +R           D   R
Sbjct: 179 EVLD----SGNTRT--IWNKNFNLINCERCGQPFATREQIDHVSR 217


>gi|317497055|ref|ZP_07955382.1| 4Fe-4S binding domain-containing protein [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316895600|gb|EFV17755.1| 4Fe-4S binding domain-containing protein [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 481

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 28/74 (37%), Gaps = 6/74 (8%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCI 104
               R     ++C  C +C   CP  AI   S P         + YD      ID  KCI
Sbjct: 118 PGHTRSRIDPQKCKECGMCAKACPYNAIAHVSRPCKDSCPVDAISYDEYGVSVIDEEKCI 177

Query: 105 YCGLCQEACPVDAI 118
            CG C   CP  AI
Sbjct: 178 RCGQCAAKCPFGAI 191



 Score = 38.2 bits (87), Expect = 0.42,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 21/63 (33%), Gaps = 5/63 (7%)

Query: 63  CIACKLCEAICPAQAI-----TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           C  C +   +                 R         R  ID  KC  CG+C +ACP +A
Sbjct: 85  CADCPISSYVVTNNCQNCLGKDCIKACRFGAIEPGHTRSRIDPQKCKECGMCAKACPYNA 144

Query: 118 IVE 120
           I  
Sbjct: 145 IAH 147


>gi|307594818|ref|YP_003901135.1| methyl-viologen-reducing hydrogenase subunit delta [Vulcanisaeta
           distributa DSM 14429]
 gi|307550019|gb|ADN50084.1| methyl-viologen-reducing hydrogenase delta subunit [Vulcanisaeta
           distributa DSM 14429]
          Length = 1226

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 30/83 (36%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
              R +  L R     E CI  +LC   CP   + +        G           + C+
Sbjct: 7   DVNRVKRPLGRLKITPEMCIGDELCVKRCPMGILELTREEVNPRGYHYVRIKPGKEVDCV 66

Query: 105 YCGLCQEACPVDAIVEGPNFEFA 127
            CG+C++ CP +AI      E  
Sbjct: 67  ACGICEKVCPTNAIYVEHEEEIT 89



 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 22/62 (35%), Gaps = 10/62 (16%)

Query: 59   GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               +C+ C LC   CP  AI  E G              I+   C  CG C   CP  A+
Sbjct: 1014 DPGKCVGCLLCVKACPYGAIKGEPGKPV----------TINPAACQGCGSCVGECPYGAL 1063

Query: 119  VE 120
              
Sbjct: 1064 DM 1065



 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 16/36 (44%)

Query: 87   HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                +      +D  KC+ C LC +ACP  AI   P
Sbjct: 1002 DYIIKEVSVPRVDPGKCVGCLLCVKACPYGAIKGEP 1037



 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 23/92 (25%), Gaps = 15/92 (16%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE-------SGPRCHDGTRRTVRY 96
              +R    L +       C  C LCE +CP    +                       Y
Sbjct: 193 PGHYR-AKILVKPRYVTNECTKCGLCEGVCPVVVPSEYNAGIGLRKAIYLPFPQAEPGIY 251

Query: 97  DIDMIKC-------IYCGLCQEACPVDAIVEG 121
            ID   C       I C  C   C    I+  
Sbjct: 252 AIDPDLCLNKPPENIACNRCVSVCEPRTILFT 283



 Score = 35.1 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 15/34 (44%)

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
            G   H   +  V+      +C  CGLC+  CPV
Sbjct: 190 KGEPGHYRAKILVKPRYVTNECTKCGLCEGVCPV 223


>gi|296395410|ref|YP_003660294.1| monooxygenase FAD-binding protein [Segniliparus rotundus DSM 44985]
 gi|296182557|gb|ADG99463.1| monooxygenase FAD-binding protein [Segniliparus rotundus DSM 44985]
          Length = 556

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 22/64 (34%), Gaps = 3/64 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + C +   C   CP   I          G        ID   C+ CG C  ACP
Sbjct: 1   MPHVITQSCCSDGSCVFACPVNCIHPTPDE---PGFLTAETLHIDPAACVDCGACVHACP 57

Query: 115 VDAI 118
           VDAI
Sbjct: 58  VDAI 61



 Score = 35.1 bits (79), Expect = 3.2,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
              +    C   G C  ACPV+ I   P+ E    T + L+ D 
Sbjct: 1   MPHVITQSCCSDGSCVFACPVNCIHPTPD-EPGFLTAETLHIDP 43


>gi|330828774|ref|YP_004391726.1| iron-sulfur cluster-binding protein [Aeromonas veronii B565]
 gi|328803910|gb|AEB49109.1| Iron-sulfur cluster-binding protein [Aeromonas veronii B565]
          Length = 588

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 9/71 (12%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             C  C  C A+CP++A+                  +     CI CG+C++ACP  AIV 
Sbjct: 454 SDCTLCMGCVAVCPSRALHAVGHAPG---------LNFIEQDCIQCGMCEKACPEQAIVL 504

Query: 121 GPNFEFATETR 131
            P  +   E R
Sbjct: 505 TPRLQPVPEAR 515



 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 11/53 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C  +CP  A+   +G           R  ID   C   G C  ACP  AI
Sbjct: 230 CSRCLDVCPTDALKPING-----------RIQIDPHLCQGFGSCASACPTGAI 271



 Score = 34.3 bits (77), Expect = 5.6,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 12/45 (26%)

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            QA      P            ++    C  C  C   CP  A+ 
Sbjct: 428 WQANEGNREPLAVPHGAPYGSVELKESDCTLCMGCVAVCPSRALH 472



 Score = 33.5 bits (75), Expect = 9.7,   Method: Composition-based stats.
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR--YDIDMIKCIYC 106
           + CI C +CE  CP QAI +    +     RR V+     +   CI C
Sbjct: 485 QDCIQCGMCEKACPEQAIVLTPRLQPVPEARRAVQSLKAEEAACCIRC 532


>gi|83312474|ref|YP_422738.1| putative glutamate synthase (NADPH) small subunit [Magnetospirillum
           magneticum AMB-1]
 gi|82947315|dbj|BAE52179.1| NADPH-dependent glutamate synthase beta chain and related
           oxidoreductase [Magnetospirillum magneticum AMB-1]
          Length = 651

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 4/59 (6%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           C  C  C   CP  A++         G      Y     KCI C +C++ CP   I  G
Sbjct: 594 CFECDNCVVFCPQTAVSRVKKSERTTGRYVETDY----AKCIGCHICKDVCPTGYIQMG 648


>gi|254787398|ref|YP_003074827.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Teredinibacter
           turnerae T7901]
 gi|237686318|gb|ACR13582.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Teredinibacter
           turnerae T7901]
          Length = 1195

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 36/121 (29%), Gaps = 24/121 (19%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPR 85
              T+   +   A+       E CI C  C  +CP                A        
Sbjct: 675 PTGTTQWEKRNIAMDIPIWDSELCIQCGNCSIVCPHATIRAKFYRESALVNAPDSFRSAD 734

Query: 86  CHDGTRRTVRY--DIDMIKCIYCGLCQEACPV--------DAIVEGPNFEFATETRQELY 135
                   +RY   +    C  CGLC  ACPV         AI   P  E+    ++ L 
Sbjct: 735 VTARGFPDLRYTLQVYPEDCTGCGLCVRACPVNDPQDESRHAINMQPKQEWFESEKENLS 794

Query: 136 Y 136
           +
Sbjct: 795 F 795


>gi|182417722|ref|ZP_02949040.1| uptake hydrogenase [Clostridium butyricum 5521]
 gi|237668967|ref|ZP_04528951.1| NADH dehydrogenase [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|182378446|gb|EDT75977.1| uptake hydrogenase [Clostridium butyricum 5521]
 gi|237657315|gb|EEP54871.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 656

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 15/96 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            L+Y FK + T +   +K           AL  Y   +++C  C  C   CP QAI  E 
Sbjct: 573 TLKY-FKEEYTAHVVDKKCPGGVC----KALISYEINKDKCRGCSKCSRNCPVQAIQGEI 627

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                        ++ID  KCI CG C   CP +A+
Sbjct: 628 KK----------TFEIDKEKCIKCGQCIIECPFNAV 653


>gi|148270498|ref|YP_001244958.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1]
 gi|147736042|gb|ABQ47382.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1]
          Length = 626

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 30/69 (43%), Gaps = 10/69 (14%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           A ++Y    + C  C LC   CP  AIT E G            Y I+  KC+ CGLC  
Sbjct: 567 AFKKYVINPDICKGCGLCARSCPQNAITGERGKP----------YTINQEKCVKCGLCAS 616

Query: 112 ACPVDAIVE 120
            CP  AI  
Sbjct: 617 KCPFKAIEL 625



 Score = 41.6 bits (96), Expect = 0.039,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 16/39 (41%)

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              G           +Y I+   C  CGLC  +CP +AI
Sbjct: 555 HIEGECPSGMCTAFKKYVINPDICKGCGLCARSCPQNAI 593


>gi|291545110|emb|CBL18219.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric
           [Ruminococcus sp. 18P13]
          Length = 1180

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 36/100 (36%), Gaps = 16/100 (16%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA---------------QAITIES 82
           FE+G+++   RG   +    N  E C  C  C  +CP                     + 
Sbjct: 671 FEQGASAYEKRGVAVMVPTWN-AETCAKCNKCAFVCPHATIRPFAMNAEEAAAAPANTKK 729

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            P+    T  T    I  + C+ CG+C   CP  ++   P
Sbjct: 730 APKPIVKTDYTYTLAISPMDCMGCGVCIGVCPTKSLTMVP 769


>gi|118616138|ref|YP_904470.1| NADPH:adrenodoxin oxidoreductase FprB [Mycobacterium ulcerans
           Agy99]
 gi|118568248|gb|ABL02999.1| NADPH:adrenodoxin oxidoreductase FprB [Mycobacterium ulcerans
           Agy99]
          Length = 561

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 3/64 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + C     C   CP   I          G   +    ID + C+ CG C  ACP
Sbjct: 1   MPHVITQSCCNDGSCVFACPVNCIHPTPDE---PGFATSEMLYIDPVTCVDCGACVSACP 57

Query: 115 VDAI 118
           V AI
Sbjct: 58  VGAI 61



 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
              +    C   G C  ACPV+ I   P+ E    T + LY D 
Sbjct: 1   MPHVITQSCCNDGSCVFACPVNCIHPTPD-EPGFATSEMLYIDP 43


>gi|325284680|ref|YP_004264143.1| formate dehydrogenase, alpha subunit [Deinococcus proteolyticus
           MRP]
 gi|324316169|gb|ADY27283.1| formate dehydrogenase, alpha subunit [Deinococcus proteolyticus
           MRP]
          Length = 1060

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 3/84 (3%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---Y 96
           +      +  + +   Y    ++CI C  C   C    +             R +     
Sbjct: 185 RPYHPKGYEKDFSNPFYRYDPDQCILCGRCVEACQNVQVNETLSINWEAEQPRVLWDGGK 244

Query: 97  DIDMIKCIYCGLCQEACPVDAIVE 120
            I    C+ CG C   CP +A++E
Sbjct: 245 PIGESSCVSCGHCITVCPCNALME 268



 Score = 40.5 bits (93), Expect = 0.079,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 21/69 (30%), Gaps = 9/69 (13%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRRTV-----RYDIDMIKCI 104
           R   N    C  C      C        + +E   R +             Y  D  +CI
Sbjct: 150 RLIANHVLYCTVCDNNNGNCAVHNTLSTLRLEHQHRPYHPKGYEKDFSNPFYRYDPDQCI 209

Query: 105 YCGLCQEAC 113
            CG C EAC
Sbjct: 210 LCGRCVEAC 218


>gi|323704270|ref|ZP_08115849.1| NADH dehydrogenase (quinone) [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323536336|gb|EGB26108.1| NADH dehydrogenase (quinone) [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 596

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 15/97 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            ++Y F+ +   +   ++           AL ++    ++C  C +C   CP  AI+   
Sbjct: 513 TIKY-FRDEYEAHIKEKRCPAGVC----QALLKFRIDPDKCKGCGICAKNCPTNAISG-- 565

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
                   +    + ID  KCI CG C + CP DAI 
Sbjct: 566 --------KVKQPHVIDQDKCIKCGTCMDKCPFDAIY 594


>gi|123505468|ref|XP_001328981.1| Iron only hydrogenase large subunit, C-terminal domain containing
           protein [Trichomonas vaginalis G3]
 gi|121911931|gb|EAY16758.1| Iron only hydrogenase large subunit, C-terminal domain containing
           protein [Trichomonas vaginalis G3]
          Length = 541

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 24/98 (24%), Gaps = 11/98 (11%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-QAITIESGP 84
              K                       L         CI C  C   C   QA+      
Sbjct: 94  MMPKTPEIEELYTYLKPARKVNMTPQKLTSISFDPGLCIQCDRCTRACSDIQAMDAIQED 153

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                      + I    CI CG C   CP +AI E P
Sbjct: 154 ----------THQIIDFDCIQCGQCANVCPTNAIYETP 181


>gi|269963060|ref|ZP_06177396.1| iron-sulfur cluster-binding protein [Vibrio harveyi 1DA3]
 gi|269832192|gb|EEZ86315.1| iron-sulfur cluster-binding protein [Vibrio harveyi 1DA3]
          Length = 553

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 35/102 (34%), Gaps = 9/102 (8%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
              + C  C  C A+CP +A+  +           +         CI CGLC++ACP   
Sbjct: 415 CESKDCTLCMSCVAVCPTRALHTDGE---------SPSLKFVEQDCIQCGLCEKACPEKV 465

Query: 118 IVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
           +   P   +  E RQ+     E       R         + D
Sbjct: 466 LTLTPRMNWVKEERQKAVVIHEEKAAECIRCHKPFAPQSMID 507



 Score = 39.3 bits (90), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 6/54 (11%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           C+ C   CPA A++ E   +         R +I+   C   G C  ACP +AI 
Sbjct: 186 CERCVDACPAGALSSEGSDKTGH------RIEINPYLCQGVGTCATACPTEAIH 233


>gi|153832369|ref|ZP_01985036.1| iron-sulfur cluster-binding protein [Vibrio harveyi HY01]
 gi|156974556|ref|YP_001445463.1| ferredoxin [Vibrio harveyi ATCC BAA-1116]
 gi|148871398|gb|EDL70261.1| iron-sulfur cluster-binding protein [Vibrio harveyi HY01]
 gi|156526150|gb|ABU71236.1| hypothetical protein VIBHAR_02274 [Vibrio harveyi ATCC BAA-1116]
          Length = 553

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 35/102 (34%), Gaps = 9/102 (8%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
              + C  C  C A+CP +A+  +           +         CI CGLC++ACP   
Sbjct: 415 CESKDCTLCMSCVAVCPTRALHTDGE---------SPSLKFVEQDCIQCGLCEKACPEKV 465

Query: 118 IVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
           +   P   +  E RQ+     E       R         + D
Sbjct: 466 LTLTPRMNWVKEERQKAVVIHEEKAAECIRCHKPFAPQSMID 507



 Score = 39.3 bits (90), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 6/54 (11%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           C+ C   CPA A++ E   +         R +I+   C   G C  ACP +AI 
Sbjct: 186 CERCVDACPAGALSSEGSDKTGH------RIEINPYLCQGVGTCATACPTEAIH 233


>gi|91223727|ref|ZP_01258991.1| iron-sulfur cluster-binding protein [Vibrio alginolyticus 12G01]
 gi|91191219|gb|EAS77484.1| iron-sulfur cluster-binding protein [Vibrio alginolyticus 12G01]
          Length = 553

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 36/102 (35%), Gaps = 9/102 (8%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
              + C  C  C A+CP +A+  +          R+         CI CGLC++ACP   
Sbjct: 415 CESKGCTLCMSCVAVCPTRALHTDG---------RSPSLKFVEQDCIQCGLCEKACPEKV 465

Query: 118 IVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
           +   P   +  E RQ+     E       R         + D
Sbjct: 466 LTLTPRMNWVKEERQKAVVIHEEKAAECIRCHKPFAPQSMID 507



 Score = 40.1 bits (92), Expect = 0.10,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 6/54 (11%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           C+ C   CPA A++ E   R         R +I+   C   G C  ACP +AI 
Sbjct: 186 CERCVDACPAGALSSEGSDRTGH------RIEINPYLCQGVGTCATACPTEAIH 233


>gi|330506526|ref|YP_004382954.1| formylmethanofuran dehydrogenase subunit F [Methanosaeta concilii
           GP-6]
 gi|328927334|gb|AEB67136.1| formylmethanofuran dehydrogenase, subunit F [Methanosaeta concilii
           GP-6]
          Length = 343

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 2/86 (2%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT-RRTVRYDIDMIKCIYCGLC 109
            A++      E+C+ C LC  +CP   I +E      DG+ +   R  ID+ +C++CG C
Sbjct: 94  VAIKSTVVDSEKCVHCGLCCDVCPQACIELEDRHLAEDGSLKVGGRTIIDLERCVHCGWC 153

Query: 110 QEACPVDAIVEGPNFEFATETRQELY 135
              CP  AI     F   T +R +  
Sbjct: 154 ASVCPTGAISFEKPFA-GTFSRDDNV 178



 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           +   +  C ACK C   CPA A+          G + + R       CIYCG C +ACPV
Sbjct: 172 FSRDDNVCQACKTCVHTCPANALFNREWKAGERGEKVSHR----PDACIYCGACAQACPV 227

Query: 116 DAIVEGP 122
            AIV   
Sbjct: 228 RAIVVSK 234



 Score = 38.9 bits (89), Expect = 0.24,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 1/65 (1%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDG-TRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +RCI C  C  +CP   + I S      G   +          C +C LC   CP  A+
Sbjct: 18  PDRCIGCGTCVQVCPKGELIIGSVGAVVRGLIDKDFIEKRMSGACAFCALCSRVCPTGAL 77

Query: 119 VEGPN 123
               N
Sbjct: 78  EFRKN 82



 Score = 37.0 bits (84), Expect = 0.90,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 16/77 (20%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRR----------------TVRYDIDMI 101
           +  + CI C  C   CP +AI +       +   +                T   + D I
Sbjct: 210 HRPDACIYCGACAQACPVRAIVVSKTAIIPEMKGKGAFEKKLALPLPRPTLTSCLETDEI 269

Query: 102 KCIYCGLCQEACPVDAI 118
            C+ CG C  ACPV+A+
Sbjct: 270 ACLGCGNCVIACPVNAL 286



 Score = 35.5 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 8/61 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ERC+ C  C ++CP  AI+ E              +  D   C  C  C   CP +A+
Sbjct: 143 DLERCVHCGWCASVCPTGAISFEK--------PFAGTFSRDDNVCQACKTCVHTCPANAL 194

Query: 119 V 119
            
Sbjct: 195 F 195



 Score = 33.5 bits (75), Expect = 8.7,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 24/77 (31%), Gaps = 9/77 (11%)

Query: 55  RYPNGEERCIACKLCEAICPAQAIT---------IESGPRCHDGTRRTVRYDIDMIKCIY 105
                E  C+ C  C   CP  A++          E   +     R      +D   C  
Sbjct: 263 CLETDEIACLGCGNCVIACPVNALSDPYLAAGHLNELEIKPLLEVRDGTVKVVDQEVCGS 322

Query: 106 CGLCQEACPVDAIVEGP 122
           C  C   CP DAI   P
Sbjct: 323 CATCSMICPADAIRLVP 339


>gi|297617763|ref|YP_003702922.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297145600|gb|ADI02357.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 354

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 14/79 (17%)

Query: 59  GEERCIACKLC-EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
               CI C +C E  CP +AI +                 ++  +CI CGLC   CP +A
Sbjct: 273 DAPECIGCGICAEERCPVKAIEMIEDIAV-----------LNNDRCIGCGLCVSKCPTNA 321

Query: 118 IVE--GPNFEFATETRQEL 134
           I      ++EF  ET +EL
Sbjct: 322 ISLVKRDDYEFPPETVREL 340



 Score = 37.0 bits (84), Expect = 0.83,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%)

Query: 97  DIDMIKCIYCGLCQEA-CPVDAIVEGPNFEFATETR 131
            ID  +CI CG+C E  CPV AI    +       R
Sbjct: 271 RIDAPECIGCGICAEERCPVKAIEMIEDIAVLNNDR 306


>gi|296169651|ref|ZP_06851269.1| ferredoxin--NADP(+) reductase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295895648|gb|EFG75344.1| ferredoxin--NADP(+) reductase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 563

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 3/64 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + C     C   CP   I          G   +    ID + C+ CG C  ACP
Sbjct: 1   MPHVITQSCCNDGSCVFACPVNCIHPTPDE---PGFATSEMLYIDPVACVDCGACVSACP 57

Query: 115 VDAI 118
           V AI
Sbjct: 58  VGAI 61



 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
              +    C   G C  ACPV+ I   P+ E    T + LY D 
Sbjct: 1   MPHVITQSCCNDGSCVFACPVNCIHPTPD-EPGFATSEMLYIDP 43


>gi|183984613|ref|YP_001852904.1| NADPH:adrenodoxin oxidoreductase FprB [Mycobacterium marinum M]
 gi|183177939|gb|ACC43049.1| NADPH:adrenodoxin oxidoreductase FprB [Mycobacterium marinum M]
          Length = 561

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 3/64 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + C     C   CP   I          G   +    ID + C+ CG C  ACP
Sbjct: 1   MPHVITQSCCNDGSCVFACPVNCIHPTPDE---PGFATSEMLYIDPVACVDCGACVSACP 57

Query: 115 VDAI 118
           V AI
Sbjct: 58  VGAI 61



 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
              +    C   G C  ACPV+ I   P+ E    T + LY D 
Sbjct: 1   MPHVITQSCCNDGSCVFACPVNCIHPTPD-EPGFATSEMLYIDP 43


>gi|167767746|ref|ZP_02439799.1| hypothetical protein CLOSS21_02281 [Clostridium sp. SS2/1]
 gi|167710485|gb|EDS21064.1| hypothetical protein CLOSS21_02281 [Clostridium sp. SS2/1]
 gi|291558899|emb|CBL37699.1| Iron only hydrogenase large subunit, C-terminal domain
           [butyrate-producing bacterium SSC/2]
          Length = 481

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 28/74 (37%), Gaps = 6/74 (8%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCI 104
               R     ++C  C +C   CP  AI   S P         + YD      ID  KCI
Sbjct: 118 PGHTRSRIDPQKCKECGMCAKACPYNAIAHVSRPCKDSCPVDAISYDEYGVSVIDEEKCI 177

Query: 105 YCGLCQEACPVDAI 118
            CG C   CP  AI
Sbjct: 178 RCGQCAAKCPFGAI 191



 Score = 38.2 bits (87), Expect = 0.45,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 21/63 (33%), Gaps = 5/63 (7%)

Query: 63  CIACKLCEAICPAQAI-----TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           C  C +   +                 R         R  ID  KC  CG+C +ACP +A
Sbjct: 85  CADCPISSYVVTNNCQNCLGKDCIKACRFGAIEPGHTRSRIDPQKCKECGMCAKACPYNA 144

Query: 118 IVE 120
           I  
Sbjct: 145 IAH 147


>gi|152990043|ref|YP_001355765.1| NADH-quinone oxidoreductase, chain G [Nitratiruptor sp. SB155-2]
 gi|151421904|dbj|BAF69408.1| NADH-quinone oxidoreductase, chain G [Nitratiruptor sp. SB155-2]
          Length = 758

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 26/78 (33%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
            ++R              CI C+ C  +C                  + V  + + + C 
Sbjct: 127 DQYRPIQKWNYIQYDPSLCILCEKCVHVCNEVIGDDAIEIEYGGYKSKIVPKNAETLDCT 186

Query: 105 YCGLCQEACPVDAIVEGP 122
           +CG C   CPV A++   
Sbjct: 187 FCGECIAVCPVGALISSD 204


>gi|226324119|ref|ZP_03799637.1| hypothetical protein COPCOM_01897 [Coprococcus comes ATCC 27758]
 gi|225207668|gb|EEG90022.1| hypothetical protein COPCOM_01897 [Coprococcus comes ATCC 27758]
          Length = 482

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 25/68 (36%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110
                +C  C  C   CP  AI     P         + YD      ID  KCI CG C 
Sbjct: 124 HIDASKCKECGQCAKACPYNAIAHLKRPCKFSCPVDAITYDEHGISIIDKNKCIRCGKCI 183

Query: 111 EACPVDAI 118
            +CP  AI
Sbjct: 184 HSCPFGAI 191



 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 23/62 (37%), Gaps = 13/62 (20%)

Query: 61  ERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           E C  C  K C   C   AI                R  ID  KC  CG C +ACP +AI
Sbjct: 97  ENCQNCLGKACINACKFGAIEPG-----------HYRSHIDASKCKECGQCAKACPYNAI 145

Query: 119 VE 120
             
Sbjct: 146 AH 147


>gi|170289107|ref|YP_001739345.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2]
 gi|170176610|gb|ACB09662.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2]
          Length = 626

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 30/69 (43%), Gaps = 10/69 (14%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           A ++Y    + C  C LC   CP  AIT E G            Y I+  KC+ CGLC  
Sbjct: 567 AFKKYVINPDICKGCGLCARSCPQNAITGERGKP----------YTINQEKCVKCGLCAS 616

Query: 112 ACPVDAIVE 120
            CP  AI  
Sbjct: 617 KCPFKAIEL 625



 Score = 41.2 bits (95), Expect = 0.041,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 16/39 (41%)

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              G           +Y I+   C  CGLC  +CP +AI
Sbjct: 555 HIEGECPSGMCTAFKKYVINPDICKGCGLCARSCPQNAI 593


>gi|3355643|emb|CAA08780.1| tungsten formylmethanofuran dehydrogenase subunit fwdF
           [Methanothermobacter wolfeii]
          Length = 349

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 35/72 (48%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R +         ++ CI C +CE +CP  AI I+                +D  KC++CG
Sbjct: 139 RKDLVTGEIEIDKDTCIYCGMCEEMCPVDAIEIDHQTPSSASPVVATDIRVDEDKCVHCG 198

Query: 108 LCQEACPVDAIV 119
           +C+  CPVDAI+
Sbjct: 199 ICKRICPVDAIM 210



 Score = 50.9 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/74 (37%), Positives = 35/74 (47%), Gaps = 1/74 (1%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
              ++     +E CI CK CE  CP  AIT  +          T   +ID   CIYCG+C
Sbjct: 102 PKIIKSAEIDDETCIQCKACETACPQDAIT-ITRELPERKDLVTGEIEIDKDTCIYCGMC 160

Query: 110 QEACPVDAIVEGPN 123
           +E CPVDAI     
Sbjct: 161 EEMCPVDAIEIDHQ 174



 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 11/86 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-----DIDMIKCIYCGLCQEAC 113
            E++C+ C +C+ ICP  AI        +               ID   C+ CG CQE C
Sbjct: 190 DEDKCVHCGICKRICPVDAIMQVCRICPYGEYEIKTPEVTGTSYIDPELCVNCGWCQEIC 249

Query: 114 PVDAIVEGPNFEFATETRQELYYDKE 139
           PVDA      FE       EL  D++
Sbjct: 250 PVDAATVTKPFE------GELIIDQD 269



 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 3/92 (3%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
               +  E          +         ++ C AC+ C  +CP   ++    P+      
Sbjct: 240 VNCGWCQEICPVDAATVTKPFEGELIIDQDTCQACETCVMVCPCNVLSF---PKPEKPGE 296

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +T +   D   CIYCG C+ +CPV AI    N
Sbjct: 297 KTTKLHKDERFCIYCGACERSCPVTAITVKRN 328



 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 4/89 (4%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG----PRCHDGTRRTV 94
           E   T    R E    +    E +C+ C +C +ICP QA+ ++          +  +   
Sbjct: 47  EVNPTGAMVRTEQEKSKIAIDENKCVLCGMCSSICPFQALDLQIDGTSIKELAEYPKIIK 106

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
             +ID   CI C  C+ ACP DAI     
Sbjct: 107 SAEIDDETCIQCKACETACPQDAITITRE 135



 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 31/86 (36%), Gaps = 4/86 (4%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R     RR    +  C  C LC  ICP  AI +          +   +  ID  KC+ CG
Sbjct: 16  RTGEENRRLIFQDCLCAVCGLCGEICPVSAIEVNPTGAMVRTEQEKSKIAIDENKCVLCG 75

Query: 108 LCQEACPVDA----IVEGPNFEFATE 129
           +C   CP  A    I      E A  
Sbjct: 76  MCSSICPFQALDLQIDGTSIKELAEY 101


>gi|15828144|ref|NP_302407.1| ferredoxin, ferredoxin-NADP reductase [Mycobacterium leprae TN]
 gi|221230621|ref|YP_002504037.1| ferredoxin, ferredoxin-NADP reductase [Mycobacterium leprae Br4923]
 gi|17432976|sp|O33064|FPRB_MYCLE RecName: Full=Probable ferredoxin/ferredoxin--NADP reductase;
           Short=FNR
 gi|2440106|emb|CAB16679.1| ferredoxin [Mycobacterium leprae]
 gi|13093698|emb|CAC31089.1| ferredoxin, ferredoxin-NADP reductase [Mycobacterium leprae]
 gi|219933728|emb|CAR72231.1| ferredoxin, ferredoxin-NADP reductase [Mycobacterium leprae Br4923]
          Length = 555

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 3/64 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + C     C   CP   I          G   +    ID + C+ CG C  ACP
Sbjct: 1   MPYIITQSCCNDGSCVFACPVNCIHPTPDE---PGFATSEMLYIDPVACVDCGACVSACP 57

Query: 115 VDAI 118
           V AI
Sbjct: 58  VGAI 61



 Score = 37.8 bits (86), Expect = 0.55,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
              I    C   G C  ACPV+ I   P+ E    T + LY D 
Sbjct: 1   MPYIITQSCCNDGSCVFACPVNCIHPTPD-EPGFATSEMLYIDP 43


>gi|300814458|ref|ZP_07094720.1| 4Fe-4S binding domain protein [Peptoniphilus sp. oral taxon 836
           str. F0141]
 gi|300511428|gb|EFK38666.1| 4Fe-4S binding domain protein [Peptoniphilus sp. oral taxon 836
           str. F0141]
          Length = 505

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQEA 112
            +E+CI C  C   CP  AI +   P       +        R DID  KC+ CG C   
Sbjct: 146 DKEKCIRCGRCHEACPYNAIVMYDRPCAAVCGVKAIGSDDFDRADIDQDKCVACGRCIAT 205

Query: 113 CPVDAI 118
           CP  AI
Sbjct: 206 CPFGAI 211



 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 23/65 (35%), Gaps = 5/65 (7%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-----DIDMIKCIYCGLCQEACPVDA 117
           C AC               + P  +      +        ID  KCI CG C EACP +A
Sbjct: 105 CEACPTKSYFVTNNCRKCIAHPCINVCPVNAISMGKDSTIIDKEKCIRCGRCHEACPYNA 164

Query: 118 IVEGP 122
           IV   
Sbjct: 165 IVMYD 169


>gi|325960196|ref|YP_004291662.1| methyl-viologen-reducing hydrogenase subunit delta
           [Methanobacterium sp. AL-21]
 gi|325331628|gb|ADZ10690.1| methyl-viologen-reducing hydrogenase delta subunit
           [Methanobacterium sp. AL-21]
          Length = 771

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 25/69 (36%), Gaps = 7/69 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIES-------GPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
             +RC +C  C  IC        +                    + ID   CI CG C E
Sbjct: 239 DGDRCTSCGRCAEICSINVPDEFNFNLTLRNAAYKPFAGALPSSFSIDPDACIKCGKCVE 298

Query: 112 ACPVDAIVE 120
           ACPVDAI  
Sbjct: 299 ACPVDAINL 307



 Score = 38.5 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 12/62 (19%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++RC  C  C   CPA+AI ++               ++D + C  CG C   C   A+
Sbjct: 578 DQDRCNQCLSCLEQCPAKAIYLDK------------MVEVDPVACTGCGYCVSLCETKAL 625

Query: 119 VE 120
             
Sbjct: 626 SL 627


>gi|209694967|ref|YP_002262896.1| putative ferredoxin [Aliivibrio salmonicida LFI1238]
 gi|208008919|emb|CAQ79135.1| putative ferredoxin [Aliivibrio salmonicida LFI1238]
          Length = 558

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 10/81 (12%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C  C  C A+CP +A+  +           +         C+ CGLC  ACP  A+  
Sbjct: 423 KDCTLCMGCVAVCPTRALHGDQD---------SPTLKFIEQDCVQCGLCVNACPEKALSM 473

Query: 121 GPNFEFATETRQE-LYYDKER 140
                +  E RQE     KE 
Sbjct: 474 KVQMNWNKEERQETQIMHKED 494



 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 6/53 (11%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C+ C   CPA A+T E                I+   C   G C  ACP +AI
Sbjct: 189 CERCVDACPAGALTSEGTAETGHNI------QINPYLCQGVGTCSTACPTEAI 235


>gi|226323626|ref|ZP_03799144.1| hypothetical protein COPCOM_01401 [Coprococcus comes ATCC 27758]
 gi|225207810|gb|EEG90164.1| hypothetical protein COPCOM_01401 [Coprococcus comes ATCC 27758]
          Length = 622

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 27/68 (39%), Gaps = 10/68 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           LR++    E C  C  C   CPA AI                 Y I+  KCI CG C E 
Sbjct: 563 LRKFQIDPEICKGCSKCARNCPAGAIEGVLK----------SPYHINQEKCIKCGACMEQ 612

Query: 113 CPVDAIVE 120
           CP  AI  
Sbjct: 613 CPFKAIHI 620


>gi|241663771|ref|YP_002982131.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Ralstonia pickettii 12D]
 gi|240865798|gb|ACS63459.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ralstonia
           pickettii 12D]
          Length = 719

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 9/79 (11%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ERC  C  C   CP+QA+  ++               +    C+ CGLC+  CP  AI
Sbjct: 587 NRERCTLCMACVGACPSQALRDQAE---------RPVLAMIERNCVQCGLCETTCPESAI 637

Query: 119 VEGPNFEFATETRQELYYD 137
              P    + E RQ    +
Sbjct: 638 ALVPRLNLSAEARQSATLN 656



 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 7/55 (12%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C  C  +C A AI  +                +    C+ CG C  ACP  AI
Sbjct: 334 VGCNACVDVCSASAIASQWKDGRGS-------VRVTPNLCVGCGACTTACPTGAI 381



 Score = 38.9 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 18/48 (37%)

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               A  +   +G       +   R  ID+ +C  C  C + CP  AI
Sbjct: 179 WPVHAGELAQVNGWLGAFEVKWRNRNPIDLDRCTRCNACIDVCPEGAI 226



 Score = 35.1 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 25/91 (27%), Gaps = 19/91 (20%)

Query: 28  FKAKTTINYPFEKGSTSPRFRGEHALRRYP-----NGEERCIACKLCEAICPAQAITIES 82
           F       +P   G  +       A             +RC  C  C  +CP  AI    
Sbjct: 171 FVPPMERRWPVHAGELAQVNGWLGAFEVKWRNRNPIDLDRCTRCNACIDVCPEGAID--- 227

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                        Y ID+  C     C +AC
Sbjct: 228 -----------ALYQIDLDACRDHRACVKAC 247


>gi|224369236|ref|YP_002603400.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Desulfobacterium
           autotrophicum HRM2]
 gi|223691953|gb|ACN15236.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Desulfobacterium
           autotrophicum HRM2]
          Length = 402

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 30/83 (36%), Gaps = 4/83 (4%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100
           G      +  HA          C  CK C   C   AI     P      ++T  + +D 
Sbjct: 293 GKFPKPAQEVHAAFHAVIDGTACSGCKKCTKKCQIDAILATDIPA----QKKTFVHQVDR 348

Query: 101 IKCIYCGLCQEACPVDAIVEGPN 123
            +CI CGLC   CP  AI    N
Sbjct: 349 DRCIGCGLCVGGCPEHAISMVEN 371


>gi|187929661|ref|YP_001900148.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Ralstonia pickettii 12J]
 gi|187726551|gb|ACD27716.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ralstonia
           pickettii 12J]
          Length = 719

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 9/79 (11%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ERC  C  C   CP+QA+  ++               +    C+ CGLC+  CP  AI
Sbjct: 587 NRERCTLCMACVGACPSQALRDQAE---------RPVLAMIERNCVQCGLCETTCPESAI 637

Query: 119 VEGPNFEFATETRQELYYD 137
              P    + E RQ    +
Sbjct: 638 ALVPRLNLSAEARQSATLN 656



 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 7/55 (12%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C  C  +C A AI  +                +    C+ CG C  ACP  AI
Sbjct: 334 VGCNACVDVCSASAIASQWKDGRGSVH-------VTPNLCVGCGACTTACPTGAI 381



 Score = 37.8 bits (86), Expect = 0.52,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 18/48 (37%)

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               A  +   +G       +   R  ID+ +C  C  C + CP  AI
Sbjct: 179 WPVHAGELAQVNGWLGAFEVQWRNRNPIDLDRCTRCNACIDVCPEGAI 226



 Score = 35.1 bits (79), Expect = 3.5,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 25/91 (27%), Gaps = 19/91 (20%)

Query: 28  FKAKTTINYPFEKGSTSPRFRGEHALRRYP-----NGEERCIACKLCEAICPAQAITIES 82
           F       +P   G  +       A             +RC  C  C  +CP  AI    
Sbjct: 171 FVPPMERRWPVHAGELAQVNGWLGAFEVQWRNRNPIDLDRCTRCNACIDVCPEGAID--- 227

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                        Y ID+  C     C +AC
Sbjct: 228 -----------ALYQIDLDACRDHRACVKAC 247


>gi|123446216|ref|XP_001311861.1| pyruvate:ferredoxin oxidoreductase BII [Trichomonas vaginalis G3]
 gi|121893686|gb|EAX98931.1| pyruvate:ferredoxin oxidoreductase BII [Trichomonas vaginalis G3]
          Length = 1157

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 27/83 (32%), Gaps = 12/83 (14%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCHDGTRRTVRYDI 98
            A+      E++CI C  C  +CP   I                  +  +      R  I
Sbjct: 670 IAVTVPKWDEKKCIQCNTCAIVCPHAVIRPFLLKPEEVQGLTTLKAKGKEIKDYQFRIQI 729

Query: 99  DMIKCIYCGLCQEACPVDAIVEG 121
             + C  CG C  +CP  A+   
Sbjct: 730 TPLDCTGCGTCVTSCPTKALSMT 752


>gi|15644176|ref|NP_229225.1| Fe-hydrogenase, subunit beta [Thermotoga maritima MSB8]
 gi|4981989|gb|AAD36495.1|AE001794_11 Fe-hydrogenase, subunit beta [Thermotoga maritima MSB8]
 gi|2865516|gb|AAC02685.1| Fe-hydrogenase beta subunit [Thermotoga maritima MSB8]
          Length = 626

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 30/69 (43%), Gaps = 10/69 (14%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           A ++Y    + C  C LC   CP  AIT E G            Y ID  KC+ CGLC  
Sbjct: 567 AFKKYVINPDICKGCGLCARSCPQNAITGERGKP----------YTIDQEKCVKCGLCAS 616

Query: 112 ACPVDAIVE 120
            CP  AI  
Sbjct: 617 KCPFKAIEL 625



 Score = 41.6 bits (96), Expect = 0.039,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 16/39 (41%)

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              G           +Y I+   C  CGLC  +CP +AI
Sbjct: 555 HIEGECPSGMCTAFKKYVINPDICKGCGLCARSCPQNAI 593


>gi|150017381|ref|YP_001309635.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium
           beijerinckii NCIMB 8052]
 gi|149903846|gb|ABR34679.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium
           beijerinckii NCIMB 8052]
          Length = 282

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 29/88 (32%), Gaps = 11/88 (12%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P           G  A        + C  CK+CE  C   AI++               
Sbjct: 138 CPNNCVKAPISDLGFLAQNEPKVEADMCKGCKICERTCKVDAISMVHKKAV--------- 188

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPN 123
             ID  KCI CG C +ACP  A+     
Sbjct: 189 --IDYDKCISCGQCVKACPFKAMKLEKE 214


>gi|254508907|ref|ZP_05121015.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus 16]
 gi|219548146|gb|EED25163.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus 16]
          Length = 553

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 9/102 (8%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
              + C  C  C A+CP +A+  +           +         C+ CGLC++ACP +A
Sbjct: 415 CESKDCTLCMSCVAVCPTRALHTDGT---------SPSLQFVEQDCVQCGLCEKACPENA 465

Query: 118 IVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
           +   P   + ++TRQ      E       R         + D
Sbjct: 466 LSLTPRMNWDSQTRQNAVVLHEEKAAECIRCHKPFAPQSMID 507



 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 6/54 (11%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           C+ C   CPA A++ E   +         R +I+   C   G C  ACP +AI 
Sbjct: 186 CERCVDACPAGALSSEGSDKTGH------RIEINPYLCQGVGTCATACPTEAIH 233


>gi|117921346|ref|YP_870538.1| FAD linked oxidase domain-containing protein [Shewanella sp. ANA-3]
 gi|117613678|gb|ABK49132.1| FAD linked oxidase domain protein [Shewanella sp. ANA-3]
          Length = 934

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 9/93 (9%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           E +     I  +         +     D  + KCI CG C++ CP  A+   P    AT 
Sbjct: 509 EGLLNPGVILNDDSTVHVKNIKPCPVVDDFVDKCIECGFCEKTCPTSALNFSPRQRIATL 568

Query: 130 TRQELYYDKERLLNNGDRWESEIVRNIVTDSPY 162
            R+      ERL  +GD+        +  D+ Y
Sbjct: 569 -RE-----IERLEQSGDK---AAAEKMRADAKY 592



 Score = 38.2 bits (87), Expect = 0.41,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 26/76 (34%), Gaps = 18/76 (23%)

Query: 57  PNGEERCIACKLCEAICPAQAITIES-----------------GPRCHDGTRRTVRYDID 99
            +  ++CI C  CE  CP  A+                          +  R   +YD+ 
Sbjct: 536 DDFVDKCIECGFCEKTCPTSALNFSPRQRIATLREIERLEQSGDKAAAEKMRADAKYDVI 595

Query: 100 MIKCIYCGLCQEACPV 115
              C  C LC  ACPV
Sbjct: 596 -DTCAACQLCTIACPV 610


>gi|297625386|ref|YP_003687149.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase:4Fe-4S
           ferredoxin, iron-sulfur binding:Aromatic-ring
           hydroxylase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
 gi|296921151|emb|CBL55698.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase:4Fe-4S
           ferredoxin, iron-sulfur binding:Aromatic-ring
           hydroxylase [Propionibacterium freudenreichii subsp.
           shermanii CIRM-BIA1]
          Length = 543

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 23/62 (37%), Gaps = 9/62 (14%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C  C  C   CP  AI             +  RY  D  KC  CG C E CPV AI   
Sbjct: 490 NCFECDGCYGSCPEDAIVKLG---------KGHRYRFDYDKCTGCGTCFEQCPVHAIEMI 540

Query: 122 PN 123
           P 
Sbjct: 541 PE 542


>gi|224368543|ref|YP_002602706.1| HdrA3 [Desulfobacterium autotrophicum HRM2]
 gi|223691259|gb|ACN14542.1| HdrA3 [Desulfobacterium autotrophicum HRM2]
          Length = 418

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 6/62 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              RCI C  CE +CP  A++                + +D+  C  CG C   CP  AI
Sbjct: 115 DPGRCILCGRCEKVCPENAVS------PTICHALPRTFLVDINACTGCGKCVAVCPTHAI 168

Query: 119 VE 120
             
Sbjct: 169 DL 170



 Score = 37.4 bits (85), Expect = 0.64,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 15/30 (50%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
            ID  +CI CG C++ CP +A+        
Sbjct: 113 RIDPGRCILCGRCEKVCPENAVSPTICHAL 142


>gi|297195797|ref|ZP_06913195.1| ferredoxin-NADP+ reductase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|297152954|gb|EFH32068.1| ferredoxin-NADP+ reductase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 452

 Score = 53.2 bits (126), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           + C +   C A+CP   I      R       T    ID   CI CG C +ACPVDAI 
Sbjct: 7   QTCCSDATCVAVCPVNCIHPTPEERA---FGSTEMLYIDPRSCIDCGACADACPVDAIF 62


>gi|281412804|ref|YP_003346883.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10]
 gi|281373907|gb|ADA67469.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10]
          Length = 626

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 30/69 (43%), Gaps = 10/69 (14%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           A ++Y    + C  C LC   CP  AIT E G            Y ID  KC+ CGLC  
Sbjct: 567 AFKKYVINPDICKGCGLCARSCPQNAITGERGKP----------YTIDQEKCVKCGLCAS 616

Query: 112 ACPVDAIVE 120
            CP  AI  
Sbjct: 617 KCPFKAIEL 625



 Score = 41.2 bits (95), Expect = 0.041,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 16/39 (41%)

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              G           +Y I+   C  CGLC  +CP +AI
Sbjct: 555 HIEGECPSGMCTAFKKYVINPDICKGCGLCARSCPQNAI 593


>gi|229588699|ref|YP_002870818.1| putative electron transpor-like protein [Pseudomonas fluorescens
           SBW25]
 gi|229360565|emb|CAY47422.1| putative electron transpor-related protein [Pseudomonas fluorescens
           SBW25]
          Length = 387

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 29/78 (37%), Gaps = 10/78 (12%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
              RGE   +     E  CI C  C   CP  AI   +           + + + + +C 
Sbjct: 63  DTHRGEAPAQVAYIREAECIGCTKCIQACPVDAIVGAAK----------LMHTVIIDECT 112

Query: 105 YCGLCQEACPVDAIVEGP 122
            C LC   CPVD I   P
Sbjct: 113 GCDLCVAPCPVDCIEMHP 130


>gi|254830988|ref|ZP_05235643.1| hypothetical protein Lmon1_06498 [Listeria monocytogenes 10403S]
          Length = 995

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 3/85 (3%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E+      +  + +   Y    ++CI C  C   C    +             R +  D 
Sbjct: 124 ERPYREKGYLNDFSHPFYRYDPDQCILCGRCVEACQQVQVNETLSIDWERSQPRVIWDDD 183

Query: 99  DMIK---CIYCGLCQEACPVDAIVE 120
                  C+ CGLC   CP +A++E
Sbjct: 184 RPANLSSCVSCGLCATVCPCNALME 208



 Score = 40.5 bits (93), Expect = 0.074,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 9/69 (13%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCI 104
           R   N    C  C      C+     + + +E   R +             Y  D  +CI
Sbjct: 90  RILENHLLYCTVCDNNNGNCKVHNTTELLGVEKQERPYREKGYLNDFSHPFYRYDPDQCI 149

Query: 105 YCGLCQEAC 113
            CG C EAC
Sbjct: 150 LCGRCVEAC 158


>gi|21228665|ref|NP_634587.1| ferredoxin [Methanosarcina mazei Go1]
 gi|20907167|gb|AAM32259.1| Ferredoxin [Methanosarcina mazei Go1]
          Length = 369

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 11/69 (15%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E+CI C  C  ICP  A ++E                I+   CI CG C E CP +AI  
Sbjct: 194 EKCIGCGNCVEICPVGAASLEGD-----------VSRINPGVCISCGQCMEVCPENAIDL 242

Query: 121 GPNFEFATE 129
               +    
Sbjct: 243 NWEQDIPEF 251



 Score = 41.6 bits (96), Expect = 0.035,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 19/57 (33%), Gaps = 4/57 (7%)

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVRY----DIDMIKCIYCGLCQEACPVDA 117
             K         AI   +        ++   Y     +   KCI CG C E CPV A
Sbjct: 154 HFKGHIMAGFGGAIKNLAMGCAPAAGKKDQHYPTSPHVVEEKCIGCGNCVEICPVGA 210


>gi|282862944|ref|ZP_06272004.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Streptomyces
           sp. ACTE]
 gi|282561926|gb|EFB67468.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Streptomyces
           sp. ACTE]
          Length = 548

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           + C +   C A+CP   I      R       T    ID   CI CG C +ACPVDAI 
Sbjct: 7   QTCCSDATCIAVCPVNCIHPTPEERD---FGSTEMLHIDPKSCIDCGACADACPVDAIF 62


>gi|218288430|ref|ZP_03492720.1| formate dehydrogenase, alpha subunit [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218241403|gb|EED08577.1| formate dehydrogenase, alpha subunit [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 994

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 3/83 (3%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD--- 97
             T   +  + +   Y    ++CI C  C   C    ++            R +  +   
Sbjct: 136 PFTPKPYEVDMSNPFYRYDPQQCILCGRCVEACQNLQVSEVLSIAWDREVPRVIWDNDVP 195

Query: 98  IDMIKCIYCGLCQEACPVDAIVE 120
           I+   C+ CG C   CP +A++E
Sbjct: 196 INESSCVSCGHCVTVCPTNALME 218


>gi|189499447|ref|YP_001958917.1| NADH dehydrogenase (quinone) [Chlorobium phaeobacteroides BS1]
 gi|189494888|gb|ACE03436.1| NADH dehydrogenase (quinone) [Chlorobium phaeobacteroides BS1]
          Length = 594

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 13/97 (13%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
             L+Y F+ +   +   ++            L  +   ++ C  C +CE  CP  AIT  
Sbjct: 508 TTLKY-FRDEYVAHVEEKRCPAGVC----KGLITHTIMQDTCTGCSICERYCPVDAITGV 562

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                    ++   + ID   C+ CG+C E C  DAI
Sbjct: 563 --------IKKPESWVIDHDLCVNCGMCVEVCNSDAI 591


>gi|299066025|emb|CBJ37206.1| putative 4Fe-4S ferredoxin [Ralstonia solanacearum CMR15]
          Length = 736

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 9/79 (11%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              RC  C  C + CP+QA+  ++               +    C+ CGLC   CP DAI
Sbjct: 604 DRARCTLCMACVSACPSQALRDQAE---------RPVLSMIEHNCVQCGLCDTTCPEDAI 654

Query: 119 VEGPNFEFATETRQELYYD 137
              P    + E RQ +  +
Sbjct: 655 ALVPRLNLSAEARQPVVLN 673



 Score = 40.5 bits (93), Expect = 0.088,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 7/55 (12%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C  C  +C A AI  +                +    C+ CG C  ACP  A+
Sbjct: 351 VGCDACVRVCSAAAIASQWKDGRGSVH-------VTPNLCVGCGACTTACPTGAL 398



 Score = 38.2 bits (87), Expect = 0.38,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 19/48 (39%)

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               A      SG       +   R  ID+ +C +C  C + CP DAI
Sbjct: 196 WPIQAGERVQVSGWLGVFEVQWQSRNPIDLDRCTHCNACIDVCPEDAI 243



 Score = 35.1 bits (79), Expect = 3.5,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 36/118 (30%), Gaps = 21/118 (17%)

Query: 30  AKTTINYPF---EKGSTSPRFRGEHALRRYPN--GEERCIACKLCEAICPAQAITIESGP 84
                 +P    E+   S          +  N    +RC  C  C  +CP  AI      
Sbjct: 190 PPMARRWPIQAGERVQVSGWLGVFEVQWQSRNPIDLDRCTHCNACIDVCPEDAID----- 244

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEAC-PVDAIVEGPNFEFATET-RQELYYDKER 140
                      Y ID+  C     C +AC    AI  G      T + R +L +D   
Sbjct: 245 ---------TLYQIDLEACRDHRDCVKACGEAMAIDFGRLDAPQTASGRFDLIFDLND 293


>gi|297625916|ref|YP_003687679.1| Pyruvate:ferredoxin (Flavodoxin) oxidoreductase [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296921681|emb|CBL56238.1| Pyruvate:ferredoxin (Flavodoxin) oxidoreductase [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 1239

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 29/94 (30%), Gaps = 16/94 (17%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTR----------------RTVRYDIDMI 101
             E  CI C  C   CP  AI I+  P                         +   +   
Sbjct: 705 WDESLCIDCGKCAITCPHAAIRIKVAPEAEFADAPEGFKSKNYRDRKLAGHRLVVQVAPD 764

Query: 102 KCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            C  CG+C + CP  +  E  +     E R+E  
Sbjct: 765 DCTGCGICVDVCPAKSKTEVKHKSLNMEPRREHL 798


>gi|260437208|ref|ZP_05791024.1| hydrogenase subunit [Butyrivibrio crossotus DSM 2876]
 gi|292810521|gb|EFF69726.1| hydrogenase subunit [Butyrivibrio crossotus DSM 2876]
          Length = 481

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 25/71 (35%), Gaps = 6/71 (8%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCG 107
                   +C  C +C   CP  AI     P         + YD      ID  KCI CG
Sbjct: 121 HHSKIDGSKCKECGMCAKACPYNAIAHLKRPCKFSCPVDAITYDEYGISVIDEKKCIRCG 180

Query: 108 LCQEACPVDAI 118
            C   CP  AI
Sbjct: 181 QCIHKCPFGAI 191


>gi|20092258|ref|NP_618333.1| hypothetical protein MA3446 [Methanosarcina acetivorans C2A]
 gi|19917495|gb|AAM06813.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 360

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 11/68 (16%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           +CI C  C  ICP  A ++E                ID   CI CG C E CP  AI   
Sbjct: 186 KCIGCGRCVEICPVGAASLEGD-----------VSRIDPGICISCGQCMEVCPEGAIDIN 234

Query: 122 PNFEFATE 129
              +    
Sbjct: 235 WEEDIPEF 242



 Score = 41.2 bits (95), Expect = 0.044,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 19/57 (33%), Gaps = 4/57 (7%)

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVRY----DIDMIKCIYCGLCQEACPVDA 117
             K         AI   +        ++   Y     +   KCI CG C E CPV A
Sbjct: 145 HFKGHIMAGFGGAIKNLAMGCAPAAGKKDQHYPTSPHVVEAKCIGCGRCVEICPVGA 201


>gi|322650604|gb|EFY47009.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
          Length = 124

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 25/65 (38%)

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRN 155
           +  ++ +CI+CG C+E CP  AI     +E A   +++        L N           
Sbjct: 12  WQFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRPFAVQ 71

Query: 156 IVTDS 160
              D 
Sbjct: 72  KEIDY 76


>gi|307243639|ref|ZP_07525782.1| 4Fe-4S binding domain protein [Peptostreptococcus stomatis DSM
           17678]
 gi|306493008|gb|EFM65018.1| 4Fe-4S binding domain protein [Peptostreptococcus stomatis DSM
           17678]
          Length = 516

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQ 110
              ++ CI C  C+A+CP  AI     P             +  R  ID  KC+ CG+C 
Sbjct: 147 FIDQDLCIKCGRCKAVCPYDAIAKLERPCARACGMDAIESDKYGRASIDYDKCVSCGVCI 206

Query: 111 EACPVDAI 118
            +CP  AI
Sbjct: 207 SSCPFGAI 214



 Score = 38.2 bits (87), Expect = 0.35,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 13/60 (21%)

Query: 61  ERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C  C  + C  +CP +A+++ +G              ID   CI CG C+  CP DAI
Sbjct: 120 DICRGCLARPCVEVCPKKAVSMVNGKSF-----------IDQDLCIKCGRCKAVCPYDAI 168


>gi|282883119|ref|ZP_06291718.1| Fe-hydrogenase large subunit family protein [Peptoniphilus
           lacrimalis 315-B]
 gi|281296931|gb|EFA89428.1| Fe-hydrogenase large subunit family protein [Peptoniphilus
           lacrimalis 315-B]
          Length = 505

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQEA 112
            +++CI C  C   CP  AI +   P       +        R DID  KC+ CG C   
Sbjct: 146 DKDKCIRCGRCHEACPYNAIVMYDRPCAAVCGVKAIGSDDFDRADIDQDKCVACGRCIAT 205

Query: 113 CPVDAI 118
           CP  AI
Sbjct: 206 CPFGAI 211



 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 23/65 (35%), Gaps = 5/65 (7%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-----DIDMIKCIYCGLCQEACPVDA 117
           C AC               + P  +      +        ID  KCI CG C EACP +A
Sbjct: 105 CEACPTKSYFVTNNCRKCIAHPCINVCPVNAISMGKDSTIIDKDKCIRCGRCHEACPYNA 164

Query: 118 IVEGP 122
           IV   
Sbjct: 165 IVMYD 169


>gi|16804624|ref|NP_466109.1| hypothetical protein lmo2586 [Listeria monocytogenes EGD-e]
 gi|224503621|ref|ZP_03671928.1| hypothetical protein LmonFR_14143 [Listeria monocytogenes FSL
           R2-561]
 gi|16412074|emb|CAD00664.1| lmo2586 [Listeria monocytogenes EGD-e]
          Length = 995

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 3/85 (3%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E+      +  + +   Y    ++CI C  C   C    +             R +  D 
Sbjct: 124 ERPYREKGYLNDFSHPFYRYDPDQCILCGRCVEACQQVQVNETLSIDWERSQPRVIWDDD 183

Query: 99  DMIK---CIYCGLCQEACPVDAIVE 120
                  C+ CGLC   CP +A++E
Sbjct: 184 RPANLSSCVSCGLCATVCPCNALME 208



 Score = 40.5 bits (93), Expect = 0.078,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 9/69 (13%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCI 104
           R   N    C  C      C+     + + +E   R +             Y  D  +CI
Sbjct: 90  RILENHLLYCTVCDNNNGNCKVHNTTELLGVEKQERPYREKGYLNDFSHPFYRYDPDQCI 149

Query: 105 YCGLCQEAC 113
            CG C EAC
Sbjct: 150 LCGRCVEAC 158


>gi|258510840|ref|YP_003184274.1| formate dehydrogenase, alpha subunit [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257477566|gb|ACV57885.1| formate dehydrogenase, alpha subunit [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 994

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 3/83 (3%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD--- 97
             T   +  + +   Y    ++CI C  C   C    ++            R +  +   
Sbjct: 136 PFTPKPYEVDMSNPFYRYDPQQCILCGRCVEACQNLQVSEVLSIAWDREVPRVIWDNDVP 195

Query: 98  IDMIKCIYCGLCQEACPVDAIVE 120
           I+   C+ CG C   CP +A++E
Sbjct: 196 INESSCVSCGHCVTVCPTNALME 218


>gi|88797367|ref|ZP_01112957.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Reinekea sp. MED297]
 gi|88780236|gb|EAR11421.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Reinekea sp. MED297]
          Length = 547

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 30/96 (31%), Gaps = 5/96 (5%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVR 95
           P E+  +           +      RC +C  C        A   ++      G    + 
Sbjct: 455 PAERLDSFDEIVQGLNDEQAHFEASRCYSCGTCFECDGCFGACPEQAITILGTG----LG 510

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           Y ID  +C  CG C   CP  AI   P  E   E  
Sbjct: 511 YRIDYDRCTGCGACVLQCPTHAISLFPVTELEQEDH 546


>gi|258514612|ref|YP_003190834.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778317|gb|ACV62211.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 368

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 13/69 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA- 117
            E++CI C  C  +CP QAIT+                +ID+ KCI CG C   CPV A 
Sbjct: 191 DEDKCIGCGGCSEVCPEQAITMSEMKA-----------NIDLDKCIGCGECLTVCPVKAN 239

Query: 118 -IVEGPNFE 125
            I    + E
Sbjct: 240 GIDWQTDLE 248



 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 17/42 (40%)

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           +   P      +   +  +D  KCI CG C E CP  AI   
Sbjct: 172 MGGAPAIGKKEQHGTKIVVDEDKCIGCGGCSEVCPEQAITMS 213


>gi|116873952|ref|YP_850733.1| formate dehydrogenase, alpha subunit [Listeria welshimeri serovar
           6b str. SLCC5334]
 gi|116742830|emb|CAK21954.1| formate dehydrogenase, alpha subunit [Listeria welshimeri serovar
           6b str. SLCC5334]
          Length = 995

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 3/85 (3%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E+      +  + +   Y    ++CI C  C   C    +             R +  D 
Sbjct: 124 ERPYREKGYLNDFSHPFYRYDPDQCILCGRCVEACQQVQVNETLSIDWERSQPRVIWDDD 183

Query: 99  DMIK---CIYCGLCQEACPVDAIVE 120
                  C+ CGLC   CP +A++E
Sbjct: 184 RPANLSSCVSCGLCATVCPCNALME 208



 Score = 40.5 bits (93), Expect = 0.079,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 9/69 (13%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCI 104
           R   N    C  C      C+     + + +E   R +             Y  D  +CI
Sbjct: 90  RILENHLLYCTVCDNNNGNCKVHNTTELLGVEKQERPYREKGYLNDFSHPFYRYDPDQCI 149

Query: 105 YCGLCQEAC 113
            CG C EAC
Sbjct: 150 LCGRCVEAC 158


>gi|120405980|ref|YP_955809.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Mycobacterium vanbaalenii PYR-1]
 gi|119958798|gb|ABM15803.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Mycobacterium vanbaalenii PYR-1]
          Length = 559

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 3/64 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + C +   C   CP   I          G        ID + C+ CG C  ACP
Sbjct: 1   MPHVITQSCCSDGSCVYACPVNCIHPTPDE---PGFATAEMLYIDPVACVDCGACVSACP 57

Query: 115 VDAI 118
           V AI
Sbjct: 58  VGAI 61



 Score = 35.5 bits (80), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
              +    C   G C  ACPV+ I   P+ E    T + LY D 
Sbjct: 1   MPHVITQSCCSDGSCVYACPVNCIHPTPD-EPGFATAEMLYIDP 43


>gi|303243651|ref|ZP_07329992.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
 gi|302485893|gb|EFL48816.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
          Length = 426

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 14/113 (12%)

Query: 9   SFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKL 68
           S  +L EFV       + + K         E      R+R       YP    +CI+C  
Sbjct: 4   SIWYLYEFVR------KKWIKKFLDAKTEEEIVIAPKRYRKVPPTVVYPE---KCISCGA 54

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           C+  CP+ AI + + P+ +         +ID+  CI CG C E+CP   +  G
Sbjct: 55  CKGSCPSFAIELVNNPKYNK-----KIPEIDVGSCISCGNCVESCPTKVLEIG 102



 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 40/105 (38%), Gaps = 17/105 (16%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           + Y   E +CI C++C  +C        S          T    I+   C+ CGLC   C
Sbjct: 310 KCYIIDENKCIGCRICYKVCNVDNAISISSE--------TRLPYINPEYCVRCGLCYREC 361

Query: 114 PVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158
           PVDAI      E          + + +L    D +ES I  ++  
Sbjct: 362 PVDAIGLTKTEE---------VFGRYKLRKIRDEFESIIRSDLEE 397



 Score = 38.9 bits (89), Expect = 0.22,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 12/85 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            EE C+ C  C+ +CP  AI               V + ID   CI C  C +ACPV   
Sbjct: 124 DEELCVNCSSCKLVCPVDAIDYNG-----------VSHVIDKNICIGCNRCIDACPVIDA 172

Query: 119 VEGPNFEFATETRQELYYDK-ERLL 142
           ++  + +   E   +  Y K ERLL
Sbjct: 173 IKTYDEKILKEKIDKSQYLKFERLL 197



 Score = 38.5 bits (88), Expect = 0.30,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 16/61 (26%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI+C  C  +CP                      + ++++CI CG C E CP +A+  G 
Sbjct: 257 CISCGNCVDVCP----------------GYIDLKNYNVVECIKCGECIEVCPTNAMRIGE 300

Query: 123 N 123
            
Sbjct: 301 I 301



 Score = 37.4 bits (85), Expect = 0.74,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 19/48 (39%)

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
            A T E         R+     +   KCI CG C+ +CP  AI    N
Sbjct: 22  DAKTEEEIVIAPKRYRKVPPTVVYPEKCISCGACKGSCPSFAIELVNN 69


>gi|317497525|ref|ZP_07955844.1| 4Fe-4S binding domain-containing protein [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316895208|gb|EFV17371.1| 4Fe-4S binding domain-containing protein [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 495

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDG------TRRTVRYDIDMIKCIYCGL 108
                +E+CI C  C+ +CP  AI     P  +        T    R  I+  KC+ CG+
Sbjct: 142 YSYIDQEKCIKCGQCKKVCPYGAIYERKRPCANACGVGAIETDYAGRAKINPDKCVSCGM 201

Query: 109 CQEACPVDAI 118
           C   CP  AI
Sbjct: 202 CMVNCPFGAI 211



 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 5/68 (7%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-----IDMIKCIYCGLCQEACP 114
              C  CK    I   Q     + P      ++ + +      ID  KCI CG C++ CP
Sbjct: 102 PSACNECKEKAFIVGEQCQGCMAHPCMEVCPKKAISFKDGYSYIDQEKCIKCGQCKKVCP 161

Query: 115 VDAIVEGP 122
             AI E  
Sbjct: 162 YGAIYERK 169


>gi|317509391|ref|ZP_07967010.1| 4Fe-4S binding domain-containing protein [Segniliparus rugosus ATCC
           BAA-974]
 gi|316252314|gb|EFV11765.1| 4Fe-4S binding domain-containing protein [Segniliparus rugosus ATCC
           BAA-974]
          Length = 548

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 22/64 (34%), Gaps = 3/64 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + C +   C   CP   I                   ID   C+ CG C +ACP
Sbjct: 1   MPHVVTQSCCSDGSCVFACPVNCIHPTPDEPD---FLTAEMLHIDPAACVDCGACVDACP 57

Query: 115 VDAI 118
           V+AI
Sbjct: 58  VEAI 61



 Score = 33.9 bits (76), Expect = 6.7,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 11/21 (52%)

Query: 103 CIYCGLCQEACPVDAIVEGPN 123
           C   G C  ACPV+ I   P+
Sbjct: 9   CCSDGSCVFACPVNCIHPTPD 29


>gi|311069204|ref|YP_003974127.1| YrhE protein [Bacillus atrophaeus 1942]
 gi|310869721|gb|ADP33196.1| YrhE [Bacillus atrophaeus 1942]
          Length = 979

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 4/91 (4%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+           + +   Y     +CIAC  C  +C    +             R
Sbjct: 123 HQKYPYTPKEDPSCAV-DMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWERERPR 181

Query: 93  TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120
            +      I+   C+ CG C   CP +A++E
Sbjct: 182 VIWDQGVAINESSCVSCGQCVTVCPCNALME 212


>gi|312127263|ref|YP_003992137.1| pyruvate/ketoisovalerate oxidoreductase subunit gamma
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311777282|gb|ADQ06768.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 339

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E+CI C LCE  CP          R  +G  +      D   C  C  C + CP  A+VE
Sbjct: 252 EKCINCGLCETTCPD--YVFVWDRRIENGKLKMFNLGPDYQYCKGCLRCVDVCPTAALVE 309

Query: 121 GPNFEF 126
           G   E+
Sbjct: 310 GIEREY 315


>gi|288572802|ref|ZP_06391159.1| NADH dehydrogenase (quinone) [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288568543|gb|EFC90100.1| NADH dehydrogenase (quinone) [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 589

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 10/66 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L  Y    E+CI C  C   CP  AI+ E              + ID   CI CG C+ +
Sbjct: 531 LIHYIIDPEKCIGCTKCAKNCPVDAISGEIKKP----------HVIDDSICIRCGKCKVS 580

Query: 113 CPVDAI 118
           CPV AI
Sbjct: 581 CPVGAI 586



 Score = 41.2 bits (95), Expect = 0.048,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 18/49 (36%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           +         I             + Y ID  KCI C  C + CPVDAI
Sbjct: 508 KYFKDEYMAHIVDHRCPATVCPSLIHYIIDPEKCIGCTKCAKNCPVDAI 556


>gi|88859825|ref|ZP_01134464.1| electron transport complex protein RnfC [Pseudoalteromonas tunicata
           D2]
 gi|88817819|gb|EAR27635.1| electron transport complex protein RnfC [Pseudoalteromonas tunicata
           D2]
          Length = 872

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/128 (20%), Positives = 44/128 (34%), Gaps = 6/128 (4%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
           T+  P  K +       +   + +   E+ CI C  C   CPA  +  +           
Sbjct: 348 TVRVPVIKTTNCILAPSQVE-QPFAGDEKACIRCSACADACPAS-LLPQQLQWFAKSQEF 405

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEI 152
                 ++  CI CG C   CP   I     +  A    +E   +K +     +R+E   
Sbjct: 406 DKLEQHNLFDCIECGACAFVCP-SEIPLVQYYRVAKVQIKEQKAEKAKAERAKERFE--- 461

Query: 153 VRNIVTDS 160
           +RN   + 
Sbjct: 462 IRNRRLEK 469


>gi|114320814|ref|YP_742497.1| putative glutamate synthase (NADPH) small subunit [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114227208|gb|ABI57007.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 648

 Score = 52.8 bits (125), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 4/59 (6%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           C  C  C   CP  A+          G      Y     +CI C +C++ CP   I  G
Sbjct: 591 CFECDNCLIYCPQDAVERVPKKERATGRYVQTDYT----RCIGCHICRDVCPTGYIEMG 645


>gi|290892750|ref|ZP_06555742.1| formate dehydrogenase [Listeria monocytogenes FSL J2-071]
 gi|290557810|gb|EFD91332.1| formate dehydrogenase [Listeria monocytogenes FSL J2-071]
          Length = 995

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 3/85 (3%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E+      +  + +   Y    ++CI C  C   C    +             R +  D 
Sbjct: 124 ERPYREKGYLNDFSHPFYRYDPDQCILCGRCVEACQQVQVNETLSIDWERSQPRVIWDDD 183

Query: 99  DMIK---CIYCGLCQEACPVDAIVE 120
                  C+ CGLC   CP +A++E
Sbjct: 184 RPANLSSCVSCGLCATVCPCNALME 208



 Score = 40.5 bits (93), Expect = 0.082,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 9/69 (13%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCI 104
           R   N    C  C      C+     + + +E   R +             Y  D  +CI
Sbjct: 90  RILENHLLYCTVCDNNNGNCKVHNTTELLGVEKQERPYREKGYLNDFSHPFYRYDPDQCI 149

Query: 105 YCGLCQEAC 113
            CG C EAC
Sbjct: 150 LCGRCVEAC 158


>gi|227499429|ref|ZP_03929540.1| pyruvate synthase [Anaerococcus tetradius ATCC 35098]
 gi|227218491|gb|EEI83734.1| pyruvate synthase [Anaerococcus tetradius ATCC 35098]
          Length = 1175

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/117 (26%), Positives = 43/117 (36%), Gaps = 20/117 (17%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTR- 91
           FE G+T    RG  AL       + CI C  C  +CP   I     T E      +G   
Sbjct: 665 FESGTTQYEKRG-IALTVPEWQIDNCIQCNQCSYVCPHAVIRPFLVTEEEKANAPEGFTT 723

Query: 92  ----------RTVRYDIDMIKCIYCGLCQEAC--PVDAIVEGPNFEFATETRQELYY 136
                        R  +  + C  CG C + C  P  A++  P FE   E  ++ +Y
Sbjct: 724 KKAIGKGMDGYEFRIQVSPLDCTGCGNCADVCPAPKKALLMKP-FEEEVEKEKDNWY 779


>gi|210615774|ref|ZP_03290755.1| hypothetical protein CLONEX_02973 [Clostridium nexile DSM 1787]
 gi|210150110|gb|EEA81119.1| hypothetical protein CLONEX_02973 [Clostridium nexile DSM 1787]
          Length = 502

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQ 110
              +E+CI C  C+++CP  AI+ +  P          G+ +  R  ID  KC+ CG+C 
Sbjct: 147 YIDQEKCIKCGKCKSVCPYDAISKKERPCAKACGVNAIGSDKMGRAHIDNDKCVSCGMCM 206

Query: 111 EACPVDAI 118
            +CP  AI
Sbjct: 207 VSCPFGAI 214



 Score = 41.2 bits (95), Expect = 0.045,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 13/64 (20%)

Query: 57  PNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
               + C  C    C  +CP  AI+++ G           R  ID  KCI CG C+  CP
Sbjct: 116 YEVSDMCKGCVAHPCREVCPVGAISMKKG-----------RSYIDQEKCIKCGKCKSVCP 164

Query: 115 VDAI 118
            DAI
Sbjct: 165 YDAI 168


>gi|167766696|ref|ZP_02438749.1| hypothetical protein CLOSS21_01202 [Clostridium sp. SS2/1]
 gi|167711633|gb|EDS22212.1| hypothetical protein CLOSS21_01202 [Clostridium sp. SS2/1]
 gi|291558362|emb|CBL37162.1| Iron only hydrogenase large subunit, C-terminal domain
           [butyrate-producing bacterium SSC/2]
          Length = 495

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDG------TRRTVRYDIDMIKCIYCGL 108
                +E+CI C  C+ +CP  AI     P  +        T    R  I+  KC+ CG+
Sbjct: 142 YSYIDQEKCIKCGQCKKVCPYGAIYERKRPCANACGVGAIETDYAGRAKINPDKCVSCGM 201

Query: 109 CQEACPVDAI 118
           C   CP  AI
Sbjct: 202 CMVNCPFGAI 211



 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 5/68 (7%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-----IDMIKCIYCGLCQEACP 114
              C  CK    I   Q     + P      ++ + +      ID  KCI CG C++ CP
Sbjct: 102 PSACNECKEKAFIVGEQCQGCMAHPCMEVCPKKAISFKDGYSYIDQEKCIKCGQCKKVCP 161

Query: 115 VDAIVEGP 122
             AI E  
Sbjct: 162 YGAIYERK 169


>gi|149191926|ref|ZP_01870158.1| iron-sulfur cluster-binding protein [Vibrio shilonii AK1]
 gi|148834231|gb|EDL51236.1| iron-sulfur cluster-binding protein [Vibrio shilonii AK1]
          Length = 553

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 9/75 (12%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ++C  C  C A+CP +A+  +               D     CI CG+C++ACP  A+  
Sbjct: 418 DKCTLCMACVAVCPTKALHNDGDRPA---------LDFIEQDCIQCGMCEKACPESALSL 468

Query: 121 GPNFEFATETRQELY 135
                + +E+R+   
Sbjct: 469 TQRINWDSESRRSAV 483



 Score = 40.5 bits (93), Expect = 0.072,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 6/54 (11%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           C+ C   CPA A++ E   +         + +I+   C   G C  ACP +AI 
Sbjct: 186 CERCVDACPAGALSSEGNDKIGH------KIEINPYLCQGVGTCATACPTEAIH 233



 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 7/23 (30%), Positives = 9/23 (39%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIV 119
           +    KC  C  C   CP  A+ 
Sbjct: 414 ECATDKCTLCMACVAVCPTKALH 436



 Score = 34.3 bits (77), Expect = 5.3,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR--YDIDMIKCIYCG 107
           + CI C +CE  CP  A+++         +RR+    ++    +C+ CG
Sbjct: 449 QDCIQCGMCEKACPESALSLTQRINWDSESRRSAVALHEEKAAECLRCG 497


>gi|284803026|ref|YP_003414891.1| hypothetical protein LM5578_2783 [Listeria monocytogenes 08-5578]
 gi|284996167|ref|YP_003417935.1| hypothetical protein LM5923_2732 [Listeria monocytogenes 08-5923]
 gi|284058588|gb|ADB69529.1| hypothetical protein LM5578_2783 [Listeria monocytogenes 08-5578]
 gi|284061634|gb|ADB72573.1| hypothetical protein LM5923_2732 [Listeria monocytogenes 08-5923]
          Length = 995

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 3/85 (3%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E+      +  + +   Y    ++CI C  C   C    +             R +  D 
Sbjct: 124 ERPYREKGYLNDFSHPFYRYDPDQCILCGRCVEACQQVQVNETLSIDWERSQPRVIWDDD 183

Query: 99  DMIK---CIYCGLCQEACPVDAIVE 120
                  C+ CGLC   CP +A++E
Sbjct: 184 RPANLSSCVSCGLCATVCPCNALME 208



 Score = 40.5 bits (93), Expect = 0.084,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 9/69 (13%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCI 104
           R   N    C  C      C+     + + +E   R +             Y  D  +CI
Sbjct: 90  RILENHLLYCTVCDNNNGNCKVHNTTELLGVEKQERPYREKGYLNDFSHPFYRYDPDQCI 149

Query: 105 YCGLCQEAC 113
            CG C EAC
Sbjct: 150 LCGRCVEAC 158


>gi|224500458|ref|ZP_03668807.1| hypothetical protein LmonF1_12634 [Listeria monocytogenes Finland
           1988]
          Length = 995

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 3/85 (3%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E+      +  + +   Y    ++CI C  C   C    +             R +  D 
Sbjct: 124 ERPYREKGYLNDFSHPFYRYDPDQCILCGRCVEACQQVQVNETLSIDWERSQPRVIWDDD 183

Query: 99  DMIK---CIYCGLCQEACPVDAIVE 120
                  C+ CGLC   CP +A++E
Sbjct: 184 RPANLSSCVSCGLCATVCPCNALME 208



 Score = 40.5 bits (93), Expect = 0.085,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 9/69 (13%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCI 104
           R   N    C  C      C+     + + +E   R +             Y  D  +CI
Sbjct: 90  RILENHLLYCTVCDNNNGNCKVHNTTELLGVEKQERPYREKGYLNDFSHPFYRYDPDQCI 149

Query: 105 YCGLCQEAC 113
            CG C EAC
Sbjct: 150 LCGRCVEAC 158


>gi|164686831|ref|ZP_02210859.1| hypothetical protein CLOBAR_00427 [Clostridium bartlettii DSM
           16795]
 gi|164604221|gb|EDQ97686.1| hypothetical protein CLOBAR_00427 [Clostridium bartlettii DSM
           16795]
          Length = 274

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 16/89 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++CI C LC+  C    I +                 I  + CI CG C   CPV A+
Sbjct: 4   DRDKCIGCTLCKQDCIVSDIEMIDKKAH-----------IRNLTCIKCGHCIAICPVKAV 52

Query: 119 VEGPNFEFA-----TETRQELYYDKERLL 142
                 E++        +++   D ++L+
Sbjct: 53  SCDDEEEYSMEEVIPYEKEDFTIDADKLM 81


>gi|47096769|ref|ZP_00234352.1| formate dehydrogenase, alpha subunit [Listeria monocytogenes str.
           1/2a F6854]
 gi|254900960|ref|ZP_05260884.1| formate dehydrogenase Alpha subunit [Listeria monocytogenes J0161]
 gi|254913826|ref|ZP_05263838.1| formate dehydrogenase [Listeria monocytogenes J2818]
 gi|254938215|ref|ZP_05269912.1| formate dehydrogenase [Listeria monocytogenes F6900]
 gi|47014855|gb|EAL05805.1| formate dehydrogenase, alpha subunit [Listeria monocytogenes str.
           1/2a F6854]
 gi|258610827|gb|EEW23435.1| formate dehydrogenase [Listeria monocytogenes F6900]
 gi|293591843|gb|EFG00178.1| formate dehydrogenase [Listeria monocytogenes J2818]
          Length = 995

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 3/85 (3%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E+      +  + +   Y    ++CI C  C   C    +             R +  D 
Sbjct: 124 ERPYREKGYLNDFSHPFYRYDPDQCILCGRCVEACQQVQVNETLSIDWERSQPRVIWDDD 183

Query: 99  DMIK---CIYCGLCQEACPVDAIVE 120
                  C+ CGLC   CP +A++E
Sbjct: 184 RPANLSSCVSCGLCATVCPCNALME 208



 Score = 40.5 bits (93), Expect = 0.085,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 9/69 (13%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCI 104
           R   N    C  C      C+     + + +E   R +             Y  D  +CI
Sbjct: 90  RILENHLLYCTVCDNNNGNCKVHNTTELLGVEKQERPYREKGYLNDFSHPFYRYDPDQCI 149

Query: 105 YCGLCQEAC 113
            CG C EAC
Sbjct: 150 LCGRCVEAC 158


>gi|302349195|ref|YP_003816833.1| Putative sulfur reductase catalytic hydrophilic subunit, fused
           PsrA-PsrB-like protein [Acidilobus saccharovorans
           345-15]
 gi|302329607|gb|ADL19802.1| Putative sulfur reductase catalytic hydrophilic subunit, fused
           PsrA-PsrB-like protein [Acidilobus saccharovorans
           345-15]
          Length = 886

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 24/80 (30%), Gaps = 12/80 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDG--TRRTVRYDIDMIKCIYCGLCQEACPVD 116
              RCI C  C   C               G    R    D     C+ CGLC + CP  
Sbjct: 136 DMNRCIKCFRCVKACDEVQGYHVWRAWGRGGRIMIRPDGPDFAHSSCVSCGLCVDVCPTG 195

Query: 117 AIVEGPNFEFATETRQELYY 136
           A+          E R  L Y
Sbjct: 196 AL----------EDRSVLIY 205


>gi|282899808|ref|ZP_06307770.1| ferredoxin (flavodoxin) oxidoreductase [Cylindrospermopsis
           raciborskii CS-505]
 gi|281195290|gb|EFA70225.1| ferredoxin (flavodoxin) oxidoreductase [Cylindrospermopsis
           raciborskii CS-505]
          Length = 1200

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 37/134 (27%), Gaps = 30/134 (22%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ--------------AITIESGPR 85
              TS   +   A        + CI C  C  +CP                A        
Sbjct: 681 PTGTSKWEKRNIAQEIPVWDPQVCIQCGKCVMVCPHGVIRSKVYQPEELVNAPPTFKTAN 740

Query: 86  CHDGTRRTVRYDID--MIKCIYCGLCQEACP--------VDAIVEGPNFEFATETRQ--E 133
             +     +++ I      C  C LC + CP          AI          + R+  +
Sbjct: 741 AKEHHWHELKFTIQVAAEDCTGCALCVDVCPAKNKAQPKKKAINMAQQRPLREQERENWD 800

Query: 134 LYYDKERLLNNGDR 147
            + +    L N DR
Sbjct: 801 FFLN----LPNPDR 810


>gi|289422669|ref|ZP_06424509.1| hydrogenase large subunit domain protein [Peptostreptococcus
           anaerobius 653-L]
 gi|289156848|gb|EFD05473.1| hydrogenase large subunit domain protein [Peptostreptococcus
           anaerobius 653-L]
          Length = 515

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQ 110
              +E+CI C  C++ CP  AI     P  +          +  R  ID  KC+ CGLC 
Sbjct: 147 FIDQEKCIKCGRCKSSCPYGAIAKLERPCANACGMDAITSDKYGRAKIDYDKCVSCGLCM 206

Query: 111 EACPVDAI 118
            +CP  AI
Sbjct: 207 SSCPFGAI 214



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 5/61 (8%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-----IDMIKCIYCGLCQEACPVDA 117
           C +C   E           + P      +  +        ID  KCI CG C+ +CP  A
Sbjct: 108 CNSCPDNEFFTTNTCRGCLARPCVEVCPKNAISMVNGKSFIDQEKCIKCGRCKSSCPYGA 167

Query: 118 I 118
           I
Sbjct: 168 I 168


>gi|254829511|ref|ZP_05234198.1| formate dehydrogenase [Listeria monocytogenes FSL N3-165]
 gi|258601926|gb|EEW15251.1| formate dehydrogenase [Listeria monocytogenes FSL N3-165]
          Length = 995

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 3/85 (3%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E+      +  + +   Y    ++CI C  C   C    +             R +  D 
Sbjct: 124 ERPYREKGYLNDFSHPFYRYDPDQCILCGRCVEACQQVQVNETLSIDWERSQPRVIWDDD 183

Query: 99  DMIK---CIYCGLCQEACPVDAIVE 120
                  C+ CGLC   CP +A++E
Sbjct: 184 RPANLSSCVSCGLCATVCPCNALME 208



 Score = 40.5 bits (93), Expect = 0.087,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 9/69 (13%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCI 104
           R   N    C  C      C+     + + +E   R +             Y  D  +CI
Sbjct: 90  RILENHLLYCTVCDNNNGNCKVHNTTELLGVEKQERPYREKGYLNDFSHPFYRYDPDQCI 149

Query: 105 YCGLCQEAC 113
            CG C EAC
Sbjct: 150 LCGRCVEAC 158


>gi|226225132|ref|YP_002759239.1| formate dehydrogenase alpha chain [Listeria monocytogenes
           Clip81459]
 gi|254826313|ref|ZP_05231314.1| formate dehydrogenase [Listeria monocytogenes FSL J1-194]
 gi|254854412|ref|ZP_05243760.1| formate dehydrogenase [Listeria monocytogenes FSL R2-503]
 gi|255519930|ref|ZP_05387167.1| formate dehydrogenase alpha chain [Listeria monocytogenes FSL
           J1-175]
 gi|300766085|ref|ZP_07076053.1| formate dehydrogenase, alpha subunit [Listeria monocytogenes FSL
           N1-017]
 gi|225877594|emb|CAS06308.1| Putative formate dehydrogenase alpha chain [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
 gi|258607812|gb|EEW20420.1| formate dehydrogenase [Listeria monocytogenes FSL R2-503]
 gi|293595554|gb|EFG03315.1| formate dehydrogenase [Listeria monocytogenes FSL J1-194]
 gi|300513231|gb|EFK40310.1| formate dehydrogenase, alpha subunit [Listeria monocytogenes FSL
           N1-017]
          Length = 995

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 3/85 (3%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E+      +  + +   Y    ++CI C  C   C    +             R +  D 
Sbjct: 124 ERPYREKGYLNDFSHPFYRYDPDQCILCGRCVEACQQVQVNETLSIDWERSQPRVIWDDD 183

Query: 99  DMIK---CIYCGLCQEACPVDAIVE 120
                  C+ CGLC   CP +A++E
Sbjct: 184 RPANLSSCVSCGLCATVCPCNALME 208



 Score = 40.5 bits (93), Expect = 0.087,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 9/69 (13%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCI 104
           R   N    C  C      C+     + + +E   R +             Y  D  +CI
Sbjct: 90  RILENHLLYCTVCDNNNGNCKVHNTTELLGVEKQERPYREKGYLNDFSHPFYRYDPDQCI 149

Query: 105 YCGLCQEAC 113
            CG C EAC
Sbjct: 150 LCGRCVEAC 158


>gi|47094039|ref|ZP_00231769.1| formate dehydrogenase, alpha subunit [Listeria monocytogenes str.
           4b H7858]
 gi|47017589|gb|EAL08392.1| formate dehydrogenase, alpha subunit [Listeria monocytogenes str.
           4b H7858]
          Length = 995

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 3/85 (3%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E+      +  + +   Y    ++CI C  C   C    +             R +  D 
Sbjct: 124 ERPYREKGYLNDFSHPFYRYDPDQCILCGRCVEACQQVQVNETLSIDWERSQPRVIWDDD 183

Query: 99  DMIK---CIYCGLCQEACPVDAIVE 120
                  C+ CGLC   CP +A++E
Sbjct: 184 RPANLSSCVSCGLCATVCPCNALME 208



 Score = 40.5 bits (93), Expect = 0.087,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 9/69 (13%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCI 104
           R   N    C  C      C+     + + +E   R +             Y  D  +CI
Sbjct: 90  RILENHLLYCTVCDNNNGNCKVHNTTELLGVEKQERPYREKGYLNDFSHPFYRYDPDQCI 149

Query: 105 YCGLCQEAC 113
            CG C EAC
Sbjct: 150 LCGRCVEAC 158


>gi|167630654|ref|YP_001681153.1| ferredoxin (4fe-4s) domain, putative iron-only hydrogenase
           [Heliobacterium modesticaldum Ice1]
 gi|167593394|gb|ABZ85142.1| ferredoxin (4fe-4s) domain, putative iron-only hydrogenase
           [Heliobacterium modesticaldum Ice1]
          Length = 484

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/104 (27%), Positives = 36/104 (34%), Gaps = 21/104 (20%)

Query: 36  YPFEKGSTSPRFRGEHALRRYP---------------NGEERCIACKLCEAICPAQAITI 80
            P E+ + +   RG  A                      +E+CI C  C   CP  AIT 
Sbjct: 88  CPVERFTVTEACRGCIAHPCMEACPVGAISQINRRAIINQEKCIECGRCRQACPYGAITD 147

Query: 81  ESGPRCHDGTRRTVRY------DIDMIKCIYCGLCQEACPVDAI 118
              P       + + Y       ID  KCI CG C   CP  AI
Sbjct: 148 TQRPCIKACPVKAISYSEDKLATIDQKKCINCGQCAYRCPFGAI 191


>gi|119952330|ref|YP_949931.1| putative ferredoxin-NADP reductase [Arthrobacter aurescens TC1]
 gi|119951460|gb|ABM10370.1| putative Ferredoxin-NADP reductase [Arthrobacter aurescens TC1]
          Length = 531

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 5/84 (5%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             C +   C  +CP Q I    G           +  ID   CI CG C + CPV AI  
Sbjct: 7   HGCCSDASCIPVCPVQCIRPRPG---DPDFTTAEQLYIDPATCIDCGACMDECPVSAIH- 62

Query: 121 GPNFEFATETRQELYYDKERLLNN 144
            P ++   E  + L  + +  ++N
Sbjct: 63  -PEWDLPDELSEYLAVNADYYVDN 85


>gi|160880195|ref|YP_001559163.1| hydrogenase, Fe-only [Clostridium phytofermentans ISDg]
 gi|160428861|gb|ABX42424.1| hydrogenase, Fe-only [Clostridium phytofermentans ISDg]
          Length = 644

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 10/64 (15%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            + CI C  C  +CP   I  +   +          + ID  +C +CG C   CPV+AI 
Sbjct: 221 MDNCIGCDKCTKVCPVDCIVGDFKEQ----------HYIDYTRCTHCGACLSTCPVNAIT 270

Query: 120 EGPN 123
            G N
Sbjct: 271 SGNN 274


>gi|15899539|ref|NP_344144.1| formate dehydrogenase Alpha subunit (fdhF-2) [Sulfolobus
           solfataricus P2]
 gi|284173469|ref|ZP_06387438.1| formate dehydrogenase Alpha subunit (fdhF-2) [Sulfolobus
           solfataricus 98/2]
 gi|13816176|gb|AAK42934.1| Formate dehydrogenase Alpha subunit (fdhF-2) [Sulfolobus
           solfataricus P2]
 gi|261601311|gb|ACX90914.1| formate dehydrogenase, alpha subunit [Sulfolobus solfataricus 98/2]
          Length = 979

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQE 111
            Y     +CI C  C   C   A+             R V  +   I    C+ CG C  
Sbjct: 139 FYIYDPSQCILCGRCVEACQDFAVNEVIWINWDLNPPRVVWDNGNPIGNSSCVNCGTCVT 198

Query: 112 ACPVDAIVE 120
            CPV+A++E
Sbjct: 199 VCPVNALME 207



 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 23/55 (41%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           C L EA+      + +   + +        Y  D  +CI CG C EAC   A+ E
Sbjct: 110 CVLHEAVIKLNINSQKYVEKPYQTDESGPFYIYDPSQCILCGRCVEACQDFAVNE 164


>gi|84385487|ref|ZP_00988518.1| iron-sulfur cluster-binding protein [Vibrio splendidus 12B01]
 gi|84379467|gb|EAP96319.1| iron-sulfur cluster-binding protein [Vibrio splendidus 12B01]
          Length = 553

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 36/102 (35%), Gaps = 9/102 (8%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
              + C  C  C A+CP +A+  +           +         CI CGLC++ACP + 
Sbjct: 415 CESKDCTLCMSCVAVCPTRALHTDGA---------SPSLKFVEQDCIQCGLCEKACPENV 465

Query: 118 IVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
           +   P   +  E RQ+     E       R         + D
Sbjct: 466 LTLTPRMNWVKEERQQAVVIHEEKAAECLRCHKPFAPQSMID 507



 Score = 37.4 bits (85), Expect = 0.68,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 6/53 (11%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C+ C   CPA A++ E   +         + +I+   C   G C  +CP +AI
Sbjct: 186 CERCVDACPAGALSSEGSDKTGH------KIEINPYLCQGVGTCATSCPTEAI 232


>gi|324999651|ref|ZP_08120763.1| molybdopterin oxidoreductase Fe4S4 region [Pseudonocardia sp. P1]
          Length = 325

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 4/101 (3%)

Query: 29  KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88
           +     + P  +   +     +     Y     RCI C  C   C   A    +      
Sbjct: 152 RHPGHHHAPDGRTRATVEQPVKIDNDLYVRDYSRCIMCYKCVNACGTDAQFTFAIAAAGR 211

Query: 89  GTRRTVRYDIDMIK----CIYCGLCQEACPVDAIVEGPNFE 125
           G    +  + D+      C+YCG C   CP  A+V     +
Sbjct: 212 GFDARIATEHDVELPDSACVYCGNCIGVCPTGALVSVAEHD 252


>gi|159043051|ref|YP_001531845.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Dinoroseobacter shibae DFL 12]
 gi|157910811|gb|ABV92244.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dinoroseobacter shibae DFL 12]
          Length = 672

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 27/81 (33%), Gaps = 9/81 (11%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E C  C+ C  +CP  A+              T         C+ CGLC   CP  AI
Sbjct: 519 DPEACTLCQACTGVCPTGALLDNPE---------TPMLRFTESACVQCGLCAATCPETAI 569

Query: 119 VEGPNFEFATETRQELYYDKE 139
              P  +FA          +E
Sbjct: 570 TLTPQLDFAAWDTPRRILHEE 590


>gi|46908757|ref|YP_015146.1| formate dehydrogenase, alpha subunit [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|46882029|gb|AAT05323.1| formate dehydrogenase, alpha subunit [Listeria monocytogenes
           serotype 4b str. F2365]
          Length = 995

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 3/85 (3%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E+      +  + +   Y    ++CI C  C   C    +             R +  D 
Sbjct: 124 ERPYREKGYLNDFSHPFYRYDPDQCILCGRCVEACQQVQVNETLSIDWERSQPRVIWDDD 183

Query: 99  DMIK---CIYCGLCQEACPVDAIVE 120
                  C+ CGLC   CP +A++E
Sbjct: 184 RPANLSSCVSCGLCATVCPCNALME 208



 Score = 40.5 bits (93), Expect = 0.088,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 9/69 (13%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCI 104
           R   N    C  C      C+     + + +E   R +             Y  D  +CI
Sbjct: 90  RILENHLLYCTVCDNNNGNCKVHNTTELLGVEKQERPYREKGYLNDFSHPFYRYDPDQCI 149

Query: 105 YCGLCQEAC 113
            CG C EAC
Sbjct: 150 LCGRCVEAC 158


>gi|328469843|gb|EGF40756.1| formate dehydrogenase, alpha subunit [Listeria monocytogenes 220]
          Length = 962

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 3/85 (3%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E+      +  + +   Y    ++CI C  C   C    +             R +  D 
Sbjct: 124 ERPYREKGYLNDFSHPFYRYDPDQCILCGRCVEACQQVQVNETLSIDWERSQPRVIWDDD 183

Query: 99  DMIK---CIYCGLCQEACPVDAIVE 120
                  C+ CGLC   CP +A++E
Sbjct: 184 RPANLSSCVSCGLCATVCPCNALME 208



 Score = 40.5 bits (93), Expect = 0.088,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 9/69 (13%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCI 104
           R   N    C  C      C+     + + +E   R +             Y  D  +CI
Sbjct: 90  RILENHLLYCTVCDNNNGNCKVHNTTELLGVEKQERPYREKGYLNDFSHPFYRYDPDQCI 149

Query: 105 YCGLCQEAC 113
            CG C EAC
Sbjct: 150 LCGRCVEAC 158


>gi|313672137|ref|YP_004050248.1| glutamate synthase (nadph) gltb3 subunit [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312938893|gb|ADR18085.1| glutamate synthase (NADPH) GltB3 subunit [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 776

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 29/108 (26%), Gaps = 2/108 (1%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                   L  F KA        +K        G+       +  +RC++C  C      
Sbjct: 664 MFKGLP--LSNFAKAPMIPQDRIKKEYYEQINLGKTGKVAPEDETKRCLSCGFCRDCELC 721

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                E              Y  +  KCI CG+C   CP        N
Sbjct: 722 LNSCPEQAISRIQKDGGKFEYISNPNKCIGCGICAGICPCGIWEMIDN 769


>gi|169247660|gb|ACA51660.1| HydB [Thermoanaerobacterium saccharolyticum]
          Length = 596

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 15/97 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            +RY F+ +   +   ++           AL ++    ++C  C +C   CP  AI+   
Sbjct: 513 TIRY-FRDEYEAHIKEKRCPAGVC----QALLKFRIDPDKCKGCGICAKNCPTNAISG-- 565

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
                   +    + ID  KCI CG C + CP DAI 
Sbjct: 566 --------KVKQPHVIDQDKCIKCGTCMDKCPFDAIY 594


>gi|218961763|ref|YP_001741538.1| putative electron transfer flavoprotein alpha-subunit (etfA and
           4Fe-4S ferredoxin modules) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730420|emb|CAO81332.1| putative electron transfer flavoprotein alpha-subunit (etfA and
           4Fe-4S ferredoxin modules) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 398

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 27/70 (38%), Gaps = 11/70 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +       E+C+ C  C   C   AI IE                ID  KC+ CG C  A
Sbjct: 1   MFMIEVLIEKCVGCGACLRACAYDAIKIEEKLAI-----------IDSDKCVLCGACVSA 49

Query: 113 CPVDAIVEGP 122
           CP DAI+   
Sbjct: 50  CPFDAILLRK 59


>gi|91203805|emb|CAJ71458.1| similar to NADH:ubiquinone oxidoreductase 51 kDa subunit
           [Candidatus Kuenenia stuttgartiensis]
          Length = 594

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/101 (30%), Positives = 41/101 (40%), Gaps = 15/101 (14%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80
              L+Y FK +   +    K            L ++   EE C  C LC   CP  AIT 
Sbjct: 509 MTTLKY-FKDEYVEHIKENKCRAGVC----KELIKFSVIEEACTGCHLCYKNCPVDAITG 563

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           E+             + ID   CI CG+C E C  DAI++G
Sbjct: 564 ETKK----------VHHIDQKICIKCGMCYEVCKFDAILKG 594


>gi|254932171|ref|ZP_05265530.1| formate dehydrogenase [Listeria monocytogenes HPB2262]
 gi|293583728|gb|EFF95760.1| formate dehydrogenase [Listeria monocytogenes HPB2262]
 gi|332313016|gb|EGJ26111.1| Putative oxidoreductase yjgC [Listeria monocytogenes str. Scott A]
          Length = 995

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 3/85 (3%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E+      +  + +   Y    ++CI C  C   C    +             R +  D 
Sbjct: 124 ERPYREKGYLNDFSHPFYRYDPDQCILCGRCVEACQQVQVNETLSIDWERSQPRVIWDDD 183

Query: 99  DMIK---CIYCGLCQEACPVDAIVE 120
                  C+ CGLC   CP +A++E
Sbjct: 184 RPANLSSCVSCGLCATVCPCNALME 208



 Score = 40.5 bits (93), Expect = 0.088,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 9/69 (13%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCI 104
           R   N    C  C      C+     + + +E   R +             Y  D  +CI
Sbjct: 90  RILENHLLYCTVCDNNNGNCKVHNTTELLGVEKQERPYREKGYLNDFSHPFYRYDPDQCI 149

Query: 105 YCGLCQEAC 113
            CG C EAC
Sbjct: 150 LCGRCVEAC 158


>gi|303257906|ref|ZP_07343915.1| [Fe] hydrogenase gamma [Burkholderiales bacterium 1_1_47]
 gi|331000429|ref|ZP_08324104.1| putative ferredoxin hydrogenase HydA1 [Parasutterella
           excrementihominis YIT 11859]
 gi|302859249|gb|EFL82331.1| [Fe] hydrogenase gamma [Burkholderiales bacterium 1_1_47]
 gi|329571761|gb|EGG53441.1| putative ferredoxin hydrogenase HydA1 [Parasutterella
           excrementihominis YIT 11859]
          Length = 597

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 4/79 (5%)

Query: 59  GEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
              +C+ C  C  +C       A+ I+             +  +D  KC+ CG C   CP
Sbjct: 146 DVNKCVRCMRCVEVCNKIQGIGALRIDEIGTKAGVCLNGTKDWVDSTKCVRCGQCIMVCP 205

Query: 115 VDAIVEGPNFEFATETRQE 133
             A++   N + A E  ++
Sbjct: 206 TGALMSTDNVDKAREILED 224


>gi|266619152|ref|ZP_06112087.1| ferredoxin hydrogenase [Clostridium hathewayi DSM 13479]
 gi|288869333|gb|EFD01632.1| ferredoxin hydrogenase [Clostridium hathewayi DSM 13479]
          Length = 457

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 34/101 (33%), Gaps = 23/101 (22%)

Query: 25  RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84
           ++ F   T I  P E  + S               EE CI C  C+ +C           
Sbjct: 3   KHLF---TDIRVPIEPDNPSVM-----------RHEELCIKCGQCKTVCT---------E 39

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
                    +    D   CI+CG C   CPV  I E P +E
Sbjct: 40  SIGVAGYYDLLKTGDTAICIHCGQCANVCPVGCITEVPEWE 80


>gi|258513529|ref|YP_003189751.1| NADH dehydrogenase (quinone) [Desulfotomaculum acetoxidans DSM 771]
 gi|257777234|gb|ACV61128.1| NADH dehydrogenase (quinone) [Desulfotomaculum acetoxidans DSM 771]
          Length = 597

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 15/98 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            LR+ F+ +   +   ++           AL  Y      C  C LC   CPA AI+ E 
Sbjct: 514 TLRH-FREEYIAHIKDKRCPAGAC----QALVTYYIDARACKGCGLCSKNCPAGAISGEK 568

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
                        + ID  KCI CG C++ C  ++I  
Sbjct: 569 KKP----------HVIDAGKCIKCGTCKDKCKFNSIFI 596


>gi|239625212|ref|ZP_04668243.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239519442|gb|EEQ59308.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 507

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR------YDIDMIKCIYCGLCQ 110
              ++RCI C  C  +C   AI I+  P         +        DID  KC+ CG+C 
Sbjct: 148 HIDQDRCIRCGRCADVCSYNAIIIQERPCAAACGMDCIHSDENGKADIDYDKCVSCGMCL 207

Query: 111 EACPVDAI 118
             CP  AI
Sbjct: 208 VNCPFGAI 215



 Score = 38.2 bits (87), Expect = 0.39,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 7/66 (10%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-------IDMIKCIYCGLCQEACPV 115
           C AC     +         + P      +  V  D       ID  +CI CG C + C  
Sbjct: 107 CNACHEKRVVVTDGCQGCLAHPCVEVCPKDAVSIDRSNGRSHIDQDRCIRCGRCADVCSY 166

Query: 116 DAIVEG 121
           +AI+  
Sbjct: 167 NAIIIQ 172


>gi|291535976|emb|CBL09088.1| Iron only hydrogenase large subunit, C-terminal domain [Roseburia
           intestinalis M50/1]
          Length = 482

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110
                +C  C  C   CP  AI     P         + Y+      ID  KCI CG C 
Sbjct: 124 HIDPSKCKECGRCAQACPYNAIAHLKRPCKFSCPVNAITYNEYGISVIDKEKCIRCGKCI 183

Query: 111 EACPVDAI 118
            +CP  AI
Sbjct: 184 HSCPFGAI 191


>gi|227485286|ref|ZP_03915602.1| hydrogenase large subunit domain protein [Anaerococcus lactolyticus
           ATCC 51172]
 gi|227236746|gb|EEI86761.1| hydrogenase large subunit domain protein [Anaerococcus lactolyticus
           ATCC 51172]
          Length = 508

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 6/66 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112
            +++CI C  C   CP  AI  +  P       + ++ D      ID  KC+ CG C   
Sbjct: 146 DQDKCIKCGKCVEACPYNAINHQKRPCAESCGVKAIKSDELGRASIDENKCVACGRCIIT 205

Query: 113 CPVDAI 118
           CP  AI
Sbjct: 206 CPFGAI 211



 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 25/65 (38%), Gaps = 5/65 (7%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-----DIDMIKCIYCGLCQEACPVDA 117
           C AC   +     Q       P  +   +  V Y      ID  KCI CG C EACP +A
Sbjct: 105 CEACPENKVTVTDQCHACIGHPCVNVCPKNAVSYSSKGAKIDQDKCIKCGKCVEACPYNA 164

Query: 118 IVEGP 122
           I    
Sbjct: 165 INHQK 169


>gi|218883891|ref|YP_002428273.1| Pyruvate synthase subunit porD [Desulfurococcus kamchatkensis
           1221n]
 gi|218765507|gb|ACL10906.1| Pyruvate synthase subunit porD [Desulfurococcus kamchatkensis
           1221n]
          Length = 93

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 11/67 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              +C  C +C   CP  AI  +                +++  C  CG+C   CPV AI
Sbjct: 36  DHNKCTKCMICWLFCPDMAIVWDGEK-----------IQVNLDYCKGCGICAHECPVKAI 84

Query: 119 VEGPNFE 125
              P FE
Sbjct: 85  SMVPEFE 91


>gi|307729120|ref|YP_003906344.1| dihydroorotate dehydrogenase family protein [Burkholderia sp.
           CCGE1003]
 gi|307583655|gb|ADN57053.1| dihydroorotate dehydrogenase family protein [Burkholderia sp.
           CCGE1003]
          Length = 440

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 8/75 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117
            +++CI C LC   C   A    +  +          +++   +C+ C LC   CPV   
Sbjct: 341 DQDKCIQCGLCHIACEDTAHQAITKEKAGV-----RHFEVMDSECVGCNLCMHVCPVEQC 395

Query: 118 IVE--GPNFEFATET 130
           I      N E+A  T
Sbjct: 396 ITMERVDNGEYANWT 410


>gi|90420729|ref|ZP_01228635.1| formate dehydrogenase, alpha subunit [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335020|gb|EAS48781.1| formate dehydrogenase, alpha subunit [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 931

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 5/84 (5%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID----MIKCIYCGLCQEACP 114
             + CI C  C   C  +    +       G R    +DI     +  C+ CG C +ACP
Sbjct: 150 NMDACITCGACVRACR-EVQVNDVIGMAERGNRSVPVFDIHDPMGLSTCVTCGECVQACP 208

Query: 115 VDAIVEGPNFEFATETRQELYYDK 138
             A+ E    +     R    +DK
Sbjct: 209 TGALYEKSLMDETHTVRAVQDFDK 232


>gi|261856376|ref|YP_003263659.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Halothiobacillus
           neapolitanus c2]
 gi|261836845|gb|ACX96612.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Halothiobacillus
           neapolitanus c2]
          Length = 274

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/131 (23%), Positives = 48/131 (36%), Gaps = 15/131 (11%)

Query: 29  KAKTTINYPFEKGST-SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH 87
           K + T  +P   GS       G   L      E     C  C   CP++AIT+       
Sbjct: 11  KGRATTGWPESAGSDGQEGVLGLPKLNADQCSEGA-QGCTKCVTSCPSEAITLNVTEDQE 69

Query: 88  DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY-----YDKERLL 142
                    D+D  +C+ C LC E CP  A     ++ FA   R +L         ++ L
Sbjct: 70  P------HIDLDYARCVGCQLCTETCPSGAFSPSNDWAFAVRDRADLSRLARPATPDKKL 123

Query: 143 NNGDRWESEIV 153
              ++W+  + 
Sbjct: 124 E--EKWQKSLA 132


>gi|117922345|ref|YP_871537.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. ANA-3]
 gi|117614677|gb|ABK50131.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. ANA-3]
          Length = 553

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 30/82 (36%), Gaps = 9/82 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E+C  C  C AICP  A+                        C+ CGLC+ ACP   I
Sbjct: 419 NVEKCTLCMSCVAICPTMALQDGGDKPALH---------FIEQNCVQCGLCEAACPEKVI 469

Query: 119 VEGPNFEFATETRQELYYDKER 140
              P   F    RQ+L   KE 
Sbjct: 470 SLTPQINFDKAARQQLQTLKEE 491



 Score = 38.5 bits (88), Expect = 0.29,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 11/53 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C   CPA AI+  +              ++D   C   G C  ACP  AI
Sbjct: 195 CNRCLNFCPADAISSVAKK-----------IEVDPYLCHGAGSCASACPTGAI 236


>gi|213028131|ref|ZP_03342578.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 118

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 25/65 (38%)

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRN 155
           +  ++ +CI+CG C+E CP  AI     +E A   +++        L N           
Sbjct: 6   WQFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRPFAVQ 65

Query: 156 IVTDS 160
              D 
Sbjct: 66  KEIDY 70


>gi|189485599|ref|YP_001956540.1| electron transfer flavoprotein alpha subunit [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
 gi|170287558|dbj|BAG14079.1| electron transfer flavoprotein alpha subunit [uncultured Termite
           group 1 bacterium phylotype Rs-D17]
          Length = 409

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 3/71 (4%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ++C+ CK+CE +CP  AI+I          ++     ID+ KC YCG C + C  +AI  
Sbjct: 10  DKCVGCKMCENVCPFNAISIVERLEYP---KKFKLAVIDLNKCTYCGSCVQTCKFNAIEL 66

Query: 121 GPNFEFATETR 131
             +   +   +
Sbjct: 67  KKDVPLSVVDK 77



 Score = 38.2 bits (87), Expect = 0.39,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 15/29 (51%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
           +   KC+ C +C+  CP +AI      E+
Sbjct: 7   VFTDKCVGCKMCENVCPFNAISIVERLEY 35


>gi|158521485|ref|YP_001529355.1| nitroreductase [Desulfococcus oleovorans Hxd3]
 gi|158510311|gb|ABW67278.1| nitroreductase [Desulfococcus oleovorans Hxd3]
          Length = 334

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 24/82 (29%), Gaps = 5/82 (6%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
               +  +          E+C  C  C   CP      E G          V Y      
Sbjct: 5   LKQAYLPDMNFPVRTIDAEKCSKCGRCFETCPTYGYRWEKGQVPEP-----VGYGGFSQA 59

Query: 103 CIYCGLCQEACPVDAIVEGPNF 124
           CI CG C   CP  AI    +F
Sbjct: 60  CINCGNCIAVCPTGAITMTGSF 81


>gi|51244894|ref|YP_064778.1| hydrogenase, component I-formate hydrogenlyase subunit 7
           [Desulfotalea psychrophila LSv54]
 gi|50875931|emb|CAG35771.1| related to hydrogenase, component I-formate hydrogenlyase subunit 7
           [Desulfotalea psychrophila LSv54]
          Length = 248

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 42/117 (35%), Gaps = 17/117 (14%)

Query: 19  AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78
              +      +   T  YP E  S   R+RG   + +  + E      + C  ICP + I
Sbjct: 1   MLKIIKNKMEQGNKTAKYPKEPISLYHRYRGMPVINKDCSAEIA----RQCLDICPQECI 56

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
             E+               ID+ +C +CG C+     + +    NFE     R EL 
Sbjct: 57  DPEAK-------------TIDLGRCTFCGQCETVAEGNFVKFSQNFELGAANRDELI 100


>gi|323499047|ref|ZP_08104027.1| iron-sulfur cluster-binding protein [Vibrio sinaloensis DSM 21326]
 gi|323315882|gb|EGA68913.1| iron-sulfur cluster-binding protein [Vibrio sinaloensis DSM 21326]
          Length = 553

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 10/84 (11%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
              + C  C  C A+CP +A+  +           +         CI CGLC +ACP   
Sbjct: 415 CESKDCTLCMSCVAVCPTRALHTDGA---------SPSLQFIEQDCIQCGLCTKACPEQV 465

Query: 118 IVEGPNFEFATETRQEL-YYDKER 140
           +   P   +  E+RQ+     +E+
Sbjct: 466 LTMTPRMNWDQESRQQAKVIHQEK 489



 Score = 40.9 bits (94), Expect = 0.068,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           C  C   CPA A++ E   +         R +I+   C   G C  ACP +AI 
Sbjct: 186 CDRCVDACPAGALSSEGNDKTGH------RIEINPYLCQGVGTCATACPTEAIH 233


>gi|315641113|ref|ZP_07896192.1| pyruvate-ferredoxin oxidoreductase [Enterococcus italicus DSM
           15952]
 gi|315483121|gb|EFU73638.1| pyruvate-ferredoxin oxidoreductase [Enterococcus italicus DSM
           15952]
          Length = 1234

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/156 (19%), Positives = 49/156 (31%), Gaps = 28/156 (17%)

Query: 2   RIFRCNVSFLFLKEFV------GAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRR 55
           +  +      ++KE V          L +    + + T         T+   +   AL  
Sbjct: 630 KEIKKASKSTYVKEIVEPINAQKGNELSVGTLVENQMTRG--DMPLGTTAVEKRGIALEV 687

Query: 56  YPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRRTV---------RYDIDMI 101
                +RC  C  C  +CP  AI       E      +G              R  + + 
Sbjct: 688 PQWISDRCTMCNECAFVCPHAAIRPFLANGEEMEEAPEGFIVREMRGKDGLLYRIQVSVE 747

Query: 102 KCIYCGLCQEACPV--DAIVEGPNFEFATETRQELY 135
            C  CGLC EACP    A+   P      E +++  
Sbjct: 748 DCTGCGLCVEACPAKGKALEMKPY----GEQKEQAI 779


>gi|289435849|ref|YP_003465721.1| formate dehydrogenase, alpha subunit [Listeria seeligeri serovar
           1/2b str. SLCC3954]
 gi|289172093|emb|CBH28639.1| formate dehydrogenase, alpha subunit [Listeria seeligeri serovar
           1/2b str. SLCC3954]
          Length = 995

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 3/85 (3%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E+      +  + +   Y    ++CI C  C   C    +             R +  D 
Sbjct: 124 ERPYREKGYLNDFSHPFYRYDPDQCILCGRCVEACQQVQVNETLSIDWERSQPRVIWDDD 183

Query: 99  DMIK---CIYCGLCQEACPVDAIVE 120
                  C+ CGLC   CP +A++E
Sbjct: 184 KPANLSSCVSCGLCATVCPCNALME 208



 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 9/69 (13%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCI 104
           R   N    C  C      C+     + + +E   R +             Y  D  +CI
Sbjct: 90  RILENHLLYCTVCDNNNGNCKVHNTTELLGVEQQERPYREKGYLNDFSHPFYRYDPDQCI 149

Query: 105 YCGLCQEAC 113
            CG C EAC
Sbjct: 150 LCGRCVEAC 158


>gi|149203818|ref|ZP_01880787.1| NAD-dependent formate dehydrogenase, alpha subunit [Roseovarius sp.
           TM1035]
 gi|149142935|gb|EDM30977.1| NAD-dependent formate dehydrogenase, alpha subunit [Roseovarius sp.
           TM1035]
          Length = 964

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 30/93 (32%), Gaps = 4/93 (4%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDID 99
                 + +   +     +CI C  C   C       A+TI+        +      D  
Sbjct: 166 PEWLPKDDSNPYFSYDPSKCIVCNRCVRACEEVQGTFALTIQGRGFDSRVSAGNADDDFL 225

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
              C+ CG C +ACP   + E    E  T  R 
Sbjct: 226 ASDCVSCGACVQACPTATLQEKSIIELGTPDRS 258


>gi|312868661|ref|ZP_07728854.1| dihydropyrimidine dehydrogenase [Lactobacillus oris PB013-T2-3]
 gi|311095775|gb|EFQ54026.1| dihydropyrimidine dehydrogenase [Lactobacillus oris PB013-T2-3]
          Length = 431

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 22/79 (27%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                             ++CI C  C   C   A       +             D  K
Sbjct: 326 VPTNQLDRDYKVYPKIDWDKCIGCGRCFISCQDGAH------QAMGWDDDKRLPTFDQSK 379

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV AI  G
Sbjct: 380 CVGCQLCALVCPVGAIKLG 398


>gi|326202175|ref|ZP_08192045.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
           papyrosolvens DSM 2782]
 gi|325987970|gb|EGD48796.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
           papyrosolvens DSM 2782]
          Length = 266

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 43/113 (38%), Gaps = 11/113 (9%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
           +  +       T+ YP  K + S    G            +C  C  C + CP  A+ + 
Sbjct: 4   IVKKMIQHGTVTLQYPK-KNTKSTYITGIPEF-----DYSKCERCGKCISACPTGALVLV 57

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134
                     R     ++  +CI+C  C+EAC   A+    NFE A ++R  L
Sbjct: 58  DKD-----GEREKLPAVNADECIFCRFCEEACTNQALKLSNNFELAQKSRDLL 105



 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 23/56 (41%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            + + +     +T++   +    T  T   + D  KC  CG C  ACP  A+V   
Sbjct: 3   NIVKKMIQHGTVTLQYPKKNTKSTYITGIPEFDYSKCERCGKCISACPTGALVLVD 58


>gi|16081547|ref|NP_393903.1| formate dehydrogenase related protein [Thermoplasma acidophilum DSM
           1728]
 gi|10639595|emb|CAC11567.1| formate dehydrogenase related protein [Thermoplasma acidophilum]
          Length = 996

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 34/101 (33%), Gaps = 3/101 (2%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQE 111
            Y     +CI C  C   C    +             R V  D   I+   C+ CG C  
Sbjct: 157 FYVYDPSQCILCGRCVEACQDVQVNETLHIDWSLERPRVVWDDGSKINESSCVSCGHCVT 216

Query: 112 ACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEI 152
            CPV+A++E      A          K  +++    +E  I
Sbjct: 217 VCPVNALMEKTMIGNAGYLTDLDTETKNTMIDLVKAFEPII 257


>gi|28898284|ref|NP_797889.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153837769|ref|ZP_01990436.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus
           AQ3810]
 gi|254229544|ref|ZP_04922957.1| Ferredoxin [Vibrio sp. Ex25]
 gi|260361866|ref|ZP_05774875.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus K5030]
 gi|260878621|ref|ZP_05890976.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus
           AN-5034]
 gi|260896153|ref|ZP_05904649.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus
           Peru-466]
 gi|262394268|ref|YP_003286122.1| iron-sulfur cluster-binding protein [Vibrio sp. Ex25]
 gi|28806501|dbj|BAC59773.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus RIMD
           2210633]
 gi|149748874|gb|EDM59709.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus
           AQ3810]
 gi|151937917|gb|EDN56762.1| Ferredoxin [Vibrio sp. Ex25]
 gi|262337862|gb|ACY51657.1| iron-sulfur cluster-binding protein [Vibrio sp. Ex25]
 gi|308086193|gb|EFO35888.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus
           Peru-466]
 gi|308091268|gb|EFO40963.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus
           AN-5034]
 gi|308111393|gb|EFO48933.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus K5030]
          Length = 553

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 36/102 (35%), Gaps = 9/102 (8%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
              + C  C  C A+CP +A+  +          ++         CI CGLC++ACP   
Sbjct: 415 CESKDCTLCMSCVAVCPTRALHTDG---------QSPSLKFVEQDCIQCGLCEKACPEKV 465

Query: 118 IVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
           +   P   +  E RQ+     E       R         + D
Sbjct: 466 LTLTPRMNWVKEERQKAVVIHEEKAAECIRCHKPFAPQSMID 507



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 6/54 (11%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           C+ C   CPA A++ E   +         R +I+   C   G C  ACP +AI 
Sbjct: 186 CERCVDACPAGALSSEGSDKTGH------RIEINPYLCQGVGTCATACPTEAIH 233


>gi|313631834|gb|EFR99003.1| putative formate dehydrogenase [Listeria seeligeri FSL N1-067]
          Length = 995

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 3/85 (3%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E+      +  + +   Y    ++CI C  C   C    +             R +  D 
Sbjct: 124 ERPYREKGYLNDFSHPFYRYDPDQCILCGRCVEACQQVQVNETLSIDWERSQPRVIWDDD 183

Query: 99  DMIK---CIYCGLCQEACPVDAIVE 120
                  C+ CGLC   CP +A++E
Sbjct: 184 KPANLSSCVSCGLCATVCPCNALME 208



 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 9/69 (13%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCI 104
           R   N    C  C      C+     + + +E   R +             Y  D  +CI
Sbjct: 90  RILENHLLYCTVCDNNNGNCKVHNTTELLGVEQQERPYREKGYLNDFSHPFYRYDPDQCI 149

Query: 105 YCGLCQEAC 113
            CG C EAC
Sbjct: 150 LCGRCVEAC 158


>gi|159042417|ref|YP_001541669.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Caldivirga maquilingensis IC-167]
 gi|157921252|gb|ABW02679.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Caldivirga maquilingensis IC-167]
          Length = 107

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGP-RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
            ++ C  C++C   CP  AI     P    +G + ++ ++++   C  CG+C   CPV A
Sbjct: 38  DQDACTRCRICWLYCPEPAILELDKPYVAKNGRKYSITFEVNYDYCKGCGICANECPVKA 97

Query: 118 IVEGPN 123
           I   P 
Sbjct: 98  IKMVPE 103


>gi|67474180|ref|XP_652839.1| Fe-hydrogenase [Entamoeba histolytica HM-1:IMSS]
 gi|27652439|gb|AAO17820.1| putative long iron-dependent hydrogenase 2 [Entamoeba histolytica]
 gi|56469743|gb|EAL47464.1| Fe-hydrogenase, putative [Entamoeba histolytica HM-1:IMSS]
          Length = 504

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 26/66 (39%), Gaps = 6/66 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV------RYDIDMIKCIYCGLCQEA 112
            +  CI C  C   CP  AI  +S P         +         ID  KCI CG C  A
Sbjct: 147 NQNNCIKCGRCYKFCPYGAIISKSVPCVKACPCGAMLDSPEGVKTIDFEKCINCGGCMRA 206

Query: 113 CPVDAI 118
           CP  AI
Sbjct: 207 CPFGAI 212



 Score = 40.5 bits (93), Expect = 0.090,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 6/65 (9%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY------DIDMIKCIYCGLCQEAC 113
           ++ C  C               S P   +  ++ + +       I+   CI CG C + C
Sbjct: 102 QKGCNKCHFNGYFVTQACEGCTSRPCSVNCPKKCISFGEDGRAVINQNNCIKCGRCYKFC 161

Query: 114 PVDAI 118
           P  AI
Sbjct: 162 PYGAI 166


>gi|313835282|gb|EFS72996.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL037PA2]
 gi|314928232|gb|EFS92063.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL044PA1]
 gi|314970063|gb|EFT14161.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL037PA3]
 gi|328905958|gb|EGG25734.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium sp. P08]
          Length = 605

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 9/62 (14%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C  C  C   CP  AI             +  RY+ +  KCI C  C + CPV AI   
Sbjct: 514 NCFECDGCYGSCPEDAI---------IKLGKGHRYEFNYDKCIGCATCFDQCPVHAIEMI 564

Query: 122 PN 123
           P 
Sbjct: 565 PE 566


>gi|325479256|gb|EGC82352.1| pyruvate synthase [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 1175

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/117 (23%), Positives = 40/117 (34%), Gaps = 20/117 (17%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESG 83
           FE G+T    RG  AL       + CI C  C  +CP                A      
Sbjct: 665 FESGTTQYEKRG-IALNVPEWQLDNCIQCNQCSFVCPHAVIRPFLVTEDEKANAPEGFDT 723

Query: 84  PRCHDGTRRTVRYDID--MIKCIYCGLCQEACPVD--AIVEGPNFEFATETRQELYY 136
            +          + I    + C  CG C + CP    A++  P FE   E  ++ +Y
Sbjct: 724 KKAIGKGMEGYEFRIQVSPLDCTGCGNCADVCPAPQKALLMKP-FEEQVEKEKDNWY 779


>gi|33596549|ref|NP_884192.1| putative iron-sulfur binding protein [Bordetella parapertussis
           12822]
 gi|33566318|emb|CAE37231.1| putative iron-sulfur binding protein [Bordetella parapertussis]
          Length = 705

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 9/79 (11%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + C  C  C + CP+ A+             ++ +  +    C+ CGLC   CP +AI
Sbjct: 572 DSDACTLCMSCVSACPSNALLDNP---------QSPQLRMVEKNCVQCGLCATTCPENAI 622

Query: 119 VEGPNFEFATETRQELYYD 137
              P    A   R+ +  +
Sbjct: 623 TLVPRLLLAPRRREAVVLN 641



 Score = 40.5 bits (93), Expect = 0.071,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 9/55 (16%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C+ C  IC A+AI+ +S            R  ++   C+ CG C   CP  A+
Sbjct: 323 VGCRACIDICSARAISSDS---------HHQRIVVNPNLCVGCGACTTVCPSGAL 368



 Score = 34.3 bits (77), Expect = 5.3,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 13/30 (43%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           ID+  C  C  C  ACP  AI      + A
Sbjct: 200 IDLDLCTRCNACISACPDGAIGLDYQVDTA 229


>gi|148655365|ref|YP_001275570.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing
           protein [Roseiflexus sp. RS-1]
 gi|148567475|gb|ABQ89620.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Roseiflexus sp. RS-1]
          Length = 1192

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 29/104 (27%), Gaps = 24/104 (23%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE----------------SGPRCHDG 89
             +   AL       + CI C  C  +CP   I  +                +  R  + 
Sbjct: 673 WEKRTIALEVPVWEPDICIQCGKCAYVCPHAVIRTKVYEPALLEGAPETFLSAEARFKEF 732

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPV--------DAIVEGPNFE 125
                   I    C  CGLC E CP          AI   P  E
Sbjct: 733 PGYKYTLAISSEDCTGCGLCVEVCPAKDKRQVGRKAINMKPLVE 776


>gi|94264814|ref|ZP_01288591.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase:4Fe-4S
           ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
 gi|93454753|gb|EAT05011.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase:4Fe-4S
           ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
          Length = 938

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 6/63 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +E CI C LC+++CP QAI I              + +     C  CG+C   CPV AI
Sbjct: 864 DKETCIGCGLCQSLCPYQAIRIAKDDNNK------RKAETITASCKGCGICAAHCPVFAI 917

Query: 119 VEG 121
             G
Sbjct: 918 SMG 920



 Score = 41.2 bits (95), Expect = 0.047,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 29/94 (30%), Gaps = 12/94 (12%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP-------RCHDGTRRTVRY 96
             +F     +R      ++C AC +C   CP   +   +                    Y
Sbjct: 24  PGKFSARLRVRPRYIDADKCTACGMCTQYCPRHLVDDYNEGLALTRPIHIDYPQAVPASY 83

Query: 97  DIDMIKCIY-----CGLCQEACPVDAIVEGPNFE 125
            ID   C++     C +C  AC   AI      E
Sbjct: 84  FIDPEACLHLKHGTCKICVSACQTRAIDFAQEAE 117



 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 14/31 (45%)

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                +D   CI CGLCQ  CP  AI    +
Sbjct: 858 PTVSTVDKETCIGCGLCQSLCPYQAIRIAKD 888


>gi|307266765|ref|ZP_07548290.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306918207|gb|EFN48456.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 1170

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 40/123 (32%), Gaps = 30/123 (24%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG   L       + CI C  C  +CP               +A +     +        
Sbjct: 674 RGIAVLIPEWQ-IDNCIQCNQCSYVCPHAVIRPFLLTEEEMKKAPSTFKLKKAIGRGLEG 732

Query: 94  VRYDID--MIKCIYCGLCQEAC--PVDAIVEGP----------NFEFATE-TRQELYYDK 138
           + Y I    + C  CG C + C  P  A++  P          N+E+A     ++   DK
Sbjct: 733 LWYRIQVSPLDCTGCGNCADVCPAPTKALIMKPAEEQIEKEARNWEYAVTLDVKDNLVDK 792

Query: 139 ERL 141
             L
Sbjct: 793 ATL 795


>gi|296158465|ref|ZP_06841296.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia sp.
           Ch1-1]
 gi|295891409|gb|EFG71196.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia sp.
           Ch1-1]
          Length = 413

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 11/68 (16%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             LR++    E CI C  CE  CP  AIT +              Y +    C  C  C 
Sbjct: 8   EVLRQHLIDPEICIRCNTCEETCPVDAITHDDN-----------NYVVKADICNGCMACV 56

Query: 111 EACPVDAI 118
             CP  AI
Sbjct: 57  PPCPTGAI 64



 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/26 (53%), Positives = 15/26 (57%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPN 123
           ID   CI C  C+E CPVDAI    N
Sbjct: 15  IDPEICIRCNTCEETCPVDAITHDDN 40


>gi|33601102|ref|NP_888662.1| putative iron-sulfur binding protein [Bordetella bronchiseptica
           RB50]
 gi|33575537|emb|CAE32615.1| putative iron-sulfur binding protein [Bordetella bronchiseptica
           RB50]
          Length = 705

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 9/79 (11%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + C  C  C + CP+ A+             ++ +  +    C+ CGLC   CP +AI
Sbjct: 572 DSDACTLCMSCVSACPSNALLDNP---------QSPQLRMVEKNCVQCGLCATTCPENAI 622

Query: 119 VEGPNFEFATETRQELYYD 137
              P    A   R+ +  +
Sbjct: 623 TLVPRLLLAPRRREAVVLN 641



 Score = 40.5 bits (93), Expect = 0.072,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 9/55 (16%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C+ C  IC A+AI+ +S            R  ++   C+ CG C   CP  A+
Sbjct: 323 VGCRACIDICSARAISSDS---------HHQRIVVNPNLCVGCGACTTVCPSGAL 368



 Score = 34.3 bits (77), Expect = 5.3,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 13/30 (43%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           ID+  C  C  C  ACP  AI      + A
Sbjct: 200 IDLDLCTRCNACISACPDGAIGLDYQVDTA 229


>gi|328905957|gb|EGG25733.1| pyruvate-flavodoxin oxidoreductase [Propionibacterium sp. P08]
          Length = 1206

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 22/81 (27%), Gaps = 16/81 (19%)

Query: 58  NGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTVRYDIDMI 101
                CI C  C  +CP   I                   +               I   
Sbjct: 695 WEPNACIQCGNCAFVCPHGVIRAKYYPQSQLEGAPESFQSAELNAAGLPESCYTLQIVPD 754

Query: 102 KCIYCGLCQEACPVDAIVEGP 122
           +C  CGLC EACP   I E  
Sbjct: 755 QCTGCGLCVEACPAHPIGEPD 775


>gi|313835283|gb|EFS72997.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL037PA2]
 gi|314928233|gb|EFS92064.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL044PA1]
 gi|314970064|gb|EFT14162.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL037PA3]
          Length = 1204

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 22/81 (27%), Gaps = 16/81 (19%)

Query: 58  NGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTVRYDIDMI 101
                CI C  C  +CP   I                   +               I   
Sbjct: 693 WEPNACIQCGNCAFVCPHGVIRAKYYPQSQLEGAPESFQSAELNAAGLPESCYTLQIVPD 752

Query: 102 KCIYCGLCQEACPVDAIVEGP 122
           +C  CGLC EACP   I E  
Sbjct: 753 QCTGCGLCVEACPAHPIGEPD 773


>gi|322437052|ref|YP_004219264.1| formate dehydrogenase, alpha subunit [Acidobacterium sp. MP5ACTX9]
 gi|321164779|gb|ADW70484.1| formate dehydrogenase, alpha subunit [Acidobacterium sp. MP5ACTX9]
          Length = 1008

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 3/93 (3%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---Y 96
           +      +  + +   Y     +CI C  C   C +  +             R +     
Sbjct: 143 RPYMEKPYEKDMSNPFYRYDPNQCILCGRCVEACQSVQVNETLTINWESEHPRVLWDGGE 202

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
            I+   C+ CG C   CP +A++E      A  
Sbjct: 203 KIEGSSCVSCGHCVTVCPCNALMEKTMIGHAGY 235



 Score = 38.5 bits (88), Expect = 0.28,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 22/71 (30%), Gaps = 13/71 (18%)

Query: 54  RRYPNGEERCIACKL----CEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C             QA      P   D +    RYD    +
Sbjct: 108 RILQNHMLYCTVCDNNNQNCTVHNATADLDVKHQARPYMEKPYEKDMSNPFYRYD--PNQ 165

Query: 103 CIYCGLCQEAC 113
           CI CG C EAC
Sbjct: 166 CILCGRCVEAC 176


>gi|288926084|ref|ZP_06420012.1| NADH-ubiquinone oxidoreductase, NQO9 subunit (NQO9) [Prevotella
           buccae D17]
 gi|288337124|gb|EFC75482.1| NADH-ubiquinone oxidoreductase, NQO9 subunit (NQO9) [Prevotella
           buccae D17]
          Length = 94

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 29/63 (46%)

Query: 78  ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
             + + P      R+ + Y  D+  C++C LC  AC  DAI    +FE A   R +L   
Sbjct: 4   HEMVADPETGKKKRQLIDYQYDLGDCMFCQLCVNACNFDAIEFTNDFEQAVFDRSKLVLH 63

Query: 138 KER 140
            ++
Sbjct: 64  LDK 66


>gi|260494607|ref|ZP_05814737.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Fusobacterium sp.
           3_1_33]
 gi|260197769|gb|EEW95286.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Fusobacterium sp.
           3_1_33]
          Length = 657

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 40/112 (35%), Gaps = 18/112 (16%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA--------------ITIESG 83
           FE G+ +   RG        N  ++CI C  C  +CP  A                  + 
Sbjct: 144 FENGTAAFEKRGVAVDVPIWN-VDKCIQCNQCSYVCPHAAIRPFLINEKELKAAPMPFAT 202

Query: 84  PRCHDGTRRTVRYDIDMI--KCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
            +        + Y I +    C+ CG C   CP +A+   P  E + E  ++
Sbjct: 203 KKAAGKGLDGLVYRIQVSALDCVGCGSCANVCPANALDMRPIAE-SLEAHED 253


>gi|258406380|ref|YP_003199122.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfohalobium
           retbaense DSM 5692]
 gi|257798607|gb|ACV69544.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfohalobium
           retbaense DSM 5692]
          Length = 807

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 35/113 (30%), Gaps = 10/113 (8%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPR---FRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79
            L    + K T     E  S +     FR   +    P     C+AC  C A+CP    +
Sbjct: 209 ALGTLVQRKVTAFTQTEVTSITKHEGNFRARLSSAAQPVDPAACVACGACSAVCPEFGHS 268

Query: 80  IESGP-------RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
             +                    Y I    C  CG C+E CP  AI      E
Sbjct: 269 GFNEGLFARKAIDKDAPRAVPDAYTILDDVCTRCGACEEVCPAGAIDLKAEPE 321



 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 11/59 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
             E CI C++CE +CP  AI +       D              C  CGLC  ACP  A
Sbjct: 596 NRETCIQCRMCETVCPHGAIRLTEEGMVAD-----------PAFCQACGLCAAACPTHA 643



 Score = 37.4 bits (85), Expect = 0.75,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPVDAIVEGPN 123
           +A  + + P  H G +   ++   + +  CI C +C+  CP  AI     
Sbjct: 571 KAAAMTALPALHFGQKTPPKHSSHLNRETCIQCRMCETVCPHGAIRLTEE 620


>gi|220935361|ref|YP_002514260.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219996671|gb|ACL73273.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 648

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 19/59 (32%), Gaps = 4/59 (6%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            C  C  C   CP  A+          G      Y     KC+ C +C E CP   I  
Sbjct: 590 MCFECDNCVIYCPQTAVYRVPKKEAATGRYVATDY----AKCVGCHICAEVCPTGYIDM 644


>gi|207109994|ref|ZP_03244156.1| NADH dehydrogenase subunit I [Helicobacter pylori HPKX_438_CA4C1]
          Length = 68

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 21/45 (46%)

Query: 4  FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFR 48
          F+  +      +      L ++ FF    TI+YP E+   SPR+R
Sbjct: 22 FKDTIKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYR 66


>gi|54309051|ref|YP_130071.1| iron-sulfur cluster-binding protein [Photobacterium profundum SS9]
 gi|46913483|emb|CAG20269.1| hypothetical iron-sulfur cluster-binding protein [Photobacterium
           profundum SS9]
          Length = 581

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 9/75 (12%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C  C  C A+CP +A     G              +    CI CGLC++ACP   +  
Sbjct: 447 DDCTLCMSCVAVCPTRAFHAVGGRPG---------LQLIEEDCIQCGLCEKACPEKVLTL 497

Query: 121 GPNFEFATETRQELY 135
            P F +  ETR+   
Sbjct: 498 KPGFNWNAETRKAAV 512



 Score = 35.5 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 11/53 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C   CPA A++                 +I+   C   G C  ACP +AI
Sbjct: 210 CNRCVDACPAGALSSIGHA-----------IEINPYLCQGVGTCATACPTEAI 251


>gi|296242128|ref|YP_003649615.1| pyruvate ferredoxin oxidoreductase subunit delta [Thermosphaera
           aggregans DSM 11486]
 gi|296094712|gb|ADG90663.1| pyruvate ferredoxin oxidoreductase, delta subunit [Thermosphaera
           aggregans DSM 11486]
          Length = 93

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 11/67 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              +C  C LC   CP  AI  +                ++   C  CG+C   CPV AI
Sbjct: 36  DHNKCTKCMLCWLFCPDMAIVWDGEK-----------IQVNYDYCKGCGICAHECPVKAI 84

Query: 119 VEGPNFE 125
              P FE
Sbjct: 85  SMIPEFE 91


>gi|94264130|ref|ZP_01287928.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase:4Fe-4S
           ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
 gi|93455466|gb|EAT05660.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase:4Fe-4S
           ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
          Length = 938

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 6/63 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +E CI C LC+++CP QAI I              + +     C  CG+C   CPV AI
Sbjct: 864 DKETCIGCGLCQSLCPYQAIRIAKDDNNK------RKAETITASCKGCGICAAHCPVFAI 917

Query: 119 VEG 121
             G
Sbjct: 918 SMG 920



 Score = 41.2 bits (95), Expect = 0.049,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 29/94 (30%), Gaps = 12/94 (12%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP-------RCHDGTRRTVRY 96
             +F     +R      ++C AC +C   CP   +   +                    Y
Sbjct: 24  PGKFSARLRVRPRYIDADKCTACGMCTQYCPRHLVDDYNEGLALTRPIHIDYPQAVPASY 83

Query: 97  DIDMIKCIY-----CGLCQEACPVDAIVEGPNFE 125
            ID   C++     C +C  AC   AI      E
Sbjct: 84  FIDPEACLHLKHGTCKICVSACQTRAIDFAQEAE 117



 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 14/31 (45%)

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                +D   CI CGLCQ  CP  AI    +
Sbjct: 858 PTVSTVDKETCIGCGLCQSLCPYQAIRIAKD 888


>gi|90418463|ref|ZP_01226375.1| putative 4Fe-4S ferredoxin [Aurantimonas manganoxydans SI85-9A1]
 gi|90338135|gb|EAS51786.1| putative 4Fe-4S ferredoxin [Aurantimonas manganoxydans SI85-9A1]
          Length = 680

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 9/82 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +ERC  C  C + CPA A+    G                   C+ CG+C   CP  AI
Sbjct: 518 DKERCTLCMACVSACPADALRDTPGKPEL---------RFVEAACVQCGICAATCPETAI 568

Query: 119 VEGPNFEFATETRQELYYDKER 140
              P +  A    Q +  +++ 
Sbjct: 569 TLDPRYNLAPTVMQPVTLNEDE 590



 Score = 34.7 bits (78), Expect = 3.9,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 12/50 (24%)

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E                   +       ID   C  CG C   CP  A+
Sbjct: 277 HERSKKTGCTKCIDNCPPSAISPDGDNILIDTAICGGCGNCAAHCPTGAV 326


>gi|50121206|ref|YP_050373.1| electron transport complex protein RnfC [Pectobacterium
           atrosepticum SCRI1043]
 gi|81693263|sp|Q6D4W2|RNFC_ERWCT RecName: Full=Electron transport complex protein rnfC; AltName:
           Full=Nitrogen fixation protein rnfC
 gi|49611732|emb|CAG75181.1| electron transport complex protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 693

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 33/103 (32%), Gaps = 12/103 (11%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ CI C  C   CPA  +  +       G       D  +  CI CG C   CP    
Sbjct: 373 EEQSCIRCSKCADACPAG-LLPQQLYWFSRGQEHEKARDHHLFDCIECGACAYVCP---- 427

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161
               N       RQE    K  +    +  +   +  +  D+ 
Sbjct: 428 ---SNIPLVQYYRQE----KAEIRAIDEDAQRAALAKVRFDAK 463


>gi|320156338|ref|YP_004188717.1| iron-sulfur cluster-binding protein [Vibrio vulnificus MO6-24/O]
 gi|319931650|gb|ADV86514.1| iron-sulfur cluster-binding protein [Vibrio vulnificus MO6-24/O]
          Length = 552

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 36/104 (34%), Gaps = 12/104 (11%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T   P E   T        A+     G   C  C  C A+CP +A+  +          
Sbjct: 391 ATSRVPVENTVTLSSHAPYGAVSCATTG---CTLCMSCVAVCPTRALHTDGE-------- 439

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            +         C+ CGLC +ACP   +   P   +  E+RQ   
Sbjct: 440 -SPSLQFVEQDCVQCGLCTKACPEQVLTLTPRMNWDKESRQAAV 482



 Score = 39.3 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           C+ C   CPA A+T +   +           +I+   C   G C  +CP +AI 
Sbjct: 185 CERCVDACPAGALTSQGSDKTGH------HIEINPYLCQGVGTCATSCPTEAIH 232


>gi|183231113|ref|XP_656317.2| dihydropyrimidine dehydrogenase [Entamoeba histolytica HM-1:IMSS]
 gi|169802613|gb|EAL50934.2| dihydropyrimidine dehydrogenase, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 901

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 32/86 (37%), Gaps = 8/86 (9%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G    R   + +  CI C  C   C   + T           +   RY +D  KCI C L
Sbjct: 817 GPEKWRVNAHIKNNCIGCGSCALSCRDNSTTAI--------VKDGNRYRVDDEKCIGCAL 868

Query: 109 CQEACPVDAIVEGPNFEFATETRQEL 134
           C   CPV+AI           T +EL
Sbjct: 869 CSSVCPVNAIEYVKVKGLNEMTPEEL 894


>gi|91784376|ref|YP_559582.1| benzoyl-CoA oxygenase, component A [Burkholderia xenovorans LB400]
 gi|91688330|gb|ABE31530.1| benzoyl-CoA oxygenase, component A [Burkholderia xenovorans LB400]
          Length = 413

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 11/68 (16%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             LR++    E CI C  CE  CP  AIT +              Y +    C  C  C 
Sbjct: 8   EVLRQHLIDPEICIRCNTCEETCPVDAITHDDN-----------NYVVKADICNGCMACV 56

Query: 111 EACPVDAI 118
             CP  AI
Sbjct: 57  PPCPTGAI 64



 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/26 (53%), Positives = 15/26 (57%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPN 123
           ID   CI C  C+E CPVDAI    N
Sbjct: 15  IDPEICIRCNTCEETCPVDAITHDDN 40


>gi|85860895|ref|YP_463097.1| glutamate synthase (NADPH) [Syntrophus aciditrophicus SB]
 gi|85723986|gb|ABC78929.1| glutamate synthase (NADPH) [Syntrophus aciditrophicus SB]
          Length = 777

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/107 (15%), Positives = 27/107 (25%), Gaps = 6/107 (5%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           +      +            P E+   +                  C +C  C      +
Sbjct: 673 IRGRKETMGQL------QPMPAERVKMAYFEPWLPENADVTAWSRVCASCGSCRDCGLCE 726

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           AI  ++     D +     Y     +CI CG C   CP        N
Sbjct: 727 AICPQNAIFRLDKSSGAFEYRSRAERCIGCGFCAGVCPTGVWRLVEN 773


>gi|289523836|ref|ZP_06440690.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289502926|gb|EFD24090.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 579

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 10/77 (12%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             L      +  CI C  C  +CPA+AI+ E              + +D +KC+ CG C 
Sbjct: 513 QGLFVANINQGSCIGCGQCAKVCPAKAISGE----------VRKPHVVDALKCVGCGQCM 562

Query: 111 EACPVDAIVEGPNFEFA 127
           + CP ++I      E A
Sbjct: 563 DICPTNSITSSRRGEIA 579



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/47 (29%), Positives = 16/47 (34%), Gaps = 6/47 (12%)

Query: 78  ITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEACPVDAI 118
              E      DG  R           I+   CI CG C + CP  AI
Sbjct: 494 YFHEEYEEHVDGYCRAGVCQGLFVANINQGSCIGCGQCAKVCPAKAI 540


>gi|89096782|ref|ZP_01169674.1| formate dehydrogenase chain A [Bacillus sp. NRRL B-14911]
 gi|89088797|gb|EAR67906.1| formate dehydrogenase chain A [Bacillus sp. NRRL B-14911]
          Length = 990

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 3/84 (3%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---Y 96
           +   S  +  + +   Y    ++CI C  C   C    +          G  R +     
Sbjct: 125 RPHRSKGYEVDMSHPFYRYDPDQCILCGRCVETCQDLQVNETLTIDWETGQPRVLWDGGK 184

Query: 97  DIDMIKCIYCGLCQEACPVDAIVE 120
            I+   C+ CG C   CP +A++E
Sbjct: 185 SINESSCVSCGQCVSVCPCNALME 208


>gi|325846909|ref|ZP_08169766.1| pyruvate synthase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481151|gb|EGC84195.1| pyruvate synthase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 1177

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 40/133 (30%), Gaps = 31/133 (23%)

Query: 24  LRYFFKA---------KTTINYPFEKGS----TSPRFRGEHALRRYPNGEERCIACKLCE 70
           ++   +            +   P++ G     TS   +   AL       + CI C  C 
Sbjct: 639 IKNMVRPIINLKEDDLPVSTYLPYDDGQYMAGTSRYEKRGIALFVPEWNIDNCIQCNQCS 698

Query: 71  AICPAQAITI-----ESGPRCHDGTR-----------RTVRYDIDMIKCIYCGLCQEAC- 113
            ICP   I       E   +  +G                R  +    C+ CG C + C 
Sbjct: 699 YICPHATIRPFLLDEEQKAKAPEGFETKKAIGKGLEGYEFRIQVSPYDCMGCGNCVDVCP 758

Query: 114 -PVDAIVEGPNFE 125
            P  A+   P  E
Sbjct: 759 APKKALAMKPIDE 771


>gi|323478518|gb|ADX83756.1| formate dehydrogenase, alpha subunit [Sulfolobus islandicus
           HVE10/4]
          Length = 979

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQE 111
            Y     +CI C  C   C   A+             R V  +   I    C+ CG C  
Sbjct: 139 FYVYDPSQCILCGRCVEACQDFAVNEVIWINWDLNPPRVVWDNGNPIGNSSCVNCGTCVT 198

Query: 112 ACPVDAIVE 120
            CPV+A++E
Sbjct: 199 VCPVNALME 207



 Score = 40.5 bits (93), Expect = 0.073,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 27/80 (33%), Gaps = 7/80 (8%)

Query: 48  RGEHALRRYPNGEERCIACKL-------CEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100
           R     R     +  C  C+         E++      + +   R +        Y  D 
Sbjct: 85  RKTAISRILRYHKLYCSMCENNNGDCVLHESVIKLNINSQKYIERPYQVDDSGPFYVYDP 144

Query: 101 IKCIYCGLCQEACPVDAIVE 120
            +CI CG C EAC   A+ E
Sbjct: 145 SQCILCGRCVEACQDFAVNE 164


>gi|323475906|gb|ADX86512.1| formate dehydrogenase, alpha subunit [Sulfolobus islandicus REY15A]
          Length = 979

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQE 111
            Y     +CI C  C   C   A+             R V  +   I    C+ CG C  
Sbjct: 139 FYVYDPSQCILCGRCVEACQDFAVNEVIWINWDLNPPRVVWDNGNPIGNSSCVNCGTCVT 198

Query: 112 ACPVDAIVE 120
            CPV+A++E
Sbjct: 199 VCPVNALME 207



 Score = 40.5 bits (93), Expect = 0.073,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 27/80 (33%), Gaps = 7/80 (8%)

Query: 48  RGEHALRRYPNGEERCIACKL-------CEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100
           R     R     +  C  C+         E++      + +   R +        Y  D 
Sbjct: 85  RKTAISRILRYHKLYCSMCENNNGDCVLHESVIKLNINSQKYIERPYQVDDSGPFYVYDP 144

Query: 101 IKCIYCGLCQEACPVDAIVE 120
            +CI CG C EAC   A+ E
Sbjct: 145 SQCILCGRCVEACQDFAVNE 164


>gi|256544397|ref|ZP_05471772.1| pyruvate-ferredoxin oxidoreductase [Anaerococcus vaginalis ATCC
           51170]
 gi|256399929|gb|EEU13531.1| pyruvate-ferredoxin oxidoreductase [Anaerococcus vaginalis ATCC
           51170]
          Length = 1177

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 40/133 (30%), Gaps = 31/133 (23%)

Query: 24  LRYFFKA---------KTTINYPFEKGS----TSPRFRGEHALRRYPNGEERCIACKLCE 70
           ++   +            +   P++ G     TS   +   AL       + CI C  C 
Sbjct: 639 IKNMVRPIINLEEDDLPVSTYLPYDDGQYMAGTSRYEKRGIALFVPEWNIDNCIQCNQCS 698

Query: 71  AICPAQAITI-----ESGPRCHDGTR-----------RTVRYDIDMIKCIYCGLCQEAC- 113
            ICP   I       E   +  +G                R  +    C+ CG C + C 
Sbjct: 699 YICPHATIRPFLLDEEQKAKAPEGFETKKAIGKGLEGYEFRIQVSPYDCMGCGNCVDVCP 758

Query: 114 -PVDAIVEGPNFE 125
            P  A+   P  E
Sbjct: 759 APKKALAMKPIDE 771


>gi|212696683|ref|ZP_03304811.1| hypothetical protein ANHYDRO_01224 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676414|gb|EEB36021.1| hypothetical protein ANHYDRO_01224 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 1177

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 40/133 (30%), Gaps = 31/133 (23%)

Query: 24  LRYFFKA---------KTTINYPFEKGS----TSPRFRGEHALRRYPNGEERCIACKLCE 70
           ++   +            +   P++ G     TS   +   AL       + CI C  C 
Sbjct: 639 IKNMVRPIINLKEDDLPVSTYLPYDDGQYMAGTSRYEKRGIALFVPEWNIDNCIQCNQCS 698

Query: 71  AICPAQAITI-----ESGPRCHDGTR-----------RTVRYDIDMIKCIYCGLCQEAC- 113
            ICP   I       E   +  +G                R  +    C+ CG C + C 
Sbjct: 699 YICPHATIRPFLLDEEQKAKAPEGFETKKAIGKGLEGYEFRIQVSPYDCMGCGNCVDVCP 758

Query: 114 -PVDAIVEGPNFE 125
            P  A+   P  E
Sbjct: 759 APKKALAMKPIDE 771


>gi|295111644|emb|CBL28394.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric
           [Synergistetes bacterium SGP1]
          Length = 1201

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 40/117 (34%), Gaps = 26/117 (22%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITI------------------ESGPRCHDG 89
           RG        NG E+CI C  C  +CP  AI                    +   +    
Sbjct: 682 RGVAVNVPEWNG-EKCIQCNQCSMVCPHAAIRPFLLDAAEQEAAPKDFGAVDPKAKALKE 740

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP------NFEFATETRQELYYDKER 140
                +  +D + C+ CG C + CPV A+   P        +  T   +    DK++
Sbjct: 741 AGYRYKIQVDTLDCLGCGNCADICPVKALEMKPTASQEGEIDNWTYAVEG-VADKDK 796


>gi|291538469|emb|CBL11580.1| Iron only hydrogenase large subunit, C-terminal domain [Roseburia
           intestinalis XB6B4]
          Length = 482

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110
                +C  C  C   CP  AI     P         + Y+      ID  KCI CG C 
Sbjct: 124 HIDPSKCKECGRCAQACPYNAIAHLKRPCKFSCPVNAITYNEYGISVIDKEKCIRCGKCI 183

Query: 111 EACPVDAI 118
            +CP  AI
Sbjct: 184 HSCPFGAI 191


>gi|169837543|ref|ZP_02870731.1| electron transport complex protein RnfC [candidate division TM7
           single-cell isolate TM7a]
          Length = 501

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 33/103 (32%), Gaps = 6/103 (5%)

Query: 16  FVGAFFLCL--RYFFKAKT--TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71
            V    +    +  F      T  +   +  T     G   L       + CI+C  C  
Sbjct: 137 IVRELKITNEDKVIFGGPMMGTEIF-DSRVPTVKGTSGILFLDTEEIERKSCISCGYCVE 195

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            CP   +  E      +G +       ++  CI CG C+  CP
Sbjct: 196 ACPMNLMPFEFADYYKNG-KYEKMATANIQNCIECGACEFVCP 237



 Score = 37.8 bits (86), Expect = 0.47,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 4/33 (12%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           +I+   CI CG C EACP   +   P FEFA  
Sbjct: 181 EIERKSCISCGYCVEACP---MNLMP-FEFADY 209


>gi|150015217|ref|YP_001307471.1| ferredoxin hydrogenase [Clostridium beijerinckii NCIMB 8052]
 gi|149901682|gb|ABR32515.1| Ferredoxin hydrogenase [Clostridium beijerinckii NCIMB 8052]
          Length = 496

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 7/69 (10%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-------DIDMIKCIYCGLC 109
               ++C  C +C+  CP  A+  +  P         + Y       +I   KC+ CG C
Sbjct: 135 YIDPDKCKECGMCKKACPYDAVAEDMRPCKKSCPTGALSYNAEDLSAEITESKCVNCGAC 194

Query: 110 QEACPVDAI 118
             ACP  AI
Sbjct: 195 MSACPFGAI 203



 Score = 37.4 bits (85), Expect = 0.63,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 13/60 (21%)

Query: 63  CIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           C  C    C++ C   AIT   G           R  ID  KC  CG+C++ACP DA+ E
Sbjct: 110 CRNCIAHKCQSACNFGAITYVDG-----------RAYIDPDKCKECGMCKKACPYDAVAE 158


>gi|323498950|ref|ZP_08103933.1| formate dehydrogenase, alpha subunit [Vibrio sinaloensis DSM 21326]
 gi|323316062|gb|EGA69090.1| formate dehydrogenase, alpha subunit [Vibrio sinaloensis DSM 21326]
          Length = 1402

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 14/79 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIE--------------SGPRCHDGTRRTVRYDIDMIKCI 104
              RCI+C  C   C  QA+                    R H G+ +  R  +    C+
Sbjct: 631 DANRCISCGQCIQACSEQAVHGILNFIHDQHGRPALRPDDRPHFGSSKNGRLLMGDSNCV 690

Query: 105 YCGLCQEACPVDAIVEGPN 123
            CG C +ACP  A+V+  +
Sbjct: 691 QCGACVQACPTGAMVDSRD 709



 Score = 34.7 bits (78), Expect = 3.9,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 21/72 (29%), Gaps = 9/72 (12%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P ++        G   +     G+  C+ C  C   CP  A+                  
Sbjct: 668 PDDRPHFGSSKNGRLLM-----GDSNCVQCGACVQACPTGAMVDSRDRSQGREEVLHQVD 722

Query: 97  DIDMIKCIYCGL 108
            I    C YCG+
Sbjct: 723 TI----CTYCGV 730


>gi|282897271|ref|ZP_06305273.1| ferredoxin (flavodoxin) oxidoreductase [Raphidiopsis brookii D9]
 gi|281197923|gb|EFA72817.1| ferredoxin (flavodoxin) oxidoreductase [Raphidiopsis brookii D9]
          Length = 1201

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/134 (17%), Positives = 37/134 (27%), Gaps = 30/134 (22%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPR 85
              TS   +   A        + CI C  C  +CP                A        
Sbjct: 679 PTGTSKWEKRNIAQEIPVWDPQVCIQCGKCVMVCPHSVIRSKVYQPEELVNAPPTFKTAN 738

Query: 86  CHDGTRRTVRYDID--MIKCIYCGLCQEACP--------VDAIVEGPNFEFATETRQ--E 133
             +     +++ I      C  C LC + CP          AI          + R+  +
Sbjct: 739 AKEHDWHELKFTIQVAAEDCTGCALCVDVCPAKNKAEPKKKAINMVQQRPLREQERENWD 798

Query: 134 LYYDKERLLNNGDR 147
            + +    L N DR
Sbjct: 799 FFLN----LPNPDR 808


>gi|229585934|ref|YP_002844436.1| formate dehydrogenase, alpha subunit [Sulfolobus islandicus
           M.16.27]
 gi|228020984|gb|ACP56391.1| formate dehydrogenase, alpha subunit [Sulfolobus islandicus
           M.16.27]
          Length = 979

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQE 111
            Y     +CI C  C   C   A+             R V  +   I    C+ CG C  
Sbjct: 139 FYVYDPSQCILCGRCVEACQDFAVNEVIWINWDLNPPRVVWDNGNPIGNSSCVNCGTCVT 198

Query: 112 ACPVDAIVE 120
            CPV+A++E
Sbjct: 199 VCPVNALME 207



 Score = 40.5 bits (93), Expect = 0.089,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 7/86 (8%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKL-------CEAICPAQAITIESGPRCHDGTRRTV 94
             S   R     R     +  C  C+         E++      + +   + +       
Sbjct: 79  KRSMEARKTAISRILRYHKLYCSMCENNNGDCVLHESVIKLNINSQKYIEKPYQVDDSGP 138

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVE 120
            Y  D  +CI CG C EAC   A+ E
Sbjct: 139 FYVYDPSQCILCGRCVEACQDFAVNE 164


>gi|117164510|emb|CAJ88056.1| putative ferredoxin reductase [Streptomyces ambofaciens ATCC 23877]
          Length = 510

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 5/72 (6%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C +   C ++CP   I      +       T    ID   CI CG C +ACPVDAI  
Sbjct: 7   QTCCSDATCVSVCPVNCIRPTPEEQA---FGSTEMLHIDPKTCIDCGACADACPVDAIF- 62

Query: 121 GPNFEFATETRQ 132
            P        R+
Sbjct: 63  -PVESLTAGQRE 73


>gi|325967871|ref|YP_004244063.1| pyruvate:ferredoxin oxidoreductase (POR), delta subunit
           [Vulcanisaeta moutnovskia 768-28]
 gi|323707074|gb|ADY00561.1| Pyruvate:ferredoxin oxidoreductase (POR), delta subunit
           [Vulcanisaeta moutnovskia 768-28]
          Length = 106

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRC-HDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
            ++ CI C++C   CP  AI     P     G +  + Y+ID   C  CG+C   CPV A
Sbjct: 38  DQDACIRCRICWMYCPEPAILELKKPYTTKSGKKYDLTYEIDYDHCKGCGICAHECPVKA 97

Query: 118 IVEGPN 123
           I     
Sbjct: 98  IKMVSE 103


>gi|167386568|ref|XP_001737815.1| dihydropyrimidine dehydrogenase [Entamoeba dispar SAW760]
 gi|165899267|gb|EDR25906.1| dihydropyrimidine dehydrogenase, putative [Entamoeba dispar SAW760]
          Length = 901

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 32/86 (37%), Gaps = 8/86 (9%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G    R   + +  CI C  C   C   + T           +   RY +D  KCI C L
Sbjct: 817 GPEKWRVNAHIKNNCIGCGSCALSCRDNSTTAI--------VKDGNRYRVDDEKCIGCAL 868

Query: 109 CQEACPVDAIVEGPNFEFATETRQEL 134
           C   CPV+AI           T +EL
Sbjct: 869 CSSVCPVNAIEYVKVKGLNEMTPEEL 894


>gi|302876987|ref|YP_003845620.1| nitroreductase [Clostridium cellulovorans 743B]
 gi|307687678|ref|ZP_07630124.1| nitroreductase [Clostridium cellulovorans 743B]
 gi|302579844|gb|ADL53856.1| nitroreductase [Clostridium cellulovorans 743B]
          Length = 273

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 37/108 (34%), Gaps = 16/108 (14%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 E+CI C  C   C  + I +  G              I    C  CG C   CP
Sbjct: 1   MMKVNAEKCIGCGQCIKDCFPRDIEMVDGKAI-----------IKNEACFKCGHCIAVCP 49

Query: 115 VDAIVEGPNF---EFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
            +A+     +   E     ++E   + ERLL N  ++   + +    +
Sbjct: 50  KEAVS-TDEYNMEEVKNYQKEEFEIEPERLL-NFIKFRRTVRQFRNKE 95


>gi|238620908|ref|YP_002915734.1| formate dehydrogenase, alpha subunit [Sulfolobus islandicus M.16.4]
 gi|238381978|gb|ACR43066.1| formate dehydrogenase, alpha subunit [Sulfolobus islandicus M.16.4]
          Length = 979

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQE 111
            Y     +CI C  C   C   A+             R V  +   I    C+ CG C  
Sbjct: 139 FYVYDPSQCILCGRCVEACQDFAVNEVIWINWDLNPPRVVWDNGNPIGKSSCVNCGTCVT 198

Query: 112 ACPVDAIVE 120
            CPV+A++E
Sbjct: 199 VCPVNALME 207



 Score = 40.1 bits (92), Expect = 0.095,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 7/86 (8%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKL-------CEAICPAQAITIESGPRCHDGTRRTV 94
             S   R     R     +  C  C+         E++      + +   + +       
Sbjct: 79  KRSMEARKTAISRILRYHKLYCSMCENNNGDCVLHESVIKLNINSQKYIEKPYQVDDSGP 138

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVE 120
            Y  D  +CI CG C EAC   A+ E
Sbjct: 139 FYVYDPSQCILCGRCVEACQDFAVNE 164


>gi|228909379|ref|ZP_04073204.1| formate dehydrogenase [Bacillus thuringiensis IBL 200]
 gi|228850156|gb|EEM94985.1| formate dehydrogenase [Bacillus thuringiensis IBL 200]
          Length = 979

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 7/96 (7%)

Query: 33  TINYPFE-KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
              YP+E K   S           Y     +CIAC  C  +C    +             
Sbjct: 123 HQKYPYEPKVDVSEVDMTHP---FYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERP 179

Query: 92  RTVR---YDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           R +     +I+   C+ CG C   CP +A++E   F
Sbjct: 180 RVIWDEGVNINDSSCVSCGQCVTICPCNALMEKTMF 215



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 91  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|229580377|ref|YP_002838777.1| formate dehydrogenase, alpha subunit [Sulfolobus islandicus
           Y.G.57.14]
 gi|228011093|gb|ACP46855.1| formate dehydrogenase, alpha subunit [Sulfolobus islandicus
           Y.G.57.14]
          Length = 979

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQE 111
            Y     +CI C  C   C   A+             R V  +   I    C+ CG C  
Sbjct: 139 FYVYDPSQCILCGRCVEACQDFAVNEVIWINWDLNPPRVVWDNGNPIGNSSCVNCGTCVT 198

Query: 112 ACPVDAIVE 120
            CPV+A++E
Sbjct: 199 VCPVNALME 207



 Score = 40.1 bits (92), Expect = 0.091,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 7/86 (8%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKL-------CEAICPAQAITIESGPRCHDGTRRTV 94
             S   R     R     +  C  C+         E++      + +   + +       
Sbjct: 79  KRSMEARKTAISRILRYHKLYCSMCENNNGDCVLHESVIKLNINSQKYIEKPYQVDDSGP 138

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVE 120
            Y  D  +CI CG C EAC   A+ E
Sbjct: 139 FYVYDPSQCILCGRCVEACQDFAVNE 164


>gi|220905145|ref|YP_002480457.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219869444|gb|ACL49779.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 192

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 37/108 (34%), Gaps = 10/108 (9%)

Query: 20  FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79
             +  R   +  +T  +P  +  T  R RG   +       + C+ C +C   C A AI 
Sbjct: 5   LKVLFRNLLEGPSTDPFPLGETFTPERLRGRAVV-----DPDLCMGCGICRHSCAAGAIH 59

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           I   P             I    C  C  C+  CP  A+    ++  A
Sbjct: 60  IGQLPDSSG-----FTITIWQNSCCLCASCRHYCPTGAMSISTDWHSA 102


>gi|160947614|ref|ZP_02094781.1| hypothetical protein PEPMIC_01549 [Parvimonas micra ATCC 33270]
 gi|158446748|gb|EDP23743.1| hypothetical protein PEPMIC_01549 [Parvimonas micra ATCC 33270]
          Length = 531

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 15/93 (16%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
           ++F+ +   +   +K                     +C+ C  C   CP   IT      
Sbjct: 451 HYFRNEYEAHIYDKKCPAGVCQALLEFFITD-----KCVGCTKCAKACPVDCITGVQKE- 504

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                     + ID  KCI CG C+ ACPV+AI
Sbjct: 505 ---------LHVIDPSKCIKCGSCEAACPVNAI 528


>gi|227828716|ref|YP_002830496.1| formate dehydrogenase, subunit alpha [Sulfolobus islandicus
           M.14.25]
 gi|227460512|gb|ACP39198.1| formate dehydrogenase, alpha subunit [Sulfolobus islandicus
           M.14.25]
          Length = 979

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQE 111
            Y     +CI C  C   C   A+             R V  +   I    C+ CG C  
Sbjct: 139 FYVYDPSQCILCGRCVEACQDFAVNEVIWINWDLNPPRVVWDNGNPIGNSSCVNCGTCVT 198

Query: 112 ACPVDAIVE 120
            CPV+A++E
Sbjct: 199 VCPVNALME 207



 Score = 40.1 bits (92), Expect = 0.092,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 7/86 (8%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKL-------CEAICPAQAITIESGPRCHDGTRRTV 94
             S   R     R     +  C  C+         E++      + +   + +       
Sbjct: 79  KRSMEARKTAISRILRYHKLYCSMCENNNGDCVLHESVIKLNINSQKYIEKPYQVDDSGP 138

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVE 120
            Y  D  +CI CG C EAC   A+ E
Sbjct: 139 FYVYDPSQCILCGRCVEACQDFAVNE 164


>gi|221310658|ref|ZP_03592505.1| hypothetical protein Bsubs1_14876 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221314981|ref|ZP_03596786.1| hypothetical protein BsubsN3_14792 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221319902|ref|ZP_03601196.1| hypothetical protein BsubsJ_14703 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221324183|ref|ZP_03605477.1| hypothetical protein BsubsS_14847 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|321312247|ref|YP_004204534.1| putative oxidoreductase [Bacillus subtilis BSn5]
 gi|320018521|gb|ADV93507.1| putative oxido-reductase [Bacillus subtilis BSn5]
          Length = 979

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 4/91 (4%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+           + +   Y     +CIAC  C  +C    +             R
Sbjct: 123 HQKYPYTPKEDPSCAV-DMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWERERPR 181

Query: 93  TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120
            +  +   I+   C+ CG C   CP +A++E
Sbjct: 182 VIWDEGVPINESSCVSCGQCVTVCPCNALME 212


>gi|284998992|ref|YP_003420760.1| formate dehydrogenase, alpha subunit [Sulfolobus islandicus
           L.D.8.5]
 gi|284446888|gb|ADB88390.1| formate dehydrogenase, alpha subunit [Sulfolobus islandicus
           L.D.8.5]
          Length = 979

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQE 111
            Y     +CI C  C   C   A+             R V  +   I    C+ CG C  
Sbjct: 139 FYVYDPSQCILCGRCVEACQDFAVNEVIWINWDLNPPRVVWDNGNPIGNSSCVNCGTCVT 198

Query: 112 ACPVDAIVE 120
            CPV+A++E
Sbjct: 199 VCPVNALME 207



 Score = 40.1 bits (92), Expect = 0.095,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 7/86 (8%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKL-------CEAICPAQAITIESGPRCHDGTRRTV 94
             S   R     R     +  C  C+         E++      + +   + +       
Sbjct: 79  KRSMEARKTAISRILRYHKLYCSMCENNNGDCVLHESVIKLNINSQKYIEKPYQVDDSGP 138

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVE 120
            Y  D  +CI CG C EAC   A+ E
Sbjct: 139 FYVYDPSQCILCGRCVEACQDFAVNE 164


>gi|229580988|ref|YP_002839387.1| formate dehydrogenase, alpha subunit [Sulfolobus islandicus
           Y.N.15.51]
 gi|228011704|gb|ACP47465.1| formate dehydrogenase, alpha subunit [Sulfolobus islandicus
           Y.N.15.51]
          Length = 979

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQE 111
            Y     +CI C  C   C   A+             R V  +   I    C+ CG C  
Sbjct: 139 FYVYDPSQCILCGRCVEACQDFAVNEVIWINWDLNPPRVVWDNGNPIGNSSCVNCGTCVT 198

Query: 112 ACPVDAIVE 120
            CPV+A++E
Sbjct: 199 VCPVNALME 207



 Score = 40.5 bits (93), Expect = 0.085,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 7/86 (8%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKL-------CEAICPAQAITIESGPRCHDGTRRTV 94
             S   R     R     +  C  C+         E++      + +   + +       
Sbjct: 79  KRSMEARKNAISRILRYHKLYCSMCENNNGDCVLHESVIKLNINSQKYIEKPYQVDDSGP 138

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVE 120
            Y  D  +CI CG C EAC   A+ E
Sbjct: 139 FYVYDPSQCILCGRCVEACQDFAVNE 164


>gi|310658217|ref|YP_003935938.1| [fe] hydrogenase, electron-transfer subunit [Clostridium
           sticklandii DSM 519]
 gi|308824995|emb|CBH21033.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           sticklandii]
          Length = 625

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 10/69 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L +Y   EE+CI C  C  +CP   I+           +   ++ ID  +CI CG C +A
Sbjct: 567 LLKYMINEEKCIGCTKCAKVCPVSCISG----------KVKEKHVIDQNQCIKCGACFDA 616

Query: 113 CPVDAIVEG 121
           CPV+AI +G
Sbjct: 617 CPVNAITKG 625



 Score = 41.2 bits (95), Expect = 0.049,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 18/40 (45%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++         +  ++Y I+  KCI C  C + CPV  I
Sbjct: 553 HVQDKICPAGACQSLLKYMINEEKCIGCTKCAKVCPVSCI 592


>gi|291485126|dbj|BAI86201.1| hypothetical protein BSNT_03950 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 982

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 4/91 (4%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+           + +   Y     +CIAC  C  +C    +             R
Sbjct: 126 HQKYPYTPKEDPSCAV-DMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWERERPR 184

Query: 93  TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120
            +  +   I+   C+ CG C   CP +A++E
Sbjct: 185 VIWDEGVPINESSCVSCGQCVTVCPCNALME 215


>gi|218282605|ref|ZP_03488843.1| hypothetical protein EUBIFOR_01429 [Eubacterium biforme DSM 3989]
 gi|218216476|gb|EEC90014.1| hypothetical protein EUBIFOR_01429 [Eubacterium biforme DSM 3989]
          Length = 1182

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 27/87 (31%), Gaps = 15/87 (17%)

Query: 52  ALRRYPNGEERCIACKLCEAICPA-------------QAITIESGPRCHDGTRRTVRYDI 98
           A+       E+CI C  C  +C               +A   +             +Y +
Sbjct: 686 AVTVPEWDAEKCIQCNQCAFVCSHATIRPFLLSEEEVKAAPAQIKLADVKPKATEFKYTM 745

Query: 99  D--MIKCIYCGLCQEACPVDAIVEGPN 123
               + C+ CG C   CP  AI   P 
Sbjct: 746 SVSPLDCMGCGECITVCPTQAIKMVPQ 772


>gi|124028304|ref|YP_001013624.1| indolepyruvate oxidoreductase subunit [Hyperthermus butylicus DSM
           5456]
 gi|123978998|gb|ABM81279.1| indolepyruvate oxidoreductase subunit [Hyperthermus butylicus DSM
           5456]
          Length = 632

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 33/105 (31%), Gaps = 12/105 (11%)

Query: 19  AFFLCLRYFFKAK-TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA 77
                +  F +     +       +     R +   + Y    E+C +C  C  +    A
Sbjct: 535 GMARVVAEFLRKPGVNVIIAKHPCALLEA-RLKGVEKVYTVVPEKCTSCMACVKVTGCPA 593

Query: 78  ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           + +    +            I    C  CGLC   CP  AIVE P
Sbjct: 594 LYVTEDGKVG----------IVEEDCTGCGLCARFCPYGAIVEKP 628


>gi|33592565|ref|NP_880209.1| putative iron-sulfur binding protein [Bordetella pertussis Tohama
           I]
 gi|33572211|emb|CAE41759.1| putative iron-sulfur binding protein [Bordetella pertussis Tohama
           I]
 gi|332381983|gb|AEE66830.1| putative iron-sulfur binding protein [Bordetella pertussis CS]
          Length = 696

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 9/79 (11%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + C  C  C + CP+ A+             ++ +  +    C+ CGLC   CP +AI
Sbjct: 563 DSDACTLCMSCVSACPSNALLDNP---------QSPQLRMVEKNCVQCGLCATTCPENAI 613

Query: 119 VEGPNFEFATETRQELYYD 137
              P    A   R+ +  +
Sbjct: 614 TLVPRLLLAPRRREAVVLN 632



 Score = 42.0 bits (97), Expect = 0.029,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 9/58 (15%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           + C+ C  IC A+AI+ +S            R  ++   C+ CG C   CP  A+   
Sbjct: 314 VGCRACIDICSARAISSDS---------HHQRIVVNPSLCVGCGACTTVCPSGALTYT 362



 Score = 34.3 bits (77), Expect = 5.5,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 13/30 (43%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           ID+  C  C  C  ACP  AI      + A
Sbjct: 191 IDLDLCTRCNACISACPDGAIGLDYQVDTA 220


>gi|16079776|ref|NP_390600.1| oxidoreductase [Bacillus subtilis subsp. subtilis str. 168]
 gi|81415751|sp|Q795Y4|FDHL_BACSU RecName: Full=Putative formate dehydrogenase yrhE
 gi|2635168|emb|CAB14664.1| putative oxido-reductase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 980

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 4/91 (4%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+           + +   Y     +CIAC  C  +C    +             R
Sbjct: 124 HQKYPYTPKEDPSCAV-DMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWERERPR 182

Query: 93  TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120
            +  +   I+   C+ CG C   CP +A++E
Sbjct: 183 VIWDEGVPINESSCVSCGQCVTVCPCNALME 213


>gi|329119761|ref|ZP_08248439.1| electron transport complex protein RnfB [Neisseria bacilliformis
           ATCC BAA-1200]
 gi|327464124|gb|EGF10431.1| electron transport complex protein RnfB [Neisseria bacilliformis
           ATCC BAA-1200]
          Length = 281

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 30/83 (36%), Gaps = 12/83 (14%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           K   +P      AL      E  CI C  C   CP  AI   S           + + + 
Sbjct: 63  KPPLAPVKIQTPAL--AWIDEAACIGCTACIRACPVDAIMGASK----------LMHTVI 110

Query: 100 MIKCIYCGLCQEACPVDAIVEGP 122
             +C  CGLC   CPVD I   P
Sbjct: 111 AAECTGCGLCVAPCPVDCIHMRP 133


>gi|320162233|ref|YP_004175458.1| putative pyruvate:ferredoxin oxidoreductase [Anaerolinea
           thermophila UNI-1]
 gi|319996087|dbj|BAJ64858.1| putative pyruvate:ferredoxin oxidoreductase [Anaerolinea
           thermophila UNI-1]
          Length = 1190

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 28/108 (25%), Gaps = 24/108 (22%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVR 95
             AL       + CI C  C  +CP                A                 +
Sbjct: 684 NIALEIPVWEPDLCIQCGKCAMVCPHAVIRMKVYEPELLANAPATFKSIDAKFKEFPNTK 743

Query: 96  YDID--MIKCIYCGLCQEACPV--------DAIVEGPNFEFATETRQE 133
           + I      C  C LC EACP          AI   P      + R+ 
Sbjct: 744 FTIQVAPEDCTGCALCVEACPAKDKTQAGRKAINMAPQPPIREQEREN 791


>gi|296333186|ref|ZP_06875639.1| putative oxido-reductase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305675308|ref|YP_003866980.1| putative oxido-reductase [Bacillus subtilis subsp. spizizenii str.
           W23]
 gi|296149384|gb|EFG90280.1| putative oxido-reductase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305413552|gb|ADM38671.1| putative oxido-reductase [Bacillus subtilis subsp. spizizenii str.
           W23]
          Length = 979

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 4/91 (4%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+           + +   Y     +CIAC  C  +C    +             R
Sbjct: 123 HQKYPYTPKEDPSCAV-DMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWERERPR 181

Query: 93  TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120
            +  +   I+   C+ CG C   CP +A++E
Sbjct: 182 VIWDEGVPINESSCVSCGQCVTVCPCNALME 212


>gi|1934609|gb|AAB80862.1| formate dehydrogenase chain A [Bacillus subtilis subsp. subtilis
           str. 168]
          Length = 982

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 4/91 (4%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+           + +   Y     +CIAC  C  +C    +             R
Sbjct: 126 HQKYPYTPKEDPSCAV-DMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWERERPR 184

Query: 93  TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120
            +  +   I+   C+ CG C   CP +A++E
Sbjct: 185 VIWDEGVPINESSCVSCGQCVTVCPCNALME 215


>gi|295110160|emb|CBL24113.1| Iron only hydrogenase large subunit, C-terminal domain
           [Ruminococcus obeum A2-162]
          Length = 501

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 7/83 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRC------HDGTRRTVRYDIDMIKCIYCGLCQ 110
              +++CI C  C+A CP  AI+    P          G+    R  I   KC+ CG+C 
Sbjct: 146 YIDQDKCIKCGKCKASCPYDAISHNVRPCEQACGVKAIGSDEQGRASILEDKCVSCGMCM 205

Query: 111 EACPVDAI-VEGPNFEFATETRQ 132
            +CP  AI  +   F+ A   R 
Sbjct: 206 VSCPFGAISDKSQIFQLAHALRD 228



 Score = 40.9 bits (94), Expect = 0.059,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 13/62 (20%)

Query: 61  ERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             C  C    C   CP  AI+++ G              ID  KCI CG C+ +CP DAI
Sbjct: 119 NMCRGCVAHPCMQACPKGAISMKDGKSY-----------IDQDKCIKCGKCKASCPYDAI 167

Query: 119 VE 120
             
Sbjct: 168 SH 169


>gi|282163784|ref|YP_003356169.1| hypothetical protein MCP_1114 [Methanocella paludicola SANAE]
 gi|282156098|dbj|BAI61186.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 381

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 33/97 (34%), Gaps = 11/97 (11%)

Query: 28  FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH 87
           FK   T++            R      R      RC+ C +C   CP +A+    G    
Sbjct: 289 FKKPPTMSMERIPPVLLNAAR-RLVSNRPRIDVSRCVKCGICARDCPPKAMKFTKGAAPV 347

Query: 88  DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
                     ID  KCI C  CQE CP  A+     F
Sbjct: 348 ----------IDQGKCIRCYCCQELCPEGAVYVAKPF 374


>gi|113971070|ref|YP_734863.1| FAD linked oxidase domain-containing protein [Shewanella sp. MR-4]
 gi|113885754|gb|ABI39806.1| FAD linked oxidase domain protein [Shewanella sp. MR-4]
          Length = 934

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 9/93 (9%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           E +     I  +         +     D  + KCI CG C++ CP  A+   P    AT 
Sbjct: 509 EGLLNPGVILNDDSTVHVKNIKPCPVVDDFVDKCIECGFCEKTCPTSALNFSPRQRIATL 568

Query: 130 TRQELYYDKERLLNNGDRWESEIVRNIVTDSPY 162
            R+      ERL  +GD+        +  D+ Y
Sbjct: 569 -RE-----IERLEQSGDK---AAADKMRADAKY 592



 Score = 38.2 bits (87), Expect = 0.37,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 26/76 (34%), Gaps = 18/76 (23%)

Query: 57  PNGEERCIACKLCEAICPAQAITIES-----------------GPRCHDGTRRTVRYDID 99
            +  ++CI C  CE  CP  A+                          D  R   +YD+ 
Sbjct: 536 DDFVDKCIECGFCEKTCPTSALNFSPRQRIATLREIERLEQSGDKAAADKMRADAKYDVI 595

Query: 100 MIKCIYCGLCQEACPV 115
              C  C LC  ACPV
Sbjct: 596 -DTCAACQLCTIACPV 610


>gi|229075467|ref|ZP_04208456.1| formate dehydrogenase [Bacillus cereus Rock4-18]
 gi|228707716|gb|EEL59900.1| formate dehydrogenase [Bacillus cereus Rock4-18]
          Length = 975

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+E          +     Y     +CIAC  C  +C    +             R
Sbjct: 119 HQKYPYE--PKVDGSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWEAERPR 176

Query: 93  TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120
            +     DI+   C+ CG C   CP +A++E
Sbjct: 177 VIWDNGVDINDSSCVSCGQCVTICPCNALME 207



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 87  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDGSEVDMTHPFYRYDPNQ 146

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 147 CIACGQCVEVC 157


>gi|229098016|ref|ZP_04228966.1| formate dehydrogenase [Bacillus cereus Rock3-29]
 gi|228685453|gb|EEL39381.1| formate dehydrogenase [Bacillus cereus Rock3-29]
          Length = 975

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 7/92 (7%)

Query: 33  TINYPFE-KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
              YP+E K   S           Y     +CIAC  C  +C    +             
Sbjct: 119 HQKYPYEPKIDVSEVDMTHP---FYRYDPNQCIACGQCVEVCQNLQVNETISIDWEAERP 175

Query: 92  RTVR---YDIDMIKCIYCGLCQEACPVDAIVE 120
           R +     DI+   C+ CG C   CP +A++E
Sbjct: 176 RVIWDNGVDINDSSCVSCGQCVTICPCNALME 207



 Score = 39.7 bits (91), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 87  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKIDVSEVDMTHPFYRYDPNQ 146

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 147 CIACGQCVEVC 157


>gi|229117035|ref|ZP_04246417.1| formate dehydrogenase [Bacillus cereus Rock1-3]
 gi|228666439|gb|EEL21899.1| formate dehydrogenase [Bacillus cereus Rock1-3]
          Length = 979

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 7/92 (7%)

Query: 33  TINYPFE-KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
              YP+E K   S           Y     +CIAC  C  +C    +             
Sbjct: 123 HQKYPYEPKIDVSEVDMTHP---FYRYDPNQCIACGQCVEVCQNLQVNETISIDWEAERP 179

Query: 92  RTVR---YDIDMIKCIYCGLCQEACPVDAIVE 120
           R +     DI+   C+ CG C   CP +A++E
Sbjct: 180 RVIWDNGVDINDSSCVSCGQCVTICPCNALME 211



 Score = 39.7 bits (91), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 91  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKIDVSEVDMTHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|114048300|ref|YP_738850.1| FAD linked oxidase domain-containing protein [Shewanella sp. MR-7]
 gi|113889742|gb|ABI43793.1| FAD linked oxidase domain protein [Shewanella sp. MR-7]
          Length = 934

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 9/93 (9%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           E +     I  +         +     D  + KCI CG C++ CP  A+   P    AT 
Sbjct: 509 EGLLNPGVILNDDSTVHVKNIKPCPVVDDFVDKCIECGFCEKTCPTSALNFSPRQRIATL 568

Query: 130 TRQELYYDKERLLNNGDRWESEIVRNIVTDSPY 162
            R+      ERL  +GD+        +  D+ Y
Sbjct: 569 -RE-----IERLEQSGDK---AAADKMRADAKY 592



 Score = 38.2 bits (87), Expect = 0.38,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 26/76 (34%), Gaps = 18/76 (23%)

Query: 57  PNGEERCIACKLCEAICPAQAITIES-----------------GPRCHDGTRRTVRYDID 99
            +  ++CI C  CE  CP  A+                          D  R   +YD+ 
Sbjct: 536 DDFVDKCIECGFCEKTCPTSALNFSPRQRIATLREIERLEQSGDKAAADKMRADAKYDVI 595

Query: 100 MIKCIYCGLCQEACPV 115
              C  C LC  ACPV
Sbjct: 596 -DTCAACQLCTIACPV 610


>gi|14250944|emb|CAC39239.1| FdhA-II protein [Eubacterium acidaminophilum]
          Length = 897

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 55  RYPNGEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQE 111
            Y + + +CI+C  C  +C   Q             T     +D+D+ K  C+ CG C  
Sbjct: 138 FYISDQNKCISCGRCVRVCNELQCTGAIDLAERGFDTHVATPFDVDLEKSKCVSCGNCVA 197

Query: 112 ACPVDAIV 119
            CPV A++
Sbjct: 198 VCPVGALM 205



 Score = 33.5 bits (75), Expect = 8.6,   Method: Composition-based stats.
 Identities = 12/56 (21%), Positives = 17/56 (30%), Gaps = 5/56 (8%)

Query: 63  CIACKLC-----EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           C+    C           +    E   + ++       Y  D  KCI CG C   C
Sbjct: 101 CVKSGDCRLQDYCYEYGVKEPEFEGAKKNYEIDDSNPFYISDQNKCISCGRCVRVC 156


>gi|326391859|ref|ZP_08213372.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325992099|gb|EGD50578.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 1175

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 52/143 (36%), Gaps = 31/143 (21%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTRRTV 94
            G+ +   RG           + CI C  C  +CP  AI     T E      +G +   
Sbjct: 667 PGTAAYEKRGIAVDVPEWQ-IDNCIQCNQCAFVCPHAAIRPFLLTEEEVKNAPEGFKVKK 725

Query: 95  -----------RYDIDMIKCIYCGLCQEACP--VDAIVEGP---------NFEFATE-TR 131
                      R  + ++ C  CG+C   CP    A+V  P         N+E+A   + 
Sbjct: 726 AIGKGFEGLYYRIQVSVLDCTGCGVCVNECPAKEKALVMKPLETQMEEAKNWEYAMTLSP 785

Query: 132 QELYYDKERLLNNGDRWESEIVR 154
           +E   +KE     G ++E  ++ 
Sbjct: 786 KENPMNKE--TVKGSQFEKPLLE 806


>gi|331091265|ref|ZP_08340106.1| hypothetical protein HMPREF9477_00749 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330404712|gb|EGG84251.1| hypothetical protein HMPREF9477_00749 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 502

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 7/85 (8%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGL 108
                + +CI C  C+A CP  AI  +  P             +  R  ID  KC+ CG+
Sbjct: 145 HSFIDQTKCIKCGKCKANCPYDAIAKKERPCQKSCGVNAIVSDKYGRAKIDNDKCVSCGM 204

Query: 109 CQEACPVDAI-VEGPNFEFATETRQ 132
           C  +CP  AI  +   F+ A   R+
Sbjct: 205 CMVSCPFGAISDKSQIFQLARALRE 229



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 13/64 (20%)

Query: 57  PNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 C  C    C+ +CP  AI+++ G              ID  KCI CG C+  CP
Sbjct: 116 YEVSNMCKGCVAHPCKEVCPVGAISMKDG-----------HSFIDQTKCIKCGKCKANCP 164

Query: 115 VDAI 118
            DAI
Sbjct: 165 YDAI 168


>gi|238756490|ref|ZP_04617795.1| Electron transport complex protein rnfC [Yersinia ruckeri ATCC
           29473]
 gi|238705277|gb|EEP97689.1| Electron transport complex protein rnfC [Yersinia ruckeri ATCC
           29473]
          Length = 552

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 35/101 (34%), Gaps = 3/101 (2%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C LC   CPA  +  +       G       +  +  CI CG C   CP   I    
Sbjct: 353 CIRCGLCVDACPAG-LLPQQLYWFSRGEEHEKARNHHLFDCIECGACAYVCPSH-IPLVQ 410

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            +       + L  +  R      R+E++  R +  +   R
Sbjct: 411 YYRQEKAEIKALDLETARATEAKARFEAKQAR-LEREKSAR 450



 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/16 (56%), Positives = 10/16 (62%)

Query: 99  DMIKCIYCGLCQEACP 114
               CI CGLC +ACP
Sbjct: 349 QEEACIRCGLCVDACP 364


>gi|254505773|ref|ZP_05117919.1| putative formate dehydrogenase alpha subunit [Vibrio
           parahaemolyticus 16]
 gi|219551426|gb|EED28405.1| putative formate dehydrogenase alpha subunit [Vibrio
           parahaemolyticus 16]
          Length = 1402

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 14/79 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIE--------------SGPRCHDGTRRTVRYDIDMIKCI 104
              RCI+C  C   C  QA+                    R H G+ +  R  +    C+
Sbjct: 631 DANRCISCGQCIQACSEQAVHGILNFVHDQHGRPALRPDDRPHFGSSKNGRLLMGDSNCV 690

Query: 105 YCGLCQEACPVDAIVEGPN 123
            CG C +ACP  A+V+  +
Sbjct: 691 QCGACVQACPTGAMVDSRD 709



 Score = 34.7 bits (78), Expect = 4.6,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 21/72 (29%), Gaps = 9/72 (12%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P ++        G   +     G+  C+ C  C   CP  A+                  
Sbjct: 668 PDDRPHFGSSKNGRLLM-----GDSNCVQCGACVQACPTGAMVDSRDRAQGREEVLKKVD 722

Query: 97  DIDMIKCIYCGL 108
            I    C YCG+
Sbjct: 723 TI----CTYCGV 730


>gi|113972044|ref|YP_735837.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. MR-4]
 gi|113886728|gb|ABI40780.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. MR-4]
          Length = 553

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 30/82 (36%), Gaps = 9/82 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E+C  C  C AICP  A+                        C+ CGLC+ ACP   I
Sbjct: 419 NVEKCTLCMSCVAICPTMALQDGGDKPALH---------FIEQNCVQCGLCEAACPEKVI 469

Query: 119 VEGPNFEFATETRQELYYDKER 140
              P   F    RQ+L   KE 
Sbjct: 470 SLTPQINFDKAARQQLQTLKEE 491



 Score = 37.0 bits (84), Expect = 0.86,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 11/53 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C   CPA AI+  +              ++D   C   G C  ACP  AI
Sbjct: 195 CNRCLNFCPADAISSVAKK-----------IEVDPYLCHGAGSCSSACPTGAI 236


>gi|114049274|ref|YP_739824.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. MR-7]
 gi|113890716|gb|ABI44767.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. MR-7]
          Length = 553

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 30/82 (36%), Gaps = 9/82 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E+C  C  C AICP  A+                        C+ CGLC+ ACP   I
Sbjct: 419 NVEKCTLCMSCVAICPTMALQDGGDKPALH---------FIEQNCVQCGLCEAACPEKVI 469

Query: 119 VEGPNFEFATETRQELYYDKER 140
              P   F    RQ+L   KE 
Sbjct: 470 SLTPQINFDKAARQQLQTLKEE 491



 Score = 37.0 bits (84), Expect = 0.86,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 11/53 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C   CPA AI+  +              ++D   C   G C  ACP  AI
Sbjct: 195 CNRCLNFCPADAISSVAKK-----------IEVDPYLCHGAGSCSSACPTGAI 236


>gi|328952636|ref|YP_004369970.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfobacca
           acetoxidans DSM 11109]
 gi|328452960|gb|AEB08789.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfobacca
           acetoxidans DSM 11109]
          Length = 780

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           C  C  C A+CP Q I   +             Y ID  +C  CG C E CP +AI  
Sbjct: 246 CNLCGQCAAVCPVQ-INDHAAIYLPSPHAFPTGYVIDSEQCTRCGACLEVCPQEAITL 302



 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 10/72 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP---V 115
             E+C  CK C   CP QAI +              +  + +  C  CG+C  ACP   V
Sbjct: 567 DPEKCTGCKRCFQQCPFQAIELYDREGE-------TKARVIVAACKGCGVCAGACPAEAV 619

Query: 116 DAIVEGPNFEFA 127
            A         A
Sbjct: 620 TAYGFTDEMILA 631



 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 13/29 (44%)

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           +  +ID  KC  C  C + CP  AI    
Sbjct: 562 IVCEIDPEKCTGCKRCFQQCPFQAIELYD 590


>gi|227485074|ref|ZP_03915390.1| pyruvate synthase [Anaerococcus lactolyticus ATCC 51172]
 gi|227236907|gb|EEI86922.1| pyruvate synthase [Anaerococcus lactolyticus ATCC 51172]
          Length = 1175

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 39/114 (34%), Gaps = 20/114 (17%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESG 83
           FE G+T+   RG  AL       + CI C  C  +CP                A      
Sbjct: 665 FESGTTAYEKRG-IALNVPEWQIDNCIQCNQCSYVCPHAVIRPFLVTEEEKANAPEGFET 723

Query: 84  PRCHDGTRRTVRYDID--MIKCIYCGLCQEAC--PVDAIVEGPNFEFATETRQE 133
            +          + I    + C  CG C + C  P  A++  P FE   E  ++
Sbjct: 724 KKAIGKGMDGFTFRIQVSPLDCTGCGNCADVCPAPKKALLMKP-FEEEVEKEKD 776


>gi|222100042|ref|YP_002534610.1| Fe-hydrogenase beta subunit [Thermotoga neapolitana DSM 4359]
 gi|221572432|gb|ACM23244.1| Fe-hydrogenase beta subunit [Thermotoga neapolitana DSM 4359]
          Length = 626

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 30/69 (43%), Gaps = 10/69 (14%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           A ++Y    E C  C LC   CP  AIT E G            Y ID  KC+ CG+C  
Sbjct: 567 AFKKYVINPEICKGCGLCARSCPQNAITGERGKP----------YRIDQEKCVKCGVCAS 616

Query: 112 ACPVDAIVE 120
            CP  AI  
Sbjct: 617 KCPFKAIEL 625



 Score = 41.2 bits (95), Expect = 0.042,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 16/39 (41%)

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              G           +Y I+   C  CGLC  +CP +AI
Sbjct: 555 HIEGECPSGMCTAFKKYVINPEICKGCGLCARSCPQNAI 593


>gi|300690753|ref|YP_003751748.1| 4Fe-4S ferredoxin [Ralstonia solanacearum PSI07]
 gi|299077813|emb|CBJ50451.1| putative 4Fe-4S ferredoxin [Ralstonia solanacearum PSI07]
          Length = 708

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 9/74 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ERC  C  C + CP+QA+  ++               +    C+ CGLC+  CP DAI
Sbjct: 576 DRERCTLCMACVSACPSQALRDQAE---------RPVLSMIERNCVQCGLCETTCPEDAI 626

Query: 119 VEGPNFEFATETRQ 132
              P    + + RQ
Sbjct: 627 ALVPRLNLSADARQ 640



 Score = 41.2 bits (95), Expect = 0.042,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 7/55 (12%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C  C  +C A AIT +                +    C+ CG C  ACP  A+
Sbjct: 323 VGCDACVRVCSAAAITSQWKDGRGSVH-------VTPNLCVGCGACTTACPTGAL 370



 Score = 38.2 bits (87), Expect = 0.41,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 20/48 (41%)

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               A  +   SG       +   R  ID+ +C +C  C + CP DAI
Sbjct: 168 WPIQAGELVQVSGWLGAFEVQWRSRNPIDLDRCTHCNACIDVCPEDAI 215



 Score = 34.7 bits (78), Expect = 4.1,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 24/89 (26%), Gaps = 19/89 (21%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYP-----NGEERCIACKLCEAICPAQAITIESGP 84
                 +P + G          A             +RC  C  C  +CP  AI      
Sbjct: 162 PPMERRWPIQAGELVQVSGWLGAFEVQWRSRNPIDLDRCTHCNACIDVCPEDAID----- 216

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                      Y ID+  C     C +AC
Sbjct: 217 ---------TLYQIDLDACRDHRDCVKAC 236



 Score = 34.7 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 1/66 (1%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR-YDIDMI 101
            S   R +         E  C+ C LCE  CP  AI +          R+ V   +    
Sbjct: 591 PSQALRDQAERPVLSMIERNCVQCGLCETTCPEDAIALVPRLNLSADARQPVTLNETQPF 650

Query: 102 KCIYCG 107
            CI CG
Sbjct: 651 HCIRCG 656


>gi|291286072|ref|YP_003502888.1| Electron transfer flavoprotein alpha subunit [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290883232|gb|ADD66932.1| Electron transfer flavoprotein alpha subunit [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 440

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 16/74 (21%)

Query: 48  RGEHALRRYPNGEERCIACK-LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
           RG   L+        CIAC   CE+ CP  A+T++                I+  KCI C
Sbjct: 8   RGVARLKPD-----TCIACGARCESACPVDAVTMDDNESP----------IINEEKCIGC 52

Query: 107 GLCQEACPVDAIVE 120
             C + CP DAI  
Sbjct: 53  VKCVKVCPADAIFM 66



 Score = 34.3 bits (77), Expect = 6.1,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)

Query: 100 MIKCIYCGL-CQEACPVDAIVEGPN 123
              CI CG  C+ ACPVDA+    N
Sbjct: 15  PDTCIACGARCESACPVDAVTMDDN 39


>gi|148976171|ref|ZP_01812914.1| iron-sulfur cluster-binding protein [Vibrionales bacterium SWAT-3]
 gi|145964566|gb|EDK29820.1| iron-sulfur cluster-binding protein [Vibrionales bacterium SWAT-3]
          Length = 555

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 36/102 (35%), Gaps = 9/102 (8%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
              + C  C  C A+CP +A+  +           +         CI CGLC++ACP + 
Sbjct: 417 CESKDCTLCMSCVAVCPTRALHTDGA---------SPSLKFVEQDCIQCGLCEKACPENV 467

Query: 118 IVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
           +   P   +  E RQ+     E       R         + D
Sbjct: 468 LTLTPRMNWVKEERQKAVVIHEEKAAECVRCHKPFAPQSMID 509



 Score = 37.4 bits (85), Expect = 0.73,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 6/53 (11%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C+ C   CPA A++ E   +         + +I+   C   G C  +CP +AI
Sbjct: 188 CERCVDACPAGALSSEGSDKTGH------KIEINPYLCQGVGTCATSCPTEAI 234


>gi|15678946|ref|NP_276063.1| tungsten formylmethanofuran dehydrogenase, subunit F-like protein
           [Methanothermobacter thermautotrophicus str. Delta H]
 gi|2622023|gb|AAB85424.1| tungsten formylmethanofuran dehydrogenase, subunit F homolog
           [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 332

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 31/74 (41%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R            E+CI C  C A+CPA AI I                 +D  KC+YCG
Sbjct: 129 RKSLVKGEINVSMEKCIYCGECAAMCPASAIEISWRDPDSSNMAIADGIRVDEDKCLYCG 188

Query: 108 LCQEACPVDAIVEG 121
           +C+  CPV AI   
Sbjct: 189 ICKRICPVGAIRMS 202



 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 4/83 (4%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-- 97
           +    P  RG   + R    +E+C+ C LC ++C   AI ++   +   G      +D  
Sbjct: 38  RAPLLPIARGLIKMNRVSFNKEKCVLCGLCASVCIFGAIDLQKDGKSIRGADEYPFWDFK 97

Query: 98  --IDMIKCIYCGLCQEACPVDAI 118
             ID  KC  CG C +ACP +A+
Sbjct: 98  LEIDDEKCFLCGNCADACPRNAL 120



 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 26/76 (34%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R     R      + C  C LC   CP  AI          G  +  R   +  KC+ CG
Sbjct: 6   RMGSERRTLNYNPDLCTGCGLCSETCPVNAIDRAPLLPIARGLIKMNRVSFNKEKCVLCG 65

Query: 108 LCQEACPVDAIVEGPN 123
           LC   C   AI    +
Sbjct: 66  LCASVCIFGAIDLQKD 81



 Score = 41.2 bits (95), Expect = 0.051,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---YDIDMIKCIYCGLCQEACPV 115
            E++C+ C +C+ ICP  AI +      ++   +            +C +CG C E CP 
Sbjct: 180 DEDKCLYCGICKRICPVGAIRMSCLTCMYNEELKATVEGAVITIDERCAHCGWCMEICPA 239

Query: 116 DAI 118
           +AI
Sbjct: 240 NAI 242



 Score = 34.3 bits (77), Expect = 5.5,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 10/64 (15%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY--CGLCQEACPVDAI 118
           ERC  C  C  ICPA AIT++   R                +C    C  C + CP +AI
Sbjct: 225 ERCAHCGWCMEICPANAITVKKPIRGTISQA--------DERCRGESCHACVDVCPCNAI 276

Query: 119 VEGP 122
               
Sbjct: 277 SIIN 280


>gi|330811333|ref|YP_004355795.1| Electron transport complex protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gi|327379441|gb|AEA70791.1| Electron transport complex protein [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
          Length = 341

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 28/78 (35%), Gaps = 10/78 (12%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
              RG    +     E  CI C  C   CP  AI   +           + + I + +C 
Sbjct: 63  DTSRGVAPAQVAFIREAECIGCTKCIQACPVDAIVGAAK----------LMHTILIDECT 112

Query: 105 YCGLCQEACPVDAIVEGP 122
            C LC   CPVD I   P
Sbjct: 113 GCDLCVAPCPVDCIEMHP 130


>gi|258515754|ref|YP_003191976.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257779459|gb|ACV63353.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 369

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 10/68 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +++CI C  C  +CP +A T+    +            I    CI CG C   CP  AI
Sbjct: 191 NQDKCIGCAQCSTVCPEKASTLNDNNKAE----------ISPDSCIGCGECLTTCPEKAI 240

Query: 119 VEGPNFEF 126
                 E 
Sbjct: 241 EMDWETEI 248



 Score = 37.0 bits (84), Expect = 0.96,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 19/62 (30%), Gaps = 3/62 (4%)

Query: 65  ACKLCEAICPAQAIT---IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
             K  E      AI    +   P      +   +  ++  KCI C  C   CP  A    
Sbjct: 154 HFKGHEMAGFGGAIKNLAMGGAPAAGKKEQHASKMIVNQDKCIGCAQCSTVCPEKASTLN 213

Query: 122 PN 123
            N
Sbjct: 214 DN 215


>gi|320100539|ref|YP_004176131.1| pyruvate ferredoxin oxidoreductase subunit delta [Desulfurococcus
           mucosus DSM 2162]
 gi|319752891|gb|ADV64649.1| pyruvate ferredoxin oxidoreductase, delta subunit [Desulfurococcus
           mucosus DSM 2162]
          Length = 93

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 11/67 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              +C  C +C   CP  AI  +                +++  C  CG+C   CPV AI
Sbjct: 36  DHGKCTKCMICWLFCPDMAIVWDGEK-----------IQVNLDYCKGCGICAHECPVKAI 84

Query: 119 VEGPNFE 125
              P FE
Sbjct: 85  SMVPEFE 91


>gi|167039777|ref|YP_001662762.1| cobyrinic acid a,c-diamide synthase [Thermoanaerobacter sp. X514]
 gi|300914979|ref|ZP_07132294.1| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter sp. X561]
 gi|307724899|ref|YP_003904650.1| cobyrinic acid a,c-diamide synthase [Thermoanaerobacter sp. X513]
 gi|166854017|gb|ABY92426.1| Cobyrinic acid a,c-diamide synthase [Thermoanaerobacter sp. X514]
 gi|300888703|gb|EFK83850.1| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter sp. X561]
 gi|307581960|gb|ADN55359.1| cobyrinic acid a,c-diamide synthase [Thermoanaerobacter sp. X513]
          Length = 291

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 42/110 (38%), Gaps = 22/110 (20%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE-------ERCIACKLCEAIC 73
              L    K K   +   E  + +   +GE   ++   G+       ++CI C LCE +C
Sbjct: 19  ATTLSTIVKNKIMADCDVEAPNLNIVLQGEIIEKQDFYGKETAVIDKDKCIECGLCERLC 78

Query: 74  PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
              AI+                ++++   C  CGLC   CPV+AI     
Sbjct: 79  RFDAISN---------------FEVNPYYCEGCGLCMYKCPVEAIKLVEE 113


>gi|71281638|ref|YP_268922.1| electron transport complex protein RnfC [Colwellia psychrerythraea
           34H]
 gi|71147378|gb|AAZ27851.1| electron transport complex, RnfABCDGE type, C subunit [Colwellia
           psychrerythraea 34H]
          Length = 788

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 13/112 (11%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            + E  CI C  C  +CP+Q +  +           +    +++  CI CG C   CP  
Sbjct: 378 ESNEVECIRCGQCSDVCPSQ-LLPQELQWSAKAKDYSQLEKLNLRDCIDCGACAYVCPSQ 436

Query: 117 AIVEGPNFEFAT-ETRQ----ELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            I     +  A  E R+    +L  +K ++     R+E+  +R +  +   R
Sbjct: 437 -IPLVHYYRIAKAEIREQQQLDLKAEKAKI-----RFEARKLR-LEKEKVAR 481


>gi|83309275|ref|YP_419539.1| ferredoxin-NADP reductase [Magnetospirillum magneticum AMB-1]
 gi|82944116|dbj|BAE48980.1| Ferredoxin-NADP reductase [Magnetospirillum magneticum AMB-1]
          Length = 393

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 11/65 (16%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           R++      CI C  CE  CP  AIT +              Y +   KC  C  C   C
Sbjct: 5   RQHLIDPVVCIRCNTCEEACPVDAITHDG-----------TNYVVSYDKCTGCRTCVSPC 53

Query: 114 PVDAI 118
           P  AI
Sbjct: 54  PTGAI 58



 Score = 38.2 bits (87), Expect = 0.39,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 98  IDMIKCIYCGLCQEACPVDAI-VEGPNFEFATET 130
           ID + CI C  C+EACPVDAI  +G N+  + + 
Sbjct: 9   IDPVVCIRCNTCEEACPVDAITHDGTNYVVSYDK 42


>gi|257789834|ref|YP_003180440.1| thiamine pyrophosphate protein domain-containing protein
           TPP-binding [Eggerthella lenta DSM 2243]
 gi|257473731|gb|ACV54051.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Eggerthella lenta DSM 2243]
          Length = 735

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 2/76 (2%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E C  CK C        I  ++  R     +R   + +D   C  CGLC + CP DA+
Sbjct: 651 DAETCTGCKKCITEIGCPGIGFDADARGPRSKQRGQAF-VDPSLCNGCGLCVQVCPFDAL 709

Query: 119 VEG-PNFEFATETRQE 133
               P  + + ET  +
Sbjct: 710 SMTEPQTDVSRETSSD 725


>gi|229104102|ref|ZP_04234776.1| formate dehydrogenase [Bacillus cereus Rock3-28]
 gi|228679309|gb|EEL33512.1| formate dehydrogenase [Bacillus cereus Rock3-28]
          Length = 975

 Score = 52.4 bits (124), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 7/92 (7%)

Query: 33  TINYPFE-KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
              YP+E K   S           Y     +CIAC  C  +C    +             
Sbjct: 119 HQKYPYEPKVDVSEVDMTHP---FYRYDPNQCIACGQCVEVCQNLQVNETISIDWEAERP 175

Query: 92  RTVR---YDIDMIKCIYCGLCQEACPVDAIVE 120
           R +     DI+   C+ CG C   CP +A++E
Sbjct: 176 RVIWDNGVDINDSSCVSCGQCVTICPCNALME 207



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 87  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 146

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 147 CIACGQCVEVC 157


>gi|320103709|ref|YP_004179300.1| NAD-dependent formate dehydrogenase catalytic subunit [Isosphaera
           pallida ATCC 43644]
 gi|319750991|gb|ADV62751.1| NAD-dependent formate dehydrogenase iron-sulfur protein [Isosphaera
           pallida ATCC 43644]
          Length = 986

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 7/91 (7%)

Query: 32  TTINYP-FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDG 89
           TT  +P  ++ +  P  R   A+       + CI C LC   C   Q   +         
Sbjct: 187 TTSRFPARDETAIPPPDRSHPAM---AVHLDSCIQCGLCVRACREVQVNDVIGLAHRGYQ 243

Query: 90  TRRTVRYD--IDMIKCIYCGLCQEACPVDAI 118
           TR    +D  +    C+ CG C +ACP  A+
Sbjct: 244 TRVVFDFDDPMGQSSCVGCGECVQACPTGAL 274


>gi|255525491|ref|ZP_05392428.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
           carboxidivorans P7]
 gi|296188576|ref|ZP_06856964.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
 gi|255510856|gb|EET87159.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium
           carboxidivorans P7]
 gi|296046840|gb|EFG86286.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
          Length = 242

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 7/70 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + C  C  C   C   A++I+          +    DID  KCIYC  C +ACP   +
Sbjct: 32  CNDNCTGCGKCVQECLVDAVSIKKD-------TKHKSIDIDFKKCIYCNNCVDACPSKVL 84

Query: 119 VEGPNFEFAT 128
               +++ A+
Sbjct: 85  KSSNDYKMAS 94


>gi|148262877|ref|YP_001229583.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Geobacter uraniireducens Rf4]
 gi|146396377|gb|ABQ25010.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Geobacter
           uraniireducens Rf4]
          Length = 143

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 41/118 (34%), Gaps = 15/118 (12%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
                    +       T+ YP  +   +   RG        N  +RCI C +C   CP 
Sbjct: 3   IFTMTKTVTKNLVTGPATLMYPQRERIFTAITRGRIE-----NAIDRCIFCGMCGRRCPT 57

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
            AI +    +          + ID +KC  C LC E CPV  +    N       R++
Sbjct: 58  YAIVVTKESKA---------WQIDRLKCCTCNLCVEVCPVKCLS-TDNHGKKEIDREQ 105


>gi|315442745|ref|YP_004075624.1| NADPH-dependent glutamate synthase beta chain-like oxidoreductase
           [Mycobacterium sp. Spyr1]
 gi|315261048|gb|ADT97789.1| NADPH-dependent glutamate synthase beta chain-like oxidoreductase
           [Mycobacterium sp. Spyr1]
          Length = 557

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 3/64 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + C +   C   CP   I          G        ID + C+ CG C  ACP
Sbjct: 1   MPHVITQSCCSDGSCVYACPVNCIHPSPDE---PGFATAEMLYIDPVACVDCGACVSACP 57

Query: 115 VDAI 118
           V AI
Sbjct: 58  VGAI 61



 Score = 34.7 bits (78), Expect = 4.1,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
              +    C   G C  ACPV+ I   P+ E    T + LY D 
Sbjct: 1   MPHVITQSCCSDGSCVYACPVNCIHPSPD-EPGFATAEMLYIDP 43


>gi|291534172|emb|CBL07285.1| glutamate synthase (NADPH) GltB3 subunit [Megamonas hypermegale
           ART12/1]
          Length = 778

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 23/73 (31%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L    +   RCI+C  C           E           +  Y  D  KCI CG+C   
Sbjct: 696 LGEPADDVNRCISCGTCRDCETCMQSCPEKAITRIQHLDGSFEYVSDANKCIGCGICAGV 755

Query: 113 CPVDAIVEGPNFE 125
           CP        N E
Sbjct: 756 CPCGIWTLKNNPE 768


>gi|254168046|ref|ZP_04874894.1| 2-oxoacid:acceptor oxidoreductase, delta subunit,
           pyruvate/2-ketoisovalerate family [Aciduliprofundum
           boonei T469]
 gi|289595976|ref|YP_003482672.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Aciduliprofundum boonei T469]
 gi|197623089|gb|EDY35656.1| 2-oxoacid:acceptor oxidoreductase, delta subunit,
           pyruvate/2-ketoisovalerate family [Aciduliprofundum
           boonei T469]
 gi|289533763|gb|ADD08110.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Aciduliprofundum boonei T469]
          Length = 108

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 3/90 (3%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGT 90
              P  K  ++    G     R     ++CI C +C   CP  AI     E+     +  
Sbjct: 8   EPTPIAKVPSTENKTGGWRTFRPIIHYDKCIRCYICWKFCPDAAIHFASPEAHEAPKEAL 67

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            +    +I+   C  CG+C   CP  AI  
Sbjct: 68  AKFDTVEINYDFCKGCGICANECPTKAIEL 97


>gi|94676995|ref|YP_588861.1| pyruvate-flavodoxin oxidoreductase [Baumannia cicadellinicola str.
           Hc (Homalodisca coagulata)]
 gi|94220145|gb|ABF14304.1| Pyruvate-flavodoxin oxidoreductase [Baumannia cicadellinicola str.
           Hc (Homalodisca coagulata)]
          Length = 1163

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/117 (17%), Positives = 27/117 (23%), Gaps = 24/117 (20%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A        E C  C  C A C
Sbjct: 646 ILAGLGDTL------PVSAFPPDGTWPIGTARWEKRNIAETIPIWTAELCTQCNYCVAAC 699

Query: 74  PA--------------QAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACP 114
           P                A T               +Y   +    C  CGLC + CP
Sbjct: 700 PHAAIRAKVVAPTALDGAPTSLKFIDAKMRHMYGQKYLLQVAPEDCTGCGLCVKVCP 756


>gi|145222311|ref|YP_001132989.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Mycobacterium gilvum PYR-GCK]
 gi|145214797|gb|ABP44201.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Mycobacterium gilvum PYR-GCK]
          Length = 557

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 3/64 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + C +   C   CP   I          G        ID + C+ CG C  ACP
Sbjct: 1   MPHVITQSCCSDGSCVYACPVNCIHPSPDE---PGFATAEMLYIDPVACVDCGACVSACP 57

Query: 115 VDAI 118
           V AI
Sbjct: 58  VGAI 61



 Score = 34.7 bits (78), Expect = 4.1,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
              +    C   G C  ACPV+ I   P+ E    T + LY D 
Sbjct: 1   MPHVITQSCCSDGSCVYACPVNCIHPSPD-EPGFATAEMLYIDP 43


>gi|328943786|ref|ZP_08241251.1| pyruvate-ferredoxin oxidoreductase [Atopobium vaginae DSM 15829]
 gi|327491755|gb|EGF23529.1| pyruvate-ferredoxin oxidoreductase [Atopobium vaginae DSM 15829]
          Length = 1172

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 44/129 (34%), Gaps = 28/129 (21%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
           +E G+ +   RG   +  + +   +CI C  C  +CP   I   +               
Sbjct: 666 YELGTAAYEKRGVAVMVPHWDE-TKCIQCNNCSFVCPHSTIRPIAMTEAEAAAAPAQMRM 724

Query: 98  ID----------------MIKCIYCGLCQEACPVDAIVEGP---------NFEFATETRQ 132
           ID                 + C+ C  C   CP D +   P          +++A +  +
Sbjct: 725 IDAKGKGADGLKFAIAVSPLDCMGCTNCVYVCPKDCLTMVPTEQELDQQEVWDYAVD--E 782

Query: 133 ELYYDKERL 141
           +   +KE+L
Sbjct: 783 DNVSEKEQL 791


>gi|70607938|ref|YP_256808.1| indolepyruvate ferredoxin oxidoreductase alpha [Sulfolobus
           acidocaldarius DSM 639]
 gi|68568586|gb|AAY81515.1| indolepyruvate ferredoxin oxidoreductase alpha [Sulfolobus
           acidocaldarius DSM 639]
          Length = 611

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 23/68 (33%), Gaps = 10/68 (14%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
           + L +      +C  C +C       AI      +            ID+  CI CG C 
Sbjct: 538 NKLPKAVVDMAKCTGCTICYDYFTCPAIIPRKDKKAE----------IDVYNCIGCGACV 587

Query: 111 EACPVDAI 118
             CP  AI
Sbjct: 588 PVCPFKAI 595


>gi|256545265|ref|ZP_05472630.1| pyruvate-ferredoxin oxidoreductase [Anaerococcus vaginalis ATCC
           51170]
 gi|256399092|gb|EEU12704.1| pyruvate-ferredoxin oxidoreductase [Anaerococcus vaginalis ATCC
           51170]
          Length = 1176

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/114 (26%), Positives = 41/114 (35%), Gaps = 20/114 (17%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTR- 91
           FE G+T    RG  AL       + CI C  C  +CP   I     T E      +G   
Sbjct: 664 FEPGTTQYEKRG-IALNVPEWQIDNCIQCNQCSYVCPHAVIRPFLLTEEEKANAPEGFET 722

Query: 92  ----------RTVRYDIDMIKCIYCGLCQEAC--PVDAIVEGPNFEFATETRQE 133
                        R  +  + C  CG C + C  P  A++  P FE   E  ++
Sbjct: 723 KKAIGKGMDGYDFRIQVSPLDCTGCGNCADVCPAPKKALLMKP-FEEEVEKEKD 775


>gi|297543967|ref|YP_003676269.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296841742|gb|ADH60258.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 1175

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 52/143 (36%), Gaps = 31/143 (21%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTRRTV 94
            G+ +   RG           + CI C  C  +CP  AI     T E      +G +   
Sbjct: 667 PGTAAYEKRGIAVDVPEWQ-IDNCIQCNQCAFVCPHAAIRPFLLTEEEAKNAPEGFKVKK 725

Query: 95  -----------RYDIDMIKCIYCGLCQEACP--VDAIVEGP---------NFEFATE-TR 131
                      R  + ++ C  CG+C   CP    A+V  P         N+E+A   + 
Sbjct: 726 AIGKGFEGLYYRIQVSVLDCTGCGVCANECPAKEKALVMKPLETQMEEAKNWEYAMTLSP 785

Query: 132 QELYYDKERLLNNGDRWESEIVR 154
           +E   +KE     G ++E  ++ 
Sbjct: 786 KENPMNKE--TVKGSQFEKPLLE 806


>gi|289577658|ref|YP_003476285.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter
           italicus Ab9]
 gi|289527371|gb|ADD01723.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter
           italicus Ab9]
          Length = 1175

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 52/143 (36%), Gaps = 31/143 (21%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTRRTV 94
            G+ +   RG           + CI C  C  +CP  AI     T E      +G +   
Sbjct: 667 PGTAAYEKRGIAVDVPEWQ-IDNCIQCNQCAFVCPHAAIRPFLLTEEEAKNAPEGFKVKK 725

Query: 95  -----------RYDIDMIKCIYCGLCQEACP--VDAIVEGP---------NFEFATE-TR 131
                      R  + ++ C  CG+C   CP    A+V  P         N+E+A   + 
Sbjct: 726 AIGKGFEGLYYRIQVSVLDCTGCGVCANECPAKEKALVMKPLETQMEEAKNWEYAMTLSP 785

Query: 132 QELYYDKERLLNNGDRWESEIVR 154
           +E   +KE     G ++E  ++ 
Sbjct: 786 KENPMNKE--TVKGSQFEKPLLE 806


>gi|332140733|ref|YP_004426471.1| electron transport complex protein RnfB [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327550755|gb|AEA97473.1| electron transport complex protein RnfB [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 193

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 32/96 (33%), Gaps = 10/96 (10%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E          E   +     E+ CI C  C   CP  AI   +             + +
Sbjct: 94  EPKPLDAAHGEEDVKKVAFIREDECIGCTKCIQACPVDAILGAAK----------HMHTV 143

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134
              +C  C LC + CPVD I   P  +  +  + + 
Sbjct: 144 ITDECTGCDLCVDPCPVDCIDMVPITQTTSTWKWDF 179


>gi|302871534|ref|YP_003840170.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302574393|gb|ADL42184.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 339

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E+CI C LCE  CP             +G  + +   +D   C  C  C + CP  A++E
Sbjct: 252 EKCINCGLCETTCPD--YVFVWDRIVENGKPKMINIGLDYQYCKGCLRCVDICPTGALIE 309

Query: 121 GPNFEFATET---RQEL-YYDK 138
           G   E+  E    + +   Y+K
Sbjct: 310 GIEREYDMEKISAKHDFDIYEK 331



 Score = 35.5 bits (80), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 10/49 (20%)

Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWE 149
            KCI CGLC+  CP    V     E            K +++N G  ++
Sbjct: 252 EKCINCGLCETTCPDYVFVWDRIVEN----------GKPKMINIGLDYQ 290


>gi|253581620|ref|ZP_04858845.1| hydrogenase [Fusobacterium varium ATCC 27725]
 gi|251836690|gb|EES65225.1| hydrogenase [Fusobacterium varium ATCC 27725]
          Length = 644

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 15/76 (19%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E+CI C  C  +CP + I+ +   R          + +D  +C +CG C  ACPV AI E
Sbjct: 221 EKCIGCTACARVCPVKCISGKIKER----------HILDTSRCTHCGQCVAACPVGAIFE 270

Query: 121 GPNF-----EFATETR 131
           G +      + AT  R
Sbjct: 271 GDHTMKLLKDLATPNR 286


>gi|218709479|ref|YP_002417100.1| hypothetical protein VS_1488 [Vibrio splendidus LGP32]
 gi|218322498|emb|CAV18657.1| Conserved hypothetical protein [Vibrio splendidus LGP32]
          Length = 553

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 36/102 (35%), Gaps = 9/102 (8%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
              + C  C  C A+CP +A+  +           +         CI CGLC++ACP + 
Sbjct: 415 CESKDCTLCMSCVAVCPTRALHTDGA---------SPSLKFVEQDCIQCGLCEKACPENV 465

Query: 118 IVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
           +   P   +  E RQ+     E       R         + D
Sbjct: 466 LTLTPRMNWVKEERQKAVVIHEEKAAECLRCHKPFAPQSMID 507



 Score = 38.2 bits (87), Expect = 0.37,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 6/53 (11%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C+ C   CPA A++ E   +         + +I+   C   G C  +CP +AI
Sbjct: 186 CERCVDACPAGALSSEGSEKTGH------KIEINPYLCQGVGTCATSCPTEAI 232


>gi|167947207|ref|ZP_02534281.1| pyruvate ferredoxin/flavodoxin oxidoreductase family protein
           [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 468

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 26/89 (29%), Gaps = 24/89 (26%)

Query: 58  NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY--DIDMI 101
              + CI C  C  +CP                A       R         RY   I + 
Sbjct: 125 WEPDICIQCGNCSFVCPHSVIRSKFYHEKKLADAPDSFPSARISARGFPETRYTLQIYLE 184

Query: 102 KCIYCGLCQEACP--------VDAIVEGP 122
            C  CGLC EACP          AI   P
Sbjct: 185 DCTGCGLCVEACPAYDFEDKTTKAINMKP 213



 Score = 34.7 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 9/26 (34%)

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFE 125
              CI CG C   CP   I      E
Sbjct: 127 PDICIQCGNCSFVCPHSVIRSKFYHE 152


>gi|54027063|ref|YP_121305.1| putative ferredoxin reductase [Nocardia farcinica IFM 10152]
 gi|54018571|dbj|BAD59941.1| putative ferredoxin reductase [Nocardia farcinica IFM 10152]
          Length = 556

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           +RC     C + CP   I              T    ID   CI CG C +ACPV+AI  
Sbjct: 7   QRCCNDASCVSECPVDCIRPTPDQPE---FATTEMLYIDPDTCIDCGACVDACPVEAIFS 63

Query: 121 GPN 123
             +
Sbjct: 64  EDD 66


>gi|227831455|ref|YP_002833235.1| formate dehydrogenase, alpha subunit [Sulfolobus islandicus
           L.S.2.15]
 gi|227457903|gb|ACP36590.1| formate dehydrogenase, alpha subunit [Sulfolobus islandicus
           L.S.2.15]
          Length = 979

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQE 111
            Y     +CI C  C   C   A+             R V  +   I    C+ CG C  
Sbjct: 139 FYVYDPSQCILCGRCVEACQDFAVNEVIWINWDLNPPRVVWDNGNPIGNSSCVNCGTCVT 198

Query: 112 ACPVDAIVE 120
            CPV+A++E
Sbjct: 199 VCPVNALME 207



 Score = 40.1 bits (92), Expect = 0.10,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 7/86 (8%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKL-------CEAICPAQAITIESGPRCHDGTRRTV 94
             S   R     R     +  C  C+         E++      + +   + +       
Sbjct: 79  KRSMEARKTAISRILRYHKLYCSMCENNNGDCVLHESVIKLNINSQKYIEKPYQVDDSGP 138

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVE 120
            Y  D  +CI CG C EAC   A+ E
Sbjct: 139 FYVYDPSQCILCGRCVEACQDFAVNE 164


>gi|90413851|ref|ZP_01221838.1| hypothetical iron-sulfur cluster-binding protein [Photobacterium
           profundum 3TCK]
 gi|90325162|gb|EAS41665.1| hypothetical iron-sulfur cluster-binding protein [Photobacterium
           profundum 3TCK]
          Length = 566

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 9/75 (12%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C  C  C A+CP +A     G              +    CI CGLC++ACP   +  
Sbjct: 432 DDCTLCMSCVAVCPTRAFHAVGGRPG---------LQLIEEDCIQCGLCEKACPEKVLTL 482

Query: 121 GPNFEFATETRQELY 135
            P F +  ETR+   
Sbjct: 483 KPGFNWNAETRKAAV 497



 Score = 34.7 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 11/53 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C   CPA A++                 +I+   C   G C  ACP +AI
Sbjct: 200 CNRCVDACPAGALSSLGHA-----------IEINPYLCQGVGTCATACPTEAI 241


>gi|328887041|emb|CCA60280.1| Ferredoxin or Ferredoxin--NADP(+) reductase,actinobacterial
           (eukaryote) type [Streptomyces venezuelae ATCC 10712]
          Length = 552

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 26/72 (36%), Gaps = 5/72 (6%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C     C A+CP   I              T    ID   CI CG C +ACPVDAI  
Sbjct: 7   QTCCNDATCVAVCPVNCIHPTPEEPD---FGTTEMLYIDPKSCIDCGACADACPVDAIFP 63

Query: 121 GPNFEFATETRQ 132
                     R+
Sbjct: 64  ADR--LTGRLRE 73


>gi|288574747|ref|ZP_06393104.1| NADH dehydrogenase (quinone) [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288570488|gb|EFC92045.1| NADH dehydrogenase (quinone) [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 594

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 10/68 (14%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            AL RY   +++C  C LC   CP   I  +          R  ++ ID   C+ CG C 
Sbjct: 534 QALIRYRIDQDKCKKCGLCAKNCPVNCIDGD----------RKTQFVIDEDACVRCGTCY 583

Query: 111 EACPVDAI 118
           + CP DAI
Sbjct: 584 DKCPFDAI 591



 Score = 39.3 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/34 (41%), Positives = 18/34 (52%)

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                 +  +RY ID  KC  CGLC + CPV+ I
Sbjct: 528 CPAGACQALIRYRIDQDKCKKCGLCAKNCPVNCI 561


>gi|256829154|ref|YP_003157882.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfomicrobium baculatum DSM 4028]
 gi|256578330|gb|ACU89466.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Desulfomicrobium baculatum DSM 4028]
          Length = 794

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 27/61 (44%), Gaps = 6/61 (9%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C  C +CEAICP  AI+ E+ P              D  KCI CG C  ACP       P
Sbjct: 736 CRDCGICEAICPRGAISREALPDNEFAM------VCDSEKCIGCGFCAGACPCGIWTLIP 789

Query: 123 N 123
           N
Sbjct: 790 N 790


>gi|187924671|ref|YP_001896313.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia
           phytofirmans PsJN]
 gi|187715865|gb|ACD17089.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia
           phytofirmans PsJN]
          Length = 413

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 11/68 (16%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             LR++    E CI C  CE  CP  AIT +              Y +    C  C  C 
Sbjct: 8   EVLRQHLIDPEICIRCNTCEETCPVDAITHDDN-----------NYVVKAEICNGCMACV 56

Query: 111 EACPVDAI 118
             CP  AI
Sbjct: 57  PPCPTGAI 64



 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/26 (53%), Positives = 15/26 (57%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPN 123
           ID   CI C  C+E CPVDAI    N
Sbjct: 15  IDPEICIRCNTCEETCPVDAITHDDN 40


>gi|238916679|ref|YP_002930196.1| putative pyruvate-flavodoxin oxidoreductase [Eubacterium eligens
           ATCC 27750]
 gi|238872039|gb|ACR71749.1| putative pyruvate-flavodoxin oxidoreductase [Eubacterium eligens
           ATCC 27750]
          Length = 1186

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 37/111 (33%), Gaps = 19/111 (17%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ--------------AITIESG 83
           FE G+++   RG   +         C+ C  C  +C                 A +    
Sbjct: 673 FETGASAYEKRGTAVMVPEW-DPTACVQCNSCAFVCSHATIRPFILSTDEVNAAPSNIKL 731

Query: 84  PRCHDGTRRTVRYDID--MIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130
                   +T++Y +    + C+ CG C   CP   +AI   P    A E 
Sbjct: 732 ADSKHAIDKTMKYTMSVSPLDCMGCGECVTVCPKAGEAIKMVPQESQADEQ 782


>gi|121535727|ref|ZP_01667530.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
 gi|121305692|gb|EAX46631.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
          Length = 147

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 9/68 (13%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           R+      RC  C  C A+C ++A+ +E         R T        KCI CGLC +AC
Sbjct: 77  RQIQVDTGRCTHCGACTAVCFSRALVLE---------RPTWELSFHPDKCIVCGLCVQAC 127

Query: 114 PVDAIVEG 121
           PV AI +G
Sbjct: 128 PVRAIRQG 135


>gi|46200681|ref|ZP_00207795.1| COG0369: Sulfite reductase, alpha subunit (flavoprotein)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 393

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 11/65 (16%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           R++      CI C  CE  CP  AIT +              Y +   KC  C  C   C
Sbjct: 5   RQHLIDPVVCIRCNTCEEACPVDAITHDG-----------TNYVVSFDKCTGCRTCVSPC 53

Query: 114 PVDAI 118
           P  AI
Sbjct: 54  PTGAI 58



 Score = 39.3 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)

Query: 98  IDMIKCIYCGLCQEACPVDAI-VEGPNFEFATET 130
           ID + CI C  C+EACPVDAI  +G N+  + + 
Sbjct: 9   IDPVVCIRCNTCEEACPVDAITHDGTNYVVSFDK 42


>gi|297568110|ref|YP_003689454.1| FAD dependent oxidoreductase [Desulfurivibrio alkaliphilus AHT2]
 gi|296924025|gb|ADH84835.1| FAD dependent oxidoreductase [Desulfurivibrio alkaliphilus AHT2]
          Length = 680

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 27/87 (31%), Gaps = 8/87 (9%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P    +         A+R    G   C  C +CE  C   AI+                Y
Sbjct: 601 PVIPTAPPAATPESEAIRCVSCG--LCRDCHICENTCHYGAISRRDLGEGEF------EY 652

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPN 123
            +D  +CI CG C   CP        N
Sbjct: 653 VVDPDRCIGCGFCAGTCPCGIWEMEEN 679


>gi|224013016|ref|XP_002295160.1| nadp-reducing hydrogenase [Thalassiosira pseudonana CCMP1335]
 gi|220969122|gb|EED87464.1| nadp-reducing hydrogenase [Thalassiosira pseudonana CCMP1335]
          Length = 585

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 2/70 (2%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACP 114
                +CI C LC   C AQ I          G      +D  + +  CI CG C   CP
Sbjct: 156 WRDMSKCIECGLCVDACSAQKINAIGFAERGSGMLPITAFDKPLSETGCISCGQCILRCP 215

Query: 115 VDAIVEGPNF 124
           V A++E P++
Sbjct: 216 VGALIERPDW 225


>gi|134299396|ref|YP_001112892.1| electron transfer flavoprotein subunit beta [Desulfotomaculum
           reducens MI-1]
 gi|134052096|gb|ABO50067.1| electron transfer flavoprotein beta-subunit [Desulfotomaculum
           reducens MI-1]
          Length = 439

 Score = 52.0 bits (123), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 10/63 (15%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+ C+ C   CP +A+ +                 +   KC+ CG C E CPV+A+    
Sbjct: 9   CMGCQACITSCPHEALFMNDAG----------VCQVIPEKCVDCGECVEVCPVEALSSPK 58

Query: 123 NFE 125
           N E
Sbjct: 59  NTE 61


>gi|312880261|ref|ZP_07740061.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Aminomonas
           paucivorans DSM 12260]
 gi|310783552|gb|EFQ23950.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Aminomonas
           paucivorans DSM 12260]
          Length = 137

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 14/96 (14%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
                  +RG  A         +CI C+LC  +CPA AI      +         +  I 
Sbjct: 48  PVEPPEGYRGRIA-----YDRGKCIGCRLCIKVCPANAIEFVPEEK---------KIRIH 93

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
           + +C +C  C E CPV  +        +   R+E  
Sbjct: 94  VDRCCFCEQCTEICPVSCLWMTRECLVSGTDRREQV 129



 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 18/55 (32%)

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           C  +           P          R   D  KCI C LC + CP +AI   P 
Sbjct: 32  CGFLRDVAEGKRSLCPPVEPPEGYRGRIAYDRGKCIGCRLCIKVCPANAIEFVPE 86


>gi|295707101|ref|YP_003600176.1| formate dehydrogenase subunit alpha [Bacillus megaterium DSM 319]
 gi|294804760|gb|ADF41826.1| formate dehydrogenase, alpha subunit [Bacillus megaterium DSM 319]
          Length = 979

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+     +     + +   Y     +CIAC  C  +C    +             R
Sbjct: 123 HQKYPY--TPKASENEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAKRPR 180

Query: 93  TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120
            +  D   I+   C+ CG C   CP +A++E
Sbjct: 181 VLWDDGVAINESSCVSCGQCVTVCPCNALME 211



 Score = 40.1 bits (92), Expect = 0.099,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 22/71 (30%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+    A+ + IE     +               Y  D  +
Sbjct: 91  RLLENHLLYCTVCDNNNGNCKLHNTAEMMEIEHQKYPYTPKASENEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|304315847|ref|YP_003850992.1| pyruvate ferredoxin/flavodoxin oxidoreductase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302777349|gb|ADL67908.1| pyruvate ferredoxin/flavodoxin oxidoreductase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 1172

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 40/123 (32%), Gaps = 30/123 (24%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG   +       E+CI C  C  +CP                A       +        
Sbjct: 675 RGIAVMIPQWQ-IEKCIQCNQCSFVCPHAVIRPFLLNDEEAKNAPPTFETKKAVGRGLEA 733

Query: 94  VRYDID--MIKCIYCGLCQEACPVD--AIVEGP----------NFEFATE-TRQELYYDK 138
            +Y I    + C  CG C + CP    A+V  P          N+E+A +   ++   +K
Sbjct: 734 FQYRIQVSPLDCTGCGNCADVCPAPGKALVMMPAEGEIESQADNWEYAVKIKPKDNIMEK 793

Query: 139 ERL 141
             L
Sbjct: 794 TTL 796


>gi|260891188|ref|ZP_05902451.1| electron transport complex, RnfABCDGE type, C subunit [Leptotrichia
           hofstadii F0254]
 gi|260859215|gb|EEX73715.1| electron transport complex, RnfABCDGE type, C subunit [Leptotrichia
           hofstadii F0254]
          Length = 464

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 29/105 (27%), Gaps = 4/105 (3%)

Query: 13  LKEFVGAFFLCLRY---FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69
           L   V    +       F      I     +        G   L         CI+C  C
Sbjct: 338 LYHIVKRLKITNEEKVIFGGPMMGIEVFDSRVPVIKGTSGILFLSTEEIERNNCISCGYC 397

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
              CP   +  E       G +       ++  CI CG C+  CP
Sbjct: 398 VEACPMNLMPFEFADYYEKG-KYEKMVKANIQNCIECGACEFVCP 441



 Score = 38.5 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 17/61 (27%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNI 156
           +I+   CI CG C EACP++ +     FEFA        Y+K        ++E  +  NI
Sbjct: 385 EIERNNCISCGYCVEACPMNLMP----FEFADY------YEK-------GKYEKMVKANI 427

Query: 157 V 157
            
Sbjct: 428 Q 428


>gi|254994329|ref|ZP_05276519.1| formate dehydrogenase alpha chain [Listeria monocytogenes FSL
           J2-064]
          Length = 679

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 3/85 (3%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E+      +  + +   Y    ++CI C  C   C    +             R +  D 
Sbjct: 34  ERPYREKGYLNDFSHPFYRYDPDQCILCGRCVEACQQVQVNETLSIDWERSQPRVIWDDD 93

Query: 99  DMIK---CIYCGLCQEACPVDAIVE 120
                  C+ CGLC   CP +A++E
Sbjct: 94  RPANLSSCVSCGLCATVCPCNALME 118



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 9/68 (13%)

Query: 55  RYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCIY 105
              N    C  C      C+     + + +E   R +             Y  D  +CI 
Sbjct: 1   MLENHLLYCTVCDNNNGNCKVHNTTELLGVEKQERPYREKGYLNDFSHPFYRYDPDQCIL 60

Query: 106 CGLCQEAC 113
           CG C EAC
Sbjct: 61  CGRCVEAC 68


>gi|294501751|ref|YP_003565451.1| formate dehydrogenase subunit alpha [Bacillus megaterium QM B1551]
 gi|294351688|gb|ADE72017.1| formate dehydrogenase, alpha subunit [Bacillus megaterium QM B1551]
          Length = 979

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+     +     + +   Y     +CIAC  C  +C    +             R
Sbjct: 123 HQKYPY--TPKASENEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAKRPR 180

Query: 93  TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120
            +  D   I+   C+ CG C   CP +A++E
Sbjct: 181 VLWDDGVAINESSCVSCGQCVTVCPCNALME 211



 Score = 40.1 bits (92), Expect = 0.10,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 22/71 (30%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+    A+ + IE     +               Y  D  +
Sbjct: 91  RLLENHLLYCTVCDNNNGNCKLHNTAEMMEIEHQKYPYTPKASENEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|227499096|ref|ZP_03929233.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226904545|gb|EEH90463.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 1168

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 31/112 (27%), Gaps = 22/112 (19%)

Query: 31  KTTINYPFEKGSTS-----PRFRGEHALRRYPNGEERCIACKLCEAICPA---------- 75
             +   P+  G           RG        N  ++CI C +C  +CP           
Sbjct: 652 PVSDFVPYSNGMFPQGTSRHEKRGTSVRVSSWN-PQKCIQCNMCSYVCPHAILRPMLLTE 710

Query: 76  ----QAITIESGPRCHDGTRRTVRYDIDMI--KCIYCGLCQEACPVDAIVEG 121
                A                 R+ I +    C  CG C   CPV A+   
Sbjct: 711 EEVKGAPEGMKDIPAKGKDVEPYRFHIAVSTLDCTGCGSCANVCPVGAMEMS 762


>gi|254481381|ref|ZP_05094626.1| electron transport complex, RnfABCDGE type, C subunit subfamily,
           putative [marine gamma proteobacterium HTCC2148]
 gi|214038544|gb|EEB79206.1| electron transport complex, RnfABCDGE type, C subunit subfamily,
           putative [marine gamma proteobacterium HTCC2148]
          Length = 677

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 2/99 (2%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C +C   CPA  +  +       G         ++  CI CG C   CP   I  
Sbjct: 367 QACIRCGMCAEACPAS-LLPQQLFWFSQGKEFEKAEQHNLFDCIECGACSFVCP-SNIPL 424

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
              +  A     +L  D E+  ++  R+E+   R    D
Sbjct: 425 VQYYRAAKAEVVQLRKDAEKSEHSRIRFEARQTRLERED 463


>gi|94967761|ref|YP_589809.1| pyruvate--ferredoxin (flavodoxin) oxidoreductase [Candidatus
           Koribacter versatilis Ellin345]
 gi|94549811|gb|ABF39735.1| Pyruvate--ferredoxin (flavodoxin) oxidoreductase [Candidatus
           Koribacter versatilis Ellin345]
          Length = 1208

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 25/85 (29%), Gaps = 16/85 (18%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTR 91
             +   AL      E+ CI C  C  +CP                A              
Sbjct: 678 WEKRNIALEIPVWDEQLCIQCGKCVLVCPHAVIRAKVFKTDYTKNAPETFKTAPAKWKDL 737

Query: 92  RTVRY--DIDMIKCIYCGLCQEACP 114
           +   Y   +    C  CGLC EACP
Sbjct: 738 KDQLYSLQVAPEDCTGCGLCVEACP 762



 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 25/98 (25%), Gaps = 3/98 (3%)

Query: 23  CLRYFF--KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80
            L   F  K  TT++  F+     P    E  L       +          +        
Sbjct: 614 TLANLFEVKVPTTVSSTFDMRPPVPTHAPEFVLNVLGPIIDGRGDDLPVSMMPVDGTFPT 673

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +           +    D   CI CG C   CP   I
Sbjct: 674 ATALWEKRNIALEIPVW-DEQLCIQCGKCVLVCPHAVI 710


>gi|294102067|ref|YP_003553925.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Aminobacterium
           colombiense DSM 12261]
 gi|293617047|gb|ADE57201.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Aminobacterium
           colombiense DSM 12261]
          Length = 1186

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 16/78 (20%)

Query: 61  ERCIACKLCEAICPAQAITI----------------ESGPRCHDGTRRTVRYDIDMIKCI 104
           ++CI C  C  +CP  AI                      +  +    + R  +  + C+
Sbjct: 692 DKCIQCNQCAMVCPHAAIRPVLLDEEEKKNAPATFATVEAKGKEFAGLSFRMQVSSLDCL 751

Query: 105 YCGLCQEACPVDAIVEGP 122
            CG C + CPV A+   P
Sbjct: 752 GCGNCVDICPVSALEMKP 769


>gi|224368284|ref|YP_002602447.1| HdrA1 [Desulfobacterium autotrophicum HRM2]
 gi|223691000|gb|ACN14283.1| HdrA1 [Desulfobacterium autotrophicum HRM2]
          Length = 1016

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 31/82 (37%), Gaps = 14/82 (17%)

Query: 57  PNGEERCIACKLCEAICPAQAIT-------IESGPRCHDGTRRTVRYDIDMIKCI----- 104
              E++CIAC LC   CP +                   G    ++Y ID   CI     
Sbjct: 103 YVDEDKCIACGLCAEKCPKKVPDEYNEGLNYRKAAYIKYGQTVPLKYAIDPDNCIMINKG 162

Query: 105 YCGLCQEACPVDAIV--EGPNF 124
            CG+C + CP  AI     P F
Sbjct: 163 KCGVCAKICPTGAINFEMKPEF 184



 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C  C LC  +CP  A+T+          RR      D   C  CG+C   CP + I
Sbjct: 941 QNCDGCALCLDVCPYNALTLVEFEENGKQHRRIKT---DRALCKGCGICAATCPKEGI 995


>gi|20808299|ref|NP_623470.1| MinD family protein [Thermoanaerobacter tengcongensis MB4]
 gi|20516902|gb|AAM25074.1| MinD superfamily P-loop ATPase containing an inserted ferredoxin
           domain [Thermoanaerobacter tengcongensis MB4]
          Length = 290

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 22/108 (20%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE-------ERCIACKLCEAICPA 75
            L    K K   +   E  + +   +GE   +    G+       ++CI C LCE +C  
Sbjct: 21  TLSTIVKNKIMADCDVEAPNLNIILQGEIVEKYDFYGKETAVIDKDKCIECGLCEELCRF 80

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
            AI+                ++++   C  CGLC   CPV+AI     
Sbjct: 81  NAISN---------------FEVNPYYCEGCGLCMYKCPVEAIKMVEE 113


>gi|85707196|ref|ZP_01038282.1| NAD-dependent formate dehydrogenase, alpha subunit [Roseovarius sp.
           217]
 gi|85668250|gb|EAQ23125.1| NAD-dependent formate dehydrogenase, alpha subunit [Roseovarius sp.
           217]
          Length = 964

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 30/93 (32%), Gaps = 4/93 (4%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDID 99
                 + +   +     +CI C  C   C       A+TI+        +      D  
Sbjct: 166 PEWLPKDDSNPYFSYDPSKCIVCNRCVRACEEVQGTFALTIQGRGFDSRVSAGNAGDDFL 225

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
              C+ CG C +ACP   + E    E  T  R 
Sbjct: 226 ASDCVSCGACVQACPTATLQEKSIIELGTPDRS 258


>gi|146304084|ref|YP_001191400.1| formate dehydrogenase subunit alpha [Metallosphaera sedula DSM
           5348]
 gi|145702334|gb|ABP95476.1| formate dehydrogenase, alpha subunit [Metallosphaera sedula DSM
           5348]
          Length = 973

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 3/86 (3%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
           F +      +  +++   Y     +CI C  C   C   A+        +    R V   
Sbjct: 119 FHQRYVEKPYSLDNSGPFYVYDPAQCILCGRCVEACQDFAVNEVIWIDWNLNPPRVVWDQ 178

Query: 98  ---IDMIKCIYCGLCQEACPVDAIVE 120
              I    C+ CG C   CPV+A++E
Sbjct: 179 GNPIGNSSCVNCGTCVTVCPVNALME 204



 Score = 40.5 bits (93), Expect = 0.077,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 28/84 (33%), Gaps = 7/84 (8%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKL-------CEAICPAQAITIESGPRCHDGTRRTVRY 96
           S   R E   R     +  C  C+         EA+   +        + +        Y
Sbjct: 78  SKGARKEAISRILRYHKLYCTVCENNNGDCVLHEAVIKEKVFHQRYVEKPYSLDNSGPFY 137

Query: 97  DIDMIKCIYCGLCQEACPVDAIVE 120
             D  +CI CG C EAC   A+ E
Sbjct: 138 VYDPAQCILCGRCVEACQDFAVNE 161


>gi|37679887|ref|NP_934496.1| ferredoxin [Vibrio vulnificus YJ016]
 gi|37198632|dbj|BAC94467.1| ferredoxin [Vibrio vulnificus YJ016]
          Length = 557

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 35/104 (33%), Gaps = 12/104 (11%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T   P E            A+     G   C  C  C A+CP +A+  +          
Sbjct: 396 ATSRVPVENTVALSSHAPYGAVSCATTG---CTLCMSCVAVCPTRALHTDGE-------- 444

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            +         C+ CGLC +ACP   +   P   +  E+RQ   
Sbjct: 445 -SPSLQFVEQDCVQCGLCTKACPEQVLTLTPRMNWDKESRQAAV 487



 Score = 39.3 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           C+ C   CPA A+T +   +           +I+   C   G C  +CP +AI 
Sbjct: 190 CERCVDACPAGALTSQGSDKTGH------HIEINPYLCQGVGTCATSCPTEAIH 237


>gi|304315067|ref|YP_003850214.1| tungsten containing formylmethanofuran dehydrogenase, subunit F
           related protein [Methanothermobacter marburgensis str.
           Marburg]
 gi|302588526|gb|ADL58901.1| predicted tungsten containing formylmethanofuran dehydrogenase,
           subunit F related protein [Methanothermobacter
           marburgensis str. Marburg]
          Length = 332

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 30/74 (40%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R            E+CI C  C A+CP  AI I                 +D  KC+YCG
Sbjct: 129 RKSLVKGEINVSMEKCIYCGECAAMCPVSAIEISWRDPDSSNMAIADGIRVDEDKCLYCG 188

Query: 108 LCQEACPVDAIVEG 121
           +C+  CPV AI   
Sbjct: 189 ICKRICPVGAIRMS 202



 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 4/81 (4%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---- 97
              P  RG   + R    +E+C+ C LC ++C   AI ++   +   G      +D    
Sbjct: 40  PLLPIARGLIKMNRVSFNKEKCVLCGLCASVCIFGAIDLQKDGKSIRGADEYPFWDFKLE 99

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID  KC  CG C +ACP +A+
Sbjct: 100 IDDEKCFLCGNCADACPRNAL 120



 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 27/76 (35%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R     R      + C  C LC   CP  AI I        G  +  R   +  KC+ CG
Sbjct: 6   RMGSERRTLNYNPDLCTGCGLCSETCPVDAIDIAPLLPIARGLIKMNRVSFNKEKCVLCG 65

Query: 108 LCQEACPVDAIVEGPN 123
           LC   C   AI    +
Sbjct: 66  LCASVCIFGAIDLQKD 81



 Score = 41.2 bits (95), Expect = 0.045,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%)

Query: 59  GEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
            E++C+ C +C+ ICP  AI +       +                KC +CG C E CP 
Sbjct: 180 DEDKCLYCGICKRICPVGAIRMSCLTCMYKEELKATVEGAVITIDEKCAHCGWCMEICPA 239

Query: 116 DAI 118
           +AI
Sbjct: 240 NAI 242



 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 10/64 (15%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY--CGLCQEACPVDAI 118
           E+C  C  C  ICPA AIT++   R   G            +C    C  C + CP +AI
Sbjct: 225 EKCAHCGWCMEICPANAITVKKPIRGTIGQA--------DERCRGESCHACVDVCPCNAI 276

Query: 119 VEGP 122
               
Sbjct: 277 SIIN 280


>gi|51894343|ref|YP_077034.1| iron hydrogenase beta subunit [Symbiobacterium thermophilum IAM
           14863]
 gi|51858032|dbj|BAD42190.1| iron hydrogenase beta subunit [Symbiobacterium thermophilum IAM
           14863]
          Length = 618

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 13/98 (13%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            LRY F+ +   +   +            AL  +   +ERC AC +C   CP  A+  E 
Sbjct: 534 TLRY-FREEYEAHVRDKHCPAGRC----KALTDFRIDQERCKACNVCARNCPVDAVHGE- 587

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
                   R+   + ID   CI CG C   C  +A+V 
Sbjct: 588 -------VRKPETFYIDAEACIKCGTCATVCKFNAVVW 618


>gi|187935649|ref|YP_001886506.1| dihydropyrimidine dehydrogenase [Clostridium botulinum B str.
           Eklund 17B]
 gi|187723802|gb|ACD25023.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum
           B str. Eklund 17B]
          Length = 412

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 7/94 (7%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           K            +      EE+C+ C  C   C   A                 + +++
Sbjct: 322 KNIIPAEDLDREYIVYPKVDEEKCLGCGRCYISCYDGAHQAIK------WNAEERKPEVN 375

Query: 100 MIKCIYCGLCQEACPVDAIVEGPN-FEFATETRQ 132
             +C+ C LC   CPV AI +G   F+   + R+
Sbjct: 376 KDRCVGCHLCALVCPVTAIGKGEIKFKNNGKERE 409


>gi|154502471|ref|ZP_02039531.1| hypothetical protein RUMGNA_00284 [Ruminococcus gnavus ATCC 29149]
 gi|153796867|gb|EDN79287.1| hypothetical protein RUMGNA_00284 [Ruminococcus gnavus ATCC 29149]
          Length = 506

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQ 110
              +E+CI C  C+A+CP  AI  +  P  +          +  R  ID  KC+ CG+C 
Sbjct: 150 YIDQEKCIKCGKCKAVCPYDAIAKKERPCKNACGVGAIVSDKYGRAYIDTEKCVSCGMCM 209

Query: 111 EACPVDAI 118
            +CP  AI
Sbjct: 210 VSCPFGAI 217



 Score = 41.6 bits (96), Expect = 0.032,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 13/64 (20%)

Query: 57  PNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 C  C    C  +CP  AI++ +G              ID  KCI CG C+  CP
Sbjct: 119 YEVSNMCKGCLAHPCSEVCPKGAISMVNGKSY-----------IDQEKCIKCGKCKAVCP 167

Query: 115 VDAI 118
            DAI
Sbjct: 168 YDAI 171


>gi|186476296|ref|YP_001857766.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia
           phymatum STM815]
 gi|184192755|gb|ACC70720.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia
           phymatum STM815]
          Length = 416

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 24/68 (35%), Gaps = 11/68 (16%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             L+++    E CI C  CE  CP  AI  +              Y +    C  C  C 
Sbjct: 8   EVLKQHLIDPEICIRCNTCEETCPIDAIQHDD-----------TNYVVMPDVCNGCMACV 56

Query: 111 EACPVDAI 118
             CP  AI
Sbjct: 57  PPCPTGAI 64



 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 16/39 (41%)

Query: 84  PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                      ++ ID   CI C  C+E CP+DAI    
Sbjct: 1   MNAPVSIEVLKQHLIDPEICIRCNTCEETCPIDAIQHDD 39


>gi|89900968|ref|YP_523439.1| putative glutamate synthase (NADPH) small subunit [Rhodoferax
           ferrireducens T118]
 gi|89345705|gb|ABD69908.1| 2-oxoacid:acceptor oxidoreductase, delta subunit,
           pyruvate/2-ketoisovalerate [Rhodoferax ferrireducens
           T118]
          Length = 541

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 9/62 (14%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C  C  C  +CP  A+      +          +D +   C  CG+C   CP  AI   
Sbjct: 487 NCFECDNCYGVCPDNAVIKHGPGKG---------FDFNYDYCKGCGICVSECPCGAIKMV 537

Query: 122 PN 123
           P 
Sbjct: 538 PE 539


>gi|307265233|ref|ZP_07546791.1| Ferredoxin hydrogenase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306919677|gb|EFN49893.1| Ferredoxin hydrogenase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 513

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110
               ++CI C  C+ +CP  AI+    P       + +  D      I+  KC  CG+C 
Sbjct: 131 HIDYDKCIECGRCKDVCPYNAISDTLRPCIRSCAAKAIIMDEELKAVINYEKCTSCGMCT 190

Query: 111 EACPVDAI 118
            ACP  AI
Sbjct: 191 LACPFGAI 198



 Score = 41.2 bits (95), Expect = 0.049,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 5/64 (7%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTR-----RTVRYDIDMIKCIYCGLCQEACPVDA 117
           C  C +             +        R     R  R  ID  KCI CG C++ CP +A
Sbjct: 92  CEGCPIKRYRVTEACRGCLAHKCIEVCPRGAISIRDKRAHIDYDKCIECGRCKDVCPYNA 151

Query: 118 IVEG 121
           I + 
Sbjct: 152 ISDT 155


>gi|307267360|ref|ZP_07548855.1| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306917618|gb|EFN47897.1| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 291

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 40/110 (36%), Gaps = 22/110 (20%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG-------EERCIACKLCEAIC 73
              L    K K   +   E  + +   +GE   ++   G        ++CI C LCE +C
Sbjct: 19  ATTLSTIVKNKIMADCDVEAPNLNIVLQGEIIEKQDFYGKETAVIDRDKCIECGLCEELC 78

Query: 74  PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
              AI+                +++    C  CGLC   CPV+AI     
Sbjct: 79  RFDAISN---------------FEVYPYYCEGCGLCMYKCPVEAIKLVEE 113


>gi|306821643|ref|ZP_07455241.1| NADH dehydrogenase (quinone) [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304550388|gb|EFM38381.1| NADH dehydrogenase (quinone) [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 527

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 10/64 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               E+CI C  C  +CP + I      R          + I   +CI CG C EACPV 
Sbjct: 473 YYITEKCIGCTKCANVCPVKCIDGSIKKR----------HVITAQQCIKCGQCYEACPVH 522

Query: 117 AIVE 120
           AI  
Sbjct: 523 AIEL 526


>gi|257463022|ref|ZP_05627425.1| hydrogenase, Fe-only [Fusobacterium sp. D12]
          Length = 652

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 31/85 (36%), Gaps = 10/85 (11%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
            E         G+          E+CI C  C  +CP + I      R            
Sbjct: 200 EEHVEDLKCPAGQCIHLLKFKITEKCIGCTACARVCPVKCIAGAPKKRHF---------- 249

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           +D  +C +CG C  ACPV AI EG 
Sbjct: 250 LDTSRCTHCGQCVSACPVGAIFEGD 274


>gi|297544478|ref|YP_003676780.1| Ferredoxin hydrogenase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296842253|gb|ADH60769.1| Ferredoxin hydrogenase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 506

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110
               ++CI C  C+ +CP  AI+    P       + +  D      I+  KC  CG+C 
Sbjct: 131 HIDYDKCIECGRCKDVCPYNAISDTLRPCIRSCAAKAITMDEELKAVINYEKCTSCGMCT 190

Query: 111 EACPVDAI 118
            ACP  AI
Sbjct: 191 LACPFGAI 198



 Score = 41.2 bits (95), Expect = 0.050,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 5/64 (7%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTR-----RTVRYDIDMIKCIYCGLCQEACPVDA 117
           C  C +             +        R     R  R  ID  KCI CG C++ CP +A
Sbjct: 92  CEGCPIKRYRVTEACRGCLAHKCIEVCPRGAISIRDKRAHIDYDKCIECGRCKDVCPYNA 151

Query: 118 IVEG 121
           I + 
Sbjct: 152 ISDT 155


>gi|239995948|ref|ZP_04716472.1| electron transport complex protein RnfB [Alteromonas macleodii ATCC
           27126]
          Length = 193

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 32/96 (33%), Gaps = 10/96 (10%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E          E   +     E+ CI C  C   CP  AI   +             + +
Sbjct: 94  EPKPLDAAHGEEDVKKVAFIREDECIGCTKCIQACPVDAILGAAK----------HMHTV 143

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134
              +C  C LC + CPVD I   P  +  +  + + 
Sbjct: 144 ITDECTGCDLCVDPCPVDCIDMVPIAQTTSTWKWDF 179


>gi|228990944|ref|ZP_04150907.1| formate dehydrogenase [Bacillus pseudomycoides DSM 12442]
 gi|228768724|gb|EEM17324.1| formate dehydrogenase [Bacillus pseudomycoides DSM 12442]
          Length = 975

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+E          + +   Y     +CIAC  C  +C    +             R
Sbjct: 119 HQKYPYE--PKVDTSEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 176

Query: 93  TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120
            +     DI+   C+ CG C   CP +A++E
Sbjct: 177 VIWDDGVDINDSSCVSCGQCVTICPCNALME 207



 Score = 40.1 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 87  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDTSEVDMSHPFYRYDPNQ 146

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 147 CIACGQCVEVC 157


>gi|167629239|ref|YP_001679738.1| hypothetical protein HM1_0833 [Heliobacterium modesticaldum Ice1]
 gi|167591979|gb|ABZ83727.1| conserved hypothetical protein [Heliobacterium modesticaldum Ice1]
          Length = 295

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 9/69 (13%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           R     ++ CI C  C  +C   AI  +         R   +  I    C  CG C + C
Sbjct: 59  RSLTWNKDGCIFCGRCLKVCRFDAIKFD---------RSGPKQVISPFACEGCGCCVDVC 109

Query: 114 PVDAIVEGP 122
           P +A    P
Sbjct: 110 PGEAFTLTP 118


>gi|91784371|ref|YP_559577.1| dihydropyrimidine dehydrogenase [Burkholderia xenovorans LB400]
 gi|91688325|gb|ABE31525.1| dihydropyrimidine dehydrogenase (NADP+) / dihydroorotate oxidase B,
           catalytic subunit [Burkholderia xenovorans LB400]
          Length = 444

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 8/75 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117
            +++CI C LC   C   A       +          +++   +C+ C LC   CPV   
Sbjct: 341 DQDKCIQCGLCHIACEDTAHQAIMKEKDGV-----RHFEVMDSECVGCNLCMHVCPVEQC 395

Query: 118 IVE--GPNFEFATET 130
           I      N E+A  T
Sbjct: 396 ITMERVDNGEYANWT 410


>gi|294637339|ref|ZP_06715635.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Edwardsiella tarda
           ATCC 23685]
 gi|291089496|gb|EFE22057.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Edwardsiella tarda
           ATCC 23685]
          Length = 964

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 24/83 (28%), Gaps = 16/83 (19%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVR 95
             AL       E CI C  C  +CP                A                 R
Sbjct: 683 NIALEIPIWRPELCIQCGNCAFVCPHAAIRAKFYHQDRLTGAPDDFRSAPISARGFPETR 742

Query: 96  Y--DIDMIKCIYCGLCQEACPVD 116
           Y   +    C  CGLC EACPV 
Sbjct: 743 YTLQVYPEDCTGCGLCVEACPVR 765



 Score = 37.4 bits (85), Expect = 0.63,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 13/51 (25%)

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWES 150
              CI CG C   CP  AI            R +  Y ++RL    D + S
Sbjct: 693 PELCIQCGNCAFVCPHAAI------------RAKF-YHQDRLTGAPDDFRS 730


>gi|297570515|ref|YP_003691859.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296926430|gb|ADH87240.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 682

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 41/105 (39%), Gaps = 18/105 (17%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E+ + S   R            +RC+ C  C  +CP QA  IE                I
Sbjct: 469 EEQAVSEARRCLECGNGARVTADRCVKCLNCVRLCPYQAPRIE------------QVALI 516

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLN 143
           +  +C+ CG+C  ACP  AI        A  T ++L  +  +LL 
Sbjct: 517 NRERCLACGICHGACPTGAIKM------AGGTPEQLAAELPQLLA 555


>gi|18976577|ref|NP_577934.1| glutamate synthase subunit alpha [Pyrococcus furiosus DSM 3638]
 gi|18892138|gb|AAL80329.1| glutamate synthase subunit alpha [Pyrococcus furiosus DSM 3638]
          Length = 502

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 14/107 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++RCI C  C   CP       +               ID  KC+ C  C   CP DA+
Sbjct: 14  DDKRCIKCGACIYQCPFGVYKWNADKSD---------ITIDYTKCVGCQRCVVFCPTDAL 64

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT--DSPYR 163
           +  P   +    +   Y+++E + +   + E   V    T  D PY+
Sbjct: 65  IVRP---YPGSYKPNAYWNREVISDIKRQAEGGGVLLTGTGNDKPYK 108


>gi|332973049|gb|EGK10986.1| iron-sulfur cluster-binding protein [Kingella kingae ATCC 23330]
          Length = 285

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 26/69 (37%), Gaps = 10/69 (14%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C  C   CP  AI   S           + + +   +C  CGLC   CPVD
Sbjct: 73  WIDEAVCIGCTACIRACPVDAIMGASK----------LMHTVLADECTGCGLCVAPCPVD 122

Query: 117 AIVEGPNFE 125
            I   P  E
Sbjct: 123 CIYLQPTKE 131



 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 19/43 (44%)

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           A  +         + + V   ID   CI C  C  ACPVDAI+
Sbjct: 53  ATALHRETTSPQKSHQNVIAWIDEAVCIGCTACIRACPVDAIM 95


>gi|330834752|ref|YP_004409480.1| formate dehydrogenase, alpha subunit [Metallosphaera cuprina Ar-4]
 gi|329566891|gb|AEB94996.1| formate dehydrogenase, alpha subunit [Metallosphaera cuprina Ar-4]
          Length = 964

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY---DIDMIKCIYCGLCQE 111
            Y     +CI C  C   C   A+             R V     +I    C+ CG C  
Sbjct: 127 FYVYDPNQCILCGRCVEACQDFAVNEVIWINWDLDPPRVVWDKGSNIGDSSCVNCGTCVT 186

Query: 112 ACPVDAIVE 120
            CPV+A++E
Sbjct: 187 VCPVNALME 195



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 22/55 (40%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           C L  A+   +    +   + +        Y  D  +CI CG C EAC   A+ E
Sbjct: 98  CDLHNAVVKERTFRQDYLNKPYSQDSSGPFYVYDPNQCILCGRCVEACQDFAVNE 152


>gi|223984601|ref|ZP_03634728.1| hypothetical protein HOLDEFILI_02024 [Holdemania filiformis DSM
           12042]
 gi|223963448|gb|EEF67833.1| hypothetical protein HOLDEFILI_02024 [Holdemania filiformis DSM
           12042]
          Length = 628

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 36/96 (37%), Gaps = 14/96 (14%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            LR  F+ +   +   ++            L  Y    E+C  C +C   CP  AI+   
Sbjct: 544 TLR-LFRDEYEAHVKEKRCPAGVC----KKLLHYSIDPEKCRKCSMCARNCPVGAISGVP 598

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           G +          Y ID  KCI CG C E C   A+
Sbjct: 599 GQKP---------YVIDHDKCIKCGACMETCRFGAV 625



 Score = 38.5 bits (88), Expect = 0.32,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 19/44 (43%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            ++         ++ + Y ID  KC  C +C   CPV AI   P
Sbjct: 555 HVKEKRCPAGVCKKLLHYSIDPEKCRKCSMCARNCPVGAISGVP 598


>gi|86146002|ref|ZP_01064329.1| iron-sulfur cluster-binding protein [Vibrio sp. MED222]
 gi|85836207|gb|EAQ54338.1| iron-sulfur cluster-binding protein [Vibrio sp. MED222]
          Length = 553

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 36/102 (35%), Gaps = 9/102 (8%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
              + C  C  C A+CP +A+  +           +         CI CGLC++ACP + 
Sbjct: 415 CESKDCTLCMSCVAVCPTRALHTDGA---------SPSLKFVEQDCIQCGLCEKACPENV 465

Query: 118 IVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
           +   P   +  E RQ+     E       R         + D
Sbjct: 466 LTLTPRMNWVKEERQKAVVIHEEKAAECLRCHKPFAPQSMID 507



 Score = 37.4 bits (85), Expect = 0.73,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 6/53 (11%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C+ C   CPA A++ E   +         + +I+   C   G C  +CP +AI
Sbjct: 186 CERCVDACPAGALSSEGSDKTGH------KIEINPYLCQGVGTCATSCPTEAI 232


>gi|328951911|ref|YP_004369245.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfobacca acetoxidans DSM 11109]
 gi|328452235|gb|AEB08064.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfobacca acetoxidans DSM 11109]
          Length = 262

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 1/65 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRT-VRYDIDMIKCIYCGLCQEACPVDA 117
             + C+ C LC  +C               G RR    +++    CI CG C E CP  A
Sbjct: 124 DMDLCVLCGLCVRVCQEAIGASAISFVGRGGNRRVSTPFEMHSEACIGCGACAEICPTGA 183

Query: 118 IVEGP 122
           I    
Sbjct: 184 IRMED 188


>gi|257469186|ref|ZP_05633280.1| hydrogenase, Fe-only [Fusobacterium ulcerans ATCC 49185]
 gi|317063434|ref|ZP_07927919.1| hydrogenase [Fusobacterium ulcerans ATCC 49185]
 gi|313689110|gb|EFS25945.1| hydrogenase [Fusobacterium ulcerans ATCC 49185]
          Length = 644

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 10/62 (16%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E+CI C  C  +CP + I+ +   R          + +D  +C +CG C  ACPV AI E
Sbjct: 221 EKCIGCTACARVCPVKCISGKIKER----------HILDTSRCTHCGQCVAACPVGAIFE 270

Query: 121 GP 122
           G 
Sbjct: 271 GD 272


>gi|254247589|ref|ZP_04940910.1| Electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           cenocepacia PC184]
 gi|124872365|gb|EAY64081.1| Electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           cenocepacia PC184]
          Length = 342

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 22/66 (33%), Gaps = 10/66 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C LC   CP  AI                 + I    C  C LC   CPVD
Sbjct: 118 FIDENLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVASLCTGCDLCVPPCPVD 167

Query: 117 AIVEGP 122
            I   P
Sbjct: 168 CIAMLP 173


>gi|153812810|ref|ZP_01965478.1| hypothetical protein RUMOBE_03217 [Ruminococcus obeum ATCC 29174]
 gi|149831170|gb|EDM86259.1| hypothetical protein RUMOBE_03217 [Ruminococcus obeum ATCC 29174]
          Length = 501

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 7/83 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRC------HDGTRRTVRYDIDMIKCIYCGLCQ 110
              +++CI C  C+A CP  AI+    P          G+    R  I   KC+ CG+C 
Sbjct: 146 YIDQDKCIKCGKCKAACPYDAISHNIRPCEQACGVKAIGSDEQGRASILEDKCVSCGMCM 205

Query: 111 EACPVDAI-VEGPNFEFATETRQ 132
            +CP  AI  +   F+ A   R 
Sbjct: 206 VSCPFGAISDKSQIFQLAHALRG 228



 Score = 41.6 bits (96), Expect = 0.039,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 13/62 (20%)

Query: 61  ERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             C  C    C   CP  AI+++ G              ID  KCI CG C+ ACP DAI
Sbjct: 119 NMCRGCVAHPCMQACPKGAISMKDGKSY-----------IDQDKCIKCGKCKAACPYDAI 167

Query: 119 VE 120
             
Sbjct: 168 SH 169


>gi|254974516|ref|ZP_05270988.1| iron-dependent hydrogenase [Clostridium difficile QCD-66c26]
 gi|255313641|ref|ZP_05355224.1| iron-dependent hydrogenase [Clostridium difficile QCD-76w55]
 gi|255516325|ref|ZP_05384001.1| iron-dependent hydrogenase [Clostridium difficile QCD-97b34]
 gi|255649424|ref|ZP_05396326.1| iron-dependent hydrogenase [Clostridium difficile QCD-37x79]
 gi|260682592|ref|YP_003213877.1| iron-dependent hydrogenase [Clostridium difficile CD196]
 gi|260686192|ref|YP_003217325.1| iron-dependent hydrogenase [Clostridium difficile R20291]
 gi|306519505|ref|ZP_07405852.1| iron-dependent hydrogenase [Clostridium difficile QCD-32g58]
 gi|260208755|emb|CBA61611.1| iron-dependent hydrogenase [Clostridium difficile CD196]
 gi|260212208|emb|CBE02900.1| iron-dependent hydrogenase [Clostridium difficile R20291]
          Length = 498

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 7/69 (10%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIKCIYCGLC 109
               + C AC +C++ C   AI+    P             R T++  I    CI CG C
Sbjct: 138 YINHDLCKACGMCKSSCQYDAISEVVRPCKSVCPTGALDFNRNTMKAMIHEDNCINCGAC 197

Query: 110 QEACPVDAI 118
             ACP  AI
Sbjct: 198 ISACPFGAI 206


>gi|14250934|emb|CAC39230.1| HymB protein [Eubacterium acidaminophilum]
          Length = 597

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 10/58 (17%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           ++CI C  C  +CP  AI+           +   ++ ID  KCI CG C +ACPV+AI
Sbjct: 547 DKCIGCTKCARVCPVTAISG----------KVKEKHVIDTDKCIKCGACMDACPVNAI 594


>gi|4972238|emb|CAB43933.1| pyruvate ferredoxin oxidoreductase [Clostridium pasteurianum]
          Length = 1175

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 34/102 (33%), Gaps = 20/102 (19%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG   +       ++CI C  C  ICP               +A       +        
Sbjct: 675 RGIAVMVPEWQ-IDKCIQCNQCAYICPHATVRSFLLNDEELSKAPDTFKTKKPVGKGLEE 733

Query: 94  VRY--DIDMIKCIYCGLCQEACPVD--AIVEGP-NFEFATET 130
           + +   I  + C  CG C + CP    A++  P + E   E+
Sbjct: 734 MHFKIQISPLDCTGCGNCADVCPAPGKALIMKPADHEIEMES 775


>gi|332797392|ref|YP_004458892.1| formate dehydrogenase subunit alpha [Acidianus hospitalis W1]
 gi|332695127|gb|AEE94594.1| formate dehydrogenase, alpha subunit [Acidianus hospitalis W1]
          Length = 977

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQE 111
            Y     +CI C  C   C   A+             R +  +   I    C+ CG C  
Sbjct: 136 FYIYDPSQCILCGRCVEACQDFAVNEVIWINWDLNPPRVIWDNGNPIGNSSCVNCGTCVT 195

Query: 112 ACPVDAIVE 120
            CPV+A++E
Sbjct: 196 VCPVNALME 204



 Score = 38.9 bits (89), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 7/86 (8%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKL-------CEAICPAQAITIESGPRCHDGTRRTV 94
             +   R     R     +  C  C+         EA+      + +   + +       
Sbjct: 76  PRAVNARKTAISRILKYHKLYCSICENNNGDCVLHEAVIKLGINSQKYVEKPYSVDDTGP 135

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVE 120
            Y  D  +CI CG C EAC   A+ E
Sbjct: 136 FYIYDPSQCILCGRCVEACQDFAVNE 161


>gi|325281874|ref|YP_004254416.1| Ferredoxin hydrogenase [Odoribacter splanchnicus DSM 20712]
 gi|324313683|gb|ADY34236.1| Ferredoxin hydrogenase [Odoribacter splanchnicus DSM 20712]
          Length = 471

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 6/66 (9%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEACP 114
           E C++C LC+ +CP  AI     P       + +  D      ID  KCIYCG C +ACP
Sbjct: 147 EDCVSCGLCQKVCPYHAIVYTPVPCEDVCPVKAISKDAEGVEHIDKEKCIYCGKCMQACP 206

Query: 115 VDAIVE 120
             AI+E
Sbjct: 207 YGAIME 212



 Score = 41.6 bits (96), Expect = 0.035,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 5/68 (7%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-----IDMIKCIYCGLCQEACP 114
            E C AC   +          E  P   +  +  + +      I    C+ CGLCQ+ CP
Sbjct: 101 HEACSACIQSQYAVTNLCRGCEGRPCVMNCPKAAISFIGGKASISSEDCVSCGLCQKVCP 160

Query: 115 VDAIVEGP 122
             AIV  P
Sbjct: 161 YHAIVYTP 168


>gi|297545414|ref|YP_003677716.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296843189|gb|ADH61705.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 1171

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 40/123 (32%), Gaps = 30/123 (24%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITI----ESGPRCHDGTRR----------- 92
           RG   L       + CI C  C  +CP   I      E   +    T +           
Sbjct: 675 RGIAVLIPEWQ-IDNCIQCNQCSYVCPHAVIRPFLLTEEEMKKAPPTFKLKKAIGRGLEG 733

Query: 93  -TVRYDIDMIKCIYCGLCQEAC--PVDAIVEGP----------NFEFATE-TRQELYYDK 138
              R  +  + C  CG C + C  P  A++  P          N+E+A     ++   DK
Sbjct: 734 LWYRIQVSPLDCTGCGNCADVCPAPTKALIMKPAEEQIEKEARNWEYAVTLDVKDNLVDK 793

Query: 139 ERL 141
             L
Sbjct: 794 TTL 796


>gi|288574064|ref|ZP_06392421.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569805|gb|EFC91362.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 354

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 11/73 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +E+C+ C  C   CP +AI++  G              ID   CI CG C   CP  AI
Sbjct: 190 DDEKCVGCGRCFRNCPVKAISMTGGKAV-----------IDKDVCIGCGECLTVCPASAI 238

Query: 119 VEGPNFEFATETR 131
                 +     R
Sbjct: 239 SLDWRTDVVQFHR 251



 Score = 40.9 bits (94), Expect = 0.058,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 18/42 (42%)

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           +   P      + + R  +D  KC+ CG C   CPV AI   
Sbjct: 171 MGCAPAEGKKEQHSARMSVDDEKCVGCGRCFRNCPVKAISMT 212


>gi|220931029|ref|YP_002507937.1| NADH dehydrogenase I subunit F [Halothermothrix orenii H 168]
 gi|219992339|gb|ACL68942.1| NADH dehydrogenase I subunit F [Halothermothrix orenii H 168]
          Length = 624

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 15/100 (15%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
             L+Y F+ +   +   +K           AL+ Y    + C  C LC   CP  AI+  
Sbjct: 540 TTLKY-FRDEYEAHVKDKKCPAGVC----EALKSYKINPDLCKGCSLCARKCPVDAISG- 593

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
                    +    + ID  KCI CG C EAC  +A+  G
Sbjct: 594 ---------KVKEPFVIDQDKCIKCGACYEACKFNAVEVG 624


>gi|157363816|ref|YP_001470583.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO]
 gi|157314420|gb|ABV33519.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO]
          Length = 626

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 10/68 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
            ++Y   E+ C  C LC   CP  AI  E G            Y ID  KCI CGLC + 
Sbjct: 568 FKKYVVNEQLCKGCGLCAKSCPQNAIFGERGKP----------YKIDQEKCIKCGLCVQK 617

Query: 113 CPVDAIVE 120
           C   AI  
Sbjct: 618 CRFKAIEM 625



 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 18/40 (45%)

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
             +G           +Y ++   C  CGLC ++CP +AI 
Sbjct: 555 HLNGVCPSGTCVSFKKYVVNEQLCKGCGLCAKSCPQNAIF 594


>gi|85860375|ref|YP_462577.1| iron-sulfur cluster and nucleotide-binding protein [Syntrophus
           aciditrophicus SB]
 gi|85723466|gb|ABC78409.1| iron-sulfur cluster and nucleotide-binding protein [Syntrophus
           aciditrophicus SB]
          Length = 297

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 5/73 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ERCI C LC  +C   AI+        D         ++ + C  C LC  ACP  AI
Sbjct: 64  DPERCIGCGLCMGLCRFGAISSSKNEAGRDAGELEKPC-VNPLLCEGCKLCVRACPEQAI 122

Query: 119 VEGPNFEFATETR 131
               +FE   + R
Sbjct: 123 ----DFEPHIDGR 131



 Score = 37.0 bits (84), Expect = 0.80,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 13/27 (48%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPN 123
            ID  +CI CGLC   C   AI    N
Sbjct: 62  RIDPERCIGCGLCMGLCRFGAISSSKN 88


>gi|117925448|ref|YP_866065.1| glutamate synthase (NADPH) small subunit [Magnetococcus sp. MC-1]
 gi|117609204|gb|ABK44659.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Magnetococcus sp. MC-1]
          Length = 585

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 20/60 (33%), Gaps = 6/60 (10%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C  C  C   CP  AIT         G            +C+ C +C E CP   I  G
Sbjct: 529 MCFECNQCMLFCPQDAITKFK------GNAEGEVMFTYYERCVGCHICSEVCPTGYIDMG 582


>gi|90415121|ref|ZP_01223076.1| putative formate dehydrogenase, alpha subunit [Photobacterium
           profundum 3TCK]
 gi|90323766|gb|EAS40385.1| putative formate dehydrogenase, alpha subunit [Photobacterium
           profundum 3TCK]
          Length = 1385

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 10/70 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIE----------SGPRCHDGTRRTVRYDIDMIKCIYCGL 108
              RCI+C  C   C  +A+             S  R          Y +    C+ CG 
Sbjct: 616 DANRCISCGQCVEACNEKAVHGTLSFAKNADGSSASRPECRPGFDKGYSMGDSNCVQCGA 675

Query: 109 CQEACPVDAI 118
           C + CP  A+
Sbjct: 676 CVQVCPTGAL 685



 Score = 35.1 bits (79), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 4/53 (7%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           Y  G+  C+ C  C  +CP  A+  +                I    C YCG+
Sbjct: 663 YSMGDSNCVQCGACVQVCPTGALVDKRDKSQGRIEMLKPVETI----CTYCGV 711



 Score = 34.3 bits (77), Expect = 5.6,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 15/100 (15%)

Query: 62  RCIACKL-----CEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110
           RC+ C       C+    A    +      ++  ++    D       D  +CI CG C 
Sbjct: 568 RCLECGCQANTDCKLRDYATEYDVAETELTNESCQKFHVDDSSEFIVFDANRCISCGQCV 627

Query: 111 EACPVDAIVEG----PNFEFATETRQELYYDKERLLNNGD 146
           EAC   A+        N + ++ +R E     ++  + GD
Sbjct: 628 EACNEKAVHGTLSFAKNADGSSASRPECRPGFDKGYSMGD 667


>gi|323483907|ref|ZP_08089282.1| hypothetical protein HMPREF9474_01031 [Clostridium symbiosum
           WAL-14163]
 gi|323693503|ref|ZP_08107710.1| ferredoxin hydrogenase [Clostridium symbiosum WAL-14673]
 gi|323402745|gb|EGA95068.1| hypothetical protein HMPREF9474_01031 [Clostridium symbiosum
           WAL-14163]
 gi|323502460|gb|EGB18315.1| ferredoxin hydrogenase [Clostridium symbiosum WAL-14673]
          Length = 484

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 26/68 (38%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110
               ++C  C  C   CP  AI     P         + YD      ID  KCI CG C 
Sbjct: 126 FIDPDKCRECGKCATACPYNAIAHLERPCKKVCPVDAITYDEYGICVIDEKKCIQCGACI 185

Query: 111 EACPVDAI 118
            +CP  AI
Sbjct: 186 HSCPFGAI 193



 Score = 37.0 bits (84), Expect = 0.96,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 13/62 (20%)

Query: 61  ERCIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C  C    C++ CP  AIT+ +               ID  KC  CG C  ACP +AI
Sbjct: 99  DNCRKCMGKACQSSCPFGAITMGNNKAF-----------IDPDKCRECGKCATACPYNAI 147

Query: 119 VE 120
             
Sbjct: 148 AH 149


>gi|307297327|ref|ZP_07577133.1| cobyrinic acid ac-diamide synthase [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916587|gb|EFN46969.1| cobyrinic acid ac-diamide synthase [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 291

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 12/63 (19%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI+C +CE  C   A+             R   Y +D   C  CG+C   CP DAI  
Sbjct: 65  DSCISCGICEKYCRFDAV------------IRGGPYSVDPYACEGCGMCVAVCPADAITL 112

Query: 121 GPN 123
             N
Sbjct: 113 KDN 115


>gi|302393028|ref|YP_003828848.1| NADH dehydrogenase (quinone) [Acetohalobium arabaticum DSM 5501]
 gi|302205105|gb|ADL13783.1| NADH dehydrogenase (quinone) [Acetohalobium arabaticum DSM 5501]
          Length = 598

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 10/63 (15%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
                + C  C  C   CPA AI+ E+  +          + ID+ +CI CG C + CP 
Sbjct: 543 DYKITDDCEGCTKCVDECPADAISGEAKEQ----------HTIDVDECIKCGACVDVCPF 592

Query: 116 DAI 118
           DAI
Sbjct: 593 DAI 595


>gi|228997025|ref|ZP_04156656.1| formate dehydrogenase [Bacillus mycoides Rock3-17]
 gi|228762650|gb|EEM11566.1| formate dehydrogenase [Bacillus mycoides Rock3-17]
          Length = 979

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+E          + +   Y     +CIAC  C  +C    +             R
Sbjct: 123 HQKYPYE--PKVDASEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 180

Query: 93  TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120
            +     DI+   C+ CG C   CP +A++E
Sbjct: 181 VIWDDGVDINDSSCVSCGQCVTICPCNALME 211



 Score = 40.1 bits (92), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 91  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDASEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|27365883|ref|NP_761411.1| Iron-sulfur cluster-binding protein [Vibrio vulnificus CMCP6]
 gi|27362032|gb|AAO10938.1| Iron-sulfur cluster-binding protein [Vibrio vulnificus CMCP6]
          Length = 552

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 35/104 (33%), Gaps = 12/104 (11%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T   P E            A+     G   C  C  C A+CP +A+  +          
Sbjct: 391 ATSRVPVENIVALSSHAPYGAVSCATTG---CTLCMSCVAVCPTRALHTDGE-------- 439

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            +         C+ CGLC +ACP   +   P   +  E+RQ   
Sbjct: 440 -SPSLQFVEQDCVQCGLCTKACPEQVLTLTPRMNWDKESRQAAV 482



 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 6/54 (11%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           C+ C   CPA A++ +   +         R +I+   C   G C  +CP +AI 
Sbjct: 185 CERCVDACPAGALSSQGSEKTGH------RIEINPYLCQGVGTCATSCPTEAIH 232


>gi|326391175|ref|ZP_08212720.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325992808|gb|EGD51255.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 1170

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 40/123 (32%), Gaps = 30/123 (24%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITI----ESGPRCHDGTRR----------- 92
           RG   L       + CI C  C  +CP   I      E   +    T +           
Sbjct: 674 RGIAVLIPEWQ-IDNCIQCNQCSYVCPHAVIRPFLLTEEEMKKAPPTFKLKKAIGRGLEG 732

Query: 93  -TVRYDIDMIKCIYCGLCQEAC--PVDAIVEGP----------NFEFATE-TRQELYYDK 138
              R  +  + C  CG C + C  P  A++  P          N+E+A     ++   DK
Sbjct: 733 LWYRIQVSPLDCTGCGNCADVCPAPTKALIMKPAEEQIEKEARNWEYAVTLDVKDNLVDK 792

Query: 139 ERL 141
             L
Sbjct: 793 TTL 795


>gi|213855566|ref|ZP_03383806.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella
           enterica subsp. enterica serovar Typhi str. M223]
          Length = 88

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 25/65 (38%)

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRN 155
           ++ ++  CI+CG C+E CP  AI     +E A   +++        L N           
Sbjct: 4   WEFNLGHCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRPFAVQ 63

Query: 156 IVTDS 160
              D 
Sbjct: 64  KEIDY 68


>gi|323706136|ref|ZP_08117705.1| Ferredoxin hydrogenase [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534580|gb|EGB24362.1| Ferredoxin hydrogenase [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 504

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110
               ++CI C  C+  CP  AI+    P     + + +  D      I+  KC  CG C 
Sbjct: 131 NIDYDKCIECGRCKDACPYNAISDNLRPCIRSCSAKAITMDEELKAAINYEKCTSCGACT 190

Query: 111 EACPVDAI 118
            ACP  AI
Sbjct: 191 VACPFGAI 198


>gi|319893259|ref|YP_004150134.1| Formate dehydrogenase related protein [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162955|gb|ADV06498.1| Formate dehydrogenase related protein [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323463694|gb|ADX75847.1| formate dehydrogenase, alpha subunit [Staphylococcus
           pseudintermedius ED99]
          Length = 978

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 29/95 (30%), Gaps = 7/95 (7%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
             K        G      Y     +CI C  C  +C    +             R +  +
Sbjct: 126 EYKPKPYEVDFGPF----YRYDPNQCILCGRCVEVCQDVQVNETLSIDWDREHPRVIWDN 181

Query: 98  ---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
              I+   C+ CG C   CP +A++E      A  
Sbjct: 182 DVSINDSSCVGCGQCATVCPCNAMMENNMVGNAGY 216



 Score = 40.5 bits (93), Expect = 0.075,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 18/68 (26%), Gaps = 8/68 (11%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIE----SGPRCHDGTRRTVRYDIDMIKCIY 105
           R     +  C  C      CE         +E                  Y  D  +CI 
Sbjct: 90  RILEKHQLYCTVCDYNNGNCEIHNTMDQWGLEHQTYEYKPKPYEVDFGPFYRYDPNQCIL 149

Query: 106 CGLCQEAC 113
           CG C E C
Sbjct: 150 CGRCVEVC 157


>gi|254171957|ref|ZP_04878633.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermococcus sp. AM4]
 gi|214033853|gb|EEB74679.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermococcus sp. AM4]
          Length = 648

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 28/79 (35%), Gaps = 9/79 (11%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R       Y   E++C  CK+C       AI  ++  +            ID   C  CG
Sbjct: 579 REGKQWPLYQVNEDKCTGCKICINAYGCPAIYWDAEKKKA---------KIDPTMCWGCG 629

Query: 108 LCQEACPVDAIVEGPNFEF 126
            C + CP DA  +    E 
Sbjct: 630 GCAQVCPFDAFEKVREGEL 648


>gi|94448907|emb|CAJ44288.1| NADH dehydrogenase (ubiquinone) [Heliobacillus mobilis]
          Length = 846

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 39/97 (40%), Gaps = 13/97 (13%)

Query: 23  CLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
            LR+F    +  I    EK   +          +Y    E+C  C LC  +CP +AI+  
Sbjct: 756 TLRHFRHEYEAHIK---EKRCPAGVCPALKPKGKYRIDGEKCRRCGLCVKVCPVKAIS-- 810

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                  G  R   + ID   CI CG C + CPV  I
Sbjct: 811 -------GEIRKTPFAIDAKLCIACGACAQKCPVHVI 840


>gi|319644919|ref|ZP_07999152.1| YrhE protein [Bacillus sp. BT1B_CT2]
 gi|317392728|gb|EFV73522.1| YrhE protein [Bacillus sp. BT1B_CT2]
          Length = 979

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 4/89 (4%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+           + +   Y     +CIAC  C  +C    +             R +
Sbjct: 125 KYPYTPKEDPSCAV-DMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWERERPRVI 183

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
             +   I+   C+ CG C   CP +A++E
Sbjct: 184 WDEGVSINESSCVSCGQCVTVCPCNALME 212


>gi|302335002|ref|YP_003800209.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Olsenella uli
           DSM 7084]
 gi|301318842|gb|ADK67329.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Olsenella uli
           DSM 7084]
          Length = 423

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 30/103 (29%), Gaps = 16/103 (15%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            LR        C  C  C   CP  A  ++              + ++   C+ CG C  
Sbjct: 312 ELRVPVCDPTLCTMCGACVTACPPHACDLDERG----------HFSVEPAYCVNCGACAT 361

Query: 112 ACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVR 154
            CP  A+   P         Q+L    E         E +  +
Sbjct: 362 VCPEHALAMEPC------DPQDLVIRDEEAERRRKAAERQRAQ 398



 Score = 34.7 bits (78), Expect = 4.2,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 21/66 (31%), Gaps = 12/66 (18%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           C+ C  +CP  AI I                      C  CGLC   CP +A+       
Sbjct: 69  CRRCLDVCPVDAIEIGESSVRV------------ADGCRKCGLCTMVCPTEALPVQRIMA 116

Query: 126 FATETR 131
            A   +
Sbjct: 117 KALYDK 122


>gi|149374944|ref|ZP_01892717.1| formate dehydrogenase, alpha subunit [Marinobacter algicola DG893]
 gi|149360833|gb|EDM49284.1| formate dehydrogenase, alpha subunit [Marinobacter algicola DG893]
          Length = 956

 Score = 52.0 bits (123), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 4/95 (4%)

Query: 29  KAKTTINYPFEKGSTSPRFRGEHA-LRRYPNGEERCIACKLCEAICP-AQAITIESGPRC 86
           +   T+++   + ST P  RG+ A         + CI C LCE  C   Q   +      
Sbjct: 140 RKTPTVHHVEPRSSTLPHARGQDATHSAMNVNLDACITCGLCERACREVQGNDVIGLAHR 199

Query: 87  HDGTRRTVRYDIDMIK--CIYCGLCQEACPVDAIV 119
              ++    +D  M    C+ CG C +ACP  A++
Sbjct: 200 GAASKVIFDFDDPMGDSTCVACGECVQACPTGALM 234


>gi|327400970|ref|YP_004341809.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
 gi|327316478|gb|AEA47094.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
          Length = 127

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 10/62 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            EE+CI C  C +ICP +AI +    +            I+  KCI+CG C   CPV A+
Sbjct: 75  DEEKCIHCGACISICPVEAIELNGEKKVV----------INASKCIHCGNCVNVCPVKAL 124

Query: 119 VE 120
             
Sbjct: 125 KL 126


>gi|312793902|ref|YP_004026825.1| pyruvate/ketoisovalerate oxidoreductase subunit gamma
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312181042|gb|ADQ41212.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 339

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 8/91 (8%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E+CI C LCE  CP          R  +G  +      D   C  C  C + CP  A+VE
Sbjct: 252 EKCINCGLCETTCPD--YVFVWDRRIENGKLKMFNLGPDYQYCKGCLRCVDICPTGALVE 309

Query: 121 GPNFEFATET---RQEL-YYDKERLLNNGDR 147
           G   E+  E    + +   Y+K     +G++
Sbjct: 310 GIEREYDIEKISAKHDFDIYEKW--YEDGEK 338


>gi|304317218|ref|YP_003852363.1| ferredoxin hydrogenase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
 gi|302778720|gb|ADL69279.1| Ferredoxin hydrogenase [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
          Length = 504

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 6/71 (8%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCG 107
           R+     ++CI C  C+  CP  AI+    P       + +  D      I+  KC  CG
Sbjct: 128 RKSHIDYDKCIECGRCKEACPYNAISDNLRPCIRSCAAKAITMDEELKASINYEKCTSCG 187

Query: 108 LCQEACPVDAI 118
            C  ACP  AI
Sbjct: 188 ACTLACPFGAI 198



 Score = 41.2 bits (95), Expect = 0.042,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 34/103 (33%), Gaps = 20/103 (19%)

Query: 18  GAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIAC--KLCEAICPA 75
                 ++Y  +         E          E    +     E C  C    C  +CP 
Sbjct: 68  KNLKRTMKYAIEG-------EEPVIQVLDIACEECPIKRYRVTEACRGCITHRCTEVCPK 120

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            AI+I                 ID  KCI CG C+EACP +AI
Sbjct: 121 GAISIIDRKSH-----------IDYDKCIECGRCKEACPYNAI 152


>gi|253688410|ref|YP_003017600.1| electron transport complex, RnfABCDGE type, C subunit
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|259494051|sp|C6DH15|RNFC_PECCP RecName: Full=Electron transport complex protein rnfC
 gi|251754988|gb|ACT13064.1| electron transport complex, RnfABCDGE type, C subunit
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 747

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 32/103 (31%), Gaps = 12/103 (11%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ CI C  C   CPA  +  +       G       +  +  CI CG C   CP    
Sbjct: 373 EEQSCIRCSQCADACPAG-LLPQQLYWFSRGQEHEKARNHHLFDCIECGACAYVCP---- 427

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161
               N       RQE    K  +    +  +      +  D+ 
Sbjct: 428 ---SNIPLVQYYRQE----KAEIRAIDEDAQRAAQAKVRFDAK 463


>gi|251777769|ref|ZP_04820689.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
 gi|243082084|gb|EES47974.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
          Length = 412

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 7/94 (7%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           K            +      EE+C+ C  C   C   A                 + +++
Sbjct: 322 KNIIPAEDLDREYIVYPEVDEEKCLGCGRCYISCYDGAHQAIK------WNSEERKPEVN 375

Query: 100 MIKCIYCGLCQEACPVDAIVEGPN-FEFATETRQ 132
             +C+ C LC   CPV AI +G   F+   + R+
Sbjct: 376 KDRCVGCHLCALVCPVTAIGKGEIKFKNNGKERE 409


>gi|187924666|ref|YP_001896308.1| dihydropyrimidine dehydrogenase [Burkholderia phytofirmans PsJN]
 gi|187715860|gb|ACD17084.1| dihydroorotate dehydrogenase family protein [Burkholderia
           phytofirmans PsJN]
          Length = 444

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 8/75 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117
            +++CI C LC   C   A       +          +++   +C+ C LC   CPV   
Sbjct: 341 DQDKCIQCGLCHIACEDTAHQAIMKEKDGV-----RHFEVMDSECVGCNLCMHVCPVEQC 395

Query: 118 IVE--GPNFEFATET 130
           I      N E+A  T
Sbjct: 396 ISMERVDNGEYANWT 410


>gi|54302442|ref|YP_132435.1| putative formate dehydrogenase, alphasubunit [Photobacterium
           profundum SS9]
 gi|46915864|emb|CAG22635.1| putative formate dehydrogenase, alphasubunit [Photobacterium
           profundum SS9]
          Length = 1394

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 10/70 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIE----------SGPRCHDGTRRTVRYDIDMIKCIYCGL 108
              RCI+C  C   C  +A+             S  R          Y +    C+ CG 
Sbjct: 625 DANRCISCGQCVEACNEKAVHGTLSFAKNADGSSASRPECRPGFDKGYSMGDSNCVQCGA 684

Query: 109 CQEACPVDAI 118
           C + CP  A+
Sbjct: 685 CVQVCPTGAL 694



 Score = 35.1 bits (79), Expect = 3.1,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 4/53 (7%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           Y  G+  C+ C  C  +CP  A+  +                I    C YCG+
Sbjct: 672 YSMGDSNCVQCGACVQVCPTGALVDKRDKSQGRIEMLKPVETI----CTYCGV 720



 Score = 34.3 bits (77), Expect = 5.8,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 15/100 (15%)

Query: 62  RCIACKL-----CEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110
           RC+ C       C+    A    +      ++  ++    D       D  +CI CG C 
Sbjct: 577 RCLECGCQANTDCKLRDYATEYDVAETELTNESCQKFHVDDSSEFIVFDANRCISCGQCV 636

Query: 111 EACPVDAIVEG----PNFEFATETRQELYYDKERLLNNGD 146
           EAC   A+        N + ++ +R E     ++  + GD
Sbjct: 637 EACNEKAVHGTLSFAKNADGSSASRPECRPGFDKGYSMGD 676


>gi|300814154|ref|ZP_07094437.1| electron transport complex, RnfABCDGE type, B subunit
           [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300511811|gb|EFK39028.1| electron transport complex, RnfABCDGE type, B subunit
           [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 317

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 32/91 (35%), Gaps = 11/91 (12%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
                  P++  +       +       N    CI+CK+CE  CP  AI +E        
Sbjct: 184 KGIIKLVPYKSKTVVKCMSNDVGKIVRANCNIGCISCKMCEKNCPKDAIHVEDNLA---- 239

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
                   ID  KCI CG C   CP  AI  
Sbjct: 240 -------RIDYEKCINCGKCVSVCPTGAIFC 263



 Score = 33.5 bits (75), Expect = 9.1,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCIYCGLCQEAC 113
            +E+C+AC  C  ICP   I +                  +      I CI C +C++ C
Sbjct: 168 DKEKCVACMKCINICPKGIIKLVPYKSKTVVKCMSNDVGKIVRANCNIGCISCKMCEKNC 227

Query: 114 PVDAIVEGPN 123
           P DAI    N
Sbjct: 228 PKDAIHVEDN 237


>gi|282882923|ref|ZP_06291528.1| electron transport complex, rnfaBcdge type, b subunit
           [Peptoniphilus lacrimalis 315-B]
 gi|281297334|gb|EFA89825.1| electron transport complex, rnfaBcdge type, b subunit
           [Peptoniphilus lacrimalis 315-B]
          Length = 317

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 32/91 (35%), Gaps = 11/91 (12%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
                  P++  +       +       N    CI+CK+CE  CP  AI +E        
Sbjct: 184 KGIIKLVPYKSKTVVKCMSNDVGKIVRANCNIGCISCKMCEKNCPKDAIHVEDNLA---- 239

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
                   ID  KCI CG C   CP  AI  
Sbjct: 240 -------RIDYEKCINCGKCVSVCPTGAIFC 263



 Score = 33.5 bits (75), Expect = 9.0,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCIYCGLCQEAC 113
            +E+C+AC  C  ICP   I +                  +      I CI C +C++ C
Sbjct: 168 DKEKCVACMKCINICPKGIIKLVPYKSKTVVKCMSNDVGKIVRANCNIGCISCKMCEKNC 227

Query: 114 PVDAIVEGPN 123
           P DAI    N
Sbjct: 228 PKDAIHVEDN 237


>gi|255502232|gb|ACU11597.1| HfsD [Thermoanaerobacterium saccharolyticum]
          Length = 495

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110
               ++CI C  C+  CP  AI+    P     + + +  D      I+  KC  CG C 
Sbjct: 122 NIDYDKCIECGRCKDACPYNAISDNLRPCIRSCSAKAITMDEELKAAINYEKCTSCGACT 181

Query: 111 EACPVDAI 118
            ACP  AI
Sbjct: 182 LACPFGAI 189


>gi|297620125|ref|YP_003708230.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus voltae A3]
 gi|297379102|gb|ADI37257.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           voltae A3]
          Length = 419

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 40/113 (35%), Gaps = 14/113 (12%)

Query: 9   SFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKL 68
           S  +L EFV       + + K         E      R+R    +    +  + CI+C  
Sbjct: 4   SIWYLYEFVR------KKWLKRFANAKTEKEAYVPPERYR---RIPVSIDQPDNCISCNG 54

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           C   CP++AI ++                     CI CG C E CP   + +G
Sbjct: 55  CYQSCPSEAIEMQYSEEYGKNLPVF-----FPGSCIACGNCVETCPTGVLEQG 102



 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 12/79 (15%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             +  Y   +E C+ C  C  ICP  AIT E+             Y I    C+ C  C 
Sbjct: 116 PKINNYIIDDELCVKCDSCRRICPVNAITYENN-----------VYRIKSNDCVGCNRCA 164

Query: 111 EACPV-DAIVEGPNFEFAT 128
            ACPV +AI     +E + 
Sbjct: 165 TACPVENAIKSYNEYELSE 183



 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 10/68 (14%)

Query: 54  RRYPNGEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
             Y   E++CI C++C   C    AI+I S               I+   C+ CGLC   
Sbjct: 310 NCYIINEDKCIGCRICSKACNVENAISISSETNMPY---------INPDYCVRCGLCHRE 360

Query: 113 CPVDAIVE 120
           CPVDAI  
Sbjct: 361 CPVDAIDF 368



 Score = 42.4 bits (98), Expect = 0.018,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 4/65 (6%)

Query: 63  CIACKLCEAICPAQAITI----ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           CIAC  C   CP   +      +   +      +   Y ID   C+ C  C+  CPV+AI
Sbjct: 84  CIACGNCVETCPTGVLEQGTLRKEAKQYIWTVPKINNYIIDDELCVKCDSCRRICPVNAI 143

Query: 119 VEGPN 123
               N
Sbjct: 144 TYENN 148



 Score = 39.3 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 16/60 (26%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C  C  +CP                 +    ++++++C+ CGLC E CP  AI  G 
Sbjct: 257 CIKCNNCVDVCP----------------GKIDLNELNVLECVKCGLCIEVCPTTAIRTGK 300



 Score = 34.3 bits (77), Expect = 6.5,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 21/53 (39%)

Query: 74  PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
            A A T +      +  RR          CI C  C ++CP +AI    + E+
Sbjct: 20  FANAKTEKEAYVPPERYRRIPVSIDQPDNCISCNGCYQSCPSEAIEMQYSEEY 72


>gi|312877401|ref|ZP_07737366.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311795875|gb|EFR12239.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 339

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 8/91 (8%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E+CI C LCE  CP          R  +G  +      D   C  C  C + CP  A+VE
Sbjct: 252 EKCINCGLCETTCPD--YVFVWDRRIENGKLKMFNLGPDYQYCKGCLRCVDICPTGALVE 309

Query: 121 GPNFEFATET---RQEL-YYDKERLLNNGDR 147
           G   E+  E    + +   Y+K     +G++
Sbjct: 310 GIEREYDIEKISAKHDFDIYEKW--YEDGEK 338


>gi|291165831|gb|EFE27878.1| Fe-hydrogenase large subunit family protein [Filifactor alocis ATCC
           35896]
          Length = 498

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQ 110
              +E+CI C  C+  CP  AI     P          G+    R  ID  KC+ CG C 
Sbjct: 145 HIDKEKCIKCGKCKEACPYNAIIQYDRPCAEACGVNAIGSDEYGRALIDHDKCVSCGQCM 204

Query: 111 EACPVDAI 118
             CP  AI
Sbjct: 205 AHCPFGAI 212



 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 32/92 (34%), Gaps = 13/92 (14%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACK--LCEAICPAQAITIESGPRCHDGT 90
           T             F       +       C  C    C  +CP  AIT+          
Sbjct: 90  TERVYEAPLVNVIPFACNACPTKALEVTSTCRQCMAHPCIQVCPVGAITMGE-------- 141

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
               +  ID  KCI CG C+EACP +AI++  
Sbjct: 142 ---TQTHIDKEKCIKCGKCKEACPYNAIIQYD 170


>gi|288919210|ref|ZP_06413547.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Frankia sp. EUN1f]
 gi|288349380|gb|EFC83620.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Frankia sp. EUN1f]
          Length = 1175

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 27/81 (33%), Gaps = 16/81 (19%)

Query: 58  NGEERCIACKLCEAICPAQAITI----------------ESGPRCHDGTRRTVRYDIDMI 101
              E C++C  C  +CP  AI +                 + P+        +   +   
Sbjct: 682 WDAELCVSCGKCAIVCPHAAIRMTLFDPARLADAPATFRHTRPKDPRLGDYRLTIQVAPD 741

Query: 102 KCIYCGLCQEACPVDAIVEGP 122
            C  CG+C EACP  +     
Sbjct: 742 DCTGCGVCVEACPAKSREMPD 762


>gi|149920708|ref|ZP_01909173.1| putative carbamoyl transferase [Plesiocystis pacifica SIR-1]
 gi|149818495|gb|EDM77944.1| putative carbamoyl transferase [Plesiocystis pacifica SIR-1]
          Length = 1178

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 31/85 (36%), Gaps = 12/85 (14%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           +  T        A        ERC  C +CE +CP   +     PR            ++
Sbjct: 232 RRPTVASLHRAKADAPVRVDPERCDGCGVCERLCPVDFLDGLGQPRAG----------LE 281

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNF 124
              CI C +C EACP DA    P +
Sbjct: 282 PDACIRCQVCVEACPTDA--MRPVY 304


>gi|302670217|ref|YP_003830177.1| iron-only hydrogenase [Butyrivibrio proteoclasticus B316]
 gi|302394690|gb|ADL33595.1| iron-only hydrogenase [Butyrivibrio proteoclasticus B316]
          Length = 490

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 26/71 (36%), Gaps = 6/71 (8%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCG 107
                   +C  C  C A CP  AI     P         + YD      ID  KCI CG
Sbjct: 124 THMHIDPAKCKECGKCAAACPYSAIVHLERPCKKACPVGAITYDEYGYCKIDEDKCIQCG 183

Query: 108 LCQEACPVDAI 118
            C  +CP  AI
Sbjct: 184 HCIHSCPFAAI 194


>gi|78223444|ref|YP_385191.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Geobacter
           metallireducens GS-15]
 gi|78194699|gb|ABB32466.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Geobacter
           metallireducens GS-15]
          Length = 371

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 27/62 (43%), Gaps = 11/62 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            + RCIAC LC   CP + +T   GP             I   KCI CGLC   CP  AI
Sbjct: 295 EQARCIACGLCAKRCPVRGVTSIMGPLH-----------ISEEKCIGCGLCVTTCPTQAI 343

Query: 119 VE 120
             
Sbjct: 344 SL 345


>gi|251789757|ref|YP_003004478.1| RnfABCDGE type electron transport complex subunit C [Dickeya zeae
           Ech1591]
 gi|247538378|gb|ACT06999.1| electron transport complex, RnfABCDGE type, C subunit [Dickeya zeae
           Ech1591]
          Length = 673

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 34/105 (32%), Gaps = 3/105 (2%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ CI C  C   CPA  +  +       G          +  CI CG C   CP   I
Sbjct: 374 EEQGCIRCGKCADACPAG-LLPQQLYWFSRGQEHEKARQHHLFDCIECGACAYVCP-SNI 431

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
                +       Q L  +  +      R+++   R +  +   R
Sbjct: 432 PLVQYYRQEKAEIQTLDLESRKAAEAKARFDARQAR-LAKEKQAR 475


>gi|325610412|gb|ADZ36376.1| NADH dehydrogenase 18 kDa subunit [Lysimachia christinae]
          Length = 111

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 5/87 (5%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F + L +  +   TI YP+EK  TS RFRG            +CIAC++C  +CP 
Sbjct: 22  IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIK 102
               ++         +R + Y ID   
Sbjct: 77  DLPVVDWKFEPDIRKKRLLNYSIDFWN 103


>gi|291519873|emb|CBK75094.1| Iron only hydrogenase large subunit, C-terminal domain
           [Butyrivibrio fibrisolvens 16/4]
          Length = 492

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 29/71 (40%), Gaps = 6/71 (8%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCG 107
           RR      +C  C +C   CP QAI     P         + YD      ID  KCI CG
Sbjct: 124 RRMHIDPTKCKECGMCAKECPYQAIVHLERPCKKACPVGAISYDEYGHCVIDDEKCISCG 183

Query: 108 LCQEACPVDAI 118
            C  +CP  AI
Sbjct: 184 HCIHSCPFGAI 194


>gi|262203739|ref|YP_003274947.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Gordonia bronchialis DSM 43247]
 gi|262087086|gb|ACY23054.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Gordonia
           bronchialis DSM 43247]
          Length = 559

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 24/71 (33%), Gaps = 3/71 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                   C     C A+CP   I                   ID   CI CG C + CP
Sbjct: 1   MAHVITRPCCNDASCVAVCPVNCIHPTPDEPE---FFTAESLYIDPETCIDCGACIDECP 57

Query: 115 VDAIVEGPNFE 125
           V+AI+   + E
Sbjct: 58  VEAIIPDDSLE 68


>gi|257066859|ref|YP_003153115.1| hydrogenase large subunit domain-containing protein [Anaerococcus
           prevotii DSM 20548]
 gi|256798739|gb|ACV29394.1| hydrogenase large subunit domain protein [Anaerococcus prevotii DSM
           20548]
          Length = 508

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 6/66 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV------RYDIDMIKCIYCGLCQEA 112
            +++CI C  C A CP QAI  +  P       + +      R  ID  KC+ CG C   
Sbjct: 146 DQDKCIKCGKCVAACPYQAINHQKRPCAESCGVKAIGSDELGRAKIDEDKCVACGRCIIT 205

Query: 113 CPVDAI 118
           CP  AI
Sbjct: 206 CPFGAI 211



 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 23/65 (35%), Gaps = 5/65 (7%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-----IDMIKCIYCGLCQEACPVDA 117
           C AC   +     Q       P  +   +  V Y      ID  KCI CG C  ACP  A
Sbjct: 105 CEACPENKVTVTDQCHACIGHPCVNVCPKNAVTYTAKGAIIDQDKCIKCGKCVAACPYQA 164

Query: 118 IVEGP 122
           I    
Sbjct: 165 INHQK 169


>gi|254168196|ref|ZP_04875043.1| 2-oxoacid:acceptor oxidoreductase, delta subunit,
           pyruvate/2-ketoisovalerate family [Aciduliprofundum
           boonei T469]
 gi|197622962|gb|EDY35530.1| 2-oxoacid:acceptor oxidoreductase, delta subunit,
           pyruvate/2-ketoisovalerate family [Aciduliprofundum
           boonei T469]
          Length = 108

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 3/90 (3%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGT 90
              P  K  ++    G     R     ++CI C +C   CP  AI     E+     +  
Sbjct: 8   EPTPIAKVPSTENKTGGWRTFRPIIHYDKCIRCYICWKFCPDTAIYFASPEAHEAPKEAL 67

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            +    +I+   C  CG+C   CP  AI  
Sbjct: 68  AKFDTVEINYDFCKGCGICANECPTKAIEL 97


>gi|254425853|ref|ZP_05039570.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Synechococcus sp.
           PCC 7335]
 gi|196188276|gb|EDX83241.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Synechococcus sp.
           PCC 7335]
          Length = 1256

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 29/102 (28%), Gaps = 26/102 (25%)

Query: 58  NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRYDIDMIKC 103
              E C+ C  C  +CP               +A          +   +     +    C
Sbjct: 708 WDPEVCVQCAKCVMVCPHSVIRAKAYDPSLLRKAPKTFLHTEAREWEGKAFTLQVAAEDC 767

Query: 104 IYCGLCQEACPV--------DAIVEGPNFEFATE----TRQE 133
             CG+C + CP          AI   P ++ +       R +
Sbjct: 768 TGCGICVDVCPAKNKAVPRLKAINMTPVYQPSQTEALDNRAD 809


>gi|149908969|ref|ZP_01897628.1| putative formate dehydrogenase, alphasubunit [Moritella sp. PE36]
 gi|149807980|gb|EDM67923.1| putative formate dehydrogenase, alphasubunit [Moritella sp. PE36]
          Length = 1383

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 10/75 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIE----------SGPRCHDGTRRTVRYDIDMIKCIYCGL 108
              RCI+C  C   C  QA+             S  R          + +    C+ CG 
Sbjct: 616 DANRCISCGQCVDACNEQAVHGVLSFMKNDDGASASRPECRPGFENGFSMGDSNCVQCGR 675

Query: 109 CQEACPVDAIVEGPN 123
           C + CP  A+V+  +
Sbjct: 676 CVQVCPTGALVDSRD 690


>gi|319936847|ref|ZP_08011259.1| 4Fe-4S ferredoxin [Coprobacillus sp. 29_1]
 gi|319808115|gb|EFW04687.1| 4Fe-4S ferredoxin [Coprobacillus sp. 29_1]
          Length = 366

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 11/64 (17%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           ++ CI C  C  IC   A TI                 I+  KC+ CG C   CP DAI 
Sbjct: 192 QDLCIGCGQCIKICAHDAPTITDHKAS-----------INHDKCVGCGRCIGVCPKDAIK 240

Query: 120 EGPN 123
              +
Sbjct: 241 ASMD 244


>gi|269139848|ref|YP_003296549.1| pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin
           oxidoreductase, alpha subunit [Edwardsiella tarda
           EIB202]
 gi|267985509|gb|ACY85338.1| pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin
           oxidoreductase, alpha subunit [Edwardsiella tarda
           EIB202]
 gi|304559687|gb|ADM42351.1| Pyruvate-flavodoxin oxidoreductase [Edwardsiella tarda FL6-60]
          Length = 1193

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 24/83 (28%), Gaps = 16/83 (19%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVR 95
             AL       + CI C  C  +CP                A                 R
Sbjct: 683 NIALEIPAWRPDLCIQCGNCAFVCPHAAIRAKFYHQDLLDGAPQDFRSAPISARGFPETR 742

Query: 96  Y--DIDMIKCIYCGLCQEACPVD 116
           Y   +    C  CGLC EACPV 
Sbjct: 743 YTLQVYPEDCTGCGLCVEACPVR 765



 Score = 37.4 bits (85), Expect = 0.62,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 9/19 (47%)

Query: 100 MIKCIYCGLCQEACPVDAI 118
              CI CG C   CP  AI
Sbjct: 693 PDLCIQCGNCAFVCPHAAI 711


>gi|167760379|ref|ZP_02432506.1| hypothetical protein CLOSCI_02753 [Clostridium scindens ATCC 35704]
 gi|167662052|gb|EDS06182.1| hypothetical protein CLOSCI_02753 [Clostridium scindens ATCC 35704]
          Length = 382

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 23/67 (34%), Gaps = 11/67 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               E CI C  C  +C   A  I                 ID  KC+ CG C   CP D
Sbjct: 205 YVEVENCIGCGNCIRVCAHDAPKITDRKAF-----------IDHDKCVGCGRCIGVCPKD 253

Query: 117 AIVEGPN 123
           A+    +
Sbjct: 254 AVCPPND 260


>gi|294678050|ref|YP_003578665.1| dihydropyrimidine dehydrogenase [Rhodobacter capsulatus SB 1003]
 gi|294476870|gb|ADE86258.1| dihydropyrimidine dehydrogenase (NADP(+)) [Rhodobacter capsulatus
           SB 1003]
          Length = 433

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 30/110 (27%), Gaps = 14/110 (12%)

Query: 15  EFVGAFFLCLRYFFKAKTTINYPFEKGSTSP----RFRGEHALRRYPNGEERCIACKLCE 70
           E +        Y  +   T        +       ++   +   +    ++ CI C  C 
Sbjct: 298 EMISGLS---DYMDRKGLTETREIVGRAVPKVTDWQYLNLNYTTKASIAQDDCIKCGRCH 354

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            +C       E                +   +C+ C LC E CP   I  
Sbjct: 355 IVC-------EDTSHQAIAMAADRTVTVKEEECVACNLCVEVCPTKCITM 397


>gi|255527174|ref|ZP_05394059.1| nitroreductase [Clostridium carboxidivorans P7]
 gi|296186117|ref|ZP_06854522.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
 gi|255509129|gb|EET85484.1| nitroreductase [Clostridium carboxidivorans P7]
 gi|296049385|gb|EFG88814.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
          Length = 273

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 16/108 (14%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 E+CI C  C   C  + I + +G              I+   CI CG C   CP
Sbjct: 1   MMNVNTEKCIGCGECIKDCFIRDIEMVNGKA-----------KINNKTCIKCGHCIAICP 49

Query: 115 VDAIVEGPNF---EFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
            +A+     +   E    T++E   D + LL N  ++   + +    +
Sbjct: 50  KNAVS-TDEYDMKEVKEFTKEEFLIDPDNLL-NFIKFRRTVRQFKDKE 95


>gi|163731475|ref|ZP_02138922.1| iron-sulfur cluster-binding protein, putative [Roseobacter
           litoralis Och 149]
 gi|161394929|gb|EDQ19251.1| iron-sulfur cluster-binding protein, putative [Roseobacter
           litoralis Och 149]
          Length = 678

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 28/93 (30%), Gaps = 14/93 (15%)

Query: 37  PF-EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
           P  E             L       + C  C  C ++CP+ A+                +
Sbjct: 507 PEAEVLELPDAAPYGAILV----DTDACTLCLSCVSLCPSGALGDNPD---------NPQ 553

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
                  C+ CGLC   CP  AI   P F+   
Sbjct: 554 LRFQEDACLQCGLCSNICPEQAITLKPQFDLTD 586



 Score = 37.8 bits (86), Expect = 0.47,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 11/53 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C  +CP  AIT                  ID + C  CG C   CP  AI
Sbjct: 306 CTKCLDVCPTGAITSAGD-----------HVAIDPLICAGCGACSALCPSGAI 347


>gi|330829269|ref|YP_004392221.1| anaerobic sulfite reductase subunit C [Aeromonas veronii B565]
 gi|328804405|gb|AEB49604.1| Anaerobic sulfite reductase subunit C [Aeromonas veronii B565]
          Length = 336

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 28/93 (30%), Gaps = 8/93 (8%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
                  P +    +    G   + +     ERCI C  C   C   A+   +       
Sbjct: 147 KMVIAGCPNDCAKANMADFGILGIAKIHFNAERCIGCGACVKACNHHAVDCLAIKHGKAV 206

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                    +  KCI CG C  ACP  A    P
Sbjct: 207 K--------EESKCIGCGECVLACPTLAWQRDP 231


>gi|304397718|ref|ZP_07379595.1| electron transport complex, RnfABCDGE type, C subunit [Pantoea sp.
           aB]
 gi|304354890|gb|EFM19260.1| electron transport complex, RnfABCDGE type, C subunit [Pantoea sp.
           aB]
          Length = 947

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 3/110 (2%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
               + E+ CI C  C   CPA+ +  +       G          +  CI CG C   C
Sbjct: 368 MGNNDEEQSCIRCSACADACPAK-LLPQQLYWFSQGGDHDKARSHHIDDCIECGACAYVC 426

Query: 114 PVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           P   I     +       + +  + +R L    R+E+   R +  +   R
Sbjct: 427 P-SNIPLVQYYRQEKAELRAIDLEAKRTLEAKARFEARQAR-LEREKQAR 474


>gi|229020831|ref|ZP_04177540.1| formate dehydrogenase [Bacillus cereus AH1273]
 gi|229027420|ref|ZP_04183668.1| formate dehydrogenase [Bacillus cereus AH1272]
 gi|228733881|gb|EEL84627.1| formate dehydrogenase [Bacillus cereus AH1272]
 gi|228740456|gb|EEL90745.1| formate dehydrogenase [Bacillus cereus AH1273]
          Length = 975

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+E          + +   Y     +CIAC  C  +C    +             R
Sbjct: 119 HQKYPYE--PKVDASEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 176

Query: 93  TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120
            +     DI+   C+ CG C   CP +A++E
Sbjct: 177 VIWDEGVDINDSSCVSCGQCVTICPCNALME 207



 Score = 40.1 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 87  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDASEVDMSHPFYRYDPNQ 146

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 147 CIACGQCVEVC 157


>gi|229132574|ref|ZP_04261423.1| formate dehydrogenase [Bacillus cereus BDRD-ST196]
 gi|228650920|gb|EEL06906.1| formate dehydrogenase [Bacillus cereus BDRD-ST196]
          Length = 978

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+E          + +   Y     +CIAC  C  +C    +             R
Sbjct: 119 HQKYPYE--PKVDASEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 176

Query: 93  TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120
            +     DI+   C+ CG C   CP +A++E
Sbjct: 177 VIWDEGVDINDSSCVSCGQCVTICPCNALME 207



 Score = 40.1 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 87  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDASEVDMSHPFYRYDPNQ 146

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 147 CIACGQCVEVC 157


>gi|161870852|ref|YP_001600026.1| ferredoxin, 4Fe-4S type [Neisseria meningitidis 053442]
 gi|161596405|gb|ABX74065.1| ferredoxin, 4Fe-4S bacterial type [Neisseria meningitidis 053442]
          Length = 279

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C  +CPA AI               + + +   +C  CGLC   CPVD I
Sbjct: 75  DETACIGCTACIRVCPADAIMGAGK----------LMHTVIADECTGCGLCVAPCPVDCI 124

Query: 119 VEGP 122
              P
Sbjct: 125 HMQP 128



 Score = 35.5 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 12/23 (52%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIV 119
            ID   CI C  C   CP DAI+
Sbjct: 73  RIDETACIGCTACIRVCPADAIM 95


>gi|146304360|ref|YP_001191676.1| thiamine pyrophosphate binding domain-containing protein
           [Metallosphaera sedula DSM 5348]
 gi|145702610|gb|ABP95752.1| thiamine pyrophosphate enzyme domain protein TPP-binding protein
           [Metallosphaera sedula DSM 5348]
          Length = 607

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 22/65 (33%), Gaps = 10/65 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++C  C +C       AI   S  +            I+   CI CG C   CP +AI
Sbjct: 542 NYDKCTGCTICYDYFTCPAILKRSDKKAV----------INPQDCIGCGACVPVCPFNAI 591

Query: 119 VEGPN 123
                
Sbjct: 592 KLEGE 596


>gi|317500246|ref|ZP_07958476.1| Fe-hydrogenase large subunit family protein [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|331087521|ref|ZP_08336454.1| hypothetical protein HMPREF1025_00037 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316898372|gb|EFV20413.1| Fe-hydrogenase large subunit family protein [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|330404066|gb|EGG83615.1| hypothetical protein HMPREF1025_00037 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 503

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 7/78 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQ 110
              +E+CI C  C+++CP  AI  +  P             +  R  ID  KC+ CG+C 
Sbjct: 148 YIDQEKCIKCGKCKSVCPYDAIAKKERPCQKACGVNAIKSDKMGRAYIDNEKCVSCGMCM 207

Query: 111 EACPVDAI-VEGPNFEFA 127
            +CP  AI  +   F+ A
Sbjct: 208 VSCPFGAISDKSQIFQLA 225



 Score = 40.9 bits (94), Expect = 0.054,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 13/64 (20%)

Query: 57  PNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 C  C    C+ +CP  AI++ +G           R  ID  KCI CG C+  CP
Sbjct: 117 YEVSNICKGCLAHPCQEVCPKDAISMVNG-----------RSYIDQEKCIKCGKCKSVCP 165

Query: 115 VDAI 118
            DAI
Sbjct: 166 YDAI 169


>gi|126460373|ref|YP_001056651.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Pyrobaculum calidifontis JCM 11548]
 gi|126250094|gb|ABO09185.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Pyrobaculum calidifontis JCM 11548]
          Length = 83

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 10/68 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++CI C LC   CP   I  E G +            ID   C  CG+C + CPV AI
Sbjct: 26  NLQKCIDCGLCWLYCPESVIDWEKGQKV----------TIDYTFCKGCGICADVCPVKAI 75

Query: 119 VEGPNFEF 126
              P  E 
Sbjct: 76  DMVPEGEL 83


>gi|332296822|ref|YP_004438744.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Treponema brennaborense DSM 12168]
 gi|332179925|gb|AEE15613.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Treponema brennaborense DSM 12168]
          Length = 370

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 11/65 (16%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           +E C+ C +C   C   AITIE+               I+  KC+ CG C  ACP DA+ 
Sbjct: 196 QEACVGCGMCRKNCAHGAITIEAKKAS-----------INHDKCVGCGRCIGACPKDAVH 244

Query: 120 EGPNF 124
            G + 
Sbjct: 245 PGADH 249


>gi|330446092|ref|ZP_08309744.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490283|dbj|GAA04241.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 549

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/101 (16%), Positives = 24/101 (23%), Gaps = 2/101 (1%)

Query: 29  KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88
           +         E+            + +      RC +C  C                   
Sbjct: 448 RNPINEVAVAERVKDFTEVVQGLTMDQAVYEATRCYSCGNC--FECDGCYGACPEQGAII 505

Query: 89  GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
              +  RY  D  KC  C  C   CP  AI   P  +    
Sbjct: 506 KLGKGNRYKFDYEKCTGCQACVNQCPCHAIAMSPVSDIPFT 546


>gi|237740168|ref|ZP_04570649.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. 2_1_31]
 gi|229422185|gb|EEO37232.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. 2_1_31]
          Length = 1189

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 21/131 (16%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-------------QAITIESGP 84
           FE G+ +   RG        N  ++CI C  C  +CP              +A  +E   
Sbjct: 676 FENGTAAFEKRGVAVDVPIWN-IDKCIQCNQCSYVCPHAVIRPFLINEEELKASPVELAT 734

Query: 85  RCHDGTRRT---VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERL 141
           +   G        R  +  + C+ CG C   CP  A+   P  + +   ++++   K   
Sbjct: 735 KKPTGKGLDGLAYRIQVSTLDCVGCGSCAHVCPAKALDMMPIAD-SLNDKEDI---KADY 790

Query: 142 LNNGDRWESEI 152
           L N  ++ S++
Sbjct: 791 LFNNVKYRSDL 801


>gi|189220397|ref|YP_001941037.1| Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin
           oxidoreductase, beta subunit [Methylacidiphilum
           infernorum V4]
 gi|189187255|gb|ACD84440.1| Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin
           oxidoreductase, beta subunit [Methylacidiphilum
           infernorum V4]
          Length = 1182

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 33/130 (25%), Gaps = 26/130 (20%)

Query: 29  KAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAICPAQ---AITIES- 82
           K   +   P+    T  S   +   +L         CI C  C   CP     A   E  
Sbjct: 661 KLPVSSFSPYGAFPTATSRWEKRNISLEVPLWEPSLCIQCGQCIMACPHGVIRAKVYEPS 720

Query: 83  --GPRCHDGTRRTVRYDIDMI----------KCIYCGLCQEACP--------VDAIVEGP 122
                     +   RY                C  C LC E CP          AI    
Sbjct: 721 CLEKAPEGFLKAQARYPQWEGLFYSIAVSEADCTGCALCVEVCPAFDKYQPAKKAINMTM 780

Query: 123 NFEFATETRQ 132
             +   E R+
Sbjct: 781 RRDLFEELRK 790


>gi|82523792|emb|CAI78535.1| pyruvate oxidoreductase [uncultured Chloroflexi bacterium]
          Length = 1181

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 27/92 (29%), Gaps = 16/92 (17%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPR 85
              T+   +   AL       + CI C  C  +CP                A       +
Sbjct: 666 PTGTTQWEKRNIALEIPEWVPDLCIMCGKCVFVCPHAVIRAKVYEPQYLENAPETFKSRK 725

Query: 86  CHDGTRRTVRY--DIDMIKCIYCGLCQEACPV 115
            +        Y   +    C  C LC EACPV
Sbjct: 726 ANWKEFPDTLYSLQVAPEDCTGCALCVEACPV 757



 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 1/27 (3%)

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEF 126
              CI CG C   CP  A++    +E 
Sbjct: 686 PDLCIMCGKCVFVCP-HAVIRAKVYEP 711


>gi|305666200|ref|YP_003862487.1| ferredoxin (flavodoxin) oxidoreductase [Maribacter sp. HTCC2170]
 gi|88708191|gb|EAR00428.1| ferredoxin (flavodoxin) oxidoreductase [Maribacter sp. HTCC2170]
          Length = 1176

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/130 (21%), Positives = 37/130 (28%), Gaps = 40/130 (30%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIE------------------SGPRCHDG 89
           RG        +GEE C  C  C  ICP  AI  +                  +  R  + 
Sbjct: 676 RGIADKVPVWDGEEICTQCNKCVVICPHAAIRAKVVSNGELANAPSTLKSVPAKGRPFNK 735

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACP--------VDAIVEG----------PNFEF----A 127
              +    +    C  C LC E CP          AI             PN+++     
Sbjct: 736 EEESYVLQVSPQDCTGCDLCVEVCPAVSKEDPDFKAINMHSKLKVEGAEDPNWDYFIDLP 795

Query: 128 TETRQELYYD 137
              R EL   
Sbjct: 796 DYDRTELNIT 805


>gi|257452670|ref|ZP_05617969.1| NAD-reducing iron-only hydrogenase large subunit [Fusobacterium sp.
           3_1_5R]
 gi|317059210|ref|ZP_07923695.1| iron hydrogenase 1 [Fusobacterium sp. 3_1_5R]
 gi|313684886|gb|EFS21721.1| iron hydrogenase 1 [Fusobacterium sp. 3_1_5R]
          Length = 567

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 59  GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQEACPV 115
              +CI C+ CE+IC   Q+  I +G R          +   +   +C +CG C   CP 
Sbjct: 146 DVTKCIMCRRCESICRDIQSCNILTGVRRGFSAVVDTAFSRSLQHTRCTFCGQCVSVCPT 205

Query: 116 DAIVEGPN 123
            AI E  N
Sbjct: 206 GAIYETDN 213


>gi|153814717|ref|ZP_01967385.1| hypothetical protein RUMTOR_00932 [Ruminococcus torques ATCC 27756]
 gi|145847748|gb|EDK24666.1| hypothetical protein RUMTOR_00932 [Ruminococcus torques ATCC 27756]
          Length = 503

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 7/78 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQ 110
              +E+CI C  C+++CP  AI  +  P             +  R  ID  KC+ CG+C 
Sbjct: 148 YIDQEKCIKCGKCKSVCPYDAIAKKERPCQKACGVNAIKSDKMGRAYIDNEKCVSCGMCM 207

Query: 111 EACPVDAI-VEGPNFEFA 127
            +CP  AI  +   F+ A
Sbjct: 208 VSCPFGAISDKSQIFQLA 225



 Score = 40.9 bits (94), Expect = 0.056,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 13/64 (20%)

Query: 57  PNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 C  C    C+ +CP  AI++ +G           R  ID  KCI CG C+  CP
Sbjct: 117 YEVSNICKGCLAHPCQEVCPKDAISMVNG-----------RSYIDQEKCIKCGKCKSVCP 165

Query: 115 VDAI 118
            DAI
Sbjct: 166 YDAI 169


>gi|302343180|ref|YP_003807709.1| electron transport complex, RnfABCDGE type, C subunit
           [Desulfarculus baarsii DSM 2075]
 gi|301639793|gb|ADK85115.1| electron transport complex, RnfABCDGE type, C subunit
           [Desulfarculus baarsii DSM 2075]
          Length = 454

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           E CI C  C  +CP   I  E G  C  G       D D++ CI CG C   CP
Sbjct: 380 EPCIHCGRCVQVCPVNLIPAELGKMCQYGH-YEEAADKDLMHCIECGCCAYVCP 432



 Score = 38.2 bits (87), Expect = 0.40,   Method: Composition-based stats.
 Identities = 9/17 (52%), Positives = 12/17 (70%)

Query: 103 CIYCGLCQEACPVDAIV 119
           CI+CG C + CPV+ I 
Sbjct: 382 CIHCGRCVQVCPVNLIP 398


>gi|257066535|ref|YP_003152791.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Anaerococcus
           prevotii DSM 20548]
 gi|256798415|gb|ACV29070.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Anaerococcus
           prevotii DSM 20548]
          Length = 1175

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/117 (24%), Positives = 40/117 (34%), Gaps = 20/117 (17%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESG 83
           FE G+T    RG  AL       + CI C  C  +CP                A      
Sbjct: 665 FESGTTQYEKRG-IALNVPEWQLDNCIQCNQCSYVCPHAVIRPFLVTEEEKANAPEGFDT 723

Query: 84  PRCHDGTRRTVRYDID--MIKCIYCGLCQEAC--PVDAIVEGPNFEFATETRQELYY 136
            +          + I    + C  CG C + C  P  A++  P FE   E  +E +Y
Sbjct: 724 KKAIGKGMEGYEFRIQVSPLDCTGCGNCADVCPAPEKALLMKP-FEDEVEKEKENWY 779


>gi|160902062|ref|YP_001567643.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Petrotoga mobilis SJ95]
 gi|160359706|gb|ABX31320.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Petrotoga mobilis SJ95]
          Length = 100

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 6/78 (7%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           GE  ++R     E+C  C  C   CP  AI+           ++    ++++  C  CG+
Sbjct: 28  GEWRIQRPIIDREKCTNCMQCWLYCPDMAIS------GGLDGKKMKLGEVNLDYCKGCGV 81

Query: 109 CQEACPVDAIVEGPNFEF 126
           C   CPV+AI   P  EF
Sbjct: 82  CAAVCPVNAIEMKPESEF 99


>gi|325203327|gb|ADY98780.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
           M01-240355]
          Length = 279

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 10/66 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C  C   CPA AI               + + +   +C  CGLC   CPVD
Sbjct: 73  QIDETACIGCTACIRACPADAIMGAGK----------LMHTVIADECTGCGLCVAPCPVD 122

Query: 117 AIVEGP 122
            I   P
Sbjct: 123 CIHMQP 128


>gi|310659325|ref|YP_003937046.1| cobyrinic acid a,c-diamide synthase [Clostridium sticklandii DSM
           519]
 gi|308826103|emb|CBH22141.1| Cobyrinic acid a,c-diamide synthase [Clostridium sticklandii]
          Length = 295

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 12/74 (16%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
            + + +     E+CI C LC   C   AI  ES             Y ++   C  C LC
Sbjct: 56  YYGMNKAVIDSEKCINCGLCMEKCRFDAIENESD------------YKVNPFACEGCSLC 103

Query: 110 QEACPVDAIVEGPN 123
           +  CPV+AI+   +
Sbjct: 104 EYVCPVNAIIMNKD 117



 Score = 37.4 bits (85), Expect = 0.66,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 20/46 (43%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
             ++  +         +  ID  KCI CGLC E C  DAI    ++
Sbjct: 45  MHQNTDKISSNYYGMNKAVIDSEKCINCGLCMEKCRFDAIENESDY 90


>gi|302392276|ref|YP_003828096.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acetohalobium
           arabaticum DSM 5501]
 gi|302204353|gb|ADL13031.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acetohalobium
           arabaticum DSM 5501]
          Length = 369

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 28/75 (37%), Gaps = 14/75 (18%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
            HA+      EE CI C  C   CP  A  I+   R                KCI CG C
Sbjct: 182 MHAVVTPEVEEEECITCGECSDWCPEDAFEIDEVSRLD------------EEKCIGCGEC 229

Query: 110 QEACPVDAIVEGPNF 124
              CP DAI   P F
Sbjct: 230 IVTCPTDAI--TPRF 242


>gi|296158460|ref|ZP_06841291.1| dihydroorotate dehydrogenase family protein [Burkholderia sp.
           Ch1-1]
 gi|295891404|gb|EFG71191.1| dihydroorotate dehydrogenase family protein [Burkholderia sp.
           Ch1-1]
          Length = 444

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 8/75 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117
            +++CI C LC   C   A       +          +++   +C+ C LC   CPV   
Sbjct: 341 DQDKCIQCGLCHIACEDTAHQAIMKEKDGV-----RHFEVMDSECVGCNLCMHVCPVEQC 395

Query: 118 IVE--GPNFEFATET 130
           I      N E+A  T
Sbjct: 396 ITMERVDNGEYANWT 410


>gi|257466531|ref|ZP_05630842.1| NAD-reducing iron-only hydrogenase large subunit [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315917686|ref|ZP_07913926.1| iron hydrogenase 1 [Fusobacterium gonidiaformans ATCC 25563]
 gi|313691561|gb|EFS28396.1| iron hydrogenase 1 [Fusobacterium gonidiaformans ATCC 25563]
          Length = 567

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 59  GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQEACPV 115
              +CI C+ CE+IC   Q+  I +G R          +   +   +C +CG C   CP 
Sbjct: 146 DVTKCIMCRRCESICRDIQSCNILTGVRRGFSAVVDTAFSRSLQHTRCTFCGQCVSVCPT 205

Query: 116 DAIVEGPN 123
            AI E  N
Sbjct: 206 GAIYETDN 213


>gi|229166602|ref|ZP_04294354.1| formate dehydrogenase [Bacillus cereus AH621]
 gi|228616856|gb|EEK73929.1| formate dehydrogenase [Bacillus cereus AH621]
          Length = 975

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+E          + +   Y     +CIAC  C  +C    +             R
Sbjct: 119 HQKYPYE--PKVDASEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 176

Query: 93  TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120
            +     DI+   C+ CG C   CP +A++E
Sbjct: 177 VIWDEGVDINDSSCVSCGQCVTICPCNALME 207



 Score = 39.7 bits (91), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 87  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDASEVDMSHPFYRYDPNQ 146

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 147 CIACGQCVEVC 157


>gi|163800923|ref|ZP_02194823.1| iron-sulfur cluster-binding protein [Vibrio sp. AND4]
 gi|159175272|gb|EDP60069.1| iron-sulfur cluster-binding protein [Vibrio sp. AND4]
          Length = 553

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 36/102 (35%), Gaps = 9/102 (8%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
              + C  C  C A+CP +A+  +           +         CI CGLC++ACP + 
Sbjct: 415 CESKGCTLCMSCVAVCPTRALHTDGE---------SPSLKFIEQDCIQCGLCEKACPENV 465

Query: 118 IVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
           +   P   +  + RQ+     E       R         + D
Sbjct: 466 LTLTPRMNWVKQERQKAVVIHEEKAAECIRCHKPFAPQSMID 507



 Score = 37.8 bits (86), Expect = 0.51,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           C  C   CPA A++ +   +         R +I+   C   G C  ACP +AI 
Sbjct: 186 CDRCVDACPAGALSSQGSDKIGH------RIEINPYLCQGVGTCSTACPTEAIH 233


>gi|117621436|ref|YP_857087.1| anaerobic sulfite reductase subunit C [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117562843|gb|ABK39791.1| anaerobic sulfite reductase subunit C [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 336

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 32/103 (31%), Gaps = 13/103 (12%)

Query: 25  RYFFKAKTTIN-----YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79
           ++ +     +       P +    +    G   + +     ERCI C  C   C   A+ 
Sbjct: 137 KHLYPNPYHLKMVIAGCPNDCAKANMADFGILGIAKIHFNAERCIGCGACVKACSHHAVD 196

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
             +                +  KCI CG C  ACP  A    P
Sbjct: 197 CLAIKHGKAVK--------EESKCIGCGECVLACPTLAWQRDP 231


>gi|320335010|ref|YP_004171721.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Deinococcus maricopensis DSM 21211]
 gi|319756299|gb|ADV68056.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Deinococcus maricopensis DSM 21211]
          Length = 326

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 35/99 (35%), Gaps = 16/99 (16%)

Query: 36  YPFEKGST----------SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
            P E+                  G       P  ++ CI C +C  +CP  AIT +  P 
Sbjct: 216 VPEERVPQDWVWRARALKPTPAPGTPVHWPAPVVDDTCIDCPVCANVCPTNAITRDFQPT 275

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
                   V   +D+  C  C  C ++CP  AI   P +
Sbjct: 276 GE------VTLTLDLAACTSCNACAQSCPPQAITLQPEW 308



 Score = 41.6 bits (96), Expect = 0.033,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 12/55 (21%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           C  C   CP  A+ +                +I+   C  CGLC +ACP  A+  
Sbjct: 34  CDACARACPHDAVILTH------------TVEINEANCTGCGLCVQACPSGALEF 76



 Score = 38.9 bits (89), Expect = 0.24,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 34/115 (29%), Gaps = 26/115 (22%)

Query: 18  GAFFLCLRYFFKAKTTI---NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP 74
              F  L   F+   T+   + P +          E  + +                +  
Sbjct: 186 RGMFGTL---FRGARTVVAQSIPDQPLPFVDWSVPEERVPQDW--------------VWR 228

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           A+A+     P         V  D     CI C +C   CP +AI    +F+   E
Sbjct: 229 ARALKPTPAPGTPVHWPAPVVDD----TCIDCPVCANVCPTNAI--TRDFQPTGE 277


>gi|308186746|ref|YP_003930877.1| Electron transport complex protein rnfC [Pantoea vagans C9-1]
 gi|308057256|gb|ADO09428.1| Electron transport complex protein rnfC [Pantoea vagans C9-1]
          Length = 869

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 3/110 (2%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
               + E+ CI C  C   CPA+ +  +       G          +  CI CG C   C
Sbjct: 368 MGNNDEEQSCIRCSACADACPAK-LLPQQLYWYSQGGDHDKARAHHIDDCIECGACAYVC 426

Query: 114 PVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           P   I     +       + +  + +R L    R+E+   R +  +   R
Sbjct: 427 P-SNIPLVQYYRQEKAELRAIDLEAKRTLEAKARFEARQAR-LEREKQAR 474


>gi|256751838|ref|ZP_05492710.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256749245|gb|EEU62277.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 1197

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 40/123 (32%), Gaps = 30/123 (24%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG   L       + CI C  C  +CP               +A    +  +        
Sbjct: 701 RGIAVLIPEWQ-IDNCIQCNQCSFVCPHAVIRPFLLTEKEVKKAPPTFNVKKAIGRGLEG 759

Query: 94  VRYDID--MIKCIYCGLCQEAC--PVDAIVEGP----------NFEFATE-TRQELYYDK 138
           + Y I    + C  CG C + C  P  A++  P          N+E+A     ++   DK
Sbjct: 760 LWYRIQVSPLDCTGCGNCADVCPAPTKALIMKPAEEQIEKEARNWEYAVTLDVKDNLVDK 819

Query: 139 ERL 141
             L
Sbjct: 820 TTL 822


>gi|78355772|ref|YP_387221.1| hydrogenase-like [Desulfovibrio desulfuricans subsp. desulfuricans
           str. G20]
 gi|78218177|gb|ABB37526.1| hydrogenase-like protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 483

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 6/66 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQEA 112
             ++C+ C  C  +CP  AI     P                +  ID  +CI+CG C  A
Sbjct: 145 DPDKCVQCGKCMNVCPYHAIVQIPIPCEESCPTGAISKDECGKQVIDYDRCIFCGKCMAA 204

Query: 113 CPVDAI 118
           CP  A+
Sbjct: 205 CPFAAV 210



 Score = 41.2 bits (95), Expect = 0.047,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 27/72 (37%), Gaps = 13/72 (18%)

Query: 54  RRYPNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           R +      C  C  + C   CP  A+ I  G              ID  KC+ CG C  
Sbjct: 109 RTHYEATSACRGCLAEACVQHCPKDAVRIVDGKS-----------RIDPDKCVQCGKCMN 157

Query: 112 ACPVDAIVEGPN 123
            CP  AIV+ P 
Sbjct: 158 VCPYHAIVQIPI 169


>gi|323705569|ref|ZP_08117143.1| pyruvate ferredoxin/flavodoxin oxidoreductase
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535046|gb|EGB24823.1| pyruvate ferredoxin/flavodoxin oxidoreductase
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 1172

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 40/123 (32%), Gaps = 30/123 (24%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG   +       E+CI C  C  +CP                A       +        
Sbjct: 675 RGIAVMIPQWQ-IEKCIQCNQCSLVCPHAVIRPFLLNDEEVKNAPPTFETKKAVGRGLEA 733

Query: 94  VRYDID--MIKCIYCGLCQEACPVD--AIVEGP----------NFEFATE-TRQELYYDK 138
            +Y I    + C  CG C + CP    A+V  P          N+EFA +   ++   +K
Sbjct: 734 FQYRIQVSPLDCTGCGNCADVCPAPGKALVMMPAEGEIENQADNWEFAVKIKPKDNVMEK 793

Query: 139 ERL 141
             L
Sbjct: 794 TTL 796


>gi|229058395|ref|ZP_04196779.1| formate dehydrogenase [Bacillus cereus AH603]
 gi|228719904|gb|EEL71494.1| formate dehydrogenase [Bacillus cereus AH603]
          Length = 978

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+E          + +   Y     +CIAC  C  +C    +             R
Sbjct: 119 HQKYPYE--PKVDASEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 176

Query: 93  TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120
            +     DI+   C+ CG C   CP +A++E
Sbjct: 177 VIWDEGVDINDSSCVSCGQCVTICPCNALME 207



 Score = 39.7 bits (91), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 87  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDASEVDMSHPFYRYDPNQ 146

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 147 CIACGQCVEVC 157


>gi|153884|gb|AAA99277.1| anaerobic sulfite reductase [Salmonella enterica subsp. enterica
           serovar Typhimurium]
          Length = 337

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 29/94 (30%), Gaps = 8/94 (8%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
               +  P +    S    G   + +     +RCI C  C   C   A+   +       
Sbjct: 147 KTVIVGCPNDCAKASMADLGIIGVAKMRFTADRCIGCGACVKACSHHAVGCLALKNGKAV 206

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                    +   CI CG C  ACP  A    P+
Sbjct: 207 K--------EESACIGCGECVLACPTLAWQRKPD 232


>gi|218767102|ref|YP_002341614.1| putative ferredoxin [Neisseria meningitidis Z2491]
 gi|121051110|emb|CAM07381.1| putative ferredoxin [Neisseria meningitidis Z2491]
          Length = 279

 Score = 51.6 bits (122), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 10/66 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C  C   CPA AI               + + +   +C  CGLC   CPVD
Sbjct: 73  QIDETACIGCTACIRACPADAIMGAGK----------LMHTVIADECTGCGLCVAPCPVD 122

Query: 117 AIVEGP 122
            I   P
Sbjct: 123 CIHMQP 128


>gi|294673934|ref|YP_003574550.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Prevotella
           ruminicola 23]
 gi|294474000|gb|ADE83389.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Prevotella
           ruminicola 23]
          Length = 1191

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 18/104 (17%)

Query: 28  FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------- 80
           F    T++  +E G+ +   RG  A     N ++ CI C  C  ICP  AI         
Sbjct: 658 FVKHNTVDGSWEVGTAAYEKRGVEAFVPVWN-KDNCIQCNQCAYICPHAAIRPFVLDDEE 716

Query: 81  --------ESGPRCHDGTRRTVRYDIDMI--KCIYCGLCQEACP 114
                   ++         + + + I+     C+ CG C + CP
Sbjct: 717 LKGFAAAADTLEMKAPAAMKGMHFRIETSVLDCLGCGNCADICP 760


>gi|227871720|ref|ZP_03990129.1| ferredoxin hydrogenase [Oribacterium sinus F0268]
 gi|227842429|gb|EEJ52650.1| ferredoxin hydrogenase [Oribacterium sinus F0268]
          Length = 488

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110
                +C  C +C   CP  AI   + P         + YD      ID  +CI CG C 
Sbjct: 127 HIDPMKCKECGMCATACPYSAIAQLTRPCKKPCPVNAITYDENGLCVIDDNRCIRCGQCV 186

Query: 111 EACPVDAI 118
            +CP  AI
Sbjct: 187 HSCPFGAI 194


>gi|239627105|ref|ZP_04670136.1| nitroreductase [Clostridiales bacterium 1_7_47_FAA]
 gi|239517251|gb|EEQ57117.1| nitroreductase [Clostridiales bacterium 1_7_47FAA]
          Length = 264

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 31/90 (34%), Gaps = 11/90 (12%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                  E CI C LC+  CPA  I IE+               I    CI CG C   C
Sbjct: 5   HIIRINPETCIGCGLCKRDCPAGNIQIENKKA-----------KILTQSCIMCGHCVAIC 53

Query: 114 PVDAIVEGPNFEFATETRQELYYDKERLLN 143
           P  A+      E   E  +    + + LL 
Sbjct: 54  PKAAVTMTGFDEPPIEIGKPATLNPQELLA 83



 Score = 34.7 bits (78), Expect = 3.9,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 13/33 (39%)

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            +      I+   CI CGLC+  CP   I    
Sbjct: 1   MKNKHIIRINPETCIGCGLCKRDCPAGNIQIEN 33


>gi|153002602|ref|YP_001368283.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS185]
 gi|151367220|gb|ABS10220.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS185]
          Length = 553

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 31/82 (37%), Gaps = 9/82 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E+C  C  C AICP  A+                        C+ CGLC+ ACP   I
Sbjct: 419 NVEKCTMCMSCVAICPTVALQDGGDKPALH---------FIEQNCVQCGLCEAACPEKVI 469

Query: 119 VEGPNFEFATETRQELYYDKER 140
              P   F   TRQ+ +  KE 
Sbjct: 470 SLTPQINFDKATRQQQHTLKEE 491



 Score = 38.9 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 11/53 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C   CPA AI+  +              +ID   C   G C  ACP  AI
Sbjct: 195 CNRCLNFCPADAISSVAKK-----------IEIDPYLCHGAGSCTSACPTGAI 236


>gi|39996453|ref|NP_952404.1| iron-sulfur cluster-binding protein [Geobacter sulfurreducens PCA]
 gi|39983333|gb|AAR34727.1| iron-sulfur cluster-binding protein [Geobacter sulfurreducens PCA]
          Length = 322

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 29/87 (33%), Gaps = 10/87 (11%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            PF+   ++    G           + CI C LC   C   AI +    +          
Sbjct: 145 CPFDCPKSATNDVGFQGAVWPVLSADHCIGCGLCAKSCTEDAIAMGDNGKPLF------- 197

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGP 122
                  C+YCG C + CP +A   G 
Sbjct: 198 ---IPANCLYCGDCLKVCPTEAWRAGK 221



 Score = 39.7 bits (91), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 21/62 (33%), Gaps = 2/62 (3%)

Query: 64  IACKLCEAIC-PAQAITIESGPRC-HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           I     +     A              G +  V   +    CI CGLC ++C  DAI  G
Sbjct: 131 IPTGHHKFKVGFAGCPFDCPKSATNDVGFQGAVWPVLSADHCIGCGLCAKSCTEDAIAMG 190

Query: 122 PN 123
            N
Sbjct: 191 DN 192


>gi|317132141|ref|YP_004091455.1| dihydroorotate dehydrogenase family protein [Ethanoligenens
           harbinense YUAN-3]
 gi|315470120|gb|ADU26724.1| dihydroorotate dehydrogenase family protein [Ethanoligenens
           harbinense YUAN-3]
          Length = 401

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 6/63 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + C+ C  C   C   A    S        + T R D+   KC+ C LC   CP  AI
Sbjct: 339 DRDACVGCGRCFISCRDGAHQAIS------WEKTTRRPDVLTEKCVGCHLCTLVCPTQAI 392

Query: 119 VEG 121
             G
Sbjct: 393 HPG 395


>gi|59711970|ref|YP_204746.1| formate hydrogenlyase subunit 6 [Vibrio fischeri ES114]
 gi|59480071|gb|AAW85858.1| formate hydrogenlyase subunit 6 [Vibrio fischeri ES114]
          Length = 566

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 10/84 (11%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
              + C  C  C A+CP +A+  +           +         C+ CGLC  ACP   
Sbjct: 428 CETKDCTLCMGCVAVCPTRALHSDPD---------SPTLKFIEQDCVQCGLCVSACPEKV 478

Query: 118 IVEGPNFEFATETRQE-LYYDKER 140
           +       +  ETRQE     KE 
Sbjct: 479 LSMKVQMNWNQETRQETQIVHKED 502



 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 6/53 (11%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C+ C   CPA A+T E   +            I+   C   G C  ACP +AI
Sbjct: 197 CERCVDACPAGALTSEGSDQTGH------HIQINPYLCQGVGTCATACPTEAI 243


>gi|332296339|ref|YP_004438262.1| hydrogenase, Fe-only [Thermodesulfobium narugense DSM 14796]
 gi|332179442|gb|AEE15131.1| hydrogenase, Fe-only [Thermodesulfobium narugense DSM 14796]
          Length = 449

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 38/108 (35%), Gaps = 15/108 (13%)

Query: 31  KTTINYP----FEKGSTSP-RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
             T   P      KG      +R           + +C+ C  C   CPA AI  E G  
Sbjct: 7   PVTTFLPGPDSRVKGPLPEGTYRPGELKGIIKINQNKCVGCDTCREQCPANAIRGELGVA 66

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
                       ID++KCI CG C   CP  AI +    E   +  ++
Sbjct: 67  HS----------IDIMKCITCGQCLINCPFGAIEQMSFVEEVAKKLED 104


>gi|326201391|ref|ZP_08191263.1| NADH dehydrogenase (quinone) [Clostridium papyrosolvens DSM 2782]
 gi|325988959|gb|EGD49783.1| NADH dehydrogenase (quinone) [Clostridium papyrosolvens DSM 2782]
          Length = 597

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 10/69 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           + +Y     +C +C +C  +CP   I  E          + V Y ID  KC  CG+C E 
Sbjct: 539 MMKYTVEASKCKSCGICAKVCPMSCIKGE----------KKVPYVIDNTKCAKCGVCMEK 588

Query: 113 CPVDAIVEG 121
           CP  AI +G
Sbjct: 589 CPFKAISKG 597



 Score = 38.5 bits (88), Expect = 0.32,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 18/40 (45%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +          +  ++Y ++  KC  CG+C + CP+  I
Sbjct: 525 HVFDKKCPAGVCKSMMKYTVEASKCKSCGICAKVCPMSCI 564


>gi|161612684|ref|YP_001586649.1| hypothetical protein SPAB_00381 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|168261406|ref|ZP_02683379.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|161362048|gb|ABX65816.1| hypothetical protein SPAB_00381 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|205349348|gb|EDZ35979.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 337

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 28/94 (29%), Gaps = 8/94 (8%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
               +  P +    S    G   + +      RCI C  C   C   A+   +       
Sbjct: 147 KTVIVGCPNDCAKASMADLGIIGVAKMRFTANRCIGCGACVKACSHHAVGCLALKNGKAV 206

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                    +   CI CG C  ACP  A    P+
Sbjct: 207 K--------EESACIGCGECVLACPTLAWQRKPD 232


>gi|138895374|ref|YP_001125827.1| subunit gamma of pyruvate oxidoreductase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196249178|ref|ZP_03147877.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit [Geobacillus
           sp. G11MC16]
 gi|134266887|gb|ABO67082.1| Gamma subunit of pyruvate oxidoreductase [Geobacillus
           thermodenitrificans NG80-2]
 gi|196211407|gb|EDY06167.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit [Geobacillus
           sp. G11MC16]
          Length = 336

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               ++CI C  C+ +CP      E       G ++     ID   C  C  C EACP  
Sbjct: 246 RWEADKCIHCVACDNVCPDLCFVWE-ERVDKKGRKQMFLAGIDYQYCKGCLKCVEACPTA 304

Query: 117 AI 118
           A+
Sbjct: 305 AL 306


>gi|70732171|ref|YP_261927.1| RnfABCDGE type electron transport complex subunit B [Pseudomonas
           fluorescens Pf-5]
 gi|68346470|gb|AAY94076.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas
           fluorescens Pf-5]
          Length = 401

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 29/78 (37%), Gaps = 10/78 (12%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
              RGE   +     E  CI C  C   CP  AI   +           + + + + +C 
Sbjct: 63  DHSRGEAPAQIAHIREAECIGCTKCIQACPVDAIVGAAK----------LMHSVLIDECT 112

Query: 105 YCGLCQEACPVDAIVEGP 122
            C LC   CPVD I   P
Sbjct: 113 GCDLCVAPCPVDCIDMLP 130


>gi|308070037|ref|YP_003871642.1| formate dehydrogenase subunit alpha [Paenibacillus polymyxa E681]
 gi|305859316|gb|ADM71104.1| Formate dehydrogenase alpha chain [Paenibacillus polymyxa E681]
          Length = 980

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP++          + +   Y     +CIAC  C  +C    +             R
Sbjct: 123 HQKYPYQPKVDPTEV--DMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSLDWEAERPR 180

Query: 93  TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120
            +  D   I+   C+ CG C   CP +A++E
Sbjct: 181 VIWDDRVAINDSSCVSCGQCVTVCPCNALME 211



 Score = 38.2 bits (87), Expect = 0.41,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 18/71 (25%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C             Q    +      +       Y  D  +
Sbjct: 91  RLLENHLLYCTVCDNNNGNCTLHNTAELMEIEHQKYPYQPKVDPTEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|261821594|ref|YP_003259700.1| electron transport complex protein RnfC [Pectobacterium wasabiae
           WPP163]
 gi|261605607|gb|ACX88093.1| electron transport complex, RnfABCDGE type, C subunit
           [Pectobacterium wasabiae WPP163]
          Length = 737

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 32/103 (31%), Gaps = 12/103 (11%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ CI C  C   CPA  +  +       G       +  +  CI CG C   CP    
Sbjct: 373 EEQSCIRCSKCADACPAG-LLPQQLYWFSRGQEHEKARNHHLFDCIECGACAYVCP---- 427

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161
               N       RQE    K  +    +  +      +  D+ 
Sbjct: 428 ---SNIPLVQYYRQE----KAEIRAIDEDAQRAAQAKVRFDAK 463


>gi|320115140|ref|YP_004185299.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|319928231|gb|ADV78916.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 1197

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 40/123 (32%), Gaps = 30/123 (24%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG   L       + CI C  C  +CP               +A    +  +        
Sbjct: 701 RGIAVLIPEWQ-IDNCIQCNQCSFVCPHAVIRPFLLTEKEVKKAPPTFNVKKAIGRGLEG 759

Query: 94  VRYDID--MIKCIYCGLCQEAC--PVDAIVEGP----------NFEFATE-TRQELYYDK 138
           + Y I    + C  CG C + C  P  A++  P          N+E+A     ++   DK
Sbjct: 760 LWYRIQVSPLDCTGCGNCADVCPAPTKALIMKPAEEQIEKEARNWEYAVTLDVKDNLVDK 819

Query: 139 ERL 141
             L
Sbjct: 820 TTL 822


>gi|15642785|ref|NP_227826.1| NADP-reducing hydrogenase, subunit C [Thermotoga maritima MSB8]
 gi|148270047|ref|YP_001244507.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1]
 gi|170288731|ref|YP_001738969.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2]
 gi|281412072|ref|YP_003346151.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10]
 gi|4980493|gb|AAD35104.1|AE001689_10 NADP-reducing hydrogenase, subunit C [Thermotoga maritima MSB8]
 gi|147735591|gb|ABQ46931.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1]
 gi|170176234|gb|ACB09286.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2]
 gi|281373175|gb|ADA66737.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10]
          Length = 607

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 15/96 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            LRY F+ +   +   ++  +        AL  Y    E+C+ C  C  +CP Q I+ + 
Sbjct: 513 TLRY-FRDEYLAHVKEKRCPSKKC----KALISYVIDPEKCVGCTACARVCPVQCISGQ- 566

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                        + ID  +C+ CG C E C   AI
Sbjct: 567 ---------VRQPHVIDQAECVRCGSCIEVCRFGAI 593


>gi|167036716|ref|YP_001664294.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing
           protein [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|167039436|ref|YP_001662421.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing
           protein [Thermoanaerobacter sp. X514]
 gi|300915448|ref|ZP_07132761.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter
           sp. X561]
 gi|307725240|ref|YP_003904991.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter
           sp. X513]
 gi|166853676|gb|ABY92085.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Thermoanaerobacter sp. X514]
 gi|166855550|gb|ABY93958.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|300888508|gb|EFK83657.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter
           sp. X561]
 gi|307582301|gb|ADN55700.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter
           sp. X513]
          Length = 1171

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 40/123 (32%), Gaps = 30/123 (24%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG   L       + CI C  C  +CP               +A    +  +        
Sbjct: 675 RGIAVLIPEWQ-IDNCIQCNQCSFVCPHAVIRPFLLTEKEVKKAPPTFNVKKAIGRGLEG 733

Query: 94  VRYDID--MIKCIYCGLCQEAC--PVDAIVEGP----------NFEFATE-TRQELYYDK 138
           + Y I    + C  CG C + C  P  A++  P          N+E+A     ++   DK
Sbjct: 734 LWYRIQVSPLDCTGCGNCADVCPAPTKALIMKPAEEQIEKEARNWEYAVTLDVKDNLVDK 793

Query: 139 ERL 141
             L
Sbjct: 794 TTL 796


>gi|220931476|ref|YP_002508384.1| NADH dehydrogenase (ubiquinone) 51 kDa subunit [Halothermothrix
           orenii H 168]
 gi|219992786|gb|ACL69389.1| NADH dehydrogenase (ubiquinone) 51 kDa subunit [Halothermothrix
           orenii H 168]
          Length = 594

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 11/69 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L RY    E C  C LC  +CP  AIT E                ID+ KCI CG C + 
Sbjct: 536 LTRYKIIAEECRNCGLCAKVCPVDAITKEEEAHV-----------IDLDKCIKCGSCLDK 584

Query: 113 CPVDAIVEG 121
           CP +A+ +G
Sbjct: 585 CPFNAVQKG 593



 Score = 41.2 bits (95), Expect = 0.047,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 19/40 (47%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            I+         R   RY I   +C  CGLC + CPVDAI
Sbjct: 522 HIKDKNCPAGSCRNLTRYKIIAEECRNCGLCAKVCPVDAI 561


>gi|306792261|ref|ZP_07430563.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           SUMu005]
 gi|308339184|gb|EFP28035.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           SUMu005]
          Length = 575

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 3/64 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + C     C   CP   I          G   +    ID + C+ CG C  ACP
Sbjct: 1   MPHVITQSCCNDASCVFACPVNCIHPTPDE---PGFATSEMLYIDPVACVDCGACVTACP 57

Query: 115 VDAI 118
           V AI
Sbjct: 58  VSAI 61


>gi|289555333|ref|ZP_06444543.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           KZN 605]
 gi|289439965|gb|EFD22458.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           KZN 605]
          Length = 550

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 3/64 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + C     C   CP   I          G   +    ID + C+ CG C  ACP
Sbjct: 1   MPHVITQSCCNDASCVFACPVNCIHPTPDE---PGFATSEMLYIDPVACVDCGACVTACP 57

Query: 115 VDAI 118
           V AI
Sbjct: 58  VSAI 61


>gi|257052556|ref|YP_003130389.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Halorhabdus utahensis DSM 12940]
 gi|256691319|gb|ACV11656.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Halorhabdus utahensis DSM 12940]
          Length = 97

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 9/65 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E CIAC  C+  CP QA     G            Y  D+  C  CG+C+E CPVDAI
Sbjct: 40  DAETCIACGQCDTFCPDQAAKPVEGEDF---------YAFDLDYCKGCGICEEVCPVDAI 90

Query: 119 VEGPN 123
                
Sbjct: 91  DMIRE 95


>gi|15608026|ref|NP_215401.1| NADPH:adrenodoxin oxidoreductase FprB [Mycobacterium tuberculosis
           H37Rv]
 gi|15840300|ref|NP_335337.1| ferredoxin/ferredoxin--NADP reductase, putative [Mycobacterium
           tuberculosis CDC1551]
 gi|31792074|ref|NP_854567.1| NADPH:adrenodoxin oxidoreductase FprB [Mycobacterium bovis
           AF2122/97]
 gi|121636809|ref|YP_977032.1| putative NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|148660663|ref|YP_001282186.1| putative ferredoxin/ferredoxin--NADP reductase [Mycobacterium
           tuberculosis H37Ra]
 gi|148822094|ref|YP_001286848.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           F11]
 gi|167968347|ref|ZP_02550624.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           H37Ra]
 gi|215402685|ref|ZP_03414866.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           02_1987]
 gi|215410472|ref|ZP_03419280.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           94_M4241A]
 gi|215426152|ref|ZP_03424071.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           T92]
 gi|215429743|ref|ZP_03427662.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           EAS054]
 gi|218752551|ref|ZP_03531347.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           GM 1503]
 gi|219556751|ref|ZP_03535827.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           T17]
 gi|224989280|ref|YP_002643967.1| putative NADPH:adrenodoxin oxidoreductase [Mycobacterium bovis BCG
           str. Tokyo 172]
 gi|253800092|ref|YP_003033093.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           KZN 1435]
 gi|254231194|ref|ZP_04924521.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           C]
 gi|254363817|ref|ZP_04979863.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           str. Haarlem]
 gi|254549863|ref|ZP_05140310.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260185781|ref|ZP_05763255.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           CPHL_A]
 gi|260199906|ref|ZP_05767397.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           T46]
 gi|260204088|ref|ZP_05771579.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           K85]
 gi|289442296|ref|ZP_06432040.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           T46]
 gi|289446451|ref|ZP_06436195.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           CPHL_A]
 gi|289568850|ref|ZP_06449077.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           T17]
 gi|289573512|ref|ZP_06453739.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           K85]
 gi|289744616|ref|ZP_06503994.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           02_1987]
 gi|289749408|ref|ZP_06508786.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           T92]
 gi|289752941|ref|ZP_06512319.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           EAS054]
 gi|289761017|ref|ZP_06520395.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           GM 1503]
 gi|294996366|ref|ZP_06802057.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           210]
 gi|297633403|ref|ZP_06951183.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           KZN 4207]
 gi|297730388|ref|ZP_06959506.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           KZN R506]
 gi|298524378|ref|ZP_07011787.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           94_M4241A]
 gi|313657715|ref|ZP_07814595.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           KZN V2475]
 gi|54037133|sp|P65528|FPRB_MYCTU RecName: Full=Probable ferredoxin/ferredoxin--NADP reductase;
           Short=FNR
 gi|54037134|sp|P65529|FPRB_MYCBO RecName: Full=Probable ferredoxin/ferredoxin--NADP reductase;
           Short=FNR
 gi|1314025|emb|CAA97393.1| PROBABLE NADPH:ADRENODOXIN OXIDOREDUCTASE FPRB (ADRENODOXIN
           REDUCTASE) (AR) (FERREDOXIN-NADP(+) REDUCTASE)
           [Mycobacterium tuberculosis H37Rv]
 gi|13880462|gb|AAK45151.1| ferredoxin/ferredoxin--NADP reductase, putative [Mycobacterium
           tuberculosis CDC1551]
 gi|31617661|emb|CAD93771.1| PROBABLE NADPH:ADRENODOXIN OXIDOREDUCTASE FPRB (ADRENODOXIN
           REDUCTASE) (AR) (FERREDOXIN-NADP(+) REDUCTASE)
           [Mycobacterium bovis AF2122/97]
 gi|121492456|emb|CAL70924.1| Probable nadph:adrenodoxin oxidoreductase fprB [Mycobacterium bovis
           BCG str. Pasteur 1173P2]
 gi|124600253|gb|EAY59263.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           C]
 gi|134149331|gb|EBA41376.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           str. Haarlem]
 gi|148504815|gb|ABQ72624.1| putative ferredoxin/ferredoxin--NADP reductase [Mycobacterium
           tuberculosis H37Ra]
 gi|148720621|gb|ABR05246.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           F11]
 gi|224772393|dbj|BAH25199.1| putative NADPH:adrenodoxin oxidoreductase [Mycobacterium bovis BCG
           str. Tokyo 172]
 gi|253321595|gb|ACT26198.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           KZN 1435]
 gi|289415215|gb|EFD12455.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           T46]
 gi|289419409|gb|EFD16610.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           CPHL_A]
 gi|289537943|gb|EFD42521.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           K85]
 gi|289542604|gb|EFD46252.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           T17]
 gi|289685144|gb|EFD52632.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           02_1987]
 gi|289689995|gb|EFD57424.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           T92]
 gi|289693528|gb|EFD60957.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           EAS054]
 gi|289708523|gb|EFD72539.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           GM 1503]
 gi|298494172|gb|EFI29466.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           94_M4241A]
 gi|323720595|gb|EGB29673.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           CDC1551A]
 gi|326904895|gb|EGE51828.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           W-148]
 gi|328459830|gb|AEB05253.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           KZN 4207]
          Length = 575

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 3/64 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + C     C   CP   I          G   +    ID + C+ CG C  ACP
Sbjct: 1   MPHVITQSCCNDASCVFACPVNCIHPTPDE---PGFATSEMLYIDPVACVDCGACVTACP 57

Query: 115 VDAI 118
           V AI
Sbjct: 58  VSAI 61


>gi|15920260|ref|NP_375929.1| formate dehydrogenase subunit alpha [Sulfolobus tokodaii str. 7]
 gi|15621042|dbj|BAB65038.1| 973aa long hypothetical formate dehydrogenase alpha subunit
           [Sulfolobus tokodaii str. 7]
          Length = 973

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQE 111
            Y     +CI C  C   C   A+             R V  +   I    C+ CG C  
Sbjct: 135 FYVYNPSQCILCGRCVEACQDFAVNEVIWINWDLNPPRVVWDNGNPIGNSSCVNCGTCVT 194

Query: 112 ACPVDAIVE 120
            CPV+A++E
Sbjct: 195 VCPVNALME 203



 Score = 41.2 bits (95), Expect = 0.052,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 7/80 (8%)

Query: 48  RGEHALRRYPNGEERCIACKL-------CEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100
           R +   R     +  C  C+         EA+      + +   + +        Y  + 
Sbjct: 81  RKKAVERILKYHKLYCTVCENNNGDCPLHEAVIKLGINSQQYIEKPYPIDDSGPFYVYNP 140

Query: 101 IKCIYCGLCQEACPVDAIVE 120
            +CI CG C EAC   A+ E
Sbjct: 141 SQCILCGRCVEACQDFAVNE 160


>gi|240102484|ref|YP_002958793.1| Indolepyruvate ferredoxin oxidoreductase alpha subunit (iorA)
           [Thermococcus gammatolerans EJ3]
 gi|239910038|gb|ACS32929.1| Indolepyruvate ferredoxin oxidoreductase alpha subunit (iorA)
           [Thermococcus gammatolerans EJ3]
          Length = 647

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 27/78 (34%), Gaps = 9/78 (11%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R       Y   EE+C  CK+C       AI  ++  +            ID   C  CG
Sbjct: 579 RKGERWPIYHVIEEKCTGCKICINAYGCPAIYWDAEKKKA---------RIDPTICWGCG 629

Query: 108 LCQEACPVDAIVEGPNFE 125
            C + CP DA       E
Sbjct: 630 GCAQVCPFDAFEPMKEGE 647


>gi|229004682|ref|ZP_04162419.1| formate dehydrogenase [Bacillus mycoides Rock1-4]
 gi|228756570|gb|EEM05878.1| formate dehydrogenase [Bacillus mycoides Rock1-4]
          Length = 979

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+E          + +   Y     +CIAC  C  +C    +             R
Sbjct: 123 HQKYPYE--PKVDASEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 180

Query: 93  TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120
            +     DI+   C+ CG C   CP +A++E
Sbjct: 181 VIWDDGEDINDSSCVSCGQCVTICPCNALME 211



 Score = 40.1 bits (92), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 91  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDASEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|325145280|gb|EGC67558.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
           M01-240013]
          Length = 279

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CPA AI               + + +   +C  CGLC   CPVD I
Sbjct: 75  DESACIGCTACIRACPADAIMGAGK----------LMHTVIADECTGCGLCVAPCPVDCI 124

Query: 119 VEGP 122
              P
Sbjct: 125 HMQP 128



 Score = 35.5 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 12/23 (52%), Positives = 13/23 (56%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIV 119
            ID   CI C  C  ACP DAI+
Sbjct: 73  RIDESACIGCTACIRACPADAIM 95


>gi|308271652|emb|CBX28260.1| hypothetical protein N47_G35840 [uncultured Desulfobacterium sp.]
          Length = 1087

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 28/89 (31%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
             P          +   +  R+  GE+ CI C LC  IC     +  S        +   
Sbjct: 95  RCPDVPVLQKLGEQYGISETRFKKGEDTCILCGLCTRICAKMGNSAISLTGRGVEMKVDT 154

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
            + I    C+ CG C   CP   I     
Sbjct: 155 PFHIQTEACLSCGACASVCPTGHITLEKI 183



 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 4/59 (6%)

Query: 62   RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             C +C +C +ICP  A +           +      I+ + C  CGLC  +C   AI  
Sbjct: 1014 YCSSCGVCVSICPYSAPSFIEESARFFPGKA----QINPVLCKGCGLCVASCRSGAIRL 1068


>gi|188585464|ref|YP_001917009.1| hydrogenase large subunit domain protein [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179350151|gb|ACB84421.1| hydrogenase large subunit domain protein [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 482

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 27/75 (36%), Gaps = 6/75 (8%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG------TRRTVRYDIDMIKCI 104
               +     ++CI C  C+  CP  AI     P                +  ID  KCI
Sbjct: 114 FVQHKAKIDGQKCIECGKCKDACPYNAIVDVMRPCKKACGVNAINIEVNKKATIDNDKCI 173

Query: 105 YCGLCQEACPVDAIV 119
            CG C   CP  AI+
Sbjct: 174 QCGACVYQCPFGAIM 188



 Score = 38.9 bits (89), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 13/58 (22%)

Query: 63  CIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C    C + CP  AI                   ID  KCI CG C++ACP +AI
Sbjct: 95  CRGCLANHCVSYCPVGAIEFVQHKA-----------KIDGQKCIECGKCKDACPYNAI 141


>gi|161502296|ref|YP_001569408.1| hypothetical protein SARI_00327 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160863643|gb|ABX20266.1| hypothetical protein SARI_00327 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 344

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 28/94 (29%), Gaps = 8/94 (8%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
               +  P +    S    G   + +     ERCI C  C   C   A+   +       
Sbjct: 154 KTVIVGCPNDCAKASMADLGIIGVAKMRFTAERCIGCGACMKACSHHAVGCLALKNGKAV 213

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                    +   CI CG C  ACP  A    P 
Sbjct: 214 K--------EESACIGCGECVLACPTLAWQRKPE 239


>gi|149915672|ref|ZP_01904198.1| iron-sulfur cluster-binding protein, putative [Roseobacter sp.
           AzwK-3b]
 gi|149810564|gb|EDM70407.1| iron-sulfur cluster-binding protein, putative [Roseobacter sp.
           AzwK-3b]
          Length = 632

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 31/99 (31%), Gaps = 13/99 (13%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
                      L       + C  C  C ++CP+ A+                +      
Sbjct: 467 PLPEDAPYGAVLV----DTDACTLCLSCVSLCPSGALLENPDK---------PQLRFQED 513

Query: 102 KCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140
            C+ CGLC   CP DAI   P    A     ++  ++E 
Sbjct: 514 ACLQCGLCANVCPEDAITYEPRLNLADAAMTQVVLNEEE 552



 Score = 38.5 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 19/55 (34%), Gaps = 11/55 (20%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C  C  ICP  AI                   ID + C  CG C   CP  AI
Sbjct: 257 VGCSNCLDICPTGAIIPAGE-----------HVTIDPMICAGCGACAARCPSGAI 300


>gi|160895522|ref|YP_001561104.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Delftia acidovorans
           SPH-1]
 gi|160361106|gb|ABX32719.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Delftia acidovorans
           SPH-1]
          Length = 439

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 26/70 (37%), Gaps = 11/70 (15%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
               L ++    E CI C  CEA CP  AIT +              Y +   +C  C  
Sbjct: 7   EHGILTQHLIDPEICIRCNTCEATCPVGAITHDD-----------RNYVVLAEQCNGCMD 55

Query: 109 CQEACPVDAI 118
           C   CP  AI
Sbjct: 56  CVSPCPTGAI 65



 Score = 37.0 bits (84), Expect = 0.80,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 12/25 (48%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           ID   CI C  C+  CPV AI    
Sbjct: 16  IDPEICIRCNTCEATCPVGAITHDD 40


>gi|52081124|ref|YP_079915.1| formate dehydrogenase subunit alpha YrhE [Bacillus licheniformis
           ATCC 14580]
 gi|52786501|ref|YP_092330.1| YrhE [Bacillus licheniformis ATCC 14580]
 gi|52004335|gb|AAU24277.1| Formate dehydrogenase, alpha subunit YrhE [Bacillus licheniformis
           ATCC 14580]
 gi|52349003|gb|AAU41637.1| YrhE [Bacillus licheniformis ATCC 14580]
          Length = 979

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 4/89 (4%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+           + +   Y     +CIAC  C  +C    +             R +
Sbjct: 125 KYPYTPKEDPSCAV-DMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWELERPRVI 183

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
             +   I+   C+ CG C   CP +A++E
Sbjct: 184 WDEGVSINESSCVSCGQCVTVCPCNALME 212


>gi|116754225|ref|YP_843343.1| formate dehydrogenase, alpha subunit [Methanosaeta thermophila PT]
 gi|116665676|gb|ABK14703.1| formate dehydrogenase, alpha subunit (F420) [Methanosaeta
           thermophila PT]
          Length = 920

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 27/84 (32%), Gaps = 3/84 (3%)

Query: 39  EKGSTSPRFRGEHALR--RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           E+      ++G    R   +      CI C  C  IC                    +  
Sbjct: 148 ERIRYPVSYKGLPVFREPFFDRDYNLCIMCGRCARICSELRGEGVLQMIADYHRGSWIGP 207

Query: 97  D-IDMIKCIYCGLCQEACPVDAIV 119
           D +    C +CG C +ACP  A+ 
Sbjct: 208 DSLIESTCKFCGACVDACPTGALY 231


>gi|325205297|gb|ADZ00750.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
           M04-240196]
          Length = 279

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CPA AI               + + +   +C  CGLC   CPVD I
Sbjct: 75  DETACIGCTACIRACPADAIMGAGK----------LMHTVIADECTGCGLCVAPCPVDCI 124

Query: 119 VEGP 122
              P
Sbjct: 125 HMQP 128



 Score = 35.1 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 12/23 (52%), Positives = 13/23 (56%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIV 119
            ID   CI C  C  ACP DAI+
Sbjct: 73  RIDETACIGCTACIRACPADAIM 95


>gi|239616787|ref|YP_002940109.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Kosmotoga olearia TBF 19.5.1]
 gi|239505618|gb|ACR79105.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Kosmotoga olearia TBF 19.5.1]
          Length = 98

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 27/81 (33%), Gaps = 10/81 (12%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G   + R      +CI C  C   CP  AI                   ID   C  CG 
Sbjct: 27  GTWRIMRPIWDVNKCINCMQCWLFCPDLAIIQNDAKMEG----------IDYDYCKGCGT 76

Query: 109 CQEACPVDAIVEGPNFEFATE 129
           C   CP DAI   P  +F  E
Sbjct: 77  CAAVCPKDAIEMRPETDFQGE 97


>gi|190893219|ref|YP_001979761.1| NADH-ubiquinone oxidoreductase, chain G [Rhizobium etli CIAT 652]
 gi|190698498|gb|ACE92583.1| NADH-ubiquinone oxidoreductase protein, chain G [Rhizobium etli
           CIAT 652]
          Length = 860

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 3/82 (3%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
            ++   S   R    +    N   RCI C+ C  +C      +  G            ++
Sbjct: 126 DKRVFHSEDIRLSPVIIMNVN---RCIQCQRCVRMCEEVVGAVALGTIEKGMDTAVTGFE 182

Query: 98  IDMIKCIYCGLCQEACPVDAIV 119
             +  C  CG C E CPV A++
Sbjct: 183 GSLASCDQCGNCVEVCPVGALM 204


>gi|169351250|ref|ZP_02868188.1| hypothetical protein CLOSPI_02029 [Clostridium spiroforme DSM 1552]
 gi|169292312|gb|EDS74445.1| hypothetical protein CLOSPI_02029 [Clostridium spiroforme DSM 1552]
          Length = 599

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 37/93 (39%), Gaps = 13/93 (13%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
           + F+ +   +   +K            L +Y   EE+C  C LC   CP  AI  E G  
Sbjct: 517 HQFRDEYIAHIVDKKCPAGVC----KELLQYVIDEEKCRKCGLCAKQCPVGAIHGELGKV 572

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                     Y ID  KCI CG C +AC  + I
Sbjct: 573 P---------YVIDQEKCIKCGQCIKACHFNVI 596



 Score = 40.9 bits (94), Expect = 0.065,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 19/41 (46%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            I          +  ++Y ID  KC  CGLC + CPV AI 
Sbjct: 526 HIVDKKCPAGVCKELLQYVIDEEKCRKCGLCAKQCPVGAIH 566


>gi|149195035|ref|ZP_01872127.1| NADH dehydrogenase subunit I [Caminibacter mediatlanticus TB-2]
 gi|149134748|gb|EDM23232.1| NADH dehydrogenase subunit I [Caminibacter mediatlanticus TB-2]
          Length = 168

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 10/105 (9%)

Query: 12  FLKEFVGAFFLCLRYFFKAKT-TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70
            + E     F  ++ F + +  T +   E    SP FRG H ++      E C  C  C 
Sbjct: 1   MIFEIGEKIFRVMKAFKEPRIATKDIVKEPAHKSPIFRGRHIVKY-----EICTGCDACN 55

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
            ICP  AI ++  P      R     ++++  CI+CGLC++ CP 
Sbjct: 56  KICPVDAIKMKPLPIK----RPNKVPEVNLAICIFCGLCEDVCPT 96



 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 16/46 (34%)

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           A         H       R+ +    C  C  C + CPVDAI   P
Sbjct: 22  ATKDIVKEPAHKSPIFRGRHIVKYEICTGCDACNKICPVDAIKMKP 67


>gi|15679550|ref|NP_276667.1| tungsten formylmethanofuran dehydrogenase, subunit F
           [Methanothermobacter thermautotrophicus str. Delta H]
 gi|2622676|gb|AAB86028.1| tungsten formylmethanofuran dehydrogenase, subunit F
           [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 336

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 34/71 (47%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R +         +E CI C +CE +CP  AI I+                +D  KC++CG
Sbjct: 126 RKDLITGEIEIDKETCIYCGMCEEMCPVDAIEIDHQVPTSSSPAVATDIRVDEDKCVHCG 185

Query: 108 LCQEACPVDAI 118
           +C+  CPVDAI
Sbjct: 186 ICKRICPVDAI 196



 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/74 (39%), Positives = 35/74 (47%), Gaps = 1/74 (1%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
              ++     +E CI CK CE  CP  AITI            T   +ID   CIYCG+C
Sbjct: 89  PKIIKSAEIDDETCIQCKACETACPQDAITITRDL-PERKDLITGEIEIDKETCIYCGMC 147

Query: 110 QEACPVDAIVEGPN 123
           +E CPVDAI     
Sbjct: 148 EEMCPVDAIEIDHQ 161



 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 5/72 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-----DIDMIKCIYCGLCQEAC 113
            E++C+ C +C+ ICP  AIT       +      V        ID   C+ CG CQE C
Sbjct: 177 DEDKCVHCGICKRICPVDAITQVCRICPYGEYEIKVPEVTGTSYIDPELCVNCGWCQEIC 236

Query: 114 PVDAIVEGPNFE 125
           PVDA      FE
Sbjct: 237 PVDAATVTKPFE 248



 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 31/86 (36%), Gaps = 4/86 (4%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R     R+    +  C  C LC  ICP  AI +          +   +  ID  KC+ CG
Sbjct: 3   RTGEENRKLIFQDCLCAVCGLCGEICPVNAIEVNPTGAMVRTEQDESKICIDENKCVLCG 62

Query: 108 LCQEACPVDA----IVEGPNFEFATE 129
           +C   CP  A    I      E A  
Sbjct: 63  MCSSICPFQALDLQIDGTSIKELAEY 88



 Score = 42.0 bits (97), Expect = 0.027,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 3/87 (3%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
               +  E          +         E+ C AC+ C   CP   ++    P+      
Sbjct: 227 VNCGWCQEICPVDAATVTKPFEGELIIDEDTCQACETCVMACPCNVLSF---PKPEKPGE 283

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAI 118
           +  +   D   CIYCG C+ +CPVDAI
Sbjct: 284 KPAKLYKDERFCIYCGACERSCPVDAI 310



 Score = 42.0 bits (97), Expect = 0.028,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 8/101 (7%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG----PRCHDGTRRTV 94
           E   T    R E    +    E +C+ C +C +ICP QA+ ++          +  +   
Sbjct: 34  EVNPTGAMVRTEQDESKICIDENKCVLCGMCSSICPFQALDLQIDGTSIKELAEYPKIIK 93

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
             +ID   CI C  C+ ACP DAI    +       R++L 
Sbjct: 94  SAEIDDETCIQCKACETACPQDAITITRDL----PERKDLI 130


>gi|331084747|ref|ZP_08333835.1| hypothetical protein HMPREF0987_00138 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330410841|gb|EGG90263.1| hypothetical protein HMPREF0987_00138 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 504

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGL 108
                + +CI C  C++ CP  AI  +  P             +  R  ID  KC+ CG+
Sbjct: 147 HSYIDQSKCIKCGKCKSACPYDAIAKKERPCARACGVNAIVSDKVGRAKIDNEKCVSCGM 206

Query: 109 CQEACPVDAI 118
           C  +CP  AI
Sbjct: 207 CMVSCPFGAI 216



 Score = 42.4 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 13/64 (20%)

Query: 57  PNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 C  C    C  +CP  AI++ +G              ID  KCI CG C+ ACP
Sbjct: 118 YEVSNMCKGCLAHPCAEVCPKDAISMVNG-----------HSYIDQSKCIKCGKCKSACP 166

Query: 115 VDAI 118
            DAI
Sbjct: 167 YDAI 170


>gi|328553883|gb|AEB24375.1| YjgC [Bacillus amyloliquefaciens TA208]
 gi|328911259|gb|AEB62855.1| formate dehydrogenase, alpha subunit [Bacillus amyloliquefaciens
           LL3]
          Length = 985

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 9/101 (8%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            ++         + PF++           +   Y    ++CI C  C   C    +T   
Sbjct: 114 TVKEM--KINHQSIPFDQKPYPKD----ESNPFYRYDPDQCILCGRCVEACQDVQVTETL 167

Query: 83  GPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPVDAIVE 120
                    R +      I+   C+ CG C   CP +A++E
Sbjct: 168 SIDWDRKHPRVIWDQDVPINESSCVSCGHCSTVCPCNAMME 208



 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 21/66 (31%), Gaps = 9/66 (13%)

Query: 57  PNGEERCIAC----KLCEAICPA-----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
            N E  C  C      CE             +I    + +        Y  D  +CI CG
Sbjct: 93  HNHELYCTVCDYNNGSCEVHNTVKEMKINHQSIPFDQKPYPKDESNPFYRYDPDQCILCG 152

Query: 108 LCQEAC 113
            C EAC
Sbjct: 153 RCVEAC 158


>gi|312883749|ref|ZP_07743469.1| electron transport complex protein RnfC [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368599|gb|EFP96131.1| electron transport complex protein RnfC [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 645

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/158 (19%), Positives = 44/158 (27%), Gaps = 22/158 (13%)

Query: 13  LKEFVGA---FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69
           L   +         L +          P  K S          +    N    CI C  C
Sbjct: 333 LPRLIMGGPMMGFTLPH-------SQVPITKTSNCILAPTRREISSDQNEMA-CIRCSAC 384

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT- 128
              CPA  +  +               ++ +  CI CG C   CP   I     +  A  
Sbjct: 385 ADACPAS-LLPQQLQWYAKAKDYEKCEELHIGDCIECGACAFVCP-SEIPLVQYYRQAKA 442

Query: 129 ---ETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
                R+E    KE       R+E +  R +  D   R
Sbjct: 443 EIRTNREE----KEAAERAKLRFEEKKAR-LERDKEKR 475


>gi|269968577|ref|ZP_06182579.1| iron-sulfur cluster-binding protein [Vibrio alginolyticus 40B]
 gi|269826788|gb|EEZ81120.1| iron-sulfur cluster-binding protein [Vibrio alginolyticus 40B]
          Length = 553

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 36/102 (35%), Gaps = 9/102 (8%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
              + C  C  C A+CP +A+  +          R+         CI CGLC++ACP   
Sbjct: 415 CESKDCTLCMSCVAVCPTRALHTDG---------RSPSLKFVEQDCIQCGLCEKACPEKV 465

Query: 118 IVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
           +   P   +  + RQ+     E       R         + D
Sbjct: 466 LTLTPRMNWVKKERQKAVVIHEEKAAECIRCHKPFAPQSMID 507



 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 6/54 (11%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           C+ C   CPA A++ E   +         R +I+   C   G C  ACP +AI 
Sbjct: 186 CERCVDACPAGALSSEGSDKTGH------RIEINPYLCQGVGTCATACPTEAIH 233


>gi|260428000|ref|ZP_05781979.1| formate dehydrogenase, alpha subunit [Citreicella sp. SE45]
 gi|260422492|gb|EEX15743.1| formate dehydrogenase, alpha subunit [Citreicella sp. SE45]
          Length = 973

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 31/93 (33%), Gaps = 4/93 (4%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDID 99
                 + +   +     +CI C  C   C       A+TIE        +      D  
Sbjct: 175 PLYMPKDQSNPYFTYDPSKCIVCSRCVRACEEVQGTFALTIEGRGFDSRVSAGAAGDDFL 234

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
              C+ CG C +ACP   + E    E  T  R+
Sbjct: 235 ASDCVSCGACVQACPTATLQEKSVAELGTPDRE 267


>gi|89055049|ref|YP_510500.1| formate dehydrogenase, alpha subunit [Jannaschia sp. CCS1]
 gi|88864598|gb|ABD55475.1| formate dehydrogenase alpha subunit [Jannaschia sp. CCS1]
          Length = 973

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 31/95 (32%), Gaps = 4/95 (4%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYD 97
                   + +   +     +CIAC  C   C       A+T+E        +      D
Sbjct: 164 PNPEWIPKDDSNPYFTYDPAKCIACSRCVRACEEVQGTFALTMEGRGFDSRISAGGPDSD 223

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
                C+ CG C +ACP   + E    E  T  R 
Sbjct: 224 FLTSDCVSCGACVQACPTATLQEKSVIELGTPERS 258


>gi|325141137|gb|EGC63638.1| iron-sulfur cluster-binding protein [Neisseria meningitidis CU385]
          Length = 279

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CPA AI               + + +   +C  CGLC   CPVD I
Sbjct: 75  DESACIGCTACIRACPADAIMGAGK----------LMHTVIADECTGCGLCVAPCPVDCI 124

Query: 119 VEGP 122
              P
Sbjct: 125 HMQP 128



 Score = 35.5 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 12/23 (52%), Positives = 13/23 (56%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIV 119
            ID   CI C  C  ACP DAI+
Sbjct: 73  RIDESACIGCTACIRACPADAIM 95


>gi|315231233|ref|YP_004071669.1| NADH-quinone oxidoreductase subunit I [Thermococcus barophilus MP]
 gi|315184261|gb|ADT84446.1| NADH-quinone oxidoreductase chain I [Thermococcus barophilus MP]
          Length = 152

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 46/146 (31%), Gaps = 46/146 (31%)

Query: 18  GAFFLCLRYFFKAKTTINYPFE----------------------KGSTSPRFRGEHALRR 55
            A FL L+   +   T  +P +                             FRG+     
Sbjct: 4   KAMFLFLKQLMERPFTNPFPVKHAPKNVTALIDKVQRGEAKINPPVPVPEGFRGKLKYT- 62

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP- 114
                ERCI C+LC  +CPA A+                +    + +C++C LC + CP 
Sbjct: 63  ----PERCIGCRLCILVCPANAMEWIPE---------LKKIRHYVSRCMFCALCVDVCPG 109

Query: 115 ---------VDAIVEGPNFEFATETR 131
                    V A+     F  A   +
Sbjct: 110 KKFPGEEKAVKALRMSDEFLLADYNK 135


>gi|296109798|ref|YP_003616747.1| hypothetical protein Metin_1129 [Methanocaldococcus infernus ME]
 gi|295434612|gb|ADG13783.1| hypothetical protein Metin_1129 [Methanocaldococcus infernus ME]
          Length = 356

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 35/76 (46%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
              R     R       +C+ C +C  +CPAQAI +        G   T + +ID  KCI
Sbjct: 14  EISREGKEKRELIWNNNKCVGCGICYDVCPAQAIVLGPLGAIAKGIIDTFKLNIDENKCI 73

Query: 105 YCGLCQEACPVDAIVE 120
            CGLC  ACP DA+  
Sbjct: 74  LCGLCASACPFDALNL 89



 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 35/71 (49%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R +  +      +E+C+ C +C   CPA AI +E         +  V   +D  +C+YC 
Sbjct: 140 RSKFVVGEININKEKCVYCGICADYCPADAIILERVIPTPTNPKPVVDIRVDTERCVYCR 199

Query: 108 LCQEACPVDAI 118
           +C+  CP DAI
Sbjct: 200 VCEYVCPHDAI 210



 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 1/73 (1%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R     R     +E C+ C+ CE +CP +AI +                +I+  KC+YCG
Sbjct: 101 RYPKIKRDIEVSQETCVLCEQCEVVCPKEAIRVH-RELTERSKFVVGEININKEKCVYCG 159

Query: 108 LCQEACPVDAIVE 120
           +C + CP DAI+ 
Sbjct: 160 ICADYCPADAIIL 172



 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 5/105 (4%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA----ITIESGPRCHDGTRRTVRY 96
           G      +G     +    E +CI C LC + CP  A    I   +        +     
Sbjct: 50  GPLGAIAKGIIDTFKLNIDENKCILCGLCASACPFDALNLYINGVNSKDIERYPKIKRDI 109

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNF-EFATETRQELYYDKER 140
           ++    C+ C  C+  CP +AI       E +     E+  +KE+
Sbjct: 110 EVSQETCVLCEQCEVVCPKEAIRVHRELTERSKFVVGEININKEK 154



 Score = 42.4 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 6/106 (5%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           L E +    +  +       T  +       +     +          E+C AC+ C  I
Sbjct: 228 LYEDIKGETIVDKELC---VTCGWCSHICPVNAIKVEKPFEGEVKIDTEKCNACEACVYI 284

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           CP  A+      +  +   +  +  ++   C+ CG C +ACPV+AI
Sbjct: 285 CPCSALEFPEAKKKGE---KVTKLVVNQNLCVLCGACAKACPVNAI 327



 Score = 42.4 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 8/75 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD--------IDMIKCIYCGLCQ 110
             ERC+ C++CE +CP  AI                +          +D   C+ CG C 
Sbjct: 191 DTERCVYCRVCEYVCPHDAIEAICYKCPLHKRIPHAKLYEDIKGETIVDKELCVTCGWCS 250

Query: 111 EACPVDAIVEGPNFE 125
             CPV+AI     FE
Sbjct: 251 HICPVNAIKVEKPFE 265



 Score = 37.0 bits (84), Expect = 0.93,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 23/62 (37%), Gaps = 8/62 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +E C+ C  C  ICP  AI +E                ID  KC  C  C   CP  A+
Sbjct: 239 DKELCVTCGWCSHICPVNAIKVEKPFEGE--------VKIDTEKCNACEACVYICPCSAL 290

Query: 119 VE 120
             
Sbjct: 291 EF 292



 Score = 34.7 bits (78), Expect = 4.4,   Method: Composition-based stats.
 Identities = 12/22 (54%), Positives = 15/22 (68%)

Query: 101 IKCIYCGLCQEACPVDAIVEGP 122
            KC+ CG+C + CP  AIV GP
Sbjct: 30  NKCVGCGICYDVCPAQAIVLGP 51


>gi|325661658|ref|ZP_08150282.1| hypothetical protein HMPREF0490_01016 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472185|gb|EGC75399.1| hypothetical protein HMPREF0490_01016 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 504

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGL 108
                + +CI C  C++ CP  AI  +  P             +  R  ID  KC+ CG+
Sbjct: 147 HSYIDQSKCIKCGKCKSACPYDAIAKKERPCARACGVNAIVSDKVGRAKIDNEKCVSCGM 206

Query: 109 CQEACPVDAI 118
           C  +CP  AI
Sbjct: 207 CMVSCPFGAI 216



 Score = 42.4 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 13/64 (20%)

Query: 57  PNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 C  C    C  +CP  AI++ +G              ID  KCI CG C+ ACP
Sbjct: 118 YEVSNMCKGCLAHPCAEVCPKDAISMVNG-----------HSYIDQSKCIKCGKCKSACP 166

Query: 115 VDAI 118
            DAI
Sbjct: 167 YDAI 170


>gi|325972699|ref|YP_004248890.1| hydrogenase large subunit domain protein [Spirochaeta sp. Buddy]
 gi|324027937|gb|ADY14696.1| hydrogenase large subunit domain protein [Spirochaeta sp. Buddy]
          Length = 486

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR------YDIDMIKCIYCGLCQ 110
              E RCI C  C+ +CP  A+     P         V+       +ID   CI CG C 
Sbjct: 144 HIDESRCIRCGKCKEVCPFHAVVHIPVPCEEACPVNAVKKNAEGYVEIDYKLCISCGRCA 203

Query: 111 EACPVDAIVE 120
            +CP  AIVE
Sbjct: 204 MSCPFGAIVE 213



 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-----DIDMIKCIYCGLCQEACPVDA 117
           C +C     +         + P   +  +  + +      ID  +CI CG C+E CP  A
Sbjct: 105 CSSCPPDRYLISDACRGCFARPCLANCPKDCITFSGGQAHIDESRCIRCGKCKEVCPFHA 164

Query: 118 IVEGP 122
           +V  P
Sbjct: 165 VVHIP 169


>gi|323702072|ref|ZP_08113740.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
 gi|323532954|gb|EGB22825.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
          Length = 627

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 39/97 (40%), Gaps = 15/97 (15%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
             LRY F+ +   +   +K           AL+ Y    E+C  C LC  +CPA AIT E
Sbjct: 543 TTLRY-FRDEYIAHVRDKKCPAGAC----QALKEYYIDPEKCKGCTLCSRVCPAGAITGE 597

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                           I++  C+ CG C E C   AI
Sbjct: 598 KKQPHE----------INVELCLKCGTCAEKCKFGAI 624


>gi|299531136|ref|ZP_07044548.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Comamonas
           testosteroni S44]
 gi|298720839|gb|EFI61784.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Comamonas
           testosteroni S44]
          Length = 433

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 11/70 (15%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
               L+++    E CI C  CEA CP  AIT +              Y +   KC  C  
Sbjct: 8   ENGILKQHLIDPEICIRCNTCEATCPVDAITHDDN-----------NYVVMADKCNGCMD 56

Query: 109 CQEACPVDAI 118
           C   CP  +I
Sbjct: 57  CISPCPTGSI 66



 Score = 38.5 bits (88), Expect = 0.28,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 14/26 (53%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPN 123
           ID   CI C  C+  CPVDAI    N
Sbjct: 17  IDPEICIRCNTCEATCPVDAITHDDN 42


>gi|264676201|ref|YP_003276107.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Comamonas
           testosteroni CNB-2]
 gi|262206713|gb|ACY30811.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Comamonas
           testosteroni CNB-2]
          Length = 433

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 11/70 (15%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
               L+++    E CI C  CEA CP  AIT +              Y +   KC  C  
Sbjct: 8   ENGILKQHLIDPEICIRCNTCEATCPVDAITHDDN-----------NYVVMADKCNGCMD 56

Query: 109 CQEACPVDAI 118
           C   CP  +I
Sbjct: 57  CISPCPTGSI 66



 Score = 38.5 bits (88), Expect = 0.28,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 14/26 (53%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPN 123
           ID   CI C  C+  CPVDAI    N
Sbjct: 17  IDPEICIRCNTCEATCPVDAITHDDN 42


>gi|227326453|ref|ZP_03830477.1| electron transport complex protein RnfC [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 684

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 32/103 (31%), Gaps = 12/103 (11%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ CI C  C   CPA  +  +       G       +  +  CI CG C   CP    
Sbjct: 373 EEQSCIRCSKCADACPAG-LLPQQLYWFSRGQEHEKARNHHLFDCIECGACAYVCP---- 427

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161
               N       RQE    K  +    +  +      +  D+ 
Sbjct: 428 ---SNIPLVQYYRQE----KAEIRAIDEEAQRAAQAKVRFDAK 463


>gi|227111414|ref|ZP_03825070.1| electron transport complex protein RnfC [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 753

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 32/103 (31%), Gaps = 12/103 (11%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ CI C  C   CPA  +  +       G       +  +  CI CG C   CP    
Sbjct: 373 EEQSCIRCSKCADACPAG-LLPQQLYWFSRGQEHEKARNHHLFDCIECGACAYVCP---- 427

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161
               N       RQE    K  +    +  +      +  D+ 
Sbjct: 428 ---SNIPLVQYYRQE----KAEIRAIDEEAQRAAQAKVRFDAK 463


>gi|167755792|ref|ZP_02427919.1| hypothetical protein CLORAM_01307 [Clostridium ramosum DSM 1402]
 gi|237734759|ref|ZP_04565240.1| NADH dehydrogenase [Mollicutes bacterium D7]
 gi|167704731|gb|EDS19310.1| hypothetical protein CLORAM_01307 [Clostridium ramosum DSM 1402]
 gi|229382087|gb|EEO32178.1| NADH dehydrogenase [Coprobacillus sp. D7]
          Length = 599

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 13/93 (13%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
           + F+ +   +   +K            L +Y   E++C  C LC   CP  AI+ E G  
Sbjct: 517 HQFRDEYIAHIVDKKCPAGVC----KELLQYEIDEDKCRKCGLCAKQCPVGAISGELGKV 572

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                     Y ID  KCI CG C +AC  + I
Sbjct: 573 P---------YVIDQEKCIKCGQCIKACHFNVI 596


>gi|218779911|ref|YP_002431229.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761295|gb|ACL03761.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 363

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 10/67 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E C AC  CE  C   AIT +                +D  +CI CGLC   CP +AI
Sbjct: 274 DAELCAACGDCEERCQVLAITYDDDGIAV----------VDEDRCIGCGLCVTTCPTEAI 323

Query: 119 VEGPNFE 125
              P  E
Sbjct: 324 TLKPVSE 330


>gi|172061288|ref|YP_001808940.1| ferredoxin [Burkholderia ambifaria MC40-6]
 gi|171993805|gb|ACB64724.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           ambifaria MC40-6]
          Length = 341

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 22/66 (33%), Gaps = 10/66 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C LC   CP  AI                 + I    C  C LC   CPVD
Sbjct: 113 FIDESLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVESLCTGCDLCVPPCPVD 162

Query: 117 AIVEGP 122
            I   P
Sbjct: 163 CIAMVP 168


>gi|67968340|dbj|BAE00240.1| NADH dehydrogenase subunit I [Selaginella uncinata]
          Length = 185

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 43/120 (35%), Gaps = 5/120 (4%)

Query: 18  GAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA 77
             F +   +  +   TI YP+EK   S RFRG              IA +    + P   
Sbjct: 21  RGFTVTPDHMDRLPITIQYPYEKSIPSERFRGRIHFEFDKR-----IAREARVRVRPTHL 75

Query: 78  ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
             ++ G       +R+  + ID     + G   E  P +       +E  T  R EL +D
Sbjct: 76  PVVDRGLGEGMRRKRSRSHSIDPGARTFRGNRAEYRPTNRSPMTGEYEPPTHDRHELNHD 135


>gi|117927911|ref|YP_872462.1| putative glutamate synthase (NADPH) small subunit [Acidothermus
           cellulolyticus 11B]
 gi|117648374|gb|ABK52476.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Acidothermus
           cellulolyticus 11B]
          Length = 543

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            RC +C  C       A+  ++     +       Y ID+  C  CGLC   CPV AI  
Sbjct: 477 RRCFSCGNCFQCDNCYAVCPDAAVLKVESGHG---YAIDLDYCKGCGLCVAECPVGAIRT 533

Query: 121 GPN 123
            P 
Sbjct: 534 VPE 536


>gi|197335123|ref|YP_002156163.1| formate hydrogenlyase subunit 6 [Vibrio fischeri MJ11]
 gi|197316613|gb|ACH66060.1| formate hydrogenlyase subunit 6 [Vibrio fischeri MJ11]
          Length = 558

 Score = 51.6 bits (122), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 10/84 (11%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
              + C  C  C A+CP +A+  +           +         C+ CGLC  ACP   
Sbjct: 420 CETKDCTLCMGCVAVCPTRALHSDPD---------SPTLKFIEQDCVQCGLCVSACPEKV 470

Query: 118 IVEGPNFEFATETRQE-LYYDKER 140
           +       +  ETRQE     KE 
Sbjct: 471 LSMKVQMNWNQETRQETQIVHKED 494



 Score = 40.1 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 12/82 (14%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           C+ C   CPA A+T E   +            I+   C   G C  ACP +AI     + 
Sbjct: 189 CERCVDACPAGALTSEGSDQTGH------HIQINPYLCQGVGTCATACPTEAIS----YA 238

Query: 126 FATETRQELYYDKERLLNNGDR 147
                + + +    RLL N  +
Sbjct: 239 LPEAEKTQNFAT--RLLANYKK 258


>gi|308049505|ref|YP_003913071.1| formate dehydrogenase, alpha subunit [Ferrimonas balearica DSM
           9799]
 gi|307631695|gb|ADN75997.1| formate dehydrogenase, alpha subunit [Ferrimonas balearica DSM
           9799]
          Length = 1366

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 28/86 (32%), Gaps = 3/86 (3%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---I 98
               +F  + +         RCI+C  C   C  Q +             R    D   +
Sbjct: 595 PAPQKFAVDESSPFIRLDRNRCISCGQCVQACREQGVHNVLRFPDGAPMCRVQVADGELM 654

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNF 124
               C  CG+C +ACPV AI      
Sbjct: 655 ATSDCAQCGMCIQACPVGAITAKTQH 680



 Score = 38.2 bits (87), Expect = 0.43,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 17/48 (35%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
             C  C +C   CP  AIT ++  +            I     + CGL
Sbjct: 657 SDCAQCGMCIQACPVGAITAKTQHQHGQKDEYKKVNTICTYCGVGCGL 704


>gi|126732920|ref|ZP_01748710.1| iron-sulfur cluster-binding protein [Sagittula stellata E-37]
 gi|126706626|gb|EBA05701.1| iron-sulfur cluster-binding protein [Sagittula stellata E-37]
          Length = 649

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 13/102 (12%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E             L      ++ C  C  C ++CP+ A+         +  R  +R+  
Sbjct: 483 ETLPLPEGAPYGAVLV----DQDACTLCLSCVSLCPSGAL-------GDNPDRPELRFQ- 530

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140
               C+ CGLC   CP +AI   P  +       +    +E 
Sbjct: 531 -EDACLQCGLCANVCPEEAISLQPQLDLTPAALTQRVLKEEE 571



 Score = 40.1 bits (92), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 11/55 (20%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             C  C  +CP  AIT +                +D + C  CG C   CP  AI
Sbjct: 277 TGCTRCLDLCPTGAITPDGE-----------HVSVDPLICAGCGACSAVCPSGAI 320


>gi|220932902|ref|YP_002509810.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Halothermothrix orenii H 168]
 gi|219994212|gb|ACL70815.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Halothermothrix orenii H 168]
          Length = 370

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 25/65 (38%), Gaps = 11/65 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            EE+C  C+ C   CP  AITI                 ID   CI CG C   CP DAI
Sbjct: 192 DEEKCEKCRKCVKFCPENAITINKE-----------TSTIDQNLCIGCGECVVTCPTDAI 240

Query: 119 VEGPN 123
                
Sbjct: 241 KIQWE 245



 Score = 35.1 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 14/37 (37%)

Query: 87  HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                  V  +ID  KC  C  C + CP +AI     
Sbjct: 180 KQMMHSDVLPEIDEEKCEKCRKCVKFCPENAITINKE 216


>gi|115352416|ref|YP_774255.1| ferredoxin [Burkholderia ambifaria AMMD]
 gi|115282404|gb|ABI87921.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           ambifaria AMMD]
          Length = 339

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 22/66 (33%), Gaps = 10/66 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C LC   CP  AI                 + I    C  C LC   CPVD
Sbjct: 113 FIDESLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVESLCTGCDLCVPPCPVD 162

Query: 117 AIVEGP 122
            I   P
Sbjct: 163 CIAMVP 168


>gi|326391290|ref|ZP_08212831.1| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter ethanolicus
           JW 200]
 gi|325992685|gb|EGD51136.1| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter ethanolicus
           JW 200]
          Length = 291

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 42/110 (38%), Gaps = 22/110 (20%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE-------ERCIACKLCEAIC 73
              L    K K   +   E  + +   +GE   ++   G+       ++CI C LCE +C
Sbjct: 19  ATTLSTIIKNKIMADCDVEAPNLNIVLQGEIIEKQDFYGKETAVIDKDKCIECGLCERLC 78

Query: 74  PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
              AI+                ++++   C  CGLC   CPV+AI     
Sbjct: 79  RFDAISN---------------FEVNPYYCEGCGLCMYKCPVEAIKLVEE 113


>gi|317489291|ref|ZP_07947808.1| indolepyruvate ferredoxin oxidoreductase [Eggerthella sp.
           1_3_56FAA]
 gi|325832214|ref|ZP_08165213.1| putative indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Eggerthella sp. HGA1]
 gi|316911692|gb|EFV33284.1| indolepyruvate ferredoxin oxidoreductase [Eggerthella sp.
           1_3_56FAA]
 gi|325486050|gb|EGC88504.1| putative indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Eggerthella sp. HGA1]
          Length = 767

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 2/73 (2%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E C  CK C        I  ++  R     +R   + +D   C  CGLC + CP DA+
Sbjct: 687 DAETCTGCKKCITEIGCPGIGFDADARGPRSKQRGQAF-VDPSLCNGCGLCVQVCPFDAL 745

Query: 119 VEG-PNFEFATET 130
               P  + + ET
Sbjct: 746 SMTEPQTDVSRET 758


>gi|309390025|gb|ADO77905.1| Ferredoxin hydrogenase [Halanaerobium praevalens DSM 2228]
          Length = 501

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 6/66 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQEA 112
            +E+CI C  C+  CP +AI     P                R  I+   C+ CG C  A
Sbjct: 149 DQEKCINCGKCKKACPYEAIVNYERPCAEACGVDAIESDEYQRAKINQNNCVSCGQCIIA 208

Query: 113 CPVDAI 118
           CP  AI
Sbjct: 209 CPFGAI 214



 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 8/68 (11%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-----IDMIKCIYCGLCQEACPVDA 117
           C  C               + P         +  +     ID  KCI CG C++ACP +A
Sbjct: 108 CEKCPTNAHFVTNNCRKCLAHPCSIVCPVDAITIEEKAAVIDQEKCINCGKCKKACPYEA 167

Query: 118 IVEGPNFE 125
           IV   N+E
Sbjct: 168 IV---NYE 172


>gi|302336924|ref|YP_003802130.1| dihydroorotate dehydrogenase [Spirochaeta smaragdinae DSM 11293]
 gi|301634109|gb|ADK79536.1| dihydroorotate dehydrogenase family protein [Spirochaeta
           smaragdinae DSM 11293]
          Length = 834

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 15/96 (15%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
           +P  +   S       A R    G   CI C  C A+CP  A T++              
Sbjct: 753 FPEVETGLSEDAARREAARCMHCG---CINCLRCVAVCPYNARTLD-----------FPI 798

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
             +D   C  CG C   CP  A+      E A E+R
Sbjct: 799 MSVDRELCRNCGACVSVCPTGALTATVVDELA-ESR 833


>gi|225028997|ref|ZP_03718189.1| hypothetical protein EUBHAL_03289 [Eubacterium hallii DSM 3353]
 gi|224953695|gb|EEG34904.1| hypothetical protein EUBHAL_03289 [Eubacterium hallii DSM 3353]
          Length = 506

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 6/66 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112
            ++ CI C  C  +C   AI ++  P       + +  D      ID  KC+ CG+C   
Sbjct: 149 DQDACIKCGRCATVCSYNAIIVQERPCAKACGMKAITSDENGKATIDYDKCVSCGMCLVN 208

Query: 113 CPVDAI 118
           CP  AI
Sbjct: 209 CPFGAI 214



 Score = 37.4 bits (85), Expect = 0.68,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 21/63 (33%), Gaps = 7/63 (11%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-------IDMIKCIYCGLCQEACPV 115
           C AC   +           + P      ++ +  D       ID   CI CG C   C  
Sbjct: 106 CNACDEKKVHVTDGCQGCLAHPCMEVCPKKAISLDRVTGKSIIDQDACIKCGRCATVCSY 165

Query: 116 DAI 118
           +AI
Sbjct: 166 NAI 168


>gi|167752987|ref|ZP_02425114.1| hypothetical protein ALIPUT_01250 [Alistipes putredinis DSM 17216]
 gi|167659301|gb|EDS03431.1| hypothetical protein ALIPUT_01250 [Alistipes putredinis DSM 17216]
          Length = 271

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 6/68 (8%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112
             + CI+C +C + CP  AI     P       + +  D      ID  KCIYCG C  +
Sbjct: 142 NHDLCISCGICHSNCPYHAIVYMPVPCEEACPVKAITKDERGVEHIDESKCIYCGKCINS 201

Query: 113 CPVDAIVE 120
           CP  AI E
Sbjct: 202 CPFGAIFE 209



 Score = 34.3 bits (77), Expect = 6.0,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 22/69 (31%), Gaps = 8/69 (11%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           +        C  C      C          P+      R  +  I+   CI CG+C   C
Sbjct: 105 QTNYEITNLCKGC--VARACATNC------PKNAIEFNRAGKAVINHDLCISCGICHSNC 156

Query: 114 PVDAIVEGP 122
           P  AIV  P
Sbjct: 157 PYHAIVYMP 165


>gi|16761464|ref|NP_457081.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|16765870|ref|NP_461485.1| anaerobic sulfide reductase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|29140839|ref|NP_804181.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|62181114|ref|YP_217531.1| anaerobic sulfide reductase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|167549421|ref|ZP_02343180.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|167992677|ref|ZP_02573773.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168232125|ref|ZP_02657183.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168238290|ref|ZP_02663348.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|168243336|ref|ZP_02668268.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168466692|ref|ZP_02700546.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|168821468|ref|ZP_02833468.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194444809|ref|YP_002041812.1| sulfite reductase subunit C [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194449446|ref|YP_002046611.1| sulfite reductase subunit C [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194471798|ref|ZP_03077782.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194735811|ref|YP_002115613.1| sulfite reductase subunit C [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197249765|ref|YP_002147505.1| sulfite reductase subunit C [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197263863|ref|ZP_03163937.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|198244708|ref|YP_002216616.1| sulfite reductase subunit C [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|200388883|ref|ZP_03215495.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204929566|ref|ZP_03220640.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205353648|ref|YP_002227449.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207857958|ref|YP_002244609.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|213163624|ref|ZP_03349334.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213425304|ref|ZP_03358054.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213583918|ref|ZP_03365744.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
 gi|213618813|ref|ZP_03372639.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213646418|ref|ZP_03376471.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|224582910|ref|YP_002636708.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238912671|ref|ZP_04656508.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|289825397|ref|ZP_06544634.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|60391778|sp|P0A1Y2|ASRC_SALTY RecName: Full=Anaerobic sulfite reductase subunit C
 gi|60391779|sp|P0A1Y3|ASRC_SALTI RecName: Full=Anaerobic sulfite reductase subunit C
 gi|25387614|pir||AE0825 anaerobic sulfite reductase chain C (EC 1.8.1.-) [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16421096|gb|AAL21444.1| anaerobic sulfide reductase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16503764|emb|CAD02753.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29136464|gb|AAO68030.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|62128747|gb|AAX66450.1| anaerobic sulfide reductase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|194403472|gb|ACF63694.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194407750|gb|ACF67969.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194458162|gb|EDX47001.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194711313|gb|ACF90534.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|195630754|gb|EDX49346.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|197213468|gb|ACH50865.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197242118|gb|EDY24738.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197288804|gb|EDY28177.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|197939224|gb|ACH76557.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|199605981|gb|EDZ04526.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204321285|gb|EDZ06485.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205273429|emb|CAR38405.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205325275|gb|EDZ13114.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205329116|gb|EDZ15880.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205333579|gb|EDZ20343.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205337685|gb|EDZ24449.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205341941|gb|EDZ28705.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|206709761|emb|CAR34113.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224467437|gb|ACN45267.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|261247746|emb|CBG25574.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267994674|gb|ACY89559.1| anaerobic sulfide reductase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301159099|emb|CBW18613.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312913539|dbj|BAJ37513.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320087048|emb|CBY96817.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321222746|gb|EFX47817.1| Anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|322613320|gb|EFY10262.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322620476|gb|EFY17341.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625056|gb|EFY21885.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322629500|gb|EFY26276.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322633887|gb|EFY30626.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322635493|gb|EFY32204.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322639831|gb|EFY36510.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322644283|gb|EFY40827.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322652250|gb|EFY48607.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322654842|gb|EFY51159.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658230|gb|EFY54496.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322669679|gb|EFY65825.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322673314|gb|EFY69419.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322674897|gb|EFY70984.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322682920|gb|EFY78938.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322685581|gb|EFY81576.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|322715604|gb|EFZ07175.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323130880|gb|ADX18310.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|323194692|gb|EFZ79882.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323200376|gb|EFZ85457.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323201276|gb|EFZ86343.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323208346|gb|EFZ93286.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323211578|gb|EFZ96416.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323216010|gb|EGA00742.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221917|gb|EGA06311.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323225602|gb|EGA09829.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323229319|gb|EGA13443.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323235366|gb|EGA19450.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323237448|gb|EGA21511.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323245203|gb|EGA29204.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323248777|gb|EGA32704.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323254043|gb|EGA37864.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323254908|gb|EGA38700.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323262013|gb|EGA45578.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323267797|gb|EGA51278.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323269644|gb|EGA53096.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326624371|gb|EGE30716.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326628750|gb|EGE35093.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
 gi|332989477|gb|AEF08460.1| anaerobic sulfide reductase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 337

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 29/94 (30%), Gaps = 8/94 (8%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
               +  P +    S    G   + +     +RCI C  C   C   A+   +       
Sbjct: 147 KTVIVGCPNDCAKASMADLGIIGVAKMRFTADRCIGCGACVKACSHHAVGCLALKNGKAV 206

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                    +   CI CG C  ACP  A    P+
Sbjct: 207 K--------EESACIGCGECVLACPTLAWQRKPD 232


>gi|308388428|gb|ADO30748.1| putative ferredoxin [Neisseria meningitidis alpha710]
          Length = 279

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CPA AI               + + +   +C  CGLC   CPVD I
Sbjct: 75  DETACIGCTACIRACPADAIMGAGK----------LMHTVIADECTGCGLCVAPCPVDCI 124

Query: 119 VEGP 122
              P
Sbjct: 125 HMQP 128



 Score = 35.1 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 12/23 (52%), Positives = 13/23 (56%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIV 119
            ID   CI C  C  ACP DAI+
Sbjct: 73  RIDETACIGCTACIRACPADAIM 95


>gi|296313314|ref|ZP_06863255.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           polysaccharea ATCC 43768]
 gi|296840194|gb|EFH24132.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           polysaccharea ATCC 43768]
          Length = 279

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CPA AI               + + +   +C  CGLC   CPVD I
Sbjct: 75  DETACIGCTACIRACPADAIMGAGK----------LMHTVIADECTGCGLCVAPCPVDCI 124

Query: 119 VEGP 122
              P
Sbjct: 125 HMQP 128



 Score = 35.1 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 12/23 (52%), Positives = 13/23 (56%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIV 119
            ID   CI C  C  ACP DAI+
Sbjct: 73  RIDETACIGCTACIRACPADAIM 95


>gi|261391743|emb|CAX49192.1| putative ferredoxin [Neisseria meningitidis 8013]
 gi|325197493|gb|ADY92949.1| iron-sulfur cluster-binding protein [Neisseria meningitidis G2136]
          Length = 279

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CPA AI               + + +   +C  CGLC   CPVD I
Sbjct: 75  DETACIGCTACIRACPADAIMGAGK----------LMHTVIADECTGCGLCVAPCPVDCI 124

Query: 119 VEGP 122
              P
Sbjct: 125 HMQP 128



 Score = 35.1 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 12/23 (52%), Positives = 13/23 (56%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIV 119
            ID   CI C  C  ACP DAI+
Sbjct: 73  RIDETACIGCTACIRACPADAIM 95


>gi|254673479|emb|CBA08875.1| putative ferredoxin [Neisseria meningitidis alpha275]
          Length = 279

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CPA AI               + + +   +C  CGLC   CPVD I
Sbjct: 75  DESACIGCTACIRACPADAIMGAGK----------LMHTVIADECTGCGLCVAPCPVDCI 124

Query: 119 VEGP 122
              P
Sbjct: 125 HMQP 128



 Score = 35.5 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 12/23 (52%), Positives = 13/23 (56%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIV 119
            ID   CI C  C  ACP DAI+
Sbjct: 73  RIDESACIGCTACIRACPADAIM 95


>gi|257126678|ref|YP_003164792.1| electron transport complex, RnfABCDGE type, C subunit [Leptotrichia
           buccalis C-1013-b]
 gi|257050617|gb|ACV39801.1| electron transport complex, RnfABCDGE type, C subunit [Leptotrichia
           buccalis C-1013-b]
          Length = 458

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 1/75 (1%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           +        G   L +     E CI+C  C   CP   +  E       G +       +
Sbjct: 362 RIPVIKGTSGILFLSKEEIERESCISCGYCVEACPMNLMPFEFADYYEKG-KYEKMIKAN 420

Query: 100 MIKCIYCGLCQEACP 114
           +  CI CG C+  CP
Sbjct: 421 IQNCIECGACEFVCP 435



 Score = 39.3 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 17/61 (27%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNI 156
           +I+   CI CG C EACP++ +     FEFA        Y+K        ++E  I  NI
Sbjct: 379 EIERESCISCGYCVEACPMNLMP----FEFADY------YEK-------GKYEKMIKANI 421

Query: 157 V 157
            
Sbjct: 422 Q 422


>gi|224369370|ref|YP_002603534.1| HdrA4 [Desulfobacterium autotrophicum HRM2]
 gi|223692087|gb|ACN15370.1| HdrA4 [Desulfobacterium autotrophicum HRM2]
          Length = 1161

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 27/88 (30%), Gaps = 7/88 (7%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPA-------QAITIESGPRCHDGTRRTVRY 96
              +              RC  C LC  +CP          ++                Y
Sbjct: 99  PGNYHATLESPVPIVDPNRCTGCNLCAQVCPVSIDDPFNHGLSRTKAIYLPVPHAVPNIY 158

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNF 124
            IDM  C  CG C++ CP DAI    + 
Sbjct: 159 TIDMNHCTLCGECEQTCPFDAITLPADH 186



 Score = 41.2 bits (95), Expect = 0.053,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 17/51 (33%), Gaps = 9/51 (17%)

Query: 63   CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
            C  C  C   C   A T++             R  ID I C  CG C   C
Sbjct: 1097 CSVCGRCIDACAFGARTLDPDTN---------RIKIDPIICQGCGACASVC 1138



 Score = 35.1 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 16/35 (45%)

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           E  P  +  T  +    +D  +C  C LC + CPV
Sbjct: 96  EGEPGNYHATLESPVPIVDPNRCTGCNLCAQVCPV 130



 Score = 33.5 bits (75), Expect = 9.9,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 21/72 (29%), Gaps = 4/72 (5%)

Query: 31  KTTINYPFE----KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC 86
             +I+ PF     +               Y      C  C  CE  CP  AIT+ +  R 
Sbjct: 129 PVSIDDPFNHGLSRTKAIYLPVPHAVPNIYTIDMNHCTLCGECEQTCPFDAITLPADHRK 188

Query: 87  HDGTRRTVRYDI 98
           +          I
Sbjct: 189 NFKILVVDDEQI 200


>gi|121634081|ref|YP_974326.1| putative ferredoxin [Neisseria meningitidis FAM18]
 gi|120865787|emb|CAM09516.1| putative ferredoxin [Neisseria meningitidis FAM18]
 gi|325133026|gb|EGC55699.1| iron-sulfur cluster-binding protein [Neisseria meningitidis M6190]
 gi|325139098|gb|EGC61644.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
           ES14902]
          Length = 279

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CPA AI               + + +   +C  CGLC   CPVD I
Sbjct: 75  DETACIGCTACIRACPADAIMGAGK----------LMHTVIADECTGCGLCVAPCPVDCI 124

Query: 119 VEGP 122
              P
Sbjct: 125 HMQP 128



 Score = 35.1 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 12/23 (52%), Positives = 13/23 (56%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIV 119
            ID   CI C  C  ACP DAI+
Sbjct: 73  RIDETACIGCTACIRACPADAIM 95


>gi|160878251|ref|YP_001557219.1| ferredoxin hydrogenase [Clostridium phytofermentans ISDg]
 gi|160426917|gb|ABX40480.1| Ferredoxin hydrogenase [Clostridium phytofermentans ISDg]
          Length = 484

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110
                +C  C +C + CP  AI     P         +  D      ID  KCI CG C 
Sbjct: 126 HIDPAKCKECGMCASACPYNAIADLKRPCKKSCPVDAISMDENNIVVIDEEKCINCGQCI 185

Query: 111 EACPVDAI 118
             CP  AI
Sbjct: 186 NNCPFGAI 193



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 20/61 (32%), Gaps = 5/61 (8%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCIYCGLCQEACPVDA 117
           C  C +   +                   +       R  ID  KC  CG+C  ACP +A
Sbjct: 87  CEECPITRFLVTDNCQKCMGKRCQKACNFQAISMSHDRAHIDPAKCKECGMCASACPYNA 146

Query: 118 I 118
           I
Sbjct: 147 I 147


>gi|29828378|ref|NP_823012.1| NADH dehydrogenase I chain G [Streptomyces avermitilis MA-4680]
 gi|29605481|dbj|BAC69547.1| putative NADH dehydrogenase I chain G (complex I) [Streptomyces
           avermitilis MA-4680]
          Length = 286

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 4/75 (5%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM----IKCIYCGLCQE 111
           Y    ++CI C  C   C  Q     +      G    +  + D       C+YCG C E
Sbjct: 145 YVRDYDKCILCYKCVDACGDQWQNTFAISVVGRGFDARIAVEHDAPLTDSACVYCGNCVE 204

Query: 112 ACPVDAIVEGPNFEF 126
            CP  A+     F+ 
Sbjct: 205 VCPTGALSFKSEFDM 219


>gi|167758102|ref|ZP_02430229.1| hypothetical protein CLOSCI_00440 [Clostridium scindens ATCC 35704]
 gi|167663999|gb|EDS08129.1| hypothetical protein CLOSCI_00440 [Clostridium scindens ATCC 35704]
          Length = 503

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQ 110
              +++CI C  C+++CP  AI+ +  P                R  I+  KC+ CG+C 
Sbjct: 148 YIDQDKCIKCGKCKSVCPYDAISKKERPCQKACGVGAIESDNMGRAHINNDKCVSCGMCM 207

Query: 111 EACPVDAI 118
            +CP  AI
Sbjct: 208 VSCPFGAI 215



 Score = 41.6 bits (96), Expect = 0.039,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 13/64 (20%)

Query: 57  PNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 C  C    C  +CP  AI++  G              ID  KCI CG C+  CP
Sbjct: 117 YEVSNMCKGCLAHPCIEVCPKDAISMVGGKSY-----------IDQDKCIKCGKCKSVCP 165

Query: 115 VDAI 118
            DAI
Sbjct: 166 YDAI 169


>gi|158522308|ref|YP_001530178.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfococcus oleovorans Hxd3]
 gi|158511134|gb|ABW68101.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus
           oleovorans Hxd3]
          Length = 378

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 8/63 (12%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C A C   AI +              +  I+  KC+ CG C   CP  ++  
Sbjct: 200 KTCIGCGDCVAHCAHGAIRLVKEGE--------KKALINEEKCVGCGECIVVCPTGSVQI 251

Query: 121 GPN 123
             N
Sbjct: 252 QWN 254


>gi|104780426|ref|YP_606924.1| lectron transport complex protein RnfB [Pseudomonas entomophila
           L48]
 gi|95109413|emb|CAK14113.1| putative lectron transport complex protein RnfB [Pseudomonas
           entomophila L48]
          Length = 254

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 30/84 (35%), Gaps = 10/84 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
                    RG+   +     E  CI C  C   CP  AI   S           + + +
Sbjct: 57  VPIIAPDTTRGQAPAQVASIREAECIGCTKCIQACPVDAIVGASK----------LMHTV 106

Query: 99  DMIKCIYCGLCQEACPVDAIVEGP 122
             I+C  C LC  ACPVD I   P
Sbjct: 107 IAIECTGCDLCLPACPVDCIDMRP 130


>gi|116748266|ref|YP_844953.1| response regulator receiver modulated FAD-dependent pyridine
           nucleotide-disulfide oxidoreductase [Syntrophobacter
           fumaroxidans MPOB]
 gi|116697330|gb|ABK16518.1| response regulator receiver modulated FAD-dependent pyridine
           nucleotide-disulphide oxidoreductase [Syntrophobacter
           fumaroxidans MPOB]
          Length = 1139

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 27/84 (32%), Gaps = 7/84 (8%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR-------Y 96
             +F      R      ERC  C  C  +CP +     +                    Y
Sbjct: 99  PGKFVATLRYRPSLIDPERCNGCGECTRVCPVEVPDEFNAGLATRKAVYLPVPHNLPNSY 158

Query: 97  DIDMIKCIYCGLCQEACPVDAIVE 120
            ID   C +CG CQ ACP  AI  
Sbjct: 159 VIDTDACNHCGACQNACPTGAIDL 182



 Score = 42.0 bits (97), Expect = 0.024,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 19/58 (32%), Gaps = 9/58 (15%)

Query: 60   EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
               C  C+ C   CP  A   +             R  +D   C  CG C  ACP  A
Sbjct: 1071 HSLCSLCERCVVACPFHARWYDEEEE---------RIVVDEFVCQGCGACSAACPNGA 1119


>gi|332704183|ref|ZP_08424271.1| Glutamate synthase (NADPH) [Desulfovibrio africanus str. Walvis
           Bay]
 gi|332554332|gb|EGJ51376.1| Glutamate synthase (NADPH) [Desulfovibrio africanus str. Walvis
           Bay]
          Length = 507

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 12/83 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +E CI C++C   C   A   +                 D  KC+ C  C+  CP   +
Sbjct: 18  DKEACINCEVCVRQCSYGAHFWDD---------VRKSVRHDSSKCVGCHRCEAFCPTACL 68

Query: 119 VEGPNFEFATETRQELYYDKERL 141
                    TE R+   ++ + L
Sbjct: 69  TIRH---KPTEFRENAVWNPKFL 88


>gi|320100963|ref|YP_004176555.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Desulfurococcus mucosus DSM 2162]
 gi|319753315|gb|ADV65073.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Desulfurococcus mucosus DSM 2162]
          Length = 637

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 26/71 (36%), Gaps = 9/71 (12%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R    L  Y   E++C  C  C  +    AI I +G R            I    C  CG
Sbjct: 562 RRRVVLPVYTVIEDKCTGCNACINLTACPAIVIPTGSRKPV---------ILEELCAGCG 612

Query: 108 LCQEACPVDAI 118
           LC   CP  AI
Sbjct: 613 LCASICPFKAI 623


>gi|319411308|emb|CBY91719.1| putative ferredoxin [Neisseria meningitidis WUE 2594]
 gi|325130942|gb|EGC53669.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
           OX99.30304]
 gi|325135016|gb|EGC57644.1| iron-sulfur cluster-binding protein [Neisseria meningitidis M13399]
 gi|325137038|gb|EGC59634.1| iron-sulfur cluster-binding protein [Neisseria meningitidis M0579]
 gi|325202960|gb|ADY98414.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
           M01-240149]
 gi|325207242|gb|ADZ02694.1| iron-sulfur cluster-binding protein [Neisseria meningitidis
           NZ-05/33]
          Length = 279

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CPA AI               + + +   +C  CGLC   CPVD I
Sbjct: 75  DETACIGCTACIRACPADAIMGAGK----------LMHTVIADECTGCGLCVAPCPVDCI 124

Query: 119 VEGP 122
              P
Sbjct: 125 HMQP 128



 Score = 35.1 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 12/23 (52%), Positives = 13/23 (56%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIV 119
            ID   CI C  C  ACP DAI+
Sbjct: 73  RIDETACIGCTACIRACPADAIM 95


>gi|296449690|ref|ZP_06891460.1| periplasmic hydrogenase 1 [Clostridium difficile NAP08]
 gi|296877993|ref|ZP_06902012.1| periplasmic hydrogenase 1 [Clostridium difficile NAP07]
 gi|296261414|gb|EFH08239.1| periplasmic hydrogenase 1 [Clostridium difficile NAP08]
 gi|296431061|gb|EFH16889.1| periplasmic hydrogenase 1 [Clostridium difficile NAP07]
          Length = 509

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 7/71 (9%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT-------RRTVRYDIDMIKCIYCG 107
                 E C AC +C+  C   AI+    P             R  ++  I   KC+ CG
Sbjct: 147 MAYINHELCKACGMCKKACQYDAISEVVRPCKSVCPTNALGFDRENMKAMIHEEKCLNCG 206

Query: 108 LCQEACPVDAI 118
            C  ACP  AI
Sbjct: 207 ACMSACPFGAI 217


>gi|288561338|ref|YP_003424824.1| glutamate synthase alpha subunit GltA [Methanobrevibacter
           ruminantium M1]
 gi|288544048|gb|ADC47932.1| glutamate synthase alpha subunit GltA [Methanobrevibacter
           ruminantium M1]
          Length = 495

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 10/68 (14%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                +  C  C  C + CP     + +               I    C+ C +C+E CP
Sbjct: 26  CDNPNKSACKNCYSCYSNCPHGVYEVINDEPLP----------IHQENCVGCKICEEMCP 75

Query: 115 VDAIVEGP 122
             AI   P
Sbjct: 76  THAIYVRP 83


>gi|170726904|ref|YP_001760930.1| electron transport complex protein RnfC [Shewanella woodyi ATCC
           51908]
 gi|169812251|gb|ACA86835.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella
           woodyi ATCC 51908]
          Length = 784

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 3/102 (2%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            CI C  C  +CPAQ +  +                 ++  CI CG C   CP   I   
Sbjct: 383 PCIRCGECAVVCPAQ-LLPQQLFWHSKAQEYDKAVSYNLNDCIECGCCSYVCP-SNIPLV 440

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
             +  A    +    +K++      R+E    + +  +   R
Sbjct: 441 EYYRVAKSAVKNEIEEKKQAELAKQRFELR-TQRLEDEKLAR 481


>gi|91202656|emb|CAJ72295.1| similar to molybdopterin oxidoreductase, molybdopterin-containing
           subunit/ NuoG subunit of NADH dehydrogenase I
           [Candidatus Kuenenia stuttgartiensis]
          Length = 896

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 5/81 (6%)

Query: 57  PNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEAC 113
                +CI C  C  IC   Q   + +       TR +  ++  M    C++CG C   C
Sbjct: 140 YRDMNKCIMCGKCVRICDEVQGQHVWTFSDRGIKTRVSTAFEKSMQDGGCVFCGHCVSVC 199

Query: 114 PVDAIVEGPNFEFA--TETRQ 132
           PV A+++ P  + A   ETR+
Sbjct: 200 PVGALMDKPVMKKARSWETRK 220


>gi|11498785|ref|NP_070014.1| iron-sulfur cluster binding protein [Archaeoglobus fulgidus DSM
           4304]
 gi|2649398|gb|AAB90058.1| iron-sulfur cluster binding protein [Archaeoglobus fulgidus DSM
           4304]
          Length = 131

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 10/68 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L      +E+C+ C  C +ICP +AI I    R            I+  KC++CG C + 
Sbjct: 72  LEAVQKDDEKCVHCGACVSICPTEAIYINGDKRVA----------INTEKCVHCGSCVKV 121

Query: 113 CPVDAIVE 120
           CP  A+  
Sbjct: 122 CPTRALSL 129


>gi|304389020|ref|ZP_07371066.1| iron-sulfur cluster-binding protein [Neisseria meningitidis ATCC
           13091]
 gi|304337001|gb|EFM03189.1| iron-sulfur cluster-binding protein [Neisseria meningitidis ATCC
           13091]
          Length = 279

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CPA AI               + + +   +C  CGLC   CPVD I
Sbjct: 75  DETACIGCTACIRACPADAIMGAGK----------LMHTVIADECTGCGLCVAPCPVDCI 124

Query: 119 VEGP 122
              P
Sbjct: 125 HMQP 128



 Score = 35.1 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 12/23 (52%), Positives = 13/23 (56%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIV 119
            ID   CI C  C  ACP DAI+
Sbjct: 73  RIDETACIGCTACIRACPADAIM 95


>gi|303240081|ref|ZP_07326602.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Acetivibrio
           cellulolyticus CD2]
 gi|302592350|gb|EFL62077.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Acetivibrio
           cellulolyticus CD2]
          Length = 1181

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 16/101 (15%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES--------------- 82
           FE G+++   RG           ++C+ C +C  +C    I                   
Sbjct: 673 FEMGASAYEKRGTAVNVPQW-DPQKCVQCTMCSFVCSHATIRPFMLSEDEVKAAPSNIKL 731

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                  +       +  + C+ CG C   CP  AI   P 
Sbjct: 732 ADSKPKASEYKFTMSVTPLDCMGCGECITVCPAKAIEMVPQ 772


>gi|254670133|emb|CBA05130.1| putative ferredoxin [Neisseria meningitidis alpha153]
          Length = 279

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CPA AI               + + +   +C  CGLC   CPVD I
Sbjct: 75  DETACIGCTACIRACPADAIMGAGK----------LMHTVIADECTGCGLCVAPCPVDCI 124

Query: 119 VEGP 122
              P
Sbjct: 125 HMQP 128



 Score = 35.1 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 12/23 (52%), Positives = 13/23 (56%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIV 119
            ID   CI C  C  ACP DAI+
Sbjct: 73  RIDETACIGCTACIRACPADAIM 95


>gi|238917328|ref|YP_002930845.1| ferredoxin hydrogenase [Eubacterium eligens ATCC 27750]
 gi|238872688|gb|ACR72398.1| ferredoxin hydrogenase [Eubacterium eligens ATCC 27750]
          Length = 489

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 26/68 (38%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110
               ++C  C +C   CP  AI     P         +  D      ID  KCI CG C 
Sbjct: 128 YIDPDKCKECGMCAKACPYNAIADLIRPCKKICPANAITMDENGICEIDENKCIQCGQCI 187

Query: 111 EACPVDAI 118
            ACP  AI
Sbjct: 188 HACPFGAI 195


>gi|225175969|ref|ZP_03729961.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168557|gb|EEG77359.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dethiobacter
           alkaliphilus AHT 1]
          Length = 369

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 23/63 (36%), Gaps = 11/63 (17%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C  C  C   CPA AI I                +ID  KCI CG C   CP  AI    
Sbjct: 196 CKVCSTCLKWCPADAILIMEETA-----------EIDHDKCIGCGECTVVCPTRAIKIQW 244

Query: 123 NFE 125
             E
Sbjct: 245 KSE 247


>gi|225405722|ref|ZP_03760911.1| hypothetical protein CLOSTASPAR_04943 [Clostridium asparagiforme
           DSM 15981]
 gi|225042746|gb|EEG52992.1| hypothetical protein CLOSTASPAR_04943 [Clostridium asparagiforme
           DSM 15981]
          Length = 484

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 26/68 (38%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110
                +C +C  C   CP  AI     P         + YD      ID  KCI CG C 
Sbjct: 125 YIDPAKCKSCGKCSQACPYNAIAHLERPCKKSCPVDAITYDEYGICEIDEKKCIECGNCV 184

Query: 111 EACPVDAI 118
            +CP  AI
Sbjct: 185 HSCPFGAI 192


>gi|209884426|ref|YP_002288283.1| NADH dehydrogenase i chain g [Oligotropha carboxidovorans OM5]
 gi|209872622|gb|ACI92418.1| NADH dehydrogenase i chain g [Oligotropha carboxidovorans OM5]
          Length = 319

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 4/75 (5%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT----VRYDIDMIKCIYCGLCQE 111
           Y    ++CI C  C   C  Q     +      G           ++    C++CG C E
Sbjct: 170 YVREYDKCILCYKCVDACGTQWQNSFAIQIAGRGFDAQISTEFAVELPESACVFCGNCVE 229

Query: 112 ACPVDAIVEGPNFEF 126
            CP  A+     ++ 
Sbjct: 230 VCPTGALSFKSEYDM 244


>gi|168184462|ref|ZP_02619126.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum
           Bf]
 gi|237796254|ref|YP_002863806.1| dihydropyrimidine dehydrogenase [Clostridium botulinum Ba4 str.
           657]
 gi|182672460|gb|EDT84421.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum
           Bf]
 gi|229261448|gb|ACQ52481.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum
           Ba4 str. 657]
          Length = 411

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 7/110 (6%)

Query: 15  EFVGAFFLCLRY-FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
           + +      ++   FK    +     K            +      +E C+ C  C   C
Sbjct: 295 DMIEGLSYYMKEKGFKKLEDMVGLANKNIIPAEDLDRGYIVYPKFNKENCVGCGRCYISC 354

Query: 74  PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                    G +      +  +  ++   C+ C LC   CPV  I +G  
Sbjct: 355 YDG------GHQAIKWDGKNRKPILEKENCVGCHLCANVCPVQCISKGEI 398


>gi|126698470|ref|YP_001087367.1| iron-dependent hydrogenase [Clostridium difficile 630]
 gi|260682591|ref|YP_003213876.1| iron-dependent hydrogenase [Clostridium difficile CD196]
 gi|260686191|ref|YP_003217324.1| iron-dependent hydrogenase [Clostridium difficile R20291]
 gi|260208754|emb|CBA61609.1| iron-dependent hydrogenase [Clostridium difficile CD196]
 gi|260212207|emb|CBE02898.1| iron-dependent hydrogenase [Clostridium difficile R20291]
          Length = 509

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 7/71 (9%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT-------RRTVRYDIDMIKCIYCG 107
                 E C AC +C+  C   AI+    P             R  ++  I   KC+ CG
Sbjct: 147 MAYINHELCKACGMCKKACQYDAISEVVRPCKSVCPTNALGFDRENMKAMIHEDKCLNCG 206

Query: 108 LCQEACPVDAI 118
            C  ACP  AI
Sbjct: 207 ACMSACPFGAI 217


>gi|119719691|ref|YP_920186.1| thiamine pyrophosphate binding domain-containing protein
           [Thermofilum pendens Hrk 5]
 gi|119524811|gb|ABL78183.1| indolepyruvate ferredoxin oxidoreductase, subunit iorA [Thermofilum
           pendens Hrk 5]
          Length = 623

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 10/69 (14%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             +  Y   +ERC+ C +C       AI  E   R            I    C+ CG+C 
Sbjct: 558 ERVVPYYVDQERCVRCGICVDKFSCPAIVREEDGRVV----------ILPEVCVGCGVCA 607

Query: 111 EACPVDAIV 119
             CP  AI 
Sbjct: 608 TICPAKAIH 616


>gi|323526712|ref|YP_004228865.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia sp.
           CCGE1001]
 gi|323383714|gb|ADX55805.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia sp.
           CCGE1001]
          Length = 414

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 11/68 (16%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             LR++    E CI C  CE  CP  AIT +              Y +    C  C  C 
Sbjct: 8   EVLRQHLIDPEICIRCNTCEETCPIDAITHDDN-----------NYVVRADVCNGCMACV 56

Query: 111 EACPVDAI 118
             CP  AI
Sbjct: 57  PPCPTGAI 64



 Score = 37.0 bits (84), Expect = 0.86,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPN 123
           ID   CI C  C+E CP+DAI    N
Sbjct: 15  IDPEICIRCNTCEETCPIDAITHDDN 40


>gi|56412572|ref|YP_149647.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197361507|ref|YP_002141143.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56126829|gb|AAV76335.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197092983|emb|CAR58415.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 337

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 29/94 (30%), Gaps = 8/94 (8%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
               +  P +    S    G   + +     +RCI C  C   C   A+   +       
Sbjct: 147 KTVIVGCPNDCAKASMADLGIIGVAKMRFTADRCIGCGACVKACSHHAVGCLALKNGKAV 206

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                    +   CI CG C  ACP  A    P+
Sbjct: 207 K--------EESACIGCGECVLACPTLAWQRKPD 232


>gi|308233843|ref|ZP_07664580.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Atopobium vaginae
           DSM 15829]
          Length = 953

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/129 (18%), Positives = 44/129 (34%), Gaps = 28/129 (21%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
           +E G+ +   RG   +  + +   +CI C  C  +CP   I   +               
Sbjct: 447 YELGTAAYEKRGVAVMVPHWDE-TKCIQCNNCSFVCPHSTIRPIAMTEAEAAAAPAQMRM 505

Query: 98  ID----------------MIKCIYCGLCQEACPVDAIVEGP---------NFEFATETRQ 132
           ID                 + C+ C  C   CP D +   P          +++A +  +
Sbjct: 506 IDAKGKGADGLKFAIAVSPLDCMGCTNCVYVCPKDCLTMVPTEQELDQQEVWDYAVD--E 563

Query: 133 ELYYDKERL 141
           +   +KE+L
Sbjct: 564 DNVSEKEQL 572


>gi|309792297|ref|ZP_07686769.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing
           protein [Oscillochloris trichoides DG6]
 gi|308225838|gb|EFO79594.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing
           protein [Oscillochloris trichoides DG6]
          Length = 1182

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 27/92 (29%), Gaps = 16/92 (17%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPR 85
             +T+   +   AL      E+ CI C  C  +CP                A        
Sbjct: 669 PTATTQWEKRNLALEIPVWDEKICIQCGKCAFVCPHAVIRSKVYQPDALAGAPDTFKSVD 728

Query: 86  CHDGTRRTVRY--DIDMIKCIYCGLCQEACPV 115
                    RY   +    C  C LC E CPV
Sbjct: 729 ARFKELPGQRYTLQVSPEDCTGCALCVEVCPV 760



 Score = 34.3 bits (77), Expect = 6.4,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 16/56 (28%), Gaps = 13/56 (23%)

Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158
           CI CG C   CP   I                 Y  + L    D ++S   R    
Sbjct: 692 CIQCGKCAFVCPHAVIRSK-------------VYQPDALAGAPDTFKSVDARFKEL 734


>gi|240145814|ref|ZP_04744415.1| periplasmic [Fe] hydrogenase 1 [Roseburia intestinalis L1-82]
 gi|257202092|gb|EEV00377.1| periplasmic [Fe] hydrogenase 1 [Roseburia intestinalis L1-82]
          Length = 348

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110
                +C  C  C   CP  AI     P         + Y+      ID  KCI CG C 
Sbjct: 124 HIDPSKCKECGRCAQACPYNAIAHLKRPCKFSCPVNAITYNEYGISVIDKEKCIRCGKCI 183

Query: 111 EACPVDAI 118
            +CP  AI
Sbjct: 184 HSCPFGAI 191


>gi|59802094|ref|YP_208806.1| putative ferredoxin [Neisseria gonorrhoeae FA 1090]
 gi|194099985|ref|YP_002003124.1| putative ferredoxin [Neisseria gonorrhoeae NCCP11945]
 gi|239997992|ref|ZP_04717916.1| putative ferredoxin [Neisseria gonorrhoeae 35/02]
 gi|240017478|ref|ZP_04724018.1| putative ferredoxin [Neisseria gonorrhoeae FA6140]
 gi|268593845|ref|ZP_06128012.1| ferredoxin [Neisseria gonorrhoeae 35/02]
 gi|293398133|ref|ZP_06642338.1| electron transport complex protein RnfB [Neisseria gonorrhoeae F62]
 gi|59718989|gb|AAW90394.1| putative ferredoxin [Neisseria gonorrhoeae FA 1090]
 gi|193935275|gb|ACF31099.1| putative ferredoxin [Neisseria gonorrhoeae NCCP11945]
 gi|268547234|gb|EEZ42652.1| ferredoxin [Neisseria gonorrhoeae 35/02]
 gi|291611396|gb|EFF40466.1| electron transport complex protein RnfB [Neisseria gonorrhoeae F62]
 gi|317165435|gb|ADV08976.1| putative ferredoxin [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 279

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CPA AI               + + +   +C  CGLC   CPVD I
Sbjct: 75  DETACIGCTACIRACPADAIMGAGK----------LMHTVITDECTGCGLCVAPCPVDCI 124

Query: 119 VEGP 122
              P
Sbjct: 125 HMQP 128



 Score = 35.1 bits (79), Expect = 3.5,   Method: Composition-based stats.
 Identities = 12/23 (52%), Positives = 13/23 (56%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIV 119
            ID   CI C  C  ACP DAI+
Sbjct: 73  RIDETACIGCTACIRACPADAIM 95


>gi|167037063|ref|YP_001664641.1| cobyrinic acid a,c-diamide synthase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115478|ref|YP_004185637.1| cobyrinic acid a,c-diamide synthase [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166855897|gb|ABY94305.1| Cobyrinic acid a,c-diamide synthase [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928569|gb|ADV79254.1| cobyrinic acid a,c-diamide synthase [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
          Length = 291

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 22/110 (20%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE-------ERCIACKLCEAIC 73
              L    K K   +   E  + +   +GE   +R   G+       ++CI C LCE +C
Sbjct: 19  ATTLSTIVKNKIMADCDVEAPNLNIVLQGEIIEKRDFYGKETAVIDKDKCIECGLCEELC 78

Query: 74  PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
              AI+                ++++   C  CGLC   CPV+AI     
Sbjct: 79  RFDAISN---------------FEVNPYYCEGCGLCMYKCPVEAIKLIEE 113


>gi|312622083|ref|YP_004023696.1| pyruvate/ketoisovalerate oxidoreductase subunit gamma
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312202550|gb|ADQ45877.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 339

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 8/91 (8%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E+CI C LCE  CP          +  +G  +      D   C  C  C + CP  A+VE
Sbjct: 252 EKCINCGLCETTCPD--YVFVWDRKVENGKSKMFNLGPDYQYCKGCLRCVDICPTGALVE 309

Query: 121 GPNFEFATET---RQEL-YYDKERLLNNGDR 147
           G   E+  E    + +   Y+K     +G++
Sbjct: 310 GIEREYDIEKISAKHDFDIYEKW--YEDGEK 338


>gi|312898883|ref|ZP_07758271.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Megasphaera
           micronuciformis F0359]
 gi|310620045|gb|EFQ03617.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Megasphaera
           micronuciformis F0359]
          Length = 1172

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 35/99 (35%), Gaps = 18/99 (18%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAIT---------------IESGPRCHDGTRRTVR 95
            AL       E+CI C  C  +CP   I                  + P+   G      
Sbjct: 676 PALYVPSWDAEKCIGCVQCSFVCPHATIRPVLTTEEERAKAPAGFVTAPKAKSGKEYGFT 735

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134
             +D + C+ CG C   CP  A+   PN E   E R ++
Sbjct: 736 IVVDQLDCLECGSCANVCPAKALTMVPNTE---EERAKM 771


>gi|77918361|ref|YP_356176.1| MinD family ATPase [Pelobacter carbinolicus DSM 2380]
 gi|77544444|gb|ABA88006.1| MinD superfamily P-loop ATPase [Pelobacter carbinolicus DSM 2380]
          Length = 299

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 26/82 (31%), Gaps = 4/82 (4%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100
             T          ++      +C  C  C+ +C  +A+                 Y ID 
Sbjct: 46  PPTPLSSHPFSGGKQAFIETAKCQLCGTCQKLCRFEAVRGPDTQSGSP----ESGYSIDS 101

Query: 101 IKCIYCGLCQEACPVDAIVEGP 122
             C  CG+C   CP +AI    
Sbjct: 102 TACEGCGVCAHFCPAEAIRFTD 123


>gi|78067137|ref|YP_369906.1| ferredoxin [Burkholderia sp. 383]
 gi|77967882|gb|ABB09262.1| Electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           sp. 383]
          Length = 334

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 22/66 (33%), Gaps = 10/66 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C LC   CP  AI                 + I    C  C LC   CPVD
Sbjct: 113 FIDESLCIGCTLCMQACPVDAIVGAPKQ----------MHTIIESLCTGCDLCVPPCPVD 162

Query: 117 AIVEGP 122
            I   P
Sbjct: 163 CIAMLP 168


>gi|289547804|ref|YP_003472792.1| NADH:ubiquinone oxidoreductase, subunit G, iron- sulphur binding
           protein [Thermocrinis albus DSM 14484]
 gi|289181421|gb|ADC88665.1| NADH:ubiquinone oxidoreductase, subunit G, iron- sulphur binding
           protein [Thermocrinis albus DSM 14484]
          Length = 636

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 32/86 (37%), Gaps = 6/86 (6%)

Query: 61  ERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            RC+ C  C  +C     A  +    R            +D   C  CGLC   CPV AI
Sbjct: 149 NRCVVCYRCTRVCDEVVGARALYVEERGFHTNIVPAVRPMDTSSCEMCGLCVYVCPVGAI 208

Query: 119 VEGPNFEFATETRQELYYDKERLLNN 144
           +  P   F   TR      K+R L N
Sbjct: 209 ISKP---FKYWTRS-WLLKKDRTLCN 230


>gi|262066998|ref|ZP_06026610.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Fusobacterium
           periodonticum ATCC 33693]
 gi|291379285|gb|EFE86803.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Fusobacterium
           periodonticum ATCC 33693]
          Length = 1189

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 44/124 (35%), Gaps = 25/124 (20%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-------------QAITIESGP 84
           FE G+++   RG        N  ++CI C  C  +CP              +A  IE   
Sbjct: 676 FENGTSAFEKRGVAVDVPIWN-IDKCIQCNQCSYVCPHAVIRPFLINEEELKASPIELAT 734

Query: 85  RCHDGTRRT---VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERL 141
           +   G        R  +  + C+ CG C   CP +A+   P          +   DKE +
Sbjct: 735 KKPTGKGLDGLGYRIQVSTLDCVGCGSCAHVCPANALDMMPI--------ADSLNDKEDI 786

Query: 142 LNNG 145
             + 
Sbjct: 787 KADY 790


>gi|254805750|ref|YP_003083971.1| putative ferredoxin [Neisseria meningitidis alpha14]
 gi|254669291|emb|CBA08254.1| putative ferredoxin [Neisseria meningitidis alpha14]
          Length = 279

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CPA AI               + + +   +C  CGLC   CPVD I
Sbjct: 75  DETACIGCTACIRACPADAIMGAGK----------LMHTVIADECTGCGLCVAPCPVDCI 124

Query: 119 VEGP 122
              P
Sbjct: 125 HMQP 128



 Score = 35.1 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 12/23 (52%), Positives = 13/23 (56%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIV 119
            ID   CI C  C  ACP DAI+
Sbjct: 73  RIDETACIGCTACIRACPADAIM 95


>gi|227823015|ref|YP_002826987.1| dihydropyrimidine dehydrogenase [Sinorhizobium fredii NGR234]
 gi|227342016|gb|ACP26234.1| dihydropyrimidine dehydrogenase [Sinorhizobium fredii NGR234]
          Length = 437

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 6/78 (7%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI C  C       A    S             +++   +C+ 
Sbjct: 330 QYLNLNYVSKAKIDQDACIKCGRCHI-----ACEDTSHQAITQFVNGMRHFEVIEEECVG 384

Query: 106 CGLCQEACPV-DAIVEGP 122
           C LC   CPV + I   P
Sbjct: 385 CNLCVNVCPVENCITMEP 402


>gi|240015030|ref|ZP_04721943.1| putative ferredoxin [Neisseria gonorrhoeae DGI18]
 gi|240081619|ref|ZP_04726162.1| putative ferredoxin [Neisseria gonorrhoeae FA19]
 gi|240113900|ref|ZP_04728390.1| putative ferredoxin [Neisseria gonorrhoeae MS11]
 gi|240116632|ref|ZP_04730694.1| putative ferredoxin [Neisseria gonorrhoeae PID18]
 gi|240118855|ref|ZP_04732917.1| putative ferredoxin [Neisseria gonorrhoeae PID1]
 gi|240122098|ref|ZP_04735060.1| putative ferredoxin [Neisseria gonorrhoeae PID24-1]
 gi|240124392|ref|ZP_04737348.1| putative ferredoxin [Neisseria gonorrhoeae PID332]
 gi|240124736|ref|ZP_04737622.1| putative ferredoxin [Neisseria gonorrhoeae SK-92-679]
 gi|240129069|ref|ZP_04741730.1| putative ferredoxin [Neisseria gonorrhoeae SK-93-1035]
 gi|254494652|ref|ZP_05107823.1| ferredoxin [Neisseria gonorrhoeae 1291]
 gi|260439607|ref|ZP_05793423.1| putative ferredoxin [Neisseria gonorrhoeae DGI2]
 gi|268597712|ref|ZP_06131879.1| ferredoxin [Neisseria gonorrhoeae FA19]
 gi|268599961|ref|ZP_06134128.1| ferredoxin [Neisseria gonorrhoeae MS11]
 gi|268602297|ref|ZP_06136464.1| ferredoxin [Neisseria gonorrhoeae PID18]
 gi|268604560|ref|ZP_06138727.1| ferredoxin [Neisseria gonorrhoeae PID1]
 gi|268683016|ref|ZP_06149878.1| ferredoxin [Neisseria gonorrhoeae PID332]
 gi|268683315|ref|ZP_06150177.1| ferredoxin [Neisseria gonorrhoeae SK-92-679]
 gi|268687445|ref|ZP_06154307.1| ferredoxin [Neisseria gonorrhoeae SK-93-1035]
 gi|291042849|ref|ZP_06568590.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
 gi|226513692|gb|EEH63037.1| ferredoxin [Neisseria gonorrhoeae 1291]
 gi|268551500|gb|EEZ46519.1| ferredoxin [Neisseria gonorrhoeae FA19]
 gi|268584092|gb|EEZ48768.1| ferredoxin [Neisseria gonorrhoeae MS11]
 gi|268586428|gb|EEZ51104.1| ferredoxin [Neisseria gonorrhoeae PID18]
 gi|268588691|gb|EEZ53367.1| ferredoxin [Neisseria gonorrhoeae PID1]
 gi|268623300|gb|EEZ55700.1| ferredoxin [Neisseria gonorrhoeae PID332]
 gi|268623599|gb|EEZ55999.1| ferredoxin [Neisseria gonorrhoeae SK-92-679]
 gi|268627729|gb|EEZ60129.1| ferredoxin [Neisseria gonorrhoeae SK-93-1035]
 gi|291013283|gb|EFE05249.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2]
          Length = 279

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CPA AI               + + +   +C  CGLC   CPVD I
Sbjct: 75  DETACIGCTACIRACPADAIMGAGK----------LMHTVITDECTGCGLCVAPCPVDCI 124

Query: 119 VEGP 122
              P
Sbjct: 125 HMQP 128



 Score = 35.1 bits (79), Expect = 3.5,   Method: Composition-based stats.
 Identities = 12/23 (52%), Positives = 13/23 (56%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIV 119
            ID   CI C  C  ACP DAI+
Sbjct: 73  RIDETACIGCTACIRACPADAIM 95


>gi|154686862|ref|YP_001422023.1| YrhE [Bacillus amyloliquefaciens FZB42]
 gi|154352713|gb|ABS74792.1| YrhE [Bacillus amyloliquefaciens FZB42]
          Length = 995

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 4/91 (4%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+     S     + +   Y     +CIAC  C  +C    +             R
Sbjct: 139 HQKYPYTPKDDSKCAV-DMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWERDRPR 197

Query: 93  TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120
            +  +   I+   C+ CG C   CP +A++E
Sbjct: 198 VIWDEGVAINESSCVSCGQCVTVCPCNALME 228


>gi|296330667|ref|ZP_06873144.1| iron-sulfur binding domain-containing protein [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305673923|ref|YP_003865595.1| iron-sulfur binding domain-containing protein [Bacillus subtilis
           subsp. spizizenii str. W23]
 gi|296152131|gb|EFG93003.1| iron-sulfur binding domain-containing protein [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305412167|gb|ADM37286.1| iron-sulfur binding domain-containing protein [Bacillus subtilis
           subsp. spizizenii str. W23]
          Length = 985

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 9/101 (8%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            ++         + PF++      +  + +   Y    ++CI C  C   C    +T   
Sbjct: 114 TVKEM--KINHQSIPFDQKP----YHKDESHPFYRYDPDQCILCGRCVEACQDVQVTETL 167

Query: 83  GPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPVDAIVE 120
                    R +  +   I+   C+ CG C   CP +A++E
Sbjct: 168 TIDWERKRPRVIWDNDVPINESSCVSCGHCSTVCPCNAMME 208



 Score = 40.9 bits (94), Expect = 0.060,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 21/66 (31%), Gaps = 9/66 (13%)

Query: 57  PNGEERCIAC----KLCEAICPA-----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
            N E  C  C      CE             +I    + +        Y  D  +CI CG
Sbjct: 93  YNHELYCTVCDYNNGGCEIHNTVKEMKINHQSIPFDQKPYHKDESHPFYRYDPDQCILCG 152

Query: 108 LCQEAC 113
            C EAC
Sbjct: 153 RCVEAC 158


>gi|323526708|ref|YP_004228861.1| dihydroorotate dehydrogenase family protein [Burkholderia sp.
           CCGE1001]
 gi|323383710|gb|ADX55801.1| dihydroorotate dehydrogenase family protein [Burkholderia sp.
           CCGE1001]
          Length = 442

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 8/75 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117
            +++CI C LC   C   A       +          +++   +C+ C LC   CPV   
Sbjct: 341 DQDKCIQCGLCHIACEDTAHQAIMKEKDGV-----RHFEVVDSECVGCNLCMHVCPVEQC 395

Query: 118 IVE--GPNFEFATET 130
           I      N E+A  T
Sbjct: 396 ITMERVDNGEYANWT 410


>gi|209550605|ref|YP_002282522.1| dihydropyrimidine dehydrogenase [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536361|gb|ACI56296.1| dihydroorotate dehydrogenase family protein [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 437

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 6/78 (7%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI C  C   C     + ++     +G R    +++   +C+ 
Sbjct: 330 QYLNLNYIAKAKIDQDACIKCGRCHIACED--TSHQAITNVVNGLR---HFEVIEEECVG 384

Query: 106 CGLCQEACPV-DAIVEGP 122
           C LC   CPV + I   P
Sbjct: 385 CNLCVNVCPVENCITMEP 402


>gi|302035986|ref|YP_003796308.1| NADH-quinone oxidoreductase subunit G [Candidatus Nitrospira
           defluvii]
 gi|300604050|emb|CBK40382.1| NADH-quinone oxidoreductase, subunit G [Candidatus Nitrospira
           defluvii]
          Length = 889

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 28/108 (25%), Gaps = 7/108 (6%)

Query: 31  KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT 90
            TT  +   K      +              RC+ C  C   C          P      
Sbjct: 125 PTTSRFTETKRIFQKEYFSPLI----ETQMNRCVQCLRCVRYCDEIMDVKALAPVGRGTM 180

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIV---EGPNFEFATETRQELY 135
                +    + C +CG C + CPV AI        +      R +  
Sbjct: 181 TEIKHFGPHELDCEFCGGCIQICPVGAITSRLSMYEYRPWMLKRADTI 228


>gi|239787665|emb|CAX84132.1| Pyridine nucleotide-disulphide oxidoreductase family protein
           [uncultured bacterium]
          Length = 544

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 23/67 (34%), Gaps = 5/67 (7%)

Query: 58  NGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               RC++C  C        A    +  +   G     +YD     C  CGLC   CP  
Sbjct: 480 YEARRCMSCGNCFECDNCYGACPDNAIIKVGPGQGFEFKYDY----CKGCGLCVTECPCG 535

Query: 117 AIVEGPN 123
           AI   P 
Sbjct: 536 AIDMVPE 542


>gi|255659850|ref|ZP_05405259.1| pyridine nucleotide-disulfide oxidoreductase [Mitsuokella multacida
           DSM 20544]
 gi|260847927|gb|EEX67934.1| pyridine nucleotide-disulfide oxidoreductase [Mitsuokella multacida
           DSM 20544]
          Length = 778

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 26/74 (35%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            L    +  +RC++C  C           E      +    T+ Y  D  +CI CG+C  
Sbjct: 694 ELGDPVSDYKRCVSCGTCRDCKMCLESCPEKAINRIEHEDGTIEYTSDPNRCIGCGICAG 753

Query: 112 ACPVDAIVEGPNFE 125
            CP        N E
Sbjct: 754 VCPCGVWTIQDNPE 767


>gi|167770334|ref|ZP_02442387.1| hypothetical protein ANACOL_01677 [Anaerotruncus colihominis DSM
           17241]
 gi|167667656|gb|EDS11786.1| hypothetical protein ANACOL_01677 [Anaerotruncus colihominis DSM
           17241]
          Length = 513

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 6/66 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQEA 112
            +E+CI C  C  +CP  AI     P                R  ID  KC+ CG+C   
Sbjct: 157 DQEKCIKCGRCAEVCPYGAILKLERPCASACGMDAISSDEHGRAVIDYDKCVSCGMCIVN 216

Query: 113 CPVDAI 118
           CP  AI
Sbjct: 217 CPFGAI 222



 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 13/58 (22%)

Query: 63  CIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C    C+ +CP  A++I  G              ID  KCI CG C E CP  AI
Sbjct: 130 CQGCLAHPCKEVCPRDAVSIVHGKSV-----------IDQEKCIKCGRCAEVCPYGAI 176


>gi|88799940|ref|ZP_01115512.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Reinekea
           sp. MED297]
 gi|88777371|gb|EAR08574.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Reinekea
           sp. MED297]
          Length = 196

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 30/95 (31%), Gaps = 10/95 (10%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E          E   +     E+ CI C  C   CP  AI   +             + +
Sbjct: 88  EPKPLDAEHGEEKTPQVAIIREDECIGCTKCIQACPVDAILGAAKQ----------MHTV 137

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
              +C  C LC E CPVD I   P  +      Q 
Sbjct: 138 IESECTGCDLCVEPCPVDCIDMVPIEDTLATWHQN 172


>gi|188590495|ref|YP_001921441.1| dihydropyrimidine dehydrogenase [Clostridium botulinum E3 str.
           Alaska E43]
 gi|188500776|gb|ACD53912.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum
           E3 str. Alaska E43]
          Length = 412

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 7/94 (7%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           K            +      EE+C+ C  C   C   A                 + +++
Sbjct: 322 KNIIPAEDLDREYIVYPEVNEEKCLGCGRCYISCYDGAHQAIK------WNSEERKPEVN 375

Query: 100 MIKCIYCGLCQEACPVDAIVEGPN-FEFATETRQ 132
             +C+ C LC   CPV AI +G   F+   + R+
Sbjct: 376 KDRCVGCHLCALVCPVTAIGKGEIKFKNNGKERE 409


>gi|119897730|ref|YP_932943.1| electron transport complex protein RnfC [Azoarcus sp. BH72]
 gi|119670143|emb|CAL94056.1| putative electronen transport complex protein RnfC [Azoarcus sp.
           BH72]
          Length = 552

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 36/104 (34%), Gaps = 8/104 (7%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            AL   P  E+ CI C  C   CPA+    E               +  +  CI CG C 
Sbjct: 352 PALFPPPPPEQPCIRCGECARACPAELQPFELY-WFGRARNFGKAQEYHLFDCIECGCCA 410

Query: 111 EACPVDAIVEGPNFEFAT---ETRQELYYDKERLLNNGDRWESE 151
             CP   I     F F+      R+    DK+      +R+E  
Sbjct: 411 YVCPAH-IPLVDYFRFSKGEIWARER---DKDAADAARERFEFR 450


>gi|126698471|ref|YP_001087368.1| iron-dependent hydrogenase [Clostridium difficile 630]
 gi|255100006|ref|ZP_05328983.1| iron-dependent hydrogenase [Clostridium difficile QCD-63q42]
 gi|255305893|ref|ZP_05350065.1| iron-dependent hydrogenase [Clostridium difficile ATCC 43255]
 gi|115249908|emb|CAJ67727.1| putative iron-dependent hydrogenase [Clostridium difficile]
          Length = 498

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 7/69 (10%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIKCIYCGLC 109
               + C AC +C++ C   AI+    P             R T++  I    CI CG C
Sbjct: 138 YINHDLCKACGMCKSSCQYDAISEVVRPCKSVCPTGALDFNRNTMKAMIHEDNCINCGAC 197

Query: 110 QEACPVDAI 118
             ACP  AI
Sbjct: 198 MSACPFGAI 206


>gi|110634405|ref|YP_674613.1| dihydropyrimidine dehydrogenase [Mesorhizobium sp. BNC1]
 gi|110285389|gb|ABG63448.1| dihydrouracil dehydrogenase (NAD+) / dihydropyrimidine
           dehydrogenase (NADP+) [Chelativorans sp. BNC1]
          Length = 437

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 6/78 (7%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI C  C   C     + ++     +G R    +++   +C+ 
Sbjct: 330 QYLNLNYITKARIDQDLCIKCGRCHIACED--TSHQAITSVVNGVRY---FEVKEEECVG 384

Query: 106 CGLCQEACPV-DAIVEGP 122
           C LC   CPV + I   P
Sbjct: 385 CNLCVNVCPVENCITMVP 402


>gi|293568092|ref|ZP_06679429.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecium E1071]
 gi|291589174|gb|EFF20985.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecium E1071]
          Length = 1230

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 20/93 (21%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTV 94
            AL       +RC  C  C  +CP  AI                 I    R  DG +   
Sbjct: 680 VALEVPQWISDRCTMCNECAFVCPHAAIRPFLADEEEMEEAPEGFIVREMRGADGVKY-- 737

Query: 95  RYDIDMIKCIYCGLCQEACP--VDAIVEGPNFE 125
           R  + +  C  CGLC EACP    A+V  P  E
Sbjct: 738 RIQVSVEDCTGCGLCVEACPAKEKALVMKPYEE 770


>gi|302557265|ref|ZP_07309607.1| respiratory chain oxidoreductase [Streptomyces griseoflavus Tu4000]
 gi|302474883|gb|EFL37976.1| respiratory chain oxidoreductase [Streptomyces griseoflavus Tu4000]
          Length = 286

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 26/75 (34%), Gaps = 4/75 (5%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM----IKCIYCGLCQE 111
           Y     +CI C  C   C  Q     +      G    +  + D       C+YCG C E
Sbjct: 145 YVRDYGKCILCYKCVDACGDQWQNTFAISVAGHGFDARIAVEHDAPLTDSACVYCGNCIE 204

Query: 112 ACPVDAIVEGPNFEF 126
            CP  A+     F+ 
Sbjct: 205 VCPTGALSFKSEFDM 219


>gi|251780330|ref|ZP_04823250.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243084645|gb|EES50535.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 626

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 15/98 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            L+Y F+ +   +   +K           +L  Y   +++C  C  C  +CPA AIT E 
Sbjct: 543 TLKY-FREEYIAHVVDKKCPGGVC----KSLMSYEIDKDKCKGCSKCARMCPAGAITGEI 597

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
                        Y ID  KCI CG C + C   AI  
Sbjct: 598 KKP----------YTIDQSKCIKCGACMDGCAFKAIQL 625


>gi|254974515|ref|ZP_05270987.1| iron-dependent hydrogenase [Clostridium difficile QCD-66c26]
 gi|255091906|ref|ZP_05321384.1| iron-dependent hydrogenase [Clostridium difficile CIP 107932]
 gi|255100005|ref|ZP_05328982.1| iron-dependent hydrogenase [Clostridium difficile QCD-63q42]
 gi|255305892|ref|ZP_05350064.1| iron-dependent hydrogenase [Clostridium difficile ATCC 43255]
 gi|255313640|ref|ZP_05355223.1| iron-dependent hydrogenase [Clostridium difficile QCD-76w55]
 gi|255516324|ref|ZP_05384000.1| iron-dependent hydrogenase [Clostridium difficile QCD-97b34]
 gi|255649423|ref|ZP_05396325.1| iron-dependent hydrogenase [Clostridium difficile QCD-37x79]
 gi|306519504|ref|ZP_07405851.1| iron-dependent hydrogenase [Clostridium difficile QCD-32g58]
 gi|328887576|emb|CAJ67726.2| putative iron-dependent hydrogenase [Clostridium difficile]
          Length = 496

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 7/71 (9%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT-------RRTVRYDIDMIKCIYCG 107
                 E C AC +C+  C   AI+    P             R  ++  I   KC+ CG
Sbjct: 134 MAYINHELCKACGMCKKACQYDAISEVVRPCKSVCPTNALGFDRENMKAMIHEDKCLNCG 193

Query: 108 LCQEACPVDAI 118
            C  ACP  AI
Sbjct: 194 ACMSACPFGAI 204


>gi|77918639|ref|YP_356454.1| NifJ-like oxidoreductase, Fe-S subunit [Pelobacter carbinolicus DSM
           2380]
 gi|77544722|gb|ABA88284.1| NifJ-like oxidoreductase, Fe-S subunit [Pelobacter carbinolicus DSM
           2380]
          Length = 1180

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 32/92 (34%), Gaps = 16/92 (17%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------QAITIESGP------- 84
             +TS   +   AL      E  C+ C LC  +CP          A  +E  P       
Sbjct: 668 PTATSRYEKRNIALEIPVWDEHLCVQCGLCSFVCPHATLRMKIYDASYLEQAPQTFRTVD 727

Query: 85  -RCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
            R  +         +    C+ CG+C E CPV
Sbjct: 728 ARGAEFEGNKFTLQVAPEDCVGCGICVEVCPV 759


>gi|254491903|ref|ZP_05105082.1| electron transport complex, RnfABCDGE type, C subunit subfamily
           [Methylophaga thiooxidans DMS010]
 gi|224463381|gb|EEF79651.1| electron transport complex, RnfABCDGE type, C subunit subfamily
           [Methylophaga thiooxydans DMS010]
          Length = 508

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/156 (21%), Positives = 45/156 (28%), Gaps = 25/156 (16%)

Query: 20  FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEH--------------ALRRYPN-----GE 60
           F   +        T   P E         G +               L    +       
Sbjct: 311 FGTPISELLAFAETKRQPDEPFILGGPMMGFNLSGDNLPVTKTANCILVGVDDAAPASEP 370

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             CI C  C   CPA  +  +             R D ++  CI CG C   CP   I  
Sbjct: 371 LPCIRCGDCATACPASLLPQQLYWHSRAKDFDQTR-DYNLFDCIECGCCDYVCP-SKIPL 428

Query: 121 GPNFEFATETR--QELYYDKERLLNNGDRWESEIVR 154
              F FA      QE  + K  L    +R+E+ + R
Sbjct: 429 VSYFRFAKTEIMNQEREHQKSDLAR--ERFETRLAR 462


>gi|209885821|ref|YP_002289678.1| formate dehydrogenase, alpha subunit [Oligotropha carboxidovorans
           OM5]
 gi|209874017|gb|ACI93813.1| formate dehydrogenase, alpha subunit [Oligotropha carboxidovorans
           OM5]
          Length = 923

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 3/85 (3%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRY 96
             +   + R+ G+++        + CI C LC   C   Q   +      + G +    +
Sbjct: 122 ESRFPKAERWTGDYSHPAMSVNLDACIQCGLCVRACREVQVNDVIGMAYRNHGAKVVFDF 181

Query: 97  D--IDMIKCIYCGLCQEACPVDAIV 119
           D  +    C+ CG C +ACP  A++
Sbjct: 182 DDPMGESTCVACGECVQACPTGALM 206


>gi|317153236|ref|YP_004121284.1| glutamate synthase (NADPH) [Desulfovibrio aespoeensis Aspo-2]
 gi|316943487|gb|ADU62538.1| Glutamate synthase (NADPH) [Desulfovibrio aespoeensis Aspo-2]
          Length = 508

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 23/68 (33%), Gaps = 9/68 (13%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + CI CK+C   C  QA   +   +             D  KCI C  C+  CP
Sbjct: 14  CIDRDPDLCINCKVCVRQCSYQAHYFDEARQKVM---------HDNTKCIGCHRCEALCP 64

Query: 115 VDAIVEGP 122
             A+    
Sbjct: 65  TAALNIRN 72


>gi|220929712|ref|YP_002506621.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium cellulolyticum H10]
 gi|220000040|gb|ACL76641.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Clostridium cellulolyticum H10]
          Length = 623

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 10/68 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L      +E+C  C  C  ICP QAI            +    Y ++  KCI CG C E 
Sbjct: 565 LASIVIEKEKCKGCSKCARICPVQAIEG----------KIKEPYTVNQSKCIKCGACLEV 614

Query: 113 CPVDAIVE 120
           CP  AI E
Sbjct: 615 CPFAAIKE 622



 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 13/40 (32%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +          +      I+  KC  C  C   CPV AI
Sbjct: 551 HVVDKKCKTHTCKSLASIVIEKEKCKGCSKCARICPVQAI 590


>gi|15679548|ref|NP_276665.1| formate dehydrogenase, alpha subunit-like protein
           [Methanothermobacter thermautotrophicus str. Delta H]
 gi|2622673|gb|AAB86026.1| formate dehydrogenase, alpha subunit homolog [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 865

 Score = 51.3 bits (121), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQEA 112
            +    ++CI C LC  +C A              TR +   D  I    C+ CG C E 
Sbjct: 124 FFIRNHDKCILCGLCVRVCRATGAEAIDFAYRGHDTRISTFMDRAITESSCVSCGECVEV 183

Query: 113 CPVDAI 118
           CPV A+
Sbjct: 184 CPVGAL 189


>gi|327191027|gb|EGE58081.1| NADH-ubiquinone oxidoreductase protein, chain G [Rhizobium etli
           CNPAF512]
          Length = 859

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 3/82 (3%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
            ++   S   R    +    N   RCI C+ C  +C      +  G            ++
Sbjct: 126 DKRVFHSEDIRLSPVIIMNVN---RCIQCQRCVRMCEEVVGAVALGTVEKGMDTAVTGFE 182

Query: 98  IDMIKCIYCGLCQEACPVDAIV 119
             +  C  CG C E CPV A++
Sbjct: 183 GSLAGCDQCGNCVEVCPVGALM 204


>gi|308174421|ref|YP_003921126.1| oxido-reductase [Bacillus amyloliquefaciens DSM 7]
 gi|307607285|emb|CBI43656.1| putative oxido-reductase [Bacillus amyloliquefaciens DSM 7]
          Length = 995

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 4/91 (4%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+     S     + +   Y     +CIAC  C  +C    +             R
Sbjct: 139 HQKYPYTPKDDSKCAV-DMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWERDRPR 197

Query: 93  TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120
            +  +   I+   C+ CG C   CP +A++E
Sbjct: 198 VIWDEGVAINESSCVSCGQCVTVCPCNALME 228


>gi|70606159|ref|YP_255029.1| formate dehydrogenase alpha chain [Sulfolobus acidocaldarius DSM
           639]
 gi|68566807|gb|AAY79736.1| formate dehydrogenase alpha chain [Sulfolobus acidocaldarius DSM
           639]
          Length = 976

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQE 111
            Y     +CI C  C   C   A+        +    R V  +   I    C+ CG C  
Sbjct: 137 FYTYDPSQCILCGRCVEACQDFAVNEVIWIDWNLNPPRVVWDNGNPIGNSSCVNCGTCVT 196

Query: 112 ACPVDAIVE 120
            CPV+A++E
Sbjct: 197 VCPVNALME 205



 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 26/86 (30%), Gaps = 7/86 (8%)

Query: 42  STSPRFRGEHALRRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRRTVR-- 95
             +   R     R     +  C  C      CE       + I S      G        
Sbjct: 77  PRALNARKTAVSRILRYHKLYCTICENNNGDCELHEAVIKLNINSQKYVDKGYALDDTGP 136

Query: 96  -YDIDMIKCIYCGLCQEACPVDAIVE 120
            Y  D  +CI CG C EAC   A+ E
Sbjct: 137 FYTYDPSQCILCGRCVEACQDFAVNE 162


>gi|325129008|gb|EGC51858.1| iron-sulfur cluster-binding protein [Neisseria meningitidis N1568]
          Length = 279

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CPA AI               + + +   +C  CGLC   CPVD I
Sbjct: 75  DETACIGCTACIRACPADAIMGAGK----------LMHTVIADECTGCGLCVAPCPVDCI 124

Query: 119 VEGP 122
              P
Sbjct: 125 HMQP 128



 Score = 35.1 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 12/23 (52%), Positives = 13/23 (56%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIV 119
            ID   CI C  C  ACP DAI+
Sbjct: 73  RIDETACIGCTACIRACPADAIM 95


>gi|323141630|ref|ZP_08076512.1| protein HymB [Phascolarctobacterium sp. YIT 12067]
 gi|322413895|gb|EFY04732.1| protein HymB [Phascolarctobacterium sp. YIT 12067]
          Length = 596

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 16/96 (16%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            L+Y F+ +   +   ++        G      +    + C  C LC   CP QAI+   
Sbjct: 514 TLKY-FRDEYEAHIKEKRCPA-----GVCEKMLHYEISDVCRGCGLCARQCPVQAISGSP 567

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                       ++ ID  KCI CG C  ACP  AI
Sbjct: 568 K----------TKHVIDQNKCIKCGACMTACPFKAI 593



 Score = 38.2 bits (87), Expect = 0.43,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 16/43 (37%)

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                RC  G    + +      C  CGLC   CPV AI   P
Sbjct: 525 HIKEKRCPAGVCEKMLHYEISDVCRGCGLCARQCPVQAISGSP 567


>gi|297526529|ref|YP_003668553.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Staphylothermus hellenicus DSM 12710]
 gi|297255445|gb|ADI31654.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Staphylothermus hellenicus DSM 12710]
          Length = 640

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 9/73 (12%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
                L  Y   +++C  C +C  +    AI +  G +            I    C  CG
Sbjct: 564 HKGIKLPVYTILQDKCTGCMVCVNLLGCPAIVVPKGSKKP---------VILPELCAGCG 614

Query: 108 LCQEACPVDAIVE 120
           LC + CP +AIV 
Sbjct: 615 LCAQVCPFNAIVL 627


>gi|157779399|gb|ABV71243.1| NADPH-dependent sulfur oxidoreductase B subunit [Thermococcus
           litoralis DSM 5473]
          Length = 555

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 14/104 (13%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
           L    +F+ +   +   ++            L +Y    ++C  C  C   CP +AI+ E
Sbjct: 464 LTTLQYFRDEYIAHVKDKRCPAKVCKP----LIKYVIIADKCTGCTACAIFCPVKAISGE 519

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
                     +   + ID   CI CG C   C  DAI     +E
Sbjct: 520 ----------KLKPHVIDQEACIKCGTCYNVCRFDAIKIVDAYE 553


>gi|15966201|ref|NP_386554.1| dihydropyrimidine dehydrogenase [Sinorhizobium meliloti 1021]
 gi|307308552|ref|ZP_07588254.1| dihydroorotate dehydrogenase family protein [Sinorhizobium meliloti
           BL225C]
 gi|307317330|ref|ZP_07596770.1| dihydroorotate dehydrogenase family protein [Sinorhizobium meliloti
           AK83]
 gi|15075471|emb|CAC47027.1| Dihydropyrimidine dehydrogenase [Sinorhizobium meliloti 1021]
 gi|306896919|gb|EFN27665.1| dihydroorotate dehydrogenase family protein [Sinorhizobium meliloti
           AK83]
 gi|306900952|gb|EFN31561.1| dihydroorotate dehydrogenase family protein [Sinorhizobium meliloti
           BL225C]
          Length = 437

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 6/78 (7%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI C  C       A    S             +++   +C+ 
Sbjct: 330 QYLNLNYIAKAKIDQDACIKCGRCHI-----ACEDTSHQAITQFVNGVRHFEVIEEECVG 384

Query: 106 CGLCQEACPV-DAIVEGP 122
           C LC   CPV + I   P
Sbjct: 385 CNLCVNVCPVENCITMEP 402


>gi|107023264|ref|YP_621591.1| ferredoxin [Burkholderia cenocepacia AU 1054]
 gi|116690347|ref|YP_835970.1| ferredoxin [Burkholderia cenocepacia HI2424]
 gi|105893453|gb|ABF76618.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           cenocepacia AU 1054]
 gi|116648436|gb|ABK09077.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           cenocepacia HI2424]
          Length = 342

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 22/66 (33%), Gaps = 10/66 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C LC   CP  AI                 + I    C  C LC   CPVD
Sbjct: 118 FIDENLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVASLCTGCDLCIPPCPVD 167

Query: 117 AIVEGP 122
            I   P
Sbjct: 168 CIAMLP 173


>gi|303232658|ref|ZP_07319343.1| pyruvate synthase [Atopobium vaginae PB189-T1-4]
 gi|302481144|gb|EFL44219.1| pyruvate synthase [Atopobium vaginae PB189-T1-4]
          Length = 1179

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/130 (20%), Positives = 45/130 (34%), Gaps = 24/130 (18%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-----QAITIESGPRCHDGTRR 92
           +E G+ +   RG   +    +   +CI C  C  +CP       A+T E         + 
Sbjct: 673 YELGTAAYEKRGVAVMVPRWDE-TKCIQCNNCSFVCPHATIRPFAMTPEEAAAAPSNMKM 731

Query: 93  T---------VRYDID--MIKCIYCGLCQEACPVDAIVEGP-NFEFATETR------QEL 134
                     +++ I    + C+ C  C   CP D +   P   E   +        ++ 
Sbjct: 732 IDAVGKGAQGMKFSIVVSPLDCMGCTNCLYVCPKDCLTMVPTEEELPMQKVWDWAVDEDN 791

Query: 135 YYDKERLLNN 144
              KE L NN
Sbjct: 792 VSTKEELANN 801


>gi|294782748|ref|ZP_06748074.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Fusobacterium sp.
           1_1_41FAA]
 gi|294481389|gb|EFG29164.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Fusobacterium sp.
           1_1_41FAA]
          Length = 1189

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/124 (22%), Positives = 43/124 (34%), Gaps = 25/124 (20%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-------------QAITIESGP 84
           FE G+++   RG        N  ++CI C  C  +CP              +A  IE   
Sbjct: 676 FENGTSAFEKRGVAVDVPIWN-IDKCIQCNQCSYVCPHAVIRPFLINEEELKASPIELAT 734

Query: 85  RCHDGTRRT---VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERL 141
           +   G        R  +  + C+ CG C   CP  A+   P          +   DKE +
Sbjct: 735 KKPTGKGLDGLGYRIQVSTLDCVGCGSCAHVCPAKALDMMPI--------ADSLNDKEDI 786

Query: 142 LNNG 145
             + 
Sbjct: 787 KADY 790


>gi|160941320|ref|ZP_02088657.1| hypothetical protein CLOBOL_06213 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435881|gb|EDP13648.1| hypothetical protein CLOBOL_06213 [Clostridium bolteae ATCC
           BAA-613]
          Length = 296

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/139 (17%), Positives = 48/139 (34%), Gaps = 18/139 (12%)

Query: 24  LRYFFKAKT-TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
           L  +F+      ++P+    +      +  +         C  C  C + C A  + +  
Sbjct: 5   LDSWFQEPVLQCHFPWVIIFSMSDKESKEEIHMVEINRNACTGCGQCMSDCIANNLFLRE 64

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT---ETRQELYYDKE 139
           G     G             CI CG C   CP++A+   P ++       ++++   D +
Sbjct: 65  GKAEVSGN------------CILCGHCVAVCPLNAVSI-PEYDMGDVEELSQEQAGLDSD 111

Query: 140 RLLNNGDRWESEIVRNIVT 158
           RLL    ++   + R    
Sbjct: 112 RLLK-AIKYRRSVRRFKQK 129


>gi|153833749|ref|ZP_01986416.1| formate dehydrogenase, alpha subunit [Vibrio harveyi HY01]
 gi|148869921|gb|EDL68884.1| formate dehydrogenase, alpha subunit [Vibrio harveyi HY01]
          Length = 1412

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 14/79 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIE--------------SGPRCHDGTRRTVRYDIDMIKCI 104
              RCI+C  C   C  +A+                    R H G+ +     +    C+
Sbjct: 631 DANRCISCGQCIQACRDKAVHGVLNFVCDKQGRPALRPDDRPHFGSNKNGLTLMGDSNCV 690

Query: 105 YCGLCQEACPVDAIVEGPN 123
            CG C + CP  A+V+  +
Sbjct: 691 QCGACVQVCPTGAMVDSRD 709


>gi|119896806|ref|YP_932019.1| electron transport complex protein RnfC [Azoarcus sp. BH72]
 gi|119669219|emb|CAL93132.1| probable electronen transport complex protein RnfC [Azoarcus sp.
           BH72]
          Length = 519

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 28/78 (35%), Gaps = 7/78 (8%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            CI C  C   CP   + ++       G       DI +  CI CG C   CP   I   
Sbjct: 382 PCIRCASCVGACPIGLMPLDMAALIKHGDLAASV-DIGLKDCIGCGTCSYVCP-SKIPLV 439

Query: 122 PNF-----EFATETRQEL 134
             F     E A + R ++
Sbjct: 440 HYFNHAKGELAAQDRNKM 457


>gi|15676135|ref|NP_273266.1| ferredoxin, 4Fe-4S type [Neisseria meningitidis MC58]
 gi|7225430|gb|AAF40665.1| ferredoxin, 4Fe-4S bacterial type [Neisseria meningitidis MC58]
 gi|316985127|gb|EFV64079.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           meningitidis H44/76]
 gi|325199417|gb|ADY94872.1| iron-sulfur cluster-binding protein [Neisseria meningitidis H44/76]
          Length = 279

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CPA AI               + + +   +C  CGLC   CPVD I
Sbjct: 75  DETACIGCTACIRACPADAIMGAGK----------LMHTVIADECTGCGLCVAPCPVDCI 124

Query: 119 VEGP 122
              P
Sbjct: 125 HMQP 128



 Score = 35.1 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 12/23 (52%), Positives = 13/23 (56%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIV 119
            ID   CI C  C  ACP DAI+
Sbjct: 73  RIDETACIGCTACIRACPADAIM 95


>gi|116749408|ref|YP_846095.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
            [Syntrophobacter fumaroxidans MPOB]
 gi|116698472|gb|ABK17660.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
            [Syntrophobacter fumaroxidans MPOB]
          Length = 1021

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 6/64 (9%)

Query: 59   GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +E CI C LCEA+CP  AI      R H    +  R +     C  CG+C  +CP  AI
Sbjct: 947  DQEACIGCGLCEALCPFGAI------RLHKVIGKGFRAETISASCKGCGVCSASCPQKAI 1000

Query: 119  VEGP 122
                
Sbjct: 1001 DMKH 1004



 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 27/80 (33%), Gaps = 12/80 (15%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAIT-------IESGPRCHDGTRRTVRYDIDMIKCIY- 105
           +       +CIAC +C   CP +                        ++Y ID   CIY 
Sbjct: 105 QPRYVDSSKCIACGVCAEKCPKKVDDLFNEGLGKRKAAYVKYPQAVPLKYVIDEDNCIYF 164

Query: 106 ----CGLCQEACPVDAIVEG 121
               C  C++ CP  A+   
Sbjct: 165 KSGKCRACEKFCPAGAVDFS 184


>gi|317126172|ref|YP_004100284.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Intrasporangium calvum DSM 43043]
 gi|315590260|gb|ADU49557.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Intrasporangium calvum DSM 43043]
          Length = 586

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 9/62 (14%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C  C  C   CP  AI             +  RY+ +  KC  CG C   CPV AI   
Sbjct: 492 NCFECDGCFGSCPEDAI---------IKLGKGKRYEFNYAKCTGCGTCYRQCPVHAIEMV 542

Query: 122 PN 123
             
Sbjct: 543 SE 544


>gi|311067708|ref|YP_003972631.1| iron-sulfur binding domain-containing protein [Bacillus atrophaeus
           1942]
 gi|310868225|gb|ADP31700.1| iron-sulfur binding domain-containing protein [Bacillus atrophaeus
           1942]
          Length = 984

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 9/101 (8%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            ++         + PF++      +  + +   Y    ++CI C  C   C    +T   
Sbjct: 113 TVKEM--KINHQSIPFDQKP----YHKDESHPFYRYDPDQCILCGRCVEACQDVQVTETL 166

Query: 83  GPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPVDAIVE 120
                    R +  +   I+   C+ CG C   CP +A++E
Sbjct: 167 TIDWERKRPRVIWDNDVPINESSCVSCGHCSTVCPCNAMME 207



 Score = 40.9 bits (94), Expect = 0.062,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 21/66 (31%), Gaps = 9/66 (13%)

Query: 57  PNGEERCIAC----KLCEAICPA-----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
            N E  C  C      CE             +I    + +        Y  D  +CI CG
Sbjct: 92  YNHELYCTVCDYNNGGCEIHNTVKEMKINHQSIPFDQKPYHKDESHPFYRYDPDQCILCG 151

Query: 108 LCQEAC 113
            C EAC
Sbjct: 152 RCVEAC 157


>gi|302388830|ref|YP_003824651.1| NADH dehydrogenase (quinone) [Thermosediminibacter oceani DSM
           16646]
 gi|302199458|gb|ADL07028.1| NADH dehydrogenase (quinone) [Thermosediminibacter oceani DSM
           16646]
          Length = 583

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 37/98 (37%), Gaps = 15/98 (15%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
             LRY F+ +   +   +K           AL  Y    E+C +C LC   CP  AI   
Sbjct: 499 TTLRY-FRDEYEAHIKDKKCPAKQC----KALIAYRIDAEKCKSCGLCARKCPVNAIKGS 553

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            G            Y+I + KC  CG C + C   A+ 
Sbjct: 554 KGQP----------YEIVLEKCTKCGTCMQVCRFGAVF 581



 Score = 40.9 bits (94), Expect = 0.060,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 19/44 (43%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            I+         +  + Y ID  KC  CGLC   CPV+AI    
Sbjct: 511 HIKDKKCPAKQCKALIAYRIDAEKCKSCGLCARKCPVNAIKGSK 554


>gi|297584190|ref|YP_003699970.1| pyruvate/ketoisovalerate oxidoreductase subunit gamma [Bacillus
           selenitireducens MLS10]
 gi|297142647|gb|ADH99404.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit [Bacillus
           selenitireducens MLS10]
          Length = 337

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           E CI C  C+ +CP      E G     G  +     ID   C  C  C +ACP DA+
Sbjct: 254 ESCIHCAACDTVCPDYCFVWEQGEDKK-GRPQMFLKGIDYQYCKGCLKCVDACPTDAL 310


>gi|126667558|ref|ZP_01738528.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB
           [Marinobacter sp. ELB17]
 gi|126627984|gb|EAZ98611.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB
           [Marinobacter sp. ELB17]
          Length = 211

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 28/82 (34%), Gaps = 10/82 (12%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E            A R     E+ CI C  C   CP  AI          G  + +   I
Sbjct: 92  EPQPLDAEHGAAQAKRVAVIREDECIGCTKCIQACPVDAI---------LGAAKHMHTVI 142

Query: 99  DMIKCIYCGLCQEACPVDAIVE 120
              +C  C LC E CPVD I  
Sbjct: 143 -ESECTGCDLCVEPCPVDCIDM 163


>gi|134299648|ref|YP_001113144.1| hydrogenase large subunit [Desulfotomaculum reducens MI-1]
 gi|134052348|gb|ABO50319.1| hydrogenase large subunit domain protein [Desulfotomaculum reducens
           MI-1]
          Length = 462

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110
              +  C+ C  C   CP  AI   + P       + ++ D      ID   C  CGLC 
Sbjct: 124 FIDQNSCVECGKCANACPYNAIIEVTRPCERACALKAIKVDDSRKAVIDHELCASCGLCV 183

Query: 111 EACPVDAI 118
             CP  AI
Sbjct: 184 TVCPFGAI 191



 Score = 39.3 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 5/63 (7%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTV-----RYDIDMIKCIYCGLCQEACPVDA 117
           C  C L + +         + P  +   ++ +     R  ID   C+ CG C  ACP +A
Sbjct: 85  CNGCSLNKYVVTDACQNCVAHPCRNSCPKKAISVIQNRAFIDQNSCVECGKCANACPYNA 144

Query: 118 IVE 120
           I+E
Sbjct: 145 IIE 147


>gi|304408661|ref|ZP_07390282.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella
           baltica OS183]
 gi|307305490|ref|ZP_07585238.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella
           baltica BA175]
 gi|304352482|gb|EFM16879.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella
           baltica OS183]
 gi|306911793|gb|EFN42218.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella
           baltica BA175]
          Length = 882

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 11/109 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114
            E+ CI C  C   CPA        P+      +   YD     ++  CI CG C   CP
Sbjct: 375 EEKACIRCGECATACPA-----LLLPQQLFWHAKAEEYDKAASYNLKDCIECGCCSYVCP 429

Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
              I     +  A    ++   +K++      R+++ + R +  +   R
Sbjct: 430 -SDIPLVEYYRIAKSALKQAADEKQQAERAKQRFDARLAR-LEEEKLAR 476


>gi|291522103|emb|CBK80396.1| electron transport complex, RnfABCDGE type, B subunit [Coprococcus
           catus GD/7]
          Length = 256

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 27/90 (30%), Gaps = 11/90 (12%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
                  PFEK         +         +  CI C  C   C   AI + +       
Sbjct: 178 KHVIALVPFEKKHHVLCVNTDKGAEAMKVCKTSCIGCMKCVKTCEHDAIHVTNFNAA--- 234

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
                   ID  KC  CG C E CP  AI 
Sbjct: 235 --------IDYDKCTNCGACAEVCPKHAIC 256



 Score = 37.4 bits (85), Expect = 0.76,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 5/69 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV-----RYDIDMIKCIYCGLCQEAC 113
            +++C+ C +C   CP   I +    + H               +    CI C  C + C
Sbjct: 162 DQDKCVGCGICVKTCPKHVIALVPFEKKHHVLCVNTDKGAEAMKVCKTSCIGCMKCVKTC 221

Query: 114 PVDAIVEGP 122
             DAI    
Sbjct: 222 EHDAIHVTN 230



 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 11/67 (16%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
                  C+    C A+CP +AI +  G              ID  KC+ CG+C + CP 
Sbjct: 130 DSTCAYGCLGHGDCAAVCPEKAIIVHDGLAM-----------IDQDKCVGCGICVKTCPK 178

Query: 116 DAIVEGP 122
             I   P
Sbjct: 179 HVIALVP 185


>gi|290956205|ref|YP_003487387.1| respiratory chain oxidoreductase [Streptomyces scabiei 87.22]
 gi|260645731|emb|CBG68822.1| putative respiratory chain oxidoreductase [Streptomyces scabiei
           87.22]
          Length = 286

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 4/75 (5%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID----MIKCIYCGLCQE 111
           Y    ++CI C  C   C +Q     +      G    +  + D       C+YCG C E
Sbjct: 145 YVRDYDKCILCYKCVDACGSQWQNSFAISVVGRGFDARIAVEHDGPLTDSACVYCGNCVE 204

Query: 112 ACPVDAIVEGPNFEF 126
            CP  A+     F+ 
Sbjct: 205 VCPTGALSFKSEFDM 219


>gi|154483117|ref|ZP_02025565.1| hypothetical protein EUBVEN_00818 [Eubacterium ventriosum ATCC
           27560]
 gi|149735925|gb|EDM51811.1| hypothetical protein EUBVEN_00818 [Eubacterium ventriosum ATCC
           27560]
          Length = 504

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 6/66 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQEA 112
            +++CI C  C + CP  A+  +  P                R DID  +C+ CG+C  +
Sbjct: 146 DQDKCIKCGKCASACPYNAVVKQERPCAKACGMNAIKSDEYGRADIDYDQCVSCGMCLVS 205

Query: 113 CPVDAI 118
           CP  AI
Sbjct: 206 CPFSAI 211



 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 20/61 (32%), Gaps = 5/61 (8%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTR-----RTVRYDIDMIKCIYCGLCQEACPVDA 117
           C AC                 P      +        R  ID  KCI CG C  ACP +A
Sbjct: 105 CHACPEKRVFITNACQGCLEHPCIEVCPKDAIKMVKGRSVIDQDKCIKCGKCASACPYNA 164

Query: 118 I 118
           +
Sbjct: 165 V 165


>gi|217973446|ref|YP_002358197.1| electron transport complex protein RnfC [Shewanella baltica OS223]
 gi|217498581|gb|ACK46774.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella
           baltica OS223]
          Length = 876

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 11/109 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114
            E+ CI C  C   CPA        P+      +   YD     ++  CI CG C   CP
Sbjct: 375 EEKACIRCGECATACPA-----LLLPQQLFWHAKAEEYDKAASYNLKDCIECGCCSYVCP 429

Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
              I     +  A    ++   +K++      R+++ + R +  +   R
Sbjct: 430 -SDIPLVEYYRIAKSALKQAADEKQQAERAKQRFDARLAR-LEEEKLAR 476


>gi|160875223|ref|YP_001554539.1| electron transport complex protein RnfC [Shewanella baltica OS195]
 gi|160860745|gb|ABX49279.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella
           baltica OS195]
 gi|315267416|gb|ADT94269.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella
           baltica OS678]
          Length = 888

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 11/109 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114
            E+ CI C  C   CPA        P+      +   YD     ++  CI CG C   CP
Sbjct: 375 EEKACIRCGECATACPA-----LLLPQQLFWHAKAEEYDKAASYNLKDCIECGCCSYVCP 429

Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
              I     +  A    ++   +K++      R+++ + R +  +   R
Sbjct: 430 -SDIPLVEYYRIAKSALKQAADEKQQAERAKQRFDARLAR-LEEEKLAR 476


>gi|78044500|ref|YP_359586.1| Fe-hydrogenase subunit beta [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77996615|gb|ABB15514.1| Fe-hydrogenase, beta subunit [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 592

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/99 (32%), Positives = 43/99 (43%), Gaps = 15/99 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            LRY F+ +   +   +K           AL  Y   E++C+ C  C  +CP  AI+ E 
Sbjct: 509 TLRY-FRHEYEAHIYDKKCPAGVC----AALLEYKILEDKCVGCGACARVCPVGAISGE- 562

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
                    R   + ID  KCI CG C E C   AIV+G
Sbjct: 563 ---------RKQPHQIDPEKCIKCGSCMEKCKFGAIVKG 592


>gi|126090184|ref|YP_001041665.1| electron transport complex protein RnfC [Shewanella baltica OS155]
 gi|126174477|ref|YP_001050626.1| electron transport complex protein RnfC [Shewanella baltica OS155]
 gi|125997682|gb|ABN61757.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella
           baltica OS155]
 gi|125999840|gb|ABN63910.1| hypothetical protein Sbal_4547 [Shewanella baltica OS155]
          Length = 884

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 11/109 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114
            E+ CI C  C   CPA        P+      +   YD     ++  CI CG C   CP
Sbjct: 375 EEKACIRCGECATACPA-----LLLPQQLFWHAKAEEYDKAASYNLKDCIECGCCSYVCP 429

Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
              I     +  A    ++   +K++      R+++ + R +  +   R
Sbjct: 430 -SDIPLVEYYRIAKSALKQAADEKQQAERAKQRFDARLAR-LEEEKLAR 476


>gi|220909729|ref|YP_002485040.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing
           protein [Cyanothece sp. PCC 7425]
 gi|219866340|gb|ACL46679.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Cyanothece sp. PCC 7425]
          Length = 1193

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 36/116 (31%), Gaps = 30/116 (25%)

Query: 58  NGEERCIACKLCEAICPAQ--------------AITIESGPRCHDGTRRTVRYDID--MI 101
              + C+ C  C  +CP                A T        D     +++ I     
Sbjct: 683 WEPDLCVQCGKCVMVCPHAVIRSKVYTPDHLETAPTEFKSANARDHDWTDLKFTIQVAAE 742

Query: 102 KCIYCGLCQEACPVD--------AIVEGPNFEFATETRQ--ELYYDKERLLNNGDR 147
            C  CG+C + CP          AI   P      + RQ  + + D    L N DR
Sbjct: 743 DCTGCGICVDVCPARSKSEARLKAINMQPQLPLREQERQNWDFFLD----LPNPDR 794


>gi|16078281|ref|NP_389098.1| oxidoreductase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221309064|ref|ZP_03590911.1| hypothetical protein Bsubs1_06726 [Bacillus subtilis subsp.
           subtilis str. 168]
 gi|221313391|ref|ZP_03595196.1| hypothetical protein BsubsN3_06662 [Bacillus subtilis subsp.
           subtilis str. NCIB 3610]
 gi|221318314|ref|ZP_03599608.1| hypothetical protein BsubsJ_06601 [Bacillus subtilis subsp.
           subtilis str. JH642]
 gi|221322587|ref|ZP_03603881.1| hypothetical protein BsubsS_06707 [Bacillus subtilis subsp.
           subtilis str. SMY]
 gi|81342378|sp|O34720|YJGC_BACSU RecName: Full=Probable oxidoreductase yjgC
 gi|2612888|gb|AAC46312.1| formate dehydrogenase alpha subunit homolog [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|2633570|emb|CAB13073.1| putative oxidoreductase [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 985

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 9/101 (8%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            ++         + PF+       +  + +   Y    ++CI C  C   C    +T   
Sbjct: 114 TVKEM--KINHQSIPFDHKP----YHKDESHPFYRYDPDQCILCGRCVEACQDVQVTETL 167

Query: 83  GPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPVDAIVE 120
                    R +  +   I+   C+ CG C   CP +A++E
Sbjct: 168 TIDWERKRPRVIWDNDVPINESSCVSCGHCSTVCPCNAMME 208



 Score = 40.5 bits (93), Expect = 0.074,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 21/66 (31%), Gaps = 9/66 (13%)

Query: 57  PNGEERCIAC----KLCEAICPA-----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
            N E  C  C      CE             +I    + +        Y  D  +CI CG
Sbjct: 93  YNHELYCTVCDYNNGGCEIHNTVKEMKINHQSIPFDHKPYHKDESHPFYRYDPDQCILCG 152

Query: 108 LCQEAC 113
            C EAC
Sbjct: 153 RCVEAC 158


>gi|260893624|ref|YP_003239721.1| hydrogenase, Fe-only [Ammonifex degensii KC4]
 gi|260865765|gb|ACX52871.1| hydrogenase, Fe-only [Ammonifex degensii KC4]
          Length = 583

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 8/95 (8%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP----AQAITIESGPRCHD 88
           T+  P       P      A+ R PN   +CI C+ CE++C       AI ++       
Sbjct: 122 TVRIPALPRKELPLDTSTVAIIRDPN---KCIVCRRCESVCHNIQTVGAIALQGKGFAAT 178

Query: 89  GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                 RY +D   C+ CG C   CPV AI E  +
Sbjct: 179 VAPVGGRY-LDETNCVQCGQCALVCPVGAIYERDD 212


>gi|254451106|ref|ZP_05064543.1| iron-sulfur cluster-binding protein [Octadecabacter antarcticus
           238]
 gi|198265512|gb|EDY89782.1| iron-sulfur cluster-binding protein [Octadecabacter antarcticus
           238]
          Length = 649

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 33/106 (31%), Gaps = 12/106 (11%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
             R   +       P  K    P      A+    +    C  C  C ++CP+ A+    
Sbjct: 464 TRRQVARLSAKALNPDAKLLPLPDNAPYGAVVVDTD---ACTLCLACVSLCPSGALGDNP 520

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
                       +       C+ CGLC   CP  AI   P F+ + 
Sbjct: 521 D---------LPQLRFQESACLQCGLCANICPEKAITLKPQFDLSD 557



 Score = 38.5 bits (88), Expect = 0.31,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 18/53 (33%), Gaps = 11/53 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C  +CP  AI                   ID + C  CG C   CP  AI
Sbjct: 279 CSNCLNVCPTGAILSAGE-----------VVSIDPLICAGCGACSAVCPSGAI 320


>gi|188589360|ref|YP_001921432.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum E3 str. Alaska E43]
 gi|188499641|gb|ACD52777.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum E3 str. Alaska E43]
          Length = 626

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 10/68 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L  Y   +++C  C  C  +CPA AIT E              Y ID  KCI CG C + 
Sbjct: 568 LMSYEIDKDKCKGCSKCARMCPAGAITGEIKKP----------YTIDQSKCIKCGACMDG 617

Query: 113 CPVDAIVE 120
           C   AI  
Sbjct: 618 CAFKAIQL 625


>gi|156977574|ref|YP_001448480.1| oxidoreductase [Vibrio harveyi ATCC BAA-1116]
 gi|156529168|gb|ABU74253.1| hypothetical protein VIBHAR_06362 [Vibrio harveyi ATCC BAA-1116]
          Length = 1412

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 14/79 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIE--------------SGPRCHDGTRRTVRYDIDMIKCI 104
              RCI+C  C   C  +A+                    R H G+ +     +    C+
Sbjct: 631 DANRCISCGQCIQACRDKAVHGVLNFVCDKQGRPALRPDDRPHFGSNKNGLTLMGDSNCV 690

Query: 105 YCGLCQEACPVDAIVEGPN 123
            CG C + CP  A+V+  +
Sbjct: 691 QCGACVQVCPTGAMVDSRD 709


>gi|157375410|ref|YP_001474010.1| putative pyruvate oxidoreductase [Shewanella sediminis HAW-EB3]
 gi|157317784|gb|ABV36882.1| putative pyruvate oxidoreductase [Shewanella sediminis HAW-EB3]
          Length = 1197

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 37/116 (31%), Gaps = 20/116 (17%)

Query: 58  NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY--DIDMI 101
              E CI C  C  +CP                A T               RY   +   
Sbjct: 694 WDREICIQCGNCAIVCPHAAIRAKFYNKRRLQGAPTTFPSSNVTSRGFPDARYTLQVYAD 753

Query: 102 KCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIV 157
            C  CGLC +ACPV+   +  +     + +++   D+ R L     +   I  N  
Sbjct: 754 DCTGCGLCVKACPVNHTADEHHHAINMQNKEKHLQDERRNLE----FFETIAYNRR 805


>gi|301062302|ref|ZP_07202968.1| pyridine nucleotide-disulfide oxidoreductase [delta proteobacterium
           NaphS2]
 gi|300443602|gb|EFK07701.1| pyridine nucleotide-disulfide oxidoreductase [delta proteobacterium
           NaphS2]
          Length = 722

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 1/64 (1%)

Query: 63  CIACKLCEAICPAQAITIE-SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           CI C  C  IC  +           +   R    + +   +CI CG C   CP +AI   
Sbjct: 585 CIRCGACVDICRNKMGVDALQFGYLNFDHREPTDFRVTAERCILCGACAANCPTEAISMA 644

Query: 122 PNFE 125
              E
Sbjct: 645 DVGE 648


>gi|323703026|ref|ZP_08114682.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
 gi|323532039|gb|EGB21922.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
          Length = 613

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 26/75 (34%), Gaps = 10/75 (13%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            AL  Y    + C  C  C   CP  AIT E              + I+   C  CGLC 
Sbjct: 542 KALISYRVLADACKGCGRCSRECPTGAITGEKKMP----------FTINQEMCARCGLCI 591

Query: 111 EACPVDAIVEGPNFE 125
             C  +AI      E
Sbjct: 592 SVCKFNAITVTTGKE 606



 Score = 38.2 bits (87), Expect = 0.45,   Method: Composition-based stats.
 Identities = 10/49 (20%), Positives = 14/49 (28%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           +         I          +  + Y +    C  CG C   CP  AI
Sbjct: 521 KYFRHEYEAHIFDKACPAKKCKALISYRVLADACKGCGRCSRECPTGAI 569


>gi|291563047|emb|CBL41863.1| Iron only hydrogenase large subunit, C-terminal domain
           [butyrate-producing bacterium SS3/4]
          Length = 513

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 6/66 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR------YDIDMIKCIYCGLCQEA 112
             ++CI C  C  +C   AI I+  P         +        DI+  KC+ CG C   
Sbjct: 156 DPDKCIKCGQCANVCAYHAIIIQERPCAAACGMDAIHSDENGKADINYDKCVSCGQCLVN 215

Query: 113 CPVDAI 118
           CP  AI
Sbjct: 216 CPFGAI 221



 Score = 39.3 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 28/92 (30%), Gaps = 9/92 (9%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
              T   P                R Y     +      C  +CP  A++++        
Sbjct: 96  KPETYYTPPLINVIKFACNACPEKRVYVTDGCQGCLAHPCVEVCPKDAVSLD-------- 147

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            R   R  ID  KCI CG C   C   AI+  
Sbjct: 148 -RTNGRSRIDPDKCIKCGQCANVCAYHAIIIQ 178


>gi|224369752|ref|YP_002603916.1| HydA2 [Desulfobacterium autotrophicum HRM2]
 gi|223692469|gb|ACN15752.1| HydA2 [Desulfobacterium autotrophicum HRM2]
          Length = 599

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 9/85 (10%)

Query: 59  GEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
              +CI C  C  +C       A+   +               ++   CI CG C   CP
Sbjct: 148 DMSKCIRCFRCVKVCREIQGIDALV-ITQKGLETEISVRDHLPLNESDCISCGQCILVCP 206

Query: 115 VDAIVEGPNFEFATETRQELYYDKE 139
           V A+    N E A     +L Y+ E
Sbjct: 207 VGALAGRNNIEDAM----DLIYNPE 227


>gi|207742645|ref|YP_002259037.1| ferredoxin protein [Ralstonia solanacearum IPO1609]
 gi|206594039|emb|CAQ60966.1| ferredoxin protein [Ralstonia solanacearum IPO1609]
          Length = 708

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 9/74 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              RC  C  C + CP+QA+  ++               +    C+ CGLC+  CP DAI
Sbjct: 576 DRARCTLCMACVSACPSQALRDQAE---------QPVLSMIERNCVQCGLCETTCPEDAI 626

Query: 119 VEGPNFEFATETRQ 132
              P    +   RQ
Sbjct: 627 ALVPRLNLSAGARQ 640



 Score = 41.6 bits (96), Expect = 0.035,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 7/55 (12%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C+ C  +C A AIT +                +    C+ CG C  ACP  A+
Sbjct: 323 VGCEACVQVCSAAAITSQWKDGRGSVH-------VTPNLCVGCGACTTACPTGAL 370



 Score = 38.5 bits (88), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 20/48 (41%)

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               A  +T   G       +   R  ID+ +C  C  C +ACP DAI
Sbjct: 168 WPVHAGELTQVGGWLGAFDVQWRSRNPIDLDRCTRCNACIDACPEDAI 215



 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 1/66 (1%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-IDMI 101
            S   R +         E  C+ C LCE  CP  AI +        G R+ V  +  +  
Sbjct: 591 PSQALRDQAEQPVLSMIERNCVQCGLCETTCPEDAIALVPRLNLSAGARQPVTLNATEPF 650

Query: 102 KCIYCG 107
            CI CG
Sbjct: 651 HCIRCG 656



 Score = 35.5 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 32/118 (27%), Gaps = 21/118 (17%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYP-----NGEERCIACKLCEAICPAQAITIESGP 84
                 +P   G  +       A             +RC  C  C   CP  AI      
Sbjct: 162 PPMARRWPVHAGELTQVGGWLGAFDVQWRSRNPIDLDRCTRCNACIDACPEDAID----- 216

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEAC-PVDAIVEGPNFEFATET-RQELYYDKER 140
                      Y ID+  C     C +AC    AI  G      T   R +L +D   
Sbjct: 217 ---------TLYQIDLDACRDHRDCVKACGEAMAIDFGRLDAPQTYAGRFDLIFDLND 265


>gi|170696011|ref|ZP_02887149.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia
           graminis C4D1M]
 gi|170139091|gb|EDT07281.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia
           graminis C4D1M]
          Length = 413

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 11/68 (16%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             LR++    E CI C  CE  CP  AIT +              Y +    C  C  C 
Sbjct: 8   EVLRQHLIDPEICIRCNTCEETCPIDAITHDDN-----------NYVVKADVCNGCMACV 56

Query: 111 EACPVDAI 118
             CP  AI
Sbjct: 57  PPCPTGAI 64



 Score = 37.0 bits (84), Expect = 0.95,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPN 123
           ID   CI C  C+E CP+DAI    N
Sbjct: 15  IDPEICIRCNTCEETCPIDAITHDDN 40


>gi|168187508|ref|ZP_02622143.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium
           botulinum C str. Eklund]
 gi|169294609|gb|EDS76742.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium
           botulinum C str. Eklund]
          Length = 1168

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/130 (23%), Positives = 41/130 (31%), Gaps = 26/130 (20%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTRRTVRYDIDMIK--- 102
            A+       E CI C  C  +CP   I     T E      +G +      I   K   
Sbjct: 676 IAINVPEWSMENCIQCNQCSYVCPHAVIRPTLLTEEEYKNKPEGFKAVEAKGIKGEKLYY 735

Query: 103 --------CIYCGLCQEAC--PVDAIVEGP----NFEFATETRQELYYDKE----RLLNN 144
                   C  CG C E C  P  A+V  P      E A     +    KE    +    
Sbjct: 736 SMNVSVLDCTGCGNCAEVCPAPTKALVMKPSATQEAEQANYDYAQTLAVKENPMDKYTVK 795

Query: 145 GDRWESEIVR 154
           G ++E  ++ 
Sbjct: 796 GSQFEKPLLE 805


>gi|218780619|ref|YP_002431937.1| methyl-viologen-reducing hydrogenase delta subunit
           [Desulfatibacillum alkenivorans AK-01]
 gi|218762003|gb|ACL04469.1| Putative uncharacterized protein (contains partial HdrA and MvhD
           domains) [Desulfatibacillum alkenivorans AK-01]
          Length = 532

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 15/79 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++C  C  C   CP  AI  +S            R  I    C  CG+C   CP DAI
Sbjct: 335 DVDKCTVCLTCYRCCPHGAIYWDS------------RAIIAESACQGCGICASECPNDAI 382

Query: 119 VEGPNFEFATETRQELYYD 137
             G   ++A +   +   D
Sbjct: 383 QLG---DYADDAMAQAIKD 398


>gi|221135173|ref|ZP_03561476.1| electron transport complex protein RnfB [Glaciecola sp. HTCC2999]
          Length = 193

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 31/96 (32%), Gaps = 10/96 (10%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E          E   +     E  CI C  C   CP  AI   S             + +
Sbjct: 90  EPKPLDGDHGVEEVKKVAYIREAECIGCTKCIQACPVDAIIGASKQ----------MHTV 139

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134
            + +C  C LC   CPVD I   P  E     + +L
Sbjct: 140 IVDECTGCDLCVAPCPVDCIDMLPVKETPQTWQWDL 175


>gi|86358877|ref|YP_470769.1| dihydropyrimidine dehydrogenase [Rhizobium etli CFN 42]
 gi|86282979|gb|ABC92042.1| probable dihydroorotate oxidase protein [Rhizobium etli CFN 42]
          Length = 437

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 31/94 (32%), Gaps = 6/94 (6%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI C  C       A    S             +++   +C+ 
Sbjct: 330 QYLNLNYVAKAKIDQDACIKCGRCHI-----ACEDTSHQAITSVVNGLRHFEVIEEECVG 384

Query: 106 CGLCQEACPV-DAIVEGPNFEFATETRQELYYDK 138
           C LC   CPV + I   P      + R     D 
Sbjct: 385 CNLCVNVCPVENCITMEPLAAGTIDKRTGRVVDP 418


>gi|328912744|gb|AEB64340.1| Putative formate dehydrogenase yrhE [Bacillus amyloliquefaciens
           LL3]
          Length = 982

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 4/91 (4%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+     S     + +   Y     +CIAC  C  +C    +             R
Sbjct: 126 HQKYPYTPKDDSKCAV-DMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWERDRPR 184

Query: 93  TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120
            +  +   I+   C+ CG C   CP +A++E
Sbjct: 185 VIWDEGVAINESSCVSCGQCVTVCPCNALME 215


>gi|309389874|gb|ADO77754.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Halanaerobium praevalens DSM 2228]
          Length = 601

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 29/64 (45%), Gaps = 10/64 (15%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            Y   EE CI C  C  +CP  AI+ E              + ID   CI CG C+  CP
Sbjct: 545 YYIIDEEACIGCSKCSKVCPVDAISGEIK----------NPFKIDPDVCIACGACEPECP 594

Query: 115 VDAI 118
           VDAI
Sbjct: 595 VDAI 598


>gi|332652559|ref|ZP_08418304.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Ruminococcaceae
           bacterium D16]
 gi|332517705|gb|EGJ47308.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Ruminococcaceae
           bacterium D16]
          Length = 1181

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 31/103 (30%), Gaps = 18/103 (17%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-----------------QAITI 80
           FE G+ +   RG   +        +CI C  C  +CP                  +A  I
Sbjct: 672 FELGAAAYEKRGVAVMVPTW-DATKCIQCNQCSFVCPHATIRPFMLTEEEAAAAPEAAKI 730

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                            I  + C+ C +C   CP  A+   P 
Sbjct: 731 VDVKAGKGKGVYKFAMAISPLDCMGCTVCAGVCPTKALTMVPQ 773


>gi|299537486|ref|ZP_07050780.1| formate dehydrogenase alpha chain [Lysinibacillus fusiformis ZC1]
 gi|298727047|gb|EFI67628.1| formate dehydrogenase alpha chain [Lysinibacillus fusiformis ZC1]
          Length = 978

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP++          + +   Y     +CIAC  C  +C    +             R
Sbjct: 119 HQKYPYQPKVEP--HEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSLDWEAERPR 176

Query: 93  TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120
            +      I+   C+ CG C   CP +A++E
Sbjct: 177 VIWDTGVAINDSSCVSCGQCVTVCPCNALME 207



 Score = 40.1 bits (92), Expect = 0.095,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 22/71 (30%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGP-------RCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C     A+ + IE            H+       Y  D  +
Sbjct: 87  RLLENHLLYCTVCDNNNGNCALHNTAEMMEIEHQKYPYQPKVEPHEVDMSHPFYRYDPNQ 146

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 147 CIACGQCVEVC 157


>gi|295091990|emb|CBK78097.1| Uncharacterized Fe-S center protein [Clostridium cf.
           saccharolyticum K10]
          Length = 368

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 11/64 (17%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           +++CI C  CE  C   AI+                  ID  KC+ CG C   CPVDA+ 
Sbjct: 194 QDQCIGCHACERDCAHGAISFPEKKAF-----------IDESKCVGCGRCIGVCPVDAVA 242

Query: 120 EGPN 123
              +
Sbjct: 243 NHCD 246


>gi|307729116|ref|YP_003906340.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia sp.
           CCGE1003]
 gi|307583651|gb|ADN57049.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia sp.
           CCGE1003]
          Length = 412

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 11/68 (16%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             LR++    E CI C  CE  CP  AIT +              Y +    C  C  C 
Sbjct: 8   EVLRQHLIDPEICIRCNTCEETCPIDAITHDEN-----------NYVVKADVCNGCMACV 56

Query: 111 EACPVDAI 118
             CP  AI
Sbjct: 57  PPCPTGAI 64



 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPN 123
           ID   CI C  C+E CP+DAI    N
Sbjct: 15  IDPEICIRCNTCEETCPIDAITHDEN 40


>gi|239628141|ref|ZP_04671172.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518287|gb|EEQ58153.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 483

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 25/68 (36%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110
                +C  C  C   CP  AI     P         + YD      ID  KCI CG C 
Sbjct: 125 YIDPAKCKECGKCSQACPYNAIAHLERPCKKICPVDAITYDEYGICVIDEKKCIQCGACI 184

Query: 111 EACPVDAI 118
            +CP  AI
Sbjct: 185 HSCPFGAI 192


>gi|157962813|ref|YP_001502847.1| FAD linked oxidase domain-containing protein [Shewanella pealeana
           ATCC 700345]
 gi|157847813|gb|ABV88312.1| FAD linked oxidase domain protein [Shewanella pealeana ATCC 700345]
          Length = 939

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 9/93 (9%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           E +     I  +         +     D  + KCI CG C++ CP  A+   P    AT 
Sbjct: 509 EGLLNPGVILNDDNQIHVKNIKPCPVVDDLVDKCIECGFCEKTCPTSALNMSPRQRIATL 568

Query: 130 TRQELYYDKERLLNNGDRWESEIVRNIVTDSPY 162
            R+      ERL  +GD+   +    +   + Y
Sbjct: 569 -RE-----IERLEQSGDK---QAAEQMRAAAKY 592



 Score = 37.4 bits (85), Expect = 0.64,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 18/76 (23%)

Query: 57  PNGEERCIACKLCEAICPAQAITIES-----------------GPRCHDGTRRTVRYDID 99
            +  ++CI C  CE  CP  A+ +                     +  +  R   +YD+ 
Sbjct: 536 DDLVDKCIECGFCEKTCPTSALNMSPRQRIATLREIERLEQSGDKQAAEQMRAAAKYDVV 595

Query: 100 MIKCIYCGLCQEACPV 115
              C  C LC  ACPV
Sbjct: 596 -DTCAACQLCTIACPV 610


>gi|328554340|gb|AEB24832.1| YrhE [Bacillus amyloliquefaciens TA208]
          Length = 980

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 4/91 (4%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+     S     + +   Y     +CIAC  C  +C    +             R
Sbjct: 124 HQKYPYTPKDDSKCAV-DMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWERDRPR 182

Query: 93  TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120
            +  +   I+   C+ CG C   CP +A++E
Sbjct: 183 VIWDEGVAINESSCVSCGQCVTVCPCNALME 213


>gi|217966957|ref|YP_002352463.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724]
 gi|217336056|gb|ACK41849.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724]
          Length = 624

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/67 (38%), Positives = 29/67 (43%), Gaps = 10/67 (14%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           A +RY    E C  C LC   CP  AI+ E G            Y ID  KC  CG+C E
Sbjct: 565 AFKRYVINPELCKGCGLCARFCPQNAISGERGKP----------YVIDQEKCAKCGVCVE 614

Query: 112 ACPVDAI 118
            C   AI
Sbjct: 615 KCKFKAI 621



 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 15/39 (38%)

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              G           RY I+   C  CGLC   CP +AI
Sbjct: 553 HIEGICPSGMCTAFKRYVINPELCKGCGLCARFCPQNAI 591


>gi|187776798|ref|ZP_02993271.1| hypothetical protein CLOSPO_00314 [Clostridium sporogenes ATCC
           15579]
 gi|187775457|gb|EDU39259.1| hypothetical protein CLOSPO_00314 [Clostridium sporogenes ATCC
           15579]
          Length = 398

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 12/58 (20%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           E+C AC +CE  CP  AI + +G    +             KC  CG C EACP DAI
Sbjct: 8   EKCKACGICEKQCPFDAIHVINGLAEVN------------EKCTICGACVEACPFDAI 53



 Score = 37.0 bits (84), Expect = 0.97,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 98  IDMIKCIYCGLCQEACPVDAIV 119
           I   KC  CG+C++ CP DAI 
Sbjct: 5   IIKEKCKACGICEKQCPFDAIH 26


>gi|117920614|ref|YP_869806.1| electron transport complex protein RnfC [Shewanella sp. ANA-3]
 gi|117612946|gb|ABK48400.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella
           sp. ANA-3]
          Length = 788

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 42/126 (33%), Gaps = 11/126 (8%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
           TI  P  KG+          +   P   + CI C  C       A      P+      +
Sbjct: 349 TIQVPILKGTNCILVPSSQEIGTTPEE-KACIRCGECA-----NACPALLLPQQLFWHAK 402

Query: 93  TVRYD----IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRW 148
              YD     ++  CI CG C   CP   I     +  A    ++   +K +      R+
Sbjct: 403 AEEYDKAASYNLKDCIECGCCSYVCP-SDIPLVEYYRIAKSALKQAADEKHQAERAKQRF 461

Query: 149 ESEIVR 154
           E+ I R
Sbjct: 462 EARIQR 467


>gi|110834472|ref|YP_693331.1| electron transport complex protein RnfC [Alcanivorax borkumensis
           SK2]
 gi|110647583|emb|CAL17059.1| electron transport complex protein rnfC [Alcanivorax borkumensis
           SK2]
          Length = 991

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 12/97 (12%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C  C  +CPA  +  +      +      ++  +++ CI CG C   CP   I    
Sbjct: 398 CIRCGSCAEVCPANLLPQQLYWHAKNDDLEKAQH-HNLMDCIECGACAYVCPSH-IPLVQ 455

Query: 123 NFEFAT-ETRQ----ELYYDKERLLNNGDRWESEIVR 154
            + +A  E RQ    +L  DK R      R+E+   R
Sbjct: 456 YYRYAKAEVRQQAADQLKADKAR-----QRFEARQAR 487


>gi|328952277|ref|YP_004369611.1| Pyruvate dehydrogenase (NADP(+)), 2-oxoglutarate synthase
           [Desulfobacca acetoxidans DSM 11109]
 gi|328452601|gb|AEB08430.1| Pyruvate dehydrogenase (NADP(+))., 2-oxoglutarate synthase
           [Desulfobacca acetoxidans DSM 11109]
          Length = 1292

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 36/144 (25%), Gaps = 32/144 (22%)

Query: 2   RIFRCNVSFLFLKE---FVGAFFLCLRYF--FKAKTTINYPFEKGSTSPRFRGEHALRRY 56
            +        +L+     +    +   +F       T  Y          F G       
Sbjct: 745 NLIPNYQEIFYLEMVHPLIEGRRISWDHFLPVVPAATTRYRDV------SFIGTQLPVWD 798

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRC------------------HDGTRRTVRYDI 98
                +C AC  C A CP  A+      R                       R  +  D 
Sbjct: 799 A---AKCTACGTCTASCPDSALFCTVTERPIPEEYERFFKVFKKPPKGVPWERFAMNIDA 855

Query: 99  DMIKCIYCGLCQEACPVDAIVEGP 122
               C  CG+C   CP +A+    
Sbjct: 856 VPSACKGCGVCAAVCPTNALRMVD 879


>gi|288575050|ref|ZP_06393407.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570791|gb|EFC92348.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 1173

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 16/88 (18%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQA----------------ITIESGPRCHDGTRRTV 94
            A+       ++CI C  C  +CP  A                       +  +      
Sbjct: 679 VAIDVPEWIMDKCIQCNQCAMVCPHAAIRPVLLNEDEMSLAPKNFEVIDAKGKELEGLKF 738

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           R  +  + C+ CG C + CPV A+   P
Sbjct: 739 RMQVSPLDCLGCGNCADICPVKALEMKP 766


>gi|86359332|ref|YP_471224.1| NADH-ubiquinone oxidoreductase chain G protein [Rhizobium etli CFN
           42]
 gi|86283434|gb|ABC92497.1| NADH-ubiquinone oxidoreductase chain G protein [Rhizobium etli CFN
           42]
          Length = 859

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 3/80 (3%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           +   S   R    +    N   RCI C+ C  +C      +  G            ++  
Sbjct: 128 RVFHSQDIRLSPVIIMNVN---RCIQCQRCVRMCEEVVGAVALGTVEKGMDTAVTGFEGS 184

Query: 100 MIKCIYCGLCQEACPVDAIV 119
           +  C  CG C E CPV A++
Sbjct: 185 LASCDQCGNCVEVCPVGALM 204


>gi|313887911|ref|ZP_07821590.1| electron transport complex, RnfABCDGE type, B subunit
           [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312846077|gb|EFR33459.1| electron transport complex, RnfABCDGE type, B subunit
           [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 305

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 33/91 (36%), Gaps = 11/91 (12%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
            K     P++  +       +       N    CI C +CE  CP  AI +E+       
Sbjct: 184 KKIISLRPYKSKTVVECKSLDSGKVVRNNCSIGCIGCGICEKNCPKDAIHVENNLAS--- 240

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
                   ID  KCI CG+C   CP  AI  
Sbjct: 241 --------IDYDKCINCGICVSKCPTGAIYC 263



 Score = 40.5 bits (93), Expect = 0.072,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 5/78 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCIYCGLCQEAC 113
            +E+C+AC  C  ICP + I++           +      V  +   I CI CG+C++ C
Sbjct: 168 DKEKCVACMKCINICPKKIISLRPYKSKTVVECKSLDSGKVVRNNCSIGCIGCGICEKNC 227

Query: 114 PVDAIVEGPNFEFATETR 131
           P DAI    N       +
Sbjct: 228 PKDAIHVENNLASIDYDK 245


>gi|261378107|ref|ZP_05982680.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           cinerea ATCC 14685]
 gi|269145561|gb|EEZ71979.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           cinerea ATCC 14685]
          Length = 279

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 24/66 (36%), Gaps = 10/66 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C  C   CP  AI   S             + +   +C  CGLC   CPVD
Sbjct: 73  WIDESACIGCTACIRACPTDAIMGASK----------FMHTVIADECTGCGLCIAPCPVD 122

Query: 117 AIVEGP 122
            I   P
Sbjct: 123 CIHMQP 128


>gi|255654945|ref|ZP_05400354.1| iron-dependent hydrogenase [Clostridium difficile QCD-23m63]
 gi|296449691|ref|ZP_06891461.1| periplasmic hydrogenase 1 [Clostridium difficile NAP08]
 gi|296877992|ref|ZP_06902011.1| periplasmic hydrogenase 1 [Clostridium difficile NAP07]
 gi|296261415|gb|EFH08240.1| periplasmic hydrogenase 1 [Clostridium difficile NAP08]
 gi|296431060|gb|EFH16888.1| periplasmic hydrogenase 1 [Clostridium difficile NAP07]
          Length = 498

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 7/69 (10%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIKCIYCGLC 109
               + C AC +C++ C   AI+    P             R T++  I    CI CG C
Sbjct: 138 YINHDLCKACGMCKSSCQYDAISEVVRPCKSVCPTGALDFNRNTMKAMIHEDNCINCGAC 197

Query: 110 QEACPVDAI 118
             ACP  AI
Sbjct: 198 MSACPFGAI 206


>gi|83409915|emb|CAI64336.1| heterodisulfide reductase like protein, subunit A [uncultured
            archaeon]
          Length = 1024

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%)

Query: 59   GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-DIDMIKCIYCGLCQEACPVDA 117
              E CI C  C  +CP +A  ++      +      +  +I+   C  CG C   CP  A
Sbjct: 943  DPELCIGCGRCTLVCPYKAPELKEVTVETEEIVYITKKSEINPAVCKGCGSCAAECPTGA 1002

Query: 118  I 118
            I
Sbjct: 1003 I 1003



 Score = 39.3 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 12/91 (13%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR-------TVRY 96
              F      +      ++C AC+LC + CP +     +  + +               +
Sbjct: 104 PGNFTVTVKKKATYVDYDKCTACELCVSKCPVKVPDEYNEGQNNRKAIYLAFPQAVPRVF 163

Query: 97  DIDMIKCIY-----CGLCQEACPVDAIVEGP 122
            ID   C+Y     CG CQ+AC  DAI    
Sbjct: 164 TIDAEHCLYLTKGKCGNCQKACENDAINFED 194


>gi|321314956|ref|YP_004207243.1| putative oxidoreductase [Bacillus subtilis BSn5]
 gi|320021230|gb|ADV96216.1| putative oxidoreductase [Bacillus subtilis BSn5]
          Length = 985

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 9/101 (8%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            ++         + PF+       +  + +   Y    ++CI C  C   C    +T   
Sbjct: 114 TVKEM--KINHQSIPFDHKP----YHKDESHPFYRYDPDQCILCGRCVEACQDVQVTETL 167

Query: 83  GPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPVDAIVE 120
                    R +  +   I+   C+ CG C   CP +A++E
Sbjct: 168 TIDWERKRPRVIWDNDVPINESSCVSCGHCSTVCPCNAMME 208



 Score = 40.5 bits (93), Expect = 0.079,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 21/66 (31%), Gaps = 9/66 (13%)

Query: 57  PNGEERCIAC----KLCEAICPA-----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
            N E  C  C      CE             +I    + +        Y  D  +CI CG
Sbjct: 93  YNHELYCTVCDYNNGGCEIHNTVKEMKINHQSIPFDHKPYHKDESHPFYRYDPDQCILCG 152

Query: 108 LCQEAC 113
            C EAC
Sbjct: 153 RCVEAC 158


>gi|293557151|ref|ZP_06675705.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecium E1039]
 gi|291600720|gb|EFF31018.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecium E1039]
          Length = 1230

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 20/93 (21%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTV 94
            AL       +RC  C  C  +CP  AI                 I    R  DG +   
Sbjct: 680 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMEEAPEGFIVREMRGADGVKY-- 737

Query: 95  RYDIDMIKCIYCGLCQEACP--VDAIVEGPNFE 125
           R  + +  C  CGLC EACP    A+V  P  E
Sbjct: 738 RIQVSVEDCTGCGLCVEACPAKEKALVMKPYEE 770


>gi|294616487|ref|ZP_06696268.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecium E1636]
 gi|291590635|gb|EFF22363.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecium E1636]
          Length = 1230

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 20/93 (21%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTV 94
            AL       +RC  C  C  +CP  AI                 I    R  DG +   
Sbjct: 680 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMEEAPEGFIVREMRGADGVKY-- 737

Query: 95  RYDIDMIKCIYCGLCQEACP--VDAIVEGPNFE 125
           R  + +  C  CGLC EACP    A+V  P  E
Sbjct: 738 RIQVSVEDCTGCGLCVEACPAKEKALVMKPYEE 770


>gi|289565854|ref|ZP_06446295.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecium D344SRF]
 gi|289162314|gb|EFD10173.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecium D344SRF]
          Length = 1230

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 20/93 (21%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTV 94
            AL       +RC  C  C  +CP  AI                 I    R  DG +   
Sbjct: 680 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMEEAPEGFIVREMRGADGVKY-- 737

Query: 95  RYDIDMIKCIYCGLCQEACP--VDAIVEGPNFE 125
           R  + +  C  CGLC EACP    A+V  P  E
Sbjct: 738 RIQVSVEDCTGCGLCVEACPAKEKALVMKPYEE 770


>gi|282853212|ref|ZP_06262549.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes J139]
 gi|282582665|gb|EFB88045.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes J139]
          Length = 595

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 23/62 (37%), Gaps = 9/62 (14%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C  C  C   CP  AI             +  RY+ +  KC  C  C + CPV AI   
Sbjct: 504 NCFECDGCYGSCPEDAI---------IKLGKGHRYEFNYDKCTGCATCFDQCPVHAIEMI 554

Query: 122 PN 123
           P 
Sbjct: 555 PE 556


>gi|257884388|ref|ZP_05664041.1| pyruvate decarboxylase [Enterococcus faecium 1,231,501]
 gi|257820226|gb|EEV47374.1| pyruvate decarboxylase [Enterococcus faecium 1,231,501]
          Length = 1227

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 20/93 (21%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTV 94
            AL       +RC  C  C  +CP  AI                 I    R  DG +   
Sbjct: 677 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMEEAPEGFIVREMRGADGVKY-- 734

Query: 95  RYDIDMIKCIYCGLCQEACP--VDAIVEGPNFE 125
           R  + +  C  CGLC EACP    A+V  P  E
Sbjct: 735 RIQVSVEDCTGCGLCVEACPAKEKALVMKPYEE 767


>gi|257878479|ref|ZP_05658132.1| pyruvate decarboxylase [Enterococcus faecium 1,230,933]
 gi|257882901|ref|ZP_05662554.1| pyruvate decarboxylase [Enterococcus faecium 1,231,502]
 gi|257889321|ref|ZP_05668974.1| pyruvate decarboxylase [Enterococcus faecium 1,231,410]
 gi|257894334|ref|ZP_05673987.1| pyruvate decarboxylase [Enterococcus faecium 1,231,408]
 gi|260560068|ref|ZP_05832246.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecium C68]
 gi|257812707|gb|EEV41465.1| pyruvate decarboxylase [Enterococcus faecium 1,230,933]
 gi|257818559|gb|EEV45887.1| pyruvate decarboxylase [Enterococcus faecium 1,231,502]
 gi|257825681|gb|EEV52307.1| pyruvate decarboxylase [Enterococcus faecium 1,231,410]
 gi|257830713|gb|EEV57320.1| pyruvate decarboxylase [Enterococcus faecium 1,231,408]
 gi|260073903|gb|EEW62227.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecium C68]
          Length = 1227

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 20/93 (21%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTV 94
            AL       +RC  C  C  +CP  AI                 I    R  DG +   
Sbjct: 677 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMEEAPEGFIVREMRGADGVKY-- 734

Query: 95  RYDIDMIKCIYCGLCQEACP--VDAIVEGPNFE 125
           R  + +  C  CGLC EACP    A+V  P  E
Sbjct: 735 RIQVSVEDCTGCGLCVEACPAKEKALVMKPYEE 767


>gi|288940083|ref|YP_003442323.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Allochromatium vinosum DSM 180]
 gi|288895455|gb|ADC61291.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Allochromatium vinosum DSM 180]
          Length = 139

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/102 (27%), Positives = 36/102 (35%), Gaps = 14/102 (13%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80
            L  R       T  YP E+ +   R RG    R        C  C +C   CP QAI  
Sbjct: 12  SLVTRSALAKPATRLYPAERRTPYARTRGHIEFRID-----TCNFCTICAHKCPTQAI-- 64

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                    ++    + ID  +CI C +C E C    I   P
Sbjct: 65  -------QVSKLDKTWAIDHSRCILCSICVEDCREGCITLSP 99


>gi|240168690|ref|ZP_04747349.1| putative glutamate synthase (NADPH) small subunit [Mycobacterium
           kansasii ATCC 12478]
          Length = 551

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 29/87 (33%), Gaps = 3/87 (3%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P ++ +      G  + R       RC++C  C        +             R  RY
Sbjct: 466 PRQRVTGFDEVVGGLSDRAATFEAGRCLSCGNC--FECDGCLGSCPEDAV-IKLGRGHRY 522

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPN 123
             D  +C  C  C E CPV AI   P 
Sbjct: 523 RFDYDRCTGCATCYEQCPVHAIEMIPE 549


>gi|238619159|ref|YP_002913984.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Sulfolobus islandicus M.16.4]
 gi|238380228|gb|ACR41316.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Sulfolobus islandicus M.16.4]
          Length = 612

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 23/71 (32%), Gaps = 10/71 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L +     E+C  C +C       AI      +            ID   CI CG C   
Sbjct: 541 LPKAIVDLEKCTGCSICYDYFTCPAIIPRKDKKAE----------IDNYTCIGCGACIPV 590

Query: 113 CPVDAIVEGPN 123
           CP  AI    N
Sbjct: 591 CPFKAISLKGN 601


>gi|227827015|ref|YP_002828794.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Sulfolobus islandicus M.14.25]
 gi|227458810|gb|ACP37496.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Sulfolobus islandicus M.14.25]
          Length = 612

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 23/71 (32%), Gaps = 10/71 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L +     E+C  C +C       AI      +            ID   CI CG C   
Sbjct: 541 LPKAIVDLEKCTGCSICYDYFTCPAIIPRKDKKAE----------IDNYTCIGCGACIPV 590

Query: 113 CPVDAIVEGPN 123
           CP  AI    N
Sbjct: 591 CPFKAISLKGN 601


>gi|227829891|ref|YP_002831670.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Sulfolobus islandicus L.S.2.15]
 gi|227456338|gb|ACP35025.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Sulfolobus islandicus L.S.2.15]
          Length = 612

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 23/71 (32%), Gaps = 10/71 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L +     E+C  C +C       AI      +            ID   CI CG C   
Sbjct: 541 LPKAIVDLEKCTGCSICYDYFTCPAIIPRKDKKAE----------IDNYTCIGCGACIPV 590

Query: 113 CPVDAIVEGPN 123
           CP  AI    N
Sbjct: 591 CPFKAISLKGN 601


>gi|218883674|ref|YP_002428056.1| Indolepyruvate oxidoreductase subunit iorA [Desulfurococcus
           kamchatkensis 1221n]
 gi|218765290|gb|ACL10689.1| Indolepyruvate oxidoreductase subunit iorA [Desulfurococcus
           kamchatkensis 1221n]
          Length = 637

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 13/82 (15%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R +  L  Y   E++CI C  C  +    AI + +G +            I    C  CG
Sbjct: 562 RKQVVLPIYTIVEDKCIGCMACVNLTACPAIIVPAGSKKPI---------ILEELCNGCG 612

Query: 108 LCQEACPVDAI----VEGPNFE 125
           LC   CP  AI       P +E
Sbjct: 613 LCASICPYKAITVKNTPSPEWE 634


>gi|193211705|ref|YP_001997658.1| putative glutamate synthase (NADPH) small subunit [Chlorobaculum
           parvum NCIB 8327]
 gi|193085182|gb|ACF10458.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Chlorobaculum parvum NCIB 8327]
          Length = 578

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 29/96 (30%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
           +  +AK T   P E                  +  ERC++C  C       +   +    
Sbjct: 478 HTPQAKRTTIEPEEVVGNHDELLEALTHEEAKSESERCMSCGFCFDCKQCVSFCPQEAIT 537

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
                    +   +  KC+ C LC   CP   I  G
Sbjct: 538 RFRDNPAGEKVYTNYAKCVGCHLCSLVCPCGYIQMG 573


>gi|69245966|ref|ZP_00603738.1| Pyruvate decarboxylase:4Fe-4S ferredoxin, iron-sulfur
           binding:Pyruvate ferredoxin/flavodoxin
           oxidoreductase:Pyruvate flavodoxin/ferredoxin
           oxidoreductase, N-terminal [Enterococcus faecium DO]
 gi|258615996|ref|ZP_05713766.1| pyruvate ferredoxin/flavodoxin oxidoreductase family protein
           [Enterococcus faecium DO]
 gi|293559805|ref|ZP_06676323.1| pyruvate:ferredoxin [Enterococcus faecium E1162]
 gi|294623416|ref|ZP_06702272.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecium U0317]
 gi|314939691|ref|ZP_07846915.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecium TX0133a04]
 gi|314942220|ref|ZP_07849072.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecium TX0133C]
 gi|314948853|ref|ZP_07852223.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecium TX0082]
 gi|314950795|ref|ZP_07853867.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecium TX0133A]
 gi|314992225|ref|ZP_07857665.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecium TX0133B]
 gi|314995217|ref|ZP_07860330.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecium TX0133a01]
 gi|68195496|gb|EAN09940.1| Pyruvate decarboxylase:4Fe-4S ferredoxin, iron-sulfur
           binding:Pyruvate ferredoxin/flavodoxin
           oxidoreductase:Pyruvate flavodoxin/ferredoxin
           oxidoreductase, N-terminal [Enterococcus faecium DO]
 gi|291597182|gb|EFF28377.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecium U0317]
 gi|291606224|gb|EFF35640.1| pyruvate:ferredoxin [Enterococcus faecium E1162]
 gi|313590547|gb|EFR69392.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecium TX0133a01]
 gi|313593225|gb|EFR72070.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecium TX0133B]
 gi|313597010|gb|EFR75855.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecium TX0133A]
 gi|313598992|gb|EFR77837.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecium TX0133C]
 gi|313641026|gb|EFS05606.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecium TX0133a04]
 gi|313644726|gb|EFS09306.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecium TX0082]
          Length = 1230

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 20/93 (21%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTV 94
            AL       +RC  C  C  +CP  AI                 I    R  DG +   
Sbjct: 680 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMEEAPEGFIVREMRGADGVKY-- 737

Query: 95  RYDIDMIKCIYCGLCQEACP--VDAIVEGPNFE 125
           R  + +  C  CGLC EACP    A+V  P  E
Sbjct: 738 RIQVSVEDCTGCGLCVEACPAKEKALVMKPYEE 770


>gi|319790462|ref|YP_004152095.1| NADH dehydrogenase subunit I [Thermovibrio ammonificans HB-1]
 gi|317114964|gb|ADU97454.1| NADH dehydrogenase subunit I [Thermovibrio ammonificans HB-1]
          Length = 192

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 12/108 (11%)

Query: 25  RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84
           +  F  K T  +  +       +RG+H +R      E CI C LC   CP   I +    
Sbjct: 22  KAVFAPKATEIWWDKGVRRELHYRGKHIIR-----AELCIGCSLCSRACPVNCIDMVPTG 76

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPV---DAIVEGPNFEFATE 129
                 +      +   +C++CGLC++ACP     AI     +    E
Sbjct: 77  VK----KPRAVPRVRANECMFCGLCEDACPTKPEKAIKLTDEYRMFVE 120


>gi|315126996|ref|YP_004068999.1| electron transport complex protein RnfC [Pseudoalteromonas sp.
           SM9913]
 gi|315015510|gb|ADT68848.1| electron transport complex protein RnfC [Pseudoalteromonas sp.
           SM9913]
          Length = 679

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 2/92 (2%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C  C   CPA  +  +               + ++  CI CG C   CP   I    
Sbjct: 377 CIRCSACADACPAS-LLPQQLQWFAKSKEYDKLQEHNLFDCIECGACAYVCP-SEIPLVQ 434

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVR 154
            +  A    +E   +K +     +R+++   R
Sbjct: 435 YYRVAKVEIKEQIAEKIKSDRAKERFDARKAR 466


>gi|317060630|ref|ZP_07925115.1| hydrogenase [Fusobacterium sp. D12]
 gi|313686306|gb|EFS23141.1| hydrogenase [Fusobacterium sp. D12]
          Length = 599

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 31/85 (36%), Gaps = 10/85 (11%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
            E         G+          E+CI C  C  +CP + I      R            
Sbjct: 147 EEHVEDLKCPAGQCIHLLKFKITEKCIGCTACARVCPVKCIAGAPKKRHF---------- 196

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           +D  +C +CG C  ACPV AI EG 
Sbjct: 197 LDTSRCTHCGQCVSACPVGAIFEGD 221


>gi|207721377|ref|YP_002251818.1| ferredoxin protein [Ralstonia solanacearum MolK2]
 gi|206586536|emb|CAQ17123.1| ferredoxin protein [Ralstonia solanacearum MolK2]
          Length = 708

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 9/74 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              RC  C  C + CP+QA+  ++               +    C+ CGLC+  CP DAI
Sbjct: 576 DRARCTLCMACVSACPSQALRDQAE---------QPVLSMIERNCVQCGLCETTCPEDAI 626

Query: 119 VEGPNFEFATETRQ 132
              P    +   RQ
Sbjct: 627 ALVPRLNLSAGARQ 640



 Score = 40.9 bits (94), Expect = 0.059,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 7/55 (12%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C+ C  +C A AIT +                +    C+ CG C  ACP  A+
Sbjct: 323 VGCEACVRVCSAVAITSQWKDGRGSVH-------VTPNLCVGCGACTTACPTGAL 370



 Score = 38.5 bits (88), Expect = 0.30,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 20/48 (41%)

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               A  +T   G       +   R  ID+ +C  C  C +ACP DAI
Sbjct: 168 WPVHAGELTQVGGWLGAFDVQWRSRNPIDLDRCTRCNACIDACPEDAI 215



 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 1/66 (1%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-IDMI 101
            S   R +         E  C+ C LCE  CP  AI +        G R+ V  +  +  
Sbjct: 591 PSQALRDQAEQPVLSMIERNCVQCGLCETTCPEDAIALVPRLNLSAGARQPVTLNATEPF 650

Query: 102 KCIYCG 107
            CI CG
Sbjct: 651 HCIRCG 656



 Score = 35.5 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 32/118 (27%), Gaps = 21/118 (17%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYP-----NGEERCIACKLCEAICPAQAITIESGP 84
                 +P   G  +       A             +RC  C  C   CP  AI      
Sbjct: 162 PPMARRWPVHAGELTQVGGWLGAFDVQWRSRNPIDLDRCTRCNACIDACPEDAID----- 216

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEAC-PVDAIVEGPNFEFATET-RQELYYDKER 140
                      Y ID+  C     C +AC    AI  G      T   R +L +D   
Sbjct: 217 ---------TLYQIDLDACRDHRDCVKACGEAMAIDFGRLDAPQTYAGRFDLIFDLND 265


>gi|153807872|ref|ZP_01960540.1| hypothetical protein BACCAC_02158 [Bacteroides caccae ATCC 43185]
 gi|149129481|gb|EDM20695.1| hypothetical protein BACCAC_02158 [Bacteroides caccae ATCC 43185]
          Length = 459

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 39/89 (43%), Gaps = 5/89 (5%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVR 95
           PF  G  SPR R   A        ++CI C+ CE++C   Q +   S  R    T     
Sbjct: 2   PFNGGELSPRKREITA--SIVRNMDKCIFCRRCESVCNDVQTVGALSAIRRGFNTTIAPA 59

Query: 96  YDIDM--IKCIYCGLCQEACPVDAIVEGP 122
           +D  M   +C YCG C   CPV A+ E  
Sbjct: 60  FDRMMTESECTYCGQCVAVCPVGALTERD 88


>gi|295115197|emb|CBL36044.1| Uncharacterized Fe-S center protein [butyrate-producing bacterium
           SM4/1]
          Length = 368

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 11/64 (17%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           +++CI C  CE  C   AI+                  ID  KC+ CG C   CPVDA+ 
Sbjct: 194 QDQCIGCHACERDCAHGAISFPEKKAF-----------IDESKCVGCGRCIGVCPVDAVA 242

Query: 120 EGPN 123
              +
Sbjct: 243 NHCD 246


>gi|283797800|ref|ZP_06346953.1| iron-sulfur cluster-binding protein [Clostridium sp. M62/1]
 gi|291074483|gb|EFE11847.1| iron-sulfur cluster-binding protein [Clostridium sp. M62/1]
          Length = 368

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 11/64 (17%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           +++CI C  CE  C   AI+                  ID  KC+ CG C   CPVDA+ 
Sbjct: 194 QDQCIGCHACERDCAHGAISFPEKKAF-----------IDESKCVGCGRCIGVCPVDAVA 242

Query: 120 EGPN 123
              +
Sbjct: 243 NHCD 246


>gi|154418685|ref|XP_001582360.1| pyruvate:ferredoxin oxidoreductase A [Trichomonas vaginalis G3]
 gi|622958|gb|AAA85494.1| pyruvate:ferredoxin oxidoreductase proprotein [Trichomonas
           vaginalis]
 gi|121916595|gb|EAY21374.1| pyruvate:ferredoxin oxidoreductase A [Trichomonas vaginalis G3]
          Length = 1157

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 33/107 (30%), Gaps = 14/107 (13%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRC 86
               T+   +   A+      E++CI C  C  +CP   I                  + 
Sbjct: 658 VPNDTAKYEKRGIAVTVPKWEEKKCIQCNTCAMVCPHAVIRPFLLTQEEAKGLTTLKAKG 717

Query: 87  HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
            +      R  I  + C  C  C  +CP  A+     +  A    +E
Sbjct: 718 KEIKNYQFRIQITPLDCTGCATCVTSCPTKALSMT--YRNAKLDEEE 762


>gi|50841651|ref|YP_054878.1| putative glutamate synthase (NADPH) small subunit
           [Propionibacterium acnes KPA171202]
 gi|289424167|ref|ZP_06425950.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes SK187]
 gi|295129728|ref|YP_003580391.1| Pyridine nucleotide-disulfide oxidoreductase family protein
           associated with PFOR [Propionibacterium acnes SK137]
 gi|50839253|gb|AAT81920.1| dehydrogenase, GltD family [Propionibacterium acnes KPA171202]
 gi|289154864|gb|EFD03546.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes SK187]
 gi|291375698|gb|ADD99552.1| Pyridine nucleotide-disulfide oxidoreductase family protein
           associated with PFOR [Propionibacterium acnes SK137]
 gi|332674564|gb|AEE71380.1| protein YgfK [Propionibacterium acnes 266]
          Length = 595

 Score = 51.3 bits (121), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 23/62 (37%), Gaps = 9/62 (14%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C  C  C   CP  AI             +  RY+ +  KC  C  C + CPV AI   
Sbjct: 504 NCFECDGCYGSCPEDAI---------IKLGKGHRYEFNYDKCTGCATCFDQCPVHAIEMI 554

Query: 122 PN 123
           P 
Sbjct: 555 PE 556


>gi|314922500|gb|EFS86331.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL001PA1]
 gi|314965577|gb|EFT09676.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL082PA2]
 gi|314982739|gb|EFT26831.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL110PA3]
 gi|315091393|gb|EFT63369.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL110PA4]
 gi|315094328|gb|EFT66304.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL060PA1]
 gi|315105052|gb|EFT77028.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL050PA2]
 gi|327329120|gb|EGE70880.1| pyridine nucleotide-disulfide oxidoreductase family protein
           [Propionibacterium acnes HL103PA1]
          Length = 605

 Score = 50.9 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 23/62 (37%), Gaps = 9/62 (14%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C  C  C   CP  AI             +  RY+ +  KC  C  C + CPV AI   
Sbjct: 514 NCFECDGCYGSCPEDAI---------IKLGKGHRYEFNYDKCTGCATCFDQCPVHAIEMI 564

Query: 122 PN 123
           P 
Sbjct: 565 PE 566


>gi|313772692|gb|EFS38658.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL074PA1]
 gi|313811173|gb|EFS48887.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL083PA1]
 gi|313832174|gb|EFS69888.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL007PA1]
 gi|313834333|gb|EFS72047.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL056PA1]
 gi|314974430|gb|EFT18525.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL053PA1]
 gi|314977381|gb|EFT21476.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL045PA1]
 gi|314985426|gb|EFT29518.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL005PA1]
 gi|315097261|gb|EFT69237.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL038PA1]
 gi|327331224|gb|EGE72963.1| pyridine nucleotide-disulfide oxidoreductase family protein
           [Propionibacterium acnes HL096PA2]
 gi|327447403|gb|EGE94057.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL043PA1]
 gi|327450412|gb|EGE97066.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL043PA2]
 gi|328759538|gb|EGF73144.1| pyridine nucleotide-disulfide oxidoreductase family protein
           [Propionibacterium acnes HL099PA1]
          Length = 605

 Score = 50.9 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 23/62 (37%), Gaps = 9/62 (14%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C  C  C   CP  AI             +  RY+ +  KC  C  C + CPV AI   
Sbjct: 514 NCFECDGCYGSCPEDAI---------IKLGKGHRYEFNYDKCTGCATCFDQCPVHAIEMI 564

Query: 122 PN 123
           P 
Sbjct: 565 PE 566


>gi|299143936|ref|ZP_07037016.1| Fe-hydrogenase large subunit family protein [Peptoniphilus sp. oral
           taxon 386 str. F0131]
 gi|298518421|gb|EFI42160.1| Fe-hydrogenase large subunit family protein [Peptoniphilus sp. oral
           taxon 386 str. F0131]
          Length = 498

 Score = 50.9 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQ 110
                +CI C  C+  CP  AI +   P          G+    R +ID  +C+ CG C 
Sbjct: 144 HIDTTKCIKCGRCKETCPYNAIVMYDRPCAAACGVNAIGSDEYGRAEIDHDECVACGRCI 203

Query: 111 EACPVDAI 118
            +CP  AI
Sbjct: 204 ASCPFGAI 211



 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 13/68 (19%)

Query: 57  PNGEERCIACK--LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
               + C  C    C  +CP  A+TIE                ID  KCI CG C+E CP
Sbjct: 113 YYVTDNCRKCMAHPCTNVCPVNAVTIERNRAH-----------IDTTKCIKCGRCKETCP 161

Query: 115 VDAIVEGP 122
            +AIV   
Sbjct: 162 YNAIVMYD 169


>gi|289427411|ref|ZP_06429124.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes J165]
 gi|289159341|gb|EFD07532.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes J165]
          Length = 595

 Score = 50.9 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 23/62 (37%), Gaps = 9/62 (14%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C  C  C   CP  AI             +  RY+ +  KC  C  C + CPV AI   
Sbjct: 504 NCFECDGCYGSCPEDAI---------IKLGKGHRYEFNYDKCTGCATCFDQCPVHAIEMI 554

Query: 122 PN 123
           P 
Sbjct: 555 PE 556


>gi|302527244|ref|ZP_07279586.1| ferredoxin-NADP+ reductase [Streptomyces sp. AA4]
 gi|302436139|gb|EFL07955.1| ferredoxin-NADP+ reductase [Streptomyces sp. AA4]
          Length = 500

 Score = 50.9 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           + C     C ++CP   I          GT   +  D     CI CG C +ACPVDAI 
Sbjct: 7   QTCCNDATCVSVCPVNCIHPTPDE-PDFGTTEMLYVD--PASCIDCGACADACPVDAIF 62


>gi|242398619|ref|YP_002994043.1| Pyruvate-formate lyase-activating enzyme [Thermococcus sibiricus MM
           739]
 gi|242265012|gb|ACS89694.1| Pyruvate-formate lyase-activating enzyme [Thermococcus sibiricus MM
           739]
          Length = 301

 Score = 50.9 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 10/59 (16%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           +CI C  C  +CP  AI+ +                ID  KC  CG+C  ACP  A+  
Sbjct: 54  KCIHCHTCVKVCPENAISFDENE----------TQQIDREKCTGCGVCASACPTSALRL 102



 Score = 37.8 bits (86), Expect = 0.55,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 18/57 (31%), Gaps = 1/57 (1%)

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
                       +G            KCI+C  C + CP +AI    N E     R+
Sbjct: 28  GCPLSCWWCHNPEGVSPKPELMYFEFKCIHCHTCVKVCPENAISFDEN-ETQQIDRE 83


>gi|170755508|ref|YP_001782909.1| electron transfer flavoprotein, alpha subunit/FixB family protein
           [Clostridium botulinum B1 str. Okra]
 gi|169120720|gb|ACA44556.1| electron transfer flavoprotein, alpha subunit/FixB family protein
           [Clostridium botulinum B1 str. Okra]
 gi|322807596|emb|CBZ05171.1| electron transfer flavoprotein, alpha subunit [Clostridium
           botulinum H04402 065]
          Length = 398

 Score = 50.9 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 12/58 (20%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           E+C AC +CE  CP  AI + +G    +             KC  CG C EACP DAI
Sbjct: 8   EKCKACGICEKQCPFDAIHVVNGLAEVN------------EKCTICGACVEACPFDAI 53



 Score = 37.0 bits (84), Expect = 0.88,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 98  IDMIKCIYCGLCQEACPVDAIV 119
           I   KC  CG+C++ CP DAI 
Sbjct: 5   IIKEKCKACGICEKQCPFDAIH 26


>gi|167748877|ref|ZP_02421004.1| hypothetical protein ANACAC_03651 [Anaerostipes caccae DSM 14662]
 gi|317470283|ref|ZP_07929677.1| 4Fe-4S binding domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
 gi|167651847|gb|EDR95976.1| hypothetical protein ANACAC_03651 [Anaerostipes caccae DSM 14662]
 gi|316902256|gb|EFV24176.1| 4Fe-4S binding domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
          Length = 495

 Score = 50.9 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 6/70 (8%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDG------TRRTVRYDIDMIKCIYCGL 108
                +E+CI C  C+ +CP  AI     P           T    R  I+  KC+ CG+
Sbjct: 142 YSYIDQEKCIKCGQCQKVCPYSAIHERKRPCEVACGVGAIETDYAGRATINPDKCVSCGM 201

Query: 109 CQEACPVDAI 118
           C   CP  AI
Sbjct: 202 CMVNCPFGAI 211



 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-----DIDMIKCIYCGLCQEACPVDA 117
           C ACK    I   +     + P      +  + +      ID  KCI CG CQ+ CP  A
Sbjct: 105 CNACKDRAFIVGGECQGCMAHPCMEVCPKNAISFVDGYSYIDQEKCIKCGQCQKVCPYSA 164

Query: 118 IVEGP 122
           I E  
Sbjct: 165 IHERK 169


>gi|160933096|ref|ZP_02080485.1| hypothetical protein CLOLEP_01939 [Clostridium leptum DSM 753]
 gi|156868170|gb|EDO61542.1| hypothetical protein CLOLEP_01939 [Clostridium leptum DSM 753]
          Length = 546

 Score = 50.9 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 25/71 (35%), Gaps = 6/71 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110
                +C  C  C A CP  AI+    P         +  D      I   +CI CG C 
Sbjct: 191 YIDPAKCKECGRCAAACPYNAISDTMRPCLRSCPVDAITMDENKQASIKYERCIGCGACT 250

Query: 111 EACPVDAIVEG 121
             CP  AI + 
Sbjct: 251 MDCPFGAISDT 261


>gi|186476850|ref|YP_001858320.1| ferredoxin [Burkholderia phymatum STM815]
 gi|184193309|gb|ACC71274.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           phymatum STM815]
          Length = 291

 Score = 50.9 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 24/99 (24%), Gaps = 18/99 (18%)

Query: 24  LRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG 83
           L            P                      E  CI C LC   CP  AI     
Sbjct: 56  LAKLLGKPVIPLNPENGVERPRP--------VAFIDENLCIGCTLCMQACPVDAIVGAPK 107

Query: 84  PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                       + I    C  C LC   CPVD I   P
Sbjct: 108 Q----------MHTIVAELCTGCDLCVPPCPVDCIAMIP 136


>gi|320353468|ref|YP_004194807.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
            [Desulfobulbus propionicus DSM 2032]
 gi|320121970|gb|ADW17516.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
            [Desulfobulbus propionicus DSM 2032]
          Length = 1126

 Score = 50.9 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 6/59 (10%)

Query: 59   GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
             ++ C  C  C  +C   A+T+++               ID   C  CG C   CP  A
Sbjct: 1048 DDQLCRGCGRCANVCLYHAVTLQANTVGGW------HAHIDEALCKGCGNCLSVCPTGA 1100



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query: 98  IDMIKCIYCGLCQEACPVD 116
           ID  +C  CG C  ACPV+
Sbjct: 106 IDTDRCTLCGKCVAACPVN 124


>gi|291537778|emb|CBL10889.1| 2-oxoacid:acceptor oxidoreductase, gamma subunit,
           pyruvate/2-ketoisovalerate family [Roseburia
           intestinalis XB6B4]
          Length = 373

 Score = 50.9 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 5/96 (5%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           ++RCI C LC++ CP   +  +  P  + G    V   +D   C  C  C + CP  A+V
Sbjct: 265 QDRCINCGLCDSACPD--MVFQFAPGTYKGKEAMVNQGLDYRHCKGCLRCVDVCPTHALV 322

Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRN 155
           +    ++  +         + LL +  R++     +
Sbjct: 323 KAEEKDYPDKPHS---MPDQDLLPDSVRYQKTGANS 355


>gi|293401255|ref|ZP_06645399.1| putative [Fe] hydrogenase, large subunit HymC [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291305381|gb|EFE46626.1| putative [Fe] hydrogenase, large subunit HymC [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 553

 Score = 50.9 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 38/114 (33%), Gaps = 21/114 (18%)

Query: 12  FLKEFVGAFFLCLRYFFK-AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70
            + E      +   +  K     +  P E    +P  R   +L         CI C  C+
Sbjct: 1   MILELRIILKIGGSFMSKHENVDVRVPVE--DNNPAIRRIESL---------CIRCGQCK 49

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
            +C               G    +    D   CI+CG C   CP +A+VE  ++
Sbjct: 50  EVC---------KKEISVGHHYDLLKTKDTAICIHCGQCVNVCPTNALVERHDW 94


>gi|255028983|ref|ZP_05300934.1| hypothetical protein LmonL_07101 [Listeria monocytogenes LO28]
          Length = 608

 Score = 50.9 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 3/85 (3%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E+      +  + +   Y    ++CI C  C   C    +             R +  D 
Sbjct: 124 ERPYREKGYLNDFSHPFYRYDPDQCILCGRCVEACQQVQVNETLSIDWERSQPRVIWDDD 183

Query: 99  DMIK---CIYCGLCQEACPVDAIVE 120
                  C+ CGLC   CP +A++E
Sbjct: 184 RPANLSSCVSCGLCATVCPCNALME 208



 Score = 38.9 bits (89), Expect = 0.24,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 9/69 (13%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCI 104
           R   N    C  C      C+     + + +E   R +             Y  D  +CI
Sbjct: 90  RILENHLLYCTVCDNNNGNCKVHNTTELLGVEKQERPYREKGYLNDFSHPFYRYDPDQCI 149

Query: 105 YCGLCQEAC 113
            CG C EAC
Sbjct: 150 LCGRCVEAC 158


>gi|229584184|ref|YP_002842685.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Sulfolobus islandicus M.16.27]
 gi|228019233|gb|ACP54640.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Sulfolobus islandicus M.16.27]
          Length = 612

 Score = 50.9 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 23/71 (32%), Gaps = 10/71 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L +     E+C  C +C       AI      +            ID   CI CG C   
Sbjct: 541 LPKAIVDLEKCTGCSICYDYFTCPAIIPRKDKKAE----------IDNYTCIGCGACIPV 590

Query: 113 CPVDAIVEGPN 123
           CP  AI    N
Sbjct: 591 CPFKAISLKGN 601


>gi|168183587|ref|ZP_02618251.1| electron transfer flavoprotein, alpha subunit/FixB family
           [Clostridium botulinum Bf]
 gi|237796726|ref|YP_002864278.1| electron transfer flavoprotein subunit alpha/FixB family protein
           [Clostridium botulinum Ba4 str. 657]
 gi|182673296|gb|EDT85257.1| electron transfer flavoprotein, alpha subunit/FixB family
           [Clostridium botulinum Bf]
 gi|229261514|gb|ACQ52547.1| electron transfer flavoprotein, alpha subunit/FixB family protein
           [Clostridium botulinum Ba4 str. 657]
          Length = 398

 Score = 50.9 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 12/58 (20%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           E+C AC +CE  CP  AI + +G    +             KC  CG C EACP DAI
Sbjct: 8   EKCKACGICEKQCPFDAIHVVNGLAEVN------------EKCTICGACVEACPFDAI 53



 Score = 37.0 bits (84), Expect = 0.88,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 98  IDMIKCIYCGLCQEACPVDAIV 119
           I   KC  CG+C++ CP DAI 
Sbjct: 5   IIKEKCKACGICEKQCPFDAIH 26


>gi|167392731|ref|XP_001740273.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165895662|gb|EDR23298.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
          Length = 504

 Score = 50.9 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 25/66 (37%), Gaps = 6/66 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV------RYDIDMIKCIYCGLCQEA 112
            +  CI C  C   CP  AI  +S P         +         ID  KCI CG C  A
Sbjct: 147 NQNDCIKCGRCFKFCPYGAIIHKSIPCVKACPCGAMLDSPEGVKTIDFEKCINCGGCMRA 206

Query: 113 CPVDAI 118
           CP   I
Sbjct: 207 CPFGTI 212



 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 6/67 (8%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEAC 113
           ++ C  C               S P   +  ++ + +       I+   CI CG C + C
Sbjct: 102 QKGCNKCHFNGYFVTQSCEGCTSRPCSVNCPKKCISFGEDGRALINQNDCIKCGRCFKFC 161

Query: 114 PVDAIVE 120
           P  AI+ 
Sbjct: 162 PYGAIIH 168


>gi|153938285|ref|YP_001392631.1| electron transfer flavoprotein, alpha subunit/FixB family protein
           [Clostridium botulinum F str. Langeland]
 gi|152934181|gb|ABS39679.1| electron transfer flavoprotein, alpha subunit/FixB family protein
           [Clostridium botulinum F str. Langeland]
 gi|295320617|gb|ADG00995.1| electron transfer flavoprotein, alpha subunit/FixB family protein
           [Clostridium botulinum F str. 230613]
          Length = 398

 Score = 50.9 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 12/58 (20%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           E+C AC +CE  CP  AI + +G    +             KC  CG C EACP DAI
Sbjct: 8   EKCKACGICEKQCPFDAIHVVNGLAEVN------------EKCTICGACVEACPFDAI 53



 Score = 37.0 bits (84), Expect = 0.88,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 98  IDMIKCIYCGLCQEACPVDAIV 119
           I   KC  CG+C++ CP DAI 
Sbjct: 5   IIKEKCKACGICEKQCPFDAIH 26


>gi|158522840|ref|YP_001530710.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfococcus oleovorans Hxd3]
 gi|158511666|gb|ABW68633.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus
           oleovorans Hxd3]
          Length = 427

 Score = 50.9 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/101 (27%), Positives = 38/101 (37%), Gaps = 8/101 (7%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T ++P   G  +     + A + +   E  CI C  C  ICPA+            G  
Sbjct: 319 YTESHP--VGPDTDMIFVQGADQIFDVSENSCINCGDCVRICPARVPVNVLIRYLQAGEY 376

Query: 92  RTVRYDIDMIKCIYCGLCQEACP-----VDAIVEGPNFEFA 127
                  D++ CI CGLC   CP        I  G  +EFA
Sbjct: 377 GEAVDSHDLLSCIDCGLCSCVCPARIPIFQYIQLGK-YEFA 416


>gi|91780908|ref|YP_556115.1| benzoyl-CoA oxygenase, component A [Burkholderia xenovorans LB400]
 gi|91693568|gb|ABE36765.1| benzoyl-CoA oxygenase, component A [Burkholderia xenovorans LB400]
          Length = 414

 Score = 50.9 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 11/68 (16%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             LR++    E CI C  CE  CP  AIT +              Y +    C  C  C 
Sbjct: 8   EVLRQHLIDPEICIRCNTCEETCPIDAITHDDN-----------NYVVKADVCNGCMACV 56

Query: 111 EACPVDAI 118
             CP  AI
Sbjct: 57  SPCPTGAI 64



 Score = 37.0 bits (84), Expect = 0.86,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 17/40 (42%)

Query: 84  PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                      ++ ID   CI C  C+E CP+DAI    N
Sbjct: 1   MNAPVPIEVLRQHLIDPEICIRCNTCEETCPIDAITHDDN 40


>gi|319938422|ref|ZP_08012816.1| Fe-hydrogenase large subunit family protein [Coprobacillus sp.
           29_1]
 gi|319806338|gb|EFW03005.1| Fe-hydrogenase large subunit family protein [Coprobacillus sp.
           29_1]
          Length = 502

 Score = 50.9 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 6/66 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQEA 112
            +E+CI C LC   CP  AI     P                  DID  KC+ CG+C   
Sbjct: 145 DQEKCIKCGLCIKNCPYGAIMKMERPCAKACGMDAIQTDEHGHADIDYDKCVSCGMCLVN 204

Query: 113 CPVDAI 118
           CP  AI
Sbjct: 205 CPFGAI 210



 Score = 40.9 bits (94), Expect = 0.056,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 13/59 (22%)

Query: 63  CIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           C  C    C+ +CP  AI I +G           R  ID  KCI CGLC + CP  AI+
Sbjct: 118 CQGCLAHPCKEVCPKGAIDIING-----------RSIIDQEKCIKCGLCIKNCPYGAIM 165


>gi|284997007|ref|YP_003418774.1| thiamine pyrophosphate enzyme domain protein TPP-binding protein
           [Sulfolobus islandicus L.D.8.5]
 gi|284444902|gb|ADB86404.1| thiamine pyrophosphate enzyme domain protein TPP-binding protein
           [Sulfolobus islandicus L.D.8.5]
          Length = 612

 Score = 50.9 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 23/71 (32%), Gaps = 10/71 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L +     E+C  C +C       AI      +            ID   CI CG C   
Sbjct: 541 LPKAIVDLEKCTGCSICYDYFTCPAIIPRKDKKAE----------IDNYTCIGCGACIPV 590

Query: 113 CPVDAIVEGPN 123
           CP  AI    N
Sbjct: 591 CPFKAISLKGN 601


>gi|257866189|ref|ZP_05645842.1| respiratory-chain NADH dehydrogenase 51 kDa subunit [Enterococcus
           casseliflavus EC30]
 gi|257872520|ref|ZP_05652173.1| respiratory-chain NADH dehydrogenase 51 kDa subunit [Enterococcus
           casseliflavus EC10]
 gi|257800123|gb|EEV29175.1| respiratory-chain NADH dehydrogenase 51 kDa subunit [Enterococcus
           casseliflavus EC30]
 gi|257806684|gb|EEV35506.1| respiratory-chain NADH dehydrogenase 51 kDa subunit [Enterococcus
           casseliflavus EC10]
          Length = 445

 Score = 50.9 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 36/109 (33%), Gaps = 10/109 (9%)

Query: 13  LKEFVGA-------FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
           L +F G          L      K+  T+  P  KG  S      +    +   E  CI 
Sbjct: 313 LIDFAGGFQGAPSKLILGGPMMGKSVKTLKVPVTKG--SNGIVVFNEETDWLYAENPCIR 370

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           C  C   CP + + +E       G       ++    CI CG C   CP
Sbjct: 371 CNKCVEACPMRLMPMEIDQFYRAGD-YQKCEELLAEACINCGACTFVCP 418



 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 4/41 (9%)

Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLN 143
           CI C  C EACP+  +      E     R   Y   E LL 
Sbjct: 368 CIRCNKCVEACPMRLMPM----EIDQFYRAGDYQKCEELLA 404


>gi|313764837|gb|EFS36201.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL013PA1]
 gi|313792724|gb|EFS40805.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL110PA1]
 gi|313803388|gb|EFS44570.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL110PA2]
 gi|313807034|gb|EFS45532.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL087PA2]
 gi|313814047|gb|EFS51761.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL025PA1]
 gi|313815601|gb|EFS53315.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL059PA1]
 gi|313817819|gb|EFS55533.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL046PA2]
 gi|313821355|gb|EFS59069.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL036PA1]
 gi|313824704|gb|EFS62418.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL036PA2]
 gi|313826368|gb|EFS64082.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL063PA1]
 gi|313828941|gb|EFS66655.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL063PA2]
 gi|313839448|gb|EFS77162.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL086PA1]
 gi|314916399|gb|EFS80230.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL005PA4]
 gi|314917239|gb|EFS81070.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL050PA1]
 gi|314921614|gb|EFS85445.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL050PA3]
 gi|314926390|gb|EFS90221.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL036PA3]
 gi|314930738|gb|EFS94569.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL067PA1]
 gi|314955142|gb|EFS99547.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL027PA1]
 gi|314959339|gb|EFT03441.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL002PA1]
 gi|314961511|gb|EFT05612.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL002PA2]
 gi|314964098|gb|EFT08198.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL082PA1]
 gi|314969207|gb|EFT13305.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL037PA1]
 gi|314980076|gb|EFT24170.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL072PA2]
 gi|314986930|gb|EFT31022.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL005PA2]
 gi|314990577|gb|EFT34668.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL005PA3]
 gi|315078796|gb|EFT50818.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL053PA2]
 gi|315081729|gb|EFT53705.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL078PA1]
 gi|315082955|gb|EFT54931.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL027PA2]
 gi|315086475|gb|EFT58451.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL002PA3]
 gi|315088189|gb|EFT60165.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL072PA1]
 gi|315099589|gb|EFT71565.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL059PA2]
 gi|315102180|gb|EFT74156.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL046PA1]
 gi|315107545|gb|EFT79521.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL030PA1]
 gi|315109948|gb|EFT81924.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL030PA2]
 gi|327333850|gb|EGE75567.1| pyridine nucleotide-disulfide oxidoreductase family protein
           [Propionibacterium acnes HL096PA3]
 gi|327334733|gb|EGE76444.1| pyridine nucleotide-disulfide oxidoreductase family protein
           [Propionibacterium acnes HL097PA1]
 gi|327444681|gb|EGE91335.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL013PA2]
 gi|327454431|gb|EGF01086.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL087PA3]
 gi|327456498|gb|EGF03153.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL083PA2]
 gi|327457233|gb|EGF03888.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL092PA1]
 gi|328756191|gb|EGF69807.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL087PA1]
 gi|328758186|gb|EGF71802.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL020PA1]
 gi|328758573|gb|EGF72189.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA
           [Propionibacterium acnes HL025PA2]
          Length = 605

 Score = 50.9 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 23/62 (37%), Gaps = 9/62 (14%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C  C  C   CP  AI             +  RY+ +  KC  C  C + CPV AI   
Sbjct: 514 NCFECDGCYGSCPEDAI---------IKLGKGHRYEFNYDKCTGCATCFDQCPVHAIEMI 564

Query: 122 PN 123
           P 
Sbjct: 565 PE 566


>gi|302391756|ref|YP_003827576.1| anaerobic carbon-monoxide dehydrogenase diaphorase component
           flavoprotein [Acetohalobium arabaticum DSM 5501]
 gi|302203833|gb|ADL12511.1| anaerobic carbon-monoxide dehydrogenase diaphorase component
           flavoprotein [Acetohalobium arabaticum DSM 5501]
          Length = 613

 Score = 50.9 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 36/96 (37%), Gaps = 16/96 (16%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            L+Y F+ +   +    K           +L  Y    + C  C  C   CP  AI+ E+
Sbjct: 531 TLKY-FRDEYKAHVKDNKCPAGVC----KSLVEYQI-TDDCQGCTKCVDECPGDAISGEA 584

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +          + ID   CI CG C   CP DAI
Sbjct: 585 KEQ----------HTIDEDDCIKCGSCINVCPFDAI 610


>gi|257066578|ref|YP_003152834.1| NADH dehydrogenase (quinone) [Anaerococcus prevotii DSM 20548]
 gi|256798458|gb|ACV29113.1| NADH dehydrogenase (quinone) [Anaerococcus prevotii DSM 20548]
          Length = 526

 Score = 50.9 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 10/60 (16%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E CI C  C+ +CP +AI  E+  +            I+  KCI CG C++ CP++AI  
Sbjct: 476 EDCIGCGKCKRLCPNEAIAGEARKKHE----------INQDKCIKCGQCKDNCPINAIAL 525



 Score = 37.4 bits (85), Expect = 0.75,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 9/66 (13%)

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134
            +A   E+           + Y I    CI CG C+  CP +AI        A E R++ 
Sbjct: 451 YEAHVNENKTCPSKRCISLLNYTIGED-CIGCGKCKRLCPNEAI--------AGEARKKH 501

Query: 135 YYDKER 140
             ++++
Sbjct: 502 EINQDK 507


>gi|170078052|ref|YP_001734690.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Synechococcus sp.
           PCC 7002]
 gi|169885721|gb|ACA99434.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Synechococcus sp.
           PCC 7002]
          Length = 1178

 Score = 50.9 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 30/121 (24%), Gaps = 24/121 (19%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPR 85
              TS   +   A        E CI C  C  +CP                A        
Sbjct: 667 PTGTSKWEKRNVAQFIPEWDPEVCIQCGKCVMVCPHATIRAKVYEPNLLGNAPESFKSID 726

Query: 86  CHDGTRRTVRYDID--MIKCIYCGLCQEACP--------VDAIVEGPNFEFATETRQELY 135
             D      ++ I      C  CG+C + CP          AI          + R    
Sbjct: 727 AKDKNFSGQKFTIQVAPEDCTGCGVCVDVCPAKNKAQPSKKAINMVEQLPLREQERTNWD 786

Query: 136 Y 136
           Y
Sbjct: 787 Y 787



 Score = 38.5 bits (88), Expect = 0.29,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 23/102 (22%), Gaps = 12/102 (11%)

Query: 23  CLRYFFK------AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
            L   F+             P    +     R   A      G+   ++C  C+   P  
Sbjct: 610 TLANLFEVNVGEANSPIRKPPAVSPNAPDFMRNVQAPMLIKEGDRLPVSCLPCDGTYPTG 669

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               E                I       CG C   CP   I
Sbjct: 670 TSKWEKRNVAQFIPEWDPEVCIQ------CGKCVMVCPHATI 705


>gi|170760160|ref|YP_001788602.1| electron transfer flavoprotein, alpha subunit/FixB family protein
           [Clostridium botulinum A3 str. Loch Maree]
 gi|169407149|gb|ACA55560.1| electron transfer flavoprotein, alpha subunit/FixB family protein
           [Clostridium botulinum A3 str. Loch Maree]
          Length = 398

 Score = 50.9 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 12/58 (20%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           E+C AC +CE  CP  AI + +G    +             KC  CG C EACP DAI
Sbjct: 8   EKCKACGICEKQCPFDAIHVVNGLAEVN------------EKCTICGACVEACPFDAI 53



 Score = 37.0 bits (84), Expect = 0.88,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 98  IDMIKCIYCGLCQEACPVDAIV 119
           I   KC  CG+C++ CP DAI 
Sbjct: 5   IIKEKCKACGICEKQCPFDAIH 26


>gi|77460730|ref|YP_350237.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas
           fluorescens Pf0-1]
 gi|77384733|gb|ABA76246.1| putative electron transpor-related protein [Pseudomonas fluorescens
           Pf0-1]
          Length = 404

 Score = 50.9 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 28/78 (35%), Gaps = 10/78 (12%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
              RG    +     E  CI C  C   CP  AI   +           + + + + +C 
Sbjct: 63  DISRGSAPPQVAYIREAECIGCTKCIQACPIDAIVGAAK----------LMHTVIIDECT 112

Query: 105 YCGLCQEACPVDAIVEGP 122
            C LC   CPVD I   P
Sbjct: 113 GCDLCVAPCPVDCIEMHP 130


>gi|313667518|ref|YP_004047802.1| ferredoxin [Neisseria lactamica ST-640]
 gi|313004980|emb|CBN86408.1| putative ferredoxin [Neisseria lactamica 020-06]
          Length = 279

 Score = 50.9 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 24/64 (37%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CPA AI                 + +   +C  CGLC   CPVD I
Sbjct: 75  DETACIGCTACIRACPADAIMGAGK----------FMHTVIADECTGCGLCVAPCPVDCI 124

Query: 119 VEGP 122
              P
Sbjct: 125 HMQP 128



 Score = 34.7 bits (78), Expect = 4.4,   Method: Composition-based stats.
 Identities = 12/23 (52%), Positives = 13/23 (56%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIV 119
            ID   CI C  C  ACP DAI+
Sbjct: 73  RIDETACIGCTACIRACPADAIM 95


>gi|89902050|ref|YP_524521.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodoferax
           ferrireducens T118]
 gi|89346787|gb|ABD70990.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodoferax
           ferrireducens T118]
          Length = 254

 Score = 50.9 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 12/102 (11%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
           T   P  + +T   FRG+  +      +     C+ C  +CP++A+ +E           
Sbjct: 13  TQYIPDLRAATPGGFRGKPVISDAACADG----CQACVQVCPSRAVRLEPTQPDP----- 63

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134
                ID+ +C+ CG C+  CP   +    + +    +R+ L
Sbjct: 64  ---VHIDLGRCVLCGDCEPVCPSRKLSFNNDVKLCATSREAL 102


>gi|56122436|gb|AAV74342.1| pyruvate:ferredoxin oxidoreductase A-like protein [Trichomonas
           vaginalis]
          Length = 1157

 Score = 50.9 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 33/107 (30%), Gaps = 14/107 (13%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRC 86
               T+   +   A+      E++CI C  C  +CP   I                  + 
Sbjct: 658 VPNDTAKYEKRGIAVTVPKWEEKKCIQCNTCAMVCPHAVIRPFLLTQEEAKGLTTLKAKG 717

Query: 87  HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
            +      R  I  + C  C  C  +CP  A+     +  A    +E
Sbjct: 718 KEIKNYQFRIQITPLDCTGCATCVTSCPTKALSMT--YRNAKLDEEE 762


>gi|300716526|ref|YP_003741329.1| Electron transport complex protein [Erwinia billingiae Eb661]
 gi|299062362|emb|CAX59479.1| Electron transport complex protein [Erwinia billingiae Eb661]
          Length = 707

 Score = 50.9 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 45/131 (34%), Gaps = 4/131 (3%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
           T++ P  K +        + +      E+ CI C  C   CPA A+  +       G   
Sbjct: 348 TLDVPVVKITNCILAPAANEM-GDNEAEQSCIRCSACADACPA-ALLPQQLYWYSRGKDH 405

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEI 152
               + ++  CI CG C   CP   I     +       + +  + ER      R+E+  
Sbjct: 406 DKAREHNIADCIECGACAYVCP-SNIPLVQYYRQEKAEIRAIDLEAERNAQAKARFEAR- 463

Query: 153 VRNIVTDSPYR 163
              +  +   R
Sbjct: 464 QERLEREKLAR 474


>gi|320012396|gb|ADW07246.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Streptomyces flavogriseus ATCC 33331]
          Length = 556

 Score = 50.9 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           + C +   C ++CP   I             RT    ID   CI CG C +ACPV+A+ 
Sbjct: 7   QTCCSDATCVSVCPVNCIHPTPEEPD---FGRTEMLYIDPRSCIDCGACADACPVEAVF 62



 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 13/34 (38%), Gaps = 2/34 (5%)

Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
           C     C   CPV+ I   P  E     R E+ Y
Sbjct: 9   CCSDATCVSVCPVNCIHPTP--EEPDFGRTEMLY 40


>gi|224371568|ref|YP_002605732.1| iron-sulfur cluster binding protein [Desulfobacterium autotrophicum
           HRM2]
 gi|223694285|gb|ACN17568.1| iron-sulfur cluster binding protein [Desulfobacterium autotrophicum
           HRM2]
          Length = 375

 Score = 50.9 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 11/62 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C  C +C+  CP  AI+I           +  R  +D+ +CI CGLC   CP  AI
Sbjct: 272 DPGLCTGCGICKKRCPMDAISI-----------KNKRAVLDLDRCIGCGLCVSTCPEKAI 320

Query: 119 VE 120
             
Sbjct: 321 HL 322


>gi|218780440|ref|YP_002431758.1| formate dehydrogenase, alpha subunit [Desulfatibacillum
           alkenivorans AK-01]
 gi|218761824|gb|ACL04290.1| Cytoplasmic formate dehydrogenase, alpha subunit [Desulfatibacillum
           alkenivorans AK-01]
          Length = 918

 Score = 50.9 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 3/83 (3%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
            +   +  + A   +     RCI C  CEA C        +     +   +   Y +   
Sbjct: 154 PSDKEYPKDLANPFFVRDYSRCIKCGRCEAACNE---VQVNLAIDWNRNDKDASYPLANE 210

Query: 102 KCIYCGLCQEACPVDAIVEGPNF 124
            C+YCG C + CPV A+VE    
Sbjct: 211 FCVYCGECVQTCPVGALVEKDVH 233


>gi|148381229|ref|YP_001255770.1| electron transfer flavoprotein alpha-subunit [Clostridium botulinum
           A str. ATCC 3502]
 gi|153933291|ref|YP_001385604.1| electron transfer flavoprotein, alpha subunit/FixB family protein
           [Clostridium botulinum A str. ATCC 19397]
 gi|153936895|ref|YP_001389010.1| electron transfer flavoprotein, alpha subunit/FixB family protein
           [Clostridium botulinum A str. Hall]
 gi|148290713|emb|CAL84844.1| electron transfer flavoprotein alpha-subunit [Clostridium botulinum
           A str. ATCC 3502]
 gi|152929335|gb|ABS34835.1| electron transfer flavoprotein, alpha subunit/FixB family protein
           [Clostridium botulinum A str. ATCC 19397]
 gi|152932809|gb|ABS38308.1| electron transfer flavoprotein, alpha subunit/FixB family protein
           [Clostridium botulinum A str. Hall]
          Length = 398

 Score = 50.9 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 12/58 (20%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           E+C AC +CE  CP  AI + +G    +             KC  CG C EACP DAI
Sbjct: 8   EKCKACGICEKQCPFDAIHVVNGLAEVN------------EKCTICGACVEACPFDAI 53



 Score = 37.0 bits (84), Expect = 0.90,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 98  IDMIKCIYCGLCQEACPVDAIV 119
           I   KC  CG+C++ CP DAI 
Sbjct: 5   IIKEKCKACGICEKQCPFDAIH 26


>gi|294340395|emb|CAZ88776.1| Putative NADH ubiquinone oxidoreductase, 20 kDa subunit [Thiomonas
           sp. 3As]
          Length = 273

 Score = 50.9 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 38/117 (32%), Gaps = 18/117 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA----CKLCEAICPAQAI 78
                 K + T  +P   G        E  L        RC +    C  C A+CPA AI
Sbjct: 5   TWFSLQKGRATTPWPERPGP----DGQEGVLGLPRFDAARCSSEQSGCSDCVAVCPASAI 60

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
                              +D  +C+ C LC E CP  A     ++ F    + +L 
Sbjct: 61  KRSEAGAV----------QLDYARCVGCQLCTEVCPESAFSVSHDWAFGVRDKSDLL 107


>gi|289578863|ref|YP_003477490.1| cobyrinic acid ac-diamide synthase [Thermoanaerobacter italicus
           Ab9]
 gi|297545078|ref|YP_003677380.1| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|289528576|gb|ADD02928.1| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter italicus
           Ab9]
 gi|296842853|gb|ADH61369.1| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 291

 Score = 50.9 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 22/108 (20%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE-------ERCIACKLCEAICPA 75
            L    K K   +   E  + +   +GE   ++   G+       ++CI C LCE +C  
Sbjct: 21  TLSTIVKNKIMADCDVEAPNLNIVLQGEIIEKQDFYGKETAVIDKDKCIECGLCEELCRF 80

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
            AI+                ++++   C  CGLC   CPV+AI     
Sbjct: 81  GAISN---------------FEVNPYYCEGCGLCMYKCPVEAIKLVEE 113


>gi|157377554|ref|YP_001476154.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sediminis HAW-EB3]
 gi|157319928|gb|ABV39026.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sediminis HAW-EB3]
          Length = 563

 Score = 50.9 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 30/82 (36%), Gaps = 9/82 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++C  C  C + CP QA+T                       C+ CGLC+ ACP   I
Sbjct: 429 NSDKCTLCLSCVSTCPTQALTDGGDKPALH---------FVEQDCVQCGLCESACPEKVI 479

Query: 119 VEGPNFEFATETRQELYYDKER 140
              P   F    RQ+    KE 
Sbjct: 480 SLTPQMNFDKAQRQQRQTLKEE 501



 Score = 38.9 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 17/53 (32%), Gaps = 11/53 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C   CPA AI                   ID   C   G C  ACP  AI
Sbjct: 205 CNRCLNFCPADAIQSID-----------KMITIDPYLCHGAGSCTNACPTGAI 246


>gi|119872287|ref|YP_930294.1| thiamine pyrophosphate binding domain-containing protein
           [Pyrobaculum islandicum DSM 4184]
 gi|119673695|gb|ABL87951.1| thiamine pyrophosphate enzyme domain protein TPP-binding
           [Pyrobaculum islandicum DSM 4184]
          Length = 592

 Score = 50.9 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 10/73 (13%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R    + +Y    E+C +C LC  +    AI+     +            +D   C+ CG
Sbjct: 516 RLGVQIPKYQVDLEKCKSCGLCYNLLKCSAISKRPDGKA----------YVDPALCVGCG 565

Query: 108 LCQEACPVDAIVE 120
           +C E CP +A   
Sbjct: 566 VCAEVCPFNAFKL 578


>gi|94498904|ref|ZP_01305442.1| electron transport complex protein RnfC [Oceanobacter sp. RED65]
 gi|94428536|gb|EAT13508.1| electron transport complex protein RnfC [Oceanobacter sp. RED65]
          Length = 727

 Score = 50.9 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 2/94 (2%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C +C   CPAQ +  +        +        ++  CI CG C   CP   I  
Sbjct: 375 QPCIRCGMCTEACPAQ-LLPQQLYWFSKSSNLEQAEQHNIADCIECGACAYVCP-SNIPL 432

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVR 154
              +       ++   DK +     +R+E+ + R
Sbjct: 433 VQYYRHTKGEIKQAQADKIKSDRAKERFEARLAR 466



 Score = 34.7 bits (78), Expect = 4.5,   Method: Composition-based stats.
 Identities = 9/16 (56%), Positives = 10/16 (62%)

Query: 99  DMIKCIYCGLCQEACP 114
               CI CG+C EACP
Sbjct: 373 MEQPCIRCGMCTEACP 388


>gi|17547095|ref|NP_520497.1| ferredoxin protein [Ralstonia solanacearum GMI1000]
 gi|17429396|emb|CAD16083.1| putative ferredoxin protein [Ralstonia solanacearum GMI1000]
          Length = 719

 Score = 50.9 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 9/79 (11%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              RC  C  C + CP+QA+   +               +    C+ CGLC   CP DAI
Sbjct: 587 DRARCTLCMACVSACPSQALRDAAE---------RPVLSMIERNCVQCGLCDTTCPEDAI 637

Query: 119 VEGPNFEFATETRQELYYD 137
              P    + + RQ +  +
Sbjct: 638 ALVPRLNLSADARQPVVLN 656



 Score = 41.2 bits (95), Expect = 0.044,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 7/55 (12%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C  C  +C A AIT +                +    C+ CG C  ACP  A+
Sbjct: 334 VGCDACVRVCSAAAITSQWKDGRGSVH-------VTPNLCVGCGACTTACPTGAL 381



 Score = 37.8 bits (86), Expect = 0.55,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 19/48 (39%)

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               A      SG       +   R  ID+ +C  C  C +ACP DAI
Sbjct: 179 WPIQAGERVQVSGWLGAFDVQWQSRNPIDLDRCTRCNACIDACPEDAI 226


>gi|310778436|ref|YP_003966769.1| NAD-dependent formate dehydrogenase catalytic subunit [Ilyobacter
           polytropus DSM 2926]
 gi|309747759|gb|ADO82421.1| NAD-dependent formate dehydrogenase catalytic subunit [Ilyobacter
           polytropus DSM 2926]
          Length = 890

 Score = 50.9 bits (120), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 1/66 (1%)

Query: 55  RYPNGEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
            +     +CI+C  C  +C   Q   +            +    ID   C +CG C   C
Sbjct: 136 FFTIDSNKCISCGKCVKVCETLQCNNVLKLDPVTKKVLVSEGVKIDESNCAFCGNCVSVC 195

Query: 114 PVDAIV 119
           PV A+ 
Sbjct: 196 PVGALQ 201


>gi|242399261|ref|YP_002994685.1| Membrane-bound hydrogenase MBH 2, subunit Mbh2N (hydrogenase
           subunit) [Thermococcus sibiricus MM 739]
 gi|242265654|gb|ACS90336.1| Membrane-bound hydrogenase MBH 2, subunit Mbh2N (hydrogenase
           subunit) [Thermococcus sibiricus MM 739]
          Length = 152

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 24/102 (23%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
                  FRG+          ERCI C+LC  +CPA A+      R         +    
Sbjct: 48  PVPIPEDFRGKI-----HYDPERCIGCRLCITVCPANAMEWIPELR---------KIRHY 93

Query: 100 MIKCIYCGLCQEACP----------VDAIVEGPNFEFATETR 131
           + +C++C LC + CP          V A+    +F  A   +
Sbjct: 94  VSRCMFCALCVDVCPGKKFPGEEKSVKALSISEDFLLADYDK 135



 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 15/41 (36%)

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
            P          +   D  +CI C LC   CP +A+   P 
Sbjct: 46  HPPVPIPEDFRGKIHYDPERCIGCRLCITVCPANAMEWIPE 86


>gi|224371231|ref|YP_002605395.1| ferredoxin (iron-sulfur cluster-binding protein) [Desulfobacterium
           autotrophicum HRM2]
 gi|223693948|gb|ACN17231.1| ferredoxin (iron-sulfur cluster-binding protein) [Desulfobacterium
           autotrophicum HRM2]
          Length = 384

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 40/123 (32%), Gaps = 23/123 (18%)

Query: 17  VGAFFLCLRYFFKAKTTINYP-FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
           +  F   L+       +      +  + SP+ +            + CI C  C   CP 
Sbjct: 160 LSGFGGTLKNLGMGCASRKGKLDQHSTVSPKIK-----------RKTCIGCGACVDNCPV 208

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
           +AIT+E                I+   CI CG C   CP  ++    N        + + 
Sbjct: 209 KAITLEDDKA-----------TINPEVCIGCGECIIRCPTGSVNIRWNQTIPVFLEKMME 257

Query: 136 YDK 138
           Y K
Sbjct: 258 YTK 260


>gi|218781349|ref|YP_002432667.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218762733|gb|ACL05199.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 369

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 11/61 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +E+C  C  CE +CP  A  +E                ID   CI CG C   CP  AI
Sbjct: 191 NKEKCTGCGSCEDVCPVGAAKLEDEISI-----------IDAKVCIGCGECMTVCPEKAI 239

Query: 119 V 119
            
Sbjct: 240 N 240



 Score = 40.9 bits (94), Expect = 0.067,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 3/62 (4%)

Query: 65  ACKLCEAICPAQAIT---IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
             K  E      AI    +   P      +  +   ++  KC  CG C++ CPV A    
Sbjct: 154 HFKGHELAGWGGAIKNLAMGCAPAAGKQQQHDLTMKVNKEKCTGCGSCEDVCPVGAAKLE 213

Query: 122 PN 123
             
Sbjct: 214 DE 215


>gi|229578417|ref|YP_002836815.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Sulfolobus islandicus Y.G.57.14]
 gi|229582865|ref|YP_002841264.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Sulfolobus islandicus Y.N.15.51]
 gi|228009131|gb|ACP44893.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Sulfolobus islandicus Y.G.57.14]
 gi|228013581|gb|ACP49342.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Sulfolobus islandicus Y.N.15.51]
          Length = 612

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 22/71 (30%), Gaps = 10/71 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L +     E C  C +C       AI      +            ID   CI CG C   
Sbjct: 541 LPKAIVDLEICTGCSICYDYFTCPAIIPRKDKKAE----------IDNYTCIGCGACIPV 590

Query: 113 CPVDAIVEGPN 123
           CP  AI    N
Sbjct: 591 CPFKAISLKGN 601


>gi|30018775|ref|NP_830406.1| formate dehydrogenase alpha chain [Bacillus cereus ATCC 14579]
 gi|229126022|ref|ZP_04255045.1| formate dehydrogenase [Bacillus cereus BDRD-Cer4]
 gi|29894316|gb|AAP07607.1| Formate dehydrogenase alpha chain [Bacillus cereus ATCC 14579]
 gi|228657447|gb|EEL13262.1| formate dehydrogenase [Bacillus cereus BDRD-Cer4]
          Length = 978

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +             R +
Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
             +   I+   C+ CG C   CP +A++E
Sbjct: 183 WDNGVSINESSCVSCGQCVTVCPCNALME 211



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|302877304|ref|YP_003845868.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Gallionella capsiferriformans ES-2]
 gi|302580093|gb|ADL54104.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Gallionella capsiferriformans ES-2]
          Length = 542

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 21/62 (33%), Gaps = 9/62 (14%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C  C  C  +CP  A+      +          +  +   C  CGLC   CP  AI   
Sbjct: 488 NCFECDNCYGVCPDNAVIKLGPGKG---------FQFNYDYCKGCGLCVAECPCGAIAMV 538

Query: 122 PN 123
           P 
Sbjct: 539 PE 540


>gi|269793046|ref|YP_003317950.1| glycyl-radical enzyme activating protein family [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100681|gb|ACZ19668.1| glycyl-radical enzyme activating protein family [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 301

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 17/86 (19%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            +  ERC+ C  C   CPA AI+                  +D  +C+ CG+C +ACP D
Sbjct: 49  WHFPERCVGCGRCALACPAGAIS------------YGEHLRLDRSRCVRCGMCAQACPAD 96

Query: 117 A-----IVEGPNFEFATETRQELYYD 137
           A         P    A   + E++YD
Sbjct: 97  AMRLLGWAMTPRELLAQALKDEIFYD 122



 Score = 38.9 bits (89), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 21/68 (30%), Gaps = 4/68 (5%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           +RY   +   I        CP +     +                   +C+ CG C  AC
Sbjct: 10  KRYSIHDGPGIRTTFHLKGCPLRCRWCHNPEGLDFEPSVW----HFPERCVGCGRCALAC 65

Query: 114 PVDAIVEG 121
           P  AI  G
Sbjct: 66  PAGAISYG 73


>gi|163794803|ref|ZP_02188773.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [alpha
           proteobacterium BAL199]
 gi|159180076|gb|EDP64601.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [alpha
           proteobacterium BAL199]
          Length = 676

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 25/92 (27%), Gaps = 13/92 (14%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P E             +       E C  C  C + CPA A+                  
Sbjct: 500 PDEPLPLPIGAPYGRVVV----DTEGCTLCLACVSACPASALQDNPDKPQLL-------- 547

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
                 C+ CGLC   CP   I   P +  A 
Sbjct: 548 -FQEDACVQCGLCAATCPEKVITLEPRYALAD 578



 Score = 38.5 bits (88), Expect = 0.31,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 19/55 (34%), Gaps = 11/55 (20%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             C  C  +CPA AI                   +D   C  CGLC   CP  AI
Sbjct: 284 TGCTRCLDLCPASAIAPAGD-----------VVSVDPALCGGCGLCAGTCPTSAI 327


>gi|332298988|ref|YP_004440910.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Treponema
           brennaborense DSM 12168]
 gi|332182091|gb|AEE17779.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Treponema
           brennaborense DSM 12168]
          Length = 1186

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 27/98 (27%), Gaps = 24/98 (24%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ---------------- 76
           T    FEK + + +                CI C  C  +CP                  
Sbjct: 675 TATTQFEKRAIAEKVPEW--------DPSVCIQCGQCTVVCPHAVIRMKTLSDDAAAKAP 726

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           A    +  +      + V   I    C  CGLC   CP
Sbjct: 727 AGFKSADLKPKAEAGKKVVLQISTEDCTGCGLCVAVCP 764



 Score = 35.5 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 8/21 (38%), Positives = 8/21 (38%)

Query: 100 MIKCIYCGLCQEACPVDAIVE 120
              CI CG C   CP   I  
Sbjct: 694 PSVCIQCGQCTVVCPHAVIRM 714


>gi|327401724|ref|YP_004342563.1| methyl-viologen-reducing hydrogenase subunit delta [Archaeoglobus
           veneficus SNP6]
 gi|327317232|gb|AEA47848.1| methyl-viologen-reducing hydrogenase delta subunit [Archaeoglobus
           veneficus SNP6]
          Length = 756

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 29/96 (30%), Gaps = 8/96 (8%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA-------ITIESGPRCHDGTRRT 93
              +  F              RCI+C  C  +CP          ++              
Sbjct: 221 WKENGNFVARIRKAPQYVDPSRCISCGKCSEVCPVDVENSFDCGMSKRKAIDKEFKLAIP 280

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
             Y+I    C  CG C EACP +AI      E   E
Sbjct: 281 DIYNIVEE-CTKCGECVEACPTNAINLDAEEEIIEE 315



 Score = 42.4 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 13/67 (19%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++ C AC++CEA CP  AI ++                     C  CGLC  ACP +AI
Sbjct: 562 DQDLCSACRICEAACPHGAIDVKDFAYVD------------PAFCQGCGLCMAACPSNAI 609

Query: 119 VEGPNFE 125
               NFE
Sbjct: 610 QLV-NFE 615


>gi|323702453|ref|ZP_08114117.1| Electron transfer flavoprotein alpha/beta-subunit [Desulfotomaculum
           nigrificans DSM 574]
 gi|323532592|gb|EGB22467.1| Electron transfer flavoprotein alpha/beta-subunit [Desulfotomaculum
           nigrificans DSM 574]
          Length = 448

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 10/66 (15%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
              N    C+ C+ C   CP +A+ I                ++   KC+ CG C E CP
Sbjct: 1   MAVNVSPACMGCQACITTCPYEALFINDNG----------VCEVIKDKCVECGKCVEVCP 50

Query: 115 VDAIVE 120
           V+A+  
Sbjct: 51  VEALSL 56


>gi|291542332|emb|CBL15442.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta
           subunits [Ruminococcus bromii L2-63]
          Length = 286

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 40/113 (35%), Gaps = 22/113 (19%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
               G     +    E+ CI C +C   C   AIT+E G              +D  KC 
Sbjct: 147 ENDVGIKGGIKVSWKEDACIGCGVCVKACRQGAITLEDGKIS-----------VDNSKCN 195

Query: 105 YCGLCQEACPVDAIVEGPNFEFA-----------TETRQELYYDKERLLNNGD 146
           YCG C +ACP DA      +  +            E       +KE+L+   D
Sbjct: 196 YCGRCFKACPTDAWNTIHGYIVSFGGLFGNSINKGEKIIPFIENKEKLMEICD 248


>gi|209516646|ref|ZP_03265499.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia sp.
           H160]
 gi|209502921|gb|EEA02924.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia sp.
           H160]
          Length = 412

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 11/68 (16%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             LR++    E CI C  CE  CP  AIT +              Y +    C  C  C 
Sbjct: 8   EVLRQHLIDPEICIRCNTCEETCPIDAITHDDN-----------NYVVKADVCNGCMACV 56

Query: 111 EACPVDAI 118
             CP  AI
Sbjct: 57  PPCPTGAI 64



 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPN 123
           ID   CI C  C+E CP+DAI    N
Sbjct: 15  IDPEICIRCNTCEETCPIDAITHDDN 40


>gi|221069698|ref|ZP_03545803.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Comamonas
           testosteroni KF-1]
 gi|220714721|gb|EED70089.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Comamonas
           testosteroni KF-1]
          Length = 433

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 11/70 (15%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
               L+++    E CI C  CEA CP  AIT +              Y +   KC  C  
Sbjct: 8   ENGILKQHLIDPEICIRCNTCEATCPVDAITHDDN-----------NYVVMADKCNGCMD 56

Query: 109 CQEACPVDAI 118
           C   CP  +I
Sbjct: 57  CISPCPTGSI 66



 Score = 38.2 bits (87), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 14/26 (53%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPN 123
           ID   CI C  C+  CPVDAI    N
Sbjct: 17  IDPEICIRCNTCEATCPVDAITHDDN 42


>gi|218884497|ref|YP_002428879.1| Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin
           oxidoreductases, delta subunit [Desulfurococcus
           kamchatkensis 1221n]
 gi|218766113|gb|ACL11512.1| Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin
           oxidoreductases, delta subunit [Desulfurococcus
           kamchatkensis 1221n]
          Length = 93

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 32/95 (33%), Gaps = 11/95 (11%)

Query: 30  AKTTINYPFEKGSTSPRFR-GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88
              T   P  + +     + G     +    + +C  C  CE  CP   I +E       
Sbjct: 7   PPKTGQPPLTRPNIGVAGKTGFWRTTKPIVDQSKCTRCYQCEIFCPVNVIRVEPE----- 61

Query: 89  GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                    ID   C  CG+C + CPV+AI     
Sbjct: 62  -----TGVKIDYDYCKGCGVCADVCPVNAISMVEE 91


>gi|126734228|ref|ZP_01749975.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Roseobacter sp.
           CCS2]
 gi|126717094|gb|EBA13958.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Roseobacter sp.
           CCS2]
          Length = 643

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 9/82 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + C  C  C ++CP+ A+                +       C+ CGLC + CP DAI
Sbjct: 492 NTDSCTLCLSCVSLCPSGALGDNPDK---------PQLRFQEDACLQCGLCVQICPEDAI 542

Query: 119 VEGPNFEFATETRQELYYDKER 140
              P  +       +   ++E 
Sbjct: 543 TLAPRLDLTDAALNQTVLNEEE 564



 Score = 40.9 bits (94), Expect = 0.059,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 11/55 (20%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             C  C  +CP  AI+ E                ID + C  CG C   CP  AI
Sbjct: 273 TGCTNCLDLCPTGAISPEGD-----------HVSIDPMICAGCGACSAGCPSGAI 316


>gi|299136918|ref|ZP_07030101.1| formate dehydrogenase, alpha subunit [Acidobacterium sp. MP5ACTX8]
 gi|298601433|gb|EFI57588.1| formate dehydrogenase, alpha subunit [Acidobacterium sp. MP5ACTX8]
          Length = 1005

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 3/85 (3%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR--- 95
           E+  T   +  + +   Y     +CI C  C   C    +           + R +    
Sbjct: 140 ERPFTKKPYEVDMSNPFYRYDPNQCILCGRCVQACQTVQVNETLTIGWELDSPRVLWDGG 199

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVE 120
             I    C+ CG C   CP +A++E
Sbjct: 200 MQIGGSSCVSCGHCITVCPCNALME 224



 Score = 40.9 bits (94), Expect = 0.067,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 26/83 (31%), Gaps = 9/83 (10%)

Query: 48  RGEHALRRYPNGEERCIACKL----CEAICPAQAITIESGPRCHDGTRRTV-----RYDI 98
           R E       N    C  C      C     A A+ +E   R        V      Y  
Sbjct: 100 RAEAFDVILGNHMLYCTVCDNNNENCTVHNTALAMKVEHQERPFTKKPYEVDMSNPFYRY 159

Query: 99  DMIKCIYCGLCQEACPVDAIVEG 121
           D  +CI CG C +AC    + E 
Sbjct: 160 DPNQCILCGRCVQACQTVQVNET 182


>gi|168179067|ref|ZP_02613731.1| electron transfer flavoprotein, alpha subunit/FixB family protein
           [Clostridium botulinum NCTC 2916]
 gi|182670138|gb|EDT82114.1| electron transfer flavoprotein, alpha subunit/FixB family protein
           [Clostridium botulinum NCTC 2916]
          Length = 398

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 12/58 (20%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           E+C AC +CE  CP  AI + +G    +             KC  CG C EACP DAI
Sbjct: 8   EKCKACGICEKQCPFDAIHVVNGLAEVN------------EKCTICGACVEACPFDAI 53



 Score = 37.0 bits (84), Expect = 0.94,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 98  IDMIKCIYCGLCQEACPVDAIV 119
           I   KC  CG+C++ CP DAI 
Sbjct: 5   IIKEKCKACGICEKQCPFDAIH 26


>gi|11498862|ref|NP_070091.1| iron-sulfur cluster binding protein [Archaeoglobus fulgidus DSM
           4304]
 gi|2649316|gb|AAB89980.1| iron-sulfur cluster binding protein [Archaeoglobus fulgidus DSM
           4304]
          Length = 369

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 10/89 (11%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              +CIAC +C   CP +A+  +               +++  KC+ CG+C   CPV+AI
Sbjct: 286 DSSKCIACGICMLRCPMKAVKAKINREPA---------NVEAEKCLGCGVCVPTCPVEAI 336

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDR 147
                 E   E    L Y +E L + G  
Sbjct: 337 ELVEREEL-QEWPDHLTYYQELLADRGKD 364



 Score = 37.0 bits (84), Expect = 0.97,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 4/65 (6%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C  C  C A   A    I            +    +D  KCI CG+C   CP+ A+    
Sbjct: 254 CNCCSDCCAFFRA----IHEAGHPKTIAHSSYVASVDSSKCIACGICMLRCPMKAVKAKI 309

Query: 123 NFEFA 127
           N E A
Sbjct: 310 NREPA 314


>gi|229110994|ref|ZP_04240554.1| formate dehydrogenase [Bacillus cereus Rock1-15]
 gi|228672478|gb|EEL27762.1| formate dehydrogenase [Bacillus cereus Rock1-15]
          Length = 975

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 7/92 (7%)

Query: 33  TINYPFE-KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
              YP+E K   S           Y     +CIAC  C  +C    +             
Sbjct: 119 HQKYPYEPKVDVSEVDMTHP---FYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERP 175

Query: 92  RTVR---YDIDMIKCIYCGLCQEACPVDAIVE 120
           R +     +I+   C+ CG C   CP +A++E
Sbjct: 176 RVIWDEGVNINDSSCVSCGQCVTICPCNALME 207



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 87  RLLENHLLYCTVCDNNNGNCKLHNTAELMGIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 146

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 147 CIACGQCVEVC 157


>gi|187932967|ref|YP_001886497.1| iron hydrogenase, electron-transfer subunit [Clostridium botulinum
           B str. Eklund 17B]
 gi|187721120|gb|ACD22341.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum B str. Eklund 17B]
          Length = 626

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 10/68 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L  Y   +++C  C  C  +CPA AIT E              Y ID  KCI CG C + 
Sbjct: 568 LMSYEIDKDKCKGCSKCARMCPAGAITGEIKKP----------YTIDQSKCIKCGACMDG 617

Query: 113 CPVDAIVE 120
           C   AI  
Sbjct: 618 CAFKAIQL 625


>gi|182417446|ref|ZP_02948773.1| nitroreductase family protein fused to ferredoxin domain
           [Clostridium butyricum 5521]
 gi|237665843|ref|ZP_04525831.1| 4Fe-4S binding domain protein [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182378615|gb|EDT76142.1| nitroreductase family protein fused to ferredoxin domain
           [Clostridium butyricum 5521]
 gi|237658790|gb|EEP56342.1| nitroreductase family protein [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 278

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 16/107 (14%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            +   +++CI C  C   CP + I++                +I+   C+ CG C   CP
Sbjct: 1   MFKVNKDKCIGCSQCVKDCPVRVISLIDNKA-----------EINNNNCMKCGHCIAICP 49

Query: 115 VDAIVEGPNF---EFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158
           V+A+    ++   E  +  +     D + LL N  ++   + +    
Sbjct: 50  VNAVS-TDDYNMEEVISYDKNSFSVDPDNLL-NFIKFRRSVRKFKDK 94


>gi|146292946|ref|YP_001183370.1| electron transport complex protein RnfC [Shewanella putrefaciens
           CN-32]
 gi|145564636|gb|ABP75571.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella
           putrefaciens CN-32]
          Length = 793

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 47/126 (37%), Gaps = 11/126 (8%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
           TIN P  KG+          +   P   + CI C  C  +CPA        P+      +
Sbjct: 350 TINVPILKGTNCILVPSNQEIGVTPEE-KACIRCGECANVCPA-----LLLPQQLFWHAK 403

Query: 93  TVRYD----IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRW 148
              YD     ++  CI CG C   CP   I     +  A    ++   +K++      R+
Sbjct: 404 AEEYDKAASFNLKDCIECGCCSYVCP-SDIPLVEYYRIAKSALKQTADEKQQAERAKHRF 462

Query: 149 ESEIVR 154
           E+ + R
Sbjct: 463 EARLAR 468


>gi|319426525|gb|ADV54599.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella
           putrefaciens 200]
          Length = 793

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 47/126 (37%), Gaps = 11/126 (8%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
           TIN P  KG+          +   P   + CI C  C  +CPA        P+      +
Sbjct: 350 TINVPILKGTNCILVPSNQEIGVTPEE-KACIRCGECANVCPA-----LLLPQQLFWHAK 403

Query: 93  TVRYD----IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRW 148
              YD     ++  CI CG C   CP   I     +  A    ++   +K++      R+
Sbjct: 404 AEEYDKAASFNLKDCIECGCCSYVCP-SDIPLVEYYRIAKSALKQTADEKQQAERAKHRF 462

Query: 149 ESEIVR 154
           E+ + R
Sbjct: 463 EARLAR 468


>gi|123453905|ref|XP_001314811.1| pyruvate:ferredoxin oxidoreductase E [Trichomonas vaginalis G3]
 gi|121897468|gb|EAY02588.1| pyruvate:ferredoxin oxidoreductase E [Trichomonas vaginalis G3]
          Length = 1157

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 12/91 (13%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPA-----------QAITIESGPRCHDGTR 91
           TS   +   A+      E++CI C  C  +CP            +A  + +        +
Sbjct: 662 TSQWEKRGIAVDVPKWDEKKCIQCNTCSMVCPHAVIRPFLLTDEEAKGMVTLKAKGKEIK 721

Query: 92  -RTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
               R  I  + C  CG C  +CP  A+   
Sbjct: 722 DYRFRIQISPLDCTGCGTCVTSCPTQALSMQ 752


>gi|120598969|ref|YP_963543.1| electron transport complex protein RnfC [Shewanella sp. W3-18-1]
 gi|120559062|gb|ABM24989.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella
           sp. W3-18-1]
          Length = 793

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 47/126 (37%), Gaps = 11/126 (8%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
           TIN P  KG+          +   P   + CI C  C  +CPA        P+      +
Sbjct: 350 TINVPILKGTNCILVPSNQEIGVTPEE-KACIRCGECANVCPA-----LLLPQQLFWHAK 403

Query: 93  TVRYD----IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRW 148
              YD     ++  CI CG C   CP   I     +  A    ++   +K++      R+
Sbjct: 404 AEEYDKAASFNLKDCIECGCCSYVCP-SDIPLVEYYRIAKSALKQTADEKQQAERAKHRF 462

Query: 149 ESEIVR 154
           E+ + R
Sbjct: 463 EARLAR 468


>gi|225570897|ref|ZP_03779920.1| hypothetical protein CLOHYLEM_07001 [Clostridium hylemonae DSM
           15053]
 gi|225160359|gb|EEG72978.1| hypothetical protein CLOHYLEM_07001 [Clostridium hylemonae DSM
           15053]
          Length = 263

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 17/94 (18%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                +E+CI C  C+  CPA AI I  G                   C++CG C   CP
Sbjct: 1   MIQIDKEKCIGCGACKRDCPADAIKIREGKAEVFK------------DCLHCGHCVAVCP 48

Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLNNGDRW 148
           V+A    P ++ A        Y+KE+   + D +
Sbjct: 49  VNAAAI-PEYDMAEVE----AYEKEKFTLDADHY 77


>gi|170751379|ref|YP_001757639.1| formate dehydrogenase, alpha subunit [Methylobacterium
           radiotolerans JCM 2831]
 gi|170657901|gb|ACB26956.1| formate dehydrogenase, alpha subunit [Methylobacterium
           radiotolerans JCM 2831]
          Length = 953

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 26/81 (32%), Gaps = 2/81 (2%)

Query: 55  RYPNGEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
            +     +CI C  C   C        +    R  D        +    +C+ CG C +A
Sbjct: 165 YFTYDPSKCIVCNRCVRACEEVQGTFALTIAGRGFDSRVAAGPTNFFESECVSCGACVQA 224

Query: 113 CPVDAIVEGPNFEFATETRQE 133
           CP   + E    E+      E
Sbjct: 225 CPTATLQEKSIHEYGQPEHAE 245


>gi|196034106|ref|ZP_03101516.1| molybdopterin oxidoreductase family protein [Bacillus cereus W]
 gi|195993180|gb|EDX57138.1| molybdopterin oxidoreductase family protein [Bacillus cereus W]
          Length = 979

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 7/92 (7%)

Query: 33  TINYPFE-KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
              YP+E K   S           Y     +CIAC  C  +C    +             
Sbjct: 123 HQKYPYEPKVDVSEVDMTHP---FYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERP 179

Query: 92  RTVR---YDIDMIKCIYCGLCQEACPVDAIVE 120
           R +     +I+   C+ CG C   CP +A++E
Sbjct: 180 RVIWDEGVNINDSSCVSCGQCVTICPCNALME 211



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 91  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|91226395|ref|ZP_01261194.1| putative formate dehydrogenase, alpha subunit [Vibrio alginolyticus
           12G01]
 gi|91189209|gb|EAS75489.1| putative formate dehydrogenase, alpha subunit [Vibrio alginolyticus
           12G01]
          Length = 1429

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 14/79 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIE--------------SGPRCHDGTRRTVRYDIDMIKCI 104
              RCI+C  C   C  +A+                    R H G+ +     +    C+
Sbjct: 648 DANRCISCGQCIQACRDKAVHGVLNFVCDKQGRPALRPDDRPHFGSNKNGLTLMGDSNCV 707

Query: 105 YCGLCQEACPVDAIVEGPN 123
            CG C + CP  A+V+  +
Sbjct: 708 QCGACVQVCPTGAMVDSRD 726


>gi|16801792|ref|NP_472060.1| hypothetical protein lin2731 [Listeria innocua Clip11262]
 gi|16415267|emb|CAC97957.1| lin2731 [Listeria innocua Clip11262]
          Length = 995

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 3/84 (3%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           +      +  +     Y    ++CI C  C   C    +             R +  D  
Sbjct: 125 RPYREKGYLNDFTHPFYRYDPDQCILCGRCVEACQQVQVNETLSIDWERSQPRVIWDDDR 184

Query: 100 MIK---CIYCGLCQEACPVDAIVE 120
                 C+ CGLC   CP +A++E
Sbjct: 185 PANLSSCVSCGLCATVCPCNALME 208



 Score = 39.3 bits (90), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 9/69 (13%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCI 104
           R   N    C  C      C+     + + +E   R +             Y  D  +CI
Sbjct: 90  RILENHLLYCTVCDNNNGNCKVHNTTELLGVEKQDRPYREKGYLNDFTHPFYRYDPDQCI 149

Query: 105 YCGLCQEAC 113
            CG C EAC
Sbjct: 150 LCGRCVEAC 158


>gi|163847637|ref|YP_001635681.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing
           protein [Chloroflexus aurantiacus J-10-fl]
 gi|222525495|ref|YP_002569966.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing
           protein [Chloroflexus sp. Y-400-fl]
 gi|163668926|gb|ABY35292.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Chloroflexus aurantiacus J-10-fl]
 gi|222449374|gb|ACM53640.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Chloroflexus sp. Y-400-fl]
          Length = 1192

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 26/92 (28%), Gaps = 16/92 (17%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPR 85
              T+   +   AL         CI C  C  +CP                A        
Sbjct: 670 PTGTTKWEKRNIALEIPVWDPNICIQCNKCVFVCPHATIRAKVYPEEALAGAPEGFLSAP 729

Query: 86  CHDGTRRTVRY--DIDMIKCIYCGLCQEACPV 115
                    RY   +    C  CGLC EACPV
Sbjct: 730 ARFKEFPGQRYTLQVAPEDCTGCGLCVEACPV 761


>gi|298369582|ref|ZP_06980899.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           sp. oral taxon 014 str. F0314]
 gi|298282139|gb|EFI23627.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           sp. oral taxon 014 str. F0314]
          Length = 284

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 10/66 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C  C   CP  AI             R + + +   +C  CGLC   CPVD
Sbjct: 74  WIDETACIGCTACIRACPVDAIMG----------ARKLMHTVIADECTGCGLCVAPCPVD 123

Query: 117 AIVEGP 122
            I   P
Sbjct: 124 CIHMQP 129



 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 15/34 (44%)

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
                +      ID   CI C  C  ACPVDAI+
Sbjct: 63  APAKIQHHALAWIDETACIGCTACIRACPVDAIM 96


>gi|154496907|ref|ZP_02035603.1| hypothetical protein BACCAP_01200 [Bacteroides capillosus ATCC
           29799]
 gi|150273865|gb|EDN00978.1| hypothetical protein BACCAP_01200 [Bacteroides capillosus ATCC
           29799]
          Length = 507

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID------MIKCIYCGLCQ 110
              +++CI C  C  +C  +AI I+  P         +  DI+        KC+ CG+C 
Sbjct: 148 HIDQDKCIKCGRCADVCSYKAIIIQERPCAVACGVDAIHTDINGKAEIDYDKCVSCGMCL 207

Query: 111 EACPVDAI 118
             CP  AI
Sbjct: 208 VNCPFGAI 215



 Score = 40.9 bits (94), Expect = 0.068,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 11/61 (18%)

Query: 63  CIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           C  C    CE +CP  AI ++         R   R  ID  KCI CG C + C   AI+ 
Sbjct: 121 CQGCLAHPCEEVCPKDAIKLD---------RYNGRSHIDQDKCIKCGRCADVCSYKAIII 171

Query: 121 G 121
            
Sbjct: 172 Q 172


>gi|124485168|ref|YP_001029784.1| hypothetical protein Mlab_0341 [Methanocorpusculum labreanum Z]
 gi|124362709|gb|ABN06517.1| Cobyrinic acid a,c-diamide synthase [Methanocorpusculum labreanum
           Z]
          Length = 293

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 34/101 (33%), Gaps = 18/101 (17%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           +   +  F G  A    P     C  C  C   C   A+ ++ G            Y I+
Sbjct: 49  RLIRTDPFMGMKAAVIDPE---LCTECGACLEHCRFHAVEMDDGA-----------YLIN 94

Query: 100 MIKCIYCGLCQEACPVDAIVEGPN----FEFATETRQELYY 136
             +C  C +C   CP DA+   P       ++   R  L +
Sbjct: 95  PSRCEGCAVCTIVCPADAVSMQPRQTGVIMYSEVDRGHLVH 135


>gi|15895764|ref|NP_349113.1| pyruvate ferredoxin oxidoreductase [Clostridium acetobutylicum ATCC
           824]
 gi|15025520|gb|AAK80453.1|AE007748_9 Pyruvate ferredoxin oxidoreductase [Clostridium acetobutylicum ATCC
           824]
 gi|325509914|gb|ADZ21550.1| Pyruvate ferredoxin oxidoreductase [Clostridium acetobutylicum EA
           2018]
          Length = 1173

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 32/104 (30%), Gaps = 18/104 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY 96
            A+       ++CI C  C  +CP                A       +        + Y
Sbjct: 677 IAVNVPEWQIDKCIQCNQCAYVCPHSVIRACLLDDEEKENAPERFVTKKPVGKGLEHLHY 736

Query: 97  --DIDMIKCIYCGLCQEACPVD--AIVEGPNFEFATETRQELYY 136
              I  + C  CG C + CP    A++  P  E   E  +   Y
Sbjct: 737 KIQISPLDCTGCGNCADICPAPGKALIMKPAAEQIEEQSENFEY 780


>gi|296242566|ref|YP_003650053.1| pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta
           [Thermosphaera aggregans DSM 11486]
 gi|296095150|gb|ADG91101.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Thermosphaera aggregans DSM 11486]
          Length = 93

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 25/65 (38%), Gaps = 10/65 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              +C  C  CE  CP   I +E                ID+  C  CG+C E CPV AI
Sbjct: 37  DNGKCTRCFTCETYCPVNVIRVEPE----------TGVSIDLDYCKGCGVCAEVCPVKAI 86

Query: 119 VEGPN 123
              P 
Sbjct: 87  SMVPE 91


>gi|226950711|ref|YP_002805802.1| electron transfer flavoprotein, alpha subunit/FixB family protein
           [Clostridium botulinum A2 str. Kyoto]
 gi|226842543|gb|ACO85209.1| electron transfer flavoprotein, alpha subunit/FixB family protein
           [Clostridium botulinum A2 str. Kyoto]
          Length = 398

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 12/58 (20%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           E+C AC +CE  CP  AI + +G    +             KC  CG C EACP DAI
Sbjct: 8   EKCKACGICEKQCPFDAIHVVNGLAEVN------------EKCTICGACVEACPFDAI 53



 Score = 37.0 bits (84), Expect = 0.95,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 98  IDMIKCIYCGLCQEACPVDAIV 119
           I   KC  CG+C++ CP DAI 
Sbjct: 5   IIKEKCKACGICEKQCPFDAIH 26


>gi|170696015|ref|ZP_02887153.1| dihydroorotate dehydrogenase family protein [Burkholderia graminis
           C4D1M]
 gi|170139095|gb|EDT07285.1| dihydroorotate dehydrogenase family protein [Burkholderia graminis
           C4D1M]
          Length = 442

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 8/75 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117
            +++CI C LC   C   A    +  +          +++   +C+ C LC   CPV   
Sbjct: 341 DQDKCIKCGLCHIACEDTAHQAITKEKDGV-----RHFEVVDSECVGCNLCMHVCPVEQC 395

Query: 118 IVE--GPNFEFATET 130
           I      N E+A  T
Sbjct: 396 ITMERVDNGEYANWT 410


>gi|154685660|ref|YP_001420821.1| YjgC [Bacillus amyloliquefaciens FZB42]
 gi|154351511|gb|ABS73590.1| YjgC [Bacillus amyloliquefaciens FZB42]
          Length = 996

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 9/101 (8%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            ++         + PF++           +   Y    ++CI C  C   C    +T   
Sbjct: 125 TVKEM--KINHQSIPFDQKPYPKD----ESNPFYRYDPDQCILCGRCVEACQDVQVTETL 178

Query: 83  GPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPVDAIVE 120
                    R +      I+   C+ CG C   CP +A++E
Sbjct: 179 SIDWERKRPRVIWDQDVPINESSCVSCGHCSTVCPCNAMME 219



 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 21/66 (31%), Gaps = 9/66 (13%)

Query: 57  PNGEERCIAC----KLCEAICPA-----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
            N E  C  C      CE             +I    + +        Y  D  +CI CG
Sbjct: 104 HNHELYCTVCDYNNGSCEVHNTVKEMKINHQSIPFDQKPYPKDESNPFYRYDPDQCILCG 163

Query: 108 LCQEAC 113
            C EAC
Sbjct: 164 RCVEAC 169


>gi|86158682|ref|YP_465467.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85775193|gb|ABC82030.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 438

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 10/86 (11%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           +  ERC+ C  C   CP  AI     P      R+  R  +D  +C+ CG+C   C   A
Sbjct: 290 SDRERCLGCGKCSKKCPVGAIPRVPDPDPRF--RKHGRPQVDEARCLGCGVCTLTCNPGA 347

Query: 118 IVEGPNFEFATETRQELYYDKERLLN 143
           +            R +     E LL 
Sbjct: 348 MKLHH--------RTQRVLHPEDLLE 365


>gi|308049948|ref|YP_003913514.1| electron transport complex, RnfABCDGE type, C subunit [Ferrimonas
           balearica DSM 9799]
 gi|307632138|gb|ADN76440.1| electron transport complex, RnfABCDGE type, C subunit [Ferrimonas
           balearica DSM 9799]
          Length = 895

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 3/103 (2%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             CI C  C  +CP Q++  +                +++  CI CG C   CP   I  
Sbjct: 379 RNCIRCGECAQVCP-QSLLPQQLYWHSQAAEYDKAAQLNLSDCIECGACAFVCP-SDIPL 436

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
             ++  A    ++      +      R+++   R +  +   R
Sbjct: 437 VHHYRIAKAELRDAAQKATKAEEAKLRFDARQAR-LEKEKAER 478


>gi|307331425|ref|ZP_07610543.1| molybdopterin oxidoreductase Fe4S4 region [Streptomyces
           violaceusniger Tu 4113]
 gi|306882924|gb|EFN13992.1| molybdopterin oxidoreductase Fe4S4 region [Streptomyces
           violaceusniger Tu 4113]
          Length = 290

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 4/75 (5%)

Query: 56  YPNGEERCIACKLCEAIC--PAQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQE 111
           Y    ++CI C  C   C    Q     +        R +  +D  +    C+YCG C E
Sbjct: 145 YVRDYDKCILCYKCVDACGEQWQNTFAIAVAGRGFDARISTEHDAPLTDSACVYCGNCIE 204

Query: 112 ACPVDAIVEGPNFEF 126
            CP  A+     F+ 
Sbjct: 205 VCPTGALSFKTEFDM 219


>gi|294101031|ref|YP_003552889.1| Cobyrinic acid ac-diamide synthase [Aminobacterium colombiense DSM
           12261]
 gi|293616011|gb|ADE56165.1| Cobyrinic acid ac-diamide synthase [Aminobacterium colombiense DSM
           12261]
          Length = 292

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 33/104 (31%), Gaps = 14/104 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ERC  C  C   C   A+   +               +   KC  CG C   CP  AI
Sbjct: 67  DTERCTVCGGCVGFCRFNALEKANNG-----------ITLLPWKCEGCGGCALVCPHQAI 115

Query: 119 VEGPNFEFATETRQELYYDK--ERLLNNGDRWESEIVRNIVTDS 160
               ++E     R    Y       L+ G+     +V  +  +S
Sbjct: 116 SM-HSYEQGQYWRGTTTYGPLWHARLHAGEENSGMLVARLKKES 158


>gi|260892256|ref|YP_003238353.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Ammonifex degensii KC4]
 gi|260864397|gb|ACX51503.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Ammonifex degensii KC4]
          Length = 995

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 28/89 (31%), Gaps = 7/89 (7%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------ 97
              FR +  L       E C AC +C  +CP +     +                     
Sbjct: 88  PGNFRVKLELHPRGVKVEECRACGVCFKVCPVEVPDEFNQGLSSRKAIYQPYPQAFPRAA 147

Query: 98  -IDMIKCIYCGLCQEACPVDAIVEGPNFE 125
            ID   C  CG C++ CP  AI      E
Sbjct: 148 VIDWGSCTRCGRCRDTCPTKAIDLEMEPE 176



 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 26/76 (34%), Gaps = 15/76 (19%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              +C+AC  C  +CP  A                    I+ + C  CG C   CP  AI
Sbjct: 923 DPAKCVACLTCVRVCPYGAPRYTPEK---------GVVAIEPLACQGCGTCVGECPNAAI 973

Query: 119 VEGPNFEFATETRQEL 134
                 E     R+++
Sbjct: 974 ------ELEGYRREQM 983


>gi|260576927|ref|ZP_05844909.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Rhodobacter
           sp. SW2]
 gi|259020863|gb|EEW24177.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Rhodobacter
           sp. SW2]
          Length = 544

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 9/62 (14%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C  C  C  +CP  A+                 + I++  C  CG+C   CP  AI   
Sbjct: 490 NCFECDTCYGVCPDNAVIKLGSGMG---------FTINLDYCKGCGICAAECPCGAIDMV 540

Query: 122 PN 123
           P 
Sbjct: 541 PE 542


>gi|326202787|ref|ZP_08192654.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Clostridium
           papyrosolvens DSM 2782]
 gi|325986864|gb|EGD47693.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Clostridium
           papyrosolvens DSM 2782]
          Length = 1183

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 35/110 (31%), Gaps = 18/110 (16%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES--------------- 82
           FE+G+++   RG   L    +  + C+ C  C  +C    I                   
Sbjct: 673 FEQGASAYEKRGTAVLVPEWD-AKLCLQCNSCAFVCSHATIRPFMLSEDEIKAAPANIKL 731

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130
                  +       +  + C+ CG C   CPV   AI   P    A E 
Sbjct: 732 ADTKPKASEYKFTMSVSPLDCMGCGECITVCPVKEKAIKMVPQESQAEEQ 781


>gi|222097027|ref|YP_002531084.1| formate dehydrogenase, alpha subunit [Bacillus cereus Q1]
 gi|221241085|gb|ACM13795.1| formate dehydrogenase, alpha subunit [Bacillus cereus Q1]
          Length = 979

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 7/92 (7%)

Query: 33  TINYPFE-KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
              YP+E K   S           Y     +CIAC  C  +C    +             
Sbjct: 123 HQKYPYEPKVDVSEVDMTHP---FYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERP 179

Query: 92  RTVR---YDIDMIKCIYCGLCQEACPVDAIVE 120
           R +     +I+   C+ CG C   CP +A++E
Sbjct: 180 RVIWDEGVNINDSSCVSCGQCVTICPCNALME 211



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 91  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|254173091|ref|ZP_04879765.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Thermococcus sp. AM4]
 gi|214033247|gb|EEB74075.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family
           [Thermococcus sp. AM4]
          Length = 599

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 10/66 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L RY    E+C  C  C   CPA AIT E          +   ++ID   CI CG C E 
Sbjct: 537 LIRYVIIPEKCTGCTACAIFCPANAITGE----------KLKPHEIDQSACIKCGTCYEV 586

Query: 113 CPVDAI 118
           C  +AI
Sbjct: 587 CRFNAI 592



 Score = 38.5 bits (88), Expect = 0.30,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 15/39 (38%)

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              G       +  +RY I   KC  C  C   CP +AI
Sbjct: 524 HIEGKCPAKVCKPLIRYVIIPEKCTGCTACAIFCPANAI 562


>gi|206968949|ref|ZP_03229904.1| molybdopterin oxidoreductase family protein [Bacillus cereus
           AH1134]
 gi|206735990|gb|EDZ53148.1| molybdopterin oxidoreductase family protein [Bacillus cereus
           AH1134]
          Length = 979

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 7/92 (7%)

Query: 33  TINYPFE-KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
              YP+E K   S           Y     +CIAC  C  +C    +             
Sbjct: 123 HQKYPYEPKVDVSEVDMTHP---FYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERP 179

Query: 92  RTVR---YDIDMIKCIYCGLCQEACPVDAIVE 120
           R +     +I+   C+ CG C   CP +A++E
Sbjct: 180 RVIWDEGVNINDSSCVSCGQCVTICPCNALME 211



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 91  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|218904697|ref|YP_002452531.1| molybdopterin oxidoreductase family protein [Bacillus cereus AH820]
 gi|218540186|gb|ACK92584.1| molybdopterin oxidoreductase family protein [Bacillus cereus AH820]
          Length = 979

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+E          +     Y     +CIAC  C  +C    +             R
Sbjct: 123 HQKYPYE--PKVDASEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 180

Query: 93  TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120
            +     +I+   C+ CG C   CP +A++E
Sbjct: 181 VIWDEGVNINDSSCVSCGQCVTICPCNALME 211



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 91  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDASEVDMTHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|83746719|ref|ZP_00943768.1| Formate hydrogenlyase subunit 6 [Ralstonia solanacearum UW551]
 gi|83726672|gb|EAP73801.1| Formate hydrogenlyase subunit 6 [Ralstonia solanacearum UW551]
          Length = 719

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 9/74 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              RC  C  C + CP+QA+  ++               +    C+ CGLC+  CP DAI
Sbjct: 587 DRARCTLCMACVSACPSQALRDQAE---------QPVLSMIERNCVQCGLCETTCPEDAI 637

Query: 119 VEGPNFEFATETRQ 132
              P    +   RQ
Sbjct: 638 ALVPRLNLSAGARQ 651



 Score = 41.2 bits (95), Expect = 0.041,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 7/55 (12%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C+ C  +C A AIT +                +    C+ CG C  ACP  A+
Sbjct: 334 VGCEACVQVCSAAAITSQWKDGRGSVH-------VTPNLCVGCGACTTACPTGAL 381



 Score = 38.5 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 20/48 (41%)

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               A  +T   G       +   R  ID+ +C  C  C +ACP DAI
Sbjct: 179 WPVHAGELTQVGGWLGAFDVQWRSRNPIDLDRCTRCNACIDACPEDAI 226



 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 1/66 (1%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-IDMI 101
            S   R +         E  C+ C LCE  CP  AI +        G R+ V  +  +  
Sbjct: 602 PSQALRDQAEQPVLSMIERNCVQCGLCETTCPEDAIALVPRLNLSAGARQPVTLNATEPF 661

Query: 102 KCIYCG 107
            CI CG
Sbjct: 662 HCIRCG 667



 Score = 35.1 bits (79), Expect = 3.0,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 32/118 (27%), Gaps = 21/118 (17%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYP-----NGEERCIACKLCEAICPAQAITIESGP 84
                 +P   G  +       A             +RC  C  C   CP  AI      
Sbjct: 173 PPMARRWPVHAGELTQVGGWLGAFDVQWRSRNPIDLDRCTRCNACIDACPEDAID----- 227

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEAC-PVDAIVEGPNFEFATET-RQELYYDKER 140
                      Y ID+  C     C +AC    AI  G      T   R +L +D   
Sbjct: 228 ---------TLYQIDLDACRDHRDCVKACGEAMAIDFGRLDAPQTYAGRFDLIFDLND 276


>gi|239908169|ref|YP_002954910.1| iron-sulphur binding protein [Desulfovibrio magneticus RS-1]
 gi|239798035|dbj|BAH77024.1| iron-sulphur binding protein [Desulfovibrio magneticus RS-1]
          Length = 210

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 28/74 (37%), Gaps = 11/74 (14%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G  A+R      E C  C  C   CP  AI I +G              I+   C+ CG 
Sbjct: 79  GLIAVREASVDPEACHGCGACAEACPDAAIQITAGKAV-----------INQGTCLGCGA 127

Query: 109 CQEACPVDAIVEGP 122
           C   CP  AI  GP
Sbjct: 128 CARVCPSRAIASGP 141


>gi|254509887|ref|ZP_05121954.1| iron-sulfur cluster-binding protein [Rhodobacteraceae bacterium
           KLH11]
 gi|221533598|gb|EEE36586.1| iron-sulfur cluster-binding protein [Rhodobacteraceae bacterium
           KLH11]
          Length = 631

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 9/82 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C  C  C ++CP+ A+                + +     C+ CG+C+  CP  AI
Sbjct: 479 DAGSCTLCLSCVSLCPSGALIDNPDK---------PQLNFQQDACLQCGICRTICPEQAI 529

Query: 119 VEGPNFEFATETRQELYYDKER 140
              P  + +     +   ++E 
Sbjct: 530 ELVPQLDLSDRALSQQVLNEEE 551



 Score = 37.4 bits (85), Expect = 0.69,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 19/59 (32%), Gaps = 11/59 (18%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
             C  C  ICP  AIT                  ID + C  CG C   CP  AI    
Sbjct: 257 TGCSNCLDICPTGAITPAGD-----------HVAIDPMICAGCGECSALCPSTAITYED 304


>gi|220927475|ref|YP_002504384.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Clostridium cellulolyticum H10]
 gi|219997803|gb|ACL74404.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Clostridium cellulolyticum H10]
          Length = 1183

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 33/110 (30%), Gaps = 18/110 (16%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES--------------- 82
           FE G+++   RG   L    +    C+ C  C  +C    I                   
Sbjct: 673 FEMGASAYEKRGTAVLVPEWD-ASLCLQCNSCAFVCSHATIRPFMLSEDEIKAAPSNIKL 731

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130
                  +       +  + C+ CG C   CPV   AI   P    A E 
Sbjct: 732 ADTRPKASEYKFTMSVSPLDCMGCGECITVCPVKEKAIKMVPQESQAQEQ 781


>gi|126436658|ref|YP_001072349.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Mycobacterium sp. JLS]
 gi|126236458|gb|ABN99858.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Mycobacterium sp. JLS]
          Length = 548

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 24/63 (38%), Gaps = 3/63 (4%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C     C  +CP   I          GT       ID   CI CG C E CPVDAI  
Sbjct: 7   QNCCKDASCVPVCPVDCIRPAGEAGQFVGT---EMLYIDPETCIDCGACLEECPVDAIYY 63

Query: 121 GPN 123
             +
Sbjct: 64  DED 66


>gi|319936568|ref|ZP_08010982.1| hydrogenase [Coprobacillus sp. 29_1]
 gi|319808366|gb|EFW04926.1| hydrogenase [Coprobacillus sp. 29_1]
          Length = 457

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 9/77 (11%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              EE+CI C  C+ IC                   ++   +D   CI CG C   CPV 
Sbjct: 21  QRDEEKCIKCGQCKNICQD---------YIGVHGTYSLEDTLDRAVCINCGQCANVCPVS 71

Query: 117 AIVEGPNFEFATETRQE 133
           +I E   + F  E  + 
Sbjct: 72  SIHETYEYPFIQEDMKN 88


>gi|296504078|ref|YP_003665778.1| formate dehydrogenase subunit alpha [Bacillus thuringiensis BMB171]
 gi|296325130|gb|ADH08058.1| formate dehydrogenase alpha chain [Bacillus thuringiensis BMB171]
          Length = 979

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+E          +     Y     +CIAC  C  +C    +             R
Sbjct: 123 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 180

Query: 93  TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120
            +     +I+   C+ CG C   CP +A++E
Sbjct: 181 VIWDEGVNINDSSCVSCGQCVTICPCNALME 211



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 91  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|228922280|ref|ZP_04085587.1| formate dehydrogenase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228837335|gb|EEM82669.1| formate dehydrogenase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 975

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+E          +     Y     +CIAC  C  +C    +             R
Sbjct: 119 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 176

Query: 93  TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120
            +     +I+   C+ CG C   CP +A++E
Sbjct: 177 VIWDEGVNINDSSCVSCGQCVTICPCNALME 207



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 87  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 146

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 147 CIACGQCVEVC 157


>gi|228953840|ref|ZP_04115879.1| formate dehydrogenase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228805808|gb|EEM52388.1| formate dehydrogenase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 975

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 7/92 (7%)

Query: 33  TINYPFE-KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
              YP+E K   S           Y     +CIAC  C  +C    +             
Sbjct: 119 HQKYPYEPKVDVSEVDMTHP---FYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERP 175

Query: 92  RTVR---YDIDMIKCIYCGLCQEACPVDAIVE 120
           R +     +I+   C+ CG C   CP +A++E
Sbjct: 176 RVIWDKGVNINDSSCVSCGQCVTICPCNALME 207



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 87  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 146

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 147 CIACGQCVEVC 157


>gi|228940656|ref|ZP_04103221.1| formate dehydrogenase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228973575|ref|ZP_04134158.1| formate dehydrogenase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228786162|gb|EEM34158.1| formate dehydrogenase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228819035|gb|EEM65095.1| formate dehydrogenase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|326941288|gb|AEA17184.1| formate dehydrogenase alpha chain [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 979

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+E          +     Y     +CIAC  C  +C    +             R
Sbjct: 123 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 180

Query: 93  TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120
            +     +I+   C+ CG C   CP +A++E
Sbjct: 181 VIWDEGVNINDSSCVSCGQCVTICPCNALME 211



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 91  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|228980133|ref|ZP_04140448.1| formate dehydrogenase [Bacillus thuringiensis Bt407]
 gi|228779615|gb|EEM27867.1| formate dehydrogenase [Bacillus thuringiensis Bt407]
          Length = 975

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+E          +     Y     +CIAC  C  +C    +             R
Sbjct: 119 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 176

Query: 93  TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120
            +     +I+   C+ CG C   CP +A++E
Sbjct: 177 VIWDEGVNINDSSCVSCGQCVTICPCNALME 207



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 87  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 146

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 147 CIACGQCVEVC 157


>gi|229080777|ref|ZP_04213295.1| formate dehydrogenase [Bacillus cereus Rock4-2]
 gi|228702511|gb|EEL54979.1| formate dehydrogenase [Bacillus cereus Rock4-2]
          Length = 975

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+E          +     Y     +CIAC  C  +C    +             R
Sbjct: 119 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 176

Query: 93  TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120
            +     +I+   C+ CG C   CP +A++E
Sbjct: 177 VIWDEGVNINDSSCVSCGQCVTICPCNALME 207



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 87  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 146

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 147 CIACGQCVEVC 157


>gi|229047252|ref|ZP_04192852.1| formate dehydrogenase [Bacillus cereus AH676]
 gi|229128844|ref|ZP_04257820.1| formate dehydrogenase [Bacillus cereus BDRD-Cer4]
 gi|229146139|ref|ZP_04274515.1| formate dehydrogenase [Bacillus cereus BDRD-ST24]
 gi|228637350|gb|EEK93804.1| formate dehydrogenase [Bacillus cereus BDRD-ST24]
 gi|228654549|gb|EEL10411.1| formate dehydrogenase [Bacillus cereus BDRD-Cer4]
 gi|228724119|gb|EEL75464.1| formate dehydrogenase [Bacillus cereus AH676]
          Length = 975

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+E          +     Y     +CIAC  C  +C    +             R
Sbjct: 119 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 176

Query: 93  TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120
            +     +I+   C+ CG C   CP +A++E
Sbjct: 177 VIWDEGVNINDSSCVSCGQCVTICPCNALME 207



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 87  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 146

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 147 CIACGQCVEVC 157


>gi|229179856|ref|ZP_04307202.1| formate dehydrogenase [Bacillus cereus 172560W]
 gi|228603537|gb|EEK61012.1| formate dehydrogenase [Bacillus cereus 172560W]
          Length = 975

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+E          +     Y     +CIAC  C  +C    +             R
Sbjct: 119 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 176

Query: 93  TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120
            +     +I+   C+ CG C   CP +A++E
Sbjct: 177 VIWDKGVNINDSSCVSCGQCVTICPCNALME 207



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 87  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 146

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 147 CIACGQCVEVC 157


>gi|229191659|ref|ZP_04318638.1| formate dehydrogenase [Bacillus cereus ATCC 10876]
 gi|228591821|gb|EEK49661.1| formate dehydrogenase [Bacillus cereus ATCC 10876]
          Length = 975

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 7/92 (7%)

Query: 33  TINYPFE-KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
              YP+E K   S           Y     +CIAC  C  +C    +             
Sbjct: 119 HQKYPYEPKVDVSEVDMTHP---FYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERP 175

Query: 92  RTVR---YDIDMIKCIYCGLCQEACPVDAIVE 120
           R +     +I+   C+ CG C   CP +A++E
Sbjct: 176 RVIWDEGVNINDSSCVSCGQCVTICPCNALME 207



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 87  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 146

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 147 CIACGQCVEVC 157


>gi|255279826|ref|ZP_05344381.1| Fe-hydrogenase large subunit family protein [Bryantella
           formatexigens DSM 14469]
 gi|255269599|gb|EET62804.1| Fe-hydrogenase large subunit family protein [Bryantella
           formatexigens DSM 14469]
          Length = 507

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 6/66 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112
            +++CI C  C  +C   AI ++  P         +  D      ID  KC+ CG+C   
Sbjct: 150 DQDKCIKCGRCADVCSYHAIIVQERPCAAACGMDAIHTDANGKADIDYEKCVSCGMCLVN 209

Query: 113 CPVDAI 118
           CP  AI
Sbjct: 210 CPFGAI 215



 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 19/63 (30%), Gaps = 7/63 (11%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGT-------RRTVRYDIDMIKCIYCGLCQEACPV 115
           C AC               + P             R   R  ID  KCI CG C + C  
Sbjct: 107 CNACHEKRVFVTDGCRGCLAHPCVEVCPKGAVTLERTNGRSVIDQDKCIKCGRCADVCSY 166

Query: 116 DAI 118
            AI
Sbjct: 167 HAI 169


>gi|206975529|ref|ZP_03236442.1| molybdopterin oxidoreductase family protein [Bacillus cereus
           H3081.97]
 gi|206746431|gb|EDZ57825.1| molybdopterin oxidoreductase family protein [Bacillus cereus
           H3081.97]
          Length = 979

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+E          +     Y     +CIAC  C  +C    +             R
Sbjct: 123 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 180

Query: 93  TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120
            +     +I+   C+ CG C   CP +A++E
Sbjct: 181 VIWDEGVNINDSSCVSCGQCVTICPCNALME 211



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 91  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|218235645|ref|YP_002368385.1| molybdopterin oxidoreductase family protein [Bacillus cereus B4264]
 gi|218163602|gb|ACK63594.1| molybdopterin oxidoreductase family protein [Bacillus cereus B4264]
          Length = 979

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+E          +     Y     +CIAC  C  +C    +             R
Sbjct: 123 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 180

Query: 93  TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120
            +     +I+   C+ CG C   CP +A++E
Sbjct: 181 VIWDEGVNINDSSCVSCGQCVTICPCNALME 211



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 91  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|161524127|ref|YP_001579139.1| ferredoxin [Burkholderia multivorans ATCC 17616]
 gi|189351116|ref|YP_001946744.1| ferredoxin [Burkholderia multivorans ATCC 17616]
 gi|160341556|gb|ABX14642.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           multivorans ATCC 17616]
 gi|189335138|dbj|BAG44208.1| electron transport complex protein [Burkholderia multivorans ATCC
           17616]
          Length = 320

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 22/66 (33%), Gaps = 10/66 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C LC   CP  AI                 + I    C  C LC   CPVD
Sbjct: 113 FIDENLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVASLCTGCDLCVPPCPVD 162

Query: 117 AIVEGP 122
            I   P
Sbjct: 163 CIAMVP 168


>gi|114763310|ref|ZP_01442734.1| iron-sulfur cluster-binding protein [Pelagibaca bermudensis
           HTCC2601]
 gi|114544108|gb|EAU47118.1| iron-sulfur cluster-binding protein [Roseovarius sp. HTCC2601]
          Length = 638

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 37/119 (31%), Gaps = 14/119 (11%)

Query: 23  CLRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
             R   +      +P  E  +          L      ++ C  C  C ++CP+ A+   
Sbjct: 455 TRRQITRQAARALHPETESLALPEGAPYGAVLV----DQDACTLCLSCVSLCPSGALGDN 510

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140
                        +       C+ CGLC   CP DAI   P      E   +   ++E 
Sbjct: 511 PD---------LPQLRFQEDACLQCGLCANVCPEDAIAYEPRLLLTDEAFDQKVLNEEE 560



 Score = 39.3 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 11/55 (20%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C  C  +CP  AI+ +                +D + C  CG C  ACP  AI
Sbjct: 267 VGCTSCLDLCPTGAISPDGD-----------HVSVDPMICAGCGACSSACPSGAI 310


>gi|52141962|ref|YP_084867.1| formate dehydrogenase, alpha subunit [Bacillus cereus E33L]
 gi|51975431|gb|AAU16981.1| formate dehydrogenase, alpha subunit [Bacillus cereus E33L]
          Length = 979

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 7/92 (7%)

Query: 33  TINYPFE-KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
              YP+E K   S           Y     +CIAC  C  +C    +             
Sbjct: 123 HQKYPYEPKVDVSEVDMTHP---FYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERP 179

Query: 92  RTVR---YDIDMIKCIYCGLCQEACPVDAIVE 120
           R +     +I+   C+ CG C   CP +A++E
Sbjct: 180 RVIWDEGVNINDSSCVSCGQCVTICPCNALME 211



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 91  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|330995206|ref|ZP_08319119.1| pyruvate synthase [Paraprevotella xylaniphila YIT 11841]
 gi|329576348|gb|EGG57862.1| pyruvate synthase [Paraprevotella xylaniphila YIT 11841]
          Length = 1182

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 47/146 (32%), Gaps = 36/146 (24%)

Query: 28  FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------- 80
           FK      +P  +G+ +   RG  A     N  + CI C  C  +CP  AI         
Sbjct: 658 FKGIEDGTWP--QGTAAYEKRGVAAFVPTWN-PDNCIQCNKCAYVCPHAAIRPFVLDAEE 714

Query: 81  --------ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP--------------VDAI 118
                                 R  + ++ C+ CG C + CP                 +
Sbjct: 715 MKGFNAPVIEMKAPAAMKGMNFRIQVSVMDCLGCGNCADVCPGNPKLGKALTMVPLEQEL 774

Query: 119 VEGPNFEFATETRQELYYDKERLLNN 144
            E PN+E+  +        K+ L++ 
Sbjct: 775 DEAPNWEYCVKN----VKSKQDLVDI 796


>gi|261823320|ref|YP_003261426.1| glycyl-radical enzyme activating protein family [Pectobacterium
           wasabiae WPP163]
 gi|261607333|gb|ACX89819.1| glycyl-radical enzyme activating protein family [Pectobacterium
           wasabiae WPP163]
          Length = 305

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 27/77 (35%), Gaps = 15/77 (19%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103
               R +  L    N    CI C  C  +C   A++  +             + ID  +C
Sbjct: 45  PESQRPQPELIYKKND---CIRCGKCVDVCKQHALSPNN------------PFFIDRERC 89

Query: 104 IYCGLCQEACPVDAIVE 120
           I CG C   CP  A+  
Sbjct: 90  IQCGDCTHVCPTQALEM 106


>gi|228959758|ref|ZP_04121433.1| formate dehydrogenase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228799888|gb|EEM46830.1| formate dehydrogenase [Bacillus thuringiensis serovar pakistani
           str. T13001]
          Length = 975

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+E          +     Y     +CIAC  C  +C    +             R
Sbjct: 119 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 176

Query: 93  TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120
            +     +I+   C+ CG C   CP +A++E
Sbjct: 177 VIWDEGVNINDSSCVSCGQCVTICPCNALME 207



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 87  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 146

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 147 CIACGQCVEVC 157


>gi|229174233|ref|ZP_04301767.1| formate dehydrogenase [Bacillus cereus MM3]
 gi|228609251|gb|EEK66539.1| formate dehydrogenase [Bacillus cereus MM3]
          Length = 975

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+E          +     Y     +CIAC  C  +C    +             R
Sbjct: 119 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 176

Query: 93  TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120
            +     +I+   C+ CG C   CP +A++E
Sbjct: 177 VIWDEGVNINDSSCVSCGQCVTICPCNALME 207



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 87  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 146

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 147 CIACGQCVEVC 157


>gi|217960973|ref|YP_002339541.1| molybdopterin oxidoreductase family protein [Bacillus cereus AH187]
 gi|229140185|ref|ZP_04268743.1| formate dehydrogenase [Bacillus cereus BDRD-ST26]
 gi|217066127|gb|ACJ80377.1| molybdopterin oxidoreductase family protein [Bacillus cereus AH187]
 gi|228643271|gb|EEK99544.1| formate dehydrogenase [Bacillus cereus BDRD-ST26]
          Length = 979

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+E          +     Y     +CIAC  C  +C    +             R
Sbjct: 123 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 180

Query: 93  TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120
            +     +I+   C+ CG C   CP +A++E
Sbjct: 181 VIWDEGVNINDSSCVSCGQCVTICPCNALME 211



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 91  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|330992501|ref|ZP_08316449.1| hypothetical protein SXCC_02408 [Gluconacetobacter sp. SXCC-1]
 gi|329760700|gb|EGG77196.1| hypothetical protein SXCC_02408 [Gluconacetobacter sp. SXCC-1]
          Length = 424

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 10/85 (11%)

Query: 45  PRFRGEHALRRYPN-----GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
            RF   + L    N      ++ CI C LC   C   +    +  R          Y++ 
Sbjct: 322 ERFVPWNQLNMKFNTIAKIDQDACIKCGLCHIACEDTSHQAIAKTRVDG----ERHYEVI 377

Query: 100 MIKCIYCGLCQEACPV-DAIVEGPN 123
             +C+ C LC   CPV D I   P 
Sbjct: 378 DAECVGCNLCAHVCPVSDCITMQPQ 402


>gi|323697908|ref|ZP_08109820.1| Glutamate synthase (NADPH) [Desulfovibrio sp. ND132]
 gi|323457840|gb|EGB13705.1| Glutamate synthase (NADPH) [Desulfovibrio desulfuricans ND132]
          Length = 509

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 24/78 (30%), Gaps = 9/78 (11%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                   +         E CI CK+C   C  +A   +   +             D  K
Sbjct: 2   LFQPINKNYHEFCIERDPELCINCKVCVRQCSYEAHYWDEARQKVM---------HDNSK 52

Query: 103 CIYCGLCQEACPVDAIVE 120
           CI C  C+  CP  A+  
Sbjct: 53  CIGCHRCEALCPTAALNI 70


>gi|229071070|ref|ZP_04204296.1| formate dehydrogenase [Bacillus cereus F65185]
 gi|228712010|gb|EEL63959.1| formate dehydrogenase [Bacillus cereus F65185]
          Length = 975

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+E          +     Y     +CIAC  C  +C    +             R
Sbjct: 119 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 176

Query: 93  TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120
            +     +I+   C+ CG C   CP +A++E
Sbjct: 177 VIWDEGVNINDSSCVSCGQCVTICPCNALME 207



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 87  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 146

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 147 CIACGQCVEVC 157


>gi|229197682|ref|ZP_04324402.1| formate dehydrogenase [Bacillus cereus m1293]
 gi|228585759|gb|EEK43857.1| formate dehydrogenase [Bacillus cereus m1293]
          Length = 975

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+E          +     Y     +CIAC  C  +C    +             R
Sbjct: 119 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 176

Query: 93  TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120
            +     +I+   C+ CG C   CP +A++E
Sbjct: 177 VIWDEGVNINDSSCVSCGQCVTICPCNALME 207



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 87  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 146

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 147 CIACGQCVEVC 157


>gi|254520090|ref|ZP_05132146.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
 gi|226913839|gb|EEH99040.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
          Length = 634

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 10/65 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               + CI C  C   CP  AI            +   ++ I++ KCI CGLC EACP  
Sbjct: 574 YEVTDSCIGCTKCLRACPVLAIKG----------KIREKHIINIDKCIRCGLCYEACPTK 623

Query: 117 AIVEG 121
           AI++ 
Sbjct: 624 AIIKT 628



 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 8/79 (10%)

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
               +        +C  G  + +        CI C  C  ACPV AI          + R
Sbjct: 549 FFNNEYKEHVIDKKCTAGVCKGLVKYEVTDSCIGCTKCLRACPVLAIK--------GKIR 600

Query: 132 QELYYDKERLLNNGDRWES 150
           ++   + ++ +  G  +E+
Sbjct: 601 EKHIINIDKCIRCGLCYEA 619


>gi|164686661|ref|ZP_02210689.1| hypothetical protein CLOBAR_00256 [Clostridium bartlettii DSM
           16795]
 gi|164604051|gb|EDQ97516.1| hypothetical protein CLOBAR_00256 [Clostridium bartlettii DSM
           16795]
          Length = 622

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 10/68 (14%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           AL+ +    ++C  C  C   CP  AIT E              + ID  KCI CG C E
Sbjct: 563 ALKTFKIDPDKCKGCTKCARNCPVGAITGEKKEA----------HVIDTTKCIKCGACME 612

Query: 112 ACPVDAIV 119
            C  DAI 
Sbjct: 613 GCKFDAIY 620



 Score = 38.5 bits (88), Expect = 0.32,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 20/71 (28%), Gaps = 8/71 (11%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           E         I  G            + ID  KC  C  C   CPV AI          E
Sbjct: 541 ELFRHEYEEHIVDGKCRAHVCSALKTFKIDPDKCKGCTKCARNCPVGAI--------TGE 592

Query: 130 TRQELYYDKER 140
            ++    D  +
Sbjct: 593 KKEAHVIDTTK 603


>gi|144899879|emb|CAM76743.1| NADPH-dependent glutamate synthase beta chain and related
           oxidoreductases [Magnetospirillum gryphiswaldense MSR-1]
          Length = 567

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 5/60 (8%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C+AC  C  +CP  A+   S             Y  D   C  CGLC + CP   I   
Sbjct: 510 NCLACDNCWTLCPDNAVLKTSEMAKDG-----SHYLFDYEYCKGCGLCAKECPCGFISMQ 564


>gi|327398403|ref|YP_004339272.1| NADH dehydrogenase (quinone) [Hippea maritima DSM 10411]
 gi|327181032|gb|AEA33213.1| NADH dehydrogenase (quinone) [Hippea maritima DSM 10411]
          Length = 785

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 2/83 (2%)

Query: 38  FEKGSTSPRFRG-EHALRRYPNGEERCIACKLCEAICPAQAITIE-SGPRCHDGTRRTVR 95
            E    S   +   H  R   +    CIAC+ C  IC         +  +   G R    
Sbjct: 128 EEADPLSVPNKSIHHEWRIIHHDANLCIACRRCVTICDKVVNFGILAMAKKEWGGREVDT 187

Query: 96  YDIDMIKCIYCGLCQEACPVDAI 118
            D   ++C +CG C   CP  A+
Sbjct: 188 KDGKPLECEFCGQCVSICPTGAM 210


>gi|324327470|gb|ADY22730.1| formate dehydrogenase, alpha subunit [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 979

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+E          +     Y     +CIAC  C  +C    +             R
Sbjct: 123 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 180

Query: 93  TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120
            +     +I+   C+ CG C   CP +A++E
Sbjct: 181 VIWDEGVNINDSSCVSCGQCVTICPCNALME 211



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 91  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|229151767|ref|ZP_04279967.1| formate dehydrogenase [Bacillus cereus m1550]
 gi|228631694|gb|EEK88323.1| formate dehydrogenase [Bacillus cereus m1550]
          Length = 975

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+E          +     Y     +CIAC  C  +C    +             R
Sbjct: 119 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 176

Query: 93  TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120
            +     +I+   C+ CG C   CP +A++E
Sbjct: 177 VIWDEGVNINDSSCVSCGQCVTICPCNALME 207



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 87  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 146

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 147 CIACGQCVEVC 157


>gi|30021674|ref|NP_833305.1| formate dehydrogenase alpha chain [Bacillus cereus ATCC 14579]
 gi|29897229|gb|AAP10506.1| Formate dehydrogenase alpha chain [Bacillus cereus ATCC 14579]
          Length = 979

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+E          +     Y     +CIAC  C  +C    +             R
Sbjct: 123 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 180

Query: 93  TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120
            +     +I+   C+ CG C   CP +A++E
Sbjct: 181 VIWDEGVNINDSSCVSCGQCVTICPCNALME 211



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 91  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|300703372|ref|YP_003744974.1| 4fe-4S ferredoxin [Ralstonia solanacearum CFBP2957]
 gi|299071035|emb|CBJ42344.1| putative 4Fe-4S ferredoxin [Ralstonia solanacearum CFBP2957]
          Length = 719

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 9/74 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              RC  C  C + CP+QA+  ++               +    C+ CGLC+  CP DAI
Sbjct: 587 DRARCTLCMACVSACPSQALRDQAE---------QPVLSMIERNCVQCGLCETTCPEDAI 637

Query: 119 VEGPNFEFATETRQ 132
              P    +   RQ
Sbjct: 638 ALVPRLNLSAGARQ 651



 Score = 40.5 bits (93), Expect = 0.090,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 7/55 (12%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C+ C  +C A AIT +                +    C+ CG C  ACP  A+
Sbjct: 334 VGCEACVQVCSAAAITSQWQDGRGSVH-------VAPNLCVGCGACTMACPTGAL 381



 Score = 37.4 bits (85), Expect = 0.60,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 18/48 (37%)

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                  +    G       +   R  ID+ +C  C  C +ACP DAI
Sbjct: 179 WPVHVGELAQVGGWLGAFDVQWRSRNPIDLDRCTRCNACIDACPEDAI 226



 Score = 35.5 bits (80), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 1/66 (1%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-IDMI 101
            S   R +         E  C+ C LCE  CP  AI +        G R+ V  +  +  
Sbjct: 602 PSQALRDQAEQPVLSMIERNCVQCGLCETTCPEDAIALVPRLNLSAGARQPVTLNATEPF 661

Query: 102 KCIYCG 107
            CI CG
Sbjct: 662 HCIRCG 667


>gi|291550262|emb|CBL26524.1| Iron only hydrogenase large subunit, C-terminal domain
           [Ruminococcus torques L2-14]
          Length = 434

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 7/78 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQ 110
              +++CI C  C+++CP  AI  +  P             +  R  ID  KC+ CG+C 
Sbjct: 79  FIDQDKCIKCGKCKSVCPYDAIAKKERPCKKACGVNAITSDKLGRAYIDADKCVSCGMCM 138

Query: 111 EACPVDAI-VEGPNFEFA 127
            +CP  AI  +   F+ A
Sbjct: 139 VSCPFGAISDKSQIFQLA 156



 Score = 41.2 bits (95), Expect = 0.053,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 13/64 (20%)

Query: 57  PNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 C  C    C+ +CP  AI++ +G              ID  KCI CG C+  CP
Sbjct: 48  YEVSNVCKGCLAHPCQEVCPRGAISMVNGKSF-----------IDQDKCIKCGKCKSVCP 96

Query: 115 VDAI 118
            DAI
Sbjct: 97  YDAI 100


>gi|255026848|ref|ZP_05298834.1| hypothetical protein LmonocytFSL_11906 [Listeria monocytogenes FSL
           J2-003]
          Length = 597

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 3/85 (3%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E+      +  + +   Y    ++CI C  C   C    +             R +  D 
Sbjct: 124 ERPYREKGYLNDFSHPFYRYDPDQCILCGRCVEACQQVQVNETLSIDWERSQPRVIWDDD 183

Query: 99  DMIK---CIYCGLCQEACPVDAIVE 120
                  C+ CGLC   CP +A++E
Sbjct: 184 RPANLSSCVSCGLCATVCPCNALME 208



 Score = 38.5 bits (88), Expect = 0.29,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 9/69 (13%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCI 104
           R   N    C  C      C+     + + +E   R +             Y  D  +CI
Sbjct: 90  RILENHLLYCTVCDNNNGNCKVHNTTELLGVEKQERPYREKGYLNDFSHPFYRYDPDQCI 149

Query: 105 YCGLCQEAC 113
            CG C EAC
Sbjct: 150 LCGRCVEAC 158


>gi|167756750|ref|ZP_02428877.1| hypothetical protein CLORAM_02297 [Clostridium ramosum DSM 1402]
 gi|237734469|ref|ZP_04564950.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|167702925|gb|EDS17504.1| hypothetical protein CLORAM_02297 [Clostridium ramosum DSM 1402]
 gi|229382289|gb|EEO32380.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 263

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/105 (32%), Positives = 42/105 (40%), Gaps = 12/105 (11%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +   A   CLR       T+  P++K +       E ALR   N    CI C +C   C
Sbjct: 168 PDLCQACGKCLRVCPNNVITL-IPYQKQAVVKCNSNEPALRARKNCAVSCIGCGICARNC 226

Query: 74  PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           P  AI IE+               ID  KC  CGLC+E CP   I
Sbjct: 227 PNNAIIIENSLA-----------RIDYTKCTNCGLCKEKCPRKCI 260



 Score = 37.8 bits (86), Expect = 0.56,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 5/69 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK-----CIYCGLCQEAC 113
             + C AC  C  +CP   IT+    +       +    +   K     CI CG+C   C
Sbjct: 167 NPDLCQACGKCLRVCPNNVITLIPYQKQAVVKCNSNEPALRARKNCAVSCIGCGICARNC 226

Query: 114 PVDAIVEGP 122
           P +AI+   
Sbjct: 227 PNNAIIIEN 235


>gi|150392337|ref|YP_001322386.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing
           protein [Alkaliphilus metalliredigens QYMF]
 gi|149952199|gb|ABR50727.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Alkaliphilus metalliredigens QYMF]
          Length = 1171

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/129 (23%), Positives = 44/129 (34%), Gaps = 34/129 (26%)

Query: 57  PNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR-----------TVRYDIDM 100
               E+CI C  C  +CP  AI       +   +  +G +              R  +  
Sbjct: 683 EWQMEKCIQCNQCAYVCPHAAIRPFLVDEKEAAQAPEGFKTLKAMGKEFNGLQYRLQVST 742

Query: 101 IKCIYCGLCQEACPVD---AIVEGP----------NFEFATETRQELYYDKERLLNNGDR 147
           + C  CG C + CP     AI   P          N+E+AT        DK  L N G  
Sbjct: 743 LDCTGCGNCVDICPAPKGKAIEMKPVEPQVEAQKENWEYATT-----LTDKSELTNIGTV 797

Query: 148 WESEIVRNI 156
             S+  + +
Sbjct: 798 KGSQFAQPL 806


>gi|294495829|ref|YP_003542322.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanohalophilus mahii DSM 5219]
 gi|292666828|gb|ADE36677.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanohalophilus mahii DSM 5219]
          Length = 369

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 29/71 (40%), Gaps = 12/71 (16%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 E C  C  C  +CP  A+ I +               ID  KCI CG C   CP
Sbjct: 188 HPEIDAEICNGCATCVEVCPCDAMEINNDNIS----------TIDDDKCIGCGECMTVCP 237

Query: 115 VDAIVEGPNFE 125
           V+AI  G N+E
Sbjct: 238 VEAI--GFNYE 246



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 15/37 (40%)

Query: 87  HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                + +  +ID   C  C  C E CP DA+    +
Sbjct: 180 KMEQHKGLHPEIDAEICNGCATCVEVCPCDAMEINND 216


>gi|73540750|ref|YP_295270.1| ferredoxin [Ralstonia eutropha JMP134]
 gi|72118163|gb|AAZ60426.1| Electron transport complex, RnfABCDGE type, B subunit [Ralstonia
           eutropha JMP134]
          Length = 248

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 23/64 (35%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C LC   CP  AI   +             + I    C  C LC   CPVD I
Sbjct: 83  DESLCIGCTLCIQACPVDAIAGAAKQ----------MHTIIPELCTGCDLCVPPCPVDCI 132

Query: 119 VEGP 122
              P
Sbjct: 133 DMVP 136



 Score = 37.8 bits (86), Expect = 0.52,   Method: Composition-based stats.
 Identities = 14/22 (63%), Positives = 15/22 (68%)

Query: 97  DIDMIKCIYCGLCQEACPVDAI 118
            ID   CI C LC +ACPVDAI
Sbjct: 81  RIDESLCIGCTLCIQACPVDAI 102


>gi|325570424|ref|ZP_08146201.1| electron transport complex protein RnfC [Enterococcus casseliflavus
           ATCC 12755]
 gi|325156634|gb|EGC68811.1| electron transport complex protein RnfC [Enterococcus casseliflavus
           ATCC 12755]
          Length = 445

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 36/109 (33%), Gaps = 10/109 (9%)

Query: 13  LKEFVGA-------FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
           L +F G          L      K+  T+  P  KG  S      +    +   E  CI 
Sbjct: 313 LIDFAGGFQGAPSKLILGGPMMGKSVKTLKVPVTKG--SNGIVVFNEETDWLYAENPCIR 370

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           C  C   CP + + +E       G       ++    CI CG C   CP
Sbjct: 371 CNKCVEACPMRLMPMEIDQFYRAGD-YQKCEELLAEACINCGACTFVCP 418



 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 4/41 (9%)

Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLN 143
           CI C  C EACP+  +      E     R   Y   E LL 
Sbjct: 368 CIRCNKCVEACPMRLMPM----EIDQFYRAGDYQKCEELLA 404


>gi|260430223|ref|ZP_05784197.1| 4Fe-4S ferredoxin, iron-sulfur binding [Citreicella sp. SE45]
 gi|260418695|gb|EEX11951.1| 4Fe-4S ferredoxin, iron-sulfur binding [Citreicella sp. SE45]
          Length = 461

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 33/119 (27%), Gaps = 14/119 (11%)

Query: 23  CLRYFFKAKTTINYPFE-KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
             R   +      +P                L         C  C  C ++CP+ A+   
Sbjct: 277 TRRQISRQAARALHPEGGTLPLPAGAPYGAVLV----DTGACTLCLSCVSLCPSGALGDN 332

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140
                        +       C+ CG+C   CP DAI   P F        +   ++E 
Sbjct: 333 PD---------LPQLRFQEDACLQCGICATVCPEDAITLDPRFNLNESALSQEVLNEEE 382



 Score = 38.9 bits (89), Expect = 0.24,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 11/55 (20%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             C  C  +CP  AI  +                ID + C  CG C  ACP  A+
Sbjct: 89  TGCTRCLDLCPTGAILPDGD-----------HVTIDPMICAGCGACSAACPSGAV 132


>gi|229826121|ref|ZP_04452190.1| hypothetical protein GCWU000182_01486 [Abiotrophia defectiva ATCC
           49176]
 gi|229789694|gb|EEP25808.1| hypothetical protein GCWU000182_01486 [Abiotrophia defectiva ATCC
           49176]
          Length = 507

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQEA 112
            ++ CI C  C  +CP  A+ I+  P                + DID  KC+ CG C   
Sbjct: 150 DQDVCIKCGKCAEVCPYHAVIIQERPCAAACGMDAIHSDVHGKADIDYEKCVSCGQCLVN 209

Query: 113 CPVDAI 118
           CP  AI
Sbjct: 210 CPFGAI 215



 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 20/66 (30%), Gaps = 7/66 (10%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-------IDMIKCIYCGLCQEACPV 115
           C  C               + P      +  V  D       ID   CI CG C E CP 
Sbjct: 107 CNGCTEKRVFVTDGCQGCLAHPCVEVCPKTCVSLDRTNGRSKIDQDVCIKCGKCAEVCPY 166

Query: 116 DAIVEG 121
            A++  
Sbjct: 167 HAVIIQ 172


>gi|160942428|ref|ZP_02089735.1| hypothetical protein CLOBOL_07312 [Clostridium bolteae ATCC
           BAA-613]
 gi|158434680|gb|EDP12447.1| hypothetical protein CLOBOL_07312 [Clostridium bolteae ATCC
           BAA-613]
          Length = 624

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 10/69 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           ++ Y   EE C  C  C   CPA AI  E              + I   +CI CG C EA
Sbjct: 565 MKTYIIDEETCRGCSKCAKGCPAGAIAGELK----------HVFTIRQQQCIKCGACAEA 614

Query: 113 CPVDAIVEG 121
           CP  A+   
Sbjct: 615 CPFGAVHIQ 623


>gi|90417026|ref|ZP_01224955.1| electron transport complex protein RnfC [marine gamma
           proteobacterium HTCC2207]
 gi|90331373|gb|EAS46617.1| electron transport complex protein RnfC [marine gamma
           proteobacterium HTCC2207]
          Length = 596

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/122 (17%), Positives = 33/122 (27%), Gaps = 16/122 (13%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
           +A        + CI C +C   CP   +  +                 ++  CI CG C 
Sbjct: 358 YAEIPDDEPAQPCIRCGMCAEACPVS-LLPQQLFWYAQAQEHDRLEAHNLFDCIECGACS 416

Query: 111 EACPVDAIVEGPNFEFA--------------TETRQELYYDKERLLNNGDRWESEIVRNI 156
             CP   I     +  A                 R    + KER+       E++     
Sbjct: 417 YVCP-SNIPLVQYYRAAKGEIRQAREEKVKSDHARDRFEFHKERIEQAEREKEAKRAARR 475

Query: 157 VT 158
             
Sbjct: 476 EA 477


>gi|92114035|ref|YP_573963.1| 4Fe-4S ferredoxin, iron-sulfur binding [Chromohalobacter salexigens
           DSM 3043]
 gi|91797125|gb|ABE59264.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Chromohalobacter
           salexigens DSM 3043]
          Length = 552

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 9/73 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + C  C  C A+CP QA++            ++   +     C+ CGLC+ ACP   I
Sbjct: 416 DTDNCTLCMACVAVCPTQALSSPG---------QSPALNFQESACVQCGLCETACPEQVI 466

Query: 119 VEGPNFEFATETR 131
              P F  A E R
Sbjct: 467 ALHPGFMAAPEPR 479



 Score = 41.2 bits (95), Expect = 0.053,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 37/105 (35%), Gaps = 26/105 (24%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           C  C  +CPA AI+                  ID  +C   G C  ACP  AI     + 
Sbjct: 193 CTRCLDVCPADAISSVKQEIV-----------IDPFRCHGAGSCTSACPTGAIR----YA 237

Query: 126 FATETRQELYYDKERLL-----NNGD----RWESEIVRNIVTDSP 161
             T  R + Y    RLL       GD    R+  +  +    D+P
Sbjct: 238 LPTPERLDDYIT--RLLATYHAEGGDTAVVRFLDQETQASEPDAP 280



 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 10/22 (45%)

Query: 97  DIDMIKCIYCGLCQEACPVDAI 118
           DID   C  C  C   CP  A+
Sbjct: 414 DIDTDNCTLCMACVAVCPTQAL 435


>gi|150390845|ref|YP_001320894.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
 gi|149950707|gb|ABR49235.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
          Length = 582

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 10/68 (14%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            AL  +   EE+CI C LC   C   AI  E+             + I   KCI CG+C 
Sbjct: 522 KALLTHNILEEKCINCGLCLRKCRLDAIIREN----------HGAHRIQTEKCIQCGVCL 571

Query: 111 EACPVDAI 118
           +ACPV+A+
Sbjct: 572 DACPVNAV 579


>gi|119714883|ref|YP_921848.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Nocardioides sp. JS614]
 gi|119535544|gb|ABL80161.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Nocardioides
           sp. JS614]
          Length = 544

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C     C  +CP Q I    G         T +  ID   CI CG C  ACPVDAI  
Sbjct: 7   QSCCEDAACVTVCPVQCIRPRPG---DPDFESTEQLYIDPSSCIDCGACATACPVDAIYP 63

Query: 121 GP 122
           G 
Sbjct: 64  GD 65


>gi|295092507|emb|CBK78614.1| Iron only hydrogenase large subunit, C-terminal domain [Clostridium
           cf. saccharolyticum K10]
          Length = 507

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQ 110
              +++CI C  C+ +C   AI I+  P                + DID  KC+ CG C 
Sbjct: 148 YIDQDKCIKCGKCKEVCGYNAIIIQERPCAAACGMDAIHSDVNGKADIDYDKCVSCGQCL 207

Query: 111 EACPVDAI 118
             CP  AI
Sbjct: 208 VNCPFGAI 215



 Score = 38.2 bits (87), Expect = 0.36,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 7/66 (10%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-------IDMIKCIYCGLCQEACPV 115
           C AC               + P      +  V  D       ID  KCI CG C+E C  
Sbjct: 107 CNACHEKRVYVTDGCQGCLAHPCVEVCPKGAVTLDRTNGRSYIDQDKCIKCGKCKEVCGY 166

Query: 116 DAIVEG 121
           +AI+  
Sbjct: 167 NAIIIQ 172


>gi|253579343|ref|ZP_04856613.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849441|gb|EES77401.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 289

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 12/99 (12%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
               G          E+ CI+C +C   C  +A+ +  G             ++D  KC 
Sbjct: 149 ENDVGIKGGMNIEYKEDDCISCGVCVKACRQEALKMVDGK-----------IELDAQKCN 197

Query: 105 YCGLCQEACPVDAIVEGPNFEFA-TETRQELYYDKERLL 142
           +CG C ++CPVDA    P +  +   T     Y  E LL
Sbjct: 198 HCGRCVKSCPVDAWKGTPGYIVSFGGTFGNNIYKGEELL 236



 Score = 34.7 bits (78), Expect = 4.0,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 16/45 (35%)

Query: 78  ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                      G +  +  +     CI CG+C +AC  +A+    
Sbjct: 142 NNCLKAEENDVGIKGGMNIEYKEDDCISCGVCVKACRQEALKMVD 186


>gi|219849508|ref|YP_002463941.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing
           protein [Chloroflexus aggregans DSM 9485]
 gi|219543767|gb|ACL25505.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Chloroflexus aggregans DSM 9485]
          Length = 1192

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 26/92 (28%), Gaps = 16/92 (17%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPR 85
              T+   +   A+         CI C  C  +CP                A        
Sbjct: 670 PTGTTKWEKRNIAIEIPVWDPNICIQCNKCVFVCPHATIRAKVYPEEALAGAPEGFQSAP 729

Query: 86  CHDGTRRTVRY--DIDMIKCIYCGLCQEACPV 115
                    RY   +    C  CGLC EACPV
Sbjct: 730 ARFKEFPGQRYTLQVAPEDCTGCGLCVEACPV 761


>gi|13474498|ref|NP_106067.1| NAD-dependent formate dehydrogenase alpha subunit [Mesorhizobium
           loti MAFF303099]
 gi|14025252|dbj|BAB51853.1| NAD-dependent formate dehydrogenase alpha subunit [Mesorhizobium
           loti MAFF303099]
          Length = 970

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 27/81 (33%), Gaps = 3/81 (3%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T      G          +  D    +C+ CG C +
Sbjct: 182 YFTYDPAQCIVCSRCVRACEEVQGTFALTIEGRGFESRMVAGMHEDFIASECVSCGACVQ 241

Query: 112 ACPVDAIVEGPNFEFATETRQ 132
           ACP DA+ E    E     R 
Sbjct: 242 ACPTDALREKTVLEKGMPERS 262


>gi|229031228|ref|ZP_04187235.1| formate dehydrogenase [Bacillus cereus AH1271]
 gi|228730095|gb|EEL81068.1| formate dehydrogenase [Bacillus cereus AH1271]
          Length = 979

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+E          +     Y     +CIAC  C  +C    +             R
Sbjct: 123 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 180

Query: 93  TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120
            +     +I+   C+ CG C   CP +A++E
Sbjct: 181 VIWDEGVNINDSSCVSCGQCVTICPCNALME 211



 Score = 39.3 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 91  RLLGNHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|221126279|ref|XP_002164598.1| PREDICTED: similar to predicted protein [Hydra magnipapillata]
          Length = 1399

 Score = 50.9 bits (120), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 11/61 (18%)

Query: 59  GEERCIACKLCEAICP---AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
            ++ CI C  C   C     QAIT E   +          +++   +C+ C LC   CPV
Sbjct: 850 NQDNCIQCGRCHIACEDTSHQAITFEKDGK--------RHFEVKEDECVGCNLCVTVCPV 901

Query: 116 D 116
            
Sbjct: 902 P 902


>gi|281356167|ref|ZP_06242660.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Victivallis vadensis
           ATCC BAA-548]
 gi|281317536|gb|EFB01557.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Victivallis vadensis
           ATCC BAA-548]
          Length = 1174

 Score = 50.9 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 28/108 (25%), Gaps = 26/108 (24%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA--------------- 77
           T    FEK   +P                +CI C  C   CP  A               
Sbjct: 665 TATSRFEKRGIAPSVPKW--------DSAKCIQCNQCVMACPHAAIRAKLIKEADLAAAP 716

Query: 78  -ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP--VDAIVEGP 122
                   +         R  + +  C  CG+C E CP    AI    
Sbjct: 717 ATFNVVDAKAVKEPGLKFRLQVFVEDCTGCGVCVETCPAKEKAITMTH 764


>gi|228966460|ref|ZP_04127513.1| formate dehydrogenase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228793182|gb|EEM40732.1| formate dehydrogenase [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 979

 Score = 50.9 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+E          +     Y     +CIAC  C  +C    +             R
Sbjct: 123 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 180

Query: 93  TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120
            +     +I+   C+ CG C   CP +A++E
Sbjct: 181 VIWDEGVNINDSSCVSCGQCVTICPCNALME 211



 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 91  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|228928622|ref|ZP_04091658.1| formate dehydrogenase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228947188|ref|ZP_04109482.1| formate dehydrogenase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|229123087|ref|ZP_04252294.1| formate dehydrogenase [Bacillus cereus 95/8201]
 gi|228660381|gb|EEL16014.1| formate dehydrogenase [Bacillus cereus 95/8201]
 gi|228812435|gb|EEM58762.1| formate dehydrogenase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228830941|gb|EEM76542.1| formate dehydrogenase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 954

 Score = 50.9 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+E          +     Y     +CIAC  C  +C    +             R
Sbjct: 98  HQKYPYE--PKVDASEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 155

Query: 93  TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120
            +     +I+   C+ CG C   CP +A++E
Sbjct: 156 VIWDEGVNINDSSCVSCGQCVTICPCNALME 186



 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 66  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDASEVDMTHPFYRYDPNQ 125

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 126 CIACGQCVEVC 136


>gi|83588937|ref|YP_428946.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Moorella
           thermoacetica ATCC 39073]
 gi|83571851|gb|ABC18403.1| Pyruvate:ferredoxin (flavodoxin) oxidoreductase [Moorella
           thermoacetica ATCC 39073]
          Length = 1171

 Score = 50.9 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 31/117 (26%), Gaps = 20/117 (17%)

Query: 31  KTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88
             +   P        +   +   A+       E CI C  C  +CP  AI          
Sbjct: 652 PVSTFTPDGVFPVGTTKYEKRGIAVNIPQWQPENCIQCNQCSLVCPHAAIRPYLAKPADL 711

Query: 89  GTRRTV----------------RYDIDMIKCIYCGLCQEACP--VDAIVEGPNFEFA 127
                                 R  +  + C  CG C + CP  V A+   P  E  
Sbjct: 712 AGAPETFVTKDAIGKEAAGLKFRIQVSPLDCTGCGNCADVCPAKVKALTMVPLEEVT 768


>gi|303248776|ref|ZP_07335028.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           fructosovorans JJ]
 gi|302489863|gb|EFL49792.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           fructosovorans JJ]
          Length = 376

 Score = 50.9 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 11/82 (13%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           + +    R+    ++CI C  C A+CPA A T++                I+   CI CG
Sbjct: 187 KQDQHCVRFVVEPKKCIGCGQCVAVCPAGAATMQDKKAF-----------IEKAICIGCG 235

Query: 108 LCQEACPVDAIVEGPNFEFATE 129
            C   CP  A+    + E    
Sbjct: 236 ECLTVCPKKAMRIDWHTEIVPF 257



 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 18/43 (41%)

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           +   PR     +  VR+ ++  KCI CG C   CP  A     
Sbjct: 179 MGCAPRAGKQDQHCVRFVVEPKKCIGCGQCVAVCPAGAATMQD 221


>gi|282882399|ref|ZP_06291027.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Peptoniphilus
           lacrimalis 315-B]
 gi|281297820|gb|EFA90288.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Peptoniphilus
           lacrimalis 315-B]
          Length = 1178

 Score = 50.9 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 40/123 (32%), Gaps = 30/123 (24%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR----------- 91
           TS   +   A+       E CI C  C  +CP   I      +     +           
Sbjct: 670 TSKYEKRGIAVNVPHWKIENCIQCNQCSLVCPHAVIRPFLLDKEEAKKKPETFETMSARG 729

Query: 92  -----RTVRYDIDMIKCIYCGLCQEACP--VDAIVEGP----------NFEFATE--TRQ 132
                   R  I  + C  CG C + CP    A+V  P          N+EFAT   ++Q
Sbjct: 730 KGLTDYEFRIQISPLDCTGCGNCAQVCPAKEKALVMTPYEKELEVQAINWEFATTVKSKQ 789

Query: 133 ELY 135
           +  
Sbjct: 790 DNI 792


>gi|294898536|ref|XP_002776267.1| pyruvate:ferredoxin oxidoreductase, putative [Perkinsus marinus
           ATCC 50983]
 gi|239883169|gb|EER08083.1| pyruvate:ferredoxin oxidoreductase, putative [Perkinsus marinus
           ATCC 50983]
          Length = 897

 Score = 50.9 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 34/120 (28%), Gaps = 19/120 (15%)

Query: 31  KTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAICPA------------- 75
             +   P        +   +   AL       ++C  C  C AICP              
Sbjct: 527 PVSSFDPRGHYPPATTQYEKRGVALTIPIVDMDKCTQCNKCSAICPHAAIRPFLISQLEA 586

Query: 76  ----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
               +A  +      +D      R  +    C  C  C  ACP +A+   P  +     R
Sbjct: 587 DVAPKAFDMRMAKGGNDVAGMMYRIQVAPEDCTGCEACSWACPDNALTMTPLEDVVEVQR 646


>gi|294886221|ref|XP_002771617.1| pyruvate:ferredoxin oxidoreductase/NADPH-cytochrome P450, putative
           [Perkinsus marinus ATCC 50983]
 gi|239875323|gb|EER03433.1| pyruvate:ferredoxin oxidoreductase/NADPH-cytochrome P450, putative
           [Perkinsus marinus ATCC 50983]
          Length = 1831

 Score = 50.9 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 34/120 (28%), Gaps = 19/120 (15%)

Query: 31  KTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAICPA------------- 75
             +   P        +   +   AL       ++C  C  C AICP              
Sbjct: 714 PVSSFDPRGHYPPATTQYEKRGVALTIPIVDMDKCTQCNKCSAICPHAAIRPFLISQLEA 773

Query: 76  ----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
               +A  +      +D      R  +    C  C  C  ACP +A+   P  +     R
Sbjct: 774 DVAPKAFDMRMAKGGNDVAGMMYRIQVAPEDCTGCEACSWACPDNALTMTPLEDVVEVQR 833


>gi|253702589|ref|YP_003023778.1| molybdopterin oxidoreductase [Geobacter sp. M21]
 gi|251777439|gb|ACT20020.1| molybdopterin oxidoreductase [Geobacter sp. M21]
          Length = 821

 Score = 50.9 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 29/101 (28%), Gaps = 7/101 (6%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
           L   Y      T  +  EK + +  +              RCI C  C  IC        
Sbjct: 113 LTFEY---KVNTNRFVDEKFNHAIDYDNPLI----ERDMNRCIHCGKCARICDEIVSYGA 165

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                     +        + C +CG C   CPV A+   P
Sbjct: 166 YTFINRGIEAKMGTEFDGPLNCEFCGSCVSVCPVGALNSRP 206


>gi|197117888|ref|YP_002138315.1| electron transfer flavoprotein subunit alpha [Geobacter
           bemidjiensis Bem]
 gi|197087248|gb|ACH38519.1| electron transfer flavoprotein, alpha subunit [Geobacter
           bemidjiensis Bem]
          Length = 442

 Score = 50.9 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/100 (29%), Positives = 38/100 (38%), Gaps = 22/100 (22%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACK-LCEAICPAQAITIESGPRCHDGTRRTVRYD 97
           E      + RG+ A+      E RCIAC   C++ CP  AI +                 
Sbjct: 3   EAVKKPKKPRGKAAVL-----EGRCIACGARCQSACPVDAIQMNEAGEPV---------- 47

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
           ID  KCI C  C + CP  AI      E A    ++   D
Sbjct: 48  IDASKCIGCVKCVKVCPAQAI------EMAFTPEEKRILD 81


>gi|328473707|gb|EGF44542.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus 10329]
          Length = 553

 Score = 50.9 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 35/102 (34%), Gaps = 9/102 (8%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
              + C  C  C A+CP +A+  +          ++         CI CGLC++ACP   
Sbjct: 415 CENKDCTLCMSCVAVCPTRALHTDG---------QSPSLKFVEQDCIQCGLCEKACPEKV 465

Query: 118 IVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
           +       +  E RQ+     E       R         + D
Sbjct: 466 LTLTTRMNWVKEERQKAVVIHEEKAAECIRCHKPFAPQSMID 507



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 6/54 (11%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           C+ C   CPA A++ E   +         R +I+   C   G C  ACP +AI 
Sbjct: 186 CERCVDACPAGALSSEGSDKTGH------RIEINPYLCQGVGTCATACPTEAIH 233


>gi|319782785|ref|YP_004142261.1| dihydroorotate dehydrogenase [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317168673|gb|ADV12211.1| dihydroorotate dehydrogenase family protein [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 437

 Score = 50.9 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 6/78 (7%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI C  C       A    S             +++   +C+ 
Sbjct: 330 QYLNLNYVAKAHIDQDACIKCGRCHI-----ACEDTSHQAITSMVDGVRHFEVIEAECVG 384

Query: 106 CGLCQEACPV-DAIVEGP 122
           C LC   CPV + I   P
Sbjct: 385 CNLCVNVCPVENCITMEP 402


>gi|312959250|ref|ZP_07773768.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas
           fluorescens WH6]
 gi|311286510|gb|EFQ65073.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas
           fluorescens WH6]
          Length = 320

 Score = 50.9 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 28/75 (37%), Gaps = 10/75 (13%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           RGE   +     E  CI C  C   CP  AI   +           + + +   +C  C 
Sbjct: 66  RGEAPAQVAYIREAECIGCTKCIQACPVDAIVGAAK----------LMHTVISDECTGCD 115

Query: 108 LCQEACPVDAIVEGP 122
           LC   CPVD I   P
Sbjct: 116 LCVAPCPVDCIEMRP 130


>gi|307718915|ref|YP_003874447.1| hypothetical protein STHERM_c12330 [Spirochaeta thermophila DSM
           6192]
 gi|306532640|gb|ADN02174.1| hypothetical protein STHERM_c12330 [Spirochaeta thermophila DSM
           6192]
          Length = 527

 Score = 50.9 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQEA 112
             ERCI C LCE +CP  AI     P                   ID   CI CG C +A
Sbjct: 191 DYERCINCGLCERVCPFHAIVRIPVPCEEVCPVGAIEKGEDGVARIDRGACILCGKCLKA 250

Query: 113 CPVDA 117
           CP  A
Sbjct: 251 CPFGA 255



 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 5/94 (5%)

Query: 29  KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88
           +    +  PFE     P      A         R +  ++C+      A   ++G     
Sbjct: 126 RGSVDLAVPFELDDGFPLHMITEA--CNACEGARFMVTEVCQGCV---ARPCKTGCPRGA 180

Query: 89  GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            +    R  ID  +CI CGLC+  CP  AIV  P
Sbjct: 181 ISIVRGRASIDYERCINCGLCERVCPFHAIVRIP 214


>gi|288575184|ref|ZP_06393540.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288568466|gb|EFC90024.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 288

 Score = 50.9 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 11/73 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +E+C+ C  C   CP +AI++  G              ID   CI CG C   CP  AI
Sbjct: 149 DDEKCVGCGRCFRNCPVKAISMTGGKAV-----------IDKDVCIGCGECLTVCPASAI 197

Query: 119 VEGPNFEFATETR 131
                 +     R
Sbjct: 198 SLDWRTDVVQFHR 210



 Score = 40.1 bits (92), Expect = 0.10,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 18/42 (42%)

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           +   P      + + R  +D  KC+ CG C   CPV AI   
Sbjct: 130 MGCAPAEGKKEQHSARMSVDDEKCVGCGRCFRNCPVKAISMT 171


>gi|218898664|ref|YP_002447075.1| molybdopterin oxidoreductase family protein [Bacillus cereus G9842]
 gi|218542322|gb|ACK94716.1| molybdopterin oxidoreductase family protein [Bacillus cereus G9842]
          Length = 979

 Score = 50.9 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+E          +     Y     +CIAC  C  +C    +             R
Sbjct: 123 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 180

Query: 93  TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120
            +     +I+   C+ CG C   CP +A++E
Sbjct: 181 VIWDEGVNINDSSCVSCGQCVTICPCNALME 211



 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 91  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|162147298|ref|YP_001601759.1| dihydropyrimidine dehydrogenase [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161785875|emb|CAP55446.1| Dihydroorotate dehydrogenase [Gluconacetobacter diazotrophicus PAl
           5]
          Length = 426

 Score = 50.9 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 5/66 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117
            +E CI C LC   C   +    +  R          Y +    C+ C LC   CPV D 
Sbjct: 341 DQESCIQCGLCHIACEDTSHQAIARTRVEG----RRHYAVIDEACVGCNLCAHVCPVDDC 396

Query: 118 IVEGPN 123
           I   P 
Sbjct: 397 ITMVPQ 402


>gi|327393782|dbj|BAK11204.1| electron transport complex protein RnfC [Pantoea ananatis AJ13355]
          Length = 814

 Score = 50.9 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 3/110 (2%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                 E+ CI C  C   CPA+ +  +       G     R    +  CI CG C   C
Sbjct: 368 MGNDEQEQSCIRCSACADACPAKLLPQQLYWYSKGGDHDKAR-AHHIDDCIECGACAYVC 426

Query: 114 PVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           P   I     +       + +  + +R L    R+E+   R +  +   R
Sbjct: 427 P-SNIPLVQYYRQEKAELRAIDLEAKRTLEAKARFEARQAR-LEREKQAR 474


>gi|260893278|ref|YP_003239375.1| methyl-viologen-reducing hydrogenase delta subunit [Ammonifex
           degensii KC4]
 gi|260865419|gb|ACX52525.1| methyl-viologen-reducing hydrogenase delta subunit [Ammonifex
           degensii KC4]
          Length = 810

 Score = 50.9 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 29/96 (30%), Gaps = 7/96 (7%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA-------ITIESGPR 85
           T  +  E       F             ++C+ C  C AICP +        I+      
Sbjct: 222 TRTWVKEVKKDGGNFLVTLWQEPQFVNSQKCVECGRCAAICPVEVENDFDMGISRRKAAY 281

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
                     Y ID   C  CG C  ACP  AI   
Sbjct: 282 KPHPMALPPGYTIDPNSCTRCGACVGACPAQAIDLQ 317



 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 23/72 (31%), Gaps = 10/72 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++C  C  C  +CP   I                 Y      C  CGLC  ACP  AI
Sbjct: 608 DPQKCSGCGFCAKVCPHGVIQRREDG----------TYYTSPAFCQGCGLCTTACPTGAI 657

Query: 119 VEGPNFEFATET 130
                 E + E 
Sbjct: 658 RITNFNEESVEK 669


>gi|260434027|ref|ZP_05787998.1| iron-sulfur cluster-binding protein [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260417855|gb|EEX11114.1| iron-sulfur cluster-binding protein [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 651

 Score = 50.9 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 9/82 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E C  C  C ++CP+ A+                + +     C+ CGLC+  CP  AI
Sbjct: 499 DTEACTLCLSCVSLCPSGALIDNPD---------LPQLNYQQDACLQCGLCKTICPESAI 549

Query: 119 VEGPNFEFATETRQELYYDKER 140
              P  + +         ++E 
Sbjct: 550 TLVPELDLSDRALSPRVLNEEE 571



 Score = 38.2 bits (87), Expect = 0.37,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 20/55 (36%), Gaps = 11/55 (20%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C  C  ICP  AIT                  ID + C  CG C   CP  AI
Sbjct: 277 VGCSNCLDICPTGAITPAGD-----------HVAIDPMVCAGCGECAALCPSTAI 320


>gi|229157143|ref|ZP_04285223.1| formate dehydrogenase [Bacillus cereus ATCC 4342]
 gi|228626207|gb|EEK82954.1| formate dehydrogenase [Bacillus cereus ATCC 4342]
          Length = 1022

 Score = 50.9 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+E          +     Y     +CIAC  C  +C    +             R
Sbjct: 166 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 223

Query: 93  TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120
            +     +I+   C+ CG C   CP +A++E
Sbjct: 224 VIWDEGVNINDSSCVSCGQCVTICPCNALME 254



 Score = 39.3 bits (90), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 134 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 193

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 194 CIACGQCVEVC 204


>gi|153853057|ref|ZP_01994466.1| hypothetical protein DORLON_00451 [Dorea longicatena DSM 13814]
 gi|149753843|gb|EDM63774.1| hypothetical protein DORLON_00451 [Dorea longicatena DSM 13814]
          Length = 503

 Score = 50.9 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 7/78 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDG------TRRTVRYDIDMIKCIYCGLCQ 110
              +E+CI C  C+++CP  AI+ +  P             +  R  ++  KC+ CG+C 
Sbjct: 148 YIDQEKCIKCGKCKSVCPYDAISKKERPCAKACGVNAIENDKVGRAYVNPDKCVSCGMCM 207

Query: 111 EACPVDAI-VEGPNFEFA 127
             CP  AI  +   F+ A
Sbjct: 208 VNCPFGAISDKSQIFQLA 225



 Score = 42.0 bits (97), Expect = 0.025,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 13/64 (20%)

Query: 57  PNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 C  C    C  +CP  AI++ +G              ID  KCI CG C+  CP
Sbjct: 117 YEVSNMCKGCLAHPCMEVCPKGAISMVNGKSY-----------IDQEKCIKCGKCKSVCP 165

Query: 115 VDAI 118
            DAI
Sbjct: 166 YDAI 169


>gi|56965540|ref|YP_177274.1| dihydropyrimidine dehydrogenase [Bacillus clausii KSM-K16]
 gi|56911786|dbj|BAD66313.1| dihydropyrimidine dehydrogenase [Bacillus clausii KSM-K16]
          Length = 419

 Score = 50.9 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 4/65 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117
             + CI C  C   C   A          +G         D  +C+ C LC   CPV+ A
Sbjct: 338 NRDVCINCNKCHISCEDTAHQCIGRYTDENGAPYLKV---DEDECVGCNLCSIVCPVEGA 394

Query: 118 IVEGP 122
           I   P
Sbjct: 395 IAMVP 399


>gi|47568933|ref|ZP_00239625.1| formate dehydrogenase, alpha subunit [Bacillus cereus G9241]
 gi|47554417|gb|EAL12776.1| formate dehydrogenase, alpha subunit [Bacillus cereus G9241]
          Length = 979

 Score = 50.9 bits (120), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+E          +     Y     +CIAC  C  +C    +             R
Sbjct: 123 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 180

Query: 93  TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120
            +     +I+   C+ CG C   CP +A++E
Sbjct: 181 VIWDEGVNINDSSCVSCGQCVTICPCNALME 211



 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 91  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|256752102|ref|ZP_05492969.1| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|256749011|gb|EEU62048.1| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter ethanolicus
           CCSD1]
          Length = 291

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 22/108 (20%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE-------ERCIACKLCEAICPA 75
            L    K K   +   E  + +   +GE   +R   G+       ++CI C LCE +C  
Sbjct: 21  TLSTIVKNKIMADCDVEAPNLNIVLQGEIIEKRDFYGKETAVIDKDKCIECGLCEELCRF 80

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
            AI+                ++++   C  CGLC   CPV+AI     
Sbjct: 81  DAISN---------------FEVNPYYCEGCGLCMYKCPVEAIKLIEE 113


>gi|217963307|ref|YP_002348985.1| formate dehydrogenase Alpha subunit [Listeria monocytogenes HCC23]
 gi|217332577|gb|ACK38371.1| formate dehydrogenase Alpha subunit [Listeria monocytogenes HCC23]
 gi|307572114|emb|CAR85293.1| formate dehydrogenase, alpha subunit [Listeria monocytogenes L99]
          Length = 995

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 3/84 (3%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           +      +  + +   Y    ++CI C  C   C    +             R +  D  
Sbjct: 125 RPYREKGYLNDFSHPFYRYDPDQCILCGRCVEACQQVQVNETLSIDWERSQPRVIWDDDR 184

Query: 100 MIK---CIYCGLCQEACPVDAIVE 120
                 C+ CGLC   CP +A++E
Sbjct: 185 PANLSSCVSCGLCATVCPCNALME 208



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 9/69 (13%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCI 104
           R   N    C  C      C+     + + +E   R +             Y  D  +CI
Sbjct: 90  RILENHLLYCTVCDNNNGNCKVHNTTELLGVEKQDRPYREKGYLNDFSHPFYRYDPDQCI 149

Query: 105 YCGLCQEAC 113
            CG C EAC
Sbjct: 150 LCGRCVEAC 158


>gi|320159713|ref|YP_004172937.1| dihydroorotate dehydrogenase family protein [Anaerolinea
           thermophila UNI-1]
 gi|319993566|dbj|BAJ62337.1| dihydroorotate dehydrogenase family protein [Anaerolinea
           thermophila UNI-1]
          Length = 375

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 37/107 (34%), Gaps = 24/107 (22%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEE--------------RCIACKLCEAICPAQAI 78
           T  +  E G +S +      L +Y NG+               RC  C +CE +C   A+
Sbjct: 277 TARWLEEHGYSSLQEVKGKFLEKYRNGQRVVTSLEQVAVVDEARCKGCGVCERVCQYDAL 336

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
                              +D   C  CGLC   CP DA+     +E
Sbjct: 337 RAPQKQVA----------QVDAELCAACGLCVSVCPHDALSLRLRWE 373


>gi|296165553|ref|ZP_06848081.1| ferredoxin-NADP reductase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295899092|gb|EFG78570.1| ferredoxin-NADP reductase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 539

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C     C  +CP   I          GT       ID + CI CG C +ACPVDAI
Sbjct: 7   QSCCKDASCVPVCPVDCIRPVGATGEITGT---EMLYIDPVTCIDCGACVDACPVDAI 61


>gi|269959878|ref|ZP_06174255.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269835177|gb|EEZ89259.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 1451

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 14/79 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIE--------------SGPRCHDGTRRTVRYDIDMIKCI 104
              RCI+C  C   C  +A+                    R H G+ +     +    C+
Sbjct: 670 DANRCISCGQCIQACRDKAVHGVLNFVCDKQGRPALRPDDRPHFGSNKNGLTLMGDSNCV 729

Query: 105 YCGLCQEACPVDAIVEGPN 123
            CG C + CP  A+V+  +
Sbjct: 730 QCGACVQVCPTGAMVDSRD 748


>gi|269966134|ref|ZP_06180224.1| putative formate dehydrogenase, alpha subunit [Vibrio alginolyticus
           40B]
 gi|269829281|gb|EEZ83525.1| putative formate dehydrogenase, alpha subunit [Vibrio alginolyticus
           40B]
          Length = 1451

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 14/79 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIE--------------SGPRCHDGTRRTVRYDIDMIKCI 104
              RCI+C  C   C  +A+                    R H G+ +     +    C+
Sbjct: 670 DANRCISCGQCIQACRDKAVHGVLNFVCDKQGRPALRPDDRPHFGSNKNGLTLMGDSNCV 729

Query: 105 YCGLCQEACPVDAIVEGPN 123
            CG C + CP  A+V+  +
Sbjct: 730 QCGACVQVCPTGAMVDSRD 748


>gi|228986658|ref|ZP_04146788.1| formate dehydrogenase [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228772989|gb|EEM21425.1| formate dehydrogenase [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
          Length = 1022

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+E          +     Y     +CIAC  C  +C    +             R
Sbjct: 166 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 223

Query: 93  TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120
            +     +I+   C+ CG C   CP +A++E
Sbjct: 224 VIWDEGVNINDSSCVSCGQCVTICPCNALME 254



 Score = 39.3 bits (90), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 134 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 193

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 194 CIACGQCVEVC 204


>gi|110802004|ref|YP_699826.1| [Fe] hydrogenase [Clostridium perfringens SM101]
 gi|110682505|gb|ABG85875.1| [Fe] hydrogenase [Clostridium perfringens SM101]
          Length = 490

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 7/68 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-------IDMIKCIYCGLCQE 111
             E+C  C  C+ +CP  AI     P       + + YD       ID  KCI CG C  
Sbjct: 133 DYEKCKECGKCKEVCPYNAIAEVKRPCMRACIPKALSYDVDSKKAVIDDSKCIQCGACVV 192

Query: 112 ACPVDAIV 119
            CP  AI+
Sbjct: 193 DCPFGAIM 200



 Score = 41.6 bits (96), Expect = 0.036,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 3/70 (4%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +        R I    C      +     +    +   R+     ID  KC  CG C+E 
Sbjct: 90  IACDECPVNRFIVTDACRGCLAKKCRDSCNFEAINFDNRKCK---IDYEKCKECGKCKEV 146

Query: 113 CPVDAIVEGP 122
           CP +AI E  
Sbjct: 147 CPYNAIAEVK 156


>gi|229162404|ref|ZP_04290367.1| formate dehydrogenase [Bacillus cereus R309803]
 gi|228621088|gb|EEK77951.1| formate dehydrogenase [Bacillus cereus R309803]
          Length = 975

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+E          +     Y     +CIAC  C  +C    +             R
Sbjct: 119 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 176

Query: 93  TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120
            +     +I+   C+ CG C   CP +A++E
Sbjct: 177 VIWDEGVNINDSSCVSCGQCVTICPCNALME 207



 Score = 39.3 bits (90), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 87  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 146

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 147 CIACGQCVEVC 157


>gi|217077618|ref|YP_002335336.1| NADP-reducing hydrogenase, subunit c [Thermosipho africanus TCF52B]
 gi|217037473|gb|ACJ75995.1| NADP-reducing hydrogenase, subunit c [Thermosipho africanus TCF52B]
          Length = 602

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 10/66 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L  Y    E+C+ C  C  +CP  AI  E              ++ID   C+ CG C E 
Sbjct: 539 LISYVINPEKCVGCTACARVCPVNAINGEVKK----------VHEIDQDACVKCGSCIEV 588

Query: 113 CPVDAI 118
           C   AI
Sbjct: 589 CRFGAI 594



 Score = 42.0 bits (97), Expect = 0.030,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 17/41 (41%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            +          +  + Y I+  KC+ C  C   CPV+AI 
Sbjct: 525 HVRDKTCPAKKCKDLISYVINPEKCVGCTACARVCPVNAIN 565


>gi|197103275|ref|YP_002128653.1| NADPH-dependent glutamate synthase beta chain [Phenylobacterium
           zucineum HLK1]
 gi|196480551|gb|ACG80078.1| NADPH-dependent glutamate synthase beta chain [Phenylobacterium
           zucineum HLK1]
          Length = 546

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 21/63 (33%), Gaps = 3/63 (4%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            RC++C  C       A   E         RR   Y     +C  C +C E CP  AI  
Sbjct: 483 RRCLSCGNCFECDQCYAACPEQAIEKLGPGRR---YRYLYDRCTGCAVCFETCPCHAIEM 539

Query: 121 GPN 123
              
Sbjct: 540 IQE 542


>gi|119476464|ref|ZP_01616815.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB [marine
           gamma proteobacterium HTCC2143]
 gi|119450328|gb|EAW31563.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB [marine
           gamma proteobacterium HTCC2143]
          Length = 201

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 29/85 (34%), Gaps = 10/85 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E          E+        E+ CI C  C   CP  AI   +             + +
Sbjct: 97  EAVPLDAEHGEENVKTVAYIREDECIGCTKCIQACPVDAILGAAKQ----------MHTV 146

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPN 123
            + +C  C LC E CPVD I   P 
Sbjct: 147 IVSECTGCDLCVEPCPVDCIDMLPI 171


>gi|167039047|ref|YP_001662032.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing
           protein [Thermoanaerobacter sp. X514]
 gi|300913362|ref|ZP_07130679.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter
           sp. X561]
 gi|307723624|ref|YP_003903375.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter
           sp. X513]
 gi|166853287|gb|ABY91696.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Thermoanaerobacter sp. X514]
 gi|300890047|gb|EFK85192.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter
           sp. X561]
 gi|307580685|gb|ADN54084.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter
           sp. X513]
          Length = 1175

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 53/143 (37%), Gaps = 31/143 (21%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTRRTV 94
            G+ +   RG           + CI C  C  +CP  AI     T E      +G +   
Sbjct: 667 PGTAAYEKRGIAVDVPEWQ-IDNCIQCNQCAFVCPHAAIRPFLLTEEEVKNAPEGFKVKK 725

Query: 95  -----------RYDIDMIKCIYCGLCQEACP--VDAIVEGP---------NFEFATE-TR 131
                      R  + ++ C  CG+C   CP    A+V  P         N+E+A   + 
Sbjct: 726 AIGKGFEGLYYRIQVSVLDCTGCGVCANECPAKEKALVMKPLETQMEEAKNWEYAMTLSP 785

Query: 132 QELYYDKERLLNNGDRWESEIVR 154
           +E   +KE     G ++E+ ++ 
Sbjct: 786 KENPMNKE--TVKGSQFETPLLE 806


>gi|294102533|ref|YP_003554391.1| protein of unknown function DUF362 [Aminobacterium colombiense DSM
           12261]
 gi|293617513|gb|ADE57667.1| protein of unknown function DUF362 [Aminobacterium colombiense DSM
           12261]
          Length = 377

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + CI C+ CE IC A A+ ++S  + H           +  KCI C  CQE CP +AI
Sbjct: 312 NPDLCIRCRKCEEICAAHAVILDSNGKLHF----------NYNKCIRCFCCQEVCPNNAI 361

Query: 119 VEGP 122
               
Sbjct: 362 EFQK 365


>gi|261880705|ref|ZP_06007132.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Prevotella bergensis
           DSM 17361]
 gi|270332477|gb|EFA43263.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Prevotella bergensis
           DSM 17361]
          Length = 1201

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 16/102 (15%)

Query: 28  FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA------------ 75
           F    T++  ++ G+++   RG  A     N  E CI C  C   CP             
Sbjct: 658 FVKHGTVDGTWQNGTSAYEKRGVEAFVPQWN-PENCIQCNKCAYSCPHATIRPFVMDDEE 716

Query: 76  -QAITIESGPRCHDGTRRTVRYDIDMI--KCIYCGLCQEACP 114
            +A+++ES         + + + I +    C+ CG C + CP
Sbjct: 717 NKAVSLESLEMKAPKEMKGMHFRIQVSVMDCLGCGNCADVCP 758


>gi|145591121|ref|YP_001153123.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum arsenaticum DSM 13514]
 gi|145282889|gb|ABP50471.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           arsenaticum DSM 13514]
          Length = 373

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 15/93 (16%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           +++CI C LC   CPA A                    +    C+ CGLC   CPVDAI 
Sbjct: 84  QDKCIWCGLCAGYCPASAFEYVE----------RAVVRVKYDLCVDCGLCNSVCPVDAIK 133

Query: 120 E-----GPNFEFATETRQELYYDKERLLNNGDR 147
                     +    +R+ L +  +    +GD 
Sbjct: 134 MPSLPDTYLADLVKTSRRPLKFICDYAFEDGDE 166



 Score = 41.2 bits (95), Expect = 0.045,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 33/107 (30%), Gaps = 19/107 (17%)

Query: 27  FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER--------CIACKLCEAICPAQAI 78
             +   T     EK +  P  R +  +     G           C  C  C  +CP  A+
Sbjct: 215 LGREGNTFYVKAEKAALEPGDRWQTRMLAIAVGMPAGVVRVKEGCTLCGACVNVCPTDAL 274

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           +I+                +    CI CG+C E CP   I      E
Sbjct: 275 SIKGHE-----------LRLVPALCIACGVCAEKCPEGVIEIRQQPE 310


>gi|114765412|ref|ZP_01444527.1| NAD-dependent formate dehydrogenase, alpha subunit [Pelagibaca
           bermudensis HTCC2601]
 gi|114542255|gb|EAU45285.1| NAD-dependent formate dehydrogenase, alpha subunit [Roseovarius sp.
           HTCC2601]
          Length = 973

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 29/82 (35%), Gaps = 4/82 (4%)

Query: 55  RYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            +     +CI C  C   C       A+TIE        +      D     C+ CG C 
Sbjct: 186 YFTYDPSKCIVCSRCVRACEEVQGTFALTIEGRGFESRVSAGASGDDFLSSDCVSCGACV 245

Query: 111 EACPVDAIVEGPNFEFATETRQ 132
           +ACP   + E    E  T  R+
Sbjct: 246 QACPTATLQEKSVAELGTPDRE 267


>gi|94265001|ref|ZP_01288771.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
 gi|93454548|gb|EAT04829.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
          Length = 668

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 18/87 (20%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            + C+ C  C  +CP  A  I+   R                 C+ CGLC  ACP  AI 
Sbjct: 495 NDYCVKCLNCVRLCPYDAPRIDRTARVP------------AEHCLACGLCYGACPTGAIR 542

Query: 120 EGPNFEFATETRQELYYDKERLLNNGD 146
              N      + ++L    +RLL   D
Sbjct: 543 LQNN------SPEQLAASSQRLLAELD 563


>gi|21539315|gb|AAM53401.1| pyruvate:ferredoxin oxidoreductase [Mastigamoeba balamuthi]
          Length = 1202

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/119 (24%), Positives = 42/119 (35%), Gaps = 23/119 (19%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTR--------RTV 94
           RG      + N  E+C+ C  C  +CP   I     + E       G             
Sbjct: 689 RGIAESVPHWN-HEKCVQCNQCSFVCPHAVIRSYQISEEEMKNAPAGFDTLKSRKPGYRF 747

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGP---NFEFATETR---QELYYDKERLLNNGDR 147
           R ++  + C  C +C E CPV  +   P    FE   +     +E+   K  L   GDR
Sbjct: 748 RINVSALDCTGCSVCVEQCPVKCLEMKPLESEFEMQKDAIRFVREMVAPKPEL---GDR 803


>gi|114566201|ref|YP_753355.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337136|gb|ABI67984.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 590

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 34/95 (35%), Gaps = 14/95 (14%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
             +RY F+ +   +   +K            L +Y    +RC+ C LC   CPA  I   
Sbjct: 501 TTIRY-FRDEYEAHIREKKCPAKQC----QELLQYIIDPDRCMGCGLCVYACPADCIK-- 553

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
                  G      Y I+   C  CG C + CP  
Sbjct: 554 -------GGENNQPYYIEQENCSKCGACLDICPER 581



 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/45 (35%), Positives = 21/45 (46%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
            I          +  ++Y ID  +C+ CGLC  ACP D I  G N
Sbjct: 513 HIREKKCPAKQCQELLQYIIDPDRCMGCGLCVYACPADCIKGGEN 557


>gi|323476735|gb|ADX81973.1| thiamine pyrophosphate domain, TPP-binding protein [Sulfolobus
           islandicus HVE10/4]
          Length = 612

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 22/68 (32%), Gaps = 10/68 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L +     E+C  C +C       AI      +            ID   CI CG C   
Sbjct: 541 LPKAIVDLEKCTGCSICYDYFTCPAIIPRKDKKAE----------IDNYTCIGCGACIPV 590

Query: 113 CPVDAIVE 120
           CP  AI  
Sbjct: 591 CPFKAISL 598


>gi|315187127|gb|EFU20884.1| hydrogenase large subunit domain protein [Spirochaeta thermophila
           DSM 6578]
          Length = 527

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQEA 112
             ERCI C LCE +CP  AI     P                   ID   CI CG C +A
Sbjct: 191 DYERCINCGLCERVCPFHAIVRIPVPCEEVCPVGAIEKGEDGVARIDRGACILCGKCLKA 250

Query: 113 CPVDA 117
           CP  A
Sbjct: 251 CPFGA 255



 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 31/94 (32%), Gaps = 5/94 (5%)

Query: 29  KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88
           +    +  PFE     P      A         R +  ++C+        T         
Sbjct: 126 RGSVDLAVPFELDDGFPLHMITEA--CNACEGARFMVTEVCQGCVARPCKTGCPKGAISI 183

Query: 89  GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                 R  ID  +CI CGLC+  CP  AIV  P
Sbjct: 184 ---VRGRASIDYERCINCGLCERVCPFHAIVRIP 214


>gi|289524270|ref|ZP_06441124.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289502489|gb|EFD23653.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 1184

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 23/89 (25%), Gaps = 16/89 (17%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHD 88
           TS   +   A+         CI C  C  ICP                A           
Sbjct: 676 TSKWEKRNIAVEIPKWNPSACIQCGRCTFICPHATIRAKVYDKSYLKDAPEGWQYAEAKW 735

Query: 89  GTRRTVRYDID--MIKCIYCGLCQEACPV 115
              +   + I      C  CG C   CPV
Sbjct: 736 PQYKDQAFTIQIAPEDCTGCGSCVANCPV 764



 Score = 33.5 bits (75), Expect = 8.8,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 18/56 (32%), Gaps = 13/56 (23%)

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVR 154
           +   CI CG C   CP   I                 YDK  L +  + W+    +
Sbjct: 692 NPSACIQCGRCTFICPHATIRAK-------------VYDKSYLKDAPEGWQYAEAK 734


>gi|288800889|ref|ZP_06406346.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Prevotella sp.
           oral taxon 299 str. F0039]
 gi|288332350|gb|EFC70831.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Prevotella sp.
           oral taxon 299 str. F0039]
          Length = 1191

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 30/101 (29%), Gaps = 18/101 (17%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK----- 102
           RG  A        + CI C  C  +CP   I                  D+ + K     
Sbjct: 678 RGVEAFNPEWT-ADNCIQCNKCAYVCPHACIRPFVLDEAEHAQFNDTTLDMKVPKTMAGM 736

Query: 103 ----------CIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
                     C+ CG C + CP +    G   +    TR E
Sbjct: 737 HFRIQVSVLDCVGCGNCADVCPGN--KNGKALDMVPFTRDE 775


>gi|206901010|ref|YP_002251422.1| iron-sulfur cluster-binding protein [Dictyoglomus thermophilum
           H-6-12]
 gi|206740113|gb|ACI19171.1| iron-sulfur cluster-binding protein [Dictyoglomus thermophilum
           H-6-12]
          Length = 369

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 21/65 (32%), Gaps = 10/65 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI C+ C   CP  A+ + +                    CI CG C   CP  AI
Sbjct: 191 NPNLCIGCRRCVTHCPTGALEMVNKKSVLT----------RPDLCIGCGECAVVCPTSAI 240

Query: 119 VEGPN 123
               N
Sbjct: 241 KILWN 245


>gi|164686658|ref|ZP_02210686.1| hypothetical protein CLOBAR_00253 [Clostridium bartlettii DSM
           16795]
 gi|164604048|gb|EDQ97513.1| hypothetical protein CLOBAR_00253 [Clostridium bartlettii DSM
           16795]
          Length = 628

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 34/81 (41%), Gaps = 12/81 (14%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
             K    P  + +  L  + N    CI C LC+  CPA AIT E   +          + 
Sbjct: 557 HVKDKKCPAAKCQSMLNYFIND--NCIGCGLCKKNCPADAITGEKKEK----------HV 604

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID  KC+ CG C E C   AI
Sbjct: 605 IDTTKCLKCGACMEKCKKHAI 625



 Score = 38.5 bits (88), Expect = 0.32,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 9/72 (12%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
            ++         +  + Y I+   CI CGLC++ CP DAI          E +++   D 
Sbjct: 557 HVKDKKCPAAKCQSMLNYFIN-DNCIGCGLCKKNCPADAI--------TGEKKEKHVIDT 607

Query: 139 ERLLNNGDRWES 150
            + L  G   E 
Sbjct: 608 TKCLKCGACMEK 619


>gi|27377428|ref|NP_768957.1| formate dehydrogenase subunit alpha [Bradyrhizobium japonicum USDA
           110]
 gi|27350572|dbj|BAC47582.1| formate dehydrogenase alpha subunit [Bradyrhizobium japonicum USDA
           110]
          Length = 922

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 3/98 (3%)

Query: 25  RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESG 83
             F+    T      +   + R+  + +        + CI C LC   C   Q   +   
Sbjct: 109 SKFWHWAETTGVTESRFPAAERWATDASHPAMRVNLDACIQCGLCVRACREVQVNDVIGM 168

Query: 84  PRCHDGTRRTVRYD--IDMIKCIYCGLCQEACPVDAIV 119
                G++    +D  +    C+ CG C +ACP  A++
Sbjct: 169 AYRSHGSKIVFDFDDPMGESTCVACGECVQACPTGALM 206


>gi|148266248|ref|YP_001232954.1| molybdopterin oxidoreductase [Geobacter uraniireducens Rf4]
 gi|146399748|gb|ABQ28381.1| molybdopterin oxidoreductase [Geobacter uraniireducens Rf4]
          Length = 828

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 26/93 (27%), Gaps = 4/93 (4%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
              T  +  EK      +              RCI C  C  IC                
Sbjct: 118 KVNTNKFHDEKFHHKIDYENPLI----ERDMNRCIHCGKCARICDEIVSYGAYTFISRGI 173

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
             +        + C +CG C   CPV A++  P
Sbjct: 174 EAKMGTEFDGPLNCEFCGSCVSVCPVGALISRP 206



 Score = 34.3 bits (77), Expect = 5.1,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 19/66 (28%), Gaps = 5/66 (7%)

Query: 53  LRRYPNGEERCIACKLC-----EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           L ++P     C A   C                      H         + DM +CI+CG
Sbjct: 92  LLKHPIDCPVCDAAGDCDLQNLTYEYKVNTNKFHDEKFHHKIDYENPLIERDMNRCIHCG 151

Query: 108 LCQEAC 113
            C   C
Sbjct: 152 KCARIC 157


>gi|325968712|ref|YP_004244904.1| pyruvate:ferredoxin oxidoreductase (POR), subunit delta
           [Vulcanisaeta moutnovskia 768-28]
 gi|323707915|gb|ADY01402.1| Pyruvate:ferredoxin oxidoreductase (POR), subunit delta
           [Vulcanisaeta moutnovskia 768-28]
          Length = 366

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 31/91 (34%), Gaps = 13/91 (14%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P ++        G     R     ++CI C LC   CP     +               +
Sbjct: 248 PNQRNPYFTG--GTAKHYRPVINFDKCIKCSLCWEYCPDSVFDVTPDG----------YF 295

Query: 97  DIDMIKCIYCGLCQEACPVD-AIVEGPNFEF 126
           +  +  C  CG+C E CPV   I+     EF
Sbjct: 296 NPVLAYCKGCGICAEVCPVPDTIIMVDEMEF 326


>gi|305663539|ref|YP_003859827.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Ignisphaera aggregans DSM 17230]
 gi|304378108|gb|ADM27947.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Ignisphaera aggregans DSM 17230]
          Length = 107

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGP-RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
            +++CI C +C  +CP  AI+I   P +   G       +ID   C  CGLC E CPV A
Sbjct: 40  NQDKCIRCLICWIVCPEPAISIADKPYKDSRGREWKFTLEIDYNYCKGCGLCVEECPVKA 99

Query: 118 IVEGPN 123
           I     
Sbjct: 100 IDFVEE 105


>gi|224371989|ref|YP_002606155.1| PorA4 [Desulfobacterium autotrophicum HRM2]
 gi|223694708|gb|ACN17991.1| PorA4 [Desulfobacterium autotrophicum HRM2]
          Length = 1167

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 34/112 (30%), Gaps = 20/112 (17%)

Query: 31  KTTINYPFEKGS--TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA----------- 77
             +   P       TS   +   A+       E CI C  C  +CP  A           
Sbjct: 653 PVSSFSPDGIFPNSTSKYEKRGVAINVPEWIPENCIQCNQCSFVCPHAAIIPIVATEDEL 712

Query: 78  -----ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP--VDAIVEGP 122
                       +  D      R  I+ + C  CG C + CP  V A+V  P
Sbjct: 713 KNAPGTFETVEGKGKDLKDYKFRMQINPLDCQGCGNCADICPAKVKALVMKP 764


>gi|209544343|ref|YP_002276572.1| dihydropyrimidine dehydrogenase [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209532020|gb|ACI51957.1| dihydroorotate dehydrogenase family protein [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 426

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 5/66 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117
            +E CI C LC   C   +    +  R          Y +    C+ C LC   CPV D 
Sbjct: 341 DQESCIQCGLCHIACEDTSHQAIARTRVEG----RRHYAVIDEACVGCNLCAHVCPVDDC 396

Query: 118 IVEGPN 123
           I   P 
Sbjct: 397 ITMVPQ 402


>gi|169343278|ref|ZP_02864288.1| [Fe] hydrogenase [Clostridium perfringens C str. JGS1495]
 gi|169298576|gb|EDS80657.1| [Fe] hydrogenase [Clostridium perfringens C str. JGS1495]
          Length = 490

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 7/68 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-------IDMIKCIYCGLCQE 111
             E+C  C  C+ +CP  AI     P       + + YD       ID  KCI CG C  
Sbjct: 133 DYEKCKECGKCKEVCPYNAIAEVKRPCMRACIPKALSYDVDSKKAVIDDSKCIQCGACVV 192

Query: 112 ACPVDAIV 119
            CP  AI+
Sbjct: 193 DCPFGAIM 200



 Score = 40.9 bits (94), Expect = 0.069,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 3/70 (4%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +        R I    C      +     +        R+     ID  KC  CG C+E 
Sbjct: 90  IACDECPVNRFIVTDACRGCLAKKCRDSCNFGAISFDNRKCK---IDYEKCKECGKCKEV 146

Query: 113 CPVDAIVEGP 122
           CP +AI E  
Sbjct: 147 CPYNAIAEVK 156


>gi|157364373|ref|YP_001471140.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO]
 gi|157314977|gb|ABV34076.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO]
          Length = 599

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 10/66 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L RY     +C+ C  C  +CP  AI+ E              + ID   CI CG C E 
Sbjct: 539 LIRYVIDSAKCVGCTACARVCPVNAISGEIRK----------THVIDNDICIRCGSCIEV 588

Query: 113 CPVDAI 118
           C   AI
Sbjct: 589 CRFGAI 594



 Score = 42.0 bits (97), Expect = 0.025,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 8/61 (13%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
            ++         +  +RY ID  KC+ C  C   CPV+AI        + E R+    D 
Sbjct: 525 HVKEKRCPALKCKNLIRYVIDSAKCVGCTACARVCPVNAI--------SGEIRKTHVIDN 576

Query: 139 E 139
           +
Sbjct: 577 D 577


>gi|148643398|ref|YP_001273911.1| flavoprotein [Methanobrevibacter smithii ATCC 35061]
 gi|222445640|ref|ZP_03608155.1| hypothetical protein METSMIALI_01280 [Methanobrevibacter smithii
           DSM 2375]
 gi|261349809|ref|ZP_05975226.1| archaeoflavoprotein, MJ0208 family [Methanobrevibacter smithii DSM
           2374]
 gi|148552415|gb|ABQ87543.1| flavoprotein [Methanobrevibacter smithii ATCC 35061]
 gi|222435205|gb|EEE42370.1| hypothetical protein METSMIALI_01280 [Methanobrevibacter smithii
           DSM 2375]
 gi|288860594|gb|EFC92892.1| archaeoflavoprotein, MJ0208 family [Methanobrevibacter smithii DSM
           2374]
          Length = 233

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/88 (32%), Positives = 38/88 (43%), Gaps = 18/88 (20%)

Query: 61  ERCIACKLCEA--ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +C  CK C A  IC  +AI                   ID++KCI CGLC++ACP  AI
Sbjct: 145 SKCEDCKECVASLICEQKAIVPHKE--------------IDLLKCIGCGLCKDACPNGAI 190

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGD 146
            EG         R     + ++L   GD
Sbjct: 191 SEGKI--ITMYMRDIDIENTKKLTGIGD 216


>gi|110800553|ref|YP_697264.1| [Fe] hydrogenase [Clostridium perfringens ATCC 13124]
 gi|110675200|gb|ABG84187.1| [Fe] hydrogenase [Clostridium perfringens ATCC 13124]
          Length = 490

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 7/68 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-------IDMIKCIYCGLCQE 111
             E+C  C  C+ +CP  AI     P       + + YD       ID  KCI CG C  
Sbjct: 133 DYEKCKECGKCKEVCPYNAIAEVKRPCMRACIPKALSYDVDSKKAVIDDSKCIQCGACVV 192

Query: 112 ACPVDAIV 119
            CP  AI+
Sbjct: 193 DCPFGAIM 200



 Score = 40.9 bits (94), Expect = 0.069,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 3/70 (4%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +        R I    C      +     +        R+     ID  KC  CG C+E 
Sbjct: 90  IACDECPVNRFIVTDACRGCLAKKCRDSCNFGAISFDNRKCK---IDYEKCKECGKCKEV 146

Query: 113 CPVDAIVEGP 122
           CP +AI E  
Sbjct: 147 CPYNAIAEVK 156


>gi|94269811|ref|ZP_01291569.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
 gi|93451066|gb|EAT02016.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
          Length = 668

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 18/87 (20%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            + C+ C  C  +CP  A  I+   R                 C+ CGLC  ACP  AI 
Sbjct: 495 NDYCVKCLNCVRLCPYDAPRIDRTARVP------------AEHCLACGLCYGACPTGAIR 542

Query: 120 EGPNFEFATETRQELYYDKERLLNNGD 146
              N      + ++L    +RLL   D
Sbjct: 543 LQNN------SPEQLAASSQRLLAELD 563


>gi|116748324|ref|YP_845011.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Syntrophobacter fumaroxidans MPOB]
 gi|116697388|gb|ABK16576.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Syntrophobacter fumaroxidans MPOB]
          Length = 381

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 61  ERCIACKLCEAICPAQAIT--IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + CI C +C   C  +AI              + T    ID  +C+ C  C  ACP  A+
Sbjct: 193 KNCIGCGVCRDQCAHEAIELVDRPEDAPRPEPKITQMARIDPRRCVGCAACIHACPQHAL 252


>gi|108804450|ref|YP_644387.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Rubrobacter
           xylanophilus DSM 9941]
 gi|108765693|gb|ABG04575.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Rubrobacter
           xylanophilus DSM 9941]
          Length = 531

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 33/161 (20%), Positives = 47/161 (29%), Gaps = 45/161 (27%)

Query: 39  EKGSTSPRFRGEHALRRYPN------------------------GEERCIACKLCEAICP 74
           EKG      R  H +R                              +RCI CK C   CP
Sbjct: 42  EKGEFPDTQRAFHVMRCNHCEDAPCVEACPVTALYVREDGIVDFNWDRCIGCKACTQACP 101

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE----- 129
             A+ I+                   ++      C   CP  AI+ G   + A+E     
Sbjct: 102 YDALYIDPESHTAAKCNYCAHRVDMGLE----PACVNVCPEQAIISGDMDDPASEISRLL 157

Query: 130 TRQELYY------DKERL-LNNGDRWESEIVRNIVTDSPYR 163
            R+++         K +L   NGD            D+P R
Sbjct: 158 AREKVTVRRPEKGTKPKLFYINGDE-----AALTPEDAPVR 193



 Score = 42.4 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 31/94 (32%), Gaps = 17/94 (18%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQA-----ITIESGPRCHDGTRRTVRYDIDMIKCIY 105
            A   +     +CI C  C   C A+      +          G     +    +++C +
Sbjct: 1   MANYGFIIDNRKCIGCHACTVACKAEHEVPLGVNRTWVKYIEKGEFPDTQRAFHVMRCNH 60

Query: 106 C--GLCQEACPVDAIVEGPNFEFATETRQELYYD 137
           C    C EACPV A+            R++   D
Sbjct: 61  CEDAPCVEACPVTAL----------YVREDGIVD 84


>gi|313903955|ref|ZP_07837335.1| hydrogenase large subunit domain protein [Eubacterium
           cellulosolvens 6]
 gi|313471104|gb|EFR66426.1| hydrogenase large subunit domain protein [Eubacterium
           cellulosolvens 6]
          Length = 513

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 25/70 (35%), Gaps = 6/70 (8%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCG 107
            R      +C  C  C   CP  AI     P         + Y+      ID  KCI CG
Sbjct: 124 HRSHIDPTKCRECGKCAQACPYNAIVHLERPCKKACPVGAITYNEYGICIIDEEKCINCG 183

Query: 108 LCQEACPVDA 117
            C  ACP  A
Sbjct: 184 HCIHACPFGA 193



 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 13/66 (19%)

Query: 57  PNGEERCIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            +  + C  C    C+  C   AI+I +            R  ID  KC  CG C +ACP
Sbjct: 96  YSVTDNCRKCMGQACKNACKFDAISIGNH-----------RSHIDPTKCRECGKCAQACP 144

Query: 115 VDAIVE 120
            +AIV 
Sbjct: 145 YNAIVH 150


>gi|237798781|ref|ZP_04587242.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
 gi|331021634|gb|EGI01691.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           oryzae str. 1_6]
          Length = 291

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 10/75 (13%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           RG    +     E  CI C  C   CP  AI   +           + + + + +C  C 
Sbjct: 76  RGAAPAQVAFIREAECIGCTKCIQACPVDAIVGAAK----------LMHTVIIEECTGCD 125

Query: 108 LCQEACPVDAIVEGP 122
           LC   CPVD I   P
Sbjct: 126 LCVAPCPVDCIEMHP 140


>gi|224588326|gb|ACN58950.1| iron-sulfur cluster-binding protein [uncultured bacterium BLR10]
          Length = 245

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 26/74 (35%), Gaps = 10/74 (13%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C LC   CP  AI   +           + + +    C  C LC   CPVD
Sbjct: 81  YIDESLCIGCTLCIQACPVDAIIGAAK----------LMHTVVPDLCTGCDLCVNPCPVD 130

Query: 117 AIVEGPNFEFATET 130
            IV  P  E     
Sbjct: 131 CIVMHPVTETTGWN 144



 Score = 37.0 bits (84), Expect = 0.91,   Method: Composition-based stats.
 Identities = 15/28 (53%), Positives = 16/28 (57%)

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           R      ID   CI C LC +ACPVDAI
Sbjct: 75  RPRAVAYIDESLCIGCTLCIQACPVDAI 102


>gi|319937320|ref|ZP_08011727.1| NADH dehydrogenase [Coprobacillus sp. 29_1]
 gi|319807686|gb|EFW04279.1| NADH dehydrogenase [Coprobacillus sp. 29_1]
          Length = 597

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 29/68 (42%), Gaps = 9/68 (13%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            AL  Y   E++C  C LC   CPA AI  E G            Y ID  KCI CG C 
Sbjct: 536 KALLSYEIDEDKCRKCGLCARQCPANAIDGELGKVP---------YRIDQNKCIKCGNCM 586

Query: 111 EACPVDAI 118
            AC    I
Sbjct: 587 TACHFGVI 594



 Score = 38.9 bits (89), Expect = 0.22,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 18/40 (45%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            I          +  + Y+ID  KC  CGLC   CP +AI
Sbjct: 524 HIIDKKCPAGVCKALLSYEIDEDKCRKCGLCARQCPANAI 563


>gi|308162304|gb|EFO64710.1| Pyruvate-flavodoxin oxidoreductase [Giardia lamblia P15]
          Length = 1253

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 45/161 (27%), Gaps = 35/161 (21%)

Query: 5   RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64
              V  + L      F            +   P   G  S   +   A +     +E CI
Sbjct: 669 DKYVKDIILPAVTRKFANIGTKDVMKYNSGKIP---GGYSKYEKLGSAAKVPTWKKENCI 725

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK---------------------- 102
            C  C   CP  A+                 +++  +K                      
Sbjct: 726 QCGFCSVQCPHAAVRCFVMNEDAKPDNVPEDFEMLDMKGKLAAVNSDSSKIKFRVQVSPL 785

Query: 103 -CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLL 142
            C  CG+C EACP DA+   P          +   DK++ L
Sbjct: 786 DCRGCGVCVEACPKDALAMTPI---------DTVLDKQQKL 817


>gi|293377681|ref|ZP_06623870.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecium PC4.1]
 gi|292643681|gb|EFF61802.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecium PC4.1]
          Length = 1230

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 20/93 (21%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTV 94
            AL       +RC  C  C  +CP  AI                 I    R  DG +   
Sbjct: 680 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMEEAPEGFIVREMRGADGVKY-- 737

Query: 95  RYDIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125
           R  + +  C  CGLC EACP    A+V  P  E
Sbjct: 738 RIQVSVEDCTGCGLCVEACPAKGKALVMKPYEE 770


>gi|257898280|ref|ZP_05677933.1| pyruvate decarboxylase [Enterococcus faecium Com15]
 gi|257836192|gb|EEV61266.1| pyruvate decarboxylase [Enterococcus faecium Com15]
          Length = 1227

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 20/93 (21%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTV 94
            AL       +RC  C  C  +CP  AI                 I    R  DG +   
Sbjct: 677 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMEEAPEGFIVREMRGADGVKY-- 734

Query: 95  RYDIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125
           R  + +  C  CGLC EACP    A+V  P  E
Sbjct: 735 RIQVSVEDCTGCGLCVEACPAKGKALVMKPYEE 767


>gi|257895709|ref|ZP_05675362.1| pyruvate decarboxylase [Enterococcus faecium Com12]
 gi|257832274|gb|EEV58695.1| pyruvate decarboxylase [Enterococcus faecium Com12]
          Length = 1227

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 20/93 (21%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTV 94
            AL       +RC  C  C  +CP  AI                 I    R  DG +   
Sbjct: 677 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMEEAPEGFIVREMRGADGVKY-- 734

Query: 95  RYDIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125
           R  + +  C  CGLC EACP    A+V  P  E
Sbjct: 735 RIQVSVEDCTGCGLCVEACPAKGKALVMKPYEE 767


>gi|257887172|ref|ZP_05666825.1| pyruvate decarboxylase [Enterococcus faecium 1,141,733]
 gi|257823226|gb|EEV50158.1| pyruvate decarboxylase [Enterococcus faecium 1,141,733]
          Length = 1227

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 20/93 (21%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTV 94
            AL       +RC  C  C  +CP  AI                 I    R  DG +   
Sbjct: 677 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMEEAPEGFIVREMRGADGVKY-- 734

Query: 95  RYDIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125
           R  + +  C  CGLC EACP    A+V  P  E
Sbjct: 735 RIQVSVEDCTGCGLCVEACPAKGKALVMKPYEE 767


>gi|227551692|ref|ZP_03981741.1| pyruvate synthase [Enterococcus faecium TX1330]
 gi|227179133|gb|EEI60105.1| pyruvate synthase [Enterococcus faecium TX1330]
          Length = 1230

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 20/93 (21%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTV 94
            AL       +RC  C  C  +CP  AI                 I    R  DG +   
Sbjct: 680 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMEEAPEGFIVREMRGADGVKY-- 737

Query: 95  RYDIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125
           R  + +  C  CGLC EACP    A+V  P  E
Sbjct: 738 RIQVSVEDCTGCGLCVEACPAKGKALVMKPYEE 770


>gi|117617793|ref|YP_857568.1| iron-sulfur cluster-binding protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117559200|gb|ABK36148.1| iron-sulfur cluster-binding protein [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 576

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 9/70 (12%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C  C  C A+CP++A+                  +     CI CG+C++ACP  AIV  
Sbjct: 443 DCTLCMGCVAVCPSRALHAVGHAPG---------LNFIEQDCIQCGMCEKACPEQAIVLM 493

Query: 122 PNFEFATETR 131
           P  +   E R
Sbjct: 494 PRLQPVPEAR 503



 Score = 35.5 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 11/53 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C  +CP  A+   +G           R  ID   C   G C  ACP  AI
Sbjct: 216 CSRCLDVCPTDALKPING-----------RIQIDPHLCQGFGSCASACPTGAI 257



 Score = 35.5 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR--YDIDMIKCIYCG 107
           + CI C +CE  CP QAI +    +     RR V+     +   CI CG
Sbjct: 473 QDCIQCGMCEKACPEQAIVLMPRLQPVPEARRAVQSLKAEEAACCIRCG 521


>gi|323474197|gb|ADX84803.1| thiamine pyrophosphate protein domain protein TPP-binding protein
           [Sulfolobus islandicus REY15A]
          Length = 612

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 22/68 (32%), Gaps = 10/68 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L +     E+C  C +C       AI      +            ID   CI CG C   
Sbjct: 541 LPKAIVDLEKCTGCSICYDYFTCPAIIPRKDKKAE----------IDNYTCIGCGACIPV 590

Query: 113 CPVDAIVE 120
           CP  AI  
Sbjct: 591 CPFKAISL 598


>gi|312137325|ref|YP_004004662.1| glutamate synthase (nadph) gltb2 subunit [Methanothermus fervidus
           DSM 2088]
 gi|311225044|gb|ADP77900.1| glutamate synthase (NADPH) GltB2 subunit [Methanothermus fervidus
           DSM 2088]
          Length = 499

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 32/96 (33%), Gaps = 15/96 (15%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                E  C  C  C   CP     I +G            + I   +C+ C +C+E CP
Sbjct: 26  CDNRDENLCKDCFSCYNNCPHNVYEIINGEP----------FPIWHERCVGCRICEEMCP 75

Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLNNGDRWES 150
            +AI          E R+   +    L+    + E 
Sbjct: 76  NNAI----EVHAVPEDRRN-VWSYADLVEIQRKAEE 106


>gi|309379085|emb|CBX22216.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 279

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 24/64 (37%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CPA AI                 + +   +C  CGLC   CPVD I
Sbjct: 75  DETACIGCTACIRSCPADAIMGAGK----------FMHTVIADECTGCGLCVAPCPVDCI 124

Query: 119 VEGP 122
              P
Sbjct: 125 HMQP 128



 Score = 33.9 bits (76), Expect = 8.5,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIV 119
            ID   CI C  C  +CP DAI+
Sbjct: 73  RIDETACIGCTACIRSCPADAIM 95


>gi|308173196|ref|YP_003919901.1| oxidoreductase [Bacillus amyloliquefaciens DSM 7]
 gi|307606060|emb|CBI42431.1| putative oxidoreductase [Bacillus amyloliquefaciens DSM 7]
          Length = 781

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 9/101 (8%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            ++         + PF++           +   Y    ++CI C  C   C    +T   
Sbjct: 114 TVKEM--KINHQSIPFDQKPYPKD----ESNPFYRYDPDQCILCGRCVEACQDVQVTETL 167

Query: 83  GPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPVDAIVE 120
                    R +      I+   C+ CG C   CP +A++E
Sbjct: 168 SIDWDRKHPRVIWDQDVPINESSCVSCGHCSTVCPCNAMME 208



 Score = 39.3 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 21/66 (31%), Gaps = 9/66 (13%)

Query: 57  PNGEERCIAC----KLCEAICPA-----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
            N E  C  C      CE             +I    + +        Y  D  +CI CG
Sbjct: 93  HNHELYCTVCDYNNGSCEVHNTVKEMKINHQSIPFDQKPYPKDESNPFYRYDPDQCILCG 152

Query: 108 LCQEAC 113
            C EAC
Sbjct: 153 RCVEAC 158


>gi|295115323|emb|CBL36170.1| Iron only hydrogenase large subunit, C-terminal domain
           [butyrate-producing bacterium SM4/1]
          Length = 507

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQ 110
              +++CI C  C+ +C   AI ++  P                + DID  KC+ CG C 
Sbjct: 148 YIDQDKCIKCGKCKEVCGYNAIIVQERPCAAACGMDAIHSDVNGKADIDYDKCVSCGQCL 207

Query: 111 EACPVDAI 118
             CP  AI
Sbjct: 208 VNCPFGAI 215



 Score = 38.2 bits (87), Expect = 0.38,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 7/63 (11%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-------IDMIKCIYCGLCQEACPV 115
           C AC               + P      +  V  D       ID  KCI CG C+E C  
Sbjct: 107 CNACHEKRVYVTDGCQGCLAHPCVEVCPKGAVTLDRTNGRSYIDQDKCIKCGKCKEVCGY 166

Query: 116 DAI 118
           +AI
Sbjct: 167 NAI 169


>gi|256827982|ref|YP_003156710.1| formate dehydrogenase subunit alpha [Desulfomicrobium baculatum DSM
           4028]
 gi|256577158|gb|ACU88294.1| formate dehydrogenase, alpha subunit [Desulfomicrobium baculatum
           DSM 4028]
          Length = 886

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 5/88 (5%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRY 96
           FE+    PR+R E           +CI C  C   C   Q             T+     
Sbjct: 122 FERTK--PRYRPETGNPFIVRDFSKCILCGRCVQACNEVQVNEAIDFGYRGAATKIVAGC 179

Query: 97  D--IDMIKCIYCGLCQEACPVDAIVEGP 122
           D  +    C++CG C + CP  A+    
Sbjct: 180 DTTLAESDCVFCGECLQVCPTGALSMTD 207


>gi|283796610|ref|ZP_06345763.1| Fe-hydrogenase large subunit family protein [Clostridium sp. M62/1]
 gi|291076031|gb|EFE13395.1| Fe-hydrogenase large subunit family protein [Clostridium sp. M62/1]
          Length = 507

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQ 110
              +++CI C  C+ +C   AI ++  P                + DID  KC+ CG C 
Sbjct: 148 YIDQDKCIKCGKCKEVCGYNAIIVQERPCAAACGMDAIHSDVNGKADIDYDKCVSCGQCL 207

Query: 111 EACPVDAI 118
             CP  AI
Sbjct: 208 VNCPFGAI 215



 Score = 38.2 bits (87), Expect = 0.38,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 7/63 (11%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-------IDMIKCIYCGLCQEACPV 115
           C AC               + P      +  V  D       ID  KCI CG C+E C  
Sbjct: 107 CNACHEKRVYVTDGCQGCLAHPCVEVCPKGAVTLDRTNGRSYIDQDKCIKCGKCKEVCGY 166

Query: 116 DAI 118
           +AI
Sbjct: 167 NAI 169


>gi|222529694|ref|YP_002573576.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222456541|gb|ACM60803.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 339

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E+CI C LCE  CP          +  +G  +      D   C  C  C + CP  A+VE
Sbjct: 252 EKCINCGLCETTCPD--YVFVWDRKAENGKLKMFNLGPDYQYCKGCLRCVDICPTGALVE 309

Query: 121 GPNFEF 126
           G   E+
Sbjct: 310 GIEREY 315


>gi|302348411|ref|YP_003816049.1| Indolepyruvate:ferredoxin oxidoreductase (IOR), alpha subunit
           [Acidilobus saccharovorans 345-15]
 gi|302328823|gb|ADL19018.1| Indolepyruvate:ferredoxin oxidoreductase (IOR), alpha subunit
           [Acidilobus saccharovorans 345-15]
          Length = 633

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 10/63 (15%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           Y   +++C AC +C       AI ++   +            ID   C  CG+C E CP 
Sbjct: 566 YQVEDDKCTACGICYNAFSCPAIFVKDDRKA----------WIDPSLCTGCGVCAEICPY 615

Query: 116 DAI 118
            AI
Sbjct: 616 KAI 618


>gi|302343816|ref|YP_003808345.1| electron transfer flavoprotein alpha/beta-subunit [Desulfarculus
           baarsii DSM 2075]
 gi|301640429|gb|ADK85751.1| Electron transfer flavoprotein alpha/beta-subunit [Desulfarculus
           baarsii DSM 2075]
          Length = 405

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 23/72 (31%), Gaps = 15/72 (20%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +  C  C  C   CP  A+ +  G                   C  CG C +ACP  AI
Sbjct: 6   DKNLCTGCGSCVDACPFGAMELHDGVAVAG------------DGCTLCGACVDACPESAI 53

Query: 119 VEGPNFEFATET 130
                 E A E 
Sbjct: 54  GLD---EPAGEQ 62



 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 14/32 (43%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           ID   C  CG C +ACP  A+        A +
Sbjct: 5   IDKNLCTGCGSCVDACPFGAMELHDGVAVAGD 36


>gi|300814489|ref|ZP_07094750.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Peptoniphilus sp.
           oral taxon 836 str. F0141]
 gi|300511407|gb|EFK38646.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Peptoniphilus sp.
           oral taxon 836 str. F0141]
          Length = 1178

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 40/123 (32%), Gaps = 30/123 (24%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR----------- 91
           TS   +   A+       E CI C  C  +CP   I      +     +           
Sbjct: 670 TSKYEKRGIAVNVPHWKIENCIQCNQCSLVCPHAVIRPFLLDKEEAKKKPETFETMSARG 729

Query: 92  -----RTVRYDIDMIKCIYCGLCQEACP--VDAIVEGP----------NFEFATE--TRQ 132
                   R  I  + C  CG C + CP    A+V  P          N+EFAT   ++Q
Sbjct: 730 KGLTDYEFRIQISPLDCTGCGNCAQVCPAKEKALVMTPYEKELEVQAINWEFATTVKSKQ 789

Query: 133 ELY 135
           +  
Sbjct: 790 DNI 792


>gi|170733685|ref|YP_001765632.1| ferredoxin [Burkholderia cenocepacia MC0-3]
 gi|169816927|gb|ACA91510.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           cenocepacia MC0-3]
          Length = 306

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 22/66 (33%), Gaps = 10/66 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C LC   CP  AI                 + I    C  C LC   CPVD
Sbjct: 81  FIDENLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVASLCTGCDLCIPPCPVD 130

Query: 117 AIVEGP 122
            I   P
Sbjct: 131 CIAMLP 136


>gi|168205840|ref|ZP_02631845.1| [Fe] hydrogenase [Clostridium perfringens E str. JGS1987]
 gi|170662681|gb|EDT15364.1| [Fe] hydrogenase [Clostridium perfringens E str. JGS1987]
          Length = 490

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 7/68 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-------IDMIKCIYCGLCQE 111
             E+C  C  C+ +CP  AI     P       + + YD       ID  KCI CG C  
Sbjct: 133 DYEKCKECGKCKEVCPYNAIAEVKRPCMRACIPKALSYDVDSKKAVIDDSKCIQCGACVV 192

Query: 112 ACPVDAIV 119
            CP  AI+
Sbjct: 193 DCPFGAIM 200



 Score = 40.5 bits (93), Expect = 0.071,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 3/70 (4%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +        R I    C      +     +        R+     ID  KC  CG C+E 
Sbjct: 90  IACDECPVNRFIVTDACRGCLAKKCRDSCNFGAISFDNRKCK---IDYEKCKECGKCKEV 146

Query: 113 CPVDAIVEGP 122
           CP +AI E  
Sbjct: 147 CPYNAIAEVK 156


>gi|28210852|ref|NP_781796.1| pyruvate-flavodoxin oxidoreductase [Clostridium tetani E88]
 gi|28203291|gb|AAO35733.1| pyruvate-flavodoxin oxidoreductase [Clostridium tetani E88]
          Length = 1175

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/121 (23%), Positives = 39/121 (32%), Gaps = 34/121 (28%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG   +       E+CI C  C  ICP               +A       +        
Sbjct: 675 RGIAVMVPQWQ-IEKCIQCNQCSYICPHAVIRPFLVTEEEQNRAPKTFETKKAVGKGFEN 733

Query: 94  VRYDID--MIKCIYCGLCQEACPV--DAIVEGP----------NFEFATETRQELYYDKE 139
             Y I    + C  CG C + CP    A+V  P          N+EFA        Y+KE
Sbjct: 734 YGYRIQVSPLDCTGCGNCADVCPALGKALVMQPAEQEIENQVDNWEFAVT-----LYEKE 788

Query: 140 R 140
           +
Sbjct: 789 K 789


>gi|302342222|ref|YP_003806751.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075]
 gi|301638835|gb|ADK84157.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075]
          Length = 633

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 15/100 (15%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
             L+Y F+ +   +   +K            L  +    ++C  C  C  +CP  A++ E
Sbjct: 549 TTLKY-FRDEYLAHITDKKCPAGVC----KELITFAIDVDKCTGCGSCARLCPQSAVSGE 603

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
                         + ID   CI CG+C ++C   A+V  
Sbjct: 604 KKKP----------HQIDQSLCIRCGVCYDSCKFGAVVIS 633


>gi|299135121|ref|ZP_07028312.1| molybdopterin oxidoreductase Fe4S4 region [Afipia sp. 1NLS2]
 gi|298590098|gb|EFI50302.1| molybdopterin oxidoreductase Fe4S4 region [Afipia sp. 1NLS2]
          Length = 308

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 4/75 (5%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT----VRYDIDMIKCIYCGLCQE 111
           Y    ++CI C  C   C  Q     +      G           ++    C++CG C E
Sbjct: 162 YVREYDKCILCYKCVDACGTQWQNSFAIQIAGRGFDSQISTEFAVELPESACVFCGNCVE 221

Query: 112 ACPVDAIVEGPNFEF 126
            CP  A+     ++ 
Sbjct: 222 VCPTGALSFKSEYDM 236


>gi|288817439|ref|YP_003431786.1| NADH dehydrogenase I chain G [Hydrogenobacter thermophilus TK-6]
 gi|288786838|dbj|BAI68585.1| NADH dehydrogenase I chain G [Hydrogenobacter thermophilus TK-6]
 gi|308751046|gb|ADO44529.1| ferredoxin [Hydrogenobacter thermophilus TK-6]
          Length = 627

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 61  ERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            RC+ C  C  +C     A  +    R            ID   C  CGLC   CPV AI
Sbjct: 150 NRCVVCYRCTRVCDDVNGARALYVEERGFHTNIVPTVRPIDTSSCEMCGLCVHVCPVGAI 209

Query: 119 VEGP 122
           +  P
Sbjct: 210 ISKP 213


>gi|317153654|ref|YP_004121702.1| cobyrinic acid ac-diamide synthase [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316943905|gb|ADU62956.1| cobyrinic acid ac-diamide synthase [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 299

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 6/66 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E CI C  C  +C   AI         D     + Y +   +C  C +C E CP  AI
Sbjct: 64  DPEACIGCGQCAELCRFDAI------AGPDCNHPGIAYRVLPFRCEGCKVCVELCPAKAI 117

Query: 119 VEGPNF 124
                 
Sbjct: 118 AFPQRH 123



 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 14/38 (36%)

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           +   +            ID   CI CG C E C  DAI
Sbjct: 46  DPRHKVEHEFHSGNEAVIDPEACIGCGQCAELCRFDAI 83


>gi|254491482|ref|ZP_05104661.1| 4Fe-4S binding domain protein [Methylophaga thiooxidans DMS010]
 gi|224462960|gb|EEF79230.1| 4Fe-4S binding domain protein [Methylophaga thiooxydans DMS010]
          Length = 517

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 10/82 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++ C  C  C ++CP  A+                + +     C+ CG+C  ACP DAI
Sbjct: 391 DKQACTLCMSCVSVCPVGAVVDGVDK---------PQLNFIEDLCVQCGICDTACPEDAI 441

Query: 119 VEGPNFEFATET-RQELYYDKE 139
              P + F  E  RQ+   ++E
Sbjct: 442 TLSPRYLFEREQARQKRILNEE 463



 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 10/53 (18%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C   CPA A+                  +++   C  CG C   CP  AI
Sbjct: 160 CTNCIDACPAGAVESSG----------WDLINVNPSLCQGCGSCTVVCPSGAI 202


>gi|221211649|ref|ZP_03584628.1| electron transport complex, rnfaBcdge type, b subunit [Burkholderia
           multivorans CGD1]
 gi|221169010|gb|EEE01478.1| electron transport complex, rnfaBcdge type, b subunit [Burkholderia
           multivorans CGD1]
          Length = 288

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 22/67 (32%), Gaps = 10/67 (14%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C LC   CP  AI                 + I    C  C LC   CPVD
Sbjct: 81  FIDENLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVASLCTGCDLCVPPCPVD 130

Query: 117 AIVEGPN 123
            I   P 
Sbjct: 131 CIAMVPI 137


>gi|157375071|ref|YP_001473671.1| pyridine nucleotide-disulphide oxidoreductase [Shewanella sediminis
           HAW-EB3]
 gi|157317445|gb|ABV36543.1| pyridine nucleotide-disulphide oxidoreductase [Shewanella sediminis
           HAW-EB3]
          Length = 895

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 37/115 (32%), Gaps = 13/115 (11%)

Query: 30  AKTTINYPFE---KGSTSPRFRGEHALRRYPNGEERCIACKL-CEAICPAQAITIESGPR 85
            K T    FE   K   +                  C  C   C A+  A         +
Sbjct: 221 RKITREDAFEVIRKAEENGLMHSMPNFDGSGETHAICNCCGCGCFALRLAGMW------Q 274

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP---NFEFATETRQELYYD 137
             D  R      ID  +C+ CG C E CP +A+  G        A   +++L +D
Sbjct: 275 NPDMVRSNYVVKIDAEQCVACGECVEVCPTNALKLGQKLCEISPAKTAKRDLPHD 329


>gi|42782638|ref|NP_979885.1| molybdopterin oxidoreductase family protein [Bacillus cereus ATCC
           10987]
 gi|42738564|gb|AAS42493.1| molybdopterin oxidoreductase family protein [Bacillus cereus ATCC
           10987]
          Length = 1012

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+E          +     Y     +CIAC  C  +C    +             R
Sbjct: 156 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 213

Query: 93  TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120
            +     +I+   C+ CG C   CP +A++E
Sbjct: 214 VIWDEGVNINDSSCVSCGQCVTICPCNALME 244



 Score = 39.3 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 124 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 183

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 184 CIACGQCVEVC 194


>gi|20093705|ref|NP_613552.1| heterodisulfide reductase, subunit A, polyferredoxin [Methanopyrus
           kandleri AV19]
 gi|41017082|sp|P96801|HDRA2_METKA RecName: Full=CoB--CoM heterodisulfide reductase iron-sulfur
           subunit A 2
 gi|1890204|emb|CAA70999.1| heterodisulfide reductase [Methanopyrus kandleri]
 gi|19886593|gb|AAM01482.1| Heterodisulfide reductase, subunit A, polyferredoxin [Methanopyrus
           kandleri AV19]
          Length = 656

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 27/80 (33%), Gaps = 7/80 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAIT-------IESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
              E+ C  C  C  +CP +          +               + ID   CI CGLC
Sbjct: 242 YVDEDACTGCGACAEVCPIEVPNEFDEGLGMRKAIYKPFPQAVPSVFTIDEEHCIRCGLC 301

Query: 110 QEACPVDAIVEGPNFEFATE 129
           +E C  DAI      E   E
Sbjct: 302 EEVCDADAIDFDQEPEIVEE 321



 Score = 39.7 bits (91), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 7/64 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            EE C  C  C  +CP  AI +             +  ++    C  CG C  ACP  A+
Sbjct: 582 DEEICGGCGTCVELCPYGAIELVEKD-------GKLVAEVTAALCKGCGTCAAACPSGAM 634

Query: 119 VEGP 122
            +  
Sbjct: 635 EQNH 638



 Score = 35.1 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 20/48 (41%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103
           +   EE CI C LCE +C A AI  +  P   +     +   I    C
Sbjct: 288 FTIDEEHCIRCGLCEEVCDADAIDFDQEPEIVEEEVGAIICAIGYDTC 335


>gi|18311557|ref|NP_563491.1| [Fe] hydrogenase [Clostridium perfringens str. 13]
 gi|168213503|ref|ZP_02639128.1| [Fe] hydrogenase [Clostridium perfringens CPE str. F4969]
 gi|168217341|ref|ZP_02642966.1| [Fe] hydrogenase [Clostridium perfringens NCTC 8239]
 gi|18146241|dbj|BAB82281.1| probable hydrogenase [Clostridium perfringens str. 13]
 gi|170715055|gb|EDT27237.1| [Fe] hydrogenase [Clostridium perfringens CPE str. F4969]
 gi|182380626|gb|EDT78105.1| [Fe] hydrogenase [Clostridium perfringens NCTC 8239]
          Length = 490

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 7/68 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-------IDMIKCIYCGLCQE 111
             E+C  C  C+ +CP  AI     P       + + YD       ID  KCI CG C  
Sbjct: 133 DYEKCKECGKCKEVCPYNAIAEVKRPCMRACIPKALSYDVDSKKAVIDDSKCIQCGACVV 192

Query: 112 ACPVDAIV 119
            CP  AI+
Sbjct: 193 DCPFGAIM 200



 Score = 40.5 bits (93), Expect = 0.072,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 3/70 (4%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +        R I    C      +     +        R+     ID  KC  CG C+E 
Sbjct: 90  IACDECPVNRFIVTDACRGCLAKKCRDSCNFGAISFDNRKCK---IDYEKCKECGKCKEV 146

Query: 113 CPVDAIVEGP 122
           CP +AI E  
Sbjct: 147 CPYNAIAEVK 156


>gi|323141631|ref|ZP_08076513.1| putative ferredoxin hydrogenase HydA1 [Phascolarctobacterium sp.
           YIT 12067]
 gi|322413896|gb|EFY04733.1| putative ferredoxin hydrogenase HydA1 [Phascolarctobacterium sp.
           YIT 12067]
          Length = 575

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 59  GEERCIACKLCEAICPA---QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
            +E+CI C  C  +C      ++   +G   +        +D+    C YCG C + CP 
Sbjct: 146 DQEKCILCGRCIRVCRDVQGMSVYSFAGRGFNTMVSTAFEHDLLNSACTYCGQCADVCPT 205

Query: 116 DAIVEGPN 123
            AIVE  +
Sbjct: 206 GAIVEKDD 213


>gi|313888440|ref|ZP_07822107.1| pyruvate synthase [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312845469|gb|EFR32863.1| pyruvate synthase [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 1178

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 35/110 (31%), Gaps = 29/110 (26%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGT-----------R 91
           RG      +    E CI C  C  +CP   I       E      +G             
Sbjct: 676 RGIAVNVPHWK-SENCIQCNQCSLVCPHAVIRPFLADEEEKANAPEGFETIKARGKGLEN 734

Query: 92  RTVRYDIDMIKCIYCGLCQEACP--VDAIVEGP----------NFEFATE 129
              R  I  + C  CG C + CP    A+V  P          N+E+A E
Sbjct: 735 YEYRMQISPLDCTGCGNCAQVCPAKEKALVMSPFENELDVQAANWEYAFE 784


>gi|301055059|ref|YP_003793270.1| formate dehydrogenase subunit alpha [Bacillus anthracis CI]
 gi|300377228|gb|ADK06132.1| formate dehydrogenase, alpha subunit [Bacillus cereus biovar
           anthracis str. CI]
          Length = 979

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 7/92 (7%)

Query: 33  TINYPFE-KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
              YP+E K   S           Y     +CIAC  C  +C    +             
Sbjct: 123 HQKYPYEPKVDVSEVDMTHP---FYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERP 179

Query: 92  RTVRYD---IDMIKCIYCGLCQEACPVDAIVE 120
           R +  +   I+   C+ CG C   CP +A++E
Sbjct: 180 RVIWDEGVSINDSSCVSCGQCVTICPCNALME 211



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 91  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|293571875|ref|ZP_06682891.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecium E980]
 gi|291608129|gb|EFF37435.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecium E980]
          Length = 1230

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 20/93 (21%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTV 94
            AL       +RC  C  C  +CP  AI                 I    R  DG +   
Sbjct: 680 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMEEAPEGFIVREMRGVDGVKY-- 737

Query: 95  RYDIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125
           R  + +  C  CGLC EACP    A+V  P  E
Sbjct: 738 RIQVSVEDCTGCGLCVEACPAKGKALVMKPYEE 770


>gi|291460311|ref|ZP_06599701.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Oribacterium sp.
           oral taxon 078 str. F0262]
 gi|291417066|gb|EFE90785.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Oribacterium sp.
           oral taxon 078 str. F0262]
          Length = 1177

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 34/118 (28%), Gaps = 24/118 (20%)

Query: 31  KTTINYPFEKGSTSP-----RFRGEHALRRYPNGEERCIACKLCEAICPA---------- 75
             +   P+  GST         RG        N  + CI C  C  +CP           
Sbjct: 659 PVSAFLPYADGSTPSGTAAYEKRGIAVNVPSWN-PDNCIQCNFCSYVCPHAAIRPFAYTE 717

Query: 76  ----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD----AIVEGPNFE 125
               +A   +                + ++ C+ CG C   CP      A+   P  E
Sbjct: 718 EEASKAPEGDVTKPMTGMPAYKFGIKVSVMDCVGCGSCANVCPGMKGQKALTMTPIAE 775


>gi|256751588|ref|ZP_05492464.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256749538|gb|EEU62566.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 1175

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 53/143 (37%), Gaps = 31/143 (21%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTRRTV 94
            G+ +   RG           + CI C  C  +CP  AI     T E      +G +   
Sbjct: 667 PGTAAYEKRGIAVDVPEWQ-IDNCIQCNQCAFVCPHAAIRPFLLTEEEVKNAPEGFKVKK 725

Query: 95  -----------RYDIDMIKCIYCGLCQEACP--VDAIVEGP---------NFEFATE-TR 131
                      R  + ++ C  CG+C   CP    A+V  P         N+E+A   + 
Sbjct: 726 AIGKGFEGLYYRIQVSVLDCTGCGVCANECPAKEKALVMNPLETQMEEAKNWEYAMTLSP 785

Query: 132 QELYYDKERLLNNGDRWESEIVR 154
           +E   +KE     G ++E+ ++ 
Sbjct: 786 KENPMNKE--TVKGSQFETPLLE 806


>gi|281420085|ref|ZP_06251084.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Prevotella copri
           DSM 18205]
 gi|281405885|gb|EFB36565.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Prevotella copri
           DSM 18205]
          Length = 1192

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 46/142 (32%), Gaps = 32/142 (22%)

Query: 28  FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------- 80
           F    T++  ++ G+ +   RG  A     N  E CI C  C  +CP  AI         
Sbjct: 658 FVKHNTVDGTWQNGTAAFEKRGVEAFVPVWN-VENCIQCNKCSFVCPHAAIRPFVLTDEE 716

Query: 81  ---------ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP----VDAIVEGPNFEFA 127
                    +             R +I ++ C+ CG C + CP      A+   P     
Sbjct: 717 LAGIEGLKTQDVKAPKALAGMHFRIEISVLDCLGCGNCADVCPGKKGEKALTMVP----- 771

Query: 128 TETRQELYYDKERLLNNGDRWE 149
                    D E ++     WE
Sbjct: 772 ------FNVDAEDMVKEAANWE 787


>gi|182624288|ref|ZP_02952073.1| [Fe] hydrogenase [Clostridium perfringens D str. JGS1721]
 gi|177910506|gb|EDT72879.1| [Fe] hydrogenase [Clostridium perfringens D str. JGS1721]
          Length = 490

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 7/68 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-------IDMIKCIYCGLCQE 111
             E+C  C  C+ +CP  AI     P       + + YD       ID  KCI CG C  
Sbjct: 133 DYEKCKECGKCKEVCPYNAIAEVKRPCMRACIPKALSYDVDSKKAVIDDSKCIQCGACVV 192

Query: 112 ACPVDAIV 119
            CP  AI+
Sbjct: 193 DCPFGAIM 200



 Score = 40.5 bits (93), Expect = 0.072,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 3/70 (4%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +        R I    C      +     +        R+     ID  KC  CG C+E 
Sbjct: 90  IACDECPVNRFIVTDACRGCLAKKCRDSCNFGAISFDNRKCK---IDYEKCKECGKCKEV 146

Query: 113 CPVDAIVEGP 122
           CP +AI E  
Sbjct: 147 CPYNAIAEVK 156


>gi|154249675|ref|YP_001410500.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1]
 gi|154153611|gb|ABS60843.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1]
          Length = 610

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 10/68 (14%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            A   Y    E+C+ C  C  +CP  AI  E              ++ID   C+ CG C 
Sbjct: 540 KAFISYVISPEKCVGCTACARVCPTNAIHGE----------VRKVHEIDQEACVRCGSCI 589

Query: 111 EACPVDAI 118
           E C   AI
Sbjct: 590 EVCRFGAI 597



 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 10/41 (24%), Positives = 16/41 (39%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            ++         +  + Y I   KC+ C  C   CP +AI 
Sbjct: 528 HVKDNICPAKKCKAFISYVISPEKCVGCTACARVCPTNAIH 568


>gi|117626444|ref|YP_859767.1| putative pyruvate-formate lyase-activating enzyme [Escherichia coli
           APEC O1]
 gi|115515568|gb|ABJ03643.1| putative pyruvate-formate lyase-activating enzyme [Escherichia coli
           APEC O1]
          Length = 305

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 28/77 (36%), Gaps = 15/77 (19%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103
               R    L    N    CI C  C   CP QA++  +             + I+  +C
Sbjct: 45  PESQRHSPELLFKKND---CIRCGKCIDACPQQALSTTNA------------WFINRDRC 89

Query: 104 IYCGLCQEACPVDAIVE 120
           I CG C E CP  A+  
Sbjct: 90  IQCGKCTEICPTRALEM 106


>gi|308271659|emb|CBX28267.1| hypothetical protein N47_G35910 [uncultured Desulfobacterium sp.]
          Length = 1465

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 24/67 (35%), Gaps = 6/67 (8%)

Query: 59   GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E +CI C LCE  C   AI      R      +  R       C  CG+C   CP  AI
Sbjct: 1391 DEGKCIGCGLCEQSCAFGAI------RLKQVHGKGYRAGNYSALCKGCGVCAAGCPQRAI 1444

Query: 119  VEGPNFE 125
                  E
Sbjct: 1445 DMKHFSE 1451



 Score = 35.5 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 3/35 (8%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           ID+ KC  CG C + CPV        ++     R+
Sbjct: 86  IDLSKCTSCGDCAKVCPVT---LPNEYDETLSERK 117


>gi|307944819|ref|ZP_07660157.1| dihydropyrimidine dehydrogenase [NADP+] [Roseibium sp. TrichSKD4]
 gi|307772033|gb|EFO31256.1| dihydropyrimidine dehydrogenase [NADP+] [Roseibium sp. TrichSKD4]
          Length = 437

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           +    + + +    ++ CI C  C   C     + ++     +G R    +++   +C+ 
Sbjct: 329 QHLNLNYIAKAKIDQDLCIKCGRCHIACED--TSHQAITNLVNGVR---HFEVIDEECVG 383

Query: 106 CGLCQEACPV-DAIVEGPNFEFATETR 131
           C LC   CPV + I   P    + + R
Sbjct: 384 CNLCVNVCPVENCITMEPMAAGSVDPR 410


>gi|229083820|ref|ZP_04216131.1| formate dehydrogenase [Bacillus cereus Rock3-44]
 gi|228699477|gb|EEL52151.1| formate dehydrogenase [Bacillus cereus Rock3-44]
          Length = 980

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E   ++     +     Y     +CIAC  C  +C    +             R +
Sbjct: 125 KYPYEPKVSAKEV--DMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWSLDRPRVI 182

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
                 I+   C+ CG C   CP +A++E
Sbjct: 183 WDTGVSINDSSCVSCGQCVTVCPCNALME 211



 Score = 40.1 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSAKEVDMTHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|195952802|ref|YP_002121092.1| ferredoxin [Hydrogenobaculum sp. Y04AAS1]
 gi|195932414|gb|ACG57114.1| ferredoxin [Hydrogenobaculum sp. Y04AAS1]
          Length = 622

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 5/81 (6%)

Query: 61  ERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            RC+ C  C  +C    +A  +    R  D         ID   C  CG+C + CPV AI
Sbjct: 149 NRCVVCYRCTRVCDYINKAKALYVEERGFDSNIVPTVRPIDTSSCDMCGMCVDVCPVGAI 208

Query: 119 VEGPNFEFATETRQELYYDKE 139
           +  P   F   +R  L  ++E
Sbjct: 209 ISKP---FKFWSRSWLLKNEE 226


>gi|163119487|ref|YP_079382.2| iron-sulfur binding domain-containing protein [Bacillus
           licheniformis ATCC 14580]
 gi|145902994|gb|AAU23744.2| iron-sulfur binding domain containing protein [Bacillus
           licheniformis ATCC 14580]
          Length = 985

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 9/101 (8%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            ++         + PF++      +  + +   Y    ++CI C  C   C    +T   
Sbjct: 114 TVKEM--KVNHQSIPFDQKP----YHKDESNPFYRYDPDQCILCGRCVEACQDVQVTETL 167

Query: 83  GPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPVDAIVE 120
                    R +  +   I+   C+ CG C   CP +A++E
Sbjct: 168 TIDWERKRPRVIWDNDVPINESSCVSCGHCSTVCPCNAMME 208



 Score = 40.9 bits (94), Expect = 0.066,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 21/66 (31%), Gaps = 9/66 (13%)

Query: 57  PNGEERCIAC----KLCEAI-----CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
            N E  C  C      CE             +I    + +        Y  D  +CI CG
Sbjct: 93  YNHELYCTVCDYNNGGCEIHNTVKEMKVNHQSIPFDQKPYHKDESNPFYRYDPDQCILCG 152

Query: 108 LCQEAC 113
            C EAC
Sbjct: 153 RCVEAC 158


>gi|49481746|ref|YP_037653.1| formate dehydrogenase subunit alpha [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49333302|gb|AAT63948.1| formate dehydrogenase, alpha subunit [Bacillus thuringiensis
           serovar konkukian str. 97-27]
          Length = 979

 Score = 50.5 bits (119), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 7/92 (7%)

Query: 33  TINYPFE-KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
              YP+E K   S           Y     +CIAC  C  +C    +             
Sbjct: 123 HQKYPYEPKVDVSEVDMTHP---FYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERP 179

Query: 92  RTVRYD---IDMIKCIYCGLCQEACPVDAIVE 120
           R +  +   I+   C+ CG C   CP +A++E
Sbjct: 180 RVIWDEGVSINDSSCVSCGQCVTICPCNALME 211



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 91  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|302344645|ref|YP_003809174.1| nitroreductase [Desulfarculus baarsii DSM 2075]
 gi|301641258|gb|ADK86580.1| nitroreductase [Desulfarculus baarsii DSM 2075]
          Length = 304

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 11/60 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++CI C  C   CPAQA T+ +G     G R           CI CG C   CP  A+
Sbjct: 10  DAQKCIGCGRCVVTCPAQAFTLAAGKSVVSGQR-----------CILCGHCLAVCPTGAV 58



 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 13/31 (41%)

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             R +   ID  KCI CG C   CP  A   
Sbjct: 1   MDRQISTVIDAQKCIGCGRCVVTCPAQAFTL 31


>gi|153000587|ref|YP_001366268.1| electron transport complex protein RnfC [Shewanella baltica OS185]
 gi|151365205|gb|ABS08205.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella
           baltica OS185]
          Length = 885

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 11/109 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114
            E+ CI C  C   CPA        P+      +   YD     ++  CI CG C   CP
Sbjct: 375 EEKACIRCGECATACPA-----LLLPQQLFWHAKAEEYDKAASYNLKDCIECGCCSYVCP 429

Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
              I     +  A    +    +K++      R+++ + R +  +   R
Sbjct: 430 -SDIPLVEYYRIAKSALKHAADEKQQAERAKQRFDARLAR-LEEEKLAR 476


>gi|89896304|ref|YP_519791.1| hypothetical protein DSY3558 [Desulfitobacterium hafniense Y51]
 gi|89335752|dbj|BAE85347.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 273

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/108 (25%), Positives = 38/108 (35%), Gaps = 16/108 (14%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 E+CI C LC   C    I I  G              I   +C+ CG C   CP
Sbjct: 1   MVNIDSEKCIGCGLCVRDCFPGKIVIVEGKA-----------QIKNKQCMQCGHCIAICP 49

Query: 115 VDAIVEGPNFEFAT---ETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
            DA+     +  A      R+E   D + LL N  ++     + I  +
Sbjct: 50  QDAVSMI-EYNMAEVKAYDRREFSVDADILL-NFIKYRRSCRQFIDKE 95


>gi|229042448|ref|ZP_04190194.1| formate dehydrogenase [Bacillus cereus AH676]
 gi|228726902|gb|EEL78113.1| formate dehydrogenase [Bacillus cereus AH676]
          Length = 978

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +             R +
Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
             +   I+   C+ CG C   CP +A++E
Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211



 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|229108197|ref|ZP_04237819.1| formate dehydrogenase [Bacillus cereus Rock1-15]
 gi|229143315|ref|ZP_04271746.1| formate dehydrogenase [Bacillus cereus BDRD-ST24]
 gi|228640122|gb|EEK96521.1| formate dehydrogenase [Bacillus cereus BDRD-ST24]
 gi|228675213|gb|EEL30435.1| formate dehydrogenase [Bacillus cereus Rock1-15]
          Length = 978

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +             R +
Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
             +   I+   C+ CG C   CP +A++E
Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211



 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|228951082|ref|ZP_04113200.1| formate dehydrogenase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228808599|gb|EEM55100.1| formate dehydrogenase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 978

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +             R +
Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
             +   I+   C+ CG C   CP +A++E
Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211



 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|218283672|ref|ZP_03489633.1| hypothetical protein EUBIFOR_02227 [Eubacterium biforme DSM 3989]
 gi|218215661|gb|EEC89199.1| hypothetical protein EUBIFOR_02227 [Eubacterium biforme DSM 3989]
          Length = 505

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110
              +E+CI C  C   CP  AIT    P         ++ D      ID  KC+ CG+C 
Sbjct: 146 CIDQEKCIKCGRCMDACPYHAITKLERPCAASCGMDAIKSDADGKAEIDYDKCVSCGMCL 205

Query: 111 EACPVDAI 118
             CP  AI
Sbjct: 206 VNCPFGAI 213



 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 21/61 (34%), Gaps = 5/61 (8%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-----DIDMIKCIYCGLCQEACPVDA 117
           C AC   +           S        +  +        ID  KCI CG C +ACP  A
Sbjct: 107 CNACPEKKVFVTNACQGCLSHQCTEVCPKDAIHIVNGKSCIDQEKCIKCGRCMDACPYHA 166

Query: 118 I 118
           I
Sbjct: 167 I 167


>gi|157370479|ref|YP_001478468.1| RnfABCDGE type electron transport complex subunit C [Serratia
           proteamaculans 568]
 gi|166991048|sp|A8GE00|RNFC_SERP5 RecName: Full=Electron transport complex protein rnfC
 gi|157322243|gb|ABV41340.1| electron transport complex, RnfABCDGE type, C subunit [Serratia
           proteamaculans 568]
          Length = 703

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 3/107 (2%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E+ CI C LC   CPA  +  +       G       + ++  CI CG C   CP  
Sbjct: 371 QEQEQSCIRCGLCVDACPAG-LLPQQLYWFSRGEEHEKARNHNLFDCIECGACAFVCP-S 428

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            I     +       + +  +  R      R+E+++ R +  +   R
Sbjct: 429 NIPLVQYYRQEKAEIKAIDLEAARTAEAKARYEAKLAR-LEREKLAR 474


>gi|65320849|ref|ZP_00393808.1| COG3383: Uncharacterized anaerobic dehydrogenase [Bacillus
           anthracis str. A2012]
          Length = 975

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 7/92 (7%)

Query: 33  TINYPFE-KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
              YP+E K   S           Y     +CIAC  C  +C    +             
Sbjct: 119 HQKYPYEPKVDVSEVDMTHP---FYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERP 175

Query: 92  RTVRYD---IDMIKCIYCGLCQEACPVDAIVE 120
           R +  +   I+   C+ CG C   CP +A++E
Sbjct: 176 RVIWDEGVSINDSSCVSCGQCVTICPCNALME 207



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 87  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 146

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 147 CIACGQCVEVC 157


>gi|310778339|ref|YP_003966672.1| electron transport complex, RnfABCDGE type, C subunit [Ilyobacter
           polytropus DSM 2926]
 gi|309747662|gb|ADO82324.1| electron transport complex, RnfABCDGE type, C subunit [Ilyobacter
           polytropus DSM 2926]
          Length = 438

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 29/81 (35%), Gaps = 3/81 (3%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEER---CIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            EK +      G  AL +    E     CI C  C  +CP   + +        G    +
Sbjct: 336 DEKENLKKGTGGILALLKDECNEYETKACINCGACVDVCPMGLMPLRYVELARKGDYSRM 395

Query: 95  RYDIDMIKCIYCGLCQEACPV 115
                +  CI CG C+ ACP 
Sbjct: 396 EKRYSLSSCIKCGCCEYACPT 416


>gi|309777113|ref|ZP_07672077.1| putative [Fe] hydrogenase, large subunit HymC [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308915122|gb|EFP60898.1| putative [Fe] hydrogenase, large subunit HymC [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 572

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 9/62 (14%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C  C  +C           +   G    +    D   CI+CG C   CP  AI E  
Sbjct: 27  CIRCGQCRDVCQ---------KQISVGHHYDLVKTGDTAICIHCGQCANVCPTGAITEIQ 77

Query: 123 NF 124
           ++
Sbjct: 78  DW 79


>gi|284048866|ref|YP_003399205.1| hydrogenase large subunit domain protein [Acidaminococcus
           fermentans DSM 20731]
 gi|283953087|gb|ADB47890.1| hydrogenase large subunit domain protein [Acidaminococcus
           fermentans DSM 20731]
          Length = 504

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQ 110
               + CI C  C+  CP  A+   + P  +          +  + +ID   C+ CG C+
Sbjct: 136 HIDYDMCIECGNCKRACPYGAVVEIARPCENACKVHALHTGKNKKAEIDKNICVECGACR 195

Query: 111 EACPVDAIVE 120
            ACP  AI E
Sbjct: 196 GACPFGAIEE 205



 Score = 37.4 bits (85), Expect = 0.63,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 8/86 (9%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERC-----IACKLCEAICPAQAITIESGPRCHDGTRRTV 94
           K +T P  R +H +   P     C     +   +C      + +                
Sbjct: 77  KATTEPVDRTQHVIAVLPEACSACPVNKYMITDVCRRCLTHRCMNGCPKKAISV---YQG 133

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVE 120
           R  ID   CI CG C+ ACP  A+VE
Sbjct: 134 RAHIDYDMCIECGNCKRACPYGAVVE 159


>gi|228957009|ref|ZP_04118784.1| formate dehydrogenase [Bacillus thuringiensis serovar pakistani
           str. T13001]
 gi|228802640|gb|EEM49482.1| formate dehydrogenase [Bacillus thuringiensis serovar pakistani
           str. T13001]
          Length = 978

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +             R +
Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
             +   I+   C+ CG C   CP +A++E
Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211



 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|228995922|ref|ZP_04155580.1| formate dehydrogenase [Bacillus mycoides Rock3-17]
 gi|228763894|gb|EEM12783.1| formate dehydrogenase [Bacillus mycoides Rock3-17]
          Length = 980

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E   ++     +     Y     +CIAC  C  +C    +             R +
Sbjct: 125 KYPYEPKVSAKEV--DMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWSLDRPRVI 182

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
             +   I+   C+ CG C   CP +A++E
Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211



 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSAKEVDMTHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|228989723|ref|ZP_04149705.1| formate dehydrogenase [Bacillus pseudomycoides DSM 12442]
 gi|229003539|ref|ZP_04161357.1| formate dehydrogenase [Bacillus mycoides Rock1-4]
 gi|228757777|gb|EEM07004.1| formate dehydrogenase [Bacillus mycoides Rock1-4]
 gi|228770057|gb|EEM18639.1| formate dehydrogenase [Bacillus pseudomycoides DSM 12442]
          Length = 980

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E   ++     +     Y     +CIAC  C  +C    +             R +
Sbjct: 125 KYPYEPKVSAKEV--DMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWSLDRPRVI 182

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
             +   I+   C+ CG C   CP +A++E
Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211



 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSAKEVDMTHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|229068276|ref|ZP_04201579.1| formate dehydrogenase [Bacillus cereus F65185]
 gi|228714737|gb|EEL66609.1| formate dehydrogenase [Bacillus cereus F65185]
          Length = 978

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +             R +
Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
             +   I+   C+ CG C   CP +A++E
Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211



 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|229077902|ref|ZP_04210513.1| formate dehydrogenase [Bacillus cereus Rock4-2]
 gi|228705420|gb|EEL57795.1| formate dehydrogenase [Bacillus cereus Rock4-2]
          Length = 978

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +             R +
Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
             +   I+   C+ CG C   CP +A++E
Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211



 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|168209817|ref|ZP_02635442.1| [Fe] hydrogenase [Clostridium perfringens B str. ATCC 3626]
 gi|170712096|gb|EDT24278.1| [Fe] hydrogenase [Clostridium perfringens B str. ATCC 3626]
          Length = 490

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 7/68 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-------IDMIKCIYCGLCQE 111
             E+C  C  C+ +CP  AI     P       + + YD       ID  KCI CG C  
Sbjct: 133 DYEKCKECGKCKEVCPYNAIAEVKRPCMRACIPKALSYDVDSKKAVIDDSKCIQCGACVV 192

Query: 112 ACPVDAIV 119
            CP  AI+
Sbjct: 193 DCPFGAIM 200



 Score = 40.5 bits (93), Expect = 0.072,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 3/70 (4%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +        R I    C      +     +        R+     ID  KC  CG C+E 
Sbjct: 90  IACDECPVNRFIVTDACRGCLAKKCRDSCNFGAISFDNRKCK---IDYEKCKECGKCKEV 146

Query: 113 CPVDAIVEGP 122
           CP +AI E  
Sbjct: 147 CPYNAIAEVK 156


>gi|116749582|ref|YP_846269.1| molybdopterin oxidoreductase [Syntrophobacter fumaroxidans MPOB]
 gi|116698646|gb|ABK17834.1| molybdopterin oxidoreductase [Syntrophobacter fumaroxidans MPOB]
          Length = 880

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 6/91 (6%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTR 91
           I++P+       R R E A R +    + C+ C  C  +C     A  I    +      
Sbjct: 117 IDFPY-SPEEFGRHRAEQAGRYFERDYDLCVRCGRCVRVCHEVRGAKAIVFREKHGR-QE 174

Query: 92  RTVRYDIDMIK--CIYCGLCQEACPVDAIVE 120
               +D  + +  C +CG C + CPV A+ E
Sbjct: 175 VGTPFDRPLAETGCQFCGACVDVCPVGALRE 205


>gi|150397561|ref|YP_001328028.1| dihydropyrimidine dehydrogenase [Sinorhizobium medicae WSM419]
 gi|150029076|gb|ABR61193.1| dihydroorotate dehydrogenase family protein [Sinorhizobium medicae
           WSM419]
          Length = 437

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 6/76 (7%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI C  C   C     + ++  +  +G R    +++   +C+ 
Sbjct: 330 QYLNLNYITKAKIDQDACIKCGRCHIACED--TSHQAITQLVNGVR---HFEVIEEECVG 384

Query: 106 CGLCQEACPV-DAIVE 120
           C LC   CPV + I  
Sbjct: 385 CNLCVNVCPVDNCITM 400


>gi|323488015|ref|ZP_08093268.1| formate dehydrogenase subunit alpha [Planococcus donghaensis
           MPA1U2]
 gi|323398283|gb|EGA91076.1| formate dehydrogenase subunit alpha [Planococcus donghaensis
           MPA1U2]
          Length = 975

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 7/93 (7%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+E          +     Y     +CIAC  C  +C       E+        R 
Sbjct: 118 HQKYPYE--PKCTVDEVDLTNPFYRYDPNQCIACGQCVEVCQ-NLQVNETLTMDWSRDRP 174

Query: 93  TVRYD----IDMIKCIYCGLCQEACPVDAIVEG 121
            V +D    I+   C+ CG C  ACP +A++E 
Sbjct: 175 IVLWDGGAKINDSSCVSCGQCVTACPCNALMET 207



 Score = 40.1 bits (92), Expect = 0.10,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-------TVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 86  RILENHLLYCTVCDNNNGNCKVHNTVDMMEIEHQKYPYEPKCTVDEVDLTNPFYRYDPNQ 145

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 146 CIACGQCVEVC 156


>gi|301057791|ref|ZP_07198860.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300448102|gb|EFK11798.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 574

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 31/86 (36%), Gaps = 11/86 (12%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD-----------GTRRTVRY 96
           R       Y    ERCI C+ C  + P   I + +G   +D              +    
Sbjct: 481 RCYLCYLHYEIDMERCIYCRYCIDVAPRDCIKLVNGVETNDDGAIIGFVETSEWEKVNAV 540

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGP 122
            ID  +CI CG C   CP+D I    
Sbjct: 541 IIDNKRCIRCGECVRVCPMDCISVTK 566



 Score = 37.4 bits (85), Expect = 0.62,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 20/53 (37%)

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
                +  +S           + Y+IDM +CIYC  C +  P D I      E
Sbjct: 466 VETGYLKEQSREEAKRCYLCYLHYEIDMERCIYCRYCIDVAPRDCIKLVNGVE 518


>gi|229185806|ref|ZP_04312981.1| formate dehydrogenase [Bacillus cereus BGSC 6E1]
 gi|228597684|gb|EEK55329.1| formate dehydrogenase [Bacillus cereus BGSC 6E1]
          Length = 979

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+E          +     Y     +CIAC  C  +C    +             R
Sbjct: 123 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 180

Query: 93  TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120
            +  +   I+   C+ CG C   CP +A++E
Sbjct: 181 VIWDEGVSINDSSCVSCGQCVTICPCNALME 211



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 91  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|225865555|ref|YP_002750933.1| molybdopterin oxidoreductase family protein [Bacillus cereus
           03BB102]
 gi|225787962|gb|ACO28179.1| molybdopterin oxidoreductase family protein [Bacillus cereus
           03BB102]
          Length = 979

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+E          +     Y     +CIAC  C  +C    +             R
Sbjct: 123 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 180

Query: 93  TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120
            +  +   I+   C+ CG C   CP +A++E
Sbjct: 181 VIWDEGVSINDSSCVSCGQCVTICPCNALME 211



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 91  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|196038509|ref|ZP_03105818.1| molybdopterin oxidoreductase family protein [Bacillus cereus
           NVH0597-99]
 gi|196030917|gb|EDX69515.1| molybdopterin oxidoreductase family protein [Bacillus cereus
           NVH0597-99]
          Length = 979

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+E          +     Y     +CIAC  C  +C    +             R
Sbjct: 123 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 180

Query: 93  TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120
            +  +   I+   C+ CG C   CP +A++E
Sbjct: 181 VIWDEGVSINDSSCVSCGQCVTICPCNALME 211



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 91  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|158520057|ref|YP_001527927.1| AMP-dependent synthetase and ligase [Desulfococcus oleovorans Hxd3]
 gi|158508883|gb|ABW65850.1| AMP-dependent synthetase and ligase [Desulfococcus oleovorans Hxd3]
          Length = 708

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/86 (33%), Positives = 37/86 (43%), Gaps = 6/86 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGP-RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
            EE C  C +C  ICPA++I  + GP +  +G         D+  CI CG C  ACP  A
Sbjct: 30  NEETCRRCGICSFICPARSIKSDRGPMKWKEGMPWLATVAPDVTNCIACGCCLAACPEGA 89

Query: 118 IVEGPNFEFA-TETR----QELYYDK 138
           I     F       R     +L Y K
Sbjct: 90  ITIERWFNPGYFYQRLSQTSDLVYPK 115


>gi|160940737|ref|ZP_02088079.1| hypothetical protein CLOBOL_05631 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436257|gb|EDP14024.1| hypothetical protein CLOBOL_05631 [Clostridium bolteae ATCC
           BAA-613]
          Length = 505

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 25/68 (36%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110
                +C  C  C   CP  AI     P         + YD      ID  KCI CG C 
Sbjct: 147 YIEPGKCKECGKCSQACPYNAIAHLERPCKKICPVDAITYDEYGICVIDEKKCIQCGACI 206

Query: 111 EACPVDAI 118
            +CP  AI
Sbjct: 207 HSCPFGAI 214


>gi|91200126|emb|CAJ73169.1| similar to molybdopterin containing oxidoreductase (FdhA, nuoG,
           napA) [Candidatus Kuenenia stuttgartiensis]
          Length = 896

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 5/81 (6%)

Query: 57  PNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEAC 113
                +CI C  C  IC   Q   + +       TR +  ++  M    C++CG C   C
Sbjct: 140 YRDMNKCILCGKCVRICDEVQGQHVWAFSDRGIKTRVSTAFEKSMQDGGCVFCGHCVSVC 199

Query: 114 PVDAIVEGPNFEFA--TETRQ 132
           PV A+++ P  + A   ETR+
Sbjct: 200 PVGALMDKPVMKKARSWETRK 220


>gi|30263522|ref|NP_845899.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. Ames]
 gi|49186372|ref|YP_029624.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. Sterne]
 gi|50196953|ref|YP_052641.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|165871012|ref|ZP_02215663.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. A0488]
 gi|167640582|ref|ZP_02398844.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. A0193]
 gi|170688420|ref|ZP_02879628.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. A0465]
 gi|170708174|ref|ZP_02898621.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. A0389]
 gi|177652510|ref|ZP_02934977.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. A0174]
 gi|190564630|ref|ZP_03017551.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|227813598|ref|YP_002813607.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. CDC 684]
 gi|229603890|ref|YP_002867767.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. A0248]
 gi|254686139|ref|ZP_05149998.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. CNEVA-9066]
 gi|254723536|ref|ZP_05185324.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. A1055]
 gi|254738611|ref|ZP_05196314.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. Western North America USA6153]
 gi|254752929|ref|ZP_05204965.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. Vollum]
 gi|254759201|ref|ZP_05211227.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. Australia 94]
 gi|30258157|gb|AAP27385.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. Ames]
 gi|49180299|gb|AAT55675.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. Sterne]
 gi|50083015|gb|AAT70149.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|164713223|gb|EDR18749.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. A0488]
 gi|167511450|gb|EDR86834.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. A0193]
 gi|170126982|gb|EDS95862.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. A0389]
 gi|170667590|gb|EDT18345.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. A0465]
 gi|172082184|gb|EDT67251.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. A0174]
 gi|190563947|gb|EDV17911.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|227007095|gb|ACP16838.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. CDC 684]
 gi|229268298|gb|ACQ49935.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. A0248]
          Length = 979

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+E          +     Y     +CIAC  C  +C    +             R
Sbjct: 123 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 180

Query: 93  TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120
            +  +   I+   C+ CG C   CP +A++E
Sbjct: 181 VIWDEGVSINDSSCVSCGQCVTICPCNALME 211



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 91  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|229092537|ref|ZP_04223693.1| formate dehydrogenase [Bacillus cereus Rock3-42]
 gi|228690824|gb|EEL44599.1| formate dehydrogenase [Bacillus cereus Rock3-42]
          Length = 975

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+E          +     Y     +CIAC  C  +C    +             R
Sbjct: 119 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 176

Query: 93  TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120
            +  +   I+   C+ CG C   CP +A++E
Sbjct: 177 VIWDEGVSINDSSCVSCGQCVTICPCNALME 207



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 87  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 146

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 147 CIACGQCVEVC 157


>gi|260588646|ref|ZP_05854559.1| Fe-hydrogenase large subunit family protein [Blautia hansenii DSM
           20583]
 gi|331082003|ref|ZP_08331131.1| hypothetical protein HMPREF0992_00055 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260541121|gb|EEX21690.1| Fe-hydrogenase large subunit family protein [Blautia hansenii DSM
           20583]
 gi|330405598|gb|EGG85128.1| hypothetical protein HMPREF0992_00055 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 501

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 7/76 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQEA 112
            +E+CI C  C+++CP  AI  +  P                R  I+  KC+ CG+C  +
Sbjct: 148 DQEKCIKCGKCKSVCPYDAIAKKERPCARACGVNAIESDEMGRATINNEKCVSCGMCMVS 207

Query: 113 CPVDAI-VEGPNFEFA 127
           CP  AI  +   F+ A
Sbjct: 208 CPFGAISDKSQIFQLA 223



 Score = 42.0 bits (97), Expect = 0.029,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 13/67 (19%)

Query: 54  RRYPNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +       C  C    C+ ICP  AI+I  G              ID  KCI CG C+ 
Sbjct: 112 TKMYEVSNMCRGCVAHPCKEICPKGAISIIKGKSV-----------IDQEKCIKCGKCKS 160

Query: 112 ACPVDAI 118
            CP DAI
Sbjct: 161 VCPYDAI 167


>gi|239628401|ref|ZP_04671432.1| hydrogenase [Clostridiales bacterium 1_7_47_FAA]
 gi|239518547|gb|EEQ58413.1| hydrogenase [Clostridiales bacterium 1_7_47FAA]
          Length = 461

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 31/105 (29%), Gaps = 19/105 (18%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P  +                   E RCI C  C  +C      + +      G R    
Sbjct: 6   SPEVRVPIDKENVSIFR------EESRCIKCGQCRDMCRDYIGVLGTYDLLRTGDR---- 55

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140
                  CI CG C   CPV++I E P +            D E+
Sbjct: 56  -----AVCINCGQCANVCPVESIREQPEYGMVAAD----IMDPEK 91


>gi|196044536|ref|ZP_03111771.1| molybdopterin oxidoreductase family protein [Bacillus cereus
           03BB108]
 gi|196024571|gb|EDX63243.1| molybdopterin oxidoreductase family protein [Bacillus cereus
           03BB108]
          Length = 979

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+E          +     Y     +CIAC  C  +C    +             R
Sbjct: 123 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 180

Query: 93  TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120
            +  +   I+   C+ CG C   CP +A++E
Sbjct: 181 VIWDEGVSINDSSCVSCGQCVTICPCNALME 211



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 91  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|167038236|ref|YP_001665814.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing
           protein [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|320116646|ref|YP_004186805.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|166857070|gb|ABY95478.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|319929737|gb|ADV80422.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 1175

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 53/143 (37%), Gaps = 31/143 (21%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTRRTV 94
            G+ +   RG           + CI C  C  +CP  AI     T E      +G +   
Sbjct: 667 PGTAAYEKRGIAVDVPEWQ-IDNCIQCNQCAFVCPHAAIRPFLLTEEEVKNAPEGFKVKK 725

Query: 95  -----------RYDIDMIKCIYCGLCQEACP--VDAIVEGP---------NFEFATE-TR 131
                      R  + ++ C  CG+C   CP    A+V  P         N+E+A   + 
Sbjct: 726 AIGKGFEGLYYRIQVSVLDCTGCGVCANECPAKEKALVMKPLETQMEEAKNWEYAMTLSP 785

Query: 132 QELYYDKERLLNNGDRWESEIVR 154
           +E   +KE     G ++E+ ++ 
Sbjct: 786 KENPMNKE--TVKGSQFETPLLE 806


>gi|293416256|ref|ZP_06658896.1| sulfite reductase [Escherichia coli B185]
 gi|291432445|gb|EFF05427.1| sulfite reductase [Escherichia coli B185]
          Length = 337

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 27/94 (28%), Gaps = 8/94 (8%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
                  P +    S    G   + R     ERCI C  C   C   A+   S       
Sbjct: 148 KTVIAGCPNDCAKASMSDFGIIGVARMRFTAERCIGCGACVKACAHHAVGCLSLKNGKA- 206

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                    +   CI CG C  ACP  A    P 
Sbjct: 207 -------TKEESLCIGCGECVLACPTLAWQRQPQ 233


>gi|253741756|gb|EES98619.1| Pyruvate-flavodoxin oxidoreductase [Giardia intestinalis ATCC
           50581]
          Length = 1253

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 34/105 (32%), Gaps = 32/105 (30%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK------------------ 102
           E CI C  C   CP  A+        +        +++  +K                  
Sbjct: 722 ENCIQCGFCSVQCPHAAVRCFVMNEDNKPDNVPEDFEMLDMKGKLAAVNSDSSKIKFRVQ 781

Query: 103 -----CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLL 142
                C  CG+C EACP DA+   P          +   DK++ L
Sbjct: 782 VSPLDCRGCGVCVEACPKDALAMTPI---------DTVLDKQQKL 817


>gi|228906337|ref|ZP_04070221.1| formate dehydrogenase [Bacillus thuringiensis IBL 200]
 gi|228853249|gb|EEM98022.1| formate dehydrogenase [Bacillus thuringiensis IBL 200]
          Length = 978

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +             R +
Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
             +   I+   C+ CG C   CP +A++E
Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|228937827|ref|ZP_04100457.1| formate dehydrogenase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228970708|ref|ZP_04131350.1| formate dehydrogenase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228977285|ref|ZP_04137681.1| formate dehydrogenase [Bacillus thuringiensis Bt407]
 gi|228782424|gb|EEM30606.1| formate dehydrogenase [Bacillus thuringiensis Bt407]
 gi|228789010|gb|EEM36947.1| formate dehydrogenase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228821862|gb|EEM67860.1| formate dehydrogenase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|326938308|gb|AEA14204.1| formate dehydrogenase alpha chain [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 978

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +             R +
Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
             +   I+   C+ CG C   CP +A++E
Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|229177118|ref|ZP_04304507.1| formate dehydrogenase [Bacillus cereus 172560W]
 gi|228606299|gb|EEK63731.1| formate dehydrogenase [Bacillus cereus 172560W]
          Length = 978

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +             R +
Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
             +   I+   C+ CG C   CP +A++E
Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|218895646|ref|YP_002444057.1| molybdopterin oxidoreductase family protein [Bacillus cereus G9842]
 gi|228899276|ref|ZP_04063539.1| formate dehydrogenase [Bacillus thuringiensis IBL 4222]
 gi|218543549|gb|ACK95943.1| molybdopterin oxidoreductase family protein [Bacillus cereus G9842]
 gi|228860307|gb|EEN04704.1| formate dehydrogenase [Bacillus thuringiensis IBL 4222]
          Length = 978

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +             R +
Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
             +   I+   C+ CG C   CP +A++E
Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|218235223|ref|YP_002365387.1| molybdopterin oxidoreductase family protein [Bacillus cereus B4264]
 gi|218163180|gb|ACK63172.1| molybdopterin oxidoreductase family protein [Bacillus cereus B4264]
          Length = 978

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +             R +
Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
             +   I+   C+ CG C   CP +A++E
Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|310778774|ref|YP_003967107.1| nitroreductase [Ilyobacter polytropus DSM 2926]
 gi|309748097|gb|ADO82759.1| nitroreductase [Ilyobacter polytropus DSM 2926]
          Length = 273

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 16/108 (14%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                EE+CI C LC   C  + I +                 I+ + C  CG C   CP
Sbjct: 1   MMIVNEEKCIGCGLCVKDCFPKDIELIDKKA-----------KINNVTCFKCGHCIAVCP 49

Query: 115 VDAIVEGPNFEFA---TETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
            DA+     F+ +      +++   D   LL N  ++   I +    +
Sbjct: 50  TDAVT-TDEFDMSEVIEYDKEKFQVDPNNLL-NFIKFRRSIRQFKDKE 95


>gi|294083652|ref|YP_003550409.1| formate dehydrogenase subunit alpha [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292663224|gb|ADE38325.1| formate dehydrogenase alpha subunit [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 924

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 31/98 (31%), Gaps = 3/98 (3%)

Query: 25  RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC---PAQAITIE 81
              +K   T +    +         + +        + CI C LC   C       +   
Sbjct: 113 SELWKYAETQDVESGRFPARMSAEPDSSHPAIAVNMDACIQCGLCVRACREVQVNDVIGL 172

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           +G             D+    C+ CG C +ACP  A++
Sbjct: 173 AGRGADAHIVFDFGDDMGASTCVGCGECVQACPTGALM 210


>gi|229523599|ref|ZP_04413004.1| iron-sulfur cluster-binding protein [Vibrio cholerae bv. albensis
           VL426]
 gi|229337180|gb|EEO02197.1| iron-sulfur cluster-binding protein [Vibrio cholerae bv. albensis
           VL426]
          Length = 570

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 9/75 (12%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             C  C  C A+CP +A+                        C+ CGLC +ACP  A+  
Sbjct: 435 SDCTLCMSCVAVCPTRALHPAGDSPA---------LRFIEQDCVQCGLCVKACPEQALSA 485

Query: 121 GPNFEFATETRQELY 135
            P   ++   RQ + 
Sbjct: 486 TPQLNWSKAARQGVV 500



 Score = 40.9 bits (94), Expect = 0.067,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           C+ C   CPA A++ E   +         R  I+   C   G C  ACP +AI 
Sbjct: 203 CERCVDACPAGALSSEGSDQTGH------RIQINPYLCQGVGTCATACPTEAIH 250



 Score = 33.9 bits (76), Expect = 7.3,   Method: Composition-based stats.
 Identities = 6/23 (26%), Positives = 8/23 (34%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIV 119
           +     C  C  C   CP  A+ 
Sbjct: 431 ECQASDCTLCMSCVAVCPTRALH 453


>gi|167771401|ref|ZP_02443454.1| hypothetical protein ANACOL_02767 [Anaerotruncus colihominis DSM
           17241]
 gi|167666041|gb|EDS10171.1| hypothetical protein ANACOL_02767 [Anaerotruncus colihominis DSM
           17241]
          Length = 403

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 11/63 (17%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              +  C+ C +C+  C   AI I +               ID  KC+ CG C  ACPVD
Sbjct: 226 YVEQSVCVGCGMCKRNCAHDAIAITNRKAS-----------IDHSKCVGCGRCIGACPVD 274

Query: 117 AIV 119
           A+ 
Sbjct: 275 AVQ 277


>gi|197120281|ref|YP_002140708.1| NADH dehydrogenase I subunit G [Geobacter bemidjiensis Bem]
 gi|197089641|gb|ACH40912.1| NADH dehydrogenase I, G subunit, putative [Geobacter bemidjiensis
           Bem]
          Length = 821

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 20/64 (31%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              RCI C  C  IC                  +        + C +CG C   CPV A+
Sbjct: 143 DMNRCIHCGKCARICDEIVSYGAYTFINRGIEAKMGTEFDGPLNCEFCGSCVSVCPVGAL 202

Query: 119 VEGP 122
              P
Sbjct: 203 NSRP 206


>gi|83590433|ref|YP_430442.1| 2-oxoacid:acceptor oxidoreductase, delta subunit,
           pyruvate/2-ketoisovalerate [Moorella thermoacetica ATCC
           39073]
 gi|83573347|gb|ABC19899.1| 2-oxoacid:acceptor oxidoreductase, delta subunit,
           pyruvate/2-ketoisovalerate [Moorella thermoacetica ATCC
           39073]
          Length = 315

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 26/78 (33%), Gaps = 11/78 (14%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G   ++R     E C  C  C   CP   IT                   +M  C  CGL
Sbjct: 247 GNWRIQRPIIDREACTECYTCWIYCPDSCITRTEEGPV-----------FNMKYCKGCGL 295

Query: 109 CQEACPVDAIVEGPNFEF 126
           C   CP  A+   P  +F
Sbjct: 296 CTAVCPSGALTNVPELDF 313


>gi|296241969|ref|YP_003649456.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Thermosphaera aggregans DSM 11486]
 gi|296094553|gb|ADG90504.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermosphaera aggregans DSM 11486]
          Length = 636

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 24/67 (35%), Gaps = 9/67 (13%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            L  Y    E+C  C  C  +    A+ +E   R            I    C  CGLC  
Sbjct: 565 VLPVYKVDPEKCTGCLACVNLSACPALVLEPDSRKPV---------IIEELCAGCGLCAS 615

Query: 112 ACPVDAI 118
            CP +AI
Sbjct: 616 ICPFNAI 622


>gi|291537642|emb|CBL10754.1| 2-oxoacid:acceptor oxidoreductase, gamma subunit,
           pyruvate/2-ketoisovalerate family [Roseburia
           intestinalis M50/1]
          Length = 373

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 5/96 (5%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           ++RCI C LC++ CP   +  +  P  + G    V   +D   C  C  C + CP  A+V
Sbjct: 265 QDRCINCGLCDSTCPD--MVFQFAPGTYKGKEAMVNQGLDYRHCKGCLRCVDVCPTHALV 322

Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRN 155
           +    ++  +         + LL +  R++     +
Sbjct: 323 KAEEKDYPDKPHS---MPDQDLLPDSVRYQKTGANS 355


>gi|219667887|ref|YP_002458322.1| nitroreductase [Desulfitobacterium hafniense DCB-2]
 gi|219538147|gb|ACL19886.1| nitroreductase [Desulfitobacterium hafniense DCB-2]
          Length = 278

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 38/109 (34%), Gaps = 16/109 (14%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                  E+CI C LC   C    I I  G              I   +C+ CG C   C
Sbjct: 5   IMVNIDSEKCIGCGLCVRDCFPGKIVIVEGKA-----------QIKNKQCMQCGHCIAIC 53

Query: 114 PVDAIVEGPNFEFAT---ETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
           P DA+     +  A      R+E   D + LL N  ++     + I  +
Sbjct: 54  PQDAVSMI-EYNMAEVKAYDRREFSVDADILL-NFIKYRRSCRQFIDKE 100


>gi|166366555|ref|YP_001658828.1| pyruvate-flavodoxin oxidoreductase [Microcystis aeruginosa
           NIES-843]
 gi|166088928|dbj|BAG03636.1| pyruvate-flavodoxin oxidoreductase [Microcystis aeruginosa
           NIES-843]
          Length = 1184

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 40/134 (29%), Gaps = 30/134 (22%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ--------------AITIESGPR 85
             +TS   +   A        + C+ C  C  +CP                A        
Sbjct: 669 PTATSQWEKRNIAQEIPVWDADVCVQCGKCVLVCPHAVIRSKVYDEAELATAPETFKVAN 728

Query: 86  CHDGTRRTVRYDID--MIKCIYCGLCQEACPV--------DAIVEGPNFEFATETR--QE 133
             D   + +++ I      C  CGLC + CP          AI   P      + R   +
Sbjct: 729 AKDHDWKGLKFTIQVAAEDCTGCGLCVDVCPAKNKSQPRLRAINMAPQLPLREQERVNWD 788

Query: 134 LYYDKERLLNNGDR 147
            + +    L N DR
Sbjct: 789 FFLN----LPNPDR 798


>gi|159026286|emb|CAO88863.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 1184

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 40/134 (29%), Gaps = 30/134 (22%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ--------------AITIESGPR 85
             +TS   +   A        + C+ C  C  +CP                A        
Sbjct: 669 PTATSQWEKRNIAQEIPVWDADVCVQCGKCVLVCPHAVIRSKVYDEVELATAPETFKVAN 728

Query: 86  CHDGTRRTVRYDID--MIKCIYCGLCQEACPV--------DAIVEGPNFEFATETR--QE 133
             D   + +++ I      C  CGLC + CP          AI   P      + R   +
Sbjct: 729 AKDHDWKGLKFTIQVAAEDCTGCGLCVDVCPAKNKSQPRLRAINMAPQLPLREQERVNWD 788

Query: 134 LYYDKERLLNNGDR 147
            + +    L N DR
Sbjct: 789 FFLN----LPNPDR 798


>gi|293607054|ref|ZP_06689397.1| benzoyl-CoA oxygenase [Achromobacter piechaudii ATCC 43553]
 gi|292814544|gb|EFF73682.1| benzoyl-CoA oxygenase [Achromobacter piechaudii ATCC 43553]
          Length = 416

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 11/67 (16%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            LR++    E CI C  CE  CP  AIT +S             Y +D   C  C  C  
Sbjct: 9   VLRQHLIDPEICIRCNTCEETCPVDAITHDSN-----------NYVVDPDICNGCMACVP 57

Query: 112 ACPVDAI 118
            CP  +I
Sbjct: 58  PCPTGSI 64



 Score = 37.8 bits (86), Expect = 0.57,   Method: Composition-based stats.
 Identities = 14/26 (53%), Positives = 15/26 (57%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPN 123
           ID   CI C  C+E CPVDAI    N
Sbjct: 15  IDPEICIRCNTCEETCPVDAITHDSN 40


>gi|291436114|ref|ZP_06575504.1| NADH dehydrogenase I chain G [Streptomyces ghanaensis ATCC 14672]
 gi|291339009|gb|EFE65965.1| NADH dehydrogenase I chain G [Streptomyces ghanaensis ATCC 14672]
          Length = 301

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 4/75 (5%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM----IKCIYCGLCQE 111
           Y    ++CI C  C   C  Q     +      G    +  + D       C+YCG C E
Sbjct: 160 YVRDYDKCILCYKCVDACGEQWQNTFAISVAGRGFDARIAVEHDAALTDSACVYCGNCIE 219

Query: 112 ACPVDAIVEGPNFEF 126
            CP  A+     F+ 
Sbjct: 220 VCPTGALSFKSEFDM 234


>gi|269792006|ref|YP_003316910.1| Cobyrinic acid ac-diamide synthase [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269099641|gb|ACZ18628.1| Cobyrinic acid ac-diamide synthase [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 296

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 22/63 (34%), Gaps = 11/63 (17%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
              C  C  C A C   AI +E G              +D  +C  CG C   CP  AI 
Sbjct: 68  RHLCEGCGRCAAACRFDAIWLEDGEV-----------RLDRRRCEGCGACAVVCPTGAIS 116

Query: 120 EGP 122
             P
Sbjct: 117 LSP 119


>gi|229148929|ref|ZP_04277174.1| formate dehydrogenase [Bacillus cereus m1550]
 gi|228634469|gb|EEK91053.1| formate dehydrogenase [Bacillus cereus m1550]
          Length = 978

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +             R +
Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
             +   I+   C+ CG C   CP +A++E
Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|256830113|ref|YP_003158841.1| response regulator receiver protein [Desulfomicrobium baculatum DSM
           4028]
 gi|256579289|gb|ACU90425.1| response regulator receiver protein [Desulfomicrobium baculatum DSM
           4028]
          Length = 1143

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 30/87 (34%), Gaps = 7/87 (8%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI-------TIESGPRCHDGTRRTVRY 96
             +F    + R       +C++C  C  +CP +         T  S             Y
Sbjct: 98  PGKFFVSLSRRSPLVDPHKCVSCGKCSEVCPVKVPSEFNAGLTQRSAVYLPVPHAIPNHY 157

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPN 123
            +D+  CI C  C EACP  AI     
Sbjct: 158 VLDLDNCIRCWKCHEACPTGAIDLKFE 184



 Score = 38.9 bits (89), Expect = 0.25,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 9/55 (16%)

Query: 63   CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
            C  C+ C A CP  A T++                +D + C  CG C   CP  A
Sbjct: 1075 CSLCQACVAACPYGARTVDLE---------NELILVDEMLCQGCGACAAVCPNSA 1120


>gi|257413665|ref|ZP_04743762.2| pyruvate ferredoxin oxidoreductase gamma-delta subunit [Roseburia
           intestinalis L1-82]
 gi|257202840|gb|EEV01125.1| pyruvate ferredoxin oxidoreductase gamma-delta subunit [Roseburia
           intestinalis L1-82]
          Length = 373

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 5/96 (5%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           ++RCI C LC++ CP   +  +  P  + G    V   +D   C  C  C + CP  A+V
Sbjct: 265 QDRCINCGLCDSTCPD--MVFQFAPGTYKGKEAMVNQGLDYRHCKGCLRCVDVCPTHALV 322

Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRN 155
           +    ++  +         + LL +  R++     +
Sbjct: 323 KAEEKDYPDKPHS---MPDQDLLPDSVRYQKTGANS 355


>gi|323692877|ref|ZP_08107102.1| hypothetical protein HMPREF9475_01965 [Clostridium symbiosum
           WAL-14673]
 gi|323503052|gb|EGB18889.1| hypothetical protein HMPREF9475_01965 [Clostridium symbiosum
           WAL-14673]
          Length = 263

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 28/88 (31%), Gaps = 16/88 (18%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                +  CI C  C   C +  + I+ G                   C+ CG C   CP
Sbjct: 1   MVKIEQSLCIGCAKCVKDCVSGVLHIDQGKAAVR------------ESCMQCGHCVAVCP 48

Query: 115 VDAIVEGPNFEFAT---ETRQELYYDKE 139
           V A+   P ++ A      +    Y  E
Sbjct: 49  VKAVSI-PEYDMADVAEYDKDSFTYTPE 75


>gi|313898382|ref|ZP_07831919.1| 4Fe-4S binding domain protein [Clostridium sp. HGF2]
 gi|312956764|gb|EFR38395.1| 4Fe-4S binding domain protein [Clostridium sp. HGF2]
          Length = 504

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV------RYDIDMIKCIYCGLCQ 110
              +E+CI C  C  +CP  AI     P         +      R +ID  KC+ CG+C 
Sbjct: 145 YIDQEKCIKCGRCMDVCPYGAINKLERPCARSCGMDAITSDELGRAEIDYDKCVSCGMCL 204

Query: 111 EACPVDAI 118
             CP  AI
Sbjct: 205 VNCPFGAI 212



 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 13/61 (21%)

Query: 61  ERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C  C    C+ +CP  AI++ +G              ID  KCI CG C + CP  AI
Sbjct: 118 DTCQGCLAHPCKEVCPKDAISMVNGKSY-----------IDQEKCIKCGRCMDVCPYGAI 166

Query: 119 V 119
            
Sbjct: 167 N 167


>gi|300785297|ref|YP_003765588.1| ferredoxin--NADP+ reductase [Amycolatopsis mediterranei U32]
 gi|299794811|gb|ADJ45186.1| ferredoxin--NADP+ reductase [Amycolatopsis mediterranei U32]
          Length = 489

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           + C     C ++CP   I              T    ID + CI CG C +ACPVDAI 
Sbjct: 7   QTCCTDATCVSVCPVNCIHPTPDEPD---FGTTDLLYIDPVTCIDCGACADACPVDAIF 62


>gi|298528321|ref|ZP_07015725.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511973|gb|EFI35875.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 615

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 15/96 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            L+YF K      Y     +     R   AL ++    ++C +C LC   CP+ A+  + 
Sbjct: 534 TLKYFPKE-----YEDHIRNKKCPARKCIALVKFRVNPDKCTSCGLCHKNCPSGAVRWKK 588

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                          ID  KCI C LC + C  DAI
Sbjct: 589 KQPAE----------IDPQKCIKCMLCLDKCMFDAI 614



 Score = 37.0 bits (84), Expect = 0.88,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 19/53 (35%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           +         I +           V++ ++  KC  CGLC + CP  A+    
Sbjct: 536 KYFPKEYEDHIRNKKCPARKCIALVKFRVNPDKCTSCGLCHKNCPSGAVRWKK 588


>gi|219852666|ref|YP_002467098.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanosphaerula palustris E1-9c]
 gi|219546925|gb|ACL17375.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanosphaerula palustris E1-9c]
          Length = 368

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 11/68 (16%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C+ C  +CP QAI ++ G              I   +CI C  C   CP  AI    
Sbjct: 195 CIGCQTCLPVCPQQAIGMDEGAAL-----------ISKDRCIGCFECMTVCPERAIDVDW 243

Query: 123 NFEFATET 130
             +  T T
Sbjct: 244 ETDIPTFT 251



 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 18/70 (25%), Gaps = 3/70 (4%)

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVR---YDIDMIKCIYCGLCQEACPVDAIVEG 121
             K  E      AI            +R        +    CI C  C   CP  AI   
Sbjct: 154 HFKGHEVAGFGGAIKNLGMGCASPAGKREQHSARPMVVRDLCIGCQTCLPVCPQQAIGMD 213

Query: 122 PNFEFATETR 131
                 ++ R
Sbjct: 214 EGAALISKDR 223


>gi|170691834|ref|ZP_02882998.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           graminis C4D1M]
 gi|170143118|gb|EDT11282.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           graminis C4D1M]
          Length = 344

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 22/64 (34%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C LC   CP  AI                 + +    C  C LC   CPVD I
Sbjct: 124 DEHICIGCTLCMQACPVDAIVGAPK----------HMHTVVAELCTGCDLCVPPCPVDCI 173

Query: 119 VEGP 122
              P
Sbjct: 174 SMQP 177



 Score = 37.4 bits (85), Expect = 0.63,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 17/31 (54%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
           ID   CI C LC +ACPVDAIV  P      
Sbjct: 123 IDEHICIGCTLCMQACPVDAIVGAPKHMHTV 153


>gi|167630826|ref|YP_001681325.1| formate dehydrogenase, alpha subunit [Heliobacterium modesticaldum
           Ice1]
 gi|167593566|gb|ABZ85314.1| formate dehydrogenase, alpha subunit [Heliobacterium modesticaldum
           Ice1]
          Length = 937

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 5/86 (5%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
           YP       P   G   ++R     ++C  C  CE +CP+ A+T         G      
Sbjct: 142 YPAVDVPLLPLKGGNPFIQRDE---QKCTGCGSCERLCPSTALTSLQARGSVFGETAETA 198

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEG 121
            +     C +CG+C   CP  A++E 
Sbjct: 199 SE--NAACDHCGICLNVCPTAALLET 222


>gi|53725521|ref|YP_103524.1| ferredoxin [Burkholderia mallei ATCC 23344]
 gi|76812165|ref|YP_332747.1| ferredoxin [Burkholderia pseudomallei 1710b]
 gi|52428944|gb|AAU49537.1| iron-sulfur cluster-binding protein [Burkholderia mallei ATCC
           23344]
 gi|76581618|gb|ABA51093.1| electron transport complex, RnfABCDGE type, B subunit subfamily,
           putative [Burkholderia pseudomallei 1710b]
          Length = 316

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 26/81 (32%), Gaps = 10/81 (12%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
             +     E A       E+ CI C LC   CP  AI                 + I   
Sbjct: 92  PLNQAHGVERARPVAFIDEQLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVAE 141

Query: 102 KCIYCGLCQEACPVDAIVEGP 122
            C  C LC   CPVD I   P
Sbjct: 142 LCTGCDLCVPPCPVDCIAMIP 162


>gi|323483873|ref|ZP_08089250.1| nitroreductase [Clostridium symbiosum WAL-14163]
 gi|323402827|gb|EGA95148.1| nitroreductase [Clostridium symbiosum WAL-14163]
          Length = 263

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 28/88 (31%), Gaps = 16/88 (18%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                +  CI C  C   C +  + I+ G                   C+ CG C   CP
Sbjct: 1   MVKIEQSLCIGCAKCVKDCVSGVLHIDQGKAAVR------------ESCMQCGHCVAVCP 48

Query: 115 VDAIVEGPNFEFAT---ETRQELYYDKE 139
           V A+   P ++ A      +    Y  E
Sbjct: 49  VKAVSI-PEYDMADVAEYDKDSFTYTPE 75


>gi|295677023|ref|YP_003605547.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia sp.
           CCGE1002]
 gi|295436866|gb|ADG16036.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia sp.
           CCGE1002]
          Length = 412

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 11/68 (16%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             LR++    E CI C  CE  CP  AIT +              Y +    C  C  C 
Sbjct: 8   EILRQHLIDPEICIRCNTCEETCPIDAITHDDN-----------NYVVKADVCNGCMACV 56

Query: 111 EACPVDAI 118
             CP  AI
Sbjct: 57  PPCPTGAI 64



 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPN 123
           ID   CI C  C+E CP+DAI    N
Sbjct: 15  IDPEICIRCNTCEETCPIDAITHDDN 40


>gi|253999507|ref|YP_003051570.1| RnfABCDGE type electron transport complex subunit B [Methylovorus
           sp. SIP3-4]
 gi|253986186|gb|ACT51043.1| electron transport complex, RnfABCDGE type, B subunit [Methylovorus
           sp. SIP3-4]
          Length = 299

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 30/81 (37%), Gaps = 10/81 (12%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
             +P+   +   +     E+ CI C LC   CP  AI   S             + +   
Sbjct: 99  PLNPQHGVQKPKQVAFIDEQTCIGCTLCIQACPVDAILGASKQ----------MHTVIAD 148

Query: 102 KCIYCGLCQEACPVDAIVEGP 122
           +C  C LC   CPVD I   P
Sbjct: 149 ECTGCELCIAPCPVDCITMQP 169


>gi|228919447|ref|ZP_04082811.1| formate dehydrogenase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228840090|gb|EEM85367.1| formate dehydrogenase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 978

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +             R +
Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
             +   I+   C+ CG C   CP +A++E
Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|228963683|ref|ZP_04124826.1| formate dehydrogenase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228795987|gb|EEM43452.1| formate dehydrogenase [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 974

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +             R +
Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
             +   I+   C+ CG C   CP +A++E
Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|229159670|ref|ZP_04287681.1| formate dehydrogenase [Bacillus cereus R309803]
 gi|228623821|gb|EEK80636.1| formate dehydrogenase [Bacillus cereus R309803]
          Length = 988

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +             R +
Sbjct: 133 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 190

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
             +   I+   C+ CG C   CP +A++E
Sbjct: 191 WDNGVSINDSSCVSCGQCVTVCPCNALME 219



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 99  RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 158

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 159 CIACGQCVEVC 169


>gi|223985321|ref|ZP_03635396.1| hypothetical protein HOLDEFILI_02702 [Holdemania filiformis DSM
           12042]
 gi|223962708|gb|EEF67145.1| hypothetical protein HOLDEFILI_02702 [Holdemania filiformis DSM
           12042]
          Length = 202

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/74 (35%), Positives = 30/74 (40%), Gaps = 6/74 (8%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCI 104
             L R      +C  C  C   CP  AI +   P         +R+D      ID  KCI
Sbjct: 128 MGLHRAQIDYTKCKECGACARSCPYNAIVVTERPCSQHCPVDAIRWDENGIAQIDETKCI 187

Query: 105 YCGLCQEACPVDAI 118
            CG CQ ACP  AI
Sbjct: 188 NCGACQAACPFGAI 201



 Score = 33.9 bits (76), Expect = 7.5,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGT-----RRTVRYDIDMIKCIYCGLCQEACPVDA 117
           C  C + +           +                 R  ID  KC  CG C  +CP +A
Sbjct: 95  CDGCTIRKIQITDNCRKCMAKACLASCKFDAISMGLHRAQIDYTKCKECGACARSCPYNA 154

Query: 118 IVEG 121
           IV  
Sbjct: 155 IVVT 158


>gi|303249089|ref|ZP_07335331.1| hydrogenase, Fe-only [Desulfovibrio fructosovorans JJ]
 gi|1914864|emb|CAA72423.1| cytochrome-c3 hydrogenase [Desulfovibrio fructosovorans JJ]
 gi|302489504|gb|EFL49448.1| hydrogenase, Fe-only [Desulfovibrio fructosovorans JJ]
          Length = 421

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/84 (33%), Positives = 33/84 (39%), Gaps = 10/84 (11%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
           +E+    P    + A       E +CI C  C   CP  AIT ESG              
Sbjct: 11  YEQTVPPPGTNLDQAYIV-QVDETKCIGCDTCMGYCPTGAITGESGEPHKV--------- 60

Query: 98  IDMIKCIYCGLCQEACPVDAIVEG 121
           +D   CI CG C   CPV AI E 
Sbjct: 61  VDPAACINCGQCLTHCPVAAIYET 84



 Score = 37.0 bits (84), Expect = 0.91,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 17/45 (37%)

Query: 74  PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            A+    ++ P       +     +D  KCI C  C   CP  AI
Sbjct: 6   MAKIFYEQTVPPPGTNLDQAYIVQVDETKCIGCDTCMGYCPTGAI 50


>gi|73661910|ref|YP_300691.1| formate dehydrogenase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123775385|sp|Q49ZN0|FDHL_STAS1 RecName: Full=Putative formate dehydrogenase SSP0601
 gi|72494425|dbj|BAE17746.1| putative formate dehydrogenase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 984

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 13/96 (13%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P+EK               Y     +CI C  C  +C    +             R +  
Sbjct: 131 PYEKDYGP----------FYRYDPNQCILCGRCVEVCQDVQVNETLTIDWERQQPRVIWD 180

Query: 97  D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           +   I+   C+ CG C   CP +A++E      A  
Sbjct: 181 NDTSINDSSCVGCGQCATVCPCNAMLEVNMEGNAGY 216



 Score = 42.8 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 17/68 (25%), Gaps = 8/68 (11%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIE----SGPRCHDGTRRTVRYDIDMIKCIY 105
           R        C  C      CE         +E                  Y  D  +CI 
Sbjct: 90  RILEKHMLYCTVCDYNNGDCEIHNTMDQWGLEHQTYEYKEKPYEKDYGPFYRYDPNQCIL 149

Query: 106 CGLCQEAC 113
           CG C E C
Sbjct: 150 CGRCVEVC 157


>gi|330995605|ref|ZP_08319505.1| electron transfer flavoprotein FAD-binding domain protein
           [Paraprevotella xylaniphila YIT 11841]
 gi|329575011|gb|EGG56564.1| electron transfer flavoprotein FAD-binding domain protein
           [Paraprevotella xylaniphila YIT 11841]
          Length = 404

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 12/64 (18%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           +CI+C +C   C   AI +   P                  C  CG C +ACPV A V  
Sbjct: 17  QCISCGICAESCAYGAIRMGDFPEVD------------EENCRLCGGCVQACPVGAWVMQ 64

Query: 122 PNFE 125
              E
Sbjct: 65  RQDE 68



 Score = 37.4 bits (85), Expect = 0.73,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 17/45 (37%)

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
                 +     +   +CI CG+C E+C   AI  G   E   E 
Sbjct: 1   MKMNKDKDFILQLQAGQCISCGICAESCAYGAIRMGDFPEVDEEN 45


>gi|322418857|ref|YP_004198080.1| electron transfer flavoprotein alpha/beta-subunit [Geobacter sp.
           M18]
 gi|320125244|gb|ADW12804.1| Electron transfer flavoprotein alpha/beta-subunit [Geobacter sp.
           M18]
          Length = 441

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 16/81 (19%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACK-LCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100
               + RG+  L      E +CIAC   C++ CP  AI +                 ID 
Sbjct: 6   KPPKKPRGKATLL-----ENKCIACGARCQSACPVDAIQMNDAGEP----------IIDA 50

Query: 101 IKCIYCGLCQEACPVDAIVEG 121
            +CI C  C + CPV A+   
Sbjct: 51  SRCIGCVKCVKVCPVQALEMS 71


>gi|229188797|ref|ZP_04315832.1| formate dehydrogenase [Bacillus cereus ATCC 10876]
 gi|228594698|gb|EEK52482.1| formate dehydrogenase [Bacillus cereus ATCC 10876]
          Length = 978

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +             R +
Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
             +   I+   C+ CG C   CP +A++E
Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|206967976|ref|ZP_03228932.1| molybdopterin oxidoreductase family protein [Bacillus cereus
           AH1134]
 gi|206736896|gb|EDZ54043.1| molybdopterin oxidoreductase family protein [Bacillus cereus
           AH1134]
          Length = 978

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +             R +
Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
             +   I+   C+ CG C   CP +A++E
Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|84686203|ref|ZP_01014098.1| NAD-dependent formate dehydrogenase, alpha subunit [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84665730|gb|EAQ12205.1| NAD-dependent formate dehydrogenase, alpha subunit [Rhodobacterales
           bacterium HTCC2654]
          Length = 971

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 29/82 (35%), Gaps = 4/82 (4%)

Query: 55  RYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            +     +CI C  C   C       A+TIE        +      D     C+ CG C 
Sbjct: 184 YFTYDPAKCIVCSRCVRACEEVQGTFALTIEGRGFDSRVSAGGAMDDFLSSDCVSCGACV 243

Query: 111 EACPVDAIVEGPNFEFATETRQ 132
           +ACP   + E    E  T TR 
Sbjct: 244 QACPTATLQEKSVAELGTPTRS 265


>gi|99080237|ref|YP_612391.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ruegeria sp. TM1040]
 gi|99036517|gb|ABF63129.1| 4Fe-4S ferredoxin iron-sulfur binding [Ruegeria sp. TM1040]
          Length = 652

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 9/82 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + C  C  C ++CP+ A+                +       C+ CGLC  ACP DAI
Sbjct: 500 DTDACTLCLSCVSLCPSGALGDNED---------LPQLRFQEDACLQCGLCANACPEDAI 550

Query: 119 VEGPNFEFATETRQELYYDKER 140
              P    A     ++  ++E 
Sbjct: 551 TFAPRLNLAPSALDQIVLNEEE 572



 Score = 37.4 bits (85), Expect = 0.76,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 18/55 (32%), Gaps = 11/55 (20%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             C  C   CP  AIT                  ID + C  CG C   CP  AI
Sbjct: 279 TGCTRCLDACPTGAITPNGDSVA-----------IDPMICAGCGACASLCPSGAI 322


>gi|325295599|ref|YP_004282113.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325066047|gb|ADY74054.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 58

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 10/65 (15%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
             +    E CI C  C ++CP  AI      +          Y+I    CI CG C E C
Sbjct: 1   MAHKIDPELCIGCGACASVCPTNAIHPTDDGK----------YEIVPEDCIDCGACVEVC 50

Query: 114 PVDAI 118
           P DAI
Sbjct: 51  PTDAI 55



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%)

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPN--FEFATET 130
           + ID   CI CG C   CP +AI    +  +E   E 
Sbjct: 3   HKIDPELCIGCGACASVCPTNAIHPTDDGKYEIVPED 39


>gi|229101345|ref|ZP_04232089.1| formate dehydrogenase [Bacillus cereus Rock3-28]
 gi|228682050|gb|EEL36183.1| formate dehydrogenase [Bacillus cereus Rock3-28]
          Length = 978

 Score = 50.5 bits (119), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +        +    R +
Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWNLDRPRVI 182

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
             +   I+   C+ CG C   CP +A++E
Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211



 Score = 40.5 bits (93), Expect = 0.084,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKVHNTVHMMEIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|310643155|ref|YP_003947913.1| molybdopterin oxidoreductase family protein [Paenibacillus polymyxa
           SC2]
 gi|309248105|gb|ADO57672.1| Molybdopterin oxidoreductase family protein [Paenibacillus polymyxa
           SC2]
          Length = 980

 Score = 50.5 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+           + +   Y     +CIAC  C  +C    +             R
Sbjct: 123 HQKYPY--RPKVDPTEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSLDWEAERPR 180

Query: 93  TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120
            +  +   I+   C+ CG C   CP +A++E
Sbjct: 181 VIWDEGVAINDSSCVSCGQCVTVCPCNALME 211



 Score = 38.5 bits (88), Expect = 0.27,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 22/71 (30%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+    A+ + IE     +               Y  D  +
Sbjct: 91  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYRPKVDPTEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|310827037|ref|YP_003959394.1| hypothetical protein ELI_1445 [Eubacterium limosum KIST612]
 gi|308738771|gb|ADO36431.1| hypothetical protein ELI_1445 [Eubacterium limosum KIST612]
          Length = 259

 Score = 50.5 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 26/79 (32%), Gaps = 11/79 (13%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                  E+CI C LCE  C A  I +E G              +    CI CG C   C
Sbjct: 7   HHIKIDREKCIGCGLCEKDCVAHNIALEDGKA-----------RVRAQDCILCGHCVAVC 55

Query: 114 PVDAIVEGPNFEFATETRQ 132
           P  A+      E     R 
Sbjct: 56  PKAAVAISGYGEAPVPDRG 74


>gi|291532647|emb|CBL05760.1| Uncharacterized conserved protein [Megamonas hypermegale ART12/1]
          Length = 331

 Score = 50.5 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 34/96 (35%), Gaps = 12/96 (12%)

Query: 28  FKAKTTINY-PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC 86
           F    T                G++ L   P   + C+AC  C   CP +AITI      
Sbjct: 233 FAKPHTYKSMQDTYVPKFILKLGQNQLTSKPVINKNCVACGRCSHHCPPKAITIIDKKV- 291

Query: 87  HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                     +ID  KCI C  CQE CP  A+    
Sbjct: 292 ----------NIDYQKCIRCYCCQELCPHQAVDLKD 317


>gi|288932026|ref|YP_003436086.1| ferredoxin-dependent glutamate synthase [Ferroglobus placidus DSM
           10642]
 gi|288894274|gb|ADC65811.1| ferredoxin-dependent glutamate synthase [Ferroglobus placidus DSM
           10642]
          Length = 479

 Score = 50.5 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 22/63 (34%), Gaps = 10/63 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +RCI C  C   CP +A+  E                     C+ CG C + CP  AI
Sbjct: 8   DRDRCIKCLRCVRYCPTEALGEEDKMPVVKKQ----------TACVGCGNCVDVCPAYAI 57

Query: 119 VEG 121
              
Sbjct: 58  QVS 60



 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           ID  +CI C  C   CP +A+ E  
Sbjct: 7   IDRDRCIKCLRCVRYCPTEALGEED 31


>gi|228916202|ref|ZP_04079772.1| formate dehydrogenase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228843400|gb|EEM88478.1| formate dehydrogenase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
          Length = 954

 Score = 50.5 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+E          +     Y     +CIAC  C  +C    +             R
Sbjct: 98  HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 155

Query: 93  TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120
            +  +   I+   C+ CG C   CP +A++E
Sbjct: 156 VIWDEGVSINDSSCVSCGQCVTICPCNALME 186



 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 66  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 125

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 126 CIACGQCVEVC 136


>gi|147678983|ref|YP_001213198.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit
           [Pelotomaculum thermopropionicum SI]
 gi|146275080|dbj|BAF60829.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit
           [Pelotomaculum thermopropionicum SI]
          Length = 617

 Score = 50.5 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 10/68 (14%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           AL  Y   +E+C  C  C   CPA AI  E              + ID+ KCI CG C +
Sbjct: 558 ALLVYVIDQEKCTGCGACARACPAGAIAGEKKQP----------HVIDVEKCIKCGSCIQ 607

Query: 112 ACPVDAIV 119
            C  +AI 
Sbjct: 608 KCKFEAIY 615



 Score = 42.4 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 8/62 (12%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
            I             + Y ID  KC  CG C  ACP  AI        A E +Q    D 
Sbjct: 545 HIVDKRCPAGVCSALLVYVIDQEKCTGCGACARACPAGAI--------AGEKKQPHVIDV 596

Query: 139 ER 140
           E+
Sbjct: 597 EK 598


>gi|20093897|ref|NP_613744.1| ferredoxin [Methanopyrus kandleri AV19]
 gi|19886838|gb|AAM01674.1| Ferredoxin [Methanopyrus kandleri AV19]
          Length = 252

 Score = 50.5 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 34/102 (33%), Positives = 45/102 (44%), Gaps = 13/102 (12%)

Query: 31  KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT 90
           + T +    K       R +  LR+    ++RCIAC+LCE ICP +A  I+         
Sbjct: 103 RVTKDSIEVKLEEVDVIRRKFVLRKAILRKDRCIACRLCEQICPVEAPNIDK-------- 154

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
                  ID  KCI C  C+ ACPVDAIV           R+
Sbjct: 155 -----LRIDEDKCIGCKACEHACPVDAIVIERTLTPPEFERE 191



 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 3/79 (3%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           + +    E++CI CK CE  CP  AI IE      +  R     ++D   CI C +C E 
Sbjct: 152 IDKLRIDEDKCIGCKACEHACPVDAIVIERTLTPPEFER---EIELDQDMCIGCEVCVEV 208

Query: 113 CPVDAIVEGPNFEFATETR 131
           CPVDA+    +    +  R
Sbjct: 209 CPVDAVEMEGDVANISYDR 227



 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 16/82 (19%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E+  T P F  E  L      ++ CI C++C  +CP  A+ +E               +I
Sbjct: 180 ERTLTPPEFEREIEL-----DQDMCIGCEVCVEVCPVDAVEMEGD-----------VANI 223

Query: 99  DMIKCIYCGLCQEACPVDAIVE 120
              +CI CG C   CP  AI  
Sbjct: 224 SYDRCIRCGECARNCPTGAIKI 245



 Score = 38.2 bits (87), Expect = 0.41,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 9/60 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ERC+ CK C   CP  A+T                 ++D   C+ C LC ++CPVDAI
Sbjct: 45  DPERCVGCKTCYEECPVDALTEPDSTNPP---------EVDHDACVRCRLCAKSCPVDAI 95



 Score = 33.9 bits (76), Expect = 8.0,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 15/74 (20%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---------------IDMIKC 103
             + C+ C+LC   CP  AI + SG          V+ +               +   +C
Sbjct: 76  DHDACVRCRLCAKSCPVDAIKVVSGEARVTKDSIEVKLEEVDVIRRKFVLRKAILRKDRC 135

Query: 104 IYCGLCQEACPVDA 117
           I C LC++ CPV+A
Sbjct: 136 IACRLCEQICPVEA 149


>gi|309775984|ref|ZP_07670976.1| Fe-hydrogenase large subunit family protein [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308916266|gb|EFP62014.1| Fe-hydrogenase large subunit family protein [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 504

 Score = 50.5 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV------RYDIDMIKCIYCGLCQ 110
              +E+CI C  C  +CP  AI     P         +      R +ID  KC+ CG+C 
Sbjct: 145 YIDQEKCIKCGRCMDVCPYGAINKLERPCARSCGMDAITSDELGRAEIDYDKCVSCGMCL 204

Query: 111 EACPVDAI 118
             CP  AI
Sbjct: 205 VNCPFGAI 212



 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 13/61 (21%)

Query: 61  ERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C  C    C+ +CP  AI++ +G              ID  KCI CG C + CP  AI
Sbjct: 118 DTCQGCLAHPCKEVCPKDAISMVNGKSY-----------IDQEKCIKCGRCMDVCPYGAI 166

Query: 119 V 119
            
Sbjct: 167 N 167


>gi|301059352|ref|ZP_07200279.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300446581|gb|EFK10419.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 616

 Score = 50.5 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 15/96 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            L+Y F+ +   +   ++            L  Y    E+C  C LC+  C   AI+ E 
Sbjct: 533 TLKY-FREEYIAHIKEKRCPAGVC----KQLIVYAIDPEKCTGCGLCKKNCAFGAISGEK 587

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                          ID  KC+ CG+C   C   A+
Sbjct: 588 KAPHA----------IDPEKCVKCGMCLTKCKFGAV 613


>gi|229095238|ref|ZP_04226230.1| formate dehydrogenase [Bacillus cereus Rock3-29]
 gi|229114186|ref|ZP_04243607.1| formate dehydrogenase [Bacillus cereus Rock1-3]
 gi|228669206|gb|EEL24627.1| formate dehydrogenase [Bacillus cereus Rock1-3]
 gi|228688097|gb|EEL41983.1| formate dehydrogenase [Bacillus cereus Rock3-29]
          Length = 978

 Score = 50.5 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +        +    R +
Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWNLDRPRVI 182

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
             +   I+   C+ CG C   CP +A++E
Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211



 Score = 40.5 bits (93), Expect = 0.087,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKVHNTVHMMEIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|170745440|ref|YP_001766897.1| formate dehydrogenase, alpha subunit [Methylobacterium
           radiotolerans JCM 2831]
 gi|170659041|gb|ACB28095.1| formate dehydrogenase, alpha subunit [Methylobacterium
           radiotolerans JCM 2831]
          Length = 989

 Score = 50.5 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 3/87 (3%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRY 96
             +   + R+ G+ +        + CI C LC   C   Q   +        G +    +
Sbjct: 188 ESRFPAAERWTGDFSHPAMSVNLDACIQCNLCVRACREVQVNDVIGMAYRSAGAKVVFDF 247

Query: 97  DIDM--IKCIYCGLCQEACPVDAIVEG 121
           D  M    C+ CG C +ACP  A++  
Sbjct: 248 DDPMGGSTCVACGECVQACPTGALMPS 274



 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 1/56 (1%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL-CQ 110
            P G   C+AC  C   CP  A+   +       TR           C YCG+ CQ
Sbjct: 249 DPMGGSTCVACGECVQACPTGALMPSAYLDAEHKTRTVYPDREVTSLCPYCGVGCQ 304


>gi|160888747|ref|ZP_02069750.1| hypothetical protein BACUNI_01165 [Bacteroides uniformis ATCC 8492]
 gi|270293523|ref|ZP_06199725.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides sp.
           D20]
 gi|317479507|ref|ZP_07938638.1| ferredoxin oxidoreductase [Bacteroides sp. 4_1_36]
 gi|156861646|gb|EDO55077.1| hypothetical protein BACUNI_01165 [Bacteroides uniformis ATCC 8492]
 gi|270274990|gb|EFA20850.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides sp.
           D20]
 gi|316904327|gb|EFV26150.1| ferredoxin oxidoreductase [Bacteroides sp. 4_1_36]
          Length = 1185

 Score = 50.5 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 32/90 (35%), Gaps = 15/90 (16%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGP 84
           E+G+     RG  A     N  E CI C  C  +CP                A   +   
Sbjct: 667 EQGTAKYEKRGVAAFVPEWN-AENCIQCNKCAYVCPHASIRPFVLDAEEQKGANFTQLKA 725

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                   T R  +D++ C+ CG C + CP
Sbjct: 726 VGKAFDGMTFRIQVDVLDCLGCGNCADVCP 755


>gi|116253448|ref|YP_769286.1| dihydropyrimidine dehydrogenase [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115258096|emb|CAK09197.1| putative dihydropyrimidine dehydrogenase [Rhizobium leguminosarum
           bv. viciae 3841]
          Length = 437

 Score = 50.5 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 6/94 (6%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI C  C       A    S     +       +++   +C+ 
Sbjct: 330 QYLNLNYIAKAKIDQDACIKCGRCYI-----ACEDTSHQAITNFVDGVRHFEVMDEECVG 384

Query: 106 CGLCQEACPV-DAIVEGPNFEFATETRQELYYDK 138
           C LC   CPV + I        A + R     D 
Sbjct: 385 CNLCVSVCPVENCITMEQLPAGALDKRTGRVVDP 418


>gi|13471617|ref|NP_103183.1| dihydropyrimidine dehydrogenase [Mesorhizobium loti MAFF303099]
 gi|14022359|dbj|BAB48969.1| probable oxidoreductase [Mesorhizobium loti MAFF303099]
          Length = 437

 Score = 50.5 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 6/78 (7%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI C  C       A    S             +++   +C+ 
Sbjct: 330 QYLNLNYVAKAHIDQDACIKCGRCHI-----ACEDTSHQAITSMVDGVRHFEVIEAECVG 384

Query: 106 CGLCQEACPV-DAIVEGP 122
           C LC   CPV + I   P
Sbjct: 385 CNLCVNVCPVENCITMEP 402


>gi|303242577|ref|ZP_07329054.1| hydrogenase, Fe-only [Acetivibrio cellulolyticus CD2]
 gi|302589881|gb|EFL59652.1| hydrogenase, Fe-only [Acetivibrio cellulolyticus CD2]
          Length = 566

 Score = 50.5 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 26/72 (36%), Gaps = 3/72 (4%)

Query: 55  RYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQE 111
                + +CI C  C  +C   Q +            +    +D  I    C+ CG C  
Sbjct: 140 CITRDQNKCILCGDCVRVCNEVQNVGAIDFGYRGSKMKICTAFDKPIAQSNCVGCGQCAL 199

Query: 112 ACPVDAIVEGPN 123
           ACP  AIV   N
Sbjct: 200 ACPTGAIVIKNN 211


>gi|239927772|ref|ZP_04684725.1| NADH dehydrogenase I chain G [Streptomyces ghanaensis ATCC 14672]
          Length = 286

 Score = 50.5 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 4/75 (5%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM----IKCIYCGLCQE 111
           Y    ++CI C  C   C  Q     +      G    +  + D       C+YCG C E
Sbjct: 145 YVRDYDKCILCYKCVDACGEQWQNTFAISVAGRGFDARIAVEHDAALTDSACVYCGNCIE 204

Query: 112 ACPVDAIVEGPNFEF 126
            CP  A+     F+ 
Sbjct: 205 VCPTGALSFKSEFDM 219


>gi|126652326|ref|ZP_01724502.1| hypothetical protein BB14905_00250 [Bacillus sp. B14905]
 gi|126590901|gb|EAZ85014.1| hypothetical protein BB14905_00250 [Bacillus sp. B14905]
          Length = 978

 Score = 50.5 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP++          + +   Y     +CIAC  C  +C +  +             R
Sbjct: 119 HQKYPYKPKVEP--HEVDMSHPFYRYDPNQCIACGQCVEVCQSLQVNETLSLDWEAERPR 176

Query: 93  TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120
            +      I+   C+ CG C   CP +A++E
Sbjct: 177 VIWDTGVAINDSSCVSCGQCVTVCPCNALME 207



 Score = 38.2 bits (87), Expect = 0.43,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C             Q    +     H+       Y  D  +
Sbjct: 87  RLLENHLLYCTVCDNNNGNCTLHNTAELMEIEHQKYPYKPKVEPHEVDMSHPFYRYDPNQ 146

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 147 CIACGQCVEVC 157


>gi|118478818|ref|YP_895969.1| formate dehydrogenase, subunit alpha [Bacillus thuringiensis str.
           Al Hakam]
 gi|118418043|gb|ABK86462.1| formate dehydrogenase, alpha subunit [Bacillus thuringiensis str.
           Al Hakam]
          Length = 1012

 Score = 50.5 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+E          +     Y     +CIAC  C  +C    +             R
Sbjct: 156 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 213

Query: 93  TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120
            +  +   I+   C+ CG C   CP +A++E
Sbjct: 214 VIWDEGVSINDSSCVSCGQCVTICPCNALME 244



 Score = 39.3 bits (90), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 124 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 183

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 184 CIACGQCVEVC 194


>gi|113970403|ref|YP_734196.1| electron transport complex protein RnfC [Shewanella sp. MR-4]
 gi|113885087|gb|ABI39139.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella
           sp. MR-4]
          Length = 809

 Score = 50.5 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 42/126 (33%), Gaps = 11/126 (8%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
           TI  P  KG+          +   P   + CI C  C       A      P+      +
Sbjct: 349 TIQVPILKGTNCILVPSSQEIGTTPEE-KACIRCGECA-----NACPALLLPQQLFWHAK 402

Query: 93  TVRYD----IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRW 148
              YD     ++  CI CG C   CP   I     +  A    ++   +K +      R+
Sbjct: 403 AEEYDKAASYNLKDCIECGCCSYVCP-SDIPLVEYYRIAKSALKQAADEKHQAERAKLRF 461

Query: 149 ESEIVR 154
           E+ I R
Sbjct: 462 EARIQR 467


>gi|114047405|ref|YP_737955.1| electron transport complex protein RnfC [Shewanella sp. MR-7]
 gi|113888847|gb|ABI42898.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella
           sp. MR-7]
          Length = 799

 Score = 50.5 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 42/126 (33%), Gaps = 11/126 (8%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
           TI  P  KG+          +   P   + CI C  C       A      P+      +
Sbjct: 349 TIQVPILKGTNCILVPSSQEIGTTPEE-KACIRCGECA-----NACPALLLPQQLFWHAK 402

Query: 93  TVRYD----IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRW 148
              YD     ++  CI CG C   CP   I     +  A    ++   +K +      R+
Sbjct: 403 AEEYDKAASYNLKDCIECGCCSYVCP-SDIPLVEYYRIAKSALKQAADEKHQAERAKLRF 461

Query: 149 ESEIVR 154
           E+ I R
Sbjct: 462 EARIQR 467


>gi|325958330|ref|YP_004289796.1| glutamate synthase (NADPH) [Methanobacterium sp. AL-21]
 gi|325329762|gb|ADZ08824.1| Glutamate synthase (NADPH) [Methanobacterium sp. AL-21]
          Length = 503

 Score = 50.5 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 32/96 (33%), Gaps = 15/96 (15%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                 EE C  C  C   CP     I               Y +    C+ C +C+E C
Sbjct: 25  MCDNRDEELCKNCYSCFNNCPHDVYEIIDDEP----------YPLHHENCVGCRICEEMC 74

Query: 114 PVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWE 149
           P +AI          E R+   + +  ++  G + E
Sbjct: 75  PNNAI----EVNAVPEDRRN-VWTQSDIVEIGRKSE 105


>gi|228932018|ref|ZP_04094910.1| formate dehydrogenase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228827601|gb|EEM73343.1| formate dehydrogenase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 978

 Score = 50.5 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +             R +
Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
                 I+   C+ CG C   CP +A++E
Sbjct: 183 WDHGVSINDSSCVSCGQCVTVCPCNALME 211



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|169351005|ref|ZP_02867943.1| hypothetical protein CLOSPI_01782 [Clostridium spiroforme DSM 1552]
 gi|169292067|gb|EDS74200.1| hypothetical protein CLOSPI_01782 [Clostridium spiroforme DSM 1552]
          Length = 507

 Score = 50.5 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110
              +++CI C LC+  CP  AI  +  P         +  D      I+  KC+ CG+C 
Sbjct: 144 YIDQDKCIKCGLCKNNCPYDAILKKERPCAKACGMNAIESDEYGNAHINYDKCVSCGMCL 203

Query: 111 EACPVDAI 118
            +CP  AI
Sbjct: 204 VSCPFGAI 211



 Score = 42.4 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 28/92 (30%), Gaps = 11/92 (11%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEER------CIACKLCEAICPAQAITIESGPRCHDGTR 91
            E    S          +Y            C  C+  +           + P      +
Sbjct: 74  DEPAPISKGIEESIIADKYYEPPLINIIKFACNKCEENKYEVSNGCQACLAHPCIEICPK 133

Query: 92  RTVRYD-----IDMIKCIYCGLCQEACPVDAI 118
             + +      ID  KCI CGLC+  CP DAI
Sbjct: 134 NAISFKNGKAYIDQDKCIKCGLCKNNCPYDAI 165


>gi|157364729|ref|YP_001471496.1| dihydroorotate dehydrogenase [Thermotoga lettingae TMO]
 gi|157315333|gb|ABV34432.1| dihydroorotate dehydrogenase [Thermotoga lettingae TMO]
          Length = 386

 Score = 50.5 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 25/83 (30%), Gaps = 12/83 (14%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           K   S        L +    +  C +C  C+ +C   A                    + 
Sbjct: 311 KAILSNEQIDRRHLFKAQINQALCTSCGTCQKVCIYDAPYQSEKS------------YVI 358

Query: 100 MIKCIYCGLCQEACPVDAIVEGP 122
              C  CGLC + CPV AI    
Sbjct: 359 SELCDGCGLCVKLCPVKAIEMVK 381


>gi|123426665|ref|XP_001307088.1| pyruvate:ferredoxin oxidoreductase C [Trichomonas vaginalis G3]
 gi|121888697|gb|EAX94158.1| pyruvate:ferredoxin oxidoreductase C [Trichomonas vaginalis G3]
          Length = 1189

 Score = 50.5 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 49/146 (33%), Gaps = 19/146 (13%)

Query: 31  KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE-------SG 83
             T   P +   +S   +   A        ++CI C  C   C    I  +         
Sbjct: 673 PITARIPRDGLGSSKYEKRGIATNIPVWDADKCIQCNTCAYSCAHAVIRPQLMKHGKGPE 732

Query: 84  PRCHDGTRRTVRYD----IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE---TRQELYY 136
                 +++   YD    +    C+ C +C E CP  A+     F  ATE   T+    Y
Sbjct: 733 GVKVLQSKKFKGYDFAITVSAHDCLSCQVCIEKCPTKALS----FPLATEEVVTKAAALY 788

Query: 137 DK-ERLLNNGDRWESEIVRNIVTDSP 161
           DK  +L +     E++   N   +  
Sbjct: 789 DKFAKLPDIDALREADPALNESLEKK 814


>gi|5650750|emb|CAB51635.1| putative NADH-ubiquinone oxidoreductase subunit [Sinorhizobium
           meliloti]
          Length = 853

 Score = 50.5 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 3/80 (3%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           +   S   R    +    N   RCI C+ C  +C      +  G            ++  
Sbjct: 128 RVFHSKDIRLSPVIIMNVN---RCIQCQRCVRMCEEVVGAVALGTVEKGMDTAVTGFEGS 184

Query: 100 MIKCIYCGLCQEACPVDAIV 119
           +  C  CG C E CPV A++
Sbjct: 185 LASCDQCGNCVEVCPVGALM 204


>gi|78358241|ref|YP_389690.1| iron-sulfur cluster-binding/ATPase domain-containing protein
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78220646|gb|ABB39995.1| iron-sulfur cluster-binding/ATPase domain protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 308

 Score = 50.5 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 15/89 (16%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93
           I  P  + +        +A +        CI C  C   C   A+T+ +  +        
Sbjct: 44  ILQPEVRRTV-----DFYAGQLASVDPLLCIGCGSCADHCRFDAVTVAADGK-------- 90

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
             + I    C  C +C   CP  A+    
Sbjct: 91  --WQIRPEFCEGCAVCLHVCPAQAVTMND 117


>gi|159116967|ref|XP_001708704.1| Pyruvate-flavodoxin oxidoreductase [Giardia lamblia ATCC 50803]
 gi|960283|gb|AAA74894.1| pyruvate:ferredoxin oxidoreductase [Giardia intestinalis]
 gi|157436817|gb|EDO81030.1| Pyruvate-flavodoxin oxidoreductase [Giardia lamblia ATCC 50803]
          Length = 1253

 Score = 50.5 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 33/105 (31%), Gaps = 32/105 (30%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK------------------ 102
           E CI C  C   CP  A+                 +++  +K                  
Sbjct: 722 ENCIQCGFCSVQCPHAAVRCFVMNEDAKPDNVPEDFEMLDMKGKLAAVNSDSSKIKFRVQ 781

Query: 103 -----CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLL 142
                C  CG+C EACP DA+   P          +   DK++ L
Sbjct: 782 VSPLDCRGCGVCVEACPKDALAMTPI---------DTVLDKQQKL 817


>gi|24375983|ref|NP_720026.1| iron-sulfur cluster-binding protein [Shewanella oneidensis MR-1]
 gi|24350982|gb|AAN57470.1|AE015883_1 iron-sulfur cluster-binding protein [Shewanella oneidensis MR-1]
          Length = 558

 Score = 50.5 bits (119), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 30/82 (36%), Gaps = 9/82 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E+C  C  C AICP  A+                        C+ CGLC+ ACP   I
Sbjct: 424 NVEKCTLCMSCVAICPTMALQDGGDKPALH---------FIEQNCVQCGLCESACPEKVI 474

Query: 119 VEGPNFEFATETRQELYYDKER 140
              P   F    RQ+ +  KE 
Sbjct: 475 SLTPQINFDKAARQQQHTLKEE 496



 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 11/53 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C   CPA AI+  +              ++D   C   G C   CP  AI
Sbjct: 200 CNRCLNFCPADAISSVAKK-----------IEVDPYLCHGAGSCASTCPTGAI 241


>gi|330998795|ref|ZP_08322523.1| 2-oxoacid:acceptor oxidoreductase, delta subunit,
           pyruvate/2-ketoisovalerate family [Parasutterella
           excrementihominis YIT 11859]
 gi|329576292|gb|EGG57808.1| 2-oxoacid:acceptor oxidoreductase, delta subunit,
           pyruvate/2-ketoisovalerate family [Parasutterella
           excrementihominis YIT 11859]
          Length = 468

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 21/62 (33%), Gaps = 8/62 (12%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C+ C  C  +CP  A+                 Y  +   C  CG+C   CP  AI   
Sbjct: 413 NCLQCDNCYGVCPDNAVIKTGDDNVP--------YIFNYDYCKGCGVCASECPCGAIKME 464

Query: 122 PN 123
           P 
Sbjct: 465 PE 466


>gi|325281877|ref|YP_004254419.1| Fe-S cluster domain-containing protein [Odoribacter splanchnicus
           DSM 20712]
 gi|324313686|gb|ADY34239.1| Fe-S cluster domain protein [Odoribacter splanchnicus DSM 20712]
          Length = 568

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 25/65 (38%), Gaps = 11/65 (16%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L+      E C  C  C   CP +AI IE                I   +CIYCG C + 
Sbjct: 3   LKPIYTEPENCQDCYKCVRECPVKAIQIEDNKAY-----------IIEERCIYCGHCTQV 51

Query: 113 CPVDA 117
           CP  A
Sbjct: 52  CPTGA 56



 Score = 34.7 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 12/32 (37%)

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
              C  C  C   CPV AI    N  +  E R
Sbjct: 10  PENCQDCYKCVRECPVKAIQIEDNKAYIIEER 41


>gi|313681399|ref|YP_004059137.1| NADH dehydrogenase subunit g [Sulfuricurvum kujiense DSM 16994]
 gi|313154259|gb|ADR32937.1| NADH dehydrogenase subunit G [Sulfuricurvum kujiense DSM 16994]
          Length = 751

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 1/83 (1%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
            + R              CI C+ C  +C           +        +  + D + C 
Sbjct: 127 DQHRKIEHWGLINYDPSLCILCEKCVHVCNEIIGDDAIELQFGGYKSSVIPKNSDALDCT 186

Query: 105 YCGLCQEACPVDAIVEGPNFEFA 127
           +CG C   CPV A+V   NF+++
Sbjct: 187 FCGECIAVCPVGALV-SSNFQYS 208


>gi|228934847|ref|ZP_04097678.1| formate dehydrogenase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228824747|gb|EEM70548.1| formate dehydrogenase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 954

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+E          +     Y     +CIAC  C  +C    +             R
Sbjct: 98  HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 155

Query: 93  TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120
            +  +   I+   C+ CG C   CP +A++E
Sbjct: 156 VIWDEGVSINDSSCVSCGQCVTICPCNALME 186



 Score = 39.3 bits (90), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 66  RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 125

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 126 CIACGQCVEVC 136


>gi|169828796|ref|YP_001698954.1| formate dehydrogenase subunit alpha [Lysinibacillus sphaericus
           C3-41]
 gi|168993284|gb|ACA40824.1| Formate dehydrogenase alpha chain [Lysinibacillus sphaericus C3-41]
          Length = 978

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP++          + +   Y     +CIAC  C  +C +  +             R
Sbjct: 119 HQKYPYKPKVEP--HEVDMSHPFYRYDPNQCIACGQCVEVCQSLQVNETLSLDWEAERPR 176

Query: 93  TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120
            +      I+   C+ CG C   CP +A++E
Sbjct: 177 VIWDTGVAINDSSCVSCGQCVTVCPCNALME 207



 Score = 38.2 bits (87), Expect = 0.44,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C             Q    +     H+       Y  D  +
Sbjct: 87  RLLENHLLYCTVCDNNNGNCTLHNTAELMEIEHQKYPYKPKVEPHEVDMSHPFYRYDPNQ 146

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 147 CIACGQCVEVC 157


>gi|146342635|ref|YP_001207683.1| putative glutamate synthase (NADPH) 2-ketoglutarate NADP
           oxidoreductase subunit gamma (korC-like) [Bradyrhizobium
           sp. ORS278]
 gi|146195441|emb|CAL79466.1| putative glutamate synthase (NADPH); putative 2-ketoglutarate: NADP
           oxidoreductase, gamma subunit (korC-like)
           [Bradyrhizobium sp. ORS278]
          Length = 599

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 30/107 (28%), Gaps = 20/107 (18%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
             K +     R  +   +       CI C  C  ICP   IT        D   R     
Sbjct: 475 DVKLALGEAHRCLNCDVQTVFSNTLCIECDACADICPMDCITFTENGEEADLRSRLKAPS 534

Query: 98  IDMIK--------------------CIYCGLCQEACPVDAIVEGPNF 124
           +   +                    C++CGLC E CP  A      F
Sbjct: 535 VHPDQSLYVSSDLKTGRVMVKDEDVCLHCGLCAERCPTGAWDMQKYF 581



 Score = 34.7 bits (78), Expect = 4.2,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query: 103 CIYCGLCQEACPVDAIVEGPNFEFAT 128
           CI C  C + CP+D I    N E A 
Sbjct: 500 CIECDACADICPMDCITFTENGEEAD 525


>gi|330889574|gb|EGH22235.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv. mori
           str. 301020]
          Length = 290

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 10/75 (13%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           RG    +     E  CI C  C   CP  AI   +           + + + + +C  C 
Sbjct: 76  RGAAPAQVAFIREAECIGCTKCIQACPVDAIVGAAK----------LMHTVIVDECTGCD 125

Query: 108 LCQEACPVDAIVEGP 122
           LC   CPVD I   P
Sbjct: 126 LCVAPCPVDCIEMHP 140


>gi|320161182|ref|YP_004174406.1| NAD-reducing hydrogenase subunit [Anaerolinea thermophila UNI-1]
 gi|319995035|dbj|BAJ63806.1| NAD-reducing hydrogenase subunit [Anaerolinea thermophila UNI-1]
          Length = 594

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 39/96 (40%), Gaps = 15/96 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            L+YF        + +EK   +   R   AL  Y    E C  C +C   CP  AIT E 
Sbjct: 511 TLKYFRHEY--EAHIYEKRCPAKVCR---ALITYEIVPETCTGCTVCARNCPVNAITGE- 564

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                    R   + ID   C+ CG+C + C  +AI
Sbjct: 565 ---------RRQPHKIDPDICVRCGICMQVCNFNAI 591


>gi|322421844|ref|YP_004201067.1| molybdopterin oxidoreductase [Geobacter sp. M18]
 gi|320128231|gb|ADW15791.1| molybdopterin oxidoreductase [Geobacter sp. M18]
          Length = 821

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 20/64 (31%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              RCI C  C  IC                  +        + C +CG C   CPV A+
Sbjct: 143 DMNRCIHCGKCARICDEIVSYGAYTFINRGIEAKMGTEFDGPLNCEFCGSCVSVCPVGAL 202

Query: 119 VEGP 122
              P
Sbjct: 203 NSRP 206



 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/74 (18%), Positives = 18/74 (24%), Gaps = 8/74 (10%)

Query: 48  RGEHALRRYPNGEERCIAC---KLC-----EAICPAQAITIESGPRCHDGTRRTVRYDID 99
           R              C  C     C            A         H+        + D
Sbjct: 84  RKLVLELLLLKHPIDCPVCDAAGDCDLQNLTYEYKVNANRFTDEKFNHEIDYENPLIERD 143

Query: 100 MIKCIYCGLCQEAC 113
           M +CI+CG C   C
Sbjct: 144 MNRCIHCGKCARIC 157


>gi|253314649|ref|ZP_04837862.1| formate dehydrogenase-like protein [Staphylococcus aureus subsp.
           aureus str. CF-Marseille]
          Length = 869

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 13/96 (13%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P+EK               Y     +CI C  C   C    +             R +  
Sbjct: 16  PYEKDYGP----------FYRYDPNQCILCGRCVEACQDIEVNETIRIDWDREHPRVIWD 65

Query: 97  D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           +   I+   C+ CG C   CP +A++E      A  
Sbjct: 66  NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGY 101



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 11/36 (30%)

Query: 78  ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                             Y  D  +CI CG C EAC
Sbjct: 7   HQTYEYKEKPYEKDYGPFYRYDPNQCILCGRCVEAC 42


>gi|229491834|ref|ZP_04385655.1| ferredoxin--NADP+ reductase [Rhodococcus erythropolis SK121]
 gi|229321515|gb|EEN87315.1| ferredoxin--NADP+ reductase [Rhodococcus erythropolis SK121]
          Length = 575

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 35/104 (33%), Gaps = 12/104 (11%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + C +   C   CP   I                   ID   C+ CG C  ACP
Sbjct: 1   MPHVVTQSCCSDASCVYACPVNCIHPTPDEPD---FLTAEMLHIDPQACVDCGACVSACP 57

Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158
           VDAIV  P  +     R    +    L  N D ++ E  R ++ 
Sbjct: 58  VDAIV--PESKLTDPQR---VF----LSINADFYKEERPRPLLA 92


>gi|226309118|ref|YP_002769078.1| ferredoxin--NADP(+) reductase [Rhodococcus erythropolis PR4]
 gi|226188235|dbj|BAH36339.1| putative ferredoxin--NADP(+) reductase [Rhodococcus erythropolis
           PR4]
          Length = 575

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 35/104 (33%), Gaps = 12/104 (11%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + C +   C   CP   I                   ID   C+ CG C  ACP
Sbjct: 1   MPHVVTQSCCSDASCVYACPVNCIHPTPDEPD---FLTAEMLHIDPQACVDCGACVSACP 57

Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158
           VDAIV  P  +     R    +    L  N D ++ E  R ++ 
Sbjct: 58  VDAIV--PESKLTDPQR---VF----LSINADFYKEERPRPLLA 92


>gi|229543514|ref|ZP_04432574.1| formate dehydrogenase, alpha subunit [Bacillus coagulans 36D1]
 gi|229327934|gb|EEN93609.1| formate dehydrogenase, alpha subunit [Bacillus coagulans 36D1]
          Length = 980

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YPF     +     +++   Y     +CIAC  C   C    +             R
Sbjct: 123 HQKYPF--TPKTDASGVDYSNPFYRYDPNQCIACGRCVEACQNLQVNETLSIDWEAERPR 180

Query: 93  TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120
            +  +   I+   C+ CG C   CP +A++E
Sbjct: 181 VIWDNGVPINESSCVSCGHCVTVCPCNALME 211



 Score = 37.4 bits (85), Expect = 0.59,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 21/81 (25%), Gaps = 11/81 (13%)

Query: 44  SPRFRGEHALRRYPNGEERCIAC----KLC-------EAICPAQAITIESGPRCHDGTRR 92
           S   R E   R   N    C  C      C       +     Q                
Sbjct: 81  SEAARHEAMDRILANHLLYCTVCDNNNGNCIVHNTTEKMGIEHQKYPFTPKTDASGVDYS 140

Query: 93  TVRYDIDMIKCIYCGLCQEAC 113
              Y  D  +CI CG C EAC
Sbjct: 141 NPFYRYDPNQCIACGRCVEAC 161


>gi|307304400|ref|ZP_07584151.1| NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding
           [Sinorhizobium meliloti BL225C]
 gi|306902602|gb|EFN33196.1| NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding
           [Sinorhizobium meliloti BL225C]
          Length = 853

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 3/80 (3%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           +   S   R    +    N   RCI C+ C  +C      +  G            ++  
Sbjct: 128 RVFHSKDIRLSPVIIMNVN---RCIQCQRCVRMCEEVVGAVALGTVEKGMDTAVTGFEGS 184

Query: 100 MIKCIYCGLCQEACPVDAIV 119
           +  C  CG C E CPV A++
Sbjct: 185 LASCDQCGNCVEVCPVGALM 204


>gi|257875824|ref|ZP_05655477.1| respiratory-chain NADH dehydrogenase 51 kDa subunit [Enterococcus
           casseliflavus EC20]
 gi|257809990|gb|EEV38810.1| respiratory-chain NADH dehydrogenase 51 kDa subunit [Enterococcus
           casseliflavus EC20]
          Length = 445

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 35/109 (32%), Gaps = 10/109 (9%)

Query: 13  LKEFVGA-------FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
           L +F G          L      K+  T+  P  KG  S      +    +   E  CI 
Sbjct: 313 LIDFAGGFQGAPSKLILGGPMMGKSVKTLKVPVTKG--SNGIVVFNEETDWLYAENPCIR 370

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           C  C   CP   + +E       G       ++    CI CG C   CP
Sbjct: 371 CNKCVEACPMLLMPMEIDQFYRAGD-YQKCEELLAEACINCGACTFVCP 418



 Score = 35.5 bits (80), Expect = 2.3,   Method: Composition-based stats.
 Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 4/41 (9%)

Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLN 143
           CI C  C EACP+  +      E     R   Y   E LL 
Sbjct: 368 CIRCNKCVEACPMLLMPM----EIDQFYRAGDYQKCEELLA 404


>gi|254461883|ref|ZP_05075299.1| dihydroorotate dehydrogenase family protein [Rhodobacterales
           bacterium HTCC2083]
 gi|206678472|gb|EDZ42959.1| dihydroorotate dehydrogenase family protein [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 434

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 8/95 (8%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI+C  C A C       E              + +   +C+ 
Sbjct: 330 QYLNLNYIAKAKIDQDLCISCGRCFAAC-------EDTSHQAIAMSEDRVFSVIDAECVA 382

Query: 106 CGLCQEACPVD-AIVEGPNFEFATETRQELYYDKE 139
           C LC   CPV+  I        A + R +   +K+
Sbjct: 383 CNLCVNVCPVETCITMEKMPVGAVDPRTDRVVEKD 417


>gi|188533914|ref|YP_001907711.1| Electron transport complex protein [Erwinia tasmaniensis Et1/99]
 gi|226735445|sp|B2VEQ3|RNFC_ERWT9 RecName: Full=Electron transport complex protein rnfC
 gi|188028956|emb|CAO96822.1| Electron transport complex protein [Erwinia tasmaniensis Et1/99]
          Length = 804

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 47/133 (35%), Gaps = 8/133 (6%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
           T++ P  K +          +      E+ CI C  C   CPA A+  +       G   
Sbjct: 348 TLDVPVVKITNCILAPAASEM-GQNEAEQGCIRCSACADACPA-ALLPQQLYWYSRGGDH 405

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF--EFATETRQELYYDKERLLNNGDRWES 150
                 ++  CI CG C   CP   I     +  E A     +L  ++  L  N  R+E+
Sbjct: 406 DKARAHNIADCIECGACAYVCP-SNIPLVQYYRQEKAEIQAIDLEAERAALAKN--RFEA 462

Query: 151 EIVRNIVTDSPYR 163
              + +  +   R
Sbjct: 463 R-QQRLEREKAAR 474


>gi|16263281|ref|NP_436074.1| NuoG2 NADH I chain G 2 [Sinorhizobium meliloti 1021]
 gi|17380454|sp|P56914|NUOG2_RHIME RecName: Full=NADH-quinone oxidoreductase subunit G 2; AltName:
           Full=NADH dehydrogenase I subunit G 2; AltName:
           Full=NDH-1 subunit G 2
 gi|14523958|gb|AAK65486.1| NuoG2 NADH:quinone oxidoreductase subunit 7 (chain G2)
           [Sinorhizobium meliloti 1021]
          Length = 853

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 3/80 (3%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           +   S   R    +    N   RCI C+ C  +C      +  G            ++  
Sbjct: 128 RVFHSKDIRLSPVIIMNVN---RCIQCQRCVRMCEEVVGAVALGTVEKGMDTAVTGFEGS 184

Query: 100 MIKCIYCGLCQEACPVDAIV 119
           +  C  CG C E CPV A++
Sbjct: 185 LASCDQCGNCVEVCPVGALM 204


>gi|312602354|ref|YP_004022199.1| dihydropyrimidine dehydrogenase [NADP+] subunit beta [Burkholderia
           rhizoxinica HKI 454]
 gi|312169668|emb|CBW76680.1| Dihydropyrimidine dehydrogenase [NADP+] beta subunit (EC 1.3.1.2)
           [Burkholderia rhizoxinica HKI 454]
          Length = 425

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 6/76 (7%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++       +    + +CI C LC   C   A    +G R          +++    C+ 
Sbjct: 328 KYLNLQYDIKARIDQSKCIQCGLCHIACEDTAHQAITGYRDGR-----RHFEVIDANCVG 382

Query: 106 CGLCQEACPV-DAIVE 120
           C LC   CPV   I  
Sbjct: 383 CNLCMHVCPVDQCITM 398


>gi|307265544|ref|ZP_07547099.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306919498|gb|EFN49717.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 1175

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 31/143 (21%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTRRTV 94
            G+ +   RG           + CI C  C  +CP  AI     T E      +G +   
Sbjct: 667 PGTAAYEKRGIAVDVPEWQ-IDNCIQCNQCAFVCPHAAIRPFLLTEEEVKNAPEGFKVKK 725

Query: 95  -----------RYDIDMIKCIYCGLCQEACP--VDAIVEGP---------NFEFATE-TR 131
                      R  + ++ C  CG+C   CP    A+V  P         N+E+A   + 
Sbjct: 726 AIGKGFEGLYYRIQVSVLDCTGCGVCVNECPAKEKALVMKPLETQMEEAKNWEYAMTLSP 785

Query: 132 QELYYDKERLLNNGDRWESEIVR 154
           +E    KE     G ++E  ++ 
Sbjct: 786 KENPMSKE--TVKGSQFEKPLLE 806


>gi|258515175|ref|YP_003191397.1| Electron transfer flavoprotein alpha/beta- subunit
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778880|gb|ACV62774.1| Electron transfer flavoprotein alpha/beta- subunit
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 441

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 10/63 (15%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           N    CI C+ C + CP  A+ I+                +    CI CG C   CPV A
Sbjct: 4   NVSNTCIGCQACISACPHGALYIDDNG----------LCKVIAKNCIECGGCIGVCPVGA 53

Query: 118 IVE 120
           I  
Sbjct: 54  ISL 56



 Score = 34.7 bits (78), Expect = 4.5,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 10/21 (47%)

Query: 103 CIYCGLCQEACPVDAIVEGPN 123
           CI C  C  ACP  A+    N
Sbjct: 9   CIGCQACISACPHGALYIDDN 29


>gi|257462646|ref|ZP_05627056.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. D12]
 gi|317060293|ref|ZP_07924778.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. D12]
 gi|313685969|gb|EFS22804.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. D12]
          Length = 1190

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 35/106 (33%), Gaps = 19/106 (17%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI----ESGPRCHDGTRRT 93
           FE G+ S   RG           + CI C  C  +CP  AI      E   +       T
Sbjct: 677 FENGTASFEKRGVAVEVPEWI-ADNCIQCNQCSYVCPHAAIRPFLITEEEKKASPVEFVT 735

Query: 94  V------------RYDIDMIKCIYCGLCQEACPVD--AIVEGPNFE 125
                        R  +  + C+ CG C   CP    A++  P  E
Sbjct: 736 KKAVGKGLEDVSYRIQVTPLDCVGCGSCVNVCPAPGKALIMKPIAE 781


>gi|226940149|ref|YP_002795222.1| electron transport complex protein RnfC [Laribacter hongkongensis
           HLHK9]
 gi|226715075|gb|ACO74213.1| electron transport complex protein RnfC [Laribacter hongkongensis
           HLHK9]
          Length = 620

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 33/102 (32%), Gaps = 11/102 (10%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            CI C  C   CP     ++         +     +  +  CI CG C   CP   I   
Sbjct: 362 PCIRCGECAKACPTDLQPMDLY-WFAKSRQTGRAQEHHLFDCIECGACSYVCPSQ-IPLV 419

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
             + FA        +  ER     D+  +EI R       +R
Sbjct: 420 DYYRFAKSD----IWAAER-----DKKAAEIARTRHEFREFR 452


>gi|171058834|ref|YP_001791183.1| putative glutamate synthase (NADPH) small subunit [Leptothrix
           cholodnii SP-6]
 gi|170776279|gb|ACB34418.1| Glutamate synthase (NADH) [Leptothrix cholodnii SP-6]
          Length = 571

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 9/59 (15%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            C  C  C  +CP  A+      R         R++I++  C  CG+C   CP  AI  
Sbjct: 517 NCFECDNCYGVCPDNAVIKLGPGR---------RFEINLDYCKGCGMCAAECPCGAIEM 566


>gi|304314560|ref|YP_003849707.1| energy-converting hydrogenase A, subunit P [Methanothermobacter
           marburgensis str. Marburg]
 gi|5734542|emb|CAB52771.1| polyferredoxin [Methanothermobacter thermautotrophicus]
 gi|302588019|gb|ADL58394.1| energy-converting hydrogenase A, subunit P [Methanothermobacter
           marburgensis str. Marburg]
          Length = 340

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 42/140 (30%), Gaps = 18/140 (12%)

Query: 10  FLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69
             +L EF        + + +     +   E      RFR    +      +E CI C  C
Sbjct: 5   IWYLYEFAR------KSWAEKFANAHTEHEILEKPERFRDFPTVH-----KEYCIGCGAC 53

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA--IVEGPNFEFA 127
              CPA                      I    CI CG C E CP D   I  G N    
Sbjct: 54  TTACPAPGAIKLVRDTDTSEEEGLTYPVIVRGACIRCGFCAEVCPTDPKTIECGENHLI- 112

Query: 128 TETRQEL-YYDKERLLNNGD 146
              R+E      E+L    D
Sbjct: 113 ---REEFTIVPSEKLYVIDD 129



 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 31/75 (41%), Gaps = 5/75 (6%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR-----YDIDMIKCIYCG 107
           L         CI C  C  +CP    TIE G         T+      Y ID   CI C 
Sbjct: 77  LTYPVIVRGACIRCGFCAEVCPTDPKTIECGENHLIREEFTIVPSEKLYVIDDYLCIRCR 136

Query: 108 LCQEACPVDAIVEGP 122
            C +ACPVDAIVE  
Sbjct: 137 KCMKACPVDAIVEED 151



 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 11/60 (18%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           Y   +  CI C+ C   CP  AI  E G           R +ID  +CI CG C E CPV
Sbjct: 125 YVIDDYLCIRCRKCMKACPVDAIVEEDG-----------RVEIDQSRCIACGDCLEKCPV 173


>gi|15895497|ref|NP_348846.1| pyruvate:ferredoxin oxidoreductase [Clostridium acetobutylicum ATCC
           824]
 gi|15025228|gb|AAK80186.1|AE007723_4 Pyruvate:ferredoxin oxidoreductase [Clostridium acetobutylicum ATCC
           824]
 gi|325509644|gb|ADZ21280.1| Pyruvate:ferredoxin oxidoreductase [Clostridium acetobutylicum EA
           2018]
          Length = 1171

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 30/91 (32%), Gaps = 19/91 (20%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQA-----ITIESGPRCHDGTRRTVRY--------- 96
            A+       ++CI C  C  +CP        +T E      +G +              
Sbjct: 677 IAINVPEWNVDKCIQCNQCSFVCPHAVIRPALMTAEEAKNAPEGMQYKKAMGVKSDEELN 736

Query: 97  ---DIDMIKCIYCGLCQEACP--VDAIVEGP 122
               I  + C  CG C E CP    A+V  P
Sbjct: 737 FSIVISPLDCTGCGNCAEVCPAKEKALVMKP 767


>gi|118581920|ref|YP_903170.1| formate dehydrogenase subunit alpha [Pelobacter propionicus DSM
           2379]
 gi|118504630|gb|ABL01113.1| NAD-dependent formate dehydrogenase catalytic subunit [Pelobacter
           propionicus DSM 2379]
          Length = 904

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 3/68 (4%)

Query: 55  RYPNGEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQE 111
            Y     +C+ C+ C   C A Q            G R    +D  I    C+ CG C  
Sbjct: 142 FYSRNMNKCVKCRRCVTTCSAYQCSEAIDFAGRGFGVRVAAPFDDQIRNSSCVSCGNCVS 201

Query: 112 ACPVDAIV 119
            CPV A+ 
Sbjct: 202 VCPVGALQ 209


>gi|302391251|ref|YP_003827071.1| dihydroorotate dehydrogenase family protein [Acetohalobium
           arabaticum DSM 5501]
 gi|302203328|gb|ADL12006.1| dihydroorotate dehydrogenase family protein [Acetohalobium
           arabaticum DSM 5501]
          Length = 409

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 13/77 (16%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            E CI C +C   C   AI++              +  +D  KC +CGLC   CP +A+ 
Sbjct: 341 PEECIGCGMCLNWCFYDAISLYEEDGE-------TKAKVDPDKCDHCGLCVSLCPKEALN 393

Query: 120 EGPNFEFATETRQELYY 136
               +E     + E  Y
Sbjct: 394 M--EYE----DKDEKVY 404


>gi|222099656|ref|YP_002534224.1| Pyruvate synthase subunit porD [Thermotoga neapolitana DSM 4359]
 gi|221572046|gb|ACM22858.1| Pyruvate synthase subunit porD [Thermotoga neapolitana DSM 4359]
          Length = 99

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 34/92 (36%), Gaps = 10/92 (10%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
            + G+      G   + R    +E+CI C  C   CP QAI  E G              
Sbjct: 16  DKPGTAREYKTGTWRVMRPILHKEKCIDCMFCWLYCPDQAIVQEGGIMKGF--------- 66

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
            +   C  CGLC   CP  AI   P  EF  E
Sbjct: 67  -NYDYCKGCGLCANVCPKQAIEMRPETEFLGE 97


>gi|210620710|ref|ZP_03292196.1| hypothetical protein CLOHIR_00139 [Clostridium hiranonis DSM 13275]
 gi|210155211|gb|EEA86217.1| hypothetical protein CLOHIR_00139 [Clostridium hiranonis DSM 13275]
          Length = 501

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 7/69 (10%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIKCIYCGLC 109
              +++C +C  C+  C   AI+    P             + T +  I   KC+ CG C
Sbjct: 138 YIDQDKCKSCGACKKACQYDAISEMIRPCKSVCPTGALDINKDTSKAIIHEEKCVNCGAC 197

Query: 110 QEACPVDAI 118
             ACP  AI
Sbjct: 198 MSACPFGAI 206



 Score = 33.9 bits (76), Expect = 7.5,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 13/69 (18%)

Query: 54  RRYPNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
                  + C  C    C+  C   AI+  +G           R  ID  KC  CG C++
Sbjct: 104 INDFTVTDLCRGCLAHRCKESCKFGAISYING-----------RAYIDQDKCKSCGACKK 152

Query: 112 ACPVDAIVE 120
           AC  DAI E
Sbjct: 153 ACQYDAISE 161


>gi|297619218|ref|YP_003707323.1| Cobyrinic acid ac-diamide synthase [Methanococcus voltae A3]
 gi|297378195|gb|ADI36350.1| Cobyrinic acid ac-diamide synthase [Methanococcus voltae A3]
          Length = 318

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 10/76 (13%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           +  + ++     ++ C  CKLC   C   AI ++                ID + C  CG
Sbjct: 56  KEYYGVKCAVLNQDLCTNCKLCYEKCRFDAILLDKDENVV----------IDDLSCEGCG 105

Query: 108 LCQEACPVDAIVEGPN 123
           LC+  CPVDAI     
Sbjct: 106 LCEYICPVDAITMEDE 121


>gi|221195140|ref|ZP_03568196.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Atopobium rimae
           ATCC 49626]
 gi|221185043|gb|EEE17434.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Atopobium rimae
           ATCC 49626]
          Length = 1186

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 48/145 (33%), Gaps = 33/145 (22%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI--------------ESG 83
           FE G+ +   RG   +    +   +CI C  C  +CP  AI                   
Sbjct: 673 FELGAAAYEKRGIAVMVPRWDD-TKCIQCNQCAYVCPHAAIRPFVLTDEEVAAAPAAAVF 731

Query: 84  PRCHDGTRRTVRYDI--DMIKCIYCGLCQEACPVDAIVE---------GPNFEFATETRQ 132
                   + ++++I      C  C  C   CP DA+              F+++     
Sbjct: 732 KDAVGPKAKGLKFEIAVSQFDCTGCSNCVYICPADALTMVAAEEEQPKQEIFDYSV---- 787

Query: 133 ELYYDKERLLNN---GDRWESEIVR 154
               +K  L+ N   G +++  ++ 
Sbjct: 788 AHVAEKPELVANNVKGSQFKKPLLE 812


>gi|212702371|ref|ZP_03310499.1| hypothetical protein DESPIG_00384 [Desulfovibrio piger ATCC 29098]
 gi|212674249|gb|EEB34732.1| hypothetical protein DESPIG_00384 [Desulfovibrio piger ATCC 29098]
          Length = 289

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 28/89 (31%), Gaps = 17/89 (19%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P  K  T         +R+       CI C  C  +C  +A+    G            
Sbjct: 46  QPEVKERTPFISGHSARIRQDD-----CIRCGQCADLCRFEAVRPHDGG----------- 89

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
             +    C  CG+C + CP  AI    N 
Sbjct: 90  -FLIDDHCEGCGVCVKLCPQQAIDFPDNH 117


>gi|157374206|ref|YP_001472806.1| putative glutamate synthase (NADPH) [Shewanella sediminis HAW-EB3]
 gi|157316580|gb|ABV35678.1| putative glutamate synthase (NADPH) [Shewanella sediminis HAW-EB3]
          Length = 597

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 34/111 (30%), Gaps = 26/111 (23%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------ITIESGPRCHDGTR 91
            EK +     R  +        E+ CI C  CE +CP            ++  R      
Sbjct: 476 DEKLALDEAHRCFNCDVHTIFSEDICIECSACEDVCPVDCINFIPAHAEDTEVRDPIVVN 535

Query: 92  RTVRYDIDMIK--------------------CIYCGLCQEACPVDAIVEGP 122
           R    DI+  +                    C++CGLC E CP  A     
Sbjct: 536 RLRVSDINPEQELFVSAPLKTGHLMIKDEDVCLHCGLCAERCPTGAWDMKK 586



 Score = 39.3 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 20/54 (37%)

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
             H      V        CI C  C++ CPVD I   P     TE R  +  ++
Sbjct: 483 EAHRCFNCDVHTIFSEDICIECSACEDVCPVDCINFIPAHAEDTEVRDPIVVNR 536


>gi|147920357|ref|YP_685870.1| 2(4Fe-4S) ferredoxin-domain-containing protein [uncultured
           methanogenic archaeon RC-I]
 gi|110621266|emb|CAJ36544.1| 2(4Fe-4S) ferredoxin-domain protein [uncultured methanogenic
           archaeon RC-I]
          Length = 130

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            + +C+ C  C ++CP  AI+ E   +            ID   C+ CG C  ACP  AI
Sbjct: 75  DDNQCVHCGACVSVCPVDAISYEHDWQV----------TIDKAACVQCGTCTHACPTSAI 124

Query: 119 VEGP 122
               
Sbjct: 125 RLTD 128



 Score = 37.0 bits (84), Expect = 0.80,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 101 IKCIYCGLCQEACPVDAIVEGPNF 124
            +C++CG C   CPVDAI    ++
Sbjct: 77  NQCVHCGACVSVCPVDAISYEHDW 100


>gi|150016338|ref|YP_001308592.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing
           protein [Clostridium beijerinckii NCIMB 8052]
 gi|149902803|gb|ABR33636.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Clostridium beijerinckii NCIMB 8052]
          Length = 1172

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/115 (19%), Positives = 35/115 (30%), Gaps = 30/115 (26%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT----------------RRTV 94
            A+       ++CI C  C  ICP   +                                
Sbjct: 677 IAVNVPEWQTDKCIQCGQCAFICPHATVRQFLVDESEMKNAPEDFITKKAAGKGLENYGY 736

Query: 95  RYDIDMIKCIYCGLCQEACPVD--AIVEGP----------NFEFAT--ETRQELY 135
           R  I  + C  CG C + CP    A++  P          N+E+A     +++L 
Sbjct: 737 RIQIAPLDCTGCGNCADVCPAPGKALIMKPAEEQILEQAENWEYAMKLTPKEDLI 791


>gi|332830208|gb|EGK02836.1| hypothetical protein HMPREF9455_01086 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 428

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 17/104 (16%), Positives = 29/104 (27%), Gaps = 11/104 (10%)

Query: 17  VGAFFLCLRY------FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70
           +    +  +             T          S    G    R+       CI+C  C 
Sbjct: 306 LFGLSVTNKTVVLGGPMMGRGIT----DWNVPVSKGSSGVLFFRKERIKRSNCISCGYCV 361

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            +CP   + ++       G +        +  CI C  C+  CP
Sbjct: 362 DVCPMHLMPMKFEENFRRG-KYFNLEKYSISSCIECAACEYICP 404



 Score = 40.5 bits (93), Expect = 0.091,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 4/56 (7%)

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140
           +   G     +  I    CI CG C + CP+  +       F    R+  Y++ E+
Sbjct: 336 KGSSGVLFFRKERIKRSNCISCGYCVDVCPMHLMPMKFEENF----RRGKYFNLEK 387


>gi|312602256|ref|YP_004022101.1| ferredoxin--NADP reductase [Burkholderia rhizoxinica HKI 454]
 gi|312169570|emb|CBW76582.1| Ferredoxin--NADP reductase (EC 1.18.1.2) [Burkholderia rhizoxinica
           HKI 454]
          Length = 406

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 11/69 (15%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
              L ++    + CI C  CE  CP  AIT ++             Y ++   C  C  C
Sbjct: 1   MAMLNQHLIDPQVCIRCNTCEETCPNDAITHDAN-----------NYVVNAQVCNGCMAC 49

Query: 110 QEACPVDAI 118
              CP  AI
Sbjct: 50  VPPCPTGAI 58



 Score = 34.3 bits (77), Expect = 5.5,   Method: Composition-based stats.
 Identities = 12/23 (52%), Positives = 13/23 (56%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVE 120
           ID   CI C  C+E CP DAI  
Sbjct: 9   IDPQVCIRCNTCEETCPNDAITH 31


>gi|312135460|ref|YP_004002798.1| pyruvate/ketoisovalerate oxidoreductase subunit gamma
           [Caldicellulosiruptor owensensis OL]
 gi|311775511|gb|ADQ04998.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit
           [Caldicellulosiruptor owensensis OL]
          Length = 339

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 8/91 (8%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E+CI C LCE  CP             +G  + +   +D   C  C  C + CP  A+VE
Sbjct: 252 EKCINCGLCETTCPD--YVFVWDRIIENGKPKMINMGLDYQYCKGCLRCVDICPAGALVE 309

Query: 121 GPNFEFATET---RQEL-YYDKERLLNNGDR 147
           G   E+  E    + +   Y+K     +G++
Sbjct: 310 GIEREYDIEKISAKHDFDIYEKW--YEDGEK 338



 Score = 35.5 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 10/65 (15%)

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNN 144
           + +  +R          KCI CGLC+  CP    V     E            K +++N 
Sbjct: 236 KNNMTSRIGKIPVFVKEKCINCGLCETTCPDYVFVWDRIIEN----------GKPKMINM 285

Query: 145 GDRWE 149
           G  ++
Sbjct: 286 GLDYQ 290


>gi|301052239|ref|YP_003790450.1| formate dehydrogenase subunit alpha [Bacillus anthracis CI]
 gi|300374408|gb|ADK03312.1| formate dehydrogenase, alpha subunit, anaerobic [Bacillus cereus
           biovar anthracis str. CI]
          Length = 978

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +             R +
Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
                 I+   C+ CG C   CP +A++E
Sbjct: 183 WDHGVSINDSSCVSCGQCVTVCPCNALME 211



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|229089652|ref|ZP_04220914.1| formate dehydrogenase [Bacillus cereus Rock3-42]
 gi|228693682|gb|EEL47383.1| formate dehydrogenase [Bacillus cereus Rock3-42]
          Length = 978

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +             R +
Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
                 I+   C+ CG C   CP +A++E
Sbjct: 183 WDHGVSINDSSCVSCGQCVTVCPCNALME 211



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|225181697|ref|ZP_03735136.1| protein of unknown function DUF362 [Dethiobacter alkaliphilus AHT
           1]
 gi|225167568|gb|EEG76380.1| protein of unknown function DUF362 [Dethiobacter alkaliphilus AHT
           1]
          Length = 370

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 12/60 (20%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI+CK+C+  CPA AIT+E                I+   CI C  CQE CP  AI  
Sbjct: 313 DSCISCKICQHACPAGAITMEEAA------------QIEEGACIRCYCCQEMCPEGAIEL 360



 Score = 33.9 bits (76), Expect = 7.6,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 13/26 (50%)

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVE 120
              + +  CI C +CQ ACP  AI  
Sbjct: 307 HPKVKVDSCISCKICQHACPAGAITM 332


>gi|225571993|ref|ZP_03780857.1| hypothetical protein RUMHYD_00287 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040526|gb|EEG50772.1| hypothetical protein RUMHYD_00287 [Blautia hydrogenotrophica DSM
           10507]
          Length = 368

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 11/63 (17%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              ++ CI CK C  IC   A   +                I+  KC+ CG C   CP D
Sbjct: 191 HVNQKLCIGCKKCAQICAHDAPEFKDLKAA-----------INHDKCVGCGRCLGVCPKD 239

Query: 117 AIV 119
           AI 
Sbjct: 240 AIC 242


>gi|119476465|ref|ZP_01616816.1| electron transport complex protein RnfC [marine gamma
           proteobacterium HTCC2143]
 gi|119450329|gb|EAW31564.1| electron transport complex protein RnfC [marine gamma
           proteobacterium HTCC2143]
          Length = 684

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 2/100 (2%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C +C  +CPA  +  +       G       D +++ CI CG C  ACP   I  
Sbjct: 368 QACIRCGMCAEVCPAS-LLPQQLYWFSRGKEYEKLEDHNLMDCIECGACSYACP-SNIPL 425

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDS 160
              +  +    +E   D  +   +  R+E+   R    ++
Sbjct: 426 VQYYRASKADIREQKQDAIKAEQSKMRFEARQERLDRQEA 465


>gi|229154293|ref|ZP_04282413.1| formate dehydrogenase [Bacillus cereus ATCC 4342]
 gi|228629117|gb|EEK85824.1| formate dehydrogenase [Bacillus cereus ATCC 4342]
          Length = 978

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +             R +
Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
                 I+   C+ CG C   CP +A++E
Sbjct: 183 WDHGVSINDSSCVSCGQCVTVCPCNALME 211



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|217077037|ref|YP_002334753.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermosipho africanus TCF52B]
 gi|217036890|gb|ACJ75412.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermosipho africanus TCF52B]
          Length = 642

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 26/78 (33%), Gaps = 9/78 (11%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           + +  L  Y    ++C  CK C       AI  ++            +  ID   C  CG
Sbjct: 574 KNKEKLPLYKVNTDKCTGCKTCIVTFGCPAIFWDAE---------NKKAKIDPTMCWGCG 624

Query: 108 LCQEACPVDAIVEGPNFE 125
            C + CP  A       E
Sbjct: 625 SCAQVCPFGAFELVKEAE 642


>gi|212705024|ref|ZP_03313152.1| hypothetical protein DESPIG_03092 [Desulfovibrio piger ATCC 29098]
 gi|212671576|gb|EEB32059.1| hypothetical protein DESPIG_03092 [Desulfovibrio piger ATCC 29098]
          Length = 480

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 6/71 (8%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY------DIDMIKCIYCGLCQEA 112
             E+C  C +C   CP  AI   + P       R +        +ID  KC  CG C  A
Sbjct: 149 DPEKCRNCGMCMDACPYHAIVRLNVPCEAACPVRAIHKGNKGRAEIDFEKCTSCGRCMRA 208

Query: 113 CPVDAIVEGPN 123
           CP  A++E   
Sbjct: 209 CPFGAVMERSE 219



 Score = 39.3 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 22/76 (28%), Gaps = 5/76 (6%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-----DIDMIK 102
           R E         +  C  C               +           + +      ID  K
Sbjct: 93  RKEPNWPILTVCDIACQGCMRARYYVTDACQGCVARSCIGSCRFGAISFSRGRSTIDPEK 152

Query: 103 CIYCGLCQEACPVDAI 118
           C  CG+C +ACP  AI
Sbjct: 153 CRNCGMCMDACPYHAI 168


>gi|153952568|ref|YP_001398777.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Campylobacter jejuni
           subsp. doylei 269.97]
 gi|152940014|gb|ABS44755.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Campylobacter jejuni
           subsp. doylei 269.97]
          Length = 1186

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/124 (16%), Positives = 36/124 (29%), Gaps = 24/124 (19%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA------------------QAIT 79
           FE G+T    RG   +         CI C  C ++CP                       
Sbjct: 668 FEHGTTEYEKRGVGVMVPRWIE-ANCIQCNQCASVCPHAVIRPFLINDEEMVNAPRGVKD 726

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-----AIVEGPNFEFATETRQEL 134
                +   G + + +  +  + C  C LC   CP        +      +F  +   + 
Sbjct: 727 HALEAKGTKGEKLSFKIQVSPLDCTGCELCVHECPTKEKSLVMVPLQEEMDFGEQENADY 786

Query: 135 YYDK 138
            + K
Sbjct: 787 LFKK 790


>gi|49480180|ref|YP_034847.1| formate dehydrogenase subunit alpha, anaerobic [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|49331736|gb|AAT62382.1| formate dehydrogenase, alpha subunit, anaerobic [Bacillus
           thuringiensis serovar konkukian str. 97-27]
          Length = 978

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +             R +
Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
                 I+   C+ CG C   CP +A++E
Sbjct: 183 WDHGVSINDSSCVSCGQCVTVCPCNALME 211



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|18313957|ref|NP_560624.1| 2-ketoacid ferredoxin oxidoreductase delta subunit [Pyrobaculum
           aerophilum str. IM2]
 gi|18161530|gb|AAL64806.1| 2-ketoacid ferredoxin oxidoreductase delta subunit [Pyrobaculum
           aerophilum str. IM2]
          Length = 83

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 29/84 (34%), Gaps = 10/84 (11%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
               S    G     +      +CI C LC   CP   I  E G           +  ID
Sbjct: 7   PAPASAGITGTWRTYKPVVNLSKCIDCGLCWLYCPESVIDWEKG----------TKVRID 56

Query: 100 MIKCIYCGLCQEACPVDAIVEGPN 123
              C  CG+C + CPV AI   P 
Sbjct: 57  YDFCKGCGICADVCPVKAIDMVPE 80


>gi|119356407|ref|YP_911051.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing
           protein [Chlorobium phaeobacteroides DSM 266]
 gi|119353756|gb|ABL64627.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Chlorobium phaeobacteroides DSM 266]
          Length = 1186

 Score = 50.1 bits (118), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 26/98 (26%), Gaps = 24/98 (24%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA--------------- 77
           T    FEK + +    G           + CI C  C  +CP  A               
Sbjct: 672 TGTSKFEKRNLADNIPGW--------EPDLCIQCGKCCMVCPHAAIRAKVYDPKYLKNAP 723

Query: 78  -ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                +  +  +         I    C  C +C   CP
Sbjct: 724 NTFKNTDAKAANWEGMKYTIQIAPEDCTGCEMCAHVCP 761



 Score = 34.7 bits (78), Expect = 4.6,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 9/19 (47%)

Query: 100 MIKCIYCGLCQEACPVDAI 118
              CI CG C   CP  AI
Sbjct: 691 PDLCIQCGKCCMVCPHAAI 709


>gi|307318107|ref|ZP_07597543.1| NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding
           [Sinorhizobium meliloti AK83]
 gi|306896148|gb|EFN26898.1| NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding
           [Sinorhizobium meliloti AK83]
          Length = 853

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 3/80 (3%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           +   S   R    +    N   RCI C+ C  +C      +  G            ++  
Sbjct: 128 RVFHSKDIRLSPVIIMNVN---RCIQCQRCVRMCEEVVGAVALGTVEKGMDTAVTGFEGS 184

Query: 100 MIKCIYCGLCQEACPVDAIV 119
           +  C  CG C E CPV A++
Sbjct: 185 LASCDQCGNCVEVCPVGALM 204


>gi|304412801|ref|ZP_07394403.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS183]
 gi|307307465|ref|ZP_07587200.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica BA175]
 gi|304348881|gb|EFM13297.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS183]
 gi|306910253|gb|EFN40686.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica BA175]
          Length = 553

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 30/82 (36%), Gaps = 9/82 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E+C  C  C AICP  A+                        C+ CGLC+ ACP   I
Sbjct: 419 NVEKCTMCMSCVAICPTVALQDGGDKPALH---------FIEQNCVQCGLCEAACPEKVI 469

Query: 119 VEGPNFEFATETRQELYYDKER 140
              P   F    RQ+ +  KE 
Sbjct: 470 SLTPQINFDKAARQQQHTLKEE 491



 Score = 38.9 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 11/53 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C   CPA AI+  +              +ID   C   G C  ACP  AI
Sbjct: 195 CNRCLNFCPADAISSVAKK-----------IEIDPYLCHGAGSCTSACPTGAI 236


>gi|297190829|ref|ZP_06908227.1| NADH-quinone oxidoreductase subunit G 2 [Streptomyces
           pristinaespiralis ATCC 25486]
 gi|297150632|gb|EFH30699.1| NADH-quinone oxidoreductase subunit G 2 [Streptomyces
           pristinaespiralis ATCC 25486]
          Length = 285

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 4/75 (5%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM----IKCIYCGLCQE 111
           Y    ++CI C  C   C  Q     +      G    +  + D       C+YCG C E
Sbjct: 145 YVRDYDKCILCYKCVDACGDQWQNTFAIAVAGRGFDARISTEHDAPLTDSACVYCGNCIE 204

Query: 112 ACPVDAIVEGPNFEF 126
            CP  A+     F+ 
Sbjct: 205 VCPTGALSFKSEFDM 219


>gi|282857806|ref|ZP_06267014.1| iron hydrogenase 1 ([Fe] hydrogenase) (Fe-only hydrogenase) (CpI)
           [Pyramidobacter piscolens W5455]
 gi|282584367|gb|EFB89727.1| iron hydrogenase 1 ([Fe] hydrogenase) (Fe-only hydrogenase) (CpI)
           [Pyramidobacter piscolens W5455]
          Length = 577

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 30/89 (33%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
           + PFEK   S R   +  L R  +   +C+ C           +                
Sbjct: 120 DTPFEKHYVSRRTSPDFPLIRDFSLCIKCMRCVQVCDKIQHANVWDVVNTGAKTTVDVAR 179

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
            Y ++   C  CG C   CPV A+ E  +
Sbjct: 180 VYRLEDADCALCGQCITHCPVGALHERDD 208


>gi|228983790|ref|ZP_04143987.1| formate dehydrogenase [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228775985|gb|EEM24354.1| formate dehydrogenase [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
          Length = 978

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +             R +
Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
                 I+   C+ CG C   CP +A++E
Sbjct: 183 WDHGVSINDSSCVSCGQCVTVCPCNALME 211



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|225862561|ref|YP_002747939.1| molybdopterin oxidoreductase family protein [Bacillus cereus
           03BB102]
 gi|229182920|ref|ZP_04310153.1| formate dehydrogenase [Bacillus cereus BGSC 6E1]
 gi|225788100|gb|ACO28317.1| molybdopterin oxidoreductase family protein [Bacillus cereus
           03BB102]
 gi|228600544|gb|EEK58131.1| formate dehydrogenase [Bacillus cereus BGSC 6E1]
          Length = 978

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +             R +
Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
                 I+   C+ CG C   CP +A++E
Sbjct: 183 WDHGVSINDSSCVSCGQCVTVCPCNALME 211



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|217958175|ref|YP_002336719.1| molybdopterin oxidoreductase family protein [Bacillus cereus AH187]
 gi|217066922|gb|ACJ81172.1| molybdopterin oxidoreductase family protein [Bacillus cereus AH187]
          Length = 978

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +             R +
Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
                 I+   C+ CG C   CP +A++E
Sbjct: 183 WDHGVSINDSSCVSCGQCVTVCPCNALME 211



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|254361778|ref|ZP_04977913.1| NADH dehydrogenase (ubiquinone) [Mannheimia haemolytica PHL213]
 gi|153093313|gb|EDN74309.1| NADH dehydrogenase (ubiquinone) [Mannheimia haemolytica PHL213]
          Length = 205

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 25/81 (30%), Gaps = 10/81 (12%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                  E  ++     E+ CI C  C   CP  AI   +             + I    
Sbjct: 96  PPMEGMAEPEMKVAFVIEDLCIGCTKCIQACPVDAIIGTNK----------AMHTIIPDL 145

Query: 103 CIYCGLCQEACPVDAIVEGPN 123
           C  C LC   CP + I   P 
Sbjct: 146 CTGCELCVAPCPTNCIEMRPI 166


>gi|118578917|ref|YP_900167.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pelobacter propionicus DSM 2379]
 gi|118501627|gb|ABK98109.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pelobacter
           propionicus DSM 2379]
          Length = 435

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 12/106 (11%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            E+C  C LC   CP  AI + +        ++     ID   C+ CG+C   CP  A  
Sbjct: 289 REKCSGCGLCAQACPINAIAMVAADTRSPKRKQDAV--IDTAICLGCGVCALKCPSGACR 346

Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRW--ESEIVRNIVTDSPYR 163
                     +R++     E           E   ++N++ D+P R
Sbjct: 347 LT--------SREQRVITPESTFERVMLHSLEKGTLQNLLFDNPAR 384



 Score = 38.5 bits (88), Expect = 0.30,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
           I   KC  CGLC +ACP++AI        + + +Q+   D
Sbjct: 287 ITREKCSGCGLCAQACPINAIAMVAADTRSPKRKQDAVID 326


>gi|47567169|ref|ZP_00237885.1| NAD-dependent formate dehydrogenase, alpha subunit [Bacillus cereus
           G9241]
 gi|47556225|gb|EAL14560.1| NAD-dependent formate dehydrogenase, alpha subunit [Bacillus cereus
           G9241]
          Length = 978

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +             R +
Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
                 I+   C+ CG C   CP +A++E
Sbjct: 183 WDHGVSINDSSCVSCGQCVTVCPCNALME 211



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|328953055|ref|YP_004370389.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
 gi|328453379|gb|AEB09208.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
          Length = 617

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 34/96 (35%), Gaps = 15/96 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            L+Y F+ + T +   +K            L  Y      C +C  C   CP  AI+   
Sbjct: 534 TLKY-FREEYTKHIVDKKCPALVC----RQLLTYTIDPNECTSCLACVRECPVGAISGPK 588

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                          I+   CI CGLC + C  DA+
Sbjct: 589 KEPQV----------INQDLCIKCGLCHDVCQFDAV 614


>gi|260893719|ref|YP_003239816.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ammonifex
            degensii KC4]
 gi|260865860|gb|ACX52966.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ammonifex
            degensii KC4]
          Length = 1016

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 9/63 (14%)

Query: 59   GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               +C  C++C  +CP  AI+ +                I+   C  CG+C  ACP  AI
Sbjct: 947  DPAKCSGCRICVNLCPYNAISFDD---------VNKVSVINEAVCKGCGVCAAACPSKAI 997

Query: 119  VEG 121
              G
Sbjct: 998  TMG 1000



 Score = 35.5 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 27/88 (30%), Gaps = 22/88 (25%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCH-------DGTRRTVRYDIDMIKCIY---- 105
               E+C+AC  C A CP +     +                    Y ID  KC+     
Sbjct: 102 YVDPEKCVACGDCAAKCPVKVKDEFNEGLGERKAIFIKYSQAVPAAYMIDATKCLRILHA 161

Query: 106 -----------CGLCQEACPVDAIVEGP 122
                      CGLC +AC   AI    
Sbjct: 162 EKAKAAGKEPPCGLCAKACQRGAINFDD 189


>gi|228913279|ref|ZP_04076913.1| formate dehydrogenase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228846330|gb|EEM91348.1| formate dehydrogenase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
          Length = 978

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +             R +
Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
                 I+   C+ CG C   CP +A++E
Sbjct: 183 WDHGVSINDSSCVSCGQCVTVCPCNALME 211



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|228944343|ref|ZP_04106716.1| formate dehydrogenase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
 gi|228815245|gb|EEM61493.1| formate dehydrogenase [Bacillus thuringiensis serovar monterrey
           BGSC 4AJ1]
          Length = 978

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +             R +
Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
                 I+   C+ CG C   CP +A++E
Sbjct: 183 WDHGVSINDSSCVSCGQCVTVCPCNALME 211



 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|296127647|ref|YP_003634899.1| Ferredoxin hydrogenase [Brachyspira murdochii DSM 12563]
 gi|296019463|gb|ADG72700.1| Ferredoxin hydrogenase [Brachyspira murdochii DSM 12563]
          Length = 490

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 6/69 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGT------RRTVRYDIDMIKCIYCGLCQ 110
                +CI C LC   CP  AI     P                +  ID  KCI+CG C 
Sbjct: 144 HIDSSKCINCGLCLKNCPYHAIIYIPVPCEESCPVGAINKNEQGKEVIDYHKCIFCGNCM 203

Query: 111 EACPVDAIV 119
             CP  A++
Sbjct: 204 RECPFSAMM 212



 Score = 40.1 bits (92), Expect = 0.099,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 29/81 (35%), Gaps = 6/81 (7%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMI 101
           R +         +E C AC     +         + P   +  +         R  ID  
Sbjct: 89  REKPTWPMLTVLDEACNACVRANFMVTNACQACLARPCLVNCPKDAITILDEKRAHIDSS 148

Query: 102 KCIYCGLCQEACPVDAIVEGP 122
           KCI CGLC + CP  AI+  P
Sbjct: 149 KCINCGLCLKNCPYHAIIYIP 169


>gi|118476276|ref|YP_893427.1| formate dehydrogenase, subunit alpha [Bacillus thuringiensis str.
           Al Hakam]
 gi|118415501|gb|ABK83920.1| formate dehydrogenase, alpha subunit [Bacillus thuringiensis str.
           Al Hakam]
          Length = 986

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +             R +
Sbjct: 133 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 190

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
                 I+   C+ CG C   CP +A++E
Sbjct: 191 WDHGVSINDSSCVSCGQCVTVCPCNALME 219



 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 99  RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 158

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 159 CIACGQCVEVC 169


>gi|30260746|ref|NP_843123.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. Ames]
 gi|47525864|ref|YP_017213.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|49183583|ref|YP_026835.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. Sterne]
 gi|165871793|ref|ZP_02216437.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. A0488]
 gi|167635652|ref|ZP_02393963.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. A0442]
 gi|167640648|ref|ZP_02398909.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. A0193]
 gi|170688486|ref|ZP_02879693.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. A0465]
 gi|170708211|ref|ZP_02898657.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. A0389]
 gi|177653752|ref|ZP_02935853.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. A0174]
 gi|190568151|ref|ZP_03021060.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|218901784|ref|YP_002449618.1| molybdopterin oxidoreductase family protein [Bacillus cereus AH820]
 gi|227816540|ref|YP_002816549.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. CDC 684]
 gi|228925778|ref|ZP_04088862.1| formate dehydrogenase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229120240|ref|ZP_04249491.1| formate dehydrogenase [Bacillus cereus 95/8201]
 gi|229601455|ref|YP_002865191.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. A0248]
 gi|254684332|ref|ZP_05148192.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. CNEVA-9066]
 gi|254722134|ref|ZP_05183923.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. A1055]
 gi|254738796|ref|ZP_05196499.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. Western North America USA6153]
 gi|254743818|ref|ZP_05201502.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. Kruger B]
 gi|254755020|ref|ZP_05207054.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. Vollum]
 gi|254762246|ref|ZP_05214090.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. Australia 94]
 gi|30254195|gb|AAP24609.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. Ames]
 gi|47501012|gb|AAT29688.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|49177510|gb|AAT52886.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. Sterne]
 gi|164712518|gb|EDR18051.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. A0488]
 gi|167511363|gb|EDR86748.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. A0193]
 gi|167528911|gb|EDR91667.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. A0442]
 gi|170126867|gb|EDS95748.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. A0389]
 gi|170667511|gb|EDT18267.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. A0465]
 gi|172081144|gb|EDT66220.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. A0174]
 gi|190560643|gb|EDV14619.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           Tsiankovskii-I]
 gi|218539273|gb|ACK91671.1| molybdopterin oxidoreductase family protein [Bacillus cereus AH820]
 gi|227004272|gb|ACP14015.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. CDC 684]
 gi|228663281|gb|EEL18870.1| formate dehydrogenase [Bacillus cereus 95/8201]
 gi|228833793|gb|EEM79346.1| formate dehydrogenase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|229265863|gb|ACQ47500.1| molybdopterin oxidoreductase family protein [Bacillus anthracis
           str. A0248]
          Length = 978

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +             R +
Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
                 I+   C+ CG C   CP +A++E
Sbjct: 183 WDHGVSINDSSCVSCGQCVTVCPCNALME 211



 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|15678427|ref|NP_275542.1| polyferredoxin [Methanothermobacter thermautotrophicus str. Delta
           H]
 gi|2621461|gb|AAB84905.1| polyferredoxin [Methanothermobacter thermautotrophicus str. Delta
           H]
          Length = 341

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/140 (23%), Positives = 42/140 (30%), Gaps = 18/140 (12%)

Query: 10  FLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69
             +L EF        + + +     +   E      RFR    ++      E CI C  C
Sbjct: 5   IWYLYEFAR------KSWAEKFANAHTEHEILEKPERFRDFPTVK-----REYCIGCGAC 53

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA--IVEGPNFEFA 127
              CPA                      I    CI CG C E CP D   I  G N    
Sbjct: 54  TTACPAPGAIKLVRDTDTAEEEGQTYPVIVRGACIRCGFCAEVCPTDPKTIECGENHLI- 112

Query: 128 TETRQEL-YYDKERLLNNGD 146
              R+E      E+L    D
Sbjct: 113 ---REEFTIVPSEKLYVIDD 129



 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 29/65 (44%), Gaps = 5/65 (7%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVR-----YDIDMIKCIYCGLCQEACPVDA 117
           CI C  C  +CP    TIE G         T+      Y ID   CI C  C +ACPVDA
Sbjct: 87  CIRCGFCAEVCPTDPKTIECGENHLIREEFTIVPSEKLYVIDDYLCIRCKKCMKACPVDA 146

Query: 118 IVEGP 122
           I E  
Sbjct: 147 ITEKD 151



 Score = 42.4 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 14/109 (12%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           Y   +  CI CK C   CP  AIT + G           R ++D  +CI CG C E CPV
Sbjct: 125 YVIDDYLCIRCKKCMKACPVDAITEKDG-----------RVEVDQGRCIACGECLEKCPV 173

Query: 116 DAIVEGPNFEFATETRQELYYDKE-RLLNNGDRWESEIVRNIVTDSPYR 163
              ++  +  +  E +  +  +     L +    +SE ++ +  +  YR
Sbjct: 174 KGALKVIHVAYVEEQK--MVINLAVNELESAIEEKSEDIKKLEAEGVYR 220


>gi|288574748|ref|ZP_06393105.1| ferredoxin [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288570489|gb|EFC92046.1| ferredoxin [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 671

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 30/93 (32%), Gaps = 8/93 (8%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC--PAQAITIESGPRCHDGTR 91
           + YPF        F  + +         RCI C  C  +C     A T++   R  +   
Sbjct: 123 VRYPF----LYAPFHNDTSKETIQMDHNRCILCLRCIRVCAEKVGAHTLDLEKRGWNTNV 178

Query: 92  RTV--RYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                        C+ CG C + CP  AI    
Sbjct: 179 VADLGHLLGQSESCVDCGACAQVCPTGAITIRD 211


>gi|196046780|ref|ZP_03114002.1| molybdopterin oxidoreductase family protein [Bacillus cereus
           03BB108]
 gi|196022315|gb|EDX61000.1| molybdopterin oxidoreductase family protein [Bacillus cereus
           03BB108]
          Length = 978

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +             R +
Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
                 I+   C+ CG C   CP +A++E
Sbjct: 183 WDHGVSINDSSCVSCGQCVTVCPCNALME 211



 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|160877323|ref|YP_001556639.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS195]
 gi|160862845|gb|ABX51379.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS195]
 gi|315269528|gb|ADT96381.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS678]
          Length = 553

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 30/82 (36%), Gaps = 9/82 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E+C  C  C AICP  A+                        C+ CGLC+ ACP   I
Sbjct: 419 NVEKCTMCMSCVAICPTVALQDGGDKPALH---------FIEQNCVQCGLCEAACPEKVI 469

Query: 119 VEGPNFEFATETRQELYYDKER 140
              P   F    RQ+ +  KE 
Sbjct: 470 SLTPQINFDKAARQQQHTLKEE 491



 Score = 38.9 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 11/53 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C   CPA AI+  +              +ID   C   G C  ACP  AI
Sbjct: 195 CNRCLNFCPADAISSVAKK-----------IEIDPYLCHGAGSCTSACPTGAI 236


>gi|78043073|ref|YP_361194.1| iron-sulfur cluster-binding protein [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995188|gb|ABB14087.1| iron-sulfur cluster-binding protein [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 372

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/115 (23%), Positives = 39/115 (33%), Gaps = 13/115 (11%)

Query: 18  GAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA 77
               L     F     I     +         ++     P   ERC+ C  C   CP +A
Sbjct: 270 SGKGLTFN--FAPPNNIESLDGRIPAFLVRFFQNQFTARPVMNERCVGCGRCARHCPPKA 327

Query: 78  ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           + IE+               +D  KCI C  CQE CP +A+     F     +R+
Sbjct: 328 VKIENRRAI-----------VDYNKCIRCYCCQELCPANAVELKEGFLMRLFSRK 371


>gi|52144723|ref|YP_082108.1| formate dehydrogenase, alpha subunit, anaerobic [Bacillus cereus
           E33L]
 gi|51978192|gb|AAU19742.1| formate dehydrogenase, alpha subunit, anaerobic [Bacillus cereus
           E33L]
          Length = 978

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +             R +
Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
                 I+   C+ CG C   CP +A++E
Sbjct: 183 WDHGVSINDSSCVSCGQCVTVCPCNALME 211



 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|311279508|ref|YP_003941739.1| electron transport complex, RnfABCDGE type, C subunit [Enterobacter
           cloacae SCF1]
 gi|308748703|gb|ADO48455.1| electron transport complex, RnfABCDGE type, C subunit [Enterobacter
           cloacae SCF1]
          Length = 679

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQDEKGCIRCSACADACPAD-LLPQQLYWFSKGQQHDKAQTHNLSDCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQELYY--DKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEQRAAEAKARFEARQARLEREKAARLER 477


>gi|300245945|gb|ADJ94030.1| putative respiratory-chain NADH dehydrogenase domain [Clostridia
           bacterium enrichment culture clone BF]
          Length = 603

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/66 (39%), Positives = 29/66 (43%), Gaps = 10/66 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L RY   EE+C  C  C   CP  AI  E              + +D  KCI CGLC  A
Sbjct: 542 LIRYEVTEEKCKGCGRCNKQCPTGAIAGEKKQP----------FALDQGKCIRCGLCINA 591

Query: 113 CPVDAI 118
           C  DAI
Sbjct: 592 CKFDAI 597


>gi|302555319|ref|ZP_07307661.1| respiratory chain oxidoreductase [Streptomyces viridochromogenes
           DSM 40736]
 gi|302472937|gb|EFL36030.1| respiratory chain oxidoreductase [Streptomyces viridochromogenes
           DSM 40736]
          Length = 286

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 4/75 (5%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID----MIKCIYCGLCQE 111
           Y    ++CI C  C   C  Q     +      G    +  + D       C+YCG C E
Sbjct: 145 YIRDYDKCILCYKCVDACGDQWQNSFAISVAGRGFDARISVEHDGPLTDSACVYCGNCIE 204

Query: 112 ACPVDAIVEGPNFEF 126
            CP  A+     F+ 
Sbjct: 205 VCPTGALSFKSEFDM 219


>gi|225181056|ref|ZP_03734503.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168253|gb|EEG77057.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dethiobacter
           alkaliphilus AHT 1]
          Length = 416

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 22/97 (22%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C  C  C   CP  AI +              +  ID   C+ CG+C   CP  A+V   
Sbjct: 290 CTGCGKCVQACPVDAIGVTDKEE--------KKAQIDTEYCLGCGVCTVQCPTKALVLKK 341

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
                          K+++L+  + +E  +++++  D
Sbjct: 342 R--------------KQKVLHPENTFERVLLQSLERD 364


>gi|213029517|ref|ZP_03343964.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 216

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 29/94 (30%), Gaps = 8/94 (8%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
               +  P +    S    G   + +     +RCI C  C   C   A+   +       
Sbjct: 26  KTVIVGCPNDCAKASMADLGIIGVAKMRFTADRCIGCGACVKACSHHAVGCLALKNGKAV 85

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                    +   CI CG C  ACP  A    P+
Sbjct: 86  K--------EESACIGCGECVLACPTLAWQRKPD 111


>gi|120405062|ref|YP_954891.1| putative glutamate synthase (NADPH) small subunit [Mycobacterium
           vanbaalenii PYR-1]
 gi|119957880|gb|ABM14885.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Mycobacterium vanbaalenii PYR-1]
          Length = 543

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 58  NGEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               RC++C  C        A   ++  +   G R    YD    KC  C +C + CPV 
Sbjct: 479 YESGRCLSCGNCFECDGCLGACPEDAVIKLGVGQRYRFDYD----KCTGCAVCADQCPVH 534

Query: 117 AIVE 120
           AI  
Sbjct: 535 AIEM 538


>gi|299143765|ref|ZP_07036845.1| iron-sulfur cluster-binding protein [Peptoniphilus sp. oral taxon
           386 str. F0131]
 gi|298518250|gb|EFI41989.1| iron-sulfur cluster-binding protein [Peptoniphilus sp. oral taxon
           386 str. F0131]
          Length = 316

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/127 (25%), Positives = 43/127 (33%), Gaps = 15/127 (11%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P++  +       +       N    CIACKLCE  CP  AI +               
Sbjct: 190 IPYKAKTVVDCHSNDVGKDVRVNCSVGCIACKLCEKNCPKDAIHVVDNLA---------- 239

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVE---GPNFEFATETRQELYYDKERLLNNGDRWESEI 152
             ID  KCI CG+C   CP  AI         +     R E    K+ LL    R + E 
Sbjct: 240 -RIDYTKCINCGICVSKCPTGAIFCEYPERVEKMKERQRLEAEKKKQELLE-AKRAQQEA 297

Query: 153 VRNIVTD 159
                 +
Sbjct: 298 AEKANAE 304


>gi|229028382|ref|ZP_04184506.1| formate dehydrogenase [Bacillus cereus AH1271]
 gi|228732930|gb|EEL83788.1| formate dehydrogenase [Bacillus cereus AH1271]
          Length = 978

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +        +    R +
Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWNLDRPRVI 182

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
                 I+   C+ CG C   CP +A++E
Sbjct: 183 WDHGVSINDSSCVSCGQCVTVCPCNALME 211



 Score = 39.3 bits (90), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+       + +E     ++              Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKVHNTVHMMGVEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|229194900|ref|ZP_04321683.1| formate dehydrogenase [Bacillus cereus m1293]
 gi|228588604|gb|EEK46639.1| formate dehydrogenase [Bacillus cereus m1293]
          Length = 978

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +             R +
Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
                 I+   C+ CG C   CP +A++E
Sbjct: 183 WDHGVSINDSSCVSCGQCVTVCPCNALME 211



 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|261368062|ref|ZP_05980945.1| iron-sulfur cluster-binding protein [Subdoligranulum variabile DSM
           15176]
 gi|282570052|gb|EFB75587.1| iron-sulfur cluster-binding protein [Subdoligranulum variabile DSM
           15176]
          Length = 368

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 11/59 (18%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           +E C+ C  C  IC   A  I                 ID  KC+ CG C   CP DA+
Sbjct: 194 QELCVGCGRCVKICAHDAPHIVDRKSS-----------IDQNKCVGCGRCIGVCPTDAV 241


>gi|225572493|ref|ZP_03781357.1| hypothetical protein RUMHYD_00790 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040033|gb|EEG50279.1| hypothetical protein RUMHYD_00790 [Blautia hydrogenotrophica DSM
           10507]
          Length = 1180

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/102 (21%), Positives = 31/102 (30%), Gaps = 19/102 (18%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQ-----AITIESGPRCHDGTR---------RT 93
           RG        N  + CI C  C  +CP       A+T E      +G +           
Sbjct: 679 RGIAVDIPIWN-PDNCIQCNRCAYVCPHAVIRPVALTEEEAANAPEGMKTLKMTGMADYK 737

Query: 94  VRYDIDMIKCIYCGLCQEACP----VDAIVEGPNFEFATETR 131
               +    C  CG C   CP    V A+        A + +
Sbjct: 738 FAMVVSAYDCTGCGSCANVCPGKKGVKALAMENMEANAGQQK 779


>gi|224477286|ref|YP_002634892.1| putative formate dehydrogenase [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222421893|emb|CAL28707.1| putative formate dehydrogenase [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 986

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 30/95 (31%), Gaps = 7/95 (7%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
             K     +  G      Y     +CI C  C  +C    +             R +  +
Sbjct: 126 EYKPKPYEKDFGPF----YRYDPNQCILCGRCVEVCQDVQVNETLSIDWEREQPRVIWDN 181

Query: 98  ---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
              I+   C+ CG C   CP +A++E      A  
Sbjct: 182 DVSINESSCVNCGQCATVCPCNAMMENKMVGNAGY 216


>gi|217968097|ref|YP_002353603.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dictyoglomus
           turgidum DSM 6724]
 gi|217337196|gb|ACK42989.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dictyoglomus
           turgidum DSM 6724]
          Length = 369

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 20/65 (30%), Gaps = 10/65 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI C+ C   CP  A+ +                      CI CG C   CP  AI
Sbjct: 191 NPNLCIGCRRCVDHCPTGALEMVDKKSKLT----------RPELCIGCGECAVVCPTSAI 240

Query: 119 VEGPN 123
               N
Sbjct: 241 KILWN 245


>gi|206560783|ref|YP_002231548.1| ferredoxin [Burkholderia cenocepacia J2315]
 gi|198036825|emb|CAR52725.1| putative electron transport-related protein [Burkholderia
           cenocepacia J2315]
          Length = 303

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 26/81 (32%), Gaps = 10/81 (12%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
             +P    EH        E  CI C LC   CP  AI                 + I   
Sbjct: 66  PLNPVNGTEHPRAIAFIDENLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVAS 115

Query: 102 KCIYCGLCQEACPVDAIVEGP 122
            C  C LC   CPVD I   P
Sbjct: 116 LCTGCDLCVPPCPVDCIAMLP 136


>gi|196035704|ref|ZP_03103107.1| molybdopterin oxidoreductase family protein [Bacillus cereus W]
 gi|195991671|gb|EDX55636.1| molybdopterin oxidoreductase family protein [Bacillus cereus W]
          Length = 978

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +             R +
Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
                 I+   C+ CG C   CP +A++E
Sbjct: 183 WDHGVSINDSSCVSCGQCVTVCPCNALME 211



 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|160935016|ref|ZP_02082402.1| hypothetical protein CLOLEP_03892 [Clostridium leptum DSM 753]
 gi|156866469|gb|EDO59841.1| hypothetical protein CLOLEP_03892 [Clostridium leptum DSM 753]
          Length = 571

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 37/96 (38%), Gaps = 15/96 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            LRY F+ +   +    +           AL  Y    ++C  C  C  +CP  AI+   
Sbjct: 488 TLRY-FRDEYEAHVKEHRCPAGVC----KALLHYEIVADKCRGCTACARVCPVGAISGT- 541

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                        + ID+ KCI CG C E C  DAI
Sbjct: 542 ---------VKQPHTIDVNKCIKCGACIEKCKFDAI 568



 Score = 40.5 bits (93), Expect = 0.090,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 16/43 (37%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            ++         +  + Y+I   KC  C  C   CPV AI   
Sbjct: 499 HVKEHRCPAGVCKALLHYEIVADKCRGCTACARVCPVGAISGT 541


>gi|83644719|ref|YP_433154.1| electron transport complex protein RnfB [Hahella chejuensis KCTC
           2396]
 gi|123767479|sp|Q2SKU5|RNFB_HAHCH RecName: Full=Electron transport complex protein rnfB
 gi|83632762|gb|ABC28729.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Hahella
           chejuensis KCTC 2396]
          Length = 197

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 28/84 (33%), Gaps = 10/84 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E              +     E+ CI C  C   CP  AI   +             + +
Sbjct: 91  EAVPLDSEHGESKGKQVAYIREDECIGCTKCIQACPVDAILGAAKQ----------MHTV 140

Query: 99  DMIKCIYCGLCQEACPVDAIVEGP 122
            + +C  C LC E CPVD I   P
Sbjct: 141 IVSECTGCDLCVEPCPVDCIDMIP 164


>gi|28211392|ref|NP_782336.1| pyruvate-flavodoxin oxidoreductase [Clostridium tetani E88]
 gi|28203833|gb|AAO36273.1| pyruvate-flavodoxin oxidoreductase [Clostridium tetani E88]
          Length = 1215

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 52/133 (39%), Gaps = 31/133 (23%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTR----------RTVR 95
            A+      ++ CI C  C  +CP   I     T E      +G R          +  +
Sbjct: 721 IAVNVPEWQQDNCIQCNQCSFVCPHSVIRPFLLTEEEAKNAPEGYRIVEAKGGPAFKDFK 780

Query: 96  YDID--MIKCIYCGLCQEACPVD--AIVEGP---------NFEFATE-TRQELYYDKERL 141
           Y +    + C  CG C E CP    A++  P         NF ++T+ +++E   +K  +
Sbjct: 781 YTMSVSPLDCTGCGNCAEVCPAPSKALIMKPAGTQLKEQENFAYSTKLSKKENPMNK--M 838

Query: 142 LNNGDRWESEIVR 154
              G ++E  ++ 
Sbjct: 839 TIKGSQFEQPLLE 851


>gi|148263632|ref|YP_001230338.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Geobacter uraniireducens Rf4]
 gi|146397132|gb|ABQ25765.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Geobacter
           uraniireducens Rf4]
          Length = 431

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 10/78 (12%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           +RC  C  C A CP     + +     +  R+  R  ID   C+ CG+C  +CPV AI  
Sbjct: 290 DRCNGCGRCVAACPVAVAELITANDPLNPARKKAR--IDRENCLGCGVCVRSCPVAAIRL 347

Query: 121 GPNFEFATETRQELYYDK 138
                   E+R +     
Sbjct: 348 --------ESRPQRVITP 357



 Score = 33.9 bits (76), Expect = 8.0,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 16/39 (41%)

Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139
            +C  CG C  ACPV         +     R++   D+E
Sbjct: 290 DRCNGCGRCVAACPVAVAELITANDPLNPARKKARIDRE 328


>gi|324324630|gb|ADY19890.1| molybdopterin oxidoreductase family protein [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 978

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +             R +
Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
                 I+   C+ CG C   CP +A++E
Sbjct: 183 WDHGVSINDSSCVSCGQCVTVCPCNALME 211



 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|322437602|ref|YP_004219692.1| formate dehydrogenase, alpha subunit [Acidobacterium sp. MP5ACTX9]
 gi|321165495|gb|ADW71198.1| formate dehydrogenase, alpha subunit [Acidobacterium sp. MP5ACTX9]
          Length = 1005

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 3/85 (3%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR--- 95
           E       +  + +   Y     +CI C  C   C    +             R +    
Sbjct: 140 EHPFKPKPYDVDMSNPFYRYDPSQCILCGRCVQACQTVQVNETLTIGWELDQPRVLWDGG 199

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVE 120
             I    C+ CG C   CP +A++E
Sbjct: 200 MQIGGSSCVSCGHCITVCPCNALME 224



 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 25/83 (30%), Gaps = 9/83 (10%)

Query: 48  RGEHALRRYPNGEERCIACKL----CEAICPAQAITIESGPRCHDGTRRTV-----RYDI 98
           R E       N    C  C      C     A A+ +E            V      Y  
Sbjct: 100 RAEAFDVILGNHMLYCTVCDNNNENCTVHNTAVAMKVEHQEHPFKPKPYDVDMSNPFYRY 159

Query: 99  DMIKCIYCGLCQEACPVDAIVEG 121
           D  +CI CG C +AC    + E 
Sbjct: 160 DPSQCILCGRCVQACQTVQVNET 182


>gi|317153096|ref|YP_004121144.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316943347|gb|ADU62398.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 1168

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 31/97 (31%), Gaps = 28/97 (28%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTV----------------RYDIDMIKCI 104
           + CI C  C  +CP  AI                                R  I+ + C+
Sbjct: 683 DNCIQCNQCAFVCPHSAIRAVLADPAELKKAPKTFEVLDAVGKDVKGQKFRIQINTLDCM 742

Query: 105 YCGLCQEACP--VDAIVE----------GPNFEFATE 129
            CG C + CP    A+V            PNF+F+  
Sbjct: 743 GCGNCADVCPAKEKALVMQPIVSQTPVQTPNFDFSQT 779


>gi|260464286|ref|ZP_05812478.1| dihydroorotate dehydrogenase family protein [Mesorhizobium
           opportunistum WSM2075]
 gi|259029910|gb|EEW31194.1| dihydroorotate dehydrogenase family protein [Mesorhizobium
           opportunistum WSM2075]
          Length = 437

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 6/78 (7%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI C  C       A    S             +++   +C+ 
Sbjct: 330 QYLNLNYVAKARIDQDACIKCGRCHI-----ACEDTSHQAITSMVDGVRHFEVIEAECVG 384

Query: 106 CGLCQEACPV-DAIVEGP 122
           C LC   CPV + I   P
Sbjct: 385 CNLCVNVCPVENCITMEP 402


>gi|150375768|ref|YP_001312364.1| molybdopterin oxidoreductase [Sinorhizobium medicae WSM419]
 gi|150030315|gb|ABR62431.1| molybdopterin oxidoreductase [Sinorhizobium medicae WSM419]
          Length = 850

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 3/80 (3%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           +   S   R    +    N   RCI C+ C  +C      +  G            ++  
Sbjct: 128 RVFHSKDIRLSPVIIMNVN---RCIQCQRCVRMCEEVVGAVALGTVEKGMDTAVTGFEGS 184

Query: 100 MIKCIYCGLCQEACPVDAIV 119
           +  C  CG C E CPV A++
Sbjct: 185 LASCDQCGNCVEVCPVGALM 204


>gi|325290604|ref|YP_004266785.1| cobyrinic acid ac-diamide synthase [Syntrophobotulus glycolicus DSM
           8271]
 gi|324966005|gb|ADY56784.1| cobyrinic acid ac-diamide synthase [Syntrophobotulus glycolicus DSM
           8271]
          Length = 295

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 11/74 (14%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
              + +      +CI+C LC   C   AI            +   +Y++   +C  CG+C
Sbjct: 56  YFGMPKAVVDYRKCISCGLCLEYCRFNAIK-----------KNNSQYEVSCYECEGCGVC 104

Query: 110 QEACPVDAIVEGPN 123
           +  CPV AI   P+
Sbjct: 105 EAFCPVQAISLQPD 118


>gi|323484501|ref|ZP_08089867.1| hypothetical protein HMPREF9474_01618 [Clostridium symbiosum
           WAL-14163]
 gi|323692562|ref|ZP_08106795.1| NADH dehydrogenase [Clostridium symbiosum WAL-14673]
 gi|323402279|gb|EGA94611.1| hypothetical protein HMPREF9474_01618 [Clostridium symbiosum
           WAL-14163]
 gi|323503428|gb|EGB19257.1| NADH dehydrogenase [Clostridium symbiosum WAL-14673]
          Length = 595

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 35/94 (37%), Gaps = 14/94 (14%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
           +FF+ +   +   ++           AL  Y    E+C  C LC   CPA AI       
Sbjct: 514 HFFRDEYEAHIKEKRCPAGVC----KALLSYVIDREKCRGCTLCAKNCPAGAIIGT---- 565

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
                     + ID  KCI CG C E C   AI 
Sbjct: 566 ------VKNPHIIDNEKCIKCGACMEKCHFGAIY 593



 Score = 35.1 bits (79), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 18/43 (41%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            I+         +  + Y ID  KC  C LC + CP  AI+  
Sbjct: 523 HIKEKRCPAGVCKALLSYVIDREKCRGCTLCAKNCPAGAIIGT 565


>gi|317055057|ref|YP_004103524.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Ruminococcus albus 7]
 gi|315447326|gb|ADU20890.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Ruminococcus albus 7]
          Length = 603

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 16/93 (17%)

Query: 38  FEKGSTSPRFRGEHAL-----RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
            EKG  +  F+   A+     R      E+CI C+ C+ +                   R
Sbjct: 522 EEKGVKAIIFKSPCAVLIKPERPAVIDTEKCINCQKCKNLLGC-----------PGLVLR 570

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
             +  I+   C  CGLC + CPV+AI  G N E
Sbjct: 571 DGKIAIEESLCTGCGLCAQVCPVNAIGGGKNAE 603


>gi|260892248|ref|YP_003238345.1| NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding
           protein [Ammonifex degensii KC4]
 gi|260864389|gb|ACX51495.1| NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding
           protein [Ammonifex degensii KC4]
          Length = 826

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/121 (24%), Positives = 40/121 (33%), Gaps = 23/121 (19%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
           FE        + +  + R  N    CI C  C  +C  Q   I    +    TR     D
Sbjct: 126 FEVRDPGYEVKEDLFIVRDYN---LCILCGRCIRVCRTQGADILDFMKRGIETRVGTPLD 182

Query: 98  --IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRN 155
             +    C +CG C   CP  A+                  +KERL   G  WE E V +
Sbjct: 183 RSLLESGCDFCGSCVSVCPTGAL-----------------MEKERL-GKGREWELEKVHS 224

Query: 156 I 156
            
Sbjct: 225 R 225


>gi|253582598|ref|ZP_04859819.1| electron transport complex protein [Fusobacterium varium ATCC
           27725]
 gi|251835468|gb|EES64008.1| electron transport complex protein [Fusobacterium varium ATCC
           27725]
          Length = 333

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 33/89 (37%), Gaps = 11/89 (12%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
            K     P  K  T      E            CI C LC+  CP  AIT+E+       
Sbjct: 185 KKVISMLPQNKKVTVLCSSKEKGATARKACSTACIGCGLCKKACPVDAITVENNLA---- 240

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                   ID  KCI CGLC   CP +AI
Sbjct: 241 -------KIDPEKCIQCGLCAAKCPTNAI 262



 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 8/60 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E+CI C LC A CP  AI  E             + +I   KC+ C LC + CPV A+
Sbjct: 243 DPEKCIQCGLCAAKCPTNAIKSEIKEV--------KKAEIIEEKCVGCTLCAKVCPVGAV 294



 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 5/70 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQEAC 113
            E++CI+C LC+  CP + I++    +          +           CI CGLC++AC
Sbjct: 169 NEDKCISCGLCQKACPKKVISMLPQNKKVTVLCSSKEKGATARKACSTACIGCGLCKKAC 228

Query: 114 PVDAIVEGPN 123
           PVDAI    N
Sbjct: 229 PVDAITVENN 238



 Score = 41.2 bits (95), Expect = 0.042,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 10/81 (12%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           K  T+        +++    EE+C+ C LC  +CP  A+  E   +            ID
Sbjct: 256 KCPTNAIKSEIKEVKKAEIIEEKCVGCTLCAKVCPVGAVEGELKAKHK----------ID 305

Query: 100 MIKCIYCGLCQEACPVDAIVE 120
             KCI CGLC + C + AI  
Sbjct: 306 QEKCIGCGLCFDKCKLKAIKM 326



 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 14/76 (18%)

Query: 52  ALRRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           A+  Y  G++ C+        CE +CP  AI +                 ++  KCI CG
Sbjct: 128 AMMLYAGGDKSCVYSCLGHGDCERVCPVNAIKVNDKGIAE----------VNEDKCISCG 177

Query: 108 LCQEACPVDAIVEGPN 123
           LCQ+ACP   I   P 
Sbjct: 178 LCQKACPKKVISMLPQ 193


>gi|229171373|ref|ZP_04298958.1| formate dehydrogenase [Bacillus cereus MM3]
 gi|228612077|gb|EEK69314.1| formate dehydrogenase [Bacillus cereus MM3]
          Length = 969

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +        +    R +
Sbjct: 116 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWNLDRPRVI 173

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
                 I+   C+ CG C   CP +A++E
Sbjct: 174 WDHGVSINDSSCVSCGQCVTVCPCNALME 202



 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 82  RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 141

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 142 CIACGQCVEVC 152


>gi|220925073|ref|YP_002500375.1| formate dehydrogenase subunit alpha [Methylobacterium nodulans ORS
           2060]
 gi|219949680|gb|ACL60072.1| formate dehydrogenase, alpha subunit [Methylobacterium nodulans ORS
           2060]
          Length = 988

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 25/88 (28%), Gaps = 8/88 (9%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC---PAQAITIESGPRCHDGTR 91
            +P E             +         CI C LC   C       +   +         
Sbjct: 189 RFPSEARWQPDASHPAMRVNLD-----ACIQCNLCVRACREVQVNDVIGMAYRNADAKVV 243

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIV 119
                 +    C+ CG C +ACP  A++
Sbjct: 244 FDFDDPMGQSTCVACGECVQACPTGALM 271


>gi|187250889|ref|YP_001875371.1| Fe-hydrogenase large subunit family protein [Elusimicrobium minutum
           Pei191]
 gi|186971049|gb|ACC98034.1| Fe-hydrogenase large subunit family protein [Elusimicrobium minutum
           Pei191]
          Length = 478

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 6/70 (8%)

Query: 57  PNGEERCIACKLCEAICPAQA------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
                +C  C  C++ CP  A         E+ P       +  R  ID   CI CG C 
Sbjct: 144 YIEPAKCKNCGKCKSACPYGAILKLNVPCEEACPVNAIKKDQKGRAIIDHSMCISCGRCM 203

Query: 111 EACPVDAIVE 120
           + CP  AI+E
Sbjct: 204 KVCPFGAIME 213



 Score = 37.8 bits (86), Expect = 0.57,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 13/68 (19%)

Query: 53  LRRYPNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
           +R      E C  C  + C   CP  AI++++G           R  I+  KC  CG C+
Sbjct: 109 MRSNYMVTEVCQGCVARQCIYDCPFNAISMQNG-----------RAYIEPAKCKNCGKCK 157

Query: 111 EACPVDAI 118
            ACP  AI
Sbjct: 158 SACPYGAI 165


>gi|220919681|ref|YP_002494984.1| formate dehydrogenase, alpha subunit [Methylobacterium nodulans ORS
           2060]
 gi|219952101|gb|ACL62492.1| formate dehydrogenase, alpha subunit [Methylobacterium nodulans ORS
           2060]
          Length = 988

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 25/88 (28%), Gaps = 8/88 (9%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC---PAQAITIESGPRCHDGTR 91
            +P E             +         CI C LC   C       +   +         
Sbjct: 189 RFPSEARWQPDASHPAMRVNLD-----ACIQCNLCVRACREVQVNDVIGMAYRNADAKVV 243

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIV 119
                 +    C+ CG C +ACP  A++
Sbjct: 244 FDFDDPMGQSTCVACGECVQACPTGALM 271


>gi|217971445|ref|YP_002356196.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella baltica OS223]
 gi|217496580|gb|ACK44773.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           baltica OS223]
          Length = 553

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 30/82 (36%), Gaps = 9/82 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E+C  C  C AICP  A+                        C+ CGLC+ ACP   I
Sbjct: 419 NVEKCTMCMSCVAICPTVALQDGGDKPALH---------FIEQNCVQCGLCEAACPEKVI 469

Query: 119 VEGPNFEFATETRQELYYDKER 140
              P   F    RQ+ +  KE 
Sbjct: 470 SLTPQINFDKAARQQQHTLKEE 491



 Score = 38.9 bits (89), Expect = 0.24,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 11/53 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C   CPA AI+  +              +ID   C   G C  ACP  AI
Sbjct: 195 CNRCLNFCPADAISSVAKK-----------IEIDPYLCHGAGSCTSACPTGAI 236


>gi|121535575|ref|ZP_01667382.1| hydrogenase large subunit domain protein [Thermosinus
           carboxydivorans Nor1]
 gi|121305815|gb|EAX46750.1| hydrogenase large subunit domain protein [Thermosinus
           carboxydivorans Nor1]
          Length = 499

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV------RYDIDMIKCIYCGLCQ 110
              + RC+ C LC+  CP  AI   S P       + V      R  I+  KC+ CG C+
Sbjct: 137 FIDKNRCVECGLCKRSCPYGAIIEVSRPCERACDLKAVVAGADRRAVINYDKCVQCGACK 196

Query: 111 EACPVDAI 118
            ACP  AI
Sbjct: 197 IACPFGAI 204



 Score = 40.9 bits (94), Expect = 0.064,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 3/66 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 ++ I    C        I             R     ID  +C+ CGLC+ +CP
Sbjct: 98  CDRCPIDKFIVTDACRNCVAHHCINSCPKKAIAVVQNRAF---IDKNRCVECGLCKRSCP 154

Query: 115 VDAIVE 120
             AI+E
Sbjct: 155 YGAIIE 160


>gi|116626038|ref|YP_828194.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing
           protein [Candidatus Solibacter usitatus Ellin6076]
 gi|116229200|gb|ABJ87909.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Candidatus Solibacter usitatus Ellin6076]
          Length = 1190

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 29/105 (27%), Gaps = 24/105 (22%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHD 88
           T+   +   AL      ++ CI C  C  +CP                A           
Sbjct: 675 TAQWEKRNIALEIPEWDQDLCIQCGKCVLVCPHSVIRAKVYDDSYLGNAPATFKAVPARW 734

Query: 89  GTRRTVRY--DIDMIKCIYCGLCQEACPV--------DAIVEGPN 123
              +  +Y   +    C  C LC + CP          AI   P 
Sbjct: 735 KDMKDRKYTLQVAPEDCTGCTLCVQVCPAKSKSEVKHRAINMVPQ 779


>gi|94267644|ref|ZP_01290947.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
 gi|93451914|gb|EAT02640.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
          Length = 450

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 18/87 (20%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            + C+ C  C  +CP  A  I+   R                 C+ CGLC  ACP  AI 
Sbjct: 277 NDYCVKCLNCVRLCPYDAPRIDRTARVP------------AEHCLACGLCYGACPTGAIR 324

Query: 120 EGPNFEFATETRQELYYDKERLLNNGD 146
              N      + ++L    +RLL   D
Sbjct: 325 LQNN------SPEQLAASSQRLLAELD 345


>gi|330957741|gb|EGH58001.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 291

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 10/75 (13%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           RG    +     E  CI C  C   CP  AI   +           + + + + +C  C 
Sbjct: 76  RGAAPAQVAFIREAECIGCTKCIQACPVDAIVGAAK----------LMHTVIIDECTGCD 125

Query: 108 LCQEACPVDAIVEGP 122
           LC   CPVD I   P
Sbjct: 126 LCIAPCPVDCIDMHP 140


>gi|298717366|ref|YP_003730008.1| molybdopterin oxidoreductase family protein [Pantoea vagans C9-1]
 gi|298361555|gb|ADI78336.1| molybdopterin oxidoreductase family protein [Pantoea vagans C9-1]
          Length = 990

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 3/81 (3%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICP---AQAITIESGPRCHDGTRRTVRYD 97
                 +  +H+   Y    ++CI C  C   C              + H         +
Sbjct: 127 PHQPKPYAKDHSNPFYTYDPDQCILCGRCVEACQNVEVNETLSIDYTQAHPRVLWDGGTE 186

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           I    C+ CG C   CP +A+
Sbjct: 187 IAGSSCVSCGHCVTVCPCNAL 207



 Score = 37.4 bits (85), Expect = 0.62,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 20/69 (28%), Gaps = 9/69 (13%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAIT-----IESGPRCHDGTRRTVRYDIDMIKCI 104
           R     E  C  C      C        +          P+ +        Y  D  +CI
Sbjct: 91  RLLNRHELYCTVCEHNTGDCTLHNAVADMHIPIQYYPHQPKPYAKDHSNPFYTYDPDQCI 150

Query: 105 YCGLCQEAC 113
            CG C EAC
Sbjct: 151 LCGRCVEAC 159


>gi|157364627|ref|YP_001471394.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Thermotoga lettingae TMO]
 gi|157315231|gb|ABV34330.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Thermotoga lettingae TMO]
          Length = 100

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 10/91 (10%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E G+      G+  ++R      +CI C +C   CP  AI  E+               I
Sbjct: 18  EPGTARKYKTGDWRVKRPVYDRSKCIDCMMCWFYCPDLAIIQENSVMKG----------I 67

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           +   C  CG+C   CP +AI   P  EF+ E
Sbjct: 68  NYFYCKGCGICANVCPRNAIEMRPETEFSHE 98


>gi|126176318|ref|YP_001052467.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella baltica OS155]
 gi|125999523|gb|ABN63598.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           baltica OS155]
          Length = 553

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 30/82 (36%), Gaps = 9/82 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E+C  C  C AICP  A+                        C+ CGLC+ ACP   I
Sbjct: 419 NVEKCTMCMSCVAICPTVALQDGGDKPALH---------FIEQNCVQCGLCEAACPEKVI 469

Query: 119 VEGPNFEFATETRQELYYDKER 140
              P   F    RQ+ +  KE 
Sbjct: 470 SLTPQINFDKAARQQQHTLKEE 491



 Score = 38.9 bits (89), Expect = 0.24,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 11/53 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C   CPA AI+  +              +ID   C   G C  ACP  AI
Sbjct: 195 CNRCLNFCPADAISSVAKK-----------IEIDPYLCHGAGSCTSACPTGAI 236


>gi|325570024|ref|ZP_08145949.1| pyruvate-ferredoxin oxidoreductase [Enterococcus casseliflavus ATCC
           12755]
 gi|325156852|gb|EGC69023.1| pyruvate-ferredoxin oxidoreductase [Enterococcus casseliflavus ATCC
           12755]
          Length = 1227

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 31/83 (37%), Gaps = 20/83 (24%)

Query: 61  ERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTVRYDIDMIKCI 104
           +RC  C  C  +CP  AI                 I    R  +G +   R  + +  C 
Sbjct: 690 DRCTMCNECAFVCPHAAIRPFLADEDELTEAPEGFIVREMRGANGQKY--RIQVSVEDCT 747

Query: 105 YCGLCQEACPV--DAIVEGPNFE 125
            CGLC EACP    A+   P  E
Sbjct: 748 GCGLCVEACPAKGKALTMRPYEE 770



 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 4/54 (7%)

Query: 101 IKCIYCGLCQEACPVDAI--VEGPNFEFATETRQELYYDKERLLNNGDRWESEI 152
            +C  C  C   CP  AI        E  TE  +     +E    NG ++  ++
Sbjct: 690 DRCTMCNECAFVCPHAAIRPFLADEDEL-TEAPEGFIV-REMRGANGQKYRIQV 741


>gi|315651297|ref|ZP_07904325.1| Fe-hydrogenase large subunit family protein [Eubacterium saburreum
           DSM 3986]
 gi|315486449|gb|EFU76803.1| Fe-hydrogenase large subunit family protein [Eubacterium saburreum
           DSM 3986]
          Length = 507

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 6/66 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQEA 112
            +E+CI C  C  +C   AI I++ P                + DID  KC+ CG C   
Sbjct: 150 NQEKCIKCGRCANVCAYNAIIIQTRPCAASCGMDAISSDENGKADIDYDKCVSCGQCLVN 209

Query: 113 CPVDAI 118
           CP  AI
Sbjct: 210 CPFGAI 215



 Score = 38.9 bits (89), Expect = 0.24,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 27/92 (29%), Gaps = 9/92 (9%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
              T   P           G    R Y     +      C  +CP  A+ I+        
Sbjct: 90  KAETYYTPPLINIIKFACHGCVEKRVYVTNGCQGCLAHPCAEVCPTGAVKIDKESGFSS- 148

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
                   I+  KCI CG C   C  +AI+  
Sbjct: 149 --------INQEKCIKCGRCANVCAYNAIIIQ 172


>gi|257875571|ref|ZP_05655224.1| pyruvate decarboxylase [Enterococcus casseliflavus EC20]
 gi|257809737|gb|EEV38557.1| pyruvate decarboxylase [Enterococcus casseliflavus EC20]
          Length = 1227

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 31/83 (37%), Gaps = 20/83 (24%)

Query: 61  ERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTVRYDIDMIKCI 104
           +RC  C  C  +CP  AI                 I    R  +G +   R  + +  C 
Sbjct: 690 DRCTMCNECAFVCPHAAIRPFLADEDELTEAPEGFIVREMRGANGQKY--RIQVSVEDCT 747

Query: 105 YCGLCQEACPV--DAIVEGPNFE 125
            CGLC EACP    A+   P  E
Sbjct: 748 GCGLCVEACPAKGKALTMRPYEE 770



 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 4/54 (7%)

Query: 101 IKCIYCGLCQEACPVDAI--VEGPNFEFATETRQELYYDKERLLNNGDRWESEI 152
            +C  C  C   CP  AI        E  TE  +     +E    NG ++  ++
Sbjct: 690 DRCTMCNECAFVCPHAAIRPFLADEDEL-TEAPEGFIV-REMRGANGQKYRIQV 741


>gi|257865944|ref|ZP_05645597.1| pyruvate decarboxylase [Enterococcus casseliflavus EC30]
 gi|257872277|ref|ZP_05651930.1| pyruvate decarboxylase [Enterococcus casseliflavus EC10]
 gi|257799878|gb|EEV28930.1| pyruvate decarboxylase [Enterococcus casseliflavus EC30]
 gi|257806441|gb|EEV35263.1| pyruvate decarboxylase [Enterococcus casseliflavus EC10]
          Length = 1227

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 31/83 (37%), Gaps = 20/83 (24%)

Query: 61  ERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTVRYDIDMIKCI 104
           +RC  C  C  +CP  AI                 I    R  +G +   R  + +  C 
Sbjct: 690 DRCTMCNECAFVCPHAAIRPFLADEDELTEAPEGFIVREMRGANGQKY--RIQVSVEDCT 747

Query: 105 YCGLCQEACPV--DAIVEGPNFE 125
            CGLC EACP    A+   P  E
Sbjct: 748 GCGLCVEACPAKGKALTMRPYEE 770



 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 4/54 (7%)

Query: 101 IKCIYCGLCQEACPVDAI--VEGPNFEFATETRQELYYDKERLLNNGDRWESEI 152
            +C  C  C   CP  AI        E  TE  +     +E    NG ++  ++
Sbjct: 690 DRCTMCNECAFVCPHAAIRPFLADEDEL-TEAPEGFIV-REMRGANGQKYRIQV 741


>gi|225619733|ref|YP_002720990.1| iron only hydrogenase large subunit, C-terminal domain-containing
           protein [Brachyspira hyodysenteriae WA1]
 gi|225214552|gb|ACN83286.1| iron only hydrogenase large subunit, C-terminal domain protein
           [Brachyspira hyodysenteriae WA1]
          Length = 490

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 6/69 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGT------RRTVRYDIDMIKCIYCGLCQ 110
                +CI C LC   CP  AI     P                +  ID  KCI+CG C 
Sbjct: 144 HIDSSKCINCGLCLKNCPYHAIIYIPVPCEESCPVGAINKNDQGKEVIDYHKCIFCGNCM 203

Query: 111 EACPVDAIV 119
             CP  A++
Sbjct: 204 RECPFSAMM 212



 Score = 40.9 bits (94), Expect = 0.061,   Method: Composition-based stats.
 Identities = 26/64 (40%), Positives = 29/64 (45%), Gaps = 12/64 (18%)

Query: 61  ERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             C AC  + C   CP  AITI    R H          ID  KCI CGLC + CP  AI
Sbjct: 116 NACQACLARPCMVNCPKDAITILDEKRAH----------IDSSKCINCGLCLKNCPYHAI 165

Query: 119 VEGP 122
           +  P
Sbjct: 166 IYIP 169


>gi|163736984|ref|ZP_02144402.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Phaeobacter
           gallaeciensis BS107]
 gi|161389588|gb|EDQ13939.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Phaeobacter
           gallaeciensis BS107]
          Length = 649

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/119 (19%), Positives = 34/119 (28%), Gaps = 14/119 (11%)

Query: 23  CLRYFFKAKTTINYP-FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
             R   +       P  E             L    N    C  C  C ++CP+ A+   
Sbjct: 464 TRRQITRQAAKALVPTAETLPLPEGAPYGAVLVSSDN----CTLCLSCVSLCPSGALGDN 519

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140
                        +       C+ CGLC   CP DAI   P      +   ++   +E 
Sbjct: 520 PD---------LPQLRFQEDACLQCGLCATICPEDAITYEPRLNLTPDALSQVVLHEEE 569



 Score = 37.4 bits (85), Expect = 0.63,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 19/55 (34%), Gaps = 11/55 (20%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             C  C  ICP  AI+                  ID + C  CG C   CP  AI
Sbjct: 276 TGCTRCLDICPTGAISPAGD-----------HVSIDPMICAGCGSCASLCPSGAI 319


>gi|153940176|ref|YP_001392096.1| dihydropyrimidine dehydrogenase [Clostridium botulinum F str.
           Langeland]
 gi|152936072|gb|ABS41570.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum
           F str. Langeland]
 gi|295320101|gb|ADG00479.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum
           F str. 230613]
          Length = 411

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 33/110 (30%), Gaps = 7/110 (6%)

Query: 15  EFVGAFFLCLRY-FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
           + +      ++   F+    +     K            +      EE C+ C  C   C
Sbjct: 295 DMIEGLSYYMKEKGFEKLEDMVGLANKNIIPAEDLDRGYIVYPKFNEENCVGCGRCYISC 354

Query: 74  PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                    G +      +  +  +D   C+ C LC   CPV  I +G  
Sbjct: 355 YDG------GHQAIKWDGKNRKPMLDKENCVGCHLCANVCPVQCISKGEI 398


>gi|84489021|ref|YP_447253.1| Fe-S center containing protein [Methanosphaera stadtmanae DSM 3091]
 gi|84372340|gb|ABC56610.1| predicted Fe-S center containing protein [Methanosphaera stadtmanae
           DSM 3091]
          Length = 367

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 36/108 (33%), Gaps = 22/108 (20%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +  F   L+       +      +   +  F  + A          C+AC +C   CP 
Sbjct: 159 ILAGFGGALKNLAMGCASRRGKIHQHKIAAPFISKIA----------CLACNVCIDACPE 208

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
            AIT++                I+  KCI C  C  ACP +AI     
Sbjct: 209 NAITVD------------THAHINYEKCIGCNDCIGACPKNAIKLNKI 244


>gi|52785968|ref|YP_091797.1| YjgC [Bacillus licheniformis ATCC 14580]
 gi|52348470|gb|AAU41104.1| YjgC [Bacillus licheniformis ATCC 14580]
          Length = 1010

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 9/101 (8%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            ++         + PF++      +  + +   Y    ++CI C  C   C    +T   
Sbjct: 139 TVKEM--KVNHQSIPFDQKP----YHKDESNPFYRYDPDQCILCGRCVEACQDVQVTETL 192

Query: 83  GPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPVDAIVE 120
                    R +  +   I+   C+ CG C   CP +A++E
Sbjct: 193 TIDWERKRPRVIWDNDVPINESSCVSCGHCSTVCPCNAMME 233



 Score = 40.5 bits (93), Expect = 0.083,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 21/66 (31%), Gaps = 9/66 (13%)

Query: 57  PNGEERCIAC----KLCEAI-----CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
            N E  C  C      CE             +I    + +        Y  D  +CI CG
Sbjct: 118 YNHELYCTVCDYNNGGCEIHNTVKEMKVNHQSIPFDQKPYHKDESNPFYRYDPDQCILCG 177

Query: 108 LCQEAC 113
            C EAC
Sbjct: 178 RCVEAC 183


>gi|294617417|ref|ZP_06697051.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecium E1679]
 gi|291596323|gb|EFF27582.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecium E1679]
          Length = 731

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 20/93 (21%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTV 94
            AL       +RC  C  C  +CP  AI                 I    R  DG +   
Sbjct: 181 VALEVPQWISDRCTMCNECAFVCPHAAIRPFLADEEEMEEAPEGFIVREMRGADGVKY-- 238

Query: 95  RYDIDMIKCIYCGLCQEACP--VDAIVEGPNFE 125
           R  + +  C  CGLC EACP    A+V  P  E
Sbjct: 239 RIQVSVEDCTGCGLCVEACPAKEKALVMKPYEE 271


>gi|196041311|ref|ZP_03108605.1| molybdopterin oxidoreductase family protein [Bacillus cereus
           NVH0597-99]
 gi|196027796|gb|EDX66409.1| molybdopterin oxidoreductase family protein [Bacillus cereus
           NVH0597-99]
          Length = 978

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +             R +
Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
                 I+   C+ CG C   CP +A++E
Sbjct: 183 WDHGVSINDSSCVSCGQCVTVCPCNALME 211



 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|31747592|gb|AAO38266.1| NADP-reducing hydrogenase subunit C [Leptospirillum ferrooxidans]
          Length = 617

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 10/66 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L +Y   EE C  C LCE +CP+ ++T E G   H          ID+  CI C  C +A
Sbjct: 561 LIKYVVIEEDCTTCGLCEPVCPSGSVTWEKGEVAH----------IDLTTCIRCKACVDA 610

Query: 113 CPVDAI 118
           C   AI
Sbjct: 611 CKFRAI 616



 Score = 33.9 bits (76), Expect = 6.7,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 15/42 (35%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            I             ++Y +    C  CGLC+  CP  ++  
Sbjct: 547 HIRDKRCPGTVCNDLIKYVVIEEDCTTCGLCEPVCPSGSVTW 588


>gi|257869231|ref|ZP_05648884.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Enterococcus
           gallinarum EG2]
 gi|257803395|gb|EEV32217.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Enterococcus
           gallinarum EG2]
          Length = 1231

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 29/80 (36%), Gaps = 18/80 (22%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTV 94
            AL       +RC  C  C  +CP  AI                 I    R  DG +  +
Sbjct: 680 IALEVPEWLSDRCTMCNECAFVCPHAAIRPFLVDEDELTEAPEGFIVREMRGKDGQKYRI 739

Query: 95  RYDIDMIKCIYCGLCQEACP 114
           +  I    C  CGLC EACP
Sbjct: 740 QVSI--EDCTGCGLCVEACP 757



 Score = 34.3 bits (77), Expect = 5.9,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 4/54 (7%)

Query: 101 IKCIYCGLCQEACPVDAI--VEGPNFEFATETRQELYYDKERLLNNGDRWESEI 152
            +C  C  C   CP  AI        E  TE  +     +E    +G ++  ++
Sbjct: 690 DRCTMCNECAFVCPHAAIRPFLVDEDEL-TEAPEGFIV-REMRGKDGQKYRIQV 741


>gi|257470438|ref|ZP_05634529.1| electron transport complex, RnfABCDGE type, B subunit
           [Fusobacterium ulcerans ATCC 49185]
 gi|317064646|ref|ZP_07929131.1| electron transport complex protein [Fusobacterium ulcerans ATCC
           49185]
 gi|313690322|gb|EFS27157.1| electron transport complex protein [Fusobacterium ulcerans ATCC
           49185]
          Length = 333

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 33/89 (37%), Gaps = 11/89 (12%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
            K     P  K  T      E            CI C LC+  CP  AIT+E+       
Sbjct: 185 KKVISMLPQNKKVTVLCSSKEKGATARKACSTACIGCGLCKKACPVDAITVENNLA---- 240

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                   ID  KCI CGLC   CP +AI
Sbjct: 241 -------KIDPEKCIQCGLCAAKCPTNAI 262



 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 8/60 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E+CI C LC A CP  AI  E             + +I   KC+ C LC + CPV A+
Sbjct: 243 DPEKCIQCGLCAAKCPTNAIKSEIKE--------IKKAEIIEEKCVGCTLCAKVCPVGAV 294



 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 5/70 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQEAC 113
            E++CI+C LC+  CP + I++    +          +           CI CGLC++AC
Sbjct: 169 DEDKCISCGLCQKACPKKVISMLPQNKKVTVLCSSKEKGATARKACSTACIGCGLCKKAC 228

Query: 114 PVDAIVEGPN 123
           PVDAI    N
Sbjct: 229 PVDAITVENN 238



 Score = 42.0 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 10/81 (12%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           K  T+        +++    EE+C+ C LC  +CP  A+  E   +            ID
Sbjct: 256 KCPTNAIKSEIKEIKKAEIIEEKCVGCTLCAKVCPVGAVEGELKAKHK----------ID 305

Query: 100 MIKCIYCGLCQEACPVDAIVE 120
             KCI CGLC + C + AI  
Sbjct: 306 QEKCIGCGLCFDKCKLKAIKM 326



 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 14/76 (18%)

Query: 52  ALRRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           A+  Y  G++ C+        CE +CP  AI +                 +D  KCI CG
Sbjct: 128 AMMLYAGGDKSCVYSCLGHGDCERVCPVNAIKVNDKGIAE----------VDEDKCISCG 177

Query: 108 LCQEACPVDAIVEGPN 123
           LCQ+ACP   I   P 
Sbjct: 178 LCQKACPKKVISMLPQ 193


>gi|257463641|ref|ZP_05628032.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. D12]
 gi|317061193|ref|ZP_07925678.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. D12]
 gi|313686869|gb|EFS23704.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. D12]
          Length = 1193

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 39/122 (31%), Gaps = 22/122 (18%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE---SGPRCHDGTRRTV 94
           FE G+++   RG        +   +CI C  C  +CP   I         +         
Sbjct: 677 FENGTSAFEKRGVAVDVPLWD-STKCIQCNQCSYVCPHAVIRPFLVSEEEKAASPVAFDT 735

Query: 95  -------------RYDIDMIKCIYCGLCQEACPVD--AIVEGPN---FEFATETRQELYY 136
                        R  +  + C+ CG C   CP    AI   P     +   + + +  +
Sbjct: 736 LKAMGKGLDGLTYRIQVSPLDCVGCGSCVNVCPAPGKAITMQPIAMSMDAEEDKKADYLF 795

Query: 137 DK 138
           +K
Sbjct: 796 NK 797


>gi|296136161|ref|YP_003643403.1| hypothetical protein Tint_1703 [Thiomonas intermedia K12]
 gi|295796283|gb|ADG31073.1| hypothetical protein Tint_1703 [Thiomonas intermedia K12]
          Length = 273

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 40/112 (35%), Gaps = 20/112 (17%)

Query: 29  KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA-----CKLCEAICPAQAITIESG 83
           K + T  +P   G       G+  +   P  +  C +     C  C A CPA AIT    
Sbjct: 11  KGRATTPWPERPGPD-----GQEGVLGLPRFDATCCSSEQSGCSDCVAACPASAITRSEA 65

Query: 84  PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
                         +D  +C+ C LC E CP  A     ++ F    + +L 
Sbjct: 66  GAI----------QLDYARCVGCQLCTEVCPEGAFSVSHDWAFGVRDKADLL 107


>gi|229137387|ref|ZP_04265999.1| formate dehydrogenase [Bacillus cereus BDRD-ST26]
 gi|228646086|gb|EEL02308.1| formate dehydrogenase [Bacillus cereus BDRD-ST26]
          Length = 969

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +             R +
Sbjct: 116 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 173

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
                 I+   C+ CG C   CP +A++E
Sbjct: 174 WDHGVSINDSSCVSCGQCVTVCPCNALME 202



 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 82  RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 141

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 142 CIACGQCVEVC 152


>gi|126465204|ref|YP_001040313.1| indolepyruvate ferredoxin oxidoreductase, subunit iorA
           [Staphylothermus marinus F1]
 gi|126014027|gb|ABN69405.1| indolepyruvate ferredoxin oxidoreductase, subunit iorA
           [Staphylothermus marinus F1]
          Length = 624

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 9/73 (12%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
                L  Y   +++C  C +C  +    AI +  G +            I    C  CG
Sbjct: 548 HKGIKLPVYTILQDKCTGCMVCVNLLGCPAIIVPKGAKKP---------VILSELCAGCG 598

Query: 108 LCQEACPVDAIVE 120
           LC + CP +AIV 
Sbjct: 599 LCAQVCPFNAIVL 611


>gi|319645446|ref|ZP_07999678.1| YjgC protein [Bacillus sp. BT1B_CT2]
 gi|317392332|gb|EFV73127.1| YjgC protein [Bacillus sp. BT1B_CT2]
          Length = 1035

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 9/101 (8%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            ++         + PF++      +  + +   Y    ++CI C  C   C    +T   
Sbjct: 164 TVKEM--KVNHQSIPFDQKP----YHKDESNPFYRYDPDQCILCGRCVEACQDVQVTETL 217

Query: 83  GPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPVDAIVE 120
                    R +  +   I+   C+ CG C   CP +A++E
Sbjct: 218 TIDWERKRPRVIWDNDVPINESSCVSCGHCSTVCPCNAMME 258



 Score = 40.5 bits (93), Expect = 0.086,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 21/66 (31%), Gaps = 9/66 (13%)

Query: 57  PNGEERCIAC----KLCEAI-----CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
            N E  C  C      CE             +I    + +        Y  D  +CI CG
Sbjct: 143 YNHELYCTVCDYNNGGCEIHNTVKEMKVNHQSIPFDQKPYHKDESNPFYRYDPDQCILCG 202

Query: 108 LCQEAC 113
            C EAC
Sbjct: 203 RCVEAC 208


>gi|312897374|ref|ZP_07756798.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Megasphaera
           micronuciformis F0359]
 gi|310621435|gb|EFQ04971.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Megasphaera
           micronuciformis F0359]
          Length = 1174

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 34/114 (29%), Gaps = 20/114 (17%)

Query: 31  KTTINYPFEKGSTS-----PRFRGEHALRRYPNGEERCIACKLCEAICPA---------- 75
             +I   FE G           RG        +  E+CI C  C  +CP           
Sbjct: 655 PVSIFDGFEDGHWPTGTCAEEKRGVAMFVPSWDN-EKCIGCNQCSFVCPHAAIRPFLLTD 713

Query: 76  ----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
               +A    +               + ++ C+ CG C   CP  A+   P  E
Sbjct: 714 EEAAKAPEGYTNKVIKTAGDYKYSIVVSVMDCLGCGSCTHVCPKQALTMKPFDE 767


>gi|303257784|ref|ZP_07343794.1| pyridine nucleotide-disulfide oxidoreductase family protein
           [Burkholderiales bacterium 1_1_47]
 gi|302859387|gb|EFL82468.1| pyridine nucleotide-disulfide oxidoreductase family protein
           [Burkholderiales bacterium 1_1_47]
          Length = 542

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 21/62 (33%), Gaps = 8/62 (12%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C+ C  C  +CP  A+                 Y  +   C  CG+C   CP  AI   
Sbjct: 487 NCLQCDNCYGVCPDNAVIKTGDDNVP--------YIFNYDYCKGCGVCASECPCGAIKME 538

Query: 122 PN 123
           P 
Sbjct: 539 PE 540


>gi|291287575|ref|YP_003504391.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290884735|gb|ADD68435.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 778

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 29/98 (29%)

Query: 24  LRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG 83
           L  F KA        +     P      A     +   RC++C  C        +  E  
Sbjct: 672 LDNFEKAPVIPQDKIKDEYYHPLNATRVAEMEAGDETTRCMSCGFCRDCSFCLEVCPEQA 731

Query: 84  PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
               +    T  Y  +  KCI CG+C   CP       
Sbjct: 732 ITRTENPDGTFEYLSNPSKCIGCGICAGVCPCGVWTMH 769


>gi|188587083|ref|YP_001918628.1| glycyl-radical enzyme activating protein family [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179351770|gb|ACB86040.1| glycyl-radical enzyme activating protein family [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 310

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 38/99 (38%), Gaps = 11/99 (11%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           +        G     +       C+ C LC+ ICP  AI  E                I+
Sbjct: 41  RCEWCHNPEGLAFESQLLIHHNSCMDCGLCQEICPENAIFTEQN-----------STQIN 89

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
             KC  C +CQE+CPV+AI        A +  +E+  DK
Sbjct: 90  QEKCKKCSICQESCPVNAIEMIGEQMTANKVIEEVEKDK 128



 Score = 37.0 bits (84), Expect = 0.84,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 18/48 (37%)

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                       +G     +  I    C+ CGLCQE CP +AI    N
Sbjct: 37  GCPLRCEWCHNPEGLAFESQLLIHHNSCMDCGLCQEICPENAIFTEQN 84


>gi|158634516|gb|ABW76110.1| pyruvate:ferredoxin oxidoreductase [Trimastix pyriformis]
          Length = 1200

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/107 (18%), Positives = 33/107 (30%), Gaps = 19/107 (17%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQ--------------AITIESGPRCHDGTR-- 91
           RG        +   +C+ C +C  +CP                A   E         +  
Sbjct: 677 RGLAPSVPAWDLNGKCVQCAMCSFVCPHAVIRPYLVTDAEAQAAPYKEGFAVKPTKGKEF 736

Query: 92  --RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
              + R  + ++ C  CG C   CPV A+   P +       +   Y
Sbjct: 737 EGYSFRIQVSVMDCTGCGSCANVCPVKALEMKP-YPTQARQHENWMY 782


>gi|84499617|ref|ZP_00997905.1| NAD-dependent formate dehydrogenase, alpha subunit [Oceanicola
           batsensis HTCC2597]
 gi|84392761|gb|EAQ04972.1| NAD-dependent formate dehydrogenase, alpha subunit [Oceanicola
           batsensis HTCC2597]
          Length = 974

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 29/81 (35%), Gaps = 4/81 (4%)

Query: 55  RYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            +     +CI C  C   C       A+TIES       +      D     C+ CG C 
Sbjct: 187 YFTYDPAKCIVCSRCVRACEEVQGTFALTIESRGFDSRVSFGAKSDDALHSDCVSCGACV 246

Query: 111 EACPVDAIVEGPNFEFATETR 131
           +ACP   + E    E  T  R
Sbjct: 247 QACPTATLQEKSVAEMGTPDR 267


>gi|330502370|ref|YP_004379239.1| electron transport complex protein RnfC [Pseudomonas mendocina
           NK-01]
 gi|328916656|gb|AEB57487.1| electron transport complex protein RnfC [Pseudomonas mendocina
           NK-01]
          Length = 814

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 2/98 (2%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            CI C  C   CPA  +  +       G         ++  CI CG C   CP  +I   
Sbjct: 371 PCIRCGECAEACPAS-LLPQQLHFFALGQEHEQLKAHNLFDCIECGACAYVCP-SSIPLV 428

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
             +  A    +EL   + +  ++  R+E    R    +
Sbjct: 429 QYYRVAKAEIRELEQKQLKAEHSKQRFEQRQERLRRAE 466


>gi|304395180|ref|ZP_07377064.1| formate dehydrogenase, alpha subunit [Pantoea sp. aB]
 gi|304357433|gb|EFM21796.1| formate dehydrogenase, alpha subunit [Pantoea sp. aB]
          Length = 990

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 3/81 (3%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICP---AQAITIESGPRCHDGTRRTVRYD 97
                 +  +H+   Y    ++CI C  C   C              + H         +
Sbjct: 127 PHQPKPYAKDHSNPFYTYDPDQCILCGRCVEACQNVEVNETLSIDYTQAHPRVLWDGGTE 186

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           I    C+ CG C   CP +A+
Sbjct: 187 IAGSSCVSCGHCVTVCPCNAL 207



 Score = 37.4 bits (85), Expect = 0.59,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 20/69 (28%), Gaps = 9/69 (13%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAIT-----IESGPRCHDGTRRTVRYDIDMIKCI 104
           R     E  C  C      C        +          P+ +        Y  D  +CI
Sbjct: 91  RLLNRHELYCTVCEHNTGDCTLHNTVADMHIPIQYYPHQPKPYAKDHSNPFYTYDPDQCI 150

Query: 105 YCGLCQEAC 113
            CG C EAC
Sbjct: 151 LCGRCVEAC 159


>gi|300246023|gb|ADJ94069.1| putative respiratory-chain NADH dehydrogenase [Clostridia bacterium
           enrichment culture clone BF]
          Length = 597

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 32/70 (45%), Gaps = 10/70 (14%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           AL  Y    + C  C  C  +CPA AIT E              + ID  KCI CG C E
Sbjct: 538 ALLEYKIVADNCKGCGACARVCPASAITGEKKEA----------HVIDTSKCIKCGSCIE 587

Query: 112 ACPVDAIVEG 121
            C  +AIV+G
Sbjct: 588 KCKFNAIVKG 597



 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 16/59 (27%), Gaps = 8/59 (13%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
            I             + Y I    C  CG C   CP  AI          E ++    D
Sbjct: 525 HIHDKKCPAGVCSALLEYKIVADNCKGCGACARVCPASAI--------TGEKKEAHVID 575


>gi|294636318|ref|ZP_06714715.1| sulfite reductase, subunit C [Edwardsiella tarda ATCC 23685]
 gi|291090401|gb|EFE22962.1| sulfite reductase, subunit C [Edwardsiella tarda ATCC 23685]
          Length = 335

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 27/88 (30%), Gaps = 8/88 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +    +    G   + R     ERCI C  C   C   A+   S             
Sbjct: 153 CPNDCAKATMADLGVLGIARIKFTPERCIGCGACVRACKHHAVDCLSLHNGKASK----- 207

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                  CI CG C  ACP  A    P+
Sbjct: 208 ---QESLCIGCGECVLACPTLAWQRQPD 232



 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 14/54 (25%), Gaps = 1/54 (1%)

Query: 68  LCEAICPAQAI-TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
               +  A              G     R      +CI CG C  AC   A+  
Sbjct: 144 YHLKVVLAGCPNDCAKATMADLGVLGIARIKFTPERCIGCGACVRACKHHAVDC 197


>gi|294890821|ref|XP_002773331.1| 68 kDa protein, putative [Perkinsus marinus ATCC 50983]
 gi|239878383|gb|EER05147.1| 68 kDa protein, putative [Perkinsus marinus ATCC 50983]
          Length = 614

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 1/74 (1%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
            E  LR     E+RC   K C+  C        +G  C +  R +    I    CI CG+
Sbjct: 16  EEQRLRIAIVSEDRCKP-KKCQLECKKYCPVNRTGKFCVEVDRHSKVSWISETLCIGCGI 74

Query: 109 CQEACPVDAIVEGP 122
           C + CP DAI    
Sbjct: 75  CVKKCPFDAITIIN 88


>gi|167756634|ref|ZP_02428761.1| hypothetical protein CLORAM_02171 [Clostridium ramosum DSM 1402]
 gi|237733922|ref|ZP_04564403.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|167702809|gb|EDS17388.1| hypothetical protein CLORAM_02171 [Clostridium ramosum DSM 1402]
 gi|229383003|gb|EEO33094.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 507

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110
              +++CI C LC+  CP  AI     P         +  D      I+  KC+ CG+C 
Sbjct: 144 YIDQDKCIKCGLCKTNCPYDAILKRERPCAKACGMDAIETDEYGNAHINYDKCVSCGMCL 203

Query: 111 EACPVDAI 118
            +CP  AI
Sbjct: 204 VSCPFGAI 211



 Score = 41.6 bits (96), Expect = 0.033,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 28/92 (30%), Gaps = 11/92 (11%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEER------CIACKLCEAICPAQAITIESGPRCHDGTR 91
            E    S          +Y            C  C   +    +      + P      +
Sbjct: 74  DEPAPISKGIEESIIADKYYEPPLINIIKFACNKCPEKKFEVSSGCQACLAHPCIEVCPK 133

Query: 92  RTVRYD-----IDMIKCIYCGLCQEACPVDAI 118
             + +      ID  KCI CGLC+  CP DAI
Sbjct: 134 NAISFKDGKAYIDQDKCIKCGLCKTNCPYDAI 165


>gi|323484215|ref|ZP_08089584.1| hypothetical protein HMPREF9474_01335 [Clostridium symbiosum
           WAL-14163]
 gi|323692097|ref|ZP_08106344.1| 4Fe-4S ferredoxin [Clostridium symbiosum WAL-14673]
 gi|323402457|gb|EGA94786.1| hypothetical protein HMPREF9474_01335 [Clostridium symbiosum
           WAL-14163]
 gi|323503897|gb|EGB19712.1| 4Fe-4S ferredoxin [Clostridium symbiosum WAL-14673]
          Length = 368

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 11/63 (17%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ++CI C  C+  C   AI+I                 I   KC  CG C   CPVDA+  
Sbjct: 195 DKCIGCGACKRNCAHDAISIAEKKAS-----------IAPDKCAGCGRCIGVCPVDAVAN 243

Query: 121 GPN 123
             +
Sbjct: 244 HCD 246


>gi|238923605|ref|YP_002937121.1| Fe-hydrogenase large subunit family protein [Eubacterium rectale
           ATCC 33656]
 gi|238875280|gb|ACR74987.1| Fe-hydrogenase large subunit family protein [Eubacterium rectale
           ATCC 33656]
          Length = 530

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 6/66 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQEA 112
            +E+CI C  C ++C   AI ++  P                + +ID  KC+ CG C   
Sbjct: 173 DQEKCIKCGRCASVCSYNAIIVQERPCAKACGMDAISSDENGKANIDYDKCVSCGQCLVN 232

Query: 113 CPVDAI 118
           CP  AI
Sbjct: 233 CPFGAI 238



 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 20/63 (31%), Gaps = 7/63 (11%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-------IDMIKCIYCGLCQEACPV 115
           C AC               + P      +  V  D       ID  KCI CG C   C  
Sbjct: 130 CNACPEKRVHVTDGCQGCLAHPCMEVCPKDAVSLDRTTGKSVIDQEKCIKCGRCASVCSY 189

Query: 116 DAI 118
           +AI
Sbjct: 190 NAI 192


>gi|42779733|ref|NP_976980.1| molybdopterin oxidoreductase family protein [Bacillus cereus ATCC
           10987]
 gi|42735650|gb|AAS39588.1| molybdopterin oxidoreductase family protein [Bacillus cereus ATCC
           10987]
          Length = 978

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +             R +
Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
             +   I+   C+ CG C   CP +A++E
Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211



 Score = 39.3 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|319652053|ref|ZP_08006173.1| YjgC protein [Bacillus sp. 2_A_57_CT2]
 gi|317396201|gb|EFV76919.1| YjgC protein [Bacillus sp. 2_A_57_CT2]
          Length = 988

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 12/87 (13%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P+EK  + P +R            ++CI C  C   C    +T            R +  
Sbjct: 134 PYEKDESHPFYR---------YDPDQCILCGRCVEACQDVQVTETLTIDWERERPRVIWD 184

Query: 97  D---IDMIKCIYCGLCQEACPVDAIVE 120
           +   I+   C+ CG C   CP +A++E
Sbjct: 185 NDVPINESSCVSCGHCSTVCPCNAMME 211



 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 9/66 (13%)

Query: 57  PNGEERCIAC----KLCEAICPAQAITIES-----GPRCHDGTRRTVRYDIDMIKCIYCG 107
            N E  C  C      CE     +A+ I         + ++       Y  D  +CI CG
Sbjct: 96  FNHELYCTVCDYNNGGCEIHNTVKAMKINHQSIPFDQKPYEKDESHPFYRYDPDQCILCG 155

Query: 108 LCQEAC 113
            C EAC
Sbjct: 156 RCVEAC 161


>gi|311108198|ref|YP_003981051.1| benzoyl-CoA oxygenase/reductase BoxA [Achromobacter xylosoxidans
           A8]
 gi|310762887|gb|ADP18336.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Achromobacter
           xylosoxidans A8]
          Length = 412

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 11/68 (16%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             L+++    E CI C  CE  CP +AIT +S             Y +D   C  C  C 
Sbjct: 8   EVLKQHLIDPEICIRCNTCEETCPIKAITHDSN-----------NYVVDPEICNGCMACV 56

Query: 111 EACPVDAI 118
             CP  AI
Sbjct: 57  PPCPTGAI 64



 Score = 35.1 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 14/26 (53%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPN 123
           ID   CI C  C+E CP+ AI    N
Sbjct: 15  IDPEICIRCNTCEETCPIKAITHDSN 40


>gi|310777929|ref|YP_003966262.1| dihydroorotate dehydrogenase family protein [Ilyobacter polytropus
           DSM 2926]
 gi|309747252|gb|ADO81914.1| dihydroorotate dehydrogenase family protein [Ilyobacter polytropus
           DSM 2926]
          Length = 366

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 10/61 (16%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E+CI C +C  +CP  AI I                 ID  KC  CG+C   CP DA+  
Sbjct: 315 EKCIGCGICADLCPYHAIHINENKLAV----------IDADKCFGCGVCVSKCPKDAMTI 364

Query: 121 G 121
            
Sbjct: 365 S 365



 Score = 39.3 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 101 IKCIYCGLCQEACPVDAIVEGPN 123
            KCI CG+C + CP  AI    N
Sbjct: 315 EKCIGCGICADLCPYHAIHINEN 337


>gi|261856372|ref|YP_003263655.1| electron transport complex, RnfABCDGE type, C subunit
           [Halothiobacillus neapolitanus c2]
 gi|261836841|gb|ACX96608.1| electron transport complex, RnfABCDGE type, C subunit
           [Halothiobacillus neapolitanus c2]
          Length = 567

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 36/112 (32%), Gaps = 16/112 (14%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            + CI C LC   CPA  +  +         +     +  +  CI CG+C   CP   + 
Sbjct: 375 PQPCIRCSLCAEACPAD-LLPQQLYWYARAKQFDRVVEYHLFDCIECGVCSAVCPSH-LP 432

Query: 120 EGPNFEFATET--------------RQELYYDKERLLNNGDRWESEIVRNIV 157
               + +A                 R+   +  ERL       E+ + +   
Sbjct: 433 LVDYYRYAKTEVWAREREKSKASQARERFEFRNERLERIKAEREAALNKKRQ 484


>gi|15602251|ref|NP_245323.1| electron transport complex protein RnfB [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|17368782|sp|Q9CNP1|RNFB_PASMU RecName: Full=Electron transport complex protein rnfB
 gi|12720633|gb|AAK02470.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 198

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 25/79 (31%), Gaps = 10/79 (12%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
             +    G+ A       E+ CI C  C   CP  AI   +             + I   
Sbjct: 94  PPTTDIEGDPAPMVAFIDEDMCIGCTKCIQACPVDAIIGTNK----------AMHTIIPD 143

Query: 102 KCIYCGLCQEACPVDAIVE 120
            C  C LC   CP D I  
Sbjct: 144 LCTGCELCVPPCPTDCISM 162



 Score = 38.5 bits (88), Expect = 0.28,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 30/78 (38%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
           P  +         +   +CI       +  A+ + +E      +G    +   ID   CI
Sbjct: 57  PGCKPYAEAIANGDDITKCIPGGQTVIVNIAELMGVEPPTTDIEGDPAPMVAFIDEDMCI 116

Query: 105 YCGLCQEACPVDAIVEGP 122
            C  C +ACPVDAI+   
Sbjct: 117 GCTKCIQACPVDAIIGTN 134


>gi|67643798|ref|ZP_00442541.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           mallei GB8 horse 4]
 gi|121599061|ref|YP_992363.1| ferredoxin [Burkholderia mallei SAVP1]
 gi|124385577|ref|YP_001026832.1| ferredoxin [Burkholderia mallei NCTC 10229]
 gi|126451277|ref|YP_001079881.1| ferredoxin [Burkholderia mallei NCTC 10247]
 gi|126453295|ref|YP_001065463.1| ferredoxin [Burkholderia pseudomallei 1106a]
 gi|166999900|ref|ZP_02265729.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           mallei PRL-20]
 gi|242316966|ref|ZP_04815982.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           pseudomallei 1106b]
 gi|254175604|ref|ZP_04882264.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           mallei ATCC 10399]
 gi|254207541|ref|ZP_04913891.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           mallei JHU]
 gi|254258562|ref|ZP_04949616.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           pseudomallei 1710a]
 gi|254359954|ref|ZP_04976224.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           mallei 2002721280]
 gi|121227871|gb|ABM50389.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           mallei SAVP1]
 gi|124293597|gb|ABN02866.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           mallei NCTC 10229]
 gi|126226937|gb|ABN90477.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           pseudomallei 1106a]
 gi|126244147|gb|ABO07240.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           mallei NCTC 10247]
 gi|147751435|gb|EDK58502.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           mallei JHU]
 gi|148029194|gb|EDK87099.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           mallei 2002721280]
 gi|160696648|gb|EDP86618.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           mallei ATCC 10399]
 gi|238525236|gb|EEP88664.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           mallei GB8 horse 4]
 gi|242140205|gb|EES26607.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           pseudomallei 1106b]
 gi|243064025|gb|EES46211.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           mallei PRL-20]
 gi|254217251|gb|EET06635.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           pseudomallei 1710a]
          Length = 290

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 26/81 (32%), Gaps = 10/81 (12%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
             +     E A       E+ CI C LC   CP  AI                 + I   
Sbjct: 66  PLNQAHGVERARPVAFIDEQLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVAE 115

Query: 102 KCIYCGLCQEACPVDAIVEGP 122
            C  C LC   CPVD I   P
Sbjct: 116 LCTGCDLCVPPCPVDCIAMIP 136


>gi|330446984|ref|ZP_08310635.1| sulfite reductase, subunit C [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491175|dbj|GAA05132.1| sulfite reductase, subunit C [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 333

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 28/87 (32%), Gaps = 8/87 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +    +    G   + +     ERCI C  C   C   A+   S             
Sbjct: 153 CPNDCAKANMADFGILGIAKINFTPERCIGCGACVRACQHHAVNCLSLKNGKAVK----- 207

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGP 122
              +  KCI CG C  ACP  A    P
Sbjct: 208 ---EESKCIGCGECVLACPTLAWQRDP 231



 Score = 35.1 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 16/54 (29%), Gaps = 1/54 (1%)

Query: 68  LCEAICPAQAITIESGPRC-HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
               I  A      +       G     + +    +CI CG C  AC   A+  
Sbjct: 144 YHLKIVAAGCPNDCAKANMADFGILGIAKINFTPERCIGCGACVRACQHHAVNC 197


>gi|315657652|ref|ZP_07910534.1| pyridine nucleotide-disulfide oxidoreductase [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
 gi|315492124|gb|EFU81733.1| pyridine nucleotide-disulfide oxidoreductase [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
          Length = 557

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 10/62 (16%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C  C  C  +CP  AIT            R  +Y      C  CG+C E CP  AI   
Sbjct: 504 NCFGCDNCFGVCPDNAITKI----------RPTQYVFKYDYCKGCGICSEECPCGAISMV 553

Query: 122 PN 123
           P 
Sbjct: 554 PE 555


>gi|315654422|ref|ZP_07907330.1| pyridine nucleotide-disulfide oxidoreductase [Mobiluncus curtisii
           ATCC 51333]
 gi|315491457|gb|EFU81074.1| pyridine nucleotide-disulfide oxidoreductase [Mobiluncus curtisii
           ATCC 51333]
          Length = 557

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 10/62 (16%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C  C  C  +CP  AIT            R  +Y      C  CG+C E CP  AI   
Sbjct: 504 NCFGCDNCFGVCPDNAITKI----------RPTQYVFKYDYCKGCGICSEECPCGAISMV 553

Query: 122 PN 123
           P 
Sbjct: 554 PE 555


>gi|304390449|ref|ZP_07372402.1| pyridine nucleotide-disulfide oxidoreductase [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|304326205|gb|EFL93450.1| pyridine nucleotide-disulfide oxidoreductase [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
          Length = 557

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 10/62 (16%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C  C  C  +CP  AIT            R  +Y      C  CG+C E CP  AI   
Sbjct: 504 NCFGCDNCFGVCPDNAITKI----------RPTQYVFKYDYCKGCGICSEECPCGAISMV 553

Query: 122 PN 123
           P 
Sbjct: 554 PE 555


>gi|307594654|ref|YP_003900971.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Vulcanisaeta distributa DSM 14429]
 gi|307549855|gb|ADN49920.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Vulcanisaeta
           distributa DSM 14429]
          Length = 366

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 31/91 (34%), Gaps = 13/91 (14%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P ++        G     R     ++CI C LC   CP     +               +
Sbjct: 248 PNQRNPYFTG--GTAKHYRPVVNFDKCIKCSLCWEYCPDSVFDVTPDG----------YF 295

Query: 97  DIDMIKCIYCGLCQEACPVD-AIVEGPNFEF 126
           +  +  C  CG+C E CPV   I+     EF
Sbjct: 296 NPVLAYCKGCGVCAEVCPVPDTIIMVDEMEF 326


>gi|304439876|ref|ZP_07399770.1| periplasmic hydrogenase 1 [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371615|gb|EFM25227.1| periplasmic hydrogenase 1 [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 501

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPR------CHDGTRRTVRYDIDMIKCIYCGLCQEA 112
             ++C+ C  C+  CP  AI     P          G+    R +ID  KC+ CG C   
Sbjct: 146 DHDKCVKCGRCKDTCPYHAIVDFDRPCSAACGVGAIGSDEYNRAEIDQDKCVACGRCISE 205

Query: 113 CPVDAI 118
           CP  AI
Sbjct: 206 CPFGAI 211



 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 13/60 (21%)

Query: 61  ERCIACK--LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C  C    C  +CP  A+ I              R +ID  KC+ CG C++ CP  AI
Sbjct: 117 DNCRRCMAHPCTNVCPVNAVKIGKH-----------RAEIDHDKCVKCGRCKDTCPYHAI 165


>gi|295675947|ref|YP_003604471.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           sp. CCGE1002]
 gi|295435790|gb|ADG14960.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           sp. CCGE1002]
          Length = 301

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 23/64 (35%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ CI C LC   CP  AI                 + +    C  C LC   CPVD I
Sbjct: 83  DEQVCIGCTLCMQACPVDAIVGAPKQ----------MHTVIAELCTGCDLCVPPCPVDCI 132

Query: 119 VEGP 122
              P
Sbjct: 133 AMLP 136



 Score = 37.4 bits (85), Expect = 0.62,   Method: Composition-based stats.
 Identities = 14/21 (66%), Positives = 15/21 (71%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C LC +ACPVDAI
Sbjct: 82  IDEQVCIGCTLCMQACPVDAI 102


>gi|220931057|ref|YP_002507965.1| hydrogenase large subunit domain protein [Halothermothrix orenii H
           168]
 gi|219992367|gb|ACL68970.1| hydrogenase large subunit domain protein [Halothermothrix orenii H
           168]
          Length = 491

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 6/65 (9%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY------DIDMIKCIYCGLCQEAC 113
            E+C+ C LC   CP  AI     P     +   V        +ID   CI CG C EAC
Sbjct: 148 REKCVECGLCVKACPYGAILEVERPCTSACSLDAVVPGEKSTAEIDDNNCIECGSCIEAC 207

Query: 114 PVDAI 118
           P  AI
Sbjct: 208 PFGAI 212



 Score = 39.3 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 13/60 (21%)

Query: 61  ERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             C  C    C   CP  AITI +               +   KC+ CGLC +ACP  AI
Sbjct: 118 NACRNCVAHHCVNSCPRGAITIVNNQAY-----------VIREKCVECGLCVKACPYGAI 166


>gi|328952561|ref|YP_004369895.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
            protein [Desulfobacca acetoxidans DSM 11109]
 gi|328452885|gb|AEB08714.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
            protein [Desulfobacca acetoxidans DSM 11109]
          Length = 1042

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 26/64 (40%), Gaps = 6/64 (9%)

Query: 59   GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                CI C LCEA CP  AI +   P       +  R +     C  CG+C  ACP  AI
Sbjct: 965  DAYLCIGCGLCEASCPFAAIRLIQVP------GKGYRAENITASCKGCGVCAAACPQRAI 1018

Query: 119  VEGP 122
                
Sbjct: 1019 DMIH 1022



 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 32/95 (33%), Gaps = 18/95 (18%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT-------IESGPRCHDGTRRTVRY 96
              F      R      +RCIAC +C   CP +A                       ++Y
Sbjct: 105 PGHFTVTVRQRPRYIDMDRCIACGVCAEKCPYKAADEFNEGLNQRKAAYVKYPQAVPLKY 164

Query: 97  DIDMIKCIY-----------CGLCQEACPVDAIVE 120
            ID  +CIY           CG C++ CP  A+  
Sbjct: 165 AIDPDRCIYFKPDKKGKIGRCGACEKFCPAGAVNF 199



 Score = 42.0 bits (97), Expect = 0.030,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 25/73 (34%), Gaps = 9/73 (12%)

Query: 54  RRYPNGEERCI------ACKLC---EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
               N    CI       C        +  A    +E  P     T R     IDM +CI
Sbjct: 66  TFPTNDCSMCILSPKLVECGRHLNIHLLTLADVTALEGEPGHFTVTVRQRPRYIDMDRCI 125

Query: 105 YCGLCQEACPVDA 117
            CG+C E CP  A
Sbjct: 126 ACGVCAEKCPYKA 138


>gi|288962204|ref|YP_003452499.1| dihydropyrimidine dehydrogenase (NADP+) [Azospirillum sp. B510]
 gi|288914470|dbj|BAI75955.1| dihydropyrimidine dehydrogenase (NADP+) [Azospirillum sp. B510]
          Length = 427

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 5/66 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117
               CI C  C  +C     T     R   G  R   + +   +C+ C LC   CPV   
Sbjct: 342 DPALCIDCGRCHVVCED---TSHQAIRIDQGEGR-RVFTVVDEECVGCNLCSHVCPVPDC 397

Query: 118 IVEGPN 123
           I   P 
Sbjct: 398 ITMVPE 403


>gi|298345847|ref|YP_003718534.1| glutamate synthase (NADPH) small subunit [Mobiluncus curtisii ATCC
           43063]
 gi|298235908|gb|ADI67040.1| glutamate synthase (NADPH) small subunit [Mobiluncus curtisii ATCC
           43063]
          Length = 557

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 10/62 (16%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C  C  C  +CP  AIT            R  +Y      C  CG+C E CP  AI   
Sbjct: 504 NCFGCDNCFGVCPDNAITKI----------RPTQYVFKYDYCKGCGICSEECPCGAISMV 553

Query: 122 PN 123
           P 
Sbjct: 554 PE 555


>gi|222094341|ref|YP_002528400.1| formate dehydrogenase, alpha subunit, anaerobic [Bacillus cereus
           Q1]
 gi|221238398|gb|ACM11108.1| formate dehydrogenase, alpha subunit, anaerobic [Bacillus cereus
           Q1]
          Length = 978

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +             R +
Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
                 I+   C+ CG C   CP +A++E
Sbjct: 183 WDHGVSINDSSCVSCGQCVTVCPCNALME 211



 Score = 39.3 bits (90), Expect = 0.16,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|24113018|ref|NP_707528.1| electron transport complex protein RnfB [Shigella flexneri 2a str.
           301]
 gi|30063143|ref|NP_837314.1| electron transport complex protein RnfB [Shigella flexneri 2a str.
           2457T]
 gi|82544004|ref|YP_407951.1| electron transport complex protein RnfB [Shigella boydii Sb227]
 gi|81723373|sp|Q83KY6|RNFB_SHIFL RecName: Full=Electron transport complex protein rnfB
 gi|123769444|sp|Q320Y5|RNFB_SHIBS RecName: Full=Electron transport complex protein rnfB
 gi|24051982|gb|AAN43235.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301]
 gi|30041392|gb|AAP17121.1| hypothetical protein S1785 [Shigella flexneri 2a str. 2457T]
 gi|81245415|gb|ABB66123.1| conserved hypothetical protein [Shigella boydii Sb227]
 gi|281601062|gb|ADA74046.1| Electron transport complex protein rnfB [Shigella flexneri 2002017]
 gi|313648903|gb|EFS13340.1| electron transport complex, RnfABCDGE type, B subunit [Shigella
           flexneri 2a str. 2457T]
 gi|332757135|gb|EGJ87475.1| electron transport complex, RnfABCDGE type, B subunit [Shigella
           flexneri 4343-70]
 gi|332758097|gb|EGJ88422.1| electron transport complex, RnfABCDGE type, B subunit [Shigella
           flexneri 2747-71]
 gi|332758458|gb|EGJ88779.1| electron transport complex, RnfABCDGE type, B subunit [Shigella
           flexneri K-671]
 gi|332767029|gb|EGJ97228.1| electron transport complex, RnfABCDGE type, B subunit [Shigella
           flexneri 2930-71]
 gi|333003892|gb|EGK23427.1| electron transport complex, RnfABCDGE type, B subunit [Shigella
           flexneri K-218]
 gi|333017979|gb|EGK37284.1| electron transport complex, RnfABCDGE type, B subunit [Shigella
           flexneri K-304]
          Length = 192

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 26/76 (34%), Gaps = 10/76 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   +           V + +    C  C LC + CP   I
Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RVMHTVMSDLCTGCNLCVDPCPTHCI 162

Query: 119 VEGPNFEFATETRQEL 134
              P  E     + +L
Sbjct: 163 SLQPVAETPDSWKWDL 178



 Score = 35.5 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C  C +ACPVDAI
Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132


>gi|89092706|ref|ZP_01165659.1| electron transport complex protein RnfB [Oceanospirillum sp. MED92]
 gi|89083218|gb|EAR62437.1| electron transport complex protein RnfB [Oceanospirillum sp. MED92]
          Length = 198

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 28/85 (32%), Gaps = 10/85 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E          E   +     E+ CI C  C   CP  AI   +             + +
Sbjct: 91  EAIPLEGGVEEEPVKKVAYIREDECIGCTKCIQACPVDAILGAAKQ----------MHTV 140

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPN 123
              +C  C LC E CPVD I   P 
Sbjct: 141 IETECTGCDLCVEPCPVDCIDMLPI 165


>gi|221199573|ref|ZP_03572617.1| electron transport complex, rnfaBcdge type, b subunit [Burkholderia
           multivorans CGD2M]
 gi|221205527|ref|ZP_03578542.1| electron transport complex, rnfaBcdge type, b subunit [Burkholderia
           multivorans CGD2]
 gi|221174365|gb|EEE06797.1| electron transport complex, rnfaBcdge type, b subunit [Burkholderia
           multivorans CGD2]
 gi|221180858|gb|EEE13261.1| electron transport complex, rnfaBcdge type, b subunit [Burkholderia
           multivorans CGD2M]
          Length = 288

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 22/66 (33%), Gaps = 10/66 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C LC   CP  AI                 + I    C  C LC   CPVD
Sbjct: 81  FIDENLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVASLCTGCDLCVPPCPVD 130

Query: 117 AIVEGP 122
            I   P
Sbjct: 131 CIAMVP 136


>gi|26250358|ref|NP_756398.1| putative pyruvate formate-lyase 3 activating enzyme [Escherichia
           coli CFT073]
 gi|26110788|gb|AAN82972.1|AE016769_87 Putative pyruvate formate-lyase 3 activating enzyme [Escherichia
           coli CFT073]
          Length = 305

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 28/77 (36%), Gaps = 15/77 (19%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103
               R    L    N    CI C  C   CP QA++  +             + I+  +C
Sbjct: 45  PESQRHSPELLFKKND---CIRCGKCIDACPQQALSTTNA------------WFINRDRC 89

Query: 104 IYCGLCQEACPVDAIVE 120
           I CG C E CP  A+  
Sbjct: 90  IQCGKCTEICPTRALEM 106


>gi|254242172|ref|ZP_04935494.1| hypothetical protein PA2G_02903 [Pseudomonas aeruginosa 2192]
 gi|126195550|gb|EAZ59613.1| hypothetical protein PA2G_02903 [Pseudomonas aeruginosa 2192]
          Length = 774

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 10/97 (10%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            CI C  C  +CP   +  +       G         ++  CI CG C   CP  +I   
Sbjct: 368 PCIRCGDCAQVCPVS-LLPQQLHFFALGDEHEQLLAHNLFDCIECGACAYVCP-SSIPLV 425

Query: 122 PNFEFAT-ETRQELYYDKERLL---NNGDRWESEIVR 154
             +  +  E R++    +++LL    + +R+E    R
Sbjct: 426 QYYRASKAEIREQ----RQKLLKAEQSRERFEQRQAR 458



 Score = 37.0 bits (84), Expect = 0.99,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 17/54 (31%)

Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNI 156
           CI CG C + CPV  + +  +F                    GD  E  +  N+
Sbjct: 369 CIRCGDCAQVCPVSLLPQQLHF-----------------FALGDEHEQLLAHNL 405


>gi|320538846|ref|ZP_08038522.1| putative iron-sulfur protein [Serratia symbiotica str. Tucson]
 gi|320031006|gb|EFW13009.1| putative iron-sulfur protein [Serratia symbiotica str. Tucson]
          Length = 190

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 25/85 (29%), Gaps = 10/85 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E          E   +     E  CI C  C   CP  AI   +G            + +
Sbjct: 91  EPQPLGSEIAAEPVRQVAYIDEANCIGCTKCIQACPVDAIVGATG----------AMHTV 140

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPN 123
               C  C LC   CP D I   P 
Sbjct: 141 IADLCTGCDLCVAPCPTDCIEMRPI 165


>gi|291528206|emb|CBK93792.1| Iron only hydrogenase large subunit, C-terminal domain [Eubacterium
           rectale M104/1]
          Length = 507

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 6/66 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQEA 112
            +E+CI C  C ++C   AI ++  P                + +ID  KC+ CG C   
Sbjct: 150 DQEKCIKCGRCASVCSYNAIIVQERPCAKACGMDAISSDENGKANIDYDKCVSCGQCLVN 209

Query: 113 CPVDAI 118
           CP  AI
Sbjct: 210 CPFGAI 215



 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 20/63 (31%), Gaps = 7/63 (11%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-------IDMIKCIYCGLCQEACPV 115
           C AC               + P      +  V  D       ID  KCI CG C   C  
Sbjct: 107 CNACPEKRVHVTDGCQGCLAHPCMEVCPKDAVSLDRTTGKSVIDQEKCIKCGRCASVCSY 166

Query: 116 DAI 118
           +AI
Sbjct: 167 NAI 169


>gi|291525181|emb|CBK90768.1| Iron only hydrogenase large subunit, C-terminal domain [Eubacterium
           rectale DSM 17629]
          Length = 507

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 6/66 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQEA 112
            +E+CI C  C ++C   AI ++  P                + +ID  KC+ CG C   
Sbjct: 150 DQEKCIKCGRCASVCSYNAIIVQERPCAKACGMDAISSDENGKANIDYDKCVSCGQCLVN 209

Query: 113 CPVDAI 118
           CP  AI
Sbjct: 210 CPFGAI 215



 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 11/58 (18%)

Query: 63  CIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C    C  +CP  AI+++         R T +  ID  KCI CG C   C  +AI
Sbjct: 121 CQGCLAHPCMEVCPKDAISLD---------RTTGKSVIDQEKCIKCGRCASVCSYNAI 169


>gi|237748027|ref|ZP_04578507.1| rnfC protein [Oxalobacter formigenes OXCC13]
 gi|229379389|gb|EEO29480.1| rnfC protein [Oxalobacter formigenes OXCC13]
          Length = 426

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 1/91 (1%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
             +    G     R     E CI C  C   CP + + ++       G    ++   D+ 
Sbjct: 333 PVTKGTNGVLVFERQTVDRENCIGCGRCIDACPMRLMPLKYAEGWRLGNLVMMK-RHDLN 391

Query: 102 KCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
            C+ CG C+  CP +  +    F      R+
Sbjct: 392 LCVECGACESVCPSNVPLMASIFSGKARLRE 422


>gi|217979112|ref|YP_002363259.1| putative glutamate synthase (NADPH) small subunit [Methylocella
           silvestris BL2]
 gi|217504488|gb|ACK51897.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methylocella
           silvestris BL2]
          Length = 552

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
                RC++C  C       A   E            +RY  D  +C  C +C E CP  
Sbjct: 479 RYEARRCLSCGNCFECDQCYAACPEQAIVKLGPG---LRYRYDFDRCTGCAVCYEQCPCH 535

Query: 117 AIVEGPN 123
           AI   P 
Sbjct: 536 AIEMIPE 542


>gi|192362376|ref|YP_001981502.1| electron transport complex protein RnfC [Cellvibrio japonicus
           Ueda107]
 gi|190688541|gb|ACE86219.1| Electron transport complex protein RnfC [Cellvibrio japonicus
           Ueda107]
          Length = 786

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 6/96 (6%)

Query: 61  ERCIACKLCEAICPAQAITIE--SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + CI C LC   CP   +  +     +  D  R       ++  CI CG C   CP  +I
Sbjct: 379 QACIRCGLCAEACPVDLLPQQLFWYAQAEDFERLESH---NLFDCIECGACAYVCP-SSI 434

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESEIVR 154
                +  A  +      +KE+   +  R+E    R
Sbjct: 435 PLVQYYRAAKGSIHLQELEKEKSDRSRQRFEFRKAR 470


>gi|183983396|ref|YP_001851687.1| NADH-dependent glutamate synthase (small subunit) GltD
           [Mycobacterium marinum M]
 gi|183176722|gb|ACC41832.1| NADH-dependent glutamate synthase (small subunit) GltD
           [Mycobacterium marinum M]
          Length = 561

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 30/86 (34%), Gaps = 5/86 (5%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTV 94
            P ++ S      G  +         RC++C  C        A   ++  +   G R   
Sbjct: 475 SPEDRISGFDEVMGGLSAEAATFEAGRCLSCGNCFECDGCLGACPEDAVIKLGRGHRYRF 534

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVE 120
            YD    +C  C  C + CPV AI  
Sbjct: 535 DYD----RCTGCATCYDQCPVHAIEM 556


>gi|89092705|ref|ZP_01165658.1| electron transport complex protein RnfC [Oceanospirillum sp. MED92]
 gi|89083217|gb|EAR62436.1| electron transport complex protein RnfC [Oceanospirillum sp. MED92]
          Length = 1047

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 3/74 (4%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             CI C +CE +CPA+ +  +       G         ++  CI CG C   CP   I  
Sbjct: 369 NPCIRCGMCEQVCPAE-LLPQQLHWFAKGKEFEKAKHHNLFDCIECGACSYVCP-SNIPL 426

Query: 121 GPNFEFA-TETRQE 133
              + FA +E R E
Sbjct: 427 VQYYRFAKSEIRAE 440


>gi|304383331|ref|ZP_07365797.1| pyruvate:ferredoxin oxidoreductase [Prevotella marshii DSM 16973]
 gi|304335499|gb|EFM01763.1| pyruvate:ferredoxin oxidoreductase [Prevotella marshii DSM 16973]
          Length = 1190

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 49/144 (34%), Gaps = 31/144 (21%)

Query: 28  FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH 87
           F    T++  ++ G+ +   RG  A        + CI C  C  +CP   I         
Sbjct: 657 FVKYGTVDGTWQTGTAAYEKRGVEAFAPEWM-ADNCIQCNKCSYVCPHACIRPFVLDEEE 715

Query: 88  DGTRR---------------TVRYDIDMIKCIYCGLCQEACPVD----AIVEGPNFEFAT 128
            G  +                 R  + ++ C+ CG C + CP +    A+   P   FA 
Sbjct: 716 YGKFKGETLEMKAPKQLKGMHFRIQVSVMDCVGCGNCADVCPGNKNGKALEMKP---FAG 772

Query: 129 ETRQELYYD--------KERLLNN 144
              +   +D        K+ L++ 
Sbjct: 773 YNEEADRWDYLIKNVKSKQDLVDI 796


>gi|297156136|gb|ADI05848.1| NADH dehydrogenase I chain G [Streptomyces bingchenggensis BCW-1]
          Length = 286

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 4/75 (5%)

Query: 56  YPNGEERCIACKLCEAIC--PAQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQE 111
           Y    ++CI C  C   C    Q     +        R +   D  +    C+YCG C E
Sbjct: 145 YVRDYDKCILCYKCVDACGEQWQNTFAIAVAGRGFDARISTEQDAPLTDSACVYCGNCIE 204

Query: 112 ACPVDAIVEGPNFEF 126
            CP  A+     F+ 
Sbjct: 205 VCPTGALSFKSEFDM 219


>gi|217419601|ref|ZP_03451107.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           pseudomallei 576]
 gi|217396905|gb|EEC36921.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           pseudomallei 576]
          Length = 290

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 26/81 (32%), Gaps = 10/81 (12%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
             +     E A       E+ CI C LC   CP  AI                 + I   
Sbjct: 66  PLNQAHGVERARPVAFIDEQLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVAE 115

Query: 102 KCIYCGLCQEACPVDAIVEGP 122
            C  C LC   CPVD I   P
Sbjct: 116 LCTGCDLCVPPCPVDCIAMIP 136


>gi|150021055|ref|YP_001306409.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429]
 gi|149793576|gb|ABR31024.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429]
          Length = 602

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 10/66 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L  Y    E+C+ C  C  +CPA  I+ E              ++ID   C+ CG C E 
Sbjct: 539 LISYVIDPEKCVGCTACARVCPASCISGE----------VRKVHEIDQSACVKCGSCIEV 588

Query: 113 CPVDAI 118
           C   AI
Sbjct: 589 CRFGAI 594



 Score = 40.9 bits (94), Expect = 0.069,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 16/40 (40%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++ G       +  + Y ID  KC+ C  C   CP   I
Sbjct: 525 HVKEGKCPAKKCKDLISYVIDPEKCVGCTACARVCPASCI 564


>gi|11498837|ref|NP_070066.1| heterodisulfide reductase, subunit A/methylviologen reducing
           hydrogenase, subunit delta [Archaeoglobus fulgidus DSM
           4304]
 gi|2649346|gb|AAB90008.1| heterodisulfide reductase, subunit A/methylviologen reducing
           hydrogenase, subunit delta [Archaeoglobus fulgidus DSM
           4304]
          Length = 769

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 12/65 (18%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              EE+CI C++CE +C   A+T++   +            I+   C  CG+C  ACP D
Sbjct: 570 YVDEEKCIGCRICEKVCEFNAVTVDRKAK------------INPNACAMCGICVAACPAD 617

Query: 117 AIVEG 121
           AI  G
Sbjct: 618 AIDMG 622



 Score = 35.1 bits (79), Expect = 3.0,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 27/88 (30%), Gaps = 8/88 (9%)

Query: 46  RFRGEHALRRYPNGEERCIAC-KLCEAICPAQAITIESGPRCHDGTRRTVRYD------- 97
            FR +         E +C  C   C ++CP +                            
Sbjct: 226 NFRIKVIKHPRYVDESKCKGCIDDCSSVCPVEIPNEFDYGIGVRKAIYIPIPQSTPLYAA 285

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           ID   CI C LC++AC   A+      E
Sbjct: 286 IDWEHCIGCRLCEKACQPKAVDFSQQPE 313


>gi|24374054|ref|NP_718097.1| electron transport complex protein RnfC [Shewanella oneidensis
           MR-1]
 gi|24348529|gb|AAN55541.1|AE015693_3 iron-sulfur cluster-binding protein [Shewanella oneidensis MR-1]
          Length = 790

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 43/126 (34%), Gaps = 11/126 (8%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
           TI  P  KG+          +   P   + CI C  C       A      P+      +
Sbjct: 350 TIQVPILKGTNCILVPSSQEIGTTPEE-KACIRCGECA-----NACPALLLPQQLFWHAK 403

Query: 93  TVRYD----IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRW 148
              YD     ++  CI CG C   CP   I     +  A    ++   +K++      R+
Sbjct: 404 AEEYDKAASYNLKDCIECGCCSYVCP-SDIPLVEYYRIAKSALKQTADEKQQAERAKLRF 462

Query: 149 ESEIVR 154
           E+ + R
Sbjct: 463 EARLQR 468


>gi|53718739|ref|YP_107725.1| ferredoxin [Burkholderia pseudomallei K96243]
 gi|134281040|ref|ZP_01767749.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           pseudomallei 305]
 gi|237811474|ref|YP_002895925.1| electron transport complex, rnfaBcdge type, b subunit [Burkholderia
           pseudomallei MSHR346]
 gi|52209153|emb|CAH35097.1| putative electron transport-related protein [Burkholderia
           pseudomallei K96243]
 gi|134247346|gb|EBA47431.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           pseudomallei 305]
 gi|237505183|gb|ACQ97501.1| electron transport complex, rnfaBcdge type, b subunit [Burkholderia
           pseudomallei MSHR346]
          Length = 290

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 26/81 (32%), Gaps = 10/81 (12%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
             +     E A       E+ CI C LC   CP  AI                 + I   
Sbjct: 66  PLNQAHGVERARPVAFIDEQLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVAE 115

Query: 102 KCIYCGLCQEACPVDAIVEGP 122
            C  C LC   CPVD I   P
Sbjct: 116 LCTGCDLCVPPCPVDCIAMIP 136


>gi|254298437|ref|ZP_04965889.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           pseudomallei 406e]
 gi|157808125|gb|EDO85295.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           pseudomallei 406e]
          Length = 281

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 26/81 (32%), Gaps = 10/81 (12%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
             +     E A       E+ CI C LC   CP  AI                 + I   
Sbjct: 66  PLNQAHGVERARPVAFIDEQLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVAE 115

Query: 102 KCIYCGLCQEACPVDAIVEGP 122
            C  C LC   CPVD I   P
Sbjct: 116 LCTGCDLCVPPCPVDCIAMIP 136


>gi|327400962|ref|YP_004341801.1| methyl-viologen-reducing hydrogenase subunit delta [Archaeoglobus
           veneficus SNP6]
 gi|327316470|gb|AEA47086.1| methyl-viologen-reducing hydrogenase delta subunit [Archaeoglobus
           veneficus SNP6]
          Length = 753

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 9/61 (14%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E CI C+LC  +C   A+ I+          R+ +  ID   C  CG C  ACPVDAI  
Sbjct: 556 ENCIGCRLCAEVCRFNAVVIDE---------RSGKAKIDANACAMCGACVAACPVDAIDM 606

Query: 121 G 121
           G
Sbjct: 607 G 607



 Score = 35.5 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 22/79 (27%), Gaps = 7/79 (8%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-------IDMI 101
           G   LR   +       CK C   C +                             ID  
Sbjct: 222 GNFKLRIVKHPRYVNENCKGCIEDCSSVCPVDVFDGVGIRKAVYIPFPQATPLYAAIDWE 281

Query: 102 KCIYCGLCQEACPVDAIVE 120
            CI C LC +AC  +AI  
Sbjct: 282 NCIRCELCVKACKPNAIDF 300


>gi|312880859|ref|ZP_07740659.1| Cobyrinic acid ac-diamide synthase [Aminomonas paucivorans DSM
           12260]
 gi|310784150|gb|EFQ24548.1| Cobyrinic acid ac-diamide synthase [Aminomonas paucivorans DSM
           12260]
          Length = 291

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 34/99 (34%), Gaps = 24/99 (24%)

Query: 24  LRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG 83
           LR     ++T  +PF   S +               E+RC  C  C  +C   A+  E G
Sbjct: 44  LRILLDPQSTEEWPFVGKSVAVL------------DEKRCTRCGACRDLCRFDALPWEEG 91

Query: 84  PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           PR                +C  C LC   CP +A    P
Sbjct: 92  PRVD------------ATRCEGCALCHHVCPQEAFSLVP 118


>gi|269216907|ref|ZP_06160761.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Slackia exigua
           ATCC 700122]
 gi|269129714|gb|EEZ60798.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Slackia exigua
           ATCC 700122]
          Length = 1275

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 20/116 (17%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ--------------AITIESG 83
           FE G+ +   RG        +    C  C +C  +CP                A    + 
Sbjct: 765 FETGAAAYEKRGVAVNVPTWD-ASTCTQCNMCSYVCPHATIRPFLLTDEEADAAPDTVTA 823

Query: 84  PRCHDGTRRTVRYD--IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
                G  R ++Y   +  + C+ C +C   CP +++   P    A ET ++  +D
Sbjct: 824 IDAKGGKMRGMKYTLVVSPLDCMGCEVCVHQCPTNSLSMSPI---AVETPKQNAFD 876


>gi|261494021|ref|ZP_05990524.1| electron transport complex protein RnfB [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261496220|ref|ZP_05992626.1| electron transport complex protein RnfB [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261308172|gb|EEY09469.1| electron transport complex protein RnfB [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261310187|gb|EEY11387.1| electron transport complex protein RnfB [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 205

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 25/81 (30%), Gaps = 10/81 (12%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                  E  ++     E+ CI C  C   CP  AI   +             + I    
Sbjct: 96  PPMEGMVEPEMKVAFVIEDLCIGCTKCIQACPVDAIIGTNK----------AMHTIIPDL 145

Query: 103 CIYCGLCQEACPVDAIVEGPN 123
           C  C LC   CP + I   P 
Sbjct: 146 CTGCELCVAPCPTNCIEMRPI 166


>gi|154414441|ref|XP_001580248.1| 4Fe-4S binding domain containing protein [Trichomonas vaginalis G3]
 gi|121914463|gb|EAY19262.1| 4Fe-4S binding domain containing protein [Trichomonas vaginalis G3]
          Length = 658

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 10/90 (11%)

Query: 31  KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT 90
           K   ++  E  +      GE  L  +      CI C  C  +CP  AIT+          
Sbjct: 563 KNIRDWAKENANFDIENIGEEPLINHLVNPYTCIGCGRC-TMCPNDAITLIPAK------ 615

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
                Y +D  KC  CGLC+  CP ++   
Sbjct: 616 ---WVYKVDPDKCNGCGLCESVCPTNSCGL 642


>gi|56478215|ref|YP_159804.1| electron transport complex protein RnfB [Aromatoleum aromaticum
           EbN1]
 gi|81677376|sp|Q5P1B1|RNFB_AZOSE RecName: Full=Electron transport complex protein rnfB
 gi|56314258|emb|CAI08903.1| Electron transport complex protein [Aromatoleum aromaticum EbN1]
          Length = 183

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 28/87 (32%), Gaps = 10/87 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E    S     E         E+ CI C LC   CP  AI   +             + +
Sbjct: 89  EFKPLSEEHGEEKPKSVARIDEQLCIGCTLCIQACPVDAIVGAAK----------HMHTV 138

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFE 125
               C  C LC   CPVD I   P  E
Sbjct: 139 VPALCTGCELCVAPCPVDCIAMTPLPE 165


>gi|33112419|sp|Q968X7|PNO_CRYPV RecName: Full=Pyruvate dehydrogenase [NADP+]; AltName: Full=CpPNO;
           AltName: Full=Pyruvate:NADP+ oxidoreductase
 gi|13897519|gb|AAK48421.1|AF208233_1 pyruvate:ferredoxin oxidoreductase/NADPH-cytochrome P450 reductase
           [Cryptosporidium parvum]
          Length = 1934

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 37/111 (33%), Gaps = 22/111 (19%)

Query: 27  FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA--------- 77
            F+   T+      G+T+   RG  A+        +C  C  C  +CP  A         
Sbjct: 688 MFEPTGTVPL----GTTAYEKRG-IAMSIPIVDMNKCTQCNYCSIVCPHAAIRPFLLDEA 742

Query: 78  --------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
                   + I       + +    R  +  + C  C LC  ACP DA+  
Sbjct: 743 EFKNAPETMHIPKAKGGQEFSSYYYRIQVTPLDCTGCELCVHACPDDALHM 793


>gi|330949992|gb|EGH50252.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas
           syringae Cit 7]
          Length = 291

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 28/75 (37%), Gaps = 10/75 (13%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           RG    +     E  CI C  C   CP  AI   S           + + + + +C  C 
Sbjct: 76  RGTAPAQVAFIREAECIGCTKCIQACPVDAILGASK----------LMHTVIIDECTGCD 125

Query: 108 LCQEACPVDAIVEGP 122
           LC   CPVD I   P
Sbjct: 126 LCVAPCPVDCIEMHP 140


>gi|331001648|ref|ZP_08325171.1| hypothetical protein HMPREF0491_00033 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330413369|gb|EGG92736.1| hypothetical protein HMPREF0491_00033 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 507

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 6/66 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQEA 112
            +E+CI C  C  +C   AI +++ P                + DID  KC+ CG C   
Sbjct: 150 NQEKCIKCGRCANVCAYNAIIVQTRPCAASCGMDAISSDENGKADIDYDKCVSCGQCLVN 209

Query: 113 CPVDAI 118
           CP  AI
Sbjct: 210 CPFGAI 215



 Score = 38.2 bits (87), Expect = 0.40,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 26/89 (29%), Gaps = 9/89 (10%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
              T   P           G    R Y     +      C  +CP  A+ I+        
Sbjct: 90  KAETYYTPPLINIIKFACHGCVEKRVYVTDGCQGCLAHPCSEVCPTGAVKIDKESGFSS- 148

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                   I+  KCI CG C   C  +AI
Sbjct: 149 --------INQEKCIKCGRCANVCAYNAI 169


>gi|307729066|ref|YP_003906290.1| electron transport complex, RnfABCDGE type subunit B [Burkholderia
           sp. CCGE1003]
 gi|307583601|gb|ADN56999.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           sp. CCGE1003]
          Length = 321

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 23/64 (35%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ CI C LC   CP  AI                 + +    C  C LC   CPVD I
Sbjct: 85  DEQICIGCTLCMQACPVDAIVGAPK----------HMHTVVAELCTGCDLCVPPCPVDCI 134

Query: 119 VEGP 122
              P
Sbjct: 135 SMLP 138



 Score = 38.2 bits (87), Expect = 0.38,   Method: Composition-based stats.
 Identities = 16/31 (51%), Positives = 17/31 (54%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
           ID   CI C LC +ACPVDAIV  P      
Sbjct: 84  IDEQICIGCTLCMQACPVDAIVGAPKHMHTV 114


>gi|317154615|ref|YP_004122663.1| nitroreductase [Desulfovibrio aespoeensis Aspo-2]
 gi|316944866|gb|ADU63917.1| nitroreductase [Desulfovibrio aespoeensis Aspo-2]
          Length = 272

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 7/68 (10%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +  +    E C    LC ++CPA  I  + G       ++          CI CG C   
Sbjct: 1   MTLFTVNAETCARDGLCASVCPAGCIDWQPGELPVPHEKKF-------AYCIGCGHCVAV 53

Query: 113 CPVDAIVE 120
           CP  A+  
Sbjct: 54  CPHGALHL 61


>gi|251778159|ref|ZP_04821079.1| nitroreductase family protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
 gi|243082474|gb|EES48364.1| nitroreductase family protein [Clostridium botulinum E1 str. 'BoNT
           E Beluga']
          Length = 273

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 16/103 (15%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            +   +E+CI+CK C   CP   I +  G             +I    CI CG C   CP
Sbjct: 1   MFEVNKEKCISCKQCINDCPVSDILLIEGKA-----------NIKNESCIKCGHCIAICP 49

Query: 115 VDAIVEGPNF---EFATETRQELYYDKERLLNNGDRWESEIVR 154
             A+    ++   E     + E   + + LL N  ++   + +
Sbjct: 50  TKAVS-TDDYNMDEVKEYNKSEFSIEADNLL-NFIKFRRSVRK 90


>gi|297587236|ref|ZP_06945881.1| NADH dehydrogenase (quinone) [Finegoldia magna ATCC 53516]
 gi|297575217|gb|EFH93936.1| NADH dehydrogenase (quinone) [Finegoldia magna ATCC 53516]
          Length = 626

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 16/96 (16%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            L+Y F+ +   +   +K           AL  Y    ++CI C  C   CP   I  E 
Sbjct: 544 TLKY-FRNEYEAHIYDKKCPAHAC----KALLSYEI-TDKCIGCTKCAKNCPVSCIEGEV 597

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +          + ID  +CI CG C+  CPV A+
Sbjct: 598 KKQ----------HVIDKSQCIKCGNCETVCPVHAV 623


>gi|258404574|ref|YP_003197316.1| Cobyrinic acid ac-diamide synthase [Desulfohalobium retbaense DSM
           5692]
 gi|257796801|gb|ACV67738.1| Cobyrinic acid ac-diamide synthase [Desulfohalobium retbaense DSM
           5692]
          Length = 285

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 14/64 (21%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++C  C +C + C   AI+ +                I + +C  C LC   CP  AI
Sbjct: 64  DPQKCTECGVCASSCRFGAISEDIE--------------IRLEQCEGCALCSYVCPETAI 109

Query: 119 VEGP 122
              P
Sbjct: 110 SMHP 113


>gi|169351160|ref|ZP_02868098.1| hypothetical protein CLOSPI_01939 [Clostridium spiroforme DSM 1552]
 gi|169292222|gb|EDS74355.1| hypothetical protein CLOSPI_01939 [Clostridium spiroforme DSM 1552]
          Length = 770

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 10/87 (11%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           +      ++C  C  C  ICP Q I+++            +   ID  KCI+CG CQ  C
Sbjct: 392 KFNICDYDQCTGCGACSVICPKQCISMKKNDEG------FLYPVIDYHKCIHCGNCQRKC 445

Query: 114 PVDAIVEGPNFEFATETRQELYYDKER 140
           PV    +  N E  T        +K+ 
Sbjct: 446 PVKNKYKEDNKEPETYA----CMNKDD 468


>gi|297619238|ref|YP_003707343.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus voltae A3]
 gi|297378215|gb|ADI36370.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           voltae A3]
          Length = 343

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 27/80 (33%), Gaps = 5/80 (6%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                +G +         + C  C +CE ICP   I I          R      I   K
Sbjct: 242 YPFWKKGLYKFDEKFKISKDCNLCGICEKICPVNNIEIIDNENLEYNDRI-----IFKHK 296

Query: 103 CIYCGLCQEACPVDAIVEGP 122
           C  C  C + CPV AI  G 
Sbjct: 297 CQECLSCIQTCPVRAISYGN 316



 Score = 34.7 bits (78), Expect = 4.1,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 17/48 (35%)

Query: 84  PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           P    G  +          C  CG+C++ CPV+ I    N       R
Sbjct: 243 PFWKKGLYKFDEKFKISKDCNLCGICEKICPVNNIEIIDNENLEYNDR 290


>gi|152995572|ref|YP_001340407.1| electron transport complex protein RnfB [Marinomonas sp. MWYL1]
 gi|150836496|gb|ABR70472.1| electron transport complex, RnfABCDGE type, B subunit [Marinomonas
           sp. MWYL1]
          Length = 198

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 28/82 (34%), Gaps = 10/82 (12%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E          E A R     E+ CI C  C   CP  AI   +             + +
Sbjct: 91  EAVPLDGDHGTESAKRVAVIREDECIGCTKCIQACPVDAILGAAKQ----------MHTV 140

Query: 99  DMIKCIYCGLCQEACPVDAIVE 120
              +C  C LC E CPVD I  
Sbjct: 141 IADECTGCDLCVEPCPVDCIDM 162


>gi|37526279|ref|NP_929623.1| electron transport complex protein RnfB [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36785710|emb|CAE14694.1| Electron transport complex protein RnfB [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 210

 Score = 50.1 bits (118), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 28/85 (32%), Gaps = 10/85 (11%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
             A +     EE CI C  C   CP  AI   +             + I    C  C LC
Sbjct: 104 NPARKVAFIDEENCIGCTKCIQACPVDAIVGAT----------RAMHTIVEDLCTGCDLC 153

Query: 110 QEACPVDAIVEGPNFEFATETRQEL 134
              CP D I   P     +  + +L
Sbjct: 154 VAPCPTDCITMIPVATTTSNWKWDL 178


>gi|307594911|ref|YP_003901228.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Vulcanisaeta distributa DSM 14429]
 gi|307550112|gb|ADN50177.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Vulcanisaeta distributa DSM 14429]
          Length = 616

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 12/72 (16%)

Query: 47  FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
           FRG     RY    + C AC +C  +    AI      +            ID   C+ C
Sbjct: 541 FRGYV--TRYYVDLDACKACGICYNLIACPAIVPLENRKA----------WIDPNMCVGC 588

Query: 107 GLCQEACPVDAI 118
            +C + CP +AI
Sbjct: 589 SVCAQVCPYNAI 600


>gi|284106851|ref|ZP_06386294.1| NAD-dependent formate dehydrogenase, alpha subunit [Candidatus
           Poribacteria sp. WGA-A3]
 gi|283830030|gb|EFC34306.1| NAD-dependent formate dehydrogenase, alpha subunit [Candidatus
           Poribacteria sp. WGA-A3]
          Length = 887

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 4/88 (4%)

Query: 31  KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT 90
            T   +   K     ++ G            RC++C  C   C                 
Sbjct: 124 PTVSRFKELKRVFPKQYLGPVI----ETQMNRCVSCMRCVRYCDEVMDAQALAADGRGTL 179

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +   +  + ++C  CG C + CPV AI
Sbjct: 180 TQITHWAGNELECDMCGGCIQICPVGAI 207


>gi|254563763|ref|YP_003070858.1| NAD-dependent formate dehydrogenase, molybdenum containing subunit
           alpha [Methylobacterium extorquens DM4]
 gi|254271041|emb|CAX27048.1| NAD-dependent formate dehydrogenase, molybdenum containing, alpha
           subunit [Methylobacterium extorquens DM4]
          Length = 950

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 2/98 (2%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVR 95
             K ++      + +   +     +CI C  C   C        +    R  D       
Sbjct: 148 HVKPASDRYLPKDESNPYFTYDPSKCIVCNRCVRACEETQGTFALTIEGRGFDSRVAAGP 207

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
            +    +C+ CG C +ACP   + E    ++      E
Sbjct: 208 TNFMQSECVSCGACVQACPTATLQEKTIHQYGQPDHSE 245


>gi|229543244|ref|ZP_04432304.1| formate dehydrogenase, alpha subunit [Bacillus coagulans 36D1]
 gi|229327664|gb|EEN93339.1| formate dehydrogenase, alpha subunit [Bacillus coagulans 36D1]
          Length = 997

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 32/92 (34%), Gaps = 9/92 (9%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA----QAITIESGPRCHD 88
              Y FE     P      +   Y    ++CI C  C   C      + +TI+       
Sbjct: 123 HQKYQFEAKPYPPD----QSHPFYRYEPDQCILCGRCVEACQDLQVNETLTIDWDREVPR 178

Query: 89  GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
                    ID   C+ CG C   CP +A++E
Sbjct: 179 VIWDNDVP-IDESSCVSCGHCVTVCPCNALME 209



 Score = 40.1 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 35/101 (34%), Gaps = 13/101 (12%)

Query: 26  YFFKAKTTINYP---FEKGSTSPRFRGEHAL-RRYPNGEERCIAC----KLCEAICPAQA 77
              +A  T   P    E GS   +     A+ R   N E  C  C      C     A+ 
Sbjct: 59  NLVRACATKVEPGMEVESGSKPVKDAQYEAMSRILKNHELYCTVCDNNNGNCVVHNTAEH 118

Query: 78  ITIESGP-----RCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           + IE        + +   +    Y  +  +CI CG C EAC
Sbjct: 119 LEIEHQKYQFEAKPYPPDQSHPFYRYEPDQCILCGRCVEAC 159


>gi|150388601|ref|YP_001318650.1| electron transfer flavoprotein, alpha subunit-like protein
           [Alkaliphilus metalliredigens QYMF]
 gi|149948463|gb|ABR46991.1| Electron transfer flavoprotein, alpha subunit-like protein
           [Alkaliphilus metalliredigens QYMF]
          Length = 392

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 12/71 (16%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           + +     E+C  C LC   C   A+  E+               +    C  CG+C ++
Sbjct: 1   MSQLTINLEKCTGCGLCIKSCATDALHKENNKA------------MVNENCTLCGICIDS 48

Query: 113 CPVDAIVEGPN 123
           CP +AI     
Sbjct: 49  CPFEAISIEKE 59



 Score = 38.2 bits (87), Expect = 0.36,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
            I++ KC  CGLC ++C  DA+ +  N     E 
Sbjct: 5   TINLEKCTGCGLCIKSCATDALHKENNKAMVNEN 38


>gi|197302758|ref|ZP_03167811.1| hypothetical protein RUMLAC_01487 [Ruminococcus lactaris ATCC
           29176]
 gi|197298156|gb|EDY32703.1| hypothetical protein RUMLAC_01487 [Ruminococcus lactaris ATCC
           29176]
          Length = 1188

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 26/84 (30%), Gaps = 14/84 (16%)

Query: 58  NGEERCIACKLCEAICPAQ-----AITIESGPRCHDGTR---------RTVRYDIDMIKC 103
               +CI C  C  +CP       A+T E   +  +G +               +    C
Sbjct: 689 WDPSKCIQCNRCAYVCPHAVIRPVALTEEEAAQAPEGIKTLGMIGMPDMKFTMTVSAYDC 748

Query: 104 IYCGLCQEACPVDAIVEGPNFEFA 127
             CG C   CP     E    E A
Sbjct: 749 TGCGSCVNVCPGKKNKETGEVEKA 772


>gi|126179133|ref|YP_001047098.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanoculleus marisnigri JR1]
 gi|125861927|gb|ABN57116.1| formylmethanofuran dehydrogenase, subunit G [Methanoculleus
           marisnigri JR1]
          Length = 202

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/134 (23%), Positives = 42/134 (31%), Gaps = 24/134 (17%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           MR F   V      E++       ++FF              T   F+G          E
Sbjct: 1   MRSFVYYVREFLRPEWIR------KFFFARTA-------PLETPSYFKGYP-----TRTE 42

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C  C  C  ICPA       G       +     ++    CI CGLC EACP   +  
Sbjct: 43  KECTGCFTCMMICPA------PGAIAVLRKKDEWEPEVYPGHCIRCGLCVEACPEGVLSS 96

Query: 121 GPNFEFATETRQEL 134
           G   +     R   
Sbjct: 97  GRILDVTRRDRTAF 110



 Score = 34.3 bits (77), Expect = 5.5,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 22/74 (29%), Gaps = 8/74 (10%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQ-------AITIESGPRCHDGTRRTVRYDI-DMIKCI 104
                  +  C+ C  C   CP         A +  S            R  I  M KC 
Sbjct: 113 WYHLEVDDTLCMRCGNCCVSCPVNREIDPQLAGSGTSASDEVIMRIEGGRVRILHMEKCT 172

Query: 105 YCGLCQEACPVDAI 118
            C  C+  CP  AI
Sbjct: 173 GCTTCETQCPNRAI 186


>gi|323169186|gb|EFZ54862.1| electron transport complex, RnfABCDGE type, B subunit [Shigella
           sonnei 53G]
          Length = 192

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   +             + +    C  C LC + CP   I
Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTHCI 162

Query: 119 VEGPNFEFATETRQEL 134
              P  E     + +L
Sbjct: 163 SLQPVAETPDSWKWDL 178



 Score = 35.5 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C  C +ACPVDAI
Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132


>gi|295112090|emb|CBL28840.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Synergistetes bacterium SGP1]
          Length = 628

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 37/98 (37%), Gaps = 15/98 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            LRY F+ +   +   ++            ++R+     +C  C  C   CP  AI+   
Sbjct: 544 TLRY-FRDEYEAHVSEKRCPAKVC----QKMKRFEIDAAQCRGCTKCARSCPVGAISGV- 597

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
                        + ID  KCI CG C E CP  AI E
Sbjct: 598 ---------VKAPHLIDDGKCIRCGACMENCPFGAIRE 626


>gi|225166802|ref|YP_002650787.1| putative dihydroorotate dehydrogenase family protein [Clostridium
           botulinum]
 gi|253771334|ref|YP_003034159.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum
           D str. 1873]
 gi|225007466|dbj|BAH29562.1| putative dihydroorotate dehydrogenase family protein [Clostridium
           botulinum]
 gi|253721311|gb|ACT33604.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum
           D str. 1873]
          Length = 362

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 14/82 (17%)

Query: 39  EKGSTSPRFRGEHALRRYP--NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           E+   +   +G+           E++CI C +CE +CP  A+ ++               
Sbjct: 287 EEVKNTKLEKGDIKFNPDNPVIDEDKCIKCGVCERVCPYFALKLKEKINVD--------- 337

Query: 97  DIDMIKCIYCGLCQEACPVDAI 118
                KC  CGLC+  CPVDAI
Sbjct: 338 ---TTKCFGCGLCESKCPVDAI 356



 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVE 120
           ID  KCI CG+C+  CP  A+  
Sbjct: 308 IDEDKCIKCGVCERVCPYFALKL 330


>gi|218561250|ref|YP_002394163.1| pyruvate formate-lyase 3-activating enzyme [Escherichia coli S88]
 gi|218691120|ref|YP_002399332.1| putative pyruvate formate-lyase 3-activating enzyme [Escherichia
           coli ED1a]
 gi|237703757|ref|ZP_04534238.1| pyruvate-formate lyase-activating enzyme [Escherichia sp.
           3_2_53FAA]
 gi|218368019|emb|CAR05821.1| putative pyruvate formate-lyase 3-activating enzyme [Escherichia
           coli S88]
 gi|218428684|emb|CAR09615.2| putative pyruvate formate-lyase 3-activating enzyme [Escherichia
           coli ED1a]
 gi|226901669|gb|EEH87928.1| pyruvate-formate lyase-activating enzyme [Escherichia sp.
           3_2_53FAA]
 gi|323950274|gb|EGB46155.1| glycyl-radical enzyme activating protein family protein
           [Escherichia coli H252]
 gi|323955614|gb|EGB51374.1| glycyl-radical enzyme activating protein family protein
           [Escherichia coli H263]
          Length = 305

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 28/77 (36%), Gaps = 15/77 (19%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103
               R    L    N    CI C  C   CP QA++  +             + I+  +C
Sbjct: 45  PESQRHSPELLFKKND---CIRCGKCIDACPQQALSTTNA------------WFINRDRC 89

Query: 104 IYCGLCQEACPVDAIVE 120
           I CG C E CP  A+  
Sbjct: 90  IQCGKCTEICPTRALEM 106


>gi|217966854|ref|YP_002352360.1| dihydroorotate dehydrogenase [Dictyoglomus turgidum DSM 6724]
 gi|217335953|gb|ACK41746.1| dihydroorotate dehydrogenase [Dictyoglomus turgidum DSM 6724]
          Length = 390

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 12/68 (17%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L       + C +C +C+ +C   A   + G                   C  CGLC   
Sbjct: 324 LYEAYINSDLCTSCGICKKVCIYDAPIEKDGKYF------------ITDLCDGCGLCVRL 371

Query: 113 CPVDAIVE 120
           CP  AI  
Sbjct: 372 CPTKAISM 379


>gi|194437731|ref|ZP_03069826.1| pyruvate-formate lyase-activating enzyme [Escherichia coli 101-1]
 gi|194423227|gb|EDX39219.1| pyruvate-formate lyase-activating enzyme [Escherichia coli 101-1]
          Length = 305

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 28/77 (36%), Gaps = 15/77 (19%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103
               R    L    N    CI C  C   CP QA++  +             + I+  +C
Sbjct: 45  PESQRHSPELLFKKND---CIRCGKCIDACPQQALSTTNA------------WFINRDRC 89

Query: 104 IYCGLCQEACPVDAIVE 120
           I CG C E CP  A+  
Sbjct: 90  IQCGKCTEICPTRALEM 106


>gi|168183044|ref|ZP_02617708.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum Bf]
 gi|237794479|ref|YP_002862031.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum Ba4 str.
           657]
 gi|182673874|gb|EDT85835.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum Bf]
 gi|229263629|gb|ACQ54662.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum Ba4 str.
           657]
          Length = 1172

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 44/126 (34%), Gaps = 24/126 (19%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA---QAITIESGPRCHDGTRRTV--- 94
           G+TS   RG   +       ++CI C  C  ICP    +A  +    +    +R      
Sbjct: 668 GTTSYEKRGIAVMIPEWQ-IDKCIQCNQCSYICPHSVIRAYLLNKDEKEKAPSRFETKKA 726

Query: 95  ----------RYDIDMIKCIYCGLCQEACPVD--AIVEGP---NFEFATETRQ--ELYYD 137
                     R  I  + C  CG C + CP    A++        E  +E  +       
Sbjct: 727 AGKGLEELGYRIQISPLDCTGCGNCADVCPAPGKALIMKNAEEQIEMQSENWEFGLNINT 786

Query: 138 KERLLN 143
           KE L++
Sbjct: 787 KENLMD 792


>gi|121997517|ref|YP_001002304.1| RnfABCDGE type electron transport complex subunit C [Halorhodospira
           halophila SL1]
 gi|121588922|gb|ABM61502.1| electron transport complex, RnfABCDGE type, C subunit
           [Halorhodospira halophila SL1]
          Length = 681

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 10/66 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E +CI C  C   CP  AI             +   + +   +C  C LC +ACP+D
Sbjct: 104 FIDESQCIGCTRCLPACPVDAIVG----------AQRQVHTVLADECTGCRLCVDACPMD 153

Query: 117 AIVEGP 122
            I   P
Sbjct: 154 CITMQP 159



 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 3/57 (5%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTV---RYDIDMIKCIYCGLCQEACP 114
           + CI+C  C  +CP      E   R   G          D+D ++C  C  C+  CP
Sbjct: 552 QPCISCGRCAEVCPEGLQPFEMARRIRAGVDVGEAAEHIDLDPMRCTGCSSCELVCP 608



 Score = 33.5 bits (75), Expect = 9.1,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 4/29 (13%)

Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETR 131
           CI CG C E CP       P FE A   R
Sbjct: 554 CISCGRCAEVCPEG---LQP-FEMARRIR 578


>gi|242239349|ref|YP_002987530.1| electron transport complex, RnfABCDGE type, C subunit [Dickeya
           dadantii Ech703]
 gi|242131406|gb|ACS85708.1| electron transport complex, RnfABCDGE type, C subunit [Dickeya
           dadantii Ech703]
          Length = 673

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 34/106 (32%), Gaps = 13/106 (12%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C  C   CPA  +  +       G          +  CI CG C   CP   I    
Sbjct: 378 CIRCSKCADACPAG-LLPQQLYWFSRGDEHEKARQHHLFDCIECGACAYVCP-SNIPLVQ 435

Query: 123 NF-----EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            +     E      +    +K +      R+E+   R +V +   R
Sbjct: 436 YYRQEKAEIRALDVETHRANKAK-----ARYEARQAR-LVREKQAR 475


>gi|294950003|ref|XP_002786412.1| 68 kDa protein, putative [Perkinsus marinus ATCC 50983]
 gi|239900704|gb|EER18208.1| 68 kDa protein, putative [Perkinsus marinus ATCC 50983]
          Length = 614

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 1/74 (1%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
            E  LR     E+RC   K C+  C        +G  C +  R +    I    CI CG+
Sbjct: 16  EEQRLRIAIVSEDRCKP-KKCQLECKKYCPVNRTGKFCVEVDRHSKVSWISETLCIGCGI 74

Query: 109 CQEACPVDAIVEGP 122
           C + CP DAI    
Sbjct: 75  CVKKCPFDAITIIN 88


>gi|269926700|ref|YP_003323323.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Thermobaculum terrenum ATCC BAA-798]
 gi|269790360|gb|ACZ42501.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Thermobaculum terrenum ATCC BAA-798]
          Length = 984

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 36/122 (29%), Gaps = 21/122 (17%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE----ERCIACKLCEAICPAQAI 78
            L  F K    +    E+  T P F  ++    Y  G       CI C  C   C ++  
Sbjct: 716 TLEEFKKNPHFVEEYEEEHGTPPSFYPDYVYNSYKWGMAIDMNACIGCNACVIACQSENN 775

Query: 79  TIESGPRCHDGTRRTVRYDI---------------DMIKCIYCGL--CQEACPVDAIVEG 121
               G +    +R      I                 + C +C    C+  CPV A    
Sbjct: 776 IAVVGKKNVRNSREMHWLRIDTYFSGEASNPHTFYQPMMCQHCERAPCEYVCPVAATTHS 835

Query: 122 PN 123
           P 
Sbjct: 836 PE 837


>gi|163853802|ref|YP_001641845.1| formate dehydrogenase, alpha subunit [Methylobacterium extorquens
           PA1]
 gi|163665407|gb|ABY32774.1| formate dehydrogenase, alpha subunit [Methylobacterium extorquens
           PA1]
          Length = 950

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 2/98 (2%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVR 95
             K ++      + +   +     +CI C  C   C        +    R  D       
Sbjct: 148 HVKPASDRYLPKDESNPYFTYDPSKCIVCNRCVRACEETQGTFALTIEGRGFDSRVAAGP 207

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
            +    +C+ CG C +ACP   + E    ++      E
Sbjct: 208 TNFMQSECVSCGACVQACPTATLQEKTIHQYGQPDHSE 245


>gi|74318034|ref|YP_315774.1| electron transport complex protein RnfB [Thiobacillus denitrificans
           ATCC 25259]
 gi|123731760|sp|Q3SHB7|RNFB_THIDA RecName: Full=Electron transport complex protein rnfB
 gi|74057529|gb|AAZ97969.1| Electron transport complex, RnfABCDGE type, B subunit [Thiobacillus
           denitrificans ATCC 25259]
          Length = 188

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 28/87 (32%), Gaps = 10/87 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E                    E+ CI C LC   CP  AI+  +             + I
Sbjct: 89  EPKPLDEAHGTPKPKSVAFIDEQTCIGCTLCIQACPVDAISGAAKQ----------MHTI 138

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFE 125
              +C  C LC   CPVD I   P  E
Sbjct: 139 IADECTGCELCLAPCPVDCISMVPIAE 165


>gi|15802043|ref|NP_288065.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           EDL933]
 gi|17368144|sp|P58324|RNFC_ECO57 RecName: Full=Electron transport complex protein rnfC
 gi|12515618|gb|AAG56618.1|AE005386_9 putative membrane protein [Escherichia coli O157:H7 str. EDL933]
          Length = 740

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 41/112 (36%), Gaps = 13/112 (11%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            I     F     E A   ++E     +R      R+E+ + R +  +   R
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEE-----KRAAEAKARFEARLAR-LEREKAAR 474


>gi|15831592|ref|NP_310365.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. Sakai]
 gi|168763667|ref|ZP_02788674.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4501]
 gi|217328656|ref|ZP_03444737.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. TW14588]
 gi|13361805|dbj|BAB35761.1| putative membrane protein [Escherichia coli O157:H7 str. Sakai]
 gi|189366209|gb|EDU84625.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4501]
 gi|217318003|gb|EEC26430.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. TW14588]
 gi|320188315|gb|EFW62977.1| Electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC1212]
 gi|326341995|gb|EGD65776.1| Electron transport complex protein RnfC [Escherichia coli O157:H7
           str. 1044]
          Length = 772

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 41/112 (36%), Gaps = 13/112 (11%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            I     F     E A   ++E     +R      R+E+ + R +  +   R
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEE-----KRAAEAKARFEARLAR-LEREKAAR 474


>gi|329115318|ref|ZP_08244072.1| Putative oxidoreductase YeiT [Acetobacter pomorum DM001]
 gi|326695297|gb|EGE46984.1| Putative oxidoreductase YeiT [Acetobacter pomorum DM001]
          Length = 605

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 27/78 (34%), Gaps = 3/78 (3%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
                RC++C  C       A   E         +    Y + M  C  C +C E CP  
Sbjct: 518 RYEAGRCLSCGNCFECDNCYASCPEQAITRLGPGKG---YAVSMDLCTGCAVCAEQCPCH 574

Query: 117 AIVEGPNFEFATETRQEL 134
           AI   P    AT T+  L
Sbjct: 575 AIEMDPEPVEATPTKGSL 592


>gi|309389842|gb|ADO77722.1| Ferredoxin hydrogenase [Halanaerobium praevalens DSM 2228]
          Length = 471

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 25/70 (35%), Gaps = 6/70 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGT------RRTVRYDIDMIKCIYCGLCQ 110
              + +CI C  C   C   AI     P                +  ID  KC+ CG C 
Sbjct: 142 YIDQHKCIECGKCAKTCSYNAILENQRPCSRACELEAISSNADRQAKIDREKCVSCGSCI 201

Query: 111 EACPVDAIVE 120
            ACP  AI E
Sbjct: 202 NACPFGAITE 211



 Score = 35.1 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 21/58 (36%), Gaps = 13/58 (22%)

Query: 63  CIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C    C   CP  AI I                 ID  KCI CG C + C  +AI
Sbjct: 117 CRNCVAHKCVNACPVDAIVIIQNKAY-----------IDQHKCIECGKCAKTCSYNAI 163


>gi|288869832|ref|ZP_06111989.2| Fe-hydrogenase large subunit family protein [Clostridium hathewayi
           DSM 13479]
 gi|288869437|gb|EFD01736.1| Fe-hydrogenase large subunit family protein [Clostridium hathewayi
           DSM 13479]
          Length = 491

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 26/68 (38%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110
               ++C  C  C   CP  AI   + P         +  D      ID  KCI CG C 
Sbjct: 133 YIDPDKCKECGKCSQACPYNAIADLTRPCKKSCPVDAITMDEDGIVVIDESKCIQCGACI 192

Query: 111 EACPVDAI 118
            +CP  AI
Sbjct: 193 HSCPFGAI 200



 Score = 37.4 bits (85), Expect = 0.77,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 20/61 (32%), Gaps = 5/61 (8%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGT-----RRTVRYDIDMIKCIYCGLCQEACPVDA 117
           C  C +   +              +            R  ID  KC  CG C +ACP +A
Sbjct: 94  CEGCPIARYVVTDNCQKCMGKACQNSCNFGAISMGHDRAYIDPDKCKECGKCSQACPYNA 153

Query: 118 I 118
           I
Sbjct: 154 I 154


>gi|225016113|ref|ZP_03705346.1| hypothetical protein CLOSTMETH_00057 [Clostridium methylpentosum
           DSM 5476]
 gi|224951110|gb|EEG32319.1| hypothetical protein CLOSTMETH_00057 [Clostridium methylpentosum
           DSM 5476]
          Length = 628

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 37/96 (38%), Gaps = 15/96 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            L+ FF+ +   +    K            L +Y   E++C  C LC   CP  AIT   
Sbjct: 545 TLK-FFRNEYVAHVKDRKCPAGVC----KDLLQYEILEDKCKGCTLCARNCPVNAITGT- 598

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                        + ID  KCI CG C E C  +AI
Sbjct: 599 ---------VKNPHKIDPAKCIKCGACMERCKFNAI 625



 Score = 40.1 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 20/52 (38%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           +         ++         +  ++Y+I   KC  C LC   CPV+AI   
Sbjct: 547 KFFRNEYVAHVKDRKCPAGVCKDLLQYEILEDKCKGCTLCARNCPVNAITGT 598


>gi|158258988|dbj|BAF82038.1| Fe-hydrogenase-like protein [uncultured parabasalid eukaryote]
          Length = 456

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 23/71 (32%), Gaps = 3/71 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---YDIDMIKCIYCGLCQEACPV 115
              +C+ C  C   C   A         +   RR        +    C+ CG C   CPV
Sbjct: 16  DRGKCVGCGHCVEACEKVAGQCVLTLEPNGTRRRVRTALGVPMQQTNCVKCGQCTLVCPV 75

Query: 116 DAIVEGPNFEF 126
            AI E    + 
Sbjct: 76  GAITEKDELDI 86


>gi|157145889|ref|YP_001453208.1| electron transport complex protein RnfB [Citrobacter koseri ATCC
           BAA-895]
 gi|166225081|sp|A8AH09|RNFB_CITK8 RecName: Full=Electron transport complex protein rnfB
 gi|157083094|gb|ABV12772.1| hypothetical protein CKO_01640 [Citrobacter koseri ATCC BAA-895]
          Length = 192

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   +             + +    C  C LC + CP   I
Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTQCI 162

Query: 119 VEGPNFEFATETRQEL 134
              P  E     + +L
Sbjct: 163 ELRPVAETPDSWKWDL 178



 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C  C +ACPVDAI
Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132


>gi|319789973|ref|YP_004151606.1| Glutamate synthase (NADPH) [Thermovibrio ammonificans HB-1]
 gi|317114475|gb|ADU96965.1| Glutamate synthase (NADPH) [Thermovibrio ammonificans HB-1]
          Length = 505

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 31/98 (31%), Gaps = 25/98 (25%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
             FK      YPF              LR     +E+C+ CK C   C   A   +    
Sbjct: 1   MLFKKPQVAFYPF------------MVLR----DDEKCVRCKSCVDQCSFNATYYDEDLN 44

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                    R       C+ C  C+  CP DAI   PN
Sbjct: 45  ---------RIMNHHENCVNCKRCEAFCPTDAIKVVPN 73


>gi|225570648|ref|ZP_03779671.1| hypothetical protein CLOHYLEM_06748 [Clostridium hylemonae DSM
           15053]
 gi|225160566|gb|EEG73185.1| hypothetical protein CLOHYLEM_06748 [Clostridium hylemonae DSM
           15053]
          Length = 274

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQ 110
              +E+CI C  C+++CP  AI+ +  P                R  I+  KC+ CG+C 
Sbjct: 148 YIDQEKCIKCGKCKSVCPYDAISRKERPCQKACGVGAIESDNCGRARINNEKCVSCGMCM 207

Query: 111 EACPVDAI 118
            +CP  AI
Sbjct: 208 VSCPFGAI 215



 Score = 40.5 bits (93), Expect = 0.083,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 13/64 (20%)

Query: 57  PNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 C  C    C  +CP  A+++  G           R  ID  KCI CG C+  CP
Sbjct: 117 YEVSNMCKGCLAHPCMEVCPKDAVSMVKG-----------RSYIDQEKCIKCGKCKSVCP 165

Query: 115 VDAI 118
            DAI
Sbjct: 166 YDAI 169


>gi|167569319|ref|ZP_02362193.1| ferredoxin [Burkholderia oklahomensis C6786]
          Length = 288

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 25/99 (25%), Gaps = 18/99 (18%)

Query: 24  LRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG 83
           L            P                      E+ CI C LC   CP  AI     
Sbjct: 56  LAKLLGKPVIPLNPEHGVERPRP--------VAFIDEQLCIGCTLCMQACPVDAIVGAPK 107

Query: 84  PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                       + I    C  C LC   CPVD I   P
Sbjct: 108 Q----------MHTIVAELCTGCDLCVPPCPVDCIAMIP 136


>gi|95930556|ref|ZP_01313291.1| thiamine pyrophosphate enzyme-like TPP-binding [Desulfuromonas
           acetoxidans DSM 684]
 gi|95133391|gb|EAT15055.1| thiamine pyrophosphate enzyme-like TPP-binding [Desulfuromonas
           acetoxidans DSM 684]
          Length = 615

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 15/80 (18%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E+     + R    +         CI C+ C       A++++           T    +
Sbjct: 538 EREVVKNQPRYAMEITSD------CIGCRRCVEAFECPALSMDEA---------TTMAVL 582

Query: 99  DMIKCIYCGLCQEACPVDAI 118
           D  +CI CG C   CPV AI
Sbjct: 583 DQDRCIGCGTCIPVCPVHAI 602


>gi|312172333|emb|CBX80590.1| Electron transport complex protein rnfC [Erwinia amylovora ATCC
           BAA-2158]
          Length = 710

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 48/133 (36%), Gaps = 8/133 (6%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
           T++ P  K +          + +    E+ CI C  C   CPA A+  +       G   
Sbjct: 348 TLDVPVVKITNCILAPAVSEMGQNA-AEKNCIRCSACADACPA-ALLPQQLYWFSRGGDH 405

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF--EFATETRQELYYDKERLLNNGDRWES 150
                 ++  CI CG C   CP   I     +  E A     +L  ++  L  N  R+E+
Sbjct: 406 DKARAHNIADCIECGACAYVCP-SNIPLVQYYRQEKAEIQAIDLEAERAALAKN--RFEA 462

Query: 151 EIVRNIVTDSPYR 163
              + +  +   R
Sbjct: 463 R-QQRLEREKAAR 474


>gi|312793369|ref|YP_004026292.1| nitrite and sulfite reductase 4Fe-4S region [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180509|gb|ADQ40679.1| nitrite and sulphite reductase 4Fe-4S region [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 296

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 9/76 (11%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G          E  C  C LC+A+CPA+AI I+          +  +  ID  KC YCG 
Sbjct: 152 GIKGAIEPEWEESSCTFCGLCQAVCPAKAIQIDE---------KNKKITIDRDKCTYCGR 202

Query: 109 CQEACPVDAIVEGPNF 124
           C ++CP ++    P +
Sbjct: 203 CVKSCPTNSWKGKPGY 218


>gi|292488196|ref|YP_003531078.1| electron transport complex protein RnfC [Erwinia amylovora
           CFBP1430]
 gi|292899402|ref|YP_003538771.1| electron transport complex protein [Erwinia amylovora ATCC 49946]
 gi|291199250|emb|CBJ46367.1| electron transport complex protein [Erwinia amylovora ATCC 49946]
 gi|291553625|emb|CBA20670.1| Electron transport complex protein rnfC [Erwinia amylovora
           CFBP1430]
          Length = 750

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/133 (21%), Positives = 48/133 (36%), Gaps = 8/133 (6%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
           T++ P  K +          + +    E+ CI C  C   CPA A+  +       G   
Sbjct: 348 TLDVPVVKITNCILAPAVSEMGQNA-AEKNCIRCSACADACPA-ALLPQQLYWFSRGGDH 405

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF--EFATETRQELYYDKERLLNNGDRWES 150
                 ++  CI CG C   CP   I     +  E A     +L  ++  L  N  R+E+
Sbjct: 406 DKARAHNIADCIECGACAYVCP-SNIPLVQYYRQEKAEIQAIDLEAERAALAKN--RFEA 462

Query: 151 EIVRNIVTDSPYR 163
              + +  +   R
Sbjct: 463 R-QQRLEREKAAR 474


>gi|289523835|ref|ZP_06440689.1| NAD-dependent formate dehydrogenase, alpha subunit [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289502925|gb|EFD24089.1| NAD-dependent formate dehydrogenase, alpha subunit [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 247

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 18/65 (27%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + CI C  C   C     +           +    +      CI CG C E CP   I
Sbjct: 126 DPDNCIRCDRCVRACETLGPSAIGPAWRGFNKKIVTPFMEPPKSCIGCGGCAEVCPTGYI 185

Query: 119 VEGPN 123
                
Sbjct: 186 ECVDE 190


>gi|187932563|ref|YP_001885665.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium botulinum B str. Eklund 17B]
 gi|187720716|gb|ACD21937.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium botulinum B str. Eklund 17B]
          Length = 896

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 45/135 (33%), Gaps = 15/135 (11%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
            K T    FE    +      H +            C  C   C   A  I    + ++ 
Sbjct: 223 RKITREEAFEIIKRAEENGLMHQIPNADGPGNTHAICNCCG--CSCYATRIAGMFQNNNM 280

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVE-------GPNFEFATETRQELYYDKERLL 142
            R      ID  KC+ CG C + CPV+A+          P  E   + R++  Y+ +   
Sbjct: 281 VRSNYVSKIDKDKCVACGECVQVCPVNALKLGQKLCTKTPIVE---KKREDFAYNTDW-- 335

Query: 143 NNGDRWESEIVRNIV 157
              D+W  +   N  
Sbjct: 336 -GEDKWNVDYRINRE 349



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 3/86 (3%)

Query: 78  ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
            T E   +  +         +D  +CI CG C   C  DAI     ++  + T +EL   
Sbjct: 812 FTEEQMKKETERCLGCGATTVDQDQCIGCGACTTRCKFDAITLYKKYDAQSVTLKEL--- 868

Query: 138 KERLLNNGDRWESEIVRNIVTDSPYR 163
           K +++ N  + +  I    +  S  R
Sbjct: 869 KPKVIKNIIKRKFVIKARKIKKSFKR 894


>gi|59711540|ref|YP_204316.1| electron transport complex protein RnfC [Vibrio fischeri ES114]
 gi|59479641|gb|AAW85428.1| fused predicted 4Fe-4S ferredoxin-type protein/conserved protein
           (Rnf/Rsx reducing system) [Vibrio fischeri ES114]
          Length = 827

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 44/136 (32%), Gaps = 14/136 (10%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
               P  K +       +  L  Y +    CI C  C   CP   +  +           
Sbjct: 351 HQQVPITKITNCIITPDKKELPLYNHEMA-CIRCSSCADACPTS-LLPQQLYWYSKSEDY 408

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT---ETRQE--LYYDKERLLNNGDR 147
               + ++  CI CG C   CP   I     +  A     +R++  L  ++ +L     R
Sbjct: 409 DKCNEYNLNDCIECGACAYVCP-SEIPLVQYYRQAKSEIYSRKQDALAAERAKL-----R 462

Query: 148 WESEIVRNIVTDSPYR 163
           +E E    +  D   R
Sbjct: 463 FE-EKNARLERDKLER 477


>gi|42526786|ref|NP_971884.1| Fe-hydrogenase large subunit family protein [Treponema denticola
           ATCC 35405]
 gi|41817101|gb|AAS11795.1| Fe-hydrogenase large subunit family protein [Treponema denticola
           ATCC 35405]
          Length = 493

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112
            EE+CI C +C   CP  A+     P         +  D      ID  KCI+CG C   
Sbjct: 145 DEEKCINCGICLKNCPYHAVIKIPVPCEEACPVGAISKDENGKERIDYHKCIFCGNCMRE 204

Query: 113 CPVDAIV 119
           CP  A++
Sbjct: 205 CPFGAMM 211



 Score = 39.3 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 5/80 (6%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV-----RYDIDMIK 102
           R +         +E C AC   + +         + P   +  +  +     R  ID  K
Sbjct: 89  REKPTWPMLTVLDEACNACVKSKYMITNACQACVARPCMMNCPKTAIAISGGRARIDEEK 148

Query: 103 CIYCGLCQEACPVDAIVEGP 122
           CI CG+C + CP  A+++ P
Sbjct: 149 CINCGICLKNCPYHAVIKIP 168


>gi|83409919|emb|CAI64340.1| formate dehydrogenase like protein, beta chain [uncultured
           archaeon]
          Length = 384

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 26/81 (32%), Gaps = 8/81 (9%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG--------PRCHDGTRRT 93
              P    E  ++ Y      CI C  C+ +CP  A   +S                   
Sbjct: 264 EIFPEIPDEERMQYYMEPMADCIDCGACKEVCPVCACGEDSKCTMFHSLVDNYKMSMYHM 323

Query: 94  VRYDIDMIKCIYCGLCQEACP 114
           VR       CI CG C + CP
Sbjct: 324 VRLLHLSDSCIACGQCSDVCP 344



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 15/29 (51%)

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           R   Y   M  CI CG C+E CPV A  E
Sbjct: 274 RMQYYMEPMADCIDCGACKEVCPVCACGE 302


>gi|330984846|gb|EGH82949.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 290

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 10/75 (13%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           RG    +     E  CI C  C   CP  AI   +           + + + + +C  C 
Sbjct: 76  RGAAPAQVAFIREAECIGCTKCIQACPVDAIVGAAK----------LMHTVIVDECTGCD 125

Query: 108 LCQEACPVDAIVEGP 122
           LC   CPVD I   P
Sbjct: 126 LCVAPCPVDCIEMHP 140


>gi|283833245|ref|ZP_06352986.1| electron transport complex, RnfABCDGE type, B subunit [Citrobacter
           youngae ATCC 29220]
 gi|291070881|gb|EFE08990.1| electron transport complex, RnfABCDGE type, B subunit [Citrobacter
           youngae ATCC 29220]
          Length = 192

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   +             + +    C  C LC + CP   I
Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTQCI 162

Query: 119 VEGPNFEFATETRQEL 134
              P  E     + +L
Sbjct: 163 ELRPVAETPDSWKWDL 178



 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C  C +ACPVDAI
Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132


>gi|260779357|ref|ZP_05888249.1| electron transport complex protein RnfC [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260605521|gb|EEX31816.1| electron transport complex protein RnfC [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 923

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 37/104 (35%), Gaps = 9/104 (8%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C  C   CPA  +  +               ++++  CI CG C   CP   I    
Sbjct: 378 CIRCGQCAEACPAS-LLPQQLQWHAKAEEYDKCEELNLKDCIECGACAFVCP-SEIPLVQ 435

Query: 123 NFEFAT---ETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            +  A     TR+E   + E       R+E +  R +  D   R
Sbjct: 436 YYRQAKAEMRTRKE---ESEAAERAKIRFEEKKAR-LERDKAER 475



 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 19/43 (44%)

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           +  A     ++       TR+ +  +   + CI CG C EACP
Sbjct: 347 LPHANVPITKTANCILAPTRKEISPNQYEMACIRCGQCAEACP 389


>gi|240141254|ref|YP_002965734.1| NAD-dependent formate dehydrogenase, molybdenum containing, alpha
           subunit [Methylobacterium extorquens AM1]
 gi|240011231|gb|ACS42457.1| NAD-dependent formate dehydrogenase, molybdenum containing, alpha
           subunit [Methylobacterium extorquens AM1]
          Length = 950

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 2/98 (2%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVR 95
             K ++      + +   +     +CI C  C   C        +    R  D       
Sbjct: 148 HVKPASDRYLPKDESNPYFTYDPSKCIVCNRCVRACEETQGTFALTIEGRGFDSRVAAGP 207

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
            +    +C+ CG C +ACP   + E    ++      E
Sbjct: 208 TNFMQSECVSCGACVQACPTATLQEKTIHQYGQPDHSE 245


>gi|295402233|ref|ZP_06812190.1| formate dehydrogenase, alpha subunit [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294975728|gb|EFG51349.1| formate dehydrogenase, alpha subunit [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 987

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 3/83 (3%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD--- 97
                    + +   Y     +CIAC  C  +C    +             R +  +   
Sbjct: 129 RPKVDPSEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPRVIWDNGVP 188

Query: 98  IDMIKCIYCGLCQEACPVDAIVE 120
           I+   C+ CG C   CP +A++E
Sbjct: 189 INESSCVSCGQCVTVCPCNALME 211



 Score = 39.3 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q+          +       Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKLHNTAELMGIEHQSYPYRPKVDPSEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|325297340|ref|YP_004257257.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Bacteroides
           salanitronis DSM 18170]
 gi|324316893|gb|ADY34784.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Bacteroides
           salanitronis DSM 18170]
          Length = 1185

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 27/81 (33%), Gaps = 15/81 (18%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG  A     N  E CI C  C  +CP                A               T
Sbjct: 676 RGVAAFVPEWN-PENCIQCNKCAYVCPHAAIRPFVLDAEEQKGANFTTLKAVGKQFDGMT 734

Query: 94  VRYDIDMIKCIYCGLCQEACP 114
            R  +D++ C+ CG C + CP
Sbjct: 735 FRMQVDVLDCLGCGNCADVCP 755



 Score = 34.3 bits (77), Expect = 6.0,   Method: Composition-based stats.
 Identities = 8/20 (40%), Positives = 9/20 (45%)

Query: 99  DMIKCIYCGLCQEACPVDAI 118
           +   CI C  C   CP  AI
Sbjct: 686 NPENCIQCNKCAYVCPHAAI 705


>gi|320353023|ref|YP_004194362.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfobulbus propionicus DSM 2032]
 gi|320121525|gb|ADW17071.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfobulbus propionicus DSM 2032]
          Length = 786

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C  C LCE ICP  AI         DG      Y  D  KCI CG C + CP    V  P
Sbjct: 728 CRDCHLCETICPTGAIYRREITPGPDGVDY--EYVSDDDKCIACGFCADTCPCGIWVLRP 785


>gi|315028615|gb|EFT40547.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX4000]
          Length = 1243

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96
            AL       +RC  C  C  +CP  AI                              R 
Sbjct: 695 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 754

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125
            + +  C  CGLC EACP    A+V  P  E
Sbjct: 755 QVSVKDCTGCGLCVEACPAKGKALVMRPYEE 785


>gi|315025844|gb|EFT37776.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX2137]
          Length = 1243

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96
            AL       +RC  C  C  +CP  AI                              R 
Sbjct: 695 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 754

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125
            + +  C  CGLC EACP    A+V  P  E
Sbjct: 755 QVSVKDCTGCGLCVEACPAKGKALVMRPYEE 785


>gi|307295629|ref|ZP_07575464.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX0411]
 gi|306496341|gb|EFM65918.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX0411]
          Length = 1243

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96
            AL       +RC  C  C  +CP  AI                              R 
Sbjct: 695 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 754

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125
            + +  C  CGLC EACP    A+V  P  E
Sbjct: 755 QVSVKDCTGCGLCVEACPAKGKALVMRPYEE 785


>gi|257087295|ref|ZP_05581656.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis D6]
 gi|256995325|gb|EEU82627.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis D6]
          Length = 1223

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96
            AL       +RC  C  C  +CP  AI                              R 
Sbjct: 675 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 734

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125
            + +  C  CGLC EACP    A+V  P  E
Sbjct: 735 QVSVKDCTGCGLCVEACPAKGKALVMRPYEE 765


>gi|257082146|ref|ZP_05576507.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis
           E1Sol]
 gi|256990176|gb|EEU77478.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis
           E1Sol]
          Length = 1223

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96
            AL       +RC  C  C  +CP  AI                              R 
Sbjct: 675 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 734

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125
            + +  C  CGLC EACP    A+V  P  E
Sbjct: 735 QVSVKDCTGCGLCVEACPAKGKALVMRPYEE 765


>gi|256853610|ref|ZP_05558975.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Enterococcus
           faecalis T8]
 gi|256710553|gb|EEU25596.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Enterococcus
           faecalis T8]
          Length = 1226

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96
            AL       +RC  C  C  +CP  AI                              R 
Sbjct: 678 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 737

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125
            + +  C  CGLC EACP    A+V  P  E
Sbjct: 738 QVSVKDCTGCGLCVEACPAKGKALVMRPYEE 768


>gi|123427430|ref|XP_001307251.1| pyruvate:ferredoxin oxidoreductase F [Trichomonas vaginalis G3]
 gi|121888869|gb|EAX94321.1| pyruvate:ferredoxin oxidoreductase F [Trichomonas vaginalis G3]
          Length = 904

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/146 (20%), Positives = 49/146 (33%), Gaps = 19/146 (13%)

Query: 31  KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE-------SG 83
             T   P +   +S   +   A        ++CI C  C   C    I  +         
Sbjct: 673 PITARIPRDGLGSSKYEKRGIATNIPVWDADKCIQCNTCAYSCAHAVIRPQLMKHGKGPE 732

Query: 84  PRCHDGTRRTVRYD----IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE---TRQELYY 136
                 +++   YD    +    C+ C +C E CP  A+     F  ATE   T+    Y
Sbjct: 733 GVKVLQSKKFKGYDFAITVSAHDCLSCQVCIEKCPTKALS----FPLATEEVVTKAAALY 788

Query: 137 DK-ERLLNNGDRWESEIVRNIVTDSP 161
           DK  +L +     E++   N   +  
Sbjct: 789 DKFAKLPDIDALREADPALNESLEKK 814


>gi|52549205|gb|AAU83054.1| NADH-ubiquinone oxidoreductase NADH-binding 51 kD subunit
           [uncultured archaeon GZfos26D6]
          Length = 654

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 10/62 (16%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L  Y    ++C AC+LC   CP  AI  +          + V + ID  KCI CG+C + 
Sbjct: 559 LISYYIEPDKCTACRLCMKNCPEGAIEGD----------KRVIHVIDQTKCIKCGICYDV 608

Query: 113 CP 114
           CP
Sbjct: 609 CP 610



 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 17/40 (42%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            I+         +  + Y I+  KC  C LC + CP  AI
Sbjct: 545 HIKERRCPALVCKDLISYYIEPDKCTACRLCMKNCPEGAI 584


>gi|303327208|ref|ZP_07357650.1| iron-sulfur cluster-binding protein [Desulfovibrio sp. 3_1_syn3]
 gi|302863196|gb|EFL86128.1| iron-sulfur cluster-binding protein [Desulfovibrio sp. 3_1_syn3]
          Length = 364

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 11/76 (14%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                 E+ C+ C  C   CP +A+++                 +D+ +CI C  C   C
Sbjct: 186 THVQVDEKTCVGCGKCVKACPQKALSLRKKKS-----------QVDVNRCIGCFECITVC 234

Query: 114 PVDAIVEGPNFEFATE 129
           PV AI      E    
Sbjct: 235 PVKAISLDWATEMTPF 250



 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/37 (24%), Positives = 14/37 (37%)

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                +      +D   C+ CG C +ACP  A+    
Sbjct: 178 PGKKDQHATHVQVDEKTCVGCGKCVKACPQKALSLRK 214


>gi|288931116|ref|YP_003435176.1| CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit
           [Ferroglobus placidus DSM 10642]
 gi|288893364|gb|ADC64901.1| CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit
           [Ferroglobus placidus DSM 10642]
          Length = 804

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 5/101 (4%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++R         N   +C  C  C   CP   + I+ G      T+   +      +CI 
Sbjct: 390 KYRFFANDEELWNEINKCTQCMNCVFTCPHN-LRIDQGMAHAQKTKDLSKLAKLEEQCIA 448

Query: 106 CGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGD 146
           CG C++ACP + I        +   R    Y+K+  +  G 
Sbjct: 449 CGKCEQACPKN-IKIINVIMASNFDR---LYNKKGKMRVGR 485


>gi|109899274|ref|YP_662529.1| electron transport complex, RnfABCDGE type, C subunit
           [Pseudoalteromonas atlantica T6c]
 gi|109701555|gb|ABG41475.1| electron transport complex, RnfABCDGE type, C subunit
           [Pseudoalteromonas atlantica T6c]
          Length = 890

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 37/107 (34%), Gaps = 6/107 (5%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C   CP   +  +               D ++  CI CG C   CP   I  
Sbjct: 385 QPCIRCSACADACPVS-LLPQQLFWHSKAKELDKAQDYNLFDCIECGACAYVCP-SEIPL 442

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT----DSPYR 163
              +  A    +    +K++     +R+ES   R +      D  +R
Sbjct: 443 VHYYRVAKAEIRVEQEEKQKSDKARERFESRAARLVREQEARDEKHR 489


>gi|330506892|ref|YP_004383320.1| sulfite reductase subunit beta [Methanosaeta concilii GP-6]
 gi|328927700|gb|AEB67502.1| sulfite reductase, beta subunit [Methanosaeta concilii GP-6]
          Length = 286

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 21/69 (30%), Gaps = 11/69 (15%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G           E+C  C  C  +C   A  I                 ID  KC+ CG 
Sbjct: 155 GLMGRVLPQIDLEKCTGCGKCVEVCKVGATKIVEEKAI-----------IDYDKCVRCGR 203

Query: 109 CQEACPVDA 117
           C   CP  A
Sbjct: 204 CVAVCPEAA 212



 Score = 38.2 bits (87), Expect = 0.40,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 16/55 (29%)

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           A           G    V   ID+ KC  CG C E C V A             +
Sbjct: 143 AFPCTRPQFNEIGLMGRVLPQIDLEKCTGCGKCVEVCKVGATKIVEEKAIIDYDK 197


>gi|283955081|ref|ZP_06372584.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Campylobacter jejuni
           subsp. jejuni 414]
 gi|283793448|gb|EFC32214.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Campylobacter jejuni
           subsp. jejuni 414]
          Length = 1186

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 43/133 (32%), Gaps = 30/133 (22%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA------------------QAIT 79
           FE G+T    RG   +         CI C  C ++CP                       
Sbjct: 668 FEHGTTEYEKRGVGVMVPRWIE-ANCIQCNQCASVCPHAVIRPFLINDEEMANAPRGVKD 726

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV--DAIVEGP--------NFEFATE 129
                +   G + + +  +  + C  C LC   CP    ++V  P          E A  
Sbjct: 727 HALEAKGVKGEKLSFKIQVSPLDCTGCELCVHECPTKEKSLVMVPLREEMDFGEQENADY 786

Query: 130 TRQELYYDKERLL 142
             +E+ Y K+ +L
Sbjct: 787 LFKEITY-KDDIL 798


>gi|196250631|ref|ZP_03149320.1| formate dehydrogenase, alpha subunit [Geobacillus sp. G11MC16]
 gi|196209850|gb|EDY04620.1| formate dehydrogenase, alpha subunit [Geobacillus sp. G11MC16]
          Length = 987

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 27/83 (32%), Gaps = 3/83 (3%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---YD 97
                    + +   Y     +CIAC  C   C    +             R V      
Sbjct: 129 RPKVDPSEVDMSHPFYRYDPNQCIACGQCVEACQNLQVNETLSIDWEAERPRVVWDGGVP 188

Query: 98  IDMIKCIYCGLCQEACPVDAIVE 120
           I+   C+ CG C   CP +A++E
Sbjct: 189 INESSCVSCGHCVTVCPCNALME 211



 Score = 38.5 bits (88), Expect = 0.27,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q           +       Y  D  +
Sbjct: 91  RLLENHLLYCTVCDNNNGNCKLHNTAEMMQIEHQTYPYRPKVDPSEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C EAC
Sbjct: 151 CIACGQCVEAC 161


>gi|148642843|ref|YP_001273356.1| tungsten formylmethanofuran dehydrogenase, subunit F, FwdF
           [Methanobrevibacter smithii ATCC 35061]
 gi|148551860|gb|ABQ86988.1| tungsten formylmethanofuran dehydrogenase, subunit F, FwdF
           [Methanobrevibacter smithii ATCC 35061]
          Length = 335

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 37/100 (37%), Gaps = 8/100 (8%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG----PRCHDGTRRTVRY 96
           G   P  RG   +         C+ C LC   CP  A+++           +     V  
Sbjct: 39  GPIVPIARGLIEMDLVSVTSNTCVLCGLCSVACPFDALSLTINGNDIKETGNYPVWEVES 98

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
           +I+   CIYCG C   CP D I+          +R++L  
Sbjct: 99  EINDDDCIYCGRCYSVCPRDTILFKREL----PSREDLVI 134



 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
             R +  +      E++C+ C +C  +CPA AI++ + P   +        ++D  KCIY
Sbjct: 127 PSREDLVIGEISVDEDKCVYCSICSEMCPAGAISLTNNPEFSNDNLNNTI-EVDTSKCIY 185

Query: 106 CGLCQEACPVDAI 118
           CG+C+ ACP DAI
Sbjct: 186 CGVCKRACPQDAI 198



 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++ CI C  C ++CP   I                   +D  KC+YC +C E CP  AI
Sbjct: 101 NDDDCIYCGRCYSVCPRDTILF-KRELPSREDLVIGEISVDEDKCVYCSICSEMCPAGAI 159

Query: 119 VEGPNFEFATET 130
               N EF+ + 
Sbjct: 160 SLTNNPEFSNDN 171



 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 4/85 (4%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDM 100
           P F  ++          +CI C +C+  CP  AI             +    +    I  
Sbjct: 165 PEFSNDNLNNTIEVDTSKCIYCGVCKRACPQDAIKAVCSTCMLQDQIKAPEINGTASILK 224

Query: 101 IKCIYCGLCQEACPVDAIVEGPNFE 125
             C+ C  C+E CPVD I     FE
Sbjct: 225 DGCVNCSWCKEVCPVDTINVTKPFE 249



 Score = 42.4 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 32/76 (42%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R     R+  +  +RC+ C +C  +CP  ++ +        G        +    C+ CG
Sbjct: 6   RSGEETRKLSHNNDRCVGCGICTDVCPTSSLRLGPIVPIARGLIEMDLVSVTSNTCVLCG 65

Query: 108 LCQEACPVDAIVEGPN 123
           LC  ACP DA+    N
Sbjct: 66  LCSVACPFDALSLTIN 81



 Score = 38.9 bits (89), Expect = 0.24,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 11/79 (13%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +  + +  F G   L        +  AC  C+ +CP  A+ I               
Sbjct: 237 CPVDTINVTKPFEGTLKLVETDESTCKGDACHACQDVCPCDAVEIIDNKA---------- 286

Query: 96  YDIDMIKCIYCGLCQEACP 114
             I++  C  CG C  ACP
Sbjct: 287 -TINLDYCNLCGACVNACP 304



 Score = 33.9 bits (76), Expect = 8.3,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+ C  C+ +CP   I +    +  +GT + V  D    K   C  CQ+ CP DA+    
Sbjct: 227 CVNCSWCKEVCPVDTINVT---KPFEGTLKLVETDESTCKGDACHACQDVCPCDAVEIID 283

Query: 123 N 123
           N
Sbjct: 284 N 284


>gi|53804900|ref|YP_113272.1| pyruvate ferredoxin/flavodoxin oxidoreductase family protein
           [Methylococcus capsulatus str. Bath]
 gi|53758661|gb|AAU92952.1| pyruvate ferredoxin/flavodoxin oxidoreductase family protein
           [Methylococcus capsulatus str. Bath]
          Length = 1188

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 31/113 (27%), Gaps = 27/113 (23%)

Query: 37  PFEKGSTSPRFRGEHALRRYP---NGEERCIACKLCEAICPA--------------QAIT 79
           P +    S   R E             + CI C  C  +CP                A  
Sbjct: 660 PVDGTYPSGTTRWEKRNIADTVPVWEPDICIQCGNCSFVCPHSVIRAKFYPESRLAGAPA 719

Query: 80  IESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPVD--------AIVEGP 122
                  +       RY   + +  C  CGLC E CPV         AI   P
Sbjct: 720 GFKSAPINARGFPETRYTLQVYVEDCTGCGLCAEVCPVRSPREAGVKAINMRP 772


>gi|330937551|gb|EGH41492.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas
           syringae pv. pisi str. 1704B]
          Length = 291

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 28/75 (37%), Gaps = 10/75 (13%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           RG    +     E  CI C  C   CP  AI   S           + + + + +C  C 
Sbjct: 76  RGTAPAQVAFIREAECIGCTKCIQACPVDAILGASK----------LMHTVIIDECTGCD 125

Query: 108 LCQEACPVDAIVEGP 122
           LC   CPVD I   P
Sbjct: 126 LCVAPCPVDCIEMHP 140


>gi|330835751|ref|YP_004410479.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Metallosphaera cuprina Ar-4]
 gi|329567890|gb|AEB95995.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Metallosphaera cuprina Ar-4]
          Length = 109

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 26/89 (29%), Gaps = 2/89 (2%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93
           +  P +                     + C+A   C   CP         P      ++ 
Sbjct: 22  VYAPADPPPVPKEKALGIHGTIVGVDFDLCLADGSCITACPVNVFQWYDTPGHPASEKKA 81

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
               I+   CI+C  C   CPV AI   P
Sbjct: 82  DP--INEQACIFCMACVNVCPVAAIDVKP 108


>gi|323978232|gb|EGB73318.1| electron transporter [Escherichia coli TW10509]
          Length = 192

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 26/84 (30%), Gaps = 10/84 (11%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            A       E  CI C  C   CP  AI   +             + +    C  C LC 
Sbjct: 105 PARMVAFIDENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCV 154

Query: 111 EACPVDAIVEGPNFEFATETRQEL 134
           + CP   I   P  E     + +L
Sbjct: 155 DPCPTHCISLQPVAETPDSWKWDL 178


>gi|320668652|gb|EFX35457.1| electron transport complex protein RnfB [Escherichia coli O157:H7
           str. LSU-61]
          Length = 192

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   +             + +    C  C LC + CP   I
Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTHCI 162

Query: 119 VEGPNFEFATETRQEL 134
              P  E     + +L
Sbjct: 163 SLQPVAETPDSWKWDL 178



 Score = 35.5 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C  C +ACPVDAI
Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132


>gi|332654222|ref|ZP_08419966.1| Fe-hydrogenase large subunit family protein [Ruminococcaceae
           bacterium D16]
 gi|332517308|gb|EGJ46913.1| Fe-hydrogenase large subunit family protein [Ruminococcaceae
           bacterium D16]
          Length = 505

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQ 110
              + +CI C  C   CP  AI     P          G+    R  ID  KC+ CG+C 
Sbjct: 145 FIDQTKCIKCGKCADACPYGAILKLERPCAEACGMDAIGSDELGRAKIDYDKCVSCGMCL 204

Query: 111 EACPVDAI 118
             CP  AI
Sbjct: 205 VNCPFGAI 212



 Score = 41.2 bits (95), Expect = 0.046,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 61  ERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             C  C    C  +CP  AI++  G              ID  KCI CG C +ACP  AI
Sbjct: 118 NMCQGCLAHPCMEVCPKDAISLVQGKSF-----------IDQTKCIKCGKCADACPYGAI 166


>gi|289550091|ref|YP_003470995.1| Formate dehydrogenase related protein [Staphylococcus lugdunensis
           HKU09-01]
 gi|315659277|ref|ZP_07912141.1| NAD-dependent formate dehydrogenase [Staphylococcus lugdunensis
           M23590]
 gi|289179623|gb|ADC86868.1| Formate dehydrogenase related protein [Staphylococcus lugdunensis
           HKU09-01]
 gi|315495702|gb|EFU84033.1| NAD-dependent formate dehydrogenase [Staphylococcus lugdunensis
           M23590]
          Length = 984

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 13/96 (13%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P+EK               Y     +CI C  C   C    +             R +  
Sbjct: 131 PYEKDYGP----------FYRYDPNQCILCGRCVEACQDIEVNETIRIDWDREHPRVIWD 180

Query: 97  D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           +   I+   C+ CG C   CP +A++E      A  
Sbjct: 181 NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGY 216



 Score = 40.9 bits (94), Expect = 0.058,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 16/68 (23%), Gaps = 8/68 (11%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105
           R        C  C      CE                             Y  D  +CI 
Sbjct: 90  RILEKHMLYCTVCDYNNGDCEIHNTMDEWGLQHQTYEYKEKPYEKDYGPFYRYDPNQCIL 149

Query: 106 CGLCQEAC 113
           CG C EAC
Sbjct: 150 CGRCVEAC 157


>gi|312112276|ref|YP_003990592.1| formate dehydrogenase, subunit alpha [Geobacillus sp. Y4.1MC1]
 gi|311217377|gb|ADP75981.1| formate dehydrogenase, alpha subunit [Geobacillus sp. Y4.1MC1]
          Length = 987

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 3/83 (3%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD--- 97
                    + +   Y     +CIAC  C  +C    +             R +  +   
Sbjct: 129 RPKVDPSEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPRVIWDNGVP 188

Query: 98  IDMIKCIYCGLCQEACPVDAIVE 120
           I+   C+ CG C   CP +A++E
Sbjct: 189 INESSCVSCGQCVTVCPCNALME 211



 Score = 39.3 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q+          +       Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKLHNTAELMGIEHQSYPYRPKVDPSEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|242399493|ref|YP_002994918.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit F
           [Thermococcus sibiricus MM 739]
 gi|242265887|gb|ACS90569.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit F
           [Thermococcus sibiricus MM 739]
          Length = 602

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 10/70 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L +Y    E+C  C  C  +CP +AI+ E G              I+   CI CG C E 
Sbjct: 537 LIKYVIITEKCTGCTACAIMCPVKAISGERGKPHL----------INQEACIKCGTCYEV 586

Query: 113 CPVDAIVEGP 122
           C  +AI    
Sbjct: 587 CRFNAIEITD 596



 Score = 38.5 bits (88), Expect = 0.27,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 15/39 (38%)

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              G       +  ++Y I   KC  C  C   CPV AI
Sbjct: 524 HIEGRCPAKVCKPLIKYVIITEKCTGCTACAIMCPVKAI 562


>gi|218133263|ref|ZP_03462067.1| hypothetical protein BACPEC_01128 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992136|gb|EEC58140.1| hypothetical protein BACPEC_01128 [Bacteroides pectinophilus ATCC
           43243]
          Length = 483

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQA------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
               ++C  C  C   CP  A        +++ P             ID  KCI CG C 
Sbjct: 126 YIDPQKCRECGQCAKACPYNAIADLIRPCMKTCPVGAIEMDEYGVSKIDESKCIECGKCI 185

Query: 111 EACPVDAI 118
            +CP  AI
Sbjct: 186 HSCPFGAI 193


>gi|166032525|ref|ZP_02235354.1| hypothetical protein DORFOR_02240 [Dorea formicigenerans ATCC
           27755]
 gi|166026882|gb|EDR45639.1| hypothetical protein DORFOR_02240 [Dorea formicigenerans ATCC
           27755]
          Length = 607

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 11/69 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              ++ CI CK C       AI +  G              ID   C  C LC + CPV 
Sbjct: 550 HVDQDSCIGCKKCIRDLGCPAIVMNDGK-----------ICIDASMCTGCHLCSQVCPVC 598

Query: 117 AIVEGPNFE 125
           AI  G ++E
Sbjct: 599 AIAGGDDYE 607


>gi|158321271|ref|YP_001513778.1| formate dehydrogenase, alpha subunit [Alkaliphilus oremlandii
           OhILAs]
 gi|158141470|gb|ABW19782.1| formate dehydrogenase, alpha subunit [Alkaliphilus oremlandii
           OhILAs]
          Length = 891

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 28/83 (33%), Gaps = 7/83 (8%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYD 97
           EK +    +        Y     +CI C  C  +C   Q     +       T     + 
Sbjct: 126 EKRNLPIDYSNHF----YTYDPNKCILCGKCVRVCSELQCTNAITIDERGFHTSIATPFR 181

Query: 98  --IDMIKCIYCGLCQEACPVDAI 118
             ++   C+ CG C   CPV A+
Sbjct: 182 KGLEHSTCVSCGNCVAVCPVGAL 204



 Score = 37.0 bits (84), Expect = 0.94,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 19/66 (28%), Gaps = 8/66 (12%)

Query: 56  YPNGEERCIAC---KLCEAICPAQAI-----TIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           + N    C+ C     C+             + +   R          Y  D  KCI CG
Sbjct: 91  FSNHPNDCLTCEKSGECKLQDYCYEYGVLGGSYKGEKRNLPIDYSNHFYTYDPNKCILCG 150

Query: 108 LCQEAC 113
            C   C
Sbjct: 151 KCVRVC 156


>gi|218532746|ref|YP_002423562.1| formate dehydrogenase, subunit alpha [Methylobacterium
           chloromethanicum CM4]
 gi|218525049|gb|ACK85634.1| formate dehydrogenase, alpha subunit [Methylobacterium
           chloromethanicum CM4]
          Length = 950

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 2/98 (2%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVR 95
             K ++      + +   +     +CI C  C   C        +    R  D       
Sbjct: 148 HVKPASDRYLPKDESNPYFTYDPSKCIVCNRCVRACEETQGTFALTIEGRGFDSRVAAGP 207

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
            +    +C+ CG C +ACP   + E    ++      E
Sbjct: 208 TNFMQSECVSCGACVQACPTATLQEKTIHQYGQPDHSE 245


>gi|134300063|ref|YP_001113559.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfotomaculum reducens MI-1]
 gi|134052763|gb|ABO50734.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Desulfotomaculum reducens MI-1]
          Length = 267

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 30/91 (32%), Gaps = 21/91 (23%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C+ C +C   C   AI+                +++  +KC  CG C   CP +AI
Sbjct: 47  DSSICLECGMCRESCRFGAIS--------------ETFNMIPMKCEGCGACVLVCPQEAI 92

Query: 119 VE----GPNFEFATETRQELYYDKERLLNNG 145
                       +   R    Y    LL+ G
Sbjct: 93  RLEDVKTGETYLSNTQRGTFSY---ALLDIG 120


>gi|148257546|ref|YP_001242131.1| putative 2-ketoglutarate [Bradyrhizobium sp. BTAi1]
 gi|146409719|gb|ABQ38225.1| putative 2-ketoglutarate [Bradyrhizobium sp. BTAi1]
          Length = 599

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 30/107 (28%), Gaps = 20/107 (18%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
             K +     R  +   +       CI C  C  ICP   IT        D   R     
Sbjct: 475 DVKLALGEAHRCLNCDVQTVFSNTLCIECDACADICPMDCITFTDNGEEADLRSRLRAPS 534

Query: 98  IDMIK--------------------CIYCGLCQEACPVDAIVEGPNF 124
           +   +                    C++CGLC E CP  A      F
Sbjct: 535 VHPDQSLYVSSDLKTGRVMVKDEDVCLHCGLCAERCPTGAWDMQKYF 581



 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query: 103 CIYCGLCQEACPVDAIVEGPNFEFAT 128
           CI C  C + CP+D I    N E A 
Sbjct: 500 CIECDACADICPMDCITFTDNGEEAD 525


>gi|283768913|ref|ZP_06341823.1| electron transport complex, RnfABCDGE type, C subunit [Bulleidia
           extructa W1219]
 gi|283104466|gb|EFC05840.1| electron transport complex, RnfABCDGE type, C subunit [Bulleidia
           extructa W1219]
          Length = 438

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 26/86 (30%), Gaps = 2/86 (2%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P  + S S    G   ++        C+ C  C   CP   +        H        
Sbjct: 332 IPNNQWSISQSTNGVTVMKHIKEEAINCLRCGACVDHCPMG-LEPVRIADEHKVVDYDHL 390

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEG 121
             + +  CI CGLC   CP   I   
Sbjct: 391 VKLRVTDCIECGLCTYVCP-SKIDMT 415


>gi|239635947|ref|ZP_04676964.1| formate dehydrogenase, alpha subunit [Staphylococcus warneri
           L37603]
 gi|239598412|gb|EEQ80892.1| formate dehydrogenase, alpha subunit [Staphylococcus warneri
           L37603]
          Length = 989

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 13/96 (13%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P+EK               Y     +CI C  C   C    +             R +  
Sbjct: 131 PYEKDYGP----------FYRYDPNQCILCGRCVEACQDIEVNETISIDWDREHPRVIWD 180

Query: 97  D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           +   I+   C+ CG C   CP +A++E      A  
Sbjct: 181 NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGY 216



 Score = 41.2 bits (95), Expect = 0.051,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 16/68 (23%), Gaps = 8/68 (11%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105
           R        C  C      CE                             Y  D  +CI 
Sbjct: 90  RILEKHMLYCTVCDYNNGDCEIHNTMDEWGLQHQTYEYKEKPYEKDYGPFYRYDPNQCIL 149

Query: 106 CGLCQEAC 113
           CG C EAC
Sbjct: 150 CGRCVEAC 157


>gi|227872319|ref|ZP_03990674.1| pyruvate synthase [Oribacterium sinus F0268]
 gi|227841826|gb|EEJ52101.1| pyruvate synthase [Oribacterium sinus F0268]
          Length = 1178

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 44/134 (32%), Gaps = 30/134 (22%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG        N  + CI C  C  +CP               +A   +     +      
Sbjct: 681 RGIAVNVPAWN-PDNCIQCNFCSYVCPHAAIRAFAYTEDEAAKAPEADQQKAMNGMPNYK 739

Query: 94  VRYDIDMIKCIYCGLCQEACP----VDAIVEGPN---------FEFATE--TRQELYYDK 138
               + ++ C+ CG C   CP      A+V  P          F++A E   +QE+    
Sbjct: 740 FGIKVSVLDCVGCGSCANVCPGMKGEKALVMSPIEDNLDRQKYFDYAVELPEKQEVIAKF 799

Query: 139 ERLLNNGDRWESEI 152
           +     G +++  +
Sbjct: 800 KETTVKGSQFKKPL 813


>gi|322807129|emb|CBZ04703.1| dihydropyrimidine dehydrogenase [NADP+] [Clostridium botulinum
           H04402 065]
          Length = 411

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 7/110 (6%)

Query: 15  EFVGAFFLCLRY-FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
           + +      ++   F+    +     K            +      EE C+ C  C   C
Sbjct: 295 DMIEGLSYYMKEKGFEKLEDMVGLANKNIIPAEDLDRGYIVYPKFNEENCVGCGRCYISC 354

Query: 74  PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                    G +      +  +  ++   C+ C LC   CPV  I +G  
Sbjct: 355 YDG------GHQAIKWDGKNRKPILEKENCVGCHLCANVCPVQCISKGEI 398


>gi|218705129|ref|YP_002412648.1| electron transport complex protein RnfB [Escherichia coli UMN026]
 gi|293405127|ref|ZP_06649119.1| electron transport complex protein RnfB [Escherichia coli FVEC1412]
 gi|293409939|ref|ZP_06653515.1| conserved hypothetical protein [Escherichia coli B354]
 gi|298380775|ref|ZP_06990374.1| electron transport complex protein rnfB [Escherichia coli FVEC1302]
 gi|300901565|ref|ZP_07119634.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 198-1]
 gi|301026784|ref|ZP_07190188.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 69-1]
 gi|331663100|ref|ZP_08364010.1| electron transport complex protein RnfB [Escherichia coli TA143]
 gi|226735416|sp|B7NB82|RNFB_ECOLU RecName: Full=Electron transport complex protein rnfB
 gi|218432226|emb|CAR13116.1| putative iron-sulfur protein [Escherichia coli UMN026]
 gi|291427335|gb|EFF00362.1| electron transport complex protein RnfB [Escherichia coli FVEC1412]
 gi|291470407|gb|EFF12891.1| conserved hypothetical protein [Escherichia coli B354]
 gi|298278217|gb|EFI19731.1| electron transport complex protein rnfB [Escherichia coli FVEC1302]
 gi|300355032|gb|EFJ70902.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 198-1]
 gi|300395322|gb|EFJ78860.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 69-1]
 gi|323968396|gb|EGB63802.1| electron transporter [Escherichia coli M863]
 gi|327252743|gb|EGE64397.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli STEC_7v]
 gi|331058899|gb|EGI30876.1| electron transport complex protein RnfB [Escherichia coli TA143]
          Length = 192

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 26/84 (30%), Gaps = 10/84 (11%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            A       E  CI C  C   CP  AI   +             + +    C  C LC 
Sbjct: 105 PARMVAFIDENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCV 154

Query: 111 EACPVDAIVEGPNFEFATETRQEL 134
           + CP   I   P  E     + +L
Sbjct: 155 DPCPTHCISLQPVAETPDSWKWDL 178


>gi|197334471|ref|YP_002155696.1| electron transport complex protein RnfC [Vibrio fischeri MJ11]
 gi|197315961|gb|ACH65408.1| electron transport complex protein RnfC [Vibrio fischeri MJ11]
          Length = 784

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/136 (19%), Positives = 44/136 (32%), Gaps = 14/136 (10%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
               P  K +       +  L  Y +    CI C  C   CP   +  +           
Sbjct: 351 HQQVPITKITNCIITPDKKELPLYNHEMA-CIRCSSCADACPTS-LLPQQLYWYSKSEDY 408

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT---ETRQE--LYYDKERLLNNGDR 147
               + ++  CI CG C   CP   I     +  A     +R++  L  ++ +L     R
Sbjct: 409 DKCNEYNLADCIECGACAYVCP-SEIPLVQYYRQAKSEIYSRKQDALAAERAKL-----R 462

Query: 148 WESEIVRNIVTDSPYR 163
           +E E    +  D   R
Sbjct: 463 FE-EKNARLERDKLER 477


>gi|158520606|ref|YP_001528476.1| hypothetical protein Dole_0589 [Desulfococcus oleovorans Hxd3]
 gi|158509432|gb|ABW66399.1| protein of unknown function DUF362 [Desulfococcus oleovorans Hxd3]
          Length = 385

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 10/59 (16%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           C  C +C + CP  A+T+  G               D   CI+C  CQE CP  AI   
Sbjct: 324 CKQCGICVSHCPVNAMTMAEGEFP----------RADAAACIHCYCCQEMCPEHAIELT 372



 Score = 35.5 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%)

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           R     ++    C  CG+C   CPV+A+  
Sbjct: 312 RMNCTPEVVEAVCKQCGICVSHCPVNAMTM 341


>gi|82777102|ref|YP_403451.1| electron transport complex protein RnfB [Shigella dysenteriae
           Sd197]
 gi|309788405|ref|ZP_07683009.1| electron transport complex, RnfABCDGE type, B subunit [Shigella
           dysenteriae 1617]
 gi|123769594|sp|Q32FE5|RNFB_SHIDS RecName: Full=Electron transport complex protein rnfB
 gi|81241250|gb|ABB61960.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
 gi|308923787|gb|EFP69290.1| electron transport complex, RnfABCDGE type, B subunit [Shigella
           dysenteriae 1617]
          Length = 192

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   +             + +    C  C LC + CP   I
Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTHCI 162

Query: 119 VEGPNFEFATETRQEL 134
              P  E     + +L
Sbjct: 163 SLQPVAETPDSWKWDL 178



 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +   +A  ++   +     R      ID   CI C  C +ACPVDAI
Sbjct: 86  AELLNVEAQPLDGEAQELTPARMVAV--IDENNCIGCTKCIQACPVDAI 132


>gi|152974336|ref|YP_001373853.1| formate dehydrogenase, alpha subunit [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|152023088|gb|ABS20858.1| formate dehydrogenase, alpha subunit [Bacillus cytotoxicus NVH
           391-98]
          Length = 980

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+ K   SP    + +   Y     +CIAC  C  +C    +             R +
Sbjct: 125 KYPY-KPKVSPSEV-DMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWSLERPRVI 182

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
             +   I+   C+ CG C   CP +A++E
Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211



 Score = 39.7 bits (91), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 20/71 (28%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+       + IE     +               Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKIHNTVHMMGIEEQKYPYKPKVSPSEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|326796151|ref|YP_004313971.1| electron transport complex protein rnfB [Marinomonas mediterranea
           MMB-1]
 gi|326546915|gb|ADZ92135.1| Electron transport complex protein rnfB [Marinomonas mediterranea
           MMB-1]
          Length = 198

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 27/82 (32%), Gaps = 10/82 (12%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E            A R     E+ CI C  C   CP  AI   +             + +
Sbjct: 91  EALPLDGDVEESPAKRVAVIREDECIGCTKCIQACPVDAILGAAKQ----------MHTV 140

Query: 99  DMIKCIYCGLCQEACPVDAIVE 120
              +C  C LC E CPVD I  
Sbjct: 141 IADECTGCDLCVEPCPVDCIDM 162


>gi|308274764|emb|CBX31363.1| hypothetical protein N47_E48750 [uncultured Desulfobacterium sp.]
          Length = 1412

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 6/62 (9%)

Query: 59   GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              ++CI C LC  ICP        G    D   +  R       C  CGLC  +CP  AI
Sbjct: 1341 DAQKCIGCGLCAEICPFG------GIIMEDFEGKGQRAKNVPASCKGCGLCAASCPQKAI 1394

Query: 119  VE 120
              
Sbjct: 1395 DM 1396



 Score = 42.0 bits (97), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)

Query: 97   DIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
             +D  KCI CGLC E CP   I+   +FE
Sbjct: 1339 QVDAQKCIGCGLCAEICPFGGIIM-EDFE 1366



 Score = 35.5 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 3/35 (8%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           ID+ KC  CG C + CPV        ++     R+
Sbjct: 43  IDLSKCTSCGDCAKVCPVT---LPNEYDETLSERK 74


>gi|302387727|ref|YP_003823549.1| Ferredoxin hydrogenase [Clostridium saccharolyticum WM1]
 gi|302198355|gb|ADL05926.1| Ferredoxin hydrogenase [Clostridium saccharolyticum WM1]
          Length = 483

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110
               ++C  C  C   CP  AI   + P         +  D      ID  KCI CG C 
Sbjct: 125 YIDPDKCKECGKCSQACPYNAIADLTRPCKKSCPVDAITMDENGIVVIDESKCIQCGACI 184

Query: 111 EACPVDAI 118
             CP  AI
Sbjct: 185 HGCPFGAI 192


>gi|237708078|ref|ZP_04538559.1| pyruvate-flavodoxin oxidoreductase [Bacteroides sp. 9_1_42FAA]
 gi|229457906|gb|EEO63627.1| pyruvate-flavodoxin oxidoreductase [Bacteroides sp. 9_1_42FAA]
          Length = 1181

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 31/90 (34%), Gaps = 15/90 (16%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGP 84
           E+G+     RG  A     N  E CI C  C  +CP                A       
Sbjct: 667 EQGTAQYEKRGVAAFVPEWN-AENCIQCNKCAYVCPHASIRPFVLDAEEQKGANFETLKA 725

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                   T R  +D++ C+ CG C + CP
Sbjct: 726 VGKQFDGMTFRIQVDVLDCLGCGNCADVCP 755


>gi|237724775|ref|ZP_04555256.1| pyruvate-flavodoxin oxidoreductase [Bacteroides sp. D4]
 gi|229436970|gb|EEO47047.1| pyruvate-flavodoxin oxidoreductase [Bacteroides dorei 5_1_36/D4]
          Length = 1175

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 31/90 (34%), Gaps = 15/90 (16%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGP 84
           E+G+     RG  A     N  E CI C  C  +CP                A       
Sbjct: 667 EQGTAQYEKRGVAAFVPEWN-AENCIQCNKCAYVCPHASIRPFVLDAEEQKGANFETLKA 725

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                   T R  +D++ C+ CG C + CP
Sbjct: 726 VGKQFDGMTFRIQVDVLDCLGCGNCADVCP 755


>gi|296140639|ref|YP_003647882.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Tsukamurella
           paurometabola DSM 20162]
 gi|296028773|gb|ADG79543.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Tsukamurella
           paurometabola DSM 20162]
          Length = 510

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 26/77 (33%), Gaps = 5/77 (6%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + C +   C   CP   I          G        +D   C+ CG C  ACP
Sbjct: 1   MPHVITQSCCSDAACTFACPVNCIHPTPDE---PGFATAEMLYVDPTTCVDCGACVTACP 57

Query: 115 VDAIVEGPNFEFATETR 131
           VDAI  GP      E +
Sbjct: 58  VDAI--GPAHRLPEEHK 72


>gi|261418787|ref|YP_003252469.1| formate dehydrogenase, subunit alpha [Geobacillus sp. Y412MC61]
 gi|319765603|ref|YP_004131104.1| formate dehydrogenase, subunit alpha [Geobacillus sp. Y412MC52]
 gi|261375244|gb|ACX77987.1| formate dehydrogenase, alpha subunit [Geobacillus sp. Y412MC61]
 gi|317110469|gb|ADU92961.1| formate dehydrogenase, alpha subunit [Geobacillus sp. Y412MC52]
          Length = 987

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 27/83 (32%), Gaps = 3/83 (3%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---YD 97
                    + +   Y     +CIAC  C   C    +             R V      
Sbjct: 129 RPKVDPSEVDMSHPFYRYDPNQCIACGQCVEACQNLQVNETLSIDWEAERPRVVWDGGVP 188

Query: 98  IDMIKCIYCGLCQEACPVDAIVE 120
           I+   C+ CG C   CP +A++E
Sbjct: 189 INESSCVSCGHCVTVCPCNALME 211



 Score = 38.5 bits (88), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q           +       Y  D  +
Sbjct: 91  RLLENHLLYCTVCDNNNGNCKLHNTAEMMQIEHQTYPYRPKVDPSEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C EAC
Sbjct: 151 CIACGQCVEAC 161


>gi|90412211|ref|ZP_01220217.1| anaerobic sulfite reductase subunit C [Photobacterium profundum
           3TCK]
 gi|90326935|gb|EAS43320.1| anaerobic sulfite reductase subunit C [Photobacterium profundum
           3TCK]
          Length = 335

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 27/87 (31%), Gaps = 8/87 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +    +    G   + +     ERCI C  C  +C   A    S             
Sbjct: 153 CPNDCAKANMADFGILGIAQIDFKSERCIGCGACVKVCSQHAANCLSIKHGKATKEV--- 209

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGP 122
                 KCI CG C  ACP  A    P
Sbjct: 210 -----SKCIGCGECVLACPTLAWQRNP 231



 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 14/47 (29%), Gaps = 1/47 (2%)

Query: 68  LCEAICPAQAITIESGPRC-HDGTRRTVRYDIDMIKCIYCGLCQEAC 113
               +  A      +       G     + D    +CI CG C + C
Sbjct: 144 YHLKLVLAGCPNDCAKANMADFGILGIAQIDFKSERCIGCGACVKVC 190


>gi|21224861|ref|NP_630640.1| respiratory chain oxidoreductase [Streptomyces coelicolor A3(2)]
 gi|289767859|ref|ZP_06527237.1| respiratory chain oxidoreductase [Streptomyces lividans TK24]
 gi|4007677|emb|CAA22363.1| putative respiratory chain oxidoreductase [Streptomyces coelicolor
           A3(2)]
 gi|289698058|gb|EFD65487.1| respiratory chain oxidoreductase [Streptomyces lividans TK24]
          Length = 286

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 4/75 (5%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQE 111
           Y     +CI C  C   C  Q     +      G    +  +    +    C+YCG C E
Sbjct: 145 YVRDYGKCILCYKCVDACGDQWQNSFAISVAGRGFDARISVEQDGPLTDSACVYCGNCIE 204

Query: 112 ACPVDAIVEGPNFEF 126
            CP  A+     F+ 
Sbjct: 205 VCPTGALSFKSEFDM 219


>gi|87303125|ref|ZP_01085923.1| pyruvate flavodoxin oxidoreductase [Synechococcus sp. WH 5701]
 gi|87282292|gb|EAQ74252.1| pyruvate flavodoxin oxidoreductase [Synechococcus sp. WH 5701]
          Length = 1190

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 28/90 (31%), Gaps = 24/90 (26%)

Query: 58  NGEERCIACKLCEAICPAQAITIE----------------SGPRCHDGTRRTVRYDIDMI 101
             ++ C+ C  C  +CP  AI  +                +  R    +  +    +   
Sbjct: 696 WDDDICVQCGKCVMVCPHAAIRAKVVEPAALADAPEGFASTAARDPHWSGLSFTLQVAGE 755

Query: 102 KCIYCGLCQEACPVD--------AIVEGPN 123
            C  CGLC E CP          AI   P 
Sbjct: 756 DCTGCGLCVEVCPARDRTEPRHKAINMAPQ 785


>gi|326203038|ref|ZP_08192904.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium
           papyrosolvens DSM 2782]
 gi|325986684|gb|EGD47514.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium
           papyrosolvens DSM 2782]
          Length = 287

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 9/70 (12%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G     +    ++ CI C LCE  C   AITI    +          +      C YCG 
Sbjct: 152 GVKGAVKPNWNKDNCIYCGLCENACRHGAITINKTAKE---------FSYAASACKYCGR 202

Query: 109 CQEACPVDAI 118
           C + CP  A 
Sbjct: 203 CVKVCPKGAW 212



 Score = 33.9 bits (76), Expect = 8.3,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 21/58 (36%), Gaps = 6/58 (10%)

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG---PNFEFA 127
           C    +  E       G  +      +   CIYCGLC+ AC   AI        F +A
Sbjct: 139 CSNNCLKAEENDLGVKGAVKPNW---NKDNCIYCGLCENACRHGAITINKTAKEFSYA 193


>gi|212691873|ref|ZP_03300001.1| hypothetical protein BACDOR_01368 [Bacteroides dorei DSM 17855]
 gi|265756228|ref|ZP_06090557.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides sp.
           3_1_33FAA]
 gi|212665545|gb|EEB26117.1| hypothetical protein BACDOR_01368 [Bacteroides dorei DSM 17855]
 gi|263233819|gb|EEZ19428.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides sp.
           3_1_33FAA]
          Length = 1181

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 31/90 (34%), Gaps = 15/90 (16%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGP 84
           E+G+     RG  A     N  E CI C  C  +CP                A       
Sbjct: 667 EQGTAQYEKRGVAAFVPEWN-AENCIQCNKCAYVCPHASIRPFVLDAEEQKGANFETLKA 725

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                   T R  +D++ C+ CG C + CP
Sbjct: 726 VGKQFDGMTFRIQVDVLDCLGCGNCADVCP 755


>gi|92114243|ref|YP_574171.1| electron transport complex, RnfABCDGE type, B subunit
           [Chromohalobacter salexigens DSM 3043]
 gi|91797333|gb|ABE59472.1| electron transport complex, RnfABCDGE type, B subunit
           [Chromohalobacter salexigens DSM 3043]
          Length = 335

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 11/73 (15%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            CI C  C   CP  AI   +             + +   +C  C LC   CPVD I   
Sbjct: 83  ECIGCTKCIQACPVDAILGAAKQ----------MHTVIAGECTGCELCVAPCPVDCIDIL 132

Query: 122 PNFEF-ATETRQE 133
           P+ E+ A ETR +
Sbjct: 133 PHPEWVAAETRAQ 145



 Score = 38.2 bits (87), Expect = 0.39,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           I   +CI C  C +ACPVDAI
Sbjct: 79  IREAECIGCTKCIQACPVDAI 99


>gi|1709284|sp|P19543|NIFJ_ENTAG RecName: Full=Pyruvate-flavodoxin oxidoreductase
 gi|469077|emb|CAA55302.1| nifJ [Pantoea agglomerans]
 gi|1480137|emb|CAA68011.1| nifJ [Pantoea agglomerans]
          Length = 1173

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 30/96 (31%), Gaps = 16/96 (16%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHD 88
           TS   +   A+       ++C  C  C  ICP                A    S  R   
Sbjct: 670 TSAYEKRGVAINVPVWQTDKCTQCNQCAFICPHAAIRPVLISEEERQNAPAGFSAKRASG 729

Query: 89  GTRRTVRYDIDMIKCIYCGLCQEACPV--DAIVEGP 122
                 R  +  + C  CG C + CPV   A+   P
Sbjct: 730 TEDAWYRLAVSPLDCSGCGNCADVCPVKGKALSMQP 765


>gi|126439611|ref|YP_001058225.1| ferredoxin [Burkholderia pseudomallei 668]
 gi|126219104|gb|ABN82610.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           pseudomallei 668]
          Length = 290

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 27/81 (33%), Gaps = 10/81 (12%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
             +     E A       E+ CI C LC   CP  AI                 + I + 
Sbjct: 66  PLNQAHGVERARPVAFIDEQLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVVE 115

Query: 102 KCIYCGLCQEACPVDAIVEGP 122
            C  C LC   CPVD I   P
Sbjct: 116 LCTGCDLCVPPCPVDCIAMIP 136


>gi|323481228|gb|ADX80667.1| pyruvate:ferredoxin oxidoreductase [Enterococcus faecalis 62]
          Length = 1229

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 28/91 (30%), Gaps = 16/91 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96
            AL        RC  C  C  +CP  AI                              R 
Sbjct: 681 VALEVPEWISNRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 740

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125
            + +  C  CGLC EACP    A+V  P  E
Sbjct: 741 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 771


>gi|315161346|gb|EFU05363.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX0645]
          Length = 1243

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 28/91 (30%), Gaps = 16/91 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96
            AL        RC  C  C  +CP  AI                              R 
Sbjct: 695 VALEVPEWISNRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 754

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125
            + +  C  CGLC EACP    A+V  P  E
Sbjct: 755 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 785


>gi|312902871|ref|ZP_07762075.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX0635]
 gi|310633925|gb|EFQ17208.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX0635]
 gi|315577169|gb|EFU89360.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX0630]
          Length = 1243

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 28/91 (30%), Gaps = 16/91 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96
            AL        RC  C  C  +CP  AI                              R 
Sbjct: 695 VALEVPEWISNRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 754

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125
            + +  C  CGLC EACP    A+V  P  E
Sbjct: 755 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 785


>gi|307272712|ref|ZP_07553959.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX0855]
 gi|307276090|ref|ZP_07557223.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX2134]
 gi|306507420|gb|EFM76557.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX2134]
 gi|306510326|gb|EFM79349.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX0855]
          Length = 1243

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 28/91 (30%), Gaps = 16/91 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96
            AL        RC  C  C  +CP  AI                              R 
Sbjct: 695 VALEVPEWISNRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 754

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125
            + +  C  CGLC EACP    A+V  P  E
Sbjct: 755 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 785


>gi|295113334|emb|CBL31971.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric
           [Enterococcus sp. 7L76]
          Length = 1229

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 28/91 (30%), Gaps = 16/91 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96
            AL        RC  C  C  +CP  AI                              R 
Sbjct: 681 VALEVPEWISNRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 740

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125
            + +  C  CGLC EACP    A+V  P  E
Sbjct: 741 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 771


>gi|260913866|ref|ZP_05920340.1| electron transport complex [Pasteurella dagmatis ATCC 43325]
 gi|260631953|gb|EEX50130.1| electron transport complex [Pasteurella dagmatis ATCC 43325]
          Length = 197

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 25/79 (31%), Gaps = 10/79 (12%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
             +    G+ A       EE CI C  C   CP  AI   +             + I   
Sbjct: 93  PPATDVEGDPAPMVAFIDEEMCIGCTKCIQACPVDAIIGTNK----------AMHTIIPD 142

Query: 102 KCIYCGLCQEACPVDAIVE 120
            C  C LC   CP D I  
Sbjct: 143 LCTGCELCVPPCPTDCISM 161



 Score = 39.3 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 30/78 (38%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
           P  +         +   +CI       +  A+ + +E      +G    +   ID   CI
Sbjct: 56  PGCKPYAEAIANGDDITKCIPGGQTVIVNIAELMGVEPPATDVEGDPAPMVAFIDEEMCI 115

Query: 105 YCGLCQEACPVDAIVEGP 122
            C  C +ACPVDAI+   
Sbjct: 116 GCTKCIQACPVDAIIGTN 133


>gi|288930542|ref|YP_003434602.1| methyl-viologen-reducing hydrogenase subunit delta [Ferroglobus
           placidus DSM 10642]
 gi|288892790|gb|ADC64327.1| methyl-viologen-reducing hydrogenase delta subunit [Ferroglobus
           placidus DSM 10642]
          Length = 777

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 13/77 (16%)

Query: 47  FRGEHALRRY--PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
           F GE     Y     EE+CI C++CE +C   A+T E+               ID   C+
Sbjct: 558 FGGEAEFDPYNAYVNEEKCIGCRICEEVCNFNAVTFENKKA-----------KIDPNACV 606

Query: 105 YCGLCQEACPVDAIVEG 121
            CG+C  +CP DAI  G
Sbjct: 607 MCGVCAASCPADAIDLG 623



 Score = 33.9 bits (76), Expect = 8.3,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 26/83 (31%), Gaps = 8/83 (9%)

Query: 46  RFRGEHALRRYPNGEERCIAC-KLCEAICPAQAITIESGPRCHDGTRRTVRYD------- 97
            F+ +         E +C  C   C ++CP +                            
Sbjct: 226 NFKVKVRKHPRYVDENKCKGCIDDCSSVCPVEVPNEFDYTIGVRKAIYLPIPQSTPLYAA 285

Query: 98  IDMIKCIYCGLCQEACPVDAIVE 120
           ID   CI C LC++AC   A+  
Sbjct: 286 IDWEHCIGCRLCEKACEPKAVDF 308


>gi|257416474|ref|ZP_05593468.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Enterococcus
           faecalis AR01/DG]
 gi|257158302|gb|EEU88262.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Enterococcus
           faecalis ARO1/DG]
          Length = 1223

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 28/91 (30%), Gaps = 16/91 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96
            AL        RC  C  C  +CP  AI                              R 
Sbjct: 675 VALEVPEWISNRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 734

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125
            + +  C  CGLC EACP    A+V  P  E
Sbjct: 735 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 765


>gi|257090427|ref|ZP_05584788.1| pyruvate decarboxylase [Enterococcus faecalis CH188]
 gi|256999239|gb|EEU85759.1| pyruvate decarboxylase [Enterococcus faecalis CH188]
          Length = 1223

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 28/91 (30%), Gaps = 16/91 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96
            AL        RC  C  C  +CP  AI                              R 
Sbjct: 675 VALEVPEWISNRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 734

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125
            + +  C  CGLC EACP    A+V  P  E
Sbjct: 735 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 765


>gi|256963438|ref|ZP_05567609.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis
           HIP11704]
 gi|256953934|gb|EEU70566.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis
           HIP11704]
          Length = 1223

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 28/91 (30%), Gaps = 16/91 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96
            AL        RC  C  C  +CP  AI                              R 
Sbjct: 675 VALEVPEWISNRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 734

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125
            + +  C  CGLC EACP    A+V  P  E
Sbjct: 735 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 765


>gi|256619570|ref|ZP_05476416.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Enterococcus
           faecalis ATCC 4200]
 gi|256599097|gb|EEU18273.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Enterococcus
           faecalis ATCC 4200]
          Length = 1223

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 28/91 (30%), Gaps = 16/91 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96
            AL        RC  C  C  +CP  AI                              R 
Sbjct: 675 VALEVPEWISNRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 734

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125
            + +  C  CGLC EACP    A+V  P  E
Sbjct: 735 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 765


>gi|160935281|ref|ZP_02082663.1| hypothetical protein CLOBOL_00176 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441639|gb|EDP19339.1| hypothetical protein CLOBOL_00176 [Clostridium bolteae ATCC
           BAA-613]
          Length = 507

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQ 110
              +++CI C  C  +C  +AI I+  P                + DID  KC+ CG+C 
Sbjct: 148 HINDDKCIKCGRCADVCSYKAIIIQERPCAAACGMDAISTDENGKADIDYDKCVSCGMCL 207

Query: 111 EACPVDAI 118
             CP  AI
Sbjct: 208 VNCPFGAI 215



 Score = 39.3 bits (90), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 22/66 (33%), Gaps = 7/66 (10%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-------IDMIKCIYCGLCQEACPV 115
           C AC               + P      +  ++ D       I+  KCI CG C + C  
Sbjct: 107 CNACHEKRVFVTDGCQGCLAHPCEEVCPKDAIKLDRTNGRSHINDDKCIKCGRCADVCSY 166

Query: 116 DAIVEG 121
            AI+  
Sbjct: 167 KAIIIQ 172


>gi|331010114|gb|EGH90170.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 290

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 10/75 (13%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           RG    +     E  CI C  C   CP  AI   +           + + + + +C  C 
Sbjct: 76  RGAAPAQVAFIREAECIGCTKCIQACPVDAIVGAAK----------LMHTVIVDECTGCD 125

Query: 108 LCQEACPVDAIVEGP 122
           LC   CPVD I   P
Sbjct: 126 LCVAPCPVDCIEMHP 140


>gi|327479772|gb|AEA83082.1| electron transport complex protein RnfC [Pseudomonas stutzeri DSM
           4166]
          Length = 827

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 2/97 (2%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C  C   CP   +  +       G          +  CI CG C   CP   I    
Sbjct: 371 CIRCGECAEACPVS-LLPQQLHFFALGQEHEQLKAHHLFDCIECGACAYVCP-SNIPLVQ 428

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
            +  A    +EL   +++  ++  R+E    R    +
Sbjct: 429 YYRAAKAEIRELEQKQQKAEHSKQRFELRQERLRRAE 465


>gi|313157248|gb|EFR56678.1| pyruvate synthase [Alistipes sp. HGB5]
          Length = 1177

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 31/99 (31%), Gaps = 16/99 (16%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ-------------AITIESGPR 85
           E G+ +   RG           E CI C  C  +CP               A  +E    
Sbjct: 672 ENGTAAYEKRGIAVNVPEWK-IENCIQCNQCAYVCPHAVIRPFLATEAEAAASGVEWKQG 730

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACP--VDAIVEGP 122
             +      R  I  + C  C  C + CP    A+V  P
Sbjct: 731 LGETKDYKFRIQISPLDCTGCSNCVDVCPAKEKALVMKP 769


>gi|308051297|ref|YP_003914863.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferrimonas
           balearica DSM 9799]
 gi|307633487|gb|ADN77789.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferrimonas
           balearica DSM 9799]
          Length = 562

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 9/74 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++C  C  C A+CP++A+                        C+ CGLC+ ACP  AI
Sbjct: 426 DVDKCTLCMSCAALCPSRALMDGGDSPA---------LKFTEQACVQCGLCERACPEKAI 476

Query: 119 VEGPNFEFATETRQ 132
                 +   E RQ
Sbjct: 477 TLTSRIQLDREARQ 490


>gi|325678152|ref|ZP_08157782.1| electron transport complex, RnfABCDGE type, C subunit [Ruminococcus
           albus 8]
 gi|324110157|gb|EGC04343.1| electron transport complex, RnfABCDGE type, C subunit [Ruminococcus
           albus 8]
          Length = 421

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           G+  CI C  C   CPA  + +          +RT    +    CI CG C   CP
Sbjct: 343 GQTNCIRCGRCAKACPAGLMPMRIEKAVK-KRKRTELRRLRPDLCIGCGSCTYVCP 397



 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 18/51 (35%)

Query: 84  PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134
                G + +++       CI CG C +ACP   +            R EL
Sbjct: 328 KPLESGGKGSLKVVGGQTNCIRCGRCAKACPAGLMPMRIEKAVKKRKRTEL 378


>gi|261414556|ref|YP_003248239.1| nitrite and sulphite reductase 4Fe-4S region [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261371012|gb|ACX73757.1| nitrite and sulphite reductase 4Fe-4S region [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|302327419|gb|ADL26620.1| putative sulfite reductase [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 286

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 22/97 (22%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ++CI C LC  +C  +AI IE+     D             KC YCG C ++CP DA   
Sbjct: 163 DKCIGCGLCAKVCRKEAIKIENKKVIFDK-----------EKCNYCGRCYKSCPTDAWSH 211

Query: 121 GPNFEFA-----------TETRQELYYDKERLLNNGD 146
              +  +            ET      DK++LL+  D
Sbjct: 212 IHGYIVSFGGLFGNNINKGETIIPFVEDKQKLLDICD 248



 Score = 37.8 bits (86), Expect = 0.48,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 12/68 (17%)

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           C    +  E       G  +    +    KCI CGLC + C  +AI             +
Sbjct: 138 CQNNCLKAEENDVGIKGAIKVDWLE---DKCIGCGLCAKVCRKEAIKIEN---------K 185

Query: 133 ELYYDKER 140
           ++ +DKE+
Sbjct: 186 KVIFDKEK 193


>gi|288869697|ref|ZP_05975774.2| polyferredoxin protein FwdF [Methanobrevibacter smithii DSM 2374]
 gi|288861140|gb|EFC93438.1| polyferredoxin protein FwdF [Methanobrevibacter smithii DSM 2374]
          Length = 339

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 37/100 (37%), Gaps = 8/100 (8%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG----PRCHDGTRRTVRY 96
           G   P  RG   +         C+ C LC   CP  A+++           +     V  
Sbjct: 43  GPIVPIARGLIEMDLVSVTSNTCVLCGLCSVACPFDALSLTINGNDIKETGNYPVWEVES 102

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
           +I+   CIYCG C   CP D I+          +R++L  
Sbjct: 103 EINDDDCIYCGRCYSVCPRDTILFKREL----PSREDLVI 138



 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
             R +  +      E++C+ C +C  +CPA AI++ + P   +        ++D  KCIY
Sbjct: 131 PSREDLVIGEISVDEDKCVYCSICSEMCPAGAISLTNNPEFSNDNLNNTI-EVDTSKCIY 189

Query: 106 CGLCQEACPVDAI 118
           CG+C+ ACP DAI
Sbjct: 190 CGVCKRACPQDAI 202



 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++ CI C  C ++CP   I                   +D  KC+YC +C E CP  AI
Sbjct: 105 NDDDCIYCGRCYSVCPRDTILF-KRELPSREDLVIGEISVDEDKCVYCSICSEMCPAGAI 163

Query: 119 VEGPNFEFATET 130
               N EF+ + 
Sbjct: 164 SLTNNPEFSNDN 175



 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 4/85 (4%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDM 100
           P F  ++          +CI C +C+  CP  AI             +    +    I  
Sbjct: 169 PEFSNDNLNNTIEVDTSKCIYCGVCKRACPQDAIKAVCSTCMLQDQIKAPEINGTASILK 228

Query: 101 IKCIYCGLCQEACPVDAIVEGPNFE 125
             C+ C  C+E CPVD I     FE
Sbjct: 229 DGCVNCSWCKEVCPVDTINVTKPFE 253



 Score = 42.4 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 32/76 (42%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R     R+  +  +RC+ C +C  +CP  ++ +        G        +    C+ CG
Sbjct: 10  RSGEETRKLSHNNDRCVGCGICTDVCPTSSLRLGPIVPIARGLIEMDLVSVTSNTCVLCG 69

Query: 108 LCQEACPVDAIVEGPN 123
           LC  ACP DA+    N
Sbjct: 70  LCSVACPFDALSLTIN 85



 Score = 38.5 bits (88), Expect = 0.31,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 11/79 (13%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +  + +  F G   L        +  AC  C+ +CP  A+ I               
Sbjct: 241 CPVDTINVTKPFEGTLKLVETDESTCKGDACHACQDVCPCDAVEIIDNKA---------- 290

Query: 96  YDIDMIKCIYCGLCQEACP 114
             I++  C  CG C  ACP
Sbjct: 291 -TINLNYCNLCGACVNACP 308



 Score = 33.5 bits (75), Expect = 8.7,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+ C  C+ +CP   I +    +  +GT + V  D    K   C  CQ+ CP DA+    
Sbjct: 231 CVNCSWCKEVCPVDTINVT---KPFEGTLKLVETDESTCKGDACHACQDVCPCDAVEIID 287

Query: 123 N 123
           N
Sbjct: 288 N 288


>gi|198275821|ref|ZP_03208352.1| hypothetical protein BACPLE_01996 [Bacteroides plebeius DSM 17135]
 gi|198271450|gb|EDY95720.1| hypothetical protein BACPLE_01996 [Bacteroides plebeius DSM 17135]
          Length = 1185

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 27/81 (33%), Gaps = 15/81 (18%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG  A     N  E CI C  C  +CP                A               T
Sbjct: 676 RGVAAFVPEWN-PETCIQCNKCAYVCPHAAIRPFVLDAEEQAGANFPTLKAVGKQFDGMT 734

Query: 94  VRYDIDMIKCIYCGLCQEACP 114
            R  +D++ C+ CG C + CP
Sbjct: 735 FRVQVDVMDCLGCGNCADVCP 755



 Score = 33.9 bits (76), Expect = 7.4,   Method: Composition-based stats.
 Identities = 8/20 (40%), Positives = 9/20 (45%)

Query: 99  DMIKCIYCGLCQEACPVDAI 118
           +   CI C  C   CP  AI
Sbjct: 686 NPETCIQCNKCAYVCPHAAI 705


>gi|163758602|ref|ZP_02165689.1| putative dihydropyrimidine dehydrogenase [Hoeflea phototrophica
           DFL-43]
 gi|162283892|gb|EDQ34176.1| putative dihydropyrimidine dehydrogenase [Hoeflea phototrophica
           DFL-43]
          Length = 436

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 6/81 (7%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI C  C       A    S             +++   +C+ 
Sbjct: 330 QYLNLNYVTKAKIDQDLCIKCGRCHI-----ACEDTSHQAITSMVDGARHFEVMDDECVG 384

Query: 106 CGLCQEACPV-DAIVEGPNFE 125
           C LC   CPV D I      E
Sbjct: 385 CNLCVNVCPVDDCITMVQMTE 405


>gi|146281594|ref|YP_001171747.1| electron transport complex protein RnfC [Pseudomonas stutzeri
           A1501]
 gi|145569799|gb|ABP78905.1| electron transport complex protein rnfC [Pseudomonas stutzeri
           A1501]
          Length = 827

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 2/97 (2%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C  C   CP   +  +       G          +  CI CG C   CP   I    
Sbjct: 371 CIRCGECAEACPVS-LLPQQLHFFALGQEHEQLKAHHLFDCIECGACAYVCP-SNIPLVQ 428

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
            +  A    +EL   +++  ++  R+E    R    +
Sbjct: 429 YYRAAKAEIRELEQKQQKAEHSKQRFELRQERLRRAE 465


>gi|56387326|gb|AAV86075.1| uptake hydrogenase [Clostridium saccharoperbutylacetonicum ATCC
           27021]
          Length = 624

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 27/70 (38%), Gaps = 10/70 (14%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             L+        C  C  C  +CP  AI+           +    + ID  KCI CG C 
Sbjct: 564 QKLKTILIDPSMCKGCSKCSKVCPVGAISG----------KIKEPFVIDQNKCIKCGACL 613

Query: 111 EACPVDAIVE 120
           E CP  AI E
Sbjct: 614 ETCPFKAIKE 623


>gi|89098845|ref|ZP_01171726.1| YjgC [Bacillus sp. NRRL B-14911]
 gi|89086521|gb|EAR65641.1| YjgC [Bacillus sp. NRRL B-14911]
          Length = 989

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 33/99 (33%), Gaps = 9/99 (9%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            ++         + PF +          ++   Y    ++CI C  C   C    +T   
Sbjct: 119 TVKEM--KINHQSVPFAQKPYPAD----NSHPFYRYDPDQCILCGRCVEACQDVQVTETL 172

Query: 83  GPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPVDAI 118
                    R +  +   I+   C+ CG C   CP +A+
Sbjct: 173 TIDWEREKPRVIWDNDVPINESSCVSCGHCSTVCPCNAM 211



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 22/69 (31%), Gaps = 9/69 (13%)

Query: 54  RRYPNGEERCIAC----KLCEAICPA-----QAITIESGPRCHDGTRRTVRYDIDMIKCI 104
           R   N E  C  C      CE             ++    + +        Y  D  +CI
Sbjct: 95  RILTNHELYCTVCDYNNGGCEVHNTVKEMKINHQSVPFAQKPYPADNSHPFYRYDPDQCI 154

Query: 105 YCGLCQEAC 113
            CG C EAC
Sbjct: 155 LCGRCVEAC 163


>gi|120553869|ref|YP_958220.1| electron transport complex, RnfABCDGE type, B subunit [Marinobacter
           aquaeolei VT8]
 gi|120323718|gb|ABM18033.1| electron transport complex, RnfABCDGE type, B subunit [Marinobacter
           aquaeolei VT8]
          Length = 192

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 28/82 (34%), Gaps = 10/82 (12%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E          E A R     E+ CI C  C   CP  AI   +             + +
Sbjct: 92  EPQPLDAEHGVEQAKRVAVIREDECIGCTKCIQACPVDAILGAAK----------HMHTV 141

Query: 99  DMIKCIYCGLCQEACPVDAIVE 120
              +C  C LC E CPVD I  
Sbjct: 142 IESECTGCDLCVEPCPVDCIDM 163


>gi|134296514|ref|YP_001120249.1| ferredoxin [Burkholderia vietnamiensis G4]
 gi|134139671|gb|ABO55414.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           vietnamiensis G4]
          Length = 313

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 22/66 (33%), Gaps = 10/66 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C LC   CP  AI                 + I    C  C LC   CPVD
Sbjct: 104 FIDESLCIGCTLCLQACPVDAIIGAPKQ----------MHTIIEPLCTGCDLCVAPCPVD 153

Query: 117 AIVEGP 122
            I   P
Sbjct: 154 CIAMVP 159


>gi|308049766|ref|YP_003913332.1| hydrogenase, Fe-only [Ferrimonas balearica DSM 9799]
 gi|307631956|gb|ADN76258.1| hydrogenase, Fe-only [Ferrimonas balearica DSM 9799]
          Length = 410

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 10/61 (16%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           +C  C  C+  CP  AI   SG            + +D  KC+ CG C   CP DAI E 
Sbjct: 21  KCKGCDACKKFCPTGAIEGASGAA----------HRVDHDKCVGCGQCMINCPFDAIEET 70

Query: 122 P 122
            
Sbjct: 71  H 71



 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 97  DIDMIKCIYCGLCQEACPVDAI 118
           +I   KC  C  C++ CP  AI
Sbjct: 16  EIQAAKCKGCDACKKFCPTGAI 37


>gi|300869677|ref|YP_003784548.1| Fe-hydrogenase large subunit family protein [Brachyspira pilosicoli
           95/1000]
 gi|300687376|gb|ADK30047.1| Fe-hydrogenase large subunit family protein [Brachyspira pilosicoli
           95/1000]
          Length = 490

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 6/69 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGT------RRTVRYDIDMIKCIYCGLCQ 110
                +CI C LC   CP  AI     P                +  ID  KCI+CG C 
Sbjct: 144 YIDSSKCINCGLCLKNCPYHAIIYIPVPCEESCPVGAINKNEQGKEVIDYHKCIFCGNCM 203

Query: 111 EACPVDAIV 119
             CP  A++
Sbjct: 204 RECPFSAMM 212



 Score = 40.1 bits (92), Expect = 0.10,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 28/62 (45%), Gaps = 12/62 (19%)

Query: 63  CIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           C AC  + C   CP  AITI    R            ID  KCI CGLC + CP  AI+ 
Sbjct: 118 CQACLARPCMMNCPKNAITILDEKRA----------YIDSSKCINCGLCLKNCPYHAIIY 167

Query: 121 GP 122
            P
Sbjct: 168 IP 169


>gi|254883858|ref|ZP_05256568.1| pyruvate-flavodoxin oxidoreductase [Bacteroides sp. 4_3_47FAA]
 gi|254836651|gb|EET16960.1| pyruvate-flavodoxin oxidoreductase [Bacteroides sp. 4_3_47FAA]
          Length = 1163

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 31/90 (34%), Gaps = 15/90 (16%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGP 84
           E+G+     RG  A     N  E CI C  C  +CP                A       
Sbjct: 667 EQGTAQYEKRGVAAFVPEWN-AENCIQCNKCAYVCPHASIRPFVLDAEEQKGADFETLKA 725

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                   T R  +D++ C+ CG C + CP
Sbjct: 726 VGKQFDGMTFRIQVDVLDCLGCGNCADVCP 755


>gi|194289253|ref|YP_002005160.1| ferredoxin [Cupriavidus taiwanensis LMG 19424]
 gi|193223088|emb|CAQ69093.1| FERREDOXIN [4FE-4S] PROTEIN [Cupriavidus taiwanensis LMG 19424]
          Length = 273

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 26/84 (30%), Gaps = 10/84 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E     P    E         E  CI C LC   CP  AI   +             + +
Sbjct: 64  EPLPLDPERGTEQPRAVARIDESLCIGCTLCIQACPVDAIAGAAKQ----------MHTV 113

Query: 99  DMIKCIYCGLCQEACPVDAIVEGP 122
               C  C LC   CPVD I   P
Sbjct: 114 IPDLCTGCDLCVPPCPVDCIDMVP 137


>gi|51246738|ref|YP_066622.1| pyruvate-flavodoxin oxidoreductase [Desulfotalea psychrophila
           LSv54]
 gi|50877775|emb|CAG37615.1| probable pyruvate-flavodoxin oxidoreductase [Desulfotalea
           psychrophila LSv54]
          Length = 1180

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 31/93 (33%), Gaps = 17/93 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTV--------------RYDIDMIKCIYC 106
           E CI C  C  +CP  AI I+      +                       +    C  C
Sbjct: 691 ENCIQCGQCSLVCPHAAIRIKVAQNLDNAPAGVKSLDAVGKNFKGSKFVLQVFTEDCCGC 750

Query: 107 GLCQEACP--VDAIVEGPN-FEFATETRQELYY 136
            LC +ACP    A+    N  E A   R E+ Y
Sbjct: 751 TLCVDACPAKTKALKMIKNSEELAVVNRPEVQY 783


>gi|121613446|ref|YP_001001125.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|167006018|ref|ZP_02271776.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|87249626|gb|EAQ72585.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Campylobacter jejuni
           subsp. jejuni 81-176]
          Length = 1186

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 43/133 (32%), Gaps = 30/133 (22%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA------------------QAIT 79
           FE G+T    RG   +         CI C  C ++CP                       
Sbjct: 668 FEHGTTEYEKRGVGVMVPRWIE-ANCIQCNQCASVCPHAVIRPFLINDEEMANAPRGVKD 726

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV--DAIVEGP--------NFEFATE 129
                +   G + + +  +  + C  C LC   CP    ++V  P          E A  
Sbjct: 727 HALEAKGTKGEKLSFKIQVSPLDCTGCELCVHECPTKEKSLVMVPLQEEMDFGEQENADY 786

Query: 130 TRQELYYDKERLL 142
             +E+ Y K+ +L
Sbjct: 787 LFKEITY-KDDIL 798


>gi|332993969|gb|AEF04024.1| electron transport complex protein RnfC [Alteromonas sp. SN2]
          Length = 866

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 36/115 (31%), Gaps = 3/115 (2%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P  K +       +  L    N E  CI C  C   CP   +  +              
Sbjct: 358 IPVVKTTNCLLVPSKKELV-DDNAERPCIRCSACADACPVSLLPQQMFWHAKAKE-YDKA 415

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWES 150
            D D+  CI CG C   CP   I     +  A    +    +K +      R+E+
Sbjct: 416 EDYDLFDCIECGACAYVCP-SEIPLVHYYRQAKSEIRLQRDEKNKAEKAKQRFEA 469


>gi|310828875|ref|YP_003961232.1| hypothetical protein ELI_3307 [Eubacterium limosum KIST612]
 gi|308740609|gb|ADO38269.1| hypothetical protein ELI_3307 [Eubacterium limosum KIST612]
          Length = 586

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 38/97 (39%), Gaps = 15/97 (15%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
             LRY F+ +   +    K +         AL  Y   EE+C+ C  C   CP +AI+  
Sbjct: 502 TTLRY-FRNEYEDHIYKHKCTAHSC----KALITYSIDEEKCVGCTRCAKNCPVEAISGA 556

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                         + ID  KCI CG C   C  DA+
Sbjct: 557 PKK----------VHVIDQEKCIKCGKCASVCKFDAV 583


>gi|170768728|ref|ZP_02903181.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           albertii TW07627]
 gi|170122276|gb|EDS91207.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           albertii TW07627]
          Length = 192

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   +             + +    C  C LC + CP   I
Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RSMHTVMSELCTGCNLCVDPCPTQCI 162

Query: 119 VEGPNFEFATETRQEL 134
              P  E     + +L
Sbjct: 163 SLQPVAETPDSWKWDL 178



 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C  C +ACPVDAI
Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132


>gi|154421999|ref|XP_001584012.1| TvhydB protein [Trichomonas vaginalis G3]
 gi|121918257|gb|EAY23026.1| TvhydB protein, putative [Trichomonas vaginalis G3]
          Length = 470

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 22/70 (31%), Gaps = 6/70 (8%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK------CIYCGLCQEA 112
              +CI C+ C   C   A          +  ++         K      CI CG C   
Sbjct: 25  DMHKCINCQACVRACKNVAGQSVLKSVKINEGKKKGVVQTVTGKLLAETNCIGCGQCTLV 84

Query: 113 CPVDAIVEGP 122
           CP  AI E  
Sbjct: 85  CPTQAIHEKD 94


>gi|121534265|ref|ZP_01666089.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Thermosinus carboxydivorans Nor1]
 gi|121307035|gb|EAX47953.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Thermosinus carboxydivorans Nor1]
          Length = 1173

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 29/96 (30%), Gaps = 16/96 (16%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHD 88
            +   +   A+       ++CI C  C  +CP                A +  +      
Sbjct: 672 ITAWEKRGIAIEVPVWQADKCIQCNQCSFVCPHAVIRPLLINSDELKNAPSGFTTKEAIG 731

Query: 89  GTRRTVRYDIDMIKCIYCGLCQEACP--VDAIVEGP 122
                    I  + C  CG C + CP    A++  P
Sbjct: 732 YPGLFFHLAISALDCTGCGNCVDVCPAKEKALIMKP 767


>gi|83718953|ref|YP_441525.1| ferredoxin [Burkholderia thailandensis E264]
 gi|257139787|ref|ZP_05588049.1| ferredoxin [Burkholderia thailandensis E264]
 gi|83652778|gb|ABC36841.1| iron-sulfur cluster-binding protein [Burkholderia thailandensis
           E264]
          Length = 282

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 23/64 (35%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ CI C LC   CP  AI                 + I    C  C LC   CPVD I
Sbjct: 83  DEQLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVAELCTGCDLCVPPCPVDCI 132

Query: 119 VEGP 122
              P
Sbjct: 133 AMIP 136



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/21 (66%), Positives = 15/21 (71%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C LC +ACPVDAI
Sbjct: 82  IDEQLCIGCTLCMQACPVDAI 102


>gi|57238499|ref|YP_179630.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Campylobacter jejuni
           RM1221]
 gi|157415700|ref|YP_001482956.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|57167303|gb|AAW36082.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Campylobacter jejuni
           RM1221]
 gi|157386664|gb|ABV52979.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|307748341|gb|ADN91611.1| Pyruvate-flavodoxin oxidoreductase [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315058930|gb|ADT73259.1| Pyruvate-flavodoxin oxidoreductase [Campylobacter jejuni subsp.
           jejuni S3]
          Length = 1186

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 43/133 (32%), Gaps = 30/133 (22%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA------------------QAIT 79
           FE G+T    RG   +         CI C  C ++CP                       
Sbjct: 668 FEHGTTEYEKRGVGVMVPRWIE-ANCIQCNQCASVCPHAVIRPFLINDEEMANAPRGVKD 726

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV--DAIVEGP--------NFEFATE 129
                +   G + + +  +  + C  C LC   CP    ++V  P          E A  
Sbjct: 727 HALEAKGTKGEKLSFKIQVSPLDCTGCELCVHECPTKEKSLVMVPLQEEMDFGEQENADY 786

Query: 130 TRQELYYDKERLL 142
             +E+ Y K+ +L
Sbjct: 787 LFKEITY-KDDIL 798


>gi|57169058|ref|ZP_00368185.1| pyruvate ferredoxin/flavodoxin oxidoreductase family protein
           [Campylobacter coli RM2228]
 gi|305432267|ref|ZP_07401430.1| pyruvate:ferredoxin oxidoreductase [Campylobacter coli JV20]
 gi|57019516|gb|EAL56207.1| pyruvate ferredoxin/flavodoxin oxidoreductase family protein
           [Campylobacter coli RM2228]
 gi|304444615|gb|EFM37265.1| pyruvate:ferredoxin oxidoreductase [Campylobacter coli JV20]
          Length = 1186

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/147 (19%), Positives = 48/147 (32%), Gaps = 30/147 (20%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA------------------QAIT 79
           FE G+T    RG   +         CI C  C ++CP                       
Sbjct: 668 FEHGTTEYEKRGVGVMVPRWIE-ANCIQCNQCASVCPHAVIRPFLINDEEMAKAPRGVKD 726

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV--DAIVEGP--------NFEFATE 129
                +   G + + +  +  + C  C LC   CP    ++V  P          E A  
Sbjct: 727 HALEAKGTKGEKLSFKIQVSPLDCTGCELCVHECPTKEKSLVMVPLQEEMDFGEQENADY 786

Query: 130 TRQELYYDKERLLNNGDRWESEIVRNI 156
             +E+ Y K+ +LN      ++  + +
Sbjct: 787 LFKEITY-KDDILNKESTKGAQFAQPL 812


>gi|15831591|ref|NP_310364.1| electron transport complex protein RnfB [Escherichia coli O157:H7
           str. Sakai]
 gi|74312045|ref|YP_310464.1| electron transport complex protein RnfB [Shigella sonnei Ss046]
 gi|91210841|ref|YP_540827.1| electron transport complex protein RnfB [Escherichia coli UTI89]
 gi|117623814|ref|YP_852727.1| electron transport complex protein RnfB [Escherichia coli APEC O1]
 gi|157157455|ref|YP_001462917.1| electron transport complex protein RnfB [Escherichia coli E24377A]
 gi|168750558|ref|ZP_02775580.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. EC4113]
 gi|168757456|ref|ZP_02782463.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. EC4401]
 gi|168763668|ref|ZP_02788675.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. EC4501]
 gi|168771170|ref|ZP_02796177.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. EC4486]
 gi|168775858|ref|ZP_02800865.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. EC4196]
 gi|168783451|ref|ZP_02808458.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. EC4076]
 gi|168789465|ref|ZP_02814472.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. EC869]
 gi|168800888|ref|ZP_02825895.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. EC508]
 gi|170682878|ref|YP_001743626.1| electron transport complex protein RnfB [Escherichia coli SMS-3-5]
 gi|191165916|ref|ZP_03027753.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli B7A]
 gi|191173438|ref|ZP_03034966.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli F11]
 gi|193064973|ref|ZP_03046049.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli E22]
 gi|194425888|ref|ZP_03058444.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli B171]
 gi|195939017|ref|ZP_03084399.1| electron transport complex protein RnfB [Escherichia coli O157:H7
           str. EC4024]
 gi|208810550|ref|ZP_03252426.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. EC4206]
 gi|208816778|ref|ZP_03257898.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. EC4045]
 gi|208820538|ref|ZP_03260858.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. EC4042]
 gi|209397589|ref|YP_002270698.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. EC4115]
 gi|209918941|ref|YP_002293025.1| electron transport complex protein RnfB [Escherichia coli SE11]
 gi|217328786|ref|ZP_03444867.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. TW14588]
 gi|218558499|ref|YP_002391412.1| electron transport complex protein RnfB [Escherichia coli S88]
 gi|218695191|ref|YP_002402858.1| electron transport complex protein RnfB [Escherichia coli 55989]
 gi|218699804|ref|YP_002407433.1| electron transport complex protein RnfB [Escherichia coli IAI39]
 gi|237705571|ref|ZP_04536052.1| electron transport complex protein rnfB [Escherichia sp. 3_2_53FAA]
 gi|254793245|ref|YP_003078082.1| electron transport complex protein RnfB [Escherichia coli O157:H7
           str. TW14359]
 gi|260843934|ref|YP_003221712.1| putative iron-sulfur protein [Escherichia coli O103:H2 str. 12009]
 gi|261227927|ref|ZP_05942208.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261258338|ref|ZP_05950871.1| putative iron-sulfur protein [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291282760|ref|YP_003499578.1| Electron transport complex protein rnfB [Escherichia coli O55:H7
           str. CB9615]
 gi|293414945|ref|ZP_06657588.1| electron transport complex protein rnfB [Escherichia coli B185]
 gi|293446003|ref|ZP_06662425.1| electron transport complex protein RnfB [Escherichia coli B088]
 gi|300821501|ref|ZP_07101648.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 119-7]
 gi|300907219|ref|ZP_07124881.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 84-1]
 gi|300927477|ref|ZP_07143190.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 182-1]
 gi|300990136|ref|ZP_07179143.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 200-1]
 gi|301303140|ref|ZP_07209266.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 124-1]
 gi|301329556|ref|ZP_07222339.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 78-1]
 gi|306813408|ref|ZP_07447598.1| electron transport complex protein RnfB [Escherichia coli NC101]
 gi|309793393|ref|ZP_07687820.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 145-7]
 gi|331653023|ref|ZP_08354028.1| electron transport complex protein RnfB [Escherichia coli M718]
 gi|331657597|ref|ZP_08358559.1| electron transport complex protein RnfB [Escherichia coli TA206]
 gi|331668305|ref|ZP_08369153.1| electron transport complex protein RnfB [Escherichia coli TA271]
 gi|331673197|ref|ZP_08373965.1| electron transport complex protein RnfB [Escherichia coli TA280]
 gi|331677493|ref|ZP_08378168.1| electron transport complex protein RnfB [Escherichia coli H591]
 gi|331683135|ref|ZP_08383736.1| electron transport complex protein RnfB [Escherichia coli H299]
 gi|17368140|sp|P58323|RNFB_ECO57 RecName: Full=Electron transport complex protein rnfB
 gi|123266074|sp|Q1RBG8|RNFB_ECOUT RecName: Full=Electron transport complex protein rnfB
 gi|123759604|sp|Q3Z1Y3|RNFB_SHISS RecName: Full=Electron transport complex protein rnfB
 gi|166225082|sp|A1ABH3|RNFB_ECOK1 RecName: Full=Electron transport complex protein rnfB
 gi|166991041|sp|A7ZM88|RNFB_ECO24 RecName: Full=Electron transport complex protein rnfB
 gi|226735411|sp|B7M9Y2|RNFB_ECO45 RecName: Full=Electron transport complex protein rnfB
 gi|226735412|sp|B5Z462|RNFB_ECO5E RecName: Full=Electron transport complex protein rnfB
 gi|226735413|sp|B7NU05|RNFB_ECO7I RecName: Full=Electron transport complex protein rnfB
 gi|226735417|sp|B6IB63|RNFB_ECOSE RecName: Full=Electron transport complex protein rnfB
 gi|226735418|sp|B1LEQ8|RNFB_ECOSM RecName: Full=Electron transport complex protein rnfB
 gi|254807924|sp|B7L5I1|RNFB_ECO55 RecName: Full=Electron transport complex protein rnfB
 gi|13361804|dbj|BAB35760.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
 gi|73855522|gb|AAZ88229.1| conserved hypothetical protein [Shigella sonnei Ss046]
 gi|91072415|gb|ABE07296.1| electron transport complex protein RnfB [Escherichia coli UTI89]
 gi|115512938|gb|ABJ01013.1| electron transport complex protein RnfB [Escherichia coli APEC O1]
 gi|157079485|gb|ABV19193.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli E24377A]
 gi|170520596|gb|ACB18774.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli SMS-3-5]
 gi|187768706|gb|EDU32550.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. EC4196]
 gi|188015258|gb|EDU53380.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. EC4113]
 gi|188999203|gb|EDU68189.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. EC4076]
 gi|189355528|gb|EDU73947.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. EC4401]
 gi|189359994|gb|EDU78413.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. EC4486]
 gi|189366182|gb|EDU84598.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. EC4501]
 gi|189370933|gb|EDU89349.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. EC869]
 gi|189376873|gb|EDU95289.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. EC508]
 gi|190904047|gb|EDV63759.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli B7A]
 gi|190906280|gb|EDV65891.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli F11]
 gi|192927460|gb|EDV82078.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli E22]
 gi|194415943|gb|EDX32209.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli B171]
 gi|208725066|gb|EDZ74773.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. EC4206]
 gi|208731121|gb|EDZ79810.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. EC4045]
 gi|208740661|gb|EDZ88343.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. EC4042]
 gi|209158989|gb|ACI36422.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. EC4115]
 gi|209769658|gb|ACI83141.1| hypothetical protein ECs2337 [Escherichia coli]
 gi|209769660|gb|ACI83142.1| hypothetical protein ECs2337 [Escherichia coli]
 gi|209769662|gb|ACI83143.1| hypothetical protein ECs2337 [Escherichia coli]
 gi|209769664|gb|ACI83144.1| hypothetical protein ECs2337 [Escherichia coli]
 gi|209769666|gb|ACI83145.1| hypothetical protein ECs2337 [Escherichia coli]
 gi|209912200|dbj|BAG77274.1| conserved hypothetical protein [Escherichia coli SE11]
 gi|217318133|gb|EEC26560.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli O157:H7 str. TW14588]
 gi|218351923|emb|CAU97648.1| putative iron-sulfur protein [Escherichia coli 55989]
 gi|218365268|emb|CAR02989.1| putative iron-sulfur protein [Escherichia coli S88]
 gi|218369790|emb|CAR17561.1| putative iron-sulfur protein [Escherichia coli IAI39]
 gi|222033387|emb|CAP76128.1| electron transport complex protein rnfB [Escherichia coli LF82]
 gi|226900328|gb|EEH86587.1| electron transport complex protein rnfB [Escherichia sp. 3_2_53FAA]
 gi|254592645|gb|ACT72006.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Escherichia coli O157:H7 str. TW14359]
 gi|257759081|dbj|BAI30578.1| predicted iron-sulfur protein [Escherichia coli O103:H2 str. 12009]
 gi|284921552|emb|CBG34624.1| electron transport complex protein [Escherichia coli 042]
 gi|290762633|gb|ADD56594.1| Electron transport complex protein rnfB [Escherichia coli O55:H7
           str. CB9615]
 gi|291322833|gb|EFE62261.1| electron transport complex protein RnfB [Escherichia coli B088]
 gi|291432593|gb|EFF05572.1| electron transport complex protein rnfB [Escherichia coli B185]
 gi|294492581|gb|ADE91337.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli IHE3034]
 gi|300305771|gb|EFJ60291.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 200-1]
 gi|300401023|gb|EFJ84561.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 84-1]
 gi|300416581|gb|EFJ99891.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 182-1]
 gi|300526004|gb|EFK47073.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 119-7]
 gi|300841549|gb|EFK69309.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 124-1]
 gi|300844325|gb|EFK72085.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 78-1]
 gi|305853153|gb|EFM53593.1| electron transport complex protein RnfB [Escherichia coli NC101]
 gi|307626886|gb|ADN71190.1| electron transport complex protein RnfB [Escherichia coli UM146]
 gi|308122980|gb|EFO60242.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 145-7]
 gi|312946228|gb|ADR27055.1| electron transport complex protein RnfB [Escherichia coli O83:H1
           str. NRG 857C]
 gi|315257572|gb|EFU37540.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 85-1]
 gi|315286323|gb|EFU45759.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 110-3]
 gi|315297364|gb|EFU56644.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 16-3]
 gi|320174165|gb|EFW49330.1| Electron transport complex protein RnfB [Shigella dysenteriae CDC
           74-1112]
 gi|320186300|gb|EFW61036.1| Electron transport complex protein RnfB [Shigella flexneri CDC
           796-83]
 gi|320188314|gb|EFW62976.1| Electron transport complex protein RnfB [Escherichia coli O157:H7
           str. EC1212]
 gi|320195474|gb|EFW70099.1| Electron transport complex protein RnfB [Escherichia coli
           WV_060327]
 gi|320197811|gb|EFW72419.1| Electron transport complex protein RnfB [Escherichia coli EC4100B]
 gi|320647299|gb|EFX16107.1| electron transport complex protein RnfB [Escherichia coli O157:H-
           str. 493-89]
 gi|320652593|gb|EFX20862.1| electron transport complex protein RnfB [Escherichia coli O157:H-
           str. H 2687]
 gi|320653113|gb|EFX21307.1| electron transport complex protein RnfB [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|323163523|gb|EFZ49349.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli E128010]
 gi|323169934|gb|EFZ55590.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli LT-68]
 gi|323187053|gb|EFZ72369.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli RN587/1]
 gi|323948000|gb|EGB43993.1| electron transporter [Escherichia coli H120]
 gi|323952613|gb|EGB48485.1| electron transporter [Escherichia coli H252]
 gi|323956693|gb|EGB52429.1| electron transporter [Escherichia coli H263]
 gi|324006985|gb|EGB76204.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 57-2]
 gi|324014760|gb|EGB83979.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 60-1]
 gi|324019500|gb|EGB88719.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 117-3]
 gi|324119384|gb|EGC13271.1| electron transporter [Escherichia coli E1167]
 gi|326341994|gb|EGD65775.1| Electron transport complex protein RnfB [Escherichia coli O157:H7
           str. 1044]
 gi|326343545|gb|EGD67307.1| Electron transport complex protein RnfB [Escherichia coli O157:H7
           str. 1125]
 gi|331049121|gb|EGI21193.1| electron transport complex protein RnfB [Escherichia coli M718]
 gi|331055845|gb|EGI27854.1| electron transport complex protein RnfB [Escherichia coli TA206]
 gi|331063499|gb|EGI35410.1| electron transport complex protein RnfB [Escherichia coli TA271]
 gi|331069395|gb|EGI40782.1| electron transport complex protein RnfB [Escherichia coli TA280]
 gi|331073953|gb|EGI45273.1| electron transport complex protein RnfB [Escherichia coli H591]
 gi|331079350|gb|EGI50547.1| electron transport complex protein RnfB [Escherichia coli H299]
 gi|332096075|gb|EGJ01080.1| electron transport complex, RnfABCDGE type, B subunit [Shigella
           boydii 3594-74]
 gi|333005284|gb|EGK24804.1| electron transport complex, RnfABCDGE type, B subunit [Shigella
           flexneri VA-6]
          Length = 192

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   +             + +    C  C LC + CP   I
Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTHCI 162

Query: 119 VEGPNFEFATETRQEL 134
              P  E     + +L
Sbjct: 163 SLQPVAETPDSWKWDL 178



 Score = 35.5 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C  C +ACPVDAI
Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132


>gi|304379496|ref|ZP_07362231.1| NAD-dependent formate dehydrogenase [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|304342028|gb|EFM07932.1| NAD-dependent formate dehydrogenase [Staphylococcus aureus subsp.
           aureus ATCC BAA-39]
 gi|320140151|gb|EFW32010.1| formate dehydrogenase, alpha subunit [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320143421|gb|EFW35202.1| formate dehydrogenase, alpha subunit [Staphylococcus aureus subsp.
           aureus MRSA177]
          Length = 1012

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 13/96 (13%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P+EK               Y     +CI C  C   C    +             R +  
Sbjct: 159 PYEKDYGP----------FYRYDPNQCILCGRCVEACQDIEVNETIRIDWDREHPRVIWD 208

Query: 97  D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           +   I+   C+ CG C   CP +A++E      A  
Sbjct: 209 NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGY 244



 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 17/68 (25%), Gaps = 8/68 (11%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105
           R        C  C      CE      A                      Y  D  +CI 
Sbjct: 118 RILEKHMLYCTVCDYNNGDCEIHNTMDAWGLQHQTYEYKEKPYEKDYGPFYRYDPNQCIL 177

Query: 106 CGLCQEAC 113
           CG C EAC
Sbjct: 178 CGRCVEAC 185


>gi|303242026|ref|ZP_07328518.1| Cobyrinic acid ac-diamide synthase [Acetivibrio cellulolyticus CD2]
 gi|302590444|gb|EFL60200.1| Cobyrinic acid ac-diamide synthase [Acetivibrio cellulolyticus CD2]
          Length = 290

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 21/105 (20%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + CI C +C+  C   +I  E              + +  +KC  CG C  ACP  AI
Sbjct: 64  DPDLCIKCGICKDTCRFDSINDE--------------FKMIPMKCEGCGACVLACPQKAI 109

Query: 119 VE----GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
                       +  +R    +    LL+ G     ++V  +  +
Sbjct: 110 HLEEVKTGELYISKTSRGTFSH---ALLDIGAEGSGKLVTEVRKN 151


>gi|297571802|ref|YP_003697576.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Arcanobacterium haemolyticum DSM 20595]
 gi|296932149|gb|ADH92957.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Arcanobacterium haemolyticum DSM 20595]
          Length = 291

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 21/56 (37%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C +C   CP  A+ IE             R    +  C  C  C + CPV A+
Sbjct: 166 CTMCGVCVKACPHDALAIEPAKENSTSRMAGSRLIYAVDACRGCNRCIDLCPVSAL 221



 Score = 35.1 bits (79), Expect = 3.0,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 103 CIYCGLCQEACPVDAIVEGPNFEFAT 128
           C  CG+C +ACP DA+   P  E +T
Sbjct: 166 CTMCGVCVKACPHDALAIEPAKENST 191


>gi|237722431|ref|ZP_04552912.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_2_4]
 gi|229448241|gb|EEO54032.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_2_4]
          Length = 588

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 5/89 (5%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVR 95
           PF  G  SPR R   A        ++CI C+ CE++C   Q +      R    T     
Sbjct: 131 PFNGGELSPRKREITA--SIVRNMDKCIFCRRCESVCNDVQTVGALGAIRRGFNTTIAPA 188

Query: 96  YDIDM--IKCIYCGLCQEACPVDAIVEGP 122
           +D  M   +C YCG C   CPV A+ E  
Sbjct: 189 FDRMMTESECTYCGQCVAVCPVGALTERD 217



 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 5/67 (7%)

Query: 52  ALRRYPNGEERCIACKLCEAICPA-----QAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
            L  +PN    C  C  CE    A     + +    G         T     +M KCI+C
Sbjct: 99  ILSDHPNDCLTCPKCGNCELQTLALRFNIREMPFNGGELSPRKREITASIVRNMDKCIFC 158

Query: 107 GLCQEAC 113
             C+  C
Sbjct: 159 RRCESVC 165


>gi|222445075|ref|ZP_03607590.1| hypothetical protein METSMIALI_00692 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434640|gb|EEE41805.1| hypothetical protein METSMIALI_00692 [Methanobrevibacter smithii
           DSM 2375]
          Length = 339

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 37/100 (37%), Gaps = 8/100 (8%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG----PRCHDGTRRTVRY 96
           G   P  RG   +         C+ C LC   CP  A+++           +     V  
Sbjct: 43  GPIVPIARGLIEMDLVSVTSNTCVLCGLCSVACPFDALSLTINGNDIKETGNYPVWEVES 102

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
           +I+   CIYCG C   CP D I+          +R++L  
Sbjct: 103 EINDDDCIYCGRCYSVCPRDTILFKREL----PSREDLVI 138



 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
             R +  +      E++C+ C +C  +CPA AI++ + P   +        ++D  KCIY
Sbjct: 131 PSREDLVIGEISVDEDKCVYCSICSEMCPAGAISLTNNPEFSNDNLNNTI-EVDTSKCIY 189

Query: 106 CGLCQEACPVDAI 118
           CG+C+ ACP DAI
Sbjct: 190 CGVCKRACPQDAI 202



 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++ CI C  C ++CP   I                   +D  KC+YC +C E CP  AI
Sbjct: 105 NDDDCIYCGRCYSVCPRDTILF-KRELPSREDLVIGEISVDEDKCVYCSICSEMCPAGAI 163

Query: 119 VEGPNFEFATET 130
               N EF+ + 
Sbjct: 164 SLTNNPEFSNDN 175



 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 4/85 (4%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDM 100
           P F  ++          +CI C +C+  CP  AI             +    +    I  
Sbjct: 169 PEFSNDNLNNTIEVDTSKCIYCGVCKRACPQDAIKAVCSTCMLQDQIKAPEINGTASILK 228

Query: 101 IKCIYCGLCQEACPVDAIVEGPNFE 125
             C+ C  C+E CPVD I     FE
Sbjct: 229 DGCVNCSWCKEVCPVDTINVTKPFE 253



 Score = 42.4 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 32/76 (42%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R     R+  +  +RC+ C +C  +CP  ++ +        G        +    C+ CG
Sbjct: 10  RSGEETRKLSHNNDRCVGCGICTDVCPTSSLRLGPIVPIARGLIEMDLVSVTSNTCVLCG 69

Query: 108 LCQEACPVDAIVEGPN 123
           LC  ACP DA+    N
Sbjct: 70  LCSVACPFDALSLTIN 85



 Score = 38.9 bits (89), Expect = 0.25,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 11/79 (13%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +  + +  F G   L        +  AC  C+ +CP  A+ I               
Sbjct: 241 CPVDTINVTKPFEGTLKLVETDESTCKGDACHACQDVCPCDAVEIIDNKA---------- 290

Query: 96  YDIDMIKCIYCGLCQEACP 114
             I++  C  CG C  ACP
Sbjct: 291 -TINLDYCNLCGACVNACP 308



 Score = 33.5 bits (75), Expect = 8.7,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+ C  C+ +CP   I +    +  +GT + V  D    K   C  CQ+ CP DA+    
Sbjct: 231 CVNCSWCKEVCPVDTINVT---KPFEGTLKLVETDESTCKGDACHACQDVCPCDAVEIID 287

Query: 123 N 123
           N
Sbjct: 288 N 288


>gi|239826017|ref|YP_002948641.1| formate dehydrogenase, subunit alpha [Geobacillus sp. WCH70]
 gi|239806310|gb|ACS23375.1| formate dehydrogenase, alpha subunit [Geobacillus sp. WCH70]
          Length = 987

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 3/83 (3%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD--- 97
                    + +   Y     +CIAC  C  +C    +             R +  +   
Sbjct: 129 RPKVDPSEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPRVIWDNGVP 188

Query: 98  IDMIKCIYCGLCQEACPVDAIVE 120
           I+   C+ CG C   CP +A++E
Sbjct: 189 INESSCVSCGQCVTVCPCNALME 211



 Score = 38.9 bits (89), Expect = 0.21,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q+          +       Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKLHNTVELMGIEHQSYPYRPKVDPSEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|125972950|ref|YP_001036860.1| NADH dehydrogenase (quinone) [Clostridium thermocellum ATCC 27405]
 gi|256005706|ref|ZP_05430662.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 2360]
 gi|281417161|ref|ZP_06248181.1| NADH dehydrogenase (quinone) [Clostridium thermocellum JW20]
 gi|125713175|gb|ABN51667.1| NADH dehydrogenase (quinone) [Clostridium thermocellum ATCC 27405]
 gi|255990337|gb|EEU00463.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 2360]
 gi|281408563|gb|EFB38821.1| NADH dehydrogenase (quinone) [Clostridium thermocellum JW20]
 gi|316940814|gb|ADU74848.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 1313]
          Length = 624

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 15/99 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            ++  F+ +   +   ++  T         L+        C  C  C   CP  AIT   
Sbjct: 541 TIKN-FREEYEAHIYDKRCPTGNC----QKLKTITIDASLCKGCSKCARSCPVGAITG-- 593

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
                   +    + ID  KCI CG C E C   AI+EG
Sbjct: 594 --------KVKEPFVIDQSKCIKCGACIETCAFHAILEG 624


>gi|325960221|ref|YP_004291687.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
 gi|325331653|gb|ADZ10715.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
          Length = 334

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 37/100 (37%), Gaps = 8/100 (8%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI----ESGPRCHDGTRRTVRY 96
           G   P  RG   +      +  C  C LC A CP  A+      E   +  +  +     
Sbjct: 39  GPVLPIARGLVDMDYININKNSCCLCGLCAAACPFDALEFKIDGEDIKKMDEYPKWIKDA 98

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
            ID   CIYC  C+ ACP DAI            R++L  
Sbjct: 99  AIDSEACIYCKACETACPQDAIRVQR----TLPKREDLVI 134



 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 6/71 (8%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R +  +      +++CI+CK+CE +CP  AIT++   R    T       +D  KC+YC 
Sbjct: 129 REDLVIGEIGVDQDKCISCKICEELCPGDAITVQKTGRNEYET------VVDEDKCVYCL 182

Query: 108 LCQEACPVDAI 118
           +C+ ACP DAI
Sbjct: 183 VCKRACPTDAI 193



 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 34/78 (43%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
            S   R    +R   +  E+C+ C +C +ICP ++I          G       +I+   
Sbjct: 1   MSSLERNGDEIRSLKHSNEKCVGCGICSSICPTKSINNGPVLPIARGLVDMDYININKNS 60

Query: 103 CIYCGLCQEACPVDAIVE 120
           C  CGLC  ACP DA+  
Sbjct: 61  CCLCGLCAAACPFDALEF 78



 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 7/74 (9%)

Query: 59  GEERCIACKLCEAICPAQA-------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            E++C+ C +C+  CP  A          +      +  +      ++   C+ CG CQE
Sbjct: 174 DEDKCVYCLVCKRACPTDAIKAVCSSCAYQDYKFDPETFKTHGNTILNPDSCVNCGWCQE 233

Query: 112 ACPVDAIVEGPNFE 125
            CPVDA V    FE
Sbjct: 234 ICPVDAAVVTKPFE 247



 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 1/69 (1%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
              ++      E CI CK CE  CP  AI ++                +D  KCI C +C
Sbjct: 92  PKWIKDAAIDSEACIYCKACETACPQDAIRVQ-RTLPKREDLVIGEIGVDQDKCISCKIC 150

Query: 110 QEACPVDAI 118
           +E CP DAI
Sbjct: 151 EELCPGDAI 159



 Score = 34.7 bits (78), Expect = 4.4,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 23/86 (26%), Gaps = 24/86 (27%)

Query: 59  GEERCIACKLCEAICPAQA------------ITIESGPRCHDGTRRTVRY---------- 96
             + C+ C  C+ ICP  A               E+  +                     
Sbjct: 221 NPDSCVNCGWCQEICPVDAAVVTKPFEGEASFDDEAECKGDSCHACQDVCPCNAIEIVDG 280

Query: 97  --DIDMIKCIYCGLCQEACPVDAIVE 120
              ID   C+ CG C   CP   I  
Sbjct: 281 KSVIDQRVCVLCGACANVCPQKCIQI 306


>gi|320325636|gb|EFW81698.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           glycinea str. B076]
 gi|320327081|gb|EFW83095.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           glycinea str. race 4]
 gi|330876899|gb|EGH11048.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 290

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 10/75 (13%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           RG    +     E  CI C  C   CP  AI   +           + + + + +C  C 
Sbjct: 76  RGAAPAQVAFIREAECIGCTKCIQACPVDAIVGAAK----------LMHTVIVDECTGCD 125

Query: 108 LCQEACPVDAIVEGP 122
           LC   CPVD I   P
Sbjct: 126 LCVAPCPVDCIEMHP 140


>gi|313898096|ref|ZP_07831635.1| rubredoxin [Clostridium sp. HGF2]
 gi|312957124|gb|EFR38753.1| rubredoxin [Clostridium sp. HGF2]
          Length = 571

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 9/62 (14%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C  C  +C           +   G    +    D   CI+CG C   CP  AI E  
Sbjct: 27  CIKCGQCRDVCQ---------KQISVGHHYDLLKTGDTAICIHCGQCANVCPTGAITEIQ 77

Query: 123 NF 124
           ++
Sbjct: 78  DW 79


>gi|312127756|ref|YP_003992630.1| nitrite and sulfite reductase 4Fe-4S region [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777775|gb|ADQ07261.1| nitrite and sulphite reductase 4Fe-4S region [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 296

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 9/76 (11%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G          E  C  C LC+A+CPA+AI I+          +  +  ID  KC YCG 
Sbjct: 152 GIKGAIEPEWEESSCTFCGLCQAVCPAKAIQIDE---------KNKKITIDRDKCTYCGR 202

Query: 109 CQEACPVDAIVEGPNF 124
           C ++CP ++    P +
Sbjct: 203 CVKSCPTNSWKGKPGY 218


>gi|289626586|ref|ZP_06459540.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|289647568|ref|ZP_06478911.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           aesculi str. 2250]
 gi|330867251|gb|EGH01960.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           aesculi str. 0893_23]
          Length = 290

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 10/75 (13%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           RG    +     E  CI C  C   CP  AI   +           + + + + +C  C 
Sbjct: 76  RGAAPAQVAFIREAECIGCTKCIQACPVDAIVGAAK----------LMHTVIVDECTGCD 125

Query: 108 LCQEACPVDAIVEGP 122
           LC   CPVD I   P
Sbjct: 126 LCVAPCPVDCIEMHP 140


>gi|218674605|ref|ZP_03524274.1| NADH-ubiquinone oxidoreductase protein, chain G [Rhizobium etli
           GR56]
          Length = 527

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 3/80 (3%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           +   S   R    +    N   RCI C+ C  +C      +  G            ++  
Sbjct: 128 RVFHSEDIRLSPVIIMNVN---RCIQCQRCVRMCEEVVGAVALGTAEKGMDTAVTGFEGS 184

Query: 100 MIKCIYCGLCQEACPVDAIV 119
           +  C  CG C E CPV A++
Sbjct: 185 LASCDQCGNCVEVCPVGALM 204


>gi|20093761|ref|NP_613608.1| formylmethanofuran dehydrogenase subunit F, ferredoxin containing
           [Methanopyrus kandleri AV19]
 gi|19886668|gb|AAM01538.1| Probable formylmethanofuran dehydrogenase subunit F, ferredoxin
           containing [Methanopyrus kandleri AV19]
          Length = 150

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 9/81 (11%)

Query: 44  SPRFRGEHALRRYPN-GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
               RG   L +     E+RC+ C +C   CP  AI +                +ID  +
Sbjct: 56  PVTERGVPKLPKNVEVDEDRCVYCGVCMRTCPVDAIQVTK--------PYQGHIEIDDEE 107

Query: 103 CIYCGLCQEACPVDAIVEGPN 123
           C+ CGLC E CP +A+  G +
Sbjct: 108 CVGCGLCVEICPCNALEFGRD 128



 Score = 37.0 bits (84), Expect = 0.88,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
            +     ++D  +C+YCG+C   CPVDAI     +
Sbjct: 63  PKLPKNVEVDEDRCVYCGVCMRTCPVDAIQVTKPY 97


>gi|14590634|ref|NP_142702.1| indolepyruvate ferredoxin oxidoreductase alpha subunit [Pyrococcus
           horikoshii OT3]
 gi|6685560|sp|O58495|IORA_PYRHO RecName: Full=Indolepyruvate oxidoreductase subunit iorA;
           Short=IOR; AltName: Full=Indolepyruvate ferredoxin
           oxidoreductase subunit alpha
 gi|3257173|dbj|BAA29856.1| 648aa long hypothetical indolepyruvate ferredoxin oxidoreductase
           alpha subunit [Pyrococcus horikoshii OT3]
          Length = 648

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 9/79 (11%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R       Y   EE+C  CK+C       AI  ++  +            +D + C  CG
Sbjct: 579 REGKQWPIYQVNEEKCTGCKICINAYGCPAIYWDAEKKKA---------RVDPLMCWGCG 629

Query: 108 LCQEACPVDAIVEGPNFEF 126
            C + CP  A  +    E 
Sbjct: 630 GCAQVCPFGAFEKVREGEL 648


>gi|329956925|ref|ZP_08297493.1| pyruvate synthase [Bacteroides clarus YIT 12056]
 gi|328523682|gb|EGF50774.1| pyruvate synthase [Bacteroides clarus YIT 12056]
          Length = 1185

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 32/90 (35%), Gaps = 15/90 (16%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGP 84
           E+G+     RG  A     N  E CI C  C  +CP                A   +   
Sbjct: 667 EQGTAKYEKRGVAAFVPEWN-PENCIQCNKCAYVCPHASIRPFVLDAEEQKGAEFAQLKA 725

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                   T R  +D++ C+ CG C + CP
Sbjct: 726 VGKVFDGMTFRIQVDVLDCLGCGNCADVCP 755


>gi|283853443|ref|ZP_06370687.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Desulfovibrio sp. FW1012B]
 gi|283571163|gb|EFC19179.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Desulfovibrio sp. FW1012B]
          Length = 776

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 31/103 (30%), Gaps = 8/103 (7%)

Query: 25  RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84
           R     K T    F+            A +    G   C  C LCE ICP  AI+   G 
Sbjct: 682 RKMIDYKRTKLEYFDPRIMEFNDLTSCASQCSSCG--ACRDCGLCETICPTGAISRRQGE 739

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
                            KCI CG C  ACP        N   A
Sbjct: 740 GKEFEMVSD------PEKCIGCGFCGNACPCGVWTIVENTPLA 776


>gi|148380778|ref|YP_001255319.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum
           A str. ATCC 3502]
 gi|153931280|ref|YP_001385063.1| dihydropyrimidine dehydrogenase [Clostridium botulinum A str. ATCC
           19397]
 gi|153934691|ref|YP_001388532.1| dihydropyrimidine dehydrogenase [Clostridium botulinum A str. Hall]
 gi|148290262|emb|CAL84382.1| putative iron-sulfur oxidoreductase [Clostridium botulinum A str.
           ATCC 3502]
 gi|152927324|gb|ABS32824.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum
           A str. ATCC 19397]
 gi|152930605|gb|ABS36104.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum
           A str. Hall]
          Length = 411

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 7/110 (6%)

Query: 15  EFVGAFFLCLRY-FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
           + +      ++   F+    +     K            +      EE C+ C  C   C
Sbjct: 295 DMIEGLSYYMKEKGFEKLEDMVGLANKNIIPAEDLDRGYIVYPKFNEENCVGCGRCYISC 354

Query: 74  PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                    G +      +  +  ++   C+ C LC   CPV  I +G  
Sbjct: 355 YDG------GHQAIKWDGKNRKPILEKENCVGCHLCANVCPVQCISKGEI 398


>gi|119489276|ref|ZP_01622083.1| ferredoxin (flavodoxin) oxidoreductase [Lyngbya sp. PCC 8106]
 gi|119454750|gb|EAW35895.1| ferredoxin (flavodoxin) oxidoreductase [Lyngbya sp. PCC 8106]
          Length = 1190

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 36/118 (30%), Gaps = 30/118 (25%)

Query: 58  NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRYDID--MI 101
              + C+ C  C  +CP               +A          D      ++ I     
Sbjct: 685 WDPDVCVQCGKCIMVCPHAVIRGKVYEEKELEKAPESFKFTNIKDKEYSGQKFTIQVAPE 744

Query: 102 KCIYCGLCQEACPV--------DAIVEGPNFEFATETRQ--ELYYDKERLLNNGDRWE 149
            C  CG+C + CP          AI   P      + R+  + + +    L N DR +
Sbjct: 745 DCTGCGICVDICPAKNKSMASRKAINMEPQQPLREQERENWDFFLN----LPNPDRRQ 798


>gi|56478214|ref|YP_159803.1| electron transport complex protein RnfC [Aromatoleum aromaticum
           EbN1]
 gi|56314257|emb|CAI08902.1| putative electron transport complex protein [Aromatoleum aromaticum
           EbN1]
          Length = 547

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 31/101 (30%), Gaps = 11/101 (10%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C  C   CPA     E               +  +  CI CG C   CP   I    
Sbjct: 367 CIRCGACARACPADLQPFELY-WFSRAKNVGKAQEYHLFDCIECGSCAFVCPSH-IPLVD 424

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            F F+        + +ER L   D+      R       YR
Sbjct: 425 YFRFSKSE----IWARERELKASDQ-----ARERFEFRNYR 456


>gi|327535552|gb|AEA94386.1| pyruvate:ferredoxin oxidoreductase [Enterococcus faecalis OG1RF]
          Length = 1243

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96
            AL       +RC  C  C  +CP  AI                              R 
Sbjct: 695 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 754

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125
            + +  C  CGLC EACP    A+V  P  E
Sbjct: 755 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 785


>gi|315173790|gb|EFU17807.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX1346]
          Length = 1243

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96
            AL       +RC  C  C  +CP  AI                              R 
Sbjct: 695 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 754

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125
            + +  C  CGLC EACP    A+V  P  E
Sbjct: 755 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 785


>gi|315167531|gb|EFU11548.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX1341]
          Length = 1243

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96
            AL       +RC  C  C  +CP  AI                              R 
Sbjct: 695 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 754

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125
            + +  C  CGLC EACP    A+V  P  E
Sbjct: 755 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 785


>gi|315157160|gb|EFU01177.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX0043]
          Length = 1243

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96
            AL       +RC  C  C  +CP  AI                              R 
Sbjct: 695 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 754

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125
            + +  C  CGLC EACP    A+V  P  E
Sbjct: 755 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 785


>gi|315149286|gb|EFT93302.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX0012]
          Length = 1243

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96
            AL       +RC  C  C  +CP  AI                              R 
Sbjct: 695 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 754

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125
            + +  C  CGLC EACP    A+V  P  E
Sbjct: 755 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 785


>gi|315146221|gb|EFT90237.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX4244]
          Length = 1243

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96
            AL       +RC  C  C  +CP  AI                              R 
Sbjct: 695 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 754

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125
            + +  C  CGLC EACP    A+V  P  E
Sbjct: 755 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 785


>gi|315143366|gb|EFT87382.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX2141]
          Length = 1243

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96
            AL       +RC  C  C  +CP  AI                              R 
Sbjct: 695 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 754

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125
            + +  C  CGLC EACP    A+V  P  E
Sbjct: 755 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 785


>gi|315031082|gb|EFT43014.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX0017]
          Length = 1243

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96
            AL       +RC  C  C  +CP  AI                              R 
Sbjct: 695 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 754

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125
            + +  C  CGLC EACP    A+V  P  E
Sbjct: 755 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 785


>gi|312900817|ref|ZP_07760111.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX0470]
 gi|311291916|gb|EFQ70472.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX0470]
 gi|315171593|gb|EFU15610.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX1342]
          Length = 1243

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96
            AL       +RC  C  C  +CP  AI                              R 
Sbjct: 695 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 754

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125
            + +  C  CGLC EACP    A+V  P  E
Sbjct: 755 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 785


>gi|307277760|ref|ZP_07558846.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX0860]
 gi|306505639|gb|EFM74823.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX0860]
          Length = 1243

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96
            AL       +RC  C  C  +CP  AI                              R 
Sbjct: 695 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 754

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125
            + +  C  CGLC EACP    A+V  P  E
Sbjct: 755 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 785


>gi|300856100|ref|YP_003781084.1| pyruvate:ferredoxin oxidoreductase [Clostridium ljungdahlii DSM
           13528]
 gi|300436215|gb|ADK15982.1| pyruvate:ferredoxin oxidoreductase [Clostridium ljungdahlii DSM
           13528]
          Length = 1174

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 36/119 (30%), Gaps = 24/119 (20%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG           ++CI C  C  +CP                A       +        
Sbjct: 675 RGIAVFIPEWQ-IDKCIQCNQCSYVCPHSVIRACLLDDREKENAPENFLTKKPVGKDLEN 733

Query: 94  VRY--DIDMIKCIYCGLCQEACPVD--AIVEGPNFEFATETRQELYY-----DKERLLN 143
           + Y   I  + C  CG C + CP    A++  P  E   E      Y      KE L++
Sbjct: 734 LHYRIQISPLDCTGCGNCADICPAPGKALIMKPAKEEIEEQSDNFEYAMKITPKEGLMD 792


>gi|293382120|ref|ZP_06628064.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis R712]
 gi|293386625|ref|ZP_06631202.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis S613]
 gi|312908248|ref|ZP_07767212.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis DAPTO 512]
 gi|312910681|ref|ZP_07769522.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis DAPTO 516]
 gi|291080499|gb|EFE17863.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis R712]
 gi|291083918|gb|EFE20881.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis S613]
 gi|310625662|gb|EFQ08945.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis DAPTO 512]
 gi|311289057|gb|EFQ67613.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis DAPTO 516]
          Length = 1243

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96
            AL       +RC  C  C  +CP  AI                              R 
Sbjct: 695 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 754

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125
            + +  C  CGLC EACP    A+V  P  E
Sbjct: 755 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 785


>gi|283956852|ref|ZP_06374325.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Campylobacter jejuni
           subsp. jejuni 1336]
 gi|283791578|gb|EFC30374.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Campylobacter jejuni
           subsp. jejuni 1336]
          Length = 1186

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 43/133 (32%), Gaps = 30/133 (22%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA------------------QAIT 79
           FE G+T    RG   +         CI C  C ++CP                       
Sbjct: 668 FEHGTTEYEKRGVGVMVPRWIE-ANCIQCNQCASVCPHAVIRPFLINDEEMANAPRGVKD 726

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV--DAIVEGP--------NFEFATE 129
                +   G + + +  +  + C  C LC   CP    ++V  P          E A  
Sbjct: 727 HALEAKGTKGEKLSFKIQVSPLDCTGCELCVHECPTKEKSLVMVPLQEEMDFGEQENADY 786

Query: 130 TRQELYYDKERLL 142
             +E+ Y K+ +L
Sbjct: 787 LFKEITY-KDDIL 798


>gi|257422125|ref|ZP_05599115.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Enterococcus
           faecalis X98]
 gi|257163949|gb|EEU93909.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Enterococcus
           faecalis X98]
          Length = 1223

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96
            AL       +RC  C  C  +CP  AI                              R 
Sbjct: 675 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 734

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125
            + +  C  CGLC EACP    A+V  P  E
Sbjct: 735 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 765


>gi|257419716|ref|ZP_05596710.1| pyruvate decarboxylase [Enterococcus faecalis T11]
 gi|257161544|gb|EEU91504.1| pyruvate decarboxylase [Enterococcus faecalis T11]
          Length = 1223

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96
            AL       +RC  C  C  +CP  AI                              R 
Sbjct: 675 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 734

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125
            + +  C  CGLC EACP    A+V  P  E
Sbjct: 735 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 765


>gi|257084762|ref|ZP_05579123.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Enterococcus
           faecalis Fly1]
 gi|256992792|gb|EEU80094.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Enterococcus
           faecalis Fly1]
          Length = 1223

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96
            AL       +RC  C  C  +CP  AI                              R 
Sbjct: 675 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 734

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125
            + +  C  CGLC EACP    A+V  P  E
Sbjct: 735 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 765


>gi|256961471|ref|ZP_05565642.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis
           Merz96]
 gi|256951967|gb|EEU68599.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis
           Merz96]
          Length = 1223

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96
            AL       +RC  C  C  +CP  AI                              R 
Sbjct: 675 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 734

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125
            + +  C  CGLC EACP    A+V  P  E
Sbjct: 735 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 765


>gi|256762965|ref|ZP_05503545.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis T3]
 gi|256684216|gb|EEU23911.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis T3]
          Length = 1223

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96
            AL       +RC  C  C  +CP  AI                              R 
Sbjct: 675 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 734

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125
            + +  C  CGLC EACP    A+V  P  E
Sbjct: 735 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 765


>gi|255975374|ref|ZP_05425960.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis T2]
 gi|255968246|gb|EET98868.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis T2]
          Length = 1223

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96
            AL       +RC  C  C  +CP  AI                              R 
Sbjct: 675 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 734

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125
            + +  C  CGLC EACP    A+V  P  E
Sbjct: 735 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 765


>gi|255972263|ref|ZP_05422849.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis T1]
 gi|256956546|ref|ZP_05560717.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Enterococcus
           faecalis DS5]
 gi|255963281|gb|EET95757.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis T1]
 gi|256947042|gb|EEU63674.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Enterococcus
           faecalis DS5]
          Length = 1223

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96
            AL       +RC  C  C  +CP  AI                              R 
Sbjct: 675 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 734

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125
            + +  C  CGLC EACP    A+V  P  E
Sbjct: 735 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 765


>gi|253729977|ref|ZP_04864142.1| formate dehydrogenase family protein [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|297209875|ref|ZP_06926271.1| formate dehydrogenase alpha subunit [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|300910887|ref|ZP_07128337.1| formate dehydrogenase alpha subunit [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|253726424|gb|EES95153.1| formate dehydrogenase family protein [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|296885548|gb|EFH24485.1| formate dehydrogenase alpha subunit [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|300887867|gb|EFK83062.1| formate dehydrogenase alpha subunit [Staphylococcus aureus subsp.
           aureus TCH70]
          Length = 1012

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 13/96 (13%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P+EK               Y     +CI C  C   C    +             R +  
Sbjct: 159 PYEKDYGP----------FYRYDPNQCILCGRCVEACQDIEVNETIRIDWDREHPRVIWD 208

Query: 97  D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           +   I+   C+ CG C   CP +A++E      A  
Sbjct: 209 NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGY 244



 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 17/68 (25%), Gaps = 8/68 (11%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105
           R        C  C      CE      A                      Y  D  +CI 
Sbjct: 118 RILEKHMLYCTVCDYNNGDCEIHNTMDAWGLQHQTYEYKEKPYEKDYGPFYRYDPNQCIL 177

Query: 106 CGLCQEAC 113
           CG C EAC
Sbjct: 178 CGRCVEAC 185


>gi|300860488|ref|ZP_07106575.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TUSoD Ef11]
 gi|300849527|gb|EFK77277.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TUSoD Ef11]
          Length = 1229

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96
            AL       +RC  C  C  +CP  AI                              R 
Sbjct: 681 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 740

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125
            + +  C  CGLC EACP    A+V  P  E
Sbjct: 741 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 771


>gi|229545321|ref|ZP_04434046.1| pyruvate synthase [Enterococcus faecalis TX1322]
 gi|229309528|gb|EEN75515.1| pyruvate synthase [Enterococcus faecalis TX1322]
          Length = 1243

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96
            AL       +RC  C  C  +CP  AI                              R 
Sbjct: 695 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 754

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125
            + +  C  CGLC EACP    A+V  P  E
Sbjct: 755 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 785


>gi|229549565|ref|ZP_04438290.1| pyruvate synthase [Enterococcus faecalis ATCC 29200]
 gi|312951167|ref|ZP_07770070.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX0102]
 gi|229305230|gb|EEN71226.1| pyruvate synthase [Enterococcus faecalis ATCC 29200]
 gi|310630832|gb|EFQ14115.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX0102]
 gi|315034724|gb|EFT46656.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX0027]
 gi|315152653|gb|EFT96669.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX0031]
 gi|315159499|gb|EFU03516.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX0312]
          Length = 1243

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96
            AL       +RC  C  C  +CP  AI                              R 
Sbjct: 695 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 754

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125
            + +  C  CGLC EACP    A+V  P  E
Sbjct: 755 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 785


>gi|227520214|ref|ZP_03950263.1| pyruvate synthase [Enterococcus faecalis TX0104]
 gi|227555351|ref|ZP_03985398.1| pyruvate synthase [Enterococcus faecalis HH22]
 gi|227072293|gb|EEI10256.1| pyruvate synthase [Enterococcus faecalis TX0104]
 gi|227175562|gb|EEI56534.1| pyruvate synthase [Enterococcus faecalis HH22]
 gi|315575148|gb|EFU87339.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX0309B]
 gi|315582575|gb|EFU94766.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX0309A]
          Length = 1243

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96
            AL       +RC  C  C  +CP  AI                              R 
Sbjct: 695 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 754

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125
            + +  C  CGLC EACP    A+V  P  E
Sbjct: 755 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 785


>gi|110641751|ref|YP_669481.1| electron transport complex protein RnfB [Escherichia coli 536]
 gi|123148053|sp|Q0THJ9|RNFB_ECOL5 RecName: Full=Electron transport complex protein rnfB
 gi|110343343|gb|ABG69580.1| electron transport complex protein RnfB [Escherichia coli 536]
          Length = 192

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   +             + +    C  C LC + CP   I
Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTHCI 162

Query: 119 VEGPNFEFATETRQEL 134
              P  E     + +L
Sbjct: 163 SLQPVAETPDSWKWDL 178



 Score = 35.5 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C  C +ACPVDAI
Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132


>gi|29376666|ref|NP_815820.1| pyruvate ferredoxin/flavodoxin oxidoreductase family protein
           [Enterococcus faecalis V583]
 gi|29344130|gb|AAO81890.1| pyruvate ferredoxin/flavodoxin oxidoreductase family protein
           [Enterococcus faecalis V583]
          Length = 1229

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96
            AL       +RC  C  C  +CP  AI                              R 
Sbjct: 681 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 740

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125
            + +  C  CGLC EACP    A+V  P  E
Sbjct: 741 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 771


>gi|116750952|ref|YP_847639.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Syntrophobacter fumaroxidans MPOB]
 gi|116700016|gb|ABK19204.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Syntrophobacter fumaroxidans MPOB]
          Length = 950

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 12/87 (13%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR-------CHDGTRRTVRYDI 98
            FR            + CI+C  C  +CP +     +                  ++Y I
Sbjct: 20  HFRVTLRRHPRYVDMDHCISCGECAKVCPVEVKDEFNEKMSIRKAIYVKYPQAVPLKYQI 79

Query: 99  DMIKCIY-----CGLCQEACPVDAIVE 120
           D   CI      CG C++ CP  A+  
Sbjct: 80  DGRNCIRVRGGDCGGCEKVCPSGAVRF 106



 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 4/60 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  C  C LC  +CP  A+ +E  P    G+       +   +C  CG CQ  CP + I
Sbjct: 866 NETTCDGCALCLDVCPYGALQLEEIP----GSNGRQHAVVKAARCKGCGACQATCPKEGI 921


>gi|299146441|ref|ZP_07039509.1| putative [Fe] hydrogenase, large subunit HymC [Bacteroides sp.
           3_1_23]
 gi|298516932|gb|EFI40813.1| putative [Fe] hydrogenase, large subunit HymC [Bacteroides sp.
           3_1_23]
          Length = 588

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 5/89 (5%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVR 95
           PF  G  SPR R   A        ++CI C+ CE++C   Q +      R    T     
Sbjct: 131 PFNGGELSPRKREITA--SIVRNMDKCIFCRRCESVCNDVQTVGALGAIRRGFNTTIAPA 188

Query: 96  YDIDM--IKCIYCGLCQEACPVDAIVEGP 122
           +D  M   +C YCG C   CPV A+ E  
Sbjct: 189 FDRMMTESECTYCGQCVAVCPVGALTERD 217



 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 5/67 (7%)

Query: 52  ALRRYPNGEERCIACKLCEAICPA-----QAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
            L  +PN    C  C  CE    A     + +    G         T     +M KCI+C
Sbjct: 99  ILSDHPNDCLTCPKCGNCELQTLALRFNIREMPFNGGELSPRKREITASIVRNMDKCIFC 158

Query: 107 GLCQEAC 113
             C+  C
Sbjct: 159 RRCESVC 165


>gi|298674390|ref|YP_003726140.1| CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon
           [Methanohalobium evestigatum Z-7303]
 gi|298287378|gb|ADI73344.1| CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit
           [Methanohalobium evestigatum Z-7303]
          Length = 801

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           ERC+ CK CE +CP      ++      G      ++    KCI CG C++ CP 
Sbjct: 410 ERCVHCKECELVCPTNLSISDAMSAAETGD--FAPFEELHDKCIGCGRCEQVCPK 462


>gi|297531251|ref|YP_003672526.1| formate dehydrogenase, subunit alpha [Geobacillus sp. C56-T3]
 gi|297254503|gb|ADI27949.1| formate dehydrogenase, alpha subunit [Geobacillus sp. C56-T3]
          Length = 987

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 27/83 (32%), Gaps = 3/83 (3%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---YD 97
                    + +   Y     +CIAC  C   C    +             R V      
Sbjct: 129 RPKVDPSEVDMSHPFYRYDPNQCIACGQCVEACQNLQVNETLSIDWEAERPRVVWDGGVP 188

Query: 98  IDMIKCIYCGLCQEACPVDAIVE 120
           I+   C+ CG C   CP +A++E
Sbjct: 189 INESSCVSCGHCVTVCPCNALME 211



 Score = 38.5 bits (88), Expect = 0.29,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q           +       Y  D  +
Sbjct: 91  RLLENHLLYCTVCDNNNGNCKLHNTAEMMQIEHQTYPYRPKVDPSEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C EAC
Sbjct: 151 CIACGQCVEAC 161


>gi|268607922|ref|ZP_06141653.1| NADH dehydrogenase (quinone) [Ruminococcus flavefaciens FD-1]
          Length = 632

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 3/66 (4%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L  +   +++CI C +C   CPA AIT           ++    +ID  KC+ CG C   
Sbjct: 567 LLSFEIEKDKCIGCGMCAKQCPASAITRTDYIAPG---KKLAAMEIDKNKCVKCGACIAT 623

Query: 113 CPVDAI 118
           C   AI
Sbjct: 624 CKFKAI 629



 Score = 42.0 bits (97), Expect = 0.028,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 19/44 (43%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            +          +  + ++I+  KCI CG+C + CP  AI    
Sbjct: 553 HVVDKKCPAGVCKDLLSFEIEKDKCIGCGMCAKQCPASAITRTD 596


>gi|187251887|ref|YP_001876369.1| electron transfer flavoprotein subunit alpha [Elusimicrobium
           minutum Pei191]
 gi|186972047|gb|ACC99032.1| Electron transfer flavoprotein alpha subunit [Elusimicrobium
           minutum Pei191]
          Length = 397

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 22/63 (34%), Gaps = 12/63 (19%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           N    CI C  C  ICP  A++++      +              C  CG C   CPV  
Sbjct: 3   NIGSNCIGCTKCVRICPFGALSMDGKKAVVN------------SACTLCGACIPECPVKC 50

Query: 118 IVE 120
           I  
Sbjct: 51  ISM 53


>gi|153876731|ref|ZP_02003902.1| conserved hypothetical protein [Beggiatoa sp. PS]
 gi|152066805|gb|EDN66098.1| conserved hypothetical protein [Beggiatoa sp. PS]
          Length = 267

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 21/63 (33%), Gaps = 5/63 (7%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C+AC  C  +CP  A+                 Y  D   C  CGLC   CP   I   
Sbjct: 210 NCLACDNCWMLCPDSAVLKTKESASDG-----SHYIFDYDYCKGCGLCANECPCGFIQML 264

Query: 122 PNF 124
             F
Sbjct: 265 DEF 267


>gi|154496519|ref|ZP_02035215.1| hypothetical protein BACCAP_00811 [Bacteroides capillosus ATCC
           29799]
 gi|150274152|gb|EDN01243.1| hypothetical protein BACCAP_00811 [Bacteroides capillosus ATCC
           29799]
          Length = 449

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 9/63 (14%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E+CI C +C+  C        +      G +           CIYCG C  ACPVD+I E
Sbjct: 15  EKCIRCGMCKVACTNLMGVHGTYTLEETGGK---------AVCIYCGQCANACPVDSITE 65

Query: 121 GPN 123
              
Sbjct: 66  RDE 68


>gi|145528101|ref|XP_001449850.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124417439|emb|CAK82453.1| unnamed protein product [Paramecium tetraurelia]
          Length = 586

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 1/75 (1%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
             E  LR     ++RC   + C   C       +S   C + T+++    I+   CI C 
Sbjct: 1   MEESKLRIAIINKDRCKP-QRCALECKKNCPINKSEKLCIEVTKQSKTCTINESLCIGCA 59

Query: 108 LCQEACPVDAIVEGP 122
           +C + CP  AI+   
Sbjct: 60  ICVKKCPFKAIMIIN 74


>gi|158319289|ref|YP_001511796.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing
           protein [Alkaliphilus oremlandii OhILAs]
 gi|158139488|gb|ABW17800.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Alkaliphilus oremlandii OhILAs]
          Length = 1172

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 32/107 (29%), Gaps = 19/107 (17%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRRTV-------- 94
           RG           ++CI C  C  +CP  AI       E      +G             
Sbjct: 677 RGIAVNVPEWY-SDKCIQCNQCSFVCPHAAIRPFLLDEEEVKNAPEGFNTVKATGKEFDG 735

Query: 95  ---RYDIDMIKCIYCGLCQEACP--VDAIVEGPNFEFATETRQELYY 136
              +  +  + C  CG C + CP    AI   P        R+   Y
Sbjct: 736 LQYKIQVSPLDCTGCGNCVDICPAKEKAIAMMPLEPQVAAQRENWEY 782


>gi|14521496|ref|NP_126972.1| indolepyruvate ferredoxin oxidoreductase, subunit alpha [Pyrococcus
           abyssi GE5]
 gi|14194881|sp|Q9UZ57|IORA_PYRAB RecName: Full=Indolepyruvate oxidoreductase subunit iorA;
           Short=IOR; AltName: Full=Indolepyruvate ferredoxin
           oxidoreductase subunit alpha
 gi|5458715|emb|CAB50202.1| iorA indolepyruvate ferredoxin oxidoreductase, subunit alpha
           [Pyrococcus abyssi GE5]
          Length = 648

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 9/79 (11%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R       Y   E++C  CK+C       AI  +   +            +D + C  CG
Sbjct: 579 RAGKQWPIYQVNEDKCTGCKICINAYGCPAIYWDPEKKKA---------KVDPLMCWGCG 629

Query: 108 LCQEACPVDAIVEGPNFEF 126
            C + CP DA  +    E 
Sbjct: 630 GCAQVCPFDAFEKVREGEL 648


>gi|87118384|ref|ZP_01074283.1| electron transport complex protein RnfB [Marinomonas sp. MED121]
 gi|86166018|gb|EAQ67284.1| electron transport complex protein RnfB [Marinomonas sp. MED121]
          Length = 198

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 31/93 (33%), Gaps = 13/93 (13%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E          E   +     E+ CI C  C   CP  AI   +             + +
Sbjct: 90  EAIPLDGDAAEEPKKQVAVIREDECIGCTKCIQACPVDAILGAAKQ----------MHTV 139

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
              +C  C LC E CPVD I      E A  +R
Sbjct: 140 ISDECTGCDLCVEPCPVDCIDMV---EVAVTSR 169


>gi|332799826|ref|YP_004461325.1| NADH dehydrogenase (quinone) [Tepidanaerobacter sp. Re1]
 gi|332697561|gb|AEE92018.1| NADH dehydrogenase (quinone) [Tepidanaerobacter sp. Re1]
          Length = 597

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 15/96 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            +RY F+ +   +   +K           AL  Y    ++C  C +C  +CP QAI+ E 
Sbjct: 514 TIRY-FRDEYEAHIKDKKCPAGAC----KALVHYEIIADKCKGCGMCLKVCPTQAISGE- 567

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                    R   + ID  KCI C  C + CP  AI
Sbjct: 568 ---------RRQPHKIDTDKCIKCNSCFDRCPFGAI 594



 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 8/62 (12%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
            I+         +  V Y+I   KC  CG+C + CP  AI        + E RQ    D 
Sbjct: 525 HIKDKKCPAGACKALVHYEIIADKCKGCGMCLKVCPTQAI--------SGERRQPHKIDT 576

Query: 139 ER 140
           ++
Sbjct: 577 DK 578


>gi|330834494|ref|YP_004409222.1| putative pyruvate: ferredoxin oxidoreductase, alpha- and delta
           subunit [Metallosphaera cuprina Ar-4]
 gi|329566633|gb|AEB94738.1| putative pyruvate: ferredoxin oxidoreductase, alpha- and delta
           subunit [Metallosphaera cuprina Ar-4]
          Length = 605

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 21/65 (32%), Gaps = 10/65 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ERC  C +C       AI      +            I+  +CI CG C   CP  AI
Sbjct: 540 DSERCTGCTICYDHFTCPAILKLENKKAV----------INQNECIGCGACVPVCPYKAI 589

Query: 119 VEGPN 123
                
Sbjct: 590 TLEGE 594


>gi|307596094|ref|YP_003902411.1| pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta
           [Vulcanisaeta distributa DSM 14429]
 gi|307551295|gb|ADN51360.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Vulcanisaeta distributa DSM 14429]
          Length = 91

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 24/75 (32%), Gaps = 10/75 (13%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G   + R      +C  C +C   CP   I                   ID   C  CG+
Sbjct: 24  GTWRVYRPVINYSKCTKCGICWLYCPENVIEWLEDKNV----------RIDYNYCKGCGI 73

Query: 109 CQEACPVDAIVEGPN 123
           C + CPV AI     
Sbjct: 74  CADVCPVKAIDMVKE 88


>gi|304558979|gb|ADM41643.1| Electron transport complex protein RnfC [Edwardsiella tarda FL6-60]
          Length = 773

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 39/113 (34%), Gaps = 23/113 (20%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C  +CPA+ +  +       G       D  + +CI CG C   CP      
Sbjct: 376 QPCIRCGACADVCPAR-LLPQQLYWYSQGKEHDKARDYHLQECIECGACAYVCP------ 428

Query: 121 GPNFEFATETRQELYYDKERLLNNGD----------RWESEIVRNIVTDSPYR 163
             N       RQE    K  +    D          R+E+ + R +  +   R
Sbjct: 429 -SNIPLVQYYRQE----KAEIRALDDEARRAAEAKARFEARLAR-LAREKAAR 475


>gi|284007515|emb|CBA73011.1| Electron transport complex protein rnfC [Arsenophonus nasoniae]
          Length = 586

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 3/101 (2%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C LC   CPA  +  +       G         ++  CI CG C   CP   I    
Sbjct: 380 CIRCGLCTQACPAN-LLPQQLYWFSRGQEHEKAEKYNLSDCIECGACAYVCP-SNIPLVQ 437

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            +       + +  +K+R  +   R+E++  R +  +   R
Sbjct: 438 YYRQEKAEIKAIAREKQRASDAKKRFEAKKAR-LEREKILR 477



 Score = 33.9 bits (76), Expect = 7.9,   Method: Composition-based stats.
 Identities = 9/15 (60%), Positives = 10/15 (66%)

Query: 100 MIKCIYCGLCQEACP 114
              CI CGLC +ACP
Sbjct: 377 EEACIRCGLCTQACP 391


>gi|269139047|ref|YP_003295748.1| electron transport complex protein [Edwardsiella tarda EIB202]
 gi|267984708|gb|ACY84537.1| electron transport complex protein [Edwardsiella tarda EIB202]
          Length = 767

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/113 (23%), Positives = 39/113 (34%), Gaps = 23/113 (20%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C  +CPA+ +  +       G       D  + +CI CG C   CP      
Sbjct: 376 QPCIRCGACADVCPAR-LLPQQLYWYSQGKEHDKARDYHLQECIECGACAYVCP------ 428

Query: 121 GPNFEFATETRQELYYDKERLLNNGD----------RWESEIVRNIVTDSPYR 163
             N       RQE    K  +    D          R+E+ + R +  +   R
Sbjct: 429 -SNIPLVQYYRQE----KAEIRALDDEARRAAEAKARFEARLAR-LAREKAAR 475


>gi|222086790|ref|YP_002545324.1| dihydroorotate oxidase protein [Agrobacterium radiobacter K84]
 gi|221724238|gb|ACM27394.1| dihydroorotate oxidase protein [Agrobacterium radiobacter K84]
          Length = 437

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 6/76 (7%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI C  C       A    S     +       +++   +C+ 
Sbjct: 330 QYLNLNYIAKAKIDQDACIKCGRCYI-----ACEDTSHQAITNMVDGARHFEVMDEECVG 384

Query: 106 CGLCQEACPV-DAIVE 120
           C LC   CPV + I  
Sbjct: 385 CNLCVSVCPVENCITM 400


>gi|218689575|ref|YP_002397787.1| electron transport complex protein RnfB [Escherichia coli ED1a]
 gi|331647117|ref|ZP_08348211.1| electron transport complex protein RnfB [Escherichia coli M605]
 gi|254807925|sp|B7MV10|RNFB_ECO81 RecName: Full=Electron transport complex protein rnfB
 gi|218427139|emb|CAR07926.1| putative iron-sulfur protein [Escherichia coli ED1a]
 gi|281178700|dbj|BAI55030.1| conserved hypothetical protein [Escherichia coli SE15]
 gi|330911435|gb|EGH39945.1| electron transport complex protein RnfB [Escherichia coli AA86]
 gi|331043900|gb|EGI16036.1| electron transport complex protein RnfB [Escherichia coli M605]
          Length = 192

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   +             + +    C  C LC + CP   I
Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTHCI 162

Query: 119 VEGPNFEFATETRQEL 134
              P  E     + +L
Sbjct: 163 SLQPVAETPDSWKWDL 178



 Score = 35.5 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C  C +ACPVDAI
Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132


>gi|215486805|ref|YP_002329236.1| electron transport complex protein RnfB [Escherichia coli O127:H6
           str. E2348/69]
 gi|312966608|ref|ZP_07780828.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli 2362-75]
 gi|254807923|sp|B7URW9|RNFB_ECO27 RecName: Full=Electron transport complex protein rnfB
 gi|215264877|emb|CAS09263.1| predicted iron-sulfur protein [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312288718|gb|EFR16618.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli 2362-75]
          Length = 192

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   +             + +    C  C LC + CP   I
Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTHCI 162

Query: 119 VEGPNFEFATETRQEL 134
              P  E     + +L
Sbjct: 163 SLQPVAETPDSWKWDL 178



 Score = 35.5 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C  C +ACPVDAI
Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132


>gi|209921878|ref|YP_002295957.1| anaerobic sulfite reductase subunit C [Escherichia coli SE11]
 gi|209915371|dbj|BAG80442.1| anaerobic sulfite reductase subunit C [Escherichia coli SE11]
          Length = 337

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 27/94 (28%), Gaps = 8/94 (8%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
                  P +    S    G   + R     ERCI C  C   C   A+   S       
Sbjct: 147 KTVIAGCPNDCAKASMSDFGIIGVARMRFTAERCIGCGACVKACAHHAVGCLSLKNGKAA 206

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                    +   CI CG C  ACP  A    P 
Sbjct: 207 K--------EESLCIGCGECVLACPTLAWQRQPQ 232


>gi|188587655|ref|YP_001920981.1| nitroreductase family protein fused to ferredoxin domain
           [Clostridium botulinum E3 str. Alaska E43]
 gi|188497936|gb|ACD51072.1| nitroreductase family protein [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 273

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 16/103 (15%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            +   +E+CI+CK C   CP   I +  G             +I    CI CG C   CP
Sbjct: 1   MFEVNKEKCISCKQCINDCPVSDILLIDGKA-----------NIKNESCIKCGHCIAICP 49

Query: 115 VDAIVEGPNF---EFATETRQELYYDKERLLNNGDRWESEIVR 154
             A+    ++   E     + E   + + LL N  ++   + +
Sbjct: 50  TKAVS-TDDYNMDEVKEYNKSEFSIESDNLL-NFIKFRRSVRK 90


>gi|170754614|ref|YP_001782424.1| dihydropyrimidine dehydrogenase [Clostridium botulinum B1 str.
           Okra]
 gi|169119826|gb|ACA43662.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum
           B1 str. Okra]
          Length = 411

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 7/110 (6%)

Query: 15  EFVGAFFLCLRY-FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
           + +      ++   F+    +     K            +      EE C+ C  C   C
Sbjct: 295 DMIEGLSYYMKEKGFEKLEDMVGLANKNIIPAEDLDRGYIVYPKFNEENCVGCGRCYISC 354

Query: 74  PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                    G +      +  +  ++   C+ C LC   CPV  I +G  
Sbjct: 355 YDG------GHQAIKWDGKNRKPILEKENCVGCHLCANVCPVQCISKGEI 398


>gi|138894138|ref|YP_001124591.1| formate dehydrogenase chain A [Geobacillus thermodenitrificans
           NG80-2]
 gi|134265651|gb|ABO65846.1| Formate dehydrogenase chain A [Geobacillus thermodenitrificans
           NG80-2]
          Length = 988

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 27/83 (32%), Gaps = 3/83 (3%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---YD 97
                    + +   Y     +CIAC  C   C    +             R V      
Sbjct: 130 RPKVDPSEVDMSHPFYRYDPNQCIACGQCVEACQNLQVNETLSIDWEAERPRVVWDGGVP 189

Query: 98  IDMIKCIYCGLCQEACPVDAIVE 120
           I+   C+ CG C   CP +A++E
Sbjct: 190 INESSCVSCGHCVTVCPCNALME 212



 Score = 38.5 bits (88), Expect = 0.30,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q           +       Y  D  +
Sbjct: 92  RLLENHLLYCTVCDNNNGNCKLHNTTEMMQIEHQTYPYRPKVDPSEVDMSHPFYRYDPNQ 151

Query: 103 CIYCGLCQEAC 113
           CI CG C EAC
Sbjct: 152 CIACGQCVEAC 162


>gi|125973687|ref|YP_001037597.1| hypothetical protein Cthe_1172 [Clostridium thermocellum ATCC
           27405]
 gi|256005771|ref|ZP_05430724.1| protein of unknown function DUF362 [Clostridium thermocellum DSM
           2360]
 gi|281417844|ref|ZP_06248864.1| protein of unknown function DUF362 [Clostridium thermocellum JW20]
 gi|125713912|gb|ABN52404.1| protein of unknown function DUF362 [Clostridium thermocellum ATCC
           27405]
 gi|255990271|gb|EEU00400.1| protein of unknown function DUF362 [Clostridium thermocellum DSM
           2360]
 gi|281409246|gb|EFB39504.1| protein of unknown function DUF362 [Clostridium thermocellum JW20]
 gi|316940117|gb|ADU74151.1| iron-sulfur cluster-binding protein [Clostridium thermocellum DSM
           1313]
          Length = 382

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 6/84 (7%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           PF+ G     FR     + Y   + +CI C +C       A  ++          +    
Sbjct: 292 PFKPGGAIQFFRNFIVPKPY-ILKNKCIKCGVC-----VNACPVKPKAVDWHNGNKKEPP 345

Query: 97  DIDMIKCIYCGLCQEACPVDAIVE 120
                +CI C  CQE CP  AI  
Sbjct: 346 TYIYKRCIRCYCCQELCPESAIHL 369


>gi|16129586|ref|NP_416145.1| electron transport complex protein, iron-sulfur protein, required
           for the reduction of SoxR [Escherichia coli str. K-12
           substr. MG1655]
 gi|89108470|ref|AP_002250.1| predicted iron-sulfur protein [Escherichia coli str. K-12 substr.
           W3110]
 gi|157161090|ref|YP_001458408.1| electron transport complex protein RnfB [Escherichia coli HS]
 gi|170020020|ref|YP_001724974.1| electron transport complex protein RnfB [Escherichia coli ATCC
           8739]
 gi|170081292|ref|YP_001730612.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Escherichia coli str. K-12 substr. DH10B]
 gi|193070250|ref|ZP_03051194.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli E110019]
 gi|194431902|ref|ZP_03064192.1| electron transport complex, RnfABCDGE type, B subunit [Shigella
           dysenteriae 1012]
 gi|194436652|ref|ZP_03068753.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli 101-1]
 gi|218554196|ref|YP_002387109.1| electron transport complex protein RnfB [Escherichia coli IAI1]
 gi|238900844|ref|YP_002926640.1| putative iron-sulfur protein [Escherichia coli BW2952]
 gi|253773414|ref|YP_003036245.1| electron transport complex protein RnfB [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161690|ref|YP_003044798.1| electron transport complex protein RnfB [Escherichia coli B str.
           REL606]
 gi|256018179|ref|ZP_05432044.1| electron transport complex protein RnfB [Shigella sp. D9]
 gi|256022711|ref|ZP_05436576.1| electron transport complex protein RnfB [Escherichia sp. 4_1_40B]
 gi|260855453|ref|YP_003229344.1| putative iron-sulfur protein [Escherichia coli O26:H11 str. 11368]
 gi|260868120|ref|YP_003234522.1| putative iron-sulfur protein [Escherichia coli O111:H- str. 11128]
 gi|300819311|ref|ZP_07099510.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 107-1]
 gi|300931502|ref|ZP_07146820.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 187-1]
 gi|300950448|ref|ZP_07164366.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 116-1]
 gi|300959101|ref|ZP_07171189.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 175-1]
 gi|301029279|ref|ZP_07192384.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 196-1]
 gi|301647800|ref|ZP_07247588.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 146-1]
 gi|307138282|ref|ZP_07497638.1| electron transport complex protein RnfB [Escherichia coli H736]
 gi|312969649|ref|ZP_07783832.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli 1827-70]
 gi|331642221|ref|ZP_08343356.1| electron transport complex protein RnfB [Escherichia coli H736]
 gi|332279227|ref|ZP_08391640.1| ferredoxin II [Shigella sp. D9]
 gi|6176588|sp|P77223|RNFB_ECOLI RecName: Full=Electron transport complex protein rnfB
 gi|166991042|sp|A8A0H1|RNFB_ECOHS RecName: Full=Electron transport complex protein rnfB
 gi|189043385|sp|B1IQC6|RNFB_ECOLC RecName: Full=Electron transport complex protein rnfB
 gi|226735414|sp|B7M0I5|RNFB_ECO8A RecName: Full=Electron transport complex protein rnfB
 gi|226735415|sp|B1XF93|RNFB_ECODH RecName: Full=Electron transport complex protein rnfB
 gi|259646559|sp|C4ZY91|RNFB_ECOBW RecName: Full=Electron transport complex protein rnfB
 gi|1742687|dbj|BAA15383.1| predicted iron-sulfur protein [Escherichia coli str. K12 substr.
           W3110]
 gi|1787915|gb|AAC74700.1| electron transport complex protein, iron-sulfur protein, required
           for the reduction of SoxR [Escherichia coli str. K-12
           substr. MG1655]
 gi|157066770|gb|ABV06025.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli HS]
 gi|169754948|gb|ACA77647.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli ATCC 8739]
 gi|169889127|gb|ACB02834.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Escherichia coli str. K-12 substr. DH10B]
 gi|192956431|gb|EDV86890.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli E110019]
 gi|194419810|gb|EDX35889.1| electron transport complex, RnfABCDGE type, B subunit [Shigella
           dysenteriae 1012]
 gi|194424684|gb|EDX40670.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli 101-1]
 gi|218360964|emb|CAQ98537.1| putative iron-sulfur protein [Escherichia coli IAI1]
 gi|238862599|gb|ACR64597.1| predicted iron-sulfur protein [Escherichia coli BW2952]
 gi|242377359|emb|CAQ32105.1| member of SoxR-reducing complex [Escherichia coli BL21(DE3)]
 gi|253324458|gb|ACT29060.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
 gi|253973591|gb|ACT39262.1| electron transport complex protein RnfB [Escherichia coli B str.
           REL606]
 gi|253977786|gb|ACT43456.1| electron transport complex protein RnfB [Escherichia coli
           BL21(DE3)]
 gi|257754102|dbj|BAI25604.1| predicted iron-sulfur protein [Escherichia coli O26:H11 str. 11368]
 gi|257764476|dbj|BAI35971.1| predicted iron-sulfur protein [Escherichia coli O111:H- str. 11128]
 gi|260449248|gb|ACX39670.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli DH1]
 gi|299877815|gb|EFI86026.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 196-1]
 gi|300314289|gb|EFJ64073.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 175-1]
 gi|300450216|gb|EFK13836.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 116-1]
 gi|300460705|gb|EFK24198.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 187-1]
 gi|300528082|gb|EFK49144.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 107-1]
 gi|301074084|gb|EFK88890.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 146-1]
 gi|309701854|emb|CBJ01166.1| electron transport complex protein [Escherichia coli ETEC H10407]
 gi|310337934|gb|EFQ03023.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli 1827-70]
 gi|315136269|dbj|BAJ43428.1| electron transport complex protein RnfB [Escherichia coli DH1]
 gi|315618814|gb|EFU99397.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli 3431]
 gi|323152868|gb|EFZ39138.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli EPECa14]
 gi|323180942|gb|EFZ66480.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli 1180]
 gi|323186100|gb|EFZ71456.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli 1357]
 gi|323937423|gb|EGB33701.1| electron transporter [Escherichia coli E1520]
 gi|323940295|gb|EGB36487.1| electron transporter [Escherichia coli E482]
 gi|323962198|gb|EGB57792.1| electron transporter [Escherichia coli H489]
 gi|323973846|gb|EGB69019.1| electron transporter [Escherichia coli TA007]
 gi|331039019|gb|EGI11239.1| electron transport complex protein RnfB [Escherichia coli H736]
 gi|332091212|gb|EGI96301.1| electron transport complex, RnfABCDGE type, B subunit [Shigella
           boydii 5216-82]
 gi|332101579|gb|EGJ04925.1| ferredoxin II [Shigella sp. D9]
 gi|332343346|gb|AEE56680.1| electron transport complex RnfB [Escherichia coli UMNK88]
          Length = 192

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   +             + +    C  C LC + CP   I
Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTHCI 162

Query: 119 VEGPNFEFATETRQEL 134
              P  E     + +L
Sbjct: 163 SLQPVAETPDSWKWDL 178



 Score = 35.5 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C  C +ACPVDAI
Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132


>gi|319641468|ref|ZP_07996159.1| pyruvate-flavodoxin oxidoreductase [Bacteroides sp. 3_1_40A]
 gi|317386901|gb|EFV67789.1| pyruvate-flavodoxin oxidoreductase [Bacteroides sp. 3_1_40A]
          Length = 1181

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 31/90 (34%), Gaps = 15/90 (16%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGP 84
           E+G+     RG  A     N  E CI C  C  +CP                A       
Sbjct: 667 EQGTAQYEKRGVAAFVPEWN-AENCIQCNKCAYVCPHASIRPFVLDAEEQKGADFETLKA 725

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                   T R  +D++ C+ CG C + CP
Sbjct: 726 VGKQFDGMTFRIQVDVLDCLGCGNCADVCP 755


>gi|307310801|ref|ZP_07590447.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli W]
 gi|306908979|gb|EFN39475.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli W]
 gi|315060935|gb|ADT75262.1| electron transport complex protein RnfCB [Escherichia coli W]
 gi|323378494|gb|ADX50762.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli KO11]
          Length = 192

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   +             + +    C  C LC + CP   I
Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAIHTVMSDLCTGCNLCVDPCPTHCI 162

Query: 119 VEGPNFEFATETRQEL 134
              P  E     + +L
Sbjct: 163 SLQPVAETPDSWKWDL 178



 Score = 35.5 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C  C +ACPVDAI
Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132


>gi|303243585|ref|ZP_07329927.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
 gi|302486146|gb|EFL49068.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
          Length = 355

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 31/72 (43%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G    R     +  C+ C +C  ICP  AI +        G     + DID  KC+ CG+
Sbjct: 20  GTVENRVLNWNDNMCVGCGICSDICPVGAIEMGPLGAIFKGDIEAPKLDIDNKKCVLCGM 79

Query: 109 CQEACPVDAIVE 120
           C  ACP  A+  
Sbjct: 80  CASACPFGAMDL 91



 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 32/71 (45%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R    L      +E C+ C +C   CPA AI +  G              +D   C+YC 
Sbjct: 142 RKTLVLGEININKETCVLCGICADYCPADAIELVPGEMNALNLNPYSDIVVDTDACVYCK 201

Query: 108 LCQEACPVDAI 118
           +C++ACP +AI
Sbjct: 202 VCEKACPHNAI 212



 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 4/84 (4%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT----IESGPRCHDGTRRTV 94
           E G     F+G+    +     ++C+ C +C + CP  A+       S        +   
Sbjct: 50  EMGPLGAIFKGDIEAPKLDIDNKKCVLCGMCASACPFGAMDLKIDGTSIKELPQYPKIKR 109

Query: 95  RYDIDMIKCIYCGLCQEACPVDAI 118
              ++  KC+ C  C+  CP  AI
Sbjct: 110 DITLNQDKCVLCEQCEMVCPQCAI 133



 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +++C+ C+ CE +CP Q             T      +I+   C+ CG+C + CP DAI
Sbjct: 114 NQDKCVLCEQCEMVCP-QCAIEVERELPERKTLVLGEININKETCVLCGICADYCPADAI 172

Query: 119 VEGP 122
              P
Sbjct: 173 ELVP 176



 Score = 41.2 bits (95), Expect = 0.051,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 40/115 (34%), Gaps = 17/115 (14%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPN---GEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
            P +     P       L  Y +     + C+ CK+CE  CP  AI +           +
Sbjct: 167 CPADAIELVPGEMNALNLNPYSDIVVDTDACVYCKVCEKACPHNAIEVICYKCPLANRIK 226

Query: 93  TV--------RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139
                     +  I+   C+ C  C+  CP DA+     FE       EL  D++
Sbjct: 227 KPELYKEITGKTTINKNLCVSCSWCENVCPADALSVEKPFE------GELIIDED 275



 Score = 40.5 bits (93), Expect = 0.074,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 3/87 (3%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            + ++             +         E+ C AC  C AICP  A+     P+     +
Sbjct: 246 VSCSWCENVCPADALSVEKPFEGELIIDEDACNACGACIAICPCNALVF---PKSEGQAQ 302

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAI 118
              +  ++   CI CG C  ACPV+A+
Sbjct: 303 IAPKIAVNPNVCILCGACTHACPVNAL 329


>gi|298488743|ref|ZP_07006772.1| Electron transport complex protein rnfB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298156816|gb|EFH97907.1| Electron transport complex protein rnfB [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 290

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 10/75 (13%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           RG    +     E  CI C  C   CP  AI   +           + + + + +C  C 
Sbjct: 76  RGAAPAQVAFIREAECIGCTKCIQACPVDAIVGAAK----------LMHTVIVDECTGCD 125

Query: 108 LCQEACPVDAIVEGP 122
           LC   CPVD I   P
Sbjct: 126 LCVAPCPVDCIEMHP 140


>gi|295087525|emb|CBK69048.1| hydrogenases, Fe-only [Bacteroides xylanisolvens XB1A]
          Length = 599

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 5/89 (5%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVR 95
           PF  G  SPR R   A        ++CI C+ CE++C   Q +      R    T     
Sbjct: 142 PFNGGELSPRKREITA--SIVRNMDKCIFCRRCESVCNDVQTVGALGAIRRGFNTTIAPA 199

Query: 96  YDIDM--IKCIYCGLCQEACPVDAIVEGP 122
           +D  M   +C YCG C   CPV A+ E  
Sbjct: 200 FDRMMTESECTYCGQCVAVCPVGALTERD 228



 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 5/67 (7%)

Query: 52  ALRRYPNGEERCIACKLCEAICPA-----QAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
            L  +PN    C  C  CE    A     + +    G         T     +M KCI+C
Sbjct: 110 ILSDHPNDCLTCPKCGNCELQTLALRFNIREMPFNGGELSPRKREITASIVRNMDKCIFC 169

Query: 107 GLCQEAC 113
             C+  C
Sbjct: 170 RRCESVC 176


>gi|282857149|ref|ZP_06266393.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Pyramidobacter piscolens W5455]
 gi|282584935|gb|EFB90259.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Pyramidobacter piscolens W5455]
          Length = 390

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 23/67 (34%), Gaps = 6/67 (8%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                 EE+CI C  C   CP  AIT+E                I    C+ C  C   C
Sbjct: 196 VHLEVDEEKCIGCGRCFRNCPGHAITMEKDAAGK------TTSHIHAEPCLGCCECMTVC 249

Query: 114 PVDAIVE 120
           P  A+  
Sbjct: 250 PTQAVGM 256



 Score = 39.7 bits (91), Expect = 0.12,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 18/44 (40%)

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +   P      +  V  ++D  KCI CG C   CP  AI    +
Sbjct: 182 MGCAPARGKKAQHAVHLEVDEEKCIGCGRCFRNCPGHAITMEKD 225


>gi|260171116|ref|ZP_05757528.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D2]
 gi|315919436|ref|ZP_07915676.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D2]
 gi|313693311|gb|EFS30146.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D2]
          Length = 588

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 5/89 (5%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVR 95
           PF  G  SPR R   A        ++CI C+ CE++C   Q +      R    T     
Sbjct: 131 PFNGGELSPRKREITA--SIVRNMDKCIFCRRCESVCNDVQTVGALGAIRRGFNTTIAPA 188

Query: 96  YDIDM--IKCIYCGLCQEACPVDAIVEGP 122
           +D  M   +C YCG C   CPV A+ E  
Sbjct: 189 FDRMMTESECTYCGQCVAVCPVGALTERD 217



 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 5/67 (7%)

Query: 52  ALRRYPNGEERCIACKLCEAICPA-----QAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
            L  +PN    C  C  CE    A     + +    G         T     +M KCI+C
Sbjct: 99  ILSDHPNDCLTCPKCGNCELQTLALRFNIREMPFNGGELSPRKREITASIVRNMDKCIFC 158

Query: 107 GLCQEAC 113
             C+  C
Sbjct: 159 RRCESVC 165


>gi|257467683|ref|ZP_05631779.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium ulcerans ATCC
           49185]
 gi|317061977|ref|ZP_07926462.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium ulcerans ATCC
           49185]
 gi|313687653|gb|EFS24488.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium ulcerans ATCC
           49185]
          Length = 585

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 59  GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQEACPV 115
              +CI C+ CE +C   Q   I +G            ++  +    C +CG C   CPV
Sbjct: 148 DITKCIMCRRCETMCGDIQTCGILTGIDRGFNVVVNTAFNRNLIETDCTFCGQCVAVCPV 207

Query: 116 DAIVEGPN 123
            A+ E  N
Sbjct: 208 GALYETDN 215


>gi|237715806|ref|ZP_04546287.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D1]
 gi|262407421|ref|ZP_06083969.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_22]
 gi|294646920|ref|ZP_06724541.1| putative ferredoxin hydrogenase [Bacteroides ovatus SD CC 2a]
 gi|294810789|ref|ZP_06769435.1| putative ferredoxin hydrogenase [Bacteroides xylanisolvens SD CC
           1b]
 gi|229443453|gb|EEO49244.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D1]
 gi|262354229|gb|EEZ03321.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_22]
 gi|292637865|gb|EFF56262.1| putative ferredoxin hydrogenase [Bacteroides ovatus SD CC 2a]
 gi|294441977|gb|EFG10798.1| putative ferredoxin hydrogenase [Bacteroides xylanisolvens SD CC
           1b]
          Length = 588

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 5/89 (5%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVR 95
           PF  G  SPR R   A        ++CI C+ CE++C   Q +      R    T     
Sbjct: 131 PFNGGELSPRKREITA--SIVRNMDKCIFCRRCESVCNDVQTVGALGAIRRGFNTTIAPA 188

Query: 96  YDIDM--IKCIYCGLCQEACPVDAIVEGP 122
           +D  M   +C YCG C   CPV A+ E  
Sbjct: 189 FDRMMTESECTYCGQCVAVCPVGALTERD 217



 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 5/67 (7%)

Query: 52  ALRRYPNGEERCIACKLCEAICPA-----QAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
            L  +PN    C  C  CE    A     + +    G         T     +M KCI+C
Sbjct: 99  ILSDHPNDCLTCPKCGNCELQTLALRFNIREMPFNGGELSPRKREITASIVRNMDKCIFC 158

Query: 107 GLCQEAC 113
             C+  C
Sbjct: 159 RRCESVC 165


>gi|210620595|ref|ZP_03292143.1| hypothetical protein CLOHIR_00086 [Clostridium hiranonis DSM 13275]
 gi|210155309|gb|EEA86315.1| hypothetical protein CLOHIR_00086 [Clostridium hiranonis DSM 13275]
          Length = 211

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 8/72 (11%)

Query: 47  FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
           F GE   ++     ++CI C  C  +CP   I  +         +   +  I+ + C+ C
Sbjct: 144 FGGESKEKKGYFVTDKCINCGRCIEVCPQNCIVED--------QKNWNQVKINHLNCLSC 195

Query: 107 GLCQEACPVDAI 118
           G C E CPV+AI
Sbjct: 196 GNCVEVCPVEAI 207


>gi|254468948|ref|ZP_05082354.1| electron transport complex protein RnfC [beta proteobacterium KB13]
 gi|207087758|gb|EDZ65041.1| electron transport complex protein RnfC [beta proteobacterium KB13]
          Length = 503

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 2/74 (2%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            CI C  C  +CPAQ    E            +  D  +  CI CG C   CP   I   
Sbjct: 365 PCIRCTKCVEVCPAQLQPQELYWHAKSKQFEKLTEDYKLFDCIECGCCSYVCP-SNIPLV 423

Query: 122 PNFEFA-TETRQEL 134
             + +A +E R +L
Sbjct: 424 QYYRYAKSEIRDQL 437


>gi|188585874|ref|YP_001917419.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350561|gb|ACB84831.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 604

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 16/98 (16%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
             L+Y F+ +   +    +        G        +  + CI C +C+  CP  AI+ +
Sbjct: 502 TTLKY-FRDEYEAHVKENRCPA-----GTCKELIAFSITDDCIGCGVCKKSCPVGAISGD 555

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
                         + ID  +C+ CG+C  AC  DAI 
Sbjct: 556 KKE----------IHIIDQEECVKCGMCVSACKFDAIH 583



 Score = 40.5 bits (93), Expect = 0.088,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 8/61 (13%)

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139
                RC  GT + +        CI CG+C+++CPV AI        + + ++    D+E
Sbjct: 514 HVKENRCPAGTCKELIAFSITDDCIGCGVCKKSCPVGAI--------SGDKKEIHIIDQE 565

Query: 140 R 140
            
Sbjct: 566 E 566


>gi|167761403|ref|ZP_02433530.1| hypothetical protein CLOSCI_03813 [Clostridium scindens ATCC 35704]
 gi|167661069|gb|EDS05199.1| hypothetical protein CLOSCI_03813 [Clostridium scindens ATCC 35704]
          Length = 314

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 15/86 (17%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L  Y   + +C++C  C   C                    +  +    +CI CG C + 
Sbjct: 235 LLNYNVDKHKCVSCGKCSRTCKMD---------------VDITKNTSHTECIRCGECIKV 279

Query: 113 CPVDAIVEGPNFEFATETRQELYYDK 138
           CP  AI      +   E +++   +K
Sbjct: 280 CPAKAISVHWGVKNPVENKEDKIINK 305


>gi|150006276|ref|YP_001301020.1| pyruvate-flavodoxin oxidoreductase [Bacteroides vulgatus ATCC 8482]
 gi|294776528|ref|ZP_06742002.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides
           vulgatus PC510]
 gi|149934700|gb|ABR41398.1| pyruvate-flavodoxin oxidoreductase [Bacteroides vulgatus ATCC 8482]
 gi|294449657|gb|EFG18183.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides
           vulgatus PC510]
          Length = 1181

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 31/90 (34%), Gaps = 15/90 (16%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGP 84
           E+G+     RG  A     N  E CI C  C  +CP                A       
Sbjct: 667 EQGTAQYEKRGVAAFVPEWN-AENCIQCNKCAYVCPHASIRPFVLDAEEQKGADFETLKA 725

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                   T R  +D++ C+ CG C + CP
Sbjct: 726 VGKQFDGMTFRIQVDVLDCLGCGNCADVCP 755


>gi|197117222|ref|YP_002137649.1| hypothetical protein Gbem_0830 [Geobacter bemidjiensis Bem]
 gi|197086582|gb|ACH37853.1| conserved hypothetical protein [Geobacter bemidjiensis Bem]
          Length = 435

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             C  C  C   CPA+A+ + S         R    D    +C+ CG+C   C   AI  
Sbjct: 290 TECSGCGRCIDACPAEAVRLISANAPQHPWLRRCVQD--SERCLGCGVCVRVCRSAAITL 347

Query: 121 GPNFE 125
            P  E
Sbjct: 348 KPRAE 352


>gi|150020389|ref|YP_001305743.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429]
 gi|149792910|gb|ABR30358.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429]
          Length = 623

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 33/69 (47%), Gaps = 10/69 (14%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           AL++Y    E C +C LC   CP  AI+ E G            Y ID  KCI CG+C E
Sbjct: 564 ALKKYVINPELCKSCSLCARACPQNAISGERGKP----------YVIDQEKCIKCGICFE 613

Query: 112 ACPVDAIVE 120
            C  +AI  
Sbjct: 614 KCKFNAIEL 622


>gi|325497184|gb|EGC95043.1| electron transport complex protein RnfB [Escherichia fergusonii
           ECD227]
          Length = 192

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   +             + +    C  C LC + CP   I
Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTQCI 162

Query: 119 VEGPNFEFATETRQEL 134
              P  E     + +L
Sbjct: 163 SLQPVAETPDSWKWDL 178



 Score = 35.5 bits (80), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C  C +ACPVDAI
Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132


>gi|300921315|ref|ZP_07137682.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 115-1]
 gi|300411734|gb|EFJ95044.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 115-1]
          Length = 192

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   +             + +    C  C LC + CP   I
Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSELCTGCNLCVDPCPTHCI 162

Query: 119 VEGPNFEFATETRQEL 134
              P  E     + +L
Sbjct: 163 SLQPVAETPDSWKWDL 178



 Score = 35.5 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C  C +ACPVDAI
Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132


>gi|269215967|ref|ZP_06159821.1| ferredoxin-type protein NapH [Slackia exigua ATCC 700122]
 gi|269130226|gb|EEZ61304.1| ferredoxin-type protein NapH [Slackia exigua ATCC 700122]
          Length = 308

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 7/74 (9%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G   L       ERC+ C  C A+C          P   DG        +    C+ CG 
Sbjct: 219 GTFGLVSVKMDAERCVHCDACRAVCLCD-------PEILDGVLDEGADHVSAGDCMLCGR 271

Query: 109 CQEACPVDAIVEGP 122
           C + CP DA+  GP
Sbjct: 272 CIDVCPTDALSIGP 285


>gi|226950228|ref|YP_002805319.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum
           A2 str. Kyoto]
 gi|226840903|gb|ACO83569.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum
           A2 str. Kyoto]
          Length = 411

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 7/110 (6%)

Query: 15  EFVGAFFLCLRY-FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
           + +      ++   F+    +     K            +      EE C+ C  C   C
Sbjct: 295 DMIEGLSYYMKEKGFEKLEDMVGLANKNIIPAEDLDRGYIVYPKFNEENCVGCGRCYISC 354

Query: 74  PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                    G +      +  +  ++   C+ C LC   CPV  I +G  
Sbjct: 355 YDG------GHQAIKWDGKNRKPILEKENCVGCHLCANVCPVQCISKGEI 398


>gi|170761060|ref|YP_001786579.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169408049|gb|ACA56460.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 1172

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/126 (22%), Positives = 44/126 (34%), Gaps = 24/126 (19%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA---QAITIESGPRCHDGTRRTV--- 94
           G+TS   RG   +       ++CI C  C  ICP    +A  +    +    +R      
Sbjct: 668 GTTSYEKRGIAVMIPEWQ-IDKCIQCNQCSYICPHSVIRAYLLNKDEKEKAPSRFETKKA 726

Query: 95  ----------RYDIDMIKCIYCGLCQEACPVD--AIVEGP---NFEFATETRQ--ELYYD 137
                     R  I  + C  CG C + CP    A++        E  +E  +       
Sbjct: 727 AGKGLEELGYRIQISPLDCTGCGNCADVCPAPGKALIMKNAEEQIEMQSENWEFGLNITT 786

Query: 138 KERLLN 143
           KE L++
Sbjct: 787 KENLMD 792


>gi|270308756|ref|YP_003330814.1| reductive dehalogenase [Dehalococcoides sp. VS]
 gi|270154648|gb|ACZ62486.1| reductive dehalogenase [Dehalococcoides sp. VS]
          Length = 491

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 3/74 (4%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIE---SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
              G E C  C +C   CP  AI+ +               + +  DM  C +C +CQ  
Sbjct: 372 DFGGREFCKTCGICADACPMGAISKDEPTWDAAKPYQYGGYLTWRTDMAVCSHCPVCQGT 431

Query: 113 CPVDAIVEGPNFEF 126
           CP +A  +    E 
Sbjct: 432 CPFNAFDKSGIHEL 445


>gi|160887580|ref|ZP_02068583.1| hypothetical protein BACOVA_05602 [Bacteroides ovatus ATCC 8483]
 gi|156107991|gb|EDO09736.1| hypothetical protein BACOVA_05602 [Bacteroides ovatus ATCC 8483]
          Length = 588

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 5/89 (5%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVR 95
           PF  G  SPR R   A        ++CI C+ CE++C   Q +      R    T     
Sbjct: 131 PFNGGELSPRKREITA--SIVRNMDKCIFCRRCESVCNDVQTVGALGAIRRGFNTTIAPA 188

Query: 96  YDIDM--IKCIYCGLCQEACPVDAIVEGP 122
           +D  M   +C YCG C   CPV A+ E  
Sbjct: 189 FDRMMTESECTYCGQCVAVCPVGALTERD 217



 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 5/67 (7%)

Query: 52  ALRRYPNGEERCIACKLCEAICPA-----QAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
            L  +PN    C  C  CE    A     + +    G         T     +M KCI+C
Sbjct: 99  ILSDHPNDCLTCPKCGNCELQTLALRFNIREMPFNGGELSPRKREITASIVRNMDKCIFC 158

Query: 107 GLCQEAC 113
             C+  C
Sbjct: 159 RRCESVC 165


>gi|126730473|ref|ZP_01746284.1| formate dehydrogenase, alpha subunit [Sagittula stellata E-37]
 gi|126709206|gb|EBA08261.1| formate dehydrogenase, alpha subunit [Sagittula stellata E-37]
          Length = 939

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 6/81 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114
             + CI C LC   C  +    +       G      +D    +    C+ CG C +ACP
Sbjct: 159 NLDACIQCGLCVRACR-EVQVNDVIGMAGRGHDAYPVFDLGDDMGASTCVACGECVQACP 217

Query: 115 VDAIVEGPNFEFATE-TRQEL 134
             A++       A E  R + 
Sbjct: 218 TGALMPSSVMNDAQEGDRADF 238



 Score = 33.9 bits (76), Expect = 7.8,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 19/56 (33%), Gaps = 1/56 (1%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL-CQ 110
              G   C+AC  C   CP  A+   S         R          C +CG+ CQ
Sbjct: 199 DDMGASTCVACGECVQACPTGALMPSSVMNDAQEGDRADFDQETKSVCPFCGVGCQ 254


>gi|18976905|ref|NP_578262.1| indolepyruvate ferredoxin oxidoreductase subunit a [Pyrococcus
           furiosus DSM 3638]
 gi|18892520|gb|AAL80657.1| indolepyruvate ferredoxin oxidoreductase subunit a [Pyrococcus
           furiosus DSM 3638]
          Length = 646

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 9/79 (11%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R       Y   EE+C  CK+C       AI  ++  +            +D + C  CG
Sbjct: 577 REGKQWPIYQVNEEKCTGCKVCINAYGCPAIYWDAEKKKA---------RVDPLMCWGCG 627

Query: 108 LCQEACPVDAIVEGPNFEF 126
            C + CP  A  +    E 
Sbjct: 628 GCAQVCPFGAFEKVREGEL 646


>gi|187733860|ref|YP_001880383.1| electron transport complex protein RnfB [Shigella boydii CDC
           3083-94]
 gi|226735434|sp|B2U2C7|RNFB_SHIB3 RecName: Full=Electron transport complex protein rnfB
 gi|187430852|gb|ACD10126.1| electron transport complex, RnfABCDGE type, B subunit [Shigella
           boydii CDC 3083-94]
          Length = 192

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   +             + +    C  C LC + CP   I
Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTHCI 162

Query: 119 VEGPNFEFATETRQEL 134
              P  E     + +L
Sbjct: 163 SLQPVAETPDSWKWDL 178



 Score = 35.5 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C  C +ACPVDAI
Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132


>gi|320181353|gb|EFW56272.1| Electron transport complex protein RnfB [Shigella boydii ATCC 9905]
          Length = 192

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   +             + +    C  C LC + CP   I
Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTHCI 162

Query: 119 VEGPNFEFATETRQEL 134
              P  E     + +L
Sbjct: 163 SLQPVAETPDSWKWDL 178



 Score = 35.5 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C  C +ACPVDAI
Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132


>gi|297527425|ref|YP_003669449.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Staphylothermus hellenicus DSM 12710]
 gi|297256341|gb|ADI32550.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Staphylothermus hellenicus DSM 12710]
          Length = 93

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 10/65 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              +C+ C LCE  CP   I +E                I+   C  CG+C + CPV+AI
Sbjct: 38  DNSKCVKCFLCEIYCPVNVIRVEPE----------TGVTINYDYCKGCGVCVDVCPVNAI 87

Query: 119 VEGPN 123
              P 
Sbjct: 88  KLVPE 92


>gi|253583179|ref|ZP_04860377.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium varium ATCC
           27725]
 gi|251833751|gb|EES62314.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium varium ATCC
           27725]
          Length = 585

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 59  GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQEACPV 115
              +CI C+ CE +C   Q   I +G            ++  +    C +CG C   CPV
Sbjct: 148 DITKCIMCRRCETMCGDIQTCGILTGIDRGFNVVVNTAFNRNLIETDCTFCGQCVAVCPV 207

Query: 116 DAIVEGPN 123
            A+ E  N
Sbjct: 208 GALYETDN 215


>gi|161503449|ref|YP_001570562.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|189043387|sp|A9MRW7|RNFB_SALAR RecName: Full=Electron transport complex protein rnfB
 gi|160864796|gb|ABX21419.1| hypothetical protein SARI_01523 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 192

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   +             + +    C  C LC + CP   I
Sbjct: 113 DENHCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTHCI 162

Query: 119 VEGPNFEFATETRQEL 134
              P  E     + +L
Sbjct: 163 ELRPVNETPDSWKWDL 178



 Score = 35.5 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C  C +ACPVDAI
Sbjct: 112 IDENHCIGCTKCIQACPVDAI 132


>gi|327192567|gb|EGE59517.1| dihydropyrimidine dehydrogenase protein [Rhizobium etli CNPAF512]
          Length = 437

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 32/76 (42%), Gaps = 6/76 (7%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI C  C   C     + ++     +G R    +++   +C+ 
Sbjct: 330 QYLNLNYIAKAKIDQDACIKCGRCYIACED--TSHQAITNVVNGLR---HFEVMDEECVG 384

Query: 106 CGLCQEACPV-DAIVE 120
           C LC   CPV + I  
Sbjct: 385 CNLCVSVCPVENCITM 400


>gi|300727115|ref|ZP_07060534.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Prevotella
           bryantii B14]
 gi|299775659|gb|EFI72250.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Prevotella
           bryantii B14]
          Length = 1196

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/135 (21%), Positives = 42/135 (31%), Gaps = 25/135 (18%)

Query: 12  FLKEFVGAFFLCLRYFFK-----AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIAC 66
           F+KE V           K        T++  ++ G+ +   RG        N  E CI C
Sbjct: 637 FVKELVRPMNAQAGDLLKVSDFVKHNTVDGTWQNGTAAYEKRGVETFVPVWN-VENCIQC 695

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK---------------CIYCGLCQE 111
             C  +CP  A+             +    DI   K               C+ CG C +
Sbjct: 696 NKCSFVCPHAAVRPFVLDEAEKANFQGATQDILAPKALKGMNFRIQVSVLDCLGCGNCAD 755

Query: 112 ACP----VDAIVEGP 122
            CP      A+   P
Sbjct: 756 VCPGKKGEKALKMVP 770


>gi|289191512|ref|YP_003457453.1| archaeoflavoprotein, MJ0208 family [Methanocaldococcus sp.
           FS406-22]
 gi|288937962|gb|ADC68717.1| archaeoflavoprotein, MJ0208 family [Methanocaldococcus sp.
           FS406-22]
          Length = 238

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 11/69 (15%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            Y   + +C  C  C  +CP  AI            +R    +I + KC+ CG C++ CP
Sbjct: 143 PYAIDKNKCKLCLKCINVCPNGAIA-----------KRDDFVEISLPKCLGCGNCKKVCP 191

Query: 115 VDAIVEGPN 123
            +AI+EG  
Sbjct: 192 YNAIIEGKE 200



 Score = 35.1 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 14/29 (48%)

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           Y ID  KC  C  C   CP  AI +  +F
Sbjct: 144 YAIDKNKCKLCLKCINVCPNGAIAKRDDF 172


>gi|225028462|ref|ZP_03717654.1| hypothetical protein EUBHAL_02737 [Eubacterium hallii DSM 3353]
 gi|224954212|gb|EEG35421.1| hypothetical protein EUBHAL_02737 [Eubacterium hallii DSM 3353]
          Length = 263

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 27/86 (31%), Gaps = 12/86 (13%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
              G+                  E CI C LC  +CP +AI+  +              +
Sbjct: 166 EVPGTFPYTKPPMGEFPFKVETNEYCIYCMLCADVCPVKAISESNPK------------E 213

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPN 123
           ID   C+ CG C   CP  A      
Sbjct: 214 IDSSICLRCGSCLRICPTQAKYFTEE 239



 Score = 38.5 bits (88), Expect = 0.32,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 14/26 (53%)

Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEF 126
             CIYC LC + CPV AI E    E 
Sbjct: 189 EYCIYCMLCADVCPVKAISESNPKEI 214


>gi|206895390|ref|YP_002246550.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit
           [Coprothermobacter proteolyticus DSM 5265]
 gi|206738007|gb|ACI17085.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit
           [Coprothermobacter proteolyticus DSM 5265]
          Length = 596

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 10/68 (14%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            AL  Y    ++C  C LC   CP  AI+ E              + I+   CI CG C 
Sbjct: 536 QALLSYTIVADKCKGCGLCARNCPVNAISGELKQP----------HVINQEACIKCGTCF 585

Query: 111 EACPVDAI 118
           E CP  AI
Sbjct: 586 EKCPFGAI 593



 Score = 40.9 bits (94), Expect = 0.055,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 17/40 (42%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            I          +  + Y I   KC  CGLC   CPV+AI
Sbjct: 524 HINQKKCPAGVCQALLSYTIVADKCKGCGLCARNCPVNAI 563


>gi|241205971|ref|YP_002977067.1| dihydropyrimidine dehydrogenase [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240859861|gb|ACS57528.1| dihydroorotate dehydrogenase family protein [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 437

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 6/94 (6%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI C  C       A    S     +       +++   +C+ 
Sbjct: 330 QYLNLNYIAKAKIDQDACIKCGRCYI-----ACEDTSHQAITNFVDGARHFEVVDEECVG 384

Query: 106 CGLCQEACPV-DAIVEGPNFEFATETRQELYYDK 138
           C LC   CPV + I        A + R     D 
Sbjct: 385 CNLCVSVCPVENCITMEQLPAGALDKRTGRVVDP 418


>gi|163749862|ref|ZP_02157107.1| iron-sulfur cluster-binding protein [Shewanella benthica KT99]
 gi|161330376|gb|EDQ01355.1| iron-sulfur cluster-binding protein [Shewanella benthica KT99]
          Length = 561

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 9/74 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + C  C  C + CP QA+T                 +     C+ CGLC++ACP +AI
Sbjct: 427 NTDSCTLCLSCVSTCPTQALTDGGDKPA---------LNFLEQDCVQCGLCEKACPENAI 477

Query: 119 VEGPNFEFATETRQ 132
                     + RQ
Sbjct: 478 SLTSQMNLDKQARQ 491



 Score = 38.9 bits (89), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 11/53 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C   CPA AI   +              +ID   C   G C  ACP  AI
Sbjct: 203 CNRCLNFCPADAIQSIN-----------KMIEIDPYLCHGAGSCTNACPTGAI 244



 Score = 35.5 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY--DIDMIKCIYCG 107
           + C+ C LCE  CP  AI++ S        R+T++     D  +CI CG
Sbjct: 460 QDCVQCGLCEKACPENAISLTSQMNLDKQARQTIKTLKQEDPFECIRCG 508


>gi|145519287|ref|XP_001445510.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124412965|emb|CAK78113.1| unnamed protein product [Paramecium tetraurelia]
          Length = 588

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 1/75 (1%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
             E  LR     ++RC   + C   C       +S   C + T+++    I+   CI C 
Sbjct: 1   MEESKLRIAIINKDRCKP-QRCALECKKNCPINKSEKLCIEVTKQSKTCTINESLCIGCA 59

Query: 108 LCQEACPVDAIVEGP 122
           +C + CP  AI+   
Sbjct: 60  ICVKKCPFKAIMIIN 74


>gi|77918446|ref|YP_356261.1| NADH dehydrogenase I subunit F [Pelobacter carbinolicus DSM 2380]
 gi|77544529|gb|ABA88091.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Pelobacter carbinolicus DSM 2380]
          Length = 617

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 15/97 (15%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
             LRY F+ +   +   ++            L  Y   E++C+ C +C   CP  AIT E
Sbjct: 533 TTLRY-FRNEYEAHINEKRCPAGVC----PELLTYAIVEDKCVGCGVCIKACPVGAITGE 587

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                         + ID  KC+ CG C   C  DAI
Sbjct: 588 KKAA----------HTIDASKCVKCGACVPKCKFDAI 614


>gi|88799939|ref|ZP_01115511.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Reinekea
           sp. MED297]
 gi|88777370|gb|EAR08573.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Reinekea
           sp. MED297]
          Length = 601

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 32/96 (33%), Gaps = 2/96 (2%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +  CI C LCE  CP   +  +           +      +  CI CG C   CP   I
Sbjct: 375 EDSPCIRCGLCEQACPVDLLPQQMHWASKHRELESAEL-HSLEDCIECGACAYVCP-SRI 432

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESEIVR 154
                F +A    ++     E       R+E+   R
Sbjct: 433 PLVQYFRYAKGELKQERQQHEESERARIRFENRQAR 468



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           A  ++S       T++ +   I+   CI CGLC++ACPVD +       +A++ R+
Sbjct: 353 APIMKSTNCLLAPTKKELPPAIEDSPCIRCGLCEQACPVDLLP--QQMHWASKHRE 406


>gi|150389463|ref|YP_001319512.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing
           protein [Alkaliphilus metalliredigens QYMF]
 gi|149949325|gb|ABR47853.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Alkaliphilus metalliredigens QYMF]
          Length = 1176

 Score = 49.7 bits (117), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 44/141 (31%), Gaps = 33/141 (23%)

Query: 28  FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH 87
           FK      +P   G+T+   RG   +       ++CI C  C  ICP   I         
Sbjct: 657 FKGMEDGTFP--MGTTAYEKRGIAIIVPQWQ-TDKCIQCNQCAYICPHSVIRPFLLDEEE 713

Query: 88  DGTR----------------RTVRYDIDMIKCIYCGLCQEAC--PVDAIVEGP------- 122
              +                   R  I    C  CG C + C  P  A+V          
Sbjct: 714 ISKKPETFETKDAIGKGLEGYQYRIQISPYDCTGCGNCADICPAPKKALVMVDAEQEMSK 773

Query: 123 ---NFEFATE--TRQELYYDK 138
              N+EF+ E  T ++    K
Sbjct: 774 QEENWEFSAEHLTYKDHLMTK 794


>gi|298481911|ref|ZP_07000100.1| hydrogenase large subunit HymC [Bacteroides sp. D22]
 gi|298271775|gb|EFI13347.1| hydrogenase large subunit HymC [Bacteroides sp. D22]
          Length = 588

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 5/89 (5%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVR 95
           PF  G  SPR R   A        ++CI C+ CE++C   Q +      R    T     
Sbjct: 131 PFNGGELSPRKREITA--SIVRNMDKCIFCRRCESVCNDVQTVGALGAIRRGFNTTIAPA 188

Query: 96  YDIDM--IKCIYCGLCQEACPVDAIVEGP 122
           +D  M   +C YCG C   CPV A+ E  
Sbjct: 189 FDRMMTESECTYCGQCVAVCPVGALTERD 217



 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 5/67 (7%)

Query: 52  ALRRYPNGEERCIACKLCEAICPA-----QAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
            L  +PN    C  C  CE    A     + +    G         T     +M KCI+C
Sbjct: 99  ILSDHPNDCLTCPKCGNCELQTLALRFNIREMPFNGGELSPRKREITASIVRNMDKCIFC 158

Query: 107 GLCQEAC 113
             C+  C
Sbjct: 159 RRCESVC 165


>gi|293371347|ref|ZP_06617784.1| putative ferredoxin hydrogenase [Bacteroides ovatus SD CMC 3f]
 gi|292633707|gb|EFF52262.1| putative ferredoxin hydrogenase [Bacteroides ovatus SD CMC 3f]
          Length = 588

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 5/89 (5%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVR 95
           PF  G  SPR R   A        ++CI C+ CE++C   Q +      R    T     
Sbjct: 131 PFNGGELSPRKREITA--SIVRNMDKCIFCRRCESVCNDVQTVGALGAIRRGFNTTIAPA 188

Query: 96  YDIDM--IKCIYCGLCQEACPVDAIVEGP 122
           +D  M   +C YCG C   CPV A+ E  
Sbjct: 189 FDRMMTESECTYCGQCVAVCPVGALTERD 217



 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 5/67 (7%)

Query: 52  ALRRYPNGEERCIACKLCEAICPA-----QAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
            L  +PN    C  C  CE    A     + +    G         T     +M KCI+C
Sbjct: 99  ILSDHPNDCLTCPKCGNCELQTLALRFNIREMPFNGGELSPRKREITASIVRNMDKCIFC 158

Query: 107 GLCQEAC 113
             C+  C
Sbjct: 159 RRCESVC 165


>gi|317131978|ref|YP_004091292.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Ethanoligenens harbinense YUAN-3]
 gi|315469957|gb|ADU26561.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Ethanoligenens harbinense YUAN-3]
          Length = 368

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 11/62 (17%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               E+C+ C  C   C   AIT+  G              ID  +C+ CG C  ACP D
Sbjct: 191 HVHTEKCVGCGTCRKQCAHDAITLTGGKAS-----------IDHNRCVGCGRCIGACPTD 239

Query: 117 AI 118
           A+
Sbjct: 240 AV 241


>gi|157363741|ref|YP_001470508.1| hypothetical protein Tlet_0878 [Thermotoga lettingae TMO]
 gi|157314345|gb|ABV33444.1| protein of unknown function DUF362 [Thermotoga lettingae TMO]
          Length = 346

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 38/96 (39%), Gaps = 17/96 (17%)

Query: 33  TINYP--FEKGSTSPRFRG--EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88
           TI  P   E        +      +R     ++RC+ C++CE  CPA+AI I        
Sbjct: 263 TIKLPVTAETLPVPGMLKNLARKIIRVPKISKKRCVQCRICEERCPAKAIDI-------- 314

Query: 89  GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
                  Y I   KCI C +C E CP  AI     F
Sbjct: 315 -----SNYFISYNKCIRCYVCHEVCPRGAIDLIRKF 345


>gi|256371616|ref|YP_003109440.1| formate dehydrogenase, alpha subunit [Acidimicrobium ferrooxidans
           DSM 10331]
 gi|256008200|gb|ACU53767.1| formate dehydrogenase, alpha subunit [Acidimicrobium ferrooxidans
           DSM 10331]
          Length = 985

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 5/84 (5%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID- 99
             T   +  + +   Y     +CI C  C   C  +    E+        R  V +D   
Sbjct: 125 PFTPKPYEVDASHPMYRYDPSQCILCGRCVQACQ-EVQVNETLSIDWSLERPRVVWDGGK 183

Query: 100 ---MIKCIYCGLCQEACPVDAIVE 120
                 C+ CG C   CP +A++E
Sbjct: 184 PAGESSCVSCGHCVSVCPCNALME 207



 Score = 37.4 bits (85), Expect = 0.64,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 9/65 (13%)

Query: 58  NGEERCIAC----KLCEAICPAQAITIESG-----PRCHDGTRRTVRYDIDMIKCIYCGL 108
           N E  C  C      C      + + +        P+ ++       Y  D  +CI CG 
Sbjct: 93  NHELYCTVCDNSNGDCVLHESVRDLGVNEELVPFTPKPYEVDASHPMYRYDPSQCILCGR 152

Query: 109 CQEAC 113
           C +AC
Sbjct: 153 CVQAC 157


>gi|238785614|ref|ZP_04629593.1| Electron transport complex protein rnfC [Yersinia bercovieri ATCC
           43970]
 gi|238713501|gb|EEQ05534.1| Electron transport complex protein rnfC [Yersinia bercovieri ATCC
           43970]
          Length = 556

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 3/103 (2%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C LC   CPA  +  +       G       + ++  CI CG C   CP   I  
Sbjct: 351 QSCIRCGLCVDACPAG-LLPQQLYWFSRGEEHEKARNHNLFDCIECGACAYVCP-SNIPL 408

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
              +       + L  +  R      R+E++  R +  +   R
Sbjct: 409 VQYYRQEKAEIRALDIESARAAEAKARFEAKQAR-LAREKLAR 450


>gi|225410187|ref|ZP_03761376.1| hypothetical protein CLOSTASPAR_05409 [Clostridium asparagiforme
           DSM 15981]
 gi|225042291|gb|EEG52537.1| hypothetical protein CLOSTASPAR_05409 [Clostridium asparagiforme
           DSM 15981]
          Length = 683

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 30/105 (28%), Gaps = 15/105 (14%)

Query: 29  KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88
           K  +    P  +                   E++CI C  C  +C      +        
Sbjct: 7   KRMSKHLSPEVRVPIERDNVSIFR------DEDKCIKCGQCRDMCRDYIGVLGHYSLEAT 60

Query: 89  GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
           G R           CI CG C   CPV +I E   +    E   +
Sbjct: 61  GDR---------AVCINCGQCANVCPVGSISEVKEYRQVAEAISD 96


>gi|218890264|ref|YP_002439128.1| electron transport complex protein RnfC [Pseudomonas aeruginosa
           LESB58]
 gi|218770487|emb|CAW26252.1| probable ferredoxin [Pseudomonas aeruginosa LESB58]
          Length = 774

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 10/97 (10%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            CI C  C  +CP   +  +       G         ++  CI CG C   CP  +I   
Sbjct: 368 PCIRCGDCAQVCPVS-LLPQQLHFFALGNEHEQLLAHNLFDCIECGACAYVCP-SSIPLV 425

Query: 122 PNFEFAT-ETRQELYYDKERLL---NNGDRWESEIVR 154
             +  +  E R++    +++LL    + +R+E    R
Sbjct: 426 QYYRASKAEIREQ----RQKLLKAEQSRERFEQRQAR 458


>gi|168179227|ref|ZP_02613891.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum
           NCTC 2916]
 gi|182669884|gb|EDT81860.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum
           NCTC 2916]
          Length = 411

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 7/110 (6%)

Query: 15  EFVGAFFLCLRY-FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
           + +      ++   F+    +     K            +      EE C+ C  C   C
Sbjct: 295 DMIEGLSYYMKEKGFEKLEDMVGLANKNIIPAEDLDRGYIVYPKFNEENCVGCGRCYISC 354

Query: 74  PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                    G +      +  +  ++   C+ C LC   CPV  I +G  
Sbjct: 355 YDG------GHQAIKWDGKNRKPILEKENCVGCHLCANVCPVQCISKGEI 398


>gi|167770142|ref|ZP_02442195.1| hypothetical protein ANACOL_01485 [Anaerotruncus colihominis DSM
           17241]
 gi|167667464|gb|EDS11594.1| hypothetical protein ANACOL_01485 [Anaerotruncus colihominis DSM
           17241]
          Length = 479

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDG------TRRTVRYDIDMIKCIYCGLCQ 110
              +E+C+ C  C   CP  AI   + P  +          R     ID  KCI CG C 
Sbjct: 126 HIDQEKCVECGRCATACPYSAIMKYTRPCENACKIKAISMHRDNSAKIDNDKCIACGACV 185

Query: 111 EACPVDAI 118
             CP  AI
Sbjct: 186 YQCPFGAI 193



 Score = 41.6 bits (96), Expect = 0.036,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 26/68 (38%), Gaps = 13/68 (19%)

Query: 54  RRYPNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
               +    C  C    CE  CP  AI++  G              ID  KC+ CG C  
Sbjct: 92  VNRYHVGSACRGCIAHRCEHACPTGAISVHDGKAH-----------IDQEKCVECGRCAT 140

Query: 112 ACPVDAIV 119
           ACP  AI+
Sbjct: 141 ACPYSAIM 148


>gi|148925645|ref|ZP_01809333.1| pyruvate-flavodoxin oxidoreductase [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|145845655|gb|EDK22746.1| pyruvate-flavodoxin oxidoreductase [Campylobacter jejuni subsp.
           jejuni CG8486]
          Length = 1151

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 43/133 (32%), Gaps = 30/133 (22%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA------------------QAIT 79
           FE G+T    RG   +         CI C  C ++CP                       
Sbjct: 668 FEHGTTEYEKRGVGVMVPRWIE-ANCIQCNQCASVCPHAVIRPFLINDEEMANAPRGVKD 726

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV--DAIVEGP--------NFEFATE 129
                +   G + + +  +  + C  C LC   CP    ++V  P          E A  
Sbjct: 727 HALEAKGTKGEKLSFKIQVSPLDCTGCELCVHECPTKEKSLVMVPLQEEMDFGEQENADY 786

Query: 130 TRQELYYDKERLL 142
             +E+ Y K+ +L
Sbjct: 787 LFKEITY-KDDIL 798


>gi|57641548|ref|YP_184026.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit F
           [Thermococcus kodakarensis KOD1]
 gi|57159872|dbj|BAD85802.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit F
           [Thermococcus kodakarensis KOD1]
          Length = 600

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 10/66 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L RY    ++C  C  C   CPA AI+ E          R   + ID   CI CG C E 
Sbjct: 537 LIRYVIITDKCTGCTACAIFCPANAISGE----------RLKPHFIDQEACIKCGTCYEV 586

Query: 113 CPVDAI 118
           C  +AI
Sbjct: 587 CRFNAI 592



 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 16/39 (41%)

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +G       +  +RY I   KC  C  C   CP +AI
Sbjct: 524 HINGRCPAKVCKPLIRYVIITDKCTGCTACAIFCPANAI 562


>gi|66356990|ref|XP_625673.1| pyruvate:ferredoxin oxidoreductase/NADPH-cytochrome P450 reductase
           PNO [Cryptosporidium parvum Iowa II]
 gi|46226683|gb|EAK87662.1| pyruvate:ferredoxin oxidoreductase/NADPH-cytochrome P450 reductase
           PNO [Cryptosporidium parvum Iowa II]
          Length = 1934

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 36/111 (32%), Gaps = 22/111 (19%)

Query: 27  FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA--------- 77
            F    T+      G+T+   RG  A+        +C  C  C  +CP  A         
Sbjct: 688 MFDPTGTVPL----GTTAYEKRG-IAMSIPIVDMNKCTQCNYCSIVCPHAAIRPFLLDEA 742

Query: 78  --------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
                   + I       + +    R  +  + C  C LC  ACP DA+  
Sbjct: 743 EFKNAPETMHIPKAKGGQEFSSYYYRIQVTPLDCTGCELCVHACPDDALHM 793


>gi|329568381|gb|EGG50190.1| pyruvate synthase [Enterococcus faecalis TX1467]
          Length = 1229

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96
            AL       +RC  C  C  +CP  AI                              R 
Sbjct: 681 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 740

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125
            + +  C  CGLC EACP    A+V  P  E
Sbjct: 741 QVSVKDCTGCGLCVEACPAKGKALVMKPYDE 771


>gi|320354646|ref|YP_004195985.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfobulbus
           propionicus DSM 2032]
 gi|320123148|gb|ADW18694.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfobulbus
           propionicus DSM 2032]
          Length = 1191

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 34/128 (26%), Gaps = 32/128 (25%)

Query: 14  KEFVGAFFLCLRYF---------FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64
            EFV    +  +            +      +P    +TS   +   A++      E CI
Sbjct: 640 PEFVK--TVTAKMMEGHGEDIPVSQFPNDGRWP---TATSQWEKRNIAVQVSCWDAETCI 694

Query: 65  ACKLCEAICPAQAITI------------------ESGPRCHDGTRRTVRYDIDMIKCIYC 106
            C  C  +CP   I +                   +     +         I    C  C
Sbjct: 695 QCGRCSLVCPHGCIRMKVATPEALAAAGADASFKTADAVGKEFKDMKFTMQISTADCCGC 754

Query: 107 GLCQEACP 114
            LC   CP
Sbjct: 755 TLCVTVCP 762



 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 8/20 (40%), Positives = 8/20 (40%)

Query: 101 IKCIYCGLCQEACPVDAIVE 120
             CI CG C   CP   I  
Sbjct: 691 ETCIQCGRCSLVCPHGCIRM 710


>gi|307270215|ref|ZP_07551528.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX4248]
 gi|306513431|gb|EFM82050.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX4248]
          Length = 1243

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96
            AL       +RC  C  C  +CP  AI                              R 
Sbjct: 695 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 754

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125
            + +  C  CGLC EACP    A+V  P  E
Sbjct: 755 QVSVKDCTGCGLCVEACPAKGKALVMKPYDE 785


>gi|307287351|ref|ZP_07567412.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX0109]
 gi|306501592|gb|EFM70887.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX0109]
 gi|315164702|gb|EFU08719.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis TX1302]
          Length = 1243

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96
            AL       +RC  C  C  +CP  AI                              R 
Sbjct: 695 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 754

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125
            + +  C  CGLC EACP    A+V  P  E
Sbjct: 755 QVSVKDCTGCGLCVEACPAKGKALVMKPYDE 785


>gi|294780373|ref|ZP_06745742.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis PC1.1]
 gi|294452637|gb|EFG21070.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus
           faecalis PC1.1]
          Length = 1229

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96
            AL       +RC  C  C  +CP  AI                              R 
Sbjct: 681 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 740

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125
            + +  C  CGLC EACP    A+V  P  E
Sbjct: 741 QVSVKDCTGCGLCVEACPAKGKALVMKPYDE 771


>gi|289676762|ref|ZP_06497652.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas
           syringae pv. syringae FF5]
          Length = 291

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 28/75 (37%), Gaps = 10/75 (13%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           RG    +     E  CI C  C   CP  AI   S           + + + + +C  C 
Sbjct: 76  RGTAPAQVAFIREAECIGCTKCIQACPVDAILGAS----------RLMHTVIIDECTGCD 125

Query: 108 LCQEACPVDAIVEGP 122
           LC   CPVD I   P
Sbjct: 126 LCVAPCPVDCIEMHP 140


>gi|297526981|ref|YP_003669005.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Staphylothermus hellenicus DSM 12710]
 gi|297255897|gb|ADI32106.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Staphylothermus hellenicus DSM 12710]
          Length = 96

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 11/65 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              +C+ C LC   CP  AI  +                I+   C  CG+C   CPV+AI
Sbjct: 40  DLNKCVKCMLCWIFCPDMAIVWDGEKIV-----------INYDYCKGCGICAHECPVNAI 88

Query: 119 VEGPN 123
              P 
Sbjct: 89  TMVPE 93


>gi|260773218|ref|ZP_05882134.1| electron transport complex protein RnfC [Vibrio metschnikovii CIP
           69.14]
 gi|260612357|gb|EEX37560.1| electron transport complex protein RnfC [Vibrio metschnikovii CIP
           69.14]
          Length = 734

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 38/106 (35%), Gaps = 13/106 (12%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C LC   CPA  +  +               ++++  CI CG C   CP   I    
Sbjct: 378 CIRCGLCADACPAS-LLPQQLQWHAKAEEYDKCEELNLKDCIECGACAYVCP-SEIPLVQ 435

Query: 123 NF-----EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            +     E  T  R+    ++ +      R+E +  R +  D   R
Sbjct: 436 YYRQAKAEIRTRKREAEAAERAK-----QRFEEKKAR-MERDKAER 475


>gi|257079471|ref|ZP_05573832.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis
           JH1]
 gi|256987501|gb|EEU74803.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis
           JH1]
          Length = 1223

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96
            AL       +RC  C  C  +CP  AI                              R 
Sbjct: 675 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 734

Query: 97  DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125
            + +  C  CGLC EACP    A+V  P  E
Sbjct: 735 QVSVKDCTGCGLCVEACPAKGKALVMKPYDE 765


>gi|240143434|ref|ZP_04742035.1| iron-sulfur cluster-binding protein [Roseburia intestinalis L1-82]
 gi|257204625|gb|EEV02910.1| iron-sulfur cluster-binding protein [Roseburia intestinalis L1-82]
 gi|291534388|emb|CBL07500.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta
           subunits [Roseburia intestinalis M50/1]
          Length = 288

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 22/97 (22%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ++CI C +CE  C   AI  E                I+  +C YCG C ++CP DA   
Sbjct: 164 DKCIGCGVCEKACRQGAIKCEGNKV-----------TINRDQCNYCGRCVKSCPTDAWEG 212

Query: 121 GPNFEFAT--------ETRQEL---YYDKERLLNNGD 146
              +  +            ++L    +DKE L    D
Sbjct: 213 NSGYLVSFGGLFGNQIYKGEQLLPIVHDKETLFRVTD 249


>gi|225016098|ref|ZP_03705331.1| hypothetical protein CLOSTMETH_00042 [Clostridium methylpentosum
           DSM 5476]
 gi|224951095|gb|EEG32304.1| hypothetical protein CLOSTMETH_00042 [Clostridium methylpentosum
           DSM 5476]
          Length = 490

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 25/70 (35%), Gaps = 6/70 (8%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDG------TRRTVRYDIDMIKCIYCGL 108
                +++C  C  C A CP  AI     P  +                ID  KCI CG 
Sbjct: 130 HAVIDKKKCRECGKCVAACPYNAIVDIERPCKNSCAVGAISMDENDVATIDPNKCINCGS 189

Query: 109 CQEACPVDAI 118
           C   CP  AI
Sbjct: 190 CVTGCPFGAI 199



 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 13/60 (21%)

Query: 61  ERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C  C  K C   CP  AI+   G              ID  KC  CG C  ACP +AI
Sbjct: 105 QNCRGCLAKKCIKACPFGAISTSDG-----------HAVIDKKKCRECGKCVAACPYNAI 153


>gi|15802042|ref|NP_288064.1| electron transport complex protein RnfB [Escherichia coli O157:H7
           EDL933]
 gi|12515617|gb|AAG56617.1|AE005386_8 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
          Length = 192

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   +             + +    C  C LC + CP   I
Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTHCI 162

Query: 119 VEGPNFEFATETRQEL 134
              P  E     + +L
Sbjct: 163 SLQPVAETPDSWKWDL 178



 Score = 35.5 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C  C +ACPVDAI
Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132


>gi|332975511|gb|EGK12401.1| formate dehydrogenase [Desmospora sp. 8437]
          Length = 991

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 9/87 (10%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRT 93
           FE     P     ++   Y    ++CI C  C   C      + +TI+            
Sbjct: 127 FEPKPDPPD----NSHPFYRYEPDQCILCGRCVEACQNLQVNETLTIDWNRDRPRVVWDH 182

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVE 120
               ID   C+ CG C   CP +A++E
Sbjct: 183 DVP-IDRSSCVSCGHCVTVCPCNALME 208



 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 26/83 (31%), Gaps = 9/83 (10%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIAC----KLCEAICPA-----QAITIESGPRCHDGT 90
           +G      R E   R   N E  C  C      CE    A          +  P+     
Sbjct: 76  RGERVEAARYEAMSRVLHNHELYCTVCDNNNGNCEVHNTAQQLRLNHQEYDFEPKPDPPD 135

Query: 91  RRTVRYDIDMIKCIYCGLCQEAC 113
                Y  +  +CI CG C EAC
Sbjct: 136 NSHPFYRYEPDQCILCGRCVEAC 158


>gi|332981828|ref|YP_004463269.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Mahella australiensis 50-1 BON]
 gi|332699506|gb|AEE96447.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Mahella australiensis 50-1 BON]
          Length = 597

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 35/96 (36%), Gaps = 15/96 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            L+Y F+ +   +   +K            L  Y    E C  C LC  +CP  AIT   
Sbjct: 514 TLKY-FRDEYEAHIRDKKCPAGVC----QQLLEYVVMPELCRGCGLCARMCPVGAITGAK 568

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                        Y ID  KC  CG C + C  DA+
Sbjct: 569 KEP----------YVIDPEKCTKCGTCMDVCKFDAV 594



 Score = 40.1 bits (92), Expect = 0.099,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 8/62 (12%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
            I          ++ + Y +    C  CGLC   CPV AI            ++    D 
Sbjct: 525 HIRDKKCPAGVCQQLLEYVVMPELCRGCGLCARMCPVGAI--------TGAKKEPYVIDP 576

Query: 139 ER 140
           E+
Sbjct: 577 EK 578


>gi|329723396|gb|EGG59925.1| formate dehydrogenase, alpha subunit [Staphylococcus aureus subsp.
           aureus 21172]
          Length = 984

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 13/96 (13%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P+EK               Y     +CI C  C   C    +             R +  
Sbjct: 131 PYEKDYGP----------FYRYDPNQCILCGRCVEACQDIEVNETIRIDWDREHPRVIWD 180

Query: 97  D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           +   I+   C+ CG C   CP +A++E      A  
Sbjct: 181 NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGY 216



 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 17/68 (25%), Gaps = 8/68 (11%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105
           R        C  C      CE      A                      Y  D  +CI 
Sbjct: 90  RILEKHMLYCTVCDYNNGDCEIHNTMDAWGLQHQTYEYKEKPYEKDYGPFYRYDPNQCIL 149

Query: 106 CGLCQEAC 113
           CG C EAC
Sbjct: 150 CGRCVEAC 157


>gi|269203939|ref|YP_003283208.1| formate dehydrogenase, alpha subunit, putative [Staphylococcus
           aureus subsp. aureus ED98]
 gi|262076229|gb|ACY12202.1| formate dehydrogenase, alpha subunit, putative [Staphylococcus
           aureus subsp. aureus ED98]
          Length = 984

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 13/96 (13%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P+EK               Y     +CI C  C   C    +             R +  
Sbjct: 131 PYEKDYGP----------FYRYDPNQCILCGRCVEACQDIEVNETIRIDWDREHPRVIWD 180

Query: 97  D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           +   I+   C+ CG C   CP +A++E      A  
Sbjct: 181 NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGY 216



 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 17/68 (25%), Gaps = 8/68 (11%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105
           R        C  C      CE      A                      Y  D  +CI 
Sbjct: 90  RILEKHMLYCTVCDYNNGDCEIHNTMDAWGLQHQTYEYKEKPYEKDYGPFYRYDPNQCIL 149

Query: 106 CGLCQEAC 113
           CG C EAC
Sbjct: 150 CGRCVEAC 157


>gi|251780311|ref|ZP_04823231.1| iron-dependent hydrogenase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243084626|gb|EES50516.1| iron-dependent hydrogenase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 494

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGT------RRTVRYDIDMIKCIYCGLCQ 110
               ++C  C +C+  CP  AI  +  P                R  I   KC+ CG C 
Sbjct: 135 YIDPDKCKECGMCKKACPYDAIAEDMRPCKRSCPTGALDINSDKRAMIKQEKCVNCGACM 194

Query: 111 EACPVDAI 118
            ACP  A+
Sbjct: 195 AACPFGAL 202



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 13/60 (21%)

Query: 63  CIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           C  C    C+++C   AIT   G              ID  KC  CG+C++ACP DAI E
Sbjct: 110 CRNCIAHKCQSVCNFGAITYVDGKAY-----------IDPDKCKECGMCKKACPYDAIAE 158


>gi|257792752|ref|YP_003183358.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|257476649|gb|ACV56969.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
          Length = 393

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 6/73 (8%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                   C +C++C   CP  AI          G            +C+ CG C++ CP
Sbjct: 286 CVVIDGRACSSCRMCATFCPTGAIRKFDNDDGTLGVYHY------PGECVKCGSCRDVCP 339

Query: 115 VDAIVEGPNFEFA 127
            +AI        A
Sbjct: 340 ENAIELLDEVRPA 352



 Score = 40.9 bits (94), Expect = 0.057,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 11/55 (20%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           +AC  C   C +  I +  G              +D  KCI CG C   CP  A+
Sbjct: 42  VACLKCADACTSGCIALVDGE-----------LRVDAAKCIGCGTCATVCPTSAL 85


>gi|218548776|ref|YP_002382567.1| electron transport complex protein RnfB [Escherichia fergusonii
           ATCC 35469]
 gi|226735420|sp|B7LQP2|RNFB_ESCF3 RecName: Full=Electron transport complex protein rnfB
 gi|218356317|emb|CAQ88935.1| putative iron-sulfur protein [Escherichia fergusonii ATCC 35469]
 gi|324113402|gb|EGC07377.1| electron transporter [Escherichia fergusonii B253]
          Length = 192

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   +             + +    C  C LC + CP   I
Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTQCI 162

Query: 119 VEGPNFEFATETRQEL 134
              P  E     + +L
Sbjct: 163 SLQPVAETPDSWKWDL 178



 Score = 35.5 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C  C +ACPVDAI
Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132


>gi|123442264|ref|YP_001006245.1| electron transport complex protein RnfC [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|166225386|sp|A1JM81|RNFC_YERE8 RecName: Full=Electron transport complex protein rnfC
 gi|122089225|emb|CAL12071.1| putative iron-sulfur binding NADH dehydrogenase [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 697

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 3/103 (2%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C LC   CPA  +  +       G       + ++  CI CG C   CP   I  
Sbjct: 375 QSCIRCGLCVDACPAG-LLPQQLYWFSRGEEHEKARNHNLFDCIECGACAYVCP-SNIPL 432

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
              +       + L  + ER      R+E++  R +  +   R
Sbjct: 433 VQYYRQEKAEIRTLDQEAERAAQAKARFEAKQAR-LEREKIAR 474


>gi|77164681|ref|YP_343206.1| electron transport complex protein RnfC [Nitrosococcus oceani ATCC
           19707]
 gi|76882995|gb|ABA57676.1| Electron transport complex, RnfABCDGE type, C subunit
           [Nitrosococcus oceani ATCC 19707]
          Length = 515

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 30/104 (28%), Gaps = 4/104 (3%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            CI C  C   CP   +  +               D  +  CI CG C   CP   I   
Sbjct: 368 PCIRCGACVEACPVG-LLPQQLYWHARAKELDKTQDYHLFDCIECGCCAYVCPSH-IPLV 425

Query: 122 PNFEFATETR--QELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
             + +A      QE   +K  L      +  + +         R
Sbjct: 426 QYYRYAKSEIWTQEQEREKADLARQRHEFRQQRLAREQQQKAAR 469


>gi|57652241|ref|YP_187108.1| formate dehydrogenase, alpha subunit, putative [Staphylococcus
           aureus subsp. aureus COL]
 gi|87161471|ref|YP_494893.1| formate dehydrogenase, alpha subunit [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88196225|ref|YP_501044.1| formate dehydrogenase subunit alpha [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|151222422|ref|YP_001333244.1| formate dehydrogenase-like protein [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|161510504|ref|YP_001576163.1| formate dehydrogenase alpha subunit [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221140238|ref|ZP_03564731.1| formate dehydrogenase alpha subunit [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|262048568|ref|ZP_06021452.1| hypothetical protein SAD30_0107 [Staphylococcus aureus D30]
 gi|262052311|ref|ZP_06024515.1| hypothetical protein SA930_0966 [Staphylococcus aureus 930918-3]
 gi|282922180|ref|ZP_06329876.1| formate dehydrogenase [Staphylococcus aureus A9765]
 gi|284025332|ref|ZP_06379730.1| formate dehydrogenase, alpha subunit [Staphylococcus aureus subsp.
           aureus 132]
 gi|294848847|ref|ZP_06789592.1| formate dehydrogenase [Staphylococcus aureus A9754]
 gi|81693906|sp|Q5HDP9|FDHL_STAAC RecName: Full=Putative formate dehydrogenase SACOL2301
 gi|123406992|sp|Q2FVV9|FDHL_STAA8 RecName: Full=Putative formate dehydrogenase SAOUHSC_02582
 gi|123722356|sp|Q2FEI5|FDHL_STAA3 RecName: Full=Putative formate dehydrogenase SAUSA300_2258
 gi|57286427|gb|AAW38521.1| formate dehydrogenase, alpha subunit, putative [Staphylococcus
           aureus subsp. aureus COL]
 gi|87127445|gb|ABD21959.1| formate dehydrogenase, alpha subunit [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87203783|gb|ABD31593.1| formate dehydrogenase, alpha subunit, putative [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|150375222|dbj|BAF68482.1| formate dehydrogenase homolog [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|160369313|gb|ABX30284.1| formate dehydrogenase alpha subunit [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|259159830|gb|EEW44870.1| hypothetical protein SA930_0966 [Staphylococcus aureus 930918-3]
 gi|259163426|gb|EEW47984.1| hypothetical protein SAD30_0107 [Staphylococcus aureus D30]
 gi|269941895|emb|CBI50305.1| putative bifunctional protein [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282593648|gb|EFB98641.1| formate dehydrogenase [Staphylococcus aureus A9765]
 gi|294824226|gb|EFG40650.1| formate dehydrogenase [Staphylococcus aureus A9754]
 gi|302752180|gb|ADL66357.1| molybdopterin oxidoreductase [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|315198154|gb|EFU28485.1| formate dehydrogenase alpha subunit [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|329314992|gb|AEB89405.1| Putative formate dehydrogenase [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329732023|gb|EGG68378.1| formate dehydrogenase, alpha subunit [Staphylococcus aureus subsp.
           aureus 21189]
          Length = 984

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 13/96 (13%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P+EK               Y     +CI C  C   C    +             R +  
Sbjct: 131 PYEKDYGP----------FYRYDPNQCILCGRCVEACQDIEVNETIRIDWDREHPRVIWD 180

Query: 97  D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           +   I+   C+ CG C   CP +A++E      A  
Sbjct: 181 NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGY 216



 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 17/68 (25%), Gaps = 8/68 (11%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105
           R        C  C      CE      A                      Y  D  +CI 
Sbjct: 90  RILEKHMLYCTVCDYNNGDCEIHNTMDAWGLQHQTYEYKEKPYEKDYGPFYRYDPNQCIL 149

Query: 106 CGLCQEAC 113
           CG C EAC
Sbjct: 150 CGRCVEAC 157


>gi|15925299|ref|NP_372833.1| formate dehydrogenase-like protein [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|81774830|sp|Q931G2|FDHL_STAAM RecName: Full=Putative formate dehydrogenase SAV2309
 gi|14248083|dbj|BAB58471.1| formate dehydrogenase homolog [Staphylococcus aureus subsp. aureus
           Mu50]
          Length = 984

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 13/96 (13%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P+EK               Y     +CI C  C   C    +             R +  
Sbjct: 131 PYEKDYGP----------FYRYDPNQCILCGRCVEACQDIEVNETIRIDWDREHPRVIWD 180

Query: 97  D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           +   I+   C+ CG C   CP +A++E      A  
Sbjct: 181 NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGY 216



 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 17/68 (25%), Gaps = 8/68 (11%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105
           R        C  C      CE      A                      Y  D  +CI 
Sbjct: 90  RILEKHMLYCTVCDYNNGDCEIHNTMDAWGLQHQTYEYKEKPYEKDYGPFYRYDPNQCIL 149

Query: 106 CGLCQEAC 113
           CG C EAC
Sbjct: 150 CGRCVEAC 157


>gi|15927889|ref|NP_375422.1| hypothetical protein SA2102 [Staphylococcus aureus subsp. aureus
           N315]
 gi|21283958|ref|NP_647046.1| hypothetical protein MW2229 [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49487092|ref|YP_044313.1| putative bifunctional protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|148268746|ref|YP_001247689.1| formate dehydrogenase, alpha subunit [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150394813|ref|YP_001317488.1| formate dehydrogenase, alpha subunit [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156980624|ref|YP_001442883.1| formate dehydrogenase-like protein [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|255007086|ref|ZP_05145687.2| formate dehydrogenase-like protein [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257794652|ref|ZP_05643631.1| formate dehydrogenase [Staphylococcus aureus A9781]
 gi|258408744|ref|ZP_05681028.1| formate dehydrogenase [Staphylococcus aureus A9763]
 gi|258422342|ref|ZP_05685254.1| formate dehydrogenase [Staphylococcus aureus A9719]
 gi|258439732|ref|ZP_05690478.1| formate dehydrogenase [Staphylococcus aureus A9299]
 gi|258442712|ref|ZP_05691272.1| formate dehydrogenase [Staphylococcus aureus A8115]
 gi|258446589|ref|ZP_05694744.1| formate dehydrogenase [Staphylococcus aureus A6300]
 gi|258450293|ref|ZP_05698385.1| formate dehydrogenase [Staphylococcus aureus A6224]
 gi|258455334|ref|ZP_05703294.1| formate dehydrogenase [Staphylococcus aureus A5937]
 gi|282893750|ref|ZP_06301982.1| formate dehydrogenase [Staphylococcus aureus A8117]
 gi|295404990|ref|ZP_06814803.1| formate dehydrogenase [Staphylococcus aureus A8819]
 gi|296275008|ref|ZP_06857515.1| formate dehydrogenase-like protein [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297244048|ref|ZP_06927938.1| formate dehydrogenase [Staphylococcus aureus A8796]
 gi|81648779|sp|Q6G711|FDHL_STAAS RecName: Full=Putative formate dehydrogenase SAS2201
 gi|81704199|sp|Q7A057|FDHL_STAAW RecName: Full=Putative formate dehydrogenase MW2229
 gi|81781059|sp|Q99RW4|FDHL_STAAN RecName: Full=Putative formate dehydrogenase SA2102
 gi|13702109|dbj|BAB43401.1| SA2102 [Staphylococcus aureus subsp. aureus N315]
 gi|21205400|dbj|BAB96094.1| MW2229 [Staphylococcus aureus subsp. aureus MW2]
 gi|49245535|emb|CAG44012.1| putative bifunctional protein [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|147741815|gb|ABQ50113.1| formate dehydrogenase, alpha subunit [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149947265|gb|ABR53201.1| formate dehydrogenase, alpha subunit [Staphylococcus aureus subsp.
           aureus JH1]
 gi|156722759|dbj|BAF79176.1| formate dehydrogenase homolog [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|257788624|gb|EEV26964.1| formate dehydrogenase [Staphylococcus aureus A9781]
 gi|257840427|gb|EEV64887.1| formate dehydrogenase [Staphylococcus aureus A9763]
 gi|257841773|gb|EEV66210.1| formate dehydrogenase [Staphylococcus aureus A9719]
 gi|257847508|gb|EEV71510.1| formate dehydrogenase [Staphylococcus aureus A9299]
 gi|257851833|gb|EEV75767.1| formate dehydrogenase [Staphylococcus aureus A8115]
 gi|257854657|gb|EEV77605.1| formate dehydrogenase [Staphylococcus aureus A6300]
 gi|257856385|gb|EEV79294.1| formate dehydrogenase [Staphylococcus aureus A6224]
 gi|257862545|gb|EEV85313.1| formate dehydrogenase [Staphylococcus aureus A5937]
 gi|282763808|gb|EFC03936.1| formate dehydrogenase [Staphylococcus aureus A8117]
 gi|294969935|gb|EFG45953.1| formate dehydrogenase [Staphylococcus aureus A8819]
 gi|297178826|gb|EFH38071.1| formate dehydrogenase [Staphylococcus aureus A8796]
 gi|312830655|emb|CBX35497.1| formate dehydrogenase, alpha subunit [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315129605|gb|EFT85596.1| hypothetical protein CGSSa03_08850 [Staphylococcus aureus subsp.
           aureus CGS03]
          Length = 984

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 13/96 (13%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P+EK               Y     +CI C  C   C    +             R +  
Sbjct: 131 PYEKDYGP----------FYRYDPNQCILCGRCVEACQDIEVNETIRIDWDREHPRVIWD 180

Query: 97  D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           +   I+   C+ CG C   CP +A++E      A  
Sbjct: 181 NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGY 216



 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 17/68 (25%), Gaps = 8/68 (11%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105
           R        C  C      CE      A                      Y  D  +CI 
Sbjct: 90  RILEKHMLYCTVCDYNNGDCEIHNTMDAWGLQHQTYEYKEKPYEKDYGPFYRYDPNQCIL 149

Query: 106 CGLCQEAC 113
           CG C EAC
Sbjct: 150 CGRCVEAC 157


>gi|283853706|ref|ZP_06370936.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. FW1012B]
 gi|283570916|gb|EFC18946.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. FW1012B]
          Length = 378

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 11/82 (13%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           + +    R+    ++CI C  C A+CP  A T+                 ID   CI CG
Sbjct: 189 KQDQHCVRFAVDAKKCIGCGECVAVCPVGAATMADRKAA-----------IDKSSCIGCG 237

Query: 108 LCQEACPVDAIVEGPNFEFATE 129
            C   CP  A+    + E    
Sbjct: 238 ECLTVCPKKAMSIDWHTEIVPF 259



 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 19/43 (44%)

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           +   PR     +  VR+ +D  KCI CG C   CPV A     
Sbjct: 181 MGCAPRAGKQDQHCVRFAVDAKKCIGCGECVAVCPVGAATMAD 223


>gi|254519684|ref|ZP_05131740.1| nitroreductase fused to ferredoxin domain-containing protein
           [Clostridium sp. 7_2_43FAA]
 gi|226913433|gb|EEH98634.1| nitroreductase fused to ferredoxin domain-containing protein
           [Clostridium sp. 7_2_43FAA]
          Length = 273

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 16/108 (14%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                +E+CI C LC   C  + I +  G             +I+ I C  CG C   CP
Sbjct: 1   MMKVDKEKCIGCSLCINDCIVRDINLVDGKA-----------NINNITCFKCGHCIAVCP 49

Query: 115 VDAIVEGPNFEF---ATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
            +A+     +         ++    D++ LL N  ++   I      D
Sbjct: 50  KNAVS-TDEYNMDDVKDYNKEAFEIDEDNLL-NFIKYRRSIRNFKNKD 95


>gi|254428110|ref|ZP_05041817.1| electron transport complex, RnfABCDGE type, C subunit subfamily,
           putative [Alcanivorax sp. DG881]
 gi|196194279|gb|EDX89238.1| electron transport complex, RnfABCDGE type, C subunit subfamily,
           putative [Alcanivorax sp. DG881]
          Length = 986

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 12/97 (12%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C  C  +CPA  +  +      +      ++  +++ CI CG C   CP   I    
Sbjct: 394 CIRCGSCAEVCPANLLPQQLYWHAKNDDLEKAQH-HNLMDCIECGACAYVCPSH-IPLVQ 451

Query: 123 NFEFA-TETRQEL----YYDKERLLNNGDRWESEIVR 154
            + +A  E RQ+       DK R      R+E+   R
Sbjct: 452 YYRYAKGEVRQQAADQVKADKAR-----QRFEARQAR 483


>gi|188587767|ref|YP_001919801.1| iron-dependent hydrogenase [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188498048|gb|ACD51184.1| iron-dependent hydrogenase [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 494

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGT------RRTVRYDIDMIKCIYCGLCQ 110
               ++C  C +C+  CP  AI  +  P                R  I   KC+ CG C 
Sbjct: 135 YIDPDKCKECGMCKKACPYDAIAEDMRPCKRSCPTGALDINSDKRAMIKQEKCVNCGACM 194

Query: 111 EACPVDAI 118
            ACP  A+
Sbjct: 195 AACPFGAL 202



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 13/60 (21%)

Query: 63  CIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           C  C    C+++C   AIT   G              ID  KC  CG+C++ACP DAI E
Sbjct: 110 CRNCIAHKCQSVCNFGAITYVDGKAY-----------IDPDKCKECGMCKKACPYDAIAE 158


>gi|257076625|ref|ZP_05570986.1| indolepyruvate oxidoreductase, alpha subunit [Ferroplasma
           acidarmanus fer1]
          Length = 629

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 13/73 (17%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R    +  Y   +++C  C  C       A+ IE G              I+   C  CG
Sbjct: 564 RKNGEIEIYTVNQDKCGKCMNCVENFSCPALFIEKGE-----------IQINPSICDGCG 612

Query: 108 LCQE--ACPVDAI 118
           +C E   CP +AI
Sbjct: 613 VCAEPLVCPFNAI 625


>gi|26247875|ref|NP_753915.1| electron transport complex protein RnfB [Escherichia coli CFT073]
 gi|227885956|ref|ZP_04003761.1| NADH dehydrogenase (ubiquinone) [Escherichia coli 83972]
 gi|300988845|ref|ZP_07178840.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 45-1]
 gi|301050124|ref|ZP_07197028.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 185-1]
 gi|81748476|sp|Q8FH96|RNFB_ECOL6 RecName: Full=Electron transport complex protein rnfB
 gi|26108278|gb|AAN80480.1|AE016761_55 Electron transport complex protein rnfB [Escherichia coli CFT073]
 gi|227837048|gb|EEJ47514.1| NADH dehydrogenase (ubiquinone) [Escherichia coli 83972]
 gi|300298146|gb|EFJ54531.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 185-1]
 gi|300407383|gb|EFJ90921.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 45-1]
 gi|307553651|gb|ADN46426.1| electron transport complex protein RnfB [Escherichia coli ABU
           83972]
 gi|315291968|gb|EFU51320.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 153-1]
          Length = 192

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   +             + +    C  C LC + CP   I
Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTHCI 162

Query: 119 VEGPNFEFATETRQEL 134
              P  E     + +L
Sbjct: 163 SLQPVAETPDSWKWDL 178



 Score = 35.5 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C  C +ACPVDAI
Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132


>gi|56476887|ref|YP_158476.1| electron transport complex protein rnfC (nitrogen fixation protein
           rnfC) [Aromatoleum aromaticum EbN1]
 gi|56312930|emb|CAI07575.1| Electron transport complex protein rnfC (Nitrogen fixation protein
           rnfC) [Aromatoleum aromaticum EbN1]
          Length = 508

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/148 (22%), Positives = 43/148 (29%), Gaps = 14/148 (9%)

Query: 27  FFKAKTT-INYPFEKGSTSPRFRGEHALRRYPNG---EERCIACKLCEAICPAQAITIES 82
                 T +  P  +        G   L     G      CI C  C   CP   + +E 
Sbjct: 338 LLGGPMTGMQVPSLRVPVIKGTGGILVLDGDEVGLRAPGPCIRCSTCVRACPVGLLPLEI 397

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF-----EFATETRQELYYD 137
             R   G          +  CI CG C   CP   I     F     E A   R +L  +
Sbjct: 398 ARRIGAGDLDAAV-KFGLKDCIACGCCAYDCPSH-IPLVQYFHHAKGELAARDRHKLRSE 455

Query: 138 KERLL--NNGDRWESEIVRNIVTDSPYR 163
             + L     +R E E  R     +  R
Sbjct: 456 ATKTLAQARAERLERE-TREKAETAARR 482


>gi|51246476|ref|YP_066360.1| glutamate synthase, beta subunit [Desulfotalea psychrophila LSv54]
 gi|50877513|emb|CAG37353.1| related to glutamate synthase, beta subunit [Desulfotalea
           psychrophila LSv54]
          Length = 775

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 26/60 (43%), Gaps = 6/60 (10%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C  C LCE ICP  AI+ E             RY  +  KCI CG C + CP    V  P
Sbjct: 721 CRDCHLCETICPEGAISREDLGNGEY------RYVSNDDKCIACGFCADTCPCGIWVMNP 774


>gi|86149395|ref|ZP_01067626.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|86152976|ref|ZP_01071181.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Campylobacter
           jejuni subsp. jejuni HB93-13]
 gi|88596081|ref|ZP_01099318.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|205356093|ref|ZP_03222860.1| pyruvate flavodoxin oxidoreductase [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|218563077|ref|YP_002344856.1| pyruvate-flavodoxin oxidoreductase [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|315124909|ref|YP_004066913.1| pyruvate-flavodoxin oxidoreductase [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|85840177|gb|EAQ57435.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|85843861|gb|EAQ61071.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Campylobacter
           jejuni subsp. jejuni HB93-13]
 gi|88190922|gb|EAQ94894.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|112360783|emb|CAL35583.1| pyruvate-flavodoxin oxidoreductase [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|205345936|gb|EDZ32572.1| pyruvate flavodoxin oxidoreductase [Campylobacter jejuni subsp.
           jejuni CG8421]
 gi|284926683|gb|ADC29035.1| pyruvate:ferredoxin oxidoreductase [Campylobacter jejuni subsp.
           jejuni IA3902]
 gi|315018631|gb|ADT66724.1| pyruvate-flavodoxin oxidoreductase [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|315927424|gb|EFV06762.1| Pyruvate/ferredoxin oxidoreductase [Campylobacter jejuni subsp.
           jejuni DFVF1099]
 gi|315930744|gb|EFV09753.1| pyruvate synthase [Campylobacter jejuni subsp. jejuni 305]
          Length = 1186

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 43/133 (32%), Gaps = 30/133 (22%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA------------------QAIT 79
           FE G+T    RG   +         CI C  C ++CP                       
Sbjct: 668 FEHGTTEYEKRGVGVMVPRWIE-ANCIQCNQCASVCPHAVIRPFLINDEEMANAPRGVKD 726

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV--DAIVEGP--------NFEFATE 129
                +   G + + +  +  + C  C LC   CP    ++V  P          E A  
Sbjct: 727 HALEAKGTKGEKLSFKIQVSPLDCTGCELCVHECPTKEKSLVMVPLQEEMDFGEQENADY 786

Query: 130 TRQELYYDKERLL 142
             +E+ Y K+ +L
Sbjct: 787 LFKEITY-KDDIL 798


>gi|190893106|ref|YP_001979648.1| dihydropyrimidine dehydrogenase [Rhizobium etli CIAT 652]
 gi|190698385|gb|ACE92470.1| dihydropyrimidine dehydrogenase protein [Rhizobium etli CIAT 652]
          Length = 437

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 32/76 (42%), Gaps = 6/76 (7%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI C  C   C     + ++     +G R    +++   +C+ 
Sbjct: 330 QYLNLNYIAKAKIDQDACIKCGRCYIACED--TSHQAITNVVNGLR---HFEVMDEECVG 384

Query: 106 CGLCQEACPV-DAIVE 120
           C LC   CPV + I  
Sbjct: 385 CNLCVSVCPVENCITM 400


>gi|150399742|ref|YP_001323509.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus vannielii SB]
 gi|150012445|gb|ABR54897.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           vannielii SB]
          Length = 395

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 1/75 (1%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E+C  C  C   CP  AI + +       +++      +   CI CG C   CP  A+  
Sbjct: 266 EKCTYCGPCAVKCPTGAINVVNPKGLELPSKKKTDKANEYRMCIRCGACAIKCPTSALKM 325

Query: 121 GPN-FEFATETRQEL 134
           G    E    TR E 
Sbjct: 326 GKIAHEGKEYTRVEF 340



 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              +CI C +C   CP  AI   +G +     +    + ++  +CI C  C E CP   I
Sbjct: 156 DTNKCIYCTICSQTCPWNAIF-VAGKKPQKRQKNIKSFTVNSEECIGCEKCVEVCPGSMI 214



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 3/69 (4%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           N    CI C  C   CP  A+ +    +     +   R + +   C  CG C   CP   
Sbjct: 303 NEYRMCIRCGACAIKCPTSALKM---GKIAHEGKEYTRVEFNPSLCNECGDCINICPQKT 359

Query: 118 IVEGPNFEF 126
           +        
Sbjct: 360 LELTGEANM 368



 Score = 37.8 bits (86), Expect = 0.47,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 1/68 (1%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK-CIYCGLCQEACP 114
           +P  +  C+ C+ C  ICP + I++                 I + K C+ CG+C   CP
Sbjct: 84  FPYSKGHCVLCEKCVDICPVEIISLPGKIDKPKKDVIIPNEPIAVTKDCVACGVCVPECP 143

Query: 115 VDAIVEGP 122
           VDAI    
Sbjct: 144 VDAISIED 151



 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 21/57 (36%), Gaps = 1/57 (1%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           C AC LC   CP   I +E                +   KC YCG C   CP  AI 
Sbjct: 229 CPACSLCVESCPVDVIKLEVEYAPSKPVTEDGLMWL-EEKCTYCGPCAVKCPTGAIN 284



 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 17/78 (21%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTV-----------------RYDIDMIK 102
            + CI C  C   CP  A+T   G    +GT+                    R+      
Sbjct: 31  FKTCIQCFSCANACPTGALTERDGKLVFNGTKCDKDGACQKACPTGIKKVDGRFPYSKGH 90

Query: 103 CIYCGLCQEACPVDAIVE 120
           C+ C  C + CPV+ I  
Sbjct: 91  CVLCEKCVDICPVEIISL 108


>gi|118443355|ref|YP_877927.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium novyi
           NT]
 gi|118133811|gb|ABK60855.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium novyi
           NT]
          Length = 1168

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 45/132 (34%), Gaps = 30/132 (22%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIE----------------SGPRCHDGTRRTV 94
            A+       E CI C  C  +CP   I                      +   G +   
Sbjct: 676 IAISVPEWSMENCIQCNQCSYVCPHAVIRPTLLTEEEYNNKPEGFKAVEAKGIKGEKLYY 735

Query: 95  RYDIDMIKCIYCGLCQEAC--PVDAIVEGP---------NFEFATE-TRQELYYDKERLL 142
             ++ ++ C  CG C E C  P  A+V  P         N+++A   + +E   DK    
Sbjct: 736 AMNVSVLDCTGCGNCAEVCPAPTKALVMKPAATQEAEQANYDYAQTLSVKENPMDK--YT 793

Query: 143 NNGDRWESEIVR 154
             G ++E  ++ 
Sbjct: 794 VKGSQFEKPLLE 805


>gi|86740730|ref|YP_481130.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Frankia sp. CcI3]
 gi|86567592|gb|ABD11401.1| Pyruvate:ferredoxin (flavodoxin) oxidoreductase [Frankia sp. CcI3]
          Length = 1195

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 23/73 (31%), Gaps = 16/73 (21%)

Query: 58  NGEERCIACKLCEAICPAQAITI----------------ESGPRCHDGTRRTVRYDIDMI 101
              + CI C  C   CP  AI +                   P+        +   +   
Sbjct: 705 WDADLCIDCGKCAISCPHAAIRMTLFDPARLADAPASFRHKKPKDRTLAAFRLAVQVAPD 764

Query: 102 KCIYCGLCQEACP 114
            C  CG+C EACP
Sbjct: 765 DCTGCGICVEACP 777



 Score = 38.2 bits (87), Expect = 0.41,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 14/63 (22%)

Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDS 160
             CI CG C  +CP  AI                 +D  RL +    +  +  ++    +
Sbjct: 708 DLCIDCGKCAISCPHAAIRMT-------------LFDPARLADAPASFRHKKPKDRTL-A 753

Query: 161 PYR 163
            +R
Sbjct: 754 AFR 756


>gi|71735100|ref|YP_273634.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71555653|gb|AAZ34864.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           phaseolicola 1448A]
          Length = 280

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 10/75 (13%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           RG    +     E  CI C  C   CP  AI   +           + + + + +C  C 
Sbjct: 66  RGAAPAQVAFIREAECIGCTKCIQACPVDAIVGAAK----------LMHTVIVDECTGCD 115

Query: 108 LCQEACPVDAIVEGP 122
           LC   CPVD I   P
Sbjct: 116 LCVAPCPVDCIEMHP 130


>gi|86151937|ref|ZP_01070150.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|85841045|gb|EAQ58294.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Campylobacter jejuni
           subsp. jejuni 260.94]
          Length = 1186

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/133 (20%), Positives = 43/133 (32%), Gaps = 30/133 (22%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA------------------QAIT 79
           FE G+T    RG   +         CI C  C ++CP                       
Sbjct: 668 FEHGTTEYEKRGVGVMVPRWIE-ANCIQCNQCASVCPHAVIRPFLINDEEMANAPRGVKD 726

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV--DAIVEGP--------NFEFATE 129
                +   G + + +  +  + C  C LC   CP    ++V  P          E A  
Sbjct: 727 HALEAKGTKGEKLSFKIQVSPLDCTGCELCVHECPTKEKSLVMVPLQEEMDFGEQENADY 786

Query: 130 TRQELYYDKERLL 142
             +E+ Y K+ +L
Sbjct: 787 LFKEITY-KDDIL 798


>gi|332159045|ref|YP_004424324.1| indolepyruvate ferredoxin oxidoreductase, subunit alpha [Pyrococcus
           sp. NA2]
 gi|331034508|gb|AEC52320.1| indolepyruvate ferredoxin oxidoreductase, subunit alpha [Pyrococcus
           sp. NA2]
          Length = 648

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 27/79 (34%), Gaps = 9/79 (11%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R       Y   EE+C  CK+C       AI  +   +            +D + C  CG
Sbjct: 579 RAGKQWPIYQVNEEKCTGCKICINAYGCPAIYWDPEKKKA---------RVDPLMCWGCG 629

Query: 108 LCQEACPVDAIVEGPNFEF 126
            C + CP  A  +    E 
Sbjct: 630 GCAQVCPFGAFEKVREGEL 648


>gi|329730472|gb|EGG66862.1| formate dehydrogenase, alpha subunit [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 984

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 13/96 (13%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P+EK               Y     +CI C  C   C    +             R +  
Sbjct: 131 PYEKDYGP----------FYRYDPNQCILCGRCVEACQDIEVNETIRIDWDREHPRVIWD 180

Query: 97  D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           +   I+   C+ CG C   CP +A++E      A  
Sbjct: 181 NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGY 216



 Score = 41.6 bits (96), Expect = 0.037,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 16/68 (23%), Gaps = 8/68 (11%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105
           R        C  C      CE                             Y  D  +CI 
Sbjct: 90  RILEKHMLYCTVCDYNNGDCEIHNTMDVWGLQHQTYEYKEKPYEKDYGPFYRYDPNQCIL 149

Query: 106 CGLCQEAC 113
           CG C EAC
Sbjct: 150 CGRCVEAC 157


>gi|268608043|ref|ZP_06141773.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Ruminococcus
           flavefaciens FD-1]
          Length = 1177

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 16/100 (16%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES--------------- 82
           FE+G+++   RG   +    N ++ C  C  C  +CP   I   +               
Sbjct: 673 FEQGASAYEKRGVAVMVPEWN-QDTCAKCNKCSFVCPHATIRPFALTEAEVAAAPENIKI 731

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            P+    T       +  + C+ CG+C   CP  ++   P
Sbjct: 732 APKPIVKTEYKYTLAVSAMDCMGCGVCIGVCPTKSLKMVP 771


>gi|253734280|ref|ZP_04868445.1| formate dehydrogenase family protein [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|253727696|gb|EES96425.1| formate dehydrogenase family protein [Staphylococcus aureus subsp.
           aureus TCH130]
          Length = 984

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 13/96 (13%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P+EK               Y     +CI C  C   C    +             R +  
Sbjct: 131 PYEKDYGP----------FYRYDPNQCILCGRCVEACQDIEVNETIRIDWDREHPRVIWD 180

Query: 97  D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           +   I+   C+ CG C   CP +A++E      A  
Sbjct: 181 NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGY 216



 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 17/68 (25%), Gaps = 8/68 (11%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105
           R        C  C      CE      A                      Y  D  +CI 
Sbjct: 90  RILEKHMLYCTVCDYNNGDCEIHNTMDAWGLQHQTYEYKEKPYEKDYGPFYRYDPNQCIL 149

Query: 106 CGLCQEAC 113
           CG C EAC
Sbjct: 150 CGRCVEAC 157


>gi|288574184|ref|ZP_06392541.1| protein of unknown function DUF362 [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288569925|gb|EFC91482.1| protein of unknown function DUF362 [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 372

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 29/65 (44%), Gaps = 11/65 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +RCI C  C  ICPA AIT+           R  R   D  KCI C  C E CP +AI
Sbjct: 308 NRKRCILCGRCVEICPADAITM-----------RDRRLVFDYEKCIRCYCCHEMCPANAI 356

Query: 119 VEGPN 123
               N
Sbjct: 357 RLKQN 361



 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 9/46 (19%)

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140
           R + +  +CI CG C E CP DAI               L +D E+
Sbjct: 304 RPEQNRKRCILCGRCVEICPADAITMRDR---------RLVFDYEK 340


>gi|298528790|ref|ZP_07016194.1| protein of unknown function DUF362 [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298512442|gb|EFI36344.1| protein of unknown function DUF362 [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 374

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 11/64 (17%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            RCI+C +C   CP  A+++ S               +D  KCI C  CQE CP DAI  
Sbjct: 311 SRCISCGICAGHCPVGAMSMSSSGPV-----------LDRDKCINCYCCQEMCPEDAIRL 359

Query: 121 GPNF 124
              F
Sbjct: 360 SGRF 363


>gi|192358977|ref|YP_001981503.1| Electron transport complex protein rnfB [Cellvibrio japonicus
           Ueda107]
 gi|190685142|gb|ACE82820.1| Electron transport complex protein rnfB [Cellvibrio japonicus
           Ueda107]
          Length = 223

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 10/62 (16%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C   CP  AI   +             + I   +C  C LC E CPVD I  
Sbjct: 120 DECIGCTKCIQACPMDAILGAAKQ----------MHTIIADECTGCDLCVEPCPVDCIEM 169

Query: 121 GP 122
            P
Sbjct: 170 IP 171



 Score = 33.9 bits (76), Expect = 6.9,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +   +A ++++    H   ++     I   +CI C  C +ACP+DAI
Sbjct: 91  ADLLDVEAPSLDTEHGEHSDVKKVAF--IREDECIGCTKCIQACPMDAI 137


>gi|117919163|ref|YP_868355.1| response regulator receiver protein [Shewanella sp. ANA-3]
 gi|117611495|gb|ABK46949.1| response regulator receiver protein [Shewanella sp. ANA-3]
          Length = 410

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              +C  C  C+  CP  AI   SG            + ID  KC+ CG C   CP  AI
Sbjct: 18  NASKCKGCDACKQFCPTHAIHGASG----------AVHSIDEDKCLSCGQCLINCPFSAI 67

Query: 119 VEGP 122
            E  
Sbjct: 68  EETH 71



 Score = 37.4 bits (85), Expect = 0.73,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 98  IDMIKCIYCGLCQEACPVDAIV 119
           I+  KC  C  C++ CP  AI 
Sbjct: 17  INASKCKGCDACKQFCPTHAIH 38


>gi|188495339|ref|ZP_03002609.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli 53638]
 gi|188490538|gb|EDU65641.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli 53638]
          Length = 187

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   +             + +    C  C LC + CP   I
Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTHCI 162

Query: 119 VEGPNFEFATETRQEL 134
              P  E     + +L
Sbjct: 163 SLQPVAETPDSWKWDL 178



 Score = 35.5 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C  C +ACPVDAI
Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132


>gi|116051508|ref|YP_789656.1| electron transport complex protein RnfC [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|115586729|gb|ABJ12744.1| putative NADH:ubiquinone oxidoreductase, subunit RnfC [Pseudomonas
           aeruginosa UCBPP-PA14]
          Length = 774

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 10/97 (10%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            CI C  C  +CP   +  +       G         ++  CI CG C   CP  +I   
Sbjct: 368 PCIRCGDCARVCPVS-LLPQQLHFFALGDEHEQLLAHNLFDCIECGACAYVCP-SSIPLV 425

Query: 122 PNFEFAT-ETRQELYYDKERLL---NNGDRWESEIVR 154
             +  +  E R++    +++LL    + +R+E    R
Sbjct: 426 QYYRASKAEIREQ----RQKLLKAEQSRERFEQRQAR 458



 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 18/54 (33%), Gaps = 17/54 (31%)

Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNI 156
           CI CG C   CPV  + +  +F                    GD  E  +  N+
Sbjct: 369 CIRCGDCARVCPVSLLPQQLHF-----------------FALGDEHEQLLAHNL 405


>gi|285817972|gb|ADC38459.1| Formate dehydrogenase related protein [Staphylococcus aureus
           04-02981]
          Length = 984

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 13/96 (13%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P+EK               Y     +CI C  C   C    +             R +  
Sbjct: 131 PYEKDYGP----------FYRYDPNQCILCGRCVEACQDIEVNETIRIDWDREHPRVIWD 180

Query: 97  D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           +   I+   C+ CG C   CP +A++E      A  
Sbjct: 181 NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGY 216



 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 17/68 (25%), Gaps = 8/68 (11%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105
           R        C  C      CE      A                      Y  D  +CI 
Sbjct: 90  RILEKHMLYCTVCDYNNGDCEIHNTMDAWGLQHQTYEYKEKPYEKDYGPFYRYDPNQCIL 149

Query: 106 CGLCQEAC 113
           CG C EAC
Sbjct: 150 CGRCVEAC 157


>gi|261207443|ref|ZP_05922129.1| LOW QUALITY PROTEIN: pyruvate decarboxylase:4Fe-4S ferredoxin
           [Enterococcus faecium TC 6]
 gi|260078334|gb|EEW66039.1| LOW QUALITY PROTEIN: pyruvate decarboxylase:4Fe-4S ferredoxin
           [Enterococcus faecium TC 6]
          Length = 684

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 20/93 (21%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTV 94
            AL       +RC  C  C  +CP  AI                 I    R  DG +   
Sbjct: 134 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMEEAPEGFIVREMRGADGVKY-- 191

Query: 95  RYDIDMIKCIYCGLCQEACP--VDAIVEGPNFE 125
           R  + +  C  CGLC EACP    A+V  P  E
Sbjct: 192 RIQVSVEDCTGCGLCVEACPAKEKALVMKPYEE 224


>gi|227499410|ref|ZP_03929521.1| pyruvate synthase [Anaerococcus tetradius ATCC 35098]
 gi|227218472|gb|EEI83715.1| pyruvate synthase [Anaerococcus tetradius ATCC 35098]
          Length = 1178

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/138 (21%), Positives = 43/138 (31%), Gaps = 22/138 (15%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHD 88
           TS   +   AL       + CI C  C  +CP                A T     +   
Sbjct: 671 TSQYEKRGIALFVPEWKIDNCIQCNQCSFVCPHATIRPFLLDEKAKANAPTGFETKKAIG 730

Query: 89  GTRRTVRYDID--MIKCIYCGLCQEAC--PVDAIVEGPNFEFATETRQELYYDKERLLNN 144
                  + I      C+ CG C + C  P  A+      E   +      Y  E+    
Sbjct: 731 RGLEGYEFRIQVSPYDCMGCGNCVDVCPAPKKALEMKAIDEQIEKQADNWLYAHEK---V 787

Query: 145 GDRWESEIVRNIVTDSPY 162
           G + + EI  N V +S +
Sbjct: 788 GYK-DDEIAANNVKNSQF 804


>gi|172087798|ref|YP_206209.2| formate dehydrogenase-H [Vibrio fischeri ES114]
 gi|171902382|gb|AAW87321.2| formate dehydrogenase-H [Vibrio fischeri ES114]
          Length = 1387

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 10/75 (13%)

Query: 59  GEERCIACKLCEAICPAQAITI----------ESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
              RCI+C  C   C  + +             +  R          Y +    C+ CG 
Sbjct: 616 DANRCISCGQCVEACNEKGVHGVLSFMKNEDGTNASRPECRAGFEHGYQMGNSNCVQCGA 675

Query: 109 CQEACPVDAIVEGPN 123
           C +ACPV A+V+  +
Sbjct: 676 CVQACPVGALVDSRD 690



 Score = 35.1 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 16/55 (29%), Gaps = 4/55 (7%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
             Y  G   C+ C  C   CP  A+                   I    C YCG+
Sbjct: 661 HGYQMGNSNCVQCGACVQACPVGALVDSRDKSQGRIEVLKPVDTI----CTYCGV 711


>gi|148270041|ref|YP_001244501.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Thermotoga petrophila RKU-1]
 gi|170288725|ref|YP_001738963.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Thermotoga sp. RQ2]
 gi|281412078|ref|YP_003346157.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Thermotoga naphthophila RKU-10]
 gi|6685754|sp|Q56316|PORD_THEMA RecName: Full=Pyruvate synthase subunit porD; AltName:
           Full=Pyruvate oxidoreductase delta chain; Short=POR;
           AltName: Full=Pyruvic-ferredoxin oxidoreductase subunit
           delta
 gi|1197392|emb|CAA59456.1| delta subunit of pyruvate ferredoxin oxidoreductase [Thermotoga
           maritima MSB8]
 gi|147735585|gb|ABQ46925.1| pyruvate ferredoxin oxidoreductase, delta subunit [Thermotoga
           petrophila RKU-1]
 gi|170176228|gb|ACB09280.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Thermotoga sp. RQ2]
 gi|281373181|gb|ADA66743.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Thermotoga naphthophila RKU-10]
          Length = 99

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 35/92 (38%), Gaps = 10/92 (10%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
            + G+      G   + R    +E+CI C  C   CP QAI  E G              
Sbjct: 16  DKPGTAREYKTGAWRVMRPILHKEKCIDCMFCWLYCPDQAIIQEGGIMKGF--------- 66

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
            +   C  CGLC   CP  AI   P  EF +E
Sbjct: 67  -NYDYCKGCGLCANVCPKQAIEMRPETEFLSE 97


>gi|328955718|ref|YP_004373051.1| hydrogenase large subunit domain protein [Coriobacterium glomerans
           PW2]
 gi|328456042|gb|AEB07236.1| hydrogenase large subunit domain protein [Coriobacterium glomerans
           PW2]
          Length = 517

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQ 110
              ++ CI C  C +ICP  AI     P                R +ID  +C+ CG C 
Sbjct: 152 HIDKDACINCGRCASICPYTAIAHRERPCAAACGMNAIASDEWGRAEIDYDRCVSCGQCL 211

Query: 111 EACPVDAI 118
             CP  AI
Sbjct: 212 VNCPFGAI 219



 Score = 38.2 bits (87), Expect = 0.44,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 20/66 (30%), Gaps = 13/66 (19%)

Query: 57  PNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 C  C    C  ICP  A+T                  ID   CI CG C   CP
Sbjct: 121 YEVTNMCQGCLAHPCREICPTGAVTFVDKKAH-----------IDKDACINCGRCASICP 169

Query: 115 VDAIVE 120
             AI  
Sbjct: 170 YTAIAH 175


>gi|323698251|ref|ZP_08110163.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. ND132]
 gi|323458183|gb|EGB14048.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           desulfuricans ND132]
          Length = 267

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 29/86 (33%), Gaps = 12/86 (13%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P   G    + R +     +    + C+ C  C   CP  AI+ +   +           
Sbjct: 169 PAIPGDRPYKERKKGGPVDFIAVGDSCVQCGTCAEHCPVGAISADDYTKTD--------- 219

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGP 122
                KCI C  C + CP +A    P
Sbjct: 220 ---AEKCIKCCACIKVCPENARTTKP 242


>gi|307297326|ref|ZP_07577132.1| cobyrinic acid ac-diamide synthase [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916586|gb|EFN46968.1| cobyrinic acid ac-diamide synthase [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 283

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 25/81 (30%), Gaps = 11/81 (13%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
             +        L       ++C  C  C  +C   A+++                 +   
Sbjct: 48  EPNIHHEEGVELLLPVIDNKKCTRCGKCAEVCQFGALSV-----------FQTGVMVFES 96

Query: 102 KCIYCGLCQEACPVDAIVEGP 122
            C  CGLC   CP  AI E P
Sbjct: 97  LCHGCGLCTFICPEKAITERP 117


>gi|291541232|emb|CBL14343.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta
           subunits [Roseburia intestinalis XB6B4]
          Length = 288

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 22/97 (22%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ++CI C +CE  C   AI  E                I+  +C YCG C ++CP DA   
Sbjct: 164 DKCIGCGVCEKACRQGAIKCEGNKV-----------TINRDQCNYCGRCVKSCPTDAWEG 212

Query: 121 GPNFEFAT--------ETRQEL---YYDKERLLNNGD 146
              +  +            ++L    +DKE L    D
Sbjct: 213 NSGYLVSFGGLFGNQIYKGEQLLPIVHDKETLFRVTD 249


>gi|260221587|emb|CBA30301.1| Uncharacterized protein yeiA [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 435

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 11/61 (18%)

Query: 59  GEERCIACKLCEAICP---AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
            ++ CI C  C   C     QAIT E   +          +++   +C+ C LC   CPV
Sbjct: 343 NQDNCIQCGRCHIACEDTSHQAITFEKDGK--------RHFEVKEDECVGCNLCVTVCPV 394

Query: 116 D 116
            
Sbjct: 395 P 395


>gi|224024278|ref|ZP_03642644.1| hypothetical protein BACCOPRO_01001 [Bacteroides coprophilus DSM
           18228]
 gi|224017500|gb|EEF75512.1| hypothetical protein BACCOPRO_01001 [Bacteroides coprophilus DSM
           18228]
          Length = 1183

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 27/81 (33%), Gaps = 15/81 (18%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG  A     N  E CI C  C  +CP                A               T
Sbjct: 676 RGVAAFVPEWN-PETCIQCNKCAYVCPHAAIRPFVLDADEQAGANFPTLKAVGKQFDGMT 734

Query: 94  VRYDIDMIKCIYCGLCQEACP 114
            R  +D++ C+ CG C + CP
Sbjct: 735 FRVQVDVMDCLGCGNCADVCP 755



 Score = 33.9 bits (76), Expect = 8.1,   Method: Composition-based stats.
 Identities = 8/20 (40%), Positives = 9/20 (45%)

Query: 99  DMIKCIYCGLCQEACPVDAI 118
           +   CI C  C   CP  AI
Sbjct: 686 NPETCIQCNKCAYVCPHAAI 705


>gi|197336953|ref|YP_002157842.1| putative formate dehydrogenase [Vibrio fischeri MJ11]
 gi|197314205|gb|ACH63654.1| putative formate dehydrogenase [Vibrio fischeri MJ11]
          Length = 1387

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 10/75 (13%)

Query: 59  GEERCIACKLCEAICPAQAITI----------ESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
              RCI+C  C   C  + +             +  R          Y +    C+ CG 
Sbjct: 616 DANRCISCGQCVEACNEKGVHGVLSFMKNEDGTNASRPECRAGFEHGYQMGNSNCVQCGA 675

Query: 109 CQEACPVDAIVEGPN 123
           C +ACPV A+V+  +
Sbjct: 676 CVQACPVGALVDSRD 690



 Score = 35.1 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 16/55 (29%), Gaps = 4/55 (7%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
             Y  G   C+ C  C   CP  A+                   I    C YCG+
Sbjct: 661 HGYQMGNSNCVQCGACVQACPVGALVDSRDKSQGRIEVLKPVDTI----CTYCGV 711


>gi|194442230|ref|YP_002040707.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|226735430|sp|B4T595|RNFB_SALNS RecName: Full=Electron transport complex protein rnfB
 gi|194400893|gb|ACF61115.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
          Length = 192

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   +             + +    C  C LC + CP   I
Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTHCI 162

Query: 119 VEGPNFEFATETRQEL 134
              P  E     + +L
Sbjct: 163 ELRPVNETPDSWKWDL 178



 Score = 35.5 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C  C +ACPVDAI
Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132


>gi|167628355|ref|YP_001678854.1| iron-sulfur cluster-binding protein [Heliobacterium modesticaldum
           Ice1]
 gi|167591095|gb|ABZ82843.1| iron-sulfur cluster-binding protein [Heliobacterium modesticaldum
           Ice1]
          Length = 374

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 17/82 (20%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           PF     S   R   A        ++CI C++C   CPA A+ +E  P+           
Sbjct: 294 PFLARPISRSLRPLPAF-----DRDKCIGCRICLQSCPADALRMERIPQLDK-------- 340

Query: 97  DIDMIKCIYCGLCQEACPVDAI 118
                KCI C  CQE CP  A+
Sbjct: 341 ----DKCIGCLCCQEMCPERAV 358



 Score = 34.3 bits (77), Expect = 6.0,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 101 IKCIYCGLCQEACPVDAIVEGPN 123
            KCI C +C ++CP DA+     
Sbjct: 313 DKCIGCRICLQSCPADALRMERI 335


>gi|164686657|ref|ZP_02210685.1| hypothetical protein CLOBAR_00252 [Clostridium bartlettii DSM
           16795]
 gi|164604047|gb|EDQ97512.1| hypothetical protein CLOBAR_00252 [Clostridium bartlettii DSM
           16795]
          Length = 598

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%)

Query: 59  GEERCIACKLCEAIC-PAQAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPV 115
             ++CI C+ CE +C   Q + + SG      T     +  D+   +C +CG C   CP 
Sbjct: 147 DNDKCILCRRCETMCTEVQTVGVLSGVNRGFNTVVGTFFNADMMDTECTFCGQCVSVCPT 206

Query: 116 DAIVEGPN 123
            A++E  N
Sbjct: 207 GALMEKDN 214


>gi|5734543|emb|CAB52772.1| polyferredoxin [Methanothermobacter thermautotrophicus]
          Length = 441

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 35/102 (34%), Gaps = 6/102 (5%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P++                       C  C  C + C   AI + S  +        V 
Sbjct: 60  CPYDAIRMKTILGEPVRENVPVINPRICRGCGACVSACRTGAIHLTSSGKTG------VH 113

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
            +ID  KC+ CG C  ACP +AI  G     +   R+ +  +
Sbjct: 114 SEIDEDKCVRCGYCARACPTEAIKYGEILPRSVVGRKAVVVN 155



 Score = 41.2 bits (95), Expect = 0.048,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 12/62 (19%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C  C +C   CP  A+ ++               ++D   CI CG CQ+ CPV A+
Sbjct: 384 DHVICQRCGVCVNHCPVDAMAMDGE------------VEVDDDTCILCGECQDICPVTAV 431

Query: 119 VE 120
             
Sbjct: 432 KL 433



 Score = 40.9 bits (94), Expect = 0.065,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 11/79 (13%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI-----------DMIKCIYCGLCQE 111
           C+ C  C  +CP  A+ I          R  +   I           D + C  CG+C  
Sbjct: 337 CVFCGRCRGVCPVDAVEITEEGFRASDGRIYLERRILRGPRSGSVEVDHVICQRCGVCVN 396

Query: 112 ACPVDAIVEGPNFEFATET 130
            CPVDA+      E   +T
Sbjct: 397 HCPVDAMAMDGEVEVDDDT 415



 Score = 40.5 bits (93), Expect = 0.088,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           +RC  C LC   CP  AI +           R     I+   C  CG C  AC   AI  
Sbjct: 48  DRCFGCVLCREACPYDAIRM---KTILGEPVRENVPVINPRICRGCGACVSACRTGAIHL 104

Query: 121 G 121
            
Sbjct: 105 T 105



 Score = 38.2 bits (87), Expect = 0.41,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 11/63 (17%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCI C LC   CP   I   +                    C++CG C+  CPVDA+  
Sbjct: 306 ERCIGCGLCVTECPVGVIEPVTPAPVEIK-----------DGCVFCGRCRGVCPVDAVEI 354

Query: 121 GPN 123
              
Sbjct: 355 TEE 357



 Score = 35.5 bits (80), Expect = 2.3,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 20/63 (31%), Gaps = 8/63 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +  CI C  C  +CP+               +      ID   C  C  C + CP  AI
Sbjct: 155 NQRDCIGCMTCTRVCPS--------RGAIKVGKINRLPYIDPSYCARCEECMDVCPSAAI 206

Query: 119 VEG 121
              
Sbjct: 207 KYS 209



 Score = 35.1 bits (79), Expect = 3.1,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 27/72 (37%), Gaps = 12/72 (16%)

Query: 54  RRYPNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
             Y    E+C  C  K C   CP  A+ I+      +             +C  C LC+E
Sbjct: 9   VDYEIHHEKCRNCPDKPCLNACPVDAVHIDPDTGEVE----------IDDRCFGCVLCRE 58

Query: 112 ACPVDAIVEGPN 123
           ACP DAI     
Sbjct: 59  ACPYDAIRMKTI 70



 Score = 33.9 bits (76), Expect = 7.8,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 11/19 (57%)

Query: 100 MIKCIYCGLCQEACPVDAI 118
             +CI CGLC   CPV  I
Sbjct: 305 EERCIGCGLCVTECPVGVI 323


>gi|56418994|ref|YP_146312.1| formate dehydrogenase chain A [Geobacillus kaustophilus HTA426]
 gi|56378836|dbj|BAD74744.1| formate dehydrogenase chain A [Geobacillus kaustophilus HTA426]
          Length = 987

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 27/83 (32%), Gaps = 3/83 (3%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---YD 97
                    + +   Y     +CIAC  C   C    +             R V      
Sbjct: 129 RPKVDPSEVDMSHPFYRYDPNQCIACGQCVEACQNLQVNETLSIDWEAERPRVVWDGGVP 188

Query: 98  IDMIKCIYCGLCQEACPVDAIVE 120
           I+   C+ CG C   CP +A++E
Sbjct: 189 INESSCVSCGQCVTVCPCNALME 211



 Score = 38.5 bits (88), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q           +       Y  D  +
Sbjct: 91  RLLENHLLYCTVCDNNNGNCKLHNTAEMMQIEHQTYPYRPKVDPSEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C EAC
Sbjct: 151 CIACGQCVEAC 161


>gi|327311599|ref|YP_004338496.1| 2-ketoisovalerate ferredoxin oxidoreductase subunit delta
           [Thermoproteus uzoniensis 768-20]
 gi|326948078|gb|AEA13184.1| 2-ketoisovalerate ferredoxin oxidoreductase, delta subunit
           [Thermoproteus uzoniensis 768-20]
          Length = 87

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 10/65 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              +CI C +C   CP   I  E G +            ID   C  CG+C   CP  AI
Sbjct: 30  DLNKCIDCGICWLYCPESVIDWEKGQKIK----------IDYTYCKGCGICAHECPTKAI 79

Query: 119 VEGPN 123
              P 
Sbjct: 80  EMVPE 84


>gi|323703143|ref|ZP_08114797.1| hydrogenase, Fe-only [Desulfotomaculum nigrificans DSM 574]
 gi|323531920|gb|EGB21805.1| hydrogenase, Fe-only [Desulfotomaculum nigrificans DSM 574]
          Length = 593

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 24/66 (36%), Gaps = 5/66 (7%)

Query: 59  GEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
              +CI C  C A+C       A+              +    I    CIYCG C   CP
Sbjct: 144 DMNKCIKCGRCVAVCDQVQGIGALGYVRHGAEEIIDTVSGLP-IAETSCIYCGQCINVCP 202

Query: 115 VDAIVE 120
           V AI E
Sbjct: 203 VGAITE 208


>gi|291547662|emb|CBL20770.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta
           subunits [Ruminococcus sp. SR1/5]
          Length = 287

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 11/56 (19%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           CI C +CE  C   AI+ E                ID  KC YCG C ++CPVDA 
Sbjct: 166 CIHCGVCEKACRENAISFEDDKLV-----------IDTEKCNYCGRCAKSCPVDAW 210


>gi|118444967|ref|YP_878935.1| Fe-hydrogenase large subunit family protein [Clostridium novyi NT]
 gi|118135423|gb|ABK62467.1| Fe-hydrogenase large subunit family protein [Clostridium novyi NT]
          Length = 494

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 7/69 (10%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGT-------RRTVRYDIDMIKCIYCGLC 109
              ++ C  C +C+ +CP  AI+    P              +  R +I+  +CI CG C
Sbjct: 134 YINQDVCRECGMCKQVCPYNAISEVMRPCKKVCPTEAICISPQDRRAEINDEECISCGAC 193

Query: 110 QEACPVDAI 118
            +ACP  AI
Sbjct: 194 MKACPFGAI 202


>gi|111024041|ref|YP_707013.1| ferredoxin--NADP(+) reductase [Rhodococcus jostii RHA1]
 gi|110823571|gb|ABG98855.1| probable ferredoxin--NADP(+) reductase [Rhodococcus jostii RHA1]
          Length = 467

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 23/70 (32%), Gaps = 5/70 (7%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C     C  +CP   I    G     G        ID   CI C  C EACP  AI   
Sbjct: 8   HCCKDASCVRVCPQNCIHPAPGEA---GFESAETLFIDPRSCIDCTACVEACPASAIK-- 62

Query: 122 PNFEFATETR 131
           P +      R
Sbjct: 63  PEWTLTITER 72


>gi|82751902|ref|YP_417643.1| formate dehydrogenase alpha subunit [Staphylococcus aureus RF122]
 gi|123727500|sp|Q2YYT1|FDHL_STAAB RecName: Full=Putative formate dehydrogenase SAB2186c
 gi|82657433|emb|CAI81875.1| formate dehydrogenase alpha subunit [Staphylococcus aureus RF122]
          Length = 984

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 13/96 (13%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P+EK               Y     +CI C  C   C    +             R +  
Sbjct: 131 PYEKDYGP----------FYRYDPNQCILCGRCVEACQDIEVNETIRIDWDREHPRVIWD 180

Query: 97  D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           +   I+   C+ CG C   CP +A++E      A  
Sbjct: 181 NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGY 216



 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 17/68 (25%), Gaps = 8/68 (11%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105
           R        C  C      CE      A                      Y  D  +CI 
Sbjct: 90  RILEKHMLYCTVCDYNNGDCEIHNTMDAWGLQHQTYEYKEKPYEKDYGPFYRYDPNQCIL 149

Query: 106 CGLCQEAC 113
           CG C EAC
Sbjct: 150 CGRCVEAC 157


>gi|70725749|ref|YP_252663.1| hypothetical protein SH0748 [Staphylococcus haemolyticus JCSC1435]
 gi|123776168|sp|Q4L8G8|FDHL_STAHJ RecName: Full=Putative formate dehydrogenase SH0748
 gi|68446473|dbj|BAE04057.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
          Length = 984

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 13/96 (13%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P+EK               Y    ++CI C  C   C    +        +    R +  
Sbjct: 131 PYEKDYGP----------FYRYDPDQCILCGRCVEACQDIEVNETISIDWNREHPRVIWD 180

Query: 97  D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           +   I+   C+ CG C   CP +A++E      A  
Sbjct: 181 NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGY 216



 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 19/68 (27%), Gaps = 8/68 (11%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESG----PRCHDGTRRTVRYDIDMIKCIY 105
           R        C  C      CE      A  +E                  Y  D  +CI 
Sbjct: 90  RILEKHMLYCTVCDYNNGDCEIHNAMDAWGLEEQSYEYKTKPYEKDYGPFYRYDPDQCIL 149

Query: 106 CGLCQEAC 113
           CG C EAC
Sbjct: 150 CGRCVEAC 157


>gi|332098105|gb|EGJ03078.1| electron transport complex, RnfABCDGE type, B subunit [Shigella
           dysenteriae 155-74]
          Length = 192

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   +             + +    C  C LC + CP   I
Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTHCI 162

Query: 119 VEGPNFEFATETRQEL 134
              P  E     + +L
Sbjct: 163 SLQPVAETPDSWKWDL 178



 Score = 35.5 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C  C +ACPVDAI
Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132


>gi|291549481|emb|CBL25743.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric
           [Ruminococcus torques L2-14]
          Length = 1190

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 29/94 (30%), Gaps = 15/94 (15%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQ-----AITIESGPRCHDGTR---------RT 93
           RG        N   +CI C  C  +CP       A+T E   +  +G +           
Sbjct: 680 RGIAVDIPVWN-PNQCIQCNRCAYVCPHAVIRPVALTEEEVAQAPEGLKTLDMIGMPGMK 738

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
               +    C  CG C   CP     E    E A
Sbjct: 739 FTMTVSAYDCTGCGSCVNVCPGKKNKETGEVEKA 772


>gi|256783977|ref|ZP_05522408.1| respiratory chain oxidoreductase [Streptomyces lividans TK24]
          Length = 279

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 4/75 (5%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQE 111
           Y     +CI C  C   C  Q     +      G    +  +    +    C+YCG C E
Sbjct: 138 YVRDYGKCILCYKCVDACGDQWQNSFAISVAGRGFDARISVEQDGPLTDSACVYCGNCIE 197

Query: 112 ACPVDAIVEGPNFEF 126
            CP  A+     F+ 
Sbjct: 198 VCPTGALSFKSEFDM 212


>gi|294889633|ref|XP_002772895.1| pyruvate:ferredoxin oxidoreductase/NADPH-cytochrome P450, putative
           [Perkinsus marinus ATCC 50983]
 gi|239877475|gb|EER04711.1| pyruvate:ferredoxin oxidoreductase/NADPH-cytochrome P450, putative
           [Perkinsus marinus ATCC 50983]
          Length = 1831

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 30/93 (32%), Gaps = 17/93 (18%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAI---------------TIESGPRCHDGTRRTVR 95
            AL       ++C  C +C   CP   I               T ++           + 
Sbjct: 738 VALMIPIVDMDKCTHCNICAMSCPHACIRPFLLSQAEDDAKPSTFDTRKAKGGAEVAGLH 797

Query: 96  YDID--MIKCIYCGLCQEACPVDAIVEGPNFEF 126
           Y I    + C  C +C  ACP DA+      +F
Sbjct: 798 YRIQVSPLDCTGCEVCVNACPDDALRMEHLSDF 830


>gi|222149525|ref|YP_002550482.1| dihydropyrimidine dehydrogenase [Agrobacterium vitis S4]
 gi|221736507|gb|ACM37470.1| dihydroorotate dihydrogenase protein [Agrobacterium vitis S4]
          Length = 437

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 6/76 (7%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI C  C   C     + ++     DG R+   +++   +C+ 
Sbjct: 330 QYLNLNYIAKAQIDQDACIKCGRCHIACED--TSHQAITSIVDGARK---FEVMEDECVG 384

Query: 106 CGLCQEACPV-DAIVE 120
           C LC   CPV + I  
Sbjct: 385 CNLCVNVCPVENCITM 400


>gi|107103021|ref|ZP_01366939.1| hypothetical protein PaerPA_01004090 [Pseudomonas aeruginosa PACS2]
          Length = 774

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 10/97 (10%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            CI C  C  +CP   +  +       G         ++  CI CG C   CP  +I   
Sbjct: 368 PCIRCGDCAQVCPVS-LLPQQLHFFALGDEHEQLLAHNLFDCIECGACAYVCP-SSIPLV 425

Query: 122 PNFEFAT-ETRQELYYDKERLL---NNGDRWESEIVR 154
             +  +  E R++    +++LL    + +R+E    R
Sbjct: 426 QYYRASKAEIREQ----RQKLLKAEQSRERFEQRQAR 458



 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 17/54 (31%)

Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNI 156
           CI CG C + CPV  + +  +F                    GD  E  +  N+
Sbjct: 369 CIRCGDCAQVCPVSLLPQQLHF-----------------FALGDEHEQLLAHNL 405


>gi|16764806|ref|NP_460421.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|161614123|ref|YP_001588088.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167994289|ref|ZP_02575381.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|168240974|ref|ZP_02665906.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|168264619|ref|ZP_02686592.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|194448094|ref|YP_002045496.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|197265920|ref|ZP_03165994.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|198244365|ref|YP_002215677.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|24638186|sp|Q8ZPM1|RNFB_SALTY RecName: Full=Electron transport complex protein rnfB
 gi|189043388|sp|A9N024|RNFB_SALPB RecName: Full=Electron transport complex protein rnfB
 gi|226735426|sp|B5FIE6|RNFB_SALDC RecName: Full=Electron transport complex protein rnfB
 gi|226735429|sp|B4THD5|RNFB_SALHS RecName: Full=Electron transport complex protein rnfB
 gi|16419979|gb|AAL20380.1| putative alternative beta subunit of Na+-transporting
           NADH:ubiquinone oxidoreductase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|161363487|gb|ABX67255.1| hypothetical protein SPAB_01862 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194406398|gb|ACF66617.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|197244175|gb|EDY26795.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|197938881|gb|ACH76214.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|205327845|gb|EDZ14609.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|205339698|gb|EDZ26462.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|205346940|gb|EDZ33571.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|261246662|emb|CBG24472.1| Electron transport complex protein rnfB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267993348|gb|ACY88233.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301157991|emb|CBW17486.1| Electron transport complex protein rnfB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312912441|dbj|BAJ36415.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321224077|gb|EFX49140.1| Electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323129728|gb|ADX17158.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|326623423|gb|EGE29768.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|332988343|gb|AEF07326.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 192

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   +             + +    C  C LC + CP   I
Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTHCI 162

Query: 119 VEGPNFEFATETRQEL 134
              P  E     + +L
Sbjct: 163 ELRPVNETPDSWKWDL 178



 Score = 35.5 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C  C +ACPVDAI
Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132


>gi|306817518|ref|ZP_07451262.1| pyridine nucleotide-disulfide oxidoreductase [Mobiluncus mulieris
           ATCC 35239]
 gi|307699830|ref|ZP_07636881.1| pyridine nucleotide-disulfide oxidoreductase [Mobiluncus mulieris
           FB024-16]
 gi|304649742|gb|EFM47023.1| pyridine nucleotide-disulfide oxidoreductase [Mobiluncus mulieris
           ATCC 35239]
 gi|307614868|gb|EFN94086.1| pyridine nucleotide-disulfide oxidoreductase [Mobiluncus mulieris
           FB024-16]
          Length = 550

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 21/59 (35%), Gaps = 10/59 (16%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            C  C  C  +CP  AI             +  +Y      C  CG+C E CP  AI  
Sbjct: 497 NCFGCDNCFGVCPDNAIKKI----------KPTQYVFKYDYCKGCGICAEECPCGAIDM 545


>gi|293401032|ref|ZP_06645177.1| Fe-hydrogenase large subunit family protein [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291306058|gb|EFE47302.1| Fe-hydrogenase large subunit family protein [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 504

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 6/66 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQEA 112
            +++CI C  C  +CP  AI     P                R +ID  KC+ CG+C   
Sbjct: 147 DQDKCIKCGRCMDVCPYGAINKLERPCARSCGMDAIKSDEFGRAEIDHEKCVSCGMCLVN 206

Query: 113 CPVDAI 118
           CP  AI
Sbjct: 207 CPFGAI 212



 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 13/61 (21%)

Query: 61  ERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C  C    C+ +CP  AI+I +G              ID  KCI CG C + CP  AI
Sbjct: 118 DTCQGCLAHPCKEVCPKDAISIINGKSV-----------IDQDKCIKCGRCMDVCPYGAI 166

Query: 119 V 119
            
Sbjct: 167 N 167


>gi|283471529|emb|CAQ50740.1| molybdopterin oxidoreductase family protein [Staphylococcus aureus
           subsp. aureus ST398]
          Length = 984

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 13/96 (13%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P+EK               Y     +CI C  C   C    +             R +  
Sbjct: 131 PYEKDYGP----------FYRYDPNQCILCGRCVEACQDIEVNETIRIDWDREHPRVIWD 180

Query: 97  D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           +   I+   C+ CG C   CP +A++E      A  
Sbjct: 181 NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGY 216



 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 17/68 (25%), Gaps = 8/68 (11%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105
           R        C  C      CE      A                      Y  D  +CI 
Sbjct: 90  RILEKHMLYCTVCDYNNGDCEIHNTMDAWGLQHQTYEYKEKPYEKDYGPFYRYDPNQCIL 149

Query: 106 CGLCQEAC 113
           CG C EAC
Sbjct: 150 CGRCVEAC 157


>gi|282917657|ref|ZP_06325408.1| formate dehydrogenase [Staphylococcus aureus subsp. aureus D139]
 gi|283767400|ref|ZP_06340315.1| formate dehydrogenase [Staphylococcus aureus subsp. aureus H19]
 gi|282318412|gb|EFB48771.1| formate dehydrogenase [Staphylococcus aureus subsp. aureus D139]
 gi|283461279|gb|EFC08363.1| formate dehydrogenase [Staphylococcus aureus subsp. aureus H19]
          Length = 984

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 13/96 (13%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P+EK               Y     +CI C  C   C    +             R +  
Sbjct: 131 PYEKDYGP----------FYRYDPNQCILCGRCVEACQDIEVNETIRIDWDREHPRVIWD 180

Query: 97  D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           +   I+   C+ CG C   CP +A++E      A  
Sbjct: 181 NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGY 216



 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 17/68 (25%), Gaps = 8/68 (11%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105
           R        C  C      CE      A                      Y  D  +CI 
Sbjct: 90  RILEKHMLYCTVCDYNNGDCEIHNTMDAWGLQHQTYEYKEKPYEKDYGPFYRYDPNQCIL 149

Query: 106 CGLCQEAC 113
           CG C EAC
Sbjct: 150 CGRCVEAC 157


>gi|261403708|ref|YP_003247932.1| archaeoflavoprotein, MJ0208 family [Methanocaldococcus vulcanius
           M7]
 gi|261370701|gb|ACX73450.1| archaeoflavoprotein, MJ0208 family [Methanocaldococcus vulcanius
           M7]
          Length = 235

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 11/69 (15%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            Y    ++C  C  C   CP  AI             R    +I + KC+ CG C+  CP
Sbjct: 142 PYSIDRKKCNCCLKCVEACPNGAI-----------IVRKRFPEIVLSKCLGCGRCKRVCP 190

Query: 115 VDAIVEGPN 123
             AI+EG  
Sbjct: 191 NGAIIEGKE 199



 Score = 34.3 bits (77), Expect = 5.4,   Method: Composition-based stats.
 Identities = 14/29 (48%), Positives = 15/29 (51%)

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           Y ID  KC  C  C EACP  AI+    F
Sbjct: 143 YSIDRKKCNCCLKCVEACPNGAIIVRKRF 171


>gi|258423682|ref|ZP_05686569.1| formate dehydrogenase alpha subunit [Staphylococcus aureus A9635]
 gi|257846074|gb|EEV70101.1| formate dehydrogenase alpha subunit [Staphylococcus aureus A9635]
          Length = 984

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 13/96 (13%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P+EK               Y     +CI C  C   C    +             R +  
Sbjct: 131 PYEKDYGP----------FYRYDPNQCILCGRCVEACQDIEVNETIRIDWDREHPRVIWD 180

Query: 97  D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           +   I+   C+ CG C   CP +A++E      A  
Sbjct: 181 NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGY 216



 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 17/68 (25%), Gaps = 8/68 (11%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105
           R        C  C      CE      A                      Y  D  +CI 
Sbjct: 90  RILEKHMLYCTVCDYNNGDCEIHNTMDAWGLQHQTYEYKEKPYEKDYGPFYRYDPNQCIL 149

Query: 106 CGLCQEAC 113
           CG C EAC
Sbjct: 150 CGRCVEAC 157


>gi|255283527|ref|ZP_05348082.1| iron-sulfur cluster-binding protein [Bryantella formatexigens DSM
           14469]
 gi|255265984|gb|EET59189.1| iron-sulfur cluster-binding protein [Bryantella formatexigens DSM
           14469]
          Length = 372

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 11/60 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + CI C  C  IC   A  +                 ID  KC+ CG C   CP DA+
Sbjct: 193 NTDACIGCGACSRICAHGAAVVTDKKAS-----------IDHNKCVGCGRCIGVCPKDAV 241


>gi|225076878|ref|ZP_03720077.1| hypothetical protein NEIFLAOT_01929 [Neisseria flavescens
           NRL30031/H210]
 gi|224951764|gb|EEG32973.1| hypothetical protein NEIFLAOT_01929 [Neisseria flavescens
           NRL30031/H210]
          Length = 283

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   S           + + +   +C  CGLC   CPVD I
Sbjct: 77  DEAVCIGCTACIRACPVDAIMGASK----------LMHTVISDECTGCGLCVTPCPVDCI 126

Query: 119 VEGP 122
              P
Sbjct: 127 DMVP 130



 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/22 (59%), Positives = 14/22 (63%)

Query: 98  IDMIKCIYCGLCQEACPVDAIV 119
           ID   CI C  C  ACPVDAI+
Sbjct: 76  IDEAVCIGCTACIRACPVDAIM 97


>gi|239627945|ref|ZP_04670976.1| NADH dehydrogenase [Clostridiales bacterium 1_7_47_FAA]
 gi|239518091|gb|EEQ57957.1| NADH dehydrogenase [Clostridiales bacterium 1_7_47FAA]
          Length = 596

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 35/94 (37%), Gaps = 14/94 (14%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
           +FF+ +   +    +           AL  Y    ++C  C LC   CPA AI       
Sbjct: 515 HFFRDEYEAHIKERRCPAGVC----KALLSYVIDRDKCRGCTLCARTCPAGAIVGS---- 566

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
                     + ID+ KCI CG C E C   AI 
Sbjct: 567 ------VKNPHVIDLNKCIKCGACMEKCKFGAIY 594


>gi|154495354|ref|ZP_02034359.1| hypothetical protein PARMER_04411 [Parabacteroides merdae ATCC
           43184]
 gi|154085278|gb|EDN84323.1| hypothetical protein PARMER_04411 [Parabacteroides merdae ATCC
           43184]
          Length = 561

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 35/81 (43%), Gaps = 13/81 (16%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           EK   S + R    L +Y    E+C  C LC  +CP  AIT +          + V + I
Sbjct: 492 EKRCPSHQCR---ELTQYFINPEKCKGCTLCARMCPVNAITGD----------KKVPHVI 538

Query: 99  DMIKCIYCGLCQEACPVDAIV 119
           D   CI CG C E C   AI 
Sbjct: 539 DPQTCIRCGSCIERCKFGAIY 559


>gi|119897731|ref|YP_932944.1| electron transport complex protein RnfB [Azoarcus sp. BH72]
 gi|166225080|sp|A1K5F2|RNFB_AZOSB RecName: Full=Electron transport complex protein rnfB; AltName:
           Full=Nitrogen fixation protein rnfB
 gi|119670144|emb|CAL94057.1| probable electron transport complex protein RnfB [Azoarcus sp.
           BH72]
          Length = 183

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 28/93 (30%), Gaps = 10/93 (10%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E    S     E         E  CI C LC   CP  AI   +             + +
Sbjct: 89  EFKPLSAEHGEEKPKAVAYIDENVCIGCTLCLQACPVDAIVGAAKQ----------MHTV 138

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
               C  C LC   CPVD I   P  E     R
Sbjct: 139 VDPLCTGCELCVAPCPVDCIYMEPVRETVQTWR 171


>gi|78223461|ref|YP_385208.1| electron transfer flavoprotein subunit alpha [Geobacter
           metallireducens GS-15]
 gi|78194716|gb|ABB32483.1| Electron transfer flavoprotein, alpha subunit [Geobacter
           metallireducens GS-15]
          Length = 442

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/116 (25%), Positives = 40/116 (34%), Gaps = 25/116 (21%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACK-LCEAICPAQAITIESGPRCHDGTRRTVRY 96
             K       RG   L         CIAC   C+++CP   + +                
Sbjct: 3   EAKRPMKKP-RGVAQLI-----AGACIACGARCQSVCPVNCVDMNDAGEPV--------- 47

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEI 152
            ++  KCI C  C + CP  A+       F  E R+ L    + L   GD  E EI
Sbjct: 48  -VNSAKCIGCQKCVKICPATALEMY----FTPEERKIL----DELAAQGDPVEEEI 94


>gi|323440010|gb|EGA97725.1| formate dehydrogenase alpha subunit [Staphylococcus aureus O11]
          Length = 984

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 13/96 (13%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P+EK               Y     +CI C  C   C    +             R +  
Sbjct: 131 PYEKDYGP----------FYRYDPNQCILCGRCVEACQDIEVNETIRIDWDREHPRVIWD 180

Query: 97  D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           +   I+   C+ CG C   CP +A++E      A  
Sbjct: 181 NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGY 216



 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 17/68 (25%), Gaps = 8/68 (11%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105
           R        C  C      CE      A                      Y  D  +CI 
Sbjct: 90  RILEKHMLYCTVCDYNNGDCEIHNTMDAWGLQHQTYEYKEKPYEKDYGPFYRYDPNQCIL 149

Query: 106 CGLCQEAC 113
           CG C EAC
Sbjct: 150 CGRCVEAC 157


>gi|317489034|ref|ZP_07947561.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|316911901|gb|EFV33483.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
          Length = 394

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 6/73 (8%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                   C +C++C   CP  AI          G            +C+ CG C++ CP
Sbjct: 287 CVVIDGRACSSCRMCATFCPTGAIRKFDNDDGTLGVYHY------PGECVKCGSCRDVCP 340

Query: 115 VDAIVEGPNFEFA 127
            +AI        A
Sbjct: 341 ENAIELLDEVRPA 353



 Score = 40.9 bits (94), Expect = 0.062,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 11/55 (20%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           +AC  C   C +  I +  G              +D  KCI CG C   CP  A+
Sbjct: 43  VACLKCADACTSGCIALVDGE-----------LRVDAAKCIGCGTCATVCPTSAL 86


>gi|291514594|emb|CBK63804.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric
           [Alistipes shahii WAL 8301]
          Length = 1157

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 29/92 (31%), Gaps = 15/92 (16%)

Query: 62  RCIACKLCEAICPAQ-------------AITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
            CI C  C  +CP               A  +E      +      R  I  + C  C  
Sbjct: 674 NCIQCNQCAYVCPHAVIRPFLATEEEAAASGVEWKQGLGETKEYKFRIQISPMDCTGCSN 733

Query: 109 CQEACPV--DAIVEGPNFEFATETRQELYYDK 138
           C + CP    A+V  P  E   + +   Y  K
Sbjct: 734 CVDVCPAKDKALVMRPLEEQMPQQKNWDYITK 765


>gi|187932652|ref|YP_001884615.1| iron-dependent hydrogenase [Clostridium botulinum B str. Eklund
           17B]
 gi|187720805|gb|ACD22026.1| iron-dependent hydrogenase [Clostridium botulinum B str. Eklund
           17B]
          Length = 494

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGT------RRTVRYDIDMIKCIYCGLCQ 110
               ++C  C +C+  CP  AI  +  P                R  I   KC+ CG C 
Sbjct: 135 YIDPDKCKECGMCKKACPYDAIAEDMRPCKRSCPTGALDINSDKRAMIKQEKCVNCGACM 194

Query: 111 EACPVDAI 118
            ACP  A+
Sbjct: 195 AACPFGAL 202



 Score = 39.7 bits (91), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 13/60 (21%)

Query: 63  CIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           C  C    C+++C   AIT   G              ID  KC  CG+C++ACP DAI E
Sbjct: 110 CRNCIAHKCQSVCNFGAITYVEGKAY-----------IDPDKCKECGMCKKACPYDAIAE 158


>gi|28211156|ref|NP_782100.1| putative ferredoxin-type protein napH [Clostridium tetani E88]
 gi|28203596|gb|AAO36037.1| conserved protein, putative ferredoxin-type protein napH
           [Clostridium tetani E88]
          Length = 304

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 42/129 (32%), Gaps = 26/129 (20%)

Query: 2   RIFRCNVSFLF-LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTS----PRFRGEHALRRY 56
           +  R ++  LF LK  +    + L   F        PF K          F  + +L  Y
Sbjct: 182 KGIRSSLGALFALKSIILVMVILLSIMF------YRPFCKWICPLGAFYSFFNKISLYSY 235

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              ++ C+ C  C  +C       +S                    CI CG C + CP  
Sbjct: 236 DFNKDNCVNCGKCRRVCKMDVDITKSTTHNE---------------CIRCGECIKVCPTK 280

Query: 117 AIVEGPNFE 125
           AI     +E
Sbjct: 281 AISTFWGYE 289


>gi|332703321|ref|ZP_08423409.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332553470|gb|EGJ50514.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 1232

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 28/90 (31%), Gaps = 18/90 (20%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR----------------RTV 94
            A+       E CI C  C  +CP  AI                                
Sbjct: 677 VAINVPQWVPENCIQCNQCAFVCPHSAILPVLAKEEELVGAPANFTALEAKGKELKGYKF 736

Query: 95  RYDIDMIKCIYCGLCQEACP--VDAIVEGP 122
           R  I+ + C+ CG C + CP    A+V  P
Sbjct: 737 RIQINTLDCMGCGNCADICPPKEKALVMQP 766


>gi|325831143|ref|ZP_08164467.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1]
 gi|325487064|gb|EGC89510.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1]
          Length = 394

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 6/73 (8%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                   C +C++C   CP  AI          G            +C+ CG C++ CP
Sbjct: 287 CVVIDGRACSSCRMCATFCPTGAIRKFDNDDGTLGVYHY------PGECVKCGSCRDVCP 340

Query: 115 VDAIVEGPNFEFA 127
            +AI        A
Sbjct: 341 ENAIELLDEVRPA 353



 Score = 40.9 bits (94), Expect = 0.061,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 11/55 (20%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           +AC  C   C +  I +  G              +D  KCI CG C   CP  A+
Sbjct: 43  VACLKCADACTSGCIALVDGE-----------LRVDAAKCIGCGTCATVCPTSAL 86


>gi|319400679|gb|EFV88904.1| formate dehydrogenase, alpha subunit [Staphylococcus epidermidis
           FRI909]
          Length = 983

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 29/89 (32%), Gaps = 13/89 (14%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P+EK               Y     +CI C  C   C    +             R +  
Sbjct: 131 PYEKDYGP----------FYRYDPNQCILCGRCVEACQDVEVNETIRIDWERDHPRVIWD 180

Query: 97  D---IDMIKCIYCGLCQEACPVDAIVEGP 122
           +   I+   C+ CG C   CP +A++E  
Sbjct: 181 NDVPINESSCVSCGQCATVCPCNAMMEVN 209



 Score = 42.4 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 17/68 (25%), Gaps = 8/68 (11%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105
           R        C  C      CE                  R          Y  D  +CI 
Sbjct: 90  RILEKHMLYCTVCDYNNGDCEIHNTMDKWGIQHQTYEYKRKPYEKDYGPFYRYDPNQCIL 149

Query: 106 CGLCQEAC 113
           CG C EAC
Sbjct: 150 CGRCVEAC 157


>gi|227876559|ref|ZP_03994670.1| glutamate synthase (NADPH) small subunit [Mobiluncus mulieris ATCC
           35243]
 gi|269977760|ref|ZP_06184720.1| glutamate synthase [Mobiluncus mulieris 28-1]
 gi|227842873|gb|EEJ53071.1| glutamate synthase (NADPH) small subunit [Mobiluncus mulieris ATCC
           35243]
 gi|269934064|gb|EEZ90638.1| glutamate synthase [Mobiluncus mulieris 28-1]
          Length = 550

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 21/59 (35%), Gaps = 10/59 (16%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            C  C  C  +CP  AI             +  +Y      C  CG+C E CP  AI  
Sbjct: 497 NCFGCDNCFGVCPDNAIKKI----------KPTQYVFKYDYCKGCGICAEECPCGAIDM 545


>gi|212636385|ref|YP_002312910.1| iron-sulfur binding 4Fe-4S ferredoxin [Shewanella piezotolerans
           WP3]
 gi|212557869|gb|ACJ30323.1| 4Fe-4S ferredoxin, iron-sulfur binding:FAD linked oxidase
           [Shewanella piezotolerans WP3]
          Length = 960

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 9/91 (9%)

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           +     I  +         +     D  + KCI CG C++ CP  A+   P    AT  R
Sbjct: 532 LLNPGVILNDDSQIHVKNIKPCPVVDDLVDKCIECGFCEKTCPTSALNMSPRQRIATL-R 590

Query: 132 QELYYDKERLLNNGDRWESEIVRNIVTDSPY 162
           +      ERL  +GD+   +    +   + Y
Sbjct: 591 E-----IERLEQSGDK---QAASEMRAAAKY 613



 Score = 37.4 bits (85), Expect = 0.74,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 26/72 (36%), Gaps = 18/72 (25%)

Query: 61  ERCIACKLCEAICPAQAITIES-----------------GPRCHDGTRRTVRYDIDMIKC 103
           ++CI C  CE  CP  A+ +                     +     R   +YD+    C
Sbjct: 561 DKCIECGFCEKTCPTSALNMSPRQRIATLREIERLEQSGDKQAASEMRAAAKYDVV-DTC 619

Query: 104 IYCGLCQEACPV 115
             C LC  ACPV
Sbjct: 620 AACQLCTIACPV 631


>gi|126727358|ref|ZP_01743193.1| iron-sulfur cluster-binding protein [Rhodobacterales bacterium
           HTCC2150]
 gi|126703353|gb|EBA02451.1| iron-sulfur cluster-binding protein [Rhodobacterales bacterium
           HTCC2150]
          Length = 650

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 9/82 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +E C  C  C ++CP+ A+                +       C+ CGLC   CP +AI
Sbjct: 498 DKESCTLCLSCVSLCPSGALADNPD---------MPQLRFQEDACLQCGLCSNICPENAI 548

Query: 119 VEGPNFEFATETRQELYYDKER 140
              P  +       +    +E 
Sbjct: 549 TLAPQMDLTDTVLSQRVVHEEE 570



 Score = 40.1 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 30/97 (30%), Gaps = 17/97 (17%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           C  C  +CP  AI                   ID + C  CG C   CP  AI       
Sbjct: 278 CSNCLNVCPTGAIVSAGE-----------HVAIDPMICAGCGACSAVCPSGAISYDAPPV 326

Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPY 162
                R  L      L +   +   +  R +V D+ +
Sbjct: 327 ETVFQRLSL------LASTYRKAGGQDARLLVHDADH 357


>gi|77918675|ref|YP_356490.1| ferredoxin [Pelobacter carbinolicus DSM 2380]
 gi|77544758|gb|ABA88320.1| ferredoxin [Pelobacter carbinolicus DSM 2380]
          Length = 417

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 28/82 (34%), Gaps = 12/82 (14%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
               F  + +L       + C+ C  C+  CP +A       +                +
Sbjct: 335 WYAWFLEKISLTGVRIDSQICVDCGACDRACPVEAAKDRLAGKK------------WPAE 382

Query: 103 CIYCGLCQEACPVDAIVEGPNF 124
           C  C  C   CPVDAI  GP +
Sbjct: 383 CFSCARCLRVCPVDAIDYGPRW 404


>gi|1770208|emb|CAA70873.1| pyruvate-ferredoxin oxidoreductase [Desulfovibrio africanus]
          Length = 1232

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 28/90 (31%), Gaps = 18/90 (20%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR----------------RTV 94
            A+       E CI C  C  +CP  AI                                
Sbjct: 677 VAINVPQWVPENCIQCNQCAFVCPHSAILPVLAKEEELVGAPANFTALEAKGKELKGYKF 736

Query: 95  RYDIDMIKCIYCGLCQEACP--VDAIVEGP 122
           R  I+ + C+ CG C + CP    A+V  P
Sbjct: 737 RIQINTLDCMGCGNCADICPPKEKALVMQP 766


>gi|4558091|pdb|1B0P|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
           From Desulfovibrio Africanus
 gi|4558092|pdb|1B0P|B Chain B, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
           From Desulfovibrio Africanus
 gi|4558221|pdb|2PDA|A Chain A, Crystal Structure Of The Complex Between Pyruvate-
           Ferredoxin Oxidoreductase From Desulfovibrio Africanus
           And Pyruvate.
 gi|4558222|pdb|2PDA|B Chain B, Crystal Structure Of The Complex Between Pyruvate-
           Ferredoxin Oxidoreductase From Desulfovibrio Africanus
           And Pyruvate.
 gi|18158649|pdb|1KEK|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
           Pyruvate:ferredoxin Oxidoreductase
 gi|18158650|pdb|1KEK|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
           Pyruvate:ferredoxin Oxidoreductase
 gi|90108955|pdb|2C3M|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
           From Desulfovibrio Africanus
 gi|90108956|pdb|2C3M|B Chain B, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
           From Desulfovibrio Africanus
 gi|90108957|pdb|2C3O|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
           Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
           Africanus
 gi|90108958|pdb|2C3O|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
           Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
           Africanus
 gi|90108959|pdb|2C3P|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
           Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
           Africanus
 gi|90108960|pdb|2C3P|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
           Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
           Africanus
 gi|90108961|pdb|2C3U|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
           From Desulfovibrio Africanus, Oxygen Inhibited Form
 gi|90108962|pdb|2C3U|B Chain B, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
           From Desulfovibrio Africanus, Oxygen Inhibited Form
 gi|90108963|pdb|2C3Y|A Chain A, Crystal Structure Of The Radical Form Of
           Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
           Africanus
 gi|90108964|pdb|2C3Y|B Chain B, Crystal Structure Of The Radical Form Of
           Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
           Africanus
 gi|122919639|pdb|2C42|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
           From Desulfovibrio Africanus
 gi|122919640|pdb|2C42|B Chain B, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase
           From Desulfovibrio Africanus
 gi|188595859|pdb|2UZA|A Chain A, Crystal Structure Of The Free Radical Intermediate Of
           Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
           Africanus
 gi|188595860|pdb|2UZA|B Chain B, Crystal Structure Of The Free Radical Intermediate Of
           Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio
           Africanus
          Length = 1231

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 28/90 (31%), Gaps = 18/90 (20%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR----------------RTV 94
            A+       E CI C  C  +CP  AI                                
Sbjct: 676 VAINVPQWVPENCIQCNQCAFVCPHSAILPVLAKEEELVGAPANFTALEAKGKELKGYKF 735

Query: 95  RYDIDMIKCIYCGLCQEACP--VDAIVEGP 122
           R  I+ + C+ CG C + CP    A+V  P
Sbjct: 736 RIQINTLDCMGCGNCADICPPKEKALVMQP 765


>gi|325971008|ref|YP_004247199.1| hypothetical protein SpiBuddy_1180 [Spirochaeta sp. Buddy]
 gi|324026246|gb|ADY13005.1| protein of unknown function DUF362 [Spirochaeta sp. Buddy]
          Length = 372

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 11/59 (18%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            + CI C+ C  ICPA A+T+E             R  ID   CI C  C E CP  AI
Sbjct: 317 PDPCIQCRKCIDICPANALTME-----------HKRIIIDPSVCIRCYCCHEVCPASAI 364


>gi|302333942|gb|ADL24135.1| molybdopterin oxidoreductase [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|323443733|gb|EGB01346.1| formate dehydrogenase alpha subunit [Staphylococcus aureus O46]
          Length = 984

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 13/96 (13%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P+EK               Y     +CI C  C   C    +             R +  
Sbjct: 131 PYEKDYGP----------FYRYDPNQCILCGRCVEACQDIEVNETIRIDWDREHPRVIWD 180

Query: 97  D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           +   I+   C+ CG C   CP +A++E      A  
Sbjct: 181 NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGY 216



 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 17/68 (25%), Gaps = 8/68 (11%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105
           R        C  C      CE      A                      Y  D  +CI 
Sbjct: 90  RILEKHMLYCTVCDYNNGDCEIHNTMDAWGLQHQTYEYKEKPYEKDYGPFYRYDPNQCIL 149

Query: 106 CGLCQEAC 113
           CG C EAC
Sbjct: 150 CGRCVEAC 157


>gi|293376714|ref|ZP_06622937.1| putative ferredoxin hydrogenase [Turicibacter sanguinis PC909]
 gi|325845179|ref|ZP_08168487.1| ferredoxin hydrogenase [Turicibacter sp. HGF1]
 gi|292644671|gb|EFF62758.1| putative ferredoxin hydrogenase [Turicibacter sanguinis PC909]
 gi|325488775|gb|EGC91176.1| ferredoxin hydrogenase [Turicibacter sp. HGF1]
          Length = 590

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 3/78 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIE-SGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115
              +CI C  C A C  +A     +  +    T     ++  M    CI+CG C  ACP 
Sbjct: 144 DTSKCILCGRCVAACREKAGVEVLAFNQRGFKTYIGPAFEACMDDAGCIHCGQCIAACPT 203

Query: 116 DAIVEGPNFEFATETRQE 133
            A+ E  N     E   +
Sbjct: 204 AALQEHSNINQVVEAIND 221


>gi|269139087|ref|YP_003295788.1| anaerobic sulfite reductase subunit C [Edwardsiella tarda EIB202]
 gi|267984748|gb|ACY84577.1| anaerobic sulfite reductase subunit C [Edwardsiella tarda EIB202]
 gi|304559016|gb|ADM41680.1| Anaerobic sulfite reductase subunit C [Edwardsiella tarda FL6-60]
          Length = 335

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 26/88 (29%), Gaps = 8/88 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +    +    G   + R     ERCI C  C   C   A+   S             
Sbjct: 153 CPNDCAKATMADLGILGVARIHFTPERCIGCGACVRACKHHAVDCLSLLNGKA------- 205

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                  CI CG C  ACP  A    P 
Sbjct: 206 -TKQESLCIGCGECVLACPTLAWQRRPE 232



 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/54 (20%), Positives = 14/54 (25%), Gaps = 1/54 (1%)

Query: 68  LCEAICPAQAI-TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
               +  A              G     R      +CI CG C  AC   A+  
Sbjct: 144 YHLKVVLAGCPNDCAKATMADLGILGVARIHFTPERCIGCGACVRACKHHAVDC 197


>gi|182412429|ref|YP_001817495.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing
           protein [Opitutus terrae PB90-1]
 gi|177839643|gb|ACB73895.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Opitutus terrae PB90-1]
          Length = 1211

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 31/114 (27%), Gaps = 25/114 (21%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR----------------RT 93
             AL         CI C  C  +CP  AI  +                          R 
Sbjct: 685 NIALEIPVWDPAICIQCNKCAMVCPHAAIRPKFFDPAELAKAPEGFQSVPFKSTEFAGRH 744

Query: 94  VRYDIDMIKCIYCGLCQEACPV--------DAIVEGPNFEFATETRQEL-YYDK 138
               +    C  C +C + CP          AI   P      + R++  ++ K
Sbjct: 745 YTLQVAAEDCTGCSICVQVCPAKDKTNPKHKAIDMTPQAPLLAKARRDWDFFTK 798


>gi|110801841|ref|YP_698262.1| periplasmic [Fe] hydrogenase 1 [Clostridium perfringens SM101]
 gi|110682342|gb|ABG85712.1| [Fe] hydrogenase [Clostridium perfringens SM101]
          Length = 696

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 13/88 (14%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              EE+CI C  C+ IC                   ++    D+  CI CG C   CP  
Sbjct: 21  CRDEEKCIKCGSCKNICTD---------YIGVNGHYSLEKTNDIAVCINCGQCANVCPTS 71

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNN 144
           +I E  ++    +  ++   DK++++  
Sbjct: 72  SITEVFDY----KKVEDAINDKDKIVIV 95


>gi|110803645|ref|YP_699341.1| pyruvate-flavodoxin oxidoreductase [Clostridium perfringens SM101]
 gi|110684146|gb|ABG87516.1| pyruvate-flavodoxin oxidoreductase [Clostridium perfringens SM101]
          Length = 1171

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 29/106 (27%), Gaps = 20/106 (18%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIES- 82
           FE G+ +   RG           + CI C  C  +CP                A      
Sbjct: 666 FEPGTAAYEKRGIGINIPEWI-ADNCIQCNQCAYVCPHATIRPFLLTEEEAKNAPASTKL 724

Query: 83  --GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP--VDAIVEGPNF 124
                            +  + C  CG C + CP    A+V  P  
Sbjct: 725 VAAKALKTEEPMQFTMAVSTLDCTGCGNCAQVCPAKEKALVMKPQH 770


>gi|83311764|ref|YP_422028.1| ferredoxin [Magnetospirillum magneticum AMB-1]
 gi|82946605|dbj|BAE51469.1| Ferredoxin [Magnetospirillum magneticum AMB-1]
          Length = 669

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 44/144 (30%), Gaps = 20/144 (13%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFK--AKTTINYPFEKGSTSPRFRGEHALRRYPNG 59
           R       FL L        L L +  +         P E G                  
Sbjct: 465 RPVEPAAEFLVLGGKRQTLGLALTHLHRHAPAPVAVLPLEAGDPFGTI---------AVD 515

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           + +C  C  C + CPA+A++                  I  + C+ CGLC+  CP  A+ 
Sbjct: 516 QAKCTLCMACVSACPAKALSGHPDKPSLG---------ILEVNCVQCGLCRVTCPEKAVS 566

Query: 120 EGPNFEFATETRQELYYDKERLLN 143
             P   F +E R      +E    
Sbjct: 567 LLPRLAFGSEARLRQVLKEEEPYE 590



 Score = 34.7 bits (78), Expect = 3.9,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 19/57 (33%), Gaps = 11/57 (19%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           +AC  C   CP+ A++ +      D              C   G C   CP  AI  
Sbjct: 283 VACTRCLDACPSGALSPQGDAAAVDAHV-----------CGGHGPCASVCPTGAIRF 328


>gi|15598687|ref|NP_252181.1| electron transport complex protein RnfC [Pseudomonas aeruginosa
           PAO1]
 gi|17369004|sp|Q9HYB8|RNFC_PSEAE RecName: Full=Electron transport complex protein rnfC
 gi|9949637|gb|AAG06879.1|AE004770_4 probable ferredoxin [Pseudomonas aeruginosa PAO1]
          Length = 774

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 10/97 (10%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            CI C  C  +CP   +  +       G         ++  CI CG C   CP  +I   
Sbjct: 368 PCIRCGDCAQVCPVS-LLPQQLHFFALGDEHEQLLAHNLFDCIECGACAYVCP-SSIPLV 425

Query: 122 PNFEFAT-ETRQELYYDKERLL---NNGDRWESEIVR 154
             +  +  E R++    +++LL    + +R+E    R
Sbjct: 426 QYYRASKAEIREQ----RQKLLKAEQSRERFEQRQAR 458



 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 17/54 (31%)

Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNI 156
           CI CG C + CPV  + +  +F                    GD  E  +  N+
Sbjct: 369 CIRCGDCAQVCPVSLLPQQLHF-----------------FALGDEHEQLLAHNL 405


>gi|333031460|ref|ZP_08459521.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Bacteroides
           coprosuis DSM 18011]
 gi|332742057|gb|EGJ72539.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Bacteroides
           coprosuis DSM 18011]
          Length = 1183

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 30/93 (32%), Gaps = 15/93 (16%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG  A     N  E CI C  C  +CP                A               T
Sbjct: 676 RGVAAFVPEWN-PENCIQCNKCAYVCPHASIRPFVLDEEEQKGANFPSLKAVGKQFNGMT 734

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
            R  +D++ C+ CG C + CP +    G   E 
Sbjct: 735 FRIQVDVLDCLGCGNCADVCPGNPRKGGKALEM 767


>gi|332295738|ref|YP_004437661.1| Glutamate synthase (NADPH) [Thermodesulfobium narugense DSM 14796]
 gi|332178841|gb|AEE14530.1| Glutamate synthase (NADPH) [Thermodesulfobium narugense DSM 14796]
          Length = 504

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 18/61 (29%), Gaps = 10/61 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E CI C  C   C   A+  +                    KC+ C  C   CP  AI
Sbjct: 16  DRELCIKCGQCVKNCGFSALMQDKDKNVKPIH----------EKCVACQRCMYVCPTKAI 65

Query: 119 V 119
            
Sbjct: 66  Q 66


>gi|311742320|ref|ZP_07716129.1| ferredoxin--NADP(+) reductase C-terminal domain protein
           [Aeromicrobium marinum DSM 15272]
 gi|311313948|gb|EFQ83856.1| ferredoxin--NADP(+) reductase C-terminal domain protein
           [Aeromicrobium marinum DSM 15272]
          Length = 559

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 22/77 (28%), Gaps = 6/77 (7%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                   C A   C   CP   I                   ID + C+ CG C  ACP
Sbjct: 1   MPHVVTRSCCADASCTFACPVNCIHPTPDEPD---FGTAEMLYIDPVSCVDCGACVRACP 57

Query: 115 VDAIVEGP---NFEFAT 128
           V AIV        E   
Sbjct: 58  VGAIVPHTKLGEHELPF 74


>gi|257423792|ref|ZP_05600221.1| formate dehydrogenase alpha subunit [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257426472|ref|ZP_05602874.1| formate dehydrogenase alpha subunit [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257429111|ref|ZP_05605498.1| formate dehydrogenase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257431757|ref|ZP_05608120.1| formate dehydrogenase alpha subunit [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257434717|ref|ZP_05610768.1| formate dehydrogenase alpha subunit [Staphylococcus aureus subsp.
           aureus M876]
 gi|282902216|ref|ZP_06310109.1| formate dehydrogenase, alpha subunit [Staphylococcus aureus subsp.
           aureus C160]
 gi|282906650|ref|ZP_06314498.1| formate dehydrogenase [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282909625|ref|ZP_06317434.1| formate dehydrogenase, alpha subunit [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282911870|ref|ZP_06319666.1| formate dehydrogenase, alpha subunit [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282915163|ref|ZP_06322940.1| formate dehydrogenase, alpha subunit [Staphylococcus aureus subsp.
           aureus M899]
 gi|282920889|ref|ZP_06328607.1| formate dehydrogenase [Staphylococcus aureus subsp. aureus C427]
 gi|282925795|ref|ZP_06333443.1| formate dehydrogenase [Staphylococcus aureus subsp. aureus C101]
 gi|283959090|ref|ZP_06376531.1| formate dehydrogenase, alpha subunit [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|293497563|ref|ZP_06665417.1| formate dehydrogenase [Staphylococcus aureus subsp. aureus 58-424]
 gi|293511140|ref|ZP_06669837.1| formate dehydrogenase [Staphylococcus aureus subsp. aureus M809]
 gi|293549747|ref|ZP_06672419.1| formate dehydrogenase, alpha subunit [Staphylococcus aureus subsp.
           aureus M1015]
 gi|297589619|ref|ZP_06948260.1| formate dehydrogenase alpha subunit [Staphylococcus aureus subsp.
           aureus MN8]
 gi|257272810|gb|EEV04912.1| formate dehydrogenase alpha subunit [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257276103|gb|EEV07554.1| formate dehydrogenase alpha subunit [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257279592|gb|EEV10179.1| formate dehydrogenase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257282636|gb|EEV12768.1| formate dehydrogenase alpha subunit [Staphylococcus aureus subsp.
           aureus E1410]
 gi|257285313|gb|EEV15429.1| formate dehydrogenase alpha subunit [Staphylococcus aureus subsp.
           aureus M876]
 gi|282312624|gb|EFB43028.1| formate dehydrogenase [Staphylococcus aureus subsp. aureus C101]
 gi|282315304|gb|EFB45688.1| formate dehydrogenase [Staphylococcus aureus subsp. aureus C427]
 gi|282320884|gb|EFB51218.1| formate dehydrogenase, alpha subunit [Staphylococcus aureus subsp.
           aureus M899]
 gi|282323566|gb|EFB53882.1| formate dehydrogenase, alpha subunit [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282326199|gb|EFB56503.1| formate dehydrogenase, alpha subunit [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282329549|gb|EFB59070.1| formate dehydrogenase [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282596675|gb|EFC01634.1| formate dehydrogenase, alpha subunit [Staphylococcus aureus subsp.
           aureus C160]
 gi|283788682|gb|EFC27509.1| formate dehydrogenase, alpha subunit [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|290918794|gb|EFD95870.1| formate dehydrogenase, alpha subunit [Staphylococcus aureus subsp.
           aureus M1015]
 gi|291096494|gb|EFE26752.1| formate dehydrogenase [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466127|gb|EFF08656.1| formate dehydrogenase [Staphylococcus aureus subsp. aureus M809]
 gi|297578130|gb|EFH96843.1| formate dehydrogenase alpha subunit [Staphylococcus aureus subsp.
           aureus MN8]
 gi|312437277|gb|ADQ76348.1| NAD-dependent formate dehydrogenase [Staphylococcus aureus subsp.
           aureus TCH60]
 gi|315193569|gb|EFU23965.1| putative bifunctional protein [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 984

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 13/96 (13%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P+EK               Y     +CI C  C   C    +             R +  
Sbjct: 131 PYEKDYGP----------FYRYDPNQCILCGRCVEACQDIEVNETIRIDWDREHPRVIWD 180

Query: 97  D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           +   I+   C+ CG C   CP +A++E      A  
Sbjct: 181 NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGY 216



 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 17/68 (25%), Gaps = 8/68 (11%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105
           R        C  C      CE      A                      Y  D  +CI 
Sbjct: 90  RILEKHMLYCTVCDYNNGDCEIHNTMDAWGLQHQTYEYKEKPYEKDYGPFYRYDPNQCIL 149

Query: 106 CGLCQEAC 113
           CG C EAC
Sbjct: 150 CGRCVEAC 157


>gi|254440924|ref|ZP_05054417.1| formate dehydrogenase, alpha subunit [Octadecabacter antarcticus
           307]
 gi|198251002|gb|EDY75317.1| formate dehydrogenase, alpha subunit [Octadecabacter antarcticus
           307]
          Length = 962

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 28/82 (34%), Gaps = 4/82 (4%)

Query: 55  RYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            +     +CI C  C   C       A+TIE        +      D     C+ CG C 
Sbjct: 175 YFTYDPAKCIVCSRCVRACEEVQGTFALTIEGMGFNSRVSAGAGGDDFMSSDCVSCGACV 234

Query: 111 EACPVDAIVEGPNFEFATETRQ 132
           +ACP   + E    E  T  R 
Sbjct: 235 QACPTATLQEKSVIEMGTPERS 256


>gi|315231077|ref|YP_004071513.1| indolepyruvate oxidoreductase subunit [Thermococcus barophilus MP]
 gi|315184105|gb|ADT84290.1| indolepyruvate oxidoreductase subunit [Thermococcus barophilus MP]
          Length = 645

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 10/78 (12%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           RGE  L  Y   E++C  CK+C       AI  ++  +            ++ + C  CG
Sbjct: 578 RGEKWLI-YTVNEDKCTGCKICINAYGCPAIYWDAEKKKA---------QVNPLMCWGCG 627

Query: 108 LCQEACPVDAIVEGPNFE 125
            C + CP  A       E
Sbjct: 628 GCAQVCPFGAFEVMKEGE 645


>gi|149926432|ref|ZP_01914693.1| putative iron-sulfur binding protein [Limnobacter sp. MED105]
 gi|149824795|gb|EDM84009.1| putative iron-sulfur binding protein [Limnobacter sp. MED105]
          Length = 704

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 9/79 (11%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +++C  C  C + CPA A+             R          C+ CGLC E CP +A+
Sbjct: 570 NKDKCTLCMSCTSACPASALIDNPEMPQLRFIERN---------CVQCGLCVETCPENAM 620

Query: 119 VEGPNFEFATETRQELYYD 137
              P        R++   +
Sbjct: 621 QLVPQLLLGPAAREKRVLN 639



 Score = 41.6 bits (96), Expect = 0.039,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 18/55 (32%), Gaps = 11/55 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           C  C   C  +AI                  +++   C+ CG C   CP  AI  
Sbjct: 328 CNSCIDACSTKAIKSAGEK-----------IEVNPHLCLGCGACTTVCPTGAIQF 371



 Score = 37.8 bits (86), Expect = 0.57,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           +DM  C  CG C +ACP  +I
Sbjct: 199 VDMEMCTRCGACVDACPTQSI 219


>gi|149378171|ref|ZP_01895888.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB
           [Marinobacter algicola DG893]
 gi|149357533|gb|EDM46038.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB
           [Marinobacter algicola DG893]
          Length = 192

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 28/82 (34%), Gaps = 10/82 (12%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E          E A R     E+ CI C  C   CP  AI   +             + +
Sbjct: 92  EPQPLDAEHGVEQAKRVAVIREDECIGCTKCIQACPVDAILGAAK----------HMHTV 141

Query: 99  DMIKCIYCGLCQEACPVDAIVE 120
              +C  C LC E CPVD I  
Sbjct: 142 IESECTGCDLCVEPCPVDCIDM 163


>gi|118431333|ref|NP_147723.2| putative ATPase RIL [Aeropyrum pernix K1]
 gi|116062656|dbj|BAA80104.2| ABCE1 homolog [Aeropyrum pernix K1]
          Length = 614

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 26/76 (34%), Gaps = 3/76 (3%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGP--RCHDGTRRTVRYDIDMIKCIYC 106
           G   LR      + C   K C   C A     +SG             +  I    CI C
Sbjct: 3   GGLRLRLAVIDYDSCKP-KKCSYECIAVCPVNKSGRGVAIDADMASRGKPVIYEDACIGC 61

Query: 107 GLCQEACPVDAIVEGP 122
            LC +ACP DAI    
Sbjct: 62  ALCVKACPFDAIYIVN 77


>gi|91773868|ref|YP_566560.1| hypothetical protein Mbur_1929 [Methanococcoides burtonii DSM 6242]
 gi|91712883|gb|ABE52810.1| Phosphoadenosine phosphosulfate reductase fused to RNA-binding PUA
           and 4Fe-4S binding domains [Methanococcoides burtonii
           DSM 6242]
          Length = 633

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 12/54 (22%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           +C+ C +C   CP   ITIE G              I   KCI+CG C E CPV
Sbjct: 588 KCMGCGVCVGKCPKNCITIEDGKA------------IISSKCIHCGACVEICPV 629



 Score = 35.5 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 14/33 (42%)

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
             R  R     +KC+ CG+C   CP + I    
Sbjct: 576 MTRIERAVRRSLKCMGCGVCVGKCPKNCITIED 608


>gi|256827263|ref|YP_003151222.1| 2-oxoacid:acceptor oxidoreductase, gamma subunit,
           pyruvate/2-ketoisovalerate family/2-oxoacid:acceptor
           oxidoreductase, delta subunit,
           pyruvate/2-ketoisovalerate family [Cryptobacterium
           curtum DSM 15641]
 gi|256583406|gb|ACU94540.1| 2-oxoacid:acceptor oxidoreductase, gamma subunit,
           pyruvate/2-ketoisovalerate family/2-oxoacid:acceptor
           oxidoreductase, delta subunit,
           pyruvate/2-ketoisovalerate family [Cryptobacterium
           curtum DSM 15641]
          Length = 355

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 8/65 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +RC  C  C   CP  AI               V   +D   C  C +C++ CP DAI
Sbjct: 261 DAQRCTGCLQCYLYCPDGAIKRTPSAA--------VVVSVDTEFCKGCAVCEQVCPFDAI 312

Query: 119 VEGPN 123
                
Sbjct: 313 SMVSE 317



 Score = 33.9 bits (76), Expect = 6.9,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 13/32 (40%)

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            R  R  +D  +C  C  C   CP  AI   P
Sbjct: 253 WRERRPVVDAQRCTGCLQCYLYCPDGAIKRTP 284


>gi|224023411|ref|ZP_03641777.1| hypothetical protein BACCOPRO_00110 [Bacteroides coprophilus DSM
           18228]
 gi|224016633|gb|EEF74645.1| hypothetical protein BACCOPRO_00110 [Bacteroides coprophilus DSM
           18228]
          Length = 400

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 12/62 (19%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++ C  C +C   C   AI     P            +ID+  C  CG C +ACP  A+
Sbjct: 12  NKDICTQCGICADSCTFGAIQFNEYP------------EIDINSCRLCGTCVQACPATAL 59

Query: 119 VE 120
             
Sbjct: 60  TM 61


>gi|222099662|ref|YP_002534230.1| NADH dehydrogenase [Thermotoga neapolitana DSM 4359]
 gi|221572052|gb|ACM22864.1| NADH dehydrogenase [Thermotoga neapolitana DSM 4359]
          Length = 610

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 10/66 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L  Y    E+C+ C  C  +CP Q I+ +              + ID  +C+ CG C E 
Sbjct: 541 LISYVIDPEKCVGCTACARVCPVQCISGQ----------VRQPHVIDQAECVRCGSCIEV 590

Query: 113 CPVDAI 118
           C   AI
Sbjct: 591 CRFGAI 596


>gi|206602055|gb|EDZ38537.1| NADH dehydrogenase (quinone) [Leptospirillum sp. Group II '5-way
           CG']
          Length = 617

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 10/66 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L +Y   EE C  C LCE +CP+ ++T E G   H          ID+  CI C  C +A
Sbjct: 561 LIKYVVIEEDCTTCGLCEPVCPSGSVTWEKGEVAH----------IDLTTCIRCKACVDA 610

Query: 113 CPVDAI 118
           C   AI
Sbjct: 611 CKFRAI 616



 Score = 33.5 bits (75), Expect = 9.1,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 15/42 (35%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            I             ++Y +    C  CGLC+  CP  ++  
Sbjct: 547 HIRDKRCPGTVCNDLIKYVVIEEDCTTCGLCEPVCPSGSVTW 588


>gi|146295664|ref|YP_001179435.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor saccharolyticus
           DSM 8903]
 gi|145409240|gb|ABP66244.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor saccharolyticus
           DSM 8903]
          Length = 584

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 37/98 (37%), Gaps = 15/98 (15%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
             LRY FK +   +   +K           AL  Y    E+C  C LC   CP +AIT E
Sbjct: 500 TTLRY-FKDEYIAHIRDKKCPAKQC----KALITYSILPEKCTGCGLCARKCPTKAITGE 554

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
                     R   + ID  KC  CG C   C   A+ 
Sbjct: 555 ----------RLKPHVIDQSKCTKCGTCMNVCRFGAVN 582


>gi|209525025|ref|ZP_03273569.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Arthrospira maxima CS-328]
 gi|209494434|gb|EDZ94745.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Arthrospira maxima CS-328]
          Length = 1192

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 41/146 (28%), Gaps = 36/146 (24%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPR 85
              TS   +   A        + C+ C  C  +CP                A        
Sbjct: 667 PTGTSKWEKRNVAQEIPVWDADVCVQCGKCIMVCPHAVIRGKAYDESALNGAPETFKTTA 726

Query: 86  CHDGTRRTVRYDID--MIKCIYCGLCQEACP--------VDAIVEGPNFEFATETRQ--E 133
             D      ++ I      C  CG+C + CP          AI            R+  E
Sbjct: 727 VRDKAFEGQKFTIQVSPEDCTGCGVCVDVCPAKNKSMPSKKAINMESQPPIRATERENWE 786

Query: 134 LYYDKERLLNNGDRWESEIVRNIVTD 159
            + +    L N DR      RN+ +D
Sbjct: 787 FFLN----LPNPDR------RNLRSD 802


>gi|160939851|ref|ZP_02087198.1| hypothetical protein CLOBOL_04742 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437285|gb|EDP15050.1| hypothetical protein CLOBOL_04742 [Clostridium bolteae ATCC
           BAA-613]
          Length = 357

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/125 (22%), Positives = 39/125 (31%), Gaps = 21/125 (16%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
              F   L+       +     E  +    F             ++CI C  C+  C   
Sbjct: 150 ATGFGGTLKNLGMGSGSRAGKMEMHNAGKPFV----------HTDKCIGCGACQRNCAHS 199

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
           AIT+                 ID  KC+ CG C  ACPVDA+    +       R+   Y
Sbjct: 200 AITVLERKAS-----------IDTSKCVGCGRCIGACPVDAVDSMCDEANDILNRKIAEY 248

Query: 137 DKERL 141
               L
Sbjct: 249 TLAVL 253


>gi|110801224|ref|YP_696741.1| pyruvate-flavodoxin oxidoreductase [Clostridium perfringens ATCC
           13124]
 gi|168205869|ref|ZP_02631874.1| pyruvate-flavodoxin oxidoreductase [Clostridium perfringens E str.
           JGS1987]
 gi|168208763|ref|ZP_02634388.1| pyruvate-flavodoxin oxidoreductase [Clostridium perfringens B str.
           ATCC 3626]
 gi|168212902|ref|ZP_02638527.1| pyruvate-flavodoxin oxidoreductase [Clostridium perfringens CPE
           str. F4969]
 gi|168215688|ref|ZP_02641313.1| pyruvate-flavodoxin oxidoreductase [Clostridium perfringens NCTC
           8239]
 gi|169343700|ref|ZP_02864699.1| pyruvate-flavodoxin oxidoreductase [Clostridium perfringens C str.
           JGS1495]
 gi|182623964|ref|ZP_02951752.1| pyruvate-flavodoxin oxidoreductase [Clostridium perfringens D str.
           JGS1721]
 gi|110675871|gb|ABG84858.1| pyruvate-flavodoxin oxidoreductase [Clostridium perfringens ATCC
           13124]
 gi|169298260|gb|EDS80350.1| pyruvate-flavodoxin oxidoreductase [Clostridium perfringens C str.
           JGS1495]
 gi|170662624|gb|EDT15307.1| pyruvate-flavodoxin oxidoreductase [Clostridium perfringens E str.
           JGS1987]
 gi|170713032|gb|EDT25214.1| pyruvate-flavodoxin oxidoreductase [Clostridium perfringens B str.
           ATCC 3626]
 gi|170715463|gb|EDT27645.1| pyruvate-flavodoxin oxidoreductase [Clostridium perfringens CPE
           str. F4969]
 gi|177910857|gb|EDT73211.1| pyruvate-flavodoxin oxidoreductase [Clostridium perfringens D str.
           JGS1721]
 gi|182382191|gb|EDT79670.1| pyruvate-flavodoxin oxidoreductase [Clostridium perfringens NCTC
           8239]
          Length = 1171

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 29/106 (27%), Gaps = 20/106 (18%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIES- 82
           FE G+ +   RG           + CI C  C  +CP                A      
Sbjct: 666 FEPGTAAYEKRGIGINIPEWI-ADNCIQCNQCAYVCPHATIRPFLLTEEEAKNAPASTKL 724

Query: 83  --GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP--VDAIVEGPNF 124
                            +  + C  CG C + CP    A+V  P  
Sbjct: 725 VAAKALKTEEPMQFTMAVSTLDCTGCGNCAQVCPAKEKALVMKPQH 770


>gi|18311043|ref|NP_562977.1| pyruvate-flavodoxin oxidoreductase [Clostridium perfringens str.
           13]
 gi|18145725|dbj|BAB81767.1| pyruvate ferredoxin oxidoreductase [Clostridium perfringens str.
           13]
          Length = 1171

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 29/106 (27%), Gaps = 20/106 (18%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIES- 82
           FE G+ +   RG           + CI C  C  +CP                A      
Sbjct: 666 FEPGTAAYEKRGIGINIPEWI-ADNCIQCNQCAYVCPHATIRPFLLTEEEAKNAPASTKL 724

Query: 83  --GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP--VDAIVEGPNF 124
                            +  + C  CG C + CP    A+V  P  
Sbjct: 725 VAAKALKTEEPMQFTMAVSTLDCTGCGNCAQVCPAKEKALVMKPQH 770


>gi|298695568|gb|ADI98790.1| formate dehydrogenase alpha subunit [Staphylococcus aureus subsp.
           aureus ED133]
          Length = 984

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 13/96 (13%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P+EK               Y     +CI C  C   C    +             R +  
Sbjct: 131 PYEKDYGP----------FYRYDPNQCILCGRCVEACQDIEVNETIRIDWDREHPRVIWD 180

Query: 97  D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           +   I+   C+ CG C   CP +A++E      A  
Sbjct: 181 NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGY 216



 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 17/68 (25%), Gaps = 8/68 (11%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105
           R        C  C      CE      A                      Y  D  +CI 
Sbjct: 90  RILEKHMLYCTVCDYNNGDCEIHNTMDAWGLQHQTYEYKEKPYEKDYGPFYRYDPNQCIL 149

Query: 106 CGLCQEAC 113
           CG C EAC
Sbjct: 150 CGRCVEAC 157


>gi|283785157|ref|YP_003365022.1| electron transport complex protein [Citrobacter rodentium ICC168]
 gi|282948611|emb|CBG88202.1| electron transport complex protein [Citrobacter rodentium ICC168]
          Length = 192

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 25/76 (32%), Gaps = 10/76 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   +             + +    C  C LC + CP   I
Sbjct: 113 DEANCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTQCI 162

Query: 119 VEGPNFEFATETRQEL 134
              P  +     + +L
Sbjct: 163 TLRPVADTPDTWKWDL 178



 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C  C +ACPVDAI
Sbjct: 112 IDEANCIGCTKCIQACPVDAI 132


>gi|241759531|ref|ZP_04757634.1| ferredoxin, 4Fe-4S bacterial type [Neisseria flavescens SK114]
 gi|241320088|gb|EER56449.1| ferredoxin, 4Fe-4S bacterial type [Neisseria flavescens SK114]
          Length = 283

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   S           + + +   +C  CGLC   CPVD I
Sbjct: 77  DEAICIGCTACIRACPVDAIMGASK----------LMHTVISDECTGCGLCVTPCPVDCI 126

Query: 119 VEGP 122
              P
Sbjct: 127 DMVP 130



 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/22 (59%), Positives = 14/22 (63%)

Query: 98  IDMIKCIYCGLCQEACPVDAIV 119
           ID   CI C  C  ACPVDAI+
Sbjct: 76  IDEAICIGCTACIRACPVDAIM 97


>gi|227822747|ref|YP_002826719.1| NADH-quinone oxidoreductase chain G 1 [Sinorhizobium fredii NGR234]
 gi|227341748|gb|ACP25966.1| NADH-quinone oxidoreductase chain G 1 [Sinorhizobium fredii NGR234]
          Length = 870

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 3/80 (3%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           +   S   R    +    N   RCI C+ C  +C      +  G            ++  
Sbjct: 128 RVFHSRDIRLSPVIIMNVN---RCIQCQRCVRMCEEVVGAVALGTVEKGMDTAVTGFEGS 184

Query: 100 MIKCIYCGLCQEACPVDAIV 119
           +  C  CG C + CPV A++
Sbjct: 185 LASCDQCGNCVQVCPVGALM 204


>gi|224370160|ref|YP_002604324.1| putative fusion protein, heterodisulfide reductase (HdrA) /
           F420-non-reducing hydrogenase (MvhD) [Desulfobacterium
           autotrophicum HRM2]
 gi|223692877|gb|ACN16160.1| putative fusion protein, heterodisulfide reductase (HdrA) /
           F420-non-reducing hydrogenase (MvhD) [Desulfobacterium
           autotrophicum HRM2]
          Length = 511

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 11/63 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            + +C+ C  C   CP  AI  E+G              I  + C  CG+C   CP+DAI
Sbjct: 318 DDTKCVICLTCYRCCPHGAIFWENGVAA-----------ISPVACQGCGICASECPMDAI 366

Query: 119 VEG 121
             G
Sbjct: 367 QIG 369


>gi|21227956|ref|NP_633878.1| flavoprotein [Methanosarcina mazei Go1]
 gi|20906380|gb|AAM31550.1| Archaeal flavoprotein [Methanosarcina mazei Go1]
          Length = 239

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
             Y    ++C  C+ C           E+ P      +  V   ID++KC  CG+C+E C
Sbjct: 144 MPYNIDRKQCKHCETC--------PPRENCPHEAISEKNGVTDQIDLLKCKGCGICKELC 195

Query: 114 PVDAIVEGP 122
           P +AI  GP
Sbjct: 196 PYNAIKGGP 204


>gi|299134802|ref|ZP_07027994.1| formate dehydrogenase, alpha subunit [Afipia sp. 1NLS2]
 gi|298590612|gb|EFI50815.1| formate dehydrogenase, alpha subunit [Afipia sp. 1NLS2]
          Length = 922

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 3/87 (3%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC---PAQAITIESGPRCHDGTRRTV 94
             +   + R+ G+H+        + CI C LC   C       +   +            
Sbjct: 122 ESRFPAAERWSGDHSHPAMSVNLDACIQCGLCVRACREVQVNDVIGMAYRNHDAKIVFDF 181

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEG 121
              +    C+ CG C +ACP  A++  
Sbjct: 182 DDPMGESTCVACGECVQACPTGALMPS 208


>gi|298384458|ref|ZP_06994018.1| hydrogenase [Bacteroides sp. 1_1_14]
 gi|298262737|gb|EFI05601.1| hydrogenase [Bacteroides sp. 1_1_14]
          Length = 588

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 5/89 (5%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVR 95
           PF  G  SP  R            ++CI C+ CE++C   Q +      R    T     
Sbjct: 131 PFNGGELSP--RKREVTSSIVRNMDKCIFCRRCESVCNDVQTVGALGAIRRGFNTTIAPA 188

Query: 96  YDIDM--IKCIYCGLCQEACPVDAIVEGP 122
           +D  M   +C YCG C   CPV A+ E  
Sbjct: 189 FDRMMKDSECTYCGQCVAVCPVGALTERD 217



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 5/67 (7%)

Query: 52  ALRRYPNGEERCIACKLCEAICPA-----QAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
            L  +PN    C  C  CE    A     + +    G         T     +M KCI+C
Sbjct: 99  ILSDHPNDCLTCPKCGNCELQTLALRFNIREMPFNGGELSPRKREVTSSIVRNMDKCIFC 158

Query: 107 GLCQEAC 113
             C+  C
Sbjct: 159 RRCESVC 165


>gi|253682010|ref|ZP_04862807.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium
           botulinum D str. 1873]
 gi|253561722|gb|EES91174.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium
           botulinum D str. 1873]
          Length = 1168

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/112 (22%), Positives = 40/112 (35%), Gaps = 21/112 (18%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTV 94
            A+       E CI C  C  +CP   I                      +   G +   
Sbjct: 676 IAISVPEWSMENCIQCNQCSYVCPHAVIRPSLLTEEEYNNKPEGFKAIEAKGLKGEKLYY 735

Query: 95  RYDIDMIKCIYCGLCQEAC--PVDAIVEGPNFEFATETRQELYYDKERLLNN 144
             ++ ++ C  CG C E C  P  A+V  P    AT+ +++  YD  + L+ 
Sbjct: 736 SMNVSVLDCTGCGNCAEVCPAPTKALVMKP---AATQEKEQANYDYAQTLSV 784


>gi|158340895|ref|YP_001522063.1| pyruvate-flavodoxin oxidoreductase [Acaryochloris marina MBIC11017]
 gi|158311136|gb|ABW32749.1| pyruvate-flavodoxin oxidoreductase [Acaryochloris marina MBIC11017]
          Length = 1207

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 16/73 (21%)

Query: 58  NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRYDID--MI 101
              E CI C  C  +CP               +A T        D     +++ I     
Sbjct: 690 WDPEVCIQCGKCVMVCPHSVIRSKVYDPEHTEKAPTTFKSTAARDHAWSDLKFSIQVAPE 749

Query: 102 KCIYCGLCQEACP 114
            C  CG+C + CP
Sbjct: 750 DCTGCGICVDVCP 762



 Score = 35.5 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 8/19 (42%)

Query: 100 MIKCIYCGLCQEACPVDAI 118
              CI CG C   CP   I
Sbjct: 692 PEVCIQCGKCVMVCPHSVI 710


>gi|83855221|ref|ZP_00948751.1| iron-sulfur cluster-binding protein [Sulfitobacter sp. NAS-14.1]
 gi|83843064|gb|EAP82231.1| iron-sulfur cluster-binding protein [Sulfitobacter sp. NAS-14.1]
          Length = 650

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 32/106 (30%), Gaps = 14/106 (13%)

Query: 36  YPFEK-GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            P  K             L       + C  C  C ++CP+ A+                
Sbjct: 478 QPEAKVIDLPDAAPYGAVLV----DTDACTLCLSCVSLCPSGALGDNPD---------LP 524

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140
           +       C+ CGLC   CP +AI   P      +   ++   +E 
Sbjct: 525 QLRFQEDACLQCGLCANVCPENAITLKPQLNLTAQAFTQVVLHEEE 570



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 11/53 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C  +CP  AIT                  ID + C  CG C   CP  AI
Sbjct: 279 CSNCLDLCPTGAITSAGE-----------HVAIDPMICAGCGSCSAVCPSGAI 320


>gi|302184712|ref|ZP_07261385.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas
           syringae pv. syringae 642]
          Length = 291

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 10/75 (13%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           RG    +     E  CI C  C   CP  AI   +           + + + + +C  C 
Sbjct: 76  RGTAPAQVAFIREAECIGCTKCIQACPVDAILGAAK----------LMHTVIIDECTGCD 125

Query: 108 LCQEACPVDAIVEGP 122
           LC   CPVD I   P
Sbjct: 126 LCIAPCPVDCIEMHP 140


>gi|300716527|ref|YP_003741330.1| Electron transport complex protein [Erwinia billingiae Eb661]
 gi|299062363|emb|CAX59480.1| Electron transport complex protein [Erwinia billingiae Eb661]
          Length = 191

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 28/96 (29%), Gaps = 10/96 (10%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E          E   +     EE CI C  C   CP  AI   +             + +
Sbjct: 92  EPQPLGDEAVLEPERKVAWIDEENCIGCTKCIQACPVDAIVGAT----------RAMHTV 141

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134
               C  C LC   CP D I   P        + +L
Sbjct: 142 LSDVCTGCDLCVAPCPTDCIEMRPVAPTTASWKWDL 177


>gi|254433139|ref|ZP_05046647.1| electron transport complex, RnfABCDGE type, C subunit subfamily
           [Nitrosococcus oceani AFC27]
 gi|207089472|gb|EDZ66743.1| electron transport complex, RnfABCDGE type, C subunit subfamily
           [Nitrosococcus oceani AFC27]
          Length = 491

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 30/104 (28%), Gaps = 4/104 (3%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            CI C  C   CP   +  +               D  +  CI CG C   CP   I   
Sbjct: 344 PCIRCGACVEACPVG-LLPQQLYWHARAKELDKTQDYHLFDCIECGCCAYVCPSH-IPLV 401

Query: 122 PNFEFATETR--QELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
             + +A      QE   +K  L      +  + +         R
Sbjct: 402 QYYRYAKSEIWTQEQEREKADLARQRHEFRQQRLAREQQQKAAR 445


>gi|167751835|ref|ZP_02423962.1| hypothetical protein ALIPUT_00077 [Alistipes putredinis DSM 17216]
 gi|167660076|gb|EDS04206.1| hypothetical protein ALIPUT_00077 [Alistipes putredinis DSM 17216]
          Length = 1180

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 28/92 (30%), Gaps = 15/92 (16%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQ-------------AITIESGPRCHDGTRR 92
             +   A+       ++CI C  C  +CP               A   E      D    
Sbjct: 681 WEKRGIAVNVPEWQVDKCIQCNQCAYVCPHAVIRPFLATETEAAASGTEWKQGLGDTKEY 740

Query: 93  TVRYDIDMIKCIYCGLCQEACP--VDAIVEGP 122
             R  I  + C  C  C + CP    A++  P
Sbjct: 741 KFRIQISPLDCTGCSNCVDVCPAKEKALIMKP 772


>gi|124515811|gb|EAY57320.1| NADH dehydrogenase (quinone) [Leptospirillum rubarum]
          Length = 617

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 10/66 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L +Y   EE C  C LCE +CP+ ++T E G   H          ID+  CI C  C +A
Sbjct: 561 LIKYVVIEEDCTTCGLCEPVCPSGSVTWEKGEVAH----------IDLTTCIRCKACVDA 610

Query: 113 CPVDAI 118
           C   AI
Sbjct: 611 CKFRAI 616



 Score = 33.5 bits (75), Expect = 9.3,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 15/42 (35%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            I             ++Y +    C  CGLC+  CP  ++  
Sbjct: 547 HIRDKRCPGTVCNDLIKYVVIEEDCTTCGLCEPVCPSGSVTW 588


>gi|15898855|ref|NP_343460.1| indolepyruvate ferredoxin oxidoreductase alpha subunit (iorA)
           [Sulfolobus solfataricus P2]
 gi|284174241|ref|ZP_06388210.1| indolepyruvate ferredoxin oxidoreductase alpha subunit (iorA)
           [Sulfolobus solfataricus 98/2]
 gi|13815352|gb|AAK42250.1| Indolepyruvate ferredoxin oxidoreductase alpha subunit (iorA)
           [Sulfolobus solfataricus P2]
 gi|261603266|gb|ACX92869.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Sulfolobus
           solfataricus 98/2]
          Length = 612

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 23/68 (33%), Gaps = 10/68 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L +     E+C  C +C       AI   +  +            ID   CI CG C   
Sbjct: 541 LPKAIVDLEKCTGCSICYDYFTCPAIIPRNDKKAE----------IDNYTCIGCGACVPI 590

Query: 113 CPVDAIVE 120
           CP  AI  
Sbjct: 591 CPFKAISL 598


>gi|49484525|ref|YP_041749.1| bifunctional protein [Staphylococcus aureus subsp. aureus MRSA252]
 gi|295428891|ref|ZP_06821515.1| formate dehydrogenase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|81650533|sp|Q6GEC4|FDHL_STAAR RecName: Full=Putative formate dehydrogenase SAR2393
 gi|49242654|emb|CAG41375.1| putative bifunctional protein [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|295127240|gb|EFG56882.1| formate dehydrogenase [Staphylococcus aureus subsp. aureus EMRSA16]
          Length = 984

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 13/96 (13%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P+EK               Y     +CI C  C   C    +             R +  
Sbjct: 131 PYEKDYGP----------FYRYDPNQCILCGRCVEACQDIELNETIRIDWDREHPRVIWD 180

Query: 97  D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           +   I+   C+ CG C   CP +A++E      A  
Sbjct: 181 NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGY 216



 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 17/68 (25%), Gaps = 8/68 (11%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105
           R        C  C      CE      A                      Y  D  +CI 
Sbjct: 90  RILEKHMLYCTVCDYNNGDCEIHNTMDAWGLQHQTYEYKEKPYEKDYGPFYRYDPNQCIL 149

Query: 106 CGLCQEAC 113
           CG C EAC
Sbjct: 150 CGRCVEAC 157


>gi|296133064|ref|YP_003640311.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola
           sp. JR]
 gi|296031642|gb|ADG82410.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola
           potens JR]
          Length = 368

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 11/60 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++CI C  C   CPA AIT+                 I   KCI CG C   CP  AI
Sbjct: 191 DADKCIGCTKCTHWCPADAITVNE-----------KVARISEEKCIGCGECTVTCPAHAI 239


>gi|253577979|ref|ZP_04855251.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850297|gb|EES78255.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 1178

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 26/81 (32%), Gaps = 15/81 (18%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQ-----AITIESGPRCHDGTR---------RT 93
           RG        N  E CI C  C  +CP       A+T E      +G +           
Sbjct: 680 RGIAVNVPVWN-PENCIQCNRCAYVCPHAVIRPVALTAEEAANAPEGMKTLDLTGMKEYK 738

Query: 94  VRYDIDMIKCIYCGLCQEACP 114
               +  + C  CG C   CP
Sbjct: 739 FTMSVSALDCTGCGSCVNVCP 759


>gi|163735778|ref|ZP_02143207.1| dihydropyrimidine dehydrogenase [Roseobacter litoralis Och 149]
 gi|161390864|gb|EDQ15204.1| dihydropyrimidine dehydrogenase [Roseobacter litoralis Och 149]
          Length = 434

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 8/95 (8%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    +  CI+C  C A C       E              + +   +C+ 
Sbjct: 330 QYLNLNYIAKAQINQADCISCGRCYAAC-------EDTSHQAIAMSEDRVFSVIDEECVA 382

Query: 106 CGLCQEACPV-DAIVEGPNFEFATETRQELYYDKE 139
           C LC E CPV + I   P  +   + R     +K+
Sbjct: 383 CNLCVEVCPVENCITMVPMEQGKVDPRTGKVVEKD 417


>gi|118589442|ref|ZP_01546848.1| formate dehydrogenase alpha subunit [Stappia aggregata IAM 12614]
 gi|118438142|gb|EAV44777.1| formate dehydrogenase alpha subunit [Stappia aggregata IAM 12614]
          Length = 922

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 5/78 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114
             + CIAC LCE  C  +    +       G+     +D    + +  C+ CG C  ACP
Sbjct: 143 NLDACIACNLCERACR-EVQVNDVIGMADRGSHTVPVFDLADPMGLSTCVACGECVSACP 201

Query: 115 VDAIVEGPNFEFATETRQ 132
             A++E    +     R+
Sbjct: 202 TGALMEKSLLDATASKRE 219


>gi|288572803|ref|ZP_06391160.1| molybdopterin oxidoreductase [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288568544|gb|EFC90101.1| molybdopterin oxidoreductase [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 1075

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI--ESGPRCHDGTRRTVRYD-IDMIKCIYCGLCQE 111
            Y    ++CI C  C   C   A     +   R    T     +  ID   C +CGLC +
Sbjct: 604 FYVRNMDKCILCGQCVRTCDEIAGFHAIDFAKRGFASTISPEYFKGIDASDCTFCGLCVQ 663

Query: 112 ACPVDAIVE 120
            CPV A+VE
Sbjct: 664 NCPVGALVE 672



 Score = 35.1 bits (79), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 9/64 (14%)

Query: 59  GEERCIACKL-----CEAICPAQAITIESGPRCHDGTR----RTVRYDIDMIKCIYCGLC 109
              RC+ C       C+    A    ++      +  +        Y  +M KCI CG C
Sbjct: 559 DASRCMECGCPDVFECKLRRYAIDYEVDPERVAGEHGKGIEEANEFYVRNMDKCILCGQC 618

Query: 110 QEAC 113
              C
Sbjct: 619 VRTC 622


>gi|227825061|ref|ZP_03989893.1| hydrogenase large subunit [Acidaminococcus sp. D21]
 gi|226905560|gb|EEH91478.1| hydrogenase large subunit [Acidaminococcus sp. D21]
          Length = 501

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 6/70 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY------DIDMIKCIYCGLCQ 110
               + C+ C  C+  CP  A+   S P  +      +        +ID   C+ CG C+
Sbjct: 136 HIDYDVCVECGNCKRACPYGAVVEISRPCENACKVHALHMGADKKAEIDKNVCVECGACR 195

Query: 111 EACPVDAIVE 120
            ACP  AI E
Sbjct: 196 GACPFGAIEE 205



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 8/86 (9%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERC-----IACKLCEAICPAQAITIESGPRCHDGTRRTV 94
           K  + P  R +H +   P G   C     +   +C      + +                
Sbjct: 77  KAVSEPVDRTQHVIAVLPEGCSACPVNKYMITDVCRRCLTHRCMNGCPKKAISV---YQG 133

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVE 120
           R  ID   C+ CG C+ ACP  A+VE
Sbjct: 134 RAHIDYDVCVECGNCKRACPYGAVVE 159


>gi|254302984|ref|ZP_04970342.1| pyruvate synthase [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
 gi|148323176|gb|EDK88426.1| pyruvate synthase [Fusobacterium nucleatum subsp. polymorphum ATCC
           10953]
          Length = 1191

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/133 (22%), Positives = 47/133 (35%), Gaps = 23/133 (17%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI----------------E 81
           FE G+++   RG           ++CI C  C  +CP  AI                   
Sbjct: 676 FENGTSAFEKRGVAVDVPIW-DVDKCIQCNQCSYVCPHAAIRPFLINEDELKASPEPLAT 734

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD--AIVEGPNFEFATETRQELYYDKE 139
             P          R  +  + C+ CG C   CP    A+V  P  E + E  +++   K 
Sbjct: 735 KKPVGKGLDGLAYRIQVSALDCVGCGSCAHVCPAPGKALVMRPIAE-SLEAHEDV---KT 790

Query: 140 RLLNNGDRWESEI 152
             L N   + S++
Sbjct: 791 DYLYNNVDYRSDL 803


>gi|158521464|ref|YP_001529334.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing
           protein [Desulfococcus oleovorans Hxd3]
 gi|158510290|gb|ABW67257.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Desulfococcus oleovorans Hxd3]
          Length = 1177

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 42/145 (28%), Gaps = 33/145 (22%)

Query: 29  KAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI-------- 78
           K   +   P        +   +   A++      E CI C  C  +CP  AI        
Sbjct: 650 KLPVSAFSPDGIFPVGTTQYEKRGIAIKVPQWVPENCIQCNQCALVCPHAAIRPALLTEK 709

Query: 79  --------TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP--VDAIVEGP------ 122
                         +         R  ++ + C+ CG C   CP    A+V  P      
Sbjct: 710 ELKKAPEAFTTIEAKGKGLEGYAFRIQVNTLDCMGCGSCAAVCPAKTPALVMQPLATQTD 769

Query: 123 -NFEFATET-----RQELYYDKERL 141
              E          R +L  D+E L
Sbjct: 770 TEVENHKYALTLPIRDDL-LDRESL 793


>gi|74318486|ref|YP_316226.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Thiobacillus
           denitrificans ATCC 25259]
 gi|74057981|gb|AAZ98421.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Thiobacillus
           denitrificans ATCC 25259]
          Length = 1207

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 30/112 (26%), Gaps = 25/112 (22%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQA-----------------ITIESGPRCHDGTRR 92
             AL       + C  C  C  +CP  A                     +          
Sbjct: 699 NIALEIPVWEPDLCTQCGKCVFVCPHTAIRARAFPAEAAADAPPAFKHVAAKSKELPAGT 758

Query: 93  TVRYDIDMIKCIYCGLCQEACPVD--------AIVEGPNFEFATETRQELYY 136
            V Y +    C  CG C EACP+         A+   P      + R  L +
Sbjct: 759 RVSYQVAAEDCTGCGDCVEACPIHDKSNIGRRAVNMAPVGPLREQERDNLAF 810


>gi|16760455|ref|NP_456072.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29141785|ref|NP_805127.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56413573|ref|YP_150648.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62180046|ref|YP_216463.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|167551571|ref|ZP_02345325.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|168229833|ref|ZP_02654891.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|168235531|ref|ZP_02660589.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|168819209|ref|ZP_02831209.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|194470589|ref|ZP_03076573.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194738361|ref|YP_002114471.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197250299|ref|YP_002146587.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197362497|ref|YP_002142134.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|200390591|ref|ZP_03217202.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204927482|ref|ZP_03218683.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205352829|ref|YP_002226630.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207857038|ref|YP_002243689.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|213051628|ref|ZP_03344506.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213418458|ref|ZP_03351524.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
 gi|213425980|ref|ZP_03358730.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213609896|ref|ZP_03369722.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
 gi|213649167|ref|ZP_03379220.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213855036|ref|ZP_03383276.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|224584033|ref|YP_002637831.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238911690|ref|ZP_04655527.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|289824890|ref|ZP_06544311.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|24638184|sp|Q8Z6R0|RNFB_SALTI RecName: Full=Electron transport complex protein rnfB
 gi|75505763|sp|Q57PH9|RNFB_SALCH RecName: Full=Electron transport complex protein rnfB
 gi|81677938|sp|Q5PIC0|RNFB_SALPA RecName: Full=Electron transport complex protein rnfB
 gi|226735425|sp|B5F6I9|RNFB_SALA4 RecName: Full=Electron transport complex protein rnfB
 gi|226735427|sp|B5QV01|RNFB_SALEP RecName: Full=Electron transport complex protein rnfB
 gi|226735428|sp|B5RAK1|RNFB_SALG2 RecName: Full=Electron transport complex protein rnfB
 gi|226735431|sp|B5BKB1|RNFB_SALPK RecName: Full=Electron transport complex protein rnfB
 gi|226735432|sp|B4TV18|RNFB_SALSV RecName: Full=Electron transport complex protein rnfB
 gi|254807926|sp|C0Q507|RNFB_SALPC RecName: Full=Electron transport complex protein rnfB
 gi|25316774|pir||AD0692 probable ferredoxin-like protein, cytoplasmic membrane STY1664
           [imported] - Salmonella enterica subsp. enterica serovar
           Typhi (strain CT18)
 gi|16502751|emb|CAD01909.1| putative ferredoxin-like protein, cytoplasmic membrane [Salmonella
           enterica subsp. enterica serovar Typhi]
 gi|29137413|gb|AAO68976.1| putative ferredoxin-like protein, cytoplasmic membrane [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|56127830|gb|AAV77336.1| putative ferredoxin-like protein, cytoplasmic membrane [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|62127679|gb|AAX65382.1| putative alternative beta subunit of Na+-transporting
           NADH:ubiquinone oxidoreductase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|194456953|gb|EDX45792.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194713863|gb|ACF93084.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197093974|emb|CAR59470.1| putative ferredoxin-like protein, cytoplasmic membrane [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|197214002|gb|ACH51399.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197290969|gb|EDY30322.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|199603036|gb|EDZ01582.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|204322824|gb|EDZ08020.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|205272610|emb|CAR37519.1| putative electron transport complex protein [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205323557|gb|EDZ11396.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205335259|gb|EDZ22023.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|205343637|gb|EDZ30401.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|206708841|emb|CAR33171.1| Electron transport complex protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224468560|gb|ACN46390.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|320086066|emb|CBY95840.1| Electron transport complex protein rnfB [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|322616075|gb|EFY12991.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322620524|gb|EFY17386.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322622925|gb|EFY19767.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322628768|gb|EFY25553.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322631478|gb|EFY28236.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322638813|gb|EFY35508.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322641120|gb|EFY37763.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322646613|gb|EFY43121.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650863|gb|EFY47254.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322654537|gb|EFY50858.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322658696|gb|EFY54954.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322665218|gb|EFY61406.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667963|gb|EFY64123.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671625|gb|EFY67746.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322677329|gb|EFY73393.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322680008|gb|EFY76047.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322685563|gb|EFY81559.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|322714516|gb|EFZ06087.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323194066|gb|EFZ79265.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323198189|gb|EFZ83298.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323202875|gb|EFZ87910.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323205624|gb|EFZ90587.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323211027|gb|EFZ95886.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323217294|gb|EGA02014.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221948|gb|EGA06339.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323232169|gb|EGA16275.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323234340|gb|EGA18427.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323237791|gb|EGA21850.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323242645|gb|EGA26666.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323247768|gb|EGA31708.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323254487|gb|EGA38299.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323254811|gb|EGA38609.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323266728|gb|EGA50215.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323268766|gb|EGA52225.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326627900|gb|EGE34243.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 192

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   +             + +    C  C LC + CP   I
Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTHCI 162

Query: 119 VEGPNFEFATETRQEL 134
              P  E     + +L
Sbjct: 163 ELRPVNETPDSWKWDL 178



 Score = 35.5 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C  C +ACPVDAI
Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132


>gi|148263283|ref|YP_001229989.1| electron transfer flavoprotein, alpha subunit [Geobacter
           uraniireducens Rf4]
 gi|146396783|gb|ABQ25416.1| electron transfer flavoprotein, alpha subunit [Geobacter
           uraniireducens Rf4]
          Length = 441

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 31/84 (36%), Gaps = 16/84 (19%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACK-LCEAICPAQAITIESGPRCHDGTRRTVRY 96
            E      + RG+  L        +CIAC   C++ CP  AI +                
Sbjct: 3   DEAKKPLKKPRGKACLI-----AGKCIACGARCQSACPVDAIEMNDAGEP---------- 47

Query: 97  DIDMIKCIYCGLCQEACPVDAIVE 120
            I+  KCI C  C + CP  AI  
Sbjct: 48  IINESKCIGCVKCVKVCPAQAIEM 71



 Score = 35.1 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%)

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGL-CQEACPVDAIVEGP 122
            +        +   +  +   KCI CG  CQ ACPVDAI    
Sbjct: 1   MTDEAKKPLKKPRGKACLIAGKCIACGARCQSACPVDAIEMND 43


>gi|114563345|ref|YP_750858.1| electron transport complex protein RnfC [Shewanella frigidimarina
           NCIMB 400]
 gi|114334638|gb|ABI72020.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella
           frigidimarina NCIMB 400]
          Length = 846

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 39/109 (35%), Gaps = 11/109 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114
            E+ CI C  C   CPA        P+      +   YD     ++  CI CG C   CP
Sbjct: 375 DEKACIRCGECAVACPA-----LLLPQQLFWHAKAEEYDKAASFNLKDCIECGCCSYVCP 429

Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
              I     +  A    +    +K +      R+E+ + + +  +   R
Sbjct: 430 -SDIPLVEYYRVAKSALKNAAEEKLQAEQAKIRFETRL-QRLEDEKNAR 476


>gi|325473842|gb|EGC77030.1| Fe-hydrogenase large subunit family protein [Treponema denticola
           F0402]
          Length = 500

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112
            EE+CI C +C   CP  A+     P         +  D      ID  KCI+CG C   
Sbjct: 153 DEEKCINCGICLKNCPYHAVIKIPVPCEEACPVGAISKDENGKERIDYHKCIFCGNCMRE 212

Query: 113 CPVDAIV 119
           CP  A++
Sbjct: 213 CPFGAMM 219



 Score = 38.5 bits (88), Expect = 0.29,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 5/80 (6%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV-----RYDIDMIK 102
           R +         +E C AC   + +         + P   +  +  +     R  ID  K
Sbjct: 97  REKPTWPMLTVLDEACNACVKSKYMITNACQACVARPCMMNCPKTAIAISGGRSRIDEEK 156

Query: 103 CIYCGLCQEACPVDAIVEGP 122
           CI CG+C + CP  A+++ P
Sbjct: 157 CINCGICLKNCPYHAVIKIP 176


>gi|220903579|ref|YP_002478891.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing
           protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219867878|gb|ACL48213.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
          Length = 1178

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 45/141 (31%), Gaps = 26/141 (18%)

Query: 29  KAKTTINYP--FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA----------- 75
           K   +   P  F    T+   +   A+       E CI C  C  +CP            
Sbjct: 651 KLPVSAMDPAGFMPLGTAACEKRGVAIAIPEWQVENCIQCCQCSFVCPHAAIRPVLATEE 710

Query: 76  ---QAITIESGPRCHDGTRRTVRYDI--DMIKCIYCGLCQEACPV--DAIVEGPNFEFAT 128
               A    +         + +++ I      C+ CG C + CP    A+V  P      
Sbjct: 711 ELEGAPAAFATKDAMGKELKGLKFRIQVYPEDCLGCGSCADVCPAKNKALVMKPLETQMD 770

Query: 129 ETRQELYYD------KERLLN 143
           + +  L +       K++LL 
Sbjct: 771 DQKANLAFAEAHVSLKDKLLA 791


>gi|119720693|ref|YP_921188.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermofilum pendens Hrk 5]
 gi|119525813|gb|ABL79185.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermofilum
           pendens Hrk 5]
          Length = 229

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 7/64 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +++CI C  C ++C + A  I          +   + ++D  KC+ CG C + CPV A+
Sbjct: 159 DKDKCIGCGACVSVCASIAGAI-------KWRKSGRKVEVDAAKCLGCGACVKECPVGAL 211

Query: 119 VEGP 122
              P
Sbjct: 212 SLTP 215



 Score = 39.3 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 5/55 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
               C+    C  +CP  A+      +   GT    +      KCI CG C   C
Sbjct: 124 DGGVCVLDFKCVDVCPTGALQRLPKEKAKMGTALLDK-----DKCIGCGACVSVC 173



 Score = 34.7 bits (78), Expect = 4.0,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 103 CIYCGLCQEACPVDAIVEGPNFE 125
           C  CG C E CP   IV+ P +E
Sbjct: 90  CARCGRCAEVCPQKIIVQVPVWE 112



 Score = 33.5 bits (75), Expect = 8.7,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 21/75 (28%), Gaps = 2/75 (2%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R              C  C  C  +CP + I     P             +D   C+   
Sbjct: 75  RRPPGAVDEAEFVVVCARCGRCAEVCPQKIIVQV--PVWESVVAAGTPVLVDGGVCVLDF 132

Query: 108 LCQEACPVDAIVEGP 122
            C + CP  A+   P
Sbjct: 133 KCVDVCPTGALQRLP 147


>gi|57233555|ref|YP_180831.1| trichloroethene reductive dehalogenase [Dehalococcoides ethenogenes
           195]
 gi|57224003|gb|AAW39060.1| trichloroethene reductive dehalogenase [Dehalococcoides ethenogenes
           195]
          Length = 554

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 3/60 (5%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID---MIKCIYCGLCQEACPVD 116
            E C  C +C   CP QAI+ E              Y+       KCI C +C+  CP  
Sbjct: 434 REFCKTCGICAEHCPTQAISHEGPRYDSPHWDCVSGYEGWHLDYHKCINCTICEAVCPFF 493



 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 103 CIYCGLCQEACPVDAI-VEGPNFE 125
           C  CG+C E CP  AI  EGP ++
Sbjct: 437 CKTCGICAEHCPTQAISHEGPRYD 460


>gi|8163916|gb|AAF73916.1|AF228507_2 trichloroethene reductive dehalogenase [Dehalococcoides
           ethenogenes]
          Length = 554

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 3/60 (5%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID---MIKCIYCGLCQEACPVD 116
            E C  C +C   CP QAI+ E              Y+       KCI C +C+  CP  
Sbjct: 434 REFCKTCGICAEHCPTQAISHEGPRYDSPHWDCVSGYEGWHLDYHKCINCTICEAVCPFF 493



 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 103 CIYCGLCQEACPVDAI-VEGPNFE 125
           C  CG+C E CP  AI  EGP ++
Sbjct: 437 CKTCGICAEHCPTQAISHEGPRYD 460


>gi|21232095|ref|NP_638012.1| formate dehydrogenase related protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66767778|ref|YP_242540.1| formate dehydrogenase related protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188990892|ref|YP_001902902.1| formate dehydrogenase [Xanthomonas campestris pv. campestris str.
           B100]
 gi|21113840|gb|AAM41936.1| formate dehydrogenase related protein [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66573110|gb|AAY48520.1| formate dehydrogenase related protein [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167732652|emb|CAP50846.1| formate dehydrogenase [Xanthomonas campestris pv. campestris]
          Length = 990

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 35/97 (36%), Gaps = 17/97 (17%)

Query: 25  RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84
           RY F+ K     P+EK  ++P          Y    ++CI C  C   C    +      
Sbjct: 126 RYAFQRK-----PYEKDHSNP---------FYTYDPDQCILCGRCVEACQKVEVNETLSI 171

Query: 85  RCHDGTRRTVR---YDIDMIKCIYCGLCQEACPVDAI 118
                  R +      I+   C+ CG C   CP +A+
Sbjct: 172 DFSMEHPRVLWDGGKPINASSCVSCGHCVTVCPCNAL 208



 Score = 37.8 bits (86), Expect = 0.48,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 2/66 (3%)

Query: 66  CKLCEAICPAQAI--TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           C L       +          + ++       Y  D  +CI CG C EAC    + E  +
Sbjct: 111 CTLHNTFADMKMPIQRYAFQRKPYEKDHSNPFYTYDPDQCILCGRCVEACQKVEVNETLS 170

Query: 124 FEFATE 129
            +F+ E
Sbjct: 171 IDFSME 176


>gi|242243890|ref|ZP_04798333.1| formate dehydrogenase, alpha subunit [Staphylococcus epidermidis
           W23144]
 gi|242232664|gb|EES34976.1| formate dehydrogenase, alpha subunit [Staphylococcus epidermidis
           W23144]
          Length = 989

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 29/89 (32%), Gaps = 13/89 (14%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P+EK               Y     +CI C  C   C    +             R +  
Sbjct: 137 PYEKDYGP----------FYRYDPNQCILCGRCVEACQDVEVNETIRIDWERDHPRVIWD 186

Query: 97  D---IDMIKCIYCGLCQEACPVDAIVEGP 122
           +   I+   C+ CG C   CP +A++E  
Sbjct: 187 NDVPINESSCVSCGQCATVCPCNAMMEVN 215



 Score = 42.0 bits (97), Expect = 0.025,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 17/68 (25%), Gaps = 8/68 (11%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105
           R        C  C      CE                  R          Y  D  +CI 
Sbjct: 96  RILEKHMLYCTVCDYNNGDCEIHNTMDKWGIQHQTYKYKRKPYEKDYGPFYRYDPNQCIL 155

Query: 106 CGLCQEAC 113
           CG C EAC
Sbjct: 156 CGRCVEAC 163


>gi|224371827|ref|YP_002605991.1| putative pyridine nucleotide-disulfide oxidoreductase
           [Desulfobacterium autotrophicum HRM2]
 gi|223694544|gb|ACN17827.1| putative pyridine nucleotide-disulfide oxidoreductase
           [Desulfobacterium autotrophicum HRM2]
          Length = 777

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 29/97 (29%), Gaps = 14/97 (14%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEE--------RCIACKLCEAICPAQAITIESGPRC 86
             P +K   S  +                      RC  C +CE +CP  AI+       
Sbjct: 684 RLPIDKSRISLEYFDPSIKSYDSLDMCGGECASCGRCRDCHICETVCPEGAISRVELVPD 743

Query: 87  HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                    Y  D   CI CG C  ACP       PN
Sbjct: 744 GY------EYRADPELCIGCGFCAGACPCGIWALVPN 774


>gi|189467141|ref|ZP_03015926.1| hypothetical protein BACINT_03525 [Bacteroides intestinalis DSM
           17393]
 gi|224535655|ref|ZP_03676194.1| hypothetical protein BACCELL_00519 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|189435405|gb|EDV04390.1| hypothetical protein BACINT_03525 [Bacteroides intestinalis DSM
           17393]
 gi|224522728|gb|EEF91833.1| hypothetical protein BACCELL_00519 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 588

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 5/92 (5%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRR 92
              P+  G  SP  R            ++CI C+ CE++C   Q +      R    T  
Sbjct: 128 RRMPYNGGELSP--RKREVTSSIVRNMDKCIFCRRCESVCNEVQTVGALGAIRRGFNTTI 185

Query: 93  TVRYDIDMIK--CIYCGLCQEACPVDAIVEGP 122
              +D  M    C YCG C   CPV A+ E  
Sbjct: 186 APAFDKMMSDSECTYCGQCVAVCPVGALTERD 217



 Score = 35.5 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 5/67 (7%)

Query: 52  ALRRYPNGEERCIACKLCE---AICPAQAITIESGPRCHDGTRRTVRYDI--DMIKCIYC 106
            L  +PN    C  C  CE            +          +R V   I  +M KCI+C
Sbjct: 99  ILSDHPNDCLTCPKCGNCELQTLALRFNIRRMPYNGGELSPRKREVTSSIVRNMDKCIFC 158

Query: 107 GLCQEAC 113
             C+  C
Sbjct: 159 RRCESVC 165


>gi|217076873|ref|YP_002334589.1| Fe-hydrogenase, subunit beta [Thermosipho africanus TCF52B]
 gi|217036726|gb|ACJ75248.1| Fe-hydrogenase, subunit beta [Thermosipho africanus TCF52B]
          Length = 624

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/69 (39%), Positives = 33/69 (47%), Gaps = 10/69 (14%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           ALR+Y    E C +C LC   CP  AI+ E G            Y ID  KC+ CG+C E
Sbjct: 565 ALRKYVINPELCKSCSLCARACPQGAISGERGKP----------YVIDQEKCVKCGICFE 614

Query: 112 ACPVDAIVE 120
            C  +AI  
Sbjct: 615 KCKFNAIEL 623



 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 8/73 (10%)

Query: 78  ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
           +   +G           +Y I+   C  C LC  ACP  AI        + E  +    D
Sbjct: 551 MEHINGKCPSGTCTALRKYVINPELCKSCSLCARACPQGAI--------SGERGKPYVID 602

Query: 138 KERLLNNGDRWES 150
           +E+ +  G  +E 
Sbjct: 603 QEKCVKCGICFEK 615


>gi|229816103|ref|ZP_04446422.1| hypothetical protein COLINT_03157 [Collinsella intestinalis DSM
           13280]
 gi|229808315|gb|EEP44098.1| hypothetical protein COLINT_03157 [Collinsella intestinalis DSM
           13280]
          Length = 1181

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 17/101 (16%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ------------AITIESGPR 85
           FE G++    RG   +  + +   +CI C  C  +CP              A   E+   
Sbjct: 676 FELGASQFEKRGVAVMVPHWDE-TKCIQCNQCAYVCPHATIRPFALNEAEVAEAPETMRM 734

Query: 86  CHDGTRRTVRYD----IDMIKCIYCGLCQEACPVDAIVEGP 122
                 +   Y     +  + C+ C  C + CP DA+   P
Sbjct: 735 LDVKIPKDTGYKFAIAVSPLDCMGCTNCAKVCPKDALTMVP 775


>gi|156938164|ref|YP_001435960.1| nitrate reductase, subunit H [Ignicoccus hospitalis KIN4/I]
 gi|156567148|gb|ABU82553.1| putative nitrate reductase, subunit H [Ignicoccus hospitalis
           KIN4/I]
          Length = 321

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 8/69 (11%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
            +   N   RC  C+LC  +CP              G       D+   +C  CG C E 
Sbjct: 254 FKIKINDVSRCTKCRLCSMVCPMG--------IDVMGDYVLKNKDVTDYRCFRCGRCVEV 305

Query: 113 CPVDAIVEG 121
           CP + I  G
Sbjct: 306 CPTNVISLG 314


>gi|222053576|ref|YP_002535938.1| molybdopterin oxidoreductase [Geobacter sp. FRC-32]
 gi|221562865|gb|ACM18837.1| molybdopterin oxidoreductase [Geobacter sp. FRC-32]
          Length = 828

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 21/64 (32%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              RCI C  C  IC                  +        + C +CG C   CPV A+
Sbjct: 143 DMNRCIHCGKCARICDEIVSFGAYTFINRGIEAKMGTEFDGPLNCEFCGSCVSVCPVGAL 202

Query: 119 VEGP 122
           V  P
Sbjct: 203 VSRP 206


>gi|29345534|ref|NP_809037.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253571681|ref|ZP_04849087.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 1_1_6]
 gi|29337426|gb|AAO75231.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251838889|gb|EES66974.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 1_1_6]
          Length = 588

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 5/89 (5%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVR 95
           PF  G  SP  R            ++CI C+ CE++C   Q +      R    T     
Sbjct: 131 PFNGGELSP--RKREVTSSIVRNMDKCIFCRRCESVCNDVQTVGALGAIRRGFNTTIAPA 188

Query: 96  YDIDM--IKCIYCGLCQEACPVDAIVEGP 122
           +D  M   +C YCG C   CPV A+ E  
Sbjct: 189 FDRMMKDSECTYCGQCVAVCPVGALTERD 217



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 5/67 (7%)

Query: 52  ALRRYPNGEERCIACKLCEAICPA-----QAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
            L  +PN    C  C  CE    A     + +    G         T     +M KCI+C
Sbjct: 99  ILSDHPNDCLTCPKCGNCELQTLALRFNIREMPFNGGELSPRKREVTSSIVRNMDKCIFC 158

Query: 107 GLCQEAC 113
             C+  C
Sbjct: 159 RRCESVC 165


>gi|332298933|ref|YP_004440855.1| Ferredoxin hydrogenase [Treponema brennaborense DSM 12168]
 gi|332182036|gb|AEE17724.1| Ferredoxin hydrogenase [Treponema brennaborense DSM 12168]
          Length = 491

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 6/67 (8%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112
             E+C+ C LC   CP  AI     P         +  D      ID  KCI+CG C   
Sbjct: 145 DPEKCVNCGLCMQNCPYHAIIKIPVPCEEACPVGAISKDETGKERIDYHKCIFCGNCMRE 204

Query: 113 CPVDAIV 119
           CP  A++
Sbjct: 205 CPFGAMM 211



 Score = 41.6 bits (96), Expect = 0.037,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 5/80 (6%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV-----RYDIDMIK 102
           R +         +E C AC     +         + P   +  ++ +     R  ID  K
Sbjct: 89  REKPTWPMLTVLDEACNACVRSHYMVTNACQACLARPCMMNCAKKAIAITEGRARIDPEK 148

Query: 103 CIYCGLCQEACPVDAIVEGP 122
           C+ CGLC + CP  AI++ P
Sbjct: 149 CVNCGLCMQNCPYHAIIKIP 168


>gi|331269260|ref|YP_004395752.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing
           protein [Clostridium botulinum BKT015925]
 gi|329125810|gb|AEB75755.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Clostridium botulinum BKT015925]
          Length = 1168

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/132 (19%), Positives = 44/132 (33%), Gaps = 30/132 (22%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIE----------------SGPRCHDGTRRTV 94
            A+       E CI C  C  +CP   I                      +   G +   
Sbjct: 676 IAISVPEWSMENCIQCNQCSYVCPHAVIRPTLLTEEEYNNKPEGFKAVEAKGLKGEKLYY 735

Query: 95  RYDIDMIKCIYCGLCQEAC--PVDAIVEGP---------NFEFATE-TRQELYYDKERLL 142
             ++  + C  CG C E C  P  A+V  P         N+++A   + +E   +K    
Sbjct: 736 SMNVSALDCTGCGNCAEVCPAPTKALVMKPAATQESEQANYDYAQTLSVKENPMNK--YT 793

Query: 143 NNGDRWESEIVR 154
             G ++E  ++ 
Sbjct: 794 VKGSQFEKPLLE 805


>gi|303247146|ref|ZP_07333421.1| FAD dependent oxidoreductase [Desulfovibrio fructosovorans JJ]
 gi|302491572|gb|EFL51457.1| FAD dependent oxidoreductase [Desulfovibrio fructosovorans JJ]
          Length = 442

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 7/79 (8%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIE-------SGPRCHDGTRRTVRYDIDMIKCIYC 106
           R      ++CI C+ CE  CP     +E          R         +  +D+ +C+ C
Sbjct: 102 RPRYVDMDKCIGCRKCEYACPVVVPDVEQGGFSGRKAIRIPFSNAIPQKAVLDVTQCMLC 161

Query: 107 GLCQEACPVDAIVEGPNFE 125
           G C   CP  AIV     E
Sbjct: 162 GKCASVCPTGAIVYDQQPE 180


>gi|297526112|ref|YP_003668136.1| Cobyrinic acid ac-diamide synthase [Staphylothermus hellenicus DSM
           12710]
 gi|297255028|gb|ADI31237.1| Cobyrinic acid ac-diamide synthase [Staphylothermus hellenicus DSM
           12710]
          Length = 329

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 11/70 (15%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           R     EE+CI C  C  +CP  A+ + +             Y I+   C  C  C   C
Sbjct: 68  RYAEIVEEKCINCGECMKVCPFNAVELINNK-----------YVINKWICEGCYTCSFVC 116

Query: 114 PVDAIVEGPN 123
           P  AI    +
Sbjct: 117 PTKAIRMIRD 126


>gi|242398139|ref|YP_002993563.1| indolepyruvate: ferredoxin oxidoreductase, alpha subunit
           [Thermococcus sibiricus MM 739]
 gi|242264532|gb|ACS89214.1| indolepyruvate: ferredoxin oxidoreductase, alpha subunit
           [Thermococcus sibiricus MM 739]
          Length = 646

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 25/78 (32%), Gaps = 9/78 (11%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R       Y   E++C  C++C       AI  +   +            ++   C  CG
Sbjct: 577 RRGEKWPIYYVNEDKCTGCRICINAYGCPAIYWDEEKKQA---------RVEPTMCWGCG 627

Query: 108 LCQEACPVDAIVEGPNFE 125
            C + CP  A       E
Sbjct: 628 GCAQVCPFGAFEPMKEGE 645


>gi|256829899|ref|YP_003158627.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfomicrobium baculatum DSM 4028]
 gi|256579075|gb|ACU90211.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfomicrobium baculatum DSM 4028]
          Length = 427

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ C  C  C + CP +A++I S        R+  R D     C+ CG+C  ACP   +
Sbjct: 289 DEDLCNGCGKCASACPVEAMSIVSANDPRQPKRKKARVD--ENICLGCGVCVRACPEKTL 346

Query: 119 VE 120
             
Sbjct: 347 SL 348


>gi|269926643|ref|YP_003323266.1| molybdopterin oxidoreductase [Thermobaculum terrenum ATCC BAA-798]
 gi|269790303|gb|ACZ42444.1| molybdopterin oxidoreductase [Thermobaculum terrenum ATCC BAA-798]
          Length = 879

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 3/71 (4%)

Query: 60  EERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVR-YDIDMIKCIYCGLCQEACPVD 116
            +RC+ C  C  +C     A  +    R            D+    C+ CGLC + CPV 
Sbjct: 154 RDRCVLCGRCVRVCDELVGATALSWAQRGFRSYIDAAFGEDLKKSPCVSCGLCIQVCPVG 213

Query: 117 AIVEGPNFEFA 127
           A++     + A
Sbjct: 214 ALLNTSYHDTA 224


>gi|217076475|ref|YP_002334191.1| dihydroorotate dehydrogenase family protein [Thermosipho africanus
           TCF52B]
 gi|217036328|gb|ACJ74850.1| dihydroorotate dehydrogenase family protein [Thermosipho africanus
           TCF52B]
          Length = 360

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 12/60 (20%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E+C  CK+CE +CP  AITI+             +  +D  KC  CGLC+  CPV AI
Sbjct: 309 DHEKCTLCKICEKVCPYFAITID------------TKVHVDPNKCFGCGLCESRCPVKAI 356


>gi|161614124|ref|YP_001588089.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|189043393|sp|A9N025|RNFC_SALPB RecName: Full=Electron transport complex protein rnfC
 gi|161363488|gb|ABX67256.1| hypothetical protein SPAB_01863 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 735

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 37/107 (34%), Gaps = 3/107 (2%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +        +  CI CG C   CP  
Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            I     F         +  +++R      R+E+   R +  +   R
Sbjct: 429 NIPLVQYFRQEKAEINAIRLEEKRAAEAKARFEARQAR-LEREKAVR 474


>gi|78356857|ref|YP_388306.1| glutamate synthase (NADPH) GltB2 subunit [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78219262|gb|ABB38611.1| glutamate synthase (NADPH) GltB2 subunit [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 507

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 12/80 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            + RCI C++C   C  +A   +   +         R   D  KC  C  C   CP   +
Sbjct: 18  DDSRCINCEVCVRQCSYEAHYWDDTRQ---------RVSFDSSKCTGCHRCAAQCPTSCL 68

Query: 119 VEGPNFEFATETRQELYYDK 138
               N    +E R+  ++  
Sbjct: 69  TIRRN---PSEFRENAFWTP 85


>gi|11499973|ref|NP_071219.1| acetyl-CoA decarbonylase/synthase complex subunit alpha
           [Archaeoglobus fulgidus DSM 4304]
 gi|38502847|sp|O30274|ACDA2_ARCFU RecName: Full=Acetyl-CoA decarbonylase/synthase complex subunit
           alpha 2; Short=ACDS complex subunit alpha 2; AltName:
           Full=ACDS complex carbon monoxide dehydrogenase 2;
           Short=ACDS CODH 2
 gi|2650695|gb|AAB91266.1| acetyl-CoA decarbonylase/synthase, subunit alpha (cdhA-2)
           [Archaeoglobus fulgidus DSM 4304]
          Length = 798

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 3/68 (4%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C  C  C   CP      E+     +G R   + + +   CI CG C++ CP   I    
Sbjct: 405 CTQCGNCTIACPQGIRIGEAMEAAENGDR--SKLEKEWDVCIACGRCEQVCPKG-IPIID 461

Query: 123 NFEFATET 130
            + +A   
Sbjct: 462 MYNYAAWN 469


>gi|284162651|ref|YP_003401274.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Archaeoglobus
           profundus DSM 5631]
 gi|294862439|sp|P84626|HDLA_ARCPA RecName: Full=Heterodisulfide reductase subunit A-like protein
 gi|284012648|gb|ADB58601.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Archaeoglobus
           profundus DSM 5631]
          Length = 701

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 7/63 (11%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +E+C  C +C  +CP  AIT+            ++R +I+   C  CG+C  ACP  AI
Sbjct: 623 DKEKCSGCGICVPLCPYGAITMTK-------YNESMRAEINPALCKGCGVCAAACPSKAI 675

Query: 119 VEG 121
              
Sbjct: 676 KLH 678



 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           ++D  KC  CG+C   CP  AI      E
Sbjct: 621 EVDKEKCSGCGICVPLCPYGAITMTKYNE 649



 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 29/105 (27%), Gaps = 28/105 (26%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES---------GPRCHDGTRRTVRY 96
            F+ +   ++     + C  C  C  +CP +A   +                      + 
Sbjct: 231 NFKVKVRKKQTWVDWDLCTGCGACTDVCPPKARVPDEFNEGLSKRGAIYIQFPQAVPKKA 290

Query: 97  DIDMIKCIYCGL-------------------CQEACPVDAIVEGP 122
            ID+  CI CG                    C++ CP  A     
Sbjct: 291 VIDIDACIECGGRKFGTEPRKTKDGKPILAPCEKVCPTGAADRTK 335


>gi|260575576|ref|ZP_05843574.1| dihydroorotate dehydrogenase family protein [Rhodobacter sp. SW2]
 gi|259022219|gb|EEW25517.1| dihydroorotate dehydrogenase family protein [Rhodobacter sp. SW2]
          Length = 432

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 8/78 (10%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           +F   + + +    +  CI C  C   C       E              + +    C+ 
Sbjct: 330 QFLNLNYVTKAQIDQTSCIKCGRCHIAC-------EDTSHQAIAVSPERVFTVKDEDCVA 382

Query: 106 CGLCQEACPV-DAIVEGP 122
           C LC + CPV + I   P
Sbjct: 383 CNLCVDVCPVENCITMVP 400


>gi|269122058|ref|YP_003310235.1| hydrogenase large subunit domain protein [Sebaldella termitidis
           ATCC 33386]
 gi|268615936|gb|ACZ10304.1| hydrogenase large subunit domain protein [Sebaldella termitidis
           ATCC 33386]
          Length = 488

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 26/68 (38%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110
              ++ C  C  C A CP  AI     P         +  D      ID  KCI CGLC 
Sbjct: 129 YIDKQLCKKCGKCVASCPYHAIVDIERPCKKSCPVDAIEIDENDIAIIDSTKCINCGLCI 188

Query: 111 EACPVDAI 118
             CP  AI
Sbjct: 189 NNCPFGAI 196


>gi|258406484|ref|YP_003199226.1| nitroreductase [Desulfohalobium retbaense DSM 5692]
 gi|257798711|gb|ACV69648.1| nitroreductase [Desulfohalobium retbaense DSM 5692]
          Length = 273

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 11/66 (16%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +  +   E+RCI C  C A CPA  I++++G             +I   +CI C  C   
Sbjct: 1   MLNFRIDEDRCIQCGECAADCPAMCISLDNG-----------LPEIHEKRCIRCQHCLAV 49

Query: 113 CPVDAI 118
           CP  A+
Sbjct: 50  CPTAAL 55



 Score = 37.0 bits (84), Expect = 0.81,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 15/39 (38%)

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
            + + ID  +CI CG C   CP   I          E R
Sbjct: 1   MLNFRIDEDRCIQCGECAADCPAMCISLDNGLPEIHEKR 39


>gi|242280739|ref|YP_002992868.1| glutamate synthase alpha subunit domain protein [Desulfovibrio
           salexigens DSM 2638]
 gi|242123633|gb|ACS81329.1| glutamate synthase alpha subunit domain protein [Desulfovibrio
           salexigens DSM 2638]
          Length = 775

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 27/73 (36%), Gaps = 6/73 (8%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
                F+      +  +    C  C LCE +CP  AI+ + G        +      D  
Sbjct: 696 PRLTHFKDVQECAQECSSCGSCRDCGLCETVCPQAAISRKGGE------GKDFEMVCDSE 749

Query: 102 KCIYCGLCQEACP 114
           KCI CG C   CP
Sbjct: 750 KCIGCGFCANVCP 762



 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 4/32 (12%)

Query: 103 CIYCGLCQEACPVDAIV----EGPNFEFATET 130
           C  CGLC+  CP  AI     EG +FE   ++
Sbjct: 717 CRDCGLCETVCPQAAISRKGGEGKDFEMVCDS 748


>gi|163858985|ref|YP_001633283.1| iron-sulfur cluster-binding protein [Bordetella petrii DSM 12804]
 gi|163262713|emb|CAP45016.1| iron-sulfur cluster-binding protein [Bordetella petrii]
          Length = 698

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 9/79 (11%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + C  C  C + CPA A+             +          C+ CGLC++ CP DAI
Sbjct: 565 DAQACTLCMSCVSACPAHALQDNPQLPQLRFIEKN---------CVQCGLCEKTCPEDAI 615

Query: 119 VEGPNFEFATETRQELYYD 137
              P    +   ++ +  +
Sbjct: 616 QLVPRLLLSERRKEAVVLN 634



 Score = 40.5 bits (93), Expect = 0.083,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 9/58 (15%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           I C  C  +C A+AI  ++            +  +D   C  CG C   CP  A+   
Sbjct: 314 IGCNACVDVCSAEAIRSDA---------HRQQIVVDPYLCAGCGACTTVCPSGAMAYT 362


>gi|333005860|gb|EGK25376.1| electron transport complex, RnfABCDGE type, B subunit [Shigella
           flexneri K-272]
 gi|333018896|gb|EGK38189.1| electron transport complex, RnfABCDGE type, B subunit [Shigella
           flexneri K-227]
          Length = 192

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   +             + +    C  C LC + CP   I
Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVISDLCTGCNLCVDPCPTHCI 162

Query: 119 VEGPNFEFATETRQEL 134
              P  E     + +L
Sbjct: 163 SLQPVAETPDSWKWDL 178



 Score = 35.5 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C  C +ACPVDAI
Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132


>gi|319638998|ref|ZP_07993756.1| ferredoxin [Neisseria mucosa C102]
 gi|317399902|gb|EFV80565.1| ferredoxin [Neisseria mucosa C102]
          Length = 282

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   S           + + +   +C  CGLC   CPVD I
Sbjct: 76  DESACIGCTACIRACPVDAIMGASK----------LMHTVISDECTGCGLCVTPCPVDCI 125

Query: 119 VEGP 122
              P
Sbjct: 126 DMVP 129



 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/22 (59%), Positives = 14/22 (63%)

Query: 98  IDMIKCIYCGLCQEACPVDAIV 119
           ID   CI C  C  ACPVDAI+
Sbjct: 75  IDESACIGCTACIRACPVDAIM 96


>gi|302872484|ref|YP_003841120.1| dihydroorotate dehydrogenase family protein [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302575343|gb|ADL43134.1| dihydroorotate dehydrogenase family protein [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 381

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 12/67 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +E+C +C  C  +C   AI  + G    +              C  CGLC E CPV AI
Sbjct: 326 NKEKCTSCGKCFTVCIYDAIEKDDGKFKVN------------QNCDGCGLCAELCPVKAI 373

Query: 119 VEGPNFE 125
                 E
Sbjct: 374 SMVKRGE 380


>gi|255523967|ref|ZP_05390930.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Clostridium carboxidivorans P7]
 gi|296185205|ref|ZP_06853615.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium
           carboxidivorans P7]
 gi|255512398|gb|EET88675.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Clostridium carboxidivorans P7]
 gi|296050039|gb|EFG89463.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium
           carboxidivorans P7]
          Length = 1172

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 31/111 (27%), Gaps = 20/111 (18%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHD 88
            +   + E ++       ++CI C  C  +C                 A         + 
Sbjct: 672 ITAWEKREISITVPKWNSDKCIQCNQCSYVCSHAVIRPTLLTCEELKNAPAGFETVPANG 731

Query: 89  GTRRTVRYDIDMIKCIYCGLCQEACP--VDAIVEGPNFEFATETRQELYYD 137
                    I    C  CG+C  +CP    AI   P      E R +   D
Sbjct: 732 FKNMQYHLAISAQDCTGCGICVVSCPAKEKAIDMNPL----AENRDKYITD 778


>gi|229829818|ref|ZP_04455887.1| hypothetical protein GCWU000342_01916 [Shuttleworthia satelles DSM
           14600]
 gi|229791807|gb|EEP27921.1| hypothetical protein GCWU000342_01916 [Shuttleworthia satelles DSM
           14600]
          Length = 219

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 13/84 (15%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
             P E+   S  F G     +     + CI C  C A+CP   I  +S P          
Sbjct: 146 KKPIERA--SFTFGGAEKKAKGYFITDACIGCGSCAAVCPQNCIVTDSIP---------- 193

Query: 95  RYDIDMIKCIYCGLCQEACPVDAI 118
            Y I+   C++CG C  ACPV A+
Sbjct: 194 -YIIEQEHCLHCGNCLTACPVGAV 216


>gi|239618161|ref|YP_002941483.1| Ferredoxin hydrogenase [Kosmotoga olearia TBF 19.5.1]
 gi|239506992|gb|ACR80479.1| Ferredoxin hydrogenase [Kosmotoga olearia TBF 19.5.1]
          Length = 478

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 28/69 (40%), Gaps = 6/69 (8%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112
             E+C+ C LC   CP  AI     P            D      ID  KC+ CG C  A
Sbjct: 151 DSEKCVGCGLCAKNCPYGAIIKIQRPCVSACAVGATYSDENGFVLIDDEKCVQCGECAVA 210

Query: 113 CPVDAIVEG 121
           CP  AIVE 
Sbjct: 211 CPFGAIVES 219



 Score = 39.3 bits (90), Expect = 0.16,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 26/64 (40%), Gaps = 13/64 (20%)

Query: 57  PNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            +  + C  C  K C   CP  AI I  G              ID  KC+ CGLC + CP
Sbjct: 118 YHITDMCRNCSAKYCINSCPRNAIPIVDGK-----------PKIDSEKCVGCGLCAKNCP 166

Query: 115 VDAI 118
             AI
Sbjct: 167 YGAI 170


>gi|163857881|ref|YP_001632179.1| ferredoxin-NADP oxidoreductase [Bordetella petrii DSM 12804]
 gi|163261609|emb|CAP43911.1| ferredoxin-NADP oxidoreductase [Bordetella petrii]
          Length = 416

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 11/69 (15%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
              L+++    E CI C  CE  CP  AIT +              Y +D   C  C  C
Sbjct: 7   PEVLKQHLIDPEICIRCNTCEETCPIDAITHDGN-----------NYVVDPDICNGCMAC 55

Query: 110 QEACPVDAI 118
              CP  +I
Sbjct: 56  VPPCPTGSI 64



 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 84  PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI-VEGPNF 124
                      ++ ID   CI C  C+E CP+DAI  +G N+
Sbjct: 1   MNAPLPPEVLKQHLIDPEICIRCNTCEETCPIDAITHDGNNY 42


>gi|160936128|ref|ZP_02083501.1| hypothetical protein CLOBOL_01024 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440938|gb|EDP18662.1| hypothetical protein CLOBOL_01024 [Clostridium bolteae ATCC
           BAA-613]
          Length = 574

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 14/94 (14%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
           +FF+ +   +   ++           AL  +    ++C  C LC   CPA AI       
Sbjct: 493 HFFRDEYEAHIKEKRCPAGVC----KALLSFNIDRDKCRGCTLCARNCPAGAIVGS---- 544

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
                     + ID  KCI CG C E C   AI 
Sbjct: 545 ------VKNPHVIDQNKCIKCGACMEKCKFGAIY 572


>gi|154497075|ref|ZP_02035771.1| hypothetical protein BACCAP_01368 [Bacteroides capillosus ATCC
           29799]
 gi|150273474|gb|EDN00602.1| hypothetical protein BACCAP_01368 [Bacteroides capillosus ATCC
           29799]
          Length = 454

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 25/84 (29%), Gaps = 4/84 (4%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGEER---CIACKLCEAICPAQAITIESGPRCHDGT 90
           I  P           G  AL +    +     CI C  C   CP   +  E         
Sbjct: 345 IALPDLDFPLLWNNNGFVALNQKDAAKPATTACIRCGRCVDHCPMNLMAFEISKAYEQRD 404

Query: 91  RRTVRYDIDMIKCIYCGLCQEACP 114
              +R  I    CI CG C   CP
Sbjct: 405 VEWLR-SIRADLCIECGCCSYVCP 427


>gi|312879492|ref|ZP_07739292.1| glycyl-radical enzyme activating protein family [Aminomonas
           paucivorans DSM 12260]
 gi|310782783|gb|EFQ23181.1| glycyl-radical enzyme activating protein family [Aminomonas
           paucivorans DSM 12260]
          Length = 301

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 16/82 (19%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           +RCI C  C   CP +A++  +               +D+ +C+ CG+C   CP  A+  
Sbjct: 53  DRCIGCGRCVESCPHKALSFVNDGVH-----------VDLSRCVGCGVCASVCPSLALEL 101

Query: 121 G----PNFEFATETRQE-LYYD 137
                   E   E R++ L+YD
Sbjct: 102 VGRTLTVPELVAEARKDELFYD 123



 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 4/71 (5%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +++Y   +   I        CP       +            R D    +CI CG C E+
Sbjct: 9   IKKYSIHDGPGIRTTFHLKGCPLSCWWCHNPESQSLLPVVLYRKD----RCIGCGRCVES 64

Query: 113 CPVDAIVEGPN 123
           CP  A+    +
Sbjct: 65  CPHKALSFVND 75


>gi|291518800|emb|CBK74021.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta
           subunits [Butyrivibrio fibrisolvens 16/4]
          Length = 289

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 38/112 (33%), Gaps = 22/112 (19%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI+C +C   C   A+ +E G              ID  KC  C  C ++CP DA    P
Sbjct: 167 CISCGVCVKACRESALQMEDGKV-----------TIDRSKCNNCARCVKSCPTDAWEGTP 215

Query: 123 NFEFAT--------ETRQEL---YYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            +  +            +EL     DKE L    D        N      +R
Sbjct: 216 GYIVSFGGTFGNKIYKAEELVPIIRDKETLFRVTDAAIEYFEANAKPSERFR 267



 Score = 35.1 bits (79), Expect = 3.0,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 15/45 (33%)

Query: 78  ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                      G +  +  +     CI CG+C +AC   A+    
Sbjct: 142 NNCLKAEENDVGIKGGMTVEYKEDACISCGVCVKACRESALQMED 186


>gi|262274543|ref|ZP_06052354.1| electron transport complex protein RnfC [Grimontia hollisae CIP
           101886]
 gi|262221106|gb|EEY72420.1| electron transport complex protein RnfC [Grimontia hollisae CIP
           101886]
          Length = 690

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 45/134 (33%), Gaps = 5/134 (3%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYP--NGEERCIACKLCEAICPAQAITIESGPRCHDG 89
            TI +P    +         + R      GE  CI C  C   CPA  +  +        
Sbjct: 346 YTIPHPNVPVTKVTNCILVPSRREITPSEGEVACIRCSACAEACPAS-LLPQQLQWYAKD 404

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWE 149
                  + ++  CI CG C   CP   I     +  A    +    +++      +R+E
Sbjct: 405 QDFDKCEEYNLFDCIECGACAYVCP-SEIPLVQYYRQAKSEIRTRNAEQQAAERAKERFE 463

Query: 150 SEIVRNIVTDSPYR 163
           ++  R +  D   R
Sbjct: 464 AKKAR-MERDKKAR 476


>gi|257452331|ref|ZP_05617630.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. 3_1_5R]
 gi|317058874|ref|ZP_07923359.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. 3_1_5R]
 gi|313684550|gb|EFS21385.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. 3_1_5R]
          Length = 1192

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 40/122 (32%), Gaps = 22/122 (18%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI----ESGPRCHDGTRRT 93
           FE G+++   RG            +CI C  C  +CP   I      E           T
Sbjct: 676 FENGTSAFEKRGVAVDVPLW-DSTKCIQCNQCSYVCPHAVIRPFLVSEEEKAASPVEFAT 734

Query: 94  V------------RYDIDMIKCIYCGLCQEACPVD--AIVEGPN---FEFATETRQELYY 136
           +            R  +  + C+ CG C   CP    AI   P     +   + + +  +
Sbjct: 735 LKAMGKGLDGLTYRIQVSPLDCVGCGSCVNVCPAPGKAITMQPIATSIDAEEDKKADYLF 794

Query: 137 DK 138
           +K
Sbjct: 795 NK 796


>gi|227113510|ref|ZP_03827166.1| pyruvate-flavodoxin oxidoreductase [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 1177

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 34/143 (23%), Gaps = 25/143 (17%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P     T  +   +   A        + C  C  C A C
Sbjct: 646 MLAGLGDTL------PVSALPPDGTWPTGTTKWEKRNIAEEIPLWQPQLCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPVDA 117
           P  AI  +                          +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVQPDAMEHAPASLQSLDVKARDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 118 IVEGPNFEFATETR-QELYYDKE 139
                      E+R   L  +KE
Sbjct: 760 RQNPEIKAINMESRLDNLTAEKE 782


>gi|160893746|ref|ZP_02074530.1| hypothetical protein CLOL250_01300 [Clostridium sp. L2-50]
 gi|156864731|gb|EDO58162.1| hypothetical protein CLOL250_01300 [Clostridium sp. L2-50]
          Length = 661

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 27/69 (39%), Gaps = 10/69 (14%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            AL RY    E C  C  C   CP  AIT E              + ID  KCI CG C 
Sbjct: 600 KALVRYKIDPEACKGCSKCARNCPVGAITGEIRKP----------FVIDTAKCIKCGACI 649

Query: 111 EACPVDAIV 119
           + C   A+ 
Sbjct: 650 DNCAFHAVY 658



 Score = 37.4 bits (85), Expect = 0.60,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 20/62 (32%), Gaps = 8/62 (12%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
            +          +  VRY ID   C  C  C   CPV AI          E R+    D 
Sbjct: 588 HVVDKRCRTGNCKALVRYKIDPEACKGCSKCARNCPVGAI--------TGEIRKPFVIDT 639

Query: 139 ER 140
            +
Sbjct: 640 AK 641


>gi|121534126|ref|ZP_01665951.1| NADH dehydrogenase (quinone) [Thermosinus carboxydivorans Nor1]
 gi|121307229|gb|EAX48146.1| NADH dehydrogenase (quinone) [Thermosinus carboxydivorans Nor1]
          Length = 596

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 10/59 (16%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           C  C LC+  CP +AI+ E   R            I+  KCI CG C   CP  AI++G
Sbjct: 548 CKGCGLCKKACPVEAISGEIKGRHS----------INQAKCIKCGACMAKCPFKAIIKG 596



 Score = 37.4 bits (85), Expect = 0.65,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 19/39 (48%)

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +  RC  G    +        C  CGLC++ACPV+AI
Sbjct: 525 HINDKRCPAGVCAKLSGYQITELCKGCGLCKKACPVEAI 563


>gi|82776743|ref|YP_403092.1| putative oxidoreductase, Fe-S subunit [Shigella dysenteriae Sd197]
 gi|309788912|ref|ZP_07683507.1| pyruvate:ferredoxin oxidoreductase [Shigella dysenteriae 1617]
 gi|81240891|gb|ABB61601.1| putative oxidoreductase, Fe-S subunit [Shigella dysenteriae Sd197]
 gi|308923183|gb|EFP68695.1| pyruvate:ferredoxin oxidoreductase [Shigella dysenteriae 1617]
          Length = 1174

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDTL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|15642791|ref|NP_227832.1| pyruvate ferredoxin oxidoreductase, delta subunit [Thermotoga
           maritima MSB8]
 gi|4980500|gb|AAD35110.1|AE001690_4 pyruvate ferredoxin oxidoreductase, delta subunit [Thermotoga
           maritima MSB8]
          Length = 101

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 35/92 (38%), Gaps = 10/92 (10%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
            + G+      G   + R    +E+CI C  C   CP QAI  E G              
Sbjct: 18  DKPGTAREYKTGAWRVMRPILHKEKCIDCMFCWLYCPDQAIIQEGGIMKGF--------- 68

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
            +   C  CGLC   CP  AI   P  EF +E
Sbjct: 69  -NYDYCKGCGLCANVCPKQAIEMRPETEFLSE 99


>gi|45359186|ref|NP_988743.1| ferredoxin [Methanococcus maripaludis S2]
 gi|45048061|emb|CAF31179.1| ferredoxin [Methanococcus maripaludis S2]
          Length = 170

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTV--RYDIDMIKCIYCGLCQEACPVDAIV 119
           CI C  C+  CP  AI +            +      ID  KCIYC  C + CPV A+ 
Sbjct: 52  CIGCGGCKNACPTNAIEMIPVEPVKITETYSKEAIPKIDYDKCIYCLYCHDFCPVFALF 110



 Score = 37.8 bits (86), Expect = 0.51,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           +    CI CG C+ ACP +AI   P
Sbjct: 47  VFSEICIGCGGCKNACPTNAIEMIP 71


>gi|313201532|ref|YP_004040190.1| RnfABCDGE type electron transport complex subunit B [Methylovorus
           sp. MP688]
 gi|312440848|gb|ADQ84954.1| electron transport complex, RnfABCDGE type, B subunit [Methylovorus
           sp. MP688]
          Length = 280

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 30/81 (37%), Gaps = 10/81 (12%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
             +P+   +   +     E+ CI C LC   CP  AI   S             + +   
Sbjct: 80  PLNPQHGVQKPKQVAFIDEQTCIGCTLCIQACPVDAILGASKQ----------MHTVIAD 129

Query: 102 KCIYCGLCQEACPVDAIVEGP 122
           +C  C LC   CPVD I   P
Sbjct: 130 ECTGCELCIAPCPVDCITMEP 150


>gi|269102486|ref|ZP_06155183.1| anaerobic sulfite reductase subunit C [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268162384|gb|EEZ40880.1| anaerobic sulfite reductase subunit C [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 336

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 28/87 (32%), Gaps = 8/87 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +    +    G   + +     ERCI C  C   C   A+   S             
Sbjct: 153 CPNDCAKANMADFGVLGVAKMHFNAERCIGCGACVRACEHHAVGCLSLKNGKAIK----- 207

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGP 122
              +  KCI CG C  ACP  A    P
Sbjct: 208 ---EESKCIGCGECVLACPTLAWQRDP 231



 Score = 35.1 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 11/52 (21%), Positives = 16/52 (30%), Gaps = 1/52 (1%)

Query: 68  LCEAICPAQAITIESGPRC-HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               I  A      +       G     +   +  +CI CG C  AC   A+
Sbjct: 144 YHLKIVLAGCPNDCAKANMADFGVLGVAKMHFNAERCIGCGACVRACEHHAV 195


>gi|260892247|ref|YP_003238344.1| NADH dehydrogenase (quinone) [Ammonifex degensii KC4]
 gi|260864388|gb|ACX51494.1| NADH dehydrogenase (quinone) [Ammonifex degensii KC4]
          Length = 629

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 17/98 (17%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            ++Y F+ +   +   ++       +    +       E C+ C  C   CP  AI    
Sbjct: 533 TIKY-FREEYEAHIREKRCPARTCTKVGKYVI-----GEDCVQCGWCRDTCPHGAI---- 582

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
                    +   + I+   C  CG C   CPV AI  
Sbjct: 583 -------LEKREGFYIEPDLCQRCGACLGVCPVGAIYL 613



 Score = 34.7 bits (78), Expect = 4.0,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 10/61 (16%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
            I           +  +Y I    C+ CG C++ CP  AI+         E R+  Y + 
Sbjct: 544 HIREKRCPARTCTKVGKYVIGED-CVQCGWCRDTCPHGAIL---------EKREGFYIEP 593

Query: 139 E 139
           +
Sbjct: 594 D 594


>gi|297569257|ref|YP_003690601.1| Electron transfer flavoprotein alpha/beta-subunit [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296925172|gb|ADH85982.1| Electron transfer flavoprotein alpha/beta-subunit [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 402

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 22/64 (34%), Gaps = 12/64 (18%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 E CI C LCE  C   AI +E G                   C  CG C E C 
Sbjct: 1   MLKIDAEACIGCGLCEDACTFGAIQVEDGLAVVG------------DNCTLCGACVEVCE 48

Query: 115 VDAI 118
           V A+
Sbjct: 49  VGAL 52


>gi|322420257|ref|YP_004199480.1| NADH dehydrogenase (quinone) [Geobacter sp. M18]
 gi|320126644|gb|ADW14204.1| NADH dehydrogenase (quinone) [Geobacter sp. M18]
          Length = 616

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 33/100 (33%), Gaps = 23/100 (23%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEH----ALRRYPNGEERCIACKLCEAICPAQAI 78
            LR F         P E  +     R        L  Y    E+C+ C  C  +CP   I
Sbjct: 533 TLRNF---------PEEYQAHIADKRCPALRCAELVCYSIDAEKCVGCTRCARVCPVDCI 583

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + E                ID   CI CG C +AC   A+
Sbjct: 584 SGEVKKPHL----------IDQRGCIRCGECLKACNFAAV 613


>gi|253576869|ref|ZP_04854194.1| NADH dehydrogenase [Paenibacillus sp. oral taxon 786 str. D14]
 gi|251843736|gb|EES71759.1| NADH dehydrogenase [Paenibacillus sp. oral taxon 786 str. D14]
          Length = 628

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 15/99 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            L+Y F+ +   +   +K           +L  Y    E+C  C LC   CPA+AI+ E 
Sbjct: 545 TLKY-FREEYIAHVVDKKCPAGVC----RSLITYTIDPEKCRGCTLCARKCPAEAISGEM 599

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
                        + ID   CI CG+C ++C  +AI + 
Sbjct: 600 KEP----------HVIDPQLCIKCGICFDSCKFEAIYKS 628


>gi|227485075|ref|ZP_03915391.1| pyruvate synthase [Anaerococcus lactolyticus ATCC 51172]
 gi|227236908|gb|EEI86923.1| pyruvate synthase [Anaerococcus lactolyticus ATCC 51172]
          Length = 1174

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 31/102 (30%), Gaps = 19/102 (18%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ----------------AITIES 82
           E  +T    RG  AL       ++CI C  C  +CP                  A     
Sbjct: 665 ETATTQYEKRG-VALNVPEWQIDKCIQCNQCSFVCPHAVIRPFLVTEEEKAKAPAGFATK 723

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD--AIVEGP 122
                       R  I  + C  CG C + CP    A++  P
Sbjct: 724 KAIGKGLEGYDFRIQISPLDCTGCGNCADVCPAPQKALIMKP 765


>gi|139437985|ref|ZP_01771538.1| Hypothetical protein COLAER_00525 [Collinsella aerofaciens ATCC
           25986]
 gi|133776182|gb|EBA40002.1| Hypothetical protein COLAER_00525 [Collinsella aerofaciens ATCC
           25986]
          Length = 401

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 8/65 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E CI C  C   C +  I ++          R  R       CI CG C +ACPV+AI
Sbjct: 7   DSEACIGCGRCVRACASDGIVVKGE--------RPNRCARVTDGCILCGGCVDACPVNAI 58

Query: 119 VEGPN 123
               +
Sbjct: 59  SIERD 63


>gi|33112418|sp|Q94IN5|PNO_EUGGR RecName: Full=Pyruvate dehydrogenase [NADP+], mitochondrial;
           AltName: Full=Aquacobalamin reductase [NADPH]; AltName:
           Full=EgPNOmt; AltName: Full=Pyruvate:NADP+
           oxidoreductase; Flags: Precursor
 gi|13872738|emb|CAC37628.1| pyruvate:NADP+ oxidoreductase [Euglena gracilis]
          Length = 1803

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 30/118 (25%), Gaps = 17/118 (14%)

Query: 31  KTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI---------- 78
             ++  P        +   +   A          C  C  C  +CP   I          
Sbjct: 722 PVSVMTPGGTFPVGTTQYAKRAIAAFIPQWIPANCTQCNYCSYVCPHATIRPFVLTDQEV 781

Query: 79  -----TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
                +  +     D      R  +    C  C +C E CP DA+     F      R
Sbjct: 782 QLAPESFVTRKAKGDYQGMNFRIQVAPEDCTGCQVCVETCPDDALEMTDAFTATPVQR 839


>gi|9909124|dbj|BAB12024.1| pyruvate: NADP+ oxidoreductase [Euglena gracilis]
          Length = 1803

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/118 (16%), Positives = 30/118 (25%), Gaps = 17/118 (14%)

Query: 31  KTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI---------- 78
             ++  P        +   +   A          C  C  C  +CP   I          
Sbjct: 722 PVSVMTPGGTFPVGTTQYAKRAIAAFIPQWIPANCTQCNYCSYVCPHATIRPFVLTDQEV 781

Query: 79  -----TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
                +  +     D      R  +    C  C +C E CP DA+     F      R
Sbjct: 782 QLAPESFVTRKAKGDYQGMNFRIQVAPEDCTGCQVCVETCPDDALEMTDAFTATPVQR 839


>gi|302348244|ref|YP_003815882.1| putative ATPase RIL [Acidilobus saccharovorans 345-15]
 gi|302328656|gb|ADL18851.1| putative ATPase RIL [Acidilobus saccharovorans 345-15]
          Length = 601

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 27/74 (36%), Gaps = 3/74 (4%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRC--HDGTRRTVRYDIDMIKCIYCGLCQE 111
           R      + C   K C   C +     +S         T+   +  I    CI CGLC +
Sbjct: 3   RIAVIDSDECKP-KRCSYQCISVCPINKSKKDVAIEADTKARAKPVIHEDVCIGCGLCVK 61

Query: 112 ACPVDAIVEGPNFE 125
           ACP DAI      E
Sbjct: 62  ACPFDAIAIVNLPE 75


>gi|300936048|ref|ZP_07150995.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 21-1]
 gi|300458774|gb|EFK22267.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia
           coli MS 21-1]
          Length = 192

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   +             + +    C  C LC + CP   I
Sbjct: 113 DENNCIGCTKCIQSCPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTHCI 162

Query: 119 VEGPNFEFATETRQEL 134
              P  E     + +L
Sbjct: 163 SLQPVAETPDSWKWDL 178



 Score = 34.3 bits (77), Expect = 5.0,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C  C ++CPVDAI
Sbjct: 112 IDENNCIGCTKCIQSCPVDAI 132


>gi|291549368|emb|CBL25630.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Ruminococcus torques L2-14]
          Length = 622

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 10/67 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           LR +    E+C  C  C   CP  AIT           +    + ID  KCI CG C + 
Sbjct: 564 LRVFKIDPEKCKGCSKCAKNCPVNAITG----------KIKSPFTIDNSKCIKCGSCIDN 613

Query: 113 CPVDAIV 119
           CP  A+ 
Sbjct: 614 CPFGAVY 620


>gi|258542561|ref|YP_003187994.1| glutamate synthase (NADPH) small subunit [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256633639|dbj|BAH99614.1| glutamate synthase [NADPH] small subunit [Acetobacter pasteurianus
           IFO 3283-01]
 gi|256636698|dbj|BAI02667.1| glutamate synthase [NADPH] small subunit [Acetobacter pasteurianus
           IFO 3283-03]
 gi|256639751|dbj|BAI05713.1| glutamate synthase [NADPH] small subunit [Acetobacter pasteurianus
           IFO 3283-07]
 gi|256642807|dbj|BAI08762.1| glutamate synthase [NADPH] small subunit [Acetobacter pasteurianus
           IFO 3283-22]
 gi|256645862|dbj|BAI11810.1| glutamate synthase [NADPH] small subunit [Acetobacter pasteurianus
           IFO 3283-26]
 gi|256648915|dbj|BAI14856.1| glutamate synthase [NADPH] small subunit [Acetobacter pasteurianus
           IFO 3283-32]
 gi|256651902|dbj|BAI17836.1| glutamate synthase [NADPH] small subunit [Acetobacter pasteurianus
           IFO 3283-01-42C]
 gi|256654959|dbj|BAI20886.1| glutamate synthase [NADPH] small subunit [Acetobacter pasteurianus
           IFO 3283-12]
          Length = 584

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 26/78 (33%), Gaps = 3/78 (3%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
                RC++C  C       A   E         +    Y + M  C  C +C E CP  
Sbjct: 497 RYEAGRCLSCGNCFECDNCYASCPEQAITRLGPGKG---YAVAMDMCTGCAVCAEQCPCH 553

Query: 117 AIVEGPNFEFATETRQEL 134
           AI   P    AT  +  L
Sbjct: 554 AIEMDPEPVEATPAKGSL 571


>gi|251773162|gb|EES53715.1| NADH dehydrogenase (quinone) F subunit [Leptospirillum
           ferrodiazotrophum]
          Length = 617

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 10/66 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L +Y   EE C  C LCE +CP  ++T + G   H          I++  CI C  C +A
Sbjct: 561 LIKYVVIEEDCTTCGLCEPVCPTGSVTWDKGEVAH----------INLETCIRCKACVDA 610

Query: 113 CPVDAI 118
           C   AI
Sbjct: 611 CKFRAI 616



 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 15/44 (34%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            I             ++Y +    C  CGLC+  CP  ++    
Sbjct: 547 HIRDKHCPGTVCANLIKYVVIEEDCTTCGLCEPVCPTGSVTWDK 590


>gi|257063697|ref|YP_003143369.1| 2-oxoacid:ferredoxin oxidoreductase, delta subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256791350|gb|ACV22020.1| 2-oxoacid:ferredoxin oxidoreductase, delta subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 356

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 28/84 (33%), Gaps = 9/84 (10%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E     P       +       + C++C  C   C + A  ++S         R      
Sbjct: 259 EAIEQLPEMAERVTMTVSFTDTDACVSCHDCTECCISGARALDSASGVVSYDVRY----- 313

Query: 99  DMIKCIYCGLCQEACPVDAIVEGP 122
               CI CG C +ACPV AI    
Sbjct: 314 ----CIGCGACVDACPVAAITMID 333



 Score = 34.3 bits (77), Expect = 5.6,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 9/48 (18%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           C+ C   CP  AI+ ++               ID   C  CGLC   C
Sbjct: 18  CRRCAIACPVGAISFDAETNGP---------VIDEKACTKCGLCMGVC 56


>gi|254513803|ref|ZP_05125864.1| electron transport complex protein RnfB [gamma proteobacterium
           NOR5-3]
 gi|219676046|gb|EED32411.1| electron transport complex protein RnfB [gamma proteobacterium
           NOR5-3]
          Length = 202

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 27/84 (32%), Gaps = 10/84 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E          E         EE CI C  C   CP  AI   +             + +
Sbjct: 97  EAPPLDAEHGAETETTVAFIIEEDCIGCTKCIQACPVDAIVGAAKQ----------MHTV 146

Query: 99  DMIKCIYCGLCQEACPVDAIVEGP 122
              +C  C LC + CPVD I   P
Sbjct: 147 IAAECTGCDLCVDPCPVDCIEMLP 170


>gi|188584742|ref|YP_001916287.1| formate dehydrogenase, alpha subunit [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179349429|gb|ACB83699.1| formate dehydrogenase, alpha subunit [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 893

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 10/98 (10%)

Query: 35  NYPFEKGSTSPRFRGEHAL-------RRYPNGEERCIACKLCEAICPA-QAITIESGPRC 86
           +Y +E G T  RFRGE          R      ++CI C  C  +C   Q          
Sbjct: 113 DYCYEYGVTESRFRGEVIEHEIDETSRFVERDLDKCILCGKCIRVCHEIQGSEAIDFMDR 172

Query: 87  HDGTRRTVRYDIDMIK--CIYCGLCQEACPVDAIVEGP 122
              T+    YD  +    C+ CG C   CPV A++  P
Sbjct: 173 GFETKVATFYDKGLSDSPCVDCGNCINVCPVGALIPKP 210


>gi|217979113|ref|YP_002363260.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Methylocella silvestris BL2]
 gi|217504489|gb|ACK51898.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Methylocella silvestris BL2]
          Length = 1217

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 24/93 (25%), Gaps = 28/93 (30%)

Query: 58  NGEERCIACKLCEAICPA---QAITIESGPRCHDGTRRTVRY-----------------D 97
              + CI C  C   CP    +A   +              +                  
Sbjct: 705 WETDLCIQCGQCSIACPHSVIRARFYDEARLADPNEPAPPTFKSAPVNARGYPDSRFTLQ 764

Query: 98  IDMIKCIYCGLCQEACP--------VDAIVEGP 122
             +  C  CG+C E CP          AI  GP
Sbjct: 765 FYVEDCTGCGICVEVCPAHSPSRPGTKAINMGP 797


>gi|120405063|ref|YP_954892.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing
           protein [Mycobacterium vanbaalenii PYR-1]
 gi|119957881|gb|ABM14886.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Mycobacterium vanbaalenii PYR-1]
          Length = 1193

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 32/104 (30%), Gaps = 26/104 (25%)

Query: 58  NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY--DIDMI 101
              + CI C  C  +CP                A                 R+   +   
Sbjct: 686 WDPDTCIQCGNCGFVCPHSVIRSKFYDGSQLAGAPADFDSAPLDAVGLPGARFSLQVYTE 745

Query: 102 KCIYCGLCQEACP--------VDAIVEGP-NFEFATETRQELYY 136
            C  CGLC EACP          AI  GP     ATE R+ + +
Sbjct: 746 DCTGCGLCVEACPVVIPGPTATKAINLGPAEPRMATE-RENVRF 788


>gi|261379385|ref|ZP_05983958.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           subflava NJ9703]
 gi|284797832|gb|EFC53179.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           subflava NJ9703]
          Length = 283

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   S           + + +   +C  CGLC   CPVD I
Sbjct: 77  DEAVCIGCTACIRACPVDAIMGASK----------LMHTVISDECTGCGLCVAPCPVDCI 126

Query: 119 VEGP 122
              P
Sbjct: 127 DMVP 130



 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/22 (59%), Positives = 14/22 (63%)

Query: 98  IDMIKCIYCGLCQEACPVDAIV 119
           ID   CI C  C  ACPVDAI+
Sbjct: 76  IDEAVCIGCTACIRACPVDAIM 97


>gi|114319976|ref|YP_741659.1| electron transport complex, RnfABCDGE type, B subunit
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|123127335|sp|Q0AAG8|RNFB_ALHEH RecName: Full=Electron transport complex protein rnfB
 gi|114226370|gb|ABI56169.1| electron transport complex, RnfABCDGE type, B subunit
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 186

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 25/66 (37%), Gaps = 10/66 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C  C   CP  AI   +             + +   +C  CGLC + CPVD
Sbjct: 108 WVDEAVCIGCTRCIQACPVDAILGAAKQ----------MHTVLKGECTGCGLCVDPCPVD 157

Query: 117 AIVEGP 122
            I   P
Sbjct: 158 CIHMVP 163


>gi|225387473|ref|ZP_03757237.1| hypothetical protein CLOSTASPAR_01226 [Clostridium asparagiforme
           DSM 15981]
 gi|225046403|gb|EEG56649.1| hypothetical protein CLOSTASPAR_01226 [Clostridium asparagiforme
           DSM 15981]
          Length = 643

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-DIDMIKCIYCGLCQEACPV 115
            + E  C  C  CE +CP  AI+ E+      G R T R   ++   C  CG C  ACP 
Sbjct: 562 KSDERYCNGCSACEKVCPYGAISYENKEVFDHGIRETRRVAVVNTALCQGCGACTVACPS 621

Query: 116 DAIVEG 121
            A+   
Sbjct: 622 GAMDLQ 627



 Score = 34.7 bits (78), Expect = 4.4,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 25/81 (30%), Gaps = 13/81 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIE--------SGPRCHDGTRRTVRYDIDMIKCIY----- 105
              +C  C +C   CP++    E        S               ID   CI      
Sbjct: 221 DMTKCTGCGVCSEKCPSKKTPSEFNRGLSTRSAIYTPFAQAIPNVPVIDREHCIKFKTGK 280

Query: 106 CGLCQEACPVDAIVEGPNFEF 126
           CG+C++ C   AI      E 
Sbjct: 281 CGVCEKVCAAGAIDYKQQDEI 301


>gi|90412296|ref|ZP_01220301.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Photobacterium profundum 3TCK]
 gi|90326787|gb|EAS43180.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Photobacterium profundum 3TCK]
          Length = 550

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 18/65 (27%), Gaps = 2/65 (3%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
               RC +C  C                      +  RY  D  KC  C  C   CP  A
Sbjct: 477 YEATRCYSCGNC--FECDGCYGACPEEGAILKLGKGNRYKFDYDKCTGCQACMNQCPCHA 534

Query: 118 IVEGP 122
           I   P
Sbjct: 535 IDMLP 539


>gi|307299220|ref|ZP_07579021.1| dihydroorotate dehydrogenase family protein [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306915016|gb|EFN45402.1| dihydroorotate dehydrogenase family protein [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 359

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 12/81 (14%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
            E   ++   +    +R      ++C  C LC  +CP  A++++             + +
Sbjct: 286 EEAVGSAKDQKESFTVRNPVIDHDKCTRCGLCVEVCPYFALSLQE------------KVE 333

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           +D  +C  CGLC+  CPV AI
Sbjct: 334 VDSAECFGCGLCESICPVAAI 354



 Score = 41.6 bits (96), Expect = 0.031,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 14/28 (50%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           ID  KC  CGLC E CP  A+      E
Sbjct: 306 IDHDKCTRCGLCVEVCPYFALSLQEKVE 333


>gi|303325741|ref|ZP_07356184.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Desulfovibrio sp.
           3_1_syn3]
 gi|302863657|gb|EFL86588.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Desulfovibrio sp.
           3_1_syn3]
          Length = 1178

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/144 (20%), Positives = 44/144 (30%), Gaps = 34/144 (23%)

Query: 29  KAKTTINYP--FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA----------- 75
           K   +   P  F    T+   +   A+         CI C  C  +CP            
Sbjct: 651 KLPVSAMDPAGFVPLGTAACEKRGVAINIPEWQVANCIQCCQCSFVCPHAAIRPVLATEA 710

Query: 76  ---QAITIESGPRCHDGTRRTVRYDI--DMIKCIYCGLCQEACP--VDAIVEGP------ 122
               A              + +++ I      C+ CG C + CP    A+V  P      
Sbjct: 711 ELEGAPAGFETKDAMGKELKGLKFRIQVYPEDCLGCGSCADICPAKEKALVMKPLEGQLD 770

Query: 123 ----NFEFATETRQELYYDKERLL 142
               N EFA    +E    K+ LL
Sbjct: 771 AQKANLEFA----EEHISLKDNLL 790


>gi|225017724|ref|ZP_03706916.1| hypothetical protein CLOSTMETH_01653 [Clostridium methylpentosum
           DSM 5476]
 gi|224949517|gb|EEG30726.1| hypothetical protein CLOSTMETH_01653 [Clostridium methylpentosum
           DSM 5476]
          Length = 263

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 29/83 (34%), Gaps = 11/83 (13%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P  K         ++           CI C+ CE  CP  AI +++              
Sbjct: 189 PLSKPVVVICASQQNGKNTRAACTNGCIGCRKCEKTCPYDAIHVDN-----------FLA 237

Query: 97  DIDMIKCIYCGLCQEACPVDAIV 119
            ID  KC  CG C E CPV  I 
Sbjct: 238 RIDYEKCTACGKCVEVCPVSCIH 260



 Score = 37.8 bits (86), Expect = 0.55,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 23/85 (27%), Gaps = 11/85 (12%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
           +E   T                   C+    C   C   A+ +  G              
Sbjct: 116 YEYTGTPSCAGANKYYSGDGQCPYGCLGYGDCTHACIFDALHVIDG-----------VAY 164

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           +D  KC  CG C + CP   I   P
Sbjct: 165 VDPEKCTGCGQCAQECPKGLIDIKP 189


>gi|297619793|ref|YP_003707898.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus voltae A3]
 gi|297378770|gb|ADI36925.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           voltae A3]
          Length = 395

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 1/75 (1%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ++C  C  C   CP  AI + +       +R     D +   CI CG C   CP  A+  
Sbjct: 266 DKCNYCGPCAIKCPTNAINLVNQKGLELPSRTKTDKDPEFRMCIRCGACVMKCPTGALKM 325

Query: 121 GPN-FEFATETRQEL 134
           G    E     R E 
Sbjct: 326 GKITHEGKEYNRIEF 340



 Score = 42.8 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++CI C +C   CP  AI   +G +     +    + +    CI C  C E CP D I
Sbjct: 157 DTDKCIYCTVCAQTCPWNAIY-VAGKKPSKRQKEIKSFTVTEE-CIGCEKCVEVCPGDMI 214



 Score = 40.9 bits (94), Expect = 0.067,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 3/65 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI C  C   CP  A+ +    +     +   R +     C  CG C + CP + +
Sbjct: 304 EFRMCIRCGACVMKCPTGALKM---GKITHEGKEYNRIEFSPALCNQCGECVDVCPQNTL 360

Query: 119 VEGPN 123
               +
Sbjct: 361 KLTGD 365



 Score = 38.5 bits (88), Expect = 0.31,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 11/57 (19%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           C+ C  C  +CP  AI+IE+               ID  KCIYC +C + CP +AI 
Sbjct: 132 CVGCSECVPVCPVDAISIENELAV-----------IDTDKCIYCTVCAQTCPWNAIY 177



 Score = 37.8 bits (86), Expect = 0.45,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 1/77 (1%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID-MIKCIYCGLCQEACP 114
           +P  +  C+ C+ C   CP   I+I       +      +  I     C+ C  C   CP
Sbjct: 84  FPYSKGHCVLCEKCVDACPIDIISIPGKIDKPEKEIAIPQEPIKVTDACVGCSECVPVCP 143

Query: 115 VDAIVEGPNFEFATETR 131
           VDAI            +
Sbjct: 144 VDAISIENELAVIDTDK 160



 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 11/69 (15%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            + C  C  C + CP  A+   +G               +  KC+ CG C  ACP     
Sbjct: 31  FKTCNLCFSCASACPTGALVENNGKLI-----------YNSSKCLKCGNCATACPTGIKK 79

Query: 120 EGPNFEFAT 128
               F ++ 
Sbjct: 80  VDDRFPYSK 88


>gi|148379176|ref|YP_001253717.1| pyruvate-flavodoxin oxidoreductase [Clostridium botulinum A str.
           ATCC 3502]
 gi|153932884|ref|YP_001383553.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum A str.
           ATCC 19397]
 gi|153936760|ref|YP_001387102.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum A str.
           Hall]
 gi|148288660|emb|CAL82741.1| putative pyruvate-flavodoxin oxidoreductase [Clostridium botulinum
           A str. ATCC 3502]
 gi|152928928|gb|ABS34428.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum A str.
           ATCC 19397]
 gi|152932674|gb|ABS38173.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum A str.
           Hall]
          Length = 1172

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 40/126 (31%), Gaps = 24/126 (19%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------ITIESGPRCHDGTRRTV 94
           G+TS   RG   +       ++CI C  C  ICP            E          +  
Sbjct: 668 GTTSYEKRGIAVMIPEWQ-IDKCIQCNQCSYICPHSVIRAYLLNKDEKEKAPSTFETKKA 726

Query: 95  ----------RYDIDMIKCIYCGLCQEACPVD--AIVEGP---NFEFATETRQ--ELYYD 137
                     R  I  + C  CG C + CP    A++        E  +E  +       
Sbjct: 727 AGKGLEELGYRIQISPLDCTGCGNCADVCPAPGKALIMKNAEEQIEMQSENWEFGLNINT 786

Query: 138 KERLLN 143
           KE L++
Sbjct: 787 KENLMD 792


>gi|123406266|ref|XP_001302760.1| Dihydroorotate dehydrogenase family protein [Trichomonas vaginalis
           G3]
 gi|123470791|ref|XP_001318599.1| Dihydroorotate dehydrogenase family protein [Trichomonas vaginalis
           G3]
 gi|121884080|gb|EAX89830.1| Dihydroorotate dehydrogenase family protein [Trichomonas vaginalis
           G3]
 gi|121901362|gb|EAY06376.1| Dihydroorotate dehydrogenase family protein [Trichomonas vaginalis
           G3]
          Length = 811

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 23/81 (28%), Gaps = 8/81 (9%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           K          +        +  C+ C  C   C                     ++ ++
Sbjct: 725 KRVVQRESFDINWTLHAEIDDATCLQCGKCALSCRDN--------SVEAIHLVDGKWKVN 776

Query: 100 MIKCIYCGLCQEACPVDAIVE 120
             +CI C LC   CPV A+  
Sbjct: 777 HDECIGCALCHSVCPVQAMHM 797


>gi|91787512|ref|YP_548464.1| benzoyl-CoA oxygenase, component A [Polaromonas sp. JS666]
 gi|91696737|gb|ABE43566.1| benzoyl-CoA oxygenase, component A [Polaromonas sp. JS666]
          Length = 426

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 11/68 (16%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
           H ++++    E CI C  CEAICP QAIT +S             Y +D  KC  C  C 
Sbjct: 7   HVIKQHLIDPEICIRCNTCEAICPVQAITHDS-----------RNYVVDAEKCNLCMACI 55

Query: 111 EACPVDAI 118
             CP  +I
Sbjct: 56  SPCPTGSI 63



 Score = 37.0 bits (84), Expect = 0.88,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
               ++ ID   CI C  C+  CPV AI  
Sbjct: 7   HVIKQHLIDPEICIRCNTCEAICPVQAITH 36


>gi|220932914|ref|YP_002509822.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Halothermothrix orenii H 168]
 gi|219994224|gb|ACL70827.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Halothermothrix orenii H 168]
          Length = 1179

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 29/90 (32%), Gaps = 18/90 (20%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITI------ESGPRCHDGTRRTV---------- 94
            A+       + CI C  C   CP  AI        E+         +            
Sbjct: 679 IAINVPEWQIDNCIQCNQCAMACPHAAIRPFLLNEEEANKAPEGFETKPAIGKQLKGLQY 738

Query: 95  RYDIDMIKCIYCGLCQEACP--VDAIVEGP 122
           R  +  + C  CG+C E CP    A+V  P
Sbjct: 739 RIQVSPLDCTGCGVCAEVCPAKEKALVMKP 768


>gi|332161837|ref|YP_004298414.1| electron transport complex protein RnfC [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|325666067|gb|ADZ42711.1| electron transport complex protein RnfC [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
          Length = 618

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 3/103 (2%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C LC   CPA  +  +       G       + ++  CI CG C   CP   I  
Sbjct: 375 QSCIRCGLCVDACPAG-LLPQQLYWFSRGEEHEKARNHNIFDCIECGACAYVCP-SNIPL 432

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
              +       + L  + ER      R+E++  R +  +   R
Sbjct: 433 VQYYRQEKAEIRTLDQEAERAAQAKARFEAKQAR-LEREKIAR 474


>gi|318605660|emb|CBY27158.1| electron transport complex protein RnfC [Yersinia enterocolitica
           subsp. palearctica Y11]
          Length = 618

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 3/103 (2%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C LC   CPA  +  +       G       + ++  CI CG C   CP   I  
Sbjct: 375 QSCIRCGLCVDACPAG-LLPQQLYWFSRGEEHEKARNHNIFDCIECGACAYVCP-SNIPL 432

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
              +       + L  + ER      R+E++  R +  +   R
Sbjct: 433 VQYYRQEKAEIRTLDQEAERAAQAKARFEAKQAR-LEREKIAR 474


>gi|311697015|gb|ADP99888.1| protein containing 4Fe-4S ferredoxin, iron-sulfur binding, subgroup
           domains [marine bacterium HP15]
          Length = 637

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 30/98 (30%), Gaps = 9/98 (9%)

Query: 31  KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT 90
           + T+    EK                    ++C  C  C ++CP  A+            
Sbjct: 461 RVTVAAMSEKIEEPIPLPKGAPYGAIEIDSDKCTLCLACVSLCPTGALGDHPD------- 513

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
                       C+ CG+C+  CP  AI   P  + + 
Sbjct: 514 --RPEVQFTENACVQCGICESTCPETAITLKPQLDVSK 549



 Score = 42.0 bits (97), Expect = 0.030,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 18/55 (32%), Gaps = 11/55 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           C  C  +CP +AI                   ID   C  CG C   CP  A+  
Sbjct: 269 CTRCLDVCPTEAIFSFGD-----------HIQIDSDICAGCGSCAAVCPTSAVTM 312


>gi|309790829|ref|ZP_07685373.1| hypothetical protein OSCT_1324 [Oscillochloris trichoides DG6]
 gi|308227116|gb|EFO80800.1| hypothetical protein OSCT_1324 [Oscillochloris trichoides DG6]
          Length = 439

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 11/86 (12%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                  + C  C  C  +CP  A+ I    +   G RR      D   C+ CG+C  AC
Sbjct: 288 WIATIDPQLCRGCGRCVPVCPVNALQIN---QSEVGGRRRRWAVRDADLCLGCGVCYAAC 344

Query: 114 PVDAIVEGPNFEFATETRQELYYDKE 139
              A+   P        R+   +  E
Sbjct: 345 RHGALTMQP--------RERRVFTPE 362


>gi|291563571|emb|CBL42387.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric
           [butyrate-producing bacterium SS3/4]
          Length = 1178

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 30/93 (32%), Gaps = 19/93 (20%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQ-----AITIESGPRCHDGTR---------RT 93
           RG        N  + CI C  C  +CP       A+T E   +   GT+           
Sbjct: 680 RGIAVNVPVWN-PDNCIQCNFCSYVCPHAVIRPVAMTEEEAAKAPAGTKTIPMTGMPEYK 738

Query: 94  VRYDIDMIKCIYCGLCQEACP----VDAIVEGP 122
               I  + C  CG C   CP      A+   P
Sbjct: 739 FAMTISALDCTGCGSCANVCPGKKGEKALTMVP 771


>gi|260778692|ref|ZP_05887584.1| iron-sulfur cluster-binding protein [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260604856|gb|EEX31151.1| iron-sulfur cluster-binding protein [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 553

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 9/75 (12%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
              + C  C  C A+CP++A+  +          ++         C+ CGLC +ACP +A
Sbjct: 415 CESKDCTLCMSCVAVCPSRALHTDG---------QSPSLKFVEQDCVQCGLCTKACPENA 465

Query: 118 IVEGPNFEFATETRQ 132
           +   P   +    RQ
Sbjct: 466 LTMTPRMNWDAAARQ 480



 Score = 40.5 bits (93), Expect = 0.090,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 6/54 (11%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           C+ C   CPA A++ E   +         R +I+   C   G C  ACP +AI 
Sbjct: 186 CERCVDACPAGALSSEGSDKTGH------RIEINPYLCQGVGTCATACPTEAIH 233


>gi|260466533|ref|ZP_05812722.1| formate dehydrogenase, alpha subunit [Mesorhizobium opportunistum
           WSM2075]
 gi|259029682|gb|EEW30969.1| formate dehydrogenase, alpha subunit [Mesorhizobium opportunistum
           WSM2075]
          Length = 970

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T      G          +  D    +C+ CG C +
Sbjct: 182 YFTYDPAQCIVCSRCVRACEEVQGTFALTIEGRGFESRMVAGMHEDFIASECVSCGACVQ 241

Query: 112 ACPVDAIVE 120
           ACP DA+ E
Sbjct: 242 ACPTDALRE 250


>gi|206901791|ref|YP_002251592.1| FdhB-II protein [Dictyoglomus thermophilum H-6-12]
 gi|206740894|gb|ACI19952.1| FdhB-II protein [Dictyoglomus thermophilum H-6-12]
          Length = 559

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 3/102 (2%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV 94
           FE  +   RF  ++          RC+ C+ C  +C   A      E            +
Sbjct: 121 FEFPTYERRFPVDNTHDFIMMDHNRCVLCRRCVRVCSEVAGHFVLGEMERGIDTMIIADM 180

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
              +    C+ CGLC + CP  AI++  +     E + E+ Y
Sbjct: 181 DVPLGNSSCVSCGLCAQVCPTGAIIDKRSSYLGREVQSEIIY 222


>gi|168206256|ref|ZP_02632261.1| nitroreductase family protein [Clostridium perfringens E str.
           JGS1987]
 gi|170662298|gb|EDT14981.1| nitroreductase family protein [Clostridium perfringens E str.
           JGS1987]
          Length = 272

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 15/91 (16%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                  +CI C LC   C    I +  G              I    CI CG C   CP
Sbjct: 1   MMNVDTSKCIGCTLCMQDCIVSDIEMVDGKAH-----------IKNESCIECGHCIAICP 49

Query: 115 VDAIVEGPNFEFA---TETRQELYYDKERLL 142
            +A+ +  +++ +      ++    D +RLL
Sbjct: 50  KEAVSDS-DYDMSKIQEYKKESFDIDSDRLL 79


>gi|110680105|ref|YP_683112.1| iron-sulfur cluster-binding protein, putative [Roseobacter
           denitrificans OCh 114]
 gi|109456221|gb|ABG32426.1| iron-sulfur cluster-binding protein, putative [Roseobacter
           denitrificans OCh 114]
          Length = 651

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 29/102 (28%), Gaps = 13/102 (12%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E             L       + C  C  C ++CP+ A+                +   
Sbjct: 483 EVLELPDASPYGAILV----DTDACTLCLSCVSLCPSGALGDNPD---------NPQLRF 529

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140
               C+ CGLC   CP  AI   P  +       +    +E 
Sbjct: 530 QEDACLQCGLCSNICPEQAITLKPQLDLTDAAFTQKVMHEEE 571



 Score = 38.2 bits (87), Expect = 0.42,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 11/53 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C  +CP  AIT                  ID + C  CG C   CP  AI
Sbjct: 279 CSKCLDVCPTGAITSAGE-----------HVAIDPLICAGCGACSALCPSGAI 320


>gi|127510991|ref|YP_001092188.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella loihica PV-4]
 gi|126636286|gb|ABO21929.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           loihica PV-4]
          Length = 558

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 26/74 (35%), Gaps = 9/74 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + C  C  C + CP QA+T                       C+ CGLC+ ACP   I
Sbjct: 424 NTDNCTLCLSCVSTCPTQALTDGGEKPALY---------FVEQACVQCGLCESACPEKVI 474

Query: 119 VEGPNFEFATETRQ 132
              P   F    RQ
Sbjct: 475 SLTPQINFDATARQ 488



 Score = 37.8 bits (86), Expect = 0.49,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 18/53 (33%), Gaps = 11/53 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C   CPA AI                  +ID   C   G C  ACP  AI
Sbjct: 200 CSRCLNFCPADAIASVDHK-----------IEIDPYLCHGAGSCTNACPTGAI 241


>gi|320354112|ref|YP_004195451.1| electron transfer flavoprotein subunit alpha [Desulfobulbus
           propionicus DSM 2032]
 gi|320122614|gb|ADW18160.1| Electron transfer flavoprotein alpha subunit [Desulfobulbus
           propionicus DSM 2032]
          Length = 396

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 12/66 (18%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 E+C AC +CE  C   AI++E      +              C  CG C E CP
Sbjct: 1   MLIIDSEKCTACGICETSCAFGAISVEVDCAVVN------------ESCTLCGACVENCP 48

Query: 115 VDAIVE 120
           V A+  
Sbjct: 49  VGALRI 54


>gi|238756491|ref|ZP_04617796.1| Electron transport complex protein rnfB [Yersinia ruckeri ATCC
           29473]
 gi|238705278|gb|EEP97690.1| Electron transport complex protein rnfB [Yersinia ruckeri ATCC
           29473]
          Length = 207

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 26/85 (30%), Gaps = 10/85 (11%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
               +     E  CI C  C   CP  AI   +             + +    C  C LC
Sbjct: 104 NPVRKVAFIDESNCIGCTKCIQACPVDAIIGAT----------RAMHTVLPDLCTGCDLC 153

Query: 110 QEACPVDAIVEGPNFEFATETRQEL 134
            + CP D I   P        + +L
Sbjct: 154 VDPCPTDCIEMIPVPMTTANWKWDL 178


>gi|229828064|ref|ZP_04454133.1| hypothetical protein GCWU000342_00113 [Shuttleworthia satelles DSM
           14600]
 gi|229792658|gb|EEP28772.1| hypothetical protein GCWU000342_00113 [Shuttleworthia satelles DSM
           14600]
          Length = 490

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 6/69 (8%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLC 109
                 +C  C  C   CP +AI   + P         + +D      ID  KC+ CG C
Sbjct: 126 MHIDPAKCKECGQCAKNCPYEAIVHLTRPCKRACPVGAITFDEYGFCKIDEEKCVSCGHC 185

Query: 110 QEACPVDAI 118
             +CP  AI
Sbjct: 186 IHSCPFGAI 194



 Score = 35.1 bits (79), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 20/65 (30%), Gaps = 5/65 (7%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTV-----RYDIDMIKCIYCGLCQEACPV 115
             C  C +                  +      +     R  ID  KC  CG C + CP 
Sbjct: 86  PACDDCAMQTYTVTDNCRFCLGKACINSCKFGAISEGDLRMHIDPAKCKECGQCAKNCPY 145

Query: 116 DAIVE 120
           +AIV 
Sbjct: 146 EAIVH 150


>gi|225028913|ref|ZP_03718105.1| hypothetical protein EUBHAL_03202 [Eubacterium hallii DSM 3353]
 gi|224953752|gb|EEG34961.1| hypothetical protein EUBHAL_03202 [Eubacterium hallii DSM 3353]
          Length = 287

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/113 (28%), Positives = 43/113 (38%), Gaps = 22/113 (19%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
               G     +    E++CI C +C   C  +AIT+E G              ID  KC 
Sbjct: 147 ENDVGIKGGMQVAWVEDKCIQCGVCVKACRNEAITLEDGKIS-----------IDTGKCN 195

Query: 105 YCGLCQEACPVDAIVEGPNFEFA-----------TETRQELYYDKERLLNNGD 146
           YCG C ++CPVDA    P +  +            ET        E+LL   D
Sbjct: 196 YCGRCVKSCPVDAYDAQPGYIVSFGGTFGNHISKGETIIPFIESHEKLLKVCD 248


>gi|85059432|ref|YP_455134.1| electron transport complex protein RnfB [Sodalis glossinidius str.
           'morsitans']
 gi|123725402|sp|Q2NSZ6|RNFB_SODGM RecName: Full=Electron transport complex protein rnfB
 gi|84779952|dbj|BAE74729.1| putative iron-sulfur binding protein [Sodalis glossinidius str.
           'morsitans']
          Length = 190

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 22/69 (31%), Gaps = 10/69 (14%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           R     E  CI C  C   CP  AI   +             + +    C  C LC   C
Sbjct: 106 RVAWIDEGNCIGCTKCIQACPVDAIVGAT----------RAVHTVVSDLCTGCDLCVAPC 155

Query: 114 PVDAIVEGP 122
           P + I   P
Sbjct: 156 PTNCIEMRP 164


>gi|89092828|ref|ZP_01165780.1| iron-sulfur cluster-binding protein [Oceanospirillum sp. MED92]
 gi|89082853|gb|EAR62073.1| iron-sulfur cluster-binding protein [Oceanospirillum sp. MED92]
          Length = 555

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 30/82 (36%), Gaps = 9/82 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              +C  C  C A+CP QA+T                 +     C+ CGLC  ACP +AI
Sbjct: 420 DNAKCTLCLSCVAVCPTQALTAGGETPA---------LNFVEQSCVQCGLCDSACPENAI 470

Query: 119 VEGPNFEFATETRQELYYDKER 140
                     E  + +   KE 
Sbjct: 471 QLETRLSLVAERSESICIHKED 492



 Score = 38.2 bits (87), Expect = 0.35,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 25/84 (29%), Gaps = 18/84 (21%)

Query: 42  STSPRFRGEHALRRYPNGEERC-------IACKLCEAICPAQAITIESGPRCHDGTRRTV 94
                       + +    + C         C  C  +CPA AI+  +            
Sbjct: 163 DLPNYIGEFQKPKYFHINNDICAHSSRGQTGCTRCLDVCPADAISSIND----------- 211

Query: 95  RYDIDMIKCIYCGLCQEACPVDAI 118
             +ID   C   G C  ACP  AI
Sbjct: 212 LVNIDPHMCHGAGGCATACPTGAI 235


>gi|94984496|ref|YP_603860.1| 4Fe-4S ferredoxin, iron-sulfur binding [Deinococcus geothermalis
           DSM 11300]
 gi|94554777|gb|ABF44691.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Deinococcus
           geothermalis DSM 11300]
          Length = 334

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 34/99 (34%), Gaps = 16/99 (16%)

Query: 36  YPFEKGS----------TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
            P E+                          P  ++ CI C +C  +CP QAIT E  P 
Sbjct: 224 VPEERTPEEWRWRVRTLKPAPAPDAGVHWPAPLVDDTCIDCPVCANVCPTQAITREQKPE 283

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
                   V+  +++  C  C  C  +CP  AI     +
Sbjct: 284 GG------VQLLLNLSACTGCRACLRSCPPQAIHMQEEW 316



 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 13/62 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           C  C A CP +AI      +            +D  +C  CGLC + CP  A+     ++
Sbjct: 34  CDACHATCPHEAIAFGPLGQS---------IQLDPQRCTGCGLCVQVCPSGAL----EYD 80

Query: 126 FA 127
             
Sbjct: 81  LT 82


>gi|331082469|ref|ZP_08331595.1| pyruvate:ferredoxin oxidoreductase [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330400955|gb|EGG80556.1| pyruvate:ferredoxin oxidoreductase [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 1178

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 28/92 (30%), Gaps = 18/92 (19%)

Query: 58  NGEERCIACKLCEAICPAQ-----AITIESGPRCHDGTR---------RTVRYDIDMIKC 103
              E CI C  C  +CP       A+T        +G +               +    C
Sbjct: 688 WQPENCIQCNRCAYVCPHAVIRPVAMTDAEVAAAPEGMKTLPMTGMADYKFVMTVSAYDC 747

Query: 104 IYCGLCQEACP----VDAIVEGPNFEFATETR 131
             CG C   CP      A+V     E A E +
Sbjct: 748 TGCGSCANVCPGKKGAKALVMANMEENAGEQK 779


>gi|312796966|ref|YP_004029888.1| Ferredoxin [Burkholderia rhizoxinica HKI 454]
 gi|312168741|emb|CBW75744.1| Ferredoxin [Burkholderia rhizoxinica HKI 454]
          Length = 355

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 22/64 (34%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C LC   CP  AI                 + +    C  C LC   CPVD I
Sbjct: 115 DETVCIGCTLCMQACPVDAIVGAPKQ----------LHTVLADWCTGCDLCVAPCPVDCI 164

Query: 119 VEGP 122
              P
Sbjct: 165 EMVP 168



 Score = 38.2 bits (87), Expect = 0.36,   Method: Composition-based stats.
 Identities = 16/28 (57%), Positives = 17/28 (60%)

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           R   R  ID   CI C LC +ACPVDAI
Sbjct: 107 RTRPRAVIDETVCIGCTLCMQACPVDAI 134


>gi|310779384|ref|YP_003967717.1| Cobyrinic acid ac-diamide synthase [Ilyobacter polytropus DSM 2926]
 gi|309748707|gb|ADO83369.1| Cobyrinic acid ac-diamide synthase [Ilyobacter polytropus DSM 2926]
          Length = 286

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 21/118 (17%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           +    L++    + +CI CK C  +C   +I+                 DI+  KC  CG
Sbjct: 54  KNFVGLQKAFLDKSKCIMCKKCYELCKYSSISSN--------------IDINAGKCEGCG 99

Query: 108 LCQEACPVDAIVEGPN----FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161
           LC+  CP  AI            +  +  ++ + K   L  G+    ++V  +   + 
Sbjct: 100 LCEYICPASAITMKDTVIGKLSVSETSFGDMVHAK---LIPGEDASGKLVAEVRKTAK 154


>gi|291280352|ref|YP_003497187.1| NADH-quinone oxidoreductase subunit F [Deferribacter desulfuricans
           SSM1]
 gi|290755054|dbj|BAI81431.1| NADH-quinone oxidoreductase, F subunit [Deferribacter desulfuricans
           SSM1]
          Length = 596

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 10/71 (14%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R    L  +   E+RC  C +C  +CP  AI+ E G              ID  KC+ C 
Sbjct: 535 RECPELIEFVVDEDRCKKCGICFKVCPVGAISWEKGKPA----------YIDKSKCVKCR 584

Query: 108 LCQEACPVDAI 118
            C   CP +AI
Sbjct: 585 ECIVNCPFNAI 595



 Score = 38.9 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 19/51 (37%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           +         I+            + + +D  +C  CG+C + CPV AI  
Sbjct: 517 KYFRHEYEAHIKDRKCPARECPELIEFVVDEDRCKKCGICFKVCPVGAISW 567


>gi|257465877|ref|ZP_05630188.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 1113

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 40/122 (32%), Gaps = 22/122 (18%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-------------QAITIESGP 84
           FE G+++   RG            +CI C  C  +CP               A  +E   
Sbjct: 676 FENGTSAFEKRGVAVDVPLW-DSTKCIQCNQCSYVCPHAVIRPFLISEEEKSASPVEFAT 734

Query: 85  RCHDGTRRT---VRYDIDMIKCIYCGLCQEACPVD--AIVEGPN---FEFATETRQELYY 136
               G        R  +  + C+ CG C   CP    AI   P     +   + + +  +
Sbjct: 735 LKAMGKGLDGLTYRIQVSPLDCVGCGSCVNVCPAPGKAITMQPIATSIDAEEDKKADYLF 794

Query: 137 DK 138
           +K
Sbjct: 795 NK 796


>gi|229131527|ref|ZP_04260415.1| formate dehydrogenase [Bacillus cereus BDRD-ST196]
 gi|228651927|gb|EEL07876.1| formate dehydrogenase [Bacillus cereus BDRD-ST196]
          Length = 980

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +             R +
Sbjct: 125 KYPYE--PKVSACEVDTSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWSLDRPRVI 182

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
             +   I+   C+ CG C   CP +A++E
Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211



 Score = 39.7 bits (91), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-------TVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKVHNTVHMMEIEEQKYPYEPKVSACEVDTSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|229165530|ref|ZP_04293309.1| formate dehydrogenase [Bacillus cereus AH621]
 gi|228617932|gb|EEK74978.1| formate dehydrogenase [Bacillus cereus AH621]
          Length = 980

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +             R +
Sbjct: 125 KYPYE--PKVSACEVDTSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWSLDRPRVI 182

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
             +   I+   C+ CG C   CP +A++E
Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211



 Score = 39.7 bits (91), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-------TVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKVHNTVHMMEIEEQKYPYEPKVSACEVDTSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|134298308|ref|YP_001111804.1| CoB--CoM heterodisulfide reductase [Desulfotomaculum reducens MI-1]
 gi|134051008|gb|ABO48979.1| CoB--CoM heterodisulfide reductase [Desulfotomaculum reducens MI-1]
          Length = 722

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/119 (21%), Positives = 39/119 (32%), Gaps = 12/119 (10%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR----- 91
           P E      +   + A+ +       CI C  C   CP  A   E     + G R     
Sbjct: 287 PQEVHILFLKHGRQEAIDKGFAESLYCINCGSCLNFCPIYAEIGEKYGYKYLGGRGLVFT 346

Query: 92  -----RTVRYDIDMIKCIYCGLCQEACPVDAIV--EGPNFEFATETRQELYYDKERLLN 143
                     +  +  CI C  C+ +CPV         N       ++ L + KER+L 
Sbjct: 347 AFHGDLQKTVESGLSLCIGCQKCKNSCPVQMNTPEMLKNLRQEQVQQEGLGWKKERMLA 405


>gi|332880667|ref|ZP_08448341.1| electron transfer flavoprotein FAD-binding domain protein
           [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332681655|gb|EGJ54578.1| electron transfer flavoprotein FAD-binding domain protein
           [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 404

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 12/64 (18%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           +C++C +C   C   AI +   P                  C  CG C +ACPV A V  
Sbjct: 17  QCVSCGICAESCAYGAIRMGDFPEVD------------EENCRLCGGCVQACPVGAWVMQ 64

Query: 122 PNFE 125
              E
Sbjct: 65  RQDE 68



 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 11/45 (24%), Positives = 17/45 (37%)

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
                 +     +   +C+ CG+C E+C   AI  G   E   E 
Sbjct: 1   MKMNKDKDFILQLQAGQCVSCGICAESCAYGAIRMGDFPEVDEEN 45


>gi|229056364|ref|ZP_04195780.1| formate dehydrogenase [Bacillus cereus AH603]
 gi|228720969|gb|EEL72514.1| formate dehydrogenase [Bacillus cereus AH603]
          Length = 980

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +             R +
Sbjct: 125 KYPYE--PKVSACEVDTSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWSLDRPRVI 182

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
             +   I+   C+ CG C   CP +A++E
Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211



 Score = 39.7 bits (91), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-------TVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKVHNTVHMMEIEEQKYPYEPKVSACEVDTSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|48477627|ref|YP_023333.1| putative ATPase RIL [Picrophilus torridus DSM 9790]
 gi|48430275|gb|AAT43140.1| RNase L inhibitor homolog, predicted ATPase [Picrophilus torridus
           DSM 9790]
          Length = 588

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 1/65 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +RC   K C   C      + SG +  +      +  I    CI CG+C   CP +AI
Sbjct: 7   DRDRCHP-KKCNHECRYYCPPVRSGSKTIEFPDVDAQPVITENLCIGCGICVRRCPFNAI 65

Query: 119 VEGPN 123
                
Sbjct: 66  KIVTI 70


>gi|294677266|ref|YP_003577881.1| pyridine nucleotide-disulfide oxidoreductase family protein
           [Rhodobacter capsulatus SB 1003]
 gi|294476086|gb|ADE85474.1| pyridine nucleotide-disulfide oxidoreductase family protein
           [Rhodobacter capsulatus SB 1003]
          Length = 547

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 24/70 (34%), Gaps = 3/70 (4%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           R      +RC +C  C       A   E     H   R    Y I++ KC  C  C   C
Sbjct: 476 REARYEAQRCYSCGQCYECDNCFAACPEQAIVKHGPGRG---YRIELTKCTGCASCVAQC 532

Query: 114 PVDAIVEGPN 123
           P  A+   P 
Sbjct: 533 PCGAMELMPE 542


>gi|78778017|ref|YP_394332.1| NADH dehydrogenase subunit G [Sulfurimonas denitrificans DSM 1251]
 gi|78498557|gb|ABB45097.1| Ferredoxin [Sulfurimonas denitrificans DSM 1251]
          Length = 750

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 25/74 (33%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
            + R              CI C+ C  +C           +        V  + +++ C 
Sbjct: 133 DQLRPIKHWGLIDYEASLCIMCEKCVHVCNEVIGDDAIEIKVGGYNSIIVPKNSELLDCT 192

Query: 105 YCGLCQEACPVDAI 118
           +CG C   CPV A+
Sbjct: 193 FCGECIAVCPVGAL 206


>gi|163938512|ref|YP_001643396.1| formate dehydrogenase, alpha subunit [Bacillus weihenstephanensis
           KBAB4]
 gi|163860709|gb|ABY41768.1| formate dehydrogenase, alpha subunit [Bacillus weihenstephanensis
           KBAB4]
          Length = 980

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +             R +
Sbjct: 125 KYPYE--PKVSACEVDTSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWSLDRPRVI 182

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
             +   I+   C+ CG C   CP +A++E
Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211



 Score = 39.7 bits (91), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-------TVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKVHNTVHMMEIEEQKYPYEPKVSACEVDTSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|315917034|ref|ZP_07913274.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|313690909|gb|EFS27744.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 1115

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 40/122 (32%), Gaps = 22/122 (18%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-------------QAITIESGP 84
           FE G+++   RG            +CI C  C  +CP               A  +E   
Sbjct: 678 FENGTSAFEKRGVAVDVPLW-DSTKCIQCNQCSYVCPHAVIRPFLISEEEKSASPVEFAT 736

Query: 85  RCHDGTRRT---VRYDIDMIKCIYCGLCQEACPVD--AIVEGPN---FEFATETRQELYY 136
               G        R  +  + C+ CG C   CP    AI   P     +   + + +  +
Sbjct: 737 LKAMGKGLDGLTYRIQVSPLDCVGCGSCVNVCPAPGKAITMQPIATSIDAEEDKKADYLF 796

Query: 137 DK 138
           +K
Sbjct: 797 NK 798


>gi|307596381|ref|YP_003902698.1| methyl-viologen-reducing hydrogenase subunit delta [Vulcanisaeta
           distributa DSM 14429]
 gi|307551582|gb|ADN51647.1| methyl-viologen-reducing hydrogenase delta subunit [Vulcanisaeta
           distributa DSM 14429]
          Length = 1129

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 20/62 (32%), Gaps = 10/62 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              +C  C LC   CP  AI    G             +     C  CG C   CP DAI
Sbjct: 917 DWSKCTKCGLCIKACPYGAIRGVPGK----------WIEHIPAACQGCGACVAECPQDAI 966

Query: 119 VE 120
             
Sbjct: 967 TL 968



 Score = 38.2 bits (87), Expect = 0.36,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 18/49 (36%)

Query: 74  PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            A A            T+       D  KC  CGLC +ACP  AI   P
Sbjct: 892 YAAASRALMMLAQGYVTKEPFIPKFDWSKCTKCGLCIKACPYGAIRGVP 940



 Score = 34.7 bits (78), Expect = 4.7,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 28/92 (30%), Gaps = 14/92 (15%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP-------RCHDGTRRTVRY 96
           SP       L +     + C  C  CE +CP    +                       Y
Sbjct: 86  SPGDFKARILVKPRYVTDDCTKCGQCEDVCPVIVPSEFEAGIGARKAIYLPFPQAEPGIY 145

Query: 97  DIDMIKCIY-------CGLCQEACPVDAIVEG 121
            +D+  C+        C  C +AC  +AI+  
Sbjct: 146 MLDIDHCLNKPPNYFPCDRCAKACDRNAIIYT 177


>gi|269104601|ref|ZP_06157297.1| formate dehydrogenase-O major subunit [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268161241|gb|EEZ39738.1| formate dehydrogenase-O major subunit [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 1376

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 9/69 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIE---------SGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
              RCI+C  C   C  +A+            +  +  +        ++   KC+ CG C
Sbjct: 607 DANRCISCGQCVQACNEKAVHGVLSFMKNADGTPAQRPECRPGFDGVNMGDSKCVQCGAC 666

Query: 110 QEACPVDAI 118
            +ACP  A+
Sbjct: 667 VQACPTGAL 675



 Score = 34.3 bits (77), Expect = 5.6,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 6/71 (8%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P ++    P F G +       G+ +C+ C  C   CP  A+  +           T  
Sbjct: 639 TPAQRPECRPGFDGVNM------GDSKCVQCGACVQACPTGALVDKRDKAQGRIELLTPV 692

Query: 96  YDIDMIKCIYC 106
             I     I C
Sbjct: 693 ETICTYCGIGC 703


>gi|238919826|ref|YP_002933341.1| pyruvate:ferredoxin [Edwardsiella ictaluri 93-146]
 gi|238869395|gb|ACR69106.1| pyruvate:ferredoxin [Edwardsiella ictaluri 93-146]
          Length = 1176

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 35/135 (25%), Gaps = 32/135 (23%)

Query: 31  KTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI-------- 80
             +   P        +   +   A          C  C  C A CP  AI          
Sbjct: 655 PVSAFPPDGTWPVGTTRWEKRNIAETIPIWQPALCTQCNHCVAACPHAAIRAKVVTPTAL 714

Query: 81  ----------ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP--------VDAIVEGP 122
                     E   R   G R      +    C  C LC   CP        V AI   P
Sbjct: 715 EHAPATLESLEVRARDLRGERY--VLQVAPEDCTGCNLCVTVCPAADRQDPDVKAINMQP 772

Query: 123 NFEFATETRQELYYD 137
             E     R++ +YD
Sbjct: 773 RLEN--LAREKAHYD 785


>gi|218782911|ref|YP_002434229.1| ferredoxin [Desulfatibacillum alkenivorans AK-01]
 gi|218764295|gb|ACL06761.1| Heterodisulfide reductase, subunit A-like protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 1076

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 24/75 (32%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G    R   + E  CI C LC  +C     +  +        +    + +    C  CG 
Sbjct: 110 GIEKSRFGEDNENDCILCGLCVRVCEKMGNSAITLTGRGLEMKVDTPFSVQSDICKGCGA 169

Query: 109 CQEACPVDAIVEGPN 123
           C+  CP   I     
Sbjct: 170 CEFICPTGHIKLENI 184



 Score = 40.9 bits (94), Expect = 0.069,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 9/62 (14%)

Query: 59   GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              + C  CK+C +ICP  A              +T + +I    C  CGLC  +C   AI
Sbjct: 1009 DSQFCSGCKVCVSICPYSAPLFNE---------KTGKAEIQSTLCKGCGLCVASCRSGAI 1059

Query: 119  VE 120
              
Sbjct: 1060 HL 1061


>gi|110803341|ref|YP_698302.1| nitroreductase family protein [Clostridium perfringens SM101]
 gi|110683842|gb|ABG87212.1| nitroreductase family protein [Clostridium perfringens SM101]
          Length = 272

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 15/91 (16%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                  +CI C LC   C    I +  G              I    CI CG C   CP
Sbjct: 1   MMNVDTSKCIGCTLCMQDCIVSDIEMVDGKAH-----------IKNESCIECGHCIAICP 49

Query: 115 VDAIVEGPNFEFA---TETRQELYYDKERLL 142
            +A+ +  +++ +      ++    D +RLL
Sbjct: 50  KEAVSDS-DYDMSKIQEYKKESFDIDSDRLL 79


>gi|238792134|ref|ZP_04635769.1| Electron transport complex protein rnfB [Yersinia intermedia ATCC
           29909]
 gi|238728371|gb|EEQ19890.1| Electron transport complex protein rnfB [Yersinia intermedia ATCC
           29909]
          Length = 207

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 24/78 (30%), Gaps = 10/78 (12%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C  C   CP  AI   +             + +    C  C LC   CP D
Sbjct: 111 FIDEANCIGCTKCIQACPVDAIVGAT----------RAMHTVLPDLCTGCDLCVAPCPTD 160

Query: 117 AIVEGPNFEFATETRQEL 134
            I   P        + +L
Sbjct: 161 CIEMIPVAATTANWKWDL 178


>gi|323268765|gb|EGA52224.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
          Length = 655

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +        +  CI CG C   CP  
Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
                 N       RQ      E+   N  R E +       ++  R
Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459


>gi|323242646|gb|EGA26667.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
          Length = 673

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +        +  CI CG C   CP  
Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
                 N       RQ      E+   N  R E +       ++  R
Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459


>gi|323232168|gb|EGA16274.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
          Length = 561

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +        +  CI CG C   CP  
Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
                 N       RQ      E+   N  R E +       ++  R
Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459


>gi|323224588|gb|EGA08865.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323254810|gb|EGA38608.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
          Length = 552

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +        +  CI CG C   CP  
Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
                 N       RQ      E+   N  R E +       ++  R
Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459


>gi|323217293|gb|EGA02013.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
          Length = 579

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +        +  CI CG C   CP  
Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
                 N       RQ      E+   N  R E +       ++  R
Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459


>gi|323211028|gb|EFZ95887.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323237790|gb|EGA21849.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323266729|gb|EGA50216.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
          Length = 595

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +        +  CI CG C   CP  
Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
                 N       RQ      E+   N  R E +       ++  R
Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459


>gi|323205623|gb|EFZ90586.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
          Length = 590

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +        +  CI CG C   CP  
Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
                 N       RQ      E+   N  R E +       ++  R
Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459


>gi|323198190|gb|EFZ83299.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
          Length = 557

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +        +  CI CG C   CP  
Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
                 N       RQ      E+   N  R E +       ++  R
Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459


>gi|322680007|gb|EFY76046.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
          Length = 673

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +        +  CI CG C   CP  
Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
                 N       RQ      E+   N  R E +       ++  R
Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459


>gi|322677330|gb|EFY73394.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
          Length = 735

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +        +  CI CG C   CP  
Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
                 N       RQ      E+   N  R E +       ++  R
Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459


>gi|322667964|gb|EFY64124.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
          Length = 582

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +        +  CI CG C   CP  
Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
                 N       RQ      E+   N  R E +       ++  R
Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459


>gi|322665219|gb|EFY61407.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|323194067|gb|EFZ79266.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323202876|gb|EFZ87911.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
          Length = 642

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +        +  CI CG C   CP  
Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
                 N       RQ      E+   N  R E +       ++  R
Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459


>gi|322658697|gb|EFY54955.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
          Length = 570

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +        +  CI CG C   CP  
Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
                 N       RQ      E+   N  R E +       ++  R
Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459


>gi|322650862|gb|EFY47253.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
          Length = 559

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +        +  CI CG C   CP  
Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
                 N       RQ      E+   N  R E +       ++  R
Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459


>gi|322646614|gb|EFY43122.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
          Length = 565

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +        +  CI CG C   CP  
Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
                 N       RQ      E+   N  R E +       ++  R
Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459


>gi|322641119|gb|EFY37762.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
          Length = 644

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +        +  CI CG C   CP  
Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
                 N       RQ      E+   N  R E +       ++  R
Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459


>gi|322622924|gb|EFY19766.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
          Length = 586

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +        +  CI CG C   CP  
Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
                 N       RQ      E+   N  R E +       ++  R
Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459


>gi|322620523|gb|EFY17385.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322685564|gb|EFY81560.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
          Length = 569

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +        +  CI CG C   CP  
Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
                 N       RQ      E+   N  R E +       ++  R
Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459


>gi|322616074|gb|EFY12990.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322628769|gb|EFY25554.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322631479|gb|EFY28237.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322638814|gb|EFY35509.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322654536|gb|EFY50857.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322671624|gb|EFY67745.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|323221947|gb|EGA06338.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323234339|gb|EGA18426.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323260352|gb|EGA43970.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
          Length = 562

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +        +  CI CG C   CP  
Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
                 N       RQ      E+   N  R E +       ++  R
Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459


>gi|320086067|emb|CBY95841.1| Electron transport complex protein rnfC [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 642

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +        +  CI CG C   CP  
Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
                 N       RQ      E+   N  R E +       ++  R
Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459


>gi|313889048|ref|ZP_07822706.1| 4Fe-4S binding domain protein [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312844921|gb|EFR32324.1| 4Fe-4S binding domain protein [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 501

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 6/66 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQEA 112
            +++C+ C  C   CP  AI     P                R +ID  KC+ CG C   
Sbjct: 146 DKDKCVRCGRCHDACPYSAIVKYERPCAAACGVDAISSDEFGRAEIDHDKCVACGRCIAE 205

Query: 113 CPVDAI 118
           CP  AI
Sbjct: 206 CPFGAI 211



 Score = 41.6 bits (96), Expect = 0.041,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 14/84 (16%)

Query: 38  FEKGSTSPRFRGEHAL-RRYPNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTV 94
           +EK   +    G  A   +     + C  C    C  +CP  AI++              
Sbjct: 93  YEKPLINVIKFGCEACPTKAYYTTDNCRKCLAHPCINVCPVNAISMGKD----------- 141

Query: 95  RYDIDMIKCIYCGLCQEACPVDAI 118
           R  ID  KC+ CG C +ACP  AI
Sbjct: 142 RTIIDKDKCVRCGRCHDACPYSAI 165


>gi|296132692|ref|YP_003639939.1| NIL domain protein [Thermincola sp. JR]
 gi|296031270|gb|ADG82038.1| NIL domain protein [Thermincola potens JR]
          Length = 137

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 9/65 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +RC  C  C ++CP  A+ I          R ++    D  KCI CGLC +ACPV AI
Sbjct: 80  DVDRCTHCGHCTSLCPVGALYII---------RPSMEVAFDEEKCIVCGLCLKACPVKAI 130

Query: 119 VEGPN 123
               N
Sbjct: 131 ELNFN 135


>gi|238911689|ref|ZP_04655526.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
          Length = 644

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +        +  CI CG C   CP  
Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
                 N       RQ      E+   N  R E +       ++  R
Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459


>gi|260587961|ref|ZP_05853874.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Blautia hansenii
           DSM 20583]
 gi|260541488|gb|EEX22057.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Blautia hansenii
           DSM 20583]
          Length = 1188

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 28/92 (30%), Gaps = 18/92 (19%)

Query: 58  NGEERCIACKLCEAICPAQ-----AITIESGPRCHDGTR---------RTVRYDIDMIKC 103
              E CI C  C  +CP       A+T        +G +               +    C
Sbjct: 698 WQPENCIQCNRCAYVCPHAVIRPVAMTDAEVAAAPEGMKTLPMTGMADYKFVMTVSAYDC 757

Query: 104 IYCGLCQEACP----VDAIVEGPNFEFATETR 131
             CG C   CP      A+V     E A E +
Sbjct: 758 TGCGSCANVCPGKKGAKALVMANMEENAGEQK 789


>gi|224584034|ref|YP_002637832.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|254807932|sp|C0Q508|RNFC_SALPC RecName: Full=Electron transport complex protein rnfC
 gi|224468561|gb|ACN46391.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 704

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +        +  CI CG C   CP  
Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
                 N       RQ      E+   N  R E +       ++  R
Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459


>gi|207857039|ref|YP_002243690.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|226735450|sp|B5QV02|RNFC_SALEP RecName: Full=Electron transport complex protein rnfC
 gi|206708842|emb|CAR33172.1| Electron transport complex protein [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
          Length = 704

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +        +  CI CG C   CP  
Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
                 N       RQ      E+   N  R E +       ++  R
Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459


>gi|205352830|ref|YP_002226631.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|226735451|sp|B5RAK2|RNFC_SALG2 RecName: Full=Electron transport complex protein rnfC
 gi|205272611|emb|CAR37520.1| putative electron transport complex protein [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|326627901|gb|EGE34244.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 673

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +        +  CI CG C   CP  
Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
                 N       RQ      E+   N  R E +       ++  R
Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459


>gi|168819208|ref|ZP_02831208.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205343902|gb|EDZ30666.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
          Length = 704

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +        +  CI CG C   CP  
Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
                 N       RQ      E+   N  R E +       ++  R
Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459


>gi|168463131|ref|ZP_02697062.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|195633861|gb|EDX52213.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
          Length = 735

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +        +  CI CG C   CP  
Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
                 N       RQ      E+   N  R E +       ++  R
Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459


>gi|168264620|ref|ZP_02686593.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|200390674|ref|ZP_03217285.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|199603119|gb|EDZ01665.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205346950|gb|EDZ33581.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
          Length = 735

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +        +  CI CG C   CP  
Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
                 N       RQ      E+   N  R E +       ++  R
Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459


>gi|194443713|ref|YP_002040706.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|226735453|sp|B4T594|RNFC_SALNS RecName: Full=Electron transport complex protein rnfC
 gi|194402376|gb|ACF62598.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
          Length = 735

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +        +  CI CG C   CP  
Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
                 N       RQ      E+   N  R E +       ++  R
Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459


>gi|168240973|ref|ZP_02665905.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194448184|ref|YP_002045495.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|226735452|sp|B4THD4|RNFC_SALHS RecName: Full=Electron transport complex protein rnfC
 gi|194406488|gb|ACF66707.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|205339389|gb|EDZ26153.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
          Length = 735

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +        +  CI CG C   CP  
Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
                 N       RQ      E+   N  R E +       ++  R
Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459


>gi|204927691|ref|ZP_03218892.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|204323033|gb|EDZ08229.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
          Length = 729

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +        +  CI CG C   CP  
Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
                 N       RQ      E+   N  R E +       ++  R
Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459


>gi|197250222|ref|YP_002146588.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|226735448|sp|B5F6J0|RNFC_SALA4 RecName: Full=Electron transport complex protein rnfC
 gi|197213925|gb|ACH51322.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
          Length = 735

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +        +  CI CG C   CP  
Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
                 N       RQ      E+   N  R E +       ++  R
Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459


>gi|168235530|ref|ZP_02660588.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194734341|ref|YP_002114470.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|226735455|sp|B4TV17|RNFC_SALSV RecName: Full=Electron transport complex protein rnfC
 gi|194709843|gb|ACF89064.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197291094|gb|EDY30447.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 732

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +        +  CI CG C   CP  
Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
                 N       RQ      E+   N  R E +       ++  R
Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459


>gi|168229832|ref|ZP_02654890.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|194470158|ref|ZP_03076142.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|194456522|gb|EDX45361.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|205335440|gb|EDZ22204.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
          Length = 735

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +        +  CI CG C   CP  
Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
                 N       RQ      E+   N  R E +       ++  R
Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459


>gi|198244954|ref|YP_002215678.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|226735449|sp|B5FIE7|RNFC_SALDC RecName: Full=Electron transport complex protein rnfC
 gi|197939470|gb|ACH76803.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|326623424|gb|EGE29769.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
          Length = 704

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +        +  CI CG C   CP  
Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
                 N       RQ      E+   N  R E +       ++  R
Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459


>gi|167551572|ref|ZP_02345326.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205323654|gb|EDZ11493.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
          Length = 735

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +        +  CI CG C   CP  
Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
                 N       RQ      E+   N  R E +       ++  R
Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459


>gi|197265683|ref|ZP_03165757.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197243938|gb|EDY26558.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
          Length = 735

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +        +  CI CG C   CP  
Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
                 N       RQ      E+   N  R E +       ++  R
Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459


>gi|121611067|ref|YP_998874.1| dihydropyrimidine dehydrogenase [Verminephrobacter eiseniae EF01-2]
 gi|121555707|gb|ABM59856.1| dihydroorotate dehydrogenase family protein [Verminephrobacter
           eiseniae EF01-2]
          Length = 436

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 6/63 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117
            +  CI C  C A+C   A    +            R+ +   +C+ C LC   CPV   
Sbjct: 342 DQAACIRCGRCHAVCEDSAHQAITAMVDGV-----RRFQVKEEECVGCNLCASICPVPDC 396

Query: 118 IVE 120
           I  
Sbjct: 397 ITM 399


>gi|62180045|ref|YP_216462.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|75483500|sp|Q57PI0|RNFC_SALCH RecName: Full=Electron transport complex protein rnfC
 gi|62127678|gb|AAX65381.1| putative respiratory-chain NADH dehydrogenase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|322714515|gb|EFZ06086.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
          Length = 704

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +        +  CI CG C   CP  
Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
                 N       RQ      E+   N  R E +       ++  R
Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459


>gi|56413574|ref|YP_150649.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197362498|ref|YP_002142135.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|81360680|sp|Q5PIB9|RNFC_SALPA RecName: Full=Electron transport complex protein rnfC
 gi|226735454|sp|B5BKB2|RNFC_SALPK RecName: Full=Electron transport complex protein rnfC
 gi|56127831|gb|AAV77337.1| putative NADH reducing dehydrogenase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197093975|emb|CAR59471.1| putative NADH reducing dehydrogenase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
          Length = 735

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +        +  CI CG C   CP  
Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
                 N       RQ      E+   N  R E +       ++  R
Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459


>gi|29141784|ref|NP_805126.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213051629|ref|ZP_03344507.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
 gi|213425981|ref|ZP_03358731.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|213649168|ref|ZP_03379221.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213855037|ref|ZP_03383277.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|29137412|gb|AAO68975.1| putative NADH reducing dehydrogenase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
          Length = 673

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +        +  CI CG C   CP  
Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
                 N       RQ      E+   N  R E +       ++  R
Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459


>gi|16764805|ref|NP_460420.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167994288|ref|ZP_02575380.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|24638187|sp|Q8ZPM2|RNFC_SALTY RecName: Full=Electron transport complex protein rnfC
 gi|16419978|gb|AAL20379.1| putative respiratory-chain NADH dehydrogenase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|205327844|gb|EDZ14608.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261246661|emb|CBG24471.1| Electron transport complex protein rnfC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267993347|gb|ACY88232.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301157990|emb|CBW17485.1| Electron transport complex protein rnfC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312912440|dbj|BAJ36414.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321224076|gb|EFX49139.1| Electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323129727|gb|ADX17157.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332988342|gb|AEF07325.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 735

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +        +  CI CG C   CP  
Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
                 N       RQ      E+   N  R E +       ++  R
Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459


>gi|16760456|ref|NP_456073.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|25330737|pir||AE0692 probable NADH reducing dehydrogenase STY1665 [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16502752|emb|CAD01910.1| putative NADH reducing dehydrogenase [Salmonella enterica subsp.
           enterica serovar Typhi]
          Length = 673

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +        +  CI CG C   CP  
Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
                 N       RQ      E+   N  R E +       ++  R
Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459


>gi|291617337|ref|YP_003520079.1| RnfC [Pantoea ananatis LMG 20103]
 gi|291152367|gb|ADD76951.1| RnfC [Pantoea ananatis LMG 20103]
          Length = 667

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 3/110 (2%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                 E+ CI C  C   CPA+ +  +       G     R    +  CI CG C   C
Sbjct: 368 MGNDEQEQSCIRCSACADACPAKLLPQQLYWYSKGGDHDKAR-AHHIDDCIECGACAYVC 426

Query: 114 PVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
           P   I     +       + +  + +R L    R+E+   R +  +   R
Sbjct: 427 P-SNIPLVQYYRQEKAELRAIDLEAKRTLEAKARFEARQAR-LEREKQAR 474


>gi|270297046|ref|ZP_06203245.1| NADH:ubiquinone oxidoreductase [Bacteroides sp. D20]
 gi|270273033|gb|EFA18896.1| NADH:ubiquinone oxidoreductase [Bacteroides sp. D20]
          Length = 588

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 35/89 (39%), Gaps = 5/89 (5%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVR 95
           PF  G  SP  R            ++CI C+ CE++C   Q +      R    T     
Sbjct: 131 PFNGGELSP--RKREVTSSIVRNMDKCIFCRRCESVCNDVQTVGALGAIRRGFNTTIAPA 188

Query: 96  YDIDMIK--CIYCGLCQEACPVDAIVEGP 122
           +D  M    C YCG C   CPV A+ E  
Sbjct: 189 FDKMMTDSECTYCGQCVAVCPVGALTERD 217



 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 5/67 (7%)

Query: 52  ALRRYPNGEERCIACKLCEAICPA-----QAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
            L  +PN    C  C  CE    A     + +    G         T     +M KCI+C
Sbjct: 99  ILSDHPNDCLTCPKCGNCELQTLALRFNIRTMPFNGGELSPRKREVTSSIVRNMDKCIFC 158

Query: 107 GLCQEAC 113
             C+  C
Sbjct: 159 RRCESVC 165


>gi|257063355|ref|YP_003143027.1| NADH:ubiquinone oxidoreductase chain I-like protein [Slackia
           heliotrinireducens DSM 20476]
 gi|256791008|gb|ACV21678.1| NADH:ubiquinone oxidoreductase chain I-like protein [Slackia
           heliotrinireducens DSM 20476]
          Length = 401

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 6/60 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C +CK+C   CP  AI          G    V       +C++CGLCQ+ CP  AI
Sbjct: 298 DFNACKSCKMCAVFCPTGAICKYRDENGVAGIEHYV------AECVHCGLCQDICPAGAI 351



 Score = 42.4 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 11/53 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C   C + AI++E G            + ++   C+ CG C   CP  A+
Sbjct: 43  CSRCADACTSGAISLEHGE-----------WSMNPDLCVGCGTCATVCPTCAL 84


>gi|229010017|ref|ZP_04167231.1| formate dehydrogenase [Bacillus mycoides DSM 2048]
 gi|228751150|gb|EEM00962.1| formate dehydrogenase [Bacillus mycoides DSM 2048]
          Length = 980

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +             R +
Sbjct: 125 KYPYE--PKVSACEVDTSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWSLDRPRVI 182

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
             +   I+   C+ CG C   CP +A++E
Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211



 Score = 39.7 bits (91), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-------TVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKVHNTVHMMEIEEQKYPYEPKVSACEVDTSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|229015909|ref|ZP_04172873.1| formate dehydrogenase [Bacillus cereus AH1273]
 gi|229022131|ref|ZP_04178682.1| formate dehydrogenase [Bacillus cereus AH1272]
 gi|228739132|gb|EEL89577.1| formate dehydrogenase [Bacillus cereus AH1272]
 gi|228745366|gb|EEL95404.1| formate dehydrogenase [Bacillus cereus AH1273]
          Length = 971

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +             R +
Sbjct: 116 KYPYE--PKVSACEVDTSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWSLDRPRVI 173

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
             +   I+   C+ CG C   CP +A++E
Sbjct: 174 WDNGVSINDSSCVSCGQCVTVCPCNALME 202



 Score = 39.7 bits (91), Expect = 0.12,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-------TVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 82  RILENHLLYCTVCDNNNGNCKVHNTVHMMEIEEQKYPYEPKVSACEVDTSHPFYRYDPNQ 141

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 142 CIACGQCVEVC 152


>gi|220905127|ref|YP_002480439.1| Cobyrinic acid ac-diamide synthase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
 gi|219869426|gb|ACL49761.1| Cobyrinic acid ac-diamide synthase [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 306

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 14/94 (14%)

Query: 34  INYPFEKGSTSPRFRGEHALR---RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT 90
           ++ P       P+ R E A           + C  C  C  +C   A++ E         
Sbjct: 40  VDVPDLHIIFKPQVRKEQAFISGNTAVINRQACTLCGRCMDLCRFGAVSREGE------- 92

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
                Y ID + C  CG+C + CP  A+      
Sbjct: 93  ----FYHIDALDCEGCGVCHKLCPAGAVEFPQRH 122


>gi|254412467|ref|ZP_05026241.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Microcoleus
           chthonoplastes PCC 7420]
 gi|196180777|gb|EDX75767.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Microcoleus
           chthonoplastes PCC 7420]
          Length = 1204

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 27/91 (29%), Gaps = 16/91 (17%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPR 85
              T+   +   AL       + C+ C  C  +CP                A        
Sbjct: 670 PTGTTKWEKRNVALEVPVWDPDVCVQCGKCVMVCPHAVIRGKSYDSQVLENAPDSFKSTD 729

Query: 86  CHDGTRRTVRYDIDM--IKCIYCGLCQEACP 114
             D      ++ I +    C  CG+C + CP
Sbjct: 730 TRDKEYGGQKFTIQVAVEDCTGCGICVDVCP 760


>gi|189461827|ref|ZP_03010612.1| hypothetical protein BACCOP_02493 [Bacteroides coprocola DSM 17136]
 gi|189431421|gb|EDV00406.1| hypothetical protein BACCOP_02493 [Bacteroides coprocola DSM 17136]
          Length = 1182

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 27/81 (33%), Gaps = 15/81 (18%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG  A     N  E CI C  C  +CP                A               T
Sbjct: 676 RGVAAFVPEWN-PETCIQCNKCAYVCPHAAIRPFVLDANEQAGANFATLKAVGKQFDGMT 734

Query: 94  VRYDIDMIKCIYCGLCQEACP 114
            R  +D++ C+ CG C + CP
Sbjct: 735 FRVQVDVMDCLGCGNCADVCP 755



 Score = 33.9 bits (76), Expect = 8.3,   Method: Composition-based stats.
 Identities = 8/20 (40%), Positives = 9/20 (45%)

Query: 99  DMIKCIYCGLCQEACPVDAI 118
           +   CI C  C   CP  AI
Sbjct: 686 NPETCIQCNKCAYVCPHAAI 705


>gi|126463501|ref|YP_001044615.1| formate dehydrogenase, alpha subunit [Rhodobacter sphaeroides ATCC
           17029]
 gi|126105165|gb|ABN77843.1| formate dehydrogenase, alpha subunit [Rhodobacter sphaeroides ATCC
           17029]
          Length = 960

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 29/92 (31%), Gaps = 4/92 (4%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDID 99
                 + +   +     +CI C  C   C       A+TIE        +         
Sbjct: 162 PQWMVKDESNPYFTYDPSKCIVCSRCVRACEEVQGTFALTIEGRGFDSRVSAGMASDSFL 221

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
              C+ CG C +ACP   + E    E  T  R
Sbjct: 222 TSDCVSCGACVQACPTATLQEKSVIEIGTPER 253


>gi|302386104|ref|YP_003821926.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Clostridium saccharolyticum WM1]
 gi|302196732|gb|ADL04303.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Clostridium saccharolyticum WM1]
          Length = 368

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 11/62 (17%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              EE CI C  CE  C   AI+ ++               ID   C+ CG C   CPVD
Sbjct: 191 HVTEETCIGCHACEKNCAHSAISFQNKKAG-----------IDHNLCVGCGRCIGVCPVD 239

Query: 117 AI 118
           A+
Sbjct: 240 AV 241


>gi|330508801|ref|YP_004385229.1| iron-sulfur cluster/F420 dehydrogenase/hydrogenase fusion protein
           [Methanosaeta concilii GP-6]
 gi|328929609|gb|AEB69411.1| iron-sulfur cluster/F420 dehydrogenase/hydrogenase fusion protein
           [Methanosaeta concilii GP-6]
          Length = 474

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 29/98 (29%), Gaps = 2/98 (2%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI-ESGPRCHDGTRRT 93
             P EK              R+   EE+CI C LC  +C         +           
Sbjct: 94  RCPKEKQIQDLAREYGVIEPRFKLEEEKCILCGLCCRVCGEMVGVFAINFQNRGTDRSVG 153

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIV-EGPNFEFATET 130
             Y      CI CG C   CP  AI  +   F    E 
Sbjct: 154 APYGELSEDCIACGACSLVCPTSAISAQRNIFPLTAED 191


>gi|313836234|gb|EFS73948.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL037PA2]
 gi|314927671|gb|EFS91502.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL044PA1]
 gi|314971330|gb|EFT15428.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL037PA3]
 gi|328906270|gb|EGG26045.1| LOW QUALITY PROTEIN: NADH dehydrogenase subunit [Propionibacterium
           sp. P08]
          Length = 102

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 8/85 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIES--------GPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             + C +C +C   CP   ITI++          R          + ID   C+YCG+C 
Sbjct: 9   NVDACTSCVICARECPVWCITIDAHHESVPSSDVRRPRTVAVLDEFTIDWGLCMYCGMCI 68

Query: 111 EACPVDAIVEGPNFEFATETRQELY 135
           E+CP DA+         + +R +L 
Sbjct: 69  ESCPFDALSWSDKRVPDSASRTDLV 93


>gi|255525709|ref|ZP_05392641.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7]
 gi|296184813|ref|ZP_06853224.1| putative NAD-dependent formate dehydrogenase, beta subunit
           [Clostridium carboxidivorans P7]
 gi|255510611|gb|EET86919.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7]
 gi|296050595|gb|EFG90018.1| putative NAD-dependent formate dehydrogenase, beta subunit
           [Clostridium carboxidivorans P7]
          Length = 584

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 36/98 (36%), Gaps = 15/98 (15%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
             LRY FK +   +    K            L  Y    + C  C LC   CPAQAI  E
Sbjct: 500 TTLRY-FKDEYIAHIKDHKCPAKQC----KKLLTYSIDPDVCKGCTLCARKCPAQAIEGE 554

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           +               ID  KCI CG C   C  +A++
Sbjct: 555 TKKAHK----------IDQQKCIKCGNCMTVCKSNAVM 582


>gi|239908207|ref|YP_002954948.1| iron-sulfur binding protein [Desulfovibrio magneticus RS-1]
 gi|239798073|dbj|BAH77062.1| iron-sulfur binding protein [Desulfovibrio magneticus RS-1]
          Length = 375

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 11/82 (13%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           + +    R+    ++CI C  C A+CP  A T++                ID   CI CG
Sbjct: 187 KQDQHCVRFVVEPKKCIGCAECVAVCPVGAATMQGKKAV-----------IDKATCIGCG 235

Query: 108 LCQEACPVDAIVEGPNFEFATE 129
            C   CP  A+      E    
Sbjct: 236 ECLTVCPKKAMSIDWRTEIVPF 257



 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 18/42 (42%)

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           +   PR     +  VR+ ++  KCI C  C   CPV A    
Sbjct: 179 MGCAPRAGKQDQHCVRFVVEPKKCIGCAECVAVCPVGAATMQ 220


>gi|242279102|ref|YP_002991231.1| glutamate synthase (NADPH) [Desulfovibrio salexigens DSM 2638]
 gi|242121996|gb|ACS79692.1| Glutamate synthase (NADPH) [Desulfovibrio salexigens DSM 2638]
          Length = 508

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 27/85 (31%), Gaps = 15/85 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + CI CK+C   C  +A   +          R         KC+ C  C   CP  A+
Sbjct: 18  DPDLCIDCKVCIKQCSYEAHFWDDAREKVSHDSR---------KCVGCHRCAALCPTAAL 68

Query: 119 VEGPN---FEFATETRQEL---YYD 137
               N   F      R E     Y+
Sbjct: 69  TIKLNELDFRPNATWRPEFARNIYN 93


>gi|161503451|ref|YP_001570563.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|189043392|sp|A9MRW8|RNFC_SALAR RecName: Full=Electron transport complex protein rnfC
 gi|160864798|gb|ABX21421.1| hypothetical protein SARI_01525 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 673

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 33/107 (30%), Gaps = 18/107 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E  CI C  C   CPA  +  +       G +        +  CI CG C   CP  
Sbjct: 371 PQEETSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
                 N       RQ      E+   N  R E +       ++  R
Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459


>gi|124027372|ref|YP_001012692.1| putative ATPase RIL [Hyperthermus butylicus DSM 5456]
 gi|123978066|gb|ABM80347.1| RNase L inhibitor, ATPase [Hyperthermus butylicus DSM 5456]
          Length = 613

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 26/81 (32%), Gaps = 4/81 (4%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           R      E C     C   C A      +G +  +      +  I    C+ CG+C + C
Sbjct: 3   RIAVIDYELCKP-SKCHRECIAFCPVNLTGGKAIEFDEARRKPVIYEETCVGCGICVKKC 61

Query: 114 PVDAI---VEGPNFEFATETR 131
           P  AI         E +   R
Sbjct: 62  PFKAISIVNLPDELEKSVIHR 82


>gi|324997613|ref|ZP_08118725.1| ferredoxin--NADP+ reductase [Pseudonocardia sp. P1]
          Length = 498

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           + C     C A CP   I              T    ID   CI CG C +ACPVDA+ 
Sbjct: 7   QTCCTDASCVAACPVNCIHPTPDEPD---YTTTDMLYIDPRACIDCGACADACPVDAVF 62



 Score = 33.9 bits (76), Expect = 8.0,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 3/41 (7%)

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
           + I    C     C  ACPV+ I   P+      T  ++ Y
Sbjct: 3   FAITQTCCTD-ASCVAACPVNCIHPTPDE--PDYTTTDMLY 40


>gi|301059322|ref|ZP_07200249.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300446551|gb|EFK10389.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 395

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 11/79 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            EE C  C  CE  C   A+ +    +            + + +CI CG+C   CP  +I
Sbjct: 292 NEEACEGCGKCERSCQVDAVKVVEKGKSAV---------VSLDRCIGCGICVSKCPTGSI 342

Query: 119 VEGPN-FEFA-TETRQELY 135
                  E +  +TR+EL 
Sbjct: 343 SLSKKSKEISPPQTREELL 361


>gi|257095915|ref|YP_003169556.1| RnfABCDGE type electron transport complex subunit C [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257048439|gb|ACV37627.1| electron transport complex, RnfABCDGE type, C subunit [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 508

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/119 (22%), Positives = 34/119 (28%), Gaps = 10/119 (8%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGEE---RCIACKLCEAICPAQAITIESGPRCHDGT 90
           I  P  +        G  A             CI C  C   CP   + +E   R     
Sbjct: 341 IVLPHARVPIVKGASGILAFDAAEARTPAAGPCIRCGSCTRACPMGLLPLEMASRIGVDD 400

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF-----EFATETRQELYYDKERLLNN 144
                    +  CI CG C   CP   I     F     E +   R +L  D  R L +
Sbjct: 401 LDGATG-FGLSDCIGCGCCAYVCPSH-IPLVQYFSYAKGELSARERSKLRNDATRRLAD 457


>gi|220932266|ref|YP_002509174.1| electron transport complex, RnfABCDGE type, B subunit
           [Halothermothrix orenii H 168]
 gi|219993576|gb|ACL70179.1| electron transport complex, RnfABCDGE type, B subunit
           [Halothermothrix orenii H 168]
          Length = 331

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 27/58 (46%), Gaps = 11/58 (18%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           CI C +C  +CP  AITIE                ID  KCI CGLC E CP  AI  
Sbjct: 217 CIGCGICARVCPVDAITIEDNLAV-----------IDYDKCINCGLCAEKCPTGAIEF 263



 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 5/78 (6%)

Query: 59  GEERCIACKLCEAICPAQAIT-----IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
             ++C  C  C   CP   IT      ++  RC       V   +  + CI CG+C   C
Sbjct: 168 NYDKCTGCGKCVEACPRGIITLAPLSGKNHIRCSSHDHGKVVKGVCEVGCIGCGICARVC 227

Query: 114 PVDAIVEGPNFEFATETR 131
           PVDAI    N       +
Sbjct: 228 PVDAITIEDNLAVIDYDK 245



 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 9/60 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++CI C LC   CP  AI  E                    KC+ C  C  ACPVDAI
Sbjct: 242 DYDKCINCGLCAEKCPTGAIEFEGRRIEEI---------HITDKCVGCTRCARACPVDAI 292



 Score = 40.1 bits (92), Expect = 0.096,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 26/88 (29%), Gaps = 10/88 (11%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
             P E                    +  C+    C A+CP  AI +              
Sbjct: 114 RQPAEYMGIESCKAANMVNGGTKACQYGCLGLGDCVAVCPFDAIEMNENGLPE------- 166

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGP 122
              ++  KC  CG C EACP   I   P
Sbjct: 167 ---VNYDKCTGCGKCVEACPRGIITLAP 191



 Score = 35.5 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 11/66 (16%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-AIV 119
           ++C+ C  C   CP  AI      +            I+   C+ CG+C + C V  AI 
Sbjct: 275 DKCVGCTRCARACPVDAIEGSLKEKHE----------INPETCVKCGICYDTCKVKGAIE 324

Query: 120 EGPNFE 125
                E
Sbjct: 325 VTYQVE 330


>gi|99078168|ref|YP_611426.1| formate dehydrogenase, alpha subunit [Ruegeria sp. TM1040]
 gi|99035306|gb|ABF62164.1| formate dehydrogenase alpha subunit [Ruegeria sp. TM1040]
          Length = 924

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 6/81 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI----DMIKCIYCGLCQEACP 114
             + CI+C LC   C  +    +       G      +DI        C+ CG C +ACP
Sbjct: 147 NLDACISCGLCVRACR-EVQVNDVIGMAGRGHNAYPTFDIADPMGESSCVACGECVQACP 205

Query: 115 VDAIVE-GPNFEFATETRQEL 134
             A++      E     R++ 
Sbjct: 206 TGALMPATVVDENQVGDRKDF 226


>gi|303246786|ref|ZP_07333063.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfovibrio fructosovorans JJ]
 gi|302491803|gb|EFL51683.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfovibrio fructosovorans JJ]
          Length = 776

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 20/61 (32%), Gaps = 6/61 (9%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C  C +C  ICP  AI+                      KCI CG C  ACP        
Sbjct: 718 CRDCGVCTMICPTGAISRNQLEDKEFEMVSD------PAKCIGCGFCANACPCGVWSLVE 771

Query: 123 N 123
           N
Sbjct: 772 N 772


>gi|169333719|ref|ZP_02860912.1| hypothetical protein ANASTE_00103 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259568|gb|EDS73534.1| hypothetical protein ANASTE_00103 [Anaerofustis stercorihominis DSM
           17244]
          Length = 256

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 11/90 (12%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                 E +CI C LC+  CP   I +E                I  ++C+YCG C+  C
Sbjct: 3   HMIEVDENKCIGCGLCKRDCPTANIKLEDKKA-----------KIITMECLYCGHCEAIC 51

Query: 114 PVDAIVEGPNFEFATETRQELYYDKERLLN 143
           P +AI+     E + +  +++  + + L++
Sbjct: 52  PKNAIILTGFDEKSEQYNEQVRLNPKELMD 81


>gi|168463130|ref|ZP_02697061.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|195634204|gb|EDX52556.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
          Length = 192

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   +             + +    C  C LC + CP   I
Sbjct: 113 DENNCIGCTKCIQACPVDAIIGAT----------RAMHTVMSDLCTGCNLCVDPCPTHCI 162

Query: 119 VEGPNFEFATETRQEL 134
              P  E     + +L
Sbjct: 163 ELRPVNETPDSWKWDL 178



 Score = 35.5 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C  C +ACPVDAI
Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132


>gi|160933601|ref|ZP_02080989.1| hypothetical protein CLOLEP_02455 [Clostridium leptum DSM 753]
 gi|156867478|gb|EDO60850.1| hypothetical protein CLOLEP_02455 [Clostridium leptum DSM 753]
          Length = 1188

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 30/118 (25%), Gaps = 24/118 (20%)

Query: 29  KAKTTINYPFEKGSTSPRF-----RGEHALRRYPNGEERCIACKLCEAICPAQ------- 76
           K   +   P   G+          RG        N  + CI C  C  +CP         
Sbjct: 658 KLPVSTFMPHVDGTAPQGSSAFEKRGIAVDVPEWN-PQNCIQCNFCSYVCPHAVIRPVAM 716

Query: 77  -------AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP----VDAIVEGPN 123
                  A                    I  + C  CG C + CP      A+V  P 
Sbjct: 717 TADELAAAPEGTKSKDMTGVPGMKFVMTISTLDCTGCGSCAQVCPGMKGEKALVMKPI 774


>gi|323345696|ref|ZP_08085919.1| pyruvate-ferredoxin oxidoreductase [Prevotella oralis ATCC 33269]
 gi|323093810|gb|EFZ36388.1| pyruvate-ferredoxin oxidoreductase [Prevotella oralis ATCC 33269]
          Length = 1191

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 24/82 (29%), Gaps = 16/82 (19%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIE---------------SGPRCHDGTRR 92
           RG  A        E CI C  C  +CP   I                             
Sbjct: 680 RGVEAFNPEWT-AENCIQCNKCAYVCPHACIRPFVLDEEEVKTFEDKTLEMKVPKTMAGM 738

Query: 93  TVRYDIDMIKCIYCGLCQEACP 114
             R  + ++ C+ CG C + CP
Sbjct: 739 HFRIQVSVLDCVGCGNCADVCP 760


>gi|304438798|ref|ZP_07398725.1| electron transport complex protein RnfB [Peptoniphilus duerdenii
           ATCC BAA-1640]
 gi|304372721|gb|EFM26300.1| electron transport complex protein RnfB [Peptoniphilus duerdenii
           ATCC BAA-1640]
          Length = 315

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 31/84 (36%), Gaps = 11/84 (13%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P+++ +    F  +            CI C +CE  CP  AI +                
Sbjct: 199 PYKQKTEVKCFSKDAGKEVRTYCSNGCIGCGICEKKCPKDAIHVTDNLAA---------- 248

Query: 97  DIDMIKCIYCGLCQEACPVDAIVE 120
            ID  KCI CG+C   CP  AI  
Sbjct: 249 -IDYTKCINCGICVANCPTGAIFC 271


>gi|261252995|ref|ZP_05945568.1| iron-sulfur cluster-binding protein [Vibrio orientalis CIP 102891]
 gi|260936386|gb|EEX92375.1| iron-sulfur cluster-binding protein [Vibrio orientalis CIP 102891]
          Length = 553

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 10/84 (11%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
              + C  C  C A+CP +A+  +           +         CI CGLC +ACP   
Sbjct: 415 CESKDCTLCMSCVAVCPTRALHTDGS---------SPSLQFIEQDCIQCGLCTKACPEQV 465

Query: 118 IVEGPNFEFATETRQEL-YYDKER 140
           +       +   +RQ+     +E+
Sbjct: 466 LSMTSRMNWDKTSRQQAQVIHQEK 489



 Score = 40.1 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 6/54 (11%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           C+ C   CPA A++ E   +         R +I+   C   G C  ACP +AI 
Sbjct: 186 CERCVDACPAGALSSEGSDKTGH------RIEINPYLCQGVGTCATACPTEAIH 233


>gi|253579276|ref|ZP_04856546.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849374|gb|EES77334.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 505

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQ 110
              E+ CI C  C   CP  AI  +  P          G+    R +ID  KC+ CG C 
Sbjct: 144 HIDEDACIKCGKCLEACPYNAIIKQERPCSKACGMNAIGSDEYGRAEIDQDKCVSCGQCL 203

Query: 111 EACPVDAI 118
            +CP  AI
Sbjct: 204 VSCPFSAI 211



 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/117 (21%), Positives = 41/117 (35%), Gaps = 9/117 (7%)

Query: 10  FLFLKEFVGA--FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER-CIAC 66
            +FL+  V      + +    +   T + P  KG  +     ++      N  +  C +C
Sbjct: 50  SIFLERAVVGERLRVAMGMSLRK-VTEHAPISKGVEASVIEEKYYEPPLINVIKFACNSC 108

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYD-----IDMIKCIYCGLCQEACPVDAI 118
                +           P      ++ V  +     ID   CI CG C EACP +AI
Sbjct: 109 PEKRVMITEGCQGCLEHPCVEVCPKKAVHMEGGRSHIDEDACIKCGKCLEACPYNAI 165


>gi|149913158|ref|ZP_01901692.1| formate dehydrogenase, alpha subunit [Roseobacter sp. AzwK-3b]
 gi|149813564|gb|EDM73390.1| formate dehydrogenase, alpha subunit [Roseobacter sp. AzwK-3b]
          Length = 927

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 32/92 (34%), Gaps = 9/92 (9%)

Query: 33  TINYPF-EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
           T  +P  EK           A+R      + CI C LC   C       +       G  
Sbjct: 123 TSRFPKLEKERIPLLDDSHVAMRV---NLDACIQCNLCVRACR-DVQVNDVIGMAGRGHD 178

Query: 92  RTVRYD----IDMIKCIYCGLCQEACPVDAIV 119
               +D    +    C+ CG C +ACP  A++
Sbjct: 179 AYPVFDFADPMGESTCVACGECVQACPTGALM 210


>gi|13022069|gb|AAK11625.1|AF331719_1 [Fe] hydrogenase large subunit [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 421

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 30/81 (37%), Gaps = 14/81 (17%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            L       E+CI C  C+  CP  AI  ++G                   CI CG C  
Sbjct: 24  ELFFIQIDPEKCIGCDTCQEYCPTGAIFGDTGSAHSIPH---------EEICINCGQCLT 74

Query: 112 ACPVDAIVEGPNFEFATETRQ 132
            CPV AI     +E  +  R+
Sbjct: 75  HCPVGAI-----YEVQSWVRE 90



 Score = 40.5 bits (93), Expect = 0.075,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 16/42 (38%)

Query: 78  ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
             ++  P             ID  KCI C  CQE CP  AI 
Sbjct: 10  QYVDQSPDPRANPDELFFIQIDPEKCIGCDTCQEYCPTGAIF 51


>gi|238792247|ref|ZP_04635882.1| Pyruvate-flavodoxin oxidoreductase [Yersinia intermedia ATCC 29909]
 gi|238728484|gb|EEQ20003.1| Pyruvate-flavodoxin oxidoreductase [Yersinia intermedia ATCC 29909]
          Length = 1178

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 36/144 (25%), Gaps = 36/144 (25%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A        + C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSAFPPDGTWPVGTTQWEKRNIAENIPIWQPDLCTQCNHCVAAC 699

Query: 74  PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP- 114
           P  A                   +++   R   G +      +    C  C LC E CP 
Sbjct: 700 PHSAIRAKVVQPEAMSGAPDSLQSLDVKARDMRGQKY--VLQVAPEDCTGCNLCYEVCPA 757

Query: 115 -------VDAIVEGPNFEFATETR 131
                  V AI   P  E   E +
Sbjct: 758 KDRQNPEVKAINMQPRLEHLVEEK 781


>gi|329898085|ref|ZP_08272294.1| Electron transport complex protein RnfC [gamma proteobacterium
           IMCC3088]
 gi|328920957|gb|EGG28382.1| Electron transport complex protein RnfC [gamma proteobacterium
           IMCC3088]
          Length = 574

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 4/126 (3%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93
           +  P  K +       +  L       + CI C  C  +CPA  +  +            
Sbjct: 338 LRVPIVKTTNCILAPSKTELASDTQ-SQPCIRCGHCADVCPASLLPQQLYWYAKS-QNHE 395

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIV 153
                ++  CI CG C   CP  A+     +  A    +E   ++ +      R+E+ + 
Sbjct: 396 QLDAHNLADCIECGACAYVCP-SALPLVQFYRAAKAEIKEKSIEQRQADIAKTRFEARLA 454

Query: 154 RNIVTD 159
           R +  D
Sbjct: 455 R-LERD 459


>gi|310827928|ref|YP_003960285.1| hypothetical protein ELI_2339 [Eubacterium limosum KIST612]
 gi|308739662|gb|ADO37322.1| hypothetical protein ELI_2339 [Eubacterium limosum KIST612]
          Length = 275

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 36/112 (32%), Gaps = 27/112 (24%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P ++  T    R    L         C  CKLC  +CP  +I+ +              
Sbjct: 183 QPRDRKGTPVDIRKVKPLTDD-----TCTDCKLCSEVCPMGSISHDD------------- 224

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDR 147
             I    CI CG C + CPV A      ++ A        Y K  L     R
Sbjct: 225 VQIYTGICIKCGACIKKCPVHARY----YDDAGY-----LYHKHELEEGLKR 267


>gi|303327153|ref|ZP_07357595.1| pyridine nucleotide-disulfide oxidoreductase [Desulfovibrio sp.
           3_1_syn3]
 gi|302863141|gb|EFL86073.1| pyridine nucleotide-disulfide oxidoreductase [Desulfovibrio sp.
           3_1_syn3]
          Length = 764

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 23/72 (31%), Gaps = 1/72 (1%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            L R      RC++C  C   C     +        +       Y  D  +CI CG+C  
Sbjct: 690 ELPRPLEDHARCVSCGTCRD-CEMCLKSCPEKAIDRNELSGGFEYVSDPARCIGCGICAG 748

Query: 112 ACPVDAIVEGPN 123
            CP        N
Sbjct: 749 VCPCGVWAMRDN 760


>gi|261820252|ref|YP_003258358.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Pectobacterium
           wasabiae WPP163]
 gi|261604265|gb|ACX86751.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Pectobacterium
           wasabiae WPP163]
          Length = 1177

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 39/143 (27%), Gaps = 25/143 (17%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P     T  +   +   A        + C  C  C A C
Sbjct: 646 MLAGLGDTL------PVSALPPDGTWPTGTTKWEKRNIAEEIPLWQPQLCTQCNHCVAAC 699

Query: 74  PAQAIT--------IESGP--------RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           P  AI         +E+ P        +  D   +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVQPDAMENAPASLQSLDVKARDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 118 IVEGPNFEFATETR-QELYYDKE 139
                      E+R   L  +KE
Sbjct: 760 RQNPEIKAINMESRLDNLTAEKE 782


>gi|253687099|ref|YP_003016289.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251753677|gb|ACT11753.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 1177

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 39/143 (27%), Gaps = 25/143 (17%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P     T  +   +   A        + C  C  C A C
Sbjct: 646 MLAGLGDTL------PVSALPPDGTWPTGTTKWEKRNIAEEIPLWQPQLCTQCNHCVAAC 699

Query: 74  PAQAIT--------IESGP--------RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           P  AI         +E+ P        +  D   +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVQPDAMENAPASLQSLDVKARDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 118 IVEGPNFEFATETR-QELYYDKE 139
                      E+R   L  +KE
Sbjct: 760 RQNPEIKAINMESRLDNLTAEKE 782


>gi|227326333|ref|ZP_03830357.1| pyruvate-flavodoxin oxidoreductase [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 1177

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 39/143 (27%), Gaps = 25/143 (17%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P     T  +   +   A        + C  C  C A C
Sbjct: 646 MLAGLGDTL------PVSALPPDGTWPTGTTKWEKRNIAEEIPLWQPQLCTQCNHCVAAC 699

Query: 74  PAQAIT--------IESGP--------RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           P  AI         +E+ P        +  D   +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVQPDAMENAPASLQSLDVKARDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 118 IVEGPNFEFATETR-QELYYDKE 139
                      E+R   L  +KE
Sbjct: 760 RQNPEIKAINMESRLDNLTAEKE 782


>gi|170759049|ref|YP_001788076.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169406038|gb|ACA54449.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 1192

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 24/88 (27%), Gaps = 16/88 (18%)

Query: 51  HALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY 96
            A+       ++CI C  C  +CP                A                   
Sbjct: 677 IAINVPEWQLDKCIQCNQCSYVCPHAVIRPVLLSDEEAKNAPKGFESKPAAGAKGLNFTM 736

Query: 97  DIDMIKCIYCGLCQEACP--VDAIVEGP 122
            I    C  CG C + CP    A++  P
Sbjct: 737 AISPYDCTGCGNCADVCPAKEKALIMKP 764


>gi|146306434|ref|YP_001186899.1| electron transport complex protein RnfC [Pseudomonas mendocina ymp]
 gi|145574635|gb|ABP84167.1| electron transport complex, RnfABCDGE type, C subunit [Pseudomonas
           mendocina ymp]
          Length = 944

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 2/98 (2%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            CI C  C   CPA  +  +       G         ++  CI CG C   CP  +I   
Sbjct: 371 PCIRCGECAEACPAS-LLPQQLHFFALGQEHEQLKAHNLFDCIECGACAYVCP-SSIPLV 428

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
             +  A    +EL   + +  ++  R+E    R    +
Sbjct: 429 QYYRAAKAEIRELEQKQLKAEHSKQRFEQRQERLRRAE 466


>gi|15644047|ref|NP_229096.1| iron-sulfur cluster-binding protein, putative [Thermotoga maritima
           MSB8]
 gi|170289310|ref|YP_001739548.1| cobyrinic acid ac-diamide synthase [Thermotoga sp. RQ2]
 gi|4981850|gb|AAD36366.1|AE001784_8 iron-sulfur cluster-binding protein, putative [Thermotoga maritima
           MSB8]
 gi|170176813|gb|ACB09865.1| Cobyrinic acid ac-diamide synthase [Thermotoga sp. RQ2]
          Length = 283

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 25/76 (32%), Gaps = 11/76 (14%)

Query: 47  FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
           F     L         CI C  C + C   AI++                 +    C  C
Sbjct: 54  FEEPVHLMIPVVDNSVCIRCGECASTCQFGAISVFPSGTF-----------VFESLCHGC 102

Query: 107 GLCQEACPVDAIVEGP 122
           G C   CPV+AI E P
Sbjct: 103 GACSIMCPVNAISERP 118


>gi|50119767|ref|YP_048934.1| pyruvate-flavodoxin oxidoreductase [Pectobacterium atrosepticum
           SCRI1043]
 gi|49610293|emb|CAG73737.1| pyruvate-flavodoxin oxidoreductase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 1177

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 39/143 (27%), Gaps = 25/143 (17%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P     T  +   +   A        + C  C  C A C
Sbjct: 646 MLAGLGDTL------PVSALPPDGTWPTGTTKWEKRNIAEEIPLWQPQLCTQCNHCVAAC 699

Query: 74  PAQAIT--------IESGP--------RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           P  AI         +E+ P        +  D   +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVQPDAMENAPASLQSLDVKARDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 118 IVEGPNFEFATETR-QELYYDKE 139
                      E+R   L  +KE
Sbjct: 760 RQNPEIKAINMESRLDNLTAEKE 782


>gi|15669355|ref|NP_248160.1| formylmethanofuran dehydrogenase subunit FwdF [Methanocaldococcus
           jannaschii DSM 2661]
 gi|47115673|sp|Q58566|FWDF_METJA RecName: Full=Polyferredoxin protein fwdF
 gi|1591792|gb|AAB99168.1| formylmethanofuran dehydrogenase, subunit F (tungsten) (fwdF)
           [Methanocaldococcus jannaschii DSM 2661]
          Length = 355

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 33/72 (45%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           GE   R     +E C+ C +C  ICP  AI +        G     + DID   C+ CG+
Sbjct: 19  GEVEKRELCWNDELCVGCGICADICPVNAIAMGPLGAIAKGDIIAPKLDIDKDVCVLCGM 78

Query: 109 CQEACPVDAIVE 120
           C  ACP DA+  
Sbjct: 79  CASACPFDALDL 90



 Score = 47.8 bits (112), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 1/77 (1%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R     R     +++C+ C+ CE +CP  AI +E               +I+  KC+ CG
Sbjct: 102 RYPKIKRDIKVYQDKCVLCEQCEMVCPQGAIVVE-RELAEREKFVIGEININKEKCVLCG 160

Query: 108 LCQEACPVDAIVEGPNF 124
           +C E CP DAI    N+
Sbjct: 161 ICAEYCPADAINLKYNY 177



 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 35/71 (49%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R +  +      +E+C+ C +C   CPA AI ++         +     ++D  KC++C 
Sbjct: 141 REKFVIGEININKEKCVLCGICAEYCPADAINLKYNYPTPSNPKPITDIEVDKDKCVFCK 200

Query: 108 LCQEACPVDAI 118
           +C+  CP DAI
Sbjct: 201 VCEFVCPHDAI 211



 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 8/83 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P E       F+GE  +         C AC  C +ICP  A+     P+  D   +  R
Sbjct: 254 CPAEAIEVEKPFKGELII-----DVNACNACGACISICPCSALEF---PKPKDKAEKVPR 305

Query: 96  YDIDMIKCIYCGLCQEACPVDAI 118
             ++   C+ CG C +ACPV+AI
Sbjct: 306 IIVNQNLCVLCGACAKACPVNAI 328



 Score = 41.6 bits (96), Expect = 0.037,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 5/106 (4%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA----ITIESGPRCHDGTRRTVR 95
            G      +G+    +    ++ C+ C +C + CP  A    I  +S        +    
Sbjct: 50  MGPLGAIAKGDIIAPKLDIDKDVCVLCGMCASACPFDALDLKINGKSIKEDERYPKIKRD 109

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNF-EFATETRQELYYDKER 140
             +   KC+ C  C+  CP  AIV      E       E+  +KE+
Sbjct: 110 IKVYQDKCVLCEQCEMVCPQGAIVVERELAEREKFVIGEININKEK 155



 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 8/80 (10%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD--------IDMIKCI 104
           +      +++C+ CK+CE +CP  AI +              +          ID   C+
Sbjct: 186 ITDIEVDKDKCVFCKVCEFVCPHDAIEVICYKCPMMKRIPQAKLYEDITGKTVIDKDACV 245

Query: 105 YCGLCQEACPVDAIVEGPNF 124
            CG C   CP +AI     F
Sbjct: 246 TCGWCAFICPAEAIEVEKPF 265



 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 8/62 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++ C+ C  C  ICPA+AI +E   +            ID+  C  CG C   CP  A+
Sbjct: 240 DKDACVTCGWCAFICPAEAIEVEKPFKGEL--------IIDVNACNACGACISICPCSAL 291

Query: 119 VE 120
             
Sbjct: 292 EF 293



 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 15/22 (68%)

Query: 101 IKCIYCGLCQEACPVDAIVEGP 122
             C+ CG+C + CPV+AI  GP
Sbjct: 31  ELCVGCGICADICPVNAIAMGP 52


>gi|312621650|ref|YP_004023263.1| dihydroorotate dehydrogenase family protein [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202117|gb|ADQ45444.1| dihydroorotate dehydrogenase family protein [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 381

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 12/67 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +E+C +C  C  +C   AI  + G    +              C  CGLC E CP  AI
Sbjct: 326 DKEKCTSCGKCFTVCIYDAIEKDDGKFKVN------------QNCDGCGLCAELCPTKAI 373

Query: 119 VEGPNFE 125
                 E
Sbjct: 374 SMVRRGE 380


>gi|283785156|ref|YP_003365021.1| electron transport complex protein [Citrobacter rodentium ICC168]
 gi|282948610|emb|CBG88201.1| electron transport complex protein [Citrobacter rodentium ICC168]
          Length = 678

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 37/112 (33%), Gaps = 9/112 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEKGCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVTDSP 161
            I     F     E A  +++E      K R      R E E    +     
Sbjct: 429 NIPLVQYFRQEKAEIAAISQEEKRAAEAKARFEARQARLEREKAARLERHKK 480


>gi|224373439|ref|YP_002607811.1| NADH dehydrogenase subunit i [Nautilia profundicola AmH]
 gi|223589330|gb|ACM93066.1| NADH dehydrogenase subunit i [Nautilia profundicola AmH]
          Length = 194

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 9/72 (12%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103
           SP FRG H ++        C  C+ C  ICP  AI +E  P      R     ++++  C
Sbjct: 34  SPIFRGMHEIKYD-----ICTGCEACAKICPVDAIVMEPLPIK----RPKALPEVNLGIC 84

Query: 104 IYCGLCQEACPV 115
           I+CGLC++ CP 
Sbjct: 85  IFCGLCEDVCPT 96



 Score = 38.5 bits (88), Expect = 0.31,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 18/46 (39%)

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           A    +    H        ++I    C  C  C + CPVDAIV  P
Sbjct: 22  ATKDVTKDTMHHSPIFRGMHEIKYDICTGCEACAKICPVDAIVMEP 67


>gi|254503835|ref|ZP_05115986.1| dihydroorotate dehydrogenase family protein [Labrenzia alexandrii
           DFL-11]
 gi|222439906|gb|EEE46585.1| dihydroorotate dehydrogenase family protein [Labrenzia alexandrii
           DFL-11]
          Length = 437

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 6/76 (7%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           +    + + +    ++ CI C  C   C     + ++     DG R+    D    +C+ 
Sbjct: 329 QHLNLNYIAKAKIDQDLCIQCGRCHIACED--TSHQAITNMVDGARKFEVID---EECVG 383

Query: 106 CGLCQEACPV-DAIVE 120
           C LC   CPV + I  
Sbjct: 384 CNLCVNVCPVENCITM 399


>gi|51245624|ref|YP_065508.1| polyferredoxins [Desulfotalea psychrophila LSv54]
 gi|50876661|emb|CAG36501.1| related to polyferredoxins [Desulfotalea psychrophila LSv54]
          Length = 628

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 15/89 (16%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
              E C  C  C  +C   A+  E+                +   C+ CGLC   CP +A
Sbjct: 504 CDNESCTQCMSCINVCQIGAMKTEATEMILS---------HNGSICVGCGLCVSICPENA 554

Query: 118 IVEGPNFEFATETRQELYYDKERLLNNGD 146
           +     ++F+     E ++  +RLL  G+
Sbjct: 555 LQMSRAWQFS-----EAFFS-DRLLAAGE 577



 Score = 38.2 bits (87), Expect = 0.36,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 20/60 (33%), Gaps = 14/60 (23%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              RC  C  C   CP + I+                   D   C +C  C+E CP  AI
Sbjct: 177 DSSRCTYCGQCGITCPEKCISH--------------SLQFDFSACTFCKKCEEICPQGAI 222



 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 12/54 (22%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           C+LC   C  +AI ++ G              I+ ++C  CG C  ACP  A+ 
Sbjct: 293 CRLCADACQYEAIDLKGG------------VSINPLRCEECGDCVAACPTGALQ 334



 Score = 34.7 bits (78), Expect = 3.9,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 13/27 (48%)

Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFA 127
            +C YCG C   CP   I     F+F+
Sbjct: 179 SRCTYCGQCGITCPEKCISHSLQFDFS 205


>gi|325967922|ref|YP_004244114.1| 2-Ketoisovalerate:ferredoxin oxidoreductase (VOR),delta subunit
           [Vulcanisaeta moutnovskia 768-28]
 gi|323707125|gb|ADY00612.1| 2-Ketoisovalerate:ferredoxin oxidoreductase (VOR),delta subunit
           [Vulcanisaeta moutnovskia 768-28]
          Length = 91

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 24/75 (32%), Gaps = 10/75 (13%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G   + R      +C  C +C   CP   I                   I+   C  CG+
Sbjct: 24  GTWRVYRPVVNYSKCTKCGICWLYCPENVIEWLEDKNIK----------INYDYCKGCGI 73

Query: 109 CQEACPVDAIVEGPN 123
           C + CPV AI     
Sbjct: 74  CADVCPVKAIDMVKE 88


>gi|315302196|ref|ZP_07873119.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Listeria ivanovii
           FSL F6-596]
 gi|313629436|gb|EFR97646.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Listeria ivanovii
           FSL F6-596]
          Length = 1216

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 32/95 (33%), Gaps = 20/95 (21%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTV 94
            AL       E C  C  C  +CP  AI                 +    R  DG R   
Sbjct: 680 IALEIPEWISENCTMCNECAFVCPHAAIRPILTDEEEMEEAPEGFMTREMRGKDGLRY-- 737

Query: 95  RYDIDMIKCIYCGLCQEACP--VDAIVEGPNFEFA 127
           R  +  + C  C LC E CP    A+V  P  E A
Sbjct: 738 RIQVSPMDCTGCNLCAETCPAKEKALVMRPFEEVA 772


>gi|271500636|ref|YP_003333661.1| RnfABCDGE type electron transport complex subunit C [Dickeya
           dadantii Ech586]
 gi|270344191|gb|ACZ76956.1| electron transport complex, RnfABCDGE type, C subunit [Dickeya
           dadantii Ech586]
          Length = 759

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 1/61 (1%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
            +    E+ CI C  C   CPA  +  +       G          +  CI CG C   C
Sbjct: 369 IQVQEEEQACIRCSKCADACPAG-LLPQQLYWFSRGQEHEKARQHHLFDCIECGACAYVC 427

Query: 114 P 114
           P
Sbjct: 428 P 428


>gi|150400807|ref|YP_001324573.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus aeolicus Nankai-3]
 gi|150013510|gb|ABR55961.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           aeolicus Nankai-3]
          Length = 250

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 10/76 (13%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
                L  Y    E+CI C LC+  CP  AIT+E          R   +DID+ KC+ C 
Sbjct: 118 HRTIKLNNYHIDVEKCIFCGLCDKFCPTNAITVE----------RRKSFDIDLNKCVGCN 167

Query: 108 LCQEACPVDAIVEGPN 123
            C   CP   I     
Sbjct: 168 ACASVCPKKIITVDNE 183



 Score = 41.2 bits (95), Expect = 0.044,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 15/74 (20%)

Query: 60  EERCIACKLCEAICPAQ---------------AITIESGPRCHDGTRRTVRYDIDMIKCI 104
            ++C+ C++C   CP                  +           T +   Y ID+ KCI
Sbjct: 75  PDKCVKCEICAMTCPVDTIKVLDANAKIENHSVVYTIKEQDTEHRTIKLNNYHIDVEKCI 134

Query: 105 YCGLCQEACPVDAI 118
           +CGLC + CP +AI
Sbjct: 135 FCGLCDKFCPTNAI 148



 Score = 38.5 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 9/65 (13%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           +      + CI C LC   CP  AIT  +  +           +I   KC+ C +C   C
Sbjct: 38  KYICIVPDDCIRCNLCYIECPVDAITKPTVRKPA---------EIIPDKCVKCEICAMTC 88

Query: 114 PVDAI 118
           PVD I
Sbjct: 89  PVDTI 93



 Score = 38.2 bits (87), Expect = 0.45,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 11/87 (12%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +  +           +      + C+ C +C   CP   I   +             
Sbjct: 173 CPKKIITVDNELGELPFNKSISVDNDVCVKCLVCVEECPINIIKEIAEGV---------- 222

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGP 122
            +ID   C+YCG C+ +CPV AI    
Sbjct: 223 -EIDKSNCMYCGRCEGSCPVHAIEIKN 248


>gi|154248925|ref|YP_001409750.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1]
 gi|154152861|gb|ABS60093.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1]
          Length = 632

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 31/69 (44%), Gaps = 10/69 (14%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           A ++Y    E+C +C LC   CP  AI+ E G            Y ID  KCI CGLC  
Sbjct: 572 AFKKYIIIPEKCKSCSLCARSCPNNAISGERGKP----------YVIDQDKCIKCGLCVT 621

Query: 112 ACPVDAIVE 120
            C   AI  
Sbjct: 622 KCKFGAIEL 630


>gi|1345094|gb|AAC47160.1| TvhydB protein [Trichomonas vaginalis]
          Length = 449

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 22/70 (31%), Gaps = 6/70 (8%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK------CIYCGLCQEA 112
              +CI C+ C   C   A          +  ++         K      CI CG C   
Sbjct: 25  DMHKCINCQACVRACKNVAGQSVLKSVKINEGKKKGVVQTVTGKLLAETNCIGCGQCTLV 84

Query: 113 CPVDAIVEGP 122
           CP  AI E  
Sbjct: 85  CPTQAIHEKD 94


>gi|52424975|ref|YP_088112.1| electron transport complex protein RnfC [Mannheimia
           succiniciproducens MBEL55E]
 gi|81691415|sp|Q65U33|RNFC_MANSM RecName: Full=Electron transport complex protein rnfC; AltName:
           Full=Nitrogen fixation protein rnfC
 gi|52307027|gb|AAU37527.1| NqrA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 723

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 12/103 (11%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C   CP   +  +               +  +  CI CGLC   CP   I  
Sbjct: 376 QSCIRCSACSDACPVH-LMPQQLYWYARSEDHEKSEEYSLKDCIECGLCAYVCPSH-IPL 433

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
              F      RQE    K ++    D+ +      +  ++  R
Sbjct: 434 IQYF------RQE----KAKIWEIKDKAKKAEEAKLRFEAKQR 466


>gi|20094236|ref|NP_614083.1| bifunctional coenzyme F420-reducing hydrogenase subunit
           beta/oxidoreductase [Methanopyrus kandleri AV19]
 gi|19887267|gb|AAM02013.1| Coenzyme F420-reducing hydrogenase, beta subunit fused to
           oxidoreductase related to nitrite reductase
           [Methanopyrus kandleri AV19]
          Length = 668

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 25/75 (33%), Gaps = 6/75 (8%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                 G     R     E+C  C  C   C   AI      R      +    D D  +
Sbjct: 520 PQHHDLGFAGAVRPGVDPEKCTGCGQCVDACKVDAI------RIITVGGQAAVADTDYKR 573

Query: 103 CIYCGLCQEACPVDA 117
           C+YCG C   CP +A
Sbjct: 574 CVYCGKCINVCPEEA 588



 Score = 38.2 bits (87), Expect = 0.44,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 17/37 (45%)

Query: 84  PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
                G    VR  +D  KC  CG C +AC VDAI  
Sbjct: 521 QHHDLGFAGAVRPGVDPEKCTGCGQCVDACKVDAIRI 557



 Score = 34.7 bits (78), Expect = 4.7,   Method: Composition-based stats.
 Identities = 7/37 (18%), Positives = 11/37 (29%)

Query: 87  HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
            +   +     ++   C  CG C   CP   I     
Sbjct: 16  EEFEWKLTEEVVEPGACALCGTCVAICPGGIIELTDE 52


>gi|325960232|ref|YP_004291698.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
 gi|325331664|gb|ADZ10726.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
          Length = 347

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/84 (30%), Positives = 36/84 (42%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
             K       R     R     +E C+ C +CE+ICP  AI + S            + +
Sbjct: 7   EVKAKDFNVERSAEEDRELSFKDESCVGCGVCESICPVGAIKLGSVGAIVRNDIDESKIE 66

Query: 98  IDMIKCIYCGLCQEACPVDAIVEG 121
           ID  KC+ CG+C   CPVDA+   
Sbjct: 67  IDEEKCVLCGMCSVGCPVDALEFT 90



 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 8/86 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRR--YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93
            P E  + + +      L        +E CI C +CE +CPA AITI+            
Sbjct: 126 CPREAITVARQLPDRSKLVTGEIDIDKETCIDCGICEEMCPADAITIDQKGPEDFDIAVD 185

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIV 119
                   KC+YC +C++ACPVDAI+
Sbjct: 186 K------DKCVYCLVCKKACPVDAIM 205



 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 34/80 (42%), Gaps = 1/80 (1%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100
              S        +      +E CI CK CE  CP +AIT  +          T   DID 
Sbjct: 94  TPISEIETYPKLISSAEIDDETCIYCKACERACPREAIT-VARQLPDRSKLVTGEIDIDK 152

Query: 101 IKCIYCGLCQEACPVDAIVE 120
             CI CG+C+E CP DAI  
Sbjct: 153 ETCIDCGICEEMCPADAITI 172



 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 3/83 (3%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
           +  E          +          ++C  C  C  +CP   +             + ++
Sbjct: 241 WCEEVCPVDAAKVEKPFEGELSLDLDKCTTCGACVDVCPCDVLFFPKSSAPGTIDDKLMK 300

Query: 96  YDIDMIKCIYCGLCQEACPVDAI 118
              D   CIYCG C+  CPV+AI
Sbjct: 301 ---DEQFCIYCGACENVCPVEAI 320



 Score = 42.0 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 7/74 (9%)

Query: 59  GEERCIACKLCEAICPAQA-------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +++C+ C +C+  CP  A        +        +    T +  ID   C+ CG C+E
Sbjct: 185 DKDKCVYCLVCKKACPVDAIMAACRTCSYGEYDLNPEDAETTGKALIDDDACVRCGWCEE 244

Query: 112 ACPVDAIVEGPNFE 125
            CPVDA      FE
Sbjct: 245 VCPVDAAKVEKPFE 258



 Score = 40.5 bits (93), Expect = 0.075,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRC----HDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            EE+C+ C +C   CP  A+                +     +ID   CIYC  C+ ACP
Sbjct: 68  DEEKCVLCGMCSVGCPVDALEFTVDGTPISEIETYPKLISSAEIDDETCIYCKACERACP 127

Query: 115 VDAI 118
            +AI
Sbjct: 128 REAI 131


>gi|312622572|ref|YP_004024185.1| nitrite and sulfite reductase 4Fe-4S region [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312203039|gb|ADQ46366.1| nitrite and sulphite reductase 4Fe-4S region [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 296

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 9/76 (11%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G     +    +  C  C LC+A+CP +AI I+          +  +  ID  KC YCG 
Sbjct: 152 GIKGAVKPEWEKSSCTFCGLCQAVCPTKAIQIDE---------KNKKITIDRDKCTYCGR 202

Query: 109 CQEACPVDAIVEGPNF 124
           C ++CP ++    P +
Sbjct: 203 CVKSCPTNSWKGKPGY 218



 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 3/48 (6%)

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           C    +  E       G  +      +   C +CGLCQ  CP  AI  
Sbjct: 139 CGNNCLKAEENDLGIKGAVKPEW---EKSSCTFCGLCQAVCPTKAIQI 183


>gi|237738276|ref|ZP_04568757.1| hydrogenase [Fusobacterium mortiferum ATCC 9817]
 gi|229420156|gb|EEO35203.1| hydrogenase [Fusobacterium mortiferum ATCC 9817]
          Length = 678

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 22/66 (33%), Gaps = 9/66 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C+ +C                    +    ++  CI CG C   CP  +I
Sbjct: 22  NESLCIKCGQCKEVC---------EKYIGVHNTYKLVDTNNIAVCINCGQCANVCPTSSI 72

Query: 119 VEGPNF 124
            E   +
Sbjct: 73  TEKHEY 78


>gi|222054905|ref|YP_002537267.1| Electron transfer flavoprotein alpha subunit [Geobacter sp. FRC-32]
 gi|221564194|gb|ACM20166.1| Electron transfer flavoprotein alpha subunit [Geobacter sp. FRC-32]
          Length = 442

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 11/60 (18%)

Query: 62  RCIACK-LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           +CIAC   C++ CP  AI +                 I+  KCI C  C + CP  AI  
Sbjct: 22  KCIACGARCQSSCPVDAIEMNEAGEPV----------INPDKCIGCVKCVKVCPAQAIEM 71


>gi|126465896|ref|YP_001041005.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Staphylothermus marinus F1]
 gi|126014719|gb|ABN70097.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Staphylothermus marinus F1]
          Length = 93

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 10/65 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              +C+ C LCE  CP   I +E                I+   C  CG+C + CPV+AI
Sbjct: 38  NNNKCVRCFLCEIYCPVNVIRVEPE----------TGVTINYDYCKGCGVCADVCPVNAI 87

Query: 119 VEGPN 123
              P 
Sbjct: 88  ELVPE 92


>gi|157963951|ref|YP_001503985.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella pealeana ATCC 700345]
 gi|157848951|gb|ABV89450.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           pealeana ATCC 700345]
          Length = 559

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 30/75 (40%), Gaps = 9/75 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E C  C  C A CP  A+T         G R  + +      C+ CGLC+ ACP   I
Sbjct: 425 NTENCTLCMSCVATCPTMALT-------DGGDRPALHFV--EQDCVQCGLCETACPEKVI 475

Query: 119 VEGPNFEFATETRQE 133
              P   F    RQE
Sbjct: 476 SLTPQVNFDKAARQE 490



 Score = 38.2 bits (87), Expect = 0.37,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 11/53 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C   CPA AI+  +              +ID   C   G C  ACP  AI
Sbjct: 196 CTRCLNFCPADAISSVAKK-----------IEIDPYLCHGAGSCTNACPTGAI 237


>gi|170729134|ref|YP_001763160.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella woodyi ATCC 51908]
 gi|169814481|gb|ACA89065.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           woodyi ATCC 51908]
          Length = 560

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 29/82 (35%), Gaps = 9/82 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + C  C  C + CP QA+T                       C+ CGLC+ ACP  AI
Sbjct: 426 NTQACTLCLSCVSTCPTQALTDGGDKPALH---------FVEQDCVQCGLCESACPEKAI 476

Query: 119 VEGPNFEFATETRQELYYDKER 140
                  F    RQ+    KE 
Sbjct: 477 SLTSQMNFDKAERQKRQTLKEE 498



 Score = 38.5 bits (88), Expect = 0.28,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 18/53 (33%), Gaps = 11/53 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C   CPA AI                  +ID   C   G C  ACP  AI
Sbjct: 202 CNRCLNFCPADAIQSID-----------KMIEIDPYLCHGAGSCTNACPTGAI 243


>gi|130071|sp|P13629|PHFL_DESVO RecName: Full=Periplasmic [Fe] hydrogenase large subunit; AltName:
           Full=Fe hydrogenlyase
 gi|145099|gb|AAA23373.1| [Fe]-hydrogenase alpha subunit [Desulfovibrio vulgaris]
          Length = 421

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 26/69 (37%), Gaps = 9/69 (13%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L      E +CI C  C+  CP  AI  ++G                   CI CG C   
Sbjct: 25  LFFIQIDESKCIGCDSCQQYCPTGAIFGDTGDAHKIPH---------EELCINCGQCLTH 75

Query: 113 CPVDAIVEG 121
           CPV AI E 
Sbjct: 76  CPVGAIYES 84



 Score = 40.1 bits (92), Expect = 0.10,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 16/42 (38%)

Query: 78  ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
              +  P       +     ID  KCI C  CQ+ CP  AI 
Sbjct: 10  FYEDHAPDPKADPDKLFFIQIDESKCIGCDSCQQYCPTGAIF 51


>gi|325958129|ref|YP_004289595.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
 gi|325329561|gb|ADZ08623.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
          Length = 412

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 1/64 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            EE CI C +C   CP  A+   SG +    ++  +++++D   CI C LC E CP D I
Sbjct: 173 DEETCIKCGVCSQTCPWNAVY-ISGKKPEKRSKNMLKFEVDENTCIGCNLCVEECPGDFI 231

Query: 119 VEGP 122
              P
Sbjct: 232 EPKP 235



 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 22/65 (33%), Gaps = 1/65 (1%)

Query: 60  EERCIACKLCEAICPAQAITI-ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              C  C  C   CP  A+TI E          +  R      KC  CG C + CP + +
Sbjct: 322 FAMCTRCGACTTACPEGALTISEIDKVIDGKVVKRNRISFSPDKCTECGDCVDVCPYNML 381

Query: 119 VEGPN 123
                
Sbjct: 382 KLTGE 386



 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C+ C+ C  ICP + I +E                I ++ C+ CG+C + CPVDAI   
Sbjct: 106 YCVMCQRCVDICPVEVIGVEGVKEPKHTDIDISGP-IAIVDCVGCGMCVDECPVDAITLD 164

Query: 122 PN 123
             
Sbjct: 165 EI 166



 Score = 38.5 bits (88), Expect = 0.31,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 21/66 (31%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
             E +C     C  ICP  AI + +              +     C  CG C  ACP  A
Sbjct: 280 WDESKCDHIGACARICPTDAIRVVTNTGMEVPGDAKTGAEPSFAMCTRCGACTTACPEGA 339

Query: 118 IVEGPN 123
           +     
Sbjct: 340 LTISEI 345



 Score = 37.8 bits (86), Expect = 0.46,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 12/61 (19%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            ++C  C  C  +CP   + +        G             CI C  C E CP DA+ 
Sbjct: 363 PDKCTECGDCVDVCPYNMLKLTGEKVPLKGY------------CILCDQCIEPCPKDALS 410

Query: 120 E 120
            
Sbjct: 411 M 411



 Score = 37.8 bits (86), Expect = 0.50,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            E C AC LCE +CP  AI +E                 D  KC + G C   CP DAI 
Sbjct: 243 PEVCTACGLCEKLCPVDAIDLEVELGPSKPASEEGIVW-DESKCDHIGACARICPTDAIR 301

Query: 120 EGPN 123
              N
Sbjct: 302 VVTN 305



 Score = 37.8 bits (86), Expect = 0.52,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 9/60 (15%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C+ C +C   CP  AIT++                ID   CI CG+C + CP +A+   
Sbjct: 145 DCVGCGMCVDECPVDAITLDE---------IGGSIAIDEETCIKCGVCSQTCPWNAVYIS 195



 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/23 (52%), Positives = 12/23 (52%)

Query: 101 IKCIYCGLCQEACPVDAIVEGPN 123
             CI CG CQ ACP  AI   P 
Sbjct: 7   EDCIRCGACQGACPTAAIEVSPE 29



 Score = 35.1 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 4/66 (6%)

Query: 52  ALRRYPNGEERCIACK---LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           A+   P     C  C     C  ICP  A+  E      +G     R   +   C  CG 
Sbjct: 23  AIEVSPEDVIFCDVCGGAPKCVDICPKGALKTEEITVGENGVA-QARVAYNPALCDKCGD 81

Query: 109 CQEACP 114
           C + CP
Sbjct: 82  CIDVCP 87



 Score = 33.9 bits (76), Expect = 7.2,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 9/61 (14%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
                C  C  C  +CP Q + ++ G                   C+ C  C + CPV+ 
Sbjct: 71  YNPALCDKCGDCIDVCPPQVLKLDEGKVSKIPL---------EGYCVMCQRCVDICPVEV 121

Query: 118 I 118
           I
Sbjct: 122 I 122


>gi|261402918|ref|YP_003247142.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus vulcanius M7]
 gi|261369911|gb|ACX72660.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus vulcanius M7]
          Length = 356

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 35/72 (48%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G+   R     +E C+ C +C  ICP +AI +        G     + DID  KC+ CG+
Sbjct: 19  GKIETRELLWNDEPCVGCGICADICPVEAIAMGPLGAIAKGDIIAPKLDIDEEKCVLCGM 78

Query: 109 CQEACPVDAIVE 120
           C  ACP +A+  
Sbjct: 79  CASACPFNAMDL 90



 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 35/71 (49%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R +  +      +E+C+ C +C   CPA AI ++         +     +++  KC+YC 
Sbjct: 141 RSKFVIGEVNINKEKCVLCGICADYCPADAIDLKYCYPTPSNPKPITDIEVNSDKCVYCK 200

Query: 108 LCQEACPVDAI 118
           +C+  CP +AI
Sbjct: 201 VCEFVCPHNAI 211



 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R     R     +++C+ C+ CE +CP  AI +E               +I+  KC+ CG
Sbjct: 102 RYPKIKRDIKISQDKCVLCEQCEMVCPQSAIEVEKTL-AERSKFVIGEVNINKEKCVLCG 160

Query: 108 LCQEACPVDAIVEGPNF 124
           +C + CP DAI     +
Sbjct: 161 ICADYCPADAIDLKYCY 177



 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 5/106 (4%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT----IESGPRCHDGTRRTVR 95
            G      +G+    +    EE+C+ C +C + CP  A+      +S        +    
Sbjct: 50  MGPLGAIAKGDIIAPKLDIDEEKCVLCGMCASACPFNAMDLKINGKSIKEDERYPKIKRD 109

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNF-EFATETRQELYYDKER 140
             I   KC+ C  C+  CP  AI       E +     E+  +KE+
Sbjct: 110 IKISQDKCVLCEQCEMVCPQSAIEVEKTLAERSKFVIGEVNINKEK 155



 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 8/83 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P E       F+GE  +       + C AC  C AICP  A+     P   D   +  R
Sbjct: 254 CPAEAIEVEKPFKGEVII-----DVDACNACGACVAICPCGALEF---PMPKDKAEKVPR 305

Query: 96  YDIDMIKCIYCGLCQEACPVDAI 118
             I+   C+ CG C +ACP++AI
Sbjct: 306 LIINQNLCVLCGACSKACPINAI 328



 Score = 38.2 bits (87), Expect = 0.44,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 8/80 (10%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQ--------AITIESGPRCHDGTRRTVRYDIDMIKCI 104
           +       ++C+ CK+CE +CP             ++  P+         +  +D   C+
Sbjct: 186 ITDIEVNSDKCVYCKVCEFVCPHNAIEVICYKCPMMKRIPKAELYKDINGKTVVDKDACV 245

Query: 105 YCGLCQEACPVDAIVEGPNF 124
            CG C   CP +AI     F
Sbjct: 246 TCGWCAFICPAEAIEVEKPF 265



 Score = 37.8 bits (86), Expect = 0.51,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 8/62 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++ C+ C  C  ICPA+AI +E   +            ID+  C  CG C   CP  A+
Sbjct: 240 DKDACVTCGWCAFICPAEAIEVEKPFKGE--------VIIDVDACNACGACVAICPCGAL 291

Query: 119 VE 120
             
Sbjct: 292 EF 293



 Score = 35.5 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/20 (55%), Positives = 15/20 (75%)

Query: 103 CIYCGLCQEACPVDAIVEGP 122
           C+ CG+C + CPV+AI  GP
Sbjct: 33  CVGCGICADICPVEAIAMGP 52


>gi|218288562|ref|ZP_03492839.1| formate dehydrogenase, alpha subunit [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218241219|gb|EED08394.1| formate dehydrogenase, alpha subunit [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 986

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 5/80 (6%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDM 100
             +  + +   Y     +CI C  C   C     ++ ++I+                I+ 
Sbjct: 132 KPYEVDMSHPFYRYDPSQCILCGRCVEACQNLQVSEVLSIDWDREIPRVIWDNDVP-INE 190

Query: 101 IKCIYCGLCQEACPVDAIVE 120
             C+ CG C   CP +A++E
Sbjct: 191 SSCVSCGHCVTVCPCNALME 210



 Score = 42.8 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 28/83 (33%), Gaps = 9/83 (10%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIAC----KLCEAICPAQAITIES-----GPRCHDGT 90
           K   +   R E   R   N +  C  C      C       A+ I+        + ++  
Sbjct: 78  KSVAARYARKEAMDRILKNHDLYCTVCDNNNGNCVVHNTTMAMDIDHQSYPFREKPYEVD 137

Query: 91  RRTVRYDIDMIKCIYCGLCQEAC 113
                Y  D  +CI CG C EAC
Sbjct: 138 MSHPFYRYDPSQCILCGRCVEAC 160


>gi|187735302|ref|YP_001877414.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Akkermansia muciniphila ATCC BAA-835]
 gi|187425354|gb|ACD04633.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Akkermansia muciniphila ATCC BAA-835]
          Length = 1192

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 25/88 (28%), Gaps = 16/88 (18%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHD 88
           TS   +   AL         CI C  C A+CP                A           
Sbjct: 682 TSQYEKRNLALDLPEWDPTLCIQCGKCTAVCPHAVIRSKFFSPDALANAPEGFECLDAKH 741

Query: 89  GTRRTVRY--DIDMIKCIYCGLCQEACP 114
              +  ++   I    C  C LC + CP
Sbjct: 742 PDWKGEKFVIQISPNDCTGCTLCADVCP 769



 Score = 33.9 bits (76), Expect = 6.6,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 8/19 (42%)

Query: 100 MIKCIYCGLCQEACPVDAI 118
              CI CG C   CP   I
Sbjct: 699 PTLCIQCGKCTAVCPHAVI 717


>gi|171185979|ref|YP_001794898.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Thermoproteus neutrophilus V24Sta]
 gi|170935191|gb|ACB40452.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Thermoproteus neutrophilus V24Sta]
          Length = 89

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 10/65 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              +C+ C +C   CP   I  E G +            ID + C  CG+C + CPV AI
Sbjct: 33  DLAKCVDCGICWLYCPESVIEWEKGRKIA----------IDYMYCKGCGICADVCPVKAI 82

Query: 119 VEGPN 123
              P 
Sbjct: 83  SMEPE 87


>gi|83644718|ref|YP_433153.1| electron transport complex protein RnfC [Hahella chejuensis KCTC
           2396]
 gi|83632761|gb|ABC28728.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Hahella
           chejuensis KCTC 2396]
          Length = 821

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 10/102 (9%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEA 112
           P+  + CI C LC   CPA     E  P+      +   +D     ++  CI CG C   
Sbjct: 363 PDPAQACIRCGLCAEACPA-----ELLPQQLYWFSKAQEFDKAENYNLFDCIECGACSYV 417

Query: 113 CPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVR 154
           CP  +I     + +A    +    ++++     +R+E    R
Sbjct: 418 CP-SSIPLVQYYRYAKHQIRMTVQEQQKSDKARERFEFRQAR 458


>gi|78355128|ref|YP_386577.1| ferredoxin hydrogenase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78217533|gb|ABB36882.1| Ferredoxin hydrogenase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 421

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 30/81 (37%), Gaps = 14/81 (17%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            L       E+CI C  C+  CP  AI  ++G                   CI CG C  
Sbjct: 24  ELFFIQIDPEKCIGCDTCQEYCPTGAIFGDTGSAHSIPH---------EEICINCGQCLT 74

Query: 112 ACPVDAIVEGPNFEFATETRQ 132
            CPV AI     +E  +  R+
Sbjct: 75  HCPVGAI-----YEVQSWVRE 90



 Score = 40.5 bits (93), Expect = 0.077,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 16/42 (38%)

Query: 78  ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
             ++  P             ID  KCI C  CQE CP  AI 
Sbjct: 10  QYVDQSPDPRANPDELFFIQIDPEKCIGCDTCQEYCPTGAIF 51


>gi|24375408|ref|NP_719451.1| periplasmic Fe hydrogenase, large subunit [Shewanella oneidensis
           MR-1]
 gi|24350246|gb|AAN56895.1|AE015824_6 periplasmic Fe hydrogenase, large subunit [Shewanella oneidensis
           MR-1]
          Length = 410

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              +C  C  C+  CP  AI   SG            + ID  KC+ CG C   CP  AI
Sbjct: 18  NASKCKGCDACKQFCPTHAINGASG----------AVHSIDEDKCLSCGQCLINCPFSAI 67

Query: 119 VEGP 122
            E  
Sbjct: 68  EETH 71



 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 98  IDMIKCIYCGLCQEACPVDAIV 119
           I+  KC  C  C++ CP  AI 
Sbjct: 17  INASKCKGCDACKQFCPTHAIN 38


>gi|83309269|ref|YP_419533.1| FdhA-II protein [Magnetospirillum magneticum AMB-1]
 gi|82944110|dbj|BAE48974.1| FdhA-II protein [Magnetospirillum magneticum AMB-1]
          Length = 891

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 30/109 (27%), Gaps = 16/109 (14%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
              + GA  +    F         P              A+R        CI C LC   
Sbjct: 105 FLGWAGALGVTASRF--------APSAAPVRPDTSHPAMAVRLD-----ACIHCTLCLRA 151

Query: 73  C---PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C       +   SG              +    C+ CG C +ACP  A+
Sbjct: 152 CREVQVNDVIGMSGRGADSRITFDFAQSMGASSCVGCGECVQACPTGAL 200


>gi|312137197|ref|YP_004004534.1| 4fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermus fervidus DSM 2088]
 gi|311224916|gb|ADP77772.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermus fervidus DSM 2088]
          Length = 341

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 35/71 (49%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R E         +++CI C +CE +CPA AI IE                +D  KC+YC 
Sbjct: 131 RSELVTGEIEIDKDKCIFCGVCEEMCPAAAIEIEWKEPTSIDPSTANDIRVDEKKCVYCM 190

Query: 108 LCQEACPVDAI 118
           +C+  CPV+AI
Sbjct: 191 ICKRVCPVNAI 201



 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 5/81 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-----DIDMIKCIYCGLCQEAC 113
            E++C+ C +C+ +CP  AI +      +               ID   C+ CG CQE C
Sbjct: 182 DEKKCVYCMICKRVCPVNAIKVICKVCPYGEYEIKEPEIKGSTYIDSELCVNCGWCQETC 241

Query: 114 PVDAIVEGPNFEFATETRQEL 134
           PVDAI     FE   E  +EL
Sbjct: 242 PVDAIKIEKPFEGTVEINEEL 262



 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 3/87 (3%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
               +  E          +         EE C  C  C  +CP  A++    P+      
Sbjct: 232 VNCGWCQETCPVDAIKIEKPFEGTVEINEELCQGCATCVEVCPCNALSF---PKPSKPGE 288

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAI 118
           +  +  I+   C+YCG C++ACP DAI
Sbjct: 289 KPQKLHIEEKFCVYCGACEKACPTDAI 315



 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 5/87 (5%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPR----CHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            E++C+ C +C +ICP  A+ ++   +      +        +ID  KCIYC  C+  CP
Sbjct: 59  DEDKCVLCGMCSSICPYDALDLQIDKKSIKDIPEYPTLIKSSEIDEEKCIYCKSCEIVCP 118

Query: 115 VDAIVEGPNF-EFATETRQELYYDKER 140
             AI       E +     E+  DK++
Sbjct: 119 QGAITITRELPERSELVTGEIEIDKDK 145



 Score = 40.1 bits (92), Expect = 0.097,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 8/64 (12%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               E C+ C  C+  CP  AI IE               +I+   C  C  C E CP +
Sbjct: 225 YIDSELCVNCGWCQETCPVDAIKIEK--------PFEGTVEINEELCQGCATCVEVCPCN 276

Query: 117 AIVE 120
           A+  
Sbjct: 277 ALSF 280



 Score = 37.4 bits (85), Expect = 0.62,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R     R     EE+C  C LCE ICP  AI +   P          +  +D  KC+ CG
Sbjct: 9   RSGKETRELIFNEEKCNVCGLCEKICPVNAIEVSP-PGAVVREENISKLILDEDKCVLCG 67

Query: 108 LCQEACPVDAIVEG 121
           +C   CP DA+   
Sbjct: 68  MCSSICPYDALDLQ 81


>gi|307721745|ref|YP_003892885.1| NADH dehydrogenase subunit G [Sulfurimonas autotrophica DSM 16294]
 gi|306979838|gb|ADN09873.1| NADH dehydrogenase subunit G [Sulfurimonas autotrophica DSM 16294]
          Length = 747

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 24/66 (36%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
                 CI C+ C  +C           +    +   +  + + + C +CG C   CPV 
Sbjct: 142 NYDPALCIMCEKCVHVCNEVIGDDAIEVKFGGYSSVIIPKNAETLDCTFCGECIAVCPVG 201

Query: 117 AIVEGP 122
           A+V   
Sbjct: 202 ALVSSD 207


>gi|304394558|ref|ZP_07376477.1| dihydropyrimidine dehydrogenase [NADP+] [Ahrensia sp. R2A130]
 gi|303293219|gb|EFL87600.1| dihydropyrimidine dehydrogenase [NADP+] [Ahrensia sp. R2A130]
          Length = 437

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 6/81 (7%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    +++CI+C  C   C     + ++     DG R    +++   +C+ 
Sbjct: 330 QYLNLNYVTKAQIDQDKCISCGRCHIACED--TSHQAITNIVDGKR---HFEVIDEECVG 384

Query: 106 CGLCQEACPV-DAIVEGPNFE 125
           C LC   CPV D I      E
Sbjct: 385 CNLCVNVCPVEDCITMVEMAE 405


>gi|303242578|ref|ZP_07329055.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2]
 gi|302589882|gb|EFL59653.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2]
          Length = 624

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/99 (27%), Positives = 38/99 (38%), Gaps = 15/99 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            ++  F+ +   +   ++  T         L+R       C  C  C  ICP  AI+   
Sbjct: 541 TIKN-FREEYEAHIREKRCPTGNC----QKLKRITIEAALCKGCSKCSRICPVNAISG-- 593

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
                   +    Y ID  KCI CG C  +C   AIVEG
Sbjct: 594 --------KVKEPYVIDQSKCIKCGACVGSCAFHAIVEG 624


>gi|269139125|ref|YP_003295826.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Edwardsiella tarda EIB202]
 gi|267984786|gb|ACY84615.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Edwardsiella tarda EIB202]
 gi|304559051|gb|ADM41715.1| Pyruvate-flavodoxin oxidoreductase [Edwardsiella tarda FL6-60]
          Length = 1176

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 35/135 (25%), Gaps = 32/135 (23%)

Query: 31  KTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI-------- 80
             +   P        +   +   A          C  C  C A CP  AI          
Sbjct: 655 PVSAFPPDGTWPVGTTRWEKRNIAEAIPIWQPALCTQCNHCVAACPHAAIRAKVVAPAAL 714

Query: 81  ----------ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP--------VDAIVEGP 122
                     E   R   G R      +    C  C LC   CP        V AI   P
Sbjct: 715 EHAPATLESLEVRARDLRGERY--VLQVAPEDCTGCNLCVTVCPAADRQDPSVKAINMQP 772

Query: 123 NFEFATETRQELYYD 137
               A   R++ +YD
Sbjct: 773 R--LAHLAREKAHYD 785


>gi|288940310|ref|YP_003442550.1| RnfABCDGE type electron transport complex subunit C [Allochromatium
           vinosum DSM 180]
 gi|288895682|gb|ADC61518.1| electron transport complex, RnfABCDGE type, C subunit
           [Allochromatium vinosum DSM 180]
          Length = 528

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 11/101 (10%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C  C  +CP + +  +               D ++  CI CG C + CP   I    
Sbjct: 385 CIRCGRCAEVCPTRLLPQQMYWNARAKD-LDRVQDYNLFDCIECGCCAQVCPSH-IPLVQ 442

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            + +A        + +E+     ++ +SE  R        R
Sbjct: 443 YYRYAKTE----IWAREQ-----EKRKSEQARARHAAKQAR 474


>gi|239994544|ref|ZP_04715068.1| electron transport complex protein RnfC [Alteromonas macleodii ATCC
           27126]
          Length = 790

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 37/115 (32%), Gaps = 3/115 (2%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P  K +       +  L    N E  CI C  C   CPA  +  +              
Sbjct: 184 IPVVKTTNCLLVPAKKELV-DDNAERPCIRCSACADACPASLLPQQMFWHAKAKE-YDKA 241

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWES 150
            + D+  CI CG C   CP   I     +  A    +    +K +      R+E+
Sbjct: 242 EEYDLFDCIECGACAYVCP-SEIPLVHYYRQAKSEIRIQRDEKNKAEKAKQRFEA 295


>gi|222099619|ref|YP_002534187.1| Iron-sulfur cluster-binding protein [Thermotoga neapolitana DSM
           4359]
 gi|221572009|gb|ACM22821.1| Iron-sulfur cluster-binding protein [Thermotoga neapolitana DSM
           4359]
          Length = 310

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 13/75 (17%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
              ++       +C+ C+LCE  CPA AI I S               ID  KCI C +C
Sbjct: 247 RFFVKYPRIDTGKCVKCRLCEERCPASAIDISSQ-------------RIDYQKCIRCYVC 293

Query: 110 QEACPVDAIVEGPNF 124
            E CP DAI    NF
Sbjct: 294 HEVCPHDAIKLVRNF 308


>gi|149201541|ref|ZP_01878515.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Roseovarius sp.
           TM1035]
 gi|149144589|gb|EDM32618.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Roseovarius sp.
           TM1035]
          Length = 651

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 9/82 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E C  C  C ++CP+ A+                +       C+ CG+C   CP  AI
Sbjct: 499 NTESCTLCLSCVSLCPSGALMDNEDK---------PQLRFQEDACLQCGICATICPEKAI 549

Query: 119 VEGPNFEFATETRQELYYDKER 140
              P          ++  ++E 
Sbjct: 550 TLEPRMNLDDTALTQVVLNEEE 571



 Score = 39.3 bits (90), Expect = 0.16,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 11/55 (20%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             C  C  ICP  AI+ +                ID + C  CG C   CP  AI
Sbjct: 277 TGCSKCLDICPTGAISPDGD-----------HVSIDPMICAGCGACAARCPSGAI 320


>gi|153833468|ref|ZP_01986135.1| sulfite reductase, subunit C [Vibrio harveyi HY01]
 gi|269964103|ref|ZP_06178405.1| hypothetical protein VME_47890 [Vibrio harveyi 1DA3]
 gi|148870243|gb|EDL69178.1| sulfite reductase, subunit C [Vibrio harveyi HY01]
 gi|269831162|gb|EEZ85319.1| hypothetical protein VME_47890 [Vibrio harveyi 1DA3]
          Length = 333

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 27/87 (31%), Gaps = 8/87 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +    +    G   + +      RCI C  C   C   A+   S             
Sbjct: 153 CPNDCAKANMADFGILGIAKINFESHRCIGCGACVKACAHHAVDCLSLKDGKAVK----- 207

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGP 122
              +  KCI CG C  ACP  A    P
Sbjct: 208 ---EESKCIGCGECVLACPTLAWRRDP 231



 Score = 33.5 bits (75), Expect = 8.8,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 1/55 (1%)

Query: 67  KLCEAICPAQAITIESGPRC-HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           K    +  A      +       G     + + +  +CI CG C +AC   A+  
Sbjct: 143 KYHLKMVMAGCPNDCAKANMADFGILGIAKINFESHRCIGCGACVKACAHHAVDC 197


>gi|170741450|ref|YP_001770105.1| formate dehydrogenase subunit alpha [Methylobacterium sp. 4-46]
 gi|168195724|gb|ACA17671.1| formate dehydrogenase, alpha subunit [Methylobacterium sp. 4-46]
          Length = 988

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 3/98 (3%)

Query: 25  RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESG 83
            +F+     +     +     R+  + +        + CI C LC   C   Q   +   
Sbjct: 174 SHFWSQADHVGVSESRFPAEERWATDASHPAMRVNLDACIQCNLCVRACREVQVNDVIGM 233

Query: 84  PRCHDGTRRTVRYDIDM--IKCIYCGLCQEACPVDAIV 119
              +   +    +D  M    C+ CG C +ACP  A++
Sbjct: 234 AYRNADAKVVFDFDDPMGSSTCVACGECVQACPTGALM 271


>gi|323704595|ref|ZP_08116173.1| cobyrinic acid a,c-diamide synthase [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323536057|gb|EGB25830.1| cobyrinic acid a,c-diamide synthase [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 289

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 37/110 (33%), Gaps = 22/110 (20%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE-------RCIACKLCEAIC 73
              L    + K   +   E  + +  F GE        G+E       +CI C LCE +C
Sbjct: 19  ATTLSEIIENKVMADCDVEAPNLNILFNGEIQKVDNFYGKEVALIDEEKCIKCGLCETLC 78

Query: 74  PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
              AI+                Y ++   C  CGLC   CP  AI     
Sbjct: 79  RFDAISD---------------YKVNPYYCEGCGLCSYKCPNGAIKMIEE 113


>gi|303328508|ref|ZP_07358945.1| iron-sulfur cluster-binding/ATPase domain protein [Desulfovibrio
           sp. 3_1_syn3]
 gi|302861502|gb|EFL84439.1| iron-sulfur cluster-binding/ATPase domain protein [Desulfovibrio
           sp. 3_1_syn3]
          Length = 303

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 11/61 (18%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           ++ C+ C  C  +C   A+  E G            + ID + C  CG+C+  CP  AI 
Sbjct: 65  QDLCVQCGRCADLCRFGAVRNEDG-----------HFVIDPLDCEGCGVCRALCPARAID 113

Query: 120 E 120
            
Sbjct: 114 F 114


>gi|226950172|ref|YP_002805263.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum A2 str.
           Kyoto]
 gi|226842326|gb|ACO84992.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum A2 str.
           Kyoto]
          Length = 1192

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 24/88 (27%), Gaps = 16/88 (18%)

Query: 51  HALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY 96
            A+       ++CI C  C  +CP                A                   
Sbjct: 677 IAINVPEWQLDKCIQCNQCSYVCPHAVIRPILLTDEEVKNAPEGFKSKPAVGAKGLNFTM 736

Query: 97  DIDMIKCIYCGLCQEACP--VDAIVEGP 122
            I    C  CG C + CP    A++  P
Sbjct: 737 AISPYDCTGCGNCADVCPAKEKALIMKP 764


>gi|298529931|ref|ZP_07017333.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509305|gb|EFI33209.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 789

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 31/95 (32%), Gaps = 6/95 (6%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            +            +F G +      +    C+ C LC+A+CP  AI     P+      
Sbjct: 700 YSRMTQEYYDPRITQFEGLNGCAEQCSSCGSCMDCGLCDAVCPTGAIERTDLPQGKFQRA 759

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
                     KCI CG C + CP        NF  
Sbjct: 760 AD------PEKCIGCGFCGKCCPCGIWDLVENFPM 788


>gi|225569490|ref|ZP_03778515.1| hypothetical protein CLOHYLEM_05576 [Clostridium hylemonae DSM
           15053]
 gi|225161698|gb|EEG74317.1| hypothetical protein CLOHYLEM_05576 [Clostridium hylemonae DSM
           15053]
          Length = 719

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 9/71 (12%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C  C  +C               G    ++   D   C++CG C   CPVD+I E  
Sbjct: 26  CIKCGQCRQVC---------EREVAVGRLYDLKSTNDTAICVHCGQCANVCPVDSIKEVY 76

Query: 123 NFEFATETRQE 133
            +    E  ++
Sbjct: 77  EYRKVKEAVED 87


>gi|170755903|ref|YP_001782366.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum B1 str.
           Okra]
 gi|169121115|gb|ACA44951.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum B1 str.
           Okra]
          Length = 1192

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 24/88 (27%), Gaps = 16/88 (18%)

Query: 51  HALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY 96
            A+       ++CI C  C  +CP                A                   
Sbjct: 677 IAINVPEWQLDKCIQCNQCSYVCPHAVIRPILLTDEEVKNAPEGFKSKPAVGAKGLNFTM 736

Query: 97  DIDMIKCIYCGLCQEACP--VDAIVEGP 122
            I    C  CG C + CP    A++  P
Sbjct: 737 AISPYDCTGCGNCADVCPAKEKALIMKP 764


>gi|153940490|ref|YP_001392038.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum F str.
           Langeland]
 gi|152936386|gb|ABS41884.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum F str.
           Langeland]
 gi|295320051|gb|ADG00429.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum F str.
           230613]
          Length = 1192

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 24/88 (27%), Gaps = 16/88 (18%)

Query: 51  HALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY 96
            A+       ++CI C  C  +CP                A                   
Sbjct: 677 IAINVPEWQLDKCIQCNQCSYVCPHAVIRPILLTDEEVKNAPEGFKSKPAVGAKGLNFTM 736

Query: 97  DIDMIKCIYCGLCQEACP--VDAIVEGP 122
            I    C  CG C + CP    A++  P
Sbjct: 737 AISPYDCTGCGNCADVCPAKEKALIMKP 764


>gi|149908810|ref|ZP_01897470.1| hypothetical iron-sulfur cluster-binding protein [Moritella sp.
           PE36]
 gi|149808084|gb|EDM68025.1| hypothetical iron-sulfur cluster-binding protein [Moritella sp.
           PE36]
          Length = 566

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 9/80 (11%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C  C  C A+CP +A+    G                   C+ CGLC++ACP   +  
Sbjct: 432 DDCTLCMGCVAVCPTRALHAVGGRPG---------LQFKEQDCVQCGLCEKACPEQVLTL 482

Query: 121 GPNFEFATETRQELYYDKER 140
            P   + TE+RQ      E 
Sbjct: 483 KPGVNWDTESRQTAVMIHEE 502



 Score = 35.5 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 33/103 (32%), Gaps = 27/103 (26%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG-PNF 124
           C  C   CPA A++                 +I+   C   G C  ACP +AI    P  
Sbjct: 195 CTRCVDACPAGALSSNGHA-----------IEINPFLCQGVGTCATACPTEAITYALPEP 243

Query: 125 EFATETRQELYYD-----------KERLLNNGDRWESEIVRNI 156
           E      Q   Y            K  +L  G+R E  +   +
Sbjct: 244 EKT----QNFIYRLLNSYQMAGGVKPTILFFGNRDEETVAAKL 282



 Score = 33.5 bits (75), Expect = 9.9,   Method: Composition-based stats.
 Identities = 6/23 (26%), Positives = 8/23 (34%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIV 119
           +     C  C  C   CP  A+ 
Sbjct: 428 ECKTDDCTLCMGCVAVCPTRALH 450


>gi|46580508|ref|YP_011316.1| iron-sulfur cluster-binding/ATPase domain-containing protein
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|120602175|ref|YP_966575.1| cobyrinic acid a,c-diamide synthase [Desulfovibrio vulgaris DP4]
 gi|46449927|gb|AAS96576.1| iron-sulfur cluster-binding/ATPase domain protein [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|120562404|gb|ABM28148.1| Cobyrinic acid a,c-diamide synthase [Desulfovibrio vulgaris DP4]
 gi|311234248|gb|ADP87102.1| iron-sulfur cluster-binding/ATPase domain-containing protein
           [Desulfovibrio vulgaris RCH1]
          Length = 287

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 20/64 (31%), Gaps = 12/64 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E CI+C LC   C   AI     P             +    C  CG+C   CP  A 
Sbjct: 64  EPEACISCGLCTTHCRYGAIPQGYAP------------QVAPEHCEGCGVCAHVCPTGAA 111

Query: 119 VEGP 122
               
Sbjct: 112 RLSD 115


>gi|304314561|ref|YP_003849708.1| energy-converting hydrogenase A, subunit Q [Methanothermobacter
           marburgensis str. Marburg]
 gi|302588020|gb|ADL58395.1| energy-converting hydrogenase A, subunit Q [Methanothermobacter
           marburgensis str. Marburg]
          Length = 407

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 30/88 (34%), Gaps = 6/88 (6%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P++                       C  C  C + C   AI + S  +        V 
Sbjct: 26  CPYDAIRMKTILGEPVRENVPVINPRICRGCGACVSACRTGAIHLTSSGKTG------VH 79

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPN 123
            +ID  KC+ CG C  ACP +AI  G  
Sbjct: 80  SEIDEDKCVRCGYCARACPTEAIKYGEI 107



 Score = 41.6 bits (96), Expect = 0.038,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 12/62 (19%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C  C +C   CP  A+ ++               ++D   CI CG CQ+ CPV A+
Sbjct: 350 DHVICQRCGVCVNHCPVDAMAMDGE------------VEVDDDTCILCGECQDICPVTAV 397

Query: 119 VE 120
             
Sbjct: 398 KL 399



 Score = 41.2 bits (95), Expect = 0.052,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 11/79 (13%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI-----------DMIKCIYCGLCQE 111
           C+ C  C  +CP  A+ I          R  +   I           D + C  CG+C  
Sbjct: 303 CVFCGRCRGVCPVDAVEITEEGFRASDGRIYLERRILRGPRSGSVEVDHVICQRCGVCVN 362

Query: 112 ACPVDAIVEGPNFEFATET 130
            CPVDA+      E   +T
Sbjct: 363 HCPVDAMAMDGEVEVDDDT 381



 Score = 40.5 bits (93), Expect = 0.070,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           +RC  C LC   CP  AI +           R     I+   C  CG C  AC   AI  
Sbjct: 14  DRCFGCVLCREACPYDAIRM---KTILGEPVRENVPVINPRICRGCGACVSACRTGAIHL 70

Query: 121 G 121
            
Sbjct: 71  T 71



 Score = 38.5 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 11/63 (17%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCI C LC   CP   I   +                    C++CG C+  CPVDA+  
Sbjct: 272 ERCIGCGLCVTECPVGVIEPVTPAPVEIK-----------DGCVFCGRCRGVCPVDAVEI 320

Query: 121 GPN 123
              
Sbjct: 321 TEE 323



 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 20/63 (31%), Gaps = 8/63 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +  CI C  C  +CP+               +      ID   C  C  C + CP  AI
Sbjct: 121 NQRDCIGCMTCTRVCPS--------RGAIKVGKINRLPYIDPSYCARCEECMDVCPSAAI 172

Query: 119 VEG 121
              
Sbjct: 173 KYS 175



 Score = 33.9 bits (76), Expect = 6.6,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 11/19 (57%)

Query: 100 MIKCIYCGLCQEACPVDAI 118
             +CI CGLC   CPV  I
Sbjct: 271 EERCIGCGLCVTECPVGVI 289


>gi|290892979|ref|ZP_06555969.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria
           monocytogenes FSL J2-071]
 gi|290557555|gb|EFD91079.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria
           monocytogenes FSL J2-071]
          Length = 1215

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/105 (26%), Positives = 35/105 (33%), Gaps = 16/105 (15%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCH 87
              T+   +   AL       E C  C  C  +CP  AI              E      
Sbjct: 669 PPGTAAYEKRGIALEVPEWISENCTMCNECAFVCPHAAIRPILTDEEEMESAPEGFMTRE 728

Query: 88  DGTRRTVRYDID--MIKCIYCGLCQEACPV--DAIVEGPNFEFAT 128
              +  +RY I    + C  C LC E CP    A+V  P  E AT
Sbjct: 729 MRGKDGLRYRIQVSPMDCTGCNLCAETCPAKDKALVMKPFEEVAT 773



 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 5/80 (6%)

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV--EGPNFEFATETRQ 132
           + A    +      G    V   I    C  C  C   CP  AI        E   E+  
Sbjct: 665 SGAYPPGTAAYEKRGIALEVPEWI-SENCTMCNECAFVCPHAAIRPILTDEEEM--ESAP 721

Query: 133 ELYYDKERLLNNGDRWESEI 152
           E +  +E    +G R+  ++
Sbjct: 722 EGFMTREMRGKDGLRYRIQV 741


>gi|187778667|ref|ZP_02995140.1| hypothetical protein CLOSPO_02262 [Clostridium sporogenes ATCC
           15579]
 gi|187772292|gb|EDU36094.1| hypothetical protein CLOSPO_02262 [Clostridium sporogenes ATCC
           15579]
          Length = 1192

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 24/88 (27%), Gaps = 16/88 (18%)

Query: 51  HALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY 96
            A+       ++CI C  C  +CP                A                   
Sbjct: 677 IAINVPEWQLDKCIQCNQCSYVCPHAVIRPVLLSDEEVKNAPEGFKSKPAVGAKGLNFTM 736

Query: 97  DIDMIKCIYCGLCQEACP--VDAIVEGP 122
            I    C  CG C + CP    A++  P
Sbjct: 737 AISPYDCTGCGNCADVCPAKEKALIMKP 764


>gi|152995571|ref|YP_001340406.1| RnfABCDGE type electron transport complex subunit C [Marinomonas
           sp. MWYL1]
 gi|150836495|gb|ABR70471.1| electron transport complex, RnfABCDGE type, C subunit [Marinomonas
           sp. MWYL1]
          Length = 981

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 34/98 (34%), Gaps = 10/98 (10%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C +CE  CPA  +  +                 ++  CI CG C   CP  +I  
Sbjct: 371 QACIRCGMCEQACPAS-LLPQQLLWFSKSQEFEKAEHHNLFDCIECGACSYVCP-SSIPL 428

Query: 121 GPNFEFAT----ETRQELYYDKERLLNNGDRWESEIVR 154
              +        E R+     K  L     R+E+   R
Sbjct: 429 VQYYRHTKSSIREAREANV--KSDLAK--QRFEARKAR 462


>gi|118592955|ref|ZP_01550343.1| dihydropyrimidine dehydrogenase [Stappia aggregata IAM 12614]
 gi|118434489|gb|EAV41142.1| dihydropyrimidine dehydrogenase [Stappia aggregata IAM 12614]
          Length = 437

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 6/95 (6%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI C  C   C     + ++     DG R+    D    +C+ 
Sbjct: 329 QYLNLNYIAKAKIDQDLCIECGRCHIACED--TSHQAITNMVDGVRKFEVID---EECVG 383

Query: 106 CGLCQEACP-VDAIVEGPNFEFATETRQELYYDKE 139
           C LC   CP    I   P    + + R +   +K+
Sbjct: 384 CNLCVNVCPIEGCITMEPMAAGSIDPRTKKPVEKD 418


>gi|259416891|ref|ZP_05740811.1| 4Fe-4S ferredoxin, iron-sulfur binding [Silicibacter sp. TrichCH4B]
 gi|259348330|gb|EEW60107.1| 4Fe-4S ferredoxin, iron-sulfur binding [Silicibacter sp. TrichCH4B]
          Length = 192

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 35/104 (33%), Gaps = 15/104 (14%)

Query: 19  AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78
           A  + L      +TT   P E   ++    G      Y    E C  C+ C   CP+ AI
Sbjct: 96  ALAVLLEEPVTEETTRALPQEPQDSAEANAG------YVTISEGCTLCQHCIWSCPSDAI 149

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            +                +I    C  CGLC  ACP   +   P
Sbjct: 150 HLGEQGDT---------LEIRDRHCTGCGLCASACPERVLAILP 184


>gi|239905934|ref|YP_002952673.1| Fe hydrogenase large subunit [Desulfovibrio magneticus RS-1]
 gi|239795798|dbj|BAH74787.1| Fe hydrogenase large subunit [Desulfovibrio magneticus RS-1]
          Length = 421

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 25/68 (36%), Gaps = 9/68 (13%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L      E +CI C  C   CP  AI  E+G                   CI CG C   
Sbjct: 25  LFFIKVDESKCIGCDSCMGYCPTGAIYGETGEPHKIPHV---------EACINCGQCLTH 75

Query: 113 CPVDAIVE 120
           CPV AI E
Sbjct: 76  CPVSAIYE 83



 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 13/42 (30%)

Query: 78  ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
                 P       +     +D  KCI C  C   CP  AI 
Sbjct: 10  FYEMQSPDPKADPDKLFFIKVDESKCIGCDSCMGYCPTGAIY 51


>gi|258511892|ref|YP_003185326.1| formate dehydrogenase, alpha subunit [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478618|gb|ACV58937.1| formate dehydrogenase, alpha subunit [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 986

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 5/80 (6%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDM 100
             +  + +   Y     +CI C  C   C     ++ ++I+                I+ 
Sbjct: 132 KPYEVDMSHPFYRYDPSQCILCGRCVEACQNLQVSEVLSIDWDREIPRVIWDNDVP-INE 190

Query: 101 IKCIYCGLCQEACPVDAIVE 120
             C+ CG C   CP +A++E
Sbjct: 191 SSCVSCGHCVTVCPCNALME 210



 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 28/83 (33%), Gaps = 9/83 (10%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIAC----KLCEAICPAQAITIES-----GPRCHDGT 90
           K   +   R E   R   N +  C  C      C       A+ I+        + ++  
Sbjct: 78  KSVAARYARKEAMDRILKNHDLYCTVCDNNNGNCVVHNTTMAMDIDHQSYPFREKPYEVD 137

Query: 91  RRTVRYDIDMIKCIYCGLCQEAC 113
                Y  D  +CI CG C EAC
Sbjct: 138 MSHPFYRYDPSQCILCGRCVEAC 160


>gi|148380718|ref|YP_001255259.1| pyruvate-flavodoxin oxidoreductase [Clostridium botulinum A str.
           ATCC 3502]
 gi|153932227|ref|YP_001385002.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum A str.
           ATCC 19397]
 gi|153936104|ref|YP_001388472.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum A str.
           Hall]
 gi|148290202|emb|CAL84321.1| pyruvate-flavodoxin oxidoreductase [Clostridium botulinum A str.
           ATCC 3502]
 gi|152928271|gb|ABS33771.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum A str.
           ATCC 19397]
 gi|152932018|gb|ABS37517.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum A str.
           Hall]
          Length = 1192

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 24/88 (27%), Gaps = 16/88 (18%)

Query: 51  HALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY 96
            A+       ++CI C  C  +CP                A                   
Sbjct: 677 IAINVPEWQLDKCIQCNQCSYVCPHAVIRPVLLSDEEVKNAPKGFESKPAAGAKGLNFTM 736

Query: 97  DIDMIKCIYCGLCQEACP--VDAIVEGP 122
            I    C  CG C + CP    A+V  P
Sbjct: 737 AISPYDCTGCGNCADVCPAKEKALVMKP 764


>gi|20093689|ref|NP_613536.1| heterodisulfide reductase, subunit A [Methanopyrus kandleri AV19]
 gi|190358780|sp|Q8TYP4|HDRA1_METKA RecName: Full=CoB--CoM heterodisulfide reductase iron-sulfur
           subunit A 1
 gi|19886574|gb|AAM01466.1| Heterodisulfide reductase, subunit A [Methanopyrus kandleri AV19]
          Length = 669

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 31/89 (34%), Gaps = 9/89 (10%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAIT-------IESGPRCHDGTRRTVRYDI 98
            F      +     E+ C  C +C  +CP +                        + Y I
Sbjct: 232 NFEVTIEKKPRYVDEDACTGCGVCAEVCPIEVPNEFDLGIGTRKAIYVPFPQAMPLVYTI 291

Query: 99  DMIKCIYCGLCQEACPV--DAIVEGPNFE 125
           DM  CI CGLC+EACP    AI      E
Sbjct: 292 DMEHCIQCGLCEEACPQDPPAIDFDQEPE 320



 Score = 42.4 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 25/70 (35%), Gaps = 7/70 (10%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             L      E+ C  C  C  +CP  AI +        G R     D+    C  CG C 
Sbjct: 581 IELITATVDEDVCGGCGACAQVCPFDAIEMVEKD----GKRVAEVQDVA---CQGCGQCA 633

Query: 111 EACPVDAIVE 120
            ACP  A+  
Sbjct: 634 AACPSGAMQL 643


>gi|320658802|gb|EFX26476.1| electron transport complex protein RnfB [Escherichia coli O55:H7
           str. USDA 5905]
          Length = 192

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 26/76 (34%), Gaps = 10/76 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   +             + +  + C  C LC + CP   I
Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSVLCTGCNLCVDPCPTHCI 162

Query: 119 VEGPNFEFATETRQEL 134
              P  E     + +L
Sbjct: 163 SLQPVAETPDSWKWDL 178



 Score = 35.5 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C  C +ACPVDAI
Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132


>gi|255528595|ref|ZP_05395364.1| nitroreductase [Clostridium carboxidivorans P7]
 gi|255507710|gb|EET84181.1| nitroreductase [Clostridium carboxidivorans P7]
          Length = 273

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 16/103 (15%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 E+C+ C LC   C  + I +                 I+ + C  CG C   CP
Sbjct: 1   MMKVDTEKCVGCGLCVKDCFPKDIEMVDNKA-----------KINNVTCFKCGHCIAVCP 49

Query: 115 VDAIVEGPNFEFAT---ETRQELYYDKERLLNNGDRWESEIVR 154
             AI     +         +++     + LL N  ++   I +
Sbjct: 50  KAAIT-TDEYNMEDVKEYNKEDFSIQPDSLL-NFIKFRRTIRQ 90


>gi|225572308|ref|ZP_03781172.1| hypothetical protein RUMHYD_00602 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040190|gb|EEG50436.1| hypothetical protein RUMHYD_00602 [Blautia hydrogenotrophica DSM
           10507]
          Length = 944

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 27/94 (28%), Gaps = 9/94 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P+E        R       Y    ++CI C  C   C                    V 
Sbjct: 135 VPYEHREKDTSNR------FYYQEMDKCIRCGKCVRTCRELVGINALAMAQRGAVAYVVP 188

Query: 96  Y---DIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
                +    C+ CG C   CPV A++     EF
Sbjct: 189 NGGDTMAETACVSCGNCVSVCPVGALMPKSLHEF 222


>gi|168180834|ref|ZP_02615498.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum NCTC
           2916]
 gi|182668364|gb|EDT80343.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum NCTC
           2916]
          Length = 1192

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 24/88 (27%), Gaps = 16/88 (18%)

Query: 51  HALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY 96
            A+       ++CI C  C  +CP                A                   
Sbjct: 677 IAINVPEWQLDKCIQCNQCSYVCPHAVIRPILLTDEEVKNAPEGFKSKPAVGAKGLNFTM 736

Query: 97  DIDMIKCIYCGLCQEACP--VDAIVEGP 122
            I    C  CG C + CP    A++  P
Sbjct: 737 AISPYDCTGCGNCADVCPAKEKALIMKP 764


>gi|89074883|ref|ZP_01161333.1| hypothetical iron-sulfur cluster-binding protein [Photobacterium
           sp. SKA34]
 gi|89049280|gb|EAR54843.1| hypothetical iron-sulfur cluster-binding protein [Photobacterium
           sp. SKA34]
          Length = 551

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 9/76 (11%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
                C  C  C A+CP +A+                        C+ CG+C++ACP   
Sbjct: 414 CDTTDCTLCMSCVAVCPTRALHAIGNRPGLL---------FIEEDCVQCGMCEKACPEKV 464

Query: 118 IVEGPNFEFATETRQE 133
           I   P F +    R+E
Sbjct: 465 ISLEPRFNWDWHARKE 480



 Score = 35.1 bits (79), Expect = 3.2,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI--KCIYCGL 108
           E C+ C +CE  CP + I++E         R+  R   +     CI CG 
Sbjct: 448 EDCVQCGMCEKACPEKVISLEPRFNWDWHARKEARLVHEESAACCISCGN 497



 Score = 35.1 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 36/100 (36%), Gaps = 19/100 (19%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE----- 120
           C  C   CPA A++ +                ID   C   G C  ACP +AI       
Sbjct: 190 CDRCLDACPAGALSSDGVEVA-----------IDPYLCQGVGSCATACPTEAITYALPDP 238

Query: 121 --GPNFEFATETR-QELYYDKERLLNNGDRWESEIVRNIV 157
               NF     TR ++   +K  LL  G+R E  +   + 
Sbjct: 239 QNTQNFVHRVLTRYKQEGGEKPTLLLYGNRDEKAVTAALA 278


>gi|302339228|ref|YP_003804434.1| dihydroorotate dehydrogenase [Spirochaeta smaragdinae DSM 11293]
 gi|301636413|gb|ADK81840.1| dihydroorotate dehydrogenase family protein [Spirochaeta
           smaragdinae DSM 11293]
          Length = 362

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 11/63 (17%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           +    + C  C  C  +CP +A ++                ++D   C YCGLC  ACP 
Sbjct: 304 FSYNPDICTECGRCVTVCPYEARSMVGRQ-----------MNLDRSMCRYCGLCVTACPT 352

Query: 116 DAI 118
            A+
Sbjct: 353 GAL 355



 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 7/25 (28%), Positives = 10/25 (40%)

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVE 120
           +  +   C  CG C   CP +A   
Sbjct: 304 FSYNPDICTECGRCVTVCPYEARSM 328


>gi|281358583|ref|ZP_06245062.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Victivallis
           vadensis ATCC BAA-548]
 gi|281314931|gb|EFA98965.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Victivallis
           vadensis ATCC BAA-548]
          Length = 369

 Score = 48.9 bits (115), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 23/64 (35%), Gaps = 11/64 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI  + C  IC   A T   G             +ID  KC+ CG C   CP DAI
Sbjct: 194 DRTLCIGSRACARICAHGAPTFSEGKA-----------EIDHAKCVGCGRCIGVCPKDAI 242

Query: 119 VEGP 122
               
Sbjct: 243 QPSW 246


>gi|329960108|ref|ZP_08298572.1| pyruvate synthase [Bacteroides fluxus YIT 12057]
 gi|328533060|gb|EGF59833.1| pyruvate synthase [Bacteroides fluxus YIT 12057]
          Length = 1185

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 32/90 (35%), Gaps = 15/90 (16%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGP 84
           E+G+     RG  A     N  E CI C  C  +CP                A   +   
Sbjct: 667 EQGTAKYEKRGVAAFVPEWN-AENCIQCNKCAYVCPHASIRPFVLDAEEQKGAGFTQLKA 725

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                   T R  ++++ C+ CG C + CP
Sbjct: 726 VGKAFDGMTFRMQVNVLDCLGCGNCADICP 755


>gi|284033073|ref|YP_003383004.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Kribbella flavida DSM 17836]
 gi|283812366|gb|ADB34205.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Kribbella
           flavida DSM 17836]
          Length = 499

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
            C A   C + CP   I    G     G   T    ID   CI CG C E CPVDA
Sbjct: 8   DCCADARCVSACPMNCIHPSPGE---PGFGTTDGLFIDPRTCIDCGACAEVCPVDA 60


>gi|262037146|ref|ZP_06010638.1| electron transport complex protein RnfC [Leptotrichia goodfellowii
           F0264]
 gi|261748834|gb|EEY36181.1| electron transport complex protein RnfC [Leptotrichia goodfellowii
           F0264]
          Length = 441

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                    CI+C  C   CP   + ++       G +      +++  CI CG C+ +C
Sbjct: 356 NIDNIERNNCISCGYCVDACPMGLMPMKFEEMYRKG-KYKKLVKLNLDMCIECGACEYSC 414

Query: 114 P 114
           P
Sbjct: 415 P 415



 Score = 34.7 bits (78), Expect = 4.4,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
           +I+   CI CG C +ACP+  +       +
Sbjct: 359 NIERNNCISCGYCVDACPMGLMPMKFEEMY 388


>gi|146297247|ref|YP_001181018.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410823|gb|ABP67827.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 339

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 6/82 (7%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E+CI C LCE  CP             +G  +      D   C  C  C + CP  A+VE
Sbjct: 252 EKCIHCGLCETTCPD--YVFVWDRFLENGKPKMFNLGPDYQYCKGCLRCVDVCPSGALVE 309

Query: 121 G----PNFEFATETRQELYYDK 138
           G     + E  +       Y+K
Sbjct: 310 GIEREHDIEKISAKHDFDVYEK 331



 Score = 34.7 bits (78), Expect = 4.8,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 10/59 (16%)

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWE 149
           R          KCI+CGLC+  CP    V     E            K ++ N G  ++
Sbjct: 242 RVGKIPIFIKEKCIHCGLCETTCPDYVFVWDRFLEN----------GKPKMFNLGPDYQ 290


>gi|300856191|ref|YP_003781175.1| fumarate reductase/succinate dehydrogenase flavoprotein-like
           protein [Clostridium ljungdahlii DSM 13528]
 gi|300436306|gb|ADK16073.1| fumarate reductase/succinate dehydrogenase flavoprotein-like
           protein [Clostridium ljungdahlii DSM 13528]
          Length = 926

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 10/67 (14%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           A         +C  C  C  +CP   I            ++     ID   C  CG+C +
Sbjct: 317 AFTNIYVDPRKCKGCGKCLEVCPEDCIEA----------KKGYISMIDEFDCTKCGICID 366

Query: 112 ACPVDAI 118
            CP +AI
Sbjct: 367 ECPNNAI 373



 Score = 38.5 bits (88), Expect = 0.32,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 15/47 (31%)

Query: 78  ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
             I+                +D  KC  CG C E CP D I     +
Sbjct: 303 QHIKKRGCPAGQCLAFTNIYVDPRKCKGCGKCLEVCPEDCIEAKKGY 349


>gi|302875114|ref|YP_003843747.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
 gi|307690260|ref|ZP_07632706.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
 gi|302577971|gb|ADL51983.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
          Length = 630

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 10/65 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               + CI C  C   CP + I+           +   ++ ID  KCI CG C E CPV 
Sbjct: 576 YEITDECIGCTKCSRACPVRCISG----------KIKGKHIIDQEKCIKCGTCFEGCPVK 625

Query: 117 AIVEG 121
           AI  G
Sbjct: 626 AIKLG 630



 Score = 38.2 bits (87), Expect = 0.44,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                    ++         ++ VRY+I   +CI C  C  ACPV  I
Sbjct: 551 YFMDEYNAHVDEKKCVAGKCKKLVRYEI-TDECIGCTKCSRACPVRCI 597


>gi|220904771|ref|YP_002480083.1| hydrogenase, Fe-only [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219869070|gb|ACL49405.1| hydrogenase, Fe-only [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 418

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 31/84 (36%), Gaps = 10/84 (11%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
           +E         G+  L    +  ++CI C LC+  CP  A+  E+G              
Sbjct: 11  YEPHVPPRGADGDKMLFVQIDD-KKCIGCDLCQEYCPTGAVYGETGLAHTVAY------- 62

Query: 98  IDMIKCIYCGLCQEACPVDAIVEG 121
                CI CG C   CP  AI E 
Sbjct: 63  --PEPCINCGQCLTHCPEMAIYET 84


>gi|153807874|ref|ZP_01960542.1| hypothetical protein BACCAC_02160 [Bacteroides caccae ATCC 43185]
 gi|149129483|gb|EDM20697.1| hypothetical protein BACCAC_02160 [Bacteroides caccae ATCC 43185]
          Length = 635

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 10/66 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L  Y    E CI C LC   CPA AI+                + I+  KCI CG+C   
Sbjct: 577 LLTYTINPEHCIGCHLCAKNCPADAISGL----------VRKPHVINPDKCIKCGMCMAR 626

Query: 113 CPVDAI 118
           C   AI
Sbjct: 627 CKFKAI 632



 Score = 38.2 bits (87), Expect = 0.35,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 8/62 (12%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
            +          +  + Y I+   CI C LC + CP DAI        +   R+    + 
Sbjct: 563 HVRDKTCRAKQCKSLLTYTINPEHCIGCHLCAKNCPADAI--------SGLVRKPHVINP 614

Query: 139 ER 140
           ++
Sbjct: 615 DK 616


>gi|291544150|emb|CBL17259.1| Iron only hydrogenase large subunit, C-terminal domain
           [Ruminococcus sp. 18P13]
          Length = 475

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110
              + +C  C  C  +CP  AI     P  +    + +  +      ID  KCI CG C 
Sbjct: 123 HIDKSKCKNCGACAKVCPYTAINCRRRPCENACKIKALHMNENKAAAIDNDKCISCGACV 182

Query: 111 EACPVDAI 118
             CP  AI
Sbjct: 183 YQCPFGAI 190



 Score = 40.9 bits (94), Expect = 0.062,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 22/66 (33%), Gaps = 12/66 (18%)

Query: 57  PNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 C  C    CE +C   AIT +                ID  KC  CG C + CP
Sbjct: 91  YEVTNACRGCLAHRCEDVCRFGAITFD----------YQHVAHIDKSKCKNCGACAKVCP 140

Query: 115 VDAIVE 120
             AI  
Sbjct: 141 YTAINC 146


>gi|291167110|gb|EFE29156.1| iron-sulfur cluster-binding protein [Filifactor alocis ATCC 35896]
          Length = 307

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 26/73 (35%), Gaps = 15/73 (20%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L  Y   + +CI+C  C  IC       ++                    CI CG C +A
Sbjct: 233 LLSYNVDQNKCISCGKCSRICKMDVDITKNNAHTE---------------CIRCGECIKA 277

Query: 113 CPVDAIVEGPNFE 125
           CP  AI     FE
Sbjct: 278 CPTQAISTHWGFE 290


>gi|317153661|ref|YP_004121709.1| ferredoxin-dependent glutamate synthase [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316943912|gb|ADU62963.1| ferredoxin-dependent glutamate synthase [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 544

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 32/101 (31%), Gaps = 16/101 (15%)

Query: 41  GSTSPRFRGEHALRR-YPNGEERCIACKLCEAICPAQAIT--------------IESGPR 85
              +P   G   L          C  C  C A+CP  AI               +++ P 
Sbjct: 5   RPVTPATLGVKDLPWQIKWDIATCTKCGRCTAVCPVNAIELGVFRKREINAPMGLQAKPS 64

Query: 86  CHDGTRRTVRYDIDMIK-CIYCGLCQEACPVDAIVEGPNFE 125
                   +R   D    CI C +C   CP +AI     ++
Sbjct: 65  NTFSVYYGIRQRTDPAYACIGCAMCAMVCPNNAIEPTRQYD 105


>gi|153824794|ref|ZP_01977461.1| iron-sulfur cluster-binding protein [Vibrio cholerae MZO-2]
 gi|149741512|gb|EDM55542.1| iron-sulfur cluster-binding protein [Vibrio cholerae MZO-2]
          Length = 553

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 9/75 (12%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             C  C  C A+CP +A+                        C+ CGLC +ACP  A+  
Sbjct: 418 SDCTLCMSCVAVCPTRALHPAGDSPA---------LRFIEQDCVQCGLCVKACPEQALSA 468

Query: 121 GPNFEFATETRQELY 135
            P   +    RQ + 
Sbjct: 469 TPQLNWNKAARQGVV 483



 Score = 40.9 bits (94), Expect = 0.056,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 14/81 (17%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           C+ C   CPA A++ E   +         R  I+   C   G C  ACP +AI     + 
Sbjct: 186 CERCVDACPAGALSSEGSDQTGH------RIQINPYLCQGVGTCATACPTEAIH----YA 235

Query: 126 FA-TETRQELYYDKERLLNNG 145
                  Q+     ERLL N 
Sbjct: 236 LPNPTDTQKFI---ERLLANY 253



 Score = 33.9 bits (76), Expect = 7.1,   Method: Composition-based stats.
 Identities = 6/23 (26%), Positives = 8/23 (34%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIV 119
           +     C  C  C   CP  A+ 
Sbjct: 414 ECQTSDCTLCMSCVAVCPTRALH 436


>gi|255315823|ref|ZP_05357406.1| putative nitroreductase [Clostridium difficile QCD-76w55]
 gi|260684650|ref|YP_003215935.1| putative nitroreductase [Clostridium difficile CD196]
 gi|260688308|ref|YP_003219442.1| putative nitroreductase [Clostridium difficile R20291]
 gi|260210813|emb|CBA65837.1| putative nitroreductase [Clostridium difficile CD196]
 gi|260214325|emb|CBE06677.1| putative nitroreductase [Clostridium difficile R20291]
          Length = 260

 Score = 48.9 bits (115), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 31/95 (32%), Gaps = 11/95 (11%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
                       +E CI C LC+  CP   I IE+               I    C+ CG
Sbjct: 1   MNMKYQHIIEVDKELCIGCGLCKNDCPVNNIIIENKKSV-----------IKKQDCLMCG 49

Query: 108 LCQEACPVDAIVEGPNFEFATETRQELYYDKERLL 142
            C   CP  AI      E   E   +   D + LL
Sbjct: 50  HCAAICPTKAITLTGFDEPPIELTNKPKLDSDELL 84


>gi|323968397|gb|EGB63803.1| electron transporter [Escherichia coli M863]
          Length = 740

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQNCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|322807070|emb|CBZ04644.1| pyruvate-flavodoxin oxidoreductase [Clostridium botulinum H04402
           065]
          Length = 1192

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 24/88 (27%), Gaps = 16/88 (18%)

Query: 51  HALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY 96
            A+       ++CI C  C  +CP                A                   
Sbjct: 677 IAINVPEWQLDKCIQCNQCSYVCPHAVIRPVLLTDEEVKNAPEGFKSKPAAGAKGLNFTM 736

Query: 97  DIDMIKCIYCGLCQEACP--VDAIVEGP 122
            I    C  CG C + CP    A+V  P
Sbjct: 737 AISPYDCTGCGNCADVCPAKEKALVMKP 764


>gi|291278907|ref|YP_003495742.1| electron transport complex protein RnfB [Deferribacter
           desulfuricans SSM1]
 gi|290753609|dbj|BAI79986.1| electron transport complex protein RnfB [Deferribacter
           desulfuricans SSM1]
          Length = 260

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 31/80 (38%), Gaps = 11/80 (13%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           EK         +  +         CI C+LC   CP  AIT+E+               I
Sbjct: 189 EKKFIVSCSSKDKGVETKKVCSVGCIGCRLCAKNCPEDAITVENNLAY-----------I 237

Query: 99  DMIKCIYCGLCQEACPVDAI 118
              KCI CG C+E CP  AI
Sbjct: 238 HAEKCINCGKCEEVCPTKAI 257



 Score = 37.8 bits (86), Expect = 0.55,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 5/73 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQEAC 113
            EE+C AC LC   CP   I +    +          +      +  + CI C LC + C
Sbjct: 164 DEEKCTACGLCVKACPRNLIELIDVEKKFIVSCSSKDKGVETKKVCSVGCIGCRLCAKNC 223

Query: 114 PVDAIVEGPNFEF 126
           P DAI    N  +
Sbjct: 224 PEDAITVENNLAY 236



 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 31/91 (34%), Gaps = 17/91 (18%)

Query: 39  EKGSTSPRFRGE---HALRRYPNGEERCIA-C---KLCEAICPAQAITIESGPRCHDGTR 91
           EK      + G    HA+     G + CI  C     C   C   A+ +           
Sbjct: 107 EKCPPKYEYYGPADCHAIVMLGGGNKGCIYGCVGGGSCVKACNFDALKMGDNGIPV---- 162

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                 +D  KC  CGLC +ACP + I    
Sbjct: 163 ------VDEEKCTACGLCVKACPRNLIELID 187


>gi|284921553|emb|CBG34625.1| electron transport complex protein [Escherichia coli 042]
          Length = 741

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQNCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|218438247|ref|YP_002376576.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Cyanothece sp. PCC 7424]
 gi|218170975|gb|ACK69708.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Cyanothece sp. PCC 7424]
          Length = 1222

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 34/118 (28%), Gaps = 24/118 (20%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPR 85
             +T+   +   A        + C+ C  C  +CP               +A        
Sbjct: 679 PTATTKWEKRNIAQEIPVWDPDVCVQCGKCVLVCPHAVIRSKVYEEQELAEAPAAFKSTN 738

Query: 86  CHDGTRRTVRYDID--MIKCIYCGLCQEACPV--------DAIVEGPNFEFATETRQE 133
             D   + +++ I      C  CG+C + CP          AI          + R+ 
Sbjct: 739 AKDHDWKGLKFTIQVAAEDCTGCGICVDVCPAKNKSQPKLKAINMEAQLPLREQEREN 796


>gi|170682353|ref|YP_001743625.1| electron transport complex protein RnfC [Escherichia coli SMS-3-5]
 gi|226735444|sp|B1LEQ7|RNFC_ECOSM RecName: Full=Electron transport complex protein rnfC
 gi|170520071|gb|ACB18249.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli SMS-3-5]
          Length = 676

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQNCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|89892861|ref|YP_516348.1| pyruvate ferredoxin oxidoreductase [Desulfitobacterium hafniense
           Y51]
 gi|219666124|ref|YP_002456559.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|89332309|dbj|BAE81904.1| pyruvate ferredoxin oxidoreductase [Desulfitobacterium hafniense
           Y51]
 gi|219536384|gb|ACL18123.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 1176

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 28/83 (33%), Gaps = 17/83 (20%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRRTV-------- 94
           RG   +    +  E+CI C  C  +CP  AI       E      +G             
Sbjct: 677 RGIAVIVPEWD-VEKCIQCNQCSYVCPHAAIRPFLLNEEEVANAPEGFVTKKALGKEADG 735

Query: 95  ---RYDIDMIKCIYCGLCQEACP 114
              R  +  + C  CG C E CP
Sbjct: 736 LQLRVQVSPLDCTGCGNCAEVCP 758



 Score = 33.9 bits (76), Expect = 7.1,   Method: Composition-based stats.
 Identities = 9/18 (50%), Positives = 9/18 (50%)

Query: 101 IKCIYCGLCQEACPVDAI 118
            KCI C  C   CP  AI
Sbjct: 689 EKCIQCNQCSYVCPHAAI 706


>gi|330973101|gb|EGH73167.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas
           syringae pv. aceris str. M302273PT]
          Length = 291

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 10/75 (13%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           RG    +     E  CI C  C   CP  AI   +           + + + + +C  C 
Sbjct: 76  RGTAPAQVAFIREAECIGCTKCIQACPVDAILGAAK----------LMHTVIIDECTGCD 125

Query: 108 LCQEACPVDAIVEGP 122
           LC   CPVD I   P
Sbjct: 126 LCIAPCPVDCIEMHP 140


>gi|328954778|ref|YP_004372111.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Coriobacterium glomerans PW2]
 gi|328455102|gb|AEB06296.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Coriobacterium glomerans PW2]
          Length = 412

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 5/68 (7%)

Query: 63  CIACKLCEAICPAQAITIESGPR---CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           CI C+ C  +C   AI+             TR+     ID  +C+ CG C  AC  DAIV
Sbjct: 214 CIGCRACARVCAFDAISFTETRERALAGGATRQIQVAGIDQTRCVGCGRCIGACNQDAIV 273

Query: 120 EGPNFEFA 127
             P+++ A
Sbjct: 274 --PDYDQA 279


>gi|315186845|gb|EFU20603.1| hypothetical protein SpithDRAFT_0758 [Spirochaeta thermophila DSM
           6578]
          Length = 371

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 12/58 (20%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           +RC  C  C  +CP   IT++S PR                +CIYC  C E CP +AI
Sbjct: 309 DRCRRCGYCARVCPVSCITMDSLPRWD------------YSRCIYCYCCHENCPHEAI 354



 Score = 40.5 bits (93), Expect = 0.076,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 2/39 (5%)

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVEG--PNFEFA 127
               R  +   +C  CG C   CPV  I     P ++++
Sbjct: 299 WVRSRPRVIADRCRRCGYCARVCPVSCITMDSLPRWDYS 337


>gi|310827348|ref|YP_003959705.1| hypothetical protein ELI_1756 [Eubacterium limosum KIST612]
 gi|308739082|gb|ADO36742.1| hypothetical protein ELI_1756 [Eubacterium limosum KIST612]
          Length = 247

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 31/87 (35%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E  +   ++      R  P   E+CI C LC   C A      S        +    Y+ 
Sbjct: 100 EIQAMCDKYGAFETSRLKPVDGEKCILCGLCTKACDALGTGAISTINRGVTKKVATPYEN 159

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFE 125
             + CI C  C + CP  AI    + E
Sbjct: 160 PSVDCIGCTSCAQVCPTGAIEWSEDGE 186


>gi|302344257|ref|YP_003808786.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075]
 gi|301640870|gb|ADK86192.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075]
          Length = 638

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 10/73 (13%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             L +Y    E C  C  C   CP QAI+ E              + ID  KCI C +C 
Sbjct: 569 KELFQYEIDPEACTGCHACWRKCPQQAISGEKKKP----------HVIDQAKCIKCSICY 618

Query: 111 EACPVDAIVEGPN 123
           +AC  +A+V  PN
Sbjct: 619 DACKFNAVVVKPN 631



 Score = 33.9 bits (76), Expect = 6.6,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 8/62 (12%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
            I          +   +Y+ID   C  C  C   CP  AI        + E ++    D+
Sbjct: 557 HIRDKFCPAGVCKELFQYEIDPEACTGCHACWRKCPQQAI--------SGEKKKPHVIDQ 608

Query: 139 ER 140
            +
Sbjct: 609 AK 610


>gi|270261662|ref|ZP_06189935.1| transporter [Serratia odorifera 4Rx13]
 gi|270045146|gb|EFA18237.1| transporter [Serratia odorifera 4Rx13]
          Length = 801

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 3/107 (2%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E+ CI C LC   CPA  +  +       G       + ++  CI CG C   CP  
Sbjct: 371 QEPEQSCIRCGLCVDACPAG-LLPQQLYWFSRGEEHEKARNHNLFDCIECGACAFVCP-S 428

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            I     +       + +  +  R      R+E+++ R +  +   R
Sbjct: 429 NIPLVQYYRQEKAEIKAIDQEAARTAEAKARYEAKLAR-LEREKLAR 474


>gi|90578562|ref|ZP_01234372.1| hypothetical iron-sulfur cluster-binding protein [Vibrio angustum
           S14]
 gi|90439395|gb|EAS64576.1| hypothetical iron-sulfur cluster-binding protein [Vibrio angustum
           S14]
          Length = 551

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 9/76 (11%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
                C  C  C A+CP +A+                        C+ CG+C++ACP   
Sbjct: 414 CDTTDCTLCMSCVAVCPTRALHAIGDRPGLL---------FIEEDCVQCGMCEKACPEKV 464

Query: 118 IVEGPNFEFATETRQE 133
           I   P F +    R+E
Sbjct: 465 ISLEPRFNWDWHARKE 480



 Score = 35.1 bits (79), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR--YDIDMIKCIYCGL 108
           E C+ C +CE  CP + I++E         R+  R  ++     CI CG 
Sbjct: 448 EDCVQCGMCEKACPEKVISLEPRFNWDWHARKEARLVHEEPAACCISCGN 497



 Score = 33.5 bits (75), Expect = 9.8,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 11/53 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C   CPA A++ +                ID   C   G C  ACP +AI
Sbjct: 190 CDRCLDACPACALSSDGAEIA-----------IDPYLCQGVGTCATACPTEAI 231


>gi|84997525|ref|XP_953484.1| RNAse L inhibitor protein [Theileria annulata strain Ankara]
 gi|65304480|emb|CAI76859.1| RNAse L inhibitor protein, putative [Theileria annulata]
          Length = 636

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 1/83 (1%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           K   +    GE+ LR      ++C   K C   C       ++G +C +    +    I 
Sbjct: 6   KAKPNESGMGENKLRIAIVSSDKCKP-KKCRQECKRTCPVTKTGKQCIEVDPTSKIAFIS 64

Query: 100 MIKCIYCGLCQEACPVDAIVEGP 122
              CI CG+C + CP +AI    
Sbjct: 65  EHLCIGCGICVKKCPFEAITIIN 87


>gi|254226570|ref|ZP_04920152.1| iron-sulfur cluster-binding protein [Vibrio cholerae V51]
 gi|125620906|gb|EAZ49258.1| iron-sulfur cluster-binding protein [Vibrio cholerae V51]
          Length = 553

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 9/75 (12%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             C  C  C A+CP +A+                        C+ CGLC +ACP  A+  
Sbjct: 418 SDCTLCMSCVAVCPTRALHPAGDSPA---------LRFIEQDCVQCGLCVKACPEQALSA 468

Query: 121 GPNFEFATETRQELY 135
            P   +    RQ + 
Sbjct: 469 TPQLNWNKAARQGVV 483



 Score = 40.9 bits (94), Expect = 0.058,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 14/81 (17%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           C+ C   CPA A++ E   +         R  I+   C   G C  ACP +AI     + 
Sbjct: 186 CERCVDACPAGALSSEGSDQTGH------RIQINPYLCQGVGTCATACPTEAIH----YA 235

Query: 126 FA-TETRQELYYDKERLLNNG 145
                  Q+     ERLL N 
Sbjct: 236 LPNPTDTQKFI---ERLLANY 253



 Score = 33.9 bits (76), Expect = 7.4,   Method: Composition-based stats.
 Identities = 6/23 (26%), Positives = 8/23 (34%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIV 119
           +     C  C  C   CP  A+ 
Sbjct: 414 ECQASDCTLCMSCVAVCPTRALH 436


>gi|319902900|ref|YP_004162628.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Bacteroides
           helcogenes P 36-108]
 gi|319417931|gb|ADV45042.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Bacteroides
           helcogenes P 36-108]
          Length = 1185

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 28/81 (34%), Gaps = 15/81 (18%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG  A     N  E CI C  C  +CP                A   +           T
Sbjct: 676 RGVAAFVPEWN-AENCIQCNKCAYVCPHASIRPFVLDAEEQKGADFTQLKAVGKAFDGMT 734

Query: 94  VRYDIDMIKCIYCGLCQEACP 114
            R  +D++ C+ CG C + CP
Sbjct: 735 FRIQVDVLDCLGCGNCADVCP 755


>gi|317485394|ref|ZP_07944273.1| ferredoxin oxidoreductase [Bilophila wadsworthia 3_1_6]
 gi|316923353|gb|EFV44560.1| ferredoxin oxidoreductase [Bilophila wadsworthia 3_1_6]
          Length = 1198

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 32/116 (27%), Gaps = 20/116 (17%)

Query: 29  KAKTTINYPF--EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC 86
           K   +   P       T+   +   A+       E CI C  C  +CP  AI        
Sbjct: 662 KLPVSAFEPDGLVPLGTTAYEKRGVAVNIPEWISENCIQCCQCSFVCPHAAIRPVLATEE 721

Query: 87  HDGTRRTV----------------RYDIDMIKCIYCGLCQEACP--VDAIVEGPNF 124
                                   R  +    C+ CG C E CP    A+V  P  
Sbjct: 722 ELSCAPDTFVTKDAIGKELKGLKFRIQVYAEDCLGCGSCAEVCPAKTKALVMKPLH 777


>gi|301059375|ref|ZP_07200302.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300446604|gb|EFK10442.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 415

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 19/101 (18%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICP---AQAITIESGPRCHDGTRRTV----RYDI 98
            FR            ++CIAC  C   CP     A     G R     +       +Y I
Sbjct: 92  DFRVHVTRHPRYVDVDKCIACGACAEKCPKKVPNAYDGGLGKRKAIYVKYPQAVPLKYAI 151

Query: 99  DMIKCIY-----CGLCQEACPVDAIVEGPNFEFATETRQEL 134
           D   CI      CG+C++ CP DAI    N+E   + R+EL
Sbjct: 152 DDRFCIKLTKGKCGICEKICPADAI----NYE---DKREEL 185


>gi|255524401|ref|ZP_05391358.1| dihydroorotate dehydrogenase family protein [Clostridium
           carboxidivorans P7]
 gi|296187521|ref|ZP_06855916.1| dihydropyrimidine dehydrogenase [Clostridium carboxidivorans P7]
 gi|255511958|gb|EET88241.1| dihydroorotate dehydrogenase family protein [Clostridium
           carboxidivorans P7]
 gi|296048043|gb|EFG87482.1| dihydropyrimidine dehydrogenase [Clostridium carboxidivorans P7]
          Length = 412

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/84 (17%), Positives = 25/84 (29%), Gaps = 6/84 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +       ++CI C  C   C   A       +         +  I+   
Sbjct: 324 VPAENLDRDYIVYPKYDTDKCIGCGRCYISCYDGAH------QAVVWDEENRKPSINKDN 377

Query: 103 CIYCGLCQEACPVDAIVEGPNFEF 126
           C+ C LC   CP++  +     EF
Sbjct: 378 CVGCHLCALVCPIEGCITKGEIEF 401


>gi|251780214|ref|ZP_04823134.1| nitroreductase [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243084529|gb|EES50419.1| nitroreductase [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 258

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 12/103 (11%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++ CI C LC+  CP   ITI                +I    CI C  C+  CP  AI
Sbjct: 10  NKDLCIGCGLCKNDCPVNNITIIDKKS-----------NIKNQNCIKCCHCEAICPTKAI 58

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161
                 E   E  ++   D   LL    +    I +    + P
Sbjct: 59  TITGFNELPIELAKQPILDSNELL-MAIKSRRTIRKFKNKEVP 100



 Score = 34.3 bits (77), Expect = 5.4,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            +     +++   CI CGLC+  CPV+ I    
Sbjct: 1   MKEQHVIEVNKDLCIGCGLCKNDCPVNNITIID 33


>gi|237796195|ref|YP_002863747.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum Ba4 str.
           657]
 gi|229260863|gb|ACQ51896.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum Ba4 str.
           657]
          Length = 1192

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 24/88 (27%), Gaps = 16/88 (18%)

Query: 51  HALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY 96
            A+       ++CI C  C  +CP                A                   
Sbjct: 677 IAINVPEWQLDKCIQCNQCSYVCPHAVIRPVLLSDEEVKNAPEGFESKPAAGAKGLNFTM 736

Query: 97  DIDMIKCIYCGLCQEACP--VDAIVEGP 122
            I    C  CG C + CP    A+V  P
Sbjct: 737 AISPYDCTGCGNCADVCPAKEKALVMKP 764


>gi|228474762|ref|ZP_04059493.1| formate dehydrogenase, alpha subunit [Staphylococcus hominis SK119]
 gi|228271425|gb|EEK12793.1| formate dehydrogenase, alpha subunit [Staphylococcus hominis SK119]
          Length = 983

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 13/96 (13%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P+EK               Y    ++CI C  C   C    +             R +  
Sbjct: 131 PYEKDYGP----------FYRYDPDQCILCGRCVEACQDVEVNETLSIDWDREHPRVIWD 180

Query: 97  D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           +   I+   C+ CG C   CP +A++E      A  
Sbjct: 181 NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGY 216



 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 17/68 (25%), Gaps = 8/68 (11%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105
           R        C  C      CE      A                      Y  D  +CI 
Sbjct: 90  RILEKHMLYCTVCDYNNGDCEIHNAMDAWGLQEQSYEYKTKPYEKDYGPFYRYDPDQCIL 149

Query: 106 CGLCQEAC 113
           CG C EAC
Sbjct: 150 CGRCVEAC 157


>gi|210623066|ref|ZP_03293553.1| hypothetical protein CLOHIR_01503 [Clostridium hiranonis DSM 13275]
 gi|210153869|gb|EEA84875.1| hypothetical protein CLOHIR_01503 [Clostridium hiranonis DSM 13275]
          Length = 306

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 38/103 (36%), Gaps = 13/103 (12%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
            T P+    + L +    +++CI C  C   C   +I  ++G            + +   
Sbjct: 48  KTEPKKEAYYGLPKAVIDQDKCIQCGKCMENCRFDSIMEKNGE-----------FSVKKF 96

Query: 102 KCIYCGLCQEACPVDAIVEGPNF--EFATETRQELYYDKERLL 142
            C  CG+C+  CP  AI    +   +      ++  +   +L 
Sbjct: 97  GCEGCGVCEYVCPSSAITMQKSAAGDTMIYKDEDRVFSTAKLY 139


>gi|187935352|ref|YP_001886203.1| nitroreductase family protein fused to ferredoxin domain
           [Clostridium botulinum B str. Eklund 17B]
 gi|187723505|gb|ACD24726.1| nitroreductase family protein [Clostridium botulinum B str. Eklund
           17B]
          Length = 273

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 14/102 (13%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            +   +E+CI+CK C   CP   I +                +I    CI CG C   CP
Sbjct: 1   MFKVNKEKCISCKQCINDCPVSDILLIDSKA-----------NIKNEACIKCGHCIAICP 49

Query: 115 VDAIV--EGPNFEFATETRQELYYDKERLLNNGDRWESEIVR 154
            +A+   +    E     + E + + + LL N  ++   + +
Sbjct: 50  TNAVSTADYNMDEVKEYNKDEFFIEADNLL-NFIKFRRSVRK 90


>gi|168183176|ref|ZP_02617840.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum Bf]
 gi|182673633|gb|EDT85594.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum Bf]
          Length = 1192

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 24/88 (27%), Gaps = 16/88 (18%)

Query: 51  HALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY 96
            A+       ++CI C  C  +CP                A                   
Sbjct: 677 IAINVPEWQLDKCIQCNQCSYVCPHAVIRPVLLSDEEVKNAPEGFESKPAAGAKGLNFTM 736

Query: 97  DIDMIKCIYCGLCQEACP--VDAIVEGP 122
            I    C  CG C + CP    A+V  P
Sbjct: 737 AISPYDCTGCGNCADVCPAKEKALVMKP 764


>gi|169824852|ref|YP_001692463.1| NADP-reducing hydrogenase [Finegoldia magna ATCC 29328]
 gi|167831657|dbj|BAG08573.1| NADP-reducing hydrogenase [Finegoldia magna ATCC 29328]
          Length = 626

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 16/96 (16%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            L+Y F+ +   +   +K           AL  Y    ++CI C  C   CP   I    
Sbjct: 544 TLKY-FRNEYEAHIYDKKCPAHAC----KALLSYEI-TDKCIGCTKCAKNCPVSCIEGAV 597

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +          + ID  +CI CG C+  CPV A+
Sbjct: 598 KKQ----------HVIDKSQCIKCGNCETVCPVHAV 623


>gi|126700933|ref|YP_001089830.1| hydrogenase [Clostridium difficile 630]
 gi|115252370|emb|CAJ70211.1| Iron hydrogenase [Clostridium difficile]
          Length = 461

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 10/83 (12%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
                    ++ C  C+ C  +CP  AI  E G              I++ +C+ CG C 
Sbjct: 1   MTFMIINIDKDLCTGCRECSKVCPVNAIEGEEGKPQE----------INLDRCVMCGQCV 50

Query: 111 EACPVDAIVEGPNFEFATETRQE 133
           + C   A V    FEF  E +QE
Sbjct: 51  QTCKSYASVIDEGFEFLQEKKQE 73


>gi|330864200|emb|CBX74261.1| electron transport complex protein rnfC [Yersinia enterocolitica
           W22703]
          Length = 412

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 3/103 (2%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C LC   CPA  +  +       G       + ++  CI CG C   CP   I  
Sbjct: 214 QSCIRCGLCVDACPAG-LLPQQLYWFSRGEEHEKARNHNIFDCIECGACAYVCP-SNIPL 271

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
              +       + L  + ER      R+E++  R +  +   R
Sbjct: 272 VQYYRQEKAEIRTLDQEAERAAQAKARFEAKQAR-LEREKIAR 313


>gi|298529028|ref|ZP_07016431.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510464|gb|EFI34367.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 670

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 7/67 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E+C  C +C  +CP  AIT++             R +IDM  C  CG+C  ACP  AI
Sbjct: 599 HTEKCSGCGICVPLCPYDAITMKMVDDHP-------RAEIDMTACKGCGVCTTACPSAAI 651

Query: 119 VEGPNFE 125
           V     E
Sbjct: 652 VLHGYEE 658



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVE 120
           ++   KC  CG+C   CP DAI  
Sbjct: 597 EVHTEKCSGCGICVPLCPYDAITM 620


>gi|254475789|ref|ZP_05089175.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ruegeria sp. R11]
 gi|214030032|gb|EEB70867.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ruegeria sp. R11]
          Length = 649

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 34/119 (28%), Gaps = 14/119 (11%)

Query: 23  CLRYFFKAKTTINYPFE-KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
             R   +       P                L       ++C  C  C ++CP+ A+   
Sbjct: 464 TRRQITRQAAKALMPDADMLPLPEGAPYGAVLVA----SDKCTLCLSCVSLCPSGALGDN 519

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140
                        +       C+ CGLC   CP +AI   P     +    ++   +E 
Sbjct: 520 PD---------LPQLRFQEDACLQCGLCANVCPENAISYEPRLNLTSAALSQVVLHEEE 569



 Score = 38.9 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 11/55 (20%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             C  C  +CP  AI+ +                ID + C  CG C   CP  AI
Sbjct: 276 TGCTRCLDVCPTGAISPDGD-----------HVSIDPMICAGCGSCASLCPSGAI 319


>gi|218248649|ref|YP_002374020.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing
           protein [Cyanothece sp. PCC 8801]
 gi|218169127|gb|ACK67864.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Cyanothece sp. PCC 8801]
          Length = 1212

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 27/105 (25%), Gaps = 26/105 (24%)

Query: 58  NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTV----RYDID 99
              + CI C  C  +CP                A          D   +         + 
Sbjct: 688 WDPDVCIQCGKCVLVCPHAVIRSKVYEETALVNAPETFKTASAKDLDWKKTALKFTIQVA 747

Query: 100 MIKCIYCGLCQEACPV--------DAIVEGPNFEFATETRQELYY 136
              C  CG+C + CP          AI   P      + R+   Y
Sbjct: 748 AEDCTGCGVCVDVCPAKNKSQPKLKAINMAPQLPIRDQERENWDY 792


>gi|197122025|ref|YP_002133976.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
 gi|196171874|gb|ACG72847.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
          Length = 438

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 10/86 (11%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           +  ERC+ C  C   CP  AI     P      R+  R  +D  +C+ CG+C   C   A
Sbjct: 290 SDRERCLGCGKCSKRCPVGAIPRVPDPDPRF--RKHGRPQVDEARCLGCGVCTLTCNPGA 347

Query: 118 IVEGPNFEFATETRQELYYDKERLLN 143
           +            R +     E L  
Sbjct: 348 MKLHH--------RTQRVLHPEDLFE 365


>gi|126700741|ref|YP_001089638.1| putative nitroreductase [Clostridium difficile 630]
 gi|115252178|emb|CAJ70016.1| putative nitroreductase [Clostridium difficile]
          Length = 260

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 31/95 (32%), Gaps = 11/95 (11%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
                       +E CI C LC+  CP   I IE+               I    C+ CG
Sbjct: 1   MNMKYQHIIEVDKELCIGCGLCKNDCPVNNIIIENKKSV-----------IKKQDCLMCG 49

Query: 108 LCQEACPVDAIVEGPNFEFATETRQELYYDKERLL 142
            C   CP  AI      E   E   +   D + LL
Sbjct: 50  HCAAICPTKAITLTGFDEPPIELTNKPKLDSDELL 84


>gi|256003667|ref|ZP_05428656.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Clostridium
           thermocellum DSM 2360]
 gi|281416610|ref|ZP_06247630.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Clostridium
           thermocellum JW20]
 gi|255992458|gb|EEU02551.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Clostridium
           thermocellum DSM 2360]
 gi|281408012|gb|EFB38270.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Clostridium
           thermocellum JW20]
 gi|316939719|gb|ADU73753.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Clostridium
           thermocellum DSM 1313]
          Length = 1175

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 38/134 (28%), Gaps = 41/134 (30%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA----------------ITIE 81
           +EK   +P               ++CI C  C  +CP                       
Sbjct: 672 YEKRGIAPMIPEWQI--------DKCIQCGQCSFVCPHSTIRLFLLNDEELSRAPETFTT 723

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV--DAIVEGP----------NFEFATE 129
                        R  +  + C  CG C + CP    A++  P          N+EFA  
Sbjct: 724 KKAIGKGFENLHFRVQVSPLDCTGCGNCADVCPTKEKALIMKPAEEQIEKQADNWEFAMT 783

Query: 130 TRQELYYDKERLLN 143
                   K+ LL+
Sbjct: 784 -----VTQKDNLLD 792


>gi|113971582|ref|YP_735375.1| hydrogenases, Fe-only [Shewanella sp. MR-4]
 gi|113886266|gb|ABI40318.1| hydrogenases, Fe-only [Shewanella sp. MR-4]
          Length = 410

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              +C  C  C+  CP  AI   SG            + ID  KC+ CG C   CP  AI
Sbjct: 18  NASKCKGCDACKQFCPTHAINGASG----------AVHSIDEDKCLSCGQCLINCPFSAI 67

Query: 119 VEGP 122
            E  
Sbjct: 68  EETH 71



 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 98  IDMIKCIYCGLCQEACPVDAIV 119
           I+  KC  C  C++ CP  AI 
Sbjct: 17  INASKCKGCDACKQFCPTHAIN 38


>gi|120553868|ref|YP_958219.1| electron transport complex, RnfABCDGE type, C subunit [Marinobacter
           aquaeolei VT8]
 gi|120323717|gb|ABM18032.1| electron transport complex, RnfABCDGE type, C subunit [Marinobacter
           aquaeolei VT8]
          Length = 609

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 12/99 (12%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C   CP + +  +       G      + +++  CI CG C   CP  +I  
Sbjct: 367 QPCIRCGQCAEACPMELLPQQLFWYSKAGEFEKAEH-LNLFDCIECGACSYVCP-SSIPL 424

Query: 121 GPNFEFAT----ETR-QELYYDKERLLNNGDRWESEIVR 154
              + FA       R ++L  D+ R     +R+E+   R
Sbjct: 425 VQYYRFAKGEIRTQRAEQLKADRAR-----ERFEARQAR 458


>gi|330828886|ref|YP_004391838.1| NAD-dependent formate dehydrogenase subunit alpha [Aeromonas
           veronii B565]
 gi|328804022|gb|AEB49221.1| NAD-dependent formate dehydrogenase alpha subunit [Aeromonas
           veronii B565]
          Length = 1396

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 22/66 (33%), Gaps = 6/66 (9%)

Query: 59  GEERCIACKLCEAICPAQA------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
              RCI C  C   C  QA          S     +  +      +    C+ CG C + 
Sbjct: 615 DANRCIGCGQCVQTCGEQAVQGVLRFAKNSDGTLSNRPQFDTGLSMGDSHCVQCGACVQV 674

Query: 113 CPVDAI 118
           CP  A+
Sbjct: 675 CPTGAL 680



 Score = 35.1 bits (79), Expect = 3.5,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 17/50 (34%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G+  C+ C  C  +CP  A+              T    I     + CG+
Sbjct: 661 GDSHCVQCGACVQVCPTGALVDARDKSQGRTELLTPVNTICTYCGVGCGV 710


>gi|317492086|ref|ZP_07950517.1| electron transport complex [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919969|gb|EFV41297.1| electron transport complex [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 712

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 28/95 (29%), Gaps = 9/95 (9%)

Query: 20  FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79
               L +        + P  K S       ++        E+ CI C  C   CPA  + 
Sbjct: 343 MGFTLAHL-------SVPIVKISNCILAPSKNEFDE-AEEEQACIRCSQCADACPAG-LL 393

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            +       G          +  CI CG C   CP
Sbjct: 394 PQQLYWFSRGKEHEKARQHHLFDCIECGACAYVCP 428


>gi|313812033|gb|EFS49747.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL083PA1]
          Length = 102

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 8/85 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIES--------GPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             + C +C +C   CPA  ITI++          R          + ID   C+YCG+C 
Sbjct: 9   DVDACTSCMICARECPAWCITIDAHHEAVPDCDARRPRTVAVLDEFAIDWGLCMYCGMCI 68

Query: 111 EACPVDAIVEGPNFEFATETRQELY 135
           E+CP DA+         + +R +L 
Sbjct: 69  ESCPFDALSWSDKRVSGSLSRTDLV 93


>gi|314935784|ref|ZP_07843136.1| formate dehydrogenase, alpha subunit [Staphylococcus hominis subsp.
           hominis C80]
 gi|313656349|gb|EFS20089.1| formate dehydrogenase, alpha subunit [Staphylococcus hominis subsp.
           hominis C80]
          Length = 983

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 13/96 (13%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P+EK               Y    ++CI C  C   C    +             R +  
Sbjct: 131 PYEKDYGP----------FYRYDPDQCILCGRCVEACQDVEVNETLSIDWDREHPRVIWD 180

Query: 97  D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           +   I+   C+ CG C   CP +A++E      A  
Sbjct: 181 NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGY 216



 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 17/68 (25%), Gaps = 8/68 (11%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105
           R        C  C      CE      A                      Y  D  +CI 
Sbjct: 90  RILEKHMLYCTVCDYNNGDCEIHNAMDAWGLQEQSYEYKTKPYEKDYGPFYRYDPDQCIL 149

Query: 106 CGLCQEAC 113
           CG C EAC
Sbjct: 150 CGRCVEAC 157


>gi|309776013|ref|ZP_07671005.1| putative 4Fe-4S binding domain protein [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308916295|gb|EFP62043.1| putative 4Fe-4S binding domain protein [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 202

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 32/83 (38%), Gaps = 14/83 (16%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P E+   S   R    L++     + C+ C  C   CP Q I                 
Sbjct: 130 QPIERFYFSIGKRQP--LKKGFQILDACVQCGSCLRSCPQQCIET------------GQP 175

Query: 96  YDIDMIKCIYCGLCQEACPVDAI 118
           Y I    C++CGLC E CPV AI
Sbjct: 176 YIIVQKNCLHCGLCAEVCPVHAI 198


>gi|300870564|ref|YP_003785435.1| pyruvate oxireductase [Brachyspira pilosicoli 95/1000]
 gi|300688263|gb|ADK30934.1| pyruvate oxireductase [Brachyspira pilosicoli 95/1000]
          Length = 322

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-IDMIKCIYCGLCQEACPV 115
               CI C  CE +CP   I  E GP   D  +  +    ID   C  C  C  ACP 
Sbjct: 231 NPANCIDCANCEVVCPDLCIVWEKGPDRKDPNKTAMNMMGIDYQYCKGCLKCVRACPK 288


>gi|295111871|emb|CBL28621.1| Uncharacterized conserved protein [Synergistetes bacterium SGP1]
          Length = 203

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 12/66 (18%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L++  +  E CI C  C+A+CP  AI+                + ID   C+ CG C E 
Sbjct: 147 LKKGYHIMENCIGCGTCQAVCPQDAISS------------GTPFAIDESHCLQCGNCAEN 194

Query: 113 CPVDAI 118
           CPV AI
Sbjct: 195 CPVKAI 200



 Score = 37.0 bits (84), Expect = 0.97,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 14/27 (51%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNF 124
             M  CI CG CQ  CP DAI  G  F
Sbjct: 152 HIMENCIGCGTCQAVCPQDAISSGTPF 178


>gi|253577815|ref|ZP_04855087.1| NADH dehydrogenase I subunit F [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850133|gb|EES78091.1| NADH dehydrogenase I subunit F [Ruminococcus sp. 5_1_39BFAA]
          Length = 623

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 10/68 (14%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           ALR++    E CI C  C   CPA AI+           +    Y ID   CI CG C++
Sbjct: 563 ALRQFHINPEFCIGCGKCAKNCPAGAIS----------GKIKHPYHIDNDICIKCGACKD 612

Query: 112 ACPVDAIV 119
            C  DA+ 
Sbjct: 613 NCNFDAVY 620



 Score = 38.9 bits (89), Expect = 0.21,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 15/40 (37%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            I              ++ I+   CI CG C + CP  AI
Sbjct: 550 HIRDKKCRAKVCTALRQFHINPEFCIGCGKCAKNCPAGAI 589


>gi|226330217|ref|ZP_03805735.1| hypothetical protein PROPEN_04130 [Proteus penneri ATCC 35198]
 gi|225201012|gb|EEG83366.1| hypothetical protein PROPEN_04130 [Proteus penneri ATCC 35198]
          Length = 530

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            N EE CI C  C   CP+  +  +       G         ++  CI CG C   CP
Sbjct: 99  DNLEEACIRCGHCVDACPSG-LLPQQLYWFSKGKEHEKAQQHNLFDCIECGACAFVCP 155


>gi|73748666|ref|YP_307905.1| hydrogenase subunit HymB [Dehalococcoides sp. CBDB1]
 gi|73660382|emb|CAI82989.1| hydrogenase subunit HymB [Dehalococcoides sp. CBDB1]
          Length = 640

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 10/64 (15%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            AL  +    ++C AC +C   CP  AI    G          + + I+  KCI CG C 
Sbjct: 557 KALLTFYIDPDKCKACMICARNCPTDAIKGGKG----------LIHTIEQGKCIKCGACV 606

Query: 111 EACP 114
           + CP
Sbjct: 607 DTCP 610



 Score = 37.4 bits (85), Expect = 0.71,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 20/53 (37%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           +         I++        +  + + ID  KC  C +C   CP DAI  G 
Sbjct: 536 KYFRHEYIDHIKNKHCEAGVCKALLTFYIDPDKCKACMICARNCPTDAIKGGK 588


>gi|150018923|ref|YP_001311177.1| NADH dehydrogenase (quinone) [Clostridium beijerinckii NCIMB 8052]
 gi|149905388|gb|ABR36221.1| NADH dehydrogenase (quinone) [Clostridium beijerinckii NCIMB 8052]
          Length = 626

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/66 (37%), Positives = 28/66 (42%), Gaps = 10/66 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L  Y   +E+C  C  C   CP +AIT E              Y ID  KCI CG C E 
Sbjct: 568 LISYEIDKEKCRGCSKCAKGCPVEAITGEIKKP----------YVIDKSKCIKCGNCIEG 617

Query: 113 CPVDAI 118
           C   AI
Sbjct: 618 CVFKAI 623



 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 18/40 (45%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +          +  + Y+ID  KC  C  C + CPV+AI
Sbjct: 554 HVVDKKCSGGVCKSLISYEIDKEKCRGCSKCAKGCPVEAI 593


>gi|150019727|ref|YP_001311981.1| nitroreductase [Clostridium beijerinckii NCIMB 8052]
 gi|149906192|gb|ABR37025.1| nitroreductase [Clostridium beijerinckii NCIMB 8052]
          Length = 273

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 36/108 (33%), Gaps = 16/108 (14%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                +E+C+ C LC   C    I I                +I  ++C+ CG C   CP
Sbjct: 1   MMIVDKEKCVGCGLCVKDCFPNDIEINGNKA-----------EIKNVRCMKCGHCIAVCP 49

Query: 115 VDAIVEGPNFEFA---TETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
             A+     +           E   + E+LL N  ++     +    +
Sbjct: 50  KGAVS-TDEYNMEDVKDYNESEFKIESEKLL-NFIKFRRTTRQFKDKE 95


>gi|322806085|emb|CBZ03652.1| NAD-reducing hydrogenase subunit HoxF [Clostridium botulinum H04402
           065]
          Length = 631

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 10/63 (15%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           +    ++CI C  C   CP   I            +   ++ I+  KCI CG C   CPV
Sbjct: 576 HYEITDKCIGCTKCARGCPVSCIIG----------KVKEKHFINQEKCIKCGNCYSVCPV 625

Query: 116 DAI 118
            AI
Sbjct: 626 GAI 628



 Score = 37.8 bits (86), Expect = 0.58,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 16/39 (41%)

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                RC  GT + + +     KCI C  C   CPV  I
Sbjct: 560 HVDEKRCPSGTCKNLLHYEITDKCIGCTKCARGCPVSCI 598


>gi|302336796|ref|YP_003802002.1| cobyrinic acid ac-diamide synthase [Spirochaeta smaragdinae DSM
           11293]
 gi|301633981|gb|ADK79408.1| Cobyrinic acid ac-diamide synthase [Spirochaeta smaragdinae DSM
           11293]
          Length = 290

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 21/72 (29%), Gaps = 11/72 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L      E  C  C  C + C   A+                        C  CG C   
Sbjct: 57  LPVPQIDEAICTGCGACSSFCRYGALVRIGKKVMTF-----------PNLCHSCGACMMV 105

Query: 113 CPVDAIVEGPNF 124
           CP  AI E P+F
Sbjct: 106 CPEGAISEKPSF 117


>gi|170758777|ref|YP_001788618.1| [Fe] hydrogenase [Clostridium botulinum A3 str. Loch Maree]
 gi|169405766|gb|ACA54177.1| [Fe] hydrogenase [Clostridium botulinum A3 str. Loch Maree]
          Length = 497

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 7/69 (10%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIKCIYCGLC 109
              + +C  C LC+ +CP  AI     P                 R  I+   CI CG C
Sbjct: 135 YIDQNKCRECGLCKKVCPYNAIVEVMRPCKKVCPTGALEINPEDKRAMIEKENCINCGAC 194

Query: 110 QEACPVDAI 118
             ACP  AI
Sbjct: 195 MAACPFGAI 203


>gi|153801160|ref|ZP_01955746.1| iron-sulfur cluster-binding protein [Vibrio cholerae MZO-3]
 gi|124123280|gb|EAY42023.1| iron-sulfur cluster-binding protein [Vibrio cholerae MZO-3]
          Length = 553

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 9/75 (12%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             C  C  C A+CP +A+                        C+ CGLC +ACP  A+  
Sbjct: 418 SDCTLCMSCVAVCPTRALHPAGDSPA---------LRFIEQDCVQCGLCVKACPEQALSA 468

Query: 121 GPNFEFATETRQELY 135
            P   +    RQ + 
Sbjct: 469 TPQLNWNKAARQGVV 483



 Score = 40.9 bits (94), Expect = 0.060,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 14/81 (17%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           C+ C   CPA A++ E   +         R  I+   C   G C  ACP +AI     + 
Sbjct: 186 CERCVDACPAGALSSEGSDQTGH------RIQINPYLCQGVGTCATACPTEAIH----YA 235

Query: 126 FA-TETRQELYYDKERLLNNG 145
                  Q+     ERLL N 
Sbjct: 236 LPNPTDTQKFI---ERLLANY 253



 Score = 33.9 bits (76), Expect = 7.5,   Method: Composition-based stats.
 Identities = 6/23 (26%), Positives = 8/23 (34%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIV 119
           +     C  C  C   CP  A+ 
Sbjct: 414 ECQASDCTLCMSCVAVCPTRALH 436


>gi|83590297|ref|YP_430306.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica ATCC
           39073]
 gi|83573211|gb|ABC19763.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Moorella
           thermoacetica ATCC 39073]
          Length = 1067

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 11/59 (18%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           C AC  C  +CP  A  I           +  R  ID + C  CG C  ACP  AI   
Sbjct: 875 CAACLTCVRVCPHGAPAI-----------KDHRSHIDPLLCQGCGACVAACPARAITLT 922


>gi|300854055|ref|YP_003779039.1| putative oxidoreductase [Clostridium ljungdahlii DSM 13528]
 gi|300434170|gb|ADK13937.1| putative oxidoreductase with a 2Fe-2S iron-sulfur cluster domain
           [Clostridium ljungdahlii DSM 13528]
          Length = 704

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 21/65 (32%), Gaps = 4/65 (6%)

Query: 59  GEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
              RCI+C  C  +C        +  E                +    C +CG C E CP
Sbjct: 144 DLNRCISCGRCVRMCKEVRGVNVLNYEITEDDRIMVDIRKHNSLKEENCRFCGACVEVCP 203

Query: 115 VDAIV 119
             A+ 
Sbjct: 204 TGALQ 208


>gi|289432692|ref|YP_003462565.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. GT]
 gi|288946412|gb|ADC74109.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. GT]
          Length = 640

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 10/64 (15%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            AL  +    ++C AC +C   CP  AI    G          + + I+  KCI CG C 
Sbjct: 557 KALLTFYIDPDKCKACMICARNCPTDAIKGGKG----------LIHTIEQGKCIKCGACV 606

Query: 111 EACP 114
           + CP
Sbjct: 607 DTCP 610



 Score = 37.4 bits (85), Expect = 0.70,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 20/53 (37%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           +         I++        +  + + ID  KC  C +C   CP DAI  G 
Sbjct: 536 KYFRHEYIDHIKNKHCEAGVCKALLTFYIDPDKCKACMICARNCPTDAIKGGK 588


>gi|238916582|ref|YP_002930099.1| coenzyme F420 hydrogenase [Eubacterium eligens ATCC 27750]
 gi|238871942|gb|ACR71652.1| coenzyme F420 hydrogenase [Eubacterium eligens ATCC 27750]
          Length = 299

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 11/58 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           ++CI C +CE  C   AIT++ G              +D  KC YCG C ++CP DA 
Sbjct: 176 DKCIGCGVCEKACRTGAITMQDGKVA-----------VDYDKCNYCGRCAKSCPTDAW 222



 Score = 38.5 bits (88), Expect = 0.32,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 3/50 (6%)

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C    +  E       G       +    KCI CG+C++AC   AI    
Sbjct: 151 CQNNCLKAEENDVGIKGAADVKWIE---DKCIGCGVCEKACRTGAITMQD 197


>gi|164686864|ref|ZP_02210892.1| hypothetical protein CLOBAR_00460 [Clostridium bartlettii DSM
           16795]
 gi|164604254|gb|EDQ97719.1| hypothetical protein CLOBAR_00460 [Clostridium bartlettii DSM
           16795]
          Length = 273

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/108 (19%), Positives = 39/108 (36%), Gaps = 16/108 (14%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            +   +E+CI C  C   CP   I++                +I+  +C  CG C   CP
Sbjct: 1   MFSVNKEKCIGCSQCVKDCPVSTISLVDNKA-----------EINNERCFKCGHCIAICP 49

Query: 115 VDAIVEGPNFEFAT---ETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
           V+A+    ++               + + LL N  ++   + R    +
Sbjct: 50  VEAVS-TDDYNMEDVIPYDNDSFTVEADNLL-NFIKFRRSVRRFKDKE 95


>gi|153938741|ref|YP_001390542.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum F str.
           Langeland]
 gi|152934637|gb|ABS40135.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum F str.
           Langeland]
 gi|295318623|gb|ADF99000.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum F str.
           230613]
          Length = 1172

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 43/126 (34%), Gaps = 24/126 (19%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA---QAITIESGPRCHDGTRRTV--- 94
           G+TS   RG   +       ++CI C  C  ICP    +A  +    +    +       
Sbjct: 668 GTTSYEKRGIAVMIPEWQ-IDKCIQCNQCSYICPHSVIRAYLLNKDEKEKSPSAFETKKA 726

Query: 95  ----------RYDIDMIKCIYCGLCQEACPVD--AIVEGP---NFEFATETRQ--ELYYD 137
                     R  I  + C  CG C + CP    A++        E  +E  +       
Sbjct: 727 TGKGLEELGYRIQISPLDCTGCGNCADVCPAPGKALIMRNAEEQIEMQSENWEFGLNITT 786

Query: 138 KERLLN 143
           KE L++
Sbjct: 787 KENLMD 792


>gi|153007710|ref|YP_001368925.1| dihydropyrimidine dehydrogenase [Ochrobactrum anthropi ATCC 49188]
 gi|151559598|gb|ABS13096.1| dihydroorotate dehydrogenase family protein [Ochrobactrum anthropi
           ATCC 49188]
          Length = 436

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 6/87 (6%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI C  C       A    S             +++   +C+ 
Sbjct: 330 QYLNLNYVTKARIDQDSCIKCGRCHI-----ACEDTSHQAITSLVNGARHFEVIDEECVG 384

Query: 106 CGLCQEACPV-DAIVEGPNFEFATETR 131
           C LC   CPV D I      +F   T+
Sbjct: 385 CNLCVNVCPVEDCITMEQIGDFDPRTK 411


>gi|20089581|ref|NP_615656.1| flavoprotein [Methanosarcina acetivorans C2A]
 gi|19914498|gb|AAM04136.1| flavoprotein [Methanosarcina acetivorans C2A]
          Length = 239

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
             Y    ++C  C+ C           E+ P      +  V   I+++KC  CG+C+E C
Sbjct: 144 MPYNIDRKQCRHCETC--------PPRENCPHGAITEKNGVTDQIELLKCKGCGICKELC 195

Query: 114 PVDAIVEGP 122
           P +AI  GP
Sbjct: 196 PYNAIKGGP 204


>gi|147669425|ref|YP_001214243.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. BAV1]
 gi|146270373|gb|ABQ17365.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. BAV1]
          Length = 640

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 10/64 (15%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            AL  +    ++C AC +C   CP  AI    G          + + I+  KCI CG C 
Sbjct: 557 KALLTFYIDPDKCKACMICARNCPTDAIKGGKG----------LIHTIEQGKCIKCGACV 606

Query: 111 EACP 114
           + CP
Sbjct: 607 DTCP 610



 Score = 37.4 bits (85), Expect = 0.70,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 20/53 (37%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           +         I++        +  + + ID  KC  C +C   CP DAI  G 
Sbjct: 536 KYFRHEYIDHIKNKHCEAGVCKALLTFYIDPDKCKACMICARNCPTDAIKGGK 588


>gi|226944039|ref|YP_002799112.1| electron transport complex protein RnfB [Azotobacter vinelandii DJ]
 gi|226718966|gb|ACO78137.1| Electron transport complex, subunit B [Azotobacter vinelandii DJ]
          Length = 187

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 34/103 (33%), Gaps = 10/103 (9%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100
                   GE         E  CI C  C   CP  AI   +             + +  
Sbjct: 88  PEPLDAPEGEKPRMVARIREAECIGCTKCLQACPVDAIVGAA----------RHMHTVIA 137

Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLN 143
            +C  C LC E CPVD I   P  +   + + +L     RL+ 
Sbjct: 138 AECTGCDLCVEPCPVDCIDMLPIADTPQDWKWDLPLPPGRLIA 180


>gi|319789069|ref|YP_004150702.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermovibrio
           ammonificans HB-1]
 gi|317113571|gb|ADU96061.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermovibrio
           ammonificans HB-1]
          Length = 58

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 10/65 (15%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
             +    E CI C  C ++CP   I      +          Y+I    CI CG C E C
Sbjct: 1   MAHKIDPELCIGCGACASVCPTNCIHPTDDGK----------YEIVAEDCIDCGACVEVC 50

Query: 114 PVDAI 118
           P +AI
Sbjct: 51  PTNAI 55



 Score = 38.2 bits (87), Expect = 0.38,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 2/37 (5%)

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPN--FEFATET 130
           + ID   CI CG C   CP + I    +  +E   E 
Sbjct: 3   HKIDPELCIGCGACASVCPTNCIHPTDDGKYEIVAED 39


>gi|302379538|ref|ZP_07268023.1| protein HymB [Finegoldia magna ACS-171-V-Col3]
 gi|303234547|ref|ZP_07321184.1| protein HymB [Finegoldia magna BVS033A4]
 gi|302312445|gb|EFK94441.1| protein HymB [Finegoldia magna ACS-171-V-Col3]
 gi|302494381|gb|EFL54150.1| protein HymB [Finegoldia magna BVS033A4]
          Length = 626

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 16/96 (16%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            L+Y F+ +   +   +K           AL  Y    ++CI C  C   CP   I    
Sbjct: 544 TLKY-FRNEYEAHIYDKKCPAHAC----KALLSYEI-TDKCIGCTKCAKNCPVSCIEGAV 597

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +          + ID  +CI CG C+  CPV A+
Sbjct: 598 KKQ----------HVIDKSQCIKCGNCETVCPVHAV 623


>gi|282926858|ref|ZP_06334485.1| formate dehydrogenase [Staphylococcus aureus A10102]
 gi|282591309|gb|EFB96382.1| formate dehydrogenase [Staphylococcus aureus A10102]
          Length = 984

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 29/89 (32%), Gaps = 13/89 (14%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P+EK               Y     +CI C  C   C    +             R +  
Sbjct: 131 PYEKDYGP----------FYRYDPNQCILCGRCVEACQDIEVNETIRIDWDREHPRVIWD 180

Query: 97  D---IDMIKCIYCGLCQEACPVDAIVEGP 122
           +   I+   C+ CG C   CP +A++E  
Sbjct: 181 NDVPINESSCVSCGQCATVCPCNAMMEVN 209



 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 17/68 (25%), Gaps = 8/68 (11%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105
           R        C  C      CE      A                      Y  D  +CI 
Sbjct: 90  RILEKHMLYCTVCDYNNGDCEIHNTMDAWGLQHQTYEYKEKPYEKDYGPFYRYDPNQCIL 149

Query: 106 CGLCQEAC 113
           CG C EAC
Sbjct: 150 CGRCVEAC 157


>gi|229520552|ref|ZP_04409976.1| iron-sulfur cluster-binding protein [Vibrio cholerae TM 11079-80]
 gi|229342376|gb|EEO07370.1| iron-sulfur cluster-binding protein [Vibrio cholerae TM 11079-80]
          Length = 553

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 9/75 (12%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             C  C  C A+CP +A+                        C+ CGLC +ACP  A+  
Sbjct: 418 SDCTLCMSCVAVCPTRALHPAGDSPA---------LRFIEQDCVQCGLCVKACPEQALSA 468

Query: 121 GPNFEFATETRQELY 135
            P   +    RQ + 
Sbjct: 469 TPQLNWNKAARQGVV 483



 Score = 40.9 bits (94), Expect = 0.058,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 14/81 (17%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           C+ C   CPA A++ E   +         R  I+   C   G C  ACP +AI     + 
Sbjct: 186 CERCVDACPAGALSSEGTDQTGH------RIQINPYLCQGVGTCATACPTEAIH----YA 235

Query: 126 FA-TETRQELYYDKERLLNNG 145
                  Q+     ERLL N 
Sbjct: 236 LPNPTDTQKFI---ERLLANY 253



 Score = 33.9 bits (76), Expect = 7.5,   Method: Composition-based stats.
 Identities = 6/23 (26%), Positives = 8/23 (34%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIV 119
           +     C  C  C   CP  A+ 
Sbjct: 414 ECQTSDCTLCMSCVAVCPTRALH 436


>gi|188585339|ref|YP_001916884.1| formate dehydrogenase, alpha subunit [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350026|gb|ACB84296.1| formate dehydrogenase, alpha subunit [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 900

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 8/81 (9%)

Query: 55  RYPNGEERCIACKLCEAIC--PAQAITIESGPRCHDGTRRTVRYD-IDMIKCIYCGLCQE 111
            +     +CI C  C +IC     A   +   R  D    +   D +    C +CG+C  
Sbjct: 147 FFFRDYGKCIMCGKCVSICAEINGAYVYDFMDRGFDSKVTSAFDDELQNTTCTFCGMCVN 206

Query: 112 ACPVDAIVEGPNFEFATETRQ 132
            CPV A+V     E + E R 
Sbjct: 207 VCPVGALV-----ERSVEWRS 222



 Score = 33.9 bits (76), Expect = 8.1,   Method: Composition-based stats.
 Identities = 8/51 (15%), Positives = 12/51 (23%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
                  C  C +C  +CP  A+   S                     + C
Sbjct: 191 DELQNTTCTFCGMCVNVCPVGALVERSVEWRSRPWEVDKVLTTCPYCGVGC 241


>gi|125975598|ref|YP_001039508.1| pyruvate flavodoxin/ferredoxin oxidoreductase-like protein
           [Clostridium thermocellum ATCC 27405]
 gi|125715823|gb|ABN54315.1| pyruvate flavodoxin/ferredoxin oxidoreductase-like protein
           [Clostridium thermocellum ATCC 27405]
          Length = 1178

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/134 (18%), Positives = 38/134 (28%), Gaps = 41/134 (30%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA----------------ITIE 81
           +EK   +P               ++CI C  C  +CP                       
Sbjct: 675 YEKRGIAPMIPEWQI--------DKCIQCGQCSFVCPHSTIRLFLLNDEELSRAPETFTT 726

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV--DAIVEGP----------NFEFATE 129
                        R  +  + C  CG C + CP    A++  P          N+EFA  
Sbjct: 727 KKAIGKGFENLHFRVQVSPLDCTGCGNCADVCPTKEKALIMKPAEEQIEKQADNWEFAMT 786

Query: 130 TRQELYYDKERLLN 143
                   K+ LL+
Sbjct: 787 -----VTQKDNLLD 795


>gi|90418415|ref|ZP_01226327.1| dihydroorotate dehydrogenase [Aurantimonas manganoxydans SI85-9A1]
 gi|90338087|gb|EAS51738.1| dihydroorotate dehydrogenase [Aurantimonas manganoxydans SI85-9A1]
          Length = 447

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 6/79 (7%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    +++CI+C  C       A    S            ++++   +C+ 
Sbjct: 329 QYLNLNYVTKARIDQDKCISCGRCHI-----ACEDTSHQAITSMLDGIRKFEVIDEECVG 383

Query: 106 CGLCQEACPV-DAIVEGPN 123
           C LC + CPV D I     
Sbjct: 384 CNLCVDVCPVEDCITMERI 402


>gi|312879271|ref|ZP_07739071.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260]
 gi|310782562|gb|EFQ22960.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260]
          Length = 621

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 31/91 (34%), Gaps = 14/91 (15%)

Query: 36  YPFEKGSTSPRFRGEHA----LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
           +P E      +          L       E C+ C  C+  CP  AI+ E+         
Sbjct: 535 FPEEYREHEEQGFCRAGVCTGLFVVRVTPESCVGCGACKRACPVGAISGETRQAHS---- 590

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                 +D   CI CG C + CP  A+   P
Sbjct: 591 ------VDPTACIGCGACLDTCPFGALSPAP 615



 Score = 38.5 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 8/54 (14%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
             E G              +    C+ CG C+ ACPV AI        + ETRQ
Sbjct: 542 HEEQGFCRAGVCTGLFVVRVTPESCVGCGACKRACPVGAI--------SGETRQ 587


>gi|309776276|ref|ZP_07671265.1| periplasmic [Fe] hydrogenase 1 [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308915956|gb|EFP61707.1| periplasmic [Fe] hydrogenase 1 [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 482

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 6/70 (8%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY------DIDMIKCIYCGL 108
                 ++C  C  C+  CP  AI     P         +R        ID  KCI CG 
Sbjct: 127 HAFIDYDKCKECGACKNACPFNAIVETQRPCMKSCPVDAIRMGEDGLAKIDEAKCINCGA 186

Query: 109 CQEACPVDAI 118
           CQ  CP  AI
Sbjct: 187 CQAKCPFGAI 196



 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 26/86 (30%), Gaps = 5/86 (5%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG-----TRRTVR 95
           G        ++  +     E  C  C + +           +                  
Sbjct: 68  GKPPVPVENDNKRQIVRVIEAACDGCSIHKIQVTDNCRKCMAKACLSACKFDAIHMGEDH 127

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEG 121
             ID  KC  CG C+ ACP +AIVE 
Sbjct: 128 AFIDYDKCKECGACKNACPFNAIVET 153


>gi|292488197|ref|YP_003531079.1| electron transport complex protein RnfB [Erwinia amylovora
           CFBP1430]
 gi|292899403|ref|YP_003538772.1| electron transport complex protein [Erwinia amylovora ATCC 49946]
 gi|291199251|emb|CBJ46368.1| electron transport complex protein [Erwinia amylovora ATCC 49946]
 gi|291553626|emb|CBA20671.1| Electron transport complex protein rnfB [Erwinia amylovora
           CFBP1430]
 gi|312172334|emb|CBX80591.1| Electron transport complex protein rnfB [Erwinia amylovora ATCC
           BAA-2158]
          Length = 191

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 27/96 (28%), Gaps = 10/96 (10%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E          +   +     E  CI C  C   CP  AI   +             + +
Sbjct: 92  EPQPLGDEETRQPERKVAWIDEANCIGCTKCIQACPVDAIVGAT----------RAMHTV 141

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134
               C  C LC   CP D I   P        + +L
Sbjct: 142 LSDICTGCDLCVAPCPTDCIEMRPVATTTANWKWDL 177


>gi|226323786|ref|ZP_03799304.1| hypothetical protein COPCOM_01561 [Coprococcus comes ATCC 27758]
 gi|225207970|gb|EEG90324.1| hypothetical protein COPCOM_01561 [Coprococcus comes ATCC 27758]
          Length = 1175

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/121 (21%), Positives = 33/121 (27%), Gaps = 21/121 (17%)

Query: 28  FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA------------ 75
           FK     + P   G+ +   RG           E CI C  C  +CP             
Sbjct: 657 FKDYVDGSTP--SGTAAYEKRGIAVDIPIWQ-SETCIQCNRCAYVCPHAAIRPVALTEEE 713

Query: 76  --QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP----VDAIVEGPNFEFATE 129
             +A                    +    C  CG C   CP      A+V G   E A E
Sbjct: 714 LAKAPEGLKAIDMIGMPGMKFTMTVSAYDCTGCGSCANVCPGKKGEKALVMGNMEENAGE 773

Query: 130 T 130
            
Sbjct: 774 Q 774


>gi|159041649|ref|YP_001540901.1| thiamine pyrophosphate binding domain-containing protein
           [Caldivirga maquilingensis IC-167]
 gi|157920484|gb|ABW01911.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Caldivirga maquilingensis IC-167]
          Length = 606

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 10/71 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           + ++    + C AC +C  +    AI      +            ID   C+ C +C + 
Sbjct: 535 IVKFTVDPDACKACGICYNLIACPAIAPLENRKA----------WIDPNMCVGCSVCAQV 584

Query: 113 CPVDAIVEGPN 123
           CP +AI    N
Sbjct: 585 CPYNAIKPSGN 595


>gi|126459993|ref|YP_001056271.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum calidifontis JCM 11548]
 gi|126249714|gb|ABO08805.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           calidifontis JCM 11548]
          Length = 369

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 10/62 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              +CI C +C   CP  A+                   +D   C  CGLC   CPV+AI
Sbjct: 83  DSGKCIWCGICAKACPFSAVKYAERKYVE----------VDYGLCADCGLCNAVCPVEAI 132

Query: 119 VE 120
             
Sbjct: 133 QM 134



 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 11/77 (14%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C  C  C  +CP  A+++           R     I    CI CGLC E CP   +  
Sbjct: 257 QGCTLCGACVNVCPTDALSL-----------REFELRIVPALCIGCGLCAEKCPEGVMRV 305

Query: 121 GPNFEFATETRQELYYD 137
             +   A   R+ L+ D
Sbjct: 306 SESPSPAPYERKTLFRD 322


>gi|113867168|ref|YP_725657.1| ferredoxin [Ralstonia eutropha H16]
 gi|113525944|emb|CAJ92289.1| Predicted NADH:ubiquinone oxidoreductase,subunit RnfB [Ralstonia
           eutropha H16]
          Length = 269

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 26/84 (30%), Gaps = 10/84 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E     P    E         E  CI C LC   CP  AI   +             + +
Sbjct: 64  EPLPLDPERGSEQPRAVARIDESLCIGCTLCIQACPVDAIAGAAKQ----------MHTV 113

Query: 99  DMIKCIYCGLCQEACPVDAIVEGP 122
               C  C LC   CPVD I   P
Sbjct: 114 IPDWCTGCDLCVAPCPVDCIDMVP 137


>gi|67924601|ref|ZP_00518015.1| Pyruvate decarboxylase:4Fe-4S ferredoxin, iron-sulfur
           binding:Pyruvate ferredoxin/flavodoxin
           oxidoreductase:Pyruvate flavodoxin/ferredoxin
           oxidoreductase, N-terminal [Crocosphaera watsonii WH
           8501]
 gi|67853552|gb|EAM48897.1| Pyruvate decarboxylase:4Fe-4S ferredoxin, iron-sulfur
           binding:Pyruvate ferredoxin/flavodoxin
           oxidoreductase:Pyruvate flavodoxin/ferredoxin
           oxidoreductase, N-terminal [Crocosphaera watsonii WH
           8501]
          Length = 1210

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 28/105 (26%), Gaps = 26/105 (24%)

Query: 58  NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTV----RYDID 99
             ++ C+ C  C  +CP                A          D   R         + 
Sbjct: 688 WDQDICVQCGKCVLVCPHAVIRSKVYEEAALTNAPVSFKSANAKDSDWRKTELKFTIQVA 747

Query: 100 MIKCIYCGLCQEACPV--------DAIVEGPNFEFATETRQELYY 136
              C  CG+C + CP          AI   P      + R+   Y
Sbjct: 748 AEDCTGCGVCVDVCPAKNKSQPKLKAINMAPQLPIREQERENWDY 792


>gi|323700272|ref|ZP_08112184.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfovibrio sp.
           ND132]
 gi|323460204|gb|EGB16069.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfovibrio
           desulfuricans ND132]
          Length = 1196

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 22/104 (21%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------------------ITIE 81
             +TS   +   A+       + CI C  C  +CP  A                   T+E
Sbjct: 663 PTATSKYEKRGVAINVPQWIADNCIQCNQCAFVCPHAALRPVLLTEAELAGAPATFATVE 722

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV--DAIVEGPN 123
           +  +   G R   R  ++ + C+ CG C + CP    A+V  P 
Sbjct: 723 AKGKDVQGMRY--RMQVNTLDCLGCGNCADICPAKDKALVMRPI 764


>gi|331683136|ref|ZP_08383737.1| electron transport complex protein RnfC [Escherichia coli H299]
 gi|331079351|gb|EGI50548.1| electron transport complex protein RnfC [Escherichia coli H299]
          Length = 624

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQNCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|300856866|ref|YP_003781850.1| putative iron-dependent hydrogenase [Clostridium ljungdahlii DSM
           13528]
 gi|300436981|gb|ADK16748.1| putative iron-dependent hydrogenase [Clostridium ljungdahlii DSM
           13528]
          Length = 495

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 7/69 (10%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTR-------RTVRYDIDMIKCIYCGLC 109
              ++ C  C +C+ +CP  AI     P              +     I+  KCI CG C
Sbjct: 135 HINQDICKECGMCKKVCPYNAIAEVMRPCKKSCPTGALEINSKNRMAMIEKEKCINCGAC 194

Query: 110 QEACPVDAI 118
             ACP  A+
Sbjct: 195 MAACPFGAV 203



 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 3/52 (5%)

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           C      + + +          +   R  I+   C  CG+C++ CP +AI E
Sbjct: 110 CRGCIQHKCMEVCPAKAIS---KVDGRAHINQDICKECGMCKKVCPYNAIAE 158


>gi|167376288|ref|XP_001733938.1| pyruvate dehydrogenase [Entamoeba dispar SAW760]
 gi|165904771|gb|EDR29927.1| pyruvate dehydrogenase, putative [Entamoeba dispar SAW760]
          Length = 1163

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 28/87 (32%), Gaps = 16/87 (18%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTR---------------RTVRYDIDMIK 102
               +C+ C +C   CP  AI          G                    R  +  + 
Sbjct: 678 WEASKCVQCNMCSLYCPHAAIRCFYLTPEETGKAPAEFVQIDGKGQQAGYKFRIQVSAMD 737

Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATE 129
           C  C +C  ACPV  +   P FE  +E
Sbjct: 738 CTGCEVCTTACPVKCLTMTP-FEQVSE 763


>gi|218780385|ref|YP_002431703.1| nitroreductase [Desulfatibacillum alkenivorans AK-01]
 gi|218761769|gb|ACL04235.1| nitroreductase [Desulfatibacillum alkenivorans AK-01]
          Length = 347

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 46/121 (38%), Gaps = 13/121 (10%)

Query: 47  FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
           F  +     +   +E+CI C  C   CP Q + ++S  +     R          +CI C
Sbjct: 10  FPPKTDFPIFQVDDEKCIGCGRCVNSCPIQLLMLDSDKKARPNERYD------HFRCICC 63

Query: 107 GLCQEACPVDAIVEGPNFEFA-TETRQELYYD-----KERLL-NNGDRWESEIVRNIVTD 159
             C  +CP DAI    ++       + +  ++      + L   NG ++E    +   T+
Sbjct: 64  QNCAASCPNDAITIQGDYRVHEGFWKNDNLFEGGKTFPDPLYSRNGAKYEDYEDQLTETE 123

Query: 160 S 160
            
Sbjct: 124 K 124


>gi|116872240|ref|YP_849021.1| pyruvate-flavodoxin oxidoreductase [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|116741118|emb|CAK20238.1| pyruvate-flavodoxin oxidoreductase [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 1217

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 34/105 (32%), Gaps = 16/105 (15%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCH 87
              T+   +   AL       E C  C  C  +CP  AI              E      
Sbjct: 669 PPGTAAYEKRGIALEVPEWISENCTMCNECAFVCPHAAIRPILTNEEEMESAPEGFMTRE 728

Query: 88  DGTRRTVRYDID--MIKCIYCGLCQEACP--VDAIVEGPNFEFAT 128
              +  +RY I    + C  C LC E CP    A+V  P  E A 
Sbjct: 729 MRGKDGLRYRIQVSPMDCTGCNLCAETCPAKEKALVMKPFEEVAE 773



 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 5/80 (6%)

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV--EGPNFEFATETRQ 132
           + A    +      G    V   I    C  C  C   CP  AI        E   E+  
Sbjct: 665 SGAYPPGTAAYEKRGIALEVPEWI-SENCTMCNECAFVCPHAAIRPILTNEEEM--ESAP 721

Query: 133 ELYYDKERLLNNGDRWESEI 152
           E +  +E    +G R+  ++
Sbjct: 722 EGFMTREMRGKDGLRYRIQV 741


>gi|325958954|ref|YP_004290420.1| methyl-viologen-reducing hydrogenase subunit delta
           [Methanobacterium sp. AL-21]
 gi|325330386|gb|ADZ09448.1| methyl-viologen-reducing hydrogenase delta subunit
           [Methanobacterium sp. AL-21]
          Length = 777

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 30/89 (33%), Gaps = 7/89 (7%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC-------HDGTRRTVRY 96
           S  F      +     + +CI+C  C  +CP +     +                    Y
Sbjct: 235 SGNFNLLVEKKPSYVIKGKCISCGNCAEVCPVEVSDSWNEDMTTRKAIFKPFPQAVPDVY 294

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
            ID   C  CG CQ+ C ++AI      E
Sbjct: 295 TIDHENCKKCGKCQDVCRMNAIDLDMETE 323



 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 41/118 (34%), Gaps = 19/118 (16%)

Query: 42  STSPRFRGEHALRRY--PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
             S    G   L  +       +C  C+ C  IC  +A  I+                ID
Sbjct: 565 KVSELIHGGVELEPFIAKVDNSKCNLCQKCIDICSFKAAFIQEN-----------VLKID 613

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIV 157
            I C  CG C   C  +AI      +   +T ++L+   + +L N    E  I+  + 
Sbjct: 614 PIACNGCGACIAECETNAI------DIIGQTDEQLFAMIDGMLINKKPDEKRIIAFLD 665


>gi|325970481|ref|YP_004246672.1| cobyrinic acid ac-diamide synthase [Spirochaeta sp. Buddy]
 gi|324025719|gb|ADY12478.1| Cobyrinic acid ac-diamide synthase [Spirochaeta sp. Buddy]
          Length = 291

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 30/85 (35%), Gaps = 16/85 (18%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
           FEK   S  F     L +       CIAC  C  +C   A+                 Y 
Sbjct: 48  FEKEQKSDYF----GLPKAVIDSSLCIACNRCFEVCRFDAVIPGP------------TYR 91

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           ID+I C  C  C   CPV AI   P
Sbjct: 92  IDLITCEGCTYCLHVCPVGAIHTQP 116


>gi|289193249|ref|YP_003459190.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
 gi|288939699|gb|ADC70454.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
          Length = 354

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 34/73 (46%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R     R     +  C+ C +C  ICP +AIT+        G     + DID  KC+ CG
Sbjct: 16  RDGVEKRELMWNDYLCVGCGICYDICPTKAITMGPLGAIAKGIVDAPKLDIDENKCVLCG 75

Query: 108 LCQEACPVDAIVE 120
           LC  +CP DA+  
Sbjct: 76  LCAASCPFDAMDL 88



 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           +++C+ C+ CE +CP  AI +E               +I+  KC+ CG+C E CP DAI 
Sbjct: 113 QDKCVLCEQCEMVCPQGAIEVERDL-PERKKFVIGEININKEKCVLCGICAEYCPADAIN 171

Query: 120 EGPNF 124
              N+
Sbjct: 172 LKYNY 176



 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 34/71 (47%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R +  +      +E+C+ C +C   CPA AI ++         +     ++D   C++C 
Sbjct: 140 RKKFVIGEININKEKCVLCGICAEYCPADAINLKYNYPTPTNPKPITDIEVDKDACVFCK 199

Query: 108 LCQEACPVDAI 118
           +C+  CP DAI
Sbjct: 200 VCEFVCPHDAI 210



 Score = 42.4 bits (98), Expect = 0.018,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 8/83 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P         F+GE  +       + C  C+ C AICP  A+     P+      +  R
Sbjct: 253 CPAGAIEVEKPFKGEVII-----DLDACNGCEACVAICPCNALEF---PKSEKKGEKVPR 304

Query: 96  YDIDMIKCIYCGLCQEACPVDAI 118
             ++   C+ CG C +ACPV+AI
Sbjct: 305 IIVNQNLCVLCGACAKACPVNAI 327



 Score = 40.9 bits (94), Expect = 0.065,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 6/107 (5%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG-----PRCHDGTRRTV 94
            G      +G     +    E +C+ C LC A CP  A+ ++               +  
Sbjct: 48  MGPLGAIAKGIVDAPKLDIDENKCVLCGLCAASCPFDAMDLKINGKSIKEDERYPKIKRK 107

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNF-EFATETRQELYYDKER 140
              I   KC+ C  C+  CP  AI    +  E       E+  +KE+
Sbjct: 108 SIKIYQDKCVLCEQCEMVCPQGAIEVERDLPERKKFVIGEININKEK 154



 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 8/80 (10%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR--------YDIDMIKCI 104
           +      ++ C+ CK+CE +CP  AI +            T +          ++   C+
Sbjct: 185 ITDIEVDKDACVFCKVCEFVCPHDAIEVICYKCPFIKKIPTAKLYDDIKGKVTVNEELCV 244

Query: 105 YCGLCQEACPVDAIVEGPNF 124
            CG C   CP  AI     F
Sbjct: 245 ACGWCAYICPAGAIEVEKPF 264



 Score = 38.5 bits (88), Expect = 0.30,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 32/86 (37%), Gaps = 9/86 (10%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
             PF K         +    +    EE C+AC  C  ICPA AI +E   +         
Sbjct: 216 KCPFIK-KIPTAKLYDDIKGKVTVNEELCVACGWCAYICPAGAIEVEKPFKGE------- 267

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVE 120
              ID+  C  C  C   CP +A+  
Sbjct: 268 -VIIDLDACNGCEACVAICPCNALEF 292



 Score = 35.1 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 103 CIYCGLCQEACPVDAIVEGP 122
           C+ CG+C + CP  AI  GP
Sbjct: 31  CVGCGICYDICPTKAITMGP 50


>gi|254832206|ref|ZP_05236861.1| hypothetical protein Lmon1_12699 [Listeria monocytogenes 10403S]
          Length = 1215

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 34/104 (32%), Gaps = 16/104 (15%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCH 87
              T+   +   AL       E C  C  C  +CP  AI              E      
Sbjct: 669 PPGTAAYEKRGIALEVPEWISENCTMCNECAFVCPHAAIRPILTDEEEMESAPEGFMTRE 728

Query: 88  DGTRRTVRYDID--MIKCIYCGLCQEACP--VDAIVEGPNFEFA 127
              +  +RY I    + C  C LC E CP    A+V  P  E A
Sbjct: 729 MRGKDGLRYRIQVSPMDCTGCNLCAETCPAKEKALVMKPFEEVA 772



 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 5/80 (6%)

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV--EGPNFEFATETRQ 132
           + A    +      G    V   I    C  C  C   CP  AI        E   E+  
Sbjct: 665 SGAYPPGTAAYEKRGIALEVPEWI-SENCTMCNECAFVCPHAAIRPILTDEEEM--ESAP 721

Query: 133 ELYYDKERLLNNGDRWESEI 152
           E +  +E    +G R+  ++
Sbjct: 722 EGFMTREMRGKDGLRYRIQV 741


>gi|296126798|ref|YP_003634050.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit [Brachyspira
           murdochii DSM 12563]
 gi|296018614|gb|ADG71851.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit [Brachyspira
           murdochii DSM 12563]
          Length = 344

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 1/58 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-IDMIKCIYCGLCQEACPV 115
             + CI C  CE +CP   I  E GP   D ++  +    ID   C  C  C  ACP 
Sbjct: 252 NPKNCIDCANCEVVCPDLCIVWEKGPDRKDASKIAMNMMGIDYQYCKGCLKCVRACPK 309


>gi|224500444|ref|ZP_03668793.1| hypothetical protein LmonF1_12559 [Listeria monocytogenes Finland
           1988]
          Length = 1215

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 34/104 (32%), Gaps = 16/104 (15%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCH 87
              T+   +   AL       E C  C  C  +CP  AI              E      
Sbjct: 669 PPGTAAYEKRGIALEVPEWISENCTMCNECAFVCPHAAIRPILTDEEEMESAPEGFMTRE 728

Query: 88  DGTRRTVRYDID--MIKCIYCGLCQEACP--VDAIVEGPNFEFA 127
              +  +RY I    + C  C LC E CP    A+V  P  E A
Sbjct: 729 MRGKDGLRYRIQVSPMDCTGCNLCAETCPAKEKALVMKPFEEVA 772



 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 5/80 (6%)

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV--EGPNFEFATETRQ 132
           + A    +      G    V   I    C  C  C   CP  AI        E   E+  
Sbjct: 665 SGAYPPGTAAYEKRGIALEVPEWI-SENCTMCNECAFVCPHAAIRPILTDEEEM--ESAP 721

Query: 133 ELYYDKERLLNNGDRWESEI 152
           E +  +E    +G R+  ++
Sbjct: 722 EGFMTREMRGKDGLRYRIQV 741


>gi|218548775|ref|YP_002382566.1| electron transport complex protein RnfC [Escherichia fergusonii
           ATCC 35469]
 gi|226735446|sp|B7LQP1|RNFC_ESCF3 RecName: Full=Electron transport complex protein rnfC
 gi|218356316|emb|CAQ88934.1| putative 4Fe-4S ferredoxin-type protein fused with unknown protein
           [Escherichia fergusonii ATCC 35469]
          Length = 726

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 36/112 (32%), Gaps = 9/112 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQGCIRCSSCADACPAD-LLPQQLYWFSKGQQHDKATAHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQELYY--DKERLLNNGDRWESEIVRNIVTDSP 161
            I     F     E A   ++E      K R      R E E    +     
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEERRAAEAKARFEARQARLEREKAARLERHKK 480


>gi|254828912|ref|ZP_05233599.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria
           monocytogenes FSL N3-165]
 gi|258601323|gb|EEW14648.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria
           monocytogenes FSL N3-165]
          Length = 1215

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 34/104 (32%), Gaps = 16/104 (15%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCH 87
              T+   +   AL       E C  C  C  +CP  AI              E      
Sbjct: 669 PPGTAAYEKRGIALEVPEWISENCTMCNECAFVCPHAAIRPILTDEEEMESAPEGFMTRE 728

Query: 88  DGTRRTVRYDID--MIKCIYCGLCQEACP--VDAIVEGPNFEFA 127
              +  +RY I    + C  C LC E CP    A+V  P  E A
Sbjct: 729 MRGKDGLRYRIQVSPMDCTGCNLCAETCPAKEKALVMKPFEEVA 772



 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 5/80 (6%)

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV--EGPNFEFATETRQ 132
           + A    +      G    V   I    C  C  C   CP  AI        E   E+  
Sbjct: 665 SGAYPPGTAAYEKRGIALEVPEWI-SENCTMCNECAFVCPHAAIRPILTDEEEM--ESAP 721

Query: 133 ELYYDKERLLNNGDRWESEI 152
           E +  +E    +G R+  ++
Sbjct: 722 EGFMTREMRGKDGLRYRIQV 741


>gi|153815664|ref|ZP_01968332.1| hypothetical protein RUMTOR_01900 [Ruminococcus torques ATCC 27756]
 gi|317501942|ref|ZP_07960126.1| Pyruvate:ferredoxin oxidoreductase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331088243|ref|ZP_08337162.1| pyruvate:ferredoxin oxidoreductase [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145846905|gb|EDK23823.1| hypothetical protein RUMTOR_01900 [Ruminococcus torques ATCC 27756]
 gi|316896622|gb|EFV18709.1| Pyruvate:ferredoxin oxidoreductase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330408487|gb|EGG87953.1| pyruvate:ferredoxin oxidoreductase [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 1181

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 32/99 (32%), Gaps = 19/99 (19%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQ-----AITIESGPRCHDGTRRTVRYDIDMIK 102
           RG           + CI C  C  +CP       A+T E      +G +      +  +K
Sbjct: 680 RGIAVDIPIWQ-PDNCIQCNRCAYVCPHAVIRPVALTEEEAANAPEGMQSIPMIGMPDMK 738

Query: 103 ---------CIYCGLCQEACP----VDAIVEGPNFEFAT 128
                    C  CG C   CP      A+V G   E A 
Sbjct: 739 FAITVSAYDCTGCGSCANVCPGKKGEKALVMGNMEENAG 777


>gi|119872881|ref|YP_930888.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum islandicum DSM 4184]
 gi|119674289|gb|ABL88545.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           islandicum DSM 4184]
          Length = 368

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 10/62 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            + +CI C +C   CPA A                    +   +CI CGLC   CPV+A+
Sbjct: 80  DQAKCIWCGMCVRSCPATAFEYVERKSI----------RVRYDRCIDCGLCNAVCPVEAV 129

Query: 119 VE 120
             
Sbjct: 130 KM 131



 Score = 42.0 bits (97), Expect = 0.024,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 36/107 (33%), Gaps = 26/107 (24%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEER--------CIACKLCEAICPAQAITIESGPRCHDGT 90
           EK    P  R +  +     G           C  C  C  +CP  A++I          
Sbjct: 224 EKAPLQPGDRWQTRMLAVALGMSVGRVEVAGGCTLCGACVNVCPTDALSI---------- 273

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
            +     +    CI CG+C E CP   I  G        TR++  Y+
Sbjct: 274 -KGFELRLTPALCIACGVCVEKCPEKVIKIGK-------TREDKPYE 312


>gi|147918998|ref|YP_687275.1| 2(4Fe-4S) ferredoxin-domain-containing protein [uncultured
           methanogenic archaeon RC-I]
 gi|110622671|emb|CAJ37949.1| 2(4Fe-4S) ferredoxin-domain protein [uncultured methanogenic
           archaeon RC-I]
          Length = 370

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 15/85 (17%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
            + RG   L      E+ C+ C  C A+CP  A+ +E                +D   CI
Sbjct: 182 DQHRGLRPLV----DEKGCVGCGRCAAVCPRIAVHMEQDIAV-----------VDDEVCI 226

Query: 105 YCGLCQEACPVDAIVEGPNFEFATE 129
            CG C   CPV +I      +    
Sbjct: 227 GCGECMTVCPVGSISFNWEKDIVPF 251


>gi|88660702|gb|ABD48098.1| periplasmic Fe-hydrogenase large subunit [Shewanella
           decolorationis]
          Length = 410

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 24/64 (37%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              +C  C  C+  CP  AI   SG              ID  KC+ CG C   CP  AI
Sbjct: 18  NASKCKGCDACKQFCPTHAINGASGAAHS----------IDEDKCLSCGQCLINCPFSAI 67

Query: 119 VEGP 122
            E  
Sbjct: 68  EETH 71



 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 98  IDMIKCIYCGLCQEACPVDAIV 119
           I+  KC  C  C++ CP  AI 
Sbjct: 17  INASKCKGCDACKQFCPTHAIN 38


>gi|47094835|ref|ZP_00232449.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria
           monocytogenes str. 1/2a F6854]
 gi|254898999|ref|ZP_05258923.1| hypothetical protein LmonJ_04260 [Listeria monocytogenes J0161]
 gi|254911513|ref|ZP_05261525.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria
           monocytogenes J2818]
 gi|254935839|ref|ZP_05267536.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria
           monocytogenes F6900]
 gi|47016717|gb|EAL07636.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria
           monocytogenes str. 1/2a F6854]
 gi|258608426|gb|EEW21034.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria
           monocytogenes F6900]
 gi|293589456|gb|EFF97790.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria
           monocytogenes J2818]
          Length = 1215

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 34/104 (32%), Gaps = 16/104 (15%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCH 87
              T+   +   AL       E C  C  C  +CP  AI              E      
Sbjct: 669 PPGTAAYEKRGIALEVPEWISENCTMCNECAFVCPHAAIRPILTDEEEMESAPEGFMTRE 728

Query: 88  DGTRRTVRYDID--MIKCIYCGLCQEACP--VDAIVEGPNFEFA 127
              +  +RY I    + C  C LC E CP    A+V  P  E A
Sbjct: 729 MRGKDGLRYRIQVSPMDCTGCNLCAETCPAKEKALVMKPFEEVA 772



 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 5/80 (6%)

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV--EGPNFEFATETRQ 132
           + A    +      G    V   I    C  C  C   CP  AI        E   E+  
Sbjct: 665 SGAYPPGTAAYEKRGIALEVPEWI-SENCTMCNECAFVCPHAAIRPILTDEEEM--ESAP 721

Query: 133 ELYYDKERLLNNGDRWESEI 152
           E +  +E    +G R+  ++
Sbjct: 722 EGFMTREMRGKDGLRYRIQV 741


>gi|332296158|ref|YP_004438081.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermodesulfobium narugense DSM 14796]
 gi|332179261|gb|AEE14950.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermodesulfobium narugense DSM 14796]
          Length = 676

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 7/63 (11%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++C  C +C  +CP  AI+         G ++     ID   C  CG+C  ACP  AI
Sbjct: 605 NPDKCSGCGICLPLCPYSAISW-----KEYGDKKRAH--IDPALCTGCGVCASACPSRAI 657

Query: 119 VEG 121
              
Sbjct: 658 TLH 660



 Score = 37.8 bits (86), Expect = 0.58,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 3/46 (6%)

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
           R  +  ID  KC  CG C EACP         F    + R+ +Y +
Sbjct: 240 RKKQTYIDWDKCTGCGACVEACPGKV---DNEFNENMDKRKAVYIE 282



 Score = 33.5 bits (75), Expect = 9.5,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 3/35 (8%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           +++  KC  CG+C   CP  AI      E+  + R
Sbjct: 603 EVNPDKCSGCGICLPLCPYSAISWK---EYGDKKR 634


>gi|317483797|ref|ZP_07942737.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
 gi|316924900|gb|EFV46046.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
          Length = 419

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 6/53 (11%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
             C  C  CE +CP  AI +E GP             +D  +CI CG+C  +C
Sbjct: 288 NDCRGCGKCEKVCPVNAIHMEDGPAGKRFAF------VDPERCIGCGVCVRSC 334



 Score = 39.3 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 5/36 (13%)

Query: 101 IKCIYCGLCQEACPVDAIVE-----GPNFEFATETR 131
             C  CG C++ CPV+AI       G  F F    R
Sbjct: 288 NDCRGCGKCEKVCPVNAIHMEDGPAGKRFAFVDPER 323


>gi|294678551|ref|YP_003579166.1| NAD-dependent formate dehydrogenase subunit alpha [Rhodobacter
           capsulatus SB 1003]
 gi|294477371|gb|ADE86759.1| NAD-dependent formate dehydrogenase, alpha subunit [Rhodobacter
           capsulatus SB 1003]
          Length = 958

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 28/92 (30%), Gaps = 9/92 (9%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP--AQAITIESG 83
           +F +   T       G        +++   +     +CI C  C   C        +   
Sbjct: 152 HFARRDAT-------GPNPRYIPKDNSNPYFSYDPAKCIVCMRCVRACEEVQGTFALTVM 204

Query: 84  PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
            R  D        D     C+ CG C +ACP 
Sbjct: 205 GRGFDARISPAAPDFLSSDCVSCGACVQACPT 236


>gi|291561240|emb|CBL40039.1| Iron only hydrogenase large subunit, C-terminal domain
           [butyrate-producing bacterium SS3/4]
          Length = 490

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 23/69 (33%), Gaps = 7/69 (10%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-------IDMIKCIYCGLC 109
                 C  C  C   CP  AI     P         +  D       ID  KCI CG C
Sbjct: 125 HIDPSVCKECGRCAQSCPYNAIAELIRPCRRACPVDAITMDPETGICQIDEKKCIQCGAC 184

Query: 110 QEACPVDAI 118
             +CP  AI
Sbjct: 185 VRSCPFGAI 193


>gi|229529443|ref|ZP_04418833.1| iron-sulfur cluster-binding protein [Vibrio cholerae 12129(1)]
 gi|229333217|gb|EEN98703.1| iron-sulfur cluster-binding protein [Vibrio cholerae 12129(1)]
          Length = 553

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 9/75 (12%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             C  C  C A+CP +A+                        C+ CGLC +ACP  A+  
Sbjct: 418 SDCTLCMSCVAVCPTRALHPAGDSPA---------LRFIEQDCVQCGLCVKACPEQALSA 468

Query: 121 GPNFEFATETRQELY 135
            P   +    RQ + 
Sbjct: 469 TPQLNWNKAARQGVV 483



 Score = 40.9 bits (94), Expect = 0.061,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 14/81 (17%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           C+ C   CPA A++ E   +         R  I+   C   G C  ACP +AI     + 
Sbjct: 186 CERCVDACPAGALSSEGSDQTGH------RIQINPYLCQGVGTCATACPTEAIH----YA 235

Query: 126 FA-TETRQELYYDKERLLNNG 145
                  Q+     ERLL N 
Sbjct: 236 LPNPTDTQKFI---ERLLANY 253



 Score = 33.9 bits (76), Expect = 7.5,   Method: Composition-based stats.
 Identities = 6/23 (26%), Positives = 8/23 (34%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIV 119
           +     C  C  C   CP  A+ 
Sbjct: 414 ECQTSDCTLCMSCVAVCPTRALH 436


>gi|90417027|ref|ZP_01224956.1| electron transport complex protein RnfB [marine gamma
           proteobacterium HTCC2207]
 gi|90331374|gb|EAS46618.1| electron transport complex protein RnfB [marine gamma
           proteobacterium HTCC2207]
          Length = 209

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 27/75 (36%), Gaps = 10/75 (13%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
                    E+ CI C  C   CP  AI   +           + + +   +C  C LC 
Sbjct: 110 EVKTVAYIREDECIGCTKCIQACPVDAILGAAK----------LMHTVIADECTGCDLCV 159

Query: 111 EACPVDAIVEGPNFE 125
           E CPVD I   P  E
Sbjct: 160 EPCPVDCIDMLPVAE 174


>gi|28210533|ref|NP_781477.1| dihydropyrimidine dehydrogenase [Clostridium tetani E88]
 gi|28202970|gb|AAO35414.1| oxidoreductase iron-sulfur protein [Clostridium tetani E88]
          Length = 411

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 25/81 (30%), Gaps = 6/81 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +      EE+CI C  C   C         G +  +         ++  K
Sbjct: 324 IPAEELDRGYIVYPNFHEEKCIGCGRCYISCYDG------GHQAIEWNTEERTVKLNKEK 377

Query: 103 CIYCGLCQEACPVDAIVEGPN 123
           C+ C LC   CPV  I  G  
Sbjct: 378 CVGCHLCSNVCPVQCIDYGEI 398


>gi|51244535|ref|YP_064419.1| NADP-reducing hydrogenase, 51 kDa subunit [Desulfotalea
           psychrophila LSv54]
 gi|50875572|emb|CAG35412.1| probable NADP-reducing hydrogenase, 51 kDa subunit [Desulfotalea
           psychrophila LSv54]
          Length = 634

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 10/63 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L  +    E+C  C  C   CP  AI+ E          +   + ID   CI CG+C E 
Sbjct: 567 LISFHIDPEKCTGCTACARACPVSAISGE----------KRQVHQIDQALCIRCGVCLEK 616

Query: 113 CPV 115
           CP 
Sbjct: 617 CPK 619



 Score = 42.0 bits (97), Expect = 0.027,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 16/40 (40%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            I          +  + + ID  KC  C  C  ACPV AI
Sbjct: 553 HIRDKACPACACKDLISFHIDPEKCTGCTACARACPVSAI 592


>gi|317471699|ref|ZP_07931040.1| respiratory-chain NADH dehydrogenase [Anaerostipes sp. 3_2_56FAA]
 gi|316900803|gb|EFV22776.1| respiratory-chain NADH dehydrogenase [Anaerostipes sp. 3_2_56FAA]
          Length = 629

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 32/70 (45%), Gaps = 10/70 (14%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
           +ALRR+    ERC  C  C   CPA AI+           R    Y ID  KCI CG C+
Sbjct: 568 NALRRFIISPERCKGCSKCARNCPADAISG----------RIKEPYVIDNDKCIKCGACE 617

Query: 111 EACPVDAIVE 120
            AC   AI  
Sbjct: 618 SACAFGAIHI 627


>gi|315281501|ref|ZP_07870114.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Listeria marthii
           FSL S4-120]
 gi|313614849|gb|EFR88380.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Listeria marthii
           FSL S4-120]
          Length = 921

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 35/106 (33%), Gaps = 20/106 (18%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI----------------TIESG 83
              T+   +   AL       E C  C  C  +CP  AI                 +   
Sbjct: 374 PPGTAAYEKRGIALEVPEWISENCTMCNECAFVCPHAAIRPILTDEEEMESAPDGFMTRE 433

Query: 84  PRCHDGTRRTVRYDIDMIKCIYCGLCQEACP--VDAIVEGPNFEFA 127
            R  DG R   R  +  + C  C LC E CP    A+V  P  E A
Sbjct: 434 MRGKDGLRY--RIQVSPMDCTGCNLCAETCPAKEKALVMKPFEEVA 477



 Score = 37.0 bits (84), Expect = 0.80,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 5/80 (6%)

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV--EGPNFEFATETRQ 132
           + A    +      G    V   I    C  C  C   CP  AI        E   E+  
Sbjct: 370 SGAYPPGTAAYEKRGIALEVPEWI-SENCTMCNECAFVCPHAAIRPILTDEEEM--ESAP 426

Query: 133 ELYYDKERLLNNGDRWESEI 152
           + +  +E    +G R+  ++
Sbjct: 427 DGFMTREMRGKDGLRYRIQV 446


>gi|291525395|emb|CBK90982.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta
           subunits [Eubacterium rectale DSM 17629]
          Length = 289

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 11/65 (16%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            + CI C +C   C   A+++E G           R  ID  KC  C  C ++CP DA  
Sbjct: 164 HDDCIQCGVCVKACREGALSMEDG-----------RIVIDRDKCNNCARCVKSCPTDAWK 212

Query: 120 EGPNF 124
             P +
Sbjct: 213 GTPGY 217



 Score = 35.1 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 15/45 (33%)

Query: 78  ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                      G +  +  +     CI CG+C +AC   A+    
Sbjct: 142 NNCLKAEENDVGIKGGMTVECSHDDCIQCGVCVKACREGALSMED 186


>gi|289192278|ref|YP_003458219.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
 gi|288938728|gb|ADC69483.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
          Length = 356

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 1/77 (1%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R     R     +++C+ C+ CE +CP  AI +E               +I+  KC+ CG
Sbjct: 102 RYPKIKRDIKIYQDKCVLCEQCEMVCPQGAIEVERDL-PERKKFVIGEININKEKCVLCG 160

Query: 108 LCQEACPVDAIVEGPNF 124
           +C E CP DAI    N+
Sbjct: 161 ICAEYCPADAINLKYNY 177



 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 33/72 (45%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           GE   R     ++ C+ C +C  ICP  AI +        G     + DID   C+ CG+
Sbjct: 19  GEVEKRELTWNDDACVGCGICADICPVSAIAMGPLGAIAKGDIIAPKLDIDKDVCVLCGM 78

Query: 109 CQEACPVDAIVE 120
           C  ACP DA+  
Sbjct: 79  CASACPFDAMDL 90



 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 34/71 (47%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R +  +      +E+C+ C +C   CPA AI ++         +     ++D   C++C 
Sbjct: 141 RKKFVIGEININKEKCVLCGICAEYCPADAINLKYNYPTPTNPKPITDIEVDKDACVFCK 200

Query: 108 LCQEACPVDAI 118
           +C+  CP DAI
Sbjct: 201 VCEFVCPHDAI 211



 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 39/106 (36%), Gaps = 5/106 (4%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT----IESGPRCHDGTRRTVR 95
            G      +G+    +    ++ C+ C +C + CP  A+      +S        +    
Sbjct: 50  MGPLGAIAKGDIIAPKLDIDKDVCVLCGMCASACPFDAMDLKINGKSIKEDERYPKIKRD 109

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNF-EFATETRQELYYDKER 140
             I   KC+ C  C+  CP  AI    +  E       E+  +KE+
Sbjct: 110 IKIYQDKCVLCEQCEMVCPQGAIEVERDLPERKKFVIGEININKEK 155



 Score = 42.0 bits (97), Expect = 0.031,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 8/83 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P         F+GE  +       + C AC  C AICP  A+     P   D   +  R
Sbjct: 254 CPAGAIEVEKPFKGELII-----DVDACNACGACIAICPCSALEF---PAPKDKAEKVPR 305

Query: 96  YDIDMIKCIYCGLCQEACPVDAI 118
             ++   C+ CG C +ACPV+AI
Sbjct: 306 IIVNQNLCVLCGACAKACPVNAI 328



 Score = 39.3 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 8/80 (10%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR--------YDIDMIKCI 104
           +      ++ C+ CK+CE +CP  AI +              +         ++D   C+
Sbjct: 186 ITDIEVDKDACVFCKVCEFVCPHDAIEVICYKCPMMKRIPQAKLYDDIKGKVNVDKDACV 245

Query: 105 YCGLCQEACPVDAIVEGPNF 124
            CG C   CP  AI     F
Sbjct: 246 TCGWCAFICPAGAIEVEKPF 265



 Score = 38.2 bits (87), Expect = 0.41,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 9/86 (10%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
             P  K         +    +    ++ C+ C  C  ICPA AI +E   +         
Sbjct: 217 KCPMMKR-IPQAKLYDDIKGKVNVDKDACVTCGWCAFICPAGAIEVEKPFKGEL------ 269

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVE 120
              ID+  C  CG C   CP  A+  
Sbjct: 270 --IIDVDACNACGACIAICPCSALEF 293


>gi|254491922|ref|ZP_05105101.1| formate dehydrogenase, alpha subunit [Methylophaga thiooxidans
           DMS010]
 gi|224463400|gb|EEF79670.1| formate dehydrogenase, alpha subunit [Methylophaga thiooxydans
           DMS010]
          Length = 932

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 5/78 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114
             + CI C  C   C  +      G     G    + +D    +    C+ CG C EACP
Sbjct: 147 NMDACIQCTRCVRACRDEQNNDVIGLAM-RGNHTEIVFDLDDPMGESSCVACGECVEACP 205

Query: 115 VDAIVEGPNFEFATETRQ 132
             A++   +       ++
Sbjct: 206 TGALMPANDVAMVEPDKK 223


>gi|19548180|gb|AAL90459.1|AF446076_1 [Fe]-hydrogenase [Piromyces sp. E2]
          Length = 555

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 3/68 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPV 115
              +C+ C  C   C         G     G  R        ++  KC+ CG C + CPV
Sbjct: 110 DMNKCVKCGRCVRACHHFQNINILGFINRAGYERVGTPMDRPMNFTKCVECGQCSQVCPV 169

Query: 116 DAIVEGPN 123
            AI E   
Sbjct: 170 GAITERNE 177


>gi|328952767|ref|YP_004370101.1| formate dehydrogenase, alpha subunit [Desulfobacca acetoxidans DSM
           11109]
 gi|328453091|gb|AEB08920.1| formate dehydrogenase, alpha subunit [Desulfobacca acetoxidans DSM
           11109]
          Length = 902

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 30/86 (34%), Gaps = 5/86 (5%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDI 98
              T   F  ++ L        +CI C  C   C   Q              +   + D+
Sbjct: 129 PPDTPYYFEDDNKLI--VRDFSKCIMCGRCVRACNEIQVNRAIQIGYRGSHNKIVAKSDL 186

Query: 99  DM--IKCIYCGLCQEACPVDAIVEGP 122
                 C++CG C +ACPV A+ E  
Sbjct: 187 PYKDSDCVFCGQCVQACPVGALTERK 212


>gi|315651462|ref|ZP_07904485.1| anaerobic sulfite reductase [Eubacterium saburreum DSM 3986]
 gi|315486282|gb|EFU76641.1| anaerobic sulfite reductase [Eubacterium saburreum DSM 3986]
          Length = 323

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 23/82 (28%), Gaps = 8/82 (9%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
                  G   +       +RC+ C+ C   C                     + + +  
Sbjct: 151 KVRMNDFGIMGMTMPQYNPDRCVTCEACVKGC--------KQKSVEALRVVNGKIERNTE 202

Query: 102 KCIYCGLCQEACPVDAIVEGPN 123
           KCI CG+C   CP  A      
Sbjct: 203 KCIGCGVCITVCPTRAWTRSKE 224


>gi|291528500|emb|CBK94086.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta
           subunits [Eubacterium rectale M104/1]
          Length = 289

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 11/65 (16%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            + CI C +C   C   A+++E G           R  ID  KC  C  C ++CP DA  
Sbjct: 164 HDDCIQCGVCVKACREGALSMEDG-----------RIVIDRDKCNNCARCVKSCPTDAWK 212

Query: 120 EGPNF 124
             P +
Sbjct: 213 GTPGY 217



 Score = 35.1 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 15/45 (33%)

Query: 78  ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                      G +  +  +     CI CG+C +AC   A+    
Sbjct: 142 NNCLKAEENDVGIKGGMTVECSHDDCIQCGVCVKACREGALSMED 186


>gi|210623816|ref|ZP_03294065.1| hypothetical protein CLOHIR_02016 [Clostridium hiranonis DSM 13275]
 gi|210153311|gb|EEA84317.1| hypothetical protein CLOHIR_02016 [Clostridium hiranonis DSM 13275]
          Length = 266

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 12/80 (15%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
             K   +  +R  + +   P G   C  C +C  +CP  AI+ E+  +            
Sbjct: 170 ELKPKGNKPYREYNGIPLKPKGSSACNGCGVCATVCPVGAISKENPKKVDK--------- 220

Query: 98  IDMIKCIYCGLCQEACPVDA 117
               KCI C  C +ACP +A
Sbjct: 221 ---SKCISCMRCIKACPSNA 237



 Score = 34.7 bits (78), Expect = 3.9,   Method: Composition-based stats.
 Identities = 9/16 (56%), Positives = 10/16 (62%)

Query: 103 CIYCGLCQEACPVDAI 118
           C  CG+C   CPV AI
Sbjct: 195 CNGCGVCATVCPVGAI 210


>gi|167835950|ref|ZP_02462833.1| ferredoxin [Burkholderia thailandensis MSMB43]
          Length = 170

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 27/81 (33%), Gaps = 10/81 (12%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
             +P    E A       E+ CI C LC   CP  AI                 + I   
Sbjct: 66  PLNPEHGVERARPVAFIDEQLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVAE 115

Query: 102 KCIYCGLCQEACPVDAIVEGP 122
            C  C LC   CPVD I   P
Sbjct: 116 LCTGCDLCVPPCPVDCIAMIP 136


>gi|121605833|ref|YP_983162.1| FAD/NAD(P)-binding oxidoreductase subunit [Polaromonas
           naphthalenivorans CJ2]
 gi|120594802|gb|ABM38241.1| benzoyl-CoA oxygenase, component A [Polaromonas naphthalenivorans
           CJ2]
          Length = 427

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 11/68 (16%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
           H ++++    E CI C  CEAICP  AIT +S             Y +D  KC +C  C 
Sbjct: 7   HVIKQHLIDPEICIRCNTCEAICPVSAITHDS-----------RNYVVDAEKCNFCMACI 55

Query: 111 EACPVDAI 118
             CP  +I
Sbjct: 56  SPCPTGSI 63



 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
               ++ ID   CI C  C+  CPV AI  
Sbjct: 7   HVIKQHLIDPEICIRCNTCEAICPVSAITH 36


>gi|310777828|ref|YP_003966161.1| electron transport complex, RnfABCDGE type, B subunit [Ilyobacter
           polytropus DSM 2926]
 gi|309747151|gb|ADO81813.1| electron transport complex, RnfABCDGE type, B subunit [Ilyobacter
           polytropus DSM 2926]
          Length = 334

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 27/60 (45%), Gaps = 8/60 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E+CI C LC   CP  AIT E             + +I   KCI C  C   CPVDAI
Sbjct: 243 DPEKCIQCGLCAIKCPTNAITSEVKE--------IKKAEIIEEKCIGCTACARVCPVDAI 294



 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 31/89 (34%), Gaps = 11/89 (12%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
            +     P  +  T      E       N    CI C +C   CP  AI + +       
Sbjct: 185 KRVISMTPQSQKVTVLCSSREKGAVARKNCSVACIGCGVCVRACPVDAIDLNNNLA---- 240

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                   ID  KCI CGLC   CP +AI
Sbjct: 241 -------KIDPEKCIQCGLCAIKCPTNAI 262



 Score = 41.2 bits (95), Expect = 0.045,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 5/70 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQEAC 113
            E++C++C+ C   CP + I++    +          +  V      + CI CG+C  AC
Sbjct: 169 NEDKCVSCEKCVKECPKRVISMTPQSQKVTVLCSSREKGAVARKNCSVACIGCGVCVRAC 228

Query: 114 PVDAIVEGPN 123
           PVDAI    N
Sbjct: 229 PVDAIDLNNN 238



 Score = 40.5 bits (93), Expect = 0.088,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 10/81 (12%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           K  T+        +++    EE+CI C  C  +CP  AI  E             ++ + 
Sbjct: 256 KCPTNAITSEVKEIKKAEIIEEKCIGCTACARVCPVDAIEGE----------VKQKHKVI 305

Query: 100 MIKCIYCGLCQEACPVDAIVE 120
             KCI C LC E C   AI  
Sbjct: 306 EEKCIGCQLCYEKCKFGAIKI 326



 Score = 39.7 bits (91), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 24/74 (32%), Gaps = 10/74 (13%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
                   +    C+    C A+CP  AITI                 I+  KC+ C  C
Sbjct: 130 MLYFGGDKSCWHSCLGYGDCAAVCPVDAITITDKGVAV----------INEDKCVSCEKC 179

Query: 110 QEACPVDAIVEGPN 123
            + CP   I   P 
Sbjct: 180 VKECPKRVISMTPQ 193


>gi|168184520|ref|ZP_02619184.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum Bf]
 gi|237795252|ref|YP_002862804.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum Ba4 str. 657]
 gi|182672370|gb|EDT84331.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum Bf]
 gi|229262705|gb|ACQ53738.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum Ba4 str. 657]
          Length = 631

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 10/63 (15%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           +    ++CI C  C   CP   I            +   ++ I+  KCI CG C  ACPV
Sbjct: 576 HYEITDKCIGCTKCARGCPVSCIIG----------KVKEKHFINQEKCIKCGNCYSACPV 625

Query: 116 DAI 118
            AI
Sbjct: 626 GAI 628



 Score = 37.8 bits (86), Expect = 0.48,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 17/39 (43%)

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +  RC  GT + + +     KCI C  C   CPV  I
Sbjct: 560 HVNEKRCPSGTCKNLLHYEITDKCIGCTKCARGCPVSCI 598


>gi|254286422|ref|ZP_04961380.1| iron-sulfur cluster-binding protein [Vibrio cholerae AM-19226]
 gi|150423589|gb|EDN15532.1| iron-sulfur cluster-binding protein [Vibrio cholerae AM-19226]
          Length = 553

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 9/75 (12%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             C  C  C A+CP +A+                        C+ CGLC +ACP  A+  
Sbjct: 418 SDCTLCMSCVAVCPTRALHPAGDSPA---------LRFIEQDCVQCGLCVKACPEQALSA 468

Query: 121 GPNFEFATETRQELY 135
            P   +    RQ + 
Sbjct: 469 TPQLNWNKAARQGVV 483



 Score = 41.6 bits (96), Expect = 0.036,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 14/81 (17%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           C+ C   CPA A++ E   +         R  I+   C   G C  ACP +AI     + 
Sbjct: 186 CERCVDACPAGALSSEGSEQTGH------RIQINPYLCQGVGTCATACPTEAIH----YA 235

Query: 126 FA-TETRQELYYDKERLLNNG 145
                  Q+     ERLL N 
Sbjct: 236 LPNPTDTQKFI---ERLLANY 253



 Score = 33.9 bits (76), Expect = 7.6,   Method: Composition-based stats.
 Identities = 6/23 (26%), Positives = 8/23 (34%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIV 119
           +     C  C  C   CP  A+ 
Sbjct: 414 ECQTSDCTLCMSCVAVCPTRALH 436


>gi|153214796|ref|ZP_01949625.1| iron-sulfur cluster-binding protein [Vibrio cholerae 1587]
 gi|124115138|gb|EAY33958.1| iron-sulfur cluster-binding protein [Vibrio cholerae 1587]
          Length = 553

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 9/75 (12%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             C  C  C A+CP +A+                        C+ CGLC +ACP  A+  
Sbjct: 418 SDCTLCMSCVAVCPTRALHPAGDSPA---------LRFIEQDCVQCGLCVKACPEQALSA 468

Query: 121 GPNFEFATETRQELY 135
            P   +    RQ + 
Sbjct: 469 TPQLNWNKAARQGVV 483



 Score = 40.9 bits (94), Expect = 0.061,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 14/81 (17%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           C+ C   CPA A++ E   +         R  I+   C   G C  ACP +AI     + 
Sbjct: 186 CERCVDACPAGALSSEGTDQTGH------RIQINPYLCQGVGTCATACPTEAIH----YA 235

Query: 126 FA-TETRQELYYDKERLLNNG 145
                  Q+     ERLL N 
Sbjct: 236 LPNPTDTQKFI---ERLLANY 253



 Score = 33.9 bits (76), Expect = 7.9,   Method: Composition-based stats.
 Identities = 6/23 (26%), Positives = 8/23 (34%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIV 119
           +     C  C  C   CP  A+ 
Sbjct: 414 ECQASDCTLCMSCVAVCPTRALH 436


>gi|134046740|ref|YP_001098225.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C5]
 gi|132664365|gb|ABO36011.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methanococcus maripaludis C5]
          Length = 395

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 1/75 (1%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E+C  C  C   CP  AI + +       +++      +   CI CG C   CP  A+  
Sbjct: 266 EKCAYCGPCAIKCPTGAIKVVNPKGLELPSKKKTEKANEFAMCIRCGACAMKCPTGALKM 325

Query: 121 GP-NFEFATETRQEL 134
           G    E    TR E 
Sbjct: 326 GNVVHEGKEYTRVEF 340



 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++CI C +C   CP  AI   +G       +    + ++  +CI C  C E CP   I
Sbjct: 156 DTDKCIYCTVCSQTCPWNAIF-VAGKVPQKRQKTIKSFTVNEEECIGCEKCVEVCPGSMI 214



 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 22/66 (33%), Gaps = 3/66 (4%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           N    CI C  C   CP  A+ +          +   R +     C  CG C + CP   
Sbjct: 303 NEFAMCIRCGACAMKCPTGALKM---GNVVHEGKEYTRVEFSPALCNECGECVDVCPQKT 359

Query: 118 IVEGPN 123
           +    +
Sbjct: 360 LELTGD 365



 Score = 39.3 bits (90), Expect = 0.16,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK-CIYCGLCQEACP 114
           +P  +  C+ C+ C  ICPA+ I++              +  I + K C+ CG+C   CP
Sbjct: 84  FPYSKGHCVLCEKCVDICPAEIISLPGKVEKPKKEVVIPQEPIAVTKECVACGVCVPECP 143

Query: 115 VDAIVEGPN 123
           VDAI     
Sbjct: 144 VDAISLEDI 152



 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 12/59 (20%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           + C+AC +C   CP  AI++E                ID  KCIYC +C + CP +AI 
Sbjct: 130 KECVACGVCVPECPVDAISLEDIAV------------IDTDKCIYCTVCSQTCPWNAIF 176



 Score = 35.1 bits (79), Expect = 3.1,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 26/75 (34%), Gaps = 1/75 (1%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103
                  +A     N    C AC LC   CP + I++E                +   KC
Sbjct: 210 PGSMIEYNAKDLGVNLPLACPACGLCVESCPVEVISLEVEYASAKPVTDEGLVWL-EEKC 268

Query: 104 IYCGLCQEACPVDAI 118
            YCG C   CP  AI
Sbjct: 269 AYCGPCAIKCPTGAI 283



 Score = 33.9 bits (76), Expect = 6.9,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 17/78 (21%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDG-----------------TRRTVRYDIDMIK 102
            + CI C  C   CP  A+ ++ G    +G                  +   R+      
Sbjct: 31  FKTCIQCFSCANACPTGALVVKDGKLVFNGSKCDLDGACAKACPQGIKKVDDRFPYSKGH 90

Query: 103 CIYCGLCQEACPVDAIVE 120
           C+ C  C + CP + I  
Sbjct: 91  CVLCEKCVDICPAEIISL 108


>gi|57640071|ref|YP_182549.1| indolepyruvate: ferredoxin oxidoreductase, alpha subunit
           [Thermococcus kodakarensis KOD1]
 gi|62296914|sp|O07835|IORA_PYRKO RecName: Full=Indolepyruvate oxidoreductase subunit iorA;
           Short=IOR; AltName: Full=Indolepyruvate ferredoxin
           oxidoreductase subunit alpha
 gi|57158395|dbj|BAD84325.1| indolepyruvate: ferredoxin oxidoreductase, alpha subunit
           [Thermococcus kodakarensis KOD1]
          Length = 647

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 26/78 (33%), Gaps = 9/78 (11%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R       Y   E++C  CK+C       AI  +   +            +D   C  CG
Sbjct: 579 RRGMKWPIYHVVEDKCTGCKICINAYGCPAIYWDPETKKA---------KVDPTMCWGCG 629

Query: 108 LCQEACPVDAIVEGPNFE 125
            C + CP DA       E
Sbjct: 630 GCAQVCPFDAFEPMKEGE 647


>gi|54295706|ref|YP_128121.1| hypothetical protein lpl2794 [Legionella pneumophila str. Lens]
 gi|53755538|emb|CAH17037.1| hypothetical protein lpl2794 [Legionella pneumophila str. Lens]
          Length = 204

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 13/93 (13%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C   CP  AI   S           + + I   +C  CGLC + CPVD I  
Sbjct: 82  DECIGCTKCIKACPVDAIIGSSK----------LMHAIITHECTGCGLCVDPCPVDCIEM 131

Query: 121 GPNFEFATETRQ--ELYYDKERLLNNGDRWESE 151
                 A   +      Y+ +++    D  E +
Sbjct: 132 VS-LSAAGYDKDLARQRYNAKQMRQLRDEHEKQ 163



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 17/35 (48%)

Query: 84  PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               D TR      I   +CI C  C +ACPVDAI
Sbjct: 65  KEAIDNTRPPSVAAIKEDECIGCTKCIKACPVDAI 99


>gi|54302327|ref|YP_132320.1| hypothetical protein PBPRB0647 [Photobacterium profundum SS9]
 gi|46915749|emb|CAG22520.1| hypothetical protein PBPRB0647 [Photobacterium profundum SS9]
          Length = 210

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 38/119 (31%), Gaps = 11/119 (9%)

Query: 12  FLKEFVGAFFLC--------LRYFFKAKTTINYPFEKGST-SPRFRGEHALRRYPNGEER 62
           FL     + +L         +      +        K      + R   AL      ++ 
Sbjct: 11  FLYRIFKSLWLTAIAAVPYGIGRMLMPEKNQLASLNKSQLNHDKLRPPGALNDDIAFQKA 70

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           CI C LC  +CP   I        ++     +   +    CI CG C E CP +A+   
Sbjct: 71  CIGCSLCAEVCPPACIQFYHLDGANNANTPYIEPALRA--CILCGKCMEVCPTNALTVT 127



 Score = 37.8 bits (86), Expect = 0.48,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 9/73 (12%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVR--YDIDMIKCIYCGLCQEACP--VDAI 118
           CI C  C  +CP  A+T+    + + G  +  R      + + I CG C   CP    AI
Sbjct: 109 CILCGKCMEVCPTNALTVTETRKVNMGRAQIERLACYPWVDRGI-CGACVSICPLGETAI 167

Query: 119 VEGPNFEFATETR 131
                FEFA   R
Sbjct: 168 S----FEFANMYR 176


>gi|150389275|ref|YP_001319324.1| cobyrinic acid a,c-diamide synthase [Alkaliphilus metalliredigens
           QYMF]
 gi|149949137|gb|ABR47665.1| Cobyrinic acid a,c-diamide synthase [Alkaliphilus metalliredigens
           QYMF]
          Length = 286

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 34/91 (37%), Gaps = 18/91 (19%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
              + +     + C+ C LC   C   AI  + G            Y +D   C  CG+C
Sbjct: 56  YFGMPKAEINSQICVQCDLCRENCRFDAINFDDG------------YHVDPFVCEGCGVC 103

Query: 110 QEACPVDAIVEGPNFEFATETRQELYYDKER 140
           +E CPV A+   P      E   +L   KE 
Sbjct: 104 EELCPVGAVSLKP------EKAGDLMLYKED 128



 Score = 33.9 bits (76), Expect = 7.5,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 18/46 (39%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
             +S            + +I+   C+ C LC+E C  DAI     +
Sbjct: 45  MHQSAKAIESDYFGMPKAEINSQICVQCDLCRENCRFDAINFDDGY 90


>gi|121726918|ref|ZP_01680119.1| iron-sulfur cluster-binding protein [Vibrio cholerae V52]
 gi|147673441|ref|YP_001217069.1| iron-sulfur cluster-binding protein [Vibrio cholerae O395]
 gi|262169548|ref|ZP_06037239.1| iron-sulfur cluster-binding protein [Vibrio cholerae RC27]
 gi|121630680|gb|EAX63067.1| iron-sulfur cluster-binding protein [Vibrio cholerae V52]
 gi|146315324|gb|ABQ19863.1| iron-sulfur cluster-binding protein [Vibrio cholerae O395]
 gi|227013430|gb|ACP09640.1| iron-sulfur cluster-binding protein [Vibrio cholerae O395]
 gi|262021782|gb|EEY40492.1| iron-sulfur cluster-binding protein [Vibrio cholerae RC27]
          Length = 553

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 9/75 (12%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             C  C  C A+CP +A+                        C+ CGLC +ACP  A+  
Sbjct: 418 SDCTLCMSCVAVCPTRALHPAGDSPA---------LRFIEQDCVQCGLCVKACPEQALSA 468

Query: 121 GPNFEFATETRQELY 135
            P   +    RQ + 
Sbjct: 469 TPQLNWNKAARQGVV 483



 Score = 41.6 bits (96), Expect = 0.036,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 14/81 (17%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           C+ C   CPA A++ E   +         R  I+   C   G C  ACP +AI     + 
Sbjct: 186 CERCVDACPAGALSSEGSEQTGH------RIQINPYLCQGVGTCATACPTEAIH----YA 235

Query: 126 FA-TETRQELYYDKERLLNNG 145
                  Q+     ERLL N 
Sbjct: 236 LPNPTDTQKFI---ERLLANY 253



 Score = 33.9 bits (76), Expect = 7.9,   Method: Composition-based stats.
 Identities = 6/23 (26%), Positives = 8/23 (34%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIV 119
           +     C  C  C   CP  A+ 
Sbjct: 414 ECQASDCTLCMSCVAVCPTRALH 436


>gi|332343347|gb|AEE56681.1| electron transport complex RnfC [Escherichia coli UMNK88]
          Length = 708

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|332097845|gb|EGJ02818.1| electron transport complex protein rnfC [Shigella dysenteriae
           155-74]
          Length = 708

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|332096012|gb|EGJ01017.1| electron transport complex protein rnfC [Shigella boydii 3594-74]
          Length = 716

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 347 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 404

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 405 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 453


>gi|332091211|gb|EGI96300.1| electron transport complex protein rnfC [Shigella boydii 5216-82]
          Length = 740

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|331677494|ref|ZP_08378169.1| electron transport complex protein RnfC [Escherichia coli H591]
 gi|331073954|gb|EGI45274.1| electron transport complex protein RnfC [Escherichia coli H591]
          Length = 544

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 294 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 351

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 352 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 400


>gi|330911436|gb|EGH39946.1| electron transport complex protein RnfC [Escherichia coli AA86]
          Length = 709

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|330445943|ref|ZP_08309595.1| 4Fe-4S binding domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328490134|dbj|GAA04092.1| 4Fe-4S binding domain protein [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 551

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 9/76 (11%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
              + C  C  C A+CP +A+                        C+ CG+C++ACP   
Sbjct: 414 CETKDCTLCMSCVAVCPTRALHAIGDRPGLL---------FIEEDCVQCGMCEKACPEKV 464

Query: 118 IVEGPNFEFATETRQE 133
           I   P F +  + R+E
Sbjct: 465 ISLEPRFNWDWQARKE 480



 Score = 34.3 bits (77), Expect = 6.0,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTV--RYDIDMIKCIYCG 107
           E C+ C +CE  CP + I++E         R+     ++     CI CG
Sbjct: 448 EDCVQCGMCEKACPEKVISLEPRFNWDWQARKEAKLVHEEPAACCISCG 496



 Score = 33.9 bits (76), Expect = 7.8,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 11/53 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C   CPA A++ +                ID   C   G C  ACP +AI
Sbjct: 190 CDRCLEACPAGALSSDGVEIA-----------IDPYLCQGVGTCATACPTEAI 231


>gi|324119385|gb|EGC13272.1| electron transporter [Escherichia coli E1167]
          Length = 655

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|324006984|gb|EGB76203.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 57-2]
          Length = 808

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|323978231|gb|EGB73317.1| electron transporter [Escherichia coli TW10509]
          Length = 740

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|323973845|gb|EGB69018.1| electron transporter [Escherichia coli TA007]
          Length = 623

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|323962199|gb|EGB57793.1| electron transporter [Escherichia coli H489]
          Length = 659

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|323937424|gb|EGB33702.1| electron transporter [Escherichia coli E1520]
          Length = 631

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|323187054|gb|EFZ72370.1| electron transport complex protein rnfC [Escherichia coli RN587/1]
          Length = 773

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|323186099|gb|EFZ71455.1| electron transport complex protein rnfC [Escherichia coli 1357]
          Length = 708

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|323169935|gb|EFZ55591.1| electron transport complex protein rnfC [Escherichia coli LT-68]
          Length = 684

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 347 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 404

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 405 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 453


>gi|323169187|gb|EFZ54863.1| electron transport complex protein rnfC [Shigella sonnei 53G]
          Length = 708

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|320195473|gb|EFW70098.1| Electron transport complex protein RnfC [Escherichia coli
           WV_060327]
          Length = 740

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|320181352|gb|EFW56271.1| Electron transport complex protein RnfC [Shigella boydii ATCC 9905]
          Length = 708

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|318041122|ref|ZP_07973078.1| bidirectional hydrogenase complex protein HoxU [Synechococcus sp.
           CB0101]
          Length = 238

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 4/73 (5%)

Query: 55  RYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDIDMI--KCIYCGLCQ 110
           +Y     RCI C  C  +C     A   + G R       +   +       C +CG C 
Sbjct: 140 QYGLDHNRCILCTRCVRVCDEVEGAHVWDVGWRGEHCQIISGLGEPWGDVNACTHCGKCV 199

Query: 111 EACPVDAIVEGPN 123
           E CP  A+    +
Sbjct: 200 EVCPTGALFHKTD 212


>gi|315060936|gb|ADT75263.1| electron transport complex protein RnfC [Escherichia coli W]
 gi|323378493|gb|ADX50761.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli KO11]
          Length = 740

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|309793394|ref|ZP_07687821.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 145-7]
 gi|308122981|gb|EFO60243.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 145-7]
          Length = 772

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|306813407|ref|ZP_07447597.1| electron transport complex protein RnfC [Escherichia coli NC101]
 gi|305853152|gb|EFM53592.1| electron transport complex protein RnfC [Escherichia coli NC101]
          Length = 740

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|302343661|ref|YP_003808190.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfarculus
           baarsii DSM 2075]
 gi|301640274|gb|ADK85596.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfarculus
           baarsii DSM 2075]
          Length = 332

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 8/62 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E C  C LC   C   AI+   G              +D  KC+ CGLC   CP +AI
Sbjct: 266 DPEACTGCGLCHERCYFGAISWSEGEGSAS--------QVDAEKCLGCGLCMVTCPAEAI 317

Query: 119 VE 120
             
Sbjct: 318 DL 319



 Score = 35.1 bits (79), Expect = 3.1,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 13/28 (46%)

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            R +ID   C  CGLC E C   AI   
Sbjct: 261 FRAEIDPEACTGCGLCHERCYFGAISWS 288


>gi|300819310|ref|ZP_07099509.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 107-1]
 gi|300528081|gb|EFK49143.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 107-1]
          Length = 676

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|300821500|ref|ZP_07101647.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 119-7]
 gi|300526003|gb|EFK47072.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 119-7]
          Length = 640

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|293446004|ref|ZP_06662426.1| electron transport complex protein RnfC [Escherichia coli B088]
 gi|291322834|gb|EFE62262.1| electron transport complex protein RnfC [Escherichia coli B088]
          Length = 662

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|291282761|ref|YP_003499579.1| Electron transport complex protein RnfC [Escherichia coli O55:H7
           str. CB9615]
 gi|290762634|gb|ADD56595.1| Electron transport complex protein RnfC [Escherichia coli O55:H7
           str. CB9615]
 gi|320647300|gb|EFX16108.1| electron transport complex protein RnfC [Escherichia coli O157:H-
           str. 493-89]
 gi|320652594|gb|EFX20863.1| electron transport complex protein RnfC [Escherichia coli O157:H-
           str. H 2687]
 gi|320668653|gb|EFX35458.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. LSU-61]
          Length = 772

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|282162803|ref|YP_003355188.1| putative ferredoxin [Methanocella paludicola SANAE]
 gi|282155117|dbj|BAI60205.1| putative ferredoxin [Methanocella paludicola SANAE]
          Length = 129

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 10/65 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            EE C+ C  C A+CP  AI  E             R  +D   C+ CG C  ACPV  I
Sbjct: 75  DEENCVHCGACVAVCPVGAIAFE----------YDWRVRMDEKACVQCGNCVTACPVKVI 124

Query: 119 VEGPN 123
               N
Sbjct: 125 RLSDN 129



 Score = 35.5 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNF 124
              C++CG C   CPV AI    ++
Sbjct: 76  EENCVHCGACVAVCPVGAIAFEYDW 100


>gi|253773413|ref|YP_003036244.1| electron transport complex protein RnfC [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253324457|gb|ACT29059.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli 'BL21-Gold(DE3)pLysS AG']
          Length = 708

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|238923284|ref|YP_002936799.1| sulfite reductase, beta subunit [Eubacterium rectale ATCC 33656]
 gi|238874958|gb|ACR74665.1| sulfite reductase, beta subunit [Eubacterium rectale ATCC 33656]
          Length = 289

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 11/65 (16%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            + CI C +C   C   A+++E G           R  ID  KC  C  C ++CP DA  
Sbjct: 164 HDDCIQCGVCVKACREGALSMEDG-----------RIVIDRDKCNNCARCVKSCPTDAWK 212

Query: 120 EGPNF 124
             P +
Sbjct: 213 GTPGY 217



 Score = 35.1 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 15/45 (33%)

Query: 78  ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                      G +  +  +     CI CG+C +AC   A+    
Sbjct: 142 NNCLKAEENDVGIKGGMTVECSHDDCIQCGVCVKACREGALSMED 186


>gi|222033388|emb|CAP76129.1| electron transport complex protein rnfC [Escherichia coli LF82]
 gi|312946229|gb|ADR27056.1| electron transport complex protein RnfC [Escherichia coli O83:H1
           str. NRG 857C]
          Length = 775

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|218705130|ref|YP_002412649.1| electron transport complex protein RnfC [Escherichia coli UMN026]
 gi|300901564|ref|ZP_07119633.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 198-1]
 gi|226735442|sp|B7NB83|RNFC_ECOLU RecName: Full=Electron transport complex protein rnfC
 gi|218432227|emb|CAR13117.1| putative 4Fe-4S ferredoxin-type protein fused with unknown protein
           [Escherichia coli UMN026]
 gi|300355031|gb|EFJ70901.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 198-1]
          Length = 740

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|218699803|ref|YP_002407432.1| electron transport complex protein RnfC [Escherichia coli IAI39]
 gi|226735439|sp|B7NU04|RNFC_ECO7I RecName: Full=Electron transport complex protein rnfC
 gi|218369789|emb|CAR17560.1| putative 4Fe-4S ferredoxin-type protein fused with unknown protein
           [Escherichia coli IAI39]
          Length = 740

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|218554197|ref|YP_002387110.1| electron transport complex protein RnfC [Escherichia coli IAI1]
 gi|218695192|ref|YP_002402859.1| electron transport complex protein RnfC [Escherichia coli 55989]
 gi|226735440|sp|B7M0I6|RNFC_ECO8A RecName: Full=Electron transport complex protein rnfC
 gi|254807930|sp|B7L5I2|RNFC_ECO55 RecName: Full=Electron transport complex protein rnfC
 gi|218351924|emb|CAU97649.1| putative 4Fe-4S ferredoxin-type protein fused with unknown protein
           [Escherichia coli 55989]
 gi|218360965|emb|CAQ98538.1| putative 4Fe-4S ferredoxin-type protein fused with unknown protein
           [Escherichia coli IAI1]
 gi|323152867|gb|EFZ39137.1| electron transport complex protein rnfC [Escherichia coli EPECa14]
          Length = 708

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|215486806|ref|YP_002329237.1| electron transport complex protein RnfC [Escherichia coli O127:H6
           str. E2348/69]
 gi|312966607|ref|ZP_07780827.1| electron transport complex protein rnfC [Escherichia coli 2362-75]
 gi|254807929|sp|B7URX0|RNFC_ECO27 RecName: Full=Electron transport complex protein rnfC
 gi|215264878|emb|CAS09264.1| fused predicted 4Fe-4S ferredoxin-type protein/conserved protein
           [Escherichia coli O127:H6 str. E2348/69]
 gi|312288717|gb|EFR16617.1| electron transport complex protein rnfC [Escherichia coli 2362-75]
          Length = 741

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|212637025|ref|YP_002313550.1| formate dehydrogenase subunit alpha [Shewanella piezotolerans WP3]
 gi|212558509|gb|ACJ30963.1| Formate dehydrogenase, alpha subunit [Shewanella piezotolerans WP3]
          Length = 1392

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 14/79 (17%)

Query: 59  GEERCIACKLCEAIC--------------PAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
              RCI+C  C   C                QA+         +  R      ++   C+
Sbjct: 642 DANRCISCGACVETCKGASGHNAICFEKDHYQALPSTDNTAKRNAPRVGFSASMNDSDCV 701

Query: 105 YCGLCQEACPVDAIVEGPN 123
            CG C + CP  A+V+  +
Sbjct: 702 QCGNCVQVCPTGALVDSRD 720


>gi|209918942|ref|YP_002293026.1| electron transport complex protein RnfC [Escherichia coli SE11]
 gi|226735443|sp|B6IB67|RNFC_ECOSE RecName: Full=Electron transport complex protein rnfC
 gi|209912201|dbj|BAG77275.1| putative transport protein [Escherichia coli SE11]
          Length = 740

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|170768759|ref|ZP_02903212.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           albertii TW07627]
 gi|170122307|gb|EDS91238.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           albertii TW07627]
          Length = 740

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|168750557|ref|ZP_02775579.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4113]
 gi|168757455|ref|ZP_02782462.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4401]
 gi|168771171|ref|ZP_02796178.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4486]
 gi|168775859|ref|ZP_02800866.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4196]
 gi|168783452|ref|ZP_02808459.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4076]
 gi|168789466|ref|ZP_02814473.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC869]
 gi|168800889|ref|ZP_02825896.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC508]
 gi|195939018|ref|ZP_03084400.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4024]
 gi|208810265|ref|ZP_03252141.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4206]
 gi|208821817|ref|ZP_03262137.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4042]
 gi|209399637|ref|YP_002270699.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4115]
 gi|254793246|ref|YP_003078083.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. TW14359]
 gi|261227926|ref|ZP_05942207.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|226735438|sp|B5Z463|RNFC_ECO5E RecName: Full=Electron transport complex protein rnfC
 gi|187768715|gb|EDU32559.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4196]
 gi|188015238|gb|EDU53360.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4113]
 gi|188999240|gb|EDU68226.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4076]
 gi|189355522|gb|EDU73941.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4401]
 gi|189359999|gb|EDU78418.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4486]
 gi|189370921|gb|EDU89337.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC869]
 gi|189376869|gb|EDU95285.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC508]
 gi|208724781|gb|EDZ74488.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4206]
 gi|208741940|gb|EDZ89622.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4042]
 gi|209161037|gb|ACI38470.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4115]
 gi|254592646|gb|ACT72007.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Escherichia coli O157:H7 str. TW14359]
 gi|326343546|gb|EGD67308.1| Electron transport complex protein RnfC [Escherichia coli O157:H7
           str. 1125]
          Length = 772

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|208816704|ref|ZP_03257824.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4045]
 gi|208731047|gb|EDZ79736.1| electron transport complex protein RnfC [Escherichia coli O157:H7
           str. EC4045]
          Length = 708

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|145591908|ref|YP_001153910.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Pyrobaculum arsenaticum DSM 13514]
 gi|145283676|gb|ABP51258.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Pyrobaculum arsenaticum DSM 13514]
          Length = 82

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 10/63 (15%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ++CI C LC   C          P       R  +  ID   C  CG+C + CPV AI  
Sbjct: 28  DKCIDCGLCWLYC----------PESVIDWERGHKVTIDYTYCKGCGICADVCPVKAINM 77

Query: 121 GPN 123
            P 
Sbjct: 78  IPE 80


>gi|170020019|ref|YP_001724973.1| electron transport complex protein RnfC [Escherichia coli ATCC
           8739]
 gi|312969650|ref|ZP_07783833.1| electron transport complex protein rnfC [Escherichia coli 1827-70]
 gi|189043391|sp|B1IQC5|RNFC_ECOLC RecName: Full=Electron transport complex protein rnfC
 gi|169754947|gb|ACA77646.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli ATCC 8739]
 gi|310337935|gb|EFQ03024.1| electron transport complex protein rnfC [Escherichia coli 1827-70]
          Length = 740

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|110680292|ref|YP_683299.1| dihydropyrimidine dehydrogenase [Roseobacter denitrificans OCh 114]
 gi|109456408|gb|ABG32613.1| dihydroorotate dehydrogenase family protein, putative [Roseobacter
           denitrificans OCh 114]
          Length = 434

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 8/95 (8%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    +  CI+C  C A C       E              + +   +C+ 
Sbjct: 330 QYLNLNYVAKAQINQADCISCGRCYAAC-------EDTSHQAIAMSEDRVFSVIDEECVA 382

Query: 106 CGLCQEACPV-DAIVEGPNFEFATETRQELYYDKE 139
           C LC E CPV + I   P  +   + R     +K+
Sbjct: 383 CNLCVEVCPVENCITMVPMEQGKVDPRTGKVVEKD 417


>gi|91210842|ref|YP_540828.1| electron transport complex protein RnfC [Escherichia coli UTI89]
 gi|218558500|ref|YP_002391413.1| electron transport complex protein RnfC [Escherichia coli S88]
 gi|218689576|ref|YP_002397788.1| electron transport complex protein RnfC [Escherichia coli ED1a]
 gi|123387945|sp|Q1RBG7|RNFC_ECOUT RecName: Full=Electron transport complex protein rnfC
 gi|226735437|sp|B7M9Y3|RNFC_ECO45 RecName: Full=Electron transport complex protein rnfC
 gi|254807931|sp|B7MVA7|RNFC_ECO81 RecName: Full=Electron transport complex protein rnfC
 gi|91072416|gb|ABE07297.1| electron transport complex protein RnfC [Escherichia coli UTI89]
 gi|218365269|emb|CAR02990.1| putative 4Fe-4S ferredoxin-type protein fused with unknown protein
           [Escherichia coli S88]
 gi|218427140|emb|CAR08023.2| putative 4Fe-4S ferredoxin-type protein fused with unknown protein
           [Escherichia coli ED1a]
 gi|294490842|gb|ADE89598.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli IHE3034]
 gi|307626885|gb|ADN71189.1| electron transport complex protein RnfC [Escherichia coli UM146]
          Length = 708

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|82777103|ref|YP_403452.1| electron transport complex protein RnfC [Shigella dysenteriae
           Sd197]
 gi|309788404|ref|ZP_07683008.1| electron transport complex protein rnfC [Shigella dysenteriae 1617]
 gi|123742129|sp|Q32FE4|RNFC_SHIDS RecName: Full=Electron transport complex protein rnfC
 gi|81241251|gb|ABB61961.1| putative membrane protein [Shigella dysenteriae Sd197]
 gi|308923786|gb|EFP69289.1| electron transport complex protein rnfC [Shigella dysenteriae 1617]
          Length = 772

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|82544003|ref|YP_407950.1| electron transport complex protein RnfC [Shigella boydii Sb227]
 gi|123741996|sp|Q320Y6|RNFC_SHIBS RecName: Full=Electron transport complex protein rnfC
 gi|81245414|gb|ABB66122.1| putative membrane protein [Shigella boydii Sb227]
 gi|320186301|gb|EFW61037.1| Electron transport complex protein RnfC [Shigella flexneri CDC
           796-83]
          Length = 740

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|74312044|ref|YP_310463.1| electron transport complex protein RnfC [Shigella sonnei Ss046]
 gi|123759605|sp|Q3Z1Y4|RNFC_SHISS RecName: Full=Electron transport complex protein rnfC
 gi|73855521|gb|AAZ88228.1| putative membrane protein [Shigella sonnei Ss046]
          Length = 740

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|26247876|ref|NP_753916.1| electron transport complex protein RnfC [Escherichia coli CFT073]
 gi|81748475|sp|Q8FH95|RNFC_ECOL6 RecName: Full=Electron transport complex protein rnfC
 gi|26108279|gb|AAN80481.1|AE016761_56 Electron transport complex protein rnfC [Escherichia coli CFT073]
 gi|307553652|gb|ADN46427.1| electron transport complex protein RnfC [Escherichia coli ABU
           83972]
          Length = 742

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|53712822|ref|YP_098814.1| putative dehydrogenase [Bacteroides fragilis YCH46]
 gi|52215687|dbj|BAD48280.1| putative dehydrogenase [Bacteroides fragilis YCH46]
          Length = 607

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 8/74 (10%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                 +  C  C  C  +C   AIT ++              +ID  KC  CGLC++ C
Sbjct: 1   MINITDKSECCGCNACGDVCAHNAITFKTDIEGFWYP------EIDKDKCTDCGLCEKVC 54

Query: 114 PVDAIVE--GPNFE 125
           P+  I E    +FE
Sbjct: 55  PIVNIEELKKNDFE 68


>gi|16129587|ref|NP_416146.1| electron transport complex protein required for the reduction of
           SoxR; predicted membrane-associated NADH oxidoreductase
           [Escherichia coli str. K-12 substr. MG1655]
 gi|89108471|ref|AP_002251.1| fused predicted 4Fe-4S ferredoxin-type protein [Escherichia coli
           str. K-12 substr. W3110]
 gi|170081293|ref|YP_001730613.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Escherichia coli str. K-12 substr. DH10B]
 gi|238900845|ref|YP_002926641.1| fused putative 4Fe-4S ferredoxin-type protein/hypothetical protein
           [Escherichia coli BW2952]
 gi|17368316|sp|P77611|RNFC_ECOLI RecName: Full=Electron transport complex protein rnfC
 gi|226735441|sp|B1XFU1|RNFC_ECODH RecName: Full=Electron transport complex protein rnfC
 gi|259494049|sp|C4ZY92|RNFC_ECOBW RecName: Full=Electron transport complex protein rnfC
 gi|1742688|dbj|BAA15384.1| fused predicted 4Fe-4S ferredoxin-type protein [Escherichia coli
           str. K12 substr. W3110]
 gi|1787916|gb|AAC74701.1| electron transport complex protein required for the reduction of
           SoxR; predicted membrane-associated NADH oxidoreductase
           [Escherichia coli str. K-12 substr. MG1655]
 gi|169889128|gb|ACB02835.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Escherichia coli str. K-12 substr. DH10B]
 gi|238861218|gb|ACR63216.1| fused predicted 4Fe-4S ferredoxin-type protein/conserved protein
           [Escherichia coli BW2952]
 gi|260449247|gb|ACX39669.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli DH1]
 gi|309701855|emb|CBJ01167.1| electron transport complex protein [Escherichia coli ETEC H10407]
 gi|315136270|dbj|BAJ43429.1| electron transport complex protein RnfC [Escherichia coli DH1]
          Length = 740

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|194436648|ref|ZP_03068749.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli 101-1]
 gi|254161691|ref|YP_003044799.1| electron transport complex protein RnfC [Escherichia coli B str.
           REL606]
 gi|194424680|gb|EDX40666.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli 101-1]
 gi|253973592|gb|ACT39263.1| electron transport complex protein RnfC [Escherichia coli B str.
           REL606]
 gi|253977787|gb|ACT43457.1| electron transport complex protein RnfC [Escherichia coli
           BL21(DE3)]
 gi|313848649|emb|CAQ32106.2| member of SoxR-reducing complex [Escherichia coli BL21(DE3)]
          Length = 740

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|194431936|ref|ZP_03064226.1| electron transport complex, RnfABCDGE type, C subunit [Shigella
           dysenteriae 1012]
 gi|194419844|gb|EDX35923.1| electron transport complex, RnfABCDGE type, C subunit [Shigella
           dysenteriae 1012]
          Length = 740

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|191165932|ref|ZP_03027769.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli B7A]
 gi|193064894|ref|ZP_03045970.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli E22]
 gi|260843935|ref|YP_003221713.1| fused putative 4Fe-4S ferredoxin-type protein/hypothetical protein
           [Escherichia coli O103:H2 str. 12009]
 gi|260855454|ref|YP_003229345.1| fused putative 4Fe-4S ferredoxin-type protein/conserved protein
           [Escherichia coli O26:H11 str. 11368]
 gi|260868121|ref|YP_003234523.1| fused putative 4Fe-4S ferredoxin-type protein/hypothetical protein
           [Escherichia coli O111:H- str. 11128]
 gi|301303141|ref|ZP_07209267.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 124-1]
 gi|190904063|gb|EDV63775.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli B7A]
 gi|192927381|gb|EDV81999.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli E22]
 gi|257754103|dbj|BAI25605.1| fused predicted 4Fe-4S ferredoxin-type protein/conserved protein
           [Escherichia coli O26:H11 str. 11368]
 gi|257759082|dbj|BAI30579.1| fused predicted 4Fe-4S ferredoxin-type protein/conserved protein
           [Escherichia coli O103:H2 str. 12009]
 gi|257764477|dbj|BAI35972.1| fused predicted 4Fe-4S ferredoxin-type protein/conserved protein
           [Escherichia coli O111:H- str. 11128]
 gi|300841550|gb|EFK69310.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 124-1]
 gi|315257571|gb|EFU37539.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 85-1]
 gi|320197812|gb|EFW72420.1| Electron transport complex protein RnfC [Escherichia coli EC4100B]
 gi|323163522|gb|EFZ49348.1| electron transport complex protein rnfC [Escherichia coli E128010]
 gi|323180943|gb|EFZ66481.1| electron transport complex protein rnfC [Escherichia coli 1180]
          Length = 740

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|188495694|ref|ZP_03002964.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli 53638]
 gi|188490893|gb|EDU65996.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli 53638]
          Length = 740

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|193070267|ref|ZP_03051211.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli E110019]
 gi|192956448|gb|EDV86907.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli E110019]
          Length = 740

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|110641752|ref|YP_669482.1| electron transport complex protein RnfC [Escherichia coli 536]
 gi|191173436|ref|ZP_03034964.1| electron transport complex protein RnfC [Escherichia coli F11]
 gi|123049190|sp|Q0THJ8|RNFC_ECOL5 RecName: Full=Electron transport complex protein rnfC
 gi|110343344|gb|ABG69581.1| electron transport complex protein RnfC [Escherichia coli 536]
 gi|190906278|gb|EDV65889.1| electron transport complex protein RnfC [Escherichia coli F11]
          Length = 774

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|157161091|ref|YP_001458409.1| electron transport complex protein RnfC [Escherichia coli HS]
 gi|166991047|sp|A8A0H2|RNFC_ECOHS RecName: Full=Electron transport complex protein rnfC
 gi|157066771|gb|ABV06026.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli HS]
          Length = 740

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|157157957|ref|YP_001462918.1| electron transport complex protein RnfC [Escherichia coli E24377A]
 gi|166991046|sp|A7ZM89|RNFC_ECO24 RecName: Full=Electron transport complex protein rnfC
 gi|157079987|gb|ABV19695.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli E24377A]
          Length = 740

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|187732180|ref|YP_001880384.1| electron transport complex protein RnfC [Shigella boydii CDC
           3083-94]
 gi|226735456|sp|B2U2C8|RNFC_SHIB3 RecName: Full=Electron transport complex protein rnfC
 gi|187429172|gb|ACD08446.1| electron transport complex, RnfABCDGE type, C subunit [Shigella
           boydii CDC 3083-94]
          Length = 708

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|332702968|ref|ZP_08423056.1| Cobyrinic acid ac-diamide synthase [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332553117|gb|EGJ50161.1| Cobyrinic acid ac-diamide synthase [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 293

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 14/64 (21%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C  C LC++ C  +AIT+E                I    C  CGLC   CPV AI  
Sbjct: 66  DECTQCLLCQSRCRFEAITMEP--------------RILAEHCEGCGLCAFICPVGAIKM 111

Query: 121 GPNF 124
            P  
Sbjct: 112 EPRH 115


>gi|310659595|ref|YP_003937316.1| molybdopterin oxidoreductase [Clostridium sticklandii DSM 519]
 gi|308826373|emb|CBH22411.1| Molybdopterin oxidoreductase [Clostridium sticklandii]
          Length = 1195

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 30/97 (30%), Gaps = 10/97 (10%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGEER-------CIACKLCEAIC---PAQAITIESG 83
           I +  E      RF GE   R   +           CI C  C  IC             
Sbjct: 587 IRHSQEYDVKPERFAGEMHKRLDEDNHPFIKRDPNKCILCGQCVRICDEVMDNTALGLVS 646

Query: 84  PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
                  +  +  ++    CI CG C   CP  A++E
Sbjct: 647 RGFDTIVKPALEKNLRETDCISCGQCISVCPTGALME 683


>gi|307611754|emb|CBX01462.1| hypothetical protein LPW_31501 [Legionella pneumophila 130b]
          Length = 204

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 13/93 (13%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C   CP  AI   S           + + I   +C  CGLC + CPVD I  
Sbjct: 82  DECIGCTKCIKACPVDAIIGSSK----------LMHAIITHECTGCGLCVDPCPVDCIEM 131

Query: 121 GPNFEFATETRQ--ELYYDKERLLNNGDRWESE 151
                 A   +      Y+ +++    D  E +
Sbjct: 132 VS-LSAAGYDKDLARQRYNAKQMRQLRDEHEKQ 163



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 17/35 (48%)

Query: 84  PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               D TR      I   +CI C  C +ACPVDAI
Sbjct: 65  KEAIDNTRPPSVAAIKEDECIGCTKCIKACPVDAI 99


>gi|293376713|ref|ZP_06622936.1| protein HymB [Turicibacter sanguinis PC909]
 gi|325845200|ref|ZP_08168508.1| protein HymB [Turicibacter sp. HGF1]
 gi|292644670|gb|EFF62757.1| protein HymB [Turicibacter sanguinis PC909]
 gi|325488796|gb|EGC91197.1| protein HymB [Turicibacter sp. HGF1]
          Length = 606

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 2/54 (3%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           ++CI C +C   CPA  I            RR  R+ I+ + CI CG C   CP
Sbjct: 546 DKCIGCGMCAKACPASCIKPVGEVVNEKTGRR--RHVINKVDCIKCGACMATCP 597



 Score = 41.6 bits (96), Expect = 0.037,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 20/59 (33%)

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
                RC  G    +       KCI CG+C +ACP   I            R+    +K
Sbjct: 525 HVVDKRCPSGVCTKLLEYFITDKCIGCGMCAKACPASCIKPVGEVVNEKTGRRRHVINK 583


>gi|188587898|ref|YP_001920057.1| sulfite reductase, subunit C [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188498179|gb|ACD51315.1| sulfite reductase, subunit C [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 345

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 23/74 (31%), Gaps = 8/74 (10%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G   + +     +RC+ C  C   C     +   G                + KCI CG 
Sbjct: 165 GIMGISKIDFDYDRCVGCGACVKECKQHVTSALYGKDGKAAK--------QIDKCIGCGA 216

Query: 109 CQEACPVDAIVEGP 122
           C + CP  A     
Sbjct: 217 CVKVCPTMAWSRSN 230


>gi|54309723|ref|YP_130743.1| electron transport complex protein RnfC [Photobacterium profundum
           SS9]
 gi|46914161|emb|CAG20941.1| putative NADH:ubiquinone oxidoreductase, subunit RnfC
           [Photobacterium profundum SS9]
          Length = 761

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/155 (19%), Positives = 48/155 (30%), Gaps = 23/155 (14%)

Query: 16  FVGA--FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +G       L +        N P  K +          L  + +    CI C  C   C
Sbjct: 338 IIGGSLMGFTLPHA-------NVPITKITNCILAPKRKELPLHTHEMA-CIRCTACAEAC 389

Query: 74  PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF-----EFAT 128
           PA  +  +               + ++  CI CG C   CP   I     +     E   
Sbjct: 390 PAS-LLPQQLQWYAKDQDYAKCEEYNLFDCIECGACAYVCP-SEIPLVQYYRQAKSEITA 447

Query: 129 ETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
             + E   ++ RL     R+E++  R +  D   R
Sbjct: 448 RKQDEANAERARL-----RFEAKNAR-MERDKAER 476


>gi|331006635|ref|ZP_08329919.1| Electron transport complex protein RnfB [gamma proteobacterium
           IMCC1989]
 gi|330419550|gb|EGG93932.1| Electron transport complex protein RnfB [gamma proteobacterium
           IMCC1989]
          Length = 216

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 10/72 (13%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
                    E+ CI C  C   CP  AI   +             + + + +C  C LC 
Sbjct: 110 EVKTVAYIREDECIGCTKCIQACPVDAILGAAKQ----------MHTVIVDECTGCDLCV 159

Query: 111 EACPVDAIVEGP 122
           E CPVD I   P
Sbjct: 160 EPCPVDCIDMLP 171



 Score = 38.2 bits (87), Expect = 0.37,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 15/36 (41%)

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                +         I   +CI C  C +ACPVDAI
Sbjct: 102 DEEHGEEAEVKTVAYIREDECIGCTKCIQACPVDAI 137


>gi|328542363|ref|YP_004302472.1| dihydroorotate dehydrogenase family protein [polymorphum gilvum
           SL003B-26A1]
 gi|326412110|gb|ADZ69173.1| Dihydroorotate dehydrogenase family protein [Polymorphum gilvum
           SL003B-26A1]
          Length = 434

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 6/78 (7%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           +    + + +    ++ CI C  C       A    S            R+++   +C+ 
Sbjct: 327 QHLNLNYIAKAKIDQDLCIKCGRCHI-----ACEDTSHQAITSMVDGVRRFEVIDAECVG 381

Query: 106 CGLCQEACPV-DAIVEGP 122
           C LC   CPV + I   P
Sbjct: 382 CNLCVNVCPVENCITMEP 399


>gi|325660925|ref|ZP_08149552.1| hypothetical protein HMPREF0490_00284 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472432|gb|EGC75643.1| hypothetical protein HMPREF0490_00284 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 594

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 11/78 (14%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G + ++        C  C  C   C  +AI++                 I    CI+CG 
Sbjct: 9   GVNGMKVIDFQNASCKHCYKCVRNCSVKAISVRHEQAH-----------IMNDHCIHCGK 57

Query: 109 CQEACPVDAIVEGPNFEF 126
           C E CP +A     + E 
Sbjct: 58  CLEVCPQNAKRFASDLEL 75


>gi|303237613|ref|ZP_07324173.1| pyruvate synthase [Prevotella disiens FB035-09AN]
 gi|302482065|gb|EFL45100.1| pyruvate synthase [Prevotella disiens FB035-09AN]
          Length = 1186

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 24/82 (29%), Gaps = 16/82 (19%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIE---------------SGPRCHDGTRR 92
           RG  A        E CI C  C  +CP   I                             
Sbjct: 679 RGVEAFHPEWT-SENCIQCNKCAYVCPHACIRPFVLDDEEIKGFNDKTLEMKVPKPMAGM 737

Query: 93  TVRYDIDMIKCIYCGLCQEACP 114
             R  + ++ C+ CG C + CP
Sbjct: 738 NFRIQVSILDCVGCGNCADVCP 759


>gi|300122846|emb|CBK23853.2| Pyruvate:Ferredoxin (flavodoxin) Oxidoreductase (PFO) [Blastocystis
           hominis]
          Length = 1220

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/170 (12%), Positives = 46/170 (27%), Gaps = 42/170 (24%)

Query: 24  LRYFF---------KAKTTINYP--FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
            +  F         +   +   P       TS   +   A+      ++ C  C  C  +
Sbjct: 672 FKNLFYPTTLLDGDRFPVSAFTPGGIHPTDTSKYEKRGFAVSVPVWNKDTCTQCNQCSVM 731

Query: 73  CPA--------QAITIESGPRCHDGTRR--------TVRYDIDMIKCIYCGLCQEACPVD 116
           CP          A   +  P                  R     + C  C +C   CP  
Sbjct: 732 CPHAVIRPFLMDAEETKKAPASFVSLPAVGDELKGLNFRIQASPLDCTGCEVCVNVCPTQ 791

Query: 117 AIVEGP------------NFEFATETRQELYYDKERLLNNGDRWESEIVR 154
           ++   P            +F      + +L    ++    G +++  +++
Sbjct: 792 SLNMEPLGSVKDVEGKNWDFAMTLTNKGDLV---DKTTVKGSQFQPPLIQ 838


>gi|295094633|emb|CBK83724.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta
           subunits [Coprococcus sp. ART55/1]
          Length = 286

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/95 (28%), Positives = 32/95 (33%), Gaps = 12/95 (12%)

Query: 24  LRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG 83
           L + FK   T               G          E  CI C +C   C   AIT+  G
Sbjct: 127 LSHKFKFGVTGCQ-NNCLKAEENDVGIKGAMVVEWDEPSCIMCGVCVKACREGAITMADG 185

Query: 84  PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                         +D  KC YCG C +ACP DA 
Sbjct: 186 KII-----------LDTDKCNYCGRCAKACPTDAW 209



 Score = 34.3 bits (77), Expect = 5.7,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 16/48 (33%), Gaps = 3/48 (6%)

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           C    +  E       G         D   CI CG+C +AC   AI  
Sbjct: 138 CQNNCLKAEENDVGIKGAMVVEW---DEPSCIMCGVCVKACREGAITM 182


>gi|293401574|ref|ZP_06645717.1| hypothetical protein
 gi|291305212|gb|EFE46458.1| [Fe] hydrogenase [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 482

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 26/70 (37%), Gaps = 6/70 (8%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY------DIDMIKCIYCGL 108
                 ++C  C  C+  CP  AI     P         +        +ID  KCI CG 
Sbjct: 127 HAFIDYDKCKECGACKNACPFNAIVETQRPCMKSCPVDAISMGESGLAEIDEEKCINCGA 186

Query: 109 CQEACPVDAI 118
           CQ  CP  AI
Sbjct: 187 CQAKCPFGAI 196



 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 26/87 (29%), Gaps = 7/87 (8%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG-----TRRTV 94
           K         +  + R  +    C  C + +           +                 
Sbjct: 69  KPPVPVEHENKRQIVRVID--AACDGCSIHKIQVTDNCRKCMAKACLSACKFDAIHMGND 126

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEG 121
              ID  KC  CG C+ ACP +AIVE 
Sbjct: 127 HAFIDYDKCKECGACKNACPFNAIVET 153


>gi|269102700|ref|ZP_06155397.1| iron-sulfur cluster-binding protein [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268162598|gb|EEZ41094.1| iron-sulfur cluster-binding protein [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 552

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 9/73 (12%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C  C  C A+CP +A+                        CI CG+CQ+ACP + I  
Sbjct: 418 DDCTLCMGCVAVCPTRALHAIGDRPGLL---------FIEEDCIQCGMCQKACPENVITV 468

Query: 121 GPNFEFATETRQE 133
            P F +  + R+E
Sbjct: 469 EPGFNWGWQARKE 481



 Score = 35.5 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 10/53 (18%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C   CPA AI+  +               I+   C   G C  ACP +AI
Sbjct: 191 CDRCLDACPAGAISANADQEIE----------INPYLCQGVGTCATACPTEAI 233



 Score = 35.5 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTV--RYDIDMIKCIYCG 107
           E CI C +C+  CP   IT+E G       R+     ++     CI CG
Sbjct: 449 EDCIQCGMCQKACPENVITVEPGFNWGWQARKEAKLVHEEPAACCINCG 497


>gi|168182073|ref|ZP_02616737.1| [Fe] hydrogenase [Clostridium botulinum Bf]
 gi|182674775|gb|EDT86736.1| [Fe] hydrogenase [Clostridium botulinum Bf]
          Length = 497

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 7/69 (10%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIKCIYCGLC 109
              + +C  C LC+ +CP  AI     P                 R  I+   CI CG C
Sbjct: 135 YIDQNKCRECGLCKKVCPYNAIVEVMRPCKKVCPTGALEINPDDKRAMIEKENCINCGAC 194

Query: 110 QEACPVDAI 118
             ACP  AI
Sbjct: 195 MAACPFGAI 203


>gi|163842566|ref|YP_001626970.1| dihydropyrimidine dehydrogenase [Brucella suis ATCC 23445]
 gi|163673289|gb|ABY37400.1| dihydroorotate dehydrogenase family protein [Brucella suis ATCC
           23445]
          Length = 436

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 6/79 (7%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI C  C       A    S             +++   +C+ 
Sbjct: 330 QYLNLNYVTKARINQDLCIQCGRCHI-----ACEDTSHQAITAMVNGVRHFEVIDEECVG 384

Query: 106 CGLCQEACPV-DAIVEGPN 123
           C LC   CPV + I     
Sbjct: 385 CNLCVNVCPVENCITMEQI 403


>gi|320156506|ref|YP_004188885.1| ferredoxin-type protein NapG (periplasmic nitrate reductase)
           [Vibrio vulnificus MO6-24/O]
 gi|319931818|gb|ADV86682.1| ferredoxin-type protein NapG (periplasmic nitrate reductase)
           [Vibrio vulnificus MO6-24/O]
          Length = 288

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 23/73 (31%), Gaps = 8/73 (10%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            LR      E C  C  C  +C          P       +     +    CI CG C +
Sbjct: 214 VLRISAENREACTKCMDCYNVC--------PEPEVLRQPLKEGDRRVMDQNCISCGRCID 265

Query: 112 ACPVDAIVEGPNF 124
            CP + +V    F
Sbjct: 266 VCPENVLVFTHRF 278


>gi|300120212|emb|CBK19766.2| Pyruvate:Ferredoxin (flavodoxin) Oxidoreductase (PFO) [Blastocystis
           hominis]
          Length = 1220

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/170 (12%), Positives = 46/170 (27%), Gaps = 42/170 (24%)

Query: 24  LRYFF---------KAKTTINYP--FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
            +  F         +   +   P       TS   +   A+      ++ C  C  C  +
Sbjct: 672 FKNLFYPTTLLDGDRFPVSAFTPGGIHPTDTSKYEKRGFAVSVPVWNKDTCTQCNQCSVM 731

Query: 73  CPA--------QAITIESGPRCHDGTRR--------TVRYDIDMIKCIYCGLCQEACPVD 116
           CP          A   +  P                  R     + C  C +C   CP  
Sbjct: 732 CPHAVIRPFLMDAEETKKAPASFVSLPAVGDELKGLNFRIQASPLDCTGCEVCVNVCPTQ 791

Query: 117 AIVEGP------------NFEFATETRQELYYDKERLLNNGDRWESEIVR 154
           ++   P            +F      + +L    ++    G +++  +++
Sbjct: 792 SLNMEPLGSVKDVEGKNWDFAMTLTNKGDLV---DKTTVKGSQFQPPLIQ 838


>gi|288561161|ref|YP_003424647.1| methyl viologen-reducing hydrogenase beta subunit MvhB
           [Methanobrevibacter ruminantium M1]
 gi|288543871|gb|ADC47755.1| methyl viologen-reducing hydrogenase beta subunit MvhB
           [Methanobrevibacter ruminantium M1]
          Length = 410

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 29/60 (48%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E++CI C +C   CP  AI I    +    ++    + +D   CI C  C +ACP D I
Sbjct: 170 DEDKCIQCGVCSQSCPWNAIFIAGNAKPAKRSKVMKSFTLDADACIGCNSCVDACPGDFI 229



 Score = 41.6 bits (96), Expect = 0.036,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID-MIKCIYCGLCQEACPVDAI 118
              C+ C  C  +CP  A+ ++   +  DG        I    KC  CG C +ACP D +
Sbjct: 319 FIMCVRCGACANVCPNDALQLDYVDKEIDGETVMRDRIIFNPSKCDECGECIDACPYDML 378

Query: 119 V 119
            
Sbjct: 379 H 379



 Score = 40.9 bits (94), Expect = 0.056,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C+ C+ C  ICP   I    G +            + +  C  CG+C   CPVDAI   
Sbjct: 103 FCVMCQKCVDICPVDVI-GVPGIKEPASRVIEPEGAVYIDDCKGCGVCVAECPVDAITLS 161



 Score = 40.5 bits (93), Expect = 0.074,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 27/64 (42%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               E+C+    C   CP +AI + +       +R+    +   I C+ CG C   CP D
Sbjct: 276 CWDGEKCLYDGGCALKCPTEAIRVVTKRGMEVPSRQKDMGEQSFIMCVRCGACANVCPND 335

Query: 117 AIVE 120
           A+  
Sbjct: 336 ALQL 339



 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 9/71 (12%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C  C +C A CP  AIT+ +              ++D  KCI CG+C ++CP +AI  
Sbjct: 141 DDCKGCGVCVAECPVDAITLSA---------YGEPIEVDEDKCIQCGVCSQSCPWNAIFI 191

Query: 121 GPNFEFATETR 131
             N + A  ++
Sbjct: 192 AGNAKPAKRSK 202



 Score = 34.7 bits (78), Expect = 4.4,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 58  NGEERCIACK---LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           +    C  C     C  +C   A+ ++      +G    VR   +  KC  CG C +ACP
Sbjct: 28  DHIVYCDTCSEEPKCAEVCTKGALQVDDIAIDEEGNT-QVRLIFNKTKCDECGDCVDACP 86

Query: 115 VDAIVEGPN 123
              +   P 
Sbjct: 87  SKTLKLDPE 95



 Score = 34.7 bits (78), Expect = 4.8,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 14/31 (45%)

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           +   CI CG C+  CP  AI  G +  +   
Sbjct: 5   NEDSCIKCGACEGVCPTAAIEVGDHIVYCDT 35


>gi|297527337|ref|YP_003669361.1| flavoprotein [Staphylothermus hellenicus DSM 12710]
 gi|297256253|gb|ADI32462.1| flavoprotein [Staphylothermus hellenicus DSM 12710]
          Length = 253

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 10/65 (15%)

Query: 59  GEERCIACKLC---EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
             ++CI C  C   E  CP  AI            +  +   ID  KC  C +C   CPV
Sbjct: 148 DLDKCIYCMKCLLEEGFCPYNAI-------VASSCKYGIHLSIDYSKCRGCEVCVNKCPV 200

Query: 116 DAIVE 120
            AI  
Sbjct: 201 KAIKC 205


>gi|257463174|ref|ZP_05627574.1| NAD-reducing iron-only hydrogenase large subunit [Fusobacterium sp.
           D12]
          Length = 260

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 59  GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPV 115
              +CI C+ CE+IC   Q+  I +G R          +   ++  +C +CG C   CP 
Sbjct: 146 DVTKCIMCRRCESICRDIQSCNILTGVRRGFSAVVDTAFSKTLEHTRCTFCGQCVSVCPT 205

Query: 116 DAIVEGPN 123
            AI E  N
Sbjct: 206 GAIYETDN 213


>gi|259908516|ref|YP_002648872.1| electron transport complex protein RnfB [Erwinia pyrifoliae Ep1/96]
 gi|224964138|emb|CAX55645.1| Electron transport complex protein [Erwinia pyrifoliae Ep1/96]
 gi|283478476|emb|CAY74392.1| Electron transport complex protein rnfB [Erwinia pyrifoliae DSM
           12163]
 gi|310767588|gb|ADP12538.1| electron transport complex protein RnfB [Erwinia sp. Ejp617]
          Length = 191

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 27/96 (28%), Gaps = 10/96 (10%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E          E   +     E  CI C  C   CP  AI   +             + +
Sbjct: 92  EPQPLGDEESREPERKVAWIDEANCIGCTKCIQACPVDAIVGAT----------RAMHTV 141

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134
               C  C LC   CP D I   P        + +L
Sbjct: 142 LSDICTGCDLCVAPCPTDCIEMRPVATTTANWKWDL 177


>gi|217077862|ref|YP_002335580.1| hydrogenase [Thermosipho africanus TCF52B]
 gi|217037717|gb|ACJ76239.1| hydrogenase [Thermosipho africanus TCF52B]
          Length = 583

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 3/71 (4%)

Query: 57  PNGEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDI--DMIKCIYCGLCQEAC 113
                RCI C+ C  +C   Q + I S       T     +D+      CI CG C   C
Sbjct: 139 QRDLSRCIKCQRCVRVCSEIQGMNIYSMIERGYKTIPQTAFDMPVYETNCISCGQCAYLC 198

Query: 114 PVDAIVEGPNF 124
           PV AI E P++
Sbjct: 199 PVGAIYETPDW 209


>gi|218962108|ref|YP_001741883.1| putative iron-sulfur cluster-binding protein [Candidatus
           Cloacamonas acidaminovorans]
 gi|167730765|emb|CAO81677.1| putative iron-sulfur cluster-binding protein [Candidatus
           Cloacamonas acidaminovorans]
          Length = 374

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 28/83 (33%), Gaps = 12/83 (14%)

Query: 42  STSPRFRGEHALRRYPNG--EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
                 R       Y      ERC  C +C   CP +AI+ ++  +            I 
Sbjct: 294 YVPDIARKAFRKVYYFYPAVSERCKQCGICVKSCPVKAISWQNDTKP----------YIH 343

Query: 100 MIKCIYCGLCQEACPVDAIVEGP 122
             +CI C  C E CP  AI    
Sbjct: 344 KEQCIKCLCCHELCPYQAIDIKK 366



 Score = 40.1 bits (92), Expect = 0.094,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 16/45 (35%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                       +    Y     +C  CG+C ++CPV AI    +
Sbjct: 293 KYVPDIARKAFRKVYYFYPAVSERCKQCGICVKSCPVKAISWQND 337


>gi|161503264|ref|YP_001570376.1| hypothetical protein SARI_01334 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160864611|gb|ABX21234.1| hypothetical protein SARI_01334 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 1174

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 36/144 (25%), Gaps = 36/144 (25%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPIGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 699

Query: 74  PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP- 114
           P  A                   +++   R   G +      +    C  C LC E CP 
Sbjct: 700 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757

Query: 115 -------VDAIVEGPNFEFATETR 131
                  V AI      E   E +
Sbjct: 758 KDRQNPEVKAINMMSRLEHVEEEK 781


>gi|150020029|ref|YP_001305383.1| dihydroorotate dehydrogenase family protein [Thermosipho
           melanesiensis BI429]
 gi|149792550|gb|ABR29998.1| dihydroorotate dehydrogenase family protein [Thermosipho
           melanesiensis BI429]
          Length = 360

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 12/62 (19%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E+C  C +CE +CP  AI I+   +            I+  KC  CGLC+  CP  +I
Sbjct: 309 NHEKCTLCGICEKVCPYFAIKIDKKVK------------INTYKCFGCGLCESRCPTKSI 356

Query: 119 VE 120
             
Sbjct: 357 KI 358


>gi|117618882|ref|YP_856035.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117560289|gb|ABK37237.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 1191

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 29/101 (28%), Gaps = 24/101 (23%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR------- 85
           T    FEK   +      H         + CI C  C  +CP  A+  +   +       
Sbjct: 672 TATSRFEKRDIAREIPIWH--------SDICIQCGNCVFVCPHAALRAKFYHQDWLATAP 723

Query: 86  ---------CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
                                +    C  CG C +ACPV A
Sbjct: 724 EAAQSVPVTAKGFPDSRYTLQLYPEDCTGCGQCVKACPVRA 764



 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 8/20 (40%), Positives = 9/20 (45%)

Query: 99  DMIKCIYCGLCQEACPVDAI 118
               CI CG C   CP  A+
Sbjct: 690 HSDICIQCGNCVFVCPHAAL 709


>gi|54024557|ref|YP_118799.1| putative ferredoxin reductase [Nocardia farcinica IFM 10152]
 gi|54016065|dbj|BAD57435.1| putative ferredoxin reductase [Nocardia farcinica IFM 10152]
          Length = 554

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 22/63 (34%), Gaps = 3/63 (4%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           +RC     C A CP   I                   ID   CI CG C EACPV A+  
Sbjct: 7   QRCCNDASCVAECPVDCIRPRPE---DPEFTSAEMLYIDPETCIDCGACFEACPVGAVYA 63

Query: 121 GPN 123
              
Sbjct: 64  EDE 66


>gi|320653114|gb|EFX21308.1| electron transport complex protein RnfC [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
          Length = 677

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|315618815|gb|EFU99398.1| electron transport complex protein rnfC [Escherichia coli 3431]
          Length = 740

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|331647118|ref|ZP_08348212.1| electron transport complex protein RnfC [Escherichia coli M605]
 gi|331043901|gb|EGI16037.1| electron transport complex protein RnfC [Escherichia coli M605]
          Length = 677

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|293414946|ref|ZP_06657589.1| electron transport complex protein RnfC [Escherichia coli B185]
 gi|291432594|gb|EFF05573.1| electron transport complex protein RnfC [Escherichia coli B185]
          Length = 611

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|225378769|ref|ZP_03755990.1| hypothetical protein ROSEINA2194_04439 [Roseburia inulinivorans DSM
           16841]
 gi|225209361|gb|EEG91715.1| hypothetical protein ROSEINA2194_04439 [Roseburia inulinivorans DSM
           16841]
          Length = 329

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 33/120 (27%), Gaps = 20/120 (16%)

Query: 4   FRCNVSFLFLK--EFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
            +  + FLF      +    +     ++       P              +L  Y     
Sbjct: 221 LQRAIGFLFGWKVSILVILLILSTMIYRPFCKYLCPLGAIY---GIFNRFSLYHYEIDAA 277

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           +C  C LC   C       E+                    CI CG C++ CP  AI  G
Sbjct: 278 KCTKCGLCAKKCDMGVKVYENPNSVE---------------CIRCGKCKDVCPTGAIHSG 322


>gi|197285165|ref|YP_002151037.1| electron transport complex protein RnfC [Proteus mirabilis HI4320]
 gi|194682652|emb|CAR42773.1| electron transport complex protein [Proteus mirabilis HI4320]
          Length = 839

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            N EE CI C  C   CP+  +  +       G         ++  CI CG C   CP
Sbjct: 374 DNIEEACIRCGQCVDACPSG-LLPQQLYWFSKGKEHEKAQQHNLFDCIECGACAFVCP 430


>gi|168178613|ref|ZP_02613277.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum NCTC
           2916]
 gi|226948460|ref|YP_002803551.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum A2 str.
           Kyoto]
 gi|182670715|gb|EDT82689.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum NCTC
           2916]
 gi|226844543|gb|ACO87209.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum A2 str.
           Kyoto]
          Length = 1172

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 40/126 (31%), Gaps = 24/126 (19%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------ITIESGPRCHDGTRRTV 94
           G+TS   RG   +       ++CI C  C  ICP            E          +  
Sbjct: 668 GTTSYEKRGIAVMIPEWQ-IDKCIQCNQCSYICPHSVIRAYLLNKDEKEKAPSAFETKKA 726

Query: 95  ----------RYDIDMIKCIYCGLCQEACPVD--AIVEGP---NFEFATETRQ--ELYYD 137
                     R  I  + C  CG C + CP    A++        E  +E  +       
Sbjct: 727 TGKGLEELGYRIQISPLDCTGCGNCADVCPAPGKALIMKNAEEQIEMQSENWEFGLNITT 786

Query: 138 KERLLN 143
           KE L++
Sbjct: 787 KENLMD 792


>gi|83941743|ref|ZP_00954205.1| iron-sulfur cluster-binding protein [Sulfitobacter sp. EE-36]
 gi|83847563|gb|EAP85438.1| iron-sulfur cluster-binding protein [Sulfitobacter sp. EE-36]
          Length = 650

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 9/82 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + C  C  C ++CP+ A+                +       C+ CGLC   CP DAI
Sbjct: 498 DTDACTLCLSCVSLCPSGALGDNPD---------LPQLRFQEDACLQCGLCANVCPEDAI 548

Query: 119 VEGPNFEFATETRQELYYDKER 140
              P      +   ++   +E 
Sbjct: 549 TLKPQLNLTAQAFTQVVLHEEE 570



 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 11/53 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C  +CP  AIT                  ID + C  CG C   CP  AI
Sbjct: 279 CSNCLDLCPTGAITSAGE-----------HVAIDPMICAGCGSCSAVCPSGAI 320


>gi|322805514|emb|CBZ03078.1| pyruvate-flavodoxin oxidoreductase [Clostridium botulinum H04402
           065]
          Length = 1172

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 43/126 (34%), Gaps = 24/126 (19%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA---QAITIESGPRCHDGTRRTV--- 94
           G+TS   RG   +       ++CI C  C  ICP    +A  +    +    +       
Sbjct: 668 GTTSYEKRGIAVMIPEWQ-IDKCIQCNQCSYICPHSVIRAYLLNKDEKEKSPSAFETKKA 726

Query: 95  ----------RYDIDMIKCIYCGLCQEACPVD--AIVEGP---NFEFATETRQ--ELYYD 137
                     R  I  + C  CG C + CP    A++        E  +E  +       
Sbjct: 727 TGKGLEELGYRIQISPLDCTGCGNCADVCPAPGKALIMKNAEEQIEMQSENWEFGLNITT 786

Query: 138 KERLLN 143
           KE L++
Sbjct: 787 KENLMD 792


>gi|315180126|gb|ADT87040.1| iron-sulfur cluster-binding protein [Vibrio furnissii NCTC 11218]
          Length = 553

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 9/75 (12%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             C  C  C A+CP +A+  E                     C+ CGLC +ACP +A+  
Sbjct: 418 TDCTLCMSCVAVCPTRALHHEGELPS---------LKFVEQDCVQCGLCVKACPENALTA 468

Query: 121 GPNFEFATETRQELY 135
                +    RQ + 
Sbjct: 469 VQQLNWNATQRQSVV 483



 Score = 40.1 bits (92), Expect = 0.091,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 6/54 (11%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           C  C   CPA A++ E   +         R  I+   C   G C  +CP +AI 
Sbjct: 186 CDRCVDACPAGALSSEGSEQTGH------RIQINPYLCQGVGTCATSCPTEAIH 233


>gi|310826591|ref|YP_003958948.1| FdhA-II protein [Eubacterium limosum KIST612]
 gi|308738325|gb|ADO35985.1| FdhA-II protein [Eubacterium limosum KIST612]
          Length = 895

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 5/69 (7%)

Query: 55  RYPNGEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDI----DMIKCIYCGLC 109
            Y     +CI C  C  +C   Q   + +       T     +D+        C+ CG C
Sbjct: 141 FYTYDPNKCILCNRCVKVCEHLQCNHVLAKCDRGYETNINPVFDMLRGDKNSNCVNCGNC 200

Query: 110 QEACPVDAI 118
              CP  A+
Sbjct: 201 IAECPTGAL 209


>gi|307138283|ref|ZP_07497639.1| electron transport complex protein RnfC [Escherichia coli H736]
 gi|331642222|ref|ZP_08343357.1| electron transport complex protein RnfC [Escherichia coli H736]
 gi|331039020|gb|EGI11240.1| electron transport complex protein RnfC [Escherichia coli H736]
          Length = 621

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|256158986|ref|ZP_05456823.1| dihydropyrimidine dehydrogenase [Brucella ceti M490/95/1]
 gi|256254344|ref|ZP_05459880.1| dihydropyrimidine dehydrogenase [Brucella ceti B1/94]
 gi|261221504|ref|ZP_05935785.1| dihydropyrimidine dehydrogenase [Brucella ceti B1/94]
 gi|265997467|ref|ZP_06110024.1| dihydropyrimidine dehydrogenase [Brucella ceti M490/95/1]
 gi|260920088|gb|EEX86741.1| dihydropyrimidine dehydrogenase [Brucella ceti B1/94]
 gi|262551935|gb|EEZ07925.1| dihydropyrimidine dehydrogenase [Brucella ceti M490/95/1]
          Length = 436

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 6/79 (7%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI C  C       A    S             +++   +C+ 
Sbjct: 330 QYLNLNYVTKARINQDLCIQCGRCHI-----ACEDTSHQAITAMVNGARHFEVIDEECVG 384

Query: 106 CGLCQEACPV-DAIVEGPN 123
           C LC   CPV + I     
Sbjct: 385 CNLCVNVCPVENCITMEQI 403


>gi|255308110|ref|ZP_05352281.1| putative nitroreductase [Clostridium difficile ATCC 43255]
          Length = 258

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 31/84 (36%), Gaps = 11/84 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +E CI C LC+  CP   I IE+               I    C+ CG C   CP  AI
Sbjct: 10  DKELCIGCGLCKNDCPVNNIIIENKKSV-----------IKKQDCLMCGHCAAICPTKAI 58

Query: 119 VEGPNFEFATETRQELYYDKERLL 142
                 E   E   +   D + LL
Sbjct: 59  TLTGFDEPPIELTNKPKLDSDELL 82



 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            +     ++D   CI CGLC+  CPV+ I+   
Sbjct: 1   MKYQHIIEVDKELCIGCGLCKNDCPVNNIIIEN 33


>gi|254976689|ref|ZP_05273161.1| putative nitroreductase [Clostridium difficile QCD-66c26]
 gi|255094072|ref|ZP_05323550.1| putative nitroreductase [Clostridium difficile CIP 107932]
 gi|255518484|ref|ZP_05386160.1| putative nitroreductase [Clostridium difficile QCD-97b34]
 gi|255651604|ref|ZP_05398506.1| putative nitroreductase [Clostridium difficile QCD-37x79]
 gi|306521411|ref|ZP_07407758.1| putative nitroreductase [Clostridium difficile QCD-32g58]
          Length = 258

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 31/84 (36%), Gaps = 11/84 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +E CI C LC+  CP   I IE+               I    C+ CG C   CP  AI
Sbjct: 10  DKELCIGCGLCKNDCPVNNIIIENKKSV-----------IKKQDCLMCGHCAAICPTKAI 58

Query: 119 VEGPNFEFATETRQELYYDKERLL 142
                 E   E   +   D + LL
Sbjct: 59  TLTGFDEPPIELTNKPKLDSDELL 82



 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            +     ++D   CI CGLC+  CPV+ I+   
Sbjct: 1   MKYQHIIEVDKELCIGCGLCKNDCPVNNIIIEN 33


>gi|225851829|ref|YP_002732062.1| dihydropyrimidine dehydrogenase [Brucella melitensis ATCC 23457]
 gi|256264655|ref|ZP_05467187.1| dihydropyrimidine dehydrogenase [Brucella melitensis bv. 2 str.
           63/9]
 gi|225640194|gb|ACO00108.1| dihydroorotate dehydrogenase family protein [Brucella melitensis
           ATCC 23457]
 gi|263095024|gb|EEZ18732.1| dihydropyrimidine dehydrogenase [Brucella melitensis bv. 2 str.
           63/9]
 gi|326408324|gb|ADZ65389.1| dihydropyrimidine dehydrogenase [Brucella melitensis M28]
 gi|326538039|gb|ADZ86254.1| dihydroorotate dehydrogenase family protein [Brucella melitensis
           M5-90]
          Length = 436

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 6/79 (7%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI C  C       A    S             +++   +C+ 
Sbjct: 330 QYLNLNYVTKARINQDLCIQCGRCHI-----ACEDTSHQAITAMVNGARHFEVIDEECVG 384

Query: 106 CGLCQEACPV-DAIVEGPN 123
           C LC   CPV + I     
Sbjct: 385 CNLCVNVCPVENCITMEQI 403


>gi|220916796|ref|YP_002492100.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954650|gb|ACL65034.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 438

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 10/86 (11%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           +  ERC+ C  C   CP  AI     P      R+  R  +D  +C+ CG+C   C   A
Sbjct: 290 SDRERCLGCGKCSKRCPVGAIPRVPDPDPRF--RKHGRPQVDEARCLGCGVCTLTCNPGA 347

Query: 118 IVEGPNFEFATETRQELYYDKERLLN 143
           +            R +     E L  
Sbjct: 348 MKLHH--------RTQRVLHPEDLFE 365


>gi|153829757|ref|ZP_01982424.1| iron-sulfur cluster-binding protein [Vibrio cholerae 623-39]
 gi|148874736|gb|EDL72871.1| iron-sulfur cluster-binding protein [Vibrio cholerae 623-39]
          Length = 553

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 9/75 (12%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             C  C  C A+CP +A+                        C+ CGLC +ACP  A+  
Sbjct: 418 SDCTLCMSCVAVCPTRALHPAGDSPA---------LRFIEQDCVQCGLCVKACPEQALSA 468

Query: 121 GPNFEFATETRQELY 135
            P   +    RQ + 
Sbjct: 469 TPQLNWNKAARQGVV 483



 Score = 40.9 bits (94), Expect = 0.067,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 14/81 (17%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           C+ C   CPA A++ E   +         R  I+   C   G C  ACP +AI     + 
Sbjct: 186 CERCVDACPAGALSSEGSDQTGH------RIQINPYLCQGVGTCATACPTEAIH----YA 235

Query: 126 FA-TETRQELYYDKERLLNNG 145
                  Q+     ERLL N 
Sbjct: 236 LPNPTDTQKFI---ERLLANY 253



 Score = 33.9 bits (76), Expect = 8.1,   Method: Composition-based stats.
 Identities = 6/23 (26%), Positives = 8/23 (34%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIV 119
           +     C  C  C   CP  A+ 
Sbjct: 414 ECQASDCTLCMSCVAVCPTRALH 436


>gi|124027636|ref|YP_001012956.1| hypothetical protein Hbut_0757 [Hyperthermus butylicus DSM 5456]
 gi|123978330|gb|ABM80611.1| hypothetical protein Hbut_0757 [Hyperthermus butylicus DSM 5456]
          Length = 494

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 7/60 (11%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +ERC  C  C   CP  A+ +                     +CI CG C+E CP DAI
Sbjct: 345 DQERCTLCGACAKECPTGALKLREEAEGSALLFLH-------DRCIACGWCREVCPEDAI 397



 Score = 37.0 bits (84), Expect = 0.88,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 13/28 (46%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           +D  +C  CG C + CP  A+      E
Sbjct: 344 VDQERCTLCGACAKECPTGALKLREEAE 371



 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 22/49 (44%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
            +RCIAC  C  +CP  AIT++                 + ++CI CG 
Sbjct: 379 HDRCIACGWCREVCPEDAITVKRAINPAIIDSLVSLVAGEELRCIVCGN 427


>gi|121534272|ref|ZP_01666096.1| electron transfer flavoprotein, alpha subunit [Thermosinus
           carboxydivorans Nor1]
 gi|121307042|gb|EAX47960.1| electron transfer flavoprotein, alpha subunit [Thermosinus
           carboxydivorans Nor1]
          Length = 399

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 11/73 (15%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ++C++C  C + CP  AI +ES  +                 C  CG C +ACPV AI+ 
Sbjct: 8   DQCVSCGACVSTCPFGAIIMESDNKA-----------FITEACTACGACIDACPVGAIIR 56

Query: 121 GPNFEFATETRQE 133
               + A   + +
Sbjct: 57  EEEEKTAAADKDQ 69


>gi|117623815|ref|YP_852728.1| electron transport complex protein RnfC [Escherichia coli APEC O1]
 gi|166225090|sp|A1ABH4|RNFC_ECOK1 RecName: Full=Electron transport complex protein rnfC
 gi|115512939|gb|ABJ01014.1| electron transport complex protein RnfC [Escherichia coli APEC O1]
          Length = 708

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|83951608|ref|ZP_00960340.1| dihydroorotate dehydrogenase family protein [Roseovarius
           nubinhibens ISM]
 gi|83836614|gb|EAP75911.1| dihydroorotate dehydrogenase family protein [Roseovarius
           nubinhibens ISM]
          Length = 434

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 8/82 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117
            ++ CI C  C A C       E              +++   +C+ C LC   CPV+  
Sbjct: 343 DQDACIKCGRCYAAC-------EDTSHQAISMSPDRVFEVKDDECVACNLCVNVCPVEGC 395

Query: 118 IVEGPNFEFATETRQELYYDKE 139
           I          + R     +K+
Sbjct: 396 ITMEQMAPGTVDPRTGKVVEKD 417



 Score = 34.3 bits (77), Expect = 5.7,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 14/35 (40%), Gaps = 3/35 (8%)

Query: 92  RTVRYDIDMIKCIYCGLCQEACP---VDAIVEGPN 123
              +  ID   CI CG C  AC      AI   P+
Sbjct: 336 YIAKARIDQDACIKCGRCYAACEDTSHQAISMSPD 370


>gi|308271717|emb|CBX28325.1| hypothetical protein N47_G36490 [uncultured Desulfobacterium sp.]
          Length = 406

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 11/64 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            + +CI C +CE +C   AI +                DI   KC  CG+C  +C   A+
Sbjct: 344 DQGKCICCGVCEEVCNWGAIKVIDD-----------TVDIVKEKCEGCGVCVCSCTEGAL 392

Query: 119 VEGP 122
               
Sbjct: 393 WLDN 396



 Score = 34.3 bits (77), Expect = 5.6,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 21/45 (46%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           T +     +  T+  +   +D  KCI CG+C+E C   AI    +
Sbjct: 324 TFDEAIVTYGKTKGKIVVSVDQGKCICCGVCEEVCNWGAIKVIDD 368


>gi|293409940|ref|ZP_06653516.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291470408|gb|EFF12892.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 634

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQNCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|254688596|ref|ZP_05151850.1| dihydropyrimidine dehydrogenase [Brucella abortus bv. 6 str. 870]
 gi|260754066|ref|ZP_05866414.1| dihydropyrimidine dehydrogenase [Brucella abortus bv. 6 str. 870]
 gi|260674174|gb|EEX60995.1| dihydropyrimidine dehydrogenase [Brucella abortus bv. 6 str. 870]
          Length = 436

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 6/79 (7%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI C  C       A    S             +++   +C+ 
Sbjct: 330 QYLNLNYVTKARINQDLCIQCGRCHI-----ACEDTSHQAITAMVNGARHFEVIDEECVG 384

Query: 106 CGLCQEACPV-DAIVEGPN 123
           C LC   CPV + I     
Sbjct: 385 CNLCVNVCPVENCITMEQI 403


>gi|253701320|ref|YP_003022509.1| electron transfer flavoprotein subunit alpha [Geobacter sp. M21]
 gi|251776170|gb|ACT18751.1| Electron transfer flavoprotein alpha subunit [Geobacter sp. M21]
          Length = 439

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/100 (28%), Positives = 38/100 (38%), Gaps = 22/100 (22%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACK-LCEAICPAQAITIESGPRCHDGTRRTVRYD 97
           E      + RG+ A+      E RCIAC   C++ CP  AI +                 
Sbjct: 3   EAVKKPKKPRGKAAVL-----EGRCIACGARCQSACPVDAIQMNEAGEP----------I 47

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
           +D  KCI C  C + CP  AI      E A    ++   D
Sbjct: 48  VDASKCIGCVKCVKVCPAQAI------EMAFTPEEKRILD 81


>gi|123492285|ref|XP_001326031.1| Dihydroorotate dehydrogenase family protein [Trichomonas vaginalis
           G3]
 gi|121908939|gb|EAY13808.1| Dihydroorotate dehydrogenase family protein [Trichomonas vaginalis
           G3]
          Length = 372

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 8/66 (12%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                +  C+ C  C   C                     ++ ++  +CI C LC   CP
Sbjct: 301 HAEIDDATCLQCGKCALSCRDN--------SVEAIHLIDGKWKVNHDECIGCALCHSVCP 352

Query: 115 VDAIVE 120
           V A+  
Sbjct: 353 VQAMHM 358


>gi|121607727|ref|YP_995534.1| FAD/NAD(P)-binding oxidoreductase subunit [Verminephrobacter
           eiseniae EF01-2]
 gi|121552367|gb|ABM56516.1| benzoyl-CoA oxygenase, component A [Verminephrobacter eiseniae
           EF01-2]
          Length = 424

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 26/68 (38%), Gaps = 11/68 (16%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             +R++    E CI C  CEA CP  AIT +              Y +    C  C  C 
Sbjct: 8   QVIRQHLIDPEICIRCNTCEATCPVNAITHDEH-----------NYVVRAELCNACLACI 56

Query: 111 EACPVDAI 118
             CP  AI
Sbjct: 57  PPCPTGAI 64



 Score = 38.2 bits (87), Expect = 0.40,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 3/37 (8%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134
           ID   CI C  C+  CPV+AI       +    R EL
Sbjct: 15  IDPEICIRCNTCEATCPVNAITH-DEHNYVV--RAEL 48


>gi|56696676|ref|YP_167037.1| iron-sulfur cluster-binding protein [Ruegeria pomeroyi DSS-3]
 gi|56678413|gb|AAV95079.1| iron-sulfur cluster-binding protein [Ruegeria pomeroyi DSS-3]
          Length = 649

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 9/82 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + C  C  C ++CP+ A+                + +     C+ CG+C+  CP  AI
Sbjct: 497 NTDACTLCLSCVSLCPSGALIDNPD---------LPQLNFQEDACLQCGICRTICPEQAI 547

Query: 119 VEGPNFEFATETRQELYYDKER 140
              P  + +     +   ++E 
Sbjct: 548 TLVPRLDLSDAALGQRVLNEEE 569



 Score = 38.5 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 19/53 (35%), Gaps = 11/53 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C  ICP  AIT                  ID + C  CG C   CP  AI
Sbjct: 278 CSNCLDICPTGAITSAGD-----------HVAIDPMVCAGCGACAALCPSTAI 319


>gi|56460896|ref|YP_156177.1| electron transport complex protein RnfC [Idiomarina loihiensis
           L2TR]
 gi|56179906|gb|AAV82628.1| Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Idiomarina
           loihiensis L2TR]
          Length = 556

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 30/88 (34%), Gaps = 2/88 (2%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C  C   CPA  +  +                 ++  CI CG C   CP   I    
Sbjct: 380 CIRCGACADACPA-TLQPQQLQWLAKAKDYESLEKHNLFDCIECGACAYVCP-SEIPLVH 437

Query: 123 NFEFATETRQELYYDKERLLNNGDRWES 150
            +  A    + +  +K +      R+E+
Sbjct: 438 YYRKAKAEVRNIAREKAKAEQARKRFEA 465


>gi|17987922|ref|NP_540556.1| dihydropyrimidine dehydrogenase [Brucella melitensis bv. 1 str.
           16M]
 gi|256044012|ref|ZP_05446923.1| dihydropyrimidine dehydrogenase [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256112806|ref|ZP_05453727.1| dihydropyrimidine dehydrogenase [Brucella melitensis bv. 3 str.
           Ether]
 gi|260563371|ref|ZP_05833857.1| dihydropyrimidine dehydrogenase [Brucella melitensis bv. 1 str.
           16M]
 gi|265990421|ref|ZP_06102978.1| dihydropyrimidine dehydrogenase [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265994249|ref|ZP_06106806.1| dihydropyrimidine dehydrogenase [Brucella melitensis bv. 3 str.
           Ether]
 gi|17983659|gb|AAL52820.1| dihydropyrimidine dehydrogenase (nadp+) [Brucella melitensis bv. 1
           str. 16M]
 gi|260153387|gb|EEW88479.1| dihydropyrimidine dehydrogenase [Brucella melitensis bv. 1 str.
           16M]
 gi|262765362|gb|EEZ11151.1| dihydropyrimidine dehydrogenase [Brucella melitensis bv. 3 str.
           Ether]
 gi|263001205|gb|EEZ13780.1| dihydropyrimidine dehydrogenase [Brucella melitensis bv. 1 str.
           Rev.1]
          Length = 436

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 6/79 (7%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI C  C       A    S             +++   +C+ 
Sbjct: 330 QYLNLNYVTKARINQDLCIQCGRCHI-----ACEDTSHQAITAMVNGARHFEVIDEECVG 384

Query: 106 CGLCQEACPV-DAIVEGPN 123
           C LC   CPV + I     
Sbjct: 385 CNLCVNVCPVENCITMEQI 403


>gi|134299512|ref|YP_001113008.1| NADH dehydrogenase (quinone) [Desulfotomaculum reducens MI-1]
 gi|134052212|gb|ABO50183.1| NADH dehydrogenase (quinone) [Desulfotomaculum reducens MI-1]
          Length = 627

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 15/97 (15%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
             LRY F+ +   +   +K           AL+ Y    E+C  C +C  +CPA AIT E
Sbjct: 543 TTLRY-FRDEYIAHVRDKKCPAGAC----QALKEYYINPEKCKGCTVCSRVCPAGAITGE 597

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                         + I++  C+ CG C E C   +I
Sbjct: 598 KKQP----------HVINVDLCLKCGACMEKCKFGSI 624


>gi|121998738|ref|YP_001003525.1| putative glutamate synthase (NADPH) small subunit [Halorhodospira
           halophila SL1]
 gi|121590143|gb|ABM62723.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Halorhodospira halophila SL1]
          Length = 647

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 4/59 (6%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           C  C  C   CP  A+          G      Y     +C+ C +C++ CP   I  G
Sbjct: 590 CFECDNCLVYCPQSAVQRVPKAERATGRYVRTDY----SRCVGCHICRDVCPTGYIEMG 644


>gi|323947999|gb|EGB43992.1| electron transporter [Escherichia coli H120]
          Length = 643

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|313203348|ref|YP_004042005.1| fad-dependent pyridine nucleotide-disulfide oxidoreductase
           [Paludibacter propionicigenes WB4]
 gi|312442664|gb|ADQ79020.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Paludibacter propionicigenes WB4]
          Length = 443

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/121 (23%), Positives = 37/121 (30%), Gaps = 12/121 (9%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYP-NG 59
           M  F     + F+   +    + L Y  K K        K   +        +  YP   
Sbjct: 1   MEQFIEFAIYGFVFLLIAG--VLLIYILKQKRESKVVEAKIQLAKENHSHEPVSLYPVID 58

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           + RCI    C   CP              G        I+   CI  G C  ACPV+AI 
Sbjct: 59  QNRCIKSGACVDACP---------EHDILGIVNGKATVINASHCIGHGACFRACPVEAIS 109

Query: 120 E 120
            
Sbjct: 110 L 110


>gi|331653024|ref|ZP_08354029.1| electron transport complex protein RnfC [Escherichia coli M718]
 gi|331049122|gb|EGI21194.1| electron transport complex protein RnfC [Escherichia coli M718]
          Length = 596

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|301026785|ref|ZP_07190189.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 69-1]
 gi|300395323|gb|EFJ78861.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 69-1]
          Length = 804

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIHQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|296242973|ref|YP_003650460.1| ABC transporter-like protein [Thermosphaera aggregans DSM 11486]
 gi|296095557|gb|ADG91508.1| ABC transporter related protein [Thermosphaera aggregans DSM 11486]
          Length = 602

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 5/71 (7%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            + R     ++C     C   CP          +  D +       I   KCI CG+C +
Sbjct: 6   VVDRDYCKPDKCTL--ECIRFCPVN---RTKKVKAIDLSEDKTHSVIFEDKCIGCGICVK 60

Query: 112 ACPVDAIVEGP 122
            CP +AI    
Sbjct: 61  KCPFNAISIVN 71


>gi|183599241|ref|ZP_02960734.1| hypothetical protein PROSTU_02700 [Providencia stuartii ATCC 25827]
 gi|188021471|gb|EDU59511.1| hypothetical protein PROSTU_02700 [Providencia stuartii ATCC 25827]
          Length = 969

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 26/82 (31%), Gaps = 5/82 (6%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEER----CIACKLCEAICPAQAITIESGPRCHDGTRR 92
           P  K                  G++     CI C LC   CPA A+  +       G   
Sbjct: 348 PDLKVPVVKICNCLLVPSVEEVGQKPIEEACIRCGLCVEACPA-ALLPQQLYWFSKGKEH 406

Query: 93  TVRYDIDMIKCIYCGLCQEACP 114
                 ++  CI CG C   CP
Sbjct: 407 EKAQKHNLFDCIECGACAYVCP 428


>gi|153938019|ref|YP_001392647.1| [Fe] hydrogenase [Clostridium botulinum F str. Langeland]
 gi|152933915|gb|ABS39413.1| [Fe] hydrogenase [Clostridium botulinum F str. Langeland]
 gi|295320632|gb|ADG01010.1| [Fe] hydrogenase [Clostridium botulinum F str. 230613]
          Length = 497

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 7/69 (10%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIKCIYCGLC 109
              + +C  C LC+ +CP  AI     P                 R  I+   CI CG C
Sbjct: 135 YIDQNKCRECGLCKKVCPYNAIVEVMRPCKKVCPTGALEINPDDKRAMIEKENCINCGAC 194

Query: 110 QEACPVDAI 118
             ACP  AI
Sbjct: 195 MAACPFGAI 203


>gi|148361193|ref|YP_001252400.1| electron transport complex protein [Legionella pneumophila str.
           Corby]
 gi|296108529|ref|YP_003620230.1| hypothetical protein lpa_04189 [Legionella pneumophila 2300/99
           Alcoy]
 gi|148282966|gb|ABQ57054.1| Electron transport complex protein [Legionella pneumophila str.
           Corby]
 gi|295650431|gb|ADG26278.1| hypothetical protein lpa_04189 [Legionella pneumophila 2300/99
           Alcoy]
          Length = 204

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 13/93 (13%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C   CP  AI   S           + + I   +C  CGLC + CPVD I  
Sbjct: 82  DECIGCTKCIKACPVDAIIGSSK----------LMHAIITHECTGCGLCVDPCPVDCIEM 131

Query: 121 GPNFEFATETRQ--ELYYDKERLLNNGDRWESE 151
                 A   +      Y+ +++    D  E +
Sbjct: 132 VS-LSAAGYDKDLARQRYNAKQMRQLRDEHEKQ 163



 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 17/35 (48%)

Query: 84  PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               D TR      I   +CI C  C +ACPVDAI
Sbjct: 65  KEAIDNTRPPSVAAIKEDECIGCTKCIKACPVDAI 99


>gi|139438746|ref|ZP_01772230.1| Hypothetical protein COLAER_01233 [Collinsella aerofaciens ATCC
           25986]
 gi|133775826|gb|EBA39646.1| Hypothetical protein COLAER_01233 [Collinsella aerofaciens ATCC
           25986]
          Length = 1185

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 17/101 (16%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES--------------- 82
           FE G+++   RG   +  + +   +CI C  C  +CP   I   +               
Sbjct: 680 FELGASAYEKRGVAVVVPHWDE-TKCIQCNQCAYVCPHATIRPFAMTEDEAAAAPEATRT 738

Query: 83  -GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                           +  + C+ C  C + CP  A+   P
Sbjct: 739 LDAMGPKAKGMKFTMAVSPLDCMGCTNCVKVCPKGALEMVP 779


>gi|90412117|ref|ZP_01220123.1| electron transport complex protein RnfB [Photobacterium profundum
           3TCK]
 gi|90326841|gb|EAS43226.1| electron transport complex protein RnfB [Photobacterium profundum
           3TCK]
          Length = 192

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 29/88 (32%), Gaps = 10/88 (11%)

Query: 47  FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
              E+        E+ CI C  C   CP  AI   +             + +   +C  C
Sbjct: 97  HEEENIKTVAFIHEDMCIGCTKCIQACPVDAIVGGTK----------SMHTVIKDECTGC 146

Query: 107 GLCQEACPVDAIVEGPNFEFATETRQEL 134
            LC   CP D I   P  +     + +L
Sbjct: 147 DLCVAPCPTDCIEMIPVKDTPESWKWDL 174


>gi|314934357|ref|ZP_07841716.1| formate dehydrogenase, alpha subunit [Staphylococcus caprae C87]
 gi|313652287|gb|EFS16050.1| formate dehydrogenase, alpha subunit [Staphylococcus caprae C87]
          Length = 984

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 30/89 (33%), Gaps = 13/89 (14%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P+EK               Y    ++CI C  C   C    +             R +  
Sbjct: 131 PYEKDYGP----------FYRYDPDQCILCGRCVEACQDIEVNETISIDWDREHPRVIWD 180

Query: 97  D---IDMIKCIYCGLCQEACPVDAIVEGP 122
           +   I+   C+ CG C   CP +A++E  
Sbjct: 181 NDVPINESSCVSCGQCATVCPCNAMMEVN 209



 Score = 41.2 bits (95), Expect = 0.048,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 16/68 (23%), Gaps = 8/68 (11%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105
           R        C  C      CE                             Y  D  +CI 
Sbjct: 90  RILEKHMLYCTVCDYNNGDCEIHNTMDEWGIQHQTYEYKEKPYEKDYGPFYRYDPDQCIL 149

Query: 106 CGLCQEAC 113
           CG C EAC
Sbjct: 150 CGRCVEAC 157


>gi|297539546|ref|YP_003675315.1| RnfABCDGE type electron transport complex subunit C [Methylotenera
           sp. 301]
 gi|297258893|gb|ADI30738.1| electron transport complex, RnfABCDGE type, C subunit
           [Methylotenera sp. 301]
          Length = 640

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/134 (19%), Positives = 42/134 (31%), Gaps = 9/134 (6%)

Query: 35  NYPFEKGSTSPRFRGEHA----LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT 90
           + P E+   +       A    L   P     CI C  C   CP   +  +         
Sbjct: 352 DLPNEQVPITKAANCIIAAAPDLFAAPPPAMPCIRCARCADACPVN-LQPQELYWFSKAD 410

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWES 150
                 D  +  CI CG C   CP   I     + +A    + +  DK +   +  R  +
Sbjct: 411 NFEKARDYHLFDCIECGCCTYVCP-SDIPLVQYYRYAKS--EIIALDKAKEAADLARERN 467

Query: 151 EI-VRNIVTDSPYR 163
           +  +  I  +   R
Sbjct: 468 DFRLARIEREKLER 481


>gi|294674486|ref|YP_003575102.1| dihydroorotate oxidase [Prevotella ruminicola 23]
 gi|294472971|gb|ADE82360.1| dihydroorotate oxidase [Prevotella ruminicola 23]
          Length = 398

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 22/70 (31%), Gaps = 8/70 (11%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +       ERCI C  C   C        +            +  I   KC+ C LC+  
Sbjct: 331 MVYPKVDHERCIGCGRCYISCMDGGHQAIAFEE--------RQPRIIGTKCVGCHLCRLV 382

Query: 113 CPVDAIVEGP 122
           CP  AI    
Sbjct: 383 CPTGAIGLTK 392


>gi|256368743|ref|YP_003106249.1| dihydropyrimidine dehydrogenase [Brucella microti CCM 4915]
 gi|255998901|gb|ACU47300.1| dihydropyrimidine dehydrogenase [Brucella microti CCM 4915]
          Length = 436

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 6/79 (7%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI C  C       A    S             +++   +C+ 
Sbjct: 330 QYLNLNYVTKARINQDLCIQCGRCHI-----ACEDTSHQAITAMVNGARHFEVIDEECVG 384

Query: 106 CGLCQEACPV-DAIVEGPN 123
           C LC   CPV + I     
Sbjct: 385 CNLCVNVCPVENCITMEQI 403


>gi|254701102|ref|ZP_05162930.1| dihydropyrimidine dehydrogenase [Brucella suis bv. 5 str. 513]
 gi|261751635|ref|ZP_05995344.1| dihydropyrimidine dehydrogenase [Brucella suis bv. 5 str. 513]
 gi|261741388|gb|EEY29314.1| dihydropyrimidine dehydrogenase [Brucella suis bv. 5 str. 513]
          Length = 436

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 6/79 (7%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI C  C       A    S             +++   +C+ 
Sbjct: 330 QYLNLNYVTKARINQDLCIQCGRCHI-----ACEDTSHQAITAMVNGARHFEVIDEECVG 384

Query: 106 CGLCQEACPV-DAIVEGPN 123
           C LC   CPV + I     
Sbjct: 385 CNLCVNVCPVENCITMEQI 403


>gi|268318125|ref|YP_003291844.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit
           [Rhodothermus marinus DSM 4252]
 gi|262335659|gb|ACY49456.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit
           [Rhodothermus marinus DSM 4252]
          Length = 306

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 10/65 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  C+ C LC A CP  AI +                  +   C  CG+C   CP  A+
Sbjct: 237 NEALCVNCLLCWAHCPEPAIVVHDRLMEGF----------NYDYCKGCGICVAMCPTGAL 286

Query: 119 VEGPN 123
              P 
Sbjct: 287 TMVPE 291


>gi|226950727|ref|YP_002805818.1| [Fe] hydrogenase [Clostridium botulinum A2 str. Kyoto]
 gi|226844550|gb|ACO87216.1| [Fe] hydrogenase [Clostridium botulinum A2 str. Kyoto]
 gi|322807610|emb|CBZ05185.1| periplasmic [Fe] hydrogenase [Clostridium botulinum H04402 065]
          Length = 497

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 7/69 (10%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIKCIYCGLC 109
              + +C  C LC+ +CP  AI     P                 R  I+   CI CG C
Sbjct: 135 YIDQNKCRECGLCKKVCPYNAIVEVMRPCKKVCPTGALEINPDDKRAMIEKENCINCGAC 194

Query: 110 QEACPVDAI 118
             ACP  AI
Sbjct: 195 MAACPFGAI 203


>gi|225626809|ref|ZP_03784848.1| dihydroorotate dehydrogenase family protein [Brucella ceti str.
           Cudo]
 gi|254707974|ref|ZP_05169802.1| dihydropyrimidine dehydrogenase [Brucella pinnipedialis M163/99/10]
 gi|254709446|ref|ZP_05171257.1| dihydropyrimidine dehydrogenase [Brucella pinnipedialis B2/94]
 gi|256030940|ref|ZP_05444554.1| dihydropyrimidine dehydrogenase [Brucella pinnipedialis M292/94/1]
 gi|260168075|ref|ZP_05754886.1| dihydropyrimidine dehydrogenase [Brucella sp. F5/99]
 gi|261315465|ref|ZP_05954662.1| dihydropyrimidine dehydrogenase [Brucella pinnipedialis M163/99/10]
 gi|261316968|ref|ZP_05956165.1| dihydropyrimidine dehydrogenase [Brucella pinnipedialis B2/94]
 gi|261757524|ref|ZP_06001233.1| dihydropyrimidine dehydrogenase [Brucella sp. F5/99]
 gi|265988004|ref|ZP_06100561.1| dihydropyrimidine dehydrogenase [Brucella pinnipedialis M292/94/1]
 gi|225618466|gb|EEH15509.1| dihydroorotate dehydrogenase family protein [Brucella ceti str.
           Cudo]
 gi|261296191|gb|EEX99687.1| dihydropyrimidine dehydrogenase [Brucella pinnipedialis B2/94]
 gi|261304491|gb|EEY07988.1| dihydropyrimidine dehydrogenase [Brucella pinnipedialis M163/99/10]
 gi|261737508|gb|EEY25504.1| dihydropyrimidine dehydrogenase [Brucella sp. F5/99]
 gi|264660201|gb|EEZ30462.1| dihydropyrimidine dehydrogenase [Brucella pinnipedialis M292/94/1]
          Length = 436

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 6/79 (7%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI C  C       A    S             +++   +C+ 
Sbjct: 330 QYLNLNYVTKARINQDLCIQCGRCHI-----ACEDTSHQAITAMVNGARHFEVIDEECVG 384

Query: 106 CGLCQEACPV-DAIVEGPN 123
           C LC   CPV + I     
Sbjct: 385 CNLCVNVCPVENCITMEQI 403


>gi|91204283|emb|CAJ71936.1| hypothetical protein kustc1191 [Candidatus Kuenenia
           stuttgartiensis]
          Length = 308

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 11/77 (14%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
                F        + + E  CI C  C   C   AIT+           +  +  ID  
Sbjct: 173 PQIKDFGVHAVEPVFVDAECECIECMKCVEACREDAITV-----------KDAQVTIDKE 221

Query: 102 KCIYCGLCQEACPVDAI 118
           KC+ CG+C + CPV  I
Sbjct: 222 KCVECGICAKVCPVGTI 238


>gi|34498747|ref|NP_902962.1| ferredoxin [Chromobacterium violaceum ATCC 12472]
 gi|34104598|gb|AAQ60956.1| Electron transport complex protein [Chromobacterium violaceum ATCC
           12472]
          Length = 257

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/128 (22%), Positives = 43/128 (33%), Gaps = 16/128 (12%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            PF+     P+ R    +R        CI C LC   CP  AI   +             
Sbjct: 64  IPFDPAGPQPKPRALAVIRED-----SCIGCTLCIQACPVDAIVGAAKQ----------M 108

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRN 155
           + +   +C  C LC   CPVD I   P  +     R+ +     +     D  ++   R+
Sbjct: 109 HTVIADECTGCELCLAPCPVDCIDLVPVADPDDGKRERVMARAAQARKRFDARQARKDRD 168

Query: 156 IVTDSPYR 163
              D   R
Sbjct: 169 -AADKARR 175


>gi|331269853|ref|YP_004396345.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum
           BKT015925]
 gi|329126403|gb|AEB76348.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum
           BKT015925]
          Length = 411

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 26/84 (30%), Gaps = 6/84 (7%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           K            +       ++C+ C  C   C         G +  +         ++
Sbjct: 321 KNIIPAEKLDRDYIVYPEFDMDKCVGCGRCYISCYDG------GHQAIEWDSENRSLVLN 374

Query: 100 MIKCIYCGLCQEACPVDAIVEGPN 123
             KC+ C LC   CPV  I +G  
Sbjct: 375 EEKCVGCHLCSNVCPVQCINKGKI 398


>gi|317485154|ref|ZP_07944036.1| iron only hydrogenase large subunit domain-containing protein
           [Bilophila wadsworthia 3_1_6]
 gi|316923689|gb|EFV44893.1| iron only hydrogenase large subunit domain-containing protein
           [Bilophila wadsworthia 3_1_6]
          Length = 417

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 29/83 (34%), Gaps = 9/83 (10%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
             + +         +L      +E+CI C  C+  CP  AI  E+        R      
Sbjct: 10  EYELNVPETGVQPDSLTFVEIDQEKCIGCDTCQQYCPTGAIYGETFEPHTIKYR------ 63

Query: 98  IDMIKCIYCGLCQEACPVDAIVE 120
                CI CG C   CP  AI E
Sbjct: 64  ---ELCINCGQCLTHCPSMAIYE 83



 Score = 42.0 bits (97), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
              +ID  KCI C  CQ+ CP  AI  G  FE  T   +EL  +
Sbjct: 26  TFVEIDQEKCIGCDTCQQYCPTGAIY-GETFEPHTIKYRELCIN 68


>gi|315180795|gb|ADT87709.1| electron transport complex protein RnfC [Vibrio furnissii NCTC
           11218]
          Length = 824

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 3/101 (2%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C  C   CPA  +  +               ++++  CI CG C   CP   I    
Sbjct: 378 CIRCGQCADACPAS-LLPQQLYWHSKAEEYDKCEELNLKDCIECGACAYVCP-SEIPLVQ 435

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            +  +    +   ++ E       R+E +  R +  +   R
Sbjct: 436 YYRQSKAEIKNRQWEAEAAERAKLRFEEKKAR-MEREKAER 475



 Score = 33.9 bits (76), Expect = 6.6,   Method: Composition-based stats.
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 99  DMIKCIYCGLCQEACP 114
             + CI CG C +ACP
Sbjct: 374 YEMACIRCGQCADACP 389


>gi|331657598|ref|ZP_08358560.1| electron transport complex protein RnfC [Escherichia coli TA206]
 gi|331055846|gb|EGI27855.1| electron transport complex protein RnfC [Escherichia coli TA206]
          Length = 622

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|307310800|ref|ZP_07590446.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli W]
 gi|306908978|gb|EFN39474.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli W]
          Length = 608

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|301064321|ref|ZP_07204755.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit A family
            protein [delta proteobacterium NaphS2]
 gi|300441600|gb|EFK05931.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit A family
            protein [delta proteobacterium NaphS2]
          Length = 1395

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 22/61 (36%), Gaps = 6/61 (9%)

Query: 57   PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               E  CI C +C   CP  AI +         +R      +    C  CG C  ACP  
Sbjct: 1321 HVNEHYCIGCGMCGDACPYGAIGLVDLETGGQVSR------VQPALCKGCGACAVACPTG 1374

Query: 117  A 117
            A
Sbjct: 1375 A 1375



 Score = 37.4 bits (85), Expect = 0.74,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 15/29 (51%)

Query: 94   VRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            V   ++   CI CG+C +ACP  AI    
Sbjct: 1318 VVSHVNEHYCIGCGMCGDACPYGAIGLVD 1346



 Score = 35.5 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 10/18 (55%), Positives = 10/18 (55%)

Query: 98  IDMIKCIYCGLCQEACPV 115
           ID   C  CG C E CPV
Sbjct: 19  IDPDACTACGDCAEVCPV 36


>gi|260769054|ref|ZP_05877988.1| electron transport complex protein RnfC [Vibrio furnissii CIP
           102972]
 gi|260617084|gb|EEX42269.1| electron transport complex protein RnfC [Vibrio furnissii CIP
           102972]
          Length = 875

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 3/101 (2%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C  C   CPA  +  +               ++++  CI CG C   CP   I    
Sbjct: 378 CIRCGQCADACPAS-LLPQQLYWHSKAEEYDKCEELNLKDCIECGACAYVCP-SEIPLVQ 435

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            +  +    +   ++ E       R+E +  R +  +   R
Sbjct: 436 YYRQSKAEIKNRQWEAEAAERAKLRFEEKKAR-MEREKAER 475



 Score = 33.9 bits (76), Expect = 6.6,   Method: Composition-based stats.
 Identities = 8/16 (50%), Positives = 10/16 (62%)

Query: 99  DMIKCIYCGLCQEACP 114
             + CI CG C +ACP
Sbjct: 374 YEMACIRCGQCADACP 389


>gi|256022710|ref|ZP_05436575.1| electron transport complex protein RnfC [Escherichia sp. 4_1_40B]
          Length = 597

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|237796742|ref|YP_002864294.1| [Fe] hydrogenase [Clostridium botulinum Ba4 str. 657]
 gi|229262438|gb|ACQ53471.1| [Fe] hydrogenase [Clostridium botulinum Ba4 str. 657]
          Length = 497

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 7/69 (10%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIKCIYCGLC 109
              + +C  C LC+ +CP  AI     P                 R  I+   CI CG C
Sbjct: 135 YIDQNKCRECGLCKKVCPYNAIVEVMRPCKKVCPTGALEINPDDKRAMIEKENCINCGAC 194

Query: 110 QEACPVDAI 118
             ACP  AI
Sbjct: 195 MAACPFGAI 203


>gi|168212266|ref|ZP_02637891.1| nitroreductase family protein [Clostridium perfringens CPE str.
           F4969]
 gi|170716002|gb|EDT28184.1| nitroreductase family protein [Clostridium perfringens CPE str.
           F4969]
          Length = 272

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 15/91 (16%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                  +CI C LC   C    I +  G              I    CI CG C   CP
Sbjct: 1   MMNVDTSKCIGCTLCMQDCIVSDIEMVDGKAH-----------IKNKSCIECGHCIAICP 49

Query: 115 VDAIVEGPNFEFA---TETRQELYYDKERLL 142
            +A+ +  +++ +      ++    D +RLL
Sbjct: 50  KEAVSDS-DYDMSKIQEYKKESFDIDSDRLL 79


>gi|169343842|ref|ZP_02864839.1| nitroreductase family protein [Clostridium perfringens C str.
           JGS1495]
 gi|169297962|gb|EDS80053.1| nitroreductase family protein [Clostridium perfringens C str.
           JGS1495]
          Length = 272

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 15/91 (16%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                  +CI C LC   C    I I  G              I    CI CG C   CP
Sbjct: 1   MMNVDTSKCIGCTLCMQDCIVSDIEIVDGKAH-----------IKNESCIECGHCIAICP 49

Query: 115 VDAIVEGPNFEFA---TETRQELYYDKERLL 142
            +A+ +  +++ +      ++    D +RLL
Sbjct: 50  KEAVSDS-DYDMSKIQEYKKESFDIDSDRLL 79


>gi|168179051|ref|ZP_02613715.1| [Fe] hydrogenase [Clostridium botulinum NCTC 2916]
 gi|182670135|gb|EDT82111.1| [Fe] hydrogenase [Clostridium botulinum NCTC 2916]
          Length = 497

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 7/69 (10%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIKCIYCGLC 109
              + +C  C LC+ +CP  AI     P                 R  I+   CI CG C
Sbjct: 135 YIDQNKCRECGLCKKVCPYNAIVEVMRPCKKVCPTGALEINPDDKRAMIEKENCINCGAC 194

Query: 110 QEACPVDAI 118
             ACP  AI
Sbjct: 195 MAACPFGAI 203


>gi|183221787|ref|YP_001839783.1| hydrogenase-4 subunit G [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
 gi|189911861|ref|YP_001963416.1| metal (Ni/Fe) hydrogenase small subunit [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Ames)']
 gi|167776537|gb|ABZ94838.1| Metal (Ni/Fe) hydrogenase, small subunit [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167780209|gb|ABZ98507.1| Hydrogenase-4 subunit G [Leptospira biflexa serovar Patoc strain
           'Patoc 1 (Paris)']
          Length = 273

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/112 (26%), Positives = 41/112 (36%), Gaps = 13/112 (11%)

Query: 24  LRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG 83
            + F   K  +N+  +        RG        N E  C AC  CE+ CP +AI     
Sbjct: 7   FKNFITKKNVLNF-DKVSFVHANNRGIP--TPTKNMENGCGACSECESNCPTKAIQRSGS 63

Query: 84  PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            R           D+D  KC+ CG+C E CP   +            R+E Y
Sbjct: 64  DRL----------DLDYGKCLQCGICVEVCPEGKLRNSGFIYTIALHREEFY 105


>gi|167746890|ref|ZP_02419017.1| hypothetical protein ANACAC_01602 [Anaerostipes caccae DSM 14662]
 gi|167653850|gb|EDR97979.1| hypothetical protein ANACAC_01602 [Anaerostipes caccae DSM 14662]
          Length = 629

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/69 (40%), Positives = 31/69 (44%), Gaps = 10/69 (14%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           ALRR+    ERC  C  C   CPA AI+           R    Y ID  KCI CG C+ 
Sbjct: 569 ALRRFIISPERCKGCSKCARNCPADAISG----------RIKEPYVIDNDKCIKCGACES 618

Query: 112 ACPVDAIVE 120
           AC   AI  
Sbjct: 619 ACAFGAIHI 627


>gi|114328598|ref|YP_745755.1| NAD-dependent formate dehydrogenase alpha subunit (fdsA)
           [Granulibacter bethesdensis CGDNIH1]
 gi|114316772|gb|ABI62832.1| NAD-dependent formate dehydrogenase alpha subunit (fdsA)
           [Granulibacter bethesdensis CGDNIH1]
          Length = 947

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 4/83 (4%)

Query: 55  RYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            +     +CI C  C   C       A+TIE        +      +    +C+ CG C 
Sbjct: 159 YFQYDPSKCIVCNRCVRACEEVQGTFALTIEGRGFESRVSPGAAHDNFFSSECVSCGACV 218

Query: 111 EACPVDAIVEGPNFEFATETRQE 133
           +ACP   ++E    E       E
Sbjct: 219 QACPTATLMEKSVIEIGQPEHSE 241


>gi|66047114|ref|YP_236955.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas
           syringae pv. syringae B728a]
 gi|63257821|gb|AAY38917.1| Electron transport complex, RnfABCDGE type, B subunit [Pseudomonas
           syringae pv. syringae B728a]
          Length = 291

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 10/75 (13%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           RG    +     E  CI C  C   CP  AI   +           + + + + +C  C 
Sbjct: 76  RGTAPAQVAFIREAECIGCTKCIQACPVDAILGAAK----------LMHTVIINECTGCD 125

Query: 108 LCQEACPVDAIVEGP 122
           LC   CPVD I   P
Sbjct: 126 LCIAPCPVDCIEMHP 140


>gi|238785613|ref|ZP_04629592.1| Electron transport complex protein rnfB [Yersinia bercovieri ATCC
           43970]
 gi|238713500|gb|EEQ05533.1| Electron transport complex protein rnfB [Yersinia bercovieri ATCC
           43970]
          Length = 207

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 24/78 (30%), Gaps = 10/78 (12%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C  C   CP  AI   +             + +    C  C LC   CP D
Sbjct: 111 FIDEANCIGCTKCIQACPVDAIVGAT----------RAMHTVLPDLCTGCDLCVAPCPTD 160

Query: 117 AIVEGPNFEFATETRQEL 134
            I   P        + +L
Sbjct: 161 CIEMIPVATTTANWKWDL 178


>gi|110634768|ref|YP_674976.1| formate dehydrogenase, alpha subunit [Mesorhizobium sp. BNC1]
 gi|110285752|gb|ABG63811.1| NAD-dependent formate dehydrogenase catalytic subunit /
           NAD-dependent formate dehydrogenase iron-sulfur protein
           [Chelativorans sp. BNC1]
          Length = 929

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 5/84 (5%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID----MIKCIYCGLCQEACP 114
             + CIAC  C   C  +    +       G      +D+     +  C+ CG C +ACP
Sbjct: 149 NLDACIACGACVRACR-EVQVNDVIGMAERGNHSVPVFDMHDPMGLSTCVTCGECVQACP 207

Query: 115 VDAIVEGPNFEFATETRQELYYDK 138
             A+ E    +   +TR    +DK
Sbjct: 208 TGALFEKSLMDGEGKTRVVQSFDK 231



 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-IDMIKCIYCGL-CQ 110
              P G   C+ C  C   CP  A+  +S       TR    +D +    C +CG+ CQ
Sbjct: 187 MHDPMGLSTCVTCGECVQACPTGALFEKSLMDGEGKTRVVQSFDKVVDSVCPFCGVGCQ 245


>gi|327252745|gb|EGE64399.1| electron transport complex protein rnfC [Escherichia coli STEC_7v]
          Length = 633

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 264 PQEEQNCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 321

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 322 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 370


>gi|323956694|gb|EGB52430.1| electron transporter [Escherichia coli H263]
          Length = 667

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|317133838|ref|YP_004089749.1| hydrogenase large subunit domain protein [Ruminococcus albus 7]
 gi|315450300|gb|ADU23863.1| hydrogenase large subunit domain protein [Ruminococcus albus 7]
          Length = 478

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110
              + +CI C  C  +CP  AIT    P  +    + +  +      ID  KCI CG C 
Sbjct: 126 HIDKSKCIECGRCSKVCPYSAITNRVRPCQNACKIKAISINEDSVAAIDNKKCISCGACV 185

Query: 111 EACPVDAI 118
             CP  AI
Sbjct: 186 YQCPFGAI 193



 Score = 40.9 bits (94), Expect = 0.059,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 12/64 (18%)

Query: 57  PNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
               + C  C    CE +CP  AI+ +     H          ID  KCI CG C + CP
Sbjct: 94  YEVTDSCRGCLAHRCEDVCPRGAISFDHNHVAH----------IDKSKCIECGRCSKVCP 143

Query: 115 VDAI 118
             AI
Sbjct: 144 YSAI 147


>gi|302341854|ref|YP_003806383.1| hypothetical protein Deba_0414 [Desulfarculus baarsii DSM 2075]
 gi|301638467|gb|ADK83789.1| protein of unknown function DUF362 [Desulfarculus baarsii DSM 2075]
          Length = 376

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/80 (31%), Positives = 29/80 (36%), Gaps = 11/80 (13%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100
                R  G   + R       C AC  C AICPA  + +E             R   D 
Sbjct: 294 PPLLARLLGRRLIARPVQEPGLCRACGKCAAICPAGCLRLEG-----------RRASFDH 342

Query: 101 IKCIYCGLCQEACPVDAIVE 120
            +CI C  C E CPV AI  
Sbjct: 343 DRCIRCYCCHEVCPVGAITF 362


>gi|296387989|ref|ZP_06877464.1| electron transport complex protein RnfC [Pseudomonas aeruginosa
           PAb1]
          Length = 656

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 10/97 (10%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            CI C  C  +CP   +  +       G         ++  CI CG C   CP   I   
Sbjct: 368 PCIRCGDCARVCPVS-LLPQQLHFFALGDEHEQLLAHNLFDCIECGACAYVCP-SGIPLV 425

Query: 122 PNFEFAT-ETRQELYYDKERLL---NNGDRWESEIVR 154
             +  +  E R++    +++LL    + +R+E    R
Sbjct: 426 QYYRASKAEIREQ----RQKLLKAEQSRERFEQRQAR 458



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 18/54 (33%), Gaps = 17/54 (31%)

Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNI 156
           CI CG C   CPV  + +  +F                    GD  E  +  N+
Sbjct: 369 CIRCGDCARVCPVSLLPQQLHF-----------------FALGDEHEQLLAHNL 405


>gi|291515602|emb|CBK64812.1| Nitroreductase [Alistipes shahii WAL 8301]
          Length = 287

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 8/62 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +  CI C  C  +CP+Q    E         +           CI CG C  ACP  ++
Sbjct: 7   NDASCIRCGRCVKVCPSQIFVQEKAGGDVTLHK--------PENCILCGHCVAACPTGSV 58

Query: 119 VE 120
             
Sbjct: 59  NH 60


>gi|260769686|ref|ZP_05878619.1| formate dehydrogenase-O major subunit [Vibrio furnissii CIP 102972]
 gi|260615024|gb|EEX40210.1| formate dehydrogenase-O major subunit [Vibrio furnissii CIP 102972]
          Length = 1376

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 7/64 (10%)

Query: 59  GEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
              RCI+C  C   C       A+              T+  D     C+ CG C + CP
Sbjct: 613 DANRCISCGACVQTCQEETVHGALHFSHSQNRPMFHDGTLMGD---SNCVQCGACVQVCP 669

Query: 115 VDAI 118
             A+
Sbjct: 670 TGAL 673


>gi|255008332|ref|ZP_05280458.1| putative dehydrogenase [Bacteroides fragilis 3_1_12]
 gi|313146055|ref|ZP_07808248.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Bacteroides fragilis 3_1_12]
 gi|313134822|gb|EFR52182.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Bacteroides fragilis 3_1_12]
          Length = 607

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 8/74 (10%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                 +  C  C  C  +C   AIT ++              +ID  KC  CGLC++ C
Sbjct: 1   MINITDKSECCGCNACGDVCAHNAITFKTDIEGFWYP------EIDKDKCTDCGLCEKVC 54

Query: 114 PVDAIVE--GPNFE 125
           P+  I E    +FE
Sbjct: 55  PIVNIEELKKNDFE 68


>gi|212704112|ref|ZP_03312240.1| hypothetical protein DESPIG_02167 [Desulfovibrio piger ATCC 29098]
 gi|212672472|gb|EEB32955.1| hypothetical protein DESPIG_02167 [Desulfovibrio piger ATCC 29098]
          Length = 1182

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/116 (18%), Positives = 30/116 (25%), Gaps = 22/116 (18%)

Query: 29  KAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC 86
           K   +   P        +   +   A+       + CI C  C  +CP  AI        
Sbjct: 651 KLPVSAMEPAGIMPLGTAACEKRGVAINVPEWVADNCIQCCQCSFVCPHAAIRPVVANDE 710

Query: 87  HDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV----DAIVEGP 122
                                   R  +    C+ CG C E CP      A+   P
Sbjct: 711 ELAGAPESFVTVPAKGKELTGMKFRMQVYAEDCLGCGSCVEVCPTKPEKRALSMKP 766


>gi|163747832|ref|ZP_02155170.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Oceanibulbus
           indolifex HEL-45]
 gi|161378904|gb|EDQ03335.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Oceanibulbus
           indolifex HEL-45]
          Length = 654

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 9/82 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++ C  C  C ++CP+ A+                +       C+ CGLC+  CP DAI
Sbjct: 503 DKDACTLCLSCVSLCPSGALGDNPD---------LPQLRFQEDACLQCGLCEHICPEDAI 553

Query: 119 VEGPNFEFATETRQELYYDKER 140
              P  +       +   ++E 
Sbjct: 554 TLAPQLDLTDAALSQRILNEEE 575



 Score = 38.5 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 11/55 (20%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             C  C  +CP  AI  +                +D + C  CG C  ACP  AI
Sbjct: 282 TGCTACLDLCPTGAIVPDGD-----------HVTVDPMICAGCGACSSACPSGAI 325


>gi|90412116|ref|ZP_01220122.1| electron transport complex protein RnfC [Photobacterium profundum
           3TCK]
 gi|90326840|gb|EAS43225.1| electron transport complex protein RnfC [Photobacterium profundum
           3TCK]
          Length = 930

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/155 (18%), Positives = 48/155 (30%), Gaps = 23/155 (14%)

Query: 16  FVGA--FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +G       L +        + P  K +          L  + +    CI C  C   C
Sbjct: 338 IIGGSLMGFTLPH-------ADVPVTKVTNCILAPKRKELPLHTHEMA-CIRCTACAEAC 389

Query: 74  PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF-----EFAT 128
           PA  +  +               + ++  CI CG C   CP   I     +     E   
Sbjct: 390 PAS-LLPQQLQWYAKDQDYAKCEEYNLFDCIECGACAYVCP-SEIPLVQYYRQAKSEITA 447

Query: 129 ETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
             + E   ++ RL     R+E++  R +  D   R
Sbjct: 448 RKQDEANAERARL-----RFEAKNAR-MERDKAER 476


>gi|29345535|ref|NP_809038.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|253571682|ref|ZP_04849088.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 1_1_6]
 gi|29337427|gb|AAO75232.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|251838890|gb|EES66975.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 1_1_6]
          Length = 635

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 26/66 (39%), Gaps = 10/66 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L  Y    E CI C LC   CPA AI+                + I   KCI CG+C   
Sbjct: 577 LLTYTINPELCIGCHLCAKNCPADAISGL----------VRKPHVIHPEKCIKCGMCMAR 626

Query: 113 CPVDAI 118
           C   AI
Sbjct: 627 CKFKAI 632


>gi|330830388|ref|YP_004393340.1| ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin
           oxidoreductase [Aeromonas veronii B565]
 gi|328805524|gb|AEB50723.1| ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin
           oxidoreductase [Aeromonas veronii B565]
          Length = 1191

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 29/101 (28%), Gaps = 24/101 (23%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR------- 85
           T    FEK   +      H         + CI C  C  +CP  A+  +   +       
Sbjct: 672 TATSRFEKRDIAREIPIWH--------SDICIQCGNCVFVCPHAALRAKFYHQDWLATAP 723

Query: 86  ---------CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
                                +    C  CG C +ACPV A
Sbjct: 724 EAAQSVPVTAKGFPDSRYTLQLYPEDCTGCGQCVQACPVRA 764



 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 8/20 (40%), Positives = 9/20 (45%)

Query: 99  DMIKCIYCGLCQEACPVDAI 118
               CI CG C   CP  A+
Sbjct: 690 HSDICIQCGNCVFVCPHAAL 709


>gi|327334732|gb|EGE76443.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL097PA1]
          Length = 1204

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 20/75 (26%), Gaps = 16/75 (21%)

Query: 58  NGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTVRYDIDMI 101
                CI C  C  +CP   I                   +               +   
Sbjct: 693 WEPNACIQCGNCAFVCPHGVIRSKYYPQSQLEGAPESFQSAELNAAGLPESCYTLQVVPD 752

Query: 102 KCIYCGLCQEACPVD 116
           +C  CGLC EACP  
Sbjct: 753 QCTGCGLCVEACPAH 767



 Score = 34.7 bits (78), Expect = 4.3,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 8/19 (42%)

Query: 100 MIKCIYCGLCQEACPVDAI 118
              CI CG C   CP   I
Sbjct: 695 PNACIQCGNCAFVCPHGVI 713


>gi|327329119|gb|EGE70879.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL103PA1]
          Length = 1204

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 20/75 (26%), Gaps = 16/75 (21%)

Query: 58  NGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTVRYDIDMI 101
                CI C  C  +CP   I                   +               +   
Sbjct: 693 WEPNACIQCGNCAFVCPHGVIRSKYYPQSQLEGAPESFQSAELNAAGLPESCYTLQVVPD 752

Query: 102 KCIYCGLCQEACPVD 116
           +C  CGLC EACP  
Sbjct: 753 QCTGCGLCVEACPAH 767



 Score = 34.7 bits (78), Expect = 4.3,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 8/19 (42%)

Query: 100 MIKCIYCGLCQEACPVDAI 118
              CI CG C   CP   I
Sbjct: 695 PNACIQCGNCAFVCPHGVI 713


>gi|320352154|ref|YP_004193493.1| CoB--CoM heterodisulfide reductase subunit A [Desulfobulbus
           propionicus DSM 2032]
 gi|320120656|gb|ADW16202.1| CoB--CoM heterodisulfide reductase subunit A [Desulfobulbus
           propionicus DSM 2032]
          Length = 669

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 7/67 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +E C  C +C  +CP  AI+++             R  I+M  C  CG+C  ACP  AI
Sbjct: 598 HQEICSGCGICVPLCPYHAISMQPSDNGP-------RARIEMSACKGCGVCTSACPSGAI 650

Query: 119 VEGPNFE 125
           V     E
Sbjct: 651 VLHGYEE 657



 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 12/26 (46%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGP 122
           ++    C  CG+C   CP  AI   P
Sbjct: 596 EVHQEICSGCGICVPLCPYHAISMQP 621



 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 33/114 (28%), Gaps = 27/114 (23%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH-------DGTRRTVRYDI 98
            F+ +   ++      +C  C  C + CPA+     +                   +  I
Sbjct: 227 NFKVKVRRKQTYVDWNKCTGCGDCASKCPAKTPDEFNAGLSDRRAAFIMFPQAVPKKAVI 286

Query: 99  DMIKCIYCGL--------------------CQEACPVDAIVEGPNFEFATETRQ 132
           D+  CI C                      C+ ACP +AI      +     R+
Sbjct: 287 DIDHCINCAGREIGTQPKSNQKTGRPILAPCERACPAEAINRSLAHDPNGTIRE 340


>gi|315286322|gb|EFU45758.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 110-3]
          Length = 644

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|315078795|gb|EFT50817.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL053PA2]
          Length = 1204

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 20/75 (26%), Gaps = 16/75 (21%)

Query: 58  NGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTVRYDIDMI 101
                CI C  C  +CP   I                   +               +   
Sbjct: 693 WEPNACIQCGNCAFVCPHGVIRSKYYPQSQLEGAPESFQSAELNAAGLPESCYTLQVVPD 752

Query: 102 KCIYCGLCQEACPVD 116
           +C  CGLC EACP  
Sbjct: 753 QCTGCGLCVEACPAH 767



 Score = 34.7 bits (78), Expect = 4.3,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 8/19 (42%)

Query: 100 MIKCIYCGLCQEACPVDAI 118
              CI CG C   CP   I
Sbjct: 695 PNACIQCGNCAFVCPHGVI 713


>gi|314959338|gb|EFT03440.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL002PA1]
          Length = 1022

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 20/75 (26%), Gaps = 16/75 (21%)

Query: 58  NGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTVRYDIDMI 101
                CI C  C  +CP   I                   +               +   
Sbjct: 693 WEPNACIQCGNCAFVCPHGVIRSKYYPQSQLEGAPESFQSAELNAAGLPESCYTLQVVPD 752

Query: 102 KCIYCGLCQEACPVD 116
           +C  CGLC EACP  
Sbjct: 753 QCTGCGLCVEACPAH 767



 Score = 34.7 bits (78), Expect = 4.3,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 8/19 (42%)

Query: 100 MIKCIYCGLCQEACPVDAI 118
              CI CG C   CP   I
Sbjct: 695 PNACIQCGNCAFVCPHGVI 713


>gi|314930739|gb|EFS94570.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL067PA1]
          Length = 1204

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 20/75 (26%), Gaps = 16/75 (21%)

Query: 58  NGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTVRYDIDMI 101
                CI C  C  +CP   I                   +               +   
Sbjct: 693 WEPNACIQCGNCAFVCPHGVIRSKYYPQSQLEGAPESFQSAELNAAGLPESCYTLQVVPD 752

Query: 102 KCIYCGLCQEACPVD 116
           +C  CGLC EACP  
Sbjct: 753 QCTGCGLCVEACPAH 767



 Score = 34.7 bits (78), Expect = 4.3,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 8/19 (42%)

Query: 100 MIKCIYCGLCQEACPVDAI 118
              CI CG C   CP   I
Sbjct: 695 PNACIQCGNCAFVCPHGVI 713


>gi|314926391|gb|EFS90222.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL036PA3]
          Length = 1204

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 20/75 (26%), Gaps = 16/75 (21%)

Query: 58  NGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTVRYDIDMI 101
                CI C  C  +CP   I                   +               +   
Sbjct: 693 WEPNACIQCGNCAFVCPHGVIRSKYYPQSQLEGAPESFQSAELNAAGLPESCYTLQVVPD 752

Query: 102 KCIYCGLCQEACPVD 116
           +C  CGLC EACP  
Sbjct: 753 QCTGCGLCVEACPAH 767



 Score = 34.7 bits (78), Expect = 4.3,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 8/19 (42%)

Query: 100 MIKCIYCGLCQEACPVDAI 118
              CI CG C   CP   I
Sbjct: 695 PNACIQCGNCAFVCPHGVI 713


>gi|313828940|gb|EFS66654.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL063PA2]
 gi|314922499|gb|EFS86330.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL001PA1]
 gi|314965576|gb|EFT09675.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL082PA2]
 gi|314969208|gb|EFT13306.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL037PA1]
 gi|315094327|gb|EFT66303.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL060PA1]
 gi|315105051|gb|EFT77027.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL050PA2]
 gi|315109949|gb|EFT81925.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL030PA2]
          Length = 1204

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 20/75 (26%), Gaps = 16/75 (21%)

Query: 58  NGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTVRYDIDMI 101
                CI C  C  +CP   I                   +               +   
Sbjct: 693 WEPNACIQCGNCAFVCPHGVIRSKYYPQSQLEGAPESFQSAELNAAGLPESCYTLQVVPD 752

Query: 102 KCIYCGLCQEACPVD 116
           +C  CGLC EACP  
Sbjct: 753 QCTGCGLCVEACPAH 767



 Score = 34.7 bits (78), Expect = 4.3,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 8/19 (42%)

Query: 100 MIKCIYCGLCQEACPVDAI 118
              CI CG C   CP   I
Sbjct: 695 PNACIQCGNCAFVCPHGVI 713


>gi|313826367|gb|EFS64081.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL063PA1]
          Length = 1204

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 20/75 (26%), Gaps = 16/75 (21%)

Query: 58  NGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTVRYDIDMI 101
                CI C  C  +CP   I                   +               +   
Sbjct: 693 WEPNACIQCGNCAFVCPHGVIRSKYYPQSQLEGAPESFQSAELNAAGLPESCYTLQVVPD 752

Query: 102 KCIYCGLCQEACPVD 116
           +C  CGLC EACP  
Sbjct: 753 QCTGCGLCVEACPAH 767



 Score = 34.7 bits (78), Expect = 4.3,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 8/19 (42%)

Query: 100 MIKCIYCGLCQEACPVDAI 118
              CI CG C   CP   I
Sbjct: 695 PNACIQCGNCAFVCPHGVI 713


>gi|313815600|gb|EFS53314.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL059PA1]
 gi|314916398|gb|EFS80229.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL005PA4]
 gi|314917238|gb|EFS81069.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL050PA1]
 gi|314921613|gb|EFS85444.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL050PA3]
 gi|314955141|gb|EFS99546.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL027PA1]
 gi|315099590|gb|EFT71566.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL059PA2]
 gi|315102179|gb|EFT74155.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL046PA1]
 gi|327454430|gb|EGF01085.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL087PA3]
 gi|327456497|gb|EGF03152.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL083PA2]
 gi|328756190|gb|EGF69806.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL087PA1]
 gi|328758572|gb|EGF72188.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL025PA2]
          Length = 1204

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 20/75 (26%), Gaps = 16/75 (21%)

Query: 58  NGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTVRYDIDMI 101
                CI C  C  +CP   I                   +               +   
Sbjct: 693 WEPNACIQCGNCAFVCPHGVIRSKYYPQSQLEGAPESFQSAELNAAGLPESCYTLQVVPD 752

Query: 102 KCIYCGLCQEACPVD 116
           +C  CGLC EACP  
Sbjct: 753 QCTGCGLCVEACPAH 767



 Score = 34.7 bits (78), Expect = 4.3,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 8/19 (42%)

Query: 100 MIKCIYCGLCQEACPVDAI 118
              CI CG C   CP   I
Sbjct: 695 PNACIQCGNCAFVCPHGVI 713


>gi|313814048|gb|EFS51762.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL025PA1]
          Length = 1204

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 20/75 (26%), Gaps = 16/75 (21%)

Query: 58  NGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTVRYDIDMI 101
                CI C  C  +CP   I                   +               +   
Sbjct: 693 WEPNACIQCGNCAFVCPHGVIRSKYYPQSQLEGAPESFQSAELNAAGLPESCYTLQVVPD 752

Query: 102 KCIYCGLCQEACPVD 116
           +C  CGLC EACP  
Sbjct: 753 QCTGCGLCVEACPAH 767



 Score = 34.7 bits (78), Expect = 4.3,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 8/19 (42%)

Query: 100 MIKCIYCGLCQEACPVDAI 118
              CI CG C   CP   I
Sbjct: 695 PNACIQCGNCAFVCPHGVI 713


>gi|313764838|gb|EFS36202.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL013PA1]
          Length = 1204

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 20/75 (26%), Gaps = 16/75 (21%)

Query: 58  NGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTVRYDIDMI 101
                CI C  C  +CP   I                   +               +   
Sbjct: 693 WEPNACIQCGNCAFVCPHGVIRSKYYPQSQLEGAPESFQSAELNAAGLPESCYTLQVVPD 752

Query: 102 KCIYCGLCQEACPVD 116
           +C  CGLC EACP  
Sbjct: 753 QCTGCGLCVEACPAH 767



 Score = 34.7 bits (78), Expect = 4.3,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 8/19 (42%)

Query: 100 MIKCIYCGLCQEACPVDAI 118
              CI CG C   CP   I
Sbjct: 695 PNACIQCGNCAFVCPHGVI 713


>gi|295110158|emb|CBL24111.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Ruminococcus obeum A2-162]
          Length = 623

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 10/68 (14%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           ALR++    E CI C  C   CPA AI+           +    Y ID   CI CG C++
Sbjct: 563 ALRQFHINPEFCIGCGKCAKNCPAAAIS----------GKIKHPYHIDNELCIKCGTCKD 612

Query: 112 ACPVDAIV 119
            C  DAI 
Sbjct: 613 NCNFDAIY 620



 Score = 38.9 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 15/40 (37%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            I              ++ I+   CI CG C + CP  AI
Sbjct: 550 HIRDKKCRAKVCTALRQFHINPEFCIGCGKCAKNCPAAAI 589


>gi|294056366|ref|YP_003550024.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Coraliomargarita
           akajimensis DSM 45221]
 gi|293615699|gb|ADE55854.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Coraliomargarita
           akajimensis DSM 45221]
          Length = 1193

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 35/110 (31%), Gaps = 22/110 (20%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIE--------------SGPRCHDGTRRT 93
           RG  A     N  + C  C  C  ICP  AI  +                   ++     
Sbjct: 686 RGMAAEVPVWN-PDLCTQCNKCATICPHAAIRPKFYDKELAQSAPDSFKSMDFNNPAYPD 744

Query: 94  VRYDID--MIKCIYCGLCQEACPV-----DAIVEGPNFEFATETRQELYY 136
            +Y I      C  CG+C E CP       A+V  P  +     R+   Y
Sbjct: 745 TKYTIQLSPDDCTGCGVCAEMCPGADGDIRALVMQPTGDVVEAEREAYAY 794


>gi|289427517|ref|ZP_06429230.1| pyruvate synthase [Propionibacterium acnes J165]
 gi|289159447|gb|EFD07638.1| pyruvate synthase [Propionibacterium acnes J165]
 gi|313807033|gb|EFS45531.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL087PA2]
 gi|313817818|gb|EFS55532.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL046PA2]
 gi|313821356|gb|EFS59070.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL036PA1]
 gi|313824703|gb|EFS62417.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL036PA2]
 gi|314961510|gb|EFT05611.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL002PA2]
 gi|314980077|gb|EFT24171.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL072PA2]
 gi|314986931|gb|EFT31023.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL005PA2]
 gi|314990576|gb|EFT34667.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL005PA3]
 gi|315082954|gb|EFT54930.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL027PA2]
 gi|315086474|gb|EFT58450.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL002PA3]
 gi|315088188|gb|EFT60164.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL072PA1]
 gi|327333849|gb|EGE75566.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL096PA3]
 gi|327444682|gb|EGE91336.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL013PA2]
 gi|328758187|gb|EGF71803.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL020PA1]
 gi|332674563|gb|AEE71379.1| pyruvate-flavodoxin oxidoreductase [Propionibacterium acnes 266]
          Length = 1204

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 20/75 (26%), Gaps = 16/75 (21%)

Query: 58  NGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTVRYDIDMI 101
                CI C  C  +CP   I                   +               +   
Sbjct: 693 WEPNACIQCGNCAFVCPHGVIRSKYYPQSQLEGAPESFQSAELNAAGLPESCYTLQVVPD 752

Query: 102 KCIYCGLCQEACPVD 116
           +C  CGLC EACP  
Sbjct: 753 QCTGCGLCVEACPAH 767



 Score = 34.7 bits (78), Expect = 4.3,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 8/19 (42%)

Query: 100 MIKCIYCGLCQEACPVDAI 118
              CI CG C   CP   I
Sbjct: 695 PNACIQCGNCAFVCPHGVI 713


>gi|289424274|ref|ZP_06426057.1| pyruvate synthase [Propionibacterium acnes SK187]
 gi|289154971|gb|EFD03653.1| pyruvate synthase [Propionibacterium acnes SK187]
          Length = 1204

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 20/75 (26%), Gaps = 16/75 (21%)

Query: 58  NGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTVRYDIDMI 101
                CI C  C  +CP   I                   +               +   
Sbjct: 693 WEPNACIQCGNCAFVCPHGVIRSKYYPQSQLEGAPESFQSAELNAAGLPESCYTLQVVPD 752

Query: 102 KCIYCGLCQEACPVD 116
           +C  CGLC EACP  
Sbjct: 753 QCTGCGLCVEACPAH 767



 Score = 34.7 bits (78), Expect = 4.3,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 8/19 (42%)

Query: 100 MIKCIYCGLCQEACPVDAI 118
              CI CG C   CP   I
Sbjct: 695 PNACIQCGNCAFVCPHGVI 713


>gi|282853211|ref|ZP_06262548.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes J139]
 gi|282582664|gb|EFB88044.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes J139]
 gi|314982738|gb|EFT26830.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL110PA3]
 gi|315091392|gb|EFT63368.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL110PA4]
          Length = 1204

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 20/75 (26%), Gaps = 16/75 (21%)

Query: 58  NGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTVRYDIDMI 101
                CI C  C  +CP   I                   +               +   
Sbjct: 693 WEPNACIQCGNCAFVCPHGVIRSKYYPQSQLESAPESFQSAELNAAGLPESCYTLQVVPD 752

Query: 102 KCIYCGLCQEACPVD 116
           +C  CGLC EACP  
Sbjct: 753 QCTGCGLCVEACPAH 767



 Score = 34.7 bits (78), Expect = 4.3,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 8/19 (42%)

Query: 100 MIKCIYCGLCQEACPVDAI 118
              CI CG C   CP   I
Sbjct: 695 PNACIQCGNCAFVCPHGVI 713


>gi|237731408|ref|ZP_04561889.1| electron transport complex protein RnfB [Citrobacter sp. 30_2]
 gi|226906947|gb|EEH92865.1| electron transport complex protein RnfB [Citrobacter sp. 30_2]
          Length = 169

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   +             + +    C  C LC + CP   I
Sbjct: 90  DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTQCI 139

Query: 119 VEGPNFEFATETRQEL 134
              P  E     + +L
Sbjct: 140 ELRPVAETPDSWKWDL 155



 Score = 35.1 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C  C +ACPVDAI
Sbjct: 89  IDENNCIGCTKCIQACPVDAI 109


>gi|295129727|ref|YP_003580390.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes SK137]
 gi|291376756|gb|ADE00611.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes SK137]
 gi|313772691|gb|EFS38657.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL074PA1]
 gi|313811172|gb|EFS48886.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL083PA1]
 gi|313832173|gb|EFS69887.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL007PA1]
 gi|313834334|gb|EFS72048.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL056PA1]
 gi|313839447|gb|EFS77161.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL086PA1]
 gi|314974431|gb|EFT18526.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL053PA1]
 gi|314977380|gb|EFT21475.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL045PA1]
 gi|314985427|gb|EFT29519.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL005PA1]
 gi|315097262|gb|EFT69238.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL038PA1]
 gi|327331223|gb|EGE72962.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL096PA2]
 gi|327447404|gb|EGE94058.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL043PA1]
 gi|327450411|gb|EGE97065.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL043PA2]
 gi|328759537|gb|EGF73143.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL099PA1]
          Length = 1204

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 20/75 (26%), Gaps = 16/75 (21%)

Query: 58  NGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTVRYDIDMI 101
                CI C  C  +CP   I                   +               +   
Sbjct: 693 WEPNACIQCGNCAFVCPHGVIRSKYYPQSQLEGAPESFQSAELNAAGLPESCYTLQVVPD 752

Query: 102 KCIYCGLCQEACPVD 116
           +C  CGLC EACP  
Sbjct: 753 QCTGCGLCVEACPAH 767



 Score = 34.7 bits (78), Expect = 4.3,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 8/19 (42%)

Query: 100 MIKCIYCGLCQEACPVDAI 118
              CI CG C   CP   I
Sbjct: 695 PNACIQCGNCAFVCPHGVI 713


>gi|153932223|ref|YP_001385620.1| [Fe] hydrogenase [Clostridium botulinum A str. ATCC 19397]
 gi|153936790|ref|YP_001389026.1| [Fe] hydrogenase [Clostridium botulinum A str. Hall]
 gi|152928267|gb|ABS33767.1| [Fe] hydrogenase [Clostridium botulinum A str. ATCC 19397]
 gi|152932704|gb|ABS38203.1| [Fe] hydrogenase [Clostridium botulinum A str. Hall]
          Length = 497

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 7/69 (10%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIKCIYCGLC 109
              + +C  C LC+ +CP  AI     P                 R  I+   CI CG C
Sbjct: 135 YIDQNKCRECGLCKKVCPYNAIVEVMRPCKKVCPTGALEINPDDKRAMIEKENCINCGAC 194

Query: 110 QEACPVDAI 118
             ACP  AI
Sbjct: 195 MAACPFGAI 203


>gi|150398828|ref|YP_001322595.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus vannielii SB]
 gi|150011531|gb|ABR53983.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           vannielii SB]
          Length = 397

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 27/66 (40%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
             EE+C+ C  C   CP +AI + +       ++           CI CG C + CP  A
Sbjct: 265 WDEEKCVYCGPCAIKCPNKAIAVVNPKGLEIPSKLKTEKQNQFRMCIRCGACVQICPTGA 324

Query: 118 IVEGPN 123
           +  G  
Sbjct: 325 LRLGKI 330



 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++ CI C +C   CP  AI   +G +     ++ +++D+D   CI CG C + CP + I
Sbjct: 160 DKKSCIYCSICAQTCPWNAIF-VAGKKSPKRDKKIIKFDVDDELCIGCGDCTDKCPRNLI 218



 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 3/65 (4%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            N    CI C  C  ICP  A+ +    + +   +   R +     C  CG C E CP D
Sbjct: 304 QNQFRMCIRCGACVQICPTGALRL---GKINHKGKDYDRIEFSPSLCNNCGKCIETCPYD 360

Query: 117 AIVEG 121
            +   
Sbjct: 361 ILKLT 365



 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 3/76 (3%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID-MIKCIYCGLCQEACPVDAIVE 120
            C+ C  C  ICP   + +E             +  I     C+ CG+C   CPV +I  
Sbjct: 93  FCVGCTKCVDICPDDYVGMEGIIEPAKRNFVIPKEPIVVTDTCVGCGICVPECPVASISL 152

Query: 121 GPNFEFATETRQELYY 136
               E A   ++   Y
Sbjct: 153 EN--EKAVVDKKSCIY 166



 Score = 38.5 bits (88), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           N  + C  C  C ++CP  A+ +          ++  + +    KC  CG C + CP
Sbjct: 27  NPLKVCQLCGKCTSVCPNDALHLRE---IELSGKKIKQIEYKPTKCNLCGECVKVCP 80



 Score = 35.1 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 13/91 (14%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             + ++   +E CI C  C            +     +         I    C  CGLC 
Sbjct: 191 KKIIKFDVDDELCIGCGDC------------TDKCPRNLIVVKDMVAIPPKGCPACGLCV 238

Query: 111 EACPVDAIVEGPNFEFATE-TRQELYYDKER 140
             CPVDA+     +  A   T + + +D+E+
Sbjct: 239 STCPVDAVDLKVEYGQAKPATSEGIIWDEEK 269


>gi|2340933|emb|CAA74952.1| hypothetical protein [Methanosarcina mazei]
          Length = 190

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 8/69 (11%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
             Y    ++C  C+ C           E+ P      +  V   ID++KC  CG+C+E C
Sbjct: 95  MPYNIDRKQCKHCETC--------PPRENCPHEAISEKNGVTDQIDLLKCKGCGICKELC 146

Query: 114 PVDAIVEGP 122
           P +AI  GP
Sbjct: 147 PYNAIKGGP 155


>gi|50841650|ref|YP_054877.1| pyruvate-flavodoxin oxidoreductase [Propionibacterium acnes
           KPA171202]
 gi|50839252|gb|AAT81919.1| pyruvate-flavodoxin oxidoreductase [Propionibacterium acnes
           KPA171202]
 gi|313792725|gb|EFS40806.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL110PA1]
 gi|313803389|gb|EFS44571.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL110PA2]
 gi|314964099|gb|EFT08199.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL082PA1]
 gi|315081730|gb|EFT53706.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL078PA1]
 gi|315107546|gb|EFT79522.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL030PA1]
 gi|327457234|gb|EGF03889.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium
           acnes HL092PA1]
          Length = 1204

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 20/75 (26%), Gaps = 16/75 (21%)

Query: 58  NGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTVRYDIDMI 101
                CI C  C  +CP   I                   +               +   
Sbjct: 693 WEPNACIQCGNCAFVCPHGVIRSKYYPQSQLEGAPESFQSAELNAAGLPESCYTLQVVPD 752

Query: 102 KCIYCGLCQEACPVD 116
           +C  CGLC EACP  
Sbjct: 753 QCTGCGLCVEACPAH 767



 Score = 34.7 bits (78), Expect = 4.3,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 8/19 (42%)

Query: 100 MIKCIYCGLCQEACPVDAI 118
              CI CG C   CP   I
Sbjct: 695 PNACIQCGNCAFVCPHGVI 713


>gi|62289276|ref|YP_221069.1| dihydropyrimidine dehydrogenase [Brucella abortus bv. 1 str. 9-941]
 gi|82699207|ref|YP_413781.1| dihydropyrimidine dehydrogenase [Brucella melitensis biovar Abortus
           2308]
 gi|189023530|ref|YP_001934298.1| dihydropyrimidine dehydrogenase [Brucella abortus S19]
 gi|237814768|ref|ZP_04593766.1| dihydroorotate dehydrogenase family protein [Brucella abortus str.
           2308 A]
 gi|254696719|ref|ZP_05158547.1| dihydropyrimidine dehydrogenase [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254729629|ref|ZP_05188207.1| dihydropyrimidine dehydrogenase [Brucella abortus bv. 4 str. 292]
 gi|256060433|ref|ZP_05450604.1| dihydropyrimidine dehydrogenase [Brucella neotomae 5K33]
 gi|256256844|ref|ZP_05462380.1| dihydropyrimidine dehydrogenase [Brucella abortus bv. 9 str. C68]
 gi|260545967|ref|ZP_05821708.1| dihydropyrimidine dehydrogenase [Brucella abortus NCTC 8038]
 gi|260757288|ref|ZP_05869636.1| dihydropyrimidine dehydrogenase [Brucella abortus bv. 4 str. 292]
 gi|260761110|ref|ZP_05873453.1| dihydropyrimidine dehydrogenase [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260883093|ref|ZP_05894707.1| dihydropyrimidine dehydrogenase [Brucella abortus bv. 9 str. C68]
 gi|261324422|ref|ZP_05963619.1| dihydropyrimidine dehydrogenase [Brucella neotomae 5K33]
 gi|297247693|ref|ZP_06931411.1| dihydropyrimidine dehydrogenase (NADP+) [Brucella abortus bv. 5
           str. B3196]
 gi|62195408|gb|AAX73708.1| dihydroorotate dehydrogenase family protein [Brucella abortus bv. 1
           str. 9-941]
 gi|82615308|emb|CAJ10269.1| Legume lectin, beta domain:Dihydroorotate dehydrogenase:4Fe-4S
           ferredoxin, iron-sulfur binding domain:FMN/related
           compound-bi [Brucella melitensis biovar Abortus 2308]
 gi|189019102|gb|ACD71824.1| dihydropyrimidine dehydrogenase [Brucella abortus S19]
 gi|237789605|gb|EEP63815.1| dihydroorotate dehydrogenase family protein [Brucella abortus str.
           2308 A]
 gi|260097374|gb|EEW81249.1| dihydropyrimidine dehydrogenase [Brucella abortus NCTC 8038]
 gi|260667606|gb|EEX54546.1| dihydropyrimidine dehydrogenase [Brucella abortus bv. 4 str. 292]
 gi|260671542|gb|EEX58363.1| dihydropyrimidine dehydrogenase [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260872621|gb|EEX79690.1| dihydropyrimidine dehydrogenase [Brucella abortus bv. 9 str. C68]
 gi|261300402|gb|EEY03899.1| dihydropyrimidine dehydrogenase [Brucella neotomae 5K33]
 gi|297174862|gb|EFH34209.1| dihydropyrimidine dehydrogenase (NADP+) [Brucella abortus bv. 5
           str. B3196]
          Length = 436

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 6/79 (7%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI C  C       A    S             +++   +C+ 
Sbjct: 330 QYLNLNYVTKARINQDLCIQCGRCHI-----ACEDTSHQAITAMVNGARHFEVIDEECVG 384

Query: 106 CGLCQEACPV-DAIVEGPN 123
           C LC   CPV + I     
Sbjct: 385 CNLCVNVCPVENCITMEQI 403


>gi|317125325|ref|YP_004099437.1| formate dehydrogenase subunit alpha [Intrasporangium calvum DSM
           43043]
 gi|315589413|gb|ADU48710.1| formate dehydrogenase alpha subunit [Intrasporangium calvum DSM
           43043]
          Length = 947

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 26/81 (32%), Gaps = 3/81 (3%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +    + CI C  C   C     T      G                  +C+ CG C +
Sbjct: 167 YFAYDPKACIVCSRCVRACAEVQGTFALTVEGRGFDSRITAGGAPSFLESECVSCGACVQ 226

Query: 112 ACPVDAIVEGPNFEFATETRQ 132
           ACP DA+ E    E    TR 
Sbjct: 227 ACPTDALTEKSVIELGMPTRS 247


>gi|301647804|ref|ZP_07247591.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 146-1]
 gi|301074064|gb|EFK88870.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 146-1]
          Length = 665

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 264 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 321

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 322 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 370


>gi|254718477|ref|ZP_05180288.1| dihydropyrimidine dehydrogenase [Brucella sp. 83/13]
 gi|265983446|ref|ZP_06096181.1| dihydropyrimidine dehydrogenase [Brucella sp. 83/13]
 gi|306838284|ref|ZP_07471130.1| dihydroorotate dehydrogenase family protein [Brucella sp. NF 2653]
 gi|264662038|gb|EEZ32299.1| dihydropyrimidine dehydrogenase [Brucella sp. 83/13]
 gi|306406575|gb|EFM62808.1| dihydroorotate dehydrogenase family protein [Brucella sp. NF 2653]
          Length = 436

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 6/79 (7%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI C  C       A    S             +++   +C+ 
Sbjct: 330 QYLNLNYVTKARINQDLCIQCGRCHI-----ACEDTSHQAITAMVNGARHFEVIDEECVG 384

Query: 106 CGLCQEACPV-DAIVEGPN 123
           C LC   CPV + I     
Sbjct: 385 CNLCVNVCPVENCITMEQI 403


>gi|239628768|ref|ZP_04671799.1| nitroreductase family protein fused to ferredoxin domain
           [Clostridiales bacterium 1_7_47_FAA]
 gi|239518914|gb|EEQ58780.1| nitroreductase family protein fused to ferredoxin domain
           [Clostridiales bacterium 1_7_47FAA]
          Length = 277

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 15/76 (19%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++ CI C  C A C A +++IE       G             C+ CG C   CPV A+
Sbjct: 22  DKDACIGCGRCVADCIANSLSIEDNKAQSSGN------------CLLCGHCVAVCPVSAV 69

Query: 119 VEGPNFEFATETRQEL 134
              P ++   E  +EL
Sbjct: 70  SI-PEYDM--EDVEEL 82


>gi|167622602|ref|YP_001672896.1| formate dehydrogenase subunit alpha [Shewanella halifaxensis
           HAW-EB4]
 gi|167352624|gb|ABZ75237.1| formate dehydrogenase, alpha subunit [Shewanella halifaxensis
           HAW-EB4]
          Length = 1457

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 27/98 (27%), Gaps = 15/98 (15%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT----- 90
            P        +F  + +         RCI+C  C  IC  +           +       
Sbjct: 629 VPQSPVDAPRQFSVDDSSPFITFDANRCISCGACVDICHNKCGHSAISFESENHYQVLPD 688

Query: 91  ----------RRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                     R      +    C+ CG C + CP  A+
Sbjct: 689 SSLSPERRAPRVGFNVTMRDSDCVQCGSCIQVCPTGAL 726


>gi|163814469|ref|ZP_02205858.1| hypothetical protein COPEUT_00620 [Coprococcus eutactus ATCC 27759]
 gi|158450104|gb|EDP27099.1| hypothetical protein COPEUT_00620 [Coprococcus eutactus ATCC 27759]
          Length = 286

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 27/74 (36%), Gaps = 11/74 (14%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
               G          E  CI C +C   C   AIT+  G              +D  KC 
Sbjct: 147 ENDVGIKGAMVVEWDEPSCIMCGVCVKACREGAITMADGKII-----------LDTDKCN 195

Query: 105 YCGLCQEACPVDAI 118
           YCG C +ACP DA 
Sbjct: 196 YCGRCAKACPTDAW 209



 Score = 34.3 bits (77), Expect = 5.9,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 16/48 (33%), Gaps = 3/48 (6%)

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           C    +  E       G         D   CI CG+C +AC   AI  
Sbjct: 138 CQNNCLKAEENDVGIKGAMVVEW---DEPSCIMCGVCVKACREGAITM 182


>gi|153941131|ref|YP_001391108.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum F str. Langeland]
 gi|152937027|gb|ABS42525.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum F str. Langeland]
 gi|295319154|gb|ADF99531.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum F str. 230613]
          Length = 631

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 10/63 (15%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           +    ++CI C  C   CP   I            +   ++ I+  KCI CG C  ACPV
Sbjct: 576 HYEITDKCIGCTKCARGCPVSCIIG----------KVKEKHFINQEKCIKCGNCYSACPV 625

Query: 116 DAI 118
            AI
Sbjct: 626 GAI 628



 Score = 37.8 bits (86), Expect = 0.51,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 17/39 (43%)

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +  RC  GT + + +     KCI C  C   CPV  I
Sbjct: 560 HVNEKRCPSGTCKNLLHYEITDKCIGCTKCARGCPVSCI 598


>gi|90110038|sp|Q53046|NIFJ_RHORT RecName: Full=Pyruvate-flavodoxin oxidoreductase
          Length = 1191

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 30/101 (29%), Gaps = 20/101 (19%)

Query: 31  KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------------- 77
                +P E      R   +       +    CI C  C  +CP  A             
Sbjct: 667 PVDGTWPTETARWEKRDIAQQVCSWDAD---LCIQCNKCVMVCPHAALRVKAVPAEAAAA 723

Query: 78  --ITIESGPRCHDGTRRTVRYDI--DMIKCIYCGLCQEACP 114
              ++ S P       +   Y +      C  CG+C EACP
Sbjct: 724 LPASMNSTPYKGKDDLKGSAYVLALSPEDCTGCGICVEACP 764


>gi|83593733|ref|YP_427485.1| pyruvate-ferredoxin (flavodoxin) oxidoreductase [Rhodospirillum
           rubrum ATCC 11170]
 gi|83576647|gb|ABC23198.1| Pyruvate-ferredoxin (flavodoxin) oxidoreductase [Rhodospirillum
           rubrum ATCC 11170]
          Length = 1186

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 30/101 (29%), Gaps = 20/101 (19%)

Query: 31  KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------------- 77
                +P E      R   +       +    CI C  C  +CP  A             
Sbjct: 662 PVDGTWPTETARWEKRDIAQQVCSWDAD---LCIQCNKCVMVCPHAALRVKAVPAEAAAA 718

Query: 78  --ITIESGPRCHDGTRRTVRYDI--DMIKCIYCGLCQEACP 114
              ++ S P       +   Y +      C  CG+C EACP
Sbjct: 719 LPASMNSTPYKGKDDLKGSAYVLALSPEDCTGCGICVEACP 759


>gi|453436|emb|CAA54651.1| pyruvate oxidoreductase [Rhodospirillum rubrum]
          Length = 1191

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/101 (20%), Positives = 30/101 (29%), Gaps = 20/101 (19%)

Query: 31  KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------------- 77
                +P E      R   +       +    CI C  C  +CP  A             
Sbjct: 667 PVDGTWPTETARWEKRDIAQQVCSWDAD---LCIQCNKCVMVCPHAALRVKAVPAEAAAA 723

Query: 78  --ITIESGPRCHDGTRRTVRYDI--DMIKCIYCGLCQEACP 114
              ++ S P       +   Y +      C  CG+C EACP
Sbjct: 724 LPASMNSTPYKGKDDLKGSAYVLALSPEDCTGCGICVEACP 764


>gi|326790680|ref|YP_004308501.1| hydrogenase, Fe-only [Clostridium lentocellum DSM 5427]
 gi|326541444|gb|ADZ83303.1| hydrogenase, Fe-only [Clostridium lentocellum DSM 5427]
          Length = 562

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 3/68 (4%)

Query: 59  GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQEACPV 115
            E +CI C  C  +C   Q I            R +  +   I   KC+ CG C   CP 
Sbjct: 143 DESKCILCGDCVRMCDEMQNIGAIDFAHRGTNMRISTAFHKPISESKCVSCGQCAAVCPT 202

Query: 116 DAIVEGPN 123
            AIV   +
Sbjct: 203 GAIVVKND 210


>gi|295695743|ref|YP_003588981.1| formate dehydrogenase, alpha subunit [Bacillus tusciae DSM 2912]
 gi|295411345|gb|ADG05837.1| formate dehydrogenase, alpha subunit [Bacillus tusciae DSM 2912]
          Length = 991

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---YDIDMIKCIYCGLCQE 111
            Y     +CI C  C   C    +             R V      ID   C+ CG C  
Sbjct: 150 FYRYDPNQCILCGRCVEACQNLQVNETLSIDWSLERPRVVWDGGVPIDQSSCVSCGHCVT 209

Query: 112 ACPVDAIVE 120
            CP +A++E
Sbjct: 210 VCPCNALME 218



 Score = 39.3 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 24/75 (32%), Gaps = 9/75 (12%)

Query: 48  RGEHALRRYPNGEERCIAC----KLCEAI-----CPAQAITIESGPRCHDGTRRTVRYDI 98
           R E   R   N E  C  C      C           Q       P+ +D       Y  
Sbjct: 94  RLEAVDRILVNHELYCTVCDNNNGNCVVHNTVKQLGVQHQREPFSPKPYDVDDTNPFYRY 153

Query: 99  DMIKCIYCGLCQEAC 113
           D  +CI CG C EAC
Sbjct: 154 DPNQCILCGRCVEAC 168


>gi|227885955|ref|ZP_04003760.1| electron transport complex protein RnfC [Escherichia coli 83972]
 gi|227837047|gb|EEJ47513.1| electron transport complex protein RnfC [Escherichia coli 83972]
          Length = 616

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|325261134|ref|ZP_08127872.1| pyridine nucleotide-disulfide oxidoreductase/rhodanese domain
           protein [Clostridium sp. D5]
 gi|324032588|gb|EGB93865.1| pyridine nucleotide-disulfide oxidoreductase/rhodanese domain
           protein [Clostridium sp. D5]
          Length = 860

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 32/127 (25%), Gaps = 24/127 (18%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P           G    R      E+C  C  C+           +            +
Sbjct: 690 CPNNCVKPDLNDLGIIGQRVPQIDFEKCRGCGTCQ--VVEGCPIKIAELADG-------K 740

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRN 155
             ID  KC +CG C   CP   I           T     Y        G RW  ++ + 
Sbjct: 741 ILIDDDKCNHCGRCVGKCPFKVIE--------KYTNGYRVY-------IGGRWGKKVAQG 785

Query: 156 IVTDSPY 162
              D  +
Sbjct: 786 QYLDKVF 792


>gi|257467927|ref|ZP_05632023.1| nitroreductase family protein fused to ferredoxin domain
           [Fusobacterium ulcerans ATCC 49185]
 gi|317062215|ref|ZP_07926700.1| nitroreductase [Fusobacterium ulcerans ATCC 49185]
 gi|313687891|gb|EFS24726.1| nitroreductase [Fusobacterium ulcerans ATCC 49185]
          Length = 266

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 14/90 (15%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                +E+CI C+ C   C  + + +E+G     G            +C+ CG C   CP
Sbjct: 1   MVSIDKEKCIGCRACVEDCFPENLFLENGKAEIKG------------RCMQCGHCIAVCP 48

Query: 115 VDAIVEG--PNFEFATETRQELYYDKERLL 142
           V+A+     P        ++E     ERLL
Sbjct: 49  VNAVSITNYPKEGIEEYNKEEFNISPERLL 78


>gi|170024152|ref|YP_001720657.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing
           protein [Yersinia pseudotuberculosis YPIII]
 gi|169750686|gb|ACA68204.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Yersinia pseudotuberculosis YPIII]
          Length = 1177

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 34/138 (24%), Gaps = 36/138 (26%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A        + C  C  C A C
Sbjct: 646 MLAGLGDTL------PVSAFPPDGTWPVGTTQWEKRNIAENIPIWQPDLCTQCNHCVAAC 699

Query: 74  PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           P  A                   +++   R   G +      +    C  C LC E CP 
Sbjct: 700 PHSAIRAKVVQPEAMAGAPDSLQSLDVKARDMRGQKY--VLQVAPEDCTGCNLCYEVCPA 757

Query: 116 --------DAIVEGPNFE 125
                    AI   P+ E
Sbjct: 758 KDRQNPEIKAINMRPHLE 775


>gi|134046812|ref|YP_001098297.1| ferredoxin [Methanococcus maripaludis C5]
 gi|132664437|gb|ABO36083.1| membrane-bound hydrogenase subunit ehbL [Methanococcus maripaludis
           C5]
          Length = 170

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 7/86 (8%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTV--RYDIDMIKCIYCGLCQEACPVDAIV- 119
           CI C  C+  CP +AI +            +      ID  KC+YC  C + CPV A+  
Sbjct: 52  CIGCGGCKNACPTKAIEMMPVEPVKITETYSKEAVPKIDYDKCVYCLYCHDFCPVFALFN 111

Query: 120 -EGPNFEFATETRQELY-YDKERLLN 143
              P         ++L   D  +LL 
Sbjct: 112 EISPIHPRHVG--EDLVQVDLSKLLE 135


>gi|118444478|ref|YP_878332.1| hydrogenase [Clostridium novyi NT]
 gi|118134934|gb|ABK61978.1| hydrogenase [Clostridium novyi NT]
          Length = 579

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPV 115
              +CI C  C   C  +  T     +  +G+ +    D   +D   C+ CG C   CPV
Sbjct: 149 DRHKCIKCGRCAVTCKNKTNTQAILLKMINGSFKVKTTDDKSLDETNCLLCGQCVNICPV 208

Query: 116 DAIVEGPNFE 125
            A+ E P+ +
Sbjct: 209 AALSETPHID 218


>gi|73749235|ref|YP_308474.1| putative reductive dehalogenase [Dehalococcoides sp. CBDB1]
 gi|289433210|ref|YP_003463083.1| reductive dehalogenase [Dehalococcoides sp. GT]
 gi|73660951|emb|CAI83558.1| putative reductive dehalogenase [Dehalococcoides sp. CBDB1]
 gi|288946930|gb|ADC74627.1| reductive dehalogenase [Dehalococcoides sp. GT]
          Length = 495

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 3/74 (4%)

Query: 56  YPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
                + C  C +C   CP  AI         R        + +  D+  C +C +CQ  
Sbjct: 375 DFGARKFCETCGICADSCPQGAIQQGEATWDARYAWENSGYLGWRNDLTLCNHCPVCQGV 434

Query: 113 CPVDAIVEGPNFEF 126
           CP +A  +    E 
Sbjct: 435 CPFNAFDKSGIHEI 448


>gi|331085360|ref|ZP_08334446.1| hypothetical protein HMPREF0987_00749 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408143|gb|EGG87633.1| hypothetical protein HMPREF0987_00749 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 594

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 11/78 (14%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G + ++        C  C  C   C  +AI++                 I    CI+CG 
Sbjct: 9   GVNGMKVIDFQNASCKHCYKCVRNCSVKAISVRHEQAH-----------IMNDHCIHCGK 57

Query: 109 CQEACPVDAIVEGPNFEF 126
           C E CP +A     + E 
Sbjct: 58  CLEVCPQNAKRFASDLEL 75


>gi|323484611|ref|ZP_08089974.1| hypothetical protein HMPREF9474_01725 [Clostridium symbiosum
           WAL-14163]
 gi|323402072|gb|EGA94407.1| hypothetical protein HMPREF9474_01725 [Clostridium symbiosum
           WAL-14163]
          Length = 428

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 6/57 (10%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
             +++C AC  CE +C   AI  +               +I+   C+ CG C   CP
Sbjct: 5   CDKDKCTACGACENLCTQNAIYRQENIDGSW------HMEINEKMCVNCGRCSNVCP 55


>gi|315182318|gb|ADT89231.1| hypothetical formate dehydrogenase, alphasubunit [Vibrio furnissii
           NCTC 11218]
          Length = 1376

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 7/64 (10%)

Query: 59  GEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
              RCI+C  C   C       A+              T+  D     C+ CG C + CP
Sbjct: 613 DANRCISCGACVQTCQEETVHGALHFSHSQNRPMFHDGTLMGD---SNCVQCGACVQVCP 669

Query: 115 VDAI 118
             A+
Sbjct: 670 TGAL 673


>gi|260596726|ref|YP_003209297.1| putative formate dehydrogenase yrhE [Cronobacter turicensis z3032]
 gi|260215903|emb|CBA28461.1| Putative formate dehydrogenase yrhE [Cronobacter turicensis z3032]
          Length = 990

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 31/91 (34%), Gaps = 4/91 (4%)

Query: 34  INYPFEKGST-SPRFRGEHALRRYPNGEERCIACKLCEAICP---AQAITIESGPRCHDG 89
           ++ P ++       +  +H+   Y    ++CI C  C   C                H  
Sbjct: 119 MHIPIQRYEYQRKPYVKDHSNPFYTYDPDQCILCGRCVEACQNVEVNETLSIDYTMAHPR 178

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
                   I    C+ CG C   CP +A++E
Sbjct: 179 VLWDGGDTIAGSSCVSCGHCVTVCPCNALIE 209



 Score = 37.8 bits (86), Expect = 0.47,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 21/62 (33%), Gaps = 11/62 (17%)

Query: 62  RCIAC----KLCEAICPAQAITIESGPRCHDGTRRTVR------YDIDMIKCIYCGLCQE 111
            C  C      C  +  A A       R     +  V+      Y  D  +CI CG C E
Sbjct: 99  YCTVCEHNTGDC-TLHNAVADMHIPIQRYEYQRKPYVKDHSNPFYTYDPDQCILCGRCVE 157

Query: 112 AC 113
           AC
Sbjct: 158 AC 159


>gi|239815128|ref|YP_002944038.1| electron transport complex, RnfABCDGE type, subunit beta
           [Variovorax paradoxus S110]
 gi|239801705|gb|ACS18772.1| electron transport complex, RnfABCDGE type, B subunit [Variovorax
           paradoxus S110]
          Length = 214

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 27/82 (32%), Gaps = 10/82 (12%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E     P+F  E         E  CI C LC   CP  AI   +             + +
Sbjct: 60  EPLPLDPQFGTEGPRAMAVIDEAWCIGCTLCLDACPTDAIVGINK----------RMHTV 109

Query: 99  DMIKCIYCGLCQEACPVDAIVE 120
               C  C LC   CPVD I  
Sbjct: 110 IEAHCTGCELCIPVCPVDCISL 131


>gi|170759324|ref|YP_001787173.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A3 str. Loch Maree]
 gi|169406313|gb|ACA54724.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 631

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 10/63 (15%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           +    ++CI C  C   CP   I            +   ++ I+  KCI CG C  ACPV
Sbjct: 576 HYEITDKCIGCTKCARGCPVSCIIG----------KVKEKHFINQEKCIKCGNCYSACPV 625

Query: 116 DAI 118
            AI
Sbjct: 626 GAI 628



 Score = 37.8 bits (86), Expect = 0.52,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 17/39 (43%)

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +  RC  GT + + +     KCI C  C   CPV  I
Sbjct: 560 HVNEKRCPSGTCKNLLHYEITDKCIGCTKCARGCPVSCI 598


>gi|168180426|ref|ZP_02615090.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum NCTC 2916]
 gi|226949092|ref|YP_002804183.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A2 str. Kyoto]
 gi|182668703|gb|EDT80681.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum NCTC 2916]
 gi|226842684|gb|ACO85350.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A2 str. Kyoto]
          Length = 631

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 10/63 (15%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           +    ++CI C  C   CP   I            +   ++ I+  KCI CG C  ACPV
Sbjct: 576 HYEITDKCIGCTKCARGCPVSCIIG----------KVKEKHFINQEKCIKCGNCYSACPV 625

Query: 116 DAI 118
            AI
Sbjct: 626 GAI 628



 Score = 37.8 bits (86), Expect = 0.52,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 17/39 (43%)

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +  RC  GT + + +     KCI C  C   CPV  I
Sbjct: 560 HVNEKRCPSGTCKNLLHYEITDKCIGCTKCARGCPVSCI 598


>gi|297620127|ref|YP_003708232.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus voltae A3]
 gi|297379104|gb|ADI37259.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           voltae A3]
          Length = 253

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 12/94 (12%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           K    P    +  L ++    ++CI C +CE  C  +AI +E          + V  DI+
Sbjct: 114 KIEEMPVEHRKIKLIKHNLDMDKCIKCAICERFCAPKAIKVE----------KKVSIDIN 163

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
              C+ C  C++ CPV+AI    ++E +    ++
Sbjct: 164 EDLCMGCTACEKVCPVNAIKV--DYELSDIKFED 195



 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 9/88 (10%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           +      ++C+ C+LC   CP  AI   +               I   KCI C +C + C
Sbjct: 40  KNLYIQPKKCVHCELCLEACPVDAIEKPNLKNSA---------KIIPEKCIKCEICAKTC 90

Query: 114 PVDAIVEGPNFEFATETRQELYYDKERL 141
           PV AI       F  ET++ + Y  E +
Sbjct: 91  PVGAIEVLNGEAFLDETKENVIYKIEEM 118



 Score = 41.2 bits (95), Expect = 0.047,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 12/60 (20%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++CI C +C  +CP  AIT +             +  ID  KC++CG+C++ CPV AI
Sbjct: 200 ETDKCIDCMVCHDLCPVSAITYDG------------KIIIDNEKCVHCGICEKNCPVSAI 247



 Score = 40.1 bits (92), Expect = 0.095,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ C+ C  CE +CP  AI ++         +    + ++  KCI C +C + CPV AI
Sbjct: 163 NEDLCMGCTACEKVCPVNAIKVDYELSD---IKFEDEFVVETDKCIDCMVCHDLCPVSAI 219


>gi|90414012|ref|ZP_01221996.1| hypothetical protein P3TCK_06747 [Photobacterium profundum 3TCK]
 gi|90324934|gb|EAS41455.1| hypothetical protein P3TCK_06747 [Photobacterium profundum 3TCK]
          Length = 205

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/119 (20%), Positives = 38/119 (31%), Gaps = 11/119 (9%)

Query: 12  FLKEFVGAFFLC--------LRYFFKAKTTINYPFEKGST-SPRFRGEHALRRYPNGEER 62
           FL     + +L         +      +        K      + R   AL      ++ 
Sbjct: 6   FLYRIFKSLWLTAIAAVPYGIGRMLMPEKNQLASLNKSQLNHDKLRPPGALNDDIAFKKA 65

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           CI C LC  +CP   I        ++     +   +    CI CG C E CP +A+   
Sbjct: 66  CIGCSLCAEVCPPACIQFYHLDGANNANTPYIEPALRA--CILCGKCMEVCPTNALTVT 122



 Score = 37.8 bits (86), Expect = 0.50,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 9/73 (12%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVR--YDIDMIKCIYCGLCQEACP--VDAI 118
           CI C  C  +CP  A+T+    + + G  +  R      + + I CG C   CP    AI
Sbjct: 104 CILCGKCMEVCPTNALTVTETRKVNMGRAQIERLACYPWVDRGI-CGACVSICPLGETAI 162

Query: 119 VEGPNFEFATETR 131
                FEFA   R
Sbjct: 163 S----FEFANMYR 171


>gi|238790208|ref|ZP_04633984.1| Electron transport complex protein rnfB [Yersinia frederiksenii
           ATCC 33641]
 gi|238721746|gb|EEQ13410.1| Electron transport complex protein rnfB [Yersinia frederiksenii
           ATCC 33641]
          Length = 207

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 24/78 (30%), Gaps = 10/78 (12%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C  C   CP  AI   +             + +    C  C LC   CP D
Sbjct: 111 FIDEANCIGCTKCIQACPVDAIVGAT----------RAMHTVLPDLCTGCDLCVAPCPTD 160

Query: 117 AIVEGPNFEFATETRQEL 134
            I   P        + +L
Sbjct: 161 CIEMIPVATTTANWKWDL 178


>gi|333018895|gb|EGK38188.1| electron transport complex protein rnfC [Shigella flexneri K-227]
          Length = 644

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 35/109 (32%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CP   +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPVD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|333005861|gb|EGK25377.1| electron transport complex protein rnfC [Shigella flexneri K-272]
          Length = 620

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 35/109 (32%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CP   +  +       G +       ++  CI CG C   CP  
Sbjct: 347 PQEEQSCIRCSACADACPVD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 404

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 405 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 453


>gi|333005285|gb|EGK24805.1| electron transport complex protein rnfC [Shigella flexneri VA-6]
          Length = 708

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 35/109 (32%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CP   +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPVD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|317133139|ref|YP_004092453.1| hypothetical protein Ethha_2205 [Ethanoligenens harbinense YUAN-3]
 gi|315471118|gb|ADU27722.1| hypothetical protein Ethha_2205 [Ethanoligenens harbinense YUAN-3]
          Length = 379

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/111 (26%), Positives = 33/111 (29%), Gaps = 15/111 (13%)

Query: 15  EFVGAFFLCLRYFFKAKTTINYPF-EKGSTSPRFRGEHAL---RRYPNGEERCIACKLCE 70
           E VG     L   F+   + +  F E        R         R      +CI C  C 
Sbjct: 272 EIVGERAETLLTLFEKPDSASLDFMENIRVPAFLRKPLKKLLTPRPVIVRSKCIGCGKCA 331

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
             CP   I IE                I    CI C  C E CPV AI   
Sbjct: 332 ESCPRHVIRIEQKKAH-----------IAYTDCIRCFCCHEMCPVKAIDIH 371


>gi|257486634|ref|ZP_05640675.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           tabaci ATCC 11528]
          Length = 211

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 10/75 (13%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           RG    +     E  CI C  C   CP  AI   +           + + + + +C  C 
Sbjct: 76  RGAAPAQVAFIREAECIGCTKCIQACPVDAIVGAAK----------LMHTVIVDECTGCD 125

Query: 108 LCQEACPVDAIVEGP 122
           LC   CPVD I   P
Sbjct: 126 LCVAPCPVDCIEMHP 140


>gi|149190373|ref|ZP_01868645.1| electron transport complex protein RnfC [Vibrio shilonii AK1]
 gi|148835752|gb|EDL52717.1| electron transport complex protein RnfC [Vibrio shilonii AK1]
          Length = 934

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 34/101 (33%), Gaps = 3/101 (2%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C  C   CPA  +  +               ++++  CI CG C   CP   I    
Sbjct: 378 CIRCSQCAEACPAS-LLPQQLQWYAKSQEYDKCEELNLKDCIECGACAFVCP-SEIPLVH 435

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            +  A    +    + E       R+E +  R +  D   R
Sbjct: 436 YYRQAKAEIRTRKQESEAAERAKVRFEEKKAR-LERDKAER 475


>gi|146296647|ref|YP_001180418.1| nitrite and sulphite reductase 4Fe-4S region [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410223|gb|ABP67227.1| nitrite and sulphite reductase 4Fe-4S region [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 282

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 9/76 (11%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G     +    +  C  C LC+A+CP +AI I+          +     ID  KC YCG 
Sbjct: 138 GIKGAVKPEWEKSSCTFCGLCQAVCPTKAIQIDE---------KNKEITIDRDKCTYCGR 188

Query: 109 CQEACPVDAIVEGPNF 124
           C ++CP ++    P +
Sbjct: 189 CVKSCPTNSWKGKPGY 204



 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 10/68 (14%)

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           C    +  E       G  +      +   C +CGLCQ  CP  AI          E  +
Sbjct: 125 CGNNCLKAEENDLGIKGAVKPEW---EKSSCTFCGLCQAVCPTKAIQI-------DEKNK 174

Query: 133 ELYYDKER 140
           E+  D+++
Sbjct: 175 EITIDRDK 182


>gi|6686277|sp|P49949|FER_ACIAM RecName: Full=Zinc-containing ferredoxin; AltName: Full=Seven-iron
           ferredoxin
 gi|169404651|pdb|2VKR|A Chain A, 3fe-4s, 4fe-4s Plus Zn Acidianus Ambivalens Ferredoxin
 gi|169404652|pdb|2VKR|B Chain B, 3fe-4s, 4fe-4s Plus Zn Acidianus Ambivalens Ferredoxin
 gi|169404653|pdb|2VKR|C Chain C, 3fe-4s, 4fe-4s Plus Zn Acidianus Ambivalens Ferredoxin
 gi|169404654|pdb|2VKR|D Chain D, 3fe-4s, 4fe-4s Plus Zn Acidianus Ambivalens Ferredoxin
 gi|169404655|pdb|2VKR|E Chain E, 3fe-4s, 4fe-4s Plus Zn Acidianus Ambivalens Ferredoxin
 gi|169404656|pdb|2VKR|F Chain F, 3fe-4s, 4fe-4s Plus Zn Acidianus Ambivalens Ferredoxin
 gi|169404657|pdb|2VKR|G Chain G, 3fe-4s, 4fe-4s Plus Zn Acidianus Ambivalens Ferredoxin
          Length = 103

 Score = 48.6 bits (114), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 25/84 (29%), Gaps = 2/84 (2%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
             G   P               + CIA   C   CP         P      ++     I
Sbjct: 21  VYGPVDPPKVLGIHGTIVGVDFDLCIADGSCITACPVNVFQWYDTPGHPASEKKADP--I 78

Query: 99  DMIKCIYCGLCQEACPVDAIVEGP 122
           +   CI+C  C   CPV AI   P
Sbjct: 79  NEQACIFCMACVNVCPVAAIDVKP 102


>gi|323492677|ref|ZP_08097821.1| iron-sulfur cluster-binding protein [Vibrio brasiliensis LMG 20546]
 gi|323313052|gb|EGA66172.1| iron-sulfur cluster-binding protein [Vibrio brasiliensis LMG 20546]
          Length = 554

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 10/81 (12%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             C  C  C A+CP +A+  +           +         CI CGLC +ACP   +  
Sbjct: 419 NDCTLCMSCVAVCPTRALHTDGE---------SPSLKFVEQDCIQCGLCTKACPEQVLTM 469

Query: 121 GPNFEFATETRQEL-YYDKER 140
                +   +RQ+     +E+
Sbjct: 470 TTRMNWDKASRQQASVIHQEK 490



 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 6/54 (11%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           C+ C   CPA A++ E   +         R +I+   C   G C  ACP +AI 
Sbjct: 187 CERCVDACPAGALSSEGSDKTGH------RIEINPYLCQGVGTCATACPTEAIH 234


>gi|315297365|gb|EFU56645.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 16-3]
          Length = 580

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|331668306|ref|ZP_08369154.1| electron transport complex protein RnfC [Escherichia coli TA271]
 gi|331063500|gb|EGI35411.1| electron transport complex protein RnfC [Escherichia coli TA271]
          Length = 620

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|306844922|ref|ZP_07477504.1| dihydroorotate dehydrogenase family protein [Brucella sp. BO1]
 gi|306274751|gb|EFM56535.1| dihydroorotate dehydrogenase family protein [Brucella sp. BO1]
          Length = 436

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 6/79 (7%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI C  C       A    S             +++   +C+ 
Sbjct: 330 QYLNLNYVTKARINQDLCIQCGRCHI-----ACEDTSHQAITAMVNGARHFEVIDEECVG 384

Query: 106 CGLCQEACPV-DAIVEGPN 123
           C LC   CPV + I     
Sbjct: 385 CNLCVNVCPVENCITMEQI 403


>gi|254713135|ref|ZP_05174946.1| dihydropyrimidine dehydrogenase [Brucella ceti M644/93/1]
 gi|254716511|ref|ZP_05178322.1| dihydropyrimidine dehydrogenase [Brucella ceti M13/05/1]
 gi|261218305|ref|ZP_05932586.1| dihydropyrimidine dehydrogenase [Brucella ceti M13/05/1]
 gi|261320846|ref|ZP_05960043.1| dihydropyrimidine dehydrogenase [Brucella ceti M644/93/1]
 gi|260923394|gb|EEX89962.1| dihydropyrimidine dehydrogenase [Brucella ceti M13/05/1]
 gi|261293536|gb|EEX97032.1| dihydropyrimidine dehydrogenase [Brucella ceti M644/93/1]
          Length = 436

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 6/79 (7%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI C  C       A    S             +++   +C+ 
Sbjct: 330 QYLNLNYVTKARINQDLCIQCGRCHI-----ACEDTSHQAITAMVNGARHFEVIDEECVG 384

Query: 106 CGLCQEACPV-DAIVEGPN 123
           C LC   CPV + I     
Sbjct: 385 CNLCVNVCPVENCITMEQI 403


>gi|254693078|ref|ZP_05154906.1| dihydropyrimidine dehydrogenase [Brucella abortus bv. 3 str. Tulya]
 gi|261213313|ref|ZP_05927594.1| dihydropyrimidine dehydrogenase [Brucella abortus bv. 3 str. Tulya]
 gi|260914920|gb|EEX81781.1| dihydropyrimidine dehydrogenase [Brucella abortus bv. 3 str. Tulya]
          Length = 436

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 6/79 (7%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI C  C       A    S             +++   +C+ 
Sbjct: 330 QYLNLNYVTKARINQDLCIQCGRCHI-----ACEDTSHQAITAMVNGARHFEVIDEECVG 384

Query: 106 CGLCQEACPV-DAIVEGPN 123
           C LC   CPV + I     
Sbjct: 385 CNLCVNVCPVENCITMEQI 403


>gi|148559324|ref|YP_001258321.1| dihydropyrimidine dehydrogenase [Brucella ovis ATCC 25840]
 gi|148370581|gb|ABQ60560.1| dihydroorotate dehydrogenase family protein [Brucella ovis ATCC
           25840]
          Length = 436

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 6/79 (7%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI C  C       A    S             +++   +C+ 
Sbjct: 330 QYLNLNYVTKARINQDLCIQCGRCHI-----ACEDTSHQAITAMVNGARHFEVIDEECVG 384

Query: 106 CGLCQEACPV-DAIVEGPN 123
           C LC   CPV + I     
Sbjct: 385 CNLCVNVCPVENCITMEQI 403


>gi|148381245|ref|YP_001255786.1| [Fe] hydrogenase [Clostridium botulinum A str. ATCC 3502]
 gi|148290729|emb|CAL84860.1| putative iron-dependent hydrogenase [Clostridium botulinum A str.
           ATCC 3502]
          Length = 498

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 7/69 (10%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIKCIYCGLC 109
              + +C  C LC+ +CP  AI     P                 R  I+   CI CG C
Sbjct: 136 YIDQNKCRECGLCKKVCPYNAIVEVMRPCKKVCPTGALEINPDDKRAMIEKENCINCGAC 195

Query: 110 QEACPVDAI 118
             ACP  AI
Sbjct: 196 MAACPFGAI 204


>gi|119899348|ref|YP_934561.1| putative benzoyl-CoA oxygenase component A [Azoarcus sp. BH72]
 gi|119671761|emb|CAL95675.1| putative Benzoyl-CoA oxygenase component A [Azoarcus sp. BH72]
          Length = 416

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/81 (32%), Positives = 33/81 (40%), Gaps = 12/81 (14%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           R++    E CI C  CE ICP  AIT ++           + Y +    C  C  C   C
Sbjct: 12  RQHLIDPEICIRCNTCEEICPVDAITHDN-----------LNYVVKFDVCNGCLACISPC 60

Query: 114 PVDAIVEGPNFEFAT-ETRQE 133
           P  AI    N E A   T +E
Sbjct: 61  PTGAIDSWRNVEKAVPYTLEE 81


>gi|23501189|ref|NP_697316.1| dihydropyrimidine dehydrogenase [Brucella suis 1330]
 gi|161618261|ref|YP_001592148.1| dihydropyrimidine dehydrogenase [Brucella canis ATCC 23365]
 gi|254703651|ref|ZP_05165479.1| dihydropyrimidine dehydrogenase [Brucella suis bv. 3 str. 686]
 gi|260567096|ref|ZP_05837566.1| dihydropyrimidine dehydrogenase [Brucella suis bv. 4 str. 40]
 gi|261754289|ref|ZP_05997998.1| dihydropyrimidine dehydrogenase [Brucella suis bv. 3 str. 686]
 gi|23347067|gb|AAN29231.1| dihydroorotate dehydrogenase family protein [Brucella suis 1330]
 gi|161335072|gb|ABX61377.1| dihydroorotate dehydrogenase family protein [Brucella canis ATCC
           23365]
 gi|260156614|gb|EEW91694.1| dihydropyrimidine dehydrogenase [Brucella suis bv. 4 str. 40]
 gi|261744042|gb|EEY31968.1| dihydropyrimidine dehydrogenase [Brucella suis bv. 3 str. 686]
          Length = 436

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 6/79 (7%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI C  C       A    S             +++   +C+ 
Sbjct: 330 QYLNLNYVTKARINQDLCIQCGRCHI-----ACEDTSHQAITAMVNGARHFEVIDEECVG 384

Query: 106 CGLCQEACPV-DAIVEGPN 123
           C LC   CPV + I     
Sbjct: 385 CNLCVNVCPVENCITMEQI 403


>gi|323952614|gb|EGB48486.1| electron transporter [Escherichia coli H252]
          Length = 651

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|323388077|gb|ADX60300.1| hypothetical protein [Furcellaria lumbricalis]
          Length = 33

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 24/33 (72%), Positives = 29/33 (87%)

Query: 105 YCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
           +CG CQEACPVDAIVEGPN+E+ TET +EL Y+
Sbjct: 1   FCGACQEACPVDAIVEGPNYEYXTETHEELLYN 33


>gi|320354002|ref|YP_004195341.1| hydrogenase, Fe-only [Desulfobulbus propionicus DSM 2032]
 gi|320122504|gb|ADW18050.1| hydrogenase, Fe-only [Desulfobulbus propionicus DSM 2032]
          Length = 533

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 33/113 (29%), Gaps = 14/113 (12%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYP----NGEERCIACKLCEAI 72
           +       +       T       GS   + RG   +          + +CI C  C   
Sbjct: 32  LSGCKDAGKPVGGEGWTPQQYNAPGSWPVQVRGRVPIDPNNPSIVRDDRKCILCGQCAEA 91

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           C       E            ++ DI    C+ CG C   CP  AI E  + E
Sbjct: 92  C-------ERVQSVEGFYGLPIKDDIT---CVNCGQCALWCPTGAISERDDIE 134


>gi|299143379|ref|ZP_07036459.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Peptoniphilus sp.
           oral taxon 386 str. F0131]
 gi|298517864|gb|EFI41603.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Peptoniphilus sp.
           oral taxon 386 str. F0131]
          Length = 1175

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/122 (22%), Positives = 41/122 (33%), Gaps = 33/122 (27%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV------------- 94
           RG      + N ++ CI C  C  +CP  AI            +                
Sbjct: 682 RGVAVNVPHWN-KDNCIQCNQCSFVCPHAAIRPFLLNTEEVANKPAEFETLAAKGKELAG 740

Query: 95  ---RYDIDMIKCIYCGLCQEACP--VDAIVEGP---------NFEFATETRQELYYDKER 140
              R  + ++ C  CG C + CP    A+V  P         N+E+A +        KE 
Sbjct: 741 LEYRIQVSVLDCTGCGNCADVCPAKEKALVMTPLGEELEEAKNWEYAMK-----VEPKED 795

Query: 141 LL 142
           L+
Sbjct: 796 LM 797


>gi|295681146|ref|YP_003609720.1| dihydroorotate dehydrogenase [Burkholderia sp. CCGE1002]
 gi|295441041|gb|ADG20209.1| dihydroorotate dehydrogenase family protein [Burkholderia sp.
           CCGE1002]
          Length = 426

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 6/77 (7%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   +   +    ++RCI C LC   C   +    +  R          +++    C+ 
Sbjct: 328 QYLNLNYDIKARIDQDRCIQCGLCHIACEDTSHQAITATRDGK-----RHFEVVDANCVG 382

Query: 106 CGLCQEACPV-DAIVEG 121
           C LC   CPV   I  G
Sbjct: 383 CNLCMHVCPVDQCITMG 399


>gi|229581623|ref|YP_002840022.1| putative ATPase RIL [Sulfolobus islandicus Y.N.15.51]
 gi|228012339|gb|ACP48100.1| ABC transporter related [Sulfolobus islandicus Y.N.15.51]
          Length = 602

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 23/76 (30%), Gaps = 5/76 (6%)

Query: 47  FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
           F     +       ++C     C   CP        G           +  I    CI C
Sbjct: 2   FVKVAVINYDFCKPDKCNL--ECINFCPVD---RSGGKAIELSDIVKGKPVIYEETCIGC 56

Query: 107 GLCQEACPVDAIVEGP 122
           G+C + CP +AI    
Sbjct: 57  GICVKKCPYEAISIVN 72


>gi|150008159|ref|YP_001302902.1| putative nitroreductase [Parabacteroides distasonis ATCC 8503]
 gi|255015113|ref|ZP_05287239.1| putative nitroreductase [Bacteroides sp. 2_1_7]
 gi|149936583|gb|ABR43280.1| putative nitroreductase [Parabacteroides distasonis ATCC 8503]
          Length = 286

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 26/77 (33%), Gaps = 11/77 (14%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                 +E CI C  C  +CP+   T E         R           CI CG C + C
Sbjct: 1   MTLNIDQESCIKCGKCVRVCPSDIFTQERAGETIGLVRV--------ESCIVCGHCVDVC 52

Query: 114 PVDAIVEGPNFEFATET 130
           P  ++      EF  E 
Sbjct: 53  PTGSVSHS---EFPPEK 66


>gi|119899328|ref|YP_934541.1| formate dehydrogenase subunit alpha [Azoarcus sp. BH72]
 gi|119671741|emb|CAL95654.1| probable formate dehydrogenase, alpha subunit [Azoarcus sp. BH72]
          Length = 961

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 28/86 (32%), Gaps = 11/86 (12%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P E+        G             CI C  C   C  +    +     H G    + +
Sbjct: 126 PREQPVADTSHPGIAV------NLAACIQCNRCLRACR-EIQVNDVIGYAHRGAESKIVF 178

Query: 97  D----IDMIKCIYCGLCQEACPVDAI 118
           D    +    C+ CG C +ACP  A+
Sbjct: 179 DLDVGMGTSSCVGCGECVQACPTGAL 204


>gi|83590554|ref|YP_430563.1| NADH dehydrogenase (quinone) [Moorella thermoacetica ATCC 39073]
 gi|83573468|gb|ABC20020.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Moorella thermoacetica ATCC 39073]
          Length = 619

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 24/68 (35%), Gaps = 10/68 (14%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             L  Y     +C  C  C  +CP  AI+                + ID   CI CG C 
Sbjct: 559 QELLSYVIDAGKCTGCGACSRVCPVGAISGGKKEA----------HQIDPAACIKCGSCY 608

Query: 111 EACPVDAI 118
           E C   AI
Sbjct: 609 EKCRFGAI 616



 Score = 42.4 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 17/44 (38%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            I          +  + Y ID  KC  CG C   CPV AI  G 
Sbjct: 547 HIRDHRCPAHVCQELLSYVIDAGKCTGCGACSRVCPVGAISGGK 590


>gi|320528927|ref|ZP_08030019.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Selenomonas
           artemidis F0399]
 gi|320138557|gb|EFW30447.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Selenomonas
           artemidis F0399]
          Length = 1177

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 17/90 (18%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQ--------------AITIESGPRCHDGTRRT 93
           RG        N +E+CI C  C  +CP                A       +   G  + 
Sbjct: 677 RGTAISVPVWN-KEKCIQCNQCSLVCPHASIRPVLTTDEELAAAPEGFESIKSKPGKAQN 735

Query: 94  VRYDIDMI--KCIYCGLCQEACPVDAIVEG 121
           + + I +    C+ CG C + CP  A+   
Sbjct: 736 LNFTIAVSTLDCLGCGNCAQVCPGKALDMT 765


>gi|313895482|ref|ZP_07829038.1| pyruvate synthase [Selenomonas sp. oral taxon 137 str. F0430]
 gi|312975608|gb|EFR41067.1| pyruvate synthase [Selenomonas sp. oral taxon 137 str. F0430]
          Length = 1177

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 17/90 (18%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQ--------------AITIESGPRCHDGTRRT 93
           RG        N +E+CI C  C  +CP                A       +   G  + 
Sbjct: 677 RGTAISVPVWN-KEKCIQCNQCSLVCPHASIRPVLTTDEELAAAPEGFESIKSKPGKAQN 735

Query: 94  VRYDIDMI--KCIYCGLCQEACPVDAIVEG 121
           + + I +    C+ CG C + CP  A+   
Sbjct: 736 LNFTIAVSTLDCLGCGNCAQVCPGKALDMT 765


>gi|306842448|ref|ZP_07475099.1| dihydroorotate dehydrogenase family protein [Brucella sp. BO2]
 gi|306287304|gb|EFM58784.1| dihydroorotate dehydrogenase family protein [Brucella sp. BO2]
          Length = 436

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 6/79 (7%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI C  C       A    S             +++   +C+ 
Sbjct: 330 QYLNLNYVTKARINQDLCIQCGRCHI-----ACEDTSHQAITAMVNGARHFEVIDEECVG 384

Query: 106 CGLCQEACPV-DAIVEGPN 123
           C LC   CPV + I     
Sbjct: 385 CNLCVNVCPVENCITMEQI 403


>gi|260886745|ref|ZP_05898008.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Selenomonas
           sputigena ATCC 35185]
 gi|330839436|ref|YP_004414016.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Selenomonas
           sputigena ATCC 35185]
 gi|260863597|gb|EEX78097.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Selenomonas
           sputigena ATCC 35185]
 gi|329747200|gb|AEC00557.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Selenomonas
           sputigena ATCC 35185]
          Length = 1174

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 26/85 (30%), Gaps = 14/85 (16%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQ--------------AITIESGPRCHDGTRRTVRYD 97
           A+       E+CI C  C  +CP                A       +            
Sbjct: 680 AINVPVWNAEKCIGCNQCSYVCPHATIRPVLTTDAEKDAAPAGFPWKKSKAIKDYNFTIA 739

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           +  + C+ CG C + CP  A+   P
Sbjct: 740 VSTMDCLGCGNCAQVCPAKALDMKP 764


>gi|253583402|ref|ZP_04860600.1| nitroreductase [Fusobacterium varium ATCC 27725]
 gi|251833974|gb|EES62537.1| nitroreductase [Fusobacterium varium ATCC 27725]
          Length = 266

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 17/89 (19%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +E+CI C  C   C  + + +E+G     G            +C+ CG C   CPVDA+
Sbjct: 5   DKEKCIGCGACVKDCFPENLFLENGKAEIKG------------RCMQCGHCIAVCPVDAV 52

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDR 147
                  +  E  +E  YDKE+   + DR
Sbjct: 53  SITN---YPQEGIEE--YDKEKFDISPDR 76


>gi|218887477|ref|YP_002436798.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218758431|gb|ACL09330.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 777

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C  C +CE ICP  AI+     R            +D  KCI CG C  ACP        
Sbjct: 718 CRDCGICETICPQAAIS-----RREVQGGCGFEMAVDAEKCIGCGFCAGACPCGIWNLVE 772

Query: 123 N 123
           N
Sbjct: 773 N 773


>gi|157375179|ref|YP_001473779.1| electron transport complex protein RnfC [Shewanella sediminis
           HAW-EB3]
 gi|157317553|gb|ABV36651.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella
           sediminis HAW-EB3]
          Length = 842

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 35/105 (33%), Gaps = 9/105 (8%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C  C  +CPAQ +  +               + ++  CI CG C   CP   I    
Sbjct: 384 CIRCGECAQVCPAQLLPQQLFWHAKAKE-YDKAVNFNLADCIECGCCTYVCP-SNIPLVE 441

Query: 123 NFEFAT-------ETRQELYYDKERLLNNGDRWESEIVRNIVTDS 160
            +  A        E +++    K+R      R E E +       
Sbjct: 442 YYRIAKSAVKTEAEEKKQAELAKQRFELRTQRLEDERLAREAKQK 486


>gi|119872012|ref|YP_930019.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Pyrobaculum islandicum DSM 4184]
 gi|119673420|gb|ABL87676.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Pyrobaculum islandicum DSM 4184]
          Length = 82

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 24/63 (38%), Gaps = 10/63 (15%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E+CI C LC   C          P       R  +  ID   C  CG+C   CPV AI  
Sbjct: 28  EKCIDCGLCWLYC----------PESVIEWERGQKIQIDYTYCKGCGICANVCPVKAIDM 77

Query: 121 GPN 123
            P 
Sbjct: 78  VPE 80


>gi|51596577|ref|YP_070768.1| pyruvate-flavodoxin oxidoreductase [Yersinia pseudotuberculosis IP
           32953]
 gi|153948855|ref|YP_001400778.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Yersinia
           pseudotuberculosis IP 31758]
 gi|186895635|ref|YP_001872747.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing
           protein [Yersinia pseudotuberculosis PB1/+]
 gi|51589859|emb|CAH21491.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia
           pseudotuberculosis IP 32953]
 gi|152960350|gb|ABS47811.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Yersinia
           pseudotuberculosis IP 31758]
 gi|186698661|gb|ACC89290.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Yersinia pseudotuberculosis PB1/+]
          Length = 1177

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/138 (16%), Positives = 33/138 (23%), Gaps = 36/138 (26%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A        + C  C  C A C
Sbjct: 646 MLAGLGDTL------PVSAFPPDGTWPVGTTQWEKRNIAENIPIWQPDLCTQCNHCVAAC 699

Query: 74  PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           P  A                   +++   R   G +      +    C  C LC E CP 
Sbjct: 700 PHSAIRAKVVQPEAMAGAPDSLQSLDVKARDMRGQKY--VLQVAPEDCTGCNLCYEVCPA 757

Query: 116 --------DAIVEGPNFE 125
                    AI   P  E
Sbjct: 758 KDRQNPEIKAINMRPRLE 775


>gi|302342956|ref|YP_003807485.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfarculus
           baarsii DSM 2075]
 gi|301639569|gb|ADK84891.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfarculus
           baarsii DSM 2075]
          Length = 550

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/76 (35%), Positives = 30/76 (39%), Gaps = 14/76 (18%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
            S   R  HALR  P    +C  C LC   CP QAI +  G              I    
Sbjct: 5   VSAHNRPIHALRILPE---KCTGCVLCMKACPNQAIRVHDGKAV-----------IRFDH 50

Query: 103 CIYCGLCQEACPVDAI 118
           C+ CG C   CP DAI
Sbjct: 51  CVACGACYRVCPADAI 66



 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 13/40 (32%)

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                   R      I   KC  C LC +ACP  AI    
Sbjct: 2   NQAVSAHNRPIHALRILPEKCTGCVLCMKACPNQAIRVHD 41


>gi|282878344|ref|ZP_06287136.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Prevotella
           buccalis ATCC 35310]
 gi|281299530|gb|EFA91907.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Prevotella
           buccalis ATCC 35310]
          Length = 1226

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 33/101 (32%), Gaps = 18/101 (17%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIE---------------SGPRCHDGTRR 92
           RG  A        E CI C  C  +CP  AI                  +          
Sbjct: 679 RGVEAFNPEWT-PENCIQCNKCAYVCPHAAIRPFVLDEEEVKGFNDKTLAMKVPRPMAGM 737

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
             R  + ++ C+ CG C + CP +   +G   +    TR E
Sbjct: 738 NFRIQVSVLDCVGCGNCADVCPGN--KQGKALKMVPFTRDE 776


>gi|260592305|ref|ZP_05857763.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Prevotella
           veroralis F0319]
 gi|260535755|gb|EEX18372.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Prevotella
           veroralis F0319]
          Length = 1191

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 22/82 (26%), Gaps = 16/82 (19%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK----- 102
           RG  A        E CI C  C  +CP   I                  DI   K     
Sbjct: 678 RGVAAFVPAW-DAENCIQCNKCAFVCPHACIRPFVLDEAEKAGFNEPTLDILAPKQLKGM 736

Query: 103 ----------CIYCGLCQEACP 114
                     C  CG C + CP
Sbjct: 737 QFRIEVSVLDCTGCGNCADVCP 758


>gi|254563948|ref|YP_003071043.1| Tungsten-containing formate dehydrogenase subunit alpha
           [Methylobacterium extorquens DM4]
 gi|254271226|emb|CAX27238.1| Tungsten-containing formate dehydrogenase alpha subunit
           [Methylobacterium extorquens DM4]
          Length = 989

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 3/98 (3%)

Query: 25  RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESG 83
            +F+     ++    +   + R+  + +        + CI C LC   C   Q   +   
Sbjct: 175 SHFWVQADVLDVTESRFPAAERWTSDVSHPAMSVNLDACIQCNLCVRACREVQVNDVIGM 234

Query: 84  PRCHDGTRRTVRYDIDM--IKCIYCGLCQEACPVDAIV 119
                G++    +D  M    C+ CG C +ACP  A++
Sbjct: 235 AYRAAGSKVVFDFDDPMGGSTCVACGECVQACPTGALM 272


>gi|198273884|ref|ZP_03206416.1| hypothetical protein BACPLE_00018 [Bacteroides plebeius DSM 17135]
 gi|198272962|gb|EDY97231.1| hypothetical protein BACPLE_00018 [Bacteroides plebeius DSM 17135]
          Length = 399

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 20/62 (32%), Gaps = 12/62 (19%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            + C  C +C   CP  AI     P                  C  CG C +ACP +A  
Sbjct: 13  RDACTQCGICADSCPFGAIQFNEYPEVD------------PYSCRLCGTCVQACPAEAWD 60

Query: 120 EG 121
             
Sbjct: 61  MQ 62



 Score = 38.2 bits (87), Expect = 0.35,   Method: Composition-based stats.
 Identities = 9/34 (26%), Positives = 14/34 (41%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
            +    C  CG+C ++CP  AI      E    +
Sbjct: 10  QLRRDACTQCGICADSCPFGAIQFNEYPEVDPYS 43


>gi|123967404|ref|XP_001313877.1| 4Fe-4S binding domain containing protein [Trichomonas vaginalis G3]
 gi|121895788|gb|EAY00960.1| 4Fe-4S binding domain containing protein [Trichomonas vaginalis G3]
          Length = 324

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 26/68 (38%), Gaps = 10/68 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L  +      CI C  C   CP  AITI               Y +D  KC  CGLC+  
Sbjct: 253 LINHLTNPSACIMCGKCTQ-CPNDAITIVPS---------RWIYKVDPYKCNGCGLCESV 302

Query: 113 CPVDAIVE 120
           CP  AI  
Sbjct: 303 CPTGAIEL 310


>gi|71065390|ref|YP_264117.1| putative electron transport complex, RnfABCDGE type, B subunit
           [Psychrobacter arcticus 273-4]
 gi|71038375|gb|AAZ18683.1| putative electron transport complex, RnfABCDGE type, B subunit
           [Psychrobacter arcticus 273-4]
          Length = 280

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 25/98 (25%), Gaps = 10/98 (10%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            +     A  T                     R    E+ CI C  C   CP  AI    
Sbjct: 85  TIAQIINADITTLSAESSKWPLDSHSQRPVEVRAVIREDDCIGCTKCIPACPVDAIVGTG 144

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
                        + I    C  C LC   CPVD I  
Sbjct: 145 K----------HMHTIFTDLCTGCELCIAPCPVDCIDL 172



 Score = 39.3 bits (90), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 20/54 (37%)

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
           A + +     H      VR  I    CI C  C  ACPVDAIV          T
Sbjct: 99  AESSKWPLDSHSQRPVEVRAVIREDDCIGCTKCIPACPVDAIVGTGKHMHTIFT 152


>gi|88706625|ref|ZP_01104328.1| Electron transport complex protein rnfB [Congregibacter litoralis
           KT71]
 gi|88699121|gb|EAQ96237.1| Electron transport complex protein rnfB [Congregibacter litoralis
           KT71]
          Length = 202

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 27/84 (32%), Gaps = 10/84 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E          E         EE CI C  C   CP  AI   +             + +
Sbjct: 97  EPTPLDAEHGAETETTVAFIIEEDCIGCTKCIQACPVDAILGAAKQ----------MHTV 146

Query: 99  DMIKCIYCGLCQEACPVDAIVEGP 122
              +C  C LC + CPVD I   P
Sbjct: 147 IASECTGCDLCVDPCPVDCIEMLP 170


>gi|316965841|gb|EFV50509.1| putative ABC transporter, ATP-binding protein [Trichinella
           spiralis]
          Length = 610

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 32/95 (33%), Gaps = 4/95 (4%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           K             R      +RC   K C  +C      +  G  C + T  +    I 
Sbjct: 3   KLPKPGHTEQSKITRIAIVNNDRCKP-KNCGQVCKKSCPVVRMGKLCIEVTPSSKIAFIS 61

Query: 100 MIKCIYCGLCQEACPVDAIVEGP---NFEFATETR 131
              CI CG+C + CP DAI       N E  T  R
Sbjct: 62  ESLCIGCGICVKKCPYDAISIINLPSNLEKHTTHR 96


>gi|301050123|ref|ZP_07197027.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 185-1]
 gi|300298145|gb|EFJ54530.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 185-1]
          Length = 579

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|293405128|ref|ZP_06649120.1| electron transport complex protein RnfC [Escherichia coli FVEC1412]
 gi|291427336|gb|EFF00363.1| electron transport complex protein RnfC [Escherichia coli FVEC1412]
          Length = 633

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|258452643|ref|ZP_05700644.1| formate dehydrogenase [Staphylococcus aureus A5948]
 gi|257859680|gb|EEV82527.1| formate dehydrogenase [Staphylococcus aureus A5948]
          Length = 715

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 3/78 (3%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQE 111
            Y     +CI C  C   C    +             R +  +   I+   C+ CG C  
Sbjct: 139 FYRYDPNQCILCGRCVEACQDIEVNETIRIDWDREHPRVIWDNDVPINESSCVSCGQCAT 198

Query: 112 ACPVDAIVEGPNFEFATE 129
            CP +A++E      A  
Sbjct: 199 VCPCNAMMEVNMEGNAGY 216



 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 17/68 (25%), Gaps = 8/68 (11%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105
           R        C  C      CE      A                      Y  D  +CI 
Sbjct: 90  RILEKHMLYCTVCDYNNGDCEIHNTMDAWGLQHQTYEYKEKPYEKDYGPFYRYDPNQCIL 149

Query: 106 CGLCQEAC 113
           CG C EAC
Sbjct: 150 CGRCVEAC 157


>gi|255102248|ref|ZP_05331225.1| putative nitroreductase [Clostridium difficile QCD-63q42]
          Length = 258

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 31/84 (36%), Gaps = 11/84 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +E CI C LC+  CP   I IE+               I    C+ CG C   CP  AI
Sbjct: 10  DKELCIGCGLCKNDCPVNNIIIENKKSV-----------IKKQDCLMCGHCAAICPTKAI 58

Query: 119 VEGPNFEFATETRQELYYDKERLL 142
                 E   E   +   D + LL
Sbjct: 59  ALTGFDEPPIELTNKPKLDSDELL 82



 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            +     ++D   CI CGLC+  CPV+ I+   
Sbjct: 1   MKYQHIIEVDKELCIGCGLCKNDCPVNNIIIEN 33


>gi|218885987|ref|YP_002435308.1| nitrite and sulphite reductase 4Fe-4S region [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218756941|gb|ACL07840.1| nitrite and sulphite reductase 4Fe-4S region [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 267

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 38/108 (35%), Gaps = 13/108 (12%)

Query: 12  FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71
           FL++ V    +   + F+   +   P           G           E C  C LCE 
Sbjct: 53  FLRDVVRG-PILHHHAFRVAVSA-CPNGCSRPHIADVGIIRAWTPGRASEACTRCGLCER 110

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           +CP  A+T+E                +    C+ CGLC + CP  A+ 
Sbjct: 111 LCPDHAMTVEEDG-----------PRLHPENCLSCGLCIKRCPEKALP 147


>gi|218780883|ref|YP_002432201.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218762267|gb|ACL04733.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 354

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 11/60 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E C  C+ C   C   AI +           +     I++ +CI CGLC   CP +AI  
Sbjct: 277 EDCTGCETCLERCQMGAIDM-----------KDDVAQINLDRCIGCGLCVTTCPTEAITL 325



 Score = 35.5 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 20/67 (29%), Gaps = 4/67 (5%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            N    C  C  C  +  A    I   P+  +         +    C  C  C E C + 
Sbjct: 237 QNPGGMCNCCGDCCGVLRA----INKHPKPVEIVFSNHYAVVSDEDCTGCETCLERCQMG 292

Query: 117 AIVEGPN 123
           AI    +
Sbjct: 293 AIDMKDD 299


>gi|218532920|ref|YP_002423736.1| formate dehydrogenase, subunit alpha [Methylobacterium
           chloromethanicum CM4]
 gi|218525223|gb|ACK85808.1| formate dehydrogenase, alpha subunit [Methylobacterium
           chloromethanicum CM4]
          Length = 989

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 3/98 (3%)

Query: 25  RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESG 83
            +F+     ++    +   + R+  + +        + CI C LC   C   Q   +   
Sbjct: 175 SHFWVQADVLDVTESRFPAAERWTSDVSHPAMSVNLDACIQCNLCVRACREVQVNDVIGM 234

Query: 84  PRCHDGTRRTVRYDIDM--IKCIYCGLCQEACPVDAIV 119
                G++    +D  M    C+ CG C +ACP  A++
Sbjct: 235 AYRAAGSKVVFDFDDPMGGSTCVACGECVQACPTGALM 272


>gi|15896720|ref|NP_350069.1| nitroreductase family protein [Clostridium acetobutylicum ATCC 824]
 gi|15026573|gb|AAK81409.1|AE007845_10 Nitroreductase family protein fused to ferredoxin domain
           [Clostridium acetobutylicum ATCC 824]
 gi|325510888|gb|ADZ22524.1| Nitroreductase family protein fused to ferredoxin domain
           [Clostridium acetobutylicum EA 2018]
          Length = 269

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 10/66 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +       ++C+ C +C   C          P      +     D+   KCI CG C   
Sbjct: 1   MNLITVNHDKCVKCGICVNEC----------PEQIIKMKENSPEDVCPQKCIACGHCVAV 50

Query: 113 CPVDAI 118
           CP +AI
Sbjct: 51  CPKEAI 56



 Score = 37.0 bits (84), Expect = 0.94,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 13/27 (48%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPN 123
            ++  KC+ CG+C   CP   I    N
Sbjct: 5   TVNHDKCVKCGICVNECPEQIIKMKEN 31


>gi|14521282|ref|NP_126757.1| indolepyruvate ferredoxin oxidoreductase, subunit alpha [Pyrococcus
           abyssi GE5]
 gi|5458500|emb|CAB49988.1| iorA-like indolepyruvate ferredoxin oxidoreductase related protein,
           alpha and beta subunits [Pyrococcus abyssi GE5]
          Length = 613

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 9/81 (11%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
           P  R           EE+C  CK C  +   QA+  +   R         +  ID + C 
Sbjct: 542 PVIRRGETREPPIIIEEKCTGCKACILLSGCQALIYDPETR---------KVKIDELICT 592

Query: 105 YCGLCQEACPVDAIVEGPNFE 125
            CG+C + CP DAI      E
Sbjct: 593 GCGICNQLCPFDAIKFREELE 613


>gi|119775574|ref|YP_928314.1| iron-sulfur cluster-binding protein [Shewanella amazonensis SB2B]
 gi|119768074|gb|ABM00645.1| iron-sulfur cluster-binding protein [Shewanella amazonensis SB2B]
          Length = 935

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 10/89 (11%)

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           +     I  +         +     D  + KCI CG C++ CP  A+   P    AT  R
Sbjct: 511 LLNPGVILNDDATVHVKNIKPCPVVDDLVDKCIECGFCEKTCPTSALNLTPRQRIATL-R 569

Query: 132 QELYYDKERLLNNGDRWESEIVRNIVTDS 160
           +       RL  +GD    E   + + D+
Sbjct: 570 E-----ISRLEASGD----EEAASRMRDA 589



 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 26/76 (34%), Gaps = 18/76 (23%)

Query: 57  PNGEERCIACKLCEAICPAQAITIES-----------------GPRCHDGTRRTVRYDID 99
            +  ++CI C  CE  CP  A+ +                           R   +YD+ 
Sbjct: 536 DDLVDKCIECGFCEKTCPTSALNLTPRQRIATLREISRLEASGDEEAASRMRDAAKYDVV 595

Query: 100 MIKCIYCGLCQEACPV 115
              C  C LC  ACPV
Sbjct: 596 -DTCAACQLCTIACPV 610


>gi|219668159|ref|YP_002458594.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219538419|gb|ACL20158.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 421

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 6/60 (10%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  CE +CP  AI++ +               +D   C+ CG+C  +CP   I  
Sbjct: 292 QECIGCGKCEKVCPVLAISMSTNAEGK------KVAQVDHEVCLGCGICVRSCPKKVIEL 345



 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 12/23 (52%), Positives = 14/23 (60%)

Query: 103 CIYCGLCQEACPVDAIVEGPNFE 125
           CI CG C++ CPV AI    N E
Sbjct: 294 CIGCGKCEKVCPVLAISMSTNAE 316


>gi|332161836|ref|YP_004298413.1| electron transport complex protein RnfB [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318605661|emb|CBY27159.1| electron transport complex protein RnfB [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325666066|gb|ADZ42710.1| electron transport complex protein RnfB [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
          Length = 207

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 24/78 (30%), Gaps = 10/78 (12%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C  C   CP  AI   +             + +    C  C LC   CP D
Sbjct: 111 FIDEANCIGCTKCIQACPVDAIVGAT----------RAMHTVLPDLCTGCDLCVSPCPTD 160

Query: 117 AIVEGPNFEFATETRQEL 134
            I   P        + +L
Sbjct: 161 CIEMIPVATTTANWKWDL 178


>gi|331663101|ref|ZP_08364011.1| electron transport complex protein RnfC [Escherichia coli TA143]
 gi|331058900|gb|EGI30877.1| electron transport complex protein RnfC [Escherichia coli TA143]
          Length = 640

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|300921314|ref|ZP_07137681.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 115-1]
 gi|300411733|gb|EFJ95043.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 115-1]
          Length = 576

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|242371958|ref|ZP_04817532.1| formate dehydrogenase, alpha subunit [Staphylococcus epidermidis
           M23864:W1]
 gi|242350337|gb|EES41938.1| formate dehydrogenase, alpha subunit [Staphylococcus epidermidis
           M23864:W1]
          Length = 989

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 30/89 (33%), Gaps = 13/89 (14%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P+EK               Y    ++CI C  C   C    +             R +  
Sbjct: 136 PYEKDYGP----------FYRYDPDQCILCGRCVEACQDVEVNETISIDWDREHPRVIWD 185

Query: 97  D---IDMIKCIYCGLCQEACPVDAIVEGP 122
           +   I+   C+ CG C   CP +A++E  
Sbjct: 186 NDVPINESSCVSCGQCATVCPCNAMMEVN 214



 Score = 41.2 bits (95), Expect = 0.047,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 16/68 (23%), Gaps = 8/68 (11%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105
           R        C  C      CE                             Y  D  +CI 
Sbjct: 95  RILEKHMLYCTVCDYNNGDCEIHNTMDEWGVQHQTYEYKEKPYEKDYGPFYRYDPDQCIL 154

Query: 106 CGLCQEAC 113
           CG C EAC
Sbjct: 155 CGRCVEAC 162


>gi|256810131|ref|YP_003127500.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus fervens AG86]
 gi|256793331|gb|ACV24000.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus fervens AG86]
          Length = 355

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 35/71 (49%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R +  +      +++C+ C +C   CPA AI ++         +     +++  KC+YC 
Sbjct: 141 RKKFVIGEVNINKDKCVLCGICAEYCPADAIDLKYNYPTPTNPKPITDIEVNKDKCVYCK 200

Query: 108 LCQEACPVDAI 118
           +C+  CP +AI
Sbjct: 201 VCEFVCPHNAI 211



 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 32/72 (44%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           GE   R     ++ C+ C +C  ICP  AI +        G     + DID   C  CGL
Sbjct: 19  GEVEKRELFWSDDACVGCGICADICPVGAIALGPLGAIAKGDVIAPKLDIDKDVCALCGL 78

Query: 109 CQEACPVDAIVE 120
           C  ACP DA+  
Sbjct: 79  CASACPFDAMDL 90



 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 1/77 (1%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           +     R     +E+C+ C+ CE +CP  AI++E               +I+  KC+ CG
Sbjct: 102 KYPKIKRDIKISQEKCVLCEQCEMVCPQLAISVE-RELAERKKFVIGEVNINKDKCVLCG 160

Query: 108 LCQEACPVDAIVEGPNF 124
           +C E CP DAI    N+
Sbjct: 161 ICAEYCPADAIDLKYNY 177



 Score = 43.5 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 8/83 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +       F+GE  +      E  C AC  C AICP  A+     P   D   +  R
Sbjct: 254 CPADAIEVEKPFKGELII-----DENACNACGACIAICPCGALEF---PAPKDKAEKVPR 305

Query: 96  YDIDMIKCIYCGLCQEACPVDAI 118
             ++   C+ CG C +ACPV+AI
Sbjct: 306 IVVNQNLCVLCGACTKACPVNAI 328



 Score = 40.9 bits (94), Expect = 0.057,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 9/107 (8%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT----IESGPRCHDGTRRTVRY 96
           G      +G+    +    ++ C  C LC + CP  A+      +S        +     
Sbjct: 51  GPLGAIAKGDVIAPKLDIDKDVCALCGLCASACPFDAMDLKINGKSIKEDEKYPKIKRDI 110

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR---QELYYDKER 140
            I   KC+ C  C+  CP  AI      E A   +    E+  +K++
Sbjct: 111 KISQEKCVLCEQCEMVCPQLAI--SVERELAERKKFVIGEVNINKDK 155



 Score = 38.5 bits (88), Expect = 0.28,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 8/80 (10%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQ--------AITIESGPRCHDGTRRTVRYDIDMIKCI 104
           +      +++C+ CK+CE +CP             ++  P+         +  +D   C+
Sbjct: 186 ITDIEVNKDKCVYCKVCEFVCPHNAIEVICYKCPMMKRIPQAELYNDINGKTVVDKDLCV 245

Query: 105 YCGLCQEACPVDAIVEGPNF 124
            CG C   CP DAI     F
Sbjct: 246 TCGWCAFICPADAIEVEKPF 265



 Score = 38.5 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 8/62 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++ C+ C  C  ICPA AI +E   +            ID   C  CG C   CP  A+
Sbjct: 240 DKDLCVTCGWCAFICPADAIEVEKPFKGEL--------IIDENACNACGACIAICPCGAL 291

Query: 119 VE 120
             
Sbjct: 292 EF 293



 Score = 34.3 bits (77), Expect = 6.2,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 101 IKCIYCGLCQEACPVDAIVEGP 122
             C+ CG+C + CPV AI  GP
Sbjct: 31  DACVGCGICADICPVGAIALGP 52


>gi|229585345|ref|YP_002843847.1| ATPase RIL [Sulfolobus islandicus M.16.27]
 gi|228020395|gb|ACP55802.1| ABC transporter related [Sulfolobus islandicus M.16.27]
          Length = 602

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 23/76 (30%), Gaps = 5/76 (6%)

Query: 47  FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
           F     +       ++C     C   CP        G           +  I    CI C
Sbjct: 2   FVRVAVINYDFCKPDKCNL--QCINFCPVD---RSGGKAIELSDIVKGKPVIYEETCIGC 56

Query: 107 GLCQEACPVDAIVEGP 122
           G+C + CP +AI    
Sbjct: 57  GICVKKCPYEAISIVN 72


>gi|188533913|ref|YP_001907710.1| electron transport complex protein RnfB [Erwinia tasmaniensis
           Et1/99]
 gi|226735419|sp|B2VEQ2|RNFB_ERWT9 RecName: Full=Electron transport complex protein rnfB
 gi|188028955|emb|CAO96821.1| Electron transport complex protein [Erwinia tasmaniensis Et1/99]
          Length = 191

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 27/96 (28%), Gaps = 10/96 (10%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E          E   +     E  CI C  C   CP  AI   +             + +
Sbjct: 92  EPQPLGAEEAREPERKVAWIDEANCIGCTKCIQACPVDAIVGAT----------RAMHTV 141

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134
               C  C LC   CP D I   P        + +L
Sbjct: 142 LSDICTGCDLCVAPCPTDCIEMRPVATTTANWKWDL 177


>gi|163853978|ref|YP_001642021.1| formate dehydrogenase, alpha subunit [Methylobacterium extorquens
           PA1]
 gi|163665583|gb|ABY32950.1| formate dehydrogenase, alpha subunit [Methylobacterium extorquens
           PA1]
          Length = 989

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 3/98 (3%)

Query: 25  RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESG 83
            +F+     ++    +   + R+  + +        + CI C LC   C   Q   +   
Sbjct: 175 SHFWVQADVLDVTESRFPAAERWTSDVSHPAMSVNLDACIQCNLCVRACREVQVNDVIGM 234

Query: 84  PRCHDGTRRTVRYDIDM--IKCIYCGLCQEACPVDAIV 119
                G++    +D  M    C+ CG C +ACP  A++
Sbjct: 235 AYRAAGSKVVFDFDDPMGGSTCVACGECVQACPTGALM 272


>gi|150390052|ref|YP_001320101.1| electron transport complex, RnfABCDGE type, B subunit [Alkaliphilus
           metalliredigens QYMF]
 gi|149949914|gb|ABR48442.1| electron transport complex, RnfABCDGE type, B subunit [Alkaliphilus
           metalliredigens QYMF]
          Length = 328

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 34/91 (37%), Gaps = 10/91 (10%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
             T      EK  T          ++    E+ CI C +C+  CP  AI  E        
Sbjct: 246 KCTNCFVCVEKCPTKAIEGQLEKRKKALIHEDLCIGCTICKKNCPVDAIEGELKENHK-- 303

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
                   I   KCI CG+C++ CP DAI  
Sbjct: 304 --------IIEDKCIGCGVCEQKCPKDAITM 326



 Score = 40.9 bits (94), Expect = 0.065,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 38/110 (34%), Gaps = 21/110 (19%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
                  P+E+         E      P     CI+CK+C   CP +AI  E+     D 
Sbjct: 185 KDVIDMVPYEQDVIITCNNKETGKVVRPKCGVACISCKICVKSCPFEAIDFENNLAFIDY 244

Query: 90  TRRTVRYD---------------------IDMIKCIYCGLCQEACPVDAI 118
            + T  +                      I    CI C +C++ CPVDAI
Sbjct: 245 EKCTNCFVCVEKCPTKAIEGQLEKRKKALIHEDLCIGCTICKKNCPVDAI 294



 Score = 38.5 bits (88), Expect = 0.30,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 5/83 (6%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV-----RYDIDMIKCIYCGL 108
           R      E+C  C  C A+CP   I +    +    T               + CI C +
Sbjct: 164 RIARINPEKCTGCTKCIAVCPKDVIDMVPYEQDVIITCNNKETGKVVRPKCGVACISCKI 223

Query: 109 CQEACPVDAIVEGPNFEFATETR 131
           C ++CP +AI    N  F    +
Sbjct: 224 CVKSCPFEAIDFENNLAFIDYEK 246



 Score = 37.4 bits (85), Expect = 0.72,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 21/66 (31%), Gaps = 10/66 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            + +  C+    C   CP  AI I                 I+  KC  C  C   CP D
Sbjct: 137 KSCKYGCLGLGTCVRECPFDAIDIVDNRIA----------RINPEKCTGCTKCIAVCPKD 186

Query: 117 AIVEGP 122
            I   P
Sbjct: 187 VIDMVP 192


>gi|126667559|ref|ZP_01738529.1| electron transport complex protein RnfC [Marinobacter sp. ELB17]
 gi|126627985|gb|EAZ98612.1| electron transport complex protein RnfC [Marinobacter sp. ELB17]
          Length = 636

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 10/72 (13%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACPVD 116
           + CI C  C      +A  +E  P+      +   +D    +++  CI CG C   CP  
Sbjct: 367 QPCIRCGQCA-----EACPMELLPQQLFWHAKATEFDKAEHLNLFDCIECGACSYVCP-S 420

Query: 117 AIVEGPNFEFAT 128
           +I     + FA 
Sbjct: 421 SIPLVQYYRFAK 432


>gi|14250935|emb|CAC39231.1| HymC protein [Eubacterium acidaminophilum]
          Length = 578

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 3/78 (3%)

Query: 59  GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115
              +CI C  C A+C   Q + I +       T     +   M    CIYCG C   CPV
Sbjct: 142 DPNKCILCGRCVAVCNKVQEVGILAFTNRGVETEVAPAFATSMADAPCIYCGQCVNVCPV 201

Query: 116 DAIVEGPNFEFATETRQE 133
            A+ E  + E   E  ++
Sbjct: 202 AALREKTDIEKVWEVLED 219


>gi|240141433|ref|YP_002965913.1| Tungsten-containing formate dehydrogenase alpha subunit
           [Methylobacterium extorquens AM1]
 gi|22652728|gb|AAN03799.1|AF489516_2 tungsten-containing formate dehydrogenase alpha subunit
           [Methylobacterium extorquens]
 gi|240011410|gb|ACS42636.1| Tungsten-containing formate dehydrogenase alpha subunit
           [Methylobacterium extorquens AM1]
          Length = 989

 Score = 48.2 bits (113), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 3/98 (3%)

Query: 25  RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESG 83
            +F+     ++    +   + R+  + +        + CI C LC   C   Q   +   
Sbjct: 175 SHFWVQADVLDVTESRFPAAERWTSDVSHPAMSVNLDACIQCNLCVRACREVQVNDVIGM 234

Query: 84  PRCHDGTRRTVRYDIDM--IKCIYCGLCQEACPVDAIV 119
                G++    +D  M    C+ CG C +ACP  A++
Sbjct: 235 AYRAAGSKVVFDFDDPMGGSTCVACGECVQACPTGALM 272


>gi|313672282|ref|YP_004050393.1| NADH dehydrogenase (quinone) [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312939038|gb|ADR18230.1| NADH dehydrogenase (quinone) [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 595

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 15/97 (15%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
             ++Y F+ +   +   +K       R   AL  +   E+RC  C +C  +CP  AIT E
Sbjct: 513 TTIKY-FRDEYEAHIKNKKCPA----RECSALIEFVVAEDRCKKCGICFKVCPVGAITWE 567

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            G              ID  KC+ C  C   CP +AI
Sbjct: 568 KGKVA----------YIDKSKCVKCRECIVNCPFNAI 594



 Score = 38.5 bits (88), Expect = 0.30,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 18/42 (42%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            I++           + + +   +C  CG+C + CPV AI  
Sbjct: 525 HIKNKKCPARECSALIEFVVAEDRCKKCGICFKVCPVGAITW 566


>gi|310827363|ref|YP_003959720.1| anaerobic sulfite reductase subunit C [Eubacterium limosum KIST612]
 gi|308739097|gb|ADO36757.1| anaerobic sulfite reductase subunit C [Eubacterium limosum KIST612]
          Length = 326

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 30/88 (34%), Gaps = 12/88 (13%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +         G   +      +++C++C  C   C           R   G  R   
Sbjct: 145 CPNDCMKVRMHDFGIMGMTEPQYNKDKCVSCNACVKACS----------RKSTGALRMEN 194

Query: 96  YDI--DMIKCIYCGLCQEACPVDAIVEG 121
           Y I  D  KCI CG C  ACPV A    
Sbjct: 195 YKIVRDESKCIGCGECVLACPVGAWRRS 222


>gi|308271653|emb|CBX28261.1| NADH-quinone oxidoreductase subunit F 2 [uncultured
           Desulfobacterium sp.]
          Length = 633

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 10/68 (14%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            AL  Y    E C  C+ C   CP +AI  E                +D  KCI CG+C 
Sbjct: 573 KALFHYEIDAEACTGCRSCAKKCPQEAIAGEKKQPHK----------LDQAKCIKCGICY 622

Query: 111 EACPVDAI 118
           +AC  DAI
Sbjct: 623 DACKFDAI 630



 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 16/40 (40%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            I+         +    Y+ID   C  C  C + CP +AI
Sbjct: 561 HIKHKKCPAGVCKALFHYEIDAEACTGCRSCAKKCPQEAI 600


>gi|283853097|ref|ZP_06370352.1| hydrogenase, Fe-only [Desulfovibrio sp. FW1012B]
 gi|283571495|gb|EFC19500.1| hydrogenase, Fe-only [Desulfovibrio sp. FW1012B]
          Length = 585

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 59  GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115
             ++CI C+ CE +C   Q   + SG            +++++    C  CG C   CPV
Sbjct: 149 DMDKCIMCRRCETMCNVVQTCGVLSGVNRGFTAVVAPAFEMNLADTVCTNCGQCVAVCPV 208

Query: 116 DAIVEGP 122
            A+VE  
Sbjct: 209 GALVEHD 215


>gi|182414281|ref|YP_001819347.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutus terrae
           PB90-1]
 gi|177841495|gb|ACB75747.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutus terrae
           PB90-1]
          Length = 279

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/118 (23%), Positives = 38/118 (32%), Gaps = 19/118 (16%)

Query: 20  FFLCLRY-FFKAKTTINYPFEKGSTSPRFRGEHALRR--YPNGEERCIACKLCEAICPAQ 76
            F  LR        T  YP      S R RG   +    + +       C      C  +
Sbjct: 1   MFETLRQSLNVGVATTAYPATPPEVSTRARGRPEIDWPAWQDARPAAAICPTGAINCRDE 60

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134
           A    +               +D+ KCI+CGLC +     AI      E A  TR+ L
Sbjct: 61  AGVRTAE--------------LDLGKCIFCGLCADV--DRAIRMTNQCELAVRTRERL 102


>gi|319779236|ref|YP_004130149.1| Electron transport complex protein RnfB [Taylorella equigenitalis
           MCE9]
 gi|317109260|gb|ADU92006.1| Electron transport complex protein RnfB [Taylorella equigenitalis
           MCE9]
          Length = 201

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/92 (28%), Positives = 32/92 (34%), Gaps = 10/92 (10%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E    +P       L +    EE CI C  C  +CP              G  + +   I
Sbjct: 65  EIKPVNPECGVTKPLHKAYILEEHCIGCTKCIQVCPVD---------SIIGANKWMHTVI 115

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
               C  C LC  ACPVD I   P+    TE 
Sbjct: 116 -PDFCTGCELCVLACPVDCIQMNPSLALWTED 146


>gi|257452828|ref|ZP_05618127.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. 3_1_5R]
 gi|257466806|ref|ZP_05631117.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|315917954|ref|ZP_07914194.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium gonidiaformans
           ATCC 25563]
 gi|317059369|ref|ZP_07923854.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. 3_1_5R]
 gi|313685045|gb|EFS21880.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. 3_1_5R]
 gi|313691829|gb|EFS28664.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium gonidiaformans
           ATCC 25563]
          Length = 1190

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 34/104 (32%), Gaps = 19/104 (18%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI----ESGPRCHDGT--- 90
           FE G+ S   RG           + CI C  C  +CP  AI      E   +        
Sbjct: 677 FENGTASFEKRGVAVDVPEWI-VDNCIQCNQCSYVCPHAAIRPFLITEEEKKASPVELIT 735

Query: 91  ---------RRTVRYDIDMIKCIYCGLCQEACPVD--AIVEGPN 123
                      T R  +  + C+ CG C   CP    A+V  P 
Sbjct: 736 KKAVGKGLEDVTYRIQVTPLDCVGCGSCVNVCPAPGKALVMKPI 779


>gi|239904887|ref|YP_002951625.1| Fe hydrogenase [Desulfovibrio magneticus RS-1]
 gi|239794750|dbj|BAH73739.1| Fe hydrogenase [Desulfovibrio magneticus RS-1]
          Length = 585

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 59  GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115
             ++CI C+ CE +C   Q   + SG            +++++    C  CG C   CPV
Sbjct: 149 DMDKCIMCRRCETMCNDIQTCGVLSGVNRGFTAVVAPAFEMNLADTVCTNCGQCVAVCPV 208

Query: 116 DAIVEGPN 123
            A+VE  N
Sbjct: 209 GALVENDN 216


>gi|238895009|ref|YP_002919743.1| electron transport complex protein RnfC [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238547325|dbj|BAH63676.1| electron transport complex protein [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 753

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 40/112 (35%), Gaps = 13/112 (11%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEKGCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHNLADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            I     F     E A   ++E     +R      R+E+   R +  +   R
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEE-----QRAAEAKARFEARQAR-LEREKAAR 474


>gi|237735082|ref|ZP_04565563.1| 4Fe-4S ferredoxin [Mollicutes bacterium D7]
 gi|229381858|gb|EEO31949.1| 4Fe-4S ferredoxin [Coprobacillus sp. D7]
          Length = 367

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 11/60 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +++CI C  C  IC     +I                 ID  KC+ CG C   CP DAI
Sbjct: 191 EQDKCIGCGQCIKICAHNGTSITDHKAS-----------IDHDKCVGCGRCIGVCPKDAI 239


>gi|222111964|ref|YP_002554228.1| 4fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Acidovorax ebreus TPSY]
 gi|221731408|gb|ACM34228.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidovorax
           ebreus TPSY]
          Length = 687

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 34/118 (28%), Gaps = 13/118 (11%)

Query: 20  FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79
             L L +          P               +      ++RC  C  C + CPA A+ 
Sbjct: 519 LELALDHLVTNAPARELPEAIALPKGPSPWGTVVV----DKDRCTLCLSCVSACPAGALQ 574

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
                          +       C+ CGLC+  CP +AI   P      E  Q    +
Sbjct: 575 DNPQA---------PQLRFTEQNCVQCGLCERTCPENAIALQPRMLLTPERGQPRVLN 623



 Score = 41.6 bits (96), Expect = 0.037,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 9/55 (16%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C  C  IC A+AI+ +             +  ++   C+ CG C   CP  A+
Sbjct: 306 VGCNACVDICSAEAISSDP---------VRQQVVVNPHLCVGCGACTTVCPTGAM 351



 Score = 37.8 bits (86), Expect = 0.58,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 34/97 (35%), Gaps = 19/97 (19%)

Query: 45  PRFRGEHALRRYPN---GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
             + G  AL+   +     + C  C  C   CP  AI ++              Y IDM 
Sbjct: 164 KGWLGRFALQWTADNPIDLDLCTRCNACVTACPENAIGLD--------------YQIDMT 209

Query: 102 KCIYCGLCQEACPVD-AIVEGPNFEFATETRQELYYD 137
            C     C +AC V  AI      E  ++   +L  D
Sbjct: 210 ACTGHRDCVKACAVAGAIRFEREAEVQSQDF-DLVLD 245


>gi|11498558|ref|NP_069786.1| glutamate synthase (gltB) [Archaeoglobus fulgidus DSM 4304]
 gi|2649642|gb|AAB90287.1| glutamate synthase (gltB) [Archaeoglobus fulgidus DSM 4304]
          Length = 511

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 18/108 (16%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           ++RCI C++CE  C       +                 D +KC+ C  C   CP +A+V
Sbjct: 21  QDRCIRCRVCERQCGFNVHWYDEE---------MDMMREDEMKCVGCQRCAVMCPTNALV 71

Query: 120 EGP---NFEF-ATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
             P   N++  A  TR+ L   K++    G      ++     D PYR
Sbjct: 72  VKPHPGNYKPNANWTRERLQDLKKQAETGG-----VLLTGSGNDKPYR 114


>gi|27381853|ref|NP_773382.1| glutamate synthase small subunit [Bradyrhizobium japonicum USDA
           110]
 gi|27355022|dbj|BAC52007.1| blr6742 [Bradyrhizobium japonicum USDA 110]
          Length = 599

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 30/105 (28%), Gaps = 20/105 (19%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
             K +     R  +   +       CI C  C  ICP   IT        D  +R     
Sbjct: 475 DVKLALGEAHRCLNCDVQTVFSTSLCIECDACVDICPMDCITFTENGEEPDLRQRLKAPS 534

Query: 98  IDMIK--------------------CIYCGLCQEACPVDAIVEGP 122
           +   +                    C++CGLC E CP  A     
Sbjct: 535 LHPDQDLYVSSDLKTGRVMVKDEDVCLHCGLCAERCPTGAWDMQK 579



 Score = 34.7 bits (78), Expect = 4.1,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 12/23 (52%)

Query: 103 CIYCGLCQEACPVDAIVEGPNFE 125
           CI C  C + CP+D I    N E
Sbjct: 500 CIECDACVDICPMDCITFTENGE 522


>gi|306820054|ref|ZP_07453702.1| hydrogenase subunit [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304551832|gb|EFM39775.1| hydrogenase subunit [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 503

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 6/66 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQEA 112
            EE+CI C  C+  CP  AI     P                R  I+  KC+ CG+C   
Sbjct: 148 DEEKCIRCGRCKDNCPYNAIVFFDRPCAAACGVNAIESDYLGRAIINQDKCVTCGMCLVH 207

Query: 113 CPVDAI 118
           CP  AI
Sbjct: 208 CPFGAI 213



 Score = 38.5 bits (88), Expect = 0.28,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 13/62 (20%)

Query: 61  ERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             C  C    C  +CP  AI++                 ID  KCI CG C++ CP +AI
Sbjct: 119 NNCRKCLAHPCIQVCPVNAISMGQYSTI-----------IDEEKCIRCGRCKDNCPYNAI 167

Query: 119 VE 120
           V 
Sbjct: 168 VF 169


>gi|300931505|ref|ZP_07146822.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 187-1]
 gi|300460699|gb|EFK24192.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 187-1]
          Length = 553

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 345 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 402

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 403 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 451


>gi|300723257|ref|YP_003712557.1| putative NADH dehydrogenase subunit/ oxidoreductase [Xenorhabdus
           nematophila ATCC 19061]
 gi|297629774|emb|CBJ90382.1| putative NADH dehydrogenase subunit/ oxidoreductase [Xenorhabdus
           nematophila ATCC 19061]
          Length = 708

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           CI C LC   CPA  +  +       G       +  +  CI CG C   CP
Sbjct: 377 CIRCGLCVEACPAG-LLPQQLYWFSRGQEHEKAKNHHLFDCIECGACAYVCP 427



 Score = 37.4 bits (85), Expect = 0.75,   Method: Composition-based stats.
 Identities = 10/15 (66%), Positives = 10/15 (66%)

Query: 100 MIKCIYCGLCQEACP 114
              CI CGLC EACP
Sbjct: 374 EEACIRCGLCVEACP 388


>gi|290475318|ref|YP_003468206.1| putative NADH dehydrogenase subunit/ oxidoreductase [Xenorhabdus
           bovienii SS-2004]
 gi|289174639|emb|CBJ81433.1| putative NADH dehydrogenase subunit/ oxidoreductase [Xenorhabdus
           bovienii SS-2004]
          Length = 668

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           CI C LC   CPA  +  +       G       +  +  CI CG C   CP
Sbjct: 377 CIRCGLCVEACPAG-LLPQQLYWFSRGQEHKKAKNHHLFDCIECGACAYVCP 427



 Score = 37.4 bits (85), Expect = 0.77,   Method: Composition-based stats.
 Identities = 10/15 (66%), Positives = 10/15 (66%)

Query: 100 MIKCIYCGLCQEACP 114
              CI CGLC EACP
Sbjct: 374 EEACIRCGLCVEACP 388


>gi|258625037|ref|ZP_05719958.1| iron-sulfur cluster-binding protein [Vibrio mimicus VM603]
 gi|258582670|gb|EEW07498.1| iron-sulfur cluster-binding protein [Vibrio mimicus VM603]
          Length = 553

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 9/75 (12%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             C  C  C A+CP +A+                        C+ CGLC +ACP   +  
Sbjct: 418 SDCTLCMSCVAVCPTRALHPAGDSPA---------LRFIEQDCVQCGLCVKACPEQVLSA 468

Query: 121 GPNFEFATETRQELY 135
            P   ++   RQ + 
Sbjct: 469 TPQLNWSKAARQGVV 483



 Score = 40.9 bits (94), Expect = 0.057,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 14/81 (17%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           C+ C   CPA A++ E   +         R  I+   C   G C  ACP +AI     + 
Sbjct: 186 CERCVDACPAGALSSEGSDQTGH------RIQINPYLCQGVGTCATACPTEAIH----YA 235

Query: 126 FA-TETRQELYYDKERLLNNG 145
                  Q+     ERLL N 
Sbjct: 236 LPNPTDTQKFI---ERLLANY 253



 Score = 33.9 bits (76), Expect = 7.1,   Method: Composition-based stats.
 Identities = 6/23 (26%), Positives = 8/23 (34%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIV 119
           +     C  C  C   CP  A+ 
Sbjct: 414 ECQTSDCTLCMSCVAVCPTRALH 436


>gi|256840652|ref|ZP_05546160.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737924|gb|EEU51250.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 301

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 26/77 (33%), Gaps = 11/77 (14%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                 +E CI C  C  +CP+   T E         R           CI CG C + C
Sbjct: 16  MTLNIDQESCIKCGKCVRVCPSDIFTQERAGETIGLVRV--------ESCIVCGHCVDVC 67

Query: 114 PVDAIVEGPNFEFATET 130
           P  ++      EF  E 
Sbjct: 68  PTGSVSHS---EFPPEK 81



 Score = 37.4 bits (85), Expect = 0.72,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 91  RRTVRYDIDMIKCIYCGLCQEACP 114
           R+ +  +ID   CI CG C   CP
Sbjct: 13  RKRMTLNIDQESCIKCGKCVRVCP 36


>gi|225569273|ref|ZP_03778298.1| hypothetical protein CLOHYLEM_05355 [Clostridium hylemonae DSM
           15053]
 gi|225162072|gb|EEG74691.1| hypothetical protein CLOHYLEM_05355 [Clostridium hylemonae DSM
           15053]
          Length = 291

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 24/76 (31%), Gaps = 15/76 (19%)

Query: 47  FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
           F    AL RY   E  CI C  C   C       E                     CI C
Sbjct: 220 FFNPVALYRYQVEESDCIKCGKCRKTCKMDIKVWEQPNSPE---------------CIRC 264

Query: 107 GLCQEACPVDAIVEGP 122
           G C +ACP  AI  G 
Sbjct: 265 GDCVKACPTKAIKRGK 280


>gi|289208953|ref|YP_003461019.1| electron transporter subunit C [Thioalkalivibrio sp. K90mix]
 gi|288944584|gb|ADC72283.1| electron transport complex, RnfABCDGE type, C subunit
           [Thioalkalivibrio sp. K90mix]
          Length = 541

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 11/95 (11%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            CI C  C A+CPAQ +  +   +           D  +  CI CG C   CP   I   
Sbjct: 372 PCIRCAECAAVCPAQLLPQQLYWQAKAKDF-DAIQDYGLFDCIECGCCAYVCP-SNIPLV 429

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNI 156
             + +A    +   + +E+     +R +S+I R  
Sbjct: 430 QYYRYA----KNEIWAREK-----ERHKSDIARER 455


>gi|206900301|ref|YP_002250051.1| glutamate synthase [Dictyoglomus thermophilum H-6-12]
 gi|206739404|gb|ACI18462.1| glutamate synthase [Dictyoglomus thermophilum H-6-12]
          Length = 502

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 22/65 (33%), Gaps = 9/65 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E +CI CK+C   C       +             R   D  +C+ C  C   CP  AI
Sbjct: 14  DETKCIRCKVCVRQCANDVHEYDEEED---------RIISDNSRCVGCHRCVALCPTKAI 64

Query: 119 VEGPN 123
               N
Sbjct: 65  TIMRN 69


>gi|194292353|ref|YP_002008260.1| benzoyl-CoA dioxygenase component a [Cupriavidus taiwanensis LMG
           19424]
 gi|193226257|emb|CAQ72206.1| Benzoyl-CoA dioxygenase component A [Cupriavidus taiwanensis LMG
           19424]
          Length = 426

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 11/68 (16%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             ++++    E CI C  CEA CP  AIT +S             Y +D  KC  C  C 
Sbjct: 7   QVIKQHLIDPEICIRCNTCEATCPVGAITHDS-----------RNYVVDADKCNLCMACI 55

Query: 111 EACPVDAI 118
             CP  +I
Sbjct: 56  SPCPTGSI 63



 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 12/23 (52%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVE 120
           ID   CI C  C+  CPV AI  
Sbjct: 14  IDPEICIRCNTCEATCPVGAITH 36


>gi|187779551|ref|ZP_02996024.1| hypothetical protein CLOSPO_03147 [Clostridium sporogenes ATCC
           15579]
 gi|187773176|gb|EDU36978.1| hypothetical protein CLOSPO_03147 [Clostridium sporogenes ATCC
           15579]
          Length = 631

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 10/63 (15%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           +    ++CI C  C   CP   I            +   ++ I+  KCI CG C  ACPV
Sbjct: 576 HYEITDKCIGCTKCARGCPVSCIIG----------KVKEKHFINQEKCIKCGNCYSACPV 625

Query: 116 DAI 118
            AI
Sbjct: 626 GAI 628


>gi|218782910|ref|YP_002434228.1| NADH dehydrogenase (quinone) [Desulfatibacillum alkenivorans AK-01]
 gi|218764294|gb|ACL06760.1| NADH dehydrogenase (quinone) [Desulfatibacillum alkenivorans AK-01]
          Length = 618

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 10/66 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L  Y   +  C  C LC   CP  AIT                + +D  KCI CG+C +A
Sbjct: 560 LFHYEIVDGTCTGCGLCARKCPQDAITGAKKE----------THVLDQDKCIKCGICYDA 609

Query: 113 CPVDAI 118
           C  +AI
Sbjct: 610 CKFNAI 615



 Score = 41.2 bits (95), Expect = 0.041,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 8/81 (9%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
                     I          +    Y+I    C  CGLC   CP DAI           
Sbjct: 537 MYFRHEYEAHIRDKKCPAGVCKPLFHYEIVDGTCTGCGLCARKCPQDAI--------TGA 588

Query: 130 TRQELYYDKERLLNNGDRWES 150
            ++    D+++ +  G  +++
Sbjct: 589 KKETHVLDQDKCIKCGICYDA 609


>gi|123442265|ref|YP_001006246.1| electron transport complex protein RnfB [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122089226|emb|CAL12072.1| putative iron-sulfur protein [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 207

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 24/78 (30%), Gaps = 10/78 (12%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C  C   CP  AI   +             + +    C  C LC   CP D
Sbjct: 111 FIDEANCIGCTKCIQACPVDAIVGAT----------RAMHTVLPDLCTGCDLCVSPCPTD 160

Query: 117 AIVEGPNFEFATETRQEL 134
            I   P        + +L
Sbjct: 161 CIEMIPVATTTANWKWDL 178


>gi|127512996|ref|YP_001094193.1| electron transport complex protein RnfC [Shewanella loihica PV-4]
 gi|126638291|gb|ABO23934.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella
           loihica PV-4]
          Length = 870

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/108 (26%), Positives = 42/108 (38%), Gaps = 13/108 (12%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACPVD 116
           + CI C  C   CPAQ +     P+      +   YD     ++  CI CG C   CP  
Sbjct: 382 QPCIRCGECAQACPAQLL-----PQQLFWHAKAQEYDKAASYNLRDCIECGCCSYVCP-S 435

Query: 117 AIVEGPNFEFATET-RQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            I     +  A    RQE    K+  L    R++S  +R +  +   R
Sbjct: 436 DIPLVEYYRVAKSALRQEAEEKKQAELAK-QRFDSRTLR-LEQEKQAR 481


>gi|330015738|ref|ZP_08308240.1| electron transport complex, RnfABCDGE type, C subunit [Klebsiella
           sp. MS 92-3]
 gi|328531063|gb|EGF57918.1| electron transport complex, RnfABCDGE type, C subunit [Klebsiella
           sp. MS 92-3]
          Length = 565

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 40/112 (35%), Gaps = 13/112 (11%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 336 PQEEKGCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHNLADCIECGACAWVCP-S 393

Query: 117 AIVEGPNF-----EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            I     F     E A   ++E     +R      R+E+   R +  +   R
Sbjct: 394 NIPLVQYFRQEKAEIAAIRQEE-----QRAAEAKARFEARQAR-LEREKAAR 439


>gi|324014761|gb|EGB83980.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 60-1]
          Length = 574

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|320658803|gb|EFX26477.1| electron transport complex protein RnfC [Escherichia coli O55:H7
           str. USDA 5905]
          Length = 631

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|302341926|ref|YP_003806455.1| molybdopterin oxidoreductase [Desulfarculus baarsii DSM 2075]
 gi|301638539|gb|ADK83861.1| molybdopterin oxidoreductase [Desulfarculus baarsii DSM 2075]
          Length = 778

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 59  GEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
             ++C+ C  C A C       AI +  G R            +D  +C  CG C +ACP
Sbjct: 142 DFKKCVMCGRCVAACNEIQVNMAIPLPFGRREDRPLPAGWLPLVDHDRCTQCGECVQACP 201

Query: 115 VDAIVEGP 122
           V A+ E  
Sbjct: 202 VGALTEKK 209



 Score = 37.4 bits (85), Expect = 0.73,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 21/73 (28%), Gaps = 4/73 (5%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93
           I  PF +    P   G   L       +RC  C  C   CP  A+T +           T
Sbjct: 165 IPLPFGRREDRPLPAGWLPLV----DHDRCTQCGECVQACPVGALTEKKAKGRGRSWELT 220

Query: 94  VRYDIDMIKCIYC 106
                     + C
Sbjct: 221 KVRTTCPHCGVGC 233


>gi|302336898|ref|YP_003802104.1| NADH dehydrogenase (quinone) [Spirochaeta smaragdinae DSM 11293]
 gi|301634083|gb|ADK79510.1| NADH dehydrogenase (quinone) [Spirochaeta smaragdinae DSM 11293]
          Length = 632

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 35/99 (35%), Gaps = 15/99 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            LRYF +   +     ++           AL  +   E  C  C  C   CP  AI+ E 
Sbjct: 546 TLRYFRQEYESHVV-DKRCPVGAC----KALSDFVIDESLCKGCTACAKACPVGAISGE- 599

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
                    +   + ID  +CI CG C   C   AI  G
Sbjct: 600 ---------KKAPHTIDTERCIRCGACMATCRFGAIRRG 629


>gi|301329557|ref|ZP_07222340.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 78-1]
 gi|300844326|gb|EFK72086.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 78-1]
          Length = 576

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|300936047|ref|ZP_07150994.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 21-1]
 gi|300458773|gb|EFK22266.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 21-1]
          Length = 578

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|217966522|ref|YP_002352028.1| 4Fe-4S ferredoxin, iron-sulphur binding, conserved site
           [Dictyoglomus turgidum DSM 6724]
 gi|217335621|gb|ACK41414.1| 4Fe-4S ferredoxin, iron-sulphur binding, conserved site
           [Dictyoglomus turgidum DSM 6724]
          Length = 559

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 3/102 (2%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV 94
           FE  +   RF  +++         RC+ C+ C   C   A      E            +
Sbjct: 121 FEFPTYERRFPVDNSHEFIMMDHNRCVLCRRCVRACSEVAGHFVLGEMERGIDTMIIADM 180

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
              +    C  CGLC + CP  AI++  +     E + E+ Y
Sbjct: 181 DVPLGNSSCTSCGLCAQVCPTGAIIDKRSSYLGREVQSEIIY 222


>gi|209809197|ref|YP_002264735.1| NAD-dependent formate dehydrogenase alpha subunit [Aliivibrio
           salmonicida LFI1238]
 gi|208010759|emb|CAQ81152.1| NAD-dependent formate dehydrogenase alpha subunit [Aliivibrio
           salmonicida LFI1238]
          Length = 1385

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 10/70 (14%)

Query: 59  GEERCIACKLCEAICPAQAITI----------ESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
              RCI+C  C   C  + +             +  R          YD+    C+ CG 
Sbjct: 616 DANRCISCGQCVEACNEKGVHGVLSFMKNEDGTNASRPECRAGFEHGYDMGNSNCVQCGA 675

Query: 109 CQEACPVDAI 118
           C +ACPV A+
Sbjct: 676 CIQACPVGAL 685


>gi|84514634|ref|ZP_01001998.1| formate dehydrogenase, alpha subunit [Loktanella vestfoldensis
           SKA53]
 gi|84511685|gb|EAQ08138.1| formate dehydrogenase, alpha subunit [Loktanella vestfoldensis
           SKA53]
          Length = 921

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/130 (19%), Positives = 38/130 (29%), Gaps = 23/130 (17%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           L +  GA  + +  F           E                     + CI C LC   
Sbjct: 112 LWDMAGAQGVAVSRFPAKA-------EHIPLLDDSH-----VAMSVNLDACIQCGLCVRA 159

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDM----IKCIYCGLCQEACPVDAI------VEGP 122
           C  +    +       G      +D+D       C+ CG C +ACP  A+       E  
Sbjct: 160 CR-EVQVNDVIGMAGRGGTAYPVFDMDDPMGGSSCVACGECVQACPTGALLPATVTDENQ 218

Query: 123 NFEFATETRQ 132
             + A   R+
Sbjct: 219 QGDTADYDRE 228


>gi|311694180|gb|ADP97053.1| electron transport complex, RnfABCDGE type, C subunit [marine
           bacterium HP15]
          Length = 580

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 20/103 (19%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACPVD 116
           + CI C  C      +A  +E  P+      +   ++    +++  CI CG C   CP  
Sbjct: 338 QPCIRCGQCA-----EACPMELLPQQLFWHAKATEFEKAEHLNLFDCIECGACSYVCP-S 391

Query: 117 AIVEGPNFEFA-TETR----QELYYDKERLLNNGDRWESEIVR 154
           +I     + FA  E R    ++L  D+ R     +R+E+   R
Sbjct: 392 SIPLVQYYRFAKGEIRAQQAEQLKADRAR-----ERFEARQAR 429


>gi|289423109|ref|ZP_06424924.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Peptostreptococcus
           anaerobius 653-L]
 gi|289156440|gb|EFD05090.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Peptostreptococcus
           anaerobius 653-L]
          Length = 1177

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 28/87 (32%), Gaps = 18/87 (20%)

Query: 57  PNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRYDIDMI- 101
               + CI C  C  +CP                A    +  +        ++Y I +  
Sbjct: 684 EWQIDNCIQCNQCSLVCPHAAIRPFLLTEEEAKNAPENFNTKKAMGKGLENLQYRIQVSA 743

Query: 102 -KCIYCGLCQEACP--VDAIVEGPNFE 125
             C  CG C + CP    A+V  P  E
Sbjct: 744 MDCTGCGNCADVCPAKTKALVMKPMEE 770


>gi|288927506|ref|ZP_06421353.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Prevotella sp.
           oral taxon 317 str. F0108]
 gi|288330340|gb|EFC68924.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Prevotella sp.
           oral taxon 317 str. F0108]
          Length = 1190

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 24/82 (29%), Gaps = 16/82 (19%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIE---------------SGPRCHDGTRR 92
           RG  A        E CI C  C  +CP   I                             
Sbjct: 679 RGVEAFNPEWT-AENCIQCNKCAYVCPHACIRPFVLDEEEMKSFEDATLEMKVPKPMAGM 737

Query: 93  TVRYDIDMIKCIYCGLCQEACP 114
             R  + ++ C+ CG C + CP
Sbjct: 738 NFRIQVSVLDCVGCGNCADVCP 759


>gi|284051681|ref|ZP_06381891.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Arthrospira
           platensis str. Paraca]
 gi|291570294|dbj|BAI92566.1| pyruvate flavodoxin oxidoreductase [Arthrospira platensis NIES-39]
          Length = 1193

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 40/146 (27%), Gaps = 36/146 (24%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPR 85
              TS   +   A        + C+ C  C  +CP                A        
Sbjct: 667 PTGTSKWEKRNVAQEIPVWDADVCVQCGKCIMVCPHAVIRGKAYDESALNGAPETFKTTA 726

Query: 86  CHDGTRRTVRYDID--MIKCIYCGLCQEACP--------VDAIVEGPNFEFATETRQ--E 133
             D      ++ I      C  CG+C + CP          AI            R   E
Sbjct: 727 VRDKAFEGQKFTIQVSPEDCTGCGICVDVCPAKNKSMPSKKAINMEYQPPIRATERDNWE 786

Query: 134 LYYDKERLLNNGDRWESEIVRNIVTD 159
            + +    L N DR      RN+ +D
Sbjct: 787 FFLN----LPNPDR------RNLRSD 802


>gi|268589519|ref|ZP_06123740.1| electron transport complex protein RnfC [Providencia rettgeri DSM
           1131]
 gi|291315188|gb|EFE55641.1| electron transport complex protein RnfC [Providencia rettgeri DSM
           1131]
          Length = 781

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 40/109 (36%), Gaps = 19/109 (17%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C LC   CPA  +  +       G         ++  CI CG C   CP   I    
Sbjct: 378 CIRCGLCVDACPAG-LLPQQLYWFSKGDEHEKAQKHNLFDCIECGACAYVCP-SNIPLVQ 435

Query: 123 NF--------EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            +        E A E R+     + +L     R+E++ +R +  D   R
Sbjct: 436 YYRQEKAEIREIAQEERRAA---EAKL-----RFEAKQLR-MERDKQAR 475



 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 9/15 (60%), Positives = 10/15 (66%)

Query: 100 MIKCIYCGLCQEACP 114
              CI CGLC +ACP
Sbjct: 375 EEACIRCGLCVDACP 389


>gi|260911664|ref|ZP_05918244.1| pyruvate-ferredoxin oxidoreductase [Prevotella sp. oral taxon 472
           str. F0295]
 gi|260634212|gb|EEX52322.1| pyruvate-ferredoxin oxidoreductase [Prevotella sp. oral taxon 472
           str. F0295]
          Length = 1190

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 24/82 (29%), Gaps = 16/82 (19%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIE---------------SGPRCHDGTRR 92
           RG  A        E CI C  C  +CP   I                             
Sbjct: 679 RGVEAFNPEWT-AENCIQCNKCAYVCPHACIRPFVLDEEEMKGFEDATLEMKVPKPMAGM 737

Query: 93  TVRYDIDMIKCIYCGLCQEACP 114
             R  + ++ C+ CG C + CP
Sbjct: 738 NFRIQVSVLDCVGCGNCADVCP 759


>gi|238762649|ref|ZP_04623619.1| Electron transport complex protein rnfB [Yersinia kristensenii ATCC
           33638]
 gi|238699294|gb|EEP92041.1| Electron transport complex protein rnfB [Yersinia kristensenii ATCC
           33638]
          Length = 207

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 25/78 (32%), Gaps = 10/78 (12%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              EE CI C  C   CP  AI   +             + +    C  C LC   CP D
Sbjct: 111 FIDEENCIGCTKCIQACPVDAIVGAT----------RAMHTVLPDLCTGCDLCVSPCPTD 160

Query: 117 AIVEGPNFEFATETRQEL 134
            I   P        + +L
Sbjct: 161 CIEMIPVATTTANWKWDL 178


>gi|229497131|ref|ZP_04390834.1| ferredoxin [Porphyromonas endodontalis ATCC 35406]
 gi|229315948|gb|EEN81878.1| ferredoxin [Porphyromonas endodontalis ATCC 35406]
          Length = 320

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 27/86 (31%), Gaps = 11/86 (12%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P  +         +         +  CI C  C   CP  AIT+E+              
Sbjct: 194 PKNRRVFVSCVNKDKGGVAMKACKNACIGCGKCAKECPFGAITVENNLAY---------- 243

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGP 122
            ID  KC  C  C   CP  AI E  
Sbjct: 244 -IDHTKCRLCRKCVAVCPTHAIHEEN 268



 Score = 41.6 bits (96), Expect = 0.039,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 8/81 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCH--------DGTRRTVRYDIDMIKCIYCGLCQ 110
            +++C +C  C   CP   I +      +        +  +  V        CI CG C 
Sbjct: 168 DQDKCTSCGACVKACPKTIIELRKKGPKNRRVFVSCVNKDKGGVAMKACKNACIGCGKCA 227

Query: 111 EACPVDAIVEGPNFEFATETR 131
           + CP  AI    N  +   T+
Sbjct: 228 KECPFGAITVENNLAYIDHTK 248


>gi|218130267|ref|ZP_03459071.1| hypothetical protein BACEGG_01855 [Bacteroides eggerthii DSM 20697]
 gi|217987551|gb|EEC53879.1| hypothetical protein BACEGG_01855 [Bacteroides eggerthii DSM 20697]
          Length = 1185

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 32/90 (35%), Gaps = 15/90 (16%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGP 84
           E+G+     RG  A     N  E CI C  C  +CP                A   +   
Sbjct: 667 EQGTAKYEKRGVAAFVPEWN-PENCIQCNKCAYVCPHASIRPFVLDAEEQKGAEFAQLKA 725

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                   T R  +D++ C+ CG C + CP
Sbjct: 726 VGKAFDGMTFRMQVDVLDCLGCGNCADICP 755


>gi|188589483|ref|YP_001920962.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium botulinum E3 str. Alaska E43]
 gi|188499764|gb|ACD52900.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium botulinum E3 str. Alaska E43]
          Length = 896

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/135 (22%), Positives = 45/135 (33%), Gaps = 15/135 (11%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
            K T    FE    +      H +            C  C   C   A  I    + +D 
Sbjct: 223 RKITREEAFEIIKRAEENGLMHQIPNADGPGNTHAICNCCG--CSCYATRIAGMFQNNDM 280

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVE-------GPNFEFATETRQELYYDKERLL 142
            R      +D  KC+ CG C + CPV+A+          P  E   + R++  Y+ E   
Sbjct: 281 VRSNYVSKVDKDKCVACGECVQVCPVNALKLGQKLCTKTPIVE---KKREDFAYNTEW-- 335

Query: 143 NNGDRWESEIVRNIV 157
              D+W  +   N  
Sbjct: 336 -GEDKWNVDYRINRE 349



 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 3/86 (3%)

Query: 78  ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
            T E   +  +         +D  +CI CG C   C  DAI     ++  + T +EL   
Sbjct: 812 FTEEQMKKETERCLGCGATTVDQDQCIGCGACTTRCKFDAITLYRKYDAQSVTIKEL--- 868

Query: 138 KERLLNNGDRWESEIVRNIVTDSPYR 163
           K +++ N  + +  I    +  S  R
Sbjct: 869 KPKVIKNIIKRKFVIKARKIKKSFKR 894


>gi|160624920|gb|ABO42543.2| hydrogenase [Clostridium butyricum]
          Length = 574

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 3/78 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPV 115
              +C+ C  C A C  +  T           R+    +    D   C+ CG C  ACPV
Sbjct: 143 DRSKCVLCGRCVAACKEKTGTGNIEIAGKGPDRKVQAIEGKCFDETNCLLCGQCVAACPV 202

Query: 116 DAIVEGPNFEFATETRQE 133
            A+ E P+ +   E  ++
Sbjct: 203 AALNEKPHIDRVKEALED 220


>gi|154498756|ref|ZP_02037134.1| hypothetical protein BACCAP_02747 [Bacteroides capillosus ATCC
           29799]
 gi|150272146|gb|EDM99350.1| hypothetical protein BACCAP_02747 [Bacteroides capillosus ATCC
           29799]
          Length = 600

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 15/99 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            L++ F+ +   +   ++            L RY     +C  C LC   CPA AI+   
Sbjct: 517 TLKH-FRDEYVAHVVEKRCPAGVCKN----LLRYTIDPAKCKGCTLCAKNCPAGAISG-- 569

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
                        + ID  KCI CG+C + C   AI++G
Sbjct: 570 --------AVRAPHVIDQSKCIKCGVCMDNCRFSAILKG 600


>gi|332703001|ref|ZP_08423089.1| response regulator receiver protein [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332553150|gb|EGJ50194.1| response regulator receiver protein [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 1143

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 27/87 (31%), Gaps = 7/87 (8%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI-------TIESGPRCHDGTRRTVRY 96
              F      R       RCI C +C  +CP +         T  S             Y
Sbjct: 98  PGEFHAVARKRSGFVDPSRCIGCGICAEVCPVRVKDEFNAGLTERSAIHLPVPQAIPNHY 157

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPN 123
            +D+  C  C  C +ACP  A+     
Sbjct: 158 VVDLDNCQRCWQCHKACPTGAVDFKFE 184



 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 9/58 (15%)

Query: 60   EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
               C  C  C  +CP  A ++++            R  +D + C  CG C   CP  A
Sbjct: 1072 HTYCSLCGRCIDVCPYGARSMDTD---------HQRVVVDELLCQGCGACAAVCPNSA 1120



 Score = 35.1 bits (79), Expect = 3.2,   Method: Composition-based stats.
 Identities = 7/31 (22%), Positives = 12/31 (38%)

Query: 94   VRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
            +  ++    C  CG C + CP  A     + 
Sbjct: 1066 MVAEVRHTYCSLCGRCIDVCPYGARSMDTDH 1096


>gi|327313771|ref|YP_004329208.1| pyruvate synthase [Prevotella denticola F0289]
 gi|326945207|gb|AEA21092.1| pyruvate synthase [Prevotella denticola F0289]
          Length = 1191

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 35/123 (28%), Gaps = 21/123 (17%)

Query: 12  FLKEFVGAFFLCLRYFFK-----AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIAC 66
           F+KE V           K        T++  +  G+ +   RG  A        E CI C
Sbjct: 637 FVKELVRPMNAQAGDLLKVSDFVKHNTVDGTWSVGTAAYDKRGVAAFVPTW-DAENCIQC 695

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK---------------CIYCGLCQE 111
             C  +CP   I                  DI   K               C  CG C +
Sbjct: 696 NKCSFVCPHACIRPFVLDEQEKAGFNDTTLDILAPKQLKGMQFRIGVSVLDCTGCGNCAD 755

Query: 112 ACP 114
            CP
Sbjct: 756 VCP 758


>gi|323940294|gb|EGB36486.1| electron transporter [Escherichia coli E482]
          Length = 631

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLFWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|320120380|gb|ADW16133.1| hypothetical protein HMPREF0389_01687 [Filifactor alocis ATCC
           35896]
          Length = 1172

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 28/86 (32%), Gaps = 14/86 (16%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT---IESGPRCHDGTR-------- 91
           TS   +   A++      E C+ C  C  +CP   I    +        G +        
Sbjct: 664 TSQYEKRGIAVKVPCWNPENCVQCNQCSFVCPHAVIRPFLMTEEETKRYGAKGIPANGKG 723

Query: 92  ---RTVRYDIDMIKCIYCGLCQEACP 114
                 R  I  + C  CG C + CP
Sbjct: 724 LEGYRYRIQISPLDCTGCGNCADVCP 749


>gi|317473756|ref|ZP_07933037.1| ferredoxin oxidoreductase [Bacteroides eggerthii 1_2_48FAA]
 gi|316910013|gb|EFV31686.1| ferredoxin oxidoreductase [Bacteroides eggerthii 1_2_48FAA]
          Length = 1185

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 32/90 (35%), Gaps = 15/90 (16%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGP 84
           E+G+     RG  A     N  E CI C  C  +CP                A   +   
Sbjct: 667 EQGTAKYEKRGVAAFVPEWN-PENCIQCNKCAYVCPHASIRPFVLDAEEQKGAEFAQLKA 725

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                   T R  +D++ C+ CG C + CP
Sbjct: 726 VGKAFDGMTFRMQVDVLDCLGCGNCADICP 755


>gi|312136853|ref|YP_004004190.1| 4fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermus fervidus DSM 2088]
 gi|311224572|gb|ADP77428.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermus fervidus DSM 2088]
          Length = 123

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 37/110 (33%), Gaps = 7/110 (6%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
            +       +       T+        T   + G   L       E+C  C +C  +CP 
Sbjct: 4   ILRIVKEAAKNLGSKVFTLIPKDMDEITKRYWLGRPTLI-----PEKCNGCSICAIMCPV 58

Query: 76  QAITIESGPRCHDGTRRT--VRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +AI +        G R+        D  +CIYCGLC E C   AI     
Sbjct: 59  KAINMVVVGERVVGKRKVPLKNPKFDYNRCIYCGLCSEVCKFGAIKIKKE 108


>gi|331673198|ref|ZP_08373966.1| electron transport complex protein RnfC [Escherichia coli TA280]
 gi|331069396|gb|EGI40783.1| electron transport complex protein RnfC [Escherichia coli TA280]
          Length = 608

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|300927478|ref|ZP_07143191.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 182-1]
 gi|300416582|gb|EFJ99892.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 182-1]
          Length = 575

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|298675342|ref|YP_003727092.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Methanohalobium evestigatum Z-7303]
 gi|298288330|gb|ADI74296.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanohalobium evestigatum Z-7303]
          Length = 447

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 34/87 (39%), Gaps = 4/87 (4%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           EK  +         L    +    C  C LC+ ICP  AI    G +  +         I
Sbjct: 192 EKEPSPTDPSPFEQLMVDEDE---CDYCMLCQDICPEDAIK-VKGKKPCEPPAIEGEVHI 247

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFE 125
           D  KC  CG C+E CP DA+     FE
Sbjct: 248 DEDKCTRCGWCREVCPYDAVEIKKPFE 274



 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 1/74 (1%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               +RC  C LC  ICP QA+ +        G        +D+ KC +CG+C + CPV+
Sbjct: 43  DYDYKRCTGCGLCVKICPTQALELGPMHEIATGMDAPPV-TLDIEKCTFCGMCAKFCPVN 101

Query: 117 AIVEGPNFEFATET 130
           A     + E  +E 
Sbjct: 102 AFKMEISGEVPSED 115



 Score = 42.4 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 28/81 (34%), Gaps = 10/81 (12%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P++       F GE  L+           C+ C  +CPA    +               
Sbjct: 262 CPYDAVEIKKPFEGEITLKENNIKRCDPHGCQACFNVCPAHLWYVPEDKNIA-------- 313

Query: 96  YDIDMIKCIYCGLCQEACPVD 116
             I    CIYCG C+ ACP +
Sbjct: 314 --IKEDYCIYCGACENACPEN 332



 Score = 42.4 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIE--SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
             E+C  C +C   CP  A  +E        D       Y      C+ C LC+ +CP D
Sbjct: 84  DIEKCTFCGMCAKFCPVNAFKMEISGEVPSEDSYPEFDSYVKINNNCLPCLLCESSCPED 143

Query: 117 AI 118
           AI
Sbjct: 144 AI 145



 Score = 40.9 bits (94), Expect = 0.069,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E+C  C LC   C   A  +              +  +D  +C YC LCQ+ CP DAI
Sbjct: 171 DTEKCNLCGLCSHFC--DAFIMLEKEPSPTDPSPFEQLMVDEDECDYCMLCQDICPEDAI 228


>gi|293374451|ref|ZP_06620774.1| sulfite reductase, subunit C [Turicibacter sanguinis PC909]
 gi|292646937|gb|EFF64924.1| sulfite reductase, subunit C [Turicibacter sanguinis PC909]
          Length = 321

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 27/83 (32%), Gaps = 8/83 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +      +  G   +      ++RCI+C  C   C  +A    S         R   
Sbjct: 145 CPNDCIKARMQDFGIIGMTMPQYDKDRCISCGACVRACKKKATGALSAENFKVLRDR--- 201

Query: 96  YDIDMIKCIYCGLCQEACPVDAI 118
                 KCI CG C   CP  A 
Sbjct: 202 -----SKCIGCGECVIQCPTAAW 219


>gi|270297045|ref|ZP_06203244.1| NADH:ubiquinone oxidoreductase [Bacteroides sp. D20]
 gi|270273032|gb|EFA18895.1| NADH:ubiquinone oxidoreductase [Bacteroides sp. D20]
          Length = 635

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/71 (33%), Positives = 29/71 (40%), Gaps = 10/71 (14%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R   +L  Y    E CI C LC   CPA AI  +              + I+  KCI CG
Sbjct: 572 RQCKSLLTYTINPELCIGCHLCFKHCPADAILGD----------VRKPHVINPDKCIKCG 621

Query: 108 LCQEACPVDAI 118
           +C   C   AI
Sbjct: 622 MCMARCKFKAI 632



 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 8/70 (11%)

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
                    +          +  + Y I+   CI C LC + CP DAI+         + 
Sbjct: 555 NFYDEYVKHVREKTCRARQCKSLLTYTINPELCIGCHLCFKHCPADAIL--------GDV 606

Query: 131 RQELYYDKER 140
           R+    + ++
Sbjct: 607 RKPHVINPDK 616


>gi|257094088|ref|YP_003167729.1| putative glutamate synthase (NADPH) small subunit [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257046612|gb|ACV35800.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 540

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 9/59 (15%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            C  C  C  +CP  A+                R+  +   C  CG+C   CP  AI  
Sbjct: 486 NCFECDNCYGVCPDNAVIKLGPGN---------RFQFNYDYCKGCGMCVAECPCGAIKM 535


>gi|213582925|ref|ZP_03364751.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 456

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 31/102 (30%), Gaps = 14/102 (13%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +        +  CI CG C   CP  
Sbjct: 259 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 315

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158
                 N       RQ      E+   N  R E +       
Sbjct: 316 -----SNIPLVQYFRQ------EKAEINAIRLEEKRAAEAKA 346


>gi|170755927|ref|YP_001780817.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum B1 str.
           Okra]
 gi|169121139|gb|ACA44975.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum B1 str.
           Okra]
          Length = 1172

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 43/126 (34%), Gaps = 24/126 (19%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA---QAITIESGPRCHDGTRRTV--- 94
           G+TS   RG   +       ++CI C  C  ICP    +A  +    +    +       
Sbjct: 668 GTTSYEKRGIAVMIPEWQ-IDKCIQCNQCSYICPHSVIRAYLLNKDEKEKSPSAFETKKA 726

Query: 95  ----------RYDIDMIKCIYCGLCQEACPVD--AIVEGP---NFEFATETRQ--ELYYD 137
                     R  I  + C  CG C + CP    A++        E  +E  +       
Sbjct: 727 TGKGLEELGYRIQISPLDCTGCGNCADVCPAPGKALIMKNAEEQIEMQSENWEFGLNITT 786

Query: 138 KERLLN 143
           KE L++
Sbjct: 787 KENLMD 792


>gi|167757520|ref|ZP_02429647.1| hypothetical protein CLORAM_03070 [Clostridium ramosum DSM 1402]
 gi|167702517|gb|EDS17096.1| hypothetical protein CLORAM_03070 [Clostridium ramosum DSM 1402]
          Length = 371

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 11/60 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +++CI C  C  IC     +I                 ID  KC+ CG C   CP DAI
Sbjct: 195 EQDKCIGCGQCIKICAHNGTSITDHKAS-----------IDHDKCVGCGRCIGVCPKDAI 243


>gi|158319965|ref|YP_001512472.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
 gi|158140164|gb|ABW18476.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
          Length = 635

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 15/99 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            L+Y FK +   +   ++           +   Y     +C+ C +C  +CP  AI    
Sbjct: 546 TLKY-FKHEYEAHVREDRCPAGVC----KSFMTYTIFPSKCVGCGVCARVCPVHAIRGVV 600

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
                        Y ID   CI CG C + C  +AI + 
Sbjct: 601 KKP----------YHIDQATCIKCGACMDQCRFEAIEKT 629


>gi|327401004|ref|YP_004341843.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
 gi|327316512|gb|AEA47128.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
          Length = 254

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 14/83 (16%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P E       F G   +         C  C +C  ICP+ AI+++           +  
Sbjct: 152 CPEEAIYVEKPFSGSVIVNDD-----ACQGCGVCCEICPSMAISLQD---------PSKS 197

Query: 96  YDIDMIKCIYCGLCQEACPVDAI 118
            +ID  +CIYCG C  ACP +AI
Sbjct: 198 VEIDEDRCIYCGACSNACPTNAI 220



 Score = 40.9 bits (94), Expect = 0.064,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 8/75 (10%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R    L      +E CI C  C   CP +AI +E           +    ++   C  CG
Sbjct: 127 RNAIMLGGRMRDDELCIYCGACSKACPEEAIYVEK--------PFSGSVIVNDDACQGCG 178

Query: 108 LCQEACPVDAIVEGP 122
           +C E CP  AI    
Sbjct: 179 VCCEICPSMAISLQD 193



 Score = 39.3 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 3/77 (3%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                R     R      +RC+ C+LC   CP  AI +        G    V   ID   
Sbjct: 15  LYKIIREGVGKRVLVYNVQRCVGCELCSTACPKNAIKLNPPASVKLGYPPVV---IDAET 71

Query: 103 CIYCGLCQEACPVDAIV 119
           CI CG+C E C ++AI 
Sbjct: 72  CILCGICSEVCLLNAIN 88



 Score = 37.8 bits (86), Expect = 0.51,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 3/89 (3%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH--DGTRRT 93
            P      +P    +          E CI C +C  +C   AI + +G +       +  
Sbjct: 45  CPKNAIKLNPPASVKLGYPPVVIDAETCILCGICSEVCLLNAINVYAGDKPTRLYSPKYR 104

Query: 94  VRYDIDMIKC-IYCGLCQEACPVDAIVEG 121
             +  D+ KC   C +C+++CP +AI+ G
Sbjct: 105 AIFLADLNKCPPQCTVCKDSCPRNAIMLG 133



 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 13/60 (21%)

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
            C +C+  CP  AI +    R                 CIYCG C +ACP +AI     F
Sbjct: 117 QCTVCKDSCPRNAIMLGGRMRDD-------------ELCIYCGACSKACPEEAIYVEKPF 163


>gi|325860047|ref|ZP_08173174.1| pyruvate synthase [Prevotella denticola CRIS 18C-A]
 gi|325482573|gb|EGC85579.1| pyruvate synthase [Prevotella denticola CRIS 18C-A]
          Length = 1191

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 35/123 (28%), Gaps = 21/123 (17%)

Query: 12  FLKEFVGAFFLCLRYFFK-----AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIAC 66
           F+KE V           K        T++  +  G+ +   RG  A        E CI C
Sbjct: 637 FVKELVRPMNAQAGDLLKVSDFVKHNTVDGTWSVGTAAYDKRGVAAFVPTW-DAENCIQC 695

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK---------------CIYCGLCQE 111
             C  +CP   I                  DI   K               C  CG C +
Sbjct: 696 NKCSFVCPHACIRPFVLDEQEKAGFNDTTLDILAPKQLKGMQFRIGVSVLDCTGCGNCAD 755

Query: 112 ACP 114
            CP
Sbjct: 756 VCP 758


>gi|302391154|ref|YP_003826974.1| Na-translocating NADH-quinone reductase subunit A [Acetohalobium
           arabaticum DSM 5501]
 gi|302203231|gb|ADL11909.1| Na-translocating NADH-quinone reductase subunit A [Acetohalobium
           arabaticum DSM 5501]
          Length = 472

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 18/58 (31%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
              E  CI C  CE  CP   I           +         +  CI C LC   CP
Sbjct: 391 HGEERACIFCGYCEDACPVDIIPHLVERYTAQSSVDEELIRYGIFDCIECNLCTFVCP 448



 Score = 38.5 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 11/18 (61%), Positives = 14/18 (77%)

Query: 103 CIYCGLCQEACPVDAIVE 120
           CI+CG C++ACPVD I  
Sbjct: 397 CIFCGYCEDACPVDIIPH 414


>gi|257064958|ref|YP_003144630.1| NADH:ubiquinone oxidoreductase chain I-like protein [Slackia
           heliotrinireducens DSM 20476]
 gi|256792611|gb|ACV23281.1| NADH:ubiquinone oxidoreductase chain I-like protein [Slackia
           heliotrinireducens DSM 20476]
          Length = 395

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 6/65 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + CI+C++C   CP  AI          G       D     C+ C  C++ CP +A+
Sbjct: 292 DPDTCISCRMCATFCPTGAIQKFDDEDGTIGI------DHYPGDCVRCRCCEDICPSNAL 345

Query: 119 VEGPN 123
                
Sbjct: 346 TLYDE 350



 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 11/53 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C   C + AI+I++               I   +CI CG C   CP  A+
Sbjct: 36  CMRCADACTSGAISIQNNELV-----------ISPERCIGCGTCATVCPTCAL 77



 Score = 33.9 bits (76), Expect = 6.9,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 12/29 (41%)

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           R      ID   CI C +C   CP  AI 
Sbjct: 284 RLWGHVVIDPDTCISCRMCATFCPTGAIQ 312


>gi|323698184|ref|ZP_08110096.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfovibrio sp. ND132]
 gi|323458116|gb|EGB13981.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfovibrio desulfuricans ND132]
          Length = 776

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 6/60 (10%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C  C +C+ +CP  AI     P             +D  KCI CG C +ACP        
Sbjct: 718 CRDCYICDTLCPQNAIKRNELPDGGFER------VVDPDKCIACGFCADACPCGIWDMKN 771


>gi|320354225|ref|YP_004195564.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Desulfobulbus propionicus DSM 2032]
 gi|320122727|gb|ADW18273.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Desulfobulbus propionicus DSM 2032]
          Length = 617

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/40 (42%), Positives = 20/40 (50%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            IE         R  +R+DID  +C  CG C  ACPV AI
Sbjct: 545 HIEDHKCPAGACRALIRFDIDPARCTGCGACLRACPVAAI 584



 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 10/67 (14%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           AL R+     RC  C  C   CP  AI+ E                ID   CI CG C++
Sbjct: 558 ALIRFDIDPARCTGCGACLRACPVAAISGEKKQPHA----------IDQQLCIQCGSCRQ 607

Query: 112 ACPVDAI 118
           AC  +A+
Sbjct: 608 ACKFEAV 614


>gi|304315261|ref|YP_003850408.1| F420-non-reducing hydrogenase, subunit B, polyferredoxin
           [Methanothermobacter marburgensis str. Marburg]
 gi|313104135|sp|P60232|MVHB_METTM RecName: Full=Polyferredoxin protein mvhB
 gi|302588720|gb|ADL59095.1| F420-non-reducing hydrogenase, subunit B, polyferredoxin
           [Methanothermobacter marburgensis str. Marburg]
          Length = 412

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ CI C +C   CP  A+   SG +     +   ++++D   CI C  C EACP D I
Sbjct: 173 DEDTCIKCGVCAQTCPWNAVY-ISGKKPEKRAKEIRKFELDEEACIGCNTCVEACPGDFI 231



 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 1/65 (1%)

Query: 60  EERCIACKLCEAICPAQAIT-IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              C  C  C   CP  A++ ++          +  R   +   C  CG C EACP D +
Sbjct: 322 FAMCTRCGACTMACPKGALSLVDMDKVIDGEVVKRKRVQYNPALCDQCGDCIEACPYDML 381

Query: 119 VEGPN 123
                
Sbjct: 382 KLTDE 386



 Score = 42.4 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 1/61 (1%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           +  C+ C+ C  ICP   I +E                I +  C+ CG+C   CPVDAI 
Sbjct: 104 QGFCVMCQKCVDICPVGVIGVEGIKEPAKVELEIEGP-IFIADCVGCGMCVPECPVDAIT 162

Query: 120 E 120
            
Sbjct: 163 L 163



 Score = 41.2 bits (95), Expect = 0.047,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 9/60 (15%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C+ C +C   CP  AIT+E         +     +ID   CI CG+C + CP +A+   
Sbjct: 145 DCVGCGMCVPECPVDAITLE---------KVGGVIEIDEDTCIKCGVCAQTCPWNAVYIS 195



 Score = 37.4 bits (85), Expect = 0.68,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 22/65 (33%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
             E +C     C  ICP  AI + +           V  +     C  CG C  ACP  A
Sbjct: 280 WDEGKCDFIGACANICPNDAIRVVTREGMKLPDNEKVDEEPSFAMCTRCGACTMACPKGA 339

Query: 118 IVEGP 122
           +    
Sbjct: 340 LSLVD 344



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 23/66 (34%), Gaps = 4/66 (6%)

Query: 52  ALRRYPNGEERCIACK---LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           A+   P     C  C     C   CP  A+ IE       G     R   +  KC  CG 
Sbjct: 23  AIEVTPEDVIYCDICGGEPKCVDACPTGALKIEDLVVDEAGNT-QGRIVFNPDKCNECGD 81

Query: 109 CQEACP 114
           C E CP
Sbjct: 82  CVEVCP 87



 Score = 35.1 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 17/64 (26%), Gaps = 12/64 (18%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
                 C  C  C   CP   + +        G             CI C  C  ACP  
Sbjct: 360 QYNPALCDQCGDCIEACPYDMLKLTDEKVPLKGF------------CILCDQCIPACPKG 407

Query: 117 AIVE 120
           A+  
Sbjct: 408 ALSL 411



 Score = 34.7 bits (78), Expect = 4.2,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 11/23 (47%)

Query: 101 IKCIYCGLCQEACPVDAIVEGPN 123
             CI CG CQ  CP  AI   P 
Sbjct: 7   EDCIRCGACQGTCPTAAIEVTPE 29



 Score = 34.3 bits (77), Expect = 5.1,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 9/70 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++C  C  C  +CP Q + ++ G                   C+ C  C + CPV  I
Sbjct: 72  NPDKCNECGDCVEVCPPQILKLDEGKVKKIPL---------QGFCVMCQKCVDICPVGVI 122

Query: 119 VEGPNFEFAT 128
                 E A 
Sbjct: 123 GVEGIKEPAK 132


>gi|301309723|ref|ZP_07215662.1| putative 4Fe-4S binding domain protein [Bacteroides sp. 20_3]
 gi|300831297|gb|EFK61928.1| putative 4Fe-4S binding domain protein [Bacteroides sp. 20_3]
          Length = 286

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 27/77 (35%), Gaps = 11/77 (14%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                 +E CI C  C  +CP+   T E         R           CI CG C + C
Sbjct: 1   MTLNIDQESCIKCGKCVRVCPSDIFTQERAGETIGLVRV--------ESCIVCGHCVDVC 52

Query: 114 PVDAIVEGPNFEFATET 130
           P  +++     EF  E 
Sbjct: 53  PTGSVLHS---EFPPEK 66


>gi|300990137|ref|ZP_07179144.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 200-1]
 gi|300305772|gb|EFJ60292.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 200-1]
          Length = 571

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|224535656|ref|ZP_03676195.1| hypothetical protein BACCELL_00520 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522729|gb|EEF91834.1| hypothetical protein BACCELL_00520 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 635

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 28/69 (40%), Gaps = 10/69 (14%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            AL  Y    E CI C LC   CPA AI  +              + I+  KCI CG+C 
Sbjct: 575 KALLTYTINPELCIGCHLCFKHCPADAILGD----------VRKPHVINPDKCIKCGMCM 624

Query: 111 EACPVDAIV 119
             C   AI 
Sbjct: 625 ARCKFKAIN 633



 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 8/62 (12%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
            +          +  + Y I+   CI C LC + CP DAI+         + R+    + 
Sbjct: 563 HVRDKTCRAKQCKALLTYTINPELCIGCHLCFKHCPADAIL--------GDVRKPHVINP 614

Query: 139 ER 140
           ++
Sbjct: 615 DK 616


>gi|197301314|ref|ZP_03166399.1| hypothetical protein RUMLAC_00045 [Ruminococcus lactaris ATCC
           29176]
 gi|197299632|gb|EDY34147.1| hypothetical protein RUMLAC_00045 [Ruminococcus lactaris ATCC
           29176]
          Length = 628

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 29/69 (42%), Gaps = 10/69 (14%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           ALR++    ERC  C  C   CP  AI+           +    + ID  KCI CG C  
Sbjct: 568 ALRKFIISPERCKGCSKCARNCPVGAISG----------KIKEPFTIDTEKCIKCGACAS 617

Query: 112 ACPVDAIVE 120
           AC   AI  
Sbjct: 618 ACAFGAIHI 626



 Score = 37.0 bits (84), Expect = 0.85,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 13/40 (32%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +              ++ I   +C  C  C   CPV AI
Sbjct: 555 HVVEKKCASHTCTALRKFIISPERCKGCSKCARNCPVGAI 594


>gi|152970518|ref|YP_001335627.1| electron transport complex protein RnfC [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|150955367|gb|ABR77397.1| electron transport complex protein RnfC [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
          Length = 715

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 40/112 (35%), Gaps = 13/112 (11%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEKGCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHNLADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            I     F     E A   ++E     +R      R+E+   R +  +   R
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEE-----QRAAEAKARFEARQAR-LEREKAAR 474


>gi|116695848|ref|YP_841424.1| benzoyl-CoA dioxygenase A [Ralstonia eutropha H16]
 gi|113530347|emb|CAJ96694.1| Benzoyl-CoA dioxygenase A [Ralstonia eutropha H16]
          Length = 426

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 11/68 (16%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             ++++    E CI C  CEA CP  AIT +S             Y +D  KC  C  C 
Sbjct: 7   QVIKQHLIDPEICIRCNTCEATCPVGAITHDS-----------RNYVVDADKCNLCMACI 55

Query: 111 EACPVDAI 118
             CP  +I
Sbjct: 56  SPCPTGSI 63



 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 12/23 (52%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVE 120
           ID   CI C  C+  CPV AI  
Sbjct: 14  IDPEICIRCNTCEATCPVGAITH 36


>gi|94968337|ref|YP_590385.1| NADH-quinone oxidoreductase, chain G [Candidatus Koribacter
           versatilis Ellin345]
 gi|94550387|gb|ABF40311.1| NADH-quinone oxidoreductase, chain G [Candidatus Koribacter
           versatilis Ellin345]
          Length = 788

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 25/63 (39%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              RCI C  C  +C         G +    +      + D + C  CG+C + CPV A+
Sbjct: 144 DRPRCILCYRCVRVCGEGMDVWALGVQNRGASSVIAPNEGDHLNCEECGMCIDICPVGAL 203

Query: 119 VEG 121
             G
Sbjct: 204 TSG 206


>gi|330817875|ref|YP_004361580.1| Iron-sulfur cluster-binding protein [Burkholderia gladioli BSR3]
 gi|327370268|gb|AEA61624.1| Iron-sulfur cluster-binding protein [Burkholderia gladioli BSR3]
          Length = 308

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 23/64 (35%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ CI C LC   CP  AI                 + +    C  C LC   CPVD I
Sbjct: 83  DEQLCIGCTLCIQACPVDAIVGAPKQ----------MHTVVAELCTGCDLCVAPCPVDCI 132

Query: 119 VEGP 122
              P
Sbjct: 133 AMIP 136



 Score = 37.4 bits (85), Expect = 0.69,   Method: Composition-based stats.
 Identities = 14/21 (66%), Positives = 15/21 (71%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C LC +ACPVDAI
Sbjct: 82  IDEQLCIGCTLCIQACPVDAI 102


>gi|291278971|ref|YP_003495806.1| pyruvate:ferredoxin oxidoreductase [Deferribacter desulfuricans
           SSM1]
 gi|290753673|dbj|BAI80050.1| pyruvate:ferredoxin oxidoreductase [Deferribacter desulfuricans
           SSM1]
          Length = 1189

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 29/108 (26%), Gaps = 24/108 (22%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPR 85
              TS   +   AL       E CI C +C  +CP                A        
Sbjct: 675 PTGTSKYEKRNIALNVPEWDPEVCIQCGICSFVCPHATIRMKVYDPKYLENAPETFKAVD 734

Query: 86  CHDGTRRTVRYDIDM--IKCIYCGLCQEACP--------VDAIVEGPN 123
                   +++ I +    C  CG C   CP          AI   P 
Sbjct: 735 AKGKEFAGMKFTIQVSVEDCTGCGACVYNCPAKSKTDPTKKAINMVPQ 782



 Score = 38.5 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 13/58 (22%)

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIV 157
              CI CG+C   CP   I                 YD + L N  + +++   +   
Sbjct: 695 PEVCIQCGICSFVCPHATIRMK-------------VYDPKYLENAPETFKAVDAKGKE 739


>gi|254786926|ref|YP_003074355.1| electron transport complex protein RnfC [Teredinibacter turnerae
           T7901]
 gi|237686186|gb|ACR13450.1| electron transport complex, RnfABCDGE type, C subunit
           [Teredinibacter turnerae T7901]
          Length = 747

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 2/94 (2%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C +C   CPA  +  +               + ++  CI CG C   CP  +I  
Sbjct: 370 QACIRCGMCAQACPAS-LLPQQMFWYAQSEDFDKLKEHNLFDCIECGACSYVCP-SSIPL 427

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVR 154
              +  +    + L  +KE+   +  R+E+   R
Sbjct: 428 VQYYRASKGEIRRLDKEKEKSDRSRLRFEARKER 461


>gi|254481239|ref|ZP_05094484.1| electron transport complex, RnfABCDGE type, B subunit subfamily
           [marine gamma proteobacterium HTCC2148]
 gi|214038402|gb|EEB79064.1| electron transport complex, RnfABCDGE type, B subunit subfamily
           [marine gamma proteobacterium HTCC2148]
          Length = 203

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 29/87 (33%), Gaps = 10/87 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E  +       E   +     E+ CI C  C   CP  AI          G  + +   I
Sbjct: 97  EAIALDEEHGEESVTQVAYIREDECIGCTKCIQACPVDAI---------LGAAKHMHTVI 147

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFE 125
               C  C LC E CPVD I      E
Sbjct: 148 VSE-CTGCDLCVEPCPVDCIDMISEKE 173


>gi|239618433|ref|YP_002941755.1| dihydroorotate dehydrogenase family protein [Kosmotoga olearia TBF
           19.5.1]
 gi|239507264|gb|ACR80751.1| dihydroorotate dehydrogenase family protein [Kosmotoga olearia TBF
           19.5.1]
          Length = 361

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 12/68 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
           +  R       +C+ C +C  +CP  A+++E                     C  CGLCQ
Sbjct: 301 YEKRTPKIDHSKCVKCGVCVEVCPYFALSMEEQVIVD------------EEACFGCGLCQ 348

Query: 111 EACPVDAI 118
             CP  AI
Sbjct: 349 TKCPTKAI 356



 Score = 42.4 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVE 120
           ID  KC+ CG+C E CP  A+  
Sbjct: 308 IDHSKCVKCGVCVEVCPYFALSM 330


>gi|187780196|ref|ZP_02996669.1| hypothetical protein CLOSPO_03792 [Clostridium sporogenes ATCC
           15579]
 gi|187773821|gb|EDU37623.1| hypothetical protein CLOSPO_03792 [Clostridium sporogenes ATCC
           15579]
          Length = 1172

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 43/126 (34%), Gaps = 24/126 (19%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA---QAITIESGPRCHDGTRRTV--- 94
           G+TS   RG   +       ++CI C  C  ICP    +A  ++   +            
Sbjct: 668 GTTSYEKRGIAVMIPEWQ-IDKCIQCNQCSYICPHSVIRAYLLDKDEKEKAPDTFETKKA 726

Query: 95  ----------RYDIDMIKCIYCGLCQEACPVD--AIVEGP---NFEFATETRQ--ELYYD 137
                     R  I  + C  CG C + CP    A++        E  +E  +       
Sbjct: 727 AGKGLEDLEYRIQISSLDCTGCGNCADVCPAPGKALIMKNAEEQIEMQSENWEFGLNITT 786

Query: 138 KERLLN 143
           KE L++
Sbjct: 787 KENLMD 792


>gi|188584958|ref|YP_001916503.1| protein of unknown function DUF362 [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179349645|gb|ACB83915.1| protein of unknown function DUF362 [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 398

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 26/93 (27%), Gaps = 6/93 (6%)

Query: 28  FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH 87
           F+   T          +     +            C  C +C+  CP  AI  +      
Sbjct: 292 FQLPDTRFVEMVPSWLTRAVINQLR-TVPQIDSNSCAHCGICQKSCPVDAIKTQRSTNGD 350

Query: 88  DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
                   Y I    CI C  C E CP  A+  
Sbjct: 351 KNL-----YTITPDNCIECYCCHELCPEKAVNI 378


>gi|73749283|ref|YP_308522.1| putative reductive dehalogenase [Dehalococcoides sp. CBDB1]
 gi|289433245|ref|YP_003463118.1| reductive dehalogenase [Dehalococcoides sp. GT]
 gi|73660999|emb|CAI83606.1| putative reductive dehalogenase [Dehalococcoides sp. CBDB1]
 gi|288946965|gb|ADC74662.1| reductive dehalogenase [Dehalococcoides sp. GT]
          Length = 491

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 3/74 (4%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIE---SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
              G + C  C +C   CP  AI+ +               + +  DM  C +C +CQ  
Sbjct: 372 DFGGRKFCETCGICADACPMGAISKDEPTWDAAKPYQYGGYLTWRTDMAVCSHCPVCQGT 431

Query: 113 CPVDAIVEGPNFEF 126
           CP +A  +    E 
Sbjct: 432 CPFNAFDKSGVHEL 445


>gi|333007309|gb|EGK26791.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Shigella flexneri
           K-272]
          Length = 1159

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 32/138 (23%), Gaps = 24/138 (17%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 631 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 684

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPVDA 117
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 685 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQMAPEDCTGCNLCVEVCPAKD 744

Query: 118 IVEGPNFEFATETRQELY 135
                       +RQE  
Sbjct: 745 RQNPEIKAINMMSRQEHV 762


>gi|332796725|ref|YP_004458225.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Acidianus hospitalis W1]
 gi|332694460|gb|AEE93927.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidianus
           hospitalis W1]
          Length = 104

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 25/84 (29%), Gaps = 2/84 (2%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
             G   P               + CIA   C   CP         P      ++     I
Sbjct: 22  VYGPVDPPKVLGIHGTIVGVDFDLCIADGSCITACPVNVFQWYDTPGHPASEKKADP--I 79

Query: 99  DMIKCIYCGLCQEACPVDAIVEGP 122
           +   CI+C  C   CPV AI   P
Sbjct: 80  NEQACIFCMACVNVCPVAAIDVKP 103


>gi|331015678|gb|EGH95734.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 291

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 10/74 (13%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           RGE   +     E  CI C  C   CP  AI   +           + + + + +C  C 
Sbjct: 76  RGEAPAQVAFIREAECIGCTKCIQACPVDAILGAAK----------LMHTVIIDECTGCD 125

Query: 108 LCQEACPVDAIVEG 121
           LC   CPVD I   
Sbjct: 126 LCVAPCPVDCIEMH 139


>gi|325497960|gb|EGC95819.1| dihydropyrimidine dehydrogenase [Escherichia fergusonii ECD227]
          Length = 411

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +       ++C+ C  C   C         G +  +   +T     +  K
Sbjct: 324 VPAEDLDRSYIVYPHINLDKCVGCGRCYISCYDG------GHQAMEWNEKTRTPHCNTEK 377

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 378 CVGCLLCGHVCPVGCIDLG 396


>gi|322832791|ref|YP_004212818.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Rahnella sp. Y9602]
 gi|321167992|gb|ADW73691.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Rahnella sp. Y9602]
          Length = 1176

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 33/144 (22%), Gaps = 32/144 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P     T  +   +   A        + C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSAFPPDGTWPTGTTQWEKRNIAEEVPIWKPDLCTQCNHCVAAC 699

Query: 74  --------------PAQAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPV-- 115
                          A A +            R  +Y   +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVQPEFMADAPSALQSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETRQE 133
                  AI      E   E R  
Sbjct: 760 RQDPSIKAINMADRIEHLEEERAN 783


>gi|317484987|ref|ZP_07943870.1| CobQ/CobB/MinD/ParA nucleotide binding domain-containing protein
           [Bilophila wadsworthia 3_1_6]
 gi|316923725|gb|EFV44928.1| CobQ/CobB/MinD/ParA nucleotide binding domain-containing protein
           [Bilophila wadsworthia 3_1_6]
          Length = 294

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 11/60 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + C  C +C   C   A+  +              Y ID ++C  CG+C   CP  AI
Sbjct: 64  DRDACRRCGICFEHCRFDAVKKDGD-----------VYGIDPLRCEGCGVCVALCPAKAI 112


>gi|300988844|ref|ZP_07178839.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 45-1]
 gi|300407382|gb|EFJ90920.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 45-1]
          Length = 570

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPADLLPQQLY-WFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|300907218|ref|ZP_07124880.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 84-1]
 gi|300401022|gb|EFJ84560.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 84-1]
          Length = 573

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|298380776|ref|ZP_06990375.1| electron transport complex protein RnfC [Escherichia coli FVEC1302]
 gi|298278218|gb|EFI19732.1| electron transport complex protein RnfC [Escherichia coli FVEC1302]
          Length = 588

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|256018178|ref|ZP_05432043.1| electron transport complex protein RnfC [Shigella sp. D9]
 gi|332279226|ref|ZP_08391639.1| electron transport complex protein rnfC [Shigella sp. D9]
 gi|332101578|gb|EGJ04924.1| electron transport complex protein rnfC [Shigella sp. D9]
          Length = 565

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|253682712|ref|ZP_04863509.1| ferredoxin [Clostridium botulinum D str. 1873]
 gi|253562424|gb|EES91876.1| ferredoxin [Clostridium botulinum D str. 1873]
          Length = 288

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEAC 113
            +++C+AC  C + CP   I +    +          R     +I    CI CGLC +AC
Sbjct: 167 NKDKCVACGACVSTCPKGVIDLVPQKQLVFVSCNSHDRGLDVKNICSTGCIGCGLCAKAC 226

Query: 114 PVDAIVEGPNFEFATETR 131
           P +AI    N      ++
Sbjct: 227 PKEAITMENNLPVIDYSK 244



 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 11/67 (16%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L         CI C LC   CP +AIT+E+               ID  KC+ CGLC   
Sbjct: 206 LDVKNICSTGCIGCGLCAKACPKEAITMENNLPV-----------IDYSKCVNCGLCAMK 254

Query: 113 CPVDAIV 119
           CP  AI 
Sbjct: 255 CPTKAIQ 261


>gi|254488903|ref|ZP_05102108.1| iron-sulfur cluster-binding protein [Roseobacter sp. GAI101]
 gi|214045772|gb|EEB86410.1| iron-sulfur cluster-binding protein [Roseobacter sp. GAI101]
          Length = 650

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 9/82 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + C  C  C ++CP+ A+                +       C+ CGLC   CP  AI
Sbjct: 498 DTDACTLCLSCVSLCPSGALGDNPD---------LPQLRFQEDACLQCGLCANICPEQAI 548

Query: 119 VEGPNFEFATETRQELYYDKER 140
              P          ++   +E 
Sbjct: 549 TLKPQMNLTDAAFTQVVLHEEE 570



 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 11/53 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C  +CP  AIT                  ID + C  CG C   CP  AI
Sbjct: 279 CSNCLDLCPTGAITSAGE-----------HVAIDPLICAGCGSCSAVCPSGAI 320


>gi|170754983|ref|YP_001781396.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum B1 str. Okra]
 gi|169120195|gb|ACA44031.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum B1 str. Okra]
          Length = 631

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 10/63 (15%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           +    ++CI C  C   CP   I            +   ++ I+  KCI CG C  ACPV
Sbjct: 576 HYEITDKCIGCTKCARGCPVSCIIG----------KVKEKHFINQEKCIKCGNCYSACPV 625

Query: 116 DAI 118
            AI
Sbjct: 626 GAI 628



 Score = 37.8 bits (86), Expect = 0.58,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 17/39 (43%)

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +  RC  GT + + +     KCI C  C   CPV  I
Sbjct: 560 HVNEKRCPSGTCKNLLHYEITDKCIGCTKCARGCPVSCI 598


>gi|28871290|ref|NP_793909.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213970874|ref|ZP_03398997.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           tomato T1]
 gi|301383775|ref|ZP_07232193.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           tomato Max13]
 gi|302059917|ref|ZP_07251458.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           tomato K40]
 gi|302130516|ref|ZP_07256506.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           tomato NCPPB 1108]
 gi|28854540|gb|AAO57604.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           tomato str. DC3000]
 gi|213924397|gb|EEB57969.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           tomato T1]
          Length = 291

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 10/74 (13%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           RGE   +     E  CI C  C   CP  AI   +           + + + + +C  C 
Sbjct: 76  RGEAPAQVAFIREAECIGCTKCIQACPVDAILGAAK----------LMHTVIIDECTGCD 125

Query: 108 LCQEACPVDAIVEG 121
           LC   CPVD I   
Sbjct: 126 LCVAPCPVDCIEMH 139


>gi|83950408|ref|ZP_00959141.1| iron-sulfur cluster-binding protein [Roseovarius nubinhibens ISM]
 gi|83838307|gb|EAP77603.1| iron-sulfur cluster-binding protein [Roseovarius nubinhibens ISM]
          Length = 672

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 30/99 (30%), Gaps = 13/99 (13%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
                      L       + C  C  C ++CP+ A+                +      
Sbjct: 508 PLPEGAPYGAVLV----DTDACTLCLSCVSLCPSGALGDNPD---------LPQLRFQED 554

Query: 102 KCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140
            C+ CGLC   CP DAI   P  +       +   ++E 
Sbjct: 555 ACLQCGLCANICPEDAITYEPRLDLTDAALSQTVLNEEE 593



 Score = 42.0 bits (97), Expect = 0.030,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 11/55 (20%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             C  C  +CP  AIT +                ID + C  CG C  ACP  AI
Sbjct: 300 TGCTRCLDLCPTGAITPDGD-----------HVTIDPMVCAGCGACSAACPSGAI 343


>gi|125975026|ref|YP_001038936.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium
           thermocellum ATCC 27405]
 gi|256005088|ref|ZP_05430058.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium
           thermocellum DSM 2360]
 gi|281418557|ref|ZP_06249576.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium
           thermocellum JW20]
 gi|125715251|gb|ABN53743.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium
           thermocellum ATCC 27405]
 gi|255990939|gb|EEU01051.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium
           thermocellum DSM 2360]
 gi|281407641|gb|EFB37900.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium
           thermocellum JW20]
 gi|316939187|gb|ADU73221.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium
           thermocellum DSM 1313]
          Length = 290

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 9/70 (12%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G          +++CI C LC+A+CPA+ I ++   +      +          CIYCG 
Sbjct: 152 GVKGGMMPSWVKDKCIYCGLCQAVCPAKVIEVKKQEKELTFNEK---------DCIYCGK 202

Query: 109 CQEACPVDAI 118
           C + CP  A 
Sbjct: 203 CVKVCPTSAW 212



 Score = 39.3 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 21/64 (32%), Gaps = 3/64 (4%)

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           C    +  E       G            KCIYCGLCQ  CP   I      +  T   +
Sbjct: 139 CRNNCLKAEENDLGVKGGMMPSWVK---DKCIYCGLCQAVCPAKVIEVKKQEKELTFNEK 195

Query: 133 ELYY 136
           +  Y
Sbjct: 196 DCIY 199


>gi|328947025|ref|YP_004364362.1| Ferredoxin hydrogenase [Treponema succinifaciens DSM 2489]
 gi|328447349|gb|AEB13065.1| Ferredoxin hydrogenase [Treponema succinifaciens DSM 2489]
          Length = 492

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 27/72 (37%), Gaps = 6/72 (8%)

Query: 54  RRYPNGEERCIACKLCEAICPAQ------AITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           RR    E+ CI C  C   CP            E+ P             ID  KCI+CG
Sbjct: 139 RRATIDEKLCINCGKCMENCPYHSIIKIPVPCEEACPVGAISKDEKGHEKIDYHKCIFCG 198

Query: 108 LCQEACPVDAIV 119
            C   CP  A++
Sbjct: 199 NCMRECPFGAMM 210



 Score = 40.5 bits (93), Expect = 0.079,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 4/79 (5%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKC 103
           R +         +E C  C     +         + P   +  R+ +  D    ID   C
Sbjct: 89  REKPTWPMLTVLDEACNGCVKAHYMVTNACQGCYARPCMVNCPRKAITVDRRATIDEKLC 148

Query: 104 IYCGLCQEACPVDAIVEGP 122
           I CG C E CP  +I++ P
Sbjct: 149 INCGKCMENCPYHSIIKIP 167


>gi|315291967|gb|EFU51319.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 153-1]
          Length = 569

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|288957563|ref|YP_003447904.1| 4Fe-4S ferredoxin, iron-sulfur binding [Azospirillum sp. B510]
 gi|288909871|dbj|BAI71360.1| 4Fe-4S ferredoxin, iron-sulfur binding [Azospirillum sp. B510]
          Length = 688

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/120 (21%), Positives = 34/120 (28%), Gaps = 16/120 (13%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80
            L LR+  K       P E  +  P               E C  C  C   CP  A+  
Sbjct: 491 MLALRHLHK---VAPAPVEVLALPPGAPFGRV----AVDVEGCTLCLACVGACPTGALLD 543

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140
            +                    C+ CGLC+  CP   I   P  +F    R      +E 
Sbjct: 544 NADK---------PMLSFAQDACVQCGLCRTTCPEKVISLVPEIDFRDRARGASVIKEEE 594



 Score = 40.9 bits (94), Expect = 0.062,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 17/54 (31%), Gaps = 11/54 (20%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
             C  C  +CP  A+T                  ID   C  CG C   CP  A
Sbjct: 289 TGCTRCLDVCPTGAVTPNGD-----------HVAIDPHVCAGCGSCAAVCPTGA 331


>gi|268323353|emb|CBH36941.1| conserved hypothetical protein containing 4Fe-4S binding domain,
           NADH-quinone oxidoreductase chain F related [uncultured
           archaeon]
          Length = 658

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 10/62 (16%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L  +    ++C AC+LC   CP  AI  +          + V + ID   CI CG+C + 
Sbjct: 559 LISFYIDPDKCTACRLCMKNCPEGAIEGD----------KRVIHVIDQTLCIKCGICYDV 608

Query: 113 CP 114
           CP
Sbjct: 609 CP 610



 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 17/40 (42%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            I  G       +  + + ID  KC  C LC + CP  AI
Sbjct: 545 HIRDGRCPALVCKNLISFYIDPDKCTACRLCMKNCPEGAI 584


>gi|260892798|ref|YP_003238895.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ammonifex
           degensii KC4]
 gi|260864939|gb|ACX52045.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ammonifex
           degensii KC4]
          Length = 657

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 35/114 (30%), Gaps = 14/114 (12%)

Query: 24  LRYFFKA----KTTINYPFEKGSTSPRFRGE---HALRRYPNGEERCIACKLCEAICPAQ 76
           L+  F+          YP         F G       +R    +E+C  C  CE +CP +
Sbjct: 200 LKKLFQKVAGHPRIRLYPATTLEEVEGFVGNWEVKIKQRPSLVDEKCDRCGRCEEVCPVE 259

Query: 77  AITIE-------SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                                    RY ID+  C  CG C +ACP   I     
Sbjct: 260 VPDPFNYGLSSRKAIYFPYRDAFPSRYAIDLDHCTRCGECVKACPRGLIKLDRE 313



 Score = 38.9 bits (89), Expect = 0.25,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 13/73 (17%)

Query: 48  RGEHALRRYPNGEER--CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           RG+  L  +        C  C +C   C   A+ ++ G             +++   C  
Sbjct: 573 RGQVELEPFVAEVYPERCNGCGICVEECSYGALKLKDGKV-----------EVNEAVCQG 621

Query: 106 CGLCQEACPVDAI 118
           CG C   CP  A+
Sbjct: 622 CGACAAMCPQRAL 634


>gi|227355595|ref|ZP_03839990.1| electron transport complex protein [Proteus mirabilis ATCC 29906]
 gi|227164391|gb|EEI49280.1| electron transport complex protein [Proteus mirabilis ATCC 29906]
          Length = 673

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            N EE CI C  C   CP+  +  +       G         ++  CI CG C   CP
Sbjct: 374 DNVEEACIRCGQCVDACPSGLLPQQLY-WFSKGKEHEKAQQHNLFDCIECGACAFVCP 430


>gi|218549560|ref|YP_002383351.1| dihydropyrimidine dehydrogenase [Escherichia fergusonii ATCC 35469]
 gi|218357101|emb|CAQ89734.1| putative oxidoreductase subunit [Escherichia fergusonii ATCC 35469]
          Length = 411

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +       ++C+ C  C   C         G +  +   +T     +  K
Sbjct: 324 VPAEDLDRSYIVYPHINLDKCVGCGRCYISCYDG------GHQAMEWNEKTRTPHCNTEK 377

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 378 CVGCLLCGHVCPVGCIDLG 396


>gi|158321273|ref|YP_001513780.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
 gi|158141472|gb|ABW19784.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
          Length = 631

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 10/58 (17%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           E+CI C  C   CP   I+           +   R+ ID   CI CG C   CPV A+
Sbjct: 581 EKCIGCTKCARNCPVSCISG----------KVKERHVIDTEACIKCGNCMAVCPVGAV 628


>gi|159905432|ref|YP_001549094.1| ferredoxin [Methanococcus maripaludis C6]
 gi|159886925|gb|ABX01862.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           maripaludis C6]
          Length = 170

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 2/59 (3%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTV--RYDIDMIKCIYCGLCQEACPVDAIV 119
           CI C  C+  CP  AI +            +      ID  KC+YC  C + CPV A+ 
Sbjct: 52  CIGCGGCKNACPTNAIEMIPVEPVKITETYSKEAIPKIDYDKCVYCLYCHDFCPVFALF 110



 Score = 38.2 bits (87), Expect = 0.39,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           +    CI CG C+ ACP +AI   P
Sbjct: 47  VFSELCIGCGGCKNACPTNAIEMIP 71


>gi|156935094|ref|YP_001439010.1| hypothetical protein ESA_02945 [Cronobacter sakazakii ATCC BAA-894]
 gi|156533348|gb|ABU78174.1| hypothetical protein ESA_02945 [Cronobacter sakazakii ATCC BAA-894]
          Length = 990

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 29/89 (32%), Gaps = 4/89 (4%)

Query: 34  INYPFEKGST-SPRFRGEHALRRYPNGEERCIACKLCEAICP---AQAITIESGPRCHDG 89
           ++ P ++       +  +H+   Y    ++CI C  C   C                H  
Sbjct: 119 MHIPIQRYEYQRKPYVKDHSNPFYTYDPDQCILCGRCVEACQNVEVNETLSIDYTMAHPR 178

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                   I    C+ CG C   CP +A+
Sbjct: 179 VLWDGGETIAGSSCVSCGHCVTVCPCNAL 207


>gi|152991345|ref|YP_001357067.1| pyruvate flavodoxin oxidoreductase subunit delta [Nitratiruptor sp.
           SB155-2]
 gi|151423206|dbj|BAF70710.1| pyruvate:ferredoxin oxidoreductase, delta subunit [Nitratiruptor
           sp. SB155-2]
          Length = 143

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 10/80 (12%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P+   ++     G+  + +     + CI C+ C   C          P     +R     
Sbjct: 47  PYAPTNSHEWQVGDWRVEKPVYNRDLCIDCQFCWVFC----------PDISILSRDKKMI 96

Query: 97  DIDMIKCIYCGLCQEACPVD 116
            I    C  CG+C E CP +
Sbjct: 97  GIIYEHCKGCGICVEVCPTN 116


>gi|26247685|ref|NP_753725.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli CFT073]
 gi|227886213|ref|ZP_04004018.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli 83972]
 gi|300971597|ref|ZP_07171508.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           MS 45-1]
 gi|301046199|ref|ZP_07193372.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           MS 185-1]
 gi|306813626|ref|ZP_07447807.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli NC101]
 gi|26108087|gb|AAN80287.1|AE016760_146 Probable pyruvate-flavodoxin oxidoreductase [Escherichia coli
           CFT073]
 gi|227836417|gb|EEJ46883.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli 83972]
 gi|300301808|gb|EFJ58193.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           MS 185-1]
 gi|300411211|gb|EFJ94749.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           MS 45-1]
 gi|305852900|gb|EFM53345.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli NC101]
 gi|307553411|gb|ADN46186.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli ABU 83972]
 gi|315295387|gb|EFU54717.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           MS 153-1]
          Length = 1174

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 ILAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|85059431|ref|YP_455133.1| putative iron-sulfur binding NADH dehydrogenase [Sodalis
           glossinidius str. 'morsitans']
 gi|84779951|dbj|BAE74728.1| putative iron-sulfur binding NADH dehydrogenase [Sodalis
           glossinidius str. 'morsitans']
          Length = 663

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 34/103 (33%), Gaps = 3/103 (2%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C   CPA  +  +       G          +  CI CG C   CP   I  
Sbjct: 375 QSCIRCSRCADACPAS-LLPQQLYWFSRGQEHDKARQHHLFDCIECGACAYVCP-SNIPL 432

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
              +       + L  D  R      R+E+++ R    +   R
Sbjct: 433 VHYYRQQKAEIRALDDDARRAAMAKARYEAKLAR-REREKQQR 474


>gi|313672549|ref|YP_004050660.1| electron transport complex, rnfabcdge type, b subunit
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939305|gb|ADR18497.1| electron transport complex, RnfABCDGE type, B subunit
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 260

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/62 (43%), Positives = 32/62 (51%), Gaps = 11/62 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +  CIACKLC+  CP  AIT+E+               ID  KCI CG C+E CP  AI
Sbjct: 209 CKVACIACKLCQKNCPVDAITVENNLAY-----------IDPNKCINCGKCKEVCPTKAI 257

Query: 119 VE 120
            E
Sbjct: 258 NE 259



 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 5/78 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV-----RYDIDMIKCIYCGLCQEAC 113
             E+C AC  C   CP + I I    +    T R++       +   + CI C LCQ+ C
Sbjct: 164 DAEKCTACGACVKACPRKLIEIVPVDKRFTVTCRSIDKGVDAKNFCKVACIACKLCQKNC 223

Query: 114 PVDAIVEGPNFEFATETR 131
           PVDAI    N  +    +
Sbjct: 224 PVDAITVENNLAYIDPNK 241



 Score = 34.3 bits (77), Expect = 5.3,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 21/64 (32%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C+    C   C   AI I +               +D  KC  CG C +ACP   I
Sbjct: 134 CIYGCVGGGSCVTACKFDAIYIGNEGIP----------IVDAEKCTACGACVKACPRKLI 183

Query: 119 VEGP 122
              P
Sbjct: 184 EIVP 187


>gi|302392632|ref|YP_003828452.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Acetohalobium arabaticum DSM 5501]
 gi|302204709|gb|ADL13387.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Acetohalobium arabaticum DSM 5501]
          Length = 600

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 10/69 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L  Y   EE C AC +C+  CP  AIT                Y+ID   C  CG+C+E 
Sbjct: 542 LASYKIDEEACEACGVCKEECPVSAITGSKEEG----------YEIDPEICESCGICEEE 591

Query: 113 CPVDAIVEG 121
           CP + I  G
Sbjct: 592 CPFEVITRG 600



 Score = 38.9 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 18/54 (33%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           E         +          +    Y ID   C  CG+C+E CPV AI     
Sbjct: 519 EYFRDEYEAHVFDKYCPAGVCKDLASYKIDEEACEACGVCKEECPVSAITGSKE 572


>gi|326791118|ref|YP_004308939.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Clostridium
           lentocellum DSM 5427]
 gi|326541882|gb|ADZ83741.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Clostridium
           lentocellum DSM 5427]
          Length = 1179

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 32/112 (28%), Gaps = 29/112 (25%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRRTV-------- 94
           RG        N  + CI C  C  +CP   I       +      +G             
Sbjct: 675 RGVGIDVPEWN-IDTCIQCNQCSFVCPHACIRPVLVSEDEMKDAPEGFEAKKAVGKGLEG 733

Query: 95  ---RYDIDMIKCIYCGLCQEACPVDAIVEG------------PNFEFATETR 131
              R  +  + C  CG C + CP                   PN+EFA   +
Sbjct: 734 LVFRMQVSTMDCTGCGNCVDICPTKVKSLVMKPLATQVEKEIPNWEFAVSDK 785


>gi|261258339|ref|ZP_05950872.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Escherichia coli O157:H7 str. FRIK966]
          Length = 589

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPADLLPQQLY-WFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|261253563|ref|ZP_05946136.1| electron transport complex protein RnfC [Vibrio orientalis CIP
           102891]
 gi|260936954|gb|EEX92943.1| electron transport complex protein RnfC [Vibrio orientalis CIP
           102891]
          Length = 881

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 37/104 (35%), Gaps = 9/104 (8%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C  C   CPA  +  +               ++++  CI CG C   CP   I    
Sbjct: 378 CIRCGQCAEACPAS-LLPQQLLWHSKAEELDKCEELNIKDCIECGACAFVCP-SEIPLVQ 435

Query: 123 NFEFAT---ETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            +  A     TR+E   + E       R+E +  R +  D   R
Sbjct: 436 YYRQAKAEIRTRKE---ESEAAERAKVRFEEKKAR-LERDKAAR 475



 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 91  RRTVRYDIDMIKCIYCGLCQEACP 114
           R+ +  +   + CI CG C EACP
Sbjct: 366 RKEISPNQYEMACIRCGQCAEACP 389


>gi|260893623|ref|YP_003239720.1| hydrogenase, Fe-only [Ammonifex degensii KC4]
 gi|260865764|gb|ACX52870.1| hydrogenase, Fe-only [Ammonifex degensii KC4]
          Length = 578

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 30/93 (32%), Gaps = 7/93 (7%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93
           + +P  +            +R       +CI C+ C  +C           +  DG    
Sbjct: 122 VRFPRVRREFPVDDSSAAIIR----DPNKCIVCRRCVTVCENIQTVGVLELQKVDGQAIV 177

Query: 94  VR---YDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                  +    C+ CG C   CPV AI E  +
Sbjct: 178 GVKGGVPLAETNCVQCGQCALVCPVGAIYERDD 210


>gi|291614940|ref|YP_003525097.1| electron transport complex, RnfABCDGE type, C subunit [Sideroxydans
           lithotrophicus ES-1]
 gi|291585052|gb|ADE12710.1| electron transport complex, RnfABCDGE type, C subunit [Sideroxydans
           lithotrophicus ES-1]
          Length = 447

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 41/129 (31%), Gaps = 11/129 (8%)

Query: 5   RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64
           + N S + L   +    +          +++ P  KG++     G   L         CI
Sbjct: 324 KSNASEIILGGPMMGMTIS---------SLDVPVTKGTSGVLAFGRAQLPEEAPKVYSCI 374

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
            C  C  +CP      + G          +    ++ +C  CG C   CP   I     F
Sbjct: 375 KCGECLKVCPKFLNPSQLGLLAAKREYEEMAERYNLDRCFECGCCSYVCPSH-IPLVQQF 433

Query: 125 EFATE-TRQ 132
             A    R+
Sbjct: 434 RIAKAVNRE 442


>gi|251790931|ref|YP_003005652.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Dickeya zeae
           Ech1591]
 gi|247539552|gb|ACT08173.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Dickeya zeae
           Ech1591]
          Length = 1177

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 30/127 (23%), Gaps = 26/127 (20%)

Query: 31  KTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88
             +   P        +   +   A +        C  C  C A CP  AI  +  P    
Sbjct: 655 PVSALPPDGTWPVGTTQWEKRNIAEQIPLWKPALCTQCNHCVAACPHSAIRAKVVPAEAM 714

Query: 89  ----------------GTRRTVRYDIDMIKCIYCGLCQEACPV--------DAIVEGPNF 124
                              +     +    C  C LC E CP          AI   P  
Sbjct: 715 ADAPASLQSLDVKARDMRGQKYVLQVAPEDCTGCNLCVEVCPAKDRQNPDIKAINMEPRL 774

Query: 125 EFATETR 131
           E     +
Sbjct: 775 EHVATEK 781


>gi|239831126|ref|ZP_04679455.1| dihydroorotate dehydrogenase family protein [Ochrobactrum
           intermedium LMG 3301]
 gi|239823393|gb|EEQ94961.1| dihydroorotate dehydrogenase family protein [Ochrobactrum
           intermedium LMG 3301]
          Length = 436

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 6/79 (7%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI C  C   C     + ++     +G R    +++   +C+ 
Sbjct: 330 QYLNLNYVTKARINQDLCIKCGRCHIACED--TSHQAITNLVNGAR---HFEVIDEECVG 384

Query: 106 CGLCQEACPV-DAIVEGPN 123
           C LC   CPV D I     
Sbjct: 385 CNLCVNVCPVEDCITMEQI 403


>gi|147678456|ref|YP_001212671.1| hypothetical protein PTH_2121 [Pelotomaculum thermopropionicum SI]
 gi|146274553|dbj|BAF60302.1| Uncharacterized Fe-S center protein [Pelotomaculum
           thermopropionicum SI]
          Length = 367

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 26/60 (43%), Gaps = 11/60 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E+C  C+ C   CPAQAI             R     +D  KCI CG C   CPV AI
Sbjct: 191 NPEKCTGCERCSQWCPAQAI-----------GVRGRVSVVDENKCIGCGECTVTCPVHAI 239


>gi|197117837|ref|YP_002138264.1| benzoyl-CoA reductase electron transfer protein [Geobacter
           bemidjiensis Bem]
 gi|197087197|gb|ACH38468.1| benzoyl-CoA reductase electron transfer protein, putative
           [Geobacter bemidjiensis Bem]
          Length = 636

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 35/98 (35%), Gaps = 17/98 (17%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            L+Y F+ +   +   ++            L  +     +C  C  C   CPA AI    
Sbjct: 534 TLKY-FRHEYEAHIKEKRCPALSC----KELIAFHIDPAKCKGCGSCLRKCPATAIEG-- 586

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP--VDAI 118
                    +   + ID  KC  CG C EACP    AI
Sbjct: 587 --------GKKTIHVIDQEKCTKCGTCIEACPAAFHAI 616



 Score = 38.5 bits (88), Expect = 0.31,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 18/53 (33%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           +         I+         +  + + ID  KC  CG C   CP  AI  G 
Sbjct: 536 KYFRHEYEAHIKEKRCPALSCKELIAFHIDPAKCKGCGSCLRKCPATAIEGGK 588


>gi|94266270|ref|ZP_01289976.1| Pyruvate:ferredoxin (flavodoxin) oxidoreductase [delta
           proteobacterium MLMS-1]
 gi|93453152|gb|EAT03620.1| Pyruvate:ferredoxin (flavodoxin) oxidoreductase [delta
           proteobacterium MLMS-1]
          Length = 1181

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 29/109 (26%), Gaps = 26/109 (23%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR- 91
           T    +EK + +                  CI C  C   CP  AI ++         + 
Sbjct: 672 TGTTQYEKRNIAVHVPEWL--------PTNCIQCGRCSLACPHAAIRMKMVKSADLKGKS 723

Query: 92  ---------------RTVRYDIDMIKCIYCGLCQEACP--VDAIVEGPN 123
                          R     +    C  C LC E CP    A+    N
Sbjct: 724 KSFKSVKGVGKQFSGREACLQVFTEDCCGCTLCVEVCPAKTKALKMIDN 772


>gi|86140148|ref|ZP_01058710.1| formate dehydrogenase, alpha subunit [Roseobacter sp. MED193]
 gi|85823085|gb|EAQ43298.1| formate dehydrogenase, alpha subunit [Roseobacter sp. MED193]
          Length = 924

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK----CIYCGLCQEACP 114
             + CI+C LC   C  +    +       G      +DI        C+ CG C +ACP
Sbjct: 147 NLDACISCGLCVRACR-EVQVNDVIGMAGRGHDAYPVFDIADDMGASSCVACGECVQACP 205

Query: 115 VDAIV 119
             A++
Sbjct: 206 TGALM 210


>gi|303245643|ref|ZP_07331926.1| hydrogenase, Fe-only [Desulfovibrio fructosovorans JJ]
 gi|302492906|gb|EFL52771.1| hydrogenase, Fe-only [Desulfovibrio fructosovorans JJ]
          Length = 585

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 6/79 (7%)

Query: 59  GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115
             ++CI C+ CE +C   Q   + SG            +++++    C  CG C   CP 
Sbjct: 149 DMDKCIMCRRCETMCNTVQTCGVLSGVNRGFTAVVAPAFEMNLADTVCTNCGQCVAVCPT 208

Query: 116 DAIVEGPNFEFATETRQEL 134
            A+V     E+  E  + L
Sbjct: 209 GALV---EHEYIWEVVEAL 224


>gi|302393026|ref|YP_003828846.1| NAD-dependent formate dehydrogenase catalytic subunit
           [Acetohalobium arabaticum DSM 5501]
 gi|302205103|gb|ADL13781.1| NAD-dependent formate dehydrogenase catalytic subunit
           [Acetohalobium arabaticum DSM 5501]
          Length = 901

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 5/71 (7%)

Query: 57  PNGEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDIDMI----KCIYCGLCQE 111
                +CI C  C  +    Q        +     + +  Y+ D+      C++CG C E
Sbjct: 141 EYDPNKCILCGRCVKVDQEIQCSDALEFSQRGHEAQVSTAYEQDLSGEDSDCVFCGQCVE 200

Query: 112 ACPVDAIVEGP 122
            CP  A+   P
Sbjct: 201 VCPTGALTYKP 211



 Score = 34.3 bits (77), Expect = 5.6,   Method: Composition-based stats.
 Identities = 13/79 (16%), Positives = 22/79 (27%), Gaps = 2/79 (2%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
                 C     C     ++ I   +     +   +    + D  KCI CG C +     
Sbjct: 101 CEKSGNCKLQDYCYEYNVSEPIFGTNEKEGLEIKDKNPFIEYDPNKCILCGRCVKV--DQ 158

Query: 117 AIVEGPNFEFATETRQELY 135
            I      EF+    +   
Sbjct: 159 EIQCSDALEFSQRGHEAQV 177


>gi|255527959|ref|ZP_05394800.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           carboxidivorans P7]
 gi|296188409|ref|ZP_06856800.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
 gi|255508353|gb|EET84752.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           carboxidivorans P7]
 gi|296047030|gb|EFG86473.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
          Length = 368

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 12/79 (15%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           + +HAL+      ++C+ C  C  +CP QAITIE+               +   KCI CG
Sbjct: 181 KEQHALKMDVQN-DKCVGCGQCAKVCPEQAITIENRKAS-----------VSHDKCIGCG 228

Query: 108 LCQEACPVDAIVEGPNFEF 126
            C   C   AI    + E 
Sbjct: 229 ECMTVCKPKAIGMDWSSEM 247



 Score = 40.5 bits (93), Expect = 0.075,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 65  ACKLCEAICPAQAIT---IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
             K  E      AI    +   P      +  ++ D+   KC+ CG C + CP  AI   
Sbjct: 154 HFKGHEMAGFGGAIKNLGMGGAPAIGKKEQHALKMDVQNDKCVGCGQCAKVCPEQAITIE 213

Query: 122 P 122
            
Sbjct: 214 N 214


>gi|253747322|gb|EET02101.1| Hypothetical protein GL50581_641 [Giardia intestinalis ATCC 50581]
          Length = 462

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 24/72 (33%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                  +RCI C  C  +C +Q I +                 +    C+ CG C   C
Sbjct: 5   HMITFDSDRCIGCSKCVQVCDSQGIRVFKNGIGPRSKPVVKLGSLANSDCVGCGQCIHEC 64

Query: 114 PVDAIVEGPNFE 125
           P  AI    + E
Sbjct: 65  PAGAIYPYIDIE 76


>gi|225871979|ref|YP_002753433.1| NADH dehydrogenase I, G subunit [Acidobacterium capsulatum ATCC
           51196]
 gi|225793126|gb|ACO33216.1| NADH dehydrogenase I, G subunit [Acidobacterium capsulatum ATCC
           51196]
          Length = 781

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 24/63 (38%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              RCI C  C  +C         G +             D ++C  CG+C + CPV A+
Sbjct: 144 DRPRCILCYRCVRVCGEGMDVWALGIQNRGAGAVIAPNKQDHLECEECGMCIDICPVGAL 203

Query: 119 VEG 121
             G
Sbjct: 204 TSG 206


>gi|225389409|ref|ZP_03759133.1| hypothetical protein CLOSTASPAR_03156 [Clostridium asparagiforme
           DSM 15981]
 gi|225044530|gb|EEG54776.1| hypothetical protein CLOSTASPAR_03156 [Clostridium asparagiforme
           DSM 15981]
          Length = 320

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 26/87 (29%), Gaps = 8/87 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +         G   +       ERC++C  CE  C                +    R
Sbjct: 145 CPNDCAKVRMHDFGIMGMTEPQYRAERCVSCGACEKAC--------KRKSVGALSMVNYR 196

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGP 122
              +  KCI CG C   CP  A V   
Sbjct: 197 IQRNHEKCIGCGECVIQCPTRAWVRSD 223


>gi|171060331|ref|YP_001792680.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Leptothrix cholodnii
           SP-6]
 gi|170777776|gb|ACB35915.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Leptothrix cholodnii
           SP-6]
          Length = 431

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 11/67 (16%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            ++++    E CI C  CEAICP QAIT +S             Y +D +KC  C  C  
Sbjct: 9   VIKQHLIDPEICIRCNTCEAICPVQAITHDS-----------RNYVVDAVKCNLCMACIS 57

Query: 112 ACPVDAI 118
            CP  +I
Sbjct: 58  PCPTGSI 64



 Score = 37.4 bits (85), Expect = 0.64,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 14/37 (37%)

Query: 84  PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
                      ++ ID   CI C  C+  CPV AI  
Sbjct: 1   MNAPTDAAVIKQHLIDPEICIRCNTCEAICPVQAITH 37


>gi|168186747|ref|ZP_02621382.1| polyferredoxin [Clostridium botulinum C str. Eklund]
 gi|169295268|gb|EDS77401.1| polyferredoxin [Clostridium botulinum C str. Eklund]
          Length = 294

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQEAC 113
            ++ C+AC  C + CP   I +    +      +   R     +I    CI CGLC +AC
Sbjct: 167 NKDNCVACGACVSTCPKNIIELVPKKQLVIVSCNSHDRGLDVKNICSTGCIGCGLCAKAC 226

Query: 114 PVDAIVEGPNFEFATETR 131
           P DAI    N      ++
Sbjct: 227 PKDAITMENNLPVIDYSK 244



 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 31/90 (34%), Gaps = 11/90 (12%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
                  P ++         +  L         CI C LC   CP  AIT+E+       
Sbjct: 183 KNIIELVPKKQLVIVSCNSHDRGLDVKNICSTGCIGCGLCAKACPKDAITMENNLPV--- 239

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
                   ID  KC+ CGLC   CP  AI 
Sbjct: 240 --------IDYSKCVNCGLCAMKCPTKAIQ 261


>gi|167765080|ref|ZP_02437193.1| hypothetical protein BACSTE_03466 [Bacteroides stercoris ATCC
           43183]
 gi|167696708|gb|EDS13287.1| hypothetical protein BACSTE_03466 [Bacteroides stercoris ATCC
           43183]
          Length = 1185

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 32/90 (35%), Gaps = 15/90 (16%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGP 84
           E+G+     RG  A     N  E CI C  C  +CP                A   +   
Sbjct: 667 EQGTAKYEKRGVAAFVPEWN-PENCIQCNKCAYVCPHASIRPFVLDAEEQKGAEFSQLKA 725

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                   T R  +D++ C+ CG C + CP
Sbjct: 726 VGKAFEGMTFRMQVDVLDCLGCGNCADICP 755


>gi|167590078|ref|ZP_02382466.1| dihydroorotate dehydrogenase family protein [Burkholderia ubonensis
           Bu]
          Length = 435

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 6/76 (7%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   +   +    ++RCI C LC   C     + ++  R  DG R    +++   +C+ 
Sbjct: 328 QYLNLNYDIKARIDQDRCIQCGLCHIACED--TSHQAITREKDGVR---HFEVIDAECVG 382

Query: 106 CGLCQEACPV-DAIVE 120
           C LC   CPV   I  
Sbjct: 383 CNLCMHVCPVEQCITM 398


>gi|148379808|ref|YP_001254349.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A str. ATCC 3502]
 gi|153931627|ref|YP_001384106.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A str. ATCC 19397]
 gi|153936195|ref|YP_001387646.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium
           botulinum A str. Hall]
 gi|148289292|emb|CAL83388.1| putative electron-transferring subunit of iron-only hydrogenase
           [Clostridium botulinum A str. ATCC 3502]
 gi|152927671|gb|ABS33171.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum A str. ATCC 19397]
 gi|152932109|gb|ABS37608.1| putative iron hydrogenase, electron-transfer subunit [Clostridium
           botulinum A str. Hall]
          Length = 631

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 10/63 (15%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           +    ++CI C  C   CP   I            +   ++ I+  KCI CG C  ACPV
Sbjct: 576 HYEITDKCIGCTKCARGCPVSCIIG----------KVKEKHFINQEKCIKCGNCYSACPV 625

Query: 116 DAI 118
            AI
Sbjct: 626 GAI 628


>gi|75410723|sp|Q9AIX6|BOXA_AZOEV RecName: Full=Benzoyl-CoA oxygenase component A; AltName:
           Full=Benzoyl-CoA 2,3-dioxygenase subunit A; AltName:
           Full=Benzoyl-CoA dioxygenase reductase component
 gi|12655805|gb|AAK00600.1|AF220510_2 BoxA [Azoarcus evansii]
 gi|23664440|gb|AAN39377.1| benzoyl-CoA oxygenase component A [Azoarcus evansii]
          Length = 414

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 11/65 (16%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           R++    E CI C  CE ICP  AIT +S             Y +    C  C  C   C
Sbjct: 12  RQHLIDPEICIRCNTCEEICPVDAITHDS-----------RNYVVKFETCNGCLACISPC 60

Query: 114 PVDAI 118
           P  AI
Sbjct: 61  PTGAI 65



 Score = 38.2 bits (87), Expect = 0.45,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)

Query: 98  IDMIKCIYCGLCQEACPVDAI-VEGPNFEFATET 130
           ID   CI C  C+E CPVDAI  +  N+    ET
Sbjct: 16  IDPEICIRCNTCEEICPVDAITHDSRNYVVKFET 49


>gi|329896722|ref|ZP_08271702.1| Glutamate synthase [NADPH] small chain [gamma proteobacterium
           IMCC3088]
 gi|328921593|gb|EGG28970.1| Glutamate synthase [NADPH] small chain [gamma proteobacterium
           IMCC3088]
          Length = 566

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 29/98 (29%), Gaps = 21/98 (21%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT-------------- 93
           R  +   +    E RCI C  C  ICP   IT  +        R                
Sbjct: 459 RCLNCDVQTVFDETRCIECDACVDICPTDCITFTANEDDESVLRSKLTGPSHNLATDLYV 518

Query: 94  -------VRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
                       D   C++CGLC E CP  A      F
Sbjct: 519 SAELPTARVMVKDENICLHCGLCAERCPTTAWDMQKYF 556



 Score = 38.2 bits (87), Expect = 0.42,   Method: Composition-based stats.
 Identities = 10/38 (26%), Positives = 13/38 (34%)

Query: 84  PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
                     V+   D  +CI C  C + CP D I   
Sbjct: 455 KEAERCLNCDVQTVFDETRCIECDACVDICPTDCITFT 492


>gi|324019506|gb|EGB88725.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 117-3]
          Length = 543

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 338 PQEEQSCIRCSACADACPADLLPQQLY-WFSKGQQHDKATTHNIADCIECGACAWVCP-S 395

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 396 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 444


>gi|159905364|ref|YP_001549026.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C6]
 gi|159886857|gb|ABX01794.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           maripaludis C6]
          Length = 395

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 1/75 (1%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E+C  C  C   CP  AI + +       +++      +   CI CG C   CP  A+  
Sbjct: 266 EKCAYCGPCALKCPTGAIKVVNPKGLELPSKKKTEKANEFAMCIRCGACAMKCPTGALKM 325

Query: 121 GP-NFEFATETRQEL 134
           G    E    TR E 
Sbjct: 326 GKVVHEGKEYTRVEF 340



 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++CI C +C   CP  AI   +G       +    + ++  +CI C  C EACP   I
Sbjct: 156 DTDKCIYCTVCSQTCPWNAIF-VAGKLPQKRQKTIKSFTVNEEECIGCEKCVEACPGSMI 214



 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 3/66 (4%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           N    CI C  C   CP  A+ +    +     +   R +     C  CG C + CP   
Sbjct: 303 NEFAMCIRCGACAMKCPTGALKM---GKVVHEGKEYTRVEFSPALCNECGECVDVCPQKT 359

Query: 118 IVEGPN 123
           +    +
Sbjct: 360 LELTGD 365



 Score = 39.3 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 1/71 (1%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK-CIYCGLCQEA 112
            R+P  +  C+ C+ C  ICP + I++              +  I + K C+ CG+C   
Sbjct: 82  NRFPYSKGHCVLCEKCVDICPVEIISLPGKAEKPKKEVVIPQEPIAVTKDCVACGVCVPE 141

Query: 113 CPVDAIVEGPN 123
           CPVDAI     
Sbjct: 142 CPVDAISIEDI 152



 Score = 37.0 bits (84), Expect = 0.98,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 12/59 (20%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           + C+AC +C   CP  AI+IE                ID  KCIYC +C + CP +AI 
Sbjct: 130 KDCVACGVCVPECPVDAISIEDIAV------------IDTDKCIYCTVCSQTCPWNAIF 176



 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 1/56 (1%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C AC LC   CP +AI +E                +   KC YCG C   CP  AI
Sbjct: 229 CPACGLCVESCPVEAIGLEVEYASAKPVTDEGLVWL-EEKCAYCGPCALKCPTGAI 283



 Score = 35.1 bits (79), Expect = 3.5,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 17/78 (21%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDG-----------------TRRTVRYDIDMIK 102
            + CI C  C   CP  A+ ++ G    +G                  +   R+      
Sbjct: 31  FKTCIQCFSCANACPTGALIVKDGKLVFNGSKCDLDGACQKACPTGIKKVDNRFPYSKGH 90

Query: 103 CIYCGLCQEACPVDAIVE 120
           C+ C  C + CPV+ I  
Sbjct: 91  CVLCEKCVDICPVEIISL 108


>gi|145598115|ref|YP_001162191.1| pyruvate-flavodoxin oxidoreductase [Yersinia pestis Pestoides F]
 gi|145209811|gb|ABP39218.1| pyruvate-flavodoxin oxidoreductase [Yersinia pestis Pestoides F]
          Length = 1177

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 30/136 (22%), Gaps = 32/136 (23%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A        + C  C  C A C
Sbjct: 646 MLAGLGDTL------PVSAFPPDGTWPVGTTQWEKRNIAENIPIWQPDLCTQCNHCVAAC 699

Query: 74  --------------PAQAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPV-- 115
                          A A              R  +Y   +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVQPEAMAGAPDSLQSLDVKARDMRGQKYILQVAPEDCTGCNLCYEVCPAKD 759

Query: 116 ------DAIVEGPNFE 125
                  AI   P  E
Sbjct: 760 RQNPEIKAINMRPRLE 775


>gi|74318035|ref|YP_315775.1| electron transport complex protein RnfC [Thiobacillus denitrificans
           ATCC 25259]
 gi|74057530|gb|AAZ97970.1| Electron transport complex, RnfABCDGE type, C subunit [Thiobacillus
           denitrificans ATCC 25259]
          Length = 558

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/102 (22%), Positives = 36/102 (35%), Gaps = 11/102 (10%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            CI C  C   CPA+    E       G     + +  +  CI CG C   CP   I   
Sbjct: 367 PCIRCTRCADACPAELQPQELFRFAKAGDFGRAQ-EYHLFDCIECGCCSYVCPSH-IPLV 424

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
             + +A        + +E+     D+  S++ R       +R
Sbjct: 425 DFYRYAKSE----IWAREK-----DKRASDLARERHEFRQFR 457


>gi|22125891|ref|NP_669314.1| oxidoreductase, Fe-S subunit [Yersinia pestis KIM 10]
 gi|45441913|ref|NP_993452.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108807678|ref|YP_651594.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia pestis
           Antiqua]
 gi|108811955|ref|YP_647722.1| pyruvate-flavodoxin oxidoreductase [Yersinia pestis Nepal516]
 gi|149365754|ref|ZP_01887789.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia pestis
           CA88-4125]
 gi|165926479|ref|ZP_02222311.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165938637|ref|ZP_02227193.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166010705|ref|ZP_02231603.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166210534|ref|ZP_02236569.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167400853|ref|ZP_02306359.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167422057|ref|ZP_02313810.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167424879|ref|ZP_02316632.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167467095|ref|ZP_02331799.1| pyruvate-flavodoxin oxidoreductase [Yersinia pestis FV-1]
 gi|218929426|ref|YP_002347301.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia pestis CO92]
 gi|229837855|ref|ZP_04458014.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229895013|ref|ZP_04510191.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia pestis
           Pestoides A]
 gi|229898416|ref|ZP_04513563.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229902263|ref|ZP_04517383.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia pestis
           Nepal516]
 gi|270490554|ref|ZP_06207628.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Yersinia pestis
           KIM D27]
 gi|294503653|ref|YP_003567715.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia pestis
           Z176003]
 gi|21958826|gb|AAM85565.1|AE013802_10 putative oxidoreductase, Fe-S subunit [Yersinia pestis KIM 10]
 gi|45436776|gb|AAS62329.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108775603|gb|ABG18122.1| pyruvate-flavodoxin oxidoreductase [Yersinia pestis Nepal516]
 gi|108779591|gb|ABG13649.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia pestis
           Antiqua]
 gi|115348037|emb|CAL20962.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia pestis CO92]
 gi|149292167|gb|EDM42241.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia pestis
           CA88-4125]
 gi|165913511|gb|EDR32132.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165921700|gb|EDR38897.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165990407|gb|EDR42708.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166207714|gb|EDR52194.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166958869|gb|EDR55890.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167049706|gb|EDR61114.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167056066|gb|EDR65844.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|229680598|gb|EEO76694.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia pestis
           Nepal516]
 gi|229688706|gb|EEO80775.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229694221|gb|EEO84268.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229702108|gb|EEO90129.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia pestis
           Pestoides A]
 gi|262362229|gb|ACY58950.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia pestis
           D106004]
 gi|262365562|gb|ACY62119.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia pestis
           D182038]
 gi|270339058|gb|EFA49835.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Yersinia pestis
           KIM D27]
 gi|294354112|gb|ADE64453.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia pestis
           Z176003]
 gi|320014991|gb|ADV98562.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 1177

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 30/136 (22%), Gaps = 32/136 (23%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A        + C  C  C A C
Sbjct: 646 MLAGLGDTL------PVSAFPPDGTWPVGTTQWEKRNIAENIPIWQPDLCTQCNHCVAAC 699

Query: 74  --------------PAQAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPV-- 115
                          A A              R  +Y   +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVQPEAMAGAPDSLQSLDVKARDMRGQKYILQVAPEDCTGCNLCYEVCPAKD 759

Query: 116 ------DAIVEGPNFE 125
                  AI   P  E
Sbjct: 760 RQNPEIKAINMRPRLE 775


>gi|332311234|gb|EGJ24329.1| Pyruvate-flavodoxin oxidoreductase [Listeria monocytogenes str.
           Scott A]
          Length = 1215

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 34/104 (32%), Gaps = 16/104 (15%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCH 87
              T+   +   AL       E C  C  C  +CP  AI              E      
Sbjct: 669 PPGTAAYEKRGIALEVPEWISENCTMCNECAFVCPHAAIRPILTDEEEMESAPEGFMTRE 728

Query: 88  DGTRRTVRYDID--MIKCIYCGLCQEACPV--DAIVEGPNFEFA 127
              +  +RY I    + C  C LC E CP    A+V  P  E A
Sbjct: 729 MRGKDGLRYRIQVSPMDCTGCNLCAETCPAKDKALVMKPFEEVA 772



 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 5/80 (6%)

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV--EGPNFEFATETRQ 132
           + A    +      G    V   I    C  C  C   CP  AI        E   E+  
Sbjct: 665 SGAYPPGTAAYEKRGIALEVPEWI-SENCTMCNECAFVCPHAAIRPILTDEEEM--ESAP 721

Query: 133 ELYYDKERLLNNGDRWESEI 152
           E +  +E    +G R+  ++
Sbjct: 722 EGFMTREMRGKDGLRYRIQV 741


>gi|328475530|gb|EGF46289.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria
           monocytogenes 220]
          Length = 1116

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 34/104 (32%), Gaps = 16/104 (15%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCH 87
              T+   +   AL       E C  C  C  +CP  AI              E      
Sbjct: 669 PPGTAAYEKRGIALEVPEWISENCTMCNECAFVCPHAAIRPILTDGEEMESAPEGFMTRE 728

Query: 88  DGTRRTVRYDID--MIKCIYCGLCQEACPV--DAIVEGPNFEFA 127
              +  +RY I    + C  C LC E CP    A+V  P  E A
Sbjct: 729 MRGKDGLRYRIQVSPMDCTGCNLCAETCPAKDKALVMKPFEEVA 772


>gi|325968156|ref|YP_004244348.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Vulcanisaeta
           moutnovskia 768-28]
 gi|323707359|gb|ADY00846.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Vulcanisaeta
           moutnovskia 768-28]
          Length = 1137

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 20/62 (32%), Gaps = 10/62 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              +C  C LC   CP  AI    G             +     C  CG C   CP DAI
Sbjct: 925 DWSKCTKCGLCIKACPYGAIRGVPGK----------WIEHIPAACQGCGSCVAECPQDAI 974

Query: 119 VE 120
             
Sbjct: 975 TL 976



 Score = 38.2 bits (87), Expect = 0.36,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 18/49 (36%)

Query: 74  PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            A A            T+       D  KC  CGLC +ACP  AI   P
Sbjct: 900 YAAASRALMMLAQGYVTKEPFIPKFDWSKCTKCGLCIKACPYGAIRGVP 948



 Score = 34.3 bits (77), Expect = 5.4,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 12/29 (41%)

Query: 87  HDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
               R  V+       C  CG C++ CPV
Sbjct: 89  DFKARILVKPRYVTDDCTKCGQCEDVCPV 117


>gi|313624527|gb|EFR94520.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Listeria innocua
           FSL J1-023]
          Length = 1216

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 34/104 (32%), Gaps = 16/104 (15%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCH 87
              T+   +   AL       E C  C  C  +CP  AI              E      
Sbjct: 669 PPGTAAYEKRGIALEVPEWISENCTMCNECAFVCPHAAIRPILTNEEEMEAAPEGFMTRE 728

Query: 88  DGTRRTVRYDID--MIKCIYCGLCQEACPV--DAIVEGPNFEFA 127
              +  +RY I    + C  C LC E CP    A+V  P  E A
Sbjct: 729 MRGKDGLRYRIQVSPMDCTGCNLCAETCPAKDKALVMKPFEEVA 772



 Score = 35.5 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 25/80 (31%), Gaps = 5/80 (6%)

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV--EGPNFEFATETRQ 132
           + A    +      G    V   I    C  C  C   CP  AI        E   E   
Sbjct: 665 SGAYPPGTAAYEKRGIALEVPEWI-SENCTMCNECAFVCPHAAIRPILTNEEEM--EAAP 721

Query: 133 ELYYDKERLLNNGDRWESEI 152
           E +  +E    +G R+  ++
Sbjct: 722 EGFMTREMRGKDGLRYRIQV 741


>gi|313609916|gb|EFR85316.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Listeria
           monocytogenes FSL F2-208]
          Length = 1215

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 34/104 (32%), Gaps = 16/104 (15%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCH 87
              T+   +   AL       E C  C  C  +CP  AI              E      
Sbjct: 669 PPGTAAYEKRGIALEVPEWISENCTMCNECAFVCPHAAIRPILTDEEEMESAPEGFMTRE 728

Query: 88  DGTRRTVRYDID--MIKCIYCGLCQEACPV--DAIVEGPNFEFA 127
              +  +RY I    + C  C LC E CP    A+V  P  E A
Sbjct: 729 MRGKDGLRYRIQVSPMDCTGCNLCAETCPAKDKALVMKPFEEVA 772



 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 5/80 (6%)

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV--EGPNFEFATETRQ 132
           + A    +      G    V   I    C  C  C   CP  AI        E   E+  
Sbjct: 665 SGAYPPGTAAYEKRGIALEVPEWI-SENCTMCNECAFVCPHAAIRPILTDEEEM--ESAP 721

Query: 133 ELYYDKERLLNNGDRWESEI 152
           E +  +E    +G R+  ++
Sbjct: 722 EGFMTREMRGKDGLRYRIQV 741


>gi|304313913|ref|YP_003849060.1| formate dehydrogenase, alpha chain [Methanothermobacter
           marburgensis str. Marburg]
 gi|302587372|gb|ADL57747.1| predicted formate dehydrogenase, alpha chain [Methanothermobacter
           marburgensis str. Marburg]
          Length = 887

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 59  GEERCIACKLCEAICP---AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
             ++CI C +C  +C    A+A+                R DI    C+ CG C EACPV
Sbjct: 147 NHDKCILCGICVRVCRGLGAEAVDFAYRGHDTRIATFMDR-DILDSSCVSCGECVEACPV 205

Query: 116 DAI 118
            A+
Sbjct: 206 GAL 208


>gi|294495627|ref|YP_003542120.1| CoB--CoM heterodisulfide reductase subunit A [Methanohalophilus
           mahii DSM 5219]
 gi|292666626|gb|ADE36475.1| CoB--CoM heterodisulfide reductase subunit A [Methanohalophilus
           mahii DSM 5219]
          Length = 784

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 11/66 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               + CI C +C  +C    I IE+G              +D + C  CG C  ACPVD
Sbjct: 574 HVDYDTCIGCGVCTDVCDYGTIKIENGKAF-----------VDEVSCHGCGTCSAACPVD 622

Query: 117 AIVEGP 122
           AI    
Sbjct: 623 AISMHN 628



 Score = 38.5 bits (88), Expect = 0.32,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 28/83 (33%), Gaps = 8/83 (9%)

Query: 46  RFRGEHALRRYPNGEERCIAC-KLCEAICPAQAITIES-------GPRCHDGTRRTVRYD 97
            F      +     EE+C  C   C  +CP +  +                         
Sbjct: 226 NFEVTGITQPRYVSEEKCKGCVDECSRVCPVEIPSRFDSGLGKSRAINIPIPQAVPQVAY 285

Query: 98  IDMIKCIYCGLCQEACPVDAIVE 120
           ID   C+ CGLC +ACP DA+  
Sbjct: 286 IDGDYCVGCGLCAQACPADAVEF 308


>gi|289422577|ref|ZP_06424420.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Peptostreptococcus anaerobius 653-L]
 gi|289157149|gb|EFD05771.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Peptostreptococcus anaerobius 653-L]
          Length = 595

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 6/71 (8%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R +     +      CI CK C          +           ++    ID  +C+ CG
Sbjct: 525 RYKVKETPFEVDPTVCIGCKTC---IKTNCPPLRMKKYDGIEKLKSS---IDPNQCVGCG 578

Query: 108 LCQEACPVDAI 118
           +C + CPV AI
Sbjct: 579 ICAQVCPVGAI 589


>gi|255521988|ref|ZP_05389225.1| pyruvate-flavodoxin oxidoreductase [Listeria monocytogenes FSL
           J1-175]
          Length = 1215

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 34/104 (32%), Gaps = 16/104 (15%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCH 87
              T+   +   AL       E C  C  C  +CP  AI              E      
Sbjct: 669 PPGTAAYEKRGIALEVPEWISENCTMCNECAFVCPHAAIRPILTDEEEMESAPEGFMTRE 728

Query: 88  DGTRRTVRYDID--MIKCIYCGLCQEACPV--DAIVEGPNFEFA 127
              +  +RY I    + C  C LC E CP    A+V  P  E A
Sbjct: 729 MRGKDGLRYRIQVSPMDCTGCNLCAETCPAKDKALVMKPFEEVA 772



 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 5/80 (6%)

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV--EGPNFEFATETRQ 132
           + A    +      G    V   I    C  C  C   CP  AI        E   E+  
Sbjct: 665 SGAYPPGTAAYEKRGIALEVPEWI-SENCTMCNECAFVCPHAAIRPILTDEEEM--ESAP 721

Query: 133 ELYYDKERLLNNGDRWESEI 152
           E +  +E    +G R+  ++
Sbjct: 722 EGFMTREMRGKDGLRYRIQV 741


>gi|254992629|ref|ZP_05274819.1| pyruvate-flavodoxin oxidoreductase [Listeria monocytogenes FSL
           J2-064]
          Length = 1215

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 34/104 (32%), Gaps = 16/104 (15%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCH 87
              T+   +   AL       E C  C  C  +CP  AI              E      
Sbjct: 669 PPGTAAYEKRGIALEVPEWISENCTMCNECAFVCPHAAIRPILTDEEEMESAPEGFMTRE 728

Query: 88  DGTRRTVRYDID--MIKCIYCGLCQEACPV--DAIVEGPNFEFA 127
              +  +RY I    + C  C LC E CP    A+V  P  E A
Sbjct: 729 MRGKDGLRYRIQVSPMDCTGCNLCAETCPAKDKALVMKPFEEVA 772



 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 5/80 (6%)

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV--EGPNFEFATETRQ 132
           + A    +      G    V   I    C  C  C   CP  AI        E   E+  
Sbjct: 665 SGAYPPGTAAYEKRGIALEVPEWI-SENCTMCNECAFVCPHAAIRPILTDEEEM--ESAP 721

Query: 133 ELYYDKERLLNNGDRWESEI 152
           E +  +E    +G R+  ++
Sbjct: 722 EGFMTREMRGKDGLRYRIQV 741


>gi|254823903|ref|ZP_05228904.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria
           monocytogenes FSL J1-194]
 gi|293593129|gb|EFG00890.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria
           monocytogenes FSL J1-194]
          Length = 1215

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 34/104 (32%), Gaps = 16/104 (15%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCH 87
              T+   +   AL       E C  C  C  +CP  AI              E      
Sbjct: 669 PPGTAAYEKRGIALEVPEWISENCTMCNECAFVCPHAAIRPILTDEEEMESAPEGFMTRE 728

Query: 88  DGTRRTVRYDID--MIKCIYCGLCQEACPV--DAIVEGPNFEFA 127
              +  +RY I    + C  C LC E CP    A+V  P  E A
Sbjct: 729 MRGKDGLRYRIQVSPMDCTGCNLCAETCPAKDKALVMKPFEEVA 772



 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 5/80 (6%)

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV--EGPNFEFATETRQ 132
           + A    +      G    V   I    C  C  C   CP  AI        E   E+  
Sbjct: 665 SGAYPPGTAAYEKRGIALEVPEWI-SENCTMCNECAFVCPHAAIRPILTDEEEM--ESAP 721

Query: 133 ELYYDKERLLNNGDRWESEI 152
           E +  +E    +G R+  ++
Sbjct: 722 EGFMTREMRGKDGLRYRIQV 741


>gi|238752180|ref|ZP_04613661.1| Electron transport complex protein rnfB [Yersinia rohdei ATCC
           43380]
 gi|238709551|gb|EEQ01788.1| Electron transport complex protein rnfB [Yersinia rohdei ATCC
           43380]
          Length = 207

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 25/78 (32%), Gaps = 10/78 (12%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              EE CI C  C   CP  AI   +             + +    C  C LC   CP D
Sbjct: 111 FIDEENCIGCTKCIQACPVDAIVGAT----------RAMHTVLPDLCTGCDLCVSPCPTD 160

Query: 117 AIVEGPNFEFATETRQEL 134
            I   P        + +L
Sbjct: 161 CIEMIPVATTTANWKWDL 178


>gi|226223447|ref|YP_002757554.1| pyruvate-flavodoxin oxidoreductase [Listeria monocytogenes
           Clip81459]
 gi|225875909|emb|CAS04613.1| Putative pyruvate-flavodoxin oxidoreductase [Listeria monocytogenes
           serotype 4b str. CLIP 80459]
          Length = 1215

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 34/104 (32%), Gaps = 16/104 (15%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCH 87
              T+   +   AL       E C  C  C  +CP  AI              E      
Sbjct: 669 PPGTAAYEKRGIALEVPEWISENCTMCNECAFVCPHAAIRPILTDEEEMESAPEGFMTRE 728

Query: 88  DGTRRTVRYDID--MIKCIYCGLCQEACPV--DAIVEGPNFEFA 127
              +  +RY I    + C  C LC E CP    A+V  P  E A
Sbjct: 729 MRGKDGLRYRIQVSPMDCTGCNLCAETCPAKDKALVMKPFEEVA 772



 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 5/80 (6%)

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV--EGPNFEFATETRQ 132
           + A    +      G    V   I    C  C  C   CP  AI        E   E+  
Sbjct: 665 SGAYPPGTAAYEKRGIALEVPEWI-SENCTMCNECAFVCPHAAIRPILTDEEEM--ESAP 721

Query: 133 ELYYDKERLLNNGDRWESEI 152
           E +  +E    +G R+  ++
Sbjct: 722 EGFMTREMRGKDGLRYRIQV 741


>gi|217965078|ref|YP_002350756.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Listeria
           monocytogenes HCC23]
 gi|217334348|gb|ACK40142.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Listeria
           monocytogenes HCC23]
 gi|307570362|emb|CAR83541.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria
           monocytogenes L99]
          Length = 1215

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 34/104 (32%), Gaps = 16/104 (15%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCH 87
              T+   +   AL       E C  C  C  +CP  AI              E      
Sbjct: 669 PPGTAAYEKRGIALEVPEWISENCTMCNECAFVCPHAAIRPILTDEEEMESAPEGFMTRE 728

Query: 88  DGTRRTVRYDID--MIKCIYCGLCQEACPV--DAIVEGPNFEFA 127
              +  +RY I    + C  C LC E CP    A+V  P  E A
Sbjct: 729 MRGKDGLRYRIQVSPMDCTGCNLCAETCPAKDKALVMKPFEEVA 772



 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 5/80 (6%)

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV--EGPNFEFATETRQ 132
           + A    +      G    V   I    C  C  C   CP  AI        E   E+  
Sbjct: 665 SGAYPPGTAAYEKRGIALEVPEWI-SENCTMCNECAFVCPHAAIRPILTDEEEM--ESAP 721

Query: 133 ELYYDKERLLNNGDRWESEI 152
           E +  +E    +G R+  ++
Sbjct: 722 EGFMTREMRGKDGLRYRIQV 741


>gi|254931210|ref|ZP_05264569.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria
           monocytogenes HPB2262]
 gi|293582758|gb|EFF94790.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria
           monocytogenes HPB2262]
          Length = 1215

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 34/104 (32%), Gaps = 16/104 (15%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCH 87
              T+   +   AL       E C  C  C  +CP  AI              E      
Sbjct: 669 PPGTAAYEKRGIALEVPEWISENCTMCNECAFVCPHAAIRPILTDEEEMESAPEGFMTRE 728

Query: 88  DGTRRTVRYDID--MIKCIYCGLCQEACPV--DAIVEGPNFEFA 127
              +  +RY I    + C  C LC E CP    A+V  P  E A
Sbjct: 729 MRGKDGLRYRIQVSPMDCTGCNLCAETCPAKDKALVMKPFEEVA 772



 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 5/80 (6%)

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV--EGPNFEFATETRQ 132
           + A    +      G    V   I    C  C  C   CP  AI        E   E+  
Sbjct: 665 SGAYPPGTAAYEKRGIALEVPEWI-SENCTMCNECAFVCPHAAIRPILTDEEEM--ESAP 721

Query: 133 ELYYDKERLLNNGDRWESEI 152
           E +  +E    +G R+  ++
Sbjct: 722 EGFMTREMRGKDGLRYRIQV 741


>gi|254852320|ref|ZP_05241668.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria
           monocytogenes FSL R2-503]
 gi|300765807|ref|ZP_07075782.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria
           monocytogenes FSL N1-017]
 gi|258605626|gb|EEW18234.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria
           monocytogenes FSL R2-503]
 gi|300513501|gb|EFK40573.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria
           monocytogenes FSL N1-017]
          Length = 1215

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 34/104 (32%), Gaps = 16/104 (15%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCH 87
              T+   +   AL       E C  C  C  +CP  AI              E      
Sbjct: 669 PPGTAAYEKRGIALEVPEWISENCTMCNECAFVCPHAAIRPILTDEEEMESAPEGFMTRE 728

Query: 88  DGTRRTVRYDID--MIKCIYCGLCQEACPV--DAIVEGPNFEFA 127
              +  +RY I    + C  C LC E CP    A+V  P  E A
Sbjct: 729 MRGKDGLRYRIQVSPMDCTGCNLCAETCPAKDKALVMKPFEEVA 772



 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 5/80 (6%)

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV--EGPNFEFATETRQ 132
           + A    +      G    V   I    C  C  C   CP  AI        E   E+  
Sbjct: 665 SGAYPPGTAAYEKRGIALEVPEWI-SENCTMCNECAFVCPHAAIRPILTDEEEM--ESAP 721

Query: 133 ELYYDKERLLNNGDRWESEI 152
           E +  +E    +G R+  ++
Sbjct: 722 EGFMTREMRGKDGLRYRIQV 741


>gi|160902189|ref|YP_001567770.1| hydrogenase, Fe-only [Petrotoga mobilis SJ95]
 gi|160359833|gb|ABX31447.1| hydrogenase, Fe-only [Petrotoga mobilis SJ95]
          Length = 578

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 59  GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115
              +CI C+ CE +C   Q + + S      G      +D+ + +  C +CG C   CP 
Sbjct: 146 DPNKCIMCRRCETMCNEFQTVGVLSAIDRGFGAVVKPSFDMPLEETACTFCGQCVAVCPT 205

Query: 116 DAIVE 120
            A+VE
Sbjct: 206 GALVE 210


>gi|146302966|ref|YP_001190282.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Metallosphaera sedula DSM 5348]
 gi|145701216|gb|ABP94358.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Metallosphaera sedula DSM 5348]
          Length = 109

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 26/89 (29%), Gaps = 2/89 (2%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93
           +  P +                     + C+A   C   CP         P      ++ 
Sbjct: 22  VYAPADPPPVPKEKALGIHGTIVGVDFDLCLADGSCINACPVNVFQWYDTPGHPASEKKA 81

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
               ++   CI+C  C   CPV AI   P
Sbjct: 82  DP--VNEQACIFCMACVNVCPVAAIDVKP 108


>gi|46907060|ref|YP_013449.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|46880326|gb|AAT03626.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria
           monocytogenes serotype 4b str. F2365]
          Length = 1215

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 34/104 (32%), Gaps = 16/104 (15%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCH 87
              T+   +   AL       E C  C  C  +CP  AI              E      
Sbjct: 669 PPGTAAYEKRGIALEVPEWISENCTMCNECAFVCPHAAIRPILTDEEEMESAPEGFMTRE 728

Query: 88  DGTRRTVRYDID--MIKCIYCGLCQEACPV--DAIVEGPNFEFA 127
              +  +RY I    + C  C LC E CP    A+V  P  E A
Sbjct: 729 MRGKDGLRYRIQVSPMDCTGCNLCAETCPAKDKALVMKPFEEVA 772



 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 5/80 (6%)

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV--EGPNFEFATETRQ 132
           + A    +      G    V   I    C  C  C   CP  AI        E   E+  
Sbjct: 665 SGAYPPGTAAYEKRGIALEVPEWI-SENCTMCNECAFVCPHAAIRPILTDEEEM--ESAP 721

Query: 133 ELYYDKERLLNNGDRWESEI 152
           E +  +E    +G R+  ++
Sbjct: 722 EGFMTREMRGKDGLRYRIQV 741


>gi|39995453|ref|NP_951404.1| NADH dehydrogenase I subunit G [Geobacter sulfurreducens PCA]
 gi|39982216|gb|AAR33677.1| NADH dehydrogenase I, G subunit, putative [Geobacter sulfurreducens
           PCA]
 gi|298504452|gb|ADI83175.1| NADH dehydrogenase I, G subunit, putative [Geobacter sulfurreducens
           KN400]
          Length = 826

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 27/90 (30%), Gaps = 4/90 (4%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
           T  +  EK +    +              RC+ C  C  IC                  +
Sbjct: 121 TNRFTDEKFNWKIDYVNPLI----ERDMNRCVHCGKCARICDEIVSFGAYSFINRGIEAK 176

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                   + C +CG C   CPV A++  P
Sbjct: 177 IGTEFDGPLNCEFCGSCVSVCPVGALISRP 206


>gi|16799898|ref|NP_470166.1| hypothetical protein lin0824 [Listeria innocua Clip11262]
 gi|16413275|emb|CAC96056.1| nifJ [Listeria innocua Clip11262]
          Length = 1216

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 34/104 (32%), Gaps = 16/104 (15%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCH 87
              T+   +   AL       E C  C  C  +CP  AI              E      
Sbjct: 669 PPGTAAYEKRGIALEVPEWISENCTMCNECAFVCPHAAIRPILTNEEEMESAPEGFMTRE 728

Query: 88  DGTRRTVRYDID--MIKCIYCGLCQEACPV--DAIVEGPNFEFA 127
              +  +RY I    + C  C LC E CP    A+V  P  E A
Sbjct: 729 MRGKDGLRYRIQVSPMDCTGCNLCAETCPAKDKALVMKPFEEVA 772



 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 5/80 (6%)

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV--EGPNFEFATETRQ 132
           + A    +      G    V   I    C  C  C   CP  AI        E   E+  
Sbjct: 665 SGAYPPGTAAYEKRGIALEVPEWI-SENCTMCNECAFVCPHAAIRPILTNEEEM--ESAP 721

Query: 133 ELYYDKERLLNNGDRWESEI 152
           E +  +E    +G R+  ++
Sbjct: 722 EGFMTREMRGKDGLRYRIQV 741


>gi|16802871|ref|NP_464356.1| hypothetical protein lmo0829 [Listeria monocytogenes EGD-e]
 gi|224503202|ref|ZP_03671509.1| hypothetical protein LmonFR_11888 [Listeria monocytogenes FSL
           R2-561]
 gi|284801159|ref|YP_003413024.1| hypothetical protein LM5578_0908 [Listeria monocytogenes 08-5578]
 gi|284994301|ref|YP_003416069.1| hypothetical protein LM5923_0863 [Listeria monocytogenes 08-5923]
 gi|16410218|emb|CAC98907.1| nifJ [Listeria monocytogenes EGD-e]
 gi|284056721|gb|ADB67662.1| hypothetical protein LM5578_0908 [Listeria monocytogenes 08-5578]
 gi|284059768|gb|ADB70707.1| hypothetical protein LM5923_0863 [Listeria monocytogenes 08-5923]
          Length = 1215

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 34/104 (32%), Gaps = 16/104 (15%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCH 87
              T+   +   AL       E C  C  C  +CP  AI              E      
Sbjct: 669 PPGTAAYEKRGIALEVPEWISENCTMCNECAFVCPHAAIRPILTDEEEMESAPEGFMTRE 728

Query: 88  DGTRRTVRYDID--MIKCIYCGLCQEACPV--DAIVEGPNFEFA 127
              +  +RY I    + C  C LC E CP    A+V  P  E A
Sbjct: 729 MRGKDGLRYRIQVSPMDCTGCNLCAETCPAKDKALVMKPFEEVA 772



 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 5/80 (6%)

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV--EGPNFEFATETRQ 132
           + A    +      G    V   I    C  C  C   CP  AI        E   E+  
Sbjct: 665 SGAYPPGTAAYEKRGIALEVPEWI-SENCTMCNECAFVCPHAAIRPILTDEEEM--ESAP 721

Query: 133 ELYYDKERLLNNGDRWESEI 152
           E +  +E    +G R+  ++
Sbjct: 722 EGFMTREMRGKDGLRYRIQV 741


>gi|323141862|ref|ZP_08076723.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT 12067]
 gi|322413609|gb|EFY04467.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT 12067]
          Length = 240

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 11/79 (13%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G   LR     +  C  C  C A CP  A+++  G              ID  KC++CG 
Sbjct: 22  GHKRLRGQLQCDGGCDGCGACAAACPVGAVSVADGKA-----------KIDYSKCVFCGR 70

Query: 109 CQEACPVDAIVEGPNFEFA 127
           C EAC   A+V   +   A
Sbjct: 71  CVEACARKALVHTNHDALA 89


>gi|268324256|emb|CBH37844.1| iron-sulfur cluster-binding protein [uncultured archaeon]
          Length = 678

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 11/72 (15%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
                 +C+ C  CE +CP +A+T +               +    +CI CGLC++ACP 
Sbjct: 534 DVIIGPKCLICNACETLCPTKALTKDKNK-----------INFVYGRCIACGLCEQACPE 582

Query: 116 DAIVEGPNFEFA 127
           +AI      +F+
Sbjct: 583 EAITLERTLDFS 594



 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 13/66 (19%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
                +CI+C LC   CP +AI  ++             Y I    C  CG C   CP  
Sbjct: 195 NIDLAKCISCGLCAGACPKEAIQYDA------------VYTIGAG-CDDCGDCVSVCPTG 241

Query: 117 AIVEGP 122
           AI    
Sbjct: 242 AIELHN 247


>gi|225569293|ref|ZP_03778318.1| hypothetical protein CLOHYLEM_05375 [Clostridium hylemonae DSM
           15053]
 gi|225162092|gb|EEG74711.1| hypothetical protein CLOHYLEM_05375 [Clostridium hylemonae DSM
           15053]
          Length = 374

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 11/63 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +E C+ C  C+ IC   A  I  G              ID+ KC+ CG C  ACP DA+
Sbjct: 192 EQEYCVGCGACQRICAHDAPVITDGKAY-----------IDLHKCVGCGRCIGACPKDAV 240

Query: 119 VEG 121
              
Sbjct: 241 HPT 243


>gi|222150971|ref|YP_002560124.1| formate dehydrogenase alpha subunit [Macrococcus caseolyticus
           JCSC5402]
 gi|222120093|dbj|BAH17428.1| formate dehydrogenase alpha subunit [Macrococcus caseolyticus
           JCSC5402]
          Length = 988

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 5/72 (6%)

Query: 54  RRYPNGEERCIACKLCEAICPAQA-----ITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           + Y    ++CI C  C   C         +      R           +ID   C+ CG 
Sbjct: 142 KFYRYDPDQCILCGRCVQACQNVQVNETLMIDWELERPRVIWDGNTDLNIDDSSCVNCGH 201

Query: 109 CQEACPVDAIVE 120
           C   CP +A++E
Sbjct: 202 CSTVCPCNAMME 213



 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 24/68 (35%), Gaps = 8/68 (11%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQA--ITIESGPRCHDGTRRT--VRYDIDMIKCIY 105
           R   N E  C  C      C      +   I  ++  +   G  +     Y  D  +CI 
Sbjct: 94  RILRNHELYCTVCDFNNGNCTVHNTVKNLKIDHQATAQSPKGAPKNMGKFYRYDPDQCIL 153

Query: 106 CGLCQEAC 113
           CG C +AC
Sbjct: 154 CGRCVQAC 161


>gi|219852096|ref|YP_002466528.1| nitroreductase [Methanosphaerula palustris E1-9c]
 gi|219546355|gb|ACL16805.1| nitroreductase [Methanosphaerula palustris E1-9c]
          Length = 295

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 26/83 (31%), Gaps = 12/83 (14%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           K       +G  A        E+C  C  C  +C        +GP            +I 
Sbjct: 11  KKPGRDDTKGRRAGFTIHVDNEKCTRCGSCTEVCRGVLGMGNNGP------------EIV 58

Query: 100 MIKCIYCGLCQEACPVDAIVEGP 122
              CI CG C   CPV A+    
Sbjct: 59  SPSCIRCGQCVAVCPVGALDHSN 81


>gi|73669121|ref|YP_305136.1| flavoprotein [Methanosarcina barkeri str. Fusaro]
 gi|72396283|gb|AAZ70556.1| archaeal flavoprotein [Methanosarcina barkeri str. Fusaro]
          Length = 239

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 8/69 (11%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
             Y    ++C  C+ C           E+ P      +      ID++KC  CG+C+E C
Sbjct: 144 MPYNIDRKQCRHCEDC--------PPRENCPHGAITEKNGFTDQIDLLKCKGCGICKELC 195

Query: 114 PVDAIVEGP 122
           P  AI  GP
Sbjct: 196 PYKAIKGGP 204


>gi|298376411|ref|ZP_06986366.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 3_1_19]
 gi|298266289|gb|EFI07947.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 3_1_19]
          Length = 286

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 27/77 (35%), Gaps = 11/77 (14%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                 +E CI C  C  +CP+   T E         R           CI CG C + C
Sbjct: 1   MTLNIDQESCIKCGKCVRVCPSDIFTQERAGETIGLVRV--------ESCIVCGHCVDVC 52

Query: 114 PVDAIVEGPNFEFATET 130
           P  +++     EF  E 
Sbjct: 53  PTGSVLHS---EFPPEK 66


>gi|289450795|ref|YP_003474421.1| 4Fe-4S binding domain-containing protein [Clostridiales genomosp.
           BVAB3 str. UPII9-5]
 gi|289185342|gb|ADC91767.1| 4Fe-4S binding domain protein [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
          Length = 314

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 32/92 (34%), Gaps = 19/92 (20%)

Query: 34  INYPFEKGSTS----PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
           I  PF K          F    ++ +Y   E +CI C  C  +C  Q             
Sbjct: 209 IYRPFCKYVCPLGAMYSFFNPISIFKYRLDEAKCINCGACARVCKMQCN----------- 257

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
                  + + ++CI C  C + CP  AI  G
Sbjct: 258 ----PVQNCNALECIRCAQCVKVCPTGAISNG 285


>gi|271500635|ref|YP_003333660.1| RnfABCDGE type electron transport complex subunit B [Dickeya
           dadantii Ech586]
 gi|270344190|gb|ACZ76955.1| electron transport complex, RnfABCDGE type, B subunit [Dickeya
           dadantii Ech586]
          Length = 196

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 24/84 (28%), Gaps = 10/84 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E          +   +     E  CI C  C   CP  AI   +             + +
Sbjct: 92  EPQPLDADTPQKPEPQVAWIDEANCIGCTKCIQACPVDAIIGST----------RAVHTV 141

Query: 99  DMIKCIYCGLCQEACPVDAIVEGP 122
               C  C LC   CP D I   P
Sbjct: 142 IRDLCTGCNLCVAPCPTDCIDLRP 165


>gi|261367343|ref|ZP_05980226.1| Fe-hydrogenase large subunit family protein [Subdoligranulum
           variabile DSM 15176]
 gi|282570103|gb|EFB75638.1| Fe-hydrogenase large subunit family protein [Subdoligranulum
           variabile DSM 15176]
          Length = 507

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 26/68 (38%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQ 110
              +  C+ C  C   CP  AI     P             +  R DID  KC+ CG+C 
Sbjct: 148 HIDQSLCVKCGRCVNSCPYSAIVKTERPCAAACGMGAIHSDQYGRADIDYDKCVSCGMCL 207

Query: 111 EACPVDAI 118
             CP  AI
Sbjct: 208 VNCPFGAI 215



 Score = 39.7 bits (91), Expect = 0.12,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 5/64 (7%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-----DIDMIKCIYCGLCQEACPVDA 117
           C  C        A      + P      +  + +      ID   C+ CG C  +CP  A
Sbjct: 109 CNRCPEKIIKVTAMCQGCLAHPCQEVCPKHAISFRNGKSHIDQSLCVKCGRCVNSCPYSA 168

Query: 118 IVEG 121
           IV+ 
Sbjct: 169 IVKT 172


>gi|225376805|ref|ZP_03754026.1| hypothetical protein ROSEINA2194_02447 [Roseburia inulinivorans DSM
           16841]
 gi|225211301|gb|EEG93655.1| hypothetical protein ROSEINA2194_02447 [Roseburia inulinivorans DSM
           16841]
          Length = 375

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 21/56 (37%), Gaps = 11/56 (19%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           CI C  C  IC   A  I                 ID  KC+ CG C   CP DAI
Sbjct: 196 CIGCGACGRICAHGAPVITDHKA-----------KIDHDKCVGCGRCLAVCPKDAI 240


>gi|187776781|ref|ZP_02993254.1| hypothetical protein CLOSPO_00297 [Clostridium sporogenes ATCC
           15579]
 gi|187775440|gb|EDU39242.1| hypothetical protein CLOSPO_00297 [Clostridium sporogenes ATCC
           15579]
          Length = 497

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 7/69 (10%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIKCIYCGLC 109
              + +C  C LC+ +CP  AI     P                 R  I+   CI CG C
Sbjct: 135 YIDQNKCRECGLCKKVCPYNAIVEVMRPCKRVCPTGALEINPDDKRAMIEKENCINCGAC 194

Query: 110 QEACPVDAI 118
             ACP  AI
Sbjct: 195 MGACPFGAI 203


>gi|91202378|emb|CAJ72017.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 396

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 11/62 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C  C  C   CPA A++ ++G             ++D  KCI C  C E C   AI
Sbjct: 324 NHSNCTRCYECVRNCPAGAMSKDTGKV-----------EVDKKKCIGCFCCDEVCDFHAI 372

Query: 119 VE 120
             
Sbjct: 373 EM 374


>gi|15920962|ref|NP_376631.1| indolepyruvate oxidoreductase subunit A [Sulfolobus tokodaii str.
           7]
 gi|15621746|dbj|BAB65740.1| 598aa long hypothetical indolepyruvate oxidoreductase subunit A
           [Sulfolobus tokodaii str. 7]
          Length = 598

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 22/72 (30%), Gaps = 10/72 (13%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            L        +C  C +C       AI      +            ID + CI CG C  
Sbjct: 526 ELPIAEVDINKCTGCTICYDYFTCPAIIPREDKKA----------IIDPVLCIGCGACIP 575

Query: 112 ACPVDAIVEGPN 123
            CP +AI     
Sbjct: 576 ICPYNAISLKGE 587


>gi|308273888|emb|CBX30488.1| hypothetical protein N47_K27280 [uncultured Desulfobacterium sp.]
          Length = 343

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 11/64 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            + +CI C +CE +C   AI +                DI   KC  CG+C  +C   A+
Sbjct: 281 DQGKCICCGVCEEVCNWGAIKVIDD-----------TVDIVKEKCEGCGVCVCSCTEGAL 329

Query: 119 VEGP 122
               
Sbjct: 330 WLDN 333



 Score = 33.9 bits (76), Expect = 6.9,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 21/45 (46%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           T +     +  T+  +   +D  KCI CG+C+E C   AI    +
Sbjct: 261 TFDEAIVTYGKTKGKIVVSVDQGKCICCGVCEEVCNWGAIKVIDD 305


>gi|289756971|ref|ZP_06516349.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           T85]
 gi|289712535|gb|EFD76547.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis
           T85]
          Length = 179

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 3/64 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + C     C   CP   I          G   +    ID + C+ CG C  ACP
Sbjct: 1   MPHVITQSCCNDASCVFACPVNCIHPTPDE---PGFATSEMLYIDPVACVDCGACVTACP 57

Query: 115 VDAI 118
           V AI
Sbjct: 58  VSAI 61


>gi|262381260|ref|ZP_06074398.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|262296437|gb|EEY84367.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
          Length = 286

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 27/77 (35%), Gaps = 11/77 (14%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                 +E CI C  C  +CP+   T E         R           CI CG C + C
Sbjct: 1   MTLNIDQESCIKCGKCVRVCPSDIFTQERAGETIGLVRV--------ESCIVCGHCVDVC 52

Query: 114 PVDAIVEGPNFEFATET 130
           P  +++     EF  E 
Sbjct: 53  PTGSVLHS---EFPPEK 66


>gi|317047962|ref|YP_004115610.1| electron transport complex, RnfABCDGE type subunit B [Pantoea sp.
           At-9b]
 gi|316949579|gb|ADU69054.1| electron transport complex, RnfABCDGE type, B subunit [Pantoea sp.
           At-9b]
          Length = 192

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 24/84 (28%), Gaps = 10/84 (11%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
                    E  CI C  C   CP  AI   +             + +    C  C LC 
Sbjct: 105 PVRTVAWIDEANCIGCTKCIQACPVDAIVGAT----------RAMHTVLSDVCTGCDLCV 154

Query: 111 EACPVDAIVEGPNFEFATETRQEL 134
             CP D I   P        + +L
Sbjct: 155 APCPTDCIEMRPVATTTANWKWDL 178


>gi|218134605|ref|ZP_03463409.1| hypothetical protein BACPEC_02508 [Bacteroides pectinophilus ATCC
           43243]
 gi|217989990|gb|EEC56001.1| hypothetical protein BACPEC_02508 [Bacteroides pectinophilus ATCC
           43243]
          Length = 218

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            +  + CI C  C   CP   I+        +       + I    C++CG C E CPV 
Sbjct: 156 YHITDACIGCGTCVQHCPQSCISCVEDAETGN-----THFSIRQEHCLHCGACYEHCPVG 210

Query: 117 AI 118
           A+
Sbjct: 211 AV 212



 Score = 33.9 bits (76), Expect = 8.3,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 27/92 (29%), Gaps = 8/92 (8%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI-CPAQAITIES---GPRCHDGTRRT 93
            E+   +  + G+        G   CI     E      + I  E+   G          
Sbjct: 97  EEQPYLANVYPGDTR----DIGIIFCIDEGEVEYFNLGVKPIFRETYRLGKLTETAKTGN 152

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
            +       CI CG C + CP   I    + E
Sbjct: 153 HKGYHITDACIGCGTCVQHCPQSCISCVEDAE 184


>gi|218782988|ref|YP_002434306.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218764372|gb|ACL06838.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 378

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 10/74 (13%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
             A        E+C++C  C   C  QA+T                  ++   CI CG+C
Sbjct: 303 NEAWFMAVVDTEKCVSCGTCAEKCGTQAMTQGEDGSPS----------LNKDLCIGCGVC 352

Query: 110 QEACPVDAIVEGPN 123
              CP +AI    N
Sbjct: 353 AHFCPENAISLVQN 366


>gi|110681349|ref|YP_684356.1| formate dehydrogenase, alpha subunit [Roseobacter denitrificans OCh
           114]
 gi|109457465|gb|ABG33670.1| formate dehydrogenase, alpha subunit [Roseobacter denitrificans OCh
           114]
          Length = 925

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 5/67 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114
             + CI C LC   C       +       G      +D    +    C+ CG C +ACP
Sbjct: 147 NLDACIQCGLCVRACR-DVQVNDVIGMAGRGHDAYPTFDFADPMGESTCVACGECVQACP 205

Query: 115 VDAIVEG 121
             A++  
Sbjct: 206 TGALMPS 212


>gi|54298873|ref|YP_125242.1| hypothetical protein lpp2940 [Legionella pneumophila str. Paris]
 gi|53752658|emb|CAH14093.1| hypothetical protein lpp2940 [Legionella pneumophila str. Paris]
          Length = 204

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 13/93 (13%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C   CP  AI   S           + + I   +C  CGLC + CPVD I  
Sbjct: 82  DECIGCTKCIKACPVDAIIGSSK----------LMHAIIAHECTGCGLCVDPCPVDCIEM 131

Query: 121 GPNFEFATETRQ--ELYYDKERLLNNGDRWESE 151
                 A   +      Y+ +++    D  E +
Sbjct: 132 VS-LPAAGYDKDLARQRYNAKQMRQLRDEHEKQ 163



 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 17/35 (48%)

Query: 84  PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               D TR      I   +CI C  C +ACPVDAI
Sbjct: 65  KEAIDNTRPPSVAAIKEDECIGCTKCIKACPVDAI 99


>gi|51894302|ref|YP_076993.1| pyruvate flavodoxin dehydrogenase [Symbiobacterium thermophilum IAM
           14863]
 gi|51857991|dbj|BAD42149.1| pyruvate flavodoxin dehydrogenase [Symbiobacterium thermophilum IAM
           14863]
          Length = 1183

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 28/107 (26%), Gaps = 24/107 (22%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPR 85
             +T+   +    L       + CI C  C  +CP                A        
Sbjct: 669 PTATTQWEKRSIGLEVPVWDPDVCIQCGKCVLVCPHAVIRAKVADEADLASAPEGFKHMP 728

Query: 86  CHDGTRRTVRYDID--MIKCIYCGLCQEACPV--------DAIVEGP 122
                    RY I   +  C  C LC EACP          AI    
Sbjct: 729 ARFRELPGKRYTIQVSIEDCTGCALCVEACPAKSKQDPSHKAINMTD 775


>gi|238796520|ref|ZP_04640028.1| Electron transport complex protein rnfB [Yersinia mollaretii ATCC
           43969]
 gi|238719725|gb|EEQ11533.1| Electron transport complex protein rnfB [Yersinia mollaretii ATCC
           43969]
          Length = 207

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 24/78 (30%), Gaps = 10/78 (12%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C  C   CP  AI   +             + +    C  C LC   CP D
Sbjct: 111 FIDEANCIGCTKCIQACPVDAIVGAT----------RAMHTVLPDLCTGCDLCVAPCPTD 160

Query: 117 AIVEGPNFEFATETRQEL 134
            I   P        + +L
Sbjct: 161 CIEMIPVATTTANWKWDL 178


>gi|291483725|dbj|BAI84800.1| hypothetical protein BSNT_02062 [Bacillus subtilis subsp. natto
           BEST195]
          Length = 490

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 9/101 (8%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            ++         + PF+       +  + +   Y    ++CI C  C   C    +T   
Sbjct: 114 TVKEM--KINHQSIPFDHKP----YHKDESHPFYRYDPDQCILCGRCVEACQDVQVTETL 167

Query: 83  GPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPVDAIVE 120
                    R +  +   I+   C+ CG C   CP +A++E
Sbjct: 168 TIDWERKRPRVIWDNDVPINESSCVSCGHCSTVCPCNAMME 208



 Score = 38.2 bits (87), Expect = 0.40,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 21/66 (31%), Gaps = 9/66 (13%)

Query: 57  PNGEERCIAC----KLCEAICPA-----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
            N E  C  C      CE             +I    + +        Y  D  +CI CG
Sbjct: 93  YNHELYCTVCDYNNGGCEIHNTVKEMKINHQSIPFDHKPYHKDESHPFYRYDPDQCILCG 152

Query: 108 LCQEAC 113
            C EAC
Sbjct: 153 RCVEAC 158


>gi|221640575|ref|YP_002526837.1| Formate dehydrogenase subunit alpha [Rhodobacter sphaeroides KD131]
 gi|221161356|gb|ACM02336.1| Formate dehydrogenase, alpha subunit [Rhodobacter sphaeroides
           KD131]
          Length = 960

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 29/92 (31%), Gaps = 4/92 (4%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDID 99
                 + +   +     +CI C  C   C       A+TIE        +         
Sbjct: 162 PKWMAKDESNPYFTYDPSKCIVCSRCVRACEEVQGTFALTIEGRGFDSRVSAGMASDSFL 221

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
              C+ CG C +ACP   + E    E  T  R
Sbjct: 222 TSDCVSCGACVQACPTATLQEKSMIEIGTPER 253


>gi|21228736|ref|NP_634658.1| putative pyruvate:ferredoxin oxidoreductase [Methanosarcina mazei
           Go1]
 gi|20907247|gb|AAM32330.1| putative pyruvate:ferredoxin oxidoreductase [Methanosarcina mazei
           Go1]
          Length = 623

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 15/87 (17%)

Query: 40  KGSTSPRFRGEHA-----LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
           KG ++  F+G+       + R+    E C  C LC       A+ + +G           
Sbjct: 543 KGPSAVVFKGKCVGITKPVIRFEIDTESCTGCGLCVKQLGCPALFLPAGEEKP------- 595

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEG 121
              +    C  CGLC + CP  AI+E 
Sbjct: 596 ---VIQDSCSGCGLCAQVCPSGAIIET 619


>gi|54309722|ref|YP_130742.1| electron transport complex protein RnfB [Photobacterium profundum
           SS9]
 gi|46914160|emb|CAG20940.1| Putative RnfB-related protein [Photobacterium profundum SS9]
          Length = 192

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 10/78 (12%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E+ CI C  C   CP  AI   +             + +   +C  C LC   CP D
Sbjct: 107 FIHEDMCIGCTKCIQACPVDAIVGGTK----------SMHTVIKDECTGCDLCVAPCPTD 156

Query: 117 AIVEGPNFEFATETRQEL 134
            I   P  +     + +L
Sbjct: 157 CIEMIPVKDTPESWKWDL 174


>gi|116750125|ref|YP_846812.1| RnfABCDGE type electron transport complex subunit C
           [Syntrophobacter fumaroxidans MPOB]
 gi|116699189|gb|ABK18377.1| electron transport complex, RnfABCDGE type, C subunit
           [Syntrophobacter fumaroxidans MPOB]
          Length = 440

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 32/112 (28%), Gaps = 13/112 (11%)

Query: 13  LKEFVGAFFLCLRYFFKAKT----------TINYPFEKGSTSPRFRGEHALRRYPNGEER 62
           L + V      +    +             T + P  K ++   F  +  +         
Sbjct: 314 LSDIVTFLGGTMDNLARIVVGGPMMGFSIPTTDLPVMKTTSGVLFLSDDEI--DSRPHGP 371

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           CI C  C  +C       E G     G  R       + +C  CG C   CP
Sbjct: 372 CIRCGKCVEVCSMGLSPNEVGIYVEAGRARDTA-QFGVFECFECGACAFVCP 422


>gi|330877327|gb|EGH11476.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 291

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 10/74 (13%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           RGE   +     E  CI C  C   CP  AI   +           + + + + +C  C 
Sbjct: 76  RGEAPAQVAFIREAECIGCTKCIQACPVDAILGAAK----------LMHTVIIDECTGCD 125

Query: 108 LCQEACPVDAIVEG 121
           LC   CPVD I   
Sbjct: 126 LCVAPCPVDCIEMH 139


>gi|325497183|gb|EGC95042.1| electron transport complex protein RnfC [Escherichia fergusonii
           ECD227]
          Length = 726

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 35/112 (31%), Gaps = 9/112 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G         ++  CI CG C   CP  
Sbjct: 371 PQEEQGCIRCSSCADACPAD-LLPQQLYWFSKGQLHDKATAHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQELYY--DKERLLNNGDRWESEIVRNIVTDSP 161
            I     F     E A   ++E      K R      R E E    +     
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEERRAAEAKARFEARQARLEREKAARLERHKK 480


>gi|324113403|gb|EGC07378.1| electron transporter [Escherichia fergusonii B253]
          Length = 627

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 35/112 (31%), Gaps = 9/112 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G         ++  CI CG C   CP  
Sbjct: 371 PQEEQGCIRCSSCADACPAD-LLPQQLYWFSKGQLHDKATAHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQELYY--DKERLLNNGDRWESEIVRNIVTDSP 161
            I     F     E A   ++E      K R      R E E    +     
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEERRAAEAKARFEARQARLEREKAARLERHKK 480


>gi|323703766|ref|ZP_08115405.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfotomaculum nigrificans DSM 574]
 gi|323531290|gb|EGB21190.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfotomaculum nigrificans DSM 574]
          Length = 368

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 10/60 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E+C  C+ C   CPA AI++    +            I    C+ CG C  +CP  AI
Sbjct: 191 DLEKCTGCRKCHQWCPAGAISMGEDKKSF----------IAAELCMGCGECTVSCPFGAI 240



 Score = 37.0 bits (84), Expect = 0.97,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 16/37 (43%)

Query: 87  HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                  V+  ID+ KC  C  C + CP  AI  G +
Sbjct: 179 KQMMHSDVKPAIDLEKCTGCRKCHQWCPAGAISMGED 215


>gi|313157389|gb|EFR56812.1| 4Fe-4S binding domain protein [Alistipes sp. HGB5]
          Length = 290

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 22/64 (34%), Gaps = 8/64 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +  CI C  C  +CP+Q    E         +           CI CG C  ACP  A+
Sbjct: 9   NDAICIRCGRCVKVCPSQIFVQEKAGAAVTLHK--------PENCIVCGHCAAACPTGAV 60

Query: 119 VEGP 122
               
Sbjct: 61  EHAD 64


>gi|307297315|ref|ZP_07577121.1| iron-sulfur cluster-binding protein [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916575|gb|EFN46957.1| iron-sulfur cluster-binding protein [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 357

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/63 (42%), Positives = 33/63 (52%), Gaps = 13/63 (20%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ERC +C++CE  CPA+AI I              R+ ID  KCI C +C E CP DAI
Sbjct: 303 DRERCRSCRVCENACPAKAIDIN-------------RFAIDYNKCITCYVCHELCPEDAI 349

Query: 119 VEG 121
           V  
Sbjct: 350 VFT 352


>gi|325679199|ref|ZP_08158790.1| 4Fe-4S binding domain protein [Ruminococcus albus 8]
 gi|324109128|gb|EGC03353.1| 4Fe-4S binding domain protein [Ruminococcus albus 8]
          Length = 478

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110
              + +C+ C  C  +CP  AIT    P  +    + +  +      ID  KCI CG C 
Sbjct: 126 HIDKSKCVECGRCSKVCPYSAITNRVRPCQNACKIKAISINEDGGAAIDNEKCISCGACV 185

Query: 111 EACPVDAI 118
             CP  AI
Sbjct: 186 YQCPFGAI 193



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 12/64 (18%)

Query: 57  PNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
               + C  C    CE +CP  AI+ +     H          ID  KC+ CG C + CP
Sbjct: 94  YEVTDSCRGCLAHRCEDVCPRGAISFDHNHVAH----------IDKSKCVECGRCSKVCP 143

Query: 115 VDAI 118
             AI
Sbjct: 144 YSAI 147


>gi|163782829|ref|ZP_02177825.1| NADH dehydrogenase I chain G [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881950|gb|EDP75458.1| NADH dehydrogenase I chain G [Hydrogenivirga sp. 128-5-R1-1]
          Length = 628

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 61  ERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            RC+ C  C   C     A  +    R  D         +D   C  CG+C   CPV AI
Sbjct: 152 NRCVVCYRCTRACDEIVGAHALYVENRGFDSNIVPTVRPMDTSTCEMCGICVHVCPVGAI 211

Query: 119 VEGP 122
           +  P
Sbjct: 212 ISKP 215


>gi|91202272|emb|CAJ75332.1| similar to NAD(P) oxidoreductase, FAD-containing subunit
           [Candidatus Kuenenia stuttgartiensis]
          Length = 581

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 27/87 (31%), Gaps = 5/87 (5%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT----IESGPRCHDGTRRT 93
            E  +     R              C+ C  C  +CP  A+      +          + 
Sbjct: 481 DEFQAAREANRCLKCDLTINVETNECVLCGRCSMVCPVGALKQVDAFDQSKEHKPFMSKD 540

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVE 120
                   KCI CG C++ CPV+ I  
Sbjct: 541 GIVIKYTDKCIRCGNCKD-CPVNVISM 566



 Score = 37.4 bits (85), Expect = 0.71,   Method: Composition-based stats.
 Identities = 10/60 (16%), Positives = 26/60 (43%)

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           +        ++    +   +  +  +++  +C+ CG C   CPV A+ +   F+ + E +
Sbjct: 475 LVELGLDEFQAAREANRCLKCDLTINVETNECVLCGRCSMVCPVGALKQVDAFDQSKEHK 534


>gi|37679744|ref|NP_934353.1| quinol dehydrogenase membrane component [Vibrio vulnificus YJ016]
 gi|37198489|dbj|BAC94324.1| polyferredoxin [Vibrio vulnificus YJ016]
          Length = 284

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 23/73 (31%), Gaps = 8/73 (10%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            LR      E C  C  C  IC          P       +     +    CI CG C +
Sbjct: 214 VLRISAENREACTKCMDCYNIC--------PEPEVLRQPLKEGDRRVMDQNCISCGRCID 265

Query: 112 ACPVDAIVEGPNF 124
            CP + +V    F
Sbjct: 266 VCPENVLVFTHRF 278


>gi|150391799|ref|YP_001321848.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
 gi|149951661|gb|ABR50189.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF]
          Length = 596

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 10/58 (17%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C  C LC   CP  AI  E          R   + I+   CI CG C + CP  AI
Sbjct: 546 DDCKGCTLCVKACPVDAIHGE----------RKAVHLINTDTCIKCGACVDKCPFKAI 593



 Score = 37.4 bits (85), Expect = 0.75,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 17/40 (42%)

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
                 C  G  + +   +    C  C LC +ACPVDAI 
Sbjct: 525 HVKEKSCPAGVCQALTNYVITDDCKGCTLCVKACPVDAIH 564


>gi|331083627|ref|ZP_08332738.1| hypothetical protein HMPREF0992_01662 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330403838|gb|EGG83390.1| hypothetical protein HMPREF0992_01662 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 860

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 37/127 (29%), Gaps = 24/127 (18%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P           G    R      E+C  CK+C          +E     +       +
Sbjct: 690 CPNNCVKPDLNDLGIIGQRIPQVDMEKCRGCKIC---------RVEKNCPINVAKVVDGK 740

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRN 155
             ID   C +CG C   CP +A      FE    T     Y        G RW  ++ + 
Sbjct: 741 IVIDENSCNHCGRCIGKCPFNA------FE--DYTNGYRIY-------IGGRWGKKVAQG 785

Query: 156 IVTDSPY 162
              +  +
Sbjct: 786 RYLEKVF 792


>gi|300786460|ref|YP_003766751.1| formate dehydrogenase alpha subunit [Amycolatopsis mediterranei
           U32]
 gi|299795974|gb|ADJ46349.1| formate dehydrogenase alpha subunit [Amycolatopsis mediterranei
           U32]
          Length = 285

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 29/86 (33%), Gaps = 8/86 (9%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI----DMIKCIYCGLCQE 111
           Y     +CI C  C   C  Q     +      G    +  +         C+YCG C E
Sbjct: 145 YVRDYGKCILCYKCVDACGEQWQNSFAITVAGRGFDARISTEFSSPLPDSACVYCGNCVE 204

Query: 112 ACPVDAIVEGPNFEFATETRQELYYD 137
            CP  A+      +     R++  +D
Sbjct: 205 VCPTGALSFKRECD----KREDGTWD 226



 Score = 33.5 bits (75), Expect = 9.7,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 2/50 (4%)

Query: 63  CIACKLCEAICPAQAITIESG-PRCHDGTRRTVRYDIDMIKCIYCGL-CQ 110
           C+ C  C  +CP  A++ +    +  DGT    R       C +CG+ C 
Sbjct: 196 CVYCGNCVEVCPTGALSFKRECDKREDGTWDESRQTATTTICTFCGVGCA 245


>gi|220932451|ref|YP_002509359.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Halothermothrix orenii H 168]
 gi|219993761|gb|ACL70364.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Halothermothrix orenii H 168]
          Length = 57

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 11/66 (16%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + CI C  CE  CP  AI+                Y+ID   CI CG C E CP
Sbjct: 1   MAHVISDECIMCGACEPECPVDAISQGDNK-----------YEIDPDTCIDCGACAEVCP 49

Query: 115 VDAIVE 120
           V+AI E
Sbjct: 50  VEAISE 55


>gi|330508800|ref|YP_004385228.1| NADH:ubiquinone oxidoreductase, nadh-binding subunit [Methanosaeta
           concilii GP-6]
 gi|328929608|gb|AEB69410.1| NADH:ubiquinone oxidoreductase, nadh-binding subunit [Methanosaeta
           concilii GP-6]
          Length = 628

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 15/93 (16%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            +RY F+ +   +   ++           +L  Y    E CI C LC   CP  AI  + 
Sbjct: 534 TIRY-FREEYDAHIKDKRCPALSC----KSLVSYSIDPEICIGCDLCRENCPQGAIYKDD 588

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           G              +D  KC+ CG+C E CP 
Sbjct: 589 GGFAV----------VDQSKCMRCGICFEICPK 611



 Score = 39.3 bits (90), Expect = 0.16,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 19/44 (43%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            I+         +  V Y ID   CI C LC+E CP  AI +  
Sbjct: 545 HIKDKRCPALSCKSLVSYSIDPEICIGCDLCRENCPQGAIYKDD 588


>gi|301029281|ref|ZP_07192385.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 196-1]
 gi|299877809|gb|EFI86020.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 196-1]
          Length = 520

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 315 PQEEQSCIRCSACADACPADLLPQQLY-WFSKGQQHDKATTHNIADCIECGACAWVCP-S 372

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 373 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 421


>gi|297618249|ref|YP_003703408.1| ferredoxin [Syntrophothermus lipocalidus DSM 12680]
 gi|297146086|gb|ADI02843.1| ferredoxin [Syntrophothermus lipocalidus DSM 12680]
          Length = 247

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 25/62 (40%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           PN  ERCI C+LC   C     +  S        R    YD     CI C  C + CP  
Sbjct: 117 PNEGERCILCRLCVKACEKMGASAISAVFRGTSKRIGTPYDEASADCIGCAACAQVCPTG 176

Query: 117 AI 118
           AI
Sbjct: 177 AI 178


>gi|261343672|ref|ZP_05971317.1| electron transport complex, RnfABCDGE type, B subunit [Providencia
           rustigianii DSM 4541]
 gi|282568055|gb|EFB73590.1| electron transport complex, RnfABCDGE type, B subunit [Providencia
           rustigianii DSM 4541]
          Length = 204

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 26/76 (34%), Gaps = 10/76 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            EE CI C  C   CP  AI   +             + +    C  C LC   CP D I
Sbjct: 113 DEENCIGCTKCIQACPVDAIVGAT----------RAMHTVIEDLCTGCDLCVAPCPTDCI 162

Query: 119 VEGPNFEFATETRQEL 134
              P     T  + +L
Sbjct: 163 EMVPVKTTTTNWKWDL 178



 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +       I+      +  R+     ID   CI C  C +ACPVDAI
Sbjct: 86  AELMNVDPQPIDGDENAQNPVRKVAV--IDEENCIGCTKCIQACPVDAI 132


>gi|254284151|ref|ZP_04959119.1| electron transport complex protein RnfB [gamma proteobacterium
           NOR51-B]
 gi|219680354|gb|EED36703.1| electron transport complex protein RnfB [gamma proteobacterium
           NOR51-B]
          Length = 200

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 29/84 (34%), Gaps = 10/84 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E          E         E+ CI C  C   CP  AI   +           + + +
Sbjct: 97  EPEPLDAEHGVEKEPAVAYIREDECIGCTKCIQACPVDAILGAAK----------LMHTV 146

Query: 99  DMIKCIYCGLCQEACPVDAIVEGP 122
            + +C  C LC E CPVD I   P
Sbjct: 147 IVDECTGCDLCVEPCPVDCIDMIP 170


>gi|220935790|ref|YP_002514689.1| electron transport complex, RnfABCDGE type, B subunit
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997100|gb|ACL73702.1| electron transport complex, RnfABCDGE type, B subunit
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 186

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 10/65 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ CI C LC   CP  AI   +             + +   +C  C LC E CPVD I
Sbjct: 108 DEQVCIGCTLCIQACPVDAILGAAKQ----------MHTVIESECTGCELCIEPCPVDCI 157

Query: 119 VEGPN 123
              P 
Sbjct: 158 DMVPI 162



 Score = 37.0 bits (84), Expect = 0.83,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 17/35 (48%)

Query: 84  PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                 T+      ID   CI C LC +ACPVDAI
Sbjct: 93  KPVEGETKPPSVAIIDEQVCIGCTLCIQACPVDAI 127


>gi|163740593|ref|ZP_02147987.1| iron-sulfur cluster-binding protein [Phaeobacter gallaeciensis
           2.10]
 gi|161386451|gb|EDQ10826.1| iron-sulfur cluster-binding protein [Phaeobacter gallaeciensis
           2.10]
          Length = 629

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/119 (18%), Positives = 34/119 (28%), Gaps = 14/119 (11%)

Query: 23  CLRYFFKAKTTINYP-FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
             R   +       P  E             L    N    C  C  C ++CP+ A+   
Sbjct: 444 TRRQITRQAAKALVPTAETLPLPEGAPYGAVLVSSDN----CTLCLSCVSLCPSGALGDN 499

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140
                        +       C+ CGLC   CP DAI         ++   ++   +E 
Sbjct: 500 PD---------LPQLRFQEDACLQCGLCATICPEDAITYESRLNLTSDALSQVVLHEEE 549



 Score = 37.4 bits (85), Expect = 0.59,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 19/55 (34%), Gaps = 11/55 (20%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             C  C  ICP  AI+                  ID + C  CG C   CP  AI
Sbjct: 256 TGCTRCLDICPTGAISPAGD-----------HVSIDPMICAGCGSCASLCPSGAI 299


>gi|126465606|ref|YP_001040715.1| cobyrinic acid a,c-diamide synthase [Staphylothermus marinus F1]
 gi|126014429|gb|ABN69807.1| Cobyrinic acid a,c-diamide synthase [Staphylothermus marinus F1]
          Length = 329

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 27/78 (34%), Gaps = 12/78 (15%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           R     +E+CI C  C   CP  A+ + +             Y I+   C  C  C   C
Sbjct: 68  RYAEIVQEKCINCGECMNACPFNAVELINNK-----------YVINKWICEGCYTCSFVC 116

Query: 114 PVDAIVEGPNFEFATETR 131
           P  AI    +   A   R
Sbjct: 117 PTKAIRIIRDI-VAGYVR 133


>gi|27365991|ref|NP_761519.1| quinol dehydrogenase membrane component [Vibrio vulnificus CMCP6]
 gi|27362191|gb|AAO11046.1| Polyferredoxin NapH (periplasmic nitrate reductase) [Vibrio
           vulnificus CMCP6]
          Length = 284

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 23/73 (31%), Gaps = 8/73 (10%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            LR      E C  C  C  +C          P       +     +    CI CG C +
Sbjct: 214 VLRISAENREACTKCMDCYNVC--------PEPEVLRQPLKEGDRRVMDQNCISCGRCID 265

Query: 112 ACPVDAIVEGPNF 124
            CP + +V    F
Sbjct: 266 VCPENVLVFTHRF 278


>gi|330836087|ref|YP_004410728.1| glycyl-radical enzyme activating protein family [Spirochaeta
           coccoides DSM 17374]
 gi|329747990|gb|AEC01346.1| glycyl-radical enzyme activating protein family [Spirochaeta
           coccoides DSM 17374]
          Length = 297

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 28/79 (35%), Gaps = 12/79 (15%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           K        G        +    CI C +C   CP +A+ ++             R  ID
Sbjct: 31  KCPWCQNPEGIKQHISLWHSPSACIQCGICVETCPERALELDG------------RIHID 78

Query: 100 MIKCIYCGLCQEACPVDAI 118
              C  CG+C E CP  A+
Sbjct: 79  KKHCTGCGMCIEKCPAAAM 97



 Score = 37.8 bits (86), Expect = 0.48,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 17/45 (37%)

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
                    +  +G ++ +        CI CG+C E CP  A+  
Sbjct: 27  GCPLKCPWCQNPEGIKQHISLWHSPSACIQCGICVETCPERALEL 71


>gi|330506904|ref|YP_004383332.1| iron sulfur cluster/nucleotide binding domain-containing protein
           [Methanosaeta concilii GP-6]
 gi|328927712|gb|AEB67514.1| iron sulfur cluster/nucleotide binding domain protein [Methanosaeta
           concilii GP-6]
          Length = 284

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 15/75 (20%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R  + ++R    +E+CI C +C+  C   AI                 ++++   C  CG
Sbjct: 54  REFYGIKRAFIDKEKCIQCGICQDSCRFGAIAD---------------FEVETPLCEGCG 98

Query: 108 LCQEACPVDAIVEGP 122
           +CQ  CP DA+    
Sbjct: 99  VCQLVCPEDAVDMRD 113


>gi|327484144|gb|AEA78551.1| Iron-sulfur cluster-binding protein [Vibrio cholerae LMA3894-4]
          Length = 504

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 9/75 (12%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             C  C  C A+CP +A+                        C+ CGLC +ACP  A+  
Sbjct: 369 SDCTLCMSCVAVCPTRALHPAGDSPA---------LRFIEQDCVQCGLCVKACPEQALSA 419

Query: 121 GPNFEFATETRQELY 135
            P   +    RQ + 
Sbjct: 420 TPQLNWNKAARQGVV 434



 Score = 40.1 bits (92), Expect = 0.094,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 12/80 (15%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           C+ C   CPA A++ E   +         R  I+   C   G C  ACP +AI       
Sbjct: 137 CERCVDACPAGALSSEGSDQTGH------RIQINPYLCQGVGTCATACPTEAIH------ 184

Query: 126 FATETRQELYYDKERLLNNG 145
           +A     +     ERLL N 
Sbjct: 185 YALPNPTDTQKFIERLLANY 204



 Score = 33.5 bits (75), Expect = 9.7,   Method: Composition-based stats.
 Identities = 6/23 (26%), Positives = 8/23 (34%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIV 119
           +     C  C  C   CP  A+ 
Sbjct: 365 ECQASDCTLCMSCVAVCPTRALH 387


>gi|325528986|gb|EGD06007.1| ferredoxin [Burkholderia sp. TJI49]
          Length = 167

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 22/66 (33%), Gaps = 10/66 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C LC   CP  AI                 + I    C  C LC   CPVD
Sbjct: 81  FIDESLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVESLCTGCDLCVPPCPVD 130

Query: 117 AIVEGP 122
            I   P
Sbjct: 131 CIAMVP 136


>gi|325261753|ref|ZP_08128491.1| nitroreductase family protein fused to ferredoxin domain protein
           [Clostridium sp. D5]
 gi|324033207|gb|EGB94484.1| nitroreductase family protein fused to ferredoxin domain protein
           [Clostridium sp. D5]
          Length = 264

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 25/72 (34%), Gaps = 13/72 (18%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + CI C  C A CP  A+ I  G     G             C  CG C   CP
Sbjct: 1   MIEMNRDLCIGCGKCAADCPVGALHIIEGKAEFSGP------------CFQCGHCVAVCP 48

Query: 115 VDAIVEGPNFEF 126
           V A+   P +E 
Sbjct: 49  VRAVAI-PEYEM 59


>gi|312883748|ref|ZP_07743468.1| electron transport complex protein RnfB [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309368598|gb|EFP96130.1| electron transport complex protein RnfB [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 196

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 25/79 (31%), Gaps = 10/79 (12%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103
           S    G          E+ CI C  C   CP  AI   +             + +   +C
Sbjct: 95  SAHDLGNEVKTVAFIHEDMCIGCTKCIQACPVDAIVGGTK----------ALHTVIKDEC 144

Query: 104 IYCGLCQEACPVDAIVEGP 122
             C LC   CP D I   P
Sbjct: 145 TGCDLCVAPCPTDCIEMIP 163


>gi|288560652|ref|YP_003424138.1| energy-converting hydrogenase A subunit Q EhaQ [Methanobrevibacter
           ruminantium M1]
 gi|288543362|gb|ADC47246.1| energy-converting hydrogenase A subunit Q EhaQ [Methanobrevibacter
           ruminantium M1]
          Length = 483

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/105 (24%), Positives = 38/105 (36%), Gaps = 6/105 (5%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P++                    ++ C AC  C   C + AI ++S             
Sbjct: 67  CPYDAIHIKKTLSEPIRENVPNINKKLCRACGACVNACKSGAIHLKSTGGEEM------H 120

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140
            +ID  KCI CG C  ACP DAI  G       +  + L  D ++
Sbjct: 121 SEIDENKCIRCGYCFRACPTDAIKYGEILPKTVKEGKTLCIDHDQ 165



 Score = 38.9 bits (89), Expect = 0.20,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 10/79 (12%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E CI+C LC  +CP ++I+++        T            C+YCGLC EAC  +AI  
Sbjct: 346 ENCISCGLCMDVCPTKSISLDGPNPIKIDT---------DNSCVYCGLCAEACNFEAIKL 396

Query: 121 GPNFEFATETRQELYYDKE 139
              F F     +  +  ++
Sbjct: 397 AEEF-FTNRNHEIFFIKRD 414



 Score = 38.2 bits (87), Expect = 0.38,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 23/69 (33%), Gaps = 8/69 (11%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               ++CI C  C  ICP+            +  +      ID   C  C  C  ACP  
Sbjct: 160 CIDHDQCIGCMTCTRICPS--------KGAINVGKTNKLPFIDPAYCARCEECMHACPTY 211

Query: 117 AIVEGPNFE 125
           AI      E
Sbjct: 212 AIDYVEREE 220



 Score = 37.4 bits (85), Expect = 0.68,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 13/89 (14%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGT-----------RRTVRYDIDMIKCIYC 106
           + +  C+ C LC   C  +AI +      +              RR    +I+   C  C
Sbjct: 374 DTDNSCVYCGLCAEACNFEAIKLAEEFFTNRNHEIFFIKRDLRGRRNGTVEINHSACQLC 433

Query: 107 GLCQEACPVDAIVEGPNFEFATETRQELY 135
            +C + CPVDA       +  T    E  
Sbjct: 434 EVCIKNCPVDA--MSVEDDMITVNHDECI 460



 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 3/60 (5%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E C  C LC   CP  AI I    +      R    +I+   C  CG C  AC   AI  
Sbjct: 55  EHCFGCVLCSNACPYDAIHI---KKTLSEPIRENVPNINKKLCRACGACVNACKSGAIHL 111



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 11/68 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C  C++C   CP  A+++E                ++  +CI C  C+  CPV+A 
Sbjct: 426 NHSACQLCEVCIKNCPVDAMSVEDD-----------MITVNHDECISCRNCEGICPVNAA 474

Query: 119 VEGPNFEF 126
                ++F
Sbjct: 475 RVSTIWQF 482



 Score = 33.5 bits (75), Expect = 8.9,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 25/73 (34%), Gaps = 12/73 (16%)

Query: 52  ALRRYPNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
               Y    E+CI C  K C  +CP  A+  +   +                 C  C LC
Sbjct: 14  VHIEYEIDNEKCINCSDKPCLGVCPIDAVYQDENTKLIK----------LDEHCFGCVLC 63

Query: 110 QEACPVDAIVEGP 122
             ACP DAI    
Sbjct: 64  SNACPYDAIHIKK 76


>gi|317152497|ref|YP_004120545.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2]
 gi|316942748|gb|ADU61799.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2]
          Length = 1157

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 13/83 (15%)

Query: 59  GEERCIACKLCEAICPAQAI-------TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
              RC++C  C  +CP +         T+ +             Y +D+  C  C  C E
Sbjct: 113 DPARCVSCGKCSEVCPVRVPSEYNAGLTMRAAVHLPVPHAIPNHYVVDLENCQRCWKCHE 172

Query: 112 ACPVDAIVEGPNFEFATETRQEL 134
           ACP  AI      +F  + R++ 
Sbjct: 173 ACPTGAI------DFKFDERKDF 189



 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 9/58 (15%)

Query: 60   EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
               C  C+ C A CP  A +++             R  +D I C  CG C   CP  A
Sbjct: 1086 HSLCSLCQACVAACPYGARSLDMDA---------GRIAVDEILCQGCGACAAVCPNSA 1134



 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query: 98  IDMIKCIYCGLCQEACPVD 116
           ID  +C+ CG C E CPV 
Sbjct: 112 IDPARCVSCGKCSEVCPVR 130


>gi|257469060|ref|ZP_05633154.1| dihydroorotate dehydrogenase family protein [Fusobacterium ulcerans
           ATCC 49185]
 gi|317063306|ref|ZP_07927791.1| dihydroorotate dehydrogenase [Fusobacterium ulcerans ATCC 49185]
 gi|313688982|gb|EFS25817.1| dihydroorotate dehydrogenase [Fusobacterium ulcerans ATCC 49185]
          Length = 365

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 11/60 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ++CI C +C+ +C  +AI I                 I+  KC  CG+C   CP  A+  
Sbjct: 315 DKCIGCGICKTVCGYKAIEIVEKKAV-----------INKDKCFGCGVCVSKCPTKAMDI 363


>gi|326201103|ref|ZP_08190975.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Clostridium
           papyrosolvens DSM 2782]
 gi|325988671|gb|EGD49495.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Clostridium
           papyrosolvens DSM 2782]
          Length = 1175

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 35/114 (30%), Gaps = 28/114 (24%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE----------------SGPRC 86
           TS   +   A+       E CI C +C  +CP   I                        
Sbjct: 669 TSAYEKRGIAVNVPEWQPESCIQCNICSLVCPHAVIRPTLATEDELKAAPEAFVTKKAVG 728

Query: 87  HDGTRRTVRYDIDMIKCIYCGLCQEACPV--DAIVEG----------PNFEFAT 128
                   R  I  + C  CG C + CP    A+V            PN+++AT
Sbjct: 729 KGMEEYQFRIQISPMDCTGCGNCADVCPAKPKALVMKKLSTQTEREIPNYDYAT 782


>gi|242237505|ref|YP_002985686.1| dihydropyrimidine dehydrogenase [Dickeya dadantii Ech703]
 gi|242129562|gb|ACS83864.1| dihydroorotate dehydrogenase family protein [Dickeya dadantii
           Ech703]
          Length = 437

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 6/76 (7%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           R+   + + +    +  CI C  C   C     + ++  R  +G R    +++    C+ 
Sbjct: 329 RYLNLNHIDKAVIDQSLCIKCGRCHLACED--TSHQAITRQKNGER---HFEVKEEDCVG 383

Query: 106 CGLCQEACPV-DAIVE 120
           C LC   CPV + I  
Sbjct: 384 CNLCVSICPVENCISM 399


>gi|260587325|ref|ZP_05853238.1| pyridine nucleotide-disulfide oxidoreductase/rhodanese domain
           protein [Blautia hansenii DSM 20583]
 gi|260542192|gb|EEX22761.1| pyridine nucleotide-disulfide oxidoreductase/rhodanese domain
           protein [Blautia hansenii DSM 20583]
          Length = 879

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/127 (19%), Positives = 37/127 (29%), Gaps = 24/127 (18%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P           G    R      E+C  CK+C          +E     +       +
Sbjct: 709 CPNNCVKPDLNDLGIIGQRIPQVDMEKCRGCKIC---------RVEKNCPINVAKVVDGK 759

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRN 155
             ID   C +CG C   CP +A      FE    T     Y        G RW  ++ + 
Sbjct: 760 IVIDENSCNHCGRCIGKCPFNA------FE--DYTNGYRIY-------IGGRWGKKVAQG 804

Query: 156 IVTDSPY 162
              +  +
Sbjct: 805 RYLEKVF 811


>gi|218779472|ref|YP_002430790.1| methyl-viologen-reducing hydrogenase delta subunit
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760856|gb|ACL03322.1| Putative fusion protein, heterodisulfide reductase (HdrA)
           /F420-non-reducing hydrogenase (MvhD) [Desulfatibacillum
           alkenivorans AK-01]
          Length = 814

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 8/62 (12%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E C AC  C  +CP  AI+++   +            ++   C  CG C   CP  AI  
Sbjct: 597 EHCKACGKCAEVCPYNAISVDPKKKIPA--------VVNTAACAGCGTCGAECPFGAITM 648

Query: 121 GP 122
             
Sbjct: 649 NH 650



 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 27/81 (33%), Gaps = 16/81 (19%)

Query: 62  RCIACKLCEAICPA-------QAITIESGPRCHDGTRRTVRYDIDMIKCIY-----CGLC 109
            C AC  C  +CP          ++                Y I++ +C+      C  C
Sbjct: 257 ECTACGECAKVCPVVRPDEFNLGLSSRKAIYSPFPQAVPSSYVININECLGDNPSVCAKC 316

Query: 110 QEACPVDAIVEGPNFEFATET 130
            +AC  + I    NF  + E 
Sbjct: 317 VQACEKNCI----NFHMSDEQ 333



 Score = 35.5 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 13/26 (50%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGP 122
           ++    C  CG C E CP +AI   P
Sbjct: 593 EVITEHCKACGKCAEVCPYNAISVDP 618


>gi|209879035|ref|XP_002140958.1| pyruvate:NADP+ oxidoreductase protein [Cryptosporidium muris RN66]
 gi|209556564|gb|EEA06609.1| pyruvate:NADP+ oxidoreductase protein, putative [Cryptosporidium
           muris RN66]
          Length = 1945

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 28/89 (31%), Gaps = 17/89 (19%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQA-----------------ITIESGPRCHDGTRRT 93
            A+        +C  C  C  +CP  A                 + I       + +   
Sbjct: 724 IAISIPIVDMNKCTQCNYCSIVCPHAAIRPFLLEEVEFEEAPKSMHILRAKGGAEFSSYY 783

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            R  +  + C  C LC  ACP DA+   P
Sbjct: 784 YRIQVAPLDCTGCELCVHACPDDALHMEP 812


>gi|159042272|ref|YP_001541524.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Caldivirga maquilingensis IC-167]
 gi|157921107|gb|ABW02534.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Caldivirga maquilingensis IC-167]
          Length = 89

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 26/75 (34%), Gaps = 10/75 (13%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G   +R+     ++C  C +C   CP   I                   ID   C  CG+
Sbjct: 22  GTWRVRKPIVNLDKCTKCGICWLYCPENVIDWLEDKTVA----------IDYDYCKGCGI 71

Query: 109 CQEACPVDAIVEGPN 123
           C + CPV AI     
Sbjct: 72  CADVCPVKAITMIDE 86


>gi|119719455|ref|YP_919950.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Thermofilum pendens Hrk 5]
 gi|119524575|gb|ABL77947.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Thermofilum pendens Hrk 5]
          Length = 87

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 23/67 (34%), Gaps = 9/67 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              +C  C +C   CP   I I+   R            ID   C  CG+C   CP  AI
Sbjct: 30  DMSKCRLCGVCWLYCPDGVIEIDEDARLV---------KIDYDYCKGCGVCAAECPFKAI 80

Query: 119 VEGPNFE 125
                 E
Sbjct: 81  SMVREHE 87


>gi|118377270|ref|XP_001021815.1| Dihydroorotate dehydrogenase family protein [Tetrahymena thermophila]
 gi|89303582|gb|EAS01570.1| Dihydroorotate dehydrogenase family protein [Tetrahymena thermophila
            SB210]
          Length = 1080

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 7/80 (8%)

Query: 44   SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103
                  +  ++     ++ C+ C  C   C       +SG +            I    C
Sbjct: 977  PIEKMSKEIIQVPEISKDSCLECGRCYVACS------DSGYQAIQFDGYNNVPRIIEEDC 1030

Query: 104  IYCGLCQEACPV-DAIVEGP 122
              C +C  +CPV +AI   P
Sbjct: 1031 TGCAICVASCPVENAIKMVP 1050


>gi|332993968|gb|AEF04023.1| electron transport complex protein RnfB [Alteromonas sp. SN2]
          Length = 189

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 30/96 (31%), Gaps = 10/96 (10%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E          E   +     E+ CI C  C   CP  AI          G  + +   I
Sbjct: 90  EPKPLDAAHGEEDTKKVAFIREDECIGCTKCIQACPVDAI---------LGAAKHMHTVI 140

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134
               C  C LC + CPVD I   P        + + 
Sbjct: 141 VEE-CTGCDLCVDPCPVDCIDMVPVTPTTATWKWDF 175


>gi|330966554|gb|EGH66814.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 310

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 10/74 (13%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           RGE   +     E  CI C  C   CP  AI   +           + + + + +C  C 
Sbjct: 95  RGEAPAQVAFIREAECIGCTKCIQACPVDAILGAAK----------LMHTVIIDECTGCD 144

Query: 108 LCQEACPVDAIVEG 121
           LC   CPVD I   
Sbjct: 145 LCVAPCPVDCIEMH 158


>gi|327398331|ref|YP_004339200.1| NIL domain-containing protein [Hippea maritima DSM 10411]
 gi|327180960|gb|AEA33141.1| NIL domain-containing protein [Hippea maritima DSM 10411]
          Length = 138

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 8/65 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            EE+C  C  C A+CP QA+TI          R+T+R D+   +CI CG C + CPV A+
Sbjct: 81  NEEKCYHCGFCVAVCPTQALTIND--------RKTMRVDLYKDRCIACGYCVKVCPVKAM 132

Query: 119 VEGPN 123
                
Sbjct: 133 NLENE 137


>gi|237653485|ref|YP_002889799.1| formate dehydrogenase, subunit alpha [Thauera sp. MZ1T]
 gi|237624732|gb|ACR01422.1| formate dehydrogenase, alpha subunit [Thauera sp. MZ1T]
          Length = 949

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 33/91 (36%), Gaps = 11/91 (12%)

Query: 39  EKGSTSPRFRGEHALRRY------PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
           E        RG  A +            + CI C LC   C  +    E     H G R 
Sbjct: 151 EHMRLPAADRGPAAQQPDRTHPAIHVNLDACITCGLCVRACR-EVQVNEVIGLAHRGARA 209

Query: 93  TVRYDIDM----IKCIYCGLCQEACPVDAIV 119
            + +D D       C+ CG C +ACP  A++
Sbjct: 210 KIVFDFDDALGDSSCVACGECVQACPTGALM 240


>gi|225570977|ref|ZP_03780000.1| hypothetical protein CLOHYLEM_07081 [Clostridium hylemonae DSM
           15053]
 gi|225160439|gb|EEG73058.1| hypothetical protein CLOHYLEM_07081 [Clostridium hylemonae DSM
           15053]
          Length = 1178

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 33/110 (30%), Gaps = 19/110 (17%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQ------------AITIESGPRCHDGTRRTVR 95
           RG           E CI C  C  +CP              A   E            ++
Sbjct: 679 RGIAVDIPVWKE-ENCIQCNRCAYVCPHAVIRPVALTEDELAKAPEGTKAIDMVGMPGMK 737

Query: 96  YDIDMI--KCIYCGLCQEACP----VDAIVEGPNFEFATETRQELYYDKE 139
           + I +    C  CG C   CP      A+V        T +++   + KE
Sbjct: 738 FAITVSGYDCTGCGSCANVCPGKKGEKALVMENMEANVTVSQERFDFGKE 787


>gi|210615651|ref|ZP_03290697.1| hypothetical protein CLONEX_02915 [Clostridium nexile DSM 1787]
 gi|210150194|gb|EEA81203.1| hypothetical protein CLONEX_02915 [Clostridium nexile DSM 1787]
          Length = 263

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 11/84 (13%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P+E+         +         +  CI CK+C+ +CP+ AI +E              
Sbjct: 191 VPYEQKHLVQCSSKDKGKDVLSVCKVGCIGCKMCQKVCPSDAIVVEDNIAH--------- 241

Query: 96  YDIDMIKCIYCGLCQEACPVDAIV 119
             ID  KC  CGLC E CP   I+
Sbjct: 242 --IDPEKCTNCGLCAEKCPKKIIM 263



 Score = 37.4 bits (85), Expect = 0.60,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 5/70 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCH-----DGTRRTVRYDIDMIKCIYCGLCQEAC 113
            ++ C AC  C A CP   + +    + H        +      +  + CI C +CQ+ C
Sbjct: 169 DKDACKACGKCVAACPKHLVELVPYEQKHLVQCSSKDKGKDVLSVCKVGCIGCKMCQKVC 228

Query: 114 PVDAIVEGPN 123
           P DAIV   N
Sbjct: 229 PSDAIVVEDN 238


>gi|152981481|ref|YP_001352407.1| electron transport complex protein RnfB [Janthinobacterium sp.
           Marseille]
 gi|151281558|gb|ABR89968.1| electron transport complex protein RnfB [Janthinobacterium sp.
           Marseille]
          Length = 233

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 29/97 (29%), Gaps = 18/97 (18%)

Query: 24  LRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG 83
           L +          P    +   R R    +      E  CI C LC   CP  AI   + 
Sbjct: 61  LAHLLGKPV---IPINPVNGHERPRPVAVI-----DESLCIGCTLCIQACPVDAIVGAAK 112

Query: 84  PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
                       + I    C  C LC   CPVD I  
Sbjct: 113 Q----------MHTIVNDLCTGCDLCVAPCPVDCIAM 139


>gi|157370480|ref|YP_001478469.1| electron transport complex protein RnfB [Serratia proteamaculans
           568]
 gi|166991045|sp|A8GE01|RNFB_SERP5 RecName: Full=Electron transport complex protein rnfB
 gi|157322244|gb|ABV41341.1| electron transport complex, RnfABCDGE type, B subunit [Serratia
           proteamaculans 568]
          Length = 190

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 24/84 (28%), Gaps = 10/84 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E          E   +     E  CI C  C   CP  AI   +             + +
Sbjct: 91  EPQPLGSEAAAEPVRQVAYIDEANCIGCTKCIQACPVDAIVGAT----------RAMHTV 140

Query: 99  DMIKCIYCGLCQEACPVDAIVEGP 122
               C  C LC   CP D I   P
Sbjct: 141 ITDLCTGCDLCVAPCPTDCIEMRP 164


>gi|160881922|ref|YP_001560890.1| NADH dehydrogenase (quinone) [Clostridium phytofermentans ISDg]
 gi|160430588|gb|ABX44151.1| NADH dehydrogenase (quinone) [Clostridium phytofermentans ISDg]
          Length = 595

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 15/96 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            LRY F+ +   +   +K           +L  Y    + C  C LC   CP  AI    
Sbjct: 512 TLRY-FRDEYVAHVVDKKCPAGVC----KSLLSYTIDADMCKGCTLCARTCPNNAIEG-- 564

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                   +    + I   KCI CG C E C   AI
Sbjct: 565 --------KVREPHVIIQDKCIKCGACMEKCKFGAI 592


>gi|56460895|ref|YP_156176.1| electron transport complex protein RnfB [Idiomarina loihiensis
           L2TR]
 gi|56179905|gb|AAV82627.1| Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Idiomarina
           loihiensis L2TR]
          Length = 193

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 34/106 (32%), Gaps = 10/106 (9%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E          E   +     E+ CI C  C   CP  AI   +             + +
Sbjct: 90  EAKPLDDAHGEEDVKKVAVIREDECIGCTKCIQACPVDAILGAAKQ----------MHTV 139

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNN 144
              +C  C LC E CPVD I            + +L   KE +  N
Sbjct: 140 IEHECTGCDLCVEPCPVDCIDMVKVKARPETWQWDLDTVKENIKAN 185


>gi|119776748|ref|YP_929488.1| iron-sulfur cluster-binding protein [Shewanella amazonensis SB2B]
 gi|119769248|gb|ABM01819.1| iron-sulfur cluster-binding protein [Shewanella amazonensis SB2B]
          Length = 580

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 30/93 (32%), Gaps = 9/93 (9%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
            G     +     + C  C  C AICP  A+                        C+ CG
Sbjct: 435 MGNIPFGKVTVATDNCTLCMSCVAICPTAALKDGGDEPKLL---------FTEQNCVQCG 485

Query: 108 LCQEACPVDAIVEGPNFEFATETRQELYYDKER 140
           LC+ ACP   I   P   F   +RQ     KE 
Sbjct: 486 LCEAACPEKVISLVPQVNFDAPSRQAARVLKEE 518



 Score = 39.3 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 18/53 (33%), Gaps = 11/53 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C   CPA AI                  +ID   C   G C  ACP  AI
Sbjct: 222 CNRCLNFCPADAIQSVEKK-----------IEIDPYLCHGAGSCTNACPTGAI 263


>gi|329902902|ref|ZP_08273300.1| tungsten-containing formate dehydrogenase alpha subunit
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327548566|gb|EGF33227.1| tungsten-containing formate dehydrogenase alpha subunit
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 938

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 5/89 (5%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM----IKC 103
           R +H+        + CI C  C   C  +    +       G+   + +D+        C
Sbjct: 141 RPDHSHPAMTVNLDACIQCTRCVRACRDE-QVNDVIGLAFRGSHAEIVFDMGDPMGNSTC 199

Query: 104 IYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           + CG C +ACP  A++   +   A   +Q
Sbjct: 200 VACGECVQACPTGALMPARDAALAVPDKQ 228


>gi|316964779|gb|EFV49731.1| putative ABC transporter, ATP-binding protein [Trichinella
           spiralis]
          Length = 575

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 32/95 (33%), Gaps = 4/95 (4%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           K             R      +RC   K C  +C      +  G  C + T  +    I 
Sbjct: 3   KLPKPGHTEQSKITRIAIVNNDRCKP-KNCGQVCKKSCPVVRMGKLCIEVTPSSKIAFIS 61

Query: 100 MIKCIYCGLCQEACPVDAIVEGP---NFEFATETR 131
              CI CG+C + CP DAI       N E  T  R
Sbjct: 62  ESLCIGCGICVKKCPYDAISIINLPSNLEKHTTHR 96


>gi|304315005|ref|YP_003850152.1| conserved hypothetical protein containing a ferredoxin domain
           [Methanothermobacter marburgensis str. Marburg]
 gi|302588464|gb|ADL58839.1| conserved hypothetical protein containing a ferredoxin domain
           [Methanothermobacter marburgensis str. Marburg]
          Length = 128

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 10/71 (14%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
             A+R      E+C+ C  C ++CP  AI IE                ID  KCI C  C
Sbjct: 66  HPAMRVVKKDREKCVDCGACVSLCPVSAICIEDDWEI----------RIDDQKCIGCSFC 115

Query: 110 QEACPVDAIVE 120
             +CP  AI+ 
Sbjct: 116 VNSCPTGAIML 126



 Score = 37.4 bits (85), Expect = 0.74,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 15/37 (40%)

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
                    D  KC+ CG C   CPV AI    ++E 
Sbjct: 66  HPAMRVVKKDREKCVDCGACVSLCPVSAICIEDDWEI 102


>gi|293396260|ref|ZP_06640539.1| electron transport complex protein RnfC [Serratia odorifera DSM
           4582]
 gi|291421240|gb|EFE94490.1| electron transport complex protein RnfC [Serratia odorifera DSM
           4582]
          Length = 558

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
              E+ CI C LC   CPA  +  +       G       + ++  CI CG C   CP
Sbjct: 371 QEPEQSCIRCGLCVDACPAG-LLPQQLYWFSRGQEHDKARNHNLFDCIECGACAYVCP 427


>gi|253579944|ref|ZP_04857212.1| NADH dehydrogenase I subunit F [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848943|gb|EES76905.1| NADH dehydrogenase I subunit F [Ruminococcus sp. 5_1_39BFAA]
          Length = 625

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 26/68 (38%), Gaps = 10/68 (14%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            A+R Y    E+C  C  C   CP  AIT                  ID  KCI CG C 
Sbjct: 565 KAMRSYVIDPEKCKGCTKCARNCPVGAITGNKKEPHS----------IDTSKCIKCGTCL 614

Query: 111 EACPVDAI 118
           E C   AI
Sbjct: 615 ENCVFGAI 622



 Score = 40.1 bits (92), Expect = 0.10,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 14/40 (35%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            I          +    Y ID  KC  C  C   CPV AI
Sbjct: 553 HIVDKKCAAHVCKAMRSYVIDPEKCKGCTKCARNCPVGAI 592


>gi|150402891|ref|YP_001330185.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C7]
 gi|150033921|gb|ABR66034.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           maripaludis C7]
          Length = 395

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 1/75 (1%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ++C  C  C   CP  AI + +       +++      +   CI CG C   CP  A+  
Sbjct: 266 DKCAYCGPCALKCPTGAIKVVNPKGLELPSKKKTEKANEFAMCIRCGACAMKCPTGALKM 325

Query: 121 GP-NFEFATETRQEL 134
           G    E    TR E 
Sbjct: 326 GKVVHEGKEYTRVEF 340



 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++CI C +C   CP  AI   +G       +    + ++  +CI C  C EACP   I
Sbjct: 156 DTDKCIYCTVCSQTCPWNAIF-VAGKMPQKRQKTIKSFTVNEEECIGCEKCVEACPGSMI 214



 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 3/66 (4%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           N    CI C  C   CP  A+ +    +     +   R +     C  CG C + CP   
Sbjct: 303 NEFAMCIRCGACAMKCPTGALKM---GKVVHEGKEYTRVEFSPALCNECGECVDVCPQKT 359

Query: 118 IVEGPN 123
           +    +
Sbjct: 360 LELTGD 365



 Score = 38.9 bits (89), Expect = 0.24,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK-CIYCGLCQEACP 114
           +P  +  C+ C+ C  ICPA+ I++              +  I + K C+ CG+C   CP
Sbjct: 84  FPYSKGHCVLCEKCVDICPAEIISLPGKAEKPKKEIIIPQEPIAVTKDCVACGVCVPECP 143

Query: 115 VDAIVEGPN 123
           VDAI     
Sbjct: 144 VDAISIKDI 152



 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 1/56 (1%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C AC LC   CP +AI++E                +   KC YCG C   CP  AI
Sbjct: 229 CPACGLCVESCPVEAISLEVEYASAKPVTDEGLVWL-EDKCAYCGPCALKCPTGAI 283



 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 12/59 (20%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           + C+AC +C   CP  AI+I+                ID  KCIYC +C + CP +AI 
Sbjct: 130 KDCVACGVCVPECPVDAISIKDIAV------------IDTDKCIYCTVCSQTCPWNAIF 176



 Score = 33.9 bits (76), Expect = 7.9,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 17/78 (21%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDG-----------------TRRTVRYDIDMIK 102
            + CI C  C   CP  A+ ++ G    +G                  +   R+      
Sbjct: 31  FKTCIQCFSCANACPTGALVVKDGKLVFNGSKCDLDGACAKACPQGIKKVDDRFPYSKGH 90

Query: 103 CIYCGLCQEACPVDAIVE 120
           C+ C  C + CP + I  
Sbjct: 91  CVLCEKCVDICPAEIISL 108


>gi|150019924|ref|YP_001305278.1| cobyrinic acid a,c-diamide synthase [Thermosipho melanesiensis
           BI429]
 gi|149792445|gb|ABR29893.1| Cobyrinic acid a,c-diamide synthase [Thermosipho melanesiensis
           BI429]
          Length = 282

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 11/64 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++CI C  C   C   AI++                 +    C  CG C   CPV+AI
Sbjct: 65  DNDKCIKCGECSRACQFGAISVFPNSTV-----------VFKNLCHGCGACTMVCPVNAI 113

Query: 119 VEGP 122
            E P
Sbjct: 114 KEVP 117


>gi|160879121|ref|YP_001558089.1| nitroreductase [Clostridium phytofermentans ISDg]
 gi|160427787|gb|ABX41350.1| nitroreductase [Clostridium phytofermentans ISDg]
          Length = 273

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/107 (25%), Positives = 39/107 (36%), Gaps = 14/107 (13%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                +E+CIAC LC   CPA+ IT +                     CI CG C   CP
Sbjct: 1   MMIVNKEKCIACGLCINDCPARCITWKDNKAFVVNKI-----------CIECGHCIAICP 49

Query: 115 VDAI--VEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
             A+   E    E      +  + + E LL N  ++   I +    +
Sbjct: 50  KFAVSTEEDKMKEVIPYKEETFHIEPENLL-NFIKFRRSIRQFKDQE 95


>gi|20093899|ref|NP_613746.1| ferredoxin [Methanopyrus kandleri AV19]
 gi|19886840|gb|AAM01676.1| Ferredoxin [Methanopyrus kandleri AV19]
          Length = 379

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 10/91 (10%)

Query: 36  YPFEKGSTSPR-FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            P E         R +     +    + CI C++C  +CP  AI IE   R         
Sbjct: 214 CPTEALKRPDHRPRPKCTDEVFYIQPDMCIGCRICYDVCPVDAIRIEEITRMP------- 266

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
              I    C+ CGLC +ACP  A+   P  E
Sbjct: 267 --VIMPDLCVRCGLCADACPTSAVDRVPTEE 295



 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ERC+ C  C A CP +A+           T     + I    CI C +C + CPVDAI
Sbjct: 200 DPERCLGCYNCVAYCPTEALKRPDHRPRPKCT--DEVFYIQPDMCIGCRICYDVCPVDAI 257

Query: 119 VE 120
             
Sbjct: 258 RI 259



 Score = 38.2 bits (87), Expect = 0.40,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 3/82 (3%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
              P       +  +    + C  C  C  +CP  ++T+E         +R     ++  
Sbjct: 118 EVCPTGVMREIIEEHRIDLDACHGCLECVKVCPYGSVTVELE---VPQLKRRSNPRLNRE 174

Query: 102 KCIYCGLCQEACPVDAIVEGPN 123
            C+ C  C E CP  A    P+
Sbjct: 175 LCVECNRCHEVCPTGAADNVPD 196



 Score = 38.2 bits (87), Expect = 0.41,   Method: Composition-based stats.
 Identities = 14/83 (16%), Positives = 22/83 (26%), Gaps = 12/83 (14%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P+   +                  E C+ C  C  +CP  A                  
Sbjct: 149 CPYGSVTVELEVPQLKRRSNPRLNRELCVECNRCHEVCPTGAADNVPDGDPD-------- 200

Query: 96  YDIDMIKCIYCGLCQEACPVDAI 118
                 +C+ C  C   CP +A+
Sbjct: 201 ----PERCLGCYNCVAYCPTEAL 219



 Score = 34.7 bits (78), Expect = 4.0,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 11/19 (57%)

Query: 100 MIKCIYCGLCQEACPVDAI 118
             +C  CGLC E CP  AI
Sbjct: 26  PDECAGCGLCAEVCPTGAI 44



 Score = 33.5 bits (75), Expect = 8.7,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 12/70 (17%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
            R R            + C  C LC  +CP  AI ++   R                +C+
Sbjct: 11  DRLRNVTINIVEVERPDECAGCGLCAEVCPTGAIEVDERVRLD------------EDRCV 58

Query: 105 YCGLCQEACP 114
            C  C +ACP
Sbjct: 59  ACSFCVQACP 68


>gi|332140732|ref|YP_004426470.1| electron transport complex protein RnfC [Alteromonas macleodii str.
           'Deep ecotype']
 gi|327550754|gb|AEA97472.1| electron transport complex protein RnfC [Alteromonas macleodii str.
           'Deep ecotype']
          Length = 852

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/95 (23%), Positives = 32/95 (33%), Gaps = 2/95 (2%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
             N E  CI C  C   CPA  +  +               + D+  CI CG C   CP 
Sbjct: 376 DDNAERPCIRCSACADACPASLLPQQMFWHAKAKE-YDKAEEYDLFDCIECGACAYVCP- 433

Query: 116 DAIVEGPNFEFATETRQELYYDKERLLNNGDRWES 150
             I     +  A    +    +K +      R+E+
Sbjct: 434 SEIPLVHYYRQAKAEIRLQRDEKNKAEKAKQRFEA 468


>gi|313893000|ref|ZP_07826577.1| pyruvate synthase [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442353|gb|EFR60768.1| pyruvate synthase [Veillonella sp. oral taxon 158 str. F0412]
          Length = 1178

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/129 (22%), Positives = 42/129 (32%), Gaps = 29/129 (22%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQ------------AITIESGPRCHDGTRRTVRYDI 98
            AL       E CI C  C  +CP              A   E          + +++ I
Sbjct: 682 PALFVPKWLPENCIQCNQCSFVCPHATIRPILATEAEVAAAPEHFDTIPAMGAKDLQFRI 741

Query: 99  --DMIKCIYCGLCQEACPVD---AIVEG---PNFEFATETR-------QELYYDKERLLN 143
               + C+ CG C + CP     AIV        E A           +E   +KE L  
Sbjct: 742 AVSPLDCLGCGNCVDICPSPKGKAIVMTSIDTEIEQAEAWNYGVNLPVKENPMNKETL-- 799

Query: 144 NGDRWESEI 152
            G ++E  +
Sbjct: 800 KGSQFEQPL 808


>gi|312138771|ref|YP_004006107.1| ferredoxin domain oxidoreductase [Rhodococcus equi 103S]
 gi|311888110|emb|CBH47422.1| putative ferredoxin domain oxidoreductase [Rhodococcus equi 103S]
          Length = 470

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 26/76 (34%), Gaps = 8/76 (10%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV-- 119
            C     C  +CP   I    G     G   T    ID   CI C  C +ACP  A+   
Sbjct: 8   HCCKDASCVRVCPQNCIHPAPGED---GFASTETLYIDPDSCIDCTACVDACPASAVKSE 64

Query: 120 --EGP-NFEFATETRQ 132
               P    +A   R+
Sbjct: 65  HALTPAELPYAARNRE 80


>gi|291617338|ref|YP_003520080.1| RnfB [Pantoea ananatis LMG 20103]
 gi|291152368|gb|ADD76952.1| RnfB [Pantoea ananatis LMG 20103]
 gi|327393783|dbj|BAK11205.1| electron transport complex protein RnfB [Pantoea ananatis AJ13355]
          Length = 192

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 24/84 (28%), Gaps = 10/84 (11%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
                    E  CI C  C   CP  AI   +             + +    C  C LC 
Sbjct: 105 PVRTVAWIDEANCIGCTKCIQACPVDAIVGAT----------RAMHTVLSDVCTGCDLCV 154

Query: 111 EACPVDAIVEGPNFEFATETRQEL 134
             CP D I   P        + +L
Sbjct: 155 APCPTDCIEMRPVATTTANWKWDL 178


>gi|253989599|ref|YP_003040955.1| electron transport complex protein RnfB [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253781049|emb|CAQ84211.1| 4Fe-4S ferredoxin, iron-sulphur binding [Photorhabdus asymbiotica]
          Length = 205

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 27/85 (31%), Gaps = 10/85 (11%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
               +     EE CI C  C   CP  AI   +             + +    C  C LC
Sbjct: 104 NPVRKVAFIDEENCIGCTKCIQACPVDAIVGAT----------RAMHTVVEDLCTGCDLC 153

Query: 110 QEACPVDAIVEGPNFEFATETRQEL 134
              CP D I   P     +  + +L
Sbjct: 154 VAPCPTDCIAMIPVATTTSNWKWDL 178


>gi|251779138|ref|ZP_04822058.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243083453|gb|EES49343.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 896

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 40/117 (34%), Gaps = 12/117 (10%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
            K T    FE    +      H +            C  C   C   A  I    + +D 
Sbjct: 223 RKITREEAFEIIKRAEENGLMHQIPNADGPGNTHAICNCCG--CSCYATRIAGMFQNNDM 280

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVE-------GPNFEFATETRQELYYDKE 139
            R      +D  KC+ CG C + CPV+A+          P  E   + R++  Y+ E
Sbjct: 281 VRSNYVSKVDKDKCVACGECVQVCPVNALKLGQKLCTKTPIVE---KKREDFAYNTE 334



 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 3/86 (3%)

Query: 78  ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
            T E   +  +         +D  +CI CG C   C  DAI     ++  + T +EL   
Sbjct: 812 FTEEQMKKETERCLGCGATTVDQDQCIGCGACTTRCKFDAITLYRKYDAQSVTIKEL--- 868

Query: 138 KERLLNNGDRWESEIVRNIVTDSPYR 163
           K +++ N  + +  I    +  S  R
Sbjct: 869 KPKVIKNIIKRKFVIKARKIKKSFKR 894


>gi|238760426|ref|ZP_04621565.1| Electron transport complex protein rnfC [Yersinia aldovae ATCC
           35236]
 gi|238701378|gb|EEP93956.1| Electron transport complex protein rnfC [Yersinia aldovae ATCC
           35236]
          Length = 536

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 3/103 (2%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C LC   CPA  +  +       G       + ++  CI CG C   CP   I  
Sbjct: 351 QSCIRCGLCVDACPAG-LLPQQLYWFSRGDEHEKARNHNLFDCIECGACAYVCP-SNIPL 408

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
              +       + L  +  R      R+E++  R +  +   R
Sbjct: 409 VQYYRQEKAEIRALDQESARAAEAKARFEAKQAR-LAREKLAR 450


>gi|297619219|ref|YP_003707324.1| Cobyrinic acid ac-diamide synthase [Methanococcus voltae A3]
 gi|297378196|gb|ADI36351.1| Cobyrinic acid ac-diamide synthase [Methanococcus voltae A3]
          Length = 293

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 11/62 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  C  C  C   C   A+ I                 +    C  CGLC E CPV+AI
Sbjct: 66  DENLCTKCGDCAKYCNFNALAITKNSAL-----------VFEKLCHDCGLCYEVCPVNAI 114

Query: 119 VE 120
            E
Sbjct: 115 SE 116



 Score = 34.3 bits (77), Expect = 5.2,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 13/37 (35%)

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
               ID   C  CG C + C  +A+    N     E 
Sbjct: 61  KVPKIDENLCTKCGDCAKYCNFNALAITKNSALVFEK 97


>gi|871456|emb|CAA61208.1| putative alpha subunit of formate dehydrogenease
           [Methanothermobacter thermautotrophicus]
          Length = 887

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 59  GEERCIACKLCEAICP---AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
             ++CI C +C  +C    A+A+                R DI    C+ CG C EACPV
Sbjct: 147 NHDKCILCGICVRVCRGLGAEAVDFAYRGHDTRIATFMDR-DILDSSCVSCGECVEACPV 205

Query: 116 DAI 118
            A+
Sbjct: 206 GAL 208


>gi|466366|gb|AAA87057.1| potential NAD-reducing hydrogenase subunit [Desulfovibrio
           fructosovorans]
          Length = 585

 Score = 48.2 bits (113), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 6/79 (7%)

Query: 59  GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115
             ++CI C+ CE +C   Q   + SG            +++++    C  CG C   CP 
Sbjct: 149 DMDKCIMCRRCETMCNTVQTCGVLSGVNRGFTAVVAPAFEMNLADTVCTNCGQCVAVCPT 208

Query: 116 DAIVEGPNFEFATETRQEL 134
            A+V     E+  E  + L
Sbjct: 209 GALV---EHEYIWEVVEAL 224


>gi|319942137|ref|ZP_08016455.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Sutterella wadsworthensis 3_1_45B]
 gi|319804347|gb|EFW01231.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Sutterella wadsworthensis 3_1_45B]
          Length = 552

 Score = 47.8 bits (112), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 18/63 (28%), Gaps = 3/63 (4%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            RC++C  C                         R+  +   C  CG+C   CP  AI  
Sbjct: 491 RRCMSCGNCFEC---DNCYGVCPDNAVIKLGPGKRFRFNYDYCKGCGICANECPCGAIDM 547

Query: 121 GPN 123
              
Sbjct: 548 VRE 550


>gi|302344053|ref|YP_003808582.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfarculus
           baarsii DSM 2075]
 gi|301640666|gb|ADK85988.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfarculus
           baarsii DSM 2075]
          Length = 384

 Score = 47.8 bits (112), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/83 (31%), Positives = 32/83 (38%), Gaps = 5/83 (6%)

Query: 61  ERCIACKLCEAICPAQAIT-----IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           ERCIAC  C   CP  AI       +  P      +  +    D  KCI CG C   CP 
Sbjct: 193 ERCIACGQCVRRCPGLAIRLVKRGPDMPPAPAGSEKPELCAVKDAEKCIGCGDCILTCPQ 252

Query: 116 DAIVEGPNFEFATETRQELYYDK 138
            AI    + +     R+   Y K
Sbjct: 253 SAIEIAWDAQIPQFMRRMAAYTK 275



 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 11/26 (42%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGP 122
            I   +CI CG C   CP  AI    
Sbjct: 189 TIRAERCIACGQCVRRCPGLAIRLVK 214


>gi|258516625|ref|YP_003192847.1| NADH dehydrogenase (quinone) [Desulfotomaculum acetoxidans DSM 771]
 gi|257780330|gb|ACV64224.1| NADH dehydrogenase (quinone) [Desulfotomaculum acetoxidans DSM 771]
          Length = 619

 Score = 47.8 bits (112), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 10/68 (14%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            L  +   +E+C  C  C   CPA AIT E                ID+ KCI CG C  
Sbjct: 560 ELLTFVIDKEKCNGCGKCARSCPAGAITGEKKMPHE----------IDITKCIKCGACLA 609

Query: 112 ACPVDAIV 119
            C  DAI 
Sbjct: 610 GCKFDAIY 617



 Score = 37.0 bits (84), Expect = 0.86,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 15/40 (37%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            I             + + ID  KC  CG C  +CP  AI
Sbjct: 547 HINDKRCPAGACTELLTFVIDKEKCNGCGKCARSCPAGAI 586


>gi|163736166|ref|ZP_02143585.1| iron-sulfur cluster-binding protein [Phaeobacter gallaeciensis
           BS107]
 gi|161390036|gb|EDQ14386.1| iron-sulfur cluster-binding protein [Phaeobacter gallaeciensis
           BS107]
          Length = 415

 Score = 47.8 bits (112), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 9/66 (13%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C  C+ C  +CP  A+          G       D     C+ CGLC   C  +AI   
Sbjct: 233 DCTLCQACTWVCPTNAL---------IGAENGGGLDFVEADCMQCGLCVSVCRQNAIRLV 283

Query: 122 PNFEFA 127
           P  E +
Sbjct: 284 PRLELS 289


>gi|163794187|ref|ZP_02188159.1| formate dehydrogenase alpha subunit [alpha proteobacterium BAL199]
 gi|159180355|gb|EDP64876.1| formate dehydrogenase alpha subunit [alpha proteobacterium BAL199]
          Length = 929

 Score = 47.8 bits (112), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114
             + CI C LC   C  +    +     + G +  + +D    +    C+ CG C +ACP
Sbjct: 149 NLDACIQCNLCVRACR-EVQVNDVIGLAYRGHQAKIVFDFDDAMGASTCVGCGECVQACP 207

Query: 115 VDAIV 119
             A++
Sbjct: 208 TGALM 212



 Score = 34.7 bits (78), Expect = 3.8,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 6/69 (8%)

Query: 47  FRGEHALR----RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           +RG  A          G   C+ C  C   CP  A+  ++      G  +          
Sbjct: 176 YRGHQAKIVFDFDDAMGASTCVGCGECVQACPTGALMPKTALD-EFGLFKGKADRQVESV 234

Query: 103 CIYCGL-CQ 110
           C YCG+ CQ
Sbjct: 235 CPYCGVGCQ 243


>gi|119094136|gb|ABL60966.1| iron-sulfur cluster-binding protein [uncultured marine bacterium
           HF10_19P19]
          Length = 669

 Score = 47.8 bits (112), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 27/82 (32%), Gaps = 10/82 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++C  C  C   CPA A+                        C+ CG+C   CP   I
Sbjct: 523 DTDKCTICLSCVGACPAGALQDNPDAPQLL---------FREDACLQCGICVATCPEKVI 573

Query: 119 VEGPNFEFATETRQ-ELYYDKE 139
              P F  + +    EL  + E
Sbjct: 574 TLVPQFNLSDKAMATELVIEDE 595



 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 19/54 (35%), Gaps = 11/54 (20%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
             C  C  +CPA AI +                 ID   C  CG+C   CP  A
Sbjct: 288 TGCSRCLDVCPAGAIVVAGD-----------HVAIDPAVCGGCGMCGAVCPSGA 330



 Score = 35.1 bits (79), Expect = 3.0,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 21/49 (42%)

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           ++A   E+            R DID  KC  C  C  ACP  A+ + P+
Sbjct: 499 SKANGAETDVIPLPEGAPYGRVDIDTDKCTICLSCVGACPAGALQDNPD 547


>gi|150399527|ref|YP_001323294.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus vannielii SB]
 gi|150012230|gb|ABR54682.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           vannielii SB]
          Length = 253

 Score = 47.8 bits (112), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 11/87 (12%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
           +E        R    L+ +    + CI C +CE  CP  AIT+E          R    D
Sbjct: 110 YELNEVPVAHRK-IRLKEHCIDMDSCIKCGICEKFCPTDAITVE----------RKNSID 158

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNF 124
           I++  C+ C  C++ CP  +I      
Sbjct: 159 INLNLCMGCTACEKVCPKKSIKVENEM 185



 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 33/90 (36%), Gaps = 11/90 (12%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +              +      E+C+ C +C  ICP  AIT E+G            
Sbjct: 174 CPKKSIKVENEMGKIDFKKSIFLDNEKCVDCMVCSEICPVSAITYENGKMVVSKPV---- 229

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
                  CI+CG C++ CPV AI      E
Sbjct: 230 -------CIFCGKCEKNCPVTAISIENVME 252



 Score = 40.5 bits (93), Expect = 0.081,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 37/96 (38%), Gaps = 16/96 (16%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR------ 91
           FE+   S   +            E C+ C++C   CP  AI +  G     G        
Sbjct: 55  FEECPVSA-IKKPSVKNPAEIIPENCVKCEICAKTCPVSAINVLEGKAELKGDTVIYELN 113

Query: 92  ---------RTVRYDIDMIKCIYCGLCQEACPVDAI 118
                    R   + IDM  CI CG+C++ CP DAI
Sbjct: 114 EVPVAHRKIRLKEHCIDMDSCIKCGICEKFCPTDAI 149



 Score = 38.5 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 9/69 (13%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
              +       +CI C LC   CP  AI   S              +I    C+ C +C 
Sbjct: 36  PVEKNLYVESSKCIRCNLCFEECPVSAIKKPSVKNPA---------EIIPENCVKCEICA 86

Query: 111 EACPVDAIV 119
           + CPV AI 
Sbjct: 87  KTCPVSAIN 95


>gi|20806954|ref|NP_622125.1| pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin
           oxidoreductase, alpha subunit [Thermoanaerobacter
           tengcongensis MB4]
 gi|20515433|gb|AAM23729.1| Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin
           oxidoreductases, alpha subunit [Thermoanaerobacter
           tengcongensis MB4]
          Length = 1173

 Score = 47.8 bits (112), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 40/117 (34%), Gaps = 28/117 (23%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTRRTV 94
            G+ +   RG           + CI C  C  +CP  AI     T E      +G +   
Sbjct: 667 PGTAAYEKRGIAVDVPEWQ-IDNCIQCNQCAFVCPHAAIRPFLLTEEEVKNAPEGFKVKK 725

Query: 95  -----------RYDIDMIKCIYCGLCQEACP--VDAIVEGP---------NFEFATE 129
                      R  + ++ C  CG+C   CP    A+V  P         N+E+A  
Sbjct: 726 AIGKGFEGLYYRIQVSVLDCTGCGVCVNECPAKEKALVMKPLETQLHEAENWEYAMT 782


>gi|125972951|ref|YP_001036861.1| hydrogenase, Fe-only [Clostridium thermocellum ATCC 27405]
 gi|256005707|ref|ZP_05430663.1| hydrogenase, Fe-only [Clostridium thermocellum DSM 2360]
 gi|125713176|gb|ABN51668.1| hydrogenase, Fe-only [Clostridium thermocellum ATCC 27405]
 gi|255990338|gb|EEU00464.1| hydrogenase, Fe-only [Clostridium thermocellum DSM 2360]
 gi|316940813|gb|ADU74847.1| hydrogenase, Fe-only [Clostridium thermocellum DSM 1313]
          Length = 566

 Score = 47.8 bits (112), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 3/72 (4%)

Query: 55  RYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQE 111
                  +CI C  C  +C   Q +              +  +D  I    C+ CG C  
Sbjct: 140 CITRDRSKCILCGDCVRVCNEVQNVGAIDFAYRGSKMTISTVFDKPIFESNCVGCGQCAL 199

Query: 112 ACPVDAIVEGPN 123
           ACP  AIV   +
Sbjct: 200 ACPTGAIVVKDD 211


>gi|320101377|ref|YP_004176969.1| pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta
           [Desulfurococcus mucosus DSM 2162]
 gi|319753729|gb|ADV65487.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Desulfurococcus mucosus DSM 2162]
          Length = 93

 Score = 47.8 bits (112), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 10/65 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            + RC  C  CE  CP   I +E                ID   C  CG+C + CPV+AI
Sbjct: 37  DQGRCTRCYQCEIYCPVNVIRVEPETGAV----------IDYEYCKGCGVCADVCPVNAI 86

Query: 119 VEGPN 123
                
Sbjct: 87  SLVEE 91


>gi|325676533|ref|ZP_08156211.1| ferredoxin--NADP(+) reductase [Rhodococcus equi ATCC 33707]
 gi|325552711|gb|EGD22395.1| ferredoxin--NADP(+) reductase [Rhodococcus equi ATCC 33707]
          Length = 470

 Score = 47.8 bits (112), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 26/76 (34%), Gaps = 8/76 (10%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV-- 119
            C     C  +CP   I    G     G   T    ID   CI C  C +ACP  A+   
Sbjct: 8   HCCKDASCVRVCPQNCIHPAPGED---GFASTETLYIDPDSCIDCTACVDACPASAVKSE 64

Query: 120 --EGP-NFEFATETRQ 132
               P    +A   R+
Sbjct: 65  HALTPAELPYAARNRE 80


>gi|300088087|ref|YP_003758609.1| glutamate synthase [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527820|gb|ADJ26288.1| Glutamate synthase (NADPH) [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 501

 Score = 47.8 bits (112), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 12/92 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E+CI C++C   C   +   ++                   KCI C  C   CP +A+
Sbjct: 14  DPEKCIKCQVCVNQCSFDSHYYDADDDE---------IRCRDGKCIGCHRCVLFCPTNAL 64

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWES 150
           V   N     E R+   +  E + +   + E 
Sbjct: 65  VVRRN---PLEYRENYGWKPEYIEDIQKQAEQ 93


>gi|325678607|ref|ZP_08158217.1| pyruvate synthase [Ruminococcus albus 8]
 gi|324109657|gb|EGC03863.1| pyruvate synthase [Ruminococcus albus 8]
          Length = 1192

 Score = 47.8 bits (112), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 23/83 (27%), Gaps = 17/83 (20%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQ----------------AITIESGPRCHDGTR 91
           RG        NG E CI C  C  +CP                  A+  E          
Sbjct: 688 RGIAVDVPAWNG-ENCIQCNFCSYVCPHAVIRPVIMTDDELAKAPALAKEKAVPVTGMAG 746

Query: 92  RTVRYDIDMIKCIYCGLCQEACP 114
                 +  + C  CG C   CP
Sbjct: 747 YNFVMTMSALDCTGCGSCVNVCP 769


>gi|225018512|ref|ZP_03707704.1| hypothetical protein CLOSTMETH_02459 [Clostridium methylpentosum
           DSM 5476]
 gi|224948713|gb|EEG29922.1| hypothetical protein CLOSTMETH_02459 [Clostridium methylpentosum
           DSM 5476]
          Length = 203

 Score = 47.8 bits (112), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 30/72 (41%), Gaps = 12/72 (16%)

Query: 47  FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
           F G   L       + CI C  C  ICP Q I   S             Y I    C++C
Sbjct: 139 FGGAELLNVGFQITDSCIECGRCRRICPQQCIEPGS------------PYVIRQQNCLHC 186

Query: 107 GLCQEACPVDAI 118
           GLCQE CPV AI
Sbjct: 187 GLCQEQCPVQAI 198


>gi|225023979|ref|ZP_03713171.1| hypothetical protein EIKCOROL_00846 [Eikenella corrodens ATCC
           23834]
 gi|224943004|gb|EEG24213.1| hypothetical protein EIKCOROL_00846 [Eikenella corrodens ATCC
           23834]
          Length = 291

 Score = 47.8 bits (112), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 10/66 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C  C   CP  AI   S           + + +   +C  CGLC   CPVD
Sbjct: 76  YIDETACIGCTACIKACPVDAILGASK----------LMHTVLADECTGCGLCLPPCPVD 125

Query: 117 AIVEGP 122
            I   P
Sbjct: 126 CIRMQP 131


>gi|167767279|ref|ZP_02439332.1| hypothetical protein CLOSS21_01798 [Clostridium sp. SS2/1]
 gi|317497306|ref|ZP_07955629.1| 4Fe-4S binding domain-containing protein [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|167711254|gb|EDS21833.1| hypothetical protein CLOSS21_01798 [Clostridium sp. SS2/1]
 gi|291559411|emb|CBL38211.1| electron transport complex, RnfABCDGE type, B subunit
           [butyrate-producing bacterium SSC/2]
 gi|316895375|gb|EFV17534.1| 4Fe-4S binding domain-containing protein [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 278

 Score = 47.8 bits (112), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 30/83 (36%), Gaps = 11/83 (13%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P  K +       E         +  CI CK CE +C   AI +E+             
Sbjct: 191 VPENKKTRVQCSSKEFGKNVMSVCKAGCIGCKACEKVCRLGAIKVENNIA---------- 240

Query: 96  YDIDMIKCIYCGLCQEACPVDAI 118
             ID  KC+ CGLC   CP   I
Sbjct: 241 -QIDYDKCVGCGLCAGKCPKGII 262



 Score = 40.9 bits (94), Expect = 0.062,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 11/61 (18%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+    C A+CP  AI+I +G              ID   C+ CG C E CP   I   P
Sbjct: 144 CMGFGSCAAVCPENAISIVNGIAH-----------IDEEACVGCGKCAETCPKALIDLVP 192

Query: 123 N 123
            
Sbjct: 193 E 193



 Score = 35.1 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 5/80 (6%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-----DIDMIKCIYCGLCQE 111
              EE C+ C  C   CP   I +    +       +  +      +    CI C  C++
Sbjct: 167 HIDEEACVGCGKCAETCPKALIDLVPENKKTRVQCSSKEFGKNVMSVCKAGCIGCKACEK 226

Query: 112 ACPVDAIVEGPNFEFATETR 131
            C + AI    N       +
Sbjct: 227 VCRLGAIKVENNIAQIDYDK 246


>gi|167759969|ref|ZP_02432096.1| hypothetical protein CLOSCI_02335 [Clostridium scindens ATCC 35704]
 gi|167662588|gb|EDS06718.1| hypothetical protein CLOSCI_02335 [Clostridium scindens ATCC 35704]
          Length = 708

 Score = 47.8 bits (112), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 9/66 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ CI C  C  +C               G    +    D   CI+CG C   CPV++I
Sbjct: 22  HEDLCIKCGQCRQVC---------EREIGVGRLYDLVSTKDTAICIHCGQCANVCPVNSI 72

Query: 119 VEGPNF 124
            E   +
Sbjct: 73  TEVYEY 78


>gi|126659089|ref|ZP_01730229.1| pyruvate oxidoreductase [Cyanothece sp. CCY0110]
 gi|126619617|gb|EAZ90346.1| pyruvate oxidoreductase [Cyanothece sp. CCY0110]
          Length = 1210

 Score = 47.8 bits (112), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 33/105 (31%), Gaps = 26/105 (24%)

Query: 58  NGEERCIACKLCEAICPA--------------QAITIES--GPRCHDGTRRTVRYDID-- 99
             E+ C+ C  C  +CP                A T       +  D  +  +++ I   
Sbjct: 688 WDEDVCVQCGKCVLVCPHAVIRSKVYEEAALSNAPTSFKSAEAKDLDWKKTDLKFTIQVA 747

Query: 100 MIKCIYCGLCQEACPV--------DAIVEGPNFEFATETRQELYY 136
              C  CG+C + CP          AI   P      + R+   Y
Sbjct: 748 AEDCTGCGVCVDVCPAKNKSQPKLKAINMAPQLPIREQERENWDY 792


>gi|124028465|ref|YP_001013785.1| indolepyruvate oxidoreductase subunit iorA [Hyperthermus butylicus
           DSM 5456]
 gi|123979159|gb|ABM81440.1| indolepyruvate oxidoreductase subunit iorA [Hyperthermus butylicus
           DSM 5456]
          Length = 651

 Score = 47.8 bits (112), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 10/70 (14%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R +     Y   EE+C AC +C       AI      +            +D   C  CG
Sbjct: 571 RAKVKPPVYYVDEEKCTACGICYTAFNCPAIRRRPDGKA----------MVDPALCTGCG 620

Query: 108 LCQEACPVDA 117
           +C + CP  A
Sbjct: 621 VCAQVCPFGA 630


>gi|284172810|ref|YP_003406192.1| formate dehydrogenase, alpha subunit [Haloterrigena turkmenica DSM
           5511]
 gi|284017570|gb|ADB63519.1| formate dehydrogenase, alpha subunit [Haloterrigena turkmenica DSM
           5511]
          Length = 1111

 Score = 47.8 bits (112), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 4/71 (5%)

Query: 57  PNGEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
                +CI C  C   C        + IE          ++    +    C+ CG C   
Sbjct: 207 QIDRNKCILCNRCVEGCNDVQVEGVLRIEGHGEDTRIGFQSDAETMAESDCVSCGHCATV 266

Query: 113 CPVDAIVEGPN 123
           CP  A+ E   
Sbjct: 267 CPTGALTEKDI 277


>gi|269793044|ref|YP_003317948.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermanaerovibrio
           acidaminovorans DSM 6589]
 gi|269100679|gb|ACZ19666.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermanaerovibrio
           acidaminovorans DSM 6589]
          Length = 1175

 Score = 47.8 bits (112), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 36/121 (29%), Gaps = 20/121 (16%)

Query: 12  FLKEFVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLC 69
           F+KE +G   +          +   P     T  S   +   A+       E CI C  C
Sbjct: 635 FVKEVLGPMLI--DEADSVPVSALPPDGTYPTGTSQYEKRNIAIDIPVWDPEVCIQCGKC 692

Query: 70  EAICPA--------------QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLCQEAC 113
              CP                A              + ++Y +      CI CGLC + C
Sbjct: 693 SLACPHAAIRAKVYDPKLLEGAPAAFKSADAKWKDFQGMKYTVQVAPEDCIGCGLCVQNC 752

Query: 114 P 114
           P
Sbjct: 753 P 753



 Score = 33.9 bits (76), Expect = 7.2,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 10/19 (52%)

Query: 100 MIKCIYCGLCQEACPVDAI 118
              CI CG C  ACP  AI
Sbjct: 683 PEVCIQCGKCSLACPHAAI 701


>gi|4972241|emb|CAB43935.1| pyruvate ferredoxin oxidoreductase [Clostridium pasteurianum]
          Length = 1175

 Score = 47.8 bits (112), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 35/105 (33%), Gaps = 28/105 (26%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGT------------RRT 93
            A+       ++CI C  C  +CP   I     T E      +G             +  
Sbjct: 678 IAINVPEWQVDKCIQCNQCSYVCPHAVIRPFLLTEEETKNAPEGFTSKPALGLKTAEKLN 737

Query: 94  VRYDIDMIKCIYCGLCQEACP--VDAIVEGP---------NFEFA 127
               I  + C  CG C + CP    A++  P         NFE+A
Sbjct: 738 FAIKISPLDCTGCGNCAQVCPAKEKALIMKPAESQYKEAENFEYA 782


>gi|5911353|gb|AAD55756.1|AF132673_1 pyruvate:ferredoxin oxidoreductase [Clostridium pasteurianum]
          Length = 1098

 Score = 47.8 bits (112), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 35/105 (33%), Gaps = 28/105 (26%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGT------------RRT 93
            A+       ++CI C  C  +CP   I     T E      +G             +  
Sbjct: 677 IAINVPEWQVDKCIQCNQCSYVCPHAVIRPFLLTEEETKNAPEGFTSKPALGLKTAEKLN 736

Query: 94  VRYDIDMIKCIYCGLCQEACP--VDAIVEGP---------NFEFA 127
               I  + C  CG C + CP    A++  P         NFE+A
Sbjct: 737 FAIKISPLDCTGCGNCAQVCPAKEKALIMKPAESQYKEAENFEYA 781


>gi|88797368|ref|ZP_01112958.1| pyruvate ferredoxin/flavodoxin oxidoreductase family protein
           [Reinekea sp. MED297]
 gi|88780237|gb|EAR11422.1| pyruvate ferredoxin/flavodoxin oxidoreductase family protein
           [Reinekea sp. MED297]
          Length = 1190

 Score = 47.8 bits (112), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 28/89 (31%), Gaps = 24/89 (26%)

Query: 58  NGEERCIACKLCEAICPAQAIT---------------IESGPRCHDGTRRTV-RYDIDMI 101
              + CI C  C A+CP  AI                  S P    G   T     +   
Sbjct: 689 WDPDICIQCGNCVAVCPHAAIRSKFYHEDLLDGAPAGFRSTPTTARGFPETQYTLQVYAE 748

Query: 102 KCIYCGLCQEACPV--------DAIVEGP 122
            C  C LC EACPV         AI   P
Sbjct: 749 DCTGCELCVEACPVRAEDDSSRRAINMTP 777



 Score = 40.1 bits (92), Expect = 0.091,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 10/26 (38%)

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFE 125
              CI CG C   CP  AI      E
Sbjct: 691 PDICIQCGNCVAVCPHAAIRSKFYHE 716


>gi|323475168|gb|ADX85774.1| ABC transporter related protein [Sulfolobus islandicus REY15A]
 gi|323477900|gb|ADX83138.1| ABC transporter related protein [Sulfolobus islandicus HVE10/4]
          Length = 602

 Score = 47.8 bits (112), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 23/76 (30%), Gaps = 5/76 (6%)

Query: 47  FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
           F     +       ++C     C   CP        G           +  I    CI C
Sbjct: 2   FVRVAVINYDFCKPDKCNL--ECINFCPVD---RSGGKAIELSDIVKGKPVIYEETCIGC 56

Query: 107 GLCQEACPVDAIVEGP 122
           G+C + CP +AI    
Sbjct: 57  GICVKKCPYEAISIVN 72


>gi|312135772|ref|YP_004003110.1| dihydroorotate dehydrogenase family protein [Caldicellulosiruptor
           owensensis OL]
 gi|311775823|gb|ADQ05310.1| dihydroorotate dehydrogenase family protein [Caldicellulosiruptor
           owensensis OL]
          Length = 381

 Score = 47.8 bits (112), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 12/67 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +E+C +C  C  +C   AI  ++G    +              C  CGLC E CPV AI
Sbjct: 326 DKEKCTSCSKCFTVCIYDAIEKDNGKFRVN------------QNCDGCGLCAELCPVKAI 373

Query: 119 VEGPNFE 125
                 E
Sbjct: 374 SMVKRGE 380


>gi|291514556|emb|CBK63766.1| hypothetical protein AL1_12970 [Alistipes shahii WAL 8301]
          Length = 281

 Score = 47.8 bits (112), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 26/80 (32%), Gaps = 12/80 (15%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           +    +       +RC  C  C AICP QAI                       +CI C 
Sbjct: 199 KKNPVVYLPACDADRCTHCGRCAAICPTQAIARGDEAHTD------------PARCIRCC 246

Query: 108 LCQEACPVDAIVEGPNFEFA 127
            C + CPV A      F  A
Sbjct: 247 ACVKGCPVGARSFHTPFAAA 266


>gi|262044609|ref|ZP_06017664.1| electron transport complex protein RnfC [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
 gi|259038010|gb|EEW39226.1| electron transport complex protein RnfC [Klebsiella pneumoniae
           subsp. rhinoscleromatis ATCC 13884]
          Length = 582

 Score = 47.8 bits (112), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 40/112 (35%), Gaps = 13/112 (11%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEKGCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHNLADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            I     F     E A   ++E     +R      R+E+   R +  +   R
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEE-----QRAAEAKARFEARQAR-LEREKAAR 474


>gi|255067077|ref|ZP_05318932.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           sicca ATCC 29256]
 gi|255048673|gb|EET44137.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           sicca ATCC 29256]
          Length = 282

 Score = 47.8 bits (112), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 27/75 (36%), Gaps = 11/75 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   S             + +   +C  CGLC   CPVD I
Sbjct: 76  DEAACIGCTACIRACPVDAIMGASK----------FMHTVISDECTGCGLCLPPCPVDCI 125

Query: 119 VEGP-NFEFATETRQ 132
              P   E+    R 
Sbjct: 126 DMIPSEQEYLPTARS 140



 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/22 (59%), Positives = 14/22 (63%)

Query: 98  IDMIKCIYCGLCQEACPVDAIV 119
           ID   CI C  C  ACPVDAI+
Sbjct: 75  IDEAACIGCTACIRACPVDAIM 96


>gi|116749158|ref|YP_845845.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Syntrophobacter fumaroxidans MPOB]
 gi|116698222|gb|ABK17410.1| glutamate synthase (NADPH) GltB3 subunit [Syntrophobacter
           fumaroxidans MPOB]
          Length = 777

 Score = 47.8 bits (112), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 27/82 (32%), Gaps = 5/82 (6%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
               +F G        +    C  C +C  +CP  AI+ +                +D  
Sbjct: 697 PRMLKFDGIEQCASQCSSCGACRDCGICVTMCPQTAISRQEKDNP-----FGFEMVVDPD 751

Query: 102 KCIYCGLCQEACPVDAIVEGPN 123
           +CI CG C  +CP        N
Sbjct: 752 RCIGCGFCAGSCPCGIWDLVEN 773


>gi|320641983|gb|EFX11347.1| electron transport complex protein RnfB [Escherichia coli O157:H7
           str. G5101]
          Length = 192

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 24/76 (31%), Gaps = 10/76 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   +             + +    C  C LC + CP   I
Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTHCI 162

Query: 119 VEGPNFEFATETRQEL 134
                 E     + +L
Sbjct: 163 SLQQVAETPDSWKWDL 178



 Score = 35.5 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C  C +ACPVDAI
Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132


>gi|317405896|gb|EFV86178.1| ferredoxin-NADP oxidoreductase [Achromobacter xylosoxidans C54]
          Length = 415

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 11/69 (15%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
              L+++    E CI C  CE  CP  AIT +S             Y +D   C  C  C
Sbjct: 7   MEVLKQHLIDPEICIRCNTCEETCPIDAITHDSN-----------NYVVDPDICNSCMAC 55

Query: 110 QEACPVDAI 118
              CP  +I
Sbjct: 56  VPPCPTGSI 64



 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 17/40 (42%)

Query: 84  PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                      ++ ID   CI C  C+E CP+DAI    N
Sbjct: 1   MNAALPMEVLKQHLIDPEICIRCNTCEETCPIDAITHDSN 40


>gi|317486663|ref|ZP_07945480.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
 gi|316922046|gb|EFV43315.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
          Length = 377

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 7/70 (10%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
             +CI C  C  +CP  A+++E          +     ID  +CI C  C  AC   AI 
Sbjct: 197 YPKCIGCGQCVPLCPRSALSLEKAE-------KGRHAVIDKERCIGCYECVTACKQGAIG 249

Query: 120 EGPNFEFATE 129
                E++  
Sbjct: 250 VDTPNEYSDF 259



 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 5/49 (10%)

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140
           +  R  +   KCI CG C   CP  A+      E A + R     DKER
Sbjct: 189 QHGRNVVIYPKCIGCGQCVPLCPRSALSL----EKAEKGR-HAVIDKER 232


>gi|315637870|ref|ZP_07893060.1| pyruvate-ferredoxin oxidoreductase [Campylobacter upsaliensis JV21]
 gi|315482111|gb|EFU72725.1| pyruvate-ferredoxin oxidoreductase [Campylobacter upsaliensis JV21]
          Length = 1187

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/132 (16%), Positives = 40/132 (30%), Gaps = 28/132 (21%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA------------------QAIT 79
           FE G+T    RG   +         CI C  C ++CP                       
Sbjct: 668 FEHGTTEFEKRGVGVMVPRWIE-ANCIQCNQCASVCPHAVIRPFLINDEEMAKAPRGVKE 726

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-----AIVEGPNFEFATETRQEL 134
                +   G + + +  +  + C  C LC   CP        +      +F  +   + 
Sbjct: 727 HALDAKGTKGEKLSFKIQVSPLDCTGCELCVHECPTKEKSLVMVPLQEEMDFGEQENADY 786

Query: 135 YYD----KERLL 142
            +     K+++L
Sbjct: 787 LFKQIEYKDQIL 798


>gi|293410506|ref|ZP_06654082.1| conserved hypothetical protein [Escherichia coli B354]
 gi|291470974|gb|EFF13458.1| conserved hypothetical protein [Escherichia coli B354]
          Length = 411

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +       ++C+ C  C   C         G +  + + +T     +  K
Sbjct: 324 VPAEDLDRSYIVYPHINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 378 CVGCLLCGHVCPVGCIDLG 396


>gi|238760425|ref|ZP_04621564.1| Electron transport complex protein rnfB [Yersinia aldovae ATCC
           35236]
 gi|238701377|gb|EEP93955.1| Electron transport complex protein rnfB [Yersinia aldovae ATCC
           35236]
          Length = 207

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 24/78 (30%), Gaps = 10/78 (12%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C  C   CP  AI   +             + +    C  C LC   CP D
Sbjct: 111 FIDEANCIGCTKCIQACPVDAIVGAT----------RAMHTVLPDLCTGCDLCVAPCPTD 160

Query: 117 AIVEGPNFEFATETRQEL 134
            I   P        + +L
Sbjct: 161 CIEMIPVATTTANWKWDL 178


>gi|218782172|ref|YP_002433490.1| formate dehydrogenase, alpha subunit [Desulfatibacillum
           alkenivorans AK-01]
 gi|218763556|gb|ACL06022.1| Cytoplasmic formate dehydrogenase, alpha subunit [Desulfatibacillum
           alkenivorans AK-01]
          Length = 920

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 30/94 (31%), Gaps = 13/94 (13%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC---PAQAITIESGPRCHD 88
            T+    EK       R             RCI C  C A C                  
Sbjct: 149 YTVRQYPEKKDEPLIIR----------DYSRCIRCGRCVAACNEIQVNLAIDTGFLEEDP 198

Query: 89  GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            +     Y +    C+YCG C +ACPV A+VE  
Sbjct: 199 FSNPDKAYPVAKDNCVYCGECIQACPVGALVERK 232


>gi|218700619|ref|YP_002408248.1| dihydropyrimidine dehydrogenase [Escherichia coli IAI39]
 gi|300935069|ref|ZP_07150100.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 21-1]
 gi|218370605|emb|CAR18412.1| putative oxidoreductase subunit [Escherichia coli IAI39]
 gi|300459650|gb|EFK23143.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 21-1]
          Length = 411

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +       ++C+ C  C   C         G +  + + +T     +  K
Sbjct: 324 VPAEDLDRSYIVYPHINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 378 CVGCLLCGHVCPVGCIDLG 396


>gi|84489476|ref|YP_447708.1| glutamate synthase subunit 2 [Methanosphaera stadtmanae DSM 3091]
 gi|84372795|gb|ABC57065.1| putative glutamate synthase, subunit 2 with ferredoxin domain
           [Methanosphaera stadtmanae DSM 3091]
          Length = 492

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 10/68 (14%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                +  C  C  C + CP     I +               +    C+ C +C++ CP
Sbjct: 26  CDNPKKSLCKNCYSCYSNCPHDVYEIINDEPQP----------VHKENCVGCKICEQMCP 75

Query: 115 VDAIVEGP 122
            +AI   P
Sbjct: 76  TNAIYVTP 83


>gi|73669053|ref|YP_305068.1| hypothetical protein Mbar_A1540 [Methanosarcina barkeri str.
           Fusaro]
 gi|72396215|gb|AAZ70488.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 379

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 10/76 (13%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G++          +C  C  C   C   AI                 + I+  KCI C  
Sbjct: 299 GKYYKIYPRINRRKCTHCGACYLNCSPHAIEQLEDG----------SFKINEEKCILCYC 348

Query: 109 CQEACPVDAIVEGPNF 124
           C+E CP +A+    +F
Sbjct: 349 CRELCPSNAVEIKKSF 364


>gi|13541408|ref|NP_111096.1| indolepyruvate:ferredoxin oxidoreductase, alpha and beta subunits
           [Thermoplasma volcanium GSS1]
 gi|14324791|dbj|BAB59718.1| indolpyruvate ferredoxin oxidoreductase [IOR] alpha subunit
           [Thermoplasma volcanium GSS1]
          Length = 604

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 11/60 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E+C  C +C       +I   S  +                 CI CG C E CP +AI
Sbjct: 540 DLEKCTGCSICYDFFTCPSILPLSNKKA-----------FIDDSCIGCGACVEVCPFNAI 588


>gi|333019266|gb|EGK38551.1| putative pyruvate-flavodoxin oxidoreductase domain protein
           [Shigella flexneri K-227]
          Length = 593

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 32/138 (23%), Gaps = 24/138 (17%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 65  MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 118

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPVDA 117
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 119 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQMAPEDCTGCNLCVEVCPAKD 178

Query: 118 IVEGPNFEFATETRQELY 135
                       +RQE  
Sbjct: 179 RQNPEIKAINMMSRQEHV 196


>gi|298384459|ref|ZP_06994019.1| protein HymB [Bacteroides sp. 1_1_14]
 gi|298262738|gb|EFI05602.1| protein HymB [Bacteroides sp. 1_1_14]
          Length = 635

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 10/66 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L  Y    E CI C LC   CPA AI+                + I+  KCI CG+C   
Sbjct: 577 LLTYTINPELCIGCHLCAKNCPADAISGL----------VRKPHVINPEKCIKCGMCMAR 626

Query: 113 CPVDAI 118
           C   AI
Sbjct: 627 CKFKAI 632



 Score = 38.2 bits (87), Expect = 0.44,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 8/62 (12%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
            +          +  + Y I+   CI C LC + CP DAI        +   R+    + 
Sbjct: 563 HVRDKTCRAKQCKSLLTYTINPELCIGCHLCAKNCPADAI--------SGLVRKPHVINP 614

Query: 139 ER 140
           E+
Sbjct: 615 EK 616


>gi|300088669|ref|YP_003759191.1| nitrite and sulphite reductase 4Fe-4S region [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299528402|gb|ADJ26870.1| nitrite and sulphite reductase 4Fe-4S region [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 516

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 26/73 (35%), Gaps = 11/73 (15%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G +    +    + C  C LC  +C  +AIT                  ID   C  CG 
Sbjct: 381 GFYGTMDFDYNADACTNCGLCVPVCKRRAITQAGD-----------NIVIDRESCRQCGQ 429

Query: 109 CQEACPVDAIVEG 121
           C   CP DA+ E 
Sbjct: 430 CVAVCPFDALTET 442


>gi|227828106|ref|YP_002829886.1| ATPase RIL [Sulfolobus islandicus M.14.25]
 gi|238620306|ref|YP_002915132.1| putative ATPase RIL [Sulfolobus islandicus M.16.4]
 gi|227459902|gb|ACP38588.1| ABC transporter related [Sulfolobus islandicus M.14.25]
 gi|238381376|gb|ACR42464.1| ABC transporter related [Sulfolobus islandicus M.16.4]
          Length = 602

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 23/76 (30%), Gaps = 5/76 (6%)

Query: 47  FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
           F     +       ++C     C   CP        G           +  I    CI C
Sbjct: 2   FVRVAVINYDFCKPDKCNL--ECINFCPVD---RSGGKAIELSDIVKGKPVIYEETCIGC 56

Query: 107 GLCQEACPVDAIVEGP 122
           G+C + CP +AI    
Sbjct: 57  GICVKKCPYEAISIVN 72


>gi|226940150|ref|YP_002795223.1| RnfB2 [Laribacter hongkongensis HLHK9]
 gi|226715076|gb|ACO74214.1| RnfB2 [Laribacter hongkongensis HLHK9]
          Length = 192

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/87 (31%), Positives = 33/87 (37%), Gaps = 15/87 (17%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           PF +G   P+ R    +      E  CI C LC   CP  AI   +             +
Sbjct: 95  PFAEGMAQPKPRSVAVI-----DETTCIGCTLCIQACPVDAILGSAKQ----------MH 139

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPN 123
            I   +C  C LC E CPVD I   P 
Sbjct: 140 TILSSECTGCELCLEPCPVDCIRMEPI 166


>gi|163745493|ref|ZP_02152853.1| formate dehydrogenase, alpha subunit [Oceanibulbus indolifex
           HEL-45]
 gi|161382311|gb|EDQ06720.1| formate dehydrogenase, alpha subunit [Oceanibulbus indolifex
           HEL-45]
          Length = 921

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID----MIKCIYCGLCQEACP 114
             + CI C LC   C  +    +       G      +DID       C+ CG C +ACP
Sbjct: 147 NLDACIQCNLCVRACR-EVQVNDVIGMAGRGHDAYPVFDIDDPMGASTCVACGECVQACP 205

Query: 115 VDAIV 119
             A++
Sbjct: 206 TGALM 210


>gi|161522384|ref|YP_001585313.1| dihydropyrimidine dehydrogenase [Burkholderia multivorans ATCC
           17616]
 gi|189348740|ref|YP_001941936.1| dihydropyrimidine dehydrogenase [Burkholderia multivorans ATCC
           17616]
 gi|160345937|gb|ABX19021.1| dihydroorotate dehydrogenase family protein [Burkholderia
           multivorans ATCC 17616]
 gi|189338878|dbj|BAG47946.1| dihydroorotate oxidase [Burkholderia multivorans ATCC 17616]
          Length = 435

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 6/76 (7%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++       +    ++RCI C LC   C     + ++  R  DG R    +++    C+ 
Sbjct: 328 KYLNLQYDIKARIDQDRCIQCGLCHIACED--TSHQAITREKDGVR---HFEVVDADCVG 382

Query: 106 CGLCQEACPV-DAIVE 120
           C LC   CPV   I  
Sbjct: 383 CNLCMHVCPVEQCITM 398


>gi|194425849|ref|ZP_03058405.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli B171]
 gi|194415904|gb|EDX32170.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli B171]
          Length = 740

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|332981913|ref|YP_004463354.1| glycyl-radical enzyme activating protein family [Mahella
           australiensis 50-1 BON]
 gi|332699591|gb|AEE96532.1| glycyl-radical enzyme activating protein family [Mahella
           australiensis 50-1 BON]
          Length = 301

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 10/86 (11%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L +     ++CI C  C  +CP +A  I++  R                 C +CG C + 
Sbjct: 45  LPQVQFFPQKCIGCGKCVEVCPKKAHAIDANGRREF----------RRELCRHCGRCVDV 94

Query: 113 CPVDAIVEGPNFEFATETRQELYYDK 138
           C  +A+V        +E   E+  DK
Sbjct: 95  CYAEALVMTGKHMTVSEVMDEVMKDK 120


>gi|331270381|ref|YP_004396873.1| Fe-hydrogenase large subunit family protein [Clostridium botulinum
           BKT015925]
 gi|329126931|gb|AEB76876.1| Fe-hydrogenase large subunit family protein [Clostridium botulinum
           BKT015925]
          Length = 494

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 7/69 (10%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGT-------RRTVRYDIDMIKCIYCGLC 109
              ++ C  C +C+ +CP  AI+    P                 R  I   +CI CG C
Sbjct: 134 YINQDVCRECGMCKQVCPYNAISEVMRPCKTACPTGAICISPEDRRAVIKDEECISCGAC 193

Query: 110 QEACPVDAI 118
            +ACP  AI
Sbjct: 194 MKACPFGAI 202


>gi|294341780|emb|CAZ90209.1| Dihydropyrimidine dehydrogenase [Thiomonas sp. 3As]
          Length = 438

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 5/71 (7%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    +  CI C  C   C     + ++     DG RR   + +    C+ 
Sbjct: 330 KYLNLNHISKAVIDQALCIQCGRCHIACED--TSHQAITATVDGQRR---FVVKEEDCVG 384

Query: 106 CGLCQEACPVD 116
           C LC   CPV 
Sbjct: 385 CNLCVNVCPVP 395


>gi|289450210|ref|YP_003474936.1| pyruvate synthase [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289184757|gb|ADC91182.1| pyruvate synthase [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 1182

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/132 (21%), Positives = 45/132 (34%), Gaps = 19/132 (14%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAI---------------TIESGPRCHDGTRR 92
           RG      +    E CI C  C  +CP   I               T+ +          
Sbjct: 677 RGIAVDVPHWI-PENCIQCNQCSYVCPHGVIRPFLVTEEEAAKAPATMTTIKGTKPYDGY 735

Query: 93  TVRYDIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATETRQELYYDKERLLNNGDRWES 150
                  ++ C  CG C + CP    A+V  P  E   ++ +   Y  E++    +  +S
Sbjct: 736 KFIIQPSVLDCTGCGSCAQVCPAKNKALVMQPIGENMQQS-EHWTYLTEKVTKKPNPMKS 794

Query: 151 EIVRNIVTDSPY 162
            IV+    + PY
Sbjct: 795 NIVKGTQFNMPY 806


>gi|284998328|ref|YP_003420096.1| ABC transporter related protein [Sulfolobus islandicus L.D.8.5]
 gi|284446224|gb|ADB87726.1| ABC transporter related protein [Sulfolobus islandicus L.D.8.5]
          Length = 602

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 23/76 (30%), Gaps = 5/76 (6%)

Query: 47  FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
           F     +       ++C     C   CP        G           +  I    CI C
Sbjct: 2   FVRVAVINYDFCKPDKCNL--ECINFCPVD---RSGGKAIELSDIVKGKPVIYEETCIGC 56

Query: 107 GLCQEACPVDAIVEGP 122
           G+C + CP +AI    
Sbjct: 57  GICVKKCPYEAISIVN 72


>gi|270261663|ref|ZP_06189936.1| transporter [Serratia odorifera 4Rx13]
 gi|270045147|gb|EFA18238.1| transporter [Serratia odorifera 4Rx13]
          Length = 190

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 24/84 (28%), Gaps = 10/84 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E          E   +     E  CI C  C   CP  AI   +             + +
Sbjct: 91  EPQPLGSEAAAEPVRQVAYIDEANCIGCTKCIQACPVDAIVGAT----------RAMHTV 140

Query: 99  DMIKCIYCGLCQEACPVDAIVEGP 122
               C  C LC   CP D I   P
Sbjct: 141 ITDLCTGCDLCVAPCPTDCIEMKP 164


>gi|52843076|ref|YP_096875.1| iron-sulfur cluster binding protein [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52630187|gb|AAU28928.1| iron-sulfur cluster binding protein [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 204

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 13/93 (13%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C   CP  AI   S           + + I   +C  CGLC + CPVD I  
Sbjct: 82  DECIGCTKCIKACPVDAIIGSSK----------LMHAIITHECTGCGLCVDPCPVDCIEM 131

Query: 121 GPNFEFATETRQ--ELYYDKERLLNNGDRWESE 151
                 A   +      Y+ +++    D  E +
Sbjct: 132 VS-LPAAGYDKDLARQRYNAKQMRQLRDEHEKQ 163



 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/35 (42%), Positives = 17/35 (48%)

Query: 84  PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               D TR      I   +CI C  C +ACPVDAI
Sbjct: 65  KEAIDNTRPPSVAAIKEDECIGCTKCIKACPVDAI 99


>gi|89895694|ref|YP_519181.1| hypothetical protein DSY2948 [Desulfitobacterium hafniense Y51]
 gi|89335142|dbj|BAE84737.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 290

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 9/80 (11%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G     R    +++CI C LC+A+CPA+AI +          R+     +D   C YCG 
Sbjct: 152 GIKGGVRPSWQQDQCIYCGLCQAVCPAKAIEV---------HRQEETLSLDSQLCTYCGK 202

Query: 109 CQEACPVDAIVEGPNFEFAT 128
           C ++CP  A      F  + 
Sbjct: 203 CVKSCPTSAWEGERGFLLSF 222



 Score = 40.5 bits (93), Expect = 0.074,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 3/53 (5%)

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           C    +  E       G  R         +CIYCGLCQ  CP  AI      E
Sbjct: 139 CGNNCLKAEENDLGIKGGVRPSWQQ---DQCIYCGLCQAVCPAKAIEVHRQEE 188


>gi|146278885|ref|YP_001169044.1| formate dehydrogenase, alpha subunit [Rhodobacter sphaeroides ATCC
           17025]
 gi|145557126|gb|ABP71739.1| formate dehydrogenase, alpha subunit [Rhodobacter sphaeroides ATCC
           17025]
          Length = 960

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 29/92 (31%), Gaps = 4/92 (4%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDID 99
                 + +   +     +CI C  C   C       A+TIE        +         
Sbjct: 162 PQWMAKDESNPYFTYDPSKCIVCSRCVRACEEVQGTFALTIEGRGFDSRVSAGMASDSFL 221

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
              C+ CG C +ACP   + E    E  T  R
Sbjct: 222 TSDCVSCGACVQACPTATLQEKSVIEIGTPER 253


>gi|70995273|ref|XP_752397.1| RNase L inhibitor of the ABC superfamily [Aspergillus fumigatus
           Af293]
 gi|66850032|gb|EAL90359.1| RNase L inhibitor of the ABC superfamily, putative [Aspergillus
           fumigatus Af293]
 gi|159131151|gb|EDP56264.1| RNase L inhibitor of the ABC superfamily, putative [Aspergillus
           fumigatus A1163]
          Length = 703

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 1/76 (1%)

Query: 47  FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
           +RG  A         +C   K C   C      + +G  C + T  +    I    CI C
Sbjct: 18  YRGRVAFAYPDTFVPQCKP-KKCRQECKKSCPVVRTGKLCIEVTPESKIAFISERLCIGC 76

Query: 107 GLCQEACPVDAIVEGP 122
           G+C + CP  AI    
Sbjct: 77  GICPKKCPFGAIHIIN 92


>gi|330508937|ref|YP_004385365.1| formate dehydrogenase subunit alpha [Methanosaeta concilii GP-6]
 gi|328929745|gb|AEB69547.1| formate dehydrogenase, alpha subunit [Methanosaeta concilii GP-6]
          Length = 917

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 26/80 (32%), Gaps = 3/80 (3%)

Query: 47  FRGEHALR--RYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIKC 103
           FR    LR   +      CI C  C  +C   + + I                 +    C
Sbjct: 156 FRDMPVLREPFFDRNYNLCIMCSRCIRMCDEVRGLGILFNNPDFHRNHWIGPESLQEADC 215

Query: 104 IYCGLCQEACPVDAIVEGPN 123
            +CG C +ACP  A+     
Sbjct: 216 KFCGACVDACPTGALFIRSE 235


>gi|317054863|ref|YP_004103330.1| electron transport complex, RnfABCDGE type subunit C [Ruminococcus
           albus 7]
 gi|315447132|gb|ADU20696.1| electron transport complex, RnfABCDGE type, C subunit [Ruminococcus
           albus 7]
          Length = 420

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 1/60 (1%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
             P  +  CI C  C   CPA+ + +          +  +   +    CI CG C   CP
Sbjct: 338 NDPQQKTNCIKCGRCAHACPAKLMPMRIEKALKRRNKAALE-RLRPDLCIKCGACTYVCP 396


>gi|291523667|emb|CBK81960.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric
           [Coprococcus catus GD/7]
          Length = 1170

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/124 (14%), Positives = 37/124 (29%), Gaps = 30/124 (24%)

Query: 58  NGEERCIACKLCEAICPA----------------QAITIESGPRCHDGTRRTVRYDIDMI 101
               +CI C  C  +CP                  A       + +   +   +  +  +
Sbjct: 684 WDAAKCIQCNQCSYVCPHATIRPVLLTDEEAAAAPANFGAVPGKANLAGKYQFKMQVSPL 743

Query: 102 KCIYCGLCQEACPVDAIVEGP-----------NFEFATETRQELYYDKERLLNNGDRWES 150
            C+ CG C   CP  A+   P            +  A   ++      ++    G ++E 
Sbjct: 744 DCLGCGSCANICPTKALEMVPLGTQLDEAPNWEYAVALPQKEN---PMDKYTVKGSQFEK 800

Query: 151 EIVR 154
            ++ 
Sbjct: 801 PLLE 804


>gi|238796521|ref|ZP_04640029.1| Electron transport complex protein rnfC [Yersinia mollaretii ATCC
           43969]
 gi|238719726|gb|EEQ11534.1| Electron transport complex protein rnfC [Yersinia mollaretii ATCC
           43969]
          Length = 622

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 3/103 (2%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C LC   CPA  +  +       G       + ++  CI CG C   CP   I  
Sbjct: 342 QSCIRCGLCVDACPAG-LLPQQLYWFSRGEEHEKARNHNLFDCIECGACAYVCP-SNIPL 399

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
              +       + L  +  R      R+E++  R +  +   R
Sbjct: 400 VQYYRQEKAEIRALDQESARAAEAKARFEAKQAR-LAREKLAR 441


>gi|254502108|ref|ZP_05114259.1| formate dehydrogenase, alpha subunit [Labrenzia alexandrii DFL-11]
 gi|222438179|gb|EEE44858.1| formate dehydrogenase, alpha subunit [Labrenzia alexandrii DFL-11]
          Length = 922

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 5/78 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114
             + CIAC LCE  C  +    +       G+  T  +D    + +  C+ CG C  ACP
Sbjct: 143 NLDACIACNLCERACR-EVQVNDVIGMADRGSHTTPVFDLADPMGLSTCVACGECVSACP 201

Query: 115 VDAIVEGPNFEFATETRQ 132
             A++E    +   +TR+
Sbjct: 202 TGALMEKSLLDADAKTRE 219


>gi|170024243|ref|YP_001720748.1| electron transport complex protein RnfC [Yersinia
           pseudotuberculosis YPIII]
 gi|226735459|sp|B1JKN4|RNFC_YERPY RecName: Full=Electron transport complex protein rnfC
 gi|169750777|gb|ACA68295.1| electron transport complex, RnfABCDGE type, C subunit [Yersinia
           pseudotuberculosis YPIII]
          Length = 698

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 3/103 (2%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C LC   CPA  +  +       G       + ++  CI CG C   CP   I  
Sbjct: 375 QSCIRCGLCVDACPAG-LLPQQLYWFSRGEEHEKARNHNLFDCIECGACAYVCP-SNIPL 432

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
              +       + L  +  R      R+E++  R +  +   R
Sbjct: 433 VQYYRQEKAEIRALDQESARAAEAKARFEAKQAR-LAREKLAR 474


>gi|153813652|ref|ZP_01966320.1| hypothetical protein RUMOBE_04075 [Ruminococcus obeum ATCC 29174]
 gi|149830268|gb|EDM85361.1| hypothetical protein RUMOBE_04075 [Ruminococcus obeum ATCC 29174]
          Length = 290

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 11/58 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + CI C +CE  C  +AI+ +                ID  KC YCG C ++CPVDA 
Sbjct: 167 DTCIHCGVCEKACREEAISFQDDKLI-----------IDNEKCNYCGRCAKSCPVDAW 213



 Score = 34.3 bits (77), Expect = 6.1,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 3/51 (5%)

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           C    +  E       G  +          CI+CG+C++AC  +AI    +
Sbjct: 142 CQNNCLKAEENDVGIKGAAQISW---KEDTCIHCGVCEKACREEAISFQDD 189


>gi|149375891|ref|ZP_01893658.1| iron-sulfur cluster-binding protein, putative [Marinobacter
           algicola DG893]
 gi|149359771|gb|EDM48228.1| iron-sulfur cluster-binding protein, putative [Marinobacter
           algicola DG893]
          Length = 659

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 9/71 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++C  C  C ++CP  A+                        C+ CG+C+  CP  AI
Sbjct: 511 DSDKCTLCLACVSLCPTGALGDHPD---------RPEVQFTENACVQCGVCESTCPETAI 561

Query: 119 VEGPNFEFATE 129
              P  + + +
Sbjct: 562 NLKPQLDLSKD 572



 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 18/55 (32%), Gaps = 11/55 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           C  C  +CP +AI                   ID   C  CG C   CP  AI  
Sbjct: 291 CTRCLDVCPTEAIFSFGD-----------HVQIDSDICAGCGSCAAVCPTSAITM 334



 Score = 34.7 bits (78), Expect = 4.1,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
             A A  +E+      G       +ID  KC  C  C   CP  A+ + P+
Sbjct: 486 VSAMANGVEAPIPLPQGAPYGAI-EIDSDKCTLCLACVSLCPTGALGDHPD 535


>gi|145598188|ref|YP_001162264.1| electron transport complex protein RnfC [Yersinia pestis Pestoides
           F]
 gi|145209884|gb|ABP39291.1| iron-sulfur binding NADH dehydrogenase [Yersinia pestis Pestoides
           F]
          Length = 581

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 3/103 (2%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C LC   CPA  +  +       G       + ++  CI CG C   CP   I  
Sbjct: 375 QSCIRCGLCVDACPAG-LLPQQLYWFSRGEEHEKARNHNLFDCIECGACAYVCP-SNIPL 432

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
              +       + L  +  R      R+E++  R +  +   R
Sbjct: 433 VQYYRQEKAEIRALDQESARAAEAKARFEAKQAR-LAREKLAR 474


>gi|118443739|ref|YP_877665.1| ferredoxin [Clostridium novyi NT]
 gi|118134195|gb|ABK61239.1| polyferredoxin [Clostridium novyi NT]
          Length = 294

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQEAC 113
            ++ C+AC  C + CP   I +    +      +   R     +I    CI CGLC +AC
Sbjct: 167 NKDNCVACGACVSTCPKNIIELVPKKQLVIVSCNSHDRGLDVKNICSTGCIGCGLCAKAC 226

Query: 114 PVDAIVEGPNFEFATETR 131
           P +AI    N      ++
Sbjct: 227 PKEAITMENNLPVIDYSK 244



 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/90 (27%), Positives = 32/90 (35%), Gaps = 11/90 (12%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
                  P ++         +  L         CI C LC   CP +AIT+E+       
Sbjct: 183 KNIIELVPKKQLVIVSCNSHDRGLDVKNICSTGCIGCGLCAKACPKEAITMENNLPV--- 239

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
                   ID  KC+ CGLC   CP  AI 
Sbjct: 240 --------IDYSKCVNCGLCAMKCPTKAIQ 261


>gi|22125975|ref|NP_669398.1| electron transport complex protein RnfC [Yersinia pestis KIM 10]
 gi|108811874|ref|YP_647641.1| electron transport complex protein RnfC [Yersinia pestis Nepal516]
 gi|166210950|ref|ZP_02236985.1| electron transport complex protein RnfC [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167424927|ref|ZP_02316680.1| electron transport complex protein RnfC [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229894929|ref|ZP_04510107.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis Pestoides A]
 gi|229902176|ref|ZP_04517297.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis Nepal516]
 gi|270490649|ref|ZP_06207723.1| electron transport complex, RnfABCDGE type, C subunit [Yersinia
           pestis KIM D27]
 gi|123073407|sp|Q1CIY9|RNFC_YERPN RecName: Full=Electron transport complex protein rnfC
 gi|21958919|gb|AAM85649.1|AE013811_2 putative membrane protein [Yersinia pestis KIM 10]
 gi|108775522|gb|ABG18041.1| iron-sulfur binding NADH dehydrogenase [Yersinia pestis Nepal516]
 gi|166208130|gb|EDR52610.1| electron transport complex protein RnfC [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167056114|gb|EDR65892.1| electron transport complex protein RnfC [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229681072|gb|EEO77167.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis Nepal516]
 gi|229702024|gb|EEO90045.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis Pestoides A]
 gi|270339153|gb|EFA49930.1| electron transport complex, RnfABCDGE type, C subunit [Yersinia
           pestis KIM D27]
 gi|320014908|gb|ADV98479.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 659

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 3/103 (2%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C LC   CPA  +  +       G       + ++  CI CG C   CP   I  
Sbjct: 375 QSCIRCGLCVDACPAG-LLPQQLYWFSRGEEHEKARNHNLFDCIECGACAYVCP-SNIPL 432

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
              +       + L  +  R      R+E++  R +  +   R
Sbjct: 433 VQYYRQEKAEIRALDQESARAAEAKARFEAKQAR-LAREKLAR 474


>gi|45441842|ref|NP_993381.1| electron transport complex protein RnfC [Yersinia pestis biovar
           Microtus str. 91001]
 gi|45436704|gb|AAS62258.1| putative iron-sulfur binding NADH dehydrogenase [Yersinia pestis
           biovar Microtus str. 91001]
          Length = 659

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 3/103 (2%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C LC   CPA  +  +       G       + ++  CI CG C   CP   I  
Sbjct: 375 QSCIRCGLCVDACPAG-LLPQQLYWFSRGEEHEKARNHNLFDCIECGACAYVCP-SNIPL 432

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
              +       + L  +  R      R+E++  R +  +   R
Sbjct: 433 VQYYRQEKAEIRALDQESARAAEAKARFEAKQAR-LAREKLAR 474


>gi|51596491|ref|YP_070682.1| electron transport complex protein RnfC [Yersinia
           pseudotuberculosis IP 32953]
 gi|186895541|ref|YP_001872653.1| electron transport complex protein RnfC [Yersinia
           pseudotuberculosis PB1/+]
 gi|226735457|sp|B2K4K0|RNFC_YERPB RecName: Full=Electron transport complex protein rnfC
 gi|51589773|emb|CAH21403.1| putative iron-sulfur binding NADH dehydrogenase [Yersinia
           pseudotuberculosis IP 32953]
 gi|186698567|gb|ACC89196.1| electron transport complex, RnfABCDGE type, C subunit [Yersinia
           pseudotuberculosis PB1/+]
          Length = 659

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 3/103 (2%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C LC   CPA  +  +       G       + ++  CI CG C   CP   I  
Sbjct: 375 QSCIRCGLCVDACPAG-LLPQQLYWFSRGEEHEKARNHNLFDCIECGACAYVCP-SNIPL 432

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
              +       + L  +  R      R+E++  R +  +   R
Sbjct: 433 VQYYRQEKAEIRALDQESARAAEAKARFEAKQAR-LAREKLAR 474


>gi|162421102|ref|YP_001606696.1| electron transport complex protein RnfC [Yersinia pestis Angola]
 gi|226735458|sp|A9R8U6|RNFC_YERPG RecName: Full=Electron transport complex protein rnfC
 gi|162353917|gb|ABX87865.1| electron transport complex protein RnfC [Yersinia pestis Angola]
          Length = 659

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 3/103 (2%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C LC   CPA  +  +       G       + ++  CI CG C   CP   I  
Sbjct: 375 QSCIRCGLCVDACPAG-LLPQQLYWFSRGEEHEKARNHNLFDCIECGACAYVCP-SNIPL 432

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
              +       + L  +  R      R+E++  R +  +   R
Sbjct: 433 VQYYRQEKAEIRALDQESARAAEAKARFEAKQAR-LAREKLAR 474


>gi|153947990|ref|YP_001400871.1| electron transport complex protein RnfC [Yersinia
           pseudotuberculosis IP 31758]
 gi|166991049|sp|A7FHZ3|RNFC_YERP3 RecName: Full=Electron transport complex protein rnfC
 gi|152959485|gb|ABS46946.1| electron transport complex, RnfABCDGE type, C subunit [Yersinia
           pseudotuberculosis IP 31758]
          Length = 698

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 3/103 (2%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C LC   CPA  +  +       G       + ++  CI CG C   CP   I  
Sbjct: 375 QSCIRCGLCVDACPAG-LLPQQLYWFSRGEEHEKARNHNLFDCIECGACAYVCP-SNIPL 432

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
              +       + L  +  R      R+E++  R +  +   R
Sbjct: 433 VQYYRQEKAEIRALDQESARAAEAKARFEAKQAR-LAREKLAR 474


>gi|108807598|ref|YP_651514.1| electron transport complex protein RnfC [Yersinia pestis Antiqua]
 gi|149365837|ref|ZP_01887872.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis CA88-4125]
 gi|165927361|ref|ZP_02223193.1| electron transport complex protein RnfC [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165938230|ref|ZP_02226789.1| electron transport complex protein RnfC [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166010764|ref|ZP_02231662.1| electron transport complex protein RnfC [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|167400753|ref|ZP_02306259.1| electron transport complex protein RnfC [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167420227|ref|ZP_02311980.1| electron transport complex protein RnfC [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167470481|ref|ZP_02335185.1| electron transport complex protein RnfC [Yersinia pestis FV-1]
 gi|218929340|ref|YP_002347215.1| electron transport complex protein RnfC [Yersinia pestis CO92]
 gi|229897672|ref|ZP_04512828.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229898317|ref|ZP_04513464.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|294503723|ref|YP_003567785.1| cell envelope integrity inner membrane protein TolA [Yersinia
           pestis Z176003]
 gi|122979618|sp|Q1C7K3|RNFC_YERPA RecName: Full=Electron transport complex protein rnfC
 gi|108779511|gb|ABG13569.1| putative iron-sulfur binding NADH dehydrogenase [Yersinia pestis
           Antiqua]
 gi|115347951|emb|CAL20873.1| putative iron-sulfur binding NADH dehydrogenase [Yersinia pestis
           CO92]
 gi|149292250|gb|EDM42324.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis CA88-4125]
 gi|165913891|gb|EDR32509.1| electron transport complex protein RnfC [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165920627|gb|EDR37875.1| electron transport complex protein RnfC [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165990466|gb|EDR42767.1| electron transport complex protein RnfC [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166961922|gb|EDR57943.1| electron transport complex protein RnfC [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167049606|gb|EDR61014.1| electron transport complex protein RnfC [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|229688607|gb|EEO80676.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229694009|gb|EEO84058.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|262362157|gb|ACY58878.1| electron transport complex protein RnfC [Yersinia pestis D106004]
 gi|262365490|gb|ACY62047.1| electron transport complex protein RnfC [Yersinia pestis D182038]
 gi|294354182|gb|ADE64523.1| cell envelope integrity inner membrane protein TolA [Yersinia
           pestis Z176003]
          Length = 620

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 3/103 (2%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C LC   CPA  +  +       G       + ++  CI CG C   CP   I  
Sbjct: 375 QSCIRCGLCVDACPAG-LLPQQLYWFSRGEEHEKARNHNLFDCIECGACAYVCP-SNIPL 432

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
              +       + L  +  R      R+E++  R +  +   R
Sbjct: 433 VQYYRQEKAEIRALDQESARAAEAKARFEAKQAR-LAREKLAR 474


>gi|330720452|gb|EGG98761.1| Electron transport complex protein RnfB [gamma proteobacterium
           IMCC2047]
          Length = 218

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 26/81 (32%), Gaps = 10/81 (12%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
                   E   R     E  CI C  C   CP  AI   +             + +   
Sbjct: 93  PLDEEHGEEKGKRVALIREAECIGCTKCIQACPMDAILGAAK----------HMHTVIAD 142

Query: 102 KCIYCGLCQEACPVDAIVEGP 122
           +C  C LC E CPVD I   P
Sbjct: 143 ECTGCDLCVEPCPVDCIDMVP 163


>gi|323525306|ref|YP_004227459.1| RnfABCDGE type electron transport complex subunit B [Burkholderia
           sp. CCGE1001]
 gi|323382308|gb|ADX54399.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           sp. CCGE1001]
          Length = 302

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 23/64 (35%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ CI C LC   CP  AI                 + +    C  C LC   CPVD I
Sbjct: 85  EEQICIGCTLCMQACPVDAIVGAPK----------HMHTVVAELCTGCDLCVPPCPVDCI 134

Query: 119 VEGP 122
              P
Sbjct: 135 SMPP 138



 Score = 37.0 bits (84), Expect = 0.85,   Method: Composition-based stats.
 Identities = 15/31 (48%), Positives = 17/31 (54%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
           I+   CI C LC +ACPVDAIV  P      
Sbjct: 84  IEEQICIGCTLCMQACPVDAIVGAPKHMHTV 114


>gi|242279981|ref|YP_002992110.1| cobyrinic acid ac-diamide synthase [Desulfovibrio salexigens DSM
           2638]
 gi|242122875|gb|ACS80571.1| Cobyrinic acid ac-diamide synthase [Desulfovibrio salexigens DSM
           2638]
          Length = 285

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 14/64 (21%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E C  C LC   C   AI+ +              + +   KC  CG+C   CPV+A+
Sbjct: 64  NPELCTQCGLCAEHCKFDAISKD--------------FAVMPEKCEGCGVCSYVCPVEAV 109

Query: 119 VEGP 122
              P
Sbjct: 110 STAP 113



 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 15/38 (39%)

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               R         R +I+   C  CGLC E C  DAI
Sbjct: 46  HPEIRDTHDFFSGERPEINPELCTQCGLCAEHCKFDAI 83


>gi|254976913|ref|ZP_05273385.1| hydrogenase [Clostridium difficile QCD-66c26]
 gi|255094299|ref|ZP_05323777.1| hydrogenase [Clostridium difficile CIP 107932]
 gi|255102481|ref|ZP_05331458.1| hydrogenase [Clostridium difficile QCD-63q42]
 gi|255308386|ref|ZP_05352557.1| hydrogenase [Clostridium difficile ATCC 43255]
 gi|255316053|ref|ZP_05357636.1| hydrogenase [Clostridium difficile QCD-76w55]
 gi|255518710|ref|ZP_05386386.1| hydrogenase [Clostridium difficile QCD-97b34]
 gi|255651832|ref|ZP_05398734.1| hydrogenase [Clostridium difficile QCD-37x79]
 gi|255657272|ref|ZP_05402681.1| hydrogenase [Clostridium difficile QCD-23m63]
 gi|260684858|ref|YP_003216143.1| hydrogenase [Clostridium difficile CD196]
 gi|260688516|ref|YP_003219650.1| hydrogenase [Clostridium difficile R20291]
 gi|296451875|ref|ZP_06893593.1| ferredoxin hydrogenase [Clostridium difficile NAP08]
 gi|296879729|ref|ZP_06903704.1| ferredoxin hydrogenase [Clostridium difficile NAP07]
 gi|306521619|ref|ZP_07407966.1| hydrogenase [Clostridium difficile QCD-32g58]
 gi|260211021|emb|CBA66340.1| hydrogenase [Clostridium difficile CD196]
 gi|260214533|emb|CBE07055.1| hydrogenase [Clostridium difficile R20291]
 gi|296259292|gb|EFH06169.1| ferredoxin hydrogenase [Clostridium difficile NAP08]
 gi|296429318|gb|EFH15190.1| ferredoxin hydrogenase [Clostridium difficile NAP07]
          Length = 458

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 10/80 (12%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                 ++ C  C+ C  +CP  AI  E G              I++ +C+ CG C + C
Sbjct: 1   MIINIDKDLCTGCRECSKVCPVNAIEGEEGKPQE----------INLDRCVMCGQCVQTC 50

Query: 114 PVDAIVEGPNFEFATETRQE 133
              A V    FEF  E +QE
Sbjct: 51  KSYASVIDEGFEFLQEKKQE 70


>gi|114563959|ref|YP_751473.1| FAD linked oxidase domain-containing protein [Shewanella
           frigidimarina NCIMB 400]
 gi|114335252|gb|ABI72634.1| FAD linked oxidase domain protein [Shewanella frigidimarina NCIMB
           400]
          Length = 934

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 9/91 (9%)

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           +     I  +         +     D  + KCI CG C++ CP  A+   P    A   R
Sbjct: 511 LLNPGVILNDDTLVHVKNIKPCPVVDDFVDKCIECGFCEKTCPTSALNFSPRQRIAVL-R 569

Query: 132 QELYYDKERLLNNGDRWESEIVRNIVTDSPY 162
           +      ERL  +GD+   +    +   S Y
Sbjct: 570 E-----IERLEQSGDK---KAAAEMRASSKY 592



 Score = 37.8 bits (86), Expect = 0.51,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 27/76 (35%), Gaps = 18/76 (23%)

Query: 57  PNGEERCIACKLCEAICPAQAITIES-----------------GPRCHDGTRRTVRYDID 99
            +  ++CI C  CE  CP  A+                       +     R + +YD+ 
Sbjct: 536 DDFVDKCIECGFCEKTCPTSALNFSPRQRIAVLREIERLEQSGDKKAAAEMRASSKYDVI 595

Query: 100 MIKCIYCGLCQEACPV 115
              C  C LC  ACPV
Sbjct: 596 -DTCAACQLCTIACPV 610


>gi|317484980|ref|ZP_07943864.1| indolepyruvate ferredoxin oxidoreductase [Bilophila wadsworthia
           3_1_6]
 gi|316923785|gb|EFV44987.1| indolepyruvate ferredoxin oxidoreductase [Bilophila wadsworthia
           3_1_6]
          Length = 622

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 11/87 (12%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            ++    E      R   +     +    ERC+ C  C       A  +  G        
Sbjct: 543 VSVIICREPCPLHMRRLSKAKKPVFGIDGERCVNCHTCVDTFGCPAFQLRDGKVS----- 597

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAI 118
                 ID ++CI C +C + CP +AI
Sbjct: 598 ------IDPVQCIGCAVCAQVCPNNAI 618


>gi|302391035|ref|YP_003826855.1| hypothetical protein Acear_0240 [Acetohalobium arabaticum DSM 5501]
 gi|302203112|gb|ADL11790.1| protein of unknown function DUF362 [Acetohalobium arabaticum DSM
           5501]
          Length = 385

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 7/66 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++ C  C+ C   CP Q I  +               +ID  +C  C  CQE CP DAI
Sbjct: 318 DQQSCTQCRTCLDSCPQQVIIEQQDGN-------NTYLEIDESECSKCLCCQEVCPFDAI 370

Query: 119 VEGPNF 124
               NF
Sbjct: 371 ELKENF 376


>gi|331647798|ref|ZP_08348890.1| putative oxidoreductase [Escherichia coli M605]
 gi|281179239|dbj|BAI55569.1| putative dihydropyrimidine dehydrogenase [Escherichia coli SE15]
 gi|330911980|gb|EGH40490.1| hypothetical protein ECAA86_02352 [Escherichia coli AA86]
 gi|331043522|gb|EGI15660.1| putative oxidoreductase [Escherichia coli M605]
          Length = 411

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +       ++C+ C  C   C         G +  + + +T     +  K
Sbjct: 324 VPAEDLDRSYIVYPHINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 378 CVGCLLCGHVCPVGCIDLG 396


>gi|257061716|ref|YP_003139604.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Cyanothece sp. PCC
           8802]
 gi|256591882|gb|ACV02769.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Cyanothece sp. PCC
           8802]
          Length = 1212

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/105 (17%), Positives = 31/105 (29%), Gaps = 26/105 (24%)

Query: 58  NGEERCIACKLCEAICPAQA----------------ITIESGPRCHDGTRRTVRYDID-- 99
              + C+ C  C  +CP                       +  +  D  +  +++ I   
Sbjct: 688 WDPDVCVQCGKCVLVCPHAVIRSKVYEETALVNAPETFKTASAKDLDWKKTQLKFTIQVA 747

Query: 100 MIKCIYCGLCQEACPV--------DAIVEGPNFEFATETRQELYY 136
              C  CG+C + CP          AI   P      + R+   Y
Sbjct: 748 AEDCTGCGVCVDVCPAKNKSQPKLKAINMAPQLPIRDQERENWDY 792


>gi|255013479|ref|ZP_05285605.1| dihydropyrimidine dehydrogenase [Bacteroides sp. 2_1_7]
          Length = 452

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 21/80 (26%), Gaps = 7/80 (8%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
                P       + R       C+ C  C   C                     +  ID
Sbjct: 380 PNIVPPEKLERTQIHRPTVDNSLCLGCGRCFVSCNDG-------GHQAIRFTSMRKPVID 432

Query: 100 MIKCIYCGLCQEACPVDAIV 119
             KC+ C LC   CP  AI 
Sbjct: 433 EQKCVGCHLCALVCPTFAIH 452


>gi|239626662|ref|ZP_04669693.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239516808|gb|EEQ56674.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 1178

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 21/81 (25%), Gaps = 15/81 (18%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG        N  + CI C  C  +CP               +A                
Sbjct: 680 RGIAVKVPVWN-PDNCIQCNFCAYVCPHAVIRPVAMTADEAAKAPADMKVKDMTGMPGYK 738

Query: 94  VRYDIDMIKCIYCGLCQEACP 114
               +  + C  CG C   CP
Sbjct: 739 FAITVSALDCTGCGSCANVCP 759


>gi|170682869|ref|YP_001744341.1| dihydropyrimidine dehydrogenase [Escherichia coli SMS-3-5]
 gi|170520587|gb|ACB18765.1| dihydroorotate dehydrogenase family protein [Escherichia coli
           SMS-3-5]
          Length = 411

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +       ++C+ C  C   C         G +  + + +T     +  K
Sbjct: 324 VPAEDLDRSYIVYPHINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 378 CVGCLLCGHVCPVGCIDLG 396


>gi|327400436|ref|YP_004341275.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
 gi|327315944|gb|AEA46560.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
          Length = 636

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 9/60 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ERC  CKLC A+CP +AI+ +                ID   C  CG+C  ACPV AI
Sbjct: 563 DGERCSGCKLCIALCPYRAISYDEE---------RGVCVIDETFCKGCGICVPACPVGAI 613



 Score = 37.4 bits (85), Expect = 0.62,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)

Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
            KC+ CG+C EACPV       ++E+  + R  +Y 
Sbjct: 240 DKCVGCGMCTEACPVRVA---NDYEYGMKERGAIYL 272



 Score = 37.0 bits (84), Expect = 0.79,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 25/77 (32%), Gaps = 10/77 (12%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR-------TVRYDIDMIKCIY---C 106
               ++C+ C +C   CP +            G               ID   C+Y   C
Sbjct: 236 YVDADKCVGCGMCTEACPVRVANDYEYGMKERGAIYLPYPGVLPNVPVIDRENCLYTRGC 295

Query: 107 GLCQEACPVDAIVEGPN 123
             C E+C  +AI    N
Sbjct: 296 QKCIESCAFEAINFEDN 312


>gi|325959023|ref|YP_004290489.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
 gi|325330455|gb|ADZ09517.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
          Length = 342

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 35/112 (31%), Gaps = 11/112 (9%)

Query: 10  FLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69
             +L EF        + + +         E      RFR    +      +E CIAC  C
Sbjct: 5   IWYLYEFAR------KSWAENFAAAKSDKEIMDAPDRFRNFPEVH-----KEYCIACGAC 53

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            A CPA            +         I+   CI CG C E CP D     
Sbjct: 54  TAACPAPMAIKLVRDEDSEHEDGFTYPVINNRGCIRCGFCAEVCPTDPKTLT 105



 Score = 38.9 bits (89), Expect = 0.21,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 10/66 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           LR     +++C  C+LC   CP+ AI   S                +  KC+ C +C + 
Sbjct: 256 LRVITWDKDKCTNCRLCVKECPSGAIKYTSEEGVVR----------NPDKCLRCSICYQT 305

Query: 113 CPVDAI 118
           CP  AI
Sbjct: 306 CPFGAI 311



 Score = 38.2 bits (87), Expect = 0.38,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 10/82 (12%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
              +++   +  CI CK C   C       E   +            ID  KCI CG C 
Sbjct: 120 PVDKKFVIDDYLCIRCKKCMKTCKVGDAIFEEDNKIV----------IDQSKCISCGECL 169

Query: 111 EACPVDAIVEGPNFEFATETRQ 132
           + CPV   ++G +     E ++
Sbjct: 170 KTCPVKGAIKGIHISHVEEQKE 191



 Score = 36.2 bits (82), Expect = 1.3,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 26/77 (33%), Gaps = 6/77 (7%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT-----RRTVRYDIDMIKCIYCG 107
                     CI C  C  +CP    T+  G                ++ ID   CI C 
Sbjct: 77  FTYPVINNRGCIRCGFCAEVCPTDPKTLTCGENHLIREDFTILPVDKKFVIDDYLCIRCK 136

Query: 108 LCQEACPV-DAIVEGPN 123
            C + C V DAI E  N
Sbjct: 137 KCMKTCKVGDAIFEEDN 153


>gi|319790804|ref|YP_004152444.1| benzoyL-CoA oxygenase/reductase, boxa protein [Variovorax paradoxus
           EPS]
 gi|315593267|gb|ADU34333.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Variovorax paradoxus
           EPS]
          Length = 429

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 11/67 (16%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            ++++    E CI C  CEA CP  AIT +              Y +    C  C  C  
Sbjct: 9   VIKQHLIDPEICIRCNTCEATCPVNAITHDDN-----------NYVVRADVCNGCMACIS 57

Query: 112 ACPVDAI 118
            CP  +I
Sbjct: 58  PCPTGSI 64



 Score = 38.2 bits (87), Expect = 0.37,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 14/26 (53%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPN 123
           ID   CI C  C+  CPV+AI    N
Sbjct: 15  IDPEICIRCNTCEATCPVNAITHDDN 40


>gi|282857992|ref|ZP_06267193.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Pyramidobacter
           piscolens W5455]
 gi|282584146|gb|EFB89513.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Pyramidobacter
           piscolens W5455]
          Length = 1188

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 31/92 (33%), Gaps = 18/92 (19%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------- 92
           RG        N +++CI C  C  +CP   I       +   R   G             
Sbjct: 683 RGVAVFVPEWN-KDKCIQCNQCSMVCPHATIRPVLLDEDEAARRPAGFETLPVKAPKELA 741

Query: 93  --TVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
               R  +  + C+ CG C + CP  A+   P
Sbjct: 742 GLQFRIQVSPLDCLGCGNCADICPAKALEMKP 773


>gi|242278205|ref|YP_002990334.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfovibrio
           salexigens DSM 2638]
 gi|242121099|gb|ACS78795.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfovibrio
           salexigens DSM 2638]
          Length = 1174

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/138 (18%), Positives = 39/138 (28%), Gaps = 27/138 (19%)

Query: 31  KTTINYPFEKGST---SPRFRGEHALRRYPNGEERCIACKLCEAICPAQA---------- 77
             +   P  +          RG   +       + CI C  C  +CP  A          
Sbjct: 653 PVSAFSPDGRFPMGTSRFEKRGVAIMVPEWI-MDNCIQCNQCSFVCPHSALRPVLVDEEE 711

Query: 78  ------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP--VDAIVEGP-----NF 124
                        +         R  ++ + C  CG C + CP    A+V  P       
Sbjct: 712 MKIAPESFETMEAKGKGMEGLKYRMQVNTLDCQGCGNCADICPAKEKALVMKPLATQTEK 771

Query: 125 EFATETRQELYYDKERLL 142
           E       E+   K+R+L
Sbjct: 772 EVPNYDFSEIVSFKDRIL 789


>gi|229579709|ref|YP_002838108.1| ATPase RIL [Sulfolobus islandicus Y.G.57.14]
 gi|228010424|gb|ACP46186.1| ABC transporter related [Sulfolobus islandicus Y.G.57.14]
          Length = 602

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 23/76 (30%), Gaps = 5/76 (6%)

Query: 47  FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
           F     +       ++C     C   CP        G           +  I    CI C
Sbjct: 2   FVRVAVINYDFCKPDKCNL--ECINFCPVD---RSGGKAIELSDIVKGKPVIYEETCIGC 56

Query: 107 GLCQEACPVDAIVEGP 122
           G+C + CP +AI    
Sbjct: 57  GICVKKCPYEAISIVN 72


>gi|215487368|ref|YP_002329799.1| dihydropyrimidine dehydrogenase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312967440|ref|ZP_07781655.1| uncharacterized protein yeiA [Escherichia coli 2362-75]
 gi|215265440|emb|CAS09841.1| predicted oxidoreductase [Escherichia coli O127:H6 str. E2348/69]
 gi|312287637|gb|EFR15542.1| uncharacterized protein yeiA [Escherichia coli 2362-75]
 gi|320196016|gb|EFW70640.1| dihydropyrimidine dehydrogenase [Escherichia coli WV_060327]
          Length = 411

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +       ++C+ C  C   C         G +  + + +T     +  K
Sbjct: 324 VPAEDLDRSYIVYPHINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 378 CVGCLLCGHVCPVGCIDLG 396


>gi|218960661|ref|YP_001740436.1| putative pyruvate-ferredoxin oxidoreductase (por-like) or
           pyruvate-flavodoxin oxidoreductase (ydbK-like), 4Fe-4S
           domain [Candidatus Cloacamonas acidaminovorans]
 gi|167729318|emb|CAO80229.1| putative pyruvate-ferredoxin oxidoreductase (por-like) or
           pyruvate-flavodoxin oxidoreductase (ydbK-like), 4Fe-4S
           domain [Candidatus Cloacamonas acidaminovorans]
          Length = 1173

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 26/83 (31%), Gaps = 14/83 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTR--------------RTVRYDIDMIK 102
               E CI C  C  +CP  AI  +         +                 +  + +  
Sbjct: 683 HWLPENCIQCNQCSFVCPHSAIRAKLIKEEDLANKPASFNTLKAIGAPGYEYKVQVYIDD 742

Query: 103 CIYCGLCQEACPVDAIVEGPNFE 125
           C  C +C   CP  A+V  P  E
Sbjct: 743 CQSCKVCVNECPKSALVMSPIEE 765


>gi|154505522|ref|ZP_02042260.1| hypothetical protein RUMGNA_03059 [Ruminococcus gnavus ATCC 29149]
 gi|153794180|gb|EDN76600.1| hypothetical protein RUMGNA_03059 [Ruminococcus gnavus ATCC 29149]
          Length = 633

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 30/69 (43%), Gaps = 10/69 (14%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           ALRRY    ERC  C  C   CP  AI+           R    + ID  KCI CG C+ 
Sbjct: 573 ALRRYIISPERCKGCSKCARNCPVGAISG----------RIKEPFVIDNDKCIKCGACES 622

Query: 112 ACPVDAIVE 120
           +C   AI  
Sbjct: 623 SCAFGAIHI 631



 Score = 37.4 bits (85), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 8/62 (12%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
            +              RY I   +C  C  C   CPV AI        +   ++    D 
Sbjct: 560 HVVDKKCVSHTCTALRRYIISPERCKGCSKCARNCPVGAI--------SGRIKEPFVIDN 611

Query: 139 ER 140
           ++
Sbjct: 612 DK 613


>gi|50843353|ref|YP_056580.1| NADH dehydrogenase subunit [Propionibacterium acnes KPA171202]
 gi|289424780|ref|ZP_06426562.1| 4Fe-4S binding domain protein [Propionibacterium acnes SK187]
 gi|289427742|ref|ZP_06429454.1| 4Fe-4S binding domain protein [Propionibacterium acnes J165]
 gi|295131424|ref|YP_003582087.1| 4Fe-4S binding domain protein [Propionibacterium acnes SK137]
 gi|50840955|gb|AAT83622.1| NADH dehydrogenase subunit [Propionibacterium acnes KPA171202]
 gi|289154743|gb|EFD03426.1| 4Fe-4S binding domain protein [Propionibacterium acnes SK187]
 gi|289159233|gb|EFD07425.1| 4Fe-4S binding domain protein [Propionibacterium acnes J165]
 gi|291375515|gb|ADD99369.1| 4Fe-4S binding domain protein [Propionibacterium acnes SK137]
 gi|313763088|gb|EFS34452.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL013PA1]
 gi|313773018|gb|EFS38984.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL074PA1]
 gi|313794095|gb|EFS42117.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL110PA1]
 gi|313802413|gb|EFS43638.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL110PA2]
 gi|313807854|gb|EFS46338.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL087PA2]
 gi|313812140|gb|EFS49854.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL025PA1]
 gi|313816886|gb|EFS54600.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL059PA1]
 gi|313819194|gb|EFS56908.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL046PA2]
 gi|313819767|gb|EFS57481.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL036PA1]
 gi|313823884|gb|EFS61598.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL036PA2]
 gi|313827245|gb|EFS64959.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL063PA1]
 gi|313828425|gb|EFS66139.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL063PA2]
 gi|313831118|gb|EFS68832.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL007PA1]
 gi|313833479|gb|EFS71193.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL056PA1]
 gi|313838113|gb|EFS75827.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL086PA1]
 gi|314914553|gb|EFS78384.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL005PA4]
 gi|314919203|gb|EFS83034.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL050PA1]
 gi|314920637|gb|EFS84468.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL050PA3]
 gi|314925724|gb|EFS89555.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL036PA3]
 gi|314931453|gb|EFS95284.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL067PA1]
 gi|314957013|gb|EFT01119.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL027PA1]
 gi|314957827|gb|EFT01930.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL002PA1]
 gi|314960668|gb|EFT04769.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL002PA2]
 gi|314963376|gb|EFT07476.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL082PA1]
 gi|314969729|gb|EFT13827.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL037PA1]
 gi|314974300|gb|EFT18396.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL053PA1]
 gi|314976928|gb|EFT21023.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL045PA1]
 gi|314979888|gb|EFT23982.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL072PA2]
 gi|314985814|gb|EFT29906.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL005PA1]
 gi|314988403|gb|EFT32494.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL005PA2]
 gi|314988827|gb|EFT32918.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL005PA3]
 gi|315077112|gb|EFT49187.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL053PA2]
 gi|315079802|gb|EFT51778.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL078PA1]
 gi|315084889|gb|EFT56865.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL027PA2]
 gi|315087242|gb|EFT59218.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL002PA3]
 gi|315088975|gb|EFT60951.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL072PA1]
 gi|315096823|gb|EFT68799.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL038PA1]
 gi|315100092|gb|EFT72068.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL059PA2]
 gi|315100584|gb|EFT72560.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL046PA1]
 gi|315106024|gb|EFT78000.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL030PA1]
 gi|315109355|gb|EFT81331.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL030PA2]
 gi|327325636|gb|EGE67434.1| NADH dehydrogenase subunit [Propionibacterium acnes HL096PA2]
 gi|327328230|gb|EGE69997.1| NADH dehydrogenase subunit [Propionibacterium acnes HL096PA3]
 gi|327333154|gb|EGE74881.1| NADH dehydrogenase subunit [Propionibacterium acnes HL097PA1]
 gi|327445306|gb|EGE91960.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL043PA1]
 gi|327446946|gb|EGE93600.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL043PA2]
 gi|327449057|gb|EGE95711.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL013PA2]
 gi|327451403|gb|EGE98057.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL092PA1]
 gi|327452597|gb|EGE99251.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL087PA3]
 gi|327457640|gb|EGF04295.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL083PA2]
 gi|328751920|gb|EGF65536.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL087PA1]
 gi|328756935|gb|EGF70551.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL020PA1]
 gi|328759052|gb|EGF72668.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL025PA2]
 gi|328762247|gb|EGF75739.1| NADH dehydrogenase subunit [Propionibacterium acnes HL099PA1]
 gi|332676292|gb|AEE73108.1| NADH-quinone oxidoreductase subunit I [Propionibacterium acnes 266]
          Length = 102

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 8/85 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIES--------GPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             + C +C +C   CPA  ITI++          R          + ID   C+YCG+C 
Sbjct: 9   DVDACTSCMICARECPAWCITIDAHHEAVPDCDARRPRTVAVLDEFAIDWGLCMYCGMCI 68

Query: 111 EACPVDAIVEGPNFEFATETRQELY 135
           E+CP DA+         + +R +L 
Sbjct: 69  ESCPFDALSWSDKRVSESLSRTDLV 93


>gi|89896716|ref|YP_520203.1| NADH dehydrogenase I chain F [Desulfitobacterium hafniense Y51]
 gi|89336164|dbj|BAE85759.1| NADH dehydrogenase I chain F [Desulfitobacterium hafniense Y51]
          Length = 597

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 19/98 (19%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEH--ALRRYPNGEERCIACKLCEAICPAQAITI 80
            L+YF          FE+   + + R      L  Y    E+C  C LC   CPA  I+ 
Sbjct: 514 TLKYF-------REEFEEHIHAKKCRAGVCSELLTYSIDAEKCKKCGLCARNCPANCISG 566

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                      +   Y ID  +CI CG C ++C   A+
Sbjct: 567 N----------KNTPYVIDGERCIRCGSCMDSCKFGAV 594



 Score = 37.0 bits (84), Expect = 0.79,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 17/45 (37%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
            I +           + Y ID  KC  CGLC   CP + I    N
Sbjct: 525 HIHAKKCRAGVCSELLTYSIDAEKCKKCGLCARNCPANCISGNKN 569


>gi|41033733|emb|CAF18533.1| indolepyruvate ferredoxin oxidoreductase alpha subunit
           [Thermoproteus tenax]
          Length = 650

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 10/63 (15%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           Y    ++C +C +C  +    AI+ +   +            ID   C  C +C + CP 
Sbjct: 580 YVVDADKCKSCGICYNLLKCYAISKQPDGKA----------WIDPSLCNGCSMCAQVCPY 629

Query: 116 DAI 118
           +AI
Sbjct: 630 NAI 632


>gi|325969146|ref|YP_004245338.1| indolepyruvate:ferredoxin oxidoreductase (IOR), alpha subunit
           [Vulcanisaeta moutnovskia 768-28]
 gi|323708349|gb|ADY01836.1| indolepyruvate:ferredoxin oxidoreductase (IOR), alpha subunit
           [Vulcanisaeta moutnovskia 768-28]
          Length = 616

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 10/69 (14%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
            + + RY    + C AC +C  +    AI      +            ID   C+ C +C
Sbjct: 542 RNYVTRYYVNPDACKACGICYNLIACPAIVPLENRKA----------WIDPNMCVGCSVC 591

Query: 110 QEACPVDAI 118
            + CP DAI
Sbjct: 592 AQVCPYDAI 600


>gi|323188128|gb|EFZ73423.1| hypothetical protein ECRN5871_3885 [Escherichia coli RN587/1]
          Length = 411

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +       ++C+ C  C   C         G +  + + +T     +  K
Sbjct: 324 VPAEDLDRSYIVYPHINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 378 CVGCLLCGHVCPVGCIDLG 396


>gi|260425164|ref|ZP_05734388.2| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Dialister invisus
           DSM 15470]
 gi|260404360|gb|EEW97907.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Dialister invisus
           DSM 15470]
          Length = 1180

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 17/98 (17%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGT------- 90
           TS   R   A++      E CI+C  C  +CP  AI     T E   R  +G        
Sbjct: 662 TSHYERPAAAIQVPEWIPENCISCNQCAFVCPHAAIRPFIVTEEEEARAPEGFICRDLPG 721

Query: 91  -RRTVRYDID--MIKCIYCGLCQEAC--PVDAIVEGPN 123
            ++ ++Y I      C  C +C   C  P  A+V  P 
Sbjct: 722 PKKGLKYRIIVSPEDCYGCSICANVCPAPKKALVMKPI 759


>gi|302876890|ref|YP_003845523.1| hydrogenase, Fe-only [Clostridium cellulovorans 743B]
 gi|307687576|ref|ZP_07630022.1| hydrogenase, Fe-only [Clostridium cellulovorans 743B]
 gi|302579747|gb|ADL53759.1| hydrogenase, Fe-only [Clostridium cellulovorans 743B]
          Length = 574

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 44/117 (37%), Gaps = 9/117 (7%)

Query: 20  FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79
             L +++  KA+ T   PF     +     +   +       +C+ C  CEA C ++  T
Sbjct: 110 LKLVIKH--KARAT--TPFMPKDKTEYL--DVRSKSIIIDRTKCVLCGRCEATCESKTGT 163

Query: 80  IESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
                       R    D    D   C+ CG C   CPV A+ E P+ +   E  ++
Sbjct: 164 ASIKIVRDGDLVRVSTTDDKCFDDTNCLLCGQCVAVCPVAALSEKPHIDRVKEALED 220


>gi|238919984|ref|YP_002933499.1| electron transport complex protein RnfC [Edwardsiella ictaluri
           93-146]
 gi|259494050|sp|C5BDE7|RNFC_EDWI9 RecName: Full=Electron transport complex protein rnfC
 gi|238869553|gb|ACR69264.1| electron transport complex protein RnfC [Edwardsiella ictaluri
           93-146]
          Length = 800

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/113 (22%), Positives = 38/113 (33%), Gaps = 23/113 (20%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C  +CPA+ +  +       G          + +CI CG C   CP      
Sbjct: 376 QPCIRCGACADVCPAR-LLPQQLYWFSQGKEHDKARGYHLQECIECGACAYVCP------ 428

Query: 121 GPNFEFATETRQELYYDKERLLNNGD----------RWESEIVRNIVTDSPYR 163
             N       RQE    K  +    D          R+E+ + R +  +   R
Sbjct: 429 -SNIPLVQYYRQE----KAEIRALDDEARRAAEAKARFEARLAR-LEREKAAR 475


>gi|222033908|emb|CAP76649.1| Uncharacterized protein yeiA [Escherichia coli LF82]
 gi|312946768|gb|ADR27595.1| dihydropyrimidine dehydrogenase [Escherichia coli O83:H1 str. NRG
           857C]
 gi|324006546|gb|EGB75765.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 57-2]
          Length = 411

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +       ++C+ C  C   C         G +  + + +T     +  K
Sbjct: 324 VPAEDLDRSYIVYPHINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 378 CVGCLLCGHVCPVGCIDLG 396


>gi|218690296|ref|YP_002398508.1| dihydropyrimidine dehydrogenase [Escherichia coli ED1a]
 gi|218427860|emb|CAR08626.1| putative oxidoreductase subunit [Escherichia coli ED1a]
          Length = 411

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +       ++C+ C  C   C         G +  + + +T     +  K
Sbjct: 324 VPAEDLDRSYIVYPHINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 378 CVGCLLCGHVCPVGCIDLG 396


>gi|110642356|ref|YP_670086.1| dihydropyrimidine dehydrogenase [Escherichia coli 536]
 gi|117624348|ref|YP_853261.1| dihydropyrimidine dehydrogenase [Escherichia coli APEC O1]
 gi|161486180|ref|NP_754568.2| dihydropyrimidine dehydrogenase [Escherichia coli CFT073]
 gi|191170189|ref|ZP_03031743.1| dihydroorotate dehydrogenase family protein [Escherichia coli F11]
 gi|218559065|ref|YP_002391978.1| dihydropyrimidine dehydrogenase [Escherichia coli S88]
 gi|227887202|ref|ZP_04005007.1| dihydropyrimidine dehydrogenase [Escherichia coli 83972]
 gi|300981478|ref|ZP_07175559.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 200-1]
 gi|300982861|ref|ZP_07176325.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 45-1]
 gi|301048883|ref|ZP_07195876.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 185-1]
 gi|306814738|ref|ZP_07448900.1| dihydropyrimidine dehydrogenase [Escherichia coli NC101]
 gi|331658226|ref|ZP_08359188.1| putative oxidoreductase [Escherichia coli TA206]
 gi|110343948|gb|ABG70185.1| putative dihydropyrimidine dehydrogenase [Escherichia coli 536]
 gi|115513472|gb|ABJ01547.1| putative dihydropyrimidine dehydrogenase [Escherichia coli APEC O1]
 gi|190909705|gb|EDV69290.1| dihydroorotate dehydrogenase family protein [Escherichia coli F11]
 gi|218365834|emb|CAR03575.1| putative oxidoreductase subunit [Escherichia coli S88]
 gi|227835552|gb|EEJ46018.1| dihydropyrimidine dehydrogenase [Escherichia coli 83972]
 gi|294490821|gb|ADE89577.1| dihydroorotate dehydrogenase family protein [Escherichia coli
           IHE3034]
 gi|300299259|gb|EFJ55644.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 185-1]
 gi|300307551|gb|EFJ62071.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 200-1]
 gi|300408661|gb|EFJ92199.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 45-1]
 gi|305852132|gb|EFM52584.1| dihydropyrimidine dehydrogenase [Escherichia coli NC101]
 gi|307554216|gb|ADN46991.1| dihydroorotate dehydrogenase family protein [Escherichia coli ABU
           83972]
 gi|307626312|gb|ADN70616.1| dihydropyrimidine dehydrogenase [Escherichia coli UM146]
 gi|315285782|gb|EFU45222.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 110-3]
 gi|315294488|gb|EFU53836.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 153-1]
 gi|315297989|gb|EFU57259.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 16-3]
 gi|323951943|gb|EGB47817.1| dihydroorotate dehydrogenase [Escherichia coli H252]
 gi|323955912|gb|EGB51665.1| dihydroorotate dehydrogenase [Escherichia coli H263]
 gi|323968071|gb|EGB63481.1| dihydroorotate dehydrogenase [Escherichia coli M863]
 gi|324013972|gb|EGB83191.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 60-1]
 gi|324114437|gb|EGC08406.1| dihydroorotate dehydrogenase [Escherichia fergusonii B253]
 gi|327252385|gb|EGE64044.1| hypothetical protein ECSTEC7V_2552 [Escherichia coli STEC_7v]
 gi|331056474|gb|EGI28483.1| putative oxidoreductase [Escherichia coli TA206]
          Length = 411

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +       ++C+ C  C   C         G +  + + +T     +  K
Sbjct: 324 VPAEDLDRSYIVYPHINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 378 CVGCLLCGHVCPVGCIDLG 396


>gi|333016869|gb|EGK36193.1| hypothetical protein SFK227_2748 [Shigella flexneri K-227]
          Length = 367

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +       ++C+ C  C   C         G +  + + +T     +  K
Sbjct: 280 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 333

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 334 CVGCLLCGHVCPVGCIELG 352


>gi|332754780|gb|EGJ85145.1| hypothetical protein SF434370_2306 [Shigella flexneri 4343-70]
          Length = 272

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +       ++C+ C  C   C         G +  + + +T     +  K
Sbjct: 185 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 238

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 239 CVGCLLCGHVCPVGCIELG 257


>gi|325968086|ref|YP_004244278.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Vulcanisaeta moutnovskia 768-28]
 gi|323707289|gb|ADY00776.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Vulcanisaeta moutnovskia 768-28]
          Length = 444

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 7/85 (8%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +      + +C  C +C A CP +A  +                  + +KCI CG C   
Sbjct: 304 IFSIHIDDVKCSFCGVCFAKCPERAFDVGRDGNK-------TVLKFNSLKCIGCGHCARL 356

Query: 113 CPVDAIVEGPNFEFATETRQELYYD 137
           CP  AI      EF      ++ YD
Sbjct: 357 CPEKAITINRAREFPMSDSTDVVYD 381



 Score = 40.9 bits (94), Expect = 0.064,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 11/55 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           C  C   CP  A +I +            R  I+   CI CGLC   CP  A+  
Sbjct: 115 CNDCVNACPTNATSIVNN-----------RVVINENACIECGLCVSKCPTGALAM 158


>gi|317499936|ref|ZP_07958172.1| hydrogenase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331087841|ref|ZP_08336766.1| hypothetical protein HMPREF1025_00349 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|316898653|gb|EFV20688.1| hydrogenase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330409536|gb|EGG88977.1| hypothetical protein HMPREF1025_00349 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 580

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 15/116 (12%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           L+E      +    +F+ +TT     E                      +CI C+ C A+
Sbjct: 111 LQELCQELGVTDENYFEGETTHYELDESA------------VHMVRDNNKCILCRRCSAV 158

Query: 73  C-PAQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPVDAIVEGPNFE 125
           C   Q++ +         T     +++ +    C+ CG C  ACP  A+ E  N +
Sbjct: 159 CEKVQSVGVIGPNNRGFATFIGSPFEMGLGDTSCVGCGQCIAACPTGALYEKSNID 214


>gi|294867469|ref|XP_002765114.1| Pyruvate-flavodoxin oxidoreductase, putative [Perkinsus marinus
           ATCC 50983]
 gi|239865036|gb|EEQ97831.1| Pyruvate-flavodoxin oxidoreductase, putative [Perkinsus marinus
           ATCC 50983]
          Length = 1397

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 34/105 (32%), Gaps = 27/105 (25%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAI---------------TIESGPRCHDGTRRTVR 95
            AL       ++C  C +C   CP   I               T ++           + 
Sbjct: 713 VALMVPIVDMDKCTQCNICSMSCPHACIRPFLLSQAEDDAKPSTFDTRKAKGGAEVAGLH 772

Query: 96  YDID--MIKCIYCGLCQEACPVDAIVEG----------PNFEFAT 128
           Y I    + C  C +C  ACP DA+             PN+E+A 
Sbjct: 773 YRIQVSPLDCTGCEVCVHACPYDALRMEHLADFREIEAPNWEYAV 817


>gi|226944038|ref|YP_002799111.1| electron transport complex protein RnfC [Azotobacter vinelandii DJ]
 gi|226718965|gb|ACO78136.1| Electron transport complex, subunit C [Azotobacter vinelandii DJ]
          Length = 688

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 39/114 (34%), Gaps = 14/114 (12%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD------ 116
           CI C  C  +CPA  +  +       G         ++  CI CG C   CP        
Sbjct: 371 CIRCGACADVCPAS-LLPQQLHFFALGREHEQLRAYNLFDCIECGACAYVCPSSLPLVQY 429

Query: 117 ---AIVEGPNFE----FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
              A  E    E     A  +R      +ERL  + ++ E+E    +   +  R
Sbjct: 430 YRVAKAEIRELEQKRHKAGHSRLRFELRQERLRKSEEQKEAERRARVEKAARAR 483


>gi|224371047|ref|YP_002605211.1| two-component fusion protein (N:nitroreductase family
           protein-C:ferredoxin domain) [Desulfobacterium
           autotrophicum HRM2]
 gi|223693764|gb|ACN17047.1| two-component fusion protein (N:nitroreductase family
           protein-C:ferredoxin domain) [Desulfobacterium
           autotrophicum HRM2]
          Length = 338

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 4/66 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E C  C +C   CP   +  +   +   G           + CI C  C+  CP  +I
Sbjct: 25  NAETCSHCGMCAQTCPTSCLQWDEEKKIPYG----TGLVDLELACIGCNNCEAICPSSSI 80

Query: 119 VEGPNF 124
                +
Sbjct: 81  RVRGEY 86



 Score = 33.5 bits (75), Expect = 8.6,   Method: Composition-based stats.
 Identities = 7/43 (16%), Positives = 16/43 (37%)

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +   + H    +    + +   C +CG+C + CP   +     
Sbjct: 7   DKVKKAHFPETQAYTLEFNAETCSHCGMCAQTCPTSCLQWDEE 49


>gi|221633449|ref|YP_002522674.1| formate dehydrogenase subunit alpha-like protein [Thermomicrobium
           roseum DSM 5159]
 gi|221156487|gb|ACM05614.1| formate dehydrogenase, alpha subunit homolog [Thermomicrobium
           roseum DSM 5159]
          Length = 811

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 5/85 (5%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA-ITIESGPRCHDGTRRTVR 95
           PF +   +  ++       Y    ERCI C  C  +C     +T     R          
Sbjct: 131 PFRRPKLARPYKHLSEYIDYK--WERCILCARCTRVCDEMIGVTAIEVLRRGLEGEIGSA 188

Query: 96  YDIDMIK--CIYCGLCQEACPVDAI 118
           ++ID+ +  C  CG+C   CPV A+
Sbjct: 189 WNIDLTRTTCTSCGMCIAVCPVGAL 213


>gi|149909799|ref|ZP_01898450.1| NuoG2 NADH I CHAIN G 2 [Moritella sp. PE36]
 gi|149807131|gb|EDM67087.1| NuoG2 NADH  I CHAIN G 2 [Moritella sp. PE36]
          Length = 823

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 24/64 (37%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              RCI C+ C  +C      +  G                +  C +CG C E CPV A+
Sbjct: 144 NANRCIQCQRCVRVCEEVVGDVALGTMERGLDSEITGVGNSLKDCSHCGNCIEVCPVGAL 203

Query: 119 VEGP 122
           +  P
Sbjct: 204 MSTP 207


>gi|153814131|ref|ZP_01966799.1| hypothetical protein RUMTOR_00340 [Ruminococcus torques ATCC 27756]
 gi|145848527|gb|EDK25445.1| hypothetical protein RUMTOR_00340 [Ruminococcus torques ATCC 27756]
          Length = 595

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 15/116 (12%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           L+E      +    +F+ +TT     E                      +CI C+ C A+
Sbjct: 126 LQELCQELGVTDENYFEGETTHYELDESA------------VHMVRDNNKCILCRRCSAV 173

Query: 73  C-PAQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPVDAIVEGPNFE 125
           C   Q++ +         T     +++ +    C+ CG C  ACP  A+ E  N +
Sbjct: 174 CEKVQSVGVIGPNNRGFATFIGSPFEMGLGDTSCVGCGQCIAACPTGALYEKSNID 229


>gi|134045694|ref|YP_001097180.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C5]
 gi|132663319|gb|ABO34965.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methanococcus maripaludis C5]
          Length = 397

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 29/66 (43%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
             EE+C  C  C   CP  AIT+ +       +R   +   +   CI CG C ++CP  A
Sbjct: 265 WDEEKCAYCGPCALKCPNNAITVVNPKGLELPSRAKTQSQNEFKMCIRCGACVQSCPSGA 324

Query: 118 IVEGPN 123
           +  G  
Sbjct: 325 LRMGKI 330



 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++ CI C +C   CP  AI   +G +     +  V++ +D   CI CG C + CP D I
Sbjct: 160 DKDSCIYCSICAQTCPWNAIF-VAGKKSPKRDKNIVKFSVDSDLCIGCGDCTDKCPKDLI 218

Query: 119 VE 120
           V 
Sbjct: 219 VL 220



 Score = 41.6 bits (96), Expect = 0.040,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 3/70 (4%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           A  +  N  + CI C  C   CP+ A+ +    +     +   R +     C  CG C E
Sbjct: 299 AKTQSQNEFKMCIRCGACVQSCPSGALRM---GKITHNGKEYERIEFSPKLCDSCGKCVE 355

Query: 112 ACPVDAIVEG 121
            CP D +   
Sbjct: 356 TCPYDMLTLT 365



 Score = 40.5 bits (93), Expect = 0.072,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 3/76 (3%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID-MIKCIYCGLCQEACPVDAIVE 120
            C+ C  C   CP   + +E             +  I  + +C+ CG+C   CPV AI  
Sbjct: 93  FCVGCMKCIDACPDNYVGMEGVVEPAKRDITLPKEPITVLDECVGCGVCVSECPVGAISI 152

Query: 121 GPNFEFATETRQELYY 136
               E A   +    Y
Sbjct: 153 EN--EKAVVDKDSCIY 166



 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 11/59 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           + C+ C +C + CP  AI+IE+               +D   CIYC +C + CP +AI 
Sbjct: 133 DECVGCGVCVSECPVGAISIENEKAV-----------VDKDSCIYCSICAQTCPWNAIF 180



 Score = 35.1 bits (79), Expect = 3.0,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 3/57 (5%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           N  + C  C  C   CP  A+ +          +   + +    KC  CG C + CP
Sbjct: 27  NPFKVCQLCGNCVNACPNDALNLRE---IELNGKTIKQIEYFPTKCDLCGECVKDCP 80


>gi|150021476|ref|YP_001306830.1| hydrogenase, Fe-only [Thermosipho melanesiensis BI429]
 gi|149793997|gb|ABR31445.1| hydrogenase, Fe-only [Thermosipho melanesiensis BI429]
          Length = 582

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 3/71 (4%)

Query: 57  PNGEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQEAC 113
                RCI C+ C  +C   Q + I S       T     +D  +   +CI CG C   C
Sbjct: 139 QRDLSRCIKCQRCVRVCSEIQGMNIYSMVERGYKTVPQTAFDQPVYETECISCGQCAYLC 198

Query: 114 PVDAIVEGPNF 124
           PV AI E P++
Sbjct: 199 PVGAIYETPDW 209


>gi|91211433|ref|YP_541419.1| dihydropyrimidine dehydrogenase [Escherichia coli UTI89]
 gi|237704612|ref|ZP_04535093.1| dihydropyrimidine dehydrogenase [Escherichia sp. 3_2_53FAA]
 gi|26108933|gb|AAN81136.1|AE016763_95 Hypothetical protein yeiA [Escherichia coli CFT073]
 gi|91073007|gb|ABE07888.1| hypothetical protein YeiA [Escherichia coli UTI89]
 gi|226900978|gb|EEH87237.1| dihydropyrimidine dehydrogenase [Escherichia sp. 3_2_53FAA]
          Length = 413

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +       ++C+ C  C   C         G +  + + +T     +  K
Sbjct: 326 VPAEDLDRSYIVYPHINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 379

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 380 CVGCLLCGHVCPVGCIDLG 398


>gi|325829783|ref|ZP_08163241.1| electron transport complex, RnfABCDGE type, B subunit [Eggerthella
           sp. HGA1]
 gi|325487950|gb|EGC90387.1| electron transport complex, RnfABCDGE type, B subunit [Eggerthella
           sp. HGA1]
          Length = 267

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 11/56 (19%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           CI C+ C   CP Q+IT+E+               ID   CI CG C E CP  AI
Sbjct: 217 CIGCQKCAKTCPTQSITVENNLA-----------RIDTDTCIGCGTCIEVCPTHAI 261



 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 8/73 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK--------CIYCGLCQ 110
               C  C  C  ICP   I++         +  T +  +   K        CI C  C 
Sbjct: 165 DTAACTGCGTCAKICPRGIISMVDQASSPTASVVTCKNTMAGAKTRKVCSVGCIGCQKCA 224

Query: 111 EACPVDAIVEGPN 123
           + CP  +I    N
Sbjct: 225 KTCPTQSITVENN 237



 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 21/61 (34%), Gaps = 11/61 (18%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+    C   CP  AI +E+G              ID   C  CG C + CP   I    
Sbjct: 140 CLGYGDCAEACPFDAIVVENG-----------VARIDTAACTGCGTCAKICPRGIISMVD 188

Query: 123 N 123
            
Sbjct: 189 Q 189


>gi|322371863|ref|ZP_08046406.1| NADH:ubiquinone oxidoreductase, subunit G, iron- sulfur binding
           protein [Haladaptatus paucihalophilus DX253]
 gi|320548748|gb|EFW90419.1| NADH:ubiquinone oxidoreductase, subunit G, iron- sulfur binding
           protein [Haladaptatus paucihalophilus DX253]
          Length = 306

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 25/76 (32%), Gaps = 4/76 (5%)

Query: 57  PNGEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
                +CI C  C   C        + +E          +     +    C+ CG C   
Sbjct: 185 QIDRNKCILCNRCVEACNDVQVEGVLRMEGNAGETRIGFQNGAETMMESTCVSCGHCATV 244

Query: 113 CPVDAIVEGPNFEFAT 128
           CP  A+VE    + AT
Sbjct: 245 CPTGALVEQDMTDIAT 260


>gi|307545319|ref|YP_003897798.1| electron transporter RnfB [Halomonas elongata DSM 2581]
 gi|307217343|emb|CBV42613.1| K03616 electron transport complex protein RnfB [Halomonas elongata
           DSM 2581]
          Length = 325

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 12/78 (15%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C   CP  AI   +             + +   +C  C LC   CPVD I  
Sbjct: 81  DECIGCTKCIQACPVDAILGAAKQ----------MHTVIESECTGCELCVAPCPVDCIDL 130

Query: 121 --GPNFEFATETRQELYY 136
              P ++ A++ R +  Y
Sbjct: 131 LPHPEWQAASDERAQRDY 148



 Score = 37.8 bits (86), Expect = 0.48,   Method: Composition-based stats.
 Identities = 12/22 (54%), Positives = 14/22 (63%)

Query: 97  DIDMIKCIYCGLCQEACPVDAI 118
            I   +CI C  C +ACPVDAI
Sbjct: 77  RIREDECIGCTKCIQACPVDAI 98


>gi|282881468|ref|ZP_06290142.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Prevotella
           timonensis CRIS 5C-B1]
 gi|281304694|gb|EFA96780.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Prevotella
           timonensis CRIS 5C-B1]
          Length = 1226

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 33/101 (32%), Gaps = 18/101 (17%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIE---------------SGPRCHDGTRR 92
           RG  A        E CI C  C  +CP  AI                  +          
Sbjct: 679 RGVEAFNPEWT-SENCIQCNKCAYVCPHAAIRPFVLDEEEVKGFDDTTLAMKVPRPMAGM 737

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
             R  + ++ C+ CG C + CP +   +G   +    TR E
Sbjct: 738 NFRIQVSVLDCVGCGNCADVCPGN--KQGKALKMVPFTRDE 776


>gi|253680886|ref|ZP_04861689.1| Fe-hydrogenase large subunit family protein [Clostridium botulinum
           D str. 1873]
 gi|253562735|gb|EES92181.1| Fe-hydrogenase large subunit family protein [Clostridium botulinum
           D str. 1873]
          Length = 494

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 7/69 (10%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGT-------RRTVRYDIDMIKCIYCGLC 109
              ++ C  C +C+ +CP  AI+    P                 R  I   +CI CG C
Sbjct: 134 YINQDACRECGMCKQVCPYNAISEVMRPCKTACPTGAICISPEDRRAIIKDEECISCGAC 193

Query: 110 QEACPVDAI 118
            +ACP  AI
Sbjct: 194 MKACPFGAI 202


>gi|225851173|ref|YP_002731407.1| NADH dehydrogenase i chain g [Persephonella marina EX-H1]
 gi|225645394|gb|ACO03580.1| NADH dehydrogenase i chain g [Persephonella marina EX-H1]
          Length = 653

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 3/91 (3%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIAC-KLCEAICPAQAITIESGPRCHDGTR 91
           T   PF+K      +  ++      N    C+ C  +C+ +  A A+  E          
Sbjct: 125 TPFTPFDKIRPEEDWESDY-FEFISNRCVLCLRCVSVCKNVVGADALFQEERG-FETVIS 182

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
              +      +C +CGLC + CPV AI+  P
Sbjct: 183 PDKKPMDTESRCEFCGLCVDICPVGAIIFKP 213


>gi|239813114|ref|YP_002942024.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Variovorax paradoxus
           S110]
 gi|239799691|gb|ACS16758.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Variovorax paradoxus
           S110]
          Length = 428

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 11/67 (16%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            ++++    E CI C  CEA CP  AIT +              Y +    C  C  C  
Sbjct: 9   VIKQHLIDPEICIRCNTCEATCPVNAITHDDN-----------NYVVRADICNGCMACIS 57

Query: 112 ACPVDAI 118
            CP  +I
Sbjct: 58  PCPTGSI 64



 Score = 38.2 bits (87), Expect = 0.39,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 14/26 (53%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPN 123
           ID   CI C  C+  CPV+AI    N
Sbjct: 15  IDPEICIRCNTCEATCPVNAITHDDN 40


>gi|254168947|ref|ZP_04875786.1| CobQ/CobB/MinD/ParA nucleotide binding domain, putative
           [Aciduliprofundum boonei T469]
 gi|197622053|gb|EDY34629.1| CobQ/CobB/MinD/ParA nucleotide binding domain, putative
           [Aciduliprofundum boonei T469]
          Length = 292

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 12/63 (19%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DAIV 119
           ++CI C +C+ IC  +AI IESG            + I    C  CG C+  CPV DAI+
Sbjct: 67  DKCINCGVCDNICIYEAIYIESGQ-----------HKIKEYLCEGCGACKAVCPVEDAII 115

Query: 120 EGP 122
              
Sbjct: 116 IDD 118


>gi|188585138|ref|YP_001916683.1| electron transport complex, RnfABCDGE type, B subunit
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349825|gb|ACB84095.1| electron transport complex, RnfABCDGE type, B subunit
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 268

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 5/75 (6%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQE 111
               E+C  C  C   CP   I + +    H        +      +  + CI CG+C +
Sbjct: 163 HIDPEKCTGCNKCANTCPKDVIKMINANTKHHVRCNSCDKGKTVRQVCEVGCIGCGVCAK 222

Query: 112 ACPVDAIVEGPNFEF 126
            CPVDAI    N  +
Sbjct: 223 VCPVDAITIENNLAY 237



 Score = 40.5 bits (93), Expect = 0.081,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 11/62 (17%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C +C  +CP  AITIE+               ID  +C+ CG C+E CP D I    
Sbjct: 214 CIGCGVCAKVCPVDAITIENNLAY-----------IDSHECVNCGKCKEKCPRDCITSDL 262

Query: 123 NF 124
            +
Sbjct: 263 EY 264



 Score = 38.2 bits (87), Expect = 0.44,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 23/64 (35%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +  C+    CE ICP  AI ++     H          ID  KC  C  C   CP D I
Sbjct: 135 CDYGCLGLGTCEHICPFDAIEMQDNGIPH----------IDPEKCTGCNKCANTCPKDVI 184

Query: 119 VEGP 122
               
Sbjct: 185 KMIN 188


>gi|91203539|emb|CAJ71192.1| conserved hypothetical protein [Candidatus Kuenenia
           stuttgartiensis]
          Length = 304

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 12/96 (12%)

Query: 30  AKTTINYPFEKGSTSPRFR--GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH 87
              TI+ P      +   R  G   + +     + C  C +C   CP   I++       
Sbjct: 215 EPATISSPAVYSVANTPRRKTGNWRIFKPQWNYDACTKCMICVNRCPDSCISVNKEGFPF 274

Query: 88  DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                      D   C  C +C E CP  AI +   
Sbjct: 275 A----------DYDNCKGCMICAEECPTKAIGKKRE 300



 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 16/48 (33%), Gaps = 1/48 (2%)

Query: 84  PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN-FEFATET 130
           PR   G  R  +   +   C  C +C   CP   I      F FA   
Sbjct: 231 PRRKTGNWRIFKPQWNYDACTKCMICVNRCPDSCISVNKEGFPFADYD 278


>gi|148257859|ref|YP_001242444.1| benzoyl-CoA oxygenase, component A [Bradyrhizobium sp. BTAi1]
 gi|146410032|gb|ABQ38538.1| benzoyl-CoA oxygenase, component A [Bradyrhizobium sp. BTAi1]
          Length = 393

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 11/66 (16%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L+++    E CI C  CE  CP  AIT ++             Y +D  KC +C  C + 
Sbjct: 5   LKQHLIDPEICIRCNTCEETCPEDAITHDNN-----------NYVVDATKCNFCMDCIQP 53

Query: 113 CPVDAI 118
           CP  +I
Sbjct: 54  CPTGSI 59



 Score = 37.8 bits (86), Expect = 0.54,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 17/40 (42%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
           ID   CI C  C+E CP DAI    N      T+     D
Sbjct: 10  IDPEICIRCNTCEETCPEDAITHDNNNYVVDATKCNFCMD 49


>gi|119774967|ref|YP_927707.1| electron transport complex protein RnfC [Shewanella amazonensis
           SB2B]
 gi|119767467|gb|ABM00038.1| iron-sulfur cluster-binding protein [Shewanella amazonensis SB2B]
          Length = 880

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 10/98 (10%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACPVD 116
           + CI C  C   CPA  +     P+      +   YD     ++  CI CG C   CP  
Sbjct: 377 KPCIRCGECAVACPASLL-----PQQLFWHAKAEEYDKAQSYNLKDCIECGCCTYVCP-S 430

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVR 154
            I     +  A    ++   +K        R+E+ I R
Sbjct: 431 DIPLVEYYRVAKAAIRQQAEEKASAERAKVRFEARITR 468


>gi|332284974|ref|YP_004416885.1| hypothetical protein PT7_1721 [Pusillimonas sp. T7-7]
 gi|330428927|gb|AEC20261.1| hypothetical protein PT7_1721 [Pusillimonas sp. T7-7]
          Length = 209

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 25/81 (30%), Gaps = 10/81 (12%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
                      L+     E  CI C LC   CP  AI   +           + + +   
Sbjct: 65  PLDTSCGEHRPLQVAVIDEAHCIGCTLCIQACPVDAIVGANK----------LMHTVLTE 114

Query: 102 KCIYCGLCQEACPVDAIVEGP 122
            C  C LC   CPVD I    
Sbjct: 115 DCTGCDLCVAPCPVDCISMID 135


>gi|330834658|ref|YP_004409386.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Metallosphaera cuprina Ar-4]
 gi|329566797|gb|AEB94902.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Metallosphaera cuprina Ar-4]
          Length = 103

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + CIA   C   CP         P      ++     I+   CI+C  C   CPV AI
Sbjct: 41  DFDICIADGSCITACPVNVFQWYETPGNPVSEKKADP--INENACIFCMACVNVCPVAAI 98

Query: 119 VEGP 122
              P
Sbjct: 99  DVKP 102


>gi|313648904|gb|EFS13341.1| electron transport complex protein rnfC [Shigella flexneri 2a str.
           2457T]
          Length = 676

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 39/112 (34%), Gaps = 13/112 (11%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CP   +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPVD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            I     F     E A   ++E     +R      R+E+   R +  +   R
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEE-----KRAAEAKARFEARQAR-LEREKATR 474


>gi|300950446|ref|ZP_07164365.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 116-1]
 gi|300450223|gb|EFK13843.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 116-1]
          Length = 496

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 294 PQEEQSCIRCSACADACPAD-LLPQQLFWFSKGQQHDKATTHNIADCIECGACAWVCP-S 351

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 352 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 400


>gi|255017249|ref|ZP_05289375.1| hypothetical protein LmonF_04728 [Listeria monocytogenes FSL
           F2-515]
          Length = 544

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 34/104 (32%), Gaps = 16/104 (15%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCH 87
              T+   +   AL       E C  C  C  +CP  AI              E      
Sbjct: 382 PPGTAAYEKRGIALEVPEWISENCTMCNECAFVCPHAAIRPILTDEEEMESAPEGFMTRE 441

Query: 88  DGTRRTVRYDID--MIKCIYCGLCQEACP--VDAIVEGPNFEFA 127
              +  +RY I    + C  C LC E CP    A+V  P  E A
Sbjct: 442 MRGKDGLRYRIQVSPMDCTGCNLCAETCPAKEKALVMKPFEEVA 485



 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 5/80 (6%)

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV--EGPNFEFATETRQ 132
           + A    +      G    V   I    C  C  C   CP  AI        E   E+  
Sbjct: 378 SGAYPPGTAAYEKRGIALEVPEWIS-ENCTMCNECAFVCPHAAIRPILTDEEEM--ESAP 434

Query: 133 ELYYDKERLLNNGDRWESEI 152
           E +  +E    +G R+  ++
Sbjct: 435 EGFMTREMRGKDGLRYRIQV 454


>gi|238028215|ref|YP_002912446.1| ferredoxin [Burkholderia glumae BGR1]
 gi|237877409|gb|ACR29742.1| Iron-sulfur cluster-binding protein [Burkholderia glumae BGR1]
          Length = 279

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 23/64 (35%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ CI C LC   CP  AI                 + +    C  C LC   CPVD I
Sbjct: 83  DEQLCIGCTLCMQACPVDAIVGAPKQ----------MHTVVAELCTGCDLCVPPCPVDCI 132

Query: 119 VEGP 122
              P
Sbjct: 133 AMIP 136



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/21 (66%), Positives = 15/21 (71%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C LC +ACPVDAI
Sbjct: 82  IDEQLCIGCTLCMQACPVDAI 102


>gi|268680517|ref|YP_003304948.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268618548|gb|ACZ12913.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 1187

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 31/96 (32%), Gaps = 19/96 (19%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI----------------E 81
           FE G+T    RG   +       E CI C  C  +CP   I                   
Sbjct: 669 FEHGTTEYEKRGVGVMVPKWIE-ENCIQCNQCAFVCPHAVIRPFLINDAEFAAAPEGVKT 727

Query: 82  SGPRCHDGTRRTVRYDIDMI--KCIYCGLCQEACPV 115
                     + ++Y I +    C  C LC EACP 
Sbjct: 728 HALDAKGKELKGLKYKIQVSSLDCTGCDLCAEACPT 763


>gi|222445705|ref|ZP_03608220.1| hypothetical protein METSMIALI_01346 [Methanobrevibacter smithii
           DSM 2375]
 gi|261349746|ref|ZP_05975163.1| tungsten formylmethanofuran dehydrogenase, subunit F
           [Methanobrevibacter smithii DSM 2374]
 gi|222435270|gb|EEE42435.1| hypothetical protein METSMIALI_01346 [Methanobrevibacter smithii
           DSM 2375]
 gi|288861701|gb|EFC93999.1| tungsten formylmethanofuran dehydrogenase, subunit F
           [Methanobrevibacter smithii DSM 2374]
          Length = 365

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 6/99 (6%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
             S      H        +++CI CK CE  CP  AIT+            +    +   
Sbjct: 115 PISEIEAYPHYNSYSKIDDDKCIYCKRCETACPQDAITVM-RKLPERQNLVSGEISVSDD 173

Query: 102 KCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140
            C+YCG+CQE CP +AIV        T  ++ +  DK++
Sbjct: 174 DCVYCGICQELCPAEAIVVDN-----TTGQESIVIDKDK 207



 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 4/81 (4%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---- 97
             +  F  E  +++    E +C+ C +C  +CP  A+ +               Y+    
Sbjct: 71  KIAQNFHAEFDVQKISIDENKCVLCGMCSGLCPIDALVLTIDDVPISEIEAYPHYNSYSK 130

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID  KCIYC  C+ ACP DAI
Sbjct: 131 IDDDKCIYCKRCETACPQDAI 151



 Score = 42.4 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 7/73 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-------IDMIKCIYCGLCQE 111
            +++C+ C +C+  CP  AI+       +         +       ID   C+YCG C+ 
Sbjct: 204 DKDKCVYCLVCKRACPVDAISAVCRACSYGEYDFKAEDEVTTGSAVIDDELCVYCGWCEG 263

Query: 112 ACPVDAIVEGPNF 124
            CP DA+     F
Sbjct: 264 VCPTDAVETNKPF 276



 Score = 42.0 bits (97), Expect = 0.025,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 7/58 (12%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C+ C +C+ +CPA+AI +++               ID  KC+YC +C+ ACPVDAI
Sbjct: 173 DDCVYCGICQELCPAEAIVVDNTTGQES-------IVIDKDKCVYCLVCKRACPVDAI 223



 Score = 41.6 bits (96), Expect = 0.032,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 8/86 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +   T+  F+G   +      +E C  C  C   CP  A+             R  +
Sbjct: 265 CPTDAVETNKPFKGTLEI-----DQEACQTCGACVDTCPCDALAFPVSTAPGQRLDRITK 319

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEG 121
           +D     CI C  C + CP  AI   
Sbjct: 320 HD---QYCIRCKACAKVCPNGAITVT 342



 Score = 40.5 bits (93), Expect = 0.084,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 8/60 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +E C+ C  CE +CP  A                   +ID   C  CG C + CP DA+
Sbjct: 251 DDELCVYCGWCEGVCPTDA--------VETNKPFKGTLEIDQEACQTCGACVDTCPCDAL 302



 Score = 36.2 bits (82), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 20/94 (21%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY----------- 96
           R    +R+    ++ C+ C +CE+ CP +AIT+          R    Y           
Sbjct: 17  RAAEEVRKLSFNDQICLGCGVCESTCPVEAITLNPIAIDARHRRSNDVYFSGHEKIAQNF 76

Query: 97  ---------DIDMIKCIYCGLCQEACPVDAIVEG 121
                     ID  KC+ CG+C   CP+DA+V  
Sbjct: 77  HAEFDVQKISIDENKCVLCGMCSGLCPIDALVLT 110



 Score = 34.3 bits (77), Expect = 6.2,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
           C+ CG+C+  CPV+AI   P    A   R    Y
Sbjct: 32  CLGCGVCESTCPVEAITLNPIAIDARHRRSNDVY 65


>gi|150402794|ref|YP_001330088.1| ferredoxin [Methanococcus maripaludis C7]
 gi|150033824|gb|ABR65937.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           maripaludis C7]
          Length = 170

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 7/86 (8%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTV--RYDIDMIKCIYCGLCQEACPVDAIV- 119
           CI C  C+  CP +AI +            +      ID  KC+YC  C + CPV A+  
Sbjct: 52  CIGCGGCKNACPTKAIEMIPVEPVKITETYSKESIPKIDYDKCVYCLYCHDFCPVFALFN 111

Query: 120 -EGPNFEFATETRQELYY-DKERLLN 143
              P         ++L   D  +LL 
Sbjct: 112 EISPIHPRHVG--EDLVLVDLSKLLE 135


>gi|91773397|ref|YP_566089.1| hypothetical protein Mbur_1428 [Methanococcoides burtonii DSM 6242]
 gi|91712412|gb|ABE52339.1| 4Fe-4S cluster-binding protein [Methanococcoides burtonii DSM 6242]
          Length = 379

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 28/81 (34%), Gaps = 12/81 (14%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
                 RF     +R + N    C  C  C   C  +AI  E G              I+
Sbjct: 295 PPFLVSRFGNLFTIRPFIN-TSSCTLCGSCVLNCSPKAIEQEDGK-----------LQIN 342

Query: 100 MIKCIYCGLCQEACPVDAIVE 120
             KCI C  C+E CP  A+  
Sbjct: 343 DEKCILCYCCRELCPSGAVEM 363


>gi|332758459|gb|EGJ88780.1| electron transport complex protein rnfC [Shigella flexneri K-671]
 gi|332767030|gb|EGJ97229.1| electron transport complex, RnfABCDGE type, C subunit [Shigella
           flexneri 2930-71]
          Length = 684

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 39/112 (34%), Gaps = 13/112 (11%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CP   +  +       G +       ++  CI CG C   CP  
Sbjct: 347 PQEEQSCIRCSACADACPVD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 404

Query: 117 AIVEGPNF-----EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            I     F     E A   ++E     +R      R+E+   R +  +   R
Sbjct: 405 NIPLVQYFRQEKAEIAAIRQEE-----KRAAEAKARFEARQAR-LEREKATR 450


>gi|289191701|ref|YP_003457642.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
 gi|288938151|gb|ADC68906.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
          Length = 389

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            + +CI C +C   CP  AI   +G       +   +++++  KCIYC  C E CP + I
Sbjct: 165 DKSKCIYCSICAQTCPWNAIF-VAGKIPKKRRKEVKKFEVNAEKCIYCLKCVEVCPGNMI 223

Query: 119 VEGPN 123
                
Sbjct: 224 KVDKE 228



 Score = 41.6 bits (96), Expect = 0.034,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 3/73 (4%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
             +    C  C  C   CP  A+            ++  R      KC  CG C EACP+
Sbjct: 27  DIDNFNVCNLCMECVKACPTGALV---EEEIEINGKKLKRVSYLAHKCEKCGNCAEACPI 83

Query: 116 DAIVEGPNFEFAT 128
                  +F ++ 
Sbjct: 84  GIKKVDDDFPYSK 96



 Score = 40.5 bits (93), Expect = 0.084,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 21/64 (32%), Gaps = 3/64 (4%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             +         CI C  C   CP  A+ +    +     +   R +     C  CG C 
Sbjct: 292 IVVDEDKKEVRMCIVCGACTVACPTGALKL---GKIEHNGKEYNRIEFSPYLCDKCGKCV 348

Query: 111 EACP 114
           E CP
Sbjct: 349 EVCP 352



 Score = 38.5 bits (88), Expect = 0.27,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 11/80 (13%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
            G      R   A +      E C+ C +C   CP  AIT+E G              ID
Sbjct: 117 PGVIDKPKREVKAPKEPIVVTEACVGCGICVPECPVSAITLEDGKAV-----------ID 165

Query: 100 MIKCIYCGLCQEACPVDAIV 119
             KCIYC +C + CP +AI 
Sbjct: 166 KSKCIYCSICAQTCPWNAIF 185


>gi|121595761|ref|YP_987657.1| 4Fe-4S ferredoxin [Acidovorax sp. JS42]
 gi|120607841|gb|ABM43581.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Acidovorax
           sp. JS42]
          Length = 699

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 34/118 (28%), Gaps = 13/118 (11%)

Query: 20  FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79
             L L +          P               +      ++RC  C  C + CPA A+ 
Sbjct: 531 LELALDHLVTNAPARELPEAIALPQGPSPWGTVVV----DKDRCTLCLSCVSACPAGALQ 586

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
                          +       C+ CGLC+  CP +AI   P      E  Q    +
Sbjct: 587 DNPQA---------PQLRFTEQNCVQCGLCERTCPENAIALQPRMLLTPERGQPRVLN 635



 Score = 41.2 bits (95), Expect = 0.042,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 9/55 (16%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C  C  IC A+AI+ +             +  ++   C+ CG C   CP  A+
Sbjct: 318 VGCNACVDICSAEAISSDP---------VRQQVVVNPHLCVGCGACTTVCPTGAM 363



 Score = 37.4 bits (85), Expect = 0.69,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 34/97 (35%), Gaps = 19/97 (19%)

Query: 45  PRFRGEHALRRYPN---GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
             + G  AL+   +     + C  C  C   CP  AI ++              Y IDM 
Sbjct: 176 KGWLGRFALQWTADNPIDLDLCTRCNACVTACPENAIGLD--------------YQIDMT 221

Query: 102 KCIYCGLCQEACPVD-AIVEGPNFEFATETRQELYYD 137
            C     C +AC V  AI      E  ++   +L  D
Sbjct: 222 ACTGHRDCVKACAVAGAIRFEREAEVQSQDF-DLVLD 257


>gi|148643469|ref|YP_001273982.1| tungsten formylmethanofuran dehydrogenase, subunit F, FwdF
           [Methanobrevibacter smithii ATCC 35061]
 gi|89953728|gb|ABD83344.1| FwdF [Methanobrevibacter smithii]
 gi|148552486|gb|ABQ87614.1| tungsten formylmethanofuran dehydrogenase, subunit F, FwdF
           [Methanobrevibacter smithii ATCC 35061]
          Length = 365

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 6/99 (6%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
             S      H        +++CI CK CE  CP  AIT+            +    +   
Sbjct: 115 PISEIEAYPHYNSYSKIDDDKCIYCKRCETACPQDAITVM-RKLPERQNLVSGEISVSDD 173

Query: 102 KCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140
            C+YCG+CQE CP +AIV        T  ++ +  DK++
Sbjct: 174 DCVYCGICQELCPAEAIVVDN-----TTGQESIVIDKDK 207



 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 4/81 (4%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---- 97
             +  F  E  +++    E +C+ C +C  +CP  A+ +               Y+    
Sbjct: 71  KIAQNFHAEFDVQKISIDENKCVLCGMCSGLCPIDALVLTIDDVPISEIEAYPHYNSYSK 130

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID  KCIYC  C+ ACP DAI
Sbjct: 131 IDDDKCIYCKRCETACPQDAI 151



 Score = 42.4 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 7/73 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-------IDMIKCIYCGLCQE 111
            +++C+ C +C+  CP  AI+       +         +       ID   C+YCG C+ 
Sbjct: 204 DKDKCVYCLVCKRACPVDAISAVCRACSYGEYDFKAEDEVTTGSAVIDDELCVYCGWCEG 263

Query: 112 ACPVDAIVEGPNF 124
            CP DA+     F
Sbjct: 264 VCPTDAVETNKPF 276



 Score = 42.0 bits (97), Expect = 0.025,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 7/58 (12%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C+ C +C+ +CPA+AI +++               ID  KC+YC +C+ ACPVDAI
Sbjct: 173 DDCVYCGICQELCPAEAIVVDNTTGQES-------IVIDKDKCVYCLVCKRACPVDAI 223



 Score = 41.6 bits (96), Expect = 0.032,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 8/86 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +   T+  F+G   +      +E C  C  C   CP  A+             R  +
Sbjct: 265 CPTDAVETNKPFKGTLEI-----DQEACQTCGACVDTCPCDALAFPVSTAPGQRLDRITK 319

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEG 121
           +D     CI C  C + CP  AI   
Sbjct: 320 HD---QYCIRCKACAKVCPNGAITVT 342



 Score = 40.5 bits (93), Expect = 0.085,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 8/60 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +E C+ C  CE +CP  A                   +ID   C  CG C + CP DA+
Sbjct: 251 DDELCVYCGWCEGVCPTDA--------VETNKPFKGTLEIDQEACQTCGACVDTCPCDAL 302



 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 20/94 (21%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY----------- 96
           R    +R+    ++ C+ C +CE+ CP +AIT+          R    Y           
Sbjct: 17  RAAEEVRKLSFNDQICLGCGVCESTCPVEAITLNPIAIDARHRRSNDVYFSGHKKIAQNF 76

Query: 97  ---------DIDMIKCIYCGLCQEACPVDAIVEG 121
                     ID  KC+ CG+C   CP+DA+V  
Sbjct: 77  HAEFDVQKISIDENKCVLCGMCSGLCPIDALVLT 110



 Score = 34.3 bits (77), Expect = 6.3,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 17/34 (50%)

Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
           C+ CG+C+  CPV+AI   P    A   R    Y
Sbjct: 32  CLGCGVCESTCPVEAITLNPIAIDARHRRSNDVY 65


>gi|24113019|ref|NP_707529.1| electron transport complex protein RnfC [Shigella flexneri 2a str.
           301]
 gi|30063144|ref|NP_837315.1| electron transport complex protein RnfC [Shigella flexneri 2a str.
           2457T]
 gi|110805602|ref|YP_689122.1| electron transport complex protein RnfC [Shigella flexneri 5 str.
           8401]
 gi|81724487|sp|Q83RB9|RNFC_SHIFL RecName: Full=Electron transport complex protein rnfC
 gi|122366544|sp|Q0T4E8|RNFC_SHIF8 RecName: Full=Electron transport complex protein rnfC
 gi|24051983|gb|AAN43236.1| putative membrane protein [Shigella flexneri 2a str. 301]
 gi|30041393|gb|AAP17122.1| putative membrane protein [Shigella flexneri 2a str. 2457T]
 gi|110615150|gb|ABF03817.1| putative membrane protein [Shigella flexneri 5 str. 8401]
 gi|281601063|gb|ADA74047.1| Electron transport complex protein rnfC [Shigella flexneri 2002017]
 gi|332757136|gb|EGJ87476.1| electron transport complex protein rnfC [Shigella flexneri 4343-70]
 gi|332758063|gb|EGJ88388.1| electron transport complex protein rnfC [Shigella flexneri 2747-71]
 gi|333003991|gb|EGK23526.1| electron transport complex protein rnfC [Shigella flexneri K-218]
          Length = 740

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 39/112 (34%), Gaps = 13/112 (11%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CP   +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPVD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            I     F     E A   ++E     +R      R+E+   R +  +   R
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEE-----KRAAEAKARFEARQAR-LEREKATR 474


>gi|21673683|ref|NP_661748.1| putative glutamate synthase (NADPH) small subunit [Chlorobium
           tepidum TLS]
 gi|21646803|gb|AAM72090.1| iron-sulfur cluster-binding protein, gltD family [Chlorobium
           tepidum TLS]
          Length = 577

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/96 (17%), Positives = 28/96 (29%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
           +  +AK T   P                 +     +RC++C  C       +   +    
Sbjct: 477 HTPQAKRTSIKPEVVVGNHDELLEALTPEQAVTESKRCMSCGFCFDCKQCVSFCPQEAIT 536

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
                    +   +  KC+ C LC   CP   I  G
Sbjct: 537 RFRDNPAGEKVYTNYAKCVGCHLCSLVCPCGYIQMG 572


>gi|301021088|ref|ZP_07185129.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 69-1]
 gi|331673675|ref|ZP_08374438.1| putative oxidoreductase [Escherichia coli TA280]
 gi|300398269|gb|EFJ81807.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 69-1]
 gi|331068948|gb|EGI40340.1| putative oxidoreductase [Escherichia coli TA280]
          Length = 411

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +       ++C+ C  C   C         G +  + + +T     +  K
Sbjct: 324 VPAEDLDRSYIVYPHINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 378 CVGCLLCGHVCPVGCIDLG 396


>gi|256822166|ref|YP_003146129.1| RnfABCDGE type electron transport complex subunit C [Kangiella
           koreensis DSM 16069]
 gi|256795705|gb|ACV26361.1| electron transport complex, RnfABCDGE type, C subunit [Kangiella
           koreensis DSM 16069]
          Length = 539

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 32/90 (35%), Gaps = 2/90 (2%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            CI C  C  +CPA  +  +               + D+  CI CG C   CP   I   
Sbjct: 375 PCIRCGACMDVCPASLLPQQLYWHAKS-DEFEKAEEYDLFDCIECGACAYVCP-SDIPLV 432

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESE 151
             + +A  T +    +K +      R E+ 
Sbjct: 433 QYYRYAKSTIRNQKVEKTKADKARLRHEAR 462



 Score = 37.0 bits (84), Expect = 0.93,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 7/45 (15%)

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVE-------GPNFEFATE 129
           + +++D   + CI CG C + CP   + +          FE A E
Sbjct: 365 KELKHDHLALPCIRCGACMDVCPASLLPQQLYWHAKSDEFEKAEE 409


>gi|225569031|ref|ZP_03778056.1| hypothetical protein CLOHYLEM_05110 [Clostridium hylemonae DSM
           15053]
 gi|225161830|gb|EEG74449.1| hypothetical protein CLOHYLEM_05110 [Clostridium hylemonae DSM
           15053]
          Length = 595

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 35/97 (36%), Gaps = 15/97 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            +RY F+ +   +   +K           AL  Y    ++C  C LC   CP  AI+   
Sbjct: 512 TMRY-FRDEYVAHIVDKKCPAGVC----KALLSYKIDADKCKGCTLCARTCPNDAISGAV 566

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
                        + I   KC+ CG C E C   AI 
Sbjct: 567 KEP----------HVIHQDKCVKCGACMEKCRFGAIY 593


>gi|27228278|gb|AAN85588.1| trichloroethene reductive dehalogenase [Dehalococcoides sp. FL2]
          Length = 554

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 3/60 (5%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID---MIKCIYCGLCQEACPVD 116
            E C  C +C   CP QAI+ E              Y+       KC  C +C+  CP  
Sbjct: 434 REFCKTCGICAEHCPTQAISHEGPRYDSPHWDCVSGYEGWHLDYHKCTNCTICEAVCPFF 493



 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 103 CIYCGLCQEACPVDAI-VEGPNFE 125
           C  CG+C E CP  AI  EGP ++
Sbjct: 437 CKTCGICAEHCPTQAISHEGPRYD 460


>gi|304314565|ref|YP_003849712.1| polyferredoxin [Methanothermobacter marburgensis str. Marburg]
 gi|6996551|emb|CAB75573.1| polyferredoxin [Methanothermobacter thermautotrophicus]
 gi|302588024|gb|ADL58399.1| polyferredoxin [Methanothermobacter marburgensis str. Marburg]
          Length = 251

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 28/82 (34%), Gaps = 12/82 (14%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
            R     ++C AC  CE  CP  AI +                      CI CG C   C
Sbjct: 124 MRDIQVTDKCTACGTCERFCPTGAIRVGETAAVDR------------SICIGCGACVNVC 171

Query: 114 PVDAIVEGPNFEFATETRQELY 135
           P DAI          ETR+ + 
Sbjct: 172 PSDAIKLERELGPVIETRRLMV 193



 Score = 42.4 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 3/64 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI C  C  +CP+ AI +E        TRR +    D   C+ C +C+E CP  AI
Sbjct: 157 DRSICIGCGACVNVCPSDAIKLERELGPVIETRRLMV---DQDACVECLVCEENCPTGAI 213

Query: 119 VEGP 122
               
Sbjct: 214 RIED 217



 Score = 38.2 bits (87), Expect = 0.36,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 32/85 (37%), Gaps = 11/85 (12%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +              RR    ++ C+ C +CE  CP  AI IE G    DG      
Sbjct: 171 CPSDAIKLERELGPVIETRRLMVDQDACVECLVCEENCPTGAIRIEDGEVVVDG------ 224

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVE 120
                 KCI C +C   CPV A+  
Sbjct: 225 -----DKCILCEVCSSKCPVAALKL 244



 Score = 38.2 bits (87), Expect = 0.40,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 13/86 (15%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           + +   +C+ C LC   CP  AI+  S  R              +  C+ C +C + CPV
Sbjct: 43  FIDITPKCVRCNLCVEECPVDAISDSSASRAAR----------ILDNCVKCEICAQTCPV 92

Query: 116 DAIVEGPNFEFATETRQELYYDKERL 141
             I      E      +++ Y+ E L
Sbjct: 93  RCI---NVVESTATIDEDVTYNLEYL 115


>gi|89893786|ref|YP_517273.1| hypothetical protein DSY1040 [Desulfitobacterium hafniense Y51]
 gi|89333234|dbj|BAE82829.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 422

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 6/60 (10%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  CE +CP  AI++ +               +D   C+ CG+C  +CP   I  
Sbjct: 293 QECIGCGKCEKVCPVLAISMSTNAEGK------KIAQVDHEVCLGCGICVRSCPKKVIEL 346



 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 12/23 (52%), Positives = 14/23 (60%)

Query: 103 CIYCGLCQEACPVDAIVEGPNFE 125
           CI CG C++ CPV AI    N E
Sbjct: 295 CIGCGKCEKVCPVLAISMSTNAE 317


>gi|89067347|ref|ZP_01154860.1| dihydropyrimidine dehydrogenase [Oceanicola granulosus HTCC2516]
 gi|89046916|gb|EAR52970.1| dihydropyrimidine dehydrogenase [Oceanicola granulosus HTCC2516]
          Length = 434

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 8/95 (8%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI C  C A C       E              +++   +C+ 
Sbjct: 330 QYLNLNYVTKARIDQDLCIKCGRCYAAC-------EDTSHQAIAFNPGRTFEVIDEECVA 382

Query: 106 CGLCQEACPV-DAIVEGPNFEFATETRQELYYDKE 139
           C LC + CPV D I      +   + R      KE
Sbjct: 383 CNLCVDVCPVEDCITMVELDDGTVDPRTGKVVQKE 417


>gi|253565123|ref|ZP_04842579.1| pyruvate-flavodoxin oxidoreductase [Bacteroides sp. 3_2_5]
 gi|251946588|gb|EES86965.1| pyruvate-flavodoxin oxidoreductase [Bacteroides sp. 3_2_5]
          Length = 1184

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 27/81 (33%), Gaps = 15/81 (18%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG  A     N  E CI C  C  +CP                A               T
Sbjct: 676 RGVAAFVPEWN-AENCIQCNKCAYVCPHASIRPFVLDAEEQKGANFEMLKAVGKQFDGMT 734

Query: 94  VRYDIDMIKCIYCGLCQEACP 114
            R  +D++ C+ CG C + CP
Sbjct: 735 FRIQVDVLDCLGCGNCADICP 755


>gi|218780880|ref|YP_002432198.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218762264|gb|ACL04730.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 366

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 9/68 (13%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
             YP   E C+ C  C   C   A+T++           T R  ++  +CI CG+C   C
Sbjct: 284 NFYPVAGEDCVGCGTCTERCFFNALTVDEE---------TERAVVNPDECIGCGVCALGC 334

Query: 114 PVDAIVEG 121
           P  A+   
Sbjct: 335 PTGALKLQ 342


>gi|157375411|ref|YP_001474011.1| putative glutamate synthase (NADPH) small subunit [Shewanella
           sediminis HAW-EB3]
 gi|157317785|gb|ABV36883.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Shewanella sediminis HAW-EB3]
          Length = 542

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 20/59 (33%), Gaps = 9/59 (15%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            C  C  C   CP QAI      R          Y ID  +C  C  C   CP  AI  
Sbjct: 489 NCFECDGCYGACPEQAIIKLGEGRF---------YQIDYSRCTGCTACTLQCPTGAIHM 538


>gi|82734596|gb|ABB89705.1| trichloroethene reductive dehalogenase [Dehalococcoides sp.
           SFR-cis-DCE]
 gi|82734599|gb|ABB89707.1| trichloroethene reductive dehalogenase [Dehalococcoides sp.
           SNR-PCE]
          Length = 554

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 3/60 (5%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID---MIKCIYCGLCQEACPVD 116
            E C  C +C   CP QAI+ E              Y+       KC  C +C+  CP  
Sbjct: 434 REFCKTCGICAEHCPTQAISHEGPRYDSPHWDCVSGYEGWHLDYHKCTNCTICEAVCPFF 493



 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 103 CIYCGLCQEACPVDAI-VEGPNFE 125
           C  CG+C E CP  AI  EGP ++
Sbjct: 437 CKTCGICAEHCPTQAISHEGPRYD 460


>gi|91786836|ref|YP_547788.1| 4Fe-4S ferredoxin [Polaromonas sp. JS666]
 gi|91696061|gb|ABE42890.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Polaromonas sp.
           JS666]
          Length = 695

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 30/103 (29%), Gaps = 9/103 (8%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
           + P          R            + C  C  C + CPA A+             +  
Sbjct: 537 HAPAALPEAIELPRSGSPFGSLVVNTDTCTLCLSCVSACPASALQDNPERPQLKFIEKN- 595

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
                   C+ CGLC   CP DAI   P      + ++    +
Sbjct: 596 --------CVQCGLCAVTCPEDAITLQPRLLLTPQRKEARVLN 630



 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 9/55 (16%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C  C  IC A A++ +   +         +  ++   CI CG C   CP  A+
Sbjct: 307 VGCNACIDICSAGAVSSQKERQ---------QIVVNPNLCIGCGACTTVCPTGAL 352



 Score = 37.4 bits (85), Expect = 0.62,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 12/31 (38%)

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           + T    ID+  C  C  C   CP  AI   
Sbjct: 170 KWTKDNPIDLDLCTRCNACVAVCPEGAIDLS 200



 Score = 34.7 bits (78), Expect = 4.5,   Method: Composition-based stats.
 Identities = 26/136 (19%), Positives = 41/136 (30%), Gaps = 29/136 (21%)

Query: 16  FVGAFFLC-LRYFFKAKTTINYPFEKGSTSPRFRGEHALRRY------------PNGEER 62
              A  +           + ++P ++           +L+ +            P   + 
Sbjct: 122 LADALDVTIFSQGVADPASGDFPAQERKYPVISGTGLSLQGWLGAFEAKWTKDNPIDLDL 181

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-AIVEG 121
           C  C  C A+CP  AI               + Y +D  KC     C   C V  AI   
Sbjct: 182 CTRCNACVAVCPEGAID--------------LSYQVDSSKCTSHRDCVAVCKVAGAIDFN 227

Query: 122 PNFEFATETRQELYYD 137
              + ATE   +L  D
Sbjct: 228 REAQAATEAF-DLVLD 242


>gi|53714618|ref|YP_100610.1| pyruvate-flavodoxin oxidoreductase [Bacteroides fragilis YCH46]
 gi|60682637|ref|YP_212781.1| putative pyruvate-flavodoxin oxidoreductase [Bacteroides fragilis
           NCTC 9343]
 gi|265765918|ref|ZP_06093959.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides sp.
           2_1_16]
 gi|52217483|dbj|BAD50076.1| pyruvate-flavodoxin oxidoreductase [Bacteroides fragilis YCH46]
 gi|60494071|emb|CAH08863.1| putative pyruvate-flavodoxin oxidoreductase [Bacteroides fragilis
           NCTC 9343]
 gi|263253586|gb|EEZ25051.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides sp.
           2_1_16]
 gi|301164114|emb|CBW23670.1| putative pyruvate-flavodoxin oxidoreductase [Bacteroides fragilis
           638R]
          Length = 1184

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 27/81 (33%), Gaps = 15/81 (18%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG  A     N  E CI C  C  +CP                A               T
Sbjct: 676 RGVAAFVPEWN-AENCIQCNKCAYVCPHASIRPFVLDAEEQKGANFEMLKAVGKQFDGMT 734

Query: 94  VRYDIDMIKCIYCGLCQEACP 114
            R  +D++ C+ CG C + CP
Sbjct: 735 FRIQVDVLDCLGCGNCADICP 755


>gi|2209070|dbj|BAA20528.1| indolepyruvate ferredoxin oxidoreductase alpha subunit [Pyrococcus
           sp.]
          Length = 647

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 26/78 (33%), Gaps = 9/78 (11%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R       Y   E++C  CK+C       AI  +   +            +D   C  CG
Sbjct: 579 RRGMKWPIYHVVEDKCTGCKICIKTYGCPAIYWDPETKKA---------KVDPTMCWGCG 629

Query: 108 LCQEACPVDAIVEGPNFE 125
            C + CP DA       E
Sbjct: 630 GCAQVCPFDAFEPMKEGE 647


>gi|332528159|ref|ZP_08404190.1| putative glutamate synthase (NADPH) small subunit [Rubrivivax
           benzoatilyticus JA2]
 gi|332112730|gb|EGJ12523.1| putative glutamate synthase (NADPH) small subunit [Rubrivivax
           benzoatilyticus JA2]
          Length = 541

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 10/59 (16%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            C+ C  C  +CP  A+   +            RY +D   C  CGLC   CP  AI  
Sbjct: 488 NCLQCDNCYGVCPDNAVKKLA----------PGRYAVDYDYCKGCGLCAVECPCGAIDM 536


>gi|304394102|ref|ZP_07376025.1| formate dehydrogenase, alpha subunit [Ahrensia sp. R2A130]
 gi|303293542|gb|EFL87919.1| formate dehydrogenase, alpha subunit [Ahrensia sp. R2A130]
          Length = 931

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 5/77 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM----IKCIYCGLCQEACP 114
             + CIAC LC   C  +    +       G      +DI        C+ CG C +ACP
Sbjct: 151 NMDACIACNLCVRACR-EVQVNDVLGMADRGHHSVPVFDIHDPMGVSTCVTCGECVQACP 209

Query: 115 VDAIVEGPNFEFATETR 131
             A+ E    +    TR
Sbjct: 210 TGALFEKTLMDADNRTR 226



 Score = 35.1 bits (79), Expect = 3.2,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK-CIYCGL-CQ 110
              P G   C+ C  C   CP  A+  ++     + TR    +D      C +CG+ CQ
Sbjct: 189 IHDPMGVSTCVTCGECVQACPTGALFEKTLMDADNRTRVIEDFDAKTDSVCPFCGVGCQ 247


>gi|289192303|ref|YP_003458244.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
 gi|288938753|gb|ADC69508.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
          Length = 391

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            + +CI C +C   CP  AI   +G       +   +++++  KCIYC  C E CP + I
Sbjct: 164 DKSKCIYCSICAQTCPWNAIF-VAGKIPKKRRKEVKKFEVNAEKCIYCLKCVEVCPGNMI 222

Query: 119 VEGPN 123
                
Sbjct: 223 KVDKE 227



 Score = 41.6 bits (96), Expect = 0.035,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 3/73 (4%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
             +    C  C  C   CP  A+            ++  R      KC  CG C EACP+
Sbjct: 26  DIDNFNVCNLCMECVKACPTGALV---EEEIEINGKKLKRVSYLAHKCEKCGNCAEACPI 82

Query: 116 DAIVEGPNFEFAT 128
                  +F ++ 
Sbjct: 83  GIKKVDDDFPYSK 95



 Score = 40.5 bits (93), Expect = 0.086,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 21/64 (32%), Gaps = 3/64 (4%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             +         CI C  C   CP  A+ +    +     +   R +     C  CG C 
Sbjct: 291 IVVDEDKKEVRMCIVCGACTVACPTGALKL---GKIEHNGKEYNRIEFSPYLCDKCGKCV 347

Query: 111 EACP 114
           E CP
Sbjct: 348 EVCP 351



 Score = 38.5 bits (88), Expect = 0.28,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 11/80 (13%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
            G      R   A +      E C+ C +C   CP  AIT+E G              ID
Sbjct: 116 PGVIDKPKREVKAPKEPIVVTEACVGCGICVPECPVSAITLEDGKAV-----------ID 164

Query: 100 MIKCIYCGLCQEACPVDAIV 119
             KCIYC +C + CP +AI 
Sbjct: 165 KSKCIYCSICAQTCPWNAIF 184


>gi|269119252|ref|YP_003307429.1| hydrogenase, Fe-only [Sebaldella termitidis ATCC 33386]
 gi|268613130|gb|ACZ07498.1| hydrogenase, Fe-only [Sebaldella termitidis ATCC 33386]
          Length = 587

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 59  GEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
             ++CI C+ CE +C       A++  +           +  D++   C YCG C   CP
Sbjct: 150 DMDKCIMCRRCETMCNEVQTVGALSGVNRG-FDAVVAPAMEMDLNDSVCTYCGQCVAVCP 208

Query: 115 VDAIVEGP 122
             A+VE  
Sbjct: 209 TGALVERD 216


>gi|255505858|ref|ZP_05348533.3| iron-sulfur cluster-binding protein [Bryantella formatexigens DSM
           14469]
 gi|255265431|gb|EET58636.1| iron-sulfur cluster-binding protein [Bryantella formatexigens DSM
           14469]
          Length = 422

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           RR    ++ CI C +C   CP        G   +    R      D  KCI C  CQE C
Sbjct: 358 RRPRIDKKLCIRCGVCVEHCPV------PGKAVNFKNGRKEPPVYDYKKCIRCYCCQEMC 411

Query: 114 PVDAI 118
           P  AI
Sbjct: 412 PRHAI 416


>gi|189467142|ref|ZP_03015927.1| hypothetical protein BACINT_03526 [Bacteroides intestinalis DSM
           17393]
 gi|189435406|gb|EDV04391.1| hypothetical protein BACINT_03526 [Bacteroides intestinalis DSM
           17393]
          Length = 635

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 10/67 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L  Y    E CI C LC   CPA AI  +              + I+  KCI CG+C   
Sbjct: 577 LLTYTINPELCIGCHLCFKHCPADAILGD----------VRKPHVINPDKCIKCGMCMAR 626

Query: 113 CPVDAIV 119
           C   AI 
Sbjct: 627 CKFKAIN 633


>gi|114571228|ref|YP_757908.1| formate dehydrogenase subunit alpha [Maricaulis maris MCS10]
 gi|114341690|gb|ABI66970.1| formate dehydrogenase alpha subunit [Maricaulis maris MCS10]
          Length = 951

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 26/79 (32%), Gaps = 2/79 (2%)

Query: 55  RYPNGEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
            +     +CI C  C   C      + +    R  D        D    +C+ CG C +A
Sbjct: 160 YFDFEPSKCIVCSRCVRACDEVQGTLALTVEGRGFDSHISVGGPDFFNSECVSCGACVQA 219

Query: 113 CPVDAIVEGPNFEFATETR 131
           CP   + E    E     R
Sbjct: 220 CPTATLQEKTVVEHGVPDR 238


>gi|20807413|ref|NP_622584.1| ferredoxin 3 [Thermoanaerobacter tengcongensis MB4]
 gi|20515935|gb|AAM24188.1| Ferredoxin 3 [Thermoanaerobacter tengcongensis MB4]
          Length = 74

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/62 (38%), Positives = 27/62 (43%), Gaps = 11/62 (17%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               E CI+C  C A CP  AI    G            Y+ID  KCI CG C+  CP  
Sbjct: 21  HYITEECISCGACAAECPVDAIYEGDGK-----------YEIDPEKCIDCGACEAVCPTG 69

Query: 117 AI 118
           AI
Sbjct: 70  AI 71


>gi|51246231|ref|YP_066115.1| hydrogenase [Desulfotalea psychrophila LSv54]
 gi|50877268|emb|CAG37108.1| related to hydrogenase [Desulfotalea psychrophila LSv54]
          Length = 483

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 24/68 (35%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGT------RRTVRYDIDMIKCIYCGLCQ 110
                 CI C  C  +CP  AI     P              + R  ID   CI+CG C 
Sbjct: 144 HIDSNLCINCGKCLKVCPYHAIVQIPIPCEVACPIGAISKDVSGRQVIDYDLCIFCGKCM 203

Query: 111 EACPVDAI 118
             CP  A+
Sbjct: 204 AQCPFAAV 211



 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 13/72 (18%)

Query: 54  RRYPNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           R +      C  C  + C   CP  AIT+  G              ID   CI CG C +
Sbjct: 110 RTHYEVTNACQGCLAQACIQSCPKDAITMVQGKSH-----------IDSNLCINCGKCLK 158

Query: 112 ACPVDAIVEGPN 123
            CP  AIV+ P 
Sbjct: 159 VCPYHAIVQIPI 170


>gi|16082047|ref|NP_394472.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit related
           protein [Thermoplasma acidophilum DSM 1728]
 gi|10640327|emb|CAC12141.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit related
           protein [Thermoplasma acidophilum]
          Length = 605

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 20/62 (32%), Gaps = 11/62 (17%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
                RC  C +C       +I   S  +                 CI CG C E CP +
Sbjct: 539 YVDSNRCTGCTICYDFFTCPSILPLSNKKATI-----------DDSCIGCGACVEVCPFN 587

Query: 117 AI 118
           AI
Sbjct: 588 AI 589


>gi|93005680|ref|YP_580117.1| electron transport complex, RnfABCDGE type, B subunit
           [Psychrobacter cryohalolentis K5]
 gi|92393358|gb|ABE74633.1| electron transport complex, RnfABCDGE type, B subunit
           [Psychrobacter cryohalolentis K5]
          Length = 280

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 33/104 (31%), Gaps = 14/104 (13%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C   CP  AI                 + I    C  C LC   CPVD I  
Sbjct: 123 DDCIGCTKCIPACPVDAIVGTGK----------HMHTIFTDLCTGCELCIAPCPVDCIDL 172

Query: 121 -GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
                  +T  R     ++E L        + + + +   S  R
Sbjct: 173 VTVERTLSTPER---TLEQEDLRQRYHTHLNRVSKQLADSSNSR 213



 Score = 38.9 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 16/37 (43%), Positives = 16/37 (43%)

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
           VR  I    CI C  C  ACPVDAIV          T
Sbjct: 116 VRAVIREDDCIGCTKCIPACPVDAIVGTGKHMHTIFT 152


>gi|332305735|ref|YP_004433586.1| electron transport complex, RnfABCDGE type, C subunit [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332173064|gb|AEE22318.1| electron transport complex, RnfABCDGE type, C subunit [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 862

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 2/98 (2%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C   CPA  +  +               D ++  CI CG C   CP   I  
Sbjct: 385 QPCIRCSACADACPAS-LLPQQLFWHSKAKELDKAQDYNLFDCIECGACAYVCP-SEIPL 442

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158
              +  A    +    +K++     +R+ES   R +  
Sbjct: 443 VHYYRVAKAEIRVEQEEKQKSDKARERFESRAARLVRE 480


>gi|317490042|ref|ZP_07948533.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|316910883|gb|EFV32501.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
          Length = 267

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 11/56 (19%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           CI C+ C   CP Q+IT+E+               ID   CI CG C E CP  AI
Sbjct: 217 CIGCQKCAKTCPTQSITVENNLA-----------RIDTDTCIGCGTCIEVCPTHAI 261



 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 8/73 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK--------CIYCGLCQ 110
               C  C  C  ICP   I++         +  T +  +   K        CI C  C 
Sbjct: 165 DTAACTGCGTCAKICPRGIISMVDQASSPTASVVTCKNTMAGAKTRKVCSVGCIGCQKCA 224

Query: 111 EACPVDAIVEGPN 123
           + CP  +I    N
Sbjct: 225 KTCPTQSITVENN 237



 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 21/61 (34%), Gaps = 11/61 (18%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+    C   CP  AI +E+G              ID   C  CG C + CP   I    
Sbjct: 140 CLGYGDCAEACPFDAIVVENG-----------VARIDTAACTGCGTCAKICPRGIISMVD 188

Query: 123 N 123
            
Sbjct: 189 Q 189


>gi|300691785|ref|YP_003752780.1| dihydroorotate dehydrogenase, FMN-linked, 4Fe-4S ferredoxin-type
           protein [Ralstonia solanacearum PSI07]
 gi|299078845|emb|CBJ51506.1| putative dihydroorotate dehydrogenase, FMN-linked, 4Fe-4S
           ferredoxin-type protein [Ralstonia solanacearum PSI07]
          Length = 435

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 6/63 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117
            ++RCI C LC   C     + ++  R  DG R    +++   +C+ C LC   CPV   
Sbjct: 341 DQDRCIQCGLCHIACED--TSHQAITREKDGKR---HFEVIDAECVGCNLCMHVCPVEQC 395

Query: 118 IVE 120
           I  
Sbjct: 396 ITM 398


>gi|283833246|ref|ZP_06352987.1| electron transport complex protein RnfC [Citrobacter youngae ATCC
           29220]
 gi|291070882|gb|EFE08991.1| electron transport complex protein RnfC [Citrobacter youngae ATCC
           29220]
          Length = 674

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 35/107 (32%), Gaps = 9/107 (8%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP   I
Sbjct: 373 EEKGCIRCSACADACPAD-LLPQQLYWFSKGQQHDKSTTHNIADCIECGACAWVCP-SNI 430

Query: 119 VEGPNFE------FATETRQELYYD-KERLLNNGDRWESEIVRNIVT 158
                F       +A    ++   + K R      R E E    +  
Sbjct: 431 PLVQYFRQEKAEIYAISQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|265750656|ref|ZP_06086719.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
 gi|263237552|gb|EEZ23002.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA]
          Length = 403

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 6/62 (9%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +      +++C AC  C  IC ++AI +          +      ID+ KCI CGLC++ 
Sbjct: 1   MINLSKIKKKCYACGACINICHSKAINMHEDEYGFSYPK------IDLEKCIECGLCEKV 54

Query: 113 CP 114
           CP
Sbjct: 55  CP 56


>gi|257790458|ref|YP_003181064.1| electron transport complex, RnfABCDGE type, B subunit [Eggerthella
           lenta DSM 2243]
 gi|257474355|gb|ACV54675.1| electron transport complex, RnfABCDGE type, B subunit [Eggerthella
           lenta DSM 2243]
          Length = 267

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 11/56 (19%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           CI C+ C   CP Q+IT+E+               ID   CI CG C E CP  AI
Sbjct: 217 CIGCQKCAKTCPTQSITVENNLA-----------RIDTDTCIGCGTCIEVCPTHAI 261



 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 8/73 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK--------CIYCGLCQ 110
               C  C  C  ICP   I++         +  T +  +   K        CI C  C 
Sbjct: 165 DTAACTGCGTCAKICPRGIISMVDQASSPTASVVTCKNTMAGAKTRKVCSVGCIGCQKCA 224

Query: 111 EACPVDAIVEGPN 123
           + CP  +I    N
Sbjct: 225 KTCPTQSITVENN 237



 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 21/61 (34%), Gaps = 11/61 (18%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+    C   CP  AI +E+G              ID   C  CG C + CP   I    
Sbjct: 140 CLGYGDCAEACPFDAIVVENG-----------VARIDTAACTGCGTCAKICPRGIISMVD 188

Query: 123 N 123
            
Sbjct: 189 Q 189


>gi|224541365|ref|ZP_03681904.1| hypothetical protein CATMIT_00525 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525699|gb|EEF94804.1| hypothetical protein CATMIT_00525 [Catenibacterium mitsuokai DSM
           15897]
          Length = 345

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 15/65 (23%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           Y    +RCI C  CE ICP + I  E                ID+ +C++CG C E CPV
Sbjct: 143 YYTITDRCIHCGKCETICPQRCIHNE---------------VIDVAQCLHCGACLEICPV 187

Query: 116 DAIVE 120
            AI  
Sbjct: 188 QAIEF 192


>gi|213646116|ref|ZP_03376169.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
          Length = 335

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +      +E+C+ C  C   C         G +  +    +     +  K
Sbjct: 248 IPAEDLDRSYIVYPRINQEKCVGCGRCYISCYDG------GHQAMEWDEHSHTPHCNTEK 301

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 302 CVGCLLCGHVCPVACIDLG 320


>gi|27228284|gb|AAN85592.1| trichloroethene reductive dehalogenase [bacterium PM-VC1]
          Length = 554

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 3/60 (5%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID---MIKCIYCGLCQEACPVD 116
            E C  C +C   CP QAI+ E              Y+       KC  C +C+  CP  
Sbjct: 434 REFCKTCGICAEHCPTQAISHEGPRYDSPHWDCVSGYEGWHLDYHKCTNCTICEAVCPFF 493



 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 103 CIYCGLCQEACPVDAI-VEGPNFE 125
           C  CG+C E CP  AI  EGP ++
Sbjct: 437 CKTCGICAEHCPTQAISHEGPRYD 460


>gi|333002866|gb|EGK22422.1| hypothetical protein SFK272_2909 [Shigella flexneri K-272]
          Length = 380

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +       ++C+ C  C   C         G +  + + +T     +  K
Sbjct: 293 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 346

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 347 CVGCLLCGHVCPVGCIELG 365


>gi|332559555|ref|ZP_08413877.1| formate dehydrogenase, alpha subunit [Rhodobacter sphaeroides WS8N]
 gi|332277267|gb|EGJ22582.1| formate dehydrogenase, alpha subunit [Rhodobacter sphaeroides WS8N]
          Length = 960

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 29/92 (31%), Gaps = 4/92 (4%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDID 99
                 + +   +     +CI C  C   C       A+TIE        +         
Sbjct: 162 PQWMAKDESNPYFTYDPSKCIVCSRCVRACEEVQGTFALTIEGRGFDSRVSAGMASDSFL 221

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
              C+ CG C +ACP   + E    E  T  R
Sbjct: 222 TSDCVSCGACVQACPTATLQEKSVIEIGTPER 253


>gi|325288356|ref|YP_004264537.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324963757|gb|ADY54536.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 1178

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/118 (19%), Positives = 36/118 (30%), Gaps = 30/118 (25%)

Query: 51  HALRRYPNGEERCIACKLCEAICPA--------QAITIESGPRCHDGTRR--------TV 94
            A+      +E CI C  C  +CP          A  ++  P   +  +           
Sbjct: 679 IAVTIPRWIKENCIQCNQCSYVCPHATIRPFLLDADEVKKAPAGFETIKASGKELEGLQY 738

Query: 95  RYDIDMIKCIYCGLCQEACPV--DAIVEGP------------NFEFATETRQELYYDK 138
           R  +  + C  CG C E CP    A+V  P            N+      +     +K
Sbjct: 739 RIQVTPLDCTGCGNCAEICPAKQKALVMKPAAEETEAEIPNWNYALTVSDKDNRIANK 796


>gi|293446497|ref|ZP_06662919.1| yeiA protein [Escherichia coli B088]
 gi|291323327|gb|EFE62755.1| yeiA protein [Escherichia coli B088]
          Length = 335

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +       ++C+ C  C   C         G +  + + +T     +  K
Sbjct: 248 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 301

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 302 CVGCLLCGHVCPVGCIELG 320


>gi|221057394|ref|XP_002261205.1| RNAse L inhibitor protein [Plasmodium knowlesi strain H]
 gi|194247210|emb|CAQ40610.1| RNAse L inhibitor protein, putative [Plasmodium knowlesi strain H]
          Length = 619

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 1/70 (1%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           LR      ++C   K C   C      +++G  C +    +    I    CI CG+C + 
Sbjct: 20  LRIAIVSTDKCKP-KKCHLECKKNCPIVKTGKFCIEVEHASKIAYISETLCIGCGICVKK 78

Query: 113 CPVDAIVEGP 122
           CP  AI    
Sbjct: 79  CPFAAITIIN 88


>gi|182419999|ref|ZP_02951233.1| hydrogenase-1 [Clostridium butyricum 5521]
 gi|237669483|ref|ZP_04529463.1| hydrogenase-1 [Clostridium butyricum E4 str. BoNT E BL5262]
 gi|149384911|gb|ABR25256.1| hydrogenase [Clostridium butyricum]
 gi|182376036|gb|EDT73623.1| hydrogenase-1 [Clostridium butyricum 5521]
 gi|188530086|gb|ACD62594.1| FeFe hydrogenase [Clostridium butyricum]
 gi|237654927|gb|EEP52487.1| hydrogenase-1 [Clostridium butyricum E4 str. BoNT E BL5262]
          Length = 574

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 3/78 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPV 115
              +C+ C  C A C  +  T           R+    +    D   C+ CG C  ACPV
Sbjct: 143 DRSKCVLCGRCVAACKEKTGTGNIEISGKGPDRKVQAIEGKCFDETNCLLCGQCVAACPV 202

Query: 116 DAIVEGPNFEFATETRQE 133
            A+ E P+ +   E  ++
Sbjct: 203 AALNEKPHIDRVKEALED 220


>gi|126466337|ref|YP_001041446.1| pyruvate ferredoxin oxidoreductase, delta subunit [Staphylothermus
           marinus F1]
 gi|126015160|gb|ABN70538.1| pyruvate ferredoxin oxidoreductase, delta subunit [Staphylothermus
           marinus F1]
          Length = 96

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 11/65 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            + +C+ C LC   CP  AI  +                ++   C  CG+C   CPV+AI
Sbjct: 40  DQGKCVKCMLCWLFCPDMAIIWDGEKIV-----------VNYDYCKGCGICAHECPVNAI 88

Query: 119 VEGPN 123
              P 
Sbjct: 89  SMVPE 93


>gi|15679144|ref|NP_276261.1| polyferredoxin (MvhB) [Methanothermobacter thermautotrophicus str.
           Delta H]
 gi|41017307|sp|Q50784|MVHB_METTH RecName: Full=Polyferredoxin protein mvhB
 gi|2622237|gb|AAB85622.1| polyferredoxin (MvhB) [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 412

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ CI C +C   CP  A+   SG +     +   ++++D   CI C  C EACP D I
Sbjct: 173 DEDTCIKCGVCAQTCPWNAVY-ISGRKPEKRAKEIKKFELDEDACIGCNTCVEACPGDFI 231



 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 1/65 (1%)

Query: 60  EERCIACKLCEAICPAQAIT-IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              C  C  C   CP  A++ ++          +  R   +   C  CG C EACP D +
Sbjct: 322 FAMCTRCGACTVACPKGALSLVDMDKVVDGEVVKRKRVQYNPALCDQCGDCIEACPYDML 381

Query: 119 VEGPN 123
                
Sbjct: 382 KLTDE 386



 Score = 42.4 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 1/63 (1%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           +  C+ C+ C  ICP   I +E                I +  C+ CG+C   CPVDAI 
Sbjct: 104 QGFCVMCQKCVDICPVGVIGVEGIKEPAKVELEIEGP-IFIADCVGCGMCVPECPVDAIT 162

Query: 120 EGP 122
              
Sbjct: 163 LDK 165



 Score = 40.9 bits (94), Expect = 0.058,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 9/60 (15%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C+ C +C   CP  AIT++         +     +ID   CI CG+C + CP +A+   
Sbjct: 145 DCVGCGMCVPECPVDAITLD---------KVGGVIEIDEDTCIKCGVCAQTCPWNAVYIS 195



 Score = 37.8 bits (86), Expect = 0.51,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 23/65 (35%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
             EE+C     C  ICP  AI + +           V  +     C  CG C  ACP  A
Sbjct: 280 WDEEKCDFIGACANICPNDAIRVVTKEGMKVPDNEKVDEEPSFAMCTRCGACTVACPKGA 339

Query: 118 IVEGP 122
           +    
Sbjct: 340 LSLVD 344



 Score = 35.8 bits (81), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 24/66 (36%), Gaps = 4/66 (6%)

Query: 52  ALRRYPNGEERCIACK---LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           A+   P     C  C     C  ICP  A+ +E       G     R   +  KC  CG 
Sbjct: 23  AIEVTPEDVIYCDICGGEPKCVDICPTGALKLEDLVVDEAGNT-QGRIVFNPDKCNECGD 81

Query: 109 CQEACP 114
           C E CP
Sbjct: 82  CVEVCP 87



 Score = 35.1 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 17/64 (26%), Gaps = 12/64 (18%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
                 C  C  C   CP   + +        G             CI C  C  ACP  
Sbjct: 360 QYNPALCDQCGDCIEACPYDMLKLTDEKVPLKGF------------CILCDQCIPACPKG 407

Query: 117 AIVE 120
           A+  
Sbjct: 408 ALSL 411



 Score = 34.7 bits (78), Expect = 4.2,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 11/23 (47%)

Query: 101 IKCIYCGLCQEACPVDAIVEGPN 123
             CI CG CQ  CP  AI   P 
Sbjct: 7   EDCIRCGACQGTCPTAAIEVTPE 29



 Score = 34.3 bits (77), Expect = 5.5,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 9/70 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++C  C  C  +CP Q + ++ G                   C+ C  C + CPV  I
Sbjct: 72  NPDKCNECGDCVEVCPPQILKLDEGKVKKVPL---------QGFCVMCQKCVDICPVGVI 122

Query: 119 VEGPNFEFAT 128
                 E A 
Sbjct: 123 GVEGIKEPAK 132


>gi|189466701|ref|ZP_03015486.1| hypothetical protein BACINT_03076 [Bacteroides intestinalis DSM
           17393]
 gi|189434965|gb|EDV03950.1| hypothetical protein BACINT_03076 [Bacteroides intestinalis DSM
           17393]
          Length = 597

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 6/65 (9%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
               + +  C  C  C  +C   AIT ++              ++D  KC  CGLC++ C
Sbjct: 1   MIDISDKAMCCGCNACGDVCAHDAITFKTDIEGFWYP------EVDKSKCTDCGLCEKVC 54

Query: 114 PVDAI 118
           P+  I
Sbjct: 55  PIINI 59


>gi|153853797|ref|ZP_01995153.1| hypothetical protein DORLON_01144 [Dorea longicatena DSM 13814]
 gi|149753547|gb|EDM63478.1| hypothetical protein DORLON_01144 [Dorea longicatena DSM 13814]
          Length = 1180

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 23/91 (25%), Gaps = 18/91 (19%)

Query: 58  NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRYDIDMIKC 103
              E CI C  C  +CP               +A                    +    C
Sbjct: 688 WQSENCIQCNRCAYVCPHAVIRPVALTEDELAKAPEGTKAIDMIGMPGMKFTMTVSAYDC 747

Query: 104 IYCGLCQEACP----VDAIVEGPNFEFATET 130
             CG C   CP      A+V     E A E 
Sbjct: 748 TGCGSCVNVCPGKKGEKALVMANMEENAAEQ 778


>gi|56751562|ref|YP_172263.1| bidirectional hydrogenase complex protein HoxU [Synechococcus
           elongatus PCC 6301]
 gi|56686521|dbj|BAD79743.1| NAD-reducing hydrogenase HoxS gamma subunit [Synechococcus
           elongatus PCC 6301]
          Length = 249

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 23/74 (31%), Gaps = 4/74 (5%)

Query: 54  RRYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLC 109
           R +     RCI C  C  +C     A   +   R                +  C  CG C
Sbjct: 150 RFFGLDHNRCILCTRCVRVCDEIEGAHVWDVAMRGEHCRIVAGMDQPWGAVDACTNCGKC 209

Query: 110 QEACPVDAIVEGPN 123
            +ACP  A+     
Sbjct: 210 IDACPTGALFHKGE 223



 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 8/82 (9%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIAC---KLCEAICPAQAITIESGPRCHDGTRR---- 92
           +     R+R +     +  G   C  C     CE    A A+ ++     +   +R    
Sbjct: 88  RSPRLERYRRQIVELFFAEGNHVCAICVANGNCELQDAAIAVGMDHSRYPYRFPKRDVDL 147

Query: 93  -TVRYDIDMIKCIYCGLCQEAC 113
               + +D  +CI C  C   C
Sbjct: 148 SHRFFGLDHNRCILCTRCVRVC 169


>gi|219670117|ref|YP_002460552.1| nitrite and sulphite reductase 4Fe-4S region [Desulfitobacterium
           hafniense DCB-2]
 gi|219540377|gb|ACL22116.1| nitrite and sulphite reductase 4Fe-4S region [Desulfitobacterium
           hafniense DCB-2]
          Length = 290

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 9/80 (11%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G     R    +++CI C LC+A+CPA+AI +          R+     +D   C YCG 
Sbjct: 152 GIKGGVRPSWQQDQCIYCGLCQAVCPAKAIEV---------HRQEETLSLDSQLCTYCGK 202

Query: 109 CQEACPVDAIVEGPNFEFAT 128
           C ++CP  A      F  + 
Sbjct: 203 CVKSCPTSAWEGERGFLLSF 222



 Score = 40.5 bits (93), Expect = 0.082,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 3/53 (5%)

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           C    +  E       G  R         +CIYCGLCQ  CP  AI      E
Sbjct: 139 CGNNCLKAEENDLGIKGGVRPSWQQ---DQCIYCGLCQAVCPAKAIEVHRQEE 188


>gi|319642705|ref|ZP_07997350.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 3_1_40A]
 gi|317385678|gb|EFV66612.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 3_1_40A]
          Length = 377

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 8/77 (10%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP--VDAIVEG 121
           + C  C  IC   AI++             +   I+   CI CG C+  CP     I   
Sbjct: 1   MGCWACCNICSKNAISMIEDK------FGFLHPQINHNLCIDCGACRTVCPNNTLPIFHI 54

Query: 122 PNFEFATETRQELYYDK 138
               +A  ++ +  Y K
Sbjct: 55  EMSTYAAVSKNDDIYKK 71


>gi|311278870|ref|YP_003941101.1| dihydroorotate dehydrogenase family protein [Enterobacter cloacae
           SCF1]
 gi|308748065|gb|ADO47817.1| dihydroorotate dehydrogenase family protein [Enterobacter cloacae
           SCF1]
          Length = 411

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 23/84 (27%), Gaps = 12/84 (14%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICP---AQAITIESGPRCHDGTRRTVRYDID 99
                     +       ++C+ C  C   C     QA+      R              
Sbjct: 324 VPAEELDRSYIVYPQIHLDKCVGCGRCYISCYDGGHQAMEWNEDTRTPHCN--------- 374

Query: 100 MIKCIYCGLCQEACPVDAIVEGPN 123
             KC+ C LC   CPV  I  G  
Sbjct: 375 TEKCVGCLLCGHVCPVACISLGNI 398


>gi|307596266|ref|YP_003902583.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Vulcanisaeta distributa DSM 14429]
 gi|307551467|gb|ADN51532.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Vulcanisaeta
           distributa DSM 14429]
          Length = 445

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 7/98 (7%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           +  T+        +      + +C  C +C A CP +A  +                 ++
Sbjct: 292 RPRTTGVANELLKIFSVHVDDVKCSFCGVCFAKCPERAFDVGRDGNK-------TVLKLN 344

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
            +KCI CG C   CP  AI      EF      ++ YD
Sbjct: 345 NLKCIGCGYCARLCPEKAITVDRAKEFPMSDSTDVVYD 382



 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 11/55 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           C  C   CPA AI+I +            R  I+   CI CGLC   CP  A+  
Sbjct: 116 CGECVNACPANAISIVNN-----------RVTINESACIECGLCVSRCPTGALAM 159


>gi|300175205|emb|CBK20516.2| unnamed protein product [Blastocystis hominis]
          Length = 1769

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 37/114 (32%), Gaps = 29/114 (25%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTR------------RT 93
            A+       ++CI C  C  +CP   I     T E   +  +G +              
Sbjct: 680 IAIMNPEWQIDKCIQCNQCATVCPHACIRPVLLTEEEAAKAPEGFKTLKATGGGALNNMR 739

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGP------------NFEFATETRQELY 135
            R  +  + C  C LC EAC  DA+V                +     ++ +L 
Sbjct: 740 FRIQVSPLDCTGCQLCVEACGDDALVMKDFEVMKTQEAANWEYAMTVPSKGDLV 793


>gi|300175052|emb|CBK20363.2| unnamed protein product [Blastocystis hominis]
          Length = 1769

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 37/114 (32%), Gaps = 29/114 (25%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTR------------RT 93
            A+       ++CI C  C  +CP   I     T E   +  +G +              
Sbjct: 680 IAIMNPEWQIDKCIQCNQCATVCPHACIRPVLLTEEEAAKAPEGFKTLKATGGGALNNMR 739

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGP------------NFEFATETRQELY 135
            R  +  + C  C LC EAC  DA+V                +     ++ +L 
Sbjct: 740 FRIQVSPLDCTGCQLCVEACGDDALVMKDFEVMKTQEAANWEYAMTVPSKGDLV 793


>gi|300123844|emb|CBK25115.2| Pyruvate:NADP+ Oxidoreductase (PNO) [Blastocystis hominis]
          Length = 1767

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 37/114 (32%), Gaps = 29/114 (25%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTR------------RT 93
            A+       ++CI C  C  +CP   I     T E   +  +G +              
Sbjct: 680 IAIMNPEWQIDKCIQCNQCATVCPHACIRPVLLTEEEAAKAPEGFKTLKATGGGALNNMR 739

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGP------------NFEFATETRQELY 135
            R  +  + C  C LC EAC  DA+V                +     ++ +L 
Sbjct: 740 FRIQVSPLDCTGCQLCVEACGDDALVMKDFEVMKTQEAANWEYAMTVPSKGDLV 793


>gi|257058012|ref|YP_003135900.1| bidirectional hydrogenase complex protein HoxU [Cyanothece sp. PCC
           8802]
 gi|256588178|gb|ACU99064.1| ferredoxin [Cyanothece sp. PCC 8802]
          Length = 238

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 28/89 (31%), Gaps = 12/89 (13%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRR 92
            +P  K   S    G            RCI C  C  +C     A   +   R  +    
Sbjct: 128 QFPDRKIDVSHPQFG--------IDHNRCILCTRCVRVCDEIEGAHVWDVANRGGNSFIV 179

Query: 93  TVRYDID--MIKCIYCGLCQEACPVDAIV 119
           +        +  C  CG C EACP  AI 
Sbjct: 180 SGINQPWGDVDACTSCGKCVEACPTGAIF 208


>gi|154150131|ref|YP_001403749.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Candidatus Methanoregula boonei 6A8]
 gi|153998683|gb|ABS55106.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methanoregula boonei 6A8]
          Length = 694

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 29/80 (36%), Gaps = 9/80 (11%)

Query: 45  PRFRGEHALRRYP--NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           P   GE  L  Y     EE+C  C +C  +CP  A+++                 +   K
Sbjct: 603 PIHMGEVELEPYFAMCIEEKCAGCGMCVNLCPYSALSLVEKD-------GRTVMQVTEAK 655

Query: 103 CIYCGLCQEACPVDAIVEGP 122
           C  CG C   CP  AI    
Sbjct: 656 CKGCGTCGGFCPGGAIWMQH 675



 Score = 34.3 bits (77), Expect = 5.1,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 17/50 (34%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
             C + +       +        +      + Y ID   C+ CGLC  AC
Sbjct: 291 TVCPVVKPNEFEIGMKPRKAIYINHPQVVPLIYTIDFNTCVKCGLCVTAC 340


>gi|27228287|gb|AAN85594.1| trichloroethene reductive dehalogenase [bacterium RC-VC2]
          Length = 554

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 3/60 (5%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID---MIKCIYCGLCQEACPVD 116
            E C  C +C   CP QAI+ E              Y+       KC  C +C+  CP  
Sbjct: 434 REFCKTCGICAEHCPTQAISHEGPRYDSPHWDCVSGYEGWHLDYHKCTNCTICEAVCPFF 493



 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 103 CIYCGLCQEACPVDAI-VEGPNFE 125
           C  CG+C E CP  AI  EGP ++
Sbjct: 437 CKTCGICAEHCPTQAISHEGPRYD 460


>gi|313905838|ref|ZP_07839196.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Eubacterium
           cellulosolvens 6]
 gi|313469352|gb|EFR64696.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Eubacterium
           cellulosolvens 6]
          Length = 1181

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 23/93 (24%), Gaps = 19/93 (20%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQ--------------AITIESGPRCHDGTRRT 93
           RG        N  + CI C  C  +CP                A                
Sbjct: 680 RGIAVNVPVWN-SDNCIQCNRCSYVCPHAVIRPFALTPAEVDAAPEGFKSMDMTGMPEYK 738

Query: 94  VRYDIDMIKCIYCGLCQEACP----VDAIVEGP 122
               I  + C  CG C   CP      A+   P
Sbjct: 739 FSMQISTLDCTGCGSCANVCPGKKGEKALTMVP 771


>gi|312879496|ref|ZP_07739296.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Aminomonas
           paucivorans DSM 12260]
 gi|310782787|gb|EFQ23185.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Aminomonas
           paucivorans DSM 12260]
          Length = 1175

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 23/79 (29%), Gaps = 16/79 (20%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQA----------------ITIESGPRCHDGTRRTVR 95
           A+         CI C  C  +CP  A                    +  +  D       
Sbjct: 675 AIDIPVWDPATCIQCGKCSLVCPHAAIRAKVYDPKLLEGAPATFKSTDAKWKDFPGMKFT 734

Query: 96  YDIDMIKCIYCGLCQEACP 114
             +    CI CGLC + CP
Sbjct: 735 VQVAPEDCIGCGLCVQNCP 753



 Score = 35.1 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 9/19 (47%)

Query: 100 MIKCIYCGLCQEACPVDAI 118
              CI CG C   CP  AI
Sbjct: 683 PATCIQCGKCSLVCPHAAI 701


>gi|301064440|ref|ZP_07204859.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300441450|gb|EFK05796.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 235

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 11/62 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E CI C+ C   C  +A+ +E                I+  +CI CGLC   CP DA+
Sbjct: 142 DTETCIGCETCLERCQMEALRMEDD-----------HAVINRDRCIGCGLCVSTCPSDAL 190

Query: 119 VE 120
             
Sbjct: 191 HM 192


>gi|296132462|ref|YP_003639709.1| formate dehydrogenase, alpha subunit [Thermincola sp. JR]
 gi|296031040|gb|ADG81808.1| formate dehydrogenase, alpha subunit [Thermincola potens JR]
          Length = 894

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLCQE 111
                  +CI C  C  +C   Q   I        GT+    +D+     +C+ CG C  
Sbjct: 138 CIERDMNKCIRCGKCVRVCSEIQGRHIVDFSSRGFGTKIATFFDMPLGQSECVTCGSCVA 197

Query: 112 ACPVDAIVE 120
            CP  A+ E
Sbjct: 198 VCPTGALTE 206



 Score = 38.9 bits (89), Expect = 0.22,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 26/89 (29%), Gaps = 10/89 (11%)

Query: 48  RGEHALRRYPNGEERCIAC---KLC-----EAICPAQAITIESGPRCHDGTRRTVRYDID 99
           R         N  E C+ C     C       +   +  +     R           + D
Sbjct: 83  RKMIIELLLANHPEDCMTCQKFGNCKLADYAYLYGVRKSSFAGEKRSEPVDTSNPCIERD 142

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
           M KCI CG C   C    I      +F++
Sbjct: 143 MNKCIRCGKCVRVC--SEIQGRHIVDFSS 169


>gi|288935201|ref|YP_003439260.1| electron transport complex, RnfABCDGE type, C subunit [Klebsiella
           variicola At-22]
 gi|288889910|gb|ADC58228.1| electron transport complex, RnfABCDGE type, C subunit [Klebsiella
           variicola At-22]
          Length = 719

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 40/112 (35%), Gaps = 13/112 (11%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEKGCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHNLADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            I     F     E +   ++E     +R      R+E+   R +  +   R
Sbjct: 429 NIPLVQYFRQEKAEISAIRQEE-----QRAAEAKARFEARQAR-LEREKAAR 474


>gi|284162170|ref|YP_003400793.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Archaeoglobus profundus DSM 5631]
 gi|284012167|gb|ADB58120.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Archaeoglobus profundus DSM 5631]
          Length = 655

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 12/80 (15%)

Query: 43  TSPRFRGEHAL--RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100
            S   RG   L        EE+C  C +C  +CP QAI I+   R            ID 
Sbjct: 569 LSMIDRGYIELEPTTAYVDEEKCSGCGICIPLCPFQAIEIDERKRAK----------IDE 618

Query: 101 IKCIYCGLCQEACPVDAIVE 120
           + C+ CG+C  +CP  AI  
Sbjct: 619 LLCMGCGVCASSCPSRAIKH 638


>gi|206900598|ref|YP_002250293.1| Fe-hydrogenase beta subunit [Dictyoglomus thermophilum H-6-12]
 gi|206739701|gb|ACI18759.1| Fe-hydrogenase beta subunit [Dictyoglomus thermophilum H-6-12]
          Length = 624

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 29/67 (43%), Gaps = 10/67 (14%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           A ++Y    E C  C LC   CP  AI+ E G            Y ID  KC  CG+C E
Sbjct: 565 AFKKYVINPELCKGCGLCARSCPQSAISGERGKP----------YVIDQEKCAKCGICVE 614

Query: 112 ACPVDAI 118
            C   AI
Sbjct: 615 KCKFKAI 621



 Score = 40.5 bits (93), Expect = 0.076,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 15/39 (38%)

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              G           +Y I+   C  CGLC  +CP  AI
Sbjct: 553 HIEGICPSGMCTAFKKYVINPELCKGCGLCARSCPQSAI 591


>gi|206575962|ref|YP_002238213.1| electron transport complex, RnfABCDGE type, C subunit [Klebsiella
           pneumoniae 342]
 gi|226735447|sp|B5XWP9|RNFC_KLEP3 RecName: Full=Electron transport complex protein rnfC; AltName:
           Full=Nitrogen fixation protein rnfC
 gi|206565020|gb|ACI06796.1| electron transport complex, RnfABCDGE type, C subunit [Klebsiella
           pneumoniae 342]
          Length = 753

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 40/112 (35%), Gaps = 13/112 (11%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEKGCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHNLADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            I     F     E +   ++E     +R      R+E+   R +  +   R
Sbjct: 429 NIPLVQYFRQEKAEISAIRQEE-----QRAAEAKARFEARQAR-LEREKAAR 474


>gi|156937202|ref|YP_001434998.1| ferredoxin-dependent glutamate synthase [Ignicoccus hospitalis
           KIN4/I]
 gi|156566186|gb|ABU81591.1| ferredoxin-dependent glutamate synthase [Ignicoccus hospitalis
           KIN4/I]
          Length = 717

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 26/91 (28%), Gaps = 16/91 (17%)

Query: 34  INYPFEKGSTSPRFRGEHALRRY------PNGEERCIACKLCEAICPAQAITIESGPRCH 87
           +  P           G  A++            + CI C  C  +CP   I ++      
Sbjct: 208 VITPKSLRPVYKASGGVPAMKNLMPKYRVEFKYDICIGCGTCAMVCPENVIKMKGYKPVA 267

Query: 88  DGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                          CI C  C   CP DA+
Sbjct: 268 A----------READCIGCYACVNYCPTDAV 288



 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 4/39 (10%)

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           +        R   +YDI    CI CG C   CP + I  
Sbjct: 226 AMKNLMPKYRVEFKYDI----CIGCGTCAMVCPENVIKM 260


>gi|153852617|ref|ZP_01994054.1| hypothetical protein DORLON_00027 [Dorea longicatena DSM 13814]
 gi|149754259|gb|EDM64190.1| hypothetical protein DORLON_00027 [Dorea longicatena DSM 13814]
          Length = 607

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 11/65 (16%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ++CI CK C       AI + +G              ID   C  CGLC + CPV AI  
Sbjct: 554 DKCIGCKKCIKELGCPAIVLNNG-----------NVCIDSSMCTGCGLCSQVCPVTAITG 602

Query: 121 GPNFE 125
           G + E
Sbjct: 603 GEDHE 607


>gi|189424747|ref|YP_001951924.1| cobyrinic acid ac-diamide synthase [Geobacter lovleyi SZ]
 gi|189421006|gb|ACD95404.1| Cobyrinic acid ac-diamide synthase [Geobacter lovleyi SZ]
          Length = 292

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 11/63 (17%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           ++ C  C +C   C   AI  E            + Y ID + C  CG+C   CPV AI 
Sbjct: 70  QQDCTGCGICMDSCRFDAIRRED-----------ISYRIDPVACEGCGVCYRLCPVKAID 118

Query: 120 EGP 122
              
Sbjct: 119 FPD 121



 Score = 33.9 bits (76), Expect = 7.5,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 12/26 (46%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPN 123
           I    C  CG+C ++C  DAI     
Sbjct: 68  IRQQDCTGCGICMDSCRFDAIRREDI 93


>gi|149734|gb|AAB02352.1| mvhB [Methanothermobacter thermautotrophicus]
          Length = 412

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ CI C +C   CP  A+   SG +     +   ++++D   CI C  C EACP D I
Sbjct: 173 DEDTCIKCGVCAQTCPWNAVY-ISGRKPEKRAKEIKKFELDEDACIGCNTCVEACPGDFI 231



 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 1/65 (1%)

Query: 60  EERCIACKLCEAICPAQAIT-IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              C  C  C   CP  A++ ++          +  R   +   C  CG C EACP D +
Sbjct: 322 FAMCTRCGACTVACPKGALSLVDMDKVVDGEVVKRKRVQYNPALCDQCGDCIEACPYDML 381

Query: 119 VEGPN 123
                
Sbjct: 382 KLTDE 386



 Score = 42.4 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 1/80 (1%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                + + A  +    +  C+ C+ C  ICP   I +E                I +  
Sbjct: 87  PPQILKLDEAKVKKVPLQGFCVMCQKCVDICPVGVIGVEGIKEPAKVELEIEGP-IFIAD 145

Query: 103 CIYCGLCQEACPVDAIVEGP 122
           C+ CG+C   CPVDAI    
Sbjct: 146 CVGCGMCVPECPVDAITLDK 165



 Score = 40.9 bits (94), Expect = 0.060,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 9/60 (15%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C+ C +C   CP  AIT++         +     +ID   CI CG+C + CP +A+   
Sbjct: 145 DCVGCGMCVPECPVDAITLD---------KVGGVIEIDEDTCIKCGVCAQTCPWNAVYIS 195



 Score = 37.8 bits (86), Expect = 0.52,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 23/65 (35%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
             EE+C     C  ICP  AI + +           V  +     C  CG C  ACP  A
Sbjct: 280 WDEEKCDFIGACANICPNDAIRVVTKEGMKVPDNEKVDEEPSFAMCTRCGACTVACPKGA 339

Query: 118 IVEGP 122
           +    
Sbjct: 340 LSLVD 344



 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 24/66 (36%), Gaps = 4/66 (6%)

Query: 52  ALRRYPNGEERCIACK---LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           A+   P     C  C     C  ICP  A+ +E       G     R   +  KC  CG 
Sbjct: 23  AIEVTPEDVIYCDICGGEPKCVDICPTGALKLEDLVVDEAGNT-QGRIVFNPDKCNECGD 81

Query: 109 CQEACP 114
           C E CP
Sbjct: 82  CVEVCP 87



 Score = 35.1 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 17/64 (26%), Gaps = 12/64 (18%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
                 C  C  C   CP   + +        G             CI C  C  ACP  
Sbjct: 360 QYNPALCDQCGDCIEACPYDMLKLTDEKVPLKGF------------CILCDQCIPACPKG 407

Query: 117 AIVE 120
           A+  
Sbjct: 408 ALSL 411



 Score = 34.7 bits (78), Expect = 4.2,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 11/23 (47%)

Query: 101 IKCIYCGLCQEACPVDAIVEGPN 123
             CI CG CQ  CP  AI   P 
Sbjct: 7   EDCIRCGACQGTCPTAAIEVTPE 29



 Score = 33.9 bits (76), Expect = 6.6,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 9/70 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++C  C  C  +CP Q + ++                     C+ C  C + CPV  I
Sbjct: 72  NPDKCNECGDCVEVCPPQILKLDEAKVKKVPL---------QGFCVMCQKCVDICPVGVI 122

Query: 119 VEGPNFEFAT 128
                 E A 
Sbjct: 123 GVEGIKEPAK 132


>gi|27228281|gb|AAN85590.1| trichloroethene reductive dehalogenase [bacterium YK-TCE1]
          Length = 554

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 21/60 (35%), Gaps = 3/60 (5%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID---MIKCIYCGLCQEACPVD 116
            E C  C +C   CP QAI+ E              Y+       KC  C  C+  CP  
Sbjct: 434 REFCKTCGICAEHCPTQAISHEGPRYDSPHWDCVSGYEGWHLDYHKCTNCTNCEAVCPFF 493



 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 103 CIYCGLCQEACPVDAI-VEGPNFE 125
           C  CG+C E CP  AI  EGP ++
Sbjct: 437 CKTCGICAEHCPTQAISHEGPRYD 460


>gi|88859826|ref|ZP_01134465.1| electron transport complex protein RnfB [Pseudoalteromonas tunicata
           D2]
 gi|88817820|gb|EAR27636.1| electron transport complex protein RnfB [Pseudoalteromonas tunicata
           D2]
          Length = 184

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 10/96 (10%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E    +     E   +     E+ CI C  C   CP  AI   +             + +
Sbjct: 90  EAKPLAGGEAKEPIKKVAYIREDECIGCTKCIQACPVDAIIGATRQ----------MHTV 139

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134
            + +C  C LC E CPVD I   P  E +   + +L
Sbjct: 140 LIDECTGCDLCVEPCPVDCIDMLPVQETSQNWKWQL 175


>gi|302340131|ref|YP_003805337.1| Fe-S cluster domain protein [Spirochaeta smaragdinae DSM 11293]
 gi|301637316|gb|ADK82743.1| Fe-S cluster domain protein [Spirochaeta smaragdinae DSM 11293]
          Length = 447

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 12/65 (18%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI-VE 120
           +CI C  C   CP +AI +  G              +D  +C+ CG C   CPVDAI +E
Sbjct: 16  KCIGCTHCMLTCPTEAIRVFGGKAH-----------VDPNRCVDCGNCMSVCPVDAIVIE 64

Query: 121 GPNFE 125
             +F+
Sbjct: 65  QDDFD 69



 Score = 34.7 bits (78), Expect = 4.7,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 11/21 (52%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           I   KCI C  C   CP +AI
Sbjct: 12  IVEAKCIGCTHCMLTCPTEAI 32


>gi|242027232|gb|ACS75683.1| hydrogenase I [Clostridium sp. IBUN 13A]
          Length = 385

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 3/78 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPV 115
              +C+ C  C A C  +  T           R+    +    D   C+ CG C  ACPV
Sbjct: 59  DRSKCVLCGRCVAACKEKTGTGNIEIAGKGPDRKVQAIEGKCFDETNCLLCGQCVAACPV 118

Query: 116 DAIVEGPNFEFATETRQE 133
            A+ E P+ +   E  ++
Sbjct: 119 AALNEKPHIDRVKEALED 136


>gi|164612837|gb|ABY63664.1| [FeFe] hydrogenase [Clostridium butyricum]
          Length = 574

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 3/78 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPV 115
              +C+ C  C A C  +  T           R+    +    D   C+ CG C  ACPV
Sbjct: 143 DRSKCVLCGRCVAACKEKTGTGNIEISGKGPDRKVQAIEGKCFDETNCLLCGQCVAACPV 202

Query: 116 DAIVEGPNFEFATETRQE 133
            A+ E P+ +   E  ++
Sbjct: 203 AALNEKPHIDRVKEALED 220


>gi|149191143|ref|ZP_01869401.1| putative formate dehydrogenase, alphasubunit [Vibrio shilonii AK1]
 gi|148834981|gb|EDL51960.1| putative formate dehydrogenase, alphasubunit [Vibrio shilonii AK1]
          Length = 1371

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 1/61 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIE-SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
              RCI+C  C   C  +++    +               +    C+ CG C + CP  A
Sbjct: 614 DANRCISCGSCVHACQTESVHGILNFSETSHRPSFPNGATMGDSNCVQCGACVQVCPTGA 673

Query: 118 I 118
           +
Sbjct: 674 L 674



 Score = 35.1 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 4/50 (8%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G+  C+ C  C  +CP  A++ +           T    I    C YCG+
Sbjct: 655 GDSNCVQCGACVQVCPTGALSDKRDKSHGRIEMLTPVKTI----CTYCGV 700


>gi|152988215|ref|YP_001347022.1| electron transport complex protein RnfC [Pseudomonas aeruginosa
           PA7]
 gi|150963373|gb|ABR85398.1| electron transport complex protein RnfC [Pseudomonas aeruginosa
           PA7]
          Length = 776

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 2/93 (2%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            CI C  C  +CPA  +  +       G          +  CI CG C   CP   I   
Sbjct: 368 PCIRCGDCAQVCPAS-LLPQQLHFFALGGEHEQLLAHHLFDCIECGACAYICP-SDIPLV 425

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVR 154
             +  +    +E      +   + +R+E    R
Sbjct: 426 QYYRASKAQIREQRQKLRKAEQSRERFEQRQAR 458


>gi|77918234|ref|YP_356049.1| putative iron-sulfur cluster-like protein [Pelobacter carbinolicus
           DSM 2380]
 gi|77544317|gb|ABA87879.1| putative iron-sulfur cluster-like protein [Pelobacter carbinolicus
           DSM 2380]
          Length = 398

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 11/60 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + C  C LC   CP QA+ +           +  R  ID  +CI+C  CQE CP  A+
Sbjct: 314 DPQLCRHCGLCVKHCPPQAMVL-----------KHGRLHIDYRRCIHCFCCQELCPYGAL 362


>gi|332296989|ref|YP_004438911.1| NADH dehydrogenase (quinone) [Treponema brennaborense DSM 12168]
 gi|332180092|gb|AEE15780.1| NADH dehydrogenase (quinone) [Treponema brennaborense DSM 12168]
          Length = 593

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 10/58 (17%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           E+CI C  C   CPA  IT E   R          + I+  KC+ CG C+  C  +AI
Sbjct: 543 EKCIGCGACARQCPANCITGEKKMR----------HTIEQSKCLKCGACETTCKFNAI 590


>gi|307108270|gb|EFN56510.1| hypothetical protein CHLNCDRAFT_34957 [Chlorella variabilis]
          Length = 677

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 25/69 (36%), Gaps = 3/69 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPV 115
             E+CI C  C  +C         G                 +D  KCI CG C   CPV
Sbjct: 185 DLEKCIKCGRCVTMCGQVQQMNVLGMINRSRMAHPGVLIEEALDHSKCIECGQCSSVCPV 244

Query: 116 DAIVEGPNF 124
            AIVE   +
Sbjct: 245 GAIVEHSEW 253


>gi|326791477|ref|YP_004309298.1| PAS/PAC sensor protein [Clostridium lentocellum DSM 5427]
 gi|326542241|gb|ADZ84100.1| putative PAS/PAC sensor protein [Clostridium lentocellum DSM 5427]
          Length = 569

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 11/73 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +      +  C  C  C   CP  AI +++               I   +CI CG C + 
Sbjct: 1   MWIIDFFKSNCKNCYACVRACPVNAIQVQAEQA-----------KIVKERCIGCGKCLKV 49

Query: 113 CPVDAIVEGPNFE 125
           CP +A       E
Sbjct: 50  CPKNAKHVQSELE 62


>gi|282855243|ref|ZP_06264575.1| 4Fe-4S binding domain protein [Propionibacterium acnes J139]
 gi|282581831|gb|EFB87216.1| 4Fe-4S binding domain protein [Propionibacterium acnes J139]
 gi|314924057|gb|EFS87888.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL001PA1]
 gi|314965028|gb|EFT09127.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL082PA2]
 gi|314983104|gb|EFT27196.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL110PA3]
 gi|315090647|gb|EFT62623.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL110PA4]
 gi|315093839|gb|EFT65815.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL060PA1]
 gi|315104057|gb|EFT76033.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL050PA2]
 gi|327326470|gb|EGE68259.1| NADH dehydrogenase subunit [Propionibacterium acnes HL103PA1]
          Length = 102

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 8/85 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV--------RYDIDMIKCIYCGLCQ 110
             + C +C +C   CPA  ITI++                     + ID   C+YCG+C 
Sbjct: 9   DVDACTSCMICARECPAWCITIDAHHEAVPDCDVRRPRTVAVLDEFAIDWGLCMYCGMCI 68

Query: 111 EACPVDAIVEGPNFEFATETRQELY 135
           E+CP D +         + +R +L 
Sbjct: 69  ESCPFDVLSWSDKCVPESSSRTDLV 93


>gi|322421176|ref|YP_004200399.1| molybdopterin oxidoreductase [Geobacter sp. M18]
 gi|320127563|gb|ADW15123.1| molybdopterin oxidoreductase [Geobacter sp. M18]
          Length = 822

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 22/66 (33%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            +   RCI C+ C  +                        D   + C +CG C  ACP  
Sbjct: 140 ESDPNRCILCEKCVKVDHEIVGCDAIEVVNKGEDAIIDTVDGKPLNCEFCGNCVAACPTG 199

Query: 117 AIVEGP 122
           A++  P
Sbjct: 200 ALISKP 205


>gi|256422463|ref|YP_003123116.1| dihydropyrimidine dehydrogenase [Chitinophaga pinensis DSM 2588]
 gi|256037371|gb|ACU60915.1| dihydroorotate dehydrogenase family protein [Chitinophaga pinensis
           DSM 2588]
          Length = 422

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 5/71 (7%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
           +        +E+CI C LC   C               G      Y I   +C+ C LC+
Sbjct: 331 NYHIVANINQEKCIHCGLCYISCEDG---SHQAINLAYGNPYNT-YSIKEEECVGCNLCK 386

Query: 111 EACPV-DAIVE 120
             CPV + I  
Sbjct: 387 LVCPVDNCITM 397


>gi|254519533|ref|ZP_05131589.1| anaerobic sulfite reductase subunit C [Clostridium sp. 7_2_43FAA]
 gi|226913282|gb|EEH98483.1| anaerobic sulfite reductase subunit C [Clostridium sp. 7_2_43FAA]
          Length = 320

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 23/88 (26%), Gaps = 8/88 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +         G   +       ++CI+C  C   C                     R
Sbjct: 145 CPNDCIKARMHDFGIIGMTEPQFDRDKCISCGACVRAC--------KKKSTAALHPENYR 196

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPN 123
              D  KCI CG C   CP  A      
Sbjct: 197 PVRDHSKCIGCGECVINCPTGAWTRSKE 224


>gi|95931022|ref|ZP_01313750.1| Cobyrinic acid a,c-diamide synthase [Desulfuromonas acetoxidans DSM
           684]
 gi|95132918|gb|EAT14589.1| Cobyrinic acid a,c-diamide synthase [Desulfuromonas acetoxidans DSM
           684]
          Length = 304

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 22/81 (27%), Gaps = 12/81 (14%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
                     +       E+ C  C  C+ +C               G   T  Y I   
Sbjct: 47  PQVDHCHEFISGTIAVIDEQGCTQCGECQRLCRFG------------GISATPPYTIQPS 94

Query: 102 KCIYCGLCQEACPVDAIVEGP 122
            C  CG+C   CP   I   P
Sbjct: 95  GCEGCGVCARFCPQQVITMEP 115


>gi|320538845|ref|ZP_08038521.1| putative fused 4Fe-4S ferredoxin-type protein/conserved protein
           [Serratia symbiotica str. Tucson]
 gi|320031005|gb|EFW13008.1| putative fused 4Fe-4S ferredoxin-type protein/conserved protein
           [Serratia symbiotica str. Tucson]
          Length = 617

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           + CI C LC   CPA  +  +       G       + ++  CI CG C   CP
Sbjct: 375 QACIRCGLCVDACPAG-LLPQQLYWFSRGKEHDKARNHNLSDCIECGACAFVCP 427



 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 97  DIDMIKCIYCGLCQEACP 114
            +    CI CGLC +ACP
Sbjct: 371 QVPEQACIRCGLCVDACP 388


>gi|15678222|ref|NP_275337.1| glutamate synthase (NADPH), alpha subunit [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2621238|gb|AAB84700.1| glutamate synthase (NADPH), alpha subunit [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 499

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 33/117 (28%), Gaps = 15/117 (12%)

Query: 31  KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT 90
              +    E    +    G          E  C  C  C   CP     I +G       
Sbjct: 2   PFKVERKEEVCKRNFDRPGCCWYMCDNRDESLCANCYSCYNNCPHDVYEIINGEPVP--- 58

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDR 147
                  +    C+ C +C+E CP +AI          E R+   +    LL    +
Sbjct: 59  -------VRHENCVGCRICEEMCPNNAI----EVNAVPEDRRN-VWSFADLLEIERK 103


>gi|13542226|ref|NP_111914.1| Fe-S oxidoreductase [Thermoplasma volcanium GSS1]
 gi|14325660|dbj|BAB60563.1| hypohtetical protein [Thermoplasma volcanium GSS1]
          Length = 659

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 29/93 (31%), Gaps = 15/93 (16%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM-----------IKCI 104
           Y      C  C  CE  CPA A   +  PR      + +                   C 
Sbjct: 291 YRTAAMACTDCGRCERACPAYASGTDLDPRLVVQNVKKLVNTDSELVPVVLTENASWSCT 350

Query: 105 YCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
            C  C E CPV        + F  ETR+ L  +
Sbjct: 351 TCMACVEECPV----LIRPYSFVVETRRNLVME 379


>gi|219667454|ref|YP_002457889.1| NADH dehydrogenase (quinone) [Desulfitobacterium hafniense DCB-2]
 gi|219537714|gb|ACL19453.1| NADH dehydrogenase (quinone) [Desulfitobacterium hafniense DCB-2]
          Length = 597

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 19/98 (19%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEH--ALRRYPNGEERCIACKLCEAICPAQAITI 80
            L+YF          FE+   + + R      L  Y    E+C  C LC   CPA  I+ 
Sbjct: 514 TLKYF-------REEFEEHIHAKKCRAGVCSELLTYSIDAEKCKKCGLCARNCPANCISG 566

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                      +   Y ID  +CI CG C ++C   A+
Sbjct: 567 N----------KNTPYVIDGERCIRCGSCMDSCKFGAV 594



 Score = 37.0 bits (84), Expect = 0.86,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 17/45 (37%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
            I +           + Y ID  KC  CGLC   CP + I    N
Sbjct: 525 HIHAKKCRAGVCSELLTYSIDAEKCKKCGLCARNCPANCISGNKN 569


>gi|319955922|ref|YP_004167185.1| NADH dehydrogenase subunit g [Nitratifractor salsuginis DSM 16511]
 gi|319418326|gb|ADV45436.1| NADH dehydrogenase subunit G [Nitratifractor salsuginis DSM 16511]
          Length = 761

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 1/85 (1%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
            ++ +   ++R              CI C+ C   C  + I  ++      G + T+   
Sbjct: 129 EQEFAAKDQYRPVQNWGFISYDPSLCIMCEKCVRTC-TEIIGDDALAIETGGYKSTIVAT 187

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
            D+  C  CG C   CPV A+V   
Sbjct: 188 RDLDDCAQCGECMAVCPVGALVSTD 212


>gi|256810428|ref|YP_003127797.1| archaeoflavoprotein, MJ0208 family [Methanocaldococcus fervens
           AG86]
 gi|256793628|gb|ACV24297.1| archaeoflavoprotein, MJ0208 family [Methanocaldococcus fervens
           AG86]
          Length = 247

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 11/69 (15%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            Y   + +C  C  C   CP  AI            +R    +I + KC+ CG C++ CP
Sbjct: 151 PYSVDKSKCKLCLKCIDACPNGAI-----------IKRDGFVEISIHKCLGCGNCKKICP 199

Query: 115 VDAIVEGPN 123
            +AIVEG  
Sbjct: 200 YNAIVEGKE 208


>gi|227498924|ref|ZP_03929063.1| pyruvate ferredoxin oxidoreductase [Acidaminococcus sp. D21]
 gi|226904375|gb|EEH90293.1| pyruvate ferredoxin oxidoreductase [Acidaminococcus sp. D21]
          Length = 1169

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 28/88 (31%), Gaps = 16/88 (18%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIE--------------SGPRCHDGTRRTVRY 96
            A+       E CI C  C  +CP  AI                 +            R 
Sbjct: 677 IAINVPEWKIENCIQCNQCSYVCPHAAIRPVLLNDEEVKAAPAEFTTKPAVGAKDLHFRM 736

Query: 97  DIDMIKCIYCGLCQEACP--VDAIVEGP 122
            +  + C  CG C +ACP    A+V  P
Sbjct: 737 MVSPMDCQGCGNCVDACPAKEKALVMMP 764


>gi|206896550|ref|YP_002247823.1| putative pyruvate formate-lyase 3-activating enzyme (PFL-activating
           enzyme 3) (Formate-C-acetyltransferase-activatingenzyme
           3) [Coprothermobacter proteolyticus DSM 5265]
 gi|206739167|gb|ACI18245.1| putative pyruvate formate-lyase 3-activating enzyme (PFL-activating
           enzyme 3) (Formate-C-acetyltransferase-activatingenzyme
           3) [Coprothermobacter proteolyticus DSM 5265]
          Length = 306

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 13/81 (16%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RC+ C  C+ +CP  A+ +  G              ID  +C  CG+C   CP  A    
Sbjct: 57  RCMRCGTCQEVCPQDALELTQGGVV-----------IDRTQCTRCGVCAHYCPTTAWQMV 105

Query: 122 PNFEFATETRQELYYDKERLL 142
                  E  QEL  +K+RL 
Sbjct: 106 GFTLSVKELMQEL--EKDRLY 124



 Score = 37.4 bits (85), Expect = 0.62,   Method: Composition-based stats.
 Identities = 11/46 (23%), Positives = 16/46 (34%)

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
                    +  +G            +C+ CG CQE CP DA+   
Sbjct: 31  GCPLSCWWCQNPEGISPIPELMHFEFRCMRCGTCQEVCPQDALELT 76


>gi|124486457|ref|YP_001031073.1| hypothetical protein Mlab_1645 [Methanocorpusculum labreanum Z]
 gi|124363998|gb|ABN07806.1| thiamine pyrophosphate enzyme domain protein TPP-binding protein
           [Methanocorpusculum labreanum Z]
          Length = 594

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 26/102 (25%), Gaps = 12/102 (11%)

Query: 20  FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79
               LR   +         ++       R      RY    E C  C  C          
Sbjct: 501 LLATLREAKEKPGVKVIIAKQPCVIMNKRLGIKRNRYVVDAEACTKCGAC---LRYGCPA 557

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           IE+                    C  CG+C + CP  AI  G
Sbjct: 558 IETDETGAAKI---------TALCTGCGVCADICPTGAIHRG 590


>gi|157370844|ref|YP_001478833.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing
           protein [Serratia proteamaculans 568]
 gi|157322608|gb|ABV41705.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Serratia proteamaculans 568]
          Length = 1177

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 37/142 (26%), Gaps = 33/142 (23%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A        + C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSAFPPDGTWPVGTTQWEKRNIAEAIPIWQPDLCTQCNHCVAAC 699

Query: 74  PAQAIT--------IESGP--------RCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI         +E+ P        +  D   +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVQPEAMENAPASLQSLDVKARDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFE-FATET 130
                  AI   P  E  A E 
Sbjct: 760 RQDPDIKAINMAPRLEHLAVEK 781


>gi|186476292|ref|YP_001857762.1| dihydropyrimidine dehydrogenase [Burkholderia phymatum STM815]
 gi|184192751|gb|ACC70716.1| dihydroorotate dehydrogenase family protein [Burkholderia phymatum
           STM815]
          Length = 436

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 6/63 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117
            + +CI C LC   C     + ++  R  DG R    +++   +C+ C LC   CPV   
Sbjct: 341 DQHKCIQCGLCHIACED--TSHQAITREKDGKR---HFEVIDAQCVGCNLCMHVCPVEQC 395

Query: 118 IVE 120
           I  
Sbjct: 396 ITM 398


>gi|110803389|ref|YP_698744.1| anaerobic sulfite reductase, subunit C [Clostridium perfringens
           SM101]
 gi|110683890|gb|ABG87260.1| anaerobic sulfite reductase, subunit C [Clostridium perfringens
           SM101]
          Length = 326

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 25/88 (28%), Gaps = 8/88 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +         G   +        RC++C  C   C  +A    S             
Sbjct: 147 CPNDCIKARMHDFGIIGMTEPQYERNRCVSCGACVRACKKKATGALSFENFKVVR----- 201

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPN 123
              D  KCI CG C   CP +A      
Sbjct: 202 ---DGSKCIGCGECVMNCPTNAWTRSKE 226


>gi|84503342|ref|ZP_01001411.1| dihydropyrimidine dehydrogenase [Oceanicola batsensis HTCC2597]
 gi|84388252|gb|EAQ01203.1| dihydropyrimidine dehydrogenase [Oceanicola batsensis HTCC2597]
          Length = 434

 Score = 47.8 bits (112), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 8/76 (10%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI C  C A C       E       G      +++   +C+ 
Sbjct: 330 QYLNLNYVTKARIDQDLCIKCGRCYAAC-------EDTSHQAIGMNEGRVFEVIDEECVA 382

Query: 106 CGLCQEACPV-DAIVE 120
           C LC   CPV D I  
Sbjct: 383 CNLCVNVCPVEDCITM 398


>gi|281178701|dbj|BAI55031.1| putative transport protein [Escherichia coli SE15]
          Length = 806

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 40/112 (35%), Gaps = 13/112 (11%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            I     F     E A   ++E     +R      R+E+   R +  +   R
Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEE-----KRAAEAKARFEARQAR-LEREKTAR 474


>gi|269123084|ref|YP_003305661.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Streptobacillus
           moniliformis DSM 12112]
 gi|268314410|gb|ACZ00784.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Streptobacillus
           moniliformis DSM 12112]
          Length = 1189

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 30/106 (28%), Gaps = 19/106 (17%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT------- 90
           FE G  +   R            E CI C  C  +CP  AI                   
Sbjct: 674 FENGEANFEKRAIAKYIPEWR-PEHCIQCNQCSYVCPHAAIRPFLIDEKELENIPNSMDL 732

Query: 91  ---------RRTVRYDIDMIKCIYCGLCQEACP--VDAIVEGPNFE 125
                    R   R  +  + C  C  C E CP    A+V  P  E
Sbjct: 733 LNPLGKGLERLRYRIQVSPLDCTGCTACAEVCPARTKALVMRPIEE 778


>gi|223558088|gb|ACM91092.1| proline dehydrogenase alpha subunit [uncultured bacterium Rlip1]
          Length = 1089

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 28/81 (34%), Gaps = 10/81 (12%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           EK +     R +       +      AC  C   CP  AI+  S               I
Sbjct: 442 EKPNLPTPERMQLKAFVQADCLYGF-ACNPCSFSCPQGAISKPST---------NSVPTI 491

Query: 99  DMIKCIYCGLCQEACPVDAIV 119
           D  KCI C LC  +CP  AI 
Sbjct: 492 DYDKCIGCMLCVSSCPGLAIF 512


>gi|254166732|ref|ZP_04873586.1| CobQ/CobB/MinD/ParA nucleotide binding domain, putative
           [Aciduliprofundum boonei T469]
 gi|289596500|ref|YP_003483196.1| Cobyrinic acid ac-diamide synthase [Aciduliprofundum boonei T469]
 gi|197624342|gb|EDY36903.1| CobQ/CobB/MinD/ParA nucleotide binding domain, putative
           [Aciduliprofundum boonei T469]
 gi|289534287|gb|ADD08634.1| Cobyrinic acid ac-diamide synthase [Aciduliprofundum boonei T469]
          Length = 292

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 12/63 (19%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DAIV 119
           ++CI C +C+ IC  +AI IE+G            + I    C  CG C+  CPV DAI+
Sbjct: 67  DKCINCGVCDNICIYEAIYIENGQ-----------HKIKEYLCEGCGACKAVCPVEDAII 115

Query: 120 EGP 122
              
Sbjct: 116 IDD 118


>gi|160915963|ref|ZP_02078171.1| hypothetical protein EUBDOL_01988 [Eubacterium dolichum DSM 3991]
 gi|158432439|gb|EDP10728.1| hypothetical protein EUBDOL_01988 [Eubacterium dolichum DSM 3991]
          Length = 482

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 24/68 (35%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQ 110
               ++C  C  C+  CP  AI     P                   ID  KCI CG CQ
Sbjct: 129 YIDYDKCKECGACKNACPFNAIVETPRPCKLSCPVDAITIGENKLAYIDEEKCINCGACQ 188

Query: 111 EACPVDAI 118
             CP  AI
Sbjct: 189 AKCPFGAI 196



 Score = 41.6 bits (96), Expect = 0.033,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 5/65 (7%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDG-----TRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           C  C + +           +                 R  ID  KC  CG C+ ACP +A
Sbjct: 90  CDGCSINKIQVTDNCRKCMAKACVASCKFDAIHIGNERAYIDYDKCKECGACKNACPFNA 149

Query: 118 IVEGP 122
           IVE P
Sbjct: 150 IVETP 154


>gi|170725299|ref|YP_001759325.1| formate dehydrogenase subunit alpha [Shewanella woodyi ATCC 51908]
 gi|169810646|gb|ACA85230.1| formate dehydrogenase, alpha subunit [Shewanella woodyi ATCC 51908]
          Length = 1426

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 24/74 (32%), Gaps = 14/74 (18%)

Query: 59  GEERCIACKLCEAIC--------------PAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
              RCI+C  C  IC                QA+  +         R      +    C+
Sbjct: 647 DANRCISCGACVDICQQQSGHKAISFTEEHYQALPTQEKNSVRRAPRVGFAATMLDSNCV 706

Query: 105 YCGLCQEACPVDAI 118
            CG C + CP  A+
Sbjct: 707 QCGNCIQVCPTGAL 720


>gi|53803292|ref|YP_114983.1| formate dehydrogenase subunit alpha [Methylococcus capsulatus str.
           Bath]
 gi|53757053|gb|AAU91344.1| formate dehydrogenase, alpha subunit [Methylococcus capsulatus str.
           Bath]
          Length = 925

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 8/95 (8%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD--- 97
               P  R   A+       + CI C  C   C  +    +     + G+   + +D   
Sbjct: 127 REAPPPDRSNPAI---AVQLDACIQCTRCVRACR-ETQVNDVIGYAYRGSHARIVFDQGD 182

Query: 98  -IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
            + +  C+ CG C + CP  A+  G         R
Sbjct: 183 PMGLSSCVSCGECVQVCPTGALAPGNGAALLEADR 217


>gi|73668425|ref|YP_304440.1| hypothetical protein Mbar_A0886 [Methanosarcina barkeri str.
           Fusaro]
 gi|72395587|gb|AAZ69860.1| hypothetical protein Mbar_A0886 [Methanosarcina barkeri str.
           Fusaro]
          Length = 303

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 32/93 (34%), Gaps = 20/93 (21%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E+C  C LC  +C    I +E+     D TR           CI CG C   CP  AI
Sbjct: 17  DYEKCKTCGLCVKVCKGAPIYLENDKVRIDQTRYFG--------CIGCGHCVAVCPTGAI 68

Query: 119 --------VEGPNFEFATETRQELYYDKERLLN 143
                        +  A E+R       E L+ 
Sbjct: 69  AVEGRDISQTSSIYLPAEESRA----GYEELMA 97


>gi|15922936|ref|NP_378605.1| hypothetical protein ST2600 [Sulfolobus tokodaii str. 7]
 gi|15623727|dbj|BAB67714.1| 331aa long conserved hypothetical protein [Sulfolobus tokodaii str.
           7]
          Length = 331

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 15/103 (14%)

Query: 59  GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
             +RC+ C +CE  C  A+ I ++   R     R           C  CG C+  CP   
Sbjct: 8   DADRCVGCFMCEKACALAKCIEVDEVDRIAKVVRPW--------DCTGCGACERVCPYSC 59

Query: 118 IV-EGPNFEFATE-----TRQELYYDKERLLNNGDRWESEIVR 154
           I+      E +       +R   Y +K  ++ NG+    E+ +
Sbjct: 60  IIVISDPTEVSKRAKITVSRVTRYMNKPVIMCNGNERIYEVAK 102


>gi|311694181|gb|ADP97054.1| electron transport complex, RnfABCDGE type, B subunit [marine
           bacterium HP15]
          Length = 140

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 27/82 (32%), Gaps = 10/82 (12%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E          E   R     E+ CI C  C   CP  AI   +             + +
Sbjct: 40  EPEPLDAEHGVEQVKRVAVIREDECIGCTKCIQACPVDAILGAAK----------HMHTV 89

Query: 99  DMIKCIYCGLCQEACPVDAIVE 120
              +C  C LC + CPVD I  
Sbjct: 90  IESECTGCDLCVDPCPVDCIDM 111


>gi|310767587|gb|ADP12537.1| Electron transport complex protein rnfC [Erwinia sp. Ejp617]
          Length = 785

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 47/133 (35%), Gaps = 8/133 (6%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
           T++ P  K +          + +    E+ CI C  C   CPA A+  +       G   
Sbjct: 348 TLDVPVVKITNCILAPAASEMGQNA-AEQNCIRCSACADACPA-ALLPQQLYWFSRGGDH 405

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF--EFATETRQELYYDKERLLNNGDRWES 150
                 ++  CI CG C   CP   I     +  E A     +L  ++  L     R+E+
Sbjct: 406 EKARAHNIADCIECGACAYVCP-SNIPLVQYYRQEKAEIQAIDLEAERAALAKT--RFEA 462

Query: 151 EIVRNIVTDSPYR 163
              + +  +   R
Sbjct: 463 R-QQRLEREKAAR 474


>gi|291546305|emb|CBL19413.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Ruminococcus sp. SR1/5]
          Length = 623

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 10/68 (14%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           ALR++    E CI C  C   CP  AI+           +    + I+   CI CG C++
Sbjct: 563 ALRQFHINPEFCIGCGKCAKNCPTGAIS----------GKIKHPHVINNDVCIKCGSCKD 612

Query: 112 ACPVDAIV 119
            C  DAI 
Sbjct: 613 NCNFDAIY 620



 Score = 41.2 bits (95), Expect = 0.045,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 15/40 (37%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            I              ++ I+   CI CG C + CP  AI
Sbjct: 550 HIVDKKCRAKVCTALRQFHINPEFCIGCGKCAKNCPTGAI 589


>gi|283478477|emb|CAY74393.1| Electron transport complex protein rnfC [Erwinia pyrifoliae DSM
           12163]
          Length = 659

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 47/133 (35%), Gaps = 8/133 (6%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
           T++ P  K +          + +    E+ CI C  C   CPA A+  +       G   
Sbjct: 348 TLDVPVVKITNCILAPAASEMGQNA-AEQNCIRCSACADACPA-ALLPQQLYWFSRGGDH 405

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF--EFATETRQELYYDKERLLNNGDRWES 150
                 ++  CI CG C   CP   I     +  E A     +L  ++  L     R+E+
Sbjct: 406 EKARAHNIADCIECGACAYVCP-SNIPLVQYYRQEKAEIQAIDLEAERAALAKT--RFEA 462

Query: 151 EIVRNIVTDSPYR 163
              + +  +   R
Sbjct: 463 R-QQRLEREKAAR 474


>gi|260597797|ref|YP_003210368.1| electron transport complex protein RnfC [Cronobacter turicensis
           z3032]
 gi|260216974|emb|CBA30618.1| Electron transport complex protein rnfC [Cronobacter turicensis
           z3032]
          Length = 849

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP
Sbjct: 371 PQEEQHCIRCSACADACPAD-LLPQQLYWFSVGQQHDKATAHNLADCIECGACAYVCP 427


>gi|253997322|ref|YP_003049386.1| RnfABCDGE type electron transport complex subunit C [Methylotenera
           mobilis JLW8]
 gi|253984001|gb|ACT48859.1| electron transport complex, RnfABCDGE type, C subunit
           [Methylotenera mobilis JLW8]
          Length = 637

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 24/76 (31%), Gaps = 2/76 (2%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L   P   + CI C  C   CP      E             R D  +  CI CG C   
Sbjct: 377 LFAPPPPAQPCIRCTRCADACPVNLQPQELYWFAKSDNFEKAR-DYKLFDCIECGCCTYV 435

Query: 113 CPVDAIVEGPNFEFAT 128
           CP   I     + +A 
Sbjct: 436 CP-SNIPLVQYYRYAK 450


>gi|259908517|ref|YP_002648873.1| Electron transport complex protein [Erwinia pyrifoliae Ep1/96]
 gi|224964139|emb|CAX55646.1| Electron transport complex protein [Erwinia pyrifoliae Ep1/96]
          Length = 595

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 47/133 (35%), Gaps = 8/133 (6%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
           T++ P  K +          + +    E+ CI C  C   CPA A+  +       G   
Sbjct: 348 TLDVPVVKITNCILAPAASEMGQNA-AEQNCIRCSACADACPA-ALLPQQLYWFSRGGDH 405

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF--EFATETRQELYYDKERLLNNGDRWES 150
                 ++  CI CG C   CP   I     +  E A     +L  ++  L     R+E+
Sbjct: 406 EKARAHNIADCIECGACAYVCP-SNIPLVQYYRQEKAEIQAIDLEAERAALAKT--RFEA 462

Query: 151 EIVRNIVTDSPYR 163
              + +  +   R
Sbjct: 463 R-QQRLEREKAAR 474


>gi|167844880|ref|ZP_02470388.1| ferredoxin [Burkholderia pseudomallei B7210]
          Length = 159

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 26/81 (32%), Gaps = 10/81 (12%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
             +     E A       E+ CI C LC   CP  AI                 + I   
Sbjct: 66  PLNQAHGVERARPVAFIDEQLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVAE 115

Query: 102 KCIYCGLCQEACPVDAIVEGP 122
            C  C LC   CPVD I   P
Sbjct: 116 LCTGCDLCVPPCPVDCIAMIP 136


>gi|156934161|ref|YP_001438077.1| electron transport complex protein RnfC [Cronobacter sakazakii ATCC
           BAA-894]
 gi|166225091|sp|A7MMK9|RNFC_ENTS8 RecName: Full=Electron transport complex protein rnfC
 gi|156532415|gb|ABU77241.1| hypothetical protein ESA_01988 [Cronobacter sakazakii ATCC BAA-894]
          Length = 776

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP
Sbjct: 371 PQEEQHCIRCSACADACPAD-LLPQQLYWFSVGQQHDKATAHNLADCIECGACAYVCP 427


>gi|139439361|ref|ZP_01772802.1| Hypothetical protein COLAER_01821 [Collinsella aerofaciens ATCC
           25986]
 gi|133775140|gb|EBA38960.1| Hypothetical protein COLAER_01821 [Collinsella aerofaciens ATCC
           25986]
          Length = 401

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 61  ERCIACKLCEAICPAQAITIE---SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           E C+ C  CE IC   AI+ +           TR      ID  +C+ CG C  AC  D 
Sbjct: 201 EHCVGCHACEKICAHNAISFDGTRERELASGATRTVHVAAIDHDRCVGCGRCIAACNQDC 260

Query: 118 IVEGPN 123
           I  G +
Sbjct: 261 IKPGYD 266


>gi|313897910|ref|ZP_07831451.1| 4Fe-4S binding domain protein [Clostridium sp. HGF2]
 gi|312957445|gb|EFR39072.1| 4Fe-4S binding domain protein [Clostridium sp. HGF2]
          Length = 482

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 6/70 (8%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY------DIDMIKCIYCGL 108
                 ++C  C  C+  CP  AI     P         +R        ID  KCI CG 
Sbjct: 127 HAFIDYDKCKECGACKNACPFNAIVETQRPCMKSCPVDAIRMGEDGLAKIDEAKCINCGA 186

Query: 109 CQEACPVDAI 118
           CQ  CP  AI
Sbjct: 187 CQVKCPFGAI 196



 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 24/86 (27%), Gaps = 5/86 (5%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG-----TRRTVR 95
           G        +         E  C  C + +           +                  
Sbjct: 68  GKPPVPVENDKKRHIVRVIEAACDGCSIHKIQVTDNCRKCMAKACLSACKFDAIHMGEDH 127

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEG 121
             ID  KC  CG C+ ACP +AIVE 
Sbjct: 128 AFIDYDKCKECGACKNACPFNAIVET 153


>gi|311694465|gb|ADP97338.1| formate dehydrogenase, alpha subunit [marine bacterium HP15]
          Length = 963

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 3/64 (4%)

Query: 59  GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115
             + CI C LCE  C   Q   +         ++    +D  M    C+ CG C +ACP 
Sbjct: 178 NLDACITCGLCERACREVQGNDVIGLAHRGAASKVIFDFDDPMGDSTCVACGECVQACPT 237

Query: 116 DAIV 119
            A++
Sbjct: 238 GALM 241


>gi|291279991|ref|YP_003496826.1| molybdopterin oxidoreductase molybdopterin-binding subunit
           [Deferribacter desulfuricans SSM1]
 gi|290754693|dbj|BAI81070.1| molybdopterin oxidoreductase, molybdopterin-binding subunit
           [Deferribacter desulfuricans SSM1]
          Length = 745

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 31/85 (36%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
            E   ++   + +       +    C+ C+ C  +C   A                   +
Sbjct: 126 EESVKSTKPNKPKFDWDMIIHDANLCVLCERCVKVCHEIAGCSALKIEERGFNNLITTVN 185

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
              + C +CGLC + CPV A+++ P
Sbjct: 186 ESGLDCDFCGLCVDFCPVGALLDKP 210


>gi|260434049|ref|ZP_05788020.1| dihydroorotate dehydrogenase family protein [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260417877|gb|EEX11136.1| dihydroorotate dehydrogenase family protein [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 434

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 8/78 (10%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    +++CI C  C A C       E              +++   +C+ 
Sbjct: 330 QYLNLNYVAKAKIDQDQCIKCGRCYAAC-------EDTSHQAISMSPDRVFEVIDEECVA 382

Query: 106 CGLCQEACPVD-AIVEGP 122
           C LC + CPV+  I   P
Sbjct: 383 CNLCVDVCPVEGCISMVP 400


>gi|110799819|ref|YP_695522.1| [Fe] hydrogenase [Clostridium perfringens ATCC 13124]
 gi|110674466|gb|ABG83453.1| [Fe] hydrogenase [Clostridium perfringens ATCC 13124]
          Length = 696

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 13/88 (14%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              EE+CI C  C+ IC                   ++    D   CI CG C   CP  
Sbjct: 21  CRDEEKCIKCGSCKNICTD---------YIGVNGHYSLEKTNDTAVCINCGQCANVCPTS 71

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNN 144
           +I E  ++    +  Q+   DK++++  
Sbjct: 72  SITEVFDY----KKVQDAISDKDKIVIV 95


>gi|148257591|ref|YP_001242176.1| putative formate dehydrogenase subunit alpha [Bradyrhizobium sp.
           BTAi1]
 gi|146409764|gb|ABQ38270.1| NAD-dependent formate dehydrogenase iron-sulfur protein /
           NAD-dependent formate dehydrogenase catalytic subunit
           [Bradyrhizobium sp. BTAi1]
          Length = 909

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 24/82 (29%), Gaps = 5/82 (6%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD--- 97
           G      R            + CI C LC   C               G    + +D   
Sbjct: 126 GHRPTIERVTQQHPAITVDLDACIRCGLCRTACQ-DVQVNGVIGVAGRGAEACIVFDANV 184

Query: 98  -IDMIKCIYCGLCQEACPVDAI 118
            +    C+ CG C + CP  A+
Sbjct: 185 PLTDSSCVACGECVQVCPTGAL 206


>gi|330820854|ref|YP_004349716.1| dihydroorotate dehydrogenase family protein [Burkholderia gladioli
           BSR3]
 gi|327372849|gb|AEA64204.1| dihydroorotate dehydrogenase family protein [Burkholderia gladioli
           BSR3]
          Length = 439

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 6/63 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117
            ++RCI C LC   C     + ++  R  DG R    +++   +C+ C LC   CPV   
Sbjct: 341 DQDRCIQCGLCHIACED--TSHQAITREKDGQR---HFEVIDAECVGCNLCMHVCPVEQC 395

Query: 118 IVE 120
           I  
Sbjct: 396 ITM 398


>gi|315930988|gb|EFV09963.1| pyruvate synthase [Campylobacter jejuni subsp. jejuni 327]
          Length = 797

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 29/96 (30%), Gaps = 19/96 (19%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA------------------QAIT 79
           FE G+T    RG   +         CI C  C ++CP                       
Sbjct: 668 FEHGTTEYEKRGVGVMVPRWIE-ANCIQCNQCASVCPHAVIRPFLINDEEMANAPRGVKD 726

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
                +   G + + +  +  + C  C LC   CP 
Sbjct: 727 HALEAKGTKGEKLSFKIQVSPLDCTGCELCVHECPT 762


>gi|296159154|ref|ZP_06841981.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           sp. Ch1-1]
 gi|295890715|gb|EFG70506.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           sp. Ch1-1]
          Length = 279

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 23/64 (35%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ CI C LC   CP  AI                 + +    C  C LC   CPVD I
Sbjct: 85  DEQVCIGCTLCMQACPVDAIVGAPKQ----------MHTVIAELCTGCDLCVPPCPVDCI 134

Query: 119 VEGP 122
              P
Sbjct: 135 ALPP 138



 Score = 37.0 bits (84), Expect = 0.94,   Method: Composition-based stats.
 Identities = 14/21 (66%), Positives = 15/21 (71%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C LC +ACPVDAI
Sbjct: 84  IDEQVCIGCTLCMQACPVDAI 104


>gi|259415268|ref|ZP_05739190.1| formate dehydrogenase, alpha subunit [Silicibacter sp. TrichCH4B]
 gi|259349178|gb|EEW60932.1| formate dehydrogenase, alpha subunit [Silicibacter sp. TrichCH4B]
          Length = 924

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID----MIKCIYCGLCQEACP 114
             + CI+C LC   C  +    +       G      +DI        C+ CG C +ACP
Sbjct: 147 NLDACISCGLCVRACR-EVQVNDVIGMAGRGHNAYPTFDIADPMGASSCVACGECVQACP 205

Query: 115 VDAIV 119
             A++
Sbjct: 206 TGALM 210


>gi|269122189|ref|YP_003310366.1| hydrogenase, Fe-only [Sebaldella termitidis ATCC 33386]
 gi|268616067|gb|ACZ10435.1| hydrogenase, Fe-only [Sebaldella termitidis ATCC 33386]
          Length = 587

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 59  GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115
             ++CI C+ CE +C   Q + + S       +      +I++    C YCG C   CP 
Sbjct: 150 DMDKCIMCRRCETMCNEVQTVGVLSAINRGFESVIATAMEINLSDSVCTYCGQCAAVCPT 209

Query: 116 DAIVEGP 122
            A+VE  
Sbjct: 210 GALVEND 216


>gi|258513452|ref|YP_003189674.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257777157|gb|ACV61051.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 1207

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 44/122 (36%), Gaps = 22/122 (18%)

Query: 28  FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA------------ 75
           FK +    +P    +T+   RG  A R      E+CI C  C  ICP             
Sbjct: 657 FKGREDGTFPL--STTAYEKRGIAA-RIPQWQPEKCIQCNQCSFICPHAVVRPFLLNEEE 713

Query: 76  --QAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPVDA---IVEGPNFEFAT 128
             +A +     +        ++Y   I  + C  CG C + CP      I+  P  E A 
Sbjct: 714 VKKAPSSFITKKATGKGLEGLQYRIQITPLDCTGCGNCADVCPAPGKALIMNDPEEEIAA 773

Query: 129 ET 130
           ++
Sbjct: 774 QS 775


>gi|226326078|ref|ZP_03801596.1| hypothetical protein COPCOM_03896 [Coprococcus comes ATCC 27758]
 gi|225205620|gb|EEG87974.1| hypothetical protein COPCOM_03896 [Coprococcus comes ATCC 27758]
          Length = 295

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 37/122 (30%), Gaps = 30/122 (24%)

Query: 18  GAFFLCLRYFFKAKTTINY-----------PFEKGSTS----PRFRGEHALRRYPNGEER 62
                 L + F  K TI             PF K             + +L +     E+
Sbjct: 180 SGIRAALGHLFTFKFTILVFVIILSILFYRPFCKWICPLGAIYSLFNKISLLKIKVDPEK 239

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+ C+ C   C      +++                    CI CG C +ACP +AI    
Sbjct: 240 CVNCQKCSHACKMDVNVVDTPDHPE---------------CIRCGACMKACPTNAICYHY 284

Query: 123 NF 124
            F
Sbjct: 285 GF 286


>gi|90579150|ref|ZP_01234960.1| electron transport complex protein RnfC [Vibrio angustum S14]
 gi|90439983|gb|EAS65164.1| electron transport complex protein RnfC [Vibrio angustum S14]
          Length = 858

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 37/104 (35%), Gaps = 9/104 (8%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C  C  +CP+  +  +               + ++  CI CG C   CP   I    
Sbjct: 379 CIRCSACADVCPSS-LLPQQLQWYAKDQNYDKCEEYNLKDCIECGACAYVCP-SEIPLVQ 436

Query: 123 NFEFAT---ETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            +  A      R +   + ER      R+E++  R +  D   R
Sbjct: 437 YYRQAKAEIWARSQDEMNAERARQ---RFEAKQAR-MERDKAER 476


>gi|28210729|ref|NP_781673.1| ferredoxin [Clostridium tetani E88]
 gi|28203167|gb|AAO35610.1| rnfB/polyferredoxin [Clostridium tetani E88]
          Length = 290

 Score = 47.8 bits (112), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 31/89 (34%), Gaps = 11/89 (12%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
                  P  K         +  +    +    CI+C LC   CP +AI +         
Sbjct: 185 KAVIELTPMSKKVRIACNSHDKGISVKNSCAVGCISCGLCARNCPVEAIEMVDNLPV--- 241

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                   I+  KC+ CG+C + CP  AI
Sbjct: 242 --------INYDKCVQCGICVKKCPTKAI 262



 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 23/64 (35%), Gaps = 11/64 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C+    C  +C   AITIE G              ID  KC  CG C + CP   I
Sbjct: 140 CSYGCMGLGSCTQVCLFDAITIEDGIAV-----------IDEEKCTGCGACVDICPKAVI 188

Query: 119 VEGP 122
              P
Sbjct: 189 ELTP 192



 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 5/78 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEAC 113
            EE+C  C  C  ICP   I +    +          +     +   + CI CGLC   C
Sbjct: 169 DEEKCTGCGACVDICPKAVIELTPMSKKVRIACNSHDKGISVKNSCAVGCISCGLCARNC 228

Query: 114 PVDAIVEGPNFEFATETR 131
           PV+AI    N       +
Sbjct: 229 PVEAIEMVDNLPVINYDK 246


>gi|282163197|ref|YP_003355582.1| hypothetical protein MCP_0527 [Methanocella paludicola SANAE]
 gi|282155511|dbj|BAI60599.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 294

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 26/84 (30%), Gaps = 17/84 (20%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P  K            +      E  C+AC  CE  C   A+++                
Sbjct: 48  PEVKEKKPYSGHKFPVV-----DESACVACGACETYCRFNAVSMRE------------HA 90

Query: 97  DIDMIKCIYCGLCQEACPVDAIVE 120
            ID   C  CG+C   CP  AI  
Sbjct: 91  AIDPTACEACGVCVAVCPAGAISL 114


>gi|256827391|ref|YP_003151350.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric
           [Cryptobacterium curtum DSM 15641]
 gi|256583534|gb|ACU94668.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric
           [Cryptobacterium curtum DSM 15641]
          Length = 1183

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 32/98 (32%), Gaps = 21/98 (21%)

Query: 57  PNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRYD--IDM 100
               + CI C  C  +CP                A T   G          + Y   +  
Sbjct: 691 RWDADTCIQCNNCSFVCPHATIRPFALTEAELTGAPTHTKGIPAKGKKAAGLTYVLAVSP 750

Query: 101 IKCIYCGLCQEACPVDAIVEGP-NFEFATETRQELYYD 137
           + C+ C +C   CP DA+   P   E A    ++  +D
Sbjct: 751 LDCMGCEVCVTQCPTDALSMVPVEEELA----EQAVFD 784


>gi|222099632|ref|YP_002534200.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermotoga
           neapolitana DSM 4359]
 gi|221572022|gb|ACM22834.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermotoga
           neapolitana DSM 4359]
          Length = 366

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 14/70 (20%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E+C+AC  C   CP  AIT+    R            ID  KCI CG C   C   A   
Sbjct: 202 EKCVACGTCAKFCPVGAITVTKVAR------------IDYDKCIGCGQCIAMCSYGA--M 247

Query: 121 GPNFEFATET 130
            P ++ +T++
Sbjct: 248 SPKWDSSTDS 257



 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 14/36 (38%)

Query: 87  HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                   +  +   KC+ CG C + CPV AI    
Sbjct: 188 KMEQHSDSKPYVVEEKCVACGTCAKFCPVGAITVTK 223


>gi|156938044|ref|YP_001435840.1| pyruvate ferredoxin oxidoreductase, delta subunit [Ignicoccus
           hospitalis KIN4/I]
 gi|156567028|gb|ABU82433.1| pyruvate ferredoxin oxidoreductase, delta subunit [Ignicoccus
           hospitalis KIN4/I]
          Length = 102

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 4/63 (6%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E+C  C+LC   CP  AI      +   G     RY++D + C  CG+C   CPV+AI  
Sbjct: 42  EKCTRCRLCWIYCPDGAIIEVIDEKAKMG----KRYEVDYMHCKGCGICYAECPVNAIEW 97

Query: 121 GPN 123
            P 
Sbjct: 98  VPE 100


>gi|156101541|ref|XP_001616464.1| RNase L inhibitor [Plasmodium vivax SaI-1]
 gi|148805338|gb|EDL46737.1| RNase L inhibitor, putative [Plasmodium vivax]
          Length = 619

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 1/70 (1%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           LR      ++C   K C   C      +++G  C +    +    I    CI CG+C + 
Sbjct: 20  LRIAIVSTDKCKP-KKCHLECKKNCPIVKTGKFCIEVEHTSKIAYISETLCIGCGICVKK 78

Query: 113 CPVDAIVEGP 122
           CP  AI    
Sbjct: 79  CPFSAITIIN 88


>gi|145637713|ref|ZP_01793366.1| electron transport complex protein RnfB [Haemophilus influenzae
           PittHH]
 gi|145641064|ref|ZP_01796645.1| electron transport complex protein RnfB [Haemophilus influenzae
           R3021]
 gi|148827107|ref|YP_001291860.1| electron transport complex protein RnfB [Haemophilus influenzae
           PittGG]
 gi|145269115|gb|EDK09065.1| electron transport complex protein RnfB [Haemophilus influenzae
           PittHH]
 gi|145274225|gb|EDK14090.1| electron transport complex protein RnfB [Haemophilus influenzae
           22.4-21]
 gi|148718349|gb|ABQ99476.1| electron transport complex protein RnfB [Haemophilus influenzae
           PittGG]
          Length = 218

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 22/66 (33%), Gaps = 10/66 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C  C   CP  AI   +             + I    C  C LC   CP D
Sbjct: 104 FIDENMCIGCTKCIQACPVDAIIGTNK----------AMHTIIPDLCTGCELCVAPCPTD 153

Query: 117 AIVEGP 122
            I+  P
Sbjct: 154 CILMIP 159


>gi|56476980|ref|YP_158569.1| formate dehydrogenase alpha subunit, molybdenum or tungsten enzyme
           [Aromatoleum aromaticum EbN1]
 gi|56313023|emb|CAI07668.1| Formate dehydrogenase alpha subunit,molybdenum or tungsten enzyme
           [Aromatoleum aromaticum EbN1]
          Length = 950

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 27/84 (32%), Gaps = 6/84 (7%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRY 96
           F   +     R    +         CI C  C   C   Q   +    R    T     +
Sbjct: 125 FAPRAQPQPDRSHPGI---AVDLAACIQCTRCVRACREVQVNDVIGLARRGADTAIVFDF 181

Query: 97  D--IDMIKCIYCGLCQEACPVDAI 118
           D  +    C+ CG C +ACP  A+
Sbjct: 182 DDAMGTSSCVGCGECVQACPTGAL 205


>gi|297517233|ref|ZP_06935619.1| electron transport complex protein RnfB [Escherichia coli OP50]
          Length = 101

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   +             + +    C  C LC + CP   I
Sbjct: 22  DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTHCI 71

Query: 119 VEGPNFEFATETRQEL 134
              P  E     + +L
Sbjct: 72  SLQPVAETPDSWKWDL 87



 Score = 34.3 bits (77), Expect = 5.8,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C  C +ACPVDAI
Sbjct: 21  IDENNCIGCTKCIQACPVDAI 41


>gi|253699316|ref|YP_003020505.1| molybdopterin oxidoreductase [Geobacter sp. M21]
 gi|251774166|gb|ACT16747.1| molybdopterin oxidoreductase [Geobacter sp. M21]
          Length = 822

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 22/66 (33%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            +   RCI C+ C  +                        D   + C +CG C  ACP  
Sbjct: 140 ESDPNRCILCEKCVKVDHEVVGCDAIEVVNKGEAAIIDTVDGKPLDCEFCGNCVAACPTG 199

Query: 117 AIVEGP 122
           A++  P
Sbjct: 200 ALITKP 205


>gi|239627594|ref|ZP_04670625.1| Pyruvate:ferredoxin oxidoreductase [Clostridiales bacterium
           1_7_47_FAA]
 gi|239517740|gb|EEQ57606.1| Pyruvate:ferredoxin oxidoreductase [Clostridiales bacterium
           1_7_47FAA]
          Length = 1174

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 32/108 (29%), Gaps = 22/108 (20%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRC--HDGTR 91
           RG        N  + CI C  C  +CP                A       +     G  
Sbjct: 677 RGIGVKVPSWN-PDTCIQCNQCAYVCPHAVIRPLLLTEEEVQDAPKGMKTAKAIGKGGEG 735

Query: 92  RTVRYDIDMIKCIYCGLCQEACP--VDAIVEGPNFEFATETRQELYYD 137
                 + ++ C  CG C   CP    A+   P  E   E ++   +D
Sbjct: 736 YVFHMAVSVMDCSGCGSCANVCPAKEKALTMKPLEE---ERKEAAIWD 780


>gi|224368544|ref|YP_002602707.1| HdrA3' [Desulfobacterium autotrophicum HRM2]
 gi|223691260|gb|ACN14543.1| HdrA3' [Desulfobacterium autotrophicum HRM2]
          Length = 608

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 7/62 (11%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +RC  C  C A CP +A  +E G              ++  +C  CG C   CP ++I
Sbjct: 511 NADRCSGCGNCVAACPFEACRLEPG-------NGRYHCRVNPFRCTGCGTCVAVCPNNSI 563

Query: 119 VE 120
             
Sbjct: 564 QL 565



 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 14/31 (45%)

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           +     ++  +C  CG C  ACP +A    P
Sbjct: 504 KFAIARVNADRCSGCGNCVAACPFEACRLEP 534


>gi|221202549|ref|ZP_03575578.1| dihydroorotate dehydrogenase family protein [Burkholderia
           multivorans CGD2M]
 gi|221207748|ref|ZP_03580755.1| dihydroorotate dehydrogenase family protein [Burkholderia
           multivorans CGD2]
 gi|221172245|gb|EEE04685.1| dihydroorotate dehydrogenase family protein [Burkholderia
           multivorans CGD2]
 gi|221177586|gb|EEE10004.1| dihydroorotate dehydrogenase family protein [Burkholderia
           multivorans CGD2M]
          Length = 435

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 6/76 (7%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++       +    ++RCI C LC   C     + ++  R  DG R    +++    C+ 
Sbjct: 328 KYLNLQYDIKARIDQDRCIQCGLCHIACED--TSHQAITREKDGVR---HFEVVDADCVG 382

Query: 106 CGLCQEACPV-DAIVE 120
           C LC   CPV   I  
Sbjct: 383 CNLCMHVCPVEQCITM 398


>gi|254514895|ref|ZP_05126956.1| iron-sulfur cluster binding protein [gamma proteobacterium NOR5-3]
 gi|219677138|gb|EED33503.1| iron-sulfur cluster binding protein [gamma proteobacterium NOR5-3]
          Length = 473

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 21/96 (21%), Gaps = 10/96 (10%)

Query: 29  KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88
           +    ++ P E             L        +CI C  C   CP              
Sbjct: 281 RRPGDVDGPVETHFVLLDNHRSEILASDYAEMLQCIRCGACLNHCPVYMNAGGHAYGWVY 340

Query: 89  GTRRTVRYD----------IDMIKCIYCGLCQEACP 114
                                   C  CG C+E CP
Sbjct: 341 PGPMGSVLTPLLTSLEDSAHLPDACTACGRCEEVCP 376



 Score = 33.5 bits (75), Expect = 8.8,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 13/25 (52%)

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNF 124
           M++CI CG C   CPV     G  +
Sbjct: 312 MLQCIRCGACLNHCPVYMNAGGHAY 336


>gi|170765779|ref|ZP_02900590.1| 4Fe-4S binding domain protein [Escherichia albertii TW07627]
 gi|170124925|gb|EDS93856.1| 4Fe-4S binding domain protein [Escherichia albertii TW07627]
          Length = 247

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 24/69 (34%), Gaps = 11/69 (15%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                +  C  CK+C   CP  AI    G              ID  +C  CG C+  CP
Sbjct: 1   MSYIDQTSCTGCKVCLLFCPDDAIEYYDGKCS-----------IDSKQCTLCGCCEGCCP 49

Query: 115 VDAIVEGPN 123
             AI    N
Sbjct: 50  FSAIHPTTN 58


>gi|153812806|ref|ZP_01965474.1| hypothetical protein RUMOBE_03213 [Ruminococcus obeum ATCC 29174]
 gi|149831166|gb|EDM86255.1| hypothetical protein RUMOBE_03213 [Ruminococcus obeum ATCC 29174]
          Length = 623

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 10/68 (14%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           ALR++    E CI C  C   CPA AI+           +    Y I+   CI CG C++
Sbjct: 563 ALRKFHINPEFCIGCGKCAKNCPAGAIS----------GKIKSPYHINNDVCIKCGSCKD 612

Query: 112 ACPVDAIV 119
            C  DA+ 
Sbjct: 613 NCNFDAVY 620



 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 16/40 (40%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            I+             ++ I+   CI CG C + CP  AI
Sbjct: 550 HIKDKKCRAKVCTALRKFHINPEFCIGCGKCAKNCPAGAI 589


>gi|85704196|ref|ZP_01035299.1| iron-sulfur cluster-binding protein [Roseovarius sp. 217]
 gi|85671516|gb|EAQ26374.1| iron-sulfur cluster-binding protein [Roseovarius sp. 217]
          Length = 653

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 9/82 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + C  C  C ++CP+ A+                +       C+ CG+C   CP  AI
Sbjct: 501 NTDACTLCLSCVSLCPSGALMDNEDK---------PQLRFQEDACLQCGICATICPEKAI 551

Query: 119 VEGPNFEFATETRQELYYDKER 140
              P          ++  ++E 
Sbjct: 552 TLEPRMNLDDSALTQVVLNEEE 573



 Score = 39.3 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 20/55 (36%), Gaps = 11/55 (20%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             C  C  ICP  AIT +                ID + C  CG C   CP  AI
Sbjct: 277 TGCSKCLDICPTGAITPDGD-----------HVSIDPMICAGCGACAARCPSGAI 320


>gi|312144188|ref|YP_003995634.1| hydrogenase, Fe-only [Halanaerobium sp. 'sapolanicus']
 gi|311904839|gb|ADQ15280.1| hydrogenase, Fe-only [Halanaerobium sp. 'sapolanicus']
          Length = 574

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 3/78 (3%)

Query: 59  GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115
              +CI C  C  +C   Q ++     +    +  T  +D+      C  CG C   CPV
Sbjct: 148 DLNKCILCGRCVRVCEEVQGVSALQFTQRGFDSVVTTAFDMPQRDVNCANCGQCASVCPV 207

Query: 116 DAIVEGPNFEFATETRQE 133
            AI E    E      ++
Sbjct: 208 GAINEKSEIENVWAALED 225


>gi|256544554|ref|ZP_05471927.1| NADP-reducing hydrogenase, subunit C [Anaerococcus vaginalis ATCC
           51170]
 gi|256399879|gb|EEU13483.1| NADP-reducing hydrogenase, subunit C [Anaerococcus vaginalis ATCC
           51170]
          Length = 512

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 10/54 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           + CI C  C+  CP   I+           +   ++ ID  KCI CG C   CP
Sbjct: 460 DNCIGCGTCKRNCPVGCISG----------KVKEKHTIDQEKCIKCGTCYNVCP 503



 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 15/40 (37%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                  C  G+ + +        CI CG C+  CPV  I
Sbjct: 438 DHIKNKHCPAGSCKALLSYKIEDNCIGCGTCKRNCPVGCI 477


>gi|158520577|ref|YP_001528447.1| NAD-dependent epimerase/dehydratase [Desulfococcus oleovorans Hxd3]
 gi|158509403|gb|ABW66370.1| NAD-dependent epimerase/dehydratase [Desulfococcus oleovorans Hxd3]
          Length = 589

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 12/73 (16%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+ C  C   C   AITIE+G   H+             +C  CG C+  CP  A+    
Sbjct: 518 CVGCGTCVEFCGFGAITIENGKAVHN------------DQCRGCGRCETRCPNHAVRITI 565

Query: 123 NFEFATETRQELY 135
           N    TE  ++  
Sbjct: 566 NNPNVTEDVKKRI 578


>gi|222823423|ref|YP_002574997.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Campylobacter lari
           RM2100]
 gi|222538645|gb|ACM63746.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Campylobacter lari
           RM2100]
          Length = 1184

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/124 (16%), Positives = 34/124 (27%), Gaps = 24/124 (19%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA------------------QAIT 79
           FE G+T    RG   +         CI C  C ++CP                       
Sbjct: 668 FEHGTTEYEKRGVGVMVPRWIE-TNCIQCNQCASVCPHAVIRPFLIDEKELENAPAGVKE 726

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-----AIVEGPNFEFATETRQEL 134
                +     +   +  +  + C  C LC   CP        +  G   +   +   + 
Sbjct: 727 HSLNAKGVKEQKLNFKIQVSPLDCTGCELCVHECPTKEKSLVMVPLGEELDHGEQENADY 786

Query: 135 YYDK 138
            + K
Sbjct: 787 LFKK 790


>gi|328952782|ref|YP_004370116.1| formate dehydrogenase, alpha subunit [Desulfobacca acetoxidans DSM
           11109]
 gi|328453106|gb|AEB08935.1| formate dehydrogenase, alpha subunit [Desulfobacca acetoxidans DSM
           11109]
          Length = 897

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDIDM--IKCIYCGLCQE 111
                  +CI C  C  IC   Q              +   R D       C++CG C +
Sbjct: 142 MIVRDFSKCIMCGRCVRICNERQVNEAIQIGYRGHHNKIVTRADSPYIDSDCVFCGQCVQ 201

Query: 112 ACPVDAIVE 120
           ACPV A++ 
Sbjct: 202 ACPVGALIF 210


>gi|315634427|ref|ZP_07889714.1| electron transport complex protein RnfB [Aggregatibacter segnis
           ATCC 33393]
 gi|315477017|gb|EFU67762.1| electron transport complex protein RnfB [Aggregatibacter segnis
           ATCC 33393]
          Length = 197

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 21/64 (32%), Gaps = 10/64 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C  C   CP  AI   +           + + I    C  C LC E CP  
Sbjct: 108 FIDENMCIGCTKCIQACPVDAIIGSNK----------LMHTIIPDLCTGCELCVEPCPTS 157

Query: 117 AIVE 120
            I  
Sbjct: 158 CISM 161



 Score = 35.5 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 13/25 (52%), Positives = 15/25 (60%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           ID   CI C  C +ACPVDAI+   
Sbjct: 109 IDENMCIGCTKCIQACPVDAIIGSN 133


>gi|300114448|ref|YP_003761023.1| electron transport complex RnfABCDGE type subunit C [Nitrosococcus
           watsonii C-113]
 gi|299540385|gb|ADJ28702.1| electron transport complex, RnfABCDGE type, C subunit
           [Nitrosococcus watsonii C-113]
          Length = 515

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 21/67 (31%), Gaps = 2/67 (2%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            CI C  C   CP   +  +               D  +  CI CG C   CP   I   
Sbjct: 368 PCIRCGACVEACPVGLLPQQLYWHT-RAKELDKTQDYHLFDCIECGCCAYVCPSH-IPLV 425

Query: 122 PNFEFAT 128
             + +A 
Sbjct: 426 QYYRYAK 432


>gi|242239348|ref|YP_002987529.1| electron transport complex protein RnfB [Dickeya dadantii Ech703]
 gi|242131405|gb|ACS85707.1| electron transport complex, RnfABCDGE type, B subunit [Dickeya
           dadantii Ech703]
          Length = 191

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 24/83 (28%), Gaps = 10/83 (12%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
               S     E   +     E  CI C  C   CP  AI   +             + + 
Sbjct: 93  PQPLSDDIPPEPQRQVAWIDESNCIGCTKCIQACPVDAIVGST----------RAIHTVI 142

Query: 100 MIKCIYCGLCQEACPVDAIVEGP 122
              C  C LC   CP D I   P
Sbjct: 143 SDLCTGCDLCIPPCPTDCIELRP 165


>gi|218695758|ref|YP_002403425.1| dihydropyrimidine dehydrogenase [Escherichia coli 55989]
 gi|218352490|emb|CAU98267.1| putative oxidoreductase subunit [Escherichia coli 55989]
          Length = 401

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +       ++C+ C  C   C         G +  + + +T     +  K
Sbjct: 314 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 367

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 368 CVGCLLCGHVCPVGCIELG 386


>gi|213161193|ref|ZP_03346903.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 238

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +      +E+C+ C  C   C         G +  +    +     +  K
Sbjct: 151 IPAEDLDRSYIVYPRINQEKCVGCGRCYISCYDG------GHQAMEWDEHSHTPHCNTEK 204

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 205 CVGCLLCGHVCPVACIDLG 223


>gi|218244988|ref|YP_002370359.1| bidirectional hydrogenase complex protein HoxU [Cyanothece sp. PCC
           8801]
 gi|218165466|gb|ACK64203.1| 4Fe-4S ferredoxin, iron-sulphur binding, conserved site [Cyanothece
           sp. PCC 8801]
          Length = 238

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 28/89 (31%), Gaps = 12/89 (13%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRR 92
            +P  K   S    G            RCI C  C  +C     A   +   R  +    
Sbjct: 128 QFPDRKIDVSHPQFG--------IDHNRCILCTRCVRVCDEIEGAHVWDVANRGGNSFIV 179

Query: 93  TVRYDID--MIKCIYCGLCQEACPVDAIV 119
           +        +  C  CG C EACP  AI 
Sbjct: 180 SGINQPWGDVDACTSCGKCVEACPTGAIF 208


>gi|251798657|ref|YP_003013388.1| dihydropyrimidine dehydrogenase [Paenibacillus sp. JDR-2]
 gi|247546283|gb|ACT03302.1| dihydroorotate dehydrogenase family protein [Paenibacillus sp.
           JDR-2]
          Length = 434

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 31/105 (29%), Gaps = 14/105 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117
            EE CI C  C   C   +          DG             C+ C LC   CPV+ A
Sbjct: 338 HEENCIVCNKCHIACEDTSHQCIERLTTDDGRAYLKV---REEDCVGCNLCSIVCPVEGA 394

Query: 118 IVE----GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158
           I            +   RQ+         + GD  ++    +   
Sbjct: 395 ISMVEIPSGELPMSWNARQKAVA------SVGDSNQAPGGASKEA 433


>gi|194736993|ref|YP_002115276.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194712495|gb|ACF91716.1| dihydroorotate dehydrogenase family protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
          Length = 411

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +      +E+C+ C  C   C         G +  +    +     +  K
Sbjct: 324 IPAEDLDRSYIVYPQINQEKCVGCGRCYISCYDG------GHQAMEWDEHSRTPHCNTEK 377

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 378 CVGCLLCGHVCPVACIDLG 396


>gi|167624997|ref|YP_001675291.1| FAD linked oxidase domain-containing protein [Shewanella
           halifaxensis HAW-EB4]
 gi|167355019|gb|ABZ77632.1| FAD linked oxidase domain protein [Shewanella halifaxensis HAW-EB4]
          Length = 939

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 32/93 (34%), Gaps = 9/93 (9%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           E +     I  +         +     D  + KCI CG C++ CP  A+   P    AT 
Sbjct: 509 EGLLNPGVILNDDNQIHVKNIKPCPVVDDLIDKCIECGFCEKTCPTSALNMSPRQRIATL 568

Query: 130 TRQELYYDKERLLNNGDRWESEIVRNIVTDSPY 162
            R+      ERL  +G          +   + Y
Sbjct: 569 -RE-----IERLEQSG---GKRAAEQMRAAAKY 592



 Score = 38.2 bits (87), Expect = 0.41,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 18/76 (23%)

Query: 57  PNGEERCIACKLCEAICPAQAITIES-----------------GPRCHDGTRRTVRYDID 99
            +  ++CI C  CE  CP  A+ +                   G R  +  R   +YD+ 
Sbjct: 536 DDLIDKCIECGFCEKTCPTSALNMSPRQRIATLREIERLEQSGGKRAAEQMRAAAKYDVV 595

Query: 100 MIKCIYCGLCQEACPV 115
              C  C LC  ACPV
Sbjct: 596 -DTCAACQLCTIACPV 610


>gi|197117056|ref|YP_002137483.1| Fe(III) reductase subunit alpha [Geobacter bemidjiensis Bem]
 gi|197086416|gb|ACH37687.1| Fe(III) reductase, alpha subunit [Geobacter bemidjiensis Bem]
          Length = 822

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 22/66 (33%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            +   RCI C+ C  +                        D   + C +CG C  ACP  
Sbjct: 140 ESDPNRCILCEKCVKVDHEIVGCDAIEVVNKGEAAIIDTVDGKPLNCEFCGNCVAACPTG 199

Query: 117 AIVEGP 122
           A++  P
Sbjct: 200 ALITKP 205


>gi|187927967|ref|YP_001898454.1| ferredoxin [Ralstonia pickettii 12J]
 gi|187724857|gb|ACD26022.1| electron transport complex, RnfABCDGE type, B subunit [Ralstonia
           pickettii 12J]
          Length = 276

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 23/65 (35%), Gaps = 10/65 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ERCI C LC   CP  AI                 + +    C  C LC   CPVD I
Sbjct: 90  DPERCIGCTLCIQACPVDAIVGAPK----------AMHTVLEDWCTGCDLCVPPCPVDCI 139

Query: 119 VEGPN 123
              P 
Sbjct: 140 DMIPI 144



 Score = 39.3 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/21 (66%), Positives = 16/21 (76%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID  +CI C LC +ACPVDAI
Sbjct: 89  IDPERCIGCTLCIQACPVDAI 109


>gi|21675056|ref|NP_663121.1| putative glutamate synthase (NADPH) small subunit [Chlorobium
           tepidum TLS]
 gi|21648293|gb|AAM73463.1| iron-sulfur cluster-binding protein, gltD family [Chlorobium
           tepidum TLS]
          Length = 577

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 28/96 (29%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
           +  +AK T   P                 +     +RC++C  C       +   +    
Sbjct: 477 HTPQAKRTSIKPEVVVGNHDELLEALTPEQAITESKRCMSCGFCFDCKQCVSFCPQEAIT 536

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
                    +   D  KC+ C LC   CP   I  G
Sbjct: 537 RFRDNPAGEKVYTDYTKCVGCHLCSLVCPCGYIQMG 572


>gi|18310420|ref|NP_562354.1| anaerobic sulfite reductase subunit C [Clostridium perfringens str.
           13]
 gi|110799551|ref|YP_696129.1| anaerobic sulfite reductase, subunit C [Clostridium perfringens
           ATCC 13124]
 gi|168206343|ref|ZP_02632348.1| anaerobic sulfite reductase, subunit C [Clostridium perfringens E
           str. JGS1987]
 gi|168210029|ref|ZP_02635654.1| anaerobic sulfite reductase, subunit C [Clostridium perfringens B
           str. ATCC 3626]
 gi|168214452|ref|ZP_02640077.1| anaerobic sulfite reductase, subunit C [Clostridium perfringens CPE
           str. F4969]
 gi|168216826|ref|ZP_02642451.1| anaerobic sulfite reductase, subunit C [Clostridium perfringens
           NCTC 8239]
 gi|169347242|ref|ZP_02866181.1| anaerobic sulfite reductase, subunit C [Clostridium perfringens C
           str. JGS1495]
 gi|182626960|ref|ZP_02954692.1| anaerobic sulfite reductase, subunit C [Clostridium perfringens D
           str. JGS1721]
 gi|18145100|dbj|BAB81144.1| anaerobic sulfite reductase subunit C [Clostridium perfringens str.
           13]
 gi|110674198|gb|ABG83185.1| anaerobic sulfite reductase, subunit C [Clostridium perfringens
           ATCC 13124]
 gi|169296638|gb|EDS78769.1| anaerobic sulfite reductase, subunit C [Clostridium perfringens C
           str. JGS1495]
 gi|170662184|gb|EDT14867.1| anaerobic sulfite reductase, subunit C [Clostridium perfringens E
           str. JGS1987]
 gi|170711911|gb|EDT24093.1| anaerobic sulfite reductase, subunit C [Clostridium perfringens B
           str. ATCC 3626]
 gi|170714081|gb|EDT26263.1| anaerobic sulfite reductase, subunit C [Clostridium perfringens CPE
           str. F4969]
 gi|177907696|gb|EDT70314.1| anaerobic sulfite reductase, subunit C [Clostridium perfringens D
           str. JGS1721]
 gi|182381086|gb|EDT78565.1| anaerobic sulfite reductase, subunit C [Clostridium perfringens
           NCTC 8239]
          Length = 326

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 25/88 (28%), Gaps = 8/88 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +         G   +        RC++C  C   C  +A    S             
Sbjct: 147 CPNDCIKARMHDFGIIGMTEPQYERNRCVSCGACVRACKKKATGALSFENFKVVR----- 201

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPN 123
              D  KCI CG C   CP +A      
Sbjct: 202 ---DGSKCIGCGECVMNCPTNAWTRSKE 226


>gi|329898086|ref|ZP_08272295.1| Electron transport complex protein RnfB [gamma proteobacterium
           IMCC3088]
 gi|328920958|gb|EGG28383.1| Electron transport complex protein RnfB [gamma proteobacterium
           IMCC3088]
          Length = 198

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 27/82 (32%), Gaps = 10/82 (12%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E          E         E+ CI C  C   CP  AI   +           + + +
Sbjct: 96  EALPLDAEHGVEKPKTVAYIHEDECIGCTKCIQACPVDAILGAAK----------LMHTV 145

Query: 99  DMIKCIYCGLCQEACPVDAIVE 120
              +C  C LC E CPVD I  
Sbjct: 146 IASECTGCDLCVEPCPVDCIDM 167


>gi|260173417|ref|ZP_05759829.1| pyruvate-flavodoxin oxidoreductase [Bacteroides sp. D2]
 gi|315921689|ref|ZP_07917929.1| pyruvate-flavodoxin oxidoreductase [Bacteroides sp. D2]
 gi|313695564|gb|EFS32399.1| pyruvate-flavodoxin oxidoreductase [Bacteroides sp. D2]
          Length = 1183

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 28/81 (34%), Gaps = 15/81 (18%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG  A     N  E CI C  C  +CP                A   +           T
Sbjct: 676 RGVAAFVPEWN-PENCIQCNKCAYVCPHASIRPFVLDAEEQKGAKFEQLKAVGKVFDGMT 734

Query: 94  VRYDIDMIKCIYCGLCQEACP 114
            R  +D++ C+ CG C + CP
Sbjct: 735 FRIQVDVLDCLGCGNCADICP 755


>gi|269791767|ref|YP_003316671.1| NADH dehydrogenase (quinone) [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269099402|gb|ACZ18389.1| NADH dehydrogenase (quinone) [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 596

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 10/66 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L RY    E+C  C LC  +CPA AI+           +    + ID  KC+ CG C  A
Sbjct: 538 LVRYVIDPEKCKGCTLCAKVCPADAISG----------KVREPHVIDQDKCVKCGACYTA 587

Query: 113 CPVDAI 118
           C   AI
Sbjct: 588 CKFGAI 593



 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 8/62 (12%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
            +E         +  VRY ID  KC  C LC + CP DAI        + + R+    D+
Sbjct: 524 HVEEKRCPAGKCKDLVRYVIDPEKCKGCTLCAKVCPADAI--------SGKVREPHVIDQ 575

Query: 139 ER 140
           ++
Sbjct: 576 DK 577


>gi|254510639|ref|ZP_05122706.1| dihydropyrimidine dehydrogenase [NADP+] [Rhodobacteraceae bacterium
           KLH11]
 gi|221534350|gb|EEE37338.1| dihydropyrimidine dehydrogenase [NADP+] [Rhodobacteraceae bacterium
           KLH11]
          Length = 434

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 8/78 (10%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    +++CI C  C A C       E              +++   +C+ 
Sbjct: 330 QYLNLNYVAKAKIDQDQCIKCGRCYAAC-------EDTSHQAISMSAERVFEVIDEECVA 382

Query: 106 CGLCQEACPVD-AIVEGP 122
           C LC + CPV+  I   P
Sbjct: 383 CNLCVDVCPVEGCISMIP 400


>gi|253701406|ref|YP_003022595.1| NADH dehydrogenase (quinone) [Geobacter sp. M21]
 gi|251776256|gb|ACT18837.1| NADH dehydrogenase (quinone) [Geobacter sp. M21]
          Length = 636

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 15/92 (16%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            L+Y F+ +   +   ++            L  +     +C  C  C   CPA AI    
Sbjct: 534 TLKY-FRHEYEAHIKEKRCPALSC----KELIAFHIDPAKCKGCGSCLRKCPATAIEG-- 586

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                    +   + ID  KC  CG C EACP
Sbjct: 587 --------GKKTIHVIDQEKCTKCGTCIEACP 610



 Score = 38.5 bits (88), Expect = 0.31,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 18/53 (33%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           +         I+         +  + + ID  KC  CG C   CP  AI  G 
Sbjct: 536 KYFRHEYEAHIKEKRCPALSCKELIAFHIDPAKCKGCGSCLRKCPATAIEGGK 588


>gi|188584100|ref|YP_001927545.1| formate dehydrogenase, alpha subunit [Methylobacterium populi
           BJ001]
 gi|179347598|gb|ACB83010.1| formate dehydrogenase, alpha subunit [Methylobacterium populi
           BJ001]
          Length = 950

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 30/98 (30%), Gaps = 2/98 (2%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVR 95
             K ++      + +   +     +CI C  C   C        +    R  D       
Sbjct: 148 HVKPTSDRYLPKDESNPYFTYDPSKCIVCNRCVRACEETQGTFALTIEGRGFDSRVAAGP 207

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
            +    +C+ CG C +ACP   + E     +      E
Sbjct: 208 TNFMQSECVSCGACVQACPTATLQEKTVHLYGQPEHSE 245


>gi|147677003|ref|YP_001211218.1| iron only hydrogenase large subunit [Pelotomaculum
           thermopropionicum SI]
 gi|146273100|dbj|BAF58849.1| iron only hydrogenase large subunit, C-terminal domain
           [Pelotomaculum thermopropionicum SI]
          Length = 530

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/131 (16%), Positives = 35/131 (26%), Gaps = 22/131 (16%)

Query: 5   RCNVSFLFLKEFVGAFFLCL--------RYFFKAKTTINYPFEKGSTSPRFRGEHALRRY 56
           R  +  +     +      L         +              G+   + RG   +   
Sbjct: 23  RSFLKMIAGTGLLVGLSGALAGCVEKSPEHAGGKGWLPYQYNVAGNLPAQVRGRVPIDAD 82

Query: 57  P----NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
                  +++CI C  C  +C                        +D   CI CG C  A
Sbjct: 83  NPSITRDDQKCILCGQCLEVC----------KNVESVYGYYDLPVVDETICINCGQCSMA 132

Query: 113 CPVDAIVEGPN 123
           CP  AI E  +
Sbjct: 133 CPSGAISERDD 143


>gi|91782519|ref|YP_557725.1| ferredoxin [Burkholderia xenovorans LB400]
 gi|91686473|gb|ABE29673.1| Electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           xenovorans LB400]
          Length = 279

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 23/64 (35%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ CI C LC   CP  AI                 + +    C  C LC   CPVD I
Sbjct: 85  DEQVCIGCTLCMQACPVDAIVGAPKQ----------MHTVIAELCTGCDLCVPPCPVDCI 134

Query: 119 VEGP 122
              P
Sbjct: 135 ALPP 138



 Score = 37.0 bits (84), Expect = 0.97,   Method: Composition-based stats.
 Identities = 14/21 (66%), Positives = 15/21 (71%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C LC +ACPVDAI
Sbjct: 84  IDEQVCIGCTLCMQACPVDAI 104


>gi|332880411|ref|ZP_08448085.1| pyruvate synthase [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332681399|gb|EGJ54322.1| pyruvate synthase [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 1182

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 47/146 (32%), Gaps = 36/146 (24%)

Query: 28  FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------QAIT 79
           FK      +P  +G+ +   RG  A     N  + CI C  C  +CP          A  
Sbjct: 658 FKGIEDGTWP--QGTAAYEKRGVAAFVPTWN-ADNCIQCNKCAYVCPHASIRPFVLDAEE 714

Query: 80  I-------ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP--------------VDAI 118
           +                     R  + ++ C+ CG C + CP                 +
Sbjct: 715 MKGFNAPVIEMKAPAAMKGMNFRIQVSVMDCLGCGNCADVCPGNPKLGKALTMVPLEQEL 774

Query: 119 VEGPNFEFATETRQELYYDKERLLNN 144
            E PN+E+  +        K+ L++ 
Sbjct: 775 AEAPNWEYCVKN----VKSKQDLVDI 796


>gi|332654613|ref|ZP_08420356.1| [Fe] hydrogenase gamma [Ruminococcaceae bacterium D16]
 gi|332516577|gb|EGJ46183.1| [Fe] hydrogenase gamma [Ruminococcaceae bacterium D16]
          Length = 696

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 9/63 (14%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E+CI C +C+  C      + +      G +           CIYCG C   CPVD+I E
Sbjct: 37  EKCIRCGMCKEACTNLMGVLGTYSLEETGGK---------AVCIYCGQCANVCPVDSITE 87

Query: 121 GPN 123
              
Sbjct: 88  RDE 90


>gi|325529420|gb|EGD06341.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Burkholderia sp.
           TJI49]
          Length = 273

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 30/89 (33%), Gaps = 6/89 (6%)

Query: 50  EHALRRYPNGEERCIA-CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           +  L        +C   C  C  +C   AI                   +D  +CI C  
Sbjct: 31  QGVLGMPRFDPAKCEPGCDACARVCDTHAIAFVPSEDG-----HAAPPAVDFGRCIVCQR 85

Query: 109 CQEACPVDAIVEGPNFEFATETRQELYYD 137
           C +ACP  A     ++  A   R +L +D
Sbjct: 86  CTQACPTGAFTPSEDWAVAVHERADLKWD 114


>gi|297521229|ref|ZP_06939615.1| electron transport complex protein RnfC [Escherichia coli OP50]
          Length = 394

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 191 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 248

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 249 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 297


>gi|254496015|ref|ZP_05108918.1| iron-sulfur cluster binding protein [Legionella drancourtii LLAP12]
 gi|254354764|gb|EET13396.1| iron-sulfur cluster binding protein [Legionella drancourtii LLAP12]
          Length = 204

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 37/98 (37%), Gaps = 21/98 (21%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            CI C  C   CP  AI          G+ + +   I    C  CGLC   CPVD I   
Sbjct: 83  ECIGCTKCIKACPVDAI---------IGSGKLMHAVIAHE-CTGCGLCVAPCPVDCIDMV 132

Query: 122 ----PNF--EFATETRQELYYDKERLLNNGDRWESEIV 153
               P++  E A   RQ     + RLL   D  E +  
Sbjct: 133 TLAAPDYDQELA---RQRFNAKQTRLLR--DEHEQQQA 165



 Score = 36.2 bits (82), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/28 (46%), Positives = 15/28 (53%)

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           R      I   +CI C  C +ACPVDAI
Sbjct: 72  RAPSVAVIREAECIGCTKCIKACPVDAI 99


>gi|221215696|ref|ZP_03588657.1| dihydroorotate dehydrogenase family protein [Burkholderia
           multivorans CGD1]
 gi|221164398|gb|EED96883.1| dihydroorotate dehydrogenase family protein [Burkholderia
           multivorans CGD1]
          Length = 435

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 6/76 (7%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++       +    ++RCI C LC   C     + ++  R  DG R    +++    C+ 
Sbjct: 328 KYLNLQYDIKARIDQDRCIQCGLCHIACED--TSHQAITREKDGVR---HFEVVDADCVG 382

Query: 106 CGLCQEACPV-DAIVE 120
           C LC   CPV   I  
Sbjct: 383 CNLCMHVCPVEQCITM 398


>gi|163741305|ref|ZP_02148697.1| iron-sulfur cluster-binding protein [Phaeobacter gallaeciensis
           2.10]
 gi|161385658|gb|EDQ10035.1| iron-sulfur cluster-binding protein [Phaeobacter gallaeciensis
           2.10]
          Length = 431

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 9/66 (13%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C  C+ C  +CP  A+          G       D     C+ CGLC   C  +AI   
Sbjct: 249 DCTLCQACTWVCPTNAL---------IGAENGGGLDFVEADCMQCGLCVSVCRQNAIRLV 299

Query: 122 PNFEFA 127
           P  E +
Sbjct: 300 PRLELS 305


>gi|120601153|ref|YP_965553.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Desulfovibrio vulgaris DP4]
 gi|120561382|gb|ABM27126.1| glutamate synthase (NADPH) GltB3 subunit [Desulfovibrio vulgaris
           DP4]
          Length = 777

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 6/61 (9%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C  C +CE ICP  AI+     R   G  R     +D  +CI CG C  ACP        
Sbjct: 719 CRDCGVCETICPQGAIS-----RRDLGEGRFEM-TVDGERCIGCGFCAGACPCGIWNLVE 772

Query: 123 N 123
           N
Sbjct: 773 N 773


>gi|38569281|gb|AAR24315.1| reductive dehalogenase homologous protein RdhA11 [Dehalococcoides
           sp. CBDB1]
          Length = 479

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 3/74 (4%)

Query: 56  YPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
                + C  C +C   CP  AI         R        + +  D+  C +C +CQ  
Sbjct: 359 DFGARKFCETCGICADSCPQGAIQQGEATWDARYAWENSGYLGWRNDLTLCNHCPVCQGV 418

Query: 113 CPVDAIVEGPNFEF 126
           CP +A  +    E 
Sbjct: 419 CPFNAFDKSGVHEI 432


>gi|254465707|ref|ZP_05079118.1| 4Fe-4S binding domain protein [Rhodobacterales bacterium Y4I]
 gi|206686615|gb|EDZ47097.1| 4Fe-4S binding domain protein [Rhodobacterales bacterium Y4I]
          Length = 318

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 9/69 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              RC  C  C  +CP+ A+++                      C  CGLC   CP  A+
Sbjct: 222 DAARCTHCSSCVWVCPSDALSLTENGGALS---------FVESLCFQCGLCVSICPQRAL 272

Query: 119 VEGPNFEFA 127
              P  + +
Sbjct: 273 HMAPGMDLS 281


>gi|187778598|ref|ZP_02995071.1| hypothetical protein CLOSPO_02193 [Clostridium sporogenes ATCC
           15579]
 gi|187772223|gb|EDU36025.1| hypothetical protein CLOSPO_02193 [Clostridium sporogenes ATCC
           15579]
          Length = 411

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 25/84 (29%), Gaps = 6/84 (7%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           K            +      EE C+ C  C   C         G +         +  ++
Sbjct: 321 KNIIPAEDLDRGYIVYPKFNEENCVGCGRCYISCYDG------GHQAIKWDVENRKPILE 374

Query: 100 MIKCIYCGLCQEACPVDAIVEGPN 123
              C+ C LC   CPV  I +G  
Sbjct: 375 KENCVGCHLCANVCPVQCISKGEI 398


>gi|167761226|ref|ZP_02433353.1| hypothetical protein CLOSCI_03631 [Clostridium scindens ATCC 35704]
 gi|167660892|gb|EDS05022.1| hypothetical protein CLOSCI_03631 [Clostridium scindens ATCC 35704]
          Length = 595

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 36/97 (37%), Gaps = 15/97 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            LRY FK +   +   +K           AL  Y    ++C  C LC   CP  AIT   
Sbjct: 512 TLRY-FKDEYIAHIVDKKCPAGVC----KALLSYKIDADKCKGCTLCARTCPNDAITGAV 566

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
                        + I+  KC+ CG C E C   AI 
Sbjct: 567 KEP----------HVINQDKCVKCGACMEKCRFGAIY 593


>gi|218778029|ref|YP_002429347.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218759413|gb|ACL01879.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 352

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 12/60 (20%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +E+CIAC  C   C   AIT+E                ++  +CI CG+C   CP DA+
Sbjct: 274 DDEKCIACGACAEACHMDAITVEDAA------------FVNPDRCIGCGVCVSQCPSDAM 321


>gi|23450982|gb|AAN32622.1|AF373594_2 putative benzoyl-CoA oxygenase [Thauera aromatica]
          Length = 416

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 11/65 (16%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           R++    E CI C  CE +CP  AIT ++             Y +    C  C  C   C
Sbjct: 12  RQHLIDPEVCIRCNTCEEMCPINAITHDA-----------RNYVVKFDVCKGCLACISPC 60

Query: 114 PVDAI 118
           P  AI
Sbjct: 61  PTGAI 65



 Score = 34.7 bits (78), Expect = 3.9,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVE 120
           ID   CI C  C+E CP++AI  
Sbjct: 16  IDPEVCIRCNTCEEMCPINAITH 38


>gi|57242553|ref|ZP_00370491.1| pyruvate ferredoxin/flavodoxin oxidoreductase family protein
           [Campylobacter upsaliensis RM3195]
 gi|57016838|gb|EAL53621.1| pyruvate ferredoxin/flavodoxin oxidoreductase family protein
           [Campylobacter upsaliensis RM3195]
          Length = 1187

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 29/96 (30%), Gaps = 19/96 (19%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA------------------QAIT 79
           FE G+T    RG   +         CI C  C ++CP                       
Sbjct: 668 FEHGTTEFEKRGVGVMVPRWIE-ANCIQCNQCASVCPHAVIRPFLINDEEMAKAPRGVKE 726

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
                +   G + + +  +  + C  C LC   CP 
Sbjct: 727 HALDAKGTKGEKLSFKIQVSPLDCTGCELCVHECPT 762



 Score = 33.9 bits (76), Expect = 6.8,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 11/35 (31%), Gaps = 2/35 (5%)

Query: 100 MIKCIYCGLCQEACPVDAI--VEGPNFEFATETRQ 132
              CI C  C   CP   I      + E A   R 
Sbjct: 689 EANCIQCNQCASVCPHAVIRPFLINDEEMAKAPRG 723


>gi|332093489|gb|EGI98547.1| hypothetical protein SB359474_2529 [Shigella boydii 3594-74]
          Length = 289

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +       ++C+ C  C   C         G +  + + +T     +  K
Sbjct: 202 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 255

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 256 CVGCLLCGHVCPVGCIELG 274


>gi|323698408|ref|ZP_08110320.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfovibrio sp.
           ND132]
 gi|323458340|gb|EGB14205.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfovibrio
           desulfuricans ND132]
          Length = 1196

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/117 (18%), Positives = 35/117 (29%), Gaps = 18/117 (15%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR------ 92
              STS   +   A++      + CI C  C  +CP  A+                    
Sbjct: 662 VPLSTSKYEKRGVAIKVPEWIADNCIQCNQCAFVCPHAALRPVLVTEDEMKNAPAAFTTQ 721

Query: 93  ----------TVRYDIDMIKCIYCGLCQEACP--VDAIVEGPNFEFATETRQELYYD 137
                       R  ++ + C+ CG C + CP    A+V  P      E      + 
Sbjct: 722 NAKGKDVAGLKYRMQVNTLDCLGCGNCADICPAKEKALVMKPIATQTGEQVPNFDFT 778


>gi|310778430|ref|YP_003966763.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
           [Ilyobacter polytropus DSM 2926]
 gi|309747753|gb|ADO82415.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
           [Ilyobacter polytropus DSM 2926]
          Length = 592

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 59  GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115
             ++CI C+ CE +C   Q   + SG            ++ D+    C YCG C   CPV
Sbjct: 148 DIDKCIMCRRCETMCNVIQTCGVLSGVNRGFEAVVAPAFEQDLEDTACTYCGQCVAVCPV 207

Query: 116 DAIVE 120
            A+ E
Sbjct: 208 GALHE 212


>gi|257094523|ref|YP_003168164.1| electron transport complex protein RnfC [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047047|gb|ACV36235.1| electron transport complex, RnfABCDGE type, C subunit [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 583

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 22/67 (32%), Gaps = 2/67 (2%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            CI C  C  +CP +    E               +  +  CI CG C   CP   I   
Sbjct: 368 PCIRCGACAEVCPHELQPFELY-WFARARNFGKTQEYYLFDCIECGCCSYVCPSH-IPLV 425

Query: 122 PNFEFAT 128
             F FA 
Sbjct: 426 QYFRFAK 432



 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 12/29 (41%), Gaps = 4/29 (13%)

Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETR 131
           CI CG C E CP     E   FE     R
Sbjct: 369 CIRCGACAEVCP----HELQPFELYWFAR 393


>gi|240168691|ref|ZP_04747350.1| pyruvate ferredoxin/flavodoxin oxidoreductase family protein
           [Mycobacterium kansasii ATCC 12478]
          Length = 1190

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 28/100 (28%), Gaps = 24/100 (24%)

Query: 58  NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY--DIDMI 101
              + CI C  C  +CP               +A         +       RY   + + 
Sbjct: 687 WDPDTCIQCGNCAFVCPHSVIRTTFYQQDLLREAPESFPSAPLNTVGLPGARYTLQVYVE 746

Query: 102 KCIYCGLCQEACP--------VDAIVEGPNFEFATETRQE 133
            C  C LC EACP          AI          E R+ 
Sbjct: 747 DCTGCNLCVEACPAVVPGTPVTKAINLARREPLVAEAREN 786


>gi|167623339|ref|YP_001673633.1| hydrogenase, Fe-only [Shewanella halifaxensis HAW-EB4]
 gi|167353361|gb|ABZ75974.1| hydrogenase, Fe-only [Shewanella halifaxensis HAW-EB4]
          Length = 410

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 10/62 (16%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            +C  C  C+  CP  AI   SG            + I+  KC+ CG C   CP  AI+E
Sbjct: 20  SKCKGCDACQKFCPTNAIEGASG----------AVHSINKEKCLSCGQCLINCPFGAIIE 69

Query: 121 GP 122
             
Sbjct: 70  TH 71



 Score = 37.0 bits (84), Expect = 0.79,   Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 97  DIDMIKCIYCGLCQEACPVDAI 118
           +I   KC  C  CQ+ CP +AI
Sbjct: 16  EIQASKCKGCDACQKFCPTNAI 37


>gi|126178316|ref|YP_001046281.1| hypothetical protein Memar_0366 [Methanoculleus marisnigri JR1]
 gi|125861110|gb|ABN56299.1| protein of unknown function DUF362 [Methanoculleus marisnigri JR1]
          Length = 392

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 11/59 (18%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           CI C  CE ICP  AIT+  G              ID+ +CI C  C E C   AI   
Sbjct: 332 CIGCGKCERICPVHAITVAEGKA-----------TIDLSRCIRCYCCHEMCTEHAIALS 379



 Score = 40.5 bits (93), Expect = 0.088,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 14/31 (45%)

Query: 88  DGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            G     R  +    CI CG C+  CPV AI
Sbjct: 317 FGRTYAPRPGVIASSCIGCGKCERICPVHAI 347


>gi|158320025|ref|YP_001512532.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
 gi|158140224|gb|ABW18536.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
          Length = 623

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/73 (32%), Positives = 28/73 (38%), Gaps = 10/73 (13%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R    L+      E C  C  C  ICP  AI            +    Y I+  KCI CG
Sbjct: 560 RTCQGLKVIEITSELCKGCSKCSRICPVGAIDG----------KIKEPYIINQEKCIKCG 609

Query: 108 LCQEACPVDAIVE 120
            C E+C   AI E
Sbjct: 610 ACIESCAFAAIKE 622


>gi|83589957|ref|YP_429966.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica ATCC
           39073]
 gi|83572871|gb|ABC19423.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Moorella
           thermoacetica ATCC 39073]
          Length = 365

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 32/102 (31%), Gaps = 22/102 (21%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           +  F   L+       +              +  H+       EE CI C  C   CPA 
Sbjct: 159 LVGFGGTLKNLGMGCAS----------PSGKQMMHSDVLPRVEEEECIGCGKCRRWCPAG 208

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           AIT+                 I+   CI CG C   CP  AI
Sbjct: 209 AITVTEKA------------TINGELCIGCGECTVTCPRRAI 238



 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 16/41 (39%)

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            + P         V   ++  +CI CG C+  CP  AI   
Sbjct: 173 CASPSGKQMMHSDVLPRVEEEECIGCGKCRRWCPAGAITVT 213


>gi|148257287|ref|YP_001241872.1| dihydropyrimidine dehydrogenase [Bradyrhizobium sp. BTAi1]
 gi|146409460|gb|ABQ37966.1| dihydrouracil dehydrogenase (NAD+) / dihydropyrimidine
           dehydrogenase (NADP+) [Bradyrhizobium sp. BTAi1]
          Length = 441

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 6/97 (6%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
               T  +      + +    ++ CI C  C   C        S             +++
Sbjct: 322 VPRKTEWQHLNLDYVVKAHIDQDLCIKCGRCHIGCED-----TSHQAISSLKDGQRHFEV 376

Query: 99  DMIKCIYCGLCQEACP-VDAIVEGPNFEFATETRQEL 134
              +C+ C LC   CP  + I   P  E   + R  L
Sbjct: 377 IEEECVGCNLCAVVCPIENCITMVPLREGEVDRRTGL 413


>gi|325262543|ref|ZP_08129280.1| protein HymB [Clostridium sp. D5]
 gi|324032375|gb|EGB93653.1| protein HymB [Clostridium sp. D5]
          Length = 628

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 10/69 (14%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           A+R++    ERC  C  C   CP  AI+ +              Y ID  KCI CG C+ 
Sbjct: 568 AMRQFIISAERCKGCSKCARNCPVGAISGQIKEP----------YVIDNEKCIKCGACES 617

Query: 112 ACPVDAIVE 120
           AC   AI  
Sbjct: 618 ACAFGAIHI 626



 Score = 37.4 bits (85), Expect = 0.65,   Method: Composition-based stats.
 Identities = 9/41 (21%), Positives = 13/41 (31%)

Query: 78  ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +              ++ I   +C  C  C   CPV AI
Sbjct: 554 QHVVEKKCVSHNCTAMRQFIISAERCKGCSKCARNCPVGAI 594


>gi|323142033|ref|ZP_08076881.1| pyruvate synthase [Phascolarctobacterium sp. YIT 12067]
 gi|322413420|gb|EFY04291.1| pyruvate synthase [Phascolarctobacterium sp. YIT 12067]
          Length = 1170

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 25/89 (28%), Gaps = 17/89 (19%)

Query: 51  HALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY 96
            A+       + CI C  C  +CP               +A                   
Sbjct: 676 IAIDVPEWQIDTCIQCNQCAFVCPHAAIRPVLMTEEEAAKAPATLPSKPAIGAKGLMFSM 735

Query: 97  DIDMIKCIYCGLCQEACPVD---AIVEGP 122
            I  + C  CG C + CP     A+V  P
Sbjct: 736 SISPLDCTGCGNCAQVCPAPKAKALVMKP 764


>gi|320178009|gb|EFW52991.1| Pyruvate-flavodoxin oxidoreductase [Shigella boydii ATCC 9905]
          Length = 1174

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PA--------------QAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPV-- 115
           P                A              R  +Y   +    CI C LC E CP   
Sbjct: 700 PHSTIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCIGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|295109804|emb|CBL23757.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta
           subunits [Ruminococcus obeum A2-162]
          Length = 287

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 11/58 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + CI C +CE  C  +AIT   G              ID  KC YCG C ++CPVDA 
Sbjct: 164 DTCIHCGVCEKACREEAITFRDGKLV-----------IDTQKCNYCGRCAKSCPVDAW 210


>gi|163858399|ref|YP_001632697.1| quinol dehydrogenase membrane component [Bordetella petrii DSM
           12804]
 gi|163262127|emb|CAP44429.1| napH [Bordetella petrii]
          Length = 310

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 20/72 (27%), Gaps = 5/72 (6%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           LR    G   C  C  C +ICP          R            I    C  CG C + 
Sbjct: 238 LRVNAAGRAACDDCMDCYSICP-----EPQVIRPALKAAGQDHPVILDADCTTCGRCIDV 292

Query: 113 CPVDAIVEGPNF 124
           CP         F
Sbjct: 293 CPQQVFRMSHRF 304


>gi|46581693|ref|YP_012501.1| pyridine nucleotide-disulfide oxidoreductase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|46451116|gb|AAS97761.1| pyridine nucleotide-disulfide oxidoreductase [Desulfovibrio
           vulgaris str. Hildenborough]
 gi|311235329|gb|ADP88183.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfovibrio vulgaris RCH1]
          Length = 776

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 6/61 (9%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C  C +CE ICP  AI+     R   G  R     +D  +CI CG C  ACP        
Sbjct: 718 CRDCGVCETICPQGAIS-----RRDLGEGRFEM-TVDGERCIGCGFCAGACPCGIWNLVE 771

Query: 123 N 123
           N
Sbjct: 772 N 772


>gi|89073353|ref|ZP_01159877.1| electron transport complex protein RnfB [Photobacterium sp. SKA34]
 gi|89050840|gb|EAR56314.1| electron transport complex protein RnfB [Photobacterium sp. SKA34]
          Length = 194

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 27/78 (34%), Gaps = 10/78 (12%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E+ CI C  C   CP  AI   +             + +   +C  C LC   CP D
Sbjct: 108 FIHEDMCIGCTKCIQACPVDAIVGGTK----------SMHTVIKDECTGCDLCVAPCPTD 157

Query: 117 AIVEGPNFEFATETRQEL 134
            I   P  E     + +L
Sbjct: 158 CIEMIPVKETPDNWKWQL 175


>gi|65318011|ref|ZP_00390970.1| COG3383: Uncharacterized anaerobic dehydrogenase [Bacillus
           anthracis str. A2012]
          Length = 500

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +             R +
Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
                 I+   C+ CG C   CP +A++E
Sbjct: 183 WDHGVSINDSSCVSCGQCVTVCPCNALME 211



 Score = 37.4 bits (85), Expect = 0.70,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 91  RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 151 CIACGQCVEVC 161


>gi|313683607|ref|YP_004061345.1| ferredoxin-like protein [Sulfuricurvum kujiense DSM 16994]
 gi|313156467|gb|ADR35145.1| ferredoxin-like protein [Sulfuricurvum kujiense DSM 16994]
          Length = 361

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 30/92 (32%), Gaps = 11/92 (11%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
                   + C  C  C   CP  A+   S  +                KCI CG+C++ 
Sbjct: 242 FFNKQIDFQTCTNCGECTQFCPTDALFPTSDKQGIY---------FSQGKCIGCGICEDI 292

Query: 113 CPVDAIVEGPNFEFAT--ETRQELYYDKERLL 142
           C   AI     F+  +    R E     E ++
Sbjct: 293 CKPKAIKAKEGFDLVSIAFDRAEQLVHYEMVM 324


>gi|251778577|ref|ZP_04821497.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
 gi|243082892|gb|EES48782.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
          Length = 362

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 12/63 (19%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++ CI C +C+  C   AI I +               ID  KC  CGLC   CP +A+
Sbjct: 310 NQDACIKCGICKTSCVYDAIDISNE------------LIIDSKKCFGCGLCVTRCPKNAL 357

Query: 119 VEG 121
              
Sbjct: 358 SMQ 360


>gi|254520089|ref|ZP_05132145.1| iron hydrogenase 1 [Clostridium sp. 7_2_43FAA]
 gi|226913838|gb|EEH99039.1| iron hydrogenase 1 [Clostridium sp. 7_2_43FAA]
          Length = 575

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 3/69 (4%)

Query: 59  GEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
             E+CI C+ C   C           +               I+   C YCG C   CP 
Sbjct: 146 DREKCILCRRCVTSCNDIQKVHAITVANRGFETNISTFSNDSINETNCTYCGQCVAVCPT 205

Query: 116 DAIVEGPNF 124
            A+ E  ++
Sbjct: 206 GALREKSDY 214


>gi|237808740|ref|YP_002893180.1| putative glutamate synthase (NADPH) small subunit [Tolumonas
           auensis DSM 9187]
 gi|237501001|gb|ACQ93594.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Tolumonas
           auensis DSM 9187]
          Length = 544

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 28/91 (30%), Gaps = 6/91 (6%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRR 92
           +  P E+        G     +      RC +C  C        A   E+  +   G+  
Sbjct: 455 VVTPEER-EGFDEIIGGLTPEQARYEAARCYSCGNCFECDGCYGACPEEAIIKLGKGSG- 512

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
              Y ID  KC  C  C   CP  AI     
Sbjct: 513 ---YRIDYDKCTGCSACYNQCPCHAIEMVSE 540


>gi|209695338|ref|YP_002263267.1| electron transport complex protein RnfB [Aliivibrio salmonicida
           LFI1238]
 gi|226735410|sp|B6EGH6|RNFB_ALISL RecName: Full=Electron transport complex protein rnfB
 gi|208009290|emb|CAQ79556.1| electron transport complex protein RnfB [Aliivibrio salmonicida
           LFI1238]
          Length = 194

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 27/81 (33%), Gaps = 10/81 (12%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
            +S     +   +     E+ CI C  C   CP  AI   +             + +   
Sbjct: 93  PSSAHDEEKSIKKIAFIHEDMCIGCTKCIQACPVDAIVGGTK----------ALHTVIEA 142

Query: 102 KCIYCGLCQEACPVDAIVEGP 122
           +C  C LC   CP D I   P
Sbjct: 143 ECTGCDLCVAPCPTDCIEMIP 163


>gi|184157307|ref|YP_001845646.1| NADH:ubiquinone oxidoreductase subunit RnfB [Acinetobacter
           baumannii ACICU]
 gi|332873434|ref|ZP_08441387.1| electron transport complex, RnfABCDGE type, B subunit
           [Acinetobacter baumannii 6014059]
 gi|183208901|gb|ACC56299.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB
           [Acinetobacter baumannii ACICU]
 gi|322507192|gb|ADX02646.1| RnfB [Acinetobacter baumannii 1656-2]
 gi|323517170|gb|ADX91551.1| NADH:ubiquinone oxidoreductase, subunit RnfB [Acinetobacter
           baumannii TCDC-AB0715]
 gi|332738380|gb|EGJ69254.1| electron transport complex, RnfABCDGE type, B subunit
           [Acinetobacter baumannii 6014059]
          Length = 263

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 28/87 (32%), Gaps = 10/87 (11%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P E      +  G     +    E+ CI C  C   CP  AI               + +
Sbjct: 66  PAETSVWPVQADGRPQRMKAIIREDECIGCTKCINACPVDAIIGSGK----------LMH 115

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPN 123
            I    C  C LC   CPVD I    +
Sbjct: 116 TILTDLCTGCELCIPPCPVDCIDLVED 142


>gi|168212325|ref|ZP_02637950.1| [Fe] hydrogenase [Clostridium perfringens CPE str. F4969]
 gi|170716012|gb|EDT28194.1| [Fe] hydrogenase [Clostridium perfringens CPE str. F4969]
          Length = 696

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 13/88 (14%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              EE+CI C  C+ IC                   ++    D   CI CG C   CP  
Sbjct: 21  CRDEEKCIKCGSCKNICTD---------YIGVNGHYSLEKTNDTAVCINCGQCANVCPTS 71

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNN 144
           +I E  ++    +  Q+   DK++++  
Sbjct: 72  SITEVFDY----KKVQDAISDKDKIVIV 95


>gi|166032538|ref|ZP_02235367.1| hypothetical protein DORFOR_02253 [Dorea formicigenerans ATCC
           27755]
 gi|166026895|gb|EDR45652.1| hypothetical protein DORFOR_02253 [Dorea formicigenerans ATCC
           27755]
          Length = 249

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 31/98 (31%), Gaps = 12/98 (12%)

Query: 25  RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84
           + F   +  +   F  G  +P F             + CI C  C   CP   I +E   
Sbjct: 151 KEFCLPRNNLYDRFMSGPVNPIFYKFFVKANAFQANDSCIGCGQCVKKCPLNNIHLEQER 210

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                        +   KC +C  C   CP +AI  G 
Sbjct: 211 P------------VWGEKCTHCMACICYCPTEAIEYGK 236


>gi|312878981|ref|ZP_07738781.1| molybdopterin oxidoreductase Fe4S4 region [Aminomonas paucivorans
           DSM 12260]
 gi|310782272|gb|EFQ22670.1| molybdopterin oxidoreductase Fe4S4 region [Aminomonas paucivorans
           DSM 12260]
          Length = 365

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 3/71 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRC---HDGTRRTVRYDIDMIKCIYCGLCQE 111
            Y     +CI C  C   C  Q+       +    H      V   ++   C++CG C +
Sbjct: 145 FYVRDMNKCILCGRCVRSCDWQSGYHAIDFQHRGIHTAINPPVGVKLEDSDCVFCGQCVQ 204

Query: 112 ACPVDAIVEGP 122
           ACPV A+VE  
Sbjct: 205 ACPVGALVEKK 215


>gi|292671026|ref|ZP_06604452.1| pyruvate-ferredoxin oxidoreductase [Selenomonas noxia ATCC 43541]
 gi|292647343|gb|EFF65315.1| pyruvate-ferredoxin oxidoreductase [Selenomonas noxia ATCC 43541]
          Length = 1187

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 14/84 (16%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQ------------AITIESGPRCHDGTRRTVRYDID 99
           A+       E+CI C  C  +CP              A   E          + + + I 
Sbjct: 692 AISVPVWRPEKCIQCNQCSFVCPHATIRPILTTDEELAAAPEGFQSVKSRPAKGLNFTIA 751

Query: 100 MI--KCIYCGLCQEACPVDAIVEG 121
           +    C+ CG C + CP  A+   
Sbjct: 752 VSTLDCLGCGNCAQVCPGKALDMT 775


>gi|238792133|ref|ZP_04635768.1| Electron transport complex protein rnfC [Yersinia intermedia ATCC
           29909]
 gi|238728370|gb|EEQ19889.1| Electron transport complex protein rnfC [Yersinia intermedia ATCC
           29909]
          Length = 545

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           + CI C LC   CPA  +  +       G       + ++  CI CG C   CP
Sbjct: 342 QSCIRCGLCVDACPAG-LLPQQLYWFSRGEEHEKARNHNLFDCIECGACAYVCP 394


>gi|238762650|ref|ZP_04623620.1| Electron transport complex protein rnfC [Yersinia kristensenii ATCC
           33638]
 gi|238699295|gb|EEP92042.1| Electron transport complex protein rnfC [Yersinia kristensenii ATCC
           33638]
          Length = 537

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           + CI C LC   CPA  +  +       G       + ++  CI CG C   CP
Sbjct: 342 QSCIRCGLCVDACPAG-LLPQQLYWFSRGEEHEKARNHNLFDCIECGACAYVCP 394


>gi|291285962|ref|YP_003502778.1| NADH dehydrogenase (quinone) [Denitrovibrio acetiphilus DSM 12809]
 gi|290883122|gb|ADD66822.1| NADH dehydrogenase (quinone) [Denitrovibrio acetiphilus DSM 12809]
          Length = 597

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 37/97 (38%), Gaps = 15/97 (15%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
             ++Y F+ +   +   +K       R    L  +    ERC  C LC+  CP  AIT E
Sbjct: 515 TTIKY-FRHEYEAHIKDKKCPA----RECAELIEFVVVNERCKKCGLCKKACPVDAITWE 569

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                           ID  KC+ C  C   CP +AI
Sbjct: 570 KKQFAV----------IDNEKCVKCRECIVNCPFNAI 596



 Score = 39.3 bits (90), Expect = 0.16,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 21/51 (41%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           +         I+            + + +   +C  CGLC++ACPVDAI  
Sbjct: 518 KYFRHEYEAHIKDKKCPARECAELIEFVVVNERCKKCGLCKKACPVDAITW 568


>gi|226324705|ref|ZP_03800223.1| hypothetical protein COPCOM_02491 [Coprococcus comes ATCC 27758]
 gi|225207153|gb|EEG89507.1| hypothetical protein COPCOM_02491 [Coprococcus comes ATCC 27758]
          Length = 263

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 29/83 (34%), Gaps = 11/83 (13%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P+E+         +            CI CK+CE +C + A+ +               
Sbjct: 191 VPYEQKHLVQCSSKDKGKDVMSVCSVGCIGCKMCEKVCESDAVHVVDNIAH--------- 241

Query: 96  YDIDMIKCIYCGLCQEACPVDAI 118
             ID  KC  CG C E CP   I
Sbjct: 242 --IDPEKCTNCGKCAEKCPKKII 262



 Score = 33.5 bits (75), Expect = 9.1,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCH-----DGTRRTVRYDIDMIKCIYCGLCQEAC 113
            +E C AC  C A CP   I +    + H        +      +  + CI C +C++ C
Sbjct: 169 DKEACKACGKCIATCPKHLIELVPYEQKHLVQCSSKDKGKDVMSVCSVGCIGCKMCEKVC 228

Query: 114 PVDAIVEGPN 123
             DA+    N
Sbjct: 229 ESDAVHVVDN 238


>gi|170701515|ref|ZP_02892467.1| dihydroorotate dehydrogenase family protein [Burkholderia ambifaria
           IOP40-10]
 gi|170133572|gb|EDT01948.1| dihydroorotate dehydrogenase family protein [Burkholderia ambifaria
           IOP40-10]
          Length = 435

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 6/63 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117
            ++RCI C LC   C   +    +  +          +++   +C+ C LC   CPV   
Sbjct: 341 DQDRCIQCGLCHIACEDTSHQAITAEKDGV-----RHFEVVDAECVGCNLCMHVCPVEQC 395

Query: 118 IVE 120
           I  
Sbjct: 396 ITM 398


>gi|153837836|ref|ZP_01990503.1| formate dehydrogenase, alpha subunit [Vibrio parahaemolyticus
           AQ3810]
 gi|149748778|gb|EDM59621.1| formate dehydrogenase, alpha subunit [Vibrio parahaemolyticus
           AQ3810]
          Length = 1422

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 19/84 (22%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM------------------ 100
              RCI+C  C   C  QA+            R  +R D                     
Sbjct: 636 DANRCISCGQCIQACREQAVHGVLSFVSDKNGRPALRPDDRPRFRSDEKGVGCSGLTLMG 695

Query: 101 -IKCIYCGLCQEACPVDAIVEGPN 123
             KC+ CG+C +ACP  A+V+  +
Sbjct: 696 DSKCVQCGVCVQACPTGAMVDSRD 719



 Score = 33.9 bits (76), Expect = 6.6,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 4/72 (5%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P ++       +G         G+ +C+ C +C   CP  A+            +     
Sbjct: 673 PDDRPRFRSDEKGVGCSGLTLMGDSKCVQCGVCVQACPTGAMVDSRDRSQGRTEQLKAVD 732

Query: 97  DIDMIKCIYCGL 108
            I    C YCG+
Sbjct: 733 TI----CTYCGV 740


>gi|56552709|ref|YP_163548.1| RnfABCDGE type eelectron transport complex subunit B [Zymomonas
           mobilis subsp. mobilis ZM4]
 gi|241762603|ref|ZP_04760676.1| electron transport complex, RnfABCDGE type, B subunit [Zymomonas
           mobilis subsp. mobilis ATCC 10988]
 gi|260753651|ref|YP_003226544.1| electron transport complex, RnfABCDGE type subunit beta [Zymomonas
           mobilis subsp. mobilis NCIMB 11163]
 gi|56544283|gb|AAV90437.1| electron transport complex, RnfABCDGE type, B subunit [Zymomonas
           mobilis subsp. mobilis ZM4]
 gi|241372798|gb|EER62502.1| electron transport complex, RnfABCDGE type, B subunit [Zymomonas
           mobilis subsp. mobilis ATCC 10988]
 gi|258553014|gb|ACV75960.1| electron transport complex, RnfABCDGE type, B subunit [Zymomonas
           mobilis subsp. mobilis NCIMB 11163]
          Length = 220

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ CI C  C   C + AI   +             + I    C  C  C+ ACP  AI
Sbjct: 106 HEDLCIGCTACIRDCSSDAIIGAARQ----------VHTIIPDVCHGCSKCETACPTGAI 155

Query: 119 VEGP 122
              P
Sbjct: 156 EMVP 159


>gi|325265960|ref|ZP_08132646.1| electron transport complex protein RnfB [Kingella denitrificans
           ATCC 33394]
 gi|324982598|gb|EGC18224.1| electron transport complex protein RnfB [Kingella denitrificans
           ATCC 33394]
          Length = 284

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 10/66 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C  C   CP  AI   S           + + +   +C  CGLC   CPVD
Sbjct: 74  YIDEAVCIGCTACIRACPVDAIMGASK----------LMHTVLADECTGCGLCVPPCPVD 123

Query: 117 AIVEGP 122
            I   P
Sbjct: 124 CIDLLP 129



 Score = 37.4 bits (85), Expect = 0.71,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 16/35 (45%)

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
                  + V   ID   CI C  C  ACPVDAI+
Sbjct: 62  EHAAPPHQNVVAYIDEAVCIGCTACIRACPVDAIM 96


>gi|323977659|gb|EGB72745.1| dihydroorotate dehydrogenase [Escherichia coli TW10509]
          Length = 411

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +       ++C+ C  C   C         G +  + + +T     +  K
Sbjct: 324 VPAEDLDRSYIVYPNINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 378 CVGCLLCGHVCPVGCIDLG 396


>gi|303256259|ref|ZP_07342275.1| ferredoxin hydrogenase [Burkholderiales bacterium 1_1_47]
 gi|302860988|gb|EFL84063.1| ferredoxin hydrogenase [Burkholderiales bacterium 1_1_47]
          Length = 450

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 26/73 (35%), Gaps = 10/73 (13%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
            FR           ++ C+ C  C   CP  AI+   G            + I    C+ 
Sbjct: 26  NFRKGELRGIIHINKDNCVGCDTCRKFCPVDAISGGLG----------AIHKIRDDACVS 75

Query: 106 CGLCQEACPVDAI 118
           CG C  ACP  AI
Sbjct: 76  CGQCLSACPFGAI 88


>gi|300310950|ref|YP_003775042.1| ferredoxin [4Fe-4S]-type protein [Herbaspirillum seropedicae SmR1]
 gi|300073735|gb|ADJ63134.1| ferredoxin [4Fe-4S]-type protein [Herbaspirillum seropedicae SmR1]
          Length = 240

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 26/79 (32%), Gaps = 10/79 (12%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
             +P    E   R     E  CI C LC   CP  AI   +             + +   
Sbjct: 71  PLNPEHGSEQPRRLAVIDEAVCIGCTLCIQACPVDAIAGAAKQ----------MHTVIDA 120

Query: 102 KCIYCGLCQEACPVDAIVE 120
            C  C LC   CPVD I  
Sbjct: 121 LCTGCDLCVAPCPVDCISM 139


>gi|167947037|ref|ZP_02534111.1| putative glutamate synthase (NADPH) small subunit [Endoriftia
           persephone 'Hot96_1+Hot96_2']
          Length = 379

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           +RC++C  C   C     +   G     G  +  RYD    +C  C +C E CP  AI  
Sbjct: 307 QRCLSCGNCFE-CDGCLGSCPEGAVIKLGPGKRYRYD--YSRCTGCAVCYEQCPCHAIEM 363

Query: 121 GPN 123
            P 
Sbjct: 364 VPE 366


>gi|167750547|ref|ZP_02422674.1| hypothetical protein EUBSIR_01523 [Eubacterium siraeum DSM 15702]
 gi|167656473|gb|EDS00603.1| hypothetical protein EUBSIR_01523 [Eubacterium siraeum DSM 15702]
          Length = 495

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 25/71 (35%), Gaps = 9/71 (12%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDG---------TRRTVRYDIDMIKCIYCG 107
              + +C+ C  C  +CP  AI     P                 +    ID  KCI CG
Sbjct: 133 HIDKSKCVNCGQCAKVCPYGAILEFKRPCERACKIGAISRATDTSSAAAHIDNDKCISCG 192

Query: 108 LCQEACPVDAI 118
            C   CP  AI
Sbjct: 193 ACVYTCPFGAI 203



 Score = 42.8 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 12/64 (18%)

Query: 57  PNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            +  E C  C    CE +C   AIT +   + H          ID  KC+ CG C + CP
Sbjct: 101 YDVTEACRGCIAHRCEDVCRMGAITFDEHQKAH----------IDKSKCVNCGQCAKVCP 150

Query: 115 VDAI 118
             AI
Sbjct: 151 YGAI 154


>gi|319428322|gb|ADV56396.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella putrefaciens 200]
          Length = 553

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 30/82 (36%), Gaps = 9/82 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E+C  C  C AICP  ++                        C+ CGLC+ ACP   I
Sbjct: 419 NVEKCTLCMSCVAICPTMSLQDGGDKPALH---------FIEQNCVQCGLCEAACPEKVI 469

Query: 119 VEGPNFEFATETRQELYYDKER 140
              P   F    RQ+ +  KE 
Sbjct: 470 SLTPQINFDKAARQQQHTLKEE 491



 Score = 38.9 bits (89), Expect = 0.24,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 11/53 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C   CPA AI+  +              +ID   C   G C  ACP  AI
Sbjct: 195 CNRCLNFCPADAISSVAKK-----------IEIDPYLCHGAGSCTSACPTGAI 236


>gi|57234357|ref|YP_181590.1| hydrogenase subunit HymB, putative [Dehalococcoides ethenogenes
           195]
 gi|57224805|gb|AAW39862.1| hydrogenase subunit HymB, putative [Dehalococcoides ethenogenes
           195]
          Length = 640

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 10/64 (15%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            AL  +    ++C AC +C   CP  AI    G          + + I+  KCI CG C 
Sbjct: 557 KALLTFYIDPDKCKACMICARNCPTDAIKGGKG----------LIHTIEQDKCIKCGACL 606

Query: 111 EACP 114
           + CP
Sbjct: 607 DTCP 610



 Score = 37.4 bits (85), Expect = 0.63,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 20/53 (37%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           +         I++        +  + + ID  KC  C +C   CP DAI  G 
Sbjct: 536 KYFRHEYIDHIKNKHCEAGVCKALLTFYIDPDKCKACMICARNCPTDAIKGGK 588


>gi|85713243|ref|ZP_01044269.1| electron transport complex protein RnfB [Idiomarina baltica OS145]
 gi|85692938|gb|EAQ30910.1| electron transport complex protein RnfB [Idiomarina baltica OS145]
          Length = 194

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 27/85 (31%), Gaps = 10/85 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E          E   +     E+ CI C  C   CP  AI   +             + +
Sbjct: 90  EAKPLDAAHGEESVKKVAIIREDECIGCTKCIQACPVDAILGAAKQ----------MHTV 139

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPN 123
              +C  C LC E CPVD I     
Sbjct: 140 IEHECTGCDLCVEPCPVDCIDMVEI 164


>gi|120600652|ref|YP_965226.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella sp. W3-18-1]
 gi|120560745|gb|ABM26672.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           sp. W3-18-1]
          Length = 553

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 30/82 (36%), Gaps = 9/82 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E+C  C  C AICP  ++                        C+ CGLC+ ACP   I
Sbjct: 419 NVEKCTLCMSCVAICPTMSLQDGGDKPALH---------FIEQNCVQCGLCEAACPEKVI 469

Query: 119 VEGPNFEFATETRQELYYDKER 140
              P   F    RQ+ +  KE 
Sbjct: 470 SLTPQINFDKAARQQQHTLKEE 491



 Score = 38.9 bits (89), Expect = 0.24,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 11/53 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C   CPA AI+  +              +ID   C   G C  ACP  AI
Sbjct: 195 CNRCLNFCPADAISSVAKK-----------IEIDPYLCHGAGSCTSACPTGAI 236


>gi|296399274|gb|ADH10449.1| NADH-plastoquinone oxidoreductase subunit I [Selaginella
           moellendorffii]
          Length = 189

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 5/116 (4%)

Query: 18  GAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA 77
             F +   +  +   TI YP++K   S RFRG              IA +    + P   
Sbjct: 25  RGFTVTPDHMDRLPITIQYPYDKSIPSERFRGRTHFESDKR-----IAREARVRVRPTNL 79

Query: 78  ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
             ++ G       +R+  +  D     + G   E  P +       +E +T  R E
Sbjct: 80  PVVDWGLGEGMRRKRSRSHSTDPGVRTFRGNRAEYRPTNRSPMTGEYEPSTYDRHE 135


>gi|327398530|ref|YP_004339399.1| glycyl-radical enzyme activating protein family [Hippea maritima
           DSM 10411]
 gi|327181159|gb|AEA33340.1| glycyl-radical enzyme activating protein family [Hippea maritima
           DSM 10411]
          Length = 298

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 11/77 (14%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ++CI C  C+A+C   AI+  +              +I+  +C  CG C ++CP +A+  
Sbjct: 52  QKCIRCLTCKAVCKEDAISFTNNK-----------IEINTKRCTMCGKCWQSCPTNALEV 100

Query: 121 GPNFEFATETRQELYYD 137
              +    E  +EL  D
Sbjct: 101 VGQYYKTDELIEELTKD 117


>gi|323698052|ref|ZP_08109964.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfovibrio sp.
           ND132]
 gi|323457984|gb|EGB13849.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfovibrio
           desulfuricans ND132]
          Length = 1168

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 30/94 (31%), Gaps = 19/94 (20%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------- 92
           RG   L      +E CI C  C  +CP  A+                             
Sbjct: 672 RGVAILVPEWI-KENCIQCNQCAFVCPHSALRAVLATDDEMKKAPATYETIDAVGKDLKG 730

Query: 93  -TVRYDIDMIKCIYCGLCQEACP--VDAIVEGPN 123
              R  ++ + C+ CG C + CP    A+V  P 
Sbjct: 731 LHFRLQVNSLDCLGCGNCADICPAKEKALVMKPI 764


>gi|313619884|gb|EFR91446.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Listeria innocua
           FSL S4-378]
          Length = 837

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 34/104 (32%), Gaps = 16/104 (15%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCH 87
              T+   +   AL       E C  C  C  +CP  AI              E      
Sbjct: 290 PPGTAAYEKRGIALEVPEWISENCTMCNECAFVCPHAAIRPILTNEEEMESAPEGFMTRE 349

Query: 88  DGTRRTVRYDID--MIKCIYCGLCQEACPV--DAIVEGPNFEFA 127
              +  +RY I    + C  C LC E CP    A+V  P  E A
Sbjct: 350 MRGKDGLRYRIQVSPMDCTGCNLCAETCPAKDKALVMKPFEEVA 393



 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 5/80 (6%)

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV--EGPNFEFATETRQ 132
           + A    +      G    V   I    C  C  C   CP  AI        E   E+  
Sbjct: 286 SGAYPPGTAAYEKRGIALEVPEWIS-ENCTMCNECAFVCPHAAIRPILTNEEEM--ESAP 342

Query: 133 ELYYDKERLLNNGDRWESEI 152
           E +  +E    +G R+  ++
Sbjct: 343 EGFMTREMRGKDGLRYRIQV 362


>gi|310658216|ref|YP_003935937.1| iron-only hydrogenase catalytic subunit [Clostridium sticklandii
           DSM 519]
 gi|308824994|emb|CBH21032.1| putative catalytic subunit of iron-only hydrogenase ([Fe]
           hydrogenase) [Clostridium sticklandii]
          Length = 577

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

Query: 59  GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQEACPV 115
             ++CI C+ CE +C   Q + + S       T     +D  I    C +CG C   CP 
Sbjct: 147 NMDKCILCRRCETVCNEVQTVNVLSAVGRGFDTVVGTAFDLPIHETTCTFCGQCLAVCPT 206

Query: 116 DAIVEGPN 123
            A+ E  N
Sbjct: 207 AALTEVNN 214


>gi|266623377|ref|ZP_06116312.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium
           hathewayi DSM 13479]
 gi|288864843|gb|EFC97141.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium
           hathewayi DSM 13479]
          Length = 903

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 15/81 (18%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQ-----AITIESGPRCHDGTR---------RT 93
           RG        N  + CI C  C  +CP       A+T E      +G +           
Sbjct: 680 RGIAVNIPAWN-PDNCIQCNFCSYVCPHAVIRPVAMTAEEAANAPEGMKMLDMTGMPGYK 738

Query: 94  VRYDIDMIKCIYCGLCQEACP 114
               +  + C  CG C   CP
Sbjct: 739 FAITVSALDCTGCGSCANVCP 759


>gi|255961347|ref|YP_003097529.1| NADH dehydrogenase subunit I [Selaginella moellendorffii]
 gi|302824513|ref|XP_002993899.1| hypothetical protein SELMODRAFT_137743 [Selaginella moellendorffii]
 gi|254941519|gb|ACT89034.1| NADH dehydrogenase subunit I [Selaginella moellendorffii]
 gi|300138266|gb|EFJ05040.1| hypothetical protein SELMODRAFT_137743 [Selaginella moellendorffii]
          Length = 185

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 5/116 (4%)

Query: 18  GAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA 77
             F +   +  +   TI YP++K   S RFRG              IA +    + P   
Sbjct: 21  RGFTVTPDHMDRLPITIQYPYDKSIPSERFRGRTHFESDKR-----IAREARVRVRPTNL 75

Query: 78  ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
             ++ G       +R+  +  D     + G   E  P +       +E +T  R E
Sbjct: 76  PVVDWGLGEGMRRKRSRSHSTDPGVRTFRGNRAEYRPTNRSPMTGEYEPSTYDRHE 131


>gi|237722430|ref|ZP_04552911.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|298481910|ref|ZP_07000099.1| hydrogenase HymB subunit [Bacteroides sp. D22]
 gi|229448240|gb|EEO54031.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|298271774|gb|EFI13346.1| hydrogenase HymB subunit [Bacteroides sp. D22]
          Length = 635

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 10/66 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L  Y    ERCI C LC   CPA AI+                + I   KCI CG+C   
Sbjct: 577 LLTYTISPERCIGCHLCAKNCPADAISGL----------VRKPHVIAPDKCIKCGMCMAR 626

Query: 113 CPVDAI 118
           C  +AI
Sbjct: 627 CKFNAI 632


>gi|270308335|ref|YP_003330393.1| glutamate synthase-like protein, gltB-like fragment
           [Dehalococcoides sp. VS]
 gi|270154227|gb|ACZ62065.1| glutamate synthase-like protein, gltB-like fragment
           [Dehalococcoides sp. VS]
          Length = 500

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 12/89 (13%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           +RCI CK+C   C       +             +  +    C+ C  C   CP +A+V 
Sbjct: 16  DRCIKCKVCITQCSFDTHYYDEDDD---------QIKVRNQNCVGCHRCVTFCPTNALVV 66

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWE 149
             N     E RQ   +  E + +   + E
Sbjct: 67  RNN---PLEYRQNANWTPEMIEDIFKQAE 92


>gi|160887581|ref|ZP_02068584.1| hypothetical protein BACOVA_05603 [Bacteroides ovatus ATCC 8483]
 gi|156107992|gb|EDO09737.1| hypothetical protein BACOVA_05603 [Bacteroides ovatus ATCC 8483]
          Length = 635

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 10/66 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L  Y    ERCI C LC   CPA AI+                + I   KCI CG+C   
Sbjct: 577 LLTYTISPERCIGCHLCAKNCPADAISGL----------VRKPHVIAPDKCIKCGMCMAR 626

Query: 113 CPVDAI 118
           C  +AI
Sbjct: 627 CKFNAI 632


>gi|116695680|ref|YP_841256.1| sulfite reductase alpha subunit (flavoprotein) [Ralstonia eutropha
           H16]
 gi|113530179|emb|CAJ96526.1| sulfite reductase alpha subunit (flavoprotein) [Ralstonia eutropha
           H16]
          Length = 383

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 11/68 (16%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           + ++      CI C  CE  CP  AIT +              Y +D+ +C +C  C   
Sbjct: 9   ITQHLIDPAICIRCNSCEESCPVGAITHDHN-----------NYVVDVERCNHCRACLPP 57

Query: 113 CPVDAIVE 120
           CP  AI  
Sbjct: 58  CPTGAINH 65



 Score = 39.3 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPN 123
           ID   CI C  C+E+CPV AI    N
Sbjct: 14  IDPAICIRCNSCEESCPVGAITHDHN 39


>gi|94986722|ref|YP_594655.1| pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin
           oxidoreductases, gamma subunit [Lawsonia intracellularis
           PHE/MN1-00]
 gi|94730971|emb|CAJ54334.1| Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin
           oxidoreductases, gamma subunit [Lawsonia intracellularis
           PHE/MN1-00]
          Length = 1187

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/127 (15%), Positives = 33/127 (25%), Gaps = 20/127 (15%)

Query: 31  KTTINYPF--EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI-------- 80
             +   P       T+   +   A+       + CI C  C  +CP   I          
Sbjct: 658 PVSSFTPDGIVPLGTAAYEKRAIAIDIPEWIADNCIQCFQCSYVCPHACIRPVLATEEEL 717

Query: 81  --------ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
                          +     +R  +    C+ CG C + CP                RQ
Sbjct: 718 IGAPETFVTKDAIGKELKGLKMRIQVYPEDCVGCGSCADVCPSKPKSL--IMMPLETQRQ 775

Query: 133 ELYYDKE 139
           E   + +
Sbjct: 776 EQVINLD 782


>gi|57234074|ref|YP_181843.1| glutamate synthase, alpha subunit, putative [Dehalococcoides
           ethenogenes 195]
 gi|57224522|gb|AAW39579.1| glutamate synthase, alpha subunit, putative [Dehalococcoides
           ethenogenes 195]
          Length = 500

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 12/89 (13%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           +RCI CK+C   C       +             +  +    C+ C  C   CP +A+V 
Sbjct: 16  DRCIKCKVCITQCSFDTHYYDEDDD---------QIKVRNQNCVGCHRCVTFCPTNALVV 66

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWE 149
             N     E RQ   +  E + +   + E
Sbjct: 67  RNN---PLEYRQNANWTPEMIEDIFKQAE 92


>gi|333004461|gb|EGK23991.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Shigella flexneri
           VA-6]
          Length = 1174

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 32/138 (23%), Gaps = 24/138 (17%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPVDA 117
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 118 IVEGPNFEFATETRQELY 135
                       +RQE  
Sbjct: 760 RQNPEIKAINMMSRQEHV 777


>gi|330684502|gb|EGG96218.1| molybdopterin oxidoreductase Fe4S4 domain protein [Staphylococcus
           epidermidis VCU121]
          Length = 578

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 3/78 (3%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQE 111
            Y     +CI C  C   C    +             R +  +   I+   C+ CG C  
Sbjct: 139 FYRYDPNQCILCGRCVEACQDIEVNETISIDWDREHPRVIWDNDVPINESSCVSCGQCAT 198

Query: 112 ACPVDAIVEGPNFEFATE 129
            CP +A++E      A  
Sbjct: 199 VCPCNAMMEVNMEGNAGY 216



 Score = 38.9 bits (89), Expect = 0.20,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 16/68 (23%), Gaps = 8/68 (11%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105
           R        C  C      CE                             Y  D  +CI 
Sbjct: 90  RILEKHMLYCTVCDYNNGDCEIHNTMDEWGLQHQTYEYKEKPYEKDYGPFYRYDPNQCIL 149

Query: 106 CGLCQEAC 113
           CG C EAC
Sbjct: 150 CGRCVEAC 157


>gi|307298014|ref|ZP_07577818.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306916100|gb|EFN46483.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 1176

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 31/124 (25%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAIT---------------IESGPRCHDGTRR 92
           RG   L       + CI C  C  +CP  AI                 ES       +  
Sbjct: 676 RGIAVLIPEWQ-PDNCIQCNQCSLVCPHAAIRPFLINEEEEKKAPVAFESIKALGGKSFE 734

Query: 93  TVRYDID--MIKCIYCGLCQEAC--PVDAIVE----------GPNFEFATE-TRQELYYD 137
            ++Y I    + C  CG C + C  P +A++            PN+EF+T  + ++   +
Sbjct: 735 GLKYRIQVSPLDCTGCGNCADICPAPKNALLMKPLESQVEKEVPNWEFSTTISEKKDVMN 794

Query: 138 KERL 141
            E L
Sbjct: 795 VETL 798


>gi|326790115|ref|YP_004307936.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Clostridium
           lentocellum DSM 5427]
 gi|326540879|gb|ADZ82738.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Clostridium
           lentocellum DSM 5427]
          Length = 1175

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 28/90 (31%), Gaps = 18/90 (20%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITI----ESGPRCHDGTRRTV------------ 94
            A+       E CI C  C  +CP   I      E       GT  T             
Sbjct: 677 IAIEVPEWEIENCIQCNQCSFVCPHACIRPVLLTEEEQAKAPGTFATKKAIGKGLEGLTY 736

Query: 95  RYDIDMIKCIYCGLCQEACP--VDAIVEGP 122
           R  +    C  CG C + CP    A+V  P
Sbjct: 737 RIQVSPYDCTGCGNCADICPAKTKALVMKP 766


>gi|294495379|ref|YP_003541872.1| nitrite and sulphite reductase 4Fe-4S region [Methanohalophilus
           mahii DSM 5219]
 gi|292666378|gb|ADE36227.1| nitrite and sulphite reductase 4Fe-4S region [Methanohalophilus
           mahii DSM 5219]
          Length = 286

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 30/95 (31%), Gaps = 12/95 (12%)

Query: 28  FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH 87
           FK   T             F     L       ++C  C LCE  CP  AI IE+     
Sbjct: 135 FKFAVTGCPSSCMKPQENDFGIMGGLEPEWID-DKCTRCGLCETTCPVDAIKIEND---- 189

Query: 88  DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                      D  KC  CG C   CP  A +E  
Sbjct: 190 -------TLYFDEEKCNLCGDCVFVCPTSAWIEVK 217



 Score = 37.8 bits (86), Expect = 0.49,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           CP+  +  +       G       D    KC  CGLC+  CPVDAI    +
Sbjct: 142 CPSSCMKPQENDFGIMGGLEPEWID---DKCTRCGLCETTCPVDAIKIEND 189


>gi|258404551|ref|YP_003197293.1| response regulator receiver protein [Desulfohalobium retbaense DSM
           5692]
 gi|257796778|gb|ACV67715.1| response regulator receiver protein [Desulfohalobium retbaense DSM
           5692]
          Length = 1142

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 7/69 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR-------YDIDMIKCIYCGLCQE 111
              +CI+C  C  +CP +     +                    Y +D+  C  C  C E
Sbjct: 114 DAHKCISCGQCSTVCPVRIPDTFNAGLGERAAIYLPVPHNIPNQYVVDLAHCTRCWKCAE 173

Query: 112 ACPVDAIVE 120
           ACP  A+  
Sbjct: 174 ACPTGAVDF 182



 Score = 41.6 bits (96), Expect = 0.037,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 9/58 (15%)

Query: 60   EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
               C  C+ C  +CP  A +++             +  +D I C  CG C   CP  A
Sbjct: 1071 HSLCSLCQACVNVCPYGARSLDWE---------NEQIVVDEILCQGCGACTAVCPNSA 1119


>gi|168236356|ref|ZP_02661414.1| dihydroorotate dehydrogenase family protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|197290436|gb|EDY29791.1| dihydroorotate dehydrogenase family protein [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
          Length = 411

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 24/79 (30%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +      +E+C+ C  C   C         G +       +     +  K
Sbjct: 324 IPAEDLDRSYIVYPQINQEKCVGCGRCYISCYDG------GHQAMGWDEHSRTPHCNTEK 377

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 378 CVGCLLCGHVCPVACIDLG 396


>gi|160876722|ref|YP_001556038.1| formate dehydrogenase subunit alpha [Shewanella baltica OS195]
 gi|160862244|gb|ABX50778.1| formate dehydrogenase, alpha subunit [Shewanella baltica OS195]
 gi|315268922|gb|ADT95775.1| formate dehydrogenase, alpha subunit [Shewanella baltica OS678]
          Length = 1421

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 24/75 (32%), Gaps = 15/75 (20%)

Query: 59  GEERCIACKLCEAICPAQAITI---------------ESGPRCHDGTRRTVRYDIDMIKC 103
              RCI+C  C  +C  Q+                   S        R      +   KC
Sbjct: 643 DANRCISCGKCVDVCQLQSGHCAIQFAHDSYQALPQDISETIERRAPRVGFSASMADSKC 702

Query: 104 IYCGLCQEACPVDAI 118
           + CG C + CP  A+
Sbjct: 703 VQCGNCVQVCPTGAL 717



 Score = 34.3 bits (77), Expect = 5.1,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 5/50 (10%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL-C 109
            +C+ C  C  +CP  A+      R  D T       I    C YCG+ C
Sbjct: 700 SKCVQCGNCVQVCPTGALVDARDKRQGDETPLKTASTI----CTYCGVGC 745


>gi|110805757|ref|YP_689277.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 5 str.
           8401]
 gi|110615305|gb|ABF03972.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 5 str.
           8401]
          Length = 1174

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 32/138 (23%), Gaps = 24/138 (17%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPVDA 117
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 118 IVEGPNFEFATETRQELY 135
                       +RQE  
Sbjct: 760 RQNPEIKAINMMSRQEHV 777


>gi|24113170|ref|NP_707680.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 2a str.
           301]
 gi|30062869|ref|NP_837040.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 2a str.
           2457T]
 gi|24052159|gb|AAN43387.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 2a str.
           301]
 gi|30041117|gb|AAP16847.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 2a str.
           2457T]
 gi|281601226|gb|ADA74210.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 2002017]
 gi|313650586|gb|EFS14989.1| pyruvate:ferredoxin oxidoreductase [Shigella flexneri 2a str.
           2457T]
 gi|332757689|gb|EGJ88020.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Shigella flexneri
           4343-70]
 gi|332767619|gb|EGJ97812.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Shigella flexneri
           2930-71]
 gi|333004774|gb|EGK24296.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Shigella flexneri
           K-218]
 gi|333018639|gb|EGK37933.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Shigella flexneri
           K-304]
          Length = 1174

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 32/138 (23%), Gaps = 24/138 (17%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPVDA 117
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 118 IVEGPNFEFATETRQELY 135
                       +RQE  
Sbjct: 760 RQNPEIKAINMMSRQEHV 777


>gi|332534028|ref|ZP_08409877.1| electron transport complex protein RnfC [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332036465|gb|EGI72933.1| electron transport complex protein RnfC [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 606

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 2/92 (2%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C  C   CPA  +  +               + ++  CI CG C   CP   I    
Sbjct: 377 CIRCSACADACPAS-LLPQQLQWFAKSKEYDKLQEHNLFDCIECGACAYVCP-SEIPLVQ 434

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVR 154
            +  A    +E   DK +     +R+++   R
Sbjct: 435 YYRIAKVEIKEQQADKIKADRAKERFDARKER 466


>gi|331000390|ref|ZP_08324069.1| hydrogenase, Fe-only [Parasutterella excrementihominis YIT 11859]
 gi|329571980|gb|EGG53652.1| hydrogenase, Fe-only [Parasutterella excrementihominis YIT 11859]
          Length = 447

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 26/73 (35%), Gaps = 10/73 (13%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
            FR           ++ C+ C  C   CP  AI+   G            + I    C+ 
Sbjct: 23  NFRKGELRGIIHINKDNCVGCDTCRKFCPVDAISGGLG----------AIHKIRDDACVS 72

Query: 106 CGLCQEACPVDAI 118
           CG C  ACP  AI
Sbjct: 73  CGQCLSACPFGAI 85


>gi|304382390|ref|ZP_07364890.1| ferredoxin [Prevotella marshii DSM 16973]
 gi|304336452|gb|EFM02688.1| ferredoxin [Prevotella marshii DSM 16973]
          Length = 259

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 34/94 (36%), Gaps = 13/94 (13%)

Query: 47  FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
            R     R +    ERCI C  C  +CP Q IT   G +                 CI C
Sbjct: 179 IRNALTDRPFRVNNERCIRCGRCATVCPMQNITGGKGEKPIW---------HHTDDCISC 229

Query: 107 GLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140
             C   CPV AI  G      T  + + YY ++ 
Sbjct: 230 FACYHGCPVHAIDYGHR----TRKKGQYYYGRKD 259


>gi|291530234|emb|CBK95819.1| Iron only hydrogenase large subunit, C-terminal domain [Eubacterium
           siraeum 70/3]
 gi|291557046|emb|CBL34163.1| Iron only hydrogenase large subunit, C-terminal domain [Eubacterium
           siraeum V10Sc8a]
          Length = 495

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 25/71 (35%), Gaps = 9/71 (12%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDG---------TRRTVRYDIDMIKCIYCG 107
              + +C+ C  C  +CP  AI     P                 +    ID  KCI CG
Sbjct: 133 HIDKSKCVNCGQCAKVCPYGAILEFKRPCERACKIGAISRATDTSSAAAHIDNDKCISCG 192

Query: 108 LCQEACPVDAI 118
            C   CP  AI
Sbjct: 193 ACVYTCPFGAI 203



 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 12/64 (18%)

Query: 57  PNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            +  E C  C    CE +C   AIT +   + H          ID  KC+ CG C + CP
Sbjct: 101 YDVTEACRGCIAHRCEDVCRMGAITFDEHQKAH----------IDKSKCVNCGQCAKVCP 150

Query: 115 VDAI 118
             AI
Sbjct: 151 YGAI 154


>gi|226195339|ref|ZP_03790928.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           pseudomallei Pakistan 9]
 gi|225932541|gb|EEH28539.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           pseudomallei Pakistan 9]
          Length = 189

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 26/81 (32%), Gaps = 10/81 (12%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
             +     E A       E+ CI C LC   CP  AI                 + I   
Sbjct: 66  PLNQAHGVERARPVAFIDEQLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVAE 115

Query: 102 KCIYCGLCQEACPVDAIVEGP 122
            C  C LC   CPVD I   P
Sbjct: 116 LCTGCDLCVPPCPVDCIAMIP 136


>gi|170756783|ref|YP_001782925.1| [Fe] hydrogenase [Clostridium botulinum B1 str. Okra]
 gi|169121995|gb|ACA45831.1| [Fe] hydrogenase [Clostridium botulinum B1 str. Okra]
          Length = 497

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 7/69 (10%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIKCIYCGLC 109
              + +C  C LC+ +CP  AI     P                 R  I+   CI CG C
Sbjct: 135 YIDQNKCRECGLCKKVCPYNAIVEVMRPCKKVCPTGALEINPDDKRAMIEKENCINCGAC 194

Query: 110 QEACPVDAI 118
             +CP  AI
Sbjct: 195 MASCPFGAI 203


>gi|204929087|ref|ZP_03220230.1| dihydroorotate dehydrogenase family protein [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|204321631|gb|EDZ06830.1| dihydroorotate dehydrogenase family protein [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
          Length = 411

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +      +E+C+ C  C   C         G +  +    +     +  K
Sbjct: 324 IPAEDLDRSYIVYPRINQEKCVGCGRCYISCYDG------GHQAMEWDEHSRTPHCNTEK 377

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 378 CVGCLLCGHVCPVACIDLG 396


>gi|167918137|ref|ZP_02505228.1| ferredoxin [Burkholderia pseudomallei BCC215]
          Length = 176

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 26/81 (32%), Gaps = 10/81 (12%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
             +     E A       E+ CI C LC   CP  AI                 + I   
Sbjct: 66  PLNQAHGVERARPVAFIDEQLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVAE 115

Query: 102 KCIYCGLCQEACPVDAIVEGP 122
            C  C LC   CPVD I   P
Sbjct: 116 LCTGCDLCVPPCPVDCIAMIP 136


>gi|167718713|ref|ZP_02401949.1| ferredoxin [Burkholderia pseudomallei DM98]
 gi|167814883|ref|ZP_02446563.1| ferredoxin [Burkholderia pseudomallei 91]
          Length = 165

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 26/81 (32%), Gaps = 10/81 (12%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
             +     E A       E+ CI C LC   CP  AI                 + I   
Sbjct: 66  PLNQAHGVERARPVAFIDEQLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVAE 115

Query: 102 KCIYCGLCQEACPVDAIVEGP 122
            C  C LC   CPVD I   P
Sbjct: 116 LCTGCDLCVPPCPVDCIAMIP 136


>gi|154492842|ref|ZP_02032468.1| hypothetical protein PARMER_02481 [Parabacteroides merdae ATCC
           43184]
 gi|154087147|gb|EDN86192.1| hypothetical protein PARMER_02481 [Parabacteroides merdae ATCC
           43184]
          Length = 1182

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 27/82 (32%), Gaps = 16/82 (19%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG  A     N    CI C  C  +CP                A       +     +  
Sbjct: 676 RGVAAFVPVWNE-ANCIQCNQCAYVCPHASIRPFVLNDEEQKGANFPMLDVKAPATMKGM 734

Query: 94  V-RYDIDMIKCIYCGLCQEACP 114
             R  +D++ C+ CG C + CP
Sbjct: 735 KFRMQVDVMDCLGCGNCADICP 756


>gi|167893415|ref|ZP_02480817.1| ferredoxin [Burkholderia pseudomallei 7894]
          Length = 163

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 26/81 (32%), Gaps = 10/81 (12%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
             +     E A       E+ CI C LC   CP  AI                 + I   
Sbjct: 66  PLNQAHGVERARPVAFIDEQLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVAE 115

Query: 102 KCIYCGLCQEACPVDAIVEGP 122
            C  C LC   CPVD I   P
Sbjct: 116 LCTGCDLCVPPCPVDCIAMIP 136


>gi|322371908|ref|ZP_08046450.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Haladaptatus
           paucihalophilus DX253]
 gi|320548330|gb|EFW90002.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Haladaptatus
           paucihalophilus DX253]
          Length = 594

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 25/85 (29%), Gaps = 16/85 (18%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           EKG      R    +R     +  C       A+                  R     D 
Sbjct: 45  EKGEFPNTNRNFSVMRCNHCDDSPCTDVCPVTAL----------------WEREDGIVDF 88

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPN 123
           D  +CI C  C + CP DA+   P 
Sbjct: 89  DPERCIGCKACMQGCPYDALYIDPE 113



 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 17/91 (18%)

Query: 56  YPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRRTVRYDIDMIKCIYCGL-- 108
           +     RCI C  C   C  +                 G       +  +++C +C    
Sbjct: 9   FVIDNRRCIGCHACTVACKTEHDDPIGVNKTWVKYIEKGEFPNTNRNFSVMRCNHCDDSP 68

Query: 109 CQEACPVDAIVEGPNFEFATETRQELYYDKE 139
           C + CPV A+ E          R++   D +
Sbjct: 69  CTDVCPVTALWE----------REDGIVDFD 89



 Score = 41.2 bits (95), Expect = 0.053,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 4/64 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ERCI CK C   CP  A+ I+                    +      C   CP DAI
Sbjct: 89  DPERCIGCKACMQGCPYDALYIDPETSTAAKCNYCSHRVDTGRE----PACVTVCPEDAI 144

Query: 119 VEGP 122
           + G 
Sbjct: 145 IAGD 148


>gi|307719238|ref|YP_003874770.1| iron-sulfur cluster-binding protein [Spirochaeta thermophila DSM
           6192]
 gi|306532963|gb|ADN02497.1| iron-sulfur cluster-binding protein [Spirochaeta thermophila DSM
           6192]
          Length = 371

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 12/60 (20%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           +RC  C  C  +CP   IT++  P                 +CIYC  C E CP +AI  
Sbjct: 309 DRCRRCGYCARVCPVSCITMDGLPVWD------------YSRCIYCYCCHENCPHEAIEL 356



 Score = 40.5 bits (93), Expect = 0.077,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 2/39 (5%)

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVEG--PNFEFA 127
               R  +   +C  CG C   CPV  I     P ++++
Sbjct: 299 WVRSRPRVIEDRCRRCGYCARVCPVSCITMDGLPVWDYS 337


>gi|302670768|ref|YP_003830728.1| ech hydrogenase subunit F EchF [Butyrivibrio proteoclasticus B316]
 gi|302395241|gb|ADL34146.1| ech hydrogenase subunit F EchF [Butyrivibrio proteoclasticus B316]
          Length = 166

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 36/110 (32%), Gaps = 17/110 (15%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
             L        T     E        RG        N  + C+ C LC   CP  AIT++
Sbjct: 9   TILHNLVSKPKTRKVEKE---YPTGTRGHVE-----NDMDVCVLCGLCSIKCPTHAITVD 60

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
                    +    + I  + CI C  C + CP   +  G  F+   E +
Sbjct: 61  ---------KVAKTWSIRPMSCIQCRCCVDNCPKKCLSMGLRFQEPGEEK 101


>gi|294054685|ref|YP_003548343.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Coraliomargarita
           akajimensis DSM 45221]
 gi|293614018|gb|ADE54173.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Coraliomargarita
           akajimensis DSM 45221]
          Length = 1188

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/129 (17%), Positives = 27/129 (20%), Gaps = 26/129 (20%)

Query: 31  KTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAICPA------------- 75
             +   P        S   +   A        E CI C  C   CP              
Sbjct: 656 PVSAFRPDGVWDVGTSQWEKRNIAQEIPIWDPEVCIQCNKCVQACPHAAIRSNFVDPDAL 715

Query: 76  -QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLCQEACP--------VDAIVEGPNF 124
             A              +  +Y I      C  C LC   CP          AI      
Sbjct: 716 NDAPDCFRSVDFKVREHKGAKYIIQVAPEDCTGCSLCVAVCPAKNKRNPREKAINMRDQE 775

Query: 125 EFATETRQE 133
               + R  
Sbjct: 776 PLLADERAN 784


>gi|167737726|ref|ZP_02410500.1| ferredoxin [Burkholderia pseudomallei 14]
          Length = 173

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 26/81 (32%), Gaps = 10/81 (12%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
             +     E A       E+ CI C LC   CP  AI                 + I   
Sbjct: 66  PLNQAHGVERARPVAFIDEQLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVAE 115

Query: 102 KCIYCGLCQEACPVDAIVEGP 122
            C  C LC   CPVD I   P
Sbjct: 116 LCTGCDLCVPPCPVDCIAMIP 136


>gi|218781191|ref|YP_002432509.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218762575|gb|ACL05041.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 390

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 11/64 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++C+ C  CE  CP QAI I+                ID+ KCI CGLC  AC   A+
Sbjct: 297 DSDKCVLCGKCEKRCPTQAIKIKKDAV-----------KIDLGKCIGCGLCAAACKPGAL 345

Query: 119 VEGP 122
              P
Sbjct: 346 TMAP 349



 Score = 37.8 bits (86), Expect = 0.59,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 21/42 (50%)

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           + PR  D  +   R  +D  KC+ CG C++ CP  AI    +
Sbjct: 280 AAPRPADFVQSNFRAALDSDKCVLCGKCEKRCPTQAIKIKKD 321


>gi|154150339|ref|YP_001403957.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Candidatus Methanoregula boonei 6A8]
 gi|153998891|gb|ABS55314.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methanoregula boonei 6A8]
          Length = 368

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 25/68 (36%), Gaps = 11/68 (16%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C  C  C  +CP  AIT+           R  +  ID   CI C  C   CPV AI    
Sbjct: 195 CTGCGKCTEVCPKSAITL-----------RNKKSVIDKDLCIGCFECMTVCPVHAIEVDW 243

Query: 123 NFEFATET 130
             E    T
Sbjct: 244 ETEIPLFT 251



 Score = 39.3 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 16/62 (25%), Gaps = 3/62 (4%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI---DMIKCIYCGLCQEACPVDAIVE 120
              K  E      AI   +        +R             C  CG C E CP  AI  
Sbjct: 153 THFKGHEVAGFGGAIKNLAMGCAPPAGKRAQHQAKPFSMPAVCTGCGKCTEVCPKSAITL 212

Query: 121 GP 122
             
Sbjct: 213 RN 214


>gi|153808447|ref|ZP_01961115.1| hypothetical protein BACCAC_02741 [Bacteroides caccae ATCC 43185]
 gi|149128769|gb|EDM19986.1| hypothetical protein BACCAC_02741 [Bacteroides caccae ATCC 43185]
          Length = 1182

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 28/81 (34%), Gaps = 15/81 (18%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG  A     N  E CI C  C  +CP                A   +           T
Sbjct: 676 RGVAAFVPEWN-PENCIQCNKCAYVCPHASIRPFVLDAEEQKGAQFEQLKAVGKVFDGMT 734

Query: 94  VRYDIDMIKCIYCGLCQEACP 114
            R  +D++ C+ CG C + CP
Sbjct: 735 FRIQVDVLDCLGCGNCADICP 755


>gi|150399311|ref|YP_001323078.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus vannielii SB]
 gi|150012014|gb|ABR54466.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           vannielii SB]
          Length = 352

 Score = 47.4 bits (111), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 37/92 (40%), Gaps = 1/92 (1%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
            EK       R     R     +  C+ C +C  ICP  AI +        G     + D
Sbjct: 7   DEKDGVIEISREGVEKRVLKWEDCVCVGCGICNEICPTNAIEMGPLGAIFRGDIDAPKLD 66

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           I   KC+ CG+C  ACP DA+    N +  TE
Sbjct: 67  IS-EKCVLCGMCACACPFDAVTLKINDKLNTE 97



 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 33/71 (46%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R    L      ++ C+ C +C   CPA AI +          +      +D+  C+YC 
Sbjct: 139 RKTLVLGEINIKKDACVLCGICADYCPADAIELVPNKMNALNLKPIADIKVDLDACVYCK 198

Query: 108 LCQEACPVDAI 118
           +C++ACP +AI
Sbjct: 199 VCEKACPHNAI 209



 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 8/75 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV--------RYDIDMIKCIYCGLCQ 110
             + C+ CK+CE  CP  AI             +          + +ID   C+ CG C 
Sbjct: 190 DLDACVYCKVCEKACPHNAIEAICYKCPLASRIKKPELYSEIKGQTNIDKDLCVSCGWCA 249

Query: 111 EACPVDAIVEGPNFE 125
             CPV+AI     FE
Sbjct: 250 NICPVEAITVEKPFE 264



 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +++C+ C+ CE +CP  AI +E        T      +I    C+ CG+C + CP DAI
Sbjct: 111 NQKKCVLCEQCELVCPQSAIDVE-RTIPERKTLVLGEINIKKDACVLCGICADYCPADAI 169

Query: 119 VEGPN 123
              PN
Sbjct: 170 ELVPN 174



 Score = 42.4 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 8/83 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P E  +    F GE  +       + C AC  C ++CP +A+     P+      +  +
Sbjct: 252 CPVEAITVEKPFEGELLI-----DNDTCGACGACISVCPCKALVF---PKPEKAADKVPK 303

Query: 96  YDIDMIKCIYCGLCQEACPVDAI 118
             ++   CI CG C ++CPVDA+
Sbjct: 304 VSVNPAVCILCGACAQSCPVDAL 326



 Score = 39.7 bits (91), Expect = 0.12,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 5/84 (5%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR--- 95
           E G     FRG+    +  +  E+C+ C +C   CP  A+T++   + +    +  +   
Sbjct: 48  EMGPLGAIFRGDIDAPKL-DISEKCVLCGMCACACPFDAVTLKINDKLNTEMPQYPKIKR 106

Query: 96  -YDIDMIKCIYCGLCQEACPVDAI 118
             +++  KC+ C  C+  CP  AI
Sbjct: 107 GIELNQKKCVLCEQCELVCPQSAI 130


>gi|307354477|ref|YP_003895528.1| cobyrinic acid ac-diamide synthase [Methanoplanus petrolearius DSM
           11571]
 gi|307157710|gb|ADN37090.1| Cobyrinic acid ac-diamide synthase [Methanoplanus petrolearius DSM
           11571]
          Length = 283

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 25/98 (25%), Gaps = 17/98 (17%)

Query: 31  KTTINYPFEKGSTSPRFRGEHALRRY------PNGEERCIACKLCEAICPAQAITIESGP 84
             T+     +      F       R           + C  C  C   C   AI +    
Sbjct: 30  PVTLVDCDVEVPNLHLFFESEPEIRDVFTTIPKVDTDLCTLCGDCGNFCRYGAIAVLKD- 88

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                     R  I    C  CG C   CP  AI E P
Sbjct: 89  ----------RVLIFEKMCHACGGCMIVCPEKAISETP 116


>gi|295106918|emb|CBL04461.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric
           [Gordonibacter pamelaeae 7-10-1-b]
          Length = 1171

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 36/124 (29%), Gaps = 23/124 (18%)

Query: 29  KAKTTINYP-----FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG 83
           +   +   P     FE+G+ +   RG             CI C  C  +CP   I   + 
Sbjct: 652 RLPVSAFIPHVDGQFEQGAAAYEKRGVAVSVPAW-DAATCIQCNQCAFVCPHATIRPFAL 710

Query: 84  PRCHDGTRRTVRYD----------------IDMIKCIYCGLCQEACPVDAIVEGP-NFEF 126
                                         I  + C+ C +C   CP D++   P   E 
Sbjct: 711 TEAEAAAAPAATTLVPAKGKAAAGLQYTLAISPLDCMGCSVCVNVCPSDSLSMVPQEDEL 770

Query: 127 ATET 130
           A + 
Sbjct: 771 AQQD 774


>gi|269122203|ref|YP_003310380.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Sebaldella
           termitidis ATCC 33386]
 gi|268616081|gb|ACZ10449.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Sebaldella
           termitidis ATCC 33386]
          Length = 1178

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 33/105 (31%), Gaps = 20/105 (19%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ--------------AITIESG 83
           FE G+T+   RG           E CI C  C  +CP                A    + 
Sbjct: 666 FENGTTAYEKRGIAVNVPEWV-PENCIQCNQCAFVCPHAVIRPFLINEEELAAAPEGLTT 724

Query: 84  PRCHDGTRRTVRYDIDMI--KCIYCGLCQEACPVD---AIVEGPN 123
            +        ++Y I +    C  CG C   CP     AI   P 
Sbjct: 725 IKAMGKGLEGLQYKIQVSTLDCTGCGSCVNVCPAPKGKAIKMEPI 769


>gi|251792842|ref|YP_003007568.1| electron transport complex protein RnfC [Aggregatibacter
           aphrophilus NJ8700]
 gi|247534235|gb|ACS97481.1| electron transport complex protein RnfC [Aggregatibacter
           aphrophilus NJ8700]
          Length = 843

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 35/108 (32%), Gaps = 5/108 (4%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CP + +  +               +  +  CI CG+C   CP  
Sbjct: 372 PEEEKSCIRCSACSDACPVK-LMPQQLYWFARSEDHEKAEEYSLKDCIECGICAYVCPSH 430

Query: 117 AIVEGPNFEFATETRQELYYDKERL-LNNGDRWESEIVRNIVTDSPYR 163
            I     F        E    K +L      R+E    R +  +   R
Sbjct: 431 -IPLIQYFRQEKAKIWE-IKHKAKLAEEAKIRFEQRQAR-LEREEQER 475


>gi|254456760|ref|ZP_05070188.1| ferredoxin [Campylobacterales bacterium GD 1]
 gi|207085552|gb|EDZ62836.1| ferredoxin [Campylobacterales bacterium GD 1]
          Length = 747

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 1/83 (1%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
            + R              CI C+ C  +C           +    +   +  + D++ C 
Sbjct: 130 DQSREIKDWGLINYDPSLCILCEKCVHVCNEVIGDDAIDVQFGGYSSTIIPKNSDVLDCT 189

Query: 105 YCGLCQEACPVDAIVEGPNFEFA 127
           +CG C   CPV A+V   NF+++
Sbjct: 190 FCGECIAVCPVGALV-SSNFKYS 211


>gi|169343832|ref|ZP_02864829.1| [Fe] hydrogenase [Clostridium perfringens C str. JGS1495]
 gi|169297952|gb|EDS80043.1| [Fe] hydrogenase [Clostridium perfringens C str. JGS1495]
          Length = 696

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 13/88 (14%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              EE+CI C  C+ IC                   ++    D   CI CG C   CP  
Sbjct: 21  CRDEEKCIKCGSCKNICTD---------YIGVNGHYSLEKTNDTAVCINCGQCANVCPTS 71

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNN 144
           +I E  ++    +  Q+   DK++++  
Sbjct: 72  SITEVFDY----KKVQDAISDKDKIVIV 95


>gi|167901877|ref|ZP_02489082.1| ferredoxin [Burkholderia pseudomallei NCTC 13177]
          Length = 177

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 26/81 (32%), Gaps = 10/81 (12%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
             +     E A       E+ CI C LC   CP  AI                 + I   
Sbjct: 66  PLNQAHGVERARPVAFIDEQLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVAE 115

Query: 102 KCIYCGLCQEACPVDAIVEGP 122
            C  C LC   CPVD I   P
Sbjct: 116 LCTGCDLCVPPCPVDCIAMIP 136


>gi|149912038|ref|ZP_01900631.1| electron transport complex protein RnfC [Moritella sp. PE36]
 gi|149804899|gb|EDM64934.1| electron transport complex protein RnfC [Moritella sp. PE36]
          Length = 931

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 2/66 (3%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C  C  +CP   +  +               D +++ CI CG C   CP   I    
Sbjct: 380 CIRCGECSEVCPVD-LLPQQLHWYSQAKDVKKLNDYNLMDCIECGACSYVCPSQ-IPLVH 437

Query: 123 NFEFAT 128
            +  A 
Sbjct: 438 QYRIAK 443


>gi|153814130|ref|ZP_01966798.1| hypothetical protein RUMTOR_00339 [Ruminococcus torques ATCC 27756]
 gi|317499935|ref|ZP_07958171.1| NADH dehydrogenase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331087842|ref|ZP_08336767.1| hypothetical protein HMPREF1025_00350 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848526|gb|EDK25444.1| hypothetical protein RUMTOR_00339 [Ruminococcus torques ATCC 27756]
 gi|316898652|gb|EFV20687.1| NADH dehydrogenase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330409537|gb|EGG88978.1| hypothetical protein HMPREF1025_00350 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 639

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 15/97 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            LRY F+ +   +   +K            L +Y    ++C  C LC   CPA AI    
Sbjct: 556 TLRY-FRDEYIAHIVDKKCPAGVC----KDLLQYKIDPDKCKGCTLCARTCPADAIIG-- 608

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
                   +    + I+  KC+ CG C E C   AI 
Sbjct: 609 --------KVKEVHMINPEKCLKCGACMEKCRFGAIY 637


>gi|37526280|ref|NP_929624.1| electron transport complex protein RnfC [Photorhabdus luminescens
           subsp. laumondii TTO1]
 gi|36785711|emb|CAE14696.1| Electron transport complex protein RnfC [Photorhabdus luminescens
           subsp. laumondii TTO1]
          Length = 852

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           CI C LC   CPA+ +  +       G       D ++  CI CG C   CP
Sbjct: 377 CIRCGLCVEACPAR-LLPQQLYWFSRGQEHEKARDHNLFDCIECGACAYVCP 427



 Score = 37.8 bits (86), Expect = 0.54,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 10/45 (22%)

Query: 100 MIKCIYCGLCQEACPVDAIVE-------GPNFEFATETRQELYYD 137
              CI CGLC EACP   + +       G   E A   R    +D
Sbjct: 374 EEACIRCGLCVEACPARLLPQQLYWFSRGQEHEKA---RDHNLFD 415


>gi|332760202|gb|EGJ90498.1| putative pyruvate-flavodoxin oxidoreductase domain protein
           [Shigella flexneri K-671]
          Length = 593

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 32/138 (23%), Gaps = 24/138 (17%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 65  MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 118

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPVDA 117
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 119 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 178

Query: 118 IVEGPNFEFATETRQELY 135
                       +RQE  
Sbjct: 179 RQNPEIKAINMMSRQEHV 196


>gi|323698185|ref|ZP_08110097.1| ferredoxin-dependent glutamate synthase [Desulfovibrio sp. ND132]
 gi|323458117|gb|EGB13982.1| ferredoxin-dependent glutamate synthase [Desulfovibrio
           desulfuricans ND132]
          Length = 544

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 30/102 (29%), Gaps = 15/102 (14%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------ITIESGPRCHDGTRR 92
           E+  T      +    +       C  C  C ++CP  A         +  P      + 
Sbjct: 4   ERPITPSTLSRKDLPWQIKWDINTCTKCGRCTSVCPVNAIELGVFRKRDVKPPMGLSAKP 63

Query: 93  TVRYDIDMI---------KCIYCGLCQEACPVDAIVEGPNFE 125
           T  +               CI C +C   CP +AI     ++
Sbjct: 64  TTEFSTFYGIRQRTDPAYACIGCAMCNMVCPNNAIEPTRQYD 105


>gi|307354476|ref|YP_003895527.1| cobyrinic acid ac-diamide synthase [Methanoplanus petrolearius DSM
           11571]
 gi|307157709|gb|ADN37089.1| Cobyrinic acid ac-diamide synthase [Methanoplanus petrolearius DSM
           11571]
          Length = 289

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 25/73 (34%), Gaps = 11/73 (15%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
            H L       E+C+ C  C   C   A+ I+              Y +  + C  CG+C
Sbjct: 56  FHGLDISVIDTEKCVQCGACLENCRFGAVEIKEDQ-----------YSVRPLLCEGCGVC 104

Query: 110 QEACPVDAIVEGP 122
              CP  AI    
Sbjct: 105 DYVCPSGAISMKK 117


>gi|237715807|ref|ZP_04546288.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D1]
 gi|262407422|ref|ZP_06083970.1| NADH oxidoreductase (quinone), F subunit [Bacteroides sp. 2_1_22]
 gi|293371348|ref|ZP_06617785.1| protein HymB [Bacteroides ovatus SD CMC 3f]
 gi|229443454|gb|EEO49245.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D1]
 gi|262354230|gb|EEZ03322.1| NADH oxidoreductase (quinone), F subunit [Bacteroides sp. 2_1_22]
 gi|292633708|gb|EFF52263.1| protein HymB [Bacteroides ovatus SD CMC 3f]
 gi|295087526|emb|CBK69049.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Bacteroides xylanisolvens XB1A]
          Length = 635

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 10/66 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L  Y    ERCI C LC   CPA AI+                + I   KCI CG+C   
Sbjct: 577 LLTYTISPERCIGCHLCAKNCPADAISGL----------VRKPHVIAPDKCIKCGMCMAR 626

Query: 113 CPVDAI 118
           C  +AI
Sbjct: 627 CKFNAI 632


>gi|219852823|ref|YP_002467255.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanosphaerula palustris E1-9c]
 gi|219547082|gb|ACL17532.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanosphaerula palustris E1-9c]
          Length = 673

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 28/80 (35%), Gaps = 9/80 (11%)

Query: 45  PRFRGEHALRRYP--NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           P   G+  L  Y     EE+C  C +C  +CP  A+ +                 +   K
Sbjct: 582 PIHMGQVELEPYFAMCIEEKCAGCGMCVNLCPYSALALVEKD-------GRTVMQVTEAK 634

Query: 103 CIYCGLCQEACPVDAIVEGP 122
           C  CG C   CP  AI    
Sbjct: 635 CKGCGTCGGFCPGGAIWMNH 654



 Score = 38.5 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 18/48 (37%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           C + +       +        +      + Y ID   C+ CGLC EAC
Sbjct: 273 CPVVKPNVFEMGMAPRKAIYINHPQVVPLIYKIDFDSCVKCGLCVEAC 320


>gi|206890760|ref|YP_002249173.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit A,
           selenocysteine-containing [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742698|gb|ACI21755.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit A,
           selenocysteine-containing [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 666

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 7/62 (11%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++C +C +C  +CP  AI IE                I+   C  CG+C  ACP  AI
Sbjct: 594 DRDKCSSCGVCVPLCPYSAIRIEEYKGKEKAY-------IEPALCAGCGVCASACPSRAI 646

Query: 119 VE 120
             
Sbjct: 647 KF 648



 Score = 35.5 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 13/23 (56%)

Query: 92  RTVRYDIDMIKCIYCGLCQEACP 114
           +     ID  KCI CG+C E CP
Sbjct: 233 KKKAKYIDWDKCIGCGVCTEICP 255


>gi|206575958|ref|YP_002237566.1| pyruvate-flavodoxin oxidoreductase [Klebsiella pneumoniae 342]
 gi|206565016|gb|ACI06792.1| pyruvate-flavodoxin oxidoreductase [Klebsiella pneumoniae 342]
          Length = 1171

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 25/83 (30%), Gaps = 14/83 (16%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDG---------TR 91
             +   AL       + C  C  C  +CP  AI     + E       G           
Sbjct: 674 WEKRGIALEVPVWQPDGCTQCNQCAFVCPHAAIRPALLSPEEQDTAPAGLLSKPAQGAKD 733

Query: 92  RTVRYDIDMIKCIYCGLCQEACP 114
                 I  + C  CG C E+CP
Sbjct: 734 YHYHLAISPLDCSGCGNCVESCP 756


>gi|152999871|ref|YP_001365552.1| FAD linked oxidase domain-containing protein [Shewanella baltica
           OS185]
 gi|151364489|gb|ABS07489.1| FAD linked oxidase domain protein [Shewanella baltica OS185]
          Length = 934

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 6/78 (7%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           E +     I  +         +     D  + KCI CG C++ CP  A+   P    AT 
Sbjct: 509 EGMLNPGVILNDDSTVHVKNIKPCPVVDDFVDKCIECGFCEKTCPTSALNFSPRQRIATL 568

Query: 130 TRQELYYDKERLLNNGDR 147
            R+      ERL  +GD+
Sbjct: 569 -RE-----IERLEQSGDK 580



 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 26/75 (34%), Gaps = 16/75 (21%)

Query: 57  PNGEERCIACKLCEAICPAQAITI----------------ESGPRCHDGTRRTVRYDIDM 100
            +  ++CI C  CE  CP  A+                  +SG +      R       +
Sbjct: 536 DDFVDKCIECGFCEKTCPTSALNFSPRQRIATLREIERLEQSGDKAAAAEMRAAAKYDVV 595

Query: 101 IKCIYCGLCQEACPV 115
             C  C LC  ACPV
Sbjct: 596 DTCAACQLCTIACPV 610


>gi|126740147|ref|ZP_01755836.1| formate dehydrogenase, alpha subunit [Roseobacter sp. SK209-2-6]
 gi|126718602|gb|EBA15315.1| formate dehydrogenase, alpha subunit [Roseobacter sp. SK209-2-6]
          Length = 924

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID----MIKCIYCGLCQEACP 114
             + CI+C LC   C  +    +       G      +DI        C+ CG C +ACP
Sbjct: 147 NLDACISCNLCVRACR-EVQVNDVIGMAGRGHDAYPVFDISDPMGQSSCVACGECVQACP 205

Query: 115 VDAIV 119
             A++
Sbjct: 206 TGALM 210


>gi|53804899|ref|YP_113273.1| putative glutamate synthase (NADPH) small subunit [Methylococcus
           capsulatus str. Bath]
 gi|53758660|gb|AAU92951.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Methylococcus capsulatus str. Bath]
          Length = 546

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 5/64 (7%)

Query: 61  ERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            RC +C  C        A   ++  +   G     RY  D  +C  C +C E CP  AI 
Sbjct: 484 RRCFSCGNCFECDGCYGACPEQAIVKLGPG----KRYRYDYDRCTGCAVCHEQCPAHAIE 539

Query: 120 EGPN 123
               
Sbjct: 540 MISE 543


>gi|20089516|ref|NP_615591.1| hypothetical protein MA0628 [Methanosarcina acetivorans C2A]
 gi|19914426|gb|AAM04071.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 379

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 10/74 (13%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G++        + +C  C  C   C  +A+  +          +   Y I+  KCI C  
Sbjct: 299 GKYYTIYPRINQRKCTQCGTCYLNCSPKAVERQ----------KNGTYRINPEKCILCYC 348

Query: 109 CQEACPVDAIVEGP 122
           C+E CP DA+    
Sbjct: 349 CRELCPNDAVEIKK 362


>gi|45358808|ref|NP_988365.1| tungsten containing formylmethanofuran dehydrogenase subunit F
           [Methanococcus maripaludis S2]
 gi|45047674|emb|CAF30801.1| tungsten containing formylmethanofuran dehydrogenase, subunit F
           [Methanococcus maripaludis S2]
          Length = 352

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 32/71 (45%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R    L      ++ C+ C +C   CPA AI +                 ID+  C+YC 
Sbjct: 139 RKSLVLGEITIKKDDCVLCGICAEYCPADAIELIPNDMNALSLNPIADIKIDLDACVYCK 198

Query: 108 LCQEACPVDAI 118
           +C++ACP +AI
Sbjct: 199 VCEKACPHNAI 209



 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 8/95 (8%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPN-------GEERCIACKLCEAICPAQAITIESGPRCHD 88
            PF+    S   +    + +YP         + +C+ C+ CE +CP Q            
Sbjct: 81  CPFDAVKLSINDKPITEMPQYPKIKRGIELNQSKCVLCEQCELVCP-QCAIDVEREVPER 139

Query: 89  GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
            +       I    C+ CG+C E CP DAI   PN
Sbjct: 140 KSLVLGEITIKKDDCVLCGICAEYCPADAIELIPN 174



 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 35/96 (36%), Gaps = 5/96 (5%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
            E        R     R     +  C+ C +C  ICP  AI +        G     + D
Sbjct: 7   DENDGVIEISRSGVEKRVLKWDDCTCVGCGICSEICPTSAIEMGPLGAIFKGDIDAPKLD 66

Query: 98  IDMIKCIYCGLCQEACPVDA----IVEGPNFEFATE 129
           I   KC+ CG+C  ACP DA    I + P  E    
Sbjct: 67  IS-EKCVLCGMCACACPFDAVKLSINDKPITEMPQY 101



 Score = 42.4 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 35/101 (34%), Gaps = 11/101 (10%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPN---GEERCIACKLCEAICPAQAITIE--------SGP 84
            P +     P      +L    +     + C+ CK+CE  CP  AI              
Sbjct: 164 CPADAIELIPNDMNALSLNPIADIKIDLDACVYCKVCEKACPHNAIEAICYKCPLASKIK 223

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           +         + +ID   C+ CG C   CP DAI     FE
Sbjct: 224 KPELYGEIKGQTNIDKELCVSCGWCANICPADAIEVEKPFE 264



 Score = 41.6 bits (96), Expect = 0.040,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 8/83 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +       F GE  +      E  C AC  C ++CP  A+     P+      +   
Sbjct: 252 CPADAIEVEKPFEGELII-----DEPACNACGACISVCPCNALVF---PQPEKQGDKVPN 303

Query: 96  YDIDMIKCIYCGLCQEACPVDAI 118
             ++   CI CG C  +CPVDA+
Sbjct: 304 VVVNQDVCILCGACTHSCPVDAL 326



 Score = 39.3 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 8/64 (12%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              +E C++C  C  ICPA AI +E                ID   C  CG C   CP +
Sbjct: 236 NIDKELCVSCGWCANICPADAIEVEKPFEGEL--------IIDEPACNACGACISVCPCN 287

Query: 117 AIVE 120
           A+V 
Sbjct: 288 ALVF 291



 Score = 39.3 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 5/84 (5%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC----HDGTRRTV 94
           E G     F+G+    +  +  E+C+ C +C   CP  A+ +    +         +   
Sbjct: 48  EMGPLGAIFKGDIDAPKL-DISEKCVLCGMCACACPFDAVKLSINDKPITEMPQYPKIKR 106

Query: 95  RYDIDMIKCIYCGLCQEACPVDAI 118
             +++  KC+ C  C+  CP  AI
Sbjct: 107 GIELNQSKCVLCEQCELVCPQCAI 130


>gi|28900340|ref|NP_799995.1| putative formate dehydrogenase subunit alpha [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|260362126|ref|ZP_05775122.1| putative formate dehydrogenase, alpha subunit [Vibrio
           parahaemolyticus K5030]
 gi|260877296|ref|ZP_05889651.1| putative formate dehydrogenase [Vibrio parahaemolyticus AN-5034]
 gi|260898333|ref|ZP_05906829.1| putative formate dehydrogenase [Vibrio parahaemolyticus Peru-466]
 gi|28808651|dbj|BAC61828.1| putative formate dehydrogenase, alpha subunit [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|308085116|gb|EFO34811.1| putative formate dehydrogenase [Vibrio parahaemolyticus Peru-466]
 gi|308090720|gb|EFO40415.1| putative formate dehydrogenase [Vibrio parahaemolyticus AN-5034]
 gi|308113817|gb|EFO51357.1| putative formate dehydrogenase, alpha subunit [Vibrio
           parahaemolyticus K5030]
          Length = 1422

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 19/84 (22%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM------------------ 100
              RCI+C  C   C  QA+            R  +R D                     
Sbjct: 636 DANRCISCGQCIQACREQAVHGVLSFVSDKNGRPALRPDDRPRFRSDEKGVGCSGLTLMG 695

Query: 101 -IKCIYCGLCQEACPVDAIVEGPN 123
             KC+ CG+C +ACP  A+V+  +
Sbjct: 696 DSKCVQCGVCVQACPTGAMVDSRD 719



 Score = 33.9 bits (76), Expect = 6.9,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 4/72 (5%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P ++       +G         G+ +C+ C +C   CP  A+            +     
Sbjct: 673 PDDRPRFRSDEKGVGCSGLTLMGDSKCVQCGVCVQACPTGAMVDSRDRSQGRTEQLKAVD 732

Query: 97  DIDMIKCIYCGL 108
            I    C YCG+
Sbjct: 733 TI----CTYCGV 740


>gi|89073352|ref|ZP_01159876.1| electron transport complex protein RnfC [Photobacterium sp. SKA34]
 gi|89050839|gb|EAR56313.1| electron transport complex protein RnfC [Photobacterium sp. SKA34]
          Length = 762

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 37/104 (35%), Gaps = 9/104 (8%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C  C  +CP+  +  +               + ++  CI CG C   CP   I    
Sbjct: 379 CIRCSACADVCPSS-LLPQQLQWYAKDQNYDKCEEYNLQDCIECGACAYVCP-SEIPLVQ 436

Query: 123 NFEFAT---ETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            +  A      R +   + ER      R+E++  R +  D   R
Sbjct: 437 YYRQAKAEIWARSQDEMNAERARQ---RFEAKQAR-MERDKAER 476


>gi|170717801|ref|YP_001784864.1| electron transporter subunit RnfB [Haemophilus somnus 2336]
 gi|168825930|gb|ACA31301.1| electron transport complex, RnfABCDGE type, B subunit [Haemophilus
           somnus 2336]
          Length = 196

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 25/80 (31%), Gaps = 10/80 (12%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
            S  F  +   +     EE CI C  C   CP  AI   +             + I    
Sbjct: 93  PSGNFEQDPIPKVAFINEEMCIGCTKCIQACPVDAIIGTNK----------AMHTIIADL 142

Query: 103 CIYCGLCQEACPVDAIVEGP 122
           C  C LC   CP D I    
Sbjct: 143 CTGCELCVAPCPTDCISMIN 162


>gi|94309960|ref|YP_583170.1| ferredoxin [Cupriavidus metallidurans CH34]
 gi|93353812|gb|ABF07901.1| electron transport complex, RnfABCDGE type, B subunit [Cupriavidus
           metallidurans CH34]
          Length = 279

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 21/60 (35%), Gaps = 10/60 (16%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C LC   CP  AI                 + +    C  C LC   CPVD I   P
Sbjct: 91  CIGCTLCIQACPVDAIVGAPKQ----------MHTVLPDWCTGCDLCVTPCPVDCIEMIP 140



 Score = 38.2 bits (87), Expect = 0.40,   Method: Composition-based stats.
 Identities = 13/22 (59%), Positives = 15/22 (68%)

Query: 97  DIDMIKCIYCGLCQEACPVDAI 118
            I+   CI C LC +ACPVDAI
Sbjct: 85  RIEESLCIGCTLCIQACPVDAI 106


>gi|299146440|ref|ZP_07039508.1| protein HymB [Bacteroides sp. 3_1_23]
 gi|298516931|gb|EFI40812.1| protein HymB [Bacteroides sp. 3_1_23]
          Length = 635

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 10/66 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L  Y    ERCI C LC   CPA AI+                + I   KCI CG+C   
Sbjct: 577 LLTYTISPERCIGCHLCAKNCPADAISGL----------VRKPHVIAPDKCIKCGMCMAR 626

Query: 113 CPVDAI 118
           C  +AI
Sbjct: 627 CKFNAI 632


>gi|295111540|emb|CBL28290.1| electron transport complex, RnfABCDGE type, B subunit
           [Synergistetes bacterium SGP1]
          Length = 277

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 5/70 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGP-----RCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
             E+C+ C  C + CP   +T+          C    +      +  I CI CGLC   C
Sbjct: 171 DREQCVGCGACVSACPKDVLTLIPQTSDVVVACGSHWKGPAVRRVCSIGCIGCGLCARVC 230

Query: 114 PVDAIVEGPN 123
           P  AI    +
Sbjct: 231 PAGAITMDRD 240



 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 11/59 (18%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           CI C LC  +CPA AIT++                ID  KC  CGLC + CP   I  G
Sbjct: 220 CIGCGLCARVCPAGAITMDRDLAV-----------IDPAKCTNCGLCAQKCPAKCIETG 267



 Score = 39.3 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 10/61 (16%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI    C  +C   AI +                 +D  +C+ CG C  ACP D +   P
Sbjct: 145 CIGFGTCTKVCNFDAIFMGPDGLPV----------VDREQCVGCGACVSACPKDVLTLIP 194

Query: 123 N 123
            
Sbjct: 195 Q 195


>gi|260892081|ref|YP_003238178.1| formate dehydrogenase, alpha subunit [Ammonifex degensii KC4]
 gi|260864222|gb|ACX51328.1| formate dehydrogenase, alpha subunit [Ammonifex degensii KC4]
          Length = 898

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 3/69 (4%)

Query: 59  GEERCIACKLCEAICPA---QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
              +CI C LC  +C     +A+   +               ++   C++CG C   CPV
Sbjct: 146 DMNKCILCGLCVRVCNEIMGKAVIDFAYRGVRTKITPPFELPLEKAGCVFCGNCVAVCPV 205

Query: 116 DAIVEGPNF 124
            A+   P +
Sbjct: 206 GALFPKPMW 214



 Score = 33.5 bits (75), Expect = 9.1,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 22/84 (26%), Gaps = 8/84 (9%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIAC---KLC-----EAICPAQAITIESGPRCHDG 89
             +       R         N  E C+ C     C           +    E   R +  
Sbjct: 77  ETESPAVRHARYTLIELLLANHPEDCLTCERTGSCVLQDLAYRYGVRRTRFEGEKRNYPI 136

Query: 90  TRRTVRYDIDMIKCIYCGLCQEAC 113
                    DM KCI CGLC   C
Sbjct: 137 EDSNPFIVRDMNKCILCGLCVRVC 160


>gi|242240653|ref|YP_002988834.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Dickeya dadantii
           Ech703]
 gi|242132710|gb|ACS87012.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Dickeya dadantii
           Ech703]
          Length = 1177

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 29/127 (22%), Gaps = 26/127 (20%)

Query: 31  KTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88
             +   P        +   +   A          C  C  C A CP  AI  +  P    
Sbjct: 655 PVSALPPDGTWPVGTTRWEKRNIAEEIPLWKPALCTQCNHCVAACPHSAIRAKVVPADAM 714

Query: 89  ----------------GTRRTVRYDIDMIKCIYCGLCQEACPV--------DAIVEGPNF 124
                              +     +    C  C LC E CP          AI   P  
Sbjct: 715 AGAPASLQSLEVKARDMRGQKYVLQVAPEDCTGCNLCVEVCPAKDRQNPDIKAINMEPRL 774

Query: 125 EFATETR 131
           E     +
Sbjct: 775 EHVATEK 781


>gi|256810707|ref|YP_003128076.1| protein of unknown function DUF362 [Methanocaldococcus fervens
           AG86]
 gi|256793907|gb|ACV24576.1| protein of unknown function DUF362 [Methanocaldococcus fervens
           AG86]
          Length = 356

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 15/93 (16%)

Query: 28  FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH 87
           FK   T+           +      + +    + +C+ C++CE +CP  AI         
Sbjct: 274 FKKPATVFLNSILPPQIIKIIFNFTIPKPKINKSKCLRCRICEKVCPVNAINNLK----- 328

Query: 88  DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
                     ID  KCI C  C E CP +AI  
Sbjct: 329 ----------IDRKKCINCYCCHEMCPYNAIDL 351


>gi|254786925|ref|YP_003074354.1| electron transport complex, RnfABCDGE type, B subunit
           [Teredinibacter turnerae T7901]
 gi|237685549|gb|ACR12813.1| electron transport complex, RnfABCDGE type, B subunit
           [Teredinibacter turnerae T7901]
          Length = 200

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 10/62 (16%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C   CP  AI   +             + +   +C  C LC E CPVD I  
Sbjct: 120 DECIGCTKCIQACPVDAILGAAKQ----------MHTVIGSECTGCDLCVEPCPVDCIEM 169

Query: 121 GP 122
            P
Sbjct: 170 RP 171



 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 2/49 (4%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +    A  ++S        ++     I   +CI C  C +ACPVDAI
Sbjct: 91  ANLLDVDAPDLDSEHGEASDVKKVAF--IREDECIGCTKCIQACPVDAI 137


>gi|238752179|ref|ZP_04613660.1| Electron transport complex protein rnfC [Yersinia rohdei ATCC
           43380]
 gi|238709550|gb|EEQ01787.1| Electron transport complex protein rnfC [Yersinia rohdei ATCC
           43380]
          Length = 541

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 1/54 (1%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           + CI C LC   CPA  +  +       G       + ++  CI CG C   CP
Sbjct: 342 QACIRCGLCVDACPAG-LLPQQLYWFSRGEEHEKARNHNLFDCIECGACAYVCP 394


>gi|219667455|ref|YP_002457890.1| formate dehydrogenase, subunit alpha [Desulfitobacterium hafniense
           DCB-2]
 gi|219537715|gb|ACL19454.1| formate dehydrogenase, alpha subunit [Desulfitobacterium hafniense
           DCB-2]
          Length = 893

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 7/87 (8%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYD 97
           E+            LR       +CI C  C   C   Q  ++    +    ++    +D
Sbjct: 128 ERRELPLDDSNPFILR----DPNKCILCGKCVRACEEIQGRSVLDFFKRGFDSQVGPAFD 183

Query: 98  IDMIK--CIYCGLCQEACPVDAIVEGP 122
           +   +  C++CG C   CPV A+VE  
Sbjct: 184 VPYSESECVFCGSCVSVCPVGALVEKK 210


>gi|212635175|ref|YP_002311700.1| electron transport complex protein RnfC [Shewanella piezotolerans
           WP3]
 gi|212556659|gb|ACJ29113.1| Electron transport complex, RnfABCDGE type, C subunit [Shewanella
           piezotolerans WP3]
          Length = 917

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 37/111 (33%), Gaps = 11/111 (9%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            CI C  C   CPAQ +  +                 ++  CI CG C   CP   I   
Sbjct: 379 PCIRCGECAVACPAQ-LLPQQLFWHAQAQEYDKAASFNLNDCIECGCCSYVCP-SDIPLV 436

Query: 122 PNFEFA-------TETRQELYYDKERLLNNGDRWESEIVR--NIVTDSPYR 163
             +  A       +E +++    K+R      R + E     N   ++  R
Sbjct: 437 EYYRVAKSALRSQSEEKKQADLAKQRFDARQQRLQDEKTARENKAKEAAER 487


>gi|209515499|ref|ZP_03264364.1| dihydroorotate dehydrogenase family protein [Burkholderia sp. H160]
 gi|209503966|gb|EEA03957.1| dihydroorotate dehydrogenase family protein [Burkholderia sp. H160]
          Length = 426

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 6/76 (7%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   +   +    +ERCI C LC   C   +    +  R          +++    C+ 
Sbjct: 328 QYLNLNYDIKARIDQERCIQCGLCHIACEDTSHQAITATRDGQ-----RHFEVVDANCVG 382

Query: 106 CGLCQEACPV-DAIVE 120
           C LC   CPV   I  
Sbjct: 383 CNLCMHVCPVDQCITM 398


>gi|170760141|ref|YP_001788137.1| dihydropyrimidine dehydrogenase [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407130|gb|ACA55541.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum
           A3 str. Loch Maree]
          Length = 411

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/110 (15%), Positives = 33/110 (30%), Gaps = 7/110 (6%)

Query: 15  EFVGAFFLCLRY-FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
           + +      ++   F+    +     K            +      EE C+ C  C   C
Sbjct: 295 DMIEGLSYYMKEKGFEKLEDMVGLANKNIIPAEDLDRGYIVYPKFDEENCVGCGRCYISC 354

Query: 74  PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                    G +      +  +  ++   C+ C LC   CP+  I +G  
Sbjct: 355 YDG------GHQAIKWDGKNRKPILEKENCVGCHLCANVCPIQCISKGEI 398


>gi|168216086|ref|ZP_02641711.1| [Fe] hydrogenase [Clostridium perfringens NCTC 8239]
 gi|182381892|gb|EDT79371.1| [Fe] hydrogenase [Clostridium perfringens NCTC 8239]
          Length = 696

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 13/88 (14%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              EE+CI C  C+ IC                   ++    D+  CI CG C   CP  
Sbjct: 21  CRDEEKCIKCGSCKNICTD---------YIGVNGHYSLEKTNDIAVCINCGQCANVCPTS 71

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNN 144
           +I E  ++    +  Q+   DK++++  
Sbjct: 72  SITEVFDY----KKVQDAISDKDKIVIV 95


>gi|152979395|ref|YP_001345024.1| electron transport complex protein RnfC [Actinobacillus
           succinogenes 130Z]
 gi|171704327|sp|A6VQ42|RNFC_ACTSZ RecName: Full=Electron transport complex protein rnfC
 gi|150841118|gb|ABR75089.1| electron transport complex, RnfABCDGE type, C subunit
           [Actinobacillus succinogenes 130Z]
          Length = 703

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/132 (18%), Positives = 38/132 (28%), Gaps = 22/132 (16%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEER----CIACKLCEAICPAQAITIESGPRCHDGTR 91
            P  +   +       A   +    +     CI C  C   CP   +  +          
Sbjct: 347 VPDLRAPITKTANCLLAPDHFEYDPQATEQACIRCSACSDACPVH-LMPQQMYWYARAED 405

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
                   ++ CI CGLC   CP   I     F      RQE    K ++      W+ E
Sbjct: 406 HEKSNQYQLMDCIECGLCAYVCPSH-IPLIQYF------RQE----KAKI------WDIE 448

Query: 152 IVRNIVTDSPYR 163
                  ++  R
Sbjct: 449 AKARKSEEAKIR 460


>gi|77464661|ref|YP_354165.1| NAD-dependent formate dehydrogenase, alpha subunit [Rhodobacter
           sphaeroides 2.4.1]
 gi|77389079|gb|ABA80264.1| NAD-dependent formate dehydrogenase, alpha subunit [Rhodobacter
           sphaeroides 2.4.1]
          Length = 960

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 29/92 (31%), Gaps = 4/92 (4%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDID 99
                 + +   +     +CI C  C   C       A+TI+        +         
Sbjct: 162 PQWMAKDESNPYFTYDPSKCIVCSRCVRACEEVQGTFALTIDGRGFDSRVSAGMASDSFL 221

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
              C+ CG C +ACP   + E    E  T  R
Sbjct: 222 TSDCVSCGACVQACPTATLQEKSVIEIGTPER 253


>gi|127514064|ref|YP_001095261.1| FAD linked oxidase domain-containing protein [Shewanella loihica
           PV-4]
 gi|126639359|gb|ABO25002.1| FAD linked oxidase domain protein [Shewanella loihica PV-4]
          Length = 934

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 9/91 (9%)

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           +     I  +         +     D  + +CI CG C++ CP  A+   P    AT  R
Sbjct: 511 LLNPGVILNDDANVHVKNIKPCPVVDDFVDRCIECGFCEKTCPTSALNFTPRQRIATL-R 569

Query: 132 QELYYDKERLLNNGDRWESEIVRNIVTDSPY 162
           +       RL  +GD+   +    +   + Y
Sbjct: 570 E-----IARLEASGDK---QAAEEMRAAAKY 592



 Score = 38.2 bits (87), Expect = 0.45,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 27/76 (35%), Gaps = 18/76 (23%)

Query: 57  PNGEERCIACKLCEAICPAQAITIES-----------------GPRCHDGTRRTVRYDID 99
            +  +RCI C  CE  CP  A+                       +  +  R   +YD+ 
Sbjct: 536 DDFVDRCIECGFCEKTCPTSALNFTPRQRIATLREIARLEASGDKQAAEEMRAAAKYDVV 595

Query: 100 MIKCIYCGLCQEACPV 115
              C  C LC  ACPV
Sbjct: 596 -DTCAACQLCTIACPV 610


>gi|325262177|ref|ZP_08128915.1| putative pyruvate formate-lyase-activating enzyme [Clostridium sp.
           D5]
 gi|324033631|gb|EGB94908.1| putative pyruvate formate-lyase-activating enzyme [Clostridium sp.
           D5]
          Length = 296

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 11/60 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERC+ C  C ++CP+ A   +                 +  KCI CG C E C  +A+  
Sbjct: 53  ERCVQCGACGSVCPSHAHIFDENKHL-----------FEPEKCIRCGACAEVCCTEALEM 101


>gi|260171115|ref|ZP_05757527.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D2]
 gi|315919435|ref|ZP_07915675.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D2]
 gi|313693310|gb|EFS30145.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D2]
          Length = 635

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 10/66 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L  Y    ERCI C LC   CPA AI+                + I   KCI CG+C   
Sbjct: 577 LLTYTISPERCIGCHLCAKNCPADAISGL----------VRKPHVIAPDKCIKCGMCMAR 626

Query: 113 CPVDAI 118
           C  +AI
Sbjct: 627 CKFNAI 632


>gi|271499269|ref|YP_003332294.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Dickeya dadantii
           Ech586]
 gi|270342824|gb|ACZ75589.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Dickeya dadantii
           Ech586]
          Length = 1177

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/127 (18%), Positives = 30/127 (23%), Gaps = 26/127 (20%)

Query: 31  KTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88
             +   P        +   +   A        E C  C  C A CP  AI  +  P    
Sbjct: 655 PVSALPPDGTWPVGTTQWEKRNIAEAIPLWKPELCTQCNHCVAACPHSAIRAKVVPAEAM 714

Query: 89  ----------------GTRRTVRYDIDMIKCIYCGLCQEACPV--------DAIVEGPNF 124
                              +     +    C  C LC E CP          AI   P  
Sbjct: 715 ADAPASLQSLDVKARDMRGQKYVLQVAPEDCTGCNLCVEVCPAKDRQNPEIKAINMEPRL 774

Query: 125 EFATETR 131
           E     +
Sbjct: 775 EHVATEK 781


>gi|224583312|ref|YP_002637110.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|224467839|gb|ACN45669.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
          Length = 411

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +      +E+C+ C  C   C         G +  +    +     +  K
Sbjct: 324 IPAEDLDRSYIVYPRINQEKCVGCGRCYISCYDG------GHQAMEWDEHSRTPHCNTEK 377

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 378 CVGCLLCGHVCPVACIDLG 396


>gi|254479744|ref|ZP_05093027.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Carboxydibrachium
           pacificum DSM 12653]
 gi|214034317|gb|EEB75108.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Carboxydibrachium
           pacificum DSM 12653]
          Length = 817

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/117 (23%), Positives = 40/117 (34%), Gaps = 28/117 (23%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTRRTV 94
            G+ +   RG           + CI C  C  +CP  AI     T E      +G +   
Sbjct: 392 PGTAAYEKRGIAVDVPEWQ-IDNCIQCNQCAFVCPHAAIRPFLLTEEEVKNAPEGFKVKK 450

Query: 95  -----------RYDIDMIKCIYCGLCQEACP--VDAIVEGP---------NFEFATE 129
                      R  + ++ C  CG+C   CP    A+V  P         N+E+A  
Sbjct: 451 AIGKGFEGLYYRIQVSVLDCTGCGVCVNECPAKEKALVMKPLETQLHEAKNWEYAMT 507


>gi|171320519|ref|ZP_02909546.1| dihydroorotate dehydrogenase family protein [Burkholderia ambifaria
           MEX-5]
 gi|171094239|gb|EDT39319.1| dihydroorotate dehydrogenase family protein [Burkholderia ambifaria
           MEX-5]
          Length = 435

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 6/63 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117
            ++RCI C LC   C   +    +  +          +++   +C+ C LC   CPV   
Sbjct: 341 DQDRCIQCGLCHIACEDTSHQAITAEKDGV-----RHFEVVDAECVGCNLCMHVCPVEQC 395

Query: 118 IVE 120
           I  
Sbjct: 396 ITM 398


>gi|167580299|ref|ZP_02373173.1| ferredoxin [Burkholderia thailandensis TXDOH]
          Length = 177

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 23/64 (35%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ CI C LC   CP  AI                 + I    C  C LC   CPVD I
Sbjct: 83  DEQLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVAELCTGCDLCVPPCPVDCI 132

Query: 119 VEGP 122
              P
Sbjct: 133 AMIP 136



 Score = 35.1 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 14/21 (66%), Positives = 15/21 (71%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C LC +ACPVDAI
Sbjct: 82  IDEQLCIGCTLCMQACPVDAI 102


>gi|147920950|ref|YP_685242.1| pyruvate:ferredoxin oxidoreductase, delta subunit [uncultured
           methanogenic archaeon RC-I]
 gi|110620638|emb|CAJ35916.1| pyruvate:ferredoxin oxidoreductase, delta subunit [uncultured
           methanogenic archaeon RC-I]
          Length = 95

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 6/93 (6%)

Query: 28  FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH 87
           FK + T       G++     G     +    +E+CI CK C   CP  A    +     
Sbjct: 4   FKQRLTTGLVAMPGTSMQYHTGGWRTYKAVISQEKCIGCKRCADSCPDGAPFECA----- 58

Query: 88  DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
               +  ++ I+   C  CG+C   CPVDAI  
Sbjct: 59  -HDGKKKKFCINYDYCKGCGVCAYECPVDAIEM 90


>gi|28898877|ref|NP_798482.1| electron transport complex protein RnfB [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|260362455|ref|ZP_05775396.1| electron transport complex protein RnfB [Vibrio parahaemolyticus
           K5030]
 gi|260879450|ref|ZP_05891805.1| electron transport complex protein RnfB [Vibrio parahaemolyticus
           AN-5034]
 gi|260897153|ref|ZP_05905649.1| electron transport complex protein RnfB [Vibrio parahaemolyticus
           Peru-466]
 gi|260902710|ref|ZP_05911105.1| electron transport complex protein RnfB [Vibrio parahaemolyticus
           AQ4037]
 gi|33301642|sp|Q87MX3|RNFB_VIBPA RecName: Full=Electron transport complex protein rnfB
 gi|28807096|dbj|BAC60366.1| RnfB-related protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308087155|gb|EFO36850.1| electron transport complex protein RnfB [Vibrio parahaemolyticus
           Peru-466]
 gi|308093524|gb|EFO43219.1| electron transport complex protein RnfB [Vibrio parahaemolyticus
           AN-5034]
 gi|308109013|gb|EFO46553.1| electron transport complex protein RnfB [Vibrio parahaemolyticus
           AQ4037]
 gi|308113332|gb|EFO50872.1| electron transport complex protein RnfB [Vibrio parahaemolyticus
           K5030]
          Length = 198

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 25/84 (29%), Gaps = 10/84 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
            +   S               E+ CI C  C   CP  AI   +             + +
Sbjct: 90  VEPEESAHDLDSKVPTVAFIHEDMCIGCTKCIQACPVDAIVGGTK----------AVHTV 139

Query: 99  DMIKCIYCGLCQEACPVDAIVEGP 122
              +C  C LC   CP D I   P
Sbjct: 140 IKDECTGCDLCVAPCPTDCIEMIP 163


>gi|126173591|ref|YP_001049740.1| FAD linked oxidase domain-containing protein [Shewanella baltica
           OS155]
 gi|125996796|gb|ABN60871.1| FAD linked oxidase domain protein [Shewanella baltica OS155]
          Length = 934

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 6/78 (7%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           E +     I  +         +     D  + KCI CG C++ CP  A+   P    AT 
Sbjct: 509 EGMLNPGVILNDDSTVHVKNIKPCPVVDDFVDKCIECGFCEKTCPTSALNFSPRQRIATL 568

Query: 130 TRQELYYDKERLLNNGDR 147
            R+      ERL  +GD+
Sbjct: 569 -RE-----IERLEQSGDK 580



 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 26/75 (34%), Gaps = 16/75 (21%)

Query: 57  PNGEERCIACKLCEAICPAQAITI----------------ESGPRCHDGTRRTVRYDIDM 100
            +  ++CI C  CE  CP  A+                  +SG +      R       +
Sbjct: 536 DDFVDKCIECGFCEKTCPTSALNFSPRQRIATLREIERLEQSGDKAAAAEMRAAAKYDVV 595

Query: 101 IKCIYCGLCQEACPV 115
             C  C LC  ACPV
Sbjct: 596 DTCAACQLCTIACPV 610


>gi|317133223|ref|YP_004092537.1| hydrogenase, Fe-only [Ethanoligenens harbinense YUAN-3]
 gi|315471202|gb|ADU27806.1| hydrogenase, Fe-only [Ethanoligenens harbinense YUAN-3]
          Length = 580

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 31/95 (32%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93
           ++ P+ +      +     L R  +   +C+ C           I   +          +
Sbjct: 119 LDLPYRREMPVSEWNKSFPLIRDFSKCIKCMRCVQVCDKIQDMNIWDIANTGSRTTVDVS 178

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
               ++   C  CG C   CPV A+ E  + + A 
Sbjct: 179 QNRKMEESDCTLCGQCITHCPVGALRERDDTDKAF 213


>gi|317047961|ref|YP_004115609.1| electron transport complex, RnfABCDGE type subunit C [Pantoea sp.
           At-9b]
 gi|316949578|gb|ADU69053.1| electron transport complex, RnfABCDGE type, C subunit [Pantoea sp.
           At-9b]
          Length = 758

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 32/105 (30%), Gaps = 18/105 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ CI C  C   CPA+ +  +       G          +  CI CG C   CP    
Sbjct: 374 EEQSCIRCSACADACPAKLLPQQLY-WYSQGGDHDKARAHHIDDCIECGACAYVCP---- 428

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               N       RQE    K  L         ++      ++  R
Sbjct: 429 ---SNIPLVQYYRQE----KAELRAI------DLEAKRTAEAKAR 460


>gi|223986454|ref|ZP_03636457.1| hypothetical protein HOLDEFILI_03769 [Holdemania filiformis DSM
           12042]
 gi|223961577|gb|EEF66086.1| hypothetical protein HOLDEFILI_03769 [Holdemania filiformis DSM
           12042]
          Length = 364

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E+CI C LC++ CP        G     G +  +   +D   C  C  C + CP  A+
Sbjct: 254 EPEKCIHCGLCDSTCPDMVFQFFPGE--LKGRKTMLNRGLDYRFCKGCLRCVDICPTHAL 311

Query: 119 VEGPNFE 125
             G   E
Sbjct: 312 TRGEEKE 318


>gi|147669302|ref|YP_001214120.1| pyruvate ferredoxin oxidoreductase, delta subunit [Dehalococcoides
           sp. BAV1]
 gi|270308044|ref|YP_003330102.1| 2-oxoacid:ferredoxin oxidoreductase, delta subunit [Dehalococcoides
           sp. VS]
 gi|289432568|ref|YP_003462441.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Dehalococcoides sp. GT]
 gi|146270250|gb|ABQ17242.1| pyruvate ferredoxin oxidoreductase, delta subunit [Dehalococcoides
           sp. BAV1]
 gi|270153936|gb|ACZ61774.1| 2-oxoacid:ferredoxin oxidoreductase, delta subunit [Dehalococcoides
           sp. VS]
 gi|288946288|gb|ADC73985.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Dehalococcoides sp. GT]
          Length = 98

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 10/87 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E G+ S    G+   +   +  ++CI C +C   CP   I                 ++ 
Sbjct: 21  EPGNASQYKTGDWRSQLPIHNFKKCIKCGVCYIFCPEGCINETKEG----------FFEA 70

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFE 125
           D+  C  CG+C   CP  AIV     E
Sbjct: 71  DLFYCKGCGICAHECPTGAIVMKDEEE 97


>gi|187733441|ref|YP_001879524.1| dihydropyrimidine dehydrogenase [Shigella boydii CDC 3083-94]
 gi|187430433|gb|ACD09707.1| dihydroorotate dehydrogenase family protein [Shigella boydii CDC
           3083-94]
          Length = 411

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +       ++C+ C  C   C         G +  + + +T     +  K
Sbjct: 324 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 378 CVGCLLCGHVCPVGCIDLG 396


>gi|332755186|gb|EGJ85550.1| hypothetical protein SFK671_2726 [Shigella flexneri K-671]
          Length = 289

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +       ++C+ C  C   C         G +  + + +T     +  K
Sbjct: 202 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 255

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 256 CVGCLLCGHVCPVGCIELG 274


>gi|312878994|ref|ZP_07738794.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Aminomonas paucivorans DSM 12260]
 gi|310782285|gb|EFQ22683.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Aminomonas paucivorans DSM 12260]
          Length = 597

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 10/66 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L +Y    E+C  C LC  +CPA A+T +              + ID  KC+ CG C  A
Sbjct: 539 LVQYVIDPEKCKGCTLCAKVCPAGAVTGKLKEA----------HVIDQEKCVKCGACFSA 588

Query: 113 CPVDAI 118
           C   AI
Sbjct: 589 CKFGAI 594



 Score = 37.4 bits (85), Expect = 0.62,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 17/40 (42%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +          +  V+Y ID  KC  C LC + CP  A+
Sbjct: 525 HVRDHRCPAGKCKDLVQYVIDPEKCKGCTLCAKVCPAGAV 564


>gi|309781131|ref|ZP_07675869.1| electron transport complex, RnfABCDGE type, B subunit [Ralstonia
           sp. 5_7_47FAA]
 gi|308920197|gb|EFP65856.1| electron transport complex, RnfABCDGE type, B subunit [Ralstonia
           sp. 5_7_47FAA]
          Length = 276

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 23/64 (35%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ERCI C LC   CP  AI                 + +    C  C LC   CPVD I
Sbjct: 90  DPERCIGCTLCIQACPVDAIVGAPK----------AMHTVLEDWCTGCDLCVPPCPVDCI 139

Query: 119 VEGP 122
              P
Sbjct: 140 DMIP 143



 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 14/21 (66%), Positives = 16/21 (76%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID  +CI C LC +ACPVDAI
Sbjct: 89  IDPERCIGCTLCIQACPVDAI 109


>gi|310658331|ref|YP_003936052.1| iron-sulfur-binding protein [Clostridium sticklandii DSM 519]
 gi|308825109|emb|CBH21147.1| putative iron-sulfur-binding protein [Clostridium sticklandii]
          Length = 340

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 22/86 (25%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ++CI+C LC   C  +AI ++                I   KC+ C  C   CPV AIV 
Sbjct: 188 KKCISCGLCVKKCDVEAIEMKEKA------------FIHSEKCVGCAGCIAVCPVGAIVN 235

Query: 121 GP----------NFEFATETRQELYY 136
                        + +A +  ++  Y
Sbjct: 236 DWSEVNFKEKLAEYAYAAQKDKDNVY 261


>gi|302336797|ref|YP_003802003.1| cobyrinic acid ac-diamide synthase [Spirochaeta smaragdinae DSM
           11293]
 gi|301633982|gb|ADK79409.1| Cobyrinic acid ac-diamide synthase [Spirochaeta smaragdinae DSM
           11293]
          Length = 308

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 13/70 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C  C  C + C   AI +E+               +D + C  CG+C   CP  A 
Sbjct: 74  DAGLCTGCGKCISFCRFDAIHMEN-----------SVAQVDPVGCEGCGVCTLVCPSSAF 122

Query: 119 VEGPNFEFAT 128
                 E A 
Sbjct: 123 TL--EEEMAG 130


>gi|294102538|ref|YP_003554396.1| NADH:ubiquinone oxidoreductase, subunit G, iron- sulfur binding
           protein [Aminobacterium colombiense DSM 12261]
 gi|293617518|gb|ADE57672.1| NADH:ubiquinone oxidoreductase, subunit G, iron- sulfur binding
           protein [Aminobacterium colombiense DSM 12261]
          Length = 674

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 4/86 (4%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAIC--PAQAITIESGPRCHDGTRRTVRYDI 98
                 F  + +         RCI C  C  +C     A T++   R  + +  +    +
Sbjct: 126 PYLYSDFHNDASDEDLQVDHNRCILCLRCIRVCGEKVGAHTLDLEKRGWNASVVSDLGKV 185

Query: 99  --DMIKCIYCGLCQEACPVDAIVEGP 122
             +   C+ CG C + CP   I    
Sbjct: 186 LGESDTCVSCGACAQVCPTGTITIRD 211


>gi|282165282|ref|YP_003357667.1| pyruvate synthase delta chain [Methanocella paludicola SANAE]
 gi|282157596|dbj|BAI62684.1| pyruvate synthase delta chain [Methanocella paludicola SANAE]
          Length = 94

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 6/64 (9%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            E+CI CK C   CP  A    +         +  ++ ID   C  CG+C   CPVDAI 
Sbjct: 35  HEKCIGCKRCADSCPDGAPYECA------HDGKKKKFCIDYDYCKGCGICAYECPVDAIN 88

Query: 120 EGPN 123
               
Sbjct: 89  MEKE 92


>gi|291614849|ref|YP_003525006.1| electron transport complex, RnfABCDGE type, C subunit [Sideroxydans
           lithotrophicus ES-1]
 gi|291584961|gb|ADE12619.1| electron transport complex, RnfABCDGE type, C subunit [Sideroxydans
           lithotrophicus ES-1]
          Length = 567

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 28/81 (34%), Gaps = 10/81 (12%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY----DIDMIKCIYCG 107
            L   P     CI C  C  +CPA     E  P+      +   +    +  +  CI CG
Sbjct: 357 RLFPPPPPALPCIRCTRCADVCPA-----ELQPQDLYWFAKAKDFGKAQEYHLFDCIECG 411

Query: 108 LCQEACPVDAIVEGPNFEFAT 128
            C   CP   I     + FA 
Sbjct: 412 ACAYVCPSQ-IPLVQYYRFAK 431


>gi|225175870|ref|ZP_03729863.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168794|gb|EEG77595.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dethiobacter
           alkaliphilus AHT 1]
          Length = 57

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 28/66 (42%), Gaps = 11/66 (16%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 E CI+C  CE  CP  AIT                Y ID   CI CG C E CP
Sbjct: 1   MTHVINEECISCGSCEPECPVDAITEGDDK-----------YVIDPETCIDCGACAEVCP 49

Query: 115 VDAIVE 120
           VDAI E
Sbjct: 50  VDAIHE 55


>gi|163931196|pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
           From Pyrococcus Abysii
          Length = 607

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 5/93 (5%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
           FEKG+   R      +       ++C    LCE +CP   +  E+     +  +      
Sbjct: 9   FEKGAHMVRKMRIAVIDYDKCNPDKCGHF-LCERVCPVNRMGGEAIIIDEENYKPI---- 63

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
           I    C  CG+C   CP +AI      E   E 
Sbjct: 64  IQEASCTGCGICVHKCPFNAISIVNLPEQLDED 96


>gi|157145890|ref|YP_001453209.1| electron transport complex protein RnfC [Citrobacter koseri ATCC
           BAA-895]
 gi|166225089|sp|A8AH10|RNFC_CITK8 RecName: Full=Electron transport complex protein rnfC
 gi|157083095|gb|ABV12773.1| hypothetical protein CKO_01641 [Citrobacter koseri ATCC BAA-895]
          Length = 705

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 35/108 (32%), Gaps = 11/108 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  +I
Sbjct: 373 EEQGCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHNIADCIECGACAWVCP-SSI 430

Query: 119 VEGP--------NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158
                        +  A E ++     K R      R E E    +  
Sbjct: 431 PLVQYFRQEKAEIYAIAQEEKRAAEA-KARFEARQARLEREKAARLER 477


>gi|217974166|ref|YP_002358917.1| FAD linked oxidase domain-containing protein [Shewanella baltica
           OS223]
 gi|217499301|gb|ACK47494.1| FAD linked oxidase domain protein [Shewanella baltica OS223]
          Length = 934

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 6/78 (7%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           E +     I  +         +     D  + KCI CG C++ CP  A+   P    AT 
Sbjct: 509 EGMLNPGVILNDDSTVHVKNIKPCPVVDDFVDKCIECGFCEKTCPTSALNFSPRQRIATL 568

Query: 130 TRQELYYDKERLLNNGDR 147
            R+      ERL  +GD+
Sbjct: 569 -RE-----IERLEQSGDK 580



 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 26/75 (34%), Gaps = 16/75 (21%)

Query: 57  PNGEERCIACKLCEAICPAQAITI----------------ESGPRCHDGTRRTVRYDIDM 100
            +  ++CI C  CE  CP  A+                  +SG +      R       +
Sbjct: 536 DDFVDKCIECGFCEKTCPTSALNFSPRQRIATLREIERLEQSGDKAAAAEMRAAAKYDVV 595

Query: 101 IKCIYCGLCQEACPV 115
             C  C LC  ACPV
Sbjct: 596 DTCAACQLCTIACPV 610


>gi|160874494|ref|YP_001553810.1| FAD linked oxidase domain-containing protein [Shewanella baltica
           OS195]
 gi|160860016|gb|ABX48550.1| FAD linked oxidase domain protein [Shewanella baltica OS195]
 gi|315266733|gb|ADT93586.1| D-lactate dehydrogenase (cytochrome) [Shewanella baltica OS678]
          Length = 934

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 6/78 (7%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           E +     I  +         +     D  + KCI CG C++ CP  A+   P    AT 
Sbjct: 509 EGMLNPGVILNDDSTVHVKNIKPCPVVDDFVDKCIECGFCEKTCPTSALNFSPRQRIATL 568

Query: 130 TRQELYYDKERLLNNGDR 147
            R+      ERL  +GD+
Sbjct: 569 -RE-----IERLEQSGDK 580



 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 26/75 (34%), Gaps = 16/75 (21%)

Query: 57  PNGEERCIACKLCEAICPAQAITI----------------ESGPRCHDGTRRTVRYDIDM 100
            +  ++CI C  CE  CP  A+                  +SG +      R       +
Sbjct: 536 DDFVDKCIECGFCEKTCPTSALNFSPRQRIATLREIERLEQSGDKAAAAEMRAAAKYDVV 595

Query: 101 IKCIYCGLCQEACPV 115
             C  C LC  ACPV
Sbjct: 596 DTCAACQLCTIACPV 610


>gi|16765517|ref|NP_461132.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|62180774|ref|YP_217191.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161613121|ref|YP_001587086.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167991114|ref|ZP_02572213.1| dihydroorotate dehydrogenase family protein [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168229542|ref|ZP_02654600.1| dihydroorotate dehydrogenase family protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|168259472|ref|ZP_02681445.1| dihydroorotate dehydrogenase family protein [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|168466133|ref|ZP_02700003.1| dihydroorotate dehydrogenase family protein [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|168818103|ref|ZP_02830103.1| dihydroorotate dehydrogenase family protein [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|194470352|ref|ZP_03076336.1| dihydroorotate dehydrogenase family protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|197248087|ref|YP_002147158.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|198241985|ref|YP_002216271.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|205353322|ref|YP_002227123.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207857621|ref|YP_002244272.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|238912629|ref|ZP_04656466.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|16420724|gb|AAL21091.1| putative dihydropyrimidine dehydrogenase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|62128407|gb|AAX66110.1| putative dihydropyrimidine dehydrogenase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|161362485|gb|ABX66253.1| hypothetical protein SPAB_00829 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194456716|gb|EDX45555.1| dihydroorotate dehydrogenase family protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|195631189|gb|EDX49749.1| dihydroorotate dehydrogenase family protein [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197211790|gb|ACH49187.1| dihydroorotate dehydrogenase family protein [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197936501|gb|ACH73834.1| dihydroorotate dehydrogenase family protein [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|205273103|emb|CAR38058.1| putative oxidoreductase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205330434|gb|EDZ17198.1| dihydroorotate dehydrogenase family protein [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205335946|gb|EDZ22710.1| dihydroorotate dehydrogenase family protein [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|205345012|gb|EDZ31776.1| dihydroorotate dehydrogenase family protein [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|205351177|gb|EDZ37808.1| dihydroorotate dehydrogenase family protein [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|206709424|emb|CAR33765.1| putative oxidoreductase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|261247401|emb|CBG25226.1| putative oxidoreductase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267994252|gb|ACY89137.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301158748|emb|CBW18260.1| putative oxidoreductase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913177|dbj|BAJ37151.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|320086627|emb|CBY96398.1| Dihydropyrimidine dehydrogenase [NADP+] DHPDHase; DPD;
           Dihydrouracil dehydrogenase; Dihydrothymine
           dehydrogenase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321224841|gb|EFX49904.1| Dihydropyrimidine [Salmonella enterica subsp. enterica serovar
           Typhimurium str. TN061786]
 gi|322715249|gb|EFZ06820.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323130514|gb|ADX17944.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|326624022|gb|EGE30367.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326628411|gb|EGE34754.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
 gi|332989121|gb|AEF08104.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 411

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +      +E+C+ C  C   C         G +  +    +     +  K
Sbjct: 324 IPAEDLDRSYIVYPRINQEKCVGCGRCYISCYDG------GHQAMEWDEHSRTPHCNTEK 377

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 378 CVGCLLCGHVCPVACIDLG 396


>gi|332561493|ref|ZP_08415806.1| pyruvate formate lyase activating enzyme [Rhodobacter sphaeroides
           WS8N]
 gi|332273995|gb|EGJ19313.1| pyruvate formate lyase activating enzyme [Rhodobacter sphaeroides
           WS8N]
          Length = 305

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 16/78 (20%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C  C  +C  QA++ ++                   KCI CG C + CP +A+    
Sbjct: 61  CIGCGRCIPVCSVQALSGDNPGFVDR------------SKCIRCGECTKVCPTEALKRTG 108

Query: 123 N----FEFATETRQELYY 136
                 E   E R++  +
Sbjct: 109 RRMTLAEVMQELRKDAIH 126


>gi|323184230|gb|EFZ69607.1| hypothetical protein ECOK1357_2501 [Escherichia coli 1357]
          Length = 411

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +       ++C+ C  C   C         G +  + + +T     +  K
Sbjct: 324 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 378 CVGCLLCGHVCPVGCIELG 396


>gi|312135943|ref|YP_004003281.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta
           domain-containing protein [Caldicellulosiruptor
           owensensis OL]
 gi|311775994|gb|ADQ05481.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Caldicellulosiruptor owensensis OL]
          Length = 384

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 23/80 (28%), Gaps = 6/80 (7%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
                    G   C  C  C  IC  +AI I              +  I   +CI CG C
Sbjct: 1   MLEKILDLIGNSNCTGCYACYNICEMKAIEIRKTEDGFY------KPVIKKERCIGCGFC 54

Query: 110 QEACPVDAIVEGPNFEFATE 129
              CPV       N E    
Sbjct: 55  ITNCPVLNPEYSNNPEPKFY 74


>gi|255264139|ref|ZP_05343481.1| formate dehydrogenase, alpha subunit [Thalassiobium sp. R2A62]
 gi|255106474|gb|EET49148.1| formate dehydrogenase, alpha subunit [Thalassiobium sp. R2A62]
          Length = 930

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 5/65 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID----MIKCIYCGLCQEACP 114
             + CI C LC   C  +    +       G      +D+        C+ CG C +ACP
Sbjct: 147 NLDACIQCGLCVRACR-EVQVNDVIGMAGRGHDVYPTFDMADPMGASSCVACGECVQACP 205

Query: 115 VDAIV 119
             A++
Sbjct: 206 TGALM 210


>gi|215484255|ref|YP_002326482.1| electron transport complex, RnfABCDGE type, B subunit
           [Acinetobacter baumannii AB307-0294]
 gi|260555960|ref|ZP_05828180.1| electron transport complex [Acinetobacter baumannii ATCC 19606]
 gi|332853651|ref|ZP_08434881.1| electron transport complex, RnfABCDGE type, B subunit
           [Acinetobacter baumannii 6013150]
 gi|332870830|ref|ZP_08439475.1| electron transport complex, RnfABCDGE type, B subunit
           [Acinetobacter baumannii 6013113]
 gi|193076747|gb|ABO11457.2| putative iron-sulfur protein [Acinetobacter baumannii ATCC 17978]
 gi|213987984|gb|ACJ58283.1| electron transport complex, RnfABCDGE type, B subunit
           [Acinetobacter baumannii AB307-0294]
 gi|260410871|gb|EEX04169.1| electron transport complex [Acinetobacter baumannii ATCC 19606]
 gi|332728475|gb|EGJ59849.1| electron transport complex, RnfABCDGE type, B subunit
           [Acinetobacter baumannii 6013150]
 gi|332731931|gb|EGJ63209.1| electron transport complex, RnfABCDGE type, B subunit
           [Acinetobacter baumannii 6013113]
          Length = 263

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 28/87 (32%), Gaps = 10/87 (11%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P E      +  G     +    E+ CI C  C   CP  AI               + +
Sbjct: 66  PAETSVWPVQADGRPQRMKAIIREDECIGCTKCINACPVDAIIGSGK----------LMH 115

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPN 123
            I    C  C LC   CPVD I    +
Sbjct: 116 TILTDLCTGCELCIPPCPVDCIDLVED 142


>gi|167910108|ref|ZP_02497199.1| ferredoxin [Burkholderia pseudomallei 112]
          Length = 170

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 26/81 (32%), Gaps = 10/81 (12%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
             +     E A       E+ CI C LC   CP  AI                 + I   
Sbjct: 66  PLNQAHGVERARPVAFIDEQLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVAE 115

Query: 102 KCIYCGLCQEACPVDAIVEGP 122
            C  C LC   CPVD I   P
Sbjct: 116 LCTGCDLCVPPCPVDCIAMIP 136


>gi|218961952|ref|YP_001741727.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional
           hydrogenase), subunit beta (hymB-like); putative signal
           peptide [Candidatus Cloacamonas acidaminovorans]
 gi|167730609|emb|CAO81521.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional
           hydrogenase), subunit beta (hymB-like); putative signal
           peptide [Candidatus Cloacamonas acidaminovorans]
          Length = 589

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 10/66 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L +Y    E+C+ C LC   CP   I+           R    + ID  KCI CG CQ  
Sbjct: 531 LIQYKINPEKCVGCTLCARKCPVSCISG----------RTKQVHKIDQSKCIKCGACQNV 580

Query: 113 CPVDAI 118
           C  +A+
Sbjct: 581 CKFNAV 586


>gi|167551143|ref|ZP_02344898.1| dihydroorotate dehydrogenase family protein [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205324061|gb|EDZ11900.1| dihydroorotate dehydrogenase family protein [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
          Length = 411

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +      +E+C+ C  C   C         G +  +    +     +  K
Sbjct: 324 IPAEDLDRSYIVYPRINQEKCVGCGRCYISCYDG------GHQAMEWDEHSRTPHCNTEK 377

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 378 CVGCLLCGHVCPVACIDLG 396


>gi|88603354|ref|YP_503532.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methanospirillum hungatei
           JF-1]
 gi|88188816|gb|ABD41813.1| formylmethanofuran dehydrogenase, subunit G [Methanospirillum
           hungatei JF-1]
          Length = 203

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 33/125 (26%), Positives = 43/125 (34%), Gaps = 24/125 (19%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           MR     +  +   E+V  FFL                   ST P FR    L       
Sbjct: 1   MRSILSYIRHMARPEWVKTFFLA-------------KTAPLSTPPHFREFPHLT-----G 42

Query: 61  ERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           + C  C  C  ICPA  AI +    +  +      +  I +  CI CGLC E CP   + 
Sbjct: 43  KECTHCFQCMMICPAPGAIEVIRTDKPGEW-----KPVIHLGHCIRCGLCVEICPELVLD 97

Query: 120 EGPNF 124
            G   
Sbjct: 98  AGRVH 102



 Score = 37.0 bits (84), Expect = 0.94,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 20/72 (27%), Gaps = 8/72 (11%)

Query: 55  RYPNGEERCIACKLCEAICPAQ--------AITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
                   C+ C  C   CP          A    +         + +       KC  C
Sbjct: 117 HITINPVTCMGCGSCTVACPVNKEIDPQLAAKGTSTSDEVIMRVYKGINTVFHEDKCTGC 176

Query: 107 GLCQEACPVDAI 118
             C+E CP  +I
Sbjct: 177 KTCEEQCPTRSI 188


>gi|5911349|gb|AAD55754.1|AF132546_1 pyruvate:ferredoxin oxidoreductase [Spironucleus barkhanus]
          Length = 1182

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 28/94 (29%), Gaps = 19/94 (20%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ------AITIESGPRCHDGTRRTVRY 96
           T+  F+   A++        CI C LC   CP        A   E+            + 
Sbjct: 679 TTKYFKRSIAVQVPVWESATCIQCNLCVVACPHAVIRPYLATDEEAAKAPESVKMLVSKN 738

Query: 97  DID-------------MIKCIYCGLCQEACPVDA 117
            I               + C  CG+C   CP  A
Sbjct: 739 KIVEKYGQFKFAIQASPLDCTGCGVCVNVCPTAA 772


>gi|71279765|ref|YP_268923.1| electron transport complex protein RnfB [Colwellia psychrerythraea
           34H]
 gi|71145505|gb|AAZ25978.1| electron transport complex, RnfABCDGE type, B subunit [Colwellia
           psychrerythraea 34H]
          Length = 189

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 29/85 (34%), Gaps = 10/85 (11%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +    S      +  +     EE CI C  C   CP  AI   +             
Sbjct: 92  QPIDDSHVSGDAPKSNRPKVAFVIEEDCIGCTKCIQACPVDAIIGAAKQ----------M 141

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVE 120
           + I + +C  C LC   CPVD I  
Sbjct: 142 HTIIIDECTGCDLCVAPCPVDCIEM 166


>gi|73669074|ref|YP_305089.1| formate dehydrogenase subunit beta (F420) [Methanosarcina barkeri
           str. Fusaro]
 gi|72396236|gb|AAZ70509.1| formate dehydrogenase, beta subunit (F420) [Methanosarcina barkeri
           str. Fusaro]
          Length = 401

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 6/72 (8%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPA------QAITIESGPRCHDGTRRTVRYDIDMIK 102
           G+  L++  +   RCI C  C  +CPA         TI  G          +RY +    
Sbjct: 277 GKTRLKQLVDETSRCIKCYTCIEVCPALSGTKVSDFTITPGKVPPSFAFHALRYSLVADS 336

Query: 103 CIYCGLCQEACP 114
           CI CG C+E CP
Sbjct: 337 CINCGQCEELCP 348


>gi|121996875|ref|YP_001001662.1| RnfABCDGE type electron transport complex subunit C [Halorhodospira
           halophila SL1]
 gi|121588280|gb|ABM60860.1| electron transport complex, RnfABCDGE type, C subunit
           [Halorhodospira halophila SL1]
          Length = 448

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 21/68 (30%), Gaps = 1/68 (1%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C  +CP      E G          +     +  C  CG C   CP   I  
Sbjct: 374 QPCIRCGRCVEVCPVGLNPAELGRLAAKRQYAVMEERFHLNDCFECGCCSYVCP-SNIPL 432

Query: 121 GPNFEFAT 128
              F  A 
Sbjct: 433 VQYFRIAK 440


>gi|115360706|ref|YP_777843.1| dihydropyrimidine dehydrogenase [Burkholderia ambifaria AMMD]
 gi|115286034|gb|ABI91509.1| dihydroorotate oxidase B, catalytic subunit / dihydrouracil
           dehydrogenase (NAD+) / dihydropyrimidine dehydrogenase
           (NADP+) [Burkholderia ambifaria AMMD]
          Length = 435

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 6/63 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117
            ++RCI C LC   C   +    +  +          +++   +C+ C LC   CPV   
Sbjct: 341 DQDRCIQCGLCHIACEDTSHQAITAEKDGV-----RHFEVVDAECVGCNLCMHVCPVEQC 395

Query: 118 IVE 120
           I  
Sbjct: 396 ITM 398


>gi|325845523|ref|ZP_08168812.1| sulfite reductase, subunit C [Turicibacter sp. HGF1]
 gi|325488427|gb|EGC90847.1| sulfite reductase, subunit C [Turicibacter sp. HGF1]
          Length = 321

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 27/83 (32%), Gaps = 8/83 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +      +  G   +      ++RCI+C  C   C  +A    S             
Sbjct: 145 CPNDCIKARMQDFGIIGMTMPQYDKDRCISCGACVRACKKKATGALSAENFKVLR----- 199

Query: 96  YDIDMIKCIYCGLCQEACPVDAI 118
              D  KCI CG C   CP  A 
Sbjct: 200 ---DGSKCIGCGECVIQCPTAAW 219


>gi|308126604|ref|ZP_05911330.2| putative formate dehydrogenase, alpha subunit [Vibrio
           parahaemolyticus AQ4037]
 gi|308107825|gb|EFO45365.1| putative formate dehydrogenase, alpha subunit [Vibrio
           parahaemolyticus AQ4037]
          Length = 1422

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 29/84 (34%), Gaps = 19/84 (22%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM------------------ 100
              RCI+C  C   C  QA+            R  +R D                     
Sbjct: 636 DANRCISCGQCIQACREQAVHGVLSFVSDKNGRPALRPDDRPRFRSDEKGASCSGLTLMG 695

Query: 101 -IKCIYCGLCQEACPVDAIVEGPN 123
             KC+ CG C +ACP  A+V+  +
Sbjct: 696 DSKCVQCGACVQACPTGAMVDSRD 719


>gi|303247133|ref|ZP_07333408.1| response regulator receiver protein [Desulfovibrio fructosovorans
           JJ]
 gi|302491559|gb|EFL51444.1| response regulator receiver protein [Desulfovibrio fructosovorans
           JJ]
          Length = 1162

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 24/74 (32%), Gaps = 7/74 (9%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR-------TVRYDIDMIKCIYC 106
           R       +C+ C  C  +CP       +      G             Y +D+  C  C
Sbjct: 108 RSPFVDATKCVGCGACAKVCPVSVPNEFNAGLTSRGAVYLPVPHAIPNHYVVDLDACQRC 167

Query: 107 GLCQEACPVDAIVE 120
             C EACP  AI  
Sbjct: 168 WQCYEACPTGAIDF 181



 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 9/58 (15%)

Query: 60   EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
               C  C  C  +CP  A T+++         R V  DI    C  CG C  ACP  A
Sbjct: 1077 HSLCTRCGKCLDVCPYGARTLDTE------HDRIVVDDI---LCQGCGSCASACPNSA 1125



 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 7/28 (25%), Positives = 10/28 (35%)

Query: 98   IDMIKCIYCGLCQEACPVDAIVEGPNFE 125
            +    C  CG C + CP  A       +
Sbjct: 1075 VRHSLCTRCGKCLDVCPYGARTLDTEHD 1102


>gi|303244683|ref|ZP_07331015.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
 gi|302484991|gb|EFL47923.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
          Length = 180

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 2/59 (3%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPVDAIV 119
           CI C  C   CP   I +            T  Y   I+  KC+YC  C + CPV +I 
Sbjct: 65  CIGCGGCANACPTGCIEMVKIEPVKITENYTKEYIPVINSEKCVYCLYCHDFCPVFSIF 123



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 10/26 (38%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPN 123
           +    CI CG C  ACP   I     
Sbjct: 60  VFNELCIGCGGCANACPTGCIEMVKI 85


>gi|291549259|emb|CBL25521.1| Coenzyme F420-reducing hydrogenase, beta subunit [Ruminococcus
           torques L2-14]
          Length = 403

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 47  FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
            +G   + +  N +  C  C +CE +C   AI ++         +      I+  KCI C
Sbjct: 1   MKGHFNMIQVYNNKSECCGCGICETVCTQNAIEMKMDEIGVIYPK------INQEKCIDC 54

Query: 107 GLCQEAC 113
           G C++ C
Sbjct: 55  GACKKIC 61


>gi|261364486|ref|ZP_05977369.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           mucosa ATCC 25996]
 gi|288567418|gb|EFC88978.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria
           mucosa ATCC 25996]
          Length = 282

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 24/64 (37%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   S             + +   +C  CGLC   CPVD I
Sbjct: 76  DEAACIGCTACIRACPVDAIMGASK----------FMHTVISDECTGCGLCLPPCPVDCI 125

Query: 119 VEGP 122
              P
Sbjct: 126 DMIP 129



 Score = 36.2 bits (82), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/22 (59%), Positives = 14/22 (63%)

Query: 98  IDMIKCIYCGLCQEACPVDAIV 119
           ID   CI C  C  ACPVDAI+
Sbjct: 75  IDEAACIGCTACIRACPVDAIM 96


>gi|224540580|ref|ZP_03681119.1| hypothetical protein BACCELL_05494 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224517830|gb|EEF86935.1| hypothetical protein BACCELL_05494 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 1185

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 27/81 (33%), Gaps = 15/81 (18%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG  A     N  E CI C  C  +CP                A               T
Sbjct: 676 RGVAAFVPEWN-AENCIQCNKCAYVCPHASIRPFVLDAEEQKGANFEMLKAVGKVFDGMT 734

Query: 94  VRYDIDMIKCIYCGLCQEACP 114
            R  +D++ C+ CG C + CP
Sbjct: 735 FRIQVDVLDCLGCGNCADICP 755


>gi|94271581|ref|ZP_01291978.1| Pyruvate:ferredoxin (flavodoxin) oxidoreductase [delta
           proteobacterium MLMS-1]
 gi|93450408|gb|EAT01608.1| Pyruvate:ferredoxin (flavodoxin) oxidoreductase [delta
           proteobacterium MLMS-1]
          Length = 980

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 29/109 (26%), Gaps = 26/109 (23%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR- 91
           T    +EK + +                  CI C  C   CP  AI ++         + 
Sbjct: 471 TGTTQYEKRNIAVHVPEWL--------PTNCIQCGRCSLACPHAAIRMKMVKSADLKGKS 522

Query: 92  ---------------RTVRYDIDMIKCIYCGLCQEACP--VDAIVEGPN 123
                          R     +    C  C LC E CP    A+    N
Sbjct: 523 KSFKSVKGVGKQFSGREACLQVFTEDCCGCTLCVEVCPAKTKALKMIDN 571


>gi|55378119|ref|YP_135969.1| ferridoxin protein [Haloarcula marismortui ATCC 43049]
 gi|55230844|gb|AAV46263.1| putative ferridoxin protein [Haloarcula marismortui ATCC 43049]
          Length = 711

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 25/77 (32%), Gaps = 12/77 (15%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           +  + C     C  +CP  AI                        C+ CGLC+E CP  A
Sbjct: 576 DVNDACTLTPTCTNLCPTDAIQRTGEGELAFNH----------ADCVNCGLCEEGCPETA 625

Query: 118 IVEGPNFEFA--TETRQ 132
           I      + +   E R 
Sbjct: 626 ITMHDGLDLSLLPENRG 642


>gi|332098402|gb|EGJ03375.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Shigella
           dysenteriae 155-74]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|332095091|gb|EGJ00124.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Shigella boydii
           3594-74]
          Length = 768

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 240 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 293

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 294 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 353

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 354 RQNPEIKAINMMSRLEHVEEEK 375


>gi|332091187|gb|EGI96276.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Shigella boydii
           5216-82]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|331667746|ref|ZP_08368610.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           TA271]
 gi|331065331|gb|EGI37226.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           TA271]
          Length = 1048

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 520 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 573

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 574 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 633

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 634 RQNPEIKAINMMSRLEHVEEEK 655


>gi|327254042|gb|EGE65671.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           STEC_7v]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQDPEIKAINMMSRLEHVEEEK 781


>gi|325497401|gb|EGC95260.1| putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved
           protein; 4Fe-4S cluster binding protein [Escherichia
           fergusonii ECD227]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQDPEIKAINMMSRLEHVEEEK 781


>gi|324113200|gb|EGC07175.1| ferredoxin oxidoreductase [Escherichia fergusonii B253]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|324006191|gb|EGB75410.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           MS 57-2]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|323976958|gb|EGB72045.1| ferredoxin oxidoreductase [Escherichia coli TW10509]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQDPEIKAINMMSRLEHVEEEK 781


>gi|323963945|gb|EGB59437.1| ferredoxin oxidoreductase [Escherichia coli M863]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQDPEIKAINMMSRLEHVEEEK 781


>gi|323187582|gb|EFZ72891.1| pyruvate:ferredoxin oxidoreductase [Escherichia coli RN587/1]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|323185485|gb|EFZ70846.1| pyruvate:ferredoxin oxidoreductase [Escherichia coli 1357]
 gi|323947683|gb|EGB43686.1| ferredoxin oxidoreductase [Escherichia coli H120]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|320636993|gb|EFX06854.1| Pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str.
           G5101]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|320195638|gb|EFW70263.1| Pyruvate-flavodoxin oxidoreductase [Escherichia coli WV_060327]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|320190150|gb|EFW64801.1| Pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str.
           EC1212]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|317470545|ref|ZP_07929933.1| iron only hydrogenase large subunit domain-containing protein
           [Anaerostipes sp. 3_2_56FAA]
 gi|316902060|gb|EFV23986.1| iron only hydrogenase large subunit domain-containing protein
           [Anaerostipes sp. 3_2_56FAA]
          Length = 650

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 13/86 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            EE+CI C  C+ IC      + +        R           CI CG C   CPV++I
Sbjct: 23  HEEKCIKCGQCKNICKDYISVLGTYSLAETKDR---------AVCINCGQCANVCPVESI 73

Query: 119 VEGPNFEFATETRQELYYDKERLLNN 144
            E   +    +  +E   D E+++  
Sbjct: 74  TETYEY----QQVREAVKDPEKIVIV 95


>gi|312969296|ref|ZP_07783500.1| pyruvate:ferredoxin oxidoreductase [Escherichia coli 2362-75]
 gi|312286080|gb|EFR13996.1| pyruvate:ferredoxin oxidoreductase [Escherichia coli 2362-75]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|312880860|ref|ZP_07740660.1| Cobyrinic acid ac-diamide synthase [Aminomonas paucivorans DSM
           12260]
 gi|310784151|gb|EFQ24549.1| Cobyrinic acid ac-diamide synthase [Aminomonas paucivorans DSM
           12260]
          Length = 292

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 20/64 (31%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +RC  C  C   C   A+                   +    C  CGLC   CP  AI
Sbjct: 74  DPDRCDRCGRCAQACRFGALLCLGAGPV----------RVLEDLCHGCGLCARVCPRGAI 123

Query: 119 VEGP 122
            E P
Sbjct: 124 REEP 127


>gi|311279740|ref|YP_003941971.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Enterobacter cloacae
           SCF1]
 gi|308748935|gb|ADO48687.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Enterobacter cloacae
           SCF1]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPDIKAINMMSRLEHVEEEK 781


>gi|331682842|ref|ZP_08383461.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           H299]
 gi|331080473|gb|EGI51652.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           H299]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|331672943|ref|ZP_08373721.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           TA280]
 gi|331069851|gb|EGI41228.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           TA280]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|331657402|ref|ZP_08358364.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           TA206]
 gi|315297180|gb|EFU56460.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           MS 16-3]
 gi|331055650|gb|EGI27659.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           TA206]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|331652655|ref|ZP_08353666.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           M718]
 gi|331049761|gb|EGI21827.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           M718]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|331646680|ref|ZP_08347783.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           M605]
 gi|330911212|gb|EGH39722.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli AA86]
 gi|331045432|gb|EGI17559.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           M605]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|307309833|ref|ZP_07589483.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Escherichia coli W]
 gi|306909551|gb|EFN40045.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Escherichia coli W]
 gi|315060662|gb|ADT74989.1| fused predicted pyruvate-flavodoxin oxidoreductase: conserved
           protein/conserved protein/FeS binding protein
           [Escherichia coli W]
 gi|323378772|gb|ADX51040.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Escherichia coli
           KO11]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|300937573|ref|ZP_07152388.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           MS 21-1]
 gi|300457400|gb|EFK20893.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           MS 21-1]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQDPEIKAINMMSRLEHVEEEK 781


>gi|300922988|ref|ZP_07139059.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           MS 182-1]
 gi|301326913|ref|ZP_07220207.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           MS 78-1]
 gi|300420717|gb|EFK04028.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           MS 182-1]
 gi|300846465|gb|EFK74225.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           MS 78-1]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|300916621|ref|ZP_07133341.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           MS 115-1]
 gi|300416066|gb|EFJ99376.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           MS 115-1]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|301017799|ref|ZP_07182449.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           MS 69-1]
 gi|300400010|gb|EFJ83548.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           MS 69-1]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|300948435|ref|ZP_07162536.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           MS 116-1]
 gi|300954601|ref|ZP_07167046.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           MS 175-1]
 gi|300318435|gb|EFJ68219.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           MS 175-1]
 gi|300452049|gb|EFK15669.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           MS 116-1]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|300723256|ref|YP_003712556.1| putative 4Fe-4S ferredoxin-type protein [Xenorhabdus nematophila
           ATCC 19061]
 gi|297629773|emb|CBJ90381.1| putative 4Fe-4S ferredoxin-type protein [Xenorhabdus nematophila
           ATCC 19061]
          Length = 207

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 24/73 (32%), Gaps = 10/73 (13%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
             A +     EE CI C  C   CP  AI   +             + +    C  C LC
Sbjct: 104 NPARKVAFIDEENCIGCTKCIQACPVDAIIGAN----------RAMHTVVEDLCTGCDLC 153

Query: 110 QEACPVDAIVEGP 122
              CP D I   P
Sbjct: 154 VAPCPTDCITMIP 166


>gi|294777307|ref|ZP_06742760.1| 4Fe-4S binding domain protein [Bacteroides vulgatus PC510]
 gi|294448836|gb|EFG17383.1| 4Fe-4S binding domain protein [Bacteroides vulgatus PC510]
          Length = 364

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 8/77 (10%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP--VDAIVEG 121
           + C  C  IC   AI++             +   I+   CI CG C+  CP     I   
Sbjct: 1   MGCWACCNICSKNAISMIEDK------FGFLHPQINHNLCIDCGACRTVCPNNTLPIFHI 54

Query: 122 PNFEFATETRQELYYDK 138
               +A  ++ +  Y K
Sbjct: 55  EMSTYAAVSKNDDIYKK 71


>gi|293409742|ref|ZP_06653318.1| pyruvate:ferredoxin oxidoreductase [Escherichia coli B354]
 gi|291470210|gb|EFF12694.1| pyruvate:ferredoxin oxidoreductase [Escherichia coli B354]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|293414733|ref|ZP_06657382.1| pyruvate:ferredoxin oxidoreductase [Escherichia coli B185]
 gi|291434791|gb|EFF07764.1| pyruvate:ferredoxin oxidoreductase [Escherichia coli B185]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|290509259|ref|ZP_06548630.1| electron transport complex protein RnfC [Klebsiella sp. 1_1_55]
 gi|289778653|gb|EFD86650.1| electron transport complex protein RnfC [Klebsiella sp. 1_1_55]
          Length = 551

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 40/112 (35%), Gaps = 13/112 (11%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 371 PQEEKGCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHNLADCIECGACAWVCP-S 428

Query: 117 AIVEGPNF-----EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            I     F     E +   ++E     +R      R+E+   R +  +   R
Sbjct: 429 NIPLVQYFRQEKAEISAIRQEE-----QRAAEAKARFEARQAR-LEREKAAR 474


>gi|290508684|ref|ZP_06548055.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Klebsiella sp.
           1_1_55]
 gi|289778078|gb|EFD86075.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Klebsiella sp.
           1_1_55]
          Length = 1171

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 24/83 (28%), Gaps = 14/83 (16%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDG---------TR 91
             +   AL       + C  C  C  +CP  AI       E       G           
Sbjct: 674 WEKRGIALEVPVWQPDGCTQCNQCAFVCPHAAIRPALLSAEEQDTAPAGLLSKPAQGAKD 733

Query: 92  RTVRYDIDMIKCIYCGLCQEACP 114
                 I  + C  CG C E+CP
Sbjct: 734 YHYHLAISPLDCSGCGNCVESCP 756


>gi|284921282|emb|CBG34348.1| probable pyruvate-flavodoxin oxidoreductase [Escherichia coli 042]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|281178540|dbj|BAI54870.1| putative oxidoreductase Fe-S subunit [Escherichia coli SE15]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|288934482|ref|YP_003438541.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Klebsiella variicola
           At-22]
 gi|255761135|gb|ACU32735.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Klebsiella variicola
           At-22]
          Length = 1171

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 24/83 (28%), Gaps = 14/83 (16%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDG---------TR 91
             +   AL       + C  C  C  +CP  AI       E       G           
Sbjct: 674 WEKRGIALEVPVWQPDGCTQCNQCAFVCPHAAIRPALLNAEEQDTAPAGLLSKPAQGAKD 733

Query: 92  RTVRYDIDMIKCIYCGLCQEACP 114
                 I  + C  CG C E+CP
Sbjct: 734 YHYHLAISPLDCSGCGNCVESCP 756


>gi|256018399|ref|ZP_05432264.1| putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved
           protein; 4Fe-4S cluster binding protein [Shigella sp.
           D9]
 gi|332279453|ref|ZP_08391866.1| pyruvate-flavodoxin oxidoreductase [Shigella sp. D9]
 gi|332101805|gb|EGJ05151.1| pyruvate-flavodoxin oxidoreductase [Shigella sp. D9]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|261402830|ref|YP_003247054.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus vulcanius M7]
 gi|261369823|gb|ACX72572.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus vulcanius M7]
          Length = 654

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 31/88 (35%), Gaps = 7/88 (7%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAIT-------IESGPRCHDGTRRTVRYDI 98
            F+ +   +     E +C  C  C  +CP +          +              +Y I
Sbjct: 229 NFKVKIMKKPRYIDETKCTGCGQCAEVCPIEVPNEFDMGLGMRKAIYKPFPQAVPSKYTI 288

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEF 126
           D   CI CGLC + C  +AI      EF
Sbjct: 289 DKEHCIDCGLCAKVCGPNAIDYDQKPEF 316



 Score = 40.5 bits (93), Expect = 0.083,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 7/64 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +E C  C +C   CP  A  +             +  D+    C  CG C   CP  A+
Sbjct: 580 NKEICGGCGVCVKQCPYGAPRLIEED-------GKLVCDVIAALCKGCGTCVAGCPSGAL 632

Query: 119 VEGP 122
            +  
Sbjct: 633 EQNH 636


>gi|253773629|ref|YP_003036460.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254161451|ref|YP_003044559.1| fused pyruvate-flavodoxin oxidoreductase/hypothetical protein
           [Escherichia coli B str. REL606]
 gi|300927862|ref|ZP_07143424.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           MS 187-1]
 gi|242377149|emb|CAQ31878.1| predicted pyruvate:flavodoxin oxidoreductase [Escherichia coli
           BL21(DE3)]
 gi|253324673|gb|ACT29275.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253973352|gb|ACT39023.1| fused predicted pyruvate-flavodoxin oxidoreductase: conserved
           hypothetical protein/conserved hypothetical protein/FeS
           binding protein [Escherichia coli B str. REL606]
 gi|253977563|gb|ACT43233.1| fused predicted pyruvate-flavodoxin oxidoreductase: conserved
           protein/conserved protein/FeS binding protein
           [Escherichia coli BL21(DE3)]
 gi|300464147|gb|EFK27640.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           MS 187-1]
 gi|323962440|gb|EGB58023.1| ferredoxin oxidoreductase [Escherichia coli H489]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|222033152|emb|CAP75892.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli LF82]
 gi|312945985|gb|ADR26812.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O83:H1 str.
           NRG 857C]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|225026580|ref|ZP_03715772.1| hypothetical protein EUBHAL_00830 [Eubacterium hallii DSM 3353]
 gi|224956072|gb|EEG37281.1| hypothetical protein EUBHAL_00830 [Eubacterium hallii DSM 3353]
          Length = 656

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 29/69 (42%), Gaps = 10/69 (14%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           ALRR+    ERC  C  C   CP  AI+ +              Y ID   CI CG C+ 
Sbjct: 596 ALRRFVISPERCKGCSKCARNCPVGAISGQIKKP----------YVIDDSICIKCGACES 645

Query: 112 ACPVDAIVE 120
           AC   AI  
Sbjct: 646 ACAFHAIHI 654



 Score = 37.0 bits (84), Expect = 0.91,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 13/40 (32%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +              R+ I   +C  C  C   CPV AI
Sbjct: 583 HVVDKKCAAKNCTALRRFVISPERCKGCSKCARNCPVGAI 622


>gi|218704867|ref|YP_002412386.1| putative 2-oxoacid-flavodoxin [Escherichia coli UMN026]
 gi|293404876|ref|ZP_06648868.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli FVEC1412]
 gi|298380520|ref|ZP_06990119.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli FVEC1302]
 gi|300900106|ref|ZP_07118300.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           MS 198-1]
 gi|218431964|emb|CAR12849.1| putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved
           protein; 4Fe-4S cluster binding protein [Escherichia
           coli UMN026]
 gi|291427084|gb|EFF00111.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli FVEC1412]
 gi|298277962|gb|EFI19476.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli FVEC1302]
 gi|300356385|gb|EFJ72255.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           MS 198-1]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|218689337|ref|YP_002397549.1| putative 2-oxoacid-flavodoxin/oxidoreductase [Escherichia coli
           ED1a]
 gi|218426901|emb|CAR07759.2| putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved
           protein; 4Fe-4S cluster binding protein [Escherichia
           coli ED1a]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|218700067|ref|YP_002407696.1| putative 2-oxoacid-flavodoxin/oxidoreductase [Escherichia coli
           IAI39]
 gi|218370053|emb|CAR17829.1| putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved
           protein; 4Fe-4S cluster binding protein [Escherichia
           coli IAI39]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|218553907|ref|YP_002386820.1| putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved
           protein; 4Fe-4S cluster binding protein [Escherichia
           coli IAI1]
 gi|218360675|emb|CAQ98236.1| putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved
           protein; 4Fe-4S cluster binding protein [Escherichia
           coli IAI1]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|218548974|ref|YP_002382765.1| 2-oxoacid-flavodoxin [Escherichia fergusonii ATCC 35469]
 gi|218356515|emb|CAQ89138.1| putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved
           protein; 4Fe-4S cluster binding protein [Escherichia
           fergusonii ATCC 35469]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|218694923|ref|YP_002402590.1| putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved
           protein; 4Fe-4S cluster binding protein [Escherichia
           coli 55989]
 gi|301019431|ref|ZP_07183605.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           MS 196-1]
 gi|218351655|emb|CAU97370.1| putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved
           protein; 4Fe-4S cluster binding protein [Escherichia
           coli 55989]
 gi|299882221|gb|EFI90432.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           MS 196-1]
 gi|309701648|emb|CBJ00955.1| probable pyruvate-flavodoxin oxidoreductase [Escherichia coli ETEC
           H10407]
 gi|323937532|gb|EGB33801.1| ferredoxin oxidoreductase [Escherichia coli E1520]
 gi|323942228|gb|EGB38400.1| ferredoxin oxidoreductase [Escherichia coli E482]
 gi|332343046|gb|AEE56380.1| pyruvate:ferredoxin oxidoreductase NifJ [Escherichia coli UMNK88]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|215486641|ref|YP_002329072.1| fused predicted pyruvate-flavodoxin oxidoreductase: conserved
           protein/conserved protein/FeS binding protein
           [Escherichia coli O127:H6 str. E2348/69]
 gi|215264713|emb|CAS09087.1| fused predicted pyruvate-flavodoxin oxidoreductase: conserved
           protein/conserved protein/FeS binding protein
           [Escherichia coli O127:H6 str. E2348/69]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|209918652|ref|YP_002292736.1| putative oxidoreductase Fe-S subunit [Escherichia coli SE11]
 gi|300820091|ref|ZP_07100265.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           MS 107-1]
 gi|209911911|dbj|BAG76985.1| putative oxidoreductase Fe-S subunit [Escherichia coli SE11]
 gi|300527348|gb|EFK48410.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           MS 107-1]
 gi|324021229|gb|EGB90448.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           MS 117-3]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|254463956|ref|ZP_05077367.1| formate dehydrogenase, alpha subunit [Rhodobacterales bacterium
           Y4I]
 gi|206684864|gb|EDZ45346.1| formate dehydrogenase, alpha subunit [Rhodobacterales bacterium
           Y4I]
          Length = 924

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI----DMIKCIYCGLCQEACP 114
             + CI+C LC   C  +    +       G      +DI        C+ CG C +ACP
Sbjct: 147 NLDACISCGLCVRACR-EVQVNDVIGMAGRGHNAFPTFDIADPMGQSTCVACGECVQACP 205

Query: 115 VDAIV 119
             A++
Sbjct: 206 TGALM 210


>gi|168749008|ref|ZP_02774030.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str.
           EC4113]
 gi|168756033|ref|ZP_02781040.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str.
           EC4401]
 gi|168769434|ref|ZP_02794441.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str.
           EC4486]
 gi|168775177|ref|ZP_02800184.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str.
           EC4196]
 gi|168782882|ref|ZP_02807889.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str.
           EC4076]
 gi|168788322|ref|ZP_02813329.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str.
           EC869]
 gi|168799662|ref|ZP_02824669.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str.
           EC508]
 gi|195938015|ref|ZP_03083397.1| putative oxidoreductase [Escherichia coli O157:H7 str. EC4024]
 gi|208811159|ref|ZP_03252992.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str.
           EC4206]
 gi|208816429|ref|ZP_03257608.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str.
           EC4045]
 gi|208819161|ref|ZP_03259481.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str.
           EC4042]
 gi|209400785|ref|YP_002270406.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str.
           EC4115]
 gi|254792941|ref|YP_003077778.1| fused putative pyruvate-flavodoxin oxidoreductase: conserved
           protein, conserved protein, FeS binding protein
           [Escherichia coli O157:H7 str. TW14359]
 gi|261224340|ref|ZP_05938621.1| fused predicted pyruvate-flavodoxin oxidoreductase: conserved
           protein, conserved protein, FeS binding protein
           [Escherichia coli O157:H7 str. FRIK2000]
 gi|261257406|ref|ZP_05949939.1| fused predicted pyruvate-flavodoxin oxidoreductase: conserved
           protein, conserved protein, FeS binding protein
           [Escherichia coli O157:H7 str. FRIK966]
 gi|291282497|ref|YP_003499315.1| Pyruvate-flavodoxin oxidoreductase [Escherichia coli O55:H7 str.
           CB9615]
 gi|187769350|gb|EDU33194.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str.
           EC4196]
 gi|188016608|gb|EDU54730.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999722|gb|EDU68708.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str.
           EC4076]
 gi|189356860|gb|EDU75279.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str.
           EC4401]
 gi|189361511|gb|EDU79930.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str.
           EC4486]
 gi|189371814|gb|EDU90230.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str.
           EC869]
 gi|189377951|gb|EDU96367.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str.
           EC508]
 gi|208724665|gb|EDZ74373.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str.
           EC4206]
 gi|208733077|gb|EDZ81765.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str.
           EC4045]
 gi|208739284|gb|EDZ86966.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str.
           EC4042]
 gi|209162185|gb|ACI39618.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str.
           EC4115]
 gi|209771308|gb|ACI83966.1| putative oxidoreductase [Escherichia coli]
 gi|209771312|gb|ACI83968.1| putative oxidoreductase [Escherichia coli]
 gi|209771314|gb|ACI83969.1| putative oxidoreductase [Escherichia coli]
 gi|209771316|gb|ACI83970.1| putative oxidoreductase [Escherichia coli]
 gi|254592341|gb|ACT71702.1| fused predicted pyruvate-flavodoxin oxidoreductase: conserved
           protein, conserved protein, FeS binding protein
           [Escherichia coli O157:H7 str. TW14359]
 gi|290762370|gb|ADD56331.1| Pyruvate-flavodoxin oxidoreductase [Escherichia coli O55:H7 str.
           CB9615]
 gi|320642360|gb|EFX11646.1| Pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H- str.
           493-89]
 gi|320647716|gb|EFX16461.1| Pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H- str. H
           2687]
 gi|320653323|gb|EFX21460.1| Pyruvate-flavodoxin oxidoreductase [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320658992|gb|EFX26615.1| Pyruvate-flavodoxin oxidoreductase [Escherichia coli O55:H7 str.
           USDA 5905]
 gi|320663824|gb|EFX31052.1| Pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str.
           LSU-61]
 gi|326340985|gb|EGD64778.1| Pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str.
           1125]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|170683269|ref|YP_001743829.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli SMS-3-5]
 gi|170520987|gb|ACB19165.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli SMS-3-5]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|218779005|ref|YP_002430323.1| hypothetical protein Dalk_1152 [Desulfatibacillum alkenivorans
           AK-01]
 gi|218760389|gb|ACL02855.1| protein of unknown function DUF362 [Desulfatibacillum alkenivorans
           AK-01]
          Length = 385

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 8/95 (8%)

Query: 28  FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH 87
           F       Y       + +      + +     E+C+ C  C   CPA+AI+        
Sbjct: 289 FTPPKNTVYGGVVWPLTSKTVKNWLVEKPAPNPEKCVLCYQCMKTCPAEAIS------KP 342

Query: 88  DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
              ++T  +D    KCI C  C E CP  AI    
Sbjct: 343 REGKKTPVFD--YRKCIRCFCCMEICPEAAIGLKK 375


>gi|91210642|ref|YP_540628.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli UTI89]
 gi|117623652|ref|YP_852565.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli APEC O1]
 gi|218558334|ref|YP_002391247.1| 2-oxoacid-flavodoxin fused oxidoreductase:conserved protein; 4Fe-4S
           cluster binding protein [Escherichia coli S88]
 gi|237705378|ref|ZP_04535859.1| pyruvate-flavodoxin oxidoreductase [Escherichia sp. 3_2_53FAA]
 gi|91072216|gb|ABE07097.1| probable pyruvate-flavodoxin oxidoreductase [Escherichia coli
           UTI89]
 gi|115512776|gb|ABJ00851.1| probable pyruvate-flavodoxin oxidoreductase [Escherichia coli APEC
           O1]
 gi|218365103|emb|CAR02812.1| putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved
           protein; 4Fe-4S cluster binding protein [Escherichia
           coli S88]
 gi|226900135|gb|EEH86394.1| pyruvate-flavodoxin oxidoreductase [Escherichia sp. 3_2_53FAA]
 gi|294490178|gb|ADE88934.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli IHE3034]
 gi|307627077|gb|ADN71381.1| putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved
           protein; 4Fe-4S cluster binding protein [Escherichia
           coli UM146]
 gi|315289083|gb|EFU48481.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           MS 110-3]
 gi|323949049|gb|EGB44941.1| ferredoxin oxidoreductase [Escherichia coli H252]
 gi|323956909|gb|EGB52641.1| ferredoxin oxidoreductase [Escherichia coli H263]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|82544174|ref|YP_408121.1| oxidoreductase, Fe-S subunit [Shigella boydii Sb227]
 gi|81245585|gb|ABB66293.1| putative oxidoreductase, Fe-S subunit [Shigella boydii Sb227]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|74312250|ref|YP_310669.1| putative oxidoreductase, Fe-S subunit [Shigella sonnei Ss046]
 gi|73855727|gb|AAZ88434.1| putative oxidoreductase, Fe-S subunit [Shigella sonnei Ss046]
 gi|323169667|gb|EFZ55334.1| pyruvate:ferredoxin oxidoreductase [Shigella sonnei 53G]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|15801750|ref|NP_287768.1| putative oxidoreductase, Fe-S subunit [Escherichia coli O157:H7
           EDL933]
 gi|12515322|gb|AAG56382.1|AE005366_8 putative oxidoreductase, Fe-S subunit [Escherichia coli O157:H7
           str. EDL933]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|16129339|ref|NP_415896.1| fused predicted pyruvate-flavodoxin oxidoreductase: conserved
           protein/conserved protein/FeS binding protein
           [Escherichia coli str. K-12 substr. MG1655]
 gi|89108224|ref|AP_002004.1| fused predicted Fe-S subunit of pyruvate-flavodoxin oxidoreductase
           [Escherichia coli str. K-12 substr. W3110]
 gi|170081055|ref|YP_001730375.1| fused pyruvate-flavodoxin oxidoreductase: protein; protein; FeS
           binding protein [Escherichia coli str. K-12 substr.
           DH10B]
 gi|238900607|ref|YP_002926403.1| fused putative pyruvate-flavodoxin oxidoreductase: hypothetical
           protein [Escherichia coli BW2952]
 gi|2506913|sp|P52647|NIFJ_ECOLI RecName: Full=Probable pyruvate-flavodoxin oxidoreductase
 gi|1742250|dbj|BAA14982.1| fused predicted Fe-S subunit of pyruvate-flavodoxin oxidoreductase
           [Escherichia coli str. K12 substr. W3110]
 gi|1787642|gb|AAC74460.1| fused predicted pyruvate-flavodoxin oxidoreductase: conserved
           protein/conserved protein/FeS binding protein
           [Escherichia coli str. K-12 substr. MG1655]
 gi|169888890|gb|ACB02597.1| fused predicted pyruvate-flavodoxin oxidoreductase: conserved
           protein; conserved protein; FeS binding protein
           [Escherichia coli str. K-12 substr. DH10B]
 gi|238861238|gb|ACR63236.1| fused predicted pyruvate-flavodoxin oxidoreductase: conserved
           protein/conserved protein/FeS binding protein
           [Escherichia coli BW2952]
 gi|260449493|gb|ACX39915.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Escherichia coli DH1]
 gi|315136019|dbj|BAJ43178.1| fused putative pyruvate-flavodoxinoxidoreductase: hypothetical
           protein [Escherichia coli DH1]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|15831254|ref|NP_310027.1| oxidoreductase [Escherichia coli O157:H7 str. Sakai]
 gi|168763116|ref|ZP_02788123.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str.
           EC4501]
 gi|217329277|ref|ZP_03445357.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str.
           TW14588]
 gi|13361465|dbj|BAB35423.1| putative oxidoreductase [Escherichia coli O157:H7 str. Sakai]
 gi|189366638|gb|EDU85054.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str.
           EC4501]
 gi|209771310|gb|ACI83967.1| putative oxidoreductase [Escherichia coli]
 gi|217317716|gb|EEC26144.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str.
           TW14588]
 gi|326340735|gb|EGD64532.1| Pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str.
           1044]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|194431874|ref|ZP_03064164.1| pyruvate-flavodoxin oxidoreductase [Shigella dysenteriae 1012]
 gi|194419782|gb|EDX35861.1| pyruvate-flavodoxin oxidoreductase [Shigella dysenteriae 1012]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|194436630|ref|ZP_03068731.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli 101-1]
 gi|194424662|gb|EDX40648.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli 101-1]
 gi|323973602|gb|EGB68784.1| ferredoxin oxidoreductase [Escherichia coli TA007]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|191165148|ref|ZP_03026992.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli B7A]
 gi|293433767|ref|ZP_06662195.1| pyruvate:ferredoxin oxidoreductase [Escherichia coli B088]
 gi|309797096|ref|ZP_07691494.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           MS 145-7]
 gi|190904920|gb|EDV64625.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli B7A]
 gi|291324586|gb|EFE64008.1| pyruvate:ferredoxin oxidoreductase [Escherichia coli B088]
 gi|308119266|gb|EFO56528.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           MS 145-7]
 gi|320199388|gb|EFW73979.1| Pyruvate-flavodoxin oxidoreductase [Escherichia coli EC4100B]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|188491773|ref|ZP_02999043.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli 53638]
 gi|188486972|gb|EDU62075.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli 53638]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|110641583|ref|YP_669313.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli 536]
 gi|191171078|ref|ZP_03032629.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli F11]
 gi|300972120|ref|ZP_07171832.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           MS 200-1]
 gi|110343175|gb|ABG69412.1| probable pyruvate-flavodoxin oxidoreductase [Escherichia coli 536]
 gi|190908810|gb|EDV68398.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli F11]
 gi|300309214|gb|EFJ63734.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           MS 200-1]
 gi|324011369|gb|EGB80588.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           MS 60-1]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|157160859|ref|YP_001458177.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli HS]
 gi|170020287|ref|YP_001725241.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing
           protein [Escherichia coli ATCC 8739]
 gi|312971545|ref|ZP_07785720.1| pyruvate:ferredoxin oxidoreductase [Escherichia coli 1827-70]
 gi|157066539|gb|ABV05794.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli HS]
 gi|169755215|gb|ACA77914.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Escherichia coli ATCC 8739]
 gi|310336142|gb|EFQ01342.1| pyruvate:ferredoxin oxidoreductase [Escherichia coli 1827-70]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|157155711|ref|YP_001462656.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli E24377A]
 gi|193062584|ref|ZP_03043678.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli E22]
 gi|193067006|ref|ZP_03047975.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli E110019]
 gi|260843695|ref|YP_003221473.1| fused putative pyruvate-flavodoxin oxidoreductase: hypothetical
           protein/hypothetical protein/FeS binding protein
           [Escherichia coli O103:H2 str. 12009]
 gi|300825298|ref|ZP_07105380.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           MS 119-7]
 gi|331677225|ref|ZP_08377907.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           H591]
 gi|157077741|gb|ABV17449.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli E24377A]
 gi|192931706|gb|EDV84306.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli E22]
 gi|192959596|gb|EDV90030.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli E110019]
 gi|257758842|dbj|BAI30339.1| fused predicted pyruvate-flavodoxin oxidoreductase: conserved
           protein/conserved protein/FeS binding protein
           [Escherichia coli O103:H2 str. 12009]
 gi|300522225|gb|EFK43294.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           MS 119-7]
 gi|323162440|gb|EFZ48292.1| pyruvate:ferredoxin oxidoreductase [Escherichia coli E128010]
 gi|324117639|gb|EGC11544.1| ferredoxin oxidoreductase [Escherichia coli E1167]
 gi|331075076|gb|EGI46389.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           H591]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|187733332|ref|YP_001880205.1| pyruvate-flavodoxin oxidoreductase [Shigella boydii CDC 3083-94]
 gi|187430324|gb|ACD09598.1| pyruvate-flavodoxin oxidoreductase [Shigella boydii CDC 3083-94]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|332702837|ref|ZP_08422925.1| electron transport complex protein RnfC [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332552986|gb|EGJ50030.1| electron transport complex protein RnfC [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 375

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 1/55 (1%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            C+ C  C  ICP++            G  +    D  +  C+ CGLC   CP  
Sbjct: 301 PCMECGKCVRICPSRVDPGLLSGCAEFGLLKQAV-DNYIDACMECGLCAYVCPTH 354


>gi|330830240|ref|YP_004393192.1| putative NADH:ubiquinone oxidoreductase subunit RnfB [Aeromonas
           veronii B565]
 gi|328805376|gb|AEB50575.1| Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Aeromonas
           veronii B565]
          Length = 192

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 10/72 (13%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
              +     E++CI C  C   CP  AI   +             + +   +C  C LC 
Sbjct: 104 PVKKVAFIHEDQCIGCTKCIQACPVDAIVGATK----------AMHTVIANECTGCDLCV 153

Query: 111 EACPVDAIVEGP 122
           + CP D I   P
Sbjct: 154 DPCPTDCIEMIP 165


>gi|307311274|ref|ZP_07590918.1| dihydroorotate dehydrogenase family protein [Escherichia coli W]
 gi|306908780|gb|EFN39277.1| dihydroorotate dehydrogenase family protein [Escherichia coli W]
 gi|315061456|gb|ADT75783.1| dihydropyrimidine dehydrogenase, NADH-dependent, subunit B
           [Escherichia coli W]
 gi|323377963|gb|ADX50231.1| dihydroorotate dehydrogenase family protein [Escherichia coli KO11]
          Length = 411

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +       ++C+ C  C   C         G +  + + +T     +  K
Sbjct: 324 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 378 CVGCLLCGHVCPVGCIELG 396


>gi|304409462|ref|ZP_07391082.1| D-lactate dehydrogenase (cytochrome) [Shewanella baltica OS183]
 gi|307303820|ref|ZP_07583573.1| D-lactate dehydrogenase (cytochrome) [Shewanella baltica BA175]
 gi|304351980|gb|EFM16378.1| D-lactate dehydrogenase (cytochrome) [Shewanella baltica OS183]
 gi|306912718|gb|EFN43141.1| D-lactate dehydrogenase (cytochrome) [Shewanella baltica BA175]
          Length = 934

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 6/78 (7%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           E +     I  +         +     D  + KCI CG C++ CP  A+   P    AT 
Sbjct: 509 EGMLNPGVILNDDSTVHVKNIKPCPVVDDFVDKCIECGFCEKTCPTSALNFSPRQRIATL 568

Query: 130 TRQELYYDKERLLNNGDR 147
            R+      ERL  +GD+
Sbjct: 569 -RE-----IERLEQSGDK 580



 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 26/75 (34%), Gaps = 16/75 (21%)

Query: 57  PNGEERCIACKLCEAICPAQAITI----------------ESGPRCHDGTRRTVRYDIDM 100
            +  ++CI C  CE  CP  A+                  +SG +      R       +
Sbjct: 536 DDFVDKCIECGFCEKTCPTSALNFSPRQRIATLREIERLEQSGDKAAAAEMRAAAKYDVV 595

Query: 101 IKCIYCGLCQEACPV 115
             C  C LC  ACPV
Sbjct: 596 DTCAACQLCTIACPV 610


>gi|224537012|ref|ZP_03677551.1| hypothetical protein BACCELL_01888 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521379|gb|EEF90484.1| hypothetical protein BACCELL_01888 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 494

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 19/64 (29%), Gaps = 8/64 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              RCI C  C   C                        ID   C+ CGLC   CP +AI
Sbjct: 437 DSRRCIHCGRCYISCLDGGHQAIG--------WEKRTPMIDKSLCVGCGLCTLVCPTEAI 488

Query: 119 VEGP 122
               
Sbjct: 489 SLVN 492


>gi|242279479|ref|YP_002991608.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
 gi|242122373|gb|ACS80069.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
          Length = 142

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 9/76 (11%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R     ++    +E C+ C +C A+CP  A+++E   R             D+ KC  CG
Sbjct: 75  RLIPVAQKIARDDESCMHCGMCLAMCPTGALSLEKDTRLVL---------FDLEKCTACG 125

Query: 108 LCQEACPVDAIVEGPN 123
           LC + CPV A+   P 
Sbjct: 126 LCTKVCPVRAMEVDPQ 141


>gi|209919605|ref|YP_002293689.1| dihydropyrimidine dehydrogenase [Escherichia coli SE11]
 gi|256017685|ref|ZP_05431550.1| dihydropyrimidine dehydrogenase [Shigella sp. D9]
 gi|260856120|ref|YP_003230011.1| putative oxidoreductase [Escherichia coli O26:H11 str. 11368]
 gi|260868849|ref|YP_003235251.1| putative oxidoreductase [Escherichia coli O111:H- str. 11128]
 gi|300822593|ref|ZP_07102731.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 119-7]
 gi|300902204|ref|ZP_07120204.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 84-1]
 gi|301306535|ref|ZP_07212599.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 124-1]
 gi|309793025|ref|ZP_07687453.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 145-7]
 gi|331668846|ref|ZP_08369694.1| putative oxidoreductase [Escherichia coli TA271]
 gi|331678095|ref|ZP_08378770.1| putative oxidoreductase [Escherichia coli H591]
 gi|209912864|dbj|BAG77938.1| putative dihydropyrimidine dehydrogenase [Escherichia coli SE11]
 gi|257754769|dbj|BAI26271.1| predicted oxidoreductase [Escherichia coli O26:H11 str. 11368]
 gi|257765205|dbj|BAI36700.1| predicted oxidoreductase [Escherichia coli O111:H- str. 11128]
 gi|300405723|gb|EFJ89261.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 84-1]
 gi|300524793|gb|EFK45862.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 119-7]
 gi|300838236|gb|EFK65996.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 124-1]
 gi|308123311|gb|EFO60573.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 145-7]
 gi|315255341|gb|EFU35309.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 85-1]
 gi|323152183|gb|EFZ38473.1| hypothetical protein ECEPECA14_5793 [Escherichia coli EPECa14]
 gi|323176957|gb|EFZ62547.1| hypothetical protein ECOK1180_4323 [Escherichia coli 1180]
 gi|323944963|gb|EGB41028.1| dihydroorotate dehydrogenase [Escherichia coli H120]
 gi|324020615|gb|EGB89834.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 117-3]
 gi|331064040|gb|EGI35951.1| putative oxidoreductase [Escherichia coli TA271]
 gi|331074555|gb|EGI45875.1| putative oxidoreductase [Escherichia coli H591]
          Length = 411

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +       ++C+ C  C   C         G +  + + +T     +  K
Sbjct: 324 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 378 CVGCLLCGHVCPVGCIELG 396


>gi|169796778|ref|YP_001714571.1| hypothetical protein ABAYE2765 [Acinetobacter baumannii AYE]
 gi|213156829|ref|YP_002318490.1| electron transport complex, rnfaBcdge type, B subunit
           [Acinetobacter baumannii AB0057]
 gi|239502943|ref|ZP_04662253.1| electron transport complex, rnfaBcdge type, B subunit
           [Acinetobacter baumannii AB900]
 gi|301345598|ref|ZP_07226339.1| electron transport complex, rnfaBcdge type, B subunit
           [Acinetobacter baumannii AB056]
 gi|301510039|ref|ZP_07235276.1| electron transport complex, rnfaBcdge type, B subunit
           [Acinetobacter baumannii AB058]
 gi|301597671|ref|ZP_07242679.1| electron transport complex, rnfaBcdge type, B subunit
           [Acinetobacter baumannii AB059]
 gi|169149705|emb|CAM87596.1| conserved hypothetical protein [Acinetobacter baumannii AYE]
 gi|213055989|gb|ACJ40891.1| electron transport complex, rnfaBcdge type, B subunit
           [Acinetobacter baumannii AB0057]
          Length = 263

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 28/87 (32%), Gaps = 10/87 (11%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P E      +  G     +    E+ CI C  C   CP  AI               + +
Sbjct: 66  PAETSVWPVQADGRPQRMKAIIREDECIGCTKCINACPVDAIIGSGK----------LMH 115

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPN 123
            I    C  C LC   CPVD I    +
Sbjct: 116 TILTDLCTGCELCIPPCPVDCIDLVED 142


>gi|315615386|gb|EFU96018.1| uncharacterized protein yeiA [Escherichia coli 3431]
          Length = 399

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +       ++C+ C  C   C         G +  + + +T     +  K
Sbjct: 312 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 365

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 366 CVGCLLCGHVCPVGCIELG 384


>gi|291287597|ref|YP_003504413.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290884757|gb|ADD68457.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 1195

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 30/114 (26%), Gaps = 28/114 (24%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGP----------------RCHDGTRRT 93
             A+       E CI C +C  +CP  AI                      +  D     
Sbjct: 692 NIAVTIPEWESELCIQCGICSFVCPHAAIRTTVYEPSCLENAPSTFKSMDAKGKDFAGMK 751

Query: 94  VRYDIDMIKCIYCGLCQEACPV--------DAIVEGPNFEFATETRQELYYDKE 139
               +    C  CG C   CP          AI   P      E R E   + +
Sbjct: 752 FTVQVAPEDCTGCGACVFNCPAKSKTDPTHKAINMKPQ----VERRDEEVVNFD 801


>gi|290475319|ref|YP_003468207.1| putative 4Fe-4S ferredoxin-type protein [Xenorhabdus bovienii
           SS-2004]
 gi|289174640|emb|CBJ81434.1| putative 4Fe-4S ferredoxin-type protein [Xenorhabdus bovienii
           SS-2004]
          Length = 205

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 28/90 (31%), Gaps = 10/90 (11%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
                  A +     EE CI C  C   CP  AI   +             + +    C 
Sbjct: 99  DDSVQNPARKVAFIDEENCIGCTKCIQACPVDAIIGAN----------RAIHTVVEDLCT 148

Query: 105 YCGLCQEACPVDAIVEGPNFEFATETRQEL 134
            C LC   CP D I   P     +  + +L
Sbjct: 149 GCDLCVAPCPTDCITMIPVATTTSNWKWDL 178


>gi|251778561|ref|ZP_04821481.1| sulfite reductase, subunit C [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243082876|gb|EES48766.1| sulfite reductase, subunit C [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 320

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 24/88 (27%), Gaps = 8/88 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +         G   +      ++RC++C  C   C                     +
Sbjct: 145 CPNDCIKARMHDFGIIGMTEPQYDKDRCVSCGACVRAC--------KKKSVDSLKAVNYK 196

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPN 123
              +  KCI CG C   CP  A      
Sbjct: 197 VVRNEEKCIGCGECVINCPTGAWTRSKE 224


>gi|239817041|ref|YP_002945951.1| formate dehydrogenase, subunit alpha [Variovorax paradoxus S110]
 gi|239803618|gb|ACS20685.1| formate dehydrogenase, alpha subunit [Variovorax paradoxus S110]
          Length = 957

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 3/99 (3%)

Query: 24  LRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG 83
           L  + K       P  K     + + + +        + CI C  C   C  + +    G
Sbjct: 126 LSAWAKKLDIAVRPELKALRREQPKADISHPAMAVNLDACIQCNRCVRACREEQVNDVIG 185

Query: 84  PRCHDGTRRTVRY---DIDMIKCIYCGLCQEACPVDAIV 119
                G  + V      +    C+ CG C +ACP  A++
Sbjct: 186 YALRGGDSKIVFDLDDPMGDSTCVACGECVQACPTGALM 224


>gi|218705675|ref|YP_002413194.1| dihydropyrimidine dehydrogenase [Escherichia coli UMN026]
 gi|293405615|ref|ZP_06649607.1| yeiA protein [Escherichia coli FVEC1412]
 gi|298381296|ref|ZP_06990895.1| yeiA protein [Escherichia coli FVEC1302]
 gi|300897797|ref|ZP_07116190.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 198-1]
 gi|331663649|ref|ZP_08364559.1| putative oxidoreductase [Escherichia coli TA143]
 gi|218432772|emb|CAR13666.1| putative oxidoreductase subunit [Escherichia coli UMN026]
 gi|291427823|gb|EFF00850.1| yeiA protein [Escherichia coli FVEC1412]
 gi|298278738|gb|EFI20252.1| yeiA protein [Escherichia coli FVEC1302]
 gi|300358512|gb|EFJ74382.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 198-1]
 gi|331059448|gb|EGI31425.1| putative oxidoreductase [Escherichia coli TA143]
          Length = 411

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +       ++C+ C  C   C         G +  + + +T     +  K
Sbjct: 324 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 378 CVGCLLCGHVCPVGCIELG 396


>gi|254476176|ref|ZP_05089562.1| formate dehydrogenase, alpha subunit [Ruegeria sp. R11]
 gi|214030419|gb|EEB71254.1| formate dehydrogenase, alpha subunit [Ruegeria sp. R11]
          Length = 924

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID----MIKCIYCGLCQEACP 114
             + CI+C LC   C  +    +       G      +DI        C+ CG C +ACP
Sbjct: 147 NLDACISCNLCVRACR-EVQVNDVIGMAGRGHDAYPVFDIADPMGQSSCVACGECVQACP 205

Query: 115 VDAIV 119
             A++
Sbjct: 206 TGALM 210


>gi|189466801|ref|ZP_03015586.1| hypothetical protein BACINT_03177 [Bacteroides intestinalis DSM
           17393]
 gi|189435065|gb|EDV04050.1| hypothetical protein BACINT_03177 [Bacteroides intestinalis DSM
           17393]
          Length = 1185

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 27/81 (33%), Gaps = 15/81 (18%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG  A     N  E CI C  C  +CP                A               T
Sbjct: 676 RGVAAFVPEWN-AENCIQCNKCAYVCPHASIRPFVLDAEEQKGANFEMLKAVGKVFDGMT 734

Query: 94  VRYDIDMIKCIYCGLCQEACP 114
            R  +D++ C+ CG C + CP
Sbjct: 735 FRIQVDVLDCLGCGNCADICP 755


>gi|182625172|ref|ZP_02952948.1| aminotransferase, class V [Clostridium perfringens D str. JGS1721]
 gi|177909631|gb|EDT72065.1| aminotransferase, class V [Clostridium perfringens D str. JGS1721]
          Length = 272

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 15/91 (16%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                  +CI C LC   C    I +  G              I    C+ CG C   CP
Sbjct: 1   MMNVDTSKCIGCTLCMQDCIVSDIEMLDGKAH-----------IKNESCMECGHCIAICP 49

Query: 115 VDAIVEGPNFEFA---TETRQELYYDKERLL 142
            +A+ +  +++ +      ++    D +RLL
Sbjct: 50  KEAVSDS-DYDMSKIQEYKKESFDIDSDRLL 79


>gi|172035869|ref|YP_001802370.1| pyruvate oxidoreductase [Cyanothece sp. ATCC 51142]
 gi|171697323|gb|ACB50304.1| pyruvate oxidoreductase [Cyanothece sp. ATCC 51142]
          Length = 1210

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 28/105 (26%), Gaps = 26/105 (24%)

Query: 58  NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTV----RYDID 99
             E+ C+ C  C  +CP                A          D   +         + 
Sbjct: 688 WDEDVCVQCGKCVLVCPHAVIRSKVYEEAALSNAPESFKSADAKDLDWKKTELKFTIQVA 747

Query: 100 MIKCIYCGLCQEACPV--------DAIVEGPNFEFATETRQELYY 136
              C  CG+C + CP          AI   P      + R+   Y
Sbjct: 748 AEDCTGCGVCVDVCPAKNKSQPKLKAINMAPQLPIREQERENWDY 792


>gi|167771609|ref|ZP_02443662.1| hypothetical protein ANACOL_02981 [Anaerotruncus colihominis DSM
           17241]
 gi|167666249|gb|EDS10379.1| hypothetical protein ANACOL_02981 [Anaerotruncus colihominis DSM
           17241]
          Length = 274

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 11/60 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +  CI CK CE  C   AIT+                 ID  KC+ CG C  ACP  AI
Sbjct: 212 CKNGCIGCKKCERTCEHGAITVTDNLAS-----------IDPEKCVNCGNCVTACPTGAI 260



 Score = 36.2 bits (82), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 5/70 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEAC 113
            +  C+ C +C   CP Q IT+               +      +    CI C  C+  C
Sbjct: 167 DKAACVGCGMCAKACPNQLITVIPASSTVYVGCSSHDKGAFTRKVCKNGCIGCKKCERTC 226

Query: 114 PVDAIVEGPN 123
              AI    N
Sbjct: 227 EHGAITVTDN 236



 Score = 33.9 bits (76), Expect = 7.4,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 11/65 (16%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           +    C+    C   C   AI+I  G              ID   C+ CG+C +ACP   
Sbjct: 137 SCSHGCLGYGDCINACQYGAISIVDGIAV-----------IDKAACVGCGMCAKACPNQL 185

Query: 118 IVEGP 122
           I   P
Sbjct: 186 ITVIP 190


>gi|119473030|ref|ZP_01614852.1| electron transport complex protein RnfC [Alteromonadales bacterium
           TW-7]
 gi|119444608|gb|EAW25920.1| electron transport complex protein RnfC [Alteromonadales bacterium
           TW-7]
          Length = 780

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 4/103 (3%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C  C   CPA  +  +               + ++  CI CG C   CP   I    
Sbjct: 377 CIRCSACADACPAS-LLPQQLQWFAKSKEYDKLQEHNLFDCIECGACAYVCP-SEIPLVQ 434

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVR--NIVTDSPYR 163
            +  A    +E   +K +     +R+++   R      D   R
Sbjct: 435 YYRVAKVEIKEQQAEKIKADRAKERFDARKERLEREQEDRKNR 477


>gi|114777066|ref|ZP_01452086.1| electron transport complex protein RnfC [Mariprofundus ferrooxydans
           PV-1]
 gi|114552587|gb|EAU55047.1| electron transport complex protein RnfC [Mariprofundus ferrooxydans
           PV-1]
          Length = 521

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 32/93 (34%), Gaps = 4/93 (4%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ-AITIESGPRCHDGTRRT 93
           + P  K +       E +       E+ CI C  C   CPA     + +     D   + 
Sbjct: 358 DVPVVKSTNGMLAMLEASFMGGHTQEQACIRCGHCSEACPAGLVPNLLADQCRSDQFEKA 417

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
             YD+    CI CG C   CP   I     F +
Sbjct: 418 ESYDLF--DCIECGACSYVCP-SNIPLVHYFRY 447


>gi|220932673|ref|YP_002509581.1| Cobyrinic acid ac-diamide synthase [Halothermothrix orenii H 168]
 gi|219993983|gb|ACL70586.1| Cobyrinic acid ac-diamide synthase [Halothermothrix orenii H 168]
          Length = 288

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 14/62 (22%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + CI C  C  +C   AIT                ++I+ IKC  CG C   CP DA+
Sbjct: 64  NPDLCIDCGYCRQVCNFNAITPG--------------FEINPIKCEGCGTCVAMCPQDAL 109

Query: 119 VE 120
             
Sbjct: 110 EL 111



 Score = 34.3 bits (77), Expect = 6.3,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEF 126
           +   CI CG C++ C  +AI   P FE 
Sbjct: 64  NPDLCIDCGYCRQVCNFNAI--TPGFEI 89


>gi|331091232|ref|ZP_08340073.1| hypothetical protein HMPREF9477_00716 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330404679|gb|EGG84218.1| hypothetical protein HMPREF9477_00716 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 263

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 11/84 (13%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P+E+         +         +  CI CK+C+ +C   AIT+E              
Sbjct: 191 VPYEQKHLVQCNSKDKGKDVMSACKAGCIGCKMCQKVCEYDAITVEDNIAH--------- 241

Query: 96  YDIDMIKCIYCGLCQEACPVDAIV 119
             ID  KC  CG C E CP   I+
Sbjct: 242 --IDPEKCTNCGACAEKCPKKIIM 263



 Score = 35.1 bits (79), Expect = 3.2,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 5/70 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCH-----DGTRRTVRYDIDMIKCIYCGLCQEAC 113
            +E C AC  C A+CP   I +    + H        +           CI C +CQ+ C
Sbjct: 169 DKEACKACGKCIAVCPQNLIELVPYEQKHLVQCNSKDKGKDVMSACKAGCIGCKMCQKVC 228

Query: 114 PVDAIVEGPN 123
             DAI    N
Sbjct: 229 EYDAITVEDN 238



 Score = 35.1 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 22/66 (33%), Gaps = 11/66 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            +    C     C   CP  AI IE+G              +D   C  CG C   CP +
Sbjct: 138 KSCNYGCHGFGTCVKACPFDAIHIENGVAV-----------VDKEACKACGKCIAVCPQN 186

Query: 117 AIVEGP 122
            I   P
Sbjct: 187 LIELVP 192


>gi|300918787|ref|ZP_07135356.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 115-1]
 gi|300414030|gb|EFJ97340.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 115-1]
          Length = 411

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +       ++C+ C  C   C         G +  + + +T     +  K
Sbjct: 324 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 378 CVGCLLCGHVCPVGCIELG 396


>gi|167745819|ref|ZP_02417946.1| hypothetical protein ANACAC_00513 [Anaerostipes caccae DSM 14662]
 gi|167654850|gb|EDR98979.1| hypothetical protein ANACAC_00513 [Anaerostipes caccae DSM 14662]
          Length = 650

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 13/86 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            EE+CI C  C+ IC      + +        R           CI CG C   CPV++I
Sbjct: 23  HEEKCIKCGQCKNICKDYISVLGTYSLAETKDR---------AVCINCGQCANVCPVESI 73

Query: 119 VEGPNFEFATETRQELYYDKERLLNN 144
            E   +    +  +E   D E+++  
Sbjct: 74  TETYEY----QQVREAVKDPEKIVIV 95


>gi|218778152|ref|YP_002429470.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218759536|gb|ACL02002.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 434

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 16/100 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +E+C  C  C   CP  AI + +    +   +R  + +I++  CI CG+C   C   A 
Sbjct: 287 EDEKCTGCGKCAKACPINAIEMVADGDPNT--KRKKKPEINLELCIGCGVCGLDCKPSAC 344

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158
              P        R++     E        +E  I++++  
Sbjct: 345 QLIP--------RKKRVITPET------TFERVILQSLER 370



 Score = 41.2 bits (95), Expect = 0.046,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 16/24 (66%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVE 120
           DI+  KC  CG C +ACP++AI  
Sbjct: 285 DIEDEKCTGCGKCAKACPINAIEM 308


>gi|163802832|ref|ZP_02196721.1| electron transport complex protein RnfC [Vibrio sp. AND4]
 gi|159173372|gb|EDP58195.1| electron transport complex protein RnfC [Vibrio sp. AND4]
          Length = 911

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/110 (20%), Positives = 37/110 (33%), Gaps = 14/110 (12%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            CI C  C   CPA  +  +               ++++  CI CG C   CP   I   
Sbjct: 377 ECIRCSQCAEACPAS-LLPQQLQWYSKSQEYEKLEELNLKDCIECGACAFVCP-SEIPLV 434

Query: 122 PNF------------EFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
             +            E A   R +L +++++     ++ E E       D
Sbjct: 435 QYYRQAKAEIRTRAQETAAAERAKLRFEEKKARMEREKLERENRFKKAAD 484


>gi|56412899|ref|YP_149974.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197361830|ref|YP_002141466.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56127156|gb|AAV76662.1| putative dihydropyrimidine dehydrogenase [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197093306|emb|CAR58754.1| putative dihydropyrimidine dehydrogenase [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
          Length = 411

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +      +E+C+ C  C   C         G +  +    +     +  K
Sbjct: 324 IPAEDLDRSYIVYPRINQEKCVGCGRCYISCYDG------GHQAMEWDEHSRTPHCNTEK 377

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 378 CVGCLLCGHVCPVACIDLG 396


>gi|317486534|ref|ZP_07945357.1| nitroreductase [Bilophila wadsworthia 3_1_6]
 gi|316922209|gb|EFV43472.1| nitroreductase [Bilophila wadsworthia 3_1_6]
          Length = 262

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 7/71 (9%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +      ++ CI C  C ++CP + +   +                 + +CI CG C   
Sbjct: 1   MVSLELNQDHCIRCGRCISVCPQRILGRHTNGSVD-------VLHGALARCIRCGHCVAV 53

Query: 113 CPVDAIVEGPN 123
           CP  A+     
Sbjct: 54  CPKAALTLEHI 64


>gi|300854120|ref|YP_003779104.1| pyruvate:ferredoxin oxidoreductase [Clostridium ljungdahlii DSM
           13528]
 gi|300434235|gb|ADK14002.1| pyruvate:ferredoxin oxidoreductase [Clostridium ljungdahlii DSM
           13528]
          Length = 1170

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 28/88 (31%), Gaps = 16/88 (18%)

Query: 51  HALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY 96
            A+       ++CI C  C  +CP               +A         +         
Sbjct: 676 IAINVPEWQVDKCIQCNQCSFVCPHAAIRPVLTTEEELAKAPQGFEAKDANGAKGLKFTM 735

Query: 97  DIDMIKCIYCGLCQEACP--VDAIVEGP 122
            I  + C  CG C++ CP    A+V  P
Sbjct: 736 AISPLDCSGCGNCEDVCPAKEKALVMKP 763


>gi|251789756|ref|YP_003004477.1| RnfABCDGE type electron transport complex subunit B [Dickeya zeae
           Ech1591]
 gi|247538377|gb|ACT06998.1| electron transport complex, RnfABCDGE type, B subunit [Dickeya zeae
           Ech1591]
          Length = 196

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 25/84 (29%), Gaps = 10/84 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E          +   +     EE CI C  C   CP  AI   +             + +
Sbjct: 92  EPQPLDAGTPQKPEPQVAWIDEENCIGCTKCIQACPVDAIIGST----------RAVHTV 141

Query: 99  DMIKCIYCGLCQEACPVDAIVEGP 122
               C  C LC   CP D I   P
Sbjct: 142 IRDLCTGCNLCVAPCPTDCIELRP 165


>gi|170767624|ref|ZP_02902077.1| dihydroorotate dehydrogenase family protein [Escherichia albertii
           TW07627]
 gi|170123958|gb|EDS92889.1| dihydroorotate dehydrogenase family protein [Escherichia albertii
           TW07627]
          Length = 411

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +       ++C+ C  C   C         G +  + + +T     +  K
Sbjct: 324 VPAEDLDRSYIVYPNINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPYCNTEK 377

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 378 CVGCLLCGHVCPVGCIDLG 396


>gi|218778023|ref|YP_002429341.1| glycyl-radical enzyme activating protein family [Desulfatibacillum
           alkenivorans AK-01]
 gi|218759407|gb|ACL01873.1| Pyruvate formate lyase activating enzyme [Desulfatibacillum
           alkenivorans AK-01]
          Length = 317

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 19/91 (20%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           AL +      RCI C+ C  +CP  A+ +                 ID   C  CG C +
Sbjct: 43  ALPQVQWIGSRCIGCRSCVEVCPHNALELTQEG-----------MQIDRGLCEGCGRCAD 91

Query: 112 ACPVDAIVEGPNFEFATETR--QELYYDKER 140
            CP  A+      E   E R  ++L  + E+
Sbjct: 92  ECPSTAM------EMLGEDRTLEDLAAELEK 116


>gi|157737741|ref|YP_001490425.1| 4Fe-4S ferredoxin, iron-sulfur binding [Arcobacter butzleri RM4018]
 gi|157699595|gb|ABV67755.1| 4Fe-4S ferredoxin, iron-sulfur binding [Arcobacter butzleri RM4018]
          Length = 557

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 28/104 (26%), Gaps = 12/104 (11%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117
            E  C  C  C   C   A+                   I+   C  CG C+ +CP  D 
Sbjct: 425 NEANCTLCLSCVGACNVDALFANEAD---------FTLRINPSLCTACGYCEVSCPEADC 475

Query: 118 IVEG-PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDS 160
           +       E      +E    K++L         E       + 
Sbjct: 476 LTITKDEIELQPSWFKENILAKDKLFA-CVECGKEFATTKAIEK 518


>gi|120611158|ref|YP_970836.1| RnfABCDGE type electron transport complex subunit B [Acidovorax
           citrulli AAC00-1]
 gi|120589622|gb|ABM33062.1| electron transport complex, RnfABCDGE type, B subunit [Acidovorax
           citrulli AAC00-1]
          Length = 243

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 21/64 (32%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C LC   CP  AI                 + +    C  C LC   CPVD I
Sbjct: 89  DELACIGCTLCIKACPTDAILGT----------HKRMHTVIEAHCTGCELCIPVCPVDCI 138

Query: 119 VEGP 122
               
Sbjct: 139 TMEN 142



 Score = 38.5 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 13/25 (52%), Positives = 16/25 (64%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           ID + CI C LC +ACP DAI+   
Sbjct: 88  IDELACIGCTLCIKACPTDAILGTH 112


>gi|90579149|ref|ZP_01234959.1| electron transport complex protein RnfB [Vibrio angustum S14]
 gi|90439982|gb|EAS65163.1| electron transport complex protein RnfB [Vibrio angustum S14]
          Length = 194

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 27/78 (34%), Gaps = 10/78 (12%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E+ CI C  C   CP  AI   +             + +   +C  C LC   CP D
Sbjct: 108 FIHEDMCIGCTKCIQACPVDAIVGGTK----------SMHTVIKDECTGCDLCVAPCPTD 157

Query: 117 AIVEGPNFEFATETRQEL 134
            I   P  E     + +L
Sbjct: 158 CIEMIPVKETPDNWKWQL 175


>gi|73668208|ref|YP_304223.1| glutamate synthase (NADPH) GltB2 subunit [Methanosarcina barkeri
           str. Fusaro]
 gi|72395370|gb|AAZ69643.1| glutamate synthase (NADPH) GltB2 subunit [Methanosarcina barkeri
           str. Fusaro]
          Length = 503

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 19/63 (30%), Gaps = 11/63 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++C+ C  C   C       E                I+  KC  C  C   CP DAI
Sbjct: 15  DRDQCMDCGRCIENCSYGVYRREGDKIL-----------IESRKCTGCLRCVAMCPRDAI 63

Query: 119 VEG 121
              
Sbjct: 64  TLT 66


>gi|333001282|gb|EGK20850.1| hypothetical protein SFVA6_3000 [Shigella flexneri VA-6]
          Length = 411

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +       ++C+ C  C   C         G +  + + +T     +  K
Sbjct: 324 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 378 CVGCLLCGHVCPVGCIELG 396


>gi|332278699|ref|ZP_08391112.1| dihydropyrimidine dehydrogenase [Shigella sp. D9]
 gi|332101051|gb|EGJ04397.1| dihydropyrimidine dehydrogenase [Shigella sp. D9]
          Length = 413

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +       ++C+ C  C   C         G +  + + +T     +  K
Sbjct: 326 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 379

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 380 CVGCLLCGHVCPVGCIELG 398


>gi|327479948|gb|AEA83258.1| electron transport complex, RnfABCDGE type, C subunit [Pseudomonas
           stutzeri DSM 4166]
          Length = 487

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 26/77 (33%), Gaps = 2/77 (2%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            +    CI C  C   CP     +E   R           +  +  CI CG C   CP  
Sbjct: 363 RSDSAPCIRCARCVDACPMGLAPLEMAART-RVDDFDGASEYGLRDCILCGCCAYVCPSH 421

Query: 117 AIVEGPNFEFATETRQE 133
            I     F++A   + E
Sbjct: 422 -IPLVQYFQYAVGQQDE 437


>gi|325290779|ref|YP_004266960.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Syntrophobotulus glycolicus DSM 8271]
 gi|324966180|gb|ADY56959.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Syntrophobotulus glycolicus DSM 8271]
          Length = 650

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 15/96 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            ++Y F+ +   +   ++            L +Y    E+C  C LC   CPA  I  + 
Sbjct: 567 TIKY-FRPEYEAHIKEKRCPAHVCT----TLLKYSIDHEKCKRCGLCAKHCPAGCIFGD- 620

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                    +   Y+I+   CI C  C E C   A+
Sbjct: 621 ---------KNTPYEIETENCIQCQTCLERCKFGAV 647



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN--FEFA 127
           +   P     I+            ++Y ID  KC  CGLC + CP   I    N  +E  
Sbjct: 569 KYFRPEYEAHIKEKRCPAHVCTTLLKYSIDHEKCKRCGLCAKHCPAGCIFGDKNTPYEIE 628

Query: 128 TET 130
           TE 
Sbjct: 629 TEN 631


>gi|320184421|gb|EFW59230.1| dihydropyrimidine dehydrogenase [Shigella flexneri CDC 796-83]
          Length = 282

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +       ++C+ C  C   C         G +  + + +T     +  K
Sbjct: 195 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 248

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 249 CVGCLLCGHVCPVGCIELG 267


>gi|239905762|ref|YP_002952501.1| iron-sulfur binding protein [Desulfovibrio magneticus RS-1]
 gi|239795626|dbj|BAH74615.1| iron-sulfur binding protein [Desulfovibrio magneticus RS-1]
          Length = 298

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              RC  C  C A C   A++     R          + I+   C  C +C   CP  AI
Sbjct: 64  DPARCDGCGECAARCRYGAVSAADRDR----------FVINPAHCEGCKVCVVLCPRQAI 113

Query: 119 VEGP 122
           +  P
Sbjct: 114 LFTP 117


>gi|239627406|ref|ZP_04670437.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517552|gb|EEQ57418.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 251

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 30/83 (36%), Gaps = 14/83 (16%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
             P   G     +R    +   P  ++ CIAC LC   CP  AI  ++      GT    
Sbjct: 154 QEPQVPGDRP--YRDWKQMPVVPLADDTCIACGLCAEQCPTGAIPADAPGTTDSGT---- 207

Query: 95  RYDIDMIKCIYCGLCQEACPVDA 117
                   C+ C  C   CPV A
Sbjct: 208 --------CMLCMRCVAVCPVHA 222



 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 17/38 (44%)

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            G R +   ++     +    CI CGLC E CP  AI 
Sbjct: 159 PGDRPYRDWKQMPVVPLADDTCIACGLCAEQCPTGAIP 196


>gi|219871790|ref|YP_002476165.1| electron transport complex protein RnfC [Haemophilus parasuis
           SH0165]
 gi|219691994|gb|ACL33217.1| electron transport complex protein RnfC/NADH:ubiquinone
           oxidoreductase, subunit RnfC [Haemophilus parasuis
           SH0165]
          Length = 666

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 35/105 (33%), Gaps = 3/105 (2%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E  CI C  C   CP   +  +               +  +  CI CG+C   CP  
Sbjct: 373 PEPERNCIRCSSCSDACPVG-LLPQQLYWFARAEDHDKSKEYHLDACIECGVCAYVCP-S 430

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVR-NIVTDS 160
            I     F       QE+    ++      R+E+   R N   ++
Sbjct: 431 YIPLIQYFRQEKAKIQEVDQKAKQAEEAKIRFEAREARLNKEKEA 475


>gi|169333814|ref|ZP_02861007.1| hypothetical protein ANASTE_00200 [Anaerofustis stercorihominis DSM
           17244]
 gi|169259379|gb|EDS73345.1| hypothetical protein ANASTE_00200 [Anaerofustis stercorihominis DSM
           17244]
          Length = 505

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-----IDMIKCIYCGLCQEACPVDA 117
           C+ C+              + P         V ++     I+  KC+ CG C EACP +A
Sbjct: 103 CMQCEENTVFVTNNCRGCYAHPCSEVCPVDAVYFENGKSVINKDKCVRCGRCVEACPYNA 162

Query: 118 I 118
           I
Sbjct: 163 I 163



 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 6/63 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112
            +++C+ C  C   CP  AI     P            D      ID  KC+ CG C  A
Sbjct: 144 NKDKCVRCGRCVEACPYNAIVKFDRPCKASCGVNAYTEDEEGNAKIDYEKCVSCGQCIVA 203

Query: 113 CPV 115
           CP 
Sbjct: 204 CPF 206


>gi|126701030|ref|YP_001089927.1| putative iron-only hydrogenase, catalytic subunit [Clostridium
           difficile 630]
 gi|255102610|ref|ZP_05331587.1| putative iron-only hydrogenase, catalytic subunit [Clostridium
           difficile QCD-63q42]
 gi|255308436|ref|ZP_05352607.1| putative iron-only hydrogenase, catalytic subunit [Clostridium
           difficile ATCC 43255]
 gi|115252467|emb|CAJ70310.1| putative iron-only hydrogenase, catalytic subunit HymC-like
           [Clostridium difficile]
          Length = 593

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 59  GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPV 115
              +CI C+ CE +C   Q +   SG      T  +  +  D+   +C +CG C   CP 
Sbjct: 147 DHSKCILCRRCETVCNDIQTVGALSGVNRGFNTLVSTFFNSDMVETECTFCGQCISVCPT 206

Query: 116 DAIVEGPN 123
            A+ E  N
Sbjct: 207 GALTEVDN 214


>gi|146281701|ref|YP_001171854.1| electron transport complex, RnfABCDGE type, C subunit [Pseudomonas
           stutzeri A1501]
 gi|25136601|emb|CAC03726.2| rnfC protein [Pseudomonas stutzeri]
 gi|145569906|gb|ABP79012.1| electron transport complex, RnfABCDGE type, C subunit [Pseudomonas
           stutzeri A1501]
          Length = 487

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 26/77 (33%), Gaps = 2/77 (2%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            +    CI C  C   CP     +E   R           +  +  CI CG C   CP  
Sbjct: 363 RSDSAPCIRCARCVDACPMGLAPLEMAART-RVDDFDGASEYGLRDCILCGCCAYVCPSH 421

Query: 117 AIVEGPNFEFATETRQE 133
            I     F++A   + E
Sbjct: 422 -IPLVQYFQYAVGQQDE 437


>gi|89067229|ref|ZP_01154742.1| formate dehydrogenase, alpha subunit [Oceanicola granulosus
           HTCC2516]
 gi|89046798|gb|EAR52852.1| formate dehydrogenase, alpha subunit [Oceanicola granulosus
           HTCC2516]
          Length = 924

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114
             + CI C LC   C  +    +       G +    +D    +    C+ CG C +ACP
Sbjct: 147 NLDACIQCGLCVRACR-EVQVNDVIGMAGRGHQAFPVFDLDDPMGDSTCVACGECVQACP 205

Query: 115 VDAIV 119
             A++
Sbjct: 206 TGALM 210


>gi|121606904|ref|YP_984233.1| dihydropyrimidine dehydrogenase [Polaromonas naphthalenivorans CJ2]
 gi|120595873|gb|ABM39312.1| dihydrouracil dehydrogenase (NAD+) / dihydropyrimidine
           dehydrogenase (NADP+) [Polaromonas naphthalenivorans
           CJ2]
          Length = 435

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 6/65 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117
            ++ CI+C  C       A    S             +++   +C+ C LC   CPV   
Sbjct: 343 DQDSCISCGRCHI-----ACEDTSHQAISAMKDGKRHFEVKEDECVGCNLCALVCPVPEC 397

Query: 118 IVEGP 122
           I    
Sbjct: 398 ITLRD 402


>gi|114567439|ref|YP_754593.1| ferredoxin hydrogenase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114338374|gb|ABI69222.1| Ferredoxin hydrogenase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
          Length = 387

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 28/60 (46%), Gaps = 10/60 (16%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C AC  C  ICP  AI+ E G + H          I   KCI CG C   CP +AI E
Sbjct: 14  DDCKACDHCTFICPTGAISGELGQKHH----------ISPKKCINCGQCLINCPFNAIDE 63


>gi|331662865|ref|ZP_08363775.1| putative pyruvate-flavodoxin oxidoreductase [Escherichia coli
           TA143]
 gi|331058664|gb|EGI30641.1| putative pyruvate-flavodoxin oxidoreductase [Escherichia coli
           TA143]
          Length = 593

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 65  MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 118

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 119 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 178

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 179 RQNPEIKAINMMSRLEHVEEEK 200


>gi|229488683|ref|ZP_04382549.1| NADPH-ferredoxin reductase fpra [Rhodococcus erythropolis SK121]
 gi|229324187|gb|EEN89942.1| NADPH-ferredoxin reductase fpra [Rhodococcus erythropolis SK121]
          Length = 543

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 3/54 (5%)

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           +CP   I              T    ID   CI CG C + CPV+AI      +
Sbjct: 1   MCPVNCIHPTPDEAP---FATTEMLYIDPDTCIDCGACVDECPVEAIFPDNELD 51


>gi|255657360|ref|ZP_05402769.1| putative iron-only hydrogenase, catalytic subunit [Clostridium
           difficile QCD-23m63]
 gi|296451826|ref|ZP_06893545.1| periplasmic hydrogenase [Clostridium difficile NAP08]
 gi|296879778|ref|ZP_06903752.1| periplasmic hydrogenase [Clostridium difficile NAP07]
 gi|296259305|gb|EFH06181.1| periplasmic hydrogenase [Clostridium difficile NAP08]
 gi|296429249|gb|EFH15122.1| periplasmic hydrogenase [Clostridium difficile NAP07]
          Length = 593

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 59  GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPV 115
              +CI C+ CE +C   Q +   SG      T  +  +  D+   +C +CG C   CP 
Sbjct: 147 DHSKCILCRRCETVCNDIQTVGALSGVNRGFNTLVSTFFNSDMVETECTFCGQCISVCPT 206

Query: 116 DAIVEGPN 123
            A+ E  N
Sbjct: 207 GALTEVDN 214


>gi|289208952|ref|YP_003461018.1| electron transporter subunit B [Thioalkalivibrio sp. K90mix]
 gi|288944583|gb|ADC72282.1| electron transport complex, RnfABCDGE type, B subunit
           [Thioalkalivibrio sp. K90mix]
          Length = 194

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 31/91 (34%), Gaps = 10/91 (10%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100
              +P    E         E  CI C LC   CP  AI   +             + +  
Sbjct: 90  REPTPLEEEEQEKAVAVIDENICIGCTLCIQACPVDAILGAAKQ----------MHTVIE 139

Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
            +C  C LC E CPVD I   P     TE R
Sbjct: 140 EECTGCELCIEPCPVDCIEMVPVQTDITEWR 170


>gi|169633882|ref|YP_001707618.1| hypothetical protein ABSDF2362 [Acinetobacter baumannii SDF]
 gi|169152674|emb|CAP01675.1| conserved hypothetical protein [Acinetobacter baumannii]
          Length = 263

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 28/87 (32%), Gaps = 10/87 (11%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P E      +  G     +    E+ CI C  C   CP  AI               + +
Sbjct: 66  PAETSVWPVQADGRPQRMKAIIREDECIGCTKCINACPVDAIIGSGK----------LMH 115

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPN 123
            I    C  C LC   CPVD I    +
Sbjct: 116 TILTDLCTGCELCIPPCPVDCIDLVED 142


>gi|188587369|ref|YP_001918914.1| Indolepyruvate ferredoxin oxidoreductase [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179352056|gb|ACB86326.1| Indolepyruvate ferredoxin oxidoreductase [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 612

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 6/64 (9%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            +      CI C+ C                     +  ++  ID   C+ C +C + CP
Sbjct: 544 HFYVNPNVCIGCRNCVK------TNCPPIKMTEYPNQDKLKSFIDPDVCVGCSVCSQVCP 597

Query: 115 VDAI 118
           V+AI
Sbjct: 598 VEAI 601


>gi|254977029|ref|ZP_05273501.1| putative iron-only hydrogenase, catalytic subunit [Clostridium
           difficile QCD-66c26]
 gi|255094356|ref|ZP_05323834.1| putative iron-only hydrogenase, catalytic subunit [Clostridium
           difficile CIP 107932]
 gi|255316109|ref|ZP_05357692.1| putative iron-only hydrogenase, catalytic subunit [Clostridium
           difficile QCD-76w55]
 gi|255518770|ref|ZP_05386446.1| putative iron-only hydrogenase, catalytic subunit [Clostridium
           difficile QCD-97b34]
 gi|255651948|ref|ZP_05398850.1| putative iron-only hydrogenase, catalytic subunit [Clostridium
           difficile QCD-37x79]
 gi|260684912|ref|YP_003216197.1| putative iron-only hydrogenase, catalytic subunit [Clostridium
           difficile CD196]
 gi|260688570|ref|YP_003219704.1| putative iron-only hydrogenase, catalytic subunit [Clostridium
           difficile R20291]
 gi|306521697|ref|ZP_07408044.1| putative iron-only hydrogenase, catalytic subunit [Clostridium
           difficile QCD-32g58]
 gi|260211075|emb|CBA66447.1| putative iron-only hydrogenase, catalytic subunit [Clostridium
           difficile CD196]
 gi|260214587|emb|CBE07153.1| putative iron-only hydrogenase, catalytic subunit [Clostridium
           difficile R20291]
          Length = 593

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 59  GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPV 115
              +CI C+ CE +C   Q +   SG      T  +  +  D+   +C +CG C   CP 
Sbjct: 147 DHSKCILCRRCETVCNDIQTVGALSGVNRGFNTLVSTFFNSDMVETECTFCGQCISVCPT 206

Query: 116 DAIVEGPN 123
            A+ E  N
Sbjct: 207 GALTEVDN 214


>gi|77918551|ref|YP_356366.1| pyruvate-formate lyase-activating enzyme [Pelobacter carbinolicus
           DSM 2380]
 gi|77544634|gb|ABA88196.1| pyruvate-formate lyase-activating enzyme [Pelobacter carbinolicus
           DSM 2380]
          Length = 318

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ++C++C  C A+CP     +ES        R           CI CG C + CP  A+  
Sbjct: 58  DQCVSCGKCLAVCPNGVHAMESVANGSSQHRVERSVT-----CIGCGACAKVCPAKALRI 112


>gi|53802986|ref|YP_115287.1| electron transport complex protein RnfB [Methylococcus capsulatus
           str. Bath]
 gi|53756747|gb|AAU91038.1| electron transport complex, B subunit [Methylococcus capsulatus
           str. Bath]
          Length = 178

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 31/93 (33%), Gaps = 10/93 (10%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E    +     E         E +CI C LC   CP  AI   +           + + +
Sbjct: 88  EPKPLNDEHGAEKPESVAVIDETKCIGCTLCIQACPVDAILGAAK----------LMHTV 137

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
              +C  C LC   CPVD I   P  E     R
Sbjct: 138 IASECTGCELCIAPCPVDCIAMEPVRENLGTWR 170


>gi|16081719|ref|NP_394099.1| pyruvate ferredoxin oxidoreductase, delta subunit related protein
           [Thermoplasma acidophilum DSM 1728]
 gi|10639794|emb|CAC11766.1| pyruvate ferredoxin oxidoreductase, delta subunit related protein
           [Thermoplasma acidophilum]
          Length = 96

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR--RTVRYDIDMIKCIYCGLC 109
            ++R     ++CI C +C   CP  AI IE+G +     R  +     ID   C  CG+C
Sbjct: 20  RIQRPTIQYDKCIRCMICWKYCPDNAINIENGNKEAPNERIAKMEYPVIDYNFCKGCGIC 79

Query: 110 QEACPVDAIVE 120
              CP   I  
Sbjct: 80  ANECPEKCIDM 90


>gi|148259621|ref|YP_001233748.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Acidiphilium
           cryptum JF-5]
 gi|326402829|ref|YP_004282910.1| putative NADH ubiquinone oxidoreductase [Acidiphilium multivorum
           AIU301]
 gi|146401302|gb|ABQ29829.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Acidiphilium
           cryptum JF-5]
 gi|325049690|dbj|BAJ80028.1| putative NADH ubiquinone oxidoreductase [Acidiphilium multivorum
           AIU301]
          Length = 264

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 4/68 (5%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
             CEA C   A +  +G     G R  + Y     +C+ C  C E CP  A+ E  ++ F
Sbjct: 39  GRCEAGCEVCAASCPTGAIGLAGARIALDY----GRCVVCQRCVETCPTGALAESRDWAF 94

Query: 127 ATETRQEL 134
              TR +L
Sbjct: 95  GARTRDDL 102


>gi|327399376|ref|YP_004340245.1| cobyrinic acid ac-diamide synthase [Hippea maritima DSM 10411]
 gi|327182005|gb|AEA34186.1| Cobyrinic acid ac-diamide synthase [Hippea maritima DSM 10411]
          Length = 289

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 13/85 (15%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           K      F+G        +   +C+ C LC  +C   AI I               Y +D
Sbjct: 49  KLKHKELFKGNPKAIIDVD---KCVKCDLCRRLCRFDAIHINPDGN----------YYVD 95

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNF 124
            +KC  C LC+ ACP +AI     +
Sbjct: 96  ELKCDSCELCKVACPTEAIAMNEVY 120


>gi|325525301|gb|EGD03152.1| dihydropyrimidine dehydrogenase subunit B [Burkholderia sp. TJI49]
          Length = 438

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 6/76 (7%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++       +    ++RCI C LC   C     + ++  R  DG R    +++   +C+ 
Sbjct: 328 KYLNLQYDIKARIDQDRCIQCGLCHIACED--TSHQAITREKDGVR---HFEVVDAECVG 382

Query: 106 CGLCQEACPV-DAIVE 120
           C LC   CPV   I  
Sbjct: 383 CNLCMHVCPVEQCITM 398


>gi|309788035|ref|ZP_07682644.1| uncharacterized protein yeiA [Shigella dysenteriae 1617]
 gi|308924169|gb|EFP69667.1| uncharacterized protein yeiA [Shigella dysenteriae 1617]
          Length = 411

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +       ++C+ C  C   C         G +  + + +T     +  K
Sbjct: 324 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 378 CVGCLLCGHVCPVGCIELG 396


>gi|260867830|ref|YP_003234232.1| fused putative pyruvate-flavodoxin oxidoreductase: hypothetical
           protein/hypothetical protein/FeS binding protein
           [Escherichia coli O111:H- str. 11128]
 gi|257764186|dbj|BAI35681.1| fused predicted pyruvate-flavodoxin oxidoreductase: conserved
           protein/conserved protein/FeS binding protein
           [Escherichia coli O111:H- str. 11128]
 gi|323178140|gb|EFZ63719.1| pyruvate:ferredoxin oxidoreductase [Escherichia coli 1180]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGSWPMGTTRWEKRNIAEEIPTWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|260855108|ref|YP_003228999.1| fused putative pyruvate-flavodoxin oxidoreductase: conserved
           protein/conserved protein/FeS binding protein
           [Escherichia coli O26:H11 str. 11368]
 gi|257753757|dbj|BAI25259.1| fused predicted pyruvate-flavodoxin oxidoreductase: conserved
           protein/conserved protein/FeS binding protein
           [Escherichia coli O26:H11 str. 11368]
 gi|323157325|gb|EFZ43442.1| pyruvate:ferredoxin oxidoreductase [Escherichia coli EPECa14]
          Length = 1174

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGSWPMGTTRWEKRNIAEEIPTWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|255010822|ref|ZP_05282948.1| putative pyruvate-flavodoxin oxidoreductase [Bacteroides fragilis
           3_1_12]
 gi|313148624|ref|ZP_07810817.1| pyruvate-flavodoxin oxidoreductase [Bacteroides fragilis 3_1_12]
 gi|313137391|gb|EFR54751.1| pyruvate-flavodoxin oxidoreductase [Bacteroides fragilis 3_1_12]
          Length = 1184

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 28/81 (34%), Gaps = 15/81 (18%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG  A     N  E CI C  C  +CP                A   +           T
Sbjct: 676 RGVAAFVPEWN-AENCIQCNKCAYVCPHASIRPFVLDAEEQKGASFEQLKAVGKAFDGMT 734

Query: 94  VRYDIDMIKCIYCGLCQEACP 114
            R  +D++ C+ CG C + CP
Sbjct: 735 FRIQVDVLDCLGCGNCADICP 755


>gi|118444231|ref|YP_878756.1| anaerobic sulfite reductase subunit C [Clostridium novyi NT]
 gi|118134687|gb|ABK61731.1| anaerobic sulfite reductase subunit C [Clostridium novyi NT]
          Length = 316

 Score = 47.4 bits (111), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 23/88 (26%), Gaps = 8/88 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +   +     G   +        RCI+C  C   C                     +
Sbjct: 145 CPNDCIKSRMHDFGIIGMTMPNYESYRCISCGACVRTC--------KKKSVGALHFENFK 196

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPN 123
              +  KCI CG C   CP  A      
Sbjct: 197 VVRNQEKCIGCGECVIQCPTGAWTRSHE 224


>gi|315637523|ref|ZP_07892731.1| iron-sulfur cluster-binding domain protein [Arcobacter butzleri
           JV22]
 gi|315478182|gb|EFU68907.1| iron-sulfur cluster-binding domain protein [Arcobacter butzleri
           JV22]
          Length = 557

 Score = 47.0 bits (110), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 28/104 (26%), Gaps = 12/104 (11%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117
            E  C  C  C   C   A+                   I+   C  CG C+ +CP  D 
Sbjct: 425 NEANCTLCLSCVGACNVDALFANEAD---------FTLRINPSLCTACGYCEVSCPEADC 475

Query: 118 IVEG-PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDS 160
           +       E      +E    K++L         E       + 
Sbjct: 476 LTITKDEIELQPSWFKENILAKDKLFA-CVECGKEFATTKAIEK 518


>gi|300245649|gb|ADJ93882.1| putative benzylsuccinate synthase BssD [Clostridia bacterium
           enrichment culture clone BF]
          Length = 312

 Score = 47.0 bits (110), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 29/102 (28%), Gaps = 19/102 (18%)

Query: 19  AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78
            F   +   F     +  P+     S     +  L       ++C  C  C  +C   A 
Sbjct: 19  GFRTTI---FLKGCPLRCPWCHNPDSQDPEKQILL-----DMDKCTGCGACIQVCSNGAC 70

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             E                 +   CI CG C EACP  A   
Sbjct: 71  RQEGESII-----------FERSLCIKCGRCVEACPASAREM 101


>gi|301024363|ref|ZP_07188052.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 196-1]
 gi|299880460|gb|EFI88671.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 196-1]
          Length = 411

 Score = 47.0 bits (110), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +       ++C+ C  C   C         G +  + + +T     +  K
Sbjct: 324 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 378 CVGCLLCGHVCPVGCIELG 396


>gi|295096019|emb|CBK85109.1| electron transport complex, RnfABCDGE type, C subunit [Enterobacter
           cloacae subsp. cloacae NCTC 9394]
          Length = 673

 Score = 47.0 bits (110), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 38/111 (34%), Gaps = 15/111 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ CI C  C   CPA  +  +       G         ++  CI CG C   CP    
Sbjct: 373 EEKGCIRCSACADACPAD-LLPQQLYWYSKGQLHDKAQAHNLADCIECGACAWVCP---- 427

Query: 119 VEGPNFEFATETRQE------LYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               N       RQE      +  +++R      R+E+   R +  +   R
Sbjct: 428 ---SNIPLVQYFRQEKAEIYAISMEEKRAAEAKARFEARQAR-LEREKQAR 474


>gi|256826478|ref|YP_003150437.1| formate dehydrogenase, alpha subunit [Cryptobacterium curtum DSM
           15641]
 gi|256582621|gb|ACU93755.1| formate dehydrogenase, alpha subunit, archaeal-type
           [Cryptobacterium curtum DSM 15641]
          Length = 906

 Score = 47.0 bits (110), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 35/85 (41%), Gaps = 6/85 (7%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQA--ITIESGPRCHDGTRRTVRYDIDMIK 102
           P + G   L+  PN    CI C+ C   C  QA   TI++G +    T      D     
Sbjct: 135 PIYDGNPFLQFDPN---LCIRCQRCVGACNNQARNHTIQTGKKGMRTTILAPFGDDWEST 191

Query: 103 -CIYCGLCQEACPVDAIVEGPNFEF 126
            C  CG C  ACP  AIVE     +
Sbjct: 192 TCESCGCCAAACPTGAIVEKRRHSY 216


>gi|261343671|ref|ZP_05971316.1| electron transport complex protein RnfC [Providencia rustigianii
           DSM 4541]
 gi|282568054|gb|EFB73589.1| electron transport complex protein RnfC [Providencia rustigianii
           DSM 4541]
          Length = 779

 Score = 47.0 bits (110), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 1/52 (1%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           CI C LC   CPA  +  +       G         ++  CI CG C   CP
Sbjct: 378 CIRCGLCVDACPAG-LLPQQLYWFSKGDEHEKAQKHNLFDCIECGACAYVCP 428



 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 9/15 (60%), Positives = 10/15 (66%)

Query: 100 MIKCIYCGLCQEACP 114
              CI CGLC +ACP
Sbjct: 375 EEACIRCGLCVDACP 389


>gi|225174228|ref|ZP_03728227.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Dethiobacter alkaliphilus AHT 1]
 gi|225170013|gb|EEG78808.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Dethiobacter alkaliphilus AHT 1]
          Length = 1174

 Score = 47.0 bits (110), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 18/84 (21%)

Query: 57  PNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRYDID--M 100
               ++CI C  C  ICP               +A       +        ++Y I    
Sbjct: 682 EWQIDKCIQCGQCAYICPHATIRAYLLDDEEVQRAPDTFKTKKASGKGLEDLQYRIQVAP 741

Query: 101 IKCIYCGLCQEACPV--DAIVEGP 122
           + C  CG C + CP    A++  P
Sbjct: 742 MDCTGCGNCADVCPAKGKALIMKP 765


>gi|224368769|ref|YP_002602930.1| NuoF [Desulfobacterium autotrophicum HRM2]
 gi|223691485|gb|ACN14768.1| NuoF [Desulfobacterium autotrophicum HRM2]
          Length = 595

 Score = 47.0 bits (110), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 36/97 (37%), Gaps = 15/97 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            LRY F+ +   +   ++            L ++    E C  C LC   CPA AI    
Sbjct: 514 TLRY-FRDEYEAHIEEKRCPAKIC----PDLVKFEVDPELCKRCGLCHKGCPADAIIW-- 566

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
                   ++     ID  KCI C  C   CP DAI 
Sbjct: 567 --------KKKQVAVIDKEKCIKCMSCYARCPFDAIF 595



 Score = 38.2 bits (87), Expect = 0.38,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 8/62 (12%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
            IE            V++++D   C  CGLC + CP DAI+           +Q    DK
Sbjct: 525 HIEEKRCPAKICPDLVKFEVDPELCKRCGLCHKGCPADAIIWK--------KKQVAVIDK 576

Query: 139 ER 140
           E+
Sbjct: 577 EK 578


>gi|224372293|ref|YP_002606665.1| pyruvate flavodoxin oxidoreductase subunit delta [Nautilia
           profundicola AmH]
 gi|223589605|gb|ACM93341.1| 2-oxoacid:acceptor oxidoreductase, delta subunit,
           pyruvate/2-ketoisovalerate [Nautilia profundicola AmH]
          Length = 134

 Score = 47.0 bits (110), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 1/59 (1%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E CI C  C   CP     +E       G ++     I+   C  CG+C E CP  
Sbjct: 51  YNRELCIDCDFCWVACPDSCFEVEEVVN-KRGKKQAKIVGINYNLCKGCGVCVEVCPTP 108


>gi|219852538|ref|YP_002466970.1| protein of unknown function DUF362 [Methanosphaerula palustris
           E1-9c]
 gi|219546797|gb|ACL17247.1| protein of unknown function DUF362 [Methanosphaerula palustris
           E1-9c]
          Length = 383

 Score = 47.0 bits (110), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 33/91 (36%), Gaps = 11/91 (12%)

Query: 28  FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH 87
           FK  ++++            R      R      RC  C  C   CP +AIT+       
Sbjct: 290 FKMPSSMSLARVPPFVLSCARRVLG-TRPVVDRARCTRCGTCRDNCPPEAITM------- 341

Query: 88  DGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              +      ID  +CI C  CQE CP  AI
Sbjct: 342 ---KVGDYPMIDQSRCIACFCCQELCPAGAI 369



 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%)

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVE-GPNFEFATETR 131
            R  +D  +C  CG C++ CP +AI     ++    ++R
Sbjct: 315 TRPVVDRARCTRCGTCRDNCPPEAITMKVGDYPMIDQSR 353


>gi|187935770|ref|YP_001887225.1| sulfite reductase, subunit C [Clostridium botulinum B str. Eklund
           17B]
 gi|187723923|gb|ACD25144.1| sulfite reductase, subunit C [Clostridium botulinum B str. Eklund
           17B]
          Length = 320

 Score = 47.0 bits (110), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 24/88 (27%), Gaps = 8/88 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +         G   +      ++RC++C  C   C                     +
Sbjct: 145 CPNDCIKARMHDFGIIGMTEPQYDKDRCVSCGACVRAC--------KKKSVDALKAVNYK 196

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPN 123
              +  KCI CG C   CP  A      
Sbjct: 197 IVRNEEKCIGCGECVINCPTGAWTRSKE 224


>gi|167856054|ref|ZP_02478797.1| electron transport complex protein RnfC [Haemophilus parasuis
           29755]
 gi|167852803|gb|EDS24074.1| electron transport complex protein RnfC [Haemophilus parasuis
           29755]
          Length = 629

 Score = 47.0 bits (110), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 35/105 (33%), Gaps = 3/105 (2%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E  CI C  C   CP   +  +               +  +  CI CG+C   CP  
Sbjct: 373 PEPERNCIRCSSCSDACPVD-LLPQQLYWFARAEDHDKSKEYHLDACIECGVCAYVCP-S 430

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVR-NIVTDS 160
            I     F       QE+    ++      R+E+   R N   ++
Sbjct: 431 YIPLIQYFRQEKAKIQEVDQKAKQAEEAKIRFEAREARLNKEKEA 475


>gi|170019536|ref|YP_001724490.1| dihydropyrimidine dehydrogenase [Escherichia coli ATCC 8739]
 gi|169754464|gb|ACA77163.1| dihydroorotate dehydrogenase family protein [Escherichia coli ATCC
           8739]
          Length = 411

 Score = 47.0 bits (110), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +       ++C+ C  C   C         G +  + + +T     +  K
Sbjct: 324 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 378 CVGCLLCGHVCPVGCIELG 396


>gi|158522075|ref|YP_001529945.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfococcus oleovorans Hxd3]
 gi|158510901|gb|ABW67868.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus
           oleovorans Hxd3]
          Length = 355

 Score = 47.0 bits (110), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 10/70 (14%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            A        + C  C+ C   C   AI + +               +D+ +CI CGLC 
Sbjct: 267 FANHYAQVDTDECTGCEACLDRCQMGAIRLNADDVAE----------VDLNRCIGCGLCV 316

Query: 111 EACPVDAIVE 120
             CP  AI  
Sbjct: 317 TTCPTQAITL 326



 Score = 33.5 bits (75), Expect = 9.1,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 4/64 (6%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            N    C  C  C  +  A    ++  PR  +         +D  +C  C  C + C + 
Sbjct: 237 QNPAGMCNCCGDCCGVLVA----LKKHPRPAEIVFANHYAQVDTDECTGCEACLDRCQMG 292

Query: 117 AIVE 120
           AI  
Sbjct: 293 AIRL 296


>gi|73748837|ref|YP_308076.1| glutamate synthase, alpha subunit [Dehalococcoides sp. CBDB1]
 gi|73660553|emb|CAI83160.1| glutamate synthase, alpha subunit [Dehalococcoides sp. CBDB1]
          Length = 500

 Score = 47.0 bits (110), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 12/89 (13%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           +RCI CK+C   C       ++            +  +    C+ C  C   CP  A+V 
Sbjct: 16  DRCIKCKVCITQCSFDTHYYDADDD---------QIKVRNQNCVGCHRCVTFCPTGALVV 66

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWE 149
             N     E RQ   +  E + +   + E
Sbjct: 67  RNN---PLEYRQNANWTPEMIEDIFKQAE 92


>gi|15921432|ref|NP_377101.1| ferredoxin [Sulfolobus tokodaii str. 7]
 gi|17366271|sp|P58331|FER2_SULTO RecName: Full=Zinc-containing ferredoxin-2
 gi|15622218|dbj|BAB66210.1| 104aa long ferredoxin [Sulfolobus tokodaii str. 7]
          Length = 104

 Score = 47.0 bits (110), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + CIA   C   CP         P      ++     I+   CI+C  C   CPV AI
Sbjct: 42  DFDVCIADGSCINACPVNVFQWFDTPGHPASEKKADP--INEKACIFCMACVNVCPVAAI 99

Query: 119 VEGP 122
              P
Sbjct: 100 DVKP 103


>gi|89108964|ref|AP_002744.1| predicted oxidoreductase [Escherichia coli str. K-12 substr. W3110]
 gi|90111398|ref|NP_416652.4| Dihydropyrimidine dehydrogenase, NADH-dependent, subunit B
           [Escherichia coli str. K-12 substr. MG1655]
 gi|157161627|ref|YP_001458945.1| dihydropyrimidine dehydrogenase [Escherichia coli HS]
 gi|161367574|ref|NP_288730.2| dihydropyrimidine dehydrogenase [Escherichia coli O157:H7 EDL933]
 gi|161986503|ref|YP_311088.2| dihydropyrimidine dehydrogenase [Shigella sonnei Ss046]
 gi|162139776|ref|NP_311066.2| dihydropyrimidine dehydrogenase [Escherichia coli O157:H7 str.
           Sakai]
 gi|168750527|ref|ZP_02775549.1| dihydroorotate dehydrogenase family protein [Escherichia coli
           O157:H7 str. EC4113]
 gi|168757729|ref|ZP_02782736.1| dihydroorotate dehydrogenase family protein [Escherichia coli
           O157:H7 str. EC4401]
 gi|168763803|ref|ZP_02788810.1| dihydroorotate dehydrogenase family protein [Escherichia coli
           O157:H7 str. EC4501]
 gi|168767760|ref|ZP_02792767.1| dihydroorotate dehydrogenase family protein [Escherichia coli
           O157:H7 str. EC4486]
 gi|168773142|ref|ZP_02798149.1| dihydroorotate dehydrogenase family protein [Escherichia coli
           O157:H7 str. EC4196]
 gi|168779990|ref|ZP_02804997.1| dihydroorotate dehydrogenase family protein [Escherichia coli
           O157:H7 str. EC4076]
 gi|168788957|ref|ZP_02813964.1| dihydroorotate dehydrogenase family protein [Escherichia coli
           O157:H7 str. EC869]
 gi|168801164|ref|ZP_02826171.1| dihydroorotate dehydrogenase family protein [Escherichia coli
           O157:H7 str. EC508]
 gi|170081770|ref|YP_001731090.1| oxidoreductase [Escherichia coli str. K-12 substr. DH10B]
 gi|188496096|ref|ZP_03003366.1| dihydroorotate dehydrogenase family protein [Escherichia coli
           53638]
 gi|193062277|ref|ZP_03043372.1| dihydroorotate dehydrogenase family protein [Escherichia coli E22]
 gi|193071085|ref|ZP_03052011.1| dihydroorotate dehydrogenase family protein [Escherichia coli
           E110019]
 gi|194427185|ref|ZP_03059736.1| dihydroorotate dehydrogenase family protein [Escherichia coli B171]
 gi|194436016|ref|ZP_03068118.1| dihydroorotate dehydrogenase family protein [Escherichia coli
           101-1]
 gi|195935523|ref|ZP_03080905.1| dihydropyrimidine dehydrogenase [Escherichia coli O157:H7 str.
           EC4024]
 gi|208807187|ref|ZP_03249524.1| dihydroorotate dehydrogenase family protein [Escherichia coli
           O157:H7 str. EC4206]
 gi|208814189|ref|ZP_03255518.1| dihydroorotate dehydrogenase family protein [Escherichia coli
           O157:H7 str. EC4045]
 gi|208819511|ref|ZP_03259831.1| dihydroorotate dehydrogenase family protein [Escherichia coli
           O157:H7 str. EC4042]
 gi|209396337|ref|YP_002271556.1| dihydroorotate dehydrogenase family protein [Escherichia coli
           O157:H7 str. EC4115]
 gi|217327385|ref|ZP_03443468.1| dihydroorotate dehydrogenase family protein [Escherichia coli
           O157:H7 str. TW14588]
 gi|238901329|ref|YP_002927125.1| putative oxidoreductase [Escherichia coli BW2952]
 gi|253772926|ref|YP_003035757.1| dihydropyrimidine dehydrogenase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254162161|ref|YP_003045269.1| dihydropyrimidine dehydrogenase [Escherichia coli B str. REL606]
 gi|254794046|ref|YP_003078883.1| dihydropyrimidine dehydrogenase [Escherichia coli O157:H7 str.
           TW14359]
 gi|256022169|ref|ZP_05436034.1| dihydropyrimidine dehydrogenase [Escherichia sp. 4_1_40B]
 gi|260844753|ref|YP_003222531.1| putative oxidoreductase [Escherichia coli O103:H2 str. 12009]
 gi|261223394|ref|ZP_05937675.1| predicted oxidoreductase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261259056|ref|ZP_05951589.1| putative oxidoreductase [Escherichia coli O157:H7 str. FRIK966]
 gi|291283401|ref|YP_003500219.1| putative oxidoreductase [Escherichia coli O55:H7 str. CB9615]
 gi|297517340|ref|ZP_06935726.1| dihydropyrimidine dehydrogenase [Escherichia coli OP50]
 gi|300930376|ref|ZP_07145785.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 187-1]
 gi|300950094|ref|ZP_07164041.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 116-1]
 gi|300955831|ref|ZP_07168172.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 175-1]
 gi|301644164|ref|ZP_07244172.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 146-1]
 gi|307138806|ref|ZP_07498162.1| dihydropyrimidine dehydrogenase [Escherichia coli H736]
 gi|312973604|ref|ZP_07787776.1| uncharacterized protein yeiA [Escherichia coli 1827-70]
 gi|331642772|ref|ZP_08343907.1| putative oxidoreductase [Escherichia coli H736]
 gi|331683824|ref|ZP_08384420.1| putative oxidoreductase [Escherichia coli H299]
 gi|3183568|sp|P25889|YEIA_ECOLI RecName: Full=Uncharacterized protein yeiA
 gi|85675261|dbj|BAE76624.1| predicted oxidoreductase [Escherichia coli str. K12 substr. W3110]
 gi|87082059|gb|AAC75208.2| Dihydropyrimidine dehydrogenase, NADH-dependent, subunit B
           [Escherichia coli str. K-12 substr. MG1655]
 gi|157067307|gb|ABV06562.1| dihydroorotate dehydrogenase family protein [Escherichia coli HS]
 gi|169889605|gb|ACB03312.1| predicted oxidoreductase [Escherichia coli str. K-12 substr. DH10B]
 gi|187771295|gb|EDU35139.1| dihydroorotate dehydrogenase family protein [Escherichia coli
           O157:H7 str. EC4196]
 gi|188015281|gb|EDU53403.1| dihydroorotate dehydrogenase family protein [Escherichia coli
           O157:H7 str. EC4113]
 gi|188491295|gb|EDU66398.1| dihydroorotate dehydrogenase family protein [Escherichia coli
           53638]
 gi|189001874|gb|EDU70860.1| dihydroorotate dehydrogenase family protein [Escherichia coli
           O157:H7 str. EC4076]
 gi|189355322|gb|EDU73741.1| dihydroorotate dehydrogenase family protein [Escherichia coli
           O157:H7 str. EC4401]
 gi|189362895|gb|EDU81314.1| dihydroorotate dehydrogenase family protein [Escherichia coli
           O157:H7 str. EC4486]
 gi|189366084|gb|EDU84500.1| dihydroorotate dehydrogenase family protein [Escherichia coli
           O157:H7 str. EC4501]
 gi|189371361|gb|EDU89777.1| dihydroorotate dehydrogenase family protein [Escherichia coli
           O157:H7 str. EC869]
 gi|189376637|gb|EDU95053.1| dihydroorotate dehydrogenase family protein [Escherichia coli
           O157:H7 str. EC508]
 gi|192931943|gb|EDV84542.1| dihydroorotate dehydrogenase family protein [Escherichia coli E22]
 gi|192955608|gb|EDV86085.1| dihydroorotate dehydrogenase family protein [Escherichia coli
           E110019]
 gi|194414806|gb|EDX31077.1| dihydroorotate dehydrogenase family protein [Escherichia coli B171]
 gi|194424744|gb|EDX40729.1| dihydroorotate dehydrogenase family protein [Escherichia coli
           101-1]
 gi|208726988|gb|EDZ76589.1| dihydroorotate dehydrogenase family protein [Escherichia coli
           O157:H7 str. EC4206]
 gi|208735466|gb|EDZ84153.1| dihydroorotate dehydrogenase family protein [Escherichia coli
           O157:H7 str. EC4045]
 gi|208739634|gb|EDZ87316.1| dihydroorotate dehydrogenase family protein [Escherichia coli
           O157:H7 str. EC4042]
 gi|209157737|gb|ACI35170.1| dihydroorotate dehydrogenase family protein [Escherichia coli
           O157:H7 str. EC4115]
 gi|217319752|gb|EEC28177.1| dihydroorotate dehydrogenase family protein [Escherichia coli
           O157:H7 str. TW14588]
 gi|238862745|gb|ACR64743.1| predicted oxidoreductase [Escherichia coli BW2952]
 gi|242377789|emb|CAQ32552.1| NADH-dependent dihydropyrimidine dehydrogenase subunit, subunit of
           NAD-dependent dihydropyrimidine dehydrogenase
           [Escherichia coli BL21(DE3)]
 gi|253323970|gb|ACT28572.1| dihydroorotate dehydrogenase family protein [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253974062|gb|ACT39733.1| dihydropyrimidine dehydrogenase [Escherichia coli B str. REL606]
 gi|253978230|gb|ACT43900.1| dihydropyrimidine dehydrogenase [Escherichia coli BL21(DE3)]
 gi|254593446|gb|ACT72807.1| predicted oxidoreductase [Escherichia coli O157:H7 str. TW14359]
 gi|257759900|dbj|BAI31397.1| predicted oxidoreductase [Escherichia coli O103:H2 str. 12009]
 gi|260448759|gb|ACX39181.1| dihydroorotate dehydrogenase family protein [Escherichia coli DH1]
 gi|290763274|gb|ADD57235.1| putative oxidoreductase [Escherichia coli O55:H7 str. CB9615]
 gi|300317298|gb|EFJ67082.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 175-1]
 gi|300450584|gb|EFK14204.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 116-1]
 gi|300461698|gb|EFK25191.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 187-1]
 gi|301077462|gb|EFK92268.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 146-1]
 gi|310332199|gb|EFP99434.1| uncharacterized protein yeiA [Escherichia coli 1827-70]
 gi|315136780|dbj|BAJ43939.1| putative oxidoreductase [Escherichia coli DH1]
 gi|320192230|gb|EFW66875.1| dihydropyrimidine dehydrogenase [Escherichia coli O157:H7 str.
           EC1212]
 gi|320641218|gb|EFX10696.1| dihydropyrimidine dehydrogenase subunit B [Escherichia coli O157:H7
           str. G5101]
 gi|320646606|gb|EFX15517.1| dihydropyrimidine dehydrogenase subunit B [Escherichia coli O157:H-
           str. 493-89]
 gi|320651861|gb|EFX20236.1| dihydropyrimidine dehydrogenase subunit B [Escherichia coli O157:H-
           str. H 2687]
 gi|320657585|gb|EFX25383.1| dihydropyrimidine dehydrogenase subunit B [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320663191|gb|EFX30500.1| dihydropyrimidine dehydrogenase subunit B [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320667942|gb|EFX34845.1| dihydropyrimidine dehydrogenase subunit B [Escherichia coli O157:H7
           str. LSU-61]
 gi|323161774|gb|EFZ47655.1| hypothetical protein ECE128010_2020 [Escherichia coli E128010]
 gi|323168713|gb|EFZ54393.1| hypothetical protein SS53G_1042 [Shigella sonnei 53G]
 gi|323936761|gb|EGB33046.1| dihydroorotate dehydrogenase [Escherichia coli E1520]
 gi|323940784|gb|EGB36972.1| dihydroorotate dehydrogenase [Escherichia coli E482]
 gi|323961611|gb|EGB57217.1| dihydroorotate dehydrogenase [Escherichia coli H489]
 gi|323972971|gb|EGB68168.1| dihydroorotate dehydrogenase [Escherichia coli TA007]
 gi|324118013|gb|EGC11912.1| dihydroorotate dehydrogenase [Escherichia coli E1167]
 gi|326339497|gb|EGD63308.1| dihydropyrimidine dehydrogenase [Escherichia coli O157:H7 str.
           1125]
 gi|326343958|gb|EGD67719.1| dihydropyrimidine dehydrogenase [Escherichia coli O157:H7 str.
           1044]
 gi|331039570|gb|EGI11790.1| putative oxidoreductase [Escherichia coli H736]
 gi|331078776|gb|EGI49978.1| putative oxidoreductase [Escherichia coli H299]
 gi|332343925|gb|AEE57259.1| conserved hypothetical protein [Escherichia coli UMNK88]
          Length = 411

 Score = 47.0 bits (110), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +       ++C+ C  C   C         G +  + + +T     +  K
Sbjct: 324 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 378 CVGCLLCGHVCPVGCIELG 396


>gi|328470297|gb|EGF41208.1| formate dehydrogenase, alpha subunit [Vibrio parahaemolyticus
           10329]
          Length = 1387

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 29/84 (34%), Gaps = 19/84 (22%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM------------------ 100
              RCI+C  C   C  QA+            R  +R D                     
Sbjct: 601 DANRCISCGQCIQACREQAVHGVLSFVSDKNGRPALRPDDRPRFRSDEKGVGCSGLTLMG 660

Query: 101 -IKCIYCGLCQEACPVDAIVEGPN 123
             KC+ CG C +ACP  A+V+  +
Sbjct: 661 DSKCVQCGACVQACPTGAMVDSRD 684



 Score = 34.3 bits (77), Expect = 5.5,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 22/72 (30%), Gaps = 4/72 (5%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P ++       +G         G+ +C+ C  C   CP  A+                  
Sbjct: 638 PDDRPRFRSDEKGVGCSGLTLMGDSKCVQCGACVQACPTGAMVDSRDRSQGRTEHLKAVD 697

Query: 97  DIDMIKCIYCGL 108
            I    C YCG+
Sbjct: 698 TI----CTYCGV 705


>gi|323171798|gb|EFZ57442.1| hypothetical protein ECLT68_3438 [Escherichia coli LT-68]
          Length = 411

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +       ++C+ C  C   C         G +  + + +T     +  K
Sbjct: 324 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 378 CVGCLLCGHVCPVGCIELG 396


>gi|309702460|emb|CBJ01786.1| putative oxidoreductase, 4Fe-4S binding subunit [Escherichia coli
           ETEC H10407]
          Length = 411

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +       ++C+ C  C   C         G +  + + +T     +  K
Sbjct: 324 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 378 CVGCLLCGHVCPVGCIELG 396


>gi|310642616|ref|YP_003947374.1| pyruvate:ferredoxin oxidoreductase and like 2-oxoacid:ferredoxin
           oxidoreductase gamma subunit-like protein [Paenibacillus
           polymyxa SC2]
 gi|309247566|gb|ADO57133.1| Pyruvate:ferredoxin oxidoreductase and like 2-oxoacid:ferredoxin
           oxidoreductase gamma subunit-like protein [Paenibacillus
           polymyxa SC2]
          Length = 337

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 2/76 (2%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               ++C  C  C++ICP      E       G        ID   C  C  C + CP  
Sbjct: 250 EYEADKCTHCAKCDSICPDYCFVWE-EQADKRGRMMPFLQGIDYQYCKGCLKCVDICPSG 308

Query: 117 AIVEGPN-FEFATETR 131
           A+      + +A + R
Sbjct: 309 ALSSRREQWGWAEQNR 324


>gi|291544447|emb|CBL17556.1| electron transport complex, RnfABCDGE type, B subunit [Ruminococcus
           sp. 18P13]
          Length = 266

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 11/61 (18%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           + +  CI CK+CE  C + AIT+                 ID  KC  CG+C EACPV A
Sbjct: 212 HCKNGCIGCKICEKKCISGAITVTD-----------FHASIDYAKCTGCGVCYEACPVGA 260

Query: 118 I 118
           I
Sbjct: 261 I 261


>gi|293415430|ref|ZP_06658073.1| yeiA protein [Escherichia coli B185]
 gi|291433078|gb|EFF06057.1| yeiA protein [Escherichia coli B185]
          Length = 411

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 25/79 (31%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +       ++C+ C  C   C         G +  + + +      +  K
Sbjct: 324 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKIRTPHCNTEK 377

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 378 CVGCLLCGHVCPVGCIELG 396


>gi|261369003|ref|ZP_05981886.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Subdoligranulum
           variabile DSM 15176]
 gi|282568874|gb|EFB74409.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Subdoligranulum
           variabile DSM 15176]
          Length = 247

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 12/72 (16%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
            ++   A    P   +RCI C  C A CP  AI      +                +CI 
Sbjct: 159 PYKPGMARAMVPRTSKRCIDCGRCAAACPTGAIDAADPRQTD------------PARCIG 206

Query: 106 CGLCQEACPVDA 117
           C  C   CPV+A
Sbjct: 207 CMRCVRLCPVEA 218



 Score = 38.2 bits (87), Expect = 0.41,   Method: Composition-based stats.
 Identities = 10/17 (58%), Positives = 11/17 (64%)

Query: 102 KCIYCGLCQEACPVDAI 118
           +CI CG C  ACP  AI
Sbjct: 175 RCIDCGRCAAACPTGAI 191


>gi|209766284|gb|ACI81454.1| putative oxidoreductase [Escherichia coli]
          Length = 413

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +       ++C+ C  C   C         G +  + + +T     +  K
Sbjct: 326 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 379

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 380 CVGCLLCGHVCPVGCIELG 398


>gi|237731407|ref|ZP_04561888.1| electron transport complex protein RnfC [Citrobacter sp. 30_2]
 gi|226906946|gb|EEH92864.1| electron transport complex protein RnfC [Citrobacter sp. 30_2]
          Length = 564

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 35/107 (32%), Gaps = 9/107 (8%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP   I
Sbjct: 373 EEKGCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHNIADCIECGACAWVCP-SNI 430

Query: 119 VEGPNFE------FATETRQELYYD-KERLLNNGDRWESEIVRNIVT 158
                F       +A    ++   + K R      R E E    +  
Sbjct: 431 PLVQYFRQEKAEIYAISQEEKRAAEAKARFEARQARLEREKAARLER 477


>gi|254462393|ref|ZP_05075809.1| formate dehydrogenase, alpha subunit [Rhodobacterales bacterium
           HTCC2083]
 gi|206678982|gb|EDZ43469.1| formate dehydrogenase, alpha subunit [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 925

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 6/77 (7%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACPVDAI 118
           CI C LC   C  +    +       G      +D    +    C+ CG C +ACP  A+
Sbjct: 151 CIQCGLCVRACR-EVQVNDVIGMSGRGQNAYPTFDLADPMGDSTCVACGECVQACPTGAL 209

Query: 119 VEGPNF-EFATETRQEL 134
           +      E     R + 
Sbjct: 210 MPSTVVDENQVGDRADF 226


>gi|146311475|ref|YP_001176549.1| electron transport complex protein RnfC [Enterobacter sp. 638]
 gi|145318351|gb|ABP60498.1| electron transport complex, RnfABCDGE type, C subunit [Enterobacter
           sp. 638]
          Length = 673

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/108 (24%), Positives = 40/108 (37%), Gaps = 9/108 (8%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ CI C  C   CPA  +  +       G         ++  CI CG C   CP  +I
Sbjct: 373 EEKGCIRCSACADACPAD-LLPQQLYWFSKGQLHDKAKAHNLADCIECGACAWVCP-SSI 430

Query: 119 VEGPNFEFATETRQELY---YDKERLLNNGDRWESEIVRNIVTDSPYR 163
                F    + + E+Y    + +R      R+E+   R +  D   R
Sbjct: 431 PLVQYFR---QEKAEIYAISLEDKRAAEAKARFEARQAR-LERDKIAR 474


>gi|1888325|gb|AAB49653.1| pyruvate:ferredoxin oxidoreductase [Entamoeba histolytica]
          Length = 1162

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 31/87 (35%), Gaps = 16/87 (18%)

Query: 58  NGEERCIACKLCEAICPAQAITI------ESGPRCHDGTR---------RTVRYDIDMIK 102
               +C+ C +C   CP  AI        ES     +  +            R  +  + 
Sbjct: 678 WEASKCVQCNMCSLYCPHAAIRCFYLTPEESAKAPAEFVQIDGKAQQAGYKFRIQVSAMD 737

Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATE 129
           C  C +C  ACPV  +   P FE  +E
Sbjct: 738 CTGCEVCTTACPVKCLSMTP-FEQVSE 763


>gi|12516464|gb|AAG57285.1|AE005446_13 putative oxidoreductase [Escherichia coli O157:H7 str. EDL933]
 gi|13362508|dbj|BAB36462.1| putative oxidoreductase [Escherichia coli O157:H7 str. Sakai]
 gi|73856146|gb|AAZ88853.1| putative oxidoreductase [Shigella sonnei Ss046]
 gi|209766278|gb|ACI81451.1| putative oxidoreductase [Escherichia coli]
 gi|209766280|gb|ACI81452.1| putative oxidoreductase [Escherichia coli]
 gi|209766282|gb|ACI81453.1| putative oxidoreductase [Escherichia coli]
 gi|209766286|gb|ACI81455.1| putative oxidoreductase [Escherichia coli]
          Length = 413

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +       ++C+ C  C   C         G +  + + +T     +  K
Sbjct: 326 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 379

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 380 CVGCLLCGHVCPVGCIELG 398


>gi|238787192|ref|ZP_04630992.1| Pyruvate-flavodoxin oxidoreductase [Yersinia frederiksenii ATCC
           33641]
 gi|238724980|gb|EEQ16620.1| Pyruvate-flavodoxin oxidoreductase [Yersinia frederiksenii ATCC
           33641]
          Length = 1177

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 36/150 (24%), Gaps = 34/150 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A        + C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSAFPPDGTWPVGTTQWEKRNIAEDIPIWQPDLCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHD----------------GTRRTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPAAMAGAPDSLQSLDVKARDMRGQKYVLQVAPEDCTGCNLCYEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETRQ--ELYYD 137
                  AI   P  E   E +   + + +
Sbjct: 760 RQNPEIRAINMKPRLEHLVEEKAHYDFFLN 789


>gi|332296470|ref|YP_004438393.1| Cobyrinic acid ac-diamide synthase [Thermodesulfobium narugense DSM
           14796]
 gi|332179573|gb|AEE15262.1| Cobyrinic acid ac-diamide synthase [Thermodesulfobium narugense DSM
           14796]
          Length = 291

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 10/81 (12%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
             S      ++       +E+CI C  C+ +C   AI  +S  +          + ++  
Sbjct: 51  PISIEKHEFYSGHIAKINQEKCIGCSTCKNLCRFDAIKEDSNGK----------FSVEPT 100

Query: 102 KCIYCGLCQEACPVDAIVEGP 122
            C  C +C E CP  AI    
Sbjct: 101 SCEGCKVCVEFCPEKAIDFPD 121


>gi|330446484|ref|ZP_08310136.1| electron transport complex, RnfABCDGE type, B subunit
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490675|dbj|GAA04633.1| electron transport complex, RnfABCDGE type, B subunit
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 194

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 27/78 (34%), Gaps = 10/78 (12%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E+ CI C  C   CP  AI   +             + +   +C  C LC   CP D
Sbjct: 108 FIHEDMCIGCTKCIQACPVDAIVGGTK----------SMHTVIKDECTGCDLCVSPCPTD 157

Query: 117 AIVEGPNFEFATETRQEL 134
            I   P  E     + +L
Sbjct: 158 CIEMIPVEETPDNWKWQL 175


>gi|326575679|gb|EGE25602.1| RnfABCDGE type electron transport complex subunit B [Moraxella
           catarrhalis CO72]
          Length = 275

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 28/100 (28%), Gaps = 12/100 (12%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            +       T    P +        R +    R    E  CI C  C   CP  AI   +
Sbjct: 80  TIANILNKPTKPATPSQWQIDPQTNRPKEV--RAIIQEADCIGCTKCIPACPVDAIVGTA 137

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                          I    C  C LC   CPVD I   P
Sbjct: 138 KHMHS----------IITDLCTGCELCLAPCPVDCIDVIP 167


>gi|317487131|ref|ZP_07945934.1| indolepyruvate ferredoxin oxidoreductase [Bilophila wadsworthia
           3_1_6]
 gi|316921615|gb|EFV42898.1| indolepyruvate ferredoxin oxidoreductase [Bilophila wadsworthia
           3_1_6]
          Length = 590

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 6/61 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIE-SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
             ++CIAC  C     +   ++  S  +     +R  R  I+ + C+ CG+C + CPV A
Sbjct: 529 DADKCIACGKC---IQSGCPSVVLSDEKHPRTGKRKAR--IEPVTCVGCGICAQICPVHA 583

Query: 118 I 118
           I
Sbjct: 584 I 584


>gi|302391326|ref|YP_003827146.1| electron transport complex, RnfABCDGE type, B subunit
           [Acetohalobium arabaticum DSM 5501]
 gi|302203403|gb|ADL12081.1| electron transport complex, RnfABCDGE type, B subunit
           [Acetohalobium arabaticum DSM 5501]
          Length = 423

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 33/95 (34%), Gaps = 15/95 (15%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNG-----EERCIACKLCEAICPAQAITIESGP 84
              TI  P  K   S     E               E C+ C +C   CP  AI+ E G 
Sbjct: 258 PMDTIEAPKAKDQVSAVDETEETDTGDDRECSIYITEECVGCGVCVEECPVDAISSEDGE 317

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
                      ++ID   CI C  C E CP DAI 
Sbjct: 318 ----------IHNIDPEVCIECENCVEVCPTDAIQ 342



 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 10/64 (15%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 E C+ C +C   CP  AI+ E G            ++ID   CI C  C E CP
Sbjct: 367 CSIYITEECVGCGVCVEECPVDAISGEDGE----------IHNIDPEVCIECENCVEVCP 416

Query: 115 VDAI 118
            +AI
Sbjct: 417 TEAI 420



 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 9/72 (12%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR---------TVRYDIDMIKCIYC 106
           +    E CI C+ C  +CP  AI  + G                           +C+ C
Sbjct: 319 HNIDPEVCIECENCVEVCPTDAIQSKEGETEEAEKTNSNDAAEEDDHECSIYITEECVGC 378

Query: 107 GLCQEACPVDAI 118
           G+C E CPVDAI
Sbjct: 379 GVCVEECPVDAI 390



 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/60 (41%), Positives = 30/60 (50%), Gaps = 11/60 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +  CI C +CE  CP  AITIE                ID  +CI CG+C EACP+D I
Sbjct: 214 CKTGCIGCGVCETKCPVDAITIEDNLAV-----------IDYEECINCGVCAEACPMDTI 262



 Score = 41.6 bits (96), Expect = 0.035,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 5/68 (7%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCIYCGLCQEACPV 115
           + C  C  C   CP    T+    +                +     CI CG+C+  CPV
Sbjct: 171 DECTGCGNCVEECPKGLFTLVEEGQEVFIHCSSHSGGKDVKEACKTGCIGCGVCETKCPV 230

Query: 116 DAIVEGPN 123
           DAI    N
Sbjct: 231 DAITIEDN 238



 Score = 37.4 bits (85), Expect = 0.68,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 10/59 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
            +    C+    CEA+C   AI +                 +   +C  CG C E CP 
Sbjct: 137 KSCVYGCLGFGDCEAVCSFDAIKMNENGLPE----------VIADECTGCGNCVEECPK 185


>gi|300704663|ref|YP_003746266.1| 4fe-4S ferredoxin, iron-sulfur binding [Ralstonia solanacearum
           CFBP2957]
 gi|299072327|emb|CBJ43661.1| 4Fe-4S ferredoxin, iron-sulphur binding [Ralstonia solanacearum
           CFBP2957]
          Length = 268

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 22/64 (34%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E CI C LC   CP  AI                 + +    C  C LC   CPVD I
Sbjct: 86  DPEHCIGCTLCIQACPVDAIVGAPK----------AMHVVLADWCTGCDLCVAPCPVDCI 135

Query: 119 VEGP 122
              P
Sbjct: 136 DMVP 139



 Score = 38.9 bits (89), Expect = 0.25,   Method: Composition-based stats.
 Identities = 14/21 (66%), Positives = 15/21 (71%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C LC +ACPVDAI
Sbjct: 85  IDPEHCIGCTLCIQACPVDAI 105


>gi|294102298|ref|YP_003554156.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Aminobacterium colombiense DSM 12261]
 gi|293617278|gb|ADE57432.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Aminobacterium colombiense DSM 12261]
          Length = 108

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 9/70 (12%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
             E+ CI+C LC   CP ++IT +   +            +D   C  CG+C + CP  A
Sbjct: 48  WNEDECISCMLCWVQCPDRSITTDENGKVTG---------VDYFYCKGCGICAQVCPKKA 98

Query: 118 IVEGPNFEFA 127
           I   P  EFA
Sbjct: 99  IEMRPEAEFA 108


>gi|260550717|ref|ZP_05824925.1| electron transport complex [Acinetobacter sp. RUH2624]
 gi|260406223|gb|EEW99707.1| electron transport complex [Acinetobacter sp. RUH2624]
          Length = 263

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 28/87 (32%), Gaps = 10/87 (11%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P E      +  G     +    E+ CI C  C   CP  AI               + +
Sbjct: 66  PAETSVWPVQADGRPQRMKAIIREDECIGCTKCINACPVDAIIGSGK----------LMH 115

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPN 123
            I    C  C LC   CPVD I    +
Sbjct: 116 TILTDLCTGCELCIPPCPVDCIDLVED 142


>gi|291287814|ref|YP_003504630.1| electron transport complex, RnfABCDGE type, B subunit
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290884974|gb|ADD68674.1| electron transport complex, RnfABCDGE type, B subunit
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 267

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 32/89 (35%), Gaps = 11/89 (12%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
            K     P +K         +         +  CI C++CE  CP  AI ++S       
Sbjct: 180 RKLIKLIPEDKPFVVACMSKDKGPDVKKACKVGCIGCRMCEKKCPVGAIDVDSFLAV--- 236

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                   ID   CI CG C+  CP  AI
Sbjct: 237 --------IDPAPCIACGECERVCPTGAI 257



 Score = 37.4 bits (85), Expect = 0.64,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 19/65 (29%), Gaps = 10/65 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C+    C   C   A+ + S               I   KC  CG C  ACP   I
Sbjct: 134 CTYACVGEGSCVKSCAFDAMYMGSDGIPV----------IIPDKCTSCGKCVAACPRKLI 183

Query: 119 VEGPN 123
              P 
Sbjct: 184 KLIPE 188



 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 5/64 (7%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEACP 114
            ++C +C  C A CP + I +    +          +         + CI C +C++ CP
Sbjct: 165 PDKCTSCGKCVAACPRKLIKLIPEDKPFVVACMSKDKGPDVKKACKVGCIGCRMCEKKCP 224

Query: 115 VDAI 118
           V AI
Sbjct: 225 VGAI 228


>gi|212711766|ref|ZP_03319894.1| hypothetical protein PROVALCAL_02841 [Providencia alcalifaciens DSM
           30120]
 gi|212685288|gb|EEB44816.1| hypothetical protein PROVALCAL_02841 [Providencia alcalifaciens DSM
           30120]
          Length = 200

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 22/64 (34%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            EE CI C  C   CP  AI   +             + +    C  C LC   CP D I
Sbjct: 113 DEENCIGCTKCIQACPVDAIVGAT----------RAMHTVIEDLCTGCDLCVAPCPTDCI 162

Query: 119 VEGP 122
              P
Sbjct: 163 EMVP 166



 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C  C +ACPVDAI
Sbjct: 112 IDEENCIGCTKCIQACPVDAI 132


>gi|193216242|ref|YP_001997441.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Chloroherpeton thalassium ATCC 35110]
 gi|193089719|gb|ACF14994.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Chloroherpeton thalassium ATCC 35110]
          Length = 98

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 32/95 (33%), Positives = 37/95 (38%), Gaps = 13/95 (13%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYC------GLCQ 110
           E CI C  C   CP  AI     P    G       D    I   KC  C        C 
Sbjct: 7   EECINCSACIPECPNTAIYEPGDPWELFGESYESLNDEITYIVPDKCTECVGHHEEPQCV 66

Query: 111 EACPVDAIVEGPNFEFATETRQELYYDKERLLNNG 145
             CP D IV  PNF    E++++L   KE L +NG
Sbjct: 67  PVCPSDCIVPDPNFN---ESKEDLLAKKEALESNG 98


>gi|113868895|ref|YP_727384.1| ferredoxin [Ralstonia eutropha H16]
 gi|113527671|emb|CAJ94016.1| Ferredoxin [Ralstonia eutropha H16]
          Length = 721

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 9/64 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              +C  C  C   CP+QA+             R          C+ CGLC++ CP DAI
Sbjct: 586 DTGKCTMCMACVGACPSQALRDNPERPVLSFIERN---------CVQCGLCEKTCPEDAI 636

Query: 119 VEGP 122
              P
Sbjct: 637 SLVP 640



 Score = 41.2 bits (95), Expect = 0.044,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 7/64 (10%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           +G  +   C  C  IC  +AI                R ++    C+ CG C   CP  A
Sbjct: 335 HGRNQTTGCTACIDICSTEAI-------GSRWHDGKGRIEVTPNLCMGCGACTTVCPSGA 387

Query: 118 IVEG 121
           I  G
Sbjct: 388 ISYG 391



 Score = 38.2 bits (87), Expect = 0.44,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           ID+  C  C  C +ACP DAI      + +
Sbjct: 215 IDLDLCTRCNACIDACPEDAIDFSYQIDLS 244


>gi|39996191|ref|NP_952142.1| iron-sulfur cluster-binding protein [Geobacter sulfurreducens PCA]
 gi|39982956|gb|AAR34415.1| iron-sulfur cluster-binding protein [Geobacter sulfurreducens PCA]
 gi|298505204|gb|ADI83927.1| iron-sulfur cluster-binding oxidoreductase [Geobacter
           sulfurreducens KN400]
          Length = 368

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 23/78 (29%), Gaps = 17/78 (21%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C  C LC   C   AI I  G              ID   C  C  C   CP  AI  
Sbjct: 193 KYCTGCGLCLKACAHDAIAIIEGKA-----------KIDPKACAGCSRCITVCPTKAITI 241

Query: 121 GPNFEFATETRQELYYDK 138
             N         +L   K
Sbjct: 242 QWNEA------ADLVMKK 253


>gi|45358387|ref|NP_987944.1| coenzyme F420-non-reducing hydrogenase subunit beta [Methanococcus
           maripaludis S2]
 gi|44921145|emb|CAF30380.1| coenzyme F420-non-reducing hydrogenase subunit beta [Methanococcus
           maripaludis S2]
          Length = 397

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 31/72 (43%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
             EE+C  C  C   CP  AIT+ +       +R+      +   CI CG C ++CP DA
Sbjct: 265 WDEEKCAYCGPCAIKCPNNAITVVNPKGLEMPSRKKTEKANEFKMCIRCGACVQSCPNDA 324

Query: 118 IVEGPNFEFATE 129
           +  G       E
Sbjct: 325 LRIGKIIHNGKE 336



 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++ CI C +C   CP  AI   +G +     +  V++ +D   CI CG C + CP D I
Sbjct: 160 DKDSCIYCSICAQTCPWNAIF-VAGKKSPKRDKNIVKFSVDSDLCIGCGDCTDKCPRDLI 218

Query: 119 VE 120
           V 
Sbjct: 219 VL 220



 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 3/64 (4%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           N  + CI C  C   CP  A+ I    +     +   R +     C  CG C E CP D 
Sbjct: 305 NEFKMCIRCGACVQSCPNDALRI---GKIIHNGKEYERIEFSPNLCDSCGKCIETCPYDM 361

Query: 118 IVEG 121
           +   
Sbjct: 362 LKLT 365



 Score = 38.2 bits (87), Expect = 0.40,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 3/57 (5%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           N  + C  C  C  +CP  A+ +          ++   +     KC  CG C + CP
Sbjct: 27  NPFKVCQLCGNCVNVCPNDALNLREIELNGKTIKQIAYF---PTKCDLCGECVKVCP 80



 Score = 37.0 bits (84), Expect = 0.84,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 26/76 (34%), Gaps = 3/76 (3%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI-DMIKCIYCGLCQEACPVDAIVE 120
            C+ C  C   CP   + +E             +  I     C+ CG+C   CPV A+  
Sbjct: 93  FCVGCMKCVDACPDSYVGMEGVVEPAKRNITLPKEPIAVTEDCVGCGVCISECPVGALSI 152

Query: 121 GPNFEFATETRQELYY 136
               E A   +    Y
Sbjct: 153 --EGEKAVVDKDSCIY 166



 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 11/59 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           E C+ C +C + CP  A++IE                +D   CIYC +C + CP +AI 
Sbjct: 133 EDCVGCGVCISECPVGALSIEGEKAV-----------VDKDSCIYCSICAQTCPWNAIF 180


>gi|194431438|ref|ZP_03063730.1| dihydroorotate dehydrogenase family protein [Shigella dysenteriae
           1012]
 gi|194420263|gb|EDX36340.1| dihydroorotate dehydrogenase family protein [Shigella dysenteriae
           1012]
 gi|332092632|gb|EGI97703.1| hypothetical protein SD15574_2140 [Shigella dysenteriae 155-74]
          Length = 411

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +       ++C+ C  C   C         G +  + + +T     +  K
Sbjct: 324 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 378 CVGCLLCGHVCPVGCIELG 396


>gi|308049947|ref|YP_003913513.1| electron transport complex, RnfABCDGE type, B subunit [Ferrimonas
           balearica DSM 9799]
 gi|307632137|gb|ADN76439.1| electron transport complex, RnfABCDGE type, B subunit [Ferrimonas
           balearica DSM 9799]
          Length = 184

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 25/73 (34%), Gaps = 10/73 (13%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            CI C  C   CP  AI                 + +   +C  C LC E CPVD I   
Sbjct: 113 ECIGCTKCIQACPVDAIIGTGKQ----------MHTVLADQCTGCDLCVEPCPVDCIEMR 162

Query: 122 PNFEFATETRQEL 134
           P        + +L
Sbjct: 163 PIATTTQNWKWDL 175



 Score = 37.8 bits (86), Expect = 0.57,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 22/47 (46%)

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           A  + +E  P   D   R     I   +CI C  C +ACPVDAI+  
Sbjct: 86  ADMLGVEPEPLDADADSRPKVAYIREAECIGCTKCIQACPVDAIIGT 132


>gi|119719093|ref|YP_919588.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermofilum pendens Hrk 5]
 gi|119524213|gb|ABL77585.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermofilum
           pendens Hrk 5]
          Length = 455

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 31/96 (32%), Gaps = 7/96 (7%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C  C  C   CP +A+   +       +   V       +CI C  C E CP DA+  
Sbjct: 322 DSCTLCGACAKNCPEKALNAVA-------SSGRVELRFYPWRCIGCRECVEVCPEDAVEI 374

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNI 156
                 A  +R E        +    +   EI    
Sbjct: 375 DRAANPALMSRHEHIVLSSSEMARCSKCGREIAPEK 410


>gi|194332884|ref|YP_002014744.1| putative glutamate synthase (NADPH) small subunit [Prosthecochloris
           aestuarii DSM 271]
 gi|194310702|gb|ACF45097.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Prosthecochloris aestuarii DSM 271]
          Length = 578

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 6/59 (10%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           C  CK C + CP +AI+        +G +    Y     KC+ C LC   CP   I  G
Sbjct: 521 CFDCKQCVSFCPQEAISRFRD--NPEGEKVYTNY----AKCVGCHLCSLVCPSGYIQMG 573


>gi|299149360|ref|ZP_07042417.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides sp.
           3_1_23]
 gi|298512547|gb|EFI36439.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides sp.
           3_1_23]
          Length = 1182

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 28/81 (34%), Gaps = 15/81 (18%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG  A     N  E CI C  C  +CP                A   +           T
Sbjct: 676 RGVAAFVPEWN-PENCIQCNKCAYVCPHASIRPFVLDAEEQKGAKFEQLKAVGKVFDGMT 734

Query: 94  VRYDIDMIKCIYCGLCQEACP 114
            R  +D++ C+ CG C + CP
Sbjct: 735 FRIQVDVLDCLGCGNCADICP 755


>gi|322419375|ref|YP_004198598.1| hydrogenase, Fe-only [Geobacter sp. M18]
 gi|320125762|gb|ADW13322.1| hydrogenase, Fe-only [Geobacter sp. M18]
          Length = 586

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 59  GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115
             ++C+ C+ CE +C   Q   + SG            +++++    C  CG C   CPV
Sbjct: 149 DMDKCVMCRRCETMCNDVQTCNVLSGVNRGFNAVVAPAFEMNLADSGCTNCGQCVAVCPV 208

Query: 116 DAIVEGP 122
            A+ E  
Sbjct: 209 GALAEKD 215


>gi|183230217|ref|XP_657019.2| pyruvate:ferredoxin oxidoreductase [Entamoeba histolytica
           HM-1:IMSS]
 gi|169803031|gb|EAL51636.2| pyruvate:ferredoxin oxidoreductase [Entamoeba histolytica
           HM-1:IMSS]
          Length = 1162

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 31/87 (35%), Gaps = 16/87 (18%)

Query: 58  NGEERCIACKLCEAICPAQAITI------ESGPRCHDGTR---------RTVRYDIDMIK 102
               +C+ C +C   CP  AI        ES     +  +            R  +  + 
Sbjct: 678 WEASKCVQCNMCSLYCPHAAIRCFYLTPEESAKAPAEFVQIDGKAQQAGYKFRIQVSAMD 737

Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATE 129
           C  C +C  ACPV  +   P FE  +E
Sbjct: 738 CTGCEVCTTACPVKCLSMTP-FEQVSE 763


>gi|167945833|ref|ZP_02532907.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Endoriftia persephone 'Hot96_1+Hot96_2']
          Length = 218

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/112 (20%), Positives = 37/112 (33%), Gaps = 25/112 (22%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAI---------------TIESGPRCHDGTRRTV 94
              L+      + C  C  C  +CP  AI               +  S P    G  + +
Sbjct: 103 NIGLQWPKLEIDLCTHCGKCPLVCPHAAIRSKVFREADLADAPASFRSAPVNGGGFEKGL 162

Query: 95  R--YDIDMIKCIYCGLCQEACPVD--------AIVEGPNFEFATETRQELYY 136
           R  Y +    C  CGLC E CP+         A+    + ++  + R    +
Sbjct: 163 RITYQVAPDDCTGCGLCVEICPIRDRQNPKRKALNMVDDPDYQEQERANWAF 214


>gi|163749656|ref|ZP_02156903.1| hypothetical NADPH-dependent glutamate synthase [Shewanella
           benthica KT99]
 gi|161330766|gb|EDQ01703.1| hypothetical NADPH-dependent glutamate synthase [Shewanella
           benthica KT99]
          Length = 543

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 24/85 (28%), Gaps = 3/85 (3%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P E+        G    +      +RC +C  C       A              +   
Sbjct: 456 DPVERRKNFDEVLGGLTEQEALYEAQRCYSCGNCFECNGCLAACPHGAI---TYLGKGKG 512

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVE 120
           Y +D  KC  C  C   CP  AI  
Sbjct: 513 YKVDYDKCTGCNACYSQCPCHAIEM 537


>gi|258405327|ref|YP_003198069.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfohalobium retbaense DSM 5692]
 gi|257797554|gb|ACV68491.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfohalobium retbaense DSM 5692]
          Length = 345

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 37/118 (31%), Gaps = 29/118 (24%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           +G F   ++       T     E          +H L      E+ C AC  C   C   
Sbjct: 155 LGGFGGAIKNLGMGGVTKKTKLE----------QHRLIDLVIDEDACQACGACVDACWFD 204

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134
              IE+               ID  +C+ C +C   CP  AI          E R++L
Sbjct: 205 LPRIEND-----------CVVIDSPECMRCPICSTTCPEGAIRL--------ENREKL 243


>gi|261367693|ref|ZP_05980576.1| RnfB/polyferredoxin [Subdoligranulum variabile DSM 15176]
 gi|282570487|gb|EFB76022.1| RnfB/polyferredoxin [Subdoligranulum variabile DSM 15176]
          Length = 278

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 28/91 (30%), Gaps = 11/91 (12%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
            K     P            +         +  CIAC LC   CP QAI +         
Sbjct: 181 RKVIQMKPIAPQPAVKCSNKDKGAVVNKTCKVGCIACGLCVRNCPQQAIFL--------- 231

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             +     ID  KC  CG C   CP  AI  
Sbjct: 232 --KDNVAVIDYTKCNGCGTCVSKCPKKAIQW 260



 Score = 41.2 bits (95), Expect = 0.043,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 5/78 (6%)

Query: 59  GEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
              +C  C  C A+CP + I +     +   +C +  +  V      + CI CGLC   C
Sbjct: 165 DRSKCTGCTACTAVCPRKVIQMKPIAPQPAVKCSNKDKGAVVNKTCKVGCIACGLCVRNC 224

Query: 114 PVDAIVEGPNFEFATETR 131
           P  AI    N      T+
Sbjct: 225 PQQAIFLKDNVAVIDYTK 242


>gi|255693780|ref|ZP_05417455.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides
           finegoldii DSM 17565]
 gi|260620403|gb|EEX43274.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides
           finegoldii DSM 17565]
          Length = 1182

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 28/81 (34%), Gaps = 15/81 (18%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG  A     N  E CI C  C  +CP                A   +           T
Sbjct: 676 RGVAAFVPEWN-PENCIQCNKCAYVCPHASIRPFVLDAEEQKGAKFEQLKAVGKVFDGMT 734

Query: 94  VRYDIDMIKCIYCGLCQEACP 114
            R  +D++ C+ CG C + CP
Sbjct: 735 FRIQVDVLDCLGCGNCADICP 755


>gi|255281009|ref|ZP_05345564.1| heterodisulfide reductase, A subunit [Bryantella formatexigens DSM
           14469]
 gi|255268457|gb|EET61662.1| heterodisulfide reductase, A subunit [Bryantella formatexigens DSM
           14469]
          Length = 662

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 1/66 (1%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-DIDMIKCIYCGLCQEACPV 115
            +    C  C  C  +CP  AIT E       G R T R   ++   C  CG C  ACP 
Sbjct: 581 QSDILLCNGCSSCANVCPYGAITYEDREVNDHGIRETRRIAVVNSALCQGCGACTVACPS 640

Query: 116 DAIVEG 121
            A+   
Sbjct: 641 GAMDLQ 646



 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 40/115 (34%), Gaps = 18/115 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIE--------SGPRCHDGTRRTVRYDIDMIKCIY----- 105
             ++C  C +C+  CP++    E        S               ID   CI      
Sbjct: 239 DMDKCTGCGVCQEKCPSRKTPSEFNRGLNTRSAIYTPFAQAIPNVPVIDREHCIKFKTGK 298

Query: 106 CGLCQEACPVDAIVEGPNFEFATETRQELY----YDKERLLNNGDRWESEIVRNI 156
           CG+C + C   AI      E  TE    +     +D  +L +N D +     +++
Sbjct: 299 CGVCAKVCQAGAIDYDQKDEIITEKYGAIVVATGFDTIKL-DNYDEYAYSQSKDV 352


>gi|237808208|ref|YP_002892648.1| electron transport complex, RnfABCDGE type, C subunit [Tolumonas
           auensis DSM 9187]
 gi|237500469|gb|ACQ93062.1| electron transport complex, RnfABCDGE type, C subunit [Tolumonas
           auensis DSM 9187]
          Length = 704

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 2/68 (2%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            + E  CI C  C  +CP + +  +       G         ++  CI CG C   CP  
Sbjct: 373 RDDEMNCIRCSKCAEVCPVKLLPQQLYWYSKAGDHENAE-KYNLSDCIECGACAWVCP-S 430

Query: 117 AIVEGPNF 124
            I     +
Sbjct: 431 NIPLVHYY 438


>gi|81301366|ref|YP_401574.1| bidirectional hydrogenase complex protein HoxU [Synechococcus
           elongatus PCC 7942]
 gi|7433130|pir||S74231 bidirectional hydrogenase chain U - Synechococcus sp. (PCC 6301)
 gi|1708770|emb|CAA66381.1| hoxU [Synechococcus elongatus PCC 6301]
 gi|81170247|gb|ABB58587.1| NAD-reducing hydrogenase HoxS gamma subunit [Synechococcus
           elongatus PCC 7942]
          Length = 238

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 23/74 (31%), Gaps = 4/74 (5%)

Query: 54  RRYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLC 109
           R +     RCI C  C  +C     A   +   R                +  C  CG C
Sbjct: 139 RFFGLDHNRCILCTRCVRVCDEIEGAHVWDVAMRGEHCRIVAGMDQPWGAVDACTNCGKC 198

Query: 110 QEACPVDAIVEGPN 123
            +ACP  A+     
Sbjct: 199 IDACPTGALFHKGE 212



 Score = 35.5 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 8/82 (9%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIAC---KLCEAICPAQAITIESGPRCHDGTRR---- 92
           +     R+R +     +  G   C  C     CE    A A+ ++     +   +R    
Sbjct: 77  RSPRLERYRRQIVELFFAEGNHVCAICVANGNCELQDAAIAVGMDHSRYPYRFPKRDVDL 136

Query: 93  -TVRYDIDMIKCIYCGLCQEAC 113
               + +D  +CI C  C   C
Sbjct: 137 SHRFFGLDHNRCILCTRCVRVC 158


>gi|332093238|gb|EGI98298.1| hypothetical protein SB521682_0944 [Shigella boydii 5216-82]
          Length = 411

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +       ++C+ C  C   C         G +  + + +T     +  K
Sbjct: 324 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 378 CVGCLLCGHVCPVGCIELG 396


>gi|302342952|ref|YP_003807481.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075]
 gi|301639565|gb|ADK84887.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075]
          Length = 596

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 35/96 (36%), Gaps = 15/96 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            LRY F+ +   +   +K       R    L  +   E  C  C  C   CP  AI+ E 
Sbjct: 515 TLRY-FRDEYVAHIVDKKCPA----RTCVNLIEFRVDEALCKKCGQCFKACPVGAISWEK 569

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                          ID+ KCI C  C E C  DAI
Sbjct: 570 KQPAK----------IDLTKCIKCKTCIENCKFDAI 595



 Score = 37.0 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 16/50 (32%)

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
                    I             + + +D   C  CG C +ACPV AI  
Sbjct: 518 YFRDEYVAHIVDKKCPARTCVNLIEFRVDEALCKKCGQCFKACPVGAISW 567


>gi|297618250|ref|YP_003703409.1| NADH dehydrogenase (quinone) [Syntrophothermus lipocalidus DSM
           12680]
 gi|297146087|gb|ADI02844.1| NADH dehydrogenase (quinone) [Syntrophothermus lipocalidus DSM
           12680]
          Length = 605

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 15/96 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            LRY F+ +   +   ++           ++  +      C  C LC+  CPA AI+ E 
Sbjct: 522 TLRY-FRDEYVAHIVEKRCPAGVC----RSMTEFYIDASLCTGCGLCKKNCPADAISGEI 576

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                        + ID  +CI CG C   C   A+
Sbjct: 577 KE----------VHVIDQDRCIKCGECINNCKFQAV 602


>gi|291523456|emb|CBK81749.1| Iron only hydrogenase large subunit, C-terminal domain [Coprococcus
           catus GD/7]
          Length = 487

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 24/70 (34%), Gaps = 6/70 (8%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGL 108
                 ++C  C  C   CP  AI     P         +  D      I+  KCI CG 
Sbjct: 125 HAVIDHKKCKECGKCAEACPYNAIADLMRPCKRSCPVDAITMDEDNIVVINEEKCINCGQ 184

Query: 109 CQEACPVDAI 118
           C   CP  A+
Sbjct: 185 CVINCPFGAL 194



 Score = 40.5 bits (93), Expect = 0.076,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 23/67 (34%), Gaps = 13/67 (19%)

Query: 54  RRYPNGEERCIACK--LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
               N    C  C    C   C   AI  E G              ID  KC  CG C E
Sbjct: 93  INRFNVTNNCQMCMAKKCLGACNFGAIKFEGG-----------HAVIDHKKCKECGKCAE 141

Query: 112 ACPVDAI 118
           ACP +AI
Sbjct: 142 ACPYNAI 148


>gi|282936076|gb|ADB04295.1| putative naphthyl-2-methyl-succinate synthase activating enzyme
           [bacterium enrichment culture clone N47]
          Length = 338

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 10/100 (10%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT--RRTVRYDIDMI 101
                 +  L  + +   +C+ C  C A CP +AI              R      ID  
Sbjct: 48  PECINFQEELFHHAD---KCVRCGTCVAACPEKAIAPPGKRTEKCTEDLRDVKPPIIDRS 104

Query: 102 KCIYCGLCQEACPVDAIV-----EGPNFEFATETRQELYY 136
           KC  C  C + CP +AI         +  F+     +++Y
Sbjct: 105 KCTLCMKCVDVCPQNAITRVSSVMTLDEAFSEIKSDDVFY 144


>gi|227873882|ref|ZP_03992104.1| 4Fe-4S ferredoxin, iron-sulfur binding [Oribacterium sinus F0268]
 gi|227840308|gb|EEJ50716.1| 4Fe-4S ferredoxin, iron-sulfur binding [Oribacterium sinus F0268]
          Length = 276

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 17/118 (14%)

Query: 7   NVSFLFLKEFVGA------FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           N+  +    F+          + L + FK            +   +     +L R    E
Sbjct: 170 NLERIMFWAFLFGNLAYYLVGIALAFLFKDNRAFCKYICPVTVFLKPMSYFSLVRIRCDE 229

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +CI+C  C+ +CP      ++  +  +G             CI C  C + CP  A+
Sbjct: 230 TKCISCGKCKKVCPMDVEMTDNSRKRKNG-----------TDCILCMECVKVCPKGAL 276


>gi|225570605|ref|ZP_03779630.1| hypothetical protein CLOHYLEM_06707 [Clostridium hylemonae DSM
           15053]
 gi|225160618|gb|EEG73237.1| hypothetical protein CLOHYLEM_06707 [Clostridium hylemonae DSM
           15053]
          Length = 628

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 31/69 (44%), Gaps = 10/69 (14%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           ALRR+    ERC  C  C   CPA AI+           +    Y ID  +CI CG C+ 
Sbjct: 568 ALRRFVISPERCRGCSKCARNCPAGAISG----------KIKEPYVIDDTRCIKCGACES 617

Query: 112 ACPVDAIVE 120
           AC   AI  
Sbjct: 618 ACAFGAIHI 626



 Score = 35.1 bits (79), Expect = 3.5,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 12/40 (30%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +              R+ I   +C  C  C   CP  AI
Sbjct: 555 HVVEKKCVSHTCTALRRFVISPERCRGCSKCARNCPAGAI 594


>gi|167755391|ref|ZP_02427518.1| hypothetical protein CLORAM_00905 [Clostridium ramosum DSM 1402]
 gi|167704330|gb|EDS18909.1| hypothetical protein CLORAM_00905 [Clostridium ramosum DSM 1402]
          Length = 371

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 5/96 (5%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           +E+CI C  C   CP      E G   + G +  V   +D   C  C  C E CP  A+V
Sbjct: 255 QEKCIQCAQCYITCPDMVFQFEPG--IYKGRKMMVNKGLDYHHCKGCLRCVEICPTQALV 312

Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRN 155
            G   E +    +    +K+ ++ + D +E     +
Sbjct: 313 SGVEREHS--NLKWFIRNKDLIVEHMD-YEDVGANS 345


>gi|167623859|ref|YP_001674153.1| electron transport complex protein RnfC [Shewanella halifaxensis
           HAW-EB4]
 gi|167353881|gb|ABZ76494.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella
           halifaxensis HAW-EB4]
          Length = 810

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 38/109 (34%), Gaps = 17/109 (15%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLC 109
                 E+ CI C  C   CPA        P+      +   YD     ++  CI CG C
Sbjct: 371 IADDTVEKPCIRCGECAVACPA-----LLLPQQLFWHAKAEEYDKAASFNLHDCIECGCC 425

Query: 110 QEACPVDAIVEGPNFEFA-------TETRQELYYDKERLLNNGDRWESE 151
              CP   I     +  A       TE +++  + K+R      R E E
Sbjct: 426 SFVCP-SDIPLVEYYRIAKSAIRTQTEEKKQADFAKQRFEARLQRLEEE 473


>gi|241662549|ref|YP_002980909.1| ferredoxin [Ralstonia pickettii 12D]
 gi|240864576|gb|ACS62237.1| electron transport complex, RnfABCDGE type, B subunit [Ralstonia
           pickettii 12D]
          Length = 276

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 23/64 (35%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ERCI C LC   CP  AI                 + +    C  C LC   CPVD I
Sbjct: 90  DPERCIGCTLCIQACPVDAIVGAPK----------AMHTVLEDWCTGCDLCVPPCPVDCI 139

Query: 119 VEGP 122
              P
Sbjct: 140 DMIP 143



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/21 (66%), Positives = 16/21 (76%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID  +CI C LC +ACPVDAI
Sbjct: 89  IDPERCIGCTLCIQACPVDAI 109


>gi|124485398|ref|YP_001030014.1| hypothetical protein Mlab_0573 [Methanocorpusculum labreanum Z]
 gi|124362939|gb|ABN06747.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methanocorpusculum labreanum Z]
          Length = 198

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/135 (25%), Positives = 49/135 (36%), Gaps = 21/135 (15%)

Query: 10  FLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69
           F +L+EF    +  L+ FF    T+  P    +    FR    L       + C  C  C
Sbjct: 4   FTYLREFCRLSW--LKAFF----TVKTP--PLTKPSYFRDFPELT-----GKECTHCLAC 50

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           + ICP        G      T       I    C+ CG C EACP D +  G     A +
Sbjct: 51  KMICP------CPGAIDVVQTDGVWNPQITQGHCVRCGYCVEACPEDVLTSGDL--LARK 102

Query: 130 TRQELYYDKERLLNN 144
             Q L +  E ++  
Sbjct: 103 KDQGLVFTHEYIIKI 117



 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 20/73 (27%), Gaps = 8/73 (10%)

Query: 59  GEERCIACKLCEAICPAQ--------AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
               C  C  C   CPA         A    +               +   +C  C +C 
Sbjct: 118 DTNLCTGCGNCSTACPANHEFDPQISAGGTSNSVEGVIRVEFGKNKVMHNERCKGCKVCM 177

Query: 111 EACPVDAIVEGPN 123
           E CP  AI    N
Sbjct: 178 ETCPNGAIHVIRN 190


>gi|159043831|ref|YP_001532625.1| formate dehydrogenase subunit alpha [Dinoroseobacter shibae DFL 12]
 gi|157911591|gb|ABV93024.1| formate dehydrogenase, alpha subunit [Dinoroseobacter shibae DFL
           12]
          Length = 933

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 5/66 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114
             + CI C LC   C  +    +       G      +D    +    C+ CG C +ACP
Sbjct: 152 NLDACIQCGLCVRACR-EVQVNDVIGMAGRGHDAYPVFDLDDPMGDSTCVACGECVQACP 210

Query: 115 VDAIVE 120
             A++E
Sbjct: 211 TGALME 216


>gi|95929042|ref|ZP_01311787.1| 4Fe-4S ferredoxin, iron-sulfur binding [Desulfuromonas acetoxidans
           DSM 684]
 gi|95134943|gb|EAT16597.1| 4Fe-4S ferredoxin, iron-sulfur binding [Desulfuromonas acetoxidans
           DSM 684]
          Length = 384

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 14/120 (11%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
           +IF+     L+   FVG   L   + ++    +  PF     +     + ++ +     +
Sbjct: 265 KIFKPLKLSLWGWGFVGGILLGSLFVYRPWCHLFCPFG---LTGWLFEKLSVFKIKVDYD 321

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           +CI C+ CE  CP+  +                        C  CG C E+CP DA+   
Sbjct: 322 KCIDCRSCEKACPSTVMKAILDQDKRVIP-----------DCFSCGNCLESCPTDAVSFS 370



 Score = 35.1 bits (79), Expect = 2.9,   Method: Composition-based stats.
 Identities = 14/82 (17%), Positives = 20/82 (24%), Gaps = 6/82 (7%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
               PF+                        +    C   CP                + 
Sbjct: 259 HEIDPFKIFKPLKLSLWGWGFVGGILLGSLFVYRPWCHLFCPFGLTGWLFEKLSVFKIK- 317

Query: 93  TVRYDIDMIKCIYCGLCQEACP 114
                +D  KCI C  C++ACP
Sbjct: 318 -----VDYDKCIDCRSCEKACP 334


>gi|322832829|ref|YP_004212856.1| electron transport complex, RnfABCDGE type, B subunit [Rahnella sp.
           Y9602]
 gi|321168030|gb|ADW73729.1| electron transport complex, RnfABCDGE type, B subunit [Rahnella sp.
           Y9602]
          Length = 188

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 21/66 (31%), Gaps = 10/66 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C  C   CP  AI   +             + +    C  C LC   CP D
Sbjct: 110 YIDESNCIGCTKCIQACPVDAIVGAT----------RAVHTVITDLCTGCDLCVAPCPTD 159

Query: 117 AIVEGP 122
            I   P
Sbjct: 160 CIEMLP 165



 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 15/36 (41%)

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           G              ID   CI C  C +ACPVDAI
Sbjct: 96  GEDAAAAVPVRKVAYIDESNCIGCTKCIQACPVDAI 131


>gi|301060597|ref|ZP_07201432.1| 2Fe-2S iron-sulfur cluster binding domain protein [delta
           proteobacterium NaphS2]
 gi|300445300|gb|EFK09230.1| 2Fe-2S iron-sulfur cluster binding domain protein [delta
           proteobacterium NaphS2]
          Length = 693

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 38/112 (33%), Gaps = 10/112 (8%)

Query: 56  YPNGEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           Y    ERCI C+ C  +C       AI + +         +     I    C +C  C E
Sbjct: 137 YIRDLERCILCERCVRMCQEVRGIGAIGLINRGIKTYVGTQNNVP-IMDSGCKFCEACVE 195

Query: 112 ACPVDAIVEGPNFEFATETRQELYYDKERLLNNGD---RWESEIVRNIVTDS 160
            CP  AI++   F   +E R+            G    R+   I      D+
Sbjct: 196 VCPSGAIMDKRTF--TSEEREAFILPCTNTCPAGIDVSRYVRLIAEGRYQDA 245


>gi|300959104|ref|ZP_07171191.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 175-1]
 gi|300314283|gb|EFJ64067.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia
           coli MS 175-1]
          Length = 468

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CPA  +  +       G +       ++  CI CG C   CP  
Sbjct: 264 PQEEQSCIRCSACADACPAD-LLPQQLFWFSKGQQHDKATTHNIADCIECGACAWVCP-S 321

Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158
            I     F     E A   ++E      K R      R E E    +  
Sbjct: 322 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 370


>gi|255524147|ref|ZP_05391107.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           carboxidivorans P7]
 gi|296186604|ref|ZP_06855006.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           carboxidivorans P7]
 gi|255512132|gb|EET88412.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           carboxidivorans P7]
 gi|296048641|gb|EFG88073.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           carboxidivorans P7]
          Length = 441

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 22/52 (42%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           CI C  C  +CP   +  +       G     + + +++ C+ CG C   CP
Sbjct: 366 CIHCGRCVEVCPMHLVPSKLSILGERGLYEQAKEEANLLDCVECGSCVYVCP 417



 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 8/15 (53%), Positives = 9/15 (60%)

Query: 100 MIKCIYCGLCQEACP 114
              CI+CG C E CP
Sbjct: 363 ESACIHCGRCVEVCP 377


>gi|238782630|ref|ZP_04626661.1| Pyruvate-flavodoxin oxidoreductase [Yersinia bercovieri ATCC 43970]
 gi|238716557|gb|EEQ08538.1| Pyruvate-flavodoxin oxidoreductase [Yersinia bercovieri ATCC 43970]
          Length = 1177

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 32/143 (22%), Gaps = 32/143 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A        + C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSAFPPDGTWPLGTTAWEKRNIAENIPIWQPDLCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHD----------------GTRRTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVIPPDAMAGAPESLQSLDVKARDMRGQKYVLQVAPEDCTGCNLCYEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETRQ 132
                  AI   P  E     R 
Sbjct: 760 RQNPEIRAINMKPRLEHLVAERG 782


>gi|328474564|gb|EGF45369.1| electron transport complex protein RnfB [Vibrio parahaemolyticus
           10329]
          Length = 198

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 25/84 (29%), Gaps = 10/84 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
            +   S               E+ CI C  C   CP  AI   +             + +
Sbjct: 90  VEPEESAHDLDSKVPTVAFIHEDMCIGCTKCIQACPVDAIVGGTK----------AVHTV 139

Query: 99  DMIKCIYCGLCQEACPVDAIVEGP 122
              +C  C LC   CP D I   P
Sbjct: 140 IKDECTGCDLCVAPCPTDCIEMIP 163


>gi|255527529|ref|ZP_05394396.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Clostridium
           carboxidivorans P7]
 gi|296187916|ref|ZP_06856308.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium
           carboxidivorans P7]
 gi|255508767|gb|EET85140.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Clostridium
           carboxidivorans P7]
 gi|296047042|gb|EFG86484.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium
           carboxidivorans P7]
          Length = 723

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 27/88 (30%), Gaps = 16/88 (18%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIE--------------SGPRCHDGTRRTVRY 96
            A+       ++CI C  C  +CP  AI                                
Sbjct: 232 VAINVPEWQMDKCIQCNQCAFVCPHAAIRPILANEAEVAAAPAGFEAKDASGAKGLKFHM 291

Query: 97  DIDMIKCIYCGLCQEACP--VDAIVEGP 122
            +  + C+ CG C + CP    A+V  P
Sbjct: 292 AVSPLDCLGCGNCADICPAKEKALVMKP 319


>gi|291614848|ref|YP_003525005.1| electron transport complex, RnfABCDGE type, B subunit [Sideroxydans
           lithotrophicus ES-1]
 gi|291584960|gb|ADE12618.1| electron transport complex, RnfABCDGE type, B subunit [Sideroxydans
           lithotrophicus ES-1]
          Length = 184

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 26/69 (37%), Gaps = 10/69 (14%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E+ CI C LC   CP  AI   +             + I   +C  C LC   CPVD
Sbjct: 106 FIDEQTCIGCTLCLQACPVDAIVGAAKQ----------MHTIIASECTGCELCIAPCPVD 155

Query: 117 AIVEGPNFE 125
            I   P  E
Sbjct: 156 CISMLPIGE 164


>gi|121534105|ref|ZP_01665930.1| electron transport complex, RnfABCDGE type, C subunit [Thermosinus
           carboxydivorans Nor1]
 gi|121307208|gb|EAX48125.1| electron transport complex, RnfABCDGE type, C subunit [Thermosinus
           carboxydivorans Nor1]
          Length = 439

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 20/54 (37%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
             CI C  C   CP   +          G     + + D++ C+ CG C   CP
Sbjct: 363 RPCIRCGRCVEACPMGLVPSMLSVLGERGLYAVAKDEHDLLDCVECGSCVYVCP 416


>gi|114706714|ref|ZP_01439614.1| putative ferredoxin [Fulvimarina pelagi HTCC2506]
 gi|114537662|gb|EAU40786.1| putative ferredoxin [Fulvimarina pelagi HTCC2506]
          Length = 679

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 9/73 (12%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              +  C  C  C + CP  A+                +       C+ CG+C   CP +
Sbjct: 515 HVDKNACTLCMACVSACPVDALRANPDK---------PQLRFVESACVQCGICSATCPEN 565

Query: 117 AIVEGPNFEFATE 129
           AI     +  + E
Sbjct: 566 AITLEARYNVSPE 578



 Score = 38.5 bits (88), Expect = 0.29,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 18/58 (31%), Gaps = 11/58 (18%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
             C  C  +CP  AIT                  ID   C  CG C   CP  A+   
Sbjct: 283 TGCTKCIDVCPPGAITPAGDEVL-----------IDTAICGGCGNCAAHCPTGAVSYT 329


>gi|326388440|ref|ZP_08210036.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207172|gb|EGD57993.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 470

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 22/67 (32%), Gaps = 9/67 (13%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                   RCI C  C   CP              G        I+   CI  G C++AC
Sbjct: 80  IHPRIDPARCIGCGACIRACP---------ETDALGLIGRTAVLIEPWACIGHGTCRDAC 130

Query: 114 PVDAIVE 120
           P DAI  
Sbjct: 131 PTDAITL 137


>gi|317491980|ref|ZP_07950413.1| ferredoxin oxidoreductase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316920005|gb|EFV41331.1| ferredoxin oxidoreductase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 1177

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 33/147 (22%), Gaps = 32/147 (21%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P     T  +   +   A          C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSAFPPDGTWPTGTTRWEKRNIAEEIPIWEAPLCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTRRTVRY----------------DIDMIKCIYCGLCQEACPV-- 115
           P  AI  +              +                 +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVMPEAMEHAPDSLHSLDVKARDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETRQELYY 136
                  AI      +   E ++   +
Sbjct: 760 RQNPEIKAINMKSRLDHLAEEKENFDF 786


>gi|313651254|gb|EFS15652.1| uncharacterized protein yeiA [Shigella flexneri 2a str. 2457T]
 gi|332756236|gb|EGJ86587.1| hypothetical protein SF274771_2646 [Shigella flexneri 2747-71]
 gi|332765954|gb|EGJ96164.1| dihydroorotate dehydrogenase family protein [Shigella flexneri
           2930-71]
 gi|333001825|gb|EGK21391.1| hypothetical protein SFK218_3124 [Shigella flexneri K-218]
 gi|333016664|gb|EGK35993.1| hypothetical protein SFK304_2940 [Shigella flexneri K-304]
          Length = 282

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +       ++C+ C  C   C         G +  + + +T     +  K
Sbjct: 195 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 248

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 249 CVGCLLCGHVCPVGCIELG 267


>gi|297618020|ref|YP_003703179.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297145857|gb|ADI02614.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 373

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 5/62 (8%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ++C  C  C   CP  AI++        G     R  ID  KC  CG C  +C   +I  
Sbjct: 193 DKCTGCGRCAEWCPTGAISM-----VERGEGEKPRAVIDYEKCYGCGECVISCLFGSINI 247

Query: 121 GP 122
             
Sbjct: 248 SW 249



 Score = 42.0 bits (97), Expect = 0.030,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 18/61 (29%), Gaps = 4/61 (6%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM----IKCIYCGLCQEACPVDAIV 119
              K  E      AI            ++ +  D        KC  CG C E CP  AI 
Sbjct: 152 THFKCHELTGIGGAIKNVGMGLGARSGKQQMHSDFQPRLKEDKCTGCGRCAEWCPTGAIS 211

Query: 120 E 120
            
Sbjct: 212 M 212


>gi|258516627|ref|YP_003192849.1| formate dehydrogenase, alpha subunit [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257780332|gb|ACV64226.1| formate dehydrogenase, alpha subunit [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 893

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 7/88 (7%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTV 94
           +P EK +          +R       +CI C  C   C   Q  ++          + + 
Sbjct: 125 FPGEKHNYPIENENPFIVR----DMNKCILCGKCVRACAEIQGRSVIDFAYRGFDAKVSP 180

Query: 95  RYDID--MIKCIYCGLCQEACPVDAIVE 120
             D+     +C++CG C   CPV A+ E
Sbjct: 181 AMDLPLGESECVFCGSCVAVCPVGALSE 208


>gi|218782193|ref|YP_002433511.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218763577|gb|ACL06043.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 320

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 11/67 (16%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           +  ++C+ C  C   C   A+ ++ G           R  ++  +C+ CG+C + CP  A
Sbjct: 251 HDPDKCLGCGQCVEACGFLAVKMKDG-----------RPVVESDRCLGCGICVDKCPSGA 299

Query: 118 IVEGPNF 124
           IV   ++
Sbjct: 300 IVLERDY 306



 Score = 35.5 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 13/34 (38%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
            D  KC+ CG C EAC   A+            R
Sbjct: 251 HDPDKCLGCGQCVEACGFLAVKMKDGRPVVESDR 284


>gi|187251216|ref|YP_001875698.1| pyruvate:ferredoxin oxidoreductase [Elusimicrobium minutum Pei191]
 gi|186971376|gb|ACC98361.1| Pyruvate:ferredoxin oxidoreductase [Elusimicrobium minutum Pei191]
          Length = 1185

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/110 (17%), Positives = 27/110 (24%), Gaps = 23/110 (20%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV--------------- 94
             AL       E CI C +C  +CP  AI +++                           
Sbjct: 679 NIALLCPQWDPEVCIQCGICSLVCPHAAIRMKAYSADQLDNAPKTFKSADGKADLAGNKV 738

Query: 95  RYDIDMIKCIYCGLCQEACPV--------DAIVEGPNFEFATETRQELYY 136
              + +  C  CG C   CP          AI                 +
Sbjct: 739 TIQVAVEDCTGCGACVFNCPAKNKTNPERKAINMTHQLPLRDTEIDNFAF 788


>gi|218779713|ref|YP_002431031.1| hypothetical protein Dalk_1866 [Desulfatibacillum alkenivorans
           AK-01]
 gi|218761097|gb|ACL03563.1| protein of unknown function DUF362 [Desulfatibacillum alkenivorans
           AK-01]
          Length = 371

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 11/93 (11%)

Query: 28  FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH 87
           FK   T   P   G    RF  +         E++C  C LC   CP +A+T+       
Sbjct: 277 FKMPVTF-IPGVMGMILNRFLSKWINCLPQIQEDKCKQCGLCVKHCPTKAMTMAKKSYPK 335

Query: 88  DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
                          CI C  CQE CP DAIV 
Sbjct: 336 ADKNV----------CINCYCCQEMCPEDAIVL 358


>gi|302669639|ref|YP_003829599.1| pyruvate:ferredoxin oxidoreductase [Butyrivibrio proteoclasticus
           B316]
 gi|302394112|gb|ADL33017.1| pyruvate:ferredoxin oxidoreductase [Butyrivibrio proteoclasticus
           B316]
          Length = 1176

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 27/103 (26%), Gaps = 20/103 (19%)

Query: 31  KTTINYPFEKGSTSPRF-----RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
           K +   P+  G T         RG        +    CI C  C  +CP  AI   +   
Sbjct: 660 KVSDVLPYVAGDTPSGSAAFEKRGIAVNVPAWD-ATTCIGCGFCSLVCPHAAIRTIAMTD 718

Query: 86  CHD--------------GTRRTVRYDIDMIKCIYCGLCQEACP 114
                                     I  + C  CG C   CP
Sbjct: 719 DEIAKAPEGLQTKPLVGMDGYKYSVVISALDCTGCGSCANVCP 761



 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 10/24 (41%), Gaps = 3/24 (12%)

Query: 103 CIYCGLCQEACPVDAIV---EGPN 123
           CI CG C   CP  AI       +
Sbjct: 696 CIGCGFCSLVCPHAAIRTIAMTDD 719


>gi|282165441|ref|YP_003357826.1| tungsten-containing formylmethanofuran dehydrogenase subunit F
           [Methanocella paludicola SANAE]
 gi|282157755|dbj|BAI62843.1| tungsten-containing formylmethanofuran dehydrogenase subunit F
           [Methanocella paludicola SANAE]
          Length = 364

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 31/63 (49%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++C  C +C   CP +AI+         G  +T + D+D  KC YCG+C   CP DAI
Sbjct: 30  DLDKCTGCGVCIDACPEEAISEGPLGAVGRGKAKTSKIDVDAKKCSYCGVCNIMCPFDAI 89

Query: 119 VEG 121
              
Sbjct: 90  KLT 92



 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 10/93 (10%)

Query: 36  YPFE---KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
            P E   +G      RG+    +     ++C  C +C  +CP  AI +    +       
Sbjct: 44  CPEEAISEGPLGAVGRGKAKTSKIDVDAKKCSYCGVCNIMCPFDAIKLTVDGQPKLPIIE 103

Query: 93  TVRY-------DIDMIKCIYCGLCQEACPVDAI 118
              +        ID  KC  C LC+E CP DAI
Sbjct: 104 QQGFPQIAKDAKIDPEKCTRCVLCEEVCPRDAI 136



 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E++C  C +C  +C   A  I+         ++  + + D  KC YC LC  ACP +AI
Sbjct: 163 DEDKCTLCGICAELC--DAYKIDYKEPTPLTVKKIGKLNFDEKKCDYCQLCISACPEEAI 220

Query: 119 VE 120
             
Sbjct: 221 KL 222



 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 11/106 (10%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPN-GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            P E      +      L    +   E+CI C  C+ ICP  A  +E             
Sbjct: 215 CPEEAIKLERKELAAPKLSGKVDIDLEKCITCSWCQVICPRDAAKVEKLFEGE------- 267

Query: 95  RYDIDMIKC-IYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139
            Y++   +C   C  C E CP +A+   P  E A +   +L Y+K+
Sbjct: 268 -YELVTDRCPAGCSTCVEVCPANALYIPPVEE-AGQKPGKLSYNKD 311



 Score = 42.0 bits (97), Expect = 0.030,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 39/107 (36%), Gaps = 6/107 (5%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE------SGPRCHDGTRRT 93
           K     +       +      E+C  C LCE +CP  AI  E              T+  
Sbjct: 98  KLPIIEQQGFPQIAKDAKIDPEKCTRCVLCEEVCPRDAIKREVADVDQGHKASSTNTKYA 157

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140
           + + +D  KC  CG+C E C    I          +   +L +D+++
Sbjct: 158 LEFKLDEDKCTLCGICAELCDAYKIDYKEPTPLTVKKIGKLNFDEKK 204



 Score = 39.3 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 7/81 (8%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93
           +  P +       F GE+ L            C  C  +CPA A+ I   P   +  ++ 
Sbjct: 251 VICPRDAAKVEKLFEGEYELVTDRCPAG----CSTCVEVCPANALYI---PPVEEAGQKP 303

Query: 94  VRYDIDMIKCIYCGLCQEACP 114
            +   +   C+YCG C +ACP
Sbjct: 304 GKLSYNKDFCMYCGACIKACP 324



 Score = 38.2 bits (87), Expect = 0.35,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 5/88 (5%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
             K  T    +    L       ++C  C+LC + CP +AI +E         + + + D
Sbjct: 183 DYKEPTPLTVKKIGKLNFDE---KKCDYCQLCISACPEEAIKLERKELAAP--KLSGKVD 237

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           ID+ KCI C  CQ  CP DA      FE
Sbjct: 238 IDLEKCITCSWCQVICPRDAAKVEKLFE 265



 Score = 37.0 bits (84), Expect = 0.88,   Method: Composition-based stats.
 Identities = 14/26 (53%), Positives = 19/26 (73%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGP 122
            +D+ KC  CG+C +ACP +AI EGP
Sbjct: 28  TVDLDKCTGCGVCIDACPEEAISEGP 53


>gi|262198332|ref|YP_003269541.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haliangium
           ochraceum DSM 14365]
 gi|262081679|gb|ACY17648.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haliangium
           ochraceum DSM 14365]
          Length = 739

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 30/113 (26%)

Query: 61  ERCIACKLCEAICPAQ---------------------AITIESGPRCHDGTRRTVRYD-- 97
           +RCI CK+CE  C  +                       T             ++++D  
Sbjct: 225 DRCIDCKMCEKACEDRYGSKRLTLGGYQLGMIDFVYTCRTCSDQRCVSGCEYDSIKFDAS 284

Query: 98  -----IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNG 145
                I+   C+ C +C ++CP  AI      + +    +  +  K RL   G
Sbjct: 285 RGEVVINEATCVGCTMCAQSCPFHAIEMVDIEDPSHPNHRTAF--KARLDEAG 335



 Score = 38.9 bits (89), Expect = 0.21,   Method: Composition-based stats.
 Identities = 30/123 (24%), Positives = 36/123 (29%), Gaps = 40/123 (32%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHD---------------------GTRRTVRYD 97
            E  C+ C +C   CP  AI +                             GT R  R  
Sbjct: 291 NEATCVGCTMCAQSCPFHAIEMVDIEDPSHPNHRTAFKARLDEAGSLKFGPGTGRVARPR 350

Query: 98  IDMIKCIYC-----GLCQEACPVDA-IVEGPNFEF------------ATETRQELYYDKE 139
               KC +C       C  ACP  A I   P   F            A   R +L  DK+
Sbjct: 351 RIANKCDHCVQFFDQACVSACPTSALIEISPEQLFRERSASARTLAEAGYDR-DLRPDKK 409

Query: 140 RLL 142
            LL
Sbjct: 410 ELL 412


>gi|126178175|ref|YP_001046140.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanoculleus marisnigri JR1]
 gi|125860969|gb|ABN56158.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methanoculleus marisnigri JR1]
          Length = 367

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 15/75 (20%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               ERC  C  C  +CP  A+T+  G              ++   C+ CG C  ACP  
Sbjct: 188 YVEIERCGGCGKCTTVCPQAAMTLADGRAV-----------LNPEHCVGCGDCMRACPEG 236

Query: 117 AIVEGPNFEFATETR 131
           AI     F++ TE R
Sbjct: 237 AI----EFDWTTEIR 247


>gi|150018464|ref|YP_001310718.1| nitroreductase [Clostridium beijerinckii NCIMB 8052]
 gi|149904929|gb|ABR35762.1| nitroreductase [Clostridium beijerinckii NCIMB 8052]
          Length = 268

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 10/58 (17%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           E+CI C +C   CP   + +E+               ++   CI CG C   CP +AI
Sbjct: 9   EKCIKCGMCVVECPTGVLKLEADGPKE----------VNPNACIECGHCVAVCPKEAI 56


>gi|317970221|ref|ZP_07971611.1| bidirectional hydrogenase complex protein HoxU [Synechococcus sp.
           CB0205]
          Length = 238

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 22/66 (33%), Gaps = 4/66 (6%)

Query: 59  GEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDIDMI--KCIYCGLCQEACP 114
              RCI C  C  +C     A   + G R       +   +       C  CG C E CP
Sbjct: 144 DHNRCILCTRCVRVCDEVEGAHVWDVGWRGEQCQIISGLAEAWGEVQACTDCGKCVEVCP 203

Query: 115 VDAIVE 120
             A+  
Sbjct: 204 TGALFH 209


>gi|262165248|ref|ZP_06032985.1| electron transport complex protein RnfB [Vibrio mimicus VM223]
 gi|262024964|gb|EEY43632.1| electron transport complex protein RnfB [Vibrio mimicus VM223]
          Length = 195

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 24/79 (30%), Gaps = 10/79 (12%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103
           S               E+ CI C  C   CP  AI   +             + +   +C
Sbjct: 95  SAHDLDNKVKMVAFIHEDMCIGCTKCIQACPVDAIVGGNK----------AVHTVIKNEC 144

Query: 104 IYCGLCQEACPVDAIVEGP 122
             C LC   CP D I   P
Sbjct: 145 TGCDLCVAPCPTDCIEMIP 163


>gi|253698761|ref|YP_003019950.1| molybdopterin oxidoreductase Fe4S4 region [Geobacter sp. M21]
 gi|251773611|gb|ACT16192.1| molybdopterin oxidoreductase Fe4S4 region [Geobacter sp. M21]
          Length = 966

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 28/103 (27%), Gaps = 18/103 (17%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P E    +   +            +RCI C  C   C A+      G     G R     
Sbjct: 724 PEEDMYPAHEHKKHR--WGMAIDLQRCIGCGACAVACYAENNIPVIGKEQVGGGREMAWL 781

Query: 97  DIDMIK--------------CIYCGL--CQEACPVDAIVEGPN 123
            +   +              C +C    C+  CPV A V    
Sbjct: 782 RVPPYRMPGDRLRYAWLPLHCQHCDAAPCEPVCPVFAAVHSEE 824



 Score = 36.2 bits (82), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 1/37 (2%)

Query: 78  ITIESGPRCHDGTRRTVR-YDIDMIKCIYCGLCQEAC 113
              E         ++      ID+ +CI CG C  AC
Sbjct: 722 YRPEEDMYPAHEHKKHRWGMAIDLQRCIGCGACAVAC 758


>gi|237733621|ref|ZP_04564102.1| pyruvate/ketoisovalerate oxidoreductase [Mollicutes bacterium D7]
 gi|229383219|gb|EEO33310.1| pyruvate/ketoisovalerate oxidoreductase [Coprobacillus sp. D7]
          Length = 371

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 5/96 (5%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           +E+CI C  C   CP      E G   + G +  V   +D   C  C  C E CP  A+V
Sbjct: 255 QEKCIQCAQCYITCPDMVFQFEPG--IYKGRKMMVNKGLDYHHCKGCLRCVEICPTQALV 312

Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRN 155
            G   E +    +    +K+ ++ + D +E     +
Sbjct: 313 SGVEREHS--NLKWFIRNKDLIVEHMD-YEDVGANS 345


>gi|237653892|ref|YP_002890206.1| electron transport complex protein RnfC [Thauera sp. MZ1T]
 gi|237625139|gb|ACR01829.1| electron transport complex, RnfABCDGE type, C subunit [Thauera sp.
           MZ1T]
          Length = 573

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 24/76 (31%), Gaps = 2/76 (2%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L      E+ CI C  C   CP +    E               +  +  CI CG C   
Sbjct: 359 LFPPAPPEQPCIRCTECAKACPVELQPFELY-WFSRSKNFGKAQEYHLFDCIECGCCAYV 417

Query: 113 CPVDAIVEGPNFEFAT 128
           CP   I     + F+ 
Sbjct: 418 CPSH-IPLVDYYRFSK 432


>gi|222480730|ref|YP_002566967.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Halorubrum
           lacusprofundi ATCC 49239]
 gi|222453632|gb|ACM57897.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Halorubrum
           lacusprofundi ATCC 49239]
          Length = 109

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 29/82 (35%), Gaps = 2/82 (2%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100
           G   P  +            + C+A   C   CP         P   +  R+    D   
Sbjct: 24  GPVEPPEKQGIRGTHVAVDFDICLADGACLEDCPVDVFEWVDTPGHPESERKASPVD--E 81

Query: 101 IKCIYCGLCQEACPVDAIVEGP 122
            +CI C LC + CPVDAI   P
Sbjct: 82  DQCIDCMLCVDVCPVDAIDVDP 103


>gi|15669380|ref|NP_248188.1| polyferredoxin MvhB [Methanocaldococcus jannaschii DSM 2661]
 gi|41018414|sp|Q58593|VHUB_METJA RecName: Full=Polyferredoxin protein vhuB
 gi|1591821|gb|AAB99195.1| polyferredoxin (mvhB) [Methanocaldococcus jannaschii DSM 2661]
          Length = 394

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            + +CI C +C   CP  AI   +G       +   +++++  KCIYC  C E CP D I
Sbjct: 167 DKSKCIYCSICAQTCPWNAIF-VAGKIPKKRRKEVKKFEVNAEKCIYCLKCVEVCPGDMI 225

Query: 119 VEGPN 123
                
Sbjct: 226 KVDEE 230



 Score = 41.2 bits (95), Expect = 0.046,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 3/73 (4%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
             +  + C  C  C  +CP  A+            ++  R +    KC  CG C EACP+
Sbjct: 29  DIDSFKVCNLCMECVKVCPTGALV---EEEIEVNGKKLKRVNYLAHKCEKCGQCAEACPI 85

Query: 116 DAIVEGPNFEFAT 128
                  +F ++ 
Sbjct: 86  GIKKVDDDFPYSK 98



 Score = 39.3 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 3/54 (5%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
             CI C  C   CP  A+ +    +     +   R +     C  CG C E CP
Sbjct: 304 RMCIVCGACTVACPTGALKL---GKIEHNGKEYNRIEFSPYLCDKCGKCVEVCP 354



 Score = 38.5 bits (88), Expect = 0.32,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 11/57 (19%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           C+ C +C   CP  AIT+E+               ID  KCIYC +C + CP +AI 
Sbjct: 142 CVGCGICVPECPVNAITLENNKAV-----------IDKSKCIYCSICAQTCPWNAIF 187



 Score = 37.4 bits (85), Expect = 0.62,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI-DMIKCIYCGLCQEACP 114
           +P  +  C+ C+ C  +CP + I++           +  +  I     C+ CG+C   CP
Sbjct: 94  FPYSKGHCVLCQKCIDVCPIEIISLPGVIDKPKKEIKPPKEPIAVTDACVGCGICVPECP 153

Query: 115 VDAIVEGPN 123
           V+AI    N
Sbjct: 154 VNAITLENN 162


>gi|323172832|gb|EFZ58464.1| pyruvate:ferredoxin oxidoreductase [Escherichia coli LT-68]
          Length = 1174

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGSWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|301304965|ref|ZP_07211068.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           MS 124-1]
 gi|300839795|gb|EFK67555.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           MS 124-1]
 gi|315253595|gb|EFU33563.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           MS 85-1]
          Length = 1174

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGSWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|300901793|ref|ZP_07119828.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           MS 84-1]
 gi|300406005|gb|EFJ89543.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           MS 84-1]
          Length = 1174

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGSWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|289432857|ref|YP_003462730.1| glutamate synthase (NADPH) [Dehalococcoides sp. GT]
 gi|288946577|gb|ADC74274.1| Glutamate synthase (NADPH) [Dehalococcoides sp. GT]
          Length = 500

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 12/89 (13%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           +RCI CK+C   C       ++            +  +    C+ C  C   CP  A+V 
Sbjct: 16  DRCIKCKVCITQCSFDTHYYDADDD---------QIKVRNQNCVGCHRCVTFCPTGALVV 66

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWE 149
             N     E RQ   +  E + +   + E
Sbjct: 67  RNN---PLEYRQNANWTPEMIEDIFKQAE 92


>gi|260431153|ref|ZP_05785124.1| formate dehydrogenase, alpha subunit [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260414981|gb|EEX08240.1| formate dehydrogenase, alpha subunit [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 927

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 28/85 (32%), Gaps = 10/85 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD- 97
           EK            +         CI C LC   C  +    +       G    V +D 
Sbjct: 135 EKIPLLDDSHVAMRVNLD-----ACINCNLCVRACR-EVQVNDVIGMAGRGHTAQVVFDQ 188

Query: 98  ---IDMIKCIYCGLCQEACPVDAIV 119
              +    C+ CG C +ACP  A++
Sbjct: 189 NDPMGESTCVACGECVQACPTGALM 213


>gi|237723324|ref|ZP_04553805.1| pyruvate-flavodoxin oxidoreductase [Bacteroides sp. 2_2_4]
 gi|293373150|ref|ZP_06619512.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides ovatus
           SD CMC 3f]
 gi|229447846|gb|EEO53637.1| pyruvate-flavodoxin oxidoreductase [Bacteroides sp. 2_2_4]
 gi|292631798|gb|EFF50414.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides ovatus
           SD CMC 3f]
          Length = 1182

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 28/81 (34%), Gaps = 15/81 (18%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG  A     N  E CI C  C  +CP                A   +           T
Sbjct: 676 RGVAAFVPEWN-PENCIQCNKCAYVCPHASIRPFVLDAEEQKGAKFEQLKAVGKAFDGMT 734

Query: 94  VRYDIDMIKCIYCGLCQEACP 114
            R  +D++ C+ CG C + CP
Sbjct: 735 FRIQVDVLDCLGCGNCADICP 755


>gi|218261658|ref|ZP_03476393.1| hypothetical protein PRABACTJOHN_02061 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223886|gb|EEC96536.1| hypothetical protein PRABACTJOHN_02061 [Parabacteroides johnsonii
           DSM 18315]
          Length = 1182

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 27/82 (32%), Gaps = 16/82 (19%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG  A     N    CI C  C  +CP                A       +     +  
Sbjct: 676 RGVAAFVPVWNE-ANCIQCNQCAYVCPHASIRPFVLNDEEQKGANFPMLDVKAPATMKGM 734

Query: 94  V-RYDIDMIKCIYCGLCQEACP 114
             R  +D++ C+ CG C + CP
Sbjct: 735 KFRMQVDVLDCLGCGNCADICP 756


>gi|160894561|ref|ZP_02075337.1| hypothetical protein CLOL250_02113 [Clostridium sp. L2-50]
 gi|156863872|gb|EDO57303.1| hypothetical protein CLOL250_02113 [Clostridium sp. L2-50]
          Length = 483

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 22/70 (31%), Gaps = 8/70 (11%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY--------DIDMIKCIYCGL 108
                +C  C  C   CP  AI     P         +           I+  KCI CG 
Sbjct: 125 YIDPSKCKECGQCAKACPYNAIADLVRPCMKSCPVDAISVADNGTGIAVINQDKCIQCGS 184

Query: 109 CQEACPVDAI 118
           C   CP  AI
Sbjct: 185 CVHKCPFGAI 194



 Score = 37.8 bits (86), Expect = 0.56,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 61  ERCIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C  C    C+A C   AI++                 ID  KC  CG C +ACP +AI
Sbjct: 98  DNCQKCMGKACQAACRFGAISMGRDKSY-----------IDPSKCKECGQCAKACPYNAI 146


>gi|160886479|ref|ZP_02067482.1| hypothetical protein BACOVA_04490 [Bacteroides ovatus ATCC 8483]
 gi|298480786|ref|ZP_06998982.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides sp.
           D22]
 gi|156108364|gb|EDO10109.1| hypothetical protein BACOVA_04490 [Bacteroides ovatus ATCC 8483]
 gi|295085033|emb|CBK66556.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric
           [Bacteroides xylanisolvens XB1A]
 gi|298273220|gb|EFI14785.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides sp.
           D22]
          Length = 1182

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 28/81 (34%), Gaps = 15/81 (18%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG  A     N  E CI C  C  +CP                A   +           T
Sbjct: 676 RGVAAFVPEWN-PENCIQCNKCAYVCPHASIRPFVLDAEEQKGAKFEQLKAVGKAFDGMT 734

Query: 94  VRYDIDMIKCIYCGLCQEACP 114
            R  +D++ C+ CG C + CP
Sbjct: 735 FRIQVDVLDCLGCGNCADICP 755


>gi|150377591|ref|YP_001314186.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Sinorhizobium medicae WSM419]
 gi|150032138|gb|ABR64253.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sinorhizobium
           medicae WSM419]
          Length = 679

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 23/72 (31%), Gaps = 9/72 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + C  C  C + CP  A++                       C+ CGLC   CP  AI
Sbjct: 520 NVDACTLCLSCVSACPTGALSDSEERPALY---------FAESACVQCGLCAATCPEKAI 570

Query: 119 VEGPNFEFATET 130
              P  +F    
Sbjct: 571 ALVPQLDFQAWN 582


>gi|325294718|ref|YP_004281232.1| Glutamate synthase (NADPH) [Desulfurobacterium thermolithotrophum
           DSM 11699]
 gi|325065166|gb|ADY73173.1| Glutamate synthase (NADPH) [Desulfurobacterium thermolithotrophum
           DSM 11699]
          Length = 505

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 27/98 (27%), Gaps = 25/98 (25%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
             F+      YPF              LR       +C+ CK C   C   A   +    
Sbjct: 1   MLFRKPQVAFYPF------------MVLRDDY----KCVRCKSCVDQCSFDATYYDEDLE 44

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                            C+ C  C+  CP DAI    N
Sbjct: 45  MIVNRN---------ENCVNCKRCEAFCPTDAIKVVKN 73


>gi|320160378|ref|YP_004173602.1| putative oxidoreductase [Anaerolinea thermophila UNI-1]
 gi|319994231|dbj|BAJ63002.1| putative oxidoreductase [Anaerolinea thermophila UNI-1]
          Length = 680

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 21/86 (24%), Gaps = 8/86 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA---QAITIESGPRCHDGTRR 92
            P  K            +        RCI C+ C   C                +     
Sbjct: 160 QPAWKPYPVDASHPNLVI-----DHNRCILCRRCVRACGELVGNYTLGIEERGANSMLIA 214

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAI 118
                     CI CG C + CP  AI
Sbjct: 215 DTGVPFGESTCISCGTCSQVCPTGAI 240



 Score = 34.7 bits (78), Expect = 4.7,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 18/67 (26%), Gaps = 9/67 (13%)

Query: 56  YPNGEERCIAC----KLCE---AICPAQAITIESGPRCHDGTRRTVRYD--IDMIKCIYC 106
           + +    C  C      CE             +  P            +  ID  +CI C
Sbjct: 126 FSDRNHFCPYCQVSGGDCELQNTALDMGMTHWDYQPAWKPYPVDASHPNLVIDHNRCILC 185

Query: 107 GLCQEAC 113
             C  AC
Sbjct: 186 RRCVRAC 192


>gi|294636276|ref|ZP_06714681.1| pyruvate-ferredoxin oxidoreductase [Edwardsiella tarda ATCC 23685]
 gi|291090440|gb|EFE23001.1| pyruvate-ferredoxin oxidoreductase [Edwardsiella tarda ATCC 23685]
          Length = 639

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 29/144 (20%), Gaps = 32/144 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A          C  C  C A C
Sbjct: 108 MLAGLGDTL------PVSAFPPDGTWPVGTTRWEKRNIADAIPIWQPTLCTQCNHCVAAC 161

Query: 74  PA--------------QAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPV-- 115
           P                A    +         R  RY   +    C  C LC   CP   
Sbjct: 162 PHAAIRAKVVDPAALTDAPDTLASLEVRSRDMRGQRYVLQVAPEDCTGCNLCVTVCPAAD 221

Query: 116 ------DAIVEGPNFEFATETRQE 133
                  AI   P        R  
Sbjct: 222 RQDPSIKAINMQPRLAHLATERAN 245


>gi|157145676|ref|YP_001452995.1| hypothetical protein CKO_01425 [Citrobacter koseri ATCC BAA-895]
 gi|157082881|gb|ABV12559.1| hypothetical protein CKO_01425 [Citrobacter koseri ATCC BAA-895]
          Length = 1174

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 29/167 (17%), Positives = 41/167 (24%), Gaps = 43/167 (25%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           P  A                   +++   R   G +      +    C  C LC E CP 
Sbjct: 700 PHSAIRAKVVSPEAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757

Query: 116 --------DAIVEGPNFEFATETRQELYY-------DKERLLNNGDR 147
                    AI      E   E +    +       DK +L     R
Sbjct: 758 KDRQNPEIKAINMMSRLEHVEEEKVNYDFFLNLPEIDKSKLERIDIR 804


>gi|126729406|ref|ZP_01745220.1| benzoyl-CoA oxygenase, A subunit [Sagittula stellata E-37]
 gi|126710396|gb|EBA09448.1| benzoyl-CoA oxygenase, A subunit [Sagittula stellata E-37]
          Length = 395

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 11/73 (15%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
                L+++    E CI C  CE  CP +AIT                  +D  KC +C 
Sbjct: 1   MMNKPLKQHLIDPEICIRCYTCEMTCPIEAITHNDDNVV-----------VDPDKCNFCM 49

Query: 108 LCQEACPVDAIVE 120
            C   CP  +I E
Sbjct: 50  DCIPVCPTGSIDE 62


>gi|148554393|ref|YP_001261975.1| formate dehydrogenase subunit alpha [Sphingomonas wittichii RW1]
 gi|148499583|gb|ABQ67837.1| formate dehydrogenase, alpha subunit [Sphingomonas wittichii RW1]
          Length = 947

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 3/80 (3%)

Query: 55  RYPNGEERCIACKLCEAICPAQAIT---IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T      G         +   D    +C+ CG C +
Sbjct: 160 YFTFDSTKCIVCSRCVRACDEVQGTLALTVDGRGFQSHIAASQDQDFLSSECVSCGACVQ 219

Query: 112 ACPVDAIVEGPNFEFATETR 131
           ACP  A++E    E  T  R
Sbjct: 220 ACPTSALIEKSVIEKGTPDR 239


>gi|160879965|ref|YP_001558933.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium
           phytofermentans ISDg]
 gi|160428631|gb|ABX42194.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium
           phytofermentans ISDg]
          Length = 287

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 11/58 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           E+CI C  CE +C + AITI+ G             ++D  KC YCG C ++CP DA 
Sbjct: 164 EKCILCGACEKVCRSHAITIKDGKV-----------NVDYNKCNYCGRCAKSCPTDAW 210


>gi|291532617|emb|CBL05730.1| Uncharacterized Fe-S center protein [Megamonas hypermegale ART12/1]
          Length = 375

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 23/64 (35%), Gaps = 11/64 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++C+ C  C  IC   A  I                 ID  KC+ CG C  AC  DAI
Sbjct: 194 DTDKCVGCGACSRICAHGAPIITDRKCY-----------IDPDKCLGCGRCIGACHFDAI 242

Query: 119 VEGP 122
               
Sbjct: 243 KPTN 246


>gi|283785355|ref|YP_003365220.1| pyruvate-flavodoxin oxidoreductase [Citrobacter rodentium ICC168]
 gi|282948809|emb|CBG88405.1| probable pyruvate-flavodoxin oxidoreductase [Citrobacter rodentium
           ICC168]
          Length = 1174

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 36/144 (25%), Gaps = 36/144 (25%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPLGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           P  A                   +++   R   G +  +   +    C  C LC E CP 
Sbjct: 700 PHSAIRAKVVSPQDMENAPATLHSLDVKSRDMRGQKYML--QVAPEDCTGCNLCVEVCPA 757

Query: 116 --------DAIVEGPNFEFATETR 131
                    AI      E   E +
Sbjct: 758 KDRQNPEIKAINMMSRLEHVEEEK 781


>gi|258623674|ref|ZP_05718660.1| electron transport complex protein RnfB [Vibrio mimicus VM573]
 gi|262171979|ref|ZP_06039657.1| electron transport complex protein RnfB [Vibrio mimicus MB-451]
 gi|258584040|gb|EEW08803.1| electron transport complex protein RnfB [Vibrio mimicus VM573]
 gi|261893055|gb|EEY39041.1| electron transport complex protein RnfB [Vibrio mimicus MB-451]
          Length = 195

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 24/79 (30%), Gaps = 10/79 (12%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103
           S               E+ CI C  C   CP  AI   +             + +   +C
Sbjct: 95  SAHDLDNKVKMVAFIHEDMCIGCTKCIQACPVDAIVGGNK----------AVHTVIKNEC 144

Query: 104 IYCGLCQEACPVDAIVEGP 122
             C LC   CP D I   P
Sbjct: 145 TGCDLCVAPCPTDCIEMIP 163


>gi|258627118|ref|ZP_05721914.1| electron transport complex protein RnfB [Vibrio mimicus VM603]
 gi|258580636|gb|EEW05589.1| electron transport complex protein RnfB [Vibrio mimicus VM603]
          Length = 195

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 24/79 (30%), Gaps = 10/79 (12%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103
           S               E+ CI C  C   CP  AI   +             + +   +C
Sbjct: 95  SAHDLDNKVKMVAFIHEDMCIGCTKCIQACPVDAIVGGNK----------AVHTVIKNEC 144

Query: 104 IYCGLCQEACPVDAIVEGP 122
             C LC   CP D I   P
Sbjct: 145 TGCDLCVAPCPTDCIEMIP 163


>gi|212704088|ref|ZP_03312216.1| hypothetical protein DESPIG_02143 [Desulfovibrio piger ATCC 29098]
 gi|212672448|gb|EEB32931.1| hypothetical protein DESPIG_02143 [Desulfovibrio piger ATCC 29098]
          Length = 298

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 28/79 (35%), Gaps = 12/79 (15%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C++C  C  +CP  A+      +             D  KC +CG C E CP  A V   
Sbjct: 55  CVSCGACMQVCPNGAVVPLENGKMGR----------DTEKCTHCGACTEVCPNKARVMSG 104

Query: 123 NFEFATETRQELYYDKERL 141
                 E  +     K+ L
Sbjct: 105 RIMTVEEVME--VVRKDWL 121


>gi|158522074|ref|YP_001529944.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfococcus oleovorans Hxd3]
 gi|158510900|gb|ABW67867.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus
           oleovorans Hxd3]
          Length = 385

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           C  C+  C    +         + T       ID   C  CG+C E CPVDAIV G  
Sbjct: 287 CNCCKDCCDTFTLWRNGATPMINSTNYLSV--IDEDTCTGCGICVERCPVDAIVLGSE 342



 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 10/63 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ C  C +C   CP  AI + S        +           CI CG+C   CP  AI
Sbjct: 318 DEDTCTGCGICVERCPVDAIVLGSEGTAVREEKY----------CIGCGICARFCPEGAI 367

Query: 119 VEG 121
              
Sbjct: 368 SLQ 370


>gi|158320076|ref|YP_001512583.1| indolepyruvate ferredoxin oxidoreductase [Alkaliphilus oremlandii
           OhILAs]
 gi|158140275|gb|ABW18587.1| Indolepyruvate ferredoxin oxidoreductase [Alkaliphilus oremlandii
           OhILAs]
          Length = 605

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 6/71 (8%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R +     +    E CI+C+ C          ++          ++    ID   C+ C 
Sbjct: 527 RYKLENPHFYVDPEICISCRSC---IKTNCPPLKMKKYEGIEKLKSS---IDPDMCVGCS 580

Query: 108 LCQEACPVDAI 118
           +C + CPV+AI
Sbjct: 581 ICAQVCPVNAI 591


>gi|15678133|ref|NP_275248.1| glutamate synthase (NADPH), alpha subunit [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|2621136|gb|AAB84604.1| glutamate synthase (NADPH), alpha subunit [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 622

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 11/53 (20%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           C+ C  CE +CP  AI I                +ID  KCI CG C  ACPV
Sbjct: 170 CVFCGTCEIVCPTDAIKIVED-----------HAEIDKTKCIMCGSCLAACPV 211



 Score = 37.0 bits (84), Expect = 0.80,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 25/80 (31%), Gaps = 15/80 (18%)

Query: 48  RGEHALRRYPNGEER--CIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103
           R    L +   G     C  C    C   C   AI  E+G              ID   C
Sbjct: 31  RSAIFLNKMDTGYHAIVCQQCVDPSCARGCFRDAIRRENGAV-----------KIDQESC 79

Query: 104 IYCGLCQEACPVDAIVEGPN 123
           + C LC   CP+ AI     
Sbjct: 80  VGCKLCMLMCPIGAITYTDE 99



 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 103 CIYCGLCQEACPVDAIVEGPNF 124
           C++CG C+  CP DAI    + 
Sbjct: 170 CVFCGTCEIVCPTDAIKIVEDH 191


>gi|76666833|emb|CAJ31210.1| Iron-sulfur-binding protein, glutamate synthase subunit (DsrL/GltD)
           [uncultured sulfate-reducing bacterium]
          Length = 562

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 19/61 (31%), Gaps = 2/61 (3%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           +RC++C  C         +            R   Y I +  C  C  C E CP   I  
Sbjct: 504 QRCMSCGKCFDCST--CWSFCQDNAIVKPLTRGEPYKIKLDFCTGCKKCSEVCPCGYIEM 561

Query: 121 G 121
            
Sbjct: 562 H 562


>gi|41018387|sp|Q00388|VHUB_METVO RecName: Full=Polyferredoxin protein vhuB
 gi|1747410|emb|CAA43512.1| polyferredoxin [Methanococcus voltae PS]
          Length = 398

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 30/83 (36%), Gaps = 1/83 (1%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L  Y +    C  C +   +CP  AI + +       +R     D +   CI CG C   
Sbjct: 261 LVWYEDKCNYCGPCAIKCPLCPTNAINMINQKGLALPSRTKTDKDPEFRMCIRCGACVMK 320

Query: 113 CPVDAIVEGPN-FEFATETRQEL 134
           CP  A+  G    E     R E 
Sbjct: 321 CPTGALKMGKITHEGKEYNRIEF 343



 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 11/77 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E+CI C +C   CP  AI   +G +     +    + +    CI C  C E CP D I
Sbjct: 157 DTEKCIYCSVCAQTCPWNAIY-VAGKKPSKRQKEIKSFTVTEE-CIGCEKCVEVCPGDMI 214

Query: 119 VEGPNFEFATETRQELY 135
                    T  R++L 
Sbjct: 215 ---------TYNREDLI 222



 Score = 40.1 bits (92), Expect = 0.10,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 3/65 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI C  C   CP  A+ +    +     +   R +     C  CG C + CP D +
Sbjct: 307 EFRMCIRCGACVMKCPTGALKM---GKITHEGKEYNRIEFSPALCNECGECVDVCPQDTL 363

Query: 119 VEGPN 123
               +
Sbjct: 364 KLTGD 368



 Score = 38.9 bits (89), Expect = 0.21,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 11/80 (13%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
            G      R     +      E C+ C  C  +CP  AI+IE                ID
Sbjct: 109 PGKIDKPEREVTIPQEPIKVTEACVGCSECVPVCPVDAISIEDELAV-----------ID 157

Query: 100 MIKCIYCGLCQEACPVDAIV 119
             KCIYC +C + CP +AI 
Sbjct: 158 TEKCIYCSVCAQTCPWNAIY 177



 Score = 38.2 bits (87), Expect = 0.35,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 11/69 (15%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            + C  C  C + CP  A+   +G               +  KCI CG C  ACP     
Sbjct: 31  FKTCTLCFSCASACPTGALVENNGKLI-----------YNSSKCIKCGNCATACPTGIKK 79

Query: 120 EGPNFEFAT 128
               F ++ 
Sbjct: 80  VDDRFPYSK 88



 Score = 37.8 bits (86), Expect = 0.53,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 3/82 (3%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID-MIKCIYCGLCQEACP 114
           +P  +  C+ C+ C   CP   I+I       +      +  I     C+ C  C   CP
Sbjct: 84  FPYSKGHCVLCEKCVDACPIDIISIPGKIDKPEREVTIPQEPIKVTEACVGCSECVPVCP 143

Query: 115 VDAIVEGPNFEFATETRQELYY 136
           VDAI      E A    ++  Y
Sbjct: 144 VDAISIED--ELAVIDTEKCIY 163



 Score = 33.5 bits (75), Expect = 8.7,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 12/61 (19%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
               +CI C  C   CP                +   R+      C+ C  C +ACP+D 
Sbjct: 58  YNSSKCIKCGNCATACPTGIK------------KVDDRFPYSKGHCVLCEKCVDACPIDI 105

Query: 118 I 118
           I
Sbjct: 106 I 106


>gi|51596492|ref|YP_070683.1| electron transport complex protein RnfB [Yersinia
           pseudotuberculosis IP 32953]
 gi|145598187|ref|YP_001162263.1| electron transport complex protein RnfB [Yersinia pestis Pestoides
           F]
 gi|153949540|ref|YP_001400870.1| electron transport complex protein RnfB [Yersinia
           pseudotuberculosis IP 31758]
 gi|170024242|ref|YP_001720747.1| electron transport complex protein RnfB [Yersinia
           pseudotuberculosis YPIII]
 gi|186895542|ref|YP_001872654.1| electron transport complex protein RnfB [Yersinia
           pseudotuberculosis PB1/+]
 gi|51589774|emb|CAH21404.1| putative iron-sulfur protein [Yersinia pseudotuberculosis IP 32953]
 gi|145209883|gb|ABP39290.1| iron-sulfur protein [Yersinia pestis Pestoides F]
 gi|152961035|gb|ABS48496.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pseudotuberculosis IP 31758]
 gi|169750776|gb|ACA68294.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pseudotuberculosis YPIII]
 gi|186698568|gb|ACC89197.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pseudotuberculosis PB1/+]
          Length = 207

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 24/78 (30%), Gaps = 10/78 (12%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C  C   CP  AI   +             + +    C  C LC   CP D
Sbjct: 111 FIDEANCIGCTKCIQACPVDAIIGAT----------RAMHTVLSDLCTGCDLCVAPCPTD 160

Query: 117 AIVEGPNFEFATETRQEL 134
            I   P        + +L
Sbjct: 161 CIEMIPVATTTANWKWDL 178


>gi|326573425|gb|EGE23393.1| RnfABCDGE type electron transport complex subunit B [Moraxella
           catarrhalis 101P30B1]
          Length = 275

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 28/100 (28%), Gaps = 12/100 (12%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            +       T    P +        R +    R    E  CI C  C   CP  AI   +
Sbjct: 80  TIANILNKPTKPATPSQWQIDPQTNRPKEV--RAIIQEADCIGCTKCIPACPVDAIVGTA 137

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                          I    C  C LC   CPVD I   P
Sbjct: 138 KHMHS----------IITDLCTGCELCLAPCPVDCIDVIP 167


>gi|310829205|ref|YP_003961562.1| 4Fe-4S ferredoxin [Eubacterium limosum KIST612]
 gi|308740939|gb|ADO38599.1| 4Fe-4S ferredoxin [Eubacterium limosum KIST612]
          Length = 133

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 10/61 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++RC+ C  C A C   A+ ++                    KC+ C LC +ACPV AI
Sbjct: 80  DKDRCVDCGACTAACVVGALDMDEN----------WLLTYHPEKCLECALCIKACPVRAI 129

Query: 119 V 119
            
Sbjct: 130 H 130


>gi|304397719|ref|ZP_07379596.1| electron transport complex, RnfABCDGE type, B subunit [Pantoea sp.
           aB]
 gi|304354891|gb|EFM19261.1| electron transport complex, RnfABCDGE type, B subunit [Pantoea sp.
           aB]
          Length = 192

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 22/74 (29%), Gaps = 10/74 (13%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
            E         E  CI C  C   CP  AI   +             + +    C  C L
Sbjct: 103 KEPVRTVAFIDEANCIGCTKCIQACPVDAIVGAT----------RAMHTVLSDVCTGCDL 152

Query: 109 CQEACPVDAIVEGP 122
           C   CP D I   P
Sbjct: 153 CVAPCPTDCIEMRP 166


>gi|302340162|ref|YP_003805368.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Spirochaeta smaragdinae DSM 11293]
 gi|301637347|gb|ADK82774.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Spirochaeta smaragdinae DSM 11293]
          Length = 595

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 14/94 (14%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
           ++F+ +   +   ++            L  Y    ++CI C +C   CP  AI  E    
Sbjct: 514 HYFEDEYKAHIKDKRCPAGKCKP----LISYHILADKCIGCGVCARKCPVHAINGE---- 565

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
                 R   ++ID   CI CG C +AC  DA+ 
Sbjct: 566 ------RRQLHEIDHDICIKCGECYKACKFDAVY 593


>gi|326202424|ref|ZP_08192293.1| hydrogenase, Fe-only [Clostridium papyrosolvens DSM 2782]
 gi|325987542|gb|EGD48369.1| hydrogenase, Fe-only [Clostridium papyrosolvens DSM 2782]
          Length = 592

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 7/85 (8%)

Query: 59  GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDM--IKCIYCGLCQEACPV 115
              +CI C+ CE  C   Q   I SG      +      +I M    C YCG C + CP 
Sbjct: 161 DANKCIYCRRCETACNKVQTCGILSGIGRGFNSFVGPFANIPMVESSCTYCGQCVQVCPT 220

Query: 116 DAIVEGPNFEFATETRQELYYDKER 140
            A+ E     + T+   E   D ++
Sbjct: 221 AALTEV----YHTDKVWEAISDPDK 241


>gi|255526810|ref|ZP_05393709.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7]
 gi|296186424|ref|ZP_06854827.1| protein HymB [Clostridium carboxidivorans P7]
 gi|255509489|gb|EET85830.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7]
 gi|296048871|gb|EFG88302.1| protein HymB [Clostridium carboxidivorans P7]
          Length = 631

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 10/62 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               ++CI C  C   CP   I            +    + ID  KCI CG C   CPVD
Sbjct: 577 YEITDKCIGCTKCLRNCPVNCING----------KVKQVHTIDQSKCIKCGACCSGCPVD 626

Query: 117 AI 118
           AI
Sbjct: 627 AI 628



 Score = 34.3 bits (77), Expect = 5.2,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 14/40 (35%)

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
                 C  G  + +       KCI C  C   CPV+ I 
Sbjct: 560 HVKEKSCPAGVCKNLLKYEITDKCIGCTKCLRNCPVNCIN 599


>gi|118575489|ref|YP_875232.1| hypothetical protein CENSYa_0289 [Cenarchaeum symbiosum A]
 gi|118194010|gb|ABK76928.1| hypothetical protein CENSYa_0289 [Cenarchaeum symbiosum A]
          Length = 99

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 1/70 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           GE+ CI C LC  IC      +        G +R   +     +CI  G C   CP  AI
Sbjct: 10  GEQMCIGCALCVEICTTLGPDVLRVKPVE-GWKRGKAFVFYPERCIADGACIGVCPTKAI 68

Query: 119 VEGPNFEFAT 128
                 +F  
Sbjct: 69  FWMRPMDFTV 78


>gi|73920212|sp|P00219|FER_SULAC RecName: Full=Zinc-containing ferredoxin
          Length = 103

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + CIA   C   CP         P      ++     ++   CI+C  C   CPV AI
Sbjct: 41  DFDLCIADGSCITACPVNVFQWYETPGHPASEKKADP--VNEQACIFCMACVNVCPVAAI 98

Query: 119 VEGP 122
              P
Sbjct: 99  DVKP 102


>gi|17545725|ref|NP_519127.1| ferredoxin [Ralstonia solanacearum GMI1000]
 gi|17428019|emb|CAD14708.1| probable ferredoxin [4fe-4s] protein [Ralstonia solanacearum
           GMI1000]
          Length = 268

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 23/64 (35%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ERCI C LC   CP  AI                 + +    C  C LC   CPVD I
Sbjct: 86  DPERCIGCTLCIQACPVDAIVGAPK----------AMHVVLEDWCTGCDLCVAPCPVDCI 135

Query: 119 VEGP 122
              P
Sbjct: 136 DMVP 139



 Score = 39.3 bits (90), Expect = 0.16,   Method: Composition-based stats.
 Identities = 14/21 (66%), Positives = 16/21 (76%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID  +CI C LC +ACPVDAI
Sbjct: 85  IDPERCIGCTLCIQACPVDAI 105


>gi|353337|prf||1103241A ferredoxin
          Length = 103

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + CIA   C   CP         P      ++     ++   CI+C  C   CPV AI
Sbjct: 41  DFDLCIADGSCITACPVNVFQWYETPGHPASEKKADP--VNQQACIFCMACVNVCPVAAI 98

Query: 119 VEGP 122
              P
Sbjct: 99  DVKP 102


>gi|147669597|ref|YP_001214415.1| glutamate synthase (NADPH) GltB2 subunit [Dehalococcoides sp. BAV1]
 gi|146270545|gb|ABQ17537.1| glutamate synthase (NADPH) GltB2 subunit [Dehalococcoides sp. BAV1]
          Length = 500

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 12/89 (13%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           +RCI CK+C   C       ++            +  +    C+ C  C   CP  A+V 
Sbjct: 16  DRCIKCKVCITQCSFDTHYYDADDD---------QIKVRNQNCVGCHRCVTFCPTGALVV 66

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWE 149
             N     E RQ   +  E + +   + E
Sbjct: 67  RNN---PLEYRQNANWTPEMIEDIFKQAE 92


>gi|319776070|ref|YP_004138558.1| Electron transport complex protein RnfB [Haemophilus influenzae
           F3047]
 gi|301170439|emb|CBW30046.1| predicted iron-sulfur protein [Haemophilus influenzae 10810]
 gi|317450661|emb|CBY86881.1| Electron transport complex protein RnfB [Haemophilus influenzae
           F3047]
          Length = 193

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 22/66 (33%), Gaps = 10/66 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C  C   CP  AI   +             + I    C  C LC   CP D
Sbjct: 104 FIDENMCIGCTKCIQACPVDAIIGTNK----------AMHTIIPDLCTGCELCVAPCPTD 153

Query: 117 AIVEGP 122
            I+  P
Sbjct: 154 CILMIP 159


>gi|298374891|ref|ZP_06984848.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides sp.
           3_1_19]
 gi|298267391|gb|EFI09047.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides sp.
           3_1_19]
          Length = 1183

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 27/82 (32%), Gaps = 16/82 (19%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG  A     N    CI C  C  +CP                A       +     +  
Sbjct: 676 RGVAAFVPVWNE-ANCIQCNQCAYVCPHASIRPFVLNDEEQKGASFAMLDVKAPAAMKGM 734

Query: 94  V-RYDIDMIKCIYCGLCQEACP 114
             R  +D++ C+ CG C + CP
Sbjct: 735 KFRMQVDVLDCLGCGNCADICP 756


>gi|296132680|ref|YP_003639927.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Thermincola sp. JR]
 gi|296031258|gb|ADG82026.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Thermincola potens JR]
          Length = 560

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 2/67 (2%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
            +      +C+ C  C   CP +AITI    +            ++ + C  CG+C   C
Sbjct: 479 MQPYVDASKCVVCLTCYRCCPHKAITIAYDRQ--FNNLYRSAAQVNPLACRRCGICAAEC 536

Query: 114 PVDAIVE 120
           P  AI  
Sbjct: 537 PAKAIHL 543


>gi|262384460|ref|ZP_06077594.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides sp.
           2_1_33B]
 gi|262293753|gb|EEY81687.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides sp.
           2_1_33B]
          Length = 1183

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 27/82 (32%), Gaps = 16/82 (19%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG  A     N    CI C  C  +CP                A       +     +  
Sbjct: 676 RGVAAFVPVWNE-ANCIQCNQCAYVCPHASIRPFVLNDEEQKGASFAMLDVKAPAAMKGM 734

Query: 94  V-RYDIDMIKCIYCGLCQEACP 114
             R  +D++ C+ CG C + CP
Sbjct: 735 KFRMQVDVLDCLGCGNCADICP 756


>gi|225568913|ref|ZP_03777938.1| hypothetical protein CLOHYLEM_04992 [Clostridium hylemonae DSM
           15053]
 gi|225162412|gb|EEG75031.1| hypothetical protein CLOHYLEM_04992 [Clostridium hylemonae DSM
           15053]
          Length = 571

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 11/73 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +R     +  C  C  C   C  +AI++++               I    CI CG C E 
Sbjct: 1   MRVIDFKDASCRHCYKCVRNCEVKAISVQNEQAH-----------IMKDHCINCGHCLEV 49

Query: 113 CPVDAIVEGPNFE 125
           CP +A     + E
Sbjct: 50  CPQNAKTFASDME 62


>gi|219852827|ref|YP_002467259.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanosphaerula palustris E1-9c]
 gi|219547086|gb|ACL17536.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanosphaerula palustris E1-9c]
          Length = 88

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 6/70 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIE------SGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
               E C  C  C   CP  A+ +       +         +++  DI    C  CG+C 
Sbjct: 6   HINLEHCTGCNNCVVACPVGALELHTVDPVTNEKIYLVKNGKSIVIDIKSELCAGCGVCV 65

Query: 111 EACPVDAIVE 120
           EACP D I  
Sbjct: 66  EACPHDVIRL 75


>gi|206896460|ref|YP_002247481.1| indolepyruvate oxidoreductase subunit IorA (IOR)(Indolepyruvate
           ferredoxin oxidoreductase subunit alpha)
           [Coprothermobacter proteolyticus DSM 5265]
 gi|206739077|gb|ACI18155.1| indolepyruvate oxidoreductase subunit IorA (IOR)(Indolepyruvate
           ferredoxin oxidoreductase subunit alpha)
           [Coprothermobacter proteolyticus DSM 5265]
          Length = 638

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 15/82 (18%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           Y   EE+C  C++C  +    A+  +   +         +  ID   C  C  C + CP 
Sbjct: 555 YAVEEEKCTGCRVCVNLLGCPALVFDRDKK---------KVSIDEDLCAGCSACAQVCPY 605

Query: 116 DAIVEG-----PNFE-FATETR 131
           +AI E       NF+  + E+R
Sbjct: 606 NAIYEKSIEGEKNFDVVSDESR 627


>gi|150007812|ref|YP_001302555.1| dihydropyrimidine dehydrogenase [Parabacteroides distasonis ATCC
           8503]
 gi|149936236|gb|ABR42933.1| oxidoreductase iron-sulfur protein [Parabacteroides distasonis ATCC
           8503]
          Length = 497

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 21/80 (26%), Gaps = 7/80 (8%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
                P       + R       C+ C  C   C                     +  ID
Sbjct: 425 PNIVPPEKLERTQIHRPTVDNSLCLGCGRCFVSCNDG-------GHQAIRFTSMRKPVID 477

Query: 100 MIKCIYCGLCQEACPVDAIV 119
             KC+ C LC   CP  AI 
Sbjct: 478 EQKCVGCHLCALVCPTFAIH 497


>gi|146291447|ref|YP_001181871.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella putrefaciens CN-32]
 gi|145563137|gb|ABP74072.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           putrefaciens CN-32]
          Length = 553

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 29/82 (35%), Gaps = 9/82 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E+C  C  C AICP  ++                        C+ CGLC+ ACP   I
Sbjct: 419 NVEKCTLCMSCVAICPTMSLQDGGDKPALH---------FIEQNCVQCGLCEAACPEKVI 469

Query: 119 VEGPNFEFATETRQELYYDKER 140
              P   F    RQ+    KE 
Sbjct: 470 SLTPQINFDKAARQQQNTLKEE 491



 Score = 38.9 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 11/53 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C   CPA AI+  +              +ID   C   G C  ACP  AI
Sbjct: 195 CNRCLNFCPADAISSVAKK-----------IEIDPYLCHGAGSCTSACPTGAI 236


>gi|157158894|ref|YP_001463498.1| dihydropyrimidine dehydrogenase [Escherichia coli E24377A]
 gi|191165356|ref|ZP_03027198.1| dihydroorotate dehydrogenase family protein [Escherichia coli B7A]
 gi|218554712|ref|YP_002387625.1| dihydropyrimidine dehydrogenase [Escherichia coli IAI1]
 gi|300819162|ref|ZP_07099364.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 107-1]
 gi|300926249|ref|ZP_07142052.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 182-1]
 gi|301328626|ref|ZP_07221687.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 78-1]
 gi|331653576|ref|ZP_08354577.1| putative oxidoreductase [Escherichia coli M718]
 gi|157080924|gb|ABV20632.1| dihydroorotate dehydrogenase family protein [Escherichia coli
           E24377A]
 gi|190904519|gb|EDV64226.1| dihydroorotate dehydrogenase family protein [Escherichia coli B7A]
 gi|218361480|emb|CAQ99069.1| putative oxidoreductase subunit [Escherichia coli IAI1]
 gi|300417678|gb|EFK00989.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 182-1]
 gi|300528315|gb|EFK49377.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 107-1]
 gi|300845018|gb|EFK72778.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 78-1]
 gi|320199742|gb|EFW74331.1| dihydropyrimidine dehydrogenase [Escherichia coli EC4100B]
 gi|331048425|gb|EGI20501.1| putative oxidoreductase [Escherichia coli M718]
          Length = 411

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +       ++C+ C  C   C         G +  + + +T     +  K
Sbjct: 324 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 378 CVGCLLCGHVCPVGCIELG 396


>gi|333017993|gb|EGK37298.1| electron transport complex protein rnfC [Shigella flexneri K-304]
          Length = 601

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 39/112 (34%), Gaps = 13/112 (11%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CP   +  +       G +       ++  CI CG C   CP  
Sbjct: 264 PQEEQSCIRCSACADACPVD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 321

Query: 117 AIVEGPNF-----EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            I     F     E A   ++E     +R      R+E+   R +  +   R
Sbjct: 322 NIPLVQYFRQEKAEIAAIRQEE-----KRAAEAKARFEARQAR-LEREKATR 367


>gi|332797634|ref|YP_004459134.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Acidianus hospitalis W1]
 gi|332695369|gb|AEE94836.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidianus
           hospitalis W1]
          Length = 104

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 29/91 (31%), Gaps = 7/91 (7%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
             +  P+E       +             + CIA   C   CP         P      +
Sbjct: 20  IKVYDPYEPPKKLGIWG-----TIVGVDFDLCIADGSCITACPVNVFQWYDTPGHPASEK 74

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           + +   I+   CI+C  C   CPV AI   P
Sbjct: 75  KAMP--INEQACIFCMACVNVCPVAAIDVKP 103


>gi|319937834|ref|ZP_08012236.1| pyruvate formate-lyase 2-activating enzyme [Coprobacillus sp. 29_1]
 gi|319807064|gb|EFW03680.1| pyruvate formate-lyase 2-activating enzyme [Coprobacillus sp. 29_1]
          Length = 298

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 11/67 (16%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
              ++CI C+ C  +CP  A+T ++            R  +D  KC+ C  C  ACP DA
Sbjct: 50  YDYDKCIHCQQCVHVCPHGALTHQNN-----------RILVDAKKCVGCLTCVHACPQDA 98

Query: 118 IVEGPNF 124
           +     +
Sbjct: 99  LTHEGEY 105


>gi|317502719|ref|ZP_07960830.1| pyruvate-ferredoxin oxidoreductase [Prevotella salivae DSM 15606]
 gi|315666163|gb|EFV05719.1| pyruvate-ferredoxin oxidoreductase [Prevotella salivae DSM 15606]
          Length = 1175

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 34/114 (29%), Gaps = 20/114 (17%)

Query: 28  FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH 87
           F    TI+  +  G+ +   RG  A        E CI C  C   CP   I         
Sbjct: 637 FVKHGTIDGTWHNGTAAYEKRGVAAFVPVWK-AENCIQCNKCAYCCPHATIRPFVLDEKE 695

Query: 88  DGTRRTVRYDIDMIK---------------CIYCGLCQEACP----VDAIVEGP 122
                    DI   K               C+ CG C + CP      A+V  P
Sbjct: 696 KAGFEDTTLDILAPKQLKGMQFRIQVDVLDCLGCGNCADVCPGKKGEKALVMTP 749


>gi|307292625|ref|ZP_07572471.1| formate dehydrogenase, alpha subunit [Sphingobium chlorophenolicum
           L-1]
 gi|306880691|gb|EFN11907.1| formate dehydrogenase, alpha subunit [Sphingobium chlorophenolicum
           L-1]
          Length = 948

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 3/81 (3%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T      G         +   D    +C+ CG C +
Sbjct: 160 YFDFDPSKCIVCSRCVRACDEVQGTFALTIEGRGFDSKVSPSQGQDFLSSECVSCGACVQ 219

Query: 112 ACPVDAIVEGPNFEFATETRQ 132
           ACP   + E    E  T  R 
Sbjct: 220 ACPTATLTEKKVVEIGTPDRS 240


>gi|302389267|ref|YP_003825088.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Thermosediminibacter oceani DSM 16646]
 gi|302199895|gb|ADL07465.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Thermosediminibacter oceani DSM 16646]
          Length = 597

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 30/96 (31%), Positives = 39/96 (40%), Gaps = 15/96 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            LRY F+ +   +   +K           AL  Y    ++C  C LC  +CPA AIT E 
Sbjct: 514 TLRY-FRDEYEAHIREKKCPAGAC----KALITYEITVDKCKGCGLCVKVCPAGAITGE- 567

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                    R   + I+  KCI C  C E C   AI
Sbjct: 568 ---------RKQPHAINREKCIKCNSCFERCRFGAI 594


>gi|293390124|ref|ZP_06634458.1| electron transport complex protein RnfB [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290950658|gb|EFE00777.1| electron transport complex protein RnfB [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 196

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 19/64 (29%), Gaps = 10/64 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C  C   CP  AI   +             + I    C  C LC   CP  
Sbjct: 107 FIDENMCIGCTKCIQACPVDAIIGTNK----------SMHTIIPDLCTGCELCVAPCPTS 156

Query: 117 AIVE 120
            I  
Sbjct: 157 CISM 160



 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/25 (52%), Positives = 15/25 (60%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           ID   CI C  C +ACPVDAI+   
Sbjct: 108 IDENMCIGCTKCIQACPVDAIIGTN 132


>gi|256840078|ref|ZP_05545587.1| oxidoreductase iron-sulfur protein [Parabacteroides sp. D13]
 gi|256739008|gb|EEU52333.1| oxidoreductase iron-sulfur protein [Parabacteroides sp. D13]
          Length = 497

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 21/80 (26%), Gaps = 7/80 (8%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
                P       + R       C+ C  C   C                     +  ID
Sbjct: 425 PNIVPPEKLERTQIHRPTVDNSLCLGCGRCFVSCNDG-------GHQAIRFTSMRKPVID 477

Query: 100 MIKCIYCGLCQEACPVDAIV 119
             KC+ C LC   CP  AI 
Sbjct: 478 EQKCVGCHLCALVCPTFAIH 497


>gi|256839310|ref|ZP_05544819.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Parabacteroides
           sp. D13]
 gi|256738240|gb|EEU51565.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Parabacteroides
           sp. D13]
          Length = 1182

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 27/82 (32%), Gaps = 16/82 (19%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG  A     N    CI C  C  +CP                A       +     +  
Sbjct: 676 RGVAAFVPVWNE-ANCIQCNQCAYVCPHASIRPFVLNDEEQKGASFAMLDVKAPAAMKGM 734

Query: 94  V-RYDIDMIKCIYCGLCQEACP 114
             R  +D++ C+ CG C + CP
Sbjct: 735 KFRMQVDVLDCLGCGNCADICP 756


>gi|85860696|ref|YP_462898.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus
           aciditrophicus SB]
 gi|85723787|gb|ABC78730.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus
           aciditrophicus SB]
          Length = 642

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 27/64 (42%), Gaps = 10/64 (15%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            AL  Y    E+C AC+LC   CPA AI               +   ID  KC  CG C 
Sbjct: 557 KALIAYVIDPEQCRACQLCVKKCPAGAIDGGKD----------LISVIDQEKCTKCGTCF 606

Query: 111 EACP 114
           E CP
Sbjct: 607 EVCP 610



 Score = 35.8 bits (81), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 18/45 (40%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
            I          +  + Y ID  +C  C LC + CP  AI  G +
Sbjct: 545 HIREKRCPALFCKALIAYVIDPEQCRACQLCVKKCPAGAIDGGKD 589


>gi|27366362|ref|NP_761890.1| electron transport complex protein RnfB [Vibrio vulnificus CMCP6]
 gi|37679375|ref|NP_933984.1| electron transport complex protein RnfB [Vibrio vulnificus YJ016]
 gi|320156873|ref|YP_004189252.1| electron transport complex protein RnfB [Vibrio vulnificus
           MO6-24/O]
 gi|33301651|sp|Q8D889|RNFB_VIBVU RecName: Full=Electron transport complex protein rnfB
 gi|71153697|sp|Q7MM82|RNFB_VIBVY RecName: Full=Electron transport complex protein rnfB
 gi|27362563|gb|AAO11417.1| Electron transport complex protein rnfB [Vibrio vulnificus CMCP6]
 gi|37198118|dbj|BAC93955.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Vibrio
           vulnificus YJ016]
 gi|319932185|gb|ADV87049.1| electron transport complex protein RnfB [Vibrio vulnificus
           MO6-24/O]
          Length = 198

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 29/87 (33%), Gaps = 11/87 (12%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103
           S         +     E+ CI C  C   CP  AI   +             + +   +C
Sbjct: 95  SAHDLEGKVKKVAFIHEDMCIGCTKCIQACPVDAIVGGTK----------ALHTVIKDEC 144

Query: 104 IYCGLCQEACPVDAIVEGPNFEFATET 130
             C LC   CP D I   P  E  TET
Sbjct: 145 TGCDLCVAPCPTDCIEMIP-LETTTET 170


>gi|325294615|ref|YP_004281129.1| NADH dehydrogenase (quinone) [Desulfurobacterium thermolithotrophum
           DSM 11699]
 gi|325065063|gb|ADY73070.1| NADH dehydrogenase (quinone) [Desulfurobacterium thermolithotrophum
           DSM 11699]
          Length = 639

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 10/66 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L +Y   +E C  C +C   CP  AI  E          R   + ID   CI CG C E 
Sbjct: 573 LIQYVIIQEACKGCTVCALKCPVNAIYGE----------RKKPHVIDQSACIKCGACLEV 622

Query: 113 CPVDAI 118
           C  DA+
Sbjct: 623 CKFDAV 628



 Score = 35.8 bits (81), Expect = 1.7,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 18/50 (36%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           E         + +        +  ++Y I    C  C +C   CPV+AI 
Sbjct: 550 EYFYEEYIEHVVNKRCPGKVCKDLIQYVIIQEACKGCTVCALKCPVNAIY 599


>gi|319940750|ref|ZP_08015091.1| hydrogenase [Sutterella wadsworthensis 3_1_45B]
 gi|319805810|gb|EFW02584.1| hydrogenase [Sutterella wadsworthensis 3_1_45B]
          Length = 456

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 33/100 (33%), Gaps = 18/100 (18%)

Query: 27  FFKAKTTINY--PFEKGS------TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78
            FK   TI+   P E              R           ++ C+ C  C   CP  AI
Sbjct: 1   MFKDTMTIHTFGPGENAYGQNGGAYEGNLRKGELRGIIHINKDHCVGCDTCRKFCPTDAI 60

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               G +            I    C+YCG C  ACP +AI
Sbjct: 61  KGGLGAKHE----------IIDDACLYCGQCLVACPFNAI 90


>gi|301309080|ref|ZP_07215024.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides sp.
           20_3]
 gi|300832762|gb|EFK63388.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides sp.
           20_3]
          Length = 1183

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 27/82 (32%), Gaps = 16/82 (19%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG  A     N    CI C  C  +CP                A       +     +  
Sbjct: 676 RGVAAFVPVWNE-ANCIQCNQCAYVCPHASIRPFVLNDEEQKGASFAMLDVKAPAAMKGM 734

Query: 94  V-RYDIDMIKCIYCGLCQEACP 114
             R  +D++ C+ CG C + CP
Sbjct: 735 KFRMQVDVLDCLGCGNCADICP 756


>gi|301310152|ref|ZP_07216091.1| dihydroorotate dehydrogenase family protein [Bacteroides sp. 20_3]
 gi|300831726|gb|EFK62357.1| dihydroorotate dehydrogenase family protein [Bacteroides sp. 20_3]
          Length = 497

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 21/80 (26%), Gaps = 7/80 (8%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
                P       + R       C+ C  C   C                     +  ID
Sbjct: 425 PNIVPPEKLERTQIHRPTVDNSLCLGCGRCFVSCNDG-------GHQAIRFTSMRKPVID 477

Query: 100 MIKCIYCGLCQEACPVDAIV 119
             KC+ C LC   CP  AI 
Sbjct: 478 EQKCVGCHLCALVCPTFAIH 497


>gi|262381679|ref|ZP_06074817.1| oxidoreductase iron-sulfur protein [Bacteroides sp. 2_1_33B]
 gi|262296856|gb|EEY84786.1| oxidoreductase iron-sulfur protein [Bacteroides sp. 2_1_33B]
          Length = 497

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 21/80 (26%), Gaps = 7/80 (8%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
                P       + R       C+ C  C   C                     +  ID
Sbjct: 425 PNIVPPEKLERTQIHRPTVDNSLCLGCGRCFVSCNDG-------GHQAIRFTSMRKPVID 477

Query: 100 MIKCIYCGLCQEACPVDAIV 119
             KC+ C LC   CP  AI 
Sbjct: 478 EQKCVGCHLCALVCPTFAIH 497


>gi|255525710|ref|ZP_05392642.1| molybdopterin oxidoreductase [Clostridium carboxidivorans P7]
 gi|296184814|ref|ZP_06853225.1| pyridine nucleotide-disulfide oxidoreductase [Clostridium
           carboxidivorans P7]
 gi|255510612|gb|EET86920.1| molybdopterin oxidoreductase [Clostridium carboxidivorans P7]
 gi|296050596|gb|EFG90019.1| pyridine nucleotide-disulfide oxidoreductase [Clostridium
           carboxidivorans P7]
          Length = 1197

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 59  GEERCIACKLCEAICPAQA-ITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115
             ++CI C  C   C     IT     +    ++    +++ + +  CI CG C + CP 
Sbjct: 607 NPDKCILCGQCVRACEEFIGITAIGLEKRGFDSKVIPEFNLPLEESSCISCGQCVDVCPT 666

Query: 116 DAIVE 120
            A +E
Sbjct: 667 GACME 671



 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 23/82 (28%), Gaps = 14/82 (17%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAI----------CPAQAITIESGPRCHDGTR 91
             S  F  E ALR       RC+ C   +                   I          +
Sbjct: 544 PISETFTEEAALR----EASRCLECGCHDYFECKLVNYIEDYNVDTKKISGEKHKRKEEQ 599

Query: 92  RTVRYDIDMIKCIYCGLCQEAC 113
                + +  KCI CG C  AC
Sbjct: 600 NHPFIERNPDKCILCGQCVRAC 621


>gi|255015651|ref|ZP_05287777.1| putative pyruvate-flavodoxin oxidoreductase [Bacteroides sp. 2_1_7]
          Length = 1183

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 27/82 (32%), Gaps = 16/82 (19%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG  A     N    CI C  C  +CP                A       +     +  
Sbjct: 676 RGVAAFVPVWNE-ANCIQCNQCAYVCPHASIRPFVLNDEEQKGASFAMLDVKAPAAMKGM 734

Query: 94  V-RYDIDMIKCIYCGLCQEACP 114
             R  +D++ C+ CG C + CP
Sbjct: 735 KFRMQVDVLDCLGCGNCADICP 756


>gi|207743646|ref|YP_002260038.1| ferredoxin [4fe-4s] protein [Ralstonia solanacearum IPO1609]
 gi|206595045|emb|CAQ61972.1| ferredoxin [4fe-4s] protein [Ralstonia solanacearum IPO1609]
          Length = 265

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 22/64 (34%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E CI C LC   CP  AI                 + +    C  C LC   CPVD I
Sbjct: 83  DPEHCIGCTLCIQACPVDAIVGAPK----------AMHVVLADWCTGCDLCVAPCPVDCI 132

Query: 119 VEGP 122
              P
Sbjct: 133 DMVP 136



 Score = 38.5 bits (88), Expect = 0.27,   Method: Composition-based stats.
 Identities = 14/21 (66%), Positives = 15/21 (71%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C LC +ACPVDAI
Sbjct: 82  IDPEHCIGCTLCIQACPVDAI 102


>gi|78485379|ref|YP_391304.1| electron transport complex, RnfABCDGE type, B subunit
           [Thiomicrospira crunogena XCL-2]
 gi|78363665|gb|ABB41630.1| NADH oxidoreductase, RnfABCDGE type, B subunit [Thiomicrospira
           crunogena XCL-2]
          Length = 190

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 28/92 (30%), Gaps = 13/92 (14%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T   P E  +       +   +   +    CI C  C   CP  AI   +         
Sbjct: 85  ITHREPKEMEAEPEDIAQKIVAKIDED---ICIGCVHCIKACPVDAILGATKM------- 134

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
               + +   +C  C  C   CPVD I   P 
Sbjct: 135 ---MHTVIESECTGCEKCIPVCPVDCIDMIPQ 163


>gi|270308168|ref|YP_003330226.1| hydrogenase subunit, NADH dehydrogenase subunit E subfamily
           [Dehalococcoides sp. VS]
 gi|270154060|gb|ACZ61898.1| hydrogenase subunit, NADH dehydrogenase subunit E subfamily
           [Dehalococcoides sp. VS]
          Length = 641

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 10/64 (15%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            AL  +    E+C AC +C   CP  AI    G          + + I+  KCI CG C 
Sbjct: 558 KALLTFYIDPEKCKACMICARNCPTDAIKGGKG----------LIHTIEQDKCIKCGACL 607

Query: 111 EACP 114
           + CP
Sbjct: 608 DTCP 611



 Score = 37.4 bits (85), Expect = 0.76,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 20/53 (37%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           +         I++        +  + + ID  KC  C +C   CP DAI  G 
Sbjct: 537 KYFRHEYIDHIKNKHCEAGVCKALLTFYIDPEKCKACMICARNCPTDAIKGGK 589


>gi|298528242|ref|ZP_07015646.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511894|gb|EFI35796.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 593

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 15/96 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            +RY F+ +  I+    K           +L  +   EE C  C +C+ +CPA AI    
Sbjct: 510 TVRY-FRDEYNIHIRDRKCPALVC----KSLLTFSCIEETCTGCGMCKRVCPADAIR--- 561

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                 GTR+   + ID   C+ CG C ++C   AI
Sbjct: 562 ------GTRKKPHF-IDQELCVKCGSCFDSCKFGAI 590



 Score = 38.5 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 16/53 (30%)

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
                    I I          +  + +      C  CG+C+  CP DAI   
Sbjct: 511 VRYFRDEYNIHIRDRKCPALVCKSLLTFSCIEETCTGCGMCKRVCPADAIRGT 563


>gi|126739780|ref|ZP_01755471.1| iron-sulfur cluster-binding protein [Roseobacter sp. SK209-2-6]
 gi|126719012|gb|EBA15723.1| iron-sulfur cluster-binding protein [Roseobacter sp. SK209-2-6]
          Length = 653

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 31/103 (30%), Gaps = 13/103 (12%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
            ++            L       E C  C  C ++CP+ A+                +  
Sbjct: 484 DQQLPLPQGAPYGAVLI----DTESCTLCLSCASLCPSGALGDNPD---------LPQLR 530

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140
                C+ CG+C   CP  AI   P     ++   +    +E 
Sbjct: 531 FQEDACLQCGICANLCPEQAIKLEPRLNLGSDALSQKVLHEEE 573



 Score = 38.9 bits (89), Expect = 0.20,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 16/64 (25%), Gaps = 4/64 (6%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
              N    C           A              + +     ID + C  CG C   CP
Sbjct: 260 YLKNDPVLC----AHSRASQAGCSKCLDHCPTSAISPKGDHVTIDPMICAGCGACASLCP 315

Query: 115 VDAI 118
             AI
Sbjct: 316 SGAI 319


>gi|118594443|ref|ZP_01551790.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfC
           [Methylophilales bacterium HTCC2181]
 gi|118440221|gb|EAV46848.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfC
           [Methylophilales bacterium HTCC2181]
          Length = 510

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 33/107 (30%), Gaps = 11/107 (10%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             +    N    CI C  C   CP   +  +         +     + ++  CI CG C 
Sbjct: 357 PEMIENNNPVLPCIRCAKCAEACPVN-LQPQELFWFSQSNQFEKAENYNLFDCIECGCCS 415

Query: 111 EACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIV 157
             CP   I     + +A        Y KE         E++I R   
Sbjct: 416 YVCP-SNIPLVQYYRYAKSEIISDRYAKE---------EADIARERN 452


>gi|117617460|ref|YP_857144.1| electron transport complex protein RnfB [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|166225078|sp|A0KLJ3|RNFB_AERHH RecName: Full=Electron transport complex protein rnfB
 gi|117558867|gb|ABK35815.1| electron transport complex, RnfABCDGE type, B subunit [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 187

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 27/84 (32%), Gaps = 10/84 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E              +     E++CI C  C   CP  AI   +             + +
Sbjct: 91  EPQPLGGAEAAAPIKKVAFIHEDQCIGCTKCIQACPVDAIVGATK----------AMHTV 140

Query: 99  DMIKCIYCGLCQEACPVDAIVEGP 122
              +C  C LC + CP D I   P
Sbjct: 141 IADECTGCDLCVDPCPTDCIEMIP 164


>gi|326203111|ref|ZP_08192977.1| LOW QUALITY PROTEIN: cobyrinic acid ac-diamide synthase
           [Clostridium papyrosolvens DSM 2782]
 gi|325986757|gb|EGD47587.1| LOW QUALITY PROTEIN: cobyrinic acid ac-diamide synthase
           [Clostridium papyrosolvens DSM 2782]
          Length = 287

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 15/77 (19%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
           P     +  ++      +CI C LCE  C   AI                 +++ + +C 
Sbjct: 51  PVINDFYGFQKAFIDNSKCINCGLCEENCHFGAIRN---------------FEVSVYECE 95

Query: 105 YCGLCQEACPVDAIVEG 121
            CG+C E CP +A+   
Sbjct: 96  GCGVCCEICPQNAVSMT 112



 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 10/74 (13%)

Query: 63  CIACKLCEAI--CPAQAI-----TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
            I    C++   C   A        E+     +      +  ID  KCI CGLC+E C  
Sbjct: 22  FIKLSNCKSFADCDVDAPNLHLVMSENMEPVINDFYGFQKAFIDNSKCINCGLCEENCHF 81

Query: 116 DAIVEGPNFEFATE 129
            AI    NFE +  
Sbjct: 82  GAIR---NFEVSVY 92


>gi|312879272|ref|ZP_07739072.1| ferredoxin [Aminomonas paucivorans DSM 12260]
 gi|310782563|gb|EFQ22961.1| ferredoxin [Aminomonas paucivorans DSM 12260]
          Length = 248

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 20/65 (30%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           R  P   E CI C  C   C                 + +  ++     C+ C  C E C
Sbjct: 117 RLSPYDGELCIRCGRCVRACALDGTDALGFALRGWDRKVSPPFEEAPESCVGCLACAEVC 176

Query: 114 PVDAI 118
           P   I
Sbjct: 177 PTGHI 181


>gi|308272797|emb|CBX29401.1| hypothetical protein N47_J03820 [uncultured Desulfobacterium sp.]
          Length = 338

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 10/100 (10%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT--RRTVRYDIDMI 101
                 +  L  + +   +C+ C  C A CP +AI              R      ID  
Sbjct: 48  PECINFQEELFHHAD---KCVRCGTCVAACPEKAIAPPGKRTEKCTEDLRDVKPPIIDRS 104

Query: 102 KCIYCGLCQEACPVDAIV-----EGPNFEFATETRQELYY 136
           KC  C  C + CP +AI         +  F+     +++Y
Sbjct: 105 KCTLCMKCVDVCPQNAITRVSSVMTLDEAFSEIKSDDVFY 144


>gi|302344258|ref|YP_003808787.1| ferredoxin [Desulfarculus baarsii DSM 2075]
 gi|301640871|gb|ADK86193.1| ferredoxin [Desulfarculus baarsii DSM 2075]
          Length = 255

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 26/98 (26%)

Query: 25  RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84
           R           P          +      R+   ++ C+ C LC  +C        +  
Sbjct: 85  RKMLVELILSRCPENAFVRDLAAQYGLERPRFQCDQDNCLLCGLCCRVCELMGPRAITFA 144

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                   T  +      C+ CG C   CP   IV   
Sbjct: 145 GRGTEIEVTTPFHCVSDDCLACGACAAVCPTGNIVMED 182


>gi|257066615|ref|YP_003152871.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Anaerococcus prevotii DSM 20548]
 gi|256798495|gb|ACV29150.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Anaerococcus
           prevotii DSM 20548]
          Length = 57

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 11/65 (16%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
             Y   E  CI+C  CE  CP  AI+                Y+ID   CI CG C   C
Sbjct: 1   MAYRIDENTCISCGSCEGECPVGAISQGDAA-----------YEIDADACIDCGSCAAVC 49

Query: 114 PVDAI 118
           PV+AI
Sbjct: 50  PVEAI 54



 Score = 34.3 bits (77), Expect = 5.8,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 16/27 (59%)

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGP 122
           Y ID   CI CG C+  CPV AI +G 
Sbjct: 3   YRIDENTCISCGSCEGECPVGAISQGD 29


>gi|257791889|ref|YP_003182495.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Eggerthella lenta
           DSM 2243]
 gi|257475786|gb|ACV56106.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Eggerthella lenta
           DSM 2243]
          Length = 1180

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 28/99 (28%), Gaps = 17/99 (17%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
           FE+G+ +   RG             CI C  C   CP   I   +               
Sbjct: 673 FEQGAAAYEKRGVAVSVPAW-DAATCIQCNQCAFACPHATIRPFALTEEEAAAAPAATVM 731

Query: 98  ----------------IDMIKCIYCGLCQEACPVDAIVE 120
                           I    C+ CG+C   CP D++  
Sbjct: 732 VPAKGKAAAGLQYTLAISPFDCMGCGVCVNVCPSDSLAM 770


>gi|258405160|ref|YP_003197902.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfohalobium
           retbaense DSM 5692]
 gi|257797387|gb|ACV68324.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfohalobium
           retbaense DSM 5692]
          Length = 1218

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/112 (18%), Positives = 34/112 (30%), Gaps = 20/112 (17%)

Query: 31  KTTINYPFEKGSTS--PRFRGEHALRRYPNGEERCIACKLCEAICPAQAI---------- 78
             +   P      +     +   A+       + CI C  C  +CP  AI          
Sbjct: 653 PVSAFEPDGTFPVATAQYEKRGVAINVPEWIADNCIQCNQCAFVCPHSAILPVLLTDEEK 712

Query: 79  ------TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP--VDAIVEGP 122
                       +  D      R  ++ + C+ CG C + CP    A+V  P
Sbjct: 713 EAAPESFNTIDAKGKDVKGLHFRIQVNTMDCLGCGNCADICPAKESALVMKP 764


>gi|89519313|gb|ABD75790.1| iron-sulfur cluster-binding protein [uncultured bacterium]
          Length = 380

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 12/78 (15%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
             P FR    +R      E+CI C  C   CP Q I++                +I    
Sbjct: 304 VGPVFRNAFTVRP-QVVSEKCIGCGFCRDACPVQVISMVE-----------KHAEIKQRH 351

Query: 103 CIYCGLCQEACPVDAIVE 120
           CI+C  C E CP DAI  
Sbjct: 352 CIHCYCCHEMCPHDAIEL 369



 Score = 41.2 bits (95), Expect = 0.042,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 16/31 (51%)

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           VR  +   KCI CG C++ACPV  I      
Sbjct: 314 VRPQVVSEKCIGCGFCRDACPVQVISMVEKH 344


>gi|43863|emb|CAA31501.1| unnamed protein product [Klebsiella pneumoniae]
          Length = 1171

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 23/83 (27%), Gaps = 14/83 (16%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDG---------TR 91
             +   AL       E C  C  C  ICP  AI       E       G           
Sbjct: 674 WEKRGIALEVPVWQPEGCTQCNQCAFICPHAAIRPALLNGEEHDAAPVGLLSKPAQGAKE 733

Query: 92  RTVRYDIDMIKCIYCGLCQEACP 114
                 I  + C  CG C + CP
Sbjct: 734 YHYHLAISPLDCSGCGNCVDICP 756


>gi|68304986|gb|AAY89997.1| hypothetical protein blr6742 [uncultured bacterium BAC13K9BAC]
          Length = 546

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 33/117 (28%), Gaps = 18/117 (15%)

Query: 24  LRYFFKAKTTINY------PFEKGSTSPRFRGEHALRRYPNGEERCIAC------KLC-- 69
           L+   K   T         P  K  +S  +   +      +    C  C        C  
Sbjct: 422 LKDLPKRTFTAEVELGYNKPESKKESSRCYLCHYQFAINNDLCVLCDECLLVRPVHECIK 481

Query: 70  ----EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
               + I     ++ +                ID   C+ CG C++ACP  AI    
Sbjct: 482 ELSSKNIDDNGEVSFKKIEPGKSHGIYHGLLYIDPKVCVRCGECEKACPTGAISLTK 538


>gi|24374053|ref|NP_718096.1| electron transport complex protein RnfB [Shewanella oneidensis
           MR-1]
 gi|81744759|sp|Q8EE80|RNFB_SHEON RecName: Full=Electron transport complex protein rnfB
 gi|24348528|gb|AAN55540.1|AE015693_2 iron-sulfur cluster-binding protein [Shewanella oneidensis MR-1]
          Length = 193

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 25/72 (34%), Gaps = 10/72 (13%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
              +     E+ CI C  C   CP  AI               + + +    C  C LC 
Sbjct: 102 QVKKVAYIREDECIGCTKCIQACPVDAIIGAGK----------LMHTVLTADCTGCDLCV 151

Query: 111 EACPVDAIVEGP 122
           E CPVD I   P
Sbjct: 152 EPCPVDCIDMVP 163


>gi|128284|sp|P03833|NIFJ_KLEPN RecName: Full=Pyruvate-flavodoxin oxidoreductase
 gi|43821|emb|CAA31665.1| unnamed protein product [Klebsiella pneumoniae]
          Length = 1171

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 23/83 (27%), Gaps = 14/83 (16%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDG---------TR 91
             +   AL       E C  C  C  ICP  AI       E       G           
Sbjct: 674 WEKRGIALEVPVWQPEGCTQCNQCAFICPHAAIRPALLNGEEHDAAPVGLLSKPAQGAKE 733

Query: 92  RTVRYDIDMIKCIYCGLCQEACP 114
                 I  + C  CG C + CP
Sbjct: 734 YHYHLAISPLDCSGCGNCVDICP 756


>gi|15641031|ref|NP_230662.1| electron transport complex protein RnfB [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|121587394|ref|ZP_01677164.1| RnfB-related protein [Vibrio cholerae 2740-80]
 gi|121729983|ref|ZP_01682400.1| RnfB-related protein [Vibrio cholerae V52]
 gi|147674952|ref|YP_001216488.1| electron transport complex protein RnfB [Vibrio cholerae O395]
 gi|153215075|ref|ZP_01949792.1| RnfB-related protein [Vibrio cholerae 1587]
 gi|153800913|ref|ZP_01955499.1| RnfB-related protein [Vibrio cholerae MZO-3]
 gi|153819293|ref|ZP_01971960.1| RnfB-related protein [Vibrio cholerae NCTC 8457]
 gi|153823433|ref|ZP_01976100.1| RnfB-related protein [Vibrio cholerae B33]
 gi|153824911|ref|ZP_01977578.1| RnfB-related protein [Vibrio cholerae MZO-2]
 gi|153829521|ref|ZP_01982188.1| RnfB-related protein [Vibrio cholerae 623-39]
 gi|227081190|ref|YP_002809741.1| RnfB-related protein [Vibrio cholerae M66-2]
 gi|229505385|ref|ZP_04394895.1| electron transport complex protein RnfB [Vibrio cholerae BX 330286]
 gi|229510945|ref|ZP_04400424.1| electron transport complex protein RnfB [Vibrio cholerae B33]
 gi|229515402|ref|ZP_04404861.1| electron transport complex protein RnfB [Vibrio cholerae TMA 21]
 gi|229518066|ref|ZP_04407510.1| electron transport complex protein RnfB [Vibrio cholerae RC9]
 gi|229529891|ref|ZP_04419281.1| electron transport complex protein RnfB [Vibrio cholerae 12129(1)]
 gi|229608404|ref|YP_002879052.1| electron transport complex protein RnfB [Vibrio cholerae MJ-1236]
 gi|254291761|ref|ZP_04962547.1| RnfB-related protein [Vibrio cholerae AM-19226]
 gi|254848146|ref|ZP_05237496.1| electron transport complex protein rnfB [Vibrio cholerae MO10]
 gi|255745441|ref|ZP_05419389.1| electron transport complex protein RnfB [Vibrio cholera CIRS 101]
 gi|262151307|ref|ZP_06028442.1| electron transport complex protein RnfB [Vibrio cholerae INDRE
           91/1]
 gi|262167227|ref|ZP_06034939.1| electron transport complex protein RnfB [Vibrio cholerae RC27]
 gi|262191541|ref|ZP_06049724.1| electron transport complex protein RnfB [Vibrio cholerae CT
           5369-93]
 gi|298498871|ref|ZP_07008678.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|17369129|sp|Q9KT87|RNFB_VIBCH RecName: Full=Electron transport complex protein rnfB
 gi|172047411|sp|A5F2R3|RNFB_VIBC3 RecName: Full=Electron transport complex protein rnfB
 gi|254807927|sp|C3LTR4|RNFB_VIBCM RecName: Full=Electron transport complex protein rnfB
 gi|9655480|gb|AAF94177.1| RnfB-related protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|121548397|gb|EAX58459.1| RnfB-related protein [Vibrio cholerae 2740-80]
 gi|121628269|gb|EAX60782.1| RnfB-related protein [Vibrio cholerae V52]
 gi|124114938|gb|EAY33758.1| RnfB-related protein [Vibrio cholerae 1587]
 gi|124123504|gb|EAY42247.1| RnfB-related protein [Vibrio cholerae MZO-3]
 gi|126510153|gb|EAZ72747.1| RnfB-related protein [Vibrio cholerae NCTC 8457]
 gi|126519042|gb|EAZ76265.1| RnfB-related protein [Vibrio cholerae B33]
 gi|146316835|gb|ABQ21374.1| RnfB-related protein [Vibrio cholerae O395]
 gi|148874981|gb|EDL73116.1| RnfB-related protein [Vibrio cholerae 623-39]
 gi|149741423|gb|EDM55453.1| RnfB-related protein [Vibrio cholerae MZO-2]
 gi|150422354|gb|EDN14315.1| RnfB-related protein [Vibrio cholerae AM-19226]
 gi|227009078|gb|ACP05290.1| RnfB-related protein [Vibrio cholerae M66-2]
 gi|227012833|gb|ACP09043.1| RnfB-related protein [Vibrio cholerae O395]
 gi|229333665|gb|EEN99151.1| electron transport complex protein RnfB [Vibrio cholerae 12129(1)]
 gi|229344781|gb|EEO09755.1| electron transport complex protein RnfB [Vibrio cholerae RC9]
 gi|229347171|gb|EEO12131.1| electron transport complex protein RnfB [Vibrio cholerae TMA 21]
 gi|229350910|gb|EEO15851.1| electron transport complex protein RnfB [Vibrio cholerae B33]
 gi|229357608|gb|EEO22525.1| electron transport complex protein RnfB [Vibrio cholerae BX 330286]
 gi|229371059|gb|ACQ61482.1| electron transport complex protein RnfB [Vibrio cholerae MJ-1236]
 gi|254843851|gb|EET22265.1| electron transport complex protein rnfB [Vibrio cholerae MO10]
 gi|255736516|gb|EET91913.1| electron transport complex protein RnfB [Vibrio cholera CIRS 101]
 gi|262024371|gb|EEY43060.1| electron transport complex protein RnfB [Vibrio cholerae RC27]
 gi|262030923|gb|EEY49552.1| electron transport complex protein RnfB [Vibrio cholerae INDRE
           91/1]
 gi|262032595|gb|EEY51150.1| electron transport complex protein RnfB [Vibrio cholerae CT
           5369-93]
 gi|297543204|gb|EFH79254.1| conserved hypothetical protein [Vibrio cholerae MAK 757]
 gi|327483732|gb|AEA78139.1| Electron transport complex protein RnfB [Vibrio cholerae LMA3894-4]
          Length = 195

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 24/79 (30%), Gaps = 10/79 (12%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103
           S               E+ CI C  C   CP  AI   +             + +   +C
Sbjct: 95  SAHDLDNKVKMVAFIHEDMCIGCTKCIQACPVDAIVGGNK----------AVHTVIKNEC 144

Query: 104 IYCGLCQEACPVDAIVEGP 122
             C LC   CP D I   P
Sbjct: 145 TGCDLCVAPCPTDCIEMIP 163


>gi|310828126|ref|YP_003960483.1| hypothetical protein ELI_2538 [Eubacterium limosum KIST612]
 gi|308739860|gb|ADO37520.1| hypothetical protein ELI_2538 [Eubacterium limosum KIST612]
          Length = 506

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110
              +E+C+ C  C   CP +AI     P         +  D      I+  KC+ CG+C 
Sbjct: 145 HIDKEKCVRCGRCREACPYEAIVKYDRPCAAACGVDAIESDELGRAKINYDKCVSCGMCL 204

Query: 111 EACPVDAI 118
             CP  AI
Sbjct: 205 VNCPFGAI 212



 Score = 42.0 bits (97), Expect = 0.025,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 13/60 (21%)

Query: 61  ERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C  C    C ++CP  A+ ++ G              ID  KC+ CG C+EACP +AI
Sbjct: 118 DNCRGCLAHPCVSVCPVNAVYMKDGKSH-----------IDKEKCVRCGRCREACPYEAI 166


>gi|225874248|ref|YP_002755707.1| pyruvate ferrodoxin oxidoreductase [Acidobacterium capsulatum ATCC
           51196]
 gi|225793282|gb|ACO33372.1| pyruvate ferrodoxin oxidoreductase [Acidobacterium capsulatum ATCC
           51196]
          Length = 1217

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/118 (18%), Positives = 32/118 (27%), Gaps = 24/118 (20%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ----------------AITIESG 83
             +T+   +   A       EE CI C  C  +CP                  A    + 
Sbjct: 676 PTATAKWEKRNIAQFIPVWDEELCIQCGKCVLVCPHAVIRAKVYDSALAADAPATFKHAT 735

Query: 84  PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV--------DAIVEGPNFEFATETRQE 133
           P+      +     +    C  C LC E CP          A+   P        R+ 
Sbjct: 736 PKWRGMDNQLYSLQVAPEDCTGCTLCVEVCPAKSKADPSHKALNMQPQQPLRAAEREN 793


>gi|163748440|ref|ZP_02155694.1| formate dehydrogenase, alpha subunit [Shewanella benthica KT99]
 gi|161332018|gb|EDQ02695.1| formate dehydrogenase, alpha subunit [Shewanella benthica KT99]
          Length = 1434

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 22/75 (29%), Gaps = 15/75 (20%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---------------IDMIKC 103
              RCI C  C  IC  QA          +                        ++   C
Sbjct: 656 DANRCINCGACVDICQQQAGHHAISFAADNYQALPTEVTGQLSRRAPRAGFSASMNDSNC 715

Query: 104 IYCGLCQEACPVDAI 118
           + CG C + CP  A+
Sbjct: 716 VQCGGCVQVCPTGAL 730


>gi|154500042|ref|ZP_02038080.1| hypothetical protein BACCAP_03700 [Bacteroides capillosus ATCC
           29799]
 gi|150271132|gb|EDM98401.1| hypothetical protein BACCAP_03700 [Bacteroides capillosus ATCC
           29799]
          Length = 387

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 11/70 (15%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           AL   P   E C+ C +C A CP +AIT+           +  R  ID  KCI C  C E
Sbjct: 319 ALSATPRVREACVGCGICAASCPVKAITV-----------KNRRARIDTGKCIRCYCCHE 367

Query: 112 ACPVDAIVEG 121
            CP  A+   
Sbjct: 368 LCPHKAVELH 377


>gi|150019923|ref|YP_001305277.1| cobyrinic acid a,c-diamide synthase [Thermosipho melanesiensis
           BI429]
 gi|149792444|gb|ABR29892.1| Cobyrinic acid a,c-diamide synthase [Thermosipho melanesiensis
           BI429]
          Length = 290

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 15/83 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            + +C  C +C+ +C  +AI  ++             YD+D   C  C  C  ACP +AI
Sbjct: 64  DQTKCDKCGICKKVCRFEAIGFKNEK-----------YDVDQFACEGCNACVIACPRNAI 112

Query: 119 V----EGPNFEFATETRQELYYD 137
                    + ++  T ++    
Sbjct: 113 RLETALSGEYYYSVTTNEKEIIH 135



 Score = 34.7 bits (78), Expect = 3.9,   Method: Composition-based stats.
 Identities = 11/55 (20%), Positives = 19/55 (34%)

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           C+       +      +         +  ID  KC  CG+C++ C  +AI     
Sbjct: 34  CDVDAANLNLMFSGEIKEKYDYYGGKKAVIDQTKCDKCGICKKVCRFEAIGFKNE 88


>gi|119505634|ref|ZP_01627705.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB [marine
           gamma proteobacterium HTCC2080]
 gi|119458577|gb|EAW39681.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB [marine
           gamma proteobacterium HTCC2080]
          Length = 200

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 29/84 (34%), Gaps = 10/84 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E  +       E         E+ CI C  C   CP  AI   +           + + +
Sbjct: 97  EPQALDAEHGEEKEPNVAYIREDECIGCTKCIQACPVDAILGAAK----------LMHTV 146

Query: 99  DMIKCIYCGLCQEACPVDAIVEGP 122
              +C  C LC E CPVD I   P
Sbjct: 147 IADECTGCDLCVEPCPVDCIDMLP 170


>gi|67906754|gb|AAY82817.1| predicted iron-sulfur cluster-binding protein [uncultured bacterium
           MedeBAC46A06]
          Length = 672

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 22/70 (31%), Gaps = 9/70 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + C  C  C + CPA A+                        C+ CG+C   CP   I
Sbjct: 526 DTDNCTICLSCVSACPAGALQDNPDAPQLL---------FREDACLQCGICMATCPEKVI 576

Query: 119 VEGPNFEFAT 128
              P F  A 
Sbjct: 577 TLVPQFNLAD 586



 Score = 35.1 bits (79), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 11/52 (21%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           C  C  +CPA AI++                +ID   C  CG C   CP  A
Sbjct: 293 CSRCLDVCPAGAISVAGD-----------TVEIDPAICGGCGYCGAVCPSGA 333



 Score = 33.9 bits (76), Expect = 8.4,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 18/49 (36%)

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           A A  +              R DID   C  C  C  ACP  A+ + P+
Sbjct: 502 AGAQKVGDTAIPLPEGAPYGRVDIDTDNCTICLSCVSACPAGALQDNPD 550


>gi|78224539|ref|YP_386286.1| NADH dehydrogenase I subunit G [Geobacter metallireducens GS-15]
 gi|78195794|gb|ABB33561.1| NADH dehydrogenase I, G subunit, putative [Geobacter
           metallireducens GS-15]
          Length = 828

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 21/64 (32%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              RC+ C  C  IC                  +        + C +CG C   CPV A+
Sbjct: 143 DMNRCVHCGKCARICDEIVSFGAYTFINRGLEAKIGTEFDGPLNCEFCGSCVSVCPVGAL 202

Query: 119 VEGP 122
           V  P
Sbjct: 203 VSRP 206


>gi|16273571|ref|NP_439826.1| electron transport complex protein RnfB [Haemophilus influenzae Rd
           KW20]
 gi|68250288|ref|YP_249400.1| electron transport complex protein RnfB [Haemophilus influenzae
           86-028NP]
 gi|145629224|ref|ZP_01785023.1| electron transport complex protein RnfB [Haemophilus influenzae
           22.1-21]
 gi|145631464|ref|ZP_01787233.1| electron transport complex protein RnfB [Haemophilus influenzae
           R3021]
 gi|145633618|ref|ZP_01789345.1| electron transport complex protein RnfB [Haemophilus influenzae
           3655]
 gi|145635460|ref|ZP_01791161.1| electron transport complex protein RnfB [Haemophilus influenzae
           PittAA]
 gi|145639160|ref|ZP_01794767.1| electron transport complex protein RnfB [Haemophilus influenzae
           PittII]
 gi|148825772|ref|YP_001290525.1| electron transport complex protein RnfB [Haemophilus influenzae
           PittEE]
 gi|229845219|ref|ZP_04465352.1| electron transport complex protein RnfB [Haemophilus influenzae
           6P18H1]
 gi|229847305|ref|ZP_04467407.1| electron transport complex protein RnfB [Haemophilus influenzae
           7P49H1]
 gi|260581277|ref|ZP_05849095.1| iron-sulfur cluster binding protein [Haemophilus influenzae RdAW]
 gi|260582612|ref|ZP_05850401.1| electron transport complex protein RnfB [Haemophilus influenzae
           NT127]
 gi|319896879|ref|YP_004135074.1| electron transport complex protein rnfb [Haemophilus influenzae
           F3031]
 gi|329123233|ref|ZP_08251801.1| electron transport complex protein RnfB [Haemophilus aegyptius ATCC
           11116]
 gi|6136672|sp|P71396|RNFB_HAEIN RecName: Full=Electron transport complex protein rnfB
 gi|81335291|sp|Q4QJQ7|RNFB_HAEI8 RecName: Full=Electron transport complex protein rnfB
 gi|166225084|sp|A5UBJ1|RNFB_HAEIE RecName: Full=Electron transport complex protein rnfB
 gi|1574536|gb|AAC23330.1| iron-sulfur cluster binding protein [Haemophilus influenzae Rd
           KW20]
 gi|68058487|gb|AAX88740.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Haemophilus
           influenzae 86-028NP]
 gi|144978727|gb|EDJ88450.1| electron transport complex protein RnfB [Haemophilus influenzae
           22.1-21]
 gi|144982894|gb|EDJ90407.1| electron transport complex protein RnfB [Haemophilus influenzae
           R3021]
 gi|144985495|gb|EDJ92311.1| electron transport complex protein RnfB [Haemophilus influenzae
           3655]
 gi|145267334|gb|EDK07337.1| electron transport complex protein RnfB [Haemophilus influenzae
           PittAA]
 gi|145271722|gb|EDK11632.1| electron transport complex protein RnfB [Haemophilus influenzae
           PittII]
 gi|148715932|gb|ABQ98142.1| electron transport complex protein RnfB [Haemophilus influenzae
           PittEE]
 gi|229809730|gb|EEP45454.1| electron transport complex protein RnfB [Haemophilus influenzae
           7P49H1]
 gi|229811814|gb|EEP47510.1| electron transport complex protein RnfB [Haemophilus influenzae
           6P18H1]
 gi|260092104|gb|EEW76049.1| iron-sulfur cluster binding protein [Haemophilus influenzae RdAW]
 gi|260094284|gb|EEW78183.1| electron transport complex protein RnfB [Haemophilus influenzae
           NT127]
 gi|309750740|gb|ADO80724.1| Electron transport complex protein RnfB [Haemophilus influenzae
           R2866]
 gi|309972920|gb|ADO96121.1| Electron transport complex protein RnfB [Haemophilus influenzae
           R2846]
 gi|317432383|emb|CBY80738.1| Electron transport complex protein RnfB [Haemophilus influenzae
           F3031]
 gi|327471442|gb|EGF16890.1| electron transport complex protein RnfB [Haemophilus aegyptius ATCC
           11116]
          Length = 193

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 22/66 (33%), Gaps = 10/66 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C  C   CP  AI   +             + I    C  C LC   CP D
Sbjct: 104 FIDENMCIGCTKCIQACPVDAIIGTNK----------AMHTIIPDLCTGCELCVAPCPTD 153

Query: 117 AIVEGP 122
            I+  P
Sbjct: 154 CILMIP 159


>gi|319943295|ref|ZP_08017578.1| electron transport complex protein RnfB [Lautropia mirabilis ATCC
           51599]
 gi|319743837|gb|EFV96241.1| electron transport complex protein RnfB [Lautropia mirabilis ATCC
           51599]
          Length = 248

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 22/81 (27%), Gaps = 10/81 (12%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
             +                  CI C  C   CP  AI                ++ +   
Sbjct: 72  PLAADLEPMPVRHVVRIDPLHCIGCTKCILACPVDAIVGAP----------RFQHQVLTD 121

Query: 102 KCIYCGLCQEACPVDAIVEGP 122
           +C  C LC   CP D I   P
Sbjct: 122 RCTGCELCLPPCPTDCISLVP 142



 Score = 39.3 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 16/36 (44%), Positives = 17/36 (47%)

Query: 89  GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
                    ID + CI C  C  ACPVDAIV  P F
Sbjct: 79  PMPVRHVVRIDPLHCIGCTKCILACPVDAIVGAPRF 114


>gi|312881025|ref|ZP_07740825.1| Fe-S cluster domain protein [Aminomonas paucivorans DSM 12260]
 gi|310784316|gb|EFQ24714.1| Fe-S cluster domain protein [Aminomonas paucivorans DSM 12260]
          Length = 576

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 23/67 (34%), Gaps = 11/67 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
                 C  C  C   CP +AI +E G              +    C+ CGLC E CP  
Sbjct: 8   YTQTNNCHDCFKCLRQCPVKAIRLEEG-----------HARVLPELCVSCGLCVEVCPAK 56

Query: 117 AIVEGPN 123
           A     +
Sbjct: 57  AKCIRDD 63


>gi|292494172|ref|YP_003533315.1| formate dehydrogenase alpha subunit [Haloferax volcanii DS2]
 gi|291369344|gb|ADE01574.1| formate dehydrogenase alpha subunit [Haloferax volcanii DS2]
          Length = 1111

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 4/71 (5%)

Query: 57  PNGEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
                +CI C  C   C        + IE          ++    +    C+ CG C   
Sbjct: 207 QIDRNKCILCNRCVEGCNDVQVEGVLRIEGSGEDTRIGFQSDAETMADSDCVSCGHCATV 266

Query: 113 CPVDAIVEGPN 123
           CP  A+ E   
Sbjct: 267 CPTGALTEKDI 277


>gi|284161887|ref|YP_003400510.1| methyl-viologen-reducing hydrogenase subunit delta [Archaeoglobus
           profundus DSM 5631]
 gi|284011884|gb|ADB57837.1| methyl-viologen-reducing hydrogenase delta subunit [Archaeoglobus
           profundus DSM 5631]
          Length = 734

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 28/81 (34%), Gaps = 12/81 (14%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
                 +G+          E+C  C LC A+CP  AI  +              + ID  
Sbjct: 521 KVFEALKGKEMKYYSITDIEKCSKCGLCYAVCPHNAIEFDE------------VFKIDPA 568

Query: 102 KCIYCGLCQEACPVDAIVEGP 122
            C  CGLC   CP  AI    
Sbjct: 569 FCKGCGLCYATCPSRAIKLVN 589



 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 29/86 (33%), Gaps = 8/86 (9%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA-------ITIESGPRCHDGTRRTV 94
                FR +          ++C++C  C  +CP +        +T               
Sbjct: 214 KVDGNFRVKIEKAPQYIDPDKCVSCGKCSEVCPIEVPNPFDFGMTKRKAIDKDFRLAMPD 273

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVE 120
            Y+I    C  CG C + CP +AI  
Sbjct: 274 TYNIVEG-CNRCGECVKVCPTNAINL 298



 Score = 34.3 bits (77), Expect = 5.4,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 2/35 (5%)

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
            +     DI   KC  CGLC   CP +AI     F
Sbjct: 531 MKYYSITDI--EKCSKCGLCYAVCPHNAIEFDEVF 563


>gi|261867802|ref|YP_003255724.1| electron transport complex protein RnfB [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413134|gb|ACX82505.1| electron transport complex protein RnfB [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 196

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 19/64 (29%), Gaps = 10/64 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C  C   CP  AI   +             + I    C  C LC   CP  
Sbjct: 107 FIDENMCIGCTKCIQACPVDAIIGTNK----------SMHTIIPDLCTGCELCVAPCPTS 156

Query: 117 AIVE 120
            I  
Sbjct: 157 CISM 160



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/25 (52%), Positives = 15/25 (60%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           ID   CI C  C +ACPVDAI+   
Sbjct: 108 IDENMCIGCTKCIQACPVDAIIGTN 132


>gi|251773161|gb|EES53714.1| NADH dehydrogenase (quinone), chain G [Leptospirillum
           ferrodiazotrophum]
          Length = 878

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 22/74 (29%), Gaps = 3/74 (4%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
           P       L    N   RCI C  C  IC         G                 + C 
Sbjct: 131 PEDMKSEVLVFNSN---RCILCGKCVRICDEIQDVHAIGFINRGFDTIIGPPLGKKLDCE 187

Query: 105 YCGLCQEACPVDAI 118
           +CG C E CP  AI
Sbjct: 188 FCGDCLEVCPTGAI 201



 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/74 (17%), Positives = 20/74 (27%), Gaps = 8/74 (10%)

Query: 48  RGEHALRRYPNGEERCIAC---KLCEAICPAQAI-----TIESGPRCHDGTRRTVRYDID 99
           R  +      +    C  C     C     + A        ES         ++     +
Sbjct: 83  RKTNLELLLLHHPLDCPVCDCGGECPLQNMSFAYGGSDSRFESHRNDEPEDMKSEVLVFN 142

Query: 100 MIKCIYCGLCQEAC 113
             +CI CG C   C
Sbjct: 143 SNRCILCGKCVRIC 156


>gi|113867422|ref|YP_725911.1| benzoyl-CoA oxygenase component A [Ralstonia eutropha H16]
 gi|113526198|emb|CAJ92543.1| Benzoyl-CoA oxygenase component A [Ralstonia eutropha H16]
          Length = 416

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 11/67 (16%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            ++++    E CI C  CE  CP  AIT +              Y +    C  C  C  
Sbjct: 6   IIKQHLIDPEICIRCNTCEDTCPIDAITHDD-----------RNYVVRADVCNGCNACLS 54

Query: 112 ACPVDAI 118
            CP  AI
Sbjct: 55  PCPTGAI 61



 Score = 34.7 bits (78), Expect = 4.1,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           ID   CI C  C++ CP+DAI    
Sbjct: 12  IDPEICIRCNTCEDTCPIDAITHDD 36


>gi|91788667|ref|YP_549619.1| formate dehydrogenase subunit alpha [Polaromonas sp. JS666]
 gi|91697892|gb|ABE44721.1| NAD-dependent formate dehydrogenase iron-sulfur protein /
           NAD-dependent formate dehydrogenase catalytic subunit
           [Polaromonas sp. JS666]
          Length = 945

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 5/97 (5%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           +     + R + +        + CI C  C   C  +    +       G +  + +D+D
Sbjct: 133 RFEARQQVRQDLSHPAIAVNLDACIQCTRCLRACRDE-QVNDVIGLAFRGDQAKIVFDMD 191

Query: 100 ----MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
                  C+ CG C +ACP  A++       A   +Q
Sbjct: 192 DAMGASTCVACGECVQACPTGALMPAREAALAVPDKQ 228


>gi|47092036|ref|ZP_00229829.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria
           monocytogenes str. 4b H7858]
 gi|47019476|gb|EAL10216.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria
           monocytogenes str. 4b H7858]
          Length = 1124

 Score = 47.0 bits (110), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 33/104 (31%), Gaps = 16/104 (15%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCH 87
              T+   +   AL       E C  C  C  +CP  AI              E      
Sbjct: 578 PPGTAAYEKRGIALEVPEWISENCTMCNECAFVCPHAAIRPILTDEEEMESAPEGFMTRE 637

Query: 88  DGTRRTVRYDID--MIKCIYCGLCQEACPV--DAIVEGPNFEFA 127
              +  +RY I    + C  C LC E CP    A+V  P  E  
Sbjct: 638 MRGKDGLRYRIQVSPMDCTGCNLCAETCPAKDKALVMKPFEEVT 681



 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 5/80 (6%)

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV--EGPNFEFATETRQ 132
           + A    +      G    V   I    C  C  C   CP  AI        E   E+  
Sbjct: 574 SGAYPPGTAAYEKRGIALEVPEWI-SENCTMCNECAFVCPHAAIRPILTDEEEM--ESAP 630

Query: 133 ELYYDKERLLNNGDRWESEI 152
           E +  +E    +G R+  ++
Sbjct: 631 EGFMTREMRGKDGLRYRIQV 650


>gi|329298912|ref|ZP_08256248.1| electron transport complex, RnfABCDGE type subunit C [Plautia stali
           symbiont]
          Length = 648

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 35/107 (32%), Gaps = 18/107 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C  +CPA+ +  +       G+         +  CI CG C   CP  
Sbjct: 371 PQEEQSCIRCSACADVCPAK-LLPQQLYWYSLGSDHDKARAHHIDDCIECGACAYVCP-- 427

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
                 N       RQE    K  L         ++      ++  R
Sbjct: 428 -----SNIPLVQYYRQE----KAELRAI------DLEAKRTAEAKAR 459


>gi|325295254|ref|YP_004281768.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Desulfurobacterium thermolithotrophum DSM 11699]
 gi|325065702|gb|ADY73709.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Desulfurobacterium thermolithotrophum DSM 11699]
          Length = 97

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 32/92 (34%), Gaps = 10/92 (10%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E GS+     GE    R      +C+ C +C   C          P      +      I
Sbjct: 16  EPGSSEKYDTGEWRAWRPVFDSSKCVHCMMCWIFC----------PDSSILVKEEKMVGI 65

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
           D   C  CG+C   CP +A+   P + F  E 
Sbjct: 66  DYDHCKGCGICAHECPTNALEMKPEYLFREED 97


>gi|222530053|ref|YP_002573935.1| dihydroorotate dehydrogenase family protein [Caldicellulosiruptor
           bescii DSM 6725]
 gi|222456900|gb|ACM61162.1| dihydroorotate dehydrogenase family protein [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 381

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 12/62 (19%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +E+C +C  C  +C   AI  + G    +              C  CGLC E CP  AI
Sbjct: 326 DKEKCTSCGKCFTVCIYDAIEKDDGKFKVN------------QNCDGCGLCAELCPAKAI 373

Query: 119 VE 120
           + 
Sbjct: 374 LM 375


>gi|119719130|ref|YP_919625.1| putative ATPase RIL [Thermofilum pendens Hrk 5]
 gi|119524250|gb|ABL77622.1| ABC transporter related [Thermofilum pendens Hrk 5]
          Length = 601

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 24/78 (30%), Gaps = 1/78 (1%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +R        C     C   C        SG +C        +  I    C+ CG+C + 
Sbjct: 1   MRVAVIDRSLCRP-SKCNQECVKFCPINRSGSKCVWIDEVENKARISEELCVGCGICVKK 59

Query: 113 CPVDAIVEGPNFEFATET 130
           CP  AI      E   E 
Sbjct: 60  CPFSAISIVNLPEKLAED 77


>gi|94448908|emb|CAJ44289.1| ferredoxin hydrogenase [Heliobacillus mobilis]
          Length = 606

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 57  PNGEERCIACKLCEAIC---PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
            +   +CI C+ CE IC       +                  D+  + CI CG C  +C
Sbjct: 156 RHDPNKCIHCRRCENICAKVQENCVIAAQNRGFDTIIAPAFSRDMGDVDCIMCGQCVLSC 215

Query: 114 PVDAIVE 120
           PV A+ E
Sbjct: 216 PVGALTE 222


>gi|73540385|ref|YP_294905.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ralstonia eutropha JMP134]
 gi|72117798|gb|AAZ60061.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ralstonia eutropha JMP134]
          Length = 717

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 9/64 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C  C  C   CP QA+             R          C+ CGLC++ CP  AI
Sbjct: 582 DTASCTLCMACAGACPTQALRDNPERPVLGFLERN---------CVQCGLCEKTCPEHAI 632

Query: 119 VEGP 122
              P
Sbjct: 633 TLVP 636



 Score = 41.6 bits (96), Expect = 0.032,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 22/61 (36%), Gaps = 7/61 (11%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           +G  +   C  C  IC  QAI                R ++    C+ CG C   CP  A
Sbjct: 331 HGRNQTTGCTACIDICSTQAIR-------SQWHDGKGRIEVTPNLCMGCGACTTVCPSGA 383

Query: 118 I 118
           I
Sbjct: 384 I 384



 Score = 38.2 bits (87), Expect = 0.36,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
           ID+  C  C  C EACP +AI      + 
Sbjct: 211 IDLDLCTRCNACIEACPENAIDFSYQIDM 239


>gi|16082498|ref|NP_393676.1| Fe-S oxidoreductase [Thermoplasma acidophilum DSM 1728]
          Length = 670

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 28/86 (32%), Gaps = 15/86 (17%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVR-----------YDIDMIKCIYCGLCQE 111
           C  C  CE  CPA A      PR      +               +     C  C  C E
Sbjct: 298 CTDCGRCERACPAYASGTGLDPRAVVQNLKKTVGTETDLVPVILTENAAWSCTTCMACVE 357

Query: 112 ACPVDAIVEGPNFEFATETRQELYYD 137
            CPV        + F TETR+ L  +
Sbjct: 358 ECPV----LIRPYNFVTETRRNLVME 379


>gi|54023376|ref|YP_117618.1| putative ferredoxin reductase [Nocardia farcinica IFM 10152]
 gi|54014884|dbj|BAD56254.1| putative ferredoxin reductase [Nocardia farcinica IFM 10152]
          Length = 529

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 21/62 (33%), Gaps = 3/62 (4%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C +   C   CP   I                   +D   C+ CG C  ACPVDAI  
Sbjct: 7   QSCCSDASCVYACPVNCIHPTPDEPD---FLTAEMLYVDPQACVDCGACATACPVDAITS 63

Query: 121 GP 122
             
Sbjct: 64  SK 65


>gi|328951758|ref|YP_004369092.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfobacca acetoxidans DSM 11109]
 gi|328452082|gb|AEB07911.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfobacca acetoxidans DSM 11109]
          Length = 370

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 11/65 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E++C  C  C A C  +AI +E+               ID  KC+ C  C   CP   I
Sbjct: 194 NEKKCTGCGDCVAHCAQEAIRLEADKAV-----------IDPAKCVGCAECILVCPYGNI 242

Query: 119 VEGPN 123
               N
Sbjct: 243 EIQWN 247


>gi|325280075|ref|YP_004252617.1| electron transport complex, RnfABCDGE type, B subunit [Odoribacter
           splanchnicus DSM 20712]
 gi|324311884|gb|ADY32437.1| electron transport complex, RnfABCDGE type, B subunit [Odoribacter
           splanchnicus DSM 20712]
          Length = 330

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 28/86 (32%), Gaps = 11/86 (12%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P ++         +         +  CI C  C   CP  AIT+E+              
Sbjct: 195 PKDRRVFVSCVNKDKGGVARKACKAACIGCGKCAKECPFDAITVENNLAY---------- 244

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGP 122
            ID  KC  C  C   CP  AI E  
Sbjct: 245 -IDYSKCRLCRKCVGVCPTGAIHEVN 269



 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 8/81 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCH--------DGTRRTVRYDIDMIKCIYCGLCQ 110
            +++C+AC  C   CP   I + +             +  +  V        CI CG C 
Sbjct: 169 DDDKCVACGACVKACPRNIIELRNKGPKDRRVFVSCVNKDKGGVARKACKAACIGCGKCA 228

Query: 111 EACPVDAIVEGPNFEFATETR 131
           + CP DAI    N  +   ++
Sbjct: 229 KECPFDAITVENNLAYIDYSK 249



 Score = 40.9 bits (94), Expect = 0.061,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 9/60 (15%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+ C  C A CP  AI ++S               +D  KC+ CG C +ACP + I    
Sbjct: 142 CLGCGDCVAACPFDAIHMDSTTLLP---------VVDDDKCVACGACVKACPRNIIELRN 192


>gi|307129491|ref|YP_003881507.1| Pyruvate-flavodoxin oxidoreductase [Dickeya dadantii 3937]
 gi|306527020|gb|ADM96950.1| Pyruvate-flavodoxin oxidoreductase [Dickeya dadantii 3937]
          Length = 1177

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 30/127 (23%), Gaps = 26/127 (20%)

Query: 31  KTTINYPFEKGSTS--PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88
             +   P      S     +   A        + C  C  C A CP  AI  +  P    
Sbjct: 655 PVSALPPDGTWPVSTTQWEKRNIAEEIPLWKPDLCTQCNHCVAACPHSAIRAKVVPADAM 714

Query: 89  ----------------GTRRTVRYDIDMIKCIYCGLCQEACPV--------DAIVEGPNF 124
                              +     +    C  C LC E CP          AI   P  
Sbjct: 715 AGAPESLQSLDVKARDMRGQKYVLQVAPEDCTGCNLCVEVCPAKDRQNPEIKAINMEPRL 774

Query: 125 EFATETR 131
           +     +
Sbjct: 775 DHVATEK 781


>gi|294101124|ref|YP_003552982.1| electron transport complex, RnfABCDGE type, B subunit
           [Aminobacterium colombiense DSM 12261]
 gi|293616104|gb|ADE56258.1| electron transport complex, RnfABCDGE type, B subunit
           [Aminobacterium colombiense DSM 12261]
          Length = 266

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQEAC 113
            E  C  C  C A CP   IT+    +      +   +     +I  + CI CGLC + C
Sbjct: 168 DESLCTGCGACVAACPRDVITLIPADQAMRVLCNSTKKGAGVKNICAVGCIGCGLCAKLC 227

Query: 114 PVDAIVEGPN 123
           P  AI    N
Sbjct: 228 PSQAITMKDN 237



 Score = 41.6 bits (96), Expect = 0.037,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 11/56 (19%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           CI C LC  +CP+QAIT+           +     I+   C  C +C   CP  AI
Sbjct: 217 CIGCGLCAKLCPSQAITM-----------KDNLPVINPDLCTGCKICAMKCPARAI 261



 Score = 37.8 bits (86), Expect = 0.45,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 11/64 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +  C+    C   C   AI++E G              +D   C  CG C  ACP D I
Sbjct: 139 CKNGCLGFGSCVTACAFDAISVEDGVAV-----------VDESLCTGCGACVAACPRDVI 187

Query: 119 VEGP 122
              P
Sbjct: 188 TLIP 191


>gi|294646919|ref|ZP_06724540.1| protein HymB [Bacteroides ovatus SD CC 2a]
 gi|292637864|gb|EFF56261.1| protein HymB [Bacteroides ovatus SD CC 2a]
          Length = 489

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 10/66 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L  Y    ERCI C LC   CPA AI+                + I   KCI CG+C   
Sbjct: 431 LLTYTISPERCIGCHLCAKNCPADAISGL----------VRKPHVIAPDKCIKCGMCMAR 480

Query: 113 CPVDAI 118
           C  +AI
Sbjct: 481 CKFNAI 486


>gi|317133605|ref|YP_004092919.1| hydrogenase large subunit domain protein [Ethanoligenens harbinense
           YUAN-3]
 gi|315471584|gb|ADU28188.1| hydrogenase large subunit domain protein [Ethanoligenens harbinense
           YUAN-3]
          Length = 482

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 6/66 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112
             E+C  C  C   CP  AI     P       + +  D      I+  +C  CG C   
Sbjct: 123 DPEKCRECGRCMKACPYHAIIERQRPCVAGCAAKAIEIDDQKKAKINYDRCTSCGNCVYQ 182

Query: 113 CPVDAI 118
           CP  A+
Sbjct: 183 CPFGAM 188



 Score = 40.1 bits (92), Expect = 0.10,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 13/60 (21%)

Query: 63  CIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           C  C    C A CP  AI+ E                ID  KC  CG C +ACP  AI+E
Sbjct: 96  CRGCIAHKCHAACPFGAISYEKHRAV-----------IDPEKCRECGRCMKACPYHAIIE 144


>gi|229826589|ref|ZP_04452658.1| hypothetical protein GCWU000182_01964 [Abiotrophia defectiva ATCC
           49176]
 gi|229789459|gb|EEP25573.1| hypothetical protein GCWU000182_01964 [Abiotrophia defectiva ATCC
           49176]
          Length = 594

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 31/97 (31%), Gaps = 7/97 (7%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA---ITIESGPRCHD 88
            T     E+       +    +R      ++CI C  C  +C   A   I    G     
Sbjct: 118 ITDTLYEERLEIQEWDKTFPLIR----DSKKCIKCMRCVQVCDKIAGLGIWTLEGTGARS 173

Query: 89  GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
               +    I    C  CG C   CPV A+ E  + E
Sbjct: 174 TINVSGARTIAEADCSLCGQCITHCPVGALKERDDTE 210


>gi|206601553|gb|EDZ38036.1| Glutamate synthase, small subunit [Leptospirillum sp. Group II
           '5-way CG']
          Length = 613

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 27/100 (27%), Gaps = 27/100 (27%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIES------------------------- 82
           R            E+CI C  C  +CP  A+ +                           
Sbjct: 502 RCLTCHVNPIFEGEKCIMCGGCVDVCPEYALKMIPLSDVDLDQESTAKVVESFLGVELSK 561

Query: 83  -GPRCHDGTRRTVRYDIDM-IKCIYCGLCQEACPVDAIVE 120
                 D         I    +CI CGLC + CP  AI  
Sbjct: 562 REEVGVDQNLDHSTAMIWEGSRCIRCGLCAKRCPTGAISM 601



 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 17/42 (40%)

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           E+  +        V    +  KCI CG C + CP  A+   P
Sbjct: 495 EAREQASRCLTCHVNPIFEGEKCIMCGGCVDVCPEYALKMIP 536


>gi|207725274|ref|YP_002255670.1| ferredoxin [4fe-4s] protein [Ralstonia solanacearum MolK2]
 gi|206590508|emb|CAQ37470.1| ferredoxin [4fe-4s] protein [Ralstonia solanacearum MolK2]
          Length = 265

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 22/64 (34%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E CI C LC   CP  AI                 + +    C  C LC   CPVD I
Sbjct: 83  DPEHCIGCTLCIQACPVDAIVGAPK----------AMHVVLADWCTGCDLCVAPCPVDCI 132

Query: 119 VEGP 122
              P
Sbjct: 133 DMVP 136



 Score = 38.5 bits (88), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/21 (66%), Positives = 15/21 (71%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C LC +ACPVDAI
Sbjct: 82  IDPEHCIGCTLCIQACPVDAI 102


>gi|254430998|ref|ZP_05044701.1| NAD-dependent formate dehydrogenase alpha subunit [Cyanobium sp.
           PCC 7001]
 gi|197625451|gb|EDY38010.1| NAD-dependent formate dehydrogenase alpha subunit [Cyanobium sp.
           PCC 7001]
          Length = 196

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 4/87 (4%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDI 98
               P+ R + +  ++     RCI C  C  +C     A   +   R  D +        
Sbjct: 83  PYQYPQRRVDASHPQFAIDHHRCILCTRCVRVCDEIEGAHVWDVANRGADCSIIAGLDQP 142

Query: 99  DMI--KCIYCGLCQEACPVDAIVEGPN 123
                 C  CG C + CP  AI    +
Sbjct: 143 WGEVAACTSCGKCVDVCPTGAIFRKDD 169



 Score = 34.3 bits (77), Expect = 6.1,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 8/81 (9%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIAC---KLCEAICPAQAITIESGPRCHDGTRR----- 92
                 +R       +  G   C  C     CE    A A+ ++     +   +R     
Sbjct: 35  TPQLQEWRRMAVELFFAEGNHVCAFCVANGACELQDVAVAVGMDHSRFPYQYPQRRVDAS 94

Query: 93  TVRYDIDMIKCIYCGLCQEAC 113
             ++ ID  +CI C  C   C
Sbjct: 95  HPQFAIDHHRCILCTRCVRVC 115


>gi|154498692|ref|ZP_02037070.1| hypothetical protein BACCAP_02683 [Bacteroides capillosus ATCC
           29799]
 gi|150272431|gb|EDM99625.1| hypothetical protein BACCAP_02683 [Bacteroides capillosus ATCC
           29799]
          Length = 73

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 27/71 (38%), Gaps = 11/71 (15%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
                       C++C  CE  CP  AI+                Y ID   CI CG C 
Sbjct: 14  EVFPMAYVIGNDCVSCGSCEGACPVSAISQGDE-----------HYVIDADTCIDCGTCA 62

Query: 111 EACPVDAIVEG 121
           E CPV AI +G
Sbjct: 63  ETCPVGAIAQG 73



 Score = 34.7 bits (78), Expect = 4.2,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 101 IKCIYCGLCQEACPVDAIVEGPNF 124
             C+ CG C+ ACPV AI +G   
Sbjct: 24  NDCVSCGSCEGACPVSAISQGDEH 47


>gi|110801221|ref|YP_695581.1| nitroreductase family protein [Clostridium perfringens ATCC 13124]
 gi|110675868|gb|ABG84855.1| nitroreductase family protein [Clostridium perfringens ATCC 13124]
          Length = 272

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 15/91 (16%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                  +CI C LC   C    I +  G              I    C+ CG C   CP
Sbjct: 1   MMNVDTSKCIGCTLCMQDCIVSDIEMLDGKAH-----------IKNESCMECGHCIAICP 49

Query: 115 VDAIVEGPNFEFA---TETRQELYYDKERLL 142
            +A+ +  +++ +      +     D +RLL
Sbjct: 50  KEAVSDS-DYDMSKIQEYNKDSFDIDSDRLL 79


>gi|262393721|ref|YP_003285575.1| electron transport complex protein RnfB [Vibrio sp. Ex25]
 gi|262337315|gb|ACY51110.1| electron transport complex protein RnfB [Vibrio sp. Ex25]
          Length = 198

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 25/84 (29%), Gaps = 10/84 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
            +   S               E+ CI C  C   CP  AI   +             + +
Sbjct: 90  VEPEESAHDLDNKIPTVAFIHEDMCIGCTKCIQACPVDAIVGGTK----------AVHTV 139

Query: 99  DMIKCIYCGLCQEACPVDAIVEGP 122
              +C  C LC   CP D I   P
Sbjct: 140 IKDECTGCDLCVAPCPTDCIEMIP 163


>gi|325829944|ref|ZP_08163402.1| pyruvate synthase [Eggerthella sp. HGA1]
 gi|325488111|gb|EGC90548.1| pyruvate synthase [Eggerthella sp. HGA1]
          Length = 1180

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 29/99 (29%), Gaps = 17/99 (17%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
           FE+G+ +   RG             CI C  C   CP   I   +               
Sbjct: 673 FEQGAAAYEKRGVAVSVPAW-DAATCIQCNQCAFACPHATIRPFALTEEEAAAAPAATVM 731

Query: 98  ----------------IDMIKCIYCGLCQEACPVDAIVE 120
                           I  + C+ CG+C   CP D++  
Sbjct: 732 VPAKGKAAAGLQYTLAISPLDCMGCGVCVNVCPSDSLAM 770


>gi|322615214|gb|EFY12136.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322617805|gb|EFY14701.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322624602|gb|EFY21433.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322626948|gb|EFY23744.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322634134|gb|EFY30870.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322635675|gb|EFY32385.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322640190|gb|EFY36854.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322646387|gb|EFY42899.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322649354|gb|EFY45790.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322656475|gb|EFY52764.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322665661|gb|EFY61845.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322667185|gb|EFY63352.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322671191|gb|EFY67319.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322675169|gb|EFY71246.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322680777|gb|EFY76812.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322686952|gb|EFY82929.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|323192716|gb|EFZ77943.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323198852|gb|EFZ83951.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323205138|gb|EFZ90116.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323208181|gb|EFZ93125.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323213535|gb|EFZ98326.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323215794|gb|EGA00537.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323221293|gb|EGA05716.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323223841|gb|EGA08144.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323231240|gb|EGA15355.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323233674|gb|EGA17766.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323237744|gb|EGA21804.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323245727|gb|EGA29721.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323246535|gb|EGA30514.1| dihydropyrimidine dehydrogenase subunit B [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323253020|gb|EGA36853.1| dihydropyrimidine dehydrogenase subunit B [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323254772|gb|EGA38575.1| dihydropyrimidine dehydrogenase subunit B [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323259528|gb|EGA43163.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323268311|gb|EGA51786.1| dihydropyrimidine dehydrogenase subunit B [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
          Length = 411

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +      +E+C+ C  C   C         G +  +    +     +  K
Sbjct: 324 IPAEELDRSYIVYPRINQEKCVGCGRCYISCYDG------GHQAMEWDEHSRTPHCNTEK 377

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 378 CVGCLLCGHVCPVACIDLG 396


>gi|317489895|ref|ZP_07948387.1| ferredoxin oxidoreductase [Eggerthella sp. 1_3_56FAA]
 gi|316910893|gb|EFV32510.1| ferredoxin oxidoreductase [Eggerthella sp. 1_3_56FAA]
          Length = 1180

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 29/99 (29%), Gaps = 17/99 (17%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
           FE+G+ +   RG             CI C  C   CP   I   +               
Sbjct: 673 FEQGAAAYEKRGVAVSVPAW-DAATCIQCNQCAFACPHATIRPFALTEEEAAAAPAATVM 731

Query: 98  ----------------IDMIKCIYCGLCQEACPVDAIVE 120
                           I  + C+ CG+C   CP D++  
Sbjct: 732 VPAKGKAAAGLQYTLAISPLDCMGCGVCVNVCPSDSLAM 770


>gi|315925657|ref|ZP_07921867.1| pyruvate-ferredoxin oxidoreductase [Pseudoramibacter alactolyticus
           ATCC 23263]
 gi|315621198|gb|EFV01169.1| pyruvate-ferredoxin oxidoreductase [Pseudoramibacter alactolyticus
           ATCC 23263]
          Length = 1170

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 20/74 (27%), Gaps = 16/74 (21%)

Query: 57  PNGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTVRYDIDM 100
                +CI C  C  +CP  AI                         + +    R  +  
Sbjct: 685 EWDLTKCIQCNHCSLVCPHAAIRPILLDEAEAEAAPAGFETKKATGKNMSSYQFRIQVSP 744

Query: 101 IKCIYCGLCQEACP 114
             C  CG C   CP
Sbjct: 745 YDCTGCGSCVNVCP 758


>gi|308271190|emb|CBX27799.1| hypothetical protein N47_C18570 [uncultured Desulfobacterium sp.]
          Length = 368

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 37/107 (34%), Gaps = 21/107 (19%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           +  F   ++       +                +H++      +++CI C  C + C  Q
Sbjct: 159 LSGFGGTIKNLGMGCASRR----------GKMAQHSMVSPGITKKKCIGCGDCISHCSQQ 208

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           AI++ +               ID  KCI CG C   C  +AI    N
Sbjct: 209 AISLVNEKAV-----------IDSTKCIGCGECILICVNEAIQIKWN 244


>gi|301063630|ref|ZP_07204144.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300442278|gb|EFK06529.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 633

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 15/97 (15%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
             ++Y F+ +   +   +K            L  Y   E+ C  C LC   CP +AIT E
Sbjct: 549 TTIKY-FREEYEAHIRDKKCPAGVCKP----LFHYEISEDACTGCTLCARKCPQEAITGE 603

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                         + +D  KCI CG+C + C   A+
Sbjct: 604 KKEP----------HVLDQEKCIKCGICYDVCKFGAV 630



 Score = 40.5 bits (93), Expect = 0.087,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 8/62 (12%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
            I          +    Y+I    C  C LC   CP +AI          E ++    D+
Sbjct: 561 HIRDKKCPAGVCKPLFHYEISEDACTGCTLCARKCPQEAI--------TGEKKEPHVLDQ 612

Query: 139 ER 140
           E+
Sbjct: 613 EK 614


>gi|300120001|emb|CBK19555.2| Pyruvate:Ferredoxin (flavodoxin) Oxidoreductase (PFO) [Blastocystis
           hominis]
 gi|300122629|emb|CBK23197.2| Pyruvate:Ferredoxin (flavodoxin) Oxidoreductase (PFO) [Blastocystis
           hominis]
          Length = 1223

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/106 (14%), Positives = 29/106 (27%), Gaps = 28/106 (26%)

Query: 58  NGEERCIACKLCEAICPAQA-----ITIESGPRCHDGTRRTV-----------RYDIDMI 101
               +C  C  C  +C         +  E   R  +  +              R  +  +
Sbjct: 718 WDPSKCTQCNQCATLCTHVCIRPFLMDAEESKRAPETFKMIPAVGDELKGLNYRIQVSPM 777

Query: 102 KCIYCGLCQEACPVDAIVEGP------------NFEFATETRQELY 135
            C  C +C   CP +A+                +F    + + +L 
Sbjct: 778 DCTSCEVCSVNCPTNALTMTNFRDVQEVESKNWDFAMTVKNKGDLV 823


>gi|218885697|ref|YP_002435018.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218756651|gb|ACL07550.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 445

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 10/59 (16%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++C+ C+ C   C   AIT     +            I+   C+ CG C   C  DAI
Sbjct: 246 HDKCVGCRTCARYCNQDAITFNEEQKAS----------INHELCVGCGRCIATCNFDAI 294


>gi|119473031|ref|ZP_01614853.1| electron transport complex protein RnfB [Alteromonadales bacterium
           TW-7]
 gi|119444609|gb|EAW25921.1| electron transport complex protein RnfB [Alteromonadales bacterium
           TW-7]
          Length = 184

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 10/69 (14%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E+ CI C  C   CP  AI   +             + + + +C  C LC E CPVD
Sbjct: 108 YIREDECIGCTKCIQACPVDAIVGAT----------RQMHTVLIDECTGCDLCVEPCPVD 157

Query: 117 AIVEGPNFE 125
            I   P  E
Sbjct: 158 CIDMLPVAE 166


>gi|126178573|ref|YP_001046538.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanoculleus marisnigri JR1]
 gi|125861367|gb|ABN56556.1| CoB--CoM heterodisulfide reductase subunit A [Methanoculleus
           marisnigri JR1]
          Length = 672

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 29/80 (36%), Gaps = 9/80 (11%)

Query: 45  PRFRGEHALRRYP--NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           P  RGE  L  Y     E++C  C LC   CP  A+++                 +   K
Sbjct: 581 PIHRGEVELEPYFAVCLEDKCAGCGLCVNQCPYSALSLVEKD-------GRTVMQVTEAK 633

Query: 103 CIYCGLCQEACPVDAIVEGP 122
           C  CG C   CP  AI    
Sbjct: 634 CKGCGTCGGFCPGGAIWMQH 653


>gi|323702552|ref|ZP_08114215.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
 gi|323532526|gb|EGB22402.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574]
          Length = 649

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 31/67 (46%), Gaps = 10/67 (14%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           AL  Y    E+C  C LC   CP QAI  E          +   + ID  KCI CG CQ 
Sbjct: 590 ALVNYRIDGEKCRGCGLCLKNCPVQAIRGE----------KKSPHTIDNEKCIKCGACQT 639

Query: 112 ACPVDAI 118
           +C  +A+
Sbjct: 640 SCKFNAV 646



 Score = 38.5 bits (88), Expect = 0.32,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 17/40 (42%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            I             V Y ID  KC  CGLC + CPV AI
Sbjct: 577 HIVDKHCPAGVCSALVNYRIDGEKCRGCGLCLKNCPVQAI 616


>gi|323484742|ref|ZP_08090101.1| hypothetical protein HMPREF9474_01852 [Clostridium symbiosum
           WAL-14163]
 gi|323401979|gb|EGA94318.1| hypothetical protein HMPREF9474_01852 [Clostridium symbiosum
           WAL-14163]
          Length = 1176

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 24/80 (30%), Gaps = 14/80 (17%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITI----ESGPRCHDGTR---------RTV 94
           RG        N  + CI C  C  +CP   I      E      +G +            
Sbjct: 680 RGIAVNVPVWN-PDNCIQCNFCSYVCPHAVIRPVALTEEEAAGAEGMKTLPMTGMPQYKF 738

Query: 95  RYDIDMIKCIYCGLCQEACP 114
              I  + C  CG C   CP
Sbjct: 739 AMTISALDCTGCGSCANVCP 758


>gi|302387721|ref|YP_003823543.1| NADH dehydrogenase (quinone) [Clostridium saccharolyticum WM1]
 gi|302198349|gb|ADL05920.1| NADH dehydrogenase (quinone) [Clostridium saccharolyticum WM1]
          Length = 595

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 37/97 (38%), Gaps = 15/97 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            L+ FF+ +   +   +            AL  Y    E+C  C LC   CP  AI+   
Sbjct: 512 TLK-FFRDEYNAHIVDKTCPAGVC----KALLSYYIDAEKCKGCTLCARNCPVNAISGS- 565

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
                        + ID  KCI CG+C E C  DA+ 
Sbjct: 566 ---------VKNPHVIDPEKCIKCGVCMEKCKFDAVY 593


>gi|225414543|ref|ZP_03761732.1| hypothetical protein CLOSTASPAR_05766 [Clostridium asparagiforme
           DSM 15981]
 gi|225041922|gb|EEG52168.1| hypothetical protein CLOSTASPAR_05766 [Clostridium asparagiforme
           DSM 15981]
          Length = 367

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 11/60 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +E C+ C  C+  C   AITIE                ID+ KC+ CG C  ACP+DA+
Sbjct: 192 NQELCVGCGSCKKNCAHGAITIEDRKAS-----------IDVSKCVGCGRCIGACPLDAV 240


>gi|77176878|gb|ABA64543.1| reductive dehalogenase protein [Dehalococcoides sp. KB1]
          Length = 479

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 3/74 (4%)

Query: 56  YPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
                + C  C +C   CP  AI         R        + +  D+  C +C +CQ  
Sbjct: 359 DFGARKFCETCGICADSCPQGAIQQGEATWDARYAWENSGXLGWRNDLTLCNHCPVCQGV 418

Query: 113 CPVDAIVEGPNFEF 126
           CP +A  +    E 
Sbjct: 419 CPFNAFDKSGXHEI 432


>gi|157834237|pdb|1XER|A Chain A, Structure Of Ferredoxin
          Length = 103

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 25/84 (29%), Gaps = 2/84 (2%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
             G   P               + CIA   C   CP         P      ++     +
Sbjct: 21  VYGPVEPPXVLGIHGTIVGVDFDLCIADGSCINACPVNVFQWYDTPGHPASEKKADP--V 78

Query: 99  DMIKCIYCGLCQEACPVDAIVEGP 122
           +   CI+C  C   CPV AI   P
Sbjct: 79  NEQACIFCMACVNVCPVAAIDVKP 102


>gi|150389448|ref|YP_001319497.1| indolepyruvate ferredoxin oxidoreductase [Alkaliphilus
           metalliredigens QYMF]
 gi|149949310|gb|ABR47838.1| Indolepyruvate ferredoxin oxidoreductase [Alkaliphilus
           metalliredigens QYMF]
          Length = 595

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 6/64 (9%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            +      CI C+ C          I           ++    ID   C+ C +C + CP
Sbjct: 532 HFYVDPSICIGCRSC---VNTNCPPIRMKEYKDYDKLKSS---IDANMCVGCSICAQVCP 585

Query: 115 VDAI 118
           V+AI
Sbjct: 586 VNAI 589


>gi|331092597|ref|ZP_08341416.1| hypothetical protein HMPREF9477_02059 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330400608|gb|EGG80222.1| hypothetical protein HMPREF9477_02059 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 580

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 36/107 (33%), Gaps = 4/107 (3%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93
           I+ PF++      +  +  L R      +C+ C           +              +
Sbjct: 119 IDIPFKQRLEKMAWNKDFPLIRDSAKCIKCMRCVQVCDKVQNLHVWDLESTGSRTTVHVS 178

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140
               I+   C  CG C   CPV A+ E  + + A E       DK++
Sbjct: 179 KNRKIEEADCSLCGQCITHCPVGALRERDDTDKAWEA----IADKDK 221


>gi|327309967|ref|YP_004336864.1| Iron-sulfur protein [Thermoproteus uzoniensis 768-20]
 gi|326946446|gb|AEA11552.1| Iron-sulfur protein [Thermoproteus uzoniensis 768-20]
          Length = 441

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 9/90 (10%)

Query: 48  RGEHALRRYPNG--EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           R   AL+ Y       +C  C +C A CP +A  +             ++  ++ +KC+ 
Sbjct: 296 RKTQALKMYRVDVDPSKCSLCGVCFAKCPQRAFDVSRTGDA-------IKLTLNPLKCVG 348

Query: 106 CGLCQEACPVDAIVEGPNFEFATETRQELY 135
           CG C+E CP  AI  G +     E  ++  
Sbjct: 349 CGYCEEVCPEKAIAVGRHDSLPPEVEEKAV 378



 Score = 35.5 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 11/53 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C  +CP  A+ +                 +D  KC  CGLC  +CP  A+
Sbjct: 116 CSECVDVCPTGALKLADRSVS-----------VDPSKCTECGLCISSCPTGAL 157


>gi|308272512|emb|CBX29116.1| hypothetical protein N47_J00970 [uncultured Desulfobacterium sp.]
          Length = 822

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 10/60 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            + +C  C  C  ICP  A+TI    +            I    C  CG+C   CP +AI
Sbjct: 637 DKNKCARCLTCYRICPHNAVTIRDNYQPV----------ISTDACFGCGICVSHCPANAI 686


>gi|297578621|ref|ZP_06940549.1| electron transport complex protein RnfC [Vibrio cholerae RC385]
 gi|297536215|gb|EFH75048.1| electron transport complex protein RnfC [Vibrio cholerae RC385]
          Length = 862

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 29/109 (26%), Gaps = 20/109 (18%)

Query: 13  LKEFVGA---FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69
           L   +         L +          P  K +        + L    N    CI C  C
Sbjct: 333 LPRLIMGGPMMGFTLPH-------AQVPITKTANCILAPTRNELTSSDNEMA-CIRCGQC 384

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMI----KCIYCGLCQEACP 114
              CP   +     P+      +   +D         CI CG C   CP
Sbjct: 385 AEACPVSLL-----PQQLQWHAKAEEFDKCEELNLKDCIECGACAYVCP 428



 Score = 36.2 bits (82), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/13 (76%), Positives = 10/13 (76%)

Query: 103 CIYCGLCQEACPV 115
           CI CG C EACPV
Sbjct: 378 CIRCGQCAEACPV 390


>gi|262191542|ref|ZP_06049725.1| electron transport complex protein RnfC [Vibrio cholerae CT
           5369-93]
 gi|262032596|gb|EEY51151.1| electron transport complex protein RnfC [Vibrio cholerae CT
           5369-93]
          Length = 814

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 29/109 (26%), Gaps = 20/109 (18%)

Query: 13  LKEFVGA---FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69
           L   +         L +          P  K +        + L    N    CI C  C
Sbjct: 333 LPRLIMGGPMMGFTLPH-------AQVPITKTANCILAPTRNELTSSDNEMA-CIRCGQC 384

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMI----KCIYCGLCQEACP 114
              CP   +     P+      +   +D         CI CG C   CP
Sbjct: 385 AEACPVSLL-----PQQLQWHAKAEEFDKCEELNLKDCIECGACAYVCP 428



 Score = 36.2 bits (82), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/13 (76%), Positives = 10/13 (76%)

Query: 103 CIYCGLCQEACPV 115
           CI CG C EACPV
Sbjct: 378 CIRCGQCAEACPV 390


>gi|229586000|ref|YP_002844502.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus M.16.27]
 gi|238620985|ref|YP_002915811.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus M.16.4]
 gi|228021050|gb|ACP56457.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus M.16.27]
 gi|238382055|gb|ACR43143.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus M.16.4]
          Length = 94

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 25/75 (33%), Gaps = 11/75 (14%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G   + +       CI CK C   CP   I   +G              +D   C  CG+
Sbjct: 30  GAWRIVKPVVDYNNCIGCKACFMFCPESTIVPSNGKV-----------RVDYEYCKGCGV 78

Query: 109 CQEACPVDAIVEGPN 123
           C   CPV AI     
Sbjct: 79  CANVCPVKAISMVNE 93


>gi|239626612|ref|ZP_04669643.1| 4Fe-4S ferredoxin [Clostridiales bacterium 1_7_47_FAA]
 gi|239516758|gb|EEQ56624.1| 4Fe-4S ferredoxin [Clostridiales bacterium 1_7_47FAA]
          Length = 367

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 11/62 (17%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               + C+ C  C+  C   AITI                 ID+ KC+ CG C  ACPVD
Sbjct: 190 YVHTDMCVGCGSCQKNCAHSAITITDRKAS-----------IDVKKCVGCGRCIGACPVD 238

Query: 117 AI 118
           A+
Sbjct: 239 AV 240


>gi|239616590|ref|YP_002939912.1| NADH dehydrogenase (quinone) [Kosmotoga olearia TBF 19.5.1]
 gi|239505421|gb|ACR78908.1| NADH dehydrogenase (quinone) [Kosmotoga olearia TBF 19.5.1]
          Length = 599

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 33/96 (34%), Gaps = 15/96 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            +RYF            K    P  R    L R    EE+C+ C  C  +CP   I  + 
Sbjct: 514 TMRYF----WDEYIAHVKEKRCPAKRC-KELTRVVIDEEKCVGCTACARVCPVNGIIGDI 568

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                        + ID   C  CG C E C  DAI
Sbjct: 569 RKP----------HRIDPEICTRCGSCIEVCRFDAI 594


>gi|222529179|ref|YP_002573061.1| nitrite and sulphite reductase 4Fe-4S region [Caldicellulosiruptor
           bescii DSM 6725]
 gi|222456026|gb|ACM60288.1| nitrite and sulphite reductase 4Fe-4S region [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 289

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 9/76 (11%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G     +    +  C  C LC+A+CP +AI I+          +     ID  KC YCG 
Sbjct: 152 GIKGAVKPEWEKNSCTFCGLCQAVCPTKAIQIDE---------KNKEITIDRDKCTYCGR 202

Query: 109 CQEACPVDAIVEGPNF 124
           C ++CP ++    P +
Sbjct: 203 CVKSCPTNSSKGKPGY 218



 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 10/68 (14%)

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           C    +  E       G  +      +   C +CGLCQ  CP  AI          E  +
Sbjct: 139 CGNNCLKAEENDLGIKGAVKPEW---EKNSCTFCGLCQAVCPTKAIQI-------DEKNK 188

Query: 133 ELYYDKER 140
           E+  D+++
Sbjct: 189 EITIDRDK 196


>gi|194288744|ref|YP_002004651.1| NAD-dependent formate dehydrogenase subunit alpha [Cupriavidus
           taiwanensis LMG 19424]
 gi|193222579|emb|CAQ68582.1| NAD-dependent formate dehydrogenase alpha subunit [Cupriavidus
           taiwanensis LMG 19424]
          Length = 959

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 25/91 (27%), Gaps = 4/91 (4%)

Query: 37  PFEKGSTSPRFRGEHALRRYP-NGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRR 92
           P  K   +     +     Y      +CI C  C   C     T     SG         
Sbjct: 146 PDAKPIATHTQMKKDESNPYFTYDPSKCIVCNRCVRACEETQGTFALTISGRGFDSRVSP 205

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                     C+ CG C +ACP   + E   
Sbjct: 206 GTSQPFMESDCVSCGACVQACPTATLTETSI 236


>gi|254291762|ref|ZP_04962548.1| RnfC-related protein [Vibrio cholerae AM-19226]
 gi|150422355|gb|EDN14316.1| RnfC-related protein [Vibrio cholerae AM-19226]
          Length = 854

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 29/109 (26%), Gaps = 20/109 (18%)

Query: 13  LKEFVGA---FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69
           L   +         L +          P  K +        + L    N    CI C  C
Sbjct: 333 LPRLIMGGPMMGFTLPH-------AQVPITKTANCILAPTRNELTSSDNEMA-CIRCGQC 384

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMI----KCIYCGLCQEACP 114
              CP   +     P+      +   +D         CI CG C   CP
Sbjct: 385 AEACPVSLL-----PQQLQWHAKAEEFDKCEELNLKDCIECGACAYVCP 428



 Score = 36.2 bits (82), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/13 (76%), Positives = 10/13 (76%)

Query: 103 CIYCGLCQEACPV 115
           CI CG C EACPV
Sbjct: 378 CIRCGQCAEACPV 390


>gi|153824972|ref|ZP_01977639.1| RnfC-related protein [Vibrio cholerae MZO-2]
 gi|149741484|gb|EDM55514.1| RnfC-related protein [Vibrio cholerae MZO-2]
          Length = 853

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 29/109 (26%), Gaps = 20/109 (18%)

Query: 13  LKEFVGA---FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69
           L   +         L +          P  K +        + L    N    CI C  C
Sbjct: 333 LPRLIMGGPMMGFTLPH-------AQVPITKTANCILAPTRNELTSSDNEMA-CIRCGQC 384

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMI----KCIYCGLCQEACP 114
              CP   +     P+      +   +D         CI CG C   CP
Sbjct: 385 AEACPVSLL-----PQQLQWHAKAEEFDKCEELNLKDCIECGACAYVCP 428



 Score = 36.2 bits (82), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/13 (76%), Positives = 10/13 (76%)

Query: 103 CIYCGLCQEACPV 115
           CI CG C EACPV
Sbjct: 378 CIRCGQCAEACPV 390


>gi|153829524|ref|ZP_01982191.1| electron transport complex protein RnfC [Vibrio cholerae 623-39]
 gi|148874984|gb|EDL73119.1| electron transport complex protein RnfC [Vibrio cholerae 623-39]
          Length = 853

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 29/109 (26%), Gaps = 20/109 (18%)

Query: 13  LKEFVGA---FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69
           L   +         L +          P  K +        + L    N    CI C  C
Sbjct: 333 LPRLIMGGPMMGFTLPH-------AQVPITKTANCILAPTRNELTSSDNEMA-CIRCGQC 384

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMI----KCIYCGLCQEACP 114
              CP   +     P+      +   +D         CI CG C   CP
Sbjct: 385 AEACPVSLL-----PQQLQWHAKAEEFDKCEELNLKDCIECGACAYVCP 428



 Score = 36.2 bits (82), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/13 (76%), Positives = 10/13 (76%)

Query: 103 CIYCGLCQEACPV 115
           CI CG C EACPV
Sbjct: 378 CIRCGQCAEACPV 390


>gi|124515246|gb|EAY56756.1| Pyridine nucleotide-disulphide oxidoreductase [Leptospirillum
           rubarum]
          Length = 613

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 27/100 (27%), Gaps = 27/100 (27%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIES------------------------- 82
           R            E+CI C  C  +CP  A+ +                           
Sbjct: 502 RCLTCHVNPIFEGEKCIMCGGCVDVCPEYALKMIPLSDVDLDQESTAKVVESFLGVELSK 561

Query: 83  -GPRCHDGTRRTVRYDIDM-IKCIYCGLCQEACPVDAIVE 120
                 D         I    +CI CGLC + CP  AI  
Sbjct: 562 REEVGVDQNLDHSTAMIWEGSRCIRCGLCAKRCPTGAISM 601



 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 17/42 (40%)

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           E+  +        V    +  KCI CG C + CP  A+   P
Sbjct: 495 EAREQASRCLTCHVNPIFEGEKCIMCGGCVDVCPEYALKMIP 536


>gi|153800907|ref|ZP_01955493.1| RnfC-related protein [Vibrio cholerae MZO-3]
 gi|124123498|gb|EAY42241.1| RnfC-related protein [Vibrio cholerae MZO-3]
          Length = 853

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 29/109 (26%), Gaps = 20/109 (18%)

Query: 13  LKEFVGA---FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69
           L   +         L +          P  K +        + L    N    CI C  C
Sbjct: 333 LPRLIMGGPMMGFTLPH-------AQVPITKTANCILAPTRNELTSSDNEMA-CIRCGQC 384

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMI----KCIYCGLCQEACP 114
              CP   +     P+      +   +D         CI CG C   CP
Sbjct: 385 AEACPVSLL-----PQQLQWHAKAEEFDKCEELNLKDCIECGACAYVCP 428



 Score = 36.2 bits (82), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/13 (76%), Positives = 10/13 (76%)

Query: 103 CIYCGLCQEACPV 115
           CI CG C EACPV
Sbjct: 378 CIRCGQCAEACPV 390


>gi|121729986|ref|ZP_01682403.1| RnfC-related protein [Vibrio cholerae V52]
 gi|147674223|ref|YP_001216487.1| electron transport complex protein RnfC [Vibrio cholerae O395]
 gi|262167228|ref|ZP_06034940.1| electron transport complex protein RnfC [Vibrio cholerae RC27]
 gi|121628272|gb|EAX60785.1| RnfC-related protein [Vibrio cholerae V52]
 gi|146316106|gb|ABQ20645.1| RnfC-related protein [Vibrio cholerae O395]
 gi|262024372|gb|EEY43061.1| electron transport complex protein RnfC [Vibrio cholerae RC27]
          Length = 773

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 29/109 (26%), Gaps = 20/109 (18%)

Query: 13  LKEFVGA---FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69
           L   +         L +          P  K +        + L    N    CI C  C
Sbjct: 333 LPRLIMGGPMMGFTLPH-------AQVPITKTANCILAPTRNELTSSDNEMA-CIRCGQC 384

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMI----KCIYCGLCQEACP 114
              CP   +     P+      +   +D         CI CG C   CP
Sbjct: 385 AEACPVSLL-----PQQLQWHAKAEEFDKCEELDLKDCIECGACAYVCP 428



 Score = 36.2 bits (82), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/13 (76%), Positives = 10/13 (76%)

Query: 103 CIYCGLCQEACPV 115
           CI CG C EACPV
Sbjct: 378 CIRCGQCAEACPV 390


>gi|254848145|ref|ZP_05237495.1| electron transport complex protein RnfC [Vibrio cholerae MO10]
 gi|298498872|ref|ZP_07008679.1| electron transport complex protein RnfC [Vibrio cholerae MAK 757]
 gi|254843850|gb|EET22264.1| electron transport complex protein RnfC [Vibrio cholerae MO10]
 gi|297543205|gb|EFH79255.1| electron transport complex protein RnfC [Vibrio cholerae MAK 757]
          Length = 776

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 29/109 (26%), Gaps = 20/109 (18%)

Query: 13  LKEFVGA---FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69
           L   +         L +          P  K +        + L    N    CI C  C
Sbjct: 335 LPRLIMGGPMMGFTLPH-------AQVPITKTANCILAPTRNELTSSDNEMA-CIRCGQC 386

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMI----KCIYCGLCQEACP 114
              CP   +     P+      +   +D         CI CG C   CP
Sbjct: 387 AEACPVSLL-----PQQLQWHAKAEEFDKCEELDLKDCIECGACAYVCP 430



 Score = 36.2 bits (82), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/13 (76%), Positives = 10/13 (76%)

Query: 103 CIYCGLCQEACPV 115
           CI CG C EACPV
Sbjct: 380 CIRCGQCAEACPV 392


>gi|121587381|ref|ZP_01677151.1| RnfC-related protein [Vibrio cholerae 2740-80]
 gi|153819295|ref|ZP_01971962.1| RnfC-related protein [Vibrio cholerae NCTC 8457]
 gi|153823435|ref|ZP_01976102.1| RnfC-related protein [Vibrio cholerae B33]
 gi|255745440|ref|ZP_05419388.1| electron transport complex protein RnfC [Vibrio cholera CIRS 101]
 gi|262151308|ref|ZP_06028443.1| electron transport complex protein RnfC [Vibrio cholerae INDRE
           91/1]
 gi|17369132|sp|Q9KT88|RNFC_VIBCH RecName: Full=Electron transport complex protein rnfC
 gi|121548384|gb|EAX58446.1| RnfC-related protein [Vibrio cholerae 2740-80]
 gi|126510155|gb|EAZ72749.1| RnfC-related protein [Vibrio cholerae NCTC 8457]
 gi|126519044|gb|EAZ76267.1| RnfC-related protein [Vibrio cholerae B33]
 gi|255736515|gb|EET91912.1| electron transport complex protein RnfC [Vibrio cholera CIRS 101]
 gi|262030924|gb|EEY49553.1| electron transport complex protein RnfC [Vibrio cholerae INDRE
           91/1]
          Length = 774

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 29/109 (26%), Gaps = 20/109 (18%)

Query: 13  LKEFVGA---FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69
           L   +         L +          P  K +        + L    N    CI C  C
Sbjct: 333 LPRLIMGGPMMGFTLPH-------AQVPITKTANCILAPTRNELTSSDNEMA-CIRCGQC 384

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMI----KCIYCGLCQEACP 114
              CP   +     P+      +   +D         CI CG C   CP
Sbjct: 385 AEACPVSLL-----PQQLQWHAKAEEFDKCEELDLKDCIECGACAYVCP 428



 Score = 36.2 bits (82), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/13 (76%), Positives = 10/13 (76%)

Query: 103 CIYCGLCQEACPV 115
           CI CG C EACPV
Sbjct: 378 CIRCGQCAEACPV 390


>gi|331269074|ref|YP_004395566.1| hydrogenase (Fe) large chain [Clostridium botulinum BKT015925]
 gi|329125624|gb|AEB75569.1| hydrogenase (Fe) large chain [Clostridium botulinum BKT015925]
          Length = 441

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 10/65 (15%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            Y    ++CI C  C  +CP   I+ +   +          + ID  KC+ CG C  ACP
Sbjct: 23  FYFQITDKCIGCTKCAKVCPVSCISGKIKEK----------HVIDTEKCVKCGQCISACP 72

Query: 115 VDAIV 119
           + A+ 
Sbjct: 73  MGALP 77


>gi|325478783|gb|EGC81894.1| ferredoxin [Anaerococcus prevotii ACS-065-V-Col13]
          Length = 57

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 11/65 (16%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
             Y   E  CI+C  CE  CP  AI+                Y+ID   CI CG C   C
Sbjct: 1   MAYRIDENTCISCGTCEGECPVGAISQGDAA-----------YEIDADACIDCGSCAAVC 49

Query: 114 PVDAI 118
           PV+AI
Sbjct: 50  PVEAI 54



 Score = 34.3 bits (77), Expect = 5.7,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 16/27 (59%)

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGP 122
           Y ID   CI CG C+  CPV AI +G 
Sbjct: 3   YRIDENTCISCGTCEGECPVGAISQGD 29


>gi|301156226|emb|CBW15697.1| predicted iron-sulfur protein [Haemophilus parainfluenzae T3T1]
          Length = 197

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 20/64 (31%), Gaps = 10/64 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C  C   CP  AI   +             + I    C  C LC   CP D
Sbjct: 103 FIDENMCIGCTKCIQACPVDAIIGTNK----------AMHTIIPDLCTGCELCVAPCPTD 152

Query: 117 AIVE 120
            I  
Sbjct: 153 CISM 156



 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/25 (52%), Positives = 15/25 (60%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           ID   CI C  C +ACPVDAI+   
Sbjct: 104 IDENMCIGCTKCIQACPVDAIIGTN 128


>gi|296134509|ref|YP_003641751.1| formate dehydrogenase, alpha subunit [Thiomonas intermedia K12]
 gi|295794631|gb|ADG29421.1| formate dehydrogenase, alpha subunit [Thiomonas intermedia K12]
          Length = 977

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 5/65 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM----IKCIYCGLCQEACP 114
             + CI C  C   C  +    +       G    + +D+        C+ CG C +ACP
Sbjct: 180 NLDACIQCNRCVRACREE-QVNDVIGYAFRGHHSEIVFDLHDPMGDSTCVACGECVQACP 238

Query: 115 VDAIV 119
             A++
Sbjct: 239 TGALM 243


>gi|237737514|ref|ZP_04567995.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium mortiferum
           ATCC 9817]
 gi|229419394|gb|EEO34441.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium mortiferum
           ATCC 9817]
          Length = 585

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 6/85 (7%)

Query: 59  GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQEACPV 115
              +CI C+ CE +C   Q   I +G            ++  +    C  CG C   CPV
Sbjct: 148 DITKCIMCRRCETMCGDIQGCGILTGVDRGFNVIVNTAFNKNLLETNCTMCGQCVAVCPV 207

Query: 116 DAIVEGPNFEFATETRQELYYDKER 140
            A+ E  N     +  ++L   K++
Sbjct: 208 GALYETDN---TFKLVEDLMNPKKK 229


>gi|227830813|ref|YP_002832593.1| ATPase RIL [Sulfolobus islandicus L.S.2.15]
 gi|227457261|gb|ACP35948.1| ABC transporter related [Sulfolobus islandicus L.S.2.15]
          Length = 600

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 22/75 (29%), Gaps = 5/75 (6%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
                +       ++C     C   CP        G           +  I    CI CG
Sbjct: 1   MRVAVINYDFCKPDKCNL--ECINFCPVD---RSGGKAIELSDIVKGKPVIYEETCIGCG 55

Query: 108 LCQEACPVDAIVEGP 122
           +C + CP +AI    
Sbjct: 56  ICVKKCPYEAISIVN 70


>gi|224368298|ref|YP_002602461.1| HdrA2 [Desulfobacterium autotrophicum HRM2]
 gi|223691014|gb|ACN14297.1| HdrA2 [Desulfobacterium autotrophicum HRM2]
          Length = 1017

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 12/78 (15%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGP-------RCHDGTRRTVRYDIDMIKCIY- 105
                  ++CIAC LC   CP +     +                  ++Y ID   C+Y 
Sbjct: 106 HPRYVDTDKCIACGLCAEKCPKKVDDEYNEGLGKRKAIYVSYSQAVPLKYTIDPENCLYL 165

Query: 106 ----CGLCQEACPVDAIV 119
               CG C++ CP  AI 
Sbjct: 166 TKGKCGNCEKVCPSHAIN 183



 Score = 42.4 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 9/61 (14%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               ERC  C  C A+CP  AIT++         +      ++   C  CG C   CP +
Sbjct: 945 QINPERCAGCGGCIAVCPYNAITMD---------KVNHVAVVNDALCKGCGACAATCPSE 995

Query: 117 A 117
           A
Sbjct: 996 A 996



 Score = 41.6 bits (96), Expect = 0.037,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 13/32 (40%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
            I+  +C  CG C   CP +AI        A 
Sbjct: 945 QINPERCAGCGGCIAVCPYNAITMDKVNHVAV 976


>gi|197103274|ref|YP_002128652.1| pyruvate:ferredoxin oxidoreductase [Phenylobacterium zucineum HLK1]
 gi|196480550|gb|ACG80077.1| pyruvate:ferredoxin oxidoreductase [Phenylobacterium zucineum HLK1]
          Length = 1203

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 24/89 (26%), Gaps = 24/89 (26%)

Query: 58  NGEERCIACKLCEAICPA---QAITIESGP-------------RCHDGTRRTVRYDIDMI 101
              + CI C  C   CP    +A   + G                          ++ + 
Sbjct: 694 WDPDLCIQCGQCGFACPHSVIRAKYYDEGALAKAPAGFKSAPVNTRGNPNVRFSLEVYLE 753

Query: 102 KCIYCGLCQEACPVD--------AIVEGP 122
            C  CG+C E CP          AI    
Sbjct: 754 DCTGCGVCVEVCPAHSPLEPDKKAINLTD 782


>gi|194446223|ref|YP_002041458.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194404886|gb|ACF65108.1| dihydroorotate dehydrogenase family protein [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
          Length = 411

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +      +E+C+ C  C   C         G +  +    +     +  K
Sbjct: 324 IPAEELDRSYIVYPRINQEKCVGCGRCYISCYDG------GHQAMEWDEHSRTPHCNTEK 377

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 378 CVGCLLCGHVCPVACIDLG 396


>gi|168242273|ref|ZP_02667205.1| dihydroorotate dehydrogenase family protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|194448536|ref|YP_002046240.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|197261723|ref|ZP_03161797.1| dihydroorotate dehydrogenase family protein [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|200387718|ref|ZP_03214330.1| dihydroorotate dehydrogenase family protein [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|194406840|gb|ACF67059.1| dihydroorotate dehydrogenase family protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|197239978|gb|EDY22598.1| dihydroorotate dehydrogenase family protein [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|199604816|gb|EDZ03361.1| dihydroorotate dehydrogenase family protein [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|205338639|gb|EDZ25403.1| dihydroorotate dehydrogenase family protein [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
          Length = 411

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +      +E+C+ C  C   C         G +  +    +     +  K
Sbjct: 324 IPAEELDRSYIVYPRINQEKCVGCGRCYISCYDG------GHQAMEWDEHSRTPHCNTEK 377

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 378 CVGCLLCGHVCPVACIDLG 396


>gi|84514374|ref|ZP_01001738.1| putative ferredoxin [Loktanella vestfoldensis SKA53]
 gi|84511425|gb|EAQ07878.1| putative ferredoxin [Loktanella vestfoldensis SKA53]
          Length = 634

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 25/82 (30%), Gaps = 9/82 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + C  C  C   CPA A++                       C+ C +C   CP DA+
Sbjct: 496 DHDACTLCLACVGACPAGALSDNPD---------LPMLRFTESACVQCSICVATCPEDAL 546

Query: 119 VEGPNFEFATETRQELYYDKER 140
              P  + A          +E 
Sbjct: 547 SLTPQIDLAAWAAPRRVLKQED 568


>gi|308186747|ref|YP_003930878.1| Electron transport complex protein rnfB [Pantoea vagans C9-1]
 gi|308057257|gb|ADO09429.1| Electron transport complex protein rnfB [Pantoea vagans C9-1]
          Length = 192

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 22/74 (29%), Gaps = 10/74 (13%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
            E         E  CI C  C   CP  AI   +             + +    C  C L
Sbjct: 103 KEPVRTVAFIDEANCIGCTKCIQACPVDAIVGAT----------RAMHTVLSDVCTGCDL 152

Query: 109 CQEACPVDAIVEGP 122
           C   CP D I   P
Sbjct: 153 CVAPCPTDCIEMRP 166


>gi|291085135|ref|ZP_06352165.2| dihydroorotate dehydrogenase family protein [Citrobacter youngae
           ATCC 29220]
 gi|291072078|gb|EFE10187.1| dihydroorotate dehydrogenase family protein [Citrobacter youngae
           ATCC 29220]
          Length = 380

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 23/82 (28%), Gaps = 12/82 (14%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICP---AQAITIESGPRCHDGTRRTVRYDID 99
                     +       ++C+ C  C   C     QA+      R              
Sbjct: 293 IPAEDLDRSYIVYPNIHLDKCVGCGRCYISCYDGGHQAMEWNEETRTPHCD--------- 343

Query: 100 MIKCIYCGLCQEACPVDAIVEG 121
             KC+ C LC   CPV  I  G
Sbjct: 344 TEKCVGCLLCGHVCPVACIDLG 365


>gi|298530704|ref|ZP_07018106.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510078|gb|EFI33982.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 367

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 30/109 (27%), Gaps = 21/109 (19%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           +  F   L+       T            +      L    +    C  C LC  +C + 
Sbjct: 158 LSGFGGALKNLAMGCATRQ---------GKMHQHSGLAPKVDD-SHCQGCGLCMQVCASG 207

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           A+T+                 +D  KC+ C  C   C   A+      E
Sbjct: 208 ALTLVDEKV-----------RMDPEKCVGCAACILVCKTGALQINWETE 245


>gi|187438958|gb|ACD10931.1| pyruvate:ferredoxin oxidoreductase [Blastocystis sp. NandII]
          Length = 1220

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 42/147 (28%), Gaps = 32/147 (21%)

Query: 14  KEFVGAFF--LCLRYFFKAKTTINYP---FEKGSTSPRFRGEHALRRYPNGEERCIACKL 68
            +     +    L    K   +   P    E  ++    RG        N ++ C  C  
Sbjct: 670 PDAFKNLYYPTTLLEGDKFPVSTFTPGGVQETNTSQYEKRGFAVNVPVWN-KDTCTQCNQ 728

Query: 69  CEAICPA--------QAITIESGPR--------CHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           C  +CP          A   +  P           +      R  +  + C  C +C   
Sbjct: 729 CSLMCPHAVIRPFLLDAAESKKAPASFATLPAAGDELKGLNFRIQMSPLDCTGCEVCANV 788

Query: 113 CPVDAIVEGP----------NFEFATE 129
           CP  ++   P          N+EFAT 
Sbjct: 789 CPTQSLTMKPLSAVRDVEAKNWEFATT 815


>gi|168186810|ref|ZP_02621445.1| hydrogenase [Clostridium botulinum C str. Eklund]
 gi|169295206|gb|EDS77339.1| hydrogenase [Clostridium botulinum C str. Eklund]
          Length = 579

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 38/106 (35%), Gaps = 7/106 (6%)

Query: 20  FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79
             + ++Y    K   N      +     R +  +        +CI C  C   C  +  T
Sbjct: 114 LKVVMKYKVGPKVRYNIENNTEANYLDTRSKSIII----NRHKCIKCGRCAITCKNKTNT 169

Query: 80  IESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPVDAIVEGP 122
                +  DG+ +    D   +D   C+ CG C   CPV A+ E P
Sbjct: 170 QALLFKIIDGSFKVKTIDDKCLDDTNCLLCGQCVNICPVAALSETP 215


>gi|146306435|ref|YP_001186900.1| electron transport complex protein RnfB [Pseudomonas mendocina ymp]
 gi|166991044|sp|A4XS52|RNFB_PSEMY RecName: Full=Electron transport complex protein rnfB
 gi|145574636|gb|ABP84168.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas
           mendocina ymp]
          Length = 191

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 27/83 (32%), Gaps = 10/83 (12%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
             +        GE         E  CI C  C   CP  AI   +             + 
Sbjct: 89  DVEPEPLDAVEGEKPQMVAFIREAECIGCTKCIQACPVDAIVGAA----------RQMHT 138

Query: 98  IDMIKCIYCGLCQEACPVDAIVE 120
           + + +C  C LC E CPVD I  
Sbjct: 139 VIVSECTGCDLCVEPCPVDCIDM 161


>gi|119719485|ref|YP_919980.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Thermofilum pendens Hrk 5]
 gi|119524605|gb|ABL77977.1| pyruvate ferredoxin oxidoreductase, delta subunit [Thermofilum
           pendens Hrk 5]
          Length = 98

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 10/65 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            + +CI C +C   CP  AI                   +D   C  CG+C   CPV AI
Sbjct: 43  NQAKCIRCLMCWVHCPEPAILRGEDDSVA----------VDYDYCKGCGICANVCPVHAI 92

Query: 119 VEGPN 123
              P 
Sbjct: 93  EMVPE 97


>gi|52549058|gb|AAU82907.1| MinD superfamily P-loop ATPase [uncultured archaeon GZfos23H9]
          Length = 286

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 26/81 (32%), Gaps = 11/81 (13%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
                 +  + L    N  + C  C  C A C   A+ +                 +   
Sbjct: 57  PVIEEIKPAYTLVPRVN-YDLCDYCGKCAAACEYNALVVVPQKEV----------MVFPE 105

Query: 102 KCIYCGLCQEACPVDAIVEGP 122
            C  CGLC   CP DAI E P
Sbjct: 106 LCHGCGLCSLVCPQDAISEEP 126


>gi|126173116|ref|YP_001049265.1| formate dehydrogenase subunit alpha [Shewanella baltica OS155]
 gi|125996321|gb|ABN60396.1| formate dehydrogenase, alpha subunit [Shewanella baltica OS155]
          Length = 1425

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 24/75 (32%), Gaps = 15/75 (20%)

Query: 59  GEERCIACKLCEAICPAQAITIE---------------SGPRCHDGTRRTVRYDIDMIKC 103
              RCI+C  C  +C  Q+                   S        R      +   KC
Sbjct: 647 DANRCISCGKCVDVCQLQSGHCAIQFAHDSYQALPQDLSETIERRAPRVGFSASMADSKC 706

Query: 104 IYCGLCQEACPVDAI 118
           + CG C + CP  A+
Sbjct: 707 VQCGNCVQVCPTGAL 721



 Score = 34.7 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 5/50 (10%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL-C 109
            +C+ C  C  +CP  A+      R  D T       I    C YCG+ C
Sbjct: 704 SKCVQCGNCVQVCPTGALVDARDKRQGDETPLKTASTI----CTYCGVGC 749


>gi|329910059|ref|ZP_08275218.1| putative NADH:ubiquinone oxidoreductase, subunit RnfB
           [Oxalobacteraceae bacterium IMCC9480]
 gi|327546284|gb|EGF31313.1| putative NADH:ubiquinone oxidoreductase, subunit RnfB
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 242

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 21/62 (33%), Gaps = 10/62 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C LC   CP  AI                 + I    C  C LC   CPVD I
Sbjct: 98  DEALCIGCTLCIQACPVDAILGAPKQ----------MHTILADLCTGCDLCVAPCPVDCI 147

Query: 119 VE 120
             
Sbjct: 148 AM 149



 Score = 37.0 bits (84), Expect = 0.79,   Method: Composition-based stats.
 Identities = 15/28 (53%), Positives = 16/28 (57%)

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           R      ID   CI C LC +ACPVDAI
Sbjct: 90  RPRPVAIIDEALCIGCTLCIQACPVDAI 117


>gi|327483731|gb|AEA78138.1| Electron transport complex protein RnfC [Vibrio cholerae LMA3894-4]
          Length = 770

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 29/109 (26%), Gaps = 20/109 (18%)

Query: 13  LKEFVGA---FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69
           L   +         L +          P  K +        + L    N    CI C  C
Sbjct: 333 LPRLIMGGPMMGFTLPH-------AQVPITKTANCILAPTRNELTSSENEMA-CIRCGQC 384

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMI----KCIYCGLCQEACP 114
              CP   +     P+      +   +D         CI CG C   CP
Sbjct: 385 AEACPVSLL-----PQQLQWHAKAEEFDKCEELNLKDCIECGACAYVCP 428



 Score = 36.2 bits (82), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/13 (76%), Positives = 10/13 (76%)

Query: 103 CIYCGLCQEACPV 115
           CI CG C EACPV
Sbjct: 378 CIRCGQCAEACPV 390


>gi|298376819|ref|ZP_06986774.1| dihydroorotate dehydrogenase family protein [Bacteroides sp.
           3_1_19]
 gi|298266697|gb|EFI08355.1| dihydroorotate dehydrogenase family protein [Bacteroides sp.
           3_1_19]
          Length = 497

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 21/80 (26%), Gaps = 7/80 (8%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
                P       + R       C+ C  C   C                     +  ID
Sbjct: 425 PNIVPPERLERTQIHRPTVDNSLCLGCGRCFVSCNDG-------GHQAIHFTSMRKPVID 477

Query: 100 MIKCIYCGLCQEACPVDAIV 119
             KC+ C LC   CP  AI 
Sbjct: 478 EQKCVGCHLCALVCPTFAIH 497


>gi|297539545|ref|YP_003675314.1| RnfABCDGE type electron transport complex subunit B [Methylotenera
           sp. 301]
 gi|297258892|gb|ADI30737.1| electron transport complex, RnfABCDGE type, B subunit
           [Methylotenera sp. 301]
          Length = 190

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 25/69 (36%), Gaps = 10/69 (14%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C LC   CP  AI   +             + I   +C  C LC   CPVD
Sbjct: 107 FIDEATCIGCTLCIQACPVDAILGAAK----------HMHTIISSECTGCELCLAPCPVD 156

Query: 117 AIVEGPNFE 125
            I   P  E
Sbjct: 157 CITMVPIAE 165


>gi|295091715|emb|CBK77822.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric
           [Clostridium cf. saccharolyticum K10]
          Length = 1177

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 20/81 (24%), Gaps = 15/81 (18%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQ--------------AITIESGPRCHDGTRRT 93
           RG        N  + CI C  C  +CP                A                
Sbjct: 680 RGIAVNVPTWN-PDNCIQCNFCSYVCPHAVIRPIAMTDAELAAAPEGTKALPMTGMPEYK 738

Query: 94  VRYDIDMIKCIYCGLCQEACP 114
               I  + C  CG C   CP
Sbjct: 739 FAMTISALDCTGCGSCANVCP 759


>gi|283798140|ref|ZP_06347293.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium sp.
           M62/1]
 gi|291074119|gb|EFE11483.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium sp.
           M62/1]
          Length = 1177

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 20/81 (24%), Gaps = 15/81 (18%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQ--------------AITIESGPRCHDGTRRT 93
           RG        N  + CI C  C  +CP                A                
Sbjct: 680 RGIAVNVPTWN-PDNCIQCNFCSYVCPHAVIRPIAMTDAELAAAPEGTKALPMTGMPEYK 738

Query: 94  VRYDIDMIKCIYCGLCQEACP 114
               I  + C  CG C   CP
Sbjct: 739 FAMTISALDCTGCGSCANVCP 759


>gi|239624110|ref|ZP_04667141.1| anaerobic sulfite reduction protein C [Clostridiales bacterium
           1_7_47_FAA]
 gi|239522141|gb|EEQ62007.1| anaerobic sulfite reduction protein C [Clostridiales bacterium
           1_7_47FAA]
          Length = 320

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 24/83 (28%), Gaps = 8/83 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +         G   +      ++RC++C  C   C                     R
Sbjct: 145 CPNDCAKVRMHDFGIMGMTHPEYRQDRCVSCGACVKAC--------EKKSVGALKTVNYR 196

Query: 96  YDIDMIKCIYCGLCQEACPVDAI 118
              +  KCI CG C   CP  A 
Sbjct: 197 VQRNHEKCIGCGECVIQCPTRAW 219


>gi|168209486|ref|ZP_02635111.1| nitroreductase family protein [Clostridium perfringens B str. ATCC
           3626]
 gi|170712325|gb|EDT24507.1| nitroreductase family protein [Clostridium perfringens B str. ATCC
           3626]
          Length = 272

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 15/91 (16%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                  +CI C LC   C    I +  G              I    C+ CG C   CP
Sbjct: 1   MMNVDTSKCIGCTLCMQDCIVSDIEMLDGKAH-----------IKNESCMECGHCIAICP 49

Query: 115 VDAIVEGPNFEFA---TETRQELYYDKERLL 142
            +A+ +  +++ +      +     D +RLL
Sbjct: 50  KEAVSDS-DYDMSKIQEYNKDSFDIDSDRLL 79


>gi|160937031|ref|ZP_02084394.1| hypothetical protein CLOBOL_01920 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439932|gb|EDP17680.1| hypothetical protein CLOBOL_01920 [Clostridium bolteae ATCC
           BAA-613]
          Length = 1178

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 21/81 (25%), Gaps = 15/81 (18%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG        N  + CI C  C  +CP               +A                
Sbjct: 680 RGIAVKVPVWN-PDNCIQCNFCAYVCPHAVIRPVAMTADEAAKAPADMKMKDMTGMAGYK 738

Query: 94  VRYDIDMIKCIYCGLCQEACP 114
               +  + C  CG C   CP
Sbjct: 739 FAISVSALDCTGCGSCANVCP 759


>gi|82734611|gb|ABB89715.1| trichloroethene reductive dehalogenase [Dehalococcoides sp.
           BRS-PCE]
          Length = 554

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 3/60 (5%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID---MIKCIYCGLCQEACPVD 116
            E C  C +C   CP QAI+ E              Y+       KCI C  C+  CP  
Sbjct: 434 REFCKTCGICAEHCPTQAISHEGPRYDSPHWDXVSGYEGWHLDYHKCINCTNCETFCPFF 493



 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 103 CIYCGLCQEACPVDAI-VEGPNFE 125
           C  CG+C E CP  AI  EGP ++
Sbjct: 437 CKTCGICAEHCPTQAISHEGPRYD 460


>gi|78043445|ref|YP_360076.1| iron-sulfur cluster-binding protein [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995560|gb|ABB14459.1| iron-sulfur cluster-binding protein [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 368

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 11/62 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E C  C+ C   CPAQAI+ E+G              I+   CI CG C   C   AI
Sbjct: 191 NAEICTGCRKCARWCPAQAISYENGKAV-----------INYELCIGCGECTVTCNYHAI 239

Query: 119 VE 120
             
Sbjct: 240 KI 241


>gi|87303134|ref|ZP_01085932.1| NAD-reducing hydrogenase subunit U [Synechococcus sp. WH 5701]
 gi|87282301|gb|EAQ74261.1| NAD-reducing hydrogenase subunit U [Synechococcus sp. WH 5701]
          Length = 238

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 24/79 (30%), Gaps = 6/79 (7%)

Query: 59  GEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLCQEACP 114
              RCI C  C  +C     A   +   R                +  C  CG C   CP
Sbjct: 144 DHNRCILCTRCVRVCDEVEGAHVWDVAWRGEHCRIIAGLDQPWGAVDACTDCGKCVMVCP 203

Query: 115 VDAIVEGPNFEFATETRQE 133
             A+    + E   E  ++
Sbjct: 204 TGALFHKGDSE--GEKHED 220


>gi|331696856|ref|YP_004333095.1| formate dehydrogenase subunit alpha [Pseudonocardia dioxanivorans
           CB1190]
 gi|326951545|gb|AEA25242.1| formate dehydrogenase, alpha subunit [Pseudonocardia dioxanivorans
           CB1190]
          Length = 942

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 26/80 (32%), Gaps = 2/80 (2%)

Query: 55  RYPNGEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
            +     +CI C  C   C      + +    R    T      D     C+ CG C +A
Sbjct: 162 YFEFDPAKCILCSRCVRACDEVQGTLALTIEGRGFGSTVSPGGTDFLSSDCVSCGACVQA 221

Query: 113 CPVDAIVEGPNFEFATETRQ 132
           CP   + E    E    TR 
Sbjct: 222 CPTATLQERSVVELGLPTRS 241


>gi|315634428|ref|ZP_07889715.1| electron transport complex protein RnfC [Aggregatibacter segnis
           ATCC 33393]
 gi|315477018|gb|EFU67763.1| electron transport complex protein RnfC [Aggregatibacter segnis
           ATCC 33393]
          Length = 701

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 33/104 (31%), Gaps = 4/104 (3%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CP + +  +               +  +  CI CG+C   CP  
Sbjct: 372 PEQEKSCIRCSACSDACPVK-LMPQQLYWFARSENHEKSEEYSLKDCIECGVCAYVCPSH 430

Query: 117 AIVEGPNFEFATETRQELYYDKERL-LNNGDRWESEIVRNIVTD 159
            I     F        E    K +L      R+E    R    +
Sbjct: 431 -IPLIQYFRQEKAKIWE-IKHKAKLAEEAKIRFEQRQARLEREE 472


>gi|312899003|ref|ZP_07758390.1| 4Fe-4S binding domain protein [Megasphaera micronuciformis F0359]
 gi|310619910|gb|EFQ03483.1| 4Fe-4S binding domain protein [Megasphaera micronuciformis F0359]
          Length = 281

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 28/87 (32%), Gaps = 18/87 (20%)

Query: 47  FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
           F   +AL      + +CI C  C A+C +                           CI C
Sbjct: 212 FFNRYALTGIAVDKNKCIHCGRCAAVCKSDVTLAGDKE------------------CISC 253

Query: 107 GLCQEACPVDAIVEGPNFEFATETRQE 133
           G C + CPV A+ +        E R  
Sbjct: 254 GECVDVCPVHAVYKRKLIMRKVEERDN 280


>gi|308274768|emb|CBX31367.1| hypothetical protein N47_E48790 [uncultured Desulfobacterium sp.]
          Length = 943

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 23/67 (34%), Gaps = 10/67 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E C+ C  C   CP          +           +ID  KC  CG+C   CP  AI
Sbjct: 871 DTEHCVKCLTCVRSCPFDVPVFNIEKQI---------IEIDDAKCQGCGVCASVCPRQAI 921

Query: 119 VEGPNFE 125
                +E
Sbjct: 922 QL-NYYE 927



 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 24/86 (27%), Gaps = 7/86 (8%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP-------RCHDGTRRTVRY 96
              F      R        C  C  C   CP  AI   +                  + +
Sbjct: 29  PGNFTVALVNRPRYIDPVICTGCGECARHCPVTAINRYNKGLDERRATFIEYPQAVPLAF 88

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGP 122
            ID   CI CGLC+  C   AI    
Sbjct: 89  GIDANTCIGCGLCESMCVAKAIRYDD 114


>gi|326791478|ref|YP_004309299.1| hydrogenase, Fe-only [Clostridium lentocellum DSM 5427]
 gi|326542242|gb|ADZ84101.1| hydrogenase, Fe-only [Clostridium lentocellum DSM 5427]
          Length = 584

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 59  GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115
             ++CI C+ CE +C   Q++   SG            +++D+    C +CG C   CP 
Sbjct: 150 DMDKCIMCRRCETMCNKVQSVGALSGINRGFDAVVATAFEVDLADSVCTHCGQCVAVCPT 209

Query: 116 DAIVE 120
            A+ E
Sbjct: 210 GALSE 214


>gi|302873899|ref|YP_003842532.1| sulfite reductase, subunit C [Clostridium cellulovorans 743B]
 gi|307689854|ref|ZP_07632300.1| anaerobic sulfite reductase, subunit C [Clostridium cellulovorans
           743B]
 gi|302576756|gb|ADL50768.1| sulfite reductase, subunit C [Clostridium cellulovorans 743B]
          Length = 316

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 25/83 (30%), Gaps = 8/83 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +      +  G   +        RCI C+ C   C  +A    S             
Sbjct: 146 CPNDCIKARMQDFGIIGMTEPQYDPYRCIGCQACVTNCKKRATGALSFENFKVVRDH--- 202

Query: 96  YDIDMIKCIYCGLCQEACPVDAI 118
                 KCI CG C   CP +A 
Sbjct: 203 -----SKCIGCGECVGKCPTNAW 220


>gi|308234259|ref|ZP_07664996.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Atopobium
           vaginae DSM 15829]
 gi|328943810|ref|ZP_08241275.1| hypothetical protein HMPREF0091_10500 [Atopobium vaginae DSM 15829]
 gi|327491779|gb|EGF23553.1| hypothetical protein HMPREF0091_10500 [Atopobium vaginae DSM 15829]
          Length = 438

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 26/84 (30%), Gaps = 12/84 (14%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
                C  C  C  +CP  A  ++             R+ +    C+ C  C   CP   
Sbjct: 331 CDMSACTVCSACTRVCPVNACNLDE----------HGRFSVQTAYCVNCSACALVCPEQC 380

Query: 118 IVE--GPNFEFATETRQELYYDKE 139
           IV   G   E      + +   KE
Sbjct: 381 IVMKQGDTHELIVRDEEAIRLQKE 404



 Score = 37.4 bits (85), Expect = 0.60,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 26/82 (31%), Gaps = 12/82 (14%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
            +A R    G      C  C  +CP  AI I+                     C  CGLC
Sbjct: 64  YNAYRAEGVGAHTICTCHACMDVCPVDAIDIKGSTVK------------IADTCRACGLC 111

Query: 110 QEACPVDAIVEGPNFEFATETR 131
             ACP +A +       +   R
Sbjct: 112 IAACPTEAFIVSRFMAKSLYDR 133


>gi|254512703|ref|ZP_05124769.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Rhodobacteraceae
           bacterium KLH11]
 gi|221532702|gb|EEE35697.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Rhodobacteraceae
           bacterium KLH11]
          Length = 396

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 11/68 (16%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L+++    E CI C  CE  CP QAI  +                ++   C +C  C   
Sbjct: 5   LKQHLIDPEICIRCYTCEMTCPVQAIEHDDNNVV-----------VNADLCNFCMDCIPV 53

Query: 113 CPVDAIVE 120
           CP  +I E
Sbjct: 54  CPTGSIDE 61



 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 16/35 (45%)

Query: 89  GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
             +   ++ ID   CI C  C+  CPV AI    N
Sbjct: 1   MNKPLKQHLIDPEICIRCYTCEMTCPVQAIEHDDN 35


>gi|168216021|ref|ZP_02641646.1| nitroreductase family protein [Clostridium perfringens NCTC 8239]
 gi|182381714|gb|EDT79193.1| nitroreductase family protein [Clostridium perfringens NCTC 8239]
          Length = 272

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 15/91 (16%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                  +CI C LC   C    I +  G              I    C+ CG C   CP
Sbjct: 1   MMNVDTSKCIGCTLCMQDCIVSDIEMLDGKAH-----------IKNESCMECGHCIAICP 49

Query: 115 VDAIVEGPNFEFA---TETRQELYYDKERLL 142
            +A+ +  +++ +      +     D +RLL
Sbjct: 50  KEAVSDS-DYDMSKIQEYNKDSFDIDSDRLL 79


>gi|149204187|ref|ZP_01881155.1| formate dehydrogenase, alpha subunit [Roseovarius sp. TM1035]
 gi|149142629|gb|EDM30674.1| formate dehydrogenase, alpha subunit [Roseovarius sp. TM1035]
          Length = 924

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 5/65 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114
             + CI C LC   C  +    +       G      +D    +    C+ CG C +ACP
Sbjct: 147 NLDACIQCGLCVRACR-EVQVNDVIGMAGRGHDAYPVFDLADPMGDSTCVACGECVQACP 205

Query: 115 VDAIV 119
             A++
Sbjct: 206 TGALM 210


>gi|146281595|ref|YP_001171748.1| electron transport complex protein RnfB [Pseudomonas stutzeri
           A1501]
 gi|189043386|sp|A4VIV5|RNFB_PSEU5 RecName: Full=Electron transport complex protein rnfB; AltName:
           Full=Nitrogen fixation protein rnfB
 gi|145569800|gb|ABP78906.1| electron transport complex, B subunit [Pseudomonas stutzeri A1501]
 gi|327479773|gb|AEA83083.1| electron transport complex protein RnfB [Pseudomonas stutzeri DSM
           4166]
          Length = 191

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 27/83 (32%), Gaps = 10/83 (12%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
             +        GE         E  CI C  C   CP  AI   +             + 
Sbjct: 89  DVEPEPLDAEGGEKPQMVAYIREAECIGCTKCIQACPVDAIVGAA----------RQMHT 138

Query: 98  IDMIKCIYCGLCQEACPVDAIVE 120
           + + +C  C LC E CPVD I  
Sbjct: 139 VIISECTGCDLCVEPCPVDCIDM 161


>gi|51947501|gb|AAU14235.1| hydrogenosomal Fe- hydrogenase [Nyctotherus ovalis]
          Length = 1198

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 1/65 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++CI C +C   C  Q +          G        +D  +CI CG C   CP  AI
Sbjct: 167 DNDKCINCDICVHTCSLQGLNALGFYNEE-GHFVKSMGTLDTSECIQCGQCINRCPTGAI 225

Query: 119 VEGPN 123
            E   
Sbjct: 226 TEKSE 230


>gi|77360047|ref|YP_339622.1| electron transport complex protein RnfB [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76874958|emb|CAI86179.1| Electron transport complex protein rnfB [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 184

 Score = 47.0 bits (110), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 10/69 (14%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E+ CI C  C   CP  AI   +             + + + +C  C LC E CPVD
Sbjct: 108 YIREDECIGCTKCIQACPVDAIVGAT----------RQMHTVLIDECTGCDLCVEPCPVD 157

Query: 117 AIVEGPNFE 125
            I   P  E
Sbjct: 158 CIDMLPVAE 166


>gi|308271661|emb|CBX28269.1| hypothetical protein N47_G35930 [uncultured Desulfobacterium sp.]
          Length = 988

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 28/79 (35%), Gaps = 7/79 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIE-------SGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
                +C AC  C  +CP  A+                      + Y ID   CI CG+C
Sbjct: 81  YIDSVKCTACGQCRQVCPVTAVNEFDCRLDLRKATFIKFPQAVPLSYTIDRNVCIGCGMC 140

Query: 110 QEACPVDAIVEGPNFEFAT 128
           ++AC   AI       F+ 
Sbjct: 141 EKACLAGAISYSDQPRFSE 159



 Score = 42.0 bits (97), Expect = 0.025,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 19/64 (29%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +RC AC  C   CP     +                 I+   C  CG C   CP  AI
Sbjct: 915 NPDRCAACLTCVRTCPYGVPRVGEEGYAV----------IEPSDCHGCGCCVSECPGKAI 964

Query: 119 VEGP 122
               
Sbjct: 965 TLKH 968


>gi|284164324|ref|YP_003402603.1| formate dehydrogenase, subunit alpha [Haloterrigena turkmenica DSM
           5511]
 gi|284013979|gb|ADB59930.1| formate dehydrogenase, alpha subunit [Haloterrigena turkmenica DSM
           5511]
          Length = 1130

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 4/69 (5%)

Query: 57  PNGEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
                +CI C  C   C        + +E   +      +      D   C+ CG C   
Sbjct: 213 QIDRNKCILCNRCVEACNDVQVEGVLRMEGNGQDTRIAFQNGEDTFDESTCVSCGHCATV 272

Query: 113 CPVDAIVEG 121
           CP  A+VE 
Sbjct: 273 CPTGALVEQ 281


>gi|163736778|ref|ZP_02144196.1| formate dehydrogenase, alpha subunit [Phaeobacter gallaeciensis
           BS107]
 gi|161389382|gb|EDQ13733.1| formate dehydrogenase, alpha subunit [Phaeobacter gallaeciensis
           BS107]
          Length = 924

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI----DMIKCIYCGLCQEACP 114
             + CI+C LC   C  +    +       G      +DI        C+ CG C +ACP
Sbjct: 147 NLDACISCNLCVRACR-EVQVNDVIGMAGRGHDAYPVFDIADPMGASSCVACGECVQACP 205

Query: 115 VDAIV 119
             A++
Sbjct: 206 TGALM 210


>gi|163743706|ref|ZP_02151081.1| formate dehydrogenase, alpha subunit [Phaeobacter gallaeciensis
           2.10]
 gi|161383073|gb|EDQ07467.1| formate dehydrogenase, alpha subunit [Phaeobacter gallaeciensis
           2.10]
          Length = 924

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI----DMIKCIYCGLCQEACP 114
             + CI+C LC   C  +    +       G      +DI        C+ CG C +ACP
Sbjct: 147 NLDACISCNLCVRACR-EVQVNDVIGMAGRGHDAYPVFDIADPMGASSCVACGECVQACP 205

Query: 115 VDAIV 119
             A++
Sbjct: 206 TGALM 210


>gi|70606290|ref|YP_255160.1| zinc-containing ferredoxin [Sulfolobus acidocaldarius DSM 639]
 gi|68566938|gb|AAY79867.1| zinc-containing ferredoxin [Sulfolobus acidocaldarius DSM 639]
          Length = 104

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + CIA   C   CP         P      ++     ++   CI+C  C   CPV AI
Sbjct: 42  DFDLCIADGSCITACPVNVFQWYETPGHPASEKKADP--VNEQACIFCMACVNVCPVAAI 99

Query: 119 VEGP 122
              P
Sbjct: 100 DVKP 103


>gi|329298911|ref|ZP_08256247.1| electron transport complex protein RnfB [Plautia stali symbiont]
          Length = 192

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 24/84 (28%), Gaps = 10/84 (11%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
                    E  CI C  C   CP  AI   +             + +    C  C LC 
Sbjct: 105 PVRTVAWIDEANCIGCTKCIQACPVDAIVGAT----------RAMHTVLSDVCTGCDLCV 154

Query: 111 EACPVDAIVEGPNFEFATETRQEL 134
             CP D I   P        + +L
Sbjct: 155 ALCPTDCIEMRPVATTTANWKWDL 178


>gi|310827119|ref|YP_003959476.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Eubacterium limosum KIST612]
 gi|308738853|gb|ADO36513.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Eubacterium limosum KIST612]
          Length = 1178

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 33/109 (30%), Gaps = 28/109 (25%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIE----------------SGPRCHDGTR 91
           RG           E CI C  C  +CP  AI                             
Sbjct: 677 RGIAVNVPQWI-PENCIQCNQCSFVCPHAAIRPVLMDEAEKAAAPEGFDSIKANGKQFDG 735

Query: 92  RTVRYDIDMIKCIYCGLCQEACP--VDAIVEGP---------NFEFATE 129
              R  + ++ C  CG C +ACP    A+   P         N+E+AT 
Sbjct: 736 LQYRIQVSVLDCTGCGNCADACPAKTKALEMKPLETQENQVANWEYATT 784


>gi|296188750|ref|ZP_06857137.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium
           carboxidivorans P7]
 gi|296046677|gb|EFG86124.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium
           carboxidivorans P7]
          Length = 1170

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 29/98 (29%), Gaps = 20/98 (20%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG   +       ++CI C  C  ICP                A       +       T
Sbjct: 671 RGIAVMIPQWQ-IDKCIQCNQCSYICPHATVRPFLLNEEEVKNAPDTFETKKAAGKGLET 729

Query: 94  VRYDID--MIKCIYCGLCQEACPVDA---IVEGPNFEF 126
             Y I    + C  CG C + CP      I+E    E 
Sbjct: 730 FEYRIQVDPLDCTGCGNCADICPAPGKALIMEQAEHEI 767


>gi|289434096|ref|YP_003463968.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|289170340|emb|CBH26880.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
          Length = 1216

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 29/93 (31%), Gaps = 16/93 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPA------------QAITIESGPRCHDGTRRTVRYDI 98
            AL       E C  C  C  +CP              A   E         +  + Y I
Sbjct: 680 IALEVPEWISENCTMCNECAFVCPHAAIRPILTDEAEMASAPEGFMTRKMRGKDGLEYRI 739

Query: 99  D--MIKCIYCGLCQEACPV--DAIVEGPNFEFA 127
               + C  C LC E CP    A+V  P  E A
Sbjct: 740 QVSPMDCTGCNLCAETCPAKDKALVMKPFEEIA 772


>gi|262275219|ref|ZP_06053029.1| NAD-dependent formate dehydrogenase alpha subunit [Grimontia
           hollisae CIP 101886]
 gi|262220464|gb|EEY71779.1| NAD-dependent formate dehydrogenase alpha subunit [Grimontia
           hollisae CIP 101886]
          Length = 957

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 2/73 (2%)

Query: 55  RYPNGEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
            +     +CI C  C   C        +    R  +             +C+ CG C +A
Sbjct: 167 YFTFDTSKCIVCSRCVRACDEIQGQHALTVERRGFESRIVAGAESFMASECVSCGACVQA 226

Query: 113 CPVDAIVEGPNFE 125
           CP  A++E    E
Sbjct: 227 CPTAALIENSVIE 239


>gi|288941461|ref|YP_003443701.1| cobyrinic acid ac-diamide synthase [Allochromatium vinosum DSM 180]
 gi|288896833|gb|ADC62669.1| Cobyrinic acid ac-diamide synthase [Allochromatium vinosum DSM 180]
          Length = 296

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 23/64 (35%), Gaps = 11/64 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ERC AC  C  +C   A+ +  G              +    C  CG C   CP  AI
Sbjct: 65  DAERCTACGRCAEVCRFNALAVVGGAVL-----------VFDDLCHGCGRCTWICPEQAI 113

Query: 119 VEGP 122
            E P
Sbjct: 114 HEEP 117


>gi|229523193|ref|ZP_04412600.1| electron transport complex protein RnfB [Vibrio cholerae TM
           11079-80]
 gi|229525629|ref|ZP_04415034.1| electron transport complex protein RnfB [Vibrio cholerae bv.
           albensis VL426]
 gi|229339210|gb|EEO04227.1| electron transport complex protein RnfB [Vibrio cholerae bv.
           albensis VL426]
 gi|229339556|gb|EEO04571.1| electron transport complex protein RnfB [Vibrio cholerae TM
           11079-80]
          Length = 195

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 25/79 (31%), Gaps = 10/79 (12%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103
           S     +         E+ CI C  C   CP  AI   +             + +   +C
Sbjct: 95  SAHDLDDKVKMVAFIHEDMCIGCTKCIQACPVDAIVGGNK----------AVHTVIKNEC 144

Query: 104 IYCGLCQEACPVDAIVEGP 122
             C LC   CP D I   P
Sbjct: 145 TGCDLCVAPCPTDCIEMIP 163


>gi|229584237|ref|YP_002842738.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.16.27]
 gi|228019286|gb|ACP54693.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.16.27]
          Length = 104

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + CIA   C   CP         P      ++   ++     CI+C  C   CPV AI
Sbjct: 42  DFDVCIADGSCITACPVNVFRWFDTPGNPVSEKKADPFN--EQACIFCMACVNVCPVAAI 99

Query: 119 VEGP 122
              P
Sbjct: 100 DVKP 103


>gi|159486358|ref|XP_001701208.1| pyruvate-ferredoxin oxidoreductase [Chlamydomonas reinhardtii]
 gi|158271908|gb|EDO97718.1| pyruvate-ferredoxin oxidoreductase [Chlamydomonas reinhardtii]
          Length = 1181

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 34/113 (30%), Gaps = 18/113 (15%)

Query: 29  KAKTTINYPF--EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA----------- 75
           K   ++  P       T+   +   A +      E C  C +C  +CP            
Sbjct: 666 KLPVSVFSPEGFVPPGTTVIEKRAIAAQVPIWKAENCTQCNICAFVCPHAAIRPALASPA 725

Query: 76  ---QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLCQEACPVDAIVEGPN 123
               A       +        ++Y I      C  C LC  ACP DA+   P 
Sbjct: 726 DLVGAPATFGTIQAKGPGMGDLKYRIQVSPYDCTGCDLCTHACPDDALQSVPI 778


>gi|307945312|ref|ZP_07660648.1| 4Fe-4S ferredoxin, iron-sulfur binding [Roseibium sp. TrichSKD4]
 gi|307771185|gb|EFO30410.1| 4Fe-4S ferredoxin, iron-sulfur binding [Roseibium sp. TrichSKD4]
          Length = 682

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 25/78 (32%), Gaps = 9/78 (11%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C  C  C + CP  A+                +       C+ CGLCQ  CP   I   P
Sbjct: 525 CTLCLSCVSACPVGALADNPD---------QPQVSFTEAACVQCGLCQTTCPESVITLVP 575

Query: 123 NFEFATETRQELYYDKER 140
            F  +    +     +E 
Sbjct: 576 QFNTSETALRAAVLHEEE 593



 Score = 38.2 bits (87), Expect = 0.40,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 17/77 (22%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           C  C   CPA A+T E+G              +D   C  CG C   CP  AI       
Sbjct: 287 CSNCLDACPAGALTSEAGKIA-----------VDHGICGGCGSCSANCPTGAIS------ 329

Query: 126 FATETRQELYYDKERLL 142
           +   +R +L    + L+
Sbjct: 330 YQYPSRPDLLVPIQSLI 346



 Score = 33.9 bits (76), Expect = 7.1,   Method: Composition-based stats.
 Identities = 11/31 (35%), Positives = 15/31 (48%)

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
             R +I    C  C  C  ACPV A+ + P+
Sbjct: 515 YGRIEIRSEGCTLCLSCVSACPVGALADNPD 545


>gi|306819989|ref|ZP_07453640.1| electron transport complex protein RnfB [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304552025|gb|EFM39965.1| electron transport complex protein RnfB [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 340

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 5/72 (6%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV-----RYDIDMIKCIYCGLCQE 111
               ++C+AC  C  +CP   I      +      ++        D   + CI C +C +
Sbjct: 165 HVDRDKCVACGKCIEVCPKSIIEWIPYNQQVYIYCKSREKGKDVKDKCSVGCIGCQMCVK 224

Query: 112 ACPVDAIVEGPN 123
            CP DAI    N
Sbjct: 225 VCPFDAITFENN 236



 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 11/56 (19%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           CI C++C  +CP  AIT E+               I   KC  C  C E CP   I
Sbjct: 216 CIGCQMCVKVCPFDAITFENN-----------LPTIHYEKCKQCNKCVEKCPTKTI 260



 Score = 42.4 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C+    C   C   AI I +    H          +D  KC+ CG C E CP   I
Sbjct: 137 CTYGCMGFGTCVRACKFDAIYIGTDGVAH----------VDRDKCVACGKCIEVCPKSII 186

Query: 119 VEGP 122
              P
Sbjct: 187 EWIP 190


>gi|302390832|ref|YP_003826652.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Acetohalobium arabaticum DSM 5501]
 gi|302202909|gb|ADL11587.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Acetohalobium arabaticum DSM 5501]
          Length = 103

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 26/71 (36%), Gaps = 11/71 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++CI C  C   CP  AI  E                     C  CG+C   CPVDAI
Sbjct: 43  DIDQCINCHRCWIYCPDSAIVSEDEEVTGFDHDY----------CKGCGICAHECPVDAI 92

Query: 119 VEGPNFEFATE 129
                 E +TE
Sbjct: 93  SMIKE-EPSTE 102


>gi|299066971|emb|CBJ38166.1| 4Fe-4S ferredoxin, iron-sulphur binding [Ralstonia solanacearum
           CMR15]
          Length = 268

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 23/64 (35%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ERCI C LC   CP  AI                 + +    C  C LC   CPVD I
Sbjct: 86  DPERCIGCTLCIQACPVDAIVGAPK----------AMHVVLADWCTGCDLCVAPCPVDCI 135

Query: 119 VEGP 122
              P
Sbjct: 136 DMVP 139



 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/21 (66%), Positives = 16/21 (76%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID  +CI C LC +ACPVDAI
Sbjct: 85  IDPERCIGCTLCIQACPVDAI 105


>gi|210623722|ref|ZP_03294006.1| hypothetical protein CLOHIR_01957 [Clostridium hiranonis DSM 13275]
 gi|210153410|gb|EEA84416.1| hypothetical protein CLOHIR_01957 [Clostridium hiranonis DSM 13275]
          Length = 323

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 29/85 (34%), Gaps = 11/85 (12%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93
           +  P  +         +       N    CI C +CE  C   A+ +E+           
Sbjct: 185 VEKPASQEIIVNCNNTQKGKVVKDNCSAGCIGCGICEKNCKFDAVHVENN---------- 234

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAI 118
               ID  KC+ C +C E CP   I
Sbjct: 235 -VAKIDPEKCVGCMVCVEKCPTKVI 258



 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 10/82 (12%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           EK  T          ++    ++ C+ C +C   C   AI+ E            V ++I
Sbjct: 251 EKCPTKVIAGDLAKRQKVTIDKDLCVGCTICAKQCKFDAISGELK----------VAHEI 300

Query: 99  DMIKCIYCGLCQEACPVDAIVE 120
           D  KC+ C LC + CP  AI  
Sbjct: 301 DQDKCVGCHLCMQKCPKKAIKL 322



 Score = 37.8 bits (86), Expect = 0.54,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 5/70 (7%)

Query: 59  GEERCIACKLCEAICPAQ-----AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
            EE+C+ C  C  +CP         + E    C++  +  V  D     CI CG+C++ C
Sbjct: 165 DEEKCVNCGKCREVCPKGLIVEKPASQEIIVNCNNTQKGKVVKDNCSAGCIGCGICEKNC 224

Query: 114 PVDAIVEGPN 123
             DA+    N
Sbjct: 225 KFDAVHVENN 234



 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 11/64 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + C+    C ++C   AI +  G              +D  KC+ CG C+E CP   I
Sbjct: 136 CAQGCLGLGTCVSVCAFDAIHVVDGVAV-----------VDEEKCVNCGKCREVCPKGLI 184

Query: 119 VEGP 122
           VE P
Sbjct: 185 VEKP 188


>gi|159043912|ref|YP_001532706.1| dihydropyrimidine dehydrogenase [Dinoroseobacter shibae DFL 12]
 gi|157911672|gb|ABV93105.1| dihydroorotate dehydrogenase family protein [Dinoroseobacter shibae
           DFL 12]
          Length = 432

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 8/95 (8%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI C  C A C       E              +++   +C+ 
Sbjct: 328 QYLNLNYVTKARIDQDSCIKCGRCYAAC-------EDTSHQAISMSADRVFEVIDAECVA 380

Query: 106 CGLCQEACPV-DAIVEGPNFEFATETRQELYYDKE 139
           C LC   CPV D I          + R     +K+
Sbjct: 381 CNLCVNVCPVEDCITMVEMQPGEVDPRTGKVVEKD 415


>gi|27380595|ref|NP_772124.1| ferredoxin [Bradyrhizobium japonicum USDA 110]
 gi|27353760|dbj|BAC50749.1| blr5484 [Bradyrhizobium japonicum USDA 110]
          Length = 656

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 22/68 (32%), Gaps = 9/68 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C  C  C + CP  A+  +                     C+ CGLCQ  CP   I
Sbjct: 501 DTGGCTLCLSCVSACPTGALRADPE---------RPVLKFVEDACVQCGLCQSTCPEKVI 551

Query: 119 VEGPNFEF 126
              P  +F
Sbjct: 552 TLTPQIDF 559



 Score = 40.5 bits (93), Expect = 0.073,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 19/54 (35%), Gaps = 11/54 (20%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
             C  C  +CP  AIT +                ++   C  CG C  ACP  A
Sbjct: 266 TGCHRCLDLCPTGAITPDGD-----------HVAVNADVCAGCGQCAAACPTGA 308


>gi|116748492|ref|YP_845179.1| methyl-viologen-reducing hydrogenase subunit delta [Syntrophobacter
           fumaroxidans MPOB]
 gi|116697556|gb|ABK16744.1| methyl-viologen-reducing hydrogenase, delta subunit
           [Syntrophobacter fumaroxidans MPOB]
          Length = 739

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 17/92 (18%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            +RC  CK C   CP  AI  +                 +  +C  CG+C  ACP   I 
Sbjct: 530 MQRCTQCKRCTEECPFGAINEDEKANPLP----------NPTRCRRCGVCMGACPERIIS 579

Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESE 151
                 ++      +  +    +   D +E +
Sbjct: 580 FRN---YSVTMIGNMIKN----IQVPDEYEEK 604



 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 32/99 (32%), Gaps = 4/99 (4%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            L + F     I +P+E   T     G              +      A+   Q + + S
Sbjct: 455 TLNHGFPDSHFICFPYESRRTGIYPAGTVRAPMDYAAA---VQDATGAALKAIQCVEMVS 511

Query: 83  GPRCHDGTRRTVRY-DIDMIKCIYCGLCQEACPVDAIVE 120
           G +          Y +  M +C  C  C E CP  AI E
Sbjct: 512 GGKAVHPRAGDTSYPEFFMQRCTQCKRCTEECPFGAINE 550


>gi|325969844|ref|YP_004246036.1| heterodisulfide reductase, subunit A [Vulcanisaeta moutnovskia
           768-28]
 gi|323709047|gb|ADY02534.1| heterodisulfide reductase, subunit A [Vulcanisaeta moutnovskia
           768-28]
          Length = 448

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 7/70 (10%)

Query: 59  GEERCIACKLCEAICPA-------QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            EE C  C  CE +CP          +           T    +  ID+  CI+CG C+ 
Sbjct: 110 NEELCTGCGTCEEVCPVVLPKEYDYGLRGRKAAYIPFDTAVPKKAVIDIDNCIFCGQCER 169

Query: 112 ACPVDAIVEG 121
            CP  AI   
Sbjct: 170 ECPAGAIDFT 179



 Score = 35.5 bits (80), Expect = 2.3,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 3/42 (7%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139
           ++   C  CG C+E CPV        +++    R+  Y   +
Sbjct: 109 VNEELCTGCGTCEEVCPVV---LPKEYDYGLRGRKAAYIPFD 147


>gi|297527527|ref|YP_003669551.1| ABC transporter related protein [Staphylothermus hellenicus DSM
           12710]
 gi|297256443|gb|ADI32652.1| ABC transporter related protein [Staphylothermus hellenicus DSM
           12710]
          Length = 601

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 22/67 (32%), Gaps = 6/67 (8%)

Query: 59  GEERCIA--CK-LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
             E C    C   C   CP      +         +  V   I    CI CG+C + CP 
Sbjct: 8   DREYCKPNKCNLECIRFCPVNKTKHKKAIELSPDGKHAV---IYEDICIGCGICVKKCPF 64

Query: 116 DAIVEGP 122
           +AI    
Sbjct: 65  NAISIVN 71


>gi|283778897|ref|YP_003369652.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pirellula staleyi DSM 6068]
 gi|283437350|gb|ADB15792.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pirellula
           staleyi DSM 6068]
          Length = 718

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 20/64 (31%), Gaps = 14/64 (21%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C  C  ICP  AI  +              +      C  C  C   CP +AI    
Sbjct: 390 CIHCNKCVQICPFDAIKPD--------------FTTRTTDCTLCQTCAGVCPTEAIKFVE 435

Query: 123 NFEF 126
            +  
Sbjct: 436 RWNL 439



 Score = 40.1 bits (92), Expect = 0.095,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 19/63 (30%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C  C   CP   +      +  +G                C  C + CP  AI   P
Sbjct: 512 CIRCGECFKACPNNVLQPLGFEQGLEGLWTPAAKPDWAGCESSCNACGQVCPTGAIRAIP 571

Query: 123 NFE 125
             E
Sbjct: 572 LEE 574



 Score = 39.3 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 9/57 (15%)

Query: 68  LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
            C+ +CP+ A+   S        +           CI+C  C + CP DAI   P+F
Sbjct: 362 WCKYVCPSGAVFSVSNLFRATERKV-------ESSCIHCNKCVQICPFDAIK--PDF 409


>gi|260769053|ref|ZP_05877987.1| electron transport complex protein RnfB [Vibrio furnissii CIP
           102972]
 gi|260617083|gb|EEX42268.1| electron transport complex protein RnfB [Vibrio furnissii CIP
           102972]
 gi|315180794|gb|ADT87708.1| electron transport complex protein RnfB [Vibrio furnissii NCTC
           11218]
          Length = 199

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 29/91 (31%), Gaps = 10/91 (10%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103
           S     ++        E+ CI C  C   CP  AI   +             + +   +C
Sbjct: 95  SAHDLDDNVKTVAFIHEDMCIGCTKCIQACPVDAIVGGNK----------ALHTVIKDEC 144

Query: 104 IYCGLCQEACPVDAIVEGPNFEFATETRQEL 134
             C LC   CP D I   P        + ++
Sbjct: 145 TGCDLCVAPCPTDCIEMIPVKTTTDTWKWQM 175


>gi|260768415|ref|ZP_05877349.1| iron-sulfur cluster-binding protein [Vibrio furnissii CIP 102972]
 gi|260616445|gb|EEX41630.1| iron-sulfur cluster-binding protein [Vibrio furnissii CIP 102972]
          Length = 553

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 9/75 (12%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             C  C  C A+CP +A+  E                     C+ CGLC +ACP +A+  
Sbjct: 418 TDCTLCMSCVAVCPTRALHHEGDLPS---------LKFVEQDCVQCGLCVKACPENALTA 468

Query: 121 GPNFEFATETRQELY 135
                +    RQ + 
Sbjct: 469 VQQLNWNAAQRQSVV 483



 Score = 40.1 bits (92), Expect = 0.091,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 6/54 (11%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           C  C   CPA A++ E   +         R  I+   C   G C  +CP +AI 
Sbjct: 186 CDRCVDACPAGALSSEGSEQTGH------RIQINPYLCQGVGTCATSCPTEAIH 233


>gi|212224463|ref|YP_002307699.1| indolepyruvate: ferredoxin oxidoreductase, alpha subunit
           [Thermococcus onnurineus NA1]
 gi|212009420|gb|ACJ16802.1| indolepyruvate: ferredoxin oxidoreductase, alpha subunit
           [Thermococcus onnurineus NA1]
          Length = 648

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 9/79 (11%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R       Y   EE+C  CK+C       AI  ++          + +  +D + C  CG
Sbjct: 579 RAGIKWPLYQVNEEKCTGCKICINAYGCPAIYWDAE---------SGKAKVDPLMCWGCG 629

Query: 108 LCQEACPVDAIVEGPNFEF 126
            C + CP DA  +    E 
Sbjct: 630 GCAQVCPFDAFEKVREGEL 648


>gi|170289699|ref|YP_001736515.1| indolepyruvate ferredoxin oxidoreductase, alpha and beta subunit
           [Candidatus Korarchaeum cryptofilum OPF8]
 gi|170173779|gb|ACB06832.1| Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunit
           [Candidatus Korarchaeum cryptofilum OPF8]
          Length = 649

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 11/68 (16%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             +  Y   +++C  C++C       A                   +ID   C  CG C 
Sbjct: 577 KKIVPYRVNKDKCTYCRVCINTFACPAFVDTG-----------SSVEIDPAICFGCGACV 625

Query: 111 EACPVDAI 118
           + CP DAI
Sbjct: 626 QVCPYDAI 633


>gi|189423641|ref|YP_001950818.1| electron transfer flavoprotein subunit alpha [Geobacter lovleyi SZ]
 gi|189419900|gb|ACD94298.1| Electron transfer flavoprotein alpha subunit [Geobacter lovleyi SZ]
          Length = 443

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 31/83 (37%), Gaps = 16/83 (19%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACK-LCEAICPAQAITIESGPRCHDGTRRTVRYD 97
           E      + RG   L      E +CIAC   CE+ CP   I++                 
Sbjct: 3   ENTPKIKKPRGRARLL-----EGKCIACGARCESSCPVNCISMNEAGEPV---------- 47

Query: 98  IDMIKCIYCGLCQEACPVDAIVE 120
           +D  KCI C  C + CP  A+  
Sbjct: 48  VDTEKCIGCLKCVKVCPAQALEM 70


>gi|78357189|ref|YP_388638.1| iron-sulfur cluster-binding protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78219594|gb|ABB38943.1| iron-sulfur cluster-binding protein [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 146

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 9/69 (13%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
              +R    E+ C+ C +C AICP  A+ ++   R             D  +C  CGLC 
Sbjct: 79  PVDQRISRDEDSCMHCGMCTAICPVDALHMDWVARTV---------TFDTERCTACGLCT 129

Query: 111 EACPVDAIV 119
           + CPV A+ 
Sbjct: 130 KVCPVRAMH 138


>gi|326560090|gb|EGE10480.1| RnfABCDGE type electron transport complex subunit B [Moraxella
           catarrhalis 46P47B1]
 gi|326564196|gb|EGE14432.1| RnfABCDGE type electron transport complex subunit B [Moraxella
           catarrhalis 12P80B1]
          Length = 275

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 28/100 (28%), Gaps = 12/100 (12%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            +       T    P +        R +    R    E  CI C  C   CP  AI   +
Sbjct: 80  TIANILNKPTKPATPSQWQIDPLTNRPKEV--RAIIQEADCIGCTKCIPACPVDAIVGTA 137

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                          I    C  C LC   CPVD I   P
Sbjct: 138 KHMHS----------IITDLCTGCELCLAPCPVDCIDVIP 167


>gi|323698974|ref|ZP_08110886.1| nitroreductase [Desulfovibrio sp. ND132]
 gi|323458906|gb|EGB14771.1| nitroreductase [Desulfovibrio desulfuricans ND132]
          Length = 272

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 7/66 (10%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           +   E RC    LC A CPA  I  E G       ++          C+ CG C   CP 
Sbjct: 4   FIIDETRCRRDGLCAADCPAGCIVFEEGGLPEPHEKKQ-------AYCLDCGHCMAVCPA 56

Query: 116 DAIVEG 121
           DAI   
Sbjct: 57  DAIRLT 62


>gi|302339761|ref|YP_003804967.1| hydrogenase large subunit domain protein [Spirochaeta smaragdinae
           DSM 11293]
 gi|301636946|gb|ADK82373.1| hydrogenase large subunit domain protein [Spirochaeta smaragdinae
           DSM 11293]
          Length = 504

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110
              +++CI C  C  +CP  AIT    P         +  D      ID   C+ CGLC 
Sbjct: 156 HIDQDKCIKCMKCVQVCPYSAITRMVRPCAEACGVGAIDSDEEGFARIDQKVCVSCGLCT 215

Query: 111 EACPVDAI 118
            +CP  AI
Sbjct: 216 VSCPFGAI 223



 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 5/61 (8%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-----DIDMIKCIYCGLCQEACPVDA 117
           C  C   E I   +  +  + P      R  + +      ID  KCI C  C + CP  A
Sbjct: 117 CEKCPEDEVIVTDKCQSCMAHPCSIVCPRNAITFPEGKAHIDQDKCIKCMKCVQVCPYSA 176

Query: 118 I 118
           I
Sbjct: 177 I 177


>gi|296113097|ref|YP_003627035.1| RnfABCDGE type electron transport complex subunit B [Moraxella
           catarrhalis RH4]
 gi|295920791|gb|ADG61142.1| RnfABCDGE type electron transport complex subunit B [Moraxella
           catarrhalis RH4]
 gi|326560473|gb|EGE10855.1| RnfABCDGE type electron transport complex subunit B [Moraxella
           catarrhalis 7169]
 gi|326565795|gb|EGE15957.1| RnfABCDGE type electron transport complex subunit B [Moraxella
           catarrhalis BC1]
 gi|326570448|gb|EGE20488.1| RnfABCDGE type electron transport complex subunit B [Moraxella
           catarrhalis BC8]
 gi|326571131|gb|EGE21155.1| RnfABCDGE type electron transport complex subunit B [Moraxella
           catarrhalis BC7]
 gi|326577145|gb|EGE27039.1| RnfABCDGE type electron transport complex subunit B [Moraxella
           catarrhalis O35E]
          Length = 275

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 28/100 (28%), Gaps = 12/100 (12%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            +       T    P +        R +    R    E  CI C  C   CP  AI   +
Sbjct: 80  TIANILNKPTKPATPSQWQIDPLTNRPKEV--RAIIQEADCIGCTKCIPACPVDAIVGTA 137

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                          I    C  C LC   CPVD I   P
Sbjct: 138 KHMHS----------IITDLCTGCELCLAPCPVDCIDVIP 167


>gi|229829138|ref|ZP_04455207.1| hypothetical protein GCWU000342_01223 [Shuttleworthia satelles DSM
           14600]
 gi|229792301|gb|EEP28415.1| hypothetical protein GCWU000342_01223 [Shuttleworthia satelles DSM
           14600]
          Length = 281

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 12/100 (12%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
                P++          +   +     +  CIAC +CE  C   A+ + +         
Sbjct: 185 IIEMIPYDSSYAVSCISEDKGPKVGKVCKAGCIACHMCEKACEYDAVHVVNNIAH----- 239

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
                 ID  KC+ CG C + CP   I+   N   A + R
Sbjct: 240 ------IDQSKCVGCGKCADKCPKKVILMQ-NVPLAEQNR 272



 Score = 35.1 bits (79), Expect = 3.2,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 22/64 (34%), Gaps = 11/64 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C+    C   CP  AI I  G              +D  KC  CG C  ACP D I
Sbjct: 138 CSYGCLGLGTCVRACPFDAIHIVDGISF-----------VDREKCKACGKCVAACPRDII 186

Query: 119 VEGP 122
              P
Sbjct: 187 EMIP 190


>gi|212223876|ref|YP_002307112.1| putative ATPase RIL [Thermococcus onnurineus NA1]
 gi|212008833|gb|ACJ16215.1| Hypothetical ATPase [Thermococcus onnurineus NA1]
          Length = 591

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 22/73 (30%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +R      ++C   K    +C         G           R  I    C  CG+C   
Sbjct: 1   MRIAVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYRPIIQEASCTGCGICVHK 60

Query: 113 CPVDAIVEGPNFE 125
           CP +AI      E
Sbjct: 61  CPFNAITIINLPE 73


>gi|116235050|dbj|BAF34974.1| trichloroethene reductive dehalogenase [uncultured Dehalococcoides
           sp.]
          Length = 554

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 3/60 (5%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID---MIKCIYCGLCQEACPVD 116
            E C  C +C   CP QAI+ E              Y+       KCI C  C+  CP  
Sbjct: 434 REFCKTCGICAEHCPTQAISHEGPRYDSPHWDCVSGYEGWHLDYHKCINCTNCEAFCPFF 493



 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 103 CIYCGLCQEACPVDAI-VEGPNFE 125
           C  CG+C E CP  AI  EGP ++
Sbjct: 437 CKTCGICAEHCPTQAISHEGPRYD 460


>gi|53802984|ref|YP_115216.1| electron transport complex subunit C [Methylococcus capsulatus str.
           Bath]
 gi|53756745|gb|AAU91036.1| electron transport complex, C subunit [Methylococcus capsulatus
           str. Bath]
          Length = 495

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 5/106 (4%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           +  + CI C  C + CPA  + +E   R   G   +      +  CI CG C   CP   
Sbjct: 374 SDAKACIRCARCVSACPAGLLPLEMVARIRAGQLESAIG-YGLKDCISCGSCSYVCP-SE 431

Query: 118 IVEGPNFEFAT---ETRQELYYDKERLLNNGDRWESEIVRNIVTDS 160
           I     F++A+     R+++ +  E+     +  ++   R     +
Sbjct: 432 IPLVHYFKYASGELVAREQMKHRTEQTKRLAEERQARFERQKREQA 477


>gi|71906800|ref|YP_284387.1| electron transport complex protein RnfC [Dechloromonas aromatica
           RCB]
 gi|71846421|gb|AAZ45917.1| Electron transport complex, RnfABCDGE type, C subunit
           [Dechloromonas aromatica RCB]
          Length = 570

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 26/97 (26%), Gaps = 6/97 (6%)

Query: 36  YPFEKGSTSPRFRGEHA----LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            P  K           A    L      E  CI C  C   CP +    E          
Sbjct: 340 VPDTKAPVVKATNCLIAHSPTLFPPKPPEMPCIRCGECARACPHELQPFEMY-WFSRAKN 398

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
                +  +  CI CG C   CP   I     F FA 
Sbjct: 399 FGKTQEYAIFDCIECGCCSFVCP-SRIPLVQYFRFAK 434



 Score = 35.5 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 5/44 (11%)

Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGD 146
           CI CG C  ACP     E   FE    +R +  + K +     D
Sbjct: 371 CIRCGECARACP----HELQPFEMYWFSRAKN-FGKTQEYAIFD 409


>gi|51245051|ref|YP_064935.1| pyruvate synthase, gamma subunit [Desulfotalea psychrophila LSv54]
 gi|50876088|emb|CAG35928.1| probable pyruvate synthase, gamma subunit [Desulfotalea
           psychrophila LSv54]
          Length = 309

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 21/61 (34%), Gaps = 12/61 (19%)

Query: 59  GEERCIACKL-CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
             +RC  C   C   CP  AI             R    +ID   C  C +C   CP  A
Sbjct: 245 DYQRCKGCWWICSTFCPDGAI-----------PVRGKIPEIDYDHCKGCMICVAQCPTHA 293

Query: 118 I 118
           I
Sbjct: 294 I 294


>gi|114047406|ref|YP_737956.1| electron transport complex protein RnfB [Shewanella sp. MR-7]
 gi|123030634|sp|Q0HVF6|RNFB_SHESR RecName: Full=Electron transport complex protein rnfB
 gi|113888848|gb|ABI42899.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           sp. MR-7]
          Length = 193

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 25/72 (34%), Gaps = 10/72 (13%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
              +     E+ CI C  C   CP  AI               + + +    C  C LC 
Sbjct: 102 QVKKVAYIREDECIGCTKCIQACPVDAIIGAGK----------LMHTVLTADCTGCDLCV 151

Query: 111 EACPVDAIVEGP 122
           E CPVD I   P
Sbjct: 152 EPCPVDCIDMIP 163


>gi|94311696|ref|YP_584906.1| 4Fe-4S ferredoxin [Cupriavidus metallidurans CH34]
 gi|93355548|gb|ABF09637.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Cupriavidus
           metallidurans CH34]
          Length = 726

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 9/64 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              RC  C  C   CP QA+   +         R          C+ CGLC++ CP DAI
Sbjct: 591 DTARCTLCMACVGACPTQALRDNAERPVLAFVERN---------CVQCGLCEKTCPEDAI 641

Query: 119 VEGP 122
              P
Sbjct: 642 TLVP 645



 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 7/64 (10%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           +G  +   C  C  IC  QAI+               R ++    C+ CG C   CP  A
Sbjct: 337 HGRNQTTGCTACIDICSTQAIS-------SHWRDGKGRIEVTPNLCMGCGACTTVCPSGA 389

Query: 118 IVEG 121
           I  G
Sbjct: 390 ISYG 393



 Score = 37.0 bits (84), Expect = 0.91,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 12/29 (41%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
           ID+  C  C  C  ACP  AI      + 
Sbjct: 217 IDLDLCTRCNACIAACPEQAIDFSYQIDL 245



 Score = 33.9 bits (76), Expect = 7.2,   Method: Composition-based stats.
 Identities = 8/22 (36%), Positives = 11/22 (50%)

Query: 97  DIDMIKCIYCGLCQEACPVDAI 118
            +D  +C  C  C  ACP  A+
Sbjct: 589 QVDTARCTLCMACVGACPTQAL 610


>gi|332525143|ref|ZP_08401320.1| electron transport complex, RnfABCDGE type, C subunit [Rubrivivax
           benzoatilyticus JA2]
 gi|332108429|gb|EGJ09653.1| electron transport complex, RnfABCDGE type, C subunit [Rubrivivax
           benzoatilyticus JA2]
          Length = 462

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 23/82 (28%), Gaps = 1/82 (1%)

Query: 47  FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
           FR E    R       CI C  C   CP        G          +     + +C  C
Sbjct: 363 FRREDMAERDDRRTYPCIKCGQCVESCPMGLNPSALGMLAAKREYDEMGAHYHLGECFEC 422

Query: 107 GLCQEACPVDAIVEGPNFEFAT 128
           G C   CP   I     F  A 
Sbjct: 423 GCCTYVCP-SNIPLVQQFRVAK 443


>gi|323691810|ref|ZP_08106067.1| Pyruvate:ferredoxin oxidoreductase [Clostridium symbiosum
           WAL-14673]
 gi|323504176|gb|EGB19981.1| Pyruvate:ferredoxin oxidoreductase [Clostridium symbiosum
           WAL-14673]
          Length = 1176

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 24/80 (30%), Gaps = 14/80 (17%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITI----ESGPRCHDGTR---------RTV 94
           RG        N  + CI C  C  +CP   I      E      +G +            
Sbjct: 680 RGIAVNVPVWN-PDNCIQCNFCSYVCPHAVIRPVALTEEEAAGAEGMKTLPMTGMPQYKF 738

Query: 95  RYDIDMIKCIYCGLCQEACP 114
              I  + C  CG C   CP
Sbjct: 739 AMTISALDCTGCGSCANVCP 758


>gi|307130992|ref|YP_003883008.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Dickeya dadantii 3937]
 gi|306528521|gb|ADM98451.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Dickeya dadantii 3937]
          Length = 196

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 24/84 (28%), Gaps = 10/84 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E          +         E+ CI C  C   CP  AI   +             + +
Sbjct: 92  EPQPLDAEAPQKPEPLVAWVDEDNCIGCTKCIQACPVDAIVGTT----------RAVHTV 141

Query: 99  DMIKCIYCGLCQEACPVDAIVEGP 122
               C  C LC   CP D I   P
Sbjct: 142 IRDLCTGCNLCVPPCPTDCIELRP 165


>gi|289522358|ref|ZP_06439212.1| putative pyridine nucleotide-disulphide oxidoreductase
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289504194|gb|EFD25358.1| putative pyridine nucleotide-disulfide oxidoreductase
           [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 1077

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 5/80 (6%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDMIKC 103
           R E  L+ +    ++CI C  C   C       AI   S           ++  +D  +C
Sbjct: 597 RLEEKLKYFDRNMDKCILCGRCVRTCDEIVGLHAIDFVSRGFVSTIHDAYMKP-LDESEC 655

Query: 104 IYCGLCQEACPVDAIVEGPN 123
             CGLC + CPV A+ E   
Sbjct: 656 TGCGLCVQLCPVGALTEKRI 675



 Score = 37.8 bits (86), Expect = 0.55,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 28/86 (32%), Gaps = 10/86 (11%)

Query: 38  FEKGSTS-PRFRGEHALRRYPNGEERCIACKL-----CE---AICPAQA-ITIESGPRCH 87
            E+       F       +      RC+ C       C+        +A  T  SG R  
Sbjct: 537 EERLEKPFEEFNMGLTEEQVKIDASRCMECGCPDVFECKLRSYSIEYEASPTRLSGERIK 596

Query: 88  DGTRRTVRYDIDMIKCIYCGLCQEAC 113
               +   +D +M KCI CG C   C
Sbjct: 597 RLEEKLKYFDRNMDKCILCGRCVRTC 622



 Score = 34.7 bits (78), Expect = 4.0,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 18/55 (32%), Gaps = 7/55 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
            E  C  C LC  +CP  A+T            R    +I       CG C   C
Sbjct: 651 DESECTGCGLCVQLCPVGALT-------EKRIERWPHSEIPTATKTTCGECSLGC 698


>gi|262402645|ref|ZP_06079206.1| electron transport complex protein RnfB [Vibrio sp. RC586]
 gi|262351427|gb|EEZ00560.1| electron transport complex protein RnfB [Vibrio sp. RC586]
          Length = 195

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 24/80 (30%), Gaps = 10/80 (12%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103
           S               E+ CI C  C   CP  AI   +             + +   +C
Sbjct: 95  SAHDLDNKVKMVAFIHEDMCIGCTKCIQACPVDAIVGGNK----------ALHTVIKNEC 144

Query: 104 IYCGLCQEACPVDAIVEGPN 123
             C LC   CP D I   P 
Sbjct: 145 TGCDLCVAPCPTDCIEMIPI 164


>gi|294874083|ref|XP_002766836.1| pyruvate:ferredoxin oxidoreductase, putative [Perkinsus marinus
           ATCC 50983]
 gi|239868096|gb|EEQ99553.1| pyruvate:ferredoxin oxidoreductase, putative [Perkinsus marinus
           ATCC 50983]
          Length = 842

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 30/94 (31%), Gaps = 19/94 (20%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAI---------------TIESGPRCHDGTRRTVR 95
            AL       ++C  C +C   CP   I               T +S           + 
Sbjct: 739 VALMIPIVDMDKCTQCNICSMSCPHACIRPFLLSQAEDDAKPSTFDSRKAKGGAEVAGLH 798

Query: 96  YDID--MIKCIYCGLCQEACPVDAIVEGP--NFE 125
           Y I    + C  C  C  ACP DA+      +FE
Sbjct: 799 YRIQVSPLDCTGCETCVNACPYDALRMEHLADFE 832


>gi|229825402|ref|ZP_04451471.1| hypothetical protein GCWU000182_00758 [Abiotrophia defectiva ATCC
           49176]
 gi|229790406|gb|EEP26520.1| hypothetical protein GCWU000182_00758 [Abiotrophia defectiva ATCC
           49176]
          Length = 317

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 29/88 (32%), Gaps = 17/88 (19%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L  Y     +C++C  C   C       ++                    CI CG C + 
Sbjct: 239 LLHYNVDFNKCVSCGKCAKTCKMDVDITKNDAHME---------------CIRCGECVKV 283

Query: 113 CPVDAI--VEGPNFEFATETRQELYYDK 138
           CP  AI    GP      E  +EL  +K
Sbjct: 284 CPTKAISVNWGPEKMKLLEKARELNKNK 311


>gi|256827981|ref|YP_003156709.1| NADH dehydrogenase (quinone) [Desulfomicrobium baculatum DSM 4028]
 gi|256577157|gb|ACU88293.1| NADH dehydrogenase (quinone) [Desulfomicrobium baculatum DSM 4028]
          Length = 612

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 27/68 (39%), Gaps = 10/68 (14%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            AL ++   E RC  C LC   CPA A+                   ID  KC+ C  C 
Sbjct: 554 VALLKFEVDESRCRKCGLCHKACPAGAVIWAKKQTA----------RIDREKCVRCLACF 603

Query: 111 EACPVDAI 118
            ACP D I
Sbjct: 604 SACPFDCI 611



 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 20/42 (47%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            I             +++++D  +C  CGLC +ACP  A++ 
Sbjct: 542 HIMDKRCPAKRCVALLKFEVDESRCRKCGLCHKACPAGAVIW 583


>gi|225572688|ref|ZP_03781443.1| hypothetical protein RUMHYD_00877 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039924|gb|EEG50170.1| hypothetical protein RUMHYD_00877 [Blautia hydrogenotrophica DSM
           10507]
          Length = 173

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 8/59 (13%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           I C  CE+ C   AI I        G + T    I+  KC  CGLC  ACP  AI    
Sbjct: 42  IPCNPCESACRFHAIHI--------GEQITNLPCIEEEKCTGCGLCVAACPGLAITIVD 92


>gi|218885650|ref|YP_002434971.1| glutamate synthase (NADPH) [Desulfovibrio vulgaris str. 'Miyazaki
           F']
 gi|218756604|gb|ACL07503.1| Glutamate synthase (NADPH) [Desulfovibrio vulgaris str. 'Miyazaki
           F']
          Length = 507

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 9/64 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              RCI C++C   C  +A   +   +             D  +C+ C  C   CP   +
Sbjct: 18  ERARCINCEVCVRQCSYEAHFWDEARQFVV---------HDSARCVGCHRCAAMCPTSCL 68

Query: 119 VEGP 122
               
Sbjct: 69  TIRK 72


>gi|167768984|ref|ZP_02441037.1| hypothetical protein ANACOL_00305 [Anaerotruncus colihominis DSM
           17241]
 gi|167668624|gb|EDS12754.1| hypothetical protein ANACOL_00305 [Anaerotruncus colihominis DSM
           17241]
          Length = 976

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 23/73 (31%), Gaps = 2/73 (2%)

Query: 43  TSPRFRGEHALRRYP-NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
            +P  R   A      N    CI C  C   CP          R     R  +   +D  
Sbjct: 255 VTPSTRAILAFHEDFKNLNIGCIGCSRCAHACPEGLNPFYLY-RSIQNRRYGLFRVLDAQ 313

Query: 102 KCIYCGLCQEACP 114
            CI CG C   CP
Sbjct: 314 MCIGCGTCSYVCP 326


>gi|148643058|ref|YP_001273571.1| polyferredoxin, MvhB [Methanobrevibacter smithii ATCC 35061]
 gi|148552075|gb|ABQ87203.1| polyferredoxin, MvhB [Methanobrevibacter smithii ATCC 35061]
          Length = 413

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           CI C LC   CP  A+   +  +     +    +D+++ KCI C  C EACP D I
Sbjct: 177 CIKCGLCSQTCPWNAVF-IAEKKPAKRAKTINAFDLELSKCIGCNTCVEACPGDFI 231



 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTV-RYDIDMIKCIYCGLCQEACPVDAI 118
              CI C  C A+C   A+++ S  +  DG   T  R + +  KC  CG C EACP + +
Sbjct: 322 FASCIRCGACAAVCSNDALSVGSIEKVIDGETVTRDRIEFNPYKCNECGDCIEACPYNML 381

Query: 119 VEGPN 123
               N
Sbjct: 382 HATGN 386



 Score = 40.9 bits (94), Expect = 0.060,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 62  RCIACKLCEAICPAQAITIES-GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            C+ C+ C  ICP   I I        +      +  I +  C+ CG C + CPV AI  
Sbjct: 104 FCVMCQKCVDICPVDVIGIPGIVEPKGEVIDLDGKGSIYINDCVGCGTCVDPCPVSAITL 163

Query: 121 GPN 123
              
Sbjct: 164 DEI 166



 Score = 38.2 bits (87), Expect = 0.39,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 19/61 (31%), Gaps = 11/61 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              +C  C  C   CP   +      +              M  C  CG C +ACP  A+
Sbjct: 362 NPYKCNECGDCIEACPYNMLHATGNEKFPI-----------MGFCTLCGQCIDACPKHAL 410

Query: 119 V 119
            
Sbjct: 411 Y 411



 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 62  RCIACK---LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            C  C     C  +CP  A+ +E+      G    +R   +   C  CG C+EACP D I
Sbjct: 33  HCDTCGGEPKCADVCPEGALKVETYSIAE-GAEEQIRLVFNSTLCNSCGKCEEACPQDTI 91

Query: 119 VEGPN 123
               N
Sbjct: 92  KLTGN 96



 Score = 35.5 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 25/90 (27%), Gaps = 11/90 (12%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           K  T     G     R       C +C  CE  CP   I +                   
Sbjct: 53  KVETYSIAEGAEEQIRLVFNSTLCNSCGKCEEACPQDTIKLTGNDLMEV----------- 101

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
              C+ C  C + CPVD I      E   E
Sbjct: 102 EGFCVMCQKCVDICPVDVIGIPGIVEPKGE 131



 Score = 35.5 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 9/60 (15%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             C+ C  C   CP  AIT++                I    CI CGLC + CP +A+  
Sbjct: 144 NDCVGCGTCVDPCPVSAITLDE---------IGGTISIADDVCIKCGLCSQTCPWNAVFI 194



 Score = 35.1 bits (79), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 18/56 (32%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
              E+C     C   CP +AI + +              +     CI CG C   C
Sbjct: 280 YDAEKCDFVGACANKCPTEAIRVVTKTGMLCPALEETDAEPSFASCIRCGACAAVC 335



 Score = 33.9 bits (76), Expect = 7.2,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 12/24 (50%)

Query: 99  DMIKCIYCGLCQEACPVDAIVEGP 122
           +   CI CG C+  CP  AI   P
Sbjct: 5   NEDGCIRCGACEGTCPTSAIDVTP 28


>gi|148270023|ref|YP_001244483.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermotoga petrophila RKU-1]
 gi|147735567|gb|ABQ46907.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermotoga
           petrophila RKU-1]
          Length = 357

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 14/70 (20%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E+C+AC  C   CP  AIT+    +            ID  KCI CG C   C   A   
Sbjct: 193 EKCVACGTCAKFCPVGAITVTKVAK------------IDYEKCIGCGQCIAMCSYGA--M 238

Query: 121 GPNFEFATET 130
            P ++ +T++
Sbjct: 239 SPKWDSSTDS 248



 Score = 35.5 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 14/36 (38%)

Query: 87  HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                   +  +   KC+ CG C + CPV AI    
Sbjct: 179 KMEQHSESKPYVVEEKCVACGTCAKFCPVGAITVTK 214


>gi|153000588|ref|YP_001366269.1| electron transport complex protein RnfB [Shewanella baltica OS185]
 gi|160875224|ref|YP_001554540.1| electron transport complex protein RnfB [Shewanella baltica OS195]
 gi|217973445|ref|YP_002358196.1| electron transport complex protein RnfB [Shewanella baltica OS223]
 gi|304408662|ref|ZP_07390283.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           baltica OS183]
 gi|307305491|ref|ZP_07585239.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           baltica BA175]
 gi|151365206|gb|ABS08206.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           baltica OS185]
 gi|160860746|gb|ABX49280.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           baltica OS195]
 gi|217498580|gb|ACK46773.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           baltica OS223]
 gi|304352483|gb|EFM16880.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           baltica OS183]
 gi|306911794|gb|EFN42219.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           baltica BA175]
 gi|315267417|gb|ADT94270.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           baltica OS678]
          Length = 204

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 25/72 (34%), Gaps = 10/72 (13%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
              +     E+ CI C  C   CP  AI               + + +    C  C LC 
Sbjct: 102 QVKKVAYIREDECIGCTKCIQACPVDAIIGAGK----------LMHTVLTTDCTGCDLCV 151

Query: 111 EACPVDAIVEGP 122
           E CPVD I   P
Sbjct: 152 EPCPVDCIDMIP 163


>gi|126090183|ref|YP_001041664.1| electron transport complex protein RnfB [Shewanella baltica OS155]
 gi|126174476|ref|YP_001050625.1| electron transport complex protein RnfB [Shewanella baltica OS155]
 gi|125997681|gb|ABN61756.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           baltica OS155]
 gi|125999839|gb|ABN63909.1| hypothetical protein Sbal_4546 [Shewanella baltica OS155]
          Length = 199

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 25/72 (34%), Gaps = 10/72 (13%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
              +     E+ CI C  C   CP  AI               + + +    C  C LC 
Sbjct: 102 QVKKVAYIREDECIGCTKCIQACPVDAIIGAGK----------LMHTVLTTDCTGCDLCV 151

Query: 111 EACPVDAIVEGP 122
           E CPVD I   P
Sbjct: 152 EPCPVDCIDMIP 163


>gi|332528400|ref|ZP_08404394.1| RnfABCDGE type electron transport complex subunit B [Hylemonella
           gracilis ATCC 19624]
 gi|332042163|gb|EGI78495.1| RnfABCDGE type electron transport complex subunit B [Hylemonella
           gracilis ATCC 19624]
          Length = 248

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 27/70 (38%), Gaps = 10/70 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +      E+ CI C LC   CP  AI          G  + +   ID   C  C LC   
Sbjct: 79  MTVAVIDEDWCIGCTLCLKACPTDAI---------LGGNKHMHTVID-AYCTGCELCIPV 128

Query: 113 CPVDAIVEGP 122
           CPVD I   P
Sbjct: 129 CPVDCIHMEP 138



 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 16/36 (44%)

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
                ID   CI C LC +ACP DAI+ G       
Sbjct: 79  MTVAVIDEDWCIGCTLCLKACPTDAILGGNKHMHTV 114


>gi|330837744|ref|YP_004412385.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Spirochaeta
           coccoides DSM 17374]
 gi|329749647|gb|AEC03003.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Spirochaeta
           coccoides DSM 17374]
          Length = 1178

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 27/94 (28%), Gaps = 19/94 (20%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIES----------------GPRCHDGTR 91
           RG      +    E CI C  C   CP  AI  +                      +   
Sbjct: 675 RGVAPFIPHWI-AESCIQCNQCVQSCPHAAIRAKQIDPALLADAPEGFITLKSNTKNDKN 733

Query: 92  RTVRYDIDMIKCIYCGLCQEACP--VDAIVEGPN 123
              +  I    C  CG+C E CP    A+   P 
Sbjct: 734 LQFKIQIYTEDCQGCGVCIETCPAKTKALEFSPI 767


>gi|260655399|ref|ZP_05860887.1| iron-sulfur cluster-binding protein [Jonquetella anthropi E3_33 E1]
 gi|260629847|gb|EEX48041.1| iron-sulfur cluster-binding protein [Jonquetella anthropi E3_33 E1]
          Length = 387

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 10/75 (13%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            E CIAC  C   CP +AI++++    +          ID  KCI C  C   CPV AI 
Sbjct: 213 PEECIACGRCARNCPVRAISMKNPAGANKAF-------IDQSKCIGCSECMTHCPVSAIS 265

Query: 120 EGPNFEFATETRQEL 134
                E   E R   
Sbjct: 266 IDWGSE---EDRSAF 277


>gi|253577805|ref|ZP_04855077.1| CoB-CoM heterodisulfide reductase subunit A [Ruminococcus sp.
           5_1_39B_FAA]
 gi|251850123|gb|EES78081.1| CoB-CoM heterodisulfide reductase subunit A [Ruminococcus sp.
           5_1_39BFAA]
          Length = 662

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-DIDMIKCIYCGLCQEACPV 115
            + E  C  C  C  +CP  AI+ E       G R T R   ++   C  CG C  ACP 
Sbjct: 581 KSDELLCNGCSTCANVCPYGAISYEDKQVNDHGIRETRRVAVVNTALCQGCGACTVACPS 640

Query: 116 DAIVEG 121
            A+   
Sbjct: 641 GAMDLQ 646



 Score = 33.9 bits (76), Expect = 7.1,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 14/22 (63%)

Query: 98  IDMIKCIYCGLCQEACPVDAIV 119
           ++M KC  CG+CQE CP   I 
Sbjct: 238 VNMDKCTGCGVCQEKCPSKKIP 259


>gi|189465837|ref|ZP_03014622.1| hypothetical protein BACINT_02199 [Bacteroides intestinalis DSM
           17393]
 gi|189434101|gb|EDV03086.1| hypothetical protein BACINT_02199 [Bacteroides intestinalis DSM
           17393]
          Length = 373

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 10/65 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E CI C +C   C   A+ + +G +            ID  KC+ CG C   C  D  
Sbjct: 192 DTENCIGCNICVKHCAHDAVHLNAGRKAE----------IDYAKCVGCGQCVALCQYDGA 241

Query: 119 VEGPN 123
           + G  
Sbjct: 242 IMGDE 246


>gi|187778076|ref|ZP_02994549.1| hypothetical protein CLOSPO_01668 [Clostridium sporogenes ATCC
           15579]
 gi|187775004|gb|EDU38806.1| hypothetical protein CLOSPO_01668 [Clostridium sporogenes ATCC
           15579]
          Length = 321

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 22/88 (25%), Gaps = 8/88 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +         G   +      + RCI C  C   C                     +
Sbjct: 145 CPNDCIKARMHDFGILGMTEPQYDKYRCIGCMACVNNC--------KKRVTGALRFENFK 196

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPN 123
              D  KCI CG C   CP  A      
Sbjct: 197 VIRDHEKCIGCGECVGKCPTGAWTRSKE 224


>gi|10639342|emb|CAC11344.1| conserved hypothetical protein [Thermoplasma acidophilum]
          Length = 637

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 28/86 (32%), Gaps = 15/86 (17%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVR-----------YDIDMIKCIYCGLCQE 111
           C  C  CE  CPA A      PR      +               +     C  C  C E
Sbjct: 265 CTDCGRCERACPAYASGTGLDPRAVVQNLKKTVGTETDLVPVILTENAAWSCTTCMACVE 324

Query: 112 ACPVDAIVEGPNFEFATETRQELYYD 137
            CPV        + F TETR+ L  +
Sbjct: 325 ECPV----LIRPYNFVTETRRNLVME 346


>gi|297578622|ref|ZP_06940550.1| conserved hypothetical protein [Vibrio cholerae RC385]
 gi|297536216|gb|EFH75049.1| conserved hypothetical protein [Vibrio cholerae RC385]
          Length = 195

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 24/79 (30%), Gaps = 10/79 (12%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103
           S               E+ CI C  C   CP  AI   +             + +   +C
Sbjct: 95  SAHDLDNKVKMVAFIHEDMCIGCTKCIQACPVDAIVGGNK----------AVHTVIKNEC 144

Query: 104 IYCGLCQEACPVDAIVEGP 122
             C LC   CP D I   P
Sbjct: 145 TGCDLCVAPCPTDCIEMIP 163


>gi|15897231|ref|NP_341836.1| putative ATPase RIL [Sulfolobus solfataricus P2]
 gi|284174476|ref|ZP_06388445.1| putative ATPase RIL [Sulfolobus solfataricus 98/2]
 gi|13813430|gb|AAK40626.1| RNase L inhibitor [Sulfolobus solfataricus P2]
 gi|261601897|gb|ACX91500.1| ABC transporter related protein [Sulfolobus solfataricus 98/2]
          Length = 600

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 22/75 (29%), Gaps = 5/75 (6%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
                +       ++C     C   CP        G           +  I    CI CG
Sbjct: 1   MRVAVINYDFCKPDKCNL--ECINFCPVD---RSGGKAIELSEIVKGKPVIYEETCIGCG 55

Query: 108 LCQEACPVDAIVEGP 122
           +C + CP +AI    
Sbjct: 56  ICVKKCPYEAISIVN 70


>gi|83409917|emb|CAI64338.1| heterodisulfide reductase, alpha subunit [uncultured archaeon]
          Length = 660

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 11/64 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ C+AC +C  +CP QA++IE                I    C  CG C  ACP  A+
Sbjct: 589 DEDICVACGVCVPMCPFQALSIEDDK-----------LKILTALCKGCGTCMAACPTGAL 637

Query: 119 VEGP 122
            +  
Sbjct: 638 EQSH 641



 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 30/99 (30%), Gaps = 8/99 (8%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
            E       F+ +   +      + C  C LC   CP +   +E              + 
Sbjct: 232 EEVDGYVGNFKVKVKHKPRYLNIDECTGCGLCTEKCPVEVPYVEFDEGIGTRKAIYTPFP 291

Query: 98  --------IDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
                   +D   CI CG C +AC   AI       F+ 
Sbjct: 292 QAVPLRALVDKSICIDCGACIKACERGAIDMDQQETFSE 330


>gi|85713242|ref|ZP_01044268.1| electron transport complex protein RnfC [Idiomarina baltica OS145]
 gi|85692937|gb|EAQ30909.1| electron transport complex protein RnfC [Idiomarina baltica OS145]
          Length = 624

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 2/95 (2%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C  +CPA  +  +               + ++  CI CG C   CP   I
Sbjct: 373 DEMACIRCGACAEVCPA-TLQPQQLQWLAKAKDYPALEENNLFDCIECGACAFVCP-SEI 430

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESEIV 153
                +  A    +    ++ +      R+E+   
Sbjct: 431 PLVHYYRQAKSQMRNQAREQAKAELAKKRFEARQA 465


>gi|121603741|ref|YP_981070.1| 4Fe-4S ferredoxin [Polaromonas naphthalenivorans CJ2]
 gi|120592710|gb|ABM36149.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Polaromonas
           naphthalenivorans CJ2]
          Length = 710

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 9/100 (9%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
             K   +        L      ++ C  C  C   CPA A+              +++  
Sbjct: 555 EVKAEEAIALPAASPLGGLAIDKDACTLCLSCVNACPASALQDNPD---------SLQLK 605

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
                C+ CGLC + CP +A+   P      + ++ +  +
Sbjct: 606 FIEKNCVQCGLCVKTCPENALALLPQLRLTPQRKEAVVLN 645



 Score = 41.2 bits (95), Expect = 0.045,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 9/55 (16%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           I C  C  +C A AI+ +   +         +  ++   C+ CG C   CP  AI
Sbjct: 314 IGCSACIDVCSASAISSDKSRQ---------QIKVNPNLCVGCGACTTVCPSGAI 359


>gi|71029698|ref|XP_764492.1| RNAse L inhibitor [Theileria parva strain Muguga]
 gi|68351446|gb|EAN32209.1| RNAse L inhibitor, putative [Theileria parva]
          Length = 636

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 1/83 (1%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           K   +     E+ LR      ++C   K C   C       ++G +C +    +    I 
Sbjct: 6   KSKPNDSGMSENKLRIAIVSTDKCKP-KKCRQECKRTCPVTKTGKQCIEVDPTSKIAFIS 64

Query: 100 MIKCIYCGLCQEACPVDAIVEGP 122
              CI CG+C + CP +AI    
Sbjct: 65  EHLCIGCGICVKKCPFEAITIIN 87


>gi|332519075|ref|ZP_08395542.1| iron-sulfur binding transmembrane protein [Lacinutrix algicola
           5H-3-7-4]
 gi|332044923|gb|EGI81116.1| iron-sulfur binding transmembrane protein [Lacinutrix algicola
           5H-3-7-4]
          Length = 530

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 26/83 (31%), Gaps = 15/83 (18%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           +CI+C  C   C           +           +I    C+ CG+C   CP   +   
Sbjct: 452 QCISCGNCSTYCEMGIDVRAYAQKGE---------NIVRSSCVGCGVCSAVCPRGVLKLE 502

Query: 122 PNFEFATETRQELYYDKERLLNN 144
            +      +       KE LL N
Sbjct: 503 ND------SMDGRINPKEILLGN 519


>gi|297624163|ref|YP_003705597.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Truepera radiovictrix DSM 17093]
 gi|297165343|gb|ADI15054.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Truepera
           radiovictrix DSM 17093]
          Length = 332

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 3/70 (4%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
              P   + CI C +C  +CP  A   E  P    G        ++  +C  C  C  +C
Sbjct: 238 WTLPRVHDGCIMCPVCTNVCPTGAFKRELSPVQMGGG---GVLKLEPERCNGCNACVTSC 294

Query: 114 PVDAIVEGPN 123
           PV  I     
Sbjct: 295 PVRVITLDGE 304



 Score = 40.9 bits (94), Expect = 0.059,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 12/53 (22%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C +CE  CP QAITI                +ID I C  CGLC +ACP  A+
Sbjct: 34  CTVCEETCPHQAITI------------GRAVEIDEIDCTGCGLCVQACPSQAL 74


>gi|294338445|emb|CAZ86771.1| Tungsten-containing formate dehydrogenase alpha subunit [Thiomonas
           sp. 3As]
          Length = 949

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 8/86 (9%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
             + +         A+       + CI C  C   C  +    +       G    + +D
Sbjct: 134 ETRRTQPAPDVSHPAM---AVNLDACIQCNRCVRACREE-QVNDVIGYAFRGHHSEIVFD 189

Query: 98  IDM----IKCIYCGLCQEACPVDAIV 119
           +        C+ CG C +ACP  A++
Sbjct: 190 LHDPMGDSTCVACGECVQACPTGALM 215


>gi|291531974|emb|CBK97559.1| dihydroorotate oxidase B, catalytic subunit [Eubacterium siraeum
           70/3]
          Length = 494

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 6/60 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            + +CI C  C   C       ++G +  D   +T +      KC+ C LC   CPV+ I
Sbjct: 431 DKNKCIGCGRCYIAC------YDAGHQALDFDSKTRKPVFLGSKCVGCHLCATVCPVNCI 484


>gi|282164239|ref|YP_003356624.1| formate dehydrogenase beta chain [Methanocella paludicola SANAE]
 gi|282156553|dbj|BAI61641.1| formate dehydrogenase beta chain [Methanocella paludicola SANAE]
          Length = 413

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 27/75 (36%), Gaps = 9/75 (12%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICP---------AQAITIESGPRCHDGTRRTVRYDID 99
           G   L        +CI C  C   CP          +A  ++ G    D     +R+   
Sbjct: 281 GTEKLEAIKKDTSKCIRCYACVENCPICYCNECSTKKAWLVQPGQIPPDFMFHMIRFVHV 340

Query: 100 MIKCIYCGLCQEACP 114
              CI CG C+E CP
Sbjct: 341 SDSCINCGQCEELCP 355


>gi|255525208|ref|ZP_05392150.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Clostridium carboxidivorans P7]
 gi|255511071|gb|EET87369.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Clostridium carboxidivorans P7]
          Length = 1175

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 29/98 (29%), Gaps = 20/98 (20%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG   +       ++CI C  C  ICP                A       +       T
Sbjct: 676 RGIAVMIPQWQ-IDKCIQCNQCSYICPHATVRPFLLNEEEVKNAPDTFETKKAAGKGLET 734

Query: 94  VRYDID--MIKCIYCGLCQEACPVDA---IVEGPNFEF 126
             Y I    + C  CG C + CP      I+E    E 
Sbjct: 735 FEYRIQVDPLDCTGCGNCADICPAPGKALIMEQAEHEI 772


>gi|237713748|ref|ZP_04544229.1| pyruvate-flavodoxin oxidoreductase [Bacteroides sp. D1]
 gi|262409345|ref|ZP_06085888.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides sp.
           2_1_22]
 gi|294805995|ref|ZP_06764862.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229446195|gb|EEO51986.1| pyruvate-flavodoxin oxidoreductase [Bacteroides sp. D1]
 gi|262352797|gb|EEZ01894.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides sp.
           2_1_22]
 gi|294446877|gb|EFG15477.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 1182

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 28/81 (34%), Gaps = 15/81 (18%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG  A     N  E CI C  C  +CP                A   +           T
Sbjct: 676 RGVAAFVPEWN-AENCIQCNKCAYVCPHASIRPFVLDAEEQKGAKFEQLKAVGKAFDGMT 734

Query: 94  VRYDIDMIKCIYCGLCQEACP 114
            R  +D++ C+ CG C + CP
Sbjct: 735 FRIQVDVLDCLGCGNCADICP 755


>gi|255658358|ref|ZP_05403767.1| iron-sulfur cluster-binding protein [Mitsuokella multacida DSM
           20544]
 gi|260849688|gb|EEX69695.1| iron-sulfur cluster-binding protein [Mitsuokella multacida DSM
           20544]
          Length = 286

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 9/59 (15%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           + C  C +CEA+CP +AIT+++            +  +D  KC+YCG C ++CP DA  
Sbjct: 163 DNCTFCGVCEAVCPEKAITVKADE---------GKVVLDESKCVYCGKCIKSCPTDAWQ 212


>gi|225175951|ref|ZP_03729943.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1]
 gi|225168539|gb|EEG77341.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1]
          Length = 608

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 26/68 (38%), Gaps = 10/68 (14%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            AL  Y    E C  C LC   CP  AI+                + ID   C+ CGLC 
Sbjct: 530 KALIEYEIVAEDCKGCGLCRKQCPVDAISGGKKEP----------HVIDQATCLRCGLCV 579

Query: 111 EACPVDAI 118
            +C  D I
Sbjct: 580 NSCKFDCI 587



 Score = 40.1 bits (92), Expect = 0.099,   Method: Composition-based stats.
 Identities = 14/44 (31%), Positives = 20/44 (45%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            +          +  + Y+I    C  CGLC++ CPVDAI  G 
Sbjct: 518 HVRDKVCPAKNCKALIEYEIVAEDCKGCGLCRKQCPVDAISGGK 561


>gi|217974577|ref|YP_002359328.1| formate dehydrogenase subunit alpha [Shewanella baltica OS223]
 gi|217499712|gb|ACK47905.1| formate dehydrogenase, alpha subunit [Shewanella baltica OS223]
          Length = 1425

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 24/75 (32%), Gaps = 15/75 (20%)

Query: 59  GEERCIACKLCEAICPAQAITIE---------------SGPRCHDGTRRTVRYDIDMIKC 103
              RCI+C  C  +C  Q+                   S        R      +   KC
Sbjct: 647 DANRCISCGKCVDVCQLQSGHCAIQFAHDSYQALPQDLSETIERRAPRVGFSASMADSKC 706

Query: 104 IYCGLCQEACPVDAI 118
           + CG C + CP  A+
Sbjct: 707 VQCGNCVQVCPTGAL 721



 Score = 34.3 bits (77), Expect = 5.1,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 5/50 (10%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL-C 109
            +C+ C  C  +CP  A+      R  D T       I    C YCG+ C
Sbjct: 704 SKCVQCGNCVQVCPTGALVDARDKRQGDETPLKTASTI----CTYCGVGC 749


>gi|153002002|ref|YP_001367683.1| formate dehydrogenase subunit alpha [Shewanella baltica OS185]
 gi|151366620|gb|ABS09620.1| formate dehydrogenase, alpha subunit [Shewanella baltica OS185]
          Length = 1425

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 24/75 (32%), Gaps = 15/75 (20%)

Query: 59  GEERCIACKLCEAICPAQAITIE---------------SGPRCHDGTRRTVRYDIDMIKC 103
              RCI+C  C  +C  Q+                   S        R      +   KC
Sbjct: 647 DANRCISCGKCVDVCQLQSGHCAIQFAHDSYQALPQDLSETIERRAPRVGFSASMADSKC 706

Query: 104 IYCGLCQEACPVDAI 118
           + CG C + CP  A+
Sbjct: 707 VQCGNCVQVCPTGAL 721



 Score = 34.7 bits (78), Expect = 4.3,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 5/50 (10%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL-C 109
            +C+ C  C  +CP  A+      R  D T       I    C YCG+ C
Sbjct: 704 SKCVQCGNCVQVCPTGALVDARDKRQGDETPPKTASTI----CTYCGVGC 749


>gi|91228909|ref|ZP_01262809.1| electron transport complex protein RnfB [Vibrio alginolyticus
           12G01]
 gi|269968667|ref|ZP_06182663.1| electron transport complex protein RnfB [Vibrio alginolyticus 40B]
 gi|91187540|gb|EAS73872.1| electron transport complex protein RnfB [Vibrio alginolyticus
           12G01]
 gi|269826721|gb|EEZ81059.1| electron transport complex protein RnfB [Vibrio alginolyticus 40B]
          Length = 198

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 25/84 (29%), Gaps = 10/84 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
            +   S               E+ CI C  C   CP  AI   +             + +
Sbjct: 90  VEPEESAHDLDSKIPTVAFIHEDMCIGCTKCIQACPVDAIVGGTK----------AVHTV 139

Query: 99  DMIKCIYCGLCQEACPVDAIVEGP 122
              +C  C LC   CP D I   P
Sbjct: 140 IKDECTGCDLCVAPCPTDCIEMIP 163


>gi|262402197|ref|ZP_06078758.1| iron-sulfur cluster-binding protein [Vibrio sp. RC586]
 gi|297579085|ref|ZP_06941013.1| iron-sulfur cluster-binding protein [Vibrio cholerae RC385]
 gi|262350979|gb|EEZ00112.1| iron-sulfur cluster-binding protein [Vibrio sp. RC586]
 gi|297536679|gb|EFH75512.1| iron-sulfur cluster-binding protein [Vibrio cholerae RC385]
          Length = 553

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 9/75 (12%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             C  C  C A+CP +A+                        C+ CGLC +ACP   +  
Sbjct: 418 SDCTLCMSCVAVCPTRALHPAGDSPA---------LRFIEQDCVQCGLCVKACPEQVLSA 468

Query: 121 GPNFEFATETRQELY 135
            P   +    RQ + 
Sbjct: 469 TPQLNWNKAARQGVV 483



 Score = 41.6 bits (96), Expect = 0.035,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 6/54 (11%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           C+ C   CPA A++ E   +         R  I+   C   G C  ACP +AI 
Sbjct: 186 CERCVDACPAGALSSEGSEQTGH------RIQINPYLCQGVGTCATACPTEAIH 233



 Score = 33.9 bits (76), Expect = 6.7,   Method: Composition-based stats.
 Identities = 6/23 (26%), Positives = 8/23 (34%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIV 119
           +     C  C  C   CP  A+ 
Sbjct: 414 ECQTSDCTLCMSCVAVCPTRALH 436


>gi|332981829|ref|YP_004463270.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Mahella
           australiensis 50-1 BON]
 gi|332699507|gb|AEE96448.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Mahella
           australiensis 50-1 BON]
          Length = 582

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV----RYDIDMIKCIYCGLCQEACP 114
              +CI C+ C + C      I        G    V    +  I+ + CI CG C EACP
Sbjct: 146 DPNKCILCRRCISTCR-NVQEIGVIGATERGFNTMVEPPFKMSINQVPCINCGQCIEACP 204

Query: 115 VDAIVEGPNFE 125
           V A+ E  + E
Sbjct: 205 VGALREKDDTE 215


>gi|332668413|ref|YP_004451201.1| glutamate synthase (NADPH) [Haliscomenobacter hydrossis DSM 1100]
 gi|332337227|gb|AEE54328.1| Glutamate synthase (NADPH) [Haliscomenobacter hydrossis DSM 1100]
          Length = 553

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 61  ERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           +RC++C  C        A   E+  +   G R    Y  D+  C  C +C E CP  AI 
Sbjct: 483 QRCLSCGNCFECDGCYGACPEEAVIKLGKGNR----YRFDLTLCTGCAVCFEQCPCHAIE 538

Query: 120 EGPN 123
               
Sbjct: 539 MVDE 542


>gi|320526764|ref|ZP_08027954.1| 4Fe-4S binding domain protein [Solobacterium moorei F0204]
 gi|320132732|gb|EFW25272.1| 4Fe-4S binding domain protein [Solobacterium moorei F0204]
          Length = 305

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 33/111 (29%), Gaps = 30/111 (27%)

Query: 23  CLRYFFKAKTTINY-----------PFEKGSTS----PRFRGEHALRRYPNGEERCIACK 67
            L   F  K TI             PF K             + A+  Y   + +C++C 
Sbjct: 185 TLGTLFNWKFTILVTITTLSIFVYRPFCKWICPLGAFYALFNKIAIFNYHVDKNKCVSCG 244

Query: 68  LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            C  IC       ++                    CI CG C  ACP  AI
Sbjct: 245 KCARICKMNVDITKNTGDLE---------------CIRCGECITACPTQAI 280


>gi|311104715|ref|YP_003977568.1| electron transport complex, RnfABCDGE type subunit B [Achromobacter
           xylosoxidans A8]
 gi|310759404|gb|ADP14853.1| electron transport complex, RnfABCDGE type, B subunit
           [Achromobacter xylosoxidans A8]
          Length = 214

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 24/70 (34%), Gaps = 10/70 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L      E  CI C LC   CP  AI   +             + +    C  C LC   
Sbjct: 76  LLVARIDEAHCIGCTLCIQACPVDAIVGANK----------HMHTVLADWCTGCDLCVAP 125

Query: 113 CPVDAIVEGP 122
           CPVD I   P
Sbjct: 126 CPVDCIQMVP 135


>gi|253582041|ref|ZP_04859265.1| dihydroorotate dehydrogenase [Fusobacterium varium ATCC 27725]
 gi|251836390|gb|EES64927.1| dihydroorotate dehydrogenase [Fusobacterium varium ATCC 27725]
          Length = 365

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 17/89 (19%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            TI Y  E+   +                E+CI C++C+ +C  +AI I           
Sbjct: 292 ITIKYLAEREKANYITHSPVV------TTEKCIGCRVCKTVCGYKAIEIIEKKAV----- 340

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
                 I+  KC  CG+C   CP  A+  
Sbjct: 341 ------INKEKCFGCGVCVSKCPTKAMDI 363


>gi|254173494|ref|ZP_04880166.1| RNase L inhibitor [Thermococcus sp. AM4]
 gi|214032186|gb|EEB73016.1| RNase L inhibitor [Thermococcus sp. AM4]
          Length = 589

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 22/73 (30%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +R      ++C   K    +C         G           R  I    C  CG+C   
Sbjct: 1   MRIAVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYRPVIQEASCTGCGICVHK 60

Query: 113 CPVDAIVEGPNFE 125
           CP +AI      E
Sbjct: 61  CPFNAITIVNLPE 73


>gi|239617512|ref|YP_002940834.1| Cobyrinic acid ac-diamide synthase [Kosmotoga olearia TBF 19.5.1]
 gi|239506343|gb|ACR79830.1| Cobyrinic acid ac-diamide synthase [Kosmotoga olearia TBF 19.5.1]
          Length = 287

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 31/98 (31%), Gaps = 24/98 (24%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
           +      T+              G+ A          CIAC +CE  C   AI       
Sbjct: 42  HLLMKPETL-------EIHEYIGGKKAEIND-----TCIACGICERTCRFDAI------- 82

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                R    Y +D   C  CG C   CP++AI    N
Sbjct: 83  -----RPGNPYSVDPYACEGCGACVLTCPINAISLNDN 115


>gi|160942429|ref|ZP_02089736.1| hypothetical protein CLOBOL_07313 [Clostridium bolteae ATCC
           BAA-613]
 gi|158434681|gb|EDP12448.1| hypothetical protein CLOBOL_07313 [Clostridium bolteae ATCC
           BAA-613]
          Length = 568

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 34/106 (32%), Gaps = 8/106 (7%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP----AQAITIESGPRCH 87
            T        +  P      A+ R PN   +CI C  C  +C       AI   +     
Sbjct: 117 VTHVGYENTKTQYPIDMSSPAIVRDPN---KCILCGDCVRMCDNVQSVNAIDF-AYRGTE 172

Query: 88  DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
                    +I    C+ CG C+  CP  AI    N E   E   +
Sbjct: 173 ALVTPAFNKNIAETDCVNCGQCRAVCPTGAISINTNIEVIWEALAD 218


>gi|170735207|ref|YP_001774321.1| dihydroorotate dehydrogenase family protein [Burkholderia
           cenocepacia MC0-3]
 gi|169821245|gb|ACA95826.1| dihydroorotate dehydrogenase family protein [Burkholderia
           cenocepacia MC0-3]
          Length = 437

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 6/63 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117
            ++RCI C LC   C     + ++     DG R    +++   +C+ C LC   CPV   
Sbjct: 341 DQDRCIQCGLCHIACED--TSHQAITATKDGVR---HFEVVDSECVGCNLCMHVCPVEQC 395

Query: 118 IVE 120
           I  
Sbjct: 396 ITM 398


>gi|78044647|ref|YP_359587.1| NAD-dependent formate dehydrogenase subunit alpha,
           selenocysteine-containing [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996762|gb|ABB15661.1| NAD-dependent formate dehydrogenase, alpha subunit,
           selenocysteine-containing [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 893

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 28/83 (33%), Gaps = 7/83 (8%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA-ITIESGPRCHDGTRRTVRYD 97
           EK            +R       +CI C  C  +C      ++         T+    YD
Sbjct: 128 EKNVYPIEDNNPFIVR----DMNKCILCGKCVRVCDEIVGYSVIDFINRGFKTKVAPPYD 183

Query: 98  --IDMIKCIYCGLCQEACPVDAI 118
             +    C++CG C   CP  A+
Sbjct: 184 GTLAESNCVFCGSCVTVCPTGAL 206


>gi|117920613|ref|YP_869805.1| electron transport complex protein RnfB [Shewanella sp. ANA-3]
 gi|166225087|sp|A0KX80|RNFB_SHESA RecName: Full=Electron transport complex protein rnfB
 gi|117612945|gb|ABK48399.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           sp. ANA-3]
          Length = 193

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 25/72 (34%), Gaps = 10/72 (13%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
              +     E+ CI C  C   CP  AI               + + +    C  C LC 
Sbjct: 102 QVKKVAYIREDECIGCTKCIQACPVDAIIGAGK----------LMHTVLTADCTGCDLCV 151

Query: 111 EACPVDAIVEGP 122
           E CPVD I   P
Sbjct: 152 EPCPVDCIDMIP 163


>gi|312878821|ref|ZP_07738621.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Aminomonas
           paucivorans DSM 12260]
 gi|310782112|gb|EFQ22510.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Aminomonas
           paucivorans DSM 12260]
          Length = 331

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 7/74 (9%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
              A  R    + RC+ C  C   CP Q   +          +R++ +D    +C  CGL
Sbjct: 263 WPEAKYRVQWDDSRCVRCGRCVPRCPFQVFEVTRREE-----KRSMSFD--SSRCRGCGL 315

Query: 109 CQEACPVDAIVEGP 122
           C E CP  A+  GP
Sbjct: 316 CVEVCPAGALRLGP 329



 Score = 37.8 bits (86), Expect = 0.52,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 16/73 (21%), Gaps = 4/73 (5%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L      +  C     C             G       R       D  +C+ CG C   
Sbjct: 231 LMHSAGPDALCNCDGCCCYPARVGKRLHCVGLWPEAKYRVQW----DDSRCVRCGRCVPR 286

Query: 113 CPVDAIVEGPNFE 125
           CP          E
Sbjct: 287 CPFQVFEVTRREE 299


>gi|310778346|ref|YP_003966679.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Ilyobacter
           polytropus DSM 2926]
 gi|309747669|gb|ADO82331.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Ilyobacter
           polytropus DSM 2926]
          Length = 1186

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/133 (23%), Positives = 44/133 (33%), Gaps = 29/133 (21%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC--------------PAQAITIESG 83
           FE G+T+   RG      +    E CI C  C  +C               A A    + 
Sbjct: 674 FENGTTAYEKRGIAVNVPHWV-SENCIQCNQCSYVCPHAVIRPFLINEEEMANAPEGLTT 732

Query: 84  PRCHDGTRRTVRYDIDMI--KCIYCGLCQEACPVD---AIVEGP--------NFEFATET 130
            +        ++Y I +    C  CG C   CP     A+V  P          E A   
Sbjct: 733 IKPIGKGLDGLQYKIQVSTLDCTGCGSCANVCPAPKGKALVMNPIGEEVAAGEPENANFL 792

Query: 131 RQELYYDKERLLN 143
             E+ Y K+ L+ 
Sbjct: 793 FNEVTY-KDDLMA 804


>gi|301058314|ref|ZP_07199347.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300447550|gb|EFK11282.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 1130

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 6/59 (10%)

Query: 59   GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
             EERC  C  C  ICP +A++                  +D   C  CG C   CP +A
Sbjct: 1058 DEERCRGCGRCIEICPYRAVSFHPNGVGGW------HAVVDEALCKGCGNCISVCPSNA 1110



 Score = 38.2 bits (87), Expect = 0.45,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 15/32 (46%)

Query: 92   RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
            +     +D  +C  CG C E CP  A+   PN
Sbjct: 1051 KGFTVVVDEERCRGCGRCIEICPYRAVSFHPN 1082


>gi|258543222|ref|YP_003188655.1| dihydropyrimidine dehydrogenase [Acetobacter pasteurianus IFO
           3283-01]
 gi|256634300|dbj|BAI00276.1| dihydroorotate dehydrogenase [Acetobacter pasteurianus IFO 3283-01]
 gi|256637360|dbj|BAI03329.1| dihydroorotate dehydrogenase [Acetobacter pasteurianus IFO 3283-03]
 gi|256640412|dbj|BAI06374.1| dihydroorotate dehydrogenase [Acetobacter pasteurianus IFO 3283-07]
 gi|256643469|dbj|BAI09424.1| dihydroorotate dehydrogenase [Acetobacter pasteurianus IFO 3283-22]
 gi|256646524|dbj|BAI12472.1| dihydroorotate dehydrogenase [Acetobacter pasteurianus IFO 3283-26]
 gi|256649577|dbj|BAI15518.1| dihydroorotate dehydrogenase [Acetobacter pasteurianus IFO 3283-32]
 gi|256652563|dbj|BAI18497.1| dihydroorotate dehydrogenase [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655621|dbj|BAI21548.1| dihydroorotate dehydrogenase [Acetobacter pasteurianus IFO 3283-12]
          Length = 422

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 5/70 (7%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP-V 115
              ++ C++C LC   C   +    S  R          Y++   +C+ C LC   CP  
Sbjct: 339 NINQDACVSCGLCHIACEDTSHQAISKTRVDG----ERHYEVIEEECVGCNLCAHVCPID 394

Query: 116 DAIVEGPNFE 125
             I   P  E
Sbjct: 395 GCITMEPQPE 404


>gi|304316572|ref|YP_003851717.1| Fe-S cluster domain protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778074|gb|ADL68633.1| Fe-S cluster domain protein [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 436

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 27/77 (35%), Gaps = 12/77 (15%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
                    ++RC  C  C   CP +AI +  G              I   KCI CG C 
Sbjct: 1   MYFHSVTLDKDRCKGCTNCIKRCPTEAIRVRDGKA-----------KIIKEKCIDCGECV 49

Query: 111 EACPVDA-IVEGPNFEF 126
             CP  A IV   + E 
Sbjct: 50  RVCPYHAKIVVTDDTEM 66


>gi|149190374|ref|ZP_01868646.1| electron transport complex protein RnfB [Vibrio shilonii AK1]
 gi|148835753|gb|EDL52718.1| electron transport complex protein RnfB [Vibrio shilonii AK1]
          Length = 193

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 27/78 (34%), Gaps = 10/78 (12%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E+ CI C  C   CP  AI   +             + +   +C  C LC   CP D
Sbjct: 108 FIHEDMCIGCTKCIQACPVDAIVGGTK----------ALHTVIKDECTGCDLCVAPCPTD 157

Query: 117 AIVEGPNFEFATETRQEL 134
            I   P    A   + +L
Sbjct: 158 CIEMIPVKTTADTWKWQL 175


>gi|19547863|gb|AAK60409.1| hydrogenase [Neocallimastix frontalis]
          Length = 636

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 3/63 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPV 115
              +C+ C  C   C         G     G  R        ++  KC+ CG C + CPV
Sbjct: 185 DMNKCVKCGRCIRACHHFQNINILGFINRAGYERVGTPMDRPMNFTKCVECGQCSQVCPV 244

Query: 116 DAI 118
            AI
Sbjct: 245 GAI 247


>gi|313638814|gb|EFS03887.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Listeria seeligeri
           FSL S4-171]
          Length = 906

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 29/93 (31%), Gaps = 16/93 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPA------------QAITIESGPRCHDGTRRTVRYDI 98
            AL       E C  C  C  +CP              A   E         +  + Y I
Sbjct: 370 IALEVPEWISENCTMCNECAFVCPHAAIRPILTDEAEMASAPEGFMTRKMRGKDGLEYRI 429

Query: 99  D--MIKCIYCGLCQEACPV--DAIVEGPNFEFA 127
               + C  C LC E CP    A+V  P  E A
Sbjct: 430 QVSPMDCTGCNLCAETCPAKDKALVMKPFEEVA 462


>gi|313634190|gb|EFS00842.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Listeria seeligeri
           FSL N1-067]
          Length = 1216

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 29/93 (31%), Gaps = 16/93 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPA------------QAITIESGPRCHDGTRRTVRYDI 98
            AL       E C  C  C  +CP              A   E         +  + Y I
Sbjct: 680 IALEVPEWISENCTMCNECAFVCPHAAIRPILTDEAEMASAPEGFMTRKMRGKDGLEYRI 739

Query: 99  D--MIKCIYCGLCQEACPV--DAIVEGPNFEFA 127
               + C  C LC E CP    A+V  P  E A
Sbjct: 740 QVSPMDCTGCNLCAETCPAKDKALVMKPFEEVA 772


>gi|300245949|gb|ADJ94032.1| putative benzoate-degrading protein BamI [Clostridia bacterium
           enrichment culture clone BF]
          Length = 365

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 32/98 (32%), Gaps = 2/98 (2%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T    +E    S      H +     G +    C  C       +I     PR      
Sbjct: 222 ITKEEAYEIIKLSEEAGLVHFVDNAAEGVKHTCNCCGCA-CWNVGSIKRRKIPRDVLMAT 280

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
             +R + D   C  CG C E CPV+A+    +F    E
Sbjct: 281 YFMR-ETDEGSCTGCGACVEVCPVNALTMEGDFPVVDE 317



 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 26/78 (33%), Gaps = 11/78 (14%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           K    PR             E  C  C  C  +CP  A+T+E      D           
Sbjct: 268 KRRKIPRDVLMATYFMRETDEGSCTGCGACVEVCPVNALTMEGDFPVVDEGW-------- 319

Query: 100 MIKCIYCGLCQEACPVDA 117
              CI CG+C   CP +A
Sbjct: 320 ---CIGCGVCIPKCPTEA 334


>gi|282164249|ref|YP_003356634.1| tungsten-containing formylmethanofuran dehydrogenase subunit F
           [Methanocella paludicola SANAE]
 gi|282156563|dbj|BAI61651.1| tungsten-containing formylmethanofuran dehydrogenase subunit F
           [Methanocella paludicola SANAE]
          Length = 363

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 31/61 (50%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ++C  C +C   CP +AIT  +      G  +  + D+D  KC +CG+C   CP DAI  
Sbjct: 32  DKCTGCGVCIDACPEEAITRGAVGASGRGKAKVAKIDVDEKKCSFCGVCNIMCPFDAIKL 91

Query: 121 G 121
            
Sbjct: 92  T 92



 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 10/93 (10%)

Query: 36  YPFE---KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
            P E   +G+     RG+  + +    E++C  C +C  +CP  AI +    +       
Sbjct: 44  CPEEAITRGAVGASGRGKAKVAKIDVDEKKCSFCGVCNIMCPFDAIKLTVDGQPKLPIIE 103

Query: 93  TVRY-------DIDMIKCIYCGLCQEACPVDAI 118
              +        ID  KC +C LC+E CP DAI
Sbjct: 104 QQGFPVLEKKAKIDPEKCTHCVLCEEVCPRDAI 136



 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 5/106 (4%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE-----SGPRCHDGTRRTV 94
           K     +       ++     E+C  C LCE +CP  AI  E      G +     + ++
Sbjct: 98  KLPIIEQQGFPVLEKKAKIDPEKCTHCVLCEEVCPRDAIKREVADVDQGHKASSTMKYSI 157

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140
            Y +D  KC  CG+C EAC    I          +   +L +D+++
Sbjct: 158 DYKLDEDKCTLCGICAEACDAFKIDYKEPTPLTVKKIGKLNFDEKK 203



 Score = 41.6 bits (96), Expect = 0.034,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
             Y   E++C  C +C   C   A  I+         ++  + + D  KC  C +C E C
Sbjct: 157 IDYKLDEDKCTLCGICAEAC--DAFKIDYKEPTPLTVKKIGKLNFDEKKCDACKVCVEIC 214

Query: 114 PVDAIVE 120
           P DA+  
Sbjct: 215 PEDALQI 221



 Score = 40.1 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 11/106 (10%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPN-GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            P +      +   E  L+   +   E+C  C  C+ ICP +A  +E             
Sbjct: 214 CPEDALQIERKILEEPKLKGKVDIDLEKCTTCSWCQVICPQEAAKVEKLFEGEL------ 267

Query: 95  RYDIDMIKC-IYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139
              I+  KC   C  C E CP +A+   P  E A +   +L Y+K+
Sbjct: 268 --TINTDKCPAGCSTCVEICPCNALYL-PLVEEAGQKPGKLSYNKD 310



 Score = 38.5 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 5/88 (5%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
             K  T    +    L       ++C ACK+C  ICP  A+ IE         +   + D
Sbjct: 182 DYKEPTPLTVKKIGKLNFDE---KKCDACKVCVEICPEDALQIERKILEEPKLK--GKVD 236

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           ID+ KC  C  CQ  CP +A      FE
Sbjct: 237 IDLEKCTTCSWCQVICPQEAAKVEKLFE 264



 Score = 37.8 bits (86), Expect = 0.59,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 7/81 (8%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93
           +  P E       F GE  +            C  C  ICP  A+ +   P   +  ++ 
Sbjct: 250 VICPQEAAKVEKLFEGELTINTDKCPAG----CSTCVEICPCNALYL---PLVEEAGQKP 302

Query: 94  VRYDIDMIKCIYCGLCQEACP 114
            +   +   C+YCG C  ACP
Sbjct: 303 GKLSYNKDFCMYCGACVTACP 323


>gi|260587118|ref|ZP_05853031.1| glutamate synthase [Blautia hansenii DSM 20583]
 gi|331082898|ref|ZP_08332019.1| hypothetical protein HMPREF0992_00943 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260542608|gb|EEX23177.1| glutamate synthase [Blautia hansenii DSM 20583]
 gi|330400039|gb|EGG79692.1| hypothetical protein HMPREF0992_00943 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 501

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 9/65 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E RCI C++CE  C  +    +                 D  KC+ C  C   CP  A+
Sbjct: 15  NENRCITCRICEQQCANEVHFYDKE---------HKIMKHDETKCVNCQRCVSFCPTRAL 65

Query: 119 VEGPN 123
               N
Sbjct: 66  KIIKN 70


>gi|166033231|ref|ZP_02236060.1| hypothetical protein DORFOR_02956 [Dorea formicigenerans ATCC
           27755]
 gi|166027588|gb|EDR46345.1| hypothetical protein DORFOR_02956 [Dorea formicigenerans ATCC
           27755]
          Length = 291

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 28/80 (35%), Gaps = 11/80 (13%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
               G           + CI C +C   C   A+ +E G              ID  KC 
Sbjct: 151 ENDVGIKGGMTVECNHDDCIQCGVCVKACREGALRMEDGKIV-----------IDREKCN 199

Query: 105 YCGLCQEACPVDAIVEGPNF 124
            C  C ++CP DA V  P +
Sbjct: 200 NCARCVKSCPTDAWVGEPGY 219



 Score = 35.1 bits (79), Expect = 3.1,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 16/45 (35%)

Query: 78  ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                      G +  +  + +   CI CG+C +AC   A+    
Sbjct: 144 NNCLKAEENDVGIKGGMTVECNHDDCIQCGVCVKACREGALRMED 188


>gi|145299425|ref|YP_001142266.1| electron transport complex protein RnfB [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|166225079|sp|A4SNP6|RNFB_AERS4 RecName: Full=Electron transport complex protein rnfB
 gi|142852197|gb|ABO90518.1| electron transport complex protein RnfB [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 187

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 10/72 (13%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
              +     E++CI C  C   CP  AI   +             + +   +C  C LC 
Sbjct: 103 PVKKVAFIHEDQCIGCTKCIQACPVDAIVGATK----------AMHTVITDECTGCDLCV 152

Query: 111 EACPVDAIVEGP 122
           + CP D I   P
Sbjct: 153 DPCPTDCIEMIP 164


>gi|118776473|gb|ABL14244.1| dihydroprimidine dehydrogenase [Bacillus fordii]
          Length = 426

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 21/63 (33%), Gaps = 4/63 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117
             + CI C  C   C   +          +G            +C+ C LC   CPV+ A
Sbjct: 338 NNDICINCNKCHIACEDTSHQCIDMLTDENGHGYLKV---REEECVGCNLCSIVCPVEGA 394

Query: 118 IVE 120
           I  
Sbjct: 395 IDM 397


>gi|172065004|ref|YP_001815716.1| dihydroorotate dehydrogenase family protein [Burkholderia ambifaria
           MC40-6]
 gi|171997246|gb|ACB68163.1| dihydroorotate dehydrogenase family protein [Burkholderia ambifaria
           MC40-6]
          Length = 435

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 6/63 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117
            ++RCI C LC   C   +    +  +          +++   +C+ C LC   CPV   
Sbjct: 341 DQDRCIQCGLCHIACEDTSHQAITAQKDGV-----RHFEVVDAECVGCNLCMHVCPVEQC 395

Query: 118 IVE 120
           I  
Sbjct: 396 ITM 398


>gi|158319328|ref|YP_001511835.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
 gi|158139527|gb|ABW17839.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs]
          Length = 582

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 10/66 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L  Y   +E+CI C LC   CP +AI+ E+             + I+   CI CG C E 
Sbjct: 524 LLEYNILDEKCIGCGLCRRNCPVEAISGETKK----------VHSINQELCIQCGKCYEV 573

Query: 113 CPVDAI 118
           C   A+
Sbjct: 574 CKFGAV 579



 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/40 (40%), Positives = 20/40 (50%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            I          R  + Y+I   KCI CGLC+  CPV+AI
Sbjct: 510 HIHRKKCPAKQCRNLLEYNILDEKCIGCGLCRRNCPVEAI 549


>gi|127512995|ref|YP_001094192.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           loihica PV-4]
 gi|166225086|sp|A3QEN5|RNFB_SHELP RecName: Full=Electron transport complex protein rnfB
 gi|126638290|gb|ABO23933.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           loihica PV-4]
          Length = 189

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 22/64 (34%), Gaps = 10/64 (15%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            CI C  C   CP  AI                 + +    C  C LC E CPVD I   
Sbjct: 113 ECIGCTKCIQACPVDAILGTGKQ----------MHTVITDYCTGCDLCVEPCPVDCIDMI 162

Query: 122 PNFE 125
           P  E
Sbjct: 163 PVAE 166



 Score = 34.7 bits (78), Expect = 4.7,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEG 121
           I   +CI C  C +ACPVDAI+  
Sbjct: 109 IREAECIGCTKCIQACPVDAILGT 132


>gi|23016779|ref|ZP_00056531.1| COG3383: Uncharacterized anaerobic dehydrogenase [Magnetospirillum
           magnetotacticum MS-1]
          Length = 893

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 5/62 (8%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACPVDAI 118
           CI C LC   C       +       G    + +D    +    C+ CG C +ACP  A+
Sbjct: 142 CIHCALCLRACR-DVQVNDVIGMSGRGAHSRISFDFADPMGASSCVGCGECVQACPTGAL 200

Query: 119 VE 120
             
Sbjct: 201 AL 202


>gi|332289788|ref|YP_004420640.1| electron transport complex protein RnfC [Gallibacterium anatis
           UMN179]
 gi|330432684|gb|AEC17743.1| electron transport complex protein RnfC [Gallibacterium anatis
           UMN179]
          Length = 816

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 35/104 (33%), Gaps = 5/104 (4%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             CI C  C   CP + +  +                 ++  CI CG+C   CP   I  
Sbjct: 377 RNCIRCSACSDHCPIK-LMPQQLYWFARSEDHEKSEQYNLKDCIECGVCAYVCP-SNIPL 434

Query: 121 GPNFEFATETRQELYYDKERLLNNGD-RWESEIVRNIVTDSPYR 163
              F        EL   K +L      R+E++  R +  +   R
Sbjct: 435 IQYFRQEKAKIAELKL-KAKLAEEAKVRFEAKQAR-MEREKQER 476


>gi|328952548|ref|YP_004369882.1| Glutamate synthase (NADPH) [Desulfobacca acetoxidans DSM 11109]
 gi|328452872|gb|AEB08701.1| Glutamate synthase (NADPH) [Desulfobacca acetoxidans DSM 11109]
          Length = 1503

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 10/64 (15%)

Query: 59   GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              E+C+ C  C   CP  A  +                DID  +C  CG C  ACP   I
Sbjct: 1422 DREKCVVCMTCARTCPFGAPKVAEDG----------FIDIDPAECHGCGNCASACPRRLI 1471

Query: 119  VEGP 122
                
Sbjct: 1472 QVQH 1475



 Score = 35.5 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 21/75 (28%), Gaps = 4/75 (5%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG----PRCHDGTRRTVRYDID 99
              FR E  LR        C AC  C  +CP    +         R              
Sbjct: 103 PGHFRLEIELRPRYVEVNICTACGECAKVCPVTLPSPFDEGLGLRRAAYRHFPQAIPSAY 162

Query: 100 MIKCIYCGLCQEACP 114
            I+ +    C  ACP
Sbjct: 163 AIEKLDRAPCVRACP 177


>gi|262165720|ref|ZP_06033457.1| iron-sulfur cluster-binding protein [Vibrio mimicus VM223]
 gi|262025436|gb|EEY44104.1| iron-sulfur cluster-binding protein [Vibrio mimicus VM223]
          Length = 553

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 9/75 (12%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             C  C  C A+CP +A+                        C+ CGLC +ACP   +  
Sbjct: 418 SDCTLCMSCVAVCPTRALHPAGDSPA---------LRFIEQDCVQCGLCVKACPEQVLSA 468

Query: 121 GPNFEFATETRQELY 135
            P   +    RQ + 
Sbjct: 469 TPQLNWNKAARQGVV 483



 Score = 41.2 bits (95), Expect = 0.053,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 14/81 (17%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           C+ C   CPA A++ E   +         R  I+   C   G C  ACP +AI     + 
Sbjct: 186 CERCVDACPAGALSSEGSDQTGH------RIQINPYLCQGVGTCATACPTEAIH----YA 235

Query: 126 FA-TETRQELYYDKERLLNNG 145
                  Q+     ERLL N 
Sbjct: 236 LPNPTDTQKFI---ERLLANY 253



 Score = 33.9 bits (76), Expect = 6.9,   Method: Composition-based stats.
 Identities = 6/23 (26%), Positives = 8/23 (34%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIV 119
           +     C  C  C   CP  A+ 
Sbjct: 414 ECQTSDCTLCMSCVAVCPTRALH 436


>gi|258622882|ref|ZP_05717898.1| iron-sulfur cluster-binding protein [Vibrio mimicus VM573]
 gi|258584821|gb|EEW09554.1| iron-sulfur cluster-binding protein [Vibrio mimicus VM573]
          Length = 553

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 9/75 (12%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             C  C  C A+CP +A+                        C+ CGLC +ACP   +  
Sbjct: 418 SDCTLCMSCVAVCPTRALHPAGDSPA---------LRFIEQDCVQCGLCVKACPEQVLSA 468

Query: 121 GPNFEFATETRQELY 135
            P   +    RQ + 
Sbjct: 469 TPQLNWNKAARQGVV 483



 Score = 41.2 bits (95), Expect = 0.052,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 14/81 (17%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           C+ C   CPA A++ E   +         R  I+   C   G C  ACP +AI     + 
Sbjct: 186 CERCVDACPAGALSSEGSDQTGH------RIQINPYLCQGVGTCATACPTEAIH----YA 235

Query: 126 FA-TETRQELYYDKERLLNNG 145
                  Q+     ERLL N 
Sbjct: 236 LPNPTDTQKFI---ERLLANY 253



 Score = 33.9 bits (76), Expect = 8.1,   Method: Composition-based stats.
 Identities = 6/23 (26%), Positives = 8/23 (34%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIV 119
           +     C  C  C   CP  A+ 
Sbjct: 414 ECKTSDCTLCMSCVAVCPTRALH 436


>gi|291286049|ref|YP_003502865.1| ferredoxin-dependent glutamate synthase [Denitrovibrio acetiphilus
           DSM 12809]
 gi|290883209|gb|ADD66909.1| ferredoxin-dependent glutamate synthase [Denitrovibrio acetiphilus
           DSM 12809]
          Length = 907

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 32/113 (28%), Gaps = 21/113 (18%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEER-CIACKLCEAICPA---------QAITIESGPRC 86
           P EKG  +   +    +        R C+ C  C   C              T+E     
Sbjct: 18  PDEKGIFAQGAKYWVKVTDDIEEPGRGCVHCSTCVESCTHNIKEPGAGHGVFTMEERYYD 77

Query: 87  HDGTRR-----------TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
             G R                 I+  +C  C  C + CP  AI    N ++  
Sbjct: 78  DGGHRVSPDSSDEINLIEKILWINPDECCNCKRCVKMCPQRAIKVYDNPDYHD 130


>gi|222445295|ref|ZP_03607810.1| hypothetical protein METSMIALI_00923 [Methanobrevibacter smithii
           DSM 2375]
 gi|261350144|ref|ZP_05975561.1| polyferredoxin protein MvhB [Methanobrevibacter smithii DSM 2374]
 gi|222434860|gb|EEE42025.1| hypothetical protein METSMIALI_00923 [Methanobrevibacter smithii
           DSM 2375]
 gi|288860930|gb|EFC93228.1| polyferredoxin protein MvhB [Methanobrevibacter smithii DSM 2374]
          Length = 413

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           CI C LC   CP  A+   +  +     +    +D+++ KCI C  C EACP D I
Sbjct: 177 CIKCGLCSQTCPWNAVF-IAEKKPAKRAKTINAFDLELSKCIGCNTCVEACPGDFI 231



 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 1/65 (1%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTV-RYDIDMIKCIYCGLCQEACPVDAI 118
              CI C  C A+C   A+++ S  +  DG   T  R + +  KC  CG C EACP + +
Sbjct: 322 FASCIRCGACAAVCSNDALSVGSIEKVIDGETVTRDRIEFNPYKCNECGDCIEACPYNML 381

Query: 119 VEGPN 123
               N
Sbjct: 382 HATGN 386



 Score = 40.9 bits (94), Expect = 0.066,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 62  RCIACKLCEAICPAQAITIES-GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            C+ C+ C  ICP   I I        +      +  I +  C+ CG C + CPV AI  
Sbjct: 104 FCVMCQKCVDICPVDVIGIPGIVEPKGEVIDLDGKGPIYINDCVGCGTCVDPCPVSAITL 163

Query: 121 GPN 123
              
Sbjct: 164 DEI 166



 Score = 38.2 bits (87), Expect = 0.41,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 19/61 (31%), Gaps = 11/61 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              +C  C  C   CP   +      +              M  C  CG C +ACP  A+
Sbjct: 362 NPYKCNECGDCIEACPYNMLHATGNEKFPI-----------MGFCTLCGQCIDACPKHAL 410

Query: 119 V 119
            
Sbjct: 411 Y 411



 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 62  RCIACK---LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            C  C     C  +CP  A+ +E+      G    +R   +   C  CG C+EACP D I
Sbjct: 33  HCDTCGGEPKCADVCPEGALKVETYSIAE-GAEEQIRLVFNSTLCNSCGKCEEACPQDTI 91

Query: 119 VEGPN 123
               N
Sbjct: 92  KLTGN 96



 Score = 35.5 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 25/90 (27%), Gaps = 11/90 (12%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           K  T     G     R       C +C  CE  CP   I +                   
Sbjct: 53  KVETYSIAEGAEEQIRLVFNSTLCNSCGKCEEACPQDTIKLTGNDLMEV----------- 101

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
              C+ C  C + CPVD I      E   E
Sbjct: 102 EGFCVMCQKCVDICPVDVIGIPGIVEPKGE 131



 Score = 35.5 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 9/60 (15%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             C+ C  C   CP  AIT++                I    CI CGLC + CP +A+  
Sbjct: 144 NDCVGCGTCVDPCPVSAITLDE---------IGGTISIADDVCIKCGLCSQTCPWNAVFI 194



 Score = 35.1 bits (79), Expect = 3.1,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 18/56 (32%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
              E+C     C   CP +AI + +              +     CI CG C   C
Sbjct: 280 YDAEKCDFVGACANKCPTEAIRVVTKTGMLCPALEETDAEPSFASCIRCGACAAVC 335



 Score = 33.9 bits (76), Expect = 7.4,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 12/24 (50%)

Query: 99  DMIKCIYCGLCQEACPVDAIVEGP 122
           +   CI CG C+  CP  AI   P
Sbjct: 5   NEDGCIRCGACEGTCPTSAIDVTP 28


>gi|212711765|ref|ZP_03319893.1| hypothetical protein PROVALCAL_02840 [Providencia alcalifaciens DSM
           30120]
 gi|212685287|gb|EEB44815.1| hypothetical protein PROVALCAL_02840 [Providencia alcalifaciens DSM
           30120]
          Length = 636

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 33/107 (30%), Gaps = 11/107 (10%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C LC   CPA  +  +       G         ++  CI CG C   CP   I    
Sbjct: 378 CIRCGLCVDACPAS-LLPQQLYWFSKGKEHEKAQKHNLFDCIECGACAYVCP-SNIPLVQ 435

Query: 123 NF--------EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161
            +        E   E R+     K+R      R E E +        
Sbjct: 436 YYRQEKAEIREIDQEERRS-IEAKQRFEAKQQRMEREKLAREERHKK 481



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/15 (60%), Positives = 10/15 (66%)

Query: 100 MIKCIYCGLCQEACP 114
              CI CGLC +ACP
Sbjct: 375 EEACIRCGLCVDACP 389


>gi|188588987|ref|YP_001919988.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum
           E3 str. Alaska E43]
 gi|188499268|gb|ACD52404.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum
           E3 str. Alaska E43]
          Length = 362

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 12/63 (19%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++ CI C +C+  C   AI + +               ID  KC  CGLC   CP +A+
Sbjct: 310 NQDACIKCGICKTSCVYDAIEVSNE------------LIIDSKKCFGCGLCVTRCPKNAL 357

Query: 119 VEG 121
              
Sbjct: 358 SMQ 360


>gi|167470482|ref|ZP_02335186.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis FV-1]
          Length = 190

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 24/78 (30%), Gaps = 10/78 (12%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C  C   CP  AI   +             + +    C  C LC   CP D
Sbjct: 113 FIDEANCIGCTKCIQACPVDAIIGAT----------RAMHTVLSDLCTGCDLCVAPCPTD 162

Query: 117 AIVEGPNFEFATETRQEL 134
            I   P        + +L
Sbjct: 163 CIEMIPVATTTANWKWDL 180


>gi|218778106|ref|YP_002429424.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218759490|gb|ACL01956.1| Heterodisulfide reductase, subunit A-like protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 1012

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 37/100 (37%), Gaps = 27/100 (27%)

Query: 57  PNGEERCIACKLCEAICPAQAITIE-------SGPRCHDGTRRTVRYDIDMIKCIY---- 105
               E+CIAC  C A CP +                        +++ ID  +C+     
Sbjct: 103 YVDTEKCIACGQCAAKCPKKVTDEYNQGLIKRKAIYVPYPQAVPLKFAIDPEQCLKLTKD 162

Query: 106 -CGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNN 144
            CG C++ CP  AI               LY DKE++L+ 
Sbjct: 163 KCGNCEKVCPAGAI---------------LYDDKEKILDI 187



 Score = 40.9 bits (94), Expect = 0.056,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 6/63 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C +C +C + CP  A ++                +I+ + C  CG C  +C   A+
Sbjct: 939 DPRFCSSCMVCVSTCPYSAPSMVKEGPNAGKA------EINPVLCKGCGQCVASCRSGAL 992

Query: 119 VEG 121
              
Sbjct: 993 HLQ 995


>gi|86156647|ref|YP_463432.1| pyruvate-ferredoxin (flavodoxin) oxidoreductase [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85773158|gb|ABC79995.1| pyruvate-ferredoxin (flavodoxin) oxidoreductase [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 1200

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/130 (18%), Positives = 31/130 (23%), Gaps = 27/130 (20%)

Query: 31  KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------Q 76
                +P     TS   +   AL         CI C  C  ICP                
Sbjct: 668 PVDGTWP---TGTSKWEKRSIALEIPVWEPSLCIQCNKCALICPHAAIRPKFYGPEVLGG 724

Query: 77  AITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACP--------VDAIVEGPNFEF 126
           A              +  +Y   +    C  C LC E CP          AI        
Sbjct: 725 APQGFLAMDYKSADVKGAKYSLQVAPDDCTGCTLCVEICPAESKTEKGKKAINMADAMPL 784

Query: 127 ATETRQELYY 136
             + R    +
Sbjct: 785 KEKERANFEF 794


>gi|46580233|ref|YP_011041.1| glutamate synthase, iron-sulfur cluster-binding subunit
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|120602382|ref|YP_966782.1| glutamate synthase (NADPH) [Desulfovibrio vulgaris DP4]
 gi|46449650|gb|AAS96300.1| glutamate synthase, iron-sulfur cluster-binding subunit, putative
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|120562611|gb|ABM28355.1| glutamate synthase (NADPH) GltB2 subunit [Desulfovibrio vulgaris
           DP4]
 gi|311233781|gb|ADP86635.1| Glutamate synthase (NADPH) [Desulfovibrio vulgaris RCH1]
          Length = 507

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 24/79 (30%), Gaps = 13/79 (16%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
             S  F              RCI C++C   C       +   +         R + D  
Sbjct: 5   PISQHFNDFVV----ERERARCIDCEVCVRQCSYGVHFWDEARK---------RVEHDSS 51

Query: 102 KCIYCGLCQEACPVDAIVE 120
           KC+ C  C   CP D +  
Sbjct: 52  KCVGCHRCAAMCPTDCLTI 70


>gi|71907126|ref|YP_284713.1| electron transport complex, RnfABCDGE type, C subunit
           [Dechloromonas aromatica RCB]
 gi|71846747|gb|AAZ46243.1| Electron transport complex, RnfABCDGE type, C subunit
           [Dechloromonas aromatica RCB]
          Length = 503

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 28/87 (32%), Gaps = 7/87 (8%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            CI C  C   CP   + +E   R   G          +  CI CG C   CP   I   
Sbjct: 371 PCIRCGNCTKACPMGLLPLEMAARIRVGDLEGAE-AFALSDCISCGCCAYVCPSH-IPLV 428

Query: 122 PNF-----EFATETRQELYYDKERLLN 143
             F     E     R +L  D  + L 
Sbjct: 429 QYFSHAKGELTAAERTKLRTDATKRLA 455


>gi|28212003|ref|NP_782947.1| periplasmic [Fe] hydrogenase 1 [Clostridium tetani E88]
 gi|28204446|gb|AAO36884.1| periplasmic [Fe] hydrogenase 1 [Clostridium tetani E88]
          Length = 494

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 7/69 (10%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-------IDMIKCIYCGLC 109
               E C  C LCE+ CP  AI     P         ++ +       I+   CI CG C
Sbjct: 135 YINHETCKECGLCESACPYNAIAEVMRPCRRACPTGALQMNLEDNKATINKEDCINCGSC 194

Query: 110 QEACPVDAI 118
              CP  AI
Sbjct: 195 MSVCPFGAI 203


>gi|150019644|ref|YP_001311898.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Clostridium beijerinckii NCIMB 8052]
 gi|149906109|gb|ABR36942.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Clostridium
           beijerinckii NCIMB 8052]
          Length = 368

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 11/59 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           ++C+ C +C   C   AI++                 I+  KC+ CG C   CP+DA++
Sbjct: 195 DKCVGCGMCAKNCAHSAISLTDKKAL-----------INHSKCVGCGRCIGICPMDAVM 242


>gi|332296157|ref|YP_004438080.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermodesulfobium narugense DSM 14796]
 gi|332179260|gb|AEE14949.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermodesulfobium narugense DSM 14796]
          Length = 92

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 7/62 (11%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++C  C +C  +C   AIT           +   R  ID   C  CG+C  ACP  AI
Sbjct: 21  NPDKCSGCGVCLPLCSYSAITWIE-------YKGKKRAHIDPALCTGCGVCVAACPSRAI 73

Query: 119 VE 120
           + 
Sbjct: 74  IL 75


>gi|323669543|gb|ABI30020.2| CarE [Acetobacterium woodii]
          Length = 396

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 12/58 (20%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           E+CI C  C+  CP  AITIE+               +    C  CG C + CP +AI
Sbjct: 8   EKCIGCSKCQKSCPFDAITIENKIA------------VIGDACTNCGTCIDVCPTEAI 53



 Score = 35.5 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           +   KCI C  CQ++CP DAI    
Sbjct: 5   VIEEKCIGCSKCQKSCPFDAITIEN 29


>gi|296446422|ref|ZP_06888366.1| formate dehydrogenase, alpha subunit [Methylosinus trichosporium
           OB3b]
 gi|296256057|gb|EFH03140.1| formate dehydrogenase, alpha subunit [Methylosinus trichosporium
           OB3b]
          Length = 958

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 29/103 (28%), Gaps = 10/103 (9%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ES 82
           + F        P  K   +           +     +CI C  C   C     T      
Sbjct: 147 HVFARNHGRINPEWKPKDTSN-------PYFTYDPSKCIVCNRCVRACAETQGTFALTID 199

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           G          V       +C+ CG C +ACP   ++E    E
Sbjct: 200 GRGFDSRVSPGVNEAYFESECVSCGACVQACPTATLIETSVIE 242


>gi|262165247|ref|ZP_06032984.1| electron transport complex protein RnfC [Vibrio mimicus VM223]
 gi|262024963|gb|EEY43631.1| electron transport complex protein RnfC [Vibrio mimicus VM223]
          Length = 825

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 28/109 (25%), Gaps = 20/109 (18%)

Query: 13  LKEFVGA---FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69
           L   +         L +          P  K +        + L    +    CI C  C
Sbjct: 333 LPRLIMGGPMMGFTLPH-------AQVPITKTANCILAPTRNELTNSDHEMA-CIRCGQC 384

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMI----KCIYCGLCQEACP 114
                  A  +   P+      +   +D         CI CG C   CP
Sbjct: 385 A-----DACPVSLLPQQLQWHAKAQEFDKCEELNLKDCIECGACAYVCP 428



 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 99  DMIKCIYCGLCQEACPV 115
             + CI CG C +ACPV
Sbjct: 374 HEMACIRCGQCADACPV 390


>gi|262171980|ref|ZP_06039658.1| electron transport complex protein RnfC [Vibrio mimicus MB-451]
 gi|261893056|gb|EEY39042.1| electron transport complex protein RnfC [Vibrio mimicus MB-451]
          Length = 867

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 28/109 (25%), Gaps = 20/109 (18%)

Query: 13  LKEFVGA---FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69
           L   +         L +          P  K +        + L    +    CI C  C
Sbjct: 333 LPRLIMGGPMMGFTLPH-------AQVPITKTANCILAPTRNELTNSDHEMA-CIRCGQC 384

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMI----KCIYCGLCQEACP 114
                  A  +   P+      +   +D         CI CG C   CP
Sbjct: 385 A-----DACPVSLLPQQLQWHAKAQEFDKCEELNLKDCIECGACAYVCP 428



 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 99  DMIKCIYCGLCQEACPV 115
             + CI CG C +ACPV
Sbjct: 374 HEMACIRCGQCADACPV 390


>gi|261211947|ref|ZP_05926233.1| electron transport complex protein RnfC [Vibrio sp. RC341]
 gi|260838555|gb|EEX65206.1| electron transport complex protein RnfC [Vibrio sp. RC341]
          Length = 825

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/109 (17%), Positives = 28/109 (25%), Gaps = 20/109 (18%)

Query: 13  LKEFVGA---FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69
           L   +         L +          P  K +        + L    +    CI C  C
Sbjct: 333 LPRLIMGGPMMGFTLPH-------AQVPITKTANCILAPTRNELTNSDHEMA-CIRCGQC 384

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMI----KCIYCGLCQEACP 114
                  A  +   P+      +   +D         CI CG C   CP
Sbjct: 385 A-----DACPVSLLPQQLQWHAKAQEFDKCEELNLKDCIECGACAYVCP 428



 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 99  DMIKCIYCGLCQEACPV 115
             + CI CG C +ACPV
Sbjct: 374 HEMACIRCGQCADACPV 390


>gi|118444335|ref|YP_877304.1| glycerol dehydratase activator [Clostridium novyi NT]
 gi|118134791|gb|ABK61835.1| glycerol dehydratase activator [Clostridium novyi NT]
          Length = 304

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 12/80 (15%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
             +  C+ C  C  +C + AI + S  R            ID  +CI CG C E CP +A
Sbjct: 54  YNKSLCLECGTCNEVCKSSAINLNSLNR------------IDRERCIACGKCVEHCPTEA 101

Query: 118 IVEGPNFEFATETRQELYYD 137
           +V         ET ++L  D
Sbjct: 102 LVMSGESVSVDETIEKLKKD 121


>gi|92118585|ref|YP_578314.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nitrobacter hamburgensis
           X14]
 gi|91801479|gb|ABE63854.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Nitrobacter
           hamburgensis X14]
          Length = 674

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 23/68 (33%), Gaps = 9/68 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E C  C  C + CP  A+  +                     C+ CGLCQ  CP   I
Sbjct: 517 DVEGCTLCLSCVSACPTGALYDDPE---------RPVLRFTEDACVQCGLCQATCPEKVI 567

Query: 119 VEGPNFEF 126
              P  +F
Sbjct: 568 KLVPQIDF 575



 Score = 41.2 bits (95), Expect = 0.046,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 11/54 (20%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           + C  C  +CP  AIT +                I+   C  CG C  ACP  A
Sbjct: 282 VGCHRCLDLCPTSAITPDGD-----------HVAINAEICAGCGQCAAACPTGA 324


>gi|56476992|ref|YP_158581.1| benzoyl-CoA oxygenase component A [Aromatoleum aromaticum EbN1]
 gi|56313035|emb|CAI07680.1| Benzoyl-CoA oxygenase component A [Aromatoleum aromaticum EbN1]
          Length = 416

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 11/60 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E CI C  CE  CP  AIT ++           + Y ++   C  C  C   CP  AI
Sbjct: 16  DPEICIRCNTCEETCPIDAITHDN-----------LNYVVNFDICNGCLACVPPCPTGAI 64



 Score = 35.5 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 16/39 (41%)

Query: 84  PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                      ++ ID   CI C  C+E CP+DAI    
Sbjct: 1   MNAPVEHAIAKQHLIDPEICIRCNTCEETCPIDAITHDN 39


>gi|219666776|ref|YP_002457211.1| reductive dehalogenase [Desulfitobacterium hafniense DCB-2]
 gi|19421900|gb|AAL87788.1|AF403184_13 reductive dehalogenase [Desulfitobacterium hafniense DCB-2]
 gi|219537036|gb|ACL18775.1| reductive dehalogenase [Desulfitobacterium hafniense DCB-2]
          Length = 488

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 33/100 (33%), Gaps = 21/100 (21%)

Query: 25  RYFFKAKT---TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
           R  F+ K    T + P                       + C  C  C   CPA+AIT +
Sbjct: 339 RMGFRNKVAAVTTDLPLVPDKP-----------IDFGMLDFCRVCMKCAENCPAEAITQD 387

Query: 82  SGPRCHDGT-------RRTVRYDIDMIKCIYCGLCQEACP 114
             P   +G        ++   +     + + CG C + CP
Sbjct: 388 KDPVAFNGYLRWNTDAKKCAEFRTGNEEGVNCGRCVKVCP 427


>gi|291521598|emb|CBK79891.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Coprococcus catus GD/7]
          Length = 594

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 37/97 (38%), Gaps = 15/97 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            LRY F+ +   +   +K           AL  Y    ++C  C LC   CP  AI+   
Sbjct: 511 TLRY-FRDEYIAHIVDKKCPAGVC----KALLSYKIDADKCKGCTLCARNCPNGAISG-- 563

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
                   +    + ID  KC+ CG C E C   AI 
Sbjct: 564 --------KLKEPHVIDQSKCLKCGACMEKCRFGAIY 592


>gi|253702709|ref|YP_003023898.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Geobacter sp. M21]
 gi|251777559|gb|ACT20140.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Geobacter sp. M21]
          Length = 1238

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 34/113 (30%), Gaps = 20/113 (17%)

Query: 31  KTTINYPFEKGSTS--PRFRGEHALRRYPNGEERCIACKLCEAICPA------------- 75
             +   P      S     +   A+      +E CI C  C  ICP              
Sbjct: 659 PVSAFSPDGVFPFSTARYEKRGVAINVPEWIKENCIQCNQCSYICPHATIRPFLATEEEL 718

Query: 76  -QAITIESGPRCHDGTRRTVRYDI--DMIKCIYCGLCQEACP--VDAIVEGPN 123
             A         +    +   + I    + C+ CG C + CP  V A+V  P 
Sbjct: 719 SGAPESFETIPANAKEIKGHGFRIQVYALDCMGCGNCADICPAKVSALVMKPI 771


>gi|239905422|ref|YP_002952161.1| putative NAD-reducing hydrogenase subunit [Desulfovibrio magneticus
           RS-1]
 gi|239795286|dbj|BAH74275.1| putative NAD-reducing hydrogenase subunit [Desulfovibrio magneticus
           RS-1]
          Length = 629

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/97 (28%), Positives = 33/97 (34%), Gaps = 17/97 (17%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGE-HALRRYPNGEERCIACKLCEAICPAQAITIE 81
            L++F           E         G   AL        RC  C+LC   CPA AIT E
Sbjct: 546 TLKHF------RKDYEEHVFEKRCSAGRCKALAMPTINAARCKGCRLCVKACPAGAITGE 599

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                         + ID   CI CG C  AC   A+
Sbjct: 600 KKQP----------HVIDETLCIKCGACATACKFGAV 626


>gi|210616158|ref|ZP_03290961.1| hypothetical protein CLONEX_03180 [Clostridium nexile DSM 1787]
 gi|210149920|gb|EEA80929.1| hypothetical protein CLONEX_03180 [Clostridium nexile DSM 1787]
          Length = 571

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 12/74 (16%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C  C  C   C  +AI++ +               I    CI+CG C E CP +A    
Sbjct: 10  NCRHCYKCVRNCSVKAISVRNEQAH-----------IIREACIHCGHCLEVCPQNAKTFS 58

Query: 122 PNFE-FATETRQEL 134
            + E      RQ +
Sbjct: 59  SDMERVKGYLRQGM 72


>gi|197285164|ref|YP_002151036.1| electron transport complex protein [Proteus mirabilis HI4320]
 gi|227355594|ref|ZP_03839989.1| NADH dehydrogenase (ubiquinone) [Proteus mirabilis ATCC 29906]
 gi|194682651|emb|CAR42772.1| electron transport complex protein [Proteus mirabilis HI4320]
 gi|227164390|gb|EEI49279.1| NADH dehydrogenase (ubiquinone) [Proteus mirabilis ATCC 29906]
          Length = 208

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 26/76 (34%), Gaps = 10/76 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ CI C  C   CP  AI   +             + I    C  C LC   CP D I
Sbjct: 113 DEDNCIGCTKCIQACPVDAIVGAT----------RAMHTIIEDLCTGCDLCVPPCPTDCI 162

Query: 119 VEGPNFEFATETRQEL 134
              P     +  + +L
Sbjct: 163 TLVPVKMTTSNWKWDL 178



 Score = 35.5 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C  C +ACPVDAI
Sbjct: 112 IDEDNCIGCTKCIQACPVDAI 132


>gi|89899039|ref|YP_521510.1| FAD/NAD(P)-binding oxidoreductase [Rhodoferax ferrireducens T118]
 gi|89343776|gb|ABD67979.1| benzoyl-CoA oxygenase, component A [Rhodoferax ferrireducens T118]
          Length = 423

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 11/68 (16%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            A++++    E CI C  CEAICP  AIT ++             Y +D  KC  C  C 
Sbjct: 7   QAIKQHLIDPEICIRCNTCEAICPVAAITHDT-----------RNYVVDADKCNLCMDCI 55

Query: 111 EACPVDAI 118
             CP  +I
Sbjct: 56  SPCPTGSI 63



 Score = 37.4 bits (85), Expect = 0.66,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)

Query: 98  IDMIKCIYCGLCQEACPVDAI-VEGPNF 124
           ID   CI C  C+  CPV AI  +  N+
Sbjct: 14  IDPEICIRCNTCEAICPVAAITHDTRNY 41


>gi|85860877|ref|YP_463079.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus
           aciditrophicus SB]
 gi|85723968|gb|ABC78911.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus
           aciditrophicus SB]
          Length = 642

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 26/64 (40%), Gaps = 10/64 (15%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             L  Y    E+C AC+LC   CPA AI               +   ID  KC  CG C 
Sbjct: 557 KELIAYVIDPEQCRACQLCVKKCPAGAIDGGKD----------LVSIIDQEKCTKCGTCF 606

Query: 111 EACP 114
           E CP
Sbjct: 607 EVCP 610



 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 19/45 (42%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
            I+         +  + Y ID  +C  C LC + CP  AI  G +
Sbjct: 545 HIKEKRCPALSCKELIAYVIDPEQCRACQLCVKKCPAGAIDGGKD 589


>gi|82703818|ref|YP_413384.1| electron transport complex, RnfABCDGE type, B subunit [Nitrosospira
           multiformis ATCC 25196]
 gi|82411883|gb|ABB75992.1| electron transport complex, RnfABCDGE type, B subunit [Nitrosospira
           multiformis ATCC 25196]
          Length = 259

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 28/82 (34%), Gaps = 10/82 (12%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E    +               E+ CI C +C  +CP  AI   +             + +
Sbjct: 62  EPLPLNTAHGVFKTKEVALIDEQACIGCTVCIQVCPVDAIVGAARQ----------MHTV 111

Query: 99  DMIKCIYCGLCQEACPVDAIVE 120
              +C  C LC E CPVD I  
Sbjct: 112 ISGECTGCSLCLEPCPVDCIQM 133


>gi|45359255|ref|NP_988812.1| polyferredoxin, associated with F420-non-reducing hydrogenase
           [Methanococcus maripaludis S2]
 gi|45048130|emb|CAF31248.1| polyferredoxin, associated with F420-non-reducing hydrogenase
           [Methanococcus maripaludis S2]
          Length = 383

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 28/75 (37%), Gaps = 1/75 (1%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E+C  C  C   CP  AI + +       +++      +   CI CG C   CP  A+  
Sbjct: 254 EKCAYCGPCAIKCPTGAIKVVNPKGLELPSKKKTEKANEFAMCIRCGACAMKCPTGALKM 313

Query: 121 GPN-FEFATETRQEL 134
           G    E     R E 
Sbjct: 314 GKMVHEGKEYARVEF 328



 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++CI C +C   CP  AI   +G       +    + ++  +CI C  C EACP   I
Sbjct: 144 DTDKCIYCTVCSQTCPWNAIF-VAGKLPQKRQKTIKSFTVNEEECIGCEKCVEACPGSMI 202



 Score = 42.4 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 3/66 (4%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           N    CI C  C   CP  A+ +    +     +   R +     C  CG C + CP   
Sbjct: 291 NEFAMCIRCGACAMKCPTGALKM---GKMVHEGKEYARVEFSPALCNECGECVDVCPQKT 347

Query: 118 IVEGPN 123
           +    +
Sbjct: 348 LELTGD 353



 Score = 38.5 bits (88), Expect = 0.32,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 1/69 (1%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK-CIYCGLCQEACP 114
           +P  +  C+ C+ C  ICPA+ I++              +  I + K C+ CG+C   CP
Sbjct: 72  FPYSKGHCVLCEKCVEICPAEIISLPGKAEKPKKEIIIPQEPIAVTKDCVACGVCVPECP 131

Query: 115 VDAIVEGPN 123
           VDAI     
Sbjct: 132 VDAISIEDI 140



 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 12/59 (20%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           + C+AC +C   CP  AI+IE                ID  KCIYC +C + CP +AI 
Sbjct: 118 KDCVACGVCVPECPVDAISIEDIAV------------IDTDKCIYCTVCSQTCPWNAIF 164



 Score = 35.1 bits (79), Expect = 3.1,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 11/89 (12%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           ++ +   EE CI C+ C   CP   I                        C  CGLC E+
Sbjct: 177 IKSFTVNEEECIGCEKCVEACPGSMIEYNGEKLGVK----------LPEACPACGLCVES 226

Query: 113 CPVDAIVEGPNFEFATE-TRQELYYDKER 140
           CPV+ I     +  A   T + L + +E+
Sbjct: 227 CPVEVISLEVEYASAKPVTDEGLVWSEEK 255



 Score = 34.3 bits (77), Expect = 6.2,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 25/78 (32%), Gaps = 17/78 (21%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDG-----------------TRRTVRYDIDMIK 102
            + CI C  C   CP  A+  + G    +G                  +   R+      
Sbjct: 19  FKTCIQCFSCATACPTGALVEKDGKLVFNGSKCDLDGACQKACPVGIKKVDDRFPYSKGH 78

Query: 103 CIYCGLCQEACPVDAIVE 120
           C+ C  C E CP + I  
Sbjct: 79  CVLCEKCVEICPAEIISL 96



 Score = 34.3 bits (77), Expect = 6.2,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 1/59 (1%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E C AC LC   CP + I++E                    KC YCG C   CP  AI
Sbjct: 214 PEACPACGLCVESCPVEVISLEVEYASAKPVTDEGLVW-SEEKCAYCGPCAIKCPTGAI 271


>gi|320353022|ref|YP_004194361.1| ferredoxin-dependent glutamate synthase [Desulfobulbus propionicus
           DSM 2032]
 gi|320121524|gb|ADW17070.1| ferredoxin-dependent glutamate synthase [Desulfobulbus propionicus
           DSM 2032]
          Length = 546

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 32/91 (35%), Gaps = 16/91 (17%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG-----TRRTVRY 96
            +S  +     +  +     RC  C  C A CP  AI++    +          RR   Y
Sbjct: 11  PSSLSYHDLPWIIEHRED--RCTLCGRCTAACPVGAISLSHFRQRVPKLDVLQKRRGSDY 68

Query: 97  DIDMI---------KCIYCGLCQEACPVDAI 118
                         +CI CG+C   CP +AI
Sbjct: 69  RHFTGIRQSTDIAKRCIGCGMCASVCPNEAI 99



 Score = 39.3 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 12/26 (46%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGP 122
           +    +C  CG C  ACPV AI    
Sbjct: 24  EHREDRCTLCGRCTAACPVGAISLSH 49


>gi|307297619|ref|ZP_07577425.1| hydrogenase, Fe-only [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916879|gb|EFN47261.1| hydrogenase, Fe-only [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 586

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 24/78 (30%), Gaps = 4/78 (5%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY---DIDMIKCIYCGLCQEACPV 115
              +CI C  C   C                    +      I    CI CG C   CPV
Sbjct: 142 DMNKCIDCGRCVRACDELQGLSILSSVNRGYHVLPLPALGAPIAATDCINCGQCSAVCPV 201

Query: 116 DAIVEGPNF-EFATETRQ 132
            AI E   F E   E R+
Sbjct: 202 GAITERMEFREVVAELRK 219


>gi|291460676|ref|ZP_06600066.1| electron transport complex, RnfABCDGE type, B subunit [Oribacterium
           sp. oral taxon 078 str. F0262]
 gi|291416635|gb|EFE90354.1| electron transport complex, RnfABCDGE type, B subunit [Oribacterium
           sp. oral taxon 078 str. F0262]
          Length = 296

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 29/89 (32%), Gaps = 12/89 (13%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
            K     P++K                      CIAC LCE  CP  AI +         
Sbjct: 189 KKLIALVPYKKKRLVACKNLLKGKDVRSACSIGCIACGLCEKNCPFDAIHVTDNLA---- 244

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                   +   KC  CG+C + CP  AI
Sbjct: 245 --------VMNEKCTDCGICAQKCPTGAI 265



 Score = 42.4 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 59  GEERCIACKLCEAICPAQ--AITIESGPRCHDGTRRTVRYDIDMIK---CIYCGLCQEAC 113
            +E+C AC  C   CP +  A+      R           D+       CI CGLC++ C
Sbjct: 173 DKEKCTACGACIKACPKKLIALVPYKKKRLVACKNLLKGKDVRSACSIGCIACGLCEKNC 232

Query: 114 PVDAIVEGPN 123
           P DAI    N
Sbjct: 233 PFDAIHVTDN 242


>gi|227827070|ref|YP_002828849.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.14.25]
 gi|238619235|ref|YP_002914060.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.16.4]
 gi|227458865|gb|ACP37551.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.14.25]
 gi|238380304|gb|ACR41392.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.16.4]
 gi|323474131|gb|ADX84737.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus REY15A]
 gi|323476798|gb|ADX82036.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus HVE10/4]
          Length = 104

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + CIA   C   CP         P      ++   ++     CI+C  C   CPV AI
Sbjct: 42  DFDVCIADGSCITACPVNVFRWFDTPGNPVSEKKADPFN--EQACIFCMACVNVCPVAAI 99

Query: 119 VEGP 122
              P
Sbjct: 100 DVKP 103


>gi|188589554|ref|YP_001922167.1| sulfite reductase, subunit C [Clostridium botulinum E3 str. Alaska
           E43]
 gi|188499835|gb|ACD52971.1| sulfite reductase, subunit C [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 321

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 24/88 (27%), Gaps = 8/88 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +         G   +      +ERC++C  C   C                     +
Sbjct: 145 CPNDCIKARMHDFGIIGMTEPQYNKERCVSCGACVRAC--------KKKSVDALKAVNYK 196

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPN 123
              +  KCI CG C   CP  A      
Sbjct: 197 VVRNEEKCIGCGECVINCPTGAWTRSKE 224


>gi|150020688|ref|YP_001306042.1| thiamine pyrophosphate binding domain-containing protein
           [Thermosipho melanesiensis BI429]
 gi|149793209|gb|ABR30657.1| thiamine pyrophosphate enzyme domain protein TPP-binding
           [Thermosipho melanesiensis BI429]
          Length = 642

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 26/76 (34%), Gaps = 9/76 (11%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           + +  L  +    E+C  CK+C       AI  +S            +  ID   C  CG
Sbjct: 574 KKKQKLPTFRVNPEKCTGCKVCITTFGCPAIFWDSE---------NKKAKIDPTMCWGCG 624

Query: 108 LCQEACPVDAIVEGPN 123
            C + CP  A      
Sbjct: 625 SCAQICPFGAFELVRE 640


>gi|85703437|ref|ZP_01034541.1| formate dehydrogenase, alpha subunit [Roseovarius sp. 217]
 gi|85672365|gb|EAQ27222.1| formate dehydrogenase, alpha subunit [Roseovarius sp. 217]
          Length = 924

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114
             + CI+C LC   C  +    +       G      +D    +    C+ CG C +ACP
Sbjct: 147 NLDACISCGLCVRACR-EVQVNDVIGMAGRGHDAYPVFDLADPMGASTCVACGECVQACP 205

Query: 115 VDAIV 119
             A++
Sbjct: 206 TGALM 210


>gi|170717802|ref|YP_001784865.1| electron transporter subunit RnfC [Haemophilus somnus 2336]
 gi|168825931|gb|ACA31302.1| electron transport complex, RnfABCDGE type, C subunit [Haemophilus
           somnus 2336]
          Length = 706

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 33/103 (32%), Gaps = 2/103 (1%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C   CP   +  +               +  + +CI CGLC   CP   I  
Sbjct: 379 QSCIRCSACSDACPVH-LMPQQLYWFARAEDHKKSEEYALKECIECGLCAYVCPSH-IPL 436

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
              F        E+    ++      R+E+   R    +   R
Sbjct: 437 IQYFRQEKAKIWEIKEKAQKSEEAKIRFEARQARLEKEEQERR 479


>gi|328956229|ref|YP_004373562.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Coriobacterium
           glomerans PW2]
 gi|328456553|gb|AEB07747.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Coriobacterium
           glomerans PW2]
          Length = 1177

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 17/104 (16%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-----QAITIESGPRCHDGTR- 91
           FE G+++   RG      + +   +CI C  C  +CP        +T E      +G R 
Sbjct: 673 FELGASAYEKRGVAVQVPHWDE-TKCIQCNQCAYVCPHATIRPFVLTDEEVAAAPEGLRT 731

Query: 92  --------RTVRYDI--DMIKCIYCGLCQEACPVDAIVEGPNFE 125
                   + +++ I    + C+ C  C + CP DA+      E
Sbjct: 732 LDAMGPKAKGMKFTIAVSPLDCMGCTNCAKVCPKDALTMQETSE 775


>gi|328952814|ref|YP_004370148.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
            protein [Desulfobacca acetoxidans DSM 11109]
 gi|328453138|gb|AEB08967.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
            protein [Desulfobacca acetoxidans DSM 11109]
          Length = 1029

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 24/66 (36%), Gaps = 10/66 (15%)

Query: 61   ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
              C  C  C AICP  A+++    R            I +  C  CGLC   CP  AI  
Sbjct: 955  PNCRRCLSCLAICPFGAVSLGEKGRP----------TIHVELCRGCGLCAAQCPAQAISM 1004

Query: 121  GPNFEF 126
                E 
Sbjct: 1005 SRLTEP 1010



 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 23/92 (25%), Gaps = 12/92 (13%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAIT-------IESGPRCHDGTRRTVRYDI 98
            FR     R        C  C  C  +CP +                        +   I
Sbjct: 105 DFRVVIHRRPRYVNISACTGCGECTRVCPVKMPDPYNQGLNQTKAIHLPFPQAVPLAAII 164

Query: 99  DMIKC-----IYCGLCQEACPVDAIVEGPNFE 125
           +   C       CG C + CP  AI      E
Sbjct: 165 NPQVCRFFQGKKCGACIKVCPAGAINLQEQPE 196


>gi|315651463|ref|ZP_07904486.1| pyruvate-ferredoxin oxidoreductase [Eubacterium saburreum DSM 3986]
 gi|315486283|gb|EFU76642.1| pyruvate-ferredoxin oxidoreductase [Eubacterium saburreum DSM 3986]
          Length = 1175

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 25/81 (30%), Gaps = 15/81 (18%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQ-----AITIESGPRCHDGT---------RRT 93
           RG        N  E CI C  C  +CP       A+T +      +G             
Sbjct: 681 RGIAVNMPIWN-SENCIQCGFCSYVCPHAVIRTIALTEDEADNAPEGMSVLPMTGMPNYK 739

Query: 94  VRYDIDMIKCIYCGLCQEACP 114
               +  + C  CG C   CP
Sbjct: 740 FTVAVSALDCTGCGSCANVCP 760


>gi|304410532|ref|ZP_07392150.1| formate dehydrogenase, alpha subunit [Shewanella baltica OS183]
 gi|307304625|ref|ZP_07584375.1| formate dehydrogenase, alpha subunit [Shewanella baltica BA175]
 gi|304351016|gb|EFM15416.1| formate dehydrogenase, alpha subunit [Shewanella baltica OS183]
 gi|306912027|gb|EFN42451.1| formate dehydrogenase, alpha subunit [Shewanella baltica BA175]
          Length = 1425

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 24/75 (32%), Gaps = 15/75 (20%)

Query: 59  GEERCIACKLCEAICPAQAITIE---------------SGPRCHDGTRRTVRYDIDMIKC 103
              RCI+C  C  +C  Q+                   S        R      +   KC
Sbjct: 647 DANRCISCGKCVDVCQLQSGHCAIQFAHDSYQALPQDLSETIERRAPRVGFSASMADSKC 706

Query: 104 IYCGLCQEACPVDAI 118
           + CG C + CP  A+
Sbjct: 707 VQCGNCVQVCPTGAL 721



 Score = 34.3 bits (77), Expect = 5.5,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 4/48 (8%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
            +C+ C  C  +CP  A+      R  D T       I    C YCG+
Sbjct: 704 SKCVQCGNCVQVCPTGALVDARDKRQGDETPLKTASTI----CTYCGV 747


>gi|262171465|ref|ZP_06039143.1| iron-sulfur cluster-binding protein [Vibrio mimicus MB-451]
 gi|261892541|gb|EEY38527.1| iron-sulfur cluster-binding protein [Vibrio mimicus MB-451]
          Length = 553

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 9/75 (12%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             C  C  C A+CP +A+                        C+ CGLC +ACP   +  
Sbjct: 418 SDCTLCMSCVAVCPTRALHPAGDSPA---------LRFIEQDCVQCGLCVKACPEQVLSA 468

Query: 121 GPNFEFATETRQELY 135
            P   +    RQ + 
Sbjct: 469 TPQLNWNKAARQGVV 483



 Score = 40.9 bits (94), Expect = 0.054,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 14/81 (17%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           C+ C   CPA A++ E   +         R  I+   C   G C  ACP +AI     + 
Sbjct: 186 CERCVDACPAGALSSEGSDQTGH------RIQINPYLCQGVGTCATACPTEAIH----YA 235

Query: 126 FA-TETRQELYYDKERLLNNG 145
                  Q+     ERLL N 
Sbjct: 236 LPNPTDTQKFI---ERLLANY 253



 Score = 33.9 bits (76), Expect = 7.1,   Method: Composition-based stats.
 Identities = 6/23 (26%), Positives = 8/23 (34%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIV 119
           +     C  C  C   CP  A+ 
Sbjct: 414 ECQTSDCTLCMSCVAVCPTRALH 436


>gi|251778554|ref|ZP_04821474.1| hydrogenase-1 [Clostridium botulinum E1 str. 'BoNT E Beluga']
 gi|243082869|gb|EES48759.1| hydrogenase-1 [Clostridium botulinum E1 str. 'BoNT E Beluga']
          Length = 576

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPV 115
              +C+ C  CEA C  +  T        +G ++    D    D   C+ CG C  ACPV
Sbjct: 144 DRSKCVLCGRCEAACSEKTATNSIKIIDDNGDKKVATIDGKCFDDTNCLLCGQCVAACPV 203

Query: 116 DAIVEGPNFE 125
           DA+ E  + E
Sbjct: 204 DALSEKSHTE 213



 Score = 35.5 bits (80), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 6/100 (6%)

Query: 20  FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI---CPAQ 76
             L      + K  I    EK   + + R    L ++      C   + CE +      +
Sbjct: 59  LALSCETLVQDKMVIRTDSEKVQEAIKLRVAEMLDKHEFKCGPCKRREDCEFLKLVIKTK 118

Query: 77  AITIES---GPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           A   +      +      R+    ID  KC+ CG C+ AC
Sbjct: 119 ARANKPFIVKDKSEYVDDRSKSIVIDRSKCVLCGRCEAAC 158


>gi|294892640|ref|XP_002774160.1| pyruvate:ferredoxin oxidoreductase/NADPH-cytochrome P450, putative
           [Perkinsus marinus ATCC 50983]
 gi|239879377|gb|EER05976.1| pyruvate:ferredoxin oxidoreductase/NADPH-cytochrome P450, putative
           [Perkinsus marinus ATCC 50983]
          Length = 1729

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 21/112 (18%)

Query: 59  GEERCIACKLCEAICPAQAI-----------------TIESGPRCHDGTRRTVRYDID-- 99
             ++C  C  C AICP   I                 T  + P         + + I   
Sbjct: 783 DVDKCTQCNKCSAICPHGVIRPFLASPQELASEKTPLTFVTKPATGGNEASGLAFRIQAS 842

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNN-GDRWES 150
            + C  C +C  ACP +A+   P  +   E  ++  +D    L N GDR+++
Sbjct: 843 PLDCTGCEVCVNACPDNALAMKPLPDAIAEGHKDN-WDFAMTLENRGDRFDA 893


>gi|167750622|ref|ZP_02422749.1| hypothetical protein EUBSIR_01599 [Eubacterium siraeum DSM 15702]
 gi|167656301|gb|EDS00431.1| hypothetical protein EUBSIR_01599 [Eubacterium siraeum DSM 15702]
          Length = 432

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 6/60 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            + +CI C  C   C       ++G +  D      +      KC+ C LC   CPV+ I
Sbjct: 369 DKNKCIGCGRCYIAC------YDAGHQALDFDAEARKPVFLGSKCVGCHLCATVCPVNCI 422


>gi|167622043|ref|YP_001672337.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Shewanella halifaxensis HAW-EB4]
 gi|167352065|gb|ABZ74678.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella
           halifaxensis HAW-EB4]
          Length = 559

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 24/74 (32%), Gaps = 9/74 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E C  C  C + CP  A+T                       C+ CGLC+ ACP   I
Sbjct: 425 NTENCTLCMSCVSTCPTMALTDGGDLPALH---------FVEQDCVQCGLCETACPEKVI 475

Query: 119 VEGPNFEFATETRQ 132
              P        RQ
Sbjct: 476 SLTPQVNLDKAARQ 489



 Score = 38.5 bits (88), Expect = 0.29,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 18/53 (33%), Gaps = 11/53 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C   CPA AI                  +ID   C   G C  ACP  AI
Sbjct: 196 CTRCLNFCPADAIASIEKK-----------IEIDPYLCHGAGSCTNACPTGAI 237


>gi|27262514|gb|AAN87538.1| Pyruvate-flavodoxin oxidoreductase [Heliobacillus mobilis]
          Length = 1169

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 27/83 (32%), Gaps = 17/83 (20%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITI------ESGPRCHDGTRRTV------- 94
           RG  A     N ++ CI C  C  +CP  AI        E                    
Sbjct: 675 RGVAAFVPEWN-KDTCIQCNQCSFVCPHAAIRPFLLNADEQAKAPESFETIKAIGKQLEG 733

Query: 95  ---RYDIDMIKCIYCGLCQEACP 114
              R  +  + C+ CG+C   CP
Sbjct: 734 LTYRMQVSPLDCMGCGVCAAVCP 756


>gi|15642809|ref|NP_227850.1| iron-sulfur cluster-binding protein [Thermotoga maritima MSB8]
 gi|170288707|ref|YP_001738945.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermotoga sp. RQ2]
 gi|281412096|ref|YP_003346175.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermotoga
           naphthophila RKU-10]
 gi|4980519|gb|AAD35128.1|AE001691_2 iron-sulfur cluster-binding protein [Thermotoga maritima MSB8]
 gi|170176210|gb|ACB09262.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermotoga
           sp. RQ2]
 gi|281373199|gb|ADA66761.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermotoga
           naphthophila RKU-10]
          Length = 357

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 14/70 (20%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E+C+AC  C   CP  AIT+    +            ID  KCI CG C   C   A   
Sbjct: 193 EKCVACGTCAKFCPVGAITVTKVAK------------IDYEKCIGCGQCIAMCSYGA--M 238

Query: 121 GPNFEFATET 130
            P ++ +T++
Sbjct: 239 SPKWDSSTDS 248



 Score = 35.5 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 10/36 (27%), Positives = 14/36 (38%)

Query: 87  HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                   +  +   KC+ CG C + CPV AI    
Sbjct: 179 KMEQHSESKPYVVEEKCVACGTCAKFCPVGAITVTK 214


>gi|150017309|ref|YP_001309563.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           beijerinckii NCIMB 8052]
 gi|149903774|gb|ABR34607.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           beijerinckii NCIMB 8052]
          Length = 437

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 21/56 (37%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            E  CI C  C   CP   I             +  + + +++ CI CG C   CP
Sbjct: 359 EESPCIRCGRCVEACPMGLIPSMLSILGERHKFKEAKEEYNLLNCIECGSCVYTCP 414


>gi|315126995|ref|YP_004068998.1| electron transport complex protein RnfB [Pseudoalteromonas sp.
           SM9913]
 gi|315015509|gb|ADT68847.1| electron transport complex protein RnfB [Pseudoalteromonas sp.
           SM9913]
          Length = 184

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 10/84 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E    +   + +         E+ CI C  C   CP  AI   +             + +
Sbjct: 90  EAKPLAGGEQADPVKTVAYIREDECIGCTKCIQACPVDAIVGATRQ----------MHTV 139

Query: 99  DMIKCIYCGLCQEACPVDAIVEGP 122
            + +C  C LC E CPVD I   P
Sbjct: 140 LIDECTGCDLCVEPCPVDCIDMLP 163


>gi|299143637|ref|ZP_07036717.1| putative 4Fe-4S ferredoxin, iron-sulfur binding protein
           [Peptoniphilus sp. oral taxon 386 str. F0131]
 gi|298518122|gb|EFI41861.1| putative 4Fe-4S ferredoxin, iron-sulfur binding protein
           [Peptoniphilus sp. oral taxon 386 str. F0131]
          Length = 271

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 33/114 (28%), Gaps = 17/114 (14%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGE---HALRRYPNGEERCIACKLCEAICPAQAITIES 82
              K       P+    T     G        +       CI CK+C   CP  +I  ++
Sbjct: 161 NLSKPNIIGEVPYRPYYTPRDRHGNGINFVKIKPKTDMSLCIDCKICARECPLGSINFDN 220

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN-FEFATETRQELY 135
                              KC+ C  C + CP  A       + F     +++Y
Sbjct: 221 VEEI-------------PGKCMKCCACIKKCPTGAKYFDDEGYLFHARELEDMY 261


>gi|288942376|ref|YP_003444616.1| RnfABCDGE type electron transport complex subunit C [Allochromatium
           vinosum DSM 180]
 gi|288897748|gb|ADC63584.1| electron transport complex, RnfABCDGE type, C subunit
           [Allochromatium vinosum DSM 180]
          Length = 504

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 23/81 (28%), Gaps = 4/81 (4%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNG---EERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93
           P  +        G  AL            CI C  C   CP   + +E       G    
Sbjct: 340 PSTRVPMVKGSNGVLALTAAEINGGTPRPCIRCAGCVQACPCGLVPLEMVAHIRAGDLEG 399

Query: 94  VRYDIDMIKCIYCGLCQEACP 114
                 M  CI CG C   CP
Sbjct: 400 AVKRGLMD-CIGCGSCAYVCP 419


>gi|300779506|ref|ZP_07089364.1| ferredoxin [Chryseobacterium gleum ATCC 35910]
 gi|300505016|gb|EFK36156.1| ferredoxin [Chryseobacterium gleum ATCC 35910]
          Length = 299

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           +   +ERC     C  ICP +A+T+  G        R +     +  CI CG+C+  CP 
Sbjct: 18  FQISQERCEGFSHCVNICPVEALTLVEGYVNEILNIRALYVQ--LDTCIMCGVCEPECPT 75

Query: 116 DAIVE 120
           +AI+ 
Sbjct: 76  EAIML 80


>gi|218782183|ref|YP_002433501.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218763567|gb|ACL06033.1| Electron transport complex protein, RnfC [Desulfatibacillum
           alkenivorans AK-01]
          Length = 422

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/56 (25%), Positives = 21/56 (37%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            +  CI C  C  +CPA+           +          D++ C+ CG C   CP
Sbjct: 343 EDASCINCGECIKVCPAKVPVNMMVRFLENQLYVDAAEKYDLLSCVDCGFCSFVCP 398



 Score = 35.1 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 97  DIDMIKCIYCGLCQEACP 114
           +I+   CI CG C + CP
Sbjct: 341 EIEDASCINCGECIKVCP 358


>gi|153003117|ref|YP_001377442.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Anaeromyxobacter sp. Fw109-5]
 gi|152026690|gb|ABS24458.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Anaeromyxobacter sp. Fw109-5]
          Length = 652

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 31/98 (31%), Gaps = 14/98 (14%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR--- 95
           E+ + +   R      +     E+C+ C  C  +CP   +++                  
Sbjct: 534 EEEAIAQGARCLVCHVQTIYDPEKCVLCGRCVDVCPEYCLSLVPIEELELPEEERRALVA 593

Query: 96  -----------YDIDMIKCIYCGLCQEACPVDAIVEGP 122
                         D  KCI CGLC   CP DA+    
Sbjct: 594 LARADGLPLSAMLKDEEKCIRCGLCAIRCPTDAMTMEH 631



 Score = 41.6 bits (96), Expect = 0.035,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 15/48 (31%), Gaps = 1/48 (2%)

Query: 77  AITIESGPRCHDGTRRTVRYDID-MIKCIYCGLCQEACPVDAIVEGPN 123
           A + E                I    KC+ CG C + CP   +   P 
Sbjct: 531 AFSEEEAIAQGARCLVCHVQTIYDPEKCVLCGRCVDVCPEYCLSLVPI 578


>gi|15899306|ref|NP_343911.1| ferredoxin (zfx-1) [Sulfolobus solfataricus P2]
 gi|284175250|ref|ZP_06389219.1| ferredoxin (zfx-1) [Sulfolobus solfataricus 98/2]
 gi|13815878|gb|AAK42701.1| Ferredoxin (zfx-1) [Sulfolobus solfataricus P2]
 gi|261601066|gb|ACX90669.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           solfataricus 98/2]
          Length = 104

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + CIA   C   CP         P      ++     ++   CI+C  C   CPV AI
Sbjct: 42  DFDLCIADGSCINACPVNVFQWYDTPGHPASEKKADP--VNEQACIFCMACVNVCPVAAI 99

Query: 119 VEGP 122
              P
Sbjct: 100 DVKP 103


>gi|296184817|ref|ZP_06853228.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
 gi|296050599|gb|EFG90022.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
          Length = 495

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 32/106 (30%), Gaps = 22/106 (20%)

Query: 35  NYPFEKGSTSPRFRGEHALRRY---------------PNGEERCIACKLCEAICPAQAIT 79
             P +K + +   RG    +                    +E C  C +C   CP  AI 
Sbjct: 98  KCPIDKYTVTDACRGCIQHKCMEVCPANAITRVAGSAYINQELCKECGMCRKSCPYGAIA 157

Query: 80  IESGPRCHDGTR-------RTVRYDIDMIKCIYCGLCQEACPVDAI 118
               P                    I+  +CI CG C  ACP  AI
Sbjct: 158 EVMRPCKRVCPTGALEINSDNKMAMIEKEECINCGACMAACPFGAI 203


>gi|241765323|ref|ZP_04763300.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidovorax
           delafieldii 2AN]
 gi|241364961|gb|EER59886.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidovorax
           delafieldii 2AN]
          Length = 584

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 10/76 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++RC  C  C + CPA A+             +  +       C+ CGLC   CP +AI
Sbjct: 451 DKDRCTLCLSCVSACPASALQDNP---------QLPQLRFIEQNCVQCGLCVTTCPENAI 501

Query: 119 VEGPNFEFATETRQEL 134
              P    A E R +L
Sbjct: 502 ALQPRLLLAPE-RAQL 516



 Score = 42.0 bits (97), Expect = 0.024,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 32/100 (32%), Gaps = 21/100 (21%)

Query: 19  AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78
              L LR            FEK       +   A  R        + C  C  IC A+AI
Sbjct: 168 GMLLRLRELVGE-------FEKPKFFAYKQKLCAHSRNET-----VGCNACVDICSAEAI 215

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +         R   +  ++   C+ CG C   CP  A+
Sbjct: 216 ASD---------RSRQQIKVNPNLCVGCGACTTVCPTGAL 246



 Score = 38.2 bits (87), Expect = 0.41,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           ID+  C  C  C  ACP +AI      + A
Sbjct: 75  IDLDLCTRCNACVAACPENAIGLDYQIDLA 104



 Score = 33.5 bits (75), Expect = 9.5,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 33/95 (34%), Gaps = 19/95 (20%)

Query: 47  FRGEHALRRYPN---GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103
           + G   L+   +     + C  C  C A CP  AI ++              Y ID+  C
Sbjct: 61  WLGAFELQWSADNPIDLDLCTRCNACVAACPENAIGLD--------------YQIDLAAC 106

Query: 104 IYCGLCQEACPVD-AIVEGPNFEFATETRQELYYD 137
                C +AC V  AI          + R +L  D
Sbjct: 107 QSHRACVKACQVAGAIDFNREAAQH-QDRFDLVLD 140


>gi|229580474|ref|YP_002838874.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus Y.G.57.14]
 gi|228011190|gb|ACP46952.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus Y.G.57.14]
          Length = 94

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 27/75 (36%), Gaps = 11/75 (14%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G   + +      +CI CK+C   CP   I   +G              +D   C  CG+
Sbjct: 30  GAWRIVKPVVDYNKCIGCKVCFMFCPESTIVPSNGKV-----------RVDYEYCKGCGV 78

Query: 109 CQEACPVDAIVEGPN 123
           C   CPV AI     
Sbjct: 79  CANVCPVKAISMVNE 93


>gi|261339954|ref|ZP_05967812.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterobacter
           cancerogenus ATCC 35316]
 gi|288317867|gb|EFC56805.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterobacter
           cancerogenus ATCC 35316]
          Length = 1174

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 34/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPLGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQA--------ITIESGPRCHD--------GTRRTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  A          +E+ P               +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVSPQDMEAAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|159110100|ref|XP_001705312.1| Nitroreductase family protein fused to ferredoxin domain Fd-NR1
           [Giardia lamblia ATCC 50803]
 gi|157433394|gb|EDO77638.1| Nitroreductase family protein fused to ferredoxin domain Fd-NR1
           [Giardia lamblia ATCC 50803]
          Length = 278

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 24/67 (35%), Gaps = 8/67 (11%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           R     E+ CI C +C   CP Q I + +  R      +          CI CG C   C
Sbjct: 3   RFPEVDEDLCIGCNVCVQGCPTQCIEVNAETRKLVFRAKET--------CISCGHCASVC 54

Query: 114 PVDAIVE 120
              AI  
Sbjct: 55  RTAAISM 61



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 6/36 (16%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           ++D   CI C +C + CP   I      E   ETR+
Sbjct: 6   EVDEDLCIGCNVCVQGCPTQCI------EVNAETRK 35


>gi|326561676|gb|EGE12013.1| RnfABCDGE type electron transport complex subunit B [Moraxella
           catarrhalis 103P14B1]
          Length = 275

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 28/100 (28%), Gaps = 12/100 (12%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            +       T    P +        R +    R    E  CI C  C   CP  AI   +
Sbjct: 80  TIANILNKPTKPATPSQWQIDPLTNRPKEV--RAIIQEADCIGCTKCIPACPVDAIVGTA 137

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                          I    C  C LC   CPVD I   P
Sbjct: 138 KHMHS----------IITDLCTGCELCLAPCPVDCIDVIP 167


>gi|332652330|ref|ZP_08418075.1| putative [Fe] hydrogenase, large subunit HymC [Ruminococcaceae
           bacterium D16]
 gi|332517476|gb|EGJ47079.1| putative [Fe] hydrogenase, large subunit HymC [Ruminococcaceae
           bacterium D16]
          Length = 564

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 3/68 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIESG-PRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPV 115
              +CI C  C  +C            R     R +  +  ++    CI CG C   CP 
Sbjct: 143 DPSKCILCGDCVRMCEETIGMGIIDFARRGYNMRVSPAFGRNLSETHCISCGQCAAVCPT 202

Query: 116 DAIVEGPN 123
            AI     
Sbjct: 203 GAITIYNQ 210


>gi|304314315|ref|YP_003849462.1| glutamate synthase, large subunit [Methanothermobacter marburgensis
           str. Marburg]
 gi|302587774|gb|ADL58149.1| predicted glutamate synthase, large subunit [Methanothermobacter
           marburgensis str. Marburg]
          Length = 619

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 11/53 (20%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           C+ C  CE +CP  AI I                +ID  KCI CG C  ACPV
Sbjct: 167 CVFCGTCEIVCPTDAIEIVED-----------HAEIDKTKCIMCGSCLAACPV 208



 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 103 CIYCGLCQEACPVDAIVEGPNF 124
           C++CG C+  CP DAI    + 
Sbjct: 167 CVFCGTCEIVCPTDAIEIVEDH 188



 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 7/76 (9%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R    L +   G    I C+ C     A+    ++  R +   +      ID   C+ C 
Sbjct: 28  RSAIFLNKMDTGYHA-IVCQQCVDPSCARGCFRDAIQRENGAVK------IDQESCVGCK 80

Query: 108 LCQEACPVDAIVEGPN 123
           LC   CP+ AI    +
Sbjct: 81  LCMLMCPIGAITYTDD 96


>gi|260892969|ref|YP_003239066.1| Cobyrinic acid ac-diamide synthase [Ammonifex degensii KC4]
 gi|260865110|gb|ACX52216.1| Cobyrinic acid ac-diamide synthase [Ammonifex degensii KC4]
          Length = 280

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 15/81 (18%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
                    +  ++    + +C  C +C  +C   AI                   +D +
Sbjct: 47  PVKEYEEPFYGSQQPVVDQNKCTRCGVCTQLCRFDAIDHGE---------------VDEL 91

Query: 102 KCIYCGLCQEACPVDAIVEGP 122
            C  CG+C   CP  AI   P
Sbjct: 92  NCEGCGVCFHGCPEKAITMEP 112



 Score = 34.3 bits (77), Expect = 6.0,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%)

Query: 84  PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
               +    + +  +D  KC  CG+C + C  DAI  G   E   E
Sbjct: 49  KEYEEPFYGSQQPVVDQNKCTRCGVCTQLCRFDAIDHGEVDELNCE 94


>gi|213417927|ref|ZP_03351018.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 194

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 25/78 (32%), Gaps = 12/78 (15%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            + C  C  C   CP   I  +                I   +C  CG C   CP  A+ 
Sbjct: 129 PQECRMCGACWRSCPENVIQFDDD-----------TLTIAAARCTGCGGCAAVCPHQALR 177

Query: 120 EGPNFEFATETRQELYYD 137
              + E A+ TR    + 
Sbjct: 178 LRFDVEPAS-TRHSAVHT 194


>gi|220928592|ref|YP_002505501.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Clostridium cellulolyticum H10]
 gi|219998920|gb|ACL75521.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Clostridium cellulolyticum H10]
          Length = 1176

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 32/111 (28%), Gaps = 29/111 (26%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDG--TR 91
           RG           E CI C +C  +CP                A       +        
Sbjct: 675 RGIAVNVPEWI-PETCIQCNICSLVCPHAVIRPTLATEEELKDAPESFVTKKAVGKGLEE 733

Query: 92  RTVRYDIDMIKCIYCGLCQEACPV--DAIVEG----------PNFEFATET 130
              R  I  + C  CG C + CP    A+V            PNF+F T  
Sbjct: 734 YQFRIQISPMDCTGCGNCADVCPAKPKALVMKKLSTQTEREIPNFDFVTRN 784


>gi|78223287|ref|YP_385034.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Geobacter metallireducens GS-15]
 gi|78194542|gb|ABB32309.1| tungsten-dependent benzoyl-CoA reductase-related protein bamH
           [Geobacter metallireducens GS-15]
          Length = 635

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 15/92 (16%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            +RY F+ +   +   +K            +  +    E+C AC  C   CPA+AI    
Sbjct: 533 TIRY-FRDEYEAHIREKKCPALSC----KEMIAFHIDPEKCKACGSCFRQCPAEAIQG-- 585

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                    + + + ID  KC  CG C + CP
Sbjct: 586 --------GKKLIHIIDQEKCTKCGTCLDVCP 609



 Score = 37.8 bits (86), Expect = 0.49,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 17/44 (38%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            I          +  + + ID  KC  CG C   CP +AI  G 
Sbjct: 544 HIREKKCPALSCKEMIAFHIDPEKCKACGSCFRQCPAEAIQGGK 587


>gi|56962674|ref|YP_174400.1| formate dehydrogenase alpha subunit [Bacillus clausii KSM-K16]
 gi|56908912|dbj|BAD63439.1| formate dehydrogenase alpha subunit [Bacillus clausii KSM-K16]
          Length = 985

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQE 111
            Y    ++CI C  C   C    +T            R +      ID   C+ CG C  
Sbjct: 139 FYRYDPDQCILCGRCVEACQDVQVTETLSIDWSLERPRVIWDKHSPIDESSCVNCGHCST 198

Query: 112 ACPVDAIVE 120
            CP +A++E
Sbjct: 199 VCPCNAMME 207



 Score = 42.4 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 24/68 (35%), Gaps = 8/68 (11%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTR----RTVRYDIDMIKCIY 105
           R   N E  C  C      CE     + + +      H   +    R   Y  D  +CI 
Sbjct: 90  RILGNHELYCTVCDYNNGNCEIHNAVKEMKMTHQETEHSSKKAEVQRNAFYRYDPDQCIL 149

Query: 106 CGLCQEAC 113
           CG C EAC
Sbjct: 150 CGRCVEAC 157


>gi|260220426|emb|CBA27952.1| Formate dehydrogenase subunit alpha [Curvibacter putative symbiont
           of Hydra magnipapillata]
          Length = 992

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 5/87 (5%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P  K     + + + +        + CI C  C   C  ++   +     + G    + +
Sbjct: 172 PELKALRREQPKADVSHPAMAVNLDACIQCNRCVRACR-ESQVNDVIGYANRGAHAEIVF 230

Query: 97  D----IDMIKCIYCGLCQEACPVDAIV 119
           D    +    C+ CG C +ACP  A++
Sbjct: 231 DLNDPMADSTCVACGECVQACPTGALM 257


>gi|294887311|ref|XP_002772046.1| pyruvate dehydrogenase, putative [Perkinsus marinus ATCC 50983]
 gi|239875984|gb|EER03862.1| pyruvate dehydrogenase, putative [Perkinsus marinus ATCC 50983]
          Length = 1871

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 21/112 (18%)

Query: 59  GEERCIACKLCEAICPAQAI-----------------TIESGPRCHDGTRRTVRYDID-- 99
             ++C  C  C AICP   I                 T  + P         + + I   
Sbjct: 783 DVDKCTQCNKCSAICPHGVIRPFLASPQELASEKTPLTFVTKPATGGNEASGLAFRIQAS 842

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNN-GDRWES 150
            + C  C +C  ACP +A+   P  +   E  ++  +D    L N GDR+++
Sbjct: 843 PLDCTGCEVCVNACPDNALTMKPLPDAIAEGHKDN-WDFAMTLENRGDRFDA 893


>gi|257065153|ref|YP_003144825.1| NADH:ubiquinone oxidoreductase chain G-like protein [Slackia
           heliotrinireducens DSM 20476]
 gi|256792806|gb|ACV23476.1| NADH:ubiquinone oxidoreductase chain G-like protein [Slackia
           heliotrinireducens DSM 20476]
          Length = 251

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 29/88 (32%), Gaps = 2/88 (2%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           R      E+CI C LC   C +      S        +    YD     C+ C  C   C
Sbjct: 120 RFVTIDNEKCILCGLCVQACNSLGTGAISTVNRGVDKKVDTPYDKPSEFCVGCLSCANVC 179

Query: 114 PVDAIVEGP-NFEFATETRQ-ELYYDKE 139
           P  AI     +       R+ +L   KE
Sbjct: 180 PTGAIGYTETDTTRTIWNREFDLVLCKE 207


>gi|254517630|ref|ZP_05129686.1| ferredoxin hydrogenase [Clostridium sp. 7_2_43FAA]
 gi|226911379|gb|EEH96580.1| ferredoxin hydrogenase [Clostridium sp. 7_2_43FAA]
          Length = 496

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 7/69 (10%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIKCIYCGLC 109
              +E C  C +C+  CP  AI     P             +   R  I    C+ CG C
Sbjct: 136 YINQELCKECGMCKKACPYDAIAEVMRPCKRVCPTGALDINQDDRRAMIKEETCVNCGSC 195

Query: 110 QEACPVDAI 118
             ACP  AI
Sbjct: 196 MSACPFGAI 204



 Score = 37.4 bits (85), Expect = 0.72,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 13/69 (18%)

Query: 54  RRYPNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
               +  + C  C    C   C   AIT  +G           R  I+   C  CG+C++
Sbjct: 102 INKYSVTDSCRNCLAHKCHEACNFGAITYVAG-----------RAYINQELCKECGMCKK 150

Query: 112 ACPVDAIVE 120
           ACP DAI E
Sbjct: 151 ACPYDAIAE 159


>gi|224369237|ref|YP_002603401.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Desulfobacterium
           autotrophicum HRM2]
 gi|223691954|gb|ACN15237.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Desulfobacterium
           autotrophicum HRM2]
          Length = 355

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 10/62 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + C  C+ C   C   AI ++                ++  +CI CGLC   CP  AI
Sbjct: 275 DSDLCTGCETCLERCQMDAILLDQDMHAL----------VNRDRCIGCGLCVTTCPTAAI 324

Query: 119 VE 120
             
Sbjct: 325 TL 326


>gi|206889382|ref|YP_002249517.1| hydrogenase [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206741320|gb|ACI20377.1| hydrogenase [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 465

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 10/92 (10%)

Query: 27  FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC 86
             +   T        S +  +R           E  C+ C  C ++CPA A+    G + 
Sbjct: 1   MVRKVNTFKGNGAVKSQTGTYRAGELRGIIKINEGNCVGCHTCSSVCPAGAVKGSFGDKH 60

Query: 87  HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                      ID+ KCI CG C   CP  A+
Sbjct: 61  S----------IDLDKCINCGQCLLNCPFGAV 82


>gi|253701454|ref|YP_003022643.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           M21]
 gi|251776304|gb|ACT18885.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           M21]
          Length = 614

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 34/108 (31%), Gaps = 17/108 (15%)

Query: 29  KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ------------ 76
           + + T+ +  EK +     R      +      RC+ C  C   C               
Sbjct: 498 REEITLGF-EEKEAREQAARCRQCSIQTVFDRSRCLLCGTCVDTCVHGTLKLVRLEDVEG 556

Query: 77  ----AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
               A    +  +   GTR       D  +C+ CG+C   CP  AI  
Sbjct: 557 DERFAQLTAALKKGAPGTRARTAIIKDETRCVSCGMCARRCPGGAITM 604


>gi|153005613|ref|YP_001379938.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Anaeromyxobacter sp. Fw109-5]
 gi|152029186|gb|ABS26954.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. Fw109-5]
          Length = 426

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  C  C+ C  +CP +A++  S        R   R D    +C+ CG+C  AC   AI
Sbjct: 289 EESACNGCEKCVRVCPVEAMSAVSANDPRHPKRTVARLD--EDRCLGCGVCVRACAPRAI 346

Query: 119 VEGP 122
              P
Sbjct: 347 ALRP 350


>gi|301061171|ref|ZP_07201960.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300444713|gb|EFK08689.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 433

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 7/67 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-------IDMIKCIYCGLCQE 111
            E +CI C+ CE  CP      E G             +       +D+  C  CG C +
Sbjct: 106 DEIKCIGCRQCEYNCPVYVPDEEQGGFAARKAIYIPFSNAIPQVALMDVENCTLCGKCAK 165

Query: 112 ACPVDAI 118
            CP  A+
Sbjct: 166 VCPTQAV 172


>gi|288935781|ref|YP_003439840.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Klebsiella variicola
           At-22]
 gi|288890490|gb|ADC58808.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Klebsiella variicola
           At-22]
          Length = 1175

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 31/142 (21%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       E  C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEALCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +                          +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVAPEEMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|262042923|ref|ZP_06016068.1| pyruvate-ferredoxin oxidoreductase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039763|gb|EEW40889.1| pyruvate-ferredoxin oxidoreductase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 1175

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 31/142 (21%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       E  C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEALCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +                          +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVAPEEMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|238894465|ref|YP_002919199.1| putative oxidoreductase Fe-S subunit [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238546781|dbj|BAH63132.1| putative oxidoreductase Fe-S subunit [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
          Length = 1175

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 31/142 (21%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       E  C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEALCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +                          +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVAPEEMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|229514922|ref|ZP_04404382.1| iron-sulfur cluster-binding protein [Vibrio cholerae TMA 21]
 gi|229347627|gb|EEO12586.1| iron-sulfur cluster-binding protein [Vibrio cholerae TMA 21]
          Length = 553

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 9/75 (12%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             C  C  C A+CP +A+                        C+ CGLC +ACP   +  
Sbjct: 418 SDCTLCMSCVAVCPTRALHPAGDSPA---------LRFIEQDCVQCGLCVKACPEQVLSA 468

Query: 121 GPNFEFATETRQELY 135
            P   +    RQ + 
Sbjct: 469 TPQLNWNKAARQGVV 483



 Score = 42.4 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 12/80 (15%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           C+ C   CPA A++ E   +         R  I+   C   G C  ACP +AI       
Sbjct: 186 CERCVDACPAGALSSEGSEQTGH------RIQINPYLCQGVGTCATACPTEAIH------ 233

Query: 126 FATETRQELYYDKERLLNNG 145
           +A     +     ERLL N 
Sbjct: 234 YALPNPADTQKFIERLLANY 253



 Score = 33.9 bits (76), Expect = 7.4,   Method: Composition-based stats.
 Identities = 6/23 (26%), Positives = 8/23 (34%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIV 119
           +     C  C  C   CP  A+ 
Sbjct: 414 ECQASDCTLCMSCVAVCPTRALH 436


>gi|206575856|ref|YP_002238852.1| putative pyruvate:ferredoxin (flavodoxin) oxidoreductase
           [Klebsiella pneumoniae 342]
 gi|206564914|gb|ACI06690.1| putative pyruvate:ferredoxin (flavodoxin) oxidoreductase
           [Klebsiella pneumoniae 342]
          Length = 1175

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 31/142 (21%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       E  C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEALCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +                          +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVAPEEMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|167768923|ref|ZP_02440976.1| hypothetical protein ANACOL_00240 [Anaerotruncus colihominis DSM
           17241]
 gi|167668563|gb|EDS12693.1| hypothetical protein ANACOL_00240 [Anaerotruncus colihominis DSM
           17241]
          Length = 501

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 21/64 (32%), Gaps = 9/64 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +  C  C+LCE  C   A              R  R   D  KC+ C  C   CP  A+
Sbjct: 15  DDAACTRCRLCERECANGAHGFND---------RQKRMTADNAKCVNCQRCVAICPTHAL 65

Query: 119 VEGP 122
               
Sbjct: 66  RIVK 69


>gi|163751795|ref|ZP_02159012.1| electron transport complex protein RnfC [Shewanella benthica KT99]
 gi|161328359|gb|EDP99519.1| electron transport complex protein RnfC [Shewanella benthica KT99]
          Length = 620

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 32/106 (30%), Gaps = 9/106 (8%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C+ C  C  +CP Q +  +                 ++  CI CG C   CP   I   
Sbjct: 383 PCVRCGECAHVCPVQ-LLPQQLFWHAQAQEYDKATKFNLADCIECGCCTYVCP-SEIPLV 440

Query: 122 PNFEFAT-------ETRQELYYDKERLLNNGDRWESEIVRNIVTDS 160
             +  A        E +++    K+R      R E E         
Sbjct: 441 EYYRIAKSAIKAEAEEKKQAELAKQRFDLRTQRLEDEKRAREEKQK 486


>gi|152969999|ref|YP_001335108.1| putative oxidoreductase, Fe-S subunit [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150954848|gb|ABR76878.1| putative oxidoreductase, Fe-S subunit [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
          Length = 1175

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 31/142 (21%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       E  C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEALCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +                          +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVAPEEMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|134290941|ref|YP_001114710.1| dihydropyrimidine dehydrogenase [Burkholderia vietnamiensis G4]
 gi|134134130|gb|ABO58455.1| dihydrouracil dehydrogenase (NAD+) / dihydropyrimidine
           dehydrogenase (NADP+) / dihydroorotate oxidase B,
           catalytic subunit [Burkholderia vietnamiensis G4]
          Length = 435

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 6/63 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117
            ++RCI C LC   C     + ++     DG R    +++   +C+ C LC   CPV   
Sbjct: 341 DQDRCIQCGLCHIACED--TSHQAITATKDGVR---HFEVVDAQCVGCNLCMHVCPVEQC 395

Query: 118 IVE 120
           I  
Sbjct: 396 ITM 398


>gi|300813869|ref|ZP_07094174.1| 4Fe-4S binding domain protein [Peptoniphilus sp. oral taxon 836
           str. F0141]
 gi|300512056|gb|EFK39251.1| 4Fe-4S binding domain protein [Peptoniphilus sp. oral taxon 836
           str. F0141]
          Length = 310

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/125 (20%), Positives = 39/125 (31%), Gaps = 24/125 (19%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTS----PRFRGEHALRRYPNG 59
            R  +  LF  +        L   F     +  PF K             + +  +    
Sbjct: 186 IRAALGKLFTWKLFVLLTFTLSSIF-----VYRPFCKFICPLGAFYGLFNKLSFLQMKVN 240

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            ++CI CK C   C       +               D +  +CI CG+C   CPV+AI 
Sbjct: 241 FDKCIGCKKCYKACKMDVDVCK---------------DPNHNECIRCGVCINVCPVEAIE 285

Query: 120 EGPNF 124
               F
Sbjct: 286 FRYGF 290


>gi|283853098|ref|ZP_06370353.1| NADH dehydrogenase (quinone) [Desulfovibrio sp. FW1012B]
 gi|283571496|gb|EFC19501.1| NADH dehydrogenase (quinone) [Desulfovibrio sp. FW1012B]
          Length = 491

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 18/51 (35%)

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                A  ++            + Y ID  KC  C LC + CPV+ I    
Sbjct: 412 FGHEYAAHVQDKKCPAHVCTAMLTYTIDPAKCTGCTLCTKVCPVECISGTK 462



 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 10/67 (14%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           A+  Y     +C  C LC  +CP + I+                + ID  KCI CG C +
Sbjct: 432 AMLTYTIDPAKCTGCTLCTKVCPVECISGTKKQP----------HTIDATKCIKCGACYD 481

Query: 112 ACPVDAI 118
            C  D+I
Sbjct: 482 KCKFDSI 488


>gi|262190854|ref|ZP_06049074.1| iron-sulfur cluster-binding protein [Vibrio cholerae CT 5369-93]
 gi|262033273|gb|EEY51791.1| iron-sulfur cluster-binding protein [Vibrio cholerae CT 5369-93]
          Length = 553

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 9/75 (12%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             C  C  C A+CP +A+                        C+ CGLC +ACP   +  
Sbjct: 418 SDCTLCMSCVAVCPTRALHPAGDSPA---------LRFIEQDCVQCGLCVKACPEQVLSA 468

Query: 121 GPNFEFATETRQELY 135
            P   +    RQ + 
Sbjct: 469 TPQLNWNKAARQGVV 483



 Score = 40.9 bits (94), Expect = 0.058,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 14/81 (17%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           C+ C   CPA A++ E   +         R  I+   C   G C  ACP +AI     + 
Sbjct: 186 CERCVDACPAGALSSEGSDQTGH------RIQINPYLCQGVGTCATACPTEAIH----YA 235

Query: 126 FA-TETRQELYYDKERLLNNG 145
                  Q+     ERLL N 
Sbjct: 236 LPNPTDTQKFI---ERLLANY 253



 Score = 33.9 bits (76), Expect = 7.4,   Method: Composition-based stats.
 Identities = 6/23 (26%), Positives = 8/23 (34%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIV 119
           +     C  C  C   CP  A+ 
Sbjct: 414 ECQASDCTLCMSCVAVCPTRALH 436


>gi|227498880|ref|ZP_03929020.1| ferredoxin [Acidaminococcus sp. D21]
 gi|226904332|gb|EEH90250.1| ferredoxin [Acidaminococcus sp. D21]
          Length = 301

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 7/63 (11%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
             +    CI+C LC   CP QAIT+E G              ID  KC+ CGLC + CP 
Sbjct: 210 MTDCGVSCISCGLCAKNCPKQAITMEDGVNGSIPV-------IDYDKCVGCGLCVQKCPR 262

Query: 116 DAI 118
             +
Sbjct: 263 KCL 265



 Score = 40.5 bits (93), Expect = 0.071,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 5/69 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQEAC 113
             ++C+ C  C + CP   I +           ++  +         + CI CGLC + C
Sbjct: 168 DYDKCVGCGACASTCPQFLIEMMKASNKVLVQCNNREKGKAAMTDCGVSCISCGLCAKNC 227

Query: 114 PVDAIVEGP 122
           P  AI    
Sbjct: 228 PKQAITMED 236



 Score = 40.5 bits (93), Expect = 0.081,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 17/60 (28%), Gaps = 10/60 (16%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C  C  C   C   A+ +                  D  KC+ CG C   CP   I    
Sbjct: 142 CFGCGACVDACSFGALAMGENGLP----------QFDYDKCVGCGACASTCPQFLIEMMK 191


>gi|237653891|ref|YP_002890205.1| electron transport complex protein RnfB [Thauera sp. MZ1T]
 gi|237625138|gb|ACR01828.1| electron transport complex, RnfABCDGE type, B subunit [Thauera sp.
           MZ1T]
          Length = 183

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 29/93 (31%), Gaps = 10/93 (10%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E    S     E         E+ CI C LC   CP  AI   +             + +
Sbjct: 89  EFKPLSEEHGVEKPKSVAVIDEQVCIGCTLCIQACPVDAIVGAAKQ----------MHTV 138

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
               C  C LC   CPVD I   P  E     +
Sbjct: 139 VEPLCTGCELCVAPCPVDCIAMVPLAETVHTWK 171


>gi|217966538|ref|YP_002352044.1| protein of unknown function DUF362 [Dictyoglomus turgidum DSM 6724]
 gi|217335637|gb|ACK41430.1| protein of unknown function DUF362 [Dictyoglomus turgidum DSM 6724]
          Length = 378

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 12/75 (16%)

Query: 47  FRGEHALRRYP-NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           F     +R+YP   +E+CI C++CE  CP +AIT +                ID  KCI 
Sbjct: 304 FLYNKFIRQYPVIEDEKCIKCRICENSCPNKAITYDPNKMI-----------IDYKKCIS 352

Query: 106 CGLCQEACPVDAIVE 120
           C  C E CP  AI  
Sbjct: 353 CFCCHELCPQKAIRL 367



 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 17/34 (50%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           I+  KCI C +C+ +CP  AI   PN       +
Sbjct: 316 IEDEKCIKCRICENSCPNKAITYDPNKMIIDYKK 349


>gi|168205052|ref|ZP_02631057.1| [Fe] hydrogenase [Clostridium perfringens E str. JGS1987]
 gi|170663376|gb|EDT16059.1| [Fe] hydrogenase [Clostridium perfringens E str. JGS1987]
          Length = 696

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 13/88 (14%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              EE+CI C  C+ IC                   ++    D+  CI CG C   CP  
Sbjct: 21  CRDEEKCIKCGSCKNICTD---------YIGVNGHYSLEKTNDIAVCINCGQCANVCPTS 71

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNN 144
           +I E  ++    +  Q+   DK++++  
Sbjct: 72  SITEVFDY----KKVQDSISDKDKIVIV 95


>gi|21886612|dbj|BAC05499.1| BssD [Thauera sp. DNT-1]
          Length = 383

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 6/74 (8%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           K         +   + Y    +RC++C  C A+CP  A  +  GPR     +      +D
Sbjct: 83  KCPWCHNPETQKVTKEYYYNRDRCVSCGRCAAVCPTGASQLVDGPRGTQTLK------LD 136

Query: 100 MIKCIYCGLCQEAC 113
             KC  C  C   C
Sbjct: 137 RDKCTNCMRCVAVC 150



 Score = 38.5 bits (88), Expect = 0.31,   Method: Composition-based stats.
 Identities = 9/47 (19%), Positives = 14/47 (29%)

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                       +  + T  Y  +  +C+ CG C   CP  A     
Sbjct: 79  GCPLKCPWCHNPETQKVTKEYYYNRDRCVSCGRCAAVCPTGASQLVD 125


>gi|59711541|ref|YP_204317.1| electron transport complex protein RnfB [Vibrio fischeri ES114]
 gi|197334877|ref|YP_002155697.1| electron transport complex protein RnfB [Vibrio fischeri MJ11]
 gi|75507049|sp|Q5E6B7|RNFB_VIBF1 RecName: Full=Electron transport complex protein rnfB
 gi|226735435|sp|B5FCN4|RNFB_VIBFM RecName: Full=Electron transport complex protein rnfB
 gi|59479642|gb|AAW85429.1| predicted iron-sulfur protein (Rnf/Rsx reducing system) [Vibrio
           fischeri ES114]
 gi|197316367|gb|ACH65814.1| electron transport complex protein RnfB [Vibrio fischeri MJ11]
          Length = 194

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 27/81 (33%), Gaps = 10/81 (12%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
            +S     +   +     E+ CI C  C   CP  AI   +             + +   
Sbjct: 93  PSSAHDEEKSIKKVAFIHEDMCIGCTKCIQACPVDAIVGGTK----------ALHTVIES 142

Query: 102 KCIYCGLCQEACPVDAIVEGP 122
           +C  C LC   CP D I   P
Sbjct: 143 ECTGCDLCVAPCPTDCIEMIP 163


>gi|78189907|ref|YP_380245.1| putative glutamate synthase (NADPH) small subunit [Chlorobium
           chlorochromatii CaD3]
 gi|78172106|gb|ABB29202.1| iron-sulfur cluster-binding protein, GltD family [Chlorobium
           chlorochromatii CaD3]
          Length = 579

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 6/59 (10%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           C  CK C + CP +AI+         G      YD    KC+ C LC   CP   I  G
Sbjct: 522 CFDCKQCVSFCPQEAISRFRD--NPVGEVVYTNYD----KCVGCHLCSLVCPSGYIQMG 574


>gi|22125976|ref|NP_669399.1| electron transport complex protein RnfB [Yersinia pestis KIM 10]
 gi|45441843|ref|NP_993382.1| electron transport complex protein RnfB [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108807599|ref|YP_651515.1| electron transport complex protein RnfB [Yersinia pestis Antiqua]
 gi|108811875|ref|YP_647642.1| electron transport complex protein RnfB [Yersinia pestis Nepal516]
 gi|149365836|ref|ZP_01887871.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis CA88-4125]
 gi|162420711|ref|YP_001606697.1| electron transport complex protein RnfB [Yersinia pestis Angola]
 gi|165927379|ref|ZP_02223211.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165938163|ref|ZP_02226722.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|166010629|ref|ZP_02231527.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166210969|ref|ZP_02237004.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|167400916|ref|ZP_02306422.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167420206|ref|ZP_02311959.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167425000|ref|ZP_02316753.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|218929341|ref|YP_002347216.1| electron transport complex protein RnfB [Yersinia pestis CO92]
 gi|229894931|ref|ZP_04510109.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis Pestoides A]
 gi|229897673|ref|ZP_04512829.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229898319|ref|ZP_04513466.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229902178|ref|ZP_04517299.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis Nepal516]
 gi|270490650|ref|ZP_06207724.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis KIM D27]
 gi|294503722|ref|YP_003567784.1| electron transport complex protein RnfB [Yersinia pestis Z176003]
 gi|24638185|sp|Q8ZEC9|RNFB_YERPE RecName: Full=Electron transport complex protein rnfB
 gi|122979617|sp|Q1C7K2|RNFB_YERPA RecName: Full=Electron transport complex protein rnfB
 gi|123073406|sp|Q1CIY8|RNFB_YERPN RecName: Full=Electron transport complex protein rnfB
 gi|226735436|sp|A9R8U7|RNFB_YERPG RecName: Full=Electron transport complex protein rnfB
 gi|21958920|gb|AAM85650.1|AE013811_3 hypothetical protein y2086 [Yersinia pestis KIM 10]
 gi|45436705|gb|AAS62259.1| putative iron-sulfur protein [Yersinia pestis biovar Microtus str.
           91001]
 gi|108775523|gb|ABG18042.1| iron-sulfur protein [Yersinia pestis Nepal516]
 gi|108779512|gb|ABG13570.1| putative iron-sulfur protein [Yersinia pestis Antiqua]
 gi|115347952|emb|CAL20874.1| putative iron-sulfur protein [Yersinia pestis CO92]
 gi|149292249|gb|EDM42323.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis CA88-4125]
 gi|162353526|gb|ABX87474.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis Angola]
 gi|165913824|gb|EDR32442.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|165920645|gb|EDR37893.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Orientalis str. F1991016]
 gi|165990331|gb|EDR42632.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Antiqua str. E1979001]
 gi|166208149|gb|EDR52629.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Antiqua str. B42003004]
 gi|166961901|gb|EDR57922.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Orientalis str. MG05-1020]
 gi|167049769|gb|EDR61177.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Antiqua str. UG05-0454]
 gi|167056187|gb|EDR65965.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis biovar Mediaevalis str. K1973002]
 gi|229681074|gb|EEO77169.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis Nepal516]
 gi|229688609|gb|EEO80678.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis biovar Orientalis str. India 195]
 gi|229694010|gb|EEO84059.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis biovar Orientalis str. PEXU2]
 gi|229702026|gb|EEO90047.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis Pestoides A]
 gi|262362158|gb|ACY58879.1| electron transport complex protein RnfB [Yersinia pestis D106004]
 gi|262365491|gb|ACY62048.1| electron transport complex protein RnfB [Yersinia pestis D182038]
 gi|270339154|gb|EFA49931.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia
           pestis KIM D27]
 gi|294354181|gb|ADE64522.1| electron transport complex protein RnfB [Yersinia pestis Z176003]
 gi|320014910|gb|ADV98481.1| inner membrane iron-sulfur protein in SoxR-reducing complex
           [Yersinia pestis biovar Medievalis str. Harbin 35]
          Length = 188

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 24/78 (30%), Gaps = 10/78 (12%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C  C   CP  AI   +             + +    C  C LC   CP D
Sbjct: 111 FIDEANCIGCTKCIQACPVDAIIGAT----------RAMHTVLSDLCTGCDLCVAPCPTD 160

Query: 117 AIVEGPNFEFATETRQEL 134
            I   P        + +L
Sbjct: 161 CIEMIPVATTTANWKWDL 178


>gi|330501362|ref|YP_004378231.1| formate dehydrogenase subunit alpha [Pseudomonas mendocina NK-01]
 gi|328915648|gb|AEB56479.1| formate dehydrogenase, alpha subunit [Pseudomonas mendocina NK-01]
          Length = 944

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 24/81 (29%), Gaps = 3/81 (3%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T      G             D    +C+ CG C  
Sbjct: 157 YFSYDPSKCIVCNRCVRACEEVQGTFALTIDGRGFDSRVAAGQAEDFLDSECVSCGACVN 216

Query: 112 ACPVDAIVEGPNFEFATETRQ 132
           ACP   ++E    E     R 
Sbjct: 217 ACPTATLMEKSVIELGQAERS 237


>gi|302039151|ref|YP_003799473.1| 2-ketoisovalerate ferredoxin reductase subunits gamma/delta
           [Candidatus Nitrospira defluvii]
 gi|300607215|emb|CBK43548.1| 2-ketoisovalerate ferredoxin reductase, fused gamma and delta
           subunit [Candidatus Nitrospira defluvii]
          Length = 305

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 10/65 (15%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ++C  C LC   CP   I++ +  R            ID   C  C +C   CP  A+V 
Sbjct: 243 DKCNGCWLCFVYCPDGVISMNTDDRPV----------IDYDHCKGCQICVHECPTHALVA 292

Query: 121 GPNFE 125
               E
Sbjct: 293 EREQE 297



 Score = 34.3 bits (77), Expect = 5.1,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 14/37 (37%)

Query: 87  HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
             G  RT R  +   KC  C LC   CP   I    +
Sbjct: 229 ETGGWRTFRPVLVADKCNGCWLCFVYCPDGVISMNTD 265


>gi|225025860|ref|ZP_03715052.1| hypothetical protein EUBHAL_00088 [Eubacterium hallii DSM 3353]
 gi|224956811|gb|EEG38020.1| hypothetical protein EUBHAL_00088 [Eubacterium hallii DSM 3353]
          Length = 307

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 12/78 (15%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C+ C  CE +CP  A  +             V   ID  KCI CG C + C   A+  
Sbjct: 60  QNCVGCGNCEVVCPTGASNL------------NVPGKIDHTKCIACGKCIDVCYHRALEM 107

Query: 121 GPNFEFATETRQELYYDK 138
              +    E   ELY D+
Sbjct: 108 SGKWMTVEELMGELYKDR 125



 Score = 34.3 bits (77), Expect = 6.5,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 13/51 (25%), Gaps = 8/51 (15%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
             C   C           +     +           C+ CG C+  CP  A
Sbjct: 34  NGCPLRCKWCCNPESQELKPVVMFK--------AQNCVGCGNCEVVCPTGA 76


>gi|254459827|ref|ZP_05073243.1| iron-sulfur cluster-binding protein [Rhodobacterales bacterium
           HTCC2083]
 gi|206676416|gb|EDZ40903.1| iron-sulfur cluster-binding protein [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 648

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 9/82 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + C  C  C ++CP+ A+   S            +       C+ CGLC   CP  AI
Sbjct: 496 DTDACTLCLSCVSLCPSGALGDNSD---------LPQLRFQEDACLQCGLCSNICPEKAI 546

Query: 119 VEGPNFEFATETRQELYYDKER 140
              P  +       +   ++E 
Sbjct: 547 TLKPQVDLTDNAFNQRVLNEEE 568



 Score = 38.9 bits (89), Expect = 0.25,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 11/53 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C  +CP  AIT                  ID + C  CG C   CP  AI
Sbjct: 276 CSNCLDVCPTGAITPAGE-----------HVSIDPMICAGCGSCSAVCPSGAI 317


>gi|167770396|ref|ZP_02442449.1| hypothetical protein ANACOL_01739 [Anaerotruncus colihominis DSM
           17241]
 gi|167667403|gb|EDS11533.1| hypothetical protein ANACOL_01739 [Anaerotruncus colihominis DSM
           17241]
          Length = 1181

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 24/72 (33%), Gaps = 14/72 (19%)

Query: 57  PNGEERCIACKLCEAICPAQA-----ITIESGPRCHDGTR---------RTVRYDIDMIK 102
               + CI C  C  +CP        +T E   +  +G +               I ++ 
Sbjct: 689 CWIPDNCIQCNFCSYVCPHAVIRPAVMTAEEAEKAPEGMKMVDMTGMPGYKFGMTISVLD 748

Query: 103 CIYCGLCQEACP 114
           C  CG C   CP
Sbjct: 749 CTGCGSCANVCP 760


>gi|164686674|ref|ZP_02210702.1| hypothetical protein CLOBAR_00269 [Clostridium bartlettii DSM
           16795]
 gi|164604064|gb|EDQ97529.1| hypothetical protein CLOBAR_00269 [Clostridium bartlettii DSM
           16795]
          Length = 455

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 10/77 (12%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              ++ C  C+ C  +CP  AIT E                ID  KC+ CG C + C   
Sbjct: 4   NIDKDLCTGCQECVKVCPVSAITGEPHKPQE----------IDADKCVICGQCVQVCKSY 53

Query: 117 AIVEGPNFEFATETRQE 133
           A +     EF T  +QE
Sbjct: 54  ASIIDHGEEFVTNKKQE 70



 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           +  +ID   C  C  C + CPV AI   P
Sbjct: 1   MIVNIDKDLCTGCQECVKVCPVSAITGEP 29


>gi|161527803|ref|YP_001581629.1| ATPase RIL [Nitrosopumilus maritimus SCM1]
 gi|160339104|gb|ABX12191.1| ABC transporter related [Nitrosopumilus maritimus SCM1]
          Length = 595

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 1/64 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E C   K C   C       +SG  C      + +  ID   C  CG+C + CP DAI
Sbjct: 9   DHELCQP-KKCGLECIKYCPVNKSGADCIVLNEESKKAQIDEDICNGCGICVKVCPFDAI 67

Query: 119 VEGP 122
               
Sbjct: 68  TIVN 71


>gi|149183199|ref|ZP_01861646.1| dihydropyrimidine dehydrogenase [Bacillus sp. SG-1]
 gi|148849095|gb|EDL63298.1| dihydropyrimidine dehydrogenase [Bacillus sp. SG-1]
          Length = 428

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 20/63 (31%), Gaps = 4/63 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117
             + CI C  C   C   +       +   G             C+ C LC   CPVD A
Sbjct: 338 NNDVCINCNKCHIACEDTSHQCIDMLKDSSGNSYLKV---REEDCVGCNLCSIVCPVDGA 394

Query: 118 IVE 120
           I  
Sbjct: 395 IDM 397


>gi|118443000|ref|YP_877778.1| hydrogenase (Fe) large chain [Clostridium novyi NT]
 gi|118133456|gb|ABK60500.1| hydrogenase (Fe) large chain [Clostridium novyi NT]
          Length = 443

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 10/66 (15%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
             Y    E+C+ C  C  +CP   I+           +   R+ ID  KC+ CG C  AC
Sbjct: 24  IFYFQITEKCVGCTKCARVCPVSCISG----------KVKERHVIDTTKCVKCGQCISAC 73

Query: 114 PVDAIV 119
           P+ A+ 
Sbjct: 74  PMGALP 79


>gi|317497875|ref|ZP_07956185.1| 4Fe-4S binding domain-containing protein [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316894856|gb|EFV17028.1| 4Fe-4S binding domain-containing protein [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 350

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 8/89 (8%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            L+   + E++C AC  C  ICP  +I+++         +      ID  KCI C LC++
Sbjct: 1   MLKSVLDDEKKCCACFSCMNICPKNSISMKKEKNGAIYPK------IDSEKCIGCHLCRK 54

Query: 112 ACPVDAIVEGPNFE--FATETRQELYYDK 138
            CP++   E    +  +AT ++ E  ++K
Sbjct: 55  VCPIENKAETEKLKKVYATYSKNEEIHEK 83


>gi|298674384|ref|YP_003726134.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Methanohalobium evestigatum Z-7303]
 gi|298287372|gb|ADI73338.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanohalobium evestigatum Z-7303]
          Length = 353

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 11/66 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E+C+ C+ C  +C   A+ +E G              +D   C   G C E+CP  AI
Sbjct: 188 EPEKCVGCETCIDMCAWGALKMEDGKAV-----------VDTELCKGEGFCVESCPEGAI 236

Query: 119 VEGPNF 124
           V   NF
Sbjct: 237 VPPENF 242


>gi|296452095|ref|ZP_06893806.1| nitroreductase fused to ferredoxin domain protein [Clostridium
           difficile NAP08]
 gi|296877451|ref|ZP_06901484.1| nitroreductase fused to ferredoxin domain protein [Clostridium
           difficile NAP07]
 gi|296259045|gb|EFH05929.1| nitroreductase fused to ferredoxin domain protein [Clostridium
           difficile NAP08]
 gi|296431463|gb|EFH17277.1| nitroreductase fused to ferredoxin domain protein [Clostridium
           difficile NAP07]
          Length = 260

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/95 (26%), Positives = 31/95 (32%), Gaps = 11/95 (11%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
                       +E CI C LC+  CP   I IE+               I    C+ CG
Sbjct: 1   MNMKYQHIIKVDKELCIGCGLCKNDCPVNNIIIENKKSV-----------IKKQDCLMCG 49

Query: 108 LCQEACPVDAIVEGPNFEFATETRQELYYDKERLL 142
            C   CP  AI      E   E   +   D + LL
Sbjct: 50  HCAAICPQKAITLTGFDEPPIELTNKPNLDSDELL 84


>gi|268323253|emb|CBH36841.1| putative pyruvate oxidoreductase, delta and gamma chain [uncultured
           archaeon]
          Length = 300

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/106 (20%), Positives = 35/106 (33%), Gaps = 21/106 (19%)

Query: 29  KAKTTINYPFEKGST-----------SPRFRGEHALRRYPNGEERCIACKLCEAICPAQA 77
           K  T I+ PFE  +              R  G   + R     + C  C +C + CP   
Sbjct: 202 KKSTVISVPFEPATVSSPAINATGNTPLRMTGNWRVFRPVWNYDSCTRCMICVSRCPDGC 261

Query: 78  ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           I +      +           D   C  C +C E CP +++ +   
Sbjct: 262 ILVNEDGFPYT----------DYDNCKGCLICVEECPTNSLGKVRE 297


>gi|227829887|ref|YP_002831666.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus L.S.2.15]
 gi|284997011|ref|YP_003418778.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Sulfolobus
           islandicus L.D.8.5]
 gi|227456334|gb|ACP35021.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus L.S.2.15]
 gi|284444906|gb|ADB86408.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Sulfolobus
           islandicus L.D.8.5]
          Length = 92

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 25/82 (30%), Gaps = 2/82 (2%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100
           G   P               + CIA   C   CP         P      ++   ++   
Sbjct: 12  GPVDPPKVLGIHGTIVGVDFDICIADGSCITACPVNVFRWTDTPGNPVSEKKADPFN--E 69

Query: 101 IKCIYCGLCQEACPVDAIVEGP 122
             CI+C  C   CPV AI   P
Sbjct: 70  QACIFCMACVNVCPVAAIDVKP 91


>gi|160903178|ref|YP_001568759.1| dihydroorotate dehydrogenase family protein [Petrotoga mobilis
           SJ95]
 gi|160360822|gb|ABX32436.1| dihydroorotate dehydrogenase family protein [Petrotoga mobilis
           SJ95]
          Length = 363

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 24/69 (34%), Gaps = 9/69 (13%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L      +E+C  C LC   C   AI +                 ID  KC  CGLC   
Sbjct: 303 LIFPAVNDEKCTECALCVKSCVYDAIHLIKELHSV---------RIDTNKCAGCGLCVTR 353

Query: 113 CPVDAIVEG 121
           C  +A+   
Sbjct: 354 CNFNALSLS 362


>gi|229541980|ref|ZP_04431040.1| dihydroorotate dehydrogenase family protein [Bacillus coagulans
           36D1]
 gi|229326400|gb|EEN92075.1| dihydroorotate dehydrogenase family protein [Bacillus coagulans
           36D1]
          Length = 426

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 21/65 (32%), Gaps = 4/65 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117
            EE CI C  C   C   A           G        +    C+ C LC   CP D A
Sbjct: 338 NEEHCIHCNKCYIACEDTAHQCIDRLVDTSGK---SILRVREEDCVGCNLCSLVCPSDGA 394

Query: 118 IVEGP 122
           I   P
Sbjct: 395 ITMIP 399


>gi|15639924|ref|NP_219375.1| pyruvate oxidoreductase [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189026162|ref|YP_001933934.1| pyruvate oxidoreductase [Treponema pallidum subsp. pallidum SS14]
 gi|3323259|gb|AAC65895.1| pyruvate oxidoreductase [Treponema pallidum subsp. pallidum str.
           Nichols]
 gi|189018737|gb|ACD71355.1| pyruvate oxidoreductase [Treponema pallidum subsp. pallidum SS14]
 gi|291060294|gb|ADD73029.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Treponema pallidum
           subsp. pallidum str. Chicago]
          Length = 1184

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 21/73 (28%), Gaps = 16/73 (21%)

Query: 58  NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRYDID--MI 101
                CI C  C  +CP                A +  +            ++ I     
Sbjct: 691 WDPSVCIQCGQCAMVCPHAVIRMKAYDGKELEHAPSKFASCDYKGKEFGEAKFTIQVSPE 750

Query: 102 KCIYCGLCQEACP 114
            C  CGLC + CP
Sbjct: 751 DCTGCGLCVQQCP 763



 Score = 37.0 bits (84), Expect = 0.87,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 11/35 (31%), Gaps = 4/35 (11%)

Query: 100 MIKCIYCGLCQEACPVDAIVE----GPNFEFATET 130
              CI CG C   CP   I      G   E A   
Sbjct: 693 PSVCIQCGQCAMVCPHAVIRMKAYDGKELEHAPSK 727


>gi|120597257|ref|YP_961831.1| glycyl-radical activating family protein [Shewanella sp. W3-18-1]
 gi|146291318|ref|YP_001181742.1| glycyl-radical activating family protein [Shewanella putrefaciens
           CN-32]
 gi|120557350|gb|ABM23277.1| glycyl-radical enzyme activating protein family [Shewanella sp.
           W3-18-1]
 gi|145563008|gb|ABP73943.1| glycyl-radical enzyme activating protein family [Shewanella
           putrefaciens CN-32]
          Length = 306

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 12/61 (19%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             CI C  C + CP  AI                   ID   CI+CG C E CP  A+V+
Sbjct: 59  RNCIHCGRCVSACPVGAIDASRQGL------------IDRNACIHCGACAEVCPAGAMVQ 106

Query: 121 G 121
            
Sbjct: 107 S 107



 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 3/42 (7%)

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           A    S P           YD     CI+CG C  ACPV AI
Sbjct: 38  ACKWCSNPESQHTEPEIFYYD---RNCIHCGRCVSACPVGAI 76


>gi|315186728|gb|EFU20486.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Spirochaeta
           thermophila DSM 6578]
          Length = 1195

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 20/73 (27%), Gaps = 16/73 (21%)

Query: 58  NGEERCIACKLCEAICPAQ----------------AITIESGPRCHDGTRRTVRYDIDMI 101
              + CI C  C A+CP                  A    +  +  D         I   
Sbjct: 693 WDPDVCIQCGDCSAVCPHAVIRLKVYEEKHLEGAPAGFKFTDAKGKDFAGLKFTIQISPE 752

Query: 102 KCIYCGLCQEACP 114
            C  CG C   CP
Sbjct: 753 DCTGCGACVNICP 765


>gi|307719342|ref|YP_003874874.1| pyruvate-flavodoxin oxidoreductase [Spirochaeta thermophila DSM
           6192]
 gi|306533067|gb|ADN02601.1| pyruvate-flavodoxin oxidoreductase [Spirochaeta thermophila DSM
           6192]
          Length = 1195

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 20/73 (27%), Gaps = 16/73 (21%)

Query: 58  NGEERCIACKLCEAICPAQ----------------AITIESGPRCHDGTRRTVRYDIDMI 101
              + CI C  C A+CP                  A    +  +  D         I   
Sbjct: 693 WDPDVCIQCGDCSAVCPHAVIRLKVYEEKHLEGAPAGFKFTDAKGKDFAGLKFTIQISPE 752

Query: 102 KCIYCGLCQEACP 114
            C  CG C   CP
Sbjct: 753 DCTGCGACVNICP 765


>gi|302344389|ref|YP_003808918.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfarculus
           baarsii DSM 2075]
 gi|301641002|gb|ADK86324.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfarculus
           baarsii DSM 2075]
          Length = 356

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 10/63 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++ C  C+ C   C  +AI +                 ID+ +CI CGLC   CP +A+
Sbjct: 276 DKDACTGCETCLDRCQMKAIVMGDDGLA----------RIDLDRCIGCGLCVTTCPTEAL 325

Query: 119 VEG 121
              
Sbjct: 326 TLQ 328



 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 4/67 (5%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            N    C  C  C  +    A+ +   P     +      D     C  C  C + C + 
Sbjct: 238 QNPAGMCNCCGDCCGVLR--ALNLHPKPAEIVFSNHFAVVD--KDACTGCETCLDRCQMK 293

Query: 117 AIVEGPN 123
           AIV G +
Sbjct: 294 AIVMGDD 300


>gi|302342304|ref|YP_003806833.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfarculus
           baarsii DSM 2075]
 gi|301638917|gb|ADK84239.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfarculus
           baarsii DSM 2075]
          Length = 352

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 11/63 (17%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
              E C+ C LCE  C     +                  ++M +CI CGLC   CP +A
Sbjct: 272 YDAEACVMCGLCEDRCQMDVFSPGDDAMI-----------LNMDRCIGCGLCVTTCPSEA 320

Query: 118 IVE 120
           +  
Sbjct: 321 LKL 323


>gi|302341919|ref|YP_003806448.1| molybdopterin oxidoreductase [Desulfarculus baarsii DSM 2075]
 gi|301638532|gb|ADK83854.1| molybdopterin oxidoreductase [Desulfarculus baarsii DSM 2075]
          Length = 376

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 5/75 (6%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCIYCGLC 109
                  RCI C  C + C    + +   P      +        R  +D  KC +CG C
Sbjct: 162 MIVRDFSRCIKCGRCVSACNDVQVNLAIAPPDEAALKAGLLESDWRPVVDYAKCTHCGQC 221

Query: 110 QEACPVDAIVEGPNF 124
            +ACPV A+ E   +
Sbjct: 222 IQACPVGALFEKKAY 236


>gi|270669404|ref|ZP_06222601.1| Electron transport complex protein rnfB [Haemophilus influenzae
           HK1212]
 gi|270316570|gb|EFA28404.1| Electron transport complex protein rnfB [Haemophilus influenzae
           HK1212]
          Length = 180

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 22/66 (33%), Gaps = 10/66 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C  C   CP  AI   +             + I    C  C LC   CP D
Sbjct: 96  FIDENMCIGCTKCIQACPVDAIIGTNK----------AMHTIIPDLCTGCELCVAPCPTD 145

Query: 117 AIVEGP 122
            I+  P
Sbjct: 146 CILMIP 151


>gi|261880458|ref|ZP_06006885.1| electron transport complex [Prevotella bergensis DSM 17361]
 gi|270332797|gb|EFA43583.1| electron transport complex [Prevotella bergensis DSM 17361]
          Length = 313

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 26/86 (30%), Gaps = 11/86 (12%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P  +         +         +  CI C  C   C   AI IE+              
Sbjct: 198 PKNRRIYVQCVNMDKGAVARKACQVACIGCGKCLKACRFDAINIENNLSY---------- 247

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGP 122
            ID  KC  C  C + CP +AI    
Sbjct: 248 -IDYSKCKLCTKCVDECPTNAIAMVN 272



 Score = 39.3 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 29/80 (36%), Gaps = 14/80 (17%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK-----------CIYCGLCQE 111
           C +C  C   CP     I    +     RR     ++M K           CI CG C +
Sbjct: 176 CTSCGACVKACP---RHIIELRKKGPKNRRIYVQCVNMDKGAVARKACQVACIGCGKCLK 232

Query: 112 ACPVDAIVEGPNFEFATETR 131
           AC  DAI    N  +   ++
Sbjct: 233 ACRFDAINIENNLSYIDYSK 252


>gi|218130737|ref|ZP_03459541.1| hypothetical protein BACEGG_02328 [Bacteroides eggerthii DSM 20697]
 gi|217987081|gb|EEC53412.1| hypothetical protein BACEGG_02328 [Bacteroides eggerthii DSM 20697]
          Length = 427

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 7/65 (10%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C  C  C  IC   AI I                 ID  KCI CGLCQ+ACP+   + 
Sbjct: 12  KYCTGCMACSDICRHDAIKIVERNCLPF-------VQIDADKCINCGLCQKACPIVTPIN 64

Query: 121 GPNFE 125
              FE
Sbjct: 65  KNRFE 69


>gi|156089325|ref|XP_001612069.1| ABC transporter, ATP-binding domain containing protein [Babesia
           bovis]
 gi|154799323|gb|EDO08501.1| ABC transporter, ATP-binding domain containing protein [Babesia
           bovis]
          Length = 616

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 1/70 (1%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           LR      ++C   K C   C       ++G +C      +    I    CI CG+C + 
Sbjct: 20  LRVAIVSTDKCKP-KKCRQECKRNCPVAKAGKQCIIADPTSKIAFISETLCIGCGICVKK 78

Query: 113 CPVDAIVEGP 122
           CP +AI    
Sbjct: 79  CPFEAITIIN 88


>gi|126731572|ref|ZP_01747378.1| dihydropyrimidine dehydrogenase [Sagittula stellata E-37]
 gi|126708108|gb|EBA07168.1| dihydropyrimidine dehydrogenase [Sagittula stellata E-37]
          Length = 434

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 8/76 (10%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI C  C A C       E              ++++  +C+ 
Sbjct: 330 QYLNLNYITKARIDQDACIKCGRCFAAC-------EDTSHQAIWMHEDRTFEVNDAECVA 382

Query: 106 CGLCQEACPV-DAIVE 120
           C LC + CPV D I  
Sbjct: 383 CNLCLDVCPVEDCITM 398


>gi|114705202|ref|ZP_01438110.1| probable nad-dependent formate dehydrogenase alpha subunit protein
           [Fulvimarina pelagi HTCC2506]
 gi|114539987|gb|EAU43107.1| probable nad-dependent formate dehydrogenase alpha subunit protein
           [Fulvimarina pelagi HTCC2506]
          Length = 948

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 4/75 (5%)

Query: 55  RYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            +     +CI C  C   C       A+T+E        +  T   +    +C+ CG C 
Sbjct: 159 YFTFDSSKCIVCSRCVRACNEVQGTFALTVEGRGFDSRISAGTPVDEFLTSECVSCGACV 218

Query: 111 EACPVDAIVEGPNFE 125
           +ACP +A+ E    E
Sbjct: 219 QACPTEALQEKTVKE 233


>gi|88706626|ref|ZP_01104329.1| Electron transport complex protein rnfC [Congregibacter litoralis
           KT71]
 gi|88699122|gb|EAQ96238.1| Electron transport complex protein rnfC [Congregibacter litoralis
           KT71]
          Length = 587

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 29/96 (30%), Gaps = 9/96 (9%)

Query: 19  AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78
              + L            P  K +      G   L   P   + CI C LC   CPA+ +
Sbjct: 331 MMGVTL-------ADHRCPVIKTTNCLLVPGPGELPE-PEPAQACIRCGLCAEACPAR-L 381

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
             +               +  +  CI CG C   CP
Sbjct: 382 LPQQLYWFARAQNHEQLEEHHLFDCIECGACSYVCP 417


>gi|320160663|ref|YP_004173887.1| bidirectional hydrogenase U subunit [Anaerolinea thermophila UNI-1]
 gi|319994516|dbj|BAJ63287.1| bidirectional hydrogenase U subunit [Anaerolinea thermophila UNI-1]
          Length = 240

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 28/83 (33%), Gaps = 4/83 (4%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDID 99
              PRF  + +  +Y     RCI C  C  +C     A T +   R       T      
Sbjct: 132 YLHPRFMLDGSHPKYEVDHNRCILCGRCVRVCEEIEGAHTRDLRNRGIRTMVITDFDTPW 191

Query: 100 MIK--CIYCGLCQEACPVDAIVE 120
                C  CG C   CP  A+ E
Sbjct: 192 GESPTCTGCGKCVHVCPTGALAE 214


>gi|312137143|ref|YP_004004480.1| ABC transporter [Methanothermus fervidus DSM 2088]
 gi|311224862|gb|ADP77718.1| ABC transporter related protein [Methanothermus fervidus DSM 2088]
          Length = 592

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++RC   K C  +C      +  G       ++T +  I    C  CG+C + CP DAI
Sbjct: 8   DKDRCQP-KKCGYLCLEYCPGVRMGEDTIVIHKKTKKPIISEKLCSGCGICVKKCPFDAI 66

Query: 119 VEGPNFE 125
                 E
Sbjct: 67  NIINLPE 73


>gi|296102198|ref|YP_003612344.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing
           protein [Enterobacter cloacae subsp. cloacae ATCC 13047]
 gi|295056657|gb|ADF61395.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing
           protein [Enterobacter cloacae subsp. cloacae ATCC 13047]
          Length = 1174

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           P  A                   +++   R   G +      +    C  C LC E CP 
Sbjct: 700 PHSAIRAKVVSPDAMESAPSSLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757

Query: 116 --------DAIVEGPNFEFATETR 131
                    AI      E   E +
Sbjct: 758 KDRQNPDIKAINMMSRLEHVEEEK 781


>gi|283833001|ref|ZP_06352742.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Citrobacter
           youngae ATCC 29220]
 gi|291071613|gb|EFE09722.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Citrobacter
           youngae ATCC 29220]
          Length = 1174

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           P  A                   +++   R   G +      +    C  C LC E CP 
Sbjct: 700 PHSAIRAKVVSPEAMESAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757

Query: 116 --------DAIVEGPNFEFATETR 131
                    AI      E   E +
Sbjct: 758 KDRQNPEIKAINMMSRLEHVEEEK 781


>gi|237859143|gb|ACR23747.1| RnfB [Acetobacterium woodii DSM 1030]
          Length = 333

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 28/63 (44%), Gaps = 9/63 (14%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E CIAC LC   CP  AIT E              Y ID   CI CG+C + C   AI  
Sbjct: 277 ENCIACGLCAKNCPVNAITGEIKKPP---------YVIDHDMCIGCGICFDKCRKSAIEM 327

Query: 121 GPN 123
            PN
Sbjct: 328 RPN 330



 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 34/105 (32%), Gaps = 22/105 (20%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P  +         +       +    CIAC  C   C   AIT+E+     D  +    
Sbjct: 190 VPEAQEVIVKCHNFDKGKIARLSCTTACIACGACVKACRFDAITVENNCAKIDYDKCRQC 249

Query: 96  YD----------------------IDMIKCIYCGLCQEACPVDAI 118
           Y+                      I    CI CGLC + CPV+AI
Sbjct: 250 YECVDKCPMNCISGDVEYGKSTAYIIEENCIACGLCAKNCPVNAI 294



 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 5/78 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQEAC 113
             E+C +C  C   CP   +T+    +      H+  +  +        CI CG C +AC
Sbjct: 168 DPEKCTSCGKCVEACPKSIMTLVPEAQEVIVKCHNFDKGKIARLSCTTACIACGACVKAC 227

Query: 114 PVDAIVEGPNFEFATETR 131
             DAI    N       +
Sbjct: 228 RFDAITVENNCAKIDYDK 245



 Score = 35.5 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 10/65 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C+    C+A+CP  AI I                 +D  KC  CG C EACP   +
Sbjct: 138 CRYGCLGYGTCKAVCPFDAIVIGEDGLPK----------VDPEKCTSCGKCVEACPKSIM 187

Query: 119 VEGPN 123
              P 
Sbjct: 188 TLVPE 192


>gi|237731645|ref|ZP_04562126.1| pyruvate-flavodoxin oxidoreductase [Citrobacter sp. 30_2]
 gi|226907184|gb|EEH93102.1| pyruvate-flavodoxin oxidoreductase [Citrobacter sp. 30_2]
          Length = 1174

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           P  A                   +++   R   G +      +    C  C LC E CP 
Sbjct: 700 PHSAIRAKVVSPEAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757

Query: 116 --------DAIVEGPNFEFATETR 131
                    AI      E   E +
Sbjct: 758 KDRQNPEIKAINMMSRLEHVEEEK 781


>gi|197117746|ref|YP_002138173.1| electron transfer flavoprotein subunit alpha [Geobacter
           bemidjiensis Bem]
 gi|197087106|gb|ACH38377.1| electron transfer flavoprotein, alpha subunit [Geobacter
           bemidjiensis Bem]
          Length = 452

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 43/122 (35%), Gaps = 30/122 (24%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACK-LCEAICPAQAITIESGPRCHDGTRRTVRYD 97
           E      + RG+  L      E +CIAC   C++ CP   I +                 
Sbjct: 3   EAKPKLKKPRGKVRLL-----EGKCIACGARCQSSCPVDGIQMSDAGEP----------Q 47

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIV 157
           I++ KCI C  C +ACP  A+              E++Y KE L         + +    
Sbjct: 48  IELSKCIGCLKCVKACPGSAL--------------EIFYTKEELEILAALAGQQDLAEDE 93

Query: 158 TD 159
            D
Sbjct: 94  AD 95


>gi|158521885|ref|YP_001529755.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfococcus oleovorans Hxd3]
 gi|158510711|gb|ABW67678.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus
           oleovorans Hxd3]
          Length = 362

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 11/62 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + C  C  C   C  +A+T+++       +            CI CG C  ACP +A+
Sbjct: 292 NPDNCTGCGTCVEHCQMEALTLDNDMVVLQESW-----------CIGCGNCAGACPSEAL 340

Query: 119 VE 120
           V 
Sbjct: 341 VM 342


>gi|87118385|ref|ZP_01074284.1| electron transport complex protein RnfC [Marinomonas sp. MED121]
 gi|86166019|gb|EAQ67285.1| electron transport complex protein RnfC [Marinomonas sp. MED121]
          Length = 1251

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 6/79 (7%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C +CE  CPA  +  +                 ++  CI CG C   CP  +I  
Sbjct: 372 QACIRCGMCEQACPAS-LLPQQLLWFSKSQEHEKAEHHNLFDCIECGACSYVCP-SSIPL 429

Query: 121 GPNFEFAT----ETRQELY 135
              +        E+R+   
Sbjct: 430 VQYYRHTKSAIRESREAAV 448


>gi|313148174|ref|ZP_07810367.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Bacteroides fragilis 3_1_12]
 gi|313136941|gb|EFR54301.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Bacteroides fragilis 3_1_12]
          Length = 387

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 6/56 (10%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
             C  C  C ++C   AI ++   +        +   I+  +CI CGLC + CPV 
Sbjct: 8   YDCCGCTACASVCNKGAIIMQEDEQG------FLYPHINTTQCINCGLCNKVCPVF 57


>gi|294501167|ref|YP_003564867.1| dihydroorotate dehydrogenase [Bacillus megaterium QM B1551]
 gi|294351104|gb|ADE71433.1| dihydroorotate dehydrogenase [Bacillus megaterium QM B1551]
          Length = 426

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 20/63 (31%), Gaps = 4/63 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117
             + CI C  C   C   +       +   G             C+ C LC   CPVD A
Sbjct: 338 DPDTCINCNKCHISCEDTSHQCIDMLKDPSGKSYLKV---REEDCVGCNLCSIVCPVDGA 394

Query: 118 IVE 120
           I  
Sbjct: 395 ISM 397


>gi|262402646|ref|ZP_06079207.1| electron transport complex protein RnfC [Vibrio sp. RC586]
 gi|262351428|gb|EEZ00561.1| electron transport complex protein RnfC [Vibrio sp. RC586]
          Length = 830

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 20/61 (32%), Gaps = 9/61 (14%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI----KCIYCGLCQEAC 113
           + E  CI C  C       A  +   P+      +   +D         CI CG C   C
Sbjct: 373 DHEMACIRCGQCA-----DACPVSLLPQQLQWHAKAQEFDKCEELNLKDCIECGACAYVC 427

Query: 114 P 114
           P
Sbjct: 428 P 428



 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 99  DMIKCIYCGLCQEACPV 115
             + CI CG C +ACPV
Sbjct: 374 HEMACIRCGQCADACPV 390


>gi|258627117|ref|ZP_05721913.1| RnfC-related protein [Vibrio mimicus VM603]
 gi|258580635|gb|EEW05588.1| RnfC-related protein [Vibrio mimicus VM603]
          Length = 820

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 20/61 (32%), Gaps = 9/61 (14%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI----KCIYCGLCQEAC 113
           + E  CI C  C       A  +   P+      +   +D         CI CG C   C
Sbjct: 373 DHEMACIRCGQCA-----DACPVSLLPQQLQWHAKAQEFDKCEELNLKDCIECGACAYVC 427

Query: 114 P 114
           P
Sbjct: 428 P 428



 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 99  DMIKCIYCGLCQEACPV 115
             + CI CG C +ACPV
Sbjct: 374 HEMACIRCGQCADACPV 390


>gi|297568097|ref|YP_003689441.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296924012|gb|ADH84822.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 606

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 54  RRYPNGEERCIACKLC----EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
           + + +  E C  C +C          Q +T E         ++     I+   CI CG C
Sbjct: 531 KPFHSVTENCTGCTMCLRLGCPAINWQPLTPEEAKAMGKKEKQKGYALINEDMCIGCGQC 590

Query: 110 QEACPVDAI 118
            E C  +AI
Sbjct: 591 YELCKFEAI 599


>gi|253688411|ref|YP_003017601.1| electron transport complex, RnfABCDGE type, B subunit
           [Pectobacterium carotovorum subsp. carotovorum PC1]
 gi|259493852|sp|C6DH16|RNFB_PECCP RecName: Full=Electron transport complex protein rnfB
 gi|251754989|gb|ACT13065.1| electron transport complex, RnfABCDGE type, B subunit
           [Pectobacterium carotovorum subsp. carotovorum PC1]
          Length = 192

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 23/73 (31%), Gaps = 10/73 (13%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            A +     E  CI C  C   CP  AI   +             + +    C  C LC 
Sbjct: 105 PARQVAWIDESNCIGCTKCIQACPVDAIIGSTK----------AVHTVVSDLCTGCDLCV 154

Query: 111 EACPVDAIVEGPN 123
             CP D I   P 
Sbjct: 155 APCPTDCIELRPI 167


>gi|167045002|gb|ABZ09666.1| putative 4Fe-4S binding domain protein [uncultured marine
           crenarchaeote HF4000_APKG8G15]
          Length = 103

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 1/68 (1%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C LC  IC      +        G +R   +     +CI  G C   CP  AI  
Sbjct: 12  QMCIGCALCVEICTTLGPDVLRVKPVE-GWKRGKAFVFYPERCISDGACIGVCPTKAIFW 70

Query: 121 GPNFEFAT 128
               +F  
Sbjct: 71  MRPMDFTV 78


>gi|281358700|ref|ZP_06245177.1| hydrogenase, Fe-only [Victivallis vadensis ATCC BAA-548]
 gi|281314826|gb|EFA98862.1| hydrogenase, Fe-only [Victivallis vadensis ATCC BAA-548]
          Length = 676

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 9/86 (10%)

Query: 59  GEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
              +C+ C  C  +C       A+   S              D+   +C+ CG C + CP
Sbjct: 145 DPNKCVLCGDCVRVCSEVQSVGALDFASRGSNARVVPAFDN-DLSEGECVNCGQCAQVCP 203

Query: 115 VDAIVEGPNFEFATETRQELYYDKER 140
             AIV   + +   E      YD E+
Sbjct: 204 TGAIVAKSDADKVWEA----IYDPEK 225


>gi|153815271|ref|ZP_01967939.1| hypothetical protein RUMTOR_01505 [Ruminococcus torques ATCC 27756]
 gi|145847333|gb|EDK24251.1| hypothetical protein RUMTOR_01505 [Ruminococcus torques ATCC 27756]
          Length = 803

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 6/60 (10%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            + +++C  C  C   CP Q IT+ +           +   ID   CI+C  CQ+ CPV 
Sbjct: 415 YDSKDKCCGCSACAMACPKQCITMVADKEG------FLYPQIDQELCIHCNKCQQVCPVR 468



 Score = 33.9 bits (76), Expect = 7.7,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 10/25 (40%)

Query: 101 IKCIYCGLCQEACPVDAIVEGPNFE 125
            KC  C  C  ACP   I    + E
Sbjct: 419 DKCCGCSACAMACPKQCITMVADKE 443


>gi|134094045|ref|YP_001099120.1| putative electron transport complex protein: ferredoxin subunit
           (RfnB) [Herminiimonas arsenicoxydans]
 gi|133737948|emb|CAL60993.1| Putative electron transport complex, ferredoxin subunit
           [Herminiimonas arsenicoxydans]
          Length = 239

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 22/62 (35%), Gaps = 10/62 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C LC   CP  AI   +             + I    C  C LC   CPVD I
Sbjct: 94  DESLCIGCTLCIQACPVDAIVGAAKQ----------MHTIVTDLCTGCDLCVAPCPVDCI 143

Query: 119 VE 120
             
Sbjct: 144 AM 145



 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/28 (53%), Positives = 16/28 (57%)

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           R      ID   CI C LC +ACPVDAI
Sbjct: 86  RPRPVAVIDESLCIGCTLCIQACPVDAI 113


>gi|150399419|ref|YP_001323186.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus vannielii SB]
 gi|150012122|gb|ABR54574.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           vannielii SB]
          Length = 132

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 10/62 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              +  CI C  C   CP  A++++S  +            +D  +CI C  C + CPV+
Sbjct: 76  QKDDNLCIDCGSCVVHCPVGALSVDSDYKIL----------LDEDECIGCKNCAKVCPVN 125

Query: 117 AI 118
           AI
Sbjct: 126 AI 127


>gi|15920342|ref|NP_376011.1| ferredoxin [Sulfolobus tokodaii str. 7]
 gi|17380448|sp|P55907|FER1_SULTO RecName: Full=Zinc-containing ferredoxin-1
 gi|15621124|dbj|BAB65120.1| 104aa long ferredoxin [Sulfolobus tokodaii str. 7]
          Length = 104

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 25/84 (29%), Gaps = 2/84 (2%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
             G   P               + CIA   C   CP         P      ++     +
Sbjct: 22  VYGPVEPPKVLGIHGTIVGVDFDLCIADGSCINACPVNVFQWYDTPGHPASEKKADP--V 79

Query: 99  DMIKCIYCGLCQEACPVDAIVEGP 122
           +   CI+C  C   CPV AI   P
Sbjct: 80  NEQACIFCMACVNVCPVAAIDVKP 103


>gi|226947085|ref|YP_002802158.1| RnfABCDGE type electron transport complex subunit C [Azotobacter
           vinelandii DJ]
 gi|17865302|gb|AAL47174.1|AF450501_4 RnfC [Azotobacter vinelandii]
 gi|226722012|gb|ACO81183.1| Electron transport complex, RnfABCDGE type, C subunit [Azotobacter
           vinelandii DJ]
          Length = 496

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 24/75 (32%), Gaps = 2/75 (2%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI C  C   CP   +T                 +  +  CI CG C   CP   I
Sbjct: 366 DPAPCIRCASCVDACPMG-LTPLDMALYARADDYDGASEYGLRDCILCGCCSYVCPSH-I 423

Query: 119 VEGPNFEFATETRQE 133
                F++A   + E
Sbjct: 424 PLVHYFQYAKGQQDE 438



 Score = 35.1 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 4/42 (9%)

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
           R    + D   CI C  C +ACP   +   P  + A   R +
Sbjct: 359 RHELPNKDPAPCIRCASCVDACP---MGLTP-LDMALYARAD 396


>gi|310828304|ref|YP_003960661.1| hypothetical protein ELI_2717 [Eubacterium limosum KIST612]
 gi|308740038|gb|ADO37698.1| hypothetical protein ELI_2717 [Eubacterium limosum KIST612]
          Length = 375

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 13/65 (20%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ++C  CK+C+ IC   AI+               +  ID  KC+ CG C   CP DAI  
Sbjct: 195 KKCRDCKVCKDICAMNAIS------------YPEKAVIDHDKCVGCGRCIGICPFDAIA- 241

Query: 121 GPNFE 125
            PN E
Sbjct: 242 TPNDE 246


>gi|294496330|ref|YP_003542823.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanohalophilus mahii DSM 5219]
 gi|292667329|gb|ADE37178.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanohalophilus mahii DSM 5219]
          Length = 541

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 9/69 (13%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY--CGLCQEACP 114
                 CI C+ CE  CP  AI         +  ++ V YD    KC+   C  C   CP
Sbjct: 475 EEEAPDCILCRKCEKECPEDAI-----IALEENGKKYVHYD--SEKCLGTSCHRCIAICP 527

Query: 115 VDAIVEGPN 123
           VDAI     
Sbjct: 528 VDAIHYIDI 536


>gi|296137375|ref|YP_003644617.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thiomonas
           intermedia K12]
 gi|295797497|gb|ADG32287.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thiomonas
           intermedia K12]
          Length = 736

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 24/80 (30%), Gaps = 9/80 (11%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     L        RC  C  C   CPA A+             +          
Sbjct: 587 IPLPHGAGSPLGAIRVDASRCTLCLSCVGACPAGALADNPQTPQLRFIEKN--------- 637

Query: 103 CIYCGLCQEACPVDAIVEGP 122
           C+ CGLC + CP DAI   P
Sbjct: 638 CVQCGLCVKTCPEDAIRLEP 657



 Score = 41.6 bits (96), Expect = 0.036,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 16/69 (23%)

Query: 66  CKLCEAICPAQAITIESGPRCHD----------------GTRRTVRYDIDMIKCIYCGLC 109
           C  C  IC AQA+   +  R                         + +ID   C+ CG C
Sbjct: 328 CHACIDICSAQAVHSRARLRPDQTPPIAEADSILPTAAQKKPFVEQIEIDPHLCVGCGAC 387

Query: 110 QEACPVDAI 118
              CP  A+
Sbjct: 388 TTVCPTGAL 396


>gi|212696414|ref|ZP_03304542.1| hypothetical protein ANHYDRO_00952 [Anaerococcus hydrogenalis DSM
           7454]
 gi|256545289|ref|ZP_05472653.1| conserved domain protein [Anaerococcus vaginalis ATCC 51170]
 gi|325849213|ref|ZP_08170664.1| ferredoxin [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|212676586|gb|EEB36193.1| hypothetical protein ANHYDRO_00952 [Anaerococcus hydrogenalis DSM
           7454]
 gi|256398970|gb|EEU12583.1| conserved domain protein [Anaerococcus vaginalis ATCC 51170]
 gi|325480213|gb|EGC83280.1| ferredoxin [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 58

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 28/65 (43%), Gaps = 11/65 (16%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
             Y   E  CI+C  CE  CP QAI                 Y+ID   CI CG C   C
Sbjct: 1   MAYRIDENTCISCGSCEGECPVQAIEQGDAA-----------YEIDEDACIDCGSCAAVC 49

Query: 114 PVDAI 118
           PV+AI
Sbjct: 50  PVEAI 54



 Score = 34.3 bits (77), Expect = 5.5,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 16/27 (59%)

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGP 122
           Y ID   CI CG C+  CPV AI +G 
Sbjct: 3   YRIDENTCISCGSCEGECPVQAIEQGD 29


>gi|218961804|ref|YP_001741579.1| electron transport complex protein rnfB, polyferredoxin subunit
           (rnfB module) [Candidatus Cloacamonas acidaminovorans]
 gi|167730461|emb|CAO81373.1| electron transport complex protein rnfB, polyferredoxin subunit
           (rnfB module) [Candidatus Cloacamonas acidaminovorans]
          Length = 287

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 11/65 (16%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           ++    ++ CI C LC   CPA+AIT+E+               ID  KC  CG C   C
Sbjct: 223 KQNCGADKPCIGCSLCAKKCPAEAITVENNIA-----------RIDYGKCTDCGTCATVC 271

Query: 114 PVDAI 118
           P  AI
Sbjct: 272 PTKAI 276



 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 10/65 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C+    C A C   AI+I++               ID  KC  CG C  ACP   I
Sbjct: 151 CSYGCVGFNDCIAACKFDAISIDNEGMRV----------IDREKCTGCGACVTACPRKLI 200

Query: 119 VEGPN 123
           +  P 
Sbjct: 201 MLVPE 205



 Score = 35.1 bits (79), Expect = 3.0,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 7/76 (9%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK-------CIYCG 107
                 E+C  C  C   CP + I +         +  +   +    +       CI C 
Sbjct: 177 MRVIDREKCTGCGACVTACPRKLIMLVPESMNVFISCSSKDKNPLPKQNCGADKPCIGCS 236

Query: 108 LCQEACPVDAIVEGPN 123
           LC + CP +AI    N
Sbjct: 237 LCAKKCPAEAITVENN 252


>gi|187250942|ref|YP_001875424.1| FeFe Hydrogenase HydB [Elusimicrobium minutum Pei191]
 gi|186971102|gb|ACC98087.1| FeFe Hydrogenase HydB (NuoF) [Elusimicrobium minutum Pei191]
          Length = 620

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 10/66 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L RY   EE+C+ C  C+  CP  AIT E   +            +   KCI CG C  A
Sbjct: 562 LVRYSVIEEKCVGCTACKRACPVGAITGEVKQKHF----------VHQEKCIKCGQCFSA 611

Query: 113 CPVDAI 118
           C   AI
Sbjct: 612 CKFSAI 617



 Score = 38.2 bits (87), Expect = 0.39,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 5/62 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           PN    C+     E     +     +G          VRY +   KC+ C  C+ ACPV 
Sbjct: 531 PNPVLSCLKSFGHEFDEHVKEKHCPTGKCSSL-----VRYSVIEEKCVGCTACKRACPVG 585

Query: 117 AI 118
           AI
Sbjct: 586 AI 587


>gi|218780736|ref|YP_002432054.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218762120|gb|ACL04586.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 266

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 26/83 (31%), Gaps = 12/83 (14%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
              G+   +         +    E C  C +CE +CP  AI  E+               
Sbjct: 170 EVPGNHPYKEMVGGISADFIEVSEACTQCGICEDLCPTNAIDYENDVMVDV--------- 220

Query: 98  IDMIKCIYCGLCQEACPVDAIVE 120
                CI C  C + CP +A   
Sbjct: 221 ---DSCIRCCACIKGCPENARSM 240



 Score = 35.1 bits (79), Expect = 3.1,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 17/42 (40%)

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           + P        +  +      C  CG+C++ CP +AI    +
Sbjct: 174 NHPYKEMVGGISADFIEVSEACTQCGICEDLCPTNAIDYEND 215


>gi|197116467|ref|YP_002136894.1| iron-sulfur cluster-binding domain-containing hydrogenase subunit
           [Geobacter bemidjiensis Bem]
 gi|197085827|gb|ACH37098.1| hydrogenase subunit, iron-sulfur cluster-binding domain-containing
           protein [Geobacter bemidjiensis Bem]
          Length = 332

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 39/113 (34%), Gaps = 27/113 (23%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC---------- 86
           P ++ +     RG  +        + C+ C++C  +C A AI  +               
Sbjct: 158 PADEPAQQFPIRGRMSF-----DPKACVDCRMCRHVCAAGAIHFDIKGDKGDRHLRSQSP 212

Query: 87  ------------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
                         G+   VR  +    C++CGLC   CP  A+    ++  A
Sbjct: 213 SGNKEDRHLRSLSPGSPEGVRLTLWHNSCVFCGLCSHYCPTGALSVTGDWHLA 265


>gi|20093521|ref|NP_613368.1| pyruvate:ferredoxin oxidoreductase, delta subunit [Methanopyrus
           kandleri AV19]
 gi|19886359|gb|AAM01298.1| Pyruvate:ferredoxin oxidoreductase, delta subunit [Methanopyrus
           kandleri AV19]
          Length = 89

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 33/82 (40%), Gaps = 11/82 (13%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E GST     G   + R    +E+C+ C LC   CP   I                 Y I
Sbjct: 14  EPGSTKRNKTGRWRVFRPVLDQEKCMNCGLCFMYCPDGCIRPSDDG-----------YVI 62

Query: 99  DMIKCIYCGLCQEACPVDAIVE 120
           D   C  CG+C+  CPV+AI  
Sbjct: 63  DYDYCKGCGICESVCPVNAIEM 84


>gi|330014991|ref|ZP_08308024.1| pyruvate synthase [Klebsiella sp. MS 92-3]
 gi|328532424|gb|EGF59224.1| pyruvate synthase [Klebsiella sp. MS 92-3]
          Length = 1175

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/142 (16%), Positives = 31/142 (21%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       E  C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEALCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +                          +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVAPEEMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMYRLEHVEEEK 781


>gi|325970945|ref|YP_004247136.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Spirochaeta sp. Buddy]
 gi|324026183|gb|ADY12942.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Spirochaeta sp. Buddy]
          Length = 175

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 27/57 (47%), Gaps = 8/57 (14%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           I C  CE  CP  AIT+        G+  T    ID+ KC  CGLC  ACP  AI  
Sbjct: 48  IPCNPCETACPVHAITV--------GSEITNLPVIDIEKCTGCGLCVAACPGLAIYL 96


>gi|294792883|ref|ZP_06758030.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Veillonella sp.
           6_1_27]
 gi|294456782|gb|EFG25145.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Veillonella sp.
           6_1_27]
          Length = 1178

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 29/90 (32%), Gaps = 17/90 (18%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQ------------AITIESGPRCHDGTRRTVRYDI 98
            AL       E CI C  C  +CP              A   E          + +++ I
Sbjct: 682 PALFVPKWLPENCIQCNQCSFVCPHATIRPILATEAEVAAAPEHFDTIPALGAKDLQFRI 741

Query: 99  --DMIKCIYCGLCQEACPVD---AIVEGPN 123
               + C+ CG C + CP     AIV    
Sbjct: 742 AVSPLDCLGCGNCVDICPAPKGKAIVMTSI 771


>gi|294794642|ref|ZP_06759778.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Veillonella sp.
           3_1_44]
 gi|294454972|gb|EFG23345.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Veillonella sp.
           3_1_44]
          Length = 1178

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 29/90 (32%), Gaps = 17/90 (18%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQ------------AITIESGPRCHDGTRRTVRYDI 98
            AL       E CI C  C  +CP              A   E          + +++ I
Sbjct: 682 PALFVPKWLPENCIQCNQCSFVCPHATIRPILATEAEVAAAPEHFDTIPALGAKDLQFRI 741

Query: 99  --DMIKCIYCGLCQEACPVD---AIVEGPN 123
               + C+ CG C + CP     AIV    
Sbjct: 742 AVSPLDCLGCGNCVDICPAPKGKAIVMTSI 771


>gi|294495823|ref|YP_003542316.1| acetyl-CoA decarbonylase/synthase subunit alpha [Methanohalophilus
           mahii DSM 5219]
 gi|292666822|gb|ADE36671.1| acetyl-CoA decarbonylase/synthase alpha subunit [Methanohalophilus
           mahii DSM 5219]
          Length = 801

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 5/75 (6%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            RC+ C  CE  CP      ++     +G  R   ++I   KC+ CG C++ACP D I  
Sbjct: 410 SRCVHCLACELECPTNLPISDAMNAAEEGDLRP--FEILHDKCVACGRCEQACPKD-IPV 466

Query: 121 GPNFEFATET--RQE 133
               E A++   R+E
Sbjct: 467 LNVIEKASQRVIREE 481


>gi|317133524|ref|YP_004092838.1| hydrogenase, Fe-only [Ethanoligenens harbinense YUAN-3]
 gi|315471503|gb|ADU28107.1| hydrogenase, Fe-only [Ethanoligenens harbinense YUAN-3]
          Length = 562

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 34/105 (32%), Gaps = 10/105 (9%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC-PAQAITI 80
           L LR+  +    + +  E             LR      ++CI C  C  +C   Q +  
Sbjct: 112 LALRFGVRK---VRFRQEVRDLPLDTSSPAILR----DPQKCILCGDCVRMCAEVQGVGA 164

Query: 81  ESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPVDAIVEGPN 123
            +          T  +   +    C+ CG C   CP  AI    +
Sbjct: 165 LAFAYRGSDMEVTTAFHRSLGDVGCVGCGQCAGVCPTGAITVRDD 209


>gi|284162671|ref|YP_003401294.1| Coenzyme F420 hydrogenase [Archaeoglobus profundus DSM 5631]
 gi|284012668|gb|ADB58621.1| Coenzyme F420 hydrogenase [Archaeoglobus profundus DSM 5631]
          Length = 405

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 7/87 (8%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
             +    + C+ C++C   CP+ A++              +   ++   C  CG C + C
Sbjct: 1   MAHHVNSDNCVGCRMCVDACPSGALS-------SKFNGSILTIILNSELCTGCGSCVDIC 53

Query: 114 PVDAIVEGPNFEFATETRQELYYDKER 140
           P +A+   P  E      +      E+
Sbjct: 54  PFNALELVPREEVKEFKIEIDILRPEK 80


>gi|282849962|ref|ZP_06259345.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Veillonella
           parvula ATCC 17745]
 gi|282580399|gb|EFB85799.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Veillonella
           parvula ATCC 17745]
          Length = 1178

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 29/90 (32%), Gaps = 17/90 (18%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQ------------AITIESGPRCHDGTRRTVRYDI 98
            AL       E CI C  C  +CP              A   E          + +++ I
Sbjct: 682 PALFVPKWLPENCIQCNQCSFVCPHATIRPILATEAEVAAAPEHFDTIPALGAKDLQFRI 741

Query: 99  --DMIKCIYCGLCQEACPVD---AIVEGPN 123
               + C+ CG C + CP     AIV    
Sbjct: 742 AVSPLDCLGCGNCVDICPAPKGKAIVMTSI 771


>gi|294879468|ref|XP_002768697.1| pyruvate:ferredoxin oxidoreductase, putative [Perkinsus marinus
           ATCC 50983]
 gi|239871437|gb|EER01415.1| pyruvate:ferredoxin oxidoreductase, putative [Perkinsus marinus
           ATCC 50983]
          Length = 892

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 38/120 (31%), Gaps = 30/120 (25%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAI---------------TIESGPRCHDGTRRTVR 95
            AL       ++C  C +C   CP   I               T +S           + 
Sbjct: 739 VALMIPIVDMDKCTQCNICSMSCPHACIRPFLLSQAEDDAKPSTFDSRKAKGGAEVAGLH 798

Query: 96  YDID--MIKCIYCGLCQEACPVDAIVE----------GPNFEFATE--TRQELYYDKERL 141
           Y I    + C  C  C  ACP DA+             PN+E+A     R    +DK  L
Sbjct: 799 YRIQVSPLDCTGCETCVNACPYDALRMEHLADFEDIEKPNWEYAVSLPDRSSR-FDKTTL 857


>gi|239628144|ref|ZP_04671175.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239518290|gb|EEQ58156.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 693

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 26/75 (34%), Gaps = 12/75 (16%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            +C  C  C   C  +AI             +  R  I   +CI CG C + CP  A   
Sbjct: 9   TKCKHCYKCVRYCDVKAI-----------QVKDERAVIMPDRCILCGHCLKICPQSAKTL 57

Query: 121 GPNFEFA-TETRQEL 134
             + +      R+ +
Sbjct: 58  RSDLDMVKGFLREGM 72


>gi|238018724|ref|ZP_04599150.1| hypothetical protein VEIDISOL_00568 [Veillonella dispar ATCC 17748]
 gi|237865195|gb|EEP66485.1| hypothetical protein VEIDISOL_00568 [Veillonella dispar ATCC 17748]
          Length = 1178

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 29/90 (32%), Gaps = 17/90 (18%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQ------------AITIESGPRCHDGTRRTVRYDI 98
            AL       E CI C  C  +CP              A   E          + +++ I
Sbjct: 682 PALFVPKWLPENCIQCNQCSFVCPHATIRPILATEAEVAAAPEHFDTIPALGAKDLQFRI 741

Query: 99  --DMIKCIYCGLCQEACPVD---AIVEGPN 123
               + C+ CG C + CP     AIV    
Sbjct: 742 AVSPLDCLGCGNCVDICPAPKGKAIVMTSI 771


>gi|269798448|ref|YP_003312348.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Veillonella parvula
           DSM 2008]
 gi|269095077|gb|ACZ25068.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Veillonella parvula
           DSM 2008]
          Length = 1178

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 29/90 (32%), Gaps = 17/90 (18%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQ------------AITIESGPRCHDGTRRTVRYDI 98
            AL       E CI C  C  +CP              A   E          + +++ I
Sbjct: 682 PALFVPKWLPENCIQCNQCSFVCPHATIRPILATEAEVAAAPEHFDTIPALGAKDLQFRI 741

Query: 99  --DMIKCIYCGLCQEACPVD---AIVEGPN 123
               + C+ CG C + CP     AIV    
Sbjct: 742 AVSPLDCLGCGNCVDICPAPKGKAIVMTSI 771


>gi|194337337|ref|YP_002019131.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194309814|gb|ACF44514.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 578

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 6/59 (10%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           C  CK C + CP +A+T                   +  KC+ C +C   CP   I  G
Sbjct: 521 CFDCKQCLSFCPQEAVTRFRD------NPVGEVVYTNYSKCVGCHICALVCPSGYIQMG 573


>gi|195130537|ref|XP_002009708.1| GI15089 [Drosophila mojavensis]
 gi|193908158|gb|EDW07025.1| GI15089 [Drosophila mojavensis]
          Length = 1035

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 23/83 (27%), Gaps = 10/83 (12%)

Query: 59   GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP-VDA 117
             ++ CI C  C   C                  +          C  C LC   CP +D 
Sbjct: 951  NDDMCINCGKCYMTCA-------DSGYQAIEFDKDTHLPHVNDDCTGCTLCVSVCPIIDC 1003

Query: 118  IVEGPNFEFATETRQELYYDKER 140
            I   P        R     DK++
Sbjct: 1004 ISMVPKKIPHVIKRG--IEDKDK 1024


>gi|126656037|ref|ZP_01727421.1| NAD-reducing hydrogenase subunit U [Cyanothece sp. CCY0110]
 gi|126622317|gb|EAZ93023.1| NAD-reducing hydrogenase subunit U [Cyanothece sp. CCY0110]
          Length = 238

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 4/69 (5%)

Query: 55  RYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLCQ 110
           ++     RCI C  C  +C     A   +   R       +        +  C  CG C 
Sbjct: 140 QFGMDHNRCILCTRCVRVCDEIEGAHVWDVASRGGQSFIVSGINQPWGNVDACTSCGKCV 199

Query: 111 EACPVDAIV 119
           +ACP  AI 
Sbjct: 200 DACPTGAIF 208


>gi|326623243|gb|EGE29588.1| putative pyruvate-flavodoxin oxidoreductase [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
          Length = 1174

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 699

Query: 74  PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           P  A                   +++   R   G +      +    C  C LC E CP 
Sbjct: 700 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757

Query: 116 --------DAIVEGPNFEFATETR 131
                    AI      E   E +
Sbjct: 758 KDRQNPQIKAINMMSRLEHVEEEK 781


>gi|323259117|gb|EGA42763.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
          Length = 1006

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 478 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 531

Query: 74  PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           P  A                   +++   R   G +      +    C  C LC E CP 
Sbjct: 532 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 589

Query: 116 --------DAIVEGPNFEFATETR 131
                    AI      E   E +
Sbjct: 590 KDRQNPQIKAINMMSRLEHVEEEK 613


>gi|323204140|gb|EFZ89153.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
          Length = 1039

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 511 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 564

Query: 74  PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           P  A                   +++   R   G +      +    C  C LC E CP 
Sbjct: 565 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 622

Query: 116 --------DAIVEGPNFEFATETR 131
                    AI      E   E +
Sbjct: 623 KDRQNPQIKAINMMSRLEHVEEEK 646


>gi|322614901|gb|EFY11826.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322619341|gb|EFY16221.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322623153|gb|EFY19995.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322628443|gb|EFY25231.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322634850|gb|EFY31581.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322638585|gb|EFY35280.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322641026|gb|EFY37673.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
 gi|322645391|gb|EFY41919.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322651724|gb|EFY48096.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322654376|gb|EFY50698.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322661216|gb|EFY57442.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322662655|gb|EFY58862.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322667734|gb|EFY63894.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322671854|gb|EFY67975.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322677101|gb|EFY73165.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322680237|gb|EFY76276.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322685334|gb|EFY81330.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|323194303|gb|EFZ79499.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323199393|gb|EFZ84487.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323205853|gb|EFZ90816.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323213895|gb|EFZ98666.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323217181|gb|EGA01902.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323220071|gb|EGA04539.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323227259|gb|EGA11429.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323232042|gb|EGA16149.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323234569|gb|EGA18656.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323238022|gb|EGA22081.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323243377|gb|EGA27396.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323246183|gb|EGA30168.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323253685|gb|EGA37512.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323260415|gb|EGA44028.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323266498|gb|EGA49985.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323271222|gb|EGA54649.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
          Length = 1174

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 699

Query: 74  PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           P  A                   +++   R   G +      +    C  C LC E CP 
Sbjct: 700 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757

Query: 116 --------DAIVEGPNFEFATETR 131
                    AI      E   E +
Sbjct: 758 KDRQNPQIKAINMMSRLEHVEEEK 781


>gi|321224274|gb|EFX49337.1| Pyruvate-flavodoxin oxidoreductase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
          Length = 1180

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 699

Query: 74  PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           P  A                   +++   R   G +      +    C  C LC E CP 
Sbjct: 700 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757

Query: 116 --------DAIVEGPNFEFATETR 131
                    AI      E   E +
Sbjct: 758 KDRQDPQIKAINMMSRLEHVEEEK 781


>gi|303245454|ref|ZP_07331738.1| nitroreductase [Desulfovibrio fructosovorans JJ]
 gi|302493303|gb|EFL53165.1| nitroreductase [Desulfovibrio fructosovorans JJ]
          Length = 273

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/76 (28%), Positives = 27/76 (35%), Gaps = 8/76 (10%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E C  C LC A CPA  +      +                 CI CG C  +CP  A   
Sbjct: 8   EECSGCGLCVAACPASLVRQSEEGQPPHALAGR------EEHCIRCGHCVISCPTGAFHH 61

Query: 121 G--PNFEFATETRQEL 134
              P   F+   R+EL
Sbjct: 62  ALLPEERFSPLKRREL 77


>gi|304312861|ref|YP_003812459.1| hypothetical protein HDN1F_32410 [gamma proteobacterium HdN1]
 gi|301798594|emb|CBL46824.1| Hypothetical protein HDN1F_32410 [gamma proteobacterium HdN1]
          Length = 296

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 10/66 (15%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C   CP  AI   +           + + +   +C  C LC E CPVD I  
Sbjct: 91  DECIGCTKCIQACPVDAILGAA----------QLMHTVIGDQCTGCNLCVEPCPVDCIDM 140

Query: 121 GPNFEF 126
               E 
Sbjct: 141 VAMPEL 146



 Score = 37.0 bits (84), Expect = 0.80,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           I   +CI C  C +ACPVDAI
Sbjct: 88  IREDECIGCTKCIQACPVDAI 108


>gi|295706514|ref|YP_003599589.1| dihydroorotate dehydrogenase [Bacillus megaterium DSM 319]
 gi|294804173|gb|ADF41239.1| dihydroorotate dehydrogenase [Bacillus megaterium DSM 319]
          Length = 426

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 20/63 (31%), Gaps = 4/63 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117
             + CI C  C   C   +       +   G             C+ C LC   CPVD A
Sbjct: 338 DPDTCINCNKCHISCEDTSHQCIDMLKDPSGKSYLKV---REEDCVGCNLCSIVCPVDGA 394

Query: 118 IVE 120
           I  
Sbjct: 395 ISM 397


>gi|294788766|ref|ZP_06754007.1| electron transport complex, RnfABCDGE type, B subunit [Simonsiella
           muelleri ATCC 29453]
 gi|294483248|gb|EFG30934.1| electron transport complex, RnfABCDGE type, B subunit [Simonsiella
           muelleri ATCC 29453]
          Length = 287

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 23/66 (34%), Gaps = 10/66 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C  C   CP  AI   S             + +   +C  CGLC   CPVD
Sbjct: 83  YIDESVCIGCTACIRACPVDAIMGASK----------FMHTVLTDECTGCGLCVAPCPVD 132

Query: 117 AIVEGP 122
            I    
Sbjct: 133 CIDLID 138


>gi|291549367|emb|CBL25629.1| hydrogenases, Fe-only [Ruminococcus torques L2-14]
          Length = 564

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 25/83 (30%), Gaps = 13/83 (15%)

Query: 59  GEERCIACKLCEAICP--------AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
              +CI C  C  +C           A             ++     I    C+ CG C+
Sbjct: 141 DPNKCILCGDCVRMCDNVQNINAIDFAYRGTDAQVIPAFNKK-----IAETDCVGCGQCR 195

Query: 111 EACPVDAIVEGPNFEFATETRQE 133
             CP  AI    N +   E   +
Sbjct: 196 VVCPTGAISIHTNIDEVWEALAD 218


>gi|260655145|ref|ZP_05860633.1| periplasmic [Fe] hydrogenase, large subunit [Jonquetella anthropi
           E3_33 E1]
 gi|260630067|gb|EEX48261.1| periplasmic [Fe] hydrogenase, large subunit [Jonquetella anthropi
           E3_33 E1]
          Length = 577

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 6/91 (6%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT---RR 92
            PF+K         +  L R  +   +CI C  C  +C     +         GT     
Sbjct: 121 TPFKKHIDDRTSNPDFPLIRDYS---KCIKCMRCVQVCDKIQHSNVWDVVNSGGTITVDV 177

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
              Y ++   C+ CG C   CPV A+ E  +
Sbjct: 178 GKAYRLEDAPCVLCGQCITHCPVGALHERDD 208


>gi|238911964|ref|ZP_04655801.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
          Length = 1204

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 699

Query: 74  PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           P  A                   +++   R   G +      +    C  C LC E CP 
Sbjct: 700 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757

Query: 116 --------DAIVEGPNFEFATETR 131
                    AI      E   E +
Sbjct: 758 KDRQNPQIKAINMMSRLEHVEEEK 781


>gi|226948233|ref|YP_002803324.1| anaerobic sulfite reductase, subunit C [Clostridium botulinum A2
           str. Kyoto]
 gi|226842865|gb|ACO85531.1| anaerobic sulfite reductase, subunit C [Clostridium botulinum A2
           str. Kyoto]
          Length = 321

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 22/88 (25%), Gaps = 8/88 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +         G   +      + RCI C  C   C                     +
Sbjct: 145 CPNDCIKARMHDFGILGMTEPQYDKYRCIGCMACINNC--------KKRVTGALRFENFK 196

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPN 123
              D  KCI CG C   CP  A      
Sbjct: 197 VIRDHEKCIGCGECVGKCPTGAWTRSKE 224


>gi|224583858|ref|YP_002637656.1| pyruvate-flavodoxin oxidoreductase [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|224468385|gb|ACN46215.1| putative pyruvate-flavodoxin oxidoreductase [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
          Length = 1174

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 699

Query: 74  PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           P  A                   +++   R   G +      +    C  C LC E CP 
Sbjct: 700 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757

Query: 116 --------DAIVEGPNFEFATETR 131
                    AI      E   E +
Sbjct: 758 KDRQNPQIKAINMMSRLEHVEEEK 781


>gi|223984272|ref|ZP_03634417.1| hypothetical protein HOLDEFILI_01711 [Holdemania filiformis DSM
           12042]
 gi|223963757|gb|EEF68124.1| hypothetical protein HOLDEFILI_01711 [Holdemania filiformis DSM
           12042]
          Length = 1168

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 30/103 (29%), Gaps = 20/103 (19%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHD 88
            S + +   A++        CI C  C  +CP                A       +   
Sbjct: 669 VSFKEKRTIAVQVPTWDPNNCIQCGFCSFVCPHATIRPFLLTDEEIANAPMEFKTIQAMG 728

Query: 89  GTRRTVRYDID--MIKCIYCGLCQEACPV----DAIVEGPNFE 125
                ++Y I      C+ CGLC   CP      A+      E
Sbjct: 729 KGVENLKYRIQVSPANCVGCGLCVVECPGKGGNKALKMVDINE 771


>gi|224370960|ref|YP_002605124.1| HyfI [Desulfobacterium autotrophicum HRM2]
 gi|223693677|gb|ACN16960.1| HyfI [Desulfobacterium autotrophicum HRM2]
          Length = 258

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/121 (20%), Positives = 40/121 (33%), Gaps = 11/121 (9%)

Query: 20  FFLCLRYFFKAKT-TINYPFEK-GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA 77
            F  +R  F+ K  T+++P         R+ G   +            C  C   CP  A
Sbjct: 1   MFDIIRTRFQQKYRTLSWPRGPAPELPHRYAGRPIMDGDCLEN-----CTACIDACPTGA 55

Query: 78  ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
           I++ +               +D+ KC++C  C+  C    I        A   R  L   
Sbjct: 56  ISLSNNQNPALP----AELSMDLGKCLFCRKCETVCTHGVITFSRQSRMAATQRDALIIK 111

Query: 138 K 138
           K
Sbjct: 112 K 112


>gi|213584020|ref|ZP_03365846.1| pyruvate-flavodoxin oxidoreductase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 654

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 314 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 367

Query: 74  PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           P  A                   +++   R   G +      +    C  C LC E CP 
Sbjct: 368 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 425

Query: 116 --------DAIVEGPNFEFATETR 131
                    AI      E   E +
Sbjct: 426 KDRQNPQIKAINMMSRLEHVEEEK 449


>gi|200389668|ref|ZP_03216279.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
 gi|199602113|gb|EDZ00659.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Virchow str. SL491]
          Length = 1174

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 699

Query: 74  PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           P  A                   +++   R   G +      +    C  C LC E CP 
Sbjct: 700 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757

Query: 116 --------DAIVEGPNFEFATETR 131
                    AI      E   E +
Sbjct: 758 KDRQNPQIKAINMMSRLEHVEEEK 781


>gi|189485526|ref|YP_001956467.1| NAD-dependent Fe-hydrogenase 51kDa NADH dehydrogenase component
           [uncultured Termite group 1 bacterium phylotype Rs-D17]
 gi|170287485|dbj|BAG14006.1| NAD-dependent Fe-hydrogenase 51kDa NADH dehydrogenase component
           [uncultured Termite group 1 bacterium phylotype Rs-D17]
          Length = 623

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 16/96 (16%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            L+Y F+ +   +   ++           +L  Y    ++CI C +C   CPA+AI+ E 
Sbjct: 541 TLKY-FRNEYDAHVKEKRCPAGEC----KSLINYEI-TDKCIGCTVCAVKCPAKAISGE- 593

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                    R  ++ I ++KC+ C +C ++C  +AI
Sbjct: 594 ---------RRQKHKIAIVKCVKCDICIKSCKFNAI 620


>gi|188587026|ref|YP_001918571.1| Cobyrinic acid ac-diamide synthase [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179351713|gb|ACB85983.1| Cobyrinic acid ac-diamide synthase [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 652

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 5/64 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C  C  C  +C   AIT +             +Y ID + C  CG C+  C  DAI
Sbjct: 418 DSNECSGCGKCYQVCRFAAITFQEREGEDK-----QKYQIDPLNCEGCGACRLVCQSDAI 472

Query: 119 VEGP 122
              P
Sbjct: 473 KLEP 476



 Score = 42.4 bits (98), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 11/64 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +E+C  C  C  IC   A+   +               +    C  CG C  ACP  AI
Sbjct: 75  DQEKCTGCGECSQICVFNALVSINQEIL-----------LFPELCHACGACNLACPNSAI 123

Query: 119 VEGP 122
            EG 
Sbjct: 124 QEGN 127


>gi|168819450|ref|ZP_02831450.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|205343855|gb|EDZ30619.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           HI_N05-537]
 gi|320085856|emb|CBY95631.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 1174

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 699

Query: 74  PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           P  A                   +++   R   G +      +    C  C LC E CP 
Sbjct: 700 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757

Query: 116 --------DAIVEGPNFEFATETR 131
                    AI      E   E +
Sbjct: 758 KDRQNPQIKAINMMSRLEHVEEEK 781


>gi|168260149|ref|ZP_02682122.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
 gi|205350565|gb|EDZ37196.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Hadar str. RI_05P066]
          Length = 1174

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 699

Query: 74  PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           P  A                   +++   R   G +      +    C  C LC E CP 
Sbjct: 700 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757

Query: 116 --------DAIVEGPNFEFATETR 131
                    AI      E   E +
Sbjct: 758 KDRQDPQIKAINMMSRLEHVEEEK 781


>gi|194445273|ref|YP_002040899.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194403936|gb|ACF64158.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
          Length = 1174

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 699

Query: 74  PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           P  A                   +++   R   G +      +    C  C LC E CP 
Sbjct: 700 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757

Query: 116 --------DAIVEGPNFEFATETR 131
                    AI      E   E +
Sbjct: 758 KDRQNPQIKAINMMSRLEHVEEEK 781


>gi|168241208|ref|ZP_02666140.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
 gi|194451230|ref|YP_002045691.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194409534|gb|ACF69753.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|205339538|gb|EDZ26302.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL486]
          Length = 1174

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 699

Query: 74  PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           P  A                   +++   R   G +      +    C  C LC E CP 
Sbjct: 700 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757

Query: 116 --------DAIVEGPNFEFATETR 131
                    AI      E   E +
Sbjct: 758 KDRQNPQIKAINMMSRLEHVEEEK 781


>gi|204927513|ref|ZP_03218714.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
 gi|204322855|gb|EDZ08051.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Javiana str.
           GA_MM04042433]
          Length = 1174

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 699

Query: 74  PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           P  A                   +++   R   G +      +    C  C LC E CP 
Sbjct: 700 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757

Query: 116 --------DAIVEGPNFEFATETR 131
                    AI      E   E +
Sbjct: 758 KDRQNPQIKAINMMSRLEHVEEEK 781


>gi|197250474|ref|YP_002146381.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197214177|gb|ACH51574.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
          Length = 1174

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 699

Query: 74  PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           P  A                   +++   R   G +      +    C  C LC E CP 
Sbjct: 700 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757

Query: 116 --------DAIVEGPNFEFATETR 131
                    AI      E   E +
Sbjct: 758 KDRQNPQIKAINMMSRLEHVEEEK 781


>gi|168182811|ref|ZP_02617475.1| anaerobic sulfite reductase, subunit C [Clostridium botulinum Bf]
 gi|237794256|ref|YP_002861808.1| anaerobic sulfite reductase subunit C [Clostridium botulinum Ba4
           str. 657]
 gi|182673968|gb|EDT85929.1| anaerobic sulfite reductase, subunit C [Clostridium botulinum Bf]
 gi|229263477|gb|ACQ54510.1| anaerobic sulfite reductase, subunit C [Clostridium botulinum Ba4
           str. 657]
          Length = 321

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 25/88 (28%), Gaps = 8/88 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +         G   +      + RC+ C+ C   C  +A                 +
Sbjct: 145 CPNDCIKARMHDFGILGMTEPQYDKYRCVGCQACVNNCKKRA--------AGALRFENFK 196

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPN 123
              D  KCI CG C   CP  A      
Sbjct: 197 VIRDYEKCIGCGECVGKCPTGAWTRSKE 224


>gi|168235775|ref|ZP_02660833.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
 gi|194735236|ref|YP_002114676.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|194710738|gb|ACF89959.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197290972|gb|EDY30325.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           SL480]
          Length = 1174

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 699

Query: 74  PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           P  A                   +++   R   G +      +    C  C LC E CP 
Sbjct: 700 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757

Query: 116 --------DAIVEGPNFEFATETR 131
                    AI      E   E +
Sbjct: 758 KDRQNPQIKAINMMSRLEHVEEEK 781


>gi|168230073|ref|ZP_02655131.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
 gi|194469550|ref|ZP_03075534.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|194455914|gb|EDX44753.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Kentucky str. CVM29188]
 gi|205335351|gb|EDZ22115.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Kentucky str. CDC 191]
          Length = 1174

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 699

Query: 74  PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           P  A                   +++   R   G +      +    C  C LC E CP 
Sbjct: 700 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757

Query: 116 --------DAIVEGPNFEFATETR 131
                    AI      E   E +
Sbjct: 758 KDRQNPQIKAINMMSRLEHVEEEK 781


>gi|168462895|ref|ZP_02696826.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|198245539|ref|YP_002215497.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|207856852|ref|YP_002243503.1| pyruvate-flavodoxin oxidoreductase [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|195633910|gb|EDX52262.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Newport str. SL317]
 gi|197940055|gb|ACH77388.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|206708655|emb|CAR32980.1| probable pyruvate-flavodoxin oxidoreductase [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
          Length = 1174

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 699

Query: 74  PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           P  A                   +++   R   G +      +    C  C LC E CP 
Sbjct: 700 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757

Query: 116 --------DAIVEGPNFEFATETR 131
                    AI      E   E +
Sbjct: 758 KDRQNPQIKAINMMSRLEHVEEEK 781


>gi|167549865|ref|ZP_02343623.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
 gi|205325013|gb|EDZ12852.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA29]
          Length = 1174

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 699

Query: 74  PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           P  A                   +++   R   G +      +    C  C LC E CP 
Sbjct: 700 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757

Query: 116 --------DAIVEGPNFEFATETR 131
                    AI      E   E +
Sbjct: 758 KDRQNPQIKAINMMSRLEHVEEEK 781


>gi|161613883|ref|YP_001587848.1| hypothetical protein SPAB_01620 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|161363247|gb|ABX67015.1| hypothetical protein SPAB_01620 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 1174

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 699

Query: 74  PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           P  A                   +++   R   G +      +    C  C LC E CP 
Sbjct: 700 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757

Query: 116 --------DAIVEGPNFEFATETR 131
                    AI      E   E +
Sbjct: 758 KDRQNPQIKAINMMSRLEHVEEEK 781


>gi|150391798|ref|YP_001321847.1| hydrogenase, Fe-only [Alkaliphilus metalliredigens QYMF]
 gi|149951660|gb|ABR50188.1| hydrogenase, Fe-only [Alkaliphilus metalliredigens QYMF]
          Length = 551

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 3/78 (3%)

Query: 59  GEERCIACKLCEAIC-PAQAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQEACPV 115
              +CI C  C  +C   Q  +I         T+ +  ++  ++   CIYCG C  +CPV
Sbjct: 144 DSSKCILCGRCVNVCKNVQKTSILEFTNRGFETQISPAFNKSMNETPCIYCGQCIVSCPV 203

Query: 116 DAIVEGPNFEFATETRQE 133
            A+ E  + E   +  ++
Sbjct: 204 AALREKEDIERVWDAIED 221


>gi|149378172|ref|ZP_01895889.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfC
           [Marinobacter algicola DG893]
 gi|149357534|gb|EDM46039.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfC
           [Marinobacter algicola DG893]
          Length = 612

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 12/105 (11%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
             P  E+ CI C +C   CP + +  +       G        +++  CI CG C   CP
Sbjct: 361 PDPAPEQPCIRCSMCAEACPMELLPQQLFWYSKSGE-LDKVEHLNLFDCIECGACSYVCP 419

Query: 115 VDAIVEGPNF-----EFATETRQELYYDKERLLNNGDRWESEIVR 154
             +I     +     E   +  ++L  D+ R     +R+E+   R
Sbjct: 420 -SSIPLVQYYRAAKGEIRVQQAEQLKADRAR-----ERFEARQAR 458


>gi|134045391|ref|YP_001096877.1| formylmethanofuran dehydrogenase subunit F [Methanococcus
           maripaludis C5]
 gi|132663016|gb|ABO34662.1| formylmethanofuran dehydrogenase, subunit F [Methanococcus
           maripaludis C5]
          Length = 352

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 33/71 (46%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R    L      ++ C+ C +C   CPA+AI +                 ID+  C+YC 
Sbjct: 139 RKSLVLGEITIKKDDCVLCGICAEYCPAEAIELIPNDMNALSLNPIADIKIDLDACVYCK 198

Query: 108 LCQEACPVDAI 118
           +C++ACP +AI
Sbjct: 199 VCEKACPHNAI 209



 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 8/95 (8%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPN-------GEERCIACKLCEAICPAQAITIESGPRCHD 88
            PF+    S   +    + +YP         + +C+ C+ CE +CP Q            
Sbjct: 81  CPFDAVKLSINDKPITEMPQYPKIKRGIELNQSKCVLCEQCELVCP-QCAIDVEREVPER 139

Query: 89  GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
            +       I    C+ CG+C E CP +AI   PN
Sbjct: 140 KSLVLGEITIKKDDCVLCGICAEYCPAEAIELIPN 174



 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 35/96 (36%), Gaps = 5/96 (5%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
            E        R     R     +  C+ C +C  ICP  AI +        G     + D
Sbjct: 7   DENDGVIEISRSGVEKRVLKWDDCTCVGCGICSEICPTSAIEMGPLGAIFKGELDAPKLD 66

Query: 98  IDMIKCIYCGLCQEACPVDA----IVEGPNFEFATE 129
           I   KC+ CG+C  ACP DA    I + P  E    
Sbjct: 67  IS-EKCVLCGMCACACPFDAVKLSINDKPITEMPQY 101



 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 34/101 (33%), Gaps = 11/101 (10%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPN---GEERCIACKLCEAICPAQAITIESGPRC------ 86
            P E     P      +L    +     + C+ CK+CE  CP  AI              
Sbjct: 164 CPAEAIELIPNDMNALSLNPIADIKIDLDACVYCKVCEKACPHNAIEAICYKCPLASKIK 223

Query: 87  --HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
                     + +ID   C+ CG C   CP DAI     FE
Sbjct: 224 EPELYKEIKGQTNIDKDLCVSCGWCANICPADAIEVEKPFE 264



 Score = 41.6 bits (96), Expect = 0.032,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 8/83 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +       F GE  +      E  C AC  C ++CP  A+     P+      +   
Sbjct: 252 CPADAIEVEKPFEGELII-----DEPACNACGACISVCPCNALVF---PKPEKQGDKVPN 303

Query: 96  YDIDMIKCIYCGLCQEACPVDAI 118
             ++   CI CG C  +CPVDA+
Sbjct: 304 VMVNQDVCILCGACTHSCPVDAL 326



 Score = 38.9 bits (89), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 8/64 (12%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              ++ C++C  C  ICPA AI +E                ID   C  CG C   CP +
Sbjct: 236 NIDKDLCVSCGWCANICPADAIEVEKPFEGEL--------IIDEPACNACGACISVCPCN 287

Query: 117 AIVE 120
           A+V 
Sbjct: 288 ALVF 291



 Score = 38.9 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY----DIDMIKCIYCGLCQEAC 113
           +  E+C+ C +C   CP  A+ +    +      +  +     +++  KC+ C  C+  C
Sbjct: 66  DISEKCVLCGMCACACPFDAVKLSINDKPITEMPQYPKIKRGIELNQSKCVLCEQCELVC 125

Query: 114 PVDAI 118
           P  AI
Sbjct: 126 PQCAI 130


>gi|146305429|ref|YP_001185894.1| formate dehydrogenase, alpha subunit [Pseudomonas mendocina ymp]
 gi|145573630|gb|ABP83162.1| formate dehydrogenase alpha subunit [Pseudomonas mendocina ymp]
          Length = 944

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 24/81 (29%), Gaps = 3/81 (3%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T      G             D    +C+ CG C  
Sbjct: 157 YFSYDPSKCIVCNRCVRACEEVQGTFALTIDGRGFDSRVAAGQAEDFLDSECVSCGACVN 216

Query: 112 ACPVDAIVEGPNFEFATETRQ 132
           ACP   ++E    E     R 
Sbjct: 217 ACPTATLMEKSVIELGQAERS 237


>gi|147918954|ref|YP_685326.1| tungsten formylmethanofuran dehydrogenase, subunit F [uncultured
           methanogenic archaeon RC-I]
 gi|147920867|ref|YP_687320.1| tungsten formylmethanofuran dehydrogenase, subunit F [uncultured
           methanogenic archaeon RC-I]
 gi|110620722|emb|CAJ36000.1| tungsten formylmethanofuran dehydrogenase, subunit F [uncultured
           methanogenic archaeon RC-I]
 gi|110622716|emb|CAJ37994.1| tungsten formylmethanofuran dehydrogenase, subunit F [uncultured
           methanogenic archaeon RC-I]
          Length = 363

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 30/63 (47%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +RC  C +C   CP +AIT         G  +  + D+D  KC +CG+C   CP +AI
Sbjct: 30  DLDRCTGCGVCIDACPEEAITEGPIGAVSRGKAKVSKVDVDPKKCSFCGVCNILCPFNAI 89

Query: 119 VEG 121
              
Sbjct: 90  KLS 92



 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 2/65 (3%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
             Y   + +C  C +C   C   A  IE         +R      D  KC  C +C E C
Sbjct: 157 IDYKLDDAKCTKCGICAEAC--DAFKIEYKEPTPLTVKRIGEVKFDEKKCDACKVCVEIC 214

Query: 114 PVDAI 118
           P DAI
Sbjct: 215 PEDAI 219



 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 10/93 (10%)

Query: 36  YPFE---KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
            P E   +G      RG+  + +     ++C  C +C  +CP  AI +            
Sbjct: 44  CPEEAITEGPIGAVSRGKAKVSKVDVDPKKCSFCGVCNILCPFNAIKLSVDGVEKLPILE 103

Query: 93  TVRY-------DIDMIKCIYCGLCQEACPVDAI 118
              +        ID  KC  C LC+E CP DAI
Sbjct: 104 QQGFPVLEKKAKIDDEKCSRCVLCEEVCPRDAI 136



 Score = 42.0 bits (97), Expect = 0.030,   Method: Composition-based stats.
 Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 5/107 (4%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP-----RCHDGTRRT 93
           EK     +       ++    +E+C  C LCE +CP  AI  +        +     +  
Sbjct: 97  EKLPILEQQGFPVLEKKAKIDDEKCSRCVLCEEVCPRDAIRRDVAKVDQGHKAASTMKYA 156

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140
           + Y +D  KC  CG+C EAC    I          +   E+ +D+++
Sbjct: 157 IDYKLDDAKCTKCGICAEACDAFKIEYKEPTPLTVKRIGEVKFDEKK 203



 Score = 37.0 bits (84), Expect = 0.86,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 19/26 (73%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPN 123
           +D+ +C  CG+C +ACP +AI EGP 
Sbjct: 29  VDLDRCTGCGVCIDACPEEAITEGPI 54



 Score = 37.0 bits (84), Expect = 0.86,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 7/81 (8%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93
           +  P +       F GE  +            C  C  +CP  A+ +   P   +   + 
Sbjct: 250 VICPKDAAKVEKVFEGELTINTANCPAG----CSTCVDVCPCNALYL---PVVEEAGHKP 302

Query: 94  VRYDIDMIKCIYCGLCQEACP 114
            +   +   CIYCG C  ACP
Sbjct: 303 GKLAYNKDFCIYCGACINACP 323



 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E++C ACK+C  ICP  AI+IE         + + +  ID  +C+ C  CQ  CP DA 
Sbjct: 200 DEKKCDACKVCVEICPEDAISIERKIIEEP--KLSGKVAIDTNECVTCTWCQVICPKDAA 257

Query: 119 VEGPNFE 125
                FE
Sbjct: 258 KVEKVFE 264


>gi|90408374|ref|ZP_01216537.1| electron transport complex protein RnfC [Psychromonas sp. CNPT3]
 gi|90310537|gb|EAS38659.1| electron transport complex protein RnfC [Psychromonas sp. CNPT3]
          Length = 839

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 10/104 (9%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
             E+ CI C  C   CP + +  +      +   + +    ++  CI CG+C   CP   
Sbjct: 380 EQEQACIRCSYCADACPVELMPQQLLWYAKNQDHKKLE-AYNLSSCIECGICAFVCP-ST 437

Query: 118 IVEGPNFEFATETRQELYYDKERLLNNGD----RWESEIVRNIV 157
           I     +  A        +  ++     D    R E    R I 
Sbjct: 438 IPLVDYYRIAKAE----IHTAKKESQQADIARQRHEKREARLIQ 477


>gi|4034791|emb|CAA76373.1| hydrogenase [Nyctotherus ovalis]
          Length = 1206

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 1/65 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++CI C +C   C  Q +          G        +D+ +CI CG C   CP  AI
Sbjct: 167 DNDKCINCDICVHTCSLQGLNALGFYNEE-GHAVKSMGTLDVSECIQCGQCINRCPTGAI 225

Query: 119 VEGPN 123
            E   
Sbjct: 226 TEKSE 230


>gi|77919187|ref|YP_357002.1| MinD family ATPase [Pelobacter carbinolicus DSM 2380]
 gi|77545270|gb|ABA88832.1| MinD superfamily P-loop ATPase [Pelobacter carbinolicus DSM 2380]
          Length = 291

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 6/60 (10%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E+C  C  C   C   A+   +             + ID + C  CG+C   CP  AI  
Sbjct: 66  EKCNGCGACLVHCRFCAVKKSAEQTGKP------IFSIDPVACEGCGVCVYVCPEQAIDF 119


>gi|71907125|ref|YP_284712.1| electron transport complex, RnfABCDGE type, B subunit
           [Dechloromonas aromatica RCB]
 gi|71846746|gb|AAZ46242.1| Electron transport complex, RnfABCDGE type, B subunit
           [Dechloromonas aromatica RCB]
          Length = 177

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 10/61 (16%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C  C  +CP  AI          G  + +   I    C  C  C + CP +A+   P
Sbjct: 110 CIGCCRCMKVCPTDAI---------IGAAKQIHNVIREA-CTGCSSCVDVCPTEALGMMP 159

Query: 123 N 123
            
Sbjct: 160 I 160



 Score = 35.1 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 12/22 (54%)

Query: 97  DIDMIKCIYCGLCQEACPVDAI 118
           ++    CI C  C + CP DAI
Sbjct: 104 EVTEEICIGCCRCMKVCPTDAI 125


>gi|62180215|ref|YP_216632.1| putative pyruvate-flavodoxin oxidoreductase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|62127848|gb|AAX65551.1| putative pyruvate-flavodoxin oxidoreductase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|322714687|gb|EFZ06258.1| putative pyruvate-flavodoxin oxidoreductase [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 1174

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 699

Query: 74  PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           P  A                   +++   R   G +      +    C  C LC E CP 
Sbjct: 700 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757

Query: 116 --------DAIVEGPNFEFATETR 131
                    AI      E   E +
Sbjct: 758 KDRQNPQIKAINMMSRLEHVEEEK 781


>gi|56413424|ref|YP_150499.1| pyruvate-flavodoxin oxidoreductase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|197362347|ref|YP_002141984.1| pyruvate-flavodoxin oxidoreductase [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|56127681|gb|AAV77187.1| probable pyruvate-flavodoxin oxidoreductase [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197093824|emb|CAR59307.1| probable pyruvate-flavodoxin oxidoreductase [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
          Length = 1174

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 699

Query: 74  PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           P  A                   +++   R   G +      +    C  C LC E CP 
Sbjct: 700 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757

Query: 116 --------DAIVEGPNFEFATETR 131
                    AI      E   E +
Sbjct: 758 KDRQNPQIKAINMMSRLEHVEEEK 781


>gi|16764995|ref|NP_460610.1| pyruvate-flavodoxin oxidoreductase [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167992830|ref|ZP_02573926.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|197262637|ref|ZP_03162711.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|16420178|gb|AAL20569.1| putative pyruvate-flavodoxin oxidoreductase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|197240892|gb|EDY23512.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar Saintpaul str. SARA23]
 gi|205329036|gb|EDZ15800.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella
           enterica subsp. enterica serovar 4,[5],12:i:- str.
           CVM23701]
 gi|261246843|emb|CBG24658.1| probable pyruvate-flavodoxin oxidoreductase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267993581|gb|ACY88466.1| putative pyruvate-flavodoxin oxidoreductase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301158179|emb|CBW17676.1| probable pyruvate-flavodoxin oxidoreductase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312912639|dbj|BAJ36613.1| putative pyruvate-flavodoxin oxidoreductase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|323129920|gb|ADX17350.1| putative pyruvate-flavodoxin oxidoreductase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|332988538|gb|AEF07521.1| putative pyruvate-flavodoxin oxidoreductase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 1174

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 699

Query: 74  PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           P  A                   +++   R   G +      +    C  C LC E CP 
Sbjct: 700 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757

Query: 116 --------DAIVEGPNFEFATETR 131
                    AI      E   E +
Sbjct: 758 KDRQDPQIKAINMMSRLEHVEEEK 781


>gi|16760237|ref|NP_455854.1| pyruvate-flavodoxin oxidoreductase [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29141994|ref|NP_805336.1| pyruvate-flavodoxin oxidoreductase [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|213428539|ref|ZP_03361289.1| pyruvate-flavodoxin oxidoreductase [Salmonella enterica subsp.
           enterica serovar Typhi str. E02-1180]
 gi|289825696|ref|ZP_06544867.1| pyruvate-flavodoxin oxidoreductase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25284487|pir||AH0663 probable pyruvate-flavodoxin oxidoreductase (EC 1.-.-.-) [imported]
           - Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16502532|emb|CAD01681.1| probable pyruvate-flavodoxin oxidoreductase [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29137623|gb|AAO69185.1| probable pyruvate-flavodoxin oxidoreductase [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
          Length = 1174

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 699

Query: 74  PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           P  A                   +++   R   G +      +    C  C LC E CP 
Sbjct: 700 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757

Query: 116 --------DAIVEGPNFEFATETR 131
                    AI      E   E +
Sbjct: 758 KDRQNPQIKAINMMSRLEHVEEEK 781


>gi|145218862|ref|YP_001129571.1| putative glutamate synthase (NADPH) small subunit [Prosthecochloris
           vibrioformis DSM 265]
 gi|145205026|gb|ABP36069.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Chlorobium
           phaeovibrioides DSM 265]
          Length = 578

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 6/59 (10%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           C  CK C + CP +A+             +    + D  KC+ C LC   CP   I  G
Sbjct: 521 CFDCKQCVSFCPQEAVIRYRE------NPQGEVVETDYEKCVGCHLCSLVCPSGYIQMG 573


>gi|307942955|ref|ZP_07658300.1| formate dehydrogenase, alpha subunit [Roseibium sp. TrichSKD4]
 gi|307773751|gb|EFO32967.1| formate dehydrogenase, alpha subunit [Roseibium sp. TrichSKD4]
          Length = 924

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 5/77 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114
             + CIAC LCE  C  +    +       G+     +D    + +  C+ CG C  ACP
Sbjct: 144 NLDTCIACNLCERACR-EVQVNDVIGMADRGSHTVPVFDLMDPMGLSSCVACGECVSACP 202

Query: 115 VDAIVEGPNFEFATETR 131
             A++E    + A + R
Sbjct: 203 TGALMEKSLLDEAAKVR 219


>gi|293603975|ref|ZP_06686388.1| NADH:ubiquinone oxidoreductase subunit RnfB [Achromobacter
           piechaudii ATCC 43553]
 gi|292817579|gb|EFF76647.1| NADH:ubiquinone oxidoreductase subunit RnfB [Achromobacter
           piechaudii ATCC 43553]
          Length = 214

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 24/70 (34%), Gaps = 10/70 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L      E  CI C LC   CP  AI   +             + +    C  C LC   
Sbjct: 76  LLVARIDESHCIGCTLCIQACPVDAIVGANK----------HMHTVLADWCTGCDLCVAP 125

Query: 113 CPVDAIVEGP 122
           CPVD I   P
Sbjct: 126 CPVDCIQMVP 135


>gi|294146592|ref|YP_003559258.1| NAD-dependent formate dehydrogenase alpha subunit [Sphingobium
           japonicum UT26S]
 gi|292677009|dbj|BAI98526.1| NAD-dependent formate dehydrogenase alpha subunit [Sphingobium
           japonicum UT26S]
          Length = 948

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 3/81 (3%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T      G         +   D    +C+ CG C +
Sbjct: 160 YFDFDPSKCILCSRCVRACDEVQGTFALTIEGRGFDSKVSPSQGQDFLSSECVSCGACVQ 219

Query: 112 ACPVDAIVEGPNFEFATETRQ 132
           ACP   + E    E  T  R 
Sbjct: 220 ACPTATLTEKKVVEVGTPDRS 240


>gi|296136307|ref|YP_003643549.1| electron transport complex, RnfABCDGE type, B subunit [Thiomonas
           intermedia K12]
 gi|295796429|gb|ADG31219.1| electron transport complex, RnfABCDGE type, B subunit [Thiomonas
           intermedia K12]
          Length = 210

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 32/109 (29%), Gaps = 18/109 (16%)

Query: 24  LRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG 83
           L +  +   T   P          R    +         CI C LC   CP  AI   S 
Sbjct: 57  LAHLLQRPATALDPSCGTEGP---RERAVI-----DPALCIGCTLCIQACPVDAIAGVSK 108

Query: 84  PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
                  R     D     C  C LC   CPVD I      + A  TR 
Sbjct: 109 -------RMHTVIDDW---CTGCALCLPPCPVDCIRMEAQADPALATRS 147


>gi|227498364|ref|ZP_03928514.1| pyruvate:ferredoxin oxidoreductase [Acidaminococcus sp. D21]
 gi|226903826|gb|EEH89744.1| pyruvate:ferredoxin oxidoreductase [Acidaminococcus sp. D21]
          Length = 1178

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 22/84 (26%), Gaps = 18/84 (21%)

Query: 57  PNGEERCIACKLCEAICPAQAITI----------------ESGPRCHDGTRRTVRYDIDM 100
                 CI C  C  +CP  AI                                R  +  
Sbjct: 695 EWQTANCIQCNQCALVCPHAAIRPILVDAKELAAAPAGFATKKAIGPALAAYEYRMQVSP 754

Query: 101 IKCIYCGLCQEACP--VDAIVEGP 122
           + C  CG C   CP    A+V  P
Sbjct: 755 LDCTGCGSCVNVCPAKEKALVMKP 778


>gi|237808209|ref|YP_002892649.1| electron transport complex, RnfABCDGE type, B subunit [Tolumonas
           auensis DSM 9187]
 gi|259494048|sp|C4LEP6|RNFB_TOLAT RecName: Full=Electron transport complex protein rnfB
 gi|237500470|gb|ACQ93063.1| electron transport complex, RnfABCDGE type, B subunit [Tolumonas
           auensis DSM 9187]
          Length = 185

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 25/82 (30%), Gaps = 10/82 (12%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E  S           R     E  CI C  C   CP  AI               + + I
Sbjct: 91  EPPSDDNELLMAPPKRVAFIHENLCIGCTKCIQACPVDAIIGAPK----------LMHTI 140

Query: 99  DMIKCIYCGLCQEACPVDAIVE 120
              +C  C LC + CP + I  
Sbjct: 141 LRSECTGCDLCVDPCPTNCIEM 162



 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/25 (52%), Positives = 15/25 (60%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           I    CI C  C +ACPVDAI+  P
Sbjct: 110 IHENLCIGCTKCIQACPVDAIIGAP 134


>gi|220905362|ref|YP_002480674.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219869661|gb|ACL49996.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 653

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 21/64 (32%), Gaps = 7/64 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              RC+ C  C   CP  AI            R   +  +    C  CGLC   CP  AI
Sbjct: 581 DMRRCVNCGKCIQCCPFGAIK-------EVEVRGEGKAQVIETVCQGCGLCTATCPQGAI 633

Query: 119 VEGP 122
               
Sbjct: 634 QLSH 637



 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 28/97 (28%), Gaps = 13/97 (13%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPA----QAITIE----SGPRCHDGTRRTVRYD 97
            F  +   R        C  C  C   CP+     A   E    +            +  
Sbjct: 225 NFTVKIRKRATYVDWSLCTGCGACTEKCPSKKTPDAFNEEISNTTAITIAFPQAIPKKAV 284

Query: 98  IDMIKCI-----YCGLCQEACPVDAIVEGPNFEFATE 129
           I+   C       CG+C + CP  AI      E  TE
Sbjct: 285 INAGHCRQFIKGKCGVCAKICPTGAIKYDMEDEIITE 321



 Score = 34.7 bits (78), Expect = 4.1,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVE 120
            +DM +C+ CG C + CP  AI E
Sbjct: 579 QVDMRRCVNCGKCIQCCPFGAIKE 602


>gi|167761074|ref|ZP_02433201.1| hypothetical protein CLOSCI_03472 [Clostridium scindens ATCC 35704]
 gi|167661308|gb|EDS05438.1| hypothetical protein CLOSCI_03472 [Clostridium scindens ATCC 35704]
          Length = 606

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 14/97 (14%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
           L    +F+ +   +   ++            L R+    E+CI C +C   CPA AI+  
Sbjct: 509 LTTIQYFREEYEAHIREKRCPAGVC----KELTRFAIQPEKCIGCDMCARGCPASAISGG 564

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                         + ID  KCI CG C+EAC  DA+
Sbjct: 565 KKE----------IHAIDPEKCIACGSCREACKFDAV 591



 Score = 41.2 bits (95), Expect = 0.043,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 16/44 (36%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            I          +   R+ I   KCI C +C   CP  AI  G 
Sbjct: 522 HIREKRCPAGVCKELTRFAIQPEKCIGCDMCARGCPASAISGGK 565


>gi|218780366|ref|YP_002431684.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761750|gb|ACL04216.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 724

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 18/62 (29%), Gaps = 1/62 (1%)

Query: 63  CIACKLCEAICPAQAITIESG-PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           C+ C  C  +C  +                    +     KCI CG C   CP  A+   
Sbjct: 585 CLRCGKCVEVCRDRMKVNALELGYFDFDHPVKTDFRKIQEKCILCGACATNCPTGAMQIR 644

Query: 122 PN 123
             
Sbjct: 645 DE 646


>gi|150402417|ref|YP_001329711.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C7]
 gi|150033447|gb|ABR65560.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           maripaludis C7]
          Length = 352

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 32/71 (45%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R    L      ++ C+ C +C   CPA AI +                 +D+  C+YC 
Sbjct: 139 RKSLVLGEITIKKDACVLCGICAEYCPADAIELIPNEMNALSLNPIADIKVDLDACVYCK 198

Query: 108 LCQEACPVDAI 118
           +C++ACP +AI
Sbjct: 199 VCEKACPHNAI 209



 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 1/82 (1%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
             +   +     R     + +C+ C+ CE +CP Q             +       I   
Sbjct: 94  PITEMSQYPKIKRGIELNQSKCVLCEQCELVCP-QCAIDVERELPERKSLVLGEITIKKD 152

Query: 102 KCIYCGLCQEACPVDAIVEGPN 123
            C+ CG+C E CP DAI   PN
Sbjct: 153 ACVLCGICAEYCPADAIELIPN 174



 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 5/89 (5%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
              R     R     +  C+ C +C  ICP  AI +        G     + DI   KC+
Sbjct: 14  EISRSGVEKRVLKWDDCTCVGCGICSEICPTSAIEMGPLGAIFKGELDAPKLDIS-EKCV 72

Query: 105 YCGLCQEACPVDA----IVEGPNFEFATE 129
            CG+C  ACP DA    I + P  E +  
Sbjct: 73  LCGMCACACPFDAVKLSINDKPITEMSQY 101



 Score = 42.4 bits (98), Expect = 0.018,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 28/75 (37%), Gaps = 8/75 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRC--------HDGTRRTVRYDIDMIKCIYCGLCQ 110
             + C+ CK+CE  CP  AI                        + +ID   C+ CG C 
Sbjct: 190 DLDACVYCKVCEKACPHNAIEAICYKCPLASRIKEPELYKEIKGQTNIDKDLCVSCGWCA 249

Query: 111 EACPVDAIVEGPNFE 125
             CP DAI     FE
Sbjct: 250 NICPADAITVEKPFE 264



 Score = 41.2 bits (95), Expect = 0.047,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 8/83 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +  +    F GE  +      E  C AC  C ++CP  A+     P+      +   
Sbjct: 252 CPADAITVEKPFEGELII-----DEPACNACGACISVCPCNALVF---PQPEKQGDKVPN 303

Query: 96  YDIDMIKCIYCGLCQEACPVDAI 118
             ++   CI CG C  +CPVDA+
Sbjct: 304 VVVNQDVCILCGACTHSCPVDAL 326



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 8/64 (12%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              ++ C++C  C  ICPA AIT+E                ID   C  CG C   CP +
Sbjct: 236 NIDKDLCVSCGWCANICPADAITVEKPFEGEL--------IIDEPACNACGACISVCPCN 287

Query: 117 AIVE 120
           A+V 
Sbjct: 288 ALVF 291



 Score = 38.9 bits (89), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR----YDIDMIKCIYCGLCQEAC 113
           +  E+C+ C +C   CP  A+ +    +      +  +     +++  KC+ C  C+  C
Sbjct: 66  DISEKCVLCGMCACACPFDAVKLSINDKPITEMSQYPKIKRGIELNQSKCVLCEQCELVC 125

Query: 114 PVDAI 118
           P  AI
Sbjct: 126 PQCAI 130


>gi|146292947|ref|YP_001183371.1| electron transport complex protein RnfB [Shewanella putrefaciens
           CN-32]
 gi|145564637|gb|ABP75572.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           putrefaciens CN-32]
 gi|319426524|gb|ADV54598.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           putrefaciens 200]
          Length = 199

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 23/62 (37%), Gaps = 10/62 (16%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C   CP  AI               + + +    C  C LC E CPVD I  
Sbjct: 112 DECIGCTKCIQACPVDAIIGAGK----------LMHTVLTTDCTGCDLCVEPCPVDCIDM 161

Query: 121 GP 122
            P
Sbjct: 162 IP 163



 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                ++      I   +CI C  C +ACPVDAI
Sbjct: 96  NAEAQSQVKKVAFIREDECIGCTKCIQACPVDAI 129


>gi|187923233|ref|YP_001894875.1| ferredoxin [Burkholderia phytofirmans PsJN]
 gi|187714427|gb|ACD15651.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           phytofirmans PsJN]
          Length = 279

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ CI C LC   CP  AI                 + + +  C  C LC   CPVD I
Sbjct: 85  DEQVCIGCTLCMQACPVDAIVGAPKQ----------MHTVIVELCTGCDLCVPPCPVDCI 134

Query: 119 VEGP 122
              P
Sbjct: 135 ALPP 138



 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 14/21 (66%), Positives = 15/21 (71%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C LC +ACPVDAI
Sbjct: 84  IDEQVCIGCTLCMQACPVDAI 104


>gi|78222780|ref|YP_384527.1| Iron-sulfur cluster-binding protein [Geobacter metallireducens
           GS-15]
 gi|78194035|gb|ABB31802.1| Iron-sulfur cluster-binding protein [Geobacter metallireducens
           GS-15]
          Length = 320

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 10/83 (12%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            PF+   ++    G           + CI C LC+  C   AI +    +          
Sbjct: 146 CPFDCPKSATNDVGFQGAIWPVLYADECIGCGLCDKSCTEDAIVMGDDGKP--------- 196

Query: 96  YDIDMIKCIYCGLCQEACPVDAI 118
                  C+YCG C + CP +A 
Sbjct: 197 -RFIPENCLYCGDCLKVCPSEAW 218



 Score = 37.4 bits (85), Expect = 0.74,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           CP       +      G    V Y     +CI CGLC ++C  DAIV G +
Sbjct: 146 CPFDCPKSATNDVGFQGAIWPVLY---ADECIGCGLCDKSCTEDAIVMGDD 193


>gi|134301119|ref|YP_001114615.1| hydrogenase [Desulfotomaculum reducens MI-1]
 gi|134053819|gb|ABO51790.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
           [Desulfotomaculum reducens MI-1]
          Length = 594

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 7/85 (8%)

Query: 59  GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDM--IKCIYCGLCQEACPV 115
              +CI C+ CE  C   Q   I SG             +I M    C YCG C   CP 
Sbjct: 163 DANKCIYCRRCETACNEVQTCGILSGIGRGFNAFVGPFANIPMVESSCTYCGQCVMVCPT 222

Query: 116 DAIVEGPNFEFATETRQELYYDKER 140
            A+ E     + T+   E   D ++
Sbjct: 223 AALTEV----YHTDKVWEAINDPDK 243


>gi|323694963|ref|ZP_08109113.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Clostridium symbiosum WAL-14673]
 gi|323501053|gb|EGB16965.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Clostridium symbiosum WAL-14673]
          Length = 261

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 12/88 (13%)

Query: 31  KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT 90
             ++    E G  +P F       +     ++CI+C  C   CP   I+IE G       
Sbjct: 157 PVSLVGKIESGPVNPLFYRLFVKDKGFTVSDKCISCGKCALRCPLNNISIEGGKP----- 211

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                  +   +C +C  C   CP +AI
Sbjct: 212 -------VWKGRCTHCMACIGGCPTEAI 232


>gi|298373183|ref|ZP_06983173.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroidetes oral
           taxon 274 str. F0058]
 gi|298276087|gb|EFI17638.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroidetes oral
           taxon 274 str. F0058]
          Length = 1184

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 30/109 (27%), Gaps = 23/109 (21%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           EK   SP      A        E CI C  C  +CP   I                  DI
Sbjct: 674 EKRGVSPSVPEWTA--------ENCIQCNQCAYVCPHACIRPFVLDENEQKGFDAKLLDI 725

Query: 99  DMIK---------------CIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
              K               C+ C  C + CP   I    +   A E+ +
Sbjct: 726 KSPKEFVGMKYRIQVGVMDCVGCKNCVDVCPGVKIDGVQHKALAMESFE 774


>gi|284161525|ref|YP_003400148.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Archaeoglobus profundus DSM 5631]
 gi|284011522|gb|ADB57475.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Archaeoglobus profundus DSM 5631]
          Length = 617

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 24/71 (33%), Gaps = 11/71 (15%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R    L  +   + +C  C  C  +    AI ++                ID   C  CG
Sbjct: 553 RKGVKLLPFEILQNKCNNCGECYRVFSCPAIYLDGEK-----------PQIDPALCTSCG 601

Query: 108 LCQEACPVDAI 118
           +C   CP  AI
Sbjct: 602 VCARICPERAI 612


>gi|281357693|ref|ZP_06244180.1| nitroreductase [Victivallis vadensis ATCC BAA-548]
 gi|281315950|gb|EFA99976.1| nitroreductase [Victivallis vadensis ATCC BAA-548]
          Length = 269

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 11/60 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E CI C  C   CP   + +                 +   +CI CG C   CP +AI
Sbjct: 9   NSEACIRCGFCIDDCPTCVLEMGEAG-----------PQVREDQCIECGHCVSVCPTEAI 57



 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 3/33 (9%)

Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
             CI CG C + CP   +  G   E   + R++
Sbjct: 11  EACIRCGFCIDDCPTCVLEMG---EAGPQVRED 40


>gi|258542560|ref|YP_003187993.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256633638|dbj|BAH99613.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256636697|dbj|BAI02666.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256639750|dbj|BAI05712.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256642806|dbj|BAI08761.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256645861|dbj|BAI11809.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256648914|dbj|BAI14855.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256651901|dbj|BAI17835.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256654958|dbj|BAI20885.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 1195

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 24/87 (27%), Gaps = 23/87 (26%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDG----------------TRRTVRYDIDMI 101
              + CI C  C  +CP   I  ++      G                          + 
Sbjct: 693 WNPDTCIQCGQCSIVCPHSVIRAKTYEEKDLGGAPESFKSAPVNARGYPDSRFTLQFYVE 752

Query: 102 KCIYCGLCQEACP-------VDAIVEG 121
            C  CG+C E CP         AI  G
Sbjct: 753 DCTGCGVCVENCPAINPDGETRAINMG 779


>gi|255527515|ref|ZP_05394383.1| ferredoxin [Clostridium carboxidivorans P7]
 gi|255508785|gb|EET85157.1| ferredoxin [Clostridium carboxidivorans P7]
          Length = 252

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 20/65 (30%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           +  E C+ C LC   C        S             Y      CI CG C   CP +A
Sbjct: 121 DNTENCVLCGLCAKACKKLGTGAISTVNRGIYKEVDTPYHEPSPACIGCGSCANVCPTNA 180

Query: 118 IVEGP 122
           I    
Sbjct: 181 IKIVD 185


>gi|227831526|ref|YP_002833306.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus L.S.2.15]
 gi|227457974|gb|ACP36661.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus L.S.2.15]
          Length = 94

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 27/75 (36%), Gaps = 11/75 (14%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G   + +      +CI CK+C   CP   I   +G              +D   C  CG+
Sbjct: 30  GAWRIVKPVVDYNKCIGCKVCFIFCPESTIVPSNGKV-----------RVDYEYCKGCGV 78

Query: 109 CQEACPVDAIVEGPN 123
           C   CPV AI     
Sbjct: 79  CANVCPVKAISMVNE 93


>gi|206901578|ref|YP_002250818.1| iron-sulfur cluster-binding protein [Dictyoglomus thermophilum
           H-6-12]
 gi|206740681|gb|ACI19739.1| iron-sulfur cluster-binding protein [Dictyoglomus thermophilum
           H-6-12]
          Length = 266

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 27/77 (35%), Gaps = 5/77 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-----DIDMIKCIYCGLCQEAC 113
             E+C  C LC   CP   +T+           R+         +    CI CG+C++ C
Sbjct: 168 DIEKCTGCGLCVKACPRGILTLLPINIPLLLGCRSELPGPEARKVCSKACIGCGICEKVC 227

Query: 114 PVDAIVEGPNFEFATET 130
           P  AI     F      
Sbjct: 228 PKGAIKMDGRFPVIDYN 244



 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 11/62 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + CI C +CE +CP  AI ++                ID   C  CG+C E CP  A+
Sbjct: 213 CSKACIGCGICEKVCPKGAIKMDG-----------RFPVIDYNLCDGCGICVEKCPTKAL 261

Query: 119 VE 120
           + 
Sbjct: 262 IL 263



 Score = 40.5 bits (93), Expect = 0.072,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 10/59 (16%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           Y      C+    C  +CP  AI +                 ID+ KC  CGLC +ACP
Sbjct: 135 YKGCTTGCLGFGDCVKVCPFDAIYMGEDGLPK----------IDIEKCTGCGLCVKACP 183


>gi|126727112|ref|ZP_01742949.1| dihydropyrimidine dehydrogenase [Rhodobacterales bacterium
           HTCC2150]
 gi|126703540|gb|EBA02636.1| dihydropyrimidine dehydrogenase [Rhodobacterales bacterium
           HTCC2150]
          Length = 434

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 8/74 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117
            +  CI+C  C A C       E             ++ +   +C+ C LC E CPV+  
Sbjct: 343 NQNDCISCGRCFAAC-------EDTSHQAIAMSDDRKFSVVDAECVACNLCVEVCPVEGC 395

Query: 118 IVEGPNFEFATETR 131
           I   P    + + R
Sbjct: 396 ITMVPQTAGSVDPR 409


>gi|146311788|ref|YP_001176862.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing
           protein [Enterobacter sp. 638]
 gi|145318664|gb|ABP60811.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Enterobacter sp. 638]
          Length = 1174

 Score = 46.6 bits (109), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPVGTTRWEKRNIAEAIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           P  A                   +++   R   G +      +    C  C LC E CP 
Sbjct: 700 PHSAIRAKVVSPEEMENAPSSLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757

Query: 116 --------DAIVEGPNFEFATETR 131
                    AI      E   E +
Sbjct: 758 KDRQNPEIKAINMMSRLEHVEEEK 781


>gi|332983267|ref|YP_004464708.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Mahella australiensis 50-1 BON]
 gi|332700945|gb|AEE97886.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Mahella
           australiensis 50-1 BON]
          Length = 366

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 10/63 (15%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           +   EE+C   + C   C   A + +   +          Y I+   C YC  C  ACP 
Sbjct: 180 FNWDEEKCEHDRECIKACRYNANSFDEDGK----------YHINYDNCTYCQHCVNACPT 229

Query: 116 DAI 118
            A+
Sbjct: 230 GAL 232


>gi|332800413|ref|YP_004461912.1| NADH dehydrogenase (quinone) [Tepidanaerobacter sp. Re1]
 gi|332698148|gb|AEE92605.1| NADH dehydrogenase (quinone) [Tepidanaerobacter sp. Re1]
          Length = 625

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 13/82 (15%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           EK   S   +G   L   P+   +C  C  C  ICPA AI  ++               I
Sbjct: 556 EKRCPSKVCKGLGQLAIDPD---KCRGCGKCRKICPASAIEGKTREPHK----------I 602

Query: 99  DMIKCIYCGLCQEACPVDAIVE 120
           D+ +C+ C  C +ACP DAI E
Sbjct: 603 DITRCLRCLACIDACPFDAIRE 624



 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 17/49 (34%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           +         +          +   +  ID  KC  CG C++ CP  AI
Sbjct: 544 KYFKDEYMAHVVEKRCPSKVCKGLGQLAIDPDKCRGCGKCRKICPASAI 592


>gi|325299905|ref|YP_004259822.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           salanitronis DSM 18170]
 gi|324319458|gb|ADY37349.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           salanitronis DSM 18170]
          Length = 297

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 25/76 (32%), Gaps = 8/76 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------DMIKCIYCGLCQ 110
            EE+C AC  C   CP   I I    +                         CI CG C 
Sbjct: 169 DEEKCTACGACAKACPRNIIEIRPKGKNSRRVYVQCVNKDKGAVARKACTAACIGCGKCV 228

Query: 111 EACPVDAIVEGPNFEF 126
           + CP +AI    N  +
Sbjct: 229 KVCPFEAITLENNLAY 244



 Score = 41.6 bits (96), Expect = 0.034,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 9/60 (15%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+ C  C + C   AI +                ++D  KC  CG C +ACP + I   P
Sbjct: 142 CLGCGDCVSACQFGAIRMNPETGLP---------EVDEEKCTACGACAKACPRNIIEIRP 192



 Score = 38.9 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 11/60 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI C  C  +CP +AIT+E+               ID  KC  C  C+  CP  AI
Sbjct: 217 CTAACIGCGKCVKVCPFEAITLENNLAY-----------IDPAKCKSCRKCETECPQGAI 265


>gi|325968335|ref|YP_004244527.1| formate dehydrogenase, subunit alpha [Vulcanisaeta moutnovskia
           768-28]
 gi|323707538|gb|ADY01025.1| formate dehydrogenase, alpha subunit [Vulcanisaeta moutnovskia
           768-28]
          Length = 897

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 5/88 (5%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD- 97
           E     P  + +            C+ C+ C   C     + ++      G    V +D 
Sbjct: 116 EPAPIIPDIKIDDTHPAIVFNPSACVMCRKCVIACSID-QSNDTITVIGRGLDTRVGFDL 174

Query: 98  ---IDMIKCIYCGLCQEACPVDAIVEGP 122
              + +  C+ CG C +ACP  A++E  
Sbjct: 175 DVPMGVSSCVSCGACIDACPTGALMERD 202


>gi|297616733|ref|YP_003701892.1| hydrogenase, Fe-only [Syntrophothermus lipocalidus DSM 12680]
 gi|297144570|gb|ADI01327.1| hydrogenase, Fe-only [Syntrophothermus lipocalidus DSM 12680]
          Length = 563

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 1/67 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              +C  C  C  +C           +         +  I   KC+ CG C  ACPV AI
Sbjct: 138 DPSKCTLCGRCVEVCNDIQTVGALEIKDGVVQTVDGKPLI-ETKCVMCGQCALACPVGAI 196

Query: 119 VEGPNFE 125
            E    +
Sbjct: 197 TEKEEID 203


>gi|262368735|ref|ZP_06062064.1| electron transport complex protein [Acinetobacter johnsonii SH046]
 gi|262316413|gb|EEY97451.1| electron transport complex protein [Acinetobacter johnsonii SH046]
          Length = 264

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 30/85 (35%), Gaps = 10/85 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E+     +  G     +    E+ CI C  C + CP  AI               + + I
Sbjct: 68  EESIWPIQADGRPQRMKAIIREDECIGCTKCISACPVDAIIGSGK----------LMHSI 117

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPN 123
               C  C LC   CPVD I   P+
Sbjct: 118 LTDLCTGCELCIPPCPVDCIDLIPD 142


>gi|258545780|ref|ZP_05706014.1| electron transport complex protein RnfC [Cardiobacterium hominis
           ATCC 15826]
 gi|258518970|gb|EEV87829.1| electron transport complex protein RnfC [Cardiobacterium hominis
           ATCC 15826]
          Length = 630

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 2/70 (2%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP + +  +                  +  CI CG+C   CP  AI
Sbjct: 371 EESPCIRCSRCADACPME-LLPQQLLWYSQSDEHKRLKQYRLYDCIECGICAAVCP-SAI 428

Query: 119 VEGPNFEFAT 128
                +  + 
Sbjct: 429 PLVQYYRHSK 438


>gi|227499762|ref|ZP_03929862.1| ferredoxin [Anaerococcus tetradius ATCC 35098]
 gi|227218148|gb|EEI83414.1| ferredoxin [Anaerococcus tetradius ATCC 35098]
          Length = 57

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 27/65 (41%), Gaps = 11/65 (16%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
             Y   E  CI+C  CE  CP  AI                 Y+ID   CI CG C   C
Sbjct: 1   MAYRIDENTCISCGSCEGECPVGAIAQGDAA-----------YEIDADACIDCGSCAAVC 49

Query: 114 PVDAI 118
           PV+AI
Sbjct: 50  PVEAI 54



 Score = 34.3 bits (77), Expect = 6.5,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 16/27 (59%)

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGP 122
           Y ID   CI CG C+  CPV AI +G 
Sbjct: 3   YRIDENTCISCGSCEGECPVGAIAQGD 29


>gi|239617465|ref|YP_002940787.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Kosmotoga
           olearia TBF 19.5.1]
 gi|239506296|gb|ACR79783.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Kosmotoga
           olearia TBF 19.5.1]
          Length = 354

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 14/68 (20%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C+AC +CE  CP  AITIE   R            ID   CI CG C   C   A    
Sbjct: 193 NCVACGMCERHCPVGAITIEGVAR------------IDYDICIGCGQCIAMCNYGA--MV 238

Query: 122 PNFEFATE 129
           P ++ +TE
Sbjct: 239 PKWDSSTE 246


>gi|164688084|ref|ZP_02212112.1| hypothetical protein CLOBAR_01729 [Clostridium bartlettii DSM
           16795]
 gi|164602497|gb|EDQ95962.1| hypothetical protein CLOBAR_01729 [Clostridium bartlettii DSM
           16795]
          Length = 598

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 7/85 (8%)

Query: 59  GEERCIACKLCEAIC-PAQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115
             ++CI C+ CE +C   Q + + SG      T     ++ D+ K  C +CG C   CP 
Sbjct: 147 DNDKCILCRRCETMCNQVQKVGVLSGVNRGFSTEIGTFFETDLAKTECTFCGQCINVCPT 206

Query: 116 DAIVEGPNFEFATETRQELYYDKER 140
            A++E  N + A      L   KE+
Sbjct: 207 GALLEKDNTDEAW----GLLAQKEK 227


>gi|150401260|ref|YP_001325026.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus aeolicus Nankai-3]
 gi|150013963|gb|ABR56414.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           aeolicus Nankai-3]
          Length = 314

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 9/87 (10%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
                    G  +L +    +++C+ C LCE  CP     ++          +     I 
Sbjct: 225 PIPPIQNILGRFSLIKMSIDKDKCVDCGLCEKNCPMDIKLLD---------YKNENKRIL 275

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEF 126
             +CI C  C   CP  AI     F+F
Sbjct: 276 STECILCSTCSSVCPKHAISTKIKFDF 302



 Score = 33.5 bits (75), Expect = 9.2,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 6/99 (6%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
              +F + L ++ +  T  NYP  +          + L               C+ +CP 
Sbjct: 167 LFLSFGIVLYFWNRGYTIYNYPEREILWFVVGLLLYYLSGIILAFAFNDNRAFCKYLCP- 225

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                    +   G    ++  ID  KC+ CGLC++ CP
Sbjct: 226 -----IPPIQNILGRFSLIKMSIDKDKCVDCGLCEKNCP 259


>gi|76666788|emb|CAJ31166.1| Iron-sulfur-binding protein, glutamate synthase (dsrL/gltD)
           [uncultured sulfate-reducing bacterium]
          Length = 558

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 2/63 (3%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           +   RC++C +C         +            +   Y   +  C+ C  C E CP   
Sbjct: 497 DEAVRCMSCGMCFDCGT--CWSYCQENAIIKPLVKGEAYKFKLEYCVGCAKCAETCPCGY 554

Query: 118 IVE 120
           I  
Sbjct: 555 IEM 557


>gi|120598968|ref|YP_963542.1| electron transport complex protein RnfB [Shewanella sp. W3-18-1]
 gi|120559061|gb|ABM24988.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           sp. W3-18-1]
          Length = 199

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 23/62 (37%), Gaps = 10/62 (16%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C   CP  AI               + + +    C  C LC E CPVD I  
Sbjct: 112 DECIGCTKCIQACPVDAIIGAGK----------LMHTVLTTDCTGCDLCVEPCPVDCIDM 161

Query: 121 GP 122
            P
Sbjct: 162 IP 163



 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                ++      I   +CI C  C +ACPVDAI
Sbjct: 96  NAEAQSQVKKVAFIREDECIGCTKCIQACPVDAI 129


>gi|319902323|ref|YP_004162051.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           helcogenes P 36-108]
 gi|319417354|gb|ADV44465.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           helcogenes P 36-108]
          Length = 320

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 8/81 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------DMIKCIYCGLCQ 110
            E +C AC  C   CP   I I    +                       + CI CG C 
Sbjct: 169 DEAKCTACGACAKACPKNIIEIRPQGKKSRRIYVQCVNKDKGAVARKACTVACIGCGKCV 228

Query: 111 EACPVDAIVEGPNFEFATETR 131
           + CP +AI    N  +    +
Sbjct: 229 KVCPFEAITLENNLAYIDPNK 249



 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 9/65 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C+ C  C A C   AI +                ++D  KC  CG C +ACP + I
Sbjct: 138 CSYGCLGCGDCVAACQFGAIHMNPETGLP---------EVDEAKCTACGACAKACPKNII 188

Query: 119 VEGPN 123
              P 
Sbjct: 189 EIRPQ 193



 Score = 40.1 bits (92), Expect = 0.099,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 11/60 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI C  C  +CP +AIT+E+               ID  KC  C  C+EACP D I
Sbjct: 217 CTVACIGCGKCVKVCPFEAITLENNLAY-----------IDPNKCKSCRKCEEACPQDTI 265


>gi|317486932|ref|ZP_07945742.1| glycyl-radical enzyme activating family protein [Bilophila
           wadsworthia 3_1_6]
 gi|316921807|gb|EFV43083.1| glycyl-radical enzyme activating family protein [Bilophila
           wadsworthia 3_1_6]
          Length = 299

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 11/62 (17%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           +  C  C  C  +C   A              +  R+  D  +C+ CG C E CP  A  
Sbjct: 53  QNLCSGCGHCVQVCTHGAA-----------IEKGGRFLRDFSRCVGCGACAEQCPTTASS 101

Query: 120 EG 121
             
Sbjct: 102 MS 103


>gi|315651314|ref|ZP_07904342.1| electron transport complex protein RnfB [Eubacterium saburreum DSM
           3986]
 gi|315486466|gb|EFU76820.1| electron transport complex protein RnfB [Eubacterium saburreum DSM
           3986]
          Length = 271

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 28/90 (31%), Gaps = 11/90 (12%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
            K     P+E  +       +         E  CIAC +C   C   AI +         
Sbjct: 183 KKLIDLVPYETFTFVHCNSQDKGKAVKEVCEVGCIACTMCVRACEDDAIHMNGNVAL--- 239

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
                   ID  KCI CG C   CP   I 
Sbjct: 240 --------IDYSKCINCGKCAAKCPTKVIQ 261



 Score = 38.2 bits (87), Expect = 0.35,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 5/78 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGT-----RRTVRYDIDMIKCIYCGLCQEAC 113
             ++C+AC  C   CP + I +               +     ++  + CI C +C  AC
Sbjct: 167 DRDKCVACGKCVDACPKKLIDLVPYETFTFVHCNSQDKGKAVKEVCEVGCIACTMCVRAC 226

Query: 114 PVDAIVEGPNFEFATETR 131
             DAI    N      ++
Sbjct: 227 EDDAIHMNGNVALIDYSK 244



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 11/64 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C+    C  +C   +I I  G              +D  KC+ CG C +ACP   I
Sbjct: 138 CSYGCMGFGSCVKVCEFDSIHIVDGIAL-----------VDRDKCVACGKCVDACPKKLI 186

Query: 119 VEGP 122
              P
Sbjct: 187 DLVP 190


>gi|227874298|ref|ZP_03992485.1| electron transport complex, RnfABCDGE type, B subunit [Oribacterium
           sinus F0268]
 gi|227839849|gb|EEJ50292.1| electron transport complex, RnfABCDGE type, B subunit [Oribacterium
           sinus F0268]
          Length = 295

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 12/83 (14%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P++K                 +    CIAC +CE  CP  AI + +             
Sbjct: 195 VPYKKKHIVSCKNLLKGKAVKDSCSIGCIACGICEKNCPFDAIHVLNDLA---------- 244

Query: 96  YDIDMIKCIYCGLCQEACPVDAI 118
             +   KC  CG+C + CP  AI
Sbjct: 245 --VMNEKCTDCGICAQKCPTSAI 265



 Score = 40.9 bits (94), Expect = 0.061,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 5/66 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRT-----VRYDIDMIKCIYCGLCQEAC 113
            +E+C AC  C   CP   I+     + H  + +         D   I CI CG+C++ C
Sbjct: 173 DKEKCTACGACIKACPKALISFVPYKKKHIVSCKNLLKGKAVKDSCSIGCIACGICEKNC 232

Query: 114 PVDAIV 119
           P DAI 
Sbjct: 233 PFDAIH 238


>gi|254486347|ref|ZP_05099552.1| dihydroorotate dehydrogenase family protein [Roseobacter sp.
           GAI101]
 gi|214043216|gb|EEB83854.1| dihydroorotate dehydrogenase family protein [Roseobacter sp.
           GAI101]
          Length = 425

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/131 (18%), Positives = 37/131 (28%), Gaps = 15/131 (11%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRY----PNGEERCIACKLC 69
           +E +        Y      T      + +             Y       E+ CI+C  C
Sbjct: 288 QEMISGLS---EYLDDKGMTSVDQLVRRAVPNVTDWNQLNLNYVAKAKINEDLCISCGRC 344

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DAIVEGPNFEFAT 128
            A C       E              + +   +C+ C LC   CPV + I         T
Sbjct: 345 FAAC-------EDTSHQAIAMSEDRTFSVIDAECVACNLCVNVCPVENCITMETMAPGTT 397

Query: 129 ETRQELYYDKE 139
           + R     +KE
Sbjct: 398 DPRTGKVVEKE 408


>gi|83589786|ref|YP_429795.1| thiamine pyrophosphate enzyme [Moorella thermoacetica ATCC 39073]
 gi|83572700|gb|ABC19252.1| Thiamine pyrophosphate enzyme [Moorella thermoacetica ATCC 39073]
          Length = 592

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 22/65 (33%), Gaps = 12/65 (18%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           Y   +  CI+C  C       A+  +                     C  CGLC + CPV
Sbjct: 538 YQVDQIACISCHTCIKELGCPALRPDGNGVQ------------IAATCTGCGLCSQVCPV 585

Query: 116 DAIVE 120
            AI E
Sbjct: 586 AAIEE 590


>gi|116754867|ref|YP_843985.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanosaeta thermophila PT]
 gi|116666318|gb|ABK15345.1| formylmethanofuran dehydrogenase, subunit F [Methanosaeta
           thermophila PT]
          Length = 429

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 4/87 (4%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E+       R    L    +    C  C LC  ICP +AI+++  P       +    D+
Sbjct: 178 EREKDPRDLRPYEQLLIDED---LCDYCGLCVGICPEEAISVKGDPLDATLDLKGSI-DV 233

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFE 125
           D  +CI CG C   CP +A+     FE
Sbjct: 234 DQERCIGCGRCAIVCPYEAMDVIRPFE 260



 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E+C  C +C   C  +A  +    +     R   +  ID   C YCGLC   CP +AI
Sbjct: 157 DREKCNLCGICARFC--KAFVLLEREKDPRDLRPYEQLLIDEDLCDYCGLCVGICPEEAI 214



 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 8/79 (10%)

Query: 59  GEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
             + C+ C +C   CP  A      +   +  D   R +R      +C+ C LC+  CP 
Sbjct: 70  DLDACVFCGMCANFCPVNAYRFTVNDVDIKTDDRYPRLLRKAEPNERCLPCTLCEPVCPT 129

Query: 116 DAIVEGPNFEFATETRQEL 134
           +AI    N     +TR++ 
Sbjct: 130 EAITVVFN-----KTREDF 143



 Score = 42.8 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 29/80 (36%), Gaps = 10/80 (12%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93
           I  P+E       F GE  L R    +   + C  C  +CPA    ++   R        
Sbjct: 246 IVCPYEAMDVIRPFEGEIRLVRDRLAKCDPVGCHGCFNVCPADCWYVDDQGRIG------ 299

Query: 94  VRYDIDMIKCIYCGLCQEAC 113
               +   +CI CG C  AC
Sbjct: 300 ----VVEDQCILCGACSRAC 315



 Score = 41.6 bits (96), Expect = 0.039,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 1/74 (1%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R     +      + C  C +C ++CP +A+          G        ID+  C++CG
Sbjct: 20  RSGDITKILDYDYKICNGCAICVSLCPTKALQSGPILEIATGLDAPPVL-IDLDACVFCG 78

Query: 108 LCQEACPVDAIVEG 121
           +C   CPV+A    
Sbjct: 79  MCANFCPVNAYRFT 92



 Score = 34.7 bits (78), Expect = 4.3,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 22/65 (33%), Gaps = 3/65 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +ERCI C  C  +CP +A+ +           R      D    + C  C   CP D  
Sbjct: 234 DQERCIGCGRCAIVCPYEAMDVIRPFEGEIRLVRDRLAKCDP---VGCHGCFNVCPADCW 290

Query: 119 VEGPN 123
                
Sbjct: 291 YVDDQ 295



 Score = 34.3 bits (77), Expect = 5.2,   Method: Composition-based stats.
 Identities = 13/32 (40%), Positives = 15/32 (46%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
           D D   C  C +C   CP  A+  GP  E AT
Sbjct: 29  DYDYKICNGCAICVSLCPTKALQSGPILEIAT 60


>gi|320450384|ref|YP_004202480.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Thermus
           scotoductus SA-01]
 gi|320150553|gb|ADW21931.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Thermus
           scotoductus SA-01]
          Length = 1167

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 23/82 (28%), Gaps = 16/82 (19%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQ------------AITIESGPRCHDGTRRTV- 94
           RG        +  + C+ C  C  +CP              A   E  P      +    
Sbjct: 672 RGIAEFIPTWD-PQVCVQCGKCVLVCPHAVIRAKVVPEEALAQAPEGFPHRKAMWKELTG 730

Query: 95  --RYDIDMIKCIYCGLCQEACP 114
                I    C  C LC E CP
Sbjct: 731 EFTLAISPGDCTGCSLCVEVCP 752


>gi|268324765|emb|CBH38353.1| conserved hypothetical protein, 4Fe-4S binding domain family
           [uncultured archaeon]
          Length = 895

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 6/70 (8%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM------IKCIYCGLCQEA 112
            E+ C+ C +C  +CP +AI +                            CI CG C   
Sbjct: 812 DEQICVGCGVCVDVCPVEAIELTEELVPVVTFGVATVISGMKKVAKVGDGCIGCGSCASY 871

Query: 113 CPVDAIVEGP 122
           CP  A+    
Sbjct: 872 CPSGAMSLKH 881



 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 22/55 (40%)

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           C A+  A A         +      V   +D   C+ CG+C + CPV+AI     
Sbjct: 782 CMAMSTAAASRACVLLAKNSLETPAVTSVVDEQICVGCGVCVDVCPVEAIELTEE 836


>gi|262372076|ref|ZP_06065355.1| electron transport complex protein [Acinetobacter junii SH205]
 gi|262312101|gb|EEY93186.1| electron transport complex protein [Acinetobacter junii SH205]
          Length = 266

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 27/75 (36%), Gaps = 10/75 (13%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G     +    E+ CI C  C + CP  AI               + + I    C  C L
Sbjct: 81  GRPQQMKAIIREDECIGCTKCISACPVDAIIGSGK----------LMHTILTDLCTGCEL 130

Query: 109 CQEACPVDAIVEGPN 123
           C   CPVD I   P+
Sbjct: 131 CIPPCPVDCIDLVPD 145


>gi|224371980|ref|YP_002606146.1| PflC2 [Desulfobacterium autotrophicum HRM2]
 gi|223694699|gb|ACN17982.1| PflC2 [Desulfobacterium autotrophicum HRM2]
          Length = 302

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 13/84 (15%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
              + CI C  C A CP QA+ +       D           ++KCI CG C E CP +A
Sbjct: 52  YNGQSCIGCGECVAACPEQALELNENGVARD-----------LVKCINCGHCAEICPANA 100

Query: 118 IVEGPNFEFATETRQELYYDKERL 141
           + +      +T++  E+   K+RL
Sbjct: 101 MEKTGRCH-STDSLMEMI-KKDRL 122



 Score = 37.0 bits (84), Expect = 0.83,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 15/50 (30%)

Query: 74  PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                         +G     R   +   CI CG C  ACP  A+    N
Sbjct: 28  MNGCPLSCPWCHNPEGLSLESRVTYNGQSCIGCGECVAACPEQALELNEN 77


>gi|198276949|ref|ZP_03209480.1| hypothetical protein BACPLE_03154 [Bacteroides plebeius DSM 17135]
 gi|198270474|gb|EDY94744.1| hypothetical protein BACPLE_03154 [Bacteroides plebeius DSM 17135]
          Length = 293

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 10/73 (13%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
            H + +    +  CI CK C  ICP+   T++                ++   CI CG C
Sbjct: 6   FHTMAQIHINQNTCIRCKKCVRICPSALFTLQEDKGIE----------VNTDDCISCGHC 55

Query: 110 QEACPVDAIVEGP 122
              CP ++I    
Sbjct: 56  VAVCPTNSIEHAD 68


>gi|116235064|dbj|BAF34981.1| trichloroethene reductive dehalogenase [uncultured Dehalococcoides
           sp.]
          Length = 554

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 3/60 (5%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID---MIKCIYCGLCQEACPVD 116
            E C  C +C   CP QAI+ E              Y+       KCI C  C+  CP  
Sbjct: 434 REFCKTCGICAEHCPTQAISHEGPRYDSPYWDCVSGYEGWHLDYHKCINCTNCEAFCPFF 493



 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 103 CIYCGLCQEACPVDAI-VEGPNFE 125
           C  CG+C E CP  AI  EGP ++
Sbjct: 437 CKTCGICAEHCPTQAISHEGPRYD 460


>gi|310828874|ref|YP_003961231.1| hypothetical protein ELI_3306 [Eubacterium limosum KIST612]
 gi|308740608|gb|ADO38268.1| hypothetical protein ELI_3306 [Eubacterium limosum KIST612]
          Length = 1168

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/99 (17%), Positives = 31/99 (31%), Gaps = 10/99 (10%)

Query: 25  RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI---CPAQAITIE 81
           + + +       P E+ +T       +   +      RC+ C   +         A   +
Sbjct: 527 KKYKRPPMAHLSPEERKNTFEEIVKGYTPEQAREEASRCLECGCHDYFECKLVDYANQYD 586

Query: 82  SGPRCHDGTRRTVRYDI-------DMIKCIYCGLCQEAC 113
             P    G    + ++        +  KCI CG C  AC
Sbjct: 587 VAPERFSGENEELIFEDDHPFIVRNPNKCILCGRCVRAC 625



 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 19/65 (29%), Gaps = 3/65 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY---DIDMIKCIYCGLCQEACPV 115
              +CI C  C   C         G          V      +    CI CG C   CP 
Sbjct: 611 NPNKCILCGRCVRACDEVVGVTALGLMNRGFDTVVVPALGGKLADSGCISCGTCISVCPT 670

Query: 116 DAIVE 120
            A+ E
Sbjct: 671 GALGE 675


>gi|282163287|ref|YP_003355672.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Methanocella
           paludicola SANAE]
 gi|282155601|dbj|BAI60689.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Methanocella
           paludicola SANAE]
          Length = 138

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 24/69 (34%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
              +    CI C  C   CP  A   +              Y +D  KC  CG C EACP
Sbjct: 43  PDEHRLRICIQCGRCADACPMDAFYQDFNILTTSEQ---GIYRLDESKCTGCGECIEACP 99

Query: 115 VDAIVEGPN 123
              +   P+
Sbjct: 100 TKVLQFYPD 108



 Score = 38.2 bits (87), Expect = 0.39,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 32/78 (41%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           + R    E+ CI C  CE IC      + +  +           +  +  CI CG C +A
Sbjct: 1   MPRLTKNEDVCITCHRCETICAWVHEVVFNPDKGRVIVDLDYPDEHRLRICIQCGRCADA 60

Query: 113 CPVDAIVEGPNFEFATET 130
           CP+DA  +  N    +E 
Sbjct: 61  CPMDAFYQDFNILTTSEQ 78


>gi|268678836|ref|YP_003303267.1| cobyrinic acid ac-diamide synthase [Sulfurospirillum deleyianum DSM
           6946]
 gi|268616867|gb|ACZ11232.1| Cobyrinic acid ac-diamide synthase [Sulfurospirillum deleyianum DSM
           6946]
          Length = 292

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/110 (23%), Positives = 42/110 (38%), Gaps = 19/110 (17%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               E C  C  C  +C   AI +E+G           RY +D + C  CG C++ C ++
Sbjct: 63  HIDPETCRNCGRCAKVCRFDAIVLENG-----------RYVVDELSCEGCGYCEKVCRLN 111

Query: 117 AIVEGPNFEFATETRQ-----ELYYDKERLLNNGDRWESEIVRNIVTDSP 161
           AI        A  T Q     ++ + K   L  G     ++V  +  +  
Sbjct: 112 AISMNERLAGAWFTSQTKYGSDMVHAK---LGIGAENSGKLVAKVKKEGK 158


>gi|262402292|ref|ZP_06078853.1| formate dehydrogenase-O major subunit [Vibrio sp. RC586]
 gi|262351074|gb|EEZ00207.1| formate dehydrogenase-O major subunit [Vibrio sp. RC586]
          Length = 1396

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 11/71 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM-----------IKCIYCG 107
              RCI+C  C   C  Q++         +  R  VR D               +C+ CG
Sbjct: 631 DANRCISCGQCIQACREQSVQGVLSFMQTEKGRPVVRPDCRPNFGGQGVSMGDSRCVQCG 690

Query: 108 LCQEACPVDAI 118
            C +ACPV A+
Sbjct: 691 ACVQACPVGAM 701



 Score = 38.9 bits (89), Expect = 0.21,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 26/74 (35%), Gaps = 5/74 (6%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           +    P  R     +    G+ RC+ C  C   CP  A+T          T  T    I 
Sbjct: 663 RPVVRPDCRPNFGGQGVSMGDSRCVQCGACVQACPVGAMTDARDKSQGRDTPLTKVETI- 721

Query: 100 MIKCIYCGL-CQEA 112
              C YCG+ C+  
Sbjct: 722 ---CTYCGVGCKLV 732


>gi|261867803|ref|YP_003255725.1| electron transport complex protein RnfC [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413135|gb|ACX82506.1| electron transport complex protein RnfC [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 745

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 13/111 (11%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
             E+ CI C  C   CP + +  +               +  +  CI CG+C   CP   
Sbjct: 373 EEEKNCIRCSACSDACPVK-LMPQQLYWFARSEDHEKSEEYSLKDCIECGVCAYVCPSH- 430

Query: 118 IVEGPNFEFATETRQEL----YYDKERL-LNNGDRWESEIVRNIVTDSPYR 163
           I     F      R++        K +L      R+E    R +  +   R
Sbjct: 431 IPLIQYF-----RREKAKIWEIKHKAKLAEEAKIRFEQRQAR-LEREEQER 475


>gi|271502701|ref|YP_003335727.1| glutamate synthase small subunit [Dickeya dadantii Ech586]
 gi|270346256|gb|ACZ79021.1| glutamate synthase, small subunit [Dickeya dadantii Ech586]
          Length = 667

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 31/86 (36%), Gaps = 15/86 (17%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRR 92
            YP  +    PR R  H  +   +    C  C    C  +CP QA+            R+
Sbjct: 30  RYPENREDFHPRIRVYH--QGDQHTAVTCRHCEDSPCAKVCPTQALV-----------RK 76

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAI 118
                +   KCI C  C  ACP  AI
Sbjct: 77  QDGIQLIAEKCIGCKTCVLACPFGAI 102



 Score = 41.6 bits (96), Expect = 0.034,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 11/75 (14%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC---GLCQEACPVDA 117
           E+CI CK C   CP  AI++E+  +     +           CI       C EACP  A
Sbjct: 85  EKCIGCKTCVLACPFGAISVENQAQGASAHK--------CDLCIGRPEGQACVEACPTQA 136

Query: 118 IVEGPNFEFATETRQ 132
           +          + R+
Sbjct: 137 LHLVSERSLEEQRRE 151



 Score = 38.5 bits (88), Expect = 0.30,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 20/66 (30%), Gaps = 6/66 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY----DIDMIKCIYCGL--CQEA 112
             + CI C  CE  C              D   R   Y        + C +C    C + 
Sbjct: 8   NAKDCIGCNACEIACVISHNHGRYPENREDFHPRIRVYHQGDQHTAVTCRHCEDSPCAKV 67

Query: 113 CPVDAI 118
           CP  A+
Sbjct: 68  CPTQAL 73


>gi|227874128|ref|ZP_03992334.1| iron-sulfur-binding membrane protein [Oribacterium sinus F0268]
 gi|227840040|gb|EEJ50464.1| iron-sulfur-binding membrane protein [Oribacterium sinus F0268]
          Length = 307

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 15/69 (21%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
             RY    ++CI C  C+A+C  Q                    + + ++CI CG C+ A
Sbjct: 240 FFRYTLDHQKCIHCGRCKAVCEMQCD---------------PVQNCNDLECIRCGKCKNA 284

Query: 113 CPVDAIVEG 121
           CPVDAI  G
Sbjct: 285 CPVDAIACG 293


>gi|239624920|ref|ZP_04667951.1| dihydroorotate dehydrogenase [Clostridiales bacterium 1_7_47_FAA]
 gi|239521306|gb|EEQ61172.1| dihydroorotate dehydrogenase [Clostridiales bacterium 1_7_47FAA]
          Length = 362

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/106 (25%), Positives = 35/106 (33%), Gaps = 19/106 (17%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           L+E   A     RY F +   +     K            +       E C  C LCE  
Sbjct: 271 LEELSKALG---RYGFSSVEDVKACGLKKEDPSLTPSYPVI-----DREACTGCGLCERN 322

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           CP  A+ +                 +D  KC  CGLC+  CP  AI
Sbjct: 323 CPYFALEMRDKKPF-----------VDNDKCFGCGLCESRCPAQAI 357



 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 12/25 (48%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           ID   C  CGLC+  CP  A+    
Sbjct: 308 IDREACTGCGLCERNCPYFALEMRD 332


>gi|224368797|ref|YP_002602958.1| FdhA6 [Desulfobacterium autotrophicum HRM2]
 gi|223691513|gb|ACN14796.1| FdhA6 [Desulfobacterium autotrophicum HRM2]
          Length = 921

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 24/85 (28%), Gaps = 7/85 (8%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC---PAQAITIESGPRCHDGTRRT 93
           P  K            +R       RCI C  C   C                       
Sbjct: 151 PQSKSKYPMERVNPFIIR----DFSRCILCGRCVQACREIQVNNAIDFGYRGADTKIIAG 206

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAI 118
               +    C++CG C +ACPV A+
Sbjct: 207 ADVALKDSDCVFCGECVDACPVGAL 231


>gi|332652331|ref|ZP_08418076.1| protein HymB [Ruminococcaceae bacterium D16]
 gi|332517477|gb|EGJ47080.1| protein HymB [Ruminococcaceae bacterium D16]
          Length = 626

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 26/76 (34%), Gaps = 10/76 (13%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
                    +      E C  C  C   CP  AI+ +            + + ID  KCI
Sbjct: 560 HCPHCNGRKKELQIDPELCKGCGKCMKQCPMDAISGQ----------IRMPHVIDTEKCI 609

Query: 105 YCGLCQEACPVDAIVE 120
            CG C   CP  AI E
Sbjct: 610 KCGACWGCCPFGAIRE 625



 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 15/39 (38%)

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                 C     R     ID   C  CG C + CP+DAI
Sbjct: 555 HVVDKHCPHCNGRKKELQIDPELCKGCGKCMKQCPMDAI 593


>gi|328474563|gb|EGF45368.1| electron transport complex protein RnfC [Vibrio parahaemolyticus
           10329]
          Length = 907

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 13/107 (12%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            CI C  C   CPA  +  +               ++++  CI CG C   CP   I   
Sbjct: 377 ECIRCGQCAEACPAS-LLPQQLQWHAKAEEYDKLEELNLKDCIECGACAFVCP-SEIPLV 434

Query: 122 PNF-----EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
             +     E  T T++    ++ +L     R+E +  R +  +   R
Sbjct: 435 QYYRQAKAEIRTRTQEAEAAERAKL-----RFEEKKAR-MEREKAER 475



 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 19/43 (44%)

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           +  +Q    ++       TR  +      ++CI CG C EACP
Sbjct: 347 LPHSQVPITKTANCILAPTRHEISAHQYEMECIRCGQCAEACP 389


>gi|298387520|ref|ZP_06997072.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides sp.
           1_1_14]
 gi|298259727|gb|EFI02599.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides sp.
           1_1_14]
          Length = 1185

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 28/81 (34%), Gaps = 15/81 (18%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG  A     N  E CI C  C  +CP                A   +           T
Sbjct: 676 RGVAAFVPEWN-AENCIQCNKCAYVCPHASIRPFVLDAEEQKGAKFEQLKAVGKAFDGMT 734

Query: 94  VRYDIDMIKCIYCGLCQEACP 114
            R  +D++ C+ CG C + CP
Sbjct: 735 FRIQVDVLDCLGCGNCADICP 755


>gi|239908986|ref|YP_002955728.1| putative Fe hydrogenase [Desulfovibrio magneticus RS-1]
 gi|239798853|dbj|BAH77842.1| putative Fe hydrogenase [Desulfovibrio magneticus RS-1]
          Length = 475

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 27/75 (36%), Gaps = 11/75 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C  C+ C  +CP  A+T   G              ID  +C+ CG C + C   A 
Sbjct: 18  DPNLCTGCRRCAEVCPVGAVTGPQGQAQ----------TIDAERCVLCGQCVQVCCAFAA 67

Query: 119 VEG-PNFEFATETRQ 132
               P  + A   RQ
Sbjct: 68  PFDEPAHDPAAIRRQ 82



 Score = 37.0 bits (84), Expect = 0.90,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 12/34 (35%)

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           R            ID   C  C  C E CPV A+
Sbjct: 4   RPVIAPGVAPVIAIDPNLCTGCRRCAEVCPVGAV 37


>gi|225572307|ref|ZP_03781171.1| hypothetical protein RUMHYD_00601 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040189|gb|EEG50435.1| hypothetical protein RUMHYD_00601 [Blautia hydrogenotrophica DSM
           10507]
          Length = 587

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 5/69 (7%)

Query: 59  GEERCIACKLCEAICP--AQAITIESGPRCHDGTRR---TVRYDIDMIKCIYCGLCQEAC 113
             ++CIAC  C  +C    +    E       G R        ++    CI CG C + C
Sbjct: 154 DMDKCIACGRCVTVCEEVQKIGIYEMKCNEETGERYVNTKKDVNLSATACINCGQCVKVC 213

Query: 114 PVDAIVEGP 122
           PV A+ E  
Sbjct: 214 PVAALTEKD 222


>gi|224539806|ref|ZP_03680345.1| hypothetical protein BACCELL_04716 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518552|gb|EEF87657.1| hypothetical protein BACCELL_04716 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 373

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 10/65 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E CI C +C   C   A+ + +G +            ID  KC+ CG C   C  D  
Sbjct: 192 DTESCIGCNICVKHCAHDAVHLNAGHKAE----------IDYAKCVGCGQCVALCQYDGA 241

Query: 119 VEGPN 123
           + G  
Sbjct: 242 IMGDE 246


>gi|194289439|ref|YP_002005346.1| benzoyl-CoA oxygenase component a [Cupriavidus taiwanensis LMG
           19424]
 gi|193223274|emb|CAQ69279.1| Benzoyl-CoA oxygenase component A [Cupriavidus taiwanensis LMG
           19424]
          Length = 414

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 11/67 (16%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            ++++    E CI C  CE  CP  AIT +              Y +    C  C  C  
Sbjct: 6   IIKQHLIDPEICIRCNTCEDTCPIDAITHDD-----------RNYVVRADVCNGCNACLS 54

Query: 112 ACPVDAI 118
            CP  AI
Sbjct: 55  PCPTGAI 61



 Score = 34.3 bits (77), Expect = 5.2,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           ID   CI C  C++ CP+DAI    
Sbjct: 12  IDPEICIRCNTCEDTCPIDAITHDD 36


>gi|169830370|ref|YP_001716352.1| hydrogenase, Fe-only [Candidatus Desulforudis audaxviator MP104C]
 gi|169637214|gb|ACA58720.1| hydrogenase, Fe-only [Candidatus Desulforudis audaxviator MP104C]
          Length = 580

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 30/93 (32%), Gaps = 7/93 (7%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93
           + +P  +            +R       +CI C+ C  +C           +  DG    
Sbjct: 124 VRFPRTQPVYPVDDSSVAIIR----DPNKCILCRRCVTVCQQVQSVSAIEFKKVDGEAVV 179

Query: 94  V---RYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
               R  +    C+ CG C   CPV AI E   
Sbjct: 180 APVLRAPLAETNCVNCGQCILVCPVGAIYERDE 212


>gi|17555800|ref|NP_499717.1| ABC transporter, class E family member (abce-1) [Caenorhabditis
           elegans]
 gi|5824775|emb|CAB54424.1| C. elegans protein Y39E4B.1, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 610

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 30/83 (36%), Gaps = 1/83 (1%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           KG        +  LR     ++RC   K C   C         G +C      +    I 
Sbjct: 4   KGPLIKNNETDVPLRIAIVEKDRCKP-KNCGLACKRACPVNRQGKQCIVVEATSTISQIS 62

Query: 100 MIKCIYCGLCQEACPVDAIVEGP 122
            I CI CG+C + CP DAI    
Sbjct: 63  EILCIGCGICVKKCPYDAIKIIN 85


>gi|29347157|ref|NP_810660.1| pyruvate-flavodoxin oxidoreductase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253571894|ref|ZP_04849299.1| pyruvate-flavodoxin oxidoreductase [Bacteroides sp. 1_1_6]
 gi|29339056|gb|AAO76854.1| pyruvate-flavodoxin oxidoreductase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251838491|gb|EES66577.1| pyruvate-flavodoxin oxidoreductase [Bacteroides sp. 1_1_6]
          Length = 1185

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 28/81 (34%), Gaps = 15/81 (18%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG  A     N  E CI C  C  +CP                A   +           T
Sbjct: 676 RGVAAFVPEWN-AENCIQCNKCAYVCPHASIRPFVLDAEEQKGAKFEQLKAVGKAFDGMT 734

Query: 94  VRYDIDMIKCIYCGLCQEACP 114
            R  +D++ C+ CG C + CP
Sbjct: 735 FRIQVDVLDCLGCGNCADICP 755


>gi|113969169|ref|YP_732962.1| formate dehydrogenase subunit alpha [Shewanella sp. MR-4]
 gi|113883853|gb|ABI37905.1| formate dehydrogenase, alpha subunit [Shewanella sp. MR-4]
          Length = 1432

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 22/75 (29%), Gaps = 15/75 (20%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK---------------C 103
              RCI+C  C  +C  Q+                      M +               C
Sbjct: 651 DANRCISCGKCVDVCQQQSGHCAIQFSQDSYQALPQEMTQHMERRAPRVGFSASMADSLC 710

Query: 104 IYCGLCQEACPVDAI 118
           + CG C + CP  A+
Sbjct: 711 VQCGNCVQVCPTGAL 725


>gi|117921736|ref|YP_870928.1| formate dehydrogenase subunit alpha [Shewanella sp. ANA-3]
 gi|117614068|gb|ABK49522.1| formate dehydrogenase, alpha subunit [Shewanella sp. ANA-3]
          Length = 1432

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 22/75 (29%), Gaps = 15/75 (20%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK---------------C 103
              RCI+C  C  +C  Q+                      M +               C
Sbjct: 651 DANRCISCGKCVDVCQQQSGHCAIQFSQDSYQALPQEMTQHMERRAPRVGFSASMADSHC 710

Query: 104 IYCGLCQEACPVDAI 118
           + CG C + CP  A+
Sbjct: 711 VQCGNCVQVCPTGAL 725



 Score = 35.5 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 4/48 (8%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
             C+ C  C  +CP  A+      R  D T       I    C YCG+
Sbjct: 708 SHCVQCGNCVQVCPTGALVDARDKRQGDCTELKTASTI----CTYCGV 751


>gi|109899273|ref|YP_662528.1| electron transport complex protein RnfB [Pseudoalteromonas
           atlantica T6c]
 gi|109701554|gb|ABG41474.1| electron transport complex, RnfABCDGE type, B subunit
           [Pseudoalteromonas atlantica T6c]
          Length = 188

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 10/62 (16%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C   CP  AI   +             + +   +C  C LC + CPVD I  
Sbjct: 116 DECIGCTKCIQACPVDAILGAAKQ----------MHTVISDECTGCDLCVDPCPVDCIDM 165

Query: 121 GP 122
            P
Sbjct: 166 IP 167



 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           I   +CI C  C +ACPVDAI
Sbjct: 113 IREDECIGCTKCIQACPVDAI 133


>gi|116748614|ref|YP_845301.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Syntrophobacter fumaroxidans MPOB]
 gi|116697678|gb|ABK16866.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Syntrophobacter fumaroxidans MPOB]
          Length = 990

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 19/59 (32%), Gaps = 6/59 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
            +  C  C  C  +CP         P+  +         I    C  CG C  ACP  A
Sbjct: 917 DQTMCRGCGKCVDVCPYG------SPQLVEVGEGVFVSQIQEALCKGCGACAVACPTGA 969



 Score = 42.4 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 27/110 (24%), Positives = 35/110 (31%), Gaps = 28/110 (25%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPA---QAITIESGPRCHDGTRRTVR----YDI 98
            F  E   +      ++CI+C  C   CP     A     G R              Y I
Sbjct: 15  NFHAEVLQKPRYVDLDKCISCGACAGKCPTVVIDAFNAGLGKRKAIYKYYAQAIPSGYAI 74

Query: 99  DMIKC------IYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLL 142
           D   C        CG+C + CP DA+  G                KE+LL
Sbjct: 75  DAENCRQLGHGKKCGICAKVCPADAVDYGQ---------------KEKLL 109


>gi|255525714|ref|ZP_05392646.1| hydrogenase large subunit domain protein [Clostridium
           carboxidivorans P7]
 gi|255510616|gb|EET86924.1| hydrogenase large subunit domain protein [Clostridium
           carboxidivorans P7]
          Length = 458

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 32/106 (30%), Gaps = 22/106 (20%)

Query: 35  NYPFEKGSTSPRFRGEHALRRY---------------PNGEERCIACKLCEAICPAQAIT 79
             P +K + +   RG    +                    +E C  C +C   CP  AI 
Sbjct: 61  KCPIDKYTVTDACRGCIQHKCMEVCPANAITRVAGSAYINQELCKECGMCRKSCPYGAIA 120

Query: 80  IESGPRCHDGTR-------RTVRYDIDMIKCIYCGLCQEACPVDAI 118
               P                    I+  +CI CG C  ACP  AI
Sbjct: 121 EVMRPCKRVCPTGALEINSDNKMAMIEKEECINCGACMAACPFGAI 166


>gi|220904426|ref|YP_002479738.1| ferredoxin-dependent glutamate synthase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219868725|gb|ACL49060.1| ferredoxin-dependent glutamate synthase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 541

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 14/93 (15%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR------------RTVRYDIDMI 101
            +     + C  C  C A C   AI      R     +               +      
Sbjct: 16  WKIDYRPDLCTRCGSCVAACTFAAIEPSRVRRHIQSHKTLDSAQEYAVPLVIKQKTSISH 75

Query: 102 KCIYCGLCQEACPVDAIVEGPNFE--FATETRQ 132
            C+ CG+C+++CP  AI    N +  FA   R+
Sbjct: 76  ACVGCGMCEKSCPTGAIRPVRNMDQRFALLARE 108



 Score = 34.7 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 10/26 (38%)

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAI 118
             + D     C  CG C  AC   AI
Sbjct: 15  CWKIDYRPDLCTRCGSCVAACTFAAI 40


>gi|227828960|ref|YP_002830740.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.14.25]
 gi|227831698|ref|YP_002833478.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus L.S.2.15]
 gi|229580655|ref|YP_002839055.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus Y.G.57.14]
 gi|229583508|ref|YP_002841907.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus Y.N.15.51]
 gi|229586167|ref|YP_002844669.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.16.27]
 gi|238621152|ref|YP_002915978.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.16.4]
 gi|284999255|ref|YP_003421023.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Sulfolobus
           islandicus L.D.8.5]
 gi|227458146|gb|ACP36833.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus L.S.2.15]
 gi|227460756|gb|ACP39442.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.14.25]
 gi|228011371|gb|ACP47133.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus Y.G.57.14]
 gi|228014224|gb|ACP49985.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus Y.N.15.51]
 gi|228021217|gb|ACP56624.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.16.27]
 gi|238382222|gb|ACR43310.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.16.4]
 gi|284447151|gb|ADB88653.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Sulfolobus
           islandicus L.D.8.5]
 gi|323476069|gb|ADX86675.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus REY15A]
 gi|323478792|gb|ADX84030.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus HVE10/4]
          Length = 104

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + CIA   C   CP         P      ++     ++   CI+C  C   CPV AI
Sbjct: 42  DFDLCIADGSCINACPVNVFQWYDTPGHPASEKKADP--VNEQACIFCMACVNVCPVAAI 99

Query: 119 VEGP 122
              P
Sbjct: 100 DVKP 103


>gi|150400069|ref|YP_001323836.1| thiamine pyrophosphate binding domain-containing protein
           [Methanococcus vannielii SB]
 gi|150012772|gb|ABR55224.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Methanococcus vannielii SB]
          Length = 615

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 13/69 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA- 117
             E+C  CK+C       AI ++                     CI CGLC   CP +A 
Sbjct: 559 DTEKCTGCKICFEELGCPAIVMDRDIPN------------ITSNCIACGLCVAVCPFNAI 606

Query: 118 IVEGPNFEF 126
           I EG  +E 
Sbjct: 607 INEGNCYEL 615


>gi|13542329|ref|NP_112017.1| putative ATPase RIL [Thermoplasma volcanium GSS1]
          Length = 589

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 1/62 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++RC   K C   C      + +     D      +  I    CI CG+C   CP  AI
Sbjct: 7   DKDRCHP-KKCHHECQYYCPPVRNHVMAIDFPDPDGQPLISETLCIGCGICIRRCPFGAI 65

Query: 119 VE 120
             
Sbjct: 66  RI 67


>gi|14325764|dbj|BAB60667.1| RNase L inhibitor [Thermoplasma volcanium GSS1]
          Length = 592

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 1/62 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++RC   K C   C      + +     D      +  I    CI CG+C   CP  AI
Sbjct: 10  DKDRCHP-KKCHHECQYYCPPVRNHVMAIDFPDPDGQPLISETLCIGCGICIRRCPFGAI 68

Query: 119 VE 120
             
Sbjct: 69  RI 70


>gi|167038500|ref|YP_001666078.1| RnfABCDGE type electron transport complex subunit B
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|167038757|ref|YP_001661742.1| RnfABCDGE type electron transport complex subunit B
           [Thermoanaerobacter sp. X514]
 gi|256751369|ref|ZP_05492248.1| electron transport complex, RnfABCDGE type, B subunit
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300913657|ref|ZP_07130974.1| electron transport complex, RnfABCDGE type, B subunit
           [Thermoanaerobacter sp. X561]
 gi|307723328|ref|YP_003903079.1| RnfABCDGE type electron transport complex subunit B
           [Thermoanaerobacter sp. X513]
 gi|320116895|ref|YP_004187054.1| RnfABCDGE type electron transport complex subunit B
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166852997|gb|ABY91406.1| electron transport complex, RnfABCDGE type, B subunit
           [Thermoanaerobacter sp. X514]
 gi|166857334|gb|ABY95742.1| electron transport complex, RnfABCDGE type, B subunit
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|256749751|gb|EEU62776.1| electron transport complex, RnfABCDGE type, B subunit
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300890342|gb|EFK85487.1| electron transport complex, RnfABCDGE type, B subunit
           [Thermoanaerobacter sp. X561]
 gi|307580389|gb|ADN53788.1| electron transport complex, RnfABCDGE type, B subunit
           [Thermoanaerobacter sp. X513]
 gi|319929986|gb|ADV80671.1| electron transport complex, RnfABCDGE type, B subunit
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 271

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 31/90 (34%), Gaps = 11/90 (12%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
                  P+++         +       N    CI C++C   CP  AIT E+       
Sbjct: 182 KGIIELVPYDQEVIIKCKSNDPGKVVRSNCSVGCIGCQICVKSCPENAITFENYLA---- 237

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
                   I+  KC  CG+C E CP   I 
Sbjct: 238 -------KINYEKCTNCGICAEKCPTGTIF 260



 Score = 40.9 bits (94), Expect = 0.055,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 11/66 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            +    C+ C  C  +C   AI I +G              ID  KC+ C  C E CP  
Sbjct: 135 KSCSYGCLGCGTCVDVCDYGAIQIINGVAV-----------IDKEKCVACKACIEVCPKG 183

Query: 117 AIVEGP 122
            I   P
Sbjct: 184 IIELVP 189



 Score = 38.2 bits (87), Expect = 0.36,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCIYCGLCQEAC 113
            +E+C+ACK C  +CP   I +    +      +      V      + CI C +C ++C
Sbjct: 166 DKEKCVACKACIEVCPKGIIELVPYDQEVIIKCKSNDPGKVVRSNCSVGCIGCQICVKSC 225

Query: 114 PVDAIVEGP 122
           P +AI    
Sbjct: 226 PENAITFEN 234


>gi|331083159|ref|ZP_08332275.1| hypothetical protein HMPREF0992_01199 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|330404548|gb|EGG84088.1| hypothetical protein HMPREF0992_01199 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 449

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 36/105 (34%), Gaps = 8/105 (7%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E    +    G   L      E+ CI C  CE++CPA  +        +      +   +
Sbjct: 348 ELFYVTKNTSGILVLPDSQYEEQPCIRCAGCESVCPAG-LVPYQIEFAYLEEDYDLCESL 406

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLN 143
              +CI CG C   CP          E +  TR      K+R+  
Sbjct: 407 YASECIACGCCSYICPAKR-------ELSVRTRMARDMVKQRMRE 444


>gi|332161708|ref|YP_004298285.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|318605796|emb|CBY27294.1| pyruvate-flavodoxin oxidoreductase [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325665938|gb|ADZ42582.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
          Length = 1177

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A        + C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSAFPPDGTWPVGTTQWEKRNIAEDIPIWQPDLCTQCNHCVAAC 699

Query: 74  PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           P  A                   ++E   R   G +      +    C  C LC E CP 
Sbjct: 700 PHSAIRAKVIQPEAMSGAPDSLQSLEVKARDMRGQKY--VLQVAPEDCTGCNLCYEVCPA 757

Query: 116 --------DAIVEGPNFEFATETR 131
                    AI   P  E   E +
Sbjct: 758 KDRQNPEIKAINMKPRLEHLVEEK 781


>gi|319790365|ref|YP_004151998.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Thermovibrio ammonificans HB-1]
 gi|317114867|gb|ADU97357.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Thermovibrio ammonificans HB-1]
          Length = 98

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/92 (27%), Positives = 35/92 (38%), Gaps = 10/92 (10%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E GS+     GE    R    +++C+ C LC   CP   I ++                I
Sbjct: 17  EPGSSEKYNTGEWRAWRPVFEQDKCVNCMLCWVFCPDSCILVKEEKMVG----------I 66

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
           D   C  CG+C   CP  A+   P + F  E 
Sbjct: 67  DYDHCKGCGICAFECPTKALEMKPEYLFREED 98


>gi|317152026|ref|YP_004120074.1| hydrogenase, Fe-only [Desulfovibrio aespoeensis Aspo-2]
 gi|317152315|ref|YP_004120363.1| hydrogenase, Fe-only [Desulfovibrio aespoeensis Aspo-2]
 gi|316942277|gb|ADU61328.1| hydrogenase, Fe-only [Desulfovibrio aespoeensis Aspo-2]
 gi|316942566|gb|ADU61617.1| hydrogenase, Fe-only [Desulfovibrio aespoeensis Aspo-2]
          Length = 446

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 8/69 (11%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +        +C AC  CEA+C   AI   +           +R  +D   CI CG C   
Sbjct: 49  IYFVQVDATKCEACGECEAVCATGAIQPINDD--------GIRAVVDPAACINCGQCLTH 100

Query: 113 CPVDAIVEG 121
           CP  AI EG
Sbjct: 101 CPYGAIYEG 109


>gi|294643334|ref|ZP_06721156.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides ovatus
           SD CC 2a]
 gi|292641321|gb|EFF59517.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides ovatus
           SD CC 2a]
          Length = 868

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 28/81 (34%), Gaps = 15/81 (18%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG  A     N  E CI C  C  +CP                A   +           T
Sbjct: 362 RGVAAFVPEWN-AENCIQCNKCAYVCPHASIRPFVLDAEEQKGAKFEQLKAVGKAFDGMT 420

Query: 94  VRYDIDMIKCIYCGLCQEACP 114
            R  +D++ C+ CG C + CP
Sbjct: 421 FRIQVDVLDCLGCGNCADICP 441


>gi|255657073|ref|ZP_05402482.1| putative nitroreductase [Clostridium difficile QCD-23m63]
          Length = 258

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 31/84 (36%), Gaps = 11/84 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +E CI C LC+  CP   I IE+               I    C+ CG C   CP  AI
Sbjct: 10  DKELCIGCGLCKNDCPVNNIIIENKKSV-----------IKKQDCLMCGHCAAICPQKAI 58

Query: 119 VEGPNFEFATETRQELYYDKERLL 142
                 E   E   +   D + LL
Sbjct: 59  TLTGFDEPPIELTNKPNLDSDELL 82



 Score = 35.5 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 16/33 (48%)

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            +      +D   CI CGLC+  CPV+ I+   
Sbjct: 1   MKYQHIIKVDKELCIGCGLCKNDCPVNNIIIEN 33


>gi|224369245|ref|YP_002603409.1| IorA2 [Desulfobacterium autotrophicum HRM2]
 gi|223691962|gb|ACN15245.1| IorA2 [Desulfobacterium autotrophicum HRM2]
          Length = 607

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 9/62 (14%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C  C  C +     A+ ++S            R DID+  C  CG+C   CP  +IV 
Sbjct: 555 DDCDGCGYCVSHFECPALVLDSE---------NKRVDIDLALCTGCGVCISVCPKGSIVH 605

Query: 121 GP 122
             
Sbjct: 606 VN 607


>gi|254173765|ref|ZP_04880437.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermococcus sp. AM4]
 gi|214032457|gb|EEB73287.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermococcus sp. AM4]
          Length = 635

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 29/81 (35%), Gaps = 9/81 (11%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
           P  R           E+RC  CK C  +    A+  +             +  ID + C 
Sbjct: 561 PVIRRGEIGEIPKVIEDRCTGCKACILLTGCPALVYDPETN---------KVRIDGLLCT 611

Query: 105 YCGLCQEACPVDAIVEGPNFE 125
            CG+C + CP DAI      E
Sbjct: 612 GCGVCNQTCPFDAIKFPSELE 632


>gi|172037232|ref|YP_001803733.1| bidirectional hydrogenase complex protein HoxU [Cyanothece sp. ATCC
           51142]
 gi|171698686|gb|ACB51667.1| hydrogenase chain U [Cyanothece sp. ATCC 51142]
          Length = 238

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 26/89 (29%), Gaps = 12/89 (13%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRR 92
            +P  K   S    G            RCI C  C  +C     A   +   R       
Sbjct: 128 QFPQRKVDLSHPQFGM--------DHNRCILCTRCVRVCDEIEGAHVWDVASRGGQSFIV 179

Query: 93  TVRYDIDMI--KCIYCGLCQEACPVDAIV 119
           +           C  CG C +ACP  AI 
Sbjct: 180 SGINQPWGDVNACTSCGKCVDACPTGAIF 208


>gi|154498762|ref|ZP_02037140.1| hypothetical protein BACCAP_02753 [Bacteroides capillosus ATCC
           29799]
 gi|150272152|gb|EDM99356.1| hypothetical protein BACCAP_02753 [Bacteroides capillosus ATCC
           29799]
          Length = 447

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/123 (22%), Positives = 42/123 (34%), Gaps = 31/123 (25%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +RC  C  C   CP +AI + +G              I   +CI CG+C + CP  AI
Sbjct: 11  EYKRCRGCTTCIKSCPTEAIRVRNGKAA-----------ILNARCIDCGVCIQVCPHKAI 59

Query: 119 -------VEGPNFEFATETRQELYY----DKER-------LLNNG--DRWESEIVRNIVT 158
                       F +     +   Y    + +        LL  G  D +E      +V+
Sbjct: 60  KSISDPLDMLKKFRYCVALPEPALYGQFHNMDDIDIILNGLLEIGFHDVYEVSKAAELVS 119

Query: 159 DSP 161
           D  
Sbjct: 120 DYQ 122


>gi|126664787|ref|ZP_01735771.1| iron-sulfur cluster-binding protein [Marinobacter sp. ELB17]
 gi|126631113|gb|EBA01727.1| iron-sulfur cluster-binding protein [Marinobacter sp. ELB17]
          Length = 659

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 9/69 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++C  C  C ++CP  A+                        C+ CG+C+  CP  AI
Sbjct: 511 NSDKCTLCLACVSLCPTGALGDHPD---------RPEVQFTENACVQCGVCESTCPETAI 561

Query: 119 VEGPNFEFA 127
           +  P  + +
Sbjct: 562 ILKPRLDLS 570



 Score = 42.0 bits (97), Expect = 0.030,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 11/55 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           C  C  +CP +AI                  +I+   C  CG C   CP  A+  
Sbjct: 291 CTRCLDVCPTEAIFSAGD-----------HVEINSDICAGCGSCAAVCPTSAVTM 334



 Score = 35.5 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
             A A  IE+      G       +I+  KC  C  C   CP  A+ + P+
Sbjct: 486 VAAMADRIEAPIALPAGAPYGAI-EINSDKCTLCLACVSLCPTGALGDHPD 535


>gi|88603039|ref|YP_503217.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methanospirillum hungatei
           JF-1]
 gi|88188501|gb|ABD41498.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Methanospirillum
           hungatei JF-1]
          Length = 369

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 12/81 (14%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                R +H   +    E RC+ C  C   CP  AI +                 +D   
Sbjct: 177 PPIGKRDQHQGMQAEINESRCVGCGYCVTQCPFDAIHMGKKA------------TVDKSV 224

Query: 103 CIYCGLCQEACPVDAIVEGPN 123
           C  C  C + CP  AI+    
Sbjct: 225 CYGCSACLQVCPEQAILFHWE 245



 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 4/62 (6%)

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVRY----DIDMIKCIYCGLCQEACPVDAIVE 120
             K         AI   +        +R        +I+  +C+ CG C   CP DAI  
Sbjct: 155 HVKGHALAGFGGAIKNVAMGCAPPIGKRDQHQGMQAEINESRCVGCGYCVTQCPFDAIHM 214

Query: 121 GP 122
           G 
Sbjct: 215 GK 216


>gi|52549644|gb|AAU83493.1| heterodisulfide reductase subunit A and related polyferredoxins
           [uncultured archaeon GZfos29E12]
          Length = 895

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 6/70 (8%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM------IKCIYCGLCQEA 112
            E+ C+ C +C  +CP +AI +                            CI CG C   
Sbjct: 812 DEQICVGCGVCVDVCPVEAIELTEELVPVVTFGVATVVSAMKKVAKVGDGCIGCGSCASY 871

Query: 113 CPVDAIVEGP 122
           CP  A+    
Sbjct: 872 CPSGAMSLKH 881



 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 22/55 (40%)

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           C A+  A A         +      V   +D   C+ CG+C + CPV+AI     
Sbjct: 782 CMAMSTAAASRACVLLAKNFMETPAVSAVVDEQICVGCGVCVDVCPVEAIELTEE 836


>gi|77919204|ref|YP_357019.1| NAD-reducing iron-only hydrogenase large subunit [Pelobacter
           carbinolicus DSM 2380]
 gi|77545287|gb|ABA88849.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
           [Pelobacter carbinolicus DSM 2380]
          Length = 585

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 59  GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115
             ++CI C+ CE +C   Q   I SG            +++++    C +CG C   CPV
Sbjct: 148 DMDKCILCRRCETMCNDVQTCGILSGVDRGFNAVVAPPFEMNLEDSACTFCGQCAAVCPV 207

Query: 116 DAIVEGP 122
            A+VE  
Sbjct: 208 GALVERD 214


>gi|77919184|ref|YP_356999.1| MinD family ATPase [Pelobacter carbinolicus DSM 2380]
 gi|77545267|gb|ABA88829.1| MinD superfamily P-loop ATPase [Pelobacter carbinolicus DSM 2380]
          Length = 282

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 27/109 (24%), Gaps = 18/109 (16%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEH-------ALRRYPNGEERCIACKLCEAIC 73
            + L +   +K  +     +   +  F            +      E  C  C  C   C
Sbjct: 18  SVNLAHMLGSKVQLLDCDVEEPNAHLFLQSEPKEQTVVTIPVPQINEGLCECCGECAKFC 77

Query: 74  PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
              AI                   I    C  CG C   CP  AI E  
Sbjct: 78  EYHAIVSFG-----------TTPLIFPEMCHGCGGCSIVCPKKAIGEID 115


>gi|83950971|ref|ZP_00959704.1| formate dehydrogenase, alpha subunit [Roseovarius nubinhibens ISM]
 gi|83838870|gb|EAP78166.1| formate dehydrogenase, alpha subunit [Roseovarius nubinhibens ISM]
          Length = 920

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 5/67 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI----DMIKCIYCGLCQEACP 114
             + CI C LC   C  +    +       G      +D+        C+ CG C +ACP
Sbjct: 147 NLDACIQCGLCVRACR-EVQVNDVIGMAGRGHDAYPTFDMADPMGASTCVACGECVQACP 205

Query: 115 VDAIVEG 121
             A++  
Sbjct: 206 TGALMPS 212


>gi|323247769|gb|EGA31709.1| electron transport complex protein RnfC [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
          Length = 447

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           P  E+ CI C  C   CPA  +  +       G +        +  CI CG C   CP
Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP 427


>gi|320160963|ref|YP_004174187.1| indolepyruvate oxidoreductase subunit IorA [Anaerolinea thermophila
           UNI-1]
 gi|319994816|dbj|BAJ63587.1| indolepyruvate oxidoreductase subunit IorA [Anaerolinea thermophila
           UNI-1]
          Length = 609

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 33/107 (30%), Gaps = 5/107 (4%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           V      L+ + K    I+ P    +         A  +Y   E     C  C       
Sbjct: 499 VEGIEKTLKEWMK----ISDPAVLITREECALLPEARAKYVPLEVVEEKCNGCTMCFRVG 554

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
              I    +     +R +   ID   C  C +C + CP DAI+    
Sbjct: 555 CPAISKSEKLDPRYQRPLAV-IDPSLCTGCEICAQVCPRDAILFRNQ 600


>gi|302348414|ref|YP_003816052.1| NAD(P)+-dependent formate dehydrogenase, alpha subunit [Acidilobus
           saccharovorans 345-15]
 gi|302328826|gb|ADL19021.1| NAD(P)+-dependent formate dehydrogenase, alpha subunit [Acidilobus
           saccharovorans 345-15]
          Length = 718

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/97 (18%), Positives = 23/97 (23%), Gaps = 7/97 (7%)

Query: 24  LRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT--IE 81
           L   FK         E+                     RC+ C  C  +C          
Sbjct: 102 LAELFKRYGVEPGGEERPELVDDSHPLLRF-----DFSRCVLCYSCVRVCDEYIGRLIWR 156

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           +  R                 CI C  C + CP  AI
Sbjct: 157 AMYRGQQTVVIPETGKFGTSSCISCRACVDVCPSGAI 193



 Score = 33.9 bits (76), Expect = 6.8,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 38/120 (31%), Gaps = 26/120 (21%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
           L  R  ++ + T+  P                     G   CI+C+ C  +CP+ AI  +
Sbjct: 153 LIWRAMYRGQQTVVIPE----------------TGKFGTSSCISCRACVDVCPSGAIVDK 196

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERL 141
                                   C +C  +CPV   + G    +    R +L +  E L
Sbjct: 197 VMSSSVPDRWGETA----------CSMCSLSCPVRVGLSGSRPVYVDGDRGQLPFSAECL 246


>gi|284049225|ref|YP_003399564.1| sulfite reductase, subunit C [Acidaminococcus fermentans DSM 20731]
 gi|283953446|gb|ADB48249.1| sulfite reductase, subunit C [Acidaminococcus fermentans DSM 20731]
          Length = 325

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 25/83 (30%), Gaps = 8/83 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +         G   +        RCI+C  C   C                     R
Sbjct: 146 CPNDCCKVRMHDFGIIGMTEPQFDPSRCISCGACVKKC--------KQLSVEALHMDKFR 197

Query: 96  YDIDMIKCIYCGLCQEACPVDAI 118
              ++ KCI CG+C  ACP  A 
Sbjct: 198 PVRNVEKCIGCGVCAHACPNRAW 220


>gi|283853442|ref|ZP_06370686.1| ferredoxin-dependent glutamate synthase [Desulfovibrio sp. FW1012B]
 gi|283571162|gb|EFC19178.1| ferredoxin-dependent glutamate synthase [Desulfovibrio sp. FW1012B]
          Length = 544

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 27/80 (33%), Gaps = 15/80 (18%)

Query: 54  RRYPNGEERCIACKLCEAICPAQA--------------ITIESGPRCHDGTRRTVRYDID 99
            +       C  C  C ++CP  A                ++  P         +R   D
Sbjct: 19  WQVDWDIHTCTLCGRCTSVCPVSAIELGVFRKRTITATPALQKKPASDFSIYYGIRQRTD 78

Query: 100 MI-KCIYCGLCQEACPVDAI 118
              +CI CG+C   CP +AI
Sbjct: 79  PAYRCIGCGMCNMVCPNNAI 98



 Score = 37.4 bits (85), Expect = 0.68,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 2/30 (6%)

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
             V +DI    C  CG C   CPV AI  G
Sbjct: 19  WQVDWDIHT--CTLCGRCTSVCPVSAIELG 46



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 23/50 (46%)

Query: 28 FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA 77
          F+ +T    P  +   +  F   + +R+  +   RCI C +C  +CP  A
Sbjct: 48 FRKRTITATPALQKKPASDFSIYYGIRQRTDPAYRCIGCGMCNMVCPNNA 97


>gi|304316606|ref|YP_003851751.1| hypothetical protein Tthe_1147 [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778108|gb|ADL68667.1| protein of unknown function DUF362 [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 378

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/124 (17%), Positives = 38/124 (30%), Gaps = 26/124 (20%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M I    VS   +      F +                +      ++  +H         
Sbjct: 274 MNIDDAKVSNFDIPTL-RGFSVT--------------EKIPPFLMKYLDKHVKPYPIFDY 318

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C +C +C + CP +A+ +                 +D+  CI C  CQE CP  A+  
Sbjct: 319 DVCKSCGICVSNCPPKALKMIDKK-----------PTVDLKTCIRCFCCQELCPHKAVSI 367

Query: 121 GPNF 124
               
Sbjct: 368 KKPH 371


>gi|260589727|ref|ZP_05855640.1| Na(+)-translocating NADH-quinone reductase, A subunit [Blautia
           hansenii DSM 20583]
 gi|260539967|gb|EEX20536.1| Na(+)-translocating NADH-quinone reductase, A subunit [Blautia
           hansenii DSM 20583]
          Length = 449

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 36/105 (34%), Gaps = 8/105 (7%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E    +    G   L      E+ CI C  CE++CPA  +        +      +   +
Sbjct: 348 ELFYVTKNTSGILVLPDSQYEEQPCIRCAGCESVCPAG-LVPYQIEFAYLEEDYDLCESL 406

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLN 143
              +CI CG C   CP          E +  TR      K+R+  
Sbjct: 407 YASECIACGCCSYICPAKR-------ELSVRTRMARDMVKQRMRE 444


>gi|253702471|ref|YP_003023660.1| Fis family transcriptional regulator [Geobacter sp. M21]
 gi|251777321|gb|ACT19902.1| sigma54 specific transcriptional regulator, Fis family [Geobacter
           sp. M21]
          Length = 759

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 11/63 (17%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C  C  C   CP +AI +E               +I   +CI CG C   CP  A V 
Sbjct: 9   DHCRKCYSCVRSCPVKAIKVEK-----------SYTEIIPERCIGCGNCMSHCPQHAKVI 57

Query: 121 GPN 123
             N
Sbjct: 58  ADN 60


>gi|90022045|ref|YP_527872.1| NADH:ubiquinone oxidoreductase subunit RnfB [Saccharophagus
           degradans 2-40]
 gi|89951645|gb|ABD81660.1| electron transport complex, RnfABCDGE type, B subunit
           [Saccharophagus degradans 2-40]
          Length = 206

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 10/66 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E+ CI C  C   CP  AI   +             + + + +C  C LC E CPVD
Sbjct: 116 YIREDECIGCTKCIQACPVDAILGAAKQ----------MHTVIVSECTGCDLCVEPCPVD 165

Query: 117 AIVEGP 122
            I   P
Sbjct: 166 CIDMLP 171



 Score = 37.0 bits (84), Expect = 0.88,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 16/36 (44%)

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                + +       I   +CI C  C +ACPVDAI
Sbjct: 102 DEEHGEESEVPKVAYIREDECIGCTKCIQACPVDAI 137


>gi|20093008|ref|NP_619083.1| glutamine-pyruvate aminotransferase [Methanosarcina acetivorans
           C2A]
 gi|19918327|gb|AAM07563.1| glutamine-pyruvate aminotransferase [Methanosarcina acetivorans
           C2A]
          Length = 503

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 14/81 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++C+ C  C   C       E             R  I+  KC  C  C   CP DAI
Sbjct: 15  DRDQCMDCGRCIENCSYGVYRREGD-----------RILIESRKCTACLRCVAMCPRDAI 63

Query: 119 VEGPNFEFATETRQELYYDKE 139
                 E   + R    + +E
Sbjct: 64  TLT---EKPVDYRSHPIWTRE 81


>gi|2467371|dbj|BAA22587.1| ferredoxin [Sulfolobus sp.]
          Length = 104

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 25/84 (29%), Gaps = 2/84 (2%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
             G   P               + CIA   C   CP         P      ++     +
Sbjct: 22  VYGPVEPPKVLGIHGTIVGVDFDLCIADGSCITACPVNVFQWYDTPGHPASEKKADP--V 79

Query: 99  DMIKCIYCGLCQEACPVDAIVEGP 122
           +   CI+C  C   CPV AI   P
Sbjct: 80  NEQACIFCMACVNVCPVAAIDVKP 103


>gi|113461204|ref|YP_719273.1| electron transport complex protein RnfC [Haemophilus somnus 129PT]
 gi|112823247|gb|ABI25336.1| electron transport complex protein [Haemophilus somnus 129PT]
          Length = 659

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 33/103 (32%), Gaps = 2/103 (1%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C   CP   +  +               +  + +CI CGLC   CP   I  
Sbjct: 379 QSCIRCSACSDACPVH-LMPQQLYWFARAEDHKKSEEYALKECIECGLCAYVCPSH-IPL 436

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
              F        E+    ++      R+E+   R    +   R
Sbjct: 437 IQYFRQEKAKIWEIKEKAQKSEEAKIRFEARQARLEKEEQERR 479


>gi|330446485|ref|ZP_08310137.1| electron transport complex, RnfABCDGE type, C subunit
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
 gi|328490676|dbj|GAA04634.1| electron transport complex, RnfABCDGE type, C subunit
           [Photobacterium leiognathi subsp. mandapamensis
           svers.1.1.]
          Length = 852

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 37/104 (35%), Gaps = 9/104 (8%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C  C  +CP+  +  +               + ++  CI CG C   CP   I    
Sbjct: 379 CIRCSACADVCPSS-LLPQQLQWYAKDQNYEKCEEYNLQDCIECGACAYVCP-SEIPLVQ 436

Query: 123 NFEFAT---ETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            +  A      R +   + ER      R+E++  R +  D   R
Sbjct: 437 YYRQAKAEIWARSQDEINAERARQ---RFEAKQAR-MDRDKAER 476


>gi|323486819|ref|ZP_08092137.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Clostridium symbiosum WAL-14163]
 gi|323399832|gb|EGA92212.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Clostridium symbiosum WAL-14163]
          Length = 261

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 12/88 (13%)

Query: 31  KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT 90
             ++    E G  +P F       +     ++CI+C  C   CP   I+IE G       
Sbjct: 157 PVSLVGKIESGPVNPLFYRLFVKDKGFTVSDKCISCGKCALRCPLNNISIEGGKP----- 211

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                  +   +C +C  C   CP +AI
Sbjct: 212 -------VWKGRCTHCMACIGGCPTEAI 232


>gi|310642487|ref|YP_003947245.1| glutamate synthase family, small subunit, putative [Paenibacillus
           polymyxa SC2]
 gi|309247437|gb|ADO57004.1| Glutamate synthase family, small subunit, putative [Paenibacillus
           polymyxa SC2]
          Length = 209

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 26/71 (36%), Gaps = 13/71 (18%)

Query: 56  YPNGEERCIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                 +C  C+   C   CP QAI  E G              ID  +CI C  C  AC
Sbjct: 78  DTYVPVQCRHCENAPCAHACPVQAIRQEDG-----------VVMIDEDRCIGCTSCVLAC 126

Query: 114 PVDAIVEGPNF 124
           P  AI   P +
Sbjct: 127 PFGAIEVSPVY 137



 Score = 34.7 bits (78), Expect = 4.1,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 26/84 (30%), Gaps = 11/84 (13%)

Query: 59  GEERCIACKLCEAICPA--------QAITIESGPRCHDGTRRTVRYD-IDMIKCIYCGL- 108
              +CI CK CE  C A         A                   D    ++C +C   
Sbjct: 32  DGGQCIGCKACELACFAVHGQAGGIGASVGTVSVPVVPKVYVVRAGDTYVPVQCRHCENA 91

Query: 109 -CQEACPVDAIVEGPNFEFATETR 131
            C  ACPV AI +        E R
Sbjct: 92  PCAHACPVQAIRQEDGVVMIDEDR 115


>gi|296533711|ref|ZP_06896262.1| 4Fe-4S ferredoxin [Roseomonas cervicalis ATCC 49957]
 gi|296265958|gb|EFH12032.1| 4Fe-4S ferredoxin [Roseomonas cervicalis ATCC 49957]
          Length = 666

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 19/67 (28%), Gaps = 9/67 (13%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C  C  C  +CP  A                         C+ CGLC   CP   I   P
Sbjct: 518 CTLCLACTMVCPTGAFAANPDRPELS---------FLEDACVQCGLCATTCPEKVISLTP 568

Query: 123 NFEFATE 129
               A E
Sbjct: 569 RLNLAPE 575



 Score = 40.5 bits (93), Expect = 0.084,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 16/54 (29%), Gaps = 11/54 (20%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
             C  C  +CP  AIT                  I    C  CG C   CP  A
Sbjct: 282 TGCTRCLDLCPTGAITPGKE-----------SVQISAEICAGCGACAAICPTGA 324


>gi|289191700|ref|YP_003457641.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
 gi|288938150|gb|ADC68905.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
          Length = 654

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 7/88 (7%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAIT-------IESGPRCHDGTRRTVRYDI 98
            F+ +   +     E +C  C  C  +CP +          +              +Y I
Sbjct: 229 NFKVKIMKKPRYVDETKCTGCGQCAEVCPIEVPNEFDMGLGMRKAIYKPFPQAVPSKYTI 288

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEF 126
           D   CI CGLC + C   AI      EF
Sbjct: 289 DKEHCIECGLCAKVCGPKAIDFNQKPEF 316



 Score = 37.8 bits (86), Expect = 0.53,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 7/64 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            EE C  C +C   CP  A  +             +  ++    C  CG C   CP  A+
Sbjct: 580 NEEICGGCGVCVKQCPYGAPRLVEKD-------GRLVCEVIAALCKGCGTCAAGCPSGAL 632

Query: 119 VEGP 122
            +  
Sbjct: 633 EQNH 636


>gi|258545781|ref|ZP_05706015.1| electron transport complex, RnfABCDGE type, B subunit
           [Cardiobacterium hominis ATCC 15826]
 gi|258518971|gb|EEV87830.1| electron transport complex, RnfABCDGE type, B subunit
           [Cardiobacterium hominis ATCC 15826]
          Length = 186

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 10/60 (16%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C  C   CP  AI   +             + I   +C  C LC + CPV+ I+  P
Sbjct: 120 CIGCTKCIKACPVDAILGSNQK----------MHTIISDECTGCRLCVDPCPVNCIIMKP 169



 Score = 33.9 bits (76), Expect = 6.6,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 14/26 (53%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPN 123
           I    CI C  C +ACPVDAI+    
Sbjct: 115 IIEDWCIGCTKCIKACPVDAILGSNQ 140


>gi|254490538|ref|ZP_05103724.1| 4Fe-4S binding domain protein [Methylophaga thiooxidans DMS010]
 gi|224464282|gb|EEF80545.1| 4Fe-4S binding domain protein [Methylophaga thiooxydans DMS010]
          Length = 84

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/91 (32%), Positives = 39/91 (42%), Gaps = 20/91 (21%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC------GLCQEACP 114
           + CI C +CE  CP  AI+  +             Y+ID   C  C        C E CP
Sbjct: 7   DECINCDVCEPECPNGAISQGAE-----------IYEIDPDLCTECVGHFDTPQCVEVCP 55

Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLNNG 145
           VD I + P+ E   ET  +LY   E L+  G
Sbjct: 56  VDCIPKDPDHE---ETHDQLYTKYETLMAVG 83


>gi|219871791|ref|YP_002476166.1| electron transport complex protein RnfB [Haemophilus parasuis
           SH0165]
 gi|219691995|gb|ACL33218.1| electron transport complex protein RnfB/NADH:ubiquinone
           oxidoreductase, subunit RnfB [Haemophilus parasuis
           SH0165]
          Length = 202

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 24/79 (30%), Gaps = 10/79 (12%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
                   E   +     EE CI C  C A CP  AI   +             + +   
Sbjct: 94  DVPETSGEEPVAKVAYIHEELCIGCTKCIAACPVDAIVGTNK----------AMHTVIAD 143

Query: 102 KCIYCGLCQEACPVDAIVE 120
            C  C LC   CP D I  
Sbjct: 144 FCTGCELCVAPCPTDCIEM 162



 Score = 37.8 bits (86), Expect = 0.57,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 14/39 (35%)

Query: 84  PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           P             I    CI C  C  ACPVDAIV   
Sbjct: 96  PETSGEEPVAKVAYIHEELCIGCTKCIAACPVDAIVGTN 134


>gi|229816607|ref|ZP_04446905.1| hypothetical protein COLINT_03665 [Collinsella intestinalis DSM
           13280]
 gi|229807813|gb|EEP43617.1| hypothetical protein COLINT_03665 [Collinsella intestinalis DSM
           13280]
          Length = 410

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 3/63 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV---RYDIDMIKCIYCGLCQEACPV 115
            E +CI C+ CE IC   A++  +         R V      ID   C+ CG C  AC  
Sbjct: 209 DEAKCIGCRACERICAHGAVSFPTTRERALKNGRVVESPVACIDHDCCVGCGRCIGACNQ 268

Query: 116 DAI 118
           +AI
Sbjct: 269 NAI 271


>gi|183983397|ref|YP_001851688.1| pyruvate ferredoxin/flavodoxin oxidoreductase family protein
           [Mycobacterium marinum M]
 gi|183176723|gb|ACC41833.1| pyruvate ferredoxin/flavodoxin oxidoreductase family protein
           [Mycobacterium marinum M]
          Length = 1193

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 27/100 (27%), Gaps = 24/100 (24%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRC--------------HDGTRRTVRY--DIDMI 101
              + CI C  C  +CP   I     PR                       RY   +   
Sbjct: 687 WDPDTCIQCGNCSFVCPHSVIRTTLYPRDRLDAAPATFASAPLDAVGLPDTRYTLQVYAE 746

Query: 102 KCIYCGLCQEACP--------VDAIVEGPNFEFATETRQE 133
            C  C LC EACP          AI   P        R+ 
Sbjct: 747 DCTGCNLCVEACPAVVPGKPVTKAINLAPREPLVAAAREN 786


>gi|150399681|ref|YP_001323448.1| ferredoxin [Methanococcus vannielii SB]
 gi|150012384|gb|ABR54836.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           vannielii SB]
          Length = 170

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 7/104 (6%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPVDAIV- 119
           CI C  C+  CP  AIT++S          +  Y   ID  KC+YC  C + CPV ++  
Sbjct: 52  CIGCSGCKNACPTGAITMKSVKPVKITENYSKEYVPKIDYEKCVYCFYCHDFCPVFSLFN 111

Query: 120 ----EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
                 P        + +L    E+ +   D    +I + +  +
Sbjct: 112 EVSPIHPRHVGEEFIKVDLTKLLEKPVEIPDEQLRKIAKILSIN 155


>gi|78485378|ref|YP_391303.1| electron transport complex, RnfABCDGE type, C subunit
           [Thiomicrospira crunogena XCL-2]
 gi|78363664|gb|ABB41629.1| NADH oxidoreductase, RnfABCDGE type, C subunit [Thiomicrospira
           crunogena XCL-2]
          Length = 704

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 21/66 (31%), Gaps = 2/66 (3%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C  C   CP   +  +                + +  CI CG C   CP   I    
Sbjct: 390 CIRCGECMDACPVN-LLPQQLYWHSRSHEFDKVESLKVFDCIECGCCSFVCPSH-IPLVQ 447

Query: 123 NFEFAT 128
            + FA 
Sbjct: 448 YYRFAK 453


>gi|15678874|ref|NP_275991.1| ferredoxin [Methanothermobacter thermautotrophicus str. Delta H]
 gi|2621946|gb|AAB85352.1| ferredoxin [Methanothermobacter thermautotrophicus str. Delta H]
          Length = 128

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 10/71 (14%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
             A+R      E+C+ C  C ++CP  AI IE         R          KCI C  C
Sbjct: 66  HPAVRVVKKDREKCMDCGACVSLCPVGAICIEDDWEIVLDDR----------KCIGCSFC 115

Query: 110 QEACPVDAIVE 120
             +CP  AIV 
Sbjct: 116 VNSCPTKAIVL 126



 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 17/32 (53%)

Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
            KC+ CG C   CPV AI    ++E   + R+
Sbjct: 77  EKCMDCGACVSLCPVGAICIEDDWEIVLDDRK 108


>gi|325264029|ref|ZP_08130762.1| [Fe] hydrogenase gamma [Clostridium sp. D5]
 gi|324031067|gb|EGB92349.1| [Fe] hydrogenase gamma [Clostridium sp. D5]
          Length = 721

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 9/62 (14%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C  C  +C               G   T+R   +   CI+CG C   CP D+I E  
Sbjct: 25  CIKCGQCRRVC---------EDEIGVGKLYTLRSTGEKAICIHCGQCANVCPADSITEVY 75

Query: 123 NF 124
            +
Sbjct: 76  EY 77


>gi|308069559|ref|YP_003871164.1| pyruvate synthase subunit PORC (pyruvate oxidoreductase gamma
           chain) [Paenibacillus polymyxa E681]
 gi|305858838|gb|ADM70626.1| Pyruvate synthase subunit PORC (Pyruvate oxidoreductase gamma
           chain) [Paenibacillus polymyxa E681]
          Length = 337

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 2/76 (2%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               ++C  C  C++ICP      E       G        ID   C  C  C + CP  
Sbjct: 250 EYEADKCTHCAKCDSICPDYCFVWE-EQADKRGRMMPFLQGIDFQYCKGCLKCVDICPSG 308

Query: 117 AIVEGPN-FEFATETR 131
           A+      + +A + R
Sbjct: 309 ALSSRREQWGWAEQNR 324


>gi|110798895|ref|YP_695767.1| ferredoxin [Clostridium perfringens ATCC 13124]
 gi|168215287|ref|ZP_02640912.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium
           perfringens CPE str. F4969]
 gi|110673542|gb|ABG82529.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium
           perfringens ATCC 13124]
 gi|170713321|gb|EDT25503.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium
           perfringens CPE str. F4969]
          Length = 273

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 30/70 (42%), Gaps = 11/70 (15%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
               N    CI CKLCE  CP++AI IE+               ID  KC  CG+C   C
Sbjct: 210 IVNQNCSVGCIGCKLCEKNCPSKAIRIENNLAI-----------IDYEKCTSCGICVSKC 258

Query: 114 PVDAIVEGPN 123
           P  AI    N
Sbjct: 259 PKKAINLRKN 268



 Score = 37.8 bits (86), Expect = 0.50,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 5/78 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCIYCGLCQEAC 113
              +C+ACK C + CP   I I    +    +        +      + CI C LC++ C
Sbjct: 170 DSSKCVACKACVSACPQNLIDIIKEDQKVIVSCNSNDSGKIVNQNCSVGCIGCKLCEKNC 229

Query: 114 PVDAIVEGPNFEFATETR 131
           P  AI    N       +
Sbjct: 230 PSKAIRIENNLAIIDYEK 247


>gi|85860894|ref|YP_463096.1| glutamate synthase (NADPH) [Syntrophus aciditrophicus SB]
 gi|85723985|gb|ABC78928.1| glutamate synthase (NADPH) [Syntrophus aciditrophicus SB]
          Length = 544

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 15/83 (18%)

Query: 58  NGEERCIACKLCEAICPAQAI----------TIESGPRCHDGTRRTVRYDIDMIK----- 102
             +E+C  C  C A+CP QAI          +++ G     G   ++ + I         
Sbjct: 23  WDKEKCALCGRCTAVCPVQAIEPAVFRKRVVSVQPGLAEKPGHLYSIYHGIRQKTDPAHF 82

Query: 103 CIYCGLCQEACPVDAIVEGPNFE 125
           CI CG+C   CP  AI    N E
Sbjct: 83  CIGCGMCDFVCPNGAIQPVRNEE 105



 Score = 35.5 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/60 (20%), Positives = 21/60 (35%)

Query: 28  FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH 87
           F+ +     P         +   H +R+  +    CI C +C+ +CP  AI         
Sbjct: 48  FRKRVVSVQPGLAEKPGHLYSIYHGIRQKTDPAHFCIGCGMCDFVCPNGAIQPVRNEEQD 107


>gi|73670064|ref|YP_306079.1| formylmethanofuran dehydrogenase subunit F [Methanosarcina barkeri
           str. Fusaro]
 gi|72397226|gb|AAZ71499.1| formylmethanofuran dehydrogenase, subunit F [Methanosarcina barkeri
           str. Fusaro]
          Length = 486

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 6/77 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR--YDIDMIKCIYCGLCQEACPVD 116
             E+C  C++C  +CP  AIT E+     D  R      +     KC+ C LC+ ACP D
Sbjct: 126 DLEKCTFCRMCSNLCPVHAITFEAVGEVPDEKRYPKYDAFVNINEKCLPCALCEGACPQD 185

Query: 117 AIVEGPNFEFATETRQE 133
           AI      EF    ++E
Sbjct: 186 AI----EVEFTFPKKEE 198



 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 1/79 (1%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           ++      +RC  C +C  ICP +A+ +        G        +D+ KC +C +C   
Sbjct: 81  IKTLDYDYKRCNGCGICADICPTKALEMGPLHEIATGLDAPAVM-MDLEKCTFCRMCSNL 139

Query: 113 CPVDAIVEGPNFEFATETR 131
           CPV AI      E   E R
Sbjct: 140 CPVHAITFEAVGEVPDEKR 158



 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 4/87 (4%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E+  T         L    +   +C  C LC+ +CP +AI    G R  +  +      +
Sbjct: 234 EREPTPDNPVPFEQLLVDED---KCDYCVLCQDLCPEEAIK-VKGERPCEAPKVEGNVKV 289

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFE 125
           D +KC  C  C+  CP +AI      E
Sbjct: 290 DELKCTQCARCKTVCPYEAIDLQKPME 316



 Score = 41.2 bits (95), Expect = 0.050,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 31/87 (35%), Gaps = 7/87 (8%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T     E         GE  +       E+C  C +C   C   A  +       D   
Sbjct: 191 FTFPKKEEIAPLKEGAEGEIEI-----DTEKCNFCGICARFC--DAFILLEREPTPDNPV 243

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAI 118
              +  +D  KC YC LCQ+ CP +AI
Sbjct: 244 PFEQLLVDEDKCDYCVLCQDLCPEEAI 270



 Score = 38.5 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 6/83 (7%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P+E         GE  L      E     C+ C  +CP++   + + P           
Sbjct: 304 CPYEAIDLQKPMEGELNLIETNLKECDPQGCRGCFNVCPSKLWYVPTDPEDPRKIAFKED 363

Query: 96  YDIDMIKCIYCGLCQEACPVDAI 118
           +      C YCG C +AC +DAI
Sbjct: 364 F------CTYCGACVKACHLDAI 380



 Score = 37.0 bits (84), Expect = 0.80,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 29/88 (32%), Gaps = 6/88 (6%)

Query: 31  KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE-----SGPR 85
                     G      R       + N  E+C+ C LCE  CP  AI +E         
Sbjct: 141 PVHAITFEAVGEVPDEKR-YPKYDAFVNINEKCLPCALCEGACPQDAIEVEFTFPKKEEI 199

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                      +ID  KC +CG+C   C
Sbjct: 200 APLKEGAEGEIEIDTEKCNFCGICARFC 227


>gi|134300070|ref|YP_001113566.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfotomaculum reducens MI-1]
 gi|134052770|gb|ABO50741.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Desulfotomaculum reducens MI-1]
          Length = 272

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 36/107 (33%), Gaps = 23/107 (21%)

Query: 37  PFEKGSTSPRFRGEHALRRY--PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
           P+ K        G     R   P     CI CKLC  +CP  +I  E   + +       
Sbjct: 174 PYRKYYKPENENGTPVDIRKVTPKTNSNCIDCKLCVNLCPMGSIDYEDVSKLN------- 226

Query: 95  RYDIDMIKCIYCGLCQEACPVDA--------IVEGPNFEFATETRQE 133
                   CI CG C + CP +A        +      E    +R+E
Sbjct: 227 ------GICIKCGACIKNCPTEAKYYDDKDYLRHKHELEVDFASRRE 267


>gi|83855177|ref|ZP_00948707.1| formate dehydrogenase, alpha subunit [Sulfitobacter sp. NAS-14.1]
 gi|83843020|gb|EAP82187.1| formate dehydrogenase, alpha subunit [Sulfitobacter sp. NAS-14.1]
          Length = 922

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 5/65 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID----MIKCIYCGLCQEACP 114
             + CI C LC   C  +    +       G      +D+        C+ CG C +ACP
Sbjct: 147 NLDACIQCNLCVRACR-EVQVNDVIGMAGRGHDSYPVFDMADPMGASSCVACGECVQACP 205

Query: 115 VDAIV 119
             A++
Sbjct: 206 TGALM 210


>gi|83941699|ref|ZP_00954161.1| formate dehydrogenase, alpha subunit [Sulfitobacter sp. EE-36]
 gi|83847519|gb|EAP85394.1| formate dehydrogenase, alpha subunit [Sulfitobacter sp. EE-36]
          Length = 922

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 5/65 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID----MIKCIYCGLCQEACP 114
             + CI C LC   C  +    +       G      +D+        C+ CG C +ACP
Sbjct: 147 NLDACIQCNLCVRACR-EVQVNDVIGMAGRGHDSYPVFDMADPMGASSCVACGECVQACP 205

Query: 115 VDAIV 119
             A++
Sbjct: 206 TGALM 210


>gi|317499788|ref|ZP_07958040.1| 4Fe-4S binding domain-containing protein [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|316892928|gb|EFV15158.1| 4Fe-4S binding domain-containing protein [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 254

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 12/88 (13%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
            +   +  +R  + +   P    +C +C +C   CPA AI+ +                 
Sbjct: 159 VELPGNHNYREYNGVPLKPVANGKCTSCGICAKECPAGAISKDDPKVTDK---------- 208

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEF 126
              KCI C  C   CP  A       E 
Sbjct: 209 --EKCISCMHCVAVCPQKARHCNKVMEL 234


>gi|295103163|emb|CBL00707.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
           kD subunit (chain I) [Faecalibacterium prausnitzii
           SL3/3]
          Length = 395

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 6/55 (10%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
             C  C  CE ICP   I +             +   ++  KCI CGLC++ CP 
Sbjct: 9   SECCGCTACEQICPRNCIQMRKNEEG------FLYPVVNNDKCIKCGLCEKVCPF 57


>gi|289191766|ref|YP_003457707.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
 gi|288938216|gb|ADC68971.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
          Length = 260

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 10/71 (14%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
             +  L+RY   E  CI C +C   CP  AI +           R    ++++  C+ CG
Sbjct: 127 HRKIRLKRYELDENTCIKCGICARFCPTNAIKVV----------RRKSIEVNLDLCMGCG 176

Query: 108 LCQEACPVDAI 118
            C E CP   I
Sbjct: 177 ACAEVCPKKCI 187



 Score = 40.9 bits (94), Expect = 0.055,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 15/73 (20%)

Query: 61  ERCIACKLCEAICPAQA---------------ITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++C+ C++C   CP  A                             R  RY++D   CI 
Sbjct: 85  DKCVKCEICAQTCPVGAIYVIEGRAEIEDSEVHYTIKEKSIPHRKIRLKRYELDENTCIK 144

Query: 106 CGLCQEACPVDAI 118
           CG+C   CP +AI
Sbjct: 145 CGICARFCPTNAI 157



 Score = 40.9 bits (94), Expect = 0.060,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 11/67 (16%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           R     +  C+ C +C   CP  AI  E                I+  KCI CG C + C
Sbjct: 200 RDIEVDKNLCVGCFVCVEECPINAIEQEGDKV-----------KINKDKCILCGRCADVC 248

Query: 114 PVDAIVE 120
           P +AI  
Sbjct: 249 PANAIKI 255



 Score = 38.9 bits (89), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 9/63 (14%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E +CI C LC   CP  AI      +            I   KC+ C +C + CPV 
Sbjct: 50  YINETKCIRCNLCYKECPVDAIEKAKVKKSA---------KIIEDKCVKCEICAQTCPVG 100

Query: 117 AIV 119
           AI 
Sbjct: 101 AIY 103


>gi|330864198|emb|CBX74259.1| electron transport complex protein rnfB [Yersinia enterocolitica
           W22703]
          Length = 126

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 24/78 (30%), Gaps = 10/78 (12%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C  C   CP  AI   +             + +    C  C LC   CP D
Sbjct: 30  FIDEANCIGCTKCIQACPVDAIVGAT----------RAMHTVLPDLCTGCDLCVSPCPTD 79

Query: 117 AIVEGPNFEFATETRQEL 134
            I   P        + +L
Sbjct: 80  CIEMIPVATTTANWKWDL 97


>gi|325291003|ref|YP_004267184.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324966404|gb|ADY57183.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 577

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 3/71 (4%)

Query: 59  GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMI--KCIYCGLCQEACPV 115
              +C+ C  C ++C   Q +           T  T  Y+  +    CI CG C + CPV
Sbjct: 143 DTSKCVLCGRCVSVCSSVQNVDAIDFAHRGPQTSVTTPYEEKLTARNCINCGQCIKVCPV 202

Query: 116 DAIVEGPNFEF 126
            A+ E  + + 
Sbjct: 203 GALSERDDTDL 213


>gi|323703107|ref|ZP_08114761.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfotomaculum nigrificans DSM 574]
 gi|323531884|gb|EGB21769.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfotomaculum nigrificans DSM 574]
          Length = 709

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 18/56 (32%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           CIAC  C   C  +                   +     KCI CG C   CP  AI
Sbjct: 586 CIACGQCVDSCHNRVGAAALQLGYIKDAHGETDFARPGDKCIGCGTCSVNCPTGAI 641


>gi|284047493|ref|YP_003397832.1| Fe-S cluster domain protein [Acidaminococcus fermentans DSM 20731]
 gi|283951714|gb|ADB46517.1| Fe-S cluster domain protein [Acidaminococcus fermentans DSM 20731]
          Length = 305

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 7/85 (8%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93
              P +K         E       + +  CI+C +C   CP QAIT+E  P         
Sbjct: 189 EMIPADKKVLVQCNNREKGKAAMTDCKVSCISCGICVKTCPKQAITLEDTPNGSIP---- 244

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAI 118
               ID  KC+ CGLC   CP   +
Sbjct: 245 ---VIDYDKCVGCGLCTMKCPRKCL 266



 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 5/69 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQEAC 113
              +C++C  C   CP   I +    +      ++  +         + CI CG+C + C
Sbjct: 169 DYNKCVSCGACSKACPQLLIEMIPADKKVLVQCNNREKGKAAMTDCKVSCISCGICVKTC 228

Query: 114 PVDAIVEGP 122
           P  AI    
Sbjct: 229 PKQAITLED 237



 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 19/60 (31%), Gaps = 10/60 (16%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C     C   C   A+ I                  D  KC+ CG C +ACP   I   P
Sbjct: 143 CFGDGACVDACNFGALKIGENGLPEF----------DYNKCVSCGACSKACPQLLIEMIP 192


>gi|260892082|ref|YP_003238179.1| NADH dehydrogenase (quinone) [Ammonifex degensii KC4]
 gi|260864223|gb|ACX51329.1| NADH dehydrogenase (quinone) [Ammonifex degensii KC4]
          Length = 626

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 10/68 (14%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            ALRR+    E+CI C  C  +CP +AI  E     H          ID   C+ CG C 
Sbjct: 566 MALRRFVILAEKCIGCGACAYVCPVKAIKGEKKKPHH----------IDEKVCVKCGRCF 615

Query: 111 EACPVDAI 118
           E C   A+
Sbjct: 616 EICRFQAV 623



 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 15/41 (36%)

Query: 78  ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +              R+ I   KCI CG C   CPV AI
Sbjct: 553 QHVTERRCSAGECMALRRFVILAEKCIGCGACAYVCPVKAI 593


>gi|257791490|ref|YP_003182096.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|257475387|gb|ACV55707.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
          Length = 298

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 23/73 (31%), Gaps = 7/73 (9%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G             CI C  C+  C +    +E      D   R          C+ CG 
Sbjct: 219 GRFGQVNVKIDPAACIHCDACKHACLSDPAILEPALDGCDAIVR-------AGDCMACGS 271

Query: 109 CQEACPVDAIVEG 121
           C +ACP  A+   
Sbjct: 272 CIDACPTRALSFT 284


>gi|227498965|ref|ZP_03929102.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226904414|gb|EEH90332.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 580

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 26/94 (27%), Gaps = 5/94 (5%)

Query: 34  INYPFEKGSTSPRFRG-EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
           I+ P+E+       RG            ++CI C  C  +C                   
Sbjct: 119 ISLPYER-ELPKGARGAWTTTYPLYRDYQKCIKCMRCIQVCDKMQTVHIWDVDGTGSRTT 177

Query: 93  TVRYD---IDMIKCIYCGLCQEACPVDAIVEGPN 123
                   I    C  CG C   CP   + E  +
Sbjct: 178 VDVSHNRVIKDSDCTLCGQCITHCPTAGLRERDD 211


>gi|254448470|ref|ZP_05061930.1| electron transport complex, rnfaBcdge type, b subunit [gamma
           proteobacterium HTCC5015]
 gi|198261853|gb|EDY86138.1| electron transport complex, rnfaBcdge type, b subunit [gamma
           proteobacterium HTCC5015]
          Length = 200

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 26/85 (30%), Gaps = 13/85 (15%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E        R          G   CI C LC   CP  AI   +             + +
Sbjct: 96  EPKPLDAEERPPSVAVIEEEG---CIGCTLCIQACPVDAILGAAKQ----------MHTV 142

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPN 123
              +C  C LC E CPVD I     
Sbjct: 143 ITDECTGCELCVEPCPVDVITMEDI 167


>gi|160932076|ref|ZP_02079467.1| hypothetical protein CLOLEP_00910 [Clostridium leptum DSM 753]
 gi|156868678|gb|EDO62050.1| hypothetical protein CLOLEP_00910 [Clostridium leptum DSM 753]
          Length = 501

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 16/84 (19%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +RC+ C++CE  C  +A   +             +   D  KC+ C  C   CP  A+
Sbjct: 15  NYDRCVGCRVCERQCANEAHYFDEAA---------GKMMADESKCVNCHRCVSLCPTRAL 65

Query: 119 VEGP-------NFEFATETRQELY 135
                      N+ +  E  QE+Y
Sbjct: 66  KIVKTDHTFKENYNWTGEAIQEIY 89


>gi|146304202|ref|YP_001191518.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Metallosphaera sedula DSM 5348]
 gi|145702452|gb|ABP95594.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Metallosphaera sedula DSM 5348]
          Length = 103

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + CIA   C   CP         P      ++     ++   CI+C  C   CPV AI
Sbjct: 41  DFDICIADGSCITACPVNVFQWFDTPGNPVSEKKADP--VNENACIFCMACVNVCPVAAI 98

Query: 119 VEGP 122
              P
Sbjct: 99  DVKP 102


>gi|157962176|ref|YP_001502210.1| electron transport complex protein RnfC [Shewanella pealeana ATCC
           700345]
 gi|157847176|gb|ABV87675.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella
           pealeana ATCC 700345]
          Length = 825

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 17/102 (16%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACPVD 116
           + CI C  C  +CP+        P+      +   YD     ++  CI CG C   CP  
Sbjct: 378 KPCIRCGECAVVCPS-----LLLPQQLFWHAKAEEYDKASSFNLHDCIECGCCSFVCP-S 431

Query: 117 AIVEGPNFEFA-------TETRQELYYDKERLLNNGDRWESE 151
            I     +  A       TE +++  + K+R      R E E
Sbjct: 432 DIPLVEYYRIAKSAIRTQTEEKKQADFAKQRFEARLQRLEEE 473


>gi|16082454|ref|NP_394943.1| putative ATPase RIL [Thermoplasma acidophilum DSM 1728]
 gi|10640832|emb|CAC12610.1| probable RNase L inhibitor [Thermoplasma acidophilum]
          Length = 589

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 1/62 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++C   K C   C      + +     D      +  I    CI CG+C   CP  AI
Sbjct: 7   DRDKCHP-KKCHHECQYYCPPVRNHVMAIDFPDPDGQPLISETLCIGCGICIRRCPFGAI 65

Query: 119 VE 120
             
Sbjct: 66  KI 67


>gi|329115317|ref|ZP_08244071.1| Putative pyruvate-flavodoxin oxidoreductase [Acetobacter pomorum
           DM001]
 gi|326695296|gb|EGE46983.1| Putative pyruvate-flavodoxin oxidoreductase [Acetobacter pomorum
           DM001]
          Length = 1209

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 24/87 (27%), Gaps = 23/87 (26%)

Query: 58  NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY--DIDMI 101
              + CI C  C  +CP                A         +       R+     + 
Sbjct: 707 WNPDTCIQCGQCSIVCPHSVIRAKTYEDKDLTGAPASFKSAPVNARGYPDARFTLQFYVE 766

Query: 102 KCIYCGLCQEACP-------VDAIVEG 121
            C  CG+C E CP         AI  G
Sbjct: 767 DCTGCGVCVENCPEISPDGKTRAINMG 793


>gi|320101426|ref|YP_004177018.1| ABC transporter-like protein [Desulfurococcus mucosus DSM 2162]
 gi|319753778|gb|ADV65536.1| ABC transporter related protein [Desulfurococcus mucosus DSM 2162]
          Length = 602

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 20/67 (29%), Gaps = 6/67 (8%)

Query: 59  GEERCIACKL---CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
               C   K    C   CP      +         +  V   I    CI CG+C + CP 
Sbjct: 8   DRNYCKPDKCSLECIRFCPVNRGRRKKAIELSGDNKYVV---ISEDACIGCGICVKKCPF 64

Query: 116 DAIVEGP 122
            AI    
Sbjct: 65  HAISIVN 71


>gi|269986447|gb|EEZ92733.1| ABC transporter related protein [Candidatus Parvarchaeum
           acidiphilum ARMAN-4]
          Length = 572

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 26/70 (37%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +R     E  C A   C  IC      +  G +     R   +  I    CI CG+C + 
Sbjct: 1   MRIAVIKETECEAPDNCNYICAEVCPRVRQGAKETVYARENGKAAITESLCISCGICVKR 60

Query: 113 CPVDAIVEGP 122
           CP DAI    
Sbjct: 61  CPFDAIRIIN 70


>gi|256544556|ref|ZP_05471929.1| NAD-dependent formate dehydrogenase, alpha subunit [Anaerococcus
           vaginalis ATCC 51170]
 gi|256399881|gb|EEU13485.1| NAD-dependent formate dehydrogenase, alpha subunit [Anaerococcus
           vaginalis ATCC 51170]
          Length = 898

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 3/75 (4%)

Query: 54  RRYPNGEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDIDMI--KCIYCGLCQ 110
           + Y     +CI C +C ++C   Q     S       T      D  +    C+ CG C 
Sbjct: 136 KFYSYDPNKCIKCGICVSVCNNLQNSNAISFVDRGFDTYIGTPMDKGLGSCDCVSCGNCV 195

Query: 111 EACPVDAIVEGPNFE 125
            ACPV A+     +E
Sbjct: 196 SACPVGALNPKKKYE 210



 Score = 34.3 bits (77), Expect = 5.5,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 23/80 (28%), Gaps = 5/80 (6%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTRRT 93
           EK     R   +     +PN    C     C+             + +   +        
Sbjct: 76  EKIMKMRREILDLLFSNHPNDCLSCDKSGKCKLQNYCYEYGISEGSFKREIKDLPIDFSN 135

Query: 94  VRYDIDMIKCIYCGLCQEAC 113
             Y  D  KCI CG+C   C
Sbjct: 136 KFYSYDPNKCIKCGICVSVC 155


>gi|256810211|ref|YP_003127580.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus fervens AG86]
 gi|256793411|gb|ACV24080.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus fervens AG86]
          Length = 390

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            + +CI C +C   CP  AI   +G       +    + ++  KCIYC  C E CP D I
Sbjct: 164 DKSKCIYCSICAQTCPWNAIY-VAGRIPKKRRKEVKSFKVEAEKCIYCLKCVEVCPGDMI 222

Query: 119 VEGPN 123
                
Sbjct: 223 KVDNE 227



 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 3/73 (4%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
             +  + C  C  C  +CP  A+            +   R +    KC  CG C EACPV
Sbjct: 26  DIDNFKVCNLCMQCVNVCPNGALV---EEEVEINGKTVKRVNYLAHKCEKCGNCAEACPV 82

Query: 116 DAIVEGPNFEFAT 128
                   F ++ 
Sbjct: 83  GIKKVDDEFPYSK 95



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 3/63 (4%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C   CP  A+ +    +     +   R +     C  CG C E CP+  +  
Sbjct: 301 KMCIVCGACTVACPTGALKL---GKIEHNGKEYNRIEFSPYLCDKCGKCVEVCPMKTLKL 357

Query: 121 GPN 123
             +
Sbjct: 358 ADD 360



 Score = 39.3 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI-DMIKCIYCGLCQEACP 114
           +P  +  C+ C+ C  +CP + I++           +  +  I     C+ CG+C   CP
Sbjct: 91  FPYSKGHCVLCQKCIDVCPIEIISLPGIIDKPRREVKAPKDPIAVTDACVGCGVCVPECP 150

Query: 115 VDAIVEGPN 123
           V+AI    N
Sbjct: 151 VNAISIEDN 159



 Score = 39.3 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 11/80 (13%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
            G      R   A +      + C+ C +C   CP  AI+IE                ID
Sbjct: 116 PGIIDKPRREVKAPKDPIAVTDACVGCGVCVPECPVNAISIEDNKAV-----------ID 164

Query: 100 MIKCIYCGLCQEACPVDAIV 119
             KCIYC +C + CP +AI 
Sbjct: 165 KSKCIYCSICAQTCPWNAIY 184


>gi|237722563|ref|ZP_04553044.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|294646004|ref|ZP_06723670.1| 4Fe-4S binding domain protein [Bacteroides ovatus SD CC 2a]
 gi|294809334|ref|ZP_06768044.1| 4Fe-4S binding domain protein [Bacteroides xylanisolvens SD CC 1b]
 gi|229448373|gb|EEO54164.1| conserved hypothetical protein [Bacteroides sp. 2_2_4]
 gi|292638687|gb|EFF57039.1| 4Fe-4S binding domain protein [Bacteroides ovatus SD CC 2a]
 gi|294443426|gb|EFG12183.1| 4Fe-4S binding domain protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 600

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 8/69 (11%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +  C  C  C  +C  +AIT ++                   KCI CGLC++ CP+  I
Sbjct: 6   DKSECCGCNACGDVCTHEAITFQTDIEGFWYPVVDK------DKCIDCGLCEKVCPIINI 59

Query: 119 V--EGPNFE 125
              +  +FE
Sbjct: 60  DVLKKNDFE 68


>gi|167629826|ref|YP_001680325.1| proton-translocating NADH-ubiquinone oxidoreductase, chain f
           [Heliobacterium modesticaldum Ice1]
 gi|167592566|gb|ABZ84314.1| proton-translocating NADH-ubiquinone oxidoreductase, chain f
           [Heliobacterium modesticaldum Ice1]
          Length = 659

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 36/97 (37%), Gaps = 15/97 (15%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
             LRY F+ +   +   ++           AL  Y    ++C  C LC   CP   IT +
Sbjct: 575 TTLRY-FRDEYEAHIHDQRCPAGRC----AALLTYRIDADKCRGCTLCARRCPVGCITGK 629

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                         Y ID  +CI CG C E C   A+
Sbjct: 630 PREA----------YAIDETRCIKCGACLECCKFGAV 656



 Score = 38.2 bits (87), Expect = 0.44,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 20/54 (37%), Gaps = 1/54 (1%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA-TETR 131
            I             + Y ID  KC  C LC   CPV  I   P   +A  ETR
Sbjct: 587 HIHDQRCPAGRCAALLTYRIDADKCRGCTLCARRCPVGCITGKPREAYAIDETR 640


>gi|332983171|ref|YP_004464612.1| indolepyruvate ferredoxin oxidoreductase subunit alpha [Mahella
           australiensis 50-1 BON]
 gi|332700849|gb|AEE97790.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Mahella
           australiensis 50-1 BON]
          Length = 608

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 21/65 (32%), Gaps = 12/65 (18%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           + Y   E+ C  C  C       A+ +                      C  CGLC + C
Sbjct: 550 KHYTVDEQICTLCNYCVEQLGCPALFVIDDMPA------------IQSTCAGCGLCAQIC 597

Query: 114 PVDAI 118
           PV AI
Sbjct: 598 PVGAI 602


>gi|317126171|ref|YP_004100283.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Intrasporangium
           calvum DSM 43043]
 gi|315590259|gb|ADU49556.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Intrasporangium
           calvum DSM 43043]
          Length = 1201

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 23/75 (30%), Gaps = 16/75 (21%)

Query: 57  PNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY--DIDM 100
               + CI C  C  +CP                A         +       RY   + +
Sbjct: 698 QWDPDSCIQCGNCAFVCPHSVIRSKYYDPDVLIDAPGAFPSAPLNAAGLPGSRYTLQVYV 757

Query: 101 IKCIYCGLCQEACPV 115
             C  CGLC + CPV
Sbjct: 758 EDCTGCGLCVDTCPV 772



 Score = 35.5 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 8/19 (42%)

Query: 100 MIKCIYCGLCQEACPVDAI 118
              CI CG C   CP   I
Sbjct: 701 PDSCIQCGNCAFVCPHSVI 719


>gi|284999078|ref|YP_003420846.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus L.D.8.5]
 gi|284446974|gb|ADB88476.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus L.D.8.5]
          Length = 94

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 26/75 (34%), Gaps = 11/75 (14%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G   + +      +CI CK+C   CP   I   +               +D   C  CG+
Sbjct: 30  GAWRIVKPVVDYNKCIGCKVCFMFCPESTIVPSNDKV-----------RVDYEYCKGCGV 78

Query: 109 CQEACPVDAIVEGPN 123
           C   CPV AI     
Sbjct: 79  CANVCPVKAISMVNE 93


>gi|260598065|ref|YP_003210636.1| putative pyruvate-flavodoxin oxidoreductase [Cronobacter turicensis
           z3032]
 gi|260217242|emb|CBA31152.1| Probable pyruvate-flavodoxin oxidoreductase [Cronobacter turicensis
           z3032]
          Length = 1173

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 34/144 (23%), Gaps = 32/144 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPLGTTQWEKRNIAEAIPIWKEELCTQCNHCVAAC 699

Query: 74  PA--------------QAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPV-- 115
           P                A    +         R  +Y   +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVAPEALADAPGSLAALDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETRQE 133
                  AI      E   E ++ 
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEKRN 783


>gi|257125175|ref|YP_003163289.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Leptotrichia
           buccalis C-1013-b]
 gi|257049114|gb|ACV38298.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Leptotrichia
           buccalis C-1013-b]
          Length = 1189

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 34/107 (31%), Gaps = 22/107 (20%)

Query: 57  PNGEERCIACKLCEAIC--------------PAQAITIESGPRCHDGTRRTVRYDID--M 100
               + CI C  C  +C               A+A       +        + Y I    
Sbjct: 686 EWQPDMCIQCNQCAYVCPHAVIRPFLIDEEEMAKAPEGMPTIKALGRGMNDLNYKIQVSP 745

Query: 101 IKCIYCGLCQEACPVD---AIVEGPNFEFATETRQELYYDKERLLNN 144
           + C  C  C + CP     AIV  P    +   R E+ Y  + L NN
Sbjct: 746 LDCTGCSACVDVCPAPRGKAIVMKPI--QSQIERNEVEYT-DYLFNN 789


>gi|288941460|ref|YP_003443700.1| cobyrinic acid ac-diamide synthase [Allochromatium vinosum DSM 180]
 gi|288896832|gb|ADC62668.1| Cobyrinic acid ac-diamide synthase [Allochromatium vinosum DSM 180]
          Length = 301

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 11/65 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + C  C  CEA C  +A+    G           R+ +D I C  CG C + CP +A+
Sbjct: 69  DRDTCSDCGACEAACRYEALAQIDG-----------RWQVDPIACEGCGACLDRCPSEAL 117

Query: 119 VEGPN 123
              P 
Sbjct: 118 SLVPQ 122


>gi|217968856|ref|YP_002354090.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thauera sp.
           MZ1T]
 gi|217506183|gb|ACK53194.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thauera sp.
           MZ1T]
          Length = 117

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/85 (32%), Positives = 34/85 (40%), Gaps = 15/85 (17%)

Query: 55  RYPNGEERCIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
                 E CI CK   C ++CP  A                    ID  +CI C LC   
Sbjct: 1   MTHVVTEACIRCKYTDCVSMCPVDAFREGPN-----------FLVIDPEECIDCTLCVAE 49

Query: 113 CPVDAIVEGPNFEFATETRQELYYD 137
           CPVDAIV  P  E + E R+ L  +
Sbjct: 50  CPVDAIV--PEDELSDEQREYLALN 72


>gi|188585285|ref|YP_001916830.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349972|gb|ACB84242.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 374

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             C  C LC   C   A+TI +      G  + +       KC  CG+C+ ACPVDAI +
Sbjct: 262 PDCYGCGLCAKSCDFGALTINT---WGSGESKQIVIQHSPWKCFDCGICKLACPVDAIKK 318

Query: 121 GP 122
             
Sbjct: 319 TK 320



 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 12/70 (17%)

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
            C  C +ICP +AI+I+                I    CI C +C   CP  AI +  +F
Sbjct: 33  NCNKCASICPREAISIQGA-----------FPSILRKNCIGCHICVRQCPNGAIYQT-DF 80

Query: 125 EFATETRQEL 134
           ++  + R+ L
Sbjct: 81  DYYRKYREIL 90


>gi|150403238|ref|YP_001330532.1| thiamine pyrophosphate binding domain-containing protein
           [Methanococcus maripaludis C7]
 gi|150034268|gb|ABR66381.1| thiamine pyrophosphate protein domain protein TPP-binding
           [Methanococcus maripaludis C7]
          Length = 612

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 12/65 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            + +C  CK+C       AIT+                   M  C  CGLC   CPVDAI
Sbjct: 559 NKNKCTGCKICVERLGCPAITLNGDIPE------------IMENCTGCGLCMAVCPVDAI 606

Query: 119 VEGPN 123
            E   
Sbjct: 607 KEVDE 611


>gi|2072168|gb|AAB53702.1| hydrogenase diaphorase subunit [Prochlorothrix hollandica]
          Length = 145

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 4/69 (5%)

Query: 55  RYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLCQ 110
           ++     RCI C  C  +C     A   +   R       +        +  C  CG C 
Sbjct: 47  QFGIDHNRCILCTRCVRVCDEIEGAHVWDVAQRGEHCYIVSGMDQPWGTVDACTSCGKCV 106

Query: 111 EACPVDAIV 119
           +ACP  AI 
Sbjct: 107 DACPTGAIF 115


>gi|322515042|ref|ZP_08068050.1| electron transport complex protein RnfB [Actinobacillus ureae ATCC
           25976]
 gi|322118922|gb|EFX91099.1| electron transport complex protein RnfB [Actinobacillus ureae ATCC
           25976]
          Length = 206

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 21/62 (33%), Gaps = 10/62 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ CI C  C   CP  AI   +             + I    C  C LC   CP + I
Sbjct: 112 HEDMCIGCTKCIQACPVDAIIGTNK----------AMHTIIADLCTGCELCVAPCPTNCI 161

Query: 119 VE 120
             
Sbjct: 162 EM 163



 Score = 35.8 bits (81), Expect = 1.7,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           +    CI C  C +ACPVDAI+   
Sbjct: 111 VHEDMCIGCTKCIQACPVDAIIGTN 135


>gi|302336899|ref|YP_003802105.1| hydrogenase, Fe-only [Spirochaeta smaragdinae DSM 11293]
 gi|301634084|gb|ADK79511.1| hydrogenase, Fe-only [Spirochaeta smaragdinae DSM 11293]
          Length = 671

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 21/64 (32%), Gaps = 5/64 (7%)

Query: 59  GEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
              +C+ C  C   C       AI           T    R  I  + CI CG C   CP
Sbjct: 142 DPNKCVLCGDCVRYCHEIQGIGAIDFAFRGEHVQVTPAFGR-SIGEVDCINCGQCAAVCP 200

Query: 115 VDAI 118
             AI
Sbjct: 201 TGAI 204


>gi|261821595|ref|YP_003259701.1| electron transport complex protein RnfB [Pectobacterium wasabiae
           WPP163]
 gi|261605608|gb|ACX88094.1| electron transport complex, RnfABCDGE type, B subunit
           [Pectobacterium wasabiae WPP163]
          Length = 192

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 22/73 (30%), Gaps = 10/73 (13%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            A       E  CI C  C   CP  AI   +             + +    C  C LC 
Sbjct: 105 PARHVAWIDESNCIGCTKCIQACPVDAIIGSTK----------AVHTVVSDLCTGCDLCV 154

Query: 111 EACPVDAIVEGPN 123
             CP D I   P 
Sbjct: 155 SPCPTDCIELRPI 167


>gi|113970402|ref|YP_734195.1| electron transport complex protein RnfB [Shewanella sp. MR-4]
 gi|123324999|sp|Q0HIH9|RNFB_SHESM RecName: Full=Electron transport complex protein rnfB
 gi|113885086|gb|ABI39138.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           sp. MR-4]
          Length = 193

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 25/72 (34%), Gaps = 10/72 (13%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
              +     E+ CI C  C   CP  AI               + + +    C  C LC 
Sbjct: 102 QVKKVAYIREDECIGCTKCIQACPVDAIIGAGK----------LMHTVLTADCTGCDLCV 151

Query: 111 EACPVDAIVEGP 122
           E CPVD I   P
Sbjct: 152 EPCPVDCIDMLP 163


>gi|107023146|ref|YP_621473.1| dihydropyrimidine dehydrogenase [Burkholderia cenocepacia AU 1054]
 gi|116686614|ref|YP_839861.1| dihydropyrimidine dehydrogenase [Burkholderia cenocepacia HI2424]
 gi|105893335|gb|ABF76500.1| dihydroorotate oxidase B, catalytic subunit [Burkholderia
           cenocepacia AU 1054]
 gi|116652329|gb|ABK12968.1| dihydropyrimidine dehydrogenase (NADP+) [Burkholderia cenocepacia
           HI2424]
          Length = 437

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 6/63 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117
            ++RCI C LC   C     + ++     DG R    +++   +C+ C LC   CPV   
Sbjct: 341 DQDRCIQCGLCHIACED--TSHQAITATKDGAR---HFEVVDSECVGCNLCMHVCPVEQC 395

Query: 118 IVE 120
           I  
Sbjct: 396 ITM 398


>gi|53728862|ref|ZP_00348260.1| COG2878: Predicted NADH:ubiquinone oxidoreductase, subunit RnfB
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|165975622|ref|YP_001651215.1| electron transport complex protein RnfB [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|303250915|ref|ZP_07337106.1| electron transport complex protein RnfB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|303251990|ref|ZP_07338161.1| electron transport complex protein RnfB [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307244978|ref|ZP_07527075.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307247152|ref|ZP_07529204.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307249376|ref|ZP_07531369.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307251696|ref|ZP_07533601.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307253931|ref|ZP_07535783.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258385|ref|ZP_07540126.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|307260624|ref|ZP_07542316.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|165875723|gb|ABY68771.1| putative ferredoxin II, iron sulfur protein [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|302649420|gb|EFL79605.1| electron transport complex protein RnfB [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302650221|gb|EFL80386.1| electron transport complex protein RnfB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306854143|gb|EFM86351.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306856401|gb|EFM88552.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306858598|gb|EFM90661.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306860893|gb|EFM92901.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306863135|gb|EFM95077.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306867569|gb|EFM99416.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306869701|gb|EFN01486.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 203

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 21/65 (32%), Gaps = 10/65 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ CI C  C   CP  AI   +             + +    C  C LC   CP + I
Sbjct: 112 HEDMCIGCTKCIQACPVDAIIGTNK----------AMHTVIPDLCTGCELCVAPCPTNCI 161

Query: 119 VEGPN 123
                
Sbjct: 162 EMVKQ 166



 Score = 38.2 bits (87), Expect = 0.38,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 14/25 (56%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           I    CI C  C +ACPVDAI+   
Sbjct: 111 IHEDMCIGCTKCIQACPVDAIIGTN 135


>gi|329914674|ref|ZP_08276144.1| Iron-sulfur cluster-binding protein [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327545089|gb|EGF30386.1| Iron-sulfur cluster-binding protein [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 547

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 25/81 (30%), Gaps = 9/81 (11%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
                 C  C  C   CP  A+   +         +          C+ CGLC+  CP +
Sbjct: 409 NINTSACTLCMSCVGACPESALMDNADLPQLRFVEKN---------CVQCGLCETTCPEN 459

Query: 117 AIVEGPNFEFATETRQELYYD 137
           AI   P        +Q    +
Sbjct: 460 AITLTPRLLLTDVAKQSRVLN 480



 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 11/55 (20%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           I C  C  +C A AI  +                +    C+ CG C   CP  A+
Sbjct: 169 IGCTSCIDVCSADAIRHDGN-----------LVKVVPNLCVGCGACTTVCPSGAL 212



 Score = 37.4 bits (85), Expect = 0.70,   Method: Composition-based stats.
 Identities = 11/36 (30%), Positives = 14/36 (38%)

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
           R      ID+  C  C  C +ACP  AI      + 
Sbjct: 36  RWQQSNPIDLEICTRCNACVDACPEQAIDLMYQIDL 71



 Score = 33.5 bits (75), Expect = 8.6,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 14/60 (23%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           +  P   E C  C  C   CP QAI               + Y ID+ KC     C +AC
Sbjct: 39  QSNPIDLEICTRCNACVDACPEQAID--------------LMYQIDLNKCTSHSDCVKAC 84


>gi|251792841|ref|YP_003007567.1| electron transport complex protein RnfB [Aggregatibacter
           aphrophilus NJ8700]
 gi|247534234|gb|ACS97480.1| electron transport complex protein RnfB [Aggregatibacter
           aphrophilus NJ8700]
          Length = 197

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 25/82 (30%), Gaps = 10/82 (12%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
            +   +     + A +     E+ CI C  C   CP  AI   +             + I
Sbjct: 90  VEPPETEDLAEDPAPKVAFIHEDMCIGCTKCIQACPVDAIIGSNK----------AMHTI 139

Query: 99  DMIKCIYCGLCQEACPVDAIVE 120
               C  C LC   CP   I  
Sbjct: 140 IPDLCTGCELCVAPCPTSCISM 161



 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 14/25 (56%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           I    CI C  C +ACPVDAI+   
Sbjct: 109 IHEDMCIGCTKCIQACPVDAIIGSN 133


>gi|254511850|ref|ZP_05123917.1| formate dehydrogenase, alpha subunit [Rhodobacteraceae bacterium
           KLH11]
 gi|221535561|gb|EEE38549.1| formate dehydrogenase, alpha subunit [Rhodobacteraceae bacterium
           KLH11]
          Length = 927

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 28/85 (32%), Gaps = 10/85 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD- 97
           EK            +         CI C LC   C  +    +       G    V +D 
Sbjct: 135 EKIPLLDDSHVAMRVNLD-----ACINCNLCVRACR-EVQVNDVIGMAGRGHTSQVVFDQ 188

Query: 98  ---IDMIKCIYCGLCQEACPVDAIV 119
              +    C+ CG C +ACP  A++
Sbjct: 189 QDPMGDSTCVACGECVQACPTGALM 213


>gi|160935395|ref|ZP_02082777.1| hypothetical protein CLOBOL_00290 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441753|gb|EDP19453.1| hypothetical protein CLOBOL_00290 [Clostridium bolteae ATCC
           BAA-613]
          Length = 244

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 12/74 (16%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            +C  C  C + CP   IT    P           ++I    CI CG C E CP  A+V 
Sbjct: 177 RQCRGCGNCLSKCPQTCITTAQVP-----------FEIQKEHCIRCGNCLEVCPFGAVVR 225

Query: 121 GPNF-EFATETRQE 133
                  A + R++
Sbjct: 226 REEDGTTAGQWRKD 239


>gi|111075024|gb|ABH04874.1| NAD(P)H-quinone oxidoreductase 51 kDa subunit [Heliobacillus
           mobilis]
          Length = 609

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 33/93 (35%), Gaps = 15/93 (16%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80
              +RY F+ +   +    +            L  +      C  C LC   CP  AIT 
Sbjct: 524 STTIRY-FREEYLAHIQERRCPAGVC----RELTTFEIDGALCNGCGLCRRDCPTDAITG 578

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
            +  R          + ID  KCI CG C ++C
Sbjct: 579 STKQR----------HVIDQEKCIRCGNCVDSC 601



 Score = 38.5 bits (88), Expect = 0.27,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 8/62 (12%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
            I+         R    ++ID   C  CGLC+  CP DAI           T+Q    D+
Sbjct: 537 HIQERRCPAGVCRELTTFEIDGALCNGCGLCRRDCPTDAI--------TGSTKQRHVIDQ 588

Query: 139 ER 140
           E+
Sbjct: 589 EK 590


>gi|70729914|ref|YP_259653.1| dihydropyrimidine dehydrogenase [Pseudomonas fluorescens Pf-5]
 gi|68344213|gb|AAY91819.1| dihydroorotate dehydrogenase family protein [Pseudomonas
           fluorescens Pf-5]
          Length = 424

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 4/66 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117
            ++ CI C  C   C   +    +  R  DG+     Y++   +C+ C LCQ  CPV   
Sbjct: 341 DQQACIGCGRCHIACEDTSHQAIASLRQADGSH---VYEVIDDECVGCNLCQITCPVQDC 397

Query: 118 IVEGPN 123
           I   P 
Sbjct: 398 IEMVPQ 403


>gi|330721036|gb|EGG99188.1| Electron transport complex protein RnfC [gamma proteobacterium
           IMCC2047]
          Length = 441

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 10/78 (12%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQ 110
             P  E+ CI C +C   CPA  +     P+      ++  +D     +++ CI CG C 
Sbjct: 33  PDPAPEQACIRCGMCAEACPASLL-----PQQLYWFSKSREFDKALSHNLLDCIECGACS 87

Query: 111 EACPVDAIVEGPNFEFAT 128
             CP   I     + FA 
Sbjct: 88  YVCP-SNIPLVQYYRFAK 104


>gi|261211946|ref|ZP_05926232.1| electron transport complex protein RnfB [Vibrio sp. RC341]
 gi|260838554|gb|EEX65205.1| electron transport complex protein RnfB [Vibrio sp. RC341]
          Length = 195

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 24/79 (30%), Gaps = 10/79 (12%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103
           S               E+ CI C  C   CP  AI   +             + +   +C
Sbjct: 95  SAHDLDNKVKMVAFIHEDMCIGCTKCIQACPVDAIVGGNK----------ALHTVIKNEC 144

Query: 104 IYCGLCQEACPVDAIVEGP 122
             C LC   CP D I   P
Sbjct: 145 TGCDLCVAPCPTDCIEMIP 163


>gi|257094524|ref|YP_003168165.1| electron transport complex protein RnfB [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257047048|gb|ACV36236.1| electron transport complex, RnfABCDGE type, B subunit [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 180

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 10/67 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ CI C LC   CP  AI   +             + +    C  C LC + CPV+ I
Sbjct: 106 DEQTCIGCTLCIQACPVDAIVGAAKQ----------MHTVVEPLCTGCELCVKPCPVECI 155

Query: 119 VEGPNFE 125
              P  E
Sbjct: 156 HMLPINE 162



 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 16/37 (43%)

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                    +      ID   CI C LC +ACPVDAI
Sbjct: 89  EVKPLEAEEKPKQVAIIDEQTCIGCTLCIQACPVDAI 125


>gi|313117476|ref|YP_004044459.1| formate dehydrogenase, alpha subunit, archaeal-type
           [Halogeometricum borinquense DSM 11551]
 gi|312294367|gb|ADQ68798.1| formate dehydrogenase, alpha subunit, archaeal-type
           [Halogeometricum borinquense DSM 11551]
          Length = 1098

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 4/68 (5%)

Query: 57  PNGEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
                +CI C  C   C        + IE          ++    +   +C+ CG C   
Sbjct: 207 QIDRNKCILCNRCVEACNDVQVEGVLRIEGSGPDTRIGFQSDAETMADSECVSCGHCATV 266

Query: 113 CPVDAIVE 120
           CP  +I E
Sbjct: 267 CPTGSITE 274


>gi|289811295|ref|ZP_06541924.1| electron transport complex protein RnfB [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 171

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 22/67 (32%), Gaps = 10/67 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   +             + +    C  C LC + CP   I
Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTHCI 162

Query: 119 VEGPNFE 125
              P  E
Sbjct: 163 ELRPVNE 169



 Score = 35.1 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C  C +ACPVDAI
Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132


>gi|239617513|ref|YP_002940835.1| Cobyrinic acid ac-diamide synthase [Kosmotoga olearia TBF 19.5.1]
 gi|239506344|gb|ACR79831.1| Cobyrinic acid ac-diamide synthase [Kosmotoga olearia TBF 19.5.1]
          Length = 282

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 25/81 (30%), Gaps = 11/81 (13%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
                   +  L      +++C  C  C  +C   AI++                 +   
Sbjct: 48  EVKFEHEEQVLLLLPKVNKDKCTLCGECARVCQFGAISVFK-----------TGVMVFDS 96

Query: 102 KCIYCGLCQEACPVDAIVEGP 122
            C  CG C   CP  AI E P
Sbjct: 97  LCHGCGACSIICPTKAIYEVP 117


>gi|167045123|gb|ABZ09786.1| putative 4Fe-4S binding domain protein [uncultured marine
           crenarchaeote HF4000_APKG8I13]
          Length = 99

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 1/68 (1%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C LC  IC      +        G +R   +     +CI  G C   CP  AI  
Sbjct: 12  QMCIGCALCVEICTTLGPDVLRVKPVE-GWKRGKAFVFYPERCISDGACIGVCPTKAIFW 70

Query: 121 GPNFEFAT 128
               +F  
Sbjct: 71  MRPMDFTV 78


>gi|187251160|ref|YP_001875642.1| hydrogenase large subunit domain-containing protein [Elusimicrobium
           minutum Pei191]
 gi|186971320|gb|ACC98305.1| Hydrogenase large subunit domain protein [Elusimicrobium minutum
           Pei191]
          Length = 482

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 7/70 (10%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT-------VRYDIDMIKCIYCGLC 109
              + +C+ C LC  +CP  AI     P                    ID  KC+ CG C
Sbjct: 123 HIDKTKCVECGLCAKVCPFSAILSYKRPCEKACKVVNAISMNSTKEAKIDDKKCVSCGAC 182

Query: 110 QEACPVDAIV 119
              CP  AI+
Sbjct: 183 INQCPFGAIM 192



 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 12/58 (20%)

Query: 63  CIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C    CE +CP  AI+ +   + H          ID  KC+ CGLC + CP  AI
Sbjct: 97  CRGCIAHRCEQVCPKNAISFDHEQKAH----------IDKTKCVECGLCAKVCPFSAI 144


>gi|163736025|ref|ZP_02143450.1| formate dehydrogenase, alpha subunit [Roseobacter litoralis Och
           149]
 gi|161390692|gb|EDQ15036.1| formate dehydrogenase, alpha subunit [Roseobacter litoralis Och
           149]
          Length = 921

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 5/67 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM----IKCIYCGLCQEACP 114
             + CI C LC   C  +    +       G      +D+        C+ CG C +ACP
Sbjct: 147 NLDACIQCGLCVRACR-EVQVNDVIGMAGRGHDSYPTFDMADPMGDSTCVACGECVQACP 205

Query: 115 VDAIVEG 121
             A++  
Sbjct: 206 TGALMPS 212


>gi|116619258|ref|YP_821414.1| NADH-quinone oxidoreductase subunit G [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116222420|gb|ABJ81129.1| NADH-quinone oxidoreductase, chain G [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 761

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 29/96 (30%), Gaps = 10/96 (10%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
            EK  T  +               RCI C  C  IC         G              
Sbjct: 128 EEKVHTPEKQFSPVVFF----DAPRCILCFRCVRICNEGLGVGALGVINRGVVSEIAPNV 183

Query: 98  IDMIKCIYCGLCQEACPVDAI------VEGPNFEFA 127
            D ++C  CG C + CPV A+       +   +E A
Sbjct: 184 GDHLECDECGACIDICPVGALTSGIYRYQTRPWEMA 219


>gi|298506822|gb|ADI85545.1| electron transfer flavoprotein, alpha subunit [Geobacter
           sulfurreducens KN400]
          Length = 447

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 29/81 (35%), Gaps = 16/81 (19%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACK-LCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
                + RG   L      E +CIAC   C++ CP   I +                 I 
Sbjct: 4   PVKPKKPRGRARLI-----EGKCIACGARCQSACPVNCIDMNDAGEP----------IIL 48

Query: 100 MIKCIYCGLCQEACPVDAIVE 120
             KCI C  C + CP +A+  
Sbjct: 49  SEKCIGCVKCVKVCPAEALEM 69



 Score = 35.1 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGL-CQEACPVDAIVEGP 122
           +     +   R  +   KCI CG  CQ ACPV+ I    
Sbjct: 3   QPVKPKKPRGRARLIEGKCIACGARCQSACPVNCIDMND 41


>gi|237738029|ref|ZP_04568510.1| MinD family protein [Fusobacterium mortiferum ATCC 9817]
 gi|229419909|gb|EEO34956.1| MinD family protein [Fusobacterium mortiferum ATCC 9817]
          Length = 280

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 28/82 (34%), Gaps = 19/82 (23%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
            +     G   +++     E+CI C  C   C  +A+                       
Sbjct: 49  PSEKEKNGFLGMKKAKIDSEKCIHCNRCYEYCKFEAMDNV-------------------Q 89

Query: 102 KCIYCGLCQEACPVDAIVEGPN 123
           KC  CG+C+  CPV AI    N
Sbjct: 90  KCEGCGVCEYICPVGAIEMIEN 111


>gi|229523194|ref|ZP_04412601.1| electron transport complex protein RnfC [Vibrio cholerae TM
           11079-80]
 gi|229339557|gb|EEO04572.1| electron transport complex protein RnfC [Vibrio cholerae TM
           11079-80]
          Length = 880

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 29/109 (26%), Gaps = 20/109 (18%)

Query: 13  LKEFVGA---FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69
           L   +         L +          P  K +        + L    N    CI C  C
Sbjct: 360 LPRLIMGGPMMGFTLPHA-------QVPITKTANCILAPTRNELTSSDNEMA-CIRCGQC 411

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMI----KCIYCGLCQEACP 114
              CP   +     P+      +   +D         CI CG C   CP
Sbjct: 412 AEACPVSLL-----PQQLQWHAKAEEFDKCEELNLKDCIECGACAYVCP 455



 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 10/13 (76%), Positives = 10/13 (76%)

Query: 103 CIYCGLCQEACPV 115
           CI CG C EACPV
Sbjct: 405 CIRCGQCAEACPV 417


>gi|222054300|ref|YP_002536662.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           FRC-32]
 gi|221563589|gb|ACM19561.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           FRC-32]
          Length = 427

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 2/64 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C  C  C  ICP  AI++ S        R +    ++   C+ CG+C  +C   AI
Sbjct: 288 DAHSCSGCGRCADICPIGAISVVSKHEVDGVPRTSGV--VNGDICLGCGICVRSCSATAI 345

Query: 119 VEGP 122
              P
Sbjct: 346 KLVP 349



 Score = 34.3 bits (77), Expect = 5.0,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 13/35 (37%)

Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
           C  CG C + CP+ AI      E     R     +
Sbjct: 292 CSGCGRCADICPIGAISVVSKHEVDGVPRTSGVVN 326


>gi|154249084|ref|YP_001409909.1| electron transport complex, RnfABCDGE type, C subunit
           [Fervidobacterium nodosum Rt17-B1]
 gi|154153020|gb|ABS60252.1| electron transport complex, RnfABCDGE type, C subunit
           [Fervidobacterium nodosum Rt17-B1]
          Length = 435

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 20/74 (27%), Gaps = 1/74 (1%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100
                   G   +         CI C  C  +CP                +      I +
Sbjct: 339 TPILKGNNGLTIITEQKRESTNCIRCSYCVHVCPMNLQPYLLDL-LSRKKKYDEAAAIGL 397

Query: 101 IKCIYCGLCQEACP 114
           + CI CG C   CP
Sbjct: 398 LDCIECGSCTYICP 411


>gi|119385581|ref|YP_916636.1| formate dehydrogenase, alpha subunit [Paracoccus denitrificans
           PD1222]
 gi|119376176|gb|ABL70940.1| formate dehydrogenase alpha subunit [Paracoccus denitrificans
           PD1222]
          Length = 959

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 4/87 (4%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRT 93
             +G        + +   +     +CI C  C   C       A+TIE        +   
Sbjct: 154 DAEGPNPEYRPKDQSNPYFTFDPAKCIVCSRCVRACEEVQGTFALTIEGRGFDSRVSAGL 213

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVE 120
              D     C+ CG C + CP   ++E
Sbjct: 214 ASDDFLSSDCVSCGACVQVCPTATLIE 240


>gi|332534029|ref|ZP_08409878.1| electron transport complex protein RnfB [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332036466|gb|EGI72934.1| electron transport complex protein RnfB [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 184

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 10/69 (14%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E+ CI C  C   CP  AI   +             + + + +C  C LC E CPVD
Sbjct: 108 YIREDECIGCTKCIQACPVDAILGAT----------RQMHTVLIDECTGCDLCVEPCPVD 157

Query: 117 AIVEGPNFE 125
            I   P  E
Sbjct: 158 CIDMLPVAE 166


>gi|331001833|ref|ZP_08325355.1| pyruvate:ferredoxin oxidoreductase [Lachnospiraceae oral taxon 107
           str. F0167]
 gi|330412807|gb|EGG92190.1| pyruvate:ferredoxin oxidoreductase [Lachnospiraceae oral taxon 107
           str. F0167]
          Length = 1175

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 21/81 (25%), Gaps = 15/81 (18%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG        N  + CI C  C  +CP                A    S           
Sbjct: 681 RGIAVNMPIWN-SDNCIQCGFCSYVCPHAVIRTVALTEDEANNAPEGMSILPMTGMPNYK 739

Query: 94  VRYDIDMIKCIYCGLCQEACP 114
               +  + C  CG C   CP
Sbjct: 740 FTVAVSALDCTGCGSCANVCP 760


>gi|323492347|ref|ZP_08097500.1| electron transport complex protein RnfB [Vibrio brasiliensis LMG
           20546]
 gi|323313394|gb|EGA66505.1| electron transport complex protein RnfB [Vibrio brasiliensis LMG
           20546]
          Length = 194

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 24/79 (30%), Gaps = 10/79 (12%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103
           S               E+ CI C  C   CP  AI   +             + +   +C
Sbjct: 95  SAHDLENAVKTVAFIHEDMCIGCTKCIQACPVDAIVGGTK----------ALHTVIKDEC 144

Query: 104 IYCGLCQEACPVDAIVEGP 122
             C LC   CP D I   P
Sbjct: 145 TGCDLCVAPCPTDCIEMIP 163


>gi|320161502|ref|YP_004174726.1| putative ferredoxin [Anaerolinea thermophila UNI-1]
 gi|319995355|dbj|BAJ64126.1| putative ferredoxin [Anaerolinea thermophila UNI-1]
          Length = 136

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 21/61 (34%), Gaps = 6/61 (9%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+    C  +CP + I                 Y ID   CI CG C   CP +AI    
Sbjct: 9   CLRDGGCATVCPVECIV------PGQPVDEWPWYYIDPDTCIDCGACVPECPWEAIFPED 62

Query: 123 N 123
            
Sbjct: 63  E 63


>gi|307243874|ref|ZP_07525999.1| pyruvate synthase [Peptostreptococcus stomatis DSM 17678]
 gi|306492696|gb|EFM64724.1| pyruvate synthase [Peptostreptococcus stomatis DSM 17678]
          Length = 1177

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 27/87 (31%), Gaps = 18/87 (20%)

Query: 57  PNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRYDIDMI- 101
               + CI C  C  +CP                A       +        ++Y I +  
Sbjct: 684 EWQIDNCIQCNQCSLVCPHAAIRPFLLTEEEVANAPEGFETKKAAGKGLEGLQYRIQVSA 743

Query: 102 -KCIYCGLCQEACP--VDAIVEGPNFE 125
             C  CG C + CP    A++  P  E
Sbjct: 744 MDCTGCGNCADICPAKTKALIMKPMEE 770


>gi|261253562|ref|ZP_05946135.1| electron transport complex protein RnfB [Vibrio orientalis CIP
           102891]
 gi|260936953|gb|EEX92942.1| electron transport complex protein RnfB [Vibrio orientalis CIP
           102891]
          Length = 194

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 24/79 (30%), Gaps = 10/79 (12%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103
           S               E+ CI C  C   CP  AI   +             + +   +C
Sbjct: 95  SAHDLENAVKTVAFIHEDMCIGCTKCIQACPVDAIVGGTK----------ALHTVIKDEC 144

Query: 104 IYCGLCQEACPVDAIVEGP 122
             C LC   CP D I   P
Sbjct: 145 TGCDLCVAPCPTDCIEMIP 163


>gi|227111413|ref|ZP_03825069.1| electron transport complex protein RnfB [Pectobacterium carotovorum
           subsp. brasiliensis PBR1692]
          Length = 192

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 23/73 (31%), Gaps = 10/73 (13%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            A +     E  CI C  C   CP  AI   +             + +    C  C LC 
Sbjct: 105 PARQVAWIDESNCIGCTKCIQACPVDAIIGSTK----------AVHTVVSDLCTGCDLCV 154

Query: 111 EACPVDAIVEGPN 123
             CP D I   P 
Sbjct: 155 SPCPTDCIELRPI 167


>gi|220935791|ref|YP_002514690.1| electron transport complex, RnfABCDGE type, C subunit
           [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997101|gb|ACL73703.1| electron transport complex, RnfABCDGE type, C subunit
           [Thioalkalivibrio sp. HL-EbGR7]
          Length = 532

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 36/102 (35%), Gaps = 11/102 (10%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            CI C  C   CPAQ +  +               D  +  CI CG C   CP   I   
Sbjct: 377 PCIRCGQCAEACPAQ-LLPQQLYWFARAKDFDKAQDYSLFDCIECGCCAYVCP-SNIPLV 434

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
             + FA    +   + +ER     +R +++I R        R
Sbjct: 435 QYYRFA----KNEIWSQER-----ERRKADIARERHEFRQAR 467


>gi|118594392|ref|ZP_01551739.1| formate dehydrogenase, alpha subunit [Methylophilales bacterium
           HTCC2181]
 gi|118440170|gb|EAV46797.1| formate dehydrogenase, alpha subunit [Methylophilales bacterium
           HTCC2181]
          Length = 947

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 2/80 (2%)

Query: 55  RYPNGEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
            +     +CI C  C   C        +    R  D        D    +C+ CG C +A
Sbjct: 157 YFTFDPSKCIVCSRCVRACEEVQGTFALTIDGRGFDSKVSAGNKDFIDSECVSCGACVQA 216

Query: 113 CPVDAIVEGPNFEFATETRQ 132
           CP   ++E    +     R 
Sbjct: 217 CPTATLIENSIIDNGVPDRS 236


>gi|91773344|ref|YP_566036.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methanococcoides burtonii
           DSM 6242]
 gi|91712359|gb|ABE52286.1| conserved methanogen protein with ferredoxin domains
           [Methanococcoides burtonii DSM 6242]
          Length = 540

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 23/68 (33%), Gaps = 9/68 (13%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY--CGLCQE 111
                    CI C  CE  CP  AI I                + +  +C+   C  C  
Sbjct: 472 IIIEEHAPECIRCGQCEVECPEDAIKIIERDGELYA-------NYNSERCLGTSCRRCVA 524

Query: 112 ACPVDAIV 119
            CPVDAI 
Sbjct: 525 VCPVDAIH 532


>gi|116754868|ref|YP_843986.1| methyl-viologen-reducing hydrogenase, delta subunit [Methanosaeta
           thermophila PT]
 gi|116666319|gb|ABK15346.1| CoB--CoM heterodisulfide reductase subunit A [Methanosaeta
           thermophila PT]
          Length = 791

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 14/76 (18%)

Query: 47  FRGEHAL--RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
           F+GE  L         ++CI C+LC   CP++AI+++                    +C 
Sbjct: 566 FKGEIELDPTVAFVDRDKCIGCRLCVDTCPSRAISVKDTAFVD------------EARCK 613

Query: 105 YCGLCQEACPVDAIVE 120
            CG C  ACPVDAI  
Sbjct: 614 GCGTCAAACPVDAIEM 629



 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 26/88 (29%), Gaps = 8/88 (9%)

Query: 46  RFRGEHALRRYPNGEERCIAC-KLCEAICPAQAITIESGPRCHDGTRRTVRYD------- 97
            FR     +        C  C   C + CP +                            
Sbjct: 231 HFRVTGVTKPRYVDPTLCKGCINECSSACPVEVPNEYDFGLGKRKAIYMAIPQSVPLVAC 290

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           ID   CI CGLC EACP DA+      E
Sbjct: 291 IDTNACIGCGLCAEACPADAVKYDQQAE 318


>gi|331003589|ref|ZP_08327086.1| hypothetical protein HMPREF0491_01948 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330412430|gb|EGG91821.1| hypothetical protein HMPREF0491_01948 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 420

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 21/58 (36%), Gaps = 6/58 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            +E+C+ C  C   C   A               T    I+  KC+ C LC   CPV 
Sbjct: 341 DKEKCVKCGRCYVSCFDAAHQAIEYD------YETRVPTINEEKCVGCHLCLNVCPVM 392


>gi|329961451|ref|ZP_08299556.1| ferredoxin [Bacteroides fluxus YIT 12057]
 gi|328531799|gb|EGF58625.1| ferredoxin [Bacteroides fluxus YIT 12057]
          Length = 315

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 8/81 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------DMIKCIYCGLCQ 110
            E +C AC  C   CP   I I    +                       + CI CG C 
Sbjct: 169 DEAKCTACGACAKACPKNIIEIRPQGKKSRRMYVQCVNKDKGAVARKACTVACIGCGKCV 228

Query: 111 EACPVDAIVEGPNFEFATETR 131
           + CP +AI    N  +    +
Sbjct: 229 KVCPFEAITLENNLAYIDPNK 249



 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 9/65 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C+ C  C A C   AI +                ++D  KC  CG C +ACP + I
Sbjct: 138 CSYGCLGCGDCVAACQFDAIHMNPETGLP---------EVDEAKCTACGACAKACPKNII 188

Query: 119 VEGPN 123
              P 
Sbjct: 189 EIRPQ 193



 Score = 39.3 bits (90), Expect = 0.16,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 11/60 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI C  C  +CP +AIT+E+               ID  KC  C  C+EACP + I
Sbjct: 217 CTVACIGCGKCVKVCPFEAITLENNLAY-----------IDPNKCKSCRKCEEACPQNTI 265


>gi|298375634|ref|ZP_06985591.1| protein HymB [Bacteroides sp. 3_1_19]
 gi|301310275|ref|ZP_07216214.1| protein HymB [Bacteroides sp. 20_3]
 gi|298268134|gb|EFI09790.1| protein HymB [Bacteroides sp. 3_1_19]
 gi|300831849|gb|EFK62480.1| protein HymB [Bacteroides sp. 20_3]
          Length = 596

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 10/68 (14%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            L +Y    E+C  C LC  +CP  AIT            R + + ID   CI CG C E
Sbjct: 537 ELTQYFINPEKCKGCTLCARVCPVHAITG----------GRKIPHIIDPQACIRCGTCME 586

Query: 112 ACPVDAIV 119
            C   AI 
Sbjct: 587 KCKFGAIY 594



 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 16/40 (40%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +          R   +Y I+  KC  C LC   CPV AI
Sbjct: 524 HVREHRCPSHQCRELTQYFINPEKCKGCTLCARVCPVHAI 563


>gi|291533084|emb|CBL06197.1| Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin
           oxidoreductases, beta subunit [Megamonas hypermegale
           ART12/1]
          Length = 556

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 23/90 (25%), Gaps = 17/90 (18%)

Query: 51  HALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY 96
            A+       ++CI C  C  +CP                A                   
Sbjct: 203 IAINVPEWDIDKCIQCNQCSFVCPHAAIRPVLMTDEEVANAPETMKSKPALGAKGLNFAI 262

Query: 97  DIDMIKCIYCGLCQEACPVD---AIVEGPN 123
            I    C  CG C + CP     A+   P 
Sbjct: 263 TISAKDCAGCGNCADICPAPKGSALAMKPI 292


>gi|256839949|ref|ZP_05545458.1| NADH oxidoreductase (quinone), F subunit [Parabacteroides sp. D13]
 gi|256738879|gb|EEU52204.1| NADH oxidoreductase (quinone), F subunit [Parabacteroides sp. D13]
          Length = 596

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 10/68 (14%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            L +Y    E+C  C LC  +CP  AIT            R + + ID   CI CG C E
Sbjct: 537 ELTQYFINPEKCKGCTLCARVCPVHAITG----------GRKIPHIIDPQACIRCGTCME 586

Query: 112 ACPVDAIV 119
            C   AI 
Sbjct: 587 KCKFGAIY 594



 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 16/40 (40%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +          R   +Y I+  KC  C LC   CPV AI
Sbjct: 524 HVREHRCPSHQCRELTQYFINPEKCKGCTLCARVCPVHAI 563


>gi|253578107|ref|ZP_04855379.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850425|gb|EES78383.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 358

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/120 (18%), Positives = 39/120 (32%), Gaps = 12/120 (10%)

Query: 3   IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRY----PN 58
            ++     L   +   +    ++ +      ++    + +     R   AL  +      
Sbjct: 244 TWKEEEITLLTPDGEISMAEAVKKYGNPAFNVDRTEVRKNI--WTRMAGALNIFQKKPYI 301

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++C+ C +C   CP        G        +      D  KCI C  CQE CP  AI
Sbjct: 302 EADKCVRCGICVQSCPV------PGKAVDFRKGKGKPPVYDYRKCIRCFCCQEMCPKKAI 355


>gi|160902190|ref|YP_001567771.1| NADH dehydrogenase (quinone) [Petrotoga mobilis SJ95]
 gi|160359834|gb|ABX31448.1| NADH dehydrogenase (quinone) [Petrotoga mobilis SJ95]
          Length = 485

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 27/68 (39%), Gaps = 10/68 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L RY    E C  C  C  +CP +AI  E              + ID  KCI CG C   
Sbjct: 427 LIRYEIIPENCTGCTACARVCPTEAIQGELRKP----------HTIDQEKCIKCGSCYTT 476

Query: 113 CPVDAIVE 120
           C  +AI  
Sbjct: 477 CRFNAIKI 484



 Score = 42.0 bits (97), Expect = 0.030,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 8/51 (15%)

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140
            +  +RY+I    C  C  C   CP +AI          E R+    D+E+
Sbjct: 424 CKNLIRYEIIPENCTGCTACARVCPTEAIQ--------GELRKPHTIDQEK 466


>gi|53802977|ref|YP_115288.1| electron transport complex protein RnfC [Methylococcus capsulatus
           str. Bath]
 gi|53756738|gb|AAU91029.1| electron transport complex, C subunit [Methylococcus capsulatus
           str. Bath]
          Length = 523

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 13/103 (12%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            CI C  C  +CP   +  +               +  +  CI CG C   CP   I   
Sbjct: 370 PCIRCGACAEVCPIN-LLPQQLYWYSRADNLRRVEEYHVTDCIECGCCDYVCPSH-IPLV 427

Query: 122 PNF-----EFATETRQELYYDKERLLNNGDRWES-EIVRNIVT 158
             F     E   + R  +  D+ R     +R+E+ +I +    
Sbjct: 428 QYFRAAKSELVAKQRDRVKADRAR-----ERFEARQIRKEREK 465


>gi|126462585|ref|YP_001043699.1| dihydropyrimidine dehydrogenase [Rhodobacter sphaeroides ATCC
           17029]
 gi|221639626|ref|YP_002525888.1| dihydropyrimidine dehydrogenase [Rhodobacter sphaeroides KD131]
 gi|126104249|gb|ABN76927.1| dihydrouracil dehydrogenase (NAD+) / dihydropyrimidine
           dehydrogenase (NADP+) [Rhodobacter sphaeroides ATCC
           17029]
 gi|221160407|gb|ACM01387.1| Dihydrouracil dehydrogenase (NAD+) / dihydropyrimidine
           dehydrogenase [Rhodobacter sphaeroides KD131]
          Length = 434

 Score = 46.2 bits (108), Expect = 0.001,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 8/76 (10%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI C  C A C       E              + +   +C+ 
Sbjct: 330 QYLNLNYVTKAQIDQDLCIKCGRCYAAC-------EDTSHQAIAMSTDRTFTVKDEECVA 382

Query: 106 CGLCQEACPV-DAIVE 120
           C LC + CPV D I  
Sbjct: 383 CNLCVDVCPVEDCITM 398


>gi|331641950|ref|ZP_08343085.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           H736]
 gi|331038748|gb|EGI10968.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           H736]
          Length = 1048

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 520 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPILKEELCTQCNHCVAAC 573

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 574 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 633

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 634 RQNPEIKAINMMSRLEHVEEEK 655


>gi|325262532|ref|ZP_08129269.1| protein HymB [Clostridium sp. D5]
 gi|324032364|gb|EGB93642.1| protein HymB [Clostridium sp. D5]
          Length = 597

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 14/94 (14%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
           ++F+ +   +   +K            L +Y    ++C  C LC   CP+ AI       
Sbjct: 516 HYFRDEYIAHIVDKKCPAGVC----KDLLQYKIDADKCKGCTLCARTCPSDAIIGSVKEP 571

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
                     + I+  KC+ CG C E C   AI 
Sbjct: 572 ----------HMINPEKCVKCGACMEKCRFGAIY 595


>gi|323498079|ref|ZP_08103084.1| electron transport complex protein RnfC [Vibrio sinaloensis DSM
           21326]
 gi|323316859|gb|EGA69865.1| electron transport complex protein RnfC [Vibrio sinaloensis DSM
           21326]
          Length = 617

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 37/104 (35%), Gaps = 9/104 (8%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C  C   CPA  +  +               ++++  CI CG C   CP   I    
Sbjct: 378 CIRCGQCAEACPAS-LLPQQLQWHAKAEEFDKCEELNLKDCIECGACAFVCP-SEIPLVQ 435

Query: 123 NFEFAT---ETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            +  A     TR+E   + E       R+E +  R +  D   R
Sbjct: 436 YYRQAKAEIRTRKE---ESEAAERAKIRFEEKKAR-MERDKAER 475



 Score = 35.8 bits (81), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 19/43 (44%)

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           +  A     ++       TR+ +  +   + CI CG C EACP
Sbjct: 347 LPHANVPITKTANCILAPTRKEISPNQYEMACIRCGQCAEACP 389


>gi|307138027|ref|ZP_07497383.1| putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved
           protein; 4Fe-4S cluster binding protein [Escherichia
           coli H736]
          Length = 1039

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 511 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPILKEELCTQCNHCVAAC 564

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 565 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 624

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 625 RQNPEIKAINMMSRLEHVEEEK 646


>gi|303327154|ref|ZP_07357596.1| putative glutamate synthase, iron-sulfur cluster-binding subunit
           [Desulfovibrio sp. 3_1_syn3]
 gi|302863142|gb|EFL86074.1| putative glutamate synthase, iron-sulfur cluster-binding subunit
           [Desulfovibrio sp. 3_1_syn3]
          Length = 543

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 27/84 (32%), Gaps = 14/84 (16%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRYDID 99
                  ERC  C  C A C   AI      R    +R+                +    
Sbjct: 16  WTIEYHAERCTMCGSCVAACTFNAIEAGVSHRSVTVSRKAFPEPAAEHFALPVIRQKTRI 75

Query: 100 MIKCIYCGLCQEACPVDAIVEGPN 123
              C+ CG+C++ CP  AI    N
Sbjct: 76  EQACVGCGMCEKVCPNRAIRPVRN 99



 Score = 35.1 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 17/38 (44%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134
           +    +C  CG C  AC  +AI  G +    T +R+  
Sbjct: 19  EYHAERCTMCGSCVAACTFNAIEAGVSHRSVTVSRKAF 56


>gi|294677265|ref|YP_003577880.1| pyruvate-flavodoxin oxidoreductase [Rhodobacter capsulatus SB 1003]
 gi|294476085|gb|ADE85473.1| pyruvate-flavodoxin oxidoreductase [Rhodobacter capsulatus SB 1003]
          Length = 1209

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 29/96 (30%), Gaps = 24/96 (25%)

Query: 63  CIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY--DIDMIKCIYC 106
           CI C  C  +CP                A  +      +       R+     +  C  C
Sbjct: 707 CIQCGQCSFVCPHSVIRAKYFDEDLLEGAPEVFKSAPVNARGYPGARFSLQFHVEDCTGC 766

Query: 107 GLCQEACP--------VDAIVEGPNFEFATETRQEL 134
           GLC EACP        V A+          E RQ +
Sbjct: 767 GLCIEACPAQSPVEPGVKALNLTDKAGLLEEARQAM 802


>gi|292492763|ref|YP_003528202.1| electron transport complex, RnfABCDGE type, C subunit
           [Nitrosococcus halophilus Nc4]
 gi|291581358|gb|ADE15815.1| electron transport complex, RnfABCDGE type, C subunit
           [Nitrosococcus halophilus Nc4]
          Length = 515

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 2/67 (2%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            CI C  C  +CP Q +  +               D  +  CI CG C   CP   I   
Sbjct: 368 PCIRCGACGEVCPVQ-LLPQQLYWHARAKELDKLQDYHLFDCIECGCCDYVCPSH-IPLV 425

Query: 122 PNFEFAT 128
             + +A 
Sbjct: 426 HYYRYAK 432


>gi|293396259|ref|ZP_06640538.1| electron transport complex protein RnfB [Serratia odorifera DSM
           4582]
 gi|291421239|gb|EFE94489.1| electron transport complex protein RnfB [Serratia odorifera DSM
           4582]
          Length = 191

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 21/66 (31%), Gaps = 10/66 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C  C   CP  AI   +             + +    C  C LC   CP D
Sbjct: 110 FIDEANCIGCTKCIQACPVDAIVGAT----------RAMHTVITDLCTGCDLCVAPCPTD 159

Query: 117 AIVEGP 122
            I   P
Sbjct: 160 CIEMKP 165


>gi|269139048|ref|YP_003295749.1| electron transport complex protein [Edwardsiella tarda EIB202]
 gi|267984709|gb|ACY84538.1| electron transport complex protein [Edwardsiella tarda EIB202]
 gi|304558980|gb|ADM41644.1| Electron transport complex protein RnfB [Edwardsiella tarda FL6-60]
          Length = 191

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   +             + +   +C  CGLC   CP   I
Sbjct: 112 DEANCIGCTKCIQSCPVDAIVGAT----------RALHTVISDQCTGCGLCLPPCPTSCI 161

Query: 119 VEGPNFEFATETRQEL 134
              P        + +L
Sbjct: 162 QLVPVPTTTATWKWDL 177



 Score = 35.1 bits (79), Expect = 3.0,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C  C ++CPVDAI
Sbjct: 111 IDEANCIGCTKCIQSCPVDAI 131


>gi|262381803|ref|ZP_06074941.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_33B]
 gi|262296980|gb|EEY84910.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_33B]
          Length = 596

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 10/68 (14%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            L +Y    E+C  C LC  +CP  AIT            R + + ID   CI CG C E
Sbjct: 537 ELTQYFINPEKCKGCTLCARVCPVHAITG----------GRKIPHIIDPQACIRCGTCME 586

Query: 112 ACPVDAIV 119
            C   AI 
Sbjct: 587 KCKFGAIY 594



 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 16/40 (40%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +          R   +Y I+  KC  C LC   CPV AI
Sbjct: 524 HVREHRCPSHQCRELTQYFINPEKCKGCTLCARVCPVHAI 563


>gi|257462471|ref|ZP_05626883.1| electron transport complex, RnfABCDGE type, B subunit
           [Fusobacterium sp. D12]
 gi|317060128|ref|ZP_07924613.1| electron transport complex protein [Fusobacterium sp. D12]
 gi|313685804|gb|EFS22639.1| electron transport complex protein [Fusobacterium sp. D12]
          Length = 325

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 28/92 (30%), Gaps = 11/92 (11%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
                  P  K  T      +            CI C +C+  CP  AI + +       
Sbjct: 185 KSVIAMTPAAKKVTVKCMSKDKGGDAKKACGIACIGCGMCQRTCPFGAIEVSNNLA---- 240

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
                   ID  KC  C LC   CP  AI  G
Sbjct: 241 -------KIDPAKCKNCQLCVVVCPTKAIYTG 265



 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 59  GEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIK---CIYCGLCQEAC 113
            EE CI+C LC   CP    A+T  +         +    D        CI CG+CQ  C
Sbjct: 169 DEEACISCGLCVKACPKSVIAMTPAAKKVTVKCMSKDKGGDAKKACGIACIGCGMCQRTC 228

Query: 114 PVDAIVEGPN 123
           P  AI    N
Sbjct: 229 PFGAIEVSNN 238



 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 10/67 (14%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
             + +  C+    CE +CP  AI +                 +D   CI CGLC +ACP 
Sbjct: 136 DKSCKYGCLGYGDCERVCPVGAIVVNEKGIAS----------VDEEACISCGLCVKACPK 185

Query: 116 DAIVEGP 122
             I   P
Sbjct: 186 SVIAMTP 192


>gi|257457105|ref|ZP_05622282.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Treponema
           vincentii ATCC 35580]
 gi|257445484|gb|EEV20550.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Treponema
           vincentii ATCC 35580]
          Length = 1184

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 30/98 (30%), Gaps = 24/98 (24%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
           T    +EK + +                E CI C  C  +CP  AI ++   + +     
Sbjct: 674 TATTQYEKRAIAEHIP--------IWKSELCIQCGQCTVVCPHAAIRMKVYDKSNIDHAP 725

Query: 93  TVRYDIDM----------------IKCIYCGLCQEACP 114
           +    I                    C  CG+C E CP
Sbjct: 726 SAFRSIPYKGKEFDNSLFTIQVSPEDCTGCGICVEQCP 763



 Score = 37.4 bits (85), Expect = 0.69,   Method: Composition-based stats.
 Identities = 9/20 (45%), Positives = 9/20 (45%)

Query: 101 IKCIYCGLCQEACPVDAIVE 120
             CI CG C   CP  AI  
Sbjct: 694 ELCIQCGQCTVVCPHAAIRM 713


>gi|256022939|ref|ZP_05436804.1| putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved
           protein; 4Fe-4S cluster binding protein [Escherichia sp.
           4_1_40B]
 gi|301647151|ref|ZP_07246973.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           MS 146-1]
 gi|301074740|gb|EFK89546.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli
           MS 146-1]
          Length = 1174

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPILKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|225620844|ref|YP_002722102.1| pyruvate oxireductase [Brachyspira hyodysenteriae WA1]
 gi|225215664|gb|ACN84398.1| pyruvate oxireductase [Brachyspira hyodysenteriae WA1]
          Length = 345

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIE--SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
             + CI C  CE +CP   I  E  +  +    T       ID   C  C  C  ACP 
Sbjct: 252 NPKNCIDCANCEVVCPDLCIVWERGTDRKDASKTNVMNMMGIDYQYCKGCLKCVRACPK 310


>gi|224370949|ref|YP_002605113.1| ferredoxin (4Fe-4S iron-sulfur cluster binding protein)
           [Desulfobacterium autotrophicum HRM2]
 gi|223693666|gb|ACN16949.1| ferredoxin (4Fe-4S iron-sulfur cluster binding protein)
           [Desulfobacterium autotrophicum HRM2]
          Length = 361

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 23/66 (34%), Gaps = 12/66 (18%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 E C AC+ C   C   AI I                     +CI CGLC   CP
Sbjct: 270 WAVVDPEECTACETCLDRCQMNAIEIGDAAVVDH------------ARCIGCGLCVTTCP 317

Query: 115 VDAIVE 120
           VDAI  
Sbjct: 318 VDAIRL 323



 Score = 34.3 bits (77), Expect = 5.6,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 22/65 (33%), Gaps = 4/65 (6%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           N    C  C  C  +    A+ +   P      R     D    +C  C  C + C ++A
Sbjct: 237 NPGGMCNCCGDCCGVLR--ALNMLPNPGELVHNRYWAVVD--PEECTACETCLDRCQMNA 292

Query: 118 IVEGP 122
           I  G 
Sbjct: 293 IEIGD 297


>gi|183599240|ref|ZP_02960733.1| hypothetical protein PROSTU_02699 [Providencia stuartii ATCC 25827]
 gi|188021470|gb|EDU59510.1| hypothetical protein PROSTU_02699 [Providencia stuartii ATCC 25827]
          Length = 208

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 22/64 (34%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            EE CI C  C   CP  AI   +             + +    C  C LC   CP D I
Sbjct: 113 DEENCIGCTKCIQACPVDAIVGAT----------RAMHTVIEDLCTGCDLCVAPCPTDCI 162

Query: 119 VEGP 122
              P
Sbjct: 163 ELVP 166



 Score = 36.2 bits (82), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C  C +ACPVDAI
Sbjct: 112 IDEENCIGCTKCIQACPVDAI 132


>gi|270308709|ref|YP_003330767.1| reductive dehalogenase [Dehalococcoides sp. VS]
 gi|270154601|gb|ACZ62439.1| reductive dehalogenase [Dehalococcoides sp. VS]
          Length = 480

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 22/73 (30%), Gaps = 2/73 (2%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRR--TVRYDIDMIKCIYCGLCQEACPVDA 117
              C  CK C   C   A+         D  +      Y I    C++C  CQ  CP   
Sbjct: 365 YRFCKTCKKCAESCVFNALPFGDPSWDADFYQPTGFEGYRIVTRLCVFCMACQAVCPFTE 424

Query: 118 IVEGPNFEFATET 130
           +      +    T
Sbjct: 425 LHGSFIHQLVKFT 437


>gi|182418369|ref|ZP_02949664.1| pyruvate:ferredoxin oxidoreductase [Clostridium butyricum 5521]
 gi|237666489|ref|ZP_04526474.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|154744868|gb|ABS84951.1| pyruvate ferredoxin oxidoreductase [Clostridium butyricum]
 gi|182377751|gb|EDT75295.1| pyruvate:ferredoxin  oxidoreductase [Clostridium butyricum 5521]
 gi|237657688|gb|EEP55243.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 1169

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 32/105 (30%), Gaps = 20/105 (19%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE---------------- 81
           FE G+ +   RG        +   +CI C  C  +CP  AI                   
Sbjct: 665 FEAGTAAFEKRGIAVNVPEWD-SAKCIQCNQCALVCPHAAIRPILVNEDEKAKAPASAKI 723

Query: 82  -SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD--AIVEGPN 123
                     +      +  + C  CG C + CP    A+V  P 
Sbjct: 724 VDAKALKSEEKLYYSMAVTPLDCSGCGNCAQICPAPGKALVMKPQ 768


>gi|149923332|ref|ZP_01911740.1| Fe-S-cluster-containing hydrogenase [Plesiocystis pacifica SIR-1]
 gi|149815812|gb|EDM75334.1| Fe-S-cluster-containing hydrogenase [Plesiocystis pacifica SIR-1]
          Length = 1157

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/112 (16%), Positives = 28/112 (25%), Gaps = 17/112 (15%)

Query: 29  KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88
           K+  +   P    + +                  C +C  C   C A+      G +   
Sbjct: 877 KSPWSRYDPETHPTLAVPVLTGPHQWGMAVDLNTCTSCNACVIACQAENNIPVVGKKEAA 936

Query: 89  GTRRTVRYDI---------------DMIKCIYC--GLCQEACPVDAIVEGPN 123
             R      I                 + C +C    C+  CPV A    P 
Sbjct: 937 NGRELHWIRIDRYYVGDGDDPDAVVMPVACQHCETAPCENVCPVQATAHSPE 988


>gi|123442365|ref|YP_001006344.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122089326|emb|CAL12174.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 1177

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/138 (17%), Positives = 33/138 (23%), Gaps = 36/138 (26%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A        + C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSAFPPDGTWPVGTTQWEKRNIAEDIPIWQPDLCTQCNHCVAAC 699

Query: 74  PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           P  A                   ++E   R   G +      +    C  C LC E CP 
Sbjct: 700 PHSAIRAKVVQPDAMSGAPDSLQSLEVKARDMRGQKY--VLQVAPEDCTGCNLCYEVCPA 757

Query: 116 --------DAIVEGPNFE 125
                    AI   P  E
Sbjct: 758 KDRQNPEIKAINMKPRLE 775


>gi|116235058|dbj|BAF34978.1| trichloroethene reductive dehalogenase [uncultured Dehalococcoides
           sp.]
          Length = 554

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 3/60 (5%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID---MIKCIYCGLCQEACPVD 116
            E C  C +C   CP QAI+ E              Y+       KCI C  C+  CP  
Sbjct: 434 REFCKTCGICAEHCPNQAISHEGPRYDSPYWDNVSGYEGWHLDYHKCINCTNCETFCPFF 493


>gi|91793220|ref|YP_562871.1| electron transport complex protein RnfC [Shewanella denitrificans
           OS217]
 gi|91715222|gb|ABE55148.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella
           denitrificans OS217]
          Length = 731

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 40/105 (38%), Gaps = 20/105 (19%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114
            E+ CI C  C   CPA        P+      +   YD     ++  CI CG C   CP
Sbjct: 379 EEKACIRCGECAVACPA-----LLLPQQLFWHAKAEEYDKAASFNLKDCIECGCCSYVCP 433

Query: 115 VDAIVEGPNFEFAT-----ETRQELYYDKERLLNNGDRWESEIVR 154
              I     +  A      ET ++L  +K +      R+E+ + R
Sbjct: 434 -SDIPLVEYYRVAKSAIRLETEEKLQAEKAK-----QRFETRLQR 472


>gi|82523738|emb|CAI78738.1| predicted NADH:ubiquinone oxidoreductase, subunit RfnC [uncultured
           gamma proteobacterium]
          Length = 671

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/120 (20%), Positives = 41/120 (34%), Gaps = 3/120 (2%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
             P  K +       +  L   P   + CI C +C   CP   +  +       G     
Sbjct: 342 RVPIVKTTNCLLAPTDAEL-PLPPPAQACIRCGMCAEACPVS-LLPQQLFWFAQGKEYEK 399

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVR 154
               ++  CI CG C  ACP   I     +  +      L  + E+  ++  R+E+   R
Sbjct: 400 LEGHNLFDCIECGACSYACP-SNIPLVQYYRASKAEILHLRREHEKAEHSRIRFETRQKR 458


>gi|325288996|ref|YP_004265177.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964397|gb|ADY55176.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 427

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 6/60 (10%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C+ C  C  +CP  AI+                  +D   C+ CG+C  +CP +A+  
Sbjct: 292 QECVGCGKCAEVCPVLAISRPDNKEG------RTAVQVDHEVCLGCGVCVRSCPKNAVEF 345



 Score = 39.7 bits (91), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/23 (52%), Positives = 13/23 (56%)

Query: 103 CIYCGLCQEACPVDAIVEGPNFE 125
           C+ CG C E CPV AI    N E
Sbjct: 294 CVGCGKCAEVCPVLAISRPDNKE 316


>gi|325280681|ref|YP_004253223.1| 4Fe-4S iron-sulfur binding protein (ferredoxin) [Odoribacter
           splanchnicus DSM 20712]
 gi|324312490|gb|ADY33043.1| 4Fe-4S iron-sulfur binding protein (ferredoxin) [Odoribacter
           splanchnicus DSM 20712]
          Length = 273

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 13/77 (16%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
           + L+  P   + CI C+ C  +CP  AI ++                     CI C  C 
Sbjct: 192 NFLKAKPVTTDACIDCRRCAKVCPMGAIRLD-------------HPSEVSGICIKCNACV 238

Query: 111 EACPVDAIVEGPNFEFA 127
           + CPV A         +
Sbjct: 239 KQCPVHAKQLTDEAYLS 255



 Score = 34.7 bits (78), Expect = 4.0,   Method: Composition-based stats.
 Identities = 10/50 (20%), Positives = 16/50 (32%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
             +   R  +         +    CI C  C + CP+ AI      E + 
Sbjct: 180 YYKPKGRDEEVVNFLKAKPVTTDACIDCRRCAKVCPMGAIRLDHPSEVSG 229


>gi|317490640|ref|ZP_07949110.1| NapH/MauN family ferredoxin-type protein [Eggerthella sp.
           1_3_56FAA]
 gi|325831513|ref|ZP_08164767.1| ferredoxin-type protein, NapH/MauN family [Eggerthella sp. HGA1]
 gi|316910264|gb|EFV31903.1| NapH/MauN family ferredoxin-type protein [Eggerthella sp.
           1_3_56FAA]
 gi|325486767|gb|EGC89215.1| ferredoxin-type protein, NapH/MauN family [Eggerthella sp. HGA1]
          Length = 298

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 23/73 (31%), Gaps = 7/73 (9%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G             CI C  C+  C +    +E      D   R          C+ CG 
Sbjct: 219 GRFGQVNVKIDPAACIHCDACKHACLSDPAILEPALDGCDAIVR-------AGDCMACGS 271

Query: 109 CQEACPVDAIVEG 121
           C +ACP  A+   
Sbjct: 272 CIDACPTRALSFT 284


>gi|297526779|ref|YP_003668803.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Staphylothermus hellenicus DSM 12710]
 gi|297255695|gb|ADI31904.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Staphylothermus hellenicus DSM 12710]
          Length = 161

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 37/91 (40%), Gaps = 23/91 (25%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV---- 119
           I C +C  ICP  AI +E         +      I+  KCI CG+C   CP  AI     
Sbjct: 40  IPCNICANICPFNAIEME---------KIYDLPRINPDKCIGCGVCVPQCPGLAIFVVDL 90

Query: 120 -------EGPNFEFATETRQELYYDKERLLN 143
                      +EF  E R+ L   K +LL+
Sbjct: 91  SKPGKALITLPYEFLPEPRKGL---KVKLLD 118


>gi|240103186|ref|YP_002959495.1| Indolepyruvate ferredoxin oxidoreductase alpha subunit (iorA)
           [Thermococcus gammatolerans EJ3]
 gi|239910740|gb|ACS33631.1| Indolepyruvate ferredoxin oxidoreductase alpha subunit (iorA)
           [Thermococcus gammatolerans EJ3]
          Length = 658

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 9/65 (13%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ++C  CK C  +    A+  +             +  ID + C  CG+C + CP DAI  
Sbjct: 600 DKCTGCKACILLTGCPALVYDPETN---------KVRIDSLLCTGCGVCNQTCPFDAIKF 650

Query: 121 GPNFE 125
               E
Sbjct: 651 PSELE 655


>gi|166032053|ref|ZP_02234882.1| hypothetical protein DORFOR_01755 [Dorea formicigenerans ATCC
           27755]
 gi|166027776|gb|EDR46533.1| hypothetical protein DORFOR_01755 [Dorea formicigenerans ATCC
           27755]
          Length = 625

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 27/67 (40%), Gaps = 10/67 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           LR Y    E+C  C  C   CP  AIT           +    Y ID  KCI CG C E 
Sbjct: 567 LRNYKINPEKCKGCSKCARNCPVGAITG----------KIKSPYVIDSAKCIKCGACLEN 616

Query: 113 CPVDAIV 119
           C   A+ 
Sbjct: 617 CSFGAVY 623


>gi|163802833|ref|ZP_02196722.1| electron transport complex protein RnfB [Vibrio sp. AND4]
 gi|159173373|gb|EDP58196.1| electron transport complex protein RnfB [Vibrio sp. AND4]
          Length = 197

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 29/92 (31%), Gaps = 11/92 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
            +   S               E+ CI C  C   CP  AI   +             + +
Sbjct: 90  VEVEESAHDLDNKVKTVAFIHEDMCIGCTKCIQACPVDAIVGGTK----------ALHTV 139

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
              +C  C LC   CP D I   P  E  TE+
Sbjct: 140 IKDECTGCDLCVSPCPTDCIEMIPV-ETTTES 170


>gi|156936833|ref|YP_001434629.1| ATPase RIL [Ignicoccus hospitalis KIN4/I]
 gi|156565817|gb|ABU81222.1| ABC transporter related [Ignicoccus hospitalis KIN4/I]
          Length = 604

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 23/72 (31%), Gaps = 1/72 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +E C     C   C       ++G           +  I  + C  CG+C + CP  AI
Sbjct: 12  DKELCKP-DKCNYECIRFCPINKTGRNKAIELGEDGKPIIHELVCTGCGICIKKCPFQAI 70

Query: 119 VEGPNFEFATET 130
                 E   E 
Sbjct: 71  HIENLPEEVEEK 82


>gi|150007688|ref|YP_001302431.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides distasonis
           ATCC 8503]
 gi|255013607|ref|ZP_05285733.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_7]
 gi|149936112|gb|ABR42809.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides distasonis
           ATCC 8503]
          Length = 596

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 10/68 (14%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            L +Y    E+C  C LC  +CP  AIT            R + + ID   CI CG C E
Sbjct: 537 ELTQYFINPEKCKGCTLCARVCPVHAITG----------GRKIPHIIDPQACIRCGTCME 586

Query: 112 ACPVDAIV 119
            C   AI 
Sbjct: 587 KCKFGAIY 594



 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 16/40 (40%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +          R   +Y I+  KC  C LC   CPV AI
Sbjct: 524 HVREHRCPSHQCRELTQYFINPEKCKGCTLCARVCPVHAI 563


>gi|148643126|ref|YP_001273639.1| energy-converting hydrogenase B, subunit K, EhbK
           [Methanobrevibacter smithii ATCC 35061]
 gi|222445363|ref|ZP_03607878.1| hypothetical protein METSMIALI_00991 [Methanobrevibacter smithii
           DSM 2375]
 gi|261350076|ref|ZP_05975493.1| polyferredoxin [Methanobrevibacter smithii DSM 2374]
 gi|148552143|gb|ABQ87271.1| energy-converting hydrogenase B, subunit K, EhbK
           [Methanobrevibacter smithii ATCC 35061]
 gi|222434928|gb|EEE42093.1| hypothetical protein METSMIALI_00991 [Methanobrevibacter smithii
           DSM 2375]
 gi|288860862|gb|EFC93160.1| polyferredoxin [Methanobrevibacter smithii DSM 2374]
          Length = 471

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 11/91 (12%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93
           +  P      +   + E         ++ C+ C LC  ICP  AI   +G          
Sbjct: 385 VYCPVNAIPRTTMHKKEIVDGFCFIEQQLCMHCGLCYDICPYDAINKNNGK--------- 435

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
             +++D  KC YCG C+ ACP +A +   NF
Sbjct: 436 --FEVDEDKCKYCGACKNACPANAFMFERNF 464



 Score = 41.6 bits (96), Expect = 0.034,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++CI C+ C   CP  AI   +  +            I+   C++CGLC + CP DAI
Sbjct: 373 DLDKCILCENCGVYCPVNAIPRTTMHKKEIVDGFCF---IEQQLCMHCGLCYDICPYDAI 429

Query: 119 V 119
            
Sbjct: 430 N 430



 Score = 40.1 bits (92), Expect = 0.10,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 11/77 (14%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R         +  + CI+C +C  +CP +AIT+  G              +D+ KCI C 
Sbjct: 333 RLFKVATWDGSITDECISCGICCEVCPKEAITLHRG-----------TISVDLDKCILCE 381

Query: 108 LCQEACPVDAIVEGPNF 124
            C   CPV+AI      
Sbjct: 382 NCGVYCPVNAIPRTTMH 398



 Score = 38.9 bits (89), Expect = 0.24,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 10/60 (16%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C++C  C  +C   A             +          +CI CG+C E CP +AI   
Sbjct: 317 FCVSCGNCVKVCENDARLF----------KVATWDGSITDECISCGICCEVCPKEAITLH 366



 Score = 37.4 bits (85), Expect = 0.68,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 33/108 (30%), Gaps = 13/108 (12%)

Query: 28  FKAKTTINYPFEKGSTSPRFRGEHALRRYPN-GEERCIACKLCEAICPAQAITIESGPRC 86
           F    +   P  KG            R Y     +RCI C  CE  CP   I +      
Sbjct: 118 FIKSLSNALPTYKGVPHKPSETTEVTRSYFTTDYDRCIYCGRCEKYCPTGTIQVTLDRDE 177

Query: 87  HDGTRRTVRYDIDM------------IKCIYCGLCQEACPVDAIVEGP 122
              +   +  D+                C  C  C +ACP +AI  G 
Sbjct: 178 GICSDCGLCSDVCPNGAMNKNHIVNKSTCTLCLNCLKACPHNAISIGK 225



 Score = 35.1 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 16/80 (20%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           Y     +C  C +C   CP   I IE G              I    C  CG+C+EACP 
Sbjct: 56  YVVDRAKCSGCGMCMYNCPIDNIKIEDG--------------IVYGICSRCGVCEEACPS 101

Query: 116 DAIVEGPNFEFATETRQELY 135
           ++ ++   F    E + E  
Sbjct: 102 NSRIDS--FRLTEEKQLEFI 119



 Score = 35.1 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 23/96 (23%), Gaps = 25/96 (26%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQ-------------------------AITIESGPR 85
           +           C  C +CE  CP+                                   
Sbjct: 77  NIKIEDGIVYGICSRCGVCEEACPSNSRIDSFRLTEEKQLEFIKSLSNALPTYKGVPHKP 136

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
                     +  D  +CIYCG C++ CP   I   
Sbjct: 137 SETTEVTRSYFTTDYDRCIYCGRCEKYCPTGTIQVT 172



 Score = 33.5 bits (75), Expect = 9.2,   Method: Composition-based stats.
 Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 10/72 (13%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            A+R        C+ C LC   CP+ AI I S             Y +D  KC  CG+C 
Sbjct: 21  KAIRLINGKALSCLTCGLCYKNCPSNAIFINS----------YGGYVVDRAKCSGCGMCM 70

Query: 111 EACPVDAIVEGP 122
             CP+D I    
Sbjct: 71  YNCPIDNIKIED 82


>gi|121534125|ref|ZP_01665950.1| hydrogenases, Fe-only [Thermosinus carboxydivorans Nor1]
 gi|121307228|gb|EAX48145.1| hydrogenases, Fe-only [Thermosinus carboxydivorans Nor1]
          Length = 574

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 59  GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQEACPV 115
              +CI C  C   C   Q + + S       T     ++  +  + C YCG C   CP 
Sbjct: 144 DPSKCILCGRCIRACSERQGVHVYSFVNRGFNTTVAPAFNQGLHQVACTYCGQCASVCPT 203

Query: 116 DAIVEGPN 123
            AIVE  +
Sbjct: 204 GAIVEKDD 211


>gi|170728253|ref|YP_001762279.1| formate dehydrogenase subunit alpha [Shewanella woodyi ATCC 51908]
 gi|169813600|gb|ACA88184.1| formate dehydrogenase, alpha subunit [Shewanella woodyi ATCC 51908]
          Length = 924

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 3/64 (4%)

Query: 59  GEERCIACKLCEAIC---PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
             + CI C LC   C       +   +              ++    C+ CG C + CP 
Sbjct: 148 NLDACIQCNLCVRACREVQVNDVIGMANRGRDSAIIFDQSDEMAESSCVACGECVQVCPT 207

Query: 116 DAIV 119
           DA++
Sbjct: 208 DALM 211


>gi|222053329|ref|YP_002535691.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32]
 gi|221562618|gb|ACM18590.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32]
          Length = 634

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 15/94 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            +RY F+ +   +   +K            L  +    ++C AC  C   CPA+AI    
Sbjct: 533 TIRY-FREEYEAHIRHKKCPALSC----KELIAFHIQPDKCKACGTCFKQCPAEAIEG-- 585

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
                    +   + ID  KC  CG C + CP  
Sbjct: 586 --------GKKRIHIIDQDKCTKCGTCLDVCPKQ 611



 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/44 (27%), Positives = 17/44 (38%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            I          +  + + I   KC  CG C + CP +AI  G 
Sbjct: 544 HIRHKKCPALSCKELIAFHIQPDKCKACGTCFKQCPAEAIEGGK 587


>gi|303245642|ref|ZP_07331925.1| NADH dehydrogenase (quinone) [Desulfovibrio fructosovorans JJ]
 gi|302492905|gb|EFL52770.1| NADH dehydrogenase (quinone) [Desulfovibrio fructosovorans JJ]
          Length = 491

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 10/67 (14%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           AL  Y     +C  C LC  +CP + I+                + ID  +CI CG C +
Sbjct: 432 ALLTYTIDPAKCTGCGLCTRVCPVECISGTKKQP----------HTIDTTRCIKCGACYD 481

Query: 112 ACPVDAI 118
            C  D+I
Sbjct: 482 KCKFDSI 488



 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 17/44 (38%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            ++            + Y ID  KC  CGLC   CPV+ I    
Sbjct: 419 HVDDKKCPAHVCTALLTYTIDPAKCTGCGLCTRVCPVECISGTK 462


>gi|227828793|ref|YP_002830573.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus M.14.25]
 gi|227460589|gb|ACP39275.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus M.14.25]
          Length = 87

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 25/75 (33%), Gaps = 11/75 (14%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G   + +       CI CK C   CP   I   +G              +D   C  CG+
Sbjct: 23  GAWRIVKPVVDYNNCIGCKACFMFCPESTIVPSNGKV-----------RVDYEYCKGCGV 71

Query: 109 CQEACPVDAIVEGPN 123
           C   CPV AI     
Sbjct: 72  CANVCPVKAISMVNE 86


>gi|218780441|ref|YP_002431759.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761825|gb|ACL04291.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 301

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 12/69 (17%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
              + R+   ++ CI C  CE +CP   I I + P                  CIYC +C
Sbjct: 189 PKIMPRFAINQDECIQCGQCEDLCPVDGIDISADPPK------------IQDPCIYCFMC 236

Query: 110 QEACPVDAI 118
            ++CP  AI
Sbjct: 237 AKSCPECAI 245



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 20/50 (40%)

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
             P  A             +   R+ I+  +CI CG C++ CPVD I   
Sbjct: 171 HIPDWAQKDRVNLSREIMPKIMPRFAINQDECIQCGQCEDLCPVDGIDIS 220


>gi|194292239|ref|YP_002008146.1| tugsten containing formate dehydrogenase alpha subunit; 2fe-2S
           ferredoxin n-term domain [Cupriavidus taiwanensis LMG
           19424]
 gi|193226143|emb|CAQ72090.1| tugsten containing formate dehydrogenase alpha subunit; 2Fe-2S
           ferredoxin N-term domain [Cupriavidus taiwanensis LMG
           19424]
          Length = 940

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 5/78 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID----MIKCIYCGLCQEACP 114
             + CI C  C   C  +    +       G    + +D+D       C+ CG C +ACP
Sbjct: 154 NLDACIQCTRCLRACRDE-QVNDVIGLALRGDDARIVFDMDDPMGASTCVACGECVQACP 212

Query: 115 VDAIVEGPNFEFATETRQ 132
             A++   +   A   +Q
Sbjct: 213 TGALMPARDAALAVPDKQ 230


>gi|169335115|ref|ZP_02862308.1| hypothetical protein ANASTE_01522 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257853|gb|EDS71819.1| hypothetical protein ANASTE_01522 [Anaerofustis stercorihominis DSM
           17244]
          Length = 1180

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 25/77 (32%), Gaps = 14/77 (18%)

Query: 60  EERCIACKLCEAICPAQAITI-----ESGPRCHDGTRRTV-------RYDIDMIKCIYCG 107
            E C+ C  C  +CP   I       E        T +            I  + C  CG
Sbjct: 694 HENCMQCNWCSYVCPHGVIRPFVLDSEEAEGFEGTTVKMKGVKNNLFTMGISALDCSGCG 753

Query: 108 LCQEACPVD--AIVEGP 122
           LC E CP    A+   P
Sbjct: 754 LCVEVCPARNKALQMVP 770


>gi|170288544|ref|YP_001738782.1| hydrogenase, Fe-only [Thermotoga sp. RQ2]
 gi|170176047|gb|ACB09099.1| hydrogenase, Fe-only [Thermotoga sp. RQ2]
          Length = 582

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 3/65 (4%)

Query: 59  GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDI--DMIKCIYCGLCQEACPV 115
              +CI C+ C   C   Q + I S       T     +D+      CI CG C   CP 
Sbjct: 144 DLSKCIKCQRCVRACSELQGMHIYSMVERGHRTYPGTPFDMPVYETDCIGCGQCAAFCPT 203

Query: 116 DAIVE 120
            AIVE
Sbjct: 204 GAIVE 208


>gi|153812328|ref|ZP_01964996.1| hypothetical protein RUMOBE_02727 [Ruminococcus obeum ATCC 29174]
 gi|149831490|gb|EDM86577.1| hypothetical protein RUMOBE_02727 [Ruminococcus obeum ATCC 29174]
          Length = 1178

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 21/71 (29%), Gaps = 14/71 (19%)

Query: 58  NGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTR---------RTVRYDIDMIKC 103
              E CI C  C  +CP  AI     T E      +G                 +    C
Sbjct: 689 WQPENCIQCNRCAYVCPHAAIRPVALTEEEAANAPEGMATLPMTGMKDYKFTMTVSAYDC 748

Query: 104 IYCGLCQEACP 114
             CG C   CP
Sbjct: 749 TGCGSCANVCP 759



 Score = 34.7 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 8/20 (40%), Positives = 8/20 (40%)

Query: 99  DMIKCIYCGLCQEACPVDAI 118
               CI C  C   CP  AI
Sbjct: 690 QPENCIQCNRCAYVCPHAAI 709


>gi|126734057|ref|ZP_01749804.1| formate dehydrogenase, alpha subunit [Roseobacter sp. CCS2]
 gi|126716923|gb|EBA13787.1| formate dehydrogenase, alpha subunit [Roseobacter sp. CCS2]
          Length = 922

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 5/64 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID----MIKCIYCGLCQEACP 114
             + CI C LC   C  +    +       G      +D+D       C+ CG C +ACP
Sbjct: 147 NLDACIQCGLCVRACR-EVQVNDVIGMAGRGGTAYPVFDMDDPMGASSCVACGECVQACP 205

Query: 115 VDAI 118
             A+
Sbjct: 206 TGAL 209


>gi|110834471|ref|YP_693330.1| electron transport complex protein RnfB [Alcanivorax borkumensis
           SK2]
 gi|122959433|sp|Q0VP40|RNFB_ALCBS RecName: Full=Electron transport complex protein rnfB; AltName:
           Full=Nitrogen fixation protein rnfB
 gi|110647582|emb|CAL17058.1| electron transport complex protein rnfB, putative [Alcanivorax
           borkumensis SK2]
          Length = 194

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 10/64 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E+ CI C  C   CP  AI   +           + + + + +C  C LC E CPVD
Sbjct: 110 YIREDECIGCTKCIQACPVDAIVGAAK----------LMHTVIVDECTGCDLCVEPCPVD 159

Query: 117 AIVE 120
            I  
Sbjct: 160 CIDM 163


>gi|160878761|ref|YP_001557729.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing
           protein [Clostridium phytofermentans ISDg]
 gi|160427427|gb|ABX40990.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Clostridium phytofermentans ISDg]
          Length = 1178

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 27/94 (28%), Gaps = 19/94 (20%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITI----------------ESGPRCHDGTR 91
           RG           ERCI C  C  ICP   I                    G        
Sbjct: 675 RGIAVNVPEWI-VERCIQCNQCSYICPHSVIRPFLLNEEELAKAPDTFVTKGASGKAYEG 733

Query: 92  RTVRYDIDMIKCIYCGLCQEACPV--DAIVEGPN 123
              +  I  + C  CG C + CP    A++  P 
Sbjct: 734 LQFKIQISPMDCTGCGNCADVCPAKGKALIMQPI 767


>gi|77920299|ref|YP_358114.1| NADH dehydrogenase I subunit F [Pelobacter carbinolicus DSM 2380]
 gi|77546382|gb|ABA89944.1| NADH dehydrogenase subunit F [Pelobacter carbinolicus DSM 2380]
          Length = 488

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 10/66 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           LR++   +++C+ C LC  ICP + I+ +              + ID  KCI CG CQ+ 
Sbjct: 430 LRQFVILKDKCVGCTLCAKICPVECISGQ----------VKQPHVIDQSKCIKCGACQDK 479

Query: 113 CPVDAI 118
           C  +AI
Sbjct: 480 CKFEAI 485



 Score = 38.9 bits (89), Expect = 0.22,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 17/40 (42%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            I+             ++ I   KC+ C LC + CPV+ I
Sbjct: 416 HIKEKRCPAGVCTHLRQFVILKDKCVGCTLCAKICPVECI 455


>gi|83311089|ref|YP_421353.1| pyruvate-flavodoxin oxidoreductase [Magnetospirillum magneticum
           AMB-1]
 gi|82945930|dbj|BAE50794.1| Pyruvate-flavodoxin oxidoreductase [Magnetospirillum magneticum
           AMB-1]
          Length = 1198

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 21/83 (25%), Gaps = 16/83 (19%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAIC--------------PAQAITIESGPRCHDGTRRT 93
           R   A       E  CI C  C  +C               A A              + 
Sbjct: 682 RRNIAAEIPVWDEGPCIQCNKCALVCPHAAIRAKVAEPADMADAPASLKRMDWRSPEFKG 741

Query: 94  VRYDID--MIKCIYCGLCQEACP 114
             Y I      C  C LC + CP
Sbjct: 742 SAYIIQVAPEDCTGCTLCVKVCP 764


>gi|41018397|sp|Q50849|VHCB_METVO RecName: Full=Polyferredoxin protein vhcB
 gi|44795|emb|CAA43507.1| polyferredoxin [Methanococcus voltae PS]
          Length = 157

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 25/66 (37%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
              E+C  C  C   CP  AI + +       +R       +   C  CG C  ACP +A
Sbjct: 27  WDREKCEYCGPCAIKCPNDAIMVVNPKGLELPSRAKTERANEFKMCDLCGTCVSACPTEA 86

Query: 118 IVEGPN 123
           +  G  
Sbjct: 87  LQMGKI 92



 Score = 40.1 bits (92), Expect = 0.099,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           N  + C  C  C + CP +A+ +    +     +   R +     C  CG C E CP + 
Sbjct: 67  NEFKMCDLCGTCVSACPTEALQM---GKIVHNEKEYDRIEFTPSLCDSCGACVEICPQNV 123

Query: 118 IVEGPNF 124
           +     +
Sbjct: 124 LKLNEEY 130


>gi|113461203|ref|YP_719272.1| electron transport complex protein RnfB [Haemophilus somnus 129PT]
 gi|112823246|gb|ABI25335.1| electron transport complex protein [Haemophilus somnus 129PT]
          Length = 196

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 25/80 (31%), Gaps = 10/80 (12%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
            +  F  +   +     E+ CI C  C   CP  AI   +             + I    
Sbjct: 93  PAGNFEKDPLPKVAFIDEDMCIGCTKCIQACPVDAIIGTNK----------AMHTIIADL 142

Query: 103 CIYCGLCQEACPVDAIVEGP 122
           C  C LC   CP D I    
Sbjct: 143 CTGCELCVAPCPTDCISMIN 162


>gi|329766146|ref|ZP_08257705.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329137417|gb|EGG41694.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 99

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 1/68 (1%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C LC  IC      +        G +R   +     +CI  G C   CP  AI  
Sbjct: 12  QMCIGCALCVEICTTLGPDVLRVKPVE-GWKRGKAFVFYPERCISDGACIGVCPTKAIFW 70

Query: 121 GPNFEFAT 128
               +F  
Sbjct: 71  MRPMDFTV 78


>gi|323139722|ref|ZP_08074761.1| ferredoxin [Methylocystis sp. ATCC 49242]
 gi|322395028|gb|EFX97590.1| ferredoxin [Methylocystis sp. ATCC 49242]
          Length = 243

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/132 (22%), Positives = 47/132 (35%), Gaps = 7/132 (5%)

Query: 1   MRIFRCNVSFLFLKEF----VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRY 56
           +R  R  V  L+L +F    +   +  L    KA+    +P+  G        + +   +
Sbjct: 101 LRRLRKGVLELYLSDFPESELEGGWSELHESLKAEGVETHPYGGGKNHFDAPVDQSNPYF 160

Query: 57  PNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                +CI C  C   C     T     +G                  +C+ CG C +AC
Sbjct: 161 LFDPAKCIVCSRCVRACAEVQGTFAITIAGRGFESKVVAGQEQPFFESECVSCGACVQAC 220

Query: 114 PVDAIVEGPNFE 125
           P  A+VE   FE
Sbjct: 221 PSHALVEKSLFE 232


>gi|315923881|ref|ZP_07920109.1| anaerobic sulfite reductase subunit C [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315622721|gb|EFV02674.1| anaerobic sulfite reductase subunit C [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 325

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 22/81 (27%), Gaps = 8/81 (9%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
                  G   +        RC++C+ C   C                +        +  
Sbjct: 151 KVRMHDFGVMGMTLPQFDASRCVSCQACVKRCR--------KKSTGALSFDHFTPVRNHE 202

Query: 102 KCIYCGLCQEACPVDAIVEGP 122
           KCI CG C  ACP  A     
Sbjct: 203 KCIGCGECVLACPTRAWTRSD 223


>gi|312887264|ref|ZP_07746867.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Mucilaginibacter
           paludis DSM 18603]
 gi|311300222|gb|EFQ77288.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Mucilaginibacter
           paludis DSM 18603]
          Length = 1191

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 21/74 (28%), Gaps = 16/74 (21%)

Query: 58  NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY--DIDMI 101
              + CI C  C  +CP                A         +       RY   +   
Sbjct: 692 WDADNCIQCGNCSFVCPHGVIRSKFYHQDYLADAPEDFQSSPINARGFPQTRYTLQVYAE 751

Query: 102 KCIYCGLCQEACPV 115
            C  C LC E CPV
Sbjct: 752 DCTGCNLCAEVCPV 765


>gi|304436735|ref|ZP_07396703.1| pyruvate:ferredoxin oxidoreductase [Selenomonas sp. oral taxon 149
           str. 67H29BP]
 gi|304370215|gb|EFM23872.1| pyruvate:ferredoxin oxidoreductase [Selenomonas sp. oral taxon 149
           str. 67H29BP]
          Length = 1175

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 26/84 (30%), Gaps = 14/84 (16%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQ--------------AITIESGPRCHDGTRRTVRYD 97
           A+       E+CI C  C  +CP                A       +        +   
Sbjct: 680 AISVPVWRPEKCIQCNQCSFVCPHATIRPILTTDEELAAAPEGMQSVKSRPAKGMNLTIA 739

Query: 98  IDMIKCIYCGLCQEACPVDAIVEG 121
           +  + C+ CG C + CP  A+   
Sbjct: 740 VSTLDCLGCGNCAQVCPGKALDMT 763


>gi|302335612|ref|YP_003800819.1| hydrogenase, Fe-only [Olsenella uli DSM 7084]
 gi|301319452|gb|ADK67939.1| hydrogenase, Fe-only [Olsenella uli DSM 7084]
          Length = 587

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 23/70 (32%), Gaps = 3/70 (4%)

Query: 59  GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115
              +CI C  C  +C   QA  I             V          C YCG C   CP 
Sbjct: 141 ENHKCIDCMRCVQVCDKVQASRIWDATSRSTHRTVNVVGGRSFDDVDCTYCGQCITHCPT 200

Query: 116 DAIVEGPNFE 125
            A+ E  + E
Sbjct: 201 GALRERDDTE 210


>gi|291545759|emb|CBL18867.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric
           [Ruminococcus sp. SR1/5]
          Length = 1181

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 32/101 (31%), Gaps = 17/101 (16%)

Query: 28  FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA-----ITIES 82
           FK       P   G+ +   RG           + CI C  C  +CP  A     +T + 
Sbjct: 662 FKDYVDGTTP--SGTAAYEKRGIAVNVPVWV-PDNCIQCNRCAYVCPHAAIRPVAMTADE 718

Query: 83  GPRCHDGTR---------RTVRYDIDMIKCIYCGLCQEACP 114
                +G +          T    +  + C  CG C   CP
Sbjct: 719 TANAPEGIKTLPLTGMKDYTFTMTVSALDCTGCGSCANVCP 759



 Score = 34.7 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 8/19 (42%)

Query: 100 MIKCIYCGLCQEACPVDAI 118
              CI C  C   CP  AI
Sbjct: 691 PDNCIQCNRCAYVCPHAAI 709


>gi|238926214|ref|ZP_04657974.1| pyruvate synthase [Selenomonas flueggei ATCC 43531]
 gi|238885894|gb|EEQ49532.1| pyruvate synthase [Selenomonas flueggei ATCC 43531]
          Length = 1175

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/84 (19%), Positives = 26/84 (30%), Gaps = 14/84 (16%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQ--------------AITIESGPRCHDGTRRTVRYD 97
           A+       E+CI C  C  +CP                A       +        +   
Sbjct: 680 AISVPVWRPEKCIQCNQCSFVCPHATIRPILTTDEELAAAPEGMQSVKSRPAKGMNLTIA 739

Query: 98  IDMIKCIYCGLCQEACPVDAIVEG 121
           +  + C+ CG C + CP  A+   
Sbjct: 740 VSTLDCLGCGNCAQVCPGKALDMT 763


>gi|167761283|ref|ZP_02433410.1| hypothetical protein CLOSCI_03688 [Clostridium scindens ATCC 35704]
 gi|167660949|gb|EDS05079.1| hypothetical protein CLOSCI_03688 [Clostridium scindens ATCC 35704]
          Length = 604

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 11/70 (15%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           Y    + C  C+ C       AI IE G              I+   C  CG+C + C  
Sbjct: 546 YHVAADSCTFCRQCIRELGCPAIVIEDGKAA-----------IEPSLCSGCGICAQVCKF 594

Query: 116 DAIVEGPNFE 125
           +AI E  + E
Sbjct: 595 NAIQEVDHDE 604


>gi|114776889|ref|ZP_01451932.1| pyruvate ferredoxin/flavodoxin oxidoreductase family protein
           [Mariprofundus ferrooxydans PV-1]
 gi|114552975|gb|EAU55406.1| pyruvate ferredoxin/flavodoxin oxidoreductase family protein
           [Mariprofundus ferrooxydans PV-1]
          Length = 1198

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 35/108 (32%), Gaps = 23/108 (21%)

Query: 57  PNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY--DIDM 100
               + CI C  C  +CP                A                 RY  +I +
Sbjct: 696 KWEPDVCIQCGNCSFVCPHSVIRAKFYHEDHLDNAPEGFPSAPISARGFPETRYTLEIYL 755

Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD-KERLLNNGDR 147
             C  C +C  ACP        + + AT+TR+ +    K  L+  G +
Sbjct: 756 EDCTGCEMCVNACPAF------DPDDATQTRKAINMTAKPALMEQGLK 797


>gi|119719845|ref|YP_920340.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermofilum pendens Hrk 5]
 gi|119524965|gb|ABL78337.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermofilum
           pendens Hrk 5]
          Length = 158

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 9/57 (15%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           I C +CE+ CP +AI +E             R  ID  +C  CG+C   CP  A+  
Sbjct: 39  IPCNVCESACPVKAIRVEG---------LRGRPRIDWDRCTGCGVCVGVCPGQAMFL 86


>gi|70606479|ref|YP_255349.1| putative ATPase RIL [Sulfolobus acidocaldarius DSM 639]
 gi|68567127|gb|AAY80056.1| RNase L inhibitor-like protein [Sulfolobus acidocaldarius DSM 639]
          Length = 604

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 24/71 (33%), Gaps = 2/71 (2%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESG-PRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           +R      + C     C   C A     +SG            +  I    CI CG+C +
Sbjct: 1   MRVAVINYDYCKP-DKCRLECIAFCPINKSGSKAIELSEIVKGKPIIYEETCIGCGICIK 59

Query: 112 ACPVDAIVEGP 122
            CP DAI    
Sbjct: 60  KCPFDAIDIVN 70


>gi|15668691|ref|NP_247490.1| polyferredoxin MvhB [Methanocaldococcus jannaschii DSM 2661]
 gi|48474788|sp|Q57934|Y514_METJA RecName: Full=Uncharacterized polyferredoxin-like protein MJ0514
 gi|1591217|gb|AAB98503.1| polyferredoxin (mvhB) [Methanocaldococcus jannaschii DSM 2661]
          Length = 250

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 10/71 (14%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
             +  L++Y   E  CI C +C   CP  AI             R    ++++  C+ CG
Sbjct: 118 HRKIRLKKYELDENTCIKCGICARFCPTNAIKAV----------RRKSIEVNLDLCMGCG 167

Query: 108 LCQEACPVDAI 118
            C E CP   I
Sbjct: 168 ACAEVCPKKCI 178



 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 11/67 (16%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           R     +  C+ C +C   CP  AI  +                I+  KCI CG C + C
Sbjct: 191 RDIEVDKNLCVGCLVCIEECPINAIDQDGDKV-----------KINKDKCILCGRCVDVC 239

Query: 114 PVDAIVE 120
           P +AI  
Sbjct: 240 PTNAIKM 246



 Score = 40.5 bits (93), Expect = 0.073,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 15/73 (20%)

Query: 61  ERCIACKLCEAICPAQA---------------ITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++C+ C++C   CP  A                             R  +Y++D   CI 
Sbjct: 76  DKCVKCEICAQTCPVGAIYVIEGRAEIEDSEVHYTIKEKSIPHRKIRLKKYELDENTCIK 135

Query: 106 CGLCQEACPVDAI 118
           CG+C   CP +AI
Sbjct: 136 CGICARFCPTNAI 148



 Score = 38.9 bits (89), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 9/63 (14%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E +CI C LC   CP  AI      +            I   KC+ C +C + CPV 
Sbjct: 41  YINETKCIRCNLCYKECPVDAIEKAKVKKSA---------KIIEDKCVKCEICAQTCPVG 91

Query: 117 AIV 119
           AI 
Sbjct: 92  AIY 94


>gi|46580179|ref|YP_010987.1| periplasmic [Fe] hydrogenase large subunit [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|120602431|ref|YP_966831.1| hydrogenases, Fe-only [Desulfovibrio vulgaris DP4]
 gi|130070|sp|P07598|PHFL_DESVH RecName: Full=Periplasmic [Fe] hydrogenase large subunit; AltName:
           Full=Fe hydrogenlyase
 gi|290560604|pdb|1HFE|L Chain L, 1.6 A Resolution Structure Of The Fe-Only Hydrogenase From
           Desulfovibrio Desulfuricans
 gi|290560605|pdb|1HFE|M Chain M, 1.6 A Resolution Structure Of The Fe-Only Hydrogenase From
           Desulfovibrio Desulfuricans
 gi|40830|emb|CAA26266.1| unnamed protein product [Desulfovibrio vulgaris str. Hildenborough]
 gi|46449596|gb|AAS96246.1| periplasmic [Fe] hydrogenase, large subunit [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|120562660|gb|ABM28404.1| hydrogenase, Fe-only [Desulfovibrio vulgaris DP4]
 gi|311233830|gb|ADP86684.1| hydrogenase, Fe-only [Desulfovibrio vulgaris RCH1]
          Length = 421

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 27/83 (32%), Gaps = 9/83 (10%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
             +  T         L      E +CI C  C   CP  AI  E G              
Sbjct: 10  EYEMHTPDPKADPDKLHFVQIDEAKCIGCDTCSQYCPTAAIFGEMGEPHSIPH------- 62

Query: 98  IDMIKCIYCGLCQEACPVDAIVE 120
             +  CI CG C   CP +AI E
Sbjct: 63  --IEACINCGQCLTHCPENAIYE 83


>gi|326422552|gb|EGD71947.1| ABC transporter related protein [Candidatus Parvarchaeum
           acidophilus ARMAN-5_'5-way FS']
          Length = 572

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 26/70 (37%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +R     E  C A   C  IC      +  G +     R   +  I    CI CG+C + 
Sbjct: 1   MRVAVIKESECEAPDNCNYICAEVCPRVREGAKETVYARENGKAAITESLCISCGICVKR 60

Query: 113 CPVDAIVEGP 122
           CP DAI    
Sbjct: 61  CPFDAIKIIN 70


>gi|313677680|ref|YP_004055676.1| hypothetical protein Ftrac_3598 [Marivirga tractuosa DSM 4126]
 gi|312944378|gb|ADR23568.1| hypothetical protein Ftrac_3598 [Marivirga tractuosa DSM 4126]
          Length = 597

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 27/88 (30%), Gaps = 10/88 (11%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R +   R   NG  +CI+C  C   C           R           +I    C+ CG
Sbjct: 511 RFKSRFRITTNG-GQCISCGNCSTYCEMGIDVRWYAQRGQ---------NIIRSSCVGCG 560

Query: 108 LCQEACPVDAIVEGPNFEFATETRQELY 135
           +C   CP   +      E     +  L 
Sbjct: 561 VCSSVCPRGVLNLENRDEDGRFNQPSLI 588


>gi|302343580|ref|YP_003808109.1| FAD dependent oxidoreductase [Desulfarculus baarsii DSM 2075]
 gi|301640193|gb|ADK85515.1| FAD dependent oxidoreductase [Desulfarculus baarsii DSM 2075]
          Length = 1011

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 10/61 (16%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E C AC +C   CP     I +               ID  KC+ CG+C   CP  AI  
Sbjct: 942 EMCAACLVCVRACPIGVPFINADGYS----------QIDPEKCLGCGICAAECPAKAIQL 991

Query: 121 G 121
            
Sbjct: 992 Q 992


>gi|301060755|ref|ZP_07201570.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300445152|gb|EFK09102.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 254

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 10/64 (15%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             +  Y    E+C AC +C   CP  AI             + + + ID  KCI CG C 
Sbjct: 170 EEVVSYYIDPEKCKACMICARSCPVDAIVG----------GKNLIHVIDQEKCIKCGTCF 219

Query: 111 EACP 114
           EACP
Sbjct: 220 EACP 223



 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/28 (57%), Positives = 18/28 (64%)

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           Y ID  KC  C +C  +CPVDAIV G N
Sbjct: 175 YYIDPEKCKACMICARSCPVDAIVGGKN 202


>gi|301061446|ref|ZP_07202216.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300444485|gb|EFK08480.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 912

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 30/81 (37%), Gaps = 12/81 (14%)

Query: 54  RRYPNGEERCIACKLCEAICP---AQAITIESGPRCHDGTRR----TVRYDIDMIKCIY- 105
                  ++CIAC  C   CP     A     G R     +      ++Y ID   CI  
Sbjct: 6   HPRYVDMDKCIACGACAEKCPKKVDNAYDAGLGKRKAIYVKYAQAVPLKYAIDPEYCIKL 65

Query: 106 ----CGLCQEACPVDAIVEGP 122
               CG C++ CP DAI    
Sbjct: 66  TKGKCGNCEKICPADAINYED 86



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 10/69 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              +C +C +C +ICP  A  +           +T + +I+   C  CGLC  +C   A+
Sbjct: 845 NPNKCSSCTVCVSICPYSAPRMNE---------KTGKAEIESTLCKGCGLCVASCRSGAL 895

Query: 119 VEGPNFEFA 127
                FE +
Sbjct: 896 HL-KGFETS 903


>gi|295102158|emb|CBK99703.1| hypothetical protein FP2_23730 [Faecalibacterium prausnitzii L2-6]
          Length = 293

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 21/87 (24%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L +    + +C++C  C   C                    V    +  +CI CG+C  A
Sbjct: 219 LFQMKVDKSKCVSCGKCARACKMD---------------VDVTKTPNHTECIRCGMCIRA 263

Query: 113 CPVDAIVE------GPNFEFATETRQE 133
           CP +A+        G   E A   R+ 
Sbjct: 264 CPTNAVCFRYGFGSGKEKENAATLREN 290


>gi|294673994|ref|YP_003574610.1| iron-sulfur cluster-binding protein [Prevotella ruminicola 23]
 gi|294474248|gb|ADE83637.1| iron-sulfur cluster-binding protein [Prevotella ruminicola 23]
          Length = 274

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 16/85 (18%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           +++   E+ CI C  C  +CP   I                   I   +C  C  C   C
Sbjct: 200 KKFTVDEDVCIKCGKCIKVCPVDNIQGTPPE------------WIHNGRCTSCLACYHYC 247

Query: 114 PVDAIVEGPNFEFATETRQELYYDK 138
           PV AI  G      T  R + Y++K
Sbjct: 248 PVHAINFGKI----TRKRDQYYFNK 268


>gi|257790263|ref|YP_003180869.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|325830362|ref|ZP_08163819.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1]
 gi|257474160|gb|ACV54480.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
 gi|325487829|gb|EGC90267.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1]
          Length = 394

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 11/53 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C  +C +  I+ +                I+  +CI CG C   CP  A+
Sbjct: 36  CMKCADVCTSGCISYDDNELV-----------IEPERCIGCGTCATVCPTCAL 77



 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 6/65 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E+C +C++C   CP  AI   +G     G           + C+ C  C + CP  A+
Sbjct: 291 DPEKCSSCQMCATFCPTGAIAKYAGEDGSIG------VTHRPVDCVKCRCCTDICPEGAL 344

Query: 119 VEGPN 123
                
Sbjct: 345 ELSDE 349


>gi|220904427|ref|YP_002479739.1| glutamate synthase alpha subunit domain-containing protein
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219868726|gb|ACL49061.1| glutamate synthase alpha subunit domain protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 381

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 7/68 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           G   C  CK+C   CP +AIT +            V Y  D   C  CG+C   CP    
Sbjct: 317 GAGACRDCKICLKFCPQKAITRKQTDD-------NVAYGADSGCCTGCGICAAVCPCGIW 369

Query: 119 VEGPNFEF 126
               N + 
Sbjct: 370 HMHSNRDM 377


>gi|189218638|ref|YP_001939279.1| dihydroorotate dehydrogenase fused to Fe-S-cluster domain
           [Methylacidiphilum infernorum V4]
 gi|189185496|gb|ACD82681.1| Dihydroorotate dehydrogenase fused to Fe-S-cluster domain
           [Methylacidiphilum infernorum V4]
          Length = 387

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/162 (22%), Positives = 50/162 (30%), Gaps = 26/162 (16%)

Query: 4   FRCNVSFLFLKE---------FVGAFFLC------LRYFFKAKTTINYPFEKGS-----T 43
           +R  V FL L            +  F +       L+ + ++K   +    +G       
Sbjct: 215 WRDGVEFLLLGATSLQLCTSVMLKGFRIAEDLLSGLKNWMRSKGFRSIAEFRGKSLSHLV 274

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-DIDMIK 102
                            ++CI C LC   C   A          D     V Y  +    
Sbjct: 275 PFSKLDPLFKEVAKINPQKCIRCLLCYVGCRDSAYQCIEVDNKLDLFSNPVNYPHVREAD 334

Query: 103 CIYCGLCQEACPVD-AIVEGPNFEFATETR--QELYYDKERL 141
           C+ C LC+  CPVD  I   P    A E R   E    KE L
Sbjct: 335 CVGCSLCRHLCPVDSCIEMIP--AQAEENRPAGEKIPTKEEL 374


>gi|164688323|ref|ZP_02212351.1| hypothetical protein CLOBAR_01968 [Clostridium bartlettii DSM
           16795]
 gi|164602736|gb|EDQ96201.1| hypothetical protein CLOBAR_01968 [Clostridium bartlettii DSM
           16795]
          Length = 421

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +E C+ C  CE  CP  AI++      +       + DID   C+ CG+C   C   +I
Sbjct: 288 NDESCVKCGKCEKACPIDAISLIKDENGN------KKVDIDYDVCLGCGVCARNCHKGSI 341

Query: 119 VEGPNFE 125
           +     E
Sbjct: 342 ILKRRQE 348


>gi|161529273|ref|YP_001583099.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Nitrosopumilus maritimus SCM1]
 gi|160340574|gb|ABX13661.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Nitrosopumilus maritimus SCM1]
          Length = 99

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 1/68 (1%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C LC  IC      +        G +R   +     +CI  G C   CP  AI  
Sbjct: 12  QMCIGCALCVEICTTLGPDVLRVKPVE-GWKRGKAFVFYPERCISDGACIGVCPTKAIFW 70

Query: 121 GPNFEFAT 128
               +F  
Sbjct: 71  MRPMDFTV 78


>gi|152970517|ref|YP_001335626.1| electron transport complex protein RnfB [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238895008|ref|YP_002919742.1| electron transport complex protein RnfB [Klebsiella pneumoniae
           NTUH-K2044]
 gi|262044608|ref|ZP_06017663.1| electron transport complex [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330015741|ref|ZP_08308242.1| electron transport complex, RnfABCDGE type, B subunit [Klebsiella
           sp. MS 92-3]
 gi|150955366|gb|ABR77396.1| electron transport complex protein RnfB [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238547324|dbj|BAH63675.1| electron transport complex protein [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259038009|gb|EEW39225.1| electron transport complex [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328530799|gb|EGF57656.1| electron transport complex, RnfABCDGE type, B subunit [Klebsiella
           sp. MS 92-3]
          Length = 192

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 23/76 (30%), Gaps = 10/76 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   +             + +    C  C LC   CP   I
Sbjct: 113 DEPNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVAPCPTQCI 162

Query: 119 VEGPNFEFATETRQEL 134
              P        + +L
Sbjct: 163 SLVPVATTPETWKWDL 178



 Score = 35.1 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C  C +ACPVDAI
Sbjct: 112 IDEPNCIGCTKCIQACPVDAI 132


>gi|149921106|ref|ZP_01909564.1| cyclic nucleotide-binding domain (cNMP-BD) protein [Plesiocystis
           pacifica SIR-1]
 gi|149817993|gb|EDM77452.1| cyclic nucleotide-binding domain (cNMP-BD) protein [Plesiocystis
           pacifica SIR-1]
          Length = 820

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 24/74 (32%), Gaps = 12/74 (16%)

Query: 60  EERCIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
              C  CK   C   CP  A+  +                I    C  CG C +ACP + 
Sbjct: 364 PNSCQHCKNPSCMLDCPTGAVGRDPEGEVF----------IREELCTGCGACAKACPWEN 413

Query: 118 IVEGPNFEFATETR 131
           I   P    + + R
Sbjct: 414 IRMAPRGPSSAQQR 427



 Score = 37.4 bits (85), Expect = 0.74,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 23/76 (30%), Gaps = 20/76 (26%)

Query: 63  CIACKLCEAICPAQ-----------AITIESGPRCHDGTRRTV----RYDIDMIKCIYCG 107
           C  C  C   CP +           A      P      R+ +     +     KC  C 
Sbjct: 399 CTGCGACAKACPWENIRMAPRGPSSAQQRWGEPLREAAERKGMDLLAMFPEVATKCDSCR 458

Query: 108 L-----CQEACPVDAI 118
                 C ++CP +AI
Sbjct: 459 AYEAPACVQSCPTEAI 474


>gi|170741268|ref|YP_001769923.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium sp. 4-46]
 gi|168195542|gb|ACA17489.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium sp. 4-46]
          Length = 670

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 23/67 (34%), Gaps = 9/67 (13%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C  C  C   CP  A++ +                     C+ CGLC   CP D I   P
Sbjct: 524 CTLCHACVGACPTGALSDDPDRPLLS---------FSESLCVQCGLCAATCPEDVITLEP 574

Query: 123 NFEFATE 129
             +FA  
Sbjct: 575 RLDFAAW 581



 Score = 37.8 bits (86), Expect = 0.59,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 16/54 (29%), Gaps = 11/54 (20%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
             C  C  +CP  AI                   +D   C  CG C   CP  A
Sbjct: 281 TGCSRCLDVCPTGAIAPAGD-----------HVAVDPFVCAGCGSCASVCPTGA 323


>gi|187477591|ref|YP_785615.1| ferredoxin [Bordetella avium 197N]
 gi|115422177|emb|CAJ48701.1| ferredoxin [Bordetella avium 197N]
          Length = 213

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 24/70 (34%), Gaps = 10/70 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L      E  CI C LC   CP  AI   +             + +    C  C LC   
Sbjct: 75  LLVARIDEAHCIGCTLCIRACPVDAIAGANK----------RMHTVLADLCSGCDLCVAP 124

Query: 113 CPVDAIVEGP 122
           CPVD I   P
Sbjct: 125 CPVDCIDMVP 134


>gi|160878253|ref|YP_001557221.1| putative PAS/PAC sensor protein [Clostridium phytofermentans ISDg]
 gi|160426919|gb|ABX40482.1| putative PAS/PAC sensor protein [Clostridium phytofermentans ISDg]
          Length = 577

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 11/64 (17%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           +C  C  C   C  +AIT++                I   KCI CG C E CP +A    
Sbjct: 10  KCKNCYKCVRNCDVKAITVKDAQAY-----------IMNDKCILCGHCLEVCPQNAKTLI 58

Query: 122 PNFE 125
            + E
Sbjct: 59  SDLE 62


>gi|150015671|ref|YP_001307925.1| sulfite reductase, subunit C [Clostridium beijerinckii NCIMB 8052]
 gi|149902136|gb|ABR32969.1| Sulfite reductase, Subunit C [Clostridium beijerinckii NCIMB 8052]
          Length = 321

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 28/90 (31%), Gaps = 12/90 (13%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +         G   +       +RC++C  C   C           +   G    + 
Sbjct: 145 CPNDCIKARTHDFGIIGMTEPQYNIDRCVSCMACVKAC----------KKKSVGALEAIN 194

Query: 96  YDI--DMIKCIYCGLCQEACPVDAIVEGPN 123
           Y I  +  KCI CG C  ACP  A      
Sbjct: 195 YKIVRNKEKCIGCGECANACPTGAWTRSKE 224


>gi|114319975|ref|YP_741658.1| electron transport complex protein RnfC [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114226369|gb|ABI56168.1| electron transport complex, RnfABCDGE type, C subunit
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 515

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 34/99 (34%), Gaps = 19/99 (19%)

Query: 62  RCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
            CI C  C   CP     Q I   +  R ++       +D     CI CG C   CP   
Sbjct: 377 PCIRCGACAEACPERLAPQQIYWHTRARDYEHADDWGVFD-----CIECGACAWVCPSH- 430

Query: 118 IVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNI 156
           I     F  A    +     KE+     ++  +E+ R  
Sbjct: 431 IPLVQYFRHA----KGAIAQKEQ-----EKARAELARRR 460


>gi|307718154|ref|YP_003873686.1| transporter [Spirochaeta thermophila DSM 6192]
 gi|306531879|gb|ADN01413.1| transporter [Spirochaeta thermophila DSM 6192]
          Length = 440

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 28/75 (37%), Gaps = 3/75 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           GEE CI C  C  +CP              G  R +        CI C LC   CP  AI
Sbjct: 363 GEEPCIHCSRCAQVCPRGLEPWLLHEALGRGDGRLLTGGAIEG-CIGCNLCSFVCP-SAI 420

Query: 119 VEGPNF-EFATETRQ 132
                F ++  + R+
Sbjct: 421 PLADRFRDYLEKERE 435


>gi|291534171|emb|CBL07284.1| Glutamate synthase domain 2 [Megamonas hypermegale ART12/1]
          Length = 543

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 34/96 (35%), Gaps = 18/96 (18%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIE---------SGPRCHDGTRRTVRYDIDMIK-- 102
            +     +RC  C  C A C  QAI  +          G              I  +K  
Sbjct: 16  WKIEYDMDRCTMCGSCLATCTFQAIKADVIRIDKTTSDGLFPDPKHTHKAIPVIKQVKTL 75

Query: 103 ---CIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
              C+ CG+C++ CP  AI    N     +TR+ L 
Sbjct: 76  ANACVGCGMCEKVCPNGAIRPVRN----ADTRKTLL 107


>gi|317131567|ref|YP_004090881.1| cobyrinic acid ac-diamide synthase [Ethanoligenens harbinense
           YUAN-3]
 gi|315469546|gb|ADU26150.1| cobyrinic acid ac-diamide synthase [Ethanoligenens harbinense
           YUAN-3]
          Length = 291

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 26/80 (32%), Gaps = 23/80 (28%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
             P EK          + L +    +  C  C  CEA+C   AI                
Sbjct: 49  KVPEEKP--------FYGLNKAVKDDTVCTNCGKCEALCRFGAIENGK------------ 88

Query: 95  RYDIDMIKCIYCGLCQEACP 114
              ++   C  CG+C+  CP
Sbjct: 89  ---VNPYACEGCGVCEAVCP 105


>gi|227326452|ref|ZP_03830476.1| electron transport complex protein RnfB [Pectobacterium carotovorum
           subsp. carotovorum WPP14]
          Length = 192

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 22/73 (30%), Gaps = 10/73 (13%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            A       E  CI C  C   CP  AI   +             + +    C  C LC 
Sbjct: 105 PARHVAWIDESNCIGCTKCIQACPVDAIIGSTK----------AVHTVVSDLCTGCDLCV 154

Query: 111 EACPVDAIVEGPN 123
             CP D I   P 
Sbjct: 155 SPCPTDCIELRPI 167


>gi|261856373|ref|YP_003263656.1| electron transport complex, RnfABCDGE type subunit beta
           [Halothiobacillus neapolitanus c2]
 gi|261836842|gb|ACX96609.1| electron transport complex, RnfABCDGE type, B subunit
           [Halothiobacillus neapolitanus c2]
          Length = 192

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 23/64 (35%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   +             + +   +C  C LC   CPVD I
Sbjct: 110 DESVCIGCTKCIQACPVDAILGAAKQ----------MHTVIAAECTGCELCVAPCPVDCI 159

Query: 119 VEGP 122
              P
Sbjct: 160 DMVP 163



 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C  C +ACPVDAI
Sbjct: 109 IDESVCIGCTKCIQACPVDAI 129


>gi|164686664|ref|ZP_02210692.1| hypothetical protein CLOBAR_00259 [Clostridium bartlettii DSM
           16795]
 gi|164604054|gb|EDQ97519.1| hypothetical protein CLOBAR_00259 [Clostridium bartlettii DSM
           16795]
          Length = 898

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 23/87 (26%), Gaps = 5/87 (5%)

Query: 55  RYPNGEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            +      CI C  C   C       AI                   ID   C  CG C 
Sbjct: 140 FFTYNPNLCILCHRCVNTCHKIVGRGAIDTMERGFDSTIGTPFHVDWIDTT-CESCGNCV 198

Query: 111 EACPVDAIVEGPNFEFATETRQELYYD 137
           +ACP  A+      E+      +    
Sbjct: 199 QACPTGALTMKRRKEYRPYQVDKKVLT 225


>gi|188579565|ref|YP_001923010.1| formate dehydrogenase, alpha subunit [Methylobacterium populi
           BJ001]
 gi|179343063|gb|ACB78475.1| formate dehydrogenase, alpha subunit [Methylobacterium populi
           BJ001]
          Length = 989

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 3/87 (3%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRY 96
             +   + R+  + +        + CI C LC   C   Q   +         ++    +
Sbjct: 188 ESRFPAAERWSSDVSHPAMSVNLDACIQCNLCVRACREVQVNDVIGMAYRSADSKVVFDF 247

Query: 97  DIDM--IKCIYCGLCQEACPVDAIVEG 121
           D  M    C+ CG C +ACP  A++  
Sbjct: 248 DDPMGASTCVACGECVQACPTGALMPS 274


>gi|82734602|gb|ABB89709.1| trichloroethene reductive dehalogenase [Dehalococcoides sp.
           Owls-PCE]
 gi|82734608|gb|ABB89713.1| trichloroethene reductive dehalogenase [Dehalococcoides sp. CH-PCE]
          Length = 526

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 3/60 (5%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID---MIKCIYCGLCQEACPVD 116
            E C  C +C   CP QAI+ E              Y+       KCI C  C+  CP  
Sbjct: 406 REFCKTCGICAEHCPTQAISHEGPRYDSPHWDCVSGYEGWHLDHHKCINCTNCESFCPFF 465



 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 103 CIYCGLCQEACPVDAI-VEGPNFE 125
           C  CG+C E CP  AI  EGP ++
Sbjct: 409 CKTCGICAEHCPTQAISHEGPRYD 432


>gi|82734605|gb|ABB89711.1| trichloroethene reductive dehalogenase [Dehalococcoides sp. LH-PCE]
          Length = 526

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 3/60 (5%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID---MIKCIYCGLCQEACPVD 116
            E C  C +C   CP QAI+ E              Y+       KCI C  C+  CP  
Sbjct: 406 REFCKTCGICAEHCPTQAISHEGPRYDSPHWDCVSGYEGWHLDHHKCINCTNCESFCPFF 465



 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 103 CIYCGLCQEACPVDAI-VEGPNFE 125
           C  CG+C E CP  AI  EGP ++
Sbjct: 409 CKTCGICAEHCPTQAISHEGPRYD 432


>gi|94271958|ref|ZP_01292042.1| 4Fe-4S ferredoxin, iron-sulfur binding:Molybdopterin oxidoreductase
           Fe4S4 region [delta proteobacterium MLMS-1]
 gi|93450290|gb|EAT01543.1| 4Fe-4S ferredoxin, iron-sulfur binding:Molybdopterin oxidoreductase
           Fe4S4 region [delta proteobacterium MLMS-1]
          Length = 608

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 1/81 (1%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           T+PR+  +           +CI C  C   C  +A+ I +G     G  + +     M  
Sbjct: 388 TTPRYARQEEHPTISVDLNKCIYCHKCANSCEYRALEITAGSFDEQGRAQDLSLT-FMEH 446

Query: 103 CIYCGLCQEACPVDAIVEGPN 123
           C+ CG C + C   A+ +   
Sbjct: 447 CVSCGKCVDNCSTGALNKKDQ 467



 Score = 35.5 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 11/96 (11%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKL-----CEAICPAQAITIESGPRCHDGTR 91
           P          R     +   +  ERC++C       C+    A A  ++        T 
Sbjct: 331 PERAIQDFNEVRLGFTEQMAKSEAERCLSCGCTAFDRCDLKEQAIAHGVDPNKTGMGTTP 390

Query: 92  RTVRYDIDM------IKCIYCGLCQEACPVDAIVEG 121
           R  R +          KCIYC  C  +C   A+   
Sbjct: 391 RYARQEEHPTISVDLNKCIYCHKCANSCEYRALEIT 426


>gi|58616427|ref|YP_195556.1| 2-ketoglutarate: NADP oxidoreductase, gamma subunit [Azoarcus sp.
           EbN1]
 gi|56315889|emb|CAI10532.1| 2-ketoglutarate: NADP oxidoreductase, gamma subunit [Aromatoleum
           aromaticum EbN1]
          Length = 595

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 33/105 (31%), Gaps = 20/105 (19%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR------------ 85
            E+ + +   R  +           CI C  C  ICP++ IT  +               
Sbjct: 476 DERQALAEAERCLNCDVHTVFSAPACIECNACVDICPSECITFTADGEETELRARLTAPA 535

Query: 86  --------CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                     DG +       D   C++CG+C E CP  A     
Sbjct: 536 TNPAQPLYVADGVKSGRIMVKDENLCLHCGMCSERCPTAAWDMQK 580


>gi|327400963|ref|YP_004341802.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
 gi|327316471|gb|AEA47087.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
          Length = 435

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 27/74 (36%), Gaps = 2/74 (2%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
             F    A        E+C  C +C + C   A  +                 ID  KC 
Sbjct: 153 EDFPKADARGSIRIDTEKCNLCGICASFC--DAFKLVDKDVKPGNLTPFAEILIDEEKCD 210

Query: 105 YCGLCQEACPVDAI 118
           YCGLC + CP +AI
Sbjct: 211 YCGLCVKLCPEEAI 224



 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            EE+C  C LC  +CP +AI +ES         R     +   +CI+CG C   CP +A+
Sbjct: 205 DEEKCDYCGLCVKLCPEEAIEVESSKVIEADVERVAEV-VFTDRCIHCGYCVAVCPYEAV 263



 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 29/83 (34%), Gaps = 3/83 (3%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
            K      F    A          C  C +C A CP  A          + ++  +    
Sbjct: 62  VKAIEFAGFEALAAGMPLIIDHLSCAYCGICYAFCPFNAFEFRINGEIVEKSKLPLSLGG 121

Query: 99  DMIK---CIYCGLCQEACPVDAI 118
            + K   C+ C LC E CPVDAI
Sbjct: 122 KIEKLENCVDCMLCVEVCPVDAI 144



 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 35/96 (36%), Gaps = 4/96 (4%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P + G    +   E  LR        C  CK C   CP +AI          G      
Sbjct: 23  IPEQLGLLVFKQHFEGELRELIFNPALCNGCKFCVYACPVKAIEFAGFEALAAGMPLI-- 80

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
             ID + C YCG+C   CP +A     N E   +++
Sbjct: 81  --IDHLSCAYCGICYAFCPFNAFEFRINGEIVEKSK 114



 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR--YDIDMIKCIYCGLCQEAC 113
           E C+ C LC  +CP  AI      R  D  +   R    ID  KC  CG+C   C
Sbjct: 127 ENCVDCMLCVEVCPVDAIERRVLARREDFPKADARGSIRIDTEKCNLCGICASFC 181



 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 28/111 (25%), Gaps = 28/111 (25%)

Query: 36  YPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93
            P E      S     +          +RCI C  C A+CP +A+               
Sbjct: 219 CPEEAIEVESSKVIEADVERVAEVVFTDRCIHCGYCVAVCPYEAVINIKPVEGEIKVYWK 278

Query: 94  VRYDID--------------------------MIKCIYCGLCQEACPVDAI 118
               +                              C+YCG C+  CP   I
Sbjct: 279 RLARVCEPLSCKACVVVCKTRAWHIDSELKLEPEFCVYCGACENVCPHRLI 329


>gi|315619435|gb|EFU99979.1| pyruvate:ferredoxin oxidoreductase [Escherichia coli 3431]
          Length = 1174

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/142 (19%), Positives = 35/142 (24%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGT--------------RRTVRYD--IDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                     R  +Y   +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLLVAPEDCTGCNLCVEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI      E   E +
Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781


>gi|301063636|ref|ZP_07204150.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300442284|gb|EFK06535.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 1084

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 24/89 (26%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
             P                 R+   ++ CI C LC  +C     +  S        +   
Sbjct: 102 RCPHVPVLKELAQAYGIEKPRFVPEKDDCILCGLCVRMCEKVGNSAISLTGRGVEMKVDT 161

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
            ++     C  CG C   CP   I     
Sbjct: 162 PFEEQTEFCAGCGACDSVCPTGHIKLEKI 190



 Score = 40.5 bits (93), Expect = 0.085,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 6/64 (9%)

Query: 57   PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
                  C  C +C AICP  A  +   P          R +I+   C  CGLC  +C   
Sbjct: 1012 QTDPALCSGCGVCLAICPYSAPALREKPPFAG------RVEINPALCKGCGLCVASCRSG 1065

Query: 117  AIVE 120
            A+  
Sbjct: 1066 ALNL 1069


>gi|296271827|ref|YP_003654458.1| pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta
           [Arcobacter nitrofigilis DSM 7299]
 gi|296096002|gb|ADG91952.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Arcobacter nitrofigilis DSM 7299]
          Length = 137

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 32/92 (34%), Gaps = 13/92 (14%)

Query: 47  FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
           + G+  + +     E CI C+ C   CP  A+   +               ID   C  C
Sbjct: 49  YVGDWRVMKPVWNTELCIDCQNCWIYCPDSAVISRNKEIQG----------IDYDHCKGC 98

Query: 107 GLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
           G+C E CP +         F    + EL   K
Sbjct: 99  GICVEVCPTNPKSL---MMFNETEKNELALTK 127


>gi|294496337|ref|YP_003542830.1| electron transport complex, RnfABCDGE type subunit beta
           [Methanohalophilus mahii DSM 5219]
 gi|292667336|gb|ADE37185.1| electron transport complex, RnfABCDGE type, B subunit
           [Methanohalophilus mahii DSM 5219]
          Length = 265

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 26/62 (41%), Gaps = 11/62 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI CKLCE  CP  A+ +                +ID  KCI CG C E CP   I
Sbjct: 214 CENGCIGCKLCEKACPVDAVHVTK-----------FLAEIDQEKCISCGKCVEKCPQGCI 262

Query: 119 VE 120
             
Sbjct: 263 EM 264



 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 5/69 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEAC 113
            +  C +C +C A CP   +                 +      +    CI C LC++AC
Sbjct: 169 NKNLCTSCGICIASCPNDILVFAKQSEKVHVVCMSHDKGKTVKAVCENGCIGCKLCEKAC 228

Query: 114 PVDAIVEGP 122
           PVDA+    
Sbjct: 229 PVDAVHVTK 237


>gi|288559598|ref|YP_003423084.1| tungsten formylmethanofuran dehydrogenase subunit F FwdF
           [Methanobrevibacter ruminantium M1]
 gi|288542308|gb|ADC46192.1| tungsten formylmethanofuran dehydrogenase subunit F FwdF
           [Methanobrevibacter ruminantium M1]
          Length = 367

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 9/94 (9%)

Query: 27  FFKAKTTINYPFEKGSTSPRFRGEHALRR--YPNGEERCIACKLCEAICPAQAITIESGP 84
            F  K     P E  +   +      L        EE CI C  C  +CPA+AI ++   
Sbjct: 139 LFCKKCEAACPRESITIDRKLPNRADLVTGEIEVDEEECIYCGACAELCPAEAIVVDKAT 198

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                        ID  KC+YC +C++ACPVDAI
Sbjct: 199 GEES-------IVIDKEKCVYCLVCKKACPVDAI 225



 Score = 41.2 bits (95), Expect = 0.043,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 8/86 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +  +    F+G   +      EE+C  C  C  +CP   ++    P+      R   
Sbjct: 267 CPADAATVKQAFKGTLEI-----DEEKCGTCGACIDVCPCNVLSF---PKSTGPGDRGTH 318

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEG 121
              +   CI+CG C + CP +A+   
Sbjct: 319 LVKEEDYCIHCGACAKVCPNEALTVT 344



 Score = 39.3 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 7/66 (10%)

Query: 59  GEERCIACKLCEAICPAQA-------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +E+C+ C +C+  CP  A        +             T    ID   CI CG C+ 
Sbjct: 206 DKEKCVYCLVCKKACPVDAIKAVCRSCSYGEYDLDPAKAAITGNAIIDSETCIKCGWCEG 265

Query: 112 ACPVDA 117
            CP DA
Sbjct: 266 VCPADA 271



 Score = 38.2 bits (87), Expect = 0.38,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 59  GEERCIACKLCEAICPAQA----ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            E++C+ C LC  +CPA A    I   S              +ID  KC++C  C+ ACP
Sbjct: 90  CEDKCVLCGLCSGVCPAGALELAIDGVSIKENEAYPHLVTSAEIDEDKCLFCKKCEAACP 149

Query: 115 VDAIVE 120
            ++I  
Sbjct: 150 RESITI 155



 Score = 37.4 bits (85), Expect = 0.69,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 32/95 (33%), Gaps = 22/95 (23%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT----------------- 90
           R     R     +  C+ C LCEA CP +AI+++                          
Sbjct: 17  RSLGEERVLSFKDHVCVGCGLCEATCPVEAISLDEVAPIERKYVDTYFSGHEKIAQNYAL 76

Query: 91  -----RRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
                    + DI   KC+ CGLC   CP  A+  
Sbjct: 77  FTNDNEIKAKLDICEDKCVLCGLCSGVCPAGALEL 111


>gi|254421458|ref|ZP_05035176.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Synechococcus sp.
           PCC 7335]
 gi|196188947|gb|EDX83911.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Synechococcus sp.
           PCC 7335]
          Length = 1216

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 33/114 (28%), Gaps = 26/114 (22%)

Query: 58  NGEERCIACKLCEAICPA---QAITIESGP-------------RCHDGTRRTVRYDIDMI 101
              + C+ C  C  +CP    +A   E                R    +       +   
Sbjct: 708 WDPDVCVQCGKCVMVCPHSVIRAKVYEPEQLASAPDSFKSTSARDRAWSDLQFTIQVAAE 767

Query: 102 KCIYCGLCQEACPV--------DAIVEGPNFEFATETRQELYYDKERLLNNGDR 147
            C  C +C + CP          AI   P      + R+   +  E  L N DR
Sbjct: 768 DCTGCAICIDVCPAKNKLEPKRKAINMEPQLPLREQERKNWDFFLE--LPNPDR 819



 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 13/58 (22%)

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIV 157
              C+ CG C   CP   I                 Y+ E+L +  D ++S   R+  
Sbjct: 710 PDVCVQCGKCVMVCPHSVIRAK-------------VYEPEQLASAPDSFKSTSARDRA 754


>gi|168178363|ref|ZP_02613027.1| anaerobic sulfite reductase, subunit C [Clostridium botulinum NCTC
           2916]
 gi|182671088|gb|EDT83062.1| anaerobic sulfite reductase, subunit C [Clostridium botulinum NCTC
           2916]
          Length = 321

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 25/88 (28%), Gaps = 8/88 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +         G   +      + RC+ C+ C   C  +A                 +
Sbjct: 145 CPNDCIKARMHDFGILGMTEPQYDKYRCVGCQACVNNCKKRA--------AGALRFENFK 196

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPN 123
              D  KCI CG C   CP  A      
Sbjct: 197 VIRDHEKCIGCGECVGKCPTGAWTRSKE 224


>gi|156975236|ref|YP_001446143.1| electron transport complex protein RnfB [Vibrio harveyi ATCC
           BAA-1116]
 gi|166225088|sp|A7MVC6|RNFB_VIBHB RecName: Full=Electron transport complex protein rnfB
 gi|156526830|gb|ABU71916.1| hypothetical protein VIBHAR_02965 [Vibrio harveyi ATCC BAA-1116]
          Length = 197

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 28/87 (32%), Gaps = 11/87 (12%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103
           S               E+ CI C  C   CP  AI   +             + +   +C
Sbjct: 95  SAHDLDSKVKTVAFIHEDMCIGCTKCIQACPVDAIVGGTK----------ALHTVIKDEC 144

Query: 104 IYCGLCQEACPVDAIVEGPNFEFATET 130
             C LC   CP D I   P  E  TE+
Sbjct: 145 TGCDLCVAPCPTDCIEMIPV-ETTTES 170


>gi|466365|gb|AAA87056.1| potential NAD-reducing hydrogenase subunit [Desulfovibrio
           fructosovorans]
          Length = 490

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 10/67 (14%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           AL  Y     +C  C LC  +CP + I+                + ID  +CI CG C +
Sbjct: 431 ALLTYTIDPAKCTGCGLCTRVCPVECISGTKKQP----------HTIDTTRCIKCGACYD 480

Query: 112 ACPVDAI 118
            C  D+I
Sbjct: 481 KCKFDSI 487



 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 17/44 (38%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            ++            + Y ID  KC  CGLC   CPV+ I    
Sbjct: 418 HVDDKKCPAHVCTALLTYTIDPAKCTGCGLCTRVCPVECISGTK 461


>gi|20094437|ref|NP_614284.1| ferredoxin [Methanopyrus kandleri AV19]
 gi|19887524|gb|AAM02214.1| Ferredoxin [Methanopyrus kandleri AV19]
          Length = 299

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 3/75 (4%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103
                 +   +      E+C  C LC  +CP  AIT     R      R V+ +ID  KC
Sbjct: 188 PDTMELKQGRKVAKIDPEKCTGCTLCAQVCPWGAIT---AARDVPVQSREVKNEIDEDKC 244

Query: 104 IYCGLCQEACPVDAI 118
           + CG+C E CP D I
Sbjct: 245 VGCGVCAEVCPGDLI 259



 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 3/70 (4%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIE---SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           YP     C+ C  C   CP  AI ++                   +   +C+ C  C + 
Sbjct: 99  YPELRGFCVMCLKCMETCPIDAIGMKGVVEPKSEPPEHPEDEDVYVHPERCVGCTYCLQV 158

Query: 113 CPVDAIVEGP 122
           CP DAI   P
Sbjct: 159 CPTDAIEMVP 168



 Score = 37.8 bits (86), Expect = 0.59,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 15/69 (21%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                  + C+ C+ C A CP  AI  E G                M  CI CG C +AC
Sbjct: 1   MPIEIDMDSCLLCEACVAACPTGAIRREDGD---------------MNHCIVCGACVKAC 45

Query: 114 PVDAIVEGP 122
           PVDA+    
Sbjct: 46  PVDALELED 54


>gi|28898878|ref|NP_798483.1| electron transport complex protein RnfC [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|260897154|ref|ZP_05905650.1| electron transport complex protein RnfC [Vibrio parahaemolyticus
           Peru-466]
 gi|260902709|ref|ZP_05911104.1| electron transport complex, rnfABCDGE type, c subunit family
           protein [Vibrio parahaemolyticus AQ4037]
 gi|28807097|dbj|BAC60367.1| RnfC-related protein [Vibrio parahaemolyticus RIMD 2210633]
 gi|308087160|gb|EFO36855.1| electron transport complex protein RnfC [Vibrio parahaemolyticus
           Peru-466]
 gi|308109009|gb|EFO46549.1| electron transport complex, rnfABCDGE type, c subunit family
           protein [Vibrio parahaemolyticus AQ4037]
          Length = 869

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            CI C  C   CPA  +  +               ++++  CI CG C   CP
Sbjct: 377 ECIRCGQCAEACPAS-LLPQQLQWHAKAEEYDKLEELNLKDCIECGACAFVCP 428



 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 19/43 (44%)

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           +  +Q    ++       TR  +      ++CI CG C EACP
Sbjct: 347 LPHSQVPITKTANCILAPTRHEISAHQYEMECIRCGQCAEACP 389


>gi|116749237|ref|YP_845924.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Syntrophobacter fumaroxidans MPOB]
 gi|116698301|gb|ABK17489.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Syntrophobacter fumaroxidans MPOB]
          Length = 1009

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 6/59 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
               C AC  CE  C  +A       +  DG +R +    +   C  CG C  ACP  A
Sbjct: 939 DAALCRACGECENTCLFEA---IKVKQMEDGRKRAMV---NEALCTGCGACNAACPTGA 991



 Score = 38.5 bits (88), Expect = 0.31,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 12/87 (13%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR-------CHDGTRRTVRY 96
              F+     +      E+C+ C +C + CP +     +G                 + Y
Sbjct: 91  PGNFKATVRRKARAVDPEKCVGCGICASKCPTKVPDPFNGEMSERRAIYVPFPQAVPLVY 150

Query: 97  DIDMIKCIY-----CGLCQEACPVDAI 118
            ID   C Y     C +C++ C   AI
Sbjct: 151 TIDKSVCRYFTKGKCRICEKVCKNKAI 177


>gi|325278986|ref|YP_004251528.1| FAD dependent oxidoreductase [Odoribacter splanchnicus DSM 20712]
 gi|324310795|gb|ADY31348.1| FAD dependent oxidoreductase [Odoribacter splanchnicus DSM 20712]
          Length = 1076

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 25/81 (30%), Gaps = 10/81 (12%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E+       R         +      AC  C   CP  AIT  S          +    I
Sbjct: 441 EEPRLPEESRRLARGFVQADCLYGF-ACNPCSFACPHGAITKTST---------STVPVI 490

Query: 99  DMIKCIYCGLCQEACPVDAIV 119
           D  KCI C  C   CP  AI 
Sbjct: 491 DYDKCIGCMECVYQCPGLAIF 511


>gi|295110357|emb|CBL24310.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric
           [Ruminococcus obeum A2-162]
          Length = 1178

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 21/71 (29%), Gaps = 14/71 (19%)

Query: 58  NGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTR---------RTVRYDIDMIKC 103
              E CI C  C  +CP  AI     T E      +G                 +    C
Sbjct: 689 WQPENCIQCNRCAYVCPHAAIRPVALTEEEAANAPEGMATLPMTGMKDYKFTMTVSAYDC 748

Query: 104 IYCGLCQEACP 114
             CG C   CP
Sbjct: 749 TGCGSCANVCP 759



 Score = 34.7 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 8/20 (40%), Positives = 8/20 (40%)

Query: 99  DMIKCIYCGLCQEACPVDAI 118
               CI C  C   CP  AI
Sbjct: 690 QPENCIQCNRCAYVCPHAAI 709


>gi|288818982|ref|YP_003433330.1| NAD-dependent formate dehydrogenase alpha subunit [Hydrogenobacter
           thermophilus TK-6]
 gi|288788382|dbj|BAI70129.1| NAD-dependent formate dehydrogenase alpha subunit [Hydrogenobacter
           thermophilus TK-6]
 gi|308752567|gb|ADO46050.1| formate dehydrogenase alpha subunit ;NAD-dependent formate
           dehydrogenase catalytic subunit [Hydrogenobacter
           thermophilus TK-6]
          Length = 942

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 34/111 (30%), Gaps = 14/111 (12%)

Query: 25  RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---E 81
           RY F  K  +  P +  +    F              +CI C  C   C     TI    
Sbjct: 142 RYGFDGKNHLKLPKDDSNPYFTF-----------DPSKCIVCYRCVRACDEIQNTIALTV 190

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
            G       +          +C+ CG C  ACP  A++E    E     R 
Sbjct: 191 EGRGFASLVKPGPTGRFITSECVSCGACVFACPTSALMEKSVIEHGMPDRS 241


>gi|253997321|ref|YP_003049385.1| RnfABCDGE type electron transport complex subunit B [Methylotenera
           mobilis JLW8]
 gi|253984000|gb|ACT48858.1| electron transport complex, RnfABCDGE type, B subunit
           [Methylotenera mobilis JLW8]
          Length = 200

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 27/87 (31%), Gaps = 10/87 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E    +               E  CI C LC   CP  AI   +             + I
Sbjct: 90  EYKPLNAEHGLPKPKAVAFIDEATCIGCTLCIQACPVDAILGAAK----------HMHTI 139

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFE 125
              +C  C LC   CPVD I   P  E
Sbjct: 140 IASECTGCELCLAPCPVDCISMQPLAE 166


>gi|258515481|ref|YP_003191703.1| aldo/keto reductase [Desulfotomaculum acetoxidans DSM 771]
 gi|257779186|gb|ACV63080.1| aldo/keto reductase [Desulfotomaculum acetoxidans DSM 771]
          Length = 317

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 11/56 (19%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C  C   C A A++I              R  ++  KC  CG C   CP   I
Sbjct: 270 CKNCGECVQRCQAGALSIGID-----------RVQVNQDKCRLCGYCASVCPEFCI 314


>gi|261367572|ref|ZP_05980455.1| periplasmic [Fe] hydrogenase, large subunit [Subdoligranulum
           variabile DSM 15176]
 gi|282570359|gb|EFB75894.1| periplasmic [Fe] hydrogenase, large subunit [Subdoligranulum
           variabile DSM 15176]
          Length = 585

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 26/94 (27%), Gaps = 7/94 (7%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---YDIDMIKCIYC 106
                       +CI C  C  +C                  R        I    C+ C
Sbjct: 135 WPRDFPLYRDTNKCIKCMRCIQVCDKIQGVHVWDLSGTGSRTRVDVSGNRRIKESDCVLC 194

Query: 107 GLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140
           G C   CP  A+ E  + + A     +   D E+
Sbjct: 195 GQCITHCPTGALRERNDTQRAF----DAIADPEK 224


>gi|297619110|ref|YP_003707215.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus voltae A3]
 gi|297378087|gb|ADI36242.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           voltae A3]
          Length = 145

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 26/67 (38%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E++C  C  C   CP  AIT+ +       +R       +   C  CG C   CP +
Sbjct: 14  KWDEKKCEYCGPCAIKCPNDAITVVNPKGLELPSRNKTDKANEFKMCDLCGTCVSVCPTE 73

Query: 117 AIVEGPN 123
           A+  G  
Sbjct: 74  ALKMGKI 80



 Score = 40.5 bits (93), Expect = 0.084,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 3/67 (4%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           N  + C  C  C ++CP +A+ +    +     +   R +     C  CG C E CP + 
Sbjct: 55  NEFKMCDLCGTCVSVCPTEALKM---GKIIHNEKEYDRIEFTPSLCNSCGTCVEVCPQNT 111

Query: 118 IVEGPNF 124
           +     +
Sbjct: 112 LKVDEEY 118


>gi|156933858|ref|YP_001437774.1| hypothetical protein ESA_01684 [Cronobacter sakazakii ATCC BAA-894]
 gi|156532112|gb|ABU76938.1| hypothetical protein ESA_01684 [Cronobacter sakazakii ATCC BAA-894]
          Length = 1173

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 35/143 (24%), Gaps = 25/143 (17%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       E  C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPLGTTQWEKRNIAEEIPIWKEALCTQCNHCVAAC 699

Query: 74  PAQAITIES----------------GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           P  AI  +                   +  D   +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVAPDALADAPASLAALDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759

Query: 118 IVEGPNFEFATETRQELYYDKER 140
                       +R E   +KE+
Sbjct: 760 RQNPEIKAINMMSRLEHV-EKEK 781


>gi|154496280|ref|ZP_02034976.1| hypothetical protein BACCAP_00567 [Bacteroides capillosus ATCC
           29799]
 gi|150274363|gb|EDN01440.1| hypothetical protein BACCAP_00567 [Bacteroides capillosus ATCC
           29799]
          Length = 1180

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 28/93 (30%), Gaps = 18/93 (19%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA-----------------QAITIESGPRCHDGT 90
           RG   +        +CI C  C  +CP                  +A  I          
Sbjct: 681 RGVAVMVPTW-DASKCIQCNQCSYVCPHATIRPYALTEEEAAAAPEAAKIVDVKAGKGKG 739

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                  +  + C+ C +C + CPV A+   P 
Sbjct: 740 VYKFAIAVSPLDCMGCAVCAKNCPVQALTMVPQ 772


>gi|197116525|ref|YP_002136952.1| molybdopterin-binding oxidoreductase [Geobacter bemidjiensis Bem]
 gi|197085885|gb|ACH37156.1| molybdopterin-binding oxidoreductase [Geobacter bemidjiensis Bem]
          Length = 966

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 27/97 (27%), Gaps = 18/97 (18%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P E    +   +            +RCI C  C   C A+      G     G R     
Sbjct: 724 PEEDMYPAHEHKKHR--WGMAIDLQRCIGCGACAVACYAENNIPVIGKELVRGGREMAWL 781

Query: 97  DIDMIK--------------CIYCGL--CQEACPVDA 117
            +   +              C +C    C+  CPV A
Sbjct: 782 RVPPYRMPGDRLRYAWLPLHCQHCDAAPCEPVCPVFA 818



 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 1/37 (2%)

Query: 78  ITIESGPRCHDGTRRTVR-YDIDMIKCIYCGLCQEAC 113
              E         ++      ID+ +CI CG C  AC
Sbjct: 722 HRPEEDMYPAHEHKKHRWGMAIDLQRCIGCGACAVAC 758


>gi|83590738|ref|YP_430747.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica ATCC
           39073]
 gi|83573652|gb|ABC20204.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Moorella
           thermoacetica ATCC 39073]
          Length = 228

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
            R+    +RC+AC  C  +CPA AI     P           Y I    C++C  C E C
Sbjct: 154 WRFHINPDRCLACGRCRRVCPAGAIATNEAP--------GKSYRILPRYCLFCFACLEVC 205

Query: 114 PVDAIVEG 121
           P  +I   
Sbjct: 206 PRSSIELT 213



 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 6/57 (10%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                     +CP   +                R+ I+  +C+ CG C+  CP  AI
Sbjct: 128 FFTGAAWHRYLCPFGVLFSLPAGVSRW------RFHINPDRCLACGRCRRVCPAGAI 178


>gi|73538477|ref|YP_298844.1| formate dehydrogenase, alpha subunit [Ralstonia eutropha JMP134]
 gi|72121814|gb|AAZ64000.1| Formate dehydrogenase, alpha subunit [Ralstonia eutropha JMP134]
          Length = 937

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 5/76 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID----MIKCIYCGLCQEACP 114
             + CI C  C   C  +    +       G    + +D+D       C+ CG C +ACP
Sbjct: 154 NLDACIQCTRCVRACRDE-QVNDVIGLALRGDAARIVFDMDDPLGASTCVACGECVQACP 212

Query: 115 VDAIVEGPNFEFATET 130
             A++   +   A   
Sbjct: 213 TGALMPARDAALAVPD 228


>gi|21227069|ref|NP_632991.1| glutamate synthase, large chain [Methanosarcina mazei Go1]
 gi|20905394|gb|AAM30663.1| glutamate synthase, large chain [Methanosarcina mazei Go1]
          Length = 503

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 25/81 (30%), Gaps = 14/81 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++C+ C  C   C       E                I+  KC  C  C   CP DAI
Sbjct: 15  DRDQCMDCGRCIENCSYGVYRREGDKIL-----------IESRKCTACLRCVSMCPRDAI 63

Query: 119 VEGPNFEFATETRQELYYDKE 139
                 E   + R    + +E
Sbjct: 64  SIT---EKPVDYRSHPVWTRE 81


>gi|288561260|ref|YP_003424746.1| energy-converting hydrogenase B subunit K EhbK [Methanobrevibacter
           ruminantium M1]
 gi|288543970|gb|ADC47854.1| energy-converting hydrogenase B subunit K EhbK [Methanobrevibacter
           ruminantium M1]
          Length = 486

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 3/94 (3%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG---T 90
           I+ P +    +   + + +       E  C+ C LC+ IC  +AI               
Sbjct: 389 IHCPTDAIPKTTSTKYKISGGFNYIDENLCVKCGLCKDICGEEAIYTVDISNEDVNLGTK 448

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
            + +R+ +D  KCIYCG C   CP  + +    F
Sbjct: 449 NKNLRFVVDDDKCIYCGACMNICPSKSFIFEREF 482



 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 11/77 (14%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
            + R    +       + CI+C +C  +CP +AI++           +    ++D+ KCI
Sbjct: 334 EQARSFQTISWDGEVSDDCISCGICAELCPKEAISL-----------KRGTINVDLDKCI 382

Query: 105 YCGLCQEACPVDAIVEG 121
            C  C   CP DAI + 
Sbjct: 383 MCETCGIHCPTDAIPKT 399



 Score = 38.5 bits (88), Expect = 0.32,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 10/67 (14%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                    C++C  C  +C  QA + ++     +              CI CG+C E C
Sbjct: 313 NEDNKLFGYCVSCGKCTQVCNEQARSFQTISWDGE----------VSDDCISCGICAELC 362

Query: 114 PVDAIVE 120
           P +AI  
Sbjct: 363 PKEAISL 369



 Score = 38.2 bits (87), Expect = 0.35,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 10/72 (13%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            A+R   N    C+ C  C   CP  AI             +   Y +D  KC  CG+CQ
Sbjct: 21  EAIRFVDNKAFSCMCCGACFEACPNHAIFKN----------KYGGYVVDRAKCNGCGVCQ 70

Query: 111 EACPVDAIVEGP 122
             CP+++I    
Sbjct: 71  FTCPIESIHIDN 82



 Score = 37.4 bits (85), Expect = 0.60,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 3/65 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++CI C+ C   CP  AI   +  +            ID   C+ CGLC++ C  +AI
Sbjct: 377 DLDKCIMCETCGIHCPTDAIPKTTSTKYKISGGFN---YIDENLCVKCGLCKDICGEEAI 433

Query: 119 VEGPN 123
                
Sbjct: 434 YTVDI 438



 Score = 34.3 bits (77), Expect = 5.7,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 15/83 (18%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E      +              E+C+ C  C   CP +AI                    
Sbjct: 139 ENMKLPVKSDKSADRVCVSTDMEKCVKCGRCAYYCPTRAI---------------EVIIQ 183

Query: 99  DMIKCIYCGLCQEACPVDAIVEG 121
           D   C+ C +C++ CP  A+ +G
Sbjct: 184 DEGFCVGCKICEDLCPTGALKDG 206


>gi|261339612|ref|ZP_05967470.1| electron transport complex protein RnfC [Enterobacter cancerogenus
           ATCC 35316]
 gi|288318434|gb|EFC57372.1| electron transport complex protein RnfC [Enterobacter cancerogenus
           ATCC 35316]
          Length = 678

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 37/111 (33%), Gaps = 15/111 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ CI C  C   CPA  +  +       G         ++  CI CG C   CP    
Sbjct: 373 EEKGCIRCSACADACPAD-LLPQQLYWYSKGQLHDKAKAHNLADCIECGACAWVCP---- 427

Query: 119 VEGPNFEFATETRQE------LYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               N       RQE      +  + +R      R+E+   R +  +   R
Sbjct: 428 ---SNIPLVQYFRQEKAEIYAISMEDKRAAEAKARFEARQAR-LEREKAAR 474


>gi|197120393|ref|YP_002140820.1| pyruvate:ferredoxin oxidoreductase [Geobacter bemidjiensis Bem]
 gi|197089753|gb|ACH41024.1| pyruvate:ferredoxin oxidoreductase [Geobacter bemidjiensis Bem]
          Length = 1238

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/113 (20%), Positives = 34/113 (30%), Gaps = 20/113 (17%)

Query: 31  KTTINYPFEKGSTSPR--FRGEHALRRYPNGEERCIACKLCEAICPA------------- 75
             +   P      S     +   A+      +E CI C  C  ICP              
Sbjct: 659 PVSAFSPDGVFPFSTARFEKRGVAINVPEWIKENCIQCNQCSYICPHATIRPFLATDQEL 718

Query: 76  -QAITIESGPRCHDGTRRTVRYDI--DMIKCIYCGLCQEACP--VDAIVEGPN 123
             A         +    +   + I    + C+ CG C + CP  V A+V  P 
Sbjct: 719 SGAPESFETIPANAKEIKGHGFRIQVYTLDCMGCGNCADICPAKVSALVMKPI 771


>gi|77459665|ref|YP_349172.1| dihydropyrimidine dehydrogenase [Pseudomonas fluorescens Pf0-1]
 gi|77383668|gb|ABA75181.1| dihydropyrimidine dehydrogenase (NADP+) / dihydroorotate oxidase B,
           catalytic subunit [Pseudomonas fluorescens Pf0-1]
          Length = 424

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117
            +E CI C  C   C   +    S  +  DGT +   Y++   +C+ C LCQ  CPV D 
Sbjct: 341 DQEACIGCGRCHIACEDTSHQAISSLKQADGTHK---YEVIDDECVGCNLCQITCPVADC 397

Query: 118 IVEGP 122
           I   P
Sbjct: 398 IEMVP 402


>gi|73748521|ref|YP_307760.1| pyruvic-ferredoxin oxidoreductase, delta subunit [Dehalococcoides
           sp. CBDB1]
 gi|73660237|emb|CAI82844.1| pyruvic-ferredoxin oxidoreductase, delta subunit [Dehalococcoides
           sp. CBDB1]
          Length = 86

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 10/87 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E G+ S    G+   +   +  ++CI C +C   CP   I                 ++ 
Sbjct: 9   EPGNASQYKTGDWRSQLPIHNFKKCIKCGVCYIFCPEGCINETKEG----------FFEA 58

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFE 125
           D+  C  CG+C   CP  AIV     E
Sbjct: 59  DLFYCKGCGICAHECPTGAIVMKDEEE 85


>gi|114567216|ref|YP_754370.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114338151|gb|ABI68999.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 604

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 10/67 (14%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            L  +      C  C LC   CP + I  E              + I+  KCI CG C +
Sbjct: 545 ELSEFWIDPVICTGCGLCLPRCPVEGIKGEKKQA----------HWIESDKCIRCGECID 594

Query: 112 ACPVDAI 118
           +C   AI
Sbjct: 595 SCSFQAI 601



 Score = 37.8 bits (86), Expect = 0.58,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 17/40 (42%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            IE         R    + ID + C  CGLC   CPV+ I
Sbjct: 532 HIEGQRCPAGICRELSEFWIDPVICTGCGLCLPRCPVEGI 571


>gi|310779014|ref|YP_003967347.1| putative PAS/PAC sensor protein [Ilyobacter polytropus DSM 2926]
 gi|309748337|gb|ADO82999.1| putative PAS/PAC sensor protein [Ilyobacter polytropus DSM 2926]
          Length = 570

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 27/74 (36%), Gaps = 11/74 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           ++     E  C  C  C   C  +AI IE+               I   KCI CG C   
Sbjct: 1   MQVMNFSEANCKHCYKCVRKCEVKAIKIENDQAH-----------IMEDKCIACGQCFAI 49

Query: 113 CPVDAIVEGPNFEF 126
           CP +A     + +F
Sbjct: 50  CPQNARNIMSDLDF 63


>gi|309389388|gb|ADO77268.1| putative iron-sulfur protein [Halanaerobium praevalens DSM 2228]
          Length = 416

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 11/63 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E CI C  C   CP  AIT  +               ID   C+ CG+C  +CP  A+
Sbjct: 288 NYESCINCDKCLDACPIDAITKNNNQ-----------IKIDQDICLGCGVCVRSCPTKAL 336

Query: 119 VEG 121
              
Sbjct: 337 SLQ 339



 Score = 33.5 bits (75), Expect = 9.5,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPN 123
            ++   CI C  C +ACP+DAI +  N
Sbjct: 286 QLNYESCINCDKCLDACPIDAITKNNN 312


>gi|307262756|ref|ZP_07544383.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|306871901|gb|EFN03618.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 196

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 21/65 (32%), Gaps = 10/65 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ CI C  C   CP  AI   +             + +    C  C LC   CP + I
Sbjct: 105 HEDMCIGCTKCIQACPVDAIIGTNK----------AMHTVIPDLCTGCELCVAPCPTNCI 154

Query: 119 VEGPN 123
                
Sbjct: 155 EMVKQ 159



 Score = 38.2 bits (87), Expect = 0.42,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 14/25 (56%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           I    CI C  C +ACPVDAI+   
Sbjct: 104 IHEDMCIGCTKCIQACPVDAIIGTN 128


>gi|294677721|ref|YP_003578336.1| [pyruvate formate-lyase]-activating enzyme [Rhodobacter capsulatus
           SB 1003]
 gi|294476541|gb|ADE85929.1| [pyruvate formate-lyase]-activating enzyme-1 [Rhodobacter
           capsulatus SB 1003]
          Length = 305

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 16/78 (20%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI---- 118
           CI C  C  +CP  A++ ++                   KCI CG C + CP +A+    
Sbjct: 61  CIGCGKCIPVCPVGALSRDNPGFVDR------------AKCIRCGDCTKVCPTEALKRAG 108

Query: 119 VEGPNFEFATETRQELYY 136
                 E   E R++  +
Sbjct: 109 RRMSVAEVMQELRKDAIH 126


>gi|294889635|ref|XP_002772896.1| pyruvate:ferredoxin oxidoreductase/NADPH-cytochrome P450, putative
           [Perkinsus marinus ATCC 50983]
 gi|239877476|gb|EER04712.1| pyruvate:ferredoxin oxidoreductase/NADPH-cytochrome P450, putative
           [Perkinsus marinus ATCC 50983]
          Length = 1818

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 30/104 (28%), Gaps = 27/104 (25%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQ-----------------AITIESGPRCHDGTRRT 93
            AL       ++C  C  C   CP                   A    +     +     
Sbjct: 727 VALEVPEVDMDKCTQCNTCSMACPHAVIRPFLLSQYEVDNKPAAFDTRAAKGGAEVAGLH 786

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVE----------GPNFEFA 127
            R  +    C  C +C  ACP DA+            G N+E+A
Sbjct: 787 YRIQVSPYDCTGCEVCVNACPDDALSMKHLADVIETSGKNWEYA 830


>gi|163839921|ref|YP_001624327.1| N-succinyldiaminopimelate aminotransferase [Renibacterium
           salmoninarum ATCC 33209]
 gi|162953397|gb|ABY22912.1| ferredoxin [Renibacterium salmoninarum ATCC 33209]
          Length = 539

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 35/101 (34%), Gaps = 17/101 (16%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           I  K C   CP   I                   I   +C+ CG C+  CPV+AI    +
Sbjct: 52  IKDKACIEECPVDCIYEGE-----------RSLYIHPDECVDCGACEPVCPVEAIYYEDD 100

Query: 124 F--EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPY 162
              E+A   +     + E     G    +  V +  TD PY
Sbjct: 101 VPEEWADYYKA----NVEFFNEIGSPGGAAKVGSTGTDHPY 137



 Score = 33.9 bits (76), Expect = 8.3,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 3/63 (4%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E+      + GE +L  +P+    C+ C  CE +CP +AI  E               + 
Sbjct: 59  EECPVDCIYEGERSLYIHPDE---CVDCGACEPVCPVEAIYYEDDVPEEWADYYKANVEF 115

Query: 99  DMI 101
              
Sbjct: 116 FNE 118


>gi|126207654|ref|YP_001052879.1| electron transport complex protein RnfB [Actinobacillus
           pleuropneumoniae L20]
 gi|307256192|ref|ZP_07537979.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|126096446|gb|ABN73274.1| electron transport complex protein RnfB [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
 gi|306865373|gb|EFM97269.1| Electron transport complex protein rnfB [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 196

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 21/65 (32%), Gaps = 10/65 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ CI C  C   CP  AI   +             + +    C  C LC   CP + I
Sbjct: 105 HEDMCIGCTKCIQACPVDAIIGTNK----------AMHTVIPDLCTGCELCVAPCPTNCI 154

Query: 119 VEGPN 123
                
Sbjct: 155 EMVKQ 159



 Score = 38.2 bits (87), Expect = 0.42,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 14/25 (56%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           I    CI C  C +ACPVDAI+   
Sbjct: 104 IHEDMCIGCTKCIQACPVDAIIGTN 128


>gi|91772586|ref|YP_565278.1| formylmethanofuran dehydrogenase, subunit F [Methanococcoides
           burtonii DSM 6242]
 gi|91711601|gb|ABE51528.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methanococcoides burtonii DSM 6242]
          Length = 436

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 1/74 (1%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               +RC+ C +C  ICP +A+ +        G        +++ KC +C +C   CPV+
Sbjct: 35  DYDYKRCVGCGICVRICPTRALELGPMKEIATGLDAPPVM-MELDKCTFCSMCVNFCPVN 93

Query: 117 AIVEGPNFEFATET 130
           A+      +F  E 
Sbjct: 94  ALEMRSEGDFPKED 107



 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 4/87 (4%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           EK  T+        L    +    C  C LC+ ICP  AI    G +  +    + +  +
Sbjct: 184 EKEPTATDPMPFEQLIIDED---SCDYCTLCQDICPEDAIK-VKGEKPCEAPEVSGKVTV 239

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFE 125
           D  KC  CG C   CP DA+     FE
Sbjct: 240 DDAKCTRCGWCDAVCPYDAVDMLKPFE 266



 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 6/75 (8%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRT--VRYDIDMIKCIYCGLCQEACPVDAI 118
           ++C  C +C   CP  A+ + S        +     ++     KC+ C LC+  CP DAI
Sbjct: 78  DKCTFCSMCVNFCPVNALEMRSEGDFPKEDQYPRLEQFVRMNEKCVPCSLCEATCPEDAI 137

Query: 119 VEGPNFEFATETRQE 133
                 E+    +++
Sbjct: 138 ----ELEYTFPKKED 148



 Score = 42.4 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++C  C +C   C   A  +              +  ID   C YC LCQ+ CP DAI
Sbjct: 163 DNDKCNLCGICARFC--DAFLMLEKEPTATDPMPFEQLIIDEDSCDYCTLCQDICPEDAI 220



 Score = 37.8 bits (86), Expect = 0.53,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 27/79 (34%), Gaps = 9/79 (11%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P++       F GE  L      +     C  C  ICP+            DG      
Sbjct: 254 CPYDAVDMLKPFEGELMLVESHIQKCDAQGCHACFNICPSHLWY-----VPDDGKNIAAV 308

Query: 96  YDIDMIKCIYCGLCQEACP 114
           YD+    C YCG C  ACP
Sbjct: 309 YDL----CTYCGACVNACP 323



 Score = 35.1 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCI 104
              L ++    E+C+ C LCEA CP  AI +E                    +ID  KC 
Sbjct: 109 YPRLEQFVRMNEKCVPCSLCEATCPEDAIELEYTFPKKEDIAPLKENAEGEIEIDNDKCN 168

Query: 105 YCGLCQEAC 113
            CG+C   C
Sbjct: 169 LCGICARFC 177


>gi|77360046|ref|YP_339621.1| electron transport complex protein RnfC [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76874957|emb|CAI86178.1| Electron transport complex protein rnfC [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 846

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 2/92 (2%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C  C   CPA  +  +               + ++  CI CG C   CP   I    
Sbjct: 377 CIRCSACADACPAS-LLPQQLQWFAKSKEYDKLQEHNLFDCIECGACAYVCP-SEIPLVQ 434

Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVR 154
            +  A    +E   +K +     +R+++   R
Sbjct: 435 YYRVAKVEIKEQQAEKIKADRAKERFDARKER 466


>gi|328952778|ref|YP_004370112.1| formate dehydrogenase, alpha subunit [Desulfobacca acetoxidans DSM
           11109]
 gi|328453102|gb|AEB08931.1| formate dehydrogenase, alpha subunit [Desulfobacca acetoxidans DSM
           11109]
          Length = 898

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 26/91 (28%), Gaps = 3/91 (3%)

Query: 31  KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC---PAQAITIESGPRCH 87
           +  I  P         +  E           +CI C  C   C                H
Sbjct: 118 RYNIPAPSFAFPPETPYHLEDNKNLIRRDLSKCIMCGRCVRACKERQVNNAISIGYRGSH 177

Query: 88  DGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           +              C++CG C +ACPV A+
Sbjct: 178 NKIVTMADSSYGDSDCVFCGECVQACPVGAL 208


>gi|311031550|ref|ZP_07709640.1| dihydropyrimidine dehydrogenase [Bacillus sp. m3-13]
          Length = 428

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 4/63 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117
            ++ CI C  C   C   +       +   G        +    C+ C LC   CPV DA
Sbjct: 338 NQDTCINCNKCHIACEDTSHQCIDMLKNSSGKSYL---QVREEDCVGCNLCSIVCPVEDA 394

Query: 118 IVE 120
           I  
Sbjct: 395 ITM 397


>gi|308275218|emb|CBX31815.1| hypothetical protein N47_N26400 [uncultured Desulfobacterium sp.]
          Length = 830

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 29/80 (36%), Gaps = 3/80 (3%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM--- 100
           SP+++ E++         +CI C+ C   C    I             R           
Sbjct: 607 SPKYKIENSHPFITVDPNKCIVCRRCAVGCDNYQIQYAIKVDEVSDENRIGPPQYAPNIN 666

Query: 101 IKCIYCGLCQEACPVDAIVE 120
            KC+ CGLC   CP  A+ E
Sbjct: 667 DKCVDCGLCVGNCPTGALQE 686


>gi|303228470|ref|ZP_07315301.1| pyruvate synthase [Veillonella atypica ACS-134-V-Col7a]
 gi|302516828|gb|EFL58739.1| pyruvate synthase [Veillonella atypica ACS-134-V-Col7a]
          Length = 1179

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 29/90 (32%), Gaps = 17/90 (18%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQ------------AITIESGPRCHDGTRRTVRYDI 98
            AL       E CI C  C  +CP              A   E          + +++ I
Sbjct: 682 PALFVPKWMPENCIQCNQCSFVCPHATIRPILATEAEVAAAPEHFDTIPALGAKDLQFRI 741

Query: 99  --DMIKCIYCGLCQEACPVD---AIVEGPN 123
               + C+ CG C + CP     AIV    
Sbjct: 742 AVSPLDCLGCGNCVDICPAPKGKAIVMTSI 771


>gi|303231857|ref|ZP_07318568.1| pyruvate synthase [Veillonella atypica ACS-049-V-Sch6]
 gi|302513464|gb|EFL55495.1| pyruvate synthase [Veillonella atypica ACS-049-V-Sch6]
          Length = 1179

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 29/90 (32%), Gaps = 17/90 (18%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQ------------AITIESGPRCHDGTRRTVRYDI 98
            AL       E CI C  C  +CP              A   E          + +++ I
Sbjct: 682 PALFVPKWMPENCIQCNQCSFVCPHATIRPILATEAEVAAAPEHFDTIPALGAKDLQFRI 741

Query: 99  --DMIKCIYCGLCQEACPVD---AIVEGPN 123
               + C+ CG C + CP     AIV    
Sbjct: 742 AVSPLDCLGCGNCVDICPAPKGKAIVMTSI 771


>gi|257459837|ref|ZP_05624943.1| ferredoxin-type protein, NapH/MauN family [Campylobacter gracilis
           RM3268]
 gi|257442689|gb|EEV17826.1| ferredoxin-type protein, NapH/MauN family [Campylobacter gracilis
           RM3268]
          Length = 300

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 29/70 (41%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L +    + RC  C +C+ +C    +   +  +  +      ++ +  I C  CG C + 
Sbjct: 225 LSKITWDKSRCDHCGVCQDVCFVSHVLDITKKKASENLGDKSKFMLKGIDCTLCGRCIDV 284

Query: 113 CPVDAIVEGP 122
           C  DA+  G 
Sbjct: 285 CHQDALSIGN 294


>gi|253989598|ref|YP_003040954.1| electron transport complex protein RnfC [Photorhabdus asymbiotica
           subsp. asymbiotica ATCC 43949]
 gi|253781048|emb|CAQ84210.1| electron transport complex protein rnfc [Photorhabdus asymbiotica]
          Length = 706

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           CI C LC   CPA  +  +       G       + ++  CI CG C   CP
Sbjct: 377 CIRCGLCVEACPAS-LLPQQLYWFSRGQEHEKARNHNLFDCIECGACAYVCP 427



 Score = 37.4 bits (85), Expect = 0.75,   Method: Composition-based stats.
 Identities = 10/15 (66%), Positives = 10/15 (66%)

Query: 100 MIKCIYCGLCQEACP 114
              CI CGLC EACP
Sbjct: 374 EEACIRCGLCVEACP 388


>gi|296110007|ref|YP_003616956.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus infernus ME]
 gi|295434821|gb|ADG13992.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus infernus ME]
          Length = 136

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 26/81 (32%), Gaps = 16/81 (19%)

Query: 59  GEERCIACKLCEAICPAQ-----------AITIESGPR-----CHDGTRRTVRYDIDMIK 102
               CI+C  CE ICP                 E  P           R   +  I   K
Sbjct: 3   NPSLCISCGKCERICPKNGIFIIDNVPIRCYHCEGNPCLLACPKEAIKRINGKVVIIEEK 62

Query: 103 CIYCGLCQEACPVDAIVEGPN 123
           CI CGLC  ACP  AI     
Sbjct: 63  CIGCGLCALACPFGAIKMSRI 83


>gi|189423730|ref|YP_001950907.1| molybdopterin oxidoreductase [Geobacter lovleyi SZ]
 gi|189419989|gb|ACD94387.1| molybdopterin oxidoreductase [Geobacter lovleyi SZ]
          Length = 808

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 1/72 (1%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            +   RCI C+ C  +C           +               + C +CG C  ACP  
Sbjct: 151 ESDPNRCILCEKCVKVCREITGVGAIETQSCGDRAVVETVSGKPLDCDFCGNCIAACPTG 210

Query: 117 AIVEGPNFEFAT 128
            ++  P F+FA 
Sbjct: 211 TLISKP-FKFAG 221


>gi|114048689|ref|YP_739239.1| formate dehydrogenase subunit alpha [Shewanella sp. MR-7]
 gi|113890131|gb|ABI44182.1| formate dehydrogenase, alpha subunit [Shewanella sp. MR-7]
          Length = 1432

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 24/75 (32%), Gaps = 15/75 (20%)

Query: 59  GEERCIACKLCEAICP--------------AQAITIESGPRCHD-GTRRTVRYDIDMIKC 103
              RCI+C  C  +C                QA+  E          R      +    C
Sbjct: 651 DANRCISCGKCVDVCQLQSGHCAIQFSQDSYQALPQEMTQHMERRAPRVGFSASMADSHC 710

Query: 104 IYCGLCQEACPVDAI 118
           + CG C + CP  A+
Sbjct: 711 VQCGNCVQVCPTGAL 725


>gi|127511743|ref|YP_001092940.1| formate dehydrogenase, alpha subunit [Shewanella loihica PV-4]
 gi|126637038|gb|ABO22681.1| formate dehydrogenase, alpha subunit [Shewanella loihica PV-4]
          Length = 1410

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 15/75 (20%)

Query: 59  GEERCIACKLCEAICP----AQAITIESG-----------PRCHDGTRRTVRYDIDMIKC 103
              RCI+C  C A+C      QAI+ E                    R      +   +C
Sbjct: 630 DPNRCISCGACVAMCRQQSGHQAISFEPDSYLALPQEMAATHSRQAPRAGFSATMADSQC 689

Query: 104 IYCGLCQEACPVDAI 118
           + CG C + CP  A+
Sbjct: 690 VQCGNCVQVCPTGAL 704


>gi|317484913|ref|ZP_07943802.1| glycyl-radical enzyme activating family protein [Bilophila
           wadsworthia 3_1_6]
 gi|316923851|gb|EFV45048.1| glycyl-radical enzyme activating family protein [Bilophila
           wadsworthia 3_1_6]
          Length = 296

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 33/103 (32%), Gaps = 19/103 (18%)

Query: 19  AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78
                +   F     ++ P+     S  F+ +            C+ C  CE ICP  A+
Sbjct: 18  GLRTTV---FLKGCPLHCPWCSNPESQSFKPQLMFF-----SNLCVGCGACERICPNGAV 69

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
                            Y+ D   C  CGLC E+CP  A    
Sbjct: 70  VKIGD-----------VYNRDRSICTDCGLCVESCPSKAREMS 101


>gi|310778437|ref|YP_003966770.1| hydrogenase, Fe-only [Ilyobacter polytropus DSM 2926]
 gi|309747760|gb|ADO82422.1| hydrogenase, Fe-only [Ilyobacter polytropus DSM 2926]
          Length = 572

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY---DIDMIKCIYCGLCQEACPV 115
              +CI C+ C A+C              DG +  V     ++   KCI CG C + CPV
Sbjct: 141 DMNKCIKCEKCVAVCKDIQGIGVYDVEVVDGEKEIVLVGGKNLSETKCISCGQCVKVCPV 200

Query: 116 DAIVEGP 122
            A+VE  
Sbjct: 201 GALVENN 207


>gi|298675829|ref|YP_003727579.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Methanohalobium evestigatum Z-7303]
 gi|298288817|gb|ADI74783.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanohalobium evestigatum Z-7303]
          Length = 541

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/143 (18%), Positives = 40/143 (27%), Gaps = 28/143 (19%)

Query: 1   MRIFRCNVSFLFLKEF---VGAF-------FLCLRYFFKAKTTINYP--FEKGSTSPRFR 48
           M          ++ E                L      K    +  P   ++        
Sbjct: 400 MMATSETFKNFYIFELSYWTQGMPIETYNEMLGFYNLPKLPEMVRNPVIEKRVEKDIANV 459

Query: 49  GEHALRRYPN-------GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
           G+  +    N         + CI C  CE  CP  AITI             +  + +  
Sbjct: 460 GKEGIETIGNVGIILEEITDGCIFCHKCEEECPEDAITILDTDEG-------LIANYNAQ 512

Query: 102 KCIY--CGLCQEACPVDAIVEGP 122
           +C+   C  C   CPV+AI    
Sbjct: 513 RCLGTSCRRCVGICPVNAIKYED 535


>gi|257063357|ref|YP_003143029.1| dissimilatory sulfite reductase (desulfoviridin), alpha/beta
           subunit [Slackia heliotrinireducens DSM 20476]
 gi|256791010|gb|ACV21680.1| dissimilatory sulfite reductase (desulfoviridin), alpha/beta
           subunit [Slackia heliotrinireducens DSM 20476]
          Length = 425

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 20/53 (37%), Gaps = 11/53 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C A C +  I                R  ID  KCI CG C   CP +AI
Sbjct: 36  CNRCAAACVSGCINTHDN-----------RIAIDAEKCIGCGTCATVCPTEAI 77



 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 15/89 (16%), Positives = 24/89 (26%), Gaps = 27/89 (30%)

Query: 59  GEERCIACKLCEAICPAQA---------------------------ITIESGPRCHDGTR 91
            +  C  C++C   CP  A                            T +  P   +   
Sbjct: 290 DQNLCNGCQMCAVFCPTAAIAKRVDENPSAAPAKLYRAPSNPNRTSQTAQDKPAFANPFA 349

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           +  +       C+ CG C   CP  A+  
Sbjct: 350 KRTQLLHAPSLCVQCGTCAAICPKHAVRL 378


>gi|209521899|ref|ZP_03270571.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           sp. H160]
 gi|209497674|gb|EDZ97857.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           sp. H160]
          Length = 173

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 23/64 (35%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ CI C LC   CP  AI                 + +    C  C LC   CPVD I
Sbjct: 83  DEQVCIGCTLCMQACPVDAIVGAPKQ----------MHTVIAELCTGCDLCVPPCPVDCI 132

Query: 119 VEGP 122
              P
Sbjct: 133 AMLP 136



 Score = 35.1 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/21 (66%), Positives = 15/21 (71%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C LC +ACPVDAI
Sbjct: 82  IDEQVCIGCTLCMQACPVDAI 102


>gi|253701525|ref|YP_003022714.1| electron transfer flavoprotein subunit alpha [Geobacter sp. M21]
 gi|251776375|gb|ACT18956.1| Electron transfer flavoprotein alpha subunit [Geobacter sp. M21]
          Length = 452

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 44/122 (36%), Gaps = 30/122 (24%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACK-LCEAICPAQAITIESGPRCHDGTRRTVRYD 97
           E      + RG+  L      E +CIAC   C++ CP   I +                 
Sbjct: 3   EAKPKLKKPRGKVRLL-----EGKCIACGARCQSSCPVDGIQMNDAGEP----------Q 47

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIV 157
           I++ KCI C  C +ACP  A+              E++Y KE L         + + +  
Sbjct: 48  IELSKCIGCLKCVKACPGSAL--------------EIFYSKEELEILAALAGQQDLADDE 93

Query: 158 TD 159
            D
Sbjct: 94  AD 95


>gi|170756656|ref|YP_001780591.1| anaerobic sulfite reductase, subunit C [Clostridium botulinum B1
           str. Okra]
 gi|169121868|gb|ACA45704.1| anaerobic sulfite reductase, subunit C [Clostridium botulinum B1
           str. Okra]
          Length = 321

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 23/88 (26%), Gaps = 8/88 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +         G   +      + RC+ C+ C   C  +A                  
Sbjct: 145 CPNDCIKARMHDFGILGMTEPQYDKYRCVGCQACVNNCKKRATGALRFENFKVIRDH--- 201

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                 KCI CG C   CP  A      
Sbjct: 202 -----EKCIGCGECVGKCPTGAWTRSKE 224


>gi|134046385|ref|YP_001097870.1| thiamine pyrophosphate binding domain-containing protein
           [Methanococcus maripaludis C5]
 gi|132664010|gb|ABO35656.1| thiamine pyrophosphate enzyme domain protein TPP-binding protein
           [Methanococcus maripaludis C5]
          Length = 612

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/91 (26%), Positives = 34/91 (37%), Gaps = 17/91 (18%)

Query: 38  FEKGSTSPRFRGEHA-----LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              G ++  FRG         ++Y   + +C +CK+C       AIT+            
Sbjct: 533 EYNGPSAVVFRGNCVSLVKSTKKYVIDKNKCTSCKICVERLGCPAITLSEKIPE------ 586

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                  M  C  CGLC+  CP DAI E   
Sbjct: 587 ------IMETCTGCGLCKAVCPADAINEVDE 611


>gi|15642974|ref|NP_228016.1| NADP-reducing hydrogenase, subunit D, putative [Thermotoga maritima
           MSB8]
 gi|4980698|gb|AAD35293.1|AE001705_4 NADP-reducing hydrogenase, subunit D, putative [Thermotoga maritima
           MSB8]
          Length = 608

 Score = 46.2 bits (108), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 3/65 (4%)

Query: 59  GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDI--DMIKCIYCGLCQEACPV 115
              +CI C+ C   C   Q + I S       T     +D+      CI CG C   CP 
Sbjct: 170 DLSKCIKCQRCVRACSELQGMHIYSMVERGHRTYPGTPFDMPVYETDCIGCGQCAAFCPT 229

Query: 116 DAIVE 120
            AIVE
Sbjct: 230 GAIVE 234


>gi|325972134|ref|YP_004248325.1| hydrogenase, Fe-only [Spirochaeta sp. Buddy]
 gi|324027372|gb|ADY14131.1| hydrogenase, Fe-only [Spirochaeta sp. Buddy]
          Length = 582

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 22/68 (32%), Gaps = 3/68 (4%)

Query: 59  GEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
             E+CI C  C  +C            G              ++   C+ CG C   CPV
Sbjct: 144 DPEKCIKCGRCVQVCQDLQGVFALEFIGRGDETCMAPAAMLKLEDSPCVRCGQCAAHCPV 203

Query: 116 DAIVEGPN 123
            AI E   
Sbjct: 204 GAIYEKDE 211


>gi|317489724|ref|ZP_07948227.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|316911190|gb|EFV32796.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
          Length = 394

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 11/53 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C  +C +  I+ +                I+  +CI CG C   CP  A+
Sbjct: 36  CMKCADVCTSGCISYDDNELV-----------IEPERCIGCGTCATVCPTCAL 77



 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 6/65 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E+C +C++C   CP  AI   +      G           + C+ C  C + CP  A+
Sbjct: 291 DPEKCSSCQMCATFCPTGAIAKYADEDGSIG------VTHRPVDCVKCRCCTDICPEGAL 344

Query: 119 VEGPN 123
                
Sbjct: 345 ELSDE 349


>gi|317471698|ref|ZP_07931039.1| iron only hydrogenase large subunit domain-containing protein
           [Anaerostipes sp. 3_2_56FAA]
 gi|316900802|gb|EFV22775.1| iron only hydrogenase large subunit domain-containing protein
           [Anaerostipes sp. 3_2_56FAA]
          Length = 561

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 23/82 (28%), Gaps = 3/82 (3%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---YDIDMIKCIYCGLCQE 111
                  +CI C  C   C                  +       D+    C+ CG C+ 
Sbjct: 137 CIIRDPNKCILCGDCVRTCDEIQGMGILDFAFRGSKMQVTTAFNKDLAQTDCVGCGQCRA 196

Query: 112 ACPVDAIVEGPNFEFATETRQE 133
            CP  AI    + E   E   +
Sbjct: 197 VCPTGAITIKQDIERVWEALSD 218


>gi|312886520|ref|ZP_07746128.1| dihydropyrimidine dehydrogenase (NADP+) ;dihydrouracil
           dehydrogenase (NAD+) ;dihydroorotate oxidase B,
           catalytic subunit [Mucilaginibacter paludis DSM 18603]
 gi|311300923|gb|EFQ77984.1| dihydropyrimidine dehydrogenase (NADP+) ;dihydrouracil
           dehydrogenase (NAD+) ;dihydroorotate oxidase B,
           catalytic subunit [Mucilaginibacter paludis DSM 18603]
          Length = 422

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 5/71 (7%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
           +        +++C+ C LC   C     T         G      Y I   +C+ C LC 
Sbjct: 331 NYHVIANINQDKCVHCGLCYIACED---TSHQSIALDYGKPYNK-YTIKEEECVGCNLCN 386

Query: 111 EACPV-DAIVE 120
             CPV D I  
Sbjct: 387 LVCPVDDCITM 397


>gi|170726903|ref|YP_001760929.1| electron transport complex protein RnfB [Shewanella woodyi ATCC
           51908]
 gi|169812250|gb|ACA86834.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           woodyi ATCC 51908]
          Length = 189

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 24/85 (28%), Gaps = 10/85 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
            +             +     E+ CI C  C   CP  AI                 + +
Sbjct: 90  VEPEPLTVSEEVQVKKVAYIREDECIGCTKCIQACPVDAILGTGKQ----------MHTV 139

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPN 123
               C  C LC   CPVD I   P 
Sbjct: 140 ITDYCTGCDLCVAPCPVDCIDMLPI 164


>gi|77463755|ref|YP_353259.1| dihydropyrimidine dehydrogenase [Rhodobacter sphaeroides 2.4.1]
 gi|77388173|gb|ABA79358.1| dihydroorotate oxidase B, catalytic subunit / dihydropyrimidine
           dehydrogenase (NADP+) / dihydrouracil dehydrogenase
           (NAD+) [Rhodobacter sphaeroides 2.4.1]
          Length = 434

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 8/76 (10%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI C  C A C       E              + +   +C+ 
Sbjct: 330 QYLNLNYVTKAEIDQDLCIKCGRCYAAC-------EDTSHQAIAMSTDRTFTVKDEECVA 382

Query: 106 CGLCQEACPV-DAIVE 120
           C LC + CPV D I  
Sbjct: 383 CNLCVDVCPVEDCITM 398


>gi|21674446|ref|NP_662511.1| pyruvate flavodoxin/ferrodoxin oxidoreductase [Chlorobium tepidum
           TLS]
 gi|21647632|gb|AAM72853.1| pyruvate flavodoxin/ferrodoxin oxidoreductase [Chlorobium tepidum
           TLS]
          Length = 1185

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 22/71 (30%), Gaps = 16/71 (22%)

Query: 60  EERCIACKLCEAICPAQAITIESGP----------------RCHDGTRRTVRYDIDMIKC 103
            E CI C  C  +CP  AI I+                   +  +         I    C
Sbjct: 691 PELCIECGKCSMVCPHAAIRIKVYEPKHLENAPATFKSLDAKAKNWEGMRYTVQIAPEDC 750

Query: 104 IYCGLCQEACP 114
             C LC  ACP
Sbjct: 751 TGCQLCVNACP 761



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 11/27 (40%), Gaps = 1/27 (3%)

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEF 126
              CI CG C   CP  AI     +E 
Sbjct: 691 PELCIECGKCSMVCPHAAIRI-KVYEP 716


>gi|134298016|ref|YP_001111512.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfotomaculum reducens MI-1]
 gi|134050716|gb|ABO48687.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Desulfotomaculum reducens MI-1]
          Length = 1010

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              + +C+AC +C  +CPA+A T+ +  R +         DI+   C  CG C  +C   
Sbjct: 935 YVDKRKCMACGVCVEVCPAKAATLVTDERGN------TVADINPALCKGCGACSSSCRCG 988

Query: 117 AIV 119
           AI 
Sbjct: 989 AIN 991



 Score = 40.9 bits (94), Expect = 0.067,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 26/98 (26%), Gaps = 16/98 (16%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPA---QAITIESGPRCHDGTRRTVR----Y 96
              F+     +       +C  C  C   CP     A       R              Y
Sbjct: 91  PGNFKVTIRTKARYIDVNKCTGCGSCAEACPVKVDDAFNQGLNKRKAIYKLYAQAFPNAY 150

Query: 97  DIDMIKCIY---------CGLCQEACPVDAIVEGPNFE 125
            ID  KC+          CG C +AC   AI      E
Sbjct: 151 AIDSSKCLKFKNLSNDKLCGKCIKACQAGAINHHMQDE 188



 Score = 40.9 bits (94), Expect = 0.068,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 30/86 (34%), Gaps = 9/86 (10%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCI------ACKLC---EAICPAQAITIESGPRCHDG 89
           E+                 N    CI       C       ++  ++ + +E  P     
Sbjct: 37  EREPAIGGTMPMLDKTFPTNDCSMCILSPKLVDCGRHLNVNSMTNSEVVGLEGEPGNFKV 96

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPV 115
           T RT    ID+ KC  CG C EACPV
Sbjct: 97  TIRTKARYIDVNKCTGCGSCAEACPV 122


>gi|306821256|ref|ZP_07454869.1| pyruvate:ferredoxin oxidoreductase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304550697|gb|EFM38675.1| pyruvate:ferredoxin oxidoreductase [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 1179

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 21/70 (30%), Gaps = 16/70 (22%)

Query: 61  ERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV-------------RYDIDMIKCI 104
           E CI C  C  +CP  AI     +   +                      R  +    C 
Sbjct: 688 ENCIQCNQCAFVCPHAAIRPYLLDEKQKADAPEGFDTLKAVGKGLEGLEYRIQVSPYDCT 747

Query: 105 YCGLCQEACP 114
            CG C + CP
Sbjct: 748 GCGNCVDVCP 757


>gi|262396694|ref|YP_003288547.1| formate dehydrogenase-O major subunit [Vibrio sp. Ex25]
 gi|262340288|gb|ACY54082.1| formate dehydrogenase-O major subunit [Vibrio sp. Ex25]
          Length = 1387

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 28/84 (33%), Gaps = 19/84 (22%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM------------------ 100
              RCI+C  C   C  QA+            R  +R D                     
Sbjct: 601 DANRCISCGQCIQACREQAVHGVLSFVSDKNGRPALRPDDRPRFRSDEKGASCSGLTLMG 660

Query: 101 -IKCIYCGLCQEACPVDAIVEGPN 123
              C+ CG C +ACP  A+V+  +
Sbjct: 661 NSNCVQCGACVQACPTGAMVDSRD 684



 Score = 33.9 bits (76), Expect = 8.1,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 21/72 (29%), Gaps = 4/72 (5%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P ++       +G         G   C+ C  C   CP  A+            +     
Sbjct: 638 PDDRPRFRSDEKGASCSGLTLMGNSNCVQCGACVQACPTGAMVDSRDRSQGRTEQLKAVD 697

Query: 97  DIDMIKCIYCGL 108
            I    C YCG+
Sbjct: 698 TI----CTYCGV 705


>gi|262375913|ref|ZP_06069144.1| electron transport complex protein [Acinetobacter lwoffii SH145]
 gi|262309007|gb|EEY90139.1| electron transport complex protein [Acinetobacter lwoffii SH145]
          Length = 263

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 29/85 (34%), Gaps = 10/85 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E+     +  G     +    E+ CI C  C + CP  AI               + + I
Sbjct: 68  EESVWPVQADGRPQRIKAVIREDECIGCTKCISACPVDAIIGSGK----------LMHTI 117

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPN 123
               C  C LC   CPVD I    +
Sbjct: 118 LTDLCTGCELCIPPCPVDCIDLVED 142


>gi|253742091|gb|EES98943.1| Nitroreductase family protein fused to ferredoxin domain Fd-NR1
           [Giardia intestinalis ATCC 50581]
          Length = 277

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 23/67 (34%), Gaps = 8/67 (11%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           R     E+ CI C +C   CP Q I +    R      +          CI CG C   C
Sbjct: 3   RFPEVDEDLCIGCNVCVQGCPTQCIEVNKKTRKLVFRAK--------EACISCGHCASVC 54

Query: 114 PVDAIVE 120
              AI  
Sbjct: 55  RTAAISM 61


>gi|298527852|ref|ZP_07015256.1| Cobyrinic acid ac-diamide synthase [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298511504|gb|EFI35406.1| Cobyrinic acid ac-diamide synthase [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 297

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 22/65 (33%), Gaps = 14/65 (21%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            + C  C LC A C  QAI+ +              Y +    C  C LC   CP  A+ 
Sbjct: 65  PDLCTGCGLCRAYCRFQAISED--------------YRVMQEHCEGCALCLHVCPESAVS 110

Query: 120 EGPNF 124
                
Sbjct: 111 MHDRH 115


>gi|225026034|ref|ZP_03715226.1| hypothetical protein EUBHAL_00273 [Eubacterium hallii DSM 3353]
 gi|224956640|gb|EEG37849.1| hypothetical protein EUBHAL_00273 [Eubacterium hallii DSM 3353]
          Length = 1185

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 34/111 (30%), Gaps = 19/111 (17%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTR- 91
           FE G+++   RG        N  E CI C  C  +C    I       +      D  + 
Sbjct: 673 FELGASAYEKRGTAVSVPEWN-PEACIQCNQCAFVCSHATIRPFLVSEDEIKAAPDNMKV 731

Query: 92  ---------RTVRYDIDMIKCIYCGLCQEACP---VDAIVEGPNFEFATET 130
                          +  + C+ CG C   CP     A+   P    A E 
Sbjct: 732 ADTKPKASEYKFTMSVSPLDCMGCGECITVCPAAAKGALKMVPQESQAAEQ 782


>gi|167042506|gb|ABZ07231.1| putative 4Fe-4S binding domain protein [uncultured marine
           crenarchaeote HF4000_ANIW133C7]
          Length = 99

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 1/68 (1%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C LC  IC      +        G +R   +     +CI  G C   CP  AI  
Sbjct: 12  QMCIGCALCVEICTTLGPDVLRVKPVE-GWKRGKAFVFYPERCISDGACIGVCPTKAIFW 70

Query: 121 GPNFEFAT 128
               +F  
Sbjct: 71  MRPMDFTV 78


>gi|154495028|ref|ZP_02034033.1| hypothetical protein PARMER_04074 [Parabacteroides merdae ATCC
           43184]
 gi|154085578|gb|EDN84623.1| hypothetical protein PARMER_04074 [Parabacteroides merdae ATCC
           43184]
          Length = 336

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 30/97 (30%), Gaps = 16/97 (16%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P  +         +            CI C  C   CP +AIT+E+              
Sbjct: 193 PKSRRVFVSCVNKDKGGVAKKACANACIGCGKCAKECPFEAITVENN-----------VA 241

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
            ID  KC  C  C   CP  AI      E     R+E
Sbjct: 242 YIDYTKCRLCRKCVAVCPTGAI-----HELNFPPRKE 273



 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 8/81 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCH--------DGTRRTVRYDIDMIKCIYCGLCQ 110
            E++C +C  C   CP   I +               +  +  V        CI CG C 
Sbjct: 167 DEDKCTSCGACVKACPKNIIELRKKGPKSRRVFVSCVNKDKGGVAKKACANACIGCGKCA 226

Query: 111 EACPVDAIVEGPNFEFATETR 131
           + CP +AI    N  +   T+
Sbjct: 227 KECPFEAITVENNVAYIDYTK 247



 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 9/60 (15%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+    C A C   AI I                ++D  KC  CG C +ACP + I    
Sbjct: 140 CLGYGDCVAACNFDAIHINLETGLP---------EVDEDKCTSCGACVKACPKNIIELRK 190


>gi|153940709|ref|YP_001390315.1| anaerobic sulfite reductase, subunit C [Clostridium botulinum F
           str. Langeland]
 gi|152936605|gb|ABS42103.1| anaerobic sulfite reductase, subunit C [Clostridium botulinum F
           str. Langeland]
 gi|295318405|gb|ADF98782.1| anaerobic sulfite reductase, subunit C [Clostridium botulinum F
           str. 230613]
          Length = 321

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 23/88 (26%), Gaps = 8/88 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +         G   +      E RC+ C+ C   C  +A                  
Sbjct: 145 CPNDCIKARMHDFGILGMTEPQYDEYRCVGCQACVNNCKKRATGALRFENYKVIRDH--- 201

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                 KCI CG C   CP  A      
Sbjct: 202 -----EKCIGCGECVGKCPTGAWTRSKE 224


>gi|189346155|ref|YP_001942684.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Chlorobium limicola DSM 245]
 gi|189340302|gb|ACD89705.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Chlorobium limicola DSM 245]
          Length = 1186

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 23/98 (23%), Gaps = 24/98 (24%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA--------------- 77
           T    FEK + +                + CI C  C  +CP  A               
Sbjct: 672 TGTSKFEKRNLAENIPVW--------EPDLCIQCGKCSLVCPHAAIRAKVYDANYLANAP 723

Query: 78  -ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                   +            I    C  C +C   CP
Sbjct: 724 KTFKCIDAKGASWAGMKYTIQIAPEDCTGCDMCAHVCP 761



 Score = 35.5 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 9/19 (47%)

Query: 100 MIKCIYCGLCQEACPVDAI 118
              CI CG C   CP  AI
Sbjct: 691 PDLCIQCGKCSLVCPHAAI 709


>gi|320353242|ref|YP_004194581.1| cobyrinic acid ac-diamide synthase [Desulfobulbus propionicus DSM
           2032]
 gi|320121744|gb|ADW17290.1| cobyrinic acid ac-diamide synthase [Desulfobulbus propionicus DSM
           2032]
          Length = 301

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + C  C  C ++C   AIT                +++D I+C  CG+C + CP  AI
Sbjct: 64  NPDLCTGCGTCRSLCRFGAIT--------------EAFEVDPIRCEGCGVCVDFCPEAAI 109

Query: 119 VE 120
             
Sbjct: 110 DF 111


>gi|225389590|ref|ZP_03759314.1| hypothetical protein CLOSTASPAR_03338 [Clostridium asparagiforme
           DSM 15981]
 gi|225044343|gb|EEG54589.1| hypothetical protein CLOSTASPAR_03338 [Clostridium asparagiforme
           DSM 15981]
          Length = 258

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 23/68 (33%), Gaps = 11/68 (16%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
            +     E CI C LC   CPA  I I+                +    CI CG C   C
Sbjct: 5   HQIRINPETCIGCGLCRRDCPAGNIRIKDKKA-----------KVITQDCIMCGHCVAIC 53

Query: 114 PVDAIVEG 121
           P  A+   
Sbjct: 54  PKAAVSMT 61



 Score = 34.7 bits (78), Expect = 4.5,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 14/33 (42%)

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            +   +  I+   CI CGLC+  CP   I    
Sbjct: 1   MKNKHQIRINPETCIGCGLCRRDCPAGNIRIKD 33


>gi|218262922|ref|ZP_03477229.1| hypothetical protein PRABACTJOHN_02909 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223064|gb|EEC95714.1| hypothetical protein PRABACTJOHN_02909 [Parabacteroides johnsonii
           DSM 18315]
          Length = 315

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 30/97 (30%), Gaps = 16/97 (16%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P  +         +            CI C  C   CP +AIT+E+              
Sbjct: 193 PKSRRIFVSCVNKDKGGVAKKACANACIGCGKCAKECPFEAITVENN-----------VA 241

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
            ID  KC  C  C   CP  AI      E     R+E
Sbjct: 242 YIDYTKCRLCRKCVAVCPTGAI-----HELNFPPRKE 273



 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 8/81 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------DMIKCIYCGLCQ 110
            E++C +C  C   CP   I +            +                 CI CG C 
Sbjct: 167 DEDKCTSCGACVKACPKNIIELRKKGPKSRRIFVSCVNKDKGGVAKKACANACIGCGKCA 226

Query: 111 EACPVDAIVEGPNFEFATETR 131
           + CP +AI    N  +   T+
Sbjct: 227 KECPFEAITVENNVAYIDYTK 247



 Score = 35.5 bits (80), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 9/60 (15%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+    C A C   AI I                ++D  KC  CG C +ACP + I    
Sbjct: 140 CLGYGDCVAACNFDAIHINLETGLP---------EVDEDKCTSCGACVKACPKNIIELRK 190


>gi|254487985|ref|ZP_05101190.1| formate dehydrogenase, alpha subunit [Roseobacter sp. GAI101]
 gi|214044854|gb|EEB85492.1| formate dehydrogenase, alpha subunit [Roseobacter sp. GAI101]
          Length = 922

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 6/81 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID----MIKCIYCGLCQEACP 114
             + CI C LC   C  +    +       G      +D+        C+ CG C +ACP
Sbjct: 147 NLDACIQCNLCVRACR-EVQVNDVIGMSGRGHDSYPTFDMADPMGASSCVACGECVQACP 205

Query: 115 VDAIVEGPNFEFA-TETRQEL 134
             A++E    + A    R + 
Sbjct: 206 TGALMEATVVDDAQVGDRADF 226


>gi|254427723|ref|ZP_05041430.1| electron transport complex, RnfABCDGE type, B subunit subfamily
           [Alcanivorax sp. DG881]
 gi|196193892|gb|EDX88851.1| electron transport complex, RnfABCDGE type, B subunit subfamily
           [Alcanivorax sp. DG881]
          Length = 194

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 10/64 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E+ CI C  C   CP  AI   +           + + + + +C  C LC E CPVD
Sbjct: 110 YIREDECIGCTKCIQACPVDAIVGAAK----------LMHTVIVDECTGCDLCVEPCPVD 159

Query: 117 AIVE 120
            I  
Sbjct: 160 CIDM 163


>gi|188584735|ref|YP_001916280.1| Fe-S cluster domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179349422|gb|ACB83692.1| Fe-S cluster domain protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 460

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 30/64 (46%), Gaps = 12/64 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA-IV 119
           E CI C  C   CP QAI I+ G           R +I   +CI CG C + CP +A I 
Sbjct: 13  ESCIGCVHCLKFCPTQAIRIKGG-----------RAEILKERCIDCGGCIQICPNNAKIA 61

Query: 120 EGPN 123
           E  N
Sbjct: 62  ESDN 65


>gi|116235070|dbj|BAF34984.1| trichloroethene reductive dehalogenase [uncultured Dehalococcoides
           sp.]
          Length = 554

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 3/60 (5%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID---MIKCIYCGLCQEACPVD 116
            E C  C +C   CP QAI+ E              Y+       KCI C  C+  CP  
Sbjct: 434 REFCKTCGICAEHCPTQAISHEGPRYDSPYWDNVSGYEGWHLDYHKCINCTNCETFCPFF 493



 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 103 CIYCGLCQEACPVDAI-VEGPNFE 125
           C  CG+C E CP  AI  EGP ++
Sbjct: 437 CKTCGICAEHCPTQAISHEGPRYD 460


>gi|116235056|dbj|BAF34977.1| trichloroethene reductive dehalogenase [uncultured Dehalococcoides
           sp.]
 gi|116235060|dbj|BAF34979.1| trichloroethene reductive dehalogenase [uncultured Dehalococcoides
           sp.]
 gi|116235068|dbj|BAF34983.1| trichloroethene reductive dehalogenase [uncultured Dehalococcoides
           sp.]
          Length = 554

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 3/60 (5%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID---MIKCIYCGLCQEACPVD 116
            E C  C +C   CP QAI+ E              Y+       KCI C  C+  CP  
Sbjct: 434 REFCKTCGICAEHCPNQAISHEGPRYDSPYWDNVSGYEGWHLDYHKCINCTNCETFCPFF 493


>gi|116695639|ref|YP_841215.1| tungsten-containing formate dehydrogenase alpha subunit [Ralstonia
           eutropha H16]
 gi|113530138|emb|CAJ96485.1| Tungsten-containing formate dehydrogenase alpha subunit [Ralstonia
           eutropha H16]
          Length = 938

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 5/78 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM----IKCIYCGLCQEACP 114
             + CI C  C   C  +    +       G    + +D+D       C+ CG C +ACP
Sbjct: 154 NLDACIQCTRCLRACRDE-QVNDVIGLALRGDEARIVFDMDDPMGVSTCVACGECVQACP 212

Query: 115 VDAIVEGPNFEFATETRQ 132
             A++   +   A   +Q
Sbjct: 213 TGALMPARDAALAVPDKQ 230


>gi|147918956|ref|YP_687318.1| formate dehydrogenase, beta subunit [uncultured methanogenic
           archaeon RC-I]
 gi|110622714|emb|CAJ37992.1| formate dehydrogenase, beta subunit [uncultured methanogenic
           archaeon RC-I]
          Length = 414

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 25/75 (33%), Gaps = 9/75 (12%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIE---------SGPRCHDGTRRTVRYDID 99
           G   L+       RCI C  C   CP    T            G    +     +R+   
Sbjct: 281 GTERLQAIMKETSRCIRCYACIENCPICYCTECSTKKPYLVTPGEVPPNFMFHMIRFMHV 340

Query: 100 MIKCIYCGLCQEACP 114
              CI CG C+E CP
Sbjct: 341 SDSCINCGQCEELCP 355


>gi|78059775|ref|YP_366350.1| dihydropyrimidine dehydrogenase [Burkholderia sp. 383]
 gi|77964325|gb|ABB05706.1| dihydroorotate oxidase B, catalytic subunit / dihydrouracil
           dehydrogenase (NAD+) / dihydropyrimidine dehydrogenase
           (NADP+) [Burkholderia sp. 383]
          Length = 438

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 6/63 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117
            ++RCI C LC   C     + ++     DG R    +++   +C+ C LC   CPV   
Sbjct: 341 DQDRCIQCGLCHIACED--TSHQAITATKDGVR---HFEVVDSECVGCNLCMHVCPVEQC 395

Query: 118 IVE 120
           I  
Sbjct: 396 ITM 398


>gi|27367730|ref|NP_763257.1| formate dehydrogenase subunit alpha [Vibrio vulnificus CMCP6]
 gi|27359302|gb|AAO08247.1| formate dehydrogenase, alpha subunit [Vibrio vulnificus CMCP6]
          Length = 1399

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 11/71 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM-----------IKCIYCG 107
              RCI+C  C   C  Q++         +  R  VR D               +C+ CG
Sbjct: 631 DANRCISCGQCIQACREQSVQGVLSFMNLEKGRPVVRPDCRPNFGGQGVRMGDSRCVQCG 690

Query: 108 LCQEACPVDAI 118
            C +ACPV A+
Sbjct: 691 ACVQACPVGAM 701



 Score = 38.2 bits (87), Expect = 0.41,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 4/69 (5%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           +    P  R     +    G+ RC+ C  C   CP  A+T          T       I 
Sbjct: 663 RPVVRPDCRPNFGGQGVRMGDSRCVQCGACVQACPVGAMTDARDRSQGRETPLKKVDTI- 721

Query: 100 MIKCIYCGL 108
              C YCG+
Sbjct: 722 ---CTYCGV 727


>gi|242027230|gb|ACS75682.1| hydrogenase I [Clostridium sp. IBUN 158B]
          Length = 287

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 3/78 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPV 115
              +C+ C  C A C  +  T           R+    +    D   C+ CG C  ACPV
Sbjct: 59  DRSKCVLCGRCVAACKEKTGTGNIEIAGKGPDRKVQAIEGKCFDETNCLLCGQCVAACPV 118

Query: 116 DAIVEGPNFEFATETRQE 133
            A+ E P+ +   E  ++
Sbjct: 119 AALNEKPHIDRVKEALED 136


>gi|257063524|ref|YP_003143196.1| NADH:ubiquinone oxidoreductase chain I-like protein [Slackia
           heliotrinireducens DSM 20476]
 gi|256791177|gb|ACV21847.1| NADH:ubiquinone oxidoreductase chain I-like protein [Slackia
           heliotrinireducens DSM 20476]
          Length = 447

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 7/72 (9%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G +    +   +  C AC +C  +CP  +I    G            Y+     C+ CG+
Sbjct: 304 GHYLWPEHIVDKSICRACGVCMQMCPTGSIHHTLGDGE-------FVYEFSPGTCVNCGV 356

Query: 109 CQEACPVDAIVE 120
           C  +CP +AI  
Sbjct: 357 CVASCPKEAIKH 368



 Score = 33.5 bits (75), Expect = 8.8,   Method: Composition-based stats.
 Identities = 9/42 (21%), Positives = 14/42 (33%)

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
                    G      + +D   C  CG+C + CP  +I   
Sbjct: 295 WRHSESVQGGHYLWPEHIVDKSICRACGVCMQMCPTGSIHHT 336


>gi|167761075|ref|ZP_02433202.1| hypothetical protein CLOSCI_03473 [Clostridium scindens ATCC 35704]
 gi|167661309|gb|EDS05439.1| hypothetical protein CLOSCI_03473 [Clostridium scindens ATCC 35704]
          Length = 248

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 41/114 (35%), Gaps = 6/114 (5%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E  +   ++      R  P   E+CI C LC   C +      S        + +  YD 
Sbjct: 101 EIKALCKQYGAMDGSRFAPIEGEKCIMCGLCARACASLGTGAISTVMRGTSKKISTPYDE 160

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEI 152
               CI C  C + CP  AI      +FA + ++   + +E  L       + I
Sbjct: 161 PSSACIGCLSCAKICPTRAI------DFAEDEKKRSIWGREFELIRCKECGAPI 208


>gi|167585883|ref|ZP_02378271.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia
           ubonensis Bu]
          Length = 158

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 26/81 (32%), Gaps = 10/81 (12%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
             +P    E A       E  CI C LC   CP  AI                 + +   
Sbjct: 66  PLNPVNGDERARPVAVIDENLCIGCTLCMQACPVDAIAGAPKQ----------MHTVIAS 115

Query: 102 KCIYCGLCQEACPVDAIVEGP 122
            C  C LC   CPVD I   P
Sbjct: 116 LCTGCDLCVPPCPVDCIAMVP 136


>gi|73670448|ref|YP_306463.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Methanosarcina barkeri str. Fusaro]
 gi|72397610|gb|AAZ71883.1| indolepyruvate ferredoxin oxidoreductase, subunit alpha
           [Methanosarcina barkeri str. Fusaro]
          Length = 635

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 12/68 (17%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           + Y    E C  C  C       A+ ++                +    C  CGLC + C
Sbjct: 576 KHYEINPEACTGCGFCIKELGCPALNLDGDKP------------VIQDNCSGCGLCAQIC 623

Query: 114 PVDAIVEG 121
           P +AI  G
Sbjct: 624 PSEAICIG 631



 Score = 34.3 bits (77), Expect = 5.6,   Method: Composition-based stats.
 Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 2/26 (7%)

Query: 91  RRTVRYDIDMIKCIYCGLCQEA--CP 114
           +    Y+I+   C  CG C +   CP
Sbjct: 573 KPDKHYEINPEACTGCGFCIKELGCP 598


>gi|332704369|ref|ZP_08424457.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332554518|gb|EGJ51562.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 582

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 24/67 (35%), Gaps = 13/67 (19%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                  E+CI C  C+  CP QAI  +     H              +CI C +C   C
Sbjct: 245 VWRRRVSEKCIECGKCQRACPMQAIADDPHATRH-------------GECILCRVCAGVC 291

Query: 114 PVDAIVE 120
           P  AI  
Sbjct: 292 PTGAIDF 298



 Score = 41.2 bits (95), Expect = 0.046,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 11/82 (13%)

Query: 41  GSTSPRFRGEHALRRYPNGEERC------IACKLCEAICPAQAITIESGPRCHDGTRRTV 94
                + R    L       E C        C +C+ +CP  A+ ++  P          
Sbjct: 418 RPLPLQERVWAKLGTAEVNRETCLAWKDKKKCLVCDEVCPYGAVELKPEPGNPVY----- 472

Query: 95  RYDIDMIKCIYCGLCQEACPVD 116
              +D  +C  CG C+  CPV 
Sbjct: 473 VPHVDEKRCAGCGYCEHFCPVR 494



 Score = 40.5 bits (93), Expect = 0.077,   Method: Composition-based stats.
 Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 7/55 (12%)

Query: 68  LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            C  +CPA A       R     R +        KCI CG CQ ACP+ AI + P
Sbjct: 226 WCRYVCPAGASLALLSRRPVWRRRVS-------EKCIECGKCQRACPMQAIADDP 273



 Score = 35.5 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 27/87 (31%), Gaps = 7/87 (8%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            RC+ C  C   CP   I          G        +      +C  C +ACP  AI  
Sbjct: 360 SRCMRCGQCALACPTNIIQPVWFSSGVLGVFSPGLTPVRGFCDPHCHQCGKACPTLAIRP 419

Query: 121 GPNFE-------FATETRQELYYDKER 140
            P  E        A   R+     K++
Sbjct: 420 LPLQERVWAKLGTAEVNRETCLAWKDK 446



 Score = 34.3 bits (77), Expect = 5.5,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIV 119
           D  + +C+ CG C  ACP + I 
Sbjct: 356 DEFLSRCMRCGQCALACPTNIIQ 378


>gi|325269239|ref|ZP_08135858.1| pyruvate-ferredoxin oxidoreductase [Prevotella multiformis DSM
           16608]
 gi|324988468|gb|EGC20432.1| pyruvate-ferredoxin oxidoreductase [Prevotella multiformis DSM
           16608]
          Length = 1191

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 39/123 (31%), Gaps = 21/123 (17%)

Query: 12  FLKEFVGAFFLCLRYFFK-----AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIAC 66
           F+KE V           K        T++  +  G+ +   RG  A        E CI C
Sbjct: 637 FVKELVRPMNAQAGDLLKVSDFVKHNTVDGTWSVGTAAYDKRGVAAFVPTW-DAENCIQC 695

Query: 67  KLCEAICPAQAITI---ESGPRCHDGTR------------RTVRYDIDMIKCIYCGLCQE 111
             C  +CP   I     +   +                     R ++ ++ C  CG C +
Sbjct: 696 NKCSFVCPHACIRPFVLDEQEKAGFNEPTLDVLAPKQLKGMQFRIEVSVLDCTGCGNCAD 755

Query: 112 ACP 114
            CP
Sbjct: 756 VCP 758


>gi|294495156|ref|YP_003541649.1| nitrite and sulphite reductase 4Fe-4S region [Methanohalophilus
           mahii DSM 5219]
 gi|292666155|gb|ADE36004.1| nitrite and sulphite reductase 4Fe-4S region [Methanohalophilus
           mahii DSM 5219]
          Length = 274

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/92 (33%), Positives = 38/92 (41%), Gaps = 12/92 (13%)

Query: 28  FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH 87
           FK   T   P           G   + R    E  C+AC LCE IC A AI+I++G    
Sbjct: 124 FKIAIT-GCPASCMKPQENDFGIMGVVRPEWIENNCVACGLCEKICKADAISIDNGQ--- 179

Query: 88  DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
                    DID   CI+CG C  +C   AI 
Sbjct: 180 --------LDIDSNSCIFCGECISSCKKSAIN 203


>gi|322419374|ref|YP_004198597.1| NADH dehydrogenase (quinone) [Geobacter sp. M18]
 gi|320125761|gb|ADW13321.1| NADH dehydrogenase (quinone) [Geobacter sp. M18]
          Length = 489

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 10/67 (14%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           AL  Y     +C+ C  C  +CP   I+ ++             + ID   CI CG C E
Sbjct: 430 ALLEYFVVAAKCVGCTACARVCPVSCISGKAKE----------VHLIDQNSCIKCGACIE 479

Query: 112 ACPVDAI 118
            C   AI
Sbjct: 480 RCKFGAI 486



 Score = 40.1 bits (92), Expect = 0.10,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 14/47 (29%)

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                A  I             + Y +   KC+ C  C   CPV  I
Sbjct: 410 FADEYAAHINEKKCPAGVCTALLEYFVVAAKCVGCTACARVCPVSCI 456


>gi|284030067|ref|YP_003379998.1| formate dehydrogenase subunit alpha [Kribbella flavida DSM 17836]
 gi|283809360|gb|ADB31199.1| formate dehydrogenase, alpha subunit [Kribbella flavida DSM 17836]
          Length = 971

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 27/80 (33%), Gaps = 5/80 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114
             + CI C  C   C       +   R   G    + +D    +    C+ CG C  ACP
Sbjct: 157 NHDSCILCDRCVRACD-DVQGNDVIGRSGKGYSTRIAFDLDDPMGQSSCVTCGECVSACP 215

Query: 115 VDAIVEGPNFEFATETRQEL 134
             A+          + R+ L
Sbjct: 216 TGALTNKAINSIPIQPRETL 235


>gi|227824895|ref|ZP_03989727.1| ferredoxin [Acidaminococcus sp. D21]
 gi|226905394|gb|EEH91312.1| ferredoxin [Acidaminococcus sp. D21]
          Length = 429

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 25/67 (37%), Gaps = 11/67 (16%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            L      E+RC  C LC   C  QAI +  G              I   +CI CG C  
Sbjct: 5   YLNSVRVEEDRCTGCLLCVKKCLVQAIRVRDGKAV-----------IISDRCIDCGECIR 53

Query: 112 ACPVDAI 118
            CP  AI
Sbjct: 54  CCPTRAI 60


>gi|298529637|ref|ZP_07017040.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511073|gb|EFI34976.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 652

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 7/64 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              RCI C  C  +CP  A+            R   + ++    C  CG+C   CP  AI
Sbjct: 580 DINRCIGCGKCIQVCPFGAVK-------EVDFRGQPKAEVIETVCQGCGICTATCPQGAI 632

Query: 119 VEGP 122
               
Sbjct: 633 QLSH 636



 Score = 40.9 bits (94), Expect = 0.057,   Method: Composition-based stats.
 Identities = 24/106 (22%), Positives = 31/106 (29%), Gaps = 13/106 (12%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR--------CHDG 89
            E G     F  +   +      + C  C LC   CPA+  T                  
Sbjct: 217 EEVGGYVGNFEVKIKKKPAYVNWDLCTGCGLCMEKCPAKKSTDYFNENLGKTTAINIPFP 276

Query: 90  TRRTVRYDIDMIKCI-----YCGLCQEACPVDAIVEGPNFEFATET 130
                +  ID   C       C +C + CP  AI      EF TE 
Sbjct: 277 QAIPKKAVIDPDFCRQFTKGKCSVCAKLCPTKAIDFEQQEEFVTEQ 322


>gi|223984137|ref|ZP_03634289.1| hypothetical protein HOLDEFILI_01581 [Holdemania filiformis DSM
           12042]
 gi|223963931|gb|EEF68291.1| hypothetical protein HOLDEFILI_01581 [Holdemania filiformis DSM
           12042]
          Length = 446

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/95 (17%), Positives = 29/95 (30%), Gaps = 5/95 (5%)

Query: 20  FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79
             +          T +        +P       L+  P  +  C+ C  C   CPA    
Sbjct: 335 LLIAGGPMMGKTITTDQ----FVITPYSNALTVLKNKPVNQVACLRCGRCSDHCPAGLQP 390

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           +             +   + ++ CI CG+C   CP
Sbjct: 391 VRINQAEKSKNVAMLE-KLSIMDCIECGMCSFVCP 424


>gi|209880614|ref|XP_002141746.1| RNase L inhibitor-like protein [Cryptosporidium muris RN66]
 gi|209557352|gb|EEA07397.1| RNase L inhibitor-like protein, putative [Cryptosporidium muris
           RN66]
          Length = 618

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 1/71 (1%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            LR      + C   K C   C      + +G  C +    +    I    CI CG+C +
Sbjct: 18  RLRIAIVNADMCKP-KNCSQECKTFCPVVRTGKLCVEVDSTSKVATISESLCIGCGICVK 76

Query: 112 ACPVDAIVEGP 122
            CP DAI    
Sbjct: 77  KCPYDAITIIN 87


>gi|206896136|ref|YP_002247516.1| dye-linked L-proline dehydrogenase gamma2 subunit
           [Coprothermobacter proteolyticus DSM 5265]
 gi|206738753|gb|ACI17831.1| dye-linked L-proline dehydrogenase gamma2 subunit
           [Coprothermobacter proteolyticus DSM 5265]
          Length = 161

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 27/82 (32%), Gaps = 12/82 (14%)

Query: 42  STSPRFRGEHALRRYPNGEERC---IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
                F  E  L +       C   I C  C   CP  AI++E                I
Sbjct: 12  DVMGNFPSEERLLKGFVAVHECYQDIPCNPCVESCPVHAISMEKLTSPPV---------I 62

Query: 99  DMIKCIYCGLCQEACPVDAIVE 120
           D  KC  CG C  +CP  AI  
Sbjct: 63  DFDKCTGCGNCVASCPGLAIFL 84


>gi|114567942|ref|YP_755096.1| (Fe) hydrogenase large subunit HymC [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
 gi|114338877|gb|ABI69725.1| (Fe) hydrogenase, large subunit HymC, putative [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
          Length = 563

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              +C  C  C  +C     T+ +    +   +      +   KC+ CG C   CPV AI
Sbjct: 138 DPSKCTLCLRCVEMCN-DVQTVGALEIKNGVPQTIDGKALIETKCVMCGQCALVCPVGAI 196

Query: 119 VEGPNFE 125
           +E    E
Sbjct: 197 IENEEVE 203


>gi|50344697|dbj|BAD29951.1| hydrogenase [Clostridium paraputrificum]
          Length = 582

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 3/78 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPV 115
              +CI C  C A C  +  T        +G R     +    D   C+ CG C  ACPV
Sbjct: 143 DRSKCILCGRCAAACTEKTGTSSIKLVNVNGKRIVTPEEQKCFDETNCLLCGQCVAACPV 202

Query: 116 DAIVEGPNFEFATETRQE 133
            A+ E  + +   E  ++
Sbjct: 203 GALSEKTHIDRVKEALED 220



 Score = 35.1 bits (79), Expect = 3.5,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 29/81 (35%), Gaps = 6/81 (7%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI-----CPAQAIT-IESGPRCHDGTRR 92
           EK     + R    L ++      C   + CE +       A+A T      +      R
Sbjct: 77  EKVQERVKSRVSTILNKHEFKCGPCPRRENCELLKLVIKTKAKATTPFVVENKEEYVDIR 136

Query: 93  TVRYDIDMIKCIYCGLCQEAC 113
           +    ID  KCI CG C  AC
Sbjct: 137 SKSITIDRSKCILCGRCAAAC 157


>gi|84489156|ref|YP_447388.1| hypothetical protein Msp_0335 [Methanosphaera stadtmanae DSM 3091]
 gi|84372475|gb|ABC56745.1| PorD [Methanosphaera stadtmanae DSM 3091]
          Length = 80

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 14/65 (21%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +++CI+C LC   CP   I++E              ++ D   C  CG+C E CPVDAI
Sbjct: 30  DKDKCISCGLCYLFCPDGCISVE--------------FNHDYDYCKGCGICAEECPVDAI 75

Query: 119 VEGPN 123
                
Sbjct: 76  KMVRE 80


>gi|82523739|emb|CAI78739.1| predicted NADH:ubiquinone oxidoreductase, subunit RfnB [uncultured
           gamma proteobacterium]
          Length = 209

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 10/60 (16%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             CI C  C   CP  AI   +             + +   +C  C LC E CPVD I  
Sbjct: 120 NECIGCTKCIQACPVDAILGAAKQ----------MHTVIASECTGCDLCVEPCPVDCIDM 169



 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/36 (38%), Positives = 17/36 (47%)

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                + TR      I   +CI C  C +ACPVDAI
Sbjct: 102 DEEHGEETRGPAVAFIRENECIGCTKCIQACPVDAI 137


>gi|323703139|ref|ZP_08114793.1| sulfite reductase, subunit C [Desulfotomaculum nigrificans DSM 574]
 gi|323531916|gb|EGB21801.1| sulfite reductase, subunit C [Desulfotomaculum nigrificans DSM 574]
          Length = 321

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 11/89 (12%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +      +  G            +C+ C+LC   CPA A+T        D       
Sbjct: 149 CPNDCVKAHTQDIGIIGQIEPVYEAAKCVGCRLCVKKCPAGALTWTGKEIVRD------- 201

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
                 +CI CG C ++CP  A+  G  +
Sbjct: 202 ----ADRCIGCGDCADSCPKSALSRGEQY 226



 Score = 33.5 bits (75), Expect = 9.9,   Method: Composition-based stats.
 Identities = 9/55 (16%), Positives = 15/55 (27%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
              +                  G    +    +  KC+ C LC + CP  A+   
Sbjct: 140 YHVKIAITGCPNDCVKAHTQDIGIIGQIEPVYEAAKCVGCRLCVKKCPAGALTWT 194


>gi|323144839|ref|ZP_08079408.1| electron transport complex, RnfABCDGE type, C subunit
           [Succinatimonas hippei YIT 12066]
 gi|322415364|gb|EFY06129.1| electron transport complex, RnfABCDGE type, C subunit
           [Succinatimonas hippei YIT 12066]
          Length = 633

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 39/112 (34%), Gaps = 11/112 (9%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             CI C  C  +CP++ +          G  +    +  +  C  CG C   CP   I  
Sbjct: 378 RNCIRCGRCARVCPSRLVPYRMYALSKAGDHKKTL-NCGIKDCTECGCCAYVCP-SKIPL 435

Query: 121 GPNF--EFA-------TETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
              F  E A        + R +   ++ +L +   + E++I       +  R
Sbjct: 436 TSQFRKEKAIIRILDDKQRRTDRAKERMKLHDERLKEEAKIREAKRQAALAR 487


>gi|315923839|ref|ZP_07920068.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622872|gb|EFV02824.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 206

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 12/56 (21%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           CI C  C  +CP QAI                 Y I    C++CGLC E CPVDAI
Sbjct: 157 CIGCDTCAGLCPQQAID------------AGTPYAIRQANCLHCGLCFENCPVDAI 200


>gi|304440515|ref|ZP_07400402.1| pyruvate:ferredoxin oxidoreductase [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304370993|gb|EFM24612.1| pyruvate:ferredoxin oxidoreductase [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 1180

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 28/96 (29%), Gaps = 19/96 (19%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG      +    E CI C  C  +CP                A       +        
Sbjct: 676 RGIAVDIPHWK-IENCIQCNQCSFVCPHAVIRPFLLDEEEKKNAPETFETKKGIGKGASD 734

Query: 94  VRY--DIDMIKCIYCGLCQEACP--VDAIVEGPNFE 125
             Y   I  + C  CG C + CP    A+V  P  E
Sbjct: 735 FEYRIQISPLDCTGCGNCAQVCPAKEKALVMIPFEE 770


>gi|294636370|ref|ZP_06714759.1| electron transport complex protein RnfC [Edwardsiella tarda ATCC
           23685]
 gi|291090358|gb|EFE22919.1| electron transport complex protein RnfC [Edwardsiella tarda ATCC
           23685]
          Length = 576

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           P  E+ CI C  C  +CP + +  +       G          + +CI CG C   CP
Sbjct: 372 PQEEQPCIRCSSCADVCPVRLLPQQLY-WYSRGQEHDKARSHHLQECIECGACAYVCP 428


>gi|254884334|ref|ZP_05257044.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
 gi|254837127|gb|EET17436.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA]
          Length = 394

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 6/56 (10%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
            E C  C  C   C   AI +             +   I+  KC+ CGLC   CPV
Sbjct: 7   FESCTGCTACMNSCSHNAIVMAEDAEG------FIFPHINGNKCVECGLCMRVCPV 56


>gi|188588322|ref|YP_001919488.1| hydrogenase-1 [Clostridium botulinum E3 str. Alaska E43]
 gi|188498603|gb|ACD51739.1| hydrogenase-1 [Clostridium botulinum E3 str. Alaska E43]
          Length = 576

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPV 115
              +C+ C  CEA C  +  T        +G ++    D    D   C+ CG C  ACPV
Sbjct: 144 DRSKCVLCGRCEAACSEKTATNSIKIIDDNGDKKVATIDGKCFDDTNCLLCGQCIAACPV 203

Query: 116 DAIVEGPNFE 125
           DA+ E  + E
Sbjct: 204 DALSEKSHTE 213



 Score = 35.5 bits (80), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 6/100 (6%)

Query: 20  FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI---CPAQ 76
             L      + K  I    EK   + + R    L ++      C   + CE +      +
Sbjct: 59  LALSCETLVQDKMVIRTDSEKVQEAIKLRVAEMLDKHEFKCGPCKRREDCEFLKLVIKTK 118

Query: 77  AITIES---GPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           A   +      +      R+    ID  KC+ CG C+ AC
Sbjct: 119 ARANKPFIVKDKSEYVDDRSKSIVIDRSKCVLCGRCEAAC 158


>gi|14521449|ref|NP_126925.1| putative ATPase RIL [Pyrococcus abyssi GE5]
 gi|5458668|emb|CAB50155.1| ABC transporter ATP-binding protein [Pyrococcus abyssi GE5]
          Length = 593

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 23/78 (29%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +R      ++C   K    +C         G           +  I    C  CG+C   
Sbjct: 5   MRIAVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYKPIIQEASCTGCGICVHK 64

Query: 113 CPVDAIVEGPNFEFATET 130
           CP +AI      E   E 
Sbjct: 65  CPFNAISIVNLPEQLDED 82


>gi|331090680|ref|ZP_08339529.1| hypothetical protein HMPREF9477_00172 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330400094|gb|EGG79745.1| hypothetical protein HMPREF9477_00172 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 250

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 30/97 (30%), Gaps = 13/97 (13%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
            F + +     PF K      +R    +   P  +  C  C  C   CPA AI++    +
Sbjct: 144 QFIRERIENPKPF-KVPGKKPYRAYGKIPLKPQIKRTCNHCGKCAKECPAGAISMGEYIK 202

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                            CI C  C   CP  A    P
Sbjct: 203 LDK------------NLCISCMRCVAVCPRHARKLSP 227


>gi|325959018|ref|YP_004290484.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
 gi|325330450|gb|ADZ09512.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
          Length = 252

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 3/64 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++ CI C  C  +C   A+++E   R      +T +  ID   C+ CG+C+E CPV+AI
Sbjct: 160 DKDSCIGCGACANVCGENAVSLE---RRLGSVFKTKKLAIDEDICVACGMCEENCPVEAI 216

Query: 119 VEGP 122
               
Sbjct: 217 KLEN 220



 Score = 41.6 bits (96), Expect = 0.037,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 31/91 (34%), Gaps = 14/91 (15%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQA--------------ITIESGPRCHDG 89
                 E  L +     + C+ C++C   CP  A                     +    
Sbjct: 61  PVNAIDEAKLTKPAKILDNCVKCEICSQTCPVNAIKVIESKSDLEEDVTYKLKTKKVPHR 120

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           T R  + D+D +KC  CG C + CP  AI  
Sbjct: 121 TLRMEKIDVDPVKCTSCGNCVKFCPTGAIKL 151



 Score = 37.0 bits (84), Expect = 0.87,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 11/61 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ C+AC +CE  CP +AI +E+G                  KCI C +C + CPV A+
Sbjct: 197 DEDICVACGMCEENCPVEAIKLENGKIV-----------YSKNKCITCEVCSKKCPVAAL 245

Query: 119 V 119
            
Sbjct: 246 N 246



 Score = 35.1 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 10/58 (17%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             C+ C LC   CP  AI             +  +    +  C+ C +C + CPV+AI
Sbjct: 48  PECVRCNLCAQECPVNAIDE----------AKLTKPAKILDNCVKCEICSQTCPVNAI 95


>gi|301064797|ref|ZP_07205171.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300441091|gb|EFK05482.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 254

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 10/64 (15%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             +  Y    E+C AC +C   CP  AI             + + + ID  KCI CG C 
Sbjct: 170 EEVVSYYIDPEKCKACMICARSCPVDAIVG----------GKNLIHVIDQEKCIKCGTCF 219

Query: 111 EACP 114
           EACP
Sbjct: 220 EACP 223



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/28 (57%), Positives = 18/28 (64%)

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           Y ID  KC  C +C  +CPVDAIV G N
Sbjct: 175 YYIDPEKCKACMICARSCPVDAIVGGKN 202


>gi|291336384|gb|ADD95941.1| hypothetical protein [uncultured organism MedDCM-OCT-S04-C1]
          Length = 110

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 23/68 (33%), Gaps = 2/68 (2%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--TVRYDIDMIKCIYCGLCQEACP 114
              E+ CI C  C  +C   AI +                +  I    C  C LC  ACP
Sbjct: 42  WVSEKLCIGCDQCTIVCDDDAIELYFKDMVSPLIEVPSNRKAKIIRDMCTGCRLCVLACP 101

Query: 115 VDAIVEGP 122
            DAI    
Sbjct: 102 TDAITMID 109


>gi|295096018|emb|CBK85108.1| electron transport complex, RnfABCDGE type, B subunit [Enterobacter
           cloacae subsp. cloacae NCTC 9394]
          Length = 192

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 23/76 (30%), Gaps = 10/76 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   +             + +    C  C LC   CP   I
Sbjct: 113 DEANCIGCTKCIQACPVDAIVGAT----------RAMHTVVADLCTGCNLCVAPCPTQCI 162

Query: 119 VEGPNFEFATETRQEL 134
              P        + +L
Sbjct: 163 ELRPVETTTESWKWDL 178



 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C  C +ACPVDAI
Sbjct: 112 IDEANCIGCTKCIQACPVDAI 132


>gi|219854503|ref|YP_002471625.1| hypothetical protein CKR_1160 [Clostridium kluyveri NBRC 12016]
 gi|219568227|dbj|BAH06211.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 458

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 20/52 (38%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           CI C  C   CP             +   R  + D +++ C+ CG C   CP
Sbjct: 371 CIRCGRCFNACPMSLNPSMLSILGQNNLYREAKEDYNLLDCVECGSCVYVCP 422


>gi|242280740|ref|YP_002992869.1| ferredoxin-dependent glutamate synthase [Desulfovibrio salexigens
           DSM 2638]
 gi|242123634|gb|ACS81330.1| ferredoxin-dependent glutamate synthase [Desulfovibrio salexigens
           DSM 2638]
          Length = 544

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 29/94 (30%), Gaps = 16/94 (17%)

Query: 41  GSTSPRFRGEHALRR-YPNGEERCIACKLCEAICPAQAIT---------------IESGP 84
              +P   G   L       ++ C  C  C ++CP  AI                ++   
Sbjct: 5   RPITPSTLGVKDLNWQIEWDKDLCTQCGRCTSVCPVNAIELGVFRKREIITPAGLMKKAE 64

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             H       +       CI C +C   CP +AI
Sbjct: 65  NKHTVFYGIRQKTDPAYACIGCSMCNMVCPNNAI 98



 Score = 38.5 bits (88), Expect = 0.32,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 9/54 (16%)

Query: 92  RTVRYDIDMIK--CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLN 143
           + + + I+  K  C  CG C   CPV+AI  G         R+        L+ 
Sbjct: 15  KDLNWQIEWDKDLCTQCGRCTSVCPVNAIELG-----VFRKRE--IITPAGLMK 61


>gi|167752245|ref|ZP_02424372.1| hypothetical protein ALIPUT_00487 [Alistipes putredinis DSM 17216]
 gi|167660486|gb|EDS04616.1| hypothetical protein ALIPUT_00487 [Alistipes putredinis DSM 17216]
          Length = 596

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 10/66 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L  +    + C  C LC  +CP  AI+                Y ID  +CI CG C E 
Sbjct: 538 LMSFVIDPKVCKGCSLCARMCPPGAISGIPKQP----------YAIDQARCIKCGTCLEK 587

Query: 113 CPVDAI 118
           C   AI
Sbjct: 588 CKFGAI 593



 Score = 34.3 bits (77), Expect = 5.8,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 16/53 (30%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           E         +          R  + + ID   C  C LC   CP  AI   P
Sbjct: 515 ENFWDEYVAHVRDHHCTAHRCRDLMSFVIDPKVCKGCSLCARMCPPGAISGIP 567


>gi|153953889|ref|YP_001394654.1| hypothetical protein CKL_1264 [Clostridium kluyveri DSM 555]
 gi|146346770|gb|EDK33306.1| RnfC [Clostridium kluyveri DSM 555]
          Length = 452

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 20/52 (38%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           CI C  C   CP             +   R  + D +++ C+ CG C   CP
Sbjct: 365 CIRCGRCFNACPMSLNPSMLSILGQNNLYREAKEDYNLLDCVECGSCVYVCP 416


>gi|78222168|ref|YP_383915.1| indolepyruvate ferredoxin oxidoreductase subunit alpha [Geobacter
           metallireducens GS-15]
 gi|78193423|gb|ABB31190.1| Indolepyruvate ferredoxin oxidoreductase, alpha subunit, putative
           [Geobacter metallireducens GS-15]
          Length = 601

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 9/82 (10%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           +       F+G+   RR     + C  C+ C       A+  +   +         R  I
Sbjct: 526 QPCVVDRTFKGDRPPRRKVAISDACNGCRYCTTQFECPALVYDEEEK---------RVAI 576

Query: 99  DMIKCIYCGLCQEACPVDAIVE 120
           D + C  CG+C + CP  AI E
Sbjct: 577 DTLICTDCGVCIDVCPRLAIEE 598


>gi|89897237|ref|YP_520724.1| hypothetical protein DSY4491 [Desulfitobacterium hafniense Y51]
 gi|219666893|ref|YP_002457328.1| hypothetical protein Dhaf_0829 [Desulfitobacterium hafniense DCB-2]
 gi|89336685|dbj|BAE86280.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219537153|gb|ACL18892.1| protein of unknown function DUF362 [Desulfitobacterium hafniense
           DCB-2]
          Length = 382

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++C+ C  C   CP QA+ +    R            ID+  CI C  CQE CP  A+
Sbjct: 320 NHDQCVGCADCVKNCPPQALRLNDQKRPE----------IDLEACIRCFCCQELCPHQAV 369

Query: 119 VEGP 122
               
Sbjct: 370 EISK 373


>gi|119774966|ref|YP_927706.1| electron transport complex protein RnfB [Shewanella amazonensis
           SB2B]
 gi|166225085|sp|A1S6N0|RNFB_SHEAM RecName: Full=Electron transport complex protein rnfB
 gi|119767466|gb|ABM00037.1| iron-sulfur cluster-binding protein [Shewanella amazonensis SB2B]
          Length = 189

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 27/84 (32%), Gaps = 11/84 (13%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E    S     +     Y    + CI C  C   CP  AI               + + +
Sbjct: 91  EPQPLSATTEQQVKKVAYIRE-DECIGCTKCIQACPVDAIVGAGK----------LMHTV 139

Query: 99  DMIKCIYCGLCQEACPVDAIVEGP 122
               C  C LC E CPVD I   P
Sbjct: 140 ITQDCTGCDLCVEPCPVDCIDMLP 163


>gi|320158008|ref|YP_004190386.1| anaerobic dehydrogenase [Vibrio vulnificus MO6-24/O]
 gi|319933320|gb|ADV88183.1| anaerobic dehydrogenase [Vibrio vulnificus MO6-24/O]
          Length = 1399

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 11/71 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM-----------IKCIYCG 107
              RCI+C  C   C  Q++         +  R  VR D               +C+ CG
Sbjct: 631 DANRCISCGQCIQACREQSVQGVLSFMNLEKGRPVVRPDCRPNFGGQGVRMGDSRCVQCG 690

Query: 108 LCQEACPVDAI 118
            C +ACPV A+
Sbjct: 691 ACVQACPVGAM 701



 Score = 38.2 bits (87), Expect = 0.42,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 4/69 (5%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           +    P  R     +    G+ RC+ C  C   CP  A+T          T       I 
Sbjct: 663 RPVVRPDCRPNFGGQGVRMGDSRCVQCGACVQACPVGAMTDARDRSQGRETPLKKVDTI- 721

Query: 100 MIKCIYCGL 108
              C YCG+
Sbjct: 722 ---CTYCGV 727


>gi|303257312|ref|ZP_07343326.1| putative 4Fe-4S binding domain protein [Burkholderiales bacterium
           1_1_47]
 gi|302860803|gb|EFL83880.1| putative 4Fe-4S binding domain protein [Burkholderiales bacterium
           1_1_47]
          Length = 390

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 7/64 (10%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
              C  C +C  +CPA  +  +             +   D ++CI C  C EACP  A+V
Sbjct: 290 PNLCNGCNICALLCPAGCLQSKESEN-------NFKLLADPLRCIGCNRCTEACPTQALV 342

Query: 120 EGPN 123
               
Sbjct: 343 MRKI 346


>gi|302390656|ref|YP_003826477.1| pyruvate ferredoxin oxidoreductase, delta subunit
           [Thermosediminibacter oceani DSM 16646]
 gi|302201284|gb|ADL08854.1| pyruvate ferredoxin oxidoreductase, delta subunit
           [Thermosediminibacter oceani DSM 16646]
          Length = 125

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 10/89 (11%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
           +E G+ +    G+   RR    ++RCI C +C   CP  A  I    +      +     
Sbjct: 36  YEPGNANTYETGDWRSRRPVWNKDRCIHCLMCWRYCP-DASVIAKDGKFETFDYKH---- 90

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
                C  CG+C + CPV+AI   P  E 
Sbjct: 91  -----CKGCGICAKVCPVNAIDMFPEDEI 114


>gi|224825660|ref|ZP_03698764.1| electron transport complex, RnfABCDGE type, B subunit [Lutiella
           nitroferrum 2002]
 gi|224601884|gb|EEG08063.1| electron transport complex, RnfABCDGE type, B subunit [Lutiella
           nitroferrum 2002]
          Length = 232

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/126 (19%), Positives = 43/126 (34%), Gaps = 15/126 (11%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            PF      P+ R    ++        CI C LC   CP  AI   +           + 
Sbjct: 64  IPFAADGPQPKPRALAVIQED-----SCIGCTLCIQACPVDAIVGAAK----------LM 108

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRN 155
           + +   +C  C LC   CPVD I   P  +     R+ +    ++     +  ++   R+
Sbjct: 109 HTVIAAECTGCELCVAPCPVDCIDLVPVDDPDDGKREHVMARAQQARKRYEHHQARKARD 168

Query: 156 IVTDSP 161
               + 
Sbjct: 169 QAEKAQ 174


>gi|126465802|ref|YP_001040911.1| ATPase RIL [Staphylothermus marinus F1]
 gi|126014625|gb|ABN70003.1| ABC transporter related [Staphylothermus marinus F1]
          Length = 601

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 22/67 (32%), Gaps = 6/67 (8%)

Query: 59  GEERCIA--CK-LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
             E C    C   C   CP      +         +  V   I    CI CG+C + CP 
Sbjct: 8   DREYCKPNKCNLECIRFCPVNKTKRKKAIELSPDGKHAV---IYEDICIGCGICVKKCPF 64

Query: 116 DAIVEGP 122
           +AI    
Sbjct: 65  NAISIVN 71


>gi|121535147|ref|ZP_01666963.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
 gi|121306256|gb|EAX47182.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
          Length = 186

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 5/60 (8%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C  C  C  +CP+ A+T  +      GT       I   +C+ C  C + CP  AI + P
Sbjct: 86  CTLCMKCTQVCPSGALTPIAPQAAKMGTAV-----ILENECVGCDKCIKPCPTGAISKVP 140



 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 9/55 (16%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
             C+ C  C   CP  AI+   G R            +D  KC  C  C +ACPV
Sbjct: 119 NECVGCDKCIKPCPTGAISKVPGKRLVL---------VDPAKCTGCMSCVKACPV 164


>gi|85857983|ref|YP_460185.1| heterodisulfide reductase subunit A and related polyferredoxins
            [Syntrophus aciditrophicus SB]
 gi|85721074|gb|ABC76017.1| heterodisulfide reductase, subunit A and related polyferredoxins
            [Syntrophus aciditrophicus SB]
          Length = 1039

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 7/64 (10%)

Query: 59   GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E+ C+AC  C   C   AI  +   +         +  +  + C  CGLC   CP  AI
Sbjct: 953  NEKMCMACGACVPACTYGAIEFKETKQG-------KKASVIPVLCKGCGLCNSKCPTGAI 1005

Query: 119  VEGP 122
                
Sbjct: 1006 QLKH 1009



 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 27/91 (29%), Gaps = 4/91 (4%)

Query: 28  FKAKTTINYPFEKGSTSPRFRGEHALRR-YPNGEERCIACKLC---EAICPAQAITIESG 83
           FK       P   G  +   +              + + CK     E I  A+  ++E  
Sbjct: 42  FKVYFVEKSPTVGGKMAHLDKTFPTNDCSMCIESPKFVECKRHPNIEMITYAEVESVEGE 101

Query: 84  PRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 T       ID  KC  C  C E CP
Sbjct: 102 AGDFTVTVVKKPRYIDESKCTGCTTCVEYCP 132


>gi|37675860|ref|NP_936256.1| anaerobic dehydrogenase [Vibrio vulnificus YJ016]
 gi|37200399|dbj|BAC96226.1| anaerobic dehydrogenase [Vibrio vulnificus YJ016]
          Length = 1399

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 11/71 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM-----------IKCIYCG 107
              RCI+C  C   C  Q++         +  R  VR D               +C+ CG
Sbjct: 631 DANRCISCGQCIQACREQSVQGVLSFMNLEKGRPVVRPDCRPNFGGQGVRMGDSRCVQCG 690

Query: 108 LCQEACPVDAI 118
            C +ACPV A+
Sbjct: 691 ACVQACPVGAM 701



 Score = 38.2 bits (87), Expect = 0.42,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 4/69 (5%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           +    P  R     +    G+ RC+ C  C   CP  A+T          T       I 
Sbjct: 663 RPVVRPDCRPNFGGQGVRMGDSRCVQCGACVQACPVGAMTDARDRSQGRETPLKKVDTI- 721

Query: 100 MIKCIYCGL 108
              C YCG+
Sbjct: 722 ---CTYCGV 727


>gi|15641524|ref|NP_231156.1| iron-sulfur cluster-binding protein [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121587222|ref|ZP_01676996.1| iron-sulfur cluster-binding protein [Vibrio cholerae 2740-80]
 gi|153818533|ref|ZP_01971200.1| iron-sulfur cluster-binding protein [Vibrio cholerae NCTC 8457]
 gi|153822815|ref|ZP_01975482.1| iron-sulfur cluster-binding protein [Vibrio cholerae B33]
 gi|227081674|ref|YP_002810225.1| iron-sulfur cluster-binding protein [Vibrio cholerae M66-2]
 gi|229508536|ref|ZP_04398039.1| iron-sulfur cluster-binding protein [Vibrio cholerae BX 330286]
 gi|229511393|ref|ZP_04400872.1| iron-sulfur cluster-binding protein [Vibrio cholerae B33]
 gi|229518532|ref|ZP_04407975.1| iron-sulfur cluster-binding protein [Vibrio cholerae RC9]
 gi|229607941|ref|YP_002878589.1| iron-sulfur cluster-binding protein [Vibrio cholerae MJ-1236]
 gi|254848637|ref|ZP_05237987.1| iron-sulfur cluster-binding protein [Vibrio cholerae MO10]
 gi|262161670|ref|ZP_06030688.1| iron-sulfur cluster-binding protein [Vibrio cholerae INDRE 91/1]
 gi|298498397|ref|ZP_07008204.1| iron-sulfur cluster-binding protein [Vibrio cholerae MAK 757]
 gi|9656020|gb|AAF94670.1| iron-sulfur cluster-binding protein [Vibrio cholerae O1 biovar El
           Tor str. N16961]
 gi|121548565|gb|EAX58619.1| iron-sulfur cluster-binding protein [Vibrio cholerae 2740-80]
 gi|126510936|gb|EAZ73530.1| iron-sulfur cluster-binding protein [Vibrio cholerae NCTC 8457]
 gi|126519674|gb|EAZ76897.1| iron-sulfur cluster-binding protein [Vibrio cholerae B33]
 gi|227009562|gb|ACP05774.1| iron-sulfur cluster-binding protein [Vibrio cholerae M66-2]
 gi|229343221|gb|EEO08196.1| iron-sulfur cluster-binding protein [Vibrio cholerae RC9]
 gi|229351358|gb|EEO16299.1| iron-sulfur cluster-binding protein [Vibrio cholerae B33]
 gi|229354490|gb|EEO19413.1| iron-sulfur cluster-binding protein [Vibrio cholerae BX 330286]
 gi|229370596|gb|ACQ61019.1| iron-sulfur cluster-binding protein [Vibrio cholerae MJ-1236]
 gi|254844342|gb|EET22756.1| iron-sulfur cluster-binding protein [Vibrio cholerae MO10]
 gi|262028402|gb|EEY47057.1| iron-sulfur cluster-binding protein [Vibrio cholerae INDRE 91/1]
 gi|297542730|gb|EFH78780.1| iron-sulfur cluster-binding protein [Vibrio cholerae MAK 757]
          Length = 553

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 9/75 (12%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             C  C  C A+CP +A+ +                      C+ CGLC +ACP   +  
Sbjct: 418 SDCTLCMSCVAVCPTRALHLAGDSPA---------LRFIEQDCVQCGLCVKACPEQVLSA 468

Query: 121 GPNFEFATETRQELY 135
            P   +    RQ + 
Sbjct: 469 TPQLNWNKAARQGVV 483



 Score = 41.6 bits (96), Expect = 0.035,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 14/81 (17%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           C+ C   CPA A++ E   +         R  I+   C   G C  ACP +AI     + 
Sbjct: 186 CERCVDACPAGALSSEGSEQTGH------RIQINPYLCQGVGTCATACPTEAIH----YA 235

Query: 126 FA-TETRQELYYDKERLLNNG 145
                  Q+     ERLL N 
Sbjct: 236 LPNPTDTQKFI---ERLLANY 253



 Score = 34.3 bits (77), Expect = 5.5,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 8/24 (33%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVE 120
           +     C  C  C   CP  A+  
Sbjct: 414 ECQTSDCTLCMSCVAVCPTRALHL 437


>gi|315924580|ref|ZP_07920799.1| electron transport complex protein RnfB [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315622110|gb|EFV02072.1| electron transport complex protein RnfB [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 289

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 11/56 (19%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           CIAC LCE  CP  AI +E                ID  KC  CG+C + CP  A+
Sbjct: 217 CIACGLCEKNCPFDAIHVEGNLAV-----------IDYSKCTNCGICVKKCPTHAL 261



 Score = 42.0 bits (97), Expect = 0.024,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 5/78 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV-----RYDIDMIKCIYCGLCQEAC 113
               C+AC  C  ICP   + +    +      ++            + CI CGLC++ C
Sbjct: 168 NINNCVACGKCVTICPKHVMRLIPKDQIVHVDCQSTEKGKLVRQGCSVGCIACGLCEKNC 227

Query: 114 PVDAIVEGPNFEFATETR 131
           P DAI    N      ++
Sbjct: 228 PFDAIHVEGNLAVIDYSK 245



 Score = 34.7 bits (78), Expect = 4.0,   Method: Composition-based stats.
 Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 10/60 (16%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+    C ++C   A+ +                 +++  C+ CG C   CP   +   P
Sbjct: 142 CVGLGSCVSVCEFDALHMTDKQLPE----------VNINNCVACGKCVTICPKHVMRLIP 191


>gi|295108722|emb|CBL22675.1| hypothetical protein [Ruminococcus obeum A2-162]
          Length = 252

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 33/96 (34%), Gaps = 12/96 (12%)

Query: 27  FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC 86
           F   +  +   F  G  +P F            ++ CI C  C   CP   I +E+G   
Sbjct: 153 FSVPRNNLYDRFMSGPVNPIFYQFFVKATAFQTDDTCIGCGQCVKNCPQNNIALENGKP- 211

Query: 87  HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                      I   +C +C  C   CP +AI  G 
Sbjct: 212 -----------IWGKQCTHCMACICYCPTEAIEYGK 236


>gi|167767598|ref|ZP_02439651.1| hypothetical protein CLOSS21_02125 [Clostridium sp. SS2/1]
 gi|167710717|gb|EDS21296.1| hypothetical protein CLOSS21_02125 [Clostridium sp. SS2/1]
          Length = 266

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 12/88 (13%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
            +   +  +R  + +   P    +C +C +C   CPA AI+ +                 
Sbjct: 171 VELPGNHNYREYNGVPLKPVANGKCTSCGICAKECPAGAISKDDPKVTDK---------- 220

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEF 126
              KCI C  C   CP  A       E 
Sbjct: 221 --EKCISCMHCVAVCPQKARHCNKVMEL 246


>gi|167562064|ref|ZP_02354980.1| ferredoxin [Burkholderia oklahomensis EO147]
          Length = 155

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 26/81 (32%), Gaps = 10/81 (12%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
             +P    E         E+ CI C LC   CP  AI                 + I   
Sbjct: 66  PLNPEHGVERPRPVAFIDEQLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVAE 115

Query: 102 KCIYCGLCQEACPVDAIVEGP 122
            C  C LC   CPVD I   P
Sbjct: 116 LCTGCDLCVPPCPVDCIAMIP 136


>gi|21212953|emb|CAD21593.1| putative ribonuclease L inhibitor [Trypanosoma brucei]
          Length = 631

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 19/54 (35%)

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C   C         G  C    +++    I    CI CGLC + CP  AI    
Sbjct: 30  CNLECSKCCPVNLQGKLCVVVQKKSTISVISEELCIGCGLCVKKCPYGAIQIIN 83


>gi|332289789|ref|YP_004420641.1| electron transport complex protein RnfB [Gallibacterium anatis
           UMN179]
 gi|330432685|gb|AEC17744.1| electron transport complex protein RnfB [Gallibacterium anatis
           UMN179]
          Length = 202

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 24/74 (32%), Gaps = 10/74 (13%)

Query: 47  FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
           F  E   +     EE CI C  C   CP  AI   +             + +    C  C
Sbjct: 103 FEEEPVPKVAFIHEEMCIGCTKCIQACPVDAIIGANK----------ALHTVIPDLCTGC 152

Query: 107 GLCQEACPVDAIVE 120
            LC   CP D I  
Sbjct: 153 ELCVAPCPTDCITM 166


>gi|312795432|ref|YP_004028354.1| NAD-dependent formate dehydrogenase alpha subunit (fdsA)
           [Burkholderia rhizoxinica HKI 454]
 gi|312167207|emb|CBW74210.1| NAD-dependent formate dehydrogenase alpha subunit (fdsA) (EC
           1.2.1.2) [Burkholderia rhizoxinica HKI 454]
          Length = 979

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 23/75 (30%), Gaps = 3/75 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     +G         +        +C+ CG C  
Sbjct: 181 YFTYDASKCIVCNRCVRACEQTQGTFALTIAGRGFESRVAASEGVSFMASECVSCGACVA 240

Query: 112 ACPVDAIVEGPNFEF 126
           ACP   + E    E 
Sbjct: 241 ACPTATLHEKSIAEL 255


>gi|307823741|ref|ZP_07653969.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Methylobacter
           tundripaludum SV96]
 gi|307735035|gb|EFO05884.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Methylobacter
           tundripaludum SV96]
          Length = 1212

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 28/109 (25%), Gaps = 25/109 (22%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQ------------AITIESGPRCHDGTRRT---- 93
             AL       + C  C  C  +CP              A   E+        +      
Sbjct: 687 NLALEIPVWETDLCTQCGKCVMVCPHSVIRSKIYSTEVLAKAPETFKHAPMLGKDFPAGL 746

Query: 94  -VRYDIDMIKCIYCGLCQEACPVD--------AIVEGPNFEFATETRQE 133
            + Y +    C  C LC + CP+         AI   P        R  
Sbjct: 747 EITYQVAPEDCTGCTLCVDICPIRDKSNASRKAINMRPQPPLRETERDN 795


>gi|296102656|ref|YP_003612802.1| electron transport complex protein RnfB [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295057115|gb|ADF61853.1| electron transport complex protein RnfB [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 192

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 23/76 (30%), Gaps = 10/76 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   +             + +    C  C LC   CP   I
Sbjct: 113 DEANCIGCTKCIQACPVDAIVGAT----------RAMHTVVADLCTGCNLCVAPCPTQCI 162

Query: 119 VEGPNFEFATETRQEL 134
              P        + +L
Sbjct: 163 ELRPVETTTESWKWDL 178



 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C  C +ACPVDAI
Sbjct: 112 IDEANCIGCTKCIQACPVDAI 132


>gi|269962089|ref|ZP_06176443.1| electron transport complex protein RnfB [Vibrio harveyi 1DA3]
 gi|269833173|gb|EEZ87278.1| electron transport complex protein RnfB [Vibrio harveyi 1DA3]
          Length = 197

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 28/87 (32%), Gaps = 11/87 (12%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103
           S               E+ CI C  C   CP  AI   +             + +   +C
Sbjct: 95  SAHDLDSKVKTVAFIHEDMCIGCTKCIQACPVDAIVGGTK----------ALHTVIKDEC 144

Query: 104 IYCGLCQEACPVDAIVEGPNFEFATET 130
             C LC   CP D I   P  E  TE+
Sbjct: 145 TGCDLCVAPCPTDCIEMIPV-ETTTES 170


>gi|261332118|emb|CBH15111.1| ATP-binding cassette sub-family E, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 631

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 19/54 (35%)

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C   C         G  C    +++    I    CI CGLC + CP  AI    
Sbjct: 30  CNLECSKCCPVNLQGKLCVVVQKKSTISVISEELCIGCGLCVKKCPYGAIQIIN 83


>gi|238790209|ref|ZP_04633985.1| Electron transport complex protein rnfC [Yersinia frederiksenii
           ATCC 33641]
 gi|238721747|gb|EEQ13411.1| Electron transport complex protein rnfC [Yersinia frederiksenii
           ATCC 33641]
          Length = 567

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 3/103 (2%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C LC   CPA  +  +       G       + ++  CI CG C   CP   I  
Sbjct: 351 QACIRCGLCVDACPAS-LLPQQLYWFSRGEEHEKARNHNLFDCIECGACAYVCP-SNIPL 408

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
              +       + L  +  R      R+E++  R +  +   R
Sbjct: 409 VQYYRQEKAEIRALDEESARAAEAKARFEAKQAR-LQREKLAR 450


>gi|298528247|ref|ZP_07015651.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511899|gb|EFI35801.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 774

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 36/112 (32%), Gaps = 20/112 (17%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEH--ALRRYPNGEERCIACKLCEAICPAQAI 78
              LRYF          +E+       R      +  +   ++ CI C LC   C   A+
Sbjct: 534 ATTLRYF-------REEYEEHIHDKYCRANVCSGMGVFTIDQKACILCGLCRDACAFDAV 586

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
                        R   Y ID   C  C  C E CPV A+      + A E 
Sbjct: 587 RE-----------RRSSYFIDQEYCTKCKACFEICPVGAVKVKKKAQIAVEK 627


>gi|91215520|ref|ZP_01252491.1| Pyridine nucleotide-disulphide oxidoreductase domain protein
           [Psychroflexus torquis ATCC 700755]
 gi|91186472|gb|EAS72844.1| Pyridine nucleotide-disulphide oxidoreductase domain protein
           [Psychroflexus torquis ATCC 700755]
          Length = 528

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 26/83 (31%), Gaps = 15/83 (18%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           +CI+C  C   C           +           +I    C+ CG+C   CP   +   
Sbjct: 449 QCISCGNCTTYCEMGIDVRAYAQKGE---------NIVRSSCVGCGICASVCPRGVLKLE 499

Query: 122 PNFEFATETRQELYYDKERLLNN 144
            +      T       KE LL N
Sbjct: 500 ND------TPVGRINSKEILLGN 516


>gi|238796412|ref|ZP_04639921.1| Pyruvate-flavodoxin oxidoreductase [Yersinia mollaretii ATCC 43969]
 gi|238719857|gb|EEQ11664.1| Pyruvate-flavodoxin oxidoreductase [Yersinia mollaretii ATCC 43969]
          Length = 1177

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 32/142 (22%), Gaps = 32/142 (22%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A        + C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSAFPPDGTWPVGTTQWEKRNIAEDIPIWQPDLCTQCNHCVAAC 699

Query: 74  --------------PAQAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPV-- 115
                          A A              R  +Y   +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVQPDAMADAPDSLQSLDVKARDMRGQKYVLQVAPEDCTGCNLCYEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETR 131
                  AI   P  E   E +
Sbjct: 760 RQNPEIKAINMKPRLEHLVEEK 781


>gi|332981894|ref|YP_004463335.1| electron transfer flavoprotein subunit alpha [Mahella australiensis
           50-1 BON]
 gi|332699572|gb|AEE96513.1| Electron transfer flavoprotein alpha subunit [Mahella australiensis
           50-1 BON]
          Length = 397

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 28/113 (24%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E C  C +C   CP  AI +E+               + +  C  CG C +AC  DAI  
Sbjct: 8   ENCTGCAVCVRACPFGAIKMENDKA------------VILDNCTLCGSCADACKFDAIDF 55

Query: 121 -----GPNFEFATETRQELYYDKER----------LLNNGDRWESEIVRNIVT 158
                    + ++  R    + +++          LL  G     ++ +++  
Sbjct: 56  QAERGTGMGDLSSY-RDVWVFAEQKDGVIDSAAFELLGVGRHLADQLGQDLAA 107



 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 11/27 (40%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPN 123
            I    C  C +C  ACP  AI    +
Sbjct: 4   RIIEENCTGCAVCVRACPFGAIKMEND 30


>gi|310777922|ref|YP_003966255.1| 6-hydroxynicotinate reductase [Ilyobacter polytropus DSM 2926]
 gi|309747245|gb|ADO81907.1| 6-hydroxynicotinate reductase [Ilyobacter polytropus DSM 2926]
          Length = 505

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 12/69 (17%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 ++C  CK+C   CP  AI +                 +    C+ CG+C   CP
Sbjct: 1   MIKIDLKKCKGCKICANNCPISAIDMLDKKA------------LIKDNCVSCGICLRVCP 48

Query: 115 VDAIVEGPN 123
             AI +   
Sbjct: 49  FAAIEKTTE 57


>gi|302387080|ref|YP_003822902.1| Dinitrogenase iron-molybdenum cofactor biosynthesis protein
           [Clostridium saccharolyticum WM1]
 gi|302197708|gb|ADL05279.1| Dinitrogenase iron-molybdenum cofactor biosynthesis protein
           [Clostridium saccharolyticum WM1]
          Length = 416

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 22/108 (20%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER-------CIACKLCEAICPA 75
            L    K    ++   +  +    ++G    ++   G ++       CI C++CE +C  
Sbjct: 20  ALSEIAKKVIKVDCDVDAPNLYLFYKGTDIEKKNFYGGKKARINRSLCINCEICEEVCKF 79

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
            AI                   ID+  C  CG C+  CP +AI     
Sbjct: 80  GAIKN---------------CTIDLFSCEGCGACKVVCPQNAISLVEE 112


>gi|260773217|ref|ZP_05882133.1| electron transport complex protein RnfB [Vibrio metschnikovii CIP
           69.14]
 gi|260612356|gb|EEX37559.1| electron transport complex protein RnfB [Vibrio metschnikovii CIP
           69.14]
          Length = 195

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 24/79 (30%), Gaps = 10/79 (12%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103
           S               E+ CI C  C   CP  AI   +             + +   +C
Sbjct: 95  SAHDLDNKVKTVAFIHEDMCIGCTKCIQACPVDAIVGGTK----------ALHTVIKDEC 144

Query: 104 IYCGLCQEACPVDAIVEGP 122
             C LC   CP D I   P
Sbjct: 145 TGCDLCVAPCPTDCIEMIP 163


>gi|218886951|ref|YP_002436272.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218757905|gb|ACL08804.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 1215

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 22/93 (23%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITI------------------ESGPRCHDGTRR 92
            A+       E CI C  C  +CP  AI                    E+  +  +G + 
Sbjct: 676 VAITVPEWLSENCIQCNQCSFVCPHAAIRPILASDEELAGAPASFVAIEAKGKELNGLKY 735

Query: 93  TVRYDIDMIKCIYCGLCQEACPV--DAIVEGPN 123
             R  +    C+ CG C + CP    A+V  P 
Sbjct: 736 --RMQVYAQDCMGCGSCADVCPAKNKALVMKPI 766


>gi|210616163|ref|ZP_03290966.1| hypothetical protein CLONEX_03185 [Clostridium nexile DSM 1787]
 gi|210149925|gb|EEA80934.1| hypothetical protein CLONEX_03185 [Clostridium nexile DSM 1787]
          Length = 626

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/97 (25%), Positives = 35/97 (36%), Gaps = 15/97 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            LRY F+ +   +   +K            L +Y    ++C  C LC   CP  AI    
Sbjct: 543 TLRY-FRDEYIAHIVDKKCPAGVC----KELLQYKIDADKCKGCTLCARTCPNNAIIGSV 597

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
                        + ID  +C+ CG C E C   AI 
Sbjct: 598 KE----------VHMIDQSRCVKCGACMEKCRFGAIY 624


>gi|197295563|ref|YP_002154104.1| dihydropyrimidine dehydrogenase [Burkholderia cenocepacia J2315]
 gi|195945042|emb|CAR57667.1| putative dihydroorotate dehydrogenase family protein [Burkholderia
           cenocepacia J2315]
          Length = 438

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 6/63 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117
            ++RCI C LC   C     + ++     DG R    +++    C+ C LC   CPV   
Sbjct: 341 DQDRCIQCGLCHIACED--TSHQAITATKDGVR---HFEVVDSACVGCNLCMHVCPVEQC 395

Query: 118 IVE 120
           I  
Sbjct: 396 ITM 398


>gi|169334684|ref|ZP_02861877.1| hypothetical protein ANASTE_01087 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257422|gb|EDS71388.1| hypothetical protein ANASTE_01087 [Anaerofustis stercorihominis DSM
           17244]
          Length = 486

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 26/83 (31%), Gaps = 4/83 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIES---GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
              +CI C  C ++C  +                        I    CI CG C   CP 
Sbjct: 139 DLSKCIKCNRCVSMCSDKVGASAISLINRSEETTVATPFNIPIIHSDCIGCGQCITVCPT 198

Query: 116 DA-IVEGPNFEFATETRQELYYD 137
            A I  G   E      ++ YY+
Sbjct: 199 GALIERGTTEEIYDLLGEDTYYN 221


>gi|56387327|gb|AAV86076.1| uptake hydrogenase [Clostridium saccharoperbutylacetonicum ATCC
           27021]
          Length = 562

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 3/70 (4%)

Query: 59  GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQEACPV 115
            + +CI C  C  +C   Q +              T  +D  I    C+ CG C   CP 
Sbjct: 143 NKSKCILCGDCVRVCEEVQNVGAIDFVGRGSKMTVTTAFDEPIGHSNCVSCGQCAAVCPT 202

Query: 116 DAIVEGPNFE 125
            AIV   N E
Sbjct: 203 GAIVVRSNTE 212


>gi|71746730|ref|XP_822420.1| ribonuclease L inhibitor [Trypanosoma brucei TREU927]
 gi|70832088|gb|EAN77592.1| ribonuclease L inhibitor, putative [Trypanosoma brucei]
          Length = 631

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 19/54 (35%)

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C   C         G  C    +++    I    CI CGLC + CP  AI    
Sbjct: 30  CNLECSKCCPVNLQGKLCVVVQKKSTISVISEELCIGCGLCVKKCPYGAIQIIN 83


>gi|332883529|gb|EGK03812.1| hypothetical protein HMPREF9456_01879 [Dysgonomonas mossii DSM
           22836]
          Length = 430

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 1/73 (1%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
             +    G   L++       CI+C  C  +CP + + ++         +       ++ 
Sbjct: 335 PVTKGASGILFLKKEEVKRSNCISCGYCVDVCPMRLMPMKFEENY-RKKKYFNLEKYNIS 393

Query: 102 KCIYCGLCQEACP 114
            CI C  C+  CP
Sbjct: 394 SCIECAACEYICP 406



 Score = 37.8 bits (86), Expect = 0.52,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 4/56 (7%)

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140
           +   G     + ++    CI CG C + CP+  +       +    R++ Y++ E+
Sbjct: 338 KGASGILFLKKEEVKRSNCISCGYCVDVCPMRLMPMKFEENY----RKKKYFNLEK 389


>gi|313900104|ref|ZP_07833604.1| sulfite reductase, subunit C [Clostridium sp. HGF2]
 gi|312955156|gb|EFR36824.1| sulfite reductase, subunit C [Clostridium sp. HGF2]
          Length = 334

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 28/98 (28%), Gaps = 8/98 (8%)

Query: 25  RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84
            ++         P +         G   L +     + CI C  C   C + A  + S  
Sbjct: 140 SHYHIKAAVAGCPNDCAKGHFNDFGIIGLTKPTYHSDLCIGCGSCVKACESHATRVLSLK 199

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                             C+ CG C   CP +A+   P
Sbjct: 200 NGKIEKDTC--------CCVGCGECTLVCPTNAMQRSP 229


>gi|294341669|emb|CAZ90088.1| putative 4Fe-4S ferredoxin [Thiomonas sp. 3As]
          Length = 736

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 24/80 (30%), Gaps = 9/80 (11%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     L        RC  C  C   CPA A+             +          
Sbjct: 587 IPLPHGAGSPLGAIRVDASRCTLCLSCVGACPAGALADNPLAPQLRFIEKN--------- 637

Query: 103 CIYCGLCQEACPVDAIVEGP 122
           C+ CGLC + CP DAI   P
Sbjct: 638 CVQCGLCVKTCPEDAIRLEP 657



 Score = 41.6 bits (96), Expect = 0.034,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 16/69 (23%)

Query: 66  CKLCEAICPAQAITIESGPRCHD----------------GTRRTVRYDIDMIKCIYCGLC 109
           C  C  IC AQA+   +  R                         + +ID   C+ CG C
Sbjct: 328 CHACIDICSAQAVHSRARLRPDQTPPIAEADSILPTAAQKKPFVEQIEIDPHLCVGCGAC 387

Query: 110 QEACPVDAI 118
              CP  A+
Sbjct: 388 TTVCPTGAL 396



 Score = 33.9 bits (76), Expect = 8.3,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 14/55 (25%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
             + C  C  C A CP  AI ++              Y ID+ +C     C +AC
Sbjct: 201 DLDVCTRCNACLAACPEGAIGLD--------------YQIDLQRCTGHRDCVQAC 241


>gi|268325665|emb|CBH39253.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit A
           [uncultured archaeon]
          Length = 729

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 28/90 (31%), Gaps = 17/90 (18%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              EE CI C  C  +CP  A+ ++                ++   C  CG C   CP  
Sbjct: 620 QINEEICIGCGTCAEVCPYGALELDE---------VMQVMTVNEAVCKGCGGCNSVCPSG 670

Query: 117 AIVEGPNFEFATETRQELYY-DKERLLNNG 145
           A             R    Y   E LL  G
Sbjct: 671 AATMKHY-------RDRQVYAQIEALLERG 693



 Score = 34.3 bits (77), Expect = 6.2,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 19/39 (48%)

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
           +     IDM KC  C  C EACPV  I +  N   +T +
Sbjct: 261 KRKPRYIDMDKCKDCTPCIEACPVKDIPDEFNEGLSTRS 299


>gi|291288393|ref|YP_003505209.1| NADH:ubiquinone oxidoreductase, subunit G, iron- sulfur binding
           protein [Denitrovibrio acetiphilus DSM 12809]
 gi|290885553|gb|ADD69253.1| NADH:ubiquinone oxidoreductase, subunit G, iron- sulfur binding
           protein [Denitrovibrio acetiphilus DSM 12809]
          Length = 748

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 28/90 (31%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
            E+ S+           +       C+ C+ C   C                        
Sbjct: 120 EEQVSSDKPAEPIEYWNKIVYNSNLCVLCEKCIKSCHEMTGCSALKMEDRGFYNHVTPSK 179

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
            D +KC +CG C + CPV A+++      A
Sbjct: 180 GDTLKCDFCGTCIDRCPVGALLDSQFHHSA 209


>gi|261341169|ref|ZP_05969027.1| putative pyruvate formate-lyase 1 activating enzyme [Enterobacter
           cancerogenus ATCC 35316]
 gi|288316464|gb|EFC55402.1| putative pyruvate formate-lyase 1 activating enzyme [Enterobacter
           cancerogenus ATCC 35316]
          Length = 319

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 10/71 (14%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G H  R      ERC+ C  C  +CP    + + G    +  R           C  CGL
Sbjct: 54  GLHPGREIFFHAERCLHCGQCAQLCPTGLHSWQDGLHSLNRDR----------SCTGCGL 103

Query: 109 CQEACPVDAIV 119
           C+E CP  A+ 
Sbjct: 104 CEERCPAAALN 114



 Score = 33.9 bits (76), Expect = 7.2,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 19/61 (31%), Gaps = 8/61 (13%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
               G    +  K C+  C   A          +G            +C++CG C + CP
Sbjct: 28  HDGPGIRSIVFFKGCQMRCAWCAN--------PEGLHPGREIFFHAERCLHCGQCAQLCP 79

Query: 115 V 115
            
Sbjct: 80  T 80


>gi|225028858|ref|ZP_03718050.1| hypothetical protein EUBHAL_03145 [Eubacterium hallii DSM 3353]
 gi|224953813|gb|EEG35022.1| hypothetical protein EUBHAL_03145 [Eubacterium hallii DSM 3353]
          Length = 448

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 14/78 (17%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C  C  C A+C                  + +    +  +CI CG C   CP  AI   P
Sbjct: 27  CSECGHCFAVC----------EEEIGVAAKYLLNQREAYQCIGCGQCSAVCPEKAITGRP 76

Query: 123 NFEFATETRQELYYDKER 140
           +++      +EL  D E+
Sbjct: 77  HYKIV----KELIQDPEK 90


>gi|254486059|ref|ZP_05099264.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Roseobacter sp.
           GAI101]
 gi|214042928|gb|EEB83566.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Roseobacter sp.
           GAI101]
          Length = 390

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 11/62 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E CI C  CE  CP  AI  +                ++   C +C  C   CP  +I
Sbjct: 11  DPEICIRCYTCEMTCPVGAIEHDDNNVV-----------VNFDTCNFCMDCIPVCPTGSI 59

Query: 119 VE 120
            E
Sbjct: 60  DE 61



 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 13/26 (50%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPN 123
           ID   CI C  C+  CPV AI    N
Sbjct: 10  IDPEICIRCYTCEMTCPVGAIEHDDN 35


>gi|158320980|ref|YP_001513487.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing
           protein [Alkaliphilus oremlandii OhILAs]
 gi|158141179|gb|ABW19491.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Alkaliphilus oremlandii OhILAs]
          Length = 1176

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 31/103 (30%), Gaps = 19/103 (18%)

Query: 28  FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ----------- 76
           FK      YP   G+T+   RG   +       E+CI C  C  +CP             
Sbjct: 657 FKGMEDGTYPL--GTTAYEKRGIAVMIPQWQ-IEKCIQCNQCSYVCPHAVIRPFLLDEKE 713

Query: 77  -----AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                A                 R  +  + C  CG C + CP
Sbjct: 714 MKQKPADFETKDAMGKGVEHLQYRIQVSPLDCTGCGNCADICP 756


>gi|322804288|emb|CBZ01838.1| iron-sulfur cluster-binding protein [Clostridium botulinum H04402
           065]
          Length = 387

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           E+CI C  C  +CP +   I+   +             +M KCI C  CQE CP  AI
Sbjct: 319 EKCIGCNRCAEVCPEKPYVIDMIKKGDKKIPVW-----NMKKCIRCFCCQELCPKGAI 371


>gi|217967483|ref|YP_002352989.1| electron transport complex, RnfABCDGE type, B subunit [Dictyoglomus
           turgidum DSM 6724]
 gi|217336582|gb|ACK42375.1| electron transport complex, RnfABCDGE type, B subunit [Dictyoglomus
           turgidum DSM 6724]
          Length = 266

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 11/62 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + CI C +CE +CP  AI ++                ID   C  CG+C E CP  A+
Sbjct: 213 CSKACIGCGICEKVCPKGAIKMDG-----------RFPVIDYNLCDGCGICVEKCPTKAL 261

Query: 119 VE 120
           + 
Sbjct: 262 IL 263



 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 27/77 (35%), Gaps = 5/77 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-----DIDMIKCIYCGLCQEAC 113
             E+C  C LC   CP   +T+           +T         +    CI CG+C++ C
Sbjct: 168 DMEKCTGCGLCVKACPRGILTLLPVDIPLLLGCKTELPGPEARRVCSKACIGCGICEKVC 227

Query: 114 PVDAIVEGPNFEFATET 130
           P  AI     F      
Sbjct: 228 PKGAIKMDGRFPVIDYN 244



 Score = 42.0 bits (97), Expect = 0.029,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 22/59 (37%), Gaps = 10/59 (16%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           Y      C+    C   CP  AI +                 IDM KC  CGLC +ACP
Sbjct: 135 YKGCPTGCLGFGDCVKACPFDAIHMGEDGLPK----------IDMEKCTGCGLCVKACP 183


>gi|168207991|ref|ZP_02633996.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium
           perfringens E str. JGS1987]
 gi|170660717|gb|EDT13400.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium
           perfringens E str. JGS1987]
          Length = 273

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/70 (37%), Positives = 30/70 (42%), Gaps = 11/70 (15%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
               N    CI CKLCE  CP++AI IE+               ID  KC  CG+C   C
Sbjct: 210 IVNQNCSVGCIGCKLCEKNCPSEAIRIENNLAI-----------IDYEKCTSCGICVSKC 258

Query: 114 PVDAIVEGPN 123
           P  AI    N
Sbjct: 259 PKKAINLREN 268



 Score = 37.0 bits (84), Expect = 0.78,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 5/78 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCIYCGLCQEAC 113
              +C+ACK C + CP   I I    +    +        +      + CI C LC++ C
Sbjct: 170 DSSKCVACKACVSACPQNLIAIIKENQKVIVSCNSNDSGKIVNQNCSVGCIGCKLCEKNC 229

Query: 114 PVDAIVEGPNFEFATETR 131
           P +AI    N       +
Sbjct: 230 PSEAIRIENNLAIIDYEK 247


>gi|254228961|ref|ZP_04922383.1| formate dehydrogenase, alpha subunit, putative [Vibrio sp. Ex25]
 gi|151938638|gb|EDN57474.1| formate dehydrogenase, alpha subunit, putative [Vibrio sp. Ex25]
          Length = 1422

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 28/84 (33%), Gaps = 19/84 (22%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM------------------ 100
              RCI+C  C   C  QA+            R  +R D                     
Sbjct: 636 DANRCISCGQCIQACREQAVHGVLSFVSDKNGRPALRPDDRPRFRSDEKGASCSGLTLMG 695

Query: 101 -IKCIYCGLCQEACPVDAIVEGPN 123
              C+ CG C +ACP  A+V+  +
Sbjct: 696 NSNCVQCGACVQACPTGAMVDSRD 719



 Score = 33.5 bits (75), Expect = 8.7,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 21/72 (29%), Gaps = 4/72 (5%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P ++       +G         G   C+ C  C   CP  A+            +     
Sbjct: 673 PDDRPRFRSDEKGASCSGLTLMGNSNCVQCGACVQACPTGAMVDSRDRSQGRTEQLKAVD 732

Query: 97  DIDMIKCIYCGL 108
            I    C YCG+
Sbjct: 733 TI----CTYCGV 740


>gi|305662559|ref|YP_003858847.1| ABC transporter related [Ignisphaera aggregans DSM 17230]
 gi|304377128|gb|ADM26967.1| ABC transporter related [Ignisphaera aggregans DSM 17230]
          Length = 608

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 27/84 (32%), Gaps = 5/84 (5%)

Query: 50  EHALRRYPNGEERCIA--CK-LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
              +R      E C    C   C   CP      +        + +  +  I   KCI C
Sbjct: 2   YKMVRVAVIDYELCHPDKCGIPCIRFCPIN--KTKPYKAIEISSEKKGKPIIYEDKCIAC 59

Query: 107 GLCQEACPVDAIVEGPNFEFATET 130
           G+C + CP  AI      E   E 
Sbjct: 60  GICIKKCPFKAIRIVNLPEEIEEN 83


>gi|288560653|ref|YP_003424139.1| energy-converting hydrogenase A subunit P EhaP [Methanobrevibacter
           ruminantium M1]
 gi|288543363|gb|ADC47247.1| energy-converting hydrogenase A subunit P EhaP [Methanobrevibacter
           ruminantium M1]
          Length = 344

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/118 (24%), Positives = 39/118 (33%), Gaps = 22/118 (18%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E       F    + R+Y   +  CI C  C   C   AI                R  +
Sbjct: 108 ENHFIREEFNIIPSKRKYIVDDYLCIRCHKCMDACEVGAIEEFDD-----------RVSV 156

Query: 99  DMIKCIYCGLCQEACPVDAIVEG----------PNFEFATETRQELYYDK-ERLLNNG 145
           +  KCI CG C EACPV   + G               A  T ++    K + L+  G
Sbjct: 157 NQSKCISCGKCLEACPVKGAMRGVFVNNLEEQKKIINLAVTTLEDYIESKQDDLIQLG 214



 Score = 41.6 bits (96), Expect = 0.038,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 32/105 (30%), Gaps = 11/105 (10%)

Query: 10  FLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69
             ++ EF        + +           +      RFR           +E CI C  C
Sbjct: 5   IWYIYEFAR------KTWIDGFFDAKSKEDIAHKPDRFRDFP-----NVIKENCIGCGSC 53

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            A CP+            +     +   I+   CI CG C E CP
Sbjct: 54  TASCPSPNAIKLIRDSDTEDAFGLIYPVINKASCIRCGFCAEVCP 98



 Score = 40.9 bits (94), Expect = 0.061,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 5/75 (6%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV-----RYDIDMIKCIY 105
             L      +  CI C  C  +CP+   T+E G          +     +Y +D   CI 
Sbjct: 75  FGLIYPVINKASCIRCGFCAEVCPSTPKTLECGENHFIREEFNIIPSKRKYIVDDYLCIR 134

Query: 106 CGLCQEACPVDAIVE 120
           C  C +AC V AI E
Sbjct: 135 CHKCMDACEVGAIEE 149



 Score = 38.5 bits (88), Expect = 0.29,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 29/96 (30%), Gaps = 10/96 (10%)

Query: 24  LRYFFKAKTTI-NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            +  F     I N                 +R      E C  C++C   CP  AI+ + 
Sbjct: 225 FKPIFDKSLNILNDKEVVHEVLEDAINRLKIRIITWDSENCKKCQMCIPDCPTGAISFDY 284

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                   +          KC+ C +C + CP   I
Sbjct: 285 DKDTIVRDK---------EKCLRCSICYQTCPFGVI 311


>gi|227486762|ref|ZP_03917078.1| ferredoxin [Anaerococcus lactolyticus ATCC 51172]
 gi|227235232|gb|EEI85247.1| ferredoxin [Anaerococcus lactolyticus ATCC 51172]
          Length = 57

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 11/65 (16%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
             Y   E  CI+C  CE  CP  AI+                Y+ID   CI CG C   C
Sbjct: 1   MAYKIDENTCISCGSCEGECPVGAISQGDAA-----------YEIDANACIDCGSCSAVC 49

Query: 114 PVDAI 118
           PV+AI
Sbjct: 50  PVEAI 54



 Score = 34.3 bits (77), Expect = 5.5,   Method: Composition-based stats.
 Identities = 14/27 (51%), Positives = 16/27 (59%)

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGP 122
           Y ID   CI CG C+  CPV AI +G 
Sbjct: 3   YKIDENTCISCGSCEGECPVGAISQGD 29


>gi|268589520|ref|ZP_06123741.1| electron transport complex, RnfABCDGE type, B subunit [Providencia
           rettgeri DSM 1131]
 gi|291315189|gb|EFE55642.1| electron transport complex, RnfABCDGE type, B subunit [Providencia
           rettgeri DSM 1131]
          Length = 204

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 22/64 (34%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            EE CI C  C   CP  AI   +             + +    C  C LC   CP D I
Sbjct: 113 DEENCIGCTKCIQACPVDAIVGAT----------RAMHTVIEDLCTGCDLCVAPCPTDCI 162

Query: 119 VEGP 122
              P
Sbjct: 163 ELVP 166



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C  C +ACPVDAI
Sbjct: 112 IDEENCIGCTKCIQACPVDAI 132


>gi|218190496|gb|EEC72923.1| hypothetical protein OsI_06764 [Oryza sativa Indica Group]
          Length = 669

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 23/54 (42%)

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C   C  +     +G +C + T  +    I    CI CG+C + CP DAI    
Sbjct: 24  CGQQCRKRCPVNATGRQCIEVTPSSRVSLISEELCIGCGICVKVCPFDAIQIIN 77


>gi|315230439|ref|YP_004070875.1| RNase L inhibitor [Thermococcus barophilus MP]
 gi|315183467|gb|ADT83652.1| RNase L inhibitor [Thermococcus barophilus MP]
          Length = 590

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 24/78 (30%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +R      ++C   K    +C         G           +  I    C  CG+C   
Sbjct: 1   MRVAVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYKPIIQEASCTGCGICVHK 60

Query: 113 CPVDAIVEGPNFEFATET 130
           CP +AI      E  +E 
Sbjct: 61  CPFNAITIVNLPEQLSED 78


>gi|183231916|ref|XP_652137.2| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
 gi|169802287|gb|EAL46751.2| hypothetical protein EHI_134850 [Entamoeba histolytica HM-1:IMSS]
          Length = 469

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 29/103 (28%), Gaps = 10/103 (9%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI----------ESGPRCHDG 89
               S    G+           +C+ C +C   C    +             +       
Sbjct: 2   PPKPSHTITGQDHNNAIEIDWSKCMGCGMCAMRCNYGVLHKSGPRIPPTVTPNRENVTQP 61

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
                R  ID   C+ CG C  AC   AI    + E   E ++
Sbjct: 62  NDDKTRVLIDESDCVGCGQCSSACNFGAIKPVSHIERVFEAKK 104


>gi|28212066|ref|NP_783010.1| anaerobic sulfite reductase subunit C [Clostridium tetani E88]
 gi|28204509|gb|AAO36947.1| anaerobic sulfite reductase subunit C [Clostridium tetani E88]
          Length = 316

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 25/88 (28%), Gaps = 8/88 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +      +  G   +        RCI C+ C  +C                +    +
Sbjct: 145 CPNDCIKARMQDFGIIGMTEPQYDAYRCIGCQACVNVC--------KKKSTGALSFENYK 196

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPN 123
              D  KCI CG C   CP  A      
Sbjct: 197 VVRDHSKCIGCGECINKCPTSAWSRSEE 224


>gi|18977217|ref|NP_578574.1| 2-keto acid:ferredoxin oxidoreductase subunit alpha [Pyrococcus
           furiosus DSM 3638]
 gi|18892876|gb|AAL80969.1| 2-keto acid:ferredoxin oxidoreductase subunit alpha [Pyrococcus
           furiosus DSM 3638]
          Length = 627

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 9/76 (11%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
           P  R           E+RC  CK C  +    A+  E   +         +  ID + C 
Sbjct: 557 PVIRRGEIGEIPVVVEDRCTGCKACILLTGCPALVYEPEKK---------KVRIDPLICT 607

Query: 105 YCGLCQEACPVDAIVE 120
            CG+C + CP DAI  
Sbjct: 608 GCGVCNQLCPFDAIKF 623


>gi|14590719|ref|NP_142789.1| putative ATPase RIL [Pyrococcus horikoshii OT3]
 gi|3257270|dbj|BAA29953.1| 590aa long hypothetical transport protein [Pyrococcus horikoshii
           OT3]
          Length = 590

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 21/73 (28%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +R      ++C   K    +C         G           R  I    C  CG+C   
Sbjct: 1   MRIAVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENNRPIIQEASCTGCGICVHK 60

Query: 113 CPVDAIVEGPNFE 125
           CP  AI      E
Sbjct: 61  CPFKAISIVNLPE 73


>gi|323485112|ref|ZP_08090465.1| hydrogenase [Clostridium symbiosum WAL-14163]
 gi|323693507|ref|ZP_08107713.1| hydrogenase [Clostridium symbiosum WAL-14673]
 gi|323401668|gb|EGA94013.1| hydrogenase [Clostridium symbiosum WAL-14163]
 gi|323502429|gb|EGB18285.1| hydrogenase [Clostridium symbiosum WAL-14673]
          Length = 682

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 27/98 (27%), Gaps = 20/98 (20%)

Query: 27  FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC 86
                  +  P EK + S               E  CI C  C  +C             
Sbjct: 1   MNHLPMNVRVPIEKDNPS-----------ICRDEALCIKCGQCRDVCTD---------YI 40

Query: 87  HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
                 T+        CI CG C   CPV +I E   +
Sbjct: 41  GVHGTYTLEQTGGTAVCINCGQCANVCPVSSITEKYEY 78


>gi|300857164|ref|YP_003782148.1| putative electron transfer flavoprotein subunit alpha [Clostridium
           ljungdahlii DSM 13528]
 gi|300437279|gb|ADK17046.1| predicted electron transfer flavoprotein alpha subunit [Clostridium
           ljungdahlii DSM 13528]
          Length = 429

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 10/61 (16%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C+ C  ICP  A+ I    +                KC  CG C   CPV A+  
Sbjct: 7   DSCIGCESCIPICPFDALGINGEGKLVASK----------EKCTECGKCVSVCPVSALNI 56

Query: 121 G 121
            
Sbjct: 57  S 57


>gi|300856192|ref|YP_003781176.1| putative oxidoreductase [Clostridium ljungdahlii DSM 13528]
 gi|300436307|gb|ADK16074.1| putative oxidoreductase with a 2Fe-2S iron-sulfur cluster domain
           [Clostridium ljungdahlii DSM 13528]
          Length = 710

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 4/81 (4%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK---CIYCGLCQEACP 114
           +   RC+ C  C   C              D           ++K   C +CG C E CP
Sbjct: 141 HDMNRCVLCGRCVRACNDLRGVKVLQYNKKDMETYVGTLQDKLLKDSDCCFCGACAEVCP 200

Query: 115 VDAIVEGPNFEFATETRQELY 135
              I +  N+    E R  L 
Sbjct: 201 TGTIRDMLNYSP-IEKRDTLI 220


>gi|316931523|ref|YP_004106505.1| hydrogenase, Fe-only [Rhodopseudomonas palustris DX-1]
 gi|315599237|gb|ADU41772.1| hydrogenase, Fe-only [Rhodopseudomonas palustris DX-1]
          Length = 619

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 37/118 (31%), Gaps = 14/118 (11%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           L++      L    FF  + T + P ++ S S                 RC+ C+ C AI
Sbjct: 131 LQDLAQFVGLQQNRFFDRERTESRPVDQSSPS-----------MVRDMRRCVRCQRCVAI 179

Query: 73  CPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           C                 R     D        C+ CG C   CP  A+ E    E A
Sbjct: 180 CRYHQKIDALAIEGSGMERVVALRDADGYPNSVCVSCGQCVLVCPTGALGERDETERA 237


>gi|261211645|ref|ZP_05925932.1| iron-sulfur cluster-binding protein [Vibrio sp. RC341]
 gi|260838995|gb|EEX65627.1| iron-sulfur cluster-binding protein [Vibrio sp. RC341]
          Length = 504

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 9/75 (12%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             C  C  C A+CP +A+                        C+ CGLC +ACP   +  
Sbjct: 369 SDCTLCMSCVAVCPTRALHPAGDSPA---------LRFIEQDCVQCGLCVKACPEQVLSA 419

Query: 121 GPNFEFATETRQELY 135
            P   +    RQ + 
Sbjct: 420 TPQLNWNKAARQGVV 434



 Score = 40.9 bits (94), Expect = 0.055,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 12/80 (15%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           C+ C   CPA A++ E   +         R  I+   C   G C  ACP +AI       
Sbjct: 137 CERCVDACPAGALSSEGSEQTGH------RIQINPYLCQGVGTCATACPTEAIH------ 184

Query: 126 FATETRQELYYDKERLLNNG 145
           +A     +     ERLL N 
Sbjct: 185 YALPNPTDTQKFIERLLANY 204



 Score = 33.5 bits (75), Expect = 9.9,   Method: Composition-based stats.
 Identities = 6/23 (26%), Positives = 8/23 (34%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIV 119
           +     C  C  C   CP  A+ 
Sbjct: 365 ECQASDCTLCMSCVAVCPTRALH 387


>gi|260779356|ref|ZP_05888248.1| electron transport complex protein RnfB [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260605520|gb|EEX31815.1| electron transport complex protein RnfB [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 194

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 26/79 (32%), Gaps = 10/79 (12%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103
           S     ++        E+ CI C  C   CP  AI   +             + +   +C
Sbjct: 95  SAHDLDDNVKTVAFIHEDMCIGCTKCIQACPVDAIVGGTK----------ALHTVIKDEC 144

Query: 104 IYCGLCQEACPVDAIVEGP 122
             C LC   CP D I   P
Sbjct: 145 TGCDLCVAPCPTDCIEMIP 163


>gi|238758664|ref|ZP_04619839.1| Pyruvate-flavodoxin oxidoreductase [Yersinia aldovae ATCC 35236]
 gi|238703175|gb|EEP95717.1| Pyruvate-flavodoxin oxidoreductase [Yersinia aldovae ATCC 35236]
          Length = 1177

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 37/144 (25%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A        + C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSAFPPDGTWPVGTTQWEKRNIAEDIPIWQPDLCTQCNHCVAAC 699

Query: 74  PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           P  A                   +++   R   G +      +    C  C LC E CP 
Sbjct: 700 PHSAIRAKVVQPAAMSGAPDSLQSLDVKARDMRGQKY--VLQVAPEDCTGCNLCYEVCPA 757

Query: 116 --------DAIVEGPNFE-FATET 130
                    AI   P  E  A E 
Sbjct: 758 KDRQNPEIKAINMKPRLEHLAAEK 781


>gi|210617173|ref|ZP_03291440.1| hypothetical protein CLONEX_03662 [Clostridium nexile DSM 1787]
 gi|210149448|gb|EEA80457.1| hypothetical protein CLONEX_03662 [Clostridium nexile DSM 1787]
          Length = 1178

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 21/89 (23%), Gaps = 18/89 (20%)

Query: 58  NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRYDIDMIKC 103
              E CI C  C  +CP                A                    +    C
Sbjct: 688 WQPENCIQCNRCAYVCPHAVIRPVALTEEEVANAPEGLETIDMVGMPGLKFTMTVSAYDC 747

Query: 104 IYCGLCQEACP----VDAIVEGPNFEFAT 128
             CG C   CP      A+V     E A 
Sbjct: 748 TGCGSCANVCPGKKGEKALVMKNMEENAG 776


>gi|167757175|ref|ZP_02429302.1| hypothetical protein CLORAM_02725 [Clostridium ramosum DSM 1402]
 gi|167703350|gb|EDS17929.1| hypothetical protein CLORAM_02725 [Clostridium ramosum DSM 1402]
          Length = 202

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 12/58 (20%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            RCIAC  C+  CP Q I            +   +Y I    C++CGLC E CPV AI
Sbjct: 153 NRCIACDRCKRECPQQCI------------KSGSKYKIMQDHCLHCGLCYENCPVRAI 198


>gi|71908453|ref|YP_286040.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Dechloromonas
           aromatica RCB]
 gi|71848074|gb|AAZ47570.1| Pyruvate:ferredoxin (flavodoxin) oxidoreductase [Dechloromonas
           aromatica RCB]
          Length = 1212

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 22/82 (26%), Gaps = 17/82 (20%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQA-----------------ITIESGPRCHDGTRR 92
             AL+      + C  C  C  +CP  A                     +          
Sbjct: 687 NLALQIPVLETDLCTQCGKCVFVCPHAAIRVKAYPAELAAEAPASFKQMAIRSKDYPAGL 746

Query: 93  TVRYDIDMIKCIYCGLCQEACP 114
            + Y +    C  C LC + CP
Sbjct: 747 KMTYQVAPEDCTGCTLCVDVCP 768



 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 8/18 (44%), Positives = 8/18 (44%)

Query: 101 IKCIYCGLCQEACPVDAI 118
             C  CG C   CP  AI
Sbjct: 698 DLCTQCGKCVFVCPHAAI 715


>gi|20091691|ref|NP_617766.1| polyferredoxin [Methanosarcina acetivorans C2A]
 gi|19916865|gb|AAM06246.1| polyferredoxin [Methanosarcina acetivorans C2A]
          Length = 489

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 6/77 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIES--GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
             ++C  C++C  +CP  AIT ES       +   +   +     KC+ C LC+ ACP D
Sbjct: 129 DLDKCTFCRMCSNLCPVHAITFESVGEVPDEEQYPKYDAFVNINEKCLPCALCEGACPQD 188

Query: 117 AIVEGPNFEFATETRQE 133
           AI      EF    ++E
Sbjct: 189 AI----EVEFTFPKKEE 201



 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 4/87 (4%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E+  T         L    +   +C  C LC+ +CP +AI    G R  +  +   +  +
Sbjct: 237 EREPTPDNPVPFEQLLVDED---KCDYCVLCQDLCPEEAIK-VKGERPCEAPKVEGKVTV 292

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFE 125
           D +KC  C  CQ  CP +A+      E
Sbjct: 293 DDMKCTQCARCQAVCPYEAVDLQKPME 319



 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 1/77 (1%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L+      +RC  C +C  ICP +A+ +        G        +D+ KC +C +C   
Sbjct: 84  LKTLDYDYKRCNGCGICVDICPTKALELGPMHEIATGLDAPPVM-MDLDKCTFCRMCSNL 142

Query: 113 CPVDAIVEGPNFEFATE 129
           CPV AI      E   E
Sbjct: 143 CPVHAITFESVGEVPDE 159



 Score = 40.9 bits (94), Expect = 0.054,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E+C  C +C   C   A  +       D      +  +D  KC YC LCQ+ CP +AI
Sbjct: 216 DPEKCNFCGICARFC--DAFILLEREPTPDNPVPFEQLLVDEDKCDYCVLCQDLCPEEAI 273



 Score = 38.5 bits (88), Expect = 0.30,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 6/83 (7%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P+E         G+ +L      E     C+ C  +CP++   + + P           
Sbjct: 307 CPYEAVDLQKPMEGKLSLIELNLKECDPQGCRGCFNVCPSELWYVPTDPEDPRKIAFAED 366

Query: 96  YDIDMIKCIYCGLCQEACPVDAI 118
           +      C+YCG C +AC + AI
Sbjct: 367 F------CMYCGACVKACHLGAI 383



 Score = 37.8 bits (86), Expect = 0.48,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 30/81 (37%), Gaps = 5/81 (6%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE-----SGPRCHDGTRR 92
           FE     P          + N  E+C+ C LCE  CP  AI +E                
Sbjct: 150 FESVGEVPDEEQYPKYDAFVNINEKCLPCALCEGACPQDAIEVEFTFPKKEEIAPFKEGA 209

Query: 93  TVRYDIDMIKCIYCGLCQEAC 113
               +ID  KC +CG+C   C
Sbjct: 210 GGEIEIDPEKCNFCGICARFC 230


>gi|260061673|ref|YP_003194753.1| pyridine nucleotide-disulfide oxidoreductase domain-containing
           protein [Robiginitalea biformata HTCC2501]
 gi|88785805|gb|EAR16974.1| Pyridine nucleotide-disulphide oxidoreductase domain protein
           [Robiginitalea biformata HTCC2501]
          Length = 520

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 34/99 (34%), Gaps = 20/99 (20%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R     R   NG  +CI+C  C A C           +           +I    C+ CG
Sbjct: 429 RLFSRFRITTNG-GQCISCGNCSAYCEMGIDVRAYAQKGE---------NIVRASCVGCG 478

Query: 108 LCQEACP--VDAIVEGPNFEFATETRQELYYDKERLLNN 144
           +C   CP  V  +  GP        R+     +E LL N
Sbjct: 479 ICSAVCPRGVLKLENGP--------REGRINSREVLLGN 509


>gi|309775906|ref|ZP_07670899.1| sulfite reductase, subunit C [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916328|gb|EFP62075.1| sulfite reductase, subunit C [Erysipelotrichaceae bacterium 3_1_53]
          Length = 334

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 24/74 (32%), Gaps = 8/74 (10%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G   L +     + CI C  C   C + A  + S                    C+ CG 
Sbjct: 164 GIIGLTKPTYHSDLCIGCGSCVKACESHATRVLSLKNGKIEKDTC--------CCVGCGE 215

Query: 109 CQEACPVDAIVEGP 122
           C   CP +A+   P
Sbjct: 216 CTLVCPTNAMQRSP 229


>gi|303326306|ref|ZP_07356749.1| heterodisulfide reductase, A subunit [Desulfovibrio sp. 3_1_syn3]
 gi|302864222|gb|EFL87153.1| heterodisulfide reductase, A subunit [Desulfovibrio sp. 3_1_syn3]
          Length = 653

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 21/64 (32%), Gaps = 7/64 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              RC+ C  C   CP  AI            R   +  +    C  CGLC   CP  AI
Sbjct: 581 DIRRCVDCGKCIRCCPFGAIK-------EVEIRGEQKAQVIETVCQGCGLCTATCPQGAI 633

Query: 119 VEGP 122
               
Sbjct: 634 QLSH 637



 Score = 41.6 bits (96), Expect = 0.031,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 27/86 (31%), Gaps = 13/86 (15%)

Query: 57  PNGEERCIACKLCEAICPA----QAITIESGPR----CHDGTRRTVRYDIDMIKCI---- 104
                +C  C  C   CP+     A    +GP              +  I+   C     
Sbjct: 236 YVDWSKCTGCGACTEKCPSKKTPDAFNEFTGPTTAITIAFPQAIPKKAVINAAHCRQFVK 295

Query: 105 -YCGLCQEACPVDAIVEGPNFEFATE 129
             CG+C + CP  AI      E  TE
Sbjct: 296 GKCGVCAKVCPTGAIQYDMQDEIVTE 321



 Score = 33.5 bits (75), Expect = 9.5,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 3/39 (7%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            +D+ +C+ CG C   CP  AI      E   E + ++ 
Sbjct: 579 QVDIRRCVDCGKCIRCCPFGAI---KEVEIRGEQKAQVI 614


>gi|296273669|ref|YP_003656300.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Arcobacter nitrofigilis DSM 7299]
 gi|296097843|gb|ADG93793.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Arcobacter
           nitrofigilis DSM 7299]
          Length = 104

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               +RC AC LC ++CPA  + +        G++  +   I    CI CG C+ ACP  
Sbjct: 13  WIDAKRCKACDLCASVCPAGVLAMTYDSTSTLGSKVRI---ISKESCIGCGDCEYACPDF 69

Query: 117 AIVEGPNFEF 126
           AI      E+
Sbjct: 70  AISVATKHEY 79


>gi|296109703|ref|YP_003616652.1| CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit
           [Methanocaldococcus infernus ME]
 gi|295434517|gb|ADG13688.1| CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit
           [Methanocaldococcus infernus ME]
          Length = 758

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 27/94 (28%), Gaps = 7/94 (7%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
            +K       R +  L       + C  C  C  +CP  A+                   
Sbjct: 374 EQKKRIGLDLRDKQVL----ESIKECTECGWCNRVCP--AMLPIKEAMIEAKKGNLEPLS 427

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
               KC+ CG C E C    I     +  A + R
Sbjct: 428 NIYEKCVGCGKCVEFC-ERNIKLVDLYRVAAKER 460


>gi|261419625|ref|YP_003253307.1| dihydropyrimidine dehydrogenase [Geobacillus sp. Y412MC61]
 gi|319766442|ref|YP_004131943.1| dihydroorotate dehydrogenase [Geobacillus sp. Y412MC52]
 gi|261376082|gb|ACX78825.1| dihydroorotate dehydrogenase family protein [Geobacillus sp.
           Y412MC61]
 gi|317111308|gb|ADU93800.1| dihydroorotate dehydrogenase family protein [Geobacillus sp.
           Y412MC52]
          Length = 429

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 21/63 (33%), Gaps = 4/63 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117
             ERCI C  C   C   +          +G             C+ C LC   CPVD A
Sbjct: 338 HRERCIQCNKCYISCEDASHQCIERLVDENGKEYLKV---REEDCVGCNLCSIVCPVDGA 394

Query: 118 IVE 120
           I  
Sbjct: 395 IEM 397


>gi|169831496|ref|YP_001717478.1| hydrogenase, Fe-only [Candidatus Desulforudis audaxviator MP104C]
 gi|169638340|gb|ACA59846.1| hydrogenase, Fe-only [Candidatus Desulforudis audaxviator MP104C]
          Length = 590

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

Query: 59  GEERCIACKLCEAIC-PAQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115
             ++CI C+ C  +C   Q +           T     Y++ +    C++CG C   CPV
Sbjct: 145 EPQKCIYCRRCVTVCAEVQTVHAIGPQLRGFATVIAPPYNLPLGDSVCVHCGQCALVCPV 204

Query: 116 DAIVEGPN 123
            AI E  +
Sbjct: 205 GAIYERDD 212


>gi|222053362|ref|YP_002535724.1| Electron transfer flavoprotein alpha subunit [Geobacter sp. FRC-32]
 gi|221562651|gb|ACM18623.1| Electron transfer flavoprotein alpha subunit [Geobacter sp. FRC-32]
          Length = 449

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 23/87 (26%)

Query: 62  RCIACK-LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           +CIAC   CE+ CP  +I +  G              +   KCI C  C + CP  A+  
Sbjct: 21  KCIACGARCESSCPVNSIEMSDGGEPA----------VLAEKCIGCEKCIKVCPASALEM 70

Query: 121 GPNFEFATETRQELYYDKERLLNNGDR 147
                    + ++L      LL   D+
Sbjct: 71  -------FYSPEDL-----ELLKQWDK 85


>gi|56419957|ref|YP_147275.1| dihydropyrimidine dehydrogenase [Geobacillus kaustophilus HTA426]
 gi|56379799|dbj|BAD75707.1| dihydropyrimidine dehydrogenase [Geobacillus kaustophilus HTA426]
          Length = 429

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 21/63 (33%), Gaps = 4/63 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117
             ERCI C  C   C   +          +G             C+ C LC   CPVD A
Sbjct: 338 HRERCIQCNKCYISCEDASHQCIERLVDENGKEYLKV---REEDCVGCNLCSIVCPVDGA 394

Query: 118 IVE 120
           I  
Sbjct: 395 IEM 397


>gi|88799395|ref|ZP_01114973.1| dihydropyrimidine dehydrogenase [Reinekea sp. MED297]
 gi|88777934|gb|EAR09131.1| dihydropyrimidine dehydrogenase [Reinekea sp. MED297]
          Length = 424

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 4/76 (5%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   +        +++CI C  C   C   +          DGT R   +DI   +C+ 
Sbjct: 328 KYLNMNYKVVADIDQDKCIGCGRCYIGCEDTSHQAIELTPQADGTNR---FDIIEEECVG 384

Query: 106 CGLCQEACPV-DAIVE 120
           C LCQ  CPV D I  
Sbjct: 385 CNLCQITCPVEDCITM 400


>gi|327310272|ref|YP_004337169.1| putative ATPase RIL [Thermoproteus uzoniensis 768-20]
 gi|326946751|gb|AEA11857.1| putative ATPase RIL [Thermoproteus uzoniensis 768-20]
          Length = 588

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 24/73 (32%), Gaps = 2/73 (2%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +R      + C   K C   C       +SG         T +  I    CI CG+C   
Sbjct: 1   MRIAVVDRDSCDP-KKCGHECIKYCPVNKSGKVI-WIDENTGKAVISEKLCIGCGICVHK 58

Query: 113 CPVDAIVEGPNFE 125
           CP  AI      E
Sbjct: 59  CPFSAITITNLPE 71


>gi|308512759|gb|ADO33033.1| pixie [Biston betularia]
          Length = 608

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 3/68 (4%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP---N 123
           K C   C      +  G  C + T       I    CI CG+C + CP +AI       N
Sbjct: 27  KRCRQECKKSCPVVRMGKLCIEVTPNDKIATISEELCIGCGICVKKCPFEAITIINIPSN 86

Query: 124 FEFATETR 131
            E  T  R
Sbjct: 87  LEKHTTHR 94


>gi|284167378|ref|YP_003405656.1| formate dehydrogenase subunit alpha [Haloterrigena turkmenica DSM
           5511]
 gi|284017033|gb|ADB62983.1| formate dehydrogenase, alpha subunit [Haloterrigena turkmenica DSM
           5511]
          Length = 1110

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 4/68 (5%)

Query: 57  PNGEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
                +CI C  C   C        + IE          ++    +   +C+ CG C   
Sbjct: 207 QIDRNKCILCNRCVEGCNDVQVEGVLRIEGHGEDTRIGFQSDAETMADSECVSCGHCATV 266

Query: 113 CPVDAIVE 120
           CP  A+ E
Sbjct: 267 CPTGALTE 274


>gi|283853304|ref|ZP_06370553.1| hydrogenase, Fe-only [Desulfovibrio sp. FW1012B]
 gi|283571285|gb|EFC19296.1| hydrogenase, Fe-only [Desulfovibrio sp. FW1012B]
          Length = 421

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 30/79 (37%), Gaps = 9/79 (11%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L      E +CI C  C + CP  AI  E G              +    CI+CG C   
Sbjct: 25  LFFVQVDESKCIGCDACLSYCPTGAIVGEMGEPHKI---------VAPEACIHCGQCLTH 75

Query: 113 CPVDAIVEGPNFEFATETR 131
           CP  AI E  ++    E R
Sbjct: 76  CPQGAIYEEQSWVPEIEAR 94



 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 14/41 (34%)

Query: 78  ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              +  P       +     +D  KCI C  C   CP  AI
Sbjct: 10  FYEQRTPAPGADLDKLFFVQVDESKCIGCDACLSYCPTGAI 50


>gi|253681487|ref|ZP_04862284.1| nucleotide binding, CobQ/CobB/MinD/ParA family [Clostridium
           botulinum D str. 1873]
 gi|253561199|gb|EES90651.1| nucleotide binding, CobQ/CobB/MinD/ParA family [Clostridium
           botulinum D str. 1873]
          Length = 282

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 26/82 (31%), Gaps = 21/82 (25%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI+C  CE +C   AI+                  ID   C  CG C   CP +AI
Sbjct: 63  NYNLCISCGKCEKVCRFDAISNNK---------------IDSYSCEGCGTCIIVCPNNAI 107

Query: 119 VEGPNFEFATETRQELYYDKER 140
                     E    +Y  K  
Sbjct: 108 KLK------EEKSANMYITKTD 123



 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           +I+   CI CG C++ C  DAI       ++ E
Sbjct: 61  EINYNLCISCGKCEKVCRFDAISNNKIDSYSCE 93


>gi|237755886|ref|ZP_04584480.1| NADH dehydrogenase i chain g [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237691956|gb|EEP60970.1| NADH dehydrogenase i chain g [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 631

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 6/89 (6%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRRT 93
            PFEK      +  ++          RC+ C  C ++C    ++ +I    R  +     
Sbjct: 129 TPFEKIRPEEDWESDY----LEYVSNRCVLCMKCVSVCDNINKSHSITQIERGFEILISP 184

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
               +D   C  CGLC + CPV AI+  P
Sbjct: 185 ALKPMDTSTCEMCGLCVDICPVGAILFKP 213


>gi|258405237|ref|YP_003197979.1| NIL domain-containing protein [Desulfohalobium retbaense DSM 5692]
 gi|257797464|gb|ACV68401.1| NIL domain protein [Desulfohalobium retbaense DSM 5692]
          Length = 147

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           ++    E+ C+ C LC A+CP QA++++   R                KC  CG C   C
Sbjct: 83  QQISRDEDSCVHCGLCTALCPTQALSLDHETRHVLFDV---------EKCTACGACTRVC 133

Query: 114 PVDAI 118
           PV A+
Sbjct: 134 PVHAM 138


>gi|220925117|ref|YP_002500419.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium nodulans ORS 2060]
 gi|219949724|gb|ACL60116.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium nodulans ORS 2060]
          Length = 670

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 23/67 (34%), Gaps = 9/67 (13%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C  C  C   CP  A++ +                     C+ CGLC   CP D I   P
Sbjct: 524 CTLCHACVGACPTSALSDDPD---------RPVLTFSESLCVQCGLCAATCPEDVITLEP 574

Query: 123 NFEFATE 129
             +FA  
Sbjct: 575 RLDFAAW 581



 Score = 38.9 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 16/58 (27%), Gaps = 11/58 (18%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
             C  C  +CP  AI                   +D   C  CG C   CP  A    
Sbjct: 281 TGCTRCLEVCPTGAIAPAGD-----------HVAVDPFVCAGCGACASVCPTGAAAYT 327


>gi|206577903|ref|YP_002238214.1| electron transport complex, RnfABCDGE type, B subunit [Klebsiella
           pneumoniae 342]
 gi|288935202|ref|YP_003439261.1| electron transport complex, RnfABCDGE type subunit beta [Klebsiella
           variicola At-22]
 gi|290509260|ref|ZP_06548631.1| electron transport complex protein rnfB [Klebsiella sp. 1_1_55]
 gi|226735421|sp|B5XWQ0|RNFB_KLEP3 RecName: Full=Electron transport complex protein rnfB; AltName:
           Full=Nitrogen fixation protein rnfB
 gi|206566961|gb|ACI08737.1| electron transport complex, RnfABCDGE type, B subunit [Klebsiella
           pneumoniae 342]
 gi|288889911|gb|ADC58229.1| electron transport complex, RnfABCDGE type, B subunit [Klebsiella
           variicola At-22]
 gi|289778654|gb|EFD86651.1| electron transport complex protein rnfB [Klebsiella sp. 1_1_55]
          Length = 192

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 23/76 (30%), Gaps = 10/76 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   +             + +    C  C LC   CP   I
Sbjct: 113 DEPNCIGCTKCIQACPVDAIVGAT----------RAMHTVMNDLCTGCNLCVAPCPTQCI 162

Query: 119 VEGPNFEFATETRQEL 134
              P        + +L
Sbjct: 163 SLVPVATTPETWKWDL 178



 Score = 35.1 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C  C +ACPVDAI
Sbjct: 112 IDEPNCIGCTKCIQACPVDAI 132


>gi|187935492|ref|YP_001884833.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum
           B str. Eklund 17B]
 gi|187723645|gb|ACD24866.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum
           B str. Eklund 17B]
          Length = 362

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 12/62 (19%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           ++ CI C +C+  C   AI + +               ID  KC  CGLC   CP +A+ 
Sbjct: 311 QDVCIKCGICKTSCVYDAIEVSNE------------LIIDNKKCFGCGLCVTRCPQNALS 358

Query: 120 EG 121
             
Sbjct: 359 MQ 360


>gi|170767989|ref|ZP_02902442.1| anaerobic sulfite reductase subunit C [Escherichia albertii
           TW07627]
 gi|170123477|gb|EDS92408.1| anaerobic sulfite reductase subunit C [Escherichia albertii
           TW07627]
          Length = 176

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 21/63 (33%), Gaps = 8/63 (12%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCI C  C   C   A+   S                +   CI CG C  ACP  A   
Sbjct: 17  ERCIGCGACVKACAHHAVGCLSLKNGKA--------TKEESACIGCGECVLACPTLAWQR 68

Query: 121 GPN 123
            P 
Sbjct: 69  KPE 71


>gi|120599632|ref|YP_964206.1| FAD linked oxidase domain-containing protein [Shewanella sp.
           W3-18-1]
 gi|146292374|ref|YP_001182798.1| FAD linked oxidase domain-containing protein [Shewanella
           putrefaciens CN-32]
 gi|120559725|gb|ABM25652.1| FAD linked oxidase domain protein [Shewanella sp. W3-18-1]
 gi|145564064|gb|ABP74999.1| FAD linked oxidase domain protein [Shewanella putrefaciens CN-32]
 gi|319425674|gb|ADV53748.1| respiratory FAD-dependent D-lactate dehydrogenase, Dld [Shewanella
           putrefaciens 200]
          Length = 934

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 6/62 (9%)

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNG 145
                +     D  + KCI CG C++ CP  A+   P    AT  R+      ERL  +G
Sbjct: 525 HVKNIKPCPVVDDFVDKCIECGFCEKTCPTSALNFSPRQRIATL-RE-----IERLEQSG 578

Query: 146 DR 147
           D+
Sbjct: 579 DK 580



 Score = 35.5 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 26/75 (34%), Gaps = 16/75 (21%)

Query: 57  PNGEERCIACKLCEAICPAQAITI----------------ESGPRCHDGTRRTVRYDIDM 100
            +  ++CI C  CE  CP  A+                  +SG +      R       +
Sbjct: 536 DDFVDKCIECGFCEKTCPTSALNFSPRQRIATLREIERLEQSGDKAAAAEMRAAAKYDVV 595

Query: 101 IKCIYCGLCQEACPV 115
             C  C LC  ACPV
Sbjct: 596 DTCAACQLCTIACPV 610


>gi|332305736|ref|YP_004433587.1| electron transport complex, RnfABCDGE type, B subunit [Glaciecola
           agarilytica 4H-3-7+YE-5]
 gi|332173065|gb|AEE22319.1| electron transport complex, RnfABCDGE type, B subunit [Glaciecola
           agarilytica 4H-3-7+YE-5]
          Length = 188

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 29/84 (34%), Gaps = 10/84 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E  S       E   +     E+ CI C  C   CP  AI   +             + +
Sbjct: 94  EATSLDAAHGTEDIKKVAYIREDECIGCTKCIQACPVDAILGAAKQ----------MHTV 143

Query: 99  DMIKCIYCGLCQEACPVDAIVEGP 122
              +C  C LC + CPVD I   P
Sbjct: 144 ISDECTGCDLCVDPCPVDCIDMIP 167


>gi|325958028|ref|YP_004289494.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
 gi|325329460|gb|ADZ08522.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
          Length = 453

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 37/95 (38%), Gaps = 10/95 (10%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93
           I+ P      +   +           ++ C+ CKLC  ICP  AI   S           
Sbjct: 369 IHCPVSAIPRTATLKKSIKEGFTFVQDKMCMKCKLCTKICPEDAINENSEGNIV------ 422

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
               +D  KCIYCG C  ACP  AI+    FE + 
Sbjct: 423 ----VDDSKCIYCGACSNACPAKAIILEREFEVSE 453



 Score = 40.9 bits (94), Expect = 0.059,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 11/74 (14%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R    ++      E CI C +C  +CP  AIT+           R    D+DM KCI C 
Sbjct: 317 RKLKNIKWDGTVSEDCITCGICSELCPKGAITL-----------RRGSIDVDMDKCILCE 365

Query: 108 LCQEACPVDAIVEG 121
            C   CPV AI   
Sbjct: 366 KCAIHCPVSAIPRT 379



 Score = 37.0 bits (84), Expect = 0.79,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 3/65 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++CI C+ C   CP  AI   +  +       T   D     C+ C LC + CP DAI
Sbjct: 357 DMDKCILCEKCAIHCPVSAIPRTATLKKSIKEGFTFVQDKM---CMKCKLCTKICPEDAI 413

Query: 119 VEGPN 123
            E   
Sbjct: 414 NENSE 418



 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 26/62 (41%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           A++     + +C  C  C + CP  A+  E               +  ++ C+ CGLC E
Sbjct: 190 AIKDGVIDDTKCTLCLKCVSECPNSAMYTEDFKLHIRKPEEGETIEGSIVSCLNCGLCAE 249

Query: 112 AC 113
           AC
Sbjct: 250 AC 251



 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 27/90 (30%), Gaps = 11/90 (12%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT----------VRYDIDMIKC 103
                  E C  C  CE  CP  AI ++          R               ID  KC
Sbjct: 142 TNICTDPENCTLCGRCEYYCPTNAIIVDVDSEGLCTECRICEDVCPVGAIKDGVIDDTKC 201

Query: 104 IYCGLCQEACPVDAIVEGPNFEFATETRQE 133
             C  C   CP  A+    +F+      +E
Sbjct: 202 TLCLKCVSECPNSAMY-TEDFKLHIRKPEE 230



 Score = 35.5 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 10/72 (13%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            A+R        CI C  C+  CP  AI             +   + +D  KC  CG+C+
Sbjct: 21  EAIRIIDGKAFSCITCGACKDACPNSAIFKN----------KFGGFVVDRAKCNACGVCE 70

Query: 111 EACPVDAIVEGP 122
             CPV+ I    
Sbjct: 71  MTCPVNNIKIED 82



 Score = 35.1 bits (79), Expect = 3.0,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 27/74 (36%), Gaps = 14/74 (18%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103
                 ++    +     +C AC +CE  CP   I IE G                   C
Sbjct: 44  PNSAIFKNKFGGFVVDRAKCNACGVCEMTCPVNNIKIEDGVVKGI--------------C 89

Query: 104 IYCGLCQEACPVDA 117
             CG+C +ACPV A
Sbjct: 90  ARCGICVDACPVKA 103



 Score = 34.7 bits (78), Expect = 4.5,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 19/59 (32%), Gaps = 9/59 (15%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            C++C  C  +C           +                 CI CG+C E CP  AI  
Sbjct: 300 FCVSCGKCVQVCDVNKARKLKNIKWDGT---------VSEDCITCGICSELCPKGAITL 349


>gi|325972135|ref|YP_004248326.1| NADH dehydrogenase (quinone) [Spirochaeta sp. Buddy]
 gi|324027373|gb|ADY14132.1| NADH dehydrogenase (quinone) [Spirochaeta sp. Buddy]
          Length = 595

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 10/71 (14%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             L  Y    E+CI C  C   CP  AI+ E          R   + ID   CI CG+C 
Sbjct: 535 KKLISYTINAEKCIGCTACARKCPVAAISGE----------RKQVHVIDQSICIKCGVCM 584

Query: 111 EACPVDAIVEG 121
           E C   A+   
Sbjct: 585 ETCKFGAVEIH 595



 Score = 40.9 bits (94), Expect = 0.054,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 18/49 (36%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           +         I          ++ + Y I+  KCI C  C   CPV AI
Sbjct: 514 KHFKEEYLAHIVDKTCPSGKCKKLISYTINAEKCIGCTACARKCPVAAI 562


>gi|308271987|emb|CBX28595.1| hypothetical protein N47_G39190 [uncultured Desulfobacterium sp.]
          Length = 1029

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 11/67 (16%)

Query: 59   GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              ++C AC +C  +CP     I +               ID  KC  CG+C   CP  AI
Sbjct: 957  DSKKCAACLICVRVCPFGVPFINADGYSE----------IDPSKCHGCGVCASECPAKAI 1006

Query: 119  VEGPNFE 125
                 FE
Sbjct: 1007 QLM-QFE 1012


>gi|283851796|ref|ZP_06369074.1| Cobyrinic acid ac-diamide synthase [Desulfovibrio sp. FW1012B]
 gi|283572916|gb|EFC20898.1| Cobyrinic acid ac-diamide synthase [Desulfovibrio sp. FW1012B]
          Length = 299

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 21/69 (30%), Gaps = 11/69 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L         C  C  C  +C   AIT+                 + +  C  CG C   
Sbjct: 61  LEVPVVDAAVCTRCGACRELCQFGAITVMGDTPL-----------VFVDMCHGCGGCLAV 109

Query: 113 CPVDAIVEG 121
           CP  AI  G
Sbjct: 110 CPAGAITPG 118


>gi|322420762|ref|YP_004199985.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Geobacter sp. M18]
 gi|320127149|gb|ADW14709.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Geobacter sp. M18]
          Length = 1196

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 16/93 (17%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP--------------- 84
             +TS   +   A+      E+ CI C +C  +CP  AI +++ P               
Sbjct: 673 PTATSQYEKRNIAVEIPVWNEKLCIQCAICSFVCPHAAIRVKAYPSEALAGAPAGFKCAD 732

Query: 85  -RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            +  +     V + +    C  CG C   CPV 
Sbjct: 733 SKIAELKEHKVTFQVAPEDCTGCGACAHNCPVR 765


>gi|238749375|ref|ZP_04610880.1| Pyruvate-flavodoxin oxidoreductase [Yersinia rohdei ATCC 43380]
 gi|238712030|gb|EEQ04243.1| Pyruvate-flavodoxin oxidoreductase [Yersinia rohdei ATCC 43380]
          Length = 1177

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/142 (18%), Positives = 35/142 (24%), Gaps = 33/142 (23%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A        + C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSAFPPDGTWPVGTTQWEKRNIAENIPLWQPDLCTQCNHCVAAC 699

Query: 74  PAQAITIESGP----------------RCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                +  D   +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPEALSGAPDSLQSLDVKARDMRGQKYILQVAPEDCTGCNLCYEVCPAKD 759

Query: 116 ------DAIVEGPNFE-FATET 130
                  AI   P  E  A E 
Sbjct: 760 RQDPTIRAINMKPRLEHLAAEK 781


>gi|227825030|ref|ZP_03989862.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226905529|gb|EEH91447.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 375

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 24/60 (40%), Gaps = 11/60 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  C  CK C   C + AIT E G              ID  +C  CG C  AC  DAI
Sbjct: 194 DESLCRDCKRCAKECGSDAITYEKGKAH-----------IDKTRCTGCGRCIGACSFDAI 242


>gi|159040877|ref|YP_001540129.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Caldivirga maquilingensis IC-167]
 gi|157919712|gb|ABW01139.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Caldivirga
           maquilingensis IC-167]
          Length = 121

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 10/84 (11%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           +        G     R  + ++ CI C  C ++CP  A  ++   +              
Sbjct: 4   RSEIPTTPEGLRKYMRVIDDQDICIGCGACVSVCPTNAWELDENGKARLIWDW------- 56

Query: 100 MIKCIYCGLCQEACPVDAIVEGPN 123
              CI    C   CPV+ I + P 
Sbjct: 57  ---CIDDFSCIPVCPVNCIWKTPE 77


>gi|94269897|ref|ZP_01291593.1| Ferredoxin:FAD-dependent pyridine nucleotide-disulphide
           oxidoreductase:4Fe-4S ferredoxin, iron-sulfur
           binding:FAD dependent oxidoreductase:Molybdopterin
           oxidoreductase Fe4S4 region [delta proteobacterium
           MLMS-1]
 gi|93451027|gb|EAT01992.1| Ferredoxin:FAD-dependent pyridine nucleotide-disulphide
           oxidoreductase:4Fe-4S ferredoxin, iron-sulfur
           binding:FAD dependent oxidoreductase:Molybdopterin
           oxidoreductase Fe4S4 region [delta proteobacterium
           MLMS-1]
          Length = 826

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 1/81 (1%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           T+PR+  +           +CI C  C   C  +A+ I +G     G  + +     M  
Sbjct: 606 TTPRYARQEEHPTISVDLNKCIYCHKCANSCEYRALEITAGSFDEQGRAQDLSLT-FMEH 664

Query: 103 CIYCGLCQEACPVDAIVEGPN 123
           C+ CG C + C   A+ +   
Sbjct: 665 CVSCGKCVDNCSTGALNKKDQ 685



 Score = 35.1 bits (79), Expect = 3.2,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 11/96 (11%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKL-----CEAICPAQAITIESGPRCHDGTR 91
           P          R     +   +  ERC++C       C+    A A  ++        T 
Sbjct: 549 PERAIQDFNEVRLGFTEQMAKSEAERCLSCGCTAFDRCDLKEQAIAHGVDPNKTGMGTTP 608

Query: 92  RTVRYDIDM------IKCIYCGLCQEACPVDAIVEG 121
           R  R +          KCIYC  C  +C   A+   
Sbjct: 609 RYARQEEHPTISVDLNKCIYCHKCANSCEYRALEIT 644


>gi|78185928|ref|YP_373971.1| putative glutamate synthase (NADPH) small subunit [Chlorobium
           luteolum DSM 273]
 gi|78165830|gb|ABB22928.1| iron-sulfur cluster-binding protein, GltD family [Chlorobium
           luteolum DSM 273]
          Length = 578

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 6/59 (10%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           C  CK C + CP +A+          G +    Y     KC+ C LC   CP   I  G
Sbjct: 521 CFDCKQCVSFCPQEAVLRHRD--NPSGEKVETDYV----KCVGCHLCSLVCPSGYIQMG 573


>gi|57640225|ref|YP_182703.1| pyruvate-formate lyase-activating enzyme [Thermococcus kodakarensis
           KOD1]
 gi|57158549|dbj|BAD84479.1| pyruvate-formate lyase-activating enzyme [Thermococcus kodakarensis
           KOD1]
          Length = 306

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 10/60 (16%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            +CI C  C  +CP +AIT +                ID  KC  CG+C E CP  A+  
Sbjct: 56  YKCIHCHTCVNVCPLRAITFDENE----------VQHIDREKCDVCGVCAEFCPTSALKL 105



 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/57 (22%), Positives = 18/57 (31%), Gaps = 1/57 (1%)

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
                       +G     +      KCI+C  C   CP+ AI    N E     R+
Sbjct: 31  GCPLRCWWCHNPEGISPRPQLMYLEYKCIHCHTCVNVCPLRAITFDEN-EVQHIDRE 86


>gi|86140247|ref|ZP_01058808.1| iron-sulfur cluster-binding protein [Roseobacter sp. MED193]
 gi|85823050|gb|EAQ43264.1| iron-sulfur cluster-binding protein [Roseobacter sp. MED193]
          Length = 657

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 31/103 (30%), Gaps = 14/103 (13%)

Query: 25  RYFFKAKTTINYPFEKG-STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG 83
           R   +       P  K      +      L      ++ C  C  C ++CP+ A+     
Sbjct: 474 RQIARQAAMALQPEAKHLPLPAQAPYGAVLV----DQDSCTLCLSCVSLCPSGALGDNPD 529

Query: 84  PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
                      +       C+ CG+C   CP DAI   P    
Sbjct: 530 ---------LPQLRFQEEACLQCGICANTCPEDAISFEPRLNL 563



 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 25/83 (30%), Gaps = 18/83 (21%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           C  C   CP  AI+                  ID + C  CG C   CP  AI     ++
Sbjct: 286 CSKCLDHCPTSAISSAGD-----------HVSIDPMICAGCGACAALCPSGAIT----YD 330

Query: 126 FATET---RQELYYDKERLLNNG 145
                   R+     K  L   G
Sbjct: 331 APATDAQFRRIQVLAKAYLEAGG 353


>gi|325578318|ref|ZP_08148453.1| electron transport complex protein RnfB [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325160054|gb|EGC72183.1| electron transport complex protein RnfB [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 194

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 20/64 (31%), Gaps = 10/64 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C  C   CP  AI   +             + I    C  C LC   CP D
Sbjct: 103 FIDENMCIGCTKCIQACPVDAIIGTNK----------AMHTIIADLCTGCELCVAPCPTD 152

Query: 117 AIVE 120
            I  
Sbjct: 153 CISM 156



 Score = 35.8 bits (81), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/25 (52%), Positives = 15/25 (60%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           ID   CI C  C +ACPVDAI+   
Sbjct: 104 IDENMCIGCTKCIQACPVDAIIGTN 128


>gi|297623162|ref|YP_003704596.1| dihydroorotate dehydrogenase family protein [Truepera radiovictrix
           DSM 17093]
 gi|297164342|gb|ADI14053.1| dihydroorotate dehydrogenase family protein [Truepera radiovictrix
           DSM 17093]
          Length = 451

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 21/89 (23%), Gaps = 8/89 (8%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE-------SGPRCHDGTRR 92
              +                  +CI C LC   C   A                      
Sbjct: 322 PRYSPFNQLDLSYKVVARIDPAKCIHCNLCFVACDEGAHQCIDLTVDGVKIDPATYAGPA 381

Query: 93  TVRYDIDMIKCIYCGLCQEACPVD-AIVE 120
             +  +    C+ C LC   CPVD  I  
Sbjct: 382 KTQPVVREDDCVGCNLCSLVCPVDGCITM 410


>gi|296386938|ref|ZP_06876437.1| dihydropyrimidine dehydrogenase [Pseudomonas aeruginosa PAb1]
          Length = 424

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 4/66 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117
            ++ CI C  C   C   +    +     DGT     Y++   +C+ C LCQ  CPV + 
Sbjct: 341 DQDACIGCGRCHIACEDTSHQAIASLPRADGTH---HYEVIDAECVGCNLCQITCPVENC 397

Query: 118 IVEGPN 123
           I   P 
Sbjct: 398 IEMVPQ 403


>gi|295105925|emb|CBL03468.1| hypothetical protein [Gordonibacter pamelaeae 7-10-1-b]
          Length = 304

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 24/73 (32%), Gaps = 7/73 (9%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G   +         CI C  C   C A    ++      D   R          C+ CG 
Sbjct: 219 GRMGVVNVRYDRTACIHCDACRKACLADPSILDPVLAGDDTCVR-------AGDCMACGS 271

Query: 109 CQEACPVDAIVEG 121
           C +ACP  A+  G
Sbjct: 272 CVDACPARALSLG 284


>gi|229525628|ref|ZP_04415033.1| electron transport complex protein RnfC [Vibrio cholerae bv.
           albensis VL426]
 gi|229339209|gb|EEO04226.1| electron transport complex protein RnfC [Vibrio cholerae bv.
           albensis VL426]
          Length = 841

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 29/109 (26%), Gaps = 20/109 (18%)

Query: 13  LKEFVGA---FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69
           L   +         L +          P  K +        + L    N    CI C  C
Sbjct: 360 LPRLIMGGPMMGFTLPHA-------QVPITKTANCILAPTRNELTSSDNEMA-CIRCGQC 411

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMI----KCIYCGLCQEACP 114
              CP   +     P+      +   +D         CI CG C   CP
Sbjct: 412 AEACPVSLL-----PQQLQWHAKAEEFDKCEELNLKDCIECGACAYVCP 455



 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/13 (76%), Positives = 10/13 (76%)

Query: 103 CIYCGLCQEACPV 115
           CI CG C EACPV
Sbjct: 405 CIRCGQCAEACPV 417


>gi|225175250|ref|ZP_03729246.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Dethiobacter alkaliphilus AHT 1]
 gi|225169426|gb|EEG78224.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Dethiobacter alkaliphilus AHT 1]
          Length = 696

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 27/87 (31%), Gaps = 10/87 (11%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
            E+ +     R           +E C  C  C   CP     I+              + 
Sbjct: 468 DERAALCESRRCLDCAAGAECIDEICAVCLTCLRTCPYGVPHIDDEGN----------FT 517

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNF 124
           I   +C  CGLC   CP  AI    ++
Sbjct: 518 IRNEECQACGLCVGICPASAIRFRNHY 544


>gi|225175926|ref|ZP_03729918.1| hydrogenase, Fe-only [Dethiobacter alkaliphilus AHT 1]
 gi|225168514|gb|EEG77316.1| hydrogenase, Fe-only [Dethiobacter alkaliphilus AHT 1]
          Length = 574

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 3/65 (4%)

Query: 59  GEERCIACKLCEAIC-PAQAITIESGPRCHDGTRRTVR--YDIDMIKCIYCGLCQEACPV 115
             ++CI C  C  +C   QA+           T       Y+++   C+ CG C   CPV
Sbjct: 144 EPDKCIYCGRCVRVCSDVQAVNALDFFNRGFDTEVGPPPGYNLNDSVCVQCGQCATTCPV 203

Query: 116 DAIVE 120
            AI E
Sbjct: 204 GAIYE 208



 Score = 35.1 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 12/66 (18%)

Query: 58  NGEERCIACK---LCEAICPAQAITIESGPRCHDGTRRTVRYD-------IDMIKCIYCG 107
           N    C  CK    CE      A+ +      + G +R +  D        +  KCIYCG
Sbjct: 95  NHPLECPTCKRNLNCE--LQQLALDMGVSEVHYQGRQRELPMDTSSPALVREPDKCIYCG 152

Query: 108 LCQEAC 113
            C   C
Sbjct: 153 RCVRVC 158


>gi|167377560|ref|XP_001734446.1| periplasmic [Fe] hydrogenase large subunit [Entamoeba dispar
           SAW760]
 gi|165904061|gb|EDR29423.1| periplasmic [Fe] hydrogenase large subunit, putative [Entamoeba
           dispar SAW760]
          Length = 469

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 29/103 (28%), Gaps = 10/103 (9%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI----------ESGPRCHDG 89
               S    G+           +C+ C +C   C    +             +       
Sbjct: 2   PPKPSHTITGQDHNNAIEIDWSKCMGCGMCAMRCNYGVLHKSGPKIPPTVTPNRENVTQP 61

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
                R  ID   C+ CG C  AC   AI    + E   E ++
Sbjct: 62  NDDKTRVLIDESDCVGCGQCSSACNFGAIKPVSHIERVFEAKK 104


>gi|229580876|ref|YP_002839275.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus Y.N.15.51]
 gi|228011592|gb|ACP47353.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus Y.N.15.51]
 gi|323475824|gb|ADX86430.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus REY15A]
 gi|323478603|gb|ADX83841.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus islandicus HVE10/4]
          Length = 87

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 27/75 (36%), Gaps = 11/75 (14%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G   + +      +CI CK+C   CP   I   +G              +D   C  CG+
Sbjct: 23  GAWRIVKPVVDYNKCIGCKVCFMFCPESTIVPSNGKV-----------RVDYEYCKGCGV 71

Query: 109 CQEACPVDAIVEGPN 123
           C   CPV AI     
Sbjct: 72  CANVCPVKAISMVNE 86


>gi|152982452|ref|YP_001353663.1| iron-sulfur binding protein [Janthinobacterium sp. Marseille]
 gi|151282529|gb|ABR90939.1| iron-sulfur binding protein [Janthinobacterium sp. Marseille]
          Length = 699

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 9/79 (11%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++ C  C  C   CP  A+T  +         +          C+ CGLC++ CP +AI
Sbjct: 564 NKDSCTLCMSCVGACPESALTDNANMPQLRFIEKN---------CVQCGLCEKTCPENAI 614

Query: 119 VEGPNFEFATETRQELYYD 137
              P        +Q +  +
Sbjct: 615 TLAPRLLLTDAAKQAVVLN 633



 Score = 40.5 bits (93), Expect = 0.076,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 14/31 (45%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
           ID+  C  C  C + CP +AI      + + 
Sbjct: 196 IDLEACTRCNACVDVCPENAIDLTYQIDLSK 226



 Score = 39.3 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 11/55 (20%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C  C  +C A+A++                  ++   C+ CG C   CP  A+
Sbjct: 322 VGCTACIDVCSAEAVSHHGDQ-----------IKVNPNLCVGCGACTTVCPSGAL 365



 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 31/85 (36%), Gaps = 22/85 (25%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P   E C  C  C  +CP  AI               + Y ID+ KC     C +AC   
Sbjct: 195 PIDLEACTRCNACVDVCPENAID--------------LTYQIDLSKCKSHRDCVKACGTI 240

Query: 117 -AIVEGPNFEFATETRQ---ELYYD 137
            AI    +F  +   R    +L +D
Sbjct: 241 GAI----DFARSVTQRSGDFDLIFD 261


>gi|160878249|ref|YP_001557217.1| NADH dehydrogenase (quinone) [Clostridium phytofermentans ISDg]
 gi|160426915|gb|ABX40478.1| NADH dehydrogenase (quinone) [Clostridium phytofermentans ISDg]
          Length = 628

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 15/98 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            ++Y F+ +   +   +K           AL       E C  C  C  +CP  AI+ E 
Sbjct: 545 TIKY-FRDEYIAHVVDKKCPAGQC----KALMTLKIIPELCKGCTKCARLCPVSAISGEV 599

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
                          ID  KCI CG C+++C   AI+E
Sbjct: 600 KKLHS----------IDTKKCIKCGACKDSCGFKAIIE 627


>gi|326317529|ref|YP_004235201.1| RnfABCDGE type electron transport complex subunit B [Acidovorax
           avenae subsp. avenae ATCC 19860]
 gi|323374365|gb|ADX46634.1| electron transport complex, RnfABCDGE type, B subunit [Acidovorax
           avenae subsp. avenae ATCC 19860]
          Length = 244

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 21/64 (32%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C LC   CP  AI                 + +    C  C LC   CPVD I
Sbjct: 90  DELACIGCTLCIKACPTDAILGT----------HKRMHTVIEAHCTGCELCIPVCPVDCI 139

Query: 119 VEGP 122
               
Sbjct: 140 AMEN 143



 Score = 37.4 bits (85), Expect = 0.61,   Method: Composition-based stats.
 Identities = 13/25 (52%), Positives = 16/25 (64%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           ID + CI C LC +ACP DAI+   
Sbjct: 89  IDELACIGCTLCIKACPTDAILGTH 113


>gi|255264310|ref|ZP_05343652.1| dihydroorotate dehydrogenase family protein [Thalassiobium sp.
           R2A62]
 gi|255106645|gb|EET49319.1| dihydroorotate dehydrogenase family protein [Thalassiobium sp.
           R2A62]
          Length = 434

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 8/76 (10%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI+C  C A C       E              + +   +C+ 
Sbjct: 330 QYLNLNYVAKAKIDQDACISCGRCYAAC-------EDTSHQAIAMSPDRVFTVIDEECVA 382

Query: 106 CGLCQEACPV-DAIVE 120
           C LC + CPV D I  
Sbjct: 383 CNLCVDVCPVEDCISM 398



 Score = 33.9 bits (76), Expect = 8.5,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 17/51 (33%), Gaps = 3/51 (5%)

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP---VDAIVEGPN 123
            A    +    +       +  ID   CI CG C  AC      AI   P+
Sbjct: 320 GAAVPNTTDWQYLNLNYVAKAKIDQDACISCGRCYAACEDTSHQAIAMSPD 370


>gi|268679822|ref|YP_003304253.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurospirillum deleyianum DSM 6946]
 gi|268617853|gb|ACZ12218.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurospirillum deleyianum DSM 6946]
          Length = 139

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 4/65 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C+ C  C  +CPA AI IE   +          + +    C  CG C   CP  A+
Sbjct: 6   ENTLCVLCNTCLFVCPANAICIEKTAQTESMYD----FTLWHNSCTLCGNCIYYCPSGAL 61

Query: 119 VEGPN 123
                
Sbjct: 62  RMSDE 66


>gi|170761427|ref|YP_001785345.1| iron-sulfur cluster-binding protein [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169408416|gb|ACA56827.1| iron-sulfur cluster-binding protein [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 387

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           E+CI C  C  +CP +   I+   +             +M KCI C  CQE CP  AI
Sbjct: 319 EKCIGCNRCAEVCPEKPYVIDMIKKGDKKIPVW-----NMKKCIRCFCCQELCPKGAI 371


>gi|281358774|ref|ZP_06245249.1| putative PAS/PAC sensor protein [Victivallis vadensis ATCC BAA-548]
 gi|281314729|gb|EFA98767.1| putative PAS/PAC sensor protein [Victivallis vadensis ATCC BAA-548]
          Length = 582

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 11/56 (19%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
            C  C  C   CP +AI +  G              +    C+ CG C E CPV A
Sbjct: 13  ECQDCYKCVRHCPVKAIRVRDGHAA-----------VIPELCVACGKCVEVCPVKA 57


>gi|148642366|ref|YP_001272879.1| polyferredoxin, iron-sulfur binding [Methanobrevibacter smithii
           ATCC 35061]
 gi|261351019|ref|ZP_05976436.1| putative 4Fe-4S binding domain protein [Methanobrevibacter smithii
           DSM 2374]
 gi|148551383|gb|ABQ86511.1| polyferredoxin, iron-sulfur binding [Methanobrevibacter smithii
           ATCC 35061]
 gi|288860359|gb|EFC92657.1| putative 4Fe-4S binding domain protein [Methanobrevibacter smithii
           DSM 2374]
          Length = 274

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++ CI C  C   C   ++ ++   R       T   +I+  +C+ C LC+E CPV+AI
Sbjct: 183 NKKLCIGCGACVQFCENDSVKLD---RTIGPIVHTKNLEINQDECVNCYLCEENCPVEAI 239

Query: 119 VEGPN 123
                
Sbjct: 240 WLDEE 244



 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 10/63 (15%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            RCI C +C   CP  AI     P       +          C+ C +C + CPV AI  
Sbjct: 48  PRCIRCNMCVDQCPVDAI----EPANIFKIAKITH------DCVKCEICVQTCPVSAIKL 97

Query: 121 GPN 123
             N
Sbjct: 98  IDN 100



 Score = 37.4 bits (85), Expect = 0.77,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 11/70 (15%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           +     ++ C+ C LCE  CP +AI ++                ++  KCI C  C   C
Sbjct: 215 KNLEINQDECVNCYLCEENCPVEAIWLDEEKVV-----------LNNDKCIRCINCTSHC 263

Query: 114 PVDAIVEGPN 123
           PV A+     
Sbjct: 264 PVGALNFVEI 273



 Score = 35.1 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 102 KCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           +CI C +C + CPVDAI     F+ A  T  
Sbjct: 49  RCIRCNMCVDQCPVDAIEPANIFKIAKITHD 79


>gi|118591778|ref|ZP_01549174.1| iron-sulfur cluster-binding protein [Stappia aggregata IAM 12614]
 gi|118435771|gb|EAV42416.1| iron-sulfur cluster-binding protein [Stappia aggregata IAM 12614]
          Length = 654

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 9/82 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++ C  C  C ++CP+ A+                +       C+ CG+C   CP  A+
Sbjct: 502 DQDACTLCLSCVSLCPSGALKENPDA---------PQLRFQEDACLQCGICTTICPEKAL 552

Query: 119 VEGPNFEFATETRQELYYDKER 140
              P  + + +  +     +E 
Sbjct: 553 SLDPRLDLSDDALRARILKEEE 574



 Score = 38.2 bits (87), Expect = 0.45,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 11/55 (20%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             C  C  +CP  AIT +                +D + C  CG C   CP  AI
Sbjct: 280 TGCTRCLDLCPTGAITPDGD-----------HVSVDTMVCAGCGSCSAVCPSGAI 323


>gi|84490227|ref|YP_448459.1| ferredoxin [Methanosphaera stadtmanae DSM 3091]
 gi|84373546|gb|ABC57816.1| EhbL [Methanosphaera stadtmanae DSM 3091]
          Length = 175

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCH--DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            CI C  C  +CP +AI +         DG  +T   +ID I C++C  C + CPV A+ 
Sbjct: 49  ECIGCGGCSNVCPTKAIIMVPVEPVEIADGIVKTAIPEIDEINCVHCYQCHDFCPVYALF 108



 Score = 38.5 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 10/20 (50%), Positives = 11/20 (55%)

Query: 103 CIYCGLCQEACPVDAIVEGP 122
           CI CG C   CP  AI+  P
Sbjct: 50  CIGCGGCSNVCPTKAIIMVP 69


>gi|88705801|ref|ZP_01103510.1| iron-sulfur cluster binding protein [Congregibacter litoralis KT71]
 gi|88699872|gb|EAQ96982.1| iron-sulfur cluster binding protein [Congregibacter litoralis KT71]
          Length = 473

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/115 (18%), Positives = 30/115 (26%), Gaps = 14/115 (12%)

Query: 29  KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88
           +    ++ P E             L        +CI C  C   CP              
Sbjct: 281 RRPGDVDGPLETHFVLLDNERSDILASDYAEMLQCIRCGACLNHCPVYMSAGGHAYGWVY 340

Query: 89  GTRRTVRYD----------IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
                              +    C  CG C+E CP  AI   P  +   + R+E
Sbjct: 341 PGPMGSVLTPLLTSLEDGGLLPDACTACGRCEEVCP-AAI---PIPDLLRDLREE 391


>gi|330502371|ref|YP_004379240.1| electron transport complex protein RnfB [Pseudomonas mendocina
           NK-01]
 gi|328916657|gb|AEB57488.1| electron transport complex protein RnfB [Pseudomonas mendocina
           NK-01]
          Length = 191

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 27/83 (32%), Gaps = 10/83 (12%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
             +        GE         E  CI C  C   CP  AI   +             + 
Sbjct: 89  DVEAEPLDAVEGEKPQMVAFIREAECIGCTKCIQACPVDAIVGAA----------RQMHT 138

Query: 98  IDMIKCIYCGLCQEACPVDAIVE 120
           + + +C  C LC E CPVD I  
Sbjct: 139 VIVSECTGCDLCVEPCPVDCIDM 161


>gi|328955433|ref|YP_004372766.1| hydrogenase, Fe-only [Coriobacterium glomerans PW2]
 gi|328455757|gb|AEB06951.1| hydrogenase, Fe-only [Coriobacterium glomerans PW2]
          Length = 585

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 32/99 (32%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
             PF+K      +     L R  +   +C+ C        A  +   +    H       
Sbjct: 120 QLPFDKHLAGEHWNLSFPLIRNNDKCIKCMRCIQVCDKVQATGVWDITNRAGHTMVNTVG 179

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
              I+   C  CG C   CPV A+ E  + E   +   +
Sbjct: 180 GKPIEETGCSLCGQCITHCPVGALRERDDTEQVFDALGD 218


>gi|320101170|ref|YP_004176762.1| 4Fe-4S ferredoxin, iron-sulfur-binding domain-containing protein
           [Desulfurococcus mucosus DSM 2162]
 gi|319753522|gb|ADV65280.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Desulfurococcus mucosus DSM 2162]
          Length = 160

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 32/86 (37%), Gaps = 10/86 (11%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
            EKG   PR R            E  I C +C + CP  A++          ++      
Sbjct: 15  EEKGLLPPRERLAKGPVAVLECPEE-IPCNICVSACPFNAVS---------KSKIYEIPK 64

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPN 123
           +D  KCI CG+C   CP  AI     
Sbjct: 65  LDPEKCIGCGVCVAKCPGLAIFVVDI 90


>gi|254785634|ref|YP_003073063.1| electron transport complex, RnfABCDGE type, C subunit
           [Teredinibacter turnerae T7901]
 gi|237685331|gb|ACR12595.1| electron transport complex, RnfABCDGE type, C subunit
           [Teredinibacter turnerae T7901]
          Length = 505

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 25/72 (34%), Gaps = 2/72 (2%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            +    CI C  C   CP   + +E   R           D  +  CI CG C   CP  
Sbjct: 367 RSEASPCIRCASCVEACPMGLLPLEMAAR-SRADDFEGADDYGLRDCILCGSCAYVCPSH 425

Query: 117 AIVEGPNFEFAT 128
            I     F++A 
Sbjct: 426 -IPLVQYFQYAK 436



 Score = 37.4 bits (85), Expect = 0.68,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 4/42 (9%)

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
           +      +   CI C  C EACP+  +      E A  +R +
Sbjct: 362 KHEVPRSEASPCIRCASCVEACPMGLLPL----EMAARSRAD 399


>gi|256822167|ref|YP_003146130.1| RnfABCDGE type electron transport complex subunit B [Kangiella
           koreensis DSM 16069]
 gi|256795706|gb|ACV26362.1| electron transport complex, RnfABCDGE type, B subunit [Kangiella
           koreensis DSM 16069]
          Length = 195

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 28/82 (34%), Gaps = 10/82 (12%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E          E   R     E+ CI C  C   CP  AI               + + +
Sbjct: 90  EVIPLDEERGEEQPPRVAYIREDECIGCTKCIQACPVDAILGAPK----------LMHTV 139

Query: 99  DMIKCIYCGLCQEACPVDAIVE 120
            + +C  C LC E CPVD I  
Sbjct: 140 IIDECTGCDLCVEPCPVDCIDM 161


>gi|226356948|ref|YP_002786688.1| polyferredoxin [Deinococcus deserti VCD115]
 gi|226318938|gb|ACO46934.1| putative polyferredoxin [Deinococcus deserti VCD115]
          Length = 341

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 16/104 (15%)

Query: 36  YPFEKGSTSPRFRGE----------HALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
            P E+     ++R                  P  +E+CI C +C  +CP +AIT +  P 
Sbjct: 231 VPEERTPQEWKWRSRALSPAPPETAGVHWPAPLVDEKCIDCPVCANVCPTEAITRDLQPD 290

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
                   VR  +D+  C  C  C  +CP  AI     +  A  
Sbjct: 291 GG------VRLLLDLSACTGCMACLHSCPPGAIYAQDEWLPAAF 328



 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 9/56 (16%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           C  C   CP QA+ +                 ID   C  CGLC + CP  A+  G
Sbjct: 34  CDACHTTCPHQAVNLGPLGAS---------IQIDPDLCTGCGLCVQVCPTGALEYG 80


>gi|225027278|ref|ZP_03716470.1| hypothetical protein EUBHAL_01534 [Eubacterium hallii DSM 3353]
 gi|224955431|gb|EEG36640.1| hypothetical protein EUBHAL_01534 [Eubacterium hallii DSM 3353]
          Length = 263

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 29/89 (32%), Gaps = 11/89 (12%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
                  P+           E            CI CK+C  +C A AIT+E+       
Sbjct: 185 KSLIELVPYAAPHKVQCSSKEFGKAVKEVCSAGCIGCKMCTRVCEADAITVENNIA---- 240

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                   ID  KC  CG C E CP   I
Sbjct: 241 -------KIDYSKCTGCGKCAEKCPAKII 262



 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 11/60 (18%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C     C  +C   AI + +G              +D  KC+ CG C   CP   I   P
Sbjct: 144 CTGFGSCVKVCDFDAIHVINGVAV-----------VDKEKCVACGKCVATCPKSLIELVP 192



 Score = 35.5 bits (80), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 5/78 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-----DIDMIKCIYCGLCQEAC 113
            +E+C+AC  C A CP   I +      H     +  +     ++    CI C +C   C
Sbjct: 169 DKEKCVACGKCVATCPKSLIELVPYAAPHKVQCSSKEFGKAVKEVCSAGCIGCKMCTRVC 228

Query: 114 PVDAIVEGPNFEFATETR 131
             DAI    N      ++
Sbjct: 229 EADAITVENNIAKIDYSK 246


>gi|94266820|ref|ZP_01290483.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
 gi|93452521|gb|EAT03113.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium
           MLMS-1]
          Length = 345

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 16/64 (25%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP--VDAIV 119
            CI C  C  +CP +AI+ ++               I   KCI CG C+  CP  VDA+ 
Sbjct: 108 DCIKCGKCVHVCPTEAISEDN--------------RIAREKCIGCGNCEAICPPKVDAVR 153

Query: 120 EGPN 123
              N
Sbjct: 154 YEHN 157



 Score = 40.1 bits (92), Expect = 0.091,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 13/37 (35%)

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                   VR       CI CG C   CP +AI E  
Sbjct: 92  VGMPGDHHVRKAFITADCIKCGKCVHVCPTEAISEDN 128


>gi|89902038|ref|YP_524509.1| formate dehydrogenase subunit alpha [Rhodoferax ferrireducens T118]
 gi|89346775|gb|ABD70978.1| formate dehydrogenase, alpha subunit [Rhodoferax ferrireducens
           T118]
          Length = 942

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 5/65 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114
             + CI C  C   C  +    +     H G +  + +D    +    C+ CG C +ACP
Sbjct: 165 NLDACIQCTRCVRACR-EVQVNDVIGYAHRGAQSQIVFDLNDAMGDSSCVACGECVQACP 223

Query: 115 VDAIV 119
             A++
Sbjct: 224 TGALM 228


>gi|18977042|ref|NP_578399.1| putative ATPase RIL [Pyrococcus furiosus DSM 3638]
 gi|18892677|gb|AAL80794.1| RNase l inhibitor [Pyrococcus furiosus DSM 3638]
          Length = 590

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 21/73 (28%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +R      ++C   K    +C         G           +  I    C  CG+C   
Sbjct: 1   MRIAVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYKPIIQEASCTGCGICVHK 60

Query: 113 CPVDAIVEGPNFE 125
           CP  AI      E
Sbjct: 61  CPFKAISIVNLPE 73


>gi|76802482|ref|YP_327490.1| ferredoxin II [Natronomonas pharaonis DSM 2160]
 gi|76558347|emb|CAI49937.1| ferredoxin II [Natronomonas pharaonis DSM 2160]
          Length = 109

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 2/69 (2%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                  + C+    C   CP         P   +  ++    D    +CI C LC + C
Sbjct: 37  THVAVDLDICVGDGACLEDCPVDVFEWIDTPDHPESEQKVTPAD--EDQCIDCMLCVDVC 94

Query: 114 PVDAIVEGP 122
           PVDAI   P
Sbjct: 95  PVDAIDVDP 103


>gi|75759831|ref|ZP_00739907.1| Formate dehydrogenase alpha chain [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74492689|gb|EAO55829.1| Formate dehydrogenase alpha chain [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 280

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+E          + +   Y     +CIAC  C  +C    +             R +
Sbjct: 133 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 190

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAIVE 120
             +   I+   C+ CG C   CP +A++E
Sbjct: 191 WDNGVSINDSSCVSCGQCVTVCPCNALME 219



 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102
           R   N    C  C      C+       + IE     ++              Y  D  +
Sbjct: 99  RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 158

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 159 CIACGQCVEVC 169


>gi|330506428|ref|YP_004382856.1| glutamate synthase [Methanosaeta concilii GP-6]
 gi|328927236|gb|AEB67038.1| glutamate synthase [Methanosaeta concilii GP-6]
          Length = 504

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 14/107 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E +C  C+ CE  C     T +           + R   D  KC+ C  C   CP DAI
Sbjct: 14  DEAKCGQCRGCERQCAFGTHTYDP---------VSDRLISDDNKCVGCQRCAIFCPRDAI 64

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWES--EIVRNIVTDSPYR 163
           V  PN    +  R    + +E+L +   + E+   I+     D P+R
Sbjct: 65  VVRPN---PSFYRPNASWSREKLEDVKKQAETGGVILTGCGNDKPFR 108


>gi|309388355|gb|ADO76235.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Halanaerobium praevalens DSM 2228]
          Length = 98

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 10/63 (15%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ++CI C LC  +C          P      +   R + D   C  C +C E CPVDAI  
Sbjct: 43  DKCIQCLLCAPVC----------PDSSIPVKDGQRLEFDYDHCKGCAICAEVCPVDAIEM 92

Query: 121 GPN 123
            P 
Sbjct: 93  VPE 95


>gi|298675376|ref|YP_003727126.1| glutamate synthase [Methanohalobium evestigatum Z-7303]
 gi|298288364|gb|ADI74330.1| Glutamate synthase (NADPH) [Methanohalobium evestigatum Z-7303]
          Length = 503

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 28/81 (34%), Gaps = 14/81 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              RC  C +C   C   A+    G    D             KC+ C  C   CP +AI
Sbjct: 13  DSARCRKCGICVNNCSFGALEFRDGRVIPD-----------DSKCVACYRCVSKCPDNAI 61

Query: 119 VEGPNFEFATETRQELYYDKE 139
               N+++A   R    +  E
Sbjct: 62  TIS-NYQWA--NRGNANWTPE 79


>gi|288574136|ref|ZP_06392493.1| Cobyrinic acid ac-diamide synthase [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288569877|gb|EFC91434.1| Cobyrinic acid ac-diamide synthase [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 281

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 10/69 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L      E+ C  C LC   C   A+               +   ++   C  CG+C   
Sbjct: 57  LPMPVFDEKLCKRCGLCAKECRFNALVQFGD----------LMPRLNEGLCHGCGVCSMV 106

Query: 113 CPVDAIVEG 121
           CP  AI EG
Sbjct: 107 CPHGAITEG 115


>gi|289581689|ref|YP_003480155.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Natrialba
           magadii ATCC 43099]
 gi|289531242|gb|ADD05593.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Natrialba
           magadii ATCC 43099]
          Length = 159

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 2/65 (3%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                  + CIA   C   CP         P   +   +         +CI C LC + C
Sbjct: 89  THVAVDFDLCIADGACLEDCPVDVFEWVETPGHPESEEKADPT--HEAQCIDCMLCVDVC 146

Query: 114 PVDAI 118
           PVDAI
Sbjct: 147 PVDAI 151


>gi|197302545|ref|ZP_03167600.1| hypothetical protein RUMLAC_01273 [Ruminococcus lactaris ATCC
           29176]
 gi|197298443|gb|EDY32988.1| hypothetical protein RUMLAC_01273 [Ruminococcus lactaris ATCC
           29176]
          Length = 383

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 10/88 (11%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +      E +C  C  C  +CP  AIT +     +      V   ID  KCI C  C + 
Sbjct: 1   MIAQICEESKCTGCLACMNLCPCGAITCQEREDGN------VIPQIDPEKCIECHRCVQG 54

Query: 113 CPVDAIVEGPN----FEFATETRQELYY 136
           CP + + E       +    + R+E  Y
Sbjct: 55  CPENHVKEKHEPRQCYATWQKDRKERKY 82


>gi|220909415|ref|YP_002484726.1| bidirectional hydrogenase complex protein HoxU [Cyanothece sp. PCC
           7425]
 gi|219866026|gb|ACL46365.1| NADH dehydrogenase (ubiquinone) [Cyanothece sp. PCC 7425]
          Length = 238

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 23/68 (33%), Gaps = 4/68 (5%)

Query: 56  YPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLCQE 111
           +     RCI C  C  +C     A   +   R       +        +  C  CG C +
Sbjct: 141 FTIDHNRCILCTRCVRVCDEIEGAHVWDVAQRGAACYIVSGLNQPWGEVEACTSCGKCVD 200

Query: 112 ACPVDAIV 119
           ACP  AI 
Sbjct: 201 ACPTGAIF 208


>gi|169830328|ref|YP_001716310.1| molybdopterin oxidoreductase [Candidatus Desulforudis audaxviator
           MP104C]
 gi|169637172|gb|ACA58678.1| molybdopterin oxidoreductase [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 998

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 23/83 (27%), Gaps = 3/83 (3%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-- 96
           E     P    +           +CI C +C   C   A                  +  
Sbjct: 128 ELRPVKPGKPLDDTHPWIVRNHNKCILCGICVRTCREIAQVNAIDFAFRGRATTISTFGN 187

Query: 97  -DIDMIKCIYCGLCQEACPVDAI 118
             +    C+ CG C   CPV A+
Sbjct: 188 KPLHESNCVSCGECVARCPVGAL 210



 Score = 37.4 bits (85), Expect = 0.60,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 31/90 (34%), Gaps = 3/90 (3%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T  Y    G+ +P    + +   +     RC+AC +C   C           +  D  R
Sbjct: 367 YTGVYQEMAGTPAPFAEVDESNPYFVLDRSRCVACGICLRTCRQVNGADALEFKRVDNHR 426

Query: 92  RTVRYD---IDMIKCIYCGLCQEACPVDAI 118
             V      +    C  CG C   CPV A+
Sbjct: 427 VVVPRQGGSLAESACESCGECVARCPVGAL 456


>gi|319427482|gb|ADV55556.1| molybdopterin-binding oxidoreductase [Shewanella putrefaciens 200]
          Length = 1424

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 22/75 (29%), Gaps = 15/75 (20%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK---------------C 103
              RCI+C  C   C  Q+                   D+   +               C
Sbjct: 647 DANRCISCGKCVDACNQQSGHCVIQFAYDSYQALPQTEDLTQERRAPRVGFSASMADSQC 706

Query: 104 IYCGLCQEACPVDAI 118
           + CG C + CP  A+
Sbjct: 707 VQCGNCVQVCPTGAL 721



 Score = 33.9 bits (76), Expect = 6.6,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 4/48 (8%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
            +C+ C  C  +CP  A+      R  D T       I    C YCG+
Sbjct: 704 SQCVQCGNCVQVCPTGALVDARDKRQGDKTSLKTASTI----CTYCGV 747


>gi|14521566|ref|NP_127042.1| 2-ketoisovalerate ferredoxin oxidoreductase subunit delta
           [Pyrococcus abyssi GE5]
 gi|14195412|sp|Q9UYZ0|VORD_PYRAB RecName: Full=Ketoisovalerate oxidoreductase subunit vorD;
           Short=VOR; AltName: Full=2-oxoisovalerate ferredoxin
           reductase subunit delta; AltName: Full=2-oxoisovalerate
           oxidoreductase delta chain
 gi|5458785|emb|CAB50272.1| vorD ketoisovalerate oxidoreductase subunit vorD (EC 1.-.-.-)
           [Pyrococcus abyssi GE5]
          Length = 105

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 32/97 (32%), Gaps = 13/97 (13%)

Query: 30  AKTTINYPFEKGSTS---PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC 86
            K+   YP    +       F G+         E +C+ C +C   CP  AI I+     
Sbjct: 17  PKSVDEYPEAPITLGTTLVNFTGDWRTFMPVIDESKCVKCYICWKFCPEPAIYIKEDG-- 74

Query: 87  HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                      ID   C  CG+C   CP  AI     
Sbjct: 75  --------FVAIDYDYCKGCGICANECPTKAITMVRE 103


>gi|120597724|ref|YP_962298.1| formate dehydrogenase subunit alpha [Shewanella sp. W3-18-1]
 gi|120557817|gb|ABM23744.1| formate dehydrogenase, alpha subunit [Shewanella sp. W3-18-1]
          Length = 1424

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 22/75 (29%), Gaps = 15/75 (20%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK---------------C 103
              RCI+C  C   C  Q+                   D+   +               C
Sbjct: 647 DANRCISCGKCVDACNQQSGHCVIQFAYDSYQALPQTEDLTQERRAPRVGFSASMADSQC 706

Query: 104 IYCGLCQEACPVDAI 118
           + CG C + CP  A+
Sbjct: 707 VQCGNCVQVCPTGAL 721



 Score = 33.9 bits (76), Expect = 6.6,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 4/48 (8%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
            +C+ C  C  +CP  A+      R  D T       I    C YCG+
Sbjct: 704 SQCVQCGNCVQVCPTGALVDARDKRQGDKTSLKTASTI----CTYCGV 747


>gi|330508939|ref|YP_004385367.1| CoB--CoM heterodisulfide reductase subunit A [Methanosaeta concilii
           GP-6]
 gi|328929747|gb|AEB69549.1| CoB--CoM heterodisulfide reductase subunit A [Methanosaeta concilii
           GP-6]
          Length = 811

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 12/64 (18%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               + CI CKLC  +CP +AI+++S                    C  CG C  ACPVD
Sbjct: 573 YVDPDLCIKCKLCVDVCPQKAISVKSPAYVD------------EAACKGCGSCAAACPVD 620

Query: 117 AIVE 120
           AI  
Sbjct: 621 AIKM 624



 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 23/82 (28%), Gaps = 8/82 (9%)

Query: 52  ALRRYPNGEERCIAC-KLCEAICPAQAITIE-------SGPRCHDGTRRTVRYDIDMIKC 103
             R        C  C   C  +CP +                        +   +D   C
Sbjct: 232 VHRARYVDPVLCKGCINECADVCPVEVPNEYDFGIGKRKAIYVPYPQAVPLSACVDPKAC 291

Query: 104 IYCGLCQEACPVDAIVEGPNFE 125
           I CG C E+CP  A+      E
Sbjct: 292 IGCGRCVESCPTQAVKLDQVVE 313


>gi|315922949|ref|ZP_07919189.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Bacteroides sp. D2]
 gi|313696824|gb|EFS33659.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Bacteroides sp. D2]
          Length = 403

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 11/75 (14%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ++C  C  C  +C   AI         +        +ID  KC+ CG+C++ CP      
Sbjct: 11  KQCTGCFACIDVCNKNAI------NIVEHYDGHRYVEIDKSKCVGCGMCEQICP-----I 59

Query: 121 GPNFEFATETRQELY 135
             NFE+      + Y
Sbjct: 60  VSNFEYQKSEYSDFY 74


>gi|313125962|ref|YP_004036232.1| NADH:ubiquinone oxidoreductase chain i-like protein
           [Halogeometricum borinquense DSM 11551]
 gi|312292327|gb|ADQ66787.1| NADH:ubiquinone oxidoreductase chain I-like protein
           [Halogeometricum borinquense DSM 11551]
          Length = 114

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 27/82 (32%), Gaps = 2/82 (2%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100
           G   P  +            + CI    C   CP    +    P   +   +        
Sbjct: 29  GPVDPPEKLGIHGTHVAVDFDICIGDGACLEDCPVDVFSWVDTPGHPESEVKVQPAR--E 86

Query: 101 IKCIYCGLCQEACPVDAIVEGP 122
            +CI C LC + CPVDAI   P
Sbjct: 87  DQCIDCMLCVDVCPVDAIDVDP 108


>gi|308273555|emb|CBX30157.1| Pyruvate-flavodoxin oxidoreductase [uncultured Desulfobacterium
           sp.]
          Length = 1179

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/115 (17%), Positives = 31/115 (26%), Gaps = 20/115 (17%)

Query: 29  KAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAICPAQ---------- 76
           K   ++  P        S   +   A+       E CI C  C  +CP            
Sbjct: 651 KLPVSVFEPDGIFPVATSQYEKRGVAINVPEWIAENCIQCNQCSFVCPHASILPVLATDD 710

Query: 77  ------AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP--VDAIVEGPN 123
                 A          +      R  ++ + C  CG C + CP    A+     
Sbjct: 711 ELKNAPASFETKPAVGKELKGYQFRIQVNTLDCQGCGNCADICPSKKKALEMKHI 765


>gi|300854657|ref|YP_003779641.1| NADH dehydrogenase [Clostridium ljungdahlii DSM 13528]
 gi|300434772|gb|ADK14539.1| NADH dehydrogenase [Clostridium ljungdahlii DSM 13528]
          Length = 626

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 10/67 (14%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           AL +Y    E+CI C  C  +CP  AI+ E              + ID  KCI CG C  
Sbjct: 567 ALLKYNINSEKCIGCTACTKVCPKGAISGEIKK----------SHVIDKSKCINCGACSS 616

Query: 112 ACPVDAI 118
            C   AI
Sbjct: 617 TCKFSAI 623



 Score = 42.0 bits (97), Expect = 0.031,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 9/72 (12%)

Query: 70  EAICPAQAITIESGPRCHDG-TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
                 + +      RC  G     ++Y+I+  KCI C  C + CP  AI        + 
Sbjct: 544 MKFFWDEYVAHVKDKRCPAGVCTALLKYNINSEKCIGCTACTKVCPKGAI--------SG 595

Query: 129 ETRQELYYDKER 140
           E ++    DK +
Sbjct: 596 EIKKSHVIDKSK 607


>gi|260888766|ref|ZP_05900029.1| putative 4Fe-4S binding domain protein [Selenomonas sputigena ATCC
           35185]
 gi|330839840|ref|YP_004414420.1| pyridoxamine 5'-phosphate oxidase-related FMN-binding protein
           [Selenomonas sputigena ATCC 35185]
 gi|260861519|gb|EEX76019.1| putative 4Fe-4S binding domain protein [Selenomonas sputigena ATCC
           35185]
 gi|329747604|gb|AEC00961.1| pyridoxamine 5'-phosphate oxidase-related FMN-binding protein
           [Selenomonas sputigena ATCC 35185]
          Length = 209

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 12/58 (20%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           E CI C  C A+CP Q I                 Y I    C++CGLC E+CPV+AI
Sbjct: 156 EDCIGCGTCAAVCPQQCIAEGE------------PYKIAAAHCLHCGLCFESCPVEAI 201



 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/27 (40%), Positives = 13/27 (48%)

Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFA 127
             CI CG C   CP   I EG  ++ A
Sbjct: 156 EDCIGCGTCAAVCPQQCIAEGEPYKIA 182


>gi|257125909|ref|YP_003164023.1| sulfite reductase, subunit C [Leptotrichia buccalis C-1013-b]
 gi|257049848|gb|ACV39032.1| sulfite reductase, subunit C [Leptotrichia buccalis C-1013-b]
          Length = 324

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 8/87 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +         G   + +    E +C++C +CE  C                + +  +
Sbjct: 147 CPNDCQKVRMHDFGIIGMAKPELDESKCVSCGMCERKC--------KKLSTGAISYKNYK 198

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGP 122
              D  +CI CG C   CP  A    P
Sbjct: 199 PVRDHQRCIGCGECVLNCPTGAWTRSP 225


>gi|257065212|ref|YP_003144884.1| formate dehydrogenase, alpha subunit, archaeal-type [Slackia
           heliotrinireducens DSM 20476]
 gi|256792865|gb|ACV23535.1| formate dehydrogenase, alpha subunit, archaeal-type [Slackia
           heliotrinireducens DSM 20476]
          Length = 911

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 32/111 (28%), Gaps = 14/111 (12%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           L+       +    F         P +  +  P       L   PN    CI C+ C   
Sbjct: 119 LQNICRELGVTESAF--------APEKPKARKPILDSNPFLSFDPN---LCIQCQRCVGA 167

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIK---CIYCGLCQEACPVDAIVE 120
           C  QA              + +       K   C  CG C +ACP  A+  
Sbjct: 168 CNNQAHNHTLQTGKKGLRTKILAPFGPDWKATTCESCGNCAQACPTGALTL 218


>gi|225572045|ref|ZP_03780909.1| hypothetical protein RUMHYD_00339 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040480|gb|EEG50726.1| hypothetical protein RUMHYD_00339 [Blautia hydrogenotrophica DSM
           10507]
          Length = 623

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 10/68 (14%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           ALR++    E C  C  C   CP  AIT            R   Y I+   CI CG C++
Sbjct: 563 ALRQFHINPEFCKGCGKCAKNCPTGAIT----------GARKHPYTINNDLCIKCGNCKD 612

Query: 112 ACPVDAIV 119
            C  DA+ 
Sbjct: 613 NCAFDAVY 620



 Score = 38.9 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 15/40 (37%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            I +            ++ I+   C  CG C + CP  AI
Sbjct: 550 HIINKKCRAKVCTALRQFHINPEFCKGCGKCAKNCPTGAI 589


>gi|222444431|ref|ZP_03606946.1| hypothetical protein METSMIALI_00042 [Methanobrevibacter smithii
           DSM 2375]
 gi|222433996|gb|EEE41161.1| hypothetical protein METSMIALI_00042 [Methanobrevibacter smithii
           DSM 2375]
          Length = 274

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++ CI C  C   C   ++ ++   R       T   +I+  +C+ C LC+E CPV+AI
Sbjct: 183 NKKLCIGCGACVQFCENDSVKLD---RTIGPIVHTKNLEINQDECVNCYLCEENCPVEAI 239

Query: 119 VEGPN 123
                
Sbjct: 240 WLDEE 244



 Score = 40.1 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 10/63 (15%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            RCI C +C   CP  AI     P       +          C+ C +C + CPV AI  
Sbjct: 48  PRCIRCNMCVDQCPVDAI----EPANIFKIAKITH------DCVKCEICVQTCPVSAIKL 97

Query: 121 GPN 123
             N
Sbjct: 98  IDN 100



 Score = 37.0 bits (84), Expect = 0.80,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 11/70 (15%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           +     ++ C+ C LCE  CP +AI ++                ++  KCI C  C   C
Sbjct: 215 KNLEINQDECVNCYLCEENCPVEAIWLDEEKVV-----------LNNDKCIRCINCTSHC 263

Query: 114 PVDAIVEGPN 123
           PV A+     
Sbjct: 264 PVGALNFVEI 273



 Score = 35.1 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 102 KCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           +CI C +C + CPVDAI     F+ A  T  
Sbjct: 49  RCIRCNMCVDQCPVDAIEPANIFKIAKITHD 79


>gi|297203645|ref|ZP_06921042.1| formate dehydrogenase, alpha subunit [Streptomyces sviceus ATCC
           29083]
 gi|197717221|gb|EDY61255.1| formate dehydrogenase, alpha subunit [Streptomyces sviceus ATCC
           29083]
          Length = 938

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 25/81 (30%), Gaps = 3/81 (3%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CIAC  C   C     T      G                  +C+ CG C +
Sbjct: 159 YFDFDPAKCIACSRCVRACGEVQGTFALTIEGRGFDSKVSPGAGETFMDSECVSCGACVQ 218

Query: 112 ACPVDAIVEGPNFEFATETRQ 132
           ACP   + E    E    TR 
Sbjct: 219 ACPTSTLQERSVVELGMPTRS 239


>gi|170759048|ref|YP_001786345.1| anaerobic sulfite reductase, subunit C [Clostridium botulinum A3
           str. Loch Maree]
 gi|169406037|gb|ACA54448.1| anaerobic sulfite reductase, subunit C [Clostridium botulinum A3
           str. Loch Maree]
          Length = 321

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/88 (20%), Positives = 26/88 (29%), Gaps = 8/88 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +         G   +      + RC+ C+ C   C  +A              +  +
Sbjct: 145 CPNDCIKARMHDFGILGMTEPQYDKYRCVGCQACVNNCKKRA--------TGALRFQNFK 196

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPN 123
              D  KCI CG C   CP  A      
Sbjct: 197 VIRDHEKCIGCGECIGKCPTGAWTRSKE 224


>gi|168217465|ref|ZP_02643090.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium
           perfringens NCTC 8239]
 gi|182380464|gb|EDT77943.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium
           perfringens NCTC 8239]
          Length = 273

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 11/70 (15%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
               N    CI CKLCE  CP++AI +E+               ID  KC  CG+C   C
Sbjct: 210 IVNQNCSVGCIGCKLCEKNCPSKAIRVENNLAI-----------IDYEKCTSCGICVSKC 258

Query: 114 PVDAIVEGPN 123
           P  AI    N
Sbjct: 259 PKKAINLREN 268



 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 5/78 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCIYCGLCQEAC 113
              +C+ACK C + CP   I I    +    +        +      + CI C LC++ C
Sbjct: 170 DSSKCVACKACVSACPQNLIDIIKENQKVIVSCNSNDSGKIVNQNCSVGCIGCKLCEKNC 229

Query: 114 PVDAIVEGPNFEFATETR 131
           P  AI    N       +
Sbjct: 230 PSKAIRVENNLAIIDYEK 247


>gi|94264133|ref|ZP_01287931.1| Ferredoxin:FAD-dependent pyridine nucleotide-disulphide
           oxidoreductase:4Fe-4S ferredoxin, iron-sulfur
           binding:FAD dependent oxidoreductase:Molybdopterin
           oxidoreductase Fe4S4 region [delta proteobacterium
           MLMS-1]
 gi|93455469|gb|EAT05663.1| Ferredoxin:FAD-dependent pyridine nucleotide-disulphide
           oxidoreductase:4Fe-4S ferredoxin, iron-sulfur
           binding:FAD dependent oxidoreductase:Molybdopterin
           oxidoreductase Fe4S4 region [delta proteobacterium
           MLMS-1]
          Length = 826

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 1/81 (1%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           T+PR+  +           +CI C  C   C  +A+ I +G     G  + +     M  
Sbjct: 606 TTPRYARQEEHPTISVDLNKCIYCHKCANSCEYRALEITAGSFDEQGRAQDLSLT-FMEH 664

Query: 103 CIYCGLCQEACPVDAIVEGPN 123
           C+ CG C + C   A+ +   
Sbjct: 665 CVSCGKCVDNCSTGALNKKDQ 685



 Score = 35.1 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 11/96 (11%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKL-----CEAICPAQAITIESGPRCHDGTR 91
           P          R     +   +  ERC++C       C+    A A  ++        T 
Sbjct: 549 PERAIQDFNEVRLGFTEQMAKSEAERCLSCGCTAFDRCDLKEQAIAHGVDPNKTGMGTTP 608

Query: 92  RTVRYDIDM------IKCIYCGLCQEACPVDAIVEG 121
           R  R +          KCIYC  C  +C   A+   
Sbjct: 609 RYARQEEHPTISVDLNKCIYCHKCANSCEYRALEIT 644


>gi|51246903|ref|YP_066787.1| electron transfer flavoprotein, alpha subunit [Desulfotalea
           psychrophila LSv54]
 gi|50877940|emb|CAG37780.1| probable electron transfer flavoprotein, alpha subunit
           [Desulfotalea psychrophila LSv54]
          Length = 436

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 14/69 (20%)

Query: 62  RCIACK-LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA--I 118
           +CI+C   CE+ CP   IT+                 I+  KCI C  C +ACP +A  I
Sbjct: 18  KCISCGGRCESSCPVACITMSDAGEP----------QINTAKCIGCKKCVKACPGEALEI 67

Query: 119 VEGPNFEFA 127
              P  E A
Sbjct: 68  FFTPE-ELA 75


>gi|146294139|ref|YP_001184563.1| formate dehydrogenase subunit alpha [Shewanella putrefaciens CN-32]
 gi|145565829|gb|ABP76764.1| formate dehydrogenase, alpha subunit [Shewanella putrefaciens
           CN-32]
          Length = 1424

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 22/75 (29%), Gaps = 15/75 (20%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK---------------C 103
              RCI+C  C   C  Q+                   D+   +               C
Sbjct: 647 DANRCISCGKCVDACNQQSGHCVIQFAYDSYQALPQTEDLTQERRAPRVGFSASMADSQC 706

Query: 104 IYCGLCQEACPVDAI 118
           + CG C + CP  A+
Sbjct: 707 VQCGNCVQVCPTGAL 721



 Score = 33.9 bits (76), Expect = 6.6,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 4/48 (8%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
            +C+ C  C  +CP  A+      R  D T       I    C YCG+
Sbjct: 704 SQCVQCGNCVQVCPTGALVDARDKRQGDKTSLKTASTI----CTYCGV 747


>gi|71653204|ref|XP_815243.1| ribonuclease L inhibitor [Trypanosoma cruzi strain CL Brener]
 gi|70880285|gb|EAN93392.1| ribonuclease L inhibitor, putative [Trypanosoma cruzi]
          Length = 647

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 21/54 (38%)

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C   C         G  C +  +++V   I    CI CGLC + CP  AI    
Sbjct: 30  CSLECSKCCPVNLQGKLCIEVQKKSVISKISEELCIGCGLCVKKCPYGAIQIIN 83


>gi|325971420|ref|YP_004247611.1| hydrogenase, Fe-only [Spirochaeta sp. Buddy]
 gi|324026658|gb|ADY13417.1| hydrogenase, Fe-only [Spirochaeta sp. Buddy]
          Length = 594

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 33/91 (36%), Gaps = 6/91 (6%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTR 91
           T  +P  K           +L R PN    CI C  C  +C   Q+++          T+
Sbjct: 124 TSRFPRTKKKFEELDVTSASLVRDPN---ACILCNRCVEVCSSMQSVSAIQLVGRGLKTK 180

Query: 92  RTVRYDIDMIK--CIYCGLCQEACPVDAIVE 120
               YD  +    C  CG C   CP  AI E
Sbjct: 181 VATFYDQGLGNSVCTNCGQCSLVCPTAAITE 211


>gi|266620820|ref|ZP_06113755.1| putative polyferredoxin [Clostridium hathewayi DSM 13479]
 gi|288867559|gb|EFC99857.1| putative polyferredoxin [Clostridium hathewayi DSM 13479]
          Length = 251

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 32/98 (32%), Gaps = 12/98 (12%)

Query: 25  RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84
           + F +   T       G  +  F       +     + CI+C  C  ICP   I +E+  
Sbjct: 151 KAFSRPAVTFQDRMNSGIVNNLFYPVFVHAKKFYAADTCISCGKCAKICPLNNIRMENRK 210

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                        +    C +C  C   CP +AI  G 
Sbjct: 211 P------------VWGKNCTHCMACICHCPTEAIEYGK 236


>gi|302879566|ref|YP_003848130.1| electron transport complex, RnfABCDGE type, B subunit [Gallionella
           capsiferriformans ES-2]
 gi|302582355|gb|ADL56366.1| electron transport complex, RnfABCDGE type, B subunit [Gallionella
           capsiferriformans ES-2]
          Length = 182

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 24/65 (36%), Gaps = 10/65 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C LC   CP  AI   +             + I   +C  C LC   CPVD I
Sbjct: 108 DESTCIGCTLCIQACPVDAIVGAAKQ----------MHTIIAAECTGCELCLAPCPVDCI 157

Query: 119 VEGPN 123
              P 
Sbjct: 158 SMEPI 162



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/21 (66%), Positives = 15/21 (71%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C LC +ACPVDAI
Sbjct: 107 IDESTCIGCTLCIQACPVDAI 127


>gi|237735737|ref|ZP_04566218.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229381482|gb|EEO31573.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 203

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 12/58 (20%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            RCIAC  C+  CP Q I            +   +Y I    C++CGLC E CPV AI
Sbjct: 154 NRCIACDRCKRECPQQCI------------KSGSKYKIMQDHCLHCGLCYENCPVRAI 199


>gi|158258982|dbj|BAF82035.1| Fe-hydrogenase [Pseudotrichonympha grassii]
          Length = 550

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 35/123 (28%), Gaps = 18/123 (14%)

Query: 3   IFRCNVSFL--FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           +F  +      +  E +      +   F    T   P      S +     ++    +  
Sbjct: 95  LFDESKKIFVDYSPEILDGKSSTIDVLF----THFRPEHDRGKSVQKTETQSIVFDFS-- 148

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             CI C  C   C               G      + +++  CI CG C   CP  A+ E
Sbjct: 149 -LCIKCNCCFRACID---------LQGIGALNENDHTVNVEDCISCGACVTFCPTTAMRE 198

Query: 121 GPN 123
              
Sbjct: 199 KRE 201


>gi|148642371|ref|YP_001272884.1| polyferredoxin, iron-sulfur binding [Methanobrevibacter smithii
           ATCC 35061]
 gi|148551388|gb|ABQ86516.1| polyferredoxin, iron-sulfur binding [Methanobrevibacter smithii
           ATCC 35061]
          Length = 347

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 11/122 (9%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E     P F    + R++   +  CI CK C   CP  AI +E   +            +
Sbjct: 108 ENHLLKPEFNIIPSKRQFIIDDYLCIRCKKCMKQCPVGAIHVEDDGKVV----------V 157

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158
           +  KCI CG C + CPV+       F    + ++EL       L      + E +R++  
Sbjct: 158 NPFKCISCGECLDVCPVNG-AMKGVFVDNIQDQKELIAQVVTFLEKYINNKEEDLRSLKK 216

Query: 159 DS 160
           D 
Sbjct: 217 DR 218



 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 31/105 (29%), Gaps = 11/105 (10%)

Query: 11  LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70
            ++ +F           F    T     E      RFR           +E CI C  C 
Sbjct: 6   WYIYDFARK---AWAQGFTNAKTSP---EIVEKPSRFRNFP-----NVIKEYCIGCGACI 54

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           + CP+            +         I+   CI CG C E CP 
Sbjct: 55  SSCPSPNAIKLVRDEDDETKEGVTYPIINKSACIRCGFCAEVCPT 99



 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR-----YDIDMIKCIYCGLCQEAC 113
            +  CI C  C  +CP +  T+E G          +      + ID   CI C  C + C
Sbjct: 83  NKSACIRCGFCAEVCPTEPKTLECGENHLLKPEFNIIPSKRQFIIDDYLCIRCKKCMKQC 142

Query: 114 PVDAIVEGPN 123
           PV AI    +
Sbjct: 143 PVGAIHVEDD 152



 Score = 36.2 bits (82), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 9/66 (13%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +R      E C  C++C   CP +AI+ +          +      +  KC+ C +C ++
Sbjct: 256 IRIIDWDSETCKKCQMCIPDCPTKAISFDE---------KNDTIVRNENKCLRCSICYQS 306

Query: 113 CPVDAI 118
           CP   I
Sbjct: 307 CPFSTI 312


>gi|220932466|ref|YP_002509374.1| Glutamate synthase (NADPH) [Halothermothrix orenii H 168]
 gi|219993776|gb|ACL70379.1| Glutamate synthase (NADPH) [Halothermothrix orenii H 168]
          Length = 500

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 35/107 (32%), Gaps = 14/107 (13%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
            S   R    +       E+CI C+LCE  C  +    +          R          
Sbjct: 1   MSSSHRNPEFII--ERDYEKCINCRLCERQCAYEVHYYDEDQDKMMARNRN--------- 49

Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWE 149
           C+ C  C   CP DA+       +  + R+   +  E + N   + E
Sbjct: 50  CVNCHRCVSLCPTDALGIKK---YPLQFRENYNWTSEMINNIYKQAE 93


>gi|116750393|ref|YP_847080.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Syntrophobacter fumaroxidans MPOB]
 gi|116750435|ref|YP_847122.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Syntrophobacter fumaroxidans MPOB]
 gi|116699457|gb|ABK18645.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Syntrophobacter fumaroxidans MPOB]
 gi|116699499|gb|ABK18687.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Syntrophobacter fumaroxidans MPOB]
          Length = 1006

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 7/85 (8%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES---GPRCHDGTRRTVR----YDI 98
            F+   A +      ERC AC  C  +CPA AI   +     R     R        Y I
Sbjct: 95  CFKPTLATQPRFIDLERCTACGQCRQVCPASAINEFNQGIDRREATFMRYPQAIPRGYGI 154

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPN 123
           D   C+ CGLC++ C   A+     
Sbjct: 155 DRASCLGCGLCEKVCLAQAVRYDDQ 179



 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 22/63 (34%), Gaps = 6/63 (9%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           +    C  C +C  ICP  A       R           +I+   C  CGLC  +C   A
Sbjct: 935 SNPNVCSGCGVCVNICPFSAPRFMESGRDAGKA------EINPALCKGCGLCAASCRSGA 988

Query: 118 IVE 120
           I  
Sbjct: 989 IRL 991



 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 3/35 (8%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           ID+ +C  CG C++ CP  AI     F    + R+
Sbjct: 107 IDLERCTACGQCRQVCPASAI---NEFNQGIDRRE 138


>gi|332799384|ref|YP_004460883.1| NADP-dependent oxidoreductase domain-containing protein
           [Tepidanaerobacter sp. Re1]
 gi|332697119|gb|AEE91576.1| NADP-dependent oxidoreductase domain protein [Tepidanaerobacter sp.
           Re1]
          Length = 315

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/124 (20%), Positives = 37/124 (29%), Gaps = 25/124 (20%)

Query: 2   RIFRCNVSFLFLKEFVGAFF-----LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRY 56
           R F   +SF +L             +     F  KT  ++  E+   S   R        
Sbjct: 211 RAFSYILSFPYLHSVAVGMKSNDEVVANISIFDGKTVDSHIEER--LSSEKRKLLIEDW- 267

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
                 C+ C  C   C   A+ + +G              ++   CI CG C   CP  
Sbjct: 268 ------CVGCGECVKHCLYNALHVVNG-----------HSTVNPDACILCGYCSGYCPEF 310

Query: 117 AIVE 120
            I  
Sbjct: 311 CIKI 314


>gi|325969912|ref|YP_004246103.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Spirochaeta sp.
           Buddy]
 gi|324025150|gb|ADY11909.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Spirochaeta sp.
           Buddy]
          Length = 1177

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 29/94 (30%), Gaps = 19/94 (20%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG      +    E CI C  C   CP                A       +      R 
Sbjct: 675 RGVAPFIPHWI-SENCIQCNQCVQSCPHAAIRAKQIDPKDLEGAPETFKTLKSGTKNDRN 733

Query: 94  VRY--DIDMIKCIYCGLCQEACP--VDAIVEGPN 123
           +++   I    C  CG+C E CP  V ++   P 
Sbjct: 734 LQFKIQIYTEDCQGCGVCVETCPSKVKSLELSPI 767


>gi|323141406|ref|ZP_08076297.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT 12067]
 gi|322414155|gb|EFY04983.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT 12067]
          Length = 260

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 11/62 (17%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             C +C  C  ICP  AI+   G    D             KCI C  C  ACP  A + 
Sbjct: 186 PTCTSCGACAKICPTDAISNMDGKMATD-----------AAKCILCMACIHACPKQARIL 234

Query: 121 GP 122
            P
Sbjct: 235 PP 236


>gi|302671638|ref|YP_003831598.1| iron-sulfur cluster-binding protein [Butyrivibrio proteoclasticus
           B316]
 gi|302396111|gb|ADL35016.1| iron-sulfur cluster-binding protein [Butyrivibrio proteoclasticus
           B316]
          Length = 400

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 7/63 (11%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             CI CK C   CPA+AIT+           +     ID  KCI C  CQE CP  A+  
Sbjct: 333 SECIGCKKCYETCPAKAITMVDSG-------KNKIPQIDRSKCIKCFCCQEFCPKGAMKV 385

Query: 121 GPN 123
             N
Sbjct: 386 HYN 388



 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 9/31 (29%), Positives = 12/31 (38%)

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
              +  +   +CI C  C E CP  AI    
Sbjct: 324 YNTKPMVRASECIGCKKCYETCPAKAITMVD 354


>gi|301059767|ref|ZP_07200661.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300446093|gb|EFK09964.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 274

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 9/61 (14%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C  C  C  +C  +A+T+++ P                  C+ CG C   CP   I  G
Sbjct: 146 PCSECGACADVCREEAVTLDASPDGPVFDW---------NLCVRCGQCIGVCPTGTIACG 196

Query: 122 P 122
            
Sbjct: 197 N 197


>gi|298507396|gb|ADI86119.1| iron-sulfur cluster-binding sigma-54-dependent transcriptional
           regulator, FehydlgC and FeS domain-containing [Geobacter
           sulfurreducens KN400]
          Length = 763

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 11/65 (16%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +      +E+C  C  C   CP +AI +E               +I   +CI CG C   
Sbjct: 1   MEPIITDKEKCRKCYCCVRSCPVKAIKVEK-----------RYTEIIFDRCIGCGNCLSN 49

Query: 113 CPVDA 117
           CP  A
Sbjct: 50  CPQRA 54



 Score = 35.1 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 12/31 (38%)

Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
            KC  C  C  +CPV AI     +      R
Sbjct: 9   EKCRKCYCCVRSCPVKAIKVEKRYTEIIFDR 39


>gi|291279648|ref|YP_003496483.1| formate dehydrogenase subunit alpha [Deferribacter desulfuricans
           SSM1]
 gi|290754350|dbj|BAI80727.1| formate dehydrogenase, alpha subunit [Deferribacter desulfuricans
           SSM1]
          Length = 908

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 28/105 (26%), Gaps = 11/105 (10%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           +       +YF     +     E    S  F        +      C+ C  C + C   
Sbjct: 100 ISELSKLFKYFGYKSISSRCFSENRIVSNPF--------FSFDNNLCVQCGRCVSACKEL 151

Query: 77  AITIESGPRCHDGTRRTVR---YDIDMIKCIYCGLCQEACPVDAI 118
                         ++         +   C +CG C + CP  AI
Sbjct: 152 QCRFVWNFAYKGKNQKLTIGADESFEEALCEFCGTCVDFCPTGAI 196


>gi|258513460|ref|YP_003189682.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257777165|gb|ACV61059.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 1174

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 26/85 (30%), Gaps = 19/85 (22%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQA------ITIESGPRCHDGTRR--------- 92
           RG   +       + CI C  C  +CP  A       + E+         +         
Sbjct: 675 RGIAVMVPEWQ-PDNCIQCNQCSFVCPHAAIRPFLLNSEEAAKAPATFITKAAKGKGLEE 733

Query: 93  ---TVRYDIDMIKCIYCGLCQEACP 114
                R  +  + C  CG C E CP
Sbjct: 734 LGLQYRMQVSTLDCTGCGNCVETCP 758


>gi|226330215|ref|ZP_03805733.1| hypothetical protein PROPEN_04128 [Proteus penneri ATCC 35198]
 gi|225201010|gb|EEG83364.1| hypothetical protein PROPEN_04128 [Proteus penneri ATCC 35198]
          Length = 208

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 26/76 (34%), Gaps = 10/76 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ CI C  C   CP  AI   +             + +    C  C LC   CP D I
Sbjct: 113 DEDNCIGCTKCIQACPVDAIVGAT----------RAMHTVIEDLCTGCDLCVPPCPTDCI 162

Query: 119 VEGPNFEFATETRQEL 134
              P     +  + +L
Sbjct: 163 TLVPVKVTTSNWKWDL 178



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C  C +ACPVDAI
Sbjct: 112 IDEDNCIGCTKCIQACPVDAI 132


>gi|193214460|ref|YP_001995659.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing
           protein [Chloroherpeton thalassium ATCC 35110]
 gi|193087937|gb|ACF13212.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Chloroherpeton thalassium ATCC 35110]
          Length = 1200

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 27/100 (27%), Gaps = 24/100 (24%)

Query: 58  NGEERCIACKLCEAICPAQ--------------AITIESGPRCHDGTRRTVRYDIDM--I 101
              E CI C  C  +CP                A          D   + + + I +   
Sbjct: 691 WDPEVCIQCGKCAMVCPHSVIRAKIYDKDILTSAPESFKTIDGRDKNWKDLGFTIQVSVE 750

Query: 102 KCIYCGLCQEACPV--------DAIVEGPNFEFATETRQE 133
            C  C +C + CP          AI   P        R+ 
Sbjct: 751 DCTGCSICVDMCPAKNKTETKLKAINMSPVQPIWESEREN 790



 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 13/58 (22%)

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIV 157
              CI CG C   CP   I                 YDK+ L +  + +++   R+  
Sbjct: 693 PEVCIQCGKCAMVCPHSVIRAK-------------IYDKDILTSAPESFKTIDGRDKN 737


>gi|193213841|ref|YP_001995040.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Chloroherpeton thalassium ATCC 35110]
 gi|193087318|gb|ACF12593.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Chloroherpeton thalassium ATCC 35110]
          Length = 547

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/97 (15%), Positives = 31/97 (31%), Gaps = 17/97 (17%)

Query: 56  YPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTRRTVRYDIDMIKCIYCGL-- 108
           +     +CI C  C   C ++       +         G     +    + +C +C    
Sbjct: 5   FVIDNRKCIGCHACSTACKSENSVPLGVSRTWVKYTEQGAYPNTKRYFQVTRCNHCANPP 64

Query: 109 CQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNG 145
           C   CPV A+            R++   + ++ +  G
Sbjct: 65  CVRICPVTAM----------YQREDGIVEFDKNVCIG 91



 Score = 41.2 bits (95), Expect = 0.047,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 27/86 (31%), Gaps = 12/86 (13%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYD 97
           +       +G +   +      RC  C    C  ICP  A+                   
Sbjct: 34  RTWVKYTEQGAYPNTKRYFQVTRCNHCANPPCVRICPVTAMYQREDGIVEFDKNV----- 88

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPN 123
                CI C  C +ACP +AI   P+
Sbjct: 89  -----CIGCKACTQACPYNAIHVDPD 109



 Score = 40.5 bits (93), Expect = 0.081,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 26/80 (32%), Gaps = 22/80 (27%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG---------LC 109
            +  CI CK C   CP  AI ++                    KC +C           C
Sbjct: 85  DKNVCIGCKACTQACPYNAIHVDPD-------------SGTASKCHFCAHRLENGLEPAC 131

Query: 110 QEACPVDAIVEGPNFEFATE 129
              CP  AIV G   +  +E
Sbjct: 132 VVVCPQHAIVCGDLDDPNSE 151


>gi|39998452|ref|NP_954403.1| sigma-54 dependent transcriptional regulator, Fis family [Geobacter
           sulfurreducens PCA]
 gi|39985399|gb|AAR36753.1| sigma-54 dependent transcriptional regulator, Fis family [Geobacter
           sulfurreducens PCA]
          Length = 763

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 11/65 (16%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +      +E+C  C  C   CP +AI +E               +I   +CI CG C   
Sbjct: 1   MEPIITDKEKCRKCYCCVRSCPVKAIKVEK-----------RYTEIIFDRCIGCGNCLSN 49

Query: 113 CPVDA 117
           CP  A
Sbjct: 50  CPQRA 54



 Score = 35.1 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 10/31 (32%), Positives = 12/31 (38%)

Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
            KC  C  C  +CPV AI     +      R
Sbjct: 9   EKCRKCYCCVRSCPVKAIKVEKRYTEIIFDR 39


>gi|322830647|gb|EFZ33604.1| ribonuclease L inhibitor, putative [Trypanosoma cruzi]
          Length = 647

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 21/54 (38%)

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C   C         G  C +  +++V   I    CI CGLC + CP  AI    
Sbjct: 30  CSLECSKCCPVNLQGKLCIEVQKKSVISKISEELCIGCGLCVKKCPYGAIQIIN 83


>gi|297537625|ref|YP_003673394.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Methylotenera sp. 301]
 gi|297256972|gb|ADI28817.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Methylotenera sp. 301]
          Length = 435

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/123 (23%), Positives = 39/123 (31%), Gaps = 16/123 (13%)

Query: 10  FLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69
            L+L  F+    L L    +                    E A         +C     C
Sbjct: 7   ILYLAPFL--LVLALYMAHQRTLNRRGRERLSEARESGLTEPASIHPVIDLTKCCGSGAC 64

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
              CP +A+++ +G               D   CI  G C EACPV+AI       F TE
Sbjct: 65  VKACPEKALSLINGKAVLT----------DPTHCIGHGACLEACPVEAIKLV----FGTE 110

Query: 130 TRQ 132
            R 
Sbjct: 111 KRG 113


>gi|288573617|ref|ZP_06391974.1| putative PAS/PAC sensor protein [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288569358|gb|EFC90915.1| putative PAS/PAC sensor protein [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 586

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 23/63 (36%), Gaps = 11/63 (17%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             C  C  C   CP +AI IE+G                   C+ CG C E CPV A   
Sbjct: 18  NDCQDCYKCVRACPVKAIKIENGHAQEI-----------SDHCVLCGRCVEICPVGAKRI 66

Query: 121 GPN 123
             +
Sbjct: 67  RDD 69


>gi|254167182|ref|ZP_04874035.1| 2-oxoacid:acceptor oxidoreductase, delta subunit,
           pyruvate/2-ketoisovalerate family [Aciduliprofundum
           boonei T469]
 gi|197624038|gb|EDY36600.1| 2-oxoacid:acceptor oxidoreductase, delta subunit,
           pyruvate/2-ketoisovalerate family [Aciduliprofundum
           boonei T469]
          Length = 105

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 7/82 (8%)

Query: 49  GEHALRRYPNGEERCIACKLCEAIC-------PAQAITIESGPRCHDGTRRTVRYDIDMI 101
           G   + +     ++CI C +C   C            T +  P   +  ++     ID  
Sbjct: 22  GTWRVFKPVINYDKCIRCLICWQFCPEPSILRYDDEETKQKTPAPKEALKKLPVVVIDYD 81

Query: 102 KCIYCGLCQEACPVDAIVEGPN 123
            C  CG+C   CPV AI     
Sbjct: 82  YCKGCGICYNECPVKAIDFVKE 103


>gi|167746957|ref|ZP_02419084.1| hypothetical protein ANACAC_01669 [Anaerostipes caccae DSM 14662]
 gi|317471769|ref|ZP_07931108.1| 4Fe-4S binding domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
 gi|167653917|gb|EDR98046.1| hypothetical protein ANACAC_01669 [Anaerostipes caccae DSM 14662]
 gi|316900746|gb|EFV22721.1| 4Fe-4S binding domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
          Length = 264

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 31/83 (37%), Gaps = 11/83 (13%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P++K         +         +  CI C LC   C   AIT+E+             
Sbjct: 191 VPYDKKHLVQCNSKDKGKDVMSVCKAGCIGCGLCAKECKLGAITVENNIAH--------- 241

Query: 96  YDIDMIKCIYCGLCQEACPVDAI 118
             ID  KC+ CGLC + CP   I
Sbjct: 242 --IDYEKCVNCGLCAKKCPKKII 262



 Score = 38.5 bits (88), Expect = 0.30,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 5/80 (6%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCH-----DGTRRTVRYDIDMIKCIYCGLCQE 111
              +E CI C  C  ICP   I +    + H        +      +    CI CGLC +
Sbjct: 167 YVDKEACIGCGKCTDICPKGLIELVPYDKKHLVQCNSKDKGKDVMSVCKAGCIGCGLCAK 226

Query: 112 ACPVDAIVEGPNFEFATETR 131
            C + AI    N       +
Sbjct: 227 ECKLGAITVENNIAHIDYEK 246



 Score = 37.8 bits (86), Expect = 0.58,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 17/73 (23%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+    C  +CP  AI+I +G              +D   CI CG C + CP   I    
Sbjct: 144 CMGFGSCAQVCPENAISIVNGIAY-----------VDKEACIGCGKCTDICPKGLI---- 188

Query: 123 NFEFATETRQELY 135
             E     ++ L 
Sbjct: 189 --ELVPYDKKHLV 199


>gi|114561242|ref|YP_748755.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Shewanella frigidimarina NCIMB 400]
 gi|114332535|gb|ABI69917.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella
           frigidimarina NCIMB 400]
          Length = 559

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 28/75 (37%), Gaps = 9/75 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E+C  C  C A CP QA+                        C+ CGLC+ ACP + I
Sbjct: 425 NSEKCTLCLSCVATCPTQALKDGGDAPA---------LKFVEQDCVQCGLCEAACPENVI 475

Query: 119 VEGPNFEFATETRQE 133
              P   F    RQ+
Sbjct: 476 SLLPQINFNQSARQQ 490



 Score = 37.4 bits (85), Expect = 0.65,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 11/53 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C   CPA AI+  +              +ID   C   G C  ACP  A+
Sbjct: 196 CNRCLNFCPADAISSVAHK-----------IEIDPYLCHGAGSCTNACPTGAL 237


>gi|303247436|ref|ZP_07333708.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           fructosovorans JJ]
 gi|302491132|gb|EFL51024.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           fructosovorans JJ]
          Length = 266

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 19/62 (30%), Gaps = 11/62 (17%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C  C  C   CP   + +E      D              CI C  C + CP  A V 
Sbjct: 192 DECERCGQCVTACPVGCVHLEDSGVVTDK-----------AACIRCCACVKGCPTGARVM 240

Query: 121 GP 122
             
Sbjct: 241 TD 242


>gi|294141108|ref|YP_003557086.1| electron transport complex protein rnfC [Shewanella violacea DSS12]
 gi|293327577|dbj|BAJ02308.1| electron transport complex protein rnfC [Shewanella violacea DSS12]
          Length = 914

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/110 (22%), Positives = 37/110 (33%), Gaps = 17/110 (15%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACPVDA 117
            C+ C  C  +CPAQ +     P+      +   YD     ++  CI CG C   CP   
Sbjct: 383 PCVRCGECAQVCPAQLL-----PQQLFWHAKAQEYDKATSFNLADCIECGCCTYVCP-SE 436

Query: 118 IVEGPNFEFAT-------ETRQELYYDKERLLNNGDRWESEIVRNIVTDS 160
           I     +  A        E +++    K+R      R E E         
Sbjct: 437 IPLVEYYRIAKSAIKAEAEEKKQAELAKQRFDLRTQRLEDEKRAREEKQK 486


>gi|297568885|ref|YP_003690229.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296924800|gb|ADH85610.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 1181

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 31/109 (28%), Gaps = 26/109 (23%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR- 91
           T    +EK + +                E CI C  C   CP  AI ++   +     + 
Sbjct: 672 TGTTQYEKRNIAVHVPEWL--------PENCIQCGRCSLACPHAAIRMKIVKKADLKGKG 723

Query: 92  ---------------RTVRYDIDMIKCIYCGLCQEACP--VDAIVEGPN 123
                          +     +    C  C LC E CP    A+    N
Sbjct: 724 KTFKTAEAVGKQFKGQEATLQVFTEDCCGCTLCVEVCPAKKKALKMIDN 772


>gi|302879567|ref|YP_003848131.1| electron transport complex, RnfABCDGE type, C subunit [Gallionella
           capsiferriformans ES-2]
 gi|302582356|gb|ADL56367.1| electron transport complex, RnfABCDGE type, C subunit [Gallionella
           capsiferriformans ES-2]
          Length = 555

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 31/93 (33%), Gaps = 2/93 (2%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            CI C  C  +CP++ +  +               D  +  CI CG C   CP   I   
Sbjct: 368 PCIRCTRCAEVCPSE-LQPQELYWFSKAKNLDKAEDYHLFDCIECGACSYVCP-SNIPLV 425

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVR 154
             + FA         +K+      +R E    R
Sbjct: 426 QYYRFAKSEIWARDANKKSADAARERHEFRESR 458


>gi|258404334|ref|YP_003197076.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfohalobium retbaense DSM 5692]
 gi|257796561|gb|ACV67498.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfohalobium retbaense DSM 5692]
          Length = 660

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 29/98 (29%), Gaps = 13/98 (13%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP--------RCHDGTRRTVRYD 97
            F      +      E+C  C LC   CP++                          +  
Sbjct: 225 NFEATVRRKATYVDWEKCTGCGLCMEKCPSKKAYDYFNEGISTTTAINIPFPQATPKKAT 284

Query: 98  IDMIKCIY-----CGLCQEACPVDAIVEGPNFEFATET 130
           ID   C       CG+C + CP +AI      E  TE 
Sbjct: 285 IDADYCRRFTKGKCGVCAKVCPTEAINFEMQDEIVTEK 322



 Score = 39.3 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 6/61 (9%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RC+ C  C   CP  AI      +         + ++    C  CG+C   CP  AI   
Sbjct: 583 RCVGCFKCVNTCPFGAI------QESQDRGGNPKAEVIASVCQGCGICNVTCPQGAIQLQ 636

Query: 122 P 122
            
Sbjct: 637 H 637



 Score = 35.5 bits (80), Expect = 2.3,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 13/27 (48%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPN 123
            + + +C+ C  C   CP  AI E  +
Sbjct: 578 QVQLARCVGCFKCVNTCPFGAIQESQD 604


>gi|225572038|ref|ZP_03780902.1| hypothetical protein RUMHYD_00332 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040473|gb|EEG50719.1| hypothetical protein RUMHYD_00332 [Blautia hydrogenotrophica DSM
           10507]
          Length = 643

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 14/94 (14%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
           ++F+ +   +   +K            L  Y    ++C  C LC   CP  A+       
Sbjct: 562 HYFRDEYIAHIVDKKCPAGVC----KDLLVYKIDPDKCKGCTLCARTCPNDAVIG----- 612

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
                +    + ID  KC+ CG C E C   AI 
Sbjct: 613 -----KVKEPHTIDPNKCVKCGACMEKCRFGAIY 641


>gi|168210757|ref|ZP_02636382.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium
           perfringens B str. ATCC 3626]
 gi|170711180|gb|EDT23362.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium
           perfringens B str. ATCC 3626]
          Length = 273

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 11/70 (15%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
               N    CI CKLCE  C ++AI +E+               ID  KC  CG+C   C
Sbjct: 210 IVNQNCSVGCIGCKLCEKNCSSKAIRVENNLAI-----------IDYEKCTSCGICVSKC 258

Query: 114 PVDAIVEGPN 123
           P  AI    N
Sbjct: 259 PKKAINLREN 268


>gi|150018760|ref|YP_001311014.1| nitroreductase [Clostridium beijerinckii NCIMB 8052]
 gi|149905225|gb|ABR36058.1| nitroreductase [Clostridium beijerinckii NCIMB 8052]
          Length = 271

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 10/60 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +  C+ C LC  +CP+  +++                 I    CI CG C   CP  +I
Sbjct: 7   NQSTCVKCGLCSNVCPSGVLSMNENGPIA----------IHPDNCISCGHCVAICPSSSI 56


>gi|297184013|gb|ADI20133.1| uncharacterized anaerobic dehydrogenase [uncultured alpha
           proteobacterium EB080_L06A09]
          Length = 919

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 5/67 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID----MIKCIYCGLCQEACP 114
             + CI C LC   C  +    +       G    + +D+D       C+ CG C +ACP
Sbjct: 147 NLDACIQCNLCVRACR-EVQVNDVIGLAGRGHDAKIVFDMDDPMGESSCVACGECVQACP 205

Query: 115 VDAIVEG 121
             A++  
Sbjct: 206 TGALMPS 212


>gi|303327686|ref|ZP_07358126.1| periplasmic [Fe] hydrogenase, large subunit [Desulfovibrio sp.
           3_1_syn3]
 gi|302862047|gb|EFL84981.1| periplasmic [Fe] hydrogenase, large subunit [Desulfovibrio sp.
           3_1_syn3]
          Length = 418

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 29/83 (34%), Gaps = 10/83 (12%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
           +E         G+          E+CI C  C+  CP+ AI  E+G              
Sbjct: 11  YEPNVPPQGADGDKMF-FVQVDAEKCIGCDTCQEYCPSGAIYGETGAAHEVAY------- 62

Query: 98  IDMIKCIYCGLCQEACPVDAIVE 120
                CI CG C   CP  A+ E
Sbjct: 63  --PEACINCGQCLTHCPEFAVYE 83


>gi|302388831|ref|YP_003824652.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Thermosediminibacter oceani DSM 16646]
 gi|302199459|gb|ADL07029.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Thermosediminibacter oceani DSM 16646]
          Length = 1206

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 21/67 (31%), Gaps = 3/67 (4%)

Query: 59  GEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
              +CI C LC  +C                    +      +    CI CG C   CP 
Sbjct: 611 DPNKCILCGLCVRVCDEVMGITALGFVNRGFDTVIKPEFELPLRDTSCISCGQCVAVCPT 670

Query: 116 DAIVEGP 122
            A+ E P
Sbjct: 671 GALQEKP 677


>gi|302835808|ref|XP_002949465.1| pyruvate-ferredoxin oxidoreductase [Volvox carteri f. nagariensis]
 gi|300265292|gb|EFJ49484.1| pyruvate-ferredoxin oxidoreductase [Volvox carteri f. nagariensis]
          Length = 1301

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 31/112 (27%), Gaps = 18/112 (16%)

Query: 29  KAKTTINYPFEKGSTSPRFRGEHAL--RRYPNGEERCIACKLCEAICPAQAITIESGPRC 86
           K   +I  P            + A+  +      E C  C +C  +CP  AI        
Sbjct: 763 KLPVSIFSPEGFVPPGTTIIEKRAIASQVPVWKSENCTQCNICAFVCPHAAIRPSLAQPG 822

Query: 87  HDGTRR----------------TVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                                   R  +    C  C LC  ACP +A+   P
Sbjct: 823 ELANAPAAFTSIPAKGPGLQGLQYRIQVSPYDCTGCDLCTHACPDNALEAKP 874


>gi|266620818|ref|ZP_06113753.1| nitroreductase family protein [Clostridium hathewayi DSM 13479]
 gi|288867557|gb|EFC99855.1| nitroreductase family protein [Clostridium hathewayi DSM 13479]
          Length = 257

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 11/94 (11%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
               +     ++C+ C +C   C A  I I +            R  I M  C+ CG C 
Sbjct: 1   MVKHQVIIDPDKCVGCGICAKACAAHNIVIGN-----------KRAKIRMDDCVMCGHCT 49

Query: 111 EACPVDAIVEGPNFEFATETRQELYYDKERLLNN 144
             CP +A+          E ++++  +   +L+ 
Sbjct: 50  AVCPKNAVTISGYDTEQIEKKEKVRLNPSDVLDV 83


>gi|257439221|ref|ZP_05614976.1| iron-sulfur cluster-binding protein [Faecalibacterium prausnitzii
           A2-165]
 gi|257198354|gb|EEU96638.1| iron-sulfur cluster-binding protein [Faecalibacterium prausnitzii
           A2-165]
          Length = 294

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 21/87 (24%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L +    + +C++C  C   C                    V    +  +CI CG+C  A
Sbjct: 219 LFQMKVDKSKCVSCGKCARACKMD---------------VDVTKTPNHTECIRCGMCIRA 263

Query: 113 CPVDAIVE------GPNFEFATETRQE 133
           CP +A+        G   E A   R+ 
Sbjct: 264 CPTNAVCFRYGFGDGKEKENAATLREN 290


>gi|227489231|ref|ZP_03919547.1| possible Fe-S dehydrogenase [Corynebacterium glucuronolyticum ATCC
           51867]
 gi|227090762|gb|EEI26074.1| possible Fe-S dehydrogenase [Corynebacterium glucuronolyticum ATCC
           51867]
          Length = 865

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 21/59 (35%), Gaps = 2/59 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRT--VRYDIDMIKCIYCGLCQEACPV 115
               C  C  C+ +CPA        PR      R      D  +  C  CG C E CPV
Sbjct: 286 DAHTCTECNRCQDLCPAWNTGKPLSPRKVITDIRDGLEITDDVLWSCTNCGACVEQCPV 344


>gi|226939217|ref|YP_002794288.1| Formate dehydrogenase, alpha subunit [Laribacter hongkongensis
           HLHK9]
 gi|226714141|gb|ACO73279.1| Formate dehydrogenase, alpha subunit [Laribacter hongkongensis
           HLHK9]
          Length = 927

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 2/68 (2%)

Query: 55  RYPNGEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
            +     RCI C  C   C        +    R           D+   +C+ CG C EA
Sbjct: 159 YFTYDPGRCIVCSRCVRACEEVQGTFALNLLDRGFATRIGFAGPDLMGSECVSCGACVEA 218

Query: 113 CPVDAIVE 120
           CP  ++VE
Sbjct: 219 CPTASLVE 226


>gi|254173419|ref|ZP_04880092.1| ketoisovalerate oxidoreductase subunit VorD [Thermococcus sp. AM4]
 gi|214032828|gb|EEB73657.1| ketoisovalerate oxidoreductase subunit VorD [Thermococcus sp. AM4]
          Length = 105

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 32/93 (34%), Gaps = 13/93 (13%)

Query: 34  INYPFEKGSTS---PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT 90
             YP    S +     F G+         +++C+ C +C   CP  AI I          
Sbjct: 21  EQYPEAPISLATTLSNFTGDWRTFIPVVDDDKCVKCYICWKFCPEPAIYIREDGYIG--- 77

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                  ID   C  CG+C   CP +AI     
Sbjct: 78  -------IDYDYCKGCGICANECPTNAITMEKE 103


>gi|167753237|ref|ZP_02425364.1| hypothetical protein ALIPUT_01508 [Alistipes putredinis DSM 17216]
 gi|167659168|gb|EDS03298.1| hypothetical protein ALIPUT_01508 [Alistipes putredinis DSM 17216]
          Length = 287

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 8/68 (11%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
            +       CI C  C  +CPA  +T ++ P    G R       ++  CI CG C   C
Sbjct: 3   VQINIDTASCIRCGKCVKVCPAWIMT-QAKPGDPIGLR-------NIDSCIVCGHCAAVC 54

Query: 114 PVDAIVEG 121
           P  ++   
Sbjct: 55  PTGSVRHS 62


>gi|55376868|ref|YP_134719.1| formate dehydrogenase alpha subunit [Haloarcula marismortui ATCC
           43049]
 gi|55229593|gb|AAV45013.1| formate dehydrogenase alpha subunit [Haloarcula marismortui ATCC
           43049]
          Length = 1103

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 4/68 (5%)

Query: 57  PNGEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
                +CI C  C   C        + IE          ++    +   +C+ CG C   
Sbjct: 207 QIDRNKCILCNRCVDACNDVQVEGVLRIEGHGEDTRIGFQSDAETMHDSECVSCGHCATV 266

Query: 113 CPVDAIVE 120
           CP  ++ E
Sbjct: 267 CPTGSLTE 274


>gi|299135388|ref|ZP_07028578.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Afipia sp.
           1NLS2]
 gi|298589796|gb|EFI50001.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Afipia sp.
           1NLS2]
          Length = 658

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 9/64 (14%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C  C  C ++CP  A++ +                     C+ CGLC+  CP   I   P
Sbjct: 505 CTLCLSCVSVCPTGALSDDPD---------RPMLRFAEDACVQCGLCEATCPEKVIELVP 555

Query: 123 NFEF 126
             +F
Sbjct: 556 QIDF 559



 Score = 42.0 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 19/54 (35%), Gaps = 11/54 (20%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           + C  C  +CP  AIT                  ID   C  CG C  ACP  A
Sbjct: 266 VGCHRCLDLCPTGAITPNGD-----------HVAIDADICAGCGQCATACPTGA 308



 Score = 34.3 bits (77), Expect = 5.2,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 13/27 (48%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +I +  C  C  C   CP  A+ + P+
Sbjct: 499 NIKLDGCTLCLSCVSVCPTGALSDDPD 525


>gi|284007516|emb|CBA73012.1| Electron transport complex protein rnfB [Arsenophonus nasoniae]
          Length = 204

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 21/67 (31%), Gaps = 10/67 (14%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C  C   CP  AI   +             + +    C  C LC   CP D
Sbjct: 109 FIDEANCIGCTKCIQACPVDAIVGTT----------RALHTVVEDLCTGCDLCVAPCPTD 158

Query: 117 AIVEGPN 123
            I   P 
Sbjct: 159 CISLLPI 165


>gi|268324145|emb|CBH37733.1| conserved hypothetical protein, containing CobQ/CobB/MinD/ParA
           nucleotide binding domain, and 4Fe-4S binding domains
           [uncultured archaeon]
          Length = 287

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 10/62 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +  C  C  CE  C   AI                 Y ++  +C  CG C   CP +A+
Sbjct: 65  DKTLCTECGTCEETCRFNAIASTEE----------SGYAVNPARCEGCGACVFTCPQEAV 114

Query: 119 VE 120
             
Sbjct: 115 TL 116


>gi|269791962|ref|YP_003316866.1| electron transport complex, RnfABCDGE type, B subunit
           [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269099597|gb|ACZ18584.1| electron transport complex, RnfABCDGE type, B subunit
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 269

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEAC 113
            E RC+ C LC A CP   I +    +          R     ++  + CI CGLC + C
Sbjct: 169 DENRCVGCGLCVASCPKGVIELVVQDKRVRVACNSHHRGLDVKNVCQLGCIGCGLCSKVC 228

Query: 114 PVDAIVEGPN 123
           P  AI    N
Sbjct: 229 PEGAITMEDN 238



 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 11/66 (16%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L      +  CI C LC  +CP  AIT+E                ID  KC  CG C E 
Sbjct: 208 LDVKNVCQLGCIGCGLCSKVCPEGAITMEDNLPV-----------IDQSKCTQCGKCVEK 256

Query: 113 CPVDAI 118
           CP  +I
Sbjct: 257 CPTKSI 262



 Score = 38.5 bits (88), Expect = 0.28,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 11/58 (18%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           C+    C A+CP  AI IE+               ID  +C+ CGLC  +CP   I  
Sbjct: 144 CLGLGTCVAVCPFDAIHIENSLA-----------RIDENRCVGCGLCVASCPKGVIEL 190


>gi|222053655|ref|YP_002536017.1| Fis family transcriptional regulator [Geobacter sp. FRC-32]
 gi|221562944|gb|ACM18916.1| sigma54 specific transcriptional regulator, Fis family [Geobacter
           sp. FRC-32]
          Length = 754

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 11/62 (17%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E+C  C  C   CP +AI +E               +I   +CI CG C   CP  A V 
Sbjct: 9   EKCRKCYSCVRSCPVKAIKVEK-----------TFTEIIFERCIGCGNCLSNCPQHAKVV 57

Query: 121 GP 122
             
Sbjct: 58  TD 59


>gi|218260394|ref|ZP_03475733.1| hypothetical protein PRABACTJOHN_01396 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224548|gb|EEC97198.1| hypothetical protein PRABACTJOHN_01396 [Parabacteroides johnsonii
           DSM 18315]
          Length = 596

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 59  GEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
              +CI C+ CE +C       A+T  +       +    R DI    C YCG C   CP
Sbjct: 148 NMNKCIMCRRCETMCNNIQTVGALTAVNRGFNAAVSTAFER-DIAGSTCSYCGQCVSVCP 206

Query: 115 VDAI 118
           V+A+
Sbjct: 207 VNAL 210


>gi|167746889|ref|ZP_02419016.1| hypothetical protein ANACAC_01601 [Anaerostipes caccae DSM 14662]
 gi|167653849|gb|EDR97978.1| hypothetical protein ANACAC_01601 [Anaerostipes caccae DSM 14662]
          Length = 515

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 21/74 (28%), Gaps = 3/74 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---YDIDMIKCIYCGLCQE 111
                  +CI C  C   C                  +       D+    C+ CG C+ 
Sbjct: 91  CIIRDPNKCILCGDCVRTCDEIQGMGILDFAFRGSKMQVTTAFNKDLAQTDCVGCGQCRA 150

Query: 112 ACPVDAIVEGPNFE 125
            CP  AI    + E
Sbjct: 151 VCPTGAITIKQDIE 164


>gi|160915265|ref|ZP_02077478.1| hypothetical protein EUBDOL_01273 [Eubacterium dolichum DSM 3991]
 gi|158433064|gb|EDP11353.1| hypothetical protein EUBDOL_01273 [Eubacterium dolichum DSM 3991]
          Length = 87

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 10/81 (12%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
            +       F+            + CI C  C  +CP  A+++ +  +            
Sbjct: 15  EKHYVIINVFKKGGIRMPVKVNADTCIGCGACVGVCPVGALSMNADSKSEC--------- 65

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
            D   CI CG C  ACPV+AI
Sbjct: 66  -DEGTCIDCGSCISACPVEAI 85



 Score = 35.5 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVE 120
           ++   CI CG C   CPV A+  
Sbjct: 35  VNADTCIGCGACVGVCPVGALSM 57


>gi|330823666|ref|YP_004386969.1| formate dehydrogenase subunit alpha [Alicycliphilus denitrificans
           K601]
 gi|329309038|gb|AEB83453.1| formate dehydrogenase, alpha subunit [Alicycliphilus denitrificans
           K601]
          Length = 953

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACPVDAI 118
           CI C  C   C  +    +       G    + +D    +    C+ CG C +ACP  A+
Sbjct: 173 CIQCTRCVRACR-EVQVNDVIGYALRGADAKIAFDLDDPMGESTCVGCGECVQACPTGAL 231


>gi|325958247|ref|YP_004289713.1| pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta
           [Methanobacterium sp. AL-21]
 gi|325329679|gb|ADZ08741.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Methanobacterium sp. AL-21]
          Length = 80

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 25/65 (38%), Gaps = 14/65 (21%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +E CI C+ C   CP   I                 YDID   C  CG+C E CPV AI
Sbjct: 30  DKETCIDCENCVMFCPEGCID--------------KNYDIDYDYCKGCGICAEECPVKAI 75

Query: 119 VEGPN 123
                
Sbjct: 76  KMERE 80


>gi|317054762|ref|YP_004103229.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Ruminococcus albus
           7]
 gi|315447031|gb|ADU20595.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Ruminococcus albus
           7]
          Length = 1193

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 21/83 (25%), Gaps = 17/83 (20%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAIT----------------IESGPRCHDGTR 91
           RG        +G   CI C  C  +CP   I                  +          
Sbjct: 688 RGIAVDVPAWDG-ANCIQCNFCSYVCPHAVIRPSIMTDDELKKAPKLAQDKAVPVTGMPG 746

Query: 92  RTVRYDIDMIKCIYCGLCQEACP 114
                 +  + C  CG C   CP
Sbjct: 747 YNFVMTMSALDCTGCGSCVNVCP 769


>gi|302337816|ref|YP_003803022.1| hydrogenase large subunit domain protein [Spirochaeta smaragdinae
           DSM 11293]
 gi|301635001|gb|ADK80428.1| hydrogenase large subunit domain protein [Spirochaeta smaragdinae
           DSM 11293]
          Length = 575

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 11/67 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              +  C  C  C   CP +AI ++ G              +    C+YCG C   CPV 
Sbjct: 6   YTEQAACQDCYKCVRECPVKAIEVKDG-----------HAVVVQDLCLYCGHCVTVCPVG 54

Query: 117 AIVEGPN 123
           A     +
Sbjct: 55  AKRMRED 61


>gi|319764059|ref|YP_004127996.1| formate dehydrogenase, alpha subunit [Alicycliphilus denitrificans
           BC]
 gi|317118620|gb|ADV01109.1| formate dehydrogenase, alpha subunit [Alicycliphilus denitrificans
           BC]
          Length = 953

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACPVDAI 118
           CI C  C   C  +    +       G    + +D    +    C+ CG C +ACP  A+
Sbjct: 173 CIQCTRCVRACR-EVQVNDVIGYALRGADAKIAFDLDDPMGESTCVGCGECVQACPTGAL 231


>gi|296134042|ref|YP_003641289.1| NADH dehydrogenase (quinone) [Thermincola sp. JR]
 gi|296032620|gb|ADG83388.1| NADH dehydrogenase (quinone) [Thermincola potens JR]
          Length = 595

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 10/68 (14%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             L R     E C  C LC   CP  AI  +              ++ID  KC  C  C 
Sbjct: 536 KKLSRIRIIPEECKKCGLCARECPVGAIKGKPRE----------THEIDPEKCTKCEACL 585

Query: 111 EACPVDAI 118
           + CP  AI
Sbjct: 586 KKCPFGAI 593



 Score = 41.6 bits (96), Expect = 0.037,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 22/70 (31%), Gaps = 8/70 (11%)

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
                    +          ++  R  I   +C  CGLC   CPV AI   P        
Sbjct: 516 YFKDEYMAHVRDKVCPAGVCKKLSRIRIIPEECKKCGLCARECPVGAIKGKP-------- 567

Query: 131 RQELYYDKER 140
           R+    D E+
Sbjct: 568 RETHEIDPEK 577


>gi|291561268|emb|CBL40067.1| hydrogenases, Fe-only [butyrate-producing bacterium SS3/4]
          Length = 577

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 31/99 (31%), Gaps = 7/99 (7%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQA---ITIESGPRCHDGTRRTVRYDIDMI 101
           P ++             +CI C  C  +C       I    G              I   
Sbjct: 127 PEYQPWDKDFPLIRNSAKCIKCMRCVQVCDKIQGLGIWDVEGTGSRTTVNVAGHKTIREA 186

Query: 102 KCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140
            C  CG C   CPV A+ E  + E   E  +    +K++
Sbjct: 187 DCALCGQCITHCPVGALSERDDTEKVWEAIE----NKDK 221


>gi|281423156|ref|ZP_06254069.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Prevotella oris
           F0302]
 gi|281402492|gb|EFB33323.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Prevotella oris
           F0302]
          Length = 1196

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/102 (23%), Positives = 32/102 (31%), Gaps = 16/102 (15%)

Query: 28  FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH 87
           F    T++  ++ G+ +   RG  A        E CI C  C   CP   I         
Sbjct: 658 FVKHGTVDGTWKNGTAAYEKRGVAAFVPVWK-PENCIQCNKCAYSCPHATIRPFVLDEKE 716

Query: 88  DGTRRTVRYDIDMIK---------------CIYCGLCQEACP 114
            G       DI   K               C+ CG C + CP
Sbjct: 717 KGDFGDETIDILAPKQLKGMQFRIQVDVLDCLGCGNCADVCP 758


>gi|268325215|emb|CBH38803.1| heterodisulfide reductase subunit A [uncultured archaeon]
          Length = 728

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 22/66 (33%), Gaps = 9/66 (13%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              EE CI C  C  +CP  A+ ++                ++   C  CG C   CP  
Sbjct: 619 QINEEICIGCGTCAEVCPYGALELDE---------VMQVMTVNEAVCKGCGGCNSVCPSG 669

Query: 117 AIVEGP 122
           A     
Sbjct: 670 AATMKH 675


>gi|294955243|ref|XP_002788446.1| Pyruvate-flavodoxin oxidoreductase, putative [Perkinsus marinus
           ATCC 50983]
 gi|239903910|gb|EER20242.1| Pyruvate-flavodoxin oxidoreductase, putative [Perkinsus marinus
           ATCC 50983]
          Length = 586

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 38/120 (31%), Gaps = 30/120 (25%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAI---------------TIESGPRCHDGTRRTVR 95
            AL       ++C  C +C   CP   I               T +S           + 
Sbjct: 136 VALMIPIVDMDKCTQCNICSMSCPHACIRPFLLSQAEDDAKPSTFDSRKAKGGAEVAGLH 195

Query: 96  YDID--MIKCIYCGLCQEACPVDAIVE----------GPNFEFATE--TRQELYYDKERL 141
           Y I    + C  C  C  ACP DA+             PN+E+A     R    +DK  L
Sbjct: 196 YRIQVSPLDCTGCETCVNACPYDALRMEHLADFEDIEKPNWEYAVSLPDRSSR-FDKTTL 254


>gi|189485525|ref|YP_001956466.1| NAD-dependent Fe-hydrogenase catalytic component [uncultured
           Termite group 1 bacterium phylotype Rs-D17]
 gi|170287484|dbj|BAG14005.1| NAD-dependent Fe-hydrogenase catalytic component [uncultured
           Termite group 1 bacterium phylotype Rs-D17]
          Length = 667

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 5/69 (7%)

Query: 62  RCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           +CI C  C   C       AI   +          ++  D++   C+YCG C   CP  A
Sbjct: 145 KCILCGNCVRFCDEIQSVGAIGF-ANRGSKSVICPSLGCDLESSGCVYCGQCARVCPTGA 203

Query: 118 IVEGPNFEF 126
           I+      +
Sbjct: 204 IMPKSEISY 212


>gi|91793219|ref|YP_562870.1| electron transport complex protein RnfB [Shewanella denitrificans
           OS217]
 gi|91715221|gb|ABE55147.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           denitrificans OS217]
          Length = 205

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 24/66 (36%), Gaps = 10/66 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E+ CI C  C   CP  AI               + + +    C  C LC E CPVD
Sbjct: 108 YIREDECIGCTKCIQACPVDAILGAGK----------LMHTVIAADCTGCDLCVEPCPVD 157

Query: 117 AIVEGP 122
            I   P
Sbjct: 158 CIDMLP 163


>gi|15894793|ref|NP_348142.1| anaerobic sulfite reduction protein C, reductase [Clostridium
           acetobutylicum ATCC 824]
 gi|15024462|gb|AAK79482.1|AE007661_12 Anaerobic sulfite reduction protein C, reductase [Clostridium
           acetobutylicum ATCC 824]
          Length = 320

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 23/83 (27%), Gaps = 8/83 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +         G   +       + C++C  C  +C                +    +
Sbjct: 145 CPNDCAKVRMHDFGIMGMTEPHYESDTCVSCGACVKVC--------KKKSVGALSAVNYK 196

Query: 96  YDIDMIKCIYCGLCQEACPVDAI 118
                 KCI CG C   CP  A 
Sbjct: 197 VVRRGEKCIGCGECVLKCPTGAW 219


>gi|118581974|ref|YP_903224.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pelobacter propionicus DSM 2379]
 gi|118504684|gb|ABL01167.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pelobacter
           propionicus DSM 2379]
          Length = 367

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 25/83 (30%), Gaps = 17/83 (20%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C  C  C   C   AI I  G              ID +KC  C  C   CPV AI    
Sbjct: 194 CTGCGFCLKSCAHDAIAINDGIAY-----------IDALKCAGCSRCISVCPVRAIQVQW 242

Query: 123 NFEFATETRQELYYDKERLLNNG 145
           N         +L   K      G
Sbjct: 243 NEA------ADLVMRKMAEYARG 259


>gi|325508931|gb|ADZ20567.1| Anaerobic sulfite reduction protein C, reductase [Clostridium
           acetobutylicum EA 2018]
          Length = 320

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 23/83 (27%), Gaps = 8/83 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +         G   +       + C++C  C  +C                +    +
Sbjct: 145 CPNDCAKVRMHDFGIMGMTEPHYESDTCVSCGACVKVC--------KKKSVGALSAVNYK 196

Query: 96  YDIDMIKCIYCGLCQEACPVDAI 118
                 KCI CG C   CP  A 
Sbjct: 197 VVRRGEKCIGCGECVLKCPTGAW 219


>gi|313202859|ref|YP_004041516.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Paludibacter
           propionicigenes WB4]
 gi|312442175|gb|ADQ78531.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Paludibacter
           propionicigenes WB4]
          Length = 1177

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 31/95 (32%), Gaps = 20/95 (21%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAIT--------IESGPRCHDGTRRTVRYDID 99
           RG  +     N    CI C  C  +CP  AI          E+ P+         ++   
Sbjct: 677 RGVASHVPVWN-SSNCIQCNQCAYVCPHAAIRPFILDLKEQENAPQFEMLKTNGKQFADM 735

Query: 100 MIK-------CIYCGLCQEACPVD----AIVEGPN 123
             +       C+ C  C E CP +    A+   P 
Sbjct: 736 TFRIQVDVLDCMGCNNCAEVCPGNKGNKALTMVPI 770


>gi|310778491|ref|YP_003966824.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
           [Ilyobacter polytropus DSM 2926]
 gi|309747814|gb|ADO82476.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
           [Ilyobacter polytropus DSM 2926]
          Length = 587

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 59  GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115
             ++CI C+ CE +C   Q   I S       T     ++ D+    C +CG C   CPV
Sbjct: 148 DMDKCIMCRRCETMCNKIQTCNILSAVNRGFETVVAPSHEKDLEDTACTFCGQCVAVCPV 207

Query: 116 DAIVEGP 122
            A+ E  
Sbjct: 208 GALHEKD 214


>gi|306819962|ref|ZP_07453613.1| pyruvate formate-lyase activating enzyme [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
 gi|304551998|gb|EFM39938.1| pyruvate formate-lyase activating enzyme [Eubacterium yurii subsp.
           margaretiae ATCC 43715]
          Length = 305

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 16/79 (20%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ++CI C  C  +C   AI ++              Y +D  KC  CG C   CP  A++ 
Sbjct: 59  DQCIRCGSCFKVCKVGAINLDKE------------YIVDREKCTSCGECVLVCPSSALLM 106

Query: 121 ----GPNFEFATETRQELY 135
                   E   E R++  
Sbjct: 107 KGKTMTVEEVIKEARKDSI 125



 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 20/71 (28%), Gaps = 8/71 (11%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                G    I  K C   C   +       +     R          +CI CG C + C
Sbjct: 20  IHDGPGIRTIIFLKGCPLRCRWCSNPESQKMKPELMYR--------SDQCIRCGSCFKVC 71

Query: 114 PVDAIVEGPNF 124
            V AI     +
Sbjct: 72  KVGAINLDKEY 82


>gi|295109742|emb|CBL23695.1| Uncharacterized conserved protein [Ruminococcus obeum A2-162]
          Length = 379

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 22/62 (35%), Gaps = 6/62 (9%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               ERCI C +C   CP                 R      D  KCI C  CQE CP  
Sbjct: 321 YIDPERCIRCGICVKSCPV------PDKAVDFRKGRENPPVYDYKKCIRCFCCQEMCPEK 374

Query: 117 AI 118
           AI
Sbjct: 375 AI 376



 Score = 38.5 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 17/40 (42%)

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           A +               +  ID  +CI CG+C ++CPV 
Sbjct: 301 ARSGMWERLAKALNIFQKKPYIDPERCIRCGICVKSCPVP 340


>gi|294494959|ref|YP_003541452.1| cobyrinic acid ac-diamide synthase [Methanohalophilus mahii DSM
           5219]
 gi|292665958|gb|ADE35807.1| Cobyrinic acid ac-diamide synthase [Methanohalophilus mahii DSM
           5219]
          Length = 274

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 20/63 (31%), Gaps = 11/63 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E++C  C  C   C   A+                   +    C  CG C   CP DAI
Sbjct: 62  DEQKCDHCGKCADFCNYNALAALPQKVM-----------VFPDLCHGCGGCSLVCPHDAI 110

Query: 119 VEG 121
            E 
Sbjct: 111 SET 113


>gi|257065152|ref|YP_003144824.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Slackia heliotrinireducens DSM 20476]
 gi|256792805|gb|ACV23475.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Slackia heliotrinireducens DSM 20476]
          Length = 597

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 10/66 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L ++    E C  C +C   CPA AI+ +          R   + ID   CI CG C+EA
Sbjct: 535 LTQFAIEPEACTGCGMCMRACPAGAISGD----------RREPHVIDPHLCIACGSCREA 584

Query: 113 CPVDAI 118
           C  DA+
Sbjct: 585 CHFDAV 590



 Score = 42.0 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 8/60 (13%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
            I+          +  ++ I+   C  CG+C  ACP  AI        + + R+    D 
Sbjct: 521 HIDGKECPAGVCAKLTQFAIEPEACTGCGMCMRACPAGAI--------SGDRREPHVIDP 572


>gi|258406435|ref|YP_003199177.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfohalobium retbaense DSM 5692]
 gi|257798662|gb|ACV69599.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfohalobium retbaense DSM 5692]
          Length = 660

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 29/98 (29%), Gaps = 13/98 (13%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP--------RCHDGTRRTVRYD 97
            F      +      E+C  C LC   CP++                          +  
Sbjct: 225 NFEATVRRKATYVDWEKCTGCGLCMEKCPSKKAYDYFNEGISTTTAINIPFPQATPKKAT 284

Query: 98  IDMIKCIY-----CGLCQEACPVDAIVEGPNFEFATET 130
           ID   C       CG+C + CP +AI      E  TE 
Sbjct: 285 IDADYCRRFTKGKCGVCAKVCPTEAINFEMQDEIVTEK 322



 Score = 39.3 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 6/61 (9%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RC+ C  C   CP  AI      +         + ++    C  CG+C   CP  AI   
Sbjct: 583 RCVGCFKCVNTCPFGAI------QESQDRGGNPKAEVIASVCQGCGICNVTCPQGAIQLQ 636

Query: 122 P 122
            
Sbjct: 637 H 637



 Score = 35.5 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 8/27 (29%), Positives = 13/27 (48%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPN 123
            + + +C+ C  C   CP  AI E  +
Sbjct: 578 QVQLARCVGCFKCVNTCPFGAIQESQD 604


>gi|225572064|ref|ZP_03780928.1| hypothetical protein RUMHYD_00358 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040499|gb|EEG50745.1| hypothetical protein RUMHYD_00358 [Blautia hydrogenotrophica DSM
           10507]
          Length = 584

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 10/63 (15%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           +    + C  C  C   CP  AI+ E              + ID   CI CG C+E+C  
Sbjct: 529 HYEITDNCKGCGACARKCPVGAISGEKKK----------VHSIDPNVCIKCGKCEESCKF 578

Query: 116 DAI 118
           DA+
Sbjct: 579 DAV 581


>gi|153855001|ref|ZP_01996214.1| hypothetical protein DORLON_02220 [Dorea longicatena DSM 13814]
 gi|149752498|gb|EDM62429.1| hypothetical protein DORLON_02220 [Dorea longicatena DSM 13814]
          Length = 578

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/107 (19%), Positives = 34/107 (31%), Gaps = 4/107 (3%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93
           I  PF+       +  E  L R  +   +C+ C        +  +    G          
Sbjct: 119 IEIPFKMEIERQPWNKEFPLIRDSSKCIKCMRCVQVCEKVQSLGVWDVEGTGSRTTINVA 178

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140
               I+   C  CG C   CPV A+    +    TE   +   D ++
Sbjct: 179 GHRTIEEASCALCGQCITHCPVGALRARDD----TEDVWDAIADPDK 221


>gi|121534390|ref|ZP_01666214.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Thermosinus carboxydivorans Nor1]
 gi|121307160|gb|EAX48078.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Thermosinus carboxydivorans Nor1]
          Length = 96

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 23/68 (33%), Gaps = 10/68 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +  C  CK C   CP   +   +        +           C  CG+C   CPV AI
Sbjct: 37  DKGLCTECKTCWIFCPDACVNYSADEGISFNLKY----------CKGCGICSNVCPVGAI 86

Query: 119 VEGPNFEF 126
              P  +F
Sbjct: 87  SRVPELDF 94


>gi|152986422|ref|YP_001345936.1| dihydropyrimidine dehydrogenase [Pseudomonas aeruginosa PA7]
 gi|150961580|gb|ABR83605.1| probable oxidoreductase [Pseudomonas aeruginosa PA7]
          Length = 424

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117
            ++ CI C  C   C   +    +     DGT R   Y++   +C+ C LCQ  CPV + 
Sbjct: 341 DQDACIGCGRCHIACEDTSHQAIASLPRADGTHR---YEVIDAECVGCNLCQITCPVENC 397

Query: 118 IVEGPN 123
           I   P 
Sbjct: 398 IEMVPQ 403


>gi|107099425|ref|ZP_01363343.1| hypothetical protein PaerPA_01000437 [Pseudomonas aeruginosa PACS2]
 gi|313111935|ref|ZP_07797724.1| putative dihydroorotate dehydrogenase [Pseudomonas aeruginosa
           39016]
 gi|310884226|gb|EFQ42820.1| putative dihydroorotate dehydrogenase [Pseudomonas aeruginosa
           39016]
          Length = 424

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117
            ++ CI C  C   C   +    +     DGT R   Y++   +C+ C LCQ  CPV + 
Sbjct: 341 DQDACIGCGRCHIACEDTSHQAIASLPRADGTHR---YEVIDAECVGCNLCQITCPVENC 397

Query: 118 IVEGPN 123
           I   P 
Sbjct: 398 IEMVPQ 403


>gi|332798262|ref|YP_004459761.1| cobyrinic acid ac-diamide synthase [Tepidanaerobacter sp. Re1]
 gi|332695997|gb|AEE90454.1| Cobyrinic acid ac-diamide synthase [Tepidanaerobacter sp. Re1]
          Length = 281

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 22/74 (29%), Gaps = 11/74 (14%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
            +  L       ++C  C +C   C   A+                   +    C  CG 
Sbjct: 55  EDVMLAVPTIDYDKCTHCGICVQKCAFNALADIKVKLL-----------VFEELCHGCGG 103

Query: 109 CQEACPVDAIVEGP 122
           C   CPV AI E  
Sbjct: 104 CVLLCPVGAIAETD 117


>gi|326796152|ref|YP_004313972.1| electron transport complex, RnfABCDGE type, C subunit [Marinomonas
           mediterranea MMB-1]
 gi|326546916|gb|ADZ92136.1| electron transport complex, RnfABCDGE type, C subunit [Marinomonas
           mediterranea MMB-1]
          Length = 1029

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           + CI C +CE  CPA  +  +                 ++  CI CG C   CP
Sbjct: 371 QPCIRCGMCEQACPAS-LLPQQLLWFSKSQEHEKAEHYNLFDCIECGACSYVCP 423


>gi|309355077|emb|CAP39440.2| CBR-ABCE-1 protein [Caenorhabditis briggsae AF16]
          Length = 612

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 29/83 (34%), Gaps = 1/83 (1%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           KG        +  LR     ++RC   K C   C         G  C      +    I 
Sbjct: 4   KGPLIKNNETDVPLRIAIVEKDRCKP-KNCGLACKKACPVNRQGKMCIVVEATSTISTIS 62

Query: 100 MIKCIYCGLCQEACPVDAIVEGP 122
            I CI CG+C + CP DAI    
Sbjct: 63  EILCIGCGICVKKCPYDAIKIIN 85


>gi|295107456|emb|CBL04999.1| Nitroreductase [Gordonibacter pamelaeae 7-10-1-b]
          Length = 265

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 27/77 (35%), Gaps = 13/77 (16%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
                    ERCI C  C A C    + +E G     G            +CI CG C  
Sbjct: 1   MFMLIEIDAERCIGCGRCVADCVGSNLLVEDGTARVKG------------RCILCGHCVA 48

Query: 112 ACPVDAIVEGPNFEFAT 128
            CP  A+   P ++ A 
Sbjct: 49  VCPTAAVSI-PGYDMAD 64


>gi|288817477|ref|YP_003431824.1| cytochrome b/b6 [Hydrogenobacter thermophilus TK-6]
 gi|288786876|dbj|BAI68623.1| cytochrome b/b6 [Hydrogenobacter thermophilus TK-6]
 gi|308751084|gb|ADO44567.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Hydrogenobacter thermophilus TK-6]
          Length = 647

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 7/76 (9%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
           P               E+C  C+ C   CP +AIT++             +  ++  KC 
Sbjct: 283 PWLIKGKRNPPAHIDFEKCTGCEQCYIDCPYEAITMKDFEDK-------KKAVLNESKCA 335

Query: 105 YCGLCQEACPVDAIVE 120
            CG+C  +C V AI  
Sbjct: 336 GCGICVGSCSVQAIDI 351



 Score = 35.1 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%)

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           +R     ID  KC  C  C   CP +AI    +FE
Sbjct: 289 KRNPPAHIDFEKCTGCEQCYIDCPYEAITM-KDFE 322


>gi|260913481|ref|ZP_05919959.1| ferredoxin-type protein NapH [Pasteurella dagmatis ATCC 43325]
 gi|260632421|gb|EEX50594.1| ferredoxin-type protein NapH [Pasteurella dagmatis ATCC 43325]
          Length = 291

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 23/77 (29%), Gaps = 5/77 (6%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            LR       +C  C  C  +CP          R     +      +    CI CG C +
Sbjct: 215 ILRIKVENRSKCDNCMDCYNVCP-----EPQVLRAPLHGKNNESPLVLSKDCISCGRCID 269

Query: 112 ACPVDAIVEGPNFEFAT 128
            CP    +    F  + 
Sbjct: 270 VCPEKVFIFTTRFNNSV 286


>gi|296137471|ref|YP_003644713.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thiomonas
           intermedia K12]
 gi|295797593|gb|ADG32383.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thiomonas
           intermedia K12]
          Length = 311

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 33/96 (34%), Gaps = 10/96 (10%)

Query: 33  TINYPFEKGSTSPRFRGEH---ALRRYPNGEERCIA--CKLCEAICPAQAITIESGPRCH 87
           T    FE    +  FR       L  YP+ +   +   C  CE         IE  P   
Sbjct: 111 TAACKFENNIPTGVFRTWVPDVELGVYPDTKRAFLPRLCNHCERP-----SCIEVCPAGA 165

Query: 88  DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
              R+    +ID   C  CG C  ACP DA    P 
Sbjct: 166 TWQRKDGIVEIDYDLCWGCGACVNACPYDARFINPI 201


>gi|253570623|ref|ZP_04848031.1| H2-dehydrogenase [Bacteroides sp. 1_1_6]
 gi|251839572|gb|EES67655.1| H2-dehydrogenase [Bacteroides sp. 1_1_6]
          Length = 387

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 6/55 (10%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            C  C  C  +CP   I +    +     +           CI CG C++ CP  
Sbjct: 11  NCSGCNACAEVCPKHCIEMVPDKKGFFYPKVDAV------TCIDCGACEKVCPFQ 59



 Score = 37.0 bits (84), Expect = 0.90,   Method: Composition-based stats.
 Identities = 8/22 (36%), Positives = 9/22 (40%)

Query: 102 KCIYCGLCQEACPVDAIVEGPN 123
            C  C  C E CP   I   P+
Sbjct: 11  NCSGCNACAEVCPKHCIEMVPD 32


>gi|225386466|ref|ZP_03756230.1| hypothetical protein CLOSTASPAR_00213 [Clostridium asparagiforme
           DSM 15981]
 gi|225047435|gb|EEG57681.1| hypothetical protein CLOSTASPAR_00213 [Clostridium asparagiforme
           DSM 15981]
          Length = 293

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 33/94 (35%), Gaps = 14/94 (14%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
             KG    +  G  A++   +    C+ C  C   CP +AI  E+               
Sbjct: 199 EVKGKRPYKEYGGSAMKPAADE--SCVGCGTCAEQCPVKAIPAEAPDTTDR--------- 247

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
               +CI C  C + CP  A    P  + A E +
Sbjct: 248 ---ERCISCMRCIKVCPAGARKLDPAGQLAVEQK 278


>gi|182626227|ref|ZP_02953985.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium
           perfringens D str. JGS1721]
 gi|177908491|gb|EDT71024.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium
           perfringens D str. JGS1721]
          Length = 273

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 11/70 (15%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
               N    CI CKLCE  CP++AI +E+               ID  KC  CG+C   C
Sbjct: 210 IVNQNCSVGCIGCKLCEKNCPSEAIRVENNLAI-----------IDYEKCTSCGICVSKC 258

Query: 114 PVDAIVEGPN 123
           P  AI    N
Sbjct: 259 PKKAINLREN 268



 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 5/78 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCIYCGLCQEAC 113
              +C+ACK C + CP   I I    +    +        +      + CI C LC++ C
Sbjct: 170 DSSKCVACKACISACPQNLIDIIKDDQKVIVSCNSNDSGKIVNQNCSVGCIGCKLCEKNC 229

Query: 114 PVDAIVEGPNFEFATETR 131
           P +AI    N       +
Sbjct: 230 PSEAIRVENNLAIIDYEK 247


>gi|160941378|ref|ZP_02088715.1| hypothetical protein CLOBOL_06271 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435939|gb|EDP13706.1| hypothetical protein CLOBOL_06271 [Clostridium bolteae ATCC
           BAA-613]
          Length = 95

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 26/75 (34%), Gaps = 8/75 (10%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G   L R       CI C  CE  CP+  ITI+                ID   C  CG+
Sbjct: 23  GSWRLERPVVDYTSCIKCGTCERYCPSDIITIDKDAE--------ECVRIDFDYCKGCGV 74

Query: 109 CQEACPVDAIVEGPN 123
           C   CP D I     
Sbjct: 75  CANECPKDCIAMVEE 89


>gi|149926238|ref|ZP_01914500.1| ferredoxin [Limnobacter sp. MED105]
 gi|149825056|gb|EDM84268.1| ferredoxin [Limnobacter sp. MED105]
          Length = 160

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 26/89 (29%), Gaps = 10/89 (11%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
              P               + CI C LC   CP  AI   S  R            +   
Sbjct: 11  PVDPSCGTTIERHIASIHPQHCIGCTLCIKACPVDAIVGSSKRRHA----------VLAE 60

Query: 102 KCIYCGLCQEACPVDAIVEGPNFEFATET 130
            C  C LC   CPVD I      EF+   
Sbjct: 61  LCTGCELCIPPCPVDCIDMVFMPEFSAWD 89


>gi|197120163|ref|YP_002140590.1| iron-sulfur cluster-binding sigma-54-dependent transcriptional
           regulator, FehydlgC/FeS domain-containing protein
           [Geobacter bemidjiensis Bem]
 gi|197089523|gb|ACH40794.1| iron-sulfur cluster-binding sigma-54-dependent transcriptional
           regulator, FehydlgC and FeS domain-containing protein
           [Geobacter bemidjiensis Bem]
          Length = 759

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 11/69 (15%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C  C  C   CP +AI +E               +I   +CI CG C   CP  A V 
Sbjct: 9   DHCRKCYSCVRSCPVKAIKVEK-----------SYTEIIAERCIGCGNCMSHCPQHAKVI 57

Query: 121 GPNFEFATE 129
             N     E
Sbjct: 58  ADNVAVTNE 66


>gi|78189686|ref|YP_380024.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Chlorobium
           chlorochromatii CaD3]
 gi|78171885|gb|ABB28981.1| Pyruvate:ferredoxin (flavodoxin) oxidoreductase [Chlorobium
           chlorochromatii CaD3]
          Length = 1189

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/98 (16%), Positives = 23/98 (23%), Gaps = 24/98 (24%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC----------------EAICPAQ 76
           T    FEK + +                + CI C  C                E +  A 
Sbjct: 672 TGTSKFEKRNLADAIPVW--------EPDLCIQCSKCSLVCPHAAIRVKVYDAEYLASAP 723

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                +  +            I    C  C +C   CP
Sbjct: 724 CTFKHTDAKGGHWEGMKYTIQIAPEDCTGCEVCAHVCP 761


>gi|15898393|ref|NP_342998.1| oxidoreductase [Sulfolobus solfataricus P2]
 gi|13814806|gb|AAK41788.1| Oxidoreductase [Sulfolobus solfataricus P2]
          Length = 455

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 37/92 (40%), Gaps = 17/92 (18%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
               L  Y NG  +  AC +CE  CP  AI ++          +    +ID  KC  CGL
Sbjct: 109 KPIYLSEYCNGLYK--ACNVCEFSCPYNAIKVD----------KKTGVNIDYTKCTSCGL 156

Query: 109 CQEACPVDAIVE-----GPNFEFATETRQELY 135
           C  +CPV AI          FE A    ++  
Sbjct: 157 CVASCPVSAIQFPSLSQNSIFELAKVKGEKRI 188



 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 23/68 (33%), Gaps = 7/68 (10%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
            + L        RC  C+ C   CP  AI +                D D +KCI C +C
Sbjct: 290 PYILFDVSIDNNRCTLCESCVNWCPTSAIMLRRSSGVE-------EIDFDPMKCIGCNIC 342

Query: 110 QEACPVDA 117
              CP   
Sbjct: 343 VNVCPESC 350


>gi|268576198|ref|XP_002643079.1| C. briggsae CBR-ABCE-1 protein [Caenorhabditis briggsae]
          Length = 610

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 29/83 (34%), Gaps = 1/83 (1%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           KG        +  LR     ++RC   K C   C         G  C      +    I 
Sbjct: 4   KGPLIKNNETDVPLRIAIVEKDRCKP-KNCGLACKKACPVNRQGKMCIVVEATSTISTIS 62

Query: 100 MIKCIYCGLCQEACPVDAIVEGP 122
            I CI CG+C + CP DAI    
Sbjct: 63  EILCIGCGICVKKCPYDAIKIIN 85


>gi|14591507|ref|NP_143588.1| ferredoxin [Pyrococcus horikoshii OT3]
 gi|3258181|dbj|BAA30864.1| 168aa long hypothetical ferredoxin [Pyrococcus horikoshii OT3]
 gi|56403969|dbj|BAD77803.1| dye-linked L-proline dehydrogenase gamma2 subunit [Pyrococcus
           horikoshii OT3]
          Length = 168

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/131 (25%), Positives = 46/131 (35%), Gaps = 18/131 (13%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERC---IACKLCEAICPAQAITIESGPRCHDGTRR 92
            P E  S  P+   E  LR  P     C   I C  C+ +CP  AI +++          
Sbjct: 14  TPEELFSIIPK-PSEKRLRERPVAVPECPQRIPCTPCKEVCPTNAIKMDNPNDIPI---- 68

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEI 152
                +D  KCI C LC + CP  A           + R         LL   +R E  I
Sbjct: 69  -----VDYEKCIGCSLCVQVCPGLAFFM--IHYVGDKAR---ITLPHELLPLPERGEEVI 118

Query: 153 VRNIVTDSPYR 163
           + N   +   R
Sbjct: 119 LLNRKGEEVGR 129


>gi|116747695|ref|YP_844382.1| hypothetical protein Sfum_0246 [Syntrophobacter fumaroxidans MPOB]
 gi|116696759|gb|ABK15947.1| protein of unknown function DUF362 [Syntrophobacter fumaroxidans
           MPOB]
          Length = 396

 Score = 45.9 bits (107), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 27/85 (31%), Gaps = 12/85 (14%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPN-GEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93
             P   G           L + P      C AC  C   CPA AIT              
Sbjct: 306 MTPLVFGPKFTHKLMRKFLVQRPQADPLLCKACGDCRKYCPAGAITQAGSK--------- 356

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAI 118
              + D  +CI C  C E CP  A+
Sbjct: 357 --IEFDYDRCIRCYCCIEVCPHGAL 379


>gi|302035619|ref|YP_003795941.1| putative NADH-quinone oxidoreductase subunit G [Candidatus
           Nitrospira defluvii]
 gi|300603683|emb|CBK40014.1| putative NADH-quinone oxidoreductase, subunit G [Candidatus
           Nitrospira defluvii]
          Length = 902

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 23/60 (38%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              RCIAC  C  +C    +          G  + V      + C +CG C   CPV AI
Sbjct: 155 NMNRCIACAECINVCKDVLMIDALQFMKKGGFNQVVAKGDQPLACEFCGDCLAVCPVGAI 214


>gi|297538314|ref|YP_003674083.1| cyclic nucleotide-binding protein [Methylotenera sp. 301]
 gi|297257661|gb|ADI29506.1| cyclic nucleotide-binding protein [Methylotenera sp. 301]
          Length = 833

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 23/90 (25%), Gaps = 28/90 (31%)

Query: 59  GEERCIACKLCEAICPA----------QAITIESGPRCHDGTRRTVRYDIDMIK------ 102
            E  C+ C  CE  C             A  I +  R     R                 
Sbjct: 656 DESLCVRCNYCEDACADTHGGATRLDRDAGPIFANIRVPTSCRHCEHPHCMKDCPPDAIH 715

Query: 103 ------------CIYCGLCQEACPVDAIVE 120
                       CI CG CQ+ CP D I  
Sbjct: 716 RAPHGEVYIDDSCIGCGNCQQNCPYDVIQM 745



 Score = 35.1 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 26/94 (27%), Gaps = 21/94 (22%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
                 R  H      +    CI C  C+  CP   I +       + +   +   I   
Sbjct: 710 PPDAIHRAPHGEVYIDD---SCIGCGNCQQNCPYDVIQMAVIQDQPERSIWQILLGIQPK 766

Query: 102 ------------KCIYCG------LCQEACPVDA 117
                       KC  C       +C  ACPV A
Sbjct: 767 ALPIVGGSKVAVKCDMCKDIKEGPVCVRACPVGA 800


>gi|288940904|ref|YP_003443144.1| RnfABCDGE type electron transport complex subunit C [Allochromatium
           vinosum DSM 180]
 gi|288896276|gb|ADC62112.1| electron transport complex, RnfABCDGE type, C subunit
           [Allochromatium vinosum DSM 180]
          Length = 461

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 20/68 (29%), Gaps = 1/68 (1%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             CI C  C   CP        G          +    ++ +C  CG C   CP   I  
Sbjct: 378 YPCIKCGECLRACPVSLNPSMLGELAVAREYGVMAEQFNLDQCFECGCCAFVCP-SNIPL 436

Query: 121 GPNFEFAT 128
              F  A 
Sbjct: 437 TQYFRIAK 444


>gi|282936126|gb|ADB04320.1| putative NADH:acceptor oxidoreductase [bacterium enrichment culture
           clone N47]
 gi|308274032|emb|CBX30631.1| hypothetical protein N47_E41430 [uncultured Desulfobacterium sp.]
          Length = 840

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 22/81 (27%), Gaps = 5/81 (6%)

Query: 56  YPNGEERCIACKLCEAICPA---QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           Y      CI C  C   C +     +                   +    C +CG C E 
Sbjct: 188 YNRNFNLCIGCLRCVRACNSLRENDVLGFVVKDGRVIVGPKKAPMLREADCRFCGACVEV 247

Query: 113 CPVDAIVEGPNFEFATETRQE 133
           CP  A       +     R+E
Sbjct: 248 CPTGA--LTDKIKITESNREE 266


>gi|266623462|ref|ZP_06116397.1| putative 4Fe-4S binding domain protein [Clostridium hathewayi DSM
           13479]
 gi|288864757|gb|EFC97055.1| putative 4Fe-4S binding domain protein [Clostridium hathewayi DSM
           13479]
          Length = 203

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/79 (30%), Positives = 29/79 (36%), Gaps = 12/79 (15%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103
           S  + G           + CI C  C   CP + I               V   ID   C
Sbjct: 136 SFSYGGAKEEVSGYFITDDCIGCGQCTESCPQKCIAP------------GVPCRIDGSHC 183

Query: 104 IYCGLCQEACPVDAIVEGP 122
           + CGLCQE CPV A+ E  
Sbjct: 184 LRCGLCQEVCPVGAVAERN 202


>gi|260889594|ref|ZP_05900857.1| sulfite reductase, subunit C [Leptotrichia hofstadii F0254]
 gi|260861005|gb|EEX75505.1| sulfite reductase, subunit C [Leptotrichia hofstadii F0254]
          Length = 324

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 8/87 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +         G   + +    E +C++C +CE  C                + +  +
Sbjct: 147 CPNDCQKVRMHDFGIIGMAKPELDESKCVSCGMCERKC--------KKLSTGAISYKNYK 198

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGP 122
              D  +CI CG C   CP  A    P
Sbjct: 199 PVRDHQRCIGCGECVLNCPTGAWTRSP 225


>gi|188586757|ref|YP_001918302.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351444|gb|ACB85714.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 508

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 12/64 (18%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                E +C  CK+CE  CP  A+TIE+               +    C+ C  C   CP
Sbjct: 1   MIRVDEVKCKGCKVCEKTCPTNAVTIENKLA------------VINENCVGCNACVRVCP 48

Query: 115 VDAI 118
            DA+
Sbjct: 49  FDAM 52


>gi|163744663|ref|ZP_02152023.1| dihydropyrimidine dehydrogenase [Oceanibulbus indolifex HEL-45]
 gi|161381481|gb|EDQ05890.1| dihydropyrimidine dehydrogenase [Oceanibulbus indolifex HEL-45]
          Length = 437

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 8/82 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117
            ++ CI+C  C A C       E              + +   +C+ C LC   CPV D 
Sbjct: 343 DQDLCISCGRCFAAC-------EDTSHQAIAMSEDRTFTVIDEECVACNLCVNVCPVEDC 395

Query: 118 IVEGPNFEFATETRQELYYDKE 139
           I   P    AT+ R       +
Sbjct: 396 ISMEPLAAGATDLRTGKTVTPD 417


>gi|45357879|ref|NP_987436.1| indolepyruvate oxidoreductase subunit alpha 1 [Methanococcus
           maripaludis S2]
 gi|45047439|emb|CAF29872.1| indolepyruvate oxidoreductase subunit alpha 1 [Methanococcus
           maripaludis S2]
          Length = 612

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 17/88 (19%)

Query: 38  FEKGSTSPRFRGEHA-----LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              G ++  FRG         ++Y   + +CI CK+C       AIT+            
Sbjct: 533 EYNGPSAVVFRGNCVSLVKSDKKYVIDKNKCINCKICVERLGCPAITMNDEIPE------ 586

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVE 120
                  M  C  CGLC+  CP +A++E
Sbjct: 587 ------IMDNCTGCGLCKAVCPANAVIE 608


>gi|328954890|ref|YP_004372223.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Coriobacterium glomerans PW2]
 gi|328455214|gb|AEB06408.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Coriobacterium glomerans PW2]
          Length = 425

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 9/72 (12%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G    R        C  C  C  +CP  A  +              R+ ++   C+ CGL
Sbjct: 311 GNVVTRVPECDPASCTMCGECMKVCPTFACDLVGA---------NGRFAVEPTYCLGCGL 361

Query: 109 CQEACPVDAIVE 120
           C E C   A+  
Sbjct: 362 CAEVCEPHALTL 373


>gi|315186240|gb|EFU20001.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit
           [Spirochaeta thermophila DSM 6578]
          Length = 440

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 23/66 (34%), Gaps = 2/66 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           GEE CI C  C  +CP              G  R +        CI C LC   CP  AI
Sbjct: 363 GEEPCIHCSRCAQVCPRGLEPWLLHEALGRGDERLLSGGAIEG-CIGCNLCSFVCP-SAI 420

Query: 119 VEGPNF 124
                F
Sbjct: 421 PLADRF 426


>gi|262037225|ref|ZP_06010708.1| pyruvate-flavodoxin oxidoreductase [Leptotrichia goodfellowii
           F0264]
 gi|261748745|gb|EEY36101.1| pyruvate-flavodoxin oxidoreductase [Leptotrichia goodfellowii
           F0264]
          Length = 574

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/132 (17%), Positives = 34/132 (25%), Gaps = 33/132 (25%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E G+ +   RG           + CI C  C  +CP  AI                   I
Sbjct: 63  EHGTANYEKRGIAVEVPEWQ-PDMCIQCNQCAYVCPHAAIRPFLIDEKEMAAAPQGMPTI 121

Query: 99  D----------------MIKCIYCGLCQEACPVD---AIVE--------GPNFEFATE-- 129
                             + C  C  C + CP     AIV             E++    
Sbjct: 122 KALGRGFDNLQYKIQVSPLDCTGCTACVDVCPAPKGKAIVMKLIESQIERHEVEYSDYLY 181

Query: 130 ---TRQELYYDK 138
              + ++    K
Sbjct: 182 NEVSYKDHIMGK 193


>gi|255280972|ref|ZP_05345527.1| protein HymB [Bryantella formatexigens DSM 14469]
 gi|255268420|gb|EET61625.1| protein HymB [Bryantella formatexigens DSM 14469]
          Length = 626

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 35/89 (39%), Gaps = 12/89 (13%)

Query: 33  TINYPFEKGSTSPRFRGE--HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT 90
           T    +E+     + R +   A+RR+    E C  C  C   CP  AIT           
Sbjct: 545 TFRKEYEEHIVDKKCRAKVCQAMRRFVINPEYCKGCGKCAKNCPVGAITGV--------- 595

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            R   Y ID   CI C  C++ C  DAI 
Sbjct: 596 -RRECYHIDPNICIKCSACKDNCAFDAIY 623


>gi|225390319|ref|ZP_03760043.1| hypothetical protein CLOSTASPAR_04072 [Clostridium asparagiforme
           DSM 15981]
 gi|225043643|gb|EEG53889.1| hypothetical protein CLOSTASPAR_04072 [Clostridium asparagiforme
           DSM 15981]
          Length = 254

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 12/75 (16%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
            +R  +A   +P  ++ C  C  C A CP  AI+ E+ P    G            KCI 
Sbjct: 166 PYRAVNAPSAWPAADDACNRCGACAAACPVGAISRET-PNLTSG-----------DKCIN 213

Query: 106 CGLCQEACPVDAIVE 120
           C  C + CP  A   
Sbjct: 214 CMRCIQVCPRKARSM 228



 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 1/24 (4%)

Query: 101 IKCIYCGLCQEACPVDAI-VEGPN 123
             C  CG C  ACPV AI  E PN
Sbjct: 181 DACNRCGACAAACPVGAISRETPN 204


>gi|225016302|ref|ZP_03705494.1| hypothetical protein CLOSTMETH_00205 [Clostridium methylpentosum
           DSM 5476]
 gi|224950977|gb|EEG32186.1| hypothetical protein CLOSTMETH_00205 [Clostridium methylpentosum
           DSM 5476]
          Length = 1173

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 25/81 (30%), Gaps = 15/81 (18%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQ-----AITIESGPRCHDGT---------RRT 93
           RG           E CI C  C  +CP       A+T E      +G             
Sbjct: 678 RGVAVDVPTWI-PENCIQCNFCSYVCPHAVIRPAAMTEEEAANVPEGQLTAPMTGMPGMK 736

Query: 94  VRYDIDMIKCIYCGLCQEACP 114
               I ++ C  CG C   CP
Sbjct: 737 FAMTISVLDCTGCGSCINVCP 757


>gi|237809074|ref|YP_002893514.1| electron transport complex, RnfABCDGE type, B subunit [Tolumonas
           auensis DSM 9187]
 gi|237501335|gb|ACQ93928.1| electron transport complex, RnfABCDGE type, B subunit [Tolumonas
           auensis DSM 9187]
          Length = 183

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 24/73 (32%), Gaps = 12/73 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + C  C  C   C   AI          G  R +   I    C  CG C   CP + I
Sbjct: 106 DMDGCDGCGRCIKQCSYDAIV---------GATRQLHGVI-ADACTGCGACVAVCPHNGI 155

Query: 119 VEGPNFEFATETR 131
              P+   A  +R
Sbjct: 156 SLYPD--PAFMSR 166


>gi|222444426|ref|ZP_03606941.1| hypothetical protein METSMIALI_00037 [Methanobrevibacter smithii
           DSM 2375]
 gi|222433991|gb|EEE41156.1| hypothetical protein METSMIALI_00037 [Methanobrevibacter smithii
           DSM 2375]
          Length = 343

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 11/122 (9%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E     P F    + R++   +  CI CK C   CP  AI +E   +            +
Sbjct: 104 ENHLLKPEFNIIPSKRQFIIDDYLCIRCKKCMKQCPVGAIHVEDDGKVV----------V 153

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158
           +  KCI CG C + CPV+       F    + ++EL       L      + E +R++  
Sbjct: 154 NPFKCISCGECLDVCPVNG-AMKGVFVDNIQDQKELIAQVVTFLEKYINNKEEDLRSLKK 212

Query: 159 DS 160
           D 
Sbjct: 213 DR 214



 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 25/77 (32%), Gaps = 5/77 (6%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E      RFR           +E CI C  C + CP+            +         I
Sbjct: 24  EIVEKPSRFRNFP-----NVIKEYCIGCGACISSCPSPNAIKLVRDEDDETKEGITYPII 78

Query: 99  DMIKCIYCGLCQEACPV 115
           +   CI CG C E CP 
Sbjct: 79  NKSACIRCGFCAEVCPT 95



 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 5/76 (6%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR-----YDIDMIKCIYCG 107
           +      +  CI C  C  +CP +  T+E G          +      + ID   CI C 
Sbjct: 73  ITYPIINKSACIRCGFCAEVCPTEPKTLECGENHLLKPEFNIIPSKRQFIIDDYLCIRCK 132

Query: 108 LCQEACPVDAIVEGPN 123
            C + CPV AI    +
Sbjct: 133 KCMKQCPVGAIHVEDD 148



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 9/66 (13%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +R      E C  C++C   CP +AI+ +          +      +  KC+ C +C ++
Sbjct: 252 IRIIDWDSETCKKCQMCIPDCPTKAISFDE---------KNDTIVRNENKCLRCSICYQS 302

Query: 113 CPVDAI 118
           CP   I
Sbjct: 303 CPFSTI 308


>gi|213581398|ref|ZP_03363224.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 155

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 6/79 (7%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     +      +E+C+ C  C   C         G +  +    +     +  K
Sbjct: 68  IPAEDLDRSYIVYPRINQEKCVGCGRCYISCYDG------GHQAMEWDEHSHTPHCNTEK 121

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ C LC   CPV  I  G
Sbjct: 122 CVGCLLCGHVCPVACIDLG 140


>gi|167856055|ref|ZP_02478798.1| electron transport complex protein RnfB [Haemophilus parasuis
           29755]
 gi|167852804|gb|EDS24075.1| electron transport complex protein RnfB [Haemophilus parasuis
           29755]
          Length = 199

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 24/79 (30%), Gaps = 10/79 (12%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
                   E   +     EE CI C  C A CP  AI   +             + +   
Sbjct: 94  DVPETSGEEPVAKVAYIHEELCIGCTKCIAACPVDAIVGTNK----------AMHTVIAD 143

Query: 102 KCIYCGLCQEACPVDAIVE 120
            C  C LC   CP D I  
Sbjct: 144 FCTGCELCVAPCPTDCIEM 162



 Score = 37.0 bits (84), Expect = 0.79,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 14/39 (35%)

Query: 84  PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           P             I    CI C  C  ACPVDAIV   
Sbjct: 96  PETSGEEPVAKVAYIHEELCIGCTKCIAACPVDAIVGTN 134


>gi|134299710|ref|YP_001113206.1| NADH dehydrogenase (quinone) [Desulfotomaculum reducens MI-1]
 gi|134052410|gb|ABO50381.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Desulfotomaculum reducens MI-1]
          Length = 600

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 26/67 (38%), Gaps = 10/67 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L  Y    E+CI C +C   CP  AI  E                ID+  CI CG C + 
Sbjct: 542 LLVYTIDREKCIGCGICARSCPVGAIDGEKKQPHS----------IDIKACIKCGNCLQK 591

Query: 113 CPVDAIV 119
           C   A+ 
Sbjct: 592 CKFGAVQ 598



 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/40 (37%), Positives = 19/40 (47%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            I +           + Y ID  KCI CG+C  +CPV AI
Sbjct: 528 HIYNKRCPAGVCPNLLVYTIDREKCIGCGICARSCPVGAI 567


>gi|313672136|ref|YP_004050247.1| ferredoxin-dependent glutamate synthase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312938892|gb|ADR18084.1| ferredoxin-dependent glutamate synthase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 547

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 32/95 (33%), Gaps = 16/95 (16%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPR---------CHDGTRRTVRYDIDM--- 100
             +     +RC  C  C A CP +AI      R          +          I     
Sbjct: 15  FWQIEYKHDRCTMCGKCVASCPFKAIVPGVEKRRKVVSEDINPNPKVYFQTVPVIKQVVD 74

Query: 101 --IKCIYCGLCQEACPVDAIVEG--PNFEFATETR 131
               C  CG+C++ CP DAI     P+  F  + R
Sbjct: 75  VNNFCRGCGICEKVCPNDAIRPVRNPDHRFPAKYR 109


>gi|300870402|ref|YP_003785273.1| iron-sulfur cluster-binding protein [Brachyspira pilosicoli
           95/1000]
 gi|300688101|gb|ADK30772.1| iron-sulfur cluster-binding protein [Brachyspira pilosicoli
           95/1000]
          Length = 376

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 5/74 (6%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             + +    + +C+ C +C  +CP   + +    +      +    +    KCI C  CQ
Sbjct: 308 FIIPKPVIDKNKCVKCGVCVKVCPVTPLALNFDKKG-----KNYPPEYYYDKCITCYCCQ 362

Query: 111 EACPVDAIVEGPNF 124
           E CP  AI     F
Sbjct: 363 ELCPHKAIFLKRKF 376



 Score = 38.2 bits (87), Expect = 0.40,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFATET-RQELYYDK 138
           ID  KC+ CG+C + CPV  +    NF+   +    E YYDK
Sbjct: 315 IDKNKCVKCGVCVKVCPVTPLAL--NFDKKGKNYPPEYYYDK 354


>gi|268323322|emb|CBH36910.1| heterodisulfide reductase subunit A [uncultured archaeon]
          Length = 668

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 11/64 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  C+ C  CEAICP  A+++E+G              ++ + C  CG C+ ACP  AI
Sbjct: 598 DEGVCVGCGTCEAICPFDALSLEAG-----------VMHVNEVVCKGCGSCRSACPSGAI 646

Query: 119 VEGP 122
               
Sbjct: 647 TMRH 650



 Score = 33.5 bits (75), Expect = 9.3,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 29/92 (31%), Gaps = 17/92 (18%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES---------GPRCHDGTRRTVRY 96
            ++ +   +     E++C  C  C   C  +                          + Y
Sbjct: 226 NYKVKIRKKPRYVDEDKCTGCGECANACLLRGRVPNEFDTGLAKRAAIYVPFPQAVPLVY 285

Query: 97  DIDMIKCIY-----CG---LCQEACPVDAIVE 120
            +D  +CIY     CG    C EAC  DAI  
Sbjct: 286 TVDADRCIYITKGKCGKSPACIEACSADAIDF 317


>gi|283795361|ref|ZP_06344514.1| putative 4Fe-4S binding domain protein [Clostridium sp. M62/1]
 gi|291077019|gb|EFE14383.1| putative 4Fe-4S binding domain protein [Clostridium sp. M62/1]
 gi|295091066|emb|CBK77173.1| hypothetical protein [Clostridium cf. saccharolyticum K10]
          Length = 262

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 28/85 (32%), Gaps = 12/85 (14%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           AL       + CI C +C+ +CP     +E      +              CI C  C  
Sbjct: 169 ALSHMYQITDECIGCGICQKVCPKGCFHLEGQKSIWE-----------PAGCISCMACIH 217

Query: 112 ACPVDAIVEG-PNFEFATETRQELY 135
           ACP+ AI    P        R E  
Sbjct: 218 ACPMAAIHLTMPEKNPKARYRNENI 242


>gi|212704668|ref|ZP_03312796.1| hypothetical protein DESPIG_02731 [Desulfovibrio piger ATCC 29098]
 gi|212671902|gb|EEB32385.1| hypothetical protein DESPIG_02731 [Desulfovibrio piger ATCC 29098]
          Length = 653

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 7/64 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +RC+AC  C   CP  AIT           R   +  +    C  CG+C   CP  AI
Sbjct: 581 DNKRCVACGKCIRCCPFGAIT-------EVEFRGEKKAQVIETVCQGCGVCTSTCPQGAI 633

Query: 119 VEGP 122
               
Sbjct: 634 QLSH 637



 Score = 42.0 bits (97), Expect = 0.027,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 29/97 (29%), Gaps = 13/97 (13%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPA----QAITIESGP----RCHDGTRRTVRYD 97
            F  +   R        C  C  C   CP+     A    +GP              +  
Sbjct: 225 NFTVKIRKRATYVDWSLCTGCGACTEKCPSKKTPDAFNEFTGPTTAINIAFPQAIPKKAV 284

Query: 98  IDMIKCI-----YCGLCQEACPVDAIVEGPNFEFATE 129
           I+   C       CG+C + CP  AI      E  TE
Sbjct: 285 INPEYCRQMTKGKCGVCAKVCPTGAIKYDMQDEVITE 321


>gi|167751856|ref|ZP_02423983.1| hypothetical protein ALIPUT_00098 [Alistipes putredinis DSM 17216]
 gi|167660097|gb|EDS04227.1| hypothetical protein ALIPUT_00098 [Alistipes putredinis DSM 17216]
          Length = 305

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 30/86 (34%), Gaps = 11/86 (12%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            +P ++         +         +  CI C  CE +CP  AITI++            
Sbjct: 193 KWPKQRAVYVACVSKDKGAVVMKACKAGCIGCGKCEKVCPFGAITIQNNLAF-------- 244

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVE 120
              ID  KC  C  C   CP  AI  
Sbjct: 245 ---IDSWKCKLCRKCVNECPTGAIRL 267



 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 8/76 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHD--------GTRRTVRYDIDMIKCIYCGLCQ 110
             ++C AC  C   CP   I +                  +  V        CI CG C+
Sbjct: 169 DFDKCTACGACVKACPKSIIELRKKWPKQRAVYVACVSKDKGAVVMKACKAGCIGCGKCE 228

Query: 111 EACPVDAIVEGPNFEF 126
           + CP  AI    N  F
Sbjct: 229 KVCPFGAITIQNNLAF 244



 Score = 37.0 bits (84), Expect = 0.95,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 22/64 (34%), Gaps = 9/64 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C+    C  +C   AI I    R           ++D  KC  CG C +ACP   I
Sbjct: 138 CTYGCLGYGDCVTVCNFDAIAINPETRLP---------EVDFDKCTACGACVKACPKSII 188

Query: 119 VEGP 122
               
Sbjct: 189 ELRK 192


>gi|159905811|ref|YP_001549473.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C6]
 gi|159887304|gb|ABX02241.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           maripaludis C6]
          Length = 352

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 33/71 (46%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R    L      ++ C+ C +C   CPA+AI +                 +D+  C+YC 
Sbjct: 139 RKSLVLGEITIKKDACVLCGICAEYCPAEAIELIPNEMNALSLNPIADIRVDLDACVYCK 198

Query: 108 LCQEACPVDAI 118
           +C++ACP +AI
Sbjct: 199 VCEKACPHNAI 209



 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 8/95 (8%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPN-------GEERCIACKLCEAICPAQAITIESGPRCHD 88
            PF+    S   +    + +YP         + +C+ C+ CE +CP Q            
Sbjct: 81  CPFDAVKLSINDKPITEMPQYPKIKRGIELNQSKCVLCEQCELVCP-QCAIDVEREVPER 139

Query: 89  GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
            +       I    C+ CG+C E CP +AI   PN
Sbjct: 140 KSLVLGEITIKKDACVLCGICAEYCPAEAIELIPN 174



 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 34/89 (38%), Gaps = 5/89 (5%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
              R     R     +  C+ C +C  ICP  AI +        G     + DI   KC+
Sbjct: 14  EISRSGVEKRVLKWDDCTCVGCGICSEICPTSAIEMGPLGAIFKGDIDAPKLDIS-EKCV 72

Query: 105 YCGLCQEACPVDA----IVEGPNFEFATE 129
            CG+C  ACP DA    I + P  E    
Sbjct: 73  LCGMCACACPFDAVKLSINDKPITEMPQY 101



 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/101 (25%), Positives = 35/101 (34%), Gaps = 11/101 (10%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPN---GEERCIACKLCEAICPAQAITIE--------SGP 84
            P E     P      +L    +     + C+ CK+CE  CP  AI              
Sbjct: 164 CPAEAIELIPNEMNALSLNPIADIRVDLDACVYCKVCEKACPHNAIEAICYKCPLASKIK 223

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           +         + +ID   C+ CG C   CP DAI     FE
Sbjct: 224 KPELYKEIKGQTNIDKDLCVSCGWCANICPADAITVEKPFE 264



 Score = 40.9 bits (94), Expect = 0.064,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 8/83 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +  +    F GE  +      E  C AC  C ++CP  A+     PR      +   
Sbjct: 252 CPADAITVEKPFEGELII-----DEPACNACGACISVCPCNALVF---PRPVKQGDKVPN 303

Query: 96  YDIDMIKCIYCGLCQEACPVDAI 118
             ++   CI CG C  +CPVDA+
Sbjct: 304 VVVNQDVCILCGACTHSCPVDAL 326



 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 8/64 (12%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              ++ C++C  C  ICPA AIT+E                ID   C  CG C   CP +
Sbjct: 236 NIDKDLCVSCGWCANICPADAITVEKPFEGEL--------IIDEPACNACGACISVCPCN 287

Query: 117 AIVE 120
           A+V 
Sbjct: 288 ALVF 291



 Score = 39.3 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 5/84 (5%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC----HDGTRRTV 94
           E G     F+G+    +  +  E+C+ C +C   CP  A+ +    +         +   
Sbjct: 48  EMGPLGAIFKGDIDAPKL-DISEKCVLCGMCACACPFDAVKLSINDKPITEMPQYPKIKR 106

Query: 95  RYDIDMIKCIYCGLCQEACPVDAI 118
             +++  KC+ C  C+  CP  AI
Sbjct: 107 GIELNQSKCVLCEQCELVCPQCAI 130


>gi|294678804|ref|YP_003579419.1| electron transport complex protein RnfB [Rhodobacter capsulatus SB
           1003]
 gi|17380288|sp|Q07394|RNFB_RHOCA RecName: Full=Electron transport complex protein rnfB; AltName:
           Full=Nitrogen fixation protein rnfB
 gi|216928|dbj|BAA02787.1| ORFU3 product, potential iron-sulfur protein [Rhodobacter
           capsulatus]
 gi|435526|emb|CAA51400.1| rnfB [Rhodobacter capsulatus]
 gi|1905809|emb|CAA72669.1| RnfB protein [Rhodobacter capsulatus]
 gi|294477624|gb|ADE87012.1| electron transport complex protein RnfB [Rhodobacter capsulatus SB
           1003]
 gi|742356|prf||2009377C rnfB protein
          Length = 187

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 10/58 (17%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C  C+ C   CP  AI   +             + + M  CI C  C E CP +AI
Sbjct: 110 DHCTGCQKCFKRCPTDAIVGGAKQ----------IHTVVMDACIGCDACIEVCPTEAI 157


>gi|325972119|ref|YP_004248310.1| Fe-S cluster domain protein [Spirochaeta sp. Buddy]
 gi|324027357|gb|ADY14116.1| Fe-S cluster domain protein [Spirochaeta sp. Buddy]
          Length = 445

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 23/61 (37%), Gaps = 11/61 (18%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C  C  C   CP QAI I  G              ID   CI CG C   CP +AI    
Sbjct: 17  CKGCTHCMKRCPTQAIRIAKGKA-----------RIDNDLCIECGQCMAVCPNNAIAIEQ 65

Query: 123 N 123
           +
Sbjct: 66  D 66


>gi|319779888|ref|YP_004139364.1| formate dehydrogenase subunit alpha [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317165776|gb|ADV09314.1| formate dehydrogenase, alpha subunit [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 970

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T      G          +       +C+ CG C +
Sbjct: 182 YFTYDASQCIVCSRCVRACEEVQGTFALTIEGRGFESRVSAGMHEAFIDSECVSCGACVQ 241

Query: 112 ACPVDAIVE 120
           ACP DA+ E
Sbjct: 242 ACPTDALRE 250


>gi|319794266|ref|YP_004155906.1| formate dehydrogenase, alpha subunit [Variovorax paradoxus EPS]
 gi|315596729|gb|ADU37795.1| formate dehydrogenase, alpha subunit [Variovorax paradoxus EPS]
          Length = 957

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 5/65 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114
             + CI C  C   C  +    +       G    + +D    +    C+ CG C +ACP
Sbjct: 160 NLDACIQCNRCVRACREE-QVNDVIGYAFRGHDSAIVFDLQDGMGDSTCVACGECVQACP 218

Query: 115 VDAIV 119
             A++
Sbjct: 219 TGALM 223


>gi|261601245|gb|ACX90848.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           solfataricus 98/2]
          Length = 398

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 5/78 (6%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
            +R    +    +     IAC  C+     Q     +  +   G  R     I   KCI 
Sbjct: 32  NWRSLIVMTHGESKTALSIACNHCDNPTCMQVCPANAIEKNEMGIVR-----IRDDKCIG 86

Query: 106 CGLCQEACPVDAIVEGPN 123
           CG C  ACP +A+     
Sbjct: 87  CGFCTWACPYEALKFNNE 104



 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 4/91 (4%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
             + P            ++ +      +++CI C  C   CP +A+   +          
Sbjct: 54  HCDNPTCMQVCPANAIEKNEMGIVRIRDDKCIGCGFCTWACPYEALKFNNEGVMSKCHFC 113

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
             R  +   K I    C EACP  A+  G  
Sbjct: 114 YDR--LAEGKGI--PYCVEACPTGALAFGWI 140


>gi|256828296|ref|YP_003157024.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfomicrobium baculatum DSM 4028]
 gi|256577472|gb|ACU88608.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfomicrobium baculatum DSM 4028]
          Length = 144

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 9/62 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            EE C+ C LC A+CP++A+ +    R           D D  KC  C +C   CPV A+
Sbjct: 85  NEESCMHCGLCTALCPSKALHLNVETRLV---------DFDQDKCTACNMCVTVCPVRAM 135

Query: 119 VE 120
           + 
Sbjct: 136 IM 137


>gi|291286169|ref|YP_003502985.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290883329|gb|ADD67029.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 259

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 30/88 (34%), Gaps = 12/88 (13%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
            K  +N P   G+   +             +E+CI C  C+  CP  A+ I         
Sbjct: 155 KKGDMNIPDVPGNVPYKELALPKGATPKTDDEKCIICGACKKACPTGAMIIAE------- 207

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDA 117
                +   +   CI C  C + CP  A
Sbjct: 208 -----KVTSNPDLCIMCMACAKVCPRKA 230



 Score = 33.9 bits (76), Expect = 6.6,   Method: Composition-based stats.
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 101 IKCIYCGLCQEACPVDAIVE 120
            KCI CG C++ACP  A++ 
Sbjct: 186 EKCIICGACKKACPTGAMII 205


>gi|225568281|ref|ZP_03777306.1| hypothetical protein CLOHYLEM_04355 [Clostridium hylemonae DSM
           15053]
 gi|225163000|gb|EEG75619.1| hypothetical protein CLOHYLEM_04355 [Clostridium hylemonae DSM
           15053]
          Length = 88

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 11/65 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +E CIAC  C   CP  +I    G            + I    C  CG+C   CP +AI
Sbjct: 32  DQETCIACGTCLLYCPVNSIRKTDG-----------TFTICYDYCKGCGICAHECPKNAI 80

Query: 119 VEGPN 123
              P 
Sbjct: 81  TMIPE 85


>gi|298491065|ref|YP_003721242.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           ['Nostoc azollae' 0708]
 gi|298232983|gb|ADI64119.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein ['Nostoc
           azollae' 0708]
          Length = 394

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 33/98 (33%), Gaps = 11/98 (11%)

Query: 43  TSPRFRGEHALRRYPNGEERC-IAC-KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100
            S     +   R+       C + C + CE ICPAQAI   +      G        I  
Sbjct: 87  VSLNDGEDPHFRKAEFNASSCPVDCPRPCEKICPAQAIVFNNIKDSFSG--------IIA 138

Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
            KC  CG C   CP + I     +    E    L   K
Sbjct: 139 EKCYGCGRCIPVCPYEMINTTS-YISTPEAIAPLIMSK 175


>gi|254482990|ref|ZP_05096225.1| formate dehydrogenase, alpha subunit [marine gamma proteobacterium
           HTCC2148]
 gi|214036675|gb|EEB77347.1| formate dehydrogenase, alpha subunit [marine gamma proteobacterium
           HTCC2148]
          Length = 949

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 2/73 (2%)

Query: 55  RYPNGEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
            +     +CI C  C   C        +    R  D        D    +C+ CG C +A
Sbjct: 161 YFTFDPSKCIVCSRCVRACEETQGTFALTIEGRGFDSKVSAGGVDFLNSECVSCGACVDA 220

Query: 113 CPVDAIVEGPNFE 125
           CP   + E    E
Sbjct: 221 CPTATLTENSIIE 233


>gi|134299709|ref|YP_001113205.1| molybdopterin oxidoreductase Fe4S4 region [Desulfotomaculum
           reducens MI-1]
 gi|134052409|gb|ABO50380.1| molybdopterin oxidoreductase Fe4S4 region [Desulfotomaculum
           reducens MI-1]
          Length = 351

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 3/65 (4%)

Query: 59  GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115
              +CI C  C   C   Q   +         T+ T   D+ + K  C+YCG C   CPV
Sbjct: 144 DMNKCILCGKCIRACDEIQGNHVLDFAYRGFHTKITTAMDLPLSKSECVYCGNCVAVCPV 203

Query: 116 DAIVE 120
            A+ E
Sbjct: 204 GALQE 208


>gi|309388710|gb|ADO76590.1| dihydroorotate oxidase B, catalytic subunit [Halanaerobium
           praevalens DSM 2228]
          Length = 411

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 6/63 (9%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L      EE CI C  C   C         G +  +      + D+D  +C+ C LCQ+ 
Sbjct: 334 LILPEFDEELCIGCGRCYISCYDG------GHQALEWDSENRKPDLDEDQCVGCHLCQQV 387

Query: 113 CPV 115
           CPV
Sbjct: 388 CPV 390


>gi|309776546|ref|ZP_07671526.1| nitroreductase family protein fused to ferredoxin domain protein
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308915647|gb|EFP61407.1| nitroreductase family protein fused to ferredoxin domain protein
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 257

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 33/96 (34%), Gaps = 12/96 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + CI C LC   CPA  I ++                +    CI C  C   CP  A+
Sbjct: 9   DSKACIGCGLCVTDCPASNIVLQDKKAS-----------VIEDTCIMCSHCVAICPKHAV 57

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESEIVR 154
                 E + E    L  D + +L    R+   I +
Sbjct: 58  SITGFPEESVEKSTMLRLDPQEVLEV-IRFRRTIRQ 92



 Score = 34.7 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 12/25 (48%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           ID   CI CGLC   CP   IV   
Sbjct: 8   IDSKACIGCGLCVTDCPASNIVLQD 32


>gi|297183931|gb|ADI20052.1| hypothetical protein [uncultured alpha proteobacterium
           EB080_L11F12]
          Length = 919

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 5/65 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID----MIKCIYCGLCQEACP 114
             + CI C LC   C  +    +       G    + +D+D       C+ CG C +ACP
Sbjct: 147 NLDACIQCNLCVRACR-EVQVNDVIGLAGRGHDAKIVFDMDDPMGESSCVACGECVQACP 205

Query: 115 VDAIV 119
             A++
Sbjct: 206 TGALM 210


>gi|296109071|ref|YP_003616020.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus infernus ME]
 gi|295433885|gb|ADG13056.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus infernus ME]
          Length = 392

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 36/105 (34%), Gaps = 16/105 (15%)

Query: 29  KAKTTINYPFEKGSTSPRFRGEHALRRYP---------------NGEERCIACKLCEAIC 73
           K K  I  P E    +    G                         + +CI C +C   C
Sbjct: 122 KPKKKIEVPKEPIVVTDNCVGCKICIPECPVNAITFNEETNKVEIDKNKCIYCSICAQTC 181

Query: 74  PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           P  AI   +G       ++   + ++   C++C LC E CP + I
Sbjct: 182 PWNAIY-VAGKIPKKRRKKVKSFKVNEDSCVFCKLCVEICPGNMI 225



 Score = 40.9 bits (94), Expect = 0.067,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 3/61 (4%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             CI C  C   CP  A+ +    +     +   R +     C  CG C E CP+  +  
Sbjct: 304 RMCIVCGACTVACPTGALKL---GKIEHNGKEYNRIEYSPYLCDKCGKCVEVCPMKTLRL 360

Query: 121 G 121
            
Sbjct: 361 T 361



 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 25/75 (33%), Gaps = 3/75 (4%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
               N    CI C  C   CP  A++ E+        +   + +    KC  CG C E C
Sbjct: 25  IDIDNNFNTCILCFRCVEACPTGALSKET---LELNGKTLEKINYLPHKCKKCGTCAEVC 81

Query: 114 PVDAIVEGPNFEFAT 128
                     F ++ 
Sbjct: 82  STGIKKVDDQFPYSK 96



 Score = 38.5 bits (88), Expect = 0.27,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 1/83 (1%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESG-PRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           ++P  +  CI C  C  ICP   I++     +            +    C+ C +C   C
Sbjct: 91  QFPYSKGHCILCLKCVDICPIDIISLPGVIEKPKKKIEVPKEPIVVTDNCVGCKICIPEC 150

Query: 114 PVDAIVEGPNFEFATETRQELYY 136
           PV+AI            + +  Y
Sbjct: 151 PVNAITFNEETNKVEIDKNKCIY 173


>gi|269122188|ref|YP_003310365.1| NADH dehydrogenase (quinone) [Sebaldella termitidis ATCC 33386]
 gi|268616066|gb|ACZ10434.1| NADH dehydrogenase (quinone) [Sebaldella termitidis ATCC 33386]
          Length = 614

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 26/60 (43%), Gaps = 10/60 (16%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
             +CI C LC  ICP   IT     R          + ID  KCI CG C EAC   AI 
Sbjct: 563 NNKCIGCTLCARICPESCITGSPKQR----------HYIDAEKCIKCGSCYEACKFHAIN 612



 Score = 37.8 bits (86), Expect = 0.47,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 9/81 (11%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           E         +          +  ++Y I+  KCI C LC   CP   I   P       
Sbjct: 534 EKFWDEYVAHVRDKKCPSGQCKALIKYVIN-NKCIGCTLCARICPESCITGSP------- 585

Query: 130 TRQELYYDKERLLNNGDRWES 150
            +Q  Y D E+ +  G  +E+
Sbjct: 586 -KQRHYIDAEKCIKCGSCYEA 605


>gi|254446706|ref|ZP_05060181.1| electron transport complex, RnfABCDGE type, C subunit subfamily
           [Verrucomicrobiae bacterium DG1235]
 gi|198256131|gb|EDY80440.1| electron transport complex, RnfABCDGE type, C subunit subfamily
           [Verrucomicrobiae bacterium DG1235]
          Length = 456

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 2/73 (2%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             CI+C  C   CP      + G   +      ++    +  C  CG C   CP  +I  
Sbjct: 380 HPCISCGACVEACPMHLNPCQLGRLAYKSQYDEMQSSFHLNDCFECGSCSYVCP-SSIPL 438

Query: 121 GPNFEFATE-TRQ 132
              F  A    R+
Sbjct: 439 VQYFRIAKSANRE 451


>gi|169830372|ref|YP_001716354.1| hydrogenase, Fe-only [Candidatus Desulforudis audaxviator MP104C]
 gi|169637216|gb|ACA58722.1| hydrogenase, Fe-only [Candidatus Desulforudis audaxviator MP104C]
          Length = 523

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 24/75 (32%), Gaps = 10/75 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              +C  C  C  +C                        +D I CI CG C   CP  AI
Sbjct: 79  DHRKCNLCGQCLDVCR----------NTQSVVGYYDLPLVDEIICINCGQCALVCPTGAI 128

Query: 119 VEGPNFEFATETRQE 133
            E  + E   +  ++
Sbjct: 129 SERDDTEKVWQALED 143


>gi|149912039|ref|ZP_01900632.1| Electron transport complex protein rnfB [Moritella sp. PE36]
 gi|149804900|gb|EDM64935.1| Electron transport complex protein rnfB [Moritella sp. PE36]
          Length = 182

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 27/84 (32%), Gaps = 10/84 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E    + +             EE CI C  C   CP  AI   +             + +
Sbjct: 91  EVKPIAEQEHDASIKMVARIIEEDCIGCTKCIQACPVDAIAGAT----------RAMHTV 140

Query: 99  DMIKCIYCGLCQEACPVDAIVEGP 122
            +  C  C LC   CP D IV  P
Sbjct: 141 IVDSCTGCKLCVAPCPTDCIVMEP 164


>gi|158520578|ref|YP_001528448.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfococcus oleovorans Hxd3]
 gi|158509404|gb|ABW66371.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus
           oleovorans Hxd3]
          Length = 298

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 22/68 (32%), Gaps = 10/68 (14%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            +    C AC  C + C   AIT +                     C+ CGLC E CP  
Sbjct: 224 DHDPALCTACGTCISGCMFDAITADENGAPVYNR----------DACMGCGLCVEHCPRQ 273

Query: 117 AIVEGPNF 124
           A      F
Sbjct: 274 ARSLNKEF 281


>gi|114769565|ref|ZP_01447175.1| formate dehydrogenase, alpha subunit [alpha proteobacterium
           HTCC2255]
 gi|114549270|gb|EAU52152.1| formate dehydrogenase, alpha subunit [alpha proteobacterium
           HTCC2255]
          Length = 919

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 5/65 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID----MIKCIYCGLCQEACP 114
             + CI C LC   C  +    +       G    + +D+D       C+ CG C +ACP
Sbjct: 147 NLDACIQCNLCVRACR-EVQVNDVIGLAGRGHDAKIVFDMDDPMGESSCVACGECVQACP 205

Query: 115 VDAIV 119
             A++
Sbjct: 206 TGALM 210


>gi|11498973|ref|NP_070206.1| heterodisulfide reductase, subunit A (hdrA-2) [Archaeoglobus
           fulgidus DSM 4304]
 gi|2649195|gb|AAB89867.1| heterodisulfide reductase, subunit A (hdrA-2) [Archaeoglobus
           fulgidus DSM 4304]
          Length = 659

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 18/75 (24%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ C  C +C + CP +AI+               R ++D  +C  CG+C   CP +A+
Sbjct: 594 DEKLCTGCGICASACPYEAIS------------VNGRAEVDTRRCKGCGICSSVCPANAV 641

Query: 119 VEGPNFEFATETRQE 133
                 + A  TR++
Sbjct: 642 ------DLAGFTREQ 650



 Score = 40.9 bits (94), Expect = 0.065,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
           R  +  +D  KCI CG C EACP  A+ E   F      R+ +Y 
Sbjct: 229 RKKQTYVDWDKCIGCGACVEACPPRAVTE-DEFNEGLTKRRAMYI 272



 Score = 38.2 bits (87), Expect = 0.35,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 36/119 (30%), Gaps = 27/119 (22%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES---------GPRCHD 88
            E   +   F+ +   ++     ++CI C  C   CP +A+T +                
Sbjct: 215 EEVKGSVGNFQVKIRKKQTYVDWDKCIGCGACVEACPPRAVTEDEFNEGLTKRRAMYIAS 274

Query: 89  GTRRTVRYDIDMIKCIYCGL------------------CQEACPVDAIVEGPNFEFATE 129
                 +   D   C+ CG                   C++ACP  AI     +    E
Sbjct: 275 PYAIPRKAVHDPKSCVNCGKKTLGTRRFLRGGKEYLAPCEKACPTGAINRSLEWNPEGE 333


>gi|84685011|ref|ZP_01012910.1| benzoyl-CoA oxygenase, A subunit [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84666743|gb|EAQ13214.1| benzoyl-CoA oxygenase, A subunit [Rhodobacterales bacterium
           HTCC2654]
          Length = 397

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 11/68 (16%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L+++    E CI C  CE  CP +AIT                  +D  KC +C  C   
Sbjct: 5   LKQHLIDPEICIRCYTCEMTCPIEAITHNDDNVV-----------VDAEKCNFCMDCIPV 53

Query: 113 CPVDAIVE 120
           CP  +I E
Sbjct: 54  CPTGSIDE 61


>gi|329765826|ref|ZP_08257392.1| putative ATPase RIL [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329137669|gb|EGG41939.1| putative ATPase RIL [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 595

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +E C   K C   C       +SG  C      + +  ID   C  CG+C + CP +AI
Sbjct: 9   DKELCQP-KKCGLECIKYCPVNKSGADCIILNEESKKAQIDENVCNGCGICVKVCPFEAI 67

Query: 119 VEGP 122
               
Sbjct: 68  TIVN 71


>gi|296102657|ref|YP_003612803.1| electron transport complex protein RnfC [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295057116|gb|ADF61854.1| electron transport complex protein RnfC [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 607

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/111 (22%), Positives = 38/111 (34%), Gaps = 15/111 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ CI C  C   CPA  +  +       G         ++  CI CG C   CP    
Sbjct: 373 EEKGCIRCSACADACPAD-LLPQQLYWYSKGQLHDKAQAHNLADCIECGACAWVCP---- 427

Query: 119 VEGPNFEFATETRQE------LYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
               N       RQE      +  +++R      R+E+   R +  +   R
Sbjct: 428 ---SNIPLVQYFRQEKAEIYAISMEEKRAAEAKARFEARQAR-LEREKLAR 474


>gi|270262058|ref|ZP_06190330.1| hypothetical protein SOD_b02650 [Serratia odorifera 4Rx13]
 gi|270043934|gb|EFA17026.1| hypothetical protein SOD_b02650 [Serratia odorifera 4Rx13]
          Length = 1177

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/117 (15%), Positives = 26/117 (22%), Gaps = 24/117 (20%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A        + C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSAFPPDGTWPVGTTQWEKRNIAETIPLWQPDLCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACP 114
           P  AI  +                          +     +    C  C LC E CP
Sbjct: 700 PHSAIRAKVVQPQAMEHAPASLQSLDVKARDMRGQKYVLQVAPEDCTGCNLCVEVCP 756


>gi|227540820|ref|ZP_03970869.1| possible Fe-S dehydrogenase [Corynebacterium glucuronolyticum ATCC
           51866]
 gi|227183352|gb|EEI64324.1| possible Fe-S dehydrogenase [Corynebacterium glucuronolyticum ATCC
           51866]
          Length = 892

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 21/59 (35%), Gaps = 2/59 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRT--VRYDIDMIKCIYCGLCQEACPV 115
               C  C  C+ +CPA        PR      R      D  +  C  CG C E CPV
Sbjct: 284 DAHTCTECNRCQDLCPAWNTGKPLSPRKVITDIRDGLEITDDVLWSCTNCGACVEQCPV 342


>gi|210630476|ref|ZP_03296479.1| hypothetical protein COLSTE_00364 [Collinsella stercoris DSM 13279]
 gi|210160478|gb|EEA91449.1| hypothetical protein COLSTE_00364 [Collinsella stercoris DSM 13279]
          Length = 421

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 10/64 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               ++C  C  C A CP  A  + +  +          + ++   CI CGLC E C   
Sbjct: 316 ECDHDKCTMCGDCVAACPVFACDLTANGK----------FTVEPTYCIGCGLCTEVCGDR 365

Query: 117 AIVE 120
           A+  
Sbjct: 366 ALKM 369



 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 17/38 (44%)

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           R    + D  KC  CG C  ACPV A     N +F  E
Sbjct: 311 RVQLPECDHDKCTMCGDCVAACPVFACDLTANGKFTVE 348



 Score = 35.5 bits (80), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 2/56 (3%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
            CI C  C++   +           +         D+ +  C  CGLC  +CP +A
Sbjct: 55  NCIPCLACKS-DKSGCRACIDVCPVNAIEIEDGAIDV-LDSCRKCGLCVASCPTEA 108


>gi|254167893|ref|ZP_04874742.1| 4Fe-4S binding domain protein [Aciduliprofundum boonei T469]
 gi|197623184|gb|EDY35750.1| 4Fe-4S binding domain protein [Aciduliprofundum boonei T469]
          Length = 1052

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 21/64 (32%), Gaps = 9/64 (14%)

Query: 59   GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               RC  C +C   C A A  I+                +    C+ C  C  ACP  A 
Sbjct: 983  NPRRCAGCGICVDACFAGARYIDEEDHIA---------KVRTELCVGCAACANACPSGAA 1033

Query: 119  VEGP 122
            V  P
Sbjct: 1034 VVMP 1037



 Score = 35.5 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 16/40 (40%)

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E GP       +     ++  KCI C LC E C V  I  
Sbjct: 40  EGGPGNFKARFKHRPQSVNEFKCIGCDLCHEKCDVKFIPM 79



 Score = 33.9 bits (76), Expect = 7.5,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 30/103 (29%), Gaps = 29/103 (28%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103
              F+     R     E +CI C LC   C  + I +  GP    G R     +      
Sbjct: 43  PGNFKARFKHRPQSVNEFKCIGCDLCHEKCDVKFIPMPLGP----GMRIIKNAE------ 92

Query: 104 IYCGLCQEACPVDAIV---------------EGPNFEFATETR 131
                C + CPV AI                  P +E     R
Sbjct: 93  ----ECLDVCPVKAIQIPKEEEKEEKVDAVILSPEYEPEDIKR 131


>gi|153940224|ref|YP_001389380.1| iron-sulfur cluster-binding protein [Clostridium botulinum F str.
           Langeland]
 gi|152936120|gb|ABS41618.1| iron-sulfur cluster-binding protein [Clostridium botulinum F str.
           Langeland]
 gi|295317487|gb|ADF97864.1| iron-sulfur cluster-binding protein [Clostridium botulinum F str.
           230613]
          Length = 387

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           E+CI C  C  +CP +   I+   +             +M KCI C  CQE CP  AI
Sbjct: 319 EKCIGCNRCAEVCPEKPYVIDMIKKGDKKIPVW-----NMKKCIRCFCCQELCPKGAI 371


>gi|254250832|ref|ZP_04944151.1| Dihydroorotate dehydrogenase 1 [Burkholderia cenocepacia PC184]
 gi|124879966|gb|EAY67322.1| Dihydroorotate dehydrogenase 1 [Burkholderia cenocepacia PC184]
          Length = 508

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 6/63 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117
            ++RCI C LC   C   +    +  +          +++   +C+ C LC   CPV   
Sbjct: 412 DQDRCIQCGLCHIACEDTSHQAITATKDGV-----RHFEVIDSECVGCNLCMHVCPVEQC 466

Query: 118 IVE 120
           I  
Sbjct: 467 ITM 469


>gi|189346229|ref|YP_001942758.1| glutamate synthase (NADPH) small subunit [Chlorobium limicola DSM
           245]
 gi|189340376|gb|ACD89779.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chlorobium
           limicola DSM 245]
          Length = 577

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 6/59 (10%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           C  CK C + CP +A+T                   +  +C+ C +C   CP   I  G
Sbjct: 520 CFDCKQCVSFCPQEAVTRLRDNPPG------EVVYTNYSRCVGCHICSLVCPSGYIQMG 572


>gi|125972722|ref|YP_001036632.1| glutamate synthase (NADPH) GltB2 subunit [Clostridium thermocellum
           ATCC 27405]
 gi|281416909|ref|ZP_06247929.1| Glutamate synthase (NADPH) [Clostridium thermocellum JW20]
 gi|125712947|gb|ABN51439.1| glutamate synthase (NADPH) GltB2 subunit [Clostridium thermocellum
           ATCC 27405]
 gi|281408311|gb|EFB38569.1| Glutamate synthase (NADPH) [Clostridium thermocellum JW20]
          Length = 501

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 9/64 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +RCI C++CE  C  +  + +   +                KC+ C  C   CP  A+
Sbjct: 15  NMDRCINCRVCERQCANEVHSYDQEKKIMCSD---------DSKCVNCHRCVALCPTRAL 65

Query: 119 VEGP 122
               
Sbjct: 66  KIVK 69


>gi|319793126|ref|YP_004154766.1| glutamate synthase (nadph) [Variovorax paradoxus EPS]
 gi|315595589|gb|ADU36655.1| Glutamate synthase (NADPH) [Variovorax paradoxus EPS]
          Length = 599

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 28/95 (29%), Gaps = 20/95 (21%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR--------------------CH 87
           R  +   +    E  CI C  C  ICP   I+  +                         
Sbjct: 491 RCLNCDVQTVFNEPACIECDACVDICPMDCISFTANGEEAELRTRLKAPALNLTQDLYVS 550

Query: 88  DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            G +       D   C++CGLC E CP  A     
Sbjct: 551 GGLKTGRVMVKDEDVCLHCGLCAERCPTGAWDMQK 585



 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 18/60 (30%), Gaps = 2/60 (3%)

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
            E      A T                ++     CI C  C + CP+D I    N E A 
Sbjct: 474 VEVELGFDAATAFKEAERCLNCDVQTVFN--EPACIECDACVDICPMDCISFTANGEEAE 531


>gi|309777308|ref|ZP_07672270.1| Fe-hydrogenase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914988|gb|EFP60766.1| Fe-hydrogenase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 576

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 38/100 (38%), Gaps = 6/100 (6%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVR 95
           P+EK      +     L R  N   +CI C  C  IC   Q + +         T   V 
Sbjct: 122 PYEKKVVYTPWNQTFPLIRESN---KCIKCMRCIQICDKVQNLQVWDVQNTGSRTTVNVS 178

Query: 96  YD--IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
            +  I+   C  CG C   CPV+A+    + E A +   +
Sbjct: 179 LNRSIEEADCSLCGQCITHCPVNALHVREDSERAFDALND 218


>gi|295094493|emb|CBK83584.1| Coenzyme F420-reducing hydrogenase, beta subunit [Coprococcus sp.
           ART55/1]
          Length = 856

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 8/104 (7%)

Query: 28  FKAKTTINYPFEKG--STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
           F+ + +     E+         R +          + C  C  C ++CP  AI+++    
Sbjct: 88  FEKQESARQREEERVEWRKKAVRRDSDKTVGCIHPDYCCGCGACYSVCPVNAISMKYDSE 147

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
                   +   +D  KC  CGLC++ CP   +      E A  
Sbjct: 148 G------FLAPVVDRSKCTNCGLCRKICPSINLEYKNTVEPACY 185


>gi|268323917|emb|CBH37505.1| putative Fe-only hydrogenase [uncultured archaeon]
          Length = 569

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 59  GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115
              +CI C  C  +C   Q +++         T      D  +    C  CG C  ACPV
Sbjct: 142 DPNKCILCGRCIRVCHDVQTVSVIGFVNRGPDTMVATVLDEGLGNVECTNCGQCIHACPV 201

Query: 116 DAIVEGP 122
            AI E P
Sbjct: 202 GAIKEKP 208


>gi|18978168|ref|NP_579525.1| putative polyferredoxin [Pyrococcus furiosus DSM 3638]
 gi|18893975|gb|AAL81920.1| putative polyferredoxin [Pyrococcus furiosus DSM 3638]
          Length = 167

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/131 (22%), Positives = 45/131 (34%), Gaps = 15/131 (11%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
           Y  +   T +  F         R        P   ++ I C  C+ ICP  A+ ++    
Sbjct: 6   YLRRGYITPDELFSIIPRPSEERLRKRPVAIPECPQQ-IPCTPCKEICPVNAVMMD---- 60

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNG 145
                       +D  KCI C LC + CP  A           + R  + Y+   LL   
Sbjct: 61  -----HPNDIPKVDYEKCIGCSLCVQVCPGLAFFM--IHYVGDKARITMPYE---LLPLP 110

Query: 146 DRWESEIVRNI 156
           ++ E  I+ N 
Sbjct: 111 EKGEEVILLNR 121


>gi|51244192|ref|YP_064076.1| iron-sulfur cluster binding protein [Desulfotalea psychrophila
           LSv54]
 gi|50875229|emb|CAG35069.1| related to iron-sulfur cluster binding protein [Desulfotalea
           psychrophila LSv54]
          Length = 299

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 14/61 (22%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           +++CI+C  C  +C   AI+ +              + +D I C  CG+C + CP  AI 
Sbjct: 65  QDKCISCGTCRDLCKFGAISED--------------FVVDPIGCEGCGICVDFCPEQAIE 110

Query: 120 E 120
            
Sbjct: 111 F 111


>gi|325661153|ref|ZP_08149780.1| hypothetical protein HMPREF0490_00513 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472660|gb|EGC75871.1| hypothetical protein HMPREF0490_00513 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 263

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 31/83 (37%), Gaps = 11/83 (13%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P+E          E            CI C++C+ +CPA AI +E+             
Sbjct: 191 VPYEAKHLVQCSSKEKGKDVMAVCSTGCIGCRMCQKVCPADAIVVENNLA---------- 240

Query: 96  YDIDMIKCIYCGLCQEACPVDAI 118
             ID  KC  CG C E CP   I
Sbjct: 241 -WIDPEKCTNCGACAEKCPKKII 262



 Score = 38.5 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 5/70 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCH-----DGTRRTVRYDIDMIKCIYCGLCQEAC 113
            +E C AC  C   CP   I +      H        +      +    CI C +CQ+ C
Sbjct: 169 DKEACKACGKCIKACPKNLIELVPYEAKHLVQCSSKEKGKDVMAVCSTGCIGCRMCQKVC 228

Query: 114 PVDAIVEGPN 123
           P DAIV   N
Sbjct: 229 PADAIVVENN 238



 Score = 34.3 bits (77), Expect = 5.5,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 11/66 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            + +  C     C   CP  AI I  G              +D   C  CG C +ACP +
Sbjct: 138 KSCDYGCCGFGTCVKACPFDAIHIVDGVAV-----------VDKEACKACGKCIKACPKN 186

Query: 117 AIVEGP 122
            I   P
Sbjct: 187 LIELVP 192


>gi|307689027|ref|ZP_07631473.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
          Length = 436

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 34/99 (34%), Gaps = 16/99 (16%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            L+YF       +   E         G           + C  C  C  +C   AI  + 
Sbjct: 354 TLKYF------RHEYEEHIKYKKCVAGVCNALVKYYITDDCKGCTKCMNVCAVDAINGQ- 406

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
                       R+ ID  KCI CG C++ C  DAI++ 
Sbjct: 407 ---------VRSRHIIDADKCIRCGACRKICSFDAIIKT 436


>gi|301060589|ref|ZP_07201424.1| putative NAD-dependent formate dehydrogenase, beta subunit [delta
           proteobacterium NaphS2]
 gi|300445292|gb|EFK09222.1| putative NAD-dependent formate dehydrogenase, beta subunit [delta
           proteobacterium NaphS2]
          Length = 584

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 10/68 (14%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           AL ++   EE C  C  C   CP +AI+ E                +D  KCI C  C +
Sbjct: 527 ALIKFEFIEENCTKCGQCFKACPVEAISWEKKQYPV----------LDKEKCIKCKTCID 576

Query: 112 ACPVDAIV 119
           AC  +AI 
Sbjct: 577 ACNFEAIQ 584



 Score = 40.5 bits (93), Expect = 0.080,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 8/62 (12%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
            I             ++++     C  CG C +ACPV+AI        + E +Q    DK
Sbjct: 514 HIRDHVCPSRVCTALIKFEFIEENCTKCGQCFKACPVEAI--------SWEKKQYPVLDK 565

Query: 139 ER 140
           E+
Sbjct: 566 EK 567


>gi|326790371|ref|YP_004308192.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Clostridium lentocellum DSM 5427]
 gi|326541135|gb|ADZ82994.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Clostridium lentocellum DSM 5427]
          Length = 575

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 22/64 (34%), Gaps = 12/64 (18%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            +   +E CI C +C  +       I  G              I+   C  CGLC   CP
Sbjct: 519 NFDINDETCIKCGMCLKL---GCPAICKGEEG---------ISINTALCAGCGLCASVCP 566

Query: 115 VDAI 118
             AI
Sbjct: 567 KQAI 570



 Score = 34.7 bits (78), Expect = 4.8,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 3/44 (6%)

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE-ACPVDAIVEGPN 123
              P       +   +DI+   CI CG+C +  CP  AI +G  
Sbjct: 505 TKAPCKLIIKEKWANFDINDETCIKCGMCLKLGCP--AICKGEE 546


>gi|294496437|ref|YP_003542930.1| glutamate synthase (NADPH) GltB2 subunit [Methanohalophilus mahii
           DSM 5219]
 gi|292667436|gb|ADE37285.1| glutamate synthase (NADPH) GltB2 subunit [Methanohalophilus mahii
           DSM 5219]
          Length = 504

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 17/86 (19%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               ++C+ C  C   C       E                ID  KC  C  C   CP D
Sbjct: 13  QIDRQQCMQCMRCVDNCSYGVFREEDDGNIL----------IDSRKCTACHRCISMCPRD 62

Query: 117 AIVEGP---NFE----FATETRQELY 135
           AI       ++     +  E R+++ 
Sbjct: 63  AINLSERPVDYRSHPLWTPEAREDVI 88


>gi|291563209|emb|CBL42025.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta
           subunits [butyrate-producing bacterium SS3/4]
          Length = 279

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 27/88 (30%), Gaps = 13/88 (14%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P E    +  ++    L       + C+ C  C   CP  AI+ E     +        
Sbjct: 183 CPVE-VPGNRTYKEYKVLPMDIQVSDECMGCGSCAESCPVGAISFEDPKMTNG------- 234

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                  CI C  C E CP  A    P 
Sbjct: 235 -----EACISCMRCVEICPQSARSGNPE 257


>gi|295400793|ref|ZP_06810769.1| dihydroorotate dehydrogenase family protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|312111355|ref|YP_003989671.1| dihydroorotate dehydrogenase [Geobacillus sp. Y4.1MC1]
 gi|294977056|gb|EFG52658.1| dihydroorotate dehydrogenase family protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|311216456|gb|ADP75060.1| dihydroorotate dehydrogenase family protein [Geobacillus sp.
           Y4.1MC1]
          Length = 422

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 6/58 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            E++C+ C  C   C   A       +       T +  I    C+ C LC   CPV 
Sbjct: 341 DEDKCVGCGRCYVSCFDGAH------QAIVWDSETRKPRILEDHCVGCHLCLNVCPVY 392


>gi|50121205|ref|YP_050372.1| electron transport complex protein RnfB [Pectobacterium
           atrosepticum SCRI1043]
 gi|81693264|sp|Q6D4W3|RNFB_ERWCT RecName: Full=Electron transport complex protein rnfB; AltName:
           Full=Nitrogen fixation protein rnfB
 gi|49611731|emb|CAG75180.1| electron transport complex protein [Pectobacterium atrosepticum
           SCRI1043]
          Length = 192

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 22/73 (30%), Gaps = 10/73 (13%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            A       E  CI C  C   CP  AI   +             + +    C  C LC 
Sbjct: 105 PARHVAWIDESNCIGCTKCIQACPVDAIIGSTK----------AVHTVVSDLCTGCDLCI 154

Query: 111 EACPVDAIVEGPN 123
             CP D I   P 
Sbjct: 155 SPCPTDCIELRPI 167


>gi|146277498|ref|YP_001167657.1| dihydropyrimidine dehydrogenase [Rhodobacter sphaeroides ATCC
           17025]
 gi|145555739|gb|ABP70352.1| dihydrouracil dehydrogenase (NAD+) / dihydropyrimidine
           dehydrogenase (NADP+) [Rhodobacter sphaeroides ATCC
           17025]
          Length = 434

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 8/76 (10%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI C  C A C       E              + +   +C+ 
Sbjct: 330 QYLNLNYVTKAQIDQDLCIKCGRCYAAC-------EDTSHQAIAMSPDRIFSVKDEECVA 382

Query: 106 CGLCQEACPV-DAIVE 120
           C LC + CPV + I  
Sbjct: 383 CNLCVDVCPVENCITM 398


>gi|146296316|ref|YP_001180087.1| hypothetical protein Csac_1294 [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145409892|gb|ABP66896.1| protein of unknown function DUF362 [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 375

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 11/66 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI C  C   CPAQAI ++S               +D+ KCI C  C E CP  AI
Sbjct: 314 DRNACIGCAECFNACPAQAIEMKSRKAY-----------VDLKKCIRCYCCHELCPAKAI 362

Query: 119 VEGPNF 124
           +   +F
Sbjct: 363 MIKRSF 368


>gi|308049499|ref|YP_003913065.1| D-lactate dehydrogenase (cytochrome) [Ferrimonas balearica DSM
           9799]
 gi|307631689|gb|ADN75991.1| D-lactate dehydrogenase (cytochrome) [Ferrimonas balearica DSM
           9799]
          Length = 938

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 12/57 (21%), Positives = 21/57 (36%)

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
           +     I  E         ++    D  + +CI CG C++ CP  ++   P     T
Sbjct: 511 LLNPGVILNEDSEIHIKAIKQAAVVDDWVDRCIECGFCEKTCPTSSLNMSPRHRITT 567



 Score = 37.4 bits (85), Expect = 0.64,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 24/71 (33%), Gaps = 16/71 (22%)

Query: 61  ERCIACKLCEAICPAQ----------------AITIESGPRCHDGTRRTVRYDIDMIKCI 104
           +RCI C  CE  CP                  A   +SG +      R       +  C 
Sbjct: 540 DRCIECGFCEKTCPTSSLNMSPRHRITTLREIARLEQSGEQAAAQQMREAAQYDVIDTCT 599

Query: 105 YCGLCQEACPV 115
            C LC  ACPV
Sbjct: 600 ACQLCTIACPV 610


>gi|297184237|gb|ADI20355.1| uncharacterized anaerobic dehydrogenase [uncultured alpha
           proteobacterium EB080_L27A02]
          Length = 919

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 5/65 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID----MIKCIYCGLCQEACP 114
             + CI C LC   C  +    +       G    + +D+D       C+ CG C +ACP
Sbjct: 147 NLDACIQCNLCVRACR-EVQVNDVIGLAGRGHDAKIVFDMDDPMGESSCVACGECVQACP 205

Query: 115 VDAIV 119
             A++
Sbjct: 206 TGALM 210


>gi|269121613|ref|YP_003309790.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sebaldella
           termitidis ATCC 33386]
 gi|268615491|gb|ACZ09859.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sebaldella
           termitidis ATCC 33386]
          Length = 57

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/65 (40%), Positives = 31/65 (47%), Gaps = 11/65 (16%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
             Y   +E CIAC  CE +CP +AI    G            Y ID   CI CG C+  C
Sbjct: 1   MAYSINKETCIACGACEGVCPVEAIAEADGK-----------YAIDGATCIDCGACEGVC 49

Query: 114 PVDAI 118
           PV+AI
Sbjct: 50  PVEAI 54


>gi|255524301|ref|ZP_05391259.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7]
 gi|296185258|ref|ZP_06853668.1| protein HymB [Clostridium carboxidivorans P7]
 gi|255511984|gb|EET88266.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7]
 gi|296050092|gb|EFG89516.1| protein HymB [Clostridium carboxidivorans P7]
          Length = 626

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 10/67 (14%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           AL +Y    ++CI C  C  +CP +AI+ E              + I+  KCI CG C  
Sbjct: 567 ALLKYSIDPKKCIGCTACTKVCPTKAISGEVKKA----------HVINKEKCINCGACSS 616

Query: 112 ACPVDAI 118
            C   +I
Sbjct: 617 TCKFSSI 623



 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 9/72 (12%)

Query: 70  EAICPAQAITIESGPRCHDG-TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
                 + ++      C  G     ++Y ID  KCI C  C + CP  AI        + 
Sbjct: 544 MKFFWDEYVSHVKDKHCPAGVCTALLKYSIDPKKCIGCTACTKVCPTKAI--------SG 595

Query: 129 ETRQELYYDKER 140
           E ++    +KE+
Sbjct: 596 EVKKAHVINKEK 607


>gi|225389522|ref|ZP_03759246.1| hypothetical protein CLOSTASPAR_03270 [Clostridium asparagiforme
           DSM 15981]
 gi|225044423|gb|EEG54669.1| hypothetical protein CLOSTASPAR_03270 [Clostridium asparagiforme
           DSM 15981]
          Length = 716

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 21/81 (25%), Gaps = 15/81 (18%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG        N  + CI C  C  +CP               +A                
Sbjct: 218 RGIAVKVPVWN-PDNCIQCNFCAYVCPHAVIRPAVLSADEAAKAPADMKLKDMTGMPGYK 276

Query: 94  VRYDIDMIKCIYCGLCQEACP 114
               +  + C  CG C   CP
Sbjct: 277 FAITVSALDCTGCGSCANVCP 297


>gi|116054170|ref|YP_788613.1| dihydropyrimidine dehydrogenase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|254237329|ref|ZP_04930652.1| hypothetical protein PACG_03400 [Pseudomonas aeruginosa C3719]
 gi|254243537|ref|ZP_04936859.1| hypothetical protein PA2G_04355 [Pseudomonas aeruginosa 2192]
 gi|115589391|gb|ABJ15406.1| putative dihydroorotate dehydrogenase [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|126169260|gb|EAZ54771.1| hypothetical protein PACG_03400 [Pseudomonas aeruginosa C3719]
 gi|126196915|gb|EAZ60978.1| hypothetical protein PA2G_04355 [Pseudomonas aeruginosa 2192]
          Length = 425

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117
            ++ CI C  C   C   +    +     DGT R   Y++   +C+ C LCQ  CPV + 
Sbjct: 342 DQDACIGCGRCHIACEDTSHQAIASLPRADGTHR---YEVIDAECVGCNLCQITCPVENC 398

Query: 118 IVEGPN 123
           I   P 
Sbjct: 399 IEMVPQ 404


>gi|4029298|emb|CAA76342.1| hydrogenase [Nyctotherus ovalis]
          Length = 456

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 1/65 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++CI C +C   C  Q +          G        +D+ +CI CG C   CP  AI
Sbjct: 167 DNDKCINCDICVHTCSLQGLNALGFYNEE-GHAVKSMGTLDVSECIQCGQCINRCPTGAI 225

Query: 119 VEGPN 123
            E   
Sbjct: 226 TEKSE 230


>gi|78044780|ref|YP_361471.1| putative sulfite reductase, iron-sulfur binding subunit
           [Carboxydothermus hydrogenoformans Z-2901]
 gi|77996895|gb|ABB15794.1| putative sulfite reductase, iron-sulfur binding subunit
           [Carboxydothermus hydrogenoformans Z-2901]
          Length = 302

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/102 (25%), Positives = 37/102 (36%), Gaps = 22/102 (21%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              +E C AC LC  ICP  AIT+                 +D   CI CG C +ACP +
Sbjct: 171 NWIKENCTACGLCTKICPVNAITLNQQEIS-----------VDYEVCIGCGDCVKACPFE 219

Query: 117 AIVEGPNFEFAT---ETRQ--------ELYYDKERLLNNGDR 147
           A      +  +      R+             KE++    D+
Sbjct: 220 AYRGEYGYSLSFGGSFGRKINIGKKLIPFISSKEKMFAIFDK 261



 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 17/44 (38%)

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           A           G +   R +     C  CGLC + CPV+AI  
Sbjct: 151 ANNCLKAEENDLGIKGVCRPNWIKENCTACGLCTKICPVNAITL 194


>gi|15595636|ref|NP_249130.1| dihydropyrimidine dehydrogenase [Pseudomonas aeruginosa PAO1]
 gi|9946297|gb|AAG03828.1|AE004481_4 probable oxidoreductase [Pseudomonas aeruginosa PAO1]
          Length = 425

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117
            ++ CI C  C   C   +    +     DGT R   Y++   +C+ C LCQ  CPV + 
Sbjct: 342 DQDACIGCGRCHIACEDTSHQAIASLPRADGTHR---YEVIDAECVGCNLCQITCPVENC 398

Query: 118 IVEGPN 123
           I   P 
Sbjct: 399 IEMVPQ 404


>gi|86147960|ref|ZP_01066264.1| electron transport complex protein RnfB [Vibrio sp. MED222]
 gi|85834285|gb|EAQ52439.1| electron transport complex protein RnfB [Vibrio sp. MED222]
          Length = 197

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 25/84 (29%), Gaps = 10/84 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
            +   S               E+ CI C  C   CP  AI   +             + +
Sbjct: 90  VEVEDSAHDLDNKVKTVAFIHEDMCIGCTKCIQACPVDAIVGGTK----------ALHTV 139

Query: 99  DMIKCIYCGLCQEACPVDAIVEGP 122
              +C  C LC   CP D I   P
Sbjct: 140 IKDECTGCDLCVAPCPTDCIEMIP 163


>gi|84393395|ref|ZP_00992154.1| electron transport complex protein RnfB [Vibrio splendidus 12B01]
 gi|148977611|ref|ZP_01814187.1| electron transport complex protein RnfB [Vibrionales bacterium
           SWAT-3]
 gi|218708973|ref|YP_002416594.1| electron transport complex protein RnfB [Vibrio splendidus LGP32]
 gi|254807928|sp|B7VLT8|RNFB_VIBSL RecName: Full=Electron transport complex protein rnfB
 gi|84376004|gb|EAP92893.1| electron transport complex protein RnfB [Vibrio splendidus 12B01]
 gi|145963126|gb|EDK28394.1| electron transport complex protein RnfB [Vibrionales bacterium
           SWAT-3]
 gi|218321992|emb|CAV18005.1| Electron transport complex protein rnfB [Vibrio splendidus LGP32]
          Length = 197

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 25/84 (29%), Gaps = 10/84 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
            +   S               E+ CI C  C   CP  AI   +             + +
Sbjct: 90  VEVEDSAHDLDNKVKTVAFIHEDMCIGCTKCIQACPVDAIVGGTK----------ALHTV 139

Query: 99  DMIKCIYCGLCQEACPVDAIVEGP 122
              +C  C LC   CP D I   P
Sbjct: 140 IKDECTGCDLCVAPCPTDCIEMIP 163


>gi|116749229|ref|YP_845916.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Syntrophobacter fumaroxidans MPOB]
 gi|116698293|gb|ABK17481.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Syntrophobacter fumaroxidans MPOB]
          Length = 576

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           +RC  C LC  +CP  A+ IE         +R    +I    C  CG+C   CP   I
Sbjct: 497 DRCDGCALCVDLCPYLALKIEEVEEEGRKRKRIKTDNI---LCKGCGVCAATCPKGGI 551


>gi|331002204|ref|ZP_08325723.1| hypothetical protein HMPREF0491_00585 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330411298|gb|EGG90714.1| hypothetical protein HMPREF0491_00585 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 393

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 12/58 (20%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C  C  C   CP  AIT+E+               +  I C  CG C E CP DAI
Sbjct: 8   KDCRGCTKCVKSCPFDAITMENKKA------------VIGIACTSCGTCIEVCPFDAI 53



 Score = 33.9 bits (76), Expect = 7.9,   Method: Composition-based stats.
 Identities = 8/25 (32%), Positives = 11/25 (44%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           +    C  C  C ++CP DAI    
Sbjct: 5   VIEKDCRGCTKCVKSCPFDAITMEN 29


>gi|315652760|ref|ZP_07905734.1| electron transfer flavoprotein alpha subunit [Eubacterium saburreum
           DSM 3986]
 gi|315484962|gb|EFU75370.1| electron transfer flavoprotein alpha subunit [Eubacterium saburreum
           DSM 3986]
          Length = 393

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 12/58 (20%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C  C  C   CP  AIT+E+               +  I C  CG C E CP DAI
Sbjct: 8   KDCRGCTKCVKSCPFDAITMENKKA------------VIGIACTSCGTCIEVCPFDAI 53



 Score = 33.9 bits (76), Expect = 7.9,   Method: Composition-based stats.
 Identities = 8/25 (32%), Positives = 11/25 (44%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           +    C  C  C ++CP DAI    
Sbjct: 5   VIEKDCRGCTKCVKSCPFDAITMEN 29


>gi|300087354|ref|YP_003757876.1| NADH dehydrogenase [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527087|gb|ADJ25555.1| NADH dehydrogenase (quinone) [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 622

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 14/92 (15%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
             LRY F  + T +    +           +L  Y    +RC  C+LC   CPAQAIT  
Sbjct: 537 TTLRY-FHDEYTAHIRDRRCPAGVC----KSLITYRIINDRCTGCRLCVKACPAQAITFA 591

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
              R            +D   C  CG+C+E C
Sbjct: 592 GKRRPVI---------LDEAVCNRCGICREVC 614



 Score = 40.9 bits (94), Expect = 0.063,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 16/50 (32%)

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
                    I          +  + Y I   +C  C LC +ACP  AI  
Sbjct: 541 YFHDEYTAHIRDRRCPAGVCKSLITYRIINDRCTGCRLCVKACPAQAITF 590


>gi|294495628|ref|YP_003542121.1| formylmethanofuran dehydrogenase, subunit F [Methanohalophilus
           mahii DSM 5219]
 gi|292666627|gb|ADE36476.1| formylmethanofuran dehydrogenase, subunit F [Methanohalophilus
           mahii DSM 5219]
          Length = 437

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 1/92 (1%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E      R R +   R      +RCI C LC  ICP +A+          G        +
Sbjct: 24  EGSHIMYRQRTDKGTRTLDYDYKRCIGCGLCVRICPTEALEAGPIHEIATGMDAPPVM-L 82

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
           D+ KC +C +C   CPV+A       +   + 
Sbjct: 83  DLDKCTFCSMCANFCPVNAFRMSAEGDLPEDD 114



 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E++C  C LC  ICP  AI    G R  +         ID  KC  CG C   CP DA+
Sbjct: 208 DEDQCDYCVLCADICPEDAIE-VKGTRRGEAPVIEGGARIDPEKCTVCGWCDIVCPYDAV 266

Query: 119 VEGPNFE 125
                FE
Sbjct: 267 DITKPFE 273



 Score = 42.0 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 6/78 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPVD 116
             ++C  C +C   CP  A  + +     +     V     +   KC+ C LC+  CP D
Sbjct: 83  DLDKCTFCSMCANFCPVNAFRMSAEGDLPEDDLFPVLEGRAMINEKCLPCLLCEATCPED 142

Query: 117 AIVEGPNFEFATETRQEL 134
           AI    + E   +T++EL
Sbjct: 143 AI----DLELEMQTKEEL 156



 Score = 40.5 bits (93), Expect = 0.085,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E++C  C LC   C   A  +              +  +D  +C YC LC + CP DAI
Sbjct: 170 DEDKCTLCGLCARFC--DAFMLLEKEPGPLDPTPFEQLLVDEDQCDYCVLCADICPEDAI 227



 Score = 38.9 bits (89), Expect = 0.24,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 9/81 (11%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93
           I  P++    +  F GE  L      +     C  C  +CP+    I        G +  
Sbjct: 259 IVCPYDAVDITKPFEGELKLIDANINKCDPTGCHACFNVCPSHLWYI-----PESGQKIA 313

Query: 94  VRYDIDMIKCIYCGLCQEACP 114
            R D+    C YCG C+ ACP
Sbjct: 314 ARDDL----CTYCGACENACP 330



 Score = 37.0 bits (84), Expect = 0.81,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 25/69 (36%), Gaps = 5/69 (7%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCI 104
              L       E+C+ C LCEA CP  AI +E                     ID  KC 
Sbjct: 116 FPVLEGRAMINEKCLPCLLCEATCPEDAIDLELEMQTKEELAPFKEGEEGVITIDEDKCT 175

Query: 105 YCGLCQEAC 113
            CGLC   C
Sbjct: 176 LCGLCARFC 184


>gi|270158204|ref|ZP_06186861.1| electron transport complex family protein [Legionella longbeachae
           D-4968]
 gi|289163539|ref|YP_003453677.1| Electron transport complex protein [Legionella longbeachae NSW150]
 gi|269990229|gb|EEZ96483.1| electron transport complex family protein [Legionella longbeachae
           D-4968]
 gi|288856712|emb|CBJ10523.1| Electron transport complex protein [Legionella longbeachae NSW150]
          Length = 204

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 10/59 (16%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            CI C  C   CP  AI               + + +   +C  CGLC   CPVD I  
Sbjct: 83  ECIGCTKCIKACPVDAIIGSGK----------LMHAVMTHECTGCGLCVAPCPVDCIEM 131



 Score = 37.4 bits (85), Expect = 0.77,   Method: Composition-based stats.
 Identities = 15/42 (35%), Positives = 19/42 (45%)

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           R      I   +CI C  C +ACPVDAI+       A  T +
Sbjct: 72  RPPSVAVIREAECIGCTKCIKACPVDAIIGSGKLMHAVMTHE 113


>gi|254491636|ref|ZP_05104815.1| electron transport complex, RnfABCDGE type, B subunit subfamily
           [Methylophaga thiooxidans DMS010]
 gi|224463114|gb|EEF79384.1| electron transport complex, RnfABCDGE type, B subunit subfamily
           [Methylophaga thiooxydans DMS010]
          Length = 172

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 30/93 (32%), Gaps = 10/93 (10%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E          E         E+RCI C LC   CP  AI   +             + +
Sbjct: 75  EPKPLDEECGVEKPKTLAVIDEDRCIGCTLCIQACPVDAILGAAK----------HMHTV 124

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
              +C  C LC E CPVD I      +     R
Sbjct: 125 IADECTGCELCVEPCPVDCIDMVEVAQNPNTWR 157


>gi|213579914|ref|ZP_03361740.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
          Length = 259

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 25/78 (32%), Gaps = 12/78 (15%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            + C  C  C   CP   I  +                I   +C  CG C   CP  A+ 
Sbjct: 190 PQECRMCGACWRSCPENVIQFDDD-----------TLTIAAARCTGCGGCAAVCPHQALR 238

Query: 120 EGPNFEFATETRQELYYD 137
              + E A+ TR    + 
Sbjct: 239 LRFDVEPAS-TRHSAVHT 255



 Score = 35.1 bits (79), Expect = 3.0,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID  +CI CG C   CPVDAI
Sbjct: 47  IDTTRCIACGDCLFVCPVDAI 67


>gi|188996386|ref|YP_001930637.1| ferredoxin-type protein, NapH/MauN family [Sulfurihydrogenibium sp.
           YO3AOP1]
 gi|188931453|gb|ACD66083.1| ferredoxin-type protein, NapH/MauN family [Sulfurihydrogenibium sp.
           YO3AOP1]
          Length = 292

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 7/72 (9%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G+ ++ R  +  E+C  C  C+++CP                +      ++   CI CG 
Sbjct: 213 GQKSIIRVHHNHEKCTLCMECKSVCP-------EKQVLSMVGKDGYTSFVNSGACINCGR 265

Query: 109 CQEACPVDAIVE 120
           C E CP DA+  
Sbjct: 266 CIEVCPADALNF 277



 Score = 35.5 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 6/48 (12%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
             C  +CP  A           G +  +R   +  KC  C  C+  CP
Sbjct: 197 GWCGHLCPLGAFYSI------IGQKSIIRVHHNHEKCTLCMECKSVCP 238


>gi|146311476|ref|YP_001176550.1| electron transport complex protein RnfB [Enterobacter sp. 638]
 gi|145318352|gb|ABP60499.1| electron transport complex, RnfABCDGE type, B subunit [Enterobacter
           sp. 638]
          Length = 192

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 23/76 (30%), Gaps = 10/76 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   +             + +    C  C LC   CP   I
Sbjct: 113 DEANCIGCTKCIQACPVDAIVGAT----------RAMHTVIADLCTGCNLCVAPCPTQCI 162

Query: 119 VEGPNFEFATETRQEL 134
              P        + +L
Sbjct: 163 DLRPVETTTESWKWDL 178



 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C  C +ACPVDAI
Sbjct: 112 IDEANCIGCTKCIQACPVDAI 132


>gi|116235062|dbj|BAF34980.1| trichloroethene reductive dehalogenase [uncultured Dehalococcoides
           sp.]
          Length = 554

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 3/60 (5%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID---MIKCIYCGLCQEACPVD 116
            E C  C +C   CP QAI+ E              Y+       KCI C  C+  CP  
Sbjct: 434 REFCKTCGICAEHCPTQAISHEGPRYDSPYWDNVSGYEGWHLDHHKCINCTNCEAFCPFF 493



 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 103 CIYCGLCQEACPVDAI-VEGPNFE 125
           C  CG+C E CP  AI  EGP ++
Sbjct: 437 CKTCGICAEHCPTQAISHEGPRYD 460


>gi|57640966|ref|YP_183444.1| putative ATPase RIL [Thermococcus kodakarensis KOD1]
 gi|57159290|dbj|BAD85220.1| predicted ATPase, RNase L inhibitor homolog [Thermococcus
           kodakarensis KOD1]
          Length = 594

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 21/72 (29%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           R      ++C   K    +C         G           R  I    C  CG+C   C
Sbjct: 3   RIAVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYRPIIQEASCTGCGICVHKC 62

Query: 114 PVDAIVEGPNFE 125
           P +AI      E
Sbjct: 63  PFNAITIVNLPE 74


>gi|305666617|ref|YP_003862904.1| ferredoxin [Maribacter sp. HTCC2170]
 gi|88708888|gb|EAR01123.1| ferredoxin [Maribacter sp. HTCC2170]
          Length = 298

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 11/64 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +  CI C  CE ICP  AI +++               ID   C  C  C E CP  +I
Sbjct: 218 CDVACIGCSKCEDICPKDAIDMDNNLAY-----------IDPDLCTLCRKCVEVCPTHSI 266

Query: 119 VEGP 122
           +E  
Sbjct: 267 IETN 270



 Score = 42.4 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 9/65 (13%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           + +  C+    C  +C   A+ ++          +T    I   KC  CG C +ACP   
Sbjct: 138 DCQYGCLGDGDCVNVCDFDAMYMDE---------KTGLPVIITDKCTSCGACVKACPRHI 188

Query: 118 IVEGP 122
           +   P
Sbjct: 189 LEMRP 193



 Score = 38.5 bits (88), Expect = 0.28,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 8/74 (10%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCH--------DGTRRTVRYDIDMIKCIYCGLCQEA 112
           ++C +C  C   CP   + +    +          +  +  +      + CI C  C++ 
Sbjct: 172 DKCTSCGACVKACPRHILEMRPRNKRDLKIFVGCLNEDKGGIAKRACDVACIGCSKCEDI 231

Query: 113 CPVDAIVEGPNFEF 126
           CP DAI    N  +
Sbjct: 232 CPKDAIDMDNNLAY 245


>gi|219666754|ref|YP_002457189.1| reductive dehalogenase [Desulfitobacterium hafniense DCB-2]
 gi|19421883|gb|AAL87772.1|AF403183_8 putative reductive dehalogenase [Desulfitobacterium hafniense
           DCB-2]
 gi|219537014|gb|ACL18753.1| reductive dehalogenase [Desulfitobacterium hafniense DCB-2]
          Length = 463

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 7/72 (9%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGT-------RRTVRYDIDMIKCIYCGLCQEAC 113
           + C  C  C   CPA+AIT +     ++G        ++   +     + + CG C + C
Sbjct: 345 DFCRVCNKCADNCPAEAITHDKDMVEYNGYLRWNSDYKKCAEFRAGNDEGVSCGRCIKVC 404

Query: 114 PVDAIVEGPNFE 125
           P  +  +    E
Sbjct: 405 PWSSKEDSWFHE 416


>gi|323498080|ref|ZP_08103085.1| electron transport complex protein RnfB [Vibrio sinaloensis DSM
           21326]
 gi|323316860|gb|EGA69866.1| electron transport complex protein RnfB [Vibrio sinaloensis DSM
           21326]
          Length = 193

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 10/66 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E+ CI C  C   CP  AI   +             + +   +C  C LC   CP D
Sbjct: 107 FIHEDMCIGCTKCIQACPVDAIVGGTK----------ALHTVIKDECTGCDLCVAPCPTD 156

Query: 117 AIVEGP 122
            I   P
Sbjct: 157 CIEMIP 162



 Score = 37.8 bits (86), Expect = 0.58,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 25/74 (33%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
           P  R         +   +C           A  + +E+    H+         I    CI
Sbjct: 55  PGCRPYAEAIANGDEINKCPPGGQATIEKLADLMGVEATESAHELDAVKTVAFIHEDMCI 114

Query: 105 YCGLCQEACPVDAI 118
            C  C +ACPVDAI
Sbjct: 115 GCTKCIQACPVDAI 128


>gi|302389269|ref|YP_003825090.1| electron transport complex, RnfABCDGE type, C subunit
           [Thermosediminibacter oceani DSM 16646]
 gi|302199897|gb|ADL07467.1| electron transport complex, RnfABCDGE type, C subunit
           [Thermosediminibacter oceani DSM 16646]
          Length = 438

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 17/53 (32%), Gaps = 1/53 (1%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            CI C  C   CP   +    G     G           + CI CG C   CP
Sbjct: 365 PCIRCARCVDACPIHLLPTYLGKLAERGMWVEAE-RYHALDCIECGCCAYVCP 416


>gi|222099459|ref|YP_002534027.1| NADP-reducing hydrogenase, subunit D [Thermotoga neapolitana DSM
           4359]
 gi|221571849|gb|ACM22661.1| NADP-reducing hydrogenase, subunit D [Thermotoga neapolitana DSM
           4359]
          Length = 600

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 3/65 (4%)

Query: 59  GEERCIACKLCEAIC-PAQAITIESGPRCHDGTRRTVRYDI--DMIKCIYCGLCQEACPV 115
              +CI C+ C  +C   Q + I S       T     +D+      CI CG C   CP 
Sbjct: 162 EISKCIKCQRCVRVCSEVQGMHIYSMVERGYRTYPGTPFDMPVYETDCIGCGQCAVFCPT 221

Query: 116 DAIVE 120
            AIVE
Sbjct: 222 GAIVE 226


>gi|218889181|ref|YP_002438045.1| dihydropyrimidine dehydrogenase [Pseudomonas aeruginosa LESB58]
 gi|218769404|emb|CAW25164.1| probable oxidoreductase [Pseudomonas aeruginosa LESB58]
          Length = 425

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 4/66 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117
            ++ CI C  C   C   +    +     DGT R   Y++   +C+ C LCQ  CPV + 
Sbjct: 342 DQDACIGCGRCHIACEDTSHQAIASLPRADGTHR---YEVIDAECVGCNLCQITCPVENC 398

Query: 118 IVEGPN 123
           I   P 
Sbjct: 399 IEMVPQ 404


>gi|160931195|ref|ZP_02078598.1| hypothetical protein CLOLEP_00033 [Clostridium leptum DSM 753]
 gi|156869807|gb|EDO63179.1| hypothetical protein CLOLEP_00033 [Clostridium leptum DSM 753]
          Length = 865

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/127 (18%), Positives = 36/127 (28%), Gaps = 24/127 (18%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P           G    R      E+C  CK+C          +E+         R  +
Sbjct: 695 CPNNCVKPDLNDLGIIGQRIPQVDLEKCRGCKVC---------QVENTCPIKVAKVRDGK 745

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRN 155
             ID   C +CG C   CP  A+    +            Y        G RW  ++ + 
Sbjct: 746 VVIDDSICNHCGRCVGKCPFKAVEAHQD--------GYRVY-------IGGRWGKKVAQG 790

Query: 156 IVTDSPY 162
              D  +
Sbjct: 791 KYLDKVF 797


>gi|118444096|ref|YP_877287.1| electron transfer flavoprotein, alpha subunit [Clostridium novyi
           NT]
 gi|118134552|gb|ABK61596.1| electron transfer flavoprotein, alpha subunit [Clostridium novyi
           NT]
          Length = 396

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 12/63 (19%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ++C+ CK+C   CP  AI IE+               I    C  CG C   C  +AI  
Sbjct: 9   DKCVGCKICANTCPFGAIEIENKKA------------IIKDNCTLCGSCINVCKFNAIEL 56

Query: 121 GPN 123
             +
Sbjct: 57  KKD 59



 Score = 34.7 bits (78), Expect = 4.1,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 11/26 (42%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGP 122
            I   KC+ C +C   CP  AI    
Sbjct: 5   TILKDKCVGCKICANTCPFGAIEIEN 30


>gi|15899475|ref|NP_344080.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Sulfolobus solfataricus P2]
 gi|13816091|gb|AAK42870.1| Molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Sulfolobus solfataricus P2]
          Length = 409

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 5/78 (6%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
            +R    +    +     IAC  C+     Q     +  +   G  R     I   KCI 
Sbjct: 43  NWRSLIVMTHGESKTALSIACNHCDNPTCMQVCPANAIEKNEMGIVR-----IRDDKCIG 97

Query: 106 CGLCQEACPVDAIVEGPN 123
           CG C  ACP +A+     
Sbjct: 98  CGFCTWACPYEALKFNNE 115



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 4/91 (4%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
             + P            ++ +      +++CI C  C   CP +A+   +          
Sbjct: 65  HCDNPTCMQVCPANAIEKNEMGIVRIRDDKCIGCGFCTWACPYEALKFNNEGVMSKCHFC 124

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
             R  +   K I    C EACP  A+  G  
Sbjct: 125 YDR--LAEGKGI--PYCVEACPTGALAFGWI 151


>gi|115445575|ref|NP_001046567.1| Os02g0282900 [Oryza sativa Japonica Group]
 gi|47848571|dbj|BAD22422.1| putative 68 kDa protein HP68 [Oryza sativa Japonica Group]
 gi|113536098|dbj|BAF08481.1| Os02g0282900 [Oryza sativa Japonica Group]
 gi|125581670|gb|EAZ22601.1| hypothetical protein OsJ_06269 [Oryza sativa Japonica Group]
 gi|215768320|dbj|BAH00549.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 608

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 23/54 (42%)

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C   C  +     +G +C + T  +    I    CI CG+C + CP DAI    
Sbjct: 25  CGQQCRKRCPVNATGRQCIEVTPSSRVSLISEELCIGCGICVKVCPFDAIQIIN 78


>gi|94309500|ref|YP_582710.1| formate dehydrogenase subunit alpha [Cupriavidus metallidurans
           CH34]
 gi|93353352|gb|ABF07441.1| NAD-dependent formate dehydrogenase alpha subunit [Cupriavidus
           metallidurans CH34]
          Length = 957

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 21/70 (30%), Gaps = 3/70 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     SG                   C+ CG C +
Sbjct: 165 YFTYDPSKCIVCNRCVRACEETQGTFALTISGRGFDSRVAAGTSQPFMESDCVSCGACVQ 224

Query: 112 ACPVDAIVEG 121
           ACP   + E 
Sbjct: 225 ACPTATLTET 234


>gi|332558611|ref|ZP_08412933.1| dihydropyrimidine dehydrogenase subunit B [Rhodobacter sphaeroides
           WS8N]
 gi|332276323|gb|EGJ21638.1| dihydropyrimidine dehydrogenase subunit B [Rhodobacter sphaeroides
           WS8N]
          Length = 434

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 8/78 (10%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI C  C A C       E              + +   +C+ 
Sbjct: 330 QYLNLNYVAKAQIDQDLCIKCGRCYAAC-------EDTSHQAIAMSTDRTFTVKDEECVA 382

Query: 106 CGLCQEACPV-DAIVEGP 122
           C LC + CPV D I    
Sbjct: 383 CNLCVDVCPVEDCITMRK 400


>gi|304314406|ref|YP_003849553.1| glutamate synthase, subunit 2 [Methanothermobacter marburgensis
           str. Marburg]
 gi|302587865|gb|ADL58240.1| predicted glutamate synthase, subunit 2 [Methanothermobacter
           marburgensis str. Marburg]
          Length = 499

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 29/94 (30%), Gaps = 15/94 (15%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                 E  C  C  C   CP     I +G              +    C+ C +C+E C
Sbjct: 25  MCDNRDESLCANCYSCYNNCPHDVYEIINGEPVP----------LRHENCVGCRICEEMC 74

Query: 114 PVDAIVEGPNFEFATETRQELYYDKERLLNNGDR 147
           P +AI          E R+   +    LL    +
Sbjct: 75  PNNAI----EVNAVPEDRRN-VWSFTDLLEIQRK 103


>gi|303244682|ref|ZP_07331014.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
 gi|302484990|gb|EFL47922.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
          Length = 501

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 2/77 (2%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100
                    ++    Y     RC  C  CE +CP   I ++   +     +R   Y    
Sbjct: 53  RECPNDAIKKNEFGGYYVDRRRCNGCGTCEKVCPINIIKMKKVEKTVKNGKRAFVY--PD 110

Query: 101 IKCIYCGLCQEACPVDA 117
             CI CGLC E CP DA
Sbjct: 111 GICIMCGLCVEVCPYDA 127



 Score = 41.6 bits (96), Expect = 0.039,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 3/72 (4%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           A+       E+CI C  C   CP  A+ I +         +     I +  CI CGLC +
Sbjct: 239 AINCGEVKNEKCILCGNCIEKCPKDALQISNFKVVKIKEDKKT---IPLKHCINCGLCAD 295

Query: 112 ACPVDAIVEGPN 123
            CP  A+    N
Sbjct: 296 NCPAGALKIEDN 307



 Score = 40.5 bits (93), Expect = 0.072,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 36/101 (35%), Gaps = 10/101 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            PF++ S        +A+    N    CI C  C   CP  AI                 
Sbjct: 18  CPFKEISKCMEVCPTNAIILIDNKAFSCITCGTCARECPNDAIKKNE----------FGG 67

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
           Y +D  +C  CG C++ CP++ I      +     ++   Y
Sbjct: 68  YYVDRRRCNGCGTCEKVCPINIIKMKKVEKTVKNGKRAFVY 108



 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 29/74 (39%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
              +     ++ CI C  C  +CP  AIT++     ++  +   R  I    C+ C  C 
Sbjct: 361 EIKKFDVIRDDNCIGCGTCSNVCPNDAITVKIIKFKNEICKSIKREVIFNENCVMCENCA 420

Query: 111 EACPVDAIVEGPNF 124
             CP D I     +
Sbjct: 421 IHCPRDVIPNITGY 434



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 9/56 (16%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C+ C +CE  CP +AI+I+   +            I    CI CG C   CP DAI
Sbjct: 342 CVLCGICENNCPNKAISIKEIKKFD---------VIRDDNCIGCGTCSNVCPNDAI 388



 Score = 37.0 bits (84), Expect = 0.86,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 22/66 (33%), Gaps = 15/66 (22%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               + C  C +C  +CP  AI                       KCI CG C E CP D
Sbjct: 219 KENVDGCTRCNICGDVCPKDAINCGEVKN---------------EKCILCGNCIEKCPKD 263

Query: 117 AIVEGP 122
           A+    
Sbjct: 264 ALQISN 269



 Score = 35.1 bits (79), Expect = 3.2,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 31/105 (29%), Gaps = 15/105 (14%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP---RCHDGT 90
              P +    S     +    +     + CI C LC   CPA A+ IE            
Sbjct: 258 EKCPKDALQISNFKVVKIKEDKKTIPLKHCINCGLCADNCPAGALKIEDNKVLYDPSSCK 317

Query: 91  RRTVRYDIDM------------IKCIYCGLCQEACPVDAIVEGPN 123
                 +I                C+ CG+C+  CP  AI     
Sbjct: 318 LCNTCVNICPQGVRINKGKFIDGGCVLCGICENNCPNKAISIKEI 362



 Score = 34.7 bits (78), Expect = 4.3,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            E C+ C+ C   CP   I   +G +     +       D   C+ CGLC + CP +A+ 
Sbjct: 410 NENCVMCENCAIHCPRDVIPNITGYK-KIVDKNNSFIRTDFDFCVQCGLCNKICPNNAVD 468

Query: 120 EGP 122
           +G 
Sbjct: 469 KGK 471


>gi|302387337|ref|YP_003823159.1| Electron transfer flavoprotein alpha/beta-subunit [Clostridium
           saccharolyticum WM1]
 gi|302197965|gb|ADL05536.1| Electron transfer flavoprotein alpha/beta-subunit [Clostridium
           saccharolyticum WM1]
          Length = 393

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 12/58 (20%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           E+C  C +C   CP  AIT+E+               +    C  CG+C E CP DAI
Sbjct: 8   EKCRGCSICVKNCPFDAITMENKLA------------VIGTACTGCGVCVEKCPFDAI 53



 Score = 35.1 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 13/26 (50%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGP 122
           ++   KC  C +C + CP DAI    
Sbjct: 4   NVIKEKCRGCSICVKNCPFDAITMEN 29


>gi|302336532|ref|YP_003801739.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Olsenella uli
           DSM 7084]
 gi|301320372|gb|ADK68859.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Olsenella uli
           DSM 7084]
          Length = 302

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 15/66 (22%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L +Y    ++C+ C  C  +C                    +  +   ++CI CG C +A
Sbjct: 230 LLQYHVDADKCVKCGKCARVCKMD---------------VDITKNSSSLECIRCGECAKA 274

Query: 113 CPVDAI 118
           CPV AI
Sbjct: 275 CPVKAI 280


>gi|299140591|ref|ZP_07033729.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Prevotella oris
           C735]
 gi|298577557|gb|EFI49425.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Prevotella oris
           C735]
          Length = 1175

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 23/82 (28%), Gaps = 16/82 (19%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK----- 102
           RG  A        E CI C  C   CP   I          G       DI   K     
Sbjct: 657 RGVAAFVPVWK-PENCIQCNKCAYSCPHATIRPFVLDEKEKGDFGDETIDILAPKQLKGM 715

Query: 103 ----------CIYCGLCQEACP 114
                     C+ CG C + CP
Sbjct: 716 QFRIQVDVLDCLGCGNCADVCP 737


>gi|294494958|ref|YP_003541451.1| cobyrinic acid ac-diamide synthase [Methanohalophilus mahii DSM
           5219]
 gi|292665957|gb|ADE35806.1| Cobyrinic acid ac-diamide synthase [Methanohalophilus mahii DSM
           5219]
          Length = 285

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 14/72 (19%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           AL       E C  C +C   C   AI                 ++ID   C  CG+C+ 
Sbjct: 57  ALPTAIIHPELCTGCGICVDHCRFGAIK--------------EGFEIDPYICEGCGVCEY 102

Query: 112 ACPVDAIVEGPN 123
            CP DA+    N
Sbjct: 103 VCPADAVTMEYN 114



 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 10/29 (34%), Positives = 13/29 (44%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
           I    C  CG+C + C   AI EG   + 
Sbjct: 63  IHPELCTGCGICVDHCRFGAIKEGFEIDP 91


>gi|284049283|ref|YP_003399622.1| hydrogenase, Fe-only [Acidaminococcus fermentans DSM 20731]
 gi|283953504|gb|ADB48307.1| hydrogenase, Fe-only [Acidaminococcus fermentans DSM 20731]
          Length = 576

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 25/90 (27%), Gaps = 3/90 (3%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR- 95
           P+E+       R         +   +CI C  C  +C               G       
Sbjct: 122 PYEEQLPKGLRRAWTTTYPLFHDYNKCIKCMRCIQVCDKIQAMHIWDVAGTGGRTTVDVS 181

Query: 96  --YDIDMIKCIYCGLCQEACPVDAIVEGPN 123
               I    C  CG C   CPV  + E  +
Sbjct: 182 GNRVIKDSDCTLCGQCIIHCPVAGLRERDD 211


>gi|256004881|ref|ZP_05429855.1| Glutamate synthase (NADPH) [Clostridium thermocellum DSM 2360]
 gi|255991191|gb|EEU01299.1| Glutamate synthase (NADPH) [Clostridium thermocellum DSM 2360]
 gi|316941044|gb|ADU75078.1| Glutamate synthase (NADPH) [Clostridium thermocellum DSM 1313]
          Length = 501

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 9/64 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +RCI C++CE  C  +  + +   +                KC+ C  C   CP  A+
Sbjct: 15  NMDRCINCRVCERQCANEVHSYDQEKKIMCSD---------DSKCVNCHRCVALCPTRAL 65

Query: 119 VEGP 122
               
Sbjct: 66  KIVK 69


>gi|288940311|ref|YP_003442551.1| RnfABCDGE type electron transport complex subunit B [Allochromatium
           vinosum DSM 180]
 gi|288895683|gb|ADC61519.1| electron transport complex, RnfABCDGE type, B subunit
           [Allochromatium vinosum DSM 180]
          Length = 189

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 25/75 (33%), Gaps = 10/75 (13%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               E CI C  C   CP  AI   +             + +   +C  C LC E CPV 
Sbjct: 104 FIDPELCIGCTRCIQACPVDAIIGAAKQ----------LHAVLNSECTGCELCVEPCPVA 153

Query: 117 AIVEGPNFEFATETR 131
            I   P  E     R
Sbjct: 154 CITMRPIREDIQRWR 168


>gi|269119596|ref|YP_003307773.1| electron transport complex, RnfABCDGE type, C subunit [Sebaldella
           termitidis ATCC 33386]
 gi|268613474|gb|ACZ07842.1| electron transport complex, RnfABCDGE type, C subunit [Sebaldella
           termitidis ATCC 33386]
          Length = 438

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                + CI C  C  +CP   + ++       G +     + ++  CI CG C+  CP
Sbjct: 357 DRIERKNCILCGYCSEVCPVYLMPMKFEEFYRKG-KYKKLLEFNLNSCIECGACEYICP 414



 Score = 37.0 bits (84), Expect = 0.95,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 12/27 (44%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPN 123
            I+   CI CG C E CPV  +     
Sbjct: 358 RIERKNCILCGYCSEVCPVYLMPMKFE 384


>gi|197105161|ref|YP_002130538.1| glutamate synthase (NADPH) small chain [Phenylobacterium zucineum
           HLK1]
 gi|196478581|gb|ACG78109.1| glutamate synthase (NADPH) small chain [Phenylobacterium zucineum
           HLK1]
          Length = 596

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 26/82 (31%), Gaps = 20/82 (24%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK-------------------- 102
           CI C  C  ICP   IT        +   R     ++  +                    
Sbjct: 502 CIECDACVDICPMDCITFTEDGEEDELRGRLKAPALNPEQDLYASGRLGTGRIMVKDEDV 561

Query: 103 CIYCGLCQEACPVDAIVEGPNF 124
           C++CGLC E CP  A      +
Sbjct: 562 CLHCGLCAERCPTGAWDMQKFY 583



 Score = 34.3 bits (77), Expect = 5.1,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 103 CIYCGLCQEACPVDAIVEGPNFE 125
           CI C  C + CP+D I    + E
Sbjct: 502 CIECDACVDICPMDCITFTEDGE 524


>gi|168185418|ref|ZP_02620053.1| MinD superfamily P-loop ATPase containing an inserted ferredoxin
           domain [Clostridium botulinum C str. Eklund]
 gi|169296260|gb|EDS78393.1| MinD superfamily P-loop ATPase containing an inserted ferredoxin
           domain [Clostridium botulinum C str. Eklund]
          Length = 285

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 46/150 (30%), Gaps = 25/150 (16%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG-------EERCIACKLCEAIC 73
              +    K    I+   +  +    + G+    R   G       EE C  C  C+ +C
Sbjct: 18  ATAISELAKDVVKIDCDVDAPNLYLFYNGKDIKSRDFCGGKIAEINEELCKNCGKCKKVC 77

Query: 74  PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN--FEFATETR 131
              AI+                  I+   C  CG C   CP +AI        E      
Sbjct: 78  RFDAISNNK---------------INPYSCEGCGTCILVCPSNAITLKEEKSAEIYITKT 122

Query: 132 QELYYDKERLLNNGDRWESEIVRNIVTDSP 161
            +    + ++ + G     +++  +  D+ 
Sbjct: 123 DKGIISRAKM-DIGSEGSGKLIAELREDAK 151


>gi|153954756|ref|YP_001395521.1| pyruvate-flavodoxin oxidoreductase [Clostridium kluyveri DSM 555]
 gi|219855220|ref|YP_002472342.1| hypothetical protein CKR_1877 [Clostridium kluyveri NBRC 12016]
 gi|146347614|gb|EDK34150.1| Pyruvate-flavodoxin oxidoreductase [Clostridium kluyveri DSM 555]
 gi|219568944|dbj|BAH06928.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 1169

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 26/89 (29%), Gaps = 16/89 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY 96
            A+       ++CI C  C  +CP               +A                   
Sbjct: 677 IAINVPEWQADKCIQCNQCSFVCPHAAIRPVLTNAEELAKAPVGFESKAASGAKGLNFTI 736

Query: 97  DIDMIKCIYCGLCQEACP--VDAIVEGPN 123
            +  + C  CG C + CP    A+V  P 
Sbjct: 737 AVSPLDCTGCGNCADICPAKEKALVMKPI 765



 Score = 34.3 bits (77), Expect = 5.3,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 11/32 (34%), Gaps = 2/32 (6%)

Query: 99  DMIKCIYCGLCQEACPVDAIV--EGPNFEFAT 128
              KCI C  C   CP  AI        E A 
Sbjct: 685 QADKCIQCNQCSFVCPHAAIRPVLTNAEELAK 716


>gi|18310047|ref|NP_561981.1| ferredoxin [Clostridium perfringens str. 13]
 gi|18144726|dbj|BAB80771.1| ferredoxin-like protein [Clostridium perfringens str. 13]
          Length = 268

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/69 (36%), Positives = 27/69 (39%), Gaps = 11/69 (15%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
               N    CI CKLCE  CP  AI +E+               ID  KC  CGLC   C
Sbjct: 210 IVNKNCSVGCIGCKLCEKNCPNGAIKVENNLAI-----------IDYEKCTSCGLCVSKC 258

Query: 114 PVDAIVEGP 122
           P  AI    
Sbjct: 259 PKKAINLRK 267



 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 5/78 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCIYCGLCQEAC 113
              +C+ACK C  +CP   I I    +             +      + CI C LC++ C
Sbjct: 170 DSSKCVACKACIRVCPQNLIDIIKDDQKVIVNCNSNDSGKIVNKNCSVGCIGCKLCEKNC 229

Query: 114 PVDAIVEGPNFEFATETR 131
           P  AI    N       +
Sbjct: 230 PNGAIKVENNLAIIDYEK 247


>gi|332667239|ref|YP_004450027.1| formate dehydrogenase subunit alpha [Haliscomenobacter hydrossis
           DSM 1100]
 gi|332336053|gb|AEE53154.1| formate dehydrogenase, alpha subunit [Haliscomenobacter hydrossis
           DSM 1100]
          Length = 917

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 55  RYPNGEERCIACKLCEAICPA---QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
              +   +CI C  C   C     Q +   +G        +          C+ CG C +
Sbjct: 153 YMTSDLSKCILCFRCVRACDEVQGQLVLSVAGRGFESKIVKGFDQSFFESDCVSCGACAQ 212

Query: 112 ACPVDAI 118
           ACP  AI
Sbjct: 213 ACPTSAI 219


>gi|317128027|ref|YP_004094309.1| dihydroorotate dehydrogenase [Bacillus cellulosilyticus DSM 2522]
 gi|315472975|gb|ADU29578.1| dihydroorotate dehydrogenase family protein [Bacillus
           cellulosilyticus DSM 2522]
          Length = 422

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 21/65 (32%), Gaps = 4/65 (6%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               + CI C  C   C   +       +  +GT            C+ C LC   CP +
Sbjct: 336 QINNDVCINCNKCHIACEDASHQCIDMLKDANGTAYLKV---REEDCVGCNLCSIVCPEE 392

Query: 117 -AIVE 120
            AI  
Sbjct: 393 GAISM 397


>gi|300692030|ref|YP_003753025.1| 4Fe-4S ferredoxin, iron-sulphur binding [Ralstonia solanacearum
           PSI07]
 gi|299079090|emb|CBJ51752.2| 4Fe-4S ferredoxin, iron-sulphur binding [Ralstonia solanacearum
           PSI07]
          Length = 268

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 22/62 (35%), Gaps = 10/62 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ERCI C LC   CP  AI                 + +    C  C LC   CPVD I
Sbjct: 86  DPERCIGCTLCIQACPVDAIVGAPK----------AMHVVLEDWCTGCDLCVAPCPVDCI 135

Query: 119 VE 120
             
Sbjct: 136 DM 137



 Score = 39.3 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 14/21 (66%), Positives = 16/21 (76%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID  +CI C LC +ACPVDAI
Sbjct: 85  IDPERCIGCTLCIQACPVDAI 105


>gi|282856218|ref|ZP_06265501.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Pyramidobacter
           piscolens W5455]
 gi|282585977|gb|EFB91262.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Pyramidobacter
           piscolens W5455]
          Length = 1185

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 18/84 (21%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAI---------------TIESGPRCHDGTRR 92
           RG   +    N  E+CI C +C  +CP  AI               + E+         +
Sbjct: 678 RGTAVMVPEWN-PEKCIQCNMCSFVCPHAAIRPFLLNESEAMNAPESFETVNARGLKNAQ 736

Query: 93  TVRYDIDMI--KCIYCGLCQEACP 114
            +++ I +    C+ CG C E CP
Sbjct: 737 GLKFRIQLSALDCVACGSCAEVCP 760



 Score = 35.1 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 9/20 (45%), Positives = 11/20 (55%)

Query: 99  DMIKCIYCGLCQEACPVDAI 118
           +  KCI C +C   CP  AI
Sbjct: 688 NPEKCIQCNMCSFVCPHAAI 707


>gi|224539450|ref|ZP_03679989.1| hypothetical protein BACCELL_04355 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518955|gb|EEF88060.1| hypothetical protein BACCELL_04355 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 325

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 8/81 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------DMIKCIYCGLCQ 110
            E +C AC  C   CP   I I    +                       + CI CG C 
Sbjct: 169 DEAKCTACGACVKACPKNIIEIRPQGKKSRRIYVQCVNKDKGGIARKACTVACIGCGKCV 228

Query: 111 EACPVDAIVEGPNFEFATETR 131
           + CP +AI    N  +    +
Sbjct: 229 KVCPFEAITLENNLAYIDPNK 249



 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 9/61 (14%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+ C  C   C   AI +                ++D  KC  CG C +ACP + I   P
Sbjct: 142 CLGCGDCVEACQFDAIHMNPETGLP---------EVDEAKCTACGACVKACPKNIIEIRP 192

Query: 123 N 123
            
Sbjct: 193 Q 193



 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 11/56 (19%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           CI C  C  +CP +AIT+E+               ID  KC  C  C+EACP + I
Sbjct: 221 CIGCGKCVKVCPFEAITLENNLAY-----------IDPNKCKSCRKCEEACPQNTI 265


>gi|239616580|ref|YP_002939902.1| hydrogenase, Fe-only [Kosmotoga olearia TBF 19.5.1]
 gi|239505411|gb|ACR78898.1| hydrogenase, Fe-only [Kosmotoga olearia TBF 19.5.1]
          Length = 584

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 30/89 (33%), Gaps = 7/89 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIE---SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
              +CI C  C   C           +G   H      +   I    CI CG C   CPV
Sbjct: 142 DMNKCILCGRCGRACKELQGLSILSVAGRGYHSIPVPALGAPIAATDCINCGQCATVCPV 201

Query: 116 DAIVEGPNFEFATETRQELYYDKERLLNN 144
            AI E  +F    E      Y  E++L  
Sbjct: 202 GAITERMDFRRVAEE----LYKHEKVLVV 226


>gi|182420402|ref|ZP_02951624.1| sulfite reductase, subunit C [Clostridium butyricum 5521]
 gi|237667053|ref|ZP_04527037.1| sulfite reductase, subunit C [Clostridium butyricum E4 str. BoNT E
           BL5262]
 gi|182375768|gb|EDT73366.1| sulfite reductase, subunit C [Clostridium butyricum 5521]
 gi|237655401|gb|EEP52957.1| sulfite reductase, subunit C [Clostridium butyricum E4 str. BoNT E
           BL5262]
          Length = 325

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 25/78 (32%), Gaps = 8/78 (10%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
              G   +        RC++C  C   C + ++   S         +         KCI 
Sbjct: 155 HDFGIIGMTEPQYDMNRCVSCGACVKACKSLSVGALSVENYRVVRNK--------EKCIG 206

Query: 106 CGLCQEACPVDAIVEGPN 123
           CG+C   CP  A     N
Sbjct: 207 CGVCVTKCPTRAFTRSKN 224


>gi|167762908|ref|ZP_02435035.1| hypothetical protein BACSTE_01272 [Bacteroides stercoris ATCC
           43183]
 gi|167699248|gb|EDS15827.1| hypothetical protein BACSTE_01272 [Bacteroides stercoris ATCC
           43183]
          Length = 330

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 8/81 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------DMIKCIYCGLCQ 110
            E +C AC  C   CP   I I    +                       + CI CG C 
Sbjct: 169 DESKCTACGACVKACPRNIIEIRPQGKKSRRVYVQCVNKDKGAVARKACTVACIGCGKCV 228

Query: 111 EACPVDAIVEGPNFEFATETR 131
           + CP +AI    N  +    +
Sbjct: 229 KVCPFEAITLENNLAYIDPNK 249



 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 9/61 (14%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+ C  C + C   AI +                ++D  KC  CG C +ACP + I   P
Sbjct: 142 CLGCGDCVSACQFGAIRMNPETGLP---------EVDESKCTACGACVKACPRNIIEIRP 192

Query: 123 N 123
            
Sbjct: 193 Q 193



 Score = 40.5 bits (93), Expect = 0.083,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 11/60 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI C  C  +CP +AIT+E+               ID  KC  C  C+E CP   I
Sbjct: 217 CTVACIGCGKCVKVCPFEAITLENNLAY-----------IDPNKCKSCRKCEEVCPQGTI 265


>gi|160901870|ref|YP_001567451.1| formate dehydrogenase, alpha subunit [Petrotoga mobilis SJ95]
 gi|160359514|gb|ABX31128.1| formate dehydrogenase, alpha subunit [Petrotoga mobilis SJ95]
          Length = 917

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 5/69 (7%)

Query: 59  GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDIDM----IKCIYCGLCQEAC 113
             ++CI C  C   C   Q             T+ +  +D D+      C++CG C E C
Sbjct: 142 DPDKCILCGKCVRTCKEIQMCNALDFVNRGFETKVSPPFDEDLGGKDSPCVFCGQCVEMC 201

Query: 114 PVDAIVEGP 122
           P  A+   P
Sbjct: 202 PTGALTYIP 210



 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 22/75 (29%), Gaps = 9/75 (12%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------- 98
           R         +    C+ C+                     GT++  R++I         
Sbjct: 82  RKTVVDLLVSDHPMDCMTCEANGNCVLQDLAYEYGIKESTFGTKKLPRFEIKAQNEFIQL 141

Query: 99  DMIKCIYCGLCQEAC 113
           D  KCI CG C   C
Sbjct: 142 DPDKCILCGKCVRTC 156


>gi|52549636|gb|AAU83485.1| heterodisulfide reductase subunit A and related polyferredoxins
           [uncultured archaeon GZfos28G7]
          Length = 907

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 6/70 (8%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM------IKCIYCGLCQEA 112
            EE C  C +CEAICP +AI +   P        T               CI CG C   
Sbjct: 824 DEEICAGCGVCEAICPVEAIELTEEPVPVVTFGVTTVVGGTKKVAKTGDGCIGCGSCASY 883

Query: 113 CPVDAIVEGP 122
           CP  A+    
Sbjct: 884 CPSGAMSLRN 893



 Score = 38.9 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPN 123
           +D   C  CG+C+  CPV+AI     
Sbjct: 823 VDEEICAGCGVCEAICPVEAIELTEE 848


>gi|91773116|ref|YP_565808.1| thiamine pyrophosphate enzyme-like TPP-binding [Methanococcoides
           burtonii DSM 6242]
 gi|91712131|gb|ABE52058.1| Protein containing N-terminal Pyruvate flavodoxin/ferredoxin
           oxidoreductase region, C-terminal TPP-binding region and
           ferredoxin domain [Methanococcoides burtonii DSM 6242]
          Length = 601

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 26/73 (35%), Gaps = 11/73 (15%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R    L  +    ++C+ C++C  +       IE        T            C  CG
Sbjct: 537 RTGIRLTPFKVDHDKCVGCRMCVNL---GCPAIEFDKENKKSTINAT--------CTGCG 585

Query: 108 LCQEACPVDAIVE 120
           LC E C  DAI E
Sbjct: 586 LCAEVCKFDAIKE 598


>gi|5678638|gb|AAD46687.1|AF040988_2 ferredoxin type protein NapF [Pseudomonas sp. G-179]
 gi|3925393|gb|AAC79441.1| ferrodoxin-like protein [Pseudomonas sp. G-179]
          Length = 166

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 24/88 (27%), Gaps = 7/88 (7%)

Query: 35  NYPF-EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93
             P              HA+          + C+ C  +CP  AI  +            
Sbjct: 76  RCPERVFPPEPATSFAHHAVIADNCLALNFVDCQACRDVCPTTAIRFKPRLGGPF----- 130

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEG 121
               +D   C  CG C   CP  +I   
Sbjct: 131 -VPVLDTDPCTGCGACISVCPTQSITMT 157



 Score = 34.7 bits (78), Expect = 4.4,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 2/61 (3%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C  C  C A CP         P         +  +   +  + C  C++ CP  AI   
Sbjct: 66  ECTFCGECSARCPE--RVFPPEPATSFAHHAVIADNCLALNFVDCQACRDVCPTTAIRFK 123

Query: 122 P 122
           P
Sbjct: 124 P 124


>gi|297539617|ref|YP_003675386.1| formate dehydrogenase subunit alpha [Methylotenera sp. 301]
 gi|297258964|gb|ADI30809.1| formate dehydrogenase, alpha subunit [Methylotenera sp. 301]
          Length = 968

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 2/73 (2%)

Query: 55  RYPNGEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
            +     +CI C  C   C        +    R  +        D    +C+ CG C +A
Sbjct: 176 YFTFDPSKCIVCSRCVRACEETQGTFALTISGRGFESKVAAGVTDFMNSECVSCGACVQA 235

Query: 113 CPVDAIVEGPNFE 125
           CP   ++E    E
Sbjct: 236 CPTATLIEKTVIE 248


>gi|264679976|ref|YP_003279885.1| formate dehydrogenase, subunit alpha [Comamonas testosteroni CNB-2]
 gi|262210491|gb|ACY34589.1| formate dehydrogenase, alpha subunit [Comamonas testosteroni CNB-2]
          Length = 971

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 23/82 (28%), Gaps = 3/82 (3%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     SG                   C+ CG C +
Sbjct: 164 YFNYDPSKCIVCNRCVRACEETQGTFALTISGRGFESRITAGQGDGFMASDCVSCGACVQ 223

Query: 112 ACPVDAIVEGPNFEFATETRQE 133
           ACP   + E    E       E
Sbjct: 224 ACPTATLQEKTVVELGQSEHSE 245


>gi|189466149|ref|ZP_03014934.1| hypothetical protein BACINT_02519 [Bacteroides intestinalis DSM
           17393]
 gi|189434413|gb|EDV03398.1| hypothetical protein BACINT_02519 [Bacteroides intestinalis DSM
           17393]
          Length = 324

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 8/81 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------DMIKCIYCGLCQ 110
            E +C AC  C   CP   I I    +                       + CI CG C 
Sbjct: 169 DEAKCTACGACAKACPKNIIEIRPQGKKSRRVYVQCVNKDKGAVARKACTVACIGCGKCV 228

Query: 111 EACPVDAIVEGPNFEFATETR 131
           + CP +AI    N  +    +
Sbjct: 229 KVCPFEAITLENNLAYIDPNK 249



 Score = 43.5 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 9/61 (14%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+ C  C   C   AI +                ++D  KC  CG C +ACP + I   P
Sbjct: 142 CLGCGDCVEACQFDAIHMNPETGLP---------EVDEAKCTACGACAKACPKNIIEIRP 192

Query: 123 N 123
            
Sbjct: 193 Q 193



 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 11/60 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI C  C  +CP +AIT+E+               ID  KC  C  C+E CP + I
Sbjct: 217 CTVACIGCGKCVKVCPFEAITLENNLAY-----------IDPNKCKSCRKCEEVCPQNTI 265


>gi|113866669|ref|YP_725158.1| NAD-dependent formate dehydrogenase alpha subunit [Ralstonia
           eutropha H16]
 gi|113525445|emb|CAJ91790.1| NAD-dependent formate dehydrogenase alpha subunit [Ralstonia
           eutropha H16]
          Length = 959

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 24/89 (26%), Gaps = 4/89 (4%)

Query: 37  PFEKGSTSPRFRGEHALRRYP-NGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRR 92
           P      +     +     Y      +CI C  C   C     T     SG         
Sbjct: 146 PEAAPIATHTQMKKDESNPYFTYDPSKCIVCNRCVRACEETQGTFALTISGRGFDSRVSP 205

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
                     C+ CG C +ACP   + E 
Sbjct: 206 GTSQSFMESDCVSCGACVQACPTATLTET 234


>gi|158320026|ref|YP_001512533.1| hydrogenase, Fe-only [Alkaliphilus oremlandii OhILAs]
 gi|158140225|gb|ABW18537.1| hydrogenase, Fe-only [Alkaliphilus oremlandii OhILAs]
          Length = 567

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 5/69 (7%)

Query: 59  GEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
              +CI C  C  +C       A++  +              DI  + C+ CG C+  CP
Sbjct: 142 NPNKCILCGDCVRVCEEMQGVGALSF-AYRGSSMTVTPAFNRDIAEVNCVNCGQCRNVCP 200

Query: 115 VDAIVEGPN 123
             AI+    
Sbjct: 201 TGAIIIKNE 209


>gi|3127055|gb|AAC38452.1| TutE [Thauera aromatica]
          Length = 375

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 6/74 (8%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           +         +   + Y    +RC++C  C  +CP  A  +  GP      +      +D
Sbjct: 75  RCPWCHNPETQKVGKEYYYNRDRCVSCGRCATVCPTGASQLLDGPGASQVLK------LD 128

Query: 100 MIKCIYCGLCQEAC 113
             KCI C  C   C
Sbjct: 129 RSKCINCMRCVAVC 142



 Score = 37.8 bits (86), Expect = 0.54,   Method: Composition-based stats.
 Identities = 8/42 (19%), Positives = 13/42 (30%)

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
                       +  +    Y  +  +C+ CG C   CP  A
Sbjct: 71  GCPLRCPWCHNPETQKVGKEYYYNRDRCVSCGRCATVCPTGA 112


>gi|85859240|ref|YP_461442.1| heterodisulfide reductase subunit A [Syntrophus aciditrophicus SB]
 gi|85722331|gb|ABC77274.1| heterodisulfide reductase, subunit A [Syntrophus aciditrophicus SB]
          Length = 939

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 20/88 (22%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+RC+ C  C ++C   AI +    +         +  ++ + C   GLC   CP  AI
Sbjct: 860 DEKRCMGCGACASVCTYGAIEMRETKQG-------RKATMNPVLCKGDGLCNAMCPTGAI 912

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGD 146
                            Y ++ LL   D
Sbjct: 913 SLRH-------------YTEDELLAQID 927



 Score = 33.9 bits (76), Expect = 6.9,   Method: Composition-based stats.
 Identities = 8/26 (30%), Positives = 12/26 (46%)

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVE 120
             ++D  +C+ CG C   C   AI  
Sbjct: 856 VCEVDEKRCMGCGACASVCTYGAIEM 881


>gi|85858318|ref|YP_460520.1| heterodisulfide reductase subunit A [Syntrophus aciditrophicus SB]
 gi|85721409|gb|ABC76352.1| heterodisulfide reductase, subunit A [Syntrophus aciditrophicus SB]
          Length = 939

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 20/88 (22%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+RC+ C  C ++C   AI +    +         +  ++ + C   GLC   CP  AI
Sbjct: 860 DEKRCMGCGACASVCTYGAIEMRETKQG-------RKATMNPVLCKGDGLCNAMCPTGAI 912

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGD 146
                            Y ++ LL   D
Sbjct: 913 SLRH-------------YTEDELLAQID 927



 Score = 33.9 bits (76), Expect = 6.9,   Method: Composition-based stats.
 Identities = 8/26 (30%), Positives = 12/26 (46%)

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVE 120
             ++D  +C+ CG C   C   AI  
Sbjct: 856 VCEVDEKRCMGCGACASVCTYGAIEM 881


>gi|56696653|ref|YP_167014.1| dihydropyrimidine dehydrogenase [Ruegeria pomeroyi DSS-3]
 gi|56678390|gb|AAV95056.1| dihydroorotate dehydrogenase family protein [Ruegeria pomeroyi
           DSS-3]
          Length = 434

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 8/78 (10%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    +++CI C  C A C       E              +++   +C+ 
Sbjct: 330 QYLNLNYVAKAKIDQDQCIKCGRCYAAC-------EDTSHQAISMSEDRVFEVMDDECVA 382

Query: 106 CGLCQEACP-VDAIVEGP 122
           C LC + CP    I   P
Sbjct: 383 CNLCVDVCPIDGCISMVP 400


>gi|46580807|ref|YP_011615.1| heterodisulfide reductase subunit A [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120601876|ref|YP_966276.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio vulgaris DP4]
 gi|46450227|gb|AAS96875.1| heterodisulfide reductase, A subunit [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120562105|gb|ABM27849.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Desulfovibrio vulgaris DP4]
 gi|311234513|gb|ADP87367.1| FAD dependent oxidoreductase [Desulfovibrio vulgaris RCH1]
          Length = 652

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 21/64 (32%), Gaps = 7/64 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              RCI C  C   CP  AI            R   +  +    C  CG+C   CP  AI
Sbjct: 580 DVRRCIGCGKCITTCPYGAIEWME-------LRGETKARVIETVCQGCGICTVTCPQGAI 632

Query: 119 VEGP 122
               
Sbjct: 633 QLQH 636



 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 25/87 (28%), Gaps = 13/87 (14%)

Query: 57  PNGEERCIACKLCEAICPA----QAITIE----SGPRCHDGTRRTVRYDIDMIKCI---- 104
               + C  C LC   CP+     A        +            +  ID   C     
Sbjct: 236 YVDWDLCTGCGLCMEKCPSRKSPDAFNEHVGVTTAINIPFPQAIPKKAIIDPTACRQFVK 295

Query: 105 -YCGLCQEACPVDAIVEGPNFEFATET 130
             CG+C + CP  AI      E   E 
Sbjct: 296 GKCGVCAKMCPTGAIRYDMEDEIVVED 322



 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 3/39 (7%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            +D+ +CI CG C   CP  AI      E   ET+  + 
Sbjct: 578 QVDVRRCIGCGKCITTCPYGAIEW---MELRGETKARVI 613


>gi|41615088|ref|NP_963586.1| putative ATPase RIL [Nanoarchaeum equitans Kin4-M]
 gi|40068812|gb|AAR39147.1| NEQ299 [Nanoarchaeum equitans Kin4-M]
          Length = 574

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 24/76 (31%), Gaps = 3/76 (3%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
              +R       +C     C   C        +G +         +  ID   CI CGLC
Sbjct: 1   MIQMRIAIIDRTKCKP-NKCNYECYNFCPLNRAGKK--CIEIIDGKPVIDESICIGCGLC 57

Query: 110 QEACPVDAIVEGPNFE 125
            + CP  AI      E
Sbjct: 58  VKKCPFKAIKIINVPE 73


>gi|15837149|ref|NP_297837.1| ferredoxin [Xylella fastidiosa 9a5c]
 gi|9105406|gb|AAF83357.1|AE003902_2 ferredoxin II [Xylella fastidiosa 9a5c]
          Length = 159

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 25/83 (30%), Gaps = 10/83 (12%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
                     +   +     E  CI C  C   CP  AI   +             + + 
Sbjct: 86  PRPYDRSHGTQQQPQVAWIVEADCIGCTKCIQACPVDAIIGGAK----------HMHTVI 135

Query: 100 MIKCIYCGLCQEACPVDAIVEGP 122
              C  C LC  ACPVD I   P
Sbjct: 136 AALCTGCELCVPACPVDCIELHP 158


>gi|262066053|ref|ZP_06025665.1| putative 4Fe-4S binding domain protein [Fusobacterium periodonticum
           ATCC 33693]
 gi|291380303|gb|EFE87821.1| putative 4Fe-4S binding domain protein [Fusobacterium periodonticum
           ATCC 33693]
          Length = 206

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 11/58 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           ++CI C  C  +CP   I  +S P           Y I+   C++CG C   CPV A+
Sbjct: 157 DKCIGCNKCVEVCPQNCIITDSVP-----------YVIEQNHCLHCGNCFTVCPVGAV 203


>gi|46581428|ref|YP_012236.1| pyruvate-ferredoxin oxidoreductase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120601398|ref|YP_965798.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing
           protein [Desulfovibrio vulgaris DP4]
 gi|46450850|gb|AAS97496.1| pyruvate-ferredoxin oxidoreductase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120561627|gb|ABM27371.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Desulfovibrio vulgaris DP4]
 gi|311235084|gb|ADP87938.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfovibrio
           vulgaris RCH1]
          Length = 1215

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 43/122 (35%), Gaps = 36/122 (29%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAI------------------TIESGPRCHDGTRR 92
            A+       E CI C  C  +CP  AI                  TI++  +  +G + 
Sbjct: 676 VAINVPEWLSENCIQCNQCSFVCPHAAIRPVLATTEELEGAPASFVTIDAKGKELNGLKY 735

Query: 93  TVRYDIDMIKCIYCGLCQEACPV--DAIVE----------GPNFEFATETRQELYYDKER 140
             R  +    C+ CG C E CP    A+V            PN  FA    +E    K+ 
Sbjct: 736 --RIQVFAQDCLGCGSCAEVCPAKNKALVMKPIETQLDAQVPNLAFA----EENIAIKDD 789

Query: 141 LL 142
           L+
Sbjct: 790 LM 791


>gi|15806869|ref|NP_295592.1| polyferredoxin [Deinococcus radiodurans R1]
 gi|6459648|gb|AAF11421.1|AE002026_9 polyferredoxin, putative [Deinococcus radiodurans R1]
          Length = 334

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 11/77 (14%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI-- 118
           + CI C +C  +CP QAIT    P         VR  +D+  C  C  C  +CP  AI  
Sbjct: 259 DSCIDCPVCANVCPTQAITRNLQPEGG------VRLLLDLSACTGCMACLRSCPPQAIHE 312

Query: 119 ---VEGPNFEFATETRQ 132
                 P FE     R+
Sbjct: 313 QRQWLSPAFELPILLRE 329



 Score = 42.4 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 9/53 (16%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C +C   CP +A+T+ +G             +ID  +C  CGLC ++CP  A+
Sbjct: 34  CAVCVDACPHEAVTVNAGGYAV---------EIDPERCTGCGLCVQSCPSGAL 77


>gi|148266186|ref|YP_001232892.1| sigma-54 dependent trancsriptional regulator [Geobacter
           uraniireducens Rf4]
 gi|146399686|gb|ABQ28319.1| sigma54 specific transcriptional regulator, Fis family [Geobacter
           uraniireducens Rf4]
          Length = 755

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 11/62 (17%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E+C  C  C   CP +AI +E               +I   +CI CG C   CP  A V 
Sbjct: 9   EKCRKCYSCVRSCPVKAIKVEKN-----------YSEIIFERCIGCGNCLSNCPQHAKVV 57

Query: 121 GP 122
             
Sbjct: 58  TD 59



 Score = 35.5 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 12/24 (50%)

Query: 101 IKCIYCGLCQEACPVDAIVEGPNF 124
            KC  C  C  +CPV AI    N+
Sbjct: 9   EKCRKCYSCVRSCPVKAIKVEKNY 32


>gi|299531430|ref|ZP_07044838.1| formate dehydrogenase, alpha subunit [Comamonas testosteroni S44]
 gi|298720593|gb|EFI61542.1| formate dehydrogenase, alpha subunit [Comamonas testosteroni S44]
          Length = 971

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 23/82 (28%), Gaps = 3/82 (3%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     SG                   C+ CG C +
Sbjct: 164 YFNYDPSKCIVCNRCVRACEETQGTFALTISGRGFESRITAGQGDGFMASDCVSCGACVQ 223

Query: 112 ACPVDAIVEGPNFEFATETRQE 133
           ACP   + E    E       E
Sbjct: 224 ACPTATLQEKTVVELGQSEHSE 245


>gi|298675844|ref|YP_003727594.1| RnfABCDGE type electron transport complex subunit C
           [Methanohalobium evestigatum Z-7303]
 gi|298288832|gb|ADI74798.1| electron transport complex, RnfABCDGE type, C subunit
           [Methanohalobium evestigatum Z-7303]
          Length = 453

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 31/83 (37%), Gaps = 3/83 (3%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T   P  K +T    + E  L  Y      CI C  C  ICP + +          G R
Sbjct: 332 YTDEVPVIKTTTGITIQTEDELPVY--NTYPCIHCTKCVDICPMELVPSRLAILADQG-R 388

Query: 92  RTVRYDIDMIKCIYCGLCQEACP 114
                ++ ++ CI CG C   CP
Sbjct: 389 FDECREMHVMNCIECGRCAAICP 411


>gi|288554818|ref|YP_003426753.1| dihydropyrimidine dehydrogenase subunit B [Bacillus pseudofirmus
           OF4]
 gi|288545978|gb|ADC49861.1| dihydropyrimidine dehydrogenase [Bacillus pseudofirmus OF4]
          Length = 428

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 20/65 (30%), Gaps = 4/65 (6%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               + CI C  C   C   +       +   G             C+ C LC   CPVD
Sbjct: 336 QINNDVCINCNKCHIACEDTSHQCIDMLKDDRGNDILKV---REDDCVGCNLCSIVCPVD 392

Query: 117 -AIVE 120
            AI  
Sbjct: 393 GAIDM 397


>gi|260891376|ref|ZP_05902639.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Leptotrichia
           hofstadii F0254]
 gi|260858759|gb|EEX73259.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Leptotrichia
           hofstadii F0254]
          Length = 1142

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/113 (18%), Positives = 34/113 (30%), Gaps = 28/113 (24%)

Query: 57  PNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRRTV-----------RYDIDM 100
               + CI C  C  +CP   I       E   +  +G                +  +  
Sbjct: 686 EWQPDMCIQCNQCAYVCPHAVIRPFLLDEEEMKKAPEGMPTIKALGRGMDGLEYKIQVSP 745

Query: 101 IKCIYCGLCQEACPVD---AIVE--------GPNFEFATETRQELYYDKERLL 142
           + C  C  C + CP     AIV             E+       + Y K+++L
Sbjct: 746 LDCTGCSACVDVCPAPRGKAIVMKSTQSQIERNEIEYTDYLFNNVSY-KDKIL 797


>gi|322417935|ref|YP_004197158.1| electron transfer flavoprotein alpha/beta-subunit [Geobacter sp.
           M18]
 gi|320124322|gb|ADW11882.1| Electron transfer flavoprotein alpha/beta-subunit [Geobacter sp.
           M18]
          Length = 447

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 11/60 (18%)

Query: 62  RCI-ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           RCI  C  CE+ CP  AI +                 +   KCI C  C +ACP +A+  
Sbjct: 19  RCIACCARCESSCPVDAIAMNPAGEP----------QVATEKCIGCVKCVKACPAEALEM 68


>gi|223985255|ref|ZP_03635337.1| hypothetical protein HOLDEFILI_02643 [Holdemania filiformis DSM
           12042]
 gi|223962767|gb|EEF67197.1| hypothetical protein HOLDEFILI_02643 [Holdemania filiformis DSM
           12042]
          Length = 243

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/92 (23%), Positives = 30/92 (32%), Gaps = 17/92 (18%)

Query: 31  KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT 90
             T   P ++      +R   AL   P    RC+ C  C  +CP QAI            
Sbjct: 145 PMTSPVPGQRP-----YRKITALPLKPQTNSRCLRCGRCAVVCPVQAIDPAQPRLTDK-- 197

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                      +C+ C  C + CP  A    P
Sbjct: 198 ----------TRCVSCTACIQVCPAGARQFPP 219


>gi|84490228|ref|YP_448460.1| hypothetical protein Msp_1447 [Methanosphaera stadtmanae DSM 3091]
 gi|84373547|gb|ABC57817.1| EhbK [Methanosphaera stadtmanae DSM 3091]
          Length = 451

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 32/91 (35%), Gaps = 10/91 (10%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93
           I  P      +   + +            C+ C +C   C  +AI  +            
Sbjct: 367 IYCPVNAIPKTSPLKMKIQSGYSMINNNLCVGCGVCIDACVFKAIAPDEEGNLK------ 420

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
               ID  +CIYCG C+ ACP  AI    +F
Sbjct: 421 ----IDNNRCIYCGACKTACPARAIKIQRDF 447



 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 26/67 (38%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           Y    ++C  C  C   CP  AI  +            V  D  MI CI C +C +ACP 
Sbjct: 180 YQVDMKKCALCYKCLIECPNDAIIEKDFELEIQQPEYDVENDTKMIGCIDCKVCADACPT 239

Query: 116 DAIVEGP 122
           + +    
Sbjct: 240 NGLQIIN 246



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 10/56 (17%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           CI C  CE +CP +AI             +   Y +D  KC  CG+C   CPV  I
Sbjct: 33  CITCGKCEKVCPNKAIFKN----------KFGGYVVDRTKCNLCGMCMNVCPVSVI 78



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 22/70 (31%), Gaps = 2/70 (2%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--DMIKCIYCGLCQE 111
            +       C  C +C   CP  A                 R ++  +   CI CG C  
Sbjct: 80  VKDGKIMGLCSNCGVCVPACPNNARMAPPKRPVQMEKEMVNRINVGTNHDDCIECGRCAY 139

Query: 112 ACPVDAIVEG 121
            CP ++I   
Sbjct: 140 FCPTNSIKFS 149



 Score = 37.4 bits (85), Expect = 0.66,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 3/65 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++C+ C+ C   CP  AI   S  +    +  ++   I+   C+ CG+C +AC   AI
Sbjct: 355 NFDKCVLCEKCGIYCPVNAIPKTSPLKMKIQSGYSM---INNNLCVGCGVCIDACVFKAI 411

Query: 119 VEGPN 123
                
Sbjct: 412 APDEE 416



 Score = 37.4 bits (85), Expect = 0.70,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 10/60 (16%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+ C  C   C   A    +     +             +CI CG+C E CP DA+    
Sbjct: 300 CVGCGGCIPECKYGARKFGNTSWNGE----------IGAQCIKCGICVEVCPKDALTIED 349



 Score = 37.0 bits (84), Expect = 0.77,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 11/67 (16%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                  +CI C +C  +CP  A+TIE                ++  KC+ C  C   CP
Sbjct: 322 WNGEIGAQCIKCGICVEVCPKDALTIEDKEV-----------KLNFDKCVLCEKCGIYCP 370

Query: 115 VDAIVEG 121
           V+AI + 
Sbjct: 371 VNAIPKT 377



 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 15/60 (25%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + CI C  C   CP  +I                   I+   C  C  C + CP +AI
Sbjct: 127 NHDDCIECGRCAYFCPTNSIKFS---------------YIEPGVCTKCDTCIDVCPRNAI 171


>gi|56696440|ref|YP_166797.1| formate dehydrogenase, alpha subunit [Ruegeria pomeroyi DSS-3]
 gi|56678177|gb|AAV94843.1| formate dehydrogenase, alpha subunit [Ruegeria pomeroyi DSS-3]
          Length = 926

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 10/87 (11%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114
             + CI C LC   C  +    +       G    V +D    +    C+ CG C +ACP
Sbjct: 150 NLDACINCNLCVRACR-EVQVNDVIGMAGRGAGAQVVFDQNDPMGASTCVACGECVQACP 208

Query: 115 VDAIVEGP--NFEFATETRQELYYDKE 139
             A++     + E A +++    YD+E
Sbjct: 209 TGALMPATVLDAEQAGDSKD---YDRE 232


>gi|116749279|ref|YP_845966.1| putative PAS/PAC sensor protein [Syntrophobacter fumaroxidans MPOB]
 gi|116698343|gb|ABK17531.1| putative PAS/PAC sensor protein [Syntrophobacter fumaroxidans MPOB]
          Length = 572

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 15/84 (17%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
                 C  C  C   CP +AI +E+               +    C+ CG C E CP  
Sbjct: 9   FTERTECQDCFKCIRECPVKAIKVENACAA-----------VIPQLCVLCGHCVEVCPNG 57

Query: 117 AIVEGPNFEFATETRQELYYDKER 140
           A     + E A    ++L  +K++
Sbjct: 58  AKHVRDDLEQA----RQLLKEKDQ 77


>gi|330835350|ref|YP_004410078.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Metallosphaera cuprina Ar-4]
 gi|329567489|gb|AEB95594.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Metallosphaera cuprina Ar-4]
          Length = 749

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 3/78 (3%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
             K          ++++       +C+ C  C   C A  +T +          R V  +
Sbjct: 291 ENKVKVPKY---ANSIKVEYEESLKCVNCGKCLDSCLAYNLTRDFARSPPGKFSRLVTEE 347

Query: 98  IDMIKCIYCGLCQEACPV 115
                C  C  CQEACPV
Sbjct: 348 TAFEPCFGCMNCQEACPV 365


>gi|294626911|ref|ZP_06705502.1| ferredoxin II [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|294665011|ref|ZP_06730320.1| ferredoxin II [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292598771|gb|EFF42917.1| ferredoxin II [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           11122]
 gi|292605230|gb|EFF48572.1| ferredoxin II [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 142

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 31/85 (36%), Gaps = 11/85 (12%)

Query: 39  EKGSTSPRFRGEHAL-RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
                  R RG H L +     E  CI C  C   CP  AI          G  + +   
Sbjct: 66  VPPRPYDRSRGAHKLPQVAWIVEADCIGCTKCIQACPVDAIV---------GGAKHMHTV 116

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           I  + C  C LC  ACPVD I   P
Sbjct: 117 IAPL-CTGCELCLPACPVDCIELHP 140


>gi|255524868|ref|ZP_05391817.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           carboxidivorans P7]
 gi|255511438|gb|EET87729.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           carboxidivorans P7]
          Length = 295

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 9/77 (11%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            + +C+ C  C  +C    +   S                    CI+C  C   CP  AI
Sbjct: 212 DQNKCMKCGKCTKVCSVCHLQQNSTK---------SIIKNMNSDCIHCFNCVLECPTKAI 262

Query: 119 VEGPNFEFATETRQELY 135
               + E A    +++ 
Sbjct: 263 TLVGDLEKAKGFMEKMI 279



 Score = 33.5 bits (75), Expect = 8.7,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 14/33 (42%)

Query: 84  PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
                  +R  +  ID  KC+ CG C + C V 
Sbjct: 197 KEKVWHEKRYPKITIDQNKCMKCGKCTKVCSVC 229


>gi|241765807|ref|ZP_04763747.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidovorax
           delafieldii 2AN]
 gi|241364289|gb|EER59444.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidovorax
           delafieldii 2AN]
          Length = 83

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 2/62 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +RC  C  C AICP   ++++       G +R V +D     C  C LC   CP  AI
Sbjct: 10  NPDRCTGCGWCVAICPPHVLSLQGQGDGRWGPKRAVLHD--AAGCTGCALCDVRCPFGAI 67

Query: 119 VE 120
             
Sbjct: 68  AM 69


>gi|229591377|ref|YP_002873496.1| dihydropyrimidine dehydrogenase [Pseudomonas fluorescens SBW25]
 gi|229363243|emb|CAY50336.1| putative dihydropyrimidine dehydrogenase [Pseudomonas fluorescens
           SBW25]
          Length = 424

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117
            +E CI C  C   C   +    +  +  DGT +   Y++   +C+ C LCQ  CPV D 
Sbjct: 341 DQEACIGCGRCHIACEDTSHQAIASLKQADGTHQ---YEVIDDECVGCNLCQITCPVADC 397

Query: 118 IVEGPN 123
           I   P 
Sbjct: 398 IEMVPI 403


>gi|226323625|ref|ZP_03799143.1| hypothetical protein COPCOM_01400 [Coprococcus comes ATCC 27758]
 gi|225207809|gb|EEG90163.1| hypothetical protein COPCOM_01400 [Coprococcus comes ATCC 27758]
          Length = 621

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 9/98 (9%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
           TT+ +   K      F     +R       +CI C  C  +C     ++ +    + GT+
Sbjct: 118 TTVRFENTKEQYPLDFSSPSIVR----DPNKCILCGDCVRMCD-NVQSVNAIDFAYRGTK 172

Query: 92  RTVRY----DIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
             V       I    C+ CG C+  CP  AI    N E
Sbjct: 173 ALVTPAFNKKIAETDCVNCGQCRVVCPTGAISINTNIE 210


>gi|171060402|ref|YP_001792751.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Leptothrix cholodnii SP-6]
 gi|170777847|gb|ACB35986.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Leptothrix
           cholodnii SP-6]
          Length = 743

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 24/73 (32%), Gaps = 9/73 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +RC  C  C   CP  A+             +          C+ CGLC   CP DAI
Sbjct: 605 DTQRCTMCLSCVGACPESALADNPERPQLRFIEKN---------CVQCGLCASTCPEDAI 655

Query: 119 VEGPNFEFATETR 131
              P    A   R
Sbjct: 656 QLQPRLLLADGGR 668



 Score = 38.2 bits (87), Expect = 0.45,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           ID+  C  C  C +ACP  AI      + A
Sbjct: 206 IDLDLCTRCNACIDACPEGAIDFSYQVDLA 235



 Score = 37.0 bits (84), Expect = 0.79,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 16/93 (17%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR------ 95
                FR +  L  +   E+  I C  C  +C A+AI  ++  +     R          
Sbjct: 312 EKPRFFRYQPKLCAHSRNEQ--IGCSACIYVCSARAIRSDASQKGKTQGRGPRPAGVAAM 369

Query: 96  --------YDIDMIKCIYCGLCQEACPVDAIVE 120
                     ++   C+ CG C   CP  A+  
Sbjct: 370 PVAASGGGIVVEPHLCVGCGACSTVCPSGALTF 402


>gi|220915362|ref|YP_002490666.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219953216|gb|ACL63600.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 1200

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 34/130 (26%), Gaps = 27/130 (20%)

Query: 31  KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG- 89
                +P     TS   +   AL         CI C  C  ICP  AI  +       G 
Sbjct: 668 PVDGTWP---TGTSKWEKRSIALEIPVWEPSLCIQCNKCALICPHAAIRPKFYGAEALGS 724

Query: 90  -------------TRRTVRY--DIDMIKCIYCGLCQEACP--------VDAIVEGPNFEF 126
                          +  +Y   +    C  C LC E CP          AI        
Sbjct: 725 APKGFLAMDYKSADVKGAKYSLQVAPDDCTGCTLCVEICPAESKTEKGKKAINMAEAMPL 784

Query: 127 ATETRQELYY 136
             + R    +
Sbjct: 785 KEKERANFEF 794


>gi|163760125|ref|ZP_02167208.1| putative NAD-dependent formate dehydrogenase alpha subunit [Hoeflea
           phototrophica DFL-43]
 gi|162282524|gb|EDQ32812.1| putative NAD-dependent formate dehydrogenase alpha subunit [Hoeflea
           phototrophica DFL-43]
          Length = 961

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 16/86 (18%), Positives = 25/86 (29%), Gaps = 3/86 (3%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDM 100
                 + +   +     +CI C  C   C     T      G          +      
Sbjct: 159 PKYMPKDESNPYFTYDPSKCIVCSRCVRACEEVQGTFALTIEGRGFESRVSPGMHESFMN 218

Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEF 126
            +C+ CG C +ACP   + E    E 
Sbjct: 219 SECVSCGACVQACPTATLQEKSVIEI 244



 Score = 34.3 bits (77), Expect = 6.3,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 24/88 (27%), Gaps = 23/88 (26%)

Query: 48  RGEHALRRYPNGEERCIAC---KLCEAICPAQA-------------------ITIESGPR 85
           RG   L    +    C+ C     CE    A A                      E+ P+
Sbjct: 102 RGVMEL-YISDHPLDCLTCAANGDCELQDMAGAVGLRDVRYGYEGENHVQARHNGEANPK 160

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                     +  D  KCI C  C  AC
Sbjct: 161 YMPKDESNPYFTYDPSKCIVCSRCVRAC 188


>gi|197120650|ref|YP_002132601.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Anaeromyxobacter sp. K]
 gi|196170499|gb|ACG71472.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Anaeromyxobacter sp. K]
          Length = 1200

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 34/130 (26%), Gaps = 27/130 (20%)

Query: 31  KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG- 89
                +P     TS   +   AL         CI C  C  ICP  AI  +       G 
Sbjct: 668 PVDGTWP---TGTSKWEKRSIALEIPVWEPSLCIQCNKCALICPHAAIRPKFYGAEALGS 724

Query: 90  -------------TRRTVRY--DIDMIKCIYCGLCQEACP--------VDAIVEGPNFEF 126
                          +  +Y   +    C  C LC E CP          AI        
Sbjct: 725 APKGFLAMDYKSADVKGAKYSLQVAPDDCTGCTLCVEICPAESKTEKGKKAINMAEAMPL 784

Query: 127 ATETRQELYY 136
             + R    +
Sbjct: 785 KEKERANFEF 794


>gi|145218852|ref|YP_001129561.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Prosthecochloris vibrioformis DSM 265]
 gi|145205016|gb|ABP36059.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Chlorobium
           phaeovibrioides DSM 265]
          Length = 522

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 31/85 (36%), Gaps = 16/85 (18%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           EKGS     R    LR     E  C+       ICP +A+           +R       
Sbjct: 41  EKGSFPDTRRYFTVLRCNHCEEPPCV------DICPVEALHKRDDGIVDFDSR------- 87

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPN 123
              +CI C  C +ACP +A+   P 
Sbjct: 88  ---RCIGCKACAQACPYNAVYIDPE 109



 Score = 40.9 bits (94), Expect = 0.065,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 7/75 (9%)

Query: 56  YPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTRRTVRYDIDMIKCIYCGL-- 108
           +     +CI C  C   C ++                 G+    R    +++C +C    
Sbjct: 5   FVIDGRKCIGCHACSVACKSENQVPLGVNRTWVKYVEKGSFPDTRRYFTVLRCNHCEEPP 64

Query: 109 CQEACPVDAIVEGPN 123
           C + CPV+A+ +  +
Sbjct: 65  CVDICPVEALHKRDD 79



 Score = 40.1 bits (92), Expect = 0.094,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 24/71 (33%), Gaps = 4/71 (5%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              RCI CK C   CP  A+ I+                   +K      C   CP  AI
Sbjct: 85  DSRRCIGCKACAQACPYNAVYIDPESGTTAKCSYCSHRVEIGMK----PACAVICPQQAI 140

Query: 119 VEGPNFEFATE 129
           V G   +  +E
Sbjct: 141 VSGDLDDPHSE 151


>gi|160899056|ref|YP_001564638.1| RnfABCDGE type electron transport complex subunit B [Delftia
           acidovorans SPH-1]
 gi|160364640|gb|ABX36253.1| electron transport complex, RnfABCDGE type, B subunit [Delftia
           acidovorans SPH-1]
          Length = 238

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 24/81 (29%), Gaps = 10/81 (12%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
             S     E         E  CI C LC   CP  AI   +             + +   
Sbjct: 71  PLSAEHGTEAPRTVAVIDEAWCIGCTLCIKACPTDAILGANK----------FMHTVIAA 120

Query: 102 KCIYCGLCQEACPVDAIVEGP 122
            C  C LC   CPVD I    
Sbjct: 121 HCTGCELCIPVCPVDCIELHN 141


>gi|83589306|ref|YP_429315.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica ATCC
           39073]
 gi|83572220|gb|ABC18772.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Moorella
           thermoacetica ATCC 39073]
          Length = 848

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 23/68 (33%), Gaps = 10/68 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY----CGLCQEACP 114
             ++C  C  C   CPA AI                 Y +D   C+     C  C  ACP
Sbjct: 105 DWQKCDHCGRCREACPAGAI------LPPHPRGLPRAYRLDHSCCLRAKEDCQACVAACP 158

Query: 115 VDAIVEGP 122
             AI   P
Sbjct: 159 RAAIELEP 166



 Score = 41.2 bits (95), Expect = 0.049,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 13/62 (20%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C AC  C   CP  A+ ++                +    C  CG+C   CP  A+   P
Sbjct: 784 CAACLTCVRTCPHGAMVVQGKAL------------VRTRSCQGCGICVAECPAHALEL-P 830

Query: 123 NF 124
            +
Sbjct: 831 EY 832



 Score = 39.7 bits (91), Expect = 0.12,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 27/85 (31%), Gaps = 15/85 (17%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR---------------RT 93
           G   L       E C  C +C      + +T         G                 R 
Sbjct: 40  GGRWLDYGCKAGEDCSRCNICLGFPLLEEVTSRENITLVTGMVVVGVTGTTGAFTASLRA 99

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAI 118
               ID  KC +CG C+EACP  AI
Sbjct: 100 TGPRIDWQKCDHCGRCREACPAGAI 124


>gi|150391071|ref|YP_001321120.1| indolepyruvate ferredoxin oxidoreductase [Alkaliphilus
           metalliredigens QYMF]
 gi|149950933|gb|ABR49461.1| Indolepyruvate ferredoxin oxidoreductase [Alkaliphilus
           metalliredigens QYMF]
          Length = 604

 Score = 45.5 bits (106), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 6/75 (8%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R       +    + CI+C+ C                        ++  ID   C+ C 
Sbjct: 529 RYNLEKPYFYVDPKICISCRACIR------TNCPPLRMIEYEGIEKLKSSIDKDMCVGCS 582

Query: 108 LCQEACPVDAIVEGP 122
           +C + CPV+AI    
Sbjct: 583 VCAQVCPVNAIKSSK 597


>gi|315186948|gb|EFU20706.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
           [Spirochaeta thermophila DSM 6578]
          Length = 583

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 31/84 (36%), Gaps = 7/84 (8%)

Query: 59  GEERCIACKLCEAICPAQAITIE-SGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115
              +C+ C  C  +C +             DGTR     DI +    CI CG C   CPV
Sbjct: 144 DPSKCVKCGRCVNVCQSMQNVWALEFLGRGDGTRIAPAGDIALNDSPCIKCGQCSAHCPV 203

Query: 116 DAIVEGPNFEFATETRQELYYDKE 139
            AI E  +    T    E   D E
Sbjct: 204 GAIYEKDD----TRKVWEAIMDPE 223


>gi|315917799|ref|ZP_07914039.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313691674|gb|EFS28509.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 316

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 28/92 (30%), Gaps = 11/92 (11%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
                  P  K  T      +            CI C +C+  CP  AI + +       
Sbjct: 189 KSVIAMTPVAKKVTVKCMSKDKGGDAKKACGIACIGCGMCQRTCPFGAIEVSNNLA---- 244

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
                   ID  KC  C LC   CP  AI  G
Sbjct: 245 -------KIDPAKCKNCQLCVVVCPTKAIYTG 269



 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 59  GEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIK---CIYCGLCQEAC 113
            EE CI+C LC   CP    A+T  +         +    D        CI CG+CQ  C
Sbjct: 173 DEEACISCGLCVKACPKSVIAMTPVAKKVTVKCMSKDKGGDAKKACGIACIGCGMCQRTC 232

Query: 114 PVDAIVEGPN 123
           P  AI    N
Sbjct: 233 PFGAIEVSNN 242



 Score = 42.4 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 10/67 (14%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
             + +  C+    CE +CP  AI +                 +D   CI CGLC +ACP 
Sbjct: 140 DKSCKYGCLGYGDCERVCPVGAIVVNEKGIAS----------VDEEACISCGLCVKACPK 189

Query: 116 DAIVEGP 122
             I   P
Sbjct: 190 SVIAMTP 196


>gi|302671546|ref|YP_003831506.1| aldo/keto reductase family oxidoreductase [Butyrivibrio
           proteoclasticus B316]
 gi|302396019|gb|ADL34924.1| oxidoreductase aldo/keto reductase family [Butyrivibrio
           proteoclasticus B316]
          Length = 370

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 12/81 (14%), Positives = 21/81 (25%), Gaps = 6/81 (7%)

Query: 55  RYPNGEERCIACKLCEAICPA------QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
            Y +    C+ C  C+                 S            +  +    CI CG 
Sbjct: 284 HYFHSGGECVYCNHCQPCPVHIDIGLVNKYYDLSRIGDKLADGHYDKLQVKADSCIMCGH 343

Query: 109 CQEACPVDAIVEGPNFEFATE 129
           C++ CP          + +  
Sbjct: 344 CEQVCPFHVKQMKRMKDISDY 364


>gi|260892089|ref|YP_003238186.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Ammonifex
           degensii KC4]
 gi|260864230|gb|ACX51336.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Ammonifex
           degensii KC4]
          Length = 591

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 9/65 (13%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           R  P  EE C  C LC  +           P      R   +  ID + C+ CGLC + C
Sbjct: 529 RPLPYREEVCRGCGLCLEL---------GCPALALKDRSRRKIVIDPLLCVGCGLCAQVC 579

Query: 114 PVDAI 118
           P  A+
Sbjct: 580 PFGAL 584


>gi|260597798|ref|YP_003210369.1| electron transport complex protein RnfB [Cronobacter turicensis
           z3032]
 gi|260216975|emb|CBA30620.1| Electron transport complex protein rnfB [Cronobacter turicensis
           z3032]
          Length = 171

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 22/75 (29%), Gaps = 10/75 (13%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
             E         E  CI C  C   CP  AI   +             + +    C  C 
Sbjct: 81  MAEPVRMLAVIDEPNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCN 130

Query: 108 LCQEACPVDAIVEGP 122
           LC + CP   I   P
Sbjct: 131 LCVDPCPTQCIELRP 145


>gi|284176087|ref|ZP_06390056.1| oxidoreductase [Sulfolobus solfataricus 98/2]
 gi|261602958|gb|ACX92561.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           solfataricus 98/2]
          Length = 455

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/92 (30%), Positives = 36/92 (39%), Gaps = 17/92 (18%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
               L  Y NG  R  AC +CE  CP  AI ++          +    +I   KC  CGL
Sbjct: 109 KPVYLSEYCNGLYR--ACNVCELSCPYNAIKVD----------KKTGVNIIYTKCTSCGL 156

Query: 109 CQEACPVDAIVE-----GPNFEFATETRQELY 135
           C  +CPV AI          FE A    ++  
Sbjct: 157 CVASCPVSAIQFPSLSQNSIFELAKVKGEKRI 188



 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 23/68 (33%), Gaps = 7/68 (10%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
            + L        RC  C+ C   CP  AI +                D D +KCI C +C
Sbjct: 290 PYILFDVNIDNNRCTLCESCVNWCPTSAIMLRRSSGVE-------EIDFDPMKCIGCNIC 342

Query: 110 QEACPVDA 117
              CP   
Sbjct: 343 VNVCPESC 350


>gi|254509402|ref|ZP_05121485.1| electron transport complex protein RnfB [Vibrio parahaemolyticus
           16]
 gi|219547676|gb|EED24718.1| electron transport complex protein RnfB [Vibrio parahaemolyticus
           16]
          Length = 193

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 10/66 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E+ CI C  C   CP  AI   +             + +   +C  C LC   CP D
Sbjct: 107 FIHEDMCIGCTKCIQACPVDAIVGGTK----------ALHTVIKDECTGCDLCVAPCPTD 156

Query: 117 AIVEGP 122
            I   P
Sbjct: 157 CIEMIP 162


>gi|220904268|ref|YP_002479580.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219868567|gb|ACL48902.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 366

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 11/73 (15%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                 ++ CI C  C   CP QA+++                 ++  +CI C  C   C
Sbjct: 186 THVSINKDDCIGCAKCVHSCPQQALSMRDHKSH-----------VETARCIGCFECMTVC 234

Query: 114 PVDAIVEGPNFEF 126
           P  AIV     E 
Sbjct: 235 PAKAIVIDWATEM 247



 Score = 38.5 bits (88), Expect = 0.31,   Method: Composition-based stats.
 Identities = 9/40 (22%), Positives = 13/40 (32%)

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
                 I+   CI C  C  +CP  A+    +       R
Sbjct: 184 HATHVSINKDDCIGCAKCVHSCPQQALSMRDHKSHVETAR 223


>gi|164688083|ref|ZP_02212111.1| hypothetical protein CLOBAR_01728 [Clostridium bartlettii DSM
           16795]
 gi|164602496|gb|EDQ95961.1| hypothetical protein CLOBAR_01728 [Clostridium bartlettii DSM
           16795]
          Length = 628

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 12/81 (14%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
             K    P  +    L         CI C LC+  CPA+AI  E   +          + 
Sbjct: 557 HVKDKKCPAAKCTAMLNYVITD--DCIGCGLCKKNCPAEAINGEKKQK----------HV 604

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID  KC+ CG C E C   AI
Sbjct: 605 IDTTKCLKCGACMEKCKKGAI 625



 Score = 37.4 bits (85), Expect = 0.68,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 9/72 (12%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
            ++            + Y I    CI CGLC++ CP +AI          E +Q+   D 
Sbjct: 557 HVKDKKCPAAKCTAMLNYVI-TDDCIGCGLCKKNCPAEAIN--------GEKKQKHVIDT 607

Query: 139 ERLLNNGDRWES 150
            + L  G   E 
Sbjct: 608 TKCLKCGACMEK 619


>gi|119489272|ref|ZP_01622079.1| NAD-reducing hydrogenase subunit U [Lyngbya sp. PCC 8106]
 gi|119454746|gb|EAW35891.1| NAD-reducing hydrogenase subunit U [Lyngbya sp. PCC 8106]
          Length = 238

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 10/91 (10%)

Query: 55  RYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLCQ 110
           ++     RCI C  C  +C     A   +   R  D    T        +  C  CG C 
Sbjct: 140 QFGIDHNRCILCTRCVRVCDEIEGAHVWDVAGRGADAKVITGLNQPWGQVSACTSCGKCV 199

Query: 111 EACPVDAIVEGPNFEFATETRQELYYDKERL 141
           +ACP  +I           T +E+ +D  +L
Sbjct: 200 DACPTGSIFRK------GSTVEEMIHDHSKL 224


>gi|147920868|ref|YP_685325.1| tungsten formylmethanofuran dehydrogenase, subunit G [uncultured
           methanogenic archaeon RC-I]
 gi|110620721|emb|CAJ35999.1| tungsten formylmethanofuran dehydrogenase, subunit G [uncultured
           methanogenic archaeon RC-I]
          Length = 82

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 20/68 (29%), Gaps = 4/68 (5%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRT----VRYDIDMIKCIYCGLCQEACPV 115
              C  C  C   CP  A+ +                     +D   C  CG+C E CP 
Sbjct: 15  NRTCTGCNNCVVACPVNALELTVANPVTKKKTYNVLNGKAVVVDEEVCNGCGICLEVCPQ 74

Query: 116 DAIVEGPN 123
            AI     
Sbjct: 75  RAITLTTE 82



 Score = 33.9 bits (76), Expect = 6.6,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 12/25 (48%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEG 121
           DI    C  C  C  ACPV+A+   
Sbjct: 12  DIQNRTCTGCNNCVVACPVNALELT 36


>gi|257076285|ref|ZP_05570646.1| putative ATPase RIL [Ferroplasma acidarmanus fer1]
          Length = 590

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 21/63 (33%), Gaps = 2/63 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESG-PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
             ERC   K C   C      + SG        +      I    CI CG+C   CP  A
Sbjct: 7   DRERCHP-KKCNHECRYYCPPVRSGAKTIEFPGQSDDFPVITESLCIGCGICVNRCPFGA 65

Query: 118 IVE 120
           I  
Sbjct: 66  IKI 68


>gi|326329869|ref|ZP_08196186.1| ferredoxin--NADP reductase [Nocardioidaceae bacterium Broad-1]
 gi|325952336|gb|EGD44359.1| ferredoxin--NADP reductase [Nocardioidaceae bacterium Broad-1]
          Length = 560

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 22/64 (34%), Gaps = 3/64 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + C A   C   CP   I    G     G        +D   C+ CG C  ACP
Sbjct: 1   MPHVVTQSCCADASCVVACPVNCIHPAPGE---PGFGEAEMLYVDAKSCVDCGACVTACP 57

Query: 115 VDAI 118
            DAI
Sbjct: 58  ADAI 61


>gi|317059515|ref|ZP_07924000.1| electron transport complex [Fusobacterium sp. 3_1_5R]
 gi|313685191|gb|EFS22026.1| electron transport complex [Fusobacterium sp. 3_1_5R]
          Length = 316

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 28/92 (30%), Gaps = 11/92 (11%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
                  P  K  T      +            CI C +C+  CP  AI + +       
Sbjct: 189 KSVIAMTPVAKKVTVKCMSKDKGGDAKKACGIACIGCGMCQRTCPFGAIEVSNNLA---- 244

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
                   ID  KC  C LC   CP  AI  G
Sbjct: 245 -------KIDPAKCKNCQLCVVVCPTKAIYTG 269



 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 59  GEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIK---CIYCGLCQEAC 113
            EE CI+C LC   CP    A+T  +         +    D        CI CG+CQ  C
Sbjct: 173 DEEACISCGLCVKACPKSVIAMTPVAKKVTVKCMSKDKGGDAKKACGIACIGCGMCQRTC 232

Query: 114 PVDAIVEGPN 123
           P  AI    N
Sbjct: 233 PFGAIEVSNN 242



 Score = 42.4 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 10/67 (14%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
             + +  C+    CE +CP  AI +                 +D   CI CGLC +ACP 
Sbjct: 140 DKSCKYGCLGYGDCERVCPVGAIVVNEKGIAS----------VDEEACISCGLCVKACPK 189

Query: 116 DAIVEGP 122
             I   P
Sbjct: 190 SVIAMTP 196


>gi|310779216|ref|YP_003967549.1| hydrogenase large subunit domain protein [Ilyobacter polytropus DSM
           2926]
 gi|309748539|gb|ADO83201.1| hydrogenase large subunit domain protein [Ilyobacter polytropus DSM
           2926]
          Length = 480

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 6/65 (9%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEAC 113
            E+CI C LC   C   AI     P     T   +  D      I+  KC+ CG C  AC
Sbjct: 153 PEKCIGCGLCAKSCDYYAIVKLERPCERACTLNAITKDENGAADINKDKCVACGACHVAC 212

Query: 114 PVDAI 118
           P  AI
Sbjct: 213 PFGAI 217



 Score = 38.5 bits (88), Expect = 0.28,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 5/61 (8%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-----IDMIKCIYCGLCQEACPVDA 117
           C  C   +           +    +   R  + +D     I   KCI CGLC ++C   A
Sbjct: 111 CDVCPSGKYYATDLCRNCIAHNCTNVCPRDAIVFDDGRAKIIPEKCIGCGLCAKSCDYYA 170

Query: 118 I 118
           I
Sbjct: 171 I 171


>gi|261402608|ref|YP_003246832.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus vulcanius M7]
 gi|261369601|gb|ACX72350.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus vulcanius M7]
          Length = 247

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 28/89 (31%), Gaps = 11/89 (12%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +              R     +  C+ C +C   CP  AI  +              
Sbjct: 170 CPKKCIKVENEIGDVIRTRDIDVNKNLCVGCFVCIEECPVNAIDQDGDKV---------- 219

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
             I+  KCI CG C + CP +AI      
Sbjct: 220 -KINKEKCILCGRCVDVCPTNAIKMWDIH 247



 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 10/88 (11%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
           P    +  L+ Y   EE+CI C +C   CP  AI +           R    ++++  C+
Sbjct: 112 PVPHRKIRLKSYQLDEEKCIKCGICARFCPTNAIKVV----------RRKSIEVNLDLCM 161

Query: 105 YCGLCQEACPVDAIVEGPNFEFATETRQ 132
            CG C+  CP   I           TR 
Sbjct: 162 GCGACESVCPKKCIKVENEIGDVIRTRD 189



 Score = 41.6 bits (96), Expect = 0.033,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 15/73 (20%)

Query: 61  ERCIACKLCEAICPAQA---------------ITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++C+ C++C   CP  A                 +           R   Y +D  KCI 
Sbjct: 73  DKCVKCEICAQTCPVGAIYVIEGEAEVKDEEVHYLIKEKPVPHRKIRLKSYQLDEEKCIK 132

Query: 106 CGLCQEACPVDAI 118
           CG+C   CP +AI
Sbjct: 133 CGICARFCPTNAI 145



 Score = 40.5 bits (93), Expect = 0.076,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C+ C  CE++CP + I +E+         RT   D++   C+ C +C E CPV+AI
Sbjct: 160 CMGCGACESVCPKKCIKVENEIGDVI---RTRDIDVNKNLCVGCFVCIEECPVNAI 212



 Score = 38.9 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 9/63 (14%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E +C+ C LC   CP  AI                   I   KC+ C +C + CPV 
Sbjct: 38  YIDETKCVRCNLCYKECPVNAIEKAKVKNPA---------KIIEDKCVKCEICAQTCPVG 88

Query: 117 AIV 119
           AI 
Sbjct: 89  AIY 91


>gi|188586889|ref|YP_001918434.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351576|gb|ACB85846.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 226

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 12/84 (14%)

Query: 47  FRGEHALRRYPNGEERCIACK---LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103
           + GE     +    E CI C+   +C  +CP  AI    G     G R      ID  +C
Sbjct: 109 WNGEGLFGNFRIIPETCIQCEEPVMCAEVCPQNAI----GSHPETGARV-----IDEDEC 159

Query: 104 IYCGLCQEACPVDAIVEGPNFEFA 127
           + CG C +ACP + I   PN   A
Sbjct: 160 VGCGECVDACPWEMIAMDPNDNVA 183



 Score = 33.5 bits (75), Expect = 9.4,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 25/91 (27%), Gaps = 22/91 (24%)

Query: 55  RYPNGEERCIACKLCEAICPA-------------------QAITIESGPRCHDGTRRTVR 95
                  RC  C+ CE IC                           S     +G      
Sbjct: 58  MLVVDSTRCSGCRRCETICSVFNRGSSNPNVSGIKIARNQNYGQQSSTLGFWNGEGLFGN 117

Query: 96  YDIDMIKCIYCG---LCQEACPVDAIVEGPN 123
           + I    CI C    +C E CP +AI   P 
Sbjct: 118 FRIIPETCIQCEEPVMCAEVCPQNAIGSHPE 148


>gi|163814709|ref|ZP_02206098.1| hypothetical protein COPEUT_00860 [Coprococcus eutactus ATCC 27759]
 gi|158450344|gb|EDP27339.1| hypothetical protein COPEUT_00860 [Coprococcus eutactus ATCC 27759]
          Length = 484

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 22/70 (31%), Gaps = 8/70 (11%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY--------DIDMIKCIYCGL 108
                +C  C  C   CP  AI     P         +           ID  KCI CG 
Sbjct: 125 YIDPSKCKECGQCAKACPYNAIADLMRPCIKSCPVGAISVAENGTGIAVIDKDKCIDCGS 184

Query: 109 CQEACPVDAI 118
           C   CP  AI
Sbjct: 185 CIHKCPFGAI 194



 Score = 37.4 bits (85), Expect = 0.68,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 13/60 (21%)

Query: 61  ERCIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C  C    C+  C   AI++                 ID  KC  CG C +ACP +AI
Sbjct: 98  DNCQKCMGRACQQACRFGAISMGRDKSY-----------IDPSKCKECGQCAKACPYNAI 146


>gi|110669517|ref|YP_659328.1| ferredoxin II [Haloquadratum walsbyi DSM 16790]
 gi|109627264|emb|CAJ53754.1| ferredoxin II [Haloquadratum walsbyi DSM 16790]
          Length = 106

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 28/82 (34%), Gaps = 7/82 (8%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P E            A+       + CIA   C   CP    T    P      R+    
Sbjct: 25  PTEPPEQLGIHGTHVAV-----DYDICIADGACLDSCPVDVFTWVETPGHPQSDRKVEPS 79

Query: 97  DIDMIKCIYCGLCQEACPVDAI 118
                +CI C LC + CPVDAI
Sbjct: 80  --HEAQCIDCMLCVDICPVDAI 99


>gi|11499958|ref|NP_071204.1| iron-sulfur cluster binding protein [Archaeoglobus fulgidus DSM
           4304]
 gi|2650715|gb|AAB91284.1| iron-sulfur cluster binding protein [Archaeoglobus fulgidus DSM
           4304]
          Length = 283

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 12/63 (19%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            E+C +C LC  +C   A+  E G            Y +D  KC  C  C   CP  AI 
Sbjct: 64  PEKCSSCGLCYDLCRFGAVVAEDG------------YYVDEKKCEGCAFCFNVCPERAIE 111

Query: 120 EGP 122
              
Sbjct: 112 MEN 114


>gi|114563344|ref|YP_750857.1| electron transport complex protein RnfB [Shewanella frigidimarina
           NCIMB 400]
 gi|114334637|gb|ABI72019.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           frigidimarina NCIMB 400]
          Length = 193

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 24/66 (36%), Gaps = 10/66 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E+ CI C  C   CP  AI               + + +    C  C LC E CPVD
Sbjct: 109 YIREDECIGCTKCIQACPVDAILGAGK----------LMHTVIAKDCTGCDLCVEPCPVD 158

Query: 117 AIVEGP 122
            I   P
Sbjct: 159 CIDMIP 164


>gi|325281384|ref|YP_004253926.1| Fe-S center protein, putative ferredoxin [Odoribacter splanchnicus
           DSM 20712]
 gi|324313193|gb|ADY33746.1| uncharacterized Fe-S center protein, putative ferredoxin
           [Odoribacter splanchnicus DSM 20712]
          Length = 372

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 17/79 (21%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + C  C +C   C  +AI  ++               ID  +C+ CG C   C  DA 
Sbjct: 192 DSQNCKKCGICIKHCAHEAIHFDAQHIAE----------IDYSRCVGCGQCVALCQYDAA 241

Query: 119 VEGP-------NFEFATET 130
           V G        N++ A  T
Sbjct: 242 VMGESDTSERLNYKIAEYT 260


>gi|309389873|gb|ADO77753.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
           [Halanaerobium praevalens DSM 2228]
          Length = 573

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 3/78 (3%)

Query: 59  GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMI--KCIYCGLCQEACPV 115
              +CI C  C  IC   Q ++          +  T  +D+      C  CG C   CPV
Sbjct: 147 DPNKCILCGRCVRICEEVQGVSALQFTERGFDSIVTTAFDLPQAEINCANCGQCATVCPV 206

Query: 116 DAIVEGPNFEFATETRQE 133
            AI E    +      ++
Sbjct: 207 GAITEINEIDKVWAALED 224


>gi|297570569|ref|YP_003691913.1| formate dehydrogenase, alpha subunit [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296926484|gb|ADH87294.1| formate dehydrogenase, alpha subunit [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 1326

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              +CI C+ C   C  +AI + +      G  R + ++  +  C+ CG C + C   A+
Sbjct: 577 DLNKCIYCRNCTDSCEYRAIDLTAESFDDKGRARGISFN-FLDSCVSCGKCVDNCSTGAL 635

Query: 119 VEGPN 123
            +   
Sbjct: 636 NKKDQ 640



 Score = 34.7 bits (78), Expect = 3.9,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 11/79 (13%)

Query: 54  RRYPNGEERCIACKL-----C---EAICPAQAITIESGPRCHDGTRRTVRY---DIDMIK 102
           +   N  ERC++C       C              ++G        R   +    +D+ K
Sbjct: 521 QMAKNEAERCLSCGCTAFDRCDLKREFISHGLDPNKTGMATKPVYPRRTDHPTIAVDLNK 580

Query: 103 CIYCGLCQEACPVDAIVEG 121
           CIYC  C ++C   AI   
Sbjct: 581 CIYCRNCTDSCEYRAIDLT 599


>gi|260772822|ref|ZP_05881738.1| iron-sulfur cluster-binding protein [Vibrio metschnikovii CIP
           69.14]
 gi|260611961|gb|EEX37164.1| iron-sulfur cluster-binding protein [Vibrio metschnikovii CIP
           69.14]
          Length = 553

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 31/103 (30%), Gaps = 28/103 (27%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C  C  C A+CP +A+                        C+ CGLC  ACP   +  
Sbjct: 418 QDCTLCMSCVAVCPTRALHHSGDIPALH---------FTEQDCVQCGLCVTACPEKVLTA 468

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            P                     N D  E +  + +  + P R
Sbjct: 469 VPR-------------------INWDHDERQAAQVLHQEEPAR 492



 Score = 40.5 bits (93), Expect = 0.090,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 6/54 (11%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           C+ C   CPA A++ E   +         R +I+   C   G C  ACP +AI 
Sbjct: 186 CERCVDACPAGALSSEGSAQTGH------RIEINPYLCQGIGTCATACPTEAIH 233


>gi|257466645|ref|ZP_05630956.1| electron transport complex, RnfABCDGE type, B subunit
           [Fusobacterium gonidiaformans ATCC 25563]
          Length = 312

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 28/92 (30%), Gaps = 11/92 (11%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
                  P  K  T      +            CI C +C+  CP  AI + +       
Sbjct: 185 KSVIAMTPVAKKVTVKCMSKDKGGDAKKACGIACIGCGMCQRTCPFGAIEVSNNLA---- 240

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
                   ID  KC  C LC   CP  AI  G
Sbjct: 241 -------KIDPAKCKNCQLCVVVCPTKAIYTG 265



 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 59  GEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIK---CIYCGLCQEAC 113
            EE CI+C LC   CP    A+T  +         +    D        CI CG+CQ  C
Sbjct: 169 DEEACISCGLCVKACPKSVIAMTPVAKKVTVKCMSKDKGGDAKKACGIACIGCGMCQRTC 228

Query: 114 PVDAIVEGPN 123
           P  AI    N
Sbjct: 229 PFGAIEVSNN 238



 Score = 42.4 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 10/67 (14%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
             + +  C+    CE +CP  AI +                 +D   CI CGLC +ACP 
Sbjct: 136 DKSCKYGCLGYGDCERVCPVGAIVVNEKGIAS----------VDEEACISCGLCVKACPK 185

Query: 116 DAIVEGP 122
             I   P
Sbjct: 186 SVIAMTP 192


>gi|256810025|ref|YP_003127394.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus fervens AG86]
 gi|256793225|gb|ACV23894.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus fervens AG86]
          Length = 176

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 63  CIACKLCEAICPAQAITIESGP--RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           CI C+ C  +CP +AI +      +  +   +     I+  +CIYC  C + CPV ++ 
Sbjct: 66  CIGCEGCANVCPTKAIEMIPTEPVKITENYVKDKIPKINPERCIYCLYCHDFCPVFSVF 124



 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 10/26 (38%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGP 122
            +    CI C  C   CP  AI   P
Sbjct: 60  TVIEELCIGCEGCANVCPTKAIEMIP 85


>gi|218884037|ref|YP_002428419.1| iindolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Desulfurococcus kamchatkensis 1221n]
 gi|218765653|gb|ACL11052.1| iindolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Desulfurococcus kamchatkensis 1221n]
          Length = 634

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 30/97 (30%), Gaps = 13/97 (13%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
           +   Y  +    +     K   +   R    +  Y    E+C  C+ C A     AI + 
Sbjct: 546 IIGEYLVRKGVNVVI--AKHPCALEERRTKHVEPYVVDAEKCTGCRACIASTGCPAIIMV 603

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            G              I    C  CGLC   C  DAI
Sbjct: 604 EGKAY-----------IIEEDCNGCGLCVRYCQYDAI 629


>gi|206602054|gb|EDZ38536.1| NADH dehydrogenase (quinone), chain G [Leptospirillum sp. Group II
           '5-way CG']
          Length = 903

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 19/60 (31%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              RCI C  C  IC         G                 + C +CG C E CP  AI
Sbjct: 142 NANRCILCGKCVRICDEIQDVHAIGFINRGFDTIIGPPLGKKLDCEFCGDCLEVCPTGAI 201



 Score = 33.9 bits (76), Expect = 6.6,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 20/80 (25%), Gaps = 8/80 (10%)

Query: 42  STSPRFRGEHALRRYPNGEERCIAC---KLCEAICPAQAI-----TIESGPRCHDGTRRT 93
                 R  +      +    C  C     C     + A        ES         ++
Sbjct: 77  PKIHDARKTNLELLLLHHPLDCPVCDCGGECPLQNMSFAYGATESRFESHRNDEPEDLKS 136

Query: 94  VRYDIDMIKCIYCGLCQEAC 113
                +  +CI CG C   C
Sbjct: 137 DVLVFNANRCILCGKCVRIC 156


>gi|124515810|gb|EAY57319.1| NADH dehydrogenase (quinone), chain G [Leptospirillum rubarum]
          Length = 903

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 19/60 (31%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              RCI C  C  IC         G                 + C +CG C E CP  AI
Sbjct: 142 NANRCILCGKCVRICDEIQDVHAIGFINRGFDTIIGPPLGKKLDCEFCGDCLEVCPTGAI 201



 Score = 33.9 bits (76), Expect = 6.6,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 20/80 (25%), Gaps = 8/80 (10%)

Query: 42  STSPRFRGEHALRRYPNGEERCIAC---KLCEAICPAQAI-----TIESGPRCHDGTRRT 93
                 R  +      +    C  C     C     + A        ES         ++
Sbjct: 77  PKIHDARKTNLELLLLHHPLDCPVCDCGGECPLQNMSFAYGATESRFESHRNDEPEDLKS 136

Query: 94  VRYDIDMIKCIYCGLCQEAC 113
                +  +CI CG C   C
Sbjct: 137 DVLVFNANRCILCGKCVRIC 156


>gi|124514072|ref|XP_001350392.1| RNAse L inhibitor protein, putative [Plasmodium falciparum 3D7]
 gi|23615809|emb|CAD52801.1| RNAse L inhibitor protein, putative [Plasmodium falciparum 3D7]
          Length = 619

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 1/70 (1%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           LR      ++C   K C   C      +++G  C +    +    I    CI CG+C + 
Sbjct: 20  LRIAIVSSDKCKP-KKCHLECKKNCPIVKTGKFCIEVDHASKIAYISETLCIGCGICVKK 78

Query: 113 CPVDAIVEGP 122
           CP  +I    
Sbjct: 79  CPFTSISIIN 88


>gi|331085092|ref|ZP_08334178.1| hypothetical protein HMPREF0987_00481 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330407875|gb|EGG87365.1| hypothetical protein HMPREF0987_00481 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 263

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 31/83 (37%), Gaps = 11/83 (13%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P+E          E            CI C++C+ +CPA AI +E+             
Sbjct: 191 VPYEAKHLVQCSSKEKGKDVMAVCSTGCIGCRMCQKVCPADAIVVENNLA---------- 240

Query: 96  YDIDMIKCIYCGLCQEACPVDAI 118
             ID  KC  CG C E CP   I
Sbjct: 241 -WIDPEKCTNCGACAEKCPKKII 262



 Score = 38.5 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 5/70 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCH-----DGTRRTVRYDIDMIKCIYCGLCQEAC 113
            +E C AC  C   CP   I +      H        +      +    CI C +CQ+ C
Sbjct: 169 DKEACKACGKCIKACPKNLIELVPYEAKHLVQCSSKEKGKDVMAVCSTGCIGCRMCQKVC 228

Query: 114 PVDAIVEGPN 123
           P DAIV   N
Sbjct: 229 PADAIVVENN 238



 Score = 34.3 bits (77), Expect = 5.8,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 11/66 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            + +  C     C   CP  AI I  G              +D   C  CG C +ACP +
Sbjct: 138 KSCDYGCCGFGTCVKACPFDAIHIVDGVAV-----------VDKEACKACGKCIKACPKN 186

Query: 117 AIVEGP 122
            I   P
Sbjct: 187 LIELVP 192


>gi|330826439|ref|YP_004389742.1| methyl-viologen-reducing hydrogenase subunit delta [Alicycliphilus
           denitrificans K601]
 gi|329311811|gb|AEB86226.1| methyl-viologen-reducing hydrogenase delta subunit [Alicycliphilus
           denitrificans K601]
          Length = 527

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 26/75 (34%), Gaps = 7/75 (9%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
                   R   A+       E C  C  C   CP  AIT+ + P    G R      + 
Sbjct: 296 PPFLPTATRQAVAVVY----PEHCSGCARCFDDCPYSAITMVAHPNGKPGMRLA---QVR 348

Query: 100 MIKCIYCGLCQEACP 114
              C  CG+C  +CP
Sbjct: 349 ADLCASCGICAGSCP 363


>gi|330828686|ref|YP_004391638.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing
           protein [Aeromonas veronii B565]
 gi|328803822|gb|AEB49021.1| Pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Aeromonas veronii B565]
          Length = 1181

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 26/102 (25%), Gaps = 18/102 (17%)

Query: 31  KTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP---- 84
             +   P        +   +   A        E C  C  C A CP  AI  +       
Sbjct: 660 PVSAFPPDGTWPVGTTRWEKRNIAKEIPIWEAELCTQCNYCVAACPHSAIRAKVVEPDAL 719

Query: 85  ------------RCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                       +  D   +     +    C  C LC E CP
Sbjct: 720 AAAPATLDALDVKSRDMRGQQYVLQVAPEDCTGCNLCVEVCP 761


>gi|320355287|ref|YP_004196626.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfobulbus
           propionicus DSM 2032]
 gi|320123789|gb|ADW19335.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfobulbus
           propionicus DSM 2032]
          Length = 248

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/103 (25%), Positives = 38/103 (36%), Gaps = 17/103 (16%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
           T +YP +  +   RFRG   +    +        + C A+CP +AI  E           
Sbjct: 15  TSSYPTKPIALYSRFRGIPEINADCDPAIA----RQCAALCPQEAIIAEEKK-------- 62

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
                ID+ +C +CG C        +    NFE  T  R  L 
Sbjct: 63  -----IDLGRCTFCGACALVANGAFVRFTQNFELGTAHRDHLI 100


>gi|313897420|ref|ZP_07830963.1| 4Fe-4S binding domain protein [Clostridium sp. HGF2]
 gi|312957790|gb|EFR39415.1| 4Fe-4S binding domain protein [Clostridium sp. HGF2]
          Length = 263

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 25/80 (31%), Gaps = 10/80 (12%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
              +F G+         ++ C+ C  C   CP Q I  +                    K
Sbjct: 174 YPNKFFGQRFSPPIYTHKQHCVLCGKCRIHCPVQCICKDDEGYPLFDN----------EK 223

Query: 103 CIYCGLCQEACPVDAIVEGP 122
           CI+C  C   CP  A+    
Sbjct: 224 CIHCYRCIHHCPKKALSLTK 243



 Score = 35.1 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 29/87 (33%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P  +  +    R +  +    +   R     +   I   +  +I + P    G R +   
Sbjct: 128 PAMRIWSRHEKRLDKKVENDVSVFIRRCNDPVVADIPRFKIYSILNYPNKFFGQRFSPPI 187

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPN 123
                 C+ CG C+  CPV  I +   
Sbjct: 188 YTHKQHCVLCGKCRIHCPVQCICKDDE 214


>gi|300712349|ref|YP_003738163.1| methyl-viologen-reducing hydrogenase delta subunit [Halalkalicoccus
           jeotgali B3]
 gi|299126032|gb|ADJ16371.1| methyl-viologen-reducing hydrogenase delta subunit [Halalkalicoccus
           jeotgali B3]
          Length = 712

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 13/71 (18%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C     C  +CP  AI      R   G       + +  KC+ CGLC+E CP  AI    
Sbjct: 575 CTLTPTCSNLCPTDAIR-----RTEWGL------EFNHEKCVNCGLCEEGCPESAITMRD 623

Query: 123 NFEFA--TETR 131
             + +   E R
Sbjct: 624 GLDLSLLPENR 634



 Score = 38.5 bits (88), Expect = 0.29,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 10/55 (18%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           C+ C   CP  A+             R    DID + C  CG C  ACP  A+  
Sbjct: 311 CRACYDACPHDAVAK----------PRPDEVDIDPVACQNCGACTSACPTGAVSL 355


>gi|257452975|ref|ZP_05618274.1| electron transport complex, RnfABCDGE type, B subunit
           [Fusobacterium sp. 3_1_5R]
          Length = 312

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 28/92 (30%), Gaps = 11/92 (11%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
                  P  K  T      +            CI C +C+  CP  AI + +       
Sbjct: 185 KSVIAMTPVAKKVTVKCMSKDKGGDAKKACGIACIGCGMCQRTCPFGAIEVSNNLA---- 240

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
                   ID  KC  C LC   CP  AI  G
Sbjct: 241 -------KIDPAKCKNCQLCVVVCPTKAIYTG 265



 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 59  GEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIK---CIYCGLCQEAC 113
            EE CI+C LC   CP    A+T  +         +    D        CI CG+CQ  C
Sbjct: 169 DEEACISCGLCVKACPKSVIAMTPVAKKVTVKCMSKDKGGDAKKACGIACIGCGMCQRTC 228

Query: 114 PVDAIVEGPN 123
           P  AI    N
Sbjct: 229 PFGAIEVSNN 238



 Score = 42.4 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 10/67 (14%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
             + +  C+    CE +CP  AI +                 +D   CI CGLC +ACP 
Sbjct: 136 DKSCKYGCLGYGDCERVCPVGAIVVNEKGIAS----------VDEEACISCGLCVKACPK 185

Query: 116 DAIVEGP 122
             I   P
Sbjct: 186 SVIAMTP 192


>gi|253579458|ref|ZP_04856728.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849556|gb|EES77516.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 284

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 15/69 (21%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L +Y   +++CI C  C   C      +E+                    CI CG C++A
Sbjct: 224 LYKYRVDKDKCIKCGKCAKACQMIVDPVENSNSPE---------------CIRCGRCKKA 268

Query: 113 CPVDAIVEG 121
           CP DAI  G
Sbjct: 269 CPTDAIQCG 277


>gi|224023700|ref|ZP_03642066.1| hypothetical protein BACCOPRO_00416 [Bacteroides coprophilus DSM
           18228]
 gi|224016922|gb|EEF74934.1| hypothetical protein BACCOPRO_00416 [Bacteroides coprophilus DSM
           18228]
          Length = 322

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 8/76 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------DMIKCIYCGLCQ 110
            E +C AC  C   CP   I I    + +                       CI CG C 
Sbjct: 169 DENKCTACGACSKACPRNIIEIRPKGKNNRRVVVMCVNKDKGAVANKACSASCIGCGKCV 228

Query: 111 EACPVDAIVEGPNFEF 126
           + CP +AI    N  +
Sbjct: 229 KVCPFEAITLENNLAY 244



 Score = 40.5 bits (93), Expect = 0.080,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 9/60 (15%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+ C  C + C   AI I                ++D  KC  CG C +ACP + I   P
Sbjct: 142 CLGCGDCVSACQFDAIHINPETGLP---------EVDENKCTACGACSKACPRNIIEIRP 192



 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 11/61 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI C  C  +CP +AIT+E+               ID  KC  C  C+  CP  AI
Sbjct: 217 CSASCIGCGKCVKVCPFEAITLENNLAY-----------IDPAKCKSCRKCEMECPKGAI 265

Query: 119 V 119
            
Sbjct: 266 H 266


>gi|222873278|gb|EEF10409.1| predicted protein [Populus trichocarpa]
          Length = 238

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 24/81 (29%), Gaps = 10/81 (12%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
             S     E         E  CI C LC   CP  AI   +             + +   
Sbjct: 71  PLSAEHGTEAPRTVAVIDEAWCIGCTLCIKACPTDAILGANK----------FMHTVIAA 120

Query: 102 KCIYCGLCQEACPVDAIVEGP 122
            C  C LC   CPVD I    
Sbjct: 121 HCTGCELCIPVCPVDCIELHN 141


>gi|188587487|ref|YP_001919032.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179352174|gb|ACB86444.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 384

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 10/62 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               E C  C+ C  +CP  AI      +            I+   C+ CG C   C  +
Sbjct: 194 KWEPENCTLCERCVDVCPHDAIYRTEEDQIE----------INYEICVKCGRCARVCKEE 243

Query: 117 AI 118
           A+
Sbjct: 244 AL 245



 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 8/24 (33%), Positives = 9/24 (37%)

Query: 100 MIKCIYCGLCQEACPVDAIVEGPN 123
              C  C  C + CP DAI     
Sbjct: 197 PENCTLCERCVDVCPHDAIYRTEE 220


>gi|148378952|ref|YP_001253493.1| anaerobic sulfite reductase, subunit C [Clostridium botulinum A
           str. ATCC 3502]
 gi|153931720|ref|YP_001383335.1| anaerobic sulfite reductase, subunit C [Clostridium botulinum A
           str. ATCC 19397]
 gi|153936257|ref|YP_001386883.1| anaerobic sulfite reductase, subunit C [Clostridium botulinum A
           str. Hall]
 gi|148288436|emb|CAL82513.1| anaerobic sulfite reductase subunit c [Clostridium botulinum A str.
           ATCC 3502]
 gi|152927764|gb|ABS33264.1| anaerobic sulfite reductase, subunit C [Clostridium botulinum A
           str. ATCC 19397]
 gi|152932171|gb|ABS37670.1| anaerobic sulfite reductase, subunit C [Clostridium botulinum A
           str. Hall]
          Length = 321

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 23/88 (26%), Gaps = 8/88 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +         G   +      + RC+ C+ C   C  +A                  
Sbjct: 145 CPNDCIKARMHDFGILGMTEPQYDKYRCVGCQACVNNCKKRATGALRFENFKVIRDH--- 201

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                 KCI CG C   CP  A      
Sbjct: 202 -----EKCIGCGECIGKCPTGAWTRSKE 224


>gi|77919233|ref|YP_357048.1| NADP-reducing hydrogenase subunit C [Pelobacter carbinolicus DSM
           2380]
 gi|77919440|ref|YP_357255.1| NADP-reducing hydrogenase subunit C [Pelobacter carbinolicus DSM
           2380]
 gi|77545316|gb|ABA88878.1| NADH dehydrogenase subunit F [Pelobacter carbinolicus DSM 2380]
 gi|77545523|gb|ABA89085.1| NADH dehydrogenase subunit F [Pelobacter carbinolicus DSM 2380]
          Length = 486

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 10/67 (14%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            L  Y   +++C+ C LC  +CP   I+ +              + ID   CI CG C +
Sbjct: 427 ELLEYTVVDQKCVGCTLCAKVCPVNCISGKPKE----------VHVIDQAACIKCGACLD 476

Query: 112 ACPVDAI 118
            C  DAI
Sbjct: 477 KCKFDAI 483



 Score = 38.5 bits (88), Expect = 0.30,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 17/44 (38%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            +             + Y +   KC+ C LC + CPV+ I   P
Sbjct: 414 HVIDKKCPAGVCAELLEYTVVDQKCVGCTLCAKVCPVNCISGKP 457


>gi|89901572|ref|YP_524043.1| 4Fe-4S ferredoxin [Rhodoferax ferrireducens T118]
 gi|89346309|gb|ABD70512.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodoferax ferrireducens
           T118]
          Length = 608

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 27/98 (27%), Gaps = 20/98 (20%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID----- 99
              R  +   +     + CI C  C  ICP   IT  S     D   R            
Sbjct: 488 EASRCLNCDVQTVFNRDTCIECDACVDICPMDCITFTSNGEEADLRTRLKAPAHHTAQDL 547

Query: 100 ---------------MIKCIYCGLCQEACPVDAIVEGP 122
                             C++CGLC E CP  A     
Sbjct: 548 YVSSELKTGRVMVKDEDVCLHCGLCAERCPTGAWDMQK 585



 Score = 37.4 bits (85), Expect = 0.72,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 18/60 (30%), Gaps = 2/60 (3%)

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
            E      A T                ++     CI C  C + CP+D I    N E A 
Sbjct: 474 VEVELGFDAATAFKEASRCLNCDVQTVFN--RDTCIECDACVDICPMDCITFTSNGEEAD 531


>gi|15644046|ref|NP_229095.1| iron-sulfur cluster-binding protein [Thermotoga maritima MSB8]
 gi|170289311|ref|YP_001739549.1| cobyrinic acid ac-diamide synthase [Thermotoga sp. RQ2]
 gi|4981849|gb|AAD36365.1|AE001784_7 iron-sulfur cluster-binding protein [Thermotoga maritima MSB8]
 gi|170176814|gb|ACB09866.1| Cobyrinic acid ac-diamide synthase [Thermotoga sp. RQ2]
          Length = 288

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 16/87 (18%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93
           I +P +       +RG+ A+      +E+C  C +CE +C   AI               
Sbjct: 43  ILFPGDPVEEHEYYRGKKAVI----DQEKCDRCGICERVCRFDAIIPGE----------- 87

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVE 120
            +Y +D   C  C  C  +CP +AI  
Sbjct: 88  -KYGVDQYACEGCNACVVSCPRNAITL 113



 Score = 38.5 bits (88), Expect = 0.28,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 19/42 (45%)

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
            P       R  +  ID  KC  CG+C+  C  DAI+ G  +
Sbjct: 48  DPVEEHEYYRGKKAVIDQEKCDRCGICERVCRFDAIIPGEKY 89


>gi|45359028|ref|NP_988585.1| hypothetical protein MMP1465 [Methanococcus maripaludis S2]
 gi|45047903|emb|CAF31021.1| conserved hypothetical protein [Methanococcus maripaludis S2]
          Length = 252

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 10/77 (12%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
             +  L ++   EE CI C +CE  CP  AIT+E          +    DI++  C+ C 
Sbjct: 119 HRKIRLVKHELDEESCIKCGICERFCPTSAITVE----------KRNSIDINLNLCMGCT 168

Query: 108 LCQEACPVDAIVEGPNF 124
            C++ CP  AI      
Sbjct: 169 ACEKVCPKSAIKVENEM 185



 Score = 41.2 bits (95), Expect = 0.051,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 30/83 (36%), Gaps = 11/83 (13%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P              A        + CI C +C  ICP  AI  E G            
Sbjct: 174 CPKSAIKVENEMGEITAENEISLNNDTCINCMVCSEICPVGAIVYEDG-----------L 222

Query: 96  YDIDMIKCIYCGLCQEACPVDAI 118
             +D   CI+CG C++ CPV AI
Sbjct: 223 MKLDDKMCIFCGKCEKNCPVTAI 245



 Score = 40.9 bits (94), Expect = 0.068,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 9/69 (13%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
              R       +CI C+LC  +CP  AI   S              +I   KC+ C +C 
Sbjct: 36  PVERNLYVESNKCIRCELCYEMCPVDAIKEPSVKSPA---------EILPEKCVKCEICA 86

Query: 111 EACPVDAIV 119
           + CPV AI 
Sbjct: 87  KTCPVGAIN 95



 Score = 38.2 bits (87), Expect = 0.39,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 15/74 (20%)

Query: 60  EERCIACKLCEAICPAQAI---------------TIESGPRCHDGTRRTVRYDIDMIKCI 104
            E+C+ C++C   CP  AI                            R V++++D   CI
Sbjct: 76  PEKCVKCEICAKTCPVGAINVLEGRAKLEEDNVVYELKEIDVTHRKIRLVKHELDEESCI 135

Query: 105 YCGLCQEACPVDAI 118
            CG+C+  CP  AI
Sbjct: 136 KCGICERFCPTSAI 149



 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 3/60 (5%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C+ C  CE +CP  AI +E+               ++   CI C +C E CPV AI
Sbjct: 160 NLNLCMGCTACEKVCPKSAIKVENEMGEITAENEIS---LNNDTCINCMVCSEICPVGAI 216


>gi|320353704|ref|YP_004195043.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Desulfobulbus propionicus DSM 2032]
 gi|320122206|gb|ADW17752.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Desulfobulbus propionicus DSM 2032]
          Length = 633

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 36/100 (36%), Gaps = 23/100 (23%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGE----HALRRYPNGEERCIACKLCEAICPAQAI 78
            LR+F         P E  +             AL +     E+C  C  C   CP +AI
Sbjct: 545 TLRHF---------PEEYEAHVRDKVCPAGQCKALLKPWINAEKCKGCGKCAKKCPVEAI 595

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + E              + ID  KCI CG C ++C   A+
Sbjct: 596 SGELKQP----------HVIDQDKCIKCGACLQSCKFGAV 625


>gi|317486042|ref|ZP_07944896.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
 gi|316922720|gb|EFV43952.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
          Length = 653

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 23/64 (35%), Gaps = 7/64 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +RC+ C  C  +CP QAI            R   +       C  CGLC   CP  AI
Sbjct: 581 DIKRCVGCGKCIKVCPFQAI-------VEKEIRGEKKAQTIEAVCQGCGLCTATCPQGAI 633

Query: 119 VEGP 122
               
Sbjct: 634 QLSH 637



 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 26/86 (30%), Gaps = 17/86 (19%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGP--------RCHDGTRRTVRYDIDMIKCIY--- 105
                +C  C  C   CPA+    +                     +  I+   C     
Sbjct: 236 YVDWSKCTGCGACMDKCPAKKTPDKFNEFVGPTTAINIPFPQAIPKKATINAEFCRKLTS 295

Query: 106 --CGLCQEACPVDAIVEGPNFEFATE 129
             CG+C + CP  AI    N+E   E
Sbjct: 296 GKCGVCAKVCPTGAI----NYEMKDE 317



 Score = 38.2 bits (87), Expect = 0.38,   Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 13/22 (59%)

Query: 102 KCIYCGLCQEACPVDAIVEGPN 123
           +C+ CG C + CP  AIVE   
Sbjct: 584 RCVGCGKCIKVCPFQAIVEKEI 605


>gi|229515401|ref|ZP_04404860.1| electron transport complex protein RnfC [Vibrio cholerae TMA 21]
 gi|229347170|gb|EEO12130.1| electron transport complex protein RnfC [Vibrio cholerae TMA 21]
          Length = 800

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 29/105 (27%), Gaps = 12/105 (11%)

Query: 13  LKEFVGA---FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69
           L   +         L +          P  K +        + L    N    CI C  C
Sbjct: 360 LPRLIMGGPMMGFTLPH-------AQVPITKTANCILAPTRNELTSSENEMA-CIRCGQC 411

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
              CP   +  +               ++++  CI CG C   CP
Sbjct: 412 AEACPVS-LLPQQLQWHAKAEEFDKCEELNLKDCIECGACAYVCP 455



 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 10/13 (76%), Positives = 10/13 (76%)

Query: 103 CIYCGLCQEACPV 115
           CI CG C EACPV
Sbjct: 405 CIRCGQCAEACPV 417


>gi|206901296|ref|YP_002251606.1| hypothetical protein DICTH_1795 [Dictyoglomus thermophilum H-6-12]
 gi|206740399|gb|ACI19457.1| conserved protein [Dictyoglomus thermophilum H-6-12]
          Length = 378

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 11/67 (16%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           +     +++CI C++CE  CP +AIT                  ID  KCI C  C E C
Sbjct: 312 QYPVIEDKKCIKCRICENSCPNKAITYTPEGMI-----------IDYKKCISCFCCHELC 360

Query: 114 PVDAIVE 120
           P  AI  
Sbjct: 361 PQKAIRL 367



 Score = 37.0 bits (84), Expect = 0.79,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           I+  KCI C +C+ +CP  AI   P        +
Sbjct: 316 IEDKKCIKCRICENSCPNKAITYTPEGMIIDYKK 349


>gi|156934160|ref|YP_001438076.1| electron transport complex protein RnfB [Cronobacter sakazakii ATCC
           BAA-894]
 gi|166225083|sp|A7MMM3|RNFB_ENTS8 RecName: Full=Electron transport complex protein rnfB
 gi|156532414|gb|ABU77240.1| hypothetical protein ESA_01987 [Cronobacter sakazakii ATCC BAA-894]
          Length = 192

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 22/75 (29%), Gaps = 10/75 (13%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
             E         E  CI C  C   CP  AI   +             + +    C  C 
Sbjct: 102 MAEPVRMLAVIDEPNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCN 151

Query: 108 LCQEACPVDAIVEGP 122
           LC + CP   I   P
Sbjct: 152 LCVDPCPTQCIELRP 166


>gi|118576826|ref|YP_876569.1| hypothetical protein CENSYa_1647 [Cenarchaeum symbiosum A]
 gi|118195347|gb|ABK78265.1| hypothetical protein CENSYa_1647 [Cenarchaeum symbiosum A]
          Length = 100

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 1/69 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+RCI C LC  IC      +        G +R   +     +CI  G C   CP  AI
Sbjct: 10  DEQRCIGCALCVEICTTLGPDVLRVKPVE-GWKRGKAFVFYPERCITDGACIGVCPTKAI 68

Query: 119 VEGPNFEFA 127
                  + 
Sbjct: 69  FWMRPMNYT 77


>gi|57641914|ref|YP_184392.1| 2-ketoisovalerate ferredoxin oxidoreductase subunit delta
           [Thermococcus kodakarensis KOD1]
 gi|57160238|dbj|BAD86168.1| 2-oxoisovalerate:ferredoxin oxidoreductase, delta subunit
           [Thermococcus kodakarensis KOD1]
          Length = 105

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 10/65 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E++C+ C +C   CP  AI I+                ID   C  CG+C   CP  AI
Sbjct: 49  NEDKCVKCYICWKFCPEPAIYIKPDGYVA----------IDYDYCKGCGICANECPTKAI 98

Query: 119 VEGPN 123
                
Sbjct: 99  TMEKE 103


>gi|319764278|ref|YP_004128215.1| methyl-viologen-reducing hydrogenase delta subunit [Alicycliphilus
           denitrificans BC]
 gi|317118839|gb|ADV01328.1| methyl-viologen-reducing hydrogenase delta subunit [Alicycliphilus
           denitrificans BC]
          Length = 527

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 26/75 (34%), Gaps = 7/75 (9%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
                   R   A+       E C  C  C   CP  AIT+ + P    G R      + 
Sbjct: 296 PPFLPTATRQAVAVVY----PEHCSGCARCFDDCPYSAITMVAHPNGKPGMRLA---QVR 348

Query: 100 MIKCIYCGLCQEACP 114
              C  CG+C  +CP
Sbjct: 349 ADLCASCGICAGSCP 363


>gi|288869823|ref|ZP_06111962.2| protein HymB [Clostridium hathewayi DSM 13479]
 gi|288869448|gb|EFD01747.1| protein HymB [Clostridium hathewayi DSM 13479]
          Length = 573

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 28/69 (40%), Gaps = 10/69 (14%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            AL  +    E+C  C LC   CPA AIT                + ID  KC+ CG C 
Sbjct: 513 KALLNFYIDPEKCKGCTLCARNCPANAITGT----------VKNPHVIDGEKCLKCGACM 562

Query: 111 EACPVDAIV 119
           E C   AI 
Sbjct: 563 EKCKFGAIY 571



 Score = 37.0 bits (84), Expect = 0.98,   Method: Composition-based stats.
 Identities = 12/51 (23%), Positives = 16/51 (31%)

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
                    I          +  + + ID  KC  C LC   CP +AI   
Sbjct: 493 YFRDEYVAHIVDKTCPAGVCKALLNFYIDPEKCKGCTLCARNCPANAITGT 543


>gi|326204194|ref|ZP_08194054.1| Glutamate synthase (NADPH) [Clostridium papyrosolvens DSM 2782]
 gi|325985705|gb|EGD46541.1| Glutamate synthase (NADPH) [Clostridium papyrosolvens DSM 2782]
          Length = 501

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 9/66 (13%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               ++CI CK+C   C  +  + +                 D  KC+ C  C   CP  
Sbjct: 13  CRDPKKCIKCKVCMRQCANEVHSYDEE---------LDMMVADDSKCVDCQRCVSLCPTR 63

Query: 117 AIVEGP 122
           A+    
Sbjct: 64  ALRITK 69


>gi|257783995|ref|YP_003179212.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Atopobium parvulum DSM 20469]
 gi|257472502|gb|ACV50621.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Atopobium
           parvulum DSM 20469]
          Length = 461

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 29/86 (33%), Gaps = 13/86 (15%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
              L+       +C  C  C+  C   AI I+   +            I M  C+ CG C
Sbjct: 315 YVKLKAPIWDSSKCTVCGDCKNTCTTHAIDIDERGKL----------TIKMPFCVNCGAC 364

Query: 110 QEACPVD-AIVEGPNF--EFATETRQ 132
           +  CP   A+   P    E     R+
Sbjct: 365 EIVCPEPGALTMVPMNTSELVVRDRK 390



 Score = 41.2 bits (95), Expect = 0.053,   Method: Composition-based stats.
 Identities = 13/72 (18%), Positives = 18/72 (25%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103
               +    +            C  C +  P            +          ID   C
Sbjct: 40  PNTDKPFEPMDYKEIPWSNANRCLRCASGKPEACSRCLDVCPANCIDIHNQSVRIDDEAC 99

Query: 104 IYCGLCQEACPV 115
           + CGLC  ACP 
Sbjct: 100 LQCGLCVAACPT 111


>gi|261339613|ref|ZP_05967471.1| electron transport complex, RnfABCDGE type, B subunit [Enterobacter
           cancerogenus ATCC 35316]
 gi|288318435|gb|EFC57373.1| electron transport complex, RnfABCDGE type, B subunit [Enterobacter
           cancerogenus ATCC 35316]
          Length = 192

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 23/72 (31%), Gaps = 11/72 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   +             + +    C  C LC   CP   I
Sbjct: 113 DEANCIGCTKCIQACPVDAIVGAT----------RAMHTVVADLCTGCNLCVAPCPTQCI 162

Query: 119 VEGPNFEFATET 130
              P  E  TE 
Sbjct: 163 ELRPV-ETTTEN 173



 Score = 35.8 bits (81), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C  C +ACPVDAI
Sbjct: 112 IDEANCIGCTKCIQACPVDAI 132


>gi|225850085|ref|YP_002730319.1| pyruvate synthase subunit PorD (Pyruvate oxidoreductasedelta chain)
           (POR) (Pyruvic-ferredoxin oxidoreductase subunit delta)
           [Persephonella marina EX-H1]
 gi|225645603|gb|ACO03789.1| pyruvate synthase subunit PorD (Pyruvate oxidoreductasedelta chain)
           (POR) (Pyruvic-ferredoxin oxidoreductase subunit delta)
           [Persephonella marina EX-H1]
          Length = 105

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 10/96 (10%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E GS+     G   + R     ++C  C +C   CP  +I +    R          ++ 
Sbjct: 19  EAGSSKINHTGSWRMLRPVLHTDKCTHCLICWIFCPDDSIPVTPQER----------FET 68

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134
           D   C  CG+C   CP DA+   P  E   +  +EL
Sbjct: 69  DFEYCKGCGICATECPYDALEMVPEMEIKLKELEEL 104


>gi|254468272|ref|ZP_05081678.1| electron transport complex protein [beta proteobacterium KB13]
 gi|207087082|gb|EDZ64365.1| electron transport complex protein [beta proteobacterium KB13]
          Length = 183

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 26/90 (28%), Gaps = 10/90 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E    +               E  CI C LC   CP  AI   +             + I
Sbjct: 89  EYKPLNAEHGETKPKSIAIIDESTCIGCTLCIQACPVDAIIGAAKQ----------MHTI 138

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
              +C  C LC   CPVD I      E   
Sbjct: 139 VEKECTGCELCLPPCPVDCIDMVEIPETTD 168


>gi|168187953|ref|ZP_02622588.1| conserved domain protein [Clostridium botulinum C str. Eklund]
 gi|169294213|gb|EDS76346.1| conserved domain protein [Clostridium botulinum C str. Eklund]
          Length = 57

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 11/58 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C++C  C + CP  AI+               ++DID   CI CG C   CPV AI
Sbjct: 7   DSCVSCGSCASECPVGAISQGD-----------SQFDIDASACIDCGNCANVCPVGAI 53


>gi|168184969|ref|ZP_02619633.1| iron-sulfur cluster-binding protein [Clostridium botulinum Bf]
 gi|237793330|ref|YP_002860882.1| iron-sulfur cluster-binding protein [Clostridium botulinum Ba4 str.
           657]
 gi|182671973|gb|EDT83934.1| iron-sulfur cluster-binding protein [Clostridium botulinum Bf]
 gi|229262235|gb|ACQ53268.1| iron-sulfur cluster-binding protein [Clostridium botulinum Ba4 str.
           657]
          Length = 387

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           E+CI C  C  +CP +   I+   +             +M KCI C  CQE CP  AI
Sbjct: 319 EKCIGCNRCAEVCPEKPYVIDMIKKEGKKIPVW-----NMKKCIRCFCCQELCPKGAI 371


>gi|171186294|ref|YP_001795213.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoproteus neutrophilus V24Sta]
 gi|170935506|gb|ACB40767.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermoproteus
           neutrophilus V24Sta]
          Length = 368

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 10/62 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            + +CI C +C   CPA A                    +   +C+ CGLC   CPV+A+
Sbjct: 80  DQAKCIWCGMCAKSCPATAFEYVERRSI----------RVMYDRCVDCGLCNALCPVEAV 129

Query: 119 VE 120
             
Sbjct: 130 KM 131



 Score = 38.5 bits (88), Expect = 0.30,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 35/107 (32%), Gaps = 26/107 (24%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEER--------CIACKLCEAICPAQAITIESGPRCHDGT 90
           EK    P  R +  +     G           C  C  C  +CP  A++I          
Sbjct: 224 EKAPLQPGDRWQTRMLAAALGMPVGRVEVAEGCTLCGACVNVCPTDALSI---------- 273

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
            +     +    CI CG+C E CP   +          E R++  Y+
Sbjct: 274 -KGFELRLTPALCIACGVCAEKCPERVVR-------VAEAREDKPYE 312


>gi|145299426|ref|YP_001142267.1| electron transport complex protein RnfC [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142852198|gb|ABO90519.1| electron transport complex protein RnfC [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 753

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 10/74 (13%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACPVD 116
           + CI C  C   CPA  +     P+      R   YD    +++  CI CG C   CP  
Sbjct: 375 QACIRCSACADACPANLL-----PQELYWYSRAKEYDKAEGLNLFDCIECGACAWVCP-S 428

Query: 117 AIVEGPNFEFATET 130
            I     ++ A + 
Sbjct: 429 EIPLVQYYKIAKDD 442


>gi|117618643|ref|YP_857145.1| electron transport complex, RnfABCDGE type, C subunit [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117560050|gb|ABK36998.1| electron transport complex, RnfABCDGE type, C subunit [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 851

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 10/74 (13%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACPVD 116
           + CI C  C   CPA  +     P+      R   YD    +++  CI CG C   CP  
Sbjct: 375 QACIRCSACADACPANLL-----PQELYWYSRAKEYDKAEGLNLFDCIECGACAWVCP-S 428

Query: 117 AIVEGPNFEFATET 130
            I     ++ A + 
Sbjct: 429 EIPLVQYYKIAKDD 442


>gi|16182390|gb|AAL13488.1| GH01650p [Drosophila melanogaster]
          Length = 864

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 18/65 (27%), Gaps = 8/65 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP-VDA 117
            ++ CI C  C   C                  +          C  C LC   CP +D 
Sbjct: 782 DDDMCINCGKCYMTCA-------DSGYQAIEFDKDTHIPHVNDDCTGCTLCVSVCPIIDC 834

Query: 118 IVEGP 122
           I   P
Sbjct: 835 ITMVP 839


>gi|84488956|ref|YP_447188.1| HdrA2 [Methanosphaera stadtmanae DSM 3091]
 gi|84372275|gb|ABC56545.1| HdrA2 [Methanosphaera stadtmanae DSM 3091]
          Length = 771

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 7/67 (10%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGP-------RCHDGTRRTVRYDIDMIKCIYCGLC 109
               ++C +C  C + CP       +                    Y +D   CI CG+C
Sbjct: 242 YVDTQKCTSCGRCTSACPTVVPDEWNEGLINRKAIYKPFPQAVPSTYTLDDEHCIKCGIC 301

Query: 110 QEACPVD 116
              CP +
Sbjct: 302 TNVCPTN 308



 Score = 38.9 bits (89), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 11/60 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++C+ C  C   C  QAIT+                 +D I C  CG C   CP +AI
Sbjct: 578 NVKKCVLCGSCVENCVYQAITLNRN-----------SIHVDAISCTGCGDCIITCPQEAI 626


>gi|56695736|ref|YP_166087.1| formate dehydrogenase, alpha subunit [Ruegeria pomeroyi DSS-3]
 gi|56677473|gb|AAV94139.1| formate dehydrogenase, alpha subunit [Ruegeria pomeroyi DSS-3]
          Length = 925

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114
             + CI C LC   C  +    +       G    V +D    +    C+ CG C +ACP
Sbjct: 150 NLDACINCNLCVRACR-EVQVNDVIGMAGRGAGAQVVFDQNDPMGASTCVACGECVQACP 208

Query: 115 VDAIV 119
             A++
Sbjct: 209 TGALM 213


>gi|15899473|ref|NP_344078.1| pyruvate synthase delta chain (Pyruvic-ferredoxin oxidoreductase
           delta chain) (porD-2) [Sulfolobus solfataricus P2]
 gi|284174280|ref|ZP_06388249.1| pyruvate synthase delta chain (Pyruvic-ferredoxin oxidoreductase
           delta chain) (porD-2) [Sulfolobus solfataricus 98/2]
 gi|13816089|gb|AAK42868.1| Pyruvate synthase delta chain (Pyruvic-ferredoxin oxidoreductase
           delta chain) (porD-2) [Sulfolobus solfataricus P2]
          Length = 94

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 26/75 (34%), Gaps = 11/75 (14%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G   + +      +CI CK C   CP   I   +G              +D   C  CG+
Sbjct: 30  GAWRIVKPVVDYSKCIGCKACFMFCPESTIVPSNGKV-----------RVDYEYCKGCGV 78

Query: 109 CQEACPVDAIVEGPN 123
           C   CPV AI     
Sbjct: 79  CANVCPVKAISMVSE 93


>gi|89097591|ref|ZP_01170480.1| dihydropyrimidine dehydrogenase [Bacillus sp. NRRL B-14911]
 gi|89087887|gb|EAR66999.1| dihydropyrimidine dehydrogenase [Bacillus sp. NRRL B-14911]
          Length = 429

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 19/63 (30%), Gaps = 4/63 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117
             + CI C  C   C   +          +G             C+ C LC   CP + A
Sbjct: 338 DPDICINCNKCHIACEDTSHQCIDMLVDENGKEYLKV---REEDCVGCNLCSIVCPEEGA 394

Query: 118 IVE 120
           I  
Sbjct: 395 ISM 397


>gi|118579914|ref|YP_901164.1| hydrogenases, Fe-only [Pelobacter propionicus DSM 2379]
 gi|118502624|gb|ABK99106.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
           [Pelobacter propionicus DSM 2379]
          Length = 601

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 5/71 (7%)

Query: 59  GEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
              +C+ C  C  +C       AI                +  I  ++C+ CG C   CP
Sbjct: 146 DPNKCVLCGDCARMCSEIQGIGAIDFAHRGHDAAVLPAFGK-KIGEVECVNCGQCTIVCP 204

Query: 115 VDAIVEGPNFE 125
             ++   P  E
Sbjct: 205 TGSLCLKPEME 215


>gi|332298288|ref|YP_004440210.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Treponema brennaborense DSM 12168]
 gi|332181391|gb|AEE17079.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Treponema brennaborense DSM 12168]
          Length = 411

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 6/62 (9%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +      +  C  CK+C ++C   AI+ ES               ID  KCI CG C++ 
Sbjct: 1   MFLDDGVKSGCCGCKVCASVCKTNAISFESDEEGFWYP------IIDGNKCIDCGQCRKV 54

Query: 113 CP 114
           CP
Sbjct: 55  CP 56


>gi|307354648|ref|YP_003895699.1| nitroreductase [Methanoplanus petrolearius DSM 11571]
 gi|307157881|gb|ADN37261.1| nitroreductase [Methanoplanus petrolearius DSM 11571]
          Length = 272

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 10/82 (12%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +      EE C  C +C   CP   ++                      KCI CG C+  
Sbjct: 1   METITVDEELCTRCGICSEACPTGIVSPAGENTLPGVPGEMS------EKCIRCGHCEAF 54

Query: 113 CPVDAIVEGPNFEFATETRQEL 134
           CP  A++      F+ E +++L
Sbjct: 55  CPTGALIL----NFSPEEKEDL 72


>gi|260892888|ref|YP_003238985.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ammonifex
           degensii KC4]
 gi|260865029|gb|ACX52135.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ammonifex
           degensii KC4]
          Length = 656

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 33/111 (29%), Gaps = 14/111 (12%)

Query: 24  LRYFFKA----KTTINYPFEKGSTSPRFRGEHALRRYPNG---EERCIACKLCEAICPAQ 76
           L+   K          YP         F G   ++        +E+C  C  CE +CP +
Sbjct: 199 LKQLLKKVAQHPKIRLYPATTLEEVEGFVGNWKVKVKQRPLLVDEKCDRCGRCEEVCPVE 258

Query: 77  AITIE-------SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
                                    RY +D+  C  CG C + CP   I  
Sbjct: 259 VPDSFNYGLSLRKAIYFPHPDAFPSRYAVDLDHCTKCGECVKVCPRGLINL 309



 Score = 38.5 bits (88), Expect = 0.27,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 13/73 (17%)

Query: 48  RGEHALRRYPNGEER--CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           RG   L  +        C  C +C   C   A+ ++ G             +++   C  
Sbjct: 572 RGHVELEPFVAEVYPERCNGCGICLEECSYGALKLKDGKV-----------EVNEAVCQG 620

Query: 106 CGLCQEACPVDAI 118
           CG C   CP  A+
Sbjct: 621 CGACAAMCPQMAL 633


>gi|294934924|ref|XP_002781266.1| hypothetical protein Pmar_PMAR027580 [Perkinsus marinus ATCC 50983]
 gi|239891687|gb|EER13061.1| hypothetical protein Pmar_PMAR027580 [Perkinsus marinus ATCC 50983]
          Length = 387

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/120 (23%), Positives = 38/120 (31%), Gaps = 30/120 (25%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAI---------------TIESGPRCHDGTRRTVR 95
            AL       ++C  C +C   CP   I               T +S           + 
Sbjct: 94  VALMIPIVDMDKCTQCNICSMSCPHACIRPFLLSQAEDDAKPSTFDSRKAKGGAEVAGLH 153

Query: 96  YDID--MIKCIYCGLCQEACPVDAIVE----------GPNFEFATE--TRQELYYDKERL 141
           Y I    + C  C  C  ACP DA+             PN+E+A     R    +DK  L
Sbjct: 154 YRIQVSPLDCTGCETCVNACPYDALRMEHLADFEDIEKPNWEYAVSLPDRSSR-FDKTTL 212


>gi|168181125|ref|ZP_02615789.1| iron-sulfur cluster-binding protein [Clostridium botulinum NCTC
           2916]
 gi|182668040|gb|EDT80019.1| iron-sulfur cluster-binding protein [Clostridium botulinum NCTC
           2916]
          Length = 387

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           E+CI C  C  +CP +   I+   +             +M KCI C  CQE CP  AI
Sbjct: 319 EKCIGCNRCAEVCPEKPYVIDMIKKEGKKIPVW-----NMKKCIRCFCCQELCPKGAI 371


>gi|116235052|dbj|BAF34975.1| trichloroethene reductive dehalogenase [uncultured Dehalococcoides
           sp.]
 gi|116235054|dbj|BAF34976.1| trichloroethene reductive dehalogenase [uncultured Dehalococcoides
           sp.]
          Length = 554

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 3/60 (5%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID---MIKCIYCGLCQEACPVD 116
            E C  C +C   CP QAI+ E              Y+       KCI C  C+  CP  
Sbjct: 434 REFCKTCGICAEHCPNQAISHEGPRYDSPYWDNVSGYEGWHLDHHKCINCTNCETFCPFF 493


>gi|20091692|ref|NP_617767.1| heterodisulfide reductase, subunit A/methylviologen reducing
           hydrogenase, subunit delta [Methanosarcina acetivorans
           C2A]
 gi|41017214|sp|Q8TM02|HDRA_METAC RecName: Full=CoB--CoM heterodisulfide reductase 1 iron-sulfur
           subunit A
 gi|19916866|gb|AAM06247.1| heterodisulfide reductase, subunit A/methylviologen reducing
           hydrogenase, subunit delta [Methanosarcina acetivorans
           C2A]
          Length = 793

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 12/69 (17%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               ++CI C+ C  +C    I+IE+               +D + C  CG C  ACPV 
Sbjct: 574 HVDPDKCIGCRTCVEVCKFGKISIENKKAV-----------VDEVSCYGCGDCSAACPVG 622

Query: 117 AIVEGPNFE 125
           AI    NFE
Sbjct: 623 AIQM-RNFE 630



 Score = 41.6 bits (96), Expect = 0.041,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 30/101 (29%), Gaps = 11/101 (10%)

Query: 29  KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88
               T+    E    S      H   +          CK C  +C          P  + 
Sbjct: 206 HPNITLYTYSEVTDISGSVGKFHVRVKRKPRFVLEDKCKGCVDLCSGVCPVEIENPMNYG 265

Query: 89  GTRRTVRYD-----------IDMIKCIYCGLCQEACPVDAI 118
             +    Y            ID   C+ CGLCQ ACP +A+
Sbjct: 266 IGKTRAIYMPIPQSVPQVVLIDPDHCVGCGLCQLACPAEAV 306


>gi|325119973|emb|CBZ55526.1| RNase L inhibitor, related [Neospora caninum Liverpool]
          Length = 613

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            LR      +RC   K C   C      + +G  C +    +    I    CI CG+C +
Sbjct: 16  RLRIAIVNGDRCKP-KKCRQECKRNCPVVRTGKLCIEADATSKIAFISEPLCIGCGICVK 74

Query: 112 ACPVDAI 118
            CP +AI
Sbjct: 75  KCPFEAI 81


>gi|190347874|gb|EDK40226.2| hypothetical protein PGUG_04324 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 607

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 25/56 (44%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           K C+  C      +++G  C + T  +    I    CI CG+C + CP DAI    
Sbjct: 19  KKCKQECRKSCPVVKTGKLCIEVTPASKIAFISETLCIGCGICVKKCPFDAINIIN 74


>gi|164687260|ref|ZP_02211288.1| hypothetical protein CLOBAR_00901 [Clostridium bartlettii DSM
           16795]
 gi|164603684|gb|EDQ97149.1| hypothetical protein CLOBAR_00901 [Clostridium bartlettii DSM
           16795]
          Length = 584

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 10/66 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L  Y   E++C  C  C+  CP  AI+                + ID   CI CG C E 
Sbjct: 526 LISYDIVEDKCKGCGACKKKCPVSAISGNKKEA----------HVIDKNICIKCGKCMET 575

Query: 113 CPVDAI 118
           C  +AI
Sbjct: 576 CKFNAI 581



 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 8/69 (11%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           +         I +        +  + YDI   KC  CG C++ CPV AI        +  
Sbjct: 503 KYFRHEYEDHIYNKKCTAKACKSLISYDIVEDKCKGCGACKKKCPVSAI--------SGN 554

Query: 130 TRQELYYDK 138
            ++    DK
Sbjct: 555 KKEAHVIDK 563


>gi|144897651|emb|CAM74515.1| formate dehydrogenase, alpha subunit [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 928

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     +G       R     D    +C+ CG C +
Sbjct: 158 YFQYDPAKCIVCSRCVRACAEVQGTFALNVAGRGFDSRIRPGAAPDFMGSECVSCGACVQ 217

Query: 112 ACPVDAIVE 120
           ACP   ++E
Sbjct: 218 ACPTATLIE 226


>gi|189423121|ref|YP_001950298.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
           lovleyi SZ]
 gi|189419380|gb|ACD93778.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
           lovleyi SZ]
          Length = 367

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 27/85 (31%), Gaps = 17/85 (20%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             C AC LC   C   AI I  G              ID IKC  C  C   CP  A+  
Sbjct: 192 RHCTACGLCIKACAHDAIRIVDGVAV-----------IDAIKCAGCSRCITVCPTKAVAI 240

Query: 121 GPNFEFATETRQELYYDKERLLNNG 145
             N         +L   K     +G
Sbjct: 241 QWNEA------ADLVMKKMAEYASG 259


>gi|332982271|ref|YP_004463712.1| glutamate synthase (NADPH) GltB2 subunit [Mahella australiensis
           50-1 BON]
 gi|332699949|gb|AEE96890.1| glutamate synthase (NADPH) GltB2 subunit [Mahella australiensis
           50-1 BON]
          Length = 500

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 9/65 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E RCI C++C   C  +   ++          +  +   D  KC+ C  C   CP  A+
Sbjct: 14  DENRCIQCQVCVRQCANEVHYLDE---------KDGKVKADDAKCVDCQRCVTFCPTHAL 64

Query: 119 VEGPN 123
              PN
Sbjct: 65  TIIPN 69


>gi|332799823|ref|YP_004461322.1| RnfABCDGE type electron transport complex subunit C
           [Tepidanaerobacter sp. Re1]
 gi|332697558|gb|AEE92015.1| electron transport complex, RnfABCDGE type, C subunit
           [Tepidanaerobacter sp. Re1]
          Length = 440

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 20/70 (28%), Gaps = 2/70 (2%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI C  C   CP   +          G       +   + CI CG C   CP   I
Sbjct: 362 EPSPCIRCARCVDACPINLLPTNLAKFTERGMWAEAE-NYHALDCIECGCCSYVCPAH-I 419

Query: 119 VEGPNFEFAT 128
               +   A 
Sbjct: 420 PLTQHIRVAK 429


>gi|307298643|ref|ZP_07578446.1| electron transport complex, RnfABCDGE type, C subunit
           [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915808|gb|EFN46192.1| electron transport complex, RnfABCDGE type, C subunit
           [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 439

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 2/72 (2%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           ++  P  E  CI C  C  +CP                    + +  ++ CI CG C   
Sbjct: 354 MKSDPLEEFPCIRCGKCATVCPMNLQPFLLNL-YGTNRLYDKQVENGLLDCIECGSCSYV 412

Query: 113 CPVDAIVEGPNF 124
           CP + I    NF
Sbjct: 413 CPAN-IELVKNF 423


>gi|306819983|ref|ZP_07453634.1| 4Fe-4S ferredoxin [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304552019|gb|EFM39959.1| 4Fe-4S ferredoxin [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 277

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/112 (23%), Positives = 36/112 (32%), Gaps = 16/112 (14%)

Query: 27  FFKAKTTINYPFEKGSTSPRFRGEHALRRY--PNGEERCIACKLCEAICPAQAITIESGP 84
           F +     N P           G H   R   P   ++C  CKLC  +CP  AI      
Sbjct: 168 FSRPTVKGNNPVHPYFQPQDRNGNHIDIRKVKPKTNDKCTDCKLCAILCPTGAIDYNDVK 227

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN-FEFATETRQELY 135
                             C+ C  C + CPV+A       + +     +ELY
Sbjct: 228 SV-------------PGVCMKCCACVKKCPVNAKYFDDEGYLYHQRELEELY 266


>gi|302343604|ref|YP_003808133.1| Cobyrinic acid ac-diamide synthase [Desulfarculus baarsii DSM 2075]
 gi|301640217|gb|ADK85539.1| Cobyrinic acid ac-diamide synthase [Desulfarculus baarsii DSM 2075]
          Length = 291

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 30/88 (34%), Gaps = 17/88 (19%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C  C LC  +C   A  ++ G              ID   C  C LC   CP  AI   
Sbjct: 67  DCTGCGLCAELCAFGAARLDEGGLAV----------IDESACEGCKLCVAMCPAQAIDFP 116

Query: 122 P----NFEFATETRQELYYDKERLLNNG 145
           P    N+  +      + +    LL+ G
Sbjct: 117 PRDCGNWHLSDTRLGPMVH---ALLHPG 141


>gi|294643271|ref|ZP_06721097.1| 4Fe-4S binding domain protein [Bacteroides ovatus SD CC 2a]
 gi|294806465|ref|ZP_06765306.1| 4Fe-4S binding domain protein [Bacteroides xylanisolvens SD CC 1b]
 gi|292641394|gb|EFF59586.1| 4Fe-4S binding domain protein [Bacteroides ovatus SD CC 2a]
 gi|294446328|gb|EFG14954.1| 4Fe-4S binding domain protein [Bacteroides xylanisolvens SD CC 1b]
          Length = 402

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 6/62 (9%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           + +       C  C  C  +C   AI          G R  V    ++  CI CGLCQ+ 
Sbjct: 1   MMKEICQHNECTGCSACVNVCGKNAIFYCEDK---IGFRYPVV---NLDLCIDCGLCQKV 54

Query: 113 CP 114
           CP
Sbjct: 55  CP 56


>gi|289522475|ref|ZP_06439329.1| dihydroorotate dehydrogenase(DHOdehase) [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289504311|gb|EFD25475.1| dihydroorotate dehydrogenase(DHOdehase) [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 363

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 27/74 (36%), Gaps = 10/74 (13%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           +           EE+CI C+ CE  C   AI + S  +            +    C  CG
Sbjct: 300 KEPLVKVTPSVNEEKCIGCRRCEESCVYYAINVGSSGKAG----------VTTDACFGCG 349

Query: 108 LCQEACPVDAIVEG 121
           LC   CPV AI   
Sbjct: 350 LCYTRCPVGAITLS 363


>gi|268324146|emb|CBH37734.1| conserved hypothetical protein containing CobQ/CobB/MinD/ParA
           nucleotide binding domain, and 4Fe-4S binding domains
           [uncultured archaeon]
          Length = 284

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 26/81 (32%), Gaps = 11/81 (13%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
                 +  + L    N  + C  C  C A C   A+ +                 +   
Sbjct: 53  PVIEEIKPAYTLVPRVN-YDLCDYCGKCAAACEYNALVVVPQKEV----------MVFPE 101

Query: 102 KCIYCGLCQEACPVDAIVEGP 122
            C  CGLC   CP DAI E P
Sbjct: 102 LCHGCGLCSLICPQDAISEEP 122


>gi|260913865|ref|ZP_05920339.1| electron transport complex [Pasteurella dagmatis ATCC 43325]
 gi|260631952|gb|EEX50129.1| electron transport complex [Pasteurella dagmatis ATCC 43325]
          Length = 753

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 33/103 (32%), Gaps = 3/103 (2%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C   CP   +  +               +  +  CI CGLC   CP   I  
Sbjct: 375 QSCIRCSACSDACPVN-LMPQQLYWFARSEDHEKSEEYALHDCIECGLCAYVCPSH-IPL 432

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
              F        ++    ++      R+E+   R +  +   R
Sbjct: 433 IQYFRQEKAKIWDIKEKAKQAEEAKQRFEARQAR-LEKEEQER 474


>gi|238753581|ref|ZP_04614943.1| Pyruvate-flavodoxin oxidoreductase [Yersinia ruckeri ATCC 29473]
 gi|238708133|gb|EEQ00489.1| Pyruvate-flavodoxin oxidoreductase [Yersinia ruckeri ATCC 29473]
          Length = 1176

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 38/165 (23%), Gaps = 39/165 (23%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A        + C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSAFPPDGTWPLGTTQWEKRNIAENIPIWQPDLCTQCNHCVAAC 699

Query: 74  PAQAITIESGPRCHD----------------GTRRTVRYDIDMIKCIYCGLCQEACPV-- 115
           P  AI  +  P                       +     +    C  C LC E CP   
Sbjct: 700 PHSAIRAKVVPPSAMTDAPASLHALDVKARDMRGQKYVLQVAPEDCTGCNLCYEVCPAKD 759

Query: 116 ------DAIVEGPNFEFATETRQELYY-------DKERLLNNGDR 147
                  AI   P      E +    +       DK +L     R
Sbjct: 760 RQNPAIKAINMQPRLAHLVEEKAHYNFFLQLPEIDKTQLERIDIR 804


>gi|229815904|ref|ZP_04446228.1| hypothetical protein COLINT_02960 [Collinsella intestinalis DSM
           13280]
 gi|229808599|gb|EEP44377.1| hypothetical protein COLINT_02960 [Collinsella intestinalis DSM
           13280]
          Length = 421

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 10/72 (13%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
               ++      +RC  C  C   CP  A  + +G +            I+   CI CGL
Sbjct: 308 ENVRVQFPEFDHDRCTMCGACVEACPTFACDLLNGGKLA----------IEPTYCIGCGL 357

Query: 109 CQEACPVDAIVE 120
           C E C   A+  
Sbjct: 358 CAEVCSDHALKM 369



 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 12/52 (23%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           C  C  +CP  AI IE G                +  C  CGLC  ACP +A
Sbjct: 69  CHACMDVCPVNAIEIEDGAIDV------------LDSCRKCGLCVAACPTEA 108


>gi|254431766|ref|ZP_05045469.1| iron-sulfur cluster-binding protein [Cyanobium sp. PCC 7001]
 gi|197626219|gb|EDY38778.1| iron-sulfur cluster-binding protein [Cyanobium sp. PCC 7001]
          Length = 452

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 12/59 (20%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI-------YCGLCQEACP 114
           C  C++CE  CP  AI  E                ++  KC         CG+C E CP
Sbjct: 346 CRNCRICETNCPPHAIFSEKQTVRGQKKWY-----VNFDKCAPYFAETRGCGICIEVCP 399


>gi|160940739|ref|ZP_02088081.1| hypothetical protein CLOBOL_05633 [Clostridium bolteae ATCC
           BAA-613]
 gi|158436259|gb|EDP14026.1| hypothetical protein CLOBOL_05633 [Clostridium bolteae ATCC
           BAA-613]
          Length = 677

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 25/75 (33%), Gaps = 12/75 (16%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            +C  C  C   C  +AI             +  R  I   KCI CG C + CP  A   
Sbjct: 11  TKCKHCYKCVRYCGVKAI-----------QVKDERAVIMPDKCILCGHCLKICPQSAKTL 59

Query: 121 GPNFEFA-TETRQEL 134
             +        R+ +
Sbjct: 60  KSDLNMVRGFLREGM 74


>gi|154150422|ref|YP_001404040.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Candidatus Methanoregula boonei 6A8]
 gi|153998974|gb|ABS55397.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methanoregula boonei 6A8]
          Length = 88

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 25/70 (35%), Gaps = 6/70 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIE------SGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
                RC  C  C   CP  A+ +       +          +V  D+    C  CG+C 
Sbjct: 6   HVNMSRCTGCGNCVTACPVDALELWTLDPVTNEKIYQVQDGVSVHLDVKKELCAGCGVCV 65

Query: 111 EACPVDAIVE 120
           EACP D I  
Sbjct: 66  EACPYDVIQL 75


>gi|15668693|ref|NP_247492.1| polyferredoxin [Methanocaldococcus jannaschii DSM 2661]
 gi|48474321|sp|P81293|Y51B_METJA RecName: Full=Uncharacterized polyferredoxin-like protein MJ0514.2
 gi|2826291|gb|AAB98509.1| polyferredoxin [Methanocaldococcus jannaschii DSM 2661]
          Length = 408

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/114 (21%), Positives = 40/114 (35%), Gaps = 14/114 (12%)

Query: 9   SFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKL 68
           S  +L EF        + + K                R+R    + ++P    +CI+C+ 
Sbjct: 7   SLWYLYEFAR------KKWIKRFIDAKSDKSSYIPPERYRKIPPIVKFPE---KCISCEG 57

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+  CPA AI +      +          ID   C+ C  C E CP   +    
Sbjct: 58  CKESCPAFAIEMIYNEEYNK-----KLPVIDEGSCVACANCIEVCPTGVLEMDK 106



 Score = 40.5 bits (93), Expect = 0.077,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 3/62 (4%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C+ C LC  +C   AI I    +     R+ + Y ID   CI C +CQ+ C   AI   
Sbjct: 244 ECVKCGLCIEVCSTTAIRIY---KPIIPKRKDICYVIDEDLCIGCRICQKVCGSGAIKIS 300

Query: 122 PN 123
             
Sbjct: 301 KE 302



 Score = 38.5 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 9/65 (13%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
             Y   E+ CI C++C+ +C + AI I    +            I    C+  G C   C
Sbjct: 273 ICYVIDEDLCIGCRICQKVCGSGAIKISKETKLPY---------IVPELCVRGGACAREC 323

Query: 114 PVDAI 118
           PV AI
Sbjct: 324 PVGAI 328



 Score = 38.2 bits (87), Expect = 0.38,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDG----TRRTVRYDIDMIKCIYCGLCQEACP 114
            E  C+AC  C  +CP   + ++      +G      +     ID   C+ CG C+ ACP
Sbjct: 83  DEGSCVACANCIEVCPTGVLEMDKHRVETEGLFFDKPKYSNLIIDEEVCVRCGNCERACP 142

Query: 115 VDAI 118
           ++ I
Sbjct: 143 INVI 146



 Score = 37.8 bits (86), Expect = 0.55,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 11/75 (14%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           +  T   F  +         EE C+ C  CE  CP   I            R+  +Y I+
Sbjct: 108 RVETEGLFFDKPKYSNLIIDEEVCVRCGNCERACPINVIE-----------RKEGKYVIN 156

Query: 100 MIKCIYCGLCQEACP 114
           M  CI C  C + CP
Sbjct: 157 MALCISCKECIKVCP 171



 Score = 35.5 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/51 (29%), Positives = 22/51 (43%)

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
            A + +S     +  R+         KCI C  C+E+CP  AI    N E+
Sbjct: 25  DAKSDKSSYIPPERYRKIPPIVKFPEKCISCEGCKESCPAFAIEMIYNEEY 75


>gi|99081333|ref|YP_613487.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ruegeria sp. TM1040]
 gi|99037613|gb|ABF64225.1| 4Fe-4S ferredoxin iron-sulfur binding [Ruegeria sp. TM1040]
          Length = 247

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 9/67 (13%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           Y +  + C  C+ C   CP  A+ +                +I    C  CGLC  ACP 
Sbjct: 182 YVSLTDGCTLCQHCVWSCPTDAMHLGDTGNT---------LEIRDQACTGCGLCASACPE 232

Query: 116 DAIVEGP 122
             +   P
Sbjct: 233 RVLSILP 239



 Score = 33.9 bits (76), Expect = 7.8,   Method: Composition-based stats.
 Identities = 11/41 (26%), Positives = 13/41 (31%)

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
             PR          Y      C  C  C  +CP DA+  G 
Sbjct: 168 PEPRAETEAPSVAGYVSLTDGCTLCQHCVWSCPTDAMHLGD 208


>gi|303249219|ref|ZP_07335456.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           fructosovorans JJ]
 gi|302489394|gb|EFL49345.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           fructosovorans JJ]
          Length = 652

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 7/66 (10%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               +RC+ C  C   CP +AI            R   + ++    C  CGLC   CP  
Sbjct: 578 HVDIKRCVGCGKCIMTCPFKAIK-------EVEFRGQKKAEVIETVCQGCGLCTSTCPQG 630

Query: 117 AIVEGP 122
           AI    
Sbjct: 631 AIQLSH 636



 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 25/87 (28%), Gaps = 13/87 (14%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRC--------HDGTRRTVRYDIDMIKCI---- 104
               E C  C  C   CP++    +                     +  ID   C     
Sbjct: 236 YVDWELCTGCGACTEKCPSKKNPDKFNENIGPTTSINIPFPQAIPKKAVIDPTTCRQFVK 295

Query: 105 -YCGLCQEACPVDAIVEGPNFEFATET 130
             CG+C + CP  AI      E  TE 
Sbjct: 296 GKCGVCAKVCPTGAIKYDMQDEIVTED 322



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 3/34 (8%)

Query: 102 KCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
           +C+ CG C   CP  AI      EF  + + E+ 
Sbjct: 583 RCVGCGKCIMTCPFKAI---KEVEFRGQKKAEVI 613


>gi|291519334|emb|CBK74555.1| electron transport complex, RnfABCDGE type, B subunit [Butyrivibrio
           fibrisolvens 16/4]
          Length = 263

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 29/83 (34%), Gaps = 11/83 (13%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P++ G        +            CI C  CE +C + AI ++              
Sbjct: 191 IPYDFGHAVRCHNNDKGKDVMAVCSVGCIGCHKCEKVCESDAIHVDG-----------FF 239

Query: 96  YDIDMIKCIYCGLCQEACPVDAI 118
             ID  KC  CG C EACP   I
Sbjct: 240 AHIDQDKCTSCGKCAEACPRHII 262



 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 59  GEERCIACKLCEAICPAQ-----AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
            +E C AC  C A+CP               RCH+  +      +  + CI C  C++ C
Sbjct: 169 DKEACKACGKCVAVCPNHLIELIPYDFGHAVRCHNNDKGKDVMAVCSVGCIGCHKCEKVC 228

Query: 114 PVDAIV 119
             DAI 
Sbjct: 229 ESDAIH 234



 Score = 34.3 bits (77), Expect = 5.8,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 19/64 (29%), Gaps = 11/64 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C+    C   CP  AI I  G              +D   C  CG C   CP   I
Sbjct: 140 CSYGCMGFGSCVKACPFDAIHIIDGVAL-----------VDKEACKACGKCVAVCPNHLI 188

Query: 119 VEGP 122
              P
Sbjct: 189 ELIP 192


>gi|242237942|ref|YP_002986123.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Dickeya dadantii
           Ech703]
 gi|242129999|gb|ACS84301.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Dickeya dadantii
           Ech703]
          Length = 1170

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 22/78 (28%), Gaps = 14/78 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY 96
            A++      E C  C  C  ICP               QA         +         
Sbjct: 679 IAIQVPAWQPEGCTQCNQCAFICPHAAIRPALLSEDERQQAPVALQSKAANGAKGYHYHL 738

Query: 97  DIDMIKCIYCGLCQEACP 114
            +  + C  CG C + CP
Sbjct: 739 AVSPLDCSGCGNCVDICP 756


>gi|212637708|ref|YP_002314233.1| iron-sulfur binding 4Fe-4S ferredoxin [Shewanella piezotolerans
           WP3]
 gi|212559192|gb|ACJ31646.1| 4Fe-4S ferredoxin, iron-sulfur binding [Shewanella piezotolerans
           WP3]
          Length = 559

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 24/74 (32%), Gaps = 9/74 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E C  C  C A CP  A+T                       C+ CGLC   CP   I
Sbjct: 425 NTESCTLCMSCVATCPTGALTDGGDLPALH---------FVEQDCVQCGLCDAGCPEKVI 475

Query: 119 VEGPNFEFATETRQ 132
              P   F   +RQ
Sbjct: 476 SLTPQVNFDKASRQ 489



 Score = 38.9 bits (89), Expect = 0.22,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 24/73 (32%), Gaps = 15/73 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           C  C   CPA AI                  +ID   C   G C  ACP  AI     ++
Sbjct: 196 CNRCLNFCPADAIASVEKK-----------IEIDPYLCHGAGSCTNACPTGAIS----YD 240

Query: 126 FATETRQELYYDK 138
             T      Y +K
Sbjct: 241 LPTPQSMHTYLNK 253


>gi|146415250|ref|XP_001483595.1| hypothetical protein PGUG_04324 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 607

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 25/56 (44%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           K C+  C      +++G  C + T  +    I    CI CG+C + CP DAI    
Sbjct: 19  KKCKQECRKSCPVVKTGKLCIEVTPASKIAFISETLCIGCGICVKKCPFDAINIIN 74


>gi|158319513|ref|YP_001512020.1| nitrite and sulphite reductase 4Fe-4S region [Alkaliphilus
           oremlandii OhILAs]
 gi|158139712|gb|ABW18024.1| nitrite and sulphite reductase 4Fe-4S region [Alkaliphilus
           oremlandii OhILAs]
          Length = 284

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 12/60 (20%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            + RC+ CK C   CP + IT E  P+            IDM  CI+CG C +ACP  AI
Sbjct: 153 EKGRCVGCKQCVRSCPDRMITAEDEPK------------IDMEGCIHCGRCIQACPTGAI 200


>gi|91772644|ref|YP_565336.1| cobyrinic acid a,c-diamide synthase [Methanococcoides burtonii DSM
           6242]
 gi|91711659|gb|ABE51586.1| MinD /ParA family ATPase [Methanococcoides burtonii DSM 6242]
          Length = 290

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 14/71 (19%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
            + L+     +  CI C LC+  C   AIT                  +D  +C  CG+C
Sbjct: 55  FYGLKEAYIDDSLCIQCGLCKEACRFDAITDN--------------IKVDSFECEGCGVC 100

Query: 110 QEACPVDAIVE 120
              CP  AI  
Sbjct: 101 AHICPEGAITL 111


>gi|116753532|ref|YP_842650.1| glutamate synthase (NADPH) [Methanosaeta thermophila PT]
 gi|116664983|gb|ABK14010.1| glutamate synthase (NADPH) GltB2 subunit [Methanosaeta thermophila
           PT]
          Length = 497

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 14/105 (13%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C  C+ CE  C     T ++                   +C  C  C   CP  AI  
Sbjct: 15  DSCDRCRACEHQCSFGVHTYDASQDMMISDNY---------RCAGCQRCAVFCPKGAIEI 65

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWES--EIVRNIVTDSPYR 163
            P     +  R    + +ER+ +   + E+   I+    +D P+R
Sbjct: 66  RP---TPSFYRPNASWSRERIEDIKRQAETGGVILTGCGSDKPFR 107


>gi|58259273|ref|XP_567049.1| hypothetical protein CNA07330 [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|134107419|ref|XP_777594.1| hypothetical protein CNBA7150 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50260288|gb|EAL22947.1| hypothetical protein CNBA7150 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57223186|gb|AAW41230.1| hypothetical protein CNA07330 [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 603

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 3/68 (4%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP---N 123
           K C   C      ++ G  C +      +  I    CI CG+C + CP DAI       N
Sbjct: 19  KRCRQECKRSCPVVKMGKLCIEVNPNDKKAFISEELCIGCGICVKKCPFDAIQILNLPTN 78

Query: 124 FEFATETR 131
            E     R
Sbjct: 79  LESHVTHR 86


>gi|325972702|ref|YP_004248893.1| PAS/PAC sensor protein [Spirochaeta sp. Buddy]
 gi|324027940|gb|ADY14699.1| putative PAS/PAC sensor protein [Spirochaeta sp. Buddy]
          Length = 603

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 11/72 (15%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +         C  C  C   CP +AI ++ G              +   +CIYCG C +
Sbjct: 1   MIHPIYTELTECRDCYKCVRGCPVKAIQVKDGSAV-----------VVKDRCIYCGHCVD 49

Query: 112 ACPVDAIVEGPN 123
            CP  A     +
Sbjct: 50  ICPSHAKKIRND 61


>gi|305663975|ref|YP_003860263.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ignisphaera
           aggregans DSM 17230]
 gi|304378544|gb|ADM28383.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ignisphaera
           aggregans DSM 17230]
          Length = 75

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 10/75 (13%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              +E+CI C  C A+CP +   I                 I+  KC+ C  C   CP +
Sbjct: 6   YVDQEKCIGCAQCYAVCPNKVFVIRDKKSIP----------INADKCVGCRACIVRCPTN 55

Query: 117 AIVEGPNFEFATETR 131
           AI   P   +AT TR
Sbjct: 56  AIRLTPRDIYATYTR 70


>gi|303238580|ref|ZP_07325114.1| hydrogenase, Fe-only [Acetivibrio cellulolyticus CD2]
 gi|302593978|gb|EFL63692.1| hydrogenase, Fe-only [Acetivibrio cellulolyticus CD2]
          Length = 594

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 7/85 (8%)

Query: 59  GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDM--IKCIYCGLCQEACPV 115
              +CI C+ CE  C   Q   I SG             +I M    C YCG C + CP 
Sbjct: 163 DANKCIYCRRCETGCNEVQTCGILSGIGRGFNAHVGPFANIPMVESSCTYCGQCVQVCPT 222

Query: 116 DAIVEGPNFEFATETRQELYYDKER 140
            A+ E     + T+   E   D ++
Sbjct: 223 AALTEV----YHTDKVWEALNDPDK 243


>gi|260881286|ref|ZP_05404060.2| putative 4Fe-4S binding domain protein [Mitsuokella multacida DSM
           20544]
 gi|260849026|gb|EEX69033.1| putative 4Fe-4S binding domain protein [Mitsuokella multacida DSM
           20544]
          Length = 206

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 10/57 (17%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           C+ C+ C ++CP   IT+      H          I+   C+ CG C E CPV AI 
Sbjct: 156 CVGCRRCLSVCPQACITMGENDCAH----------IEDSHCLSCGRCAEVCPVQAIH 202


>gi|218884559|ref|YP_002428941.1| putative ATPase RIL [Desulfurococcus kamchatkensis 1221n]
 gi|218766175|gb|ACL11574.1| putative ATPase RIL [Desulfurococcus kamchatkensis 1221n]
          Length = 602

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 21/67 (31%), Gaps = 6/67 (8%)

Query: 59  GEERCIACKL---CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
               C   K    C   CP      +         +  +   I    CI CG+C + CP 
Sbjct: 8   DRNYCKPDKCSLECIRFCPVNRGKRKKAIELSSDGKYVI---IYEETCIGCGICVKKCPF 64

Query: 116 DAIVEGP 122
           +AI    
Sbjct: 65  NAISIVN 71


>gi|218130960|ref|ZP_03459764.1| hypothetical protein BACEGG_02562 [Bacteroides eggerthii DSM 20697]
 gi|317476271|ref|ZP_07935521.1| 4Fe-4S binding domain-containing protein [Bacteroides eggerthii
           1_2_48FAA]
 gi|217986832|gb|EEC53164.1| hypothetical protein BACEGG_02562 [Bacteroides eggerthii DSM 20697]
 gi|316907545|gb|EFV29249.1| 4Fe-4S binding domain-containing protein [Bacteroides eggerthii
           1_2_48FAA]
          Length = 286

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 8/81 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------DMIKCIYCGLCQ 110
            E +C AC  C   CP   I I    +                       + CI CG C 
Sbjct: 169 DESKCTACGACAKACPRNIIEIRPQGKKSRRVYVQCVNKDKGAVARKACTVACIGCGKCV 228

Query: 111 EACPVDAIVEGPNFEFATETR 131
           + CP +AI    N  +    +
Sbjct: 229 KVCPFEAITLENNLAYIDPNK 249



 Score = 42.0 bits (97), Expect = 0.025,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 9/61 (14%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+ C  C   C   AI +                ++D  KC  CG C +ACP + I   P
Sbjct: 142 CLGCGDCVTACQFDAIHMNPETGLP---------EVDESKCTACGACAKACPRNIIEIRP 192

Query: 123 N 123
            
Sbjct: 193 Q 193



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 11/60 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI C  C  +CP +AIT+E+               ID  KC  C  C+E CP   I
Sbjct: 217 CTVACIGCGKCVKVCPFEAITLENNLAY-----------IDPNKCKSCRKCEEVCPQGTI 265


>gi|167772590|ref|ZP_02444643.1| hypothetical protein ANACOL_03969 [Anaerotruncus colihominis DSM
           17241]
 gi|167665068|gb|EDS09198.1| hypothetical protein ANACOL_03969 [Anaerotruncus colihominis DSM
           17241]
          Length = 595

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/96 (28%), Positives = 37/96 (38%), Gaps = 15/96 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            LRY F+ +   +   ++            L +Y   +E+C  C LC   CP  AI+   
Sbjct: 512 TLRY-FRDEYIAHVVDKRCPAGVCKH----LLQYRIEKEKCKGCTLCARQCPVGAISGS- 565

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                        + ID  KCI CG C E C   AI
Sbjct: 566 ---------VKNPHVIDQTKCIKCGACMEKCKFGAI 592


>gi|139438951|ref|ZP_01772411.1| Hypothetical protein COLAER_01417 [Collinsella aerofaciens ATCC
           25986]
 gi|133775662|gb|EBA39482.1| Hypothetical protein COLAER_01417 [Collinsella aerofaciens ATCC
           25986]
          Length = 603

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 31/95 (32%), Gaps = 7/95 (7%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQA---ITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           G           ++CI C  C  +C +     I   +    H       R  I    C+ 
Sbjct: 150 GWDFDFPIIRDNDKCIKCMRCIKVCESVQGLGIWDLTNRATHTAVGTRGRAPIGKTDCVA 209

Query: 106 CGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140
           CG C   CP  A+ E  + E       +   D ++
Sbjct: 210 CGQCITHCPTGALRERDDTETVF----DAIADPDK 240


>gi|119896807|ref|YP_932020.1| electron transport complex protein RnfB [Azoarcus sp. BH72]
 gi|119669220|emb|CAL93133.1| probable electron transport complex protein RnfB [Azoarcus sp.
           BH72]
          Length = 175

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 20/61 (32%), Gaps = 10/61 (16%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C  C   CP  AI                 + +    C  C  C++ CP  AI   P
Sbjct: 110 CIGCTKCYKSCPTDAILG----------AVKQVHTVIRDACTGCAKCEDVCPTGAITLSP 159

Query: 123 N 123
            
Sbjct: 160 I 160


>gi|330810232|ref|YP_004354694.1| dihydropyrimidine dehydrogenase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327378340|gb|AEA69690.1| putative dihydropyrimidine dehydrogenase [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 424

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117
            ++ CI C  C   C   +    +  +  DGT +   Y++   +C+ C LCQ  CPV   
Sbjct: 341 DQQACIGCGRCHIACEDTSHQAIASLKQADGTHK---YEVIDEECVGCNLCQITCPVQDC 397

Query: 118 IVE 120
           I  
Sbjct: 398 IEM 400


>gi|301064419|ref|ZP_07204844.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300441501|gb|EFK05841.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 369

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 11/59 (18%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++C+ C  C   C   AI+++                I+  KC+ CG C   CP +AI
Sbjct: 193 RKKCVGCGDCVRHCAGSAISLKEKKAF-----------INTEKCVGCGECILICPNEAI 240


>gi|295112089|emb|CBL28839.1| hydrogenases, Fe-only [Synergistetes bacterium SGP1]
          Length = 568

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 20/63 (31%), Gaps = 3/63 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIE---SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
              +CI C  C  +C                    R      +   +CI CG C   CP 
Sbjct: 141 NPNKCILCGDCVRVCREIQGMGILDFVNRGSEARVRPAFNEPMIHTRCISCGQCAAVCPT 200

Query: 116 DAI 118
           +AI
Sbjct: 201 NAI 203


>gi|295094467|emb|CBK83558.1| Iron only hydrogenase large subunit, C-terminal domain [Coprococcus
           sp. ART55/1]
          Length = 484

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 22/70 (31%), Gaps = 8/70 (11%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY--------DIDMIKCIYCGL 108
                +C  C  C   CP  AI     P         +           ID  KCI CG 
Sbjct: 125 YIDPSKCKECGQCAKACPYNAIADLMRPCIKSCPVGAISVAENGTGIAVIDKDKCIDCGS 184

Query: 109 CQEACPVDAI 118
           C   CP  AI
Sbjct: 185 CIHKCPFGAI 194



 Score = 37.4 bits (85), Expect = 0.74,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 13/60 (21%)

Query: 61  ERCIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C  C    C+  C   AI++                 ID  KC  CG C +ACP +AI
Sbjct: 98  DNCQKCMGRACQQACRFGAISMGRDKSY-----------IDPSKCKECGQCAKACPYNAI 146


>gi|266619056|ref|ZP_06111991.1| sigma-54 dependent transcriptional regulator [Clostridium hathewayi
           DSM 13479]
 gi|288869439|gb|EFD01738.1| sigma-54 dependent transcriptional regulator [Clostridium hathewayi
           DSM 13479]
          Length = 577

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 11/57 (19%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
            +C  C  C   C  +AI             +  R +I   KCI CG C + CP  A
Sbjct: 9   TKCKHCYKCVRNCEVKAI-----------MIKDERAEIMPDKCILCGKCMQVCPQSA 54


>gi|237843379|ref|XP_002370987.1| ABC transporter, putative [Toxoplasma gondii ME49]
 gi|211968651|gb|EEB03847.1| ABC transporter, putative [Toxoplasma gondii ME49]
 gi|221481811|gb|EEE20181.1| ABC transporter, putative [Toxoplasma gondii GT1]
 gi|221502311|gb|EEE28044.1| ABC transporter, putative [Toxoplasma gondii VEG]
          Length = 613

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            LR      +RC   K C   C      + +G  C +    +    I    CI CG+C +
Sbjct: 16  RLRIAIVNADRCKP-KKCRQECKRNCPVVRTGKLCIEADATSKIAFISEPLCIGCGICVK 74

Query: 112 ACPVDAI 118
            CP +AI
Sbjct: 75  KCPFEAI 81


>gi|218780897|ref|YP_002432215.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218762281|gb|ACL04747.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 363

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 11/62 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            EE CI C  C   CP  A T                  +D  +CI CGLC   CP +A+
Sbjct: 277 NEEECINCGTCVERCPMDAFTEGED-----------VISVDPGRCIGCGLCTTTCPTEAL 325

Query: 119 VE 120
             
Sbjct: 326 SL 327



 Score = 37.8 bits (86), Expect = 0.45,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 4/61 (6%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C  C+ C  I      + +  P+             +  +CI CG C E CP+DA  EG 
Sbjct: 245 CNCCRECCGILK----SFKFFPKPALMATSDYVVQFNEEECINCGTCVERCPMDAFTEGE 300

Query: 123 N 123
           +
Sbjct: 301 D 301


>gi|77919203|ref|YP_357018.1| NADP-reducing hydrogenase subunit C [Pelobacter carbinolicus DSM
           2380]
 gi|77545286|gb|ABA88848.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Pelobacter carbinolicus DSM 2380]
          Length = 486

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 10/67 (14%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            L  Y   +++C+ C LC  +CP   I+ +              + ID   CI CG C +
Sbjct: 427 ELLEYTVVDQKCVGCTLCAKVCPVNCISGKPKE----------VHVIDQAACIKCGACLD 476

Query: 112 ACPVDAI 118
            C  DAI
Sbjct: 477 KCKFDAI 483



 Score = 38.5 bits (88), Expect = 0.31,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 17/44 (38%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            +             + Y +   KC+ C LC + CPV+ I   P
Sbjct: 414 HVIDKKCPAGVCAELLEYTVVDQKCVGCTLCAKVCPVNCISGKP 457


>gi|11498296|ref|NP_069522.1| iron-sulfur cluster binding protein [Archaeoglobus fulgidus DSM
           4304]
 gi|2649926|gb|AAB90550.1| iron-sulfur cluster binding protein [Archaeoglobus fulgidus DSM
           4304]
          Length = 368

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 10/89 (11%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              RCIAC +C   CP +AI  +                +D  KC+ CG+C   CP++AI
Sbjct: 285 DTSRCIACGICMLRCPMKAIKAKINREPAS---------VDAEKCLGCGVCVPTCPMEAI 335

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDR 147
                 E   E    + Y +E L + G  
Sbjct: 336 ELVERDEL-LELPDGMTYVQELLADKGRD 363


>gi|75761864|ref|ZP_00741792.1| Formate dehydrogenase alpha chain [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74490647|gb|EAO53935.1| Formate dehydrogenase alpha chain [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 254

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              YP+E          +     Y     +CIAC  C  +C    +             R
Sbjct: 136 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 193

Query: 93  TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120
            +     +I+   C+ CG C   CP +A++E
Sbjct: 194 VIWDEGVNINDSSCVSCGQCVTICPCNALME 224



 Score = 35.1 bits (79), Expect = 3.5,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%)

Query: 54  RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           R   N    C  C      C+            Q    E      +       Y  D  +
Sbjct: 104 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 163

Query: 103 CIYCGLCQEAC 113
           CI CG C E C
Sbjct: 164 CIACGQCVEVC 174


>gi|68468947|ref|XP_721532.1| RNAse L inhibitor-type ATP binding cassette protein [Candida
           albicans SC5314]
 gi|68469496|ref|XP_721261.1| RNAse L inhibitor-type ATP binding cassette protein [Candida
           albicans SC5314]
 gi|46443170|gb|EAL02454.1| RNAse L inhibitor-type ATP binding cassette protein [Candida
           albicans SC5314]
 gi|46443452|gb|EAL02734.1| RNAse L inhibitor-type ATP binding cassette protein [Candida
           albicans SC5314]
 gi|238879189|gb|EEQ42827.1| ATP-binding cassette sub-family E member 1 [Candida albicans WO-1]
          Length = 622

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 25/56 (44%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           K C+  C      +++G  C + T  +    I    CI CG+C + CP DAI    
Sbjct: 34  KKCKQECRKSCPVVKTGKLCIEVTPASKIAFISETLCIGCGICVKKCPFDAITIIN 89


>gi|327401002|ref|YP_004341841.1| methyl-viologen-reducing hydrogenase subunit delta [Archaeoglobus
           veneficus SNP6]
 gi|327316510|gb|AEA47126.1| methyl-viologen-reducing hydrogenase delta subunit [Archaeoglobus
           veneficus SNP6]
          Length = 793

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 12/62 (19%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            E C  C LC+ +C   AI +  G                   C  CG C  ACP +A+ 
Sbjct: 570 PELCFGCNLCKEVCDFNAIDMAWGKAYVKPN------------CTGCGACAAACPTNAMQ 617

Query: 120 EG 121
            G
Sbjct: 618 IG 619



 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 7/65 (10%)

Query: 63  CIACKLCEAICPAQAIT-------IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           C  C +C  +CP +                        ++Y ID   C+ CG+C + C  
Sbjct: 240 CTGCGVCATLCPVEVPNEFEMGLANRKAIYIPFPQAVPLQYTIDAEHCLGCGMCSDVCSA 299

Query: 116 DAIVE 120
            AI  
Sbjct: 300 SAIDF 304


>gi|308094766|ref|ZP_07663043.1| electron transport complex protein RnfC [Vibrio parahaemolyticus
           AN-5034]
 gi|308093502|gb|EFO43197.1| electron transport complex protein RnfC [Vibrio parahaemolyticus
           AN-5034]
          Length = 772

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            CI C  C   CPA  +  +               ++++  CI CG C   CP
Sbjct: 280 ECIRCGQCAEACPAS-LLPQQLQWHAKAEEYDKLEELNLKDCIECGACAFVCP 331



 Score = 35.1 bits (79), Expect = 2.9,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 19/43 (44%)

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           +  +Q    ++       TR  +      ++CI CG C EACP
Sbjct: 250 LPHSQVPITKTANCILAPTRHEISAHQYEMECIRCGQCAEACP 292


>gi|292492467|ref|YP_003527906.1| formate dehydrogenase, subunit alpha [Nitrosococcus halophilus Nc4]
 gi|291581062|gb|ADE15519.1| formate dehydrogenase, alpha subunit [Nitrosococcus halophilus Nc4]
          Length = 936

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114
             + CI C  C   C  +    +       G   T+ +D    +    C+ CG C +ACP
Sbjct: 149 NLDACIQCTRCVRACREE-QVNDVIGYAFRGPHSTIVFDQGDPMGESTCVACGECVQACP 207

Query: 115 VDAIV 119
             A++
Sbjct: 208 TGALM 212


>gi|288561259|ref|YP_003424745.1| energy-converting hydrogenase B subunit L EhbL [Methanobrevibacter
           ruminantium M1]
 gi|288543969|gb|ADC47853.1| energy-converting hydrogenase B subunit L EhbL [Methanobrevibacter
           ruminantium M1]
          Length = 222

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)

Query: 59  GEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            E+ CI C  C  +CP  A+T+   ++  +  +G  +T   ++D  KC+ C  C + CP
Sbjct: 47  DEQACIGCGGCANVCPTGAVTMKPLQTPVKIKEGWVKTEVPELDPFKCVVCYWCHDFCP 105



 Score = 38.2 bits (87), Expect = 0.36,   Method: Composition-based stats.
 Identities = 9/20 (45%), Positives = 10/20 (50%)

Query: 103 CIYCGLCQEACPVDAIVEGP 122
           CI CG C   CP  A+   P
Sbjct: 51  CIGCGGCANVCPTGAVTMKP 70


>gi|258516623|ref|YP_003192845.1| formate dehydrogenase, alpha subunit [Desulfotomaculum acetoxidans
           DSM 771]
 gi|257780328|gb|ACV64222.1| formate dehydrogenase, alpha subunit [Desulfotomaculum acetoxidans
           DSM 771]
          Length = 900

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 3/65 (4%)

Query: 59  GEERCIACKLCEAIC-PAQAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLCQEACPV 115
              +CI C  C   C   Q   +          +     D+     +C++CG C   CPV
Sbjct: 144 DMNKCILCGKCVRACAEVQGRGVIDFAYRGFNAKVATAMDLPLIESECVFCGSCVAVCPV 203

Query: 116 DAIVE 120
            A+ E
Sbjct: 204 GALTE 208


>gi|227012832|gb|ACP09042.1| RnfC-related protein [Vibrio cholerae O395]
          Length = 800

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 29/109 (26%), Gaps = 20/109 (18%)

Query: 13  LKEFVGA---FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69
           L   +         L +          P  K +        + L    N    CI C  C
Sbjct: 360 LPRLIMGGPMMGFTLPH-------AQVPITKTANCILAPTRNELTSSDNEMA-CIRCGQC 411

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMI----KCIYCGLCQEACP 114
              CP   +     P+      +   +D         CI CG C   CP
Sbjct: 412 AEACPVSLL-----PQQLQWHAKAEEFDKCEELDLKDCIECGACAYVCP 455



 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 10/13 (76%), Positives = 10/13 (76%)

Query: 103 CIYCGLCQEACPV 115
           CI CG C EACPV
Sbjct: 405 CIRCGQCAEACPV 417


>gi|218670322|ref|ZP_03519993.1| dihydropyrimidine dehydrogenase [Rhizobium etli GR56]
          Length = 179

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 6/94 (6%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI C  C       A    S     +       +++   +C+ 
Sbjct: 72  QYLNLNYVAKAKIDQDACIKCGRCHI-----ACEDTSHQAITNVVNGLRHFEVIDEECVG 126

Query: 106 CGLCQEACPV-DAIVEGPNFEFATETRQELYYDK 138
           C LC   CPV + I        + + R     D 
Sbjct: 127 CNLCVSVCPVENCITMEQLPAGSLDKRTGRVVDP 160


>gi|169342408|ref|ZP_02863472.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium
           perfringens C str. JGS1495]
 gi|169299528|gb|EDS81592.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium
           perfringens C str. JGS1495]
          Length = 273

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 11/70 (15%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
               N    CI CKLCE  CP++AI +E+               ID  KC  CG+C   C
Sbjct: 210 IVNQNCSVGCIGCKLCEKNCPSEAIRVENNLAI-----------IDYEKCTSCGICVSKC 258

Query: 114 PVDAIVEGPN 123
           P  AI    N
Sbjct: 259 PKKAINLREN 268



 Score = 37.0 bits (84), Expect = 0.88,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 5/78 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCIYCGLCQEAC 113
              +C+ACK C   CP   I I    +    +        +      + CI C LC++ C
Sbjct: 170 DSSKCVACKACVRACPQNLIDIIKEDQKVIVSCNSNDSGKIVNQNCSVGCIGCKLCEKNC 229

Query: 114 PVDAIVEGPNFEFATETR 131
           P +AI    N       +
Sbjct: 230 PSEAIRVENNLAIIDYEK 247


>gi|220920301|ref|YP_002495602.1| formate dehydrogenase subunit alpha [Methylobacterium nodulans ORS
           2060]
 gi|219944907|gb|ACL55299.1| formate dehydrogenase, alpha subunit [Methylobacterium nodulans ORS
           2060]
          Length = 952

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 2/68 (2%)

Query: 55  RYPNGEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
            +     +CI C  C   C        +    R  D        +    +C+ CG C +A
Sbjct: 164 YFTYDPAKCIVCNRCVRACEEVQGTFALTIAGRGFDSRVAAGPTNFFESECVSCGACVQA 223

Query: 113 CPVDAIVE 120
           CP   + E
Sbjct: 224 CPTATLQE 231


>gi|15641030|ref|NP_230661.1| electron transport complex protein RnfC [Vibrio cholerae O1 biovar
           El Tor str. N16961]
 gi|227081189|ref|YP_002809740.1| RnfC-related protein [Vibrio cholerae M66-2]
 gi|229505386|ref|ZP_04394896.1| electron transport complex protein RnfC [Vibrio cholerae BX 330286]
 gi|229510944|ref|ZP_04400423.1| electron transport complex protein RnfC [Vibrio cholerae B33]
 gi|229608405|ref|YP_002879053.1| electron transport complex protein RnfC [Vibrio cholerae MJ-1236]
 gi|9655479|gb|AAF94176.1| RnfC-related protein [Vibrio cholerae O1 biovar El Tor str. N16961]
 gi|227009077|gb|ACP05289.1| RnfC-related protein [Vibrio cholerae M66-2]
 gi|229350909|gb|EEO15850.1| electron transport complex protein RnfC [Vibrio cholerae B33]
 gi|229357609|gb|EEO22526.1| electron transport complex protein RnfC [Vibrio cholerae BX 330286]
 gi|229371060|gb|ACQ61483.1| electron transport complex protein RnfC [Vibrio cholerae MJ-1236]
          Length = 801

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 29/109 (26%), Gaps = 20/109 (18%)

Query: 13  LKEFVGA---FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69
           L   +         L +          P  K +        + L    N    CI C  C
Sbjct: 360 LPRLIMGGPMMGFTLPH-------AQVPITKTANCILAPTRNELTSSDNEMA-CIRCGQC 411

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMI----KCIYCGLCQEACP 114
              CP   +     P+      +   +D         CI CG C   CP
Sbjct: 412 AEACPVSLL-----PQQLQWHAKAEEFDKCEELDLKDCIECGACAYVCP 455



 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 10/13 (76%), Positives = 10/13 (76%)

Query: 103 CIYCGLCQEACPV 115
           CI CG C EACPV
Sbjct: 405 CIRCGQCAEACPV 417


>gi|325280763|ref|YP_004253305.1| ferredoxin [Odoribacter splanchnicus DSM 20712]
 gi|324312572|gb|ADY33125.1| ferredoxin [Odoribacter splanchnicus DSM 20712]
          Length = 56

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 11/58 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + CI+C  CE  CP  AI++ +             Y+ID   C  CG C   CPV+AI
Sbjct: 7   DDCISCGTCEGECPVGAISMGAD-----------HYEIDPNACTDCGTCAGVCPVEAI 53


>gi|323692574|ref|ZP_08106807.1| hypothetical protein HMPREF9475_01670 [Clostridium symbiosum
           WAL-14673]
 gi|323503440|gb|EGB19269.1| hypothetical protein HMPREF9475_01670 [Clostridium symbiosum
           WAL-14673]
          Length = 599

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 11/77 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +R     E +C+ C  C   C  +A+ I+ G           R ++   KC+ CG C   
Sbjct: 1   MRIIDFKESKCMHCYKCVRYCDVKAVMIKDG-----------RAEVIEDKCVLCGHCLHV 49

Query: 113 CPVDAIVEGPNFEFATE 129
           CP  A     + +    
Sbjct: 50  CPQSAKTMASDLDTVKY 66


>gi|323483612|ref|ZP_08088996.1| hypothetical protein HMPREF9474_00745 [Clostridium symbiosum
           WAL-14163]
 gi|323403039|gb|EGA95353.1| hypothetical protein HMPREF9474_00745 [Clostridium symbiosum
           WAL-14163]
          Length = 599

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 11/77 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +R     E +C+ C  C   C  +A+ I+ G           R ++   KC+ CG C   
Sbjct: 1   MRIIDFKESKCMHCYKCVRYCDVKAVMIKDG-----------RAEVIEDKCVLCGHCLHV 49

Query: 113 CPVDAIVEGPNFEFATE 129
           CP  A     + +    
Sbjct: 50  CPQSAKTMASDLDTVKY 66


>gi|297616922|ref|YP_003702081.1| NIL domain protein [Syntrophothermus lipocalidus DSM 12680]
 gi|297144759|gb|ADI01516.1| NIL domain protein [Syntrophothermus lipocalidus DSM 12680]
          Length = 139

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 10/70 (14%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
             EE CI C  C + CP  A+ I    +             D  +C+ CG+C + CP  A
Sbjct: 80  WHEEICIQCGACASFCPTGALEITDREKMEVSF--------DNSRCVVCGMCLDCCPTRA 131

Query: 118 IVEGPNFEFA 127
           +     FE A
Sbjct: 132 VKLH--FEVA 139


>gi|326790679|ref|YP_004308500.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427]
 gi|326541443|gb|ADZ83302.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427]
          Length = 624

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 27/70 (38%), Gaps = 10/70 (14%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             LR+    E  C  C  C   CP  AI+ +              + ID  KCI CG C 
Sbjct: 564 QKLRQIYIDEVLCKGCSKCARSCPVGAISGQIKKP----------FKIDEKKCIKCGACI 613

Query: 111 EACPVDAIVE 120
            AC   A+ E
Sbjct: 614 GACAFKAVKE 623



 Score = 33.9 bits (76), Expect = 8.1,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 16/40 (40%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            I          ++  +  ID + C  C  C  +CPV AI
Sbjct: 552 HIVDKKCPSKTCQKLRQIYIDEVLCKGCSKCARSCPVGAI 591


>gi|255745043|ref|ZP_05418993.1| iron-sulfur cluster-binding protein [Vibrio cholera CIRS 101]
 gi|255737514|gb|EET92909.1| iron-sulfur cluster-binding protein [Vibrio cholera CIRS 101]
          Length = 504

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 9/75 (12%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             C  C  C A+CP +A+ +                      C+ CGLC +ACP   +  
Sbjct: 369 SDCTLCMSCVAVCPTRALHLAGDSPA---------LRFIEQDCVQCGLCVKACPEQVLSA 419

Query: 121 GPNFEFATETRQELY 135
            P   +    RQ + 
Sbjct: 420 TPQLNWNKAARQGVV 434



 Score = 40.9 bits (94), Expect = 0.062,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 12/80 (15%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           C+ C   CPA A++ E   +         R  I+   C   G C  ACP +AI       
Sbjct: 137 CERCVDACPAGALSSEGSEQTGH------RIQINPYLCQGVGTCATACPTEAIH------ 184

Query: 126 FATETRQELYYDKERLLNNG 145
           +A     +     ERLL N 
Sbjct: 185 YALPNPTDTQKFIERLLANY 204



 Score = 33.9 bits (76), Expect = 7.4,   Method: Composition-based stats.
 Identities = 6/24 (25%), Positives = 8/24 (33%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVE 120
           +     C  C  C   CP  A+  
Sbjct: 365 ECQTSDCTLCMSCVAVCPTRALHL 388


>gi|240102569|ref|YP_002958878.1| hypothetical protein TGAM_0512 [Thermococcus gammatolerans EJ3]
 gi|239910123|gb|ACS33014.1| 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS
           reductase), containing one PUA domain and 2 4Fe-4S
           binding domains [Thermococcus gammatolerans EJ3]
          Length = 634

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 17/93 (18%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
            FF        P E+ + S  +  + A          C+ C +C   CP +A++I+    
Sbjct: 550 EFFTRTRKAKAPDEREAVSAYYLVKRA--------YECVGCGVCVGKCPEEALSIDE--- 598

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                 ++ +  +D  +C +C  C E CP+  I
Sbjct: 599 ------KSKKIVVDWNRCTHCRECMEVCPLLKI 625


>gi|255659119|ref|ZP_05404528.1| ferredoxin hydrogenase [Mitsuokella multacida DSM 20544]
 gi|260848564|gb|EEX68571.1| ferredoxin hydrogenase [Mitsuokella multacida DSM 20544]
          Length = 589

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 24/70 (34%), Gaps = 3/70 (4%)

Query: 59  GEERCIACKLCEAICPA---QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
              +CI C  C   C      A    +G              ++   CI CG C   CP 
Sbjct: 156 DPSKCIRCGRCIRACKDVQGIAALTYAGRSSDIVVTTAYNKPMETTDCILCGQCSLVCPT 215

Query: 116 DAIVEGPNFE 125
            A+VE  + E
Sbjct: 216 GALVEKDDTE 225


>gi|187932889|ref|YP_001884306.1| hydrogenase-1 [Clostridium botulinum B str. Eklund 17B]
 gi|187721042|gb|ACD22263.1| hydrogenase-1 [Clostridium botulinum B str. Eklund 17B]
          Length = 576

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPV 115
              +C+ C  CEA C  +  T        +G ++    +    D   C+ CG C  ACPV
Sbjct: 144 DRSKCVLCGRCEAACSEKTATNSIKIIDDNGDKKVATIEGKCFDDTNCLLCGQCIAACPV 203

Query: 116 DAIVEGPNFE 125
           DA+ E  + E
Sbjct: 204 DALSEKSHTE 213



 Score = 35.1 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 31/100 (31%), Gaps = 6/100 (6%)

Query: 20  FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79
             L      + K  I    EK   + + R    L ++      C   + CE +       
Sbjct: 59  LALSCETLVQDKMVIRTDSEKVQEAIKLRVAEMLDKHEFKCGPCKRREDCEFLKLVIKTK 118

Query: 80  IESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEAC 113
             +        +     D      ID  KC+ CG C+ AC
Sbjct: 119 ARANKPFIVKDKSQYVDDRSKSIVIDRSKCVLCGRCEAAC 158


>gi|154151012|ref|YP_001404630.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Candidatus Methanoregula boonei 6A8]
 gi|153999564|gb|ABS55987.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methanoregula boonei 6A8]
          Length = 87

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 23/71 (32%), Gaps = 6/71 (8%)

Query: 57  PNGEERCIACKLCEAICPAQA------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
                RC  C  C   CP  A        +      H    +++  D+    C  CG+C 
Sbjct: 6   HVNMSRCTGCGNCVVACPVNALELYTIDPVTKEKIYHVLNGKSINLDVRTELCAGCGVCV 65

Query: 111 EACPVDAIVEG 121
            ACP   I   
Sbjct: 66  GACPYKVISLS 76



 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 16/34 (47%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
            ++M +C  CG C  ACPV+A+          E 
Sbjct: 6   HVNMSRCTGCGNCVVACPVNALELYTIDPVTKEK 39


>gi|153930946|ref|YP_001382420.1| iron-sulfur cluster-binding protein [Clostridium botulinum A str.
           ATCC 19397]
 gi|153936038|ref|YP_001385972.1| iron-sulfur cluster-binding protein [Clostridium botulinum A str.
           Hall]
 gi|152926990|gb|ABS32490.1| iron-sulfur cluster-binding protein [Clostridium botulinum A str.
           ATCC 19397]
 gi|152931952|gb|ABS37451.1| iron-sulfur cluster-binding protein [Clostridium botulinum A str.
           Hall]
          Length = 387

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           E+CI C  C  +CP +   I+   +             +M KCI C  CQE CP  AI
Sbjct: 319 EKCIGCNRCAEVCPEKPYVIDMIKKGGKKIPVW-----NMKKCIRCFCCQELCPKGAI 371


>gi|94498903|ref|ZP_01305441.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB
           [Oceanobacter sp. RED65]
 gi|94428535|gb|EAT13507.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB
           [Oceanobacter sp. RED65]
          Length = 195

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 10/62 (16%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C   CP  AI   +             + +   +C  C LC + CPVD I  
Sbjct: 115 DECIGCTKCIQACPVDAILGAAKQ----------MHTVIEDECTGCDLCLDPCPVDCIDM 164

Query: 121 GP 122
            P
Sbjct: 165 LP 166



 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           I   +CI C  C +ACPVDAI
Sbjct: 112 IREDECIGCTKCIQACPVDAI 132


>gi|88603099|ref|YP_503277.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methanospirillum hungatei
           JF-1]
 gi|88188561|gb|ABD41558.1| CoB--CoM heterodisulfide reductase subunit A [Methanospirillum
           hungatei JF-1]
          Length = 671

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 28/80 (35%), Gaps = 9/80 (11%)

Query: 45  PRFRGEHALRRYP--NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           P   GE  L  Y     +E C  C +C  +CP  A+++                 +   K
Sbjct: 580 PIHMGEVELEPYFAMCIDELCAGCGMCVNLCPYSALSLGEK-------NGRTVMVVTEAK 632

Query: 103 CIYCGLCQEACPVDAIVEGP 122
           C  CG C   CP  AI    
Sbjct: 633 CKGCGTCGGFCPGGAIKMQH 652


>gi|118579705|ref|YP_900955.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pelobacter propionicus DSM 2379]
 gi|118502415|gb|ABK98897.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pelobacter
           propionicus DSM 2379]
          Length = 264

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 26/89 (29%), Gaps = 13/89 (14%)

Query: 36  YPFEKGSTSPRFRGEHAL-RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            P  +      +R    L          CI C  C  ICP  AI+   G           
Sbjct: 165 VPSLEVPGDSPYREWKGLSIPPETDASLCIRCGTCVRICPTAAISSGVGMPTD------- 217

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                ++ CI C  C   CP  A V    
Sbjct: 218 -----LVACIACCACVRECPTGARVMRDE 241


>gi|330823669|ref|YP_004386972.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alicycliphilus denitrificans K601]
 gi|329309041|gb|AEB83456.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alicycliphilus denitrificans K601]
          Length = 687

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 26/71 (36%), Gaps = 9/71 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++RC  C  C + CPA A+             R          C+ CGLC+  CP  AI
Sbjct: 554 DKDRCTLCMSCVSACPASALQDNPQAPQLRFIERN---------CVQCGLCERTCPEGAI 604

Query: 119 VEGPNFEFATE 129
              P      E
Sbjct: 605 ALQPRLLLTPE 615



 Score = 40.5 bits (93), Expect = 0.079,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 9/55 (16%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C  C  IC A+AI  +   +         +  ++   C+ CG C   CP  A+
Sbjct: 306 VGCSACVDICSAEAIASDPARQ---------QVVVNPHLCVGCGACTTVCPTGAM 351



 Score = 37.8 bits (86), Expect = 0.50,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 13/30 (43%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           ID+  C  C  C  ACP  AI      + A
Sbjct: 180 IDLDLCTRCNACVAACPEGAIGLDYQIDMA 209



 Score = 37.8 bits (86), Expect = 0.51,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 32/88 (36%), Gaps = 16/88 (18%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             L   P   + C  C  C A CP  AI ++              Y IDM  C     C 
Sbjct: 173 QWLADNPIDLDLCTRCNACVAACPEGAIGLD--------------YQIDMAACTGHRDCV 218

Query: 111 EACPVD-AIVEGPNFEFATETRQELYYD 137
           +AC V  AI      E  +++  +L  D
Sbjct: 219 KACAVAGAIRFDREAEPQSQSF-DLVLD 245


>gi|325578317|ref|ZP_08148452.1| electron transport complex protein RnfC [Haemophilus parainfluenzae
           ATCC 33392]
 gi|325160053|gb|EGC72182.1| electron transport complex protein RnfC [Haemophilus parainfluenzae
           ATCC 33392]
          Length = 778

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 1/58 (1%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           P  E+ CI C  C   CP   +  +               +  +  CI CG+C   CP
Sbjct: 372 PEPEQSCIRCSACSDACPVN-LMPQQLYWYARSEDHQKSEEYCLKDCIECGVCAYVCP 428


>gi|325261916|ref|ZP_08128654.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium sp.
           D5]
 gi|324033370|gb|EGB94647.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium sp.
           D5]
          Length = 1180

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 23/81 (28%), Gaps = 15/81 (18%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA------------QAITIESGPRCHDGTRRTVR 95
           RG           E CI C  C  +CP              A   E            ++
Sbjct: 680 RGIAVDIPMWK-PENCIQCNRCAYVCPHAVIRPVALTEEEMAKAPEGLKTIDMVGMPGMK 738

Query: 96  YDIDMI--KCIYCGLCQEACP 114
           + I +    C  CG C   CP
Sbjct: 739 FTITVSAYDCTGCGSCANVCP 759


>gi|323484983|ref|ZP_08090337.1| hypothetical protein HMPREF9474_02088 [Clostridium symbiosum
           WAL-14163]
 gi|323692817|ref|ZP_08107044.1| iron-sulfur cluster-binding protein [Clostridium symbiosum
           WAL-14673]
 gi|323401725|gb|EGA94069.1| hypothetical protein HMPREF9474_02088 [Clostridium symbiosum
           WAL-14163]
 gi|323503131|gb|EGB18966.1| iron-sulfur cluster-binding protein [Clostridium symbiosum
           WAL-14673]
          Length = 305

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 15/72 (20%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L +    + +C++C  C   C                    V    +  +CI CG+C  A
Sbjct: 233 LFQMKVDKSKCVSCGKCARACKMD---------------VDVTKTPNHTECIRCGMCVRA 277

Query: 113 CPVDAIVEGPNF 124
           CP +A+     F
Sbjct: 278 CPTNAVCFRYGF 289


>gi|307353350|ref|YP_003894401.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanoplanus petrolearius DSM 11571]
 gi|307156583|gb|ADN35963.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanoplanus
           petrolearius DSM 11571]
          Length = 201

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 34/117 (29%), Gaps = 13/117 (11%)

Query: 24  LRYFFKAKTTINYPFEKGST---SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80
           L+ F + +    + F K         FRG   L                E  C     + 
Sbjct: 9   LKEFCRPEWWRKFLFAKTPPLVTPAHFRGYPELTGNE---------CSHELRCMMICPSP 59

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
            +         +     I    CI CGLC EACP + +  G   E   + +      
Sbjct: 60  GAIEVLKGDDGKWA-PVIYKGHCIRCGLCVEACPDNVLKSGDILERNEDDKTYFLAT 115



 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 4/59 (6%)

Query: 62  RCIACKLCEAICPAQAITI----ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            CI C LC   CP   +      E           T    +D  KC+ CG C  ACPV+
Sbjct: 80  HCIRCGLCVEACPDNVLKSGDILERNEDDKTYFLATYHLHVDNAKCMRCGNCAVACPVN 138



 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 21/72 (29%), Gaps = 8/72 (11%)

Query: 55  RYPNGEERCIACKLCEAICPA--------QAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
                  +C+ C  C   CP          +    S        +      +   KC  C
Sbjct: 117 HLHVDNAKCMRCGNCAVACPVNKEEDPRLGSTGTSSNDDVIMRVKEGNLTFLHPEKCTGC 176

Query: 107 GLCQEACPVDAI 118
             C+E CP  AI
Sbjct: 177 KTCEETCPNGAI 188


>gi|266619158|ref|ZP_06112093.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Clostridium
           hathewayi DSM 13479]
 gi|288869304|gb|EFD01603.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Clostridium
           hathewayi DSM 13479]
          Length = 425

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 6/65 (9%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERC+ C  C  +CP  A+++E G                   C+ CG+C   C V AI  
Sbjct: 293 ERCVGCGKCAKVCPVLAVSMEEGENGKKKAVVNK------EICLGCGVCARNCAVKAIEL 346

Query: 121 GPNFE 125
               E
Sbjct: 347 QRRPE 351



 Score = 40.5 bits (93), Expect = 0.075,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 4/43 (9%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139
           +I + +C+ CG C + CPV A+      E     +++   +KE
Sbjct: 289 EISLERCVGCGKCAKVCPVLAVSM----EEGENGKKKAVVNKE 327


>gi|288931037|ref|YP_003435097.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
 gi|288893285|gb|ADC64822.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
          Length = 354

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 34/88 (38%), Gaps = 11/88 (12%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +  +    F  +     Y    E CI C+ C   CP  A+ IE G            
Sbjct: 91  CPRDAITVRKIFDKDKIRHGYIRISEGCIECRNCVMFCPVDAVRIERGSPA--------- 141

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPN 123
             I+  KCIYC +C+  CP + I    +
Sbjct: 142 --INEDKCIYCEICEYVCPKNVIEIHCD 167



 Score = 41.6 bits (96), Expect = 0.034,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C+ C +C   C   A+ I++            + +I    C+YCG+CQ  CP DAI  
Sbjct: 41  DTCVNCGICAVYCQYGALNIDAPFTRLLEKVHYSKVNI--EGCVYCGVCQANCPRDAITV 98

Query: 121 GPNFE 125
              F+
Sbjct: 99  RKIFD 103



 Score = 41.2 bits (95), Expect = 0.048,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 10/83 (12%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
           +E     P  R            + CI+C +CE++C              D      R D
Sbjct: 277 YEDIHLPPERRYYKEKEHIVRISDACISCGICESLC----------KVASDNAFSINRGD 326

Query: 98  IDMIKCIYCGLCQEACPVDAIVE 120
           I    C  CG+CQ  CP++AI  
Sbjct: 327 IKPENCTSCGVCQANCPMEAITI 349



 Score = 38.5 bits (88), Expect = 0.32,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 28/66 (42%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E++CI C++CE +CP   I I                      C  CG+C+E C  +AI
Sbjct: 143 NEDKCIYCEICEYVCPKNVIEIHCDSCKMQRDYAITGEIKISEACSTCGICREVCSFEAI 202

Query: 119 VEGPNF 124
            E   F
Sbjct: 203 RENKLF 208



 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 3/76 (3%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
           P  R    +       E C+ C +C+A CP  AIT+    +  D  +    Y      CI
Sbjct: 63  PFTRLLEKVHYSKVNIEGCVYCGVCQANCPRDAITV---RKIFDKDKIRHGYIRISEGCI 119

Query: 105 YCGLCQEACPVDAIVE 120
            C  C   CPVDA+  
Sbjct: 120 ECRNCVMFCPVDAVRI 135


>gi|294866647|ref|XP_002764792.1| pyruvate-flavodoxin oxidoreductase, putative [Perkinsus marinus
           ATCC 50983]
 gi|294941089|ref|XP_002783007.1| pyruvate-flavodoxin oxidoreductase, putative [Perkinsus marinus
           ATCC 50983]
 gi|239864539|gb|EEQ97509.1| pyruvate-flavodoxin oxidoreductase, putative [Perkinsus marinus
           ATCC 50983]
 gi|239895189|gb|EER14803.1| pyruvate-flavodoxin oxidoreductase, putative [Perkinsus marinus
           ATCC 50983]
          Length = 1850

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 40/111 (36%), Gaps = 19/111 (17%)

Query: 59  GEERCIACKLCEAICPAQA-----------------ITIESGPRCHDGTRRTVRYDID-- 99
             ++C  C  C AICP                     T  + P         + + I   
Sbjct: 767 DMDKCTQCNKCSAICPHGVIRPFLASPQELANATTPHTFLTKPATGGNQVSGLAFRIQAS 826

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWES 150
            + C  C +C  ACP +A++  P  +   E  +  +     L + GDR++S
Sbjct: 827 PLDCTGCEVCVNACPDNALMMKPLPDALAEGHKNNWDYAMTLESRGDRFDS 877


>gi|229828888|ref|ZP_04454957.1| hypothetical protein GCWU000342_00973 [Shuttleworthia satelles DSM
           14600]
 gi|229792051|gb|EEP28165.1| hypothetical protein GCWU000342_00973 [Shuttleworthia satelles DSM
           14600]
          Length = 1176

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/123 (21%), Positives = 36/123 (29%), Gaps = 20/123 (16%)

Query: 58  NGEERCIACKLCEAICPAQAITIES-------------GPRCHDGTRRTVRYDIDMIKCI 104
              + CI C  C  +CP  AI   +               +    T       +    C 
Sbjct: 688 WNSDNCIGCGFCSYVCPHAAIRTIALTDDEVANAPEGFAAKDLRPTDYKYAVVVSAYDCT 747

Query: 105 YCGLCQEACPVD----AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDS 160
            CG C   CP      A+      E   E +   Y+D    L   D    +   N V  S
Sbjct: 748 GCGSCANVCPGMKGNKALTMQNFEENEGEQK---YFDYAVELPVKDDVVEKFKPNTVKGS 804

Query: 161 PYR 163
            Y+
Sbjct: 805 QYK 807


>gi|226952541|ref|ZP_03823005.1| electron transport complex, RnfABCDGE type, B subunit
           [Acinetobacter sp. ATCC 27244]
 gi|226836723|gb|EEH69106.1| electron transport complex, RnfABCDGE type, B subunit
           [Acinetobacter sp. ATCC 27244]
          Length = 267

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 27/75 (36%), Gaps = 10/75 (13%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G     +    E+ CI C  C + CP  AI               + + I    C  C L
Sbjct: 82  GRPQRMKAIIREDECIGCTKCISACPVDAIIGSGK----------LMHSILTDLCTGCEL 131

Query: 109 CQEACPVDAIVEGPN 123
           C   CPVD I   P+
Sbjct: 132 CIPPCPVDCIDLIPD 146



 Score = 37.4 bits (85), Expect = 0.76,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 18/35 (51%)

Query: 84  PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               DG  + ++  I   +CI C  C  ACPVDAI
Sbjct: 77  EIQADGRPQRMKAIIREDECIGCTKCISACPVDAI 111


>gi|254283963|ref|ZP_04958931.1| iron-sulfur cluster-binding protein [gamma proteobacterium NOR51-B]
 gi|219680166|gb|EED36515.1| iron-sulfur cluster-binding protein [gamma proteobacterium NOR51-B]
          Length = 332

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 20/59 (33%), Gaps = 12/59 (20%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI-------YCGLCQEACP 114
           C  C+ CE  CP  AI  E                +D  KCI        CG C   CP
Sbjct: 254 CYGCRACENACPPDAIFQEKKTVRGTEKWY-----VDFDKCIPFFAESYGCGACIAVCP 307


>gi|254425541|ref|ZP_05039258.1| 2Fe-2S iron-sulfur cluster binding domain protein [Synechococcus
           sp. PCC 7335]
 gi|196187964|gb|EDX82929.1| 2Fe-2S iron-sulfur cluster binding domain protein [Synechococcus
           sp. PCC 7335]
          Length = 238

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 10/87 (11%)

Query: 59  GEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLCQEACP 114
              RC+ C  C   C     A T +   R       +           C  CG C  ACP
Sbjct: 144 DHNRCVLCTRCIRACDELEGAHTWDMAGRGRTSHIISDLAQPWGTSDSCTACGKCVNACP 203

Query: 115 VDAIVEGPNFEFATETRQELYYDKERL 141
             A+           T  E+ +++++L
Sbjct: 204 TGALFTR------GSTAAEMVHNRDQL 224


>gi|114566900|ref|YP_754054.1| pyruvate synthase subunit porD [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337835|gb|ABI68683.1| pyruvate ferredoxin oxidoreductase, delta subunit [Syntrophomonas
           wolfei subsp. wolfei str. Goettingen]
          Length = 102

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 10/62 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            EE C  C LC   CP  AI ++ G R           D D + C  CG+C+  CP  AI
Sbjct: 44  HEEACKHCMLCIPFCPDSAIPVKDGKRL----------DFDYMHCKGCGICENVCPFPAI 93

Query: 119 VE 120
             
Sbjct: 94  TM 95


>gi|119355980|ref|YP_910624.1| putative glutamate synthase (NADPH) small subunit [Chlorobium
           phaeobacteroides DSM 266]
 gi|119353329|gb|ABL64200.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Chlorobium
           phaeobacteroides DSM 266]
          Length = 578

 Score = 45.5 bits (106), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 6/59 (10%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           C  CK C + CP +A+                    D  KC+ C +C   CP   I  G
Sbjct: 521 CFDCKQCVSFCPQEAVKRFRDNPPG------EVVYTDYSKCVGCHICSLVCPSGYIQMG 573


>gi|332799542|ref|YP_004461041.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Tepidanaerobacter sp. Re1]
 gi|332697277|gb|AEE91734.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Tepidanaerobacter sp. Re1]
          Length = 170

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 25/57 (43%), Gaps = 8/57 (14%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           I C  CE  CP  AIT+        G   T    +D  KCI CG C  ACP  AI  
Sbjct: 44  IPCNPCEEACPYGAITV--------GKPITNLPTLDEDKCIGCGTCIAACPGLAIFL 92


>gi|323699739|ref|ZP_08111651.1| cobyrinic acid ac-diamide synthase [Desulfovibrio sp. ND132]
 gi|323459671|gb|EGB15536.1| cobyrinic acid ac-diamide synthase [Desulfovibrio desulfuricans
           ND132]
          Length = 292

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 11/62 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ERCI C  C  +C   A+  +              Y ++ + C  C +C   CP  AI
Sbjct: 64  DPERCIGCGQCAELCRFDAVREDGD-----------VYRVNSLACEGCKVCVALCPEKAI 112

Query: 119 VE 120
             
Sbjct: 113 DF 114



 Score = 33.9 bits (76), Expect = 6.9,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPN 123
           ID  +CI CG C E C  DA+ E  +
Sbjct: 63  IDPERCIGCGQCAELCRFDAVREDGD 88


>gi|315452560|ref|YP_004072830.1| iron-sulfur cluster-binding domain-containing protein [Helicobacter
           felis ATCC 49179]
 gi|315131612|emb|CBY82240.1| iron-sulfur cluster-binding domain protein [Helicobacter felis ATCC
           49179]
          Length = 468

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 31/90 (34%), Gaps = 5/90 (5%)

Query: 28  FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT---IESGP 84
           F    T   P ++GS    F     + +Y      C  C  C  +CP QAI+    +   
Sbjct: 78  FDFDHTKYTPTQEGSLIEFFNYNKEICQYHQRRVEC--CGKCSEVCPTQAISKLDPQIAR 135

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                        ID   CI CG C   CP
Sbjct: 136 EKDLECEDNRHLVIDHQSCIDCGKCIAVCP 165



 Score = 34.3 bits (77), Expect = 6.0,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 9/66 (13%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           GE     +   ++ C  C  C   C   A++++       G   T+ ++     C  CG 
Sbjct: 323 GEFIRYGHIEIKDNCTLCLSCVGACNTGALSVD-------GNAYTLLFN--PSLCTTCGY 373

Query: 109 CQEACP 114
           C+  CP
Sbjct: 374 CEATCP 379


>gi|313672863|ref|YP_004050974.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939619|gb|ADR18811.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 1185

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/104 (18%), Positives = 30/104 (28%), Gaps = 24/104 (23%)

Query: 57  PNGEERCIACKLCEAICPAQAITIE----------------SGPRCHDGTRRTVRYDIDM 100
               E CI C +C  +CP   I ++                +  R  +         + +
Sbjct: 691 EWDPEICIQCGICSFVCPHATIRMKIYEPDVLKNVPSTFKSADARGKEFAGMKCTIQVAV 750

Query: 101 IKCIYCGLCQEACPV--------DAIVEGPNFEFATETRQELYY 136
             C  CG C   CP          AI   P      + R+   +
Sbjct: 751 EDCTGCGACVYNCPAKSKADPTRKAINMVPQVPLREKERENFNF 794


>gi|307354606|ref|YP_003895657.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanoplanus petrolearius DSM 11571]
 gi|307157839|gb|ADN37219.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanoplanus
           petrolearius DSM 11571]
          Length = 136

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 25/75 (33%), Gaps = 6/75 (8%)

Query: 57  PNGEERCIACKLCEAICPAQA------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
                 C  C  C   CP  A        + +         + +  D +   C  CG+C 
Sbjct: 6   HVNMNNCTGCNNCVVACPVDALELSTVDPVTTDKIYKVIGGKAIVLDANSELCAGCGICI 65

Query: 111 EACPVDAIVEGPNFE 125
           EACP D I     F+
Sbjct: 66  EACPYDVITLKGRFD 80


>gi|308069431|ref|YP_003871036.1| Iron-sulfur protein [Paenibacillus polymyxa E681]
 gi|305858710|gb|ADM70498.1| Iron-sulfur protein [Paenibacillus polymyxa E681]
          Length = 216

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 13/65 (20%)

Query: 62  RCIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           +C  C+   C   CP QAI  E G              ID  +CI C  C  ACP  AI 
Sbjct: 91  QCRHCENAPCAHACPVQAIRQEDG-----------VVMIDEERCIGCTSCVLACPFGAIE 139

Query: 120 EGPNF 124
             P +
Sbjct: 140 VSPVY 144



 Score = 35.1 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 27/84 (32%), Gaps = 11/84 (13%)

Query: 59  GEERCIACKLCEAICPA--------QAITIESGPRCHDGTRRTVRYDID-MIKCIYCGL- 108
              +CI CK CE  C A         A                   D+   ++C +C   
Sbjct: 39  DAGQCIGCKACELACFAVHSQPNGIGASVGTVSVPVVPKVYVVRTGDMYVPVQCRHCENA 98

Query: 109 -CQEACPVDAIVEGPNFEFATETR 131
            C  ACPV AI +        E R
Sbjct: 99  PCAHACPVQAIRQEDGVVMIDEER 122


>gi|317057597|ref|YP_004106064.1| hydrogenase, Fe-only [Ruminococcus albus 7]
 gi|315449866|gb|ADU23430.1| hydrogenase, Fe-only [Ruminococcus albus 7]
          Length = 580

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 9/86 (10%)

Query: 59  GEERCIACKLCEAIC-PAQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115
              +CI C  C A C   Q++++    R          +D+ +    C+ CG C  +CPV
Sbjct: 144 DNNKCIQCMRCVAACKNVQSVSVIGNIRRGFNVHVGSAFDMPLASTACVGCGQCIVSCPV 203

Query: 116 DAIVEGPNFEFATETR-QELYYDKER 140
            A+      E ++E +  +   D E+
Sbjct: 204 GALT-----EKSSEKKVWDAIADPEK 224


>gi|295402305|ref|ZP_06812261.1| dihydroorotate dehydrogenase family protein [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294975698|gb|EFG51320.1| dihydroorotate dehydrogenase family protein [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 427

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 22/71 (30%), Gaps = 4/71 (5%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
           H        ++ CI C  C   C   +          +G             C+ C LC 
Sbjct: 330 HYKVVARINKDVCINCNKCYISCEDASHQCIDRLTDENGKEYLKV---REEDCVGCNLCS 386

Query: 111 EACPVD-AIVE 120
             CPVD AI  
Sbjct: 387 IVCPVDGAIDM 397


>gi|289191855|ref|YP_003457796.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
 gi|288938305|gb|ADC69060.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
          Length = 167

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 63  CIACKLCEAICPAQAITIESGP--RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           CI C+ C  +CP +AI +      +  +   +     I+  KCIYC  C + CPV ++ 
Sbjct: 57  CIGCEGCANVCPTKAIEMIPIEPVKITENYVKDKIPKINPEKCIYCLYCHDFCPVFSVF 115



 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/33 (27%), Positives = 12/33 (36%)

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +  +   +    CI C  C   CP  AI   P 
Sbjct: 45  KVKIPKTVIEELCIGCEGCANVCPTKAIEMIPI 77


>gi|262381167|ref|ZP_06074305.1| ferredoxin [Bacteroides sp. 2_1_33B]
 gi|262296344|gb|EEY84274.1| ferredoxin [Bacteroides sp. 2_1_33B]
          Length = 310

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 29/97 (29%), Gaps = 16/97 (16%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P  +         +            CI C  C   CP +AIT+ +              
Sbjct: 193 PKSRRIYVSCVNKDKGAAARKACANACIGCGKCAKECPFEAITVTNN-----------VA 241

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
            ID  KC  C  C   CP  AI      E     R+E
Sbjct: 242 YIDYTKCRLCRKCVAVCPTGAI-----HELNFPPRKE 273



 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 28/81 (34%), Gaps = 8/81 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCH--------DGTRRTVRYDIDMIKCIYCGLCQ 110
            EE+C +C  C   CP   I +               +  +           CI CG C 
Sbjct: 167 DEEKCTSCGACVKACPKSIIELRKKGPKSRRIYVSCVNKDKGAAARKACANACIGCGKCA 226

Query: 111 EACPVDAIVEGPNFEFATETR 131
           + CP +AI    N  +   T+
Sbjct: 227 KECPFEAITVTNNVAYIDYTK 247



 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 22/65 (33%), Gaps = 9/65 (13%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           N    C+    C   C   AI I            T   ++D  KC  CG C +ACP   
Sbjct: 135 NCSFGCLGYGDCVNACAFDAIHINPA---------TGIAEVDEEKCTSCGACVKACPKSI 185

Query: 118 IVEGP 122
           I    
Sbjct: 186 IELRK 190


>gi|148643396|ref|YP_001273909.1| heterodisulfide reductase, subunit A, HdrA [Methanobrevibacter
           smithii ATCC 35061]
 gi|148552413|gb|ABQ87541.1| heterodisulfide reductase, subunit A, HdrA [Methanobrevibacter
           smithii ATCC 35061]
          Length = 662

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 7/66 (10%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              +  C AC++C  +CP  AI+I                +I+   C  CG C  ACP  
Sbjct: 585 CTDDVICGACEVCVELCPYGAISITGDDNAAHA-------EINAALCKGCGTCVGACPSG 637

Query: 117 AIVEGP 122
           A+ +  
Sbjct: 638 AMDQQH 643



 Score = 37.0 bits (84), Expect = 0.88,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 23/82 (28%), Gaps = 7/82 (8%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR-------CHDGTRRTVRYDI 98
            F      +     EE C  C  C   CP +                        +   I
Sbjct: 237 NFHVTVGKKARYVIEEDCTGCGSCVEACPIEIPNYYDEGVGMVKAAYIPFPQAVPLCATI 296

Query: 99  DMIKCIYCGLCQEACPVDAIVE 120
           D   CI C LC +AC   AI  
Sbjct: 297 DKDYCIECMLCDQACERGAIDH 318


>gi|118467237|ref|YP_884190.1| NADPH-ferredoxin reductase fpra [Mycobacterium avium 104]
 gi|118168524|gb|ABK69421.1| NADPH-ferredoxin reductase fpra [Mycobacterium avium 104]
          Length = 511

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 2/33 (6%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
           ID   C+ CG C E CPVDAI      E   E 
Sbjct: 14  IDPQACVDCGACVEVCPVDAIR--HEDELTDEQ 44


>gi|145589292|ref|YP_001155889.1| formate dehydrogenase, alpha subunit [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047698|gb|ABP34325.1| NAD-dependent formate dehydrogenase catalytic subunit /
           NAD-dependent formate dehydrogenase iron-sulfur protein
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 963

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 5/65 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114
             + CI C  C   C  +    +       G    + +D    +    C+ CG C +ACP
Sbjct: 165 NLDACIQCNRCVRACREE-QVNDVIGYAMRGGHSEIVFDLNDPMGESTCVACGECVQACP 223

Query: 115 VDAIV 119
             A++
Sbjct: 224 TGALM 228


>gi|85860137|ref|YP_462339.1| ferridoxin [Syntrophus aciditrophicus SB]
 gi|85723228|gb|ABC78171.1| ferridoxin [Syntrophus aciditrophicus SB]
          Length = 137

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 9/60 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++C+ C  C A CP  A+ ++         R T++   D   C  CG+C  ACP  A+
Sbjct: 81  NTDKCVHCGACTAFCPTDALHMD---------RETMKVVFDPELCNGCGICVTACPARAM 131



 Score = 35.5 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 9/32 (28%), Positives = 13/32 (40%)

Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
            KC++CG C   CP DA+             +
Sbjct: 83  DKCVHCGACTAFCPTDALHMDRETMKVVFDPE 114


>gi|317487472|ref|ZP_07946258.1| indolepyruvate ferredoxin oxidoreductase [Bilophila wadsworthia
           3_1_6]
 gi|316921261|gb|EFV42561.1| indolepyruvate ferredoxin oxidoreductase [Bilophila wadsworthia
           3_1_6]
          Length = 591

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++CIAC  C     +   ++      H  T +     I+ + C+ CG+C + CPV AI
Sbjct: 530 DADKCIACGKC---IQSGCPSVVLSDAVHPKTGKRKA-RIEPVTCVGCGVCSQICPVQAI 585


>gi|319794409|ref|YP_004156049.1| electron transport complex, rnfABCdge type, b subunit [Variovorax
           paradoxus EPS]
 gi|315596872|gb|ADU37938.1| electron transport complex, RnfABCDGE type, B subunit [Variovorax
           paradoxus EPS]
          Length = 211

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 26/79 (32%), Gaps = 10/79 (12%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
              P+F  E         E  CI C LC   CP  AI   +             + +   
Sbjct: 63  PLDPQFGTEGPRAMAVIDEAWCIGCTLCLDACPTDAIVGINK----------RMHTVVEA 112

Query: 102 KCIYCGLCQEACPVDAIVE 120
            C  C LC   CPVD I  
Sbjct: 113 HCTGCELCIPVCPVDCISL 131


>gi|313245487|emb|CBY40205.1| unnamed protein product [Oikopleura dioica]
          Length = 627

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 26/83 (31%), Gaps = 1/83 (1%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           K             R      ++C   K C   C      +  G  C + T       I 
Sbjct: 5   KPKQRDDDVQMKQTRIAIVNLDKCKP-KKCRQECKKTCPVVRMGKLCIEVTATDKSAKIY 63

Query: 100 MIKCIYCGLCQEACPVDAIVEGP 122
              CI CG+C + CP +AI    
Sbjct: 64  ETLCIGCGICVKKCPFEAIQIIN 86


>gi|298377596|ref|ZP_06987548.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           sp. 3_1_19]
 gi|298265615|gb|EFI07276.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           sp. 3_1_19]
          Length = 310

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 29/97 (29%), Gaps = 16/97 (16%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P  +         +            CI C  C   CP +AIT+ +              
Sbjct: 193 PKSRRIYVSCVNKDKGAAARKACANACIGCGKCAKECPFEAITVTNN-----------VA 241

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
            ID  KC  C  C   CP  AI      E     R+E
Sbjct: 242 YIDYTKCRLCRKCVAVCPTGAI-----HELNFPPRKE 273



 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 28/81 (34%), Gaps = 8/81 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCH--------DGTRRTVRYDIDMIKCIYCGLCQ 110
            EE+C +C  C   CP   I +               +  +           CI CG C 
Sbjct: 167 DEEKCTSCGACVKACPKNIIELRKKGPKSRRIYVSCVNKDKGAAARKACANACIGCGKCA 226

Query: 111 EACPVDAIVEGPNFEFATETR 131
           + CP +AI    N  +   T+
Sbjct: 227 KECPFEAITVTNNVAYIDYTK 247



 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 9/65 (13%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           N    C+    C   C   AI I            T   ++D  KC  CG C +ACP + 
Sbjct: 135 NCSFGCLGYGDCVNACAFDAIHINPA---------TGIAEVDEEKCTSCGACVKACPKNI 185

Query: 118 IVEGP 122
           I    
Sbjct: 186 IELRK 190


>gi|294649835|ref|ZP_06727237.1| NADH:ubiquinone oxidoreductase, subunit RnfB [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292824318|gb|EFF83119.1| NADH:ubiquinone oxidoreductase, subunit RnfB [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 267

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 27/75 (36%), Gaps = 10/75 (13%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G     +    E+ CI C  C + CP  AI               + + I    C  C L
Sbjct: 82  GRPQRMKAIIREDECIGCTKCISACPVDAIIGSGK----------LMHSILTDLCTGCEL 131

Query: 109 CQEACPVDAIVEGPN 123
           C   CPVD I   P+
Sbjct: 132 CIPPCPVDCIDLIPD 146



 Score = 37.0 bits (84), Expect = 0.77,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 18/35 (51%)

Query: 84  PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               DG  + ++  I   +CI C  C  ACPVDAI
Sbjct: 77  EIQADGRPQRMKAIIREDECIGCTKCISACPVDAI 111


>gi|260892291|ref|YP_003238388.1| ferredoxin-dependent glutamate synthase [Ammonifex degensii KC4]
 gi|260864432|gb|ACX51538.1| ferredoxin-dependent glutamate synthase [Ammonifex degensii KC4]
          Length = 548

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 19/104 (18%)

Query: 41  GSTSPRFRGEHALRRY-PNGEERCIACKLCEAICPAQAITI-------------ESGPRC 86
           G+ +P   G   LR      +++C  C  C A+CP +AI +             ++  + 
Sbjct: 5   GTLTPSSLGLKDLRWLIYWDKDKCALCGRCTAVCPVKAIELGVHRQRVVFSPLLDAPAKE 64

Query: 87  HDGTRRTVRYDIDM-----IKCIYCGLCQEACPVDAIVEGPNFE 125
                  V Y I         CI CG+C + CP  AI+   N E
Sbjct: 65  ASSGLYRVYYGIRQRTEPAHACIGCGMCAQVCPNGAILPYRNDE 108


>gi|254567736|ref|XP_002490978.1| Essential iron-sulfur protein required for ribosome biogenesis and
           translation initiation [Pichia pastoris GS115]
 gi|238030775|emb|CAY68698.1| Essential iron-sulfur protein required for ribosome biogenesis and
           translation initiation [Pichia pastoris GS115]
 gi|328352489|emb|CCA38888.1| Translation initiation factor RLI1 [Pichia pastoris CBS 7435]
          Length = 606

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 22/56 (39%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           K C   C      +++G  C +    +    I    CI CG+C + CP  AI    
Sbjct: 19  KKCRQECRKSCPVVKTGKLCIEVEAYSKIAFISETLCIGCGICVKKCPFGAINIIN 74


>gi|291287299|ref|YP_003504115.1| Cobyrinic acid ac-diamide synthase [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884459|gb|ADD68159.1| Cobyrinic acid ac-diamide synthase [Denitrovibrio acetiphilus DSM
           12809]
          Length = 292

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 9/60 (15%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E C  C +C   C   A+      R         ++ I+   C  CGLC   CP  AI  
Sbjct: 66  EYCTGCGICYRHCRFDAVERVDMSR---------KFVINEFSCEGCGLCVRLCPAGAISF 116


>gi|223984301|ref|ZP_03634445.1| hypothetical protein HOLDEFILI_01739 [Holdemania filiformis DSM
           12042]
 gi|223963734|gb|EEF68102.1| hypothetical protein HOLDEFILI_01739 [Holdemania filiformis DSM
           12042]
          Length = 384

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 10/65 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E+C +C +C+ IC   A+  +   + H          ID  +C+ CG C   C  DAI
Sbjct: 208 NPEQCRSCGMCQKICAHSALNFDENHKMH----------IDHSRCVGCGRCIGMCNFDAI 257

Query: 119 VEGPN 123
               +
Sbjct: 258 EPMND 262


>gi|194335813|ref|YP_002017607.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Pelodictyon phaeoclathratiforme BU-1]
 gi|194308290|gb|ACF42990.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Pelodictyon phaeoclathratiforme BU-1]
          Length = 1178

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/98 (17%), Positives = 25/98 (25%), Gaps = 24/98 (24%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA--------------- 77
           T    FEK + +                + CI C  C  +CP  A               
Sbjct: 665 TGTSKFEKRNLADEIPVW--------ESDICIQCAKCAIVCPHAAIRAKVYDPKYLDNAP 716

Query: 78  -ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                +  +  +         I    C  C +C   CP
Sbjct: 717 RTFKSTEAKGANWEGMKYTIQIAPEDCTGCEICIHVCP 754


>gi|150007171|ref|YP_001301914.1| ferredoxin [Parabacteroides distasonis ATCC 8503]
 gi|255015215|ref|ZP_05287341.1| ferredoxin [Bacteroides sp. 2_1_7]
 gi|256840546|ref|ZP_05546054.1| ferredoxin [Parabacteroides sp. D13]
 gi|149935595|gb|ABR42292.1| electron transport complex protein RnfB [Parabacteroides distasonis
           ATCC 8503]
 gi|256737818|gb|EEU51144.1| ferredoxin [Parabacteroides sp. D13]
          Length = 310

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 29/97 (29%), Gaps = 16/97 (16%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P  +         +            CI C  C   CP +AIT+ +              
Sbjct: 193 PKSRRIYVSCVNKDKGAAARKACANACIGCGKCAKECPFEAITVTNN-----------VA 241

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
            ID  KC  C  C   CP  AI      E     R+E
Sbjct: 242 YIDYTKCRLCRKCVAVCPTGAI-----HELNFPPRKE 273



 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 28/81 (34%), Gaps = 8/81 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCH--------DGTRRTVRYDIDMIKCIYCGLCQ 110
            EE+C +C  C   CP   I +               +  +           CI CG C 
Sbjct: 167 DEEKCTSCGACVKACPKNIIELRKKGPKSRRIYVSCVNKDKGAAARKACANACIGCGKCA 226

Query: 111 EACPVDAIVEGPNFEFATETR 131
           + CP +AI    N  +   T+
Sbjct: 227 KECPFEAITVTNNVAYIDYTK 247



 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 9/65 (13%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           N    C+    C   C   AI I            T   ++D  KC  CG C +ACP + 
Sbjct: 135 NCSFGCLGYGDCVNACAFDAIHINPA---------TGIAEVDEEKCTSCGACVKACPKNI 185

Query: 118 IVEGP 122
           I    
Sbjct: 186 IELRK 190


>gi|153808573|ref|ZP_01961241.1| hypothetical protein BACCAC_02869 [Bacteroides caccae ATCC 43185]
 gi|149128895|gb|EDM20112.1| hypothetical protein BACCAC_02869 [Bacteroides caccae ATCC 43185]
          Length = 343

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 22/64 (34%), Gaps = 12/64 (18%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
             +   E  C  C LC   CPA AIT                      KCI C  C + C
Sbjct: 267 TPWVKDESLCTHCGLCVVHCPAGAITKGDELNVD------------ETKCIKCCACVKVC 314

Query: 114 PVDA 117
           P +A
Sbjct: 315 PRNA 318



 Score = 35.1 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 14/30 (46%)

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
             +  D   C +CGLC   CP  AI +G  
Sbjct: 267 TPWVKDESLCTHCGLCVVHCPAGAITKGDE 296


>gi|147676920|ref|YP_001211135.1| MinD family ATPase [Pelotomaculum thermopropionicum SI]
 gi|146273017|dbj|BAF58766.1| MinD superfamily P-loop ATPase [Pelotomaculum thermopropionicum SI]
          Length = 291

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 8/63 (12%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            +RC  C +C  +C   AI      R          Y +D I C  CG+C   CP  AI 
Sbjct: 64  PDRCSGCGMCFELCRFGAIIKNGSYRPA--------YAVDRISCEGCGVCSHFCPEKAIE 115

Query: 120 EGP 122
             P
Sbjct: 116 FSP 118


>gi|326386804|ref|ZP_08208424.1| formate dehydrogenase, alpha subunit [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208723|gb|EGD59520.1| formate dehydrogenase, alpha subunit [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 947

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 28/81 (34%), Gaps = 4/81 (4%)

Query: 55  RYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            +     +CI C  C   C       A+TIE        +      D    +C+ CG C 
Sbjct: 159 YFDFDPSKCIVCSRCVRACEEVQGTFALTIEGRGFGSKVSAGQRGDDFLGSECVSCGACV 218

Query: 111 EACPVDAIVEGPNFEFATETR 131
           +ACP   + E    E     R
Sbjct: 219 QACPTATLNEKAVKEIGKPER 239


>gi|315925914|ref|ZP_07922119.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315620735|gb|EFV00711.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 222

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 11/68 (16%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             L       E CI C+ C  +CP   I   S P             ID  +C++CG C 
Sbjct: 142 PELISGFFVGEGCIGCRNCSVVCPQSCIDSSSIPAV-----------IDQNRCLHCGRCA 190

Query: 111 EACPVDAI 118
           EACPV  I
Sbjct: 191 EACPVGVI 198


>gi|303249174|ref|ZP_07335413.1| Cobyrinic acid ac-diamide synthase [Desulfovibrio fructosovorans
           JJ]
 gi|302489447|gb|EFL49395.1| Cobyrinic acid ac-diamide synthase [Desulfovibrio fructosovorans
           JJ]
          Length = 296

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 19/60 (31%), Gaps = 11/60 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E C  C  C  IC   AITI                 +    C  CG C   CP  AI
Sbjct: 67  DVELCTRCGACREICQFAAITILGD-----------TPVVFDEMCHGCGACAAVCPFGAI 115


>gi|124027610|ref|YP_001012930.1| ketoisovalerate oxidoreductase subunit vorD [Hyperthermus butylicus
           DSM 5456]
 gi|123978304|gb|ABM80585.1| Ketoisovalerate oxidoreductase subunit vorD [Hyperthermus butylicus
           DSM 5456]
          Length = 71

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 19/57 (33%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
             +C               G R      ID   C  CG+C + CPV AI      EF
Sbjct: 7   CYMCWLYCPEHVIEMAAGRGPRGQDIPVIDYEYCKGCGVCAQVCPVKAISMVSEEEF 63


>gi|77919429|ref|YP_357244.1| ferredoxin 2 [Pelobacter carbinolicus DSM 2380]
 gi|77545512|gb|ABA89074.1| ferredoxin 2 [Pelobacter carbinolicus DSM 2380]
          Length = 583

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 30/88 (34%), Gaps = 21/88 (23%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             C  C  C   CP +AI +  G              I   KC+ CG C   CP +A   
Sbjct: 16  TECQDCSKCVRYCPVKAIKVADGQA-----------RIVPEKCVACGTCVRVCPANA--- 61

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRW 148
                     R +L   K  LL++   +
Sbjct: 62  -------KRVRDDLDPTKRMLLSSDRVY 82


>gi|78222965|ref|YP_384712.1| glutamate synthase (NADPH) GltB2 subunit [Geobacter metallireducens
           GS-15]
 gi|78194220|gb|ABB31987.1| glutamate synthase (NADPH) GltB2 subunit [Geobacter metallireducens
           GS-15]
          Length = 509

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 22/71 (30%), Gaps = 11/71 (15%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI CK+C   C  +    E+                    CI C  C   CP  AI    
Sbjct: 22  CIRCKVCVRQCAYEVHAYEAKADALTEDN---------TLCIGCRRCSALCPTGAITIRS 72

Query: 123 NFEFATETRQE 133
           N E     R E
Sbjct: 73  NEE--VFKRNE 81


>gi|294867467|ref|XP_002765113.1| pyruvate:ferredoxin oxidoreductase/NADPH-cytochrome P450, putative
           [Perkinsus marinus ATCC 50983]
 gi|239865035|gb|EEQ97830.1| pyruvate:ferredoxin oxidoreductase/NADPH-cytochrome P450, putative
           [Perkinsus marinus ATCC 50983]
          Length = 1829

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 30/104 (28%), Gaps = 27/104 (25%)

Query: 51  HALRRYPNGEERCIACKLCEAICPA-------------QAITIESGPRCHDGTRR----T 93
            AL       ++C  C  C   CP               A       R   G        
Sbjct: 737 VALMIPMVDMDKCTQCNTCSMACPHAVIRPFLLSQAEDDAKPSTFETRKAKGGAEVAGLH 796

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVE----------GPNFEFA 127
            R  +  + C  C +C  ACP DA+              N+E+A
Sbjct: 797 YRIQLSPLDCTGCEVCVHACPDDALTMKSFIDFKDDQSQNWEYA 840


>gi|218885366|ref|YP_002434687.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218756320|gb|ACL07219.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 147

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 9/61 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ C+ C +C AICP  A+ ++   R     +          +C  CGLC   CPV A+
Sbjct: 88  DEDSCMHCGMCTAICPTSALAMDIEARVVVFDK---------DRCTACGLCTRVCPVGAM 138

Query: 119 V 119
            
Sbjct: 139 N 139



 Score = 33.9 bits (76), Expect = 6.6,   Method: Composition-based stats.
 Identities = 7/33 (21%), Positives = 12/33 (36%)

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
              C++CG+C   CP  A+            + 
Sbjct: 89  EDSCMHCGMCTAICPTSALAMDIEARVVVFDKD 121


>gi|158634532|gb|ABW76118.1| Fe-hydrogenase 3 [Trimastix pyriformis]
          Length = 445

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 6/66 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV------RYDIDMIKCIYCGLCQEA 112
             + C+ C  C+ +CP  AI   + P         +        +ID  KCI+CG CQ  
Sbjct: 149 DPDLCVRCGACQKVCPYHAIVKLAVPCEEACPVGAIAKGPSGHAEIDWEKCIHCGQCQLH 208

Query: 113 CPVDAI 118
           CP  ++
Sbjct: 209 CPFSSV 214



 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 5/63 (7%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTV-----RYDIDMIKCIYCGLCQEACPV 115
           E C  C               + P      ++ +     +  ID   C+ CG CQ+ CP 
Sbjct: 106 ESCRNCTPAAYFVTNACQGCVARPCMSTCPKKAISRVDGQAKIDPDLCVRCGACQKVCPY 165

Query: 116 DAI 118
            AI
Sbjct: 166 HAI 168


>gi|160934810|ref|ZP_02082196.1| hypothetical protein CLOLEP_03685 [Clostridium leptum DSM 753]
 gi|156866263|gb|EDO59635.1| hypothetical protein CLOLEP_03685 [Clostridium leptum DSM 753]
          Length = 206

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 28/84 (33%), Gaps = 13/84 (15%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
             P E+   S  F               C  C  CE +CP   I + S P          
Sbjct: 133 KTPIER--FSFTFGKMKVEAGGYFITTGCTGCGDCETVCPQSCIDLISVPAV-------- 182

Query: 95  RYDIDMIKCIYCGLCQEACPVDAI 118
              I    C++CG C E CP  AI
Sbjct: 183 ---IKQAHCLHCGNCYEICPAKAI 203


>gi|118580644|ref|YP_901894.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pelobacter propionicus DSM 2379]
 gi|118503354|gb|ABK99836.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pelobacter
           propionicus DSM 2379]
          Length = 56

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 11/64 (17%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
              +  + CI C  C+  CP  AI+ + G R            ID   CI CG C + CP
Sbjct: 1   MAHSINDDCINCGACDDSCPVNAISEQDGKRV-----------IDADTCIDCGACVDTCP 49

Query: 115 VDAI 118
           V+AI
Sbjct: 50  VNAI 53


>gi|221065418|ref|ZP_03541523.1| formate dehydrogenase, alpha subunit [Comamonas testosteroni KF-1]
 gi|220710441|gb|EED65809.1| formate dehydrogenase, alpha subunit [Comamonas testosteroni KF-1]
          Length = 976

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 23/82 (28%), Gaps = 3/82 (3%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     SG                   C+ CG C +
Sbjct: 164 YFSYDPSKCIVCNRCVRACEETQGTFALTISGRGFESRITAGQGDGFMASDCVSCGACVQ 223

Query: 112 ACPVDAIVEGPNFEFATETRQE 133
           ACP   + E    E       E
Sbjct: 224 ACPTATLQEKTVVELGQSEHSE 245


>gi|114330660|ref|YP_746882.1| electron transport complex, RnfABCDGE type, B subunit [Nitrosomonas
           eutropha C91]
 gi|114307674|gb|ABI58917.1| electron transport complex, RnfABCDGE type, B subunit [Nitrosomonas
           eutropha C91]
          Length = 218

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 33/100 (33%), Gaps = 12/100 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E +CI C  C   CP  AI   +             + +    C  C  C   CPVD I
Sbjct: 83  DEAQCIGCTFCLRACPVDAIIGAAK----------CMHTVLTALCTGCERCIAPCPVDCI 132

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158
              P  E AT   ++   D  R        +  + RN   
Sbjct: 133 SMVPVSEPATPEIRQQIADSAR--ERYHLRQLRLARNRQE 170



 Score = 33.9 bits (76), Expect = 7.5,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 15/30 (50%)

Query: 89  GTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +      ID  +CI C  C  ACPVDAI
Sbjct: 73  HPKPPAVAVIDEAQCIGCTFCLRACPVDAI 102


>gi|325278931|ref|YP_004251473.1| hydrogenase, Fe-only [Odoribacter splanchnicus DSM 20712]
 gi|324310740|gb|ADY31293.1| hydrogenase, Fe-only [Odoribacter splanchnicus DSM 20712]
          Length = 587

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 59  GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115
              +CI C+ CE +C   Q +           +     +D  +    C +CG C   CPV
Sbjct: 149 DMSKCIYCRRCEMMCNEVQTVGALGAVNRGFISTIAPAFDEPLSNSACTFCGQCVAVCPV 208

Query: 116 DAIVEGP 122
            A+ E  
Sbjct: 209 GALTEVD 215


>gi|319936762|ref|ZP_08011175.1| nitroreductase [Coprobacillus sp. 29_1]
 gi|319808319|gb|EFW04884.1| nitroreductase [Coprobacillus sp. 29_1]
          Length = 266

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 12/103 (11%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +E+CI C++C   CPA  I  +                I   +CI CG C   CP +A+
Sbjct: 18  NKEKCIGCQMCIKDCPAHNIEFKDKKAA-----------IIDKECIMCGHCVAICPKNAV 66

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161
           +     +      +++  +   +L N  R+   I +    + P
Sbjct: 67  IISGYTDHPIIREKDVNLNPNDIL-NTIRFRRTIRQFQKKNIP 108


>gi|291550300|emb|CBL26562.1| electron transport complex, RnfABCDGE type, B subunit [Ruminococcus
           torques L2-14]
          Length = 265

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 11/85 (12%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P+E+ +            +    +  CI C+LCE  C A AIT+ +             
Sbjct: 191 IPYEQKTFVRCNSNAKGKVQLTICQAGCIGCRLCEKNCEAGAITVTNFLAH--------- 241

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVE 120
             ID  KC  CG+C E CP   I  
Sbjct: 242 --IDADKCTECGVCVEKCPRKIITL 264



 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGP-----RCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
            +E C AC  C A CP   I +         RC+   +  V+  I    CI C LC++ C
Sbjct: 169 DKEACKACGKCIAACPKHLIELIPYEQKTFVRCNSNAKGKVQLTICQAGCIGCRLCEKNC 228

Query: 114 PVDAIVEGP 122
              AI    
Sbjct: 229 EAGAITVTN 237



 Score = 34.7 bits (78), Expect = 4.8,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 25/73 (34%), Gaps = 12/73 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C+    C A CP  AI +  G              +D   C  CG C  ACP   I
Sbjct: 140 CNSGCLGFGSCVAACPFDAIHVVDGIAV-----------VDKEACKACGKCIAACPKHLI 188

Query: 119 VEGPNFEFATETR 131
              P +E  T  R
Sbjct: 189 ELIP-YEQKTFVR 200


>gi|289597112|ref|YP_003483808.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Aciduliprofundum boonei T469]
 gi|289534899|gb|ADD09246.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Aciduliprofundum boonei T469]
          Length = 105

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 28/82 (34%), Gaps = 7/82 (8%)

Query: 49  GEHALRRYPNGEERCIACKLCEAIC-------PAQAITIESGPRCHDGTRRTVRYDIDMI 101
           G   + +     ++CI C +C   C            T    P   +  ++     ID  
Sbjct: 22  GTWRVFKPVINYDKCIRCLICWQFCPEPSILRYDDEETRMKTPAPKEALKKLPVVVIDYD 81

Query: 102 KCIYCGLCQEACPVDAIVEGPN 123
            C  CG+C   CPV AI     
Sbjct: 82  YCKGCGICYNECPVKAIDFVKE 103


>gi|317053187|ref|YP_004118954.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Pantoea sp. At-9b]
 gi|255761156|gb|ACU32755.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Pantoea sp. At-9b]
 gi|316952926|gb|ADU72398.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Pantoea sp. At-9b]
          Length = 1169

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 26/93 (27%), Gaps = 16/93 (17%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTR----------- 91
             +   AL       E C  C  C  ICP  A+      +  R                 
Sbjct: 673 WEKRGIALEVPVWQPEGCTQCNQCAFICPHAAVRPALLTTEERYFAMPELLSKPAQGATD 732

Query: 92  RTVRYDIDMIKCIYCGLCQEACPV--DAIVEGP 122
                 I  + C  CG C + CP    A+   P
Sbjct: 733 YEYHLAISPLDCSGCGNCVDICPAKGKALSMKP 765


>gi|212224628|ref|YP_002307864.1| 2-ketoisovalerate ferredoxin oxidoreductase subunit delta
           [Thermococcus onnurineus NA1]
 gi|212009585|gb|ACJ16967.1| 2-oxoisovalerate:ferredoxin oxidoreductase, delta subunit
           [Thermococcus onnurineus NA1]
          Length = 102

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 10/65 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            + +C+ C +C   CP  AI I                 ID   C  CG+C   CP  AI
Sbjct: 46  DDNKCVKCYICWKFCPEPAIYIREDGYVG----------IDYDYCKGCGICANECPTKAI 95

Query: 119 VEGPN 123
                
Sbjct: 96  TMEKE 100


>gi|270308711|ref|YP_003330769.1| reductive dehalogenase [Dehalococcoides sp. VS]
 gi|270154603|gb|ACZ62441.1| reductive dehalogenase [Dehalococcoides sp. VS]
          Length = 473

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 10/67 (14%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRT----VRYDIDMIKCIY------CGLC 109
              C  C  C  +CP+   + E  P        +      + ID  KCI       C  C
Sbjct: 340 RRFCHNCGTCAKVCPSGCQSTEKDPYWETRDTYSNAGLQTWYIDWDKCIRWGGPWDCVNC 399

Query: 110 QEACPVD 116
           Q +CP +
Sbjct: 400 QTSCPFN 406


>gi|134298021|ref|YP_001111517.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfotomaculum reducens MI-1]
 gi|134050721|gb|ABO48692.1| tungsten-dependent benzoyl-CoA reductase-related protein bamE
           [Desulfotomaculum reducens MI-1]
          Length = 1010

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              + +C+AC +C  +CPA+A T+ +  R +         DI+   C  CG C  +C   
Sbjct: 935 YVDKRKCMACGVCVEVCPAKAATLVTDERGN------TAADINPALCKGCGACSSSCRCG 988

Query: 117 AIV 119
           AI 
Sbjct: 989 AIN 991



 Score = 40.9 bits (94), Expect = 0.067,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 26/98 (26%), Gaps = 16/98 (16%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPA---QAITIESGPRCHDGTRRTVR----Y 96
              F+     +       +C  C  C   CP     A       R              Y
Sbjct: 91  PGNFKVTIRTKARYIDVNKCTGCGSCAEACPVKVDDAFNQGLNKRKAIYKLYAQAFPNAY 150

Query: 97  DIDMIKCIY---------CGLCQEACPVDAIVEGPNFE 125
            ID  KC+          CG C +AC   AI      E
Sbjct: 151 AIDSSKCLKFKNLSNDKLCGKCIKACQAGAINHHMQDE 188



 Score = 40.9 bits (94), Expect = 0.068,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 30/86 (34%), Gaps = 9/86 (10%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCI------ACKLC---EAICPAQAITIESGPRCHDG 89
           E+                 N    CI       C       ++  ++ + +E  P     
Sbjct: 37  EREPAIGGTMPMLDKTFPTNDCSMCILSPKLVDCGRHLNVNSMTNSEVVGLEGEPGNFKV 96

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPV 115
           T RT    ID+ KC  CG C EACPV
Sbjct: 97  TIRTKARYIDVNKCTGCGSCAEACPV 122


>gi|13366094|dbj|BAB39384.1| hydrogenase diaphorase small subunit [Anabaena variabilis]
          Length = 238

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 24/70 (34%), Gaps = 4/70 (5%)

Query: 54  RRYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLC 109
            R+     RC+ C  C  +C     A T +   R  +    T           C  CG C
Sbjct: 139 HRFGIDHNRCVLCTRCVRVCDEIEGAHTWDMAGRGTNSHVITDLNQPWGTSDTCTSCGKC 198

Query: 110 QEACPVDAIV 119
             ACP  AI 
Sbjct: 199 VNACPTGAIF 208


>gi|88811011|ref|ZP_01126267.1| electron transport complex protein RnfB [Nitrococcus mobilis
           Nb-231]
 gi|88791550|gb|EAR22661.1| electron transport complex protein RnfB [Nitrococcus mobilis
           Nb-231]
          Length = 277

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 10/64 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C  C   CP  AI   +             + +   +C  C LC   CPVD
Sbjct: 112 WIDETACIGCTRCIQACPVDAILGTAKQ----------MHTVIRTECTGCALCIAPCPVD 161

Query: 117 AIVE 120
            I  
Sbjct: 162 CIHL 165



 Score = 37.4 bits (85), Expect = 0.69,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 18/39 (46%)

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            P+     +      ID   CI C  C +ACPVDAI+  
Sbjct: 98  NPKHGTLPQEPTVAWIDETACIGCTRCIQACPVDAILGT 136


>gi|307266903|ref|ZP_07548422.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|326389885|ref|ZP_08211449.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoanaerobacter ethanolicus JW 200]
 gi|306918060|gb|EFN48315.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter wiegelii Rt8.B1]
 gi|325994153|gb|EGD52581.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoanaerobacter ethanolicus JW 200]
          Length = 56

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 26/64 (40%), Gaps = 11/64 (17%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + CI+C  C A CP  AI    G            Y+ID   CI CG C+  CP
Sbjct: 1   MAHYITDECISCGACAAECPVDAIHEGDGK-----------YEIDPDTCIDCGACEAVCP 49

Query: 115 VDAI 118
             AI
Sbjct: 50  TGAI 53


>gi|302831936|ref|XP_002947533.1| pyruvate-ferredoxin oxidoreductase [Volvox carteri f. nagariensis]
 gi|300267397|gb|EFJ51581.1| pyruvate-ferredoxin oxidoreductase [Volvox carteri f. nagariensis]
          Length = 1721

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/113 (19%), Positives = 34/113 (30%), Gaps = 18/113 (15%)

Query: 29   KAKTTINYPF--EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA----------- 75
            K   ++  P       T+   +   A +      E C  C +C  +CP            
Sbjct: 1183 KLPVSVFSPEGFVPPGTTVIEKRAIAAQVPVWKAENCTQCNICAFVCPHAAIRPALAQPG 1242

Query: 76   ---QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLCQEACPVDAIVEGPN 123
                A              + ++Y I      C  C LC  ACP +A+   P 
Sbjct: 1243 ELQNAPASFGSIAAKGPGLQGLKYRIQVSPYDCTGCDLCTHACPDNALEAKPI 1295


>gi|299138535|ref|ZP_07031714.1| NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding
           [Acidobacterium sp. MP5ACTX8]
 gi|298599781|gb|EFI55940.1| NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding
           [Acidobacterium sp. MP5ACTX8]
          Length = 791

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 29/87 (33%), Gaps = 9/87 (10%)

Query: 44  SPRFRGEHALRRYPN-GEERCIACKLCEAICPAQAITIESGPR--------CHDGTRRTV 94
               R E            RCI C  C  +C         G +          +   +  
Sbjct: 128 PKNHREEQKWSPVVYFDRPRCILCYRCVRMCGEGMDVFALGIQNRGSSSVIAPNVPAQLS 187

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEG 121
             D+  + C  CG+C +ACPV A+  G
Sbjct: 188 PEDLPNLDCEQCGMCIDACPVGALTSG 214


>gi|293402452|ref|ZP_06646588.1| sulfite reductase, subunit C [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291304115|gb|EFE45368.1| sulfite reductase, subunit C [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 334

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 8/74 (10%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G   L +     + CI C  C   C + A  + S            R + D   C+ CG 
Sbjct: 164 GIVGLTKPIYDPDLCIGCGSCVKACESHATRVLS--------MVNNRIEKDACCCVGCGE 215

Query: 109 CQEACPVDAIVEGP 122
           C   CP +A+   P
Sbjct: 216 CTLVCPTNAMRRSP 229


>gi|255527636|ref|ZP_05394497.1| sulfite reductase, subunit C [Clostridium carboxidivorans P7]
 gi|296185314|ref|ZP_06853724.1| sulfite reductase, subunit C [Clostridium carboxidivorans P7]
 gi|255508678|gb|EET85057.1| sulfite reductase, subunit C [Clostridium carboxidivorans P7]
 gi|296050148|gb|EFG89572.1| sulfite reductase, subunit C [Clostridium carboxidivorans P7]
          Length = 317

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 21/75 (28%), Gaps = 8/75 (10%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G   +        RCI C+ C   C                +    +   D  KCI CG 
Sbjct: 160 GIIGMTEPQYDRYRCIGCQACVKNC--------KKRSTGALSFENFKVVRDHDKCIGCGE 211

Query: 109 CQEACPVDAIVEGPN 123
           C   CP  A      
Sbjct: 212 CVGKCPTGAWTRSDE 226


>gi|170290379|ref|YP_001737195.1| heterodisulfide reductase, subunit A [Candidatus Korarchaeum
           cryptofilum OPF8]
 gi|170174459|gb|ACB07512.1| Heterodisulfide reductase, subunit A [Candidatus Korarchaeum
           cryptofilum OPF8]
          Length = 648

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 32/96 (33%), Gaps = 15/96 (15%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE-------SGPRCHDGTRRTVRYDI 98
            FR     R     +++C+AC +C   CP + +                        Y I
Sbjct: 226 DFRVRVKKRARYVDQDKCVACGICAESCPVEVLNEWYARLGKRKAAYIPFPQSVPRAYVI 285

Query: 99  DMIKCIY-----CGLCQEACPVDAIVEGP---NFEF 126
           D   C++     C  C+E CP  AI        FE 
Sbjct: 286 DRENCLFFRDGSCRKCEEVCPAKAIDLSESDGEFEL 321



 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 11/60 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E C  C  C   CP  AI +E G              +  + C+ CG+CQ ACP  AI
Sbjct: 578 NSELCTGCGACVEECPFSAIVLEEGKA-----------KVLPLACMGCGICQGACPTGAI 626


>gi|297619404|ref|YP_003707509.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus voltae A3]
 gi|297378381|gb|ADI36536.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           voltae A3]
          Length = 351

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 31/61 (50%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           N  ++C+ C +C   CPA AI +          +      +D   C+YC +C++ACP DA
Sbjct: 148 NFNDKCVLCGICAEYCPADAIQLIPNDLNSKSLKPYKEIVVDTDACVYCKVCEKACPHDA 207

Query: 118 I 118
           I
Sbjct: 208 I 208



 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R     R     +  C+ C +C  ICP +AI +        G     + DI   KC+ CG
Sbjct: 17  REGVESRILKWEDCVCVGCGICSEICPTKAIEMGPLGAIFRGDIEADKVDIS-EKCVLCG 75

Query: 108 LCQEACPVDAIVEGPN 123
           +C  ACP DA+    N
Sbjct: 76  MCACACPFDAMNLSIN 91



 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 8/75 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESG--------PRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             + C+ CK+CE  CP  AI             P+         + +ID   C+ CG C 
Sbjct: 189 DTDACVYCKVCEKACPHDAIEAICYKCPLASRIPKPELYKEIKGQTNIDKELCVTCGWCA 248

Query: 111 EACPVDAIVEGPNFE 125
             CP +AI     FE
Sbjct: 249 NICPAEAIEVQKPFE 263



 Score = 42.8 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 5/84 (5%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT----IESGPRCHDGTRRTV 94
           E G     FRG+       +  E+C+ C +C   CP  A+      +S        +   
Sbjct: 48  EMGPLGAIFRGDIE-ADKVDISEKCVLCGMCACACPFDAMNLSINGKSIKEMEQYPKIKR 106

Query: 95  RYDIDMIKCIYCGLCQEACPVDAI 118
              ++  KC+ C  C+  CP  AI
Sbjct: 107 DITLNQDKCVLCEQCEIVCPQCAI 130



 Score = 42.0 bits (97), Expect = 0.024,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +++C+ C+ CE +CP  AI  E      +     +       KC+ CG+C E CP DAI
Sbjct: 111 NQDKCVLCEQCEIVCPQCAI--EVERELPERKTLVLGEINFNDKCVLCGICAEYCPADAI 168

Query: 119 VEGPN 123
              PN
Sbjct: 169 QLIPN 173



 Score = 41.6 bits (96), Expect = 0.040,   Method: Composition-based stats.
 Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 8/83 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P E       F GE  +      E+ C AC  C ++CP  A+     P+       T R
Sbjct: 251 CPAEAIEVQKPFEGELIV-----NEKACNACGACVSVCPCNALVF---PKSKVQGEITPR 302

Query: 96  YDIDMIKCIYCGLCQEACPVDAI 118
            +++   C+ CG C  ACPV A+
Sbjct: 303 VEVNQDVCVLCGACTHACPVSAL 325



 Score = 37.4 bits (85), Expect = 0.74,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 8/78 (10%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                  +    +    +E C+ C  C  ICPA+AI ++                ++   
Sbjct: 221 IPKPELYKEIKGQTNIDKELCVTCGWCANICPAEAIEVQKPFEGEL--------IVNEKA 272

Query: 103 CIYCGLCQEACPVDAIVE 120
           C  CG C   CP +A+V 
Sbjct: 273 CNACGACVSVCPCNALVF 290


>gi|134094633|ref|YP_001099708.1| putative iron-sulfur binding protein [Herminiimonas arsenicoxydans]
 gi|133738536|emb|CAL61581.1| putative ferredoxin [Herminiimonas arsenicoxydans]
          Length = 699

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 9/79 (11%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + C  C  C   CP  A+T  +         +          C+ CGLC++ CP +AI
Sbjct: 566 NRDACTLCMSCVGACPESALTDNANAPQLRFIEKN---------CVQCGLCEKTCPENAI 616

Query: 119 VEGPNFEFATETRQELYYD 137
              P        ++    +
Sbjct: 617 TLVPRLLLTPAAKELQVLN 635



 Score = 41.2 bits (95), Expect = 0.047,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 14/36 (38%)

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
           R      ID+  CI C  C E CP  AI      + 
Sbjct: 189 RWQQDNPIDLESCIRCNACIEVCPESAIDLTYQIDL 224



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 17/90 (18%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           I C  C  IC A+AI+                  ++   C  CG C   CP  A+     
Sbjct: 326 IGCNACIEICSAEAISHNGN-----------HVKVNPNLCAGCGACTTVCPSGAMA---- 370

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIV 153
             +A    +++    + LLN   +      
Sbjct: 371 --YAYPRTEDMGLRVKTLLNTYAKAGGRQA 398



 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 14/60 (23%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           +  P   E CI C  C  +CP  AI               + Y ID+ KC   G C +AC
Sbjct: 192 QDNPIDLESCIRCNACIEVCPESAID--------------LTYQIDLDKCRSHGDCVKAC 237


>gi|147920864|ref|YP_685329.1| heterodisulfide reductase, subunit A [uncultured methanogenic
           archaeon RC-I]
 gi|110620725|emb|CAJ36003.1| heterodisulfide reductase, subunit A [uncultured methanogenic
           archaeon RC-I]
          Length = 658

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 6/64 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +  C  C +C  +CP +AIT+              + +++   C  CG C  ACP  AI
Sbjct: 581 DDALCSGCGVCVGLCPYKAITMVDIEDGK------RKANLNDAMCKGCGTCGGACPAKAI 634

Query: 119 VEGP 122
               
Sbjct: 635 RMQH 638



 Score = 33.9 bits (76), Expect = 6.6,   Method: Composition-based stats.
 Identities = 8/21 (38%), Positives = 9/21 (42%)

Query: 103 CIYCGLCQEACPVDAIVEGPN 123
           C  CG+C   CP  AI     
Sbjct: 585 CSGCGVCVGLCPYKAITMVDI 605


>gi|62181094|ref|YP_217511.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62128727|gb|AAX66430.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|322715581|gb|EFZ07152.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 287

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 25/78 (32%), Gaps = 12/78 (15%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            + C  C  C   CP   I  +                I   +C  CG C   CP  A+ 
Sbjct: 190 PQECRMCGACWRSCPENVIQFDDD-----------TLTIAAARCTGCGGCAAVCPHQALR 238

Query: 120 EGPNFEFATETRQELYYD 137
              + E A+ TR    + 
Sbjct: 239 LRFDVEPAS-TRHSAVHT 255



 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 11/50 (22%)

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  +CPAQA ++  G              ID  +CI CG C   CPVDAI
Sbjct: 29  CADVCPAQAFSLAQGQVS-----------IDTTRCIACGDCLFVCPVDAI 67


>gi|33151623|ref|NP_872976.1| electron transport complex protein RnfC [Haemophilus ducreyi
           35000HP]
 gi|71153698|sp|Q7VNT4|RNFC_HAEDU RecName: Full=Electron transport complex protein rnfC
 gi|33147844|gb|AAP95365.1| putative iron-sulfur binding NADH dehydrogenase [Haemophilus
           ducreyi 35000HP]
          Length = 702

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 34/107 (31%), Gaps = 3/107 (2%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E  CI C  C   CP   +  +               +  +  CI CG+C   CP  
Sbjct: 379 PEPERNCIRCSNCSDACPVS-LLPQQLYWFARAEDHQKSMEYHLDACIECGVCAYVCP-S 436

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            I     F        E+    ++      R+E+   R +  +   R
Sbjct: 437 YIPLIQYFRQEKAKINEVEQKAKKAEEAKLRFEAREAR-LQKEKEAR 482


>gi|116753878|ref|YP_842996.1| cobyrinic acid a,c-diamide synthase [Methanosaeta thermophila PT]
 gi|116665329|gb|ABK14356.1| Cobyrinic acid a,c-diamide synthase [Methanosaeta thermophila PT]
          Length = 277

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 26/80 (32%), Gaps = 11/80 (13%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100
                  R E  +      E+ C+ C  C  +C   AI +              R  +  
Sbjct: 45  PEMKLLDRKECTVPVPQIDEKLCVHCGRCAEVCAFNAIAVIP-----------TRAVVFP 93

Query: 101 IKCIYCGLCQEACPVDAIVE 120
             C  CG C  +CP  AI E
Sbjct: 94  ELCHGCGACMISCPEKAISE 113



 Score = 34.3 bits (77), Expect = 5.2,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGP 122
              ID   C++CG C E C  +AI   P
Sbjct: 59  VPQIDEKLCVHCGRCAEVCAFNAIAVIP 86


>gi|118580371|ref|YP_901621.1| cobyrinic acid a,c-diamide synthase [Pelobacter propionicus DSM
           2379]
 gi|118503081|gb|ABK99563.1| Cobyrinic acid a,c-diamide synthase [Pelobacter propionicus DSM
           2379]
          Length = 285

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 18/62 (29%), Gaps = 11/62 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  C  C  C   C   AI                +  I    C  CG C   CP  AI
Sbjct: 63  DEALCDGCGECGRFCQYHAIVSFG-----------TKPVIFPEMCHGCGGCMAVCPRRAI 111

Query: 119 VE 120
            E
Sbjct: 112 SE 113


>gi|308160391|gb|EFO62883.1| Nitroreductase family protein fused to ferredoxin domain Fd-NR1
           [Giardia lamblia P15]
          Length = 281

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 24/67 (35%), Gaps = 8/67 (11%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           R     E+ CI C +C   CP Q I + +  R      +          CI CG C   C
Sbjct: 3   RFPEVDEDLCIGCNVCVQGCPIQCIEVNAETRKLVFRAKET--------CISCGHCASVC 54

Query: 114 PVDAIVE 120
              AI  
Sbjct: 55  RTAAISM 61


>gi|326789304|ref|YP_004307125.1| nitroreductase [Clostridium lentocellum DSM 5427]
 gi|326540068|gb|ADZ81927.1| nitroreductase [Clostridium lentocellum DSM 5427]
          Length = 272

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 33/107 (30%), Gaps = 14/107 (13%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 E+C  C LC   C A+ I++  G                   C  CG C   CP
Sbjct: 1   MITINTEKCTGCSLCIKDCFARDISLVDGKAVASNKT-----------CFKCGHCIAICP 49

Query: 115 VDAIVEG--PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
             A+        E      +    + + LL N  ++   I +    D
Sbjct: 50  QKAVSTTEYNMNEVKDYDAESFNINADHLL-NFIKFRRTIRQFKKQD 95


>gi|283131411|dbj|BAI63412.1| putative pyruvate ferredoxin/flavodoxin oxidoreductase family
           protein [Streptococcus dysgalactiae subsp. equisimilis]
          Length = 1215

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 23/71 (32%), Gaps = 14/71 (19%)

Query: 58  NGEERCIACKLCEAICPAQAITI------------ESGPRCHDGTRRTVRYDIDM--IKC 103
             +  C+ C  C  +CP  AI              E         +    Y I +    C
Sbjct: 700 WDKSHCVQCHRCSFVCPHAAIRPILIDDEELALAPEGYQVMDFKGKDGSYYRIQVSVEDC 759

Query: 104 IYCGLCQEACP 114
             C LC EACP
Sbjct: 760 TGCQLCVEACP 770


>gi|283131351|dbj|BAI63355.1| putative pyruvate ferredoxin/flavodoxin oxidoreductase family
           protein [Streptococcus dysgalactiae subsp. equisimilis]
 gi|323128106|gb|ADX25403.1| pyruvate ferredoxin/flavodoxin oxidoreductase family protein
           [Streptococcus dysgalactiae subsp. equisimilis ATCC
           12394]
          Length = 1202

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 23/71 (32%), Gaps = 14/71 (19%)

Query: 58  NGEERCIACKLCEAICPAQAITI------------ESGPRCHDGTRRTVRYDIDM--IKC 103
             +  C+ C  C  +CP  AI              E         +    Y I +    C
Sbjct: 687 WDKSHCVQCHRCSFVCPHAAIRPILIDDEELALAPEGYQVMDFKGKDGSYYRIQVSVEDC 746

Query: 104 IYCGLCQEACP 114
             C LC EACP
Sbjct: 747 TGCQLCVEACP 757


>gi|283131308|dbj|BAI63313.1| putative pyruvate ferredoxin/flavodoxin oxidoreductase family
           protein [Streptococcus dysgalactiae subsp. equisimilis]
          Length = 1202

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 23/71 (32%), Gaps = 14/71 (19%)

Query: 58  NGEERCIACKLCEAICPAQAITI------------ESGPRCHDGTRRTVRYDIDM--IKC 103
             +  C+ C  C  +CP  AI              E         +    Y I +    C
Sbjct: 687 WDKSHCVQCHRCSFVCPHAAIRPILIDDEELALAPEGYQVMDFKGKDGSYYRIQVSVEDC 746

Query: 104 IYCGLCQEACP 114
             C LC EACP
Sbjct: 747 TGCQLCVEACP 757


>gi|281356261|ref|ZP_06242754.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Victivallis
           vadensis ATCC BAA-548]
 gi|281317630|gb|EFB01651.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Victivallis
           vadensis ATCC BAA-548]
          Length = 491

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 13/64 (20%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +E+C+ C  C   CP+  I +  G              ID  +C+ C  C  ACPV AI
Sbjct: 213 DKEQCVKCGKCVRSCPSGCIALAKGE-------------IDNERCVRCMNCFSACPVGAI 259

Query: 119 VEGP 122
             G 
Sbjct: 260 HYGH 263



 Score = 41.6 bits (96), Expect = 0.036,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 6/53 (11%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
             C  C   CP  A+ +E   R     +      +    CI CG C+ ACPV 
Sbjct: 403 TDCGACAEHCPTGALRMEPDSRGIRIPK------LTSELCIGCGSCEYACPVR 449



 Score = 39.3 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 23/75 (30%), Gaps = 5/75 (6%)

Query: 54  RRYPNGEERC-IACKLCEAICPAQAITIESGPRCHDGTRRTVRY----DIDMIKCIYCGL 108
                    C   C  C  +CP  AI   + P           Y     + +     CG 
Sbjct: 348 VHLKFDRGMCEFNCDNCGRVCPTGAIVPMALPDKRRCRIGLAEYIPPLCVAVADGTDCGA 407

Query: 109 CQEACPVDAIVEGPN 123
           C E CP  A+   P+
Sbjct: 408 CAEHCPTGALRMEPD 422


>gi|254451326|ref|ZP_05064763.1| NAD-dependent formate dehydrogenase alpha subunit [Octadecabacter
           antarcticus 238]
 gi|198265732|gb|EDY90002.1| NAD-dependent formate dehydrogenase alpha subunit [Octadecabacter
           antarcticus 238]
          Length = 984

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACPVDAI 118
           CI C LC   C  +    +       G      +D    +    C+ CG C +ACP  A+
Sbjct: 151 CIQCGLCVRACR-EVQVNDVIGMSGRGQDSYPTFDLADPMGDSTCVACGECVQACPTGAL 209

Query: 119 V 119
           +
Sbjct: 210 M 210


>gi|182625936|ref|ZP_02953701.1| [Fe] hydrogenase [Clostridium perfringens D str. JGS1721]
 gi|177908849|gb|EDT71347.1| [Fe] hydrogenase [Clostridium perfringens D str. JGS1721]
          Length = 696

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 9/68 (13%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              EE+CI C  C+ IC                   ++    D   CI CG C   CP  
Sbjct: 21  CRDEEKCIKCGSCKNICTD---------YIGVNGHYSLEKTNDTAVCINCGQCANVCPTS 71

Query: 117 AIVEGPNF 124
           +I E  ++
Sbjct: 72  SITEVFDY 79


>gi|297619768|ref|YP_003707873.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus voltae A3]
 gi|297378745|gb|ADI36900.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           voltae A3]
          Length = 169

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPVDAI 118
           + CI C  C   CP +AIT+E           +  +   ID  KC+YC  C + CP+ A+
Sbjct: 52  DICIGCGGCANACPTKAITMEQIEPIKLTEDYSKEFIPVIDAEKCVYCLYCHDFCPIFAL 111

Query: 119 V 119
            
Sbjct: 112 F 112



 Score = 37.0 bits (84), Expect = 0.85,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 10/21 (47%)

Query: 103 CIYCGLCQEACPVDAIVEGPN 123
           CI CG C  ACP  AI     
Sbjct: 54  CIGCGGCANACPTKAITMEQI 74


>gi|157373977|ref|YP_001472577.1| formate dehydrogenase, alpha subunit [Shewanella sediminis HAW-EB3]
 gi|157316351|gb|ABV35449.1| formate dehydrogenase, alpha subunit [Shewanella sediminis HAW-EB3]
          Length = 1440

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 15/95 (15%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP----AQAITIESG----------- 83
           E      +F  + +         RCI+C  C  +C       AI+               
Sbjct: 642 EPADAPRQFSIDTSSPFITFDANRCISCGACVEVCQGQDGHNAISFAPDNYQALPTEIAV 701

Query: 84  PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +C    R      ++   C+ CG C + CP  A+
Sbjct: 702 QQCKRAPRAGFSASMNDSDCVQCGSCVQVCPTGAL 736


>gi|149915521|ref|ZP_01904047.1| dihydroorotate dehydrogenase family protein [Roseobacter sp.
           AzwK-3b]
 gi|149810413|gb|EDM70256.1| dihydroorotate dehydrogenase family protein [Roseobacter sp.
           AzwK-3b]
          Length = 434

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 8/63 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117
            ++ CI C  C A C       E              +++   +C+ C LC   CPVD  
Sbjct: 343 DQDACIKCGRCYAAC-------EDTSHQAISMSEDRVFEVIDAECVACNLCVNVCPVDGC 395

Query: 118 IVE 120
           I  
Sbjct: 396 ITM 398


>gi|148378021|ref|YP_001252562.1| iron-sulfur cluster-binding protein [Clostridium botulinum A str.
           ATCC 3502]
 gi|148287505|emb|CAL81564.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           3502]
          Length = 354

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           E+CI C  C  +CP +   I+   +             +M KCI C  CQE CP  AI
Sbjct: 286 EKCIGCNRCAEVCPEKPYVIDMIKKGGKKIPVW-----NMKKCIRCFCCQELCPKGAI 338


>gi|77920192|ref|YP_358007.1| glutamate synthase subunit beta-like [Pelobacter carbinolicus DSM
           2380]
 gi|77546275|gb|ABA89837.1| glutamate synthase, beta subunit-like protein [Pelobacter
           carbinolicus DSM 2380]
          Length = 547

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 29/84 (34%), Gaps = 14/84 (16%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPR---------CHDGTRRTVRYDIDMIK-- 102
            +     ERC  C  C A C   AI  +   R             TR T +  I      
Sbjct: 16  WKIQYHPERCTLCGSCIAACTFDAIGPKMERRRITFTESATPEPKTRFTAQPVIAQANKI 75

Query: 103 ---CIYCGLCQEACPVDAIVEGPN 123
              C  CG+C+  CP +AI    N
Sbjct: 76  KNFCRGCGVCERVCPNNAISSSRN 99


>gi|78221904|ref|YP_383651.1| electron transfer flavoprotein subunit alpha [Geobacter
           metallireducens GS-15]
 gi|78193159|gb|ABB30926.1| Electron transfer flavoprotein, alpha subunit [Geobacter
           metallireducens GS-15]
          Length = 443

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 11/62 (17%)

Query: 60  EERCIACK-LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +CIAC   C++ CP  AI +                 I   KCI C  C + CP DA+
Sbjct: 18  PGKCIACGARCQSACPVDAIEMSDAGEP----------IILSEKCIGCLKCVKVCPADAL 67

Query: 119 VE 120
             
Sbjct: 68  EM 69



 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/24 (58%), Positives = 14/24 (58%), Gaps = 1/24 (4%)

Query: 100 MIKCIYCGL-CQEACPVDAIVEGP 122
             KCI CG  CQ ACPVDAI    
Sbjct: 18  PGKCIACGARCQSACPVDAIEMSD 41


>gi|116753332|ref|YP_842450.1| putative ATPase RIL [Methanosaeta thermophila PT]
 gi|116664783|gb|ABK13810.1| ABC transporter related protein [Methanosaeta thermophila PT]
          Length = 584

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 3/73 (4%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +R      +RC   K C   C      + +G           +  I    C+ CG+C   
Sbjct: 1   MRIAVVNRDRCQPRK-CARECEYFCPPVRTGD--ETIVFVDDKPVITENLCVGCGICVRK 57

Query: 113 CPVDAIVEGPNFE 125
           CP  AI      E
Sbjct: 58  CPFGAITITNLPE 70


>gi|293401784|ref|ZP_06645925.1| putative 4Fe-4S binding domain protein [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291304736|gb|EFE45984.1| putative 4Fe-4S binding domain protein [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 208

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 12/66 (18%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L      +  CI C  C + CP Q I            ++   Y I    C++CGLC E 
Sbjct: 148 LHDGYQIQTNCIGCNKCLSSCPQQCI------------KQGKPYHIVQSHCLHCGLCYEL 195

Query: 113 CPVDAI 118
           CPV AI
Sbjct: 196 CPVHAI 201


>gi|283769432|ref|ZP_06342330.1| hydrogenase, Fe-only [Bulleidia extructa W1219]
 gi|283103957|gb|EFC05342.1| hydrogenase, Fe-only [Bulleidia extructa W1219]
          Length = 490

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 9/65 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++C  C LC   C   A  ++      +G R           CI CG C  ACP D I
Sbjct: 23  DLDKCKNCTLCRRACVNDAGVMDFYDLTTNGDRPI---------CINCGQCAVACPFDCI 73

Query: 119 VEGPN 123
            E   
Sbjct: 74  NERSE 78


>gi|262274542|ref|ZP_06052353.1| electron transport complex protein RnfB [Grimontia hollisae CIP
           101886]
 gi|262221105|gb|EEY72419.1| electron transport complex protein RnfB [Grimontia hollisae CIP
           101886]
          Length = 194

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 10/66 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E+ CI C  C   CP  AI   +             + +   +C  C LC   CP D
Sbjct: 108 FIHEDDCIGCTKCIQACPVDAIVGSTK----------AMHTVIKDECTGCDLCVAPCPTD 157

Query: 117 AIVEGP 122
            I   P
Sbjct: 158 CIEMIP 163


>gi|218131017|ref|ZP_03459821.1| hypothetical protein BACEGG_02620 [Bacteroides eggerthii DSM 20697]
 gi|317477088|ref|ZP_07936330.1| 4Fe-4S binding domain-containing protein [Bacteroides eggerthii
           1_2_48FAA]
 gi|217986721|gb|EEC53054.1| hypothetical protein BACEGG_02620 [Bacteroides eggerthii DSM 20697]
 gi|316906881|gb|EFV28593.1| 4Fe-4S binding domain-containing protein [Bacteroides eggerthii
           1_2_48FAA]
          Length = 373

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 10/55 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
               CI C +C   C   AI + +  +            ID  KC+ CG C   C
Sbjct: 192 DTGNCIGCNICVKHCAHDAIHLNAERKAE----------IDYAKCVGCGQCVALC 236


>gi|171059431|ref|YP_001791780.1| formate dehydrogenase subunit alpha [Leptothrix cholodnii SP-6]
 gi|170776876|gb|ACB35015.1| formate dehydrogenase, alpha subunit [Leptothrix cholodnii SP-6]
          Length = 969

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 24/75 (32%), Gaps = 3/75 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     SG          +       +C+ CG C +
Sbjct: 171 YFTYDPSKCIVCNRCVRACEETQGTFALTISGRGFESRVSAGMDEPFMQSECVSCGACVQ 230

Query: 112 ACPVDAIVEGPNFEF 126
           ACP   + E    E 
Sbjct: 231 ACPTATLTEKSVIEL 245


>gi|168211789|ref|ZP_02637414.1| [Fe] hydrogenase [Clostridium perfringens B str. ATCC 3626]
 gi|170710254|gb|EDT22436.1| [Fe] hydrogenase [Clostridium perfringens B str. ATCC 3626]
          Length = 696

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 9/68 (13%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              EE+CI C  C+ IC                   ++    D   CI CG C   CP  
Sbjct: 21  CRDEEKCIKCGSCKNICTD---------YIGVNGHYSLEKTNDTAVCINCGQCANVCPTS 71

Query: 117 AIVEGPNF 124
           +I E  ++
Sbjct: 72  SITEVFDY 79


>gi|218780081|ref|YP_002431399.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761465|gb|ACL03931.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 269

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 29/82 (35%), Gaps = 13/82 (15%)

Query: 38  FEKGSTSPRFRGEHALRRY--PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
              G+    FR   A         EE C  C  C  +CP  AITIE      D       
Sbjct: 170 EVPGNKPYIFRDRSAWEHIAASTIEETCTLCGDCVDMCPMGAITIEDDAVKTDNMA---- 225

Query: 96  YDIDMIKCIYCGLCQEACPVDA 117
                  CI C  C + CPV+A
Sbjct: 226 -------CILCCACIKGCPVNA 240


>gi|160938700|ref|ZP_02086052.1| hypothetical protein CLOBOL_03595 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438399|gb|EDP16158.1| hypothetical protein CLOBOL_03595 [Clostridium bolteae ATCC
           BAA-613]
          Length = 361

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 15/74 (20%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ++C++CK CE +C   A  +                 +DM KC  CGLC + CP  A+  
Sbjct: 289 KKCVSCKKCETVCCYDARKLT-----------FPEMTVDMDKCRCCGLCLDVCPTGALTA 337

Query: 121 GPNFEFATETRQEL 134
               E A +T ++L
Sbjct: 338 ----ELAPQTEKDL 347


>gi|91202796|emb|CAJ72435.1| similar to sodium dependent NADH:ubiquinone oxidoreductase RnfB
           [Candidatus Kuenenia stuttgartiensis]
          Length = 274

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 30/82 (36%), Gaps = 11/82 (13%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P  K         +         ++ CIACK CE  CP  AI +++              
Sbjct: 188 PESKMVHVRCKSLDKGAVAKKICQDSCIACKRCEKECPYDAIHVQNNLAV---------- 237

Query: 97  DIDMIKCIYCGLCQEACPVDAI 118
            ID  KC  CG C + CP   I
Sbjct: 238 -IDYQKCTSCGKCVDVCPNHTI 258



 Score = 42.4 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 5/77 (6%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRT-----VRYDIDMIKCIYCGLCQEACP 114
            ERC  C  C  +CP + I+I    +      ++     V   I    CI C  C++ CP
Sbjct: 166 RERCTGCGKCAEVCPREIISILPESKMVHVRCKSLDKGAVAKKICQDSCIACKRCEKECP 225

Query: 115 VDAIVEGPNFEFATETR 131
            DAI    N       +
Sbjct: 226 YDAIHVQNNLAVIDYQK 242



 Score = 38.5 bits (88), Expect = 0.29,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 10/65 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +  C+    C   C  +A+ +                 +   +C  CG C E CP + I
Sbjct: 135 CDYGCLGLGTCVEACKFEAMYMGKDGLPK----------VIRERCTGCGKCAEVCPREII 184

Query: 119 VEGPN 123
              P 
Sbjct: 185 SILPE 189


>gi|134298507|ref|YP_001112003.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfotomaculum reducens MI-1]
 gi|134051207|gb|ABO49178.1| putative adenylylsulfate reductase-associated electron transfer
           protein QmoA [Desulfotomaculum reducens MI-1]
          Length = 414

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 23/78 (29%), Gaps = 9/78 (11%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQ-------AITIESGPRCHDGTRRTVRYDIDMIKCI 104
                    + C  C  C  +CP +        +               ++Y ID   C 
Sbjct: 94  VKMNPRYVTDNCTGCGKCSEVCPVERANAFNLGMDKTKAVYLPQPFAYPMKYVIDNTACT 153

Query: 105 Y--CGLCQEACPVDAIVE 120
              CG C E C V AI  
Sbjct: 154 GASCGKCVEVCDVKAIDL 171



 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 3/67 (4%)

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV---DAIVEGPNFEFATETRQELYYD 137
            SG   +      +        C  CG C E CPV   +A   G +   A    Q   Y 
Sbjct: 83  ISGQEGNFDVTVKMNPRYVTDNCTGCGKCSEVCPVERANAFNLGMDKTKAVYLPQPFAYP 142

Query: 138 KERLLNN 144
            + +++N
Sbjct: 143 MKYVIDN 149


>gi|323701256|ref|ZP_08112931.1| FAD dependent oxidoreductase [Desulfotomaculum nigrificans DSM 574]
 gi|323533858|gb|EGB23722.1| FAD dependent oxidoreductase [Desulfotomaculum nigrificans DSM 574]
          Length = 416

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 25/70 (35%), Gaps = 9/70 (12%)

Query: 61  ERCIACKLCEAICPAQ-------AITIESGPRCHDGTRRTVRYDIDMIKCIY--CGLCQE 111
           + C  C  C  +CP +        +               ++Y ID   C    CG C E
Sbjct: 103 DNCTGCGKCAEVCPVERANDFNFGLDKTKAAYLAHPFAFPMKYVIDDTACTGASCGKCVE 162

Query: 112 ACPVDAIVEG 121
           AC V AI  G
Sbjct: 163 ACEVKAIDLG 172



 Score = 35.5 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 8/22 (36%), Positives = 10/22 (45%)

Query: 94  VRYDIDMIKCIYCGLCQEACPV 115
           ++       C  CG C E CPV
Sbjct: 96  IKPRYVADNCTGCGKCAEVCPV 117


>gi|315425450|dbj|BAJ47114.1| ABC transporter ATP-binding protein [Candidatus Caldiarchaeum
           subterraneum]
          Length = 595

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 9/82 (10%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            L R     ++C     C   CP     IE+     DG        I    CI CG+C +
Sbjct: 9   VLDRDRCDSKKCGN-WPCITYCPPVRNNIEAIKMGEDGF-----PIISETLCISCGICVK 62

Query: 112 ACPVDAIVEGPNFEFATETRQE 133
            CP +AI         TE R++
Sbjct: 63  KCPFEAITIIN---LPTELRED 81


>gi|254519305|ref|ZP_05131361.1| electron transport complex protein [Clostridium sp. 7_2_43FAA]
 gi|226913054|gb|EEH98255.1| electron transport complex protein [Clostridium sp. 7_2_43FAA]
          Length = 308

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 21/57 (36%), Gaps = 1/57 (1%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                CI C  C  +CP     I+       G +          KCI CGLC  ACP
Sbjct: 237 EESYSCIRCGKCLRVCPEGLNPIKLVELYKMGEKEEFI-KFGGEKCIDCGLCSFACP 292


>gi|241948529|ref|XP_002416987.1| ABC-family memebr, APTPase, iron-sulfur protein required for
           ribosome biogenesis and translation initiation, putative
           [Candida dubliniensis CD36]
 gi|223640325|emb|CAX44575.1| ABC-family memebr, APTPase, iron-sulfur protein required for
           ribosome biogenesis and translation initiation, putative
           [Candida dubliniensis CD36]
          Length = 622

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 25/56 (44%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           K C+  C      +++G  C + T  +    I    CI CG+C + CP DAI    
Sbjct: 34  KKCKQECRKSCPVVKTGKLCIEVTPASKIAFISETLCIGCGICVKKCPFDAITIIN 89


>gi|218133772|ref|ZP_03462576.1| hypothetical protein BACPEC_01641 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991147|gb|EEC57153.1| hypothetical protein BACPEC_01641 [Bacteroides pectinophilus ATCC
           43243]
          Length = 265

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 29/88 (32%), Gaps = 11/88 (12%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P++   T      +            CI C LC   C   AIT+E+             
Sbjct: 189 IPYDAPLTVNCASKDKGKDVMAVCSTGCIGCMLCTKQCEFGAITVENNIAH--------- 239

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPN 123
             ID  KC  CG C E CP   I    N
Sbjct: 240 --IDYDKCTGCGKCAEKCPKKIITRHNN 265



 Score = 35.1 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 25/78 (32%), Gaps = 5/78 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQEAC 113
            +E+C AC  C A CP   I +               +      +    CI C LC + C
Sbjct: 167 DKEKCKACGKCVATCPRNLIELIPYDAPLTVNCASKDKGKDVMAVCSTGCIGCMLCTKQC 226

Query: 114 PVDAIVEGPNFEFATETR 131
              AI    N       +
Sbjct: 227 EFGAITVENNIAHIDYDK 244


>gi|242006426|ref|XP_002424051.1| ATP-binding cassette subfamily E, member 1 [Pediculus humanus
           corporis]
 gi|212507357|gb|EEB11313.1| ATP-binding cassette subfamily E, member 1 [Pediculus humanus
           corporis]
          Length = 608

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 21/56 (37%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           K C+  C      +  G  C +         I    CI CG+C + CP +AI    
Sbjct: 27  KRCKQECKKSCPVVRMGKLCIEVVPNDKIATISEELCIGCGICVKKCPFEAITIIN 82


>gi|153955946|ref|YP_001396711.1| hypothetical protein CKL_3337 [Clostridium kluyveri DSM 555]
 gi|219856288|ref|YP_002473410.1| hypothetical protein CKR_2945 [Clostridium kluyveri NBRC 12016]
 gi|146348804|gb|EDK35340.1| Automatic annotation [Clostridium kluyveri DSM 555]
 gi|219570012|dbj|BAH07996.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 1172

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 37/118 (31%), Gaps = 24/118 (20%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAIT-----IESGPRCHDGTRRTV-------- 94
           RG   +       ++CI C  C  +CP   I       E       G +           
Sbjct: 675 RGIAVMIPEWQ-IDKCIQCNQCAMVCPHATIRSFLLNEEEVKNSPQGFQSKKALGSGLDG 733

Query: 95  ---RYDIDMIKCIYCGLCQEACPVD--AIVEGPNFEFATETRQELYY-----DKERLL 142
              +  +  + C  CG C + CP    A+V  P  E      +   Y      KE L+
Sbjct: 734 LNFKIQVSPMDCTGCGNCADICPAPGKALVMKPLEEKVDVESENWDYALKITPKEDLI 791


>gi|78356256|ref|YP_387705.1| heterodisulfide reductase subunit A [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78218661|gb|ABB38010.1| heterodisulfide reductase, A subunit [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 660

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 6/64 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              RC+ C  C   CP  A+        +      V+ D+    C  CG+C   CP  AI
Sbjct: 580 DTARCVGCMKCAMTCPFGAVRETQDRAGN------VKADVLETVCQGCGICTATCPHGAI 633

Query: 119 VEGP 122
               
Sbjct: 634 QLQH 637



 Score = 37.8 bits (86), Expect = 0.47,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 29/98 (29%), Gaps = 13/98 (13%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP--------RCHDGTRRTVRYD 97
            F  +   R+      +C  C LC   CP++                          +  
Sbjct: 225 NFEVKIRRRQTYVDWSKCTGCGLCMEKCPSKKSFDRFNEGVATTTAINIPFPQAIPKKAS 284

Query: 98  IDMIKC-----IYCGLCQEACPVDAIVEGPNFEFATET 130
           ID   C       CG+C++ CP+  I         TE 
Sbjct: 285 IDPDYCRKLQGKKCGVCEKFCPMGCIDFEQQETVVTEK 322


>gi|24372575|ref|NP_716617.1| formate dehydrogenase, alpha subunit [Shewanella oneidensis MR-1]
 gi|24346593|gb|AAN54062.1|AE015543_2 formate dehydrogenase, alpha subunit [Shewanella oneidensis MR-1]
          Length = 1428

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 23/75 (30%), Gaps = 15/75 (20%)

Query: 59  GEERCIACKLCEAICPAQAITI---------------ESGPRCHDGTRRTVRYDIDMIKC 103
              RCI+C  C  +C  Q+                   S        R      +    C
Sbjct: 647 DANRCISCGKCVDVCQQQSGHCAIQFAKDSYQVLPQSISPADERRAPRVGFSASMADSHC 706

Query: 104 IYCGLCQEACPVDAI 118
           + CG C + CP  A+
Sbjct: 707 VQCGNCVQVCPTGAL 721



 Score = 35.1 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 4/48 (8%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
             C+ C  C  +CP  A+      R  D T  T    I    C YCG+
Sbjct: 704 SHCVQCGNCVQVCPTGALVDARDKRQGDCTELTTASTI----CTYCGV 747


>gi|332879403|ref|ZP_08447100.1| 4Fe-4S binding domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332682823|gb|EGJ55723.1| 4Fe-4S binding domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 414

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 21/61 (34%), Gaps = 6/61 (9%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                   +C  C  C   C   AI IE             R  I+   C+ CGLC + C
Sbjct: 1   MIDICEYSQCTGCMACLNSCSHSAINIEFDDEG------FERPHINQDLCVDCGLCVQVC 54

Query: 114 P 114
           P
Sbjct: 55  P 55


>gi|255525440|ref|ZP_05392378.1| nitroreductase [Clostridium carboxidivorans P7]
 gi|296187867|ref|ZP_06856261.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
 gi|255510907|gb|EET87209.1| nitroreductase [Clostridium carboxidivorans P7]
 gi|296047824|gb|EFG87264.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
          Length = 268

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 10/60 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +E+CI C  C   CP   + +                 I   +C+ CG C   CP +AI
Sbjct: 7   NKEKCIKCGACVMECPISILRMGENGPEE----------IYEDRCMSCGHCVAVCPKEAI 56



 Score = 34.7 bits (78), Expect = 4.8,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 12/23 (52%)

Query: 101 IKCIYCGLCQEACPVDAIVEGPN 123
            KCI CG C   CP+  +  G N
Sbjct: 9   EKCIKCGACVMECPISILRMGEN 31


>gi|312111477|ref|YP_003989793.1| dihydroorotate dehydrogenase [Geobacillus sp. Y4.1MC1]
 gi|311216578|gb|ADP75182.1| dihydroorotate dehydrogenase family protein [Geobacillus sp.
           Y4.1MC1]
          Length = 427

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 22/71 (30%), Gaps = 4/71 (5%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
           H        ++ CI C  C   C   +          +G             C+ C LC 
Sbjct: 330 HYKVVARINKDVCINCNKCYISCEDASHQCIDRLTDENGKEYLKV---REEDCVGCNLCS 386

Query: 111 EACPVD-AIVE 120
             CPVD AI  
Sbjct: 387 IVCPVDGAIDM 397


>gi|302875429|ref|YP_003844062.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
 gi|302578286|gb|ADL52298.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B]
          Length = 613

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/99 (24%), Positives = 34/99 (34%), Gaps = 16/99 (16%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            L+YF       +   E         G           + C  C  C  +C   AI  + 
Sbjct: 531 TLKYF------RHEYEEHIKYKKCVAGVCNALVKYYITDDCKGCTKCMNVCAVDAINGQ- 583

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
                       R+ ID  KCI CG C++ C  DAI++ 
Sbjct: 584 ---------VRSRHIIDADKCIRCGACRKICSFDAIIKT 613


>gi|288942375|ref|YP_003444615.1| RnfABCDGE type electron transport complex subunit B [Allochromatium
           vinosum DSM 180]
 gi|288897747|gb|ADC63583.1| electron transport complex, RnfABCDGE type, B subunit
           [Allochromatium vinosum DSM 180]
          Length = 178

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 23/66 (34%), Gaps = 10/66 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C  C   CP  AI   +             + +    CI C LC E CP +
Sbjct: 104 HVNEGLCIGCTKCFKRCPTDAIMGANNM----------IHVVFADACIGCELCSEICPTE 153

Query: 117 AIVEGP 122
            I   P
Sbjct: 154 GIEMRP 159


>gi|116235066|dbj|BAF34982.1| trichloroethene reductive dehalogenase [uncultured Dehalococcoides
           sp.]
          Length = 540

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 3/60 (5%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID---MIKCIYCGLCQEACPVD 116
            E C  C +C   CP QAI+ E              Y+       KCI C  C+  CP  
Sbjct: 420 REFCKTCGICAEHCPTQAISHEGPRYDSPYWDNVSGYEGWHLDHHKCILCTNCESFCPFF 479



 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 103 CIYCGLCQEACPVDAI-VEGPNFE 125
           C  CG+C E CP  AI  EGP ++
Sbjct: 423 CKTCGICAEHCPTQAISHEGPRYD 446


>gi|332159501|ref|YP_004424780.1| putative ATPase RIL [Pyrococcus sp. NA2]
 gi|331034964|gb|AEC52776.1| putative ATPase RIL [Pyrococcus sp. NA2]
          Length = 589

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 21/73 (28%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +R      ++C   K    +C         G           +  I    C  CG+C   
Sbjct: 1   MRIAVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENNKPIIQEASCTGCGICVHK 60

Query: 113 CPVDAIVEGPNFE 125
           CP  AI      E
Sbjct: 61  CPFKAISIVNLPE 73


>gi|332158933|ref|YP_004424212.1| 2-ketoisovalerate ferredoxin oxidoreductase subunit delta
           [Pyrococcus sp. NA2]
 gi|331034396|gb|AEC52208.1| 2-ketoisovalerate ferredoxin oxidoreductase subunit delta
           [Pyrococcus sp. NA2]
          Length = 105

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 27/78 (34%), Gaps = 10/78 (12%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
            F G+         E +C+ C +C   CP  AI I+                ID   C  
Sbjct: 36  NFTGDWRTFMPVIDESKCVKCYICWKFCPEPAIYIKEDG----------FVAIDYDYCKG 85

Query: 106 CGLCQEACPVDAIVEGPN 123
           CG+C   CP  AI     
Sbjct: 86  CGICANECPTKAITMVRE 103


>gi|330506329|ref|YP_004382757.1| 4Fe-4S ferredoxin, iron-sulfur binding domain-containing protein
           [Methanosaeta concilii GP-6]
 gi|328927137|gb|AEB66939.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Methanosaeta
           concilii GP-6]
          Length = 368

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 24/71 (33%), Gaps = 11/71 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E C  C+ C   CP QAIT+           +     ID   C  CG C   CP  A+
Sbjct: 191 NAELCEGCRACADGCPNQAITV-----------KKKITQIDYSLCTGCGKCLRLCPAHAL 239

Query: 119 VEGPNFEFATE 129
                 E    
Sbjct: 240 DFDWIVEVPPF 250


>gi|325290778|ref|YP_004266959.1| NAD-dependent formate dehydrogenase catalytic subunit
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324966179|gb|ADY56958.1| NAD-dependent formate dehydrogenase catalytic subunit
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 894

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 59  GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115
              +CI C  C   C   Q   +         +R    +++   K  C++CG C   CPV
Sbjct: 144 DLNKCILCGKCVRACSEIQVNNVLGYVNRGFESRVGPAFNLPYGKSECVFCGTCLAVCPV 203

Query: 116 DAIVEGP 122
            A+ E  
Sbjct: 204 GALTEKK 210



 Score = 34.7 bits (78), Expect = 4.2,   Method: Composition-based stats.
 Identities = 12/52 (23%), Positives = 17/52 (32%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           P G+  C+ C  C A+CP  A+T +                        CG 
Sbjct: 185 PYGKSECVFCGTCLAVCPVGALTEKKMIAGGRPWELKKVRTTCPFCGTGCGF 236


>gi|323704276|ref|ZP_08115855.1| Fe-S cluster domain protein [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323536342|gb|EGB26114.1| Fe-S cluster domain protein [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 436

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 27/83 (32%), Gaps = 18/83 (21%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
                     +RC  C  C   CP +AI +  G              I   KCI CG C 
Sbjct: 1   MYFHSVTLDRDRCKGCTNCIKRCPTEAIRVRDGKA-----------KIIKEKCIDCGECV 49

Query: 111 EACPVDA-------IVEGPNFEF 126
             CP  A       I    N+++
Sbjct: 50  RVCPYHAKVVVTDDIGMMENYKY 72


>gi|302386096|ref|YP_003821918.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Clostridium
           saccharolyticum WM1]
 gi|302196724|gb|ADL04295.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Clostridium
           saccharolyticum WM1]
          Length = 1179

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/111 (20%), Positives = 31/111 (27%), Gaps = 26/111 (23%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ-----AITIESGPRCHDGTR- 91
           +EK   +    G           E CI C  C  +CP       A+T E      +  + 
Sbjct: 677 YEKRGIAVTIPGWV--------PENCIQCNFCSYVCPHAVIRSVALTEEEAAGKPEEMKT 728

Query: 92  --------RTVRYDIDMIKCIYCGLCQEACP----VDAIVEGPNFEFATET 130
                         +    C  CG C   CP      A+V     E   E 
Sbjct: 729 LPMTGMPGYQFAVTVSAFDCTGCGSCANVCPGKKGEKALVMVNMEENCAEK 779


>gi|295103567|emb|CBL01111.1| hypothetical protein [Faecalibacterium prausnitzii SL3/3]
          Length = 255

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 32/96 (33%), Gaps = 12/96 (12%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
            F   +  I   F  G  +P F             + CI C  C  +CP   I +E+G  
Sbjct: 152 EFPPPRENIYDRFMSGPVNPVFYRFFVKADAFRATDACIGCGKCVELCPLNNIRLENGKP 211

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
                       +    C +C  C   CP +AI  G
Sbjct: 212 ------------VWGKNCTHCMACICYCPKEAIEYG 235


>gi|294494848|ref|YP_003541341.1| phosphoadenosine phosphosulfate reductase [Methanohalophilus mahii
           DSM 5219]
 gi|292665847|gb|ADE35696.1| phosphoadenosine phosphosulfate reductase [Methanohalophilus mahii
           DSM 5219]
          Length = 633

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 12/53 (22%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           C  C +C   CP  AI IE+                   KC +CG C E CPV
Sbjct: 587 CTGCGVCIGKCPHNAIRIENKIA------------YIGDKCTHCGKCIEVCPV 627


>gi|293390123|ref|ZP_06634457.1| electron transport complex protein RnfC [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290950657|gb|EFE00776.1| electron transport complex protein RnfC [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 790

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 36/112 (32%), Gaps = 13/112 (11%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E+ CI C  C   CP + +  +               +  +  CI CG+C   CP  
Sbjct: 372 PEEEKNCIRCSACSDACPVK-LMPQQLYWFARSEDHEKSEEYSLKDCIECGVCAYVCPSH 430

Query: 117 AIVEGPNFEFATETRQEL----YYDKERLL-NNGDRWESEIVRNIVTDSPYR 163
            I     F      R++        K  L      R+E    R +  +   R
Sbjct: 431 -IPLIQYF-----RREKAKIWEIKHKAELSGEAKIRFEQRQAR-LEREEQER 475


>gi|255502227|gb|ACU11593.1| HydII [Thermoanaerobacterium saccharolyticum]
          Length = 436

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 27/83 (32%), Gaps = 18/83 (21%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
                     +RC  C  C   CP +AI +  G              I   KCI CG C 
Sbjct: 1   MYFHSVTLDRDRCKGCTNCIKRCPTEAIRVRDGKA-----------KIIKEKCIDCGECV 49

Query: 111 EACPVDA-------IVEGPNFEF 126
             CP  A       I    N+++
Sbjct: 50  RVCPYHAKVVVTDDIGMMENYKY 72


>gi|253682030|ref|ZP_04862827.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum
           D str. 1873]
 gi|253561742|gb|EES91194.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum
           D str. 1873]
          Length = 411

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/110 (14%), Positives = 33/110 (30%), Gaps = 7/110 (6%)

Query: 15  EFVGAFFLCLRY-FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
           + +      ++   F+    +     K            +       ++C+ C  C   C
Sbjct: 295 DMISGLSYYMKEKGFEKLEDMVGLALKNIIPAEELDRDYIVYPEFNMDKCVGCGRCYISC 354

Query: 74  PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                    G +  +         ++  KC+ C LC   CP+  I +G  
Sbjct: 355 YDG------GHQAIEWDLENRLPVLNEEKCVGCHLCSNVCPIQCINKGKI 398


>gi|221195321|ref|ZP_03568377.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Atopobium
           rimae ATCC 49626]
 gi|221185224|gb|EEE17615.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Atopobium
           rimae ATCC 49626]
          Length = 343

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 15/66 (22%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           + +Y   ++ CI C  C   C       ++                    CI CG C +A
Sbjct: 237 ILQYRVDKDACIKCGKCARTCKMDVDITKNNASLE---------------CIRCGECIKA 281

Query: 113 CPVDAI 118
           CPV AI
Sbjct: 282 CPVHAI 287


>gi|218661813|ref|ZP_03517743.1| NADH-ubiquinone oxidoreductase protein, chain G [Rhizobium etli
           IE4771]
          Length = 241

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 3/80 (3%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           +   S   R    +    N   RCI C+ C  +C      +  G            ++  
Sbjct: 128 RVFHSEDIRLSPVIIMNVN---RCIQCQRCVRMCEEVVGAVALGTVEKGMDTAVTGFEGS 184

Query: 100 MIKCIYCGLCQEACPVDAIV 119
           +  C  CG C E CPV A++
Sbjct: 185 LASCDQCGNCVEVCPVGALM 204


>gi|218461919|ref|ZP_03502010.1| NADH-ubiquinone oxidoreductase protein, chain G [Rhizobium etli Kim
           5]
          Length = 209

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 3/80 (3%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           +   S   R    +    N   RCI C+ C  +C      +  G            ++  
Sbjct: 128 RVFHSEDIRLSPVIIMNVN---RCIQCQRCVRMCEEVVGAVALGTVEKGMDTAVTGFEGS 184

Query: 100 MIKCIYCGLCQEACPVDAIV 119
           +  C  CG C E CPV A++
Sbjct: 185 LASCDQCGNCVEVCPVGALM 204


>gi|145299789|ref|YP_001142630.1| glutamate synthase (NADPH) small subunit [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142852561|gb|ABO90882.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Aeromonas salmonicida subsp. salmonicida A449]
          Length = 533

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 21/89 (23%), Gaps = 3/89 (3%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P           G            RC +C  C                          Y
Sbjct: 446 PAWARDDFGEIIGGLDETAARYEAARCYSCGNC--FECDGCYGSCPEQAIE-KLGPGKGY 502

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
            +D  +C  CG C + CP  AI      E
Sbjct: 503 QVDATRCTGCGACHDQCPCHAIELRQPEE 531


>gi|123475006|ref|XP_001320683.1| 4Fe-4S binding domain containing protein [Trichomonas vaginalis G3]
 gi|121903493|gb|EAY08460.1| 4Fe-4S binding domain containing protein [Trichomonas vaginalis G3]
          Length = 496

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 6/65 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E CI C  C  +CPA  +T     +          + +    C+ CG C E CP  + 
Sbjct: 130 NHETCIDCFKCVDVCPAHVLTKGDHLQT------FGYFGLKESGCLSCGNCLEVCPTKSF 183

Query: 119 VEGPN 123
               N
Sbjct: 184 SITDN 188


>gi|114321660|ref|YP_743343.1| formate dehydrogenase, alpha subunit [Alkalilimnicola ehrlichii
           MLHE-1]
 gi|114228054|gb|ABI57853.1| NAD-dependent formate dehydrogenase catalytic subunit /
           NAD-dependent formate dehydrogenase iron-sulfur protein
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 927

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 30/88 (34%), Gaps = 10/88 (11%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            +P              ++R        CI C  C   C  +    +     H G R  V
Sbjct: 128 RFPARSQPAPDASHPAMSVRLD-----ACIQCTRCLRACREE-QANDVIGMAHRGDRTAV 181

Query: 95  RYD----IDMIKCIYCGLCQEACPVDAI 118
            +D    +    C+ CG C +ACP  A+
Sbjct: 182 VFDLADPMGRSSCVACGECVQACPTGAL 209


>gi|328952785|ref|YP_004370119.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
 gi|328453109|gb|AEB08938.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
          Length = 353

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 3/67 (4%)

Query: 55  RYPNGEERCIACKLCEAIC---PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
                  +CI C  C   C                H+       +      C++CG C +
Sbjct: 142 MIVRDFSKCIMCGRCVRACNERQVNLAIQIGYRGSHNKIVAKCDFPYFNSDCVFCGTCVQ 201

Query: 112 ACPVDAI 118
           ACPV A+
Sbjct: 202 ACPVGAL 208


>gi|320353843|ref|YP_004195182.1| fumarate reductase/succinate dehydrogenase flavoprotein
           domain-containing protein [Desulfobulbus propionicus DSM
           2032]
 gi|320122345|gb|ADW17891.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Desulfobulbus propionicus DSM 2032]
          Length = 1027

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 29/86 (33%), Gaps = 16/86 (18%)

Query: 57  PNGEERCIACKLCEAICP------AQAI-TIESGPRCHDGTRRTVRYDIDMIKCIY---- 105
                +CIAC  C   CP        A  T              ++Y ID   CI+    
Sbjct: 104 YVDTAKCIACGQCSGSCPKSVDDSFNANITKRKAIYIKYPQAVPLKYQIDPQACIHLNNA 163

Query: 106 --CGLCQEACPVDAIVEGP---NFEF 126
             CGLC E CP  AI       + E 
Sbjct: 164 EKCGLCAEICPPGAINFADRERDHEL 189



 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 2/58 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               C  C LC  +CP QAIT+          R+TV   ID + C  CG+CQ  CP  
Sbjct: 942 NPILCDGCGLCVEVCPYQAITLAEYRDESGEPRKTVH--IDQVLCKGCGICQGTCPKR 997



 Score = 40.9 bits (94), Expect = 0.064,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
           ++ I C  CGLC E CP  AI      + + E R+ ++ D
Sbjct: 941 VNPILCDGCGLCVEVCPYQAITLAEYRDESGEPRKTVHID 980


>gi|313157716|gb|EFR57127.1| 4Fe-4S binding domain protein [Alistipes sp. HGB5]
          Length = 384

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 6/57 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
            +  C  C  C   CP Q I               +   +D  +C+ CGLC++ CPV
Sbjct: 6   NKRDCCGCNACVQKCPQQCIGQSEDAEG------FIYPQVDKARCVGCGLCEKVCPV 56


>gi|322421699|ref|YP_004200922.1| Fis family sigma-54 specific transcriptional regulator [Geobacter
           sp. M18]
 gi|320128086|gb|ADW15646.1| sigma54 specific transcriptional regulator, Fis family [Geobacter
           sp. M18]
          Length = 760

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 11/63 (17%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ++C  C  C   CP +AI +E               +I   +CI CG C   CP  A V 
Sbjct: 9   DQCRKCYSCVRSCPVKAIKVEK-----------SYTEIIFERCIGCGNCLSNCPQHAKVI 57

Query: 121 GPN 123
             N
Sbjct: 58  ADN 60


>gi|254578922|ref|XP_002495447.1| ZYRO0B11616p [Zygosaccharomyces rouxii]
 gi|238938337|emb|CAR26514.1| ZYRO0B11616p [Zygosaccharomyces rouxii]
          Length = 607

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 4/76 (5%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +RC   K C   C      +++G  C + T  +    I  + CI CG+C + CP  AI
Sbjct: 12  NPDRCKP-KKCRQECRRSCPVVKTGKLCIEVTPASKIAFISEVLCIGCGICVKKCPFGAI 70

Query: 119 VEGP---NFEFATETR 131
                  N E     R
Sbjct: 71  NIINLPTNLEQHVTHR 86


>gi|237653653|ref|YP_002889967.1| electron transport complex, RnfABCDGE type, C subunit [Thauera sp.
           MZ1T]
 gi|237624900|gb|ACR01590.1| electron transport complex, RnfABCDGE type, C subunit [Thauera sp.
           MZ1T]
          Length = 481

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 2/66 (3%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+ C  C  +CP   + +E   R   G R     ++ M  C+ CG C   CP   +    
Sbjct: 368 CLHCGRCVDVCPVGLVPLELAARVRAG-RIDDAAELGMGDCLSCGCCAYVCPAH-LPLAH 425

Query: 123 NFEFAT 128
            F +A 
Sbjct: 426 LFNYAK 431



 Score = 38.2 bits (87), Expect = 0.40,   Method: Composition-based stats.
 Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 4/39 (10%)

Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERL 141
           C++CG C + CPV  +      E A   R     D   L
Sbjct: 368 CLHCGRCVDVCPVGLVPL----ELAARVRAGRIDDAAEL 402


>gi|182417629|ref|ZP_02948948.1| pyruvate:ferredoxin oxidoreductase [Clostridium butyricum 5521]
 gi|237667867|ref|ZP_04527851.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182378353|gb|EDT75884.1| pyruvate:ferredoxin oxidoreductase [Clostridium butyricum 5521]
 gi|237656215|gb|EEP53771.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 1173

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 28/100 (28%), Gaps = 19/100 (19%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI-----------------ESGPR 85
           TS   +   A+        +CI C  C  +CP  AI                        
Sbjct: 673 TSAYEKRGVAVNVPEWDSSKCIQCNQCAFVCPHAAIRPFLLNEEEANNAPESVKLVPAKA 732

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVD--AIVEGPN 123
                       +  + C  CG C + CP    A+V  P 
Sbjct: 733 LKSEETLQYSIGVTPLDCTGCGNCAQVCPAPGKALVMKPQ 772


>gi|150400805|ref|YP_001324571.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus aeolicus Nankai-3]
 gi|150013508|gb|ABR55959.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           aeolicus Nankai-3]
          Length = 418

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/117 (25%), Positives = 41/117 (35%), Gaps = 14/117 (11%)

Query: 9   SFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKL 68
           S  +L EFV       + +    T      E      R+R    +   P    +CI+C  
Sbjct: 4   SLWYLYEFVR------KKWISNFTCAKTDVESTIPQKRYRKIPVMVELPE---KCISCGA 54

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           C   CP  AI +      +          ID   CI C LC E+CP   +  G   E
Sbjct: 55  CAGACPCFAIEMVKNDEYNK-----ELPVIDDDSCITCALCVESCPTGVLDIGTVKE 106



 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 8/69 (11%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           + Y   E+ CI C++C  +C        S          T    I+   C+ CGLC   C
Sbjct: 306 KCYIVNEDACIGCRICYKVCGVDDTINISSE--------TRMPYINPKLCVRCGLCYNEC 357

Query: 114 PVDAIVEGP 122
           PV+AI    
Sbjct: 358 PVNAIDLTD 366



 Score = 42.0 bits (97), Expect = 0.029,   Method: Composition-based stats.
 Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 4/64 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGT----RRTVRYDIDMIKCIYCGLCQEACP 114
            ++ CI C LC   CP   + I +     DG      +     ID   C+ CGLC+ ACP
Sbjct: 80  DDDSCITCALCVESCPTGVLDIGTVKEDTDGRAFSVPKYTNLIIDEELCVNCGLCKNACP 139

Query: 115 VDAI 118
           VDAI
Sbjct: 140 VDAI 143



 Score = 40.9 bits (94), Expect = 0.062,   Method: Composition-based stats.
 Identities = 27/114 (23%), Positives = 38/114 (33%), Gaps = 11/114 (9%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
            K  T  R             EE C+ C LC+  CP  AI                 + I
Sbjct: 104 VKEDTDGRAFSVPKYTNLIIDEELCVNCGLCKNACPVDAIDYNE-----------KTHYI 152

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEI 152
               CI C  C + CPV   ++  + +   E   +  Y K   L   D +  +I
Sbjct: 153 IDNDCIECMECIKVCPVKDAIKTYDEKLLKEKFDKTQYLKYDRLTKLDNFNEDI 206



 Score = 40.9 bits (94), Expect = 0.069,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 19/53 (35%)

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           A T           R+         KCI CG C  ACP  AI    N E+  E
Sbjct: 23  AKTDVESTIPQKRYRKIPVMVELPEKCISCGACAGACPCFAIEMVKNDEYNKE 75


>gi|86359438|ref|YP_471330.1| formate dehydrogenase, alpha subunit protein [Rhizobium etli CFN
           42]
 gi|86283540|gb|ABC92603.1| formate dehydrogenase, alpha subunit protein [Rhizobium etli CFN
           42]
          Length = 959

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 3/85 (3%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRT--VRYDIDMI 101
                + +   +     +CI C LC   C   Q     +      G+R +  +  +    
Sbjct: 160 KWMPKDESNPYFTYDPSKCIVCSLCVRACEEVQGTFALTIEGRGFGSRVSPGMHENFMDS 219

Query: 102 KCIYCGLCQEACPVDAIVEGPNFEF 126
           +C+ CG C +ACP   + E    E 
Sbjct: 220 ECVSCGACVQACPTATLTEKSVIEI 244


>gi|85858317|ref|YP_460519.1| methyl-viologen-reducing hydrogenase subunit delta [Syntrophus
           aciditrophicus SB]
 gi|85859241|ref|YP_461443.1| methyl-viologen-reducing hydrogenase subunit delta [Syntrophus
           aciditrophicus SB]
 gi|85721408|gb|ABC76351.1| methyl-viologen-reducing hydrogenase, delta subunit [Syntrophus
           aciditrophicus SB]
 gi|85722332|gb|ABC77275.1| methyl-viologen-reducing hydrogenase, delta subunit [Syntrophus
           aciditrophicus SB]
          Length = 243

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 10/61 (16%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
             Y    E+C AC  C   CP  AI                 + I+  KCI CG C  AC
Sbjct: 159 ISYYIDPEKCQACMTCARRCPMDAIISAKKE----------VHIIEQDKCIRCGACFAAC 208

Query: 114 P 114
           P
Sbjct: 209 P 209


>gi|148259850|ref|YP_001233977.1| formate dehydrogenase, alpha subunit [Acidiphilium cryptum JF-5]
 gi|326403222|ref|YP_004283303.1| formate dehydrogenase alpha subunit [Acidiphilium multivorum
           AIU301]
 gi|146401531|gb|ABQ30058.1| formate dehydrogenase alpha subunit [Acidiphilium cryptum JF-5]
 gi|325050083|dbj|BAJ80421.1| formate dehydrogenase alpha subunit [Acidiphilium multivorum
           AIU301]
          Length = 946

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 3/75 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     +G          +       +C+ CG C +
Sbjct: 159 YFQFDPAKCIVCSRCVRACEEVQGTFALTIAGRGFDSKVSPGMEESFFESECVSCGACVQ 218

Query: 112 ACPVDAIVEGPNFEF 126
           ACP   ++E    E 
Sbjct: 219 ACPTATLMETSVVEI 233


>gi|332526726|ref|ZP_08402828.1| RnfABCDGE type electron transport complex subunit B [Rubrivivax
           benzoatilyticus JA2]
 gi|332111129|gb|EGJ11161.1| RnfABCDGE type electron transport complex subunit B [Rubrivivax
           benzoatilyticus JA2]
          Length = 219

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 26/82 (31%), Gaps = 10/82 (12%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E     P    E         E  CI C LC   CP   I   +             + +
Sbjct: 61  EARPLDPAHGAEGPRGLAVVDESWCIGCTLCLKACPVDCIVGANK----------RMHTV 110

Query: 99  DMIKCIYCGLCQEACPVDAIVE 120
               C  CGLC  ACPVD I  
Sbjct: 111 IDALCTGCGLCLPACPVDCITM 132


>gi|301156225|emb|CBW15696.1| fused predicted 4Fe-4S ferredoxin-type protein/conserved protein
           [Haemophilus parainfluenzae T3T1]
          Length = 776

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 1/58 (1%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           P  E+ CI C  C   CP   +  +               +  +  CI CG+C   CP
Sbjct: 372 PEPEQSCIRCSACSDACPVN-LMPQQLYWYARSEDHQKSEEYCLKDCIECGVCAYVCP 428


>gi|300088596|ref|YP_003759118.1| reductive dehalogenase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299528329|gb|ADJ26797.1| reductive dehalogenase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 455

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/101 (17%), Positives = 29/101 (28%), Gaps = 12/101 (11%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP----RCHDGTRRT 93
           F   +    F            +E C  C  C   CP+ A++ E  P    +     +  
Sbjct: 309 FYMTTMITDFPMAPDKPIDIGLKEFCTTCMKCADACPSGALSFEKEPYWETKGEWNNKGH 368

Query: 94  VRYDIDMIKCIY--------CGLCQEACPVDAIVEGPNFEF 126
             +  +   C+         CG+C   CP          E 
Sbjct: 369 KAWFENSKNCMGFWLETNTLCGICFRECPFSKYDAANVHEL 409


>gi|225572040|ref|ZP_03780904.1| hypothetical protein RUMHYD_00334 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040475|gb|EEG50721.1| hypothetical protein RUMHYD_00334 [Blautia hydrogenotrophica DSM
           10507]
          Length = 584

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 11/55 (20%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           C  C  C   C  +AI++++               I   +CIYCG C E CP +A
Sbjct: 11  CRHCYKCVRNCEVKAISVQNQQA-----------RIIEEECIYCGHCLEVCPQNA 54


>gi|197119283|ref|YP_002139710.1| iron-sulfur cluster-binding DUF162/cysteine-rich domain-containing
           protein [Geobacter bemidjiensis Bem]
 gi|197088643|gb|ACH39914.1| iron-sulfur cluster-binding DUF162/cysteine-rich domain protein
           [Geobacter bemidjiensis Bem]
          Length = 711

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 33/101 (32%), Gaps = 14/101 (13%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYD------ 97
           R E A         +CI C  C  +CP           S      GT  T  +D      
Sbjct: 291 RTEMAQDPKFKQALQCIRCGSCLNVCPIFRLVGGHVFGSIYTGGIGTILTAWFDELKKSE 350

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
                CI CG C+E CP          E   E R+ L  +K
Sbjct: 351 DIQGLCIQCGNCKEVCPGKL----DIPEMIMEIRRRLVLEK 387


>gi|117620985|ref|YP_857665.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117562392|gb|ABK39340.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
          Length = 1181

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 31/123 (25%), Gaps = 18/123 (14%)

Query: 31  KTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES------ 82
             +   P        +   +   A        + C  C  C A CP  AI  +       
Sbjct: 660 PVSAFPPDGTWPVGTTRWEKRNIAKEVPIWQADLCTQCNYCVAACPHSAIRAKVVDKEAL 719

Query: 83  ----------GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
                       +  D   +     +    C  C LC E CP     E        E+R 
Sbjct: 720 EQAPATLDALDVKARDMRGQQYVLQVAPEDCTGCNLCVEVCPAKDRTEPSRKAINMESRL 779

Query: 133 ELY 135
           +  
Sbjct: 780 DHL 782


>gi|20806863|ref|NP_622034.1| ferredoxin 3 [Thermoanaerobacter tengcongensis MB4]
 gi|20515333|gb|AAM23638.1| Ferredoxin 3 [Thermoanaerobacter tengcongensis MB4]
          Length = 81

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 26/62 (41%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +++CI C+ C  +CP     +       +  R      +   KCI C  C E CP +AI
Sbjct: 16  DDKKCIGCRRCVEVCPEDVYELVKREGETNPNREYKSIALYPEKCILCLSCLEICPTNAI 75

Query: 119 VE 120
             
Sbjct: 76  YI 77


>gi|260886835|ref|ZP_05898098.1| ferredoxin hydrogenase [Selenomonas sputigena ATCC 35185]
 gi|330839361|ref|YP_004413941.1| hydrogenase, Fe-only [Selenomonas sputigena ATCC 35185]
 gi|260863434|gb|EEX77934.1| ferredoxin hydrogenase [Selenomonas sputigena ATCC 35185]
 gi|329747125|gb|AEC00482.1| hydrogenase, Fe-only [Selenomonas sputigena ATCC 35185]
          Length = 586

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 3/68 (4%)

Query: 59  GEERCIACKLCEAIC-PAQAITIESGPRCHDGTRRTVRYDIDMI--KCIYCGLCQEACPV 115
              +CI C  C   C   Q I   +     D    T  YD  +    CI CG C   CP 
Sbjct: 148 DPTKCIKCGRCIRACKDVQGIEALNFAGRSDKITVTTAYDSPLEATDCILCGQCSLVCPT 207

Query: 116 DAIVEGPN 123
            AI E  +
Sbjct: 208 GAITEKDD 215


>gi|297568826|ref|YP_003690170.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296924741|gb|ADH85551.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 331

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/100 (19%), Positives = 25/100 (25%), Gaps = 15/100 (15%)

Query: 19  AFFLC----LRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP 74
              +     +    K +      F   S          L R      +C  C  C   C 
Sbjct: 210 GMAITGLFIIGSLVKPRF--FCLFCPMSAFHYIFSRLGLLRLTKNGAKCTRCGNCYRACD 267

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                I               Y+I    C+ CG C E CP
Sbjct: 268 VGIRAIADDLES---------YNIVQDDCMMCGKCIEVCP 298


>gi|225848283|ref|YP_002728446.1| NADH dehydrogenase I subunit G [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644123|gb|ACN99173.1| NADH dehydrogenase i chain g [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 626

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 6/89 (6%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRRT 93
            PFEK      +  ++          RC+ C  C ++C    Q+ ++    R  +     
Sbjct: 128 TPFEKIREEVDWESDY----LEYVSNRCVLCMKCVSVCDNINQSHSLYPLERAFETLIDP 183

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           V+  +D   C  CGLC + CPV AI+  P
Sbjct: 184 VKKPMDTSSCEMCGLCVDICPVGAILFKP 212


>gi|167772589|ref|ZP_02444642.1| hypothetical protein ANACOL_03968 [Anaerotruncus colihominis DSM
           17241]
 gi|167665067|gb|EDS09197.1| hypothetical protein ANACOL_03968 [Anaerotruncus colihominis DSM
           17241]
          Length = 584

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 25/73 (34%), Gaps = 3/73 (4%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---YDIDMIKCIYCGLCQ 110
                 + +CI C+ C A C         GP               ++D + C+ CG C 
Sbjct: 142 VHMVRDDNKCILCRRCVAACAKWQGIGVIGPNERGFNTHIACAFEQNLDEVACVSCGQCI 201

Query: 111 EACPVDAIVEGPN 123
             CP  AI E   
Sbjct: 202 VVCPTGAIYEKDQ 214


>gi|2127962|pir||E64448 heterodisulfide reductase (EC 1.-.-.-) - Methanococcus jannaschii
          Length = 460

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 28/80 (35%), Gaps = 7/80 (8%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAIT-------IESGPRCHDGTRRTVRYDI 98
            F      +     E  C  C  C A+CP +                        + Y I
Sbjct: 31  NFEVTIEKKPRYVDENICTGCGACAAVCPIEVPNEFDLGLGTRKAIYVPFAQAVPLVYTI 90

Query: 99  DMIKCIYCGLCQEACPVDAI 118
           DM  CI CGLC++AC   AI
Sbjct: 91  DMDHCIRCGLCEKACGPGAI 110



 Score = 41.2 bits (95), Expect = 0.043,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 7/71 (9%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
              + R    E+ C  C++C  +CP  AIT              +   ++ + C  CG C
Sbjct: 373 RIEMIRAVVDEDVCGGCQVCAKMCPYNAITYVEKD-------GHLVAQVNDVACKGCGSC 425

Query: 110 QEACPVDAIVE 120
             ACP  A+  
Sbjct: 426 AGACPSGAMQL 436


>gi|145219605|ref|YP_001130314.1| electron transport complex, RnfABCDGE type, C subunit
           [Prosthecochloris vibrioformis DSM 265]
 gi|145205769|gb|ABP36812.1| electron transport complex, RnfABCDGE type, C subunit [Chlorobium
           phaeovibrioides DSM 265]
          Length = 441

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 26/89 (29%), Gaps = 3/89 (3%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
              +++ T+  P  K ++   F     L         CI C  C   CP        G  
Sbjct: 331 MMGRSQFTLEVPITKTTSGILFINNAGLESSRE--RTCIRCGKCIDACPQGLEPWLLG-N 387

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                R        +  C  CG C   CP
Sbjct: 388 EAQFRRLDEAELYGLANCTECGSCTFVCP 416


>gi|332704000|ref|ZP_08424088.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
 gi|332554149|gb|EGJ51193.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio africanus str. Walvis Bay]
          Length = 659

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 23/64 (35%), Gaps = 7/64 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +RCI C  C A CP  AI            R   +  +    C  CG+C   CP  AI
Sbjct: 580 DIKRCIGCGKCIATCPFGAIEAID-------FRGQPKAQVIETVCQGCGICTATCPQGAI 632

Query: 119 VEGP 122
               
Sbjct: 633 QLQH 636



 Score = 40.1 bits (92), Expect = 0.094,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 25/87 (28%), Gaps = 13/87 (14%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGP--------RCHDGTRRTVRYDIDMIKCI---- 104
               E C  C LC   CP++    +                     +  ID   C     
Sbjct: 236 YVNWEACTGCGLCMEKCPSKKAKDDFNEQIGTTTAINIPSPQAIPKKAKIDPEFCRQFTK 295

Query: 105 -YCGLCQEACPVDAIVEGPNFEFATET 130
             CG+C + CP  AI      E   E 
Sbjct: 296 GKCGVCAKICPSGAIEYDQQDEVVGEK 322


>gi|301311164|ref|ZP_07217092.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           sp. 20_3]
 gi|300830738|gb|EFK61380.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           sp. 20_3]
          Length = 310

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 29/97 (29%), Gaps = 16/97 (16%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P  +         +            CI C  C   CP +AIT+ +              
Sbjct: 193 PKSRRIYVSCVNKDKGAAARKACANACIGCGKCAKECPFEAITVTNN-----------VA 241

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
            ID  KC  C  C   CP  AI      E     R+E
Sbjct: 242 YIDYTKCRMCRKCVAVCPTGAI-----HELNFPPRKE 273



 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 28/81 (34%), Gaps = 8/81 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCH--------DGTRRTVRYDIDMIKCIYCGLCQ 110
            EE+C +C  C   CP   I +               +  +           CI CG C 
Sbjct: 167 DEEKCTSCGACVKACPKSIIELRKKGPKSRRIYVSCVNKDKGAAARKACANACIGCGKCA 226

Query: 111 EACPVDAIVEGPNFEFATETR 131
           + CP +AI    N  +   T+
Sbjct: 227 KECPFEAITVTNNVAYIDYTK 247



 Score = 35.5 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 22/65 (33%), Gaps = 9/65 (13%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           N    C+    C   C   AI I            T   ++D  KC  CG C +ACP   
Sbjct: 135 NCSFGCLGYGDCVNACAFDAIHINPT---------TGIAEVDEEKCTSCGACVKACPKSI 185

Query: 118 IVEGP 122
           I    
Sbjct: 186 IELRK 190


>gi|300245743|gb|ADJ93929.1| putative aromatic-degrading BamH [Clostridia bacterium enrichment
           culture clone BF]
          Length = 595

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 10/68 (14%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             L +     E C  C  C  +CP  AI  +              ++ID  KC  C  C 
Sbjct: 536 KKLSKIRIVPEECKKCGACAKVCPVGAIKGKPKE----------LHEIDPEKCTKCEACI 585

Query: 111 EACPVDAI 118
           +AC   AI
Sbjct: 586 KACHFKAI 593



 Score = 40.9 bits (94), Expect = 0.065,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 17/44 (38%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            +          ++  +  I   +C  CG C + CPV AI   P
Sbjct: 524 HVRDKVCPAGVCKKLSKIRIVPEECKKCGACAKVCPVGAIKGKP 567


>gi|268679364|ref|YP_003303795.1| ferredoxin-type protein, NapH/MauN family [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268617395|gb|ACZ11760.1| ferredoxin-type protein, NapH/MauN family [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 279

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 9/73 (12%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G  +L R  +    C +C  C+ +CP          +   G        I   +C  CG 
Sbjct: 201 GRLSLVRVKHDHTVCTSCMKCKEVCP---------EKHVLGIVSKSSGTIVSGECTNCGR 251

Query: 109 CQEACPVDAIVEG 121
           C E C   A+  G
Sbjct: 252 CVEVCESHALFFG 264


>gi|254439390|ref|ZP_05052884.1| dihydroorotate dehydrogenase family protein [Octadecabacter
           antarcticus 307]
 gi|198254836|gb|EDY79150.1| dihydroorotate dehydrogenase family protein [Octadecabacter
           antarcticus 307]
          Length = 434

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 8/95 (8%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI+C  C A C       E          +   + +   +C+ 
Sbjct: 330 QYLNLNYIAKAVINQDDCISCGRCYAAC-------EDTSHQAIAMSQDRTFTVIDEECVA 382

Query: 106 CGLCQEACPV-DAIVEGPNFEFATETRQELYYDKE 139
           C LC + CPV D I         T+ R      KE
Sbjct: 383 CNLCVDVCPVEDCITMVALAPGTTDPRTGKVVQKE 417


>gi|152981034|ref|YP_001352093.1| formate dehydrogenase alpha subunit [Janthinobacterium sp.
           Marseille]
 gi|151281111|gb|ABR89521.1| formate dehydrogenase alpha subunit [Janthinobacterium sp.
           Marseille]
          Length = 946

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 5/78 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID----MIKCIYCGLCQEACP 114
             + CI C  C   C  +    +       G    + +D+D       C+ CG C +ACP
Sbjct: 152 NLDACIQCTRCVRACRDE-QENDVIGLAFRGDHAKIVFDMDDPMGASTCVACGECVQACP 210

Query: 115 VDAIVEGPNFEFATETRQ 132
             A++   +       +Q
Sbjct: 211 TGALMPARDVALNVPDKQ 228


>gi|86160580|ref|YP_467365.1| CoB--CoM heterodisulfide reductase subunit A [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85777091|gb|ABC83928.1| CoB--CoM heterodisulfide reductase subunit A [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 632

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 9/59 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
               C  C +C A CP  A+ I+             +  +    C  CG C  ACP  A
Sbjct: 561 DAALCGGCGMCVAACPFGAMVIDGAD---------GKARVLAGDCRGCGTCAAACPTGA 610



 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 11/67 (16%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRY----------DIDMIKCI-YCGLCQEACP 114
           C  C  +C A      + P      R+ +             +D   C+  C  C  ACP
Sbjct: 244 CLGCAEVCGAACPVELADPPGGGPARKAIHLPYPGCLPHAAVVDRAACLPGCDACAGACP 303

Query: 115 VDAIVEG 121
             A+  G
Sbjct: 304 FGAVRLG 310



 Score = 34.3 bits (77), Expect = 5.8,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 97  DIDMIKCIYCGLCQEACPVDAI 118
           ++D   C  CG+C  ACP  A+
Sbjct: 559 EVDAALCGGCGMCVAACPFGAM 580


>gi|20089546|ref|NP_615621.1| Na+-transporting NADH:ubiquinone oxidoreductase, subunit 1
           [Methanosarcina acetivorans C2A]
 gi|19914459|gb|AAM04101.1| Na+-transporting NADH:ubiquinone oxidoreductase, subunit 1
           [Methanosarcina acetivorans C2A]
          Length = 447

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 20/58 (34%), Gaps = 1/58 (1%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            +    CI C  C  +CP   +          G     R +   + CI CG C   CP
Sbjct: 363 RDEATVCIHCARCVDVCPMNLLPGRIAAMADMGMFDRCR-EYFALNCIECGECAVVCP 419


>gi|328953795|ref|YP_004371129.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfobacca acetoxidans DSM 11109]
 gi|328454119|gb|AEB09948.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfobacca acetoxidans DSM 11109]
          Length = 281

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 12/85 (14%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
               FRGE+  +  P+   RC+ C+ C   C  +A+T  +  +         +  ID  +
Sbjct: 203 VPVMFRGEYIAQVDPD---RCVGCRECLRFCQFEAMTYSTADQ---------KTVIDPRR 250

Query: 103 CIYCGLCQEACPVDAIVEGPNFEFA 127
           C  CG+C+  CP +AI        A
Sbjct: 251 CYGCGVCRSGCPEEAIQLVDRISVA 275


>gi|294340543|emb|CAZ88928.1| Putative Electron transport complex, RnfABCDGE type, B subunit
           (RnfB) [Thiomonas sp. 3As]
          Length = 210

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/109 (23%), Positives = 31/109 (28%), Gaps = 18/109 (16%)

Query: 24  LRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG 83
           L +  +   T   P                 R       CI C LC   CP  AI   S 
Sbjct: 57  LAHLLQRPATALDPSCGTEGPRE--------RAVIDPALCIGCTLCIQACPVDAIAGVSK 108

Query: 84  PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
                       + +    C  C LC   CPVD I      + A  TR 
Sbjct: 109 ----------RMHTVIEDWCTGCALCLPPCPVDCIRMEALTDPALATRS 147


>gi|223984910|ref|ZP_03635015.1| hypothetical protein HOLDEFILI_02314 [Holdemania filiformis DSM
           12042]
 gi|223963121|gb|EEF67528.1| hypothetical protein HOLDEFILI_02314 [Holdemania filiformis DSM
           12042]
          Length = 854

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/102 (24%), Positives = 33/102 (32%), Gaps = 14/102 (13%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC--EAICPAQAIT 79
           + L + FK       P      +    G    R       +C  C++C  E  CP  A  
Sbjct: 675 IVLPHKFKLAV-GGCPNNCVKPNLNDLGIVGQRIPEINMAKCRGCQVCQIEKNCPIGAAK 733

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           +  G              ID   C +CG C   CP  AI E 
Sbjct: 734 LIDGK-----------LQIDADLCNHCGRCVSKCPFKAIEES 764


>gi|193212229|ref|YP_001998182.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing
           protein [Chlorobaculum parvum NCIB 8327]
 gi|193085706|gb|ACF10982.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Chlorobaculum parvum NCIB 8327]
          Length = 1178

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 21/73 (28%), Gaps = 16/73 (21%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGP----------------RCHDGTRRTVRYDIDMI 101
              E CI C  C  +CP  AI I+                   +  +         +   
Sbjct: 682 WEPELCIECGKCSMVCPHAAIRIKVYEPEHLENAPATFKSLEAKAKNWEGMRYTVQVAPE 741

Query: 102 KCIYCGLCQEACP 114
            C  C LC   CP
Sbjct: 742 DCTGCQLCVNVCP 754



 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 17/50 (34%), Gaps = 3/50 (6%)

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWE 149
              CI CG C   CP  AI     +E   E  +      + L      WE
Sbjct: 684 PELCIECGKCSMVCPHAAIRI-KVYEP--EHLENAPATFKSLEAKAKNWE 730


>gi|167757158|ref|ZP_02429285.1| hypothetical protein CLORAM_02708 [Clostridium ramosum DSM 1402]
 gi|237735753|ref|ZP_04566234.1| 4Fe-4S ferredoxin [Mollicutes bacterium D7]
 gi|167703333|gb|EDS17912.1| hypothetical protein CLORAM_02708 [Clostridium ramosum DSM 1402]
 gi|229381498|gb|EEO31589.1| 4Fe-4S ferredoxin [Coprobacillus sp. D7]
          Length = 260

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 37/95 (38%), Gaps = 21/95 (22%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            YP+++G T  +FR        P   E+C  C +C  +CP  AI IE     +       
Sbjct: 169 KYPYKEGGTGGKFR--------PETNEQCSGCGVCVNMCPTNAIDIEDCKTIN------- 213

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
                   CI C  C   CPV A     N E+ T 
Sbjct: 214 ------NDCIACFRCIRICPVHAKSMNNNQEYQTF 242


>gi|154495355|ref|ZP_02034360.1| hypothetical protein PARMER_04412 [Parabacteroides merdae ATCC
           43184]
 gi|154085279|gb|EDN84324.1| hypothetical protein PARMER_04412 [Parabacteroides merdae ATCC
           43184]
          Length = 601

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 59  GEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
              +CI C+ CE +C       A+T  +       +    R DI    C YCG C   CP
Sbjct: 153 NMNKCIMCRRCETMCNNIQTVGALTAVNRGFNAAVSTAFER-DIAGSTCSYCGQCVSVCP 211

Query: 115 VDAI 118
           V+A+
Sbjct: 212 VNAL 215


>gi|14717798|gb|AAB18330.2| formate dehydrogenase alpha subunit [Moorella thermoacetica]
          Length = 893

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 16/102 (15%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP------AQAITIESGPRCHDGT 90
           P ++            +R Y     +CI C  C   C          +  +        T
Sbjct: 124 PVKREELPVLKENPFIVRDY----NKCIVCGRCVRACQEVQVQRVVDLVGKGSAARVGAT 179

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVE------GPNFEF 126
           +      ++   C++CG C + CPV A+ E      G  +EF
Sbjct: 180 KAGAEVSLEEGGCVFCGNCVQVCPVGALTEKAGLGQGREWEF 221



 Score = 35.5 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 18/81 (22%), Gaps = 8/81 (9%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI-- 98
                  R            E C+ C+                       +R     +  
Sbjct: 76  TPVIEEMRKGIIEMLLSLHPEDCLTCEKAGNCQLQDCAYTYGVKHGELPVKREELPVLKE 135

Query: 99  ------DMIKCIYCGLCQEAC 113
                 D  KCI CG C  AC
Sbjct: 136 NPFIVRDYNKCIVCGRCVRAC 156



 Score = 33.9 bits (76), Expect = 6.8,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 4/46 (8%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           C+ C  C  +CP  A+T     +   G  R   +      C YCG+
Sbjct: 192 CVFCGNCVQVCPVGALT----EKAGLGQGREWEFKKVRSICSYCGV 233


>gi|55377023|ref|YP_134873.1| ferredoxin [Haloarcula marismortui ATCC 43049]
 gi|55229748|gb|AAV45167.1| ferredoxin [Haloarcula marismortui ATCC 43049]
          Length = 109

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 24/69 (34%), Gaps = 2/69 (2%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                  + CIA   C   CP         P   +   +         +CI C LC + C
Sbjct: 37  THVAVDFDICIADGACLEDCPVDVFEWVDTPDHPESEIKADPA--HEDQCIDCMLCVDVC 94

Query: 114 PVDAIVEGP 122
           PVDAI   P
Sbjct: 95  PVDAIDVDP 103


>gi|73540325|ref|YP_294845.1| formate dehydrogenase, alpha subunit [Ralstonia eutropha JMP134]
 gi|72117738|gb|AAZ60001.1| Formate dehydrogenase, alpha subunit [Ralstonia eutropha JMP134]
          Length = 956

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 21/70 (30%), Gaps = 3/70 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     SG                   C+ CG C +
Sbjct: 161 YFTYDPSKCIVCNRCVRACEETQGTFALTISGRGFDSRVSPGTSQSFMESDCVSCGACVQ 220

Query: 112 ACPVDAIVEG 121
           ACP   + E 
Sbjct: 221 ACPTATLTET 230


>gi|51246475|ref|YP_066359.1| glutamate synthase, alpha subunit [Desulfotalea psychrophila LSv54]
 gi|50877512|emb|CAG37352.1| related to glutamate synthase, alpha subunit [Desulfotalea
           psychrophila LSv54]
          Length = 546

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/118 (22%), Positives = 43/118 (36%), Gaps = 22/118 (18%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK----------- 102
               + E+RC  C  C  ICP  AI++    +         +      +           
Sbjct: 21  WIIEHREDRCTLCGKCTTICPKGAISLSYRRQRLPKLDVFSKKRSSDYRTFTGIRQSTDL 80

Query: 103 ---CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIV 157
              CI CG+C   CP +AI    N     E R + +++      NG+ ++    RNI 
Sbjct: 81  AHACIGCGMCAMVCPNEAITPVANDN---EHRSQFFHN-----INGEPYKRGGRRNIS 130


>gi|148265505|ref|YP_001232211.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing
           protein [Geobacter uraniireducens Rf4]
 gi|146399005|gb|ABQ27638.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Geobacter uraniireducens Rf4]
          Length = 1186

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 24/98 (24%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP-------- 84
           T    FEK + +               E+ CI C +C  +CP  AI +++ P        
Sbjct: 670 TATSQFEKRNIAVDIPVW--------DEKLCIQCAICSFVCPHAAIRVKAYPDECLKGAP 721

Query: 85  --------RCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                   R  +     + + +    C  CG C   CP
Sbjct: 722 ATFKSTDSRIAEVKEMKITFQVAPEDCTGCGACAHNCP 759


>gi|332981470|ref|YP_004462911.1| methyl-viologen-reducing hydrogenase subunit delta [Mahella
           australiensis 50-1 BON]
 gi|332699148|gb|AEE96089.1| methyl-viologen-reducing hydrogenase delta subunit [Mahella
           australiensis 50-1 BON]
          Length = 499

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 9/62 (14%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           +C  C  C   CP  A+ +               YD+    C  CG+C   CP +AI   
Sbjct: 310 KCSLCLTCLRFCPHGALHVSDDMPS------MAVYDMA---CQGCGICGAVCPAEAINLA 360

Query: 122 PN 123
            N
Sbjct: 361 DN 362


>gi|312880247|ref|ZP_07740047.1| protein of unknown function DUF362 [Aminomonas paucivorans DSM
           12260]
 gi|310783538|gb|EFQ23936.1| protein of unknown function DUF362 [Aminomonas paucivorans DSM
           12260]
          Length = 387

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 13/81 (16%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
           F             ALR        C+ C++C+ +CP  A+  + GP             
Sbjct: 304 FIPTPLRGFAHRWVALRP-QLERSACVRCRVCQEVCPVDALAWDDGPVVD---------- 352

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
               +C+ C  C E CP  A+
Sbjct: 353 --SNRCVQCLCCHEMCPTGAM 371



 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           R        +R  ++   C+ C +CQE CPVDA+    
Sbjct: 310 RGFAHRWVALRPQLERSACVRCRVCQEVCPVDALAWDD 347


>gi|303243539|ref|ZP_07329881.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
 gi|302486100|gb|EFL49022.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
          Length = 456

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 28/80 (35%), Gaps = 7/80 (8%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAIT-------IESGPRCHDGTRRTVRYDI 98
            F      +     E+ C  C  C   CP +                        + Y I
Sbjct: 27  NFEVTVEKKPRYVDEDTCTGCGACAGACPIEVPNGFDLGLGTRKAIYVPFAQAVPLVYTI 86

Query: 99  DMIKCIYCGLCQEACPVDAI 118
           DM  CI+CGLC++AC   AI
Sbjct: 87  DMEHCIHCGLCEKACGPGAI 106



 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 7/70 (10%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             + R    E  C  C++C  +CP  AI+ +            +   +D + C  CG C 
Sbjct: 370 IEMIRACVDENVCGGCEICGKMCPYHAISYKE-------IDGHLIAQVDDVACKGCGACA 422

Query: 111 EACPVDAIVE 120
            ACP  A+  
Sbjct: 423 GACPSGAMQL 432


>gi|222056361|ref|YP_002538723.1| glutamate synthase (NADPH) [Geobacter sp. FRC-32]
 gi|221565650|gb|ACM21622.1| Glutamate synthase (NADPH) [Geobacter sp. FRC-32]
          Length = 509

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 19/64 (29%), Gaps = 9/64 (14%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           +CI CK+C   C     +                       CI C  C   CP  AI   
Sbjct: 21  KCIRCKVCVRQCSYGVHSYVEQDNVLIEDN---------TSCIGCRRCSALCPTGAITIR 71

Query: 122 PNFE 125
            N E
Sbjct: 72  SNEE 75


>gi|163795953|ref|ZP_02189916.1| putative glutamate synthase small subunit [alpha proteobacterium
           BAL199]
 gi|159178708|gb|EDP63246.1| putative glutamate synthase small subunit [alpha proteobacterium
           BAL199]
          Length = 603

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 32/107 (29%), Gaps = 20/107 (18%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ--------------------A 77
             + +     R  +   +     + CI C  C  ICP                      A
Sbjct: 484 DVQLAWKEAQRCLNCDIQTVFTPQLCIECDACVDICPMDSISFTDNGDESELRGRLSAPA 543

Query: 78  ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           + +       DG +       D   C++CGLC E CP  A      F
Sbjct: 544 LNLTQDIYVADGLKTGRVMAKDEDVCLHCGLCAERCPTGAWDMRKYF 590


>gi|187477321|ref|YP_785345.1| NAD-dependent formate dehydrogenase subunit alpha [Bordetella avium
           197N]
 gi|115421907|emb|CAJ48427.1| NAD-dependent formate dehydrogenase alpha subunit [Bordetella avium
           197N]
          Length = 953

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 21/69 (30%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     +G                   C+ CG C +
Sbjct: 162 YFTYDPSKCIVCNRCVRACEETQGTFALTIAGKGFESRVSPGQSQSFMESDCVSCGACVQ 221

Query: 112 ACPVDAIVE 120
           ACP   + E
Sbjct: 222 ACPTATLQE 230


>gi|330836325|ref|YP_004410966.1| hydrogenase, Fe-only [Spirochaeta coccoides DSM 17374]
 gi|329748228|gb|AEC01584.1| hydrogenase, Fe-only [Spirochaeta coccoides DSM 17374]
          Length = 577

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 25/93 (26%), Gaps = 6/93 (6%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR-- 91
           +  P+E+                     +CI C  C  +C                    
Sbjct: 119 LELPYERRPAPT---KWDHSFPLFRDAAKCIKCMRCIQVCDKIQGLNIWDLVGTGSRTTV 175

Query: 92  -RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
             +    I    C  CG C   CPV A+ E  +
Sbjct: 176 DVSFSRKITDADCALCGQCITHCPVGALRERDD 208


>gi|330830241|ref|YP_004393193.1| RnfABCDGE type electron transport complex subunit C [Aeromonas
           veronii B565]
 gi|328805377|gb|AEB50576.1| Electron transport complex, RnfABCDGE type, C subunit [Aeromonas
           veronii B565]
          Length = 903

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 10/74 (13%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACPVD 116
           + CI C  C       A      P+      R   YD    ++++ CI CG C   CP  
Sbjct: 375 QPCIRCSACA-----DACPATLLPQELYWYSRAKEYDKAEKLNLMDCIECGACAWVCP-S 428

Query: 117 AIVEGPNFEFATET 130
            I     ++ A + 
Sbjct: 429 EIPLVQYYKIAKDD 442


>gi|319957481|ref|YP_004168744.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Nitratifractor salsuginis DSM 16511]
 gi|319419885|gb|ADV46995.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Nitratifractor salsuginis DSM 16511]
          Length = 149

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 27/84 (32%), Gaps = 14/84 (16%)

Query: 37  PFEKGST----SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
           P E+  +             + +     + CI C+ C   C          P     +R 
Sbjct: 47  PEERPYSDFSSYTATVASWRVIKPVYNRDICIDCQNCWVWC----------PDTSIISRD 96

Query: 93  TVRYDIDMIKCIYCGLCQEACPVD 116
                ID   C  CG+C E CP +
Sbjct: 97  KQMLGIDYDHCKGCGVCVEVCPTN 120


>gi|321250193|ref|XP_003191722.1| iron-sulfur protein required for ribosome biogenesis and
           translation initiation; Rli1p [Cryptococcus gattii
           WM276]
 gi|317458189|gb|ADV19935.1| Iron-sulfur protein required for ribosome biogenesis and
           translation initiation, putative; Rli1p [Cryptococcus
           gattii WM276]
          Length = 603

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 3/68 (4%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP---N 123
           K C   C      ++ G  C +      +  I    CI CG+C + CP +AI       N
Sbjct: 19  KRCRQECKRSCPVVKMGKLCIEVNPSDKKAFISEELCIGCGICVKKCPFEAIQILNLPTN 78

Query: 124 FEFATETR 131
            E     R
Sbjct: 79  LESHVTHR 86


>gi|313673825|ref|YP_004051936.1| NADH:ubiquinone oxidoreductase, subunit g, iron-sulfur binding
           protein [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940581|gb|ADR19773.1| NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding
           protein [Calditerrivibrio nitroreducens DSM 19672]
          Length = 737

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 29/85 (34%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
            E   +    +         +    C+ C+ C  IC                    V   
Sbjct: 120 EESVKSQKPNKPIFDWNMIIHDANLCVLCERCVKICHEITGNSALKIDNRGFNNLIVPSK 179

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
            D + C +CGLC + CPV A+++ P
Sbjct: 180 GDTLNCDFCGLCVDYCPVGALLDKP 204


>gi|302344621|ref|YP_003809150.1| pyruvate ferredoxin/flavodoxin oxidoreductase, subunit delta
           [Desulfarculus baarsii DSM 2075]
 gi|301641234|gb|ADK86556.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Desulfarculus baarsii DSM 2075]
          Length = 109

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 8/72 (11%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           RR     E+CI C LC  +CP  A + +     +               C  CG+C + C
Sbjct: 36  RRPVTDREKCIKCGLCYILCPDMAFSPDPNAEGYYNWDGY--------YCKGCGICVKEC 87

Query: 114 PVDAIVEGPNFE 125
           P DAI      E
Sbjct: 88  PKDAISWQEEKE 99


>gi|294101032|ref|YP_003552890.1| Cobyrinic acid ac-diamide synthase [Aminobacterium colombiense DSM
           12261]
 gi|293616012|gb|ADE56166.1| Cobyrinic acid ac-diamide synthase [Aminobacterium colombiense DSM
           12261]
          Length = 281

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 10/61 (16%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RC  C +C   C   A+                   ++M  C  CG+C+  CP  AI + 
Sbjct: 66  RCKGCGVCADNCAFGALNQFGTHAPV----------VNMQLCHGCGVCELVCPQKAIKDS 115

Query: 122 P 122
            
Sbjct: 116 K 116



 Score = 34.3 bits (77), Expect = 5.3,   Method: Composition-based stats.
 Identities = 8/36 (22%), Positives = 13/36 (36%)

Query: 84  PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
                     V   I+  +C  CG+C + C   A+ 
Sbjct: 48  KNPKKENVYKVVPQIEAARCKGCGVCADNCAFGALN 83


>gi|294496342|ref|YP_003542835.1| electron transport complex, RnfABCDGE type, C subunit
           [Methanohalophilus mahii DSM 5219]
 gi|292667341|gb|ADE37190.1| electron transport complex, RnfABCDGE type, C subunit
           [Methanohalophilus mahii DSM 5219]
          Length = 451

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 1/58 (1%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            +  + CI C  C  +CP   I        + G R      + +  CI CG C   CP
Sbjct: 355 KDISKDCIHCARCVDVCPVDLIPNRIAALSNQG-RFDECRQMHIENCIECGRCSSVCP 411



 Score = 34.7 bits (78), Expect = 4.5,   Method: Composition-based stats.
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 102 KCIYCGLCQEACPVDAIV 119
            CI+C  C + CPVD I 
Sbjct: 360 DCIHCARCVDVCPVDLIP 377


>gi|239905180|ref|YP_002951919.1| quinone-interacting membrane-bound oxidoreductase complex subunit B
           [Desulfovibrio magneticus RS-1]
 gi|239795044|dbj|BAH74033.1| quinone-interacting membrane-bound oxidoreductase complex subunit B
           [Desulfovibrio magneticus RS-1]
          Length = 763

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 21/70 (30%), Gaps = 10/70 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L        RC  CK C   CP  A+  +                 +  +C  CG C  A
Sbjct: 546 LSYPVFNFVRCTQCKRCTEECPFGALDDDEKGTPKP----------NPTRCRRCGTCMGA 595

Query: 113 CPVDAIVEGP 122
           CP   I    
Sbjct: 596 CPERVISFDN 605


>gi|254477098|ref|ZP_05090484.1| 4Fe-4S binding domain protein [Ruegeria sp. R11]
 gi|214031341|gb|EEB72176.1| 4Fe-4S binding domain protein [Ruegeria sp. R11]
          Length = 390

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 29/87 (33%), Gaps = 15/87 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              RC  CK C  ICP QA+ +E                +    C+ CGLC   C  DA+
Sbjct: 222 DATRCEHCKACTWICPTQALKLEDADVG---------LVLAEPDCVQCGLCVSICESDAL 272

Query: 119 VEGPNFEFATETRQELYYDKERLLNNG 145
              P                ++L   G
Sbjct: 273 SLSPRLRLVGAD------TPQQLEEGG 293


>gi|153872669|ref|ZP_02001494.1| Electron transport complex protein rnfC [Beggiatoa sp. PS]
 gi|152070866|gb|EDN68507.1| Electron transport complex protein rnfC [Beggiatoa sp. PS]
          Length = 446

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 29/104 (27%), Gaps = 6/104 (5%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG-----EERCIACKLCE 70
           F G      R        +  P               L           E  CI C  C 
Sbjct: 324 FCGGLKETTRSVIMGGPMMGMPIASLDVPILKGSSGILAFTDEETGKPKEYSCIHCGRCV 383

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
             CP   +      R     R T   D +++ C+ CG C  +CP
Sbjct: 384 EACPHF-LNPSRLARLSKKRRYTEMTDYNLMDCVECGACTFSCP 426


>gi|121535367|ref|ZP_01667179.1| Glutamate synthase (NADPH) [Thermosinus carboxydivorans Nor1]
 gi|121306059|gb|EAX46989.1| Glutamate synthase (NADPH) [Thermosinus carboxydivorans Nor1]
          Length = 498

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 21/66 (31%), Gaps = 12/66 (18%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           + +E C+ C  C   C   A+  E                     C+ C  C   CP +A
Sbjct: 11  HIDETCVRCGRCARECSFGALKFEGRVIADHKN------------CVACHRCVTTCPAEA 58

Query: 118 IVEGPN 123
           I    N
Sbjct: 59  ITITKN 64


>gi|119944508|ref|YP_942188.1| electron transport complex, RnfABCDGE type, B subunit [Psychromonas
           ingrahamii 37]
 gi|119863112|gb|ABM02589.1| electron transport complex, RnfABCDGE type, B subunit [Psychromonas
           ingrahamii 37]
          Length = 184

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 10/63 (15%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C   CP  AI   +             + +   +C  C LC E CP D I  
Sbjct: 111 DECIGCTKCIQACPVDAILGAT----------RQMHTVITDECTGCELCVEPCPTDCIDM 160

Query: 121 GPN 123
            P 
Sbjct: 161 LPI 163



 Score = 35.5 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           I   +CI C  C +ACPVDAI
Sbjct: 108 IREDECIGCTKCIQACPVDAI 128


>gi|89055203|ref|YP_510654.1| dihydropyrimidine dehydrogenase [Jannaschia sp. CCS1]
 gi|88864752|gb|ABD55629.1| dihydroorotate oxidase B, catalytic subunit / dihydrouracil
           dehydrogenase (NAD+) / dihydropyrimidine dehydrogenase
           (NADP+) [Jannaschia sp. CCS1]
          Length = 434

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 8/76 (10%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI C  C A C       E              +++   +C+ 
Sbjct: 329 QYLNLNYVAKAQINQDDCIKCGRCYAAC-------EDTSHQAISMSADRVFEVIDAECVA 381

Query: 106 CGLCQEACPV-DAIVE 120
           C LC   CPV + I  
Sbjct: 382 CNLCVNVCPVENCITM 397


>gi|3724145|emb|CAA11235.1| NAD-dependent formate dehydrogenase alpha subunit [Ralstonia
           eutropha H16]
          Length = 959

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 21/70 (30%), Gaps = 3/70 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     SG                   C+ CG C +
Sbjct: 165 YFTYDPSKCIVCNRCVRACEETQGTFALTISGRGFDSRVSPGTSQSFMESDCVSCGACVQ 224

Query: 112 ACPVDAIVEG 121
           ACP   + E 
Sbjct: 225 ACPTATLTET 234


>gi|27366363|ref|NP_761891.1| electron transport complex protein RnfC [Vibrio vulnificus CMCP6]
 gi|27362564|gb|AAO11418.1| Electron transport complex protein rnfC [Vibrio vulnificus CMCP6]
          Length = 919

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 20/57 (35%), Gaps = 9/57 (15%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI----KCIYCGLCQEACP 114
            CI C  C   CPA  +     P+      +   +D         CI CG C   CP
Sbjct: 377 ECIRCGACAEACPASLL-----PQQLQWHAKAEEFDKCEELNLKDCIECGACAFVCP 428



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 19/43 (44%)

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           +  A     ++       TR+ +      ++CI CG C EACP
Sbjct: 347 LPHANVPITKTSNCILAPTRKEISPAGYEMECIRCGACAEACP 389


>gi|37679374|ref|NP_933983.1| electron transport complex protein RnfC [Vibrio vulnificus YJ016]
 gi|37198117|dbj|BAC93954.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Vibrio
           vulnificus YJ016]
          Length = 885

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 20/57 (35%), Gaps = 9/57 (15%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI----KCIYCGLCQEACP 114
            CI C  C   CPA  +     P+      +   +D         CI CG C   CP
Sbjct: 377 ECIRCGACAEACPASLL-----PQQLQWHAKAEEFDKCEELNLKDCIECGACAFVCP 428



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 19/43 (44%)

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           +  A     ++       TR+ +      ++CI CG C EACP
Sbjct: 347 LPHANVPITKTSNCILAPTRKEISPAGYEMECIRCGACAEACP 389


>gi|332981823|ref|YP_004463264.1| Fe-S cluster domain-containing protein [Mahella australiensis 50-1
           BON]
 gi|332699501|gb|AEE96442.1| Fe-S cluster domain protein [Mahella australiensis 50-1 BON]
          Length = 434

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 11/70 (15%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
              +        +E+C  C  C   CP +AI + +G             +I   +CI CG
Sbjct: 1   MDNNYFHSVTLNKEKCRGCTNCIKRCPTEAIRVRAGKA-----------NITAERCIDCG 49

Query: 108 LCQEACPVDA 117
            C   CP  A
Sbjct: 50  ECIRVCPYHA 59


>gi|332296990|ref|YP_004438912.1| hydrogenase, Fe-only [Treponema brennaborense DSM 12168]
 gi|332180093|gb|AEE15781.1| hydrogenase, Fe-only [Treponema brennaborense DSM 12168]
          Length = 580

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 59  GEERCIACKLCEAIC--PAQAITIESGPRCHDGTRRTVR-YDIDMIKCIYCGLCQEACPV 115
             ++CI C  C   C     A  +E   R        V    +    CI CG C   CPV
Sbjct: 142 DRDKCINCGRCVEACQIMQNAWALEYSGRGDKTVIGPVAGAKLADSPCIKCGQCAAHCPV 201

Query: 116 DAIVEGP 122
            AI    
Sbjct: 202 GAITTHN 208


>gi|325290294|ref|YP_004266475.1| hydrogenase, Fe-only [Syntrophobotulus glycolicus DSM 8271]
 gi|324965695|gb|ADY56474.1| hydrogenase, Fe-only [Syntrophobotulus glycolicus DSM 8271]
          Length = 521

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 35/109 (32%), Gaps = 24/109 (22%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +++CI C  C  +C                         +   C+ CG C   CP  AI
Sbjct: 81  DDQKCILCGQCIEVCQ----------NVQTVYGYYKLPIKNETICVNCGQCTHWCPTAAI 130

Query: 119 VEGPNFEFATETRQELYYDKERL----------LNNGDRWESEIVRNIV 157
            E  +    T+   E   D +++          +  GD +   I  N+ 
Sbjct: 131 TEVDD----TQKVWEALADPDKIVIAQTAPAIRVAIGDDYGFPIGTNVE 175


>gi|323141275|ref|ZP_08076171.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT 12067]
 gi|322414232|gb|EFY05055.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT 12067]
          Length = 272

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 11/63 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            + +CI C LCE  CP ++  +  G              I+   CI CG+CQ ACPV AI
Sbjct: 217 DKNQCIGCGLCEKKCPMESAELAEGKA-----------QINQHNCICCGVCQHACPVQAI 265

Query: 119 VEG 121
             G
Sbjct: 266 SYG 268



 Score = 35.1 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 1/48 (2%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
             C  +CP  A                +R  +D  +CI CGLC++ CP
Sbjct: 186 GFCNFLCPVGAAQGLMH-AIGCKLPFVLRMRVDKNQCIGCGLCEKKCP 232


>gi|311279509|ref|YP_003941740.1| electron transport complex, RnfABCDGE type, B subunit [Enterobacter
           cloacae SCF1]
 gi|308748704|gb|ADO48456.1| electron transport complex, RnfABCDGE type, B subunit [Enterobacter
           cloacae SCF1]
          Length = 191

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 23/76 (30%), Gaps = 10/76 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   +             + +    C  C LC   CP   I
Sbjct: 112 DEPNCIGCTKCIQACPVDAIVGAT----------RAMHTVVSDLCTGCNLCVAPCPTQCI 161

Query: 119 VEGPNFEFATETRQEL 134
              P        + +L
Sbjct: 162 TLLPVKTTTETWKWDL 177



 Score = 35.1 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C  C +ACPVDAI
Sbjct: 111 IDEPNCIGCTKCIQACPVDAI 131


>gi|291521599|emb|CBK79892.1| hydrogenases, Fe-only [Coprococcus catus GD/7]
          Length = 581

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 24/72 (33%), Gaps = 3/72 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT---VRYDIDMIKCIYCGLCQE 111
                  +CI C+ C A+C         GP               D+    C+ CG C  
Sbjct: 141 HMVRDNSKCILCRRCSAVCEKVQGIGVIGPNERGFKSYIGTAFNMDLADTSCVSCGQCIA 200

Query: 112 ACPVDAIVEGPN 123
            CP  A+ E  N
Sbjct: 201 VCPTGALHEKDN 212


>gi|163749655|ref|ZP_02156902.1| putative pyruvate oxidoreductase [Shewanella benthica KT99]
 gi|161330765|gb|EDQ01702.1| putative pyruvate oxidoreductase [Shewanella benthica KT99]
          Length = 1201

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/160 (18%), Positives = 49/160 (30%), Gaps = 42/160 (26%)

Query: 14  KEFVGAFFLCLRYFFKA---------KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64
            +FV    +  +                   YP     T+   + + AL+     E  CI
Sbjct: 638 PDFVK--QVTAKMMAGKGDLIPVSMLPVDGTYP---SGTTQWEKRDIALQIPVWEETACI 692

Query: 65  ACKLCEAICPAQAITIESGPR-----CHDGTRRTVRY-----------DIDMIKCIYCGL 108
            C  C  +CP  AI  +   +       DG +                 +    C  C L
Sbjct: 693 QCGNCSIVCPHAAIRAKFYDKSLLDTAPDGFKSHTITARGFPDTRYTLQVYAQDCTGCTL 752

Query: 109 CQEACPV------------DAIVEGPNFEFATETRQELYY 136
           C +ACP+             AI   P   +  + +++L +
Sbjct: 753 CVDACPMVIQEATDTSPEIKAINMQPKGPYMEQAKKDLDF 792


>gi|154249549|ref|YP_001410374.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Fervidobacterium nodosum Rt17-B1]
 gi|154153485|gb|ABS60717.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Fervidobacterium nodosum Rt17-B1]
          Length = 116

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/105 (28%), Positives = 34/105 (32%), Gaps = 20/105 (19%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E G+      G   + R     E CI C  C   CP QAI +E              Y  
Sbjct: 18  EPGNAKQYKTGTWRVMRPIYQAENCIHCMQCWLYCPDQAIVVEIVDGKPKMRGYNYYY-- 75

Query: 99  DMIKCIYCGLCQEACP--------------VDAIVEGPNFEFATE 129
               C  CGLC   CP                AIV  P  +FA E
Sbjct: 76  ----CKGCGLCANVCPKSIDPKTKQPAPEEKRAIVMKPETDFADE 116


>gi|303243653|ref|ZP_07329994.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
 gi|302485895|gb|EFL48818.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
          Length = 256

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 28/83 (33%), Gaps = 11/83 (13%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +              +      + CI C  C   CP  AI                 
Sbjct: 174 CPKKVIKVQNELGEIPFNKDITVDNDTCIKCLSCVDECPVNAIKEIKEGV---------- 223

Query: 96  YDIDMIKCIYCGLCQEACPVDAI 118
            +I+   CI+CG C++ CPV AI
Sbjct: 224 -EINKSSCIFCGRCEKVCPVHAI 245



 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 15/75 (20%)

Query: 60  EERCIACKLCEAICPAQAITIESGP---------------RCHDGTRRTVRYDIDMIKCI 104
            E+C+ C++C   CP  AI +  G                     T R V+YDID+  CI
Sbjct: 76  PEKCVKCEICAKTCPVNAIEVLEGKVYLENEGVIYKLKETEIQHRTVRLVKYDIDLENCI 135

Query: 105 YCGLCQEACPVDAIV 119
            CG+CQ  CP +AI 
Sbjct: 136 KCGVCQRYCPTNAIH 150



 Score = 41.6 bits (96), Expect = 0.032,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           R      +RCI C LC   CP  AIT  S  +           +I   KC+ C +C + C
Sbjct: 39  RYIYVFPKRCIRCGLCYEECPVDAITKPSIRKPA---------EIIPEKCVKCEICAKTC 89

Query: 114 PVDAI 118
           PV+AI
Sbjct: 90  PVNAI 94



 Score = 37.8 bits (86), Expect = 0.46,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           +    + C+ CK CE +CP + I +++        +     +     CI C  C + CPV
Sbjct: 157 FDVNLDLCVGCKACENVCPKKVIKVQNELGEIPFNKDITVDN---DTCIKCLSCVDECPV 213

Query: 116 DAIVEGPN 123
           +AI E   
Sbjct: 214 NAIKEIKE 221


>gi|325679919|ref|ZP_08159488.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Ruminococcus albus 8]
 gi|324108357|gb|EGC02604.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Ruminococcus albus 8]
          Length = 606

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 11/67 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              +CI CK C        + I+ G              I+   C  CGLC + CPV+AI
Sbjct: 551 DSVKCINCKKCINSLGCPGLVIKDGKAA-----------IEASLCTGCGLCSQVCPVNAI 599

Query: 119 VEGPNFE 125
             G N E
Sbjct: 600 GGGENAE 606


>gi|255654361|ref|ZP_05399770.1| putative iron-sulfur-binding protein [Clostridium difficile
           QCD-23m63]
 gi|296452648|ref|ZP_06894341.1| iron-sulfur cluster-binding protein [Clostridium difficile NAP08]
 gi|296880940|ref|ZP_06904887.1| iron-sulfur cluster-binding protein [Clostridium difficile NAP07]
 gi|296258529|gb|EFH05431.1| iron-sulfur cluster-binding protein [Clostridium difficile NAP08]
 gi|296428053|gb|EFH13953.1| iron-sulfur cluster-binding protein [Clostridium difficile NAP07]
          Length = 357

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 11/63 (17%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ++CI C  C   CP +AI+I                 ID   C  CG C   CP  A+  
Sbjct: 195 KKCIGCGKCVNSCPTKAISIVDKKAV-----------IDSDVCYGCGECPTVCPTRAVTI 243

Query: 121 GPN 123
              
Sbjct: 244 QWE 246


>gi|254509395|ref|ZP_05121478.1| eleCtron transport complex, rnfabcdge type, c subunit [Vibrio
           parahaemolyticus 16]
 gi|219547669|gb|EED24711.1| eleCtron transport complex, rnfabcdge type, c subunit [Vibrio
           parahaemolyticus 16]
          Length = 840

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 9/56 (16%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI----KCIYCGLCQEACP 114
           CI C  C  +CPA  +     P+      +   +D         CI CG C   CP
Sbjct: 378 CIRCGQCAEVCPASLL-----PQQLQWHAKAEEFDKCEELNLKDCIECGACAFVCP 428



 Score = 38.9 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 18/43 (41%)

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           +  A     ++       TR+ +  D   + CI CG C E CP
Sbjct: 347 LPHANVPITKTANCILAPTRKEISPDHYEMACIRCGQCAEVCP 389


>gi|75907303|ref|YP_321599.1| ferredoxin (flavodoxin) oxidoreductase [Anabaena variabilis ATCC
           29413]
 gi|75701028|gb|ABA20704.1| ferredoxin (flavodoxin) oxidoreductase [Anabaena variabilis ATCC
           29413]
          Length = 1190

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/123 (16%), Positives = 34/123 (27%), Gaps = 30/123 (24%)

Query: 58  NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRYDID--MI 101
              + C+ C  C  +CP                A          D      ++ I     
Sbjct: 694 WDTDVCVQCSKCVMVCPHAAIRAKVYQPGELENAPPTFKSVDAKDRDFANQKFTIQVAPE 753

Query: 102 KCIYCGLCQEACPV--------DAIVEGPNFEFATETRQ--ELYYDKERLLNNGDRWESE 151
            C  C +C   CP          AI          + R   + + +    L N DR + +
Sbjct: 754 DCTGCAICVNVCPAKNKSEPSLKAINMANQLPLREQERDNWDFFLN----LPNPDRRKLK 809

Query: 152 IVR 154
           + +
Sbjct: 810 LNQ 812


>gi|33594448|ref|NP_882092.1| ferredoxin [Bordetella pertussis Tohama I]
 gi|33597856|ref|NP_885499.1| ferredoxin [Bordetella parapertussis 12822]
 gi|33564523|emb|CAE43838.1| putative ferredoxin [Bordetella pertussis Tohama I]
 gi|33574285|emb|CAE38618.1| putative ferredoxin [Bordetella parapertussis]
 gi|332383859|gb|AEE68706.1| ferredoxin [Bordetella pertussis CS]
          Length = 213

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 24/70 (34%), Gaps = 10/70 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L      E  CI C LC   CP  AI   +             + +    C  C LC   
Sbjct: 77  LLVAVIDEAHCIGCTLCMKACPVDAIVGANK----------RMHTVLADWCTGCDLCVAP 126

Query: 113 CPVDAIVEGP 122
           CPVD I   P
Sbjct: 127 CPVDCIDMRP 136


>gi|298675969|ref|YP_003727719.1| cobyrinic acid ac-diamide synthase [Methanohalobium evestigatum
           Z-7303]
 gi|298288957|gb|ADI74923.1| Cobyrinic acid ac-diamide synthase [Methanohalobium evestigatum
           Z-7303]
          Length = 285

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 15/82 (18%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100
                 F    +   Y N    C  C LC++ C   AIT +              ++++ 
Sbjct: 47  PEIMETFEFIGSKVAYVNN-NLCTECGLCKSYCRFDAITED--------------FNVNT 91

Query: 101 IKCIYCGLCQEACPVDAIVEGP 122
             C  CG+C+  CP DAI    
Sbjct: 92  FICEGCGVCEYICPEDAISLND 113


>gi|312141555|ref|YP_004008891.1| ferredoxin domain oxidoreductase [Rhodococcus equi 103S]
 gi|325677227|ref|ZP_08156893.1| ferredoxin-NADP(+) reductase [Rhodococcus equi ATCC 33707]
 gi|311890894|emb|CBH50213.1| ferredoxin domain oxidoreductase [Rhodococcus equi 103S]
 gi|325551924|gb|EGD21620.1| ferredoxin-NADP(+) reductase [Rhodococcus equi ATCC 33707]
          Length = 546

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 19/54 (35%), Gaps = 3/54 (5%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
             +CP   I              T    ID   CI CG C + CPVDAI     
Sbjct: 1   MDVCPVNCIHPTPDEPE---FATTEMLYIDPQTCIDCGACVDECPVDAIFGENE 51


>gi|294495098|ref|YP_003541591.1| CoB--CoM heterodisulfide reductase subunit A [Methanohalophilus
           mahii DSM 5219]
 gi|292666097|gb|ADE35946.1| CoB--CoM heterodisulfide reductase subunit A [Methanohalophilus
           mahii DSM 5219]
          Length = 765

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 33/88 (37%), Gaps = 19/88 (21%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + C  C  C   CP  AI+IE   +            ID + C  CG C   C  DAI
Sbjct: 583 DPDVCTLCGKCVT-CPFGAISIEDKVK------------IDPLVCNGCGYCTSLCDEDAI 629

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGD 146
                      +R+EL  + E L   GD
Sbjct: 630 HIR------GYSREELVAEIEGLAQAGD 651



 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 12/75 (16%)

Query: 61  ERCIACKLCEAICPA------QAITIESGPR-CHDGTRRTVRYDIDMIKCI-----YCGL 108
           ++C+ C  C A+CP          + +               Y I+   CI      CG 
Sbjct: 244 DKCVCCGKCAAVCPVVTENEFNCGSKDKKAVSIKFAQAVPQIYSINPEHCIELKGGRCGK 303

Query: 109 CQEACPVDAIVEGPN 123
           C+E C VDAI     
Sbjct: 304 CREVCNVDAIDFSQQ 318


>gi|262089237|gb|ACY24459.1| ferredoxin [uncultured crenarchaeote 29d5]
          Length = 207

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 2/62 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + C+A   C   CP         P      ++   + I    CI+C  C+  CP   +
Sbjct: 143 DFDICVADGACIEACPVNVYEWLDTPGHPASEKKP--FMIREKDCIFCMACENVCPPQCV 200

Query: 119 VE 120
             
Sbjct: 201 KI 202


>gi|251779811|ref|ZP_04822731.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243084126|gb|EES50016.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 1166

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 33/105 (31%), Gaps = 20/105 (19%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE---------------- 81
           FE G+ +   RG        +  E+CI C  C  +CP  AI                   
Sbjct: 665 FEAGTAAFEKRGIAVNVPEWD-SEKCIQCNQCSLVCPHAAIRPILLNEAEKNAAPANATI 723

Query: 82  -SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD--AIVEGPN 123
                     +      +  + C  CG C + CP    A+V  P 
Sbjct: 724 VDAKALKSEEKLFYTMAVAPLDCSGCGNCAQICPAPGKALVMKPQ 768


>gi|288869815|ref|ZP_05976441.2| polyferredoxin [Methanobrevibacter smithii DSM 2374]
 gi|288860364|gb|EFC92662.1| polyferredoxin [Methanobrevibacter smithii DSM 2374]
          Length = 343

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 11/122 (9%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E     P F    + R++   +  CI CK C   CP  AI +E   +            +
Sbjct: 104 ENHLLKPEFNIIPSKRQFIIDDYLCIRCKKCMKQCPVGAIHVEDDGKVV----------V 153

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158
           +  KCI CG C + CPV+       F    + ++EL       L      + E +R +  
Sbjct: 154 NPFKCISCGECLDVCPVNG-AMKGVFVDNIQDQKELIAQVVTFLEKYINNKEEDLRALKK 212

Query: 159 DS 160
           D 
Sbjct: 213 DR 214



 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/77 (25%), Positives = 25/77 (32%), Gaps = 5/77 (6%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E      RFR           +E CI C  C + CP+            +         I
Sbjct: 24  EIVEKPSRFRNFP-----NVIKEYCIGCGACISSCPSPNAIKLVRDEDDETKEGVTYPII 78

Query: 99  DMIKCIYCGLCQEACPV 115
           +   CI CG C E CP 
Sbjct: 79  NKSACIRCGFCAEVCPT 95



 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR-----YDIDMIKCIYCGLCQEAC 113
            +  CI C  C  +CP +  T+E G          +      + ID   CI C  C + C
Sbjct: 79  NKSACIRCGFCAEVCPTEPKTLECGENHLLKPEFNIIPSKRQFIIDDYLCIRCKKCMKQC 138

Query: 114 PVDAIVEGPN 123
           PV AI    +
Sbjct: 139 PVGAIHVEDD 148



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 9/66 (13%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +R      E C  C++C   CP +AI+ +          +      +  KC+ C +C ++
Sbjct: 252 IRIIDWDSETCKKCQMCIPDCPTKAISFDE---------KNDTIVRNENKCLRCSICYQS 302

Query: 113 CPVDAI 118
           CP   I
Sbjct: 303 CPFSTI 308


>gi|217077952|ref|YP_002335670.1| electron transport complex protein RnfC [Thermosipho africanus
           TCF52B]
 gi|217037807|gb|ACJ76329.1| electron transport complex protein RnfC [Thermosipho africanus
           TCF52B]
          Length = 438

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 22/74 (29%), Gaps = 1/74 (1%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100
                   G  ++  +      CI C  C  +CP                R      I +
Sbjct: 342 TPIVKGNNGITSIVPHEQKSTFCIRCSYCVNVCPMGLQPYLLDL-LGKKKRYDEAASIGL 400

Query: 101 IKCIYCGLCQEACP 114
           + CI CG C   CP
Sbjct: 401 MDCIECGSCTYICP 414


>gi|217076634|ref|YP_002334350.1| pyruvate synthase subunit PorD [Thermosipho africanus TCF52B]
 gi|217036487|gb|ACJ75009.1| pyruvate synthase subunit PorD [Thermosipho africanus TCF52B]
          Length = 110

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 31/87 (35%), Gaps = 15/87 (17%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G   + R  +  E CI C +C   CP QAI IE              Y      C  CGL
Sbjct: 28  GTWRVIRPVHQPENCIHCMMCWLYCPDQAIVIEVVDGKPKMKGYNYYY------CKGCGL 81

Query: 109 CQEACP---------VDAIVEGPNFEF 126
           C   CP           AIV  P  EF
Sbjct: 82  CANVCPKTNDNLPEEKRAIVMKPETEF 108


>gi|253699943|ref|YP_003021132.1| hypothetical protein GM21_1314 [Geobacter sp. M21]
 gi|251774793|gb|ACT17374.1| protein of unknown function DUF162 [Geobacter sp. M21]
          Length = 711

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/101 (26%), Positives = 33/101 (32%), Gaps = 14/101 (13%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYD------ 97
           R E A         +CI C  C  +CP           S      GT  T  +D      
Sbjct: 291 RTEMAQDPKFKQALQCIRCGSCLNVCPIFRLVGGHVFGSIYTGGIGTILTAWFDELKKSE 350

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
                CI CG C+E CP          E   E R+ L  +K
Sbjct: 351 DIQGLCIQCGNCKEVCPGKL----DIPEMIMEIRRRLVLEK 387


>gi|86747850|ref|YP_484346.1| formate dehydrogenase, alpha subunit [Rhodopseudomonas palustris
           HaA2]
 gi|86570878|gb|ABD05435.1| formate dehydrogenase, alpha subunit [Rhodopseudomonas palustris
           HaA2]
          Length = 948

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 30/97 (30%), Gaps = 6/97 (6%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVR 95
           EK                P+   +CI C  C   C     T     +G          ++
Sbjct: 146 EKHPNPGLDESNPYFTYDPS---KCIVCSRCVRACEEVQGTFALTIAGRGFDSVVSPGMQ 202

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
                 +C+ CG C +ACP   + E    E  T  R 
Sbjct: 203 ESFLGSECVSCGACVQACPTATLNEKSVIEIGTPERS 239


>gi|85860862|ref|YP_463064.1| electron transport complex protein, NADH-binding subunit
           [Syntrophus aciditrophicus SB]
 gi|85723953|gb|ABC78896.1| electron transport complex protein, NADH-binding subunit
           [Syntrophus aciditrophicus SB]
          Length = 439

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 20/76 (26%), Gaps = 4/76 (5%)

Query: 42  STSPRFRGEHALRRYPNG---EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
             +    G   L R          CI C  C   CP      E G     G         
Sbjct: 347 PVTKTCSGILFLTRDEIDEQPYGPCIRCGWCVEACPMGLSPNEIGLYVEAGRAADTAP-F 405

Query: 99  DMIKCIYCGLCQEACP 114
            +  C  CG C   CP
Sbjct: 406 GVFDCFECGSCAFVCP 421


>gi|50123378|ref|YP_052545.1| putative oxidoreductase Fe-S binding subunit [Pectobacterium
           atrosepticum SCRI1043]
 gi|49613904|emb|CAG77357.1| anaerobically expressed oxidoreductase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 674

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 20/90 (22%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG------LCQEAC 113
           +E+CI CK C   CP  A+++ + P  +              KC  C        C EAC
Sbjct: 84  QEKCIGCKSCVLACPFGAMSMVTNPMDNSAIAH---------KCDLCADRPEGQACVEAC 134

Query: 114 PVDAIVEGPNFEFATETRQELYYDKERLLN 143
           P  A+            RQE    K++L+ 
Sbjct: 135 PTQALQLISEHTLTAR-RQE----KQQLMA 159



 Score = 40.5 bits (93), Expect = 0.088,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 13/63 (20%)

Query: 63  CIACK--LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           C  C+   C ++CP QA+            ++     +   KCI C  C  ACP  A+  
Sbjct: 56  CRHCEDAPCASVCPTQAL-----------IKKDNSIQLVQEKCIGCKSCVLACPFGAMSM 104

Query: 121 GPN 123
             N
Sbjct: 105 VTN 107


>gi|116624102|ref|YP_826258.1| bidirectional hydrogenase complex protein HoxU [Candidatus
           Solibacter usitatus Ellin6076]
 gi|116227264|gb|ABJ85973.1| Hydrogen dehydrogenase [Candidatus Solibacter usitatus Ellin6076]
          Length = 241

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 8/93 (8%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--QAITIESGPRCHDG 89
           T +++P+             +  R+     RC+ C  C  +C     A T +   R  + 
Sbjct: 127 THVHFPYRYPRLPVD----ASHERFVMDHNRCVLCTRCVRVCDEIEGAHTWDVMARGVEC 182

Query: 90  TRRTVRYDID--MIKCIYCGLCQEACPVDAIVE 120
              T           C  CG C + CP  A+ E
Sbjct: 183 RVITDLAQPWGESESCTGCGKCVQVCPTGALSE 215


>gi|293375948|ref|ZP_06622208.1| 4Fe-4S binding domain protein [Turicibacter sanguinis PC909]
 gi|292645385|gb|EFF63435.1| 4Fe-4S binding domain protein [Turicibacter sanguinis PC909]
          Length = 428

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 2/64 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E C+ C  C   CP  AI+          +     Y ++   C+ CG+C  AC   +I
Sbjct: 294 NHETCVKCGRCLRDCPIDAIS--KVKVDEGKSTERFEYQVNEEVCLGCGVCVRACFNKSI 351

Query: 119 VEGP 122
           +   
Sbjct: 352 MLKN 355


>gi|225175188|ref|ZP_03729184.1| electron transport complex, RnfABCDGE type, B subunit [Dethiobacter
           alkaliphilus AHT 1]
 gi|225169364|gb|EEG78162.1| electron transport complex, RnfABCDGE type, B subunit [Dethiobacter
           alkaliphilus AHT 1]
          Length = 261

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 5/70 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCIYCGLCQEAC 113
             + CI+C  C+  CP Q I + +    H    +         ++    CI C +C + C
Sbjct: 167 DVDACISCGKCKNTCPRQVIELVNAKTVHHVRCKSQDKGKKVKEVCERGCIACNICVKKC 226

Query: 114 PVDAIVEGPN 123
           PVDAI    N
Sbjct: 227 PVDAIRMENN 236



 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 11/60 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CIAC +C   CP  AI +E+               ID   C  CG C E CP + I
Sbjct: 212 CERGCIACNICVKKCPVDAIRMENNIA-----------TIDSYICNNCGTCVEVCPRNTI 260



 Score = 33.9 bits (76), Expect = 7.7,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C+    CE +CP  AIT+                 ID+  CI CG C+  CP   I
Sbjct: 137 CSYGCLGLGNCERVCPVDAITMSDKGLP----------IIDVDACISCGKCKNTCPRQVI 186

Query: 119 VEGP 122
               
Sbjct: 187 ELVN 190


>gi|225026581|ref|ZP_03715773.1| hypothetical protein EUBHAL_00831 [Eubacterium hallii DSM 3353]
 gi|224956073|gb|EEG37282.1| hypothetical protein EUBHAL_00831 [Eubacterium hallii DSM 3353]
          Length = 566

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 27/82 (32%), Gaps = 3/82 (3%)

Query: 55  RYPNGEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQE 111
                + +CI C  C   C   Q + I          +    +D  +    C+ CG C+ 
Sbjct: 137 CIVIDKNKCILCGDCVRTCEEIQGLGILDFAYRGSKMQVMPAFDRKMAETACVGCGQCRV 196

Query: 112 ACPVDAIVEGPNFEFATETRQE 133
            CP  AI    N     E   +
Sbjct: 197 VCPTGAITIKHNIHPVWEALAD 218


>gi|253700341|ref|YP_003021530.1| aldo/keto reductase [Geobacter sp. M21]
 gi|251775191|gb|ACT17772.1| aldo/keto reductase [Geobacter sp. M21]
          Length = 316

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 28/81 (34%), Gaps = 11/81 (13%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
            ++   +   R E   R+    E  C  C  C   C   A+ +  G              
Sbjct: 244 EDRADEALWGRLEGRRRKLAIMEAFCKGCGACVPACTNDALKLVEGKAV----------- 292

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           +D  +CI CG C  ACP   I
Sbjct: 293 VDESQCILCGYCGAACPEFMI 313


>gi|152992174|ref|YP_001357895.1| 2-oxoglutarate-acceptor oxidoreductase subunit OorD [Sulfurovum sp.
           NBC37-1]
 gi|151424035|dbj|BAF71538.1| 2-oxoglutarate ferredoxin oxidoreductase, delta subunit [Sulfurovum
           sp. NBC37-1]
          Length = 110

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 10/88 (11%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               +RC AC +C   CPA  ++++  P+   G   +V   I    CI C  C+  CP  
Sbjct: 13  WVNTDRCKACDICVDSCPAGVLSMKQEPKSVLGAMISV---IAPESCIGCNECELVCPDF 69

Query: 117 AIV--EGPNFEFATET-----RQELYYD 137
           AI   E   F+FA  T     RQE   +
Sbjct: 70  AIYVAEKKEFKFAKLTDASKARQEAIIN 97


>gi|149244354|ref|XP_001526720.1| ATP-binding cassette sub-family E member 1 [Lodderomyces
           elongisporus NRRL YB-4239]
 gi|146449114|gb|EDK43370.1| ATP-binding cassette sub-family E member 1 [Lodderomyces
           elongisporus NRRL YB-4239]
          Length = 620

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 25/56 (44%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           K C+  C      +++G  C + T  +    I    CI CG+C + CP DAI    
Sbjct: 32  KKCKQECRKSCPVVKTGKLCIEVTPASKIAFISETLCIGCGICVKKCPFDAITIIN 87


>gi|158521172|ref|YP_001529042.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfococcus oleovorans Hxd3]
 gi|158509998|gb|ABW66965.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus
           oleovorans Hxd3]
          Length = 1002

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 10/66 (15%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
               +  + C++C  C  +CP  +  I+                 + +KC+ CG+C   C
Sbjct: 930 IISKHNRDICMSCLACFRVCPFDSPFIDEEGHISH----------NEVKCMGCGICAGVC 979

Query: 114 PVDAIV 119
           P  A  
Sbjct: 980 PAKAFQ 985



 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 29/96 (30%), Gaps = 15/96 (15%)

Query: 49  GEHALRRYPNGEERCIAC---------KLC---EAICPAQAITIESGPRCHDGTRRTVRY 96
           G   +         C  C               E    A+   I+  P     T + +  
Sbjct: 45  GTMVMLDKTFPTGDCSMCMISPKMVEIGRHPNIEIHTLAEVTAIDGEPGRFTATVKLLPR 104

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
            +D  KC  CG+C++ CP         FE     R+
Sbjct: 105 YVDPDKCTGCGICEKKCPKLV---TSEFEQGLTKRK 137


>gi|111222670|ref|YP_713464.1| pyruvate-flavodoxin oxidoreductase [Frankia alni ACN14a]
 gi|111150202|emb|CAJ61897.1| Pyruvate-flavodoxin oxidoreductase [Frankia alni ACN14a]
          Length = 1175

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 16/73 (21%)

Query: 58  NGEERCIACKLCEAICPAQAITIES----------------GPRCHDGTRRTVRYDIDMI 101
              + CI C  C  +CP  AI + +                 P+  D     V   +   
Sbjct: 681 WDADLCINCGKCTIVCPHAAIRMTAFDPALLADAPATFKSRQPKDKDLAGLRVTIQVAPD 740

Query: 102 KCIYCGLCQEACP 114
            C  C LC + CP
Sbjct: 741 DCTGCSLCVKVCP 753



 Score = 38.5 bits (88), Expect = 0.29,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 9/21 (42%)

Query: 101 IKCIYCGLCQEACPVDAIVEG 121
             CI CG C   CP  AI   
Sbjct: 684 DLCINCGKCTIVCPHAAIRMT 704


>gi|147677704|ref|YP_001211919.1| pyruvate:ferredoxin oxidoreductase [Pelotomaculum thermopropionicum
           SI]
 gi|146273801|dbj|BAF59550.1| pyruvate:ferredoxin oxidoreductase [Pelotomaculum thermopropionicum
           SI]
          Length = 1172

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 28/109 (25%)

Query: 58  NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRYDID--MI 101
             +++CI C  C  +C                +A                + Y I    +
Sbjct: 685 WDKDKCIQCNQCSMVCSHAAIRPFLLNEEELKKAPATFETKPAVGKQLAGLAYRIQVSPL 744

Query: 102 KCIYCGLCQEACP--VDAIVEGP---------NFEFATE-TRQELYYDK 138
            C+ CG+C + CP    A+   P         N+++A   T ++  ++K
Sbjct: 745 DCMGCGVCADICPSKEKALSMQPFDSQVKEAENWDYAMTVTVKDNLWNK 793


>gi|289139|gb|AAC36818.1| nitrogen fixation protein [Nostoc sp. PCC 7120]
          Length = 1197

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 30/116 (25%), Gaps = 30/116 (25%)

Query: 58  NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRYDID--MI 101
              + C+ C  C  +CP                A          D      ++ I     
Sbjct: 703 WDTDICVQCSKCVMVCPHAAIRAKVYQPSELENAPPTFKSVDAKDRDFANQKFTIQVAPE 762

Query: 102 KCIYCGLCQEACPV--------DAIVEGPNFEFATETRQ--ELYYDKERLLNNGDR 147
            C  C +C   CP          AI          + R   + + +    L N DR
Sbjct: 763 DCTGCAICVNVCPAKNKSEPSLKAINMANQLPLREQERDNWDFFLN----LPNPDR 814


>gi|50121881|ref|YP_051048.1| pyruvate-flavodoxin oxidoreductase [Pectobacterium atrosepticum
           SCRI1043]
 gi|49612407|emb|CAG75857.1| pyruvate-flavodoxin oxidoreductase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 1170

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 24/89 (26%), Gaps = 16/89 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY 96
            A++      E C  C  C  ICP                A  +                
Sbjct: 679 IAIQVPAWQPEGCTQCNQCAFICPHAAIRPALLSQEDRSNAPVVLLSKVAQGAKAYEYHL 738

Query: 97  DIDMIKCIYCGLCQEACPVD--AIVEGPN 123
            +  + C  CG C + CP    A+   P 
Sbjct: 739 AVSPLDCSGCGNCVDICPSRGKALTMQPI 767


>gi|17230295|ref|NP_486843.1| pyruvate-flavodoxin dehydrogenase; nitrogen fixation protein
           [Nostoc sp. PCC 7120]
 gi|20141586|sp|Q06879|NIFJ_ANASP RecName: Full=Pyruvate-flavodoxin oxidoreductase
 gi|17131896|dbj|BAB74502.1| pyruvate-flavodoxin dehydrogenase; nitrogen fixation protein
           [Nostoc sp. PCC 7120]
          Length = 1199

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/116 (17%), Positives = 30/116 (25%), Gaps = 30/116 (25%)

Query: 58  NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRYDID--MI 101
              + C+ C  C  +CP                A          D      ++ I     
Sbjct: 703 WDTDICVQCSKCVMVCPHAAIRAKVYQPSELENAPPTFKSVDAKDRDFANQKFTIQVAPE 762

Query: 102 KCIYCGLCQEACPV--------DAIVEGPNFEFATETRQ--ELYYDKERLLNNGDR 147
            C  C +C   CP          AI          + R   + + +    L N DR
Sbjct: 763 DCTGCAICVNVCPAKNKSEPSLKAINMANQLPLREQERDNWDFFLN----LPNPDR 814


>gi|114565952|ref|YP_753106.1| heterodisulfide reductase subunit A, selenocysteine-containing
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
 gi|114336887|gb|ABI67735.1| heterodisulfide reductase, subunit A, selenocysteine-containing
           [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 461

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 1/63 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIES-GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
              +C  C  C  ICP  AI++E    R H G        ++   C  CG C  AC   A
Sbjct: 382 DISKCSGCGFCVPICPYNAISLEPIQERGHHGPFTRNVAQVNSSLCQGCGACLPACRTLA 441

Query: 118 IVE 120
           +  
Sbjct: 442 LNL 444



 Score = 42.4 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 13/94 (13%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE--------SGPRCHDGTRRTVRYD 97
            F+     +      + C  C  C   CP + +  E        +            ++ 
Sbjct: 27  NFKATIKKKPKYVDWDLCTGCGTCAEKCPTKKLKDEFDLGLGLRTAIHKVYPQAVPGKFY 86

Query: 98  IDMIKCIY-----CGLCQEACPVDAIVEGPNFEF 126
           ID   C       CG+C++ CP  AI      E+
Sbjct: 87  IDAQNCTKLTSGKCGVCEKLCPAKAIRFDDKEEY 120



 Score = 37.0 bits (84), Expect = 0.78,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 16/33 (48%)

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
            +   +D+ KC  CG C   CP +AI   P  E
Sbjct: 376 PMVTQVDISKCSGCGFCVPICPYNAISLEPIQE 408


>gi|116751281|ref|YP_847968.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Syntrophobacter fumaroxidans MPOB]
 gi|116700345|gb|ABK19533.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Syntrophobacter fumaroxidans MPOB]
          Length = 358

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 12/67 (17%)

Query: 55  RYPNGEERCIACKLCEA-ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                 ++C  C +C    C  +AI  E              Y I   +CI CGLC   C
Sbjct: 269 CAEIDPDKCSHCGICADERCQVEAIRDEGD-----------FYRIVGDRCIGCGLCATTC 317

Query: 114 PVDAIVE 120
           P +AI  
Sbjct: 318 PEEAIAL 324


>gi|325279072|ref|YP_004251614.1| putative ferredoxin, putative iron-sulfur protein [Odoribacter
           splanchnicus DSM 20712]
 gi|324310881|gb|ADY31434.1| putative ferredoxin, putative iron-sulfur protein [Odoribacter
           splanchnicus DSM 20712]
          Length = 260

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 12/79 (15%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
            KG+   + +G    +      E C  C  C  ICP QAI +E       G         
Sbjct: 169 VKGNFPYKVKGPKTPQTPETVAELCTQCGFCIGICPVQAIRLEEEIVSDAG--------- 219

Query: 99  DMIKCIYCGLCQEACPVDA 117
              +CI C  C + CP +A
Sbjct: 220 ---RCIKCCACVKQCPNEA 235



 Score = 37.4 bits (85), Expect = 0.72,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 13/40 (32%)

Query: 84  PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           P    G +     +     C  CG C   CPV AI     
Sbjct: 174 PYKVKGPKTPQTPETVAELCTQCGFCIGICPVQAIRLEEE 213


>gi|322832828|ref|YP_004212855.1| electron transport complex, RnfABCDGE type, C subunit [Rahnella sp.
           Y9602]
 gi|321168029|gb|ADW73728.1| electron transport complex, RnfABCDGE type, C subunit [Rahnella sp.
           Y9602]
          Length = 705

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           P  EE CI C LC   CPA  +  +       G         ++  CI CG C   CP
Sbjct: 380 PEPEEACIRCSLCAESCPAGLLPQQLY-WFSKGEEHEKARKHNLFDCIECGACAYVCP 436


>gi|257468446|ref|ZP_05632540.1| [Fe] hydrogenase [Fusobacterium ulcerans ATCC 49185]
 gi|317062710|ref|ZP_07927195.1| hydrogenase [Fusobacterium ulcerans ATCC 49185]
 gi|313688386|gb|EFS25221.1| hydrogenase [Fusobacterium ulcerans ATCC 49185]
          Length = 680

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 13/80 (16%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E+CI C +C  IC                   +++   D   CI CG C   CP  +I E
Sbjct: 25  EKCIKCGMCRDICRD---------YIGVHGTYSLKDTNDTAVCINCGQCANVCPASSITE 75

Query: 121 GPNFEFATETRQELYYDKER 140
              +    +   E   +K++
Sbjct: 76  KYEY----QQIAEAVKNKDK 91


>gi|294936201|ref|XP_002781654.1| pyruvate:ferredoxin oxidoreductase/NADPH-cytochrome P450, putative
           [Perkinsus marinus ATCC 50983]
 gi|239892576|gb|EER13449.1| pyruvate:ferredoxin oxidoreductase/NADPH-cytochrome P450, putative
           [Perkinsus marinus ATCC 50983]
          Length = 1855

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 27/79 (34%), Gaps = 15/79 (18%)

Query: 59  GEERCIACKLCEAICPA-------------QAITIESGPRCHDGTRRTVRYDID--MIKC 103
             ++C  C LC  ICP               A+  E+ P       +   Y I    + C
Sbjct: 722 DMDKCTQCNLCSVICPHAAIRPFLLDTVENDAVPTETRPAKGGSEVQGFHYRIQVTPLDC 781

Query: 104 IYCGLCQEACPVDAIVEGP 122
             C  C  ACP DA+    
Sbjct: 782 TGCEACSWACPDDALTMVN 800


>gi|238924008|ref|YP_002937524.1| ferredoxin [Eubacterium rectale ATCC 33656]
 gi|238875683|gb|ACR75390.1| ferredoxin [Eubacterium rectale ATCC 33656]
 gi|291524748|emb|CBK90335.1| electron transport complex, RnfABCDGE type, B subunit [Eubacterium
           rectale DSM 17629]
 gi|291528931|emb|CBK94517.1| electron transport complex, RnfABCDGE type, B subunit [Eubacterium
           rectale M104/1]
          Length = 263

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 28/83 (33%), Gaps = 11/83 (13%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P++          +            CI C LCE  CP+ A+ +               
Sbjct: 191 IPYDTKHVVKCSSKDKGKDVMKACSVGCIGCHLCEKNCPSDAVHVVDN-----------V 239

Query: 96  YDIDMIKCIYCGLCQEACPVDAI 118
             ID  KC  CG+C E CP   I
Sbjct: 240 AYIDQEKCTGCGICAEKCPKKII 262



 Score = 35.5 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 5/72 (6%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGP-----RCHDGTRRTVRYDIDMIKCIYCGLCQE 111
                 C AC  C   CP   I +         +C    +         + CI C LC++
Sbjct: 167 CVNPLTCKACGKCVEACPKHLIELIPYDTKHVVKCSSKDKGKDVMKACSVGCIGCHLCEK 226

Query: 112 ACPVDAIVEGPN 123
            CP DA+    N
Sbjct: 227 NCPSDAVHVVDN 238


>gi|262193883|ref|YP_003265092.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haliangium
           ochraceum DSM 14365]
 gi|262077230|gb|ACY13199.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haliangium
           ochraceum DSM 14365]
          Length = 591

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC-IYCGLCQEACPVDAIV 119
           ERCI C  C  +CP   +   +  +       T   D  +  C + C LC E CP  AI 
Sbjct: 410 ERCIKCDQCINVCPTNVLQPSTLAQGGLEGVWTPVMDFSVGFCQLNCTLCTEVCPTGAIQ 469

Query: 120 EGP 122
           + P
Sbjct: 470 KTP 472



 Score = 41.6 bits (96), Expect = 0.037,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 4/79 (5%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR-YDIDMIKCIYCGLCQEACPV 115
            + E  C+ C+    + P    T E      DGT+ T+    +    CI CG+C+  CPV
Sbjct: 503 WSMETPCVVCEEVCPVSPKAIGTYEEEIVRWDGTKVTLHKPYMRPELCIGCGICERECPV 562

Query: 116 D---AIVEGPNFEFATETR 131
               A+      E  ++ R
Sbjct: 563 VDDAAVYVTAIGETRSDDR 581


>gi|198275773|ref|ZP_03208304.1| hypothetical protein BACPLE_01948 [Bacteroides plebeius DSM 17135]
 gi|198271402|gb|EDY95672.1| hypothetical protein BACPLE_01948 [Bacteroides plebeius DSM 17135]
          Length = 321

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 8/76 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCH--------DGTRRTVRYDIDMIKCIYCGLCQ 110
            E +C AC  C   CP   I I    + +        +  +  V        CI CG C 
Sbjct: 169 DESKCTACGACSKACPRNIIEIRPKGKNNRRVYVQCVNKDKGAVARKACAAACIGCGKCV 228

Query: 111 EACPVDAIVEGPNFEF 126
           + CP +AI    N  +
Sbjct: 229 KVCPFEAITLENNLAY 244



 Score = 41.6 bits (96), Expect = 0.036,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 9/60 (15%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+ C  C + C   AI +                ++D  KC  CG C +ACP + I   P
Sbjct: 142 CLGCGDCVSACQFDAIHMNPETGLP---------EVDESKCTACGACSKACPRNIIEIRP 192



 Score = 38.9 bits (89), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 11/56 (19%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           CI C  C  +CP +AIT+E+               ID  KC  C  C+  CP  AI
Sbjct: 221 CIGCGKCVKVCPFEAITLENNLAY-----------IDPAKCKSCRKCEMECPQQAI 265



 Score = 33.9 bits (76), Expect = 7.9,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 11/21 (52%)

Query: 103 CIYCGLCQEACPVDAIVEGPN 123
           C+ CG C  AC  DAI   P 
Sbjct: 142 CLGCGDCVSACQFDAIHMNPE 162


>gi|218780400|ref|YP_002431718.1| molybdopterin oxidoreductase [Desulfatibacillum alkenivorans AK-01]
 gi|218761784|gb|ACL04250.1| NADH-quinone oxidoreductase subunit 3-like protein (Nqo3/NuoG)
           [Desulfatibacillum alkenivorans AK-01]
          Length = 878

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 19/67 (28%), Gaps = 3/67 (4%)

Query: 59  GEERCIACKLCEAICPAQ-AITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115
              +CI C  C                      R    ++  + K  C +CG C   CP 
Sbjct: 144 DLTKCILCGKCIRADHELVCAGAIDYNHRGFDARPATLFEQPLEKSECTFCGTCVSLCPT 203

Query: 116 DAIVEGP 122
            A+    
Sbjct: 204 GALTMKN 210



 Score = 35.8 bits (81), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 9/61 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L   P  +  C  C  C ++CP  A+T+++        +              CG C   
Sbjct: 181 LFEQPLEKSECTFCGTCVSLCPTGALTMKNVRYVGTPQKEHESI---------CGFCAAG 231

Query: 113 C 113
           C
Sbjct: 232 C 232


>gi|153006951|ref|YP_001381276.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing
           protein [Anaeromyxobacter sp. Fw109-5]
 gi|152030524|gb|ABS28292.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Anaeromyxobacter sp. Fw109-5]
          Length = 460

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 19/54 (35%), Gaps = 3/54 (5%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           C  C+ C   C    +          G    V   + +  C  CGLC EACP  
Sbjct: 17  CKGCRRCLEACAHGCLAPGDEIHPLSGL---VPVVLSLDACNGCGLCVEACPEP 67


>gi|145591762|ref|YP_001153764.1| putative ATPase RIL [Pyrobaculum arsenaticum DSM 13514]
 gi|145283530|gb|ABP51112.1| ABC transporter related [Pyrobaculum arsenaticum DSM 13514]
          Length = 590

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 20/58 (34%), Gaps = 6/58 (10%)

Query: 66  CKL-CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C   C   CP          +      +T +  I    CI CG+C   CP +AI    
Sbjct: 17  CGHECVKYCPVN-----KTGKVVWIDEQTKKAVISEALCIGCGICVHKCPFEAITIVN 69


>gi|57234998|ref|YP_180962.1| iron-sulfur cluster-binding protein/coenzyme F420-reducing
           hydrogenase, beta subunit, putative [Dehalococcoides
           ethenogenes 195]
 gi|57225446|gb|AAW40503.1| iron-sulfur cluster-binding protein/coenzyme F420-reducing
           hydrogenase, beta subunit, putative [Dehalococcoides
           ethenogenes 195]
          Length = 428

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 5/66 (7%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           ++ C  C +C+A+CPA AI ++  P+      +     ++   C  CG C +ACP   I 
Sbjct: 16  QKLCCGCGICQAVCPAGAIKMQIDPQKGIYLPK-----LNEALCQNCGKCLKACPGTGIN 70

Query: 120 EGPNFE 125
                E
Sbjct: 71  LDEYTE 76


>gi|70672290|gb|AAZ06362.1| ATP-binding cassette sub-family E member 1 [Toxoplasma gondii]
 gi|111145377|gb|ABH06908.1| ATP-binding cassette sub-family E member 1 [Toxoplasma gondii]
 gi|111145379|gb|ABH06909.1| ATP-binding cassette sub-family E member 1 [Toxoplasma gondii]
 gi|111145381|gb|ABH06910.1| ATP-binding cassette sub-family E member 1 [Toxoplasma gondii]
          Length = 631

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 1/67 (1%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            LR      +RC   K C   C      + +G  C +    +    I    CI CG+C +
Sbjct: 16  RLRIAIVNADRCKP-KKCRQECKRNCPVVRTGKLCIEADATSKIAFISEPLCIGCGICVK 74

Query: 112 ACPVDAI 118
            CP +AI
Sbjct: 75  KCPFEAI 81


>gi|78358277|ref|YP_389726.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78220682|gb|ABB40031.1| Pyruvate:ferredoxin (flavodoxin) oxidoreductase [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 1217

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 31/93 (33%), Gaps = 22/93 (23%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITI------------------ESGPRCHDGTRR 92
            A+       E CI C  C  +CP  AI                    ++  +   G + 
Sbjct: 677 VAINVPEWLPENCIQCNQCSYVCPHAAIRPVLATEEELEGAPESFVTVDAKGKELKGLKY 736

Query: 93  TVRYDIDMIKCIYCGLCQEACPV--DAIVEGPN 123
             R  +    C+ CG C + CP    A+V  P 
Sbjct: 737 --RMQVYSQDCLGCGSCADVCPAKNKALVMKPI 767


>gi|117923999|ref|YP_864616.1| electron transport complex, RnfABCDGE type subunit beta
           [Magnetococcus sp. MC-1]
 gi|226735422|sp|A0L5G7|RNFB_MAGSM RecName: Full=Electron transport complex protein rnfB
 gi|117607755|gb|ABK43210.1| electron transport complex, RnfABCDGE type, B subunit
           [Magnetococcus sp. MC-1]
          Length = 181

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 31/83 (37%), Gaps = 10/83 (12%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
            SP    +   +     EE CI C  C  +CP  AI   +             + + + +
Sbjct: 90  VSPAAMDDEGPKVAYIDEEACIGCTACIKVCPVDAIVGANKQ----------SHTVIVAE 139

Query: 103 CIYCGLCQEACPVDAIVEGPNFE 125
           C  C LC E CP D I   P  E
Sbjct: 140 CTSCQLCLEPCPTDCITMQPVPE 162


>gi|302340161|ref|YP_003805367.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
           [Spirochaeta smaragdinae DSM 11293]
 gi|301637346|gb|ADK82773.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
           [Spirochaeta smaragdinae DSM 11293]
          Length = 583

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 3/68 (4%)

Query: 59  GEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYD-IDMIKCIYCGLCQEACPV 115
             E+C+ C  C  +C        +E   R  +        D ++   CI CG C   CPV
Sbjct: 144 NPEKCVNCGRCANVCQVMQGVWALEFIGRGENVRIAPSADDTLNDSPCIKCGQCSAHCPV 203

Query: 116 DAIVEGPN 123
            AI E   
Sbjct: 204 GAIFEKDE 211


>gi|255731141|ref|XP_002550495.1| ATP-binding cassette sub-family E member 1 [Candida tropicalis
           MYA-3404]
 gi|240132452|gb|EER32010.1| ATP-binding cassette sub-family E member 1 [Candida tropicalis
           MYA-3404]
          Length = 622

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 25/56 (44%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           K C+  C      +++G  C + T  +    I    CI CG+C + CP DAI    
Sbjct: 34  KKCKQECRKSCPVVKTGKLCIEVTPASKIAFISETLCIGCGICVKKCPFDAITIIN 89


>gi|212635176|ref|YP_002311701.1| electron transport complex protein RnfB [Shewanella piezotolerans
           WP3]
 gi|226735433|sp|B8CM57|RNFB_SHEPW RecName: Full=Electron transport complex protein rnfB
 gi|212556660|gb|ACJ29114.1| Electron transport complex, RnfABCDGE type, B subunit [Shewanella
           piezotolerans WP3]
          Length = 189

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 10/63 (15%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C   CP  AI               + + +    C  C LC   CPVD I  
Sbjct: 112 DECIGCTKCIQACPVDAILGSGK----------LMHTVITDYCTGCDLCVAPCPVDCIDM 161

Query: 121 GPN 123
            P 
Sbjct: 162 LPI 164



 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           I   +CI C  C +ACPVDAI
Sbjct: 109 IREDECIGCTKCIQACPVDAI 129


>gi|189460038|ref|ZP_03008823.1| hypothetical protein BACCOP_00674 [Bacteroides coprocola DSM 17136]
 gi|189433199|gb|EDV02184.1| hypothetical protein BACCOP_00674 [Bacteroides coprocola DSM 17136]
          Length = 321

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 8/76 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------DMIKCIYCGLCQ 110
            E +C AC  C   CP   I I    + +                       CI CG C 
Sbjct: 169 DESKCTACGACSKACPRNIIEIRPKGKNNRRVYVQCVNKDKGAVARKACTAACIGCGKCV 228

Query: 111 EACPVDAIVEGPNFEF 126
           + CP +AI    N  +
Sbjct: 229 KVCPFEAITLENNLAY 244



 Score = 40.9 bits (94), Expect = 0.056,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 9/60 (15%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+ C  C + C   AI +                ++D  KC  CG C +ACP + I   P
Sbjct: 142 CLGCGDCVSACQFDAIHMNPETGLP---------EVDESKCTACGACSKACPRNIIEIRP 192



 Score = 38.9 bits (89), Expect = 0.24,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 11/60 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI C  C  +CP +AIT+E+               ID  KC  C  C+  CP +AI
Sbjct: 217 CTAACIGCGKCVKVCPFEAITLENNLAY-----------IDPAKCKSCRKCETECPQNAI 265


>gi|188996665|ref|YP_001930916.1| ferredoxin [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931732|gb|ACD66362.1| ferredoxin [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 628

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 6/89 (6%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRRT 93
            PFEK      +  ++          RC+ C  C ++C    ++ +I    R  +     
Sbjct: 128 TPFEKIRPEEDWESDY----LEYVSNRCVLCMKCVSVCDNINKSHSITQIERGFEILISP 183

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
               +D   C  CGLC + CPV AI+  P
Sbjct: 184 ALKPMDTSTCEMCGLCVDICPVGAILFKP 212


>gi|154505922|ref|ZP_02042660.1| hypothetical protein RUMGNA_03464 [Ruminococcus gnavus ATCC 29149]
 gi|153793940|gb|EDN76360.1| hypothetical protein RUMGNA_03464 [Ruminococcus gnavus ATCC 29149]
          Length = 1201

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 23/99 (23%), Gaps = 19/99 (19%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG           + CI C  C  +CP                A                
Sbjct: 699 RGIAVDIPIWQ-PDNCIQCNRCAYVCPHAVIRPIALTEEEAANAPEGMDMIDMMGMPNMK 757

Query: 94  VRYDIDMIKCIYCGLCQEACP----VDAIVEGPNFEFAT 128
               +    C  CG C   CP      A+V G     A 
Sbjct: 758 FSIAVSAYDCTGCGSCANVCPGKKGEKALVMGNMEANAG 796


>gi|158520594|ref|YP_001528464.1| cobyrinic acid ac-diamide synthase [Desulfococcus oleovorans Hxd3]
 gi|158509420|gb|ABW66387.1| Cobyrinic acid ac-diamide synthase [Desulfococcus oleovorans Hxd3]
          Length = 291

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +RC +C  C  +C  +AI  +              + +D I C  CG+C + CP  AI
Sbjct: 64  DPDRCTSCGRCLELCRFEAIRDD--------------FVVDPIACEGCGVCVDLCPEQAI 109

Query: 119 VE 120
             
Sbjct: 110 DF 111


>gi|118444372|ref|YP_877570.1| MinD family protein [Clostridium novyi NT]
 gi|118134828|gb|ABK61872.1| MinD superfamily P-loop ATPase containing an inserted ferredoxin
           domain [Clostridium novyi NT]
          Length = 285

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 36/121 (29%), Gaps = 28/121 (23%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R     +     E  C  C  CE +C   AI+                  I    C  CG
Sbjct: 52  RDFFGGKIAEINENLCSGCGKCEKVCRFDAISNNK---------------ISNYSCEGCG 96

Query: 108 LCQEACPVDAIVEGPNFEFATETRQELYYDKER-------LLNNGDRWESEIVRNIVTDS 160
            C   CP +AI          E   ++Y  K          ++ G     +++  +  D+
Sbjct: 97  TCILVCPNNAITLK------EEKSADIYITKTDKGIISRAKMDIGSEGSGKLIAELREDA 150

Query: 161 P 161
            
Sbjct: 151 K 151


>gi|150019130|ref|YP_001311384.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing
           protein [Clostridium beijerinckii NCIMB 8052]
 gi|149905595|gb|ABR36428.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Clostridium beijerinckii NCIMB 8052]
          Length = 1169

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 33/105 (31%), Gaps = 20/105 (19%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-----------------QAITI 80
           FE G+ +   RG        + +++CI C  C  +CP                   A   
Sbjct: 665 FENGTAAFEKRGIAVNVPEWD-KDKCIQCNQCSMVCPHASIRPFLLTEAEKNAAPSANKA 723

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD--AIVEGPN 123
            +               +  + C  CG C + CP    A+V  P 
Sbjct: 724 VAAKGLKTEEPLFYTMGVTPLDCSGCGNCAQVCPAPGKALVMKPQ 768


>gi|256372135|ref|YP_003109959.1| protein of unknown function DUF224 cysteine-rich region domain
           protein [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008719|gb|ACU54286.1| protein of unknown function DUF224 cysteine-rich region domain
           protein [Acidimicrobium ferrooxidans DSM 10331]
          Length = 419

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 12/64 (18%)

Query: 63  CIACKLCEAICPAQAITIES------------GPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
           C+ C  C + CP  A+T                     G     R  + + +CI C  C 
Sbjct: 19  CVHCGFCLSACPTYAVTRAEADSPRGRIWLLAEEATRSGPVVADRVRLHIDRCIGCEACV 78

Query: 111 EACP 114
            ACP
Sbjct: 79  PACP 82



 Score = 34.3 bits (77), Expect = 5.1,   Method: Composition-based stats.
 Identities = 8/16 (50%), Positives = 11/16 (68%)

Query: 103 CIYCGLCQEACPVDAI 118
           C++CG C  ACP  A+
Sbjct: 19  CVHCGFCLSACPTYAV 34


>gi|188585715|ref|YP_001917260.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350402|gb|ACB84672.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 1177

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 33/109 (30%), Gaps = 19/109 (17%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRC 86
            +T+   RG           ++CI C  C  ICP               +A       + 
Sbjct: 669 RTTAYEKRGIAVNIPEWQ-IDKCIQCNQCSYICPHAVIRPYLLDEEEVQRAPETFETKQA 727

Query: 87  HDGTRRTVRYDID--MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
                  + Y I    + C  CG C + CP          E A E  ++
Sbjct: 728 TGKDMDDLSYRIQVSPLDCTGCGNCADICPAKGKAL--IMEPAEEQIEQ 774


>gi|148642428|ref|YP_001272941.1| glutamate synthase (NADPH), subunit 2 [Methanobrevibacter smithii
           ATCC 35061]
 gi|222446074|ref|ZP_03608589.1| hypothetical protein METSMIALI_01723 [Methanobrevibacter smithii
           DSM 2375]
 gi|148551445|gb|ABQ86573.1| glutamate synthase (NADPH), subunit 2 [Methanobrevibacter smithii
           ATCC 35061]
 gi|222435639|gb|EEE42804.1| hypothetical protein METSMIALI_01723 [Methanobrevibacter smithii
           DSM 2375]
          Length = 498

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 10/64 (15%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                E+ C  C  C   CP     I  G            Y ++  KC+ C +C E CP
Sbjct: 26  CDDRDEKICGRCFSCYNNCPHGVYEIIQGEP----------YPLNQEKCVGCRICLEMCP 75

Query: 115 VDAI 118
             AI
Sbjct: 76  NRAI 79


>gi|82734593|gb|ABB89703.1| trichloroethene reductive dehalogenase [Dehalococcoides sp.
           FMC-TCE]
          Length = 554

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 3/60 (5%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID---MIKCIYCGLCQEACPVD 116
            E C  C +C   CP QAI+ E              Y+       KCI C  C+  CP  
Sbjct: 434 REFCKTCGICAEHCPTQAISHEGPRFDSPYWDNVSGYEGWHLDHHKCINCTNCESFCPFF 493



 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 103 CIYCGLCQEACPVDAI-VEGPNFE 125
           C  CG+C E CP  AI  EGP F+
Sbjct: 437 CKTCGICAEHCPTQAISHEGPRFD 460


>gi|147918955|ref|YP_687319.1| tungsten formylmethanofuran dehydrogenase, subunit G [uncultured
           methanogenic archaeon RC-I]
 gi|110622715|emb|CAJ37993.1| tungsten formylmethanofuran dehydrogenase, subunit G [uncultured
           methanogenic archaeon RC-I]
          Length = 77

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 20/66 (30%), Gaps = 4/66 (6%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRT----VRYDIDMIKCIYCGLCQEACPV 115
              C  C  C   CP  A+ +                     ID   C  CG+C E CP 
Sbjct: 10  NRTCTGCNNCVVACPVNALELTVANPVTKKKTYNVLNGKAVVIDDEVCNGCGICLEVCPQ 69

Query: 116 DAIVEG 121
            AI   
Sbjct: 70  RAITLT 75



 Score = 33.5 bits (75), Expect = 9.1,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 12/25 (48%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEG 121
           DI    C  C  C  ACPV+A+   
Sbjct: 7   DIQNRTCTGCNNCVVACPVNALELT 31


>gi|88603095|ref|YP_503273.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methanospirillum hungatei
           JF-1]
 gi|88188557|gb|ABD41554.1| formylmethanofuran dehydrogenase, subunit G [Methanospirillum
           hungatei JF-1]
          Length = 146

 Score = 45.1 bits (105), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 25/71 (35%), Gaps = 6/71 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY------DIDMIKCIYCGLCQ 110
               ERC  C  C   CP  A+ + +           V        D+    C  CG+C 
Sbjct: 67  HVNMERCTGCNNCVVACPVNALELNTVNPSSTDKIYKVINGDAVILDVKHELCAGCGICV 126

Query: 111 EACPVDAIVEG 121
           +ACP D I   
Sbjct: 127 DACPYDVIQLS 137


>gi|238919983|ref|YP_002933498.1| hypothetical protein NT01EI_2087 [Edwardsiella ictaluri 93-146]
 gi|259646560|sp|C5BDE6|RNFB_EDWI9 RecName: Full=Electron transport complex protein rnfB
 gi|238869552|gb|ACR69263.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 191

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   +             + +   +C  CGLC   CP   I
Sbjct: 112 DEANCIGCTKCIQSCPVDAIVGAT----------RALHTVISDQCTGCGLCLPPCPTSCI 161

Query: 119 VEGP 122
              P
Sbjct: 162 QLVP 165



 Score = 35.5 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C  C ++CPVDAI
Sbjct: 111 IDEANCIGCTKCIQSCPVDAI 131


>gi|257388652|ref|YP_003178425.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Halomicrobium
           mukohataei DSM 12286]
 gi|257170959|gb|ACV48718.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Halomicrobium
           mukohataei DSM 12286]
          Length = 109

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 24/69 (34%), Gaps = 2/69 (2%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                  + CIA   C   CP         P   +   +         +CI C LC + C
Sbjct: 37  THVAVDFDICIADGACLEDCPVDVFEWVDTPDHPESEIKADPA--HEDQCIDCMLCVDVC 94

Query: 114 PVDAIVEGP 122
           PVDAI   P
Sbjct: 95  PVDAIDVDP 103


>gi|224540171|ref|ZP_03680710.1| hypothetical protein BACCELL_05084 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518205|gb|EEF87310.1| hypothetical protein BACCELL_05084 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 600

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 6/56 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            +  C  C  C  +C   AIT  +              ++D  KC  CGLC+  CP
Sbjct: 6   DKAMCCGCNACGDVCAHDAITFRTDIEGFWYP------EVDKDKCTDCGLCERVCP 55


>gi|239817035|ref|YP_002945945.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Variovorax
           paradoxus S110]
 gi|239803612|gb|ACS20679.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Variovorax
           paradoxus S110]
          Length = 713

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 9/58 (15%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           + C  C  +C A AI+ +   +         R  ++   C+ CG C   CP  A+   
Sbjct: 320 VGCNACVEVCSAHAISSDKERQ---------RIVVNPQLCVGCGACTTVCPTGALGYT 368



 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 9/82 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++ C  C  C + CPA A+             +          C+ CGLC   CP +AI
Sbjct: 580 NKDSCTLCLACVSACPASALQDNQNAPQLRFIEKN---------CVQCGLCATTCPENAI 630

Query: 119 VEGPNFEFATETRQELYYDKER 140
              P    A E +Q +  ++ +
Sbjct: 631 ALVPRLLAAPERKQPVLLNEAK 652



 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 12/30 (40%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           ID+  C  C  C   CP  AI      + A
Sbjct: 192 IDLDLCTRCNACLGVCPEQAIGLDYQIDLA 221


>gi|114776888|ref|ZP_01451931.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Mariprofundus ferrooxydans PV-1]
 gi|114552974|gb|EAU55405.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Mariprofundus ferrooxydans PV-1]
          Length = 548

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 25/88 (28%), Gaps = 3/88 (3%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P ++          ++ +       RC++C  C                      +  R
Sbjct: 456 SPEQRLGGFEEILQGYSEKEALFEARRCLSCGNCFEC---DGCYGSCPEDAIIKLGKGKR 512

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           Y  D  KC  C  C E CP  AI     
Sbjct: 513 YLYDYDKCTGCASCFEQCPCHAIEMVSE 540


>gi|92113125|ref|YP_573053.1| formate dehydrogenase, alpha subunit [Chromohalobacter salexigens
           DSM 3043]
 gi|91796215|gb|ABE58354.1| NAD-dependent formate dehydrogenase iron-sulfur protein /
           NAD-dependent formate dehydrogenase catalytic subunit
           [Chromohalobacter salexigens DSM 3043]
          Length = 953

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 59  GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115
             + CI C LC   C   Q   +         ++    +D  M    C+ CG C +ACP 
Sbjct: 173 NLDACIECNLCVRACREVQGNDVIGMAHRGAASKIVFDFDDPMGDSTCVACGECVQACPT 232

Query: 116 DAIV 119
            A++
Sbjct: 233 GALM 236


>gi|298206864|ref|YP_003715043.1| conserved ferredoxin-related protein [Croceibacter atlanticus
           HTCC2559]
 gi|83849498|gb|EAP87366.1| conserved ferredoxin-related protein [Croceibacter atlanticus
           HTCC2559]
          Length = 633

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 9/62 (14%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           +CI+C  C   C           +           +I    C+ CG+C   CP   +   
Sbjct: 554 QCISCGNCSTYCEMGIDVRAYAQKGE---------NIVRSSCVGCGICSAVCPRGVLKLE 604

Query: 122 PN 123
            +
Sbjct: 605 ND 606


>gi|332295341|ref|YP_004437264.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Thermodesulfobium narugense DSM 14796]
 gi|332178444|gb|AEE14133.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Thermodesulfobium narugense DSM 14796]
          Length = 119

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 8/82 (9%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G   ++     +E+C  C  C   CP  +I +E          +      D + C  CG+
Sbjct: 39  GTWRVQHPTVNKEKCTNCMTCWLFCPDMSIVVEKKNN------KYEMLGFDPVHCKGCGV 92

Query: 109 CQEACPVDAIVE--GPNFEFAT 128
           C + CPV+AI    G +FE   
Sbjct: 93  CSKVCPVNAIEMVLGSDFENTE 114


>gi|294637338|ref|ZP_06715634.1| pyridine nucleotide-disulfide oxidoreductase family protein
           [Edwardsiella tarda ATCC 23685]
 gi|291089495|gb|EFE22056.1| pyridine nucleotide-disulfide oxidoreductase family protein
           [Edwardsiella tarda ATCC 23685]
          Length = 545

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 24/94 (25%), Gaps = 6/94 (6%)

Query: 35  NYPFEKGSTSPRF---RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
             P         F    G  +  +      RC +C  C                      
Sbjct: 453 RQPEVSPEQRAGFDEIIGGLSGEQATYEAARCYSCGNCFEC---DGCYGACPEGAVIKLG 509

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           + +RY  D  KC  C  C   CP  AI      E
Sbjct: 510 KGLRYRFDYDKCTGCRACYLQCPCHAIEMISEEE 543


>gi|325980919|ref|YP_004293321.1| electron transport complex, RnfABCDGE type, B subunit [Nitrosomonas
           sp. AL212]
 gi|325530438|gb|ADZ25159.1| electron transport complex, RnfABCDGE type, B subunit [Nitrosomonas
           sp. AL212]
          Length = 227

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 10/66 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C  C   CP  AI   +             + +   +C  C LC   CP+D
Sbjct: 80  WIDENLCIGCTFCIQSCPVDAIVGAAKQ----------MHTVITDECTGCDLCVTPCPMD 129

Query: 117 AIVEGP 122
            I   P
Sbjct: 130 CISMIP 135



 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 15/34 (44%)

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                    V   ID   CI C  C ++CPVDAI
Sbjct: 68  MHGYPRSYQVVAWIDENLCIGCTFCIQSCPVDAI 101


>gi|261349386|ref|ZP_05974803.1| glutamate synthase family protein [Methanobrevibacter smithii DSM
           2374]
 gi|288861750|gb|EFC94048.1| glutamate synthase family protein [Methanobrevibacter smithii DSM
           2374]
          Length = 498

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 10/64 (15%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                E+ C  C  C   CP     I  G            Y ++  KC+ C +C E CP
Sbjct: 26  CDDRDEKICGRCFSCYNNCPHGVYEIIQGEP----------YPLNQEKCVGCRICLEMCP 75

Query: 115 VDAI 118
             AI
Sbjct: 76  NRAI 79


>gi|255656659|ref|ZP_05402068.1| pyruvate-flavodoxin oxidoreductase [Clostridium difficile
           QCD-23m63]
 gi|296449885|ref|ZP_06891649.1| pyruvate:ferredoxin oxidoreductase [Clostridium difficile NAP08]
 gi|296878266|ref|ZP_06902275.1| pyruvate:ferredoxin oxidoreductase [Clostridium difficile NAP07]
 gi|296261155|gb|EFH07986.1| pyruvate:ferredoxin oxidoreductase [Clostridium difficile NAP08]
 gi|296430714|gb|EFH16552.1| pyruvate:ferredoxin oxidoreductase [Clostridium difficile NAP07]
          Length = 1179

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 28/94 (29%), Gaps = 19/94 (20%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG           + CI C  C  ICP                A       +        
Sbjct: 675 RGIAVDVPEWI-IDNCIQCNQCSFICPHACIRPVLVTEEELANAPEGFEAKKALGKGLEG 733

Query: 94  VRYDID--MIKCIYCGLCQEACP--VDAIVEGPN 123
           ++Y I    + C  CG C + CP    A+V  P 
Sbjct: 734 LKYRIQVSPLDCTGCGNCADICPAKEKALVMKPI 767


>gi|206895470|ref|YP_002247506.1| pyruvate synthase subunit PorD (Pyruvate oxidoreductasedelta chain)
           (POR) (Pyruvic-ferredoxin oxidoreductase subunit delta)
           [Coprothermobacter proteolyticus DSM 5265]
 gi|206738087|gb|ACI17165.1| pyruvate synthase subunit PorD (Pyruvate oxidoreductasedelta chain)
           (POR) (Pyruvic-ferredoxin oxidoreductase subunit delta)
           [Coprothermobacter proteolyticus DSM 5265]
          Length = 94

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 10/65 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E+C  C  C  +CP  A+ ++ G               D + C  CG+C E CPV  I
Sbjct: 38  NLEKCTHCMTCWVMCPDNAVNVKGGKMLGF----------DYLACKGCGVCAEVCPVKVI 87

Query: 119 VEGPN 123
                
Sbjct: 88  EMVKE 92


>gi|18977101|ref|NP_578458.1| mulitcopper oxidase domain-containing protein [Pyrococcus furiosus
           DSM 3638]
 gi|18892744|gb|AAL80853.1| multi domain protein containing corrinoid/iron-sulfur region
           [Pyrococcus furiosus DSM 3638]
          Length = 388

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 8/70 (11%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             L R     ERC  C +C  +CP     ++         R          KC+ CG C 
Sbjct: 294 ERLLRVALDGERCTGCGVCVDVCPRACYEVDGENHTVMMPR--------ADKCVQCGACI 345

Query: 111 EACPVDAIVE 120
             CP +A+  
Sbjct: 346 VQCPFEALRF 355



 Score = 35.5 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 7/33 (21%), Positives = 11/33 (33%)

Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
            +C  CG+C + CP                R +
Sbjct: 304 ERCTGCGVCVDVCPRACYEVDGENHTVMMPRAD 336


>gi|114566560|ref|YP_753714.1| NADH dehydrogenase I subunit G [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114337495|gb|ABI68343.1| NADH dehydrogenase I chain G [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 358

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 20/65 (30%), Gaps = 3/65 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---YDIDMIKCIYCGLCQEACPV 115
              +CI C  C   C                 R+       D     C++CG C   CP 
Sbjct: 150 DLNKCILCGACVRACEEMTGQDNLSYLNRGFHRKATTAGDVDYIDSDCVFCGQCVAVCPT 209

Query: 116 DAIVE 120
            A+ E
Sbjct: 210 GALQE 214


>gi|310778492|ref|YP_003966825.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Ilyobacter polytropus DSM 2926]
 gi|309747815|gb|ADO82477.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Ilyobacter polytropus DSM 2926]
          Length = 598

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 10/58 (17%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           ++CI C  C  +CP +AI            R   ++ I   +CI CG C  AC  +AI
Sbjct: 548 DKCIGCTACAKVCPTEAILG----------RVKEKHYIYQDRCIKCGACYNACRFNAI 595


>gi|300310808|ref|YP_003774900.1| NAD-dependent formate dehydrogenase subunit alpha [Herbaspirillum
           seropedicae SmR1]
 gi|300073593|gb|ADJ62992.1| NAD-dependent formate dehydrogenase, alpha subunit, protein
           [Herbaspirillum seropedicae SmR1]
          Length = 957

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 22/69 (31%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     +G                  +C+ CG C E
Sbjct: 163 YFTYDPSKCIVCNRCVRACEETQGTFALTINGRGFESRVSAGQMEAFMESECVSCGACVE 222

Query: 112 ACPVDAIVE 120
           ACP   + E
Sbjct: 223 ACPTATLTE 231


>gi|257064473|ref|YP_003144145.1| polyferredoxin, heterodixulfide reductase subunit A [Slackia
           heliotrinireducens DSM 20476]
 gi|256792126|gb|ACV22796.1| polyferredoxin, heterodixulfide reductase subunit A [Slackia
           heliotrinireducens DSM 20476]
          Length = 660

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 33/123 (26%), Gaps = 15/123 (12%)

Query: 29  KAKTTINYPFEKGSTSPR---FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
               T+    E  + S     F      +        C  C  CE  CP +  +      
Sbjct: 206 HPNITVKTLAEVENVSGYIGNFEVTIREKAKYIDYNLCTGCGACETKCPVRVDSDFEQGM 265

Query: 86  CHDGTRRTVRYD-------IDMIKCIY-----CGLCQEACPVDAIVEGPNFEFATETRQE 133
                   +          ID   C       CG+C   CP  AI      +  TET   
Sbjct: 266 KKRTAIYKMFPQAVPAKPVIDAAHCRKLTEGKCGVCARVCPTGAIRYDDEDKVTTETYGA 325

Query: 134 LYY 136
           + +
Sbjct: 326 IIF 328


>gi|223041744|ref|ZP_03611937.1| electron transport complex protein RnfB [Actinobacillus minor 202]
 gi|223017428|gb|EEF15846.1| electron transport complex protein RnfB [Actinobacillus minor 202]
          Length = 203

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 21/64 (32%), Gaps = 10/64 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E+ CI C  C   CP  AI   +             + +    C  C LC   CP +
Sbjct: 110 FIHEDMCIGCTKCIQACPVDAIIGTNK----------AMHTVIADLCTGCELCVAPCPTN 159

Query: 117 AIVE 120
            I  
Sbjct: 160 CIEM 163



 Score = 38.2 bits (87), Expect = 0.45,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 14/25 (56%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           I    CI C  C +ACPVDAI+   
Sbjct: 111 IHEDMCIGCTKCIQACPVDAIIGTN 135


>gi|159905022|ref|YP_001548684.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Methanococcus maripaludis C6]
 gi|159886515|gb|ABX01452.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Methanococcus maripaludis C6]
          Length = 612

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 32/91 (35%), Gaps = 17/91 (18%)

Query: 38  FEKGSTSPRFRGEHA-----LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
              G ++  FRG         +RY     +C  CK+C       AIT+            
Sbjct: 533 EYNGPSAVVFRGNCVSLIKSNKRYVIDRNKCTGCKICVERLGCPAITLNGKIPE------ 586

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                  M  C  CGLC+  CP DAI E   
Sbjct: 587 ------IMENCTGCGLCKAICPADAINEVDE 611


>gi|153870634|ref|ZP_01999994.1| heterodisulfide reductase, subunit A/methylviologen reducing
           hydrogenase, subunit delta [Beggiatoa sp. PS]
 gi|152072901|gb|EDN70007.1| heterodisulfide reductase, subunit A/methylviologen reducing
           hydrogenase, subunit delta [Beggiatoa sp. PS]
          Length = 725

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 28/83 (33%), Gaps = 13/83 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L      +E C  CK C   CP  AI  +                 +  +C  CG C  A
Sbjct: 510 LSFPSFRKEGCTQCKRCTVECPFGAINEDEKRYPLF----------NEARCRRCGTCMGA 559

Query: 113 CPVDAIVEGPNFEFATETRQELY 135
           CPV  I       ++ ET  +  
Sbjct: 560 CPVRVISFEN---YSVETVGQAI 579


>gi|329954944|ref|ZP_08295961.1| 4Fe-4S binding domain protein [Bacteroides clarus YIT 12056]
 gi|328527048|gb|EGF54059.1| 4Fe-4S binding domain protein [Bacteroides clarus YIT 12056]
          Length = 373

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 10/55 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
             E CI C +C   C   AI + +G +            ID  KC+ CG C   C
Sbjct: 192 DIENCIGCNICVKHCAHDAIHLNAGRKAE----------IDYAKCVGCGQCVALC 236


>gi|319789712|ref|YP_004151345.1| NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding
           protein [Thermovibrio ammonificans HB-1]
 gi|317114214|gb|ADU96704.1| NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding
           protein [Thermovibrio ammonificans HB-1]
          Length = 728

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 2/62 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPVD 116
             +RCI C+ C  +C         G            +  D     C +CG C + CPV 
Sbjct: 144 DNDRCILCRRCIRMCGENMGNRVLGILKRGYKAYISPFNGDFIESGCEHCGSCVDVCPVG 203

Query: 117 AI 118
           ++
Sbjct: 204 SL 205


>gi|311280101|ref|YP_003942332.1| glutamate synthase, small subunit [Enterobacter cloacae SCF1]
 gi|308749296|gb|ADO49048.1| glutamate synthase, small subunit [Enterobacter cloacae SCF1]
          Length = 646

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 29/87 (33%), Gaps = 15/87 (17%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACK--LCEAICPAQAITIESGPRCHDGTRRT 93
           +P  +   +P  R    L R  +    C  C    C A CP  A+  +            
Sbjct: 31  WPQNRRDFTP--RIHVVLGRDASNAATCRHCNDAPCVASCPTHALRFDDN---------- 78

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVE 120
               ++   CI C  C  ACP  AI  
Sbjct: 79  -SVQLNQTLCIGCKNCAIACPFGAIEM 104



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 19/71 (26%), Gaps = 6/71 (8%)

Query: 59  GEERCIACKLCEAIC----PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL--CQEA 112
               CI C  CE  C       A                 R   +   C +C    C  +
Sbjct: 8   DAMECIGCHACEVACVSAHHQDAWPQNRRDFTPRIHVVLGRDASNAATCRHCNDAPCVAS 67

Query: 113 CPVDAIVEGPN 123
           CP  A+    N
Sbjct: 68  CPTHALRFDDN 78



 Score = 38.9 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 27/112 (24%), Positives = 39/112 (34%), Gaps = 7/112 (6%)

Query: 51  HALRRYPN----GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
           HALR   N     +  CI CK C   CP  AI + +G    D      + D+        
Sbjct: 71  HALRFDDNSVQLNQTLCIGCKNCAIACPFGAIEMVAG--SEDAPALAQKCDLCREHVTGK 128

Query: 107 GLCQEACPVDAIVEGPNFEFATETRQELYYDKE-RLLNNGDRWESEIVRNIV 157
             C   CP  A+    +       R+      + +LL  G R   E + +  
Sbjct: 129 PACVANCPTRALRLMDDDGLRQLQRERQIRAAQGQLLQAGPRSRRETLLDKA 180


>gi|317050947|ref|YP_004112063.1| ferredoxin-dependent glutamate synthase [Desulfurispirillum indicum
           S5]
 gi|316946031|gb|ADU65507.1| ferredoxin-dependent glutamate synthase [Desulfurispirillum indicum
           S5]
          Length = 546

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 26/80 (32%), Gaps = 14/80 (17%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPR---------CHDGTRRTVRYDI----- 98
             R     +RC  C  C A CP +AI      R                     I     
Sbjct: 15  FWRINYKHDRCTMCGKCLASCPFRAIEAGVEKRRRVISDHLTPKPKVLFQTVPVIRQVLN 74

Query: 99  DMIKCIYCGLCQEACPVDAI 118
               C  CG+C++ CP +AI
Sbjct: 75  HHEACRGCGICEKVCPNEAI 94


>gi|238912647|ref|ZP_04656484.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 287

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 25/78 (32%), Gaps = 12/78 (15%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            + C  C  C   CP   I  +                I   +C  CG C   CP  A+ 
Sbjct: 190 PQECRMCGACWRSCPENVIQFDDN-----------TLTIAAARCTGCGGCAAVCPHQALR 238

Query: 120 EGPNFEFATETRQELYYD 137
              + E A+ TR    + 
Sbjct: 239 LRFDVEPAS-TRHSAVHT 255



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 11/50 (22%)

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  +CPAQA ++  G              ID  +CI CG C   CPVDAI
Sbjct: 29  CADVCPAQAFSLAQGQVS-----------IDTTRCIACGDCLFVCPVDAI 67


>gi|227830006|ref|YP_002831785.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus L.S.2.15]
 gi|284996921|ref|YP_003418688.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Sulfolobus
           islandicus L.D.8.5]
 gi|227456453|gb|ACP35140.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus L.S.2.15]
 gi|284444816|gb|ADB86318.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Sulfolobus
           islandicus L.D.8.5]
          Length = 455

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 17/92 (18%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
               L  Y NG  +  AC +CE  CP  AI ++          +    +ID IKC  CGL
Sbjct: 109 KPIYLSEYCNGLYK--ACNVCEFSCPYNAIKVD----------KKTGVNIDYIKCTSCGL 156

Query: 109 CQEACPVDAIVE-----GPNFEFATETRQELY 135
           C  +CPV AI          FE A    ++  
Sbjct: 157 CVASCPVSAIQFPSLSQNSIFELAKVKGEKRI 188



 Score = 41.6 bits (96), Expect = 0.035,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 7/68 (10%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
            + L        RC  C+ C   CP  A+ +                + D  +CI C +C
Sbjct: 290 PYILFDVSIDNNRCTLCESCVNWCPTSALKLRRNSGVE-------EINFDPKRCIGCNVC 342

Query: 110 QEACPVDA 117
              CP   
Sbjct: 343 VNVCPESC 350


>gi|188588130|ref|YP_001920151.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium
           botulinum E3 str. Alaska E43]
 gi|188498411|gb|ACD51547.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium
           botulinum E3 str. Alaska E43]
          Length = 1166

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 33/105 (31%), Gaps = 20/105 (19%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE---------------- 81
           FE G+ +   RG        +  E+CI C  C  +CP  AI                   
Sbjct: 665 FEAGTAAFEKRGIAVNVPEWD-AEKCIQCNQCSLVCPHAAIRPILLNEAEKNAAPANATI 723

Query: 82  -SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD--AIVEGPN 123
                     +      +  + C  CG C + CP    A+V  P 
Sbjct: 724 VDAKALKSEEKLFYTMAVAPLDCSGCGNCAQICPAPGKALVMKPQ 768


>gi|229578325|ref|YP_002836723.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus Y.G.57.14]
 gi|229582724|ref|YP_002841123.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus Y.N.15.51]
 gi|228009039|gb|ACP44801.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus Y.G.57.14]
 gi|228013440|gb|ACP49201.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus Y.N.15.51]
          Length = 455

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 17/92 (18%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
               L  Y NG  +  AC +CE  CP  AI ++          +    +ID IKC  CGL
Sbjct: 109 KPIYLSEYCNGLYK--ACNVCEFSCPYNAIKVD----------KKTGVNIDYIKCTSCGL 156

Query: 109 CQEACPVDAIVE-----GPNFEFATETRQELY 135
           C  +CPV AI          FE A    ++  
Sbjct: 157 CVASCPVSAIQFPSLSQNSIFELAKVKGEKRI 188



 Score = 41.6 bits (96), Expect = 0.035,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 7/68 (10%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
            + L        RC  C+ C   CP  A+ +                + D  +CI C +C
Sbjct: 290 PYILFDVSIDNNRCTLCESCVNWCPTSALKLRRNSGVE-------EINFDPKRCIGCNVC 342

Query: 110 QEACPVDA 117
              CP   
Sbjct: 343 VNVCPESC 350


>gi|91772648|ref|YP_565340.1| nitrite and sulphite reductase [Methanococcoides burtonii DSM 6242]
 gi|91711663|gb|ABE51590.1| coenzyme F420-dependent sulfite reductase [Methanococcoides
           burtonii DSM 6242]
          Length = 639

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 11/59 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
             E+C  C  C  +C   AI++ SG              ID   CI CG C   CP +A
Sbjct: 515 DTEKCTGCGRCSELCKLNAISVISGKAV-----------IDRDLCINCGWCVRGCPHEA 562


>gi|71900626|ref|ZP_00682752.1| Electron transport complex, RnfABCDGE type, B subunit [Xylella
           fastidiosa Ann-1]
 gi|71729620|gb|EAO31725.1| Electron transport complex, RnfABCDGE type, B subunit [Xylella
           fastidiosa Ann-1]
          Length = 139

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 24/67 (35%), Gaps = 10/67 (14%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C  C   CP  AI   +             + +    C  C LC  ACPV+
Sbjct: 83  WIIEADCIGCTKCIQACPVDAIIGGAK----------HMHTVIAALCTGCELCVPACPVE 132

Query: 117 AIVEGPN 123
            I   PN
Sbjct: 133 CIELHPN 139


>gi|322806473|emb|CBZ04042.1| mind superfamily P-loop ATPase containing an inserted ferredoxin
           domain [Clostridium botulinum H04402 065]
          Length = 281

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 23/65 (35%), Gaps = 15/65 (23%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ CI C  CE +C   AI                 + ID   C  CG C   CP +AI
Sbjct: 63  DEDICIKCTECELVCKFDAIEN---------------FKIDPFLCEGCGACTLICPQNAI 107

Query: 119 VEGPN 123
                
Sbjct: 108 KLEDE 112


>gi|254168286|ref|ZP_04875132.1| 4Fe-4S binding domain protein [Aciduliprofundum boonei T469]
 gi|197622795|gb|EDY35364.1| 4Fe-4S binding domain protein [Aciduliprofundum boonei T469]
          Length = 166

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 9/99 (9%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
           +   Y  +   T+    +K       R +           + I C  C+ ICP  AI ++
Sbjct: 1   MTEEYLERGYLTLEELKKKVELPSEERLQGKHPVAVPECPQRIPCTPCKEICPVNAIKMD 60

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           +               ++  KCI C LC + CP  A   
Sbjct: 61  NPNDPPV---------VNYDKCIGCSLCVQICPGLAFFM 90


>gi|168179907|ref|ZP_02614571.1| iron-sulfur binding protein [Clostridium botulinum NCTC 2916]
 gi|226949492|ref|YP_002804583.1| CobQ/CobB/MinD/ParA family protein [Clostridium botulinum A2 str.
           Kyoto]
 gi|182669235|gb|EDT81211.1| iron-sulfur binding protein [Clostridium botulinum NCTC 2916]
 gi|226844018|gb|ACO86684.1| CobQ/CobB/MinD/ParA family protein [Clostridium botulinum A2 str.
           Kyoto]
          Length = 281

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 23/65 (35%), Gaps = 15/65 (23%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ CI C  CE +C   AI                 + ID   C  CG C   CP +AI
Sbjct: 63  DEDICIKCTECELVCKFDAIEN---------------FKIDPFLCEGCGACTLICPQNAI 107

Query: 119 VEGPN 123
                
Sbjct: 108 KLEDE 112


>gi|158319788|ref|YP_001512295.1| nitroreductase [Alkaliphilus oremlandii OhILAs]
 gi|158139987|gb|ABW18299.1| nitroreductase [Alkaliphilus oremlandii OhILAs]
          Length = 266

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 13/86 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E+CI C LC   CP   + +++G              +   KC+ CG C   CP DA 
Sbjct: 10  DVEKCIGCGLCCKDCPLHVLVLQNGKA-----------TMMAEKCLECGHCVAICPKDAF 58

Query: 119 VEG--PNFEFATETRQELYYDKERLL 142
                   E  T  +     D++ LL
Sbjct: 59  TMRGYDMQEVKTYDKNIFGIDEDILL 84


>gi|281357847|ref|ZP_06244333.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548]
 gi|281315794|gb|EFA99821.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548]
          Length = 614

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 10/62 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               +RC+ C LC   CP   I+ E          R +R+ ID  +CI CG+C + C   
Sbjct: 560 YEISDRCVGCGLCLHRCPVNCISGE----------RKMRHRIDQSRCIKCGVCFQTCKFH 609

Query: 117 AI 118
           A+
Sbjct: 610 AV 611



 Score = 37.0 bits (84), Expect = 0.93,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                  + +RY+I   +C+ CGLC   CPV+ I
Sbjct: 549 CPAGVCAKLIRYEIS-DRCVGCGLCLHRCPVNCI 581


>gi|118602190|ref|YP_903405.1| electron transport complex, RnfABCDGE type, B subunit [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
 gi|118567129|gb|ABL01934.1| electron transport complex, RnfABCDGE type, B subunit [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
          Length = 179

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 10/61 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C LC  +CP  A    S               + + +C  C LC   CPVD I
Sbjct: 114 DEAVCIGCTLCIQVCPVDAFLGASKMMT----------QVIIDECTGCDLCIPVCPVDCI 163

Query: 119 V 119
            
Sbjct: 164 H 164


>gi|53802983|ref|YP_115217.1| electron transport complex subunit B [Methylococcus capsulatus str.
           Bath]
 gi|53756744|gb|AAU91035.1| electron transport complex, B subunit [Methylococcus capsulatus
           str. Bath]
          Length = 182

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C  +CP  A+                 + +    C  CG C + CP + +
Sbjct: 108 DESTCIGCARCYKVCPTDALVGAPKQ----------IHAVIADACTACGKCVDVCPTECL 157

Query: 119 VEGP 122
              P
Sbjct: 158 RLHP 161


>gi|78357324|ref|YP_388773.1| ferredoxin hydrogenase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219729|gb|ABB39078.1| Ferredoxin hydrogenase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 439

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 8/76 (10%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
           P+      +R      ++C+AC  CE  CP   +   +            R  +D + C+
Sbjct: 38  PKDVDPATIRFVEVDHDKCMACGECEYHCPTGVMQEVTED--------GYRGVVDPVACV 89

Query: 105 YCGLCQEACPVDAIVE 120
            CG C   CP  AI E
Sbjct: 90  NCGQCLANCPFGAIHE 105


>gi|89894363|ref|YP_517850.1| hypothetical protein DSY1617 [Desulfitobacterium hafniense Y51]
 gi|89333811|dbj|BAE83406.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 206

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 12/56 (21%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C+ C   C   A++ +                    KCI CG C  +CP D I
Sbjct: 98  CTGCQACCRSCQEGALSWQGELEFE------------PTKCIGCGDCVRSCPTDKI 141


>gi|73748035|ref|YP_307274.1| putative reductive dehalogenase [Dehalococcoides sp. CBDB1]
 gi|73659751|emb|CAI82358.1| putative reductive dehalogenase [Dehalococcoides sp. CBDB1]
          Length = 506

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 59  GEERCIACKLCEAICPAQAI---TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           G E C  C +C   CP  AI                  + + +D+ KC +C +CQ  CP 
Sbjct: 386 GYEFCKTCGICADACPMGAIQKGEPSWDASEIWQNPGYLGWRLDLTKCSHCPVCQGVCPF 445

Query: 116 D 116
           +
Sbjct: 446 N 446



 Score = 33.9 bits (76), Expect = 7.6,   Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 100 MIKCIYCGLCQEACPVDAIVEG 121
              C  CG+C +ACP+ AI +G
Sbjct: 387 YEFCKTCGICADACPMGAIQKG 408


>gi|16761442|ref|NP_457059.1| polyferredoxin [Salmonella enterica subsp. enterica serovar Typhi
           str. CT18]
 gi|29140861|ref|NP_804203.1| polyferredoxin [Salmonella enterica subsp. enterica serovar Typhi
           str. Ty2]
 gi|213026884|ref|ZP_03341331.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
 gi|213163416|ref|ZP_03349126.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213649659|ref|ZP_03379712.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213857323|ref|ZP_03384294.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|25512770|pir||AF0822 probable polyferredoxin STY2772 [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16503742|emb|CAD02730.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136486|gb|AAO68052.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
          Length = 287

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 25/78 (32%), Gaps = 12/78 (15%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            + C  C  C   CP   I  +                I   +C  CG C   CP  A+ 
Sbjct: 190 PQECRMCGACWRSCPENVIQFDDD-----------TLTIAAARCTGCGGCAAVCPHQALR 238

Query: 120 EGPNFEFATETRQELYYD 137
              + E A+ TR    + 
Sbjct: 239 LRFDVEPAS-TRHSAVHT 255



 Score = 35.1 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID  +CI CG C   CPVDAI
Sbjct: 47  IDTTRCIACGDCLFVCPVDAI 67


>gi|152979688|ref|YP_001345317.1| quinol dehydrogenase membrane component [Actinobacillus
           succinogenes 130Z]
 gi|150841411|gb|ABR75382.1| ferredoxin-type protein, NapH/MauN family [Actinobacillus
           succinogenes 130Z]
          Length = 298

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 23/73 (31%), Gaps = 5/73 (6%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           ++       RC  C  C  +CP          R            I    CI CG C + 
Sbjct: 222 IKVNVVDRARCDRCMDCYNVCP-----EPQVLRLPLHGSEHDSQIILEKDCITCGRCIDV 276

Query: 113 CPVDAIVEGPNFE 125
           CP +    G  FE
Sbjct: 277 CPENVFAFGSRFE 289


>gi|320156874|ref|YP_004189253.1| electron transport complex protein RnfC [Vibrio vulnificus
           MO6-24/O]
 gi|319932186|gb|ADV87050.1| electron transport complex protein RnfC [Vibrio vulnificus
           MO6-24/O]
          Length = 690

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 20/57 (35%), Gaps = 9/57 (15%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI----KCIYCGLCQEACP 114
            CI C  C   CPA  +     P+      +   +D         CI CG C   CP
Sbjct: 377 ECIRCGACAEACPASLL-----PQQLQWHAKAEEFDKCEELNLKDCIECGACAFVCP 428



 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 19/43 (44%)

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           +  A     ++       TR+ +      ++CI CG C EACP
Sbjct: 347 LPHANVPITKTSNCILAPTRKEISPAGYEMECIRCGACAEACP 389


>gi|315427054|dbj|BAJ48671.1| coenzyme F420-dependent hydrogenase beta subunit [Candidatus
           Caldiarchaeum subterraneum]
          Length = 399

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 23/67 (34%), Gaps = 10/67 (14%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           RG+  +     G  RC  C  C  +CP            +            +  CI C 
Sbjct: 47  RGDQVIVDGVVGTGRCSGCAACVTVCPTNVFDYVEDHPVNT----------RLNHCIECD 96

Query: 108 LCQEACP 114
           LC EACP
Sbjct: 97  LCVEACP 103



 Score = 33.9 bits (76), Expect = 6.9,   Method: Composition-based stats.
 Identities = 7/47 (14%), Positives = 12/47 (25%)

Query: 78  ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
                      G +  V   +   +C  C  C   CP +      + 
Sbjct: 37  WHHALEWVSKRGDQVIVDGVVGTGRCSGCAACVTVCPTNVFDYVEDH 83


>gi|313680540|ref|YP_004058279.1| hypothetical protein Ocepr_1653 [Oceanithermus profundus DSM 14977]
 gi|313153255|gb|ADR37106.1| protein of unknown function DUF224 cysteine-rich region domain
           protein [Oceanithermus profundus DSM 14977]
          Length = 680

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/126 (21%), Positives = 32/126 (25%), Gaps = 29/126 (23%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPN----GEERCIACKLCEA 71
            V AF L  R     K  +  P +    +    G   L  +          CI C  C  
Sbjct: 238 MVSAFKLTFR---AEKPGVLDPIDFEDETAESFGAARLEDFSWPRLIDPYACIMCNRCAD 294

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDM----------------------IKCIYCGLC 109
           +CPA        P       R    DI                          C  C  C
Sbjct: 295 VCPANVTGKALNPAALIINERYEFNDILPAFAAGEASPRPLLEFALDADALWSCTTCMAC 354

Query: 110 QEACPV 115
            E CPV
Sbjct: 355 VEVCPV 360


>gi|254785633|ref|YP_003073062.1| electron transport complex, RnfABCDGE type, B subunit
           [Teredinibacter turnerae T7901]
 gi|237684395|gb|ACR11659.1| electron transport complex, RnfABCDGE type, B subunit
           [Teredinibacter turnerae T7901]
          Length = 175

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 10/67 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            EE C+ C  C   CP  A+   +G            + +    C  C  CQEACP + I
Sbjct: 106 NEELCVGCTKCFKACPTDAVVGANGQ----------IHVVISSACTGCKKCQEACPENCI 155

Query: 119 VEGPNFE 125
              P  E
Sbjct: 156 SMSPEEE 162


>gi|182705280|sp|P60200|HDRA_METJA RecName: Full=CoB--CoM heterodisulfide reductase iron-sulfur
           subunit A
          Length = 657

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 28/80 (35%), Gaps = 7/80 (8%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAIT-------IESGPRCHDGTRRTVRYDI 98
            F      +     E  C  C  C A+CP +                        + Y I
Sbjct: 228 NFEVTIEKKPRYVDENICTGCGACAAVCPIEVPNEFDLGLGTRKAIYVPFAQAVPLVYTI 287

Query: 99  DMIKCIYCGLCQEACPVDAI 118
           DM  CI CGLC++AC   AI
Sbjct: 288 DMDHCIRCGLCEKACGPGAI 307



 Score = 41.2 bits (95), Expect = 0.047,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 7/71 (9%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
              + R    E+ C  C++C  +CP  AIT              +   ++ + C  CG C
Sbjct: 570 RIEMIRAVVDEDVCGGCQVCAKMCPYNAITYVEKD-------GHLVAQVNDVACKGCGSC 622

Query: 110 QEACPVDAIVE 120
             ACP  A+  
Sbjct: 623 AGACPSGAMQL 633


>gi|167771902|ref|ZP_02443955.1| hypothetical protein ANACOL_03275 [Anaerotruncus colihominis DSM
           17241]
 gi|167665700|gb|EDS09830.1| hypothetical protein ANACOL_03275 [Anaerotruncus colihominis DSM
           17241]
          Length = 384

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 11/62 (17%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
                 C+ C  C   CPA+ I I++               I++  CI+C  CQE CPV 
Sbjct: 319 HVRPRDCVGCGRCAESCPAKTIRIKNKKA-----------KINLSNCIHCFCCQEMCPVR 367

Query: 117 AI 118
           AI
Sbjct: 368 AI 369



 Score = 34.3 bits (77), Expect = 5.0,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 12/28 (42%)

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           R  +    C+ CG C E+CP   I    
Sbjct: 317 RPHVRPRDCVGCGRCAESCPAKTIRIKN 344


>gi|218779474|ref|YP_002430792.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
            [Desulfatibacillum alkenivorans AK-01]
 gi|218760858|gb|ACL03324.1| Putative uncharacterized protein(contains glutamate synthase domain
            and a partial HdrA domain) [Desulfatibacillum
            alkenivorans AK-01]
          Length = 1115

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 6/61 (9%)

Query: 57   PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
                +RC  C  C A+CP QAI ++                +D   C  CG C   CP +
Sbjct: 1042 CVDADRCRGCGSCVAVCPYQAIGLKQNTVGGWYAF------VDEALCKGCGNCISVCPNN 1095

Query: 117  A 117
            A
Sbjct: 1096 A 1096



 Score = 38.2 bits (87), Expect = 0.39,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 2/49 (4%)

Query: 77   AITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQEACPVDAIVEGPN 123
            A  + +      G R+   Y   +D  +C  CG C   CP  AI    N
Sbjct: 1020 ATAVLAASVMPRGPRQNKGYTSCVDADRCRGCGSCVAVCPYQAIGLKQN 1068



 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 98  IDMIKCIYCGLCQEACPV 115
           +D  +C  CG C EACPV
Sbjct: 106 VDPERCTLCGKCVEACPV 123


>gi|158340823|ref|YP_001521991.1| bidirectional hydrogenase complex protein HoxU [Acaryochloris
           marina MBIC11017]
 gi|158311064|gb|ABW32677.1| hydrogenase subunit U [Acaryochloris marina MBIC11017]
          Length = 239

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 27/93 (29%), Gaps = 12/93 (12%)

Query: 31  KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--QAITIESGPRCHD 88
           + T  +P      S    G            RC+ C  C  +C     A T +   R   
Sbjct: 124 RFTYQFPDRSVDISHPQFGV--------DHNRCVLCTRCIRVCDEIEGAHTWDMAGRGRK 175

Query: 89  GTRRTVRYDID--MIKCIYCGLCQEACPVDAIV 119
               T           C  CG C  ACP  AI 
Sbjct: 176 SRVITDLNQPWGEAESCTACGKCVNACPTGAIF 208


>gi|21242137|ref|NP_641719.1| ferredoxin [Xanthomonas axonopodis pv. citri str. 306]
 gi|21107549|gb|AAM36255.1| ferredoxin II [Xanthomonas axonopodis pv. citri str. 306]
          Length = 168

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 31/85 (36%), Gaps = 11/85 (12%)

Query: 39  EKGSTSPRFRGEHAL-RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
                  R RG H L +     E  CI C  C   CP  AI          G  + +   
Sbjct: 92  VPPRPYDRSRGAHKLPQVAWIVEADCIGCTKCIQACPVDAIV---------GGAKHMHTV 142

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           I  + C  C LC  ACPVD I   P
Sbjct: 143 IAPL-CTGCELCLPACPVDCIELHP 166


>gi|21228649|ref|NP_634571.1| putative ferredoxin [Methanosarcina mazei Go1]
 gi|20907149|gb|AAM32243.1| putative ferredoxin [Methanosarcina mazei Go1]
          Length = 266

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 30/92 (32%), Gaps = 14/92 (15%)

Query: 33  TINYPFEKGSTSPRFRGEHALR--RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT 90
           T      +   +  + G   L    +    + C  C  C  +CP  AI  E+      G 
Sbjct: 163 TSQDSDVQVPGTYPYGGVTELWTVDFIAVSDDCSQCGTCAEVCPVGAIDPENSNLTDTG- 221

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                      KCI C  C + CP +A    P
Sbjct: 222 -----------KCITCCACIKNCPQNARSMKP 242


>gi|147668763|ref|YP_001213581.1| reductive dehalogenase [Dehalococcoides sp. BAV1]
 gi|146269711|gb|ABQ16703.1| reductive dehalogenase [Dehalococcoides sp. BAV1]
          Length = 506

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 3/61 (4%)

Query: 59  GEERCIACKLCEAICPAQAI---TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           G E C  C +C   CP  AI                  + + +D+ KC +C +CQ  CP 
Sbjct: 386 GYEFCKTCGICADACPMGAIQKGEPSWDASEIWQNPGYLGWRLDLTKCSHCPVCQGVCPF 445

Query: 116 D 116
           +
Sbjct: 446 N 446



 Score = 33.9 bits (76), Expect = 7.7,   Method: Composition-based stats.
 Identities = 10/22 (45%), Positives = 14/22 (63%)

Query: 100 MIKCIYCGLCQEACPVDAIVEG 121
              C  CG+C +ACP+ AI +G
Sbjct: 387 YEFCKTCGICADACPMGAIQKG 408


>gi|332529347|ref|ZP_08405308.1| formate dehydrogenase, alpha subunit [Hylemonella gracilis ATCC
           19624]
 gi|332041145|gb|EGI77510.1| formate dehydrogenase, alpha subunit [Hylemonella gracilis ATCC
           19624]
          Length = 961

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 23/75 (30%), Gaps = 3/75 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     SG                  +C+ CG C E
Sbjct: 168 YFNYDASKCIVCNRCVRACEETQGTFALTISGRGFDSRVSPGQDEPFMASECVSCGACVE 227

Query: 112 ACPVDAIVEGPNFEF 126
           ACP   + E    E 
Sbjct: 228 ACPTATLQEKSVVEL 242


>gi|319764056|ref|YP_004127993.1| 4fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alicycliphilus denitrificans BC]
 gi|317118617|gb|ADV01106.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alicycliphilus denitrificans BC]
          Length = 699

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 26/71 (36%), Gaps = 9/71 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++RC  C  C + CPA A+             R          C+ CGLC+  CP  AI
Sbjct: 566 DKDRCTLCMSCVSACPASALQDNPQAPQLRFIERN---------CVQCGLCERTCPEGAI 616

Query: 119 VEGPNFEFATE 129
              P      E
Sbjct: 617 ALQPRLLLTPE 627



 Score = 40.1 bits (92), Expect = 0.10,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 9/55 (16%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C  C  IC A+AI  +   +         +  ++   C+ CG C   CP  A+
Sbjct: 318 VGCSACVDICSAEAIASDPARQ---------QVVVNPHLCVGCGACTTVCPTGAM 363



 Score = 37.4 bits (85), Expect = 0.61,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 13/30 (43%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           ID+  C  C  C  ACP  AI      + A
Sbjct: 192 IDLDLCTRCNACVAACPEGAIGLDYQIDMA 221



 Score = 37.4 bits (85), Expect = 0.70,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 32/88 (36%), Gaps = 16/88 (18%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             L   P   + C  C  C A CP  AI ++              Y IDM  C     C 
Sbjct: 185 QWLADNPIDLDLCTRCNACVAACPEGAIGLD--------------YQIDMAACTGHRDCV 230

Query: 111 EACPVD-AIVEGPNFEFATETRQELYYD 137
           +AC V  AI      E  +++  +L  D
Sbjct: 231 KACAVAGAIRFDREAEPQSQSF-DLVLD 257


>gi|262279872|ref|ZP_06057657.1| NADH:ubiquinone oxidoreductase [Acinetobacter calcoaceticus
           RUH2202]
 gi|262260223|gb|EEY78956.1| NADH:ubiquinone oxidoreductase [Acinetobacter calcoaceticus
           RUH2202]
          Length = 263

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 28/85 (32%), Gaps = 10/85 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E      +  G     +    E+ CI C  C + CP  AI               + + I
Sbjct: 68  ESSVWPVQTDGRPQRMKAIIREDECIGCTKCISACPVDAIIGSGK----------LMHTI 117

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPN 123
               C  C LC   CPVD I    +
Sbjct: 118 LTDLCTGCELCIPPCPVDCIDLVED 142


>gi|255526975|ref|ZP_05393868.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           carboxidivorans P7]
 gi|296185139|ref|ZP_06853549.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
 gi|255509334|gb|EET85681.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           carboxidivorans P7]
 gi|296049973|gb|EFG89397.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
          Length = 369

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 22/57 (38%), Gaps = 10/57 (17%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           + C ACK C   C  +AI +                 ID  KCI CG C   C  +A
Sbjct: 194 KNCKACKQCIKSCSQKAINLNENKAAS----------IDYSKCIGCGQCVAVCQFNA 240


>gi|227826901|ref|YP_002828680.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.14.25]
 gi|229584072|ref|YP_002842573.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.16.27]
 gi|238619027|ref|YP_002913852.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.16.4]
 gi|227458696|gb|ACP37382.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.14.25]
 gi|228019121|gb|ACP54528.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.16.27]
 gi|238380096|gb|ACR41184.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.16.4]
          Length = 455

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 17/92 (18%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
               L  Y NG  +  AC +CE  CP  AI ++          +    +ID IKC  CGL
Sbjct: 109 KPIYLSEYCNGLYK--ACNVCEFSCPYNAIKVD----------KKTGVNIDYIKCTSCGL 156

Query: 109 CQEACPVDAIVE-----GPNFEFATETRQELY 135
           C  +CPV AI          FE A    ++  
Sbjct: 157 CVASCPVSAIQFPSLSQNSIFELAKVKGEKRI 188



 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 22/68 (32%), Gaps = 7/68 (10%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
            + L        RC  C+ C   CP  A+ +                D D  +CI C LC
Sbjct: 290 PYILFDVSIDNNRCTLCESCVNWCPTSALKLRRDSGVE-------EIDFDPKRCIGCNLC 342

Query: 110 QEACPVDA 117
              CP   
Sbjct: 343 VNVCPESC 350


>gi|223558018|gb|ACM91024.1| NADH:ubiquinone oxidoreductase subunit [uncultured bacterium URE4]
          Length = 590

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 59  GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPV 115
              +CI C+ CE++C   Q++              +  +  ++    C+ CG C   CP 
Sbjct: 148 DANKCIMCRRCESVCHEYQSVGAIGAIERGFPAVVSTAFGKNLTDTNCVLCGQCVAVCPT 207

Query: 116 DAIVEGPN 123
            A+ E  N
Sbjct: 208 GALAEVDN 215


>gi|213419271|ref|ZP_03352337.1| pyruvate-flavodoxin oxidoreductase [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 561

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/119 (17%), Positives = 30/119 (25%), Gaps = 28/119 (23%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A       EE C  C  C A C
Sbjct: 444 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 497

Query: 74  PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           P  A                   +++   R   G +      +    C  C LC E CP
Sbjct: 498 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCP 554


>gi|200388028|ref|ZP_03214640.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199605126|gb|EDZ03671.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 287

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 25/78 (32%), Gaps = 12/78 (15%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            + C  C  C   CP   I  +                I   +C  CG C   CP  A+ 
Sbjct: 190 PQECRMCGACWRSCPENVIQFDDN-----------TLTIAAARCTGCGGCAAVCPHQALR 238

Query: 120 EGPNFEFATETRQELYYD 137
              + E A+ TR    + 
Sbjct: 239 LRFDVEPAS-TRHSAVHT 255



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 11/50 (22%)

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  +CPAQA ++  G              ID  +CI CG C   CPVDAI
Sbjct: 29  CADVCPAQAFSLAQGQVS-----------IDTTRCIACGDCLFVCPVDAI 67


>gi|119504735|ref|ZP_01626813.1| formate dehydrogenase alpha subunit [marine gamma proteobacterium
           HTCC2080]
 gi|119459340|gb|EAW40437.1| formate dehydrogenase alpha subunit [marine gamma proteobacterium
           HTCC2080]
          Length = 931

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 3/81 (3%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     +          +        +C+ CG C +
Sbjct: 163 YFSFDASKCIVCSRCVRACSEVQGTFALTIAARGFESKVSPSEENAFLDSECVSCGACVQ 222

Query: 112 ACPVDAIVEGPNFEFATETRQ 132
           ACP   + E    +    TR+
Sbjct: 223 ACPTATLQEKQVIDLGVPTRK 243


>gi|89902033|ref|YP_524504.1| 4Fe-4S ferredoxin [Rhodoferax ferrireducens T118]
 gi|89346770|gb|ABD70973.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodoferax ferrireducens
           T118]
          Length = 697

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 9/85 (10%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L      ++ C  C  C   CPA A+               +   +    C+ CGLC + 
Sbjct: 558 LGALVINKDACTLCLSCVNACPASALQDNPQA---------LELRLIEKNCVQCGLCVKT 608

Query: 113 CPVDAIVEGPNFEFATETRQELYYD 137
           CP  A+   P    + +  + +  +
Sbjct: 609 CPEQALTLLPRLSLSPQRNEAVVLN 633



 Score = 40.9 bits (94), Expect = 0.058,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 9/53 (16%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C  +C A AI  +         R   +  ++   CI CG C   CP  A+
Sbjct: 315 CTACIDVCSASAIESD---------RSRQQIKVNPNLCIGCGTCSTVCPTGAM 358



 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 13/30 (43%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           ID+  C  C  C   CP DAI      + +
Sbjct: 190 IDLDLCTRCNACLAVCPEDAIGLDYQVDLS 219



 Score = 34.3 bits (77), Expect = 6.4,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 27/76 (35%), Gaps = 15/76 (19%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             LR  P   + C  C  C A+CP  AI ++              Y +D+  C     C 
Sbjct: 183 QWLRSNPIDLDLCTRCNACLAVCPEDAIGLD--------------YQVDLSACQAHRACV 228

Query: 111 EACPVD-AIVEGPNFE 125
           + C V  AI      E
Sbjct: 229 KVCQVAGAIDFQREPE 244


>gi|51244622|ref|YP_064506.1| electron transport complex protein [Desulfotalea psychrophila
           LSv54]
 gi|50875659|emb|CAG35499.1| probable electron transport complex protein [Desulfotalea
           psychrophila LSv54]
          Length = 438

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 18/59 (30%), Gaps = 1/59 (1%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
             N    CI C  C   CP      E G     G R        +  C  CG C   CP
Sbjct: 363 DTNEPGPCIRCGWCLDACPMGLEPKEIGVFVEAG-RAEDTAQFGVFDCFECGSCAFVCP 420


>gi|148262605|ref|YP_001229311.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Geobacter uraniireducens Rf4]
 gi|146396105|gb|ABQ24738.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Geobacter
           uraniireducens Rf4]
          Length = 368

 Score = 45.1 bits (105), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 23/63 (36%), Gaps = 11/63 (17%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C AC +C   C   AI I  G              ID  KC  CG C  AC   AI  
Sbjct: 193 KYCTACGICLKSCAHDAIAIIEGKAV-----------IDPEKCTGCGRCITACLQKAINV 241

Query: 121 GPN 123
             N
Sbjct: 242 QWN 244


>gi|325290633|ref|YP_004266814.1| nitrite and sulphite reductase 4Fe-4S region [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324966034|gb|ADY56813.1| nitrite and sulphite reductase 4Fe-4S region [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 289

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 11/66 (16%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C  C +C   C   AIT                  +D  KC  CG C ++CP DA    P
Sbjct: 168 CTLCGVCAKACRDGAITQTETELL-----------LDESKCNNCGRCVKSCPFDAWRGEP 216

Query: 123 NFEFAT 128
            +  + 
Sbjct: 217 GYILSF 222


>gi|283852917|ref|ZP_06370177.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfovibrio sp.
           FW1012B]
 gi|283571675|gb|EFC19675.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfovibrio sp.
           FW1012B]
          Length = 1217

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 33/107 (30%), Gaps = 19/107 (17%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV-------- 94
           TS   +   A+      +E CI C  C  +CP   I                        
Sbjct: 669 TSRYEKRGVAINIPHWIKENCIQCNQCSLVCPHATIRPFLADEAEMAGAPASYDTLPASG 728

Query: 95  --------RYDIDMIKCIYCGLCQEACPV--DAIVEGP-NFEFATET 130
                   R  +  + C+ CG C + CP    A+V  P   E A + 
Sbjct: 729 KELKGLAYRMQVFPMDCMGCGSCADVCPAKQKALVMKPLETEVAEQN 775


>gi|291613327|ref|YP_003523484.1| electron transport complex, RnfABCDGE type, B subunit [Sideroxydans
           lithotrophicus ES-1]
 gi|291583439|gb|ADE11097.1| electron transport complex, RnfABCDGE type, B subunit [Sideroxydans
           lithotrophicus ES-1]
          Length = 178

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 10/61 (16%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C  C  +CP  AI   +             + +    C  CG C+E CP +++   P
Sbjct: 110 CIGCTRCFKVCPTDAIMGAA----------QQIHVVFREACTACGKCEEVCPTESVKLQP 159

Query: 123 N 123
            
Sbjct: 160 I 160



 Score = 34.7 bits (78), Expect = 4.3,   Method: Composition-based stats.
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIV 119
             +  ++    CI C  C + CP DAI+
Sbjct: 99  VPMVAEVKEEICIGCTRCFKVCPTDAIM 126


>gi|225012610|ref|ZP_03703045.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Flavobacteria
           bacterium MS024-2A]
 gi|225003143|gb|EEG41118.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Flavobacteria
           bacterium MS024-2A]
          Length = 504

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 18/53 (33%), Gaps = 9/53 (16%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           +CI+C  C   C           R           +I    C+ CG+C   CP
Sbjct: 434 QCISCGNCSTYCEMGIDVRAYAQRGE---------NIVRSSCVGCGVCSAVCP 477


>gi|126700296|ref|YP_001089193.1| pyruvate-flavodoxin oxidoreductase [Clostridium difficile 630]
 gi|254976274|ref|ZP_05272746.1| pyruvate-flavodoxin oxidoreductase [Clostridium difficile
           QCD-66c26]
 gi|255093660|ref|ZP_05323138.1| pyruvate-flavodoxin oxidoreductase [Clostridium difficile CIP
           107932]
 gi|255315409|ref|ZP_05356992.1| pyruvate-flavodoxin oxidoreductase [Clostridium difficile
           QCD-76w55]
 gi|255651191|ref|ZP_05398093.1| pyruvate-flavodoxin oxidoreductase [Clostridium difficile
           QCD-37x79]
 gi|260684256|ref|YP_003215541.1| pyruvate-flavodoxin oxidoreductase [Clostridium difficile CD196]
 gi|260687915|ref|YP_003219049.1| pyruvate-flavodoxin oxidoreductase [Clostridium difficile R20291]
 gi|115251733|emb|CAJ69568.1| Pyruvate-ferredoxin oxidoreductase [Clostridium difficile]
 gi|260210419|emb|CBA64837.1| pyruvate-flavodoxin oxidoreductase [Clostridium difficile CD196]
 gi|260213932|emb|CBE05995.1| pyruvate-flavodoxin oxidoreductase [Clostridium difficile R20291]
          Length = 1179

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 18/81 (22%)

Query: 61  ERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRYDID--MIKCI 104
           + CI C  C  ICP                A       +        ++Y I    + C 
Sbjct: 687 DNCIQCNQCSFICPHACIRPVLVTEEELANAPEGFEAKKALGKGLEGLKYRIQVSPLDCT 746

Query: 105 YCGLCQEACP--VDAIVEGPN 123
            CG C + CP    A+V  P 
Sbjct: 747 GCGNCADICPAKEKALVMKPI 767


>gi|50306045|ref|XP_452984.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49642117|emb|CAH01835.1| KLLA0C17556p [Kluyveromyces lactis]
          Length = 607

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           K C   C      +++G  C +    +    I    CI CG+C + CP DAI    
Sbjct: 19  KKCRQECKRSCPVVKTGKLCIEVMPTSKIAFISENLCIGCGICVKKCPFDAIQIIN 74


>gi|78221981|ref|YP_383728.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Geobacter
           metallireducens GS-15]
 gi|78193236|gb|ABB31003.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Geobacter
           metallireducens GS-15]
          Length = 368

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 32/122 (26%), Gaps = 27/122 (22%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           +  F   L+      +T                +H+       E  C  C LC   C   
Sbjct: 159 LTGFGGALKNLGMGCSTR----------EGKMTQHSTVAPKIAETYCTGCGLCLKACAHD 208

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
           AI I  G              +D   C  C  C   CP  A+    N         +L  
Sbjct: 209 AIAIIEGKA-----------KLDPAHCAGCSRCITVCPTKAVQIQWNEA------ADLVM 251

Query: 137 DK 138
            K
Sbjct: 252 KK 253


>gi|317492085|ref|ZP_07950516.1| electron transport complex [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316919968|gb|EFV41296.1| electron transport complex [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 202

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 25/76 (32%), Gaps = 10/76 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            EE CI C  C   CP  AI   +             + +    C  C LC   CP D I
Sbjct: 113 DEENCIGCTKCIQACPVDAIVGAT----------RAMHTVVSDLCTGCNLCVAPCPTDCI 162

Query: 119 VEGPNFEFATETRQEL 134
              P        + +L
Sbjct: 163 TLVPVPTTTANWKWDL 178



 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C  C +ACPVDAI
Sbjct: 112 IDEENCIGCTKCIQACPVDAI 132


>gi|317057598|ref|YP_004106065.1| NADH dehydrogenase (quinone) [Ruminococcus albus 7]
 gi|315449867|gb|ADU23431.1| NADH dehydrogenase (quinone) [Ruminococcus albus 7]
          Length = 630

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 10/66 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L +Y    ++C  C LC   CPA AIT                + ID  KCI CG+C   
Sbjct: 572 LLQYEIIADKCKGCTLCARNCPANAITGT----------VKNPHVIDTTKCIKCGVCMNN 621

Query: 113 CPVDAI 118
           C   AI
Sbjct: 622 CKFGAI 627



 Score = 38.5 bits (88), Expect = 0.28,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 18/43 (41%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            I+         +  ++Y+I   KC  C LC   CP +AI   
Sbjct: 558 HIKEKKCPAGVCKNLLQYEIIADKCKGCTLCARNCPANAITGT 600


>gi|256810301|ref|YP_003127670.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus fervens AG86]
 gi|256793501|gb|ACV24170.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus fervens AG86]
          Length = 405

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 41/114 (35%), Gaps = 14/114 (12%)

Query: 9   SFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKL 68
           S  +L EF        + + K                R+R    +  +P    RCI+C+ 
Sbjct: 4   SLWYLYEFAR------KKWIKKFVDAKSEESSYIPPERYRKVPPVVEFPE---RCISCEA 54

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+  CPA AI +      +    +     ID   CI C  C EACP   +    
Sbjct: 55  CKESCPAFAIELIYNESYNKKLPK-----IDEGSCIACANCVEACPTGVLEIDK 103



 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 9/65 (13%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
             Y   E+ CI C++C+ +C   A+ I    +            I    C+ CG C+  C
Sbjct: 270 ICYVIDEDLCIGCRICQKVCHVNAVKISKEIKLPY---------IVPELCVACGACEREC 320

Query: 114 PVDAI 118
           PV AI
Sbjct: 321 PVGAI 325



 Score = 40.9 bits (94), Expect = 0.054,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C+ C LC  +CP  AI            R+ + Y ID   CI C +CQ+ C V+A+   
Sbjct: 241 ECVKCGLCIEVCPTTAIRTH---VPIIPKRKDICYVIDEDLCIGCRICQKVCHVNAVKIS 297

Query: 122 PN 123
             
Sbjct: 298 KE 299



 Score = 40.9 bits (94), Expect = 0.065,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDG----TRRTVRYDIDMIKCIYCGLCQEACP 114
            E  CIAC  C   CP   + I+      +G      +     ID   C+ CG C+ ACP
Sbjct: 80  DEGSCIACANCVEACPTGVLEIDKHRAETEGLFFDIPKYTNLIIDEEVCVRCGNCERACP 139

Query: 115 VDAI 118
           V+ I
Sbjct: 140 VNVI 143



 Score = 37.4 bits (85), Expect = 0.73,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 27/75 (36%), Gaps = 11/75 (14%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           +  T   F            EE C+ C  CE  CP   I            R+  RY ID
Sbjct: 105 RAETEGLFFDIPKYTNLIIDEEVCVRCGNCERACPVNVIK-----------RKEGRYVID 153

Query: 100 MIKCIYCGLCQEACP 114
              CI C  C +ACP
Sbjct: 154 RASCISCKECIKACP 168



 Score = 37.0 bits (84), Expect = 0.90,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 16/56 (28%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           CI C  C+ +C  +    E                     C+ CGLC E CP  AI
Sbjct: 218 CITCGTCKDVCIGEIDLKEKKVVE----------------CVKCGLCIEVCPTTAI 257


>gi|239906643|ref|YP_002953384.1| pyruvate-flavodoxin oxidoreductase [Desulfovibrio magneticus RS-1]
 gi|239796509|dbj|BAH75498.1| pyruvate-flavodoxin oxidoreductase [Desulfovibrio magneticus RS-1]
          Length = 1213

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 27/90 (30%), Gaps = 18/90 (20%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV---------------- 94
            A+      +E CI C  C  +CP   I                                
Sbjct: 677 VAINIPHWIKENCIQCNQCSYVCPHATIRPFLADEAEMAGAPASFDTLPATGKELKGLAY 736

Query: 95  RYDIDMIKCIYCGLCQEACPV--DAIVEGP 122
           R  +  + C+ CG C + CP    A+V  P
Sbjct: 737 RMQVFPMDCMGCGSCADVCPAKQKALVMKP 766


>gi|255518074|ref|ZP_05385750.1| pyruvate-flavodoxin oxidoreductase [Clostridium difficile
           QCD-97b34]
          Length = 1179

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 18/81 (22%)

Query: 61  ERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRYDID--MIKCI 104
           + CI C  C  ICP                A       +        ++Y I    + C 
Sbjct: 687 DNCIQCNQCSFICPHACIRPVLVTEEELANAPEGFEAKKALGKGLEGLKYRIQVSPLDCT 746

Query: 105 YCGLCQEACP--VDAIVEGPN 123
            CG C + CP    A+V  P 
Sbjct: 747 GCGNCADICPAKEKALVMKPI 767


>gi|222530184|ref|YP_002574066.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Caldicellulosiruptor bescii DSM 6725]
 gi|222457031|gb|ACM61293.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Caldicellulosiruptor bescii DSM 6725]
          Length = 373

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 10/57 (17%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
            +C+ C +C   C   AIT+    +            ID  KC+ CG C   C   A
Sbjct: 194 SKCVGCGMCVKSCAQLAITLNEKKKAV----------IDYEKCVGCGQCVAVCQFGA 240



 Score = 34.3 bits (77), Expect = 5.1,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 4/60 (6%)

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVR----YDIDMIKCIYCGLCQEACPVDAIVE 120
             K  E      AI          G +  +       I   KC+ CG+C ++C   AI  
Sbjct: 154 HFKGHEMTGFGGAIKNIGMGSGSRGGKLFMHSSSKPVIKTSKCVGCGMCVKSCAQLAITL 213


>gi|187438956|gb|ACD10930.1| [FeFe]-hydrogenase [Blastocystis sp. NandII]
          Length = 758

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 3/68 (4%)

Query: 57  PNGEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMI-KCIYCGLCQEAC 113
                RC+ CK C   C        +E+ P+          Y +    +CI CG C   C
Sbjct: 151 HRDMSRCVDCKRCARACSELQGMNVLENNPQEGGFPVVPTGYHLLKDTECISCGQCNVVC 210

Query: 114 PVDAIVEG 121
           P  AIVE 
Sbjct: 211 PTGAIVEQ 218


>gi|167750764|ref|ZP_02422891.1| hypothetical protein EUBSIR_01742 [Eubacterium siraeum DSM 15702]
 gi|167656199|gb|EDS00329.1| hypothetical protein EUBSIR_01742 [Eubacterium siraeum DSM 15702]
          Length = 597

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 32/96 (33%), Gaps = 15/96 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            LRY FK +   +   +K            L  Y   + +C  C  C   CP  AI+   
Sbjct: 514 TLRY-FKDEYIAHVKDKKCPAGVC----QDLLTYKIIDLKCKGCTACARGCPVGAISGTV 568

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                          ID  KCI CG C   C   AI
Sbjct: 569 KQPHS----------IDTAKCIKCGACMAKCKFGAI 594



 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/51 (21%), Positives = 16/51 (31%)

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
                    ++         +  + Y I  +KC  C  C   CPV AI   
Sbjct: 517 YFKDEYIAHVKDKKCPAGVCQDLLTYKIIDLKCKGCTACARGCPVGAISGT 567


>gi|218779004|ref|YP_002430322.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218760388|gb|ACL02854.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 403

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 12/86 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC-PVDA 117
             ++CI C  C  ICP +A+++                 I+  +CI CGLC   C    A
Sbjct: 291 DADKCIGCNQCVEICPMEALSLVDDKAV-----------INHTRCIGCGLCVPKCGKAKA 339

Query: 118 IVEGPNFEFATETRQELYYDKERLLN 143
           I     +     ++  L Y  ER+  
Sbjct: 340 ISLKERYGHKPPSKDVLAYAAERIEE 365


>gi|156938165|ref|YP_001435961.1| nitrate reductase, subunit G [Ignicoccus hospitalis KIN4/I]
 gi|156567149|gb|ABU82554.1| putative nitrate reductase, subunit G [Ignicoccus hospitalis
           KIN4/I]
          Length = 320

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 25/73 (34%), Gaps = 3/73 (4%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR---TVRYDIDMIKCIYCGLCQEA 112
             N   +C+ C LC   C               G +     V YD+    C  C  C E 
Sbjct: 111 DENFYSKCVRCGLCYTACTHMNYHTLKLRGLEKGLKYVGTPVVYDVMNYPCELCMRCTEV 170

Query: 113 CPVDAIVEGPNFE 125
           CP DA+ E    E
Sbjct: 171 CPTDALKEVKPSE 183



 Score = 37.4 bits (85), Expect = 0.63,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 30/89 (33%), Gaps = 9/89 (10%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD--AIVEGP- 122
           CK C + CP       S           V   +   +C  CGLC  ACPV   AI   P 
Sbjct: 204 CKSCASACPRG-----SEVFDFHFNEWGVHTRVKGEECNGCGLCVRACPVPGAAIHVLPK 258

Query: 123 -NFEFATETRQELYYDKERLLNNGDRWES 150
             +E   +  +      +  L    + E 
Sbjct: 259 EEYEKRIKNFKNTGMTYDEYLELIKKAEE 287


>gi|254361779|ref|ZP_04977914.1| NADH dehydrogenase (ubiquinone) [Mannheimia haemolytica PHL213]
 gi|261494020|ref|ZP_05990523.1| electron transport complex protein RnfC [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261496221|ref|ZP_05992627.1| electron transport complex protein RnfC [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|153093314|gb|EDN74310.1| NADH dehydrogenase (ubiquinone) [Mannheimia haemolytica PHL213]
 gi|261308173|gb|EEY09470.1| electron transport complex protein RnfC [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261310186|gb|EEY11386.1| electron transport complex protein RnfC [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 764

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 34/107 (31%), Gaps = 3/107 (2%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E  CI C  C   CP   +  +               +  +  CI CG+C   CP  
Sbjct: 379 PEPERSCIRCSSCSDACPVG-LLPQQLYWFARAEDHDKSKEYHLDACIECGVCAYVCP-S 436

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            I     F       +E+     +      R+E+   R +  +   R
Sbjct: 437 YIPLIQYFRQEKAKIEEIEEKARKAEEAKIRFEAREAR-LQKERDAR 482


>gi|153215071|ref|ZP_01949788.1| RnfC-related protein [Vibrio cholerae 1587]
 gi|124114934|gb|EAY33754.1| RnfC-related protein [Vibrio cholerae 1587]
          Length = 505

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 29/105 (27%), Gaps = 12/105 (11%)

Query: 13  LKEFVGA---FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69
           L   +         L +          P  K +        + L    N    CI C  C
Sbjct: 333 LPRLIMGGPMMGFTLPH-------AQVPITKTANCILAPTRNELTSSDNEMA-CIRCGQC 384

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
              CP   +  +               ++++  CI CG C   CP
Sbjct: 385 AEACPVS-LLPQQLQWHAKAEDFDKCEELNLKDCIECGACAYVCP 428



 Score = 35.5 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 10/13 (76%), Positives = 10/13 (76%)

Query: 103 CIYCGLCQEACPV 115
           CI CG C EACPV
Sbjct: 378 CIRCGQCAEACPV 390


>gi|123454890|ref|XP_001315194.1| dihydroorotate dehydrogenase family protein [Trichomonas vaginalis
           G3]
 gi|121897863|gb|EAY02971.1| dihydroorotate dehydrogenase family protein [Trichomonas vaginalis
           G3]
          Length = 365

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 27/81 (33%), Gaps = 11/81 (13%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
            E      +      L       E+C+ C  C   C  +A+ +E G     G        
Sbjct: 292 HEVIGLGLKHPPLAQLNPPKIEAEKCVGCGTCVTSCLYEALQLEDGIAKVTG-------- 343

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
               KC  CGLC   CP  AI
Sbjct: 344 ---EKCFRCGLCYTRCPTGAI 361


>gi|320353709|ref|YP_004195048.1| Fe-S cluster domain-containing protein [Desulfobulbus propionicus
           DSM 2032]
 gi|320122211|gb|ADW17757.1| Fe-S cluster domain protein [Desulfobulbus propionicus DSM 2032]
          Length = 579

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 11/67 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              +  C  C  C   CP +AI ++                I    C+YCG+C   CP  
Sbjct: 8   YTEKHECQDCYKCVRQCPVKAIRVQDAYA-----------TIVDEMCVYCGICVSICPNT 56

Query: 117 AIVEGPN 123
           A     +
Sbjct: 57  AKHVRND 63


>gi|282165438|ref|YP_003357823.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit A
           [Methanocella paludicola SANAE]
 gi|282157752|dbj|BAI62840.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit A
           [Methanocella paludicola SANAE]
          Length = 659

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 6/64 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++ C  C +C ++CP +AIT+       DG RR    D     C  CG C  ACP  AI
Sbjct: 582 DDDLCSGCGVCGSLCPYKAITLNE---IEDGKRRASVND---AMCKGCGTCGAACPAKAI 635

Query: 119 VEGP 122
               
Sbjct: 636 TMQH 639



 Score = 34.3 bits (77), Expect = 5.7,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 19/59 (32%), Gaps = 7/59 (11%)

Query: 62  RCIACKLCEAICPAQAIT-------IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
            C  C  C A+CP                          ++Y +D   CI C LC + C
Sbjct: 248 DCNGCGDCAAVCPVTKGNEFDLGLGPRKAIYVPFPQAVPLKYTVDFNSCIKCELCVKKC 306


>gi|169831077|ref|YP_001717059.1| aldo/keto reductase [Candidatus Desulforudis audaxviator MP104C]
 gi|169637921|gb|ACA59427.1| aldo/keto reductase [Candidatus Desulforudis audaxviator MP104C]
          Length = 316

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 20/56 (35%), Gaps = 10/56 (17%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C+AC  C   C A A+ I+   R                 C  CG C   CP  AI
Sbjct: 268 CLACGECVRRCSAGALYIKDDGRAAA----------RQELCNLCGYCASVCPEFAI 313


>gi|166031919|ref|ZP_02234748.1| hypothetical protein DORFOR_01620 [Dorea formicigenerans ATCC
           27755]
 gi|166028372|gb|EDR47129.1| hypothetical protein DORFOR_01620 [Dorea formicigenerans ATCC
           27755]
          Length = 263

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 27/89 (30%), Gaps = 11/89 (12%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
            K     P++          +         +  CI CK+CE  C   A+ +         
Sbjct: 185 RKLIEIVPYDMKHLVKCNSKDKGKDVMKACKVGCIGCKMCEKACQFDAVKVLDNVAH--- 241

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                   ID  KC  CG C   CP   I
Sbjct: 242 --------IDPEKCTGCGACAAKCPKKVI 262


>gi|163751796|ref|ZP_02159013.1| electron transport complex protein RnfB [Shewanella benthica KT99]
 gi|161328360|gb|EDP99520.1| electron transport complex protein RnfB [Shewanella benthica KT99]
          Length = 189

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 24/66 (36%), Gaps = 10/66 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E+ CI C  C   CP  AI               + + +    C  C LC E CPVD
Sbjct: 108 YIREDECIGCTKCIQACPVDAILGTGK----------LMHTVITDYCTGCDLCVEPCPVD 157

Query: 117 AIVEGP 122
            I   P
Sbjct: 158 CIDMLP 163


>gi|110667103|ref|YP_656914.1| NADH:ubiquinone oxidoreductase / formate dehydrogenase alpha
           subunit I [Haloquadratum walsbyi DSM 16790]
 gi|109624850|emb|CAJ51259.1| NADH:ubiquinone oxidoreductase / formate dehydrogenase alpha
           subunit I [Haloquadratum walsbyi DSM 16790]
          Length = 347

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 4/68 (5%)

Query: 57  PNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
                +CI C  C   C     A  + +E   +      +     ++   C+ CG C   
Sbjct: 192 QIDRNKCILCNRCVEACNDVQVAGVLQMEGSGQDTRIGFQNDSPTMEDSTCVSCGHCATV 251

Query: 113 CPVDAIVE 120
           CP  ++VE
Sbjct: 252 CPTGSLVE 259


>gi|328952559|ref|YP_004369893.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfobacca acetoxidans DSM 11109]
 gi|328452883|gb|AEB08712.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfobacca acetoxidans DSM 11109]
          Length = 1003

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 30/94 (31%), Gaps = 11/94 (11%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE-------SGPRCHDGTRRTVRYDI 98
            FR             +C  C  C  +CP +A+                      + + I
Sbjct: 96  HFRAVLNNYPRYLDPVKCTGCGDCRKVCPVRAVNEFNAGLDLREATYIRYPQAVPLAFAI 155

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           D   CI CGLC + C   AI    N+      R+
Sbjct: 156 DRQVCIGCGLCGQVCLAGAI----NYLDTARQRE 185



 Score = 37.8 bits (86), Expect = 0.51,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 21/77 (27%), Gaps = 10/77 (12%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
             R   +        +RC AC +C   CP     I                 I+   C  
Sbjct: 923 DIRQTISGVIAYVEPDRCAACLVCVKTCPFGVPRINEDNVSE----------INTALCQG 972

Query: 106 CGLCQEACPVDAIVEGP 122
           CG C   CP   I    
Sbjct: 973 CGTCASECPAKVIQLAH 989


>gi|325929561|ref|ZP_08190675.1| electron transport complex, RnfABCDGE type, B subunit [Xanthomonas
           perforans 91-118]
 gi|325540071|gb|EGD11699.1| electron transport complex, RnfABCDGE type, B subunit [Xanthomonas
           perforans 91-118]
          Length = 142

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 31/85 (36%), Gaps = 11/85 (12%)

Query: 39  EKGSTSPRFRGEHAL-RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
                  R RG H L +     E  CI C  C   CP  AI          G  + +   
Sbjct: 66  VPARPYDRSRGAHKLPQVAWIVEADCIGCTKCIQACPVDAIV---------GGAKHMHTV 116

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           I  + C  C LC  ACPVD I   P
Sbjct: 117 IAPL-CTGCELCLPACPVDCIELHP 140


>gi|291278693|ref|YP_003495528.1| 4Fe-4S ferredoxin [Deferribacter desulfuricans SSM1]
 gi|290753395|dbj|BAI79772.1| 4Fe-4S ferredoxin [Deferribacter desulfuricans SSM1]
          Length = 353

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 13/65 (20%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E+C AC LC+  C + AITI              +Y     KC  C  C   CP  AI
Sbjct: 190 HTEKCTACGLCKDACASDAITI-------------SKYAEITEKCTGCARCIAVCPQGAI 236

Query: 119 VEGPN 123
               +
Sbjct: 237 GINWD 241


>gi|257783898|ref|YP_003179115.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Atopobium parvulum DSM 20469]
 gi|257472405|gb|ACV50524.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Atopobium
           parvulum DSM 20469]
          Length = 328

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 15/66 (22%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           + +Y   +  C++C  C   C       ++                    CI CG C + 
Sbjct: 236 ILQYRVDKNTCVSCGKCARTCKMDVDITKNNAALE---------------CIRCGECIKV 280

Query: 113 CPVDAI 118
           CPV AI
Sbjct: 281 CPVHAI 286


>gi|322419390|ref|YP_004198613.1| electron transfer flavoprotein alpha/beta-subunit [Geobacter sp.
           M18]
 gi|320125777|gb|ADW13337.1| Electron transfer flavoprotein alpha/beta-subunit [Geobacter sp.
           M18]
          Length = 437

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 22/105 (20%)

Query: 62  RCIACK-LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           +CIAC   C+++CP   + +                 I+  KCI C  C + CP  A+  
Sbjct: 20  KCIACGARCQSVCPVNGVEMSEQGEP----------IIEAEKCIGCVKCVKVCPAGALEM 69

Query: 121 GPNFEFATETRQEL--YYDKERLLNNGDRWESEIVRNIVTDSPYR 163
                    T +EL      E+  + G+  + E +      S Y+
Sbjct: 70  -------FYTPEELAIIAGFEK--HGGEEVDDEELERRKKISAYK 105


>gi|256810303|ref|YP_003127672.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus fervens AG86]
 gi|256793503|gb|ACV24172.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus fervens AG86]
          Length = 247

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 10/71 (14%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
             +  L+ Y   E +CI C +C   CP  AI +                D+++  C+ CG
Sbjct: 116 HRKIRLKNYELDESKCIKCGICARYCPTDAIKVVIRKSI----------DVNLDSCMGCG 165

Query: 108 LCQEACPVDAI 118
            C E CP   I
Sbjct: 166 ACAEVCPKKCI 176



 Score = 42.0 bits (97), Expect = 0.025,   Method: Composition-based stats.
 Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 15/74 (20%)

Query: 60  EERCIACKLCEAICPAQAITIESGPR---------------CHDGTRRTVRYDIDMIKCI 104
            ++C+ C++C   CP  AI +  G                       R   Y++D  KCI
Sbjct: 73  HDKCVKCEICAQTCPVGAIYVIEGKAEINNDEVNYEIKNKVIPHRKIRLKNYELDESKCI 132

Query: 105 YCGLCQEACPVDAI 118
            CG+C   CP DAI
Sbjct: 133 KCGICARYCPTDAI 146



 Score = 41.6 bits (96), Expect = 0.034,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 11/67 (16%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           R     ++ C+ C +C   CP  AI  E                I+  KCI CG C + C
Sbjct: 189 RDIEVNKDLCVGCFVCIEECPINAIEQEGDKV-----------KINKDKCILCGRCADVC 237

Query: 114 PVDAIVE 120
           P +AI  
Sbjct: 238 PANAIDM 244



 Score = 37.8 bits (86), Expect = 0.52,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + C+ C  C  +CP + I +ES       TR     +++   C+ C +C E CP++AI
Sbjct: 157 NLDSCMGCGACAEVCPKKCIRVESDIGEVIKTRDI---EVNKDLCVGCFVCIEECPINAI 213



 Score = 35.5 bits (80), Expect = 2.3,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 9/63 (14%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E +C+ C LC   CP  AI      +                KC+ C +C + CPV 
Sbjct: 39  YVNETKCVRCNLCYKECPVDAIEKAKIKKPAKIIH---------DKCVKCEICAQTCPVG 89

Query: 117 AIV 119
           AI 
Sbjct: 90  AIY 92


>gi|242278076|ref|YP_002990205.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
 gi|242120970|gb|ACS78666.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
          Length = 652

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 7/64 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +RCI C  C + CP  AI            R   + D+    C  CG+C   CP  AI
Sbjct: 580 DIKRCIGCGKCISTCPFGAIK-------EIDFRGQPKADVIETICQGCGICTSTCPQGAI 632

Query: 119 VEGP 122
               
Sbjct: 633 QLQH 636



 Score = 40.9 bits (94), Expect = 0.056,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 13/75 (17%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGP--------RCHDGTRRTVRYDIDMIKCIY--- 105
               ++C  C +C   CP++                          +  ID   CI    
Sbjct: 236 YVDWDKCTGCGICMEKCPSKKADNPFDEELGKTTAINIPFPQAIPKKAVIDPNFCIKIKR 295

Query: 106 --CGLCQEACPVDAI 118
             CG+C + CP +AI
Sbjct: 296 DKCGVCAKVCPSEAI 310


>gi|45358013|ref|NP_987570.1| ferredoxin [Methanococcus maripaludis S2]
 gi|44920770|emb|CAF30006.1| ferredoxin [Methanococcus maripaludis S2]
          Length = 285

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 11/62 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +E C  C  C  +C   AI+I                 +    C  CGLC  ACPV AI
Sbjct: 66  DKELCTNCGECSKLCKFNAISITPN-----------NSTVFEKLCHDCGLCYIACPVQAI 114

Query: 119 VE 120
            E
Sbjct: 115 SE 116



 Score = 34.3 bits (77), Expect = 5.1,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 14/37 (37%)

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
               ID   C  CG C + C  +AI   PN     E 
Sbjct: 61  KVPKIDKELCTNCGECSKLCKFNAISITPNNSTVFEK 97


>gi|295107352|emb|CBL04895.1| Uncharacterized conserved protein [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 208

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 26/75 (34%), Gaps = 10/75 (13%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103
                G    R      + C  C  C A CP   I      R            I+   C
Sbjct: 141 PFALGGGPVAREGFTVSDACTGCGACFAACPQGCIAPRPDGRAF----------IEQQAC 190

Query: 104 IYCGLCQEACPVDAI 118
           ++CG C+E CP DAI
Sbjct: 191 LHCGRCREVCPSDAI 205


>gi|289596483|ref|YP_003483179.1| formate dehydrogenase, alpha subunit [Aciduliprofundum boonei T469]
 gi|289534270|gb|ADD08617.1| formate dehydrogenase, alpha subunit [Aciduliprofundum boonei T469]
          Length = 879

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 28/95 (29%), Gaps = 1/95 (1%)

Query: 25  RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84
           +  F          EK            +   PN    C  C    ++     + +  G 
Sbjct: 103 KELFSKYGIEIKSDEKREAPDL-VDNPFISFNPNACVSCFRCVQACSLVKENHVLVREGR 161

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
                    +   +    C +CG C +ACP  A++
Sbjct: 162 GAETRIVAGINEALKDAGCAFCGACVDACPTGALM 196


>gi|253564715|ref|ZP_04842171.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Bacteroides sp. 3_2_5]
 gi|251946180|gb|EES86557.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Bacteroides sp. 3_2_5]
          Length = 387

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 6/56 (10%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
             C  C  C + C   AI ++   +        +   I+  +CI CGLC + CPV 
Sbjct: 8   YDCCGCTACTSACNRGAIIMQEDEQG------FLYPHINTTQCIDCGLCNKVCPVF 57


>gi|239624057|ref|ZP_04667088.1| 4Fe-4S ferredoxin [Clostridiales bacterium 1_7_47_FAA]
 gi|239522088|gb|EEQ61954.1| 4Fe-4S ferredoxin [Clostridiales bacterium 1_7_47FAA]
          Length = 366

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 25/67 (37%), Gaps = 11/67 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
                 C+ C  C   C   AIT+ESG              ID   C  CG C   CP+D
Sbjct: 189 HVDAGLCVGCGACVRQCAHGAITLESGKAS-----------IDTAVCAGCGRCIGTCPMD 237

Query: 117 AIVEGPN 123
           A+    N
Sbjct: 238 AVAADNN 244


>gi|224368795|ref|YP_002602956.1| FdhA5 [Desulfobacterium autotrophicum HRM2]
 gi|223691511|gb|ACN14794.1| FdhA5 [Desulfobacterium autotrophicum HRM2]
          Length = 921

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 32/104 (30%), Gaps = 10/104 (9%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC---PAQAI 78
           L  +Y  KA   +  P  +            +R       RCI C  C   C        
Sbjct: 138 LAFKYQVKA---VGIPLAECKFPMETGNPLIVR----DFSRCILCGRCVQACRQVQVNNA 190

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                              +   +C++CG C +ACPV A+ E  
Sbjct: 191 IDFGYRGADAKIVAGTDVSLKDSECVFCGECIQACPVGALFEKK 234


>gi|204929685|ref|ZP_03220759.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204321404|gb|EDZ06604.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|322613728|gb|EFY10667.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322619529|gb|EFY16405.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322625034|gb|EFY21863.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322629523|gb|EFY26299.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322634046|gb|EFY30783.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322635516|gb|EFY32227.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322639808|gb|EFY36487.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322644430|gb|EFY40971.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322648575|gb|EFY45024.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322655205|gb|EFY51514.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322658252|gb|EFY54518.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322664253|gb|EFY60450.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322669420|gb|EFY65569.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322673147|gb|EFY69253.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322676539|gb|EFY72607.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322683289|gb|EFY79303.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322685825|gb|EFY81818.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323194768|gb|EFZ79956.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323199544|gb|EFZ84635.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323204681|gb|EFZ89679.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323208129|gb|EFZ93074.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323210147|gb|EFZ95048.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323217015|gb|EGA01737.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323221813|gb|EGA06217.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323225008|gb|EGA09263.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323229297|gb|EGA13421.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323235388|gb|EGA19472.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323237426|gb|EGA21489.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323245180|gb|EGA29181.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323248883|gb|EGA32809.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323253170|gb|EGA37002.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323255404|gb|EGA39172.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323262037|gb|EGA45602.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323266348|gb|EGA49836.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323269821|gb|EGA53271.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 287

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 22/73 (30%), Gaps = 11/73 (15%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            + C  C  C   CP   I  +                I   +C  CG C   CP  A+ 
Sbjct: 190 PQECRMCGACWRSCPENVIQFDDN-----------TLTIAAARCTGCGGCAAVCPHQALR 238

Query: 120 EGPNFEFATETRQ 132
              + E A+    
Sbjct: 239 LRFDVEPASTRHS 251



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 11/50 (22%)

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  +CPAQA ++  G              ID  +CI CG C   CPVDAI
Sbjct: 29  CADVCPAQAFSLAQGQVS-----------IDTTRCIACGDCLFVCPVDAI 67


>gi|148283121|ref|YP_431142.2| formate dehydrogenase subunit alpha [Moorella thermoacetica ATCC
           39073]
          Length = 899

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 16/102 (15%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP------AQAITIESGPRCHDGT 90
           P ++            +R Y     +CI C  C   C          +  +        T
Sbjct: 124 PVKREELPVLKENPFIVRDY----NKCIVCGRCVRACQEVQVQRVVDLVGKGSAARVGAT 179

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVE------GPNFEF 126
           +      ++   C++CG C + CPV A+ E      G  +EF
Sbjct: 180 KAGAEVSLEEGGCVFCGNCVQVCPVGALTEKAGLGQGREWEF 221



 Score = 35.1 bits (79), Expect = 3.2,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 18/81 (22%), Gaps = 8/81 (9%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI-- 98
                  R            E C+ C+                       +R     +  
Sbjct: 76  TPVIEEMRKGIIEMLLSLHPEDCLTCEKAGNCQLQDCAYTYGVKHGELPVKREELPVLKE 135

Query: 99  ------DMIKCIYCGLCQEAC 113
                 D  KCI CG C  AC
Sbjct: 136 NPFIVRDYNKCIVCGRCVRAC 156



 Score = 33.9 bits (76), Expect = 7.5,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 4/46 (8%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           C+ C  C  +CP  A+T     +   G  R   +      C YCG+
Sbjct: 192 CVFCGNCVQVCPVGALT----EKAGLGQGREWEFKKVRSICSYCGV 233


>gi|146386149|gb|ABC20599.2| formate dehydrogenase alpha subunit [Moorella thermoacetica ATCC
           39073]
          Length = 900

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 16/102 (15%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP------AQAITIESGPRCHDGT 90
           P ++            +R Y     +CI C  C   C          +  +        T
Sbjct: 124 PVKREELPVLKENPFIVRDY----NKCIVCGRCVRACQEVQVQRVVDLVGKGSAARVGAT 179

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVE------GPNFEF 126
           +      ++   C++CG C + CPV A+ E      G  +EF
Sbjct: 180 KAGAEVSLEEGGCVFCGNCVQVCPVGALTEKAGLGQGREWEF 221



 Score = 35.1 bits (79), Expect = 3.2,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 18/81 (22%), Gaps = 8/81 (9%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI-- 98
                  R            E C+ C+                       +R     +  
Sbjct: 76  TPVIEEMRKGIIEMLLSLHPEDCLTCEKAGNCQLQDCAYTYGVKHGELPVKREELPVLKE 135

Query: 99  ------DMIKCIYCGLCQEAC 113
                 D  KCI CG C  AC
Sbjct: 136 NPFIVRDYNKCIVCGRCVRAC 156



 Score = 33.9 bits (76), Expect = 7.5,   Method: Composition-based stats.
 Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 4/46 (8%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           C+ C  C  +CP  A+T     +   G  R   +      C YCG+
Sbjct: 192 CVFCGNCVQVCPVGALT----EKAGLGQGREWEFKKVRSICSYCGV 233


>gi|323476933|gb|ADX82171.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus HVE10/4]
          Length = 456

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 17/92 (18%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
               L  Y NG  +  AC +CE  CP  AI ++          +    +ID IKC  CGL
Sbjct: 109 KPIYLSEYCNGLYK--ACNVCEFSCPYNAIKVD----------KKTGVNIDYIKCTSCGL 156

Query: 109 CQEACPVDAIVE-----GPNFEFATETRQELY 135
           C  +CPV AI          FE A    ++  
Sbjct: 157 CVASCPVSAIQFPSLSQNSIFELAKVKGEKRI 188



 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 22/68 (32%), Gaps = 7/68 (10%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
            + L        RC  C+ C   CP  A+ +                D D  +CI C LC
Sbjct: 290 PYILFEVSIDNNRCTLCESCVNWCPTSALKLRRDSGVE-------EIDFDPKRCIGCNLC 342

Query: 110 QEACPVDA 117
              CP   
Sbjct: 343 VNVCPESC 350


>gi|310659230|ref|YP_003936951.1| indolepyruvate ferredoxin oxidoreductase [Clostridium sticklandii
           DSM 519]
 gi|308826008|emb|CBH22046.1| Indolepyruvate ferredoxin oxidoreductase [Clostridium sticklandii]
          Length = 600

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 6/64 (9%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            +      CI CK C          +           ++    ID  +C+ C +C + CP
Sbjct: 530 HFYVDPNICIGCKTC---IKTNCPPLRMKKYEGIEKLKSS---IDKNQCVGCSICAQVCP 583

Query: 115 VDAI 118
           V+AI
Sbjct: 584 VNAI 587


>gi|291280537|ref|YP_003497372.1| 4Fe-4S ferredoxin [Deferribacter desulfuricans SSM1]
 gi|290755239|dbj|BAI81616.1| 4Fe-4S ferredoxin [Deferribacter desulfuricans SSM1]
          Length = 56

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 25/64 (39%), Gaps = 11/64 (17%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + C  C  CE  CP  AI+   G R            ID   C  CG C E CP
Sbjct: 1   MAHVITDECTNCGACEDECPVGAISEGDGKRV-----------IDPDTCTDCGACAEVCP 49

Query: 115 VDAI 118
           VDAI
Sbjct: 50  VDAI 53


>gi|282856871|ref|ZP_06266129.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Pyramidobacter piscolens W5455]
 gi|282585289|gb|EFB90599.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Pyramidobacter piscolens W5455]
          Length = 298

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 18/91 (19%)

Query: 28  FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH 87
           F+       P         F    AL RY   E++C+AC  C A+CP             
Sbjct: 207 FRPFCKYLCP---LGAFYGFFNRIALFRYGFDEKKCVACGRCAAVCP------------- 250

Query: 88  DGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                 + +  +  +CI CG C  ACPV+A+
Sbjct: 251 --MTLKLPHGTNGAECIRCGRCVHACPVEAL 279


>gi|269102198|ref|ZP_06154895.1| electron transport complex protein RnfB [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268162096|gb|EEZ40592.1| electron transport complex protein RnfB [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 192

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 25/78 (32%), Gaps = 10/78 (12%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E+ CI C  C   CP  AI   +             + +   +C  C LC   CP D
Sbjct: 107 FIHEDMCIGCTKCIQACPVDAIVGGTK----------AIHTVIKDECTGCKLCVAPCPTD 156

Query: 117 AIVEGPNFEFATETRQEL 134
            I      E     +  L
Sbjct: 157 CIEMITVEETPDTWKWNL 174


>gi|256828953|ref|YP_003157681.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfomicrobium baculatum DSM 4028]
 gi|256578129|gb|ACU89265.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfomicrobium baculatum DSM 4028]
          Length = 519

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 5/73 (6%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV---DAIVE 120
             C  C   CP +A+ +   P   +  R  V  ++    C+ CG C+ ACP     AI  
Sbjct: 433 TNCGACSEHCPTKAVRMVPYPNALN--RPLVIPEVHADYCVGCGACEHACPTKPFKAICV 490

Query: 121 GPNFEFATETRQE 133
             N   AT  + E
Sbjct: 491 DGNPVHATSKKPE 503



 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 13/66 (19%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +RC  C  CE +C A  I +E             R  +D  +C+ C  C  ACP  A+
Sbjct: 229 DHDRCTKCGRCERVCKAGCIDLE-------------RMRVDTGRCVACYNCLAACPAGAM 275

Query: 119 VEGPNF 124
                +
Sbjct: 276 HFENRW 281



 Score = 37.0 bits (84), Expect = 0.79,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY-CGLCQEACPVDAI 118
           C AC LC ++CP++ ++         G     R +     C Y C LC + CP  AI
Sbjct: 348 CTACHLCVSVCPSRVLSPSILEFGPSGIM-QPRLNYRASYCNYECTLCTQVCPTGAI 403


>gi|255524302|ref|ZP_05391260.1| hydrogenase, Fe-only [Clostridium carboxidivorans P7]
 gi|296185259|ref|ZP_06853669.1| ferredoxin hydrogenase [Clostridium carboxidivorans P7]
 gi|255511985|gb|EET88267.1| hydrogenase, Fe-only [Clostridium carboxidivorans P7]
 gi|296050093|gb|EFG89517.1| ferredoxin hydrogenase [Clostridium carboxidivorans P7]
          Length = 580

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 57  PNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEAC 113
               ++CI C+ CE +C   Q   + S       T  +  +   +   +C +CG C   C
Sbjct: 147 YRNLDKCIMCRRCETMCNEVQTCQVYSAVDRGFETVVSPAFGRPMLDTQCTFCGQCVSVC 206

Query: 114 PVDAIVEGPN 123
           P  A+ E  N
Sbjct: 207 PTAALTEVSN 216


>gi|262193410|ref|YP_003264619.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haliangium
           ochraceum DSM 14365]
 gi|262076757|gb|ACY12726.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haliangium
           ochraceum DSM 14365]
          Length = 840

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 11/84 (13%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
            +K    P  +    L    N  +RC+ C  C A+CP   + + S               
Sbjct: 19  HQKPQAQPENQQARILVHAIND-DRCVGCDACVAVCPTNVLDLISNKSRV---------- 67

Query: 98  IDMIKCIYCGLCQEACPVDAIVEG 121
           +    CI C  C  ACP +A+V  
Sbjct: 68  LRFQDCIQCEQCMWACPTEALVMH 91



 Score = 42.0 bits (97), Expect = 0.024,   Method: Composition-based stats.
 Identities = 8/46 (17%), Positives = 18/46 (39%)

Query: 78  ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
              +   +  +   R + + I+  +C+ C  C   CP + +    N
Sbjct: 18  HHQKPQAQPENQQARILVHAINDDRCVGCDACVAVCPTNVLDLISN 63


>gi|121596434|ref|YP_988330.1| 4Fe-4S ferredoxin [Acidovorax sp. JS42]
 gi|120608514|gb|ABM44254.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Acidovorax
           sp. JS42]
          Length = 77

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +RC  C  C  +CP   ++++       G +R+V +D     C  C LC   CP DAI
Sbjct: 12  DPQRCTGCGWCVGVCPPHVLSLQVQGPERFGPKRSVLHD--APGCTGCALCALRCPFDAI 69

Query: 119 VEGPN 123
               N
Sbjct: 70  RMVRN 74


>gi|89889348|ref|ZP_01200859.1| hypothetical transmembrane protein [Flavobacteria bacterium BBFL7]
 gi|89517621|gb|EAS20277.1| hypothetical transmembrane protein [Flavobacteria bacterium BBFL7]
          Length = 545

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 9/53 (16%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           +CI+C  C   C           +           +I    C+ CG+C   CP
Sbjct: 465 QCISCGNCSTYCEMGIDVRSYAQKGE---------NIVRASCVGCGICSAVCP 508


>gi|73668105|ref|YP_304120.1| hypothetical protein Mbar_A0559 [Methanosarcina barkeri str.
           Fusaro]
 gi|72395267|gb|AAZ69540.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 634

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 18/52 (34%), Gaps = 12/52 (23%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           C  C +C   C   AI ++                     CI+CG C E CP
Sbjct: 590 CQGCGVCVGHCEHNAIEMKEKKVR------------IKENCIHCGACIEVCP 629


>gi|51244331|ref|YP_064215.1| Fe-center hydrogenase, large subunit [Desulfotalea psychrophila
           LSv54]
 gi|50875368|emb|CAG35208.1| probable Fe-center hydrogenase, large subunit [Desulfotalea
           psychrophila LSv54]
          Length = 471

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 10/55 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
            +E C  C  C+ +CP  AI+           R    + ID   CI+CG C + C
Sbjct: 21  DQELCTGCGRCKEVCPVGAISG----------RLNRAHQIDTDACIFCGQCVQIC 65



 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 13/21 (61%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   C  CG C+E CPV AI
Sbjct: 20  IDQELCTGCGRCKEVCPVGAI 40


>gi|330997523|ref|ZP_08321371.1| 4Fe-4S binding domain protein [Paraprevotella xylaniphila YIT
           11841]
 gi|329570468|gb|EGG52195.1| 4Fe-4S binding domain protein [Paraprevotella xylaniphila YIT
           11841]
          Length = 387

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 28/82 (34%), Gaps = 8/82 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP--VD 116
            + +C  C  C  ICP + I +          + +         CI CGLC+  CP    
Sbjct: 6   DKAKCCGCNACVQICPQKCIEMNPDSEGFLYPKTSK------ENCIQCGLCERVCPLGEP 59

Query: 117 AIVEGPNFEFATETRQELYYDK 138
                P    A   + E   DK
Sbjct: 60  KSKREPKEILAATNKNEHILDK 81


>gi|323142952|ref|ZP_08077661.1| 2-oxoacid:acceptor oxidoreductase, delta subunit,
           pyruvate/2-ketoisovalerate family [Succinatimonas hippei
           YIT 12066]
 gi|322417269|gb|EFY07894.1| 2-oxoacid:acceptor oxidoreductase, delta subunit,
           pyruvate/2-ketoisovalerate family [Succinatimonas hippei
           YIT 12066]
          Length = 542

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 9/62 (14%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C+ C  C  +CP  A+      +          Y+ +   C  CG+C + CP   I   
Sbjct: 488 NCMECDNCYGVCPDSAVVKLGPGKG---------YEFNYDYCKGCGVCAQECPCGHIKMV 538

Query: 122 PN 123
           P 
Sbjct: 539 PE 540


>gi|310827347|ref|YP_003959704.1| hypothetical protein ELI_1755 [Eubacterium limosum KIST612]
 gi|308739081|gb|ADO36741.1| hypothetical protein ELI_1755 [Eubacterium limosum KIST612]
          Length = 599

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 10/68 (14%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             L  +   EE C  C  C   CPA A++ E     H          ID +KCI CG C+
Sbjct: 534 PKLTAFVIDEEACRGCMRCSKACPAGAVSGEVKKPHH----------IDPVKCIACGSCR 583

Query: 111 EACPVDAI 118
           EAC  DA+
Sbjct: 584 EACNFDAV 591


>gi|302387729|ref|YP_003823551.1| PAS/PAC sensor protein [Clostridium saccharolyticum WM1]
 gi|302198357|gb|ADL05928.1| putative PAS/PAC sensor protein [Clostridium saccharolyticum WM1]
          Length = 577

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 11/66 (16%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            +C  C  C   C  +A+             +  R +I   KC+ CG C + CP  A   
Sbjct: 9   TKCKHCYKCIRNCEVKAV-----------MIKDERAEIMPDKCVLCGKCMQVCPQSAKTL 57

Query: 121 GPNFEF 126
             + + 
Sbjct: 58  ISDLDL 63


>gi|300175642|emb|CBK20953.2| unnamed protein product [Blastocystis hominis]
          Length = 1185

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 17/91 (18%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG   +    N ++ C  C  C +ICP               +A    +         + 
Sbjct: 674 RGMATIVPVWN-KDTCTQCNQCASICPHSVIRPFLMDAEETKKAPASFTYLPAVGDELKG 732

Query: 94  VRYDID--MIKCIYCGLCQEACPVDAIVEGP 122
           + + I    + C  C +C   CP +++   P
Sbjct: 733 LNFTIQASPLDCTGCEVCATVCPTESLKMEP 763


>gi|229828025|ref|ZP_04454094.1| hypothetical protein GCWU000342_00074 [Shuttleworthia satelles DSM
           14600]
 gi|229792619|gb|EEP28733.1| hypothetical protein GCWU000342_00074 [Shuttleworthia satelles DSM
           14600]
          Length = 328

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 23/75 (30%), Gaps = 8/75 (10%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G   +       +RC++C  C   C                +    +   D  KC+ CG+
Sbjct: 161 GIIGMTEPQYDSDRCVSCGQCVDYCQ--------RRSVGALSVVNNKIVRDTAKCVGCGV 212

Query: 109 CQEACPVDAIVEGPN 123
           C   CP  A      
Sbjct: 213 CVHYCPTRAWTRSKE 227


>gi|167746138|ref|ZP_02418265.1| hypothetical protein ANACAC_00834 [Anaerostipes caccae DSM 14662]
 gi|167654653|gb|EDR98782.1| hypothetical protein ANACAC_00834 [Anaerostipes caccae DSM 14662]
          Length = 1174

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 31/103 (30%), Gaps = 20/103 (19%)

Query: 31  KTTINYPFEKGSTSPRF-----RGEHALRRYPNGEERCIACKLCEAICPAQ-----AITI 80
           K +   P+  G           RG        N  + CI C  C  +CP       A+T 
Sbjct: 656 KVSDLVPYADGHMPQGSAAYEKRGVAVDVPTWN-PDNCIQCNFCAYVCPHAVIRPVAMTE 714

Query: 81  ESGPRCHDGTR---------RTVRYDIDMIKCIYCGLCQEACP 114
           E      + T+                 ++ C  CG C   CP
Sbjct: 715 EELAAAPEATKSLPMTGMPDYKFVMTTTVLDCTGCGSCANVCP 757


>gi|158425078|ref|YP_001526370.1| formate dehydrogenase alpha subunit [Azorhizobium caulinodans ORS
           571]
 gi|158331967|dbj|BAF89452.1| formate dehydrogenase alpha subunit [Azorhizobium caulinodans ORS
           571]
          Length = 945

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 3/77 (3%)

Query: 55  RYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDM--IKCIYCGLCQE 111
            +   + +CI C  C   C   Q     +      G+R +   D      +C+ CG C +
Sbjct: 159 YFTYEQSKCIVCNRCVRACEEVQGTFALTISGRGFGSRVSPGMDEPFLSSECVSCGACVQ 218

Query: 112 ACPVDAIVEGPNFEFAT 128
           ACP   + E   +E  T
Sbjct: 219 ACPTATLNEKAMYEIGT 235


>gi|91772867|ref|YP_565559.1| acetyl-CoA decarbonylase/synthase complex subunit alpha
           [Methanococcoides burtonii DSM 6242]
 gi|121686863|sp|Q12XL7|ACDA_METBU RecName: Full=Acetyl-CoA decarbonylase/synthase complex subunit
           alpha; Short=ACDS complex subunit alpha; AltName:
           Full=ACDS complex carbon monoxide dehydrogenase;
           Short=ACDS CODH
 gi|91711882|gb|ABE51809.1| Acetyl-CoA decarbonylase/synthase complex alpha subunit 2
           [Methanococcoides burtonii DSM 6242]
          Length = 802

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C+ C  CE  CP      E+     +G     ++++   KCI CG C+ ACP D I  
Sbjct: 411 DSCVHCLKCEVACPNSLPISEAMTALSEGD--LSKFELLHDKCIACGRCEYACPKD-IDI 467

Query: 121 GPNFEFAT 128
               E ++
Sbjct: 468 VNVIEKSS 475


>gi|15678433|ref|NP_275548.1| polyferredoxin [Methanothermobacter thermautotrophicus str. Delta
           H]
 gi|2621468|gb|AAB84911.1| polyferredoxin [Methanothermobacter thermautotrophicus str. Delta
           H]
          Length = 261

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 29/75 (38%), Gaps = 11/75 (14%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           +RC AC  C   CP  AI ++                +D   CI CG C   CP DA+  
Sbjct: 140 DRCTACGTCTRFCPTGAIQLDKEIAV-----------VDESICIGCGACVNVCPSDAVEL 188

Query: 121 GPNFEFATETRQELY 135
                   ETR+ L 
Sbjct: 189 ERELGPVIETRRLLV 203



 Score = 41.6 bits (96), Expect = 0.037,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 12/82 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C  +CP+ A+ +E        TRR +    D   C+ C +C+E CP  AI
Sbjct: 167 DESICIGCGACVNVCPSDAVELERELGPVIETRRLLV---DQDACVECLVCEENCPTGAI 223

Query: 119 VEGPNFEFATETRQELYYDKER 140
                         E+  DK++
Sbjct: 224 RIED---------GEVVVDKDK 236



 Score = 37.4 bits (85), Expect = 0.71,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 10/68 (14%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            L ++ +   +C+ C LC   CP  AI+  S  +              +  C+ C +C +
Sbjct: 47  VLDKFIDITPKCVRCNLCFEECPVDAISESSASKPAR----------ILDNCVKCEICAQ 96

Query: 112 ACPVDAIV 119
            CPV  I 
Sbjct: 97  TCPVRCIN 104



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 11/85 (12%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +              RR    ++ C+ C +CE  CP  AI IE G            
Sbjct: 181 CPSDAVELERELGPVIETRRLLVDQDACVECLVCEENCPTGAIRIEDGEVV--------- 231

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVE 120
             +D  KCI C +C   CPV A+  
Sbjct: 232 --VDKDKCILCEVCSTRCPVAALKL 254


>gi|57641578|ref|YP_184056.1| indolepyruvate: ferredoxin oxidoreductase, alpha subunit
           [Thermococcus kodakarensis KOD1]
 gi|57159902|dbj|BAD85832.1| indolepyruvate: ferredoxin oxidoreductase, alpha subunit
           [Thermococcus kodakarensis KOD1]
          Length = 637

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 9/60 (15%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ++C  CK C  +    A+  +           T +  ID + C  CG+C + CP DAI  
Sbjct: 579 DKCTGCKACILLTGCPALVYDPE---------TKKVRIDELLCTGCGVCNQTCPFDAIKF 629


>gi|323702954|ref|ZP_08114611.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
            [Desulfotomaculum nigrificans DSM 574]
 gi|323532085|gb|EGB21967.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
            [Desulfotomaculum nigrificans DSM 574]
          Length = 1482

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 31/88 (35%), Gaps = 22/88 (25%)

Query: 59   GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              E C  C +C   C   A  ++          R     +  + C  CG C  ACP  A 
Sbjct: 1413 DTELCKGCGICVEACAYGARVLDE---------RRGVALVREVLCQGCGACVAACPSGA- 1462

Query: 119  VEGPNFEFATETRQELYYDKERLLNNGD 146
                     T+ R    ++K++LL   D
Sbjct: 1463 ---------TQQRG---FEKQQLLAMMD 1478



 Score = 37.4 bits (85), Expect = 0.69,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 22/63 (34%), Gaps = 3/63 (4%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           E I  A+   I   P             ID+ KC  CG C   CPV+       F    +
Sbjct: 81  EIITGAKVTDISGEPGNFKVKVHQKARYIDISKCTGCGDCARVCPVE---LPNEFNGEFD 137

Query: 130 TRQ 132
            R+
Sbjct: 138 QRK 140


>gi|262406391|ref|ZP_06082940.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Bacteroides sp. 2_1_22]
 gi|262355094|gb|EEZ04185.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Bacteroides sp. 2_1_22]
          Length = 401

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 6/55 (10%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
              C  C  C  +C   AI          G R  V    ++  CI CGLCQ+ CP
Sbjct: 7   HNECTGCSACVNVCGKNAIFYCEDK---IGFRYPVV---NLDLCIDCGLCQKVCP 55


>gi|240102324|ref|YP_002958632.1| 2-ketoisovalerate ferredoxin oxidoreductase subunit delta
           [Thermococcus gammatolerans EJ3]
 gi|239909877|gb|ACS32768.1| Ketoisovalerate oxidoreductase subunit vorD (vorD) [Thermococcus
           gammatolerans EJ3]
          Length = 105

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 10/63 (15%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E+C+ C +C   CP  AI I                 ID   C  CG+C   CP +AI  
Sbjct: 51  EKCVKCYICWKFCPEPAIYIREDGYVG----------IDYDYCKGCGICANECPTNAITM 100

Query: 121 GPN 123
              
Sbjct: 101 EKE 103


>gi|222445638|ref|ZP_03608153.1| hypothetical protein METSMIALI_01278 [Methanobrevibacter smithii
           DSM 2375]
 gi|261349811|ref|ZP_05975228.1| heterodisulfide reductase, A subunit [Methanobrevibacter smithii
           DSM 2374]
 gi|222435203|gb|EEE42368.1| hypothetical protein METSMIALI_01278 [Methanobrevibacter smithii
           DSM 2375]
 gi|288860596|gb|EFC92894.1| heterodisulfide reductase, A subunit [Methanobrevibacter smithii
           DSM 2374]
          Length = 662

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +  C AC++C  +CP  AI+I                +I+   C  CG C  ACP  A+
Sbjct: 587 DDVICGACEVCVELCPYGAISITGDDNAAHA-------EINAALCKGCGTCVGACPSGAM 639

Query: 119 VEGP 122
            +  
Sbjct: 640 DQQH 643



 Score = 37.0 bits (84), Expect = 0.81,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 23/82 (28%), Gaps = 7/82 (8%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR-------CHDGTRRTVRYDI 98
            F      +     EE C  C  C   CP +                        +   I
Sbjct: 237 NFHVTVGKKARYVIEEDCTGCGSCVEACPIEIPNYYDEGVGMVKAAYIPFPQAVPLCATI 296

Query: 99  DMIKCIYCGLCQEACPVDAIVE 120
           D   CI C LC +AC   AI  
Sbjct: 297 DKDYCIECMLCDQACERGAIDH 318


>gi|212692834|ref|ZP_03300962.1| hypothetical protein BACDOR_02333 [Bacteroides dorei DSM 17855]
 gi|237724884|ref|ZP_04555365.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. D4]
 gi|265754729|ref|ZP_06089781.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp.
           3_1_33FAA]
 gi|212664623|gb|EEB25195.1| hypothetical protein BACDOR_02333 [Bacteroides dorei DSM 17855]
 gi|229436622|gb|EEO46699.1| pyruvate-formate lyase-activating enzyme [Bacteroides dorei
           5_1_36/D4]
 gi|263234843|gb|EEZ20411.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp.
           3_1_33FAA]
          Length = 302

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 15/80 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ++C+ C  C  +CP  A+T+       D             KC+ CG C E CP  AI  
Sbjct: 51  KKCLGCGTCLKVCPNGALTLTPEGIVTDKQ-----------KCVLCGRCAEECPAMAIEI 99

Query: 121 GPNFEFATETRQELYYDKER 140
                    T + L ++ E+
Sbjct: 100 SG----TEYTAEYLIHEIEK 115



 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 15/39 (38%)

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
              +G R          KC+ CG C + CP  A+   P 
Sbjct: 35  HNPEGIRNGKDKLYTAKKCLGCGTCLKVCPNGALTLTPE 73


>gi|217966695|ref|YP_002352201.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Dictyoglomus turgidum DSM 6724]
 gi|217335794|gb|ACK41587.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Dictyoglomus turgidum DSM 6724]
          Length = 92

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 21/65 (32%), Gaps = 11/65 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              +C  C  C   CP  A+  +                ID   C  CG+C   CPV AI
Sbjct: 37  DYNKCTTCMFCWLFCPDSAVKFDGQKVY-----------IDYDYCKGCGVCAAECPVKAI 85

Query: 119 VEGPN 123
                
Sbjct: 86  TMKEE 90


>gi|159905591|ref|YP_001549253.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C6]
 gi|159887084|gb|ABX02021.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           maripaludis C6]
          Length = 252

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 10/76 (13%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
             +  L ++   EE CI C +CE  CP  AI +E                I++  C+ C 
Sbjct: 119 HRKVRLVKHELDEESCIKCGICERFCPTSAIKVEKRNSIE----------INLDLCMGCT 168

Query: 108 LCQEACPVDAIVEGPN 123
            C++ CP  AI     
Sbjct: 169 ACEKVCPKSAIKVENE 184



 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 32/87 (36%), Gaps = 11/87 (12%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P              A        + CI C +C  ICP  AI  E G            
Sbjct: 174 CPKSAIKVENELGEIPAENVISLNNDTCINCMVCSEICPVGAIVYEDG-----------L 222

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGP 122
             +D  KCI+CG C++ CPV AI   P
Sbjct: 223 MKLDDKKCIFCGKCEKNCPVTAIAIKP 249



 Score = 38.5 bits (88), Expect = 0.30,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 15/74 (20%)

Query: 60  EERCIACKLCEAICPAQAI---------------TIESGPRCHDGTRRTVRYDIDMIKCI 104
            E+C+ C++C   CP  AI                            R V++++D   CI
Sbjct: 76  PEKCVKCEICAKTCPVGAINVLEGRAELKDDDVIYELKEIDVTHRKVRLVKHELDEESCI 135

Query: 105 YCGLCQEACPVDAI 118
            CG+C+  CP  AI
Sbjct: 136 KCGICERFCPTSAI 149



 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C+ C  CE +CP  AI +E+               ++   CI C +C E CPV AI
Sbjct: 164 CMGCTACEKVCPKSAIKVENELGEIPAENVIS---LNNDTCINCMVCSEICPVGAI 216


>gi|91228908|ref|ZP_01262808.1| electron transport complex protein RnfC [Vibrio alginolyticus
           12G01]
 gi|91187539|gb|EAS73871.1| electron transport complex protein RnfC [Vibrio alginolyticus
           12G01]
          Length = 878

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 13/107 (12%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            CI C  C   CPA  +  +               ++++  CI CG C   CP   I   
Sbjct: 377 ECIRCSQCAEACPAS-LLPQQLQWHAKAEEYDKLEELNLKDCIECGACAFVCP-SEIPLV 434

Query: 122 PNF-----EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
             +     E  T T++    ++ +L     R+E +  R +  +   R
Sbjct: 435 QYYRQAKAEIRTRTQEAEAAERAKL-----RFEEKKAR-MEREKAER 475


>gi|52549490|gb|AAU83339.1| coenzyme F420-reducing hydrogenase beta subunit [uncultured
           archaeon GZfos27E7]
          Length = 267

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 11/63 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            EE+   C  C  +C   AI+I  G              ID  KCI CG C   CP +A+
Sbjct: 116 DEEKFNGCGRCAELCRVDAISIVLGKSV-----------IDSDKCISCGWCIRGCPHEAV 164

Query: 119 VEG 121
           +E 
Sbjct: 165 IET 167


>gi|15605931|ref|NP_213308.1| NADH dehydrogenase I chain G [Aquifex aeolicus VF5]
 gi|2983106|gb|AAC06711.1| NADH dehydrogenase I chain G [Aquifex aeolicus VF5]
          Length = 632

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 22/64 (34%), Gaps = 2/64 (3%)

Query: 61  ERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            RC+ C  C   C        +    R            +D   C  CG+C   CPV AI
Sbjct: 152 NRCVVCYRCTRACDEVVGTRALYVEDRGFHSNIVPAVRPMDTSTCEMCGICVHVCPVGAI 211

Query: 119 VEGP 122
           +  P
Sbjct: 212 ISKP 215


>gi|14590966|ref|NP_143041.1| indolepyruvate ferredoxin oxidoreductase alpha subunit [Pyrococcus
           horikoshii OT3]
 gi|3257555|dbj|BAA30238.1| 618aa long hypothetical indolepyruvate ferredoxin oxidoreductase
           alpha subunit [Pyrococcus horikoshii OT3]
          Length = 618

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 9/79 (11%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
           P  R           E++C  CK C  +    A+  +   R         +  ID + C 
Sbjct: 547 PVIRRGETREPPIVIEDKCTGCKACILLSGCPALIYDPETR---------KVRIDELICT 597

Query: 105 YCGLCQEACPVDAIVEGPN 123
            CG+C + CP DAI     
Sbjct: 598 GCGICNQLCPFDAIKFREE 616


>gi|325121371|gb|ADY80894.1| putative iron-sulfur protein [Acinetobacter calcoaceticus PHEA-2]
          Length = 263

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 28/85 (32%), Gaps = 10/85 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E      +  G     +    E+ CI C  C + CP  AI               + + I
Sbjct: 68  ETSVWPVQADGRPQRMKAIIREDECIGCTKCISACPVDAIIGSGK----------LMHTI 117

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPN 123
               C  C LC   CPVD I    +
Sbjct: 118 LTDLCTGCELCIPPCPVDCIDLVED 142


>gi|317473313|ref|ZP_07932608.1| ferredoxin oxidoreductase [Anaerostipes sp. 3_2_56FAA]
 gi|316899149|gb|EFV21168.1| ferredoxin oxidoreductase [Anaerostipes sp. 3_2_56FAA]
          Length = 1174

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 31/103 (30%), Gaps = 20/103 (19%)

Query: 31  KTTINYPFEKGSTSPRF-----RGEHALRRYPNGEERCIACKLCEAICPAQ-----AITI 80
           K +   P+  G           RG        N  + CI C  C  +CP       A+T 
Sbjct: 656 KVSDLVPYADGHMPQGSAAYEKRGVAVDVPTWN-PDNCIQCNFCAYVCPHAVIRPVAMTE 714

Query: 81  ESGPRCHDGTR---------RTVRYDIDMIKCIYCGLCQEACP 114
           E      + T+                 ++ C  CG C   CP
Sbjct: 715 EELAAAPEATKSLPMTGMPDYKFVMTTTVLDCTGCGSCANVCP 757


>gi|293608863|ref|ZP_06691166.1| electron transport complex [Acinetobacter sp. SH024]
 gi|292829436|gb|EFF87798.1| electron transport complex [Acinetobacter sp. SH024]
          Length = 263

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 28/85 (32%), Gaps = 10/85 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E      +  G     +    E+ CI C  C + CP  AI               + + I
Sbjct: 68  ETSVWPVQVDGRPQRMKAIIREDECIGCTKCISACPVDAIIGSGK----------LMHTI 117

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPN 123
               C  C LC   CPVD I    +
Sbjct: 118 LTDLCTGCELCIPPCPVDCIDLVED 142


>gi|291612995|ref|YP_003523152.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Sideroxydans lithotrophicus ES-1]
 gi|291583107|gb|ADE10765.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Sideroxydans lithotrophicus ES-1]
          Length = 431

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 22/66 (33%), Gaps = 10/66 (15%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                   C+    C   CP  AI +  G              I+   CI  G+C  ACP
Sbjct: 50  HPEINPNLCMGAGSCITACPEGAIGMIKGKAVL----------INPTHCIGHGVCAPACP 99

Query: 115 VDAIVE 120
            +AI  
Sbjct: 100 HNAIKL 105


>gi|315230768|ref|YP_004071204.1| MinD-like P-loop ATPase [Thermococcus barophilus MP]
 gi|315183796|gb|ADT83981.1| MinD-like P-loop ATPase [Thermococcus barophilus MP]
          Length = 286

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 36/115 (31%), Gaps = 20/115 (17%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRG-------EHALRRYPNGEERCIACKL 68
                 + LR +F    T+     +        G          L        +CI C+ 
Sbjct: 17  IAINLAIALRNYFD--LTLADLDVEAPNDHILLGIELQNEEPVELFMPRFDYSKCIKCRR 74

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-AIVEGP 122
           C  +C   AI             R     +    C  CG C+  CPV+ AI+EG 
Sbjct: 75  CAEVCEEHAIIT----------MRDGTPFLMPTLCSGCGACRIVCPVEGAILEGK 119



 Score = 33.9 bits (76), Expect = 8.2,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 12/30 (40%)

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                D  KCI C  C E C   AI+   +
Sbjct: 60  FMPRFDYSKCIKCRRCAEVCEEHAIITMRD 89


>gi|164686402|ref|ZP_02210432.1| hypothetical protein CLOBAR_02840 [Clostridium bartlettii DSM
           16795]
 gi|164602004|gb|EDQ95469.1| hypothetical protein CLOBAR_02840 [Clostridium bartlettii DSM
           16795]
          Length = 1177

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 42/123 (34%), Gaps = 33/123 (26%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITI------------------ESGPRCHDGTRR 92
            A+       E CI C  C  +CP   I                    ++  +   G + 
Sbjct: 677 IAVNVPEWKPENCIQCNRCSFVCPHACIRPVLVTEEELAAAPEAFVAVDAKGKEVKGLKY 736

Query: 93  TVRYDIDMIKCIYCGLCQEACP--VDAIVEGP---------NFEFATETRQELYYDKERL 141
             R  +  + C  CG C + CP    A+V  P         N+ FA +T++     K  L
Sbjct: 737 --RMQVSTMDCTGCGNCADVCPAKEKALVMEPLDTQEKEVENWAFAVDTKK--VAPKGDL 792

Query: 142 LNN 144
           +N 
Sbjct: 793 MNV 795


>gi|218782352|ref|YP_002433670.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218763736|gb|ACL06202.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 287

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 12/59 (20%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            CIAC  C  +CP  AI +        G            +CI CGLC   CP DA+  
Sbjct: 220 DCIACGKCVEVCPMHAIVLGEEKAEIQG------------RCIGCGLCASNCPTDAMEL 266



 Score = 37.0 bits (84), Expect = 0.95,   Method: Composition-based stats.
 Identities = 12/23 (52%), Positives = 13/23 (56%)

Query: 101 IKCIYCGLCQEACPVDAIVEGPN 123
             CI CG C E CP+ AIV G  
Sbjct: 219 GDCIACGKCVEVCPMHAIVLGEE 241


>gi|114766788|ref|ZP_01445722.1| dihydropyrimidine dehydrogenase [Pelagibaca bermudensis HTCC2601]
 gi|114540982|gb|EAU44040.1| dihydropyrimidine dehydrogenase [Roseovarius sp. HTCC2601]
          Length = 434

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 8/63 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117
            +E CI+C  C A C       E              + +   +C+ C LC   CPV D 
Sbjct: 342 DQELCISCGRCYAAC-------EDTSHQAIDMSEDRVFTVKDDECVACNLCVNVCPVEDC 394

Query: 118 IVE 120
           I  
Sbjct: 395 ITM 397


>gi|332285354|ref|YP_004417265.1| NAD-dependent formate dehydrogenase alpha subunit [Pusillimonas sp.
           T7-7]
 gi|330429307|gb|AEC20641.1| NAD-dependent formate dehydrogenase alpha subunit [Pusillimonas sp.
           T7-7]
          Length = 981

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 23/75 (30%), Gaps = 3/75 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     +G                   C+ CG C +
Sbjct: 162 YFSYDPSKCIVCSRCVRACDEVQGTFALTITGRGFDSRVTAGQHDSFLDSDCVSCGACVQ 221

Query: 112 ACPVDAIVEGPNFEF 126
           ACP   ++E    E 
Sbjct: 222 ACPTSTLMEKSVIEM 236


>gi|317048250|ref|YP_004115898.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Pantoea sp. At-9b]
 gi|316949867|gb|ADU69342.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Pantoea sp. At-9b]
          Length = 1175

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/125 (17%), Positives = 32/125 (25%), Gaps = 18/125 (14%)

Query: 29  KAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES---- 82
           K   +   P     T  +   +   A        + C  C  C A CP  AI  +     
Sbjct: 653 KLPVSALPPDGSWPTGTTQWEKRNIAEAIPIWQPDLCTQCNHCVAACPHSAIRAKVVTPE 712

Query: 83  ------------GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
                         +  D   +     +    C  C LC E CP              ++
Sbjct: 713 ALEGAPISLASLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPASDRQHPEIKAINMQS 772

Query: 131 RQELY 135
           R E  
Sbjct: 773 RLEHV 777


>gi|310659596|ref|YP_003937317.1| NADH dehydrogenase (quinone) [Clostridium sticklandii DSM 519]
 gi|308826374|emb|CBH22412.1| NADH dehydrogenase (Quinone) [Clostridium sticklandii]
          Length = 576

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 10/67 (14%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           AL +Y    E+C+ C +C   CP   I+ E                I+   CI CG C +
Sbjct: 517 ALIKYVIDPEKCVGCTVCAKACPVSCISGERKEPHL----------INQDACIKCGQCYQ 566

Query: 112 ACPVDAI 118
            C  DAI
Sbjct: 567 KCKFDAI 573



 Score = 38.9 bits (89), Expect = 0.25,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 20/49 (40%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           +         I +           ++Y ID  KC+ C +C +ACPV  I
Sbjct: 495 KYFRNEYEDHIYNKTCTAKQCSALIKYVIDPEKCVGCTVCAKACPVSCI 543


>gi|302339324|ref|YP_003804530.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Spirochaeta smaragdinae DSM 11293]
 gi|301636509|gb|ADK81936.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Spirochaeta smaragdinae DSM 11293]
          Length = 552

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/94 (22%), Positives = 28/94 (29%), Gaps = 19/94 (20%)

Query: 33  TINYPF------EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC 86
           T + P       +        +         +     I C  C + CP  AIT+      
Sbjct: 392 TESCPDSFLIGDDHPPVGKGKKPVAVFYCDQD-----IPCNPCISACPVGAITMTPS--- 443

Query: 87  HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
                 T    +D   C  CG C   CP  AIV 
Sbjct: 444 -----LTGIPRLDSDLCTGCGRCLSVCPGQAIVL 472



 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 29/89 (32%), Gaps = 16/89 (17%)

Query: 48  RGEHALRRYPNGEERCIACKLCE--------------AICPAQAITIESGPRCHDGTRRT 93
           R     R   +G  + I+C  CE                CP   +  +  P    G +  
Sbjct: 356 RRMGKERIMRSGHGQEISCSDCEASGTVTDNTDTVPTESCPDSFLIGDDHPPVGKGKKPV 415

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
             +  D    I C  C  ACPV AI   P
Sbjct: 416 AVFYCDQD--IPCNPCISACPVGAITMTP 442


>gi|296163947|ref|ZP_06846582.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295900702|gb|EFG80073.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 95

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 5/68 (7%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           R +   ++ CI C  CE  CP +   I        G     R+ ID+ +CI CG C   C
Sbjct: 6   RGHFYIDDTCIGCGACEHSCPGRVDAISKKADDFLG-----RFVIDLDECIDCGKCVPLC 60

Query: 114 PVDAIVEG 121
           PVD I +G
Sbjct: 61  PVDCIHDG 68


>gi|289192298|ref|YP_003458239.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
 gi|288938748|gb|ADC69503.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
          Length = 657

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 28/80 (35%), Gaps = 7/80 (8%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAIT-------IESGPRCHDGTRRTVRYDI 98
            F      +     E  C  C  C A+CP +                        + Y I
Sbjct: 228 NFEVTIEKKPRYVDENICTGCGACAAVCPIEVPNEFDLGLGTRKAIYVPFAQAVPLVYTI 287

Query: 99  DMIKCIYCGLCQEACPVDAI 118
           DM  CI CGLC++AC   AI
Sbjct: 288 DMDHCIRCGLCEKACGPGAI 307



 Score = 42.0 bits (97), Expect = 0.029,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 7/70 (10%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             + R    E+ C  C++C  +CP  AIT              +   ++ + C  CG C 
Sbjct: 571 IEMIRAVVDEDVCGGCQVCAKMCPYNAITYVEKD-------GHLVAQVNDVACKGCGACA 623

Query: 111 EACPVDAIVE 120
            ACP  A+  
Sbjct: 624 GACPSGAMQL 633


>gi|269119251|ref|YP_003307428.1| NADH dehydrogenase (quinone) [Sebaldella termitidis ATCC 33386]
 gi|268613129|gb|ACZ07497.1| NADH dehydrogenase (quinone) [Sebaldella termitidis ATCC 33386]
          Length = 614

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 10/59 (16%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++CI C  C  +CP   I            +   ++ I+  KCI CG C + C   AI
Sbjct: 563 NDKCIGCTACARVCPVSCIEG----------KVKEKHVIEQDKCIKCGACYDKCKFSAI 611


>gi|225010094|ref|ZP_03700566.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Flavobacteria
           bacterium MS024-3C]
 gi|225005573|gb|EEG43523.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Flavobacteria
           bacterium MS024-3C]
          Length = 538

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 12/78 (15%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R +   R   NG  +CI+C  C   C           +           +I    C+ CG
Sbjct: 447 RFKSRFRITTNG-GQCISCGNCSTYCEMGIDVRAYAQKGE---------NIVRSSCVGCG 496

Query: 108 LCQEACP--VDAIVEGPN 123
           +C   CP  V  + +GP 
Sbjct: 497 VCSAVCPRGVLKLEQGPE 514


>gi|160939954|ref|ZP_02087300.1| hypothetical protein CLOBOL_04844 [Clostridium bolteae ATCC
           BAA-613]
 gi|158437098|gb|EDP14864.1| hypothetical protein CLOBOL_04844 [Clostridium bolteae ATCC
           BAA-613]
          Length = 427

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 6/65 (9%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ++C+ C  C   CP  AI++E G           R  +D   C+ CG+C   C V AI  
Sbjct: 293 DQCVGCGKCAKTCPVLAISMEEGENG------RKRAVVDKDICLGCGVCDRNCGVKAIHM 346

Query: 121 GPNFE 125
               E
Sbjct: 347 ERRTE 351



 Score = 40.9 bits (94), Expect = 0.062,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 4/43 (9%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139
           DI   +C+ CG C + CPV AI      E     R+    DK+
Sbjct: 289 DITGDQCVGCGKCAKTCPVLAISM----EEGENGRKRAVVDKD 327


>gi|150401064|ref|YP_001324830.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus aeolicus Nankai-3]
 gi|150013767|gb|ABR56218.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           aeolicus Nankai-3]
          Length = 354

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 1/72 (1%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G    R     ++ C+ C +C+ ICP +AI++ +    + G    ++ DI    C+ CG+
Sbjct: 21  GAKEKRVLNWNDKSCVGCGICKDICPTEAISMGALGAVYKGVVSDLKLDISTD-CVLCGM 79

Query: 109 CQEACPVDAIVE 120
           C  ACP +A+  
Sbjct: 80  CASACPFNAMEL 91



 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++ C+ C+ CE +CP  AI +E     +  T       I+  KC YC +C E CP D+I
Sbjct: 114 NQDACVLCEQCELVCPQDAIHVE-RELPNRETLVLGEITINKDKCKYCSICAEYCPADSI 172

Query: 119 VEGPNFEFAT 128
              PN +  +
Sbjct: 173 TLIPNDDPTS 182



 Score = 41.2 bits (95), Expect = 0.044,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R    L      +++C  C +C   CPA +IT+          +      +D   C+YC 
Sbjct: 142 RETLVLGEITINKDKCKYCSICAEYCPADSITLIPNDD-PTSIKPFSDIVVDTETCVYCK 200

Query: 108 LCQEACPVDAI 118
           +C++ACP DAI
Sbjct: 201 VCEKACPHDAI 211



 Score = 41.2 bits (95), Expect = 0.051,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 8/83 (9%)

Query: 58  NGEERCIACKLCEAICPAQAITIE----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           +    C+ C +C + CP  A+ +E    S        +      ++   C+ C  C+  C
Sbjct: 69  DISTDCVLCGMCASACPFNAMELEINGTSTKEYPQYPKIKRSITLNQDACVLCEQCELVC 128

Query: 114 PVDAIVEGPNFEFATETRQELYY 136
           P DAI            R+ L  
Sbjct: 129 PQDAIHVEREL----PNRETLVL 147



 Score = 40.9 bits (94), Expect = 0.057,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 8/64 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E++C++C  CE +CPA A+ +E                ID  KC  CG C   CP   +
Sbjct: 240 DEDKCVSCSKCEIVCPADALVVEKPFEGELC--------IDAEKCNACGACVAVCPCQVL 291

Query: 119 VEGP 122
              P
Sbjct: 292 YFPP 295



 Score = 40.9 bits (94), Expect = 0.062,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 8/75 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD--------IDMIKCIYCGLCQ 110
             E C+ CK+CE  CP  AI +           +T            ID  KC+ C  C+
Sbjct: 192 DTETCVYCKVCEKACPHDAIEVICYKCPLAVRIKTPEIYKEIKGQTIIDEDKCVSCSKCE 251

Query: 111 EACPVDAIVEGPNFE 125
             CP DA+V    FE
Sbjct: 252 IVCPADALVVEKPFE 266



 Score = 39.3 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 3/62 (4%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               E+C AC  C A+CP Q +     P   D  +R     +    CI CG C +ACP+D
Sbjct: 270 CIDAEKCNACGACVAVCPCQVLYF---PPHTDVGQRPEPVAVVQEACILCGACVQACPID 326

Query: 117 AI 118
            I
Sbjct: 327 VI 328



 Score = 34.3 bits (77), Expect = 5.5,   Method: Composition-based stats.
 Identities = 9/19 (47%), Positives = 14/19 (73%)

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C+ CG+C++ CP +AI  G
Sbjct: 35  CVGCGICKDICPTEAISMG 53


>gi|119510366|ref|ZP_01629501.1| NAD-reducing hydrogenase subunit U [Nodularia spumigena CCY9414]
 gi|119465003|gb|EAW45905.1| NAD-reducing hydrogenase subunit U [Nodularia spumigena CCY9414]
          Length = 238

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 29/89 (32%), Gaps = 12/89 (13%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRR 92
           ++P  K   S    G            RCI C  C  +C     A T +   R  +    
Sbjct: 128 HFPDRKVDVSHDRFGV--------DHNRCILCTRCIRVCDEIEGAHTWDMAGRGTNSHVI 179

Query: 93  TVRYDID--MIKCIYCGLCQEACPVDAIV 119
           T           C  CG C +ACP  A+ 
Sbjct: 180 TDFNQPWGTSDTCTSCGKCVDACPTGALF 208


>gi|315425441|dbj|BAJ47105.1| pyruvate ferredoxin oxidoreductase, gamma subunit [Candidatus
           Caldiarchaeum subterraneum]
          Length = 294

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 10/78 (12%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G   + R      +C  CK+C   CP  AI++++  +            ID   C  C +
Sbjct: 225 GNWRVFRPVVDYGKCTGCKVCFVYCPDSAISLDAENKPV----------IDYEHCKGCLI 274

Query: 109 CQEACPVDAIVEGPNFEF 126
           C   CP+ AI      E 
Sbjct: 275 CVVECPIRAISSVREVEI 292



 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 18/50 (36%)

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            +  +      +  R   G  R  R  +D  KC  C +C   CP  AI  
Sbjct: 207 RVVFSDVFAAGNAVRRSTGNWRVFRPVVDYGKCTGCKVCFVYCPDSAISL 256


>gi|257439682|ref|ZP_05615437.1| putative ferredoxin [Faecalibacterium prausnitzii A2-165]
 gi|257197898|gb|EEU96182.1| putative ferredoxin [Faecalibacterium prausnitzii A2-165]
          Length = 256

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 39/116 (33%), Gaps = 18/116 (15%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
            F   +  +   F  G  +P F               CI C  C  +CP   I +E+G  
Sbjct: 152 EFPPPRDNLYDRFMSGPVNPVFYRFFVKAEAFRATSACIGCGKCVELCPLNNIRLENGKP 211

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERL 141
                       +    C +C  C   CP +AI      E+  ++R +  Y  E L
Sbjct: 212 ------------LWGKNCTHCMACICYCPKEAI------EYGKKSRGKPRYHFEAL 249


>gi|256830046|ref|YP_003158774.1| Cobyrinic acid ac-diamide synthase [Desulfomicrobium baculatum DSM
           4028]
 gi|256579222|gb|ACU90358.1| Cobyrinic acid ac-diamide synthase [Desulfomicrobium baculatum DSM
           4028]
          Length = 290

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 11/62 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E+C  C LC ++C   AI  + G            + +  ++C  C +C   CP  AI
Sbjct: 64  DPEKCTGCGLCASMCRYDAIDEKDG-----------VFSVAPLRCEGCKVCVAFCPEQAI 112

Query: 119 VE 120
             
Sbjct: 113 DF 114



 Score = 34.3 bits (77), Expect = 5.2,   Method: Composition-based stats.
 Identities = 13/25 (52%), Positives = 13/25 (52%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           ID  KC  CGLC   C  DAI E  
Sbjct: 63  IDPEKCTGCGLCASMCRYDAIDEKD 87


>gi|195565891|ref|XP_002106529.1| GD16077 [Drosophila simulans]
 gi|194203907|gb|EDX17483.1| GD16077 [Drosophila simulans]
          Length = 1031

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 18/65 (27%), Gaps = 8/65 (12%)

Query: 59   GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP-VDA 117
             ++ CI C  C   C                  +          C  C LC   CP +D 
Sbjct: 949  DDDMCINCGKCYMTCA-------DSGYQAIEFDKDTHIPHVNDDCTGCTLCVSVCPIIDC 1001

Query: 118  IVEGP 122
            I   P
Sbjct: 1002 ITMVP 1006


>gi|188577211|ref|YP_001914140.1| ferredoxin [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188521663|gb|ACD59608.1| ferredoxin II [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 142

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 31/85 (36%), Gaps = 11/85 (12%)

Query: 39  EKGSTSPRFRGEHAL-RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
                  R RG H L +     E  CI C  C   CP  AI          G  + +   
Sbjct: 66  VPARPYDRSRGAHKLPQVAWIVEADCIGCTKCIHACPVDAIV---------GGAKHMHTV 116

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           I  + C  C LC  ACPVD I   P
Sbjct: 117 IAPL-CTGCELCLPACPVDCIELHP 140


>gi|168238265|ref|ZP_02663323.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194738104|ref|YP_002115589.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|194713606|gb|ACF92827.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197288840|gb|EDY28213.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
          Length = 287

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 22/73 (30%), Gaps = 11/73 (15%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            + C  C  C   CP   I  +                I   +C  CG C   CP  A+ 
Sbjct: 190 PQECRMCGACWRSCPENVIQFDDN-----------TLTIAAARCTGCGGCAAVCPHQALR 238

Query: 120 EGPNFEFATETRQ 132
              + E A+    
Sbjct: 239 LRFDVEPASTRHS 251



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 11/50 (22%)

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  +CPAQA ++  G              ID  +CI CG C   CPVDAI
Sbjct: 29  CADVCPAQAFSLAQGQVS-----------IDTTRCIACGDCLFVCPVDAI 67


>gi|153953472|ref|YP_001394237.1| NADH dehydrogenase-related protein [Clostridium kluyveri DSM 555]
 gi|219854094|ref|YP_002471216.1| hypothetical protein CKR_0751 [Clostridium kluyveri NBRC 12016]
 gi|146346353|gb|EDK32889.1| NADH dehydrogenase-related protein [Clostridium kluyveri DSM 555]
 gi|219567818|dbj|BAH05802.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 320

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 10/68 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L  +   +++C+ C LC+  C +  IT E                ID  KCI CG C + 
Sbjct: 262 LTTFYIDKDKCMGCNLCKKNCDSNCITGEFKKPHE----------IDESKCIRCGNCIDI 311

Query: 113 CPVDAIVE 120
           C  DAI  
Sbjct: 312 CRFDAIKI 319


>gi|126179569|ref|YP_001047534.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit
           [Methanoculleus marisnigri JR1]
 gi|125862363|gb|ABN57552.1| formate dehydrogenase, beta subunit (F420) [Methanoculleus
           marisnigri JR1]
          Length = 421

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 25/76 (32%), Gaps = 9/76 (11%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITI---------ESGPRCHDGTRRTVRYDID 99
           G   L +      RCI C  C   CP               E G          +R+   
Sbjct: 289 GTERLNKIREQTSRCIKCYSCIENCPICYCVECSTRKDYLVEPGVIPPPFMFHLIRFAHI 348

Query: 100 MIKCIYCGLCQEACPV 115
              C+ CG C+E CPV
Sbjct: 349 SDSCVNCGQCEELCPV 364


>gi|52549383|gb|AAU83232.1| coenzyme F420-reducing hydrogenase beta subunit [uncultured
           archaeon GZfos27A8]
          Length = 642

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 11/69 (15%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G     R     E+C  C  C  +C   AI+I  G              ID  KC+ CG 
Sbjct: 507 GLIGQVRPEIDNEKCNGCGRCAELCRVDAISIVLGKAV-----------IDKDKCVTCGW 555

Query: 109 CQEACPVDA 117
           C   CP +A
Sbjct: 556 CIRGCPSEA 564



 Score = 38.9 bits (89), Expect = 0.21,   Method: Composition-based stats.
 Identities = 18/42 (42%), Positives = 19/42 (45%)

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           A       R   G    VR +ID  KC  CG C E C VDAI
Sbjct: 495 ANDCVRAKRNDVGLIGQVRPEIDNEKCNGCGRCAELCRVDAI 536


>gi|14590561|ref|NP_142629.1| 2-ketoisovalerate ferredoxin oxidoreductase subunit delta
           [Pyrococcus horikoshii OT3]
 gi|6686092|sp|O58412|VORD_PYRHO RecName: Full=Ketoisovalerate oxidoreductase subunit vorD;
           Short=VOR; AltName: Full=2-oxoisovalerate ferredoxin
           reductase subunit delta; AltName: Full=2-oxoisovalerate
           oxidoreductase delta chain
 gi|3257087|dbj|BAA29770.1| 105aa long hypothetical ferredoxin oxidoreductase delta subunit
           [Pyrococcus horikoshii OT3]
          Length = 105

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 29/101 (28%), Gaps = 17/101 (16%)

Query: 30  AKTTINYPFEKGSTSP-------RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
              T     E              F G+         E +C+ C +C   CP  AI I+ 
Sbjct: 13  KPITPKSVDEYPEAPVSLGITLVNFTGDWRTFMPVIDESKCVKCYICWKYCPEPAIYIKE 72

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                          ID   C  CG+C   CP  AI     
Sbjct: 73  DG----------FVAIDYDYCKGCGICANECPTKAITMVRE 103


>gi|332981955|ref|YP_004463396.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Mahella
           australiensis 50-1 BON]
 gi|332699633|gb|AEE96574.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Mahella
           australiensis 50-1 BON]
          Length = 573

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 22/73 (30%), Gaps = 13/73 (17%)

Query: 59  GEERCIACKLCEAICP--------AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
              +C+ C  C  +C           A             +      +    CI CG C 
Sbjct: 144 NPNKCVKCGRCVDMCQETQQVGILFDAYRGVDSEIVSGLGKY-----LSDAGCILCGQCS 198

Query: 111 EACPVDAIVEGPN 123
            ACPV AI E   
Sbjct: 199 TACPVAAIYENDE 211


>gi|332702532|ref|ZP_08422620.1| FAD dependent oxidoreductase [Desulfovibrio africanus str. Walvis
           Bay]
 gi|332552681|gb|EGJ49725.1| FAD dependent oxidoreductase [Desulfovibrio africanus str. Walvis
           Bay]
          Length = 937

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 28/78 (35%), Gaps = 12/78 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIE-------SGPRCHDGTRRTVRYDIDMIKCIY---- 105
               ++CIAC LC   CP +                   G    ++Y ID   CIY    
Sbjct: 24  YVEMDKCIACGLCAEKCPKKVSNEYNAGLDTRKAAYIEYGQAVPLKYVIDAENCIYLKSG 83

Query: 106 -CGLCQEACPVDAIVEGP 122
            C  C++ CP  AI    
Sbjct: 84  KCRACEKFCPTGAINFED 101



 Score = 42.4 bits (98), Expect = 0.019,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           + C  C LC  +CP  AI++E   +     RR          C  CGLC+  CP   + 
Sbjct: 862 DNCDGCALCVDVCPYLAISLEDYQKDGYTYRRIKTEQ---ALCKGCGLCEATCPKQGVY 917



 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
           R     ++M KCI CGLC E CP         +    +TR+  Y +
Sbjct: 19  RQKPRYVEMDKCIACGLCAEKCPKKV---SNEYNAGLDTRKAAYIE 61



 Score = 35.1 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 8/25 (32%), Positives = 9/25 (36%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
                C  C LC + CP  AI    
Sbjct: 859 YRTDNCDGCALCVDVCPYLAISLED 883


>gi|331268523|ref|YP_004395015.1| glycerol dehydratase activator [Clostridium botulinum BKT015925]
 gi|329125073|gb|AEB75018.1| glycerol dehydratase activator [Clostridium botulinum BKT015925]
          Length = 313

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 12/61 (19%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
             +  C+ C +C ++C   AI + S  +            I+  KCI CG C E CP +A
Sbjct: 63  YNKNLCVQCGVCNSVCSNYAINLNSENK------------IERDKCIGCGKCAEICPSEA 110

Query: 118 I 118
           +
Sbjct: 111 L 111


>gi|323474016|gb|ADX84622.1| 4Fe-4S ferredoxin, iron-sulfur binding domain [Sulfolobus
           islandicus REY15A]
          Length = 455

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 17/92 (18%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
               L  Y NG  +  AC +CE  CP  AI ++          +    +ID IKC  CGL
Sbjct: 109 KPIYLSEYCNGLYK--ACNVCEFSCPYNAIKVD----------KKTGVNIDYIKCTSCGL 156

Query: 109 CQEACPVDAIVE-----GPNFEFATETRQELY 135
           C  +CPV AI          FE A    ++  
Sbjct: 157 CVASCPVSAIQFPSLSQNSIFELAKVKGEKRI 188



 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 22/68 (32%), Gaps = 7/68 (10%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
            + L        RC  C+ C   CP  A+ +                D D  +CI C LC
Sbjct: 290 PYILFEVSIDNNRCTLCESCVNWCPTSALKLRRDSGVE-------EIDFDPKRCIGCNLC 342

Query: 110 QEACPVDA 117
              CP   
Sbjct: 343 VNVCPESC 350


>gi|323142351|ref|ZP_08077183.1| putative ferredoxin hydrogenase HydA1 [Phascolarctobacterium sp.
           YIT 12067]
 gi|322413235|gb|EFY04122.1| putative ferredoxin hydrogenase HydA1 [Phascolarctobacterium sp.
           YIT 12067]
          Length = 574

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 31/92 (33%), Gaps = 6/92 (6%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
           + P+E+      +  E  L R     ++CI C  C  IC           +         
Sbjct: 120 DIPYERDVVDTPWNQEFPLIRDS---KKCIKCMRCVQICDKVQKLHIWDVQNTGARTTVD 176

Query: 95  R---YDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                 I+   C  CG C   CPV A+ E  +
Sbjct: 177 VAGNVSIEDSDCSLCGQCITHCPVGALKERND 208


>gi|312876635|ref|ZP_07736616.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796588|gb|EFR12936.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Caldicellulosiruptor lactoaceticus 6A]
          Length = 373

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 10/57 (17%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
            +C+ C +C   C   AIT+    +            ID  KC+ CG C   C  +A
Sbjct: 194 SKCVGCGMCVKSCAQLAITLNEKKKAV----------IDYEKCVGCGQCVAVCQFEA 240



 Score = 33.9 bits (76), Expect = 7.3,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 4/60 (6%)

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVR----YDIDMIKCIYCGLCQEACPVDAIVE 120
             K  E      AI          G +  +       I + KC+ CG+C ++C   AI  
Sbjct: 154 HFKGHEMTGFGGAIKNIGMGSGSRGGKLFMHSSSKPVIKVSKCVGCGMCVKSCAQLAITL 213


>gi|288926953|ref|ZP_06420850.1| electron transport complex, RnfABCDGE type, B subunit [Prevotella
           buccae D17]
 gi|288336273|gb|EFC74657.1| electron transport complex, RnfABCDGE type, B subunit [Prevotella
           buccae D17]
          Length = 306

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 25/82 (30%), Gaps = 11/82 (13%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P  +         +         E  CI C  CE  C   AITI                
Sbjct: 198 PKGRRVYVQCVNKDKGAVAKKACEVACIGCGKCEKECKFDAITITDNLSY---------- 247

Query: 97  DIDMIKCIYCGLCQEACPVDAI 118
            ID  KC  C  C + CP  AI
Sbjct: 248 -IDFNKCRLCTKCVDVCPTGAI 268



 Score = 41.2 bits (95), Expect = 0.046,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 12/83 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI----------DMIKCIYCGL 108
            E++C AC  C   CP     IE   +   G R  V+               + CI CG 
Sbjct: 172 DEDKCTACGACVKACPR--HIIELRKKGPKGRRVYVQCVNKDKGAVAKKACEVACIGCGK 229

Query: 109 CQEACPVDAIVEGPNFEFATETR 131
           C++ C  DAI    N  +    +
Sbjct: 230 CEKECKFDAITITDNLSYIDFNK 252


>gi|283851312|ref|ZP_06368594.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfovibrio
           sp. FW1012B]
 gi|283573262|gb|EFC21240.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfovibrio
           sp. FW1012B]
          Length = 765

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 21/70 (30%), Gaps = 10/70 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L        RC  CK C   CP  A+  +                 +  +C  CG C  A
Sbjct: 548 LSYPVFNFVRCTQCKRCTEECPFGALDDDEKGTPKP----------NPTRCRRCGTCMGA 597

Query: 113 CPVDAIVEGP 122
           CP   I    
Sbjct: 598 CPERVISFDN 607


>gi|322418616|ref|YP_004197839.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Geobacter sp. M18]
 gi|320125003|gb|ADW12563.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           M18]
          Length = 428

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 7/64 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              RC  C  C  ICP  AI +              +  +    C+ CG+C   CP  A+
Sbjct: 288 DPARCTGCGRCTTICPVHAIAMVPQAAGS-------KAQLTSELCLGCGVCARNCPAGAV 340

Query: 119 VEGP 122
              P
Sbjct: 341 RLEP 344



 Score = 40.5 bits (93), Expect = 0.076,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 11/24 (45%)

Query: 100 MIKCIYCGLCQEACPVDAIVEGPN 123
             +C  CG C   CPV AI   P 
Sbjct: 289 PARCTGCGRCTTICPVHAIAMVPQ 312


>gi|257065418|ref|YP_003145090.1| 4Fe-4S protein [Slackia heliotrinireducens DSM 20476]
 gi|256793071|gb|ACV23741.1| 4Fe-4S protein [Slackia heliotrinireducens DSM 20476]
          Length = 414

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 20/53 (37%), Gaps = 11/53 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C   C + AI  E G              +   KCI CG C  ACP  AI
Sbjct: 36  CLRCVEACTSGAIIYEDGE-----------LQVHPKKCIGCGTCATACPTSAI 77



 Score = 42.0 bits (97), Expect = 0.025,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 7/61 (11%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + C +C++C   CP  A+             R          C+ C LC+  CP  AI
Sbjct: 311 DTDACTSCRMCTVFCPTGALFRVDEDDTWGVAHR-------ASACVQCRLCENLCPQHAI 363

Query: 119 V 119
            
Sbjct: 364 H 364


>gi|237653652|ref|YP_002889966.1| electron transport complex, RnfABCDGE type subunit beta [Thauera
           sp. MZ1T]
 gi|237624899|gb|ACR01589.1| electron transport complex, RnfABCDGE type, B subunit [Thauera sp.
           MZ1T]
          Length = 179

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 20/58 (34%), Gaps = 10/58 (17%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           CI C  C   CP  AI   +             + +    CI CG C E CP   I  
Sbjct: 112 CIGCSRCIKSCPTDAILGATKQ----------LHVVLEEACIGCGACAEVCPTGGIDL 159


>gi|152991795|ref|YP_001357516.1| pyruvate flavodoxin oxidoreductase subunit delta [Sulfurovum sp.
           NBC37-1]
 gi|151423656|dbj|BAF71159.1| pyruvate:ferredoxin oxidoreductase, delta subunit [Sulfurovum sp.
           NBC37-1]
          Length = 151

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 21/58 (36%), Gaps = 10/58 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
             + CI C+ C   C          P     +R      ID   C  CG+C E CP +
Sbjct: 75  NIDVCIDCQNCWVWC----------PDTSIISRDKQMLGIDYDHCKGCGVCVEVCPTN 122


>gi|149925367|ref|ZP_01913631.1| Formate dehydrogenase, alpha subunit [Limnobacter sp. MED105]
 gi|149825484|gb|EDM84692.1| Formate dehydrogenase, alpha subunit [Limnobacter sp. MED105]
          Length = 912

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 5/64 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114
             + CI C  C   C  +    +       G    + +D    +    C+ CG C +ACP
Sbjct: 146 NMDHCIQCTRCVRACR-EVQVNDVIGLAFRGEHAAIVFDQGDALAQSTCVACGECVQACP 204

Query: 115 VDAI 118
             A+
Sbjct: 205 TGAL 208


>gi|18858217|ref|NP_572538.1| suppressor of rudimentary, isoform B [Drosophila melanogaster]
 gi|24640763|ref|NP_727320.1| suppressor of rudimentary, isoform C [Drosophila melanogaster]
 gi|10728539|gb|AAF46461.2| suppressor of rudimentary, isoform B [Drosophila melanogaster]
 gi|22831986|gb|AAN09247.1| suppressor of rudimentary, isoform C [Drosophila melanogaster]
 gi|24850449|gb|AAN64918.1| dihydropyrimidine dehydrogenase [Drosophila melanogaster]
 gi|189181839|gb|ACD81696.1| GH13260p [Drosophila melanogaster]
          Length = 1031

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 18/65 (27%), Gaps = 8/65 (12%)

Query: 59   GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP-VDA 117
             ++ CI C  C   C                  +          C  C LC   CP +D 
Sbjct: 949  DDDMCINCGKCYMTCA-------DSGYQAIEFDKDTHIPHVNDDCTGCTLCVSVCPIIDC 1001

Query: 118  IVEGP 122
            I   P
Sbjct: 1002 ITMVP 1006


>gi|75910853|ref|YP_325149.1| bidirectional hydrogenase complex protein HoxU [Anabaena variabilis
           ATCC 29413]
 gi|1032477|emb|CAA55874.1| hydrogenase subunit [Anabaena variabilis ATCC 29413]
 gi|75704578|gb|ABA24254.1| NAD(P)-dependent nickel-iron dehydrogenase diaphorase component
           subunit HoxU [Anabaena variabilis ATCC 29413]
          Length = 238

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 22/65 (33%), Gaps = 4/65 (6%)

Query: 59  GEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLCQEACP 114
              RC+ C  C  +C     A T +   R  +    T           C  CG C  ACP
Sbjct: 144 DHNRCVLCTRCIRVCDEIEGAHTWDMAGRGTNSHVITDLSQPWGTSDTCTSCGKCVNACP 203

Query: 115 VDAIV 119
             AI 
Sbjct: 204 TGAIF 208


>gi|86142077|ref|ZP_01060601.1| iron-sulfur cluster-binding protein [Leeuwenhoekiella blandensis
           MED217]
 gi|85831640|gb|EAQ50096.1| iron-sulfur cluster-binding protein [Leeuwenhoekiella blandensis
           MED217]
          Length = 529

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 15/94 (15%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           +CI+C  C + C           +           +I    C+ CG+C   CP   +   
Sbjct: 451 QCISCGNCSSYCEMGIDVRAYAQKGE---------NIVRASCVGCGICSAVCPRGVLKLE 501

Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRN 155
                +TE R      +E LL N       + +N
Sbjct: 502 N---ASTEKR---INSREVLLGNDVDLMDYLNQN 529


>gi|315924015|ref|ZP_07920242.1| dihydroorotate dehydrogenase [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315622641|gb|EFV02595.1| dihydroorotate dehydrogenase [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 418

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 31/95 (32%), Gaps = 9/95 (9%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R    L +      +C+ C  C   C         G +      +  R  ID  KC+ C 
Sbjct: 332 RSYKVLVQINED--KCVGCGRCYVSCYDG------GHQAIQFDSQARRATIDEDKCVGCH 383

Query: 108 LCQEACPVD-AIVEGPNFEFATETRQELYYDKERL 141
           LC   CPV   I  G       E   +L    + L
Sbjct: 384 LCLNVCPVMDCITPGKIVFKDGEAPHDLSLKTQYL 418


>gi|299771076|ref|YP_003733102.1| NADH:ubiquinone oxidoreductase, subunit RnfB [Acinetobacter sp.
           DR1]
 gi|298701164|gb|ADI91729.1| NADH:ubiquinone oxidoreductase, subunit RnfB [Acinetobacter sp.
           DR1]
          Length = 263

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 28/85 (32%), Gaps = 10/85 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E      +  G     +    E+ CI C  C + CP  AI               + + I
Sbjct: 68  ESSVWPVQTDGRPQRMKAIIREDECIGCTKCISACPVDAIIGSGK----------LMHTI 117

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPN 123
               C  C LC   CPVD I    +
Sbjct: 118 LTDLCTGCELCIPPCPVDCIDLVED 142


>gi|224582936|ref|YP_002636734.1| polyferredoxin [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
 gi|224467463|gb|ACN45293.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 287

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 25/78 (32%), Gaps = 12/78 (15%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            + C  C  C   CP   I  +                I   +C  CG C   CP  A+ 
Sbjct: 190 PQECRMCGACWRSCPENVIQFDDD-----------TLTIAAARCTGCGGCAAVCPHQALR 238

Query: 120 EGPNFEFATETRQELYYD 137
              + E A+ TR    + 
Sbjct: 239 LRFDVEPAS-TRHSAVHT 255



 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 11/50 (22%)

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  +CPAQA ++  G              ID  +CI CG C   CPVDAI
Sbjct: 29  CADVCPAQAFSLAQGQVS-----------IDTTRCIACGDCLFVCPVDAI 67


>gi|222109235|ref|YP_002551499.1| 4fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Acidovorax ebreus TPSY]
 gi|221728679|gb|ACM31499.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidovorax
           ebreus TPSY]
          Length = 77

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +RC  C  C  +CP   ++++       G +R+V +D     C  C LC   CP DAI
Sbjct: 12  DPQRCTGCGWCVGVCPPHVLSLQMQGPERFGPKRSVLHD--APGCTGCALCALRCPFDAI 69

Query: 119 VEGPN 123
               N
Sbjct: 70  RMVRN 74


>gi|213425327|ref|ZP_03358077.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
          Length = 281

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 25/78 (32%), Gaps = 12/78 (15%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            + C  C  C   CP   I  +                I   +C  CG C   CP  A+ 
Sbjct: 190 PQECRMCGACWRSCPENVIQFDDD-----------TLTIAAARCTGCGGCAAVCPHQALR 238

Query: 120 EGPNFEFATETRQELYYD 137
              + E A+ TR    + 
Sbjct: 239 LRFDVEPAS-TRHSAVHT 255



 Score = 34.7 bits (78), Expect = 4.1,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID  +CI CG C   CPVDAI
Sbjct: 47  IDTTRCIACGDCLFVCPVDAI 67


>gi|315231407|ref|YP_004071843.1| indolepyruvate oxidoreductase IorA-like subunit [Thermococcus
           barophilus MP]
 gi|315184435|gb|ADT84620.1| indolepyruvate oxidoreductase IorA-like subunit [Thermococcus
           barophilus MP]
          Length = 616

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 9/76 (11%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
           P  R           E++C+ CK C  +    A+  +             +  ID + C 
Sbjct: 542 PVIRRGEIGETPTVIEDKCVGCKACILLTGCPALVYDPETN---------KVRIDPLICT 592

Query: 105 YCGLCQEACPVDAIVE 120
            CG+C + CP +AI  
Sbjct: 593 GCGICNQLCPFEAIKF 608


>gi|158634530|gb|ABW76117.1| Fe-hydrogenase 2 [Trimastix pyriformis]
          Length = 292

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 6/63 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQEA 112
             + C+ C  C+ +CP  AI   + P                  +ID  KCI+CG CQ  
Sbjct: 149 DPDLCVRCGSCQKVCPYHAIVKLTVPCEEACPVGAIAKGANGHAEIDFNKCIHCGQCQVK 208

Query: 113 CPV 115
           CP 
Sbjct: 209 CPF 211



 Score = 42.0 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 5/61 (8%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTV-----RYDIDMIKCIYCGLCQEACPVDA 117
           C  C               + P      ++ +     +  ID   C+ CG CQ+ CP  A
Sbjct: 108 CRNCTQNAYFVTNACQGCVARPCMSTCPKKAISRVDGQAKIDPDLCVRCGSCQKVCPYHA 167

Query: 118 I 118
           I
Sbjct: 168 I 168


>gi|160893288|ref|ZP_02074075.1| hypothetical protein CLOL250_00837 [Clostridium sp. L2-50]
 gi|156864980|gb|EDO58411.1| hypothetical protein CLOL250_00837 [Clostridium sp. L2-50]
          Length = 622

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 24/70 (34%), Gaps = 11/70 (15%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           R      + CI C+ C       A+    G              ID   C  C LC + C
Sbjct: 559 RCMHIDTDACIGCQKCIREIGCPALYTFEGKV-----------CIDESLCTGCTLCSQLC 607

Query: 114 PVDAIVEGPN 123
           PV AI +G  
Sbjct: 608 PVHAIGDGQE 617


>gi|153811590|ref|ZP_01964258.1| hypothetical protein RUMOBE_01982 [Ruminococcus obeum ATCC 29174]
 gi|149832331|gb|EDM87416.1| hypothetical protein RUMOBE_01982 [Ruminococcus obeum ATCC 29174]
          Length = 298

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 36/107 (33%), Gaps = 12/107 (11%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           +                   E +CI C  C  ICP+ A  I++G               +
Sbjct: 33  RCKWCHNPETWKKKSILSYTENKCIGCGQCIEICPSGAQQIQNGQHI-----------YE 81

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGD 146
              C  CG C E C  +A+    ++ ++ E   EL     RL    +
Sbjct: 82  RTLCTVCGKCVEICCTEALEIVGSY-YSVEELSELLLRDRRLYEISE 127



 Score = 37.0 bits (84), Expect = 0.83,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 13/42 (30%)

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
                       +  ++         KCI CG C E CP  A
Sbjct: 29  GCNLRCKWCHNPETWKKKSILSYTENKCIGCGQCIEICPSGA 70


>gi|150400533|ref|YP_001324299.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus aeolicus Nankai-3]
 gi|150013236|gb|ABR55687.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           aeolicus Nankai-3]
          Length = 654

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 25/79 (31%), Gaps = 7/79 (8%)

Query: 59  GEERCIACKLCEAICPAQAIT-------IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            E +C  C  C  +CP +          I              +Y ID   CI C LC +
Sbjct: 242 DEAKCTGCGQCAEVCPIEVPNEFDMGLGIRKAIYKPFPQAVPAKYTIDKEHCIGCELCSK 301

Query: 112 ACPVDAIVEGPNFEFATET 130
            C   AI      E   E 
Sbjct: 302 VCGPGAINYSQEPEIIEEK 320



 Score = 36.2 bits (82), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 22/75 (29%), Gaps = 7/75 (9%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R           EE C  C +C   CP  A  +                ++    C  CG
Sbjct: 569 RVNVEPIVAEVNEEICGVCGICVKQCPYGAPRLVEKDGT-------CSLEVLSALCKGCG 621

Query: 108 LCQEACPVDAIVEGP 122
            C   CP  A+ +  
Sbjct: 622 TCIGGCPSGAMEQNH 636


>gi|78776475|ref|YP_392790.1| 4Fe-4S ferredoxin, iron-sulfur binding [Sulfurimonas denitrificans
           DSM 1251]
 gi|78497015|gb|ABB43555.1| 4Fe-4S ferredoxin, iron-sulfur binding [Sulfurimonas denitrificans
           DSM 1251]
          Length = 326

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/114 (19%), Positives = 33/114 (28%), Gaps = 12/114 (10%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           L       F+   +  K       P    S       + AL +     ++C  C  C  +
Sbjct: 201 LGLIFTGLFVVGSFIKKRFFCFFCP---MSAMHYIFSDAALLKLKKDGDKCTKCGDCYNV 257

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
           C  Q   I    +           +I    CI+C  C  ACP D  +       
Sbjct: 258 CDMQIKDIADDVKST---------NILRDDCIFCMKCVAACPEDDALHVDILNM 302


>gi|81301193|ref|YP_401401.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Synechococcus
           elongatus PCC 7942]
 gi|81170074|gb|ABB58414.1| Pyruvate:ferredoxin (flavodoxin) oxidoreductase [Synechococcus
           elongatus PCC 7942]
          Length = 1196

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 22/73 (30%), Gaps = 16/73 (21%)

Query: 58  NGEERCIACKLCEAICPAQ---AITIESG-------------PRCHDGTRRTVRYDIDMI 101
              + C+ C  C  +CP     A   ES               R    + R     +   
Sbjct: 684 WEPDLCVQCGKCLLVCPHGVIRAKVYESEVLEAAPETFKHAPARDATWSDRPFTIQVSTE 743

Query: 102 KCIYCGLCQEACP 114
            C  C LC E CP
Sbjct: 744 DCTGCQLCVEVCP 756


>gi|89897072|ref|YP_520559.1| hypothetical protein DSY4326 [Desulfitobacterium hafniense Y51]
 gi|89336520|dbj|BAE86115.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 460

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 25/71 (35%), Gaps = 6/71 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110
              + RC+ C LC   CP  AI     P       + +         I    C  CG C 
Sbjct: 124 FIDQTRCVECGLCARNCPYHAIIEYRRPCEDSCPTKAISVREDRIASIAEAHCTSCGKCI 183

Query: 111 EACPVDAIVEG 121
            +CP  A+ E 
Sbjct: 184 ISCPFGAVAES 194



 Score = 42.4 bits (98), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-----IDMIKCIYCGLCQEACPVDA 117
           C  C++                   +  ++ + +      ID  +C+ CGLC   CP  A
Sbjct: 85  CNGCEMHRYSVTDHCQNCVGHFCFTNCPKKAILFINNKAFIDQTRCVECGLCARNCPYHA 144

Query: 118 IVE 120
           I+E
Sbjct: 145 IIE 147


>gi|56751730|ref|YP_172431.1| pyruvate flavodoxin oxidoreductase [Synechococcus elongatus PCC
           6301]
 gi|56686689|dbj|BAD79911.1| pyruvate flavodoxin oxidoreductase [Synechococcus elongatus PCC
           6301]
          Length = 1196

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 22/73 (30%), Gaps = 16/73 (21%)

Query: 58  NGEERCIACKLCEAICPAQ---AITIESG-------------PRCHDGTRRTVRYDIDMI 101
              + C+ C  C  +CP     A   ES               R    + R     +   
Sbjct: 684 WEPDLCVQCGKCLLVCPHGVIRAKVYESEVLEAAPETFKHAPARDATWSDRPFTIQVSTE 743

Query: 102 KCIYCGLCQEACP 114
            C  C LC E CP
Sbjct: 744 DCTGCQLCVEVCP 756


>gi|219667057|ref|YP_002457492.1| hydrogenase large subunit domain protein [Desulfitobacterium
           hafniense DCB-2]
 gi|219537317|gb|ACL19056.1| hydrogenase large subunit domain protein [Desulfitobacterium
           hafniense DCB-2]
          Length = 454

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 25/71 (35%), Gaps = 6/71 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110
              + RC+ C LC   CP  AI     P       + +         I    C  CG C 
Sbjct: 118 FIDQTRCVECGLCARNCPYHAIIEYRRPCEDSCPTKAISVREDRIASIAEAHCTSCGKCI 177

Query: 111 EACPVDAIVEG 121
            +CP  A+ E 
Sbjct: 178 ISCPFGAVAES 188



 Score = 42.4 bits (98), Expect = 0.019,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-----IDMIKCIYCGLCQEACPVDA 117
           C  C++                   +  ++ + +      ID  +C+ CGLC   CP  A
Sbjct: 79  CNGCEMHRYSVTDHCQNCVGHFCFTNCPKKAILFINNKAFIDQTRCVECGLCARNCPYHA 138

Query: 118 IVE 120
           I+E
Sbjct: 139 IIE 141


>gi|328952049|ref|YP_004369383.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Desulfobacca acetoxidans DSM 11109]
 gi|328452373|gb|AEB08202.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Desulfobacca acetoxidans DSM 11109]
          Length = 1014

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 23/67 (34%), Gaps = 11/67 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E C AC +C   CP     I                 ID  KC  CG+C   CP  AI
Sbjct: 943 DGEICAACLICVRACPFDVPFINDKGYSE----------IDPAKCHGCGVCAAECPAKAI 992

Query: 119 VEGPNFE 125
                FE
Sbjct: 993 QLM-QFE 998


>gi|325841965|ref|ZP_08167542.1| 4Fe-4S binding domain protein [Turicibacter sp. HGF1]
 gi|325489798|gb|EGC92153.1| 4Fe-4S binding domain protein [Turicibacter sp. HGF1]
          Length = 428

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 2/64 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E C+ C  C   CP  AI+          +     Y ++   C+ CG+C  AC   +I
Sbjct: 294 NHETCVKCGRCLRDCPIDAIS--KVKVDEGKSTERFEYQVNEEVCLGCGVCVSACFNKSI 351

Query: 119 VEGP 122
           +   
Sbjct: 352 MLKN 355


>gi|313682982|ref|YP_004060720.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Sulfuricurvum
           kujiense DSM 16994]
 gi|313155842|gb|ADR34520.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Sulfuricurvum
           kujiense DSM 16994]
          Length = 1188

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 25/91 (27%), Gaps = 25/91 (27%)

Query: 58  NGEERCIACKLCEAICPA--------QAITIESGPR---------CHDGTRRTVRYDIDM 100
              + CI C  C   CP          A  ++  P           + G        + +
Sbjct: 689 WDADTCIQCNKCVLACPHSVIRSSVFDASYLQGAPEGFSAKGAKGKNFGDNDVFAISVAV 748

Query: 101 IKCIYCGLCQEACPV--------DAIVEGPN 123
             C  C LC E CP          AI   P 
Sbjct: 749 EDCTGCALCVEVCPAKNKSQTNLKAINMMPQ 779


>gi|308485667|ref|XP_003105032.1| CRE-ABCE-1 protein [Caenorhabditis remanei]
 gi|308257353|gb|EFP01306.1| CRE-ABCE-1 protein [Caenorhabditis remanei]
          Length = 610

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 29/83 (34%), Gaps = 1/83 (1%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           KG        +  LR     ++RC   K C   C         G  C      +    I 
Sbjct: 4   KGPLVKNNETDQPLRIAIVEKDRCKP-KNCGLACKKACPVNRQGKLCIVVEATSTISSIS 62

Query: 100 MIKCIYCGLCQEACPVDAIVEGP 122
            I CI CG+C + CP DAI    
Sbjct: 63  EILCIGCGICVKKCPYDAIKIIN 85


>gi|260892206|ref|YP_003238303.1| hydrogenase, Fe-only [Ammonifex degensii KC4]
 gi|260864347|gb|ACX51453.1| hydrogenase, Fe-only [Ammonifex degensii KC4]
          Length = 549

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 29/92 (31%), Gaps = 14/92 (15%)

Query: 38  FEKGSTSPRFRGEHALRRYP----NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93
              G+     RG   +          + +C+ C  C  IC           R        
Sbjct: 59  DVAGTWPAHVRGRVPIDPNNPSIMRDDRKCVLCGQCLEICH----------RVQSVYGYY 108

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
                D I CI CG C  ACP  AI E  + E
Sbjct: 109 ELPIRDDIVCINCGQCSLACPTGAIQERDDTE 140


>gi|237709522|ref|ZP_04540003.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp.
           9_1_42FAA]
 gi|229456578|gb|EEO62299.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp.
           9_1_42FAA]
          Length = 300

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 15/80 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ++C+ C  C  +CP  A+T+       D             KC+ CG C E CP  AI  
Sbjct: 49  KKCLGCGTCLKVCPNGALTLTPEGIVTDKQ-----------KCVLCGRCAEECPAMAIEI 97

Query: 121 GPNFEFATETRQELYYDKER 140
                    T + L ++ E+
Sbjct: 98  SG----TEYTAEYLIHEIEK 113



 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 15/39 (38%)

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
              +G R          KC+ CG C + CP  A+   P 
Sbjct: 33  HNPEGIRNGKDKLYTAKKCLGCGTCLKVCPNGALTLTPE 71


>gi|226947232|ref|YP_002802323.1| iron-sulfur cluster-binding protein [Clostridium botulinum A2 str.
           Kyoto]
 gi|226841217|gb|ACO83883.1| iron-sulfur cluster-binding protein [Clostridium botulinum A2 str.
           Kyoto]
          Length = 387

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           E+CI C  C  +CP +   I    +             +M KCI C  CQE CP  AI
Sbjct: 319 EKCIGCNRCAEVCPEKPYVINMIKKGGKKIPVW-----NMKKCIRCFCCQELCPKGAI 371


>gi|217966958|ref|YP_002352464.1| hydrogenase, Fe-only [Dictyoglomus turgidum DSM 6724]
 gi|217336057|gb|ACK41850.1| hydrogenase, Fe-only [Dictyoglomus turgidum DSM 6724]
          Length = 666

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 3/70 (4%)

Query: 59  GEERCIACKLCEAICPAQ---AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
              +CI C  C  +C      A    +G            + +  ++C+YCG C   CP 
Sbjct: 140 DNTKCILCGDCVRVCEEVQGVAAIDIAGRGFLSKVTPAFGHSLSEVECVYCGQCVAYCPT 199

Query: 116 DAIVEGPNFE 125
            A+    + +
Sbjct: 200 GALSIRNDID 209


>gi|168243307|ref|ZP_02668239.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194449267|ref|YP_002046585.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|198245772|ref|YP_002216591.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|205353626|ref|YP_002227427.1| polyferredoxin [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|207857935|ref|YP_002244586.1| polyferredoxin [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|194407571|gb|ACF67790.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|197940288|gb|ACH77621.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|205273407|emb|CAR38382.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205337655|gb|EDZ24419.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|206709738|emb|CAR34090.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|326624347|gb|EGE30692.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
 gi|326628726|gb|EGE35069.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 287

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 22/73 (30%), Gaps = 11/73 (15%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            + C  C  C   CP   I  +                I   +C  CG C   CP  A+ 
Sbjct: 190 PQECRMCGACWRSCPENVIQFDDN-----------TLTIAAARCTGCGGCAAVCPHQALR 238

Query: 120 EGPNFEFATETRQ 132
              + E A+    
Sbjct: 239 LRFDVEPASTRHS 251



 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 11/50 (22%)

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  +CPAQA ++  G              ID  +CI CG C   CPVDAI
Sbjct: 29  CADVCPAQAFSLAQGQVS-----------IDTTRCIACGDCLFVCPVDAI 67


>gi|166712771|ref|ZP_02243978.1| ferredoxin [Xanthomonas oryzae pv. oryzicola BLS256]
          Length = 142

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 31/85 (36%), Gaps = 11/85 (12%)

Query: 39  EKGSTSPRFRGEHAL-RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
                  R RG + L +     E  CI C  C   CP  AI          G  + +   
Sbjct: 66  VPARPYDRSRGAYKLPQVAWIVEADCIGCTKCIQACPVDAIV---------GGAKHMHTV 116

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           I  + C  C LC  ACPVD I   P
Sbjct: 117 IAPL-CTGCELCLPACPVDCIQLHP 140


>gi|139438187|ref|ZP_01771740.1| Hypothetical protein COLAER_00728 [Collinsella aerofaciens ATCC
           25986]
 gi|133776384|gb|EBA40204.1| Hypothetical protein COLAER_00728 [Collinsella aerofaciens ATCC
           25986]
          Length = 417

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 10/64 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               ++C +C  C  +CP  A  +    R          + ++   C+ CG C + CP  
Sbjct: 312 ECDFDKCTSCGECVNVCPTFACDLVGSGR----------FALESTYCLGCGACVKVCPEH 361

Query: 117 AIVE 120
           A+  
Sbjct: 362 ALKL 365



 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/55 (23%), Positives = 18/55 (32%), Gaps = 2/55 (3%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           I C  C+    +            +           +  C  CGLC  ACP +AI
Sbjct: 53  IPCLACKN-EKSGCTACM-DVCPVNAIEIEEDAIEILDSCRKCGLCAAACPTEAI 105


>gi|134045159|ref|YP_001096645.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C5]
 gi|132662784|gb|ABO34430.1| membrane-bound hydrogenase subunit ehaR [Methanococcus maripaludis
           C5]
          Length = 252

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 10/77 (12%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
             +  L+++   EE CI C +CE  CP  AI +E          +    DI++  C+ C 
Sbjct: 119 HRKIRLKKHELDEESCIKCGICERFCPTSAIKVE----------KRTSIDINLDLCMGCT 168

Query: 108 LCQEACPVDAIVEGPNF 124
            C++ CP  +I      
Sbjct: 169 ACEKVCPKSSIKVENEM 185



 Score = 42.0 bits (97), Expect = 0.031,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 30/83 (36%), Gaps = 11/83 (13%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P                       + CI C +C  ICP  AI  E G            
Sbjct: 174 CPKSSIKVENEMGEIPTENVISLNNDTCINCMVCSEICPVGAIIYEDG-----------L 222

Query: 96  YDIDMIKCIYCGLCQEACPVDAI 118
             +D  KCI+CG C++ CPV AI
Sbjct: 223 MKLDDKKCIFCGKCEKNCPVTAI 245



 Score = 40.1 bits (92), Expect = 0.091,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 9/82 (10%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
            E      +       R       +C+ C+LC  +CP QAI   S              +
Sbjct: 23  EESVKKKLQDIIVPVERNLYVETNKCVRCELCYEVCPVQAIKEPSVKSPA---------E 73

Query: 98  IDMIKCIYCGLCQEACPVDAIV 119
           I   KC+ C +C + CPV AI 
Sbjct: 74  IIPEKCVKCEICAKTCPVGAIN 95



 Score = 38.5 bits (88), Expect = 0.32,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 15/74 (20%)

Query: 60  EERCIACKLCEAICPAQAI---------------TIESGPRCHDGTRRTVRYDIDMIKCI 104
            E+C+ C++C   CP  AI                            R  ++++D   CI
Sbjct: 76  PEKCVKCEICAKTCPVGAINVLEGRAELKDDNVIYELKEIDVTHRKIRLKKHELDEESCI 135

Query: 105 YCGLCQEACPVDAI 118
            CG+C+  CP  AI
Sbjct: 136 KCGICERFCPTSAI 149


>gi|146303327|ref|YP_001190643.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Metallosphaera sedula DSM 5348]
 gi|145701577|gb|ABP94719.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Metallosphaera sedula DSM 5348]
          Length = 610

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 28/91 (30%), Gaps = 4/91 (4%)

Query: 27  FFKAKTT--INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84
           F +   T  +    +    S       +     +    CI C  C ++CP  A   +   
Sbjct: 246 FIRKDVTKFVALSNKPLDLSSLTLDPFSDENSQDLFSGCILCGKCVSVCPHVAQRGDKDY 305

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
                    +  +     C  CG C + CPV
Sbjct: 306 SPLGFFVSGMSKE--YANCHLCGRCDDVCPV 334



 Score = 35.1 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 8/22 (36%), Positives = 10/22 (45%)

Query: 103 CIYCGLCQEACPVDAIVEGPNF 124
           CI CG C   CP  A     ++
Sbjct: 284 CILCGKCVSVCPHVAQRGDKDY 305


>gi|147918974|ref|YP_687300.1| 4(4Fe-4S) polyferredoxin [uncultured methanogenic archaeon RC-I]
 gi|110622696|emb|CAJ37974.1| 4(4Fe-4S) polyferredoxin [uncultured methanogenic archaeon RC-I]
          Length = 138

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 3/72 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
              +    CI C  C   CP  A   +              + +D  KC+ CG C + CP
Sbjct: 43  PDVHKIRICIQCGRCADACPMDAFYQDFNLLTTSEQ---GIFRLDEDKCVGCGECVQVCP 99

Query: 115 VDAIVEGPNFEF 126
            + +   P+   
Sbjct: 100 TNVLQFFPDIRM 111



 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 27/65 (41%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +  CI C  CEAIC     +  +  R              +  CI CG C +ACP+DA 
Sbjct: 7   NDNVCIHCHRCEAICTWAHESAFNPKRGRIIVDLEFPDVHKIRICIQCGRCADACPMDAF 66

Query: 119 VEGPN 123
            +  N
Sbjct: 67  YQDFN 71


>gi|78222251|ref|YP_383998.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Geobacter
           metallireducens GS-15]
 gi|78193506|gb|ABB31273.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Geobacter
           metallireducens GS-15]
          Length = 74

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 21/58 (36%), Gaps = 11/58 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C  C  C   CP  AI                 + ID   CI CG C + CP  AI
Sbjct: 25  DDCTNCGSCVDSCPVNAIAPAGDK-----------HKIDGDTCIDCGACVDTCPTSAI 71


>gi|146295766|ref|YP_001179537.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145409342|gb|ABP66346.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 373

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 10/57 (17%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
            +C+ C +C   C   AIT+    +            ID  KC+ CG C   C  +A
Sbjct: 194 SKCVGCGMCVKSCAQFAITLSEKKKAV----------IDYEKCVGCGQCVAVCQFEA 240



 Score = 35.5 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 4/61 (6%)

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVR----YDIDMIKCIYCGLCQEACPVDAIVE 120
             K  E      AI          G +  +       I   KC+ CG+C ++C   AI  
Sbjct: 154 HFKGHEMTGFGGAIKNIGMGSGSRGGKLFMHSSSKPVIKTSKCVGCGMCVKSCAQFAITL 213

Query: 121 G 121
            
Sbjct: 214 S 214


>gi|300854656|ref|YP_003779640.1| iron only hydrogenase [Clostridium ljungdahlii DSM 13528]
 gi|300434771|gb|ADK14538.1| iron only hydrogenase [Clostridium ljungdahlii DSM 13528]
          Length = 578

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 57  PNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEAC 113
               ++CI C+ CE +C   Q   + S       T  +  +   +   +C +CG C   C
Sbjct: 145 YRNLDKCIMCRRCETMCNEVQTCQVYSAVDRGFETVVSPAFGRPMVDTQCTFCGQCVSVC 204

Query: 114 PVDAIVEGPN 123
           P  A+ +  N
Sbjct: 205 PTAALTQVSN 214


>gi|170756030|ref|YP_001779637.1| iron-sulfur cluster-binding protein [Clostridium botulinum B1 str.
           Okra]
 gi|169121242|gb|ACA45078.1| iron-sulfur cluster-binding protein [Clostridium botulinum B1 str.
           Okra]
          Length = 387

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           E+CI C  C  +CP +   I    +             +M KCI C  CQE CP  AI
Sbjct: 319 EKCIGCNRCAEVCPEKPYVINMIEKGGKKIPVW-----NMKKCIRCFCCQELCPKGAI 371


>gi|150020242|ref|YP_001305596.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Thermosipho melanesiensis BI429]
 gi|149792763|gb|ABR30211.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Thermosipho melanesiensis BI429]
          Length = 110

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/87 (32%), Positives = 31/87 (35%), Gaps = 15/87 (17%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G   + R  +  E CI C +C   CP QAI IE              Y      C  CGL
Sbjct: 28  GTWRVIRPVHQPENCIHCMMCWLYCPDQAIVIEVVDGKPKMKGYNYYY------CKGCGL 81

Query: 109 CQEACP---------VDAIVEGPNFEF 126
           C   CP           AIV  P  EF
Sbjct: 82  CANVCPKTNDKLPEEKRAIVMKPETEF 108


>gi|84623478|ref|YP_450850.1| ferredoxin [Xanthomonas oryzae pv. oryzae MAFF 311018]
 gi|84367418|dbj|BAE68576.1| ferredoxin II [Xanthomonas oryzae pv. oryzae MAFF 311018]
          Length = 142

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 31/85 (36%), Gaps = 11/85 (12%)

Query: 39  EKGSTSPRFRGEHAL-RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
                  R RG H L +     E  CI C  C   CP  AI          G  + +   
Sbjct: 66  VPARPYDRSRGAHKLPQVAWIVEADCIGCTKCIHACPVDAIV---------GGAKHMHTV 116

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           I  + C  C LC  ACPVD I   P
Sbjct: 117 IAPL-CTGCELCLPACPVDCIELHP 140


>gi|313113355|ref|ZP_07798947.1| 4Fe-4S binding domain protein [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310624331|gb|EFQ07694.1| 4Fe-4S binding domain protein [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 256

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/116 (21%), Positives = 40/116 (34%), Gaps = 18/116 (15%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
            F   +  +   F  G  +P F             + CI C  C  +CP   I +E+G  
Sbjct: 152 EFPPPRENLYDRFMSGPVNPVFYRFFVKADAFRVTDACIGCGKCVELCPLNNIRLENGKP 211

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERL 141
                       +    C +C  C   CP +AI      E+  +++ +  Y  E L
Sbjct: 212 ------------VWGKNCTHCMACICYCPKEAI------EYGKKSKGKPRYHFEEL 249


>gi|302872613|ref|YP_003841249.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Caldicellulosiruptor obsidiansis OB47]
 gi|302575472|gb|ADL43263.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Caldicellulosiruptor obsidiansis OB47]
          Length = 373

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 10/57 (17%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
            +C+ C +C   C   AIT+    +            ID  KC+ CG C   C   A
Sbjct: 194 SKCVGCGMCVKSCAQLAITLNEKKKAA----------IDYEKCVGCGQCVAVCQFGA 240



 Score = 33.9 bits (76), Expect = 6.8,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 4/60 (6%)

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVR----YDIDMIKCIYCGLCQEACPVDAIVE 120
             K  E      AI          G +  +       I + KC+ CG+C ++C   AI  
Sbjct: 154 HFKGHEMTGFGGAIKNIGMGSGSRGGKLFMHSSSKPVIKVSKCVGCGMCVKSCAQLAITL 213


>gi|299742347|ref|XP_001832405.2| RNAse L inhibitor-type ATP binding cassette protein [Coprinopsis
           cinerea okayama7#130]
 gi|298405142|gb|EAU89439.2| RNAse L inhibitor-type ATP binding cassette protein [Coprinopsis
           cinerea okayama7#130]
          Length = 589

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              RC   K C   C      ++ G  C +         I    CI CG+C + CP +AI
Sbjct: 12  DSNRCKP-KRCAQECKKSCPVVKMGKLCIEVKPSDKIAFISEFLCIGCGICVKKCPFEAI 70


>gi|297616530|ref|YP_003701689.1| cobyrinic acid ac-diamide synthase [Syntrophothermus lipocalidus
           DSM 12680]
 gi|297144367|gb|ADI01124.1| Cobyrinic acid ac-diamide synthase [Syntrophothermus lipocalidus
           DSM 12680]
          Length = 285

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 29/81 (35%), Gaps = 15/81 (18%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
                     A RR     E+C+ C+LC  IC   AI+                Y +  +
Sbjct: 47  PQPRESEAFSASRRAWLDPEKCVKCELCMEICRFGAISD---------------YQVSDL 91

Query: 102 KCIYCGLCQEACPVDAIVEGP 122
            C  CG C   CPV+AI    
Sbjct: 92  DCEGCGFCSRICPVEAIRMED 112


>gi|292492764|ref|YP_003528203.1| electron transport complex, RnfABCDGE type subunit beta
           [Nitrosococcus halophilus Nc4]
 gi|291581359|gb|ADE15816.1| electron transport complex, RnfABCDGE type, B subunit
           [Nitrosococcus halophilus Nc4]
          Length = 209

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E RCI C LC   CP  AI   +             + +   +C  C LC   CPVD I
Sbjct: 108 DENRCIGCTLCIQACPVDAILGAAKQ----------LHTVIAAECTGCELCVAPCPVDCI 157

Query: 119 VEGP 122
              P
Sbjct: 158 EMVP 161



 Score = 37.8 bits (86), Expect = 0.55,   Method: Composition-based stats.
 Identities = 14/21 (66%), Positives = 16/21 (76%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID  +CI C LC +ACPVDAI
Sbjct: 107 IDENRCIGCTLCIQACPVDAI 127


>gi|301092714|ref|XP_002997210.1| ATP-binding cassette sub-family E member 1 [Phytophthora infestans
           T30-4]
 gi|262111520|gb|EEY69572.1| ATP-binding cassette sub-family E member 1 [Phytophthora infestans
           T30-4]
          Length = 626

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 22/56 (39%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           K C   C      +  G  C +   ++    I    CI CG+C + CP +AI    
Sbjct: 19  KKCRQECKKSCPVVRMGKLCIEVGPKSKVAFISEQLCIGCGICVKKCPFEAINIIN 74


>gi|260576447|ref|ZP_05844437.1| formate dehydrogenase, alpha subunit [Rhodobacter sp. SW2]
 gi|259021330|gb|EEW24636.1| formate dehydrogenase, alpha subunit [Rhodobacter sp. SW2]
          Length = 958

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 4/70 (5%)

Query: 55  RYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            +     +CI C  C   C       A+TI+                     C+ CG C 
Sbjct: 171 YFTYDPAKCIVCSRCVRACEEVQGTFALTIQGRGFDSRVVAGMTGDTFLTSDCVSCGACV 230

Query: 111 EACPVDAIVE 120
           +ACP   + E
Sbjct: 231 QACPTATLQE 240


>gi|218883519|ref|YP_002427901.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Desulfurococcus kamchatkensis 1221n]
 gi|218765135|gb|ACL10534.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Desulfurococcus kamchatkensis 1221n]
          Length = 160

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 9/56 (16%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           I C +C + CP  AI+          +R      ++  KCI CG+C   CP  AI 
Sbjct: 40  IPCNICVSACPFNAIS---------KSRIYEVPRLNPDKCIGCGVCVGKCPGLAIF 86


>gi|167630112|ref|YP_001680611.1| 4fe-4S ferredoxin, iron-sulfur binding domain protein
           [Heliobacterium modesticaldum Ice1]
 gi|167592852|gb|ABZ84600.1| 4fe-4S ferredoxin, iron-sulfur binding domain protein
           [Heliobacterium modesticaldum Ice1]
          Length = 373

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++C  C  C   CP  AI++              R  I   +CI CG C   CP  AI
Sbjct: 190 NDKCKVCGKCLRWCPVDAISLGE------------RAVIAGERCIGCGECTVTCPHKAI 236



 Score = 35.1 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 22/68 (32%), Gaps = 3/68 (4%)

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM---IKCIYCGLCQEACPVDAIVEG 121
             K  E      AI   +        +     D+      KC  CG C   CPVDAI  G
Sbjct: 152 HFKGHEMTGFGGAIKNLAMGLASRSGKLVQHQDVKPEVNDKCKVCGKCLRWCPVDAISLG 211

Query: 122 PNFEFATE 129
                A E
Sbjct: 212 ERAVIAGE 219


>gi|152992108|ref|YP_001357829.1| ferredoxin-like protein [Sulfurovum sp. NBC37-1]
 gi|151423969|dbj|BAF71472.1| ferredoxin-like protein [Sulfurovum sp. NBC37-1]
          Length = 383

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/114 (22%), Positives = 39/114 (34%), Gaps = 19/114 (16%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           L +     F  L+           P E          E +       +E C  C++C  I
Sbjct: 229 LPDKRKILFTTLKRAGVPDVFEVLPEE----------EISFVSQKYVDENCTNCQICYRI 278

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
           CP  A++ +          +      D + C+ C LC +AC  DAI     FE 
Sbjct: 279 CPTGALSSDG---------KFSLIHFDAMLCLKCRLCHDACEPDAIHLQKGFEI 323


>gi|148244307|ref|YP_001219001.1| electron transport complex protein RnfB [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326134|dbj|BAF61277.1| electron transport complex protein RnfB [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 181

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 25/81 (30%), Gaps = 10/81 (12%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E    +               E+ CI C LC   CP  A    S               +
Sbjct: 91  ETLELNAEHGETKPSHVVFVDEQACIGCTLCIQACPVDAFVGASKMMT----------QV 140

Query: 99  DMIKCIYCGLCQEACPVDAIV 119
            + +C  C LC   CPVD I 
Sbjct: 141 IINECTGCDLCIPVCPVDCIY 161


>gi|15679252|ref|NP_276369.1| polyferredoxin [Methanothermobacter thermautotrophicus str. Delta
           H]
 gi|2622353|gb|AAB85730.1| polyferredoxin [Methanothermobacter thermautotrophicus str. Delta
           H]
          Length = 448

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 3/60 (5%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +RCI C+ C   CP  AI   +  +       T+   ID   CI CGLC + CP DAI
Sbjct: 353 DTDRCILCEKCGIHCPVDAIPRTTMKKRSIKGGFTL---IDPRLCIGCGLCLDVCPEDAI 409



 Score = 40.5 bits (93), Expect = 0.072,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 10/91 (10%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93
           I+ P +    +   +              CI C LC  +CP  AI+ +            
Sbjct: 365 IHCPVDAIPRTTMKKRSIKGGFTLIDPRLCIGCGLCLDVCPEDAISRDESG--------- 415

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
               +D  KCI+CG C   CP  A++    F
Sbjct: 416 -LMIVDDDKCIHCGACSNICPARAVIFEREF 445



 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/94 (25%), Positives = 32/94 (34%), Gaps = 10/94 (10%)

Query: 39  EKGSTSPRFRGEHALRRYP-NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY- 96
            K       R   A R       +RC  C+ C+  CP  AI +++G       R      
Sbjct: 128 VKPPVKRTPRSHEATRVNVVTDTDRCTLCRRCQYYCPTGAIIVDTGEGVCTECRVCEDVC 187

Query: 97  --------DIDMIKCIYCGLCQEACPVDAIVEGP 122
                   +ID  KC  C  C   CP +AI    
Sbjct: 188 PVGAIEDLEIDPEKCTLCLKCMRECPSNAIYIDD 221



 Score = 39.3 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 11/74 (14%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R    +R   +  E CI+C +C  +CP  AIT+           R    ++D  +CI C 
Sbjct: 313 RSFQTVRWDGSVSEDCISCGICSELCPVDAITL-----------RRGSIEVDTDRCILCE 361

Query: 108 LCQEACPVDAIVEG 121
            C   CPVDAI   
Sbjct: 362 KCGIHCPVDAIPRT 375



 Score = 37.4 bits (85), Expect = 0.71,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 10/72 (13%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            A+R        CI C  C   CP +AI             R   Y +D  KC  CG+C+
Sbjct: 23  EAIRMIDGRAFSCITCGACMEACPNKAIRRN----------RYGGYVVDRAKCNACGVCE 72

Query: 111 EACPVDAIVEGP 122
             CPV++I    
Sbjct: 73  MTCPVNSIKIED 84



 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           A+       E+C  C  C   CP+ AI I+         R   R +  ++ C+ CGLC E
Sbjct: 191 AIEDLEIDPEKCTLCLKCMRECPSNAIYIDDFKVKIR--RAEDRGEGSIVSCLNCGLCAE 248

Query: 112 ACPVDAIVEGP 122
           +C   A+    
Sbjct: 249 SCERGALRMVD 259



 Score = 35.5 bits (80), Expect = 2.3,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 21/67 (31%), Gaps = 9/67 (13%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                    C++C  C  +C           R                 CI CG+C E C
Sbjct: 288 MVDGELRGYCVSCGRCVNVCDVSEARSFQTVRWDGSV---------SEDCISCGICSELC 338

Query: 114 PVDAIVE 120
           PVDAI  
Sbjct: 339 PVDAITL 345



 Score = 34.3 bits (77), Expect = 5.3,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 14/62 (22%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           Y     +C AC +CE  CP  +I IE G                   C  CGLC +ACP+
Sbjct: 58  YVVDRAKCNACGVCEMTCPVNSIKIEDGVVKGI--------------CARCGLCVDACPL 103

Query: 116 DA 117
            A
Sbjct: 104 GA 105


>gi|150018600|ref|YP_001310854.1| ferredoxin [Clostridium beijerinckii NCIMB 8052]
 gi|149905065|gb|ABR35898.1| ferredoxin [Clostridium beijerinckii NCIMB 8052]
          Length = 702

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 20/65 (30%), Gaps = 4/65 (6%)

Query: 59  GEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
              RC+AC  C   C        +  +                +    C +CG C E CP
Sbjct: 144 DLNRCVACGRCVRACNDIRGVGILDYDKNEEDRIYVGVKNGLSLSDANCRFCGACVEVCP 203

Query: 115 VDAIV 119
             A+ 
Sbjct: 204 TGALQ 208


>gi|329955029|ref|ZP_08296010.1| ferredoxin [Bacteroides clarus YIT 12056]
 gi|328526319|gb|EGF53334.1| ferredoxin [Bacteroides clarus YIT 12056]
          Length = 321

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 8/81 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------DMIKCIYCGLCQ 110
            E +C AC  C   CP   I I    +                       + CI CG C 
Sbjct: 169 DEAKCTACGACAKACPRSIIEIRPQGKKSRRVYVQCVNKDKGAVARKACTVACIGCGKCV 228

Query: 111 EACPVDAIVEGPNFEFATETR 131
           + CP +AI    N  +    +
Sbjct: 229 KVCPFEAITLENNLAYIDPNK 249



 Score = 42.4 bits (98), Expect = 0.020,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 22/61 (36%), Gaps = 9/61 (14%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+ C  C   C   AI +                ++D  KC  CG C +ACP   I   P
Sbjct: 142 CLGCGDCVVACQFDAIHMNPETGLP---------EVDEAKCTACGACAKACPRSIIEIRP 192

Query: 123 N 123
            
Sbjct: 193 Q 193



 Score = 40.5 bits (93), Expect = 0.091,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 11/60 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI C  C  +CP +AIT+E+               ID  KC  C  C+E CP   I
Sbjct: 217 CTVACIGCGKCVKVCPFEAITLENNLAY-----------IDPNKCKSCRKCEEVCPQGTI 265


>gi|312794392|ref|YP_004027315.1| 4fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Caldicellulosiruptor kristjanssonii 177R1B]
 gi|312181532|gb|ADQ41702.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Caldicellulosiruptor kristjanssonii 177R1B]
          Length = 373

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 10/57 (17%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
            +C+ C +C   C   AIT+    +            ID  KC+ CG C   C  +A
Sbjct: 194 SKCVGCGMCVKSCAQLAITLNEKKKAV----------IDYEKCVGCGQCVAVCQFEA 240



 Score = 33.9 bits (76), Expect = 7.6,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 4/60 (6%)

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVR----YDIDMIKCIYCGLCQEACPVDAIVE 120
             K  E      AI          G +  +       I + KC+ CG+C ++C   AI  
Sbjct: 154 HFKGHEMTGFGGAIKNIGMGSGSRGGKLFMHSSSKPVIKVSKCVGCGMCVKSCAQLAITL 213


>gi|301061640|ref|ZP_07202397.1| bidirectional hydrogenase complex protein HoxU family protein
           [delta proteobacterium NaphS2]
 gi|300444277|gb|EFK08285.1| bidirectional hydrogenase complex protein HoxU family protein
           [delta proteobacterium NaphS2]
          Length = 368

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 28/85 (32%), Gaps = 2/85 (2%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYD 97
                           +    + CI C  C  +C     A  +    R       + +  
Sbjct: 169 PPYVPSSDPIVDEDSLFKRAYDLCIGCLRCVRVCREIRGADALAFTVRDGRVVVGSNQPS 228

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           +    C YCG+C E CP  A+++G 
Sbjct: 229 LKESGCKYCGVCVEVCPTGALLDGD 253


>gi|242241404|ref|YP_002989585.1| oxidoreductase Fe-S binding subunit [Dickeya dadantii Ech703]
 gi|242133461|gb|ACS87763.1| glutamate synthase, small subunit [Dickeya dadantii Ech703]
          Length = 671

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 15/85 (17%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACK--LCEAICPAQAITIESGPRCHDGTRRT 93
           YP  K    PR R  H  +   +    C  C+   C ++CP QA+            R+ 
Sbjct: 31  YPESKEHFKPRIRVFH--QAERHTAVTCRHCEDAPCASVCPTQALV-----------RKN 77

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAI 118
               +   KCI C  C  ACP  AI
Sbjct: 78  ESIQLIQEKCIGCKTCVLACPFGAI 102



 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 5/73 (6%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           +E+CI CK C   CP  AI++E+        +  +  D    +      C  ACP  A+ 
Sbjct: 84  QEKCIGCKTCVLACPFGAISVETQQGTATAHKCDLCADRAEGQ-----ACVAACPTQALQ 138

Query: 120 EGPNFEFATETRQ 132
                    + R+
Sbjct: 139 LVSERSLEEQRRE 151



 Score = 34.7 bits (78), Expect = 4.3,   Method: Composition-based stats.
 Identities = 13/71 (18%), Positives = 19/71 (26%), Gaps = 6/71 (8%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK----CIYC--GLCQEA 112
             + C+ C+ CE  C                  R   +          C +C    C   
Sbjct: 8   NTKDCMGCRACEIACVISHNQGVYPESKEHFKPRIRVFHQAERHTAVTCRHCEDAPCASV 67

Query: 113 CPVDAIVEGPN 123
           CP  A+V    
Sbjct: 68  CPTQALVRKNE 78


>gi|269837679|ref|YP_003319907.1| molybdopterin oxidoreductase [Sphaerobacter thermophilus DSM 20745]
 gi|269786942|gb|ACZ39085.1| molybdopterin oxidoreductase [Sphaerobacter thermophilus DSM 20745]
          Length = 798

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 9/87 (10%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-----AQAITIESGPRCHDGTR 91
           P+ +   +  +   H         +RCI C  C  +C           +  G     G  
Sbjct: 131 PYRRPKLAKPY--THLSDVIDYKWDRCIMCARCTRVCDEVIGVTAIGVLNRGLEAEIGPA 188

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAI 118
                D+    C  CG+C   CPV A+
Sbjct: 189 YGT--DLREGTCTSCGMCIAVCPVGAL 213


>gi|206900688|ref|YP_002250628.1| ferredoxin 2 [Dictyoglomus thermophilum H-6-12]
 gi|206739791|gb|ACI18849.1| ferredoxin 2 [Dictyoglomus thermophilum H-6-12]
          Length = 443

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 11/66 (16%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +       +RC  C  C   CP +A+ + +G              I   +CI CG C  
Sbjct: 5   YIHSVAINLQRCRGCIHCIRHCPTEAMRVRNGKSL-----------IIPYRCIDCGECIR 53

Query: 112 ACPVDA 117
            CP  A
Sbjct: 54  VCPYHA 59


>gi|281357444|ref|ZP_06243932.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548]
 gi|281316047|gb|EFB00073.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548]
          Length = 573

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 14/68 (20%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
           +AL      + +C+ C+LC   CP  AI+ +              + +D  KC  C  C 
Sbjct: 512 NALVDLKLDQSKCVKCRLCIKNCPVGAISDD--------------FVVDNTKCTRCNTCV 557

Query: 111 EACPVDAI 118
           + CP  AI
Sbjct: 558 DICPKKAI 565


>gi|66354366|gb|AAY44826.1| suppressor-of-rudimentary dihydropyrimidine dehydrogenase mutant
            [Drosophila melanogaster]
          Length = 1031

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 18/65 (27%), Gaps = 8/65 (12%)

Query: 59   GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP-VDA 117
             ++ CI C  C   C                  +          C  C LC   CP +D 
Sbjct: 949  DDDMCINCGKCYMTCA-------DSGYQAIEFDKDTHIPHVNDDCTGCTLCVSVCPIIDC 1001

Query: 118  IVEGP 122
            I   P
Sbjct: 1002 ITMVP 1006


>gi|57234516|ref|YP_181463.1| pyruvic-ferredoxin oxidoreductase, delta subunit [Dehalococcoides
           ethenogenes 195]
 gi|57224964|gb|AAW40021.1| pyruvic-ferredoxin oxidoreductase, delta subunit [Dehalococcoides
           ethenogenes 195]
          Length = 86

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 10/87 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E G+ S    G+   +   +  ++CI C LC   CP   I                 ++ 
Sbjct: 9   EPGNASQYKTGDWRSQLPVHNFKKCIKCGLCYVFCPEACINETKEG----------FFEA 58

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFE 125
           D+  C  CG+C   CP  AIV     E
Sbjct: 59  DLFYCKGCGICAHECPTGAIVMKDEEE 85


>gi|332159393|ref|YP_004424672.1| indolepyruvate ferredoxin oxidoreductase alpha subunit [Pyrococcus
           sp. NA2]
 gi|331034856|gb|AEC52668.1| indolepyruvate ferredoxin oxidoreductase alpha subunit [Pyrococcus
           sp. NA2]
          Length = 613

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 9/79 (11%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
           P  R           E++C  CK C  +    A+  +   R         +  ID + C 
Sbjct: 542 PVIRRGETREPPIIIEDKCTGCKACILLSGCPALIYDPETR---------KVKIDELICT 592

Query: 105 YCGLCQEACPVDAIVEGPN 123
            CG+C + CP DAI     
Sbjct: 593 GCGICNQLCPFDAIKFKEE 611


>gi|317487063|ref|ZP_07945871.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
 gi|316921745|gb|EFV43023.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
          Length = 543

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 15/91 (16%)

Query: 43  TSPRFRGEHALRRYPN-GEERCIACKLCEAICPAQAI---------TIESGPRCHDGTRR 92
            + +  G + LR   +   ERC  C  C A C   A+         T+    +       
Sbjct: 4   VTTQDIGVNDLRWIIDYRPERCTMCGSCVASCTLNALEVAVMRQDLTVSRASQPEPVREH 63

Query: 93  TVRYDIDM-----IKCIYCGLCQEACPVDAI 118
             R  I         C+ CG+C++ CP  AI
Sbjct: 64  LARPVIRQKASLTGSCVGCGMCEKVCPNQAI 94


>gi|308273571|emb|CBX30173.1| hypothetical protein N47_D29820 [uncultured Desulfobacterium sp.]
          Length = 280

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 21/63 (33%), Gaps = 11/63 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E +C  C  C  IC  +AI +                      C  CG C + CP  AI
Sbjct: 63  DEAKCTFCGKCAEICQFKAIMVLGE-----------VILTFPEMCHSCGGCMKVCPAGAI 111

Query: 119 VEG 121
            E 
Sbjct: 112 KET 114


>gi|218133625|ref|ZP_03462429.1| hypothetical protein BACPEC_01494 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991000|gb|EEC57006.1| hypothetical protein BACPEC_01494 [Bacteroides pectinophilus ATCC
           43243]
          Length = 1174

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 28/101 (27%), Gaps = 17/101 (16%)

Query: 28  FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ----------- 76
           FK      +P  +G+ +   RG           E CI C  C  +CP             
Sbjct: 660 FKNVIDGTFP--QGTAAYEKRGVAVDVP-CWNSESCIQCNQCAYVCPHAVIRPVVMNEEE 716

Query: 77  ---AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
              A                    + ++ C  CG C   CP
Sbjct: 717 KNAAPAGMKVHAMTGMPGYYFAMTVSVLDCTGCGSCTNVCP 757


>gi|160938172|ref|ZP_02085527.1| hypothetical protein CLOBOL_03065 [Clostridium bolteae ATCC
           BAA-613]
 gi|158438545|gb|EDP16302.1| hypothetical protein CLOBOL_03065 [Clostridium bolteae ATCC
           BAA-613]
          Length = 254

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 27/72 (37%), Gaps = 12/72 (16%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
            +R    +   P     CI+C LC A CP QAI + +                   +CI 
Sbjct: 166 PYRDWKQMPVIPLTNASCISCGLCAARCPVQAIPVSNPSSTDQ------------ARCIL 213

Query: 106 CGLCQEACPVDA 117
           C  C   CPV A
Sbjct: 214 CMRCISVCPVKA 225



 Score = 38.2 bits (87), Expect = 0.37,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 17/41 (41%)

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            G R +   ++     +    CI CGLC   CPV AI    
Sbjct: 162 PGNRPYRDWKQMPVIPLTNASCISCGLCAARCPVQAIPVSN 202


>gi|152979394|ref|YP_001345023.1| electron transport complex protein RnfB [Actinobacillus
           succinogenes 130Z]
 gi|150841117|gb|ABR75088.1| electron transport complex, RnfABCDGE type, B subunit
           [Actinobacillus succinogenes 130Z]
          Length = 189

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 10/70 (14%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             ++     E+ CI C  C   CP  AI   +             + +    C  C LC 
Sbjct: 99  PEIKVAFIHEDMCIGCTKCVQACPVDAIIGTNK----------TLHTVIPELCTGCELCV 148

Query: 111 EACPVDAIVE 120
             CP D I  
Sbjct: 149 APCPTDCITM 158



 Score = 37.4 bits (85), Expect = 0.66,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 14/25 (56%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           I    CI C  C +ACPVDAI+   
Sbjct: 106 IHEDMCIGCTKCVQACPVDAIIGTN 130


>gi|85857982|ref|YP_460184.1| iron-sulfur protein associated with hydrogenases [Syntrophus
           aciditrophicus SB]
 gi|85721073|gb|ABC76016.1| iron-sulfur protein associated with hydrogenases [Syntrophus
           aciditrophicus SB]
          Length = 280

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 10/59 (16%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           Y     +C AC  C   CP  AI    G            + ID  KCI CG C E CP
Sbjct: 198 YYIDPGKCQACMTCARKCPVDAIISAKGQ----------VHVIDQDKCIKCGTCFEVCP 246


>gi|110634782|ref|YP_674990.1| 4Fe-4S ferredoxin, iron-sulfur binding [Mesorhizobium sp. BNC1]
 gi|110285766|gb|ABG63825.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Chelativorans sp.
           BNC1]
          Length = 680

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 22/72 (30%), Gaps = 9/72 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E C  C  C + CP  A++                       C+ CGLC   CP   I
Sbjct: 520 DVEGCTLCLSCVSACPTGALSDSEDRPALY---------FSESACVQCGLCAATCPEQVI 570

Query: 119 VEGPNFEFATET 130
              P  +F    
Sbjct: 571 TLVPQVDFQAWN 582



 Score = 41.6 bits (96), Expect = 0.035,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 17/54 (31%), Gaps = 11/54 (20%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
             C  C  +CP  AIT                  ID   C  CG C   CP  A
Sbjct: 285 TGCTRCLDLCPTGAITPAGN-----------HVAIDAEICAGCGNCAAVCPTGA 327


>gi|312135897|ref|YP_004003235.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Caldicellulosiruptor owensensis OL]
 gi|311775948|gb|ADQ05435.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Caldicellulosiruptor owensensis OL]
          Length = 373

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 10/57 (17%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
            +C+ C +C   C   AIT+    +            ID  KC+ CG C   C   A
Sbjct: 194 SKCVGCGMCVKSCAQLAITLNEKKKAV----------IDYEKCVGCGQCVAVCQFGA 240



 Score = 33.9 bits (76), Expect = 6.8,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 4/60 (6%)

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVR----YDIDMIKCIYCGLCQEACPVDAIVE 120
             K  E      AI          G +  +       I + KC+ CG+C ++C   AI  
Sbjct: 154 HFKGHEMTGFGGAIKNIGMGSGSRGGKLFMHSSSKPVIKVSKCVGCGMCVKSCAQLAITL 213


>gi|123142348|sp|Q0QLF7|HNR_EUBBA RecName: Full=6-hydroxynicotinate reductase
 gi|86278261|gb|ABC88393.1| 6-hydroxynicotinate reductase [Eubacterium barkeri]
          Length = 499

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 8/64 (12%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            +   EE+C  C++C   CP  A+  E   +                KC+ CG+C+  C 
Sbjct: 1   MFKIDEEKCKKCRMCVKECPVHAVYYEKKDKGAIVE--------ITEKCVECGICKRVCK 52

Query: 115 VDAI 118
             AI
Sbjct: 53  FGAI 56



 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIV 119
            + ID  KC  C +C + CPV A+ 
Sbjct: 1   MFKIDEEKCKKCRMCVKECPVHAVY 25


>gi|15642824|ref|NP_227865.1| iron-sulfur cluster-binding protein [Thermotoga maritima MSB8]
 gi|148270010|ref|YP_001244470.1| hypothetical protein Tpet_0875 [Thermotoga petrophila RKU-1]
 gi|170288694|ref|YP_001738932.1| hypothetical protein TRQ2_0897 [Thermotoga sp. RQ2]
 gi|4980533|gb|AAD35142.1|AE001691_16 iron-sulfur cluster-binding protein [Thermotoga maritima MSB8]
 gi|147735554|gb|ABQ46894.1| protein of unknown function DUF362 [Thermotoga petrophila RKU-1]
 gi|170176197|gb|ACB09249.1| protein of unknown function DUF362 [Thermotoga sp. RQ2]
          Length = 261

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 13/71 (18%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
              ++       +C+ C+LCE  CPA AI I S               ID  KCI C +C
Sbjct: 199 RFFVKYPKIDTRKCVKCRLCEERCPASAIDISSQ-------------RIDYQKCIRCYVC 245

Query: 110 QEACPVDAIVE 120
            E CP DAI  
Sbjct: 246 HEVCPQDAIKL 256


>gi|328953787|ref|YP_004371121.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
 gi|328454111|gb|AEB09940.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109]
          Length = 882

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 60  EERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
             RC+ C  C  +C     A  I    R   G    +      + C +CG C E CPV A
Sbjct: 144 NTRCVTCGRCVRVCRERVGASAINFENR---GYFTDLGSGQQPLNCEFCGTCIEVCPVGA 200

Query: 118 I 118
           +
Sbjct: 201 L 201



 Score = 35.5 bits (80), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 21/77 (27%), Gaps = 8/77 (10%)

Query: 45  PRFRGEHALRRYPNGEERCIAC---KLCEAICPAQA-----ITIESGPRCHDGTRRTVRY 96
              R E       N    C  C     CE            +  E+  +  +    +   
Sbjct: 81  KSIRRELVKFMLVNHPLDCPWCDKGGECELQNLTHELGIAEVDYEAARKPINNDVESPLI 140

Query: 97  DIDMIKCIYCGLCQEAC 113
           +    +C+ CG C   C
Sbjct: 141 ERYNTRCVTCGRCVRVC 157


>gi|317483802|ref|ZP_07942742.1| ferredoxin oxidoreductase [Bilophila wadsworthia 3_1_6]
 gi|316924905|gb|EFV46051.1| ferredoxin oxidoreductase [Bilophila wadsworthia 3_1_6]
          Length = 1165

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 15/81 (18%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIE----------SGPRCHDGTRRTVRYD 97
           RG   +    +  E+C+ C  C   CP  AI                  H   R    ++
Sbjct: 667 RGAAIMVPVWD-AEKCVQCNKCAFACPHAAIRPRLLSAEEAVAAPASIEHRPCRIQKGFE 725

Query: 98  IDMI----KCIYCGLCQEACP 114
             M      C  CG+C   CP
Sbjct: 726 FHMAISVLDCTGCGVCVGQCP 746


>gi|315924269|ref|ZP_07920493.1| pyruvate-ferredoxin oxidoreductase [Pseudoramibacter alactolyticus
           ATCC 23263]
 gi|315622430|gb|EFV02387.1| pyruvate-ferredoxin oxidoreductase [Pseudoramibacter alactolyticus
           ATCC 23263]
          Length = 1175

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 31/93 (33%), Gaps = 18/93 (19%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTRRTV----------- 94
            A+        +CI C  C  +CP  AI     T E       G                
Sbjct: 684 IAVNVPRWDISKCIQCNQCSFVCPHAAIRPVLLTEEEKAAAPAGFETKKAMGKPLAGLEY 743

Query: 95  RYDIDMIKCIYCGLCQEAC--PVDAIVEGPNFE 125
           R  +D++ C  CG C +AC     A+   P  E
Sbjct: 744 RIQVDVMDCTGCGNCVDACIAKEKALSLVPIHE 776


>gi|170749599|ref|YP_001755859.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylobacterium radiotolerans JCM 2831]
 gi|170656121|gb|ACB25176.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium radiotolerans JCM 2831]
          Length = 675

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 38/115 (33%), Gaps = 14/115 (12%)

Query: 16  FVGAFFLCLRYFFKAKTTI-NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP 74
           F+G     LR+ F+   +    P ++   +                  C  C  C + CP
Sbjct: 480 FLGNKREVLRHTFRGMHSAAPAPVDRVPLAAGAP----FGGLDFRVADCTLCLACVSACP 535

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
             A++  +                +   C+ CGLC   CP D I   P  +FA  
Sbjct: 536 THALSDSAEQPLLG---------FEESLCVQCGLCAATCPEDVITLRPQVDFAAW 581



 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 16/54 (29%), Gaps = 11/54 (20%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
             C  C  +CP  AI                   ID   C  CG C   CP  A
Sbjct: 281 TGCTRCLDVCPTGAIAPAGD-----------TVRIDPYVCAGCGSCAALCPTGA 323


>gi|154484478|ref|ZP_02026926.1| hypothetical protein EUBVEN_02192 [Eubacterium ventriosum ATCC
           27560]
 gi|149734326|gb|EDM50243.1| hypothetical protein EUBVEN_02192 [Eubacterium ventriosum ATCC
           27560]
          Length = 101

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 10/62 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            EE+C  C LC  +CP  AI            +   R  ID   C  CG+C +ACP  AI
Sbjct: 46  DEEKCKQCLLCVPVCPDSAI----------PVKEYKRQTIDYDHCKGCGICVKACPFGAI 95

Query: 119 VE 120
             
Sbjct: 96  KM 97


>gi|42526180|ref|NP_971278.1| pyruvate ferredoxin/flavodoxin oxidoreductase family protein
           [Treponema denticola ATCC 35405]
 gi|41816292|gb|AAS11159.1| pyruvate ferredoxin/flavodoxin oxidoreductase family protein
           [Treponema denticola ATCC 35405]
          Length = 1186

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 27/136 (19%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP-----RCH 87
           T    +EK + +                + CI C  C  +CP   I +++       +  
Sbjct: 675 TATTQYEKRAIAEHIP--------IWKSDICIQCGQCVMVCPHACIRMKAYDSSLLAKAP 726

Query: 88  DGTRRT-----------VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
            G +                 +    C  CGLC + CP  +     N E      +    
Sbjct: 727 QGFKSCDYKGKEFEGAKFTIQVSSEDCTGCGLCVQQCPAKS---KENPEIKAINMENFVE 783

Query: 137 DKERLLNNGDRWESEI 152
            +++ + N + + ++I
Sbjct: 784 HRKQEVANWNFFFNDI 799


>gi|330835620|ref|YP_004410348.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Metallosphaera cuprina Ar-4]
 gi|329567759|gb|AEB95864.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Metallosphaera cuprina Ar-4]
          Length = 405

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 12/63 (19%)

Query: 63  CIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           C  C    C + CPA AIT +          +     I+  KCI CG CQ ACP +A+  
Sbjct: 59  CNHCDNPVCLSSCPANAITKD----------KNGIVKINSEKCIGCGYCQWACPYEALHF 108

Query: 121 GPN 123
             +
Sbjct: 109 SKD 111



 Score = 40.5 bits (93), Expect = 0.085,   Method: Composition-based stats.
 Identities = 23/76 (30%), Positives = 28/76 (36%), Gaps = 22/76 (28%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC------GL--CQ 110
             E+CI C  C+  CP +A+                  D  M KC  C      GL  C 
Sbjct: 87  NSEKCIGCGYCQWACPYEALHFSK--------------DGTMSKCHLCFDRLGKGLPYCV 132

Query: 111 EACPVDAIVEGPNFEF 126
           EACP  A+  G   E 
Sbjct: 133 EACPTGALTFGWLKEP 148


>gi|325473515|gb|EGC76708.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Treponema denticola
           F0402]
          Length = 1186

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 27/136 (19%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP-----RCH 87
           T    +EK + +                + CI C  C  +CP   I +++       +  
Sbjct: 675 TATTQYEKRAIAEHIP--------IWKSDICIQCGQCVMVCPHACIRMKAYDSSLLAKAP 726

Query: 88  DGTRRT-----------VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
            G +                 +    C  CGLC + CP  +     N E      +    
Sbjct: 727 QGFKSCDYKGKEFEGAKFTIQVSSEDCTGCGLCVQQCPAKS---KENPEIKAINMENFVE 783

Query: 137 DKERLLNNGDRWESEI 152
            +++ + N + + ++I
Sbjct: 784 HRKQEVANWNFFFNDI 799


>gi|319940779|ref|ZP_08015118.1| hypothetical protein HMPREF9464_00337 [Sutterella wadsworthensis
           3_1_45B]
 gi|319805661|gb|EFW02442.1| hypothetical protein HMPREF9464_00337 [Sutterella wadsworthensis
           3_1_45B]
          Length = 214

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 1/57 (1%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           RCI C  C ++C   A    +         RT      +  C +C  C E CP  AI
Sbjct: 62  RCIRCDRCRSVCHTNA-VGIAHFETGFLAMRTPVMTFHLGHCDFCKKCAEVCPTGAI 117



 Score = 34.3 bits (77), Expect = 5.1,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 1/59 (1%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            C  CK C  +CP  AI   +      G        I +     C  C EACP DA+  
Sbjct: 101 HCDFCKKCAEVCPTGAIEDFAPETVRIGIAVVTESCIALRTGA-CTKCYEACPYDAVTL 158


>gi|307719055|ref|YP_003874587.1| hypothetical protein STHERM_c13740 [Spirochaeta thermophila DSM
           6192]
 gi|306532780|gb|ADN02314.1| hypothetical protein STHERM_c13740 [Spirochaeta thermophila DSM
           6192]
          Length = 583

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 59  GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115
              +C+ C  C  +C   Q +         DGTR     DI +    CI CG C   CPV
Sbjct: 144 DPSKCVKCGRCVNVCQGMQNVWALEFLGRGDGTRIAPAGDIALNDSPCIKCGQCSAHCPV 203

Query: 116 DAIVEGPN 123
            AI E  +
Sbjct: 204 GAIYEKDD 211


>gi|284049169|ref|YP_003399508.1| Fe-S cluster domain protein [Acidaminococcus fermentans DSM 20731]
 gi|283953390|gb|ADB48193.1| Fe-S cluster domain protein [Acidaminococcus fermentans DSM 20731]
          Length = 433

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 24/71 (33%), Gaps = 11/71 (15%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
             E  L         C  C +C   C  QAI + +G              I   +CI CG
Sbjct: 1   MSEAYLNSVRVNTRHCTGCLICVKDCLVQAIRVRNGKAV-----------ILSDRCIDCG 49

Query: 108 LCQEACPVDAI 118
            C   CP  A+
Sbjct: 50  ECIRCCPTRAM 60


>gi|258649199|ref|ZP_05736668.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Prevotella
           tannerae ATCC 51259]
 gi|260850463|gb|EEX70332.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Prevotella
           tannerae ATCC 51259]
          Length = 1186

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 28/94 (29%), Gaps = 20/94 (21%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIE---------------SGPRCHDGTRR 92
           RG  A        E CI C  C  +CP   I                             
Sbjct: 676 RGVAAFVPEWI-PENCIQCNKCAFVCPHATIRPFVMDENETVGFKGESLEIKAPATMKGM 734

Query: 93  TVRYDIDMIKCIYCGLCQEACP----VDAIVEGP 122
                ++++ C+ CG C + CP      A++  P
Sbjct: 735 RFVQQVNVLDCLGCGNCADVCPGKKGEKALIMKP 768


>gi|218551404|ref|YP_002385196.1| ferredoxin [Escherichia fergusonii ATCC 35469]
 gi|218358946|emb|CAQ91606.1| putative ferredoxin [Escherichia fergusonii ATCC 35469]
          Length = 224

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 37/114 (32%), Gaps = 9/114 (7%)

Query: 12  FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71
           + +E +   ++  R  F+A  +   P              AL        +C  C LC  
Sbjct: 55  YYQELMSHRYVSRRGLFRAFVSAARPVTTPILPVHSLPPGAL-PDAQFRVQCTQCDLCIN 113

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
            CP   +                +  I+   C  CGLC  AC  +A+     F+
Sbjct: 114 ACPMGILNRHEDGYP--------QLVIEFASCDGCGLCIAACSTEALRPQARFD 159


>gi|254466887|ref|ZP_05080298.1| dihydroorotate dehydrogenase family protein [Rhodobacterales
           bacterium Y4I]
 gi|206687795|gb|EDZ48277.1| dihydroorotate dehydrogenase family protein [Rhodobacterales
           bacterium Y4I]
          Length = 434

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 8/76 (10%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI C  C A C       E              + +   +C+ 
Sbjct: 330 QYLDLNYVTKAKISQDDCIKCGRCYAAC-------EDTSHQAIAMSEDRVFTVKDDECVA 382

Query: 106 CGLCQEACPVD-AIVE 120
           C LC   CPV+  I  
Sbjct: 383 CNLCVNVCPVEGCITM 398


>gi|197248415|ref|YP_002147480.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197212118|gb|ACH49515.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
          Length = 287

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 22/73 (30%), Gaps = 11/73 (15%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            + C  C  C   CP   I  +                I   +C  CG C   CP  A+ 
Sbjct: 190 PQECRMCGACWRSCPENVIQFDDN-----------TLTIAAARCTGCGGCAAVCPHQALR 238

Query: 120 EGPNFEFATETRQ 132
              + E A+    
Sbjct: 239 LRFDVEPASTRHS 251



 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 11/50 (22%)

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  +CPAQA ++  G              ID  +CI CG C   CPVDAI
Sbjct: 29  CADVCPAQAFSLAQGQVS-----------IDTTRCIACGDCLFVCPVDAI 67


>gi|197124675|ref|YP_002136626.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
 gi|196174524|gb|ACG75497.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
          Length = 632

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 9/59 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
               C  C +C A CP  A+ I+             +  +  + C  CG C  ACP  A
Sbjct: 561 DAALCGGCGMCVAACPFGAMVIDGAD---------GKARVLAVDCRGCGTCAAACPTGA 610



 Score = 35.8 bits (81), Expect = 1.7,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 11/68 (16%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRY----------DIDMIKCI-YCGLCQEA 112
           +AC  C  +C A      + P      R+ +             +D   C+  C  C +A
Sbjct: 243 VACLGCAEVCGAACPVEVADPSGGGPARKAIHLPYPGCLPHAAVVDRAACLPGCAACADA 302

Query: 113 CPVDAIVE 120
           CP  A+  
Sbjct: 303 CPFGAVRL 310



 Score = 34.3 bits (77), Expect = 5.3,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 97  DIDMIKCIYCGLCQEACPVDAI 118
           ++D   C  CG+C  ACP  A+
Sbjct: 559 EVDAALCGGCGMCVAACPFGAM 580


>gi|149927499|ref|ZP_01915753.1| cyclic nucleotide-binding domain (cNMP-BD) protein [Limnobacter sp.
           MED105]
 gi|149823772|gb|EDM82998.1| cyclic nucleotide-binding domain (cNMP-BD) protein [Limnobacter sp.
           MED105]
          Length = 820

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 23/80 (28%), Gaps = 13/80 (16%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACK--LCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100
                R      +  +    C  C+   C   CP  AI                   +  
Sbjct: 674 IPRLDRDAGPTFQNIHLAHSCRHCEQPHCMKDCPPDAIRRNEKGEV-----------MIA 722

Query: 101 IKCIYCGLCQEACPVDAIVE 120
             CI CG C + CP +AI  
Sbjct: 723 DTCIGCGNCAKNCPYNAIEL 742



 Score = 37.0 bits (84), Expect = 0.82,   Method: Composition-based stats.
 Identities = 17/81 (20%), Positives = 20/81 (24%), Gaps = 24/81 (29%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRC------------------HDGTRRTVRYDIDMIK 102
           + CI C  C   CP  AI +   P                        +          K
Sbjct: 723 DTCIGCGNCAKNCPYNAIELRVKPPPRKTGLLSWLLFGSGGPLGERPVKYDANSIKKAYK 782

Query: 103 CIYCG------LCQEACPVDA 117
           C  C        C  ACP  A
Sbjct: 783 CDLCHGKDGGPACVRACPTGA 803


>gi|150021446|ref|YP_001306800.1| electron transport complex, RnfABCDGE type, C subunit [Thermosipho
           melanesiensis BI429]
 gi|149793967|gb|ABR31415.1| electron transport complex, RnfABCDGE type, C subunit [Thermosipho
           melanesiensis BI429]
          Length = 438

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 20/74 (27%), Gaps = 1/74 (1%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100
                   G   +         CI C  C  +CP                R      I +
Sbjct: 342 TPLVKGNNGITTIIPKEQKSTFCIRCSYCVNVCPMGLQPYLLDL-LGKKKRYDEAAKIGL 400

Query: 101 IKCIYCGLCQEACP 114
           + CI CG C   CP
Sbjct: 401 LDCIECGSCTYICP 414


>gi|124268894|ref|YP_001022898.1| NAD-dependent formate dehydrogenase subunit alpha [Methylibium
           petroleiphilum PM1]
 gi|124261669|gb|ABM96663.1| NAD-dependent formate dehydrogenase alpha subunit [Methylibium
           petroleiphilum PM1]
          Length = 977

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 29/94 (30%), Gaps = 11/94 (11%)

Query: 38  FEKGSTSPRFRGEHALR--------RYPNGEERCIACKLCEAICPAQAITI---ESGPRC 86
             +     ++ G H L+         +     +CI C  C   C     T     SG   
Sbjct: 139 EVRYGVGDQYGGAHHLKSAKDESNPYFTYDPSKCIVCNRCVRACEETQGTFALTISGRGF 198

Query: 87  HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
                          +C+ CG C +ACP   + E
Sbjct: 199 ESRVSAGQDQPFMESECVSCGACVQACPTATLQE 232


>gi|313905900|ref|ZP_07839256.1| nitrite and sulphite reductase 4Fe-4S region [Eubacterium
           cellulosolvens 6]
 gi|313469241|gb|EFR64587.1| nitrite and sulphite reductase 4Fe-4S region [Eubacterium
           cellulosolvens 6]
          Length = 288

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 11/57 (19%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           ++CI C LC  +C   A++I  G              +D  KC  CG C  +CP DA
Sbjct: 163 DKCINCGLCAKVCRENAVSITDGKV-----------TVDQDKCNNCGRCVFSCPTDA 208



 Score = 35.1 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 17/45 (37%)

Query: 78  ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                      G +  VR +    KCI CGLC + C  +A+    
Sbjct: 140 NNCLKAEENDIGIKGGVRVNWLEDKCINCGLCAKVCRENAVSITD 184


>gi|310658522|ref|YP_003936243.1| iron-sulfur protein [Clostridium sticklandii DSM 519]
 gi|308825300|emb|CBH21338.1| putative iron-sulfur protein [Clostridium sticklandii]
          Length = 418

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 7/69 (10%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
               N  + CI+CK C ++CP     I              +  ++   C+ CG+CQ  C
Sbjct: 281 NFIANQLDNCISCKKCVSVCPVGCFEI-------KVFNDKDKVVLNSELCLGCGVCQRVC 333

Query: 114 PVDAIVEGP 122
            ++AI    
Sbjct: 334 SINAIEMSK 342


>gi|297620126|ref|YP_003708231.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus voltae A3]
 gi|297379103|gb|ADI37258.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           voltae A3]
          Length = 166

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 11/74 (14%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
           ++         E+C+ C  C  +CP  AI +                 +   KC++CG C
Sbjct: 28  QYIKSYIDIDNEKCVFCNKCIEVCPVDAIDLNFPEN-----------TVITEKCVHCGTC 76

Query: 110 QEACPVDAIVEGPN 123
            + CPV AI     
Sbjct: 77  IDVCPVKAISLTQI 90



 Score = 41.6 bits (96), Expect = 0.035,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 10/69 (14%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
               +      ++CI C +C   CP  AI+IE                I   KC+ CG C
Sbjct: 105 HEKHKLLNYDAKKCIMCNICLKNCPFDAISIEKNQNK----------MIFTEKCVLCGHC 154

Query: 110 QEACPVDAI 118
            + CP +AI
Sbjct: 155 GQICPANAI 163



 Score = 40.1 bits (92), Expect = 0.10,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 8/71 (11%)

Query: 61  ERCIACKLCEAICPAQAIT--------IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           E+C+ C  C  +CP +AI+          +  +      +    + D  KCI C +C + 
Sbjct: 68  EKCVHCGTCIDVCPVKAISLTQIKLKIKNNELKIKKSHEKHKLLNYDAKKCIMCNICLKN 127

Query: 113 CPVDAIVEGPN 123
           CP DAI    N
Sbjct: 128 CPFDAISIEKN 138


>gi|284162362|ref|YP_003400985.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Archaeoglobus
           profundus DSM 5631]
 gi|284012359|gb|ADB58312.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Archaeoglobus
           profundus DSM 5631]
          Length = 420

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 23/68 (33%), Gaps = 7/68 (10%)

Query: 60  EERCIACKLCEAICPAQ-------AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
            E C AC  CE +CP +        +                 Y ID   C  CG C + 
Sbjct: 113 NENCTACGECEKVCPVERPNDFDFGMDKTKAIYLPHDMAFPPIYVIDPDVCNKCGECVKV 172

Query: 113 CPVDAIVE 120
           C  DAI  
Sbjct: 173 CKYDAINL 180


>gi|282162714|ref|YP_003355099.1| hypothetical protein MCP_0044 [Methanocella paludicola SANAE]
 gi|282155028|dbj|BAI60116.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 268

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 24/69 (34%), Gaps = 12/69 (17%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            + CI C  CE  C   AI +  G     G             C  CG C + CP  AIV
Sbjct: 200 RDSCIGCGKCERACFLSAIKVVDGRAAIGG------------DCRGCGRCADVCPSKAIV 247

Query: 120 EGPNFEFAT 128
              +   A 
Sbjct: 248 VSVDDRMAE 256


>gi|261601243|gb|ACX90846.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Sulfolobus solfataricus 98/2]
          Length = 87

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 26/75 (34%), Gaps = 11/75 (14%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G   + +      +CI CK C   CP   I   +G              +D   C  CG+
Sbjct: 23  GAWRIVKPVVDYSKCIGCKACFMFCPESTIVPSNGKV-----------RVDYEYCKGCGV 71

Query: 109 CQEACPVDAIVEGPN 123
           C   CPV AI     
Sbjct: 72  CANVCPVKAISMVSE 86


>gi|239787506|emb|CAX83976.1| Electron transport complex protein [uncultured bacterium]
          Length = 490

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 23/68 (33%), Gaps = 2/68 (2%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             CI C  C  ICP   +            +      I ++ C+ CG C   CP   I  
Sbjct: 367 SPCIRCGTCVTICPCG-LVPVEMASFIRKEKLEEAAKIGVMDCVSCGSCSYICPSH-IPL 424

Query: 121 GPNFEFAT 128
              F +A 
Sbjct: 425 VHYFNYAK 432



 Score = 35.5 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 10/41 (24%)

Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLN 143
           CI CG C   CP   +      E A+  R      KE+L  
Sbjct: 369 CIRCGTCVTICPCGLVPV----EMASFIR------KEKLEE 399


>gi|255100494|ref|ZP_05329471.1| putative iron-sulfur protein [Clostridium difficile QCD-63q42]
          Length = 424

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 7/69 (10%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               E C+ C  C   CP  AI+                  ID  +C+ CG+C   C  +
Sbjct: 289 NINHENCVKCGKCITACPIDAISKVKEDGKEY-------IKIDEDRCLGCGVCVRNCHKN 341

Query: 117 AIVEGPNFE 125
           +I+     E
Sbjct: 342 SIMLLKRDE 350


>gi|218782788|ref|YP_002434106.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218764172|gb|ACL06638.1| MvH Hase/Heterodisulfide reductase, subunit A-like protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 1021

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 29/82 (35%), Gaps = 12/82 (14%)

Query: 57  PNGEERCIACKLCEAIC-------PAQAITIESGPRCHDGTRRTVRYDIDMIKCIY---- 105
               ++CIAC LC   C         + +          G    ++Y ID   CIY    
Sbjct: 104 YVDMDKCIACGLCAEKCPRPVADEFNEGVNNRKAIYIKYGQSVPLKYAIDPNACIYLTRG 163

Query: 106 -CGLCQEACPVDAIVEGPNFEF 126
            C  C++ CP  AI      E 
Sbjct: 164 KCRACEKFCPTGAINFEDKAEI 185



 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 2/55 (3%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           E C  C LC  +CP +AI ++          R ++ D     C  CG+C   CP 
Sbjct: 940 EHCDGCALCVDVCPYRAIRLQESTGEDGRMHRMIQVD--PALCKGCGVCAATCPK 992



 Score = 35.5 bits (80), Expect = 2.3,   Method: Composition-based stats.
 Identities = 8/21 (38%), Positives = 9/21 (42%)

Query: 101 IKCIYCGLCQEACPVDAIVEG 121
             C  C LC + CP  AI   
Sbjct: 940 EHCDGCALCVDVCPYRAIRLQ 960


>gi|242278804|ref|YP_002990933.1| hydrogenase, Fe-only [Desulfovibrio salexigens DSM 2638]
 gi|242121698|gb|ACS79394.1| hydrogenase, Fe-only [Desulfovibrio salexigens DSM 2638]
          Length = 444

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 8/68 (11%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           R     E +C  C  CE  C + AI   +           +   +D + C+ CG C   C
Sbjct: 47  RFVRVDESKCEGCGACEEYCASGAIQSINDE--------GIHRIVDPVACMNCGQCLTNC 98

Query: 114 PVDAIVEG 121
           P  AI EG
Sbjct: 99  PYGAIYEG 106


>gi|161338490|emb|CAO03077.1| 1-methyl alkyl succinate synthase activase [Azoarcus sp. HxN1]
          Length = 325

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 1/59 (1%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           C+ C  C  ICP  A   +  P        +  Y ID  KC  C  C  ACP  A+   
Sbjct: 57  CMQCGTCARICPRGAA-NKPVPVEAAQAEGSTYYKIDHDKCDACMECVSACPYSAMEIT 114


>gi|20807184|ref|NP_622355.1| ferredoxin 2 [Thermoanaerobacter tengcongensis MB4]
 gi|20515685|gb|AAM23959.1| Ferredoxin 2 [Thermoanaerobacter tengcongensis MB4]
          Length = 581

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 30/88 (34%), Gaps = 17/88 (19%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G   L      +  C  C  C   CP +AI +  G             ++    CIYCG 
Sbjct: 3   GGLILDVISVSKANCRNCYRCVRHCPVKAIKVVGGQA-----------EVVDSLCIYCGR 51

Query: 109 CQEACPVDA------IVEGPNFEFATET 130
           C   CP +A      +     F +A E 
Sbjct: 52  CVIECPQNAKKVRNDLHAVKEFIYAGEK 79


>gi|325294342|ref|YP_004280856.1| hydrogenase, Fe-only [Desulfurobacterium thermolithotrophum DSM
           11699]
 gi|325064790|gb|ADY72797.1| hydrogenase, Fe-only [Desulfurobacterium thermolithotrophum DSM
           11699]
          Length = 450

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 29/83 (34%), Gaps = 11/83 (13%)

Query: 47  FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
           +R           +++C+ C  C+  CPA A           G       DI   +CI C
Sbjct: 28  YRPGELKGIVRINQDKCVGCDTCKGHCPADA--------IKGGLGVAHSVDIM--RCINC 77

Query: 107 GLCQEACPVDAI-VEGPNFEFAT 128
           G C   CP  AI       E A 
Sbjct: 78  GQCLVNCPFGAIEQMSFVDEVAK 100


>gi|322417571|ref|YP_004196794.1| FAD dependent oxidoreductase [Geobacter sp. M18]
 gi|322420729|ref|YP_004199952.1| FAD dependent oxidoreductase [Geobacter sp. M18]
 gi|320123958|gb|ADW11518.1| FAD dependent oxidoreductase [Geobacter sp. M18]
 gi|320127116|gb|ADW14676.1| FAD dependent oxidoreductase [Geobacter sp. M18]
          Length = 665

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 1/62 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ C+ C  C+ +C   AI  E   R   G        ++   C  CG CQ  CP  +I
Sbjct: 590 NEKYCVGCFACKKVCAYGAIE-EKEIRDRQGNLVKKVAYVNPGVCGGCGTCQATCPSKSI 648

Query: 119 VE 120
             
Sbjct: 649 EL 650


>gi|269468926|gb|EEZ80510.1| electron transport complex protein RnfB [uncultured SUP05 cluster
           bacterium]
          Length = 147

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 10/61 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ CI C LC   CP  A    S           V   +   +C  C LC   CPVD I
Sbjct: 76  DEQICIGCTLCIQACPVDAFVGASK----------VMTTVIADECTGCDLCIPVCPVDCI 125

Query: 119 V 119
            
Sbjct: 126 H 126


>gi|255100556|ref|ZP_05329533.1| putative iron-sulfur protein [Clostridium difficile QCD-63q42]
          Length = 382

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 11/67 (16%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            + CI C  C+  CPA  I I +               ID+ KCI C  C E CP  AI 
Sbjct: 323 FQDCIKCGKCKEACPASTIEIGTKGAI-----------IDLSKCIRCYCCHELCPKKAID 371

Query: 120 EGPNFEF 126
              NF F
Sbjct: 372 VKRNFVF 378


>gi|225572996|ref|ZP_03781751.1| hypothetical protein RUMHYD_01187 [Blautia hydrogenotrophica DSM
           10507]
 gi|225039647|gb|EEG49893.1| hypothetical protein RUMHYD_01187 [Blautia hydrogenotrophica DSM
           10507]
          Length = 653

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 1/79 (1%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
           + P           G  A+         CI C  C  +CP +   +       +   + +
Sbjct: 555 DLPNVNVPIMKGSNGIIAIETDHTETLECIKCGRCVDVCPMELSPLYFAKYADEQNWQGM 614

Query: 95  RYDIDMIKCIYCGLCQEAC 113
           + D +++ CI C  C+  C
Sbjct: 615 K-DKNVMDCIECRCCEYIC 632


>gi|74317665|ref|YP_315405.1| heterodisulfide reductase subunit A [Thiobacillus denitrificans
           ATCC 25259]
 gi|74057160|gb|AAZ97600.1| heterodisulfide reductase, subunit A [Thiobacillus denitrificans
           ATCC 25259]
          Length = 752

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 22/70 (31%), Gaps = 10/70 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L       E C  CK C   CP  AI  +                 +  +C  CG C  A
Sbjct: 536 LSFPKVRLEGCTQCKRCTVECPFGAIDEDEKRFPVF----------NESRCRRCGTCMGA 585

Query: 113 CPVDAIVEGP 122
           CPV  I    
Sbjct: 586 CPVRVISFEN 595


>gi|50084303|ref|YP_045813.1| putative iron-sulfur protein [Acinetobacter sp. ADP1]
 gi|49530279|emb|CAG67991.1| conserved hypothetical protein; putative iron-sulfur protein
           [Acinetobacter sp. ADP1]
          Length = 250

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 10/88 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E+     +  G     +    E+ CI C  C + CP  AI               + + +
Sbjct: 54  EQSIWPIQSDGRPQRMKAIIREDECIGCTKCISACPVDAIIGSGK----------LMHTV 103

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEF 126
               C  C LC   CPVD I    + E 
Sbjct: 104 LTDLCTGCELCIPPCPVDCIDLVEDREP 131


>gi|327401152|ref|YP_004341991.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
 gi|327316660|gb|AEA47276.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
          Length = 372

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 4/59 (6%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+C  C  C  ICP  AI+        +       Y ID  KCI C  C E C   AI
Sbjct: 199 NEKCDGCGRCTEICPINAISCHVAGDTGN----RTIYTIDRNKCIGCTGCYEVCRKRAI 253



 Score = 34.3 bits (77), Expect = 5.0,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 35/104 (33%), Gaps = 13/104 (12%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTR-RTVRYDIDM-------IKCIYCGLCQEACPV 115
           + C     +   QA    S      G   +  ++DI          KC  CG C E CP+
Sbjct: 156 VVCATHFKL-HMQAGIGGSIKNVGVGCVAKPSKFDIHCPEKPVINEKCDGCGRCTEICPI 214

Query: 116 DAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
           +AI        A +T     Y  +R    G     E+ R    D
Sbjct: 215 NAISCH----VAGDTGNRTIYTIDRNKCIGCTGCYEVCRKRAID 254


>gi|312126778|ref|YP_003991652.1| 4fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Caldicellulosiruptor hydrothermalis 108]
 gi|311776797|gb|ADQ06283.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Caldicellulosiruptor hydrothermalis 108]
          Length = 373

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 10/57 (17%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
            +C+ C +C   C   AIT+    +            ID  KC+ CG C   C   A
Sbjct: 194 SKCVGCGMCVKSCAQLAITLNEKKKAV----------IDYEKCVGCGQCVAVCQFGA 240



 Score = 34.3 bits (77), Expect = 5.7,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 4/60 (6%)

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVR----YDIDMIKCIYCGLCQEACPVDAIVE 120
             K  E      AI          G +  +       I   KC+ CG+C ++C   AI  
Sbjct: 154 HFKGHEMTGFGGAIKNIGMGSGSRGGKLFMHSSSKPVIKTSKCVGCGMCVKSCAQLAITL 213


>gi|302387715|ref|YP_003823537.1| Fe-S cluster domain protein [Clostridium saccharolyticum WM1]
 gi|302198343|gb|ADL05914.1| Fe-S cluster domain protein [Clostridium saccharolyticum WM1]
          Length = 470

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 27/77 (35%), Gaps = 18/77 (23%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            EE C+ C  C   CP QAI + +G              I+   CI CG C   CP  A 
Sbjct: 11  DEELCMGCINCIKRCPTQAIRVRNGKA-----------QINSKFCIDCGECIRVCPHHAK 59

Query: 119 VEG-------PNFEFAT 128
                       +E+  
Sbjct: 60  HATYDKLEVLKQYEYTV 76


>gi|297543667|ref|YP_003675969.1| RnfABCDGE type electron transport complex subunit B
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|296841442|gb|ADH59958.1| electron transport complex, RnfABCDGE type, B subunit
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 271

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/90 (23%), Positives = 31/90 (34%), Gaps = 11/90 (12%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
                  P+ +         +            CI C++C   CP +AIT E+       
Sbjct: 182 KGIIELVPYNQEVIIKCKSNDPGKVVRGYCSVGCIGCQICVRSCPEKAITFENYLA---- 237

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
                   I+  KC  CG+C E CP  +I 
Sbjct: 238 -------KINYEKCTNCGICAEKCPTGSIF 260



 Score = 40.9 bits (94), Expect = 0.062,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 11/66 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            +    C+ C  C  +C   AI I +G              ID  KC+ C  C E CP  
Sbjct: 135 KSCPYGCLGCGTCVDVCDYGAIQIINGVAV-----------IDKEKCVACKACIEVCPKG 183

Query: 117 AIVEGP 122
            I   P
Sbjct: 184 IIELVP 189



 Score = 37.4 bits (85), Expect = 0.71,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCIYCGLCQEAC 113
            +E+C+ACK C  +CP   I +    +      +      V      + CI C +C  +C
Sbjct: 166 DKEKCVACKACIEVCPKGIIELVPYNQEVIIKCKSNDPGKVVRGYCSVGCIGCQICVRSC 225

Query: 114 PVDAIVEGP 122
           P  AI    
Sbjct: 226 PEKAITFEN 234


>gi|224543046|ref|ZP_03683585.1| hypothetical protein CATMIT_02246 [Catenibacterium mitsuokai DSM
           15897]
 gi|224524071|gb|EEF93176.1| hypothetical protein CATMIT_02246 [Catenibacterium mitsuokai DSM
           15897]
          Length = 1177

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 29/97 (29%), Gaps = 22/97 (22%)

Query: 51  HALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT--- 93
            A++     ++ CI C  C  +CP                A    +        +     
Sbjct: 676 IAIQVPKWEKDNCIQCNQCAMVCPHATIRPFLMTEEEIKNAPEDITNDVLKPIGKGVEGL 735

Query: 94  -VRYDIDMIKCIYCGLCQEACP----VDAIVEGPNFE 125
             R  +    C+ CGLC   CP      A+   P  E
Sbjct: 736 SFRIQVSPDNCVGCGLCAAICPGKRGEKALTMVPVKE 772


>gi|254176717|ref|ZP_04883374.1| formate dehydrogenase, alpha subunit [Burkholderia mallei ATCC
           10399]
 gi|160697758|gb|EDP87728.1| formate dehydrogenase, alpha subunit [Burkholderia mallei ATCC
           10399]
          Length = 984

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 25/85 (29%), Gaps = 10/85 (11%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     +          +        +C+ CG C  
Sbjct: 187 YFSYDPSKCIVCNRCVRACEETQGTFALTIASRGFESWVAASAGEAFMDSECVSCGACVA 246

Query: 112 ACPVDAIVE-------GPNFEFATE 129
           ACP   ++E        P  E  T 
Sbjct: 247 ACPTATLIEKSVARLGQPEHEIVTT 271


>gi|153003113|ref|YP_001377438.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing
           protein [Anaeromyxobacter sp. Fw109-5]
 gi|152026686|gb|ABS24454.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Anaeromyxobacter sp. Fw109-5]
          Length = 1203

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 26/100 (26%), Gaps = 19/100 (19%)

Query: 31  KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---------- 80
                +P     TS   +   AL         CI C  C  ICP  AI            
Sbjct: 668 PVDGTWP---TGTSKWEKRSIALELPVWEPSLCIQCNKCALICPHAAIRPKFFAPEALAA 724

Query: 81  ------ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                     +  D         +    C  C LC E CP
Sbjct: 725 APQGFVTMDFKSPDVKGNKYALQVSPDDCTGCTLCVEICP 764


>gi|118445132|ref|YP_879222.1| ferredoxin [Clostridium novyi NT]
 gi|253680812|ref|ZP_04861615.1| ferredoxin [Clostridium botulinum D str. 1873]
 gi|331270643|ref|YP_004397135.1| 4Fe-4S ferredoxin, iron-sulfur binding domain-containing protein
           [Clostridium botulinum BKT015925]
 gi|118135588|gb|ABK62632.1| ferredoxin [Clostridium novyi NT]
 gi|253562661|gb|EES92107.1| ferredoxin [Clostridium botulinum D str. 1873]
 gi|329127193|gb|AEB77138.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Clostridium
           botulinum BKT015925]
          Length = 57

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 11/58 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C++C  C + CP  AI+               +++ID   CI CG C   CPV AI
Sbjct: 7   DSCVSCGSCASECPVGAISQGD-----------SQFEIDANSCIDCGNCANVCPVGAI 53


>gi|15920514|ref|NP_376183.1| putative ATPase RIL [Sulfolobus tokodaii str. 7]
 gi|15621297|dbj|BAB65292.1| 603aa long hypothetical RNase L inhibitor [Sulfolobus tokodaii str.
           7]
          Length = 603

 Score = 44.7 bits (104), Expect = 0.004,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 21/75 (28%), Gaps = 5/75 (6%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
                +       ++C     C   CP                    +  I    CI CG
Sbjct: 1   MRVAVINYDFCKPDKCNL--ECITFCPIN---RSGSKAIELSDLVKGKPIIYEETCIGCG 55

Query: 108 LCQEACPVDAIVEGP 122
           +C + CP +AI    
Sbjct: 56  ICIKKCPFEAIDIVN 70


>gi|319794270|ref|YP_004155910.1| 4fe-4S ferredoxin iron-sulfur binding domain protein [Variovorax
           paradoxus EPS]
 gi|315596733|gb|ADU37799.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Variovorax
           paradoxus EPS]
          Length = 692

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 9/58 (15%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           + C  C  +C A AI  +         ++  R  ++   C+ CG C   CP  A+   
Sbjct: 308 VGCNACVEVCSAHAIASD---------KQRQRIVVNPNLCVGCGACTTVCPTGALGYT 356



 Score = 42.4 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 24/121 (19%), Positives = 44/121 (36%), Gaps = 10/121 (8%)

Query: 20  FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79
             + L +   A   +  P +         G   L      +E+C  C  C + CP+ A+ 
Sbjct: 521 LEMALDHLMGAAPALQAPADAPLAFGLPPGSP-LGAIAVDKEKCTLCLACVSACPSGALL 579

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139
                       +          C+ CGLC+  CP DA+   P    + E +Q++  ++ 
Sbjct: 580 DSQTAPQLRFIEKN---------CVQCGLCEITCPEDAVSLVPRLLASPERKQQVLLNEA 630

Query: 140 R 140
           +
Sbjct: 631 K 631



 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 15/37 (40%)

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           R T    ID+  C  C  C  ACP  AI      + A
Sbjct: 173 RWTRDNAIDLDLCTRCNACIAACPEQAIGLDYQIDNA 209


>gi|312961803|ref|ZP_07776301.1| dihydroorotate dehydrogenase 1 [Pseudomonas fluorescens WH6]
 gi|311284062|gb|EFQ62645.1| dihydroorotate dehydrogenase 1 [Pseudomonas fluorescens WH6]
          Length = 424

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117
            +E CI C  C   C   +    +  +  DGT     Y++   +C+ C LCQ  CPV D 
Sbjct: 341 DQEACIGCGRCHIACEDTSHQAIASLKQADGTHA---YEVIDDECVGCNLCQITCPVADC 397

Query: 118 IVEGP 122
           I   P
Sbjct: 398 IEMVP 402


>gi|284047498|ref|YP_003397837.1| electron transport complex, RnfABCDGE type, C subunit
           [Acidaminococcus fermentans DSM 20731]
 gi|283951719|gb|ADB46522.1| electron transport complex, RnfABCDGE type, C subunit
           [Acidaminococcus fermentans DSM 20731]
          Length = 455

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/96 (21%), Positives = 30/96 (31%), Gaps = 6/96 (6%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93
           ++YP  KGS+        +        + C+ C  C   CP + +      +        
Sbjct: 344 LDYPITKGSSGLLIFNSKSPFAQYVEPDPCVHCARCVDACPMK-LEPTEIVQAVKKQNWD 402

Query: 94  VRYDIDMIKCIYCGLCQEACP-----VDAIVEGPNF 124
                    CI CG C   CP     V  I  G  F
Sbjct: 403 DAERFFCHACIECGSCAFVCPAHIPLVQYIRMGKQF 438


>gi|270296900|ref|ZP_06203099.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270272887|gb|EFA18750.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 300

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 27/81 (33%), Gaps = 8/81 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------DMIKCIYCGLCQ 110
            EE+C AC  C   CP   I I    +                       + CI CG C 
Sbjct: 169 DEEKCTACGACAKACPKSIIEIRPQGKKSRRIYVQCVNKDKGAVARKACTVACIGCGKCV 228

Query: 111 EACPVDAIVEGPNFEFATETR 131
           + CP +AI    N  +    +
Sbjct: 229 KVCPFEAITLENNLAYIDPNK 249



 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 9/65 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C+ C  C A C   AI +                ++D  KC  CG C +ACP   I
Sbjct: 138 CSYGCLGCGDCVAACQFDAIHMNPETGLP---------EVDEEKCTACGACAKACPKSII 188

Query: 119 VEGPN 123
              P 
Sbjct: 189 EIRPQ 193



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 11/60 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI C  C  +CP +AIT+E+               ID  KC  C  C+EACP + I
Sbjct: 217 CTVACIGCGKCVKVCPFEAITLENNLAY-----------IDPNKCKSCRKCEEACPQNTI 265


>gi|256828436|ref|YP_003157164.1| nitroreductase [Desulfomicrobium baculatum DSM 4028]
 gi|256577612|gb|ACU88748.1| nitroreductase [Desulfomicrobium baculatum DSM 4028]
          Length = 279

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 8/66 (12%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +  +   E RCI C  C A CP   I ++ G       R           CI C  C   
Sbjct: 1   MLDFIIDETRCIQCGECAADCPVSIIDMDGGLPRIPEHR--------ESYCIGCQHCLAV 52

Query: 113 CPVDAI 118
           CP  A+
Sbjct: 53  CPTAAL 58



 Score = 37.0 bits (84), Expect = 0.81,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 16/37 (43%)

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           + ID  +CI CG C   CPV  I          E R+
Sbjct: 4   FIIDETRCIQCGECAADCPVSIIDMDGGLPRIPEHRE 40


>gi|212634638|ref|YP_002311163.1| iron-sulfur cluster-binding protein [Shewanella piezotolerans WP3]
 gi|212556122|gb|ACJ28576.1| Iron-sulfur cluster-binding protein [Shewanella piezotolerans WP3]
          Length = 939

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 9/83 (10%)

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139
            +         +     D  + KC+ CG C++ CP  A+   P    AT  R+       
Sbjct: 519 NDDAKIHVKNIKPCPVVDDFVDKCLECGFCEKTCPTSALNLTPRQRIATL-RE-----IA 572

Query: 140 RLLNNGDRWESEIVRNIVTDSPY 162
           RL   GD        N+   + Y
Sbjct: 573 RLEQIGDHLA---ADNMRAAAKY 592



 Score = 34.3 bits (77), Expect = 5.9,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 18/76 (23%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPR-----------------CHDGTRRTVRYDID 99
            +  ++C+ C  CE  CP  A+ +    R                   D  R   +YD+ 
Sbjct: 536 DDFVDKCLECGFCEKTCPTSALNLTPRQRIATLREIARLEQIGDHLAADNMRAAAKYDVI 595

Query: 100 MIKCIYCGLCQEACPV 115
              C  C LC  ACPV
Sbjct: 596 -DTCAACQLCTIACPV 610


>gi|160935009|ref|ZP_02082395.1| hypothetical protein CLOLEP_03885 [Clostridium leptum DSM 753]
 gi|156866462|gb|EDO59834.1| hypothetical protein CLOLEP_03885 [Clostridium leptum DSM 753]
          Length = 431

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 11/59 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
            +++C+ C  C   CP +AI +  G              I   +CI CG C   CP  A
Sbjct: 4   DKDKCLGCTNCIKRCPTEAIRVREGKA-----------QIISERCIDCGECIRVCPHHA 51


>gi|150400534|ref|YP_001324300.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus aeolicus Nankai-3]
 gi|150013237|gb|ABR55688.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           aeolicus Nankai-3]
          Length = 383

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            + +C+ C +C   CP  AI +           +   + +   KCI C  C E CP   I
Sbjct: 157 DKNKCMYCSICAQTCPWNAIYVAGE--IPKKRHKEQIFTMAEDKCIGCMACAEICPGSMI 214



 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 1/71 (1%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI-DMIKCIYCGLCQEA 112
             +P  +  CI C++C  +CP + I+I +            +  I  +  C+ CG+C   
Sbjct: 82  NIFPYSKGHCILCEMCVEVCPIEIISIPTIIDKPKKEIIIPKDPIAVVDACVGCGVCVPV 141

Query: 113 CPVDAIVEGPN 123
           CPV+AI    +
Sbjct: 142 CPVEAINIEND 152



 Score = 38.2 bits (87), Expect = 0.40,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 3/63 (4%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C   CP  A+ I +    +   +   R +     C  CG C   CP+  +  
Sbjct: 293 KMCIVCGACVTACPTGALKIGT---INHNGKEYNRIEYGPHLCDKCGKCVSTCPMKTLRL 349

Query: 121 GPN 123
             +
Sbjct: 350 TDD 352



 Score = 35.5 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 13/78 (16%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+ C +C  +CP +AI IE+               +D  KC+YC +C + CP +AI    
Sbjct: 132 CVGCGVCVPVCPVEAINIENDRAV-----------VDKNKCMYCSICAQTCPWNAIYVAG 180

Query: 123 NFEFATETRQELYYDKER 140
             E   +  +E  +    
Sbjct: 181 --EIPKKRHKEQIFTMAE 196



 Score = 35.1 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 11/69 (15%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
              C  C  C  +CP +A++  +G               +   C  CG C  ACP     
Sbjct: 31  FNSCNLCMQCVKVCPTKALSEVAGKIS-----------YNSSICKKCGACATACPTKIKK 79

Query: 120 EGPNFEFAT 128
               F ++ 
Sbjct: 80  VDNIFPYSK 88


>gi|154248924|ref|YP_001409749.1| hydrogenase, Fe-only [Fervidobacterium nodosum Rt17-B1]
 gi|154152860|gb|ABS60092.1| hydrogenase, Fe-only [Fervidobacterium nodosum Rt17-B1]
          Length = 667

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 3/81 (3%)

Query: 59  GEERCIACKLCEAIC---PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
              +CI C  C   C      A    +          +    ++  +C++CG C   CP 
Sbjct: 140 DNAKCILCGDCVRACDEIQTVAAIDFAYRGFEAQVVPSFEEKLENTECVFCGQCVAYCPT 199

Query: 116 DAIVEGPNFEFATETRQELYY 136
            A+    + +   +  +E  Y
Sbjct: 200 GALAIRNDVDKVYKAIEEGKY 220


>gi|120609661|ref|YP_969339.1| dihydropyrimidine dehydrogenase [Acidovorax citrulli AAC00-1]
 gi|120588125|gb|ABM31565.1| dihydrouracil dehydrogenase (NAD+) / dihydropyrimidine
           dehydrogenase (NADP+) [Acidovorax citrulli AAC00-1]
          Length = 442

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 4/58 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            ++ CI C  C  +C   +    +  R     R    +++D  +C+ C LC   CPV 
Sbjct: 342 NQDACIQCGRCHVVCEDTSHQAITFTREGGVRR----FEVDESECVGCNLCVSICPVP 395


>gi|84514681|ref|ZP_01002045.1| dihydropyrimidine dehydrogenase [Loktanella vestfoldensis SKA53]
 gi|84511732|gb|EAQ08185.1| dihydropyrimidine dehydrogenase [Loktanella vestfoldensis SKA53]
          Length = 434

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 8/63 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117
            ++ CI C  C A C       E              + +   +C+ C LC + CPV + 
Sbjct: 343 NQDDCIKCGRCYAAC-------EDTSHQAIAMSADRTFTVIDAECVACNLCVDVCPVENC 395

Query: 118 IVE 120
           I  
Sbjct: 396 ITM 398


>gi|319936764|ref|ZP_08011177.1| hypothetical protein HMPREF9488_02011 [Coprobacillus sp. 29_1]
 gi|319808321|gb|EFW04886.1| hypothetical protein HMPREF9488_02011 [Coprobacillus sp. 29_1]
          Length = 249

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 34/98 (34%), Gaps = 12/98 (12%)

Query: 25  RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84
           + F ++  T+      G  +  F       +   G + CI+C  CE +CP   I +  G 
Sbjct: 152 KSFPESSITLKDKVSSGIVNDLFYPLFVQAKKFYGNDNCISCGKCEKLCPLSNIKLIEGQ 211

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                        I    C +C  C   CP  AI  G 
Sbjct: 212 P------------IWGNHCTHCMACISRCPKGAIEYGK 237


>gi|313673510|ref|YP_004051621.1| nad(p)-dependent nickel-iron dehydrogenase diaphorase component
           subunit hoxu [Calditerrivibrio nitroreducens DSM 19672]
 gi|312940266|gb|ADR19458.1| NAD(P)-dependent nickel-iron dehydrogenase diaphorase component
           subunit HoxU [Calditerrivibrio nitroreducens DSM 19672]
          Length = 231

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 38/105 (36%), Gaps = 4/105 (3%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC--PAQAITIESGPRCHDGTRRTVR 95
           FE  +  P+   + +  +Y     RC+ C  C  +C     A T +   R H     T  
Sbjct: 122 FEIKNQYPKCEVDLSHDKYGIDHNRCVLCARCVRVCAEIEGAHTKDISGRGHKARVITDF 181

Query: 96  YDID--MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
                    C  CG C + CP  A+ E      A + R  L Y K
Sbjct: 182 AKGWGEAETCTGCGKCVQVCPTGALFEKGKPVGAKKKRDFLNYLK 226


>gi|257791993|ref|YP_003182599.1| formate dehydrogenase, alpha subunit [Eggerthella lenta DSM 2243]
 gi|257475890|gb|ACV56210.1| formate dehydrogenase, alpha subunit [Eggerthella lenta DSM 2243]
          Length = 903

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 28/90 (31%), Gaps = 5/90 (5%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93
           +  PFE        R E+    Y      CI C+ C   C   A     G          
Sbjct: 123 LESPFEAAQKREPVRDENPFLAY--DPNLCIRCQRCVGACNDAARNHTLGTAKRGVRTLI 180

Query: 94  VRYDIDMIK---CIYCGLCQEACPVDAIVE 120
                   +   C  CG C +ACP  A+ E
Sbjct: 181 EAPFGADWRATDCESCGNCAQACPTGALTE 210


>gi|255526971|ref|ZP_05393864.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Clostridium carboxidivorans P7]
 gi|296185135|ref|ZP_06853545.1| 2-oxoacid:acceptor oxidoreductase, delta subunit,
           pyruvate/2-ketoisovalerate family [Clostridium
           carboxidivorans P7]
 gi|255509330|gb|EET85677.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Clostridium carboxidivorans P7]
 gi|296049969|gb|EFG89393.1| 2-oxoacid:acceptor oxidoreductase, delta subunit,
           pyruvate/2-ketoisovalerate family [Clostridium
           carboxidivorans P7]
          Length = 97

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 15/99 (15%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPN------GEERCIACKLCEAICPAQAITIESGPRCH 87
              PF     SP+   E  +             E+C+ C+ C   CP  ++ + +     
Sbjct: 6   EKIPFAGTVPSPQKENEGMITGNWRTRRPVLDAEKCVECQTCWISCPDSSVNLMTKDHPI 65

Query: 88  DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
           +   +          C  CG+C E CPV AI   P  +F
Sbjct: 66  NFNLKY---------CKGCGICAEVCPVGAISLVPELDF 95


>gi|239820155|ref|YP_002947340.1| Glutamate synthase (NADPH) [Variovorax paradoxus S110]
 gi|239805008|gb|ACS22074.1| Glutamate synthase (NADPH) [Variovorax paradoxus S110]
          Length = 599

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 24/80 (30%), Gaps = 20/80 (25%)

Query: 63  CIACKLCEAICPAQAITIESGPR--------------------CHDGTRRTVRYDIDMIK 102
           CI C  C  ICP   I+  +                          G +       D   
Sbjct: 506 CIECDACVDICPMDCISFTTNGDEADLRQRLKAPALNLAQDLYVSGGLKTGRVMVKDEDV 565

Query: 103 CIYCGLCQEACPVDAIVEGP 122
           C++CGLC E CP  A     
Sbjct: 566 CLHCGLCAERCPTGAWDMQK 585



 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 15/55 (27%), Gaps = 2/55 (3%)

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
            E      A T                +      CI C  C + CP+D I    N
Sbjct: 474 VEVELGFDAATAFKEAERCLNCDVQTVFT--ESACIECDACVDICPMDCISFTTN 526


>gi|194890619|ref|XP_001977354.1| GG18994 [Drosophila erecta]
 gi|190649003|gb|EDV46281.1| GG18994 [Drosophila erecta]
          Length = 1033

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 18/65 (27%), Gaps = 8/65 (12%)

Query: 59   GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP-VDA 117
             ++ CI C  C   C                  +          C  C LC   CP +D 
Sbjct: 951  DDDMCINCGKCYMTCA-------DSGYQAIEFDKDTHIPHVNDDCTGCTLCVSVCPIIDC 1003

Query: 118  IVEGP 122
            I   P
Sbjct: 1004 ITMVP 1008


>gi|182420185|ref|ZP_02951416.1| iron-sulfur cluster-binding protein [Clostridium butyricum 5521]
 gi|237667529|ref|ZP_04527513.1| iron-sulfur cluster-binding protein [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182375987|gb|EDT73577.1| iron-sulfur cluster-binding protein [Clostridium butyricum 5521]
 gi|237655877|gb|EEP53433.1| iron-sulfur cluster-binding protein [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 421

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 7/69 (10%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
                +CI C  C  ICP +AI + +  +            +D   C+ CG+C + CP D
Sbjct: 288 YVDTHKCIGCGKCTNICPMEAIGVTTIGKDKYA-------KVDDKLCLGCGVCVKNCPKD 340

Query: 117 AIVEGPNFE 125
           AI      E
Sbjct: 341 AIKLKRRKE 349



 Score = 40.1 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
            C  C+  C A     + G      T   + Y +D  KCI CG C   CP++AI     
Sbjct: 257 MCNCCKCHCEAFTSAKKFGLLVPVNTTSYIPY-VDTHKCIGCGKCTNICPMEAIGVTTI 314


>gi|167549451|ref|ZP_02343210.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|168466721|ref|ZP_02700575.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|168821497|ref|ZP_02833497.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|195630838|gb|EDX49430.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|205325401|gb|EDZ13240.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205342030|gb|EDZ28794.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|320087023|emb|CBY96792.1| NADH-quinone oxidoreductase subunits H/I NADH dehydrogenase I
           subunits H/I; NDH-1 subunit H/I [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 287

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 22/73 (30%), Gaps = 11/73 (15%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            + C  C  C   CP   I  +                I   +C  CG C   CP  A+ 
Sbjct: 190 PQECRMCGACWRSCPENVIQFDDN-----------TLTIAAARCTGCGGCAAVCPHQALR 238

Query: 120 EGPNFEFATETRQ 132
              + E A+    
Sbjct: 239 LRFDVEPASTRHS 251



 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 11/50 (22%)

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  +CPAQA ++  G              ID  +CI CG C   CPVDAI
Sbjct: 29  CADVCPAQAFSLAQGQVS-----------IDTTRCIACGDCLFVCPVDAI 67


>gi|87198759|ref|YP_496016.1| formate dehydrogenase, alpha subunit [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87134440|gb|ABD25182.1| formate dehydrogenase alpha subunit [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 952

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 28/81 (34%), Gaps = 4/81 (4%)

Query: 55  RYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            +     +CI C  C   C       A+TI+        +      D    +C+ CG C 
Sbjct: 159 YFDFDPSKCIVCSRCVRACDEVQGTFALTIDGRGFASKVSAGLGSDDYLSSECVSCGACV 218

Query: 111 EACPVDAIVEGPNFEFATETR 131
           +ACP   + E    E     R
Sbjct: 219 QACPTATLQEKAVKEIGKPER 239


>gi|13541665|ref|NP_111353.1| 2-oxoisovalerate-ferredoxin oxidoreductase, subunit delta (vorD)
           [Thermoplasma volcanium GSS1]
          Length = 94

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR--RTVRYDIDMIKCIYCGLC 109
            +++     ++CI C +C   CP  AI I++G       R  +     ID   C  CG+C
Sbjct: 18  RIQKPTIQYDKCIRCMICWKYCPDNAIEIKTGDEKAPNERVAKMEFPAIDYKFCKGCGIC 77

Query: 110 QEACPVDAIVE 120
              CP   I  
Sbjct: 78  ANECPEKCIDM 88


>gi|33602759|ref|NP_890319.1| ferredoxin [Bordetella bronchiseptica RB50]
 gi|33577201|emb|CAE35758.1| putative ferredoxin [Bordetella bronchiseptica RB50]
          Length = 213

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 24/70 (34%), Gaps = 10/70 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L      E  CI C LC   CP  AI   +             + +    C  C LC   
Sbjct: 77  LLVAVIDEAHCIGCTLCIKACPVDAIVGANK----------RMHTVLADWCTGCDLCVAP 126

Query: 113 CPVDAIVEGP 122
           CPVD I   P
Sbjct: 127 CPVDCIDMRP 136


>gi|332668414|ref|YP_004451202.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332337228|gb|AEE54329.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 1182

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 27/91 (29%), Gaps = 24/91 (26%)

Query: 58  NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY--DIDMI 101
              + CI C  C  +CP               QA         +       RY   + + 
Sbjct: 683 WEPDLCIQCGNCSFVCPHSVIRSKFYHEDHLQQAPEGFPSAPINARGFPETRYTLQVYVE 742

Query: 102 KCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
            C  C LC EACP          + A   R+
Sbjct: 743 DCTGCNLCVEACPA--------HDPADTERK 765


>gi|295092103|emb|CBK78210.1| hypothetical protein [Clostridium cf. saccharolyticum K10]
          Length = 252

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 34/99 (34%), Gaps = 12/99 (12%)

Query: 27  FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC 86
           F +   ++   F  G  +  F       +       CI+C  C  +CP   I ++ G   
Sbjct: 153 FPEPAISLKDKFISGIVNSLFYTFFVRSKKFRVSSSCISCGRCAKLCPLGNIRMKEGRP- 211

Query: 87  HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
                      +    C +C  C   CPV+AI  G   E
Sbjct: 212 -----------VWGDDCTHCMACICRCPVNAIEYGSRTE 239


>gi|289449986|ref|YP_003475788.1| electron transport complex, RnfABCDGE type subunit B [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
 gi|289184533|gb|ADC90958.1| electron transport complex, RnfABCDGE type, B subunit
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
          Length = 283

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/105 (22%), Positives = 33/105 (31%), Gaps = 11/105 (10%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +       C+    +    +    EK +T      +         +  CIAC  C   C
Sbjct: 179 SDMCKGCKKCVSVCPQKIIKMFPREEKKATVYCNNQDKGPTARKACKTACIACGACVRSC 238

Query: 74  PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           P +AI I                 ID+ KC  C  C   CP  AI
Sbjct: 239 PQKAIEIVDN-----------HAVIDITKCTGCMTCVNKCPTSAI 272



 Score = 41.2 bits (95), Expect = 0.042,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 6/70 (8%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQEACP 114
           + C  CK C ++CP + I +             +  +           CI CG C  +CP
Sbjct: 180 DMCKGCKKCVSVCPQKIIKMFPREEKKATVYCNNQDKGPTARKACKTACIACGACVRSCP 239

Query: 115 VDAIVEGPNF 124
             AI    N 
Sbjct: 240 QKAIEIVDNH 249



 Score = 34.7 bits (78), Expect = 4.0,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 18/63 (28%), Gaps = 11/63 (17%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+    C A CP  AI +                 I    C  C  C   CP   I   P
Sbjct: 153 CLGLGDCAAACPFDAIRVIDNLAV-----------IRSDMCKGCKKCVSVCPQKIIKMFP 201

Query: 123 NFE 125
             E
Sbjct: 202 REE 204


>gi|322418624|ref|YP_004197847.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Geobacter sp. M18]
 gi|320125011|gb|ADW12571.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           M18]
          Length = 408

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 27/85 (31%), Gaps = 16/85 (18%)

Query: 29  KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88
           +       P+ +       RG   L   PN +  C+ C  C   CP              
Sbjct: 178 RKFCKTVCPYGRIQLMTMERGTLTLEFDPNLKGACLRCGACVRACPMG------------ 225

Query: 89  GTRRTVRYDIDMIKCIYCGLCQEAC 113
                   D   I+CI CG C +AC
Sbjct: 226 ----IDIRDGLQIECINCGRCLDAC 246


>gi|254519455|ref|ZP_05131511.1| pyruvate-flavodoxin oxidoreductase [Clostridium sp. 7_2_43FAA]
 gi|226913204|gb|EEH98405.1| pyruvate-flavodoxin oxidoreductase [Clostridium sp. 7_2_43FAA]
          Length = 1170

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 29/91 (31%), Gaps = 19/91 (20%)

Query: 51  HALRRYPNGEERCIACKLCEAICPA--------------QAITIES-GPRCHDGTRRTVR 95
            A+      +++CI C  C  +CP                A       P     T     
Sbjct: 677 IAINVPEWQQDKCIQCNQCAYVCPHAVIRPFLLNENEKENAPESLKIVPAKALKTEEPTF 736

Query: 96  YDI--DMIKCIYCGLCQEACPVD--AIVEGP 122
           Y I    + C  CG C + CP    A++  P
Sbjct: 737 YTIGVTPLDCTGCGNCAQVCPAPGKALIMKP 767


>gi|198275774|ref|ZP_03208305.1| hypothetical protein BACPLE_01949 [Bacteroides plebeius DSM 17135]
 gi|198271403|gb|EDY95673.1| hypothetical protein BACPLE_01949 [Bacteroides plebeius DSM 17135]
          Length = 445

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 33/89 (37%), Gaps = 3/89 (3%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
              KA      P  KGS+      +   RR     + CI C  C ++CP           
Sbjct: 333 MMGKALVNTEVPICKGSSGVLIMNDKEARRA--EPQPCIRCAKCVSVCPMGLEPYLLATC 390

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
              G    V +++ M  CI CG CQ  CP
Sbjct: 391 SAHGDWERVEHEMIMS-CIECGSCQFTCP 418


>gi|126700799|ref|YP_001089696.1| putative dihydroorotate dehydrogenase, catalytic subunit
           [Clostridium difficile 630]
 gi|254976768|ref|ZP_05273240.1| putative dihydroorotate dehydrogenase, catalytic subunit
           [Clostridium difficile QCD-66c26]
 gi|255094153|ref|ZP_05323631.1| putative dihydroorotate dehydrogenase, catalytic subunit
           [Clostridium difficile CIP 107932]
 gi|255102322|ref|ZP_05331299.1| putative dihydroorotate dehydrogenase, catalytic subunit
           [Clostridium difficile QCD-63q42]
 gi|255308215|ref|ZP_05352386.1| putative dihydroorotate dehydrogenase, catalytic subunit
           [Clostridium difficile ATCC 43255]
 gi|255315904|ref|ZP_05357487.1| putative dihydroorotate dehydrogenase, catalytic subunit
           [Clostridium difficile QCD-76w55]
 gi|255518564|ref|ZP_05386240.1| putative dihydroorotate dehydrogenase, catalytic subunit
           [Clostridium difficile QCD-97b34]
 gi|255651684|ref|ZP_05398586.1| putative dihydroorotate dehydrogenase, catalytic subunit
           [Clostridium difficile QCD-37x79]
 gi|260684718|ref|YP_003216003.1| putative dihydroorotate dehydrogenase, catalytic subunit
           [Clostridium difficile CD196]
 gi|260688376|ref|YP_003219510.1| putative dihydroorotate dehydrogenase, catalytic subunit
           [Clostridium difficile R20291]
 gi|306521483|ref|ZP_07407830.1| putative dihydroorotate dehydrogenase, catalytic subunit
           [Clostridium difficile QCD-32g58]
 gi|115252236|emb|CAJ70076.1| Dihydroorotate dehydrogenase, catalytic subunit [Clostridium
           difficile]
 gi|260210881|emb|CBA66039.1| putative dihydroorotate dehydrogenase, catalytic subunit
           [Clostridium difficile CD196]
 gi|260214393|emb|CBE06800.1| putative dihydroorotate dehydrogenase, catalytic subunit
           [Clostridium difficile R20291]
          Length = 369

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 12/60 (20%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            + +CI CK C   C  +A+ +                 ID  KC  CGLC   CP  A+
Sbjct: 310 DDNKCIKCKQCVTSCVYEALEVTDKLN------------IDADKCFGCGLCVTRCPKGAL 357


>gi|86158828|ref|YP_465613.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775339|gb|ABC82176.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 648

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 4/68 (5%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP--NFEFA 127
           E      A    +             YD    KC+ CG C + CP   +   P  + +  
Sbjct: 533 EVETAFGAEEAIAQGARCLVCHVQTIYD--PEKCVLCGRCVDVCPEYCLALVPLEDVDLP 590

Query: 128 TETRQELY 135
            E R+ L 
Sbjct: 591 DEDRRALV 598



 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 26/87 (29%), Gaps = 14/87 (16%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIES--------------GPRCHDGTRRT 93
           R      +     E+C+ C  C  +CP   + +                      G    
Sbjct: 549 RCLVCHVQTIYDPEKCVLCGRCVDVCPEYCLALVPLEDVDLPDEDRRALVEAAAAGGLPL 608

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVE 120
                D   CI CGLC   CP DA+  
Sbjct: 609 SAMIKDDAPCIRCGLCAIRCPTDAMTM 635


>gi|83589813|ref|YP_429822.1| aldo/keto reductase [Moorella thermoacetica ATCC 39073]
 gi|83572727|gb|ABC19279.1| Aldo/keto reductase [Moorella thermoacetica ATCC 39073]
          Length = 337

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 11/58 (18%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           C     C   C   AIT+ +G              I+  KC+ CG C E CP  AI  
Sbjct: 290 CAGDGACLEACTNDAITMVNGKA-----------RINRAKCLLCGYCTEVCPQFAIRM 336


>gi|18313282|ref|NP_559949.1| putative ATPase RIL [Pyrobaculum aerophilum str. IM2]
 gi|18160804|gb|AAL64131.1| RNase L inhibitor homolog [Pyrobaculum aerophilum str. IM2]
          Length = 590

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 2/64 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + C   K C   C       +SG        +  +  I    CI CG+C   CP +AI
Sbjct: 8   DRDSCQP-KKCGHECVKYCPVNKSGKVV-WIDEQLKKAVISEALCIGCGICVHKCPFEAI 65

Query: 119 VEGP 122
               
Sbjct: 66  TIVN 69


>gi|16765847|ref|NP_461462.1| polyferredoxin [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|197262713|ref|ZP_03162787.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|16421071|gb|AAL21421.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|197240968|gb|EDY23588.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|261247723|emb|CBG25551.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267994646|gb|ACY89531.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301159076|emb|CBW18590.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312913514|dbj|BAJ37488.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|321222772|gb|EFX47843.1| Putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323130855|gb|ADX18285.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
          Length = 287

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 23/76 (30%), Gaps = 11/76 (14%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            + C  C  C   CP   I  +                I   +C  CG C   CP  A+ 
Sbjct: 190 PQECRMCGACWRSCPENVIQFDDN-----------TLTIAAARCTGCGGCAAVCPHQALR 238

Query: 120 EGPNFEFATETRQELY 135
              + E A+      Y
Sbjct: 239 LRFDVEPASTRHSTAY 254



 Score = 35.8 bits (81), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 11/50 (22%)

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  +CPAQA ++  G              ID  +CI CG C   CPVDAI
Sbjct: 29  CADVCPAQAFSLAQGQVS-----------IDTTRCIACGDCLFVCPVDAI 67


>gi|37520504|ref|NP_923881.1| iron-sulfur cluster binding protein [Gloeobacter violaceus PCC
           7421]
 gi|35211498|dbj|BAC88876.1| glr0935 [Gloeobacter violaceus PCC 7421]
          Length = 134

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 9/60 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  C+ C LC  +CP  A+ + +        R          +CI C  C   CPV AI
Sbjct: 80  DENLCVHCGLCTGVCPTGALALHAETFLLQFRR---------SRCIVCEQCVPVCPVAAI 130



 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 13/24 (54%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEG 121
           ID   C++CGLC   CP  A+   
Sbjct: 79  IDENLCVHCGLCTGVCPTGALALH 102


>gi|220931146|ref|YP_002508054.1| NADH dehydrogenase I subunit G [Halothermothrix orenii H 168]
 gi|219992456|gb|ACL69059.1| NADH dehydrogenase I subunit G [Halothermothrix orenii H 168]
          Length = 570

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 24/74 (32%), Gaps = 3/74 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPV 115
              +CI C  C   C                      +    +  ++C  CG C  ACP 
Sbjct: 146 EPNKCITCGRCIRKCEEVQEVGIFTTANRGPATVVTTFKEKGMGNVECTNCGQCIHACPT 205

Query: 116 DAIVEGPNFEFATE 129
            A+ E  ++E   E
Sbjct: 206 GALHEVYHYEKVWE 219


>gi|312621527|ref|YP_004023140.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Caldicellulosiruptor kronotskyensis 2002]
 gi|312201994|gb|ADQ45321.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Caldicellulosiruptor kronotskyensis 2002]
          Length = 373

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 10/57 (17%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
            +C+ C +C   C   AIT+    +            ID  KC+ CG C   C   A
Sbjct: 194 SKCVGCGMCVKSCAQLAITLNEKKKAV----------IDYEKCVGCGQCVAVCQFGA 240



 Score = 34.3 bits (77), Expect = 6.0,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 4/60 (6%)

Query: 65  ACKLCEAICPAQAITIESGPRCHDGTRRTVR----YDIDMIKCIYCGLCQEACPVDAIVE 120
             K  E      AI          G +  +       I   KC+ CG+C ++C   AI  
Sbjct: 154 HFKGHEMTGFGGAIKNIGMGSGSRGGKLFMHSSSKPVIKTSKCVGCGMCVKSCAQLAITL 213


>gi|301060593|ref|ZP_07201428.1| CobQ/CobB/MinD/ParA nucleotide binding domain protein [delta
           proteobacterium NaphS2]
 gi|300445296|gb|EFK09226.1| CobQ/CobB/MinD/ParA nucleotide binding domain protein [delta
           proteobacterium NaphS2]
          Length = 284

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 25/76 (32%), Gaps = 12/76 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E+C  C  C  IC  +AI +                   +  C  CG C E CP  AI
Sbjct: 63  DMEKCTLCGKCGEICQFRAIVVIGETVLPF-----------VEMCHSCGGCMEVCPEKAI 111

Query: 119 VEGPNFEFATETRQEL 134
            E    E     R + 
Sbjct: 112 TETTR-ELGVIERGQF 126


>gi|300114447|ref|YP_003761022.1| electron transport complex RnfABCDGE type subunit B [Nitrosococcus
           watsonii C-113]
 gi|299540384|gb|ADJ28701.1| electron transport complex, RnfABCDGE type, B subunit
           [Nitrosococcus watsonii C-113]
          Length = 209

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 27/84 (32%), Gaps = 10/84 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           +        R E         E RCI C LC   CP  AI                 + +
Sbjct: 88  QAPKPLDPARQEKLKALAVIDENRCIGCTLCIQACPVDAILGAPKQ----------LHTV 137

Query: 99  DMIKCIYCGLCQEACPVDAIVEGP 122
              +C  C LC   CPVD I   P
Sbjct: 138 ITAECTGCELCVAPCPVDCIEMVP 161


>gi|296452037|ref|ZP_06893750.1| possible dihydroorotate oxidase [Clostridium difficile NAP08]
 gi|296879567|ref|ZP_06903548.1| possible dihydroorotate oxidase [Clostridium difficile NAP07]
 gi|296259110|gb|EFH05992.1| possible dihydroorotate oxidase [Clostridium difficile NAP08]
 gi|296429449|gb|EFH15315.1| possible dihydroorotate oxidase [Clostridium difficile NAP07]
          Length = 369

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 12/60 (20%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            + +CI CK C   C  +A+ +                 ID  KC  CGLC   CP  A+
Sbjct: 310 DDNKCIKCKQCVTSCVYEALEVTDKLN------------IDADKCFGCGLCVTRCPKGAL 357


>gi|224367565|ref|YP_002601728.1| QmoB [Desulfobacterium autotrophicum HRM2]
 gi|223690281|gb|ACN13564.1| QmoB [Desulfobacterium autotrophicum HRM2]
          Length = 778

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 23/68 (33%), Gaps = 10/68 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +       +RC  CK C   CP  A+  +                I+  +C  CG C  A
Sbjct: 559 MTFPEFFMQRCTQCKRCTVECPFGALDDDEKGTPK----------INPTRCRRCGTCMGA 608

Query: 113 CPVDAIVE 120
           CP   I  
Sbjct: 609 CPERIISF 616


>gi|163787368|ref|ZP_02181815.1| Pyridine nucleotide-disulphide oxidoreductase domain protein
           [Flavobacteriales bacterium ALC-1]
 gi|159877256|gb|EDP71313.1| Pyridine nucleotide-disulphide oxidoreductase domain protein
           [Flavobacteriales bacterium ALC-1]
          Length = 529

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 9/62 (14%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           +CI+C  C   C           +           +I    C+ CG+C   CP   +   
Sbjct: 451 QCISCGNCSNSCEMGIDVRHYAQKGE---------NIVRSSCVGCGICSAVCPRGVLKLE 501

Query: 122 PN 123
            +
Sbjct: 502 ND 503


>gi|160933483|ref|ZP_02080871.1| hypothetical protein CLOLEP_02329 [Clostridium leptum DSM 753]
 gi|156867360|gb|EDO60732.1| hypothetical protein CLOLEP_02329 [Clostridium leptum DSM 753]
          Length = 313

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/70 (31%), Positives = 27/70 (38%), Gaps = 12/70 (17%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            + CI C  C   C A A TIE+G               D   C  CG C ++C   A+V
Sbjct: 64  PKNCIGCGACVKACKAGARTIENG-----------ILHYDRSVCTGCGACAQSCFTGALV 112

Query: 120 EGPNFEFATE 129
                E A E
Sbjct: 113 MSGK-EMAVE 121


>gi|331088814|ref|ZP_08337724.1| hypothetical protein HMPREF1025_01307 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330407337|gb|EGG86840.1| hypothetical protein HMPREF1025_01307 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 291

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 37/122 (30%), Gaps = 30/122 (24%)

Query: 18  GAFFLCLRYFFKAKTTI-----------NYPFEKGSTS----PRFRGEHALRRYPNGEER 62
                 L + F  K TI             PF K             + +  +     E+
Sbjct: 176 SGIRAALGHLFTFKFTILALFIILSILFYRPFCKWICPLGAIYSLFNKVSFLKIQVDHEK 235

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+ C+ C  +C      +++                    CI CG C +ACP DAI    
Sbjct: 236 CVGCQKCSRVCKMDVNVVDTPNHPE---------------CIRCGECMKACPTDAICYHY 280

Query: 123 NF 124
            F
Sbjct: 281 GF 282


>gi|330997031|ref|ZP_08320893.1| ferredoxin [Paraprevotella xylaniphila YIT 11841]
 gi|329571529|gb|EGG53211.1| ferredoxin [Paraprevotella xylaniphila YIT 11841]
          Length = 318

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 29/83 (34%), Gaps = 11/83 (13%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P  +         +         +  CI C  C   CP +AIT+ +              
Sbjct: 198 PKNRRMVVMCVNRDKGAVANKVCKASCIGCGKCVKTCPFEAITLNNNLAY---------- 247

Query: 97  DIDMIKCIYCGLCQEACPVDAIV 119
            ID  KC  C  C+EACP  AI 
Sbjct: 248 -IDPEKCKLCRKCEEACPKGAIH 269



 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 27/76 (35%), Gaps = 8/76 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD--------IDMIKCIYCGLCQ 110
            EERC AC  C   CP + I +      +                  +    CI CG C 
Sbjct: 172 DEERCTACGACVKTCPRRVIELRPKGPKNRRMVVMCVNRDKGAVANKVCKASCIGCGKCV 231

Query: 111 EACPVDAIVEGPNFEF 126
           + CP +AI    N  +
Sbjct: 232 KTCPFEAITLNNNLAY 247



 Score = 33.9 bits (76), Expect = 7.3,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 9/60 (15%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+    C A C   A++I                ++D  +C  CG C + CP   I   P
Sbjct: 145 CLGGGDCVAACQFGALSINPETGLP---------EVDEERCTACGACVKTCPRRVIELRP 195


>gi|313114802|ref|ZP_07800302.1| putative ferredoxin [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310622857|gb|EFQ06312.1| putative ferredoxin [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 299

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 26/79 (32%), Gaps = 11/79 (13%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           +         +            CIAC +CE  C   AI +  G              ID
Sbjct: 191 RKPVVMCSNKDKGPVAMKACTTSCIACGMCERTCKFDAIHVVDG-----------VARID 239

Query: 100 MIKCIYCGLCQEACPVDAI 118
             KC  CG+C + CP   I
Sbjct: 240 YDKCKGCGMCAQKCPKHII 258



 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 6/67 (8%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRC------HDGTRRTVRYDIDMIKCIYCGLCQEA 112
            +++C  C  C  ICP Q I I+ G          +  +  V        CI CG+C+  
Sbjct: 164 DKDKCTGCGACANICPKQVIMIDVGGPRKPVVMCSNKDKGPVAMKACTTSCIACGMCERT 223

Query: 113 CPVDAIV 119
           C  DAI 
Sbjct: 224 CKFDAIH 230



 Score = 35.1 bits (79), Expect = 3.0,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 20/58 (34%), Gaps = 11/58 (18%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           C+    C  +C   AI I  G              +D  KC  CG C   CP   I+ 
Sbjct: 139 CVGLGDCTKVCKFDAIHIVDG-----------VAKVDKDKCTGCGACANICPKQVIMI 185


>gi|307106800|gb|EFN55045.1| hypothetical protein CHLNCDRAFT_24040 [Chlorella variabilis]
          Length = 642

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 25/66 (37%), Gaps = 2/66 (3%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQEACPVDAI 118
            RC+ C  C   C         G +     R        +D+ KCI CG C   CPV AI
Sbjct: 139 CRCLKCGRCVTACGLVQEMDVLGMKGRSRERHPAVLTEAMDLSKCISCGQCAVMCPVGAI 198

Query: 119 VEGPNF 124
            E   +
Sbjct: 199 TERAEW 204



 Score = 42.0 bits (97), Expect = 0.027,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 27/85 (31%), Gaps = 8/85 (9%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIAC---KLCEAICPAQAITIESGPRCHD 88
            T + P  K       RG  AL +  N    C+ C     CE              +   
Sbjct: 72  VTTDSPQVK----DSIRGVLALLK-ANHPADCMTCDVSGRCEFQARPGFWGGAWAGQRMA 126

Query: 89  GTRRTVRYDIDMIKCIYCGLCQEAC 113
             R+     +   +C+ CG C  AC
Sbjct: 127 CPRQRPMLPMLGCRCLKCGRCVTAC 151


>gi|302335287|ref|YP_003800494.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Olsenella uli DSM
           7084]
 gi|301319127|gb|ADK67614.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Olsenella uli DSM
           7084]
          Length = 1184

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 29/102 (28%), Gaps = 23/102 (22%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA----------------QAITIESGPRCHDGTR 91
           RG   +    +   +CI C  C  +CP                        G +    T 
Sbjct: 683 RGTAVMVPRWDE-SKCIQCNNCAYVCPHATIRPVAMNAEEAAAAPEAMKTVGLKIPKNTG 741

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVD------AIVEGPNFEFA 127
            T    +  + C+ C  C   CP        A+   P  E A
Sbjct: 742 YTFTVAVSPLDCMGCYNCVAICPKSDMKEGGALTMVPQEEEA 783


>gi|293396004|ref|ZP_06640285.1| pyruvate-ferredoxin oxidoreductase [Serratia odorifera DSM 4582]
 gi|291421502|gb|EFE94750.1| pyruvate-ferredoxin oxidoreductase [Serratia odorifera DSM 4582]
          Length = 1177

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 25/102 (24%), Gaps = 18/102 (17%)

Query: 31  KTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAICPA------------- 75
             +   P        +   +   A +      E C  C  C A CP              
Sbjct: 655 PVSAFPPDGTWPVGTTQWEKRNIAEQVPIWQAELCTQCNHCVAACPHSAIRAKVVAPEAI 714

Query: 76  -QAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACP 114
             A              R  +Y   +    C  C LC E CP
Sbjct: 715 ADAPAGLQSLDVKARDMRGQKYLLQVAPEDCTGCNLCVEVCP 756


>gi|257094156|ref|YP_003167797.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Candidatus Accumulibacter phosphatis clade IIA str.
           UW-1]
 gi|257046680|gb|ACV35868.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 614

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 23/80 (28%), Gaps = 20/80 (25%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRR--------------------TVRYDIDMIK 102
           CI C  C  ICP   I+        +   R                          D   
Sbjct: 510 CIECDACMDICPMDCISFTGNAEEDELRPRLRAPALNTSQDLYVSEILKTGRVMVKDEDV 569

Query: 103 CIYCGLCQEACPVDAIVEGP 122
           C++CGLC E CP  A     
Sbjct: 570 CLHCGLCAERCPTGAWDMQK 589



 Score = 34.3 bits (77), Expect = 5.1,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 12/26 (46%)

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFE 125
              CI C  C + CP+D I    N E
Sbjct: 507 PKLCIECDACMDICPMDCISFTGNAE 532


>gi|257064355|ref|YP_003144027.1| predicted oxidoreductase of aldo/keto reductase family [Slackia
           heliotrinireducens DSM 20476]
 gi|256792008|gb|ACV22678.1| predicted oxidoreductase of aldo/keto reductase family [Slackia
           heliotrinireducens DSM 20476]
          Length = 370

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 26/79 (32%), Gaps = 12/79 (15%)

Query: 62  RCIACKLCEAICPAQAI-----------TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            C +CK C   CP                     R     +  V+       CI+CG C+
Sbjct: 290 PCTSCKYCMKECPMNINIAGIFDAVNRGAQFGNDRAKRTYKMNVQSYGKASDCIHCGQCE 349

Query: 111 EACPVDAIVEGPNFEFATE 129
           +ACP   I      E A E
Sbjct: 350 DACPQH-IAVMDELEKAAE 367


>gi|167042247|gb|ABZ06978.1| putative 4Fe-4S binding domain protein [uncultured marine
           crenarchaeote HF4000_ANIW93J19]
 gi|167042964|gb|ABZ07678.1| putative 4Fe-4S binding domain protein [uncultured marine
           crenarchaeote HF4000_ANIW137N18]
          Length = 103

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 1/69 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+RCI C LC  IC      +        G +R   +     +CI  G C   CP  +I
Sbjct: 10  DEQRCIGCALCVEICTTLGPDVLRVKPVE-GWKRGKAFVFYPERCISDGACIGVCPTKSI 68

Query: 119 VEGPNFEFA 127
                  + 
Sbjct: 69  FWMRPMNYT 77


>gi|188584663|ref|YP_001916208.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179349350|gb|ACB83620.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 1175

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 18/93 (19%)

Query: 51  HALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY 96
            A++     ++ CI C  C  +CP               +A       +        ++Y
Sbjct: 679 IAVKVPEWQKDNCIQCNQCSLVCPHAAIRPFLLDETELSKAPENFETKKALGKALSGLQY 738

Query: 97  DID--MIKCIYCGLCQEACP--VDAIVEGPNFE 125
            I    + C  CG C++ CP    A++  P  E
Sbjct: 739 RIQVSPLDCAGCGNCEQVCPAKEKALIMKPRPE 771


>gi|182416719|ref|ZP_02948119.1| pyruvate:ferredoxin oxidoreductase [Clostridium butyricum 5521]
 gi|237667533|ref|ZP_04527517.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182379444|gb|EDT76938.1| pyruvate:ferredoxin  oxidoreductase [Clostridium butyricum 5521]
 gi|237655881|gb|EEP53437.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 1171

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/105 (25%), Positives = 37/105 (35%), Gaps = 20/105 (19%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTR- 91
           F  G+T+   RG           +RCI C  C  +CP   I     T E   +   G + 
Sbjct: 666 FMHGTTAYEKRGVAVNVPEWI-PDRCIQCNQCSYVCPHATIRPFLLTDEEKNKAPQGFKS 724

Query: 92  ---------RTVRYDI--DMIKCIYCGLCQEACPVD--AIVEGPN 123
                      + Y I    + C  CG C E CP    A++  P 
Sbjct: 725 VLPKGIKSEEQLNYTIGVSPLDCTGCGNCAEVCPAPGKALIMKPQ 769


>gi|192289233|ref|YP_001989838.1| formate dehydrogenase, alpha subunit [Rhodopseudomonas palustris
           TIE-1]
 gi|192282982|gb|ACE99362.1| formate dehydrogenase, alpha subunit [Rhodopseudomonas palustris
           TIE-1]
          Length = 948

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 29/97 (29%), Gaps = 6/97 (6%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVR 95
           EK                 +   +CI C  C   C     T     +G          ++
Sbjct: 146 EKHPNPGLDESNPYFTYDAS---KCIVCSRCVRACEEVQGTFALTIAGRGFDSVVSPGMQ 202

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
                 +C+ CG C +ACP   + E    E  T  R 
Sbjct: 203 ESFLGSECVSCGACVQACPTATLNEKSVIEIGTPERS 239


>gi|281356043|ref|ZP_06242536.1| putative PAS/PAC sensor protein [Victivallis vadensis ATCC BAA-548]
 gi|281317412|gb|EFB01433.1| putative PAS/PAC sensor protein [Victivallis vadensis ATCC BAA-548]
          Length = 572

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 11/63 (17%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             C  C  C   CP +AI I  G              +    C+ CG+C + CP  A   
Sbjct: 12  NICHDCYKCIRHCPCKAIRIVDGRAG-----------VIQDLCVACGMCVKVCPAHAKKI 60

Query: 121 GPN 123
            P+
Sbjct: 61  RPD 63


>gi|158522547|ref|YP_001530417.1| Na(+)-translocating NADH-quinone reductase subunit A [Desulfococcus
           oleovorans Hxd3]
 gi|158511373|gb|ABW68340.1| Na-translocating NADH-quinone reductase subunit A [Desulfococcus
           oleovorans Hxd3]
          Length = 446

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 1/59 (1%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
               E  C+ C  C  +CP   +   +      G          ++ C+ CGLC   CP
Sbjct: 366 MHGEERACVNCGTCATVCPVDILPQFTVKAVLAGE-VEESLAHGLLDCVECGLCAYVCP 423


>gi|121533899|ref|ZP_01665725.1| Cobyrinic acid a,c-diamide synthase [Thermosinus carboxydivorans
           Nor1]
 gi|121307410|gb|EAX48326.1| Cobyrinic acid a,c-diamide synthase [Thermosinus carboxydivorans
           Nor1]
          Length = 306

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 22/73 (30%), Gaps = 14/73 (19%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
            G  A          C  C +C  +C   AIT  +                  + C  CG
Sbjct: 53  HGFTAGFEPHVDHTNCNGCGICTRLCRFGAITSGTLT--------------SPLDCEGCG 98

Query: 108 LCQEACPVDAIVE 120
           +C   CP  AI  
Sbjct: 99  VCAFNCPQHAIAM 111


>gi|90416712|ref|ZP_01224642.1| formate dehydrogenase, alpha subunit [marine gamma proteobacterium
           HTCC2207]
 gi|90331465|gb|EAS46701.1| formate dehydrogenase, alpha subunit [marine gamma proteobacterium
           HTCC2207]
          Length = 948

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 23/74 (31%), Gaps = 3/74 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T      G         +   D    +C+ CG C  
Sbjct: 161 YFTFDPSKCIVCSRCVRACEEVQGTFALTIDGRGFESKVSASQAEDFMDSECVSCGACVN 220

Query: 112 ACPVDAIVEGPNFE 125
           ACP   + E    E
Sbjct: 221 ACPTATLTEKSIIE 234


>gi|126699072|ref|YP_001087969.1| putative iron-sulfur protein [Clostridium difficile 630]
 gi|254975022|ref|ZP_05271494.1| putative iron-sulfur protein [Clostridium difficile QCD-66c26]
 gi|255092411|ref|ZP_05321889.1| putative iron-sulfur protein [Clostridium difficile CIP 107932]
 gi|255306435|ref|ZP_05350606.1| putative iron-sulfur protein [Clostridium difficile ATCC 43255]
 gi|255314150|ref|ZP_05355733.1| putative iron-sulfur protein [Clostridium difficile QCD-76w55]
 gi|255516828|ref|ZP_05384504.1| putative iron-sulfur protein [Clostridium difficile QCD-97b34]
 gi|255649929|ref|ZP_05396831.1| putative iron-sulfur protein [Clostridium difficile QCD-37x79]
 gi|260683084|ref|YP_003214369.1| putative iron-sulfur protein [Clostridium difficile CD196]
 gi|260686682|ref|YP_003217815.1| putative iron-sulfur protein [Clostridium difficile R20291]
 gi|306520014|ref|ZP_07406361.1| putative iron-sulfur protein [Clostridium difficile QCD-32g58]
 gi|115250509|emb|CAJ68333.1| putative iron-sulfur protein [Clostridium difficile]
 gi|260209247|emb|CBA62547.1| putative iron-sulfur protein [Clostridium difficile CD196]
 gi|260212698|emb|CBE03782.1| putative iron-sulfur protein [Clostridium difficile R20291]
          Length = 424

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 7/69 (10%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               E C+ C  C   CP  AI+                  ID  +C+ CG+C   C  +
Sbjct: 289 NINHENCVKCGKCITACPIDAISKVKEDGKEY-------IKIDEDRCLGCGVCVRNCHKN 341

Query: 117 AIVEGPNFE 125
           +I+     E
Sbjct: 342 SIMLLKRDE 350


>gi|83590444|ref|YP_430453.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica ATCC
           39073]
 gi|83573358|gb|ABC19910.1| putative sulfite reductase-associated electron transfer protein
           DsrO [Moorella thermoacetica ATCC 39073]
          Length = 258

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 30/89 (33%), Gaps = 13/89 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHD----GTRRTVRYDIDMIKCIYC-------- 106
              RCI C+ C A CP  A +                   R    + KC  C        
Sbjct: 148 DYHRCIGCRYCMAACPYGARSFNFRDPRPYIKELNPAYPTREKGVVEKCTLCVERIDTGL 207

Query: 107 -GLCQEACPVDAIVEGPNFEFATETRQEL 134
              C E CP  AI  G   + ++E RQ L
Sbjct: 208 PPACVEVCPAKAITFGDLEDPSSEARQLL 236



 Score = 35.1 bits (79), Expect = 3.5,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 32/112 (28%), Gaps = 20/112 (17%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACK--LCEAICPAQAITIESGPRCHDGTRRTV 94
           P+       +        +       C  C    C  +CP +A             R+  
Sbjct: 94  PYGDAFPDQQHELMAEDIKNNPFIVLCNHCDKPPCVRVCPTRATFK----------RQDG 143

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEG--------PNFEFATETRQELYYDK 138
              ID  +CI C  C  ACP  A                 A  TR++   +K
Sbjct: 144 IVMIDYHRCIGCRYCMAACPYGARSFNFRDPRPYIKELNPAYPTREKGVVEK 195


>gi|57642013|ref|YP_184491.1| 4Fe-4S cluster-binding protein [Thermococcus kodakarensis KOD1]
 gi|57160337|dbj|BAD86267.1| 4Fe-4S cluster-binding protein [Thermococcus kodakarensis KOD1]
          Length = 162

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 5/81 (6%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           K S  P     + L       E CI C  C  +CPA A+         D      +  ++
Sbjct: 6   KCSLIPLEHLPNGLGVPQIDPELCIGCGACVNVCPAGAL-----QAIDDYMEGIRKISLN 60

Query: 100 MIKCIYCGLCQEACPVDAIVE 120
           + KC  C  C+E CP  AI  
Sbjct: 61  IGKCTPCTRCEEVCPTGAIKI 81



 Score = 38.5 bits (88), Expect = 0.27,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 13/30 (43%)

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
              ID   CI CG C   CP  A+    ++
Sbjct: 21  VPQIDPELCIGCGACVNVCPAGALQAIDDY 50


>gi|45358388|ref|NP_987945.1| heterodisulfide reductase subunit A [Methanococcus maripaludis S2]
 gi|44921146|emb|CAF30381.1| heterodisulfide reductase subunit A [Methanococcus maripaludis S2]
          Length = 654

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 30/88 (34%), Gaps = 7/88 (7%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE-------SGPRCHDGTRRTVRYDI 98
            F+ +   +     EE+C  C  CE +CP                           +Y I
Sbjct: 229 NFKVKIEKKPRYLSEEKCTGCGSCEEVCPISVPNEFDMGIGLRKAIYKPFPQAVPAKYTI 288

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEF 126
           D   CI CGLC + C   AI  G   E 
Sbjct: 289 DKESCIDCGLCAKVCGPQAIDYGQKPEI 316



 Score = 40.5 bits (93), Expect = 0.080,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 21/64 (32%), Gaps = 7/64 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  C AC +C   CP  A                V  ++    C  CG C   CP  A+
Sbjct: 580 DENVCGACGICVQQCPYGAPRFVEKD-------GKVVAEVLSALCKGCGTCAAGCPSGAL 632

Query: 119 VEGP 122
            +  
Sbjct: 633 EQSH 636


>gi|219668789|ref|YP_002459224.1| nitrite and sulphite reductase 4Fe-4S region [Desulfitobacterium
           hafniense DCB-2]
 gi|219539049|gb|ACL20788.1| nitrite and sulphite reductase 4Fe-4S region [Desulfitobacterium
           hafniense DCB-2]
          Length = 198

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 12/56 (21%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C+ C   C   A++ +                    KCI CG C  +CP D I
Sbjct: 90  CTGCQACCRSCQEGALSWQGELEFE------------PTKCIGCGDCVRSCPTDKI 133


>gi|310658148|ref|YP_003935869.1| periplasmic [fe] hydrogenase large subunit [Clostridium sticklandii
           DSM 519]
 gi|308824926|emb|CBH20964.1| Periplasmic [Fe] hydrogenase large subunit (Fe hydrogenlyase)
           [Clostridium sticklandii]
          Length = 456

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 10/80 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +E C  CK+C  +CP  AI+ ++G              ID  KC+ CG C + C   A 
Sbjct: 6   DQELCTGCKMCSDVCPVDAISGDAGKPQS----------IDENKCVLCGQCVQMCSSFAS 55

Query: 119 VEGPNFEFATETRQELYYDK 138
           V     E   +   +    K
Sbjct: 56  VFDEEIEPIEKKLSDRKMLK 75



 Score = 35.5 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   C  C +C + CPVDAI
Sbjct: 5   IDQELCTGCKMCSDVCPVDAI 25


>gi|303246231|ref|ZP_07332511.1| NADH dehydrogenase (quinone) [Desulfovibrio fructosovorans JJ]
 gi|302492294|gb|EFL52166.1| NADH dehydrogenase (quinone) [Desulfovibrio fructosovorans JJ]
          Length = 632

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 35/98 (35%), Gaps = 19/98 (19%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGE--HALRRYPNGEERCIACKLCEAICPAQAITI 80
            L++F K        +E+     R R     AL R       C  C+LC   CP  AI  
Sbjct: 549 TLKHFRKE-------YEEHVFEKRCRAGRCKALARPTINPALCKGCRLCVKACPVGAIMG 601

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           E              + ID   C+ CG C  AC   A+
Sbjct: 602 EKKQP----------HRIDEGLCVKCGACAAACKFGAV 629



 Score = 39.3 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 17/41 (41%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            +          +   R  I+   C  C LC +ACPV AI+
Sbjct: 560 HVFEKRCRAGRCKALARPTINPALCKGCRLCVKACPVGAIM 600


>gi|302379604|ref|ZP_07268089.1| molybdopterin oxidoreductase Fe4S4 domain protein [Finegoldia magna
           ACS-171-V-Col3]
 gi|303234540|ref|ZP_07321177.1| molybdopterin oxidoreductase Fe4S4 domain protein [Finegoldia magna
           BVS033A4]
 gi|302312511|gb|EFK94507.1| molybdopterin oxidoreductase Fe4S4 domain protein [Finegoldia magna
           ACS-171-V-Col3]
 gi|302494374|gb|EFL54143.1| molybdopterin oxidoreductase Fe4S4 domain protein [Finegoldia magna
           BVS033A4]
          Length = 355

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 3/63 (4%)

Query: 59  GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115
            + +CI C  C  +C   Q             +  +  +D+ + K  C  CG C   CP 
Sbjct: 149 DQNKCILCGKCVRVCEEVQCTHTIDFKNRGFDSYISTAFDLPLSKENCRMCGQCISVCPT 208

Query: 116 DAI 118
            A+
Sbjct: 209 GAL 211


>gi|326202673|ref|ZP_08192541.1| hypothetical protein Cpap_2773 [Clostridium papyrosolvens DSM 2782]
 gi|325987257|gb|EGD48085.1| hypothetical protein Cpap_2773 [Clostridium papyrosolvens DSM 2782]
          Length = 256

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 23/66 (34%), Gaps = 11/66 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C  C++CE  CP  AI + +               I   +CI C  C   CP +A 
Sbjct: 190 DYALCTKCRMCEKFCPVNAIQLTN-----------QHMKIQHKQCISCMRCVNYCPQNAF 238

Query: 119 VEGPNF 124
             G   
Sbjct: 239 TLGEKH 244



 Score = 37.8 bits (86), Expect = 0.58,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%)

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           + A+   S  R     + + R  ID   C  C +C++ CPV+AI      
Sbjct: 167 SDAMRYISKGR-SIWIKTSERIGIDYALCTKCRMCEKFCPVNAIQLTNQH 215


>gi|289805686|ref|ZP_06536315.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 242

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 25/78 (32%), Gaps = 12/78 (15%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            + C  C  C   CP   I  +                I   +C  CG C   CP  A+ 
Sbjct: 145 PQECRMCGACWRSCPENVIQFDDD-----------TLTIAAARCTGCGGCAAVCPHQALR 193

Query: 120 EGPNFEFATETRQELYYD 137
              + E A+ TR    + 
Sbjct: 194 LRFDVEPAS-TRHSAVHT 210



 Score = 34.7 bits (78), Expect = 4.5,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID  +CI CG C   CPVDAI
Sbjct: 2   IDTTRCIACGDCLFVCPVDAI 22


>gi|254168436|ref|ZP_04875281.1| 4Fe-4S binding domain protein [Aciduliprofundum boonei T469]
 gi|289595766|ref|YP_003482462.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Aciduliprofundum boonei T469]
 gi|197622717|gb|EDY35287.1| 4Fe-4S binding domain protein [Aciduliprofundum boonei T469]
 gi|289533553|gb|ADD07900.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Aciduliprofundum boonei T469]
          Length = 166

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 9/99 (9%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
           +   Y  +   T+    +K       R +           + I C  C+ ICP  AI ++
Sbjct: 1   MTEEYLERGYLTLEELKKKVELPSEERLQGKHPVAVPECPQRIPCTPCKEICPVNAIKMD 60

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           +               ++  +CI C LC + CP  A   
Sbjct: 61  NPNDPPV---------VNYDRCIGCSLCVQICPGLAFFM 90


>gi|169824849|ref|YP_001692460.1| NAD-dependent formate dehydrogenase subunit alpha [Finegoldia magna
           ATCC 29328]
 gi|167831654|dbj|BAG08570.1| NAD-dependent formate dehydrogenase alpha subunit [Finegoldia magna
           ATCC 29328]
          Length = 355

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 3/63 (4%)

Query: 59  GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115
            + +CI C  C  +C   Q             +  +  +D+ + K  C  CG C   CP 
Sbjct: 149 DQNKCILCGKCVRVCEEVQCTHTIDFKNRGFDSYISTAFDLPLSKENCRMCGQCISVCPT 208

Query: 116 DAI 118
            A+
Sbjct: 209 GAL 211


>gi|167747312|ref|ZP_02419439.1| hypothetical protein ANACAC_02028 [Anaerostipes caccae DSM 14662]
 gi|167653290|gb|EDR97419.1| hypothetical protein ANACAC_02028 [Anaerostipes caccae DSM 14662]
          Length = 202

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 33/97 (34%), Gaps = 18/97 (18%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
              +     EE+C  C LC + C   AI +  G              I    C   G C 
Sbjct: 1   MIRQIIKIDEEKCNGCGLCASACHEGAIQMIGGKAKL----------IRDDYCDGLGNCL 50

Query: 111 EACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDR 147
             CP  AI        + E R+   Y+K  +L N  +
Sbjct: 51  PMCPTGAI--------SFEDREAPDYNKAAVLENQRK 79


>gi|134045695|ref|YP_001097181.1| CoB--CoM heterodisulfide reductase subunit A [Methanococcus
           maripaludis C5]
 gi|132663320|gb|ABO34966.1| CoB--CoM heterodisulfide reductase subunit A [Methanococcus
           maripaludis C5]
          Length = 654

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 30/88 (34%), Gaps = 7/88 (7%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE-------SGPRCHDGTRRTVRYDI 98
            F+ +   +     EE+C  C  CE +CP                           +Y I
Sbjct: 229 NFKVKIEKKPRYLSEEKCTGCGSCEEVCPISVPNEFDMGIGLRKAIYKPFPQAVPAKYTI 288

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEF 126
           D   CI CGLC + C   AI  G   E 
Sbjct: 289 DKESCIDCGLCAKVCGPQAIDYGQKPEI 316



 Score = 40.5 bits (93), Expect = 0.080,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 20/64 (31%), Gaps = 7/64 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  C  C +C   CP  A                V  ++    C  CG C   CP  A+
Sbjct: 580 DENVCGGCGICVQQCPYGAPRFVEKD-------GKVVAEVLSALCKGCGTCAAGCPSGAL 632

Query: 119 VEGP 122
            +  
Sbjct: 633 EQSH 636


>gi|154175333|ref|YP_001409057.1| NapH/MauN family ferredoxin-type protein [Campylobacter curvus
           525.92]
 gi|112804050|gb|EAU01394.1| ferredoxin-type protein, NapH/MauN family [Campylobacter curvus
           525.92]
          Length = 300

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 25/67 (37%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
             + RC  C +C  +C    +   +  +  D   +   + I    C  CG C + C  DA
Sbjct: 230 WDKNRCDHCLVCIDVCLVPHVLEMTKTKAKDSGEQKETFRIAGADCTLCGRCIDVCHQDA 289

Query: 118 IVEGPNF 124
           +     F
Sbjct: 290 LKFDNGF 296


>gi|17228257|ref|NP_484805.1| bidirectional hydrogenase complex protein HoxU [Nostoc sp. PCC
           7120]
 gi|17130107|dbj|BAB72719.1| hydrogenase chain U [Nostoc sp. PCC 7120]
          Length = 238

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 22/65 (33%), Gaps = 4/65 (6%)

Query: 59  GEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLCQEACP 114
              RC+ C  C  +C     A T +   R  +    T           C  CG C  ACP
Sbjct: 144 DHNRCVLCTRCIRVCDEIEGAHTWDMAGRGTNSHVITDLSQPWGTSDTCTSCGKCVNACP 203

Query: 115 VDAIV 119
             AI 
Sbjct: 204 TGAIF 208


>gi|332298441|ref|YP_004440363.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Treponema brennaborense DSM 12168]
 gi|332181544|gb|AEE17232.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Treponema brennaborense DSM 12168]
          Length = 394

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 6/62 (9%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +      + +C  C  C   CP  AI +E+        +      +D  KCI CGLC + 
Sbjct: 1   MNVSTVEKNKCFGCGSCFQACPKNAIRMEADSEGFLFPK------VDEEKCIDCGLCVKK 54

Query: 113 CP 114
           CP
Sbjct: 55  CP 56



 Score = 34.7 bits (78), Expect = 3.8,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 101 IKCIYCGLCQEACPVDAIVEGPNFE 125
            KC  CG C +ACP +AI    + E
Sbjct: 9   NKCFGCGSCFQACPKNAIRMEADSE 33


>gi|284167342|ref|YP_003405620.1| NADH:ubiquinone oxidoreductase, subunit G, iron- sulphur binding
           protein [Haloterrigena turkmenica DSM 5511]
 gi|284016997|gb|ADB62947.1| NADH:ubiquinone oxidoreductase, subunit G, iron- sulphur binding
           protein [Haloterrigena turkmenica DSM 5511]
          Length = 320

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 5/77 (6%)

Query: 57  PNGEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
                +CI C  C   C        + +E   +      ++    ++   C+ CG C   
Sbjct: 178 QIDRNKCILCNRCVEACNDVQVEGVLRMEGSGQDTRIGFQSDAETMEESTCVSCGHCVTV 237

Query: 113 CPVDAIVEGPNFEFATE 129
           CP  ++VE    E AT 
Sbjct: 238 CPTGSLVEKGI-ENATT 253


>gi|257064390|ref|YP_003144062.1| 4Fe-4S protein [Slackia heliotrinireducens DSM 20476]
 gi|256792043|gb|ACV22713.1| 4Fe-4S protein [Slackia heliotrinireducens DSM 20476]
          Length = 450

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 6/66 (9%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               + C +C++C   CP  AI+         G       +     C+ C LC+  CP  
Sbjct: 309 NIDTDICRSCRMCTVFCPTGAISRFDTKDDAFG------VEHRSALCMQCRLCETICPEH 362

Query: 117 AIVEGP 122
           AI    
Sbjct: 363 AITVSD 368



 Score = 39.3 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 11/53 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C ++C   AI+                  +D  KCI CG C  ACP   +
Sbjct: 29  CLRCASVCTTGAISKSEAGV-----------TVDPDKCIGCGTCATACPSCCL 70


>gi|242064838|ref|XP_002453708.1| hypothetical protein SORBIDRAFT_04g011050 [Sorghum bicolor]
 gi|241933539|gb|EES06684.1| hypothetical protein SORBIDRAFT_04g011050 [Sorghum bicolor]
          Length = 597

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 24/54 (44%)

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C   C  +     +G +C + T+ +    I    C+ CG+C + CP +AI    
Sbjct: 21  CGQECRRRCPVNATGRQCIEVTQSSKVSLISEDLCVGCGICVKVCPFNAIQIIN 74


>gi|237737091|ref|ZP_04567572.1| anaerobic sulfite reduction protein C [Fusobacterium mortiferum
           ATCC 9817]
 gi|229420953|gb|EEO36000.1| anaerobic sulfite reduction protein C [Fusobacterium mortiferum
           ATCC 9817]
          Length = 321

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 24/87 (27%), Gaps = 8/87 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +         G   +       +RCI+C  C   C                T    R
Sbjct: 146 CPNDCAKVRMHDFGIMGMTLPQFEPDRCISCGACVRAC--------KKKSTGALTSVNYR 197

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGP 122
              D  KCI CG C   CP  A     
Sbjct: 198 PQRDHQKCIGCGECVINCPNMAWTRSK 224


>gi|167768634|ref|ZP_02440687.1| hypothetical protein CLOSS21_03193 [Clostridium sp. SS2/1]
 gi|167710158|gb|EDS20737.1| hypothetical protein CLOSS21_03193 [Clostridium sp. SS2/1]
 gi|291560581|emb|CBL39381.1| Coenzyme F420-reducing hydrogenase, beta subunit
           [butyrate-producing bacterium SSC/2]
          Length = 413

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 6/60 (10%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
               + ++ C AC  C  ICP  AI ++            +   ID  KC+ CG CQ+ C
Sbjct: 6   IILFDDKKNCCACGACMNICPKNAIKMQEDEYG------FLYPQIDENKCVQCGACQKVC 59


>gi|160932751|ref|ZP_02080140.1| hypothetical protein CLOLEP_01592 [Clostridium leptum DSM 753]
 gi|156867825|gb|EDO61197.1| hypothetical protein CLOLEP_01592 [Clostridium leptum DSM 753]
          Length = 270

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 27/85 (31%), Gaps = 11/85 (12%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +  +       +         +  CI C  C   C + A+T+               
Sbjct: 188 VPLKPQAVVRCSNCDKGGVTRKLCKVGCIGCMKCVKACESGAVTVNQFKAS--------- 238

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVE 120
             +D  KC  CG C E CP D I  
Sbjct: 239 --VDPAKCTACGKCVEVCPQDCIRM 261



 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 11/60 (18%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+    C A+C   AI + +G              ID  +C  C  C +ACP   I   P
Sbjct: 141 CMGLGDCAAVCEYDAIKVCNGVAS-----------IDPNRCKGCSKCVQACPKHLISFVP 189


>gi|78189918|ref|YP_380256.1| Fe-S-cluster-containing hydrogenase components 1-like [Chlorobium
           chlorochromatii CaD3]
 gi|78172117|gb|ABB29213.1| Fe-S-cluster-containing hydrogenase components 1-like protein
           [Chlorobium chlorochromatii CaD3]
          Length = 517

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 28/85 (32%), Gaps = 16/85 (18%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           EKG      R    LR     E  C+       ICP +A+            R       
Sbjct: 41  EKGMFPESRRYFTVLRCNHCAEPPCV------DICPVEALHKREDGIVDFDKR------- 87

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPN 123
              +CI C  C +ACP  A+   P 
Sbjct: 88  ---RCIGCKACAQACPYGALYIDPE 109



 Score = 42.0 bits (97), Expect = 0.027,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 37/123 (30%), Gaps = 14/123 (11%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLR--YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59
           R +   V      E    +F  LR  +  +       P E    +   R +  +      
Sbjct: 34  RTWVKYVEKGMFPESRR-YFTVLRCNHCAEPPCVDICPVE----ALHKREDGIVDFDK-- 86

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
             RCI CK C   CP  A+ I+                   +K      C   CP  AIV
Sbjct: 87  -RRCIGCKACAQACPYGALYIDPETHTSAKCNYCAHRKEVGMK----PACVVICPQQAIV 141

Query: 120 EGP 122
            G 
Sbjct: 142 SGD 144


>gi|328706442|ref|XP_001944849.2| PREDICTED: dihydropyrimidine dehydrogenase [NADP+]-like
            [Acyrthosiphon pisum]
          Length = 1297

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 23/75 (30%), Gaps = 7/75 (9%)

Query: 59   GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117
             E+ CI C  C   C       +SG +      ++    +    C  C LC   CP+   
Sbjct: 1185 NEDSCINCGKCYMACN------DSGYQAITMDPKSHAVHVQPDSCTGCTLCLTVCPIPGC 1238

Query: 118  IVEGPNFEFATETRQ 132
            I            R 
Sbjct: 1239 ISMVEKTVPHVVNRG 1253


>gi|301064114|ref|ZP_07204561.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit A family
           protein [delta proteobacterium NaphS2]
 gi|300441734|gb|EFK06052.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit A family
           protein [delta proteobacterium NaphS2]
          Length = 912

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 21/62 (33%), Gaps = 9/62 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E+C  C  C   CP Q   I+                ID   C  CG+C   CP  AI
Sbjct: 841 NTEKCAVCCTCVRTCPFQIPVIDREIGAAF---------IDASLCRGCGMCVAECPGKAI 891

Query: 119 VE 120
             
Sbjct: 892 FM 893


>gi|251791771|ref|YP_003006492.1| putative oxidoreductase Fe-S binding subunit [Dickeya zeae Ech1591]
 gi|247540392|gb|ACT09013.1| glutamate synthase, small subunit [Dickeya zeae Ech1591]
          Length = 667

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 31/86 (36%), Gaps = 15/86 (17%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRR 92
            YP  +    PR R  H  +   +    C  C    C  +CP QA+            R+
Sbjct: 30  RYPENRDDFHPRIRVFH--QGEQHTAVTCRHCEDSPCANVCPTQALV-----------RK 76

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAI 118
                +   KCI C  C  ACP  AI
Sbjct: 77  QDGIQLVAEKCIGCKTCVLACPFGAI 102



 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 11/75 (14%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC---GLCQEACPVDA 117
           E+CI CK C   CP  AIT+E+  +     +           CI       C EACP  A
Sbjct: 85  EKCIGCKTCVLACPFGAITVENQAQGATAHK--------CDLCIGRPEGQACVEACPTQA 136

Query: 118 IVEGPNFEFATETRQ 132
           +          + R+
Sbjct: 137 LQLVSEHSLEEQRRE 151



 Score = 37.4 bits (85), Expect = 0.70,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 19/66 (28%), Gaps = 6/66 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY----DIDMIKCIYCGL--CQEA 112
             + CI C  CE  C              D   R   +        + C +C    C   
Sbjct: 8   NAKDCIGCNACEIACVISHNHGRYPENRDDFHPRIRVFHQGEQHTAVTCRHCEDSPCANV 67

Query: 113 CPVDAI 118
           CP  A+
Sbjct: 68  CPTQAL 73


>gi|297587233|ref|ZP_06945878.1| NAD-dependent formate dehydrogenase [Finegoldia magna ATCC 53516]
 gi|297575214|gb|EFH93933.1| NAD-dependent formate dehydrogenase [Finegoldia magna ATCC 53516]
          Length = 355

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 3/63 (4%)

Query: 59  GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115
            + +CI C  C  +C   Q             +  +  +D+ + K  C  CG C   CP 
Sbjct: 149 DQNKCILCGKCVRVCEEVQCTHTIDFKNRGFDSYISTAFDLPLSKENCRMCGQCISVCPT 208

Query: 116 DAI 118
            A+
Sbjct: 209 GAL 211


>gi|255659849|ref|ZP_05405258.1| putative glutamate synthase, iron-sulfur cluster-binding subunit
           [Mitsuokella multacida DSM 20544]
 gi|260847926|gb|EEX67933.1| putative glutamate synthase, iron-sulfur cluster-binding subunit
           [Mitsuokella multacida DSM 20544]
          Length = 543

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 34/96 (35%), Gaps = 18/96 (18%)

Query: 54  RRYPNGEERCIACKLCEAICPA---------QAITIESGPRCHDGTRRTVRYDIDM---- 100
                  +RC  C  C A C           Q++T+   P         VR  I      
Sbjct: 16  WIIEYHPDRCTMCGSCVASCSFKSIKVAVRGQSLTVSEKPVPEPKKIHRVRPVIKQVASL 75

Query: 101 -IKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
              C  CG+C++ CP DAI    N     +TR+ L 
Sbjct: 76  TDFCRGCGICEKVCPNDAIHPVRN----PDTRKTLL 107


>gi|223558019|gb|ACM91025.1| NADH:ubiquinone oxidoreductase subunit [uncultured bacterium URE4]
          Length = 597

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 10/68 (14%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            AL++Y     +C  C  C   CP  AI+                + I+ + CI CG C 
Sbjct: 537 KALKKYMIDPAKCKGCTACARACPVSAISGTLK----------NPHVINQLDCIKCGTCV 586

Query: 111 EACPVDAI 118
           E C   AI
Sbjct: 587 EKCKFGAI 594



 Score = 41.6 bits (96), Expect = 0.036,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 16/43 (37%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            +          +   +Y ID  KC  C  C  ACPV AI   
Sbjct: 525 HVTEKKCRAGQCKALKKYMIDPAKCKGCTACARACPVSAISGT 567


>gi|187776517|ref|ZP_02992990.1| hypothetical protein CLOSPO_00014 [Clostridium sporogenes ATCC
           15579]
 gi|187775176|gb|EDU38978.1| hypothetical protein CLOSPO_00014 [Clostridium sporogenes ATCC
           15579]
          Length = 392

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           E+CI C  C  +CP +   I+   +             +M KCI C  CQE CP  AI
Sbjct: 324 EKCIGCSRCAEVCPEKPYVIDMIKKGDKKIPVW-----NMKKCIRCFCCQELCPKGAI 376


>gi|167760479|ref|ZP_02432606.1| hypothetical protein CLOSCI_02853 [Clostridium scindens ATCC 35704]
 gi|167661845|gb|EDS05975.1| hypothetical protein CLOSCI_02853 [Clostridium scindens ATCC 35704]
          Length = 253

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 31/94 (32%), Gaps = 12/94 (12%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
             K      +R  + +   P    +C +C  C A CP  AI  ++               
Sbjct: 156 ELKVPGKMPYREYNGVPFKPKARSKCTSCGKCAAECPVGAIPKDA------------PST 203

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           +D  KCI C  C   CP  A   G     A   +
Sbjct: 204 VDDKKCISCMRCVAICPYGARTLGKVMLLAASQK 237


>gi|121534100|ref|ZP_01665925.1| electron transport complex, RnfABCDGE type, B subunit [Thermosinus
           carboxydivorans Nor1]
 gi|121307203|gb|EAX48120.1| electron transport complex, RnfABCDGE type, B subunit [Thermosinus
           carboxydivorans Nor1]
          Length = 296

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 22/67 (32%), Gaps = 10/67 (14%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           +   +  C+    C   C   AIT+                 ID  KC  CG C+  CP 
Sbjct: 135 FKTCKYGCLGLGTCAKNCTFNAITMSPDGLPV----------IDPDKCTGCGKCETVCPK 184

Query: 116 DAIVEGP 122
             I   P
Sbjct: 185 QVITMMP 191



 Score = 42.0 bits (97), Expect = 0.028,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIES-----GPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
             ++C  C  CE +CP Q IT+          C+   +  V      + CI C LC   C
Sbjct: 168 DPDKCTGCGKCETVCPKQVITMMPLGARVRVNCNSKDKGAVARKACSVACIGCSLCAREC 227

Query: 114 PVDAIVEGPN 123
           P  AI    N
Sbjct: 228 PHGAIKIENN 237


>gi|126699129|ref|YP_001088026.1| putative iron-sulfur protein [Clostridium difficile 630]
 gi|255306494|ref|ZP_05350665.1| putative iron-sulfur protein [Clostridium difficile ATCC 43255]
 gi|115250566|emb|CAJ68390.1| putative iron-sulfur protein [Clostridium difficile]
          Length = 382

 Score = 44.7 bits (104), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 11/67 (16%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            + CI C  C+  CPA  I I +               ID+ KCI C  C E CP  AI 
Sbjct: 323 FQDCIKCGKCKEACPASTIEIGTKGAI-----------IDLSKCIRCYCCHELCPKKAID 371

Query: 120 EGPNFEF 126
              NF F
Sbjct: 372 VKRNFVF 378


>gi|323487463|ref|ZP_08092758.1| 4Fe-4S ferredoxin [Clostridium symbiosum WAL-14163]
 gi|323692307|ref|ZP_08106546.1| 4Fe-4S ferredoxin [Clostridium symbiosum WAL-14673]
 gi|323399232|gb|EGA91635.1| 4Fe-4S ferredoxin [Clostridium symbiosum WAL-14163]
 gi|323503632|gb|EGB19455.1| 4Fe-4S ferredoxin [Clostridium symbiosum WAL-14673]
          Length = 295

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 23/72 (31%), Gaps = 12/72 (16%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
            +R    +   P  +  C  C LC   CPA AI  E                    KCI 
Sbjct: 207 PYREYGGVPFKPEADNSCTGCGLCAKECPAGAIPAEKPSSVDK------------EKCIS 254

Query: 106 CGLCQEACPVDA 117
           C  C   CP  A
Sbjct: 255 CMRCVSVCPRHA 266



 Score = 34.3 bits (77), Expect = 6.3,   Method: Composition-based stats.
 Identities = 9/17 (52%), Positives = 10/17 (58%)

Query: 103 CIYCGLCQEACPVDAIV 119
           C  CGLC + CP  AI 
Sbjct: 224 CTGCGLCAKECPAGAIP 240


>gi|317479124|ref|ZP_07938264.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 4_1_36]
 gi|316904696|gb|EFV26510.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 4_1_36]
          Length = 300

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 27/81 (33%), Gaps = 8/81 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------DMIKCIYCGLCQ 110
            EE+C AC  C   CP   I I    +                       + CI CG C 
Sbjct: 169 DEEKCTACGACAKACPKSIIEIRPQGKKSRRIYVQCVNKDKGAVARKACTVACIGCGKCV 228

Query: 111 EACPVDAIVEGPNFEFATETR 131
           + CP +AI    N  +    +
Sbjct: 229 KVCPFEAITLENNLAYIDPNK 249



 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 9/65 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C+ C  C A C   AI +                ++D  KC  CG C +ACP   I
Sbjct: 138 CSYGCLGCGDCVAACQFDAIHMNPETGLP---------EVDEEKCTACGACAKACPKSII 188

Query: 119 VEGPN 123
              P 
Sbjct: 189 EIRPQ 193



 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 11/60 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI C  C  +CP +AIT+E+               ID  KC  C  C+EACP + I
Sbjct: 217 CTVACIGCGKCVKVCPFEAITLENNLAY-----------IDPNKCKSCRKCEEACPQNTI 265


>gi|319795810|ref|YP_004157450.1| formate dehydrogenase, alpha subunit [Variovorax paradoxus EPS]
 gi|315598273|gb|ADU39339.1| formate dehydrogenase, alpha subunit [Variovorax paradoxus EPS]
          Length = 958

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 22/69 (31%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     SG                  +C+ CG C E
Sbjct: 160 YFTYDPSKCIVCNRCVRACEETQGTFALTISGRGFESRVSPGQDEAFMESECVSCGACVE 219

Query: 112 ACPVDAIVE 120
           ACP   + E
Sbjct: 220 ACPTATLQE 228


>gi|300853892|ref|YP_003778876.1| NADH dehydrogenase I subunit F [Clostridium ljungdahlii DSM 13528]
 gi|300434007|gb|ADK13774.1| NADH dehydrogenase I, F subunit [Clostridium ljungdahlii DSM 13528]
          Length = 599

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 10/68 (14%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             L  +   E++C  C +C+  CPA  IT E              + ID  KC+ CG C 
Sbjct: 539 KKLTTFGIDEDKCKGCDMCKKNCPADCITGEIKKP----------HTIDADKCLRCGNCM 588

Query: 111 EACPVDAI 118
             C  DA+
Sbjct: 589 NICKFDAV 596



 Score = 35.1 bits (79), Expect = 3.0,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 19/40 (47%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            I++        ++   + ID  KC  C +C++ CP D I
Sbjct: 527 HIKNKRCRAGVCKKLTTFGIDEDKCKGCDMCKKNCPADCI 566


>gi|300121889|emb|CBK22463.2| unnamed protein product [Blastocystis hominis]
          Length = 1181

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 17/91 (18%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG   +    N ++ C  C  C +ICP               +A    +         + 
Sbjct: 670 RGMATIVPVWN-KDTCTQCNQCASICPHSVIRPFLMDAEETKKAPASFTYLPAVGDELKG 728

Query: 94  VRYDID--MIKCIYCGLCQEACPVDAIVEGP 122
           + + I    + C  C +C   CP +++   P
Sbjct: 729 LNFTIQASPLDCTGCEVCATVCPTESLKMEP 759


>gi|294141107|ref|YP_003557085.1| electron transport complex protein rnfB [Shewanella violacea DSS12]
 gi|293327576|dbj|BAJ02307.1| electron transport complex protein rnfB [Shewanella violacea DSS12]
          Length = 189

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 25/82 (30%), Gaps = 10/82 (12%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100
                        +     E+ CI C  C   CP  AI               + + +  
Sbjct: 92  PEPLTATEEVQVKKVAYIREDECIGCTKCIQACPVDAILGAGK----------LMHTVIT 141

Query: 101 IKCIYCGLCQEACPVDAIVEGP 122
             C  C LC E CPVD I   P
Sbjct: 142 DYCTGCDLCVEPCPVDCIDMLP 163


>gi|256810207|ref|YP_003127576.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus fervens AG86]
 gi|256793407|gb|ACV24076.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus fervens AG86]
          Length = 657

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 29/80 (36%), Gaps = 7/80 (8%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAIT-------IESGPRCHDGTRRTVRYDI 98
            F      +     E+ C  C  C A+CP +                        + Y I
Sbjct: 228 NFEVTIEKKPRYVDEDVCTGCGACAAVCPIEVPNEFDLGLGTRKAIYVPFPQAVPLIYTI 287

Query: 99  DMIKCIYCGLCQEACPVDAI 118
           DM  CI CGLC++AC   AI
Sbjct: 288 DMEHCIRCGLCEKACGPGAI 307



 Score = 42.0 bits (97), Expect = 0.031,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 7/71 (9%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
              + R    E+ C  C++C  +CP  AI+              +   ++ + C  CG C
Sbjct: 570 RIEMIRAVVDEDVCGGCQVCAKMCPYNAISYVEKD-------GHLVAQVNDVACKGCGAC 622

Query: 110 QEACPVDAIVE 120
             ACP  A+  
Sbjct: 623 AGACPSGAMQL 633


>gi|269122350|ref|YP_003310527.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sebaldella
           termitidis ATCC 33386]
 gi|268616228|gb|ACZ10596.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sebaldella
           termitidis ATCC 33386]
          Length = 276

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 39/104 (37%), Gaps = 22/104 (21%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
             KG+    +R   A+   P+ ++ C  C LC  ICP  AI+ E   +            
Sbjct: 182 EVKGNFP--YREPAAIPLNPSVQKTCRKCGLCAGICPVNAISTEQPEK------------ 227

Query: 98  IDMIKCIYCGLCQEACPVDAIVE--------GPNFEFATETRQE 133
           I+   CI C  C  ACP ++              FE     R+E
Sbjct: 228 INRKVCIRCTACFTACPTNSRGFSGVRYALASKIFEKKFSARRE 271


>gi|160890331|ref|ZP_02071334.1| hypothetical protein BACUNI_02772 [Bacteroides uniformis ATCC 8492]
 gi|156860063|gb|EDO53494.1| hypothetical protein BACUNI_02772 [Bacteroides uniformis ATCC 8492]
          Length = 300

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 27/81 (33%), Gaps = 8/81 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------DMIKCIYCGLCQ 110
            EE+C AC  C   CP   I I    +                       + CI CG C 
Sbjct: 169 DEEKCTACGACAKACPKSIIEIRPQGKKSRRIYVQCVNKDKGAVARKACTVACIGCGKCV 228

Query: 111 EACPVDAIVEGPNFEFATETR 131
           + CP +AI    N  +    +
Sbjct: 229 KVCPFEAITLENNLAYIDPNK 249



 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 9/65 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C+ C  C A C   AI +                ++D  KC  CG C +ACP   I
Sbjct: 138 CSYGCLGCGDCVAACQFDAIHMNPETGLP---------EVDEEKCTACGACAKACPKSII 188

Query: 119 VEGPN 123
              P 
Sbjct: 189 EIRPQ 193



 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 11/60 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI C  C  +CP +AIT+E+               ID  KC  C  C+EACP + I
Sbjct: 217 CTVACIGCGKCVKVCPFEAITLENNLAY-----------IDPNKCKSCRKCEEACPQNTI 265


>gi|152990044|ref|YP_001355766.1| NADH dehydrogenase subunit G [Nitratiruptor sp. SB155-2]
 gi|151421905|dbj|BAF69409.1| NADH-quinone oxidoreductase, chain G [Nitratiruptor sp. SB155-2]
          Length = 827

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/114 (16%), Positives = 32/114 (28%), Gaps = 24/114 (21%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
            +  +    +R              CI C+ C  +C               G +    + 
Sbjct: 121 EQHYAIRDTYRPVKKWNFIHYDSSLCIVCERCVTVCKDMIGDAALKTVPRGGDKLGKEWK 180

Query: 98  IDMIK-----------------------CIYCGLCQEACPVDAIVEGPNFEFAT 128
            +M K                       C +CG C   CPV A+V   ++ + T
Sbjct: 181 DEMPKDAYAMWNKLQKSIIGAVTGEELDCTWCGECISVCPVGALV-SEDYHYTT 233


>gi|121609340|ref|YP_997147.1| formate dehydrogenase subunit alpha [Verminephrobacter eiseniae
           EF01-2]
 gi|121553980|gb|ABM58129.1| formate dehydrogenase, alpha subunit [Verminephrobacter eiseniae
           EF01-2]
          Length = 959

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 22/75 (29%), Gaps = 3/75 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     SG                  +C+ CG C  
Sbjct: 161 YFSYDASKCIVCNRCVRACEETQGTFALTISGRGFAARVSAGQDQPFMESECVSCGACVN 220

Query: 112 ACPVDAIVEGPNFEF 126
            CP  ++ E    E 
Sbjct: 221 VCPTASLQEKTVIEL 235


>gi|254975082|ref|ZP_05271554.1| putative iron-sulfur protein [Clostridium difficile QCD-66c26]
 gi|255092471|ref|ZP_05321949.1| putative iron-sulfur protein [Clostridium difficile CIP 107932]
 gi|255314210|ref|ZP_05355793.1| putative iron-sulfur protein [Clostridium difficile QCD-76w55]
 gi|255516888|ref|ZP_05384564.1| putative iron-sulfur protein [Clostridium difficile QCD-97b34]
 gi|255649989|ref|ZP_05396891.1| putative iron-sulfur protein [Clostridium difficile QCD-37x79]
 gi|260683140|ref|YP_003214425.1| putative iron-sulfur protein [Clostridium difficile CD196]
 gi|260686738|ref|YP_003217871.1| putative iron-sulfur protein [Clostridium difficile R20291]
 gi|306520065|ref|ZP_07406412.1| putative iron-sulfur protein [Clostridium difficile QCD-32g58]
 gi|260209303|emb|CBA62685.1| putative iron-sulfur protein [Clostridium difficile CD196]
 gi|260212754|emb|CBE03883.1| putative iron-sulfur protein [Clostridium difficile R20291]
          Length = 382

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 11/67 (16%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            + CI C  C+  CPA  I I +               ID+ KCI C  C E CP  AI 
Sbjct: 323 FQDCIKCGKCKEACPASTIEIGTKGAI-----------IDLSKCIRCYCCHELCPKKAID 371

Query: 120 EGPNFEF 126
              NF F
Sbjct: 372 VKRNFVF 378


>gi|88603096|ref|YP_503274.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methanospirillum hungatei
           JF-1]
 gi|88188558|gb|ABD41555.1| formylmethanofuran dehydrogenase, subunit F [Methanospirillum
           hungatei JF-1]
          Length = 388

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
             E  C  C +C   CP++AI +    R   G ++    +I    C  C  C   CP +A
Sbjct: 207 WDEAYCDGCNVCAEACPSEAIKVT---RTVVGQKKLGNVNIIDEDCCTCRWCAINCPTEA 263

Query: 118 IVEGPNFE 125
           I     FE
Sbjct: 264 ITVNKIFE 271



 Score = 42.4 bits (98), Expect = 0.019,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 32/86 (37%), Gaps = 5/86 (5%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT-IESGPRCHDGTRR 92
           IN P E  + +  F GE               C  C  +CPA AI      P      + 
Sbjct: 257 INCPTEAITVNKIFEGEITFHAEKCPGG----CSTCVDVCPANAIYLPTPKPAKDMKGQI 312

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAI 118
             +  ++   CI CG C  ACP + I
Sbjct: 313 EAKIAVNKDFCILCGACVNACPGEDI 338



 Score = 42.0 bits (97), Expect = 0.025,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 29/86 (33%), Gaps = 9/86 (10%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P E    +    G+  L      +E C  C+ C   CP +AIT+               
Sbjct: 222 CPSEAIKVTRTVVGQKKLGNVNIIDEDCCTCRWCAINCPTEAITVNKIFEGEI------- 274

Query: 96  YDIDMIKCI-YCGLCQEACPVDAIVE 120
                 KC   C  C + CP +AI  
Sbjct: 275 -TFHAEKCPGGCSTCVDVCPANAIYL 299



 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 1/74 (1%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR-YDIDMIKCIYC 106
           R    +       + C  C +C  +CP +AI++ +      G         +D  KC YC
Sbjct: 22  RLLQQVNNLILDNDICTGCGICSEVCPEEAISVGAVGGVRRGLVDDAASIHVDETKCSYC 81

Query: 107 GLCQEACPVDAIVE 120
           G+C   CP  A+  
Sbjct: 82  GVCVIMCPFSALAL 95



 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 10/86 (11%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRC-------HDGTRRTVRYDIDMIKCIYCGLC 109
              E +C  C +C  +CP  A+ ++                       ID  KC+ C +C
Sbjct: 72  HVDETKCSYCGVCVIMCPFSALALKVDGEERLPILEKEGFPTYDKGTAIDQDKCVRCNIC 131

Query: 110 QEACPVDAI-VEGPNFEFATETRQEL 134
            + CP DAI  + P FE   E ++ L
Sbjct: 132 DDVCPRDAIDRDVPLFE--GEDKEGL 155



 Score = 35.1 bits (79), Expect = 3.0,   Method: Composition-based stats.
 Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 9/94 (9%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE---------SGPRCHD 88
            E+     +       +     +++C+ C +C+ +CP  AI  +          G     
Sbjct: 100 EERLPILEKEGFPTYDKGTAIDQDKCVRCNICDDVCPRDAIDRDVPLFEGEDKEGLAKGQ 159

Query: 89  GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                + + +D  KC  CG+C   C    ++  P
Sbjct: 160 AVELKIEFKVDDEKCTKCGICGNLCEAINVLHKP 193


>gi|88799770|ref|ZP_01115344.1| Ferredoxin-type protein NapF [Reinekea sp. MED297]
 gi|88777504|gb|EAR08705.1| Ferredoxin-type protein NapF [Reinekea sp. MED297]
          Length = 182

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/106 (18%), Positives = 29/106 (27%), Gaps = 31/106 (29%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY----------- 96
           RG+            CI C  C   C   A+  ++ P      +   +            
Sbjct: 62  RGDGGFPELSFQNNACIGCGDCVEACEPGALQSDADPWPVGQWQVNDQCLPQQGVSCRSC 121

Query: 97  --------------------DIDMIKCIYCGLCQEACPVDAIVEGP 122
                               ++D  +C  CG C   CP DAI   P
Sbjct: 122 QDACETSAIRFPMTSAVPSPELDASQCTACGACVSVCPTDAIAIQP 167



 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 14/59 (23%), Positives = 18/59 (30%), Gaps = 8/59 (13%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           ++C  C  C+  C               G             CI CG C EAC   A+ 
Sbjct: 43  DQCTRCGECQVAC--------PEAIIVRGDGGFPELSFQNNACIGCGDCVEACEPGALQ 93


>gi|189500466|ref|YP_001959936.1| electron transport complex, RnfABCDGE type, C subunit [Chlorobium
           phaeobacteroides BS1]
 gi|189495907|gb|ACE04455.1| electron transport complex, RnfABCDGE type, C subunit [Chlorobium
           phaeobacteroides BS1]
          Length = 441

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/89 (20%), Positives = 27/89 (30%), Gaps = 3/89 (3%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
              KA  T++ P  K ++   F     + +       CI C  C  +CP           
Sbjct: 331 MMGKAVYTLDVPIIKTTSGMLFINNVGIEKARE--RTCIRCGKCVDVCPQGLAPWLLA-N 387

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                       + +  C  CG C   CP
Sbjct: 388 VAQLREFDEIQLLSLANCTECGSCTYVCP 416


>gi|326383750|ref|ZP_08205435.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Gordonia neofelifaecis NRRL B-59395]
 gi|326197514|gb|EGD54703.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Gordonia neofelifaecis NRRL B-59395]
          Length = 506

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 3/45 (6%)

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
              I      R   G   +    ID   CI CG C +ACPVDAI 
Sbjct: 1   MNCIHPTPEER---GFGTSDILHIDPEACIDCGACADACPVDAIF 42


>gi|308272002|emb|CBX28610.1| hypothetical protein N47_G39340 [uncultured Desulfobacterium sp.]
          Length = 1018

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 4/58 (6%)

Query: 63   CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            C +C +C +ICP  A +           +     +I+   C  CGLC  +C   AI  
Sbjct: 950  CSSCGVCVSICPYSAPSFIEETARFFPGKA----NINPALCKGCGLCVASCRSGAIRL 1003



 Score = 40.5 bits (93), Expect = 0.073,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 12/79 (15%)

Query: 57  PNGEERCIACKLCEAIC-------PAQAITIESGPRCHDGTRRTVRYDIDMIKCIY---- 105
                +CIAC LC   C          +++              ++Y ID   C++    
Sbjct: 111 YVDMNKCIACGLCAEKCPKKVINEYDGSLSKRKAIYVKYAQAVPLKYAIDPDNCLFLTKG 170

Query: 106 -CGLCQEACPVDAIVEGPN 123
            C  C++ CP DAI     
Sbjct: 171 KCRACEKFCPADAINFDDQ 189



 Score = 37.8 bits (86), Expect = 0.58,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
                    ++  RY +DM KCI CGLC E CP   I     ++ +   R+   Y K
Sbjct: 97  DEGNFEVSLKQYPRY-VDMNKCIACGLCAEKCPKKVI---NEYDGSLSKRK-AIYVK 148


>gi|303247925|ref|ZP_07334192.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfovibrio
           fructosovorans JJ]
 gi|302490649|gb|EFL50552.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfovibrio
           fructosovorans JJ]
          Length = 767

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 21/70 (30%), Gaps = 10/70 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L        RC  CK C   CP  A+  +                 +  +C  CG C  A
Sbjct: 550 LSYPVFNFVRCTQCKRCTEECPFGALDDDEKGTPKP----------NPTRCRRCGTCMGA 599

Query: 113 CPVDAIVEGP 122
           CP   I    
Sbjct: 600 CPERVISFDN 609


>gi|288924962|ref|ZP_06418898.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Prevotella buccae
           D17]
 gi|288338152|gb|EFC76502.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Prevotella buccae
           D17]
          Length = 1193

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 26/82 (31%), Gaps = 16/82 (19%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTR------------R 92
           RG  A        E CI C  C  +CP   I     +   +                   
Sbjct: 678 RGVAAFVPTW-ASENCIQCNKCSYVCPHACIRPFVLDENEKAGFNEPTLDVLAPKQLKGM 736

Query: 93  TVRYDIDMIKCIYCGLCQEACP 114
             R ++ ++ C  CG C + CP
Sbjct: 737 QFRIEVSVLDCTGCGNCADVCP 758


>gi|262393720|ref|YP_003285574.1| electron transport complex protein RnfC [Vibrio sp. Ex25]
 gi|262337314|gb|ACY51109.1| electron transport complex protein RnfC [Vibrio sp. Ex25]
          Length = 916

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 12/103 (11%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C  C   CPA  +  +               ++++  CI CG C   CP  
Sbjct: 372 HQHEMECIRCSQCAEACPAS-LLPQQLQWHAKAEEYDKLEELNLKDCIECGACAFVCP-S 429

Query: 117 AIVEGPNF-----EFATETRQELYYDKERLLNNGDRWESEIVR 154
            I     +     E  T T++    ++ +L     R+E +  R
Sbjct: 430 EIPLVQYYRQAKAEIRTRTQEAEAAERAKL-----RFEEKKAR 467


>gi|254480710|ref|ZP_05093957.1| 4Fe-4S binding domain protein [marine gamma proteobacterium
           HTCC2148]
 gi|214039293|gb|EEB79953.1| 4Fe-4S binding domain protein [marine gamma proteobacterium
           HTCC2148]
          Length = 593

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 27/95 (28%), Gaps = 20/95 (21%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV------------- 94
           R  +   +    E RCI C  C  ICP   I+  +                         
Sbjct: 488 RCLNCDIQTVFEEVRCIECDACVDICPTDCISFIANQEEEHLRVALTAPASNLAQDLYVS 547

Query: 95  -------RYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                      D   C++CGLC E CP  A     
Sbjct: 548 EELPTKRVMVKDENVCLHCGLCAERCPTSAWDMQK 582



 Score = 37.0 bits (84), Expect = 0.96,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 18/56 (32%), Gaps = 2/56 (3%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           E      A T                ++   ++CI C  C + CP D I    N E
Sbjct: 472 EVELGFDATTGYKEAERCLNCDIQTVFE--EVRCIECDACVDICPTDCISFIANQE 525


>gi|195479863|ref|XP_002101056.1| GE17405 [Drosophila yakuba]
 gi|194188580|gb|EDX02164.1| GE17405 [Drosophila yakuba]
          Length = 1031

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 18/65 (27%), Gaps = 8/65 (12%)

Query: 59   GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP-VDA 117
             ++ CI C  C   C                  +          C  C LC   CP +D 
Sbjct: 949  DDDMCINCGKCYMTCA-------DSGYQAIEFDKDTHIPHVNNDCTGCTLCVSVCPIIDC 1001

Query: 118  IVEGP 122
            I   P
Sbjct: 1002 ITMVP 1006


>gi|154705703|gb|ABS84237.1| putative dihydropyrimidine dehydrogenase [Delftia sp. I24]
          Length = 439

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 11/66 (16%)

Query: 59  GEERCIACKLCEAICP---AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
            ++ CI C  C   C     QAIT               R+++D  +C+ C LC   CPV
Sbjct: 342 NQDSCIQCGRCHVACEDTSHQAITFSKEGGV-------RRFEVDDTECVGCNLCVSICPV 394

Query: 116 D-AIVE 120
              I  
Sbjct: 395 PECITM 400


>gi|163748761|ref|ZP_02156013.1| Hypothetical pyruvate formate lyase activating enzyme [Shewanella
           benthica KT99]
 gi|161331535|gb|EDQ02340.1| Hypothetical pyruvate formate lyase activating enzyme [Shewanella
           benthica KT99]
          Length = 307

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 7/70 (10%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
             P+   +C +C LC   CPAQA+++                  D   CI C  C +ACP
Sbjct: 55  HNPHTIGQCDSCGLCIPSCPAQALSLHETDGSGLIHW-------DKDLCIECDACLQACP 107

Query: 115 VDAIVEGPNF 124
             A  +   +
Sbjct: 108 KQASPKTRQY 117


>gi|150006371|ref|YP_001301115.1| ferredoxin [Bacteroides vulgatus ATCC 8482]
 gi|254881723|ref|ZP_05254433.1| ferredoxin [Bacteroides sp. 4_3_47FAA]
 gi|294776232|ref|ZP_06741717.1| ferredoxin [Bacteroides vulgatus PC510]
 gi|319643688|ref|ZP_07998305.1| electron transport complex protein RnfB [Bacteroides sp. 3_1_40A]
 gi|149934795|gb|ABR41493.1| electron transport complex protein RnfB [Bacteroides vulgatus ATCC
           8482]
 gi|254834516|gb|EET14825.1| ferredoxin [Bacteroides sp. 4_3_47FAA]
 gi|294449915|gb|EFG18430.1| ferredoxin [Bacteroides vulgatus PC510]
 gi|317384718|gb|EFV65680.1| electron transport complex protein RnfB [Bacteroides sp. 3_1_40A]
          Length = 317

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 27/76 (35%), Gaps = 8/76 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------DMIKCIYCGLCQ 110
            EE+C AC  C   CP + I I    + +                       CI CG C 
Sbjct: 172 DEEKCTACGACSKACPRKIIEIRPKGKNNRRVVVMCVNKDKGAVANKACKASCIGCGKCV 231

Query: 111 EACPVDAIVEGPNFEF 126
           + CP +AI    N  +
Sbjct: 232 KVCPFEAITLENNLAY 247



 Score = 41.2 bits (95), Expect = 0.046,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 9/60 (15%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+ C  C   C   AI +                ++D  KC  CG C +ACP   I   P
Sbjct: 145 CLGCGDCVEACQFDAIHMNPETGLP---------EVDEEKCTACGACSKACPRKIIEIRP 195



 Score = 39.3 bits (90), Expect = 0.16,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 11/61 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +  CI C  C  +CP +AIT+E+               ID  KC  C  C+  CP  AI
Sbjct: 220 CKASCIGCGKCVKVCPFEAITLENNLAY-----------IDPAKCKSCRKCESECPKGAI 268

Query: 119 V 119
            
Sbjct: 269 Q 269



 Score = 35.5 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 103 CIYCGLCQEACPVDAIVEGPN 123
           C+ CG C EAC  DAI   P 
Sbjct: 145 CLGCGDCVEACQFDAIHMNPE 165


>gi|148652690|ref|YP_001279783.1| electron transport complex, RnfABCDGE type subunit B [Psychrobacter
           sp. PRwf-1]
 gi|148571774|gb|ABQ93833.1| electron transport complex, RnfABCDGE type, B subunit
           [Psychrobacter sp. PRwf-1]
          Length = 275

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 23/79 (29%), Gaps = 10/79 (12%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
                  G     R    E+ CI C  C   CP  AI                 + I   
Sbjct: 94  WPVDAHTGRPTEVRAIIREDDCIGCTKCIPACPVDAIIGTGK----------HMHTIFTD 143

Query: 102 KCIYCGLCQEACPVDAIVE 120
            C  C LC   CPVD I  
Sbjct: 144 LCTGCELCLAPCPVDCIDL 162



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/50 (34%), Positives = 19/50 (38%)

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
           +     H G    VR  I    CI C  C  ACPVDAI+          T
Sbjct: 93  QWPVDAHTGRPTEVRAIIREDDCIGCTKCIPACPVDAIIGTGKHMHTIFT 142


>gi|50426955|ref|XP_462080.1| DEHA2G12518p [Debaryomyces hansenii CBS767]
 gi|49657750|emb|CAG90566.1| DEHA2G12518p [Debaryomyces hansenii]
          Length = 607

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 25/56 (44%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           K C+  C      +++G  C + T  +    I    CI CG+C + CP DAI    
Sbjct: 19  KKCKQECRKACPVVKTGKLCIEVTPTSKIAFISETLCIGCGICVKKCPFDAINIIN 74


>gi|332879377|ref|ZP_08447074.1| ferredoxin [Capnocytophaga sp. oral taxon 329 str. F0087]
 gi|332682797|gb|EGJ55697.1| ferredoxin [Capnocytophaga sp. oral taxon 329 str. F0087]
          Length = 318

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 29/83 (34%), Gaps = 11/83 (13%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P  +         +         +  CI C  C   CP +AIT+ +              
Sbjct: 198 PKNRRMVVMCVNRDKGAVANKVCKASCIGCGKCVKTCPFEAITLNNNLAY---------- 247

Query: 97  DIDMIKCIYCGLCQEACPVDAIV 119
            ID  KC  C  C+EACP  AI 
Sbjct: 248 -IDPEKCKLCRKCEEACPKGAIH 269



 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 27/76 (35%), Gaps = 8/76 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD--------IDMIKCIYCGLCQ 110
            EERC AC  C   CP + I +      +                  +    CI CG C 
Sbjct: 172 DEERCTACGACVKTCPRRVIELRPKGPKNRRMVVMCVNRDKGAVANKVCKASCIGCGKCV 231

Query: 111 EACPVDAIVEGPNFEF 126
           + CP +AI    N  +
Sbjct: 232 KTCPFEAITLNNNLAY 247



 Score = 33.9 bits (76), Expect = 7.6,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 9/60 (15%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+    C A C   A++I                ++D  +C  CG C + CP   I   P
Sbjct: 145 CLGGGDCVAACQFGALSINPETGLP---------EVDEERCTACGACVKTCPRRVIELRP 195


>gi|320100610|ref|YP_004176202.1| thiamine pyrophosphate TPP-binding domain-containing protein
           [Desulfurococcus mucosus DSM 2162]
 gi|319752962|gb|ADV64720.1| thiamine pyrophosphate TPP-binding domain-containing protein
           [Desulfurococcus mucosus DSM 2162]
          Length = 625

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 23/69 (33%), Gaps = 11/69 (15%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            Y     +C  C  C A     AI +  G              I +  C  CGLC   C 
Sbjct: 566 PYTVDPGKCTGCGACIAATGCPAIFLSEGKAV-----------IAVEDCTGCGLCARYCG 614

Query: 115 VDAIVEGPN 123
            +AI  G +
Sbjct: 615 FNAIKPGGD 623



 Score = 35.5 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 2/34 (5%)

Query: 91  RRTVRYDIDMIKCIYCGLCQEA--CPVDAIVEGP 122
           RRT  Y +D  KC  CG C  A  CP   + EG 
Sbjct: 562 RRTAPYTVDPGKCTGCGACIAATGCPAIFLSEGK 595


>gi|315428121|dbj|BAJ49707.1| coenzyme F420-dependent hydrogenase beta subunit [Candidatus
           Caldiarchaeum subterraneum]
          Length = 356

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 23/67 (34%), Gaps = 10/67 (14%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           RG+  +     G  RC  C  C  +CP            +            +  CI C 
Sbjct: 4   RGDQVIVDGVVGTGRCSGCAACVTVCPTNVFDYVEDHPVNT----------RLNHCIECD 53

Query: 108 LCQEACP 114
           LC EACP
Sbjct: 54  LCVEACP 60


>gi|290968440|ref|ZP_06559979.1| hydrogenase, Fe-dependent [Megasphaera genomosp. type_1 str. 28L]
 gi|290781436|gb|EFD94025.1| hydrogenase, Fe-dependent [Megasphaera genomosp. type_1 str. 28L]
          Length = 487

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 29/84 (34%), Gaps = 12/84 (14%)

Query: 46  RFRGEHALRRYPNGEERC------IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           + R +   RR P  E  C        CK C     A   T              +    D
Sbjct: 5   QSRFQQLQRRVPIDEHNCSVQFDVTKCKNCTMCLRACCNTQT------IMDYYYLPSTGD 58

Query: 100 MIKCIYCGLCQEACPVDAIVEGPN 123
           M  CI+CG C  ACP  AI E  +
Sbjct: 59  MPICIHCGQCAAACPFGAITEVND 82


>gi|317152782|ref|YP_004120830.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316943033|gb|ADU62084.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 1200

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 36/106 (33%), Gaps = 28/106 (26%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQA----------------ITIESGPRCHDGTRRTV 94
            A+       + CI C  C  +CP  A                       +  D    + 
Sbjct: 674 VAINVPEWIADNCIQCNQCAFVCPHSALRAVLADDAELKGAPASFATLEAKGKDVKGLSF 733

Query: 95  RYDIDMIKCIYCGLCQEACPV--DAIVEG----------PNFEFAT 128
           R  ++++ C+ CG C + CP    A+V            PNFEF+ 
Sbjct: 734 RLQVNVLDCLGCGNCADICPSKDKALVMQPIATQTGAQVPNFEFSE 779


>gi|255012541|ref|ZP_05284667.1| putative dehydrogenase [Bacteroides sp. 2_1_7]
 gi|298374570|ref|ZP_06984528.1| dehydrogenase [Bacteroides sp. 3_1_19]
 gi|298268938|gb|EFI10593.1| dehydrogenase [Bacteroides sp. 3_1_19]
          Length = 605

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 6/56 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            + +C  C  C  +C  +AIT ++              ++D  KC  CGLC++ CP
Sbjct: 6   DKSKCCGCNACGDVCTHKAITFKTDIEGFWYP------EVDKNKCTDCGLCEKVCP 55


>gi|242399359|ref|YP_002994783.1| 2-ketoisovalerate:ferredoxin oxidoreductase (VOR) subunit delta
           [Thermococcus sibiricus MM 739]
 gi|242265752|gb|ACS90434.1| 2-ketoisovalerate:ferredoxin oxidoreductase (VOR) subunit delta
           [Thermococcus sibiricus MM 739]
          Length = 105

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 31/87 (35%), Gaps = 10/87 (11%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P   G+T   F G+         E +CI C +C   CP  AI I+               
Sbjct: 27  PITLGTTLSNFTGDWRNFMPVVDESKCIKCYICWKFCPEPAIYIKEDGYVA--------- 77

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPN 123
            +D   C  CG+C   CP  AI     
Sbjct: 78  -VDYDYCKGCGICANECPTKAISMVRE 103


>gi|255655546|ref|ZP_05400955.1| putative iron-sulfur protein [Clostridium difficile QCD-23m63]
 gi|296451536|ref|ZP_06893271.1| probable iron-sulfur protein [Clostridium difficile NAP08]
 gi|296880115|ref|ZP_06904082.1| probable iron-sulfur protein [Clostridium difficile NAP07]
 gi|296259601|gb|EFH06461.1| probable iron-sulfur protein [Clostridium difficile NAP08]
 gi|296428840|gb|EFH14720.1| probable iron-sulfur protein [Clostridium difficile NAP07]
          Length = 382

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 11/67 (16%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            + CI C  C+  CPA  I I +               ID+ KCI C  C E CP  AI 
Sbjct: 323 FQDCIKCGKCKEACPAATIEIGTKGAI-----------IDLSKCIRCYCCHELCPKKAID 371

Query: 120 EGPNFEF 126
              NF F
Sbjct: 372 VKRNFVF 378


>gi|255101849|ref|ZP_05330826.1| pyruvate-flavodoxin oxidoreductase [Clostridium difficile
           QCD-63q42]
 gi|255307718|ref|ZP_05351889.1| pyruvate-flavodoxin oxidoreductase [Clostridium difficile ATCC
           43255]
          Length = 1179

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 27/81 (33%), Gaps = 18/81 (22%)

Query: 61  ERCIACKLCEAICPAQAI-----TIESGPRCHDGTRRTV-----------RYDIDMIKCI 104
           + CI C  C  ICP   I     T E      +G                R  +  + C 
Sbjct: 687 DNCIQCNQCSFICPHSCIRPVLVTEEELANAPEGFEAKKALGKGLEGLKYRMQLSPLDCT 746

Query: 105 YCGLCQEACP--VDAIVEGPN 123
            CG C + CP    A+V  P 
Sbjct: 747 GCGNCADICPAKEKALVMKPI 767


>gi|219851375|ref|YP_002465807.1| aminoglycoside phosphotransferase-like protein [Methanosphaerula
           palustris E1-9c]
 gi|219545634|gb|ACL16084.1| aminoglycoside phosphotransferase-like protein [Methanosphaerula
           palustris E1-9c]
          Length = 437

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/112 (25%), Positives = 39/112 (34%), Gaps = 22/112 (19%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           F   +S  FL        +   + ++       PF    + P     + LRR       C
Sbjct: 340 FSLTLSTGFL--VFAGLLIISAFIYRPVCRGLCPFGLIFSIPSHFSRYRLRR----TGSC 393

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           I CK CE +CPAQ    ++  R                 C  CG C + CPV
Sbjct: 394 ITCKKCEKVCPAQVAGRDASRRE----------------CYLCGRCSDVCPV 429


>gi|194445567|ref|YP_002041785.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194404230|gb|ACF64452.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
          Length = 287

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 26/78 (33%), Gaps = 12/78 (15%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            + C  C  C   CP   I  +                I  ++C  CG C   CP  A+ 
Sbjct: 190 PQECRMCGACWRSCPENVIQFDDN-----------TLTIVAVRCTGCGGCAAVCPHQALR 238

Query: 120 EGPNFEFATETRQELYYD 137
              + E A+ TR    + 
Sbjct: 239 LRFDVEPAS-TRHSAVHT 255



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 11/50 (22%)

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  +CPAQA ++  G              ID  +CI CG C   CPVDAI
Sbjct: 29  CADVCPAQAFSLAQGQVS-----------IDTTRCIACGDCLFVCPVDAI 67


>gi|158634528|gb|ABW76116.1| Fe-hydrogenase 1 [Trimastix pyriformis]
          Length = 439

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 6/66 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV------RYDIDMIKCIYCGLCQEA 112
             + C+ C  C+ +CP  AI   + P         +        +ID  KCI+CG CQ  
Sbjct: 149 DPDLCVRCGACQKVCPYHAIVKLAVPCEEACPVGAIAKGPSGHAEIDWEKCIHCGQCQLH 208

Query: 113 CPVDAI 118
           CP  ++
Sbjct: 209 CPFSSV 214



 Score = 42.8 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 5/63 (7%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTV-----RYDIDMIKCIYCGLCQEACPV 115
           E C  C               + P      ++ +     +  ID   C+ CG CQ+ CP 
Sbjct: 106 ESCRNCTPAAYFVTNACQGCVARPCMSTCPKKAISRVDGQAKIDPDLCVRCGACQKVCPY 165

Query: 116 DAI 118
            AI
Sbjct: 166 HAI 168


>gi|124485064|ref|YP_001029680.1| hypothetical protein Mlab_0237 [Methanocorpusculum labreanum Z]
 gi|124362605|gb|ABN06413.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methanocorpusculum labreanum Z]
          Length = 93

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 23/71 (32%), Gaps = 6/71 (8%)

Query: 56  YPNGEERCIACKLCEAICPAQA------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
                ERC  C  C   CP  A          +         +    D+    C  CG+C
Sbjct: 5   MHINMERCTGCNNCVVACPVNALELNTVDPATTDKIYLVVDGKAKILDVKHELCAGCGVC 64

Query: 110 QEACPVDAIVE 120
            EACP + I  
Sbjct: 65  VEACPYNVIRL 75



 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD-KERLLNN 144
             I+M +C  C  C  ACPV+A+      + AT  +  L  D K ++L+ 
Sbjct: 5   MHINMERCTGCNNCVVACPVNALEL-NTVDPATTDKIYLVVDGKAKILDV 53


>gi|46578913|ref|YP_009721.1| iron-sulfur cluster-binding protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46448325|gb|AAS94980.1| iron-sulfur cluster-binding protein, putative [Desulfovibrio
           vulgaris str. Hildenborough]
          Length = 501

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 38/124 (30%), Gaps = 37/124 (29%)

Query: 58  NGEERCIACKLCEAICPAQAIT-----------------------IESGPRCHDGTRRTV 94
              + C  C LC   CP  A+                         E+        +   
Sbjct: 338 CDADACTGCGLCVRACPVDALHVVRKDGQRTASNETVDARGDVPDDEAASSTARRGKARR 397

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVR 154
           R ++D   C+ CG+C   CP  A+          E R    +  E      D +E  I++
Sbjct: 398 RLEVDTSVCLGCGVCALRCPTGALRL--------EERPARVFHPE------DSFERVILQ 443

Query: 155 NIVT 158
           ++  
Sbjct: 444 SLER 447



 Score = 37.8 bits (86), Expect = 0.46,   Method: Composition-based stats.
 Identities = 12/23 (52%), Positives = 13/23 (56%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIV 119
             D   C  CGLC  ACPVDA+ 
Sbjct: 337 TCDADACTGCGLCVRACPVDALH 359


>gi|302390736|ref|YP_003826557.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermosediminibacter oceani DSM 16646]
 gi|302201364|gb|ADL08934.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermosediminibacter oceani DSM 16646]
          Length = 383

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 31/103 (30%), Gaps = 13/103 (12%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
               F   ++       +      K         E   +     + RCI C  C  +CP 
Sbjct: 154 IGSGFGGAIKNLAMGCISCKDHHGKAERGRIHFYEG--KHLEWIKARCIRCGQCVDVCPH 211

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           +++ +                 ID   C+ CG C   CP  A+
Sbjct: 212 KSLQLVDD-----------SIVIDKTVCVKCGRCARVCPEKAL 243



 Score = 41.6 bits (96), Expect = 0.037,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 19/61 (31%), Gaps = 10/61 (16%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI+CK          I    G                  +CI CG C + CP  ++    
Sbjct: 169 CISCKDHHGKAERGRIHFYEGKHLEW----------IKARCIRCGQCVDVCPHKSLQLVD 218

Query: 123 N 123
           +
Sbjct: 219 D 219


>gi|326201720|ref|ZP_08191591.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Clostridium papyrosolvens DSM 2782]
 gi|325988320|gb|EGD49145.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Clostridium papyrosolvens DSM 2782]
          Length = 597

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 11/58 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C  CK C       AI+   G             +I+   C  CGLC   CP +AI
Sbjct: 545 DNCKNCKKCITDIGCPAISFIDGKV-----------NIEPSLCYGCGLCTNVCPFNAI 591


>gi|256839019|ref|ZP_05544529.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256739938|gb|EEU53262.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 605

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 6/56 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            + +C  C  C  +C  +AIT ++              ++D  KC  CGLC++ CP
Sbjct: 6   DKSKCCGCNACGDVCTHKAITFKTDIEGFWYP------EVDKNKCTDCGLCEKVCP 55


>gi|254503333|ref|ZP_05115484.1| 4Fe-4S binding domain protein [Labrenzia alexandrii DFL-11]
 gi|222439404|gb|EEE46083.1| 4Fe-4S binding domain protein [Labrenzia alexandrii DFL-11]
          Length = 652

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 13/96 (13%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
           T+N P                      E+ C  C  C ++CP+ A+              
Sbjct: 480 TLNAPDVLLDLPAGAPYGAV----AMNEDACTLCLSCVSLCPSGALKENPD--------- 526

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
             +       C+ CG+C   CP  A+   P    + 
Sbjct: 527 QPQLRFQEDACLQCGICTNICPESALSLVPQLNLSD 562



 Score = 39.3 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 33/99 (33%), Gaps = 17/99 (17%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
             C  C  +CP  AIT                  ID + C  CG+C  ACP  A+     
Sbjct: 280 TGCNRCLDLCPTGAITPAGD-----------HITIDPMVCAGCGMCSAACPSGAVSYDAP 328

Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPY 162
                  R       E L     +  +E  R +V D+ Y
Sbjct: 329 TPQHVFKR------IETLATTWRKAANEPPRLLVHDAAY 361


>gi|134093636|ref|YP_001098711.1| NAD dependent formate dehydrogenase subunit alpha Fdh1A
           [Herminiimonas arsenicoxydans]
 gi|133737539|emb|CAL60582.1| Formate dehydrogenase, alpha subunit [Herminiimonas arsenicoxydans]
          Length = 946

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID----MIKCIYCGLCQEACP 114
             + CI C  C   C  +    +       G    + +D+D       C+ CG C +ACP
Sbjct: 152 NLDACIQCTRCVRACRDE-QENDVIGLAFRGDHAKIVFDMDDPMGASTCVACGECVQACP 210

Query: 115 VDAIV 119
             A++
Sbjct: 211 TGALM 215


>gi|150399312|ref|YP_001323079.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus vannielii SB]
 gi|150012015|gb|ABR54467.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           vannielii SB]
          Length = 80

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 8/69 (11%)

Query: 60  EERCIACKLCEAICPAQAITIE--------SGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            E+C  C  C   CP  A   +        S  +        V   ++   C  CG C E
Sbjct: 8   PEKCHGCGNCVVACPVNAQDPDVSGGKGPSSDEKLIMRVENGVVSIVNNSLCGGCGACIE 67

Query: 112 ACPVDAIVE 120
           ACPVDAI  
Sbjct: 68  ACPVDAIKL 76



 Score = 34.3 bits (77), Expect = 6.2,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDA 117
             + ++   KC  CG C  ACPV+A
Sbjct: 1   MYKLEVYPEKCHGCGNCVVACPVNA 25


>gi|158319966|ref|YP_001512473.1| hydrogenase, Fe-only [Alkaliphilus oremlandii OhILAs]
 gi|158140165|gb|ABW18477.1| hydrogenase, Fe-only [Alkaliphilus oremlandii OhILAs]
          Length = 578

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 7/85 (8%)

Query: 59  GEERCIACKLCEAIC-PAQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115
             E+CI C  C + C   Q +           T     Y   +    C  CG C  ACPV
Sbjct: 140 DPEKCILCGRCISTCSKVQEVHAIGFIERGFDTTVAPAYAKSLDDVFCTNCGQCITACPV 199

Query: 116 DAIVEGPNFEFATETRQELYYDKER 140
            A+ E  N     +   +  YDKE+
Sbjct: 200 GALYEKENI----KDVWKAIYDKEK 220


>gi|52549060|gb|AAU82909.1| MinD superfamily P-loop ATPase [uncultured archaeon GZfos23H9]
          Length = 291

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 10/62 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +  C  C  CE  C   AI                 Y ++  +C  CG C   CP +A+
Sbjct: 66  DKTLCSECGTCEETCRFNAIVSTEE----------SGYAVNPARCEGCGACVFTCPQEAV 115

Query: 119 VE 120
             
Sbjct: 116 TL 117


>gi|84488976|ref|YP_447208.1| ferredoxin [Methanosphaera stadtmanae DSM 3091]
 gi|84372295|gb|ABC56565.1| ferredoxin [Methanosphaera stadtmanae DSM 3091]
          Length = 59

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 12/61 (19%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            + C+AC LC   CP  AI   +             Y ID  KC+ CG+C EACP  AI 
Sbjct: 9   NDNCVACGLCVNACPIDAIAEGN------------PYVIDEEKCVGCGVCAEACPTQAIE 56

Query: 120 E 120
           E
Sbjct: 57  E 57


>gi|33151622|ref|NP_872975.1| electron transport complex protein RnfB [Haemophilus ducreyi
           35000HP]
 gi|71153696|sp|Q7VNT5|RNFB_HAEDU RecName: Full=Electron transport complex protein rnfB
 gi|33147843|gb|AAP95364.1| putative ferredoxin II, iron sulfur protein [Haemophilus ducreyi
           35000HP]
          Length = 207

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 21/62 (33%), Gaps = 10/62 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ CI C  C   CP  AI   +             + +    C  C LC   CP + I
Sbjct: 112 HEDMCIGCTKCIQACPVDAIIGTNK----------AMHTVVADLCTGCELCVAPCPTNCI 161

Query: 119 VE 120
             
Sbjct: 162 EM 163



 Score = 37.8 bits (86), Expect = 0.50,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 14/25 (56%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           I    CI C  C +ACPVDAI+   
Sbjct: 111 IHEDMCIGCTKCIQACPVDAIIGTN 135


>gi|89896185|ref|YP_519672.1| hypothetical protein DSY3439 [Desulfitobacterium hafniense Y51]
 gi|219668025|ref|YP_002458460.1| cobyrinic acid ac-diamide synthase [Desulfitobacterium hafniense
           DCB-2]
 gi|89335633|dbj|BAE85228.1| hypothetical protein [Desulfitobacterium hafniense Y51]
 gi|219538285|gb|ACL20024.1| Cobyrinic acid ac-diamide synthase [Desulfitobacterium hafniense
           DCB-2]
          Length = 287

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 26/73 (35%), Gaps = 12/73 (16%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
            + L +     E C  C  C   C  +AI+                Y +D   C  CG+C
Sbjct: 56  YYGLPKAQIDPELCSQCDQCRQNCRFEAIS------------AGSTYRVDPFACEGCGVC 103

Query: 110 QEACPVDAIVEGP 122
           Q  CP  AI   P
Sbjct: 104 QALCPAGAITLKP 116


>gi|289596653|ref|YP_003483349.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Aciduliprofundum boonei T469]
 gi|289534440|gb|ADD08787.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Aciduliprofundum boonei T469]
          Length = 848

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 21/64 (32%), Gaps = 9/64 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              RC  C +C   C A A  I+                +    C+ C  C  ACP  A 
Sbjct: 779 NPRRCAGCGICVDACFAGARYIDEEDHIA---------KVRTELCVGCAACANACPSGAA 829

Query: 119 VEGP 122
           V  P
Sbjct: 830 VVMP 833



 Score = 34.7 bits (78), Expect = 4.0,   Method: Composition-based stats.
 Identities = 13/40 (32%), Positives = 16/40 (40%)

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E GP       +     ++  KCI C LC E C V  I  
Sbjct: 82  EGGPGNFKARFKHRPQSVNEFKCIGCDLCHEKCDVKFIPM 121


>gi|289596652|ref|YP_003483348.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
            [Aciduliprofundum boonei T469]
 gi|289534439|gb|ADD08786.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
            [Aciduliprofundum boonei T469]
          Length = 1105

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 21/61 (34%), Gaps = 9/61 (14%)

Query: 59   GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              E C  C  C+  C   AITI+                ++   C  CG C   CP  AI
Sbjct: 1034 DTEICAGCGRCKDQCAYGAITIDPVRHVAM---------VNEALCEGCGACSANCPTTAI 1084

Query: 119  V 119
             
Sbjct: 1085 Q 1085



 Score = 37.8 bits (86), Expect = 0.47,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 3/41 (7%)

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           +     ID  KC  CG C + CP        +F+    TR+
Sbjct: 235 KRKSPFIDWDKCTGCGECAKVCPTV---LPSDFDLKMATRK 272


>gi|269792085|ref|YP_003316989.1| NADH dehydrogenase (quinone) [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269099720|gb|ACZ18707.1| NADH dehydrogenase (quinone) [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 620

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 16/100 (16%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            LR+F +      +  +    +   RG    R   +    C++C  C  +CP  AI  + 
Sbjct: 532 TLRHFMEEY--REHQDQGFCRAGVCRGMFVARVEAD---LCVSCGACAKVCPFDAIHRDP 586

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
             +     R           C  CG C + CP+ A++  P
Sbjct: 587 SGKFAVDRR-----------CEGCGACLDVCPMGALLPSP 615



 Score = 41.6 bits (96), Expect = 0.036,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 23/53 (43%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
             + G       R      ++   C+ CG C + CP DAI   P+ +FA + R
Sbjct: 543 HQDQGFCRAGVCRGMFVARVEADLCVSCGACAKVCPFDAIHRDPSGKFAVDRR 595


>gi|220919395|ref|YP_002494699.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219957249|gb|ACL67633.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 632

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 9/59 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
               C  C +C A CP  A+ I+             +  +  + C  CG C  ACP  A
Sbjct: 561 DAALCGGCGMCVAACPFGAMVIDGAD---------GKATVLAVDCRGCGTCAAACPTGA 610



 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 19/80 (23%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI-------------YCGLCQEA 112
           C  C  +C A      + P   +  R+ +   +    C+              C  C  A
Sbjct: 245 CLGCAEVCGAACPVEVADPSGGEPARKAIH--LPYAGCLPHAAVVDRAACPPGCAACAGA 302

Query: 113 CPVDAIVEGPNFEFATETRQ 132
           CP  A+        A  +R+
Sbjct: 303 CPFGAVRLDD----APRSRE 318



 Score = 34.3 bits (77), Expect = 5.9,   Method: Composition-based stats.
 Identities = 9/22 (40%), Positives = 13/22 (59%)

Query: 97  DIDMIKCIYCGLCQEACPVDAI 118
           ++D   C  CG+C  ACP  A+
Sbjct: 559 EVDAALCGGCGMCVAACPFGAM 580


>gi|163736157|ref|ZP_02143576.1| dihydroorotate dehydrogenase family protein [Phaeobacter
           gallaeciensis BS107]
 gi|161390027|gb|EDQ14377.1| dihydroorotate dehydrogenase family protein [Phaeobacter
           gallaeciensis BS107]
          Length = 434

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 8/76 (10%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI C  C A C       E              + +   +C+ 
Sbjct: 330 QYLDLNYIAKAKINQDDCIKCGRCFAAC-------EDTSHQAIAMSEDRVFTVKDDECVA 382

Query: 106 CGLCQEACPVD-AIVE 120
           C LC   CPV+  I  
Sbjct: 383 CNLCVNVCPVEGCITM 398


>gi|288941583|ref|YP_003443823.1| NADH:ubiquinone oxidoreductase subunit G [Allochromatium vinosum
           DSM 180]
 gi|62632271|gb|AAX89150.1| HoxU [Allochromatium vinosum]
 gi|288896955|gb|ADC62791.1| NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding
           protein [Allochromatium vinosum DSM 180]
          Length = 243

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 29/90 (32%), Gaps = 8/90 (8%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGT 90
            +  P+ +           +   +     RCI C  C  +C     A T +   R  D  
Sbjct: 131 HVRLPYRQAPYPVDS----SHEMFRLDHNRCILCTRCVRVCDEIEGAHTWDVMGRGSDCR 186

Query: 91  RR--TVRYDIDMIKCIYCGLCQEACPVDAI 118
                 R   +   C  CG C + CP  A+
Sbjct: 187 VITDMARPWGESETCTSCGKCVQVCPTGAL 216


>gi|21226157|ref|NP_632079.1| tungsten formylmethanofuran dehydrogenase subunit F [Methanosarcina
           mazei Go1]
 gi|20904384|gb|AAM29751.1| tungsten formylmethanofuran dehydrogenase subunit F [Methanosarcina
           mazei Go1]
          Length = 500

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 6/77 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIES--GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
             E+C  C++C  +CP  AI+ E+           +   +     KC+ C LC+ ACP D
Sbjct: 140 DLEKCTFCRMCSNLCPVHAISFEAVGEVPDEKQYPKYDTFVNINEKCLPCLLCEGACPQD 199

Query: 117 AIVEGPNFEFATETRQE 133
           AI      EF    ++E
Sbjct: 200 AI----EVEFTFPKKEE 212



 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 5/86 (5%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L+      +RC  C +C  ICP +A+ +        G        +D+ KC +C +C   
Sbjct: 95  LKILDYDYKRCNGCGICAEICPTKALEMGPLHEIATGLDAPAVM-MDLEKCTFCRMCSNL 153

Query: 113 CPVDAIVEGPNFEFATETRQELYYDK 138
           CPV AI     FE   E   E  Y K
Sbjct: 154 CPVHAIS----FEAVGEVPDEKQYPK 175



 Score = 40.9 bits (94), Expect = 0.065,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 7/87 (8%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T     E         GE  +       E+C  C +C   C   A+ +       D   
Sbjct: 205 FTFPKKEEIAPFKEGVEGEIEI-----DLEKCNFCGICAKFC--DAVILLEREPTPDNPV 257

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAI 118
              +  +D  +C YC LCQ+ CP +AI
Sbjct: 258 PFEQILVDTDRCDYCVLCQDICPEEAI 284



 Score = 40.5 bits (93), Expect = 0.088,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 4/87 (4%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E+  T         +    +   RC  C LC+ ICP +AI    G R  +      +  +
Sbjct: 248 EREPTPDNPVPFEQILVDTD---RCDYCVLCQDICPEEAIK-VKGERPCEAPEVGGKVKV 303

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFE 125
           D +KC  C  CQ  CP +A+      E
Sbjct: 304 DDLKCTQCARCQAVCPYEAVDLQKPME 330



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 6/83 (7%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P+E         G+ +L      E     C+ C  +CP+    + + P           
Sbjct: 318 CPYEAVDLQKPMEGKLSLIEVNLKECDPQGCRGCFNVCPSDLWYVPTDPEDPRKIAFAEE 377

Query: 96  YDIDMIKCIYCGLCQEACPVDAI 118
           Y      C+YCG C +AC +DAI
Sbjct: 378 Y------CMYCGACVKACHLDAI 394



 Score = 38.5 bits (88), Expect = 0.30,   Method: Composition-based stats.
 Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 5/81 (6%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE-----SGPRCHDGTRR 92
           FE     P  +       + N  E+C+ C LCE  CP  AI +E                
Sbjct: 161 FEAVGEVPDEKQYPKYDTFVNINEKCLPCLLCEGACPQDAIEVEFTFPKKEEIAPFKEGV 220

Query: 93  TVRYDIDMIKCIYCGLCQEAC 113
               +ID+ KC +CG+C + C
Sbjct: 221 EGEIEIDLEKCNFCGICAKFC 241


>gi|50288565|ref|XP_446712.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49526020|emb|CAG59639.1| unnamed protein product [Candida glabrata]
          Length = 607

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP---N 123
           K C   C      +++G  C + T  +    I  + CI CG+C + CP DAI       N
Sbjct: 19  KKCRQECKRSCPVVKTGKLCIEVTPTSKIAFISEVLCIGCGICVKKCPFDAITIINLPTN 78

Query: 124 FEFATETR 131
            E     R
Sbjct: 79  LESHVTHR 86


>gi|15669492|ref|NP_248302.1| ferredoxin [Methanocaldococcus jannaschii DSM 2661]
 gi|48474331|sp|Q58698|Y1302_METJA RecName: Full=Uncharacterized polyferredoxin-like protein MJ1302
 gi|1591941|gb|AAB99311.1| photosystem I iron-sulfur center 1 isolog [Methanocaldococcus
           jannaschii DSM 2661]
          Length = 168

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 63  CIACKLCEAICPAQAITIESGP--RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           CI C+ C  +CP +AI +      +  D   +     I+  KC+YC  C + CPV ++ 
Sbjct: 58  CIGCEGCANVCPTKAIEMIPIEPVKITDNYVKDKIPKINPEKCVYCLYCHDFCPVFSVF 116



 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 10/27 (37%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPN 123
            +    CI C  C   CP  AI   P 
Sbjct: 52  TVIEELCIGCEGCANVCPTKAIEMIPI 78


>gi|116750219|ref|YP_846906.1| pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta
           [Syntrophobacter fumaroxidans MPOB]
 gi|116699283|gb|ABK18471.1| pyruvate ferredoxin oxidoreductase, delta subunit [Syntrophobacter
           fumaroxidans MPOB]
          Length = 97

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 10/65 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++C  C  C   CP    + ++             Y  +   C  CG+C + CPVDAI
Sbjct: 41  DRKKCTKCGQCYIFCPDMVYSKDAEG----------YYVQNYYYCKGCGICAKECPVDAI 90

Query: 119 VEGPN 123
                
Sbjct: 91  TMHQE 95


>gi|329123232|ref|ZP_08251800.1| electron transport complex protein RnfC [Haemophilus aegyptius ATCC
           11116]
 gi|327471441|gb|EGF16889.1| electron transport complex protein RnfC [Haemophilus aegyptius ATCC
           11116]
          Length = 707

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 12/101 (11%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C   CP   +  +               +  +  CI CG+C   CP   I  
Sbjct: 376 QACIRCSSCSDACPVN-LMPQQLYWFARSEDHKKSEEYALKDCIECGICAYVCPSH-IPL 433

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161
              F      RQE    K ++    ++ +      I  ++ 
Sbjct: 434 IQYF------RQE----KAKIWQIKEKQKKSDEAKIRFEAK 464


>gi|319776069|ref|YP_004138557.1| NADH:ubiquinone oxidoreductase subunit RnfC [Haemophilus influenzae
           F3047]
 gi|317450660|emb|CBY86880.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Haemophilus
           influenzae F3047]
          Length = 651

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 12/101 (11%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C   CP   +  +               +  +  CI CG+C   CP   I  
Sbjct: 376 QACIRCSSCSDACPVN-LMPQQLYWFARSEDHKKSEEYALKDCIECGICAYVCPSH-IPL 433

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161
              F      RQE    K ++    ++ +      I  ++ 
Sbjct: 434 IQYF------RQE----KAKIWQIKEKQKKSDEAKIRFEAK 464


>gi|319896878|ref|YP_004135073.1| NADH:ubiquinone oxidoreductase, subunit rnfc [Haemophilus
           influenzae F3031]
 gi|317432382|emb|CBY80737.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Haemophilus
           influenzae F3031]
          Length = 650

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 12/101 (11%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C   CP   +  +               +  +  CI CG+C   CP   I  
Sbjct: 376 QACIRCSSCSDACPVN-LMPQQLYWFARSEDHKKSEEYALKDCIECGICAYVCPSH-IPL 433

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161
              F      RQE    K ++    ++ +      I  ++ 
Sbjct: 434 IQYF------RQE----KAKIWQIKEKQKKSDEAKIRFEAK 464


>gi|310658269|ref|YP_003935990.1| hypothetical protein CLOST_0962 [Clostridium sticklandii DSM 519]
 gi|308825047|emb|CBH21085.1| conserved protein of unknown function [Clostridium sticklandii]
          Length = 378

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 11/61 (18%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
             +CI+C  C+  CPA  I++                 +++  CI C  C E CP DA+ 
Sbjct: 319 HSKCISCGHCKRNCPANVISMVDNKPV-----------VNLKDCISCFCCHEVCPADAVN 367

Query: 120 E 120
            
Sbjct: 368 I 368



 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +   + +    KCI CG C+  CP + I    N
Sbjct: 310 KLKAKPEFVHSKCISCGHCKRNCPANVISMVDN 342


>gi|307260625|ref|ZP_07542317.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306869702|gb|EFN01487.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 770

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 34/107 (31%), Gaps = 3/107 (2%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E  CI C  C   CP   +  +               +  +  CI CG+C   CP  
Sbjct: 379 PEPERSCIRCSSCSDACPVG-LLPQQLYWYARSEDHDKSKEYHLDACIECGVCAYVCP-S 436

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            I     F        E+    ++      R+E+   R +  +   R
Sbjct: 437 YIPLIQYFRQEKAKITEIEEKAKKAEEAKARFEAREAR-LQKEKDAR 482


>gi|303239632|ref|ZP_07326157.1| hydrogenase large subunit domain protein [Acetivibrio
           cellulolyticus CD2]
 gi|302592803|gb|EFL62526.1| hydrogenase large subunit domain protein [Acetivibrio
           cellulolyticus CD2]
          Length = 446

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 12/69 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            EE+C  C  C   CP +AI +  G              I   +CI CG C   CP  A 
Sbjct: 11  DEEKCKGCTNCIKRCPTEAIRVRKGKA-----------RIIAERCIDCGECIRVCPYHAK 59

Query: 119 V-EGPNFEF 126
                 F+ 
Sbjct: 60  KAITDQFDI 68


>gi|301170440|emb|CBW30047.1| fused predicted 4Fe-4S ferredoxin-type protein/conserved protein
           [Haemophilus influenzae 10810]
          Length = 706

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 12/101 (11%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C   CP   +  +               +  +  CI CG+C   CP   I  
Sbjct: 376 QACIRCSSCSDACPVN-LMPQQLYWFARSEDHKKSEEYALKDCIECGICAYVCPSH-IPL 433

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161
              F      RQE    K ++    ++ +      I  ++ 
Sbjct: 434 IQYF------RQE----KAKIWQIKEKQKKSDEAKIRFEAK 464


>gi|291458640|ref|ZP_06598030.1| conserved domain protein [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291419173|gb|EFE92892.1| conserved domain protein [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 56

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 11/64 (17%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + C++C  C + CP QAI+                Y +D   CI CG C+E CP
Sbjct: 1   MAHVISDECVSCGACASACPVQAISEGESK-----------YVVDADSCIDCGACEEVCP 49

Query: 115 VDAI 118
             AI
Sbjct: 50  TGAI 53


>gi|288560087|ref|YP_003423573.1| ferredoxin [Methanobrevibacter ruminantium M1]
 gi|288542797|gb|ADC46681.1| ferredoxin [Methanobrevibacter ruminantium M1]
          Length = 324

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 5/60 (8%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ CI C++C  ICPA AI++ +        +     ++D  KC+YCG+C+ ACP +AI
Sbjct: 140 NEDDCIYCQVCAEICPAGAISLTASD-----GKILDTIEVDEDKCVYCGVCKRACPQEAI 194



 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 3/78 (3%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRC---HDGTRRTVRYDIDMIKCIYCG 107
             L      E++C+ C +C+  CP +AI                           CI CG
Sbjct: 167 KILDTIEVDEDKCVYCGVCKRACPQEAIKTVCSTCMYSDEIEKIAITGDIFITEDCINCG 226

Query: 108 LCQEACPVDAIVEGPNFE 125
            C+E CPVDA      F+
Sbjct: 227 WCKEICPVDAAEVTKPFD 244



 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 4/80 (5%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC----HDGTRRTVRYDIDMIKC 103
           RG+         ++ C+ C LC   CP  A+  + G +      +  + T    I    C
Sbjct: 46  RGQAEGNNIVLDQDTCVLCGLCSFACPFGALEFDIGGQDASELPNYPKWTHESSISQDDC 105

Query: 104 IYCGLCQEACPVDAIVEGPN 123
            +CG C  ACP DAI+    
Sbjct: 106 EFCGRCYTACPQDAILFKRE 125



 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 22/62 (35%), Gaps = 1/62 (1%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           ++ C  C  C   CP  AI                   I+   CIYC +C E CP  AI 
Sbjct: 102 QDDCEFCGRCYTACPQDAILF-KRELPDRNALLKGEISINEDDCIYCQVCAEICPAGAIS 160

Query: 120 EG 121
             
Sbjct: 161 LT 162



 Score = 41.2 bits (95), Expect = 0.044,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 4/87 (4%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R     R+     + C+AC +C   CP  ++ I        G        +D   C+ CG
Sbjct: 6   RDGAESRKLSYDNKVCLACGICADTCPTDSLAIADVLAIARGQAEGNNIVLDQDTCVLCG 65

Query: 108 LCQEACPVDAIVEGPNFEFATETRQEL 134
           LC  ACP  A+     F+   +   EL
Sbjct: 66  LCSFACPFGAL----EFDIGGQDASEL 88



 Score = 38.5 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 26/75 (34%), Gaps = 8/75 (10%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
            + A+       E CI C  C+ ICP  A  +                 +    C+ CG 
Sbjct: 208 EKIAITGDIFITEDCINCGWCKEICPVDAAEVTKPFDGEIS--------VTEEDCVACGS 259

Query: 109 CQEACPVDAIVEGPN 123
           C + C  +A+    N
Sbjct: 260 CIDICSCNAVSLQDN 274



 Score = 34.3 bits (77), Expect = 5.6,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 27/87 (31%), Gaps = 11/87 (12%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
               +  E          +         EE C+AC  C  IC   A++++          
Sbjct: 223 INCGWCKEICPVDAAEVTKPFDGEISVTEEDCVACGSCIDICSCNAVSLQDNVAV----- 277

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAI 118
                  +   C+ CG C   CP + I
Sbjct: 278 ------FNQDYCVLCGACARLCPQERI 298


>gi|260581278|ref|ZP_05849096.1| electron transport complex protein rnfC [Haemophilus influenzae
           RdAW]
 gi|260092105|gb|EEW76050.1| electron transport complex protein rnfC [Haemophilus influenzae
           RdAW]
          Length = 807

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 12/101 (11%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C   CP   +  +               +  +  CI CG+C   CP   I  
Sbjct: 376 QACIRCSSCSDACPVN-LMPQQLYWFARSEDHKKSEEYALKDCIECGICAYVCPSH-IPL 433

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161
              F      RQE    K ++    ++ +      I  ++ 
Sbjct: 434 IQYF------RQE----KAKIWQIKEKQKKSDEAKIRFEAK 464


>gi|218260395|ref|ZP_03475734.1| hypothetical protein PRABACTJOHN_01397 [Parabacteroides johnsonii
           DSM 18315]
 gi|218224549|gb|EEC97199.1| hypothetical protein PRABACTJOHN_01397 [Parabacteroides johnsonii
           DSM 18315]
          Length = 184

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/81 (34%), Positives = 35/81 (43%), Gaps = 13/81 (16%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           EK   S + R    L +Y    E+C  C LC  +CP  AIT +          + V + I
Sbjct: 115 EKRCPSHQCR---ELTQYFINPEKCKGCTLCARMCPVNAITGD----------KKVPHVI 161

Query: 99  DMIKCIYCGLCQEACPVDAIV 119
           D   CI CG C E C   AI 
Sbjct: 162 DPQTCIRCGSCIERCKFGAIY 182


>gi|222111967|ref|YP_002554231.1| formate dehydrogenase subunit alpha [Acidovorax ebreus TPSY]
 gi|221731411|gb|ACM34231.1| formate dehydrogenase, alpha subunit [Acidovorax ebreus TPSY]
          Length = 961

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACPVDAI 118
           CI C  C   C  +    +       G    + +D    +    C+ CG C +ACP  A+
Sbjct: 181 CIQCNRCVRACREE-QVNDVIGYALRGADSKIVFDLDDPMGASTCVACGECVQACPTGAL 239


>gi|190149438|ref|YP_001967963.1| electron transport complex protein RnfC [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|307262757|ref|ZP_07544384.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|189914569|gb|ACE60821.1| electron transport complex protein RnfC [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|306871902|gb|EFN03619.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 770

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 34/107 (31%), Gaps = 3/107 (2%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E  CI C  C   CP   +  +               +  +  CI CG+C   CP  
Sbjct: 379 PEPERSCIRCSSCSDACPVG-LLPQQLYWYARSEDHDKSKEYHLDACIECGVCAYVCP-S 436

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            I     F        E+    ++      R+E+   R +  +   R
Sbjct: 437 YIPLIQYFRQEKAKITEIEEKAKKAEEAKARFEAREAR-LQKEKDAR 482


>gi|188586370|ref|YP_001917915.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179351057|gb|ACB85327.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 170

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 26/85 (30%), Gaps = 10/85 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E+       R +  +      +E  I C  C   C   AI                  ++
Sbjct: 17  EQVKPPEHRREQGPVVMVECFQE--IPCDPCNKACNFGAIKPFEDIND--------LPEV 66

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPN 123
           D  KC  CG+C   CP  AI     
Sbjct: 67  DFDKCNGCGVCVGYCPGLAIFIIDE 91


>gi|220916658|ref|YP_002491962.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954512|gb|ACL64896.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 646

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 24/87 (27%), Gaps = 14/87 (16%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK----- 102
           R      +     E+C+ C  C  +CP   + +                           
Sbjct: 547 RCLVCHVQTIYDPEKCVLCGRCVDVCPEYCLALVPLEDVDLPEEERRALAAAAEAGGLPL 606

Query: 103 ---------CIYCGLCQEACPVDAIVE 120
                    CI CGLC   CP DA+  
Sbjct: 607 SAMIKDDAPCIRCGLCAIRCPTDAMTM 633



 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 14/47 (29%), Gaps = 1/47 (2%)

Query: 77  AITIESGPRCHDGTRRTVRYDID-MIKCIYCGLCQEACPVDAIVEGP 122
           A   +                I    KC+ CG C + CP   +   P
Sbjct: 535 AFAADEAIAQGARCLVCHVQTIYDPEKCVLCGRCVDVCPEYCLALVP 581


>gi|148827108|ref|YP_001291861.1| electron transport complex protein RnfC [Haemophilus influenzae
           PittGG]
 gi|148718350|gb|ABQ99477.1| electron transport complex protein RnfC [Haemophilus influenzae
           PittGG]
          Length = 683

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 12/101 (11%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C   CP   +  +               +  +  CI CG+C   CP   I  
Sbjct: 352 QACIRCSSCSDACPVN-LMPQQLYWFARSEDHKKSEEYALKDCIECGICAYVCPSH-IPL 409

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161
              F      RQE    K ++    ++ +      I  ++ 
Sbjct: 410 IQYF------RQE----KAKIWQIKEKQKKSDEAKIRFEAK 440


>gi|145641063|ref|ZP_01796644.1| electron transport complex protein RnfC [Haemophilus influenzae
           R3021]
 gi|145274224|gb|EDK14089.1| electron transport complex protein RnfC [Haemophilus influenzae
           22.4-21]
          Length = 763

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 12/101 (11%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C   CP   +  +               +  +  CI CG+C   CP   I  
Sbjct: 376 QACIRCSSCSDACPVN-LMPQQLYWFARSEDHKKSEEYALKDCIECGICAYVCPSH-IPL 433

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161
              F      RQE    K ++    ++ +      I  ++ 
Sbjct: 434 IQYF------RQE----KAKIWQIKEKQKKSDEAKIRFEAK 464


>gi|145639159|ref|ZP_01794766.1| electron transport complex protein RnfC [Haemophilus influenzae
           PittII]
 gi|145271721|gb|EDK11631.1| electron transport complex protein RnfC [Haemophilus influenzae
           PittII]
          Length = 651

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 12/101 (11%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C   CP   +  +               +  +  CI CG+C   CP   I  
Sbjct: 376 QACIRCSSCSDACPVN-LMPQQLYWFARSEDHKKSEEYALKDCIECGICAYVCPSH-IPL 433

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161
              F      RQE    K ++    ++ +      I  ++ 
Sbjct: 434 IQYF------RQE----KAKIWQIKEKQKKSDEAKIRFEAK 464


>gi|145635459|ref|ZP_01791160.1| electron transport complex protein RnfC [Haemophilus influenzae
           PittAA]
 gi|145267333|gb|EDK07336.1| electron transport complex protein RnfC [Haemophilus influenzae
           PittAA]
          Length = 868

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 12/101 (11%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C   CP   +  +               +  +  CI CG+C   CP   I  
Sbjct: 376 QACIRCSSCSDACPVN-LMPQQLYWFARSEDHKKSEEYALKDCIECGICAYVCPSH-IPL 433

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161
              F      RQE    K ++    ++ +      I  ++ 
Sbjct: 434 IQYF------RQE----KAKIWQIKEKQKKSDEAKIRFEAK 464


>gi|145633619|ref|ZP_01789346.1| electron transport complex protein RnfC [Haemophilus influenzae
           3655]
 gi|144985496|gb|EDJ92312.1| electron transport complex protein RnfC [Haemophilus influenzae
           3655]
          Length = 707

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 12/101 (11%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C   CP   +  +               +  +  CI CG+C   CP   I  
Sbjct: 376 QACIRCSSCSDACPVN-LMPQQLYWFARSEDHKKSEEYALKDCIECGICAYVCPSH-IPL 433

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161
              F      RQE    K ++    ++ +      I  ++ 
Sbjct: 434 IQYF------RQE----KAKIWQIKEKQKKSDEAKIRFEAK 464


>gi|126699484|ref|YP_001088381.1| putative iron-sulfur-binding membrane protein [Clostridium
           difficile 630]
          Length = 298

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 15/69 (21%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           + RY   +++CI C  C+ +C      +E               + + ++CI CG C+ A
Sbjct: 242 IFRYRLDKDKCINCGKCKKVCQMNIDPVE---------------NCNHLECIRCGRCKNA 286

Query: 113 CPVDAIVEG 121
           CPVDAI  G
Sbjct: 287 CPVDAISYG 295


>gi|147921465|ref|YP_684720.1| putative heterodisulfide reductase, subunit A [uncultured
           methanogenic archaeon RC-I]
 gi|110620116|emb|CAJ35394.1| putative heterodisulfide reductase, subunit A [uncultured
           methanogenic archaeon RC-I]
          Length = 786

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 22/84 (26%), Gaps = 7/84 (8%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE-------SGPRCHDGTRRTVRY 96
              FR            ++C++C  C A C  +                          Y
Sbjct: 227 PGDFRVTIETGPVFIDPDKCVSCGKCSAACSVRVPDEWNAGLSSRKAVYKPFAQAVPGTY 286

Query: 97  DIDMIKCIYCGLCQEACPVDAIVE 120
            ID   C  CG C   C   AI  
Sbjct: 287 SIDPDACKRCGKCARECDARAINL 310



 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 22/62 (35%), Gaps = 12/62 (19%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ERC  C +C  +CP  A  +                 ID + CI  G C   CP  AI
Sbjct: 581 DPERCTRCGICLKLCPYGAPYLNGKVA------------IDPLSCIGLGGCISRCPEHAI 628

Query: 119 VE 120
             
Sbjct: 629 TM 630


>gi|110597056|ref|ZP_01385345.1| Pyruvate:ferredoxin (flavodoxin) oxidoreductase [Chlorobium
           ferrooxidans DSM 13031]
 gi|110341247|gb|EAT59712.1| Pyruvate:ferredoxin (flavodoxin) oxidoreductase [Chlorobium
           ferrooxidans DSM 13031]
          Length = 1187

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 20/73 (27%), Gaps = 16/73 (21%)

Query: 58  NGEERCIACKLCEAICPAQA--------ITIESGPRC--------HDGTRRTVRYDIDMI 101
                CI C  C  +CP  A          IE+ PR                    I   
Sbjct: 689 WEPHLCIQCGKCAMVCPHAAVRAKVYDPKYIENAPRTFKSIQAKGASWEGMNYTIQIAPE 748

Query: 102 KCIYCGLCQEACP 114
            C  C +C   CP
Sbjct: 749 DCTGCIVCAHVCP 761



 Score = 34.3 bits (77), Expect = 5.8,   Method: Composition-based stats.
 Identities = 8/19 (42%), Positives = 9/19 (47%)

Query: 100 MIKCIYCGLCQEACPVDAI 118
              CI CG C   CP  A+
Sbjct: 691 PHLCIQCGKCAMVCPHAAV 709


>gi|121595764|ref|YP_987660.1| formate dehydrogenase subunit alpha [Acidovorax sp. JS42]
 gi|120607844|gb|ABM43584.1| NAD-dependent formate dehydrogenase catalytic subunit /
           NAD-dependent formate dehydrogenase iron-sulfur protein
           [Acidovorax sp. JS42]
          Length = 963

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 5/60 (8%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACPVDAI 118
           CI C  C   C  +    +       G    + +D    +    C+ CG C +ACP  A+
Sbjct: 183 CIQCNRCVRACREE-QVNDVIGYALRGADSKIVFDLDDPMGASTCVACGECVQACPTGAL 241


>gi|68250289|ref|YP_249401.1| electron transport complex protein RnfC [Haemophilus influenzae
           86-028NP]
 gi|81335290|sp|Q4QJQ6|RNFC_HAEI8 RecName: Full=Electron transport complex protein rnfC
 gi|68058488|gb|AAX88741.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Haemophilus
           influenzae 86-028NP]
          Length = 665

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 12/101 (11%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C   CP   +  +               +  +  CI CG+C   CP   I  
Sbjct: 376 QACIRCSSCSDACPVN-LMPQQLYWFARSEDHKKSEEYALKDCIECGICAYVCPSH-IPL 433

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161
              F      RQE    K ++    ++ +      I  ++ 
Sbjct: 434 IQYF------RQE----KAKIWQIKEKQKKSDEAKIRFEAK 464


>gi|54309174|ref|YP_130194.1| putative glutamate synthase (NADPH) small subunit [Photobacterium
           profundum SS9]
 gi|46913606|emb|CAG20392.1| hypothetical NADPH-dependent glutamate synthase [Photobacterium
           profundum SS9]
          Length = 536

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 20/59 (33%), Gaps = 9/59 (15%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            C  C  C   CP  AIT     +          Y +D  KC  C  C   CP  AI  
Sbjct: 481 NCFECNGCLGACPQGAITHLGKGKG---------YKVDYDKCTGCEACYSQCPCHAIEM 530


>gi|39933811|ref|NP_946087.1| formate dehydrogenase subunit alpha [Rhodopseudomonas palustris
           CGA009]
 gi|39647658|emb|CAE26178.1| NAD-dependent formate dehydrogenase alpha subunit [Rhodopseudomonas
           palustris CGA009]
          Length = 948

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 29/97 (29%), Gaps = 6/97 (6%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVR 95
           EK                 +   +CI C  C   C     T     +G          ++
Sbjct: 146 EKHPNPGLDESNPYFTYDAS---KCIVCSRCVRACEEVQGTFALTIAGRGFDSVVSPGMQ 202

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
                 +C+ CG C +ACP   + E    E  T  R 
Sbjct: 203 ESFLGSECVSCGACVQACPTATLNEKSVIEIGTPERS 239


>gi|16273572|ref|NP_439827.1| electron transport complex protein RnfC [Haemophilus influenzae Rd
           KW20]
 gi|17368309|sp|P71397|RNFC_HAEIN RecName: Full=Electron transport complex protein rnfC
 gi|1574537|gb|AAC23331.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
          Length = 819

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 12/101 (11%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C   CP   +  +               +  +  CI CG+C   CP   I  
Sbjct: 376 QACIRCSSCSDACPVN-LMPQQLYWFARSEDHKKSEEYALKDCIECGICAYVCPSH-IPL 433

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161
              F      RQE    K ++    ++ +      I  ++ 
Sbjct: 434 IQYF------RQE----KAKIWQIKEKQKKSDEAKIRFEAK 464


>gi|145629223|ref|ZP_01785022.1| electron transport complex protein RnfC [Haemophilus influenzae
           22.1-21]
 gi|144978726|gb|EDJ88449.1| electron transport complex protein RnfC [Haemophilus influenzae
           22.1-21]
 gi|309750739|gb|ADO80723.1| Electron transport complex protein RnfC [Haemophilus influenzae
           R2866]
          Length = 763

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 12/101 (11%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C   CP   +  +               +  +  CI CG+C   CP   I  
Sbjct: 376 QACIRCSSCSDACPVN-LMPQQLYWFARSEDHKKSEEYALKDCIECGICAYVCPSH-IPL 433

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161
              F      RQE    K ++    ++ +      I  ++ 
Sbjct: 434 IQYF------RQE----KAKIWQIKEKQKKSDEAKIRFEAK 464


>gi|148825771|ref|YP_001290524.1| electron transport complex protein RnfC [Haemophilus influenzae
           PittEE]
 gi|229845220|ref|ZP_04465353.1| electron transport complex protein RnfC [Haemophilus influenzae
           6P18H1]
 gi|229847306|ref|ZP_04467408.1| electron transport complex protein RnfC [Haemophilus influenzae
           7P49H1]
 gi|166225092|sp|A5UBJ0|RNFC_HAEIE RecName: Full=Electron transport complex protein rnfC
 gi|148715931|gb|ABQ98141.1| electron transport complex protein RnfC [Haemophilus influenzae
           PittEE]
 gi|229809731|gb|EEP45455.1| electron transport complex protein RnfC [Haemophilus influenzae
           7P49H1]
 gi|229811815|gb|EEP47511.1| electron transport complex protein RnfC [Haemophilus influenzae
           6P18H1]
 gi|309972919|gb|ADO96120.1| Electron transport complex protein RnfC [Haemophilus influenzae
           R2846]
          Length = 651

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 12/101 (11%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C   CP   +  +               +  +  CI CG+C   CP   I  
Sbjct: 376 QACIRCSSCSDACPVN-LMPQQLYWFARSEDHKKSEEYALKDCIECGICAYVCPSH-IPL 433

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161
              F      RQE    K ++    ++ +      I  ++ 
Sbjct: 434 IQYF------RQE----KAKIWQIKEKQKKSDEAKIRFEAK 464


>gi|331268947|ref|YP_004395439.1| polyferredoxin [Clostridium botulinum BKT015925]
 gi|329125497|gb|AEB75442.1| polyferredoxin [Clostridium botulinum BKT015925]
          Length = 288

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 5/78 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQEAC 113
            ++ C+AC  C + CP   I +    +      +   R     +     CI CGLC +AC
Sbjct: 167 NKDNCVACGACVSTCPKGVIELVPQKQLVIVSCNSHDRGLDVKNTCSTGCIGCGLCVKAC 226

Query: 114 PVDAIVEGPNFEFATETR 131
           P +AI    N      ++
Sbjct: 227 PKEAIKLENNLPVIDYSK 244



 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 11/67 (16%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L         CI C LC   CP +AI +E+               ID  KC+ CGLC   
Sbjct: 206 LDVKNTCSTGCIGCGLCVKACPKEAIKLENNLPV-----------IDYSKCVNCGLCAMK 254

Query: 113 CPVDAIV 119
           CP  AI 
Sbjct: 255 CPTKAIQ 261


>gi|320169962|gb|EFW46861.1| ATP-binding cassette sub-family E member 1 [Capsaspora owczarzaki
           ATCC 30864]
          Length = 602

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 20/56 (35%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           K C   C      +  G  C +         I    CI CG+C + CP +AI    
Sbjct: 21  KKCRQECKKSCPVVRMGKLCIEVAPTDKISYISEELCIGCGICVKKCPFEAISIIN 76


>gi|315607997|ref|ZP_07882990.1| pyruvate:ferredoxin oxidoreductase [Prevotella buccae ATCC 33574]
 gi|315250466|gb|EFU30462.1| pyruvate:ferredoxin oxidoreductase [Prevotella buccae ATCC 33574]
          Length = 1195

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 26/82 (31%), Gaps = 16/82 (19%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTR------------R 92
           RG  A        E CI C  C  +CP   I     +   +                   
Sbjct: 680 RGVAAFVPTW-ASENCIQCNKCSYVCPHACIRPFVLDENEKAGFNEPTLDVLAPKQLKGM 738

Query: 93  TVRYDIDMIKCIYCGLCQEACP 114
             R ++ ++ C  CG C + CP
Sbjct: 739 QFRIEVSVLDCTGCGNCADVCP 760


>gi|303251991|ref|ZP_07338162.1| electron transport complex protein RnfC [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|302649421|gb|EFL79606.1| electron transport complex protein RnfC [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
          Length = 729

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 34/107 (31%), Gaps = 3/107 (2%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E  CI C  C   CP   +  +               +  +  CI CG+C   CP  
Sbjct: 379 PEPERSCIRCSSCSDACPVG-LLPQQLYWYARSEDHDKSKEYHLDACIECGVCAYVCP-S 436

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            I     F        E+    ++      R+E+   R +  +   R
Sbjct: 437 YIPLIQYFRQEKAKITEIEEKAKKAEEAKARFEAREAR-LQKEKDAR 482


>gi|301061154|ref|ZP_07201943.1| putative CoB--CoM heterodisulfide reductase iron-sulfur subunit A
           [delta proteobacterium NaphS2]
 gi|300444696|gb|EFK08672.1| putative CoB--CoM heterodisulfide reductase iron-sulfur subunit A
           [delta proteobacterium NaphS2]
          Length = 647

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 19/61 (31%), Gaps = 2/61 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              +C+    C   C  +               +  R  ++   C  CG C   CP +AI
Sbjct: 562 DLNKCLGTGTCVNACIVEGALSLVEMDVDG--EKVKRAQVNPALCTGCGACVAVCPENAI 619

Query: 119 V 119
            
Sbjct: 620 N 620


>gi|291520273|emb|CBK75494.1| 4Fe-4S binding domain [Butyrivibrio fibrisolvens 16/4]
          Length = 56

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 11/61 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C++C  CE  CP  AI+               ++ ID   C+ CG C   CP  AI +
Sbjct: 7   DSCVSCGTCEPECPVGAISQGD-----------SQFQIDETACVECGTCAGVCPTGAISQ 55

Query: 121 G 121
           G
Sbjct: 56  G 56


>gi|325681301|ref|ZP_08160830.1| protein HymB [Ruminococcus albus 8]
 gi|324106992|gb|EGC01279.1| protein HymB [Ruminococcus albus 8]
          Length = 378

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 10/66 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L +Y    ++C  C LC   CPA AIT                + ID  KCI CG+C   
Sbjct: 320 LLQYEIVADKCKGCTLCARNCPAGAITGT----------VKNPHVIDTDKCIKCGVCMSN 369

Query: 113 CPVDAI 118
           C   AI
Sbjct: 370 CKFGAI 375



 Score = 37.4 bits (85), Expect = 0.60,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 17/43 (39%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            I+         +  ++Y+I   KC  C LC   CP  AI   
Sbjct: 306 HIKDKKCPAGVCKNLLQYEIVADKCKGCTLCARNCPAGAITGT 348


>gi|291280505|ref|YP_003497340.1| ferredoxin-dependent glutamate synthase subunit alpha
           [Deferribacter desulfuricans SSM1]
 gi|290755207|dbj|BAI81584.1| ferredoxin-dependent glutamate synthase, alpha subunit
           [Deferribacter desulfuricans SSM1]
          Length = 546

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 28/85 (32%), Gaps = 14/85 (16%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCH--------------DGTRRTVRYDI 98
             +     +RC  C  C A CP +AI      R                       +   
Sbjct: 15  FWQIEYKHDRCTLCGRCVAACPFKAIEARVERRRKVISDDITPNPKVIFQTVPVIKQVVD 74

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPN 123
           +   C  CG+C++ CP DAI    N
Sbjct: 75  EYNFCRGCGICEKVCPNDAIRPVRN 99


>gi|268611863|ref|ZP_06145590.1| electron transport complex, RnfABCDGE type, B subunit [Ruminococcus
           flavefaciens FD-1]
          Length = 268

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 11/62 (17%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           + +  CI CK+CE  CP++AI +E+               ID  KC  CG C  ACPV  
Sbjct: 209 SCKNGCIGCKICEKKCPSEAIKVEN-----------FHASIDYEKCTNCGSCMAACPVKV 257

Query: 118 IV 119
           I 
Sbjct: 258 IH 259



 Score = 35.1 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 21/64 (32%), Gaps = 11/64 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +  CI    C  +C   AI +E+G              +    C  CG C   CP   I
Sbjct: 136 CKYGCIGLGDCVNVCEHGAIKVENG-----------VAKVIPSLCGACGQCAAVCPNQLI 184

Query: 119 VEGP 122
              P
Sbjct: 185 SIKP 188


>gi|260582611|ref|ZP_05850400.1| electron transport complex protein RnfC [Haemophilus influenzae
           NT127]
 gi|260094283|gb|EEW78182.1| electron transport complex protein RnfC [Haemophilus influenzae
           NT127]
          Length = 645

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 12/101 (11%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C   CP   +  +               +  +  CI CG+C   CP   I  
Sbjct: 376 QACIRCSSCSDACPVN-LMPQQLYWFARSEDHKKSEEYALKDCIECGICAYVCPSH-IPL 433

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161
              F      RQE    K ++    ++ +      I  ++ 
Sbjct: 434 IQYF------RQE----KAKIWQIKEKQKKSDEAKIRFEAK 464


>gi|238916167|ref|YP_002929684.1| NADH dehydrogenase I chain G [Eubacterium eligens ATCC 27750]
 gi|238871527|gb|ACR71237.1| NADH dehydrogenase I chain G [Eubacterium eligens ATCC 27750]
          Length = 560

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 21/68 (30%), Gaps = 3/68 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGT---RRTVRYDIDMIKCIYCGLCQEACPV 115
             ++CI C  C  +C                          +I    C  CG C   CPV
Sbjct: 141 DAQKCIKCMRCVQVCDNIQGMHIWDVVNTGSRTTVNVRANKNIAETACTLCGQCVSNCPV 200

Query: 116 DAIVEGPN 123
            A+ E  +
Sbjct: 201 GALTERDD 208


>gi|170290840|ref|YP_001737656.1| pyruvate:ferredoxin oxidoreductase, delta subunit [Candidatus
           Korarchaeum cryptofilum OPF8]
 gi|170174920|gb|ACB07973.1| Pyruvate:ferredoxin oxidoreductase, delta subunit [Candidatus
           Korarchaeum cryptofilum OPF8]
          Length = 91

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 10/72 (13%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           GE A+ +    E +CI C LC   CP      +                 D+  C  CG+
Sbjct: 27  GEWAVFQPKIDESKCIKCGLCWMYCPDSVYRWDGESVPVP----------DLDHCKGCGI 76

Query: 109 CQEACPVDAIVE 120
           C+  CP  AI  
Sbjct: 77  CEVECPTKAIQM 88



 Score = 33.9 bits (76), Expect = 7.9,   Method: Composition-based stats.
 Identities = 14/48 (29%), Positives = 16/48 (33%)

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
            A+   S      G     +  ID  KCI CGLC   CP         
Sbjct: 14  GAVAFISAKEYPTGEWAVFQPKIDESKCIKCGLCWMYCPDSVYRWDGE 61


>gi|124002599|ref|ZP_01687451.1| 4Fe-4S binding domain protein [Microscilla marina ATCC 23134]
 gi|123991827|gb|EAY31214.1| 4Fe-4S binding domain protein [Microscilla marina ATCC 23134]
          Length = 592

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 10/67 (14%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R +   R   NG  +CI+C  C   C           +           +I    C+ CG
Sbjct: 505 RFKSRFRITTNG-GQCISCGNCSTYCEMGIDVRAYAQKGQ---------NIVRASCVGCG 554

Query: 108 LCQEACP 114
           +C   CP
Sbjct: 555 ICAAVCP 561


>gi|189423702|ref|YP_001950879.1| ferredoxin III, nif-specific [Geobacter lovleyi SZ]
 gi|189419961|gb|ACD94359.1| ferredoxin III, nif-specific [Geobacter lovleyi SZ]
          Length = 89

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 20/62 (32%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + CI C  C   C    + + +         + +       +CI CG C   CP +  
Sbjct: 23  DIDTCIGCGRCFKACSKGVLELTTIEVEEHYLEKDIMTIKHPGRCIGCGACGRTCPKNCF 82

Query: 119 VE 120
             
Sbjct: 83  TL 84


>gi|160898303|ref|YP_001563885.1| dihydropyrimidine dehydrogenase [Delftia acidovorans SPH-1]
 gi|160363887|gb|ABX35500.1| dihydroorotate dehydrogenase family protein [Delftia acidovorans
           SPH-1]
          Length = 439

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 11/66 (16%)

Query: 59  GEERCIACKLCEAICP---AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
            ++ CI C  C   C     QAIT               R+++D  +C+ C LC   CPV
Sbjct: 342 NQDSCIQCGRCHVACEDTSHQAITFSKEGGV-------RRFEVDDTECVGCNLCVSICPV 394

Query: 116 D-AIVE 120
              I  
Sbjct: 395 PECITM 400


>gi|118474239|ref|YP_891594.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Campylobacter
           fetus subsp. fetus 82-40]
 gi|118413465|gb|ABK81885.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Campylobacter
           fetus subsp. fetus 82-40]
          Length = 1184

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/133 (19%), Positives = 42/133 (31%), Gaps = 30/133 (22%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA------------------QAIT 79
           FE G+T    RG   +       E CI C  C  +CP                      +
Sbjct: 667 FEAGTTEYEKRGVGVMVPKWIE-ENCIQCNQCAFVCPHAVIRPFLIDEKELSAAPKGVKS 725

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP--VDAIVEGP--------NFEFATE 129
                +  +      +  +  + C  C LC + CP    ++V  P          E A  
Sbjct: 726 HVLDAKGKEIKEFKYKIQVSPLDCTGCELCAQNCPSKEKSLVMVPLGEEMDKGEQENADY 785

Query: 130 TRQELYYDKERLL 142
             + + Y K+ L+
Sbjct: 786 LFKNVKY-KDDLM 797


>gi|126178757|ref|YP_001046722.1| indolepyruvate ferredoxin oxidoreductase [Methanoculleus marisnigri
           JR1]
 gi|125861551|gb|ABN56740.1| Indolepyruvate ferredoxin oxidoreductase [Methanoculleus marisnigri
           JR1]
          Length = 589

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 26/74 (35%), Gaps = 15/74 (20%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAI-CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
           R     + Y    ERC  C  C +  CPA A   ++                    C  C
Sbjct: 526 RSGIKRKPYTVDPERCTGCGACRSFGCPAIAFVDKNATITE--------------LCAGC 571

Query: 107 GLCQEACPVDAIVE 120
           G+C + CP  AIV 
Sbjct: 572 GVCADICPSGAIVM 585


>gi|145220211|ref|YP_001130920.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing
           protein [Prosthecochloris vibrioformis DSM 265]
 gi|145206375|gb|ABP37418.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Chlorobium phaeovibrioides DSM 265]
          Length = 1182

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/102 (17%), Positives = 27/102 (26%), Gaps = 24/102 (23%)

Query: 58  NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRYDID--MI 101
              + CI C  C  +CP                A            +   ++Y I     
Sbjct: 689 WESDLCIECGKCAMVCPHAAIRAKVYDPKFLENAPRTFKSIEAKGTSWAGMKYTIQVAPE 748

Query: 102 KCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLN 143
            C  C +C   CP          + A   R+ L    +  L 
Sbjct: 749 DCTGCRICANICPAR--------DKADPERKALVMQPQEPLR 782


>gi|95931038|ref|ZP_01313766.1| ferredoxin-dependent glutamate synthase [Desulfuromonas acetoxidans
           DSM 684]
 gi|95132934|gb|EAT14605.1| ferredoxin-dependent glutamate synthase [Desulfuromonas acetoxidans
           DSM 684]
          Length = 547

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 28/84 (33%), Gaps = 14/84 (16%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPR---------CHDGTRRTVRYDIDM---- 100
            +      RC  C  C A C  +AI  +   R              R +    I      
Sbjct: 16  WKLRYDASRCTLCGSCVAACSFRAIEPKIERRRMVFSEGDLPDPRARFSAVPVIQQVNSL 75

Query: 101 -IKCIYCGLCQEACPVDAIVEGPN 123
              C  CG+C++ CP DAI    N
Sbjct: 76  KNYCRGCGICEKVCPNDAIAPVRN 99


>gi|53728861|ref|ZP_00348259.1| COG4656: Predicted NADH:ubiquinone oxidoreductase, subunit RnfC
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126207655|ref|YP_001052880.1| electron transport complex protein RnfC [Actinobacillus
           pleuropneumoniae L20]
 gi|126096447|gb|ABN73275.1| electron transport complex protein RnfC [Actinobacillus
           pleuropneumoniae serovar 5b str. L20]
          Length = 770

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 34/107 (31%), Gaps = 3/107 (2%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E  CI C  C   CP   +  +               +  +  CI CG+C   CP  
Sbjct: 379 PEPERSCIRCSSCSDACPVG-LLPQQLYWYARSEDHDKSKEYHLDACIECGVCAYVCP-S 436

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            I     F        E+    ++      R+E+   R +  +   R
Sbjct: 437 YIPLIQYFRQEKAKITEIEEKAKKAEEAKARFEAREAR-LQKEKDAR 482


>gi|303250916|ref|ZP_07337107.1| electron transport complex protein RnfC [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|302650222|gb|EFL80387.1| electron transport complex protein RnfC [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 770

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 34/107 (31%), Gaps = 3/107 (2%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E  CI C  C   CP   +  +               +  +  CI CG+C   CP  
Sbjct: 379 PEPERSCIRCSSCSDACPVG-LLPQQLYWYARSEDHDKSKEYHLDACIECGVCAYVCP-S 436

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            I     F        E+    ++      R+E+   R +  +   R
Sbjct: 437 YIPLIQYFRQEKAKITEIEEKAKKAEEAKARFEAREAR-LQKEKDAR 482


>gi|238762546|ref|ZP_04623516.1| Pyruvate-flavodoxin oxidoreductase [Yersinia kristensenii ATCC
           33638]
 gi|238699191|gb|EEP91938.1| Pyruvate-flavodoxin oxidoreductase [Yersinia kristensenii ATCC
           33638]
          Length = 1177

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/135 (16%), Positives = 32/135 (23%), Gaps = 36/135 (26%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73
            +      L        +   P        +   +   A        + C  C  C A C
Sbjct: 646 MLAGLGDAL------PVSAFPPDGTWPVGTTQWEKRNIAEDIPIWQPDLCTQCNHCVAAC 699

Query: 74  PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           P  A                   +++   R   G +      +    C  C LC E CP 
Sbjct: 700 PHSAIRAKVVQPNAMLGAPESLQSLDVKARDMRGQKY--VLQVAPEDCTGCNLCYEVCPA 757

Query: 116 --------DAIVEGP 122
                    AI   P
Sbjct: 758 KDRQNPEIKAINMQP 772


>gi|258405501|ref|YP_003198243.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfohalobium retbaense DSM 5692]
 gi|257797728|gb|ACV68665.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Desulfohalobium retbaense DSM 5692]
          Length = 793

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 20/58 (34%), Gaps = 4/58 (6%)

Query: 59  GEERCIACKLC--EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
               C +C  C    +C           R   G    +  D    KCI CG C +ACP
Sbjct: 725 CAAECASCGACRDCGLCIEICPQTAINRRQLSGEDFEMVAD--PEKCIGCGFCAQACP 780



 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 4/38 (10%)

Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140
           C  CGLC E CP  AI        + E  + +  D E+
Sbjct: 735 CRDCGLCIEICPQTAINRRQ---LSGEDFE-MVADPEK 768


>gi|298530775|ref|ZP_07018177.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298510149|gb|EFI34053.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 307

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 11/62 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +E CI C  C   CP QAI +                 +    C+ CG+C   CPV  +
Sbjct: 237 DQELCIKCGECAQACPFQAIAMSREGPV-----------VSQDLCMGCGVCVSRCPVQGL 285

Query: 119 VE 120
             
Sbjct: 286 KL 287



 Score = 40.5 bits (93), Expect = 0.084,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 13/27 (48%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPN 123
           D D   CI CG C +ACP  AI     
Sbjct: 235 DADQELCIKCGECAQACPFQAIAMSRE 261


>gi|210621816|ref|ZP_03292845.1| hypothetical protein CLOHIR_00790 [Clostridium hiranonis DSM 13275]
 gi|210154580|gb|EEA85586.1| hypothetical protein CLOHIR_00790 [Clostridium hiranonis DSM 13275]
          Length = 578

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 8/104 (7%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93
           I+ P+ +      +  +  L R  +   +CI C  C  +C     T       + G+R  
Sbjct: 119 IDLPYNQKFKKKPWNKDFPLIRDSS---KCIKCMRCVQVCENVQNTRIWE-VGNTGSRTD 174

Query: 94  VRY----DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
           V       I+   C  CG C   CPV A+ E  + +   +   +
Sbjct: 175 VVVSLNRKIEESDCALCGQCITHCPVGALRERDDVDKVFDALAD 218


>gi|165975623|ref|YP_001651216.1| electron transport complex protein RnfC [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|165875724|gb|ABY68772.1| putative iron-sulfur binding NADH dehydrogenase [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 770

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 34/107 (31%), Gaps = 3/107 (2%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E  CI C  C   CP   +  +               +  +  CI CG+C   CP  
Sbjct: 379 PEPERSCIRCSSCSDACPVG-LLPQQLYWYARSEDHDKSKEYHLDACIECGVCAYVCP-S 436

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            I     F        E+    ++      R+E+   R +  +   R
Sbjct: 437 YIPLIQYFRQEKAKITEIEEKAKKAEEAKARFEAREAR-LQKEKDAR 482


>gi|225427605|ref|XP_002271392.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 605

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           K C   C      +++G  C + T  +    I    CI CG+C + CP +AI    
Sbjct: 19  KKCRQECKKSCPVVKTGKLCIEVTPASKIAFISEELCIGCGICVKKCPFEAIQIIN 74


>gi|153879377|ref|ZP_02004810.1| Ferredoxin [Beggiatoa sp. PS]
 gi|152064159|gb|EDN65190.1| Ferredoxin [Beggiatoa sp. PS]
          Length = 93

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/98 (29%), Positives = 37/98 (37%), Gaps = 17/98 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC---- 106
             L       + CI C +CE  CP  AI+                Y ID   C  C    
Sbjct: 3   KKLIMALYITDECINCDVCEPECPNGAISQGEE-----------IYIIDPNLCTECVGHY 51

Query: 107 --GLCQEACPVDAIVEGPNFEFATETRQELYYDKERLL 142
               C + CPVD I + PN E + E  +E YY   + L
Sbjct: 52  ETSQCVDVCPVDCIPKDPNHEESEEKLREKYYRLTKEL 89


>gi|90418565|ref|ZP_01226477.1| putative 4Fe-4S ferredoxin, iron-sulfur binding protein
           [Aurantimonas manganoxydans SI85-9A1]
 gi|90338237|gb|EAS51888.1| putative 4Fe-4S ferredoxin, iron-sulfur binding protein
           [Aurantimonas manganoxydans SI85-9A1]
          Length = 576

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 24/74 (32%), Gaps = 9/74 (12%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               + C  C  C   CP  A++          +            C+ CGLC+  CP  
Sbjct: 416 HVQTDGCTLCHACVTACPTGALSASEDRPLLSFSH---------GACVQCGLCESTCPEQ 466

Query: 117 AIVEGPNFEFATET 130
            I   P  +FA   
Sbjct: 467 VITLEPTLDFAAWN 480



 Score = 40.1 bits (92), Expect = 0.10,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 15/58 (25%), Gaps = 11/58 (18%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
             C  C   C  QAI                   ID   C  CG C   CP  A    
Sbjct: 186 TGCTRCLDACAMQAIAPAGE-----------HVTIDAYVCAGCGNCAAVCPTGAASYT 232


>gi|150015660|ref|YP_001307914.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Clostridium beijerinckii NCIMB 8052]
 gi|149902125|gb|ABR32958.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Clostridium
           beijerinckii NCIMB 8052]
          Length = 252

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 18/85 (21%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            N  E+CI+C +C+ +CP   I IE+                 + KC  C  C   CP +
Sbjct: 180 FNVNEKCISCNMCKKVCPVDNIVIENNRPK------------WLGKCTDCMACINICPKE 227

Query: 117 AIVEG------PNFEFATETRQELY 135
           AI  G        +      R+EL 
Sbjct: 228 AINIGKSTIKKNRYLNPYIKREELI 252


>gi|189345592|ref|YP_001942121.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chlorobium
           limicola DSM 245]
 gi|189339739|gb|ACD89142.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chlorobium
           limicola DSM 245]
          Length = 517

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 16/85 (18%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           EKG+     R    LR           C  C          +E+  +  DG       D 
Sbjct: 41  EKGTFPDTRRYFTVLR-----------CNHCAEPPCVDICPVEALQKRPDG-----IVDF 84

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPN 123
           D  +CI C  C +ACP +A+   P+
Sbjct: 85  DSRRCIGCKACAQACPYNALYIDPD 109



 Score = 42.0 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 7/75 (9%)

Query: 56  YPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTRRTVRYDIDMIKCIYCGL-- 108
           +     +CI C  C   C ++                 GT    R    +++C +C    
Sbjct: 5   FVIDARKCIGCHACTVACKSENQVPLGVNRTWVKYVEKGTFPDTRRYFTVLRCNHCAEPP 64

Query: 109 CQEACPVDAIVEGPN 123
           C + CPV+A+ + P+
Sbjct: 65  CVDICPVEALQKRPD 79



 Score = 40.9 bits (94), Expect = 0.054,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 36/132 (27%), Gaps = 32/132 (24%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLR--YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59
           R +   V      +    +F  LR  +  +       P E     P              
Sbjct: 34  RTWVKYVEKGTFPDTRR-YFTVLRCNHCAEPPCVDICPVEALQKRPD-------GIVDFD 85

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG---------LCQ 110
             RCI CK C   CP  A+ I+                    KC YC           C 
Sbjct: 86  SRRCIGCKACAQACPYNALYIDPD-------------THTSAKCNYCAHRKEVGLQPACV 132

Query: 111 EACPVDAIVEGP 122
             CP  AIV G 
Sbjct: 133 AICPQQAIVSGD 144


>gi|330830389|ref|YP_004393341.1| pyridine nucleotide-disulfide oxidoreductase family protein
           [Aeromonas veronii B565]
 gi|328805525|gb|AEB50724.1| Pyridine nucleotide-disulfide oxidoreductase family protein
           [Aeromonas veronii B565]
          Length = 548

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 22/89 (24%), Gaps = 3/89 (3%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P           G            RC +C  C               +          Y
Sbjct: 461 PAWARDDFGEIIGGLDEVAARYEAARCYSCGNCFEC---DGCYGSCPEQAIAKLGPGKGY 517

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
            +D  +C  CG C + CP  AI      E
Sbjct: 518 QVDAARCTGCGACYDQCPCHAIELRQPEE 546


>gi|329955179|ref|ZP_08296136.1| 4Fe-4S binding domain protein [Bacteroides clarus YIT 12056]
 gi|328526178|gb|EGF53197.1| 4Fe-4S binding domain protein [Bacteroides clarus YIT 12056]
          Length = 608

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 27/74 (36%), Gaps = 6/74 (8%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                 +  C  C +C   CP  AIT              +   ID   CI C +C++ C
Sbjct: 1   MIDKLAKIECCGCNVCGDACPKGAITFFEDNEG------FLYPSIDDDLCIKCNICEKVC 54

Query: 114 PVDAIVEGPNFEFA 127
           PV  I      +FA
Sbjct: 55  PVINIDALKQNDFA 68


>gi|312137027|ref|YP_004004364.1| archaeoflavoprotein, mj0208 family [Methanothermus fervidus DSM
           2088]
 gi|311224746|gb|ADP77602.1| archaeoflavoprotein, MJ0208 family [Methanothermus fervidus DSM
           2088]
          Length = 234

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 9/61 (14%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           CK CE    A A   ++              +I+++KCI CG C++ACP +AIV G   E
Sbjct: 147 CKNCETCKAAAACPTDAIIPGR---------EIELLKCIGCGSCEKACPYNAIVGGKIIE 197

Query: 126 F 126
            
Sbjct: 198 I 198


>gi|308273572|emb|CBX30174.1| hypothetical protein N47_D29830 [uncultured Desulfobacterium sp.]
          Length = 289

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 14/62 (22%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +  C  C LC  +C   AI  +              + +D ++C  CG+C   CP  AI
Sbjct: 64  DKRFCTECGLCRDLCRWNAINDD--------------FIVDDLECEGCGVCVYFCPEKAI 109

Query: 119 VE 120
             
Sbjct: 110 EF 111


>gi|307244979|ref|ZP_07527076.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307253932|ref|ZP_07535784.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307258386|ref|ZP_07540127.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|306854144|gb|EFM86352.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306863136|gb|EFM95078.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306867570|gb|EFM99417.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 725

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 34/107 (31%), Gaps = 3/107 (2%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E  CI C  C   CP   +  +               +  +  CI CG+C   CP  
Sbjct: 379 PEPERSCIRCSSCSDACPVG-LLPQQLYWYARSEDHDKSKEYHLDACIECGVCAYVCP-S 436

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            I     F        E+    ++      R+E+   R +  +   R
Sbjct: 437 YIPLIQYFRQEKAKITEIEEKAKKAEEAKARFEAREAR-LQKEKDAR 482


>gi|301058772|ref|ZP_07199759.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300447114|gb|EFK10892.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 743

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 22/70 (31%), Gaps = 10/70 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +        RC  CK C   CP  AI  +                 +  +C  CG+C  A
Sbjct: 527 MTYPEFNMNRCTQCKRCTEECPFGAINEDEKANPLP----------NPTRCRRCGVCMGA 576

Query: 113 CPVDAIVEGP 122
           CP   I    
Sbjct: 577 CPERIISFKN 586



 Score = 34.7 bits (78), Expect = 4.5,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 31/103 (30%), Gaps = 12/103 (11%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRF-----RGEHALRRYPNGEERCIACKLCEAICPAQA 77
            L+Y F     I +P+E   T         R     +   +     +    C  +     
Sbjct: 459 TLKYGFPDSHFICFPYETRRTGIYSAGCVKRPMETAKALDDAAGAAMKAVQCSELTAVG- 517

Query: 78  ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
                    H  +      + +M +C  C  C E CP  AI E
Sbjct: 518 ------KAVHPRSGDMTYPEFNMNRCTQCKRCTEECPFGAINE 554


>gi|291613328|ref|YP_003523485.1| electron transport complex, RnfABCDGE type, C subunit [Sideroxydans
           lithotrophicus ES-1]
 gi|291583440|gb|ADE11098.1| electron transport complex, RnfABCDGE type, C subunit [Sideroxydans
           lithotrophicus ES-1]
          Length = 492

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 22/68 (32%), Gaps = 2/68 (2%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             CI C  C   CP   + +E   R              +  CI CG C   CP   I  
Sbjct: 365 SPCIRCSTCVRACPVGLLPLEMASRIRVSDLAGAV-AFGLKDCIACGSCSYVCPAH-IPL 422

Query: 121 GPNFEFAT 128
              F +A 
Sbjct: 423 VHYFNYAK 430


>gi|225405649|ref|ZP_03760838.1| hypothetical protein CLOSTASPAR_04870 [Clostridium asparagiforme
           DSM 15981]
 gi|225042823|gb|EEG53069.1| hypothetical protein CLOSTASPAR_04870 [Clostridium asparagiforme
           DSM 15981]
          Length = 218

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 14/94 (14%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
           +FF+ +   +   ++           AL  Y    ++C  C LC   CPA AI       
Sbjct: 137 HFFRDEYEAHIKEKRCPAGVC----KALLSYVIDRDKCRGCTLCARTCPAGAIVGS---- 188

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
                     + ID+ KCI CG C E C   AI 
Sbjct: 189 ------VKNPHVIDLNKCIKCGACMEKCKFGAIY 216


>gi|219853289|ref|YP_002467721.1| methanogenesis marker 16 metalloprotein [Methanosphaerula palustris
           E1-9c]
 gi|219547548|gb|ACL17998.1| methanogenesis marker 16 metalloprotein [Methanosphaerula palustris
           E1-9c]
          Length = 414

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 16/66 (24%)

Query: 54  RRYPNGEERCIACKLC--EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            R  N    C+ C+ C    +CP  AI+  +               ID  +C+ CG C +
Sbjct: 311 HRIQNDPSGCVHCETCRAATLCPTGAISPGA--------------VIDRDRCVNCGTCVQ 356

Query: 112 ACPVDA 117
            CP  A
Sbjct: 357 VCPGPA 362


>gi|210631904|ref|ZP_03297116.1| hypothetical protein COLSTE_01006 [Collinsella stercoris DSM 13279]
 gi|210159829|gb|EEA90800.1| hypothetical protein COLSTE_01006 [Collinsella stercoris DSM 13279]
          Length = 401

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 3/63 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV---RYDIDMIKCIYCGLCQEACPV 115
              RC+ C  CE IC   A+             +TV      ID  +C+ CG C  AC  
Sbjct: 200 DASRCVGCHACERICAHGAVGFAGTRERVLKNGQTVTTPVASIDHERCVGCGRCIGACNQ 259

Query: 116 DAI 118
           DAI
Sbjct: 260 DAI 262


>gi|193215465|ref|YP_001996664.1| ferredoxin [Chloroherpeton thalassium ATCC 35110]
 gi|193088942|gb|ACF14217.1| electron transport complex, RnfABCDGE type, B subunit
           [Chloroherpeton thalassium ATCC 35110]
          Length = 296

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/88 (26%), Positives = 29/88 (32%), Gaps = 11/88 (12%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
           T+    E          +         E  CIAC+ C  +C   AI IE+          
Sbjct: 187 TLQPKRENRYFIACNSQDKGNIAKKMCEAACIACQKCVKVCEEDAIIIENNLA------- 239

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVE 120
                I   KC  CG C E CPV+    
Sbjct: 240 ----KIIQEKCTECGKCVEVCPVNVNCI 263



 Score = 41.6 bits (96), Expect = 0.034,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 28/84 (33%), Gaps = 11/84 (13%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E       +    A       +  C+    C A C   A+++E+G              I
Sbjct: 118 EYVGIQDCWAAIQAFVGPKQCKYSCMGLGSCIAYCDFGAMSLENG-----------LIKI 166

Query: 99  DMIKCIYCGLCQEACPVDAIVEGP 122
           D  +C  CG C  ACP   +   P
Sbjct: 167 DDERCTGCGACIPACPTGVLTLQP 190



 Score = 38.5 bits (88), Expect = 0.28,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 6/71 (8%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDG------TRRTVRYDIDMIKCIYCGLCQEA 112
            +ERC  C  C   CP   +T++               +  +   +    CI C  C + 
Sbjct: 167 DDERCTGCGACIPACPTGVLTLQPKRENRYFIACNSQDKGNIAKKMCEAACIACQKCVKV 226

Query: 113 CPVDAIVEGPN 123
           C  DAI+   N
Sbjct: 227 CEEDAIIIENN 237


>gi|154506154|ref|ZP_02042892.1| hypothetical protein RUMGNA_03696 [Ruminococcus gnavus ATCC 29149]
 gi|153793653|gb|EDN76073.1| hypothetical protein RUMGNA_03696 [Ruminococcus gnavus ATCC 29149]
          Length = 296

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 15/69 (21%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           + RY    ++CI C  C+ +C      +E               + + ++CI CG C+ A
Sbjct: 240 IFRYRLDTDKCINCGKCKKVCQMNIDPVE---------------NCNHLECIRCGRCKNA 284

Query: 113 CPVDAIVEG 121
           CPVDAI  G
Sbjct: 285 CPVDAISYG 293


>gi|21226158|ref|NP_632080.1| heterodisulfate reductase subunit A [Methanosarcina mazei Go1]
 gi|41017211|sp|Q8Q0T0|HDRA_METMA RecName: Full=CoB--CoM heterodisulfide reductase 1 iron-sulfur
           subunit A
 gi|20904385|gb|AAM29752.1| Heterodisulfate reductase, subunit A [Methanosarcina mazei Go1]
          Length = 793

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 12/69 (17%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               ++CI C+ C  +C    I+I                 +D + C  CG C  ACPV 
Sbjct: 574 HVDPDKCIGCRTCVEVCKFGKISIVDKKAV-----------VDEVSCYGCGDCSAACPVG 622

Query: 117 AIVEGPNFE 125
           AI    NFE
Sbjct: 623 AIQM-RNFE 630



 Score = 42.4 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 29/101 (28%), Gaps = 11/101 (10%)

Query: 29  KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88
               T+    E    S      H              CK C  +C          P  + 
Sbjct: 206 HPNITLYTYSEVTDISGSVGKFHVRVTRKPRFVLEDKCKGCVDLCSEVCPVEIENPMNYG 265

Query: 89  GTRRTVRYD-----------IDMIKCIYCGLCQEACPVDAI 118
             +    Y            ID   C+ CGLCQ ACP +A+
Sbjct: 266 IGKSRAIYMPIPQSVPQVVLIDPDHCVGCGLCQLACPAEAV 306


>gi|14325065|dbj|BAB59990.1| pyruvate ferredoxin oxidoreductasse [POR] delta subunit
           [Thermoplasma volcanium GSS1]
          Length = 95

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR--RTVRYDIDMIKCIYCGLC 109
            +++     ++CI C +C   CP  AI I++G       R  +     ID   C  CG+C
Sbjct: 19  RIQKPTIQYDKCIRCMICWKYCPDNAIEIKTGDEKAPNERVAKMEFPAIDYKFCKGCGIC 78

Query: 110 QEACPVDAIVE 120
              CP   I  
Sbjct: 79  ANECPEKCIDM 89


>gi|114561972|ref|YP_749485.1| formate dehydrogenase, alpha subunit [Shewanella frigidimarina
           NCIMB 400]
 gi|114333265|gb|ABI70647.1| formate dehydrogenase, alpha subunit [Shewanella frigidimarina
           NCIMB 400]
          Length = 1406

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 15/75 (20%)

Query: 59  GEERCIACKLCEAICPAQ---------AITIESGPRCH------DGTRRTVRYDIDMIKC 103
              RCI+C  C   C  Q         A + ++ P         +  R      ++   C
Sbjct: 626 DANRCISCAACIDACHQQSGHNVISFEANSYQALPDAATTGISRNAPRVGFTASMNDSDC 685

Query: 104 IYCGLCQEACPVDAI 118
           + CG C + CP  A+
Sbjct: 686 VQCGNCVQVCPTGAL 700


>gi|322805278|emb|CBZ02842.1| anaerobic sulfite reductase subunit C [Clostridium botulinum H04402
           065]
          Length = 321

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/78 (20%), Positives = 21/78 (26%), Gaps = 8/78 (10%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
              G   +      + RC+ C+ C   C                     +   D  KCI 
Sbjct: 155 HDFGILGMTEPQYDKYRCVGCQACVNNC--------KKRVTGALRFENFKVIRDHEKCIG 206

Query: 106 CGLCQEACPVDAIVEGPN 123
           CG C   CP  A      
Sbjct: 207 CGECVGKCPTGAWTRSKE 224


>gi|317471056|ref|ZP_07930431.1| 4Fe-4S binding domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
 gi|316901497|gb|EFV23436.1| 4Fe-4S binding domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
          Length = 202

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/97 (24%), Positives = 33/97 (34%), Gaps = 18/97 (18%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
              +     EE+C  C LC + C   AI +  G              I    C   G C 
Sbjct: 1   MIRQIIKIDEEKCNGCGLCASACHEGAIQMIGGKAKL----------IRDDYCDGLGNCL 50

Query: 111 EACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDR 147
             CP  AI        + E R+   Y+K  +L N  +
Sbjct: 51  PMCPTGAI--------SFEDREAPDYNKAAVLENQRK 79


>gi|315609147|ref|ZP_07884116.1| electron transport complex protein RnfB [Prevotella buccae ATCC
           33574]
 gi|315249217|gb|EFU29237.1| electron transport complex protein RnfB [Prevotella buccae ATCC
           33574]
          Length = 306

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 25/82 (30%), Gaps = 11/82 (13%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P  +         +         E  CI C  CE  C   AITI                
Sbjct: 198 PKGRRVYVLCVNKDKGAVAKKACEVACIGCGKCEKECKFDAITITDNLSY---------- 247

Query: 97  DIDMIKCIYCGLCQEACPVDAI 118
            ID  KC  C  C + CP  AI
Sbjct: 248 -IDFNKCRLCTKCVDVCPTGAI 268



 Score = 41.6 bits (96), Expect = 0.036,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 30/83 (36%), Gaps = 12/83 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI----------DMIKCIYCGL 108
            E++C AC  C   CP     IE   +   G R  V                + CI CG 
Sbjct: 172 DEDKCTACGACAKACPR--HIIELRKKGPKGRRVYVLCVNKDKGAVAKKACEVACIGCGK 229

Query: 109 CQEACPVDAIVEGPNFEFATETR 131
           C++ C  DAI    N  +    +
Sbjct: 230 CEKECKFDAITITDNLSYIDFNK 252


>gi|307133273|ref|YP_003885289.1| Pyridine nucleotide-disulfide oxidoreductase family protein
           [Dickeya dadantii 3937]
 gi|306530802|gb|ADN00733.1| Pyridine nucleotide-disulfide oxidoreductase family protein
           [Dickeya dadantii 3937]
          Length = 664

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 31/86 (36%), Gaps = 15/86 (17%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRR 92
            YP  +    PR R  H  +   +    C  C    C  +CP QA+            R+
Sbjct: 30  RYPENRDDFHPRIRVFH--QGEQHTAVTCRHCEDSPCAKVCPTQALV-----------RK 76

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAI 118
                +   KCI C  C  ACP  AI
Sbjct: 77  QDGIQLVAEKCIGCKTCVLACPFGAI 102



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 11/74 (14%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC---GLCQEACPVDA 117
           E+CI CK C   CP  AI++E+  +     +           CI       C EACP  A
Sbjct: 85  EKCIGCKTCVLACPFGAISVETQSQGAIAHK--------CDLCIGRPEGQACVEACPTQA 136

Query: 118 IVEGPNFEFATETR 131
           +          + R
Sbjct: 137 LHLVSERSLEEQRR 150



 Score = 37.8 bits (86), Expect = 0.56,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 20/66 (30%), Gaps = 6/66 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY----DIDMIKCIYCGL--CQEA 112
             + CI C  CE  C              D   R   +        + C +C    C + 
Sbjct: 8   NAKDCIGCNACEIACVISHNHGRYPENRDDFHPRIRVFHQGEQHTAVTCRHCEDSPCAKV 67

Query: 113 CPVDAI 118
           CP  A+
Sbjct: 68  CPTQAL 73


>gi|298375410|ref|ZP_06985367.1| radical SAM domain-containing protein [Bacteroides sp. 3_1_19]
 gi|298267910|gb|EFI09566.1| radical SAM domain-containing protein [Bacteroides sp. 3_1_19]
          Length = 301

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 11/62 (17%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            ++CI C  C  +CP  A+T+       +              C  CG C E CP  A+ 
Sbjct: 49  RKKCIGCGACVDVCPTGALTLTEAGIVTN-----------RSLCRTCGRCAEVCPTLAME 97

Query: 120 EG 121
             
Sbjct: 98  MS 99


>gi|296085461|emb|CBI29193.3| unnamed protein product [Vitis vinifera]
          Length = 625

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           K C   C      +++G  C + T  +    I    CI CG+C + CP +AI    
Sbjct: 39  KKCRQECKKSCPVVKTGKLCIEVTPASKIAFISEELCIGCGICVKKCPFEAIQIIN 94


>gi|257790533|ref|YP_003181139.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|257474430|gb|ACV54750.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
          Length = 300

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/132 (20%), Positives = 40/132 (30%), Gaps = 26/132 (19%)

Query: 4   FRCNVSFLFLKEFVGAFFLC-LRYFFKAKTTINYPFEKGSTS----PRFRGEHALRRYPN 58
            R  +  LF  +      +  L   F        PF K             + +L     
Sbjct: 182 IRSALGQLFTWKLFVLIAVVVLSVLF------YRPFCKWICPLGAFYALMNKVSLLGIRV 235

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              +C++C  C  +C                    V    +  +CI CG C  ACPVDAI
Sbjct: 236 DACKCVSCGTCSKVCQMD---------------VDVVRAPNHAECIRCGKCIGACPVDAI 280

Query: 119 VEGPNFEFATET 130
                 + + E 
Sbjct: 281 SYRYGLDVSEEK 292


>gi|227499382|ref|ZP_03929493.1| ferredoxin hydrogenase [Anaerococcus tetradius ATCC 35098]
 gi|227218586|gb|EEI83826.1| ferredoxin hydrogenase [Anaerococcus tetradius ATCC 35098]
          Length = 577

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 59  GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQEACPV 115
              +CI C+ CE +C   Q +   +       T     ++  +    C +CG C   CP 
Sbjct: 147 DPNKCILCRRCETMCNEVQTVGALAEVGRGFYTHVGSSFNRSMFETTCTFCGQCLSVCPT 206

Query: 116 DAIVEGPN 123
            A+ E  N
Sbjct: 207 GALTEKNN 214


>gi|283795070|ref|ZP_06344223.1| putative ferredoxin [Clostridium sp. M62/1]
 gi|291077411|gb|EFE14775.1| putative ferredoxin [Clostridium sp. M62/1]
 gi|295115551|emb|CBL36398.1| hypothetical protein [butyrate-producing bacterium SM4/1]
          Length = 252

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 34/99 (34%), Gaps = 12/99 (12%)

Query: 27  FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC 86
           F +   ++   F  G  +  F       +       CI+C  C  +CP   I ++ G   
Sbjct: 153 FPEPAISLKDKFISGIVNSLFYTFFVRSKKFRVSSSCISCGRCAKLCPLGNIRMKEGRP- 211

Query: 87  HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
                      +    C +C  C   CPV+AI  G   E
Sbjct: 212 -----------VWGDDCTHCMACICRCPVNAIEYGSRTE 239


>gi|225568085|ref|ZP_03777110.1| hypothetical protein CLOHYLEM_04158 [Clostridium hylemonae DSM
           15053]
 gi|225163038|gb|EEG75657.1| hypothetical protein CLOHYLEM_04158 [Clostridium hylemonae DSM
           15053]
          Length = 263

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 29/89 (32%), Gaps = 11/89 (12%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
            +     P+++         +            CI CK+CE +C   A+ +         
Sbjct: 185 KRLIELVPYDQKHLVQCSSKDKGKDVMKACSVGCIGCKMCEKVCQFDAVKVVDNIAY--- 241

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                   ID  KC  CG C E CP   I
Sbjct: 242 --------IDSEKCTNCGACAEKCPKKII 262


>gi|147821791|emb|CAN65893.1| hypothetical protein VITISV_021090 [Vitis vinifera]
          Length = 599

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           K C   C      +++G  C + T  +    I    CI CG+C + CP +AI    
Sbjct: 19  KKCRQECKKSCPVVKTGKLCIEVTPASKIAFISEELCIGCGICVKKCPFEAIQIIN 74


>gi|126178577|ref|YP_001046542.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanoculleus marisnigri JR1]
 gi|125861371|gb|ABN56560.1| formylmethanofuran dehydrogenase, subunit G [Methanoculleus
           marisnigri JR1]
          Length = 90

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 6/82 (7%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR------YDIDMIKCIYCGLCQ 110
               ERC  C  C   CP  A+ + +           VR       D +   C  CG+C 
Sbjct: 6   HINMERCTGCNNCVVACPVDALELYTEDPATKEKIYKVRDGKAVILDFNSELCAGCGVCV 65

Query: 111 EACPVDAIVEGPNFEFATETRQ 132
           +ACP   I     +E   +TR+
Sbjct: 66  QACPYGVIKLVGPWESRAKTRK 87


>gi|325262544|ref|ZP_08129281.1| putative [Fe] hydrogenase, large subunit HymC [Clostridium sp. D5]
 gi|324032376|gb|EGB93654.1| putative [Fe] hydrogenase, large subunit HymC [Clostridium sp. D5]
          Length = 562

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 3/71 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV---RYDIDMIKCIYCGLCQEACPV 115
              +CI C  C   C                  +       D+    C+ CG C+  CP 
Sbjct: 141 DPNKCILCGDCVRTCDEIQGLGILDFAFRGSKMQVTPAFNKDLAQTDCVGCGQCRAVCPT 200

Query: 116 DAIVEGPNFEF 126
            AI    N E 
Sbjct: 201 GAITIKQNVEP 211


>gi|229518065|ref|ZP_04407509.1| electron transport complex protein RnfC [Vibrio cholerae RC9]
 gi|229344780|gb|EEO09754.1| electron transport complex protein RnfC [Vibrio cholerae RC9]
          Length = 725

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 25/86 (29%), Gaps = 10/86 (11%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
               P  K +        + L    N    CI C  C   CP   +     P+      +
Sbjct: 376 HAQVPITKTANCILAPTRNELTSSDNEMA-CIRCGQCAEACPVSLL-----PQQLQWHAK 429

Query: 93  TVRYDIDMI----KCIYCGLCQEACP 114
              +D         CI CG C   CP
Sbjct: 430 AEEFDKCEELDLKDCIECGACAYVCP 455



 Score = 35.5 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 10/13 (76%), Positives = 10/13 (76%)

Query: 103 CIYCGLCQEACPV 115
           CI CG C EACPV
Sbjct: 405 CIRCGQCAEACPV 417


>gi|167043325|gb|ABZ08029.1| putative 4Fe-4S binding domain protein [uncultured marine
           crenarchaeote HF4000_ANIW141N1]
          Length = 103

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 1/69 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+RCI C LC  IC      +        G +R   +     +CI  G C   CP  +I
Sbjct: 10  DEQRCIGCALCVEICTTLGPDVLRVKPVE-GWKRGKAFVFYPERCISDGACIGVCPTKSI 68

Query: 119 VEGPNFEFA 127
                  + 
Sbjct: 69  FWMRPMNYT 77


>gi|188585338|ref|YP_001916883.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350025|gb|ACB84295.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 588

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 10/66 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L       E+C  C++C+ ICP  AI  E              ++ID   CI C  C + 
Sbjct: 532 LTTIEVDPEKCSGCEICKQICPVDAIKGEKSE----------VHNIDSKVCIKCKECIDK 581

Query: 113 CPVDAI 118
           CP++AI
Sbjct: 582 CPLEAI 587



 Score = 34.3 bits (77), Expect = 5.4,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 19/40 (47%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            I +        +     ++D  KC  C +C++ CPVDAI
Sbjct: 518 HINNKYCRAGVCKNLTTIEVDPEKCSGCEICKQICPVDAI 557


>gi|159905698|ref|YP_001549360.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C6]
 gi|159887191|gb|ABX02128.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           maripaludis C6]
          Length = 132

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 10/67 (14%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           +     +E+CI C  C   CP  A++++S  +            +D  +CI C  C + C
Sbjct: 73  KMIQKDDEKCIDCGACVVHCPVGALSVDSEFKIL----------LDEEECIGCKNCAKIC 122

Query: 114 PVDAIVE 120
           PV+AI  
Sbjct: 123 PVNAIKI 129



 Score = 33.9 bits (76), Expect = 8.4,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 12/24 (50%)

Query: 101 IKCIYCGLCQEACPVDAIVEGPNF 124
            KCI CG C   CPV A+     F
Sbjct: 80  EKCIDCGACVVHCPVGALSVDSEF 103


>gi|150007689|ref|YP_001302432.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides distasonis
           ATCC 8503]
 gi|255013606|ref|ZP_05285732.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_7]
 gi|149936113|gb|ABR42810.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides distasonis
           ATCC 8503]
          Length = 596

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 59  GEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
              +CI C+ CE +C       A+T  +       +    R D+    C YCG C   CP
Sbjct: 148 NMNKCIMCRRCETMCNTIQTVGALTAVNRGFNAAVSTAFER-DMAGSTCSYCGQCVSVCP 206

Query: 115 VDAI 118
           V+A+
Sbjct: 207 VNAL 210


>gi|189423439|ref|YP_001950616.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Geobacter lovleyi SZ]
 gi|189419698|gb|ACD94096.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Geobacter lovleyi SZ]
          Length = 1193

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 16/73 (21%)

Query: 58  NGEERCIACKLCEAICPAQAITIE----------------SGPRCHDGTRRTVRYDIDMI 101
             E+ CI C +C  +CP  A+ ++                +  +      + +   +   
Sbjct: 691 WDEKLCIQCGICSFVCPHAAVRMKSFDGKLLKDAPKTYKSADCKIKGQEGKKLTVQVAPE 750

Query: 102 KCIYCGLCQEACP 114
            C  CG C   CP
Sbjct: 751 DCTGCGACAHNCP 763



 Score = 35.5 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 8/18 (44%), Positives = 10/18 (55%)

Query: 103 CIYCGLCQEACPVDAIVE 120
           CI CG+C   CP  A+  
Sbjct: 696 CIQCGICSFVCPHAAVRM 713


>gi|20093898|ref|NP_613745.1| ferredoxin [Methanopyrus kandleri AV19]
 gi|19886839|gb|AAM01675.1| Ferredoxin [Methanopyrus kandleri AV19]
          Length = 147

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/62 (41%), Positives = 30/62 (48%), Gaps = 12/62 (19%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            E C AC LCE  CP  AI +E   +            ID   C+ CGLC E CP DAI+
Sbjct: 14  HELCRACGLCEKECPTGAIEVEDSAK------------IDEKDCVRCGLCVEVCPFDAIL 61

Query: 120 EG 121
            G
Sbjct: 62  LG 63



 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 9/70 (12%)

Query: 59  GEERCIACKLCEAICPAQAI---------TIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
            E+ C+ C LC  +CP  AI            S        R  V   I   KC+ C  C
Sbjct: 41  DEKDCVRCGLCVEVCPFDAILLGRATCELPKGSYRIEVLTKRPEVSVRISESKCVGCQAC 100

Query: 110 QEACPVDAIV 119
             +CPV+A+ 
Sbjct: 101 SSSCPVEALF 110


>gi|328887633|emb|CAJ68747.2| putative iron-sulfur binding protein Tn1549-like, CTn5-Orf32
           [Clostridium difficile]
          Length = 296

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 15/69 (21%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           + RY   +++CI C  C+ +C      +E               + + ++CI CG C+ A
Sbjct: 240 IFRYRLDKDKCINCGKCKKVCQMNIDPVE---------------NCNHLECIRCGRCKNA 284

Query: 113 CPVDAIVEG 121
           CPVDAI  G
Sbjct: 285 CPVDAISYG 293


>gi|319790198|ref|YP_004151831.1| molybdopterin dinucleotide-binding region protein [Thermovibrio
           ammonificans HB-1]
 gi|317114700|gb|ADU97190.1| molybdopterin dinucleotide-binding region protein [Thermovibrio
           ammonificans HB-1]
          Length = 1172

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 29/84 (34%), Gaps = 2/84 (2%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E    +  +  E  L  YP  +      K+C+       ++         G  R     I
Sbjct: 60  ETPEINLFWIEEKELGEYPKAKLIFSQEKICKQCFEHPCVSACPFNAISVG--RGGVVVI 117

Query: 99  DMIKCIYCGLCQEACPVDAIVEGP 122
           D  KC  C  C  ACP +AIV   
Sbjct: 118 DDSKCTGCEKCVPACPFNAIVMDK 141



 Score = 38.5 bits (88), Expect = 0.27,   Method: Composition-based stats.
 Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 17/107 (15%)

Query: 25  RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84
           +  F+       PF   S     RG   +      + +C  C+ C   CP  AI ++ G 
Sbjct: 91  KQCFEHPCVSACPFNAISVG---RGGVVVI----DDSKCTGCEKCVPACPFNAIVMDKG- 142

Query: 85  RCHDGTRRTVRYDIDMIKCIYCG---LCQEACPVDAIVEGPNFEFAT 128
                  +  + DI   + +  G    C   CP  A+V G  ++ + 
Sbjct: 143 ------NKARKCDICFERTVKGGDVPRCVAVCPSGALVFGNLYKPSG 183


>gi|303256659|ref|ZP_07342673.1| periplasmic nitrate reductase, NapG [Burkholderiales bacterium
           1_1_47]
 gi|330999296|ref|ZP_08323013.1| ferredoxin-type protein NapG [Parasutterella excrementihominis YIT
           11859]
 gi|302860150|gb|EFL83227.1| periplasmic nitrate reductase, NapG [Burkholderiales bacterium
           1_1_47]
 gi|329575154|gb|EGG56705.1| ferredoxin-type protein NapG [Parasutterella excrementihominis YIT
           11859]
          Length = 252

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 3/80 (3%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ--AITIESGPRCHDGTRRTVR 95
            E    +    G  A+  Y     + + C++C   CP Q  AI I S PR          
Sbjct: 114 HELTDITEAKMGVAAIDHYTCLSWQGLRCEICYRDCPEQNKAIVIVSQPRQ-ISNHAMFV 172

Query: 96  YDIDMIKCIYCGLCQEACPV 115
            +I   KC  CGLC  +CP 
Sbjct: 173 PEIHPDKCTGCGLCVHSCPT 192


>gi|260687158|ref|YP_003218292.1| putative iron-sulfur-binding membrane protein [Clostridium
           difficile R20291]
 gi|260213175|emb|CBE04632.1| putative iron-sulfur-binding membrane protein [Clostridium
           difficile R20291]
          Length = 298

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 15/69 (21%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           + RY   +++CI C  C+ +C      +E               + + ++CI CG C+ A
Sbjct: 242 IFRYRLDKDKCINCGKCKKVCQMNIDPVE---------------NCNHLECIRCGRCKNA 286

Query: 113 CPVDAIVEG 121
           CPVDAI  G
Sbjct: 287 CPVDAISYG 295


>gi|206901891|ref|YP_002250294.1| periplasmic [Fe] hydrogenase 1 [Dictyoglomus thermophilum H-6-12]
 gi|206740994|gb|ACI20052.1| periplasmic [Fe] hydrogenase 1 [Dictyoglomus thermophilum H-6-12]
          Length = 666

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 3/70 (4%)

Query: 59  GEERCIACKLCEAICPAQ---AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
              +CI C  C  +C      A    +G            + +  ++C+YCG C   CP 
Sbjct: 140 DNTKCILCGDCVRVCEEVQGVAAIDIAGRGFQSKVTPAFGHSLADVECVYCGQCVAYCPT 199

Query: 116 DAIVEGPNFE 125
            A+    + +
Sbjct: 200 GALSIRNDID 209


>gi|170760254|ref|YP_001787599.1| iron-sulfur binding protein [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169407243|gb|ACA55654.1| CobQ/CobB/MinD/ParA family protein [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 281

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 24/67 (35%), Gaps = 15/67 (22%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E+ CI C  C++IC   AI                 + ID   C  CG C   CP +
Sbjct: 61  NIDEDVCIKCGKCKSICKFDAIEN---------------FKIDPFLCEGCGACTLTCPPN 105

Query: 117 AIVEGPN 123
           AI     
Sbjct: 106 AIKLEDE 112


>gi|167768515|ref|ZP_02440568.1| hypothetical protein CLOSS21_03074 [Clostridium sp. SS2/1]
 gi|167710039|gb|EDS20618.1| hypothetical protein CLOSS21_03074 [Clostridium sp. SS2/1]
 gi|291560482|emb|CBL39282.1| hydrogenases, Fe-only [butyrate-producing bacterium SSC/2]
          Length = 570

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 31/90 (34%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93
           ++ P++K      +   + L R  +   +C+ C           I   SG         +
Sbjct: 119 VDSPYKKEICIEEWDTRYPLVRDASKCVKCMRCIQVCDKIQGMHIWDVSGTGARTTVGVS 178

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
              DI    C  CG C   CP  A+ E  +
Sbjct: 179 ENRDIKTADCALCGQCITHCPTGALRERDD 208


>gi|158340815|ref|YP_001521983.1| nitroreductase family protein, putative [Acaryochloris marina
           MBIC11017]
 gi|158311056|gb|ABW32669.1| nitroreductase family protein, putative [Acaryochloris marina
           MBIC11017]
          Length = 290

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 23/65 (35%), Gaps = 9/65 (13%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               ERC  C  C  ICP        G   H          +D  +CI CG C   CP +
Sbjct: 5   QIDAERCQKCGKCVQICPTIFAQHTKGAIPHL---------LDTTRCIECGHCVAICPSE 55

Query: 117 AIVEG 121
           AI   
Sbjct: 56  AISHS 60



 Score = 35.8 bits (81), Expect = 1.7,   Method: Composition-based stats.
 Identities = 8/30 (26%), Positives = 10/30 (33%)

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                ID  +C  CG C + CP        
Sbjct: 1   MATIQIDAERCQKCGKCVQICPTIFAQHTK 30


>gi|153811674|ref|ZP_01964342.1| hypothetical protein RUMOBE_02066 [Ruminococcus obeum ATCC 29174]
 gi|149832415|gb|EDM87500.1| hypothetical protein RUMOBE_02066 [Ruminococcus obeum ATCC 29174]
          Length = 281

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 15/66 (22%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           Y    E+C+ C  C   C  +   ++               + +  +CI CG C++ACP 
Sbjct: 227 YRVDMEKCVHCGKCAKACQMEVNPVD---------------NPNSAECIRCGRCKKACPT 271

Query: 116 DAIVEG 121
            AI  G
Sbjct: 272 QAIQCG 277


>gi|153812235|ref|ZP_01964903.1| hypothetical protein RUMOBE_02634 [Ruminococcus obeum ATCC 29174]
 gi|149831642|gb|EDM86729.1| hypothetical protein RUMOBE_02634 [Ruminococcus obeum ATCC 29174]
          Length = 311

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 22/63 (34%), Gaps = 6/63 (9%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               ERCI C +C   CP                 R      D  KCI C  CQE CP  
Sbjct: 253 YIEPERCIRCGICVKSCPV------PDKAVDFRKGRENPPVYDYKKCIRCFCCQEMCPEK 306

Query: 117 AIV 119
           AI 
Sbjct: 307 AIQ 309



 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 15/24 (62%)

Query: 93  TVRYDIDMIKCIYCGLCQEACPVD 116
             +  I+  +CI CG+C ++CPV 
Sbjct: 249 QKKPYIEPERCIRCGICVKSCPVP 272


>gi|150403061|ref|YP_001330355.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta [Methanococcus
           maripaludis C7]
 gi|150034091|gb|ABR66204.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Methanococcus maripaludis C7]
          Length = 375

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 7/102 (6%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG------PRCHDGTR 91
           F+K     ++        Y +   +C  C+    IC  +   +                 
Sbjct: 258 FQKEHLDEKYPSNEKWNEYWSRCIKCYGCRDVCPICFCKECALGEDYLDKGTIPPDPVMF 317

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
           + +R       CI CG C++ CPV+ I     +  A +  QE
Sbjct: 318 QGIRLSHMSFSCINCGQCEDVCPVE-IPLSKIYHRAQQRIQE 358


>gi|150402527|ref|YP_001329821.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C7]
 gi|150033557|gb|ABR65670.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           maripaludis C7]
          Length = 132

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 10/67 (14%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           +     +E+CI C  C   CP  A+++++  +            +D  +CI C  C + C
Sbjct: 73  KMIQKDDEKCIDCGACVVHCPVGALSVDNEFKIL----------LDEEECIGCKNCAKIC 122

Query: 114 PVDAIVE 120
           PV+AI  
Sbjct: 123 PVNAIKI 129



 Score = 35.1 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 12/24 (50%)

Query: 101 IKCIYCGLCQEACPVDAIVEGPNF 124
            KCI CG C   CPV A+     F
Sbjct: 80  EKCIDCGACVVHCPVGALSVDNEF 103


>gi|88603224|ref|YP_503402.1| nitrite and sulfite reductase 4Fe-4S region [Methanospirillum
           hungatei JF-1]
 gi|88188686|gb|ABD41683.1| nitrite and sulphite reductase 4Fe-4S region [Methanospirillum
           hungatei JF-1]
          Length = 291

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 11/74 (14%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G   + R       C  C  C   C  +AI+I++G              ++   C++CG+
Sbjct: 149 GITGVVRPYRVPGTCTGCGTCVQYCKEKAISIKNGQ-----------IQMNDDLCVHCGM 197

Query: 109 CQEACPVDAIVEGP 122
           C ++CP   I   P
Sbjct: 198 CIQSCPFHIIKAEP 211


>gi|56476886|ref|YP_158475.1| electron transport complex protein RnfB [Aromatoleum aromaticum
           EbN1]
 gi|56312929|emb|CAI07574.1| Electron transport complex protein RnfB [Aromatoleum aromaticum
           EbN1]
          Length = 176

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 10/60 (16%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C  C  +CP  AI                 +++    C  CG C E CP +A+   P
Sbjct: 110 CIGCTRCIKVCPTDAILGGPKQ----------IHNVLRDACTGCGSCIERCPTEAMAMQP 159



 Score = 37.4 bits (85), Expect = 0.74,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 14/25 (56%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           I    CI C  C + CP DAI+ GP
Sbjct: 105 IREEICIGCTRCIKVCPTDAILGGP 129


>gi|312880741|ref|ZP_07740541.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Aminomonas
           paucivorans DSM 12260]
 gi|310784032|gb|EFQ24430.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Aminomonas
           paucivorans DSM 12260]
          Length = 267

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 11/75 (14%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
            +    +   +    +RC+ C  C  +CPA  I  + G              +   +C+ 
Sbjct: 181 NWMAHSSFSEFSADPDRCVRCGRCARLCPAGNIAWQEGLLP-----------VWQDRCVV 229

Query: 106 CGLCQEACPVDAIVE 120
           C  C   CP DA+  
Sbjct: 230 CQRCAAVCPHDAVRL 244



 Score = 33.5 bits (75), Expect = 9.3,   Method: Composition-based stats.
 Identities = 9/36 (25%), Positives = 13/36 (36%)

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           +  D  +C+ CG C   CP   I          + R
Sbjct: 191 FSADPDRCVRCGRCARLCPAGNIAWQEGLLPVWQDR 226


>gi|310779995|ref|YP_003968327.1| sulfite reductase, subunit C [Ilyobacter polytropus DSM 2926]
 gi|309749318|gb|ADO83979.1| sulfite reductase, subunit C [Ilyobacter polytropus DSM 2926]
          Length = 324

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 28/83 (33%), Gaps = 8/83 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +         G   +        RCI+C  CE  C +      S         + VR
Sbjct: 147 CPNDCQKIRMHDFGIIGMTLPKLEPHRCISCGRCEKKCKS-----LSTGAIKMNNYKPVR 201

Query: 96  YDIDMIKCIYCGLCQEACPVDAI 118
              +  +CI CG C   CPV A 
Sbjct: 202 ---EHDRCIGCGECVLNCPVSAW 221


>gi|309775696|ref|ZP_07670694.1| CoB--CoM heterodisulfide reductase 1 iron-sulfur subunit A
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308916535|gb|EFP62277.1| CoB--CoM heterodisulfide reductase 1 iron-sulfur subunit A
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 57

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 10/60 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + CI C  C  +CP  A+++    +             D   CI CG C  ACPV AI
Sbjct: 6   DVDTCIGCGACVGVCPVGALSMNDEGKSVC----------DEGTCIDCGSCVSACPVSAI 55



 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 10/23 (43%)

Query: 101 IKCIYCGLCQEACPVDAIVEGPN 123
             CI CG C   CPV A+     
Sbjct: 8   DTCIGCGACVGVCPVGALSMNDE 30


>gi|307544487|ref|YP_003896966.1| formate dehydrogenase subunit alpha [Halomonas elongata DSM 2581]
 gi|307216511|emb|CBV41781.1| formate dehydrogenase, alpha subunit [Halomonas elongata DSM 2581]
          Length = 960

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T      G             D    +C+ CG C +
Sbjct: 165 YFSFDPSKCIVCSRCVRACEEVQGTFALTIDGRGFDSKVSPGQMEDFMDSECVSCGACVQ 224

Query: 112 ACPVDAIVE 120
           ACP   ++E
Sbjct: 225 ACPTATLME 233


>gi|298675109|ref|YP_003726859.1| nitrite and sulphite reductase [Methanohalobium evestigatum Z-7303]
 gi|298288097|gb|ADI74063.1| nitrite and sulphite reductase 4Fe-4S region [Methanohalobium
           evestigatum Z-7303]
          Length = 644

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 11/66 (16%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G     R    EE+C  C  C  +C   AI+I +G              ID   CI CG 
Sbjct: 505 GIVGQMRPKIDEEKCTGCGRCSELCKLNAISIVAGKAV-----------IDRDLCINCGW 553

Query: 109 CQEACP 114
           C   CP
Sbjct: 554 CVRGCP 559



 Score = 34.3 bits (77), Expect = 5.4,   Method: Composition-based stats.
 Identities = 13/41 (31%), Positives = 17/41 (41%)

Query: 78  ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +         G    +R  ID  KC  CG C E C ++AI
Sbjct: 494 NSCVRAESNDIGIVGQMRPKIDEEKCTGCGRCSELCKLNAI 534


>gi|255525572|ref|ZP_05392507.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Clostridium carboxidivorans P7]
 gi|255510756|gb|EET87061.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Clostridium carboxidivorans P7]
          Length = 383

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 12/75 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           G ++C +C  C   C   AI I+             + +I   KC+ CGLC + CPV + 
Sbjct: 19  GLKKCTSCFGCVNACKFNAIEIKISEEGFY------KPEIIEDKCVNCGLCSKNCPVIS- 71

Query: 119 VEGPNFEFATETRQE 133
                FE    T++E
Sbjct: 72  -----FESNNFTKEE 81


>gi|163814915|ref|ZP_02206303.1| hypothetical protein COPEUT_01066 [Coprococcus eutactus ATCC 27759]
 gi|158449854|gb|EDP26849.1| hypothetical protein COPEUT_01066 [Coprococcus eutactus ATCC 27759]
          Length = 597

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 11/58 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           E+CI CK C       AI ++ G              ID   C  CGLC + CPV AI
Sbjct: 545 EKCIQCKKCIREIGCPAIILKDGKVA-----------IDESLCTGCGLCAQICPVGAI 591


>gi|126180361|ref|YP_001048326.1| nitrite and sulphite reductase 4Fe-4S region [Methanoculleus
           marisnigri JR1]
 gi|125863155|gb|ABN58344.1| nitrite and sulphite reductase 4Fe-4S region [Methanoculleus
           marisnigri JR1]
          Length = 283

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 11/65 (16%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           RR+P   + C  C  CE +C   A+ +  G                   CI CG C   C
Sbjct: 153 RRFPLFADECEGCGACEKVCREGAVRVTDGKVL-----------FSEEACIGCGDCITIC 201

Query: 114 PVDAI 118
           P +AI
Sbjct: 202 PGEAI 206


>gi|157831039|pdb|1FCA|A Chain A, Structure Of The Ferredoxin From Clostridium Acidurici:
           Model At 1.8 Angstroms Resolution
          Length = 55

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 26/58 (44%), Gaps = 11/58 (18%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
            E CI+C  CE  CP  AI+               RY ID   CI CG C   CPVDA
Sbjct: 5   NEACISCGACEPECPVDAISQGG-----------SRYVIDADTCIDCGACAGVCPVDA 51


>gi|82540299|ref|XP_724478.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL]
 gi|23479131|gb|EAA16043.1| 68 kDa protein [Plasmodium yoelii yoelii]
          Length = 663

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 1/70 (1%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           LR      ++C   K C   C      +++G  C +    +    I  + CI CG+C + 
Sbjct: 20  LRIAIVSTDKCKP-KKCHLECKKNCPIVKTGKFCIEVEHSSKIAFISEMLCIGCGICVKK 78

Query: 113 CPVDAIVEGP 122
           CP  +I    
Sbjct: 79  CPFSSITIIN 88


>gi|325288561|ref|YP_004264742.1| methyl-accepting chemotaxis sensory transducer [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324963962|gb|ADY54741.1| methyl-accepting chemotaxis sensory transducer [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 639

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 22/69 (31%), Gaps = 6/69 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              EE+C  C  C   CP  A    +        +           CI CG C E C  +
Sbjct: 10  NTHEEKCQGCNKCIRHCPVDANVAYADEEGKIKVKVQA------ELCINCGECIEVCDHE 63

Query: 117 AIVEGPNFE 125
           A     + E
Sbjct: 64  AREFYDDTE 72


>gi|317056952|ref|YP_004105419.1| hypothetical protein Rumal_2302 [Ruminococcus albus 7]
 gi|315449221|gb|ADU22785.1| hypothetical protein Rumal_2302 [Ruminococcus albus 7]
          Length = 205

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 30/84 (35%), Gaps = 14/84 (16%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
             P E+   S  F G  +        + CI C  C + CP   I +              
Sbjct: 133 KKPIERD--SFTFGGVESKASGYFVNDDCIGCGSCLSACPQSCIELNGKAV--------- 181

Query: 95  RYDIDMIKCIYCGLCQEACPVDAI 118
              I    C++CG C E CPV A+
Sbjct: 182 ---IRQENCLHCGNCAEVCPVGAV 202


>gi|300853893|ref|YP_003778877.1| NADH dehydrogenase-like protein [Clostridium ljungdahlii DSM 13528]
 gi|300434008|gb|ADK13775.1| NADH dehydrogenase related protein [Clostridium ljungdahlii DSM
           13528]
          Length = 251

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 22/67 (32%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
             R   + E+ C+ C LC   C        S             Y     +CI C  C  
Sbjct: 115 VKRFKLDPEQNCVLCGLCAKACKELGTGAISTVNRGMYKEVATPYHESSPECIGCASCAN 174

Query: 112 ACPVDAI 118
            CP +AI
Sbjct: 175 VCPTNAI 181


>gi|153955192|ref|YP_001395957.1| hypothetical protein CKL_2574 [Clostridium kluyveri DSM 555]
 gi|219855624|ref|YP_002472746.1| hypothetical protein CKR_2281 [Clostridium kluyveri NBRC 12016]
 gi|146348050|gb|EDK34586.1| Conserved hypothetical protein containing a ferredoxin domain
           [Clostridium kluyveri DSM 555]
 gi|219569348|dbj|BAH07332.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 245

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 30/86 (34%), Gaps = 11/86 (12%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           PF K              R  + + +CI C  C A+CP   I +E G             
Sbjct: 159 PFLKSFVIAPIFRLSRSDRKFHADSKCIGCGKCAAVCPVSDIRMEKGRPAWQHK------ 212

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGP 122
                KC+ C  C   CPV AI  G 
Sbjct: 213 -----KCMQCCACINRCPVKAIQYGN 233


>gi|78185918|ref|YP_373961.1| Fe-S-cluster-containing hydrogenase components 1-like [Chlorobium
           luteolum DSM 273]
 gi|78165820|gb|ABB22918.1| Fe-S-cluster-containing hydrogenase components 1-like protein
           [Chlorobium luteolum DSM 273]
          Length = 523

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 16/85 (18%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           EKG+     R    LR     E  C+       ICP +A+           +R       
Sbjct: 41  EKGTFPDTRRYFTVLRCNHCEEPPCV------DICPVEALHKRPDGIVDFDSR------- 87

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPN 123
              +CI C  C +ACP +++   P 
Sbjct: 88  ---RCIGCKACAQACPYNSVYIDPE 109



 Score = 42.0 bits (97), Expect = 0.027,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 7/75 (9%)

Query: 56  YPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTRRTVRYDIDMIKCIYCGL-- 108
           +     +CI C  C   C ++                 GT    R    +++C +C    
Sbjct: 5   FVIDARKCIGCHACSVACKSENQVPLGVNRTWVKYVEKGTFPDTRRYFTVLRCNHCEEPP 64

Query: 109 CQEACPVDAIVEGPN 123
           C + CPV+A+ + P+
Sbjct: 65  CVDICPVEALHKRPD 79



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 4/64 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              RCI CK C   CP  ++ I+   +               +K      C   CP  AI
Sbjct: 85  DSRRCIGCKACAQACPYNSVYIDPETQTTAKCSYCSHRVEIGLK----PACTVICPQQAI 140

Query: 119 VEGP 122
           + G 
Sbjct: 141 ISGD 144


>gi|39996341|ref|NP_952292.1| glutamate synthase-related protein [Geobacter sulfurreducens PCA]
 gi|39983221|gb|AAR34615.1| glutamate synthase-related protein [Geobacter sulfurreducens PCA]
 gi|298505350|gb|ADI84073.1| glutamate synthase, FMN-Fe(II)-binding domain protein [Geobacter
           sulfurreducens KN400]
          Length = 509

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 22/72 (30%), Gaps = 11/72 (15%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           +CI CK+C   C  +  +                       CI C  C   CP  AI   
Sbjct: 21  KCIRCKVCIRQCAYEVHSYAEAIDTLTEDH---------TLCIGCRRCSALCPTGAITIR 71

Query: 122 PNFEFATETRQE 133
            N E     R E
Sbjct: 72  SNEE--VFKRNE 81


>gi|325278932|ref|YP_004251474.1| NADH dehydrogenase (quinone) [Odoribacter splanchnicus DSM 20712]
 gi|324310741|gb|ADY31294.1| NADH dehydrogenase (quinone) [Odoribacter splanchnicus DSM 20712]
          Length = 596

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 15/96 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            L +F+      +    K           AL  +    + C+ C LC   CP  AI    
Sbjct: 513 TLEHFYDEYV-AHIRDHKCPAGKC----KALLSFRIDPQLCVGCTLCSRNCPVDAI---- 563

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                 G R+   + ID  KCI CG C++ C  +AI
Sbjct: 564 -----IGERKEAHF-IDTTKCIKCGTCKDKCKFNAI 593


>gi|303242027|ref|ZP_07328519.1| Cobyrinic acid ac-diamide synthase [Acetivibrio cellulolyticus CD2]
 gi|302590445|gb|EFL60201.1| Cobyrinic acid ac-diamide synthase [Acetivibrio cellulolyticus CD2]
          Length = 276

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 21/62 (33%), Gaps = 11/62 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              +C  C  C   C   AI +  G              I    C +CG C   CP DAI
Sbjct: 62  DISKCNECGNCARACQFNAIAVVKGKVL-----------IFPQICHHCGACVLTCPNDAI 110

Query: 119 VE 120
            E
Sbjct: 111 NE 112


>gi|301310562|ref|ZP_07216501.1| putative 4Fe-4S binding domain protein [Bacteroides sp. 20_3]
 gi|300832136|gb|EFK62767.1| putative 4Fe-4S binding domain protein [Bacteroides sp. 20_3]
          Length = 301

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 11/62 (17%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            ++CI C  C  +CP  A+T+       +              C  CG C E CP  A+ 
Sbjct: 49  RKKCIGCGACVDVCPTGALTLTEAGIVTN-----------RSLCRTCGRCAEVCPTLAME 97

Query: 120 EG 121
             
Sbjct: 98  MS 99


>gi|289578043|ref|YP_003476670.1| hydrogenase, Fe-only [Thermoanaerobacter italicus Ab9]
 gi|289527756|gb|ADD02108.1| hydrogenase, Fe-only [Thermoanaerobacter italicus Ab9]
          Length = 581

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 59  GEERCIACKLCEAIC-PAQAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPV 115
              +C+ C+ C ++C   Q +           T     +   +    CI CG C E CPV
Sbjct: 144 DPNKCVLCRRCVSVCSEVQNVFAIGMVNRGFKTMVAPSFGRSLKDSPCISCGQCIEVCPV 203

Query: 116 DAIVEGP 122
            AI E  
Sbjct: 204 GAIYEKD 210


>gi|240948590|ref|ZP_04752963.1| electron transport complex protein RnfC [Actinobacillus minor
           NM305]
 gi|240297098|gb|EER47669.1| electron transport complex protein RnfC [Actinobacillus minor
           NM305]
          Length = 793

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 34/105 (32%), Gaps = 3/105 (2%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E  CI C  C   CP   +  +               +  +  CI CG+C   CP  
Sbjct: 379 PEDERACIRCSSCSDACPVG-LLPQQLYWFARSEDHEKSKEYHLDACIECGVCAYVCP-S 436

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVR-NIVTDS 160
            I     F        E+    ++      R+E+   R N   ++
Sbjct: 437 YIPLIQYFRQEKAKIAEIDEKAKKAEEAKQRFEAREARLNKEKEA 481


>gi|229162093|ref|ZP_04290066.1| Dihydroorotate dehydrogenase 1 [Bacillus cereus R309803]
 gi|228621415|gb|EEK78268.1| Dihydroorotate dehydrogenase 1 [Bacillus cereus R309803]
          Length = 416

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 4/63 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117
            ++ CI C  C   C   +          +G++           C+ C LC   CPVD A
Sbjct: 338 NDDVCIKCNKCYISCEDTSHQCIEIFTNDNGSKFLKV---REEDCVGCNLCSIVCPVDGA 394

Query: 118 IVE 120
           I  
Sbjct: 395 IDM 397


>gi|255655479|ref|ZP_05400888.1| putative iron-sulfur protein [Clostridium difficile QCD-23m63]
 gi|296451471|ref|ZP_06893208.1| probable iron-sulfur protein [Clostridium difficile NAP08]
 gi|296880180|ref|ZP_06904146.1| probable iron-sulfur protein [Clostridium difficile NAP07]
 gi|296259738|gb|EFH06596.1| probable iron-sulfur protein [Clostridium difficile NAP08]
 gi|296428769|gb|EFH14650.1| probable iron-sulfur protein [Clostridium difficile NAP07]
          Length = 424

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 7/69 (10%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               E C+ C  C A CP  AI+                  ID  +C+ CG+C   C  +
Sbjct: 289 NINHESCVKCGKCIAACPIDAISKVKEDGKEY-------IKIDEDRCLGCGVCVRNCHKN 341

Query: 117 AIVEGPNFE 125
           +I+     E
Sbjct: 342 SIMLLKRDE 350


>gi|210611379|ref|ZP_03288890.1| hypothetical protein CLONEX_01080 [Clostridium nexile DSM 1787]
 gi|210152000|gb|EEA83007.1| hypothetical protein CLONEX_01080 [Clostridium nexile DSM 1787]
          Length = 296

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 15/69 (21%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           + RY   +++CI C  C+ +C      +E               + + ++CI CG C+ A
Sbjct: 240 IFRYRLDKDKCINCGKCKKVCQMNIDPVE---------------NCNHLECIRCGRCKNA 284

Query: 113 CPVDAIVEG 121
           CPVDAI  G
Sbjct: 285 CPVDAISYG 293


>gi|167766487|ref|ZP_02438540.1| hypothetical protein CLOSS21_00993 [Clostridium sp. SS2/1]
 gi|317499518|ref|ZP_07957782.1| 4Fe-4S binding domain-containing protein [Lachnospiraceae bacterium
           5_1_63FAA]
 gi|167711896|gb|EDS22475.1| hypothetical protein CLOSS21_00993 [Clostridium sp. SS2/1]
 gi|316893172|gb|EFV15390.1| 4Fe-4S binding domain-containing protein [Lachnospiraceae bacterium
           5_1_63FAA]
          Length = 296

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 15/69 (21%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           + RY   +++CI C  C+ +C      +E               + + ++CI CG C+ A
Sbjct: 240 IFRYRLDKDKCINCGKCKKVCQMNIDPVE---------------NCNHLECIRCGRCKNA 284

Query: 113 CPVDAIVEG 121
           CPVDAI  G
Sbjct: 285 CPVDAISYG 293


>gi|166032054|ref|ZP_02234883.1| hypothetical protein DORFOR_01756 [Dorea formicigenerans ATCC
           27755]
 gi|166027777|gb|EDR46534.1| hypothetical protein DORFOR_01756 [Dorea formicigenerans ATCC
           27755]
          Length = 582

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 28/85 (32%), Gaps = 9/85 (10%)

Query: 59  GEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
              +CI C  C  +C       AI           +    +  I    C+ CG C+  CP
Sbjct: 153 DPNKCILCGDCVRMCDNVQGVNAIDFAYRGTEAIVSPAFNKP-IAQTDCVNCGQCRVVCP 211

Query: 115 VDAIVEGPNFEFATETRQELYYDKE 139
             AI    N +       +   DK+
Sbjct: 212 TGAISIKTNIDVVW----DALADKD 232


>gi|254976963|ref|ZP_05273435.1| putative iron-sulfur-binding membrane protein [Clostridium
           difficile QCD-66c26]
 gi|255651882|ref|ZP_05398784.1| putative iron-sulfur-binding membrane protein [Clostridium
           difficile QCD-37x79]
 gi|306520359|ref|ZP_07406706.1| putative iron-sulfur-binding membrane protein [Clostridium
           difficile QCD-32g58]
          Length = 296

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 15/69 (21%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           + RY   +++CI C  C+ +C      +E               + + ++CI CG C+ A
Sbjct: 240 IFRYRLDKDKCINCGKCKKVCQMNIDPVE---------------NCNHLECIRCGRCKNA 284

Query: 113 CPVDAIVEG 121
           CPVDAI  G
Sbjct: 285 CPVDAISYG 293


>gi|62871418|gb|AAY18593.1| putative dihydropyrimidinase dehydrogenase [Bacillus sp. TS-23]
          Length = 349

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 19/63 (30%), Gaps = 4/63 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117
             + CI C  C   C   +           G             C+ C LC   CPVD A
Sbjct: 260 NTDVCINCNKCYIACEDASHQCIDRRADATGREYLKV---REEDCVGCNLCSLVCPVDGA 316

Query: 118 IVE 120
           I  
Sbjct: 317 IDM 319


>gi|78046995|ref|YP_363170.1| ferredoxin [Xanthomonas campestris pv. vesicatoria str. 85-10]
 gi|78035425|emb|CAJ23070.1| putative ferredoxin [Xanthomonas campestris pv. vesicatoria str.
           85-10]
          Length = 156

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 31/85 (36%), Gaps = 11/85 (12%)

Query: 39  EKGSTSPRFRGEHAL-RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
                  R RG H L +     E  CI C  C   CP  AI          G  + +   
Sbjct: 80  VPARPYDRSRGAHKLPQVAWIVEADCIGCTKCIQACPVDAIV---------GGAKHMHTV 130

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           I  + C  C LC  ACPVD I   P
Sbjct: 131 IAPL-CTGCELCLPACPVDCIELHP 154


>gi|313900506|ref|ZP_07833999.1| putative ferredoxin hydrogenase [Clostridium sp. HGF2]
 gi|312954568|gb|EFR36243.1| putative ferredoxin hydrogenase [Clostridium sp. HGF2]
          Length = 577

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 6/95 (6%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVR 95
           P+EK      +     L R  N   +CI C  C  IC   Q + +         T   V 
Sbjct: 122 PYEKKVMYTPWNQSFPLIRESN---KCIKCMRCIQICDKVQNLQVWDVQNTGSRTTVNVS 178

Query: 96  YD--IDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
            +  I+  +C  CG C   CPV+A+    + E A 
Sbjct: 179 LNRSIEEAECSLCGQCITHCPVNALHVREDSERAF 213


>gi|292656847|ref|YP_003536744.1| ferredoxin [Haloferax volcanii DS2]
 gi|291371411|gb|ADE03638.1| ferredoxin (3Fe-4S)(4Fe-4S) [Haloferax volcanii DS2]
          Length = 109

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 28/82 (34%), Gaps = 2/82 (2%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100
           G   P  +            + C+A   C   CP    T    P   +   +        
Sbjct: 24  GPVDPPEKHGIHGTHVAVDFDICLADGACLEDCPVDVFTWVDTPGHPESDIKAEPT--HE 81

Query: 101 IKCIYCGLCQEACPVDAIVEGP 122
            +CI C LC + CPVDAI   P
Sbjct: 82  DQCIDCMLCVDVCPVDAIDVDP 103


>gi|283853033|ref|ZP_06370290.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. FW1012B]
 gi|283571570|gb|EFC19573.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           sp. FW1012B]
          Length = 652

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 7/64 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +RC+ C  C   CP +AI            R   + ++    C  CGLC   CP  AI
Sbjct: 580 DIKRCVGCGKCIITCPFKAIK-------EVEFRGQKKAEVIETVCQGCGLCTSTCPQGAI 632

Query: 119 VEGP 122
               
Sbjct: 633 QLSH 636



 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 27/87 (31%), Gaps = 13/87 (14%)

Query: 57  PNGEERCIACKLCEAICPA----QAITIESGP----RCHDGTRRTVRYDIDMIKCI---- 104
               E C  C  C   CP+     A   + GP              +  ID   C     
Sbjct: 236 YVDWELCTGCGACTEKCPSKKNPDAFNEKIGPTTSINIPFPQAIPKKAVIDPTTCRQFVK 295

Query: 105 -YCGLCQEACPVDAIVEGPNFEFATET 130
             CG+C + CP  AI      E  TE 
Sbjct: 296 GKCGVCAKVCPTGAIRYDMTDELVTED 322



 Score = 35.5 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 3/34 (8%)

Query: 102 KCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
           +C+ CG C   CP  AI      EF  + + E+ 
Sbjct: 583 RCVGCGKCIITCPFKAI---KEVEFRGQKKAEVI 613


>gi|218133340|ref|ZP_03462144.1| hypothetical protein BACPEC_01205 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992213|gb|EEC58217.1| hypothetical protein BACPEC_01205 [Bacteroides pectinophilus ATCC
           43243]
          Length = 293

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 35/106 (33%), Gaps = 12/106 (11%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
               G           ++CI C +CE  C  QAIT                  +D  KC 
Sbjct: 153 ENDIGIKGGMEVNWVSDKCINCGVCEKACREQAITFTGSEII-----------LDKSKCN 201

Query: 105 YCGLCQEACPVDAIVEGPNFEFATETR-QELYYDKERLLNNGDRWE 149
            CG C +ACP DA      F  +         Y  E+LL      E
Sbjct: 202 NCGRCAKACPTDAWDTESGFIVSFGGLFGNRIYKGEQLLPMIKDEE 247



 Score = 33.5 bits (75), Expect = 8.9,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 17/44 (38%)

Query: 78  ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
                      G +  +  +    KCI CG+C++AC   AI   
Sbjct: 146 NNCLKAEENDIGIKGGMEVNWVSDKCINCGVCEKACREQAITFT 189


>gi|206901910|ref|YP_002251792.1| ketoisovalerate oxidoreductase subunit VorD [Dictyoglomus
           thermophilum H-6-12]
 gi|206741013|gb|ACI20071.1| ketoisovalerate oxidoreductase subunit VorD [Dictyoglomus
           thermophilum H-6-12]
          Length = 92

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 29/88 (32%), Gaps = 12/88 (13%)

Query: 37  PFEKGSTSPRFR-GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
           P     TS  ++ G+    R      +C  C  C   CP  A+  +              
Sbjct: 14  PIVPAQTSKEYKTGDWRTFRPEIDYSKCTTCLFCWLFCPDSAVKFDGQKVY--------- 64

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPN 123
             ID   C  CG+C   CPV AI     
Sbjct: 65  --IDYDYCKGCGVCAAECPVKAITMKEE 90


>gi|168185724|ref|ZP_02620359.1| electron transfer flavoprotein subunit alpha [Clostridium botulinum
           C str. Eklund]
 gi|169296383|gb|EDS78516.1| electron transfer flavoprotein subunit alpha [Clostridium botulinum
           C str. Eklund]
          Length = 396

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 12/63 (19%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ++C+ CK+C   CP  AI IE+               +    C  CG C   C  +AI  
Sbjct: 9   DKCVGCKMCANTCPFGAIEIENKKA------------VIKDNCTLCGSCVSVCKFNAIEL 56

Query: 121 GPN 123
             +
Sbjct: 57  KKD 59



 Score = 34.7 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 9/26 (34%), Positives = 11/26 (42%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGP 122
            I   KC+ C +C   CP  AI    
Sbjct: 5   TILKDKCVGCKMCANTCPFGAIEIEN 30


>gi|167629057|ref|YP_001679556.1| proton-translocating NADH-ubiquinone oxidoreductase 75 kd, chain g
           [Heliobacterium modesticaldum Ice1]
 gi|167591797|gb|ABZ83545.1| proton-translocating NADH-ubiquinone oxidoreductase 75 kd, chain g
           [Heliobacterium modesticaldum Ice1]
          Length = 630

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 57  PNGEERCIACKLCEAIC-PAQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEAC 113
            +   +C+ C+ CE+IC   Q   + +       T     ++ DM    CI CG C  AC
Sbjct: 177 RHDLNKCVHCRRCESICAKVQENHVIAAQERGFDTIIAPAFNADMGDVACIMCGQCVLAC 236

Query: 114 PVDAIVE 120
           PV A+ E
Sbjct: 237 PVGALTE 243


>gi|197121866|ref|YP_002133817.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
 gi|196171715|gb|ACG72688.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Anaeromyxobacter sp. K]
          Length = 646

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 24/87 (27%), Gaps = 14/87 (16%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK----- 102
           R      +     E+C+ C  C  +CP   + +                           
Sbjct: 547 RCLICHVQTIYDPEKCVLCGRCVDVCPEYCLALVPLEDVDLPDEERRALAAAAEAGGLPL 606

Query: 103 ---------CIYCGLCQEACPVDAIVE 120
                    CI CGLC   CP DA+  
Sbjct: 607 SAMIKDDAPCIRCGLCAIRCPTDAMTM 633



 Score = 39.3 bits (90), Expect = 0.16,   Method: Composition-based stats.
 Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 1/47 (2%)

Query: 77  AITIESGPRCHDGTRRTVRYDID-MIKCIYCGLCQEACPVDAIVEGP 122
           A  ++                I    KC+ CG C + CP   +   P
Sbjct: 535 AFAVDEAIAQGARCLICHVQTIYDPEKCVLCGRCVDVCPEYCLALVP 581


>gi|161529045|ref|YP_001582871.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Nitrosopumilus maritimus SCM1]
 gi|160340346|gb|ABX13433.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Nitrosopumilus maritimus SCM1]
          Length = 100

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 1/69 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+RCI C LC  IC      +        G +R   +     +CI  G C   CP  +I
Sbjct: 10  DEQRCIGCALCVEICTTLGPDVLRVKPVE-GWKRGKAFVFYPERCISDGACIGVCPTKSI 68

Query: 119 VEGPNFEFA 127
                  + 
Sbjct: 69  FWMRPMNYT 77


>gi|123479045|ref|XP_001322682.1| Iron only hydrogenase large subunit, C-terminal domain containing
           protein [Trichomonas vaginalis G3]
 gi|121905533|gb|EAY10459.1| Iron only hydrogenase large subunit, C-terminal domain containing
           protein [Trichomonas vaginalis G3]
          Length = 1102

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 25/78 (32%), Gaps = 9/78 (11%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100
                R R            E C+ C  C  +C         G   + G      + ++ 
Sbjct: 110 PKRPIRGRKAEKTNALSFDPETCVNCGRCVRVC---------GDMQYIGALDEESHSLND 160

Query: 101 IKCIYCGLCQEACPVDAI 118
             CI CG+C   CP D +
Sbjct: 161 NDCIQCGMCTTVCPTDCL 178


>gi|148269859|ref|YP_001244319.1| hydrogenase, Fe-only [Thermotoga petrophila RKU-1]
 gi|147735403|gb|ABQ46743.1| hydrogenase, Fe-only [Thermotoga petrophila RKU-1]
          Length = 582

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 3/65 (4%)

Query: 59  GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDI--DMIKCIYCGLCQEACPV 115
              +C+ C+ C   C   Q + I S       T     +D+      CI CG C   CP 
Sbjct: 144 DLSKCVKCQRCVRTCSELQGMHIYSMVERGHRTYPGTPFDMPVYETDCIGCGQCAAFCPT 203

Query: 116 DAIVE 120
            AIVE
Sbjct: 204 GAIVE 208


>gi|152989151|ref|YP_001347023.1| electron transport complex protein RnfB [Pseudomonas aeruginosa
           PA7]
 gi|166991043|sp|A6V1T8|RNFB_PSEA7 RecName: Full=Electron transport complex protein rnfB
 gi|150964309|gb|ABR86334.1| probable ferredoxin [Pseudomonas aeruginosa PA7]
          Length = 188

 Score = 44.3 bits (103), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 25/70 (35%), Gaps = 10/70 (14%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           R     E  CI C  C   CP  AI   +           + + +   +C  C LC E C
Sbjct: 104 RVAYIREAECIGCTKCIQACPVDAIVGAA----------RLMHTVIADECTGCDLCLEPC 153

Query: 114 PVDAIVEGPN 123
           PVD I     
Sbjct: 154 PVDCIEMREI 163



 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 16/38 (42%)

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           E  P             I   +CI C  C +ACPVDAI
Sbjct: 91  EPEPLDAAEETPPRVAYIREAECIGCTKCIQACPVDAI 128


>gi|304440540|ref|ZP_07400427.1| ferredoxin hydrogenase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304371018|gb|EFM24637.1| ferredoxin hydrogenase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 577

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 32/100 (32%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93
              P+E+      +     L R      +C+ C        +  +    G         T
Sbjct: 119 REIPYEEHLEKQEWNNNFPLIRDSTRCIKCMRCIQVCDKMQSLNVWGLEGTGARTTVNVT 178

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
               I+   C  CG C   CPV A+ E  + E A    ++
Sbjct: 179 GGRKIEDANCSLCGQCITHCPVGALSERDDTEKAWNALED 218


>gi|298375635|ref|ZP_06985592.1| hydrogenase large subunit HymC [Bacteroides sp. 3_1_19]
 gi|298268135|gb|EFI09791.1| hydrogenase large subunit HymC [Bacteroides sp. 3_1_19]
          Length = 596

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 59  GEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
              +CI C+ CE +C       A+T  +       +    R D+    C YCG C   CP
Sbjct: 148 NMNKCIMCRRCETMCNTIQTVGALTAVNRGFNAAVSTAFER-DMAGSTCSYCGQCVSVCP 206

Query: 115 VDAI 118
           V+A+
Sbjct: 207 VNAL 210


>gi|257082641|ref|ZP_05577002.1| NAD-dependent formate dehydrogenase, alpha [Enterococcus faecalis
           E1Sol]
 gi|256990671|gb|EEU77973.1| NAD-dependent formate dehydrogenase, alpha [Enterococcus faecalis
           E1Sol]
          Length = 906

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 3/92 (3%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV 94
           F +G   P  + + +   +    E+CI C+ C  +C  Q        +          + 
Sbjct: 133 FTEGKRMPCHQEDTSNPFFSYDPEKCIMCRRCARVCQLQQGRDVLSIANRGFETKMMPSY 192

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
               D   C  CG C  +CP  A+      E+
Sbjct: 193 GQAFDQSICESCGNCVSSCPTGALTAKDTKEY 224


>gi|253578706|ref|ZP_04855977.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849649|gb|EES77608.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 263

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 32/84 (38%), Gaps = 11/84 (13%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P+E+ +                 E  CI CK CE  CP  AIT+++             
Sbjct: 191 VPYEQTTFVQCSSHAKGKAVTSACEVGCIGCKKCEKTCPNGAITVDN-----------FC 239

Query: 96  YDIDMIKCIYCGLCQEACPVDAIV 119
             ID  KC  CG C+E CP   I 
Sbjct: 240 AHIDYSKCTNCGACKEVCPRHIIQ 263


>gi|225175972|ref|ZP_03729964.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1]
 gi|225168560|gb|EEG77362.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1]
          Length = 618

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 12/73 (16%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             L  Y    E+C AC  C   CP++AIT            +   + ID  KC  CG+C 
Sbjct: 548 KELITYTIDAEKCSACGRCLKACPSEAITG----------AKKTPHAIDAEKCDKCGICF 597

Query: 111 EACP--VDAIVEG 121
             CP    AI   
Sbjct: 598 TECPDRFAAIQIT 610



 Score = 38.2 bits (87), Expect = 0.38,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 19/40 (47%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            I +        +  + Y ID  KC  CG C +ACP +AI
Sbjct: 536 HIRNKECPAKACKELITYTIDAEKCSACGRCLKACPSEAI 575


>gi|221369206|ref|YP_002520302.1| Electron transport complex, RnfABCDGE type, B subunit [Rhodobacter
           sphaeroides KD131]
 gi|221162258|gb|ACM03229.1| Electron transport complex, RnfABCDGE type, B subunit [Rhodobacter
           sphaeroides KD131]
          Length = 188

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 10/58 (17%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C  C  C   CP  AI   +             + +    CI C  C EACP +AI
Sbjct: 111 DHCTGCMRCFKRCPTDAIIGAN----------RQIHTVVTDACIGCNACIEACPTEAI 158


>gi|148910189|gb|ABR18176.1| unknown [Picea sitchensis]
          Length = 605

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 24/56 (42%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           K C   C      +++G  C + +  +    I    CI CG+C + CP +AI    
Sbjct: 19  KKCRQECKKSCPVVKTGKLCIEVSSASKIAFISEELCIGCGICVKKCPFEAIQIIN 74


>gi|253701389|ref|YP_003022578.1| electron transfer flavoprotein subunit alpha [Geobacter sp. M21]
 gi|251776239|gb|ACT18820.1| Electron transfer flavoprotein alpha subunit [Geobacter sp. M21]
          Length = 447

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 38/109 (34%), Gaps = 27/109 (24%)

Query: 62  RCIACK-LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           +CIAC   CE+ CP   I +                 I   KCI C  C + C   A+  
Sbjct: 20  KCIACGARCESSCPVSGIQMSEAGEPS----------ILDGKCIGCAKCVKVCAAGALEM 69

Query: 121 GPNFEFATETRQELYYDKERLLNNG------DRWESEIVRNIVTDSPYR 163
                    T +EL   K+    +G      D  E E+   +   + YR
Sbjct: 70  -------FYTPEELELLKQWEAQHGAVEEELDPAEKELRARL---AQYR 108


>gi|169351249|ref|ZP_02868187.1| hypothetical protein CLOSPI_02028 [Clostridium spiroforme DSM 1552]
 gi|169292311|gb|EDS74444.1| hypothetical protein CLOSPI_02028 [Clostridium spiroforme DSM 1552]
          Length = 582

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 3/68 (4%)

Query: 59  GEERCIACKLC-EAICPAQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115
              +C+ C  C E     Q + I         T+    YD       C+ CG C   CPV
Sbjct: 144 DTSKCVLCGRCVETCIKHQGLGILGFMNRGFKTKVGPVYDKSFADVNCMQCGQCINVCPV 203

Query: 116 DAIVEGPN 123
            A+ E   
Sbjct: 204 GALHEKEE 211


>gi|167762989|ref|ZP_02435116.1| hypothetical protein BACSTE_01354 [Bacteroides stercoris ATCC
           43183]
 gi|167699329|gb|EDS15908.1| hypothetical protein BACSTE_01354 [Bacteroides stercoris ATCC
           43183]
          Length = 373

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 10/53 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           E CI C +C   C   AI + +  +            ID  KC+ CG C   C
Sbjct: 194 ENCIGCNICVKHCAHDAIHLNAERKAE----------IDYTKCVGCGQCVALC 236


>gi|167623860|ref|YP_001674154.1| electron transport complex protein RnfB [Shewanella halifaxensis
           HAW-EB4]
 gi|167353882|gb|ABZ76495.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           halifaxensis HAW-EB4]
          Length = 189

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 22/62 (35%), Gaps = 10/62 (16%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C   CP  AI               + + +    C  C LC   CPVD I  
Sbjct: 112 DECIGCTKCIQACPVDAILGSGK----------LMHTVITDYCTGCDLCVAPCPVDCIDM 161

Query: 121 GP 122
            P
Sbjct: 162 LP 163



 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           I   +CI C  C +ACPVDAI
Sbjct: 109 IREDECIGCTKCIQACPVDAI 129


>gi|157363815|ref|YP_001470582.1| hydrogenase large subunit [Thermotoga lettingae TMO]
 gi|157314419|gb|ABV33518.1| hydrogenase large subunit domain protein [Thermotoga lettingae TMO]
          Length = 653

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 59  GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115
              +CI C  C  +C   Q I +         T+ T  +  ++ K  C+YCG C   CP 
Sbjct: 140 DNSKCILCGDCVRVCEEVQGIGVIDFAYRGFSTQVTPAFSNELAKSECVYCGQCVAHCPT 199

Query: 116 DAIVEGPNFE 125
            A+    + E
Sbjct: 200 AALTFRNDLE 209


>gi|154502657|ref|ZP_02039717.1| hypothetical protein RUMGNA_00470 [Ruminococcus gnavus ATCC 29149]
 gi|210617393|ref|ZP_03291557.1| hypothetical protein CLONEX_03779 [Clostridium nexile DSM 1787]
 gi|153796540|gb|EDN78960.1| hypothetical protein RUMGNA_00470 [Ruminococcus gnavus ATCC 29149]
 gi|210149323|gb|EEA80332.1| hypothetical protein CLONEX_03779 [Clostridium nexile DSM 1787]
          Length = 295

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 37/122 (30%), Gaps = 30/122 (24%)

Query: 18  GAFFLCLRYFFKAKTTI-----------NYPFEKGSTS----PRFRGEHALRRYPNGEER 62
                 L + F  K TI             PF K             + +  +     E+
Sbjct: 180 SGIRAALGHLFTFKFTILALFIILSILFYRPFCKWICPLGAIYSLFNKVSFLKIQVDHEK 239

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+ C+ C  +C      +++                    CI CG C +ACP DAI    
Sbjct: 240 CVGCQKCSRVCKMDVNVVDTPNHPE---------------CIRCGECMKACPTDAICYHY 284

Query: 123 NF 124
            F
Sbjct: 285 GF 286


>gi|149920538|ref|ZP_01909005.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Plesiocystis
           pacifica SIR-1]
 gi|149818582|gb|EDM78028.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Plesiocystis
           pacifica SIR-1]
          Length = 573

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 38/131 (29%), Gaps = 30/131 (22%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCL-RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           R +   V      + V  F +    +          P     T+   R +  +    +  
Sbjct: 34  RTWVKTVEHGAYPDVVRTFQVTRCNHCANPPCVRICP----VTAMYQRDDGIVEFDKD-- 87

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG---------LCQE 111
             CI CK C   CP  AI I+                    KC YC           C  
Sbjct: 88  -ACIGCKACMQACPYDAIHIDPD-------------TGTAAKCHYCAHRVDAGLEPACAV 133

Query: 112 ACPVDAIVEGP 122
            CP +AIV G 
Sbjct: 134 VCPTEAIVAGD 144



 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 17/92 (18%)

Query: 56  YPNGEERCIACKLCEAICPAQA-----ITIESGPRCHDGTRRTVRYDIDMIKCIYCGL-- 108
           +     RCI C  C   C ++      +          G    V     + +C +C    
Sbjct: 5   FVIDNTRCIGCHACSTACKSENEVPLGVNRTWVKTVEHGAYPDVVRTFQVTRCNHCANPP 64

Query: 109 CQEACPVDAIVEGPNFEFATETRQELYYDKER 140
           C   CPV A+            R +   + ++
Sbjct: 65  CVRICPVTAM----------YQRDDGIVEFDK 86



 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 26/86 (30%), Gaps = 12/86 (13%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYD 97
           +        G +          RC  C    C  ICP  A+                   
Sbjct: 34  RTWVKTVEHGAYPDVVRTFQVTRCNHCANPPCVRICPVTAMYQRDDGIVEF--------- 84

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPN 123
            D   CI C  C +ACP DAI   P+
Sbjct: 85  -DKDACIGCKACMQACPYDAIHIDPD 109


>gi|150402418|ref|YP_001329712.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C7]
 gi|150033448|gb|ABR65561.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           maripaludis C7]
          Length = 80

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 8/69 (11%)

Query: 60  EERCIACKLCEAICPAQAITIE--------SGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            ++C  C  C   CP  A   +        S  +        V   ++   C  CG C E
Sbjct: 8   PDKCHGCGNCVVACPVNAQDPDVYGGKGPSSDEKLIMRIENGVVSVVNGDLCGGCGACIE 67

Query: 112 ACPVDAIVE 120
           ACPVDAI  
Sbjct: 68  ACPVDAIKL 76



 Score = 33.9 bits (76), Expect = 7.2,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDA 117
             + ++   KC  CG C  ACPV+A
Sbjct: 1   MYKLEVYPDKCHGCGNCVVACPVNA 25


>gi|126178576|ref|YP_001046541.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanoculleus marisnigri JR1]
 gi|125861370|gb|ABN56559.1| formylmethanofuran dehydrogenase, subunit F [Methanoculleus
           marisnigri JR1]
          Length = 389

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 1/74 (1%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG-TRRTVRYDIDMIKCIYC 106
           R   A+       E C  C +C   CP +AI +        G        D++  KC YC
Sbjct: 21  RLLKAVNNLILNAETCTGCGICVDACPEEAIVLGPVGATRRGAIDYAEPVDVNPEKCSYC 80

Query: 107 GLCQEACPVDAIVE 120
           G+C   CP +A+  
Sbjct: 81  GVCVVMCPFNAMTL 94



 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 3/69 (4%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  C  C +C   CP  AIT+E   R    ++   + DI+   C  C  C ++CP +
Sbjct: 205 QWEETTCDGCTICVEACPQDAITLE---REVISSKLPGKVDIEQDNCCTCTWCVQSCPQE 261

Query: 117 AIVEGPNFE 125
           AI     FE
Sbjct: 262 AITVEKIFE 270



 Score = 42.4 bits (98), Expect = 0.019,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 7/68 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRC-------HDGTRRTVRYDIDMIKCIYCGLCQE 111
             E+C  C +C  +CP  A+T++                   +   ID  KC  C +C+E
Sbjct: 73  NPEKCSYCGVCVVMCPFNAMTLKIDGEERLPILEQEGFPTYDMVTTIDEEKCDRCTICEE 132

Query: 112 ACPVDAIV 119
            CP DAI 
Sbjct: 133 VCPRDAIN 140



 Score = 39.7 bits (91), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 25/80 (31%), Gaps = 5/80 (6%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT-IESGPRCHDGTRRTV 94
            P E  +    F G+  +            C  C  +CP  A+      P          
Sbjct: 258 CPQEAITVEKIFEGDLEIHPEKCPGG----CSTCVEVCPCNALYLPSPLPAKDMKGEIEA 313

Query: 95  RYDIDMIKCIYCGLCQEACP 114
              I+   CI CG C  ACP
Sbjct: 314 NIAINKDFCILCGACVNACP 333



 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 9/86 (10%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---------ESGPRCHD 88
            E+     +             EE+C  C +CE +CP  AI           E+G     
Sbjct: 99  EERLPILEQEGFPTYDMVTTIDEEKCDRCTICEEVCPRDAINRDVPAFEGGDEAGKPRET 158

Query: 89  GTRRTVRYDIDMIKCIYCGLCQEACP 114
             +    + +D  KC  CG+C E CP
Sbjct: 159 ALQTRTTFTVDTEKCDVCGICGELCP 184



 Score = 37.0 bits (84), Expect = 0.99,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 9/63 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY-CGLCQEACPVDA 117
            ++ C  C  C   CP +AIT+E               +I   KC   C  C E CP +A
Sbjct: 244 EQDNCCTCTWCVQSCPQEAITVEKIFEGDL--------EIHPEKCPGGCSTCVEVCPCNA 295

Query: 118 IVE 120
           +  
Sbjct: 296 LYL 298



 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 12/22 (54%), Positives = 15/22 (68%)

Query: 101 IKCIYCGLCQEACPVDAIVEGP 122
             C  CG+C +ACP +AIV GP
Sbjct: 34  ETCTGCGICVDACPEEAIVLGP 55


>gi|121997094|ref|YP_001001881.1| RnfABCDGE type electron transport complex subunit C [Halorhodospira
           halophila SL1]
 gi|121588499|gb|ABM61079.1| electron transport complex, RnfABCDGE type, C subunit
           [Halorhodospira halophila SL1]
          Length = 506

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 25/74 (33%), Gaps = 5/74 (6%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             CI C  C   CP   +  +   R   G          M  C+ CG C   CP  A   
Sbjct: 369 RPCIRCGRCVDACPMGLMPFDIANRAAAGDVDGAAATGLMD-CLTCGSCAYVCP-SARPL 426

Query: 121 GPNFEFATETRQEL 134
              F +A   R +L
Sbjct: 427 VQLFHYA---RGQL 437


>gi|150388476|ref|YP_001318525.1| hydrogenase, Fe-only [Alkaliphilus metalliredigens QYMF]
 gi|149948338|gb|ABR46866.1| hydrogenase, Fe-only [Alkaliphilus metalliredigens QYMF]
          Length = 582

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 3/67 (4%)

Query: 59  GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQEACPV 115
            +++CI C+ CE  C   Q   I S       T     ++  +    C YCG C   CP 
Sbjct: 150 NQDKCILCRRCETACNEIQTCGILSALNRGFDTVVGPAFNLPMVETSCTYCGQCVAVCPT 209

Query: 116 DAIVEGP 122
            A+ E  
Sbjct: 210 AALTEVN 216


>gi|296132457|ref|YP_003639704.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola
           sp. JR]
 gi|296031035|gb|ADG81803.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola
           potens JR]
          Length = 660

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/117 (20%), Positives = 34/117 (29%), Gaps = 15/117 (12%)

Query: 29  KAKTTINYPFEKGSTSPR---FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
               TI    E  S S     F      +       +C  C +CE  CP + I+      
Sbjct: 207 HPNITIMSYSEVESVSGYIGNFDVTIRKKARYVDINKCTGCGICETKCPTKVISEFEQGM 266

Query: 86  CHDGTRRTVRYD-------IDMIKCIY-----CGLCQEACPVDAIVEGPNFEFATET 130
                              ID + C       CG+C + CP  AI      E  ++ 
Sbjct: 267 GTRPCIYKPFPQAVPNKPVIDPVNCKKLKDGKCGVCAKVCPTGAINYEDKDELVSQK 323



 Score = 38.9 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)

Query: 59  GEERCIACKLCEAICPAQAIT-IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
            +E+C+ C LC  +CP +AI+  E   R H         D++   C  CG C   C   A
Sbjct: 581 NQEKCVGCLLCSKVCPYKAISGKEITERVHGQEITRTVADVNSGLCQGCGACVPECRSGA 640

Query: 118 IVE 120
           +  
Sbjct: 641 LNL 643


>gi|289191768|ref|YP_003457709.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
 gi|288938218|gb|ADC68973.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
          Length = 405

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 14/114 (12%)

Query: 9   SFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKL 68
           S  +L EF        + + K                R+R    + ++P    +CI+C+ 
Sbjct: 4   SLWYLYEFAR------KKWIKRFIDAKSDKSSYIPPERYRKIPPIVKFPE---KCISCEA 54

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+  CPA A+ +      +           D   CI C  C E CP   +    
Sbjct: 55  CKESCPAFAVEMVYSEEYNKNLPVF-----DEGSCIACANCVEVCPTGVLEMDK 103



 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 30/90 (33%), Gaps = 9/90 (10%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P            +     Y   E+ CI C++C  +C A AI I    +          
Sbjct: 252 CPTTAIRIYKPIISKRKDICYVIDEDLCIGCRICYKVCGAGAIKISKETKLPY------- 304

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
             I    C+  G C   CPV+AI      E
Sbjct: 305 --IVPELCVRGGACARECPVEAIKIVKPEE 332



 Score = 38.9 bits (89), Expect = 0.21,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDG----TRRTVRYDIDMIKCIYCGLCQEACP 114
            E  CIAC  C  +CP   + ++      +G      +     ID   C+ CG C+ ACP
Sbjct: 80  DEGSCIACANCVEVCPTGVLEMDKHRIETEGLFFDKPKYHNLIIDEEVCVRCGNCERACP 139

Query: 115 VDAI 118
           ++ I
Sbjct: 140 INVI 143



 Score = 38.5 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 11/75 (14%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           +  T   F  +         EE C+ C  CE  CP   I            R+  +Y I+
Sbjct: 105 RIETEGLFFDKPKYHNLIIDEEVCVRCGNCERACPINVIE-----------RKEGKYVIN 153

Query: 100 MIKCIYCGLCQEACP 114
           M  CI C  C +ACP
Sbjct: 154 MALCISCKECVKACP 168


>gi|253998890|ref|YP_003050953.1| formate dehydrogenase subunit alpha [Methylovorus sp. SIP3-4]
 gi|313200989|ref|YP_004039647.1| formate dehydrogenase subunit alpha [Methylovorus sp. MP688]
 gi|253985569|gb|ACT50426.1| formate dehydrogenase, alpha subunit [Methylovorus sp. SIP3-4]
 gi|312440305|gb|ADQ84411.1| formate dehydrogenase, alpha subunit [Methylovorus sp. MP688]
          Length = 948

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 2/68 (2%)

Query: 55  RYPNGEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
            +     +CI C  C   C        +    R  +    +   +    +C+ CG C +A
Sbjct: 157 YFTFDPSKCIVCSRCVRACEETQGTFALTIQGRGFESKVASGVNNFLESECVSCGACVQA 216

Query: 113 CPVDAIVE 120
           CP   ++E
Sbjct: 217 CPTATLME 224


>gi|225016911|ref|ZP_03706103.1| hypothetical protein CLOSTMETH_00824 [Clostridium methylpentosum
           DSM 5476]
 gi|224950305|gb|EEG31514.1| hypothetical protein CLOSTMETH_00824 [Clostridium methylpentosum
           DSM 5476]
          Length = 501

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 9/64 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +RCIAC++CE  C  +  + +           T     D  KC+ C  C   CP  A+
Sbjct: 15  NPQRCIACRVCERQCANEVHSYDPE---------TGTMRADESKCVNCHRCVTLCPTRAL 65

Query: 119 VEGP 122
               
Sbjct: 66  KIVK 69


>gi|160943828|ref|ZP_02091059.1| hypothetical protein FAEPRAM212_01326 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445002|gb|EDP22005.1| hypothetical protein FAEPRAM212_01326 [Faecalibacterium prausnitzii
           M21/2]
 gi|295104052|emb|CBL01596.1| Predicted NADH:ubiquinone oxidoreductase, subunit RnfB
           [Faecalibacterium prausnitzii SL3/3]
          Length = 299

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 26/79 (32%), Gaps = 11/79 (13%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           +         +            CIAC +CE  C   AI +  G              ID
Sbjct: 191 RKPVVMCSNKDKGAVANKLCTTSCIACGMCERTCKFDAIHVVDG-----------VARID 239

Query: 100 MIKCIYCGLCQEACPVDAI 118
             KC  CG+C + CP   I
Sbjct: 240 YDKCKGCGMCAQKCPKHII 258



 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 6/67 (8%)

Query: 59  GEERCIACKLCEAICPAQ------AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
            +++C  C  C  ICP Q      A   +    C +  +  V   +    CI CG+C+  
Sbjct: 164 DKDKCTGCGACANICPKQVIMIDAAGPRKPVVMCSNKDKGAVANKLCTTSCIACGMCERT 223

Query: 113 CPVDAIV 119
           C  DAI 
Sbjct: 224 CKFDAIH 230



 Score = 36.2 bits (82), Expect = 1.3,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 20/58 (34%), Gaps = 11/58 (18%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           CI    C  +C   AI I  G              +D  KC  CG C   CP   I+ 
Sbjct: 139 CIGLGDCTKVCKFDAIHIVDG-----------VAKVDKDKCTGCGACANICPKQVIMI 185


>gi|89895690|ref|YP_519177.1| hypothetical protein DSY2944 [Desulfitobacterium hafniense Y51]
 gi|89335138|dbj|BAE84733.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 367

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 26/60 (43%), Gaps = 12/60 (20%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            EERC AC  C+  CPA AIT+    R            ID   CI CG C   C   AI
Sbjct: 191 NEERCTACGKCKNWCPASAITVAGFAR------------IDEKLCIGCGECAVTCTFKAI 238



 Score = 33.5 bits (75), Expect = 9.3,   Method: Composition-based stats.
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 97  DIDMIKCIYCGLCQEACPVDAI 118
            ++  +C  CG C+  CP  AI
Sbjct: 189 QVNEERCTACGKCKNWCPASAI 210


>gi|328949310|ref|YP_004366647.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Treponema succinifaciens DSM 2489]
 gi|328449634|gb|AEB15350.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Treponema succinifaciens DSM 2489]
          Length = 387

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 38/126 (30%), Gaps = 14/126 (11%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKT--TINYPFEKGSTSPRFRGEHALRRYPN 58
           M      ++ +          + L    K +T  ++  PF   ++         +R    
Sbjct: 218 MTTIPGLIAGIIFIGLFLGLVVVLPILTKRRTQCSMLCPFGAFASLTDKLSPFKMRIDTE 277

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              +C  C  C   C   AI + +  +  +    T         C  CG C   CP  AI
Sbjct: 278 ---KCKGCMKCAQACLFGAIDVATIQQKKNSPEIT---------CAKCGECVAVCPEKAI 325

Query: 119 VEGPNF 124
                F
Sbjct: 326 SYQFRF 331


>gi|325829764|ref|ZP_08163222.1| electron transport complex, RnfABCDGE type, C subunit [Eggerthella
           sp. HGA1]
 gi|325487931|gb|EGC90368.1| electron transport complex, RnfABCDGE type, C subunit [Eggerthella
           sp. HGA1]
          Length = 442

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           CI C  C   CP Q ++  +  + +         D+    C+ CG C   CP
Sbjct: 368 CIRCGRCTNSCPMQ-LSPIAIKKAYTVQDAKKLDDLMADLCMGCGTCSFVCP 418


>gi|320354168|ref|YP_004195507.1| NAD(P)-dependent nickel-iron dehydrogenase diaphorase component
           subunit HoxU [Desulfobulbus propionicus DSM 2032]
 gi|320122670|gb|ADW18216.1| NAD(P)-dependent nickel-iron dehydrogenase diaphorase component
           subunit HoxU [Desulfobulbus propionicus DSM 2032]
          Length = 238

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 20/66 (30%), Gaps = 4/66 (6%)

Query: 59  GEERCIACKLCEAIC--PAQAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLCQEACP 114
              RC+ C  C  +C     A T +   R                   C  CG C   CP
Sbjct: 146 DHNRCVLCTRCVRVCAEIEGAHTWDIKHRGIHSLIVADLDTSWGASETCTGCGKCVHVCP 205

Query: 115 VDAIVE 120
             A+ E
Sbjct: 206 TGALCE 211


>gi|310779383|ref|YP_003967716.1| Cobyrinic acid ac-diamide synthase [Ilyobacter polytropus DSM 2926]
 gi|309748706|gb|ADO83368.1| Cobyrinic acid ac-diamide synthase [Ilyobacter polytropus DSM 2926]
          Length = 285

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 19/61 (31%), Gaps = 11/61 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E+C  C  C   C   AI                   I    C  CG C+  CP +AI
Sbjct: 62  DMEKCNLCGKCGDFCRYNAILPAKDKVL-----------IFKEICHNCGGCEIVCPTNAI 110

Query: 119 V 119
            
Sbjct: 111 Q 111


>gi|303241626|ref|ZP_07328125.1| aldo/keto reductase [Acetivibrio cellulolyticus CD2]
 gi|302590846|gb|EFL60595.1| aldo/keto reductase [Acetivibrio cellulolyticus CD2]
          Length = 315

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 26/82 (31%), Gaps = 12/82 (14%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEER-CIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           F         R   A R+     +  C  C  C  +C   A+ I+               
Sbjct: 242 FNNEPIPESIRSIAAGRKKHLHIDYWCEGCGKCTEMCGQNALYIQDNKA----------- 290

Query: 97  DIDMIKCIYCGLCQEACPVDAI 118
            +   KC+ CG C   CP  AI
Sbjct: 291 KVADEKCLLCGYCASVCPCFAI 312


>gi|325681306|ref|ZP_08160835.1| ferredoxin hydrogenase [Ruminococcus albus 8]
 gi|324106997|gb|EGC01284.1| ferredoxin hydrogenase [Ruminococcus albus 8]
          Length = 580

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 14/108 (12%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC-PAQAITIESGPRCHDGTRRTVR 95
           P E                      +CI C  C A C   Q++++    R          
Sbjct: 127 PEEMNKPIDDSSPFLV-----RDNNKCIQCMRCVAACKNVQSVSVIGNIRRGFNVHVGSA 181

Query: 96  YDIDMIK--CIYCGLCQEACPVDAIVEGPNFEFATETR-QELYYDKER 140
           +D  +    C+ CG C  +CPV A+      E ++E +  +   D E+
Sbjct: 182 FDAPLASTACVGCGQCIVSCPVGALT-----EKSSEKKVWDAIADPEK 224


>gi|292654391|ref|YP_003534288.1| ferredoxin [Haloferax volcanii DS2]
 gi|291370147|gb|ADE02374.1| ferredoxin (3Fe-4S)(4Fe-4S) [Haloferax volcanii DS2]
          Length = 107

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 28/78 (35%), Gaps = 2/78 (2%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100
           G   P  +            + C+A   C   CP    T    P      ++    +   
Sbjct: 24  GPVEPPEKLGIHGTHVAVDYDICLADGACLENCPVDVFTWVDTPDHPVSEKKVEPTN--E 81

Query: 101 IKCIYCGLCQEACPVDAI 118
            +CI C LC + CPVDAI
Sbjct: 82  DQCIDCMLCVDICPVDAI 99


>gi|262406412|ref|ZP_06082961.1| ferredoxin [Bacteroides sp. 2_1_22]
 gi|294643290|ref|ZP_06721116.1| ferredoxin [Bacteroides ovatus SD CC 2a]
 gi|294806484|ref|ZP_06765325.1| ferredoxin [Bacteroides xylanisolvens SD CC 1b]
 gi|262355115|gb|EEZ04206.1| ferredoxin [Bacteroides sp. 2_1_22]
 gi|292641413|gb|EFF59605.1| ferredoxin [Bacteroides ovatus SD CC 2a]
 gi|294446347|gb|EFG14973.1| ferredoxin [Bacteroides xylanisolvens SD CC 1b]
          Length = 317

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 9/65 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C+ C  C A C   AI +                ++D  KC  CG C +ACP   I
Sbjct: 138 CSYGCLGCGDCVAACQFDAIHMNPETGLP---------EVDEAKCTACGACVKACPKAII 188

Query: 119 VEGPN 123
              P 
Sbjct: 189 EIRPQ 193



 Score = 41.2 bits (95), Expect = 0.044,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 26/76 (34%), Gaps = 8/76 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------DMIKCIYCGLCQ 110
            E +C AC  C   CP   I I    +       +               + CI CG C 
Sbjct: 169 DEAKCTACGACVKACPKAIIEIRPQGKKSRRVYVSCVNKDKGAVARKACTVSCIGCGKCV 228

Query: 111 EACPVDAIVEGPNFEF 126
           + CP +AI    N  +
Sbjct: 229 KTCPFEAITLENNLAY 244



 Score = 40.9 bits (94), Expect = 0.061,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 11/62 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI C  C   CP +AIT+E+               ID  KC  C  C E CP ++I
Sbjct: 217 CTVSCIGCGKCVKTCPFEAITLENNLAY-----------IDPHKCKSCRKCVEVCPQNSI 265

Query: 119 VE 120
           +E
Sbjct: 266 IE 267


>gi|255526809|ref|ZP_05393708.1| hydrogenase, Fe-only [Clostridium carboxidivorans P7]
 gi|296186425|ref|ZP_06854828.1| putative ferredoxin hydrogenase [Clostridium carboxidivorans P7]
 gi|255509488|gb|EET85829.1| hydrogenase, Fe-only [Clostridium carboxidivorans P7]
 gi|296048872|gb|EFG88303.1| putative ferredoxin hydrogenase [Clostridium carboxidivorans P7]
          Length = 574

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

Query: 59  GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPV 115
             ++CI C+ CE +C   Q ++  S       T  +  +   +    C +CG C   CP 
Sbjct: 148 DLDKCILCRRCETVCSEIQTVSALSAVSRGFDTIVSPAFGTAMVETNCTFCGQCVAVCPT 207

Query: 116 DAIVEGPN 123
            A+ E  N
Sbjct: 208 GALAEVNN 215


>gi|257790463|ref|YP_003181069.1| electron transport complex, RnfABCDGE type, C subunit [Eggerthella
           lenta DSM 2243]
 gi|317490037|ref|ZP_07948528.1| electron transport complex [Eggerthella sp. 1_3_56FAA]
 gi|257474360|gb|ACV54680.1| electron transport complex, RnfABCDGE type, C subunit [Eggerthella
           lenta DSM 2243]
 gi|316910878|gb|EFV32496.1| electron transport complex [Eggerthella sp. 1_3_56FAA]
          Length = 442

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 1/52 (1%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           CI C  C   CP Q ++  +  + +         D+    C+ CG C   CP
Sbjct: 368 CIRCGRCTNSCPMQ-LSPIAIKKAYTVQDAKKLDDLMADLCMGCGTCSFVCP 418


>gi|227496946|ref|ZP_03927198.1| conserved hypothetical protein [Actinomyces urogenitalis DSM 15434]
 gi|226833554|gb|EEH65937.1| conserved hypothetical protein [Actinomyces urogenitalis DSM 15434]
          Length = 341

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 22/61 (36%), Gaps = 6/61 (9%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             C  C  C   CP  A+ +        G  +       +  C  C  C  ACPVDA+  
Sbjct: 184 SDCTLCAACTWACPHGALEMADADSGLRGLVQD------LAACRGCQACVGACPVDALHA 237

Query: 121 G 121
           G
Sbjct: 238 G 238


>gi|223986391|ref|ZP_03636397.1| hypothetical protein HOLDEFILI_03709 [Holdemania filiformis DSM
           12042]
 gi|223961633|gb|EEF66139.1| hypothetical protein HOLDEFILI_03709 [Holdemania filiformis DSM
           12042]
          Length = 57

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 10/60 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++ CI C  C  +CP  AI ++   +            +D   CI CG C   CPV AI
Sbjct: 6   DKDTCIGCGACAGVCPVGAIALQDDGKAG----------VDEGTCIDCGACVSTCPVSAI 55



 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 11/23 (47%)

Query: 101 IKCIYCGLCQEACPVDAIVEGPN 123
             CI CG C   CPV AI    +
Sbjct: 8   DTCIGCGACAGVCPVGAIALQDD 30


>gi|209519327|ref|ZP_03268126.1| formate dehydrogenase, alpha subunit [Burkholderia sp. H160]
 gi|209500211|gb|EEA00268.1| formate dehydrogenase, alpha subunit [Burkholderia sp. H160]
          Length = 994

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 3/76 (3%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCI 104
           R + +   +     +CI C  C   C     T     +G         +        +C+
Sbjct: 189 RKDESNPYFTYDPSKCIVCNRCVRACEETQGTFALTITGRGFESRVAASENQPFMESECV 248

Query: 105 YCGLCQEACPVDAIVE 120
            CG C  ACP   + E
Sbjct: 249 SCGACVAACPTATLQE 264


>gi|168261433|ref|ZP_02683406.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|205349505|gb|EDZ36136.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 287

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 11/73 (15%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            + C  C  C   CP   I  +                I   +C  CG C   CP  A+ 
Sbjct: 190 PQECRMCGACWRSCPENVIQFDDN-----------TLTIAAARCTGCGGCAAVCPHQALR 238

Query: 120 EGPNFEFATETRQ 132
              + E ++    
Sbjct: 239 LRFDVEPSSTRHS 251



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 11/50 (22%)

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  +CPAQA ++  G              ID  +CI CG C   CPVDAI
Sbjct: 29  CADVCPAQAFSLAQGQVS-----------IDTTRCIACGDCLFVCPVDAI 67


>gi|163856036|ref|YP_001630334.1| ferredoxin [Bordetella petrii DSM 12804]
 gi|163259764|emb|CAP42065.1| Electron transport complex protein, type B subunit [Bordetella
           petrii]
          Length = 213

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 24/70 (34%), Gaps = 10/70 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L      E  CI C LC   CP  AI   +             + +    C  C LC   
Sbjct: 76  LTVARIDEAHCIGCTLCIRACPVDAIVGANK----------RMHTVLADWCTGCDLCVAP 125

Query: 113 CPVDAIVEGP 122
           CPVD I   P
Sbjct: 126 CPVDCIDMAP 135


>gi|153953876|ref|YP_001394641.1| hypothetical protein CKL_1251 [Clostridium kluyveri DSM 555]
 gi|219854491|ref|YP_002471613.1| hypothetical protein CKR_1148 [Clostridium kluyveri NBRC 12016]
 gi|146346757|gb|EDK33293.1| Conserved hypothetical protein containing a ferredoxin domain
           [Clostridium kluyveri DSM 555]
 gi|219568215|dbj|BAH06199.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 273

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/125 (20%), Positives = 37/125 (29%), Gaps = 21/125 (16%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRY--PN 58
           M I R     ++        F+            N P+ K        G     R   P 
Sbjct: 145 MTIARNFAHSMY------GKFVTGHEIKNLTVKGNKPYRKYYKPRNKEGVPVDIRKVTPK 198

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + C  CK+C  +CP  +I  +   + +               CI CG C + CP  A 
Sbjct: 199 TNDNCTDCKICVNVCPMGSIDFKDVSKLN-------------GICIKCGACIKKCPHGAK 245

Query: 119 VEGPN 123
                
Sbjct: 246 YYDDE 250


>gi|219670113|ref|YP_002460548.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
 gi|219540373|gb|ACL22112.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfitobacterium hafniense DCB-2]
          Length = 367

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 26/60 (43%), Gaps = 12/60 (20%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            EERC AC  C+  CPA AIT+    R            ID   CI CG C   C   AI
Sbjct: 191 NEERCTACGKCKNWCPASAITVAGFAR------------IDEKLCIGCGECAVTCTFKAI 238



 Score = 33.5 bits (75), Expect = 9.4,   Method: Composition-based stats.
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 97  DIDMIKCIYCGLCQEACPVDAI 118
            ++  +C  CG C+  CP  AI
Sbjct: 189 QVNEERCTACGKCKNWCPASAI 210


>gi|73667997|ref|YP_304012.1| coenzyme F420-reducing hydrogenase subunit gamma [Methanosarcina
           barkeri str. Fusaro]
 gi|72395159|gb|AAZ69432.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanosarcina
           barkeri str. Fusaro]
          Length = 293

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 28/75 (37%), Gaps = 13/75 (17%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L      +  C+ C  C A CP  AIT+E G               +   CI CG C  A
Sbjct: 213 LMYDVINQGLCMGCGTCAASCPVHAITLEFGK-----------PQGERDLCIKCGSCYGA 261

Query: 113 CP--VDAIVEGPNFE 125
           CP     +   P FE
Sbjct: 262 CPRSFFNLDVIPEFE 276



 Score = 38.5 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 80  IESGPRCHDGTRRTVRYD-IDMIKCIYCGLCQEACPVDAIVE 120
           ++   R   G    + YD I+   C+ CG C  +CPV AI  
Sbjct: 199 MDLAKRGTSGCFCDLMYDVINQGLCMGCGTCAASCPVHAITL 240


>gi|15679689|ref|NP_276806.1| putative ATPase RIL [Methanothermobacter thermautotrophicus str.
           Delta H]
 gi|2622826|gb|AAB86167.1| RNase L inhibitor [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 623

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 1/60 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +RC   K C  +C      +           +T +  I    C  CG+C + CP  AI
Sbjct: 40  DHDRCQP-KKCNYVCIEYCPGVRMDEDTITIDEKTKKPIISEELCSGCGICTKRCPFKAI 98


>gi|332882373|ref|ZP_08450001.1| 4Fe-4S binding domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332679757|gb|EGJ52726.1| 4Fe-4S binding domain protein [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 517

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 13/73 (17%)

Query: 47  FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
           F   +A  +      +C+ C LCE  C A  I I+                ID  +C+ C
Sbjct: 232 FLSRYAWLKPVIDTSKCVNCNLCERNCKASCIHIKEHK-------------IDYSRCVAC 278

Query: 107 GLCQEACPVDAIV 119
             C + CP  AI 
Sbjct: 279 MNCIDKCPKKAIH 291



 Score = 38.5 bits (88), Expect = 0.31,   Method: Composition-based stats.
 Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           + C  C   CP+ AI +         + R     ++  +CI CG C+  CP
Sbjct: 451 VECGNCARHCPSGAIQMVPSVSGIPDSPRLPV--VNEERCIGCGSCENLCP 499



 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 33/109 (30%), Gaps = 3/109 (2%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
            +K             +   N    C AC+LC + CP   +   S          +    
Sbjct: 344 EKKIPERKVHLKPAGAQGVHNFASHCTACQLCVSACPNDVLRPSSSIETWMQPEMSYERG 403

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGD 146
               +C+    C E CP  AI      E ++       +  E  + N D
Sbjct: 404 YCRPECVR---CTEVCPNGAIRSLTVAEKSSVQIGHAVFVYENCVVNTD 449



 Score = 34.3 bits (77), Expect = 5.8,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 22/91 (24%), Gaps = 4/91 (4%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +    S                     C  C  +CP  AI   +             
Sbjct: 379 CPNDVLRPSSSIETWMQPEMSYERGYCRPECVRCTEVCPNGAIRSLTVAEKSSVQIGHAV 438

Query: 96  Y----DIDMIKCIYCGLCQEACPVDAIVEGP 122
           +     +     + CG C   CP  AI   P
Sbjct: 439 FVYENCVVNTDGVECGNCARHCPSGAIQMVP 469


>gi|320353705|ref|YP_004195044.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
           [Desulfobulbus propionicus DSM 2032]
 gi|320122207|gb|ADW17753.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
           [Desulfobulbus propionicus DSM 2032]
          Length = 683

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 59  GEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
              +C+ C  C   C       AI                  D+   +C+ CG C   CP
Sbjct: 146 DPNKCVLCGDCVRFCDEIQSIGAIDFAFRGHDAMVLPAFGH-DLGTTECVNCGQCASVCP 204

Query: 115 VDAI 118
             A+
Sbjct: 205 TGAL 208


>gi|319937123|ref|ZP_08011530.1| pyruvate-flavodoxin oxidoreductase [Coprobacillus sp. 29_1]
 gi|319807489|gb|EFW04082.1| pyruvate-flavodoxin oxidoreductase [Coprobacillus sp. 29_1]
          Length = 1172

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 25/91 (27%), Gaps = 22/91 (24%)

Query: 57  PNGEERCIACKLCEAICPA------------------QAITIESGPRCHDGTRRTVRYDI 98
              +E CI C  C  +CP                           P   +      R  +
Sbjct: 682 RWEKENCIQCNNCVMVCPHATIRAFLLNDEEMNALPEDIHDDVLKPIGKNVDGLAYRIQV 741

Query: 99  DMIKCIYCGLCQEACP----VDAIVEGPNFE 125
               C+ CGLC   CP      A+   P  E
Sbjct: 742 SPDNCVGCGLCVTECPGKAGKKALTMVPVKE 772


>gi|318041114|ref|ZP_07973070.1| pyruvate oxidoreductase [Synechococcus sp. CB0101]
          Length = 1180

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/114 (18%), Positives = 32/114 (28%), Gaps = 24/114 (21%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI----------------TIESGPRC 86
           TS   +   A +      + C+ C  C  +CP   I                   +  R 
Sbjct: 676 TSQWEKRNIAEQVPVWEPDLCVQCGKCVMVCPHAVIRAKVAEPEALAAAPEGFRSAPARD 735

Query: 87  HDGTRRTVRYDIDMIKCIYCGLCQEACPVD--------AIVEGPNFEFATETRQ 132
              + +     +    C  C LC E CP          A+   P      + RQ
Sbjct: 736 AHWSGQRFTIQVSAEDCTGCNLCVEVCPARDRREPRRKALNMAPQRPLREQNRQ 789


>gi|317498714|ref|ZP_07957005.1| iron only hydrogenase large subunit domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894008|gb|EFV16199.1| iron only hydrogenase large subunit domain-containing protein
           [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 570

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 31/90 (34%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93
           ++ P++K      +   + L R  +   +C+ C           I   SG         +
Sbjct: 119 VDSPYKKEICIEEWDTRYPLVRDASKCVKCMRCIQVCDKIQGMHIWDVSGTGARTTVGVS 178

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
              DI    C  CG C   CP  A+ E  +
Sbjct: 179 ENRDIKTADCALCGQCITHCPTGALRERDD 208


>gi|253996419|ref|YP_003048483.1| cyclic nucleotide-binding protein [Methylotenera mobilis JLW8]
 gi|253983098|gb|ACT47956.1| cyclic nucleotide-binding protein [Methylotenera mobilis JLW8]
          Length = 824

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 6/57 (10%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            +C+ CE     +    ++  R   G             CI CG CQ+ CP D I  
Sbjct: 690 TSCRHCEHPHCMKDCPPDAIHRAPHGEVYID------DSCIGCGNCQQNCPYDVIQM 740



 Score = 35.1 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 19/94 (20%), Positives = 26/94 (27%), Gaps = 21/94 (22%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
                 R  H      +    CI C  C+  CP   I +       + +   +   I   
Sbjct: 705 PPDAIHRAPHGEVYIDD---SCIGCGNCQQNCPYDVIQMAVIQDQPEQSLWQMLLGIRPK 761

Query: 102 ------------KCIYCG------LCQEACPVDA 117
                       KC  C       +C  ACPV A
Sbjct: 762 QVASTNNTKVAVKCDMCKDIADGPVCVRACPVGA 795


>gi|210610147|ref|ZP_03288284.1| hypothetical protein CLONEX_00470 [Clostridium nexile DSM 1787]
 gi|210152607|gb|EEA83613.1| hypothetical protein CLONEX_00470 [Clostridium nexile DSM 1787]
          Length = 590

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 3/78 (3%)

Query: 59  GEERCIACKLCEAIC---PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
              +CI C  C  +C    +  I    G         +    I+   C  CG C   CPV
Sbjct: 141 DSSKCIKCMRCIQVCDKVQSLHIWDVEGTGSRTTVNVSGHKTIEESACSLCGQCVTHCPV 200

Query: 116 DAIVEGPNFEFATETRQE 133
            A+ E  + E   E   +
Sbjct: 201 GALRERNDTEKVWEALSD 218


>gi|163644640|gb|ABY28313.1| putative reductive dehalogenase [Dehalococcoides sp. enrichment
           culture clone KS24(KSRdA09)]
          Length = 468

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 3/60 (5%)

Query: 60  EERCIACKLCEAICPAQAITIES---GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            + C  C +C   CP  AI                    + ++   C +C +CQ  CP +
Sbjct: 352 RKFCYTCGICADACPFGAIQTGDPSFEGYKPWMNNGYEAWRVNYENCTHCPVCQGTCPFN 411



 Score = 35.1 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 10/20 (50%), Positives = 12/20 (60%)

Query: 103 CIYCGLCQEACPVDAIVEGP 122
           C  CG+C +ACP  AI  G 
Sbjct: 355 CYTCGICADACPFGAIQTGD 374


>gi|160893745|ref|ZP_02074529.1| hypothetical protein CLOL250_01299 [Clostridium sp. L2-50]
 gi|156864730|gb|EDO58161.1| hypothetical protein CLOL250_01299 [Clostridium sp. L2-50]
          Length = 561

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 3/68 (4%)

Query: 59  GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQEACPV 115
              +CI C  C   C   Q + +          +    +D  +    C+ CG C   CP 
Sbjct: 141 DPNKCILCGDCVRTCDEIQGLGVIDFAFRGSKMKVQPAFDKPLAETDCVGCGQCAVVCPT 200

Query: 116 DAIVEGPN 123
            AI    N
Sbjct: 201 AAISIRTN 208



 Score = 34.7 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 13/76 (17%), Positives = 21/76 (27%), Gaps = 8/76 (10%)

Query: 46  RFRGEHALRRYPNGEERCIAC---KLCE-----AICPAQAITIESGPRCHDGTRRTVRYD 97
           ++R         +    C  C    +C            A+   +  +       +    
Sbjct: 80  QYRKLIIELLLSSHCRDCTTCQKNGMCALQSLAYKVGVHAVRFLNNKKEEKIDMSSPSIV 139

Query: 98  IDMIKCIYCGLCQEAC 113
            D  KCI CG C   C
Sbjct: 140 RDPNKCILCGDCVRTC 155


>gi|197118878|ref|YP_002139305.1| aldo/keto reductase family oxidoreductase [Geobacter bemidjiensis
           Bem]
 gi|197088238|gb|ACH39509.1| oxidoreductase, aldo/keto reductase family [Geobacter bemidjiensis
           Bem]
          Length = 316

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 20/57 (35%), Gaps = 11/57 (19%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            C  C  C   C   A+ +  G              +D  +CI CG C  ACP   I
Sbjct: 268 FCKGCGACVPACTNDALRLVDGKAV-----------VDEAECILCGYCGAACPEFMI 313


>gi|162605692|ref|XP_001713361.1| RNase L inhibitor [Guillardia theta]
 gi|13794293|gb|AAK39670.1|AF083031_27 RNase L inhibitor [Guillardia theta]
          Length = 598

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 21/56 (37%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
             C   C       ++G  C          +I  I CI CG+C + CP DAI    
Sbjct: 24  NKCNKECKKNCPVEKAGKLCIKIEDSNNIVNIHEINCIGCGICVKKCPYDAIKIIN 79


>gi|48477969|ref|YP_023675.1| ferredoxin [Picrophilus torridus DSM 9790]
 gi|48430617|gb|AAT43482.1| ferredoxin [Picrophilus torridus DSM 9790]
          Length = 70

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 23/60 (38%), Gaps = 11/60 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C  C  C  +CP  AI ++               DI+  KCI CG C   CP  AI
Sbjct: 12  DRSLCNYCGACVGMCPTDAIFMDE-----------TVIDINEEKCIKCGFCVVGCPTGAI 60


>gi|329955641|ref|ZP_08296549.1| 4Fe-4S binding domain protein [Bacteroides clarus YIT 12056]
 gi|328526044|gb|EGF53068.1| 4Fe-4S binding domain protein [Bacteroides clarus YIT 12056]
          Length = 277

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 22/76 (28%), Gaps = 12/76 (15%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G    R      E C  C  C A CPA AI                       KCI C  
Sbjct: 196 GVPTPRIPAVDAELCNHCGYCAAHCPAGAIAKGDECNTD------------AEKCIRCCA 243

Query: 109 CQEACPVDAIVEGPNF 124
           C + CP  A      F
Sbjct: 244 CVKGCPQKARTFDTPF 259


>gi|327310274|ref|YP_004337171.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Thermoproteus uzoniensis 768-20]
 gi|326946753|gb|AEA11859.1| indolepyruvate ferredoxin oxidoreductase alpha subunit
           [Thermoproteus uzoniensis 768-20]
          Length = 595

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 10/74 (13%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R      ++    ++C +C +C  +    AI      +            ID   C  C 
Sbjct: 517 RSGFKPPKFYVVADKCRSCGICYNVLKCYAIAKLPDGKA----------WIDPSLCSGCS 566

Query: 108 LCQEACPVDAIVEG 121
           +C + CP DAI   
Sbjct: 567 MCAQVCPYDAIKPT 580


>gi|313113434|ref|ZP_07799023.1| 4Fe-4S binding domain protein [Faecalibacterium cf. prausnitzii
           KLE1255]
 gi|310624161|gb|EFQ07527.1| 4Fe-4S binding domain protein [Faecalibacterium cf. prausnitzii
           KLE1255]
          Length = 296

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 15/67 (22%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L +      +C++C  C   C                    +    +  +CI CG+C +A
Sbjct: 229 LFQMRVDTHKCVSCGACAKACKMD---------------VDITKTPNHAECIRCGMCMKA 273

Query: 113 CPVDAIV 119
           CP DAI 
Sbjct: 274 CPTDAIQ 280


>gi|306821642|ref|ZP_07455240.1| ferredoxin hydrogenase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304550387|gb|EFM38380.1| ferredoxin hydrogenase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 578

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 5/69 (7%)

Query: 59  GEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
              +CI CK CE +C       A+T + G   +          +    C +CG C   CP
Sbjct: 147 DANKCILCKRCETMCNEIQTVGALT-DVGRGFNTYVGSAFNDAMYETTCTFCGQCLAVCP 205

Query: 115 VDAIVEGPN 123
             A+ E  N
Sbjct: 206 TGALTEVNN 214


>gi|262089319|gb|ACY24539.1| ferredoxin [uncultured crenarchaeote 76h13]
          Length = 207

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 2/62 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + C+A   C   CP         P      ++   + I    CI+C  C+  CP   +
Sbjct: 143 DFDICVADGACIEACPVNVYEWLDTPGHPASEKKP--FMIREKDCIFCMACENVCPPQCV 200

Query: 119 VE 120
             
Sbjct: 201 KI 202


>gi|289523003|ref|ZP_06439857.1| putative iron-sulfur cluster-binding protein [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503546|gb|EFD24710.1| putative iron-sulfur cluster-binding protein [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 382

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 15/85 (17%)

Query: 43  TSPRFRGEHALRRY---PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
                RG             EE+C+ C +C  +CP +AI ++  PR            I+
Sbjct: 303 LPTWLRGWTHRWVALSPRLREEKCVKCGICADVCPRKAIRMDPLPR------------IN 350

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNF 124
              C+ C  C E CP  A+    N 
Sbjct: 351 RAMCVKCLCCHEMCPTGAMEVHENM 375


>gi|261403601|ref|YP_003247825.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus vulcanius M7]
 gi|261370594|gb|ACX73343.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus vulcanius M7]
          Length = 391

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 38/108 (35%), Gaps = 14/108 (12%)

Query: 29  KAKTTINYPFEKGSTSPRFRGEHALRRYP-------------NGEERCIACKLCEAICPA 75
           K K  +  P E    +    G                       + +C+ C +C   CP 
Sbjct: 121 KPKKEVKAPKEPIVVTDDCVGCGVCVPECPVGAITLEDGKAVIDKSKCVYCSICAQTCPW 180

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
            AI   +G       +   ++++D  KC+YC  C E CP D I    N
Sbjct: 181 NAIF-VAGKIPKKRRKEVKKFEVDAEKCVYCLKCVEICPGDMIKVDEN 227



 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 3/73 (4%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
             +    C  C  C  +CP  A+            ++  R +    KC  CG C  ACP+
Sbjct: 26  DIDSFRVCDLCMECVMVCPTGALM---EEEIEVNGKKLKRVNYLAHKCEKCGACANACPI 82

Query: 116 DAIVEGPNFEFAT 128
                   F ++ 
Sbjct: 83  GIKRVDDTFPYSK 95



 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 3/54 (5%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
             CI C  C   CP  A+ +    +     +   R +     C  CG C E CP
Sbjct: 301 RMCIVCGACTVACPTGALKL---GKIEHNGKEYNRIEFSPYLCDKCGKCVEVCP 351



 Score = 39.3 bits (90), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID-MIKCIYCGLCQEACP 114
           +P  +  C+ C+ C  +CP + I+I           +  +  I     C+ CG+C   CP
Sbjct: 91  FPYSKGHCVLCQKCIDVCPIEIISIPGVIDKPKKEVKAPKEPIVVTDDCVGCGVCVPECP 150

Query: 115 VDAIVEGP 122
           V AI    
Sbjct: 151 VGAITLED 158


>gi|256839950|ref|ZP_05545459.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides sp. D13]
 gi|256738880|gb|EEU52205.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides sp. D13]
          Length = 596

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 59  GEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
              +CI C+ CE +C       A+T  +       +    R D+    C YCG C   CP
Sbjct: 148 NMNKCIMCRRCETMCNTIQTVGALTAVNRGFNAAVSTAFER-DMAGSTCSYCGQCVSVCP 206

Query: 115 VDAI 118
           V+A+
Sbjct: 207 VNAL 210


>gi|261402831|ref|YP_003247055.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus vulcanius M7]
 gi|261369824|gb|ACX72573.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus vulcanius M7]
          Length = 391

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/108 (23%), Positives = 38/108 (35%), Gaps = 14/108 (12%)

Query: 29  KAKTTINYPFEKGSTSPRFRGEHALRRYP-------------NGEERCIACKLCEAICPA 75
           K K  +  P E    +    G                       + +C+ C +C   CP 
Sbjct: 121 KPKKEVKAPKEPIVVTDDCVGCGVCVPECPVGAITLEDGKAVIDKSKCVYCSICAQTCPW 180

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
            AI   +G       +   ++++D  KC+YC  C E CP D I    N
Sbjct: 181 NAIF-VAGKIPKKRRKEVKKFEVDAEKCVYCLKCVEICPGDMIKVDEN 227



 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 3/73 (4%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
             +    C  C  C  +CP  A+            ++  R +    KC  CG C  ACP+
Sbjct: 26  DIDSFRVCDLCMECVMVCPTGALM---EEEIEVNGKKLKRVNYLAHKCEKCGACANACPI 82

Query: 116 DAIVEGPNFEFAT 128
                   F ++ 
Sbjct: 83  GIKRVDDTFPYSK 95



 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 3/54 (5%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
             CI C  C   CP  A+ +    +     +   R +     C  CG C E CP
Sbjct: 301 RMCIVCGACTVACPTGALKL---GKIEHNGKEYNRIEFSPYLCDKCGKCVEVCP 351



 Score = 39.3 bits (90), Expect = 0.16,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID-MIKCIYCGLCQEACP 114
           +P  +  C+ C+ C  +CP + I+I           +  +  I     C+ CG+C   CP
Sbjct: 91  FPYSKGHCVLCQKCIDVCPIEIISIPGVIDKPKKEVKAPKEPIVVTDDCVGCGVCVPECP 150

Query: 115 VDAIVEGP 122
           V AI    
Sbjct: 151 VGAITLED 158


>gi|240948591|ref|ZP_04752964.1| electron transport complex protein RnfB [Actinobacillus minor
           NM305]
 gi|240297099|gb|EER47670.1| electron transport complex protein RnfB [Actinobacillus minor
           NM305]
          Length = 203

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 21/64 (32%), Gaps = 10/64 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E+ CI C  C   CP  AI   +             + +    C  C LC   CP +
Sbjct: 110 FIHEDMCIGCTKCIQACPVDAIIGTNK----------AMHTVIADLCTGCELCIAPCPTN 159

Query: 117 AIVE 120
            I  
Sbjct: 160 CIEM 163



 Score = 38.2 bits (87), Expect = 0.35,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 5/53 (9%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
             +      T+E                I    CI C  C +ACPVDAI+   
Sbjct: 88  ADLMGVDVPTMEGEEAPET-----KVAFIHEDMCIGCTKCIQACPVDAIIGTN 135


>gi|288573773|ref|ZP_06392130.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569514|gb|EFC91071.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 272

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 12/59 (20%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
             E C+ C  C A+CP  A+     P   DG             C +C  C +ACP  A
Sbjct: 189 DVEMCVHCGKCAAVCPVGAVDS-KDPNVTDGVA-----------CTFCCACVKACPTGA 235



 Score = 35.1 bits (79), Expect = 3.8,   Method: Composition-based stats.
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 101 IKCIYCGLCQEACPVDAI 118
             C++CG C   CPV A+
Sbjct: 191 EMCVHCGKCAAVCPVGAV 208


>gi|256829736|ref|YP_003158464.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfomicrobium baculatum DSM 4028]
 gi|256578912|gb|ACU90048.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfomicrobium baculatum DSM 4028]
          Length = 398

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 1/55 (1%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
              CI C  C  +CPA+                + R       C+ CG+C   CP
Sbjct: 315 PNPCINCGECVLVCPARIQPGMISRYAEFNIFESTRSQHVEA-CLECGMCTFVCP 368



 Score = 34.3 bits (77), Expect = 6.2,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 13/42 (30%), Gaps = 4/42 (9%)

Query: 98  IDMIKCIYCGLCQEACPVD----AIVEGPNFEFATETRQELY 135
           +    CI CG C   CP       I     F     TR +  
Sbjct: 313 VQPNPCINCGECVLVCPARIQPGMISRYAEFNIFESTRSQHV 354


>gi|171058237|ref|YP_001790586.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Leptothrix cholodnii SP-6]
 gi|170775682|gb|ACB33821.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Leptothrix
           cholodnii SP-6]
          Length = 438

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 27/78 (34%), Gaps = 14/78 (17%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                  RCI    C   CP  A+ +  G              ++   CI  G CQ ACP
Sbjct: 48  HPVIDPARCIGSGSCTKACPEDALGMVGGKAVL----------VNASACIGHGACQAACP 97

Query: 115 VDAIVEGPNFEFATETRQ 132
            DAI       F TE R 
Sbjct: 98  FDAISLV----FGTEKRG 111


>gi|116747465|ref|YP_844152.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
            [Syntrophobacter fumaroxidans MPOB]
 gi|116696529|gb|ABK15717.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
            [Syntrophobacter fumaroxidans MPOB]
          Length = 1116

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 21/59 (35%), Gaps = 6/59 (10%)

Query: 59   GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
             E RC  C  C   CP QAI+                  +D   C  CG C   CP DA
Sbjct: 1044 DESRCRGCGRCLQACPYQAISFRKNGLGG------SHAVVDEALCKGCGNCISVCPSDA 1096



 Score = 37.0 bits (84), Expect = 0.84,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 8/65 (12%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           LR   N   RCI         P +  +I+  P+      R     +D  +C  CG C E 
Sbjct: 69  LRILKNPRIRCI--------LPGEVQSIKHTPQGFCARYRKNPTFVDPERCTLCGRCAEV 120

Query: 113 CPVDA 117
           CP  A
Sbjct: 121 CPAAA 125



 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 98   IDMIKCIYCGLCQEACPVDAIVEGPN 123
            +D  +C  CG C +ACP  AI    N
Sbjct: 1043 VDESRCRGCGRCLQACPYQAISFRKN 1068


>gi|90410365|ref|ZP_01218381.1| hypothetical NADPH-dependent glutamate synthase [Photobacterium
           profundum 3TCK]
 gi|90328606|gb|EAS44890.1| hypothetical NADPH-dependent glutamate synthase [Photobacterium
           profundum 3TCK]
          Length = 543

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 21/59 (35%), Gaps = 9/59 (15%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            C  C  C   CP  AIT            ++  Y +D  KC  C  C   CP  AI  
Sbjct: 488 NCFECNGCLGACPHGAITYLG---------KSKGYKVDYDKCTGCEACYSQCPCHAIEM 537


>gi|20094676|ref|NP_614523.1| MinD family protein [Methanopyrus kandleri AV19]
 gi|19887840|gb|AAM02453.1| MinD superfamily P-loop ATPase containing an inserted ferredoxin
           domain [Methanopyrus kandleri AV19]
          Length = 262

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 12/61 (19%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
             E+ C  C  C  +C   A+                 +D+D   C  CGLC E+CP  A
Sbjct: 61  EDEDACDLCGTCARVCAPGALV------------VGRSWDLDPDLCHGCGLCIESCPNGA 108

Query: 118 I 118
           +
Sbjct: 109 L 109


>gi|15922648|ref|NP_378317.1| hypothetical protein ST2316 [Sulfolobus tokodaii str. 7]
 gi|15623438|dbj|BAB67426.1| 627aa long hypothetical protein [Sulfolobus tokodaii str. 7]
          Length = 627

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/111 (18%), Positives = 32/111 (28%), Gaps = 12/111 (10%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            N    CI C  C  +CP    T                     I C  CG C + CP +
Sbjct: 286 ENNLNGCIMCGKCVDVCPYVEYTKSKIYSPLGFYVLQSLGSSVQINCHMCGKCVDVCPAN 345

Query: 117 AIVEGPNFEFATETRQELYYDKERLLN-----------NGDRWESEIVRNI 156
             +     + A          + +L                R+E  I++++
Sbjct: 346 LDIISDISKSAVYDISN-VRTENKLKELKSEKVILITPISSRFEERILKSL 395


>gi|116620502|ref|YP_822658.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Candidatus Solibacter usitatus Ellin6076]
 gi|116223664|gb|ABJ82373.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Candidatus
           Solibacter usitatus Ellin6076]
          Length = 383

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 11/62 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +  C +C  CE  C   AIT   G              +D  +CI C LC   CP  A+
Sbjct: 290 DDAACESCGACEMRCQMDAITSPEGKAV-----------VDRARCIGCALCVSTCPSGAL 338

Query: 119 VE 120
             
Sbjct: 339 RL 340


>gi|332664441|ref|YP_004447229.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332333255|gb|AEE50356.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Haliscomenobacter hydrossis DSM 1100]
          Length = 529

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 9/53 (16%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           +CI+C  C   C           R           DI    C+ CG+C   CP
Sbjct: 451 QCISCGNCSTYCEMGIDVRAYAQRGQ---------DIVRASCVGCGICAAVCP 494


>gi|328953059|ref|YP_004370393.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Desulfobacca acetoxidans DSM 11109]
 gi|328453383|gb|AEB09212.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Desulfobacca acetoxidans DSM 11109]
          Length = 97

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 10/77 (12%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G+   +     + RCI C +C  +CP  AI  E              +D+D   C  CG+
Sbjct: 31  GDWRSQHPVWTKSRCIRCGVCWTVCPEPAIIQEPNG----------YFDMDPDYCKGCGI 80

Query: 109 CQEACPVDAIVEGPNFE 125
           C   C    I   P  E
Sbjct: 81  CARECVTGCITMVPEEE 97


>gi|326431801|gb|EGD77371.1| ABC transporter ABCE1 [Salpingoeca sp. ATCC 50818]
          Length = 602

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 1/64 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++C   K C   C      +  G  C + T  +   +I  + CI CG+C + CP  AI
Sbjct: 12  NHDKCKP-KRCRQECKRSCPVVRMGKMCIEVTPTSKIANISEVLCIGCGICVKKCPFGAI 70

Query: 119 VEGP 122
               
Sbjct: 71  NIIN 74


>gi|310826460|ref|YP_003958817.1| Fe-S cluster domain protein [Eubacterium limosum KIST612]
 gi|308738194|gb|ADO35854.1| Fe-S cluster domain protein [Eubacterium limosum KIST612]
          Length = 452

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 11/65 (16%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +      +++C+ C  C   CP  AI +  G              I   KCI CG C   
Sbjct: 5   MHSVYLDKDKCLGCTTCLRSCPTGAIRVREGKA-----------KIIESKCIDCGECIRV 53

Query: 113 CPVDA 117
           CP  A
Sbjct: 54  CPHHA 58


>gi|304317899|ref|YP_003853044.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302779401|gb|ADL69960.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 372

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 25/58 (43%), Gaps = 11/58 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C AC+ C   CP  AIT+  G              ID  KCI CG C   C  DAI
Sbjct: 193 KNCTACQTCIKNCPEDAITLVDGKAY-----------IDPDKCIGCGECITMCQYDAI 239


>gi|294867463|ref|XP_002765111.1| pyruvate:ferredoxin oxidoreductase/NADPH-cytochrome P450, putative
           [Perkinsus marinus ATCC 50983]
 gi|239865033|gb|EEQ97828.1| pyruvate:ferredoxin oxidoreductase/NADPH-cytochrome P450, putative
           [Perkinsus marinus ATCC 50983]
          Length = 1814

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/117 (22%), Positives = 33/117 (28%), Gaps = 30/117 (25%)

Query: 51  HALRRYPNGEERCIACKLCEAICPA---------------QAITIESGPRCHDGTRRTVR 95
            AL       ++C  C  C   CP                Q  T +S           + 
Sbjct: 723 VALEVPEVDMDKCTQCNTCSMACPHAVIRPFLLSQDEVDRQPPTFDSRKAKGGAEVAGLY 782

Query: 96  YDID--MIKCIYCGLCQEACPVDAIVEG------------PNFEFATETRQELYYDK 138
           Y I      C  C +C  ACP DA+                 F  A   R E  +DK
Sbjct: 783 YRIQVSPYDCTGCEVCVNACPDDALRMVTLADTHEASSANWEFAVALPDRSER-FDK 838


>gi|288575165|ref|ZP_06393522.1| Indolepyruvate ferredoxin oxidoreductase [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570906|gb|EFC92463.1| Indolepyruvate ferredoxin oxidoreductase [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 620

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 28/97 (28%), Gaps = 24/97 (24%)

Query: 22  LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
           +  R+      T+          P +R          G   CI    C  +   QA    
Sbjct: 541 IVFRH---PCITM------LKVKPEYRPVKVDPSVCIGCGICIRDFNCPGLVWDQAT--- 588

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                        +  +D   C+ CG+C   CP  AI
Sbjct: 589 ------------GKAMVDDRYCVNCGVCVAVCPKGAI 613


>gi|73541017|ref|YP_295537.1| benzoyl-CoA oxygenase, component A [Ralstonia eutropha JMP134]
 gi|72118430|gb|AAZ60693.1| benzoyl-CoA oxygenase, component A [Ralstonia eutropha JMP134]
          Length = 417

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 11/69 (15%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
              ++++    E CI C  CE  CP  AIT +              Y +    C  C  C
Sbjct: 4   PEMIKQHLIDPEICIRCNTCEDTCPIDAITHDE-----------RNYVVKADVCNACNAC 52

Query: 110 QEACPVDAI 118
              CP  AI
Sbjct: 53  LSPCPTGAI 61



 Score = 33.5 bits (75), Expect = 8.9,   Method: Composition-based stats.
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVE 120
           ID   CI C  C++ CP+DAI  
Sbjct: 12  IDPEICIRCNTCEDTCPIDAITH 34


>gi|15603461|ref|NP_246535.1| quinol dehydrogenase membrane component [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|12721992|gb|AAK03680.1| NapH [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 291

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 5/76 (6%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
            R      ++C  C  C  +CP          R     +++    +    CI CG C + 
Sbjct: 216 FRIKVEHRQQCDNCMDCYNVCP-----EPQVLRDPLHAKKSESPLVLSKDCISCGRCIDV 270

Query: 113 CPVDAIVEGPNFEFAT 128
           CP    +    F  + 
Sbjct: 271 CPEKVFIFTTRFNHSV 286


>gi|327401007|ref|YP_004341846.1| acetyl-CoA decarbonylase/synthase complex subunit alpha
           [Archaeoglobus veneficus SNP6]
 gi|327316515|gb|AEA47131.1| Acetyl-CoA decarbonylase/synthase complex subunit alpha
           [Archaeoglobus veneficus SNP6]
          Length = 797

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 29/86 (33%), Gaps = 6/86 (6%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
           P F  E  L+   +   RC  C  C   CP      ++     DG      +      CI
Sbjct: 391 PPFMSEEELKTEID---RCTGCMNCVFACPHNLRIDKAMSAAKDGD--FSVFKTVEDSCI 445

Query: 105 YCGLCQEACPVDAIVEGPNFEFATET 130
            CG C++ CP   I        A+  
Sbjct: 446 ACGRCEQVCP-RDIRIVDVIMKASYD 470


>gi|302391065|ref|YP_003826885.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
           [Acetohalobium arabaticum DSM 5501]
 gi|302203142|gb|ADL11820.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
           [Acetohalobium arabaticum DSM 5501]
          Length = 583

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 24/72 (33%), Gaps = 3/72 (4%)

Query: 55  RYPNGEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDIDMI--KCIYCGLCQE 111
                  +CI C  C  +C   Q +           +  T  +D+      C  CG C  
Sbjct: 148 CLERDPNKCILCGRCVRVCNEIQEVAALDFTERGFNSTVTTAFDLPQSEINCTNCGQCAV 207

Query: 112 ACPVDAIVEGPN 123
            CPV AI E   
Sbjct: 208 VCPVGAITEVSE 219



 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 21/74 (28%), Gaps = 8/74 (10%)

Query: 48  RGEHALRRYPNGEERCIAC---KLCE-----AICPAQAITIESGPRCHDGTRRTVRYDID 99
           R  +      N    C+ C     CE            I  E   R H         + D
Sbjct: 93  RRMNVELLLANHPNECLTCDRNGTCELQQIAYDLGVHDIRFEGDTRDHPIDNDGPCLERD 152

Query: 100 MIKCIYCGLCQEAC 113
             KCI CG C   C
Sbjct: 153 PNKCILCGRCVRVC 166


>gi|301310274|ref|ZP_07216213.1| putative [Fe] hydrogenase, large subunit HymC [Bacteroides sp.
           20_3]
 gi|300831848|gb|EFK62479.1| putative [Fe] hydrogenase, large subunit HymC [Bacteroides sp.
           20_3]
          Length = 596

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 59  GEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
              +CI C+ CE +C       A+T  +       +    R D+    C YCG C   CP
Sbjct: 148 NMNKCIMCRRCETMCNTIQTVGALTAVNRGFNAAVSTAFER-DMAGSTCSYCGQCVSVCP 206

Query: 115 VDAI 118
           V+A+
Sbjct: 207 VNAL 210


>gi|262381802|ref|ZP_06074940.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_33B]
 gi|262296979|gb|EEY84909.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_33B]
          Length = 596

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 5/64 (7%)

Query: 59  GEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
              +CI C+ CE +C       A+T  +       +    R D+    C YCG C   CP
Sbjct: 148 NMNKCIMCRRCETMCNTIQTVGALTAVNRGFNAAVSTAFER-DMAGSTCSYCGQCVSVCP 206

Query: 115 VDAI 118
           V+A+
Sbjct: 207 VNAL 210


>gi|255013975|ref|ZP_05286101.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. 2_1_7]
          Length = 301

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 11/62 (17%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            ++CI C  C  +CP  A+T+       D              C  CG C E CP  A+ 
Sbjct: 49  RKKCIGCGACVDVCPTGALTLTEAGIVTD-----------RSLCRTCGRCAEVCPTLAME 97

Query: 120 EG 121
             
Sbjct: 98  MS 99


>gi|229495879|ref|ZP_04389605.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Porphyromonas
           endodontalis ATCC 35406]
 gi|229317192|gb|EEN83099.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Porphyromonas
           endodontalis ATCC 35406]
          Length = 1181

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 27/83 (32%), Gaps = 17/83 (20%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA----------------QAITIESGPRCHDGTR 91
           RG           E CI C  C  +CP                    T+E+  +      
Sbjct: 676 RGVATFVPVWK-MENCIQCNQCAFVCPHATIRPFLLDAAEKNTTGVATLEAMGKGLKEAG 734

Query: 92  RTVRYDIDMIKCIYCGLCQEACP 114
              R  +D++ C+ CG C   CP
Sbjct: 735 LGFRIQVDVLDCLGCGNCVNVCP 757


>gi|229037740|ref|ZP_04189575.1| Dihydroorotate dehydrogenase 1 [Bacillus cereus AH1271]
 gi|228727594|gb|EEL78735.1| Dihydroorotate dehydrogenase 1 [Bacillus cereus AH1271]
          Length = 416

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 4/63 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117
            ++ CI C  C   C   +           G++           C+ C LC   CPVD A
Sbjct: 338 NDDVCIKCNKCYISCEDTSHQCIEILTNDKGSKFLKV---REEDCVGCNLCSIVCPVDGA 394

Query: 118 IVE 120
           I  
Sbjct: 395 IDM 397


>gi|298531053|ref|ZP_07018454.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509076|gb|EFI32981.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 356

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 36/123 (29%), Gaps = 22/123 (17%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRY---PNGEERCIACKLCEAICPAQAITIESGPRC 86
            K    +  E       F    A R         + C+ C+ C   CP      E     
Sbjct: 112 RKIQCMHCLEPACAHSCFVKAFAKRPDGAVTYDPKVCVGCRYCMMACPFNIPAYE----- 166

Query: 87  HDGTRRTVRYDIDMIKCIYCG---------LCQEACPVDAIVEGPNFEFATETRQELYYD 137
                  +  D  + KC +C           C E CP  A+      E   E R+ +  +
Sbjct: 167 -----YHIALDPLVTKCTFCEHRLKEDREPACVEICPTRAMYFSTREEVLKEARKRIVNN 221

Query: 138 KER 140
            ++
Sbjct: 222 PDK 224


>gi|260821394|ref|XP_002606018.1| hypothetical protein BRAFLDRAFT_129513 [Branchiostoma floridae]
 gi|229291355|gb|EEN62028.1| hypothetical protein BRAFLDRAFT_129513 [Branchiostoma floridae]
          Length = 1044

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 23/68 (33%), Gaps = 14/68 (20%)

Query: 59   GEERCIACKLCEAICP---AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP- 114
             EE CI C  C   C     QAIT ++                    C  C LC   CP 
Sbjct: 954  DEEMCINCGKCYMTCNDSGYQAITFDAETHLPH----------VTDDCTGCTLCVSVCPI 1003

Query: 115  VDAIVEGP 122
            +D I   P
Sbjct: 1004 IDCIQMVP 1011


>gi|76666607|emb|CAJ31128.1| Iron-sulfur-binding protein, glutamate synthase subunit (DsrL/GltD)
           [uncultured sulfate-reducing bacterium]
          Length = 576

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 19/61 (31%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
               RC++C  C            +        +    Y I + KC  C  C E CP   
Sbjct: 513 EETTRCMSCGRCFGCENCWMYCQNTCFVKEQKPKPGAFYSIILEKCDGCKKCWEECPCGF 572

Query: 118 I 118
           I
Sbjct: 573 I 573


>gi|330835410|ref|YP_004410138.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Metallosphaera cuprina Ar-4]
 gi|329567549|gb|AEB95654.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Metallosphaera cuprina Ar-4]
          Length = 582

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 19/57 (33%), Gaps = 1/57 (1%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRC-HDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
              CI C  C  +CP      +             +    D   C +CG C+  CPV
Sbjct: 250 FSGCILCGKCVYVCPHVEQRDDKNYSPLGFFISLALNNQTDYANCHFCGKCENVCPV 306



 Score = 33.5 bits (75), Expect = 8.8,   Method: Composition-based stats.
 Identities = 8/22 (36%), Positives = 10/22 (45%)

Query: 103 CIYCGLCQEACPVDAIVEGPNF 124
           CI CG C   CP     +  N+
Sbjct: 253 CILCGKCVYVCPHVEQRDDKNY 274


>gi|300853895|ref|YP_003778879.1| Fe-Fe hydrogenase 2 [Clostridium ljungdahlii DSM 13528]
 gi|300434010|gb|ADK13777.1| Fe-Fe hydrogenase 2 [Clostridium ljungdahlii DSM 13528]
          Length = 462

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 10/59 (16%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                EE C  C+ C  +CP  AI  E G              I+  KC+ CG C + C
Sbjct: 7   MINIDEELCTGCRRCADVCPVDAIEGEQGKPQK----------INTEKCVMCGQCIQVC 55



 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 95  RYDIDMIKCIYCGLCQEACPVDAI 118
             +ID   C  C  C + CPVDAI
Sbjct: 7   MINIDEELCTGCRRCADVCPVDAI 30


>gi|269962090|ref|ZP_06176444.1| RnfC-related protein [Vibrio harveyi 1DA3]
 gi|269833174|gb|EEZ87279.1| RnfC-related protein [Vibrio harveyi 1DA3]
          Length = 910

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            CI C  C   CPA  +  +               ++++  CI CG C   CP
Sbjct: 377 ECIRCSQCAEACPAS-LLPQQLQWYAKSQEYEKLEELNLKDCIECGACAFVCP 428


>gi|255526305|ref|ZP_05393221.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           carboxidivorans P7]
 gi|296185227|ref|ZP_06853637.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
 gi|255510018|gb|EET86342.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           carboxidivorans P7]
 gi|296050061|gb|EFG89485.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
          Length = 417

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 9/62 (14%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E CI C  C   CP  AI I+           T +   D   C+ CG+C   CP  +I  
Sbjct: 290 ESCIGCGKCAKACPIDAIKIDP---------VTKKARTDENICLGCGICVRNCPKKSIYL 340

Query: 121 GP 122
             
Sbjct: 341 KH 342



 Score = 37.0 bits (84), Expect = 0.94,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 14/26 (53%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGP 122
                 CI CG C +ACP+DAI   P
Sbjct: 286 QFIEESCIGCGKCAKACPIDAIKIDP 311


>gi|297544314|ref|YP_003676616.1| hydrogenase, Fe-only [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
 gi|296842089|gb|ADH60605.1| hydrogenase, Fe-only [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
          Length = 581

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 59  GEERCIACKLCEAIC-PAQAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPV 115
              +C+ C+ C A+C   Q +           T     +   +    CI CG C E CPV
Sbjct: 144 DPNKCVLCRRCVAVCSEVQNVFAIGMVNRGFKTMVAPSFGRSLKDSPCISCGQCIEVCPV 203

Query: 116 DAIVEGP 122
            AI E  
Sbjct: 204 GAIYEKD 210


>gi|302878833|ref|YP_003847397.1| cyclic nucleotide-binding protein [Gallionella capsiferriformans
           ES-2]
 gi|302581622|gb|ADL55633.1| cyclic nucleotide-binding protein [Gallionella capsiferriformans
           ES-2]
          Length = 796

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 21/90 (23%), Gaps = 28/90 (31%)

Query: 59  GEERCIACKLCEAICPA----------QAITIESGPRCHDGTRRTVRYDID--------- 99
              RCI C  CE  C            +A +  +        R                 
Sbjct: 635 DYARCIRCNNCETSCADAHDGTSRLDREAGSTFAQIHVPTSCRHCEHPHCMKDCPPDAIH 694

Query: 100 ---------MIKCIYCGLCQEACPVDAIVE 120
                       CI CG CQ  CP   I  
Sbjct: 695 RSINGEVFISDNCIGCGNCQTNCPYGVIQM 724



 Score = 34.7 bits (78), Expect = 4.0,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 22/78 (28%), Gaps = 21/78 (26%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI---------------KCIY 105
           + CI C  C+  CP   I +         +   V   I                  KC  
Sbjct: 705 DNCIGCGNCQTNCPYGVIQMAVKQDYQKRSIWQVMLGISPSQAKPAASDALPKVAVKCDM 764

Query: 106 CG------LCQEACPVDA 117
           C       +C  ACP  A
Sbjct: 765 CKDIIGGPVCVRACPTGA 782


>gi|213408048|ref|XP_002174795.1| translation initiation factor RLI1 [Schizosaccharomyces japonicus
           yFS275]
 gi|212002842|gb|EEB08502.1| translation initiation factor RLI1 [Schizosaccharomyces japonicus
           yFS275]
          Length = 594

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 21/56 (37%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           K C   C      + +G  C + T       I    CI CG+C + CP  AI    
Sbjct: 20  KKCRQECRKSCPVVRTGKLCIEVTPNDRIAFISETLCIGCGICVKKCPFSAINIIN 75


>gi|217967301|ref|YP_002352807.1| Fe-S cluster domain protein [Dictyoglomus turgidum DSM 6724]
 gi|217336400|gb|ACK42193.1| Fe-S cluster domain protein [Dictyoglomus turgidum DSM 6724]
          Length = 443

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 11/70 (15%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
             E  +       +RC  C  C   CP +A+ + +G              I   +CI CG
Sbjct: 1   MSEKYIHSVAINLQRCRGCIHCIRHCPTEAMRVRNGKSL-----------IIPYRCIDCG 49

Query: 108 LCQEACPVDA 117
            C   CP  A
Sbjct: 50  ECIRVCPYHA 59


>gi|189485409|ref|YP_001956350.1| 4Fe-4S binding protein [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287368|dbj|BAG13889.1| 4Fe-4S binding protein [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 57

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 11/65 (16%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
             Y   E  C+ C  C   CP  AI  +              Y I+  KC  CG+C+  C
Sbjct: 1   MAYQINENACVGCGACAGSCPVSAIEQKEDK-----------YTINSDKCKGCGVCESTC 49

Query: 114 PVDAI 118
           PV AI
Sbjct: 50  PVSAI 54



 Score = 35.5 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           Y I+   C+ CG C  +CPV AI +  +
Sbjct: 3   YQINENACVGCGACAGSCPVSAIEQKED 30


>gi|156975237|ref|YP_001446144.1| electron transport complex protein RnfC [Vibrio harveyi ATCC
           BAA-1116]
 gi|156526831|gb|ABU71917.1| hypothetical protein VIBHAR_02966 [Vibrio harveyi ATCC BAA-1116]
          Length = 912

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            CI C  C   CPA  +  +               ++++  CI CG C   CP
Sbjct: 377 ECIRCSQCAEACPAS-LLPQQLQWYAKSQEYEKLEELNLKDCIECGACAFVCP 428


>gi|154482950|ref|ZP_02025398.1| hypothetical protein EUBVEN_00648 [Eubacterium ventriosum ATCC
           27560]
 gi|149736234|gb|EDM52120.1| hypothetical protein EUBVEN_00648 [Eubacterium ventriosum ATCC
           27560]
          Length = 272

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 7/75 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV-----RYDIDMIKCIYCGLCQEAC 113
             E+C AC  C A CP   I+I      +    R+              CI CGLC + C
Sbjct: 175 DREKCKACGKCVAACPKGLISIIPADHQYMVKCRSKDKGRDVMQACTAGCIGCGLCAKNC 234

Query: 114 PVDAIVEGPNFEFAT 128
           P DAI     +  AT
Sbjct: 235 PNDAIDF--EYNLAT 247



 Score = 41.6 bits (96), Expect = 0.037,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 21/60 (35%), Gaps = 11/60 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI C LC   CP  AI  E                I+  KC  CG+C   CP   I
Sbjct: 220 CTAGCIGCGLCAKNCPNDAIDFEYNLA-----------TINQDKCKNCGICAAKCPKKVI 268



 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 21/64 (32%), Gaps = 11/64 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C+    C   C   AI I +G              +D  KC  CG C  ACP   I
Sbjct: 146 CSYGCLGLGSCVKACEFDAIHIVNGKAL-----------VDREKCKACGKCVAACPKGLI 194

Query: 119 VEGP 122
              P
Sbjct: 195 SIIP 198


>gi|150403366|ref|YP_001330660.1| cobyrinic acid ac-diamide synthase [Methanococcus maripaludis C7]
 gi|150034396|gb|ABR66509.1| Cobyrinic acid ac-diamide synthase [Methanococcus maripaludis C7]
          Length = 285

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 23/62 (37%), Gaps = 11/62 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  C  C  C  +C   A++I                 +    C  CGLC  ACPV AI
Sbjct: 66  DENLCNNCGECSRLCKFNALSITPN-----------NTTVFEKLCHDCGLCYIACPVQAI 114

Query: 119 VE 120
            E
Sbjct: 115 SE 116


>gi|83944378|ref|ZP_00956833.1| dihydropyrimidine dehydrogenase [Sulfitobacter sp. EE-36]
 gi|83953420|ref|ZP_00962142.1| dihydropyrimidine dehydrogenase [Sulfitobacter sp. NAS-14.1]
 gi|83842388|gb|EAP81556.1| dihydropyrimidine dehydrogenase [Sulfitobacter sp. NAS-14.1]
 gi|83844922|gb|EAP82804.1| dihydropyrimidine dehydrogenase [Sulfitobacter sp. EE-36]
          Length = 434

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/112 (17%), Positives = 31/112 (27%), Gaps = 15/112 (13%)

Query: 14  KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRY----PNGEERCIACKLC 69
           +E +        Y      T      + +             Y       ++ CI+C  C
Sbjct: 297 QEMISGLS---EYMDDKGMTSVDQLVRRAVPNVTDWNQLNLNYVAKAKIDQDLCISCGRC 353

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DAIVE 120
            A C       E              + +   +C+ C LC   CPV D I  
Sbjct: 354 FAAC-------EDTSHQAIAMSEDRTFSVIDDECVACNLCVNVCPVEDCISM 398


>gi|167037823|ref|YP_001665401.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|167040723|ref|YP_001663708.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoanaerobacter sp. X514]
 gi|256752156|ref|ZP_05493022.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300914762|ref|ZP_07132078.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter sp. X561]
 gi|307724004|ref|YP_003903755.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Thermoanaerobacter sp. X513]
 gi|320116240|ref|YP_004186399.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
 gi|166854963|gb|ABY93372.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Thermoanaerobacter sp. X514]
 gi|166856657|gb|ABY95065.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Thermoanaerobacter pseudethanolicus ATCC 33223]
 gi|256748970|gb|EEU62008.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889697|gb|EFK84843.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter sp. X561]
 gi|307581065|gb|ADN54464.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoanaerobacter sp. X513]
 gi|319929331|gb|ADV80016.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoanaerobacter brockii subsp. finnii Ako-1]
          Length = 56

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 26/64 (40%), Gaps = 11/64 (17%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + CI+C  C A CP  AI    G            Y+ID   CI CG C+  CP
Sbjct: 1   MAHYITDECISCGACTAECPVDAIHEGDGK-----------YEIDPDTCIDCGACEAVCP 49

Query: 115 VDAI 118
             AI
Sbjct: 50  TGAI 53


>gi|332800160|ref|YP_004461659.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Tepidanaerobacter sp. Re1]
 gi|332697895|gb|AEE92352.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Tepidanaerobacter sp. Re1]
          Length = 593

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 10/70 (14%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           ++Y   EE C  C+ C         T    P  +        Y ID  +CI C +C + C
Sbjct: 534 KKYEVDEEICNGCRAC---------TRTGCPAINFSMNNKKSY-IDQAQCIGCSVCAQVC 583

Query: 114 PVDAIVEGPN 123
           PV+AI E   
Sbjct: 584 PVNAIHEKGE 593


>gi|325970887|ref|YP_004247078.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Spirochaeta sp. Buddy]
 gi|324026125|gb|ADY12884.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Spirochaeta sp. Buddy]
          Length = 354

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 9/71 (12%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                    CI C  C+  CP      E   +            +   +C+ CG C +AC
Sbjct: 280 MHIRTDVTSCIGCGACDRACPLSIPIQEKASKALA---------VHSSRCVGCGHCVDAC 330

Query: 114 PVDAIVEGPNF 124
           P   +     F
Sbjct: 331 PKHTLRYETTF 341


>gi|307247153|ref|ZP_07529205.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306856402|gb|EFM88553.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
          Length = 684

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 34/107 (31%), Gaps = 3/107 (2%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E  CI C  C   CP   +  +               +  +  CI CG+C   CP  
Sbjct: 379 PEPERSCIRCSSCSDACPVG-LLPQQLYWYARSEDHDKSKEYHLDACIECGVCAYVCP-S 436

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            I     F        E+    ++      R+E+   R +  +   R
Sbjct: 437 YIPLIQYFRQEKAKITEIEEKAKKAEEAKARFEAREAR-LQKEKDAR 482


>gi|303245128|ref|ZP_07331444.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
 gi|302484511|gb|EFL47459.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
          Length = 656

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 28/91 (30%), Gaps = 7/91 (7%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAIT-------IESGPRCHDGTRRTVRYDI 98
            F+ +   +     E +C  C  C  +CP +                         +Y I
Sbjct: 229 NFKVKILKKPRYLDETKCTGCGQCAEVCPIEVPNEFDMGLGTRKAIYKPFPQAVPAKYTI 288

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           D   CI CGLC   C   AI      E   E
Sbjct: 289 DKEHCIECGLCSTVCGPKAIDYNQKPELVEE 319



 Score = 40.9 bits (94), Expect = 0.068,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 6/64 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ C  C +C   CP  A  +             +  ++    C  CG C   CP  A+
Sbjct: 580 NEDICGGCGVCVKQCPYGAPIMVEKENGK------LVANVISALCKGCGTCAAGCPSGAM 633

Query: 119 VEGP 122
            +  
Sbjct: 634 EQHH 637


>gi|291543381|emb|CBL16490.1| glutamate synthase (NADPH) GltB2 subunit [Ruminococcus sp. 18P13]
          Length = 501

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 9/65 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++RCI C++CE  C  +  +  +                   KC+ C  C   CP  A+
Sbjct: 15  NQDRCIGCRVCERQCANEVHSYNAELDKMLSD---------ETKCVNCHRCVTLCPTHAL 65

Query: 119 VEGPN 123
               N
Sbjct: 66  KIVKN 70


>gi|316932168|ref|YP_004107150.1| formate dehydrogenase subunit alpha [Rhodopseudomonas palustris
           DX-1]
 gi|315599882|gb|ADU42417.1| formate dehydrogenase, alpha subunit [Rhodopseudomonas palustris
           DX-1]
          Length = 948

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 30/97 (30%), Gaps = 6/97 (6%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVR 95
           EK  +              +   +CI C  C   C     T     +G          ++
Sbjct: 146 EKHPSPGLDESNPYFTYDAS---KCIVCSRCVRACEEVQGTFALTIAGRGFDSVVSSGMQ 202

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
                 +C+ CG C +ACP   + E    E  T  R 
Sbjct: 203 ESFLGSECVSCGACVQACPTATLNEKSVIEIGTPERS 239


>gi|304316117|ref|YP_003851262.1| glutamate synthase (NADPH) [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777619|gb|ADL68178.1| Glutamate synthase (NADPH) [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 501

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 20/109 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA- 117
             +RCI CK+C   C  +  + +                    KC+ C  C   CP  A 
Sbjct: 15  DYDRCINCKVCMRQCANEVHSYDEDLDKMIEDDY---------KCVNCQRCVVMCPTHAL 65

Query: 118 --IVEGPNFEFATETRQELYYDKERLLNNGDRWES--EIVRNIVTDSPY 162
             I     F      R+   +  + + +   + E+   ++  +  D PY
Sbjct: 66  TIIKHPQVF------RENANWTYDAIRDIYKQAETGGVLLSAMGNDRPY 108


>gi|226312824|ref|YP_002772718.1| dihydropyrimidine dehydrogenase [Brevibacillus brevis NBRC 100599]
 gi|226095772|dbj|BAH44214.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599]
          Length = 425

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 25/78 (32%), Gaps = 3/78 (3%)

Query: 47  FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
           +   +        EE CI C  C   C     + +      D      R  +    C+ C
Sbjct: 326 YLNLNYKVVARIHEETCINCNKCHIACED--TSHQCIDIVPDAVTGKERLVVREEDCVGC 383

Query: 107 GLCQEACPVD-AIVEGPN 123
            LC   CPV+ AI     
Sbjct: 384 NLCSIVCPVEGAIEMVEI 401


>gi|167040761|ref|YP_001663746.1| hydrogenase, Fe-only [Thermoanaerobacter sp. X514]
 gi|300914799|ref|ZP_07132115.1| hydrogenase, Fe-only [Thermoanaerobacter sp. X561]
 gi|307723967|ref|YP_003903718.1| hydrogenase, Fe-only [Thermoanaerobacter sp. X513]
 gi|166855001|gb|ABY93410.1| hydrogenase, Fe-only [Thermoanaerobacter sp. X514]
 gi|300889734|gb|EFK84880.1| hydrogenase, Fe-only [Thermoanaerobacter sp. X561]
 gi|307581028|gb|ADN54427.1| hydrogenase, Fe-only [Thermoanaerobacter sp. X513]
          Length = 581

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 59  GEERCIACKLCEAIC-PAQAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPV 115
              +C+ C+ C ++C   Q +           T     +   +    CI CG C E CPV
Sbjct: 144 DPNKCVLCRRCVSVCSEVQNVFAIGMVNRGFNTMVAPSFGRSLKDSPCISCGQCIEVCPV 203

Query: 116 DAIVEGP 122
            AI E  
Sbjct: 204 GAIYEKD 210


>gi|160331512|ref|XP_001712463.1| rli1 [Hemiselmis andersenii]
 gi|159765911|gb|ABW98138.1| rli1 [Hemiselmis andersenii]
          Length = 599

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/52 (26%), Positives = 20/52 (38%)

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           C+  C      + +G  C        +  I    CI CG+C + CP  AI  
Sbjct: 21  CKFECKKNCPIVRTGKFCIQIDFSENKAKISEELCIGCGICIKKCPFGAITI 72


>gi|160915739|ref|ZP_02077947.1| hypothetical protein EUBDOL_01748 [Eubacterium dolichum DSM 3991]
 gi|158432215|gb|EDP10504.1| hypothetical protein EUBDOL_01748 [Eubacterium dolichum DSM 3991]
          Length = 1168

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 27/83 (32%), Gaps = 16/83 (19%)

Query: 51  HALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY 96
            A++      E CI C +C  +CP                A       +        ++Y
Sbjct: 678 IAVQVPTWHAENCIQCGICSFVCPHATIRPFLLTDEEVANAPMEFETLQAMGKGVENLKY 737

Query: 97  DID--MIKCIYCGLCQEACPVDA 117
            I      C+ CGLC   CP  A
Sbjct: 738 RIQVTPANCVGCGLCAVECPGKA 760



 Score = 34.7 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 13/47 (27%), Positives = 15/47 (31%), Gaps = 3/47 (6%)

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNG 145
               CI CG+C   CP   I     F    E       + E L   G
Sbjct: 686 HAENCIQCGICSFVCPHATIRP---FLLTDEEVANAPMEFETLQAMG 729


>gi|153953567|ref|YP_001394332.1| anaerobic sulfite reductase-related protein [Clostridium kluyveri
           DSM 555]
 gi|219854189|ref|YP_002471311.1| hypothetical protein CKR_0846 [Clostridium kluyveri NBRC 12016]
 gi|146346448|gb|EDK32984.1| Anaerobic sulfite reductase-related protein [Clostridium kluyveri
           DSM 555]
 gi|219567913|dbj|BAH05897.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 229

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 26/88 (29%), Gaps = 8/88 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +   T  +  G   +        RCI C+ C   C                T  + +
Sbjct: 59  CPNDCIKTRMQDFGIIGMTETQYDSYRCIGCQACVKNC--------KKRSTGALTFGSFK 110

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPN 123
              D  KCI CG C   CP  A      
Sbjct: 111 VVRDHDKCIGCGECVGKCPTGAWTRSDE 138


>gi|18369662|emb|CAD21635.1| putative dehydrogenase subunit [Azoarcus evansii]
          Length = 850

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 22/72 (30%), Gaps = 7/72 (9%)

Query: 55  RYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTV---RYDIDMIKCIYCG 107
            +      CI C+ C   C        +  +       G R  V      +    C +C 
Sbjct: 192 FFDRDYNLCIDCRRCLVACNDVRGVGCLEFKGSRDAWQGKRTYVGTIAPTLIESGCTFCQ 251

Query: 108 LCQEACPVDAIV 119
            C   CP  A++
Sbjct: 252 ACVTVCPTGALM 263


>gi|57234310|ref|YP_181645.1| iron-sulfur cluster-binding protein [Dehalococcoides ethenogenes
           195]
 gi|57224758|gb|AAW39815.1| iron-sulfur cluster-binding protein [Dehalococcoides ethenogenes
           195]
          Length = 136

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 9/63 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E RC  C  C  +CP  A +I+   R  +   +         KCI CG+C +ACP  A+
Sbjct: 82  NENRCTHCGACVTMCPVDAFSIDEDNREINFDAK---------KCIVCGICIQACPPRAM 132

Query: 119 VEG 121
              
Sbjct: 133 ELH 135


>gi|134299511|ref|YP_001113007.1| hydrogenase [Desulfotomaculum reducens MI-1]
 gi|134052211|gb|ABO50182.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
           [Desulfotomaculum reducens MI-1]
          Length = 659

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 20/63 (31%), Gaps = 3/63 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM---IKCIYCGLCQEACPV 115
              +CI C LC  +C  +        +        V           CI CG C   CP 
Sbjct: 142 DPNKCILCGLCVRVCKEKQGIGVWDFKNRGSRTDIVAAMDQPLSESACINCGQCIAVCPT 201

Query: 116 DAI 118
            A+
Sbjct: 202 GAL 204


>gi|327401089|ref|YP_004341928.1| pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta
           [Archaeoglobus veneficus SNP6]
 gi|327316597|gb|AEA47213.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Archaeoglobus veneficus SNP6]
          Length = 109

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGP-----RCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
            EE+CI C  CE  CP   I +            +  ++     ++   C  CG C   C
Sbjct: 32  DEEKCIGCGECETFCPDLCIELVEREGNNENSGENKKKKKKVAKVNYDYCKGCGTCSVVC 91

Query: 114 PVDAIVE 120
           P +AI  
Sbjct: 92  PAEAIRM 98



 Score = 33.9 bits (76), Expect = 7.8,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 14/36 (38%)

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           +   G        ID  KCI CG C+  CP   I  
Sbjct: 18  KIKTGDWGAEYPVIDEEKCIGCGECETFCPDLCIEL 53


>gi|313904957|ref|ZP_07838328.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eubacterium
           cellulosolvens 6]
 gi|313470214|gb|EFR65545.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eubacterium
           cellulosolvens 6]
          Length = 56

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 11/60 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C++C  CE  CP  AI+   G            + ID   C+ CG C+ ACP  AI E
Sbjct: 7   DDCVSCGTCEGECPVGAISQGDGK-----------FVIDADSCVDCGACEAACPTGAISE 55


>gi|301310929|ref|ZP_07216858.1| NADH dehydrogenase I, F subunit [Bacteroides sp. 20_3]
 gi|300830992|gb|EFK61633.1| NADH dehydrogenase I, F subunit [Bacteroides sp. 20_3]
          Length = 780

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 10/58 (17%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C+ C  C   CP+ AI      +            ID+ KC+ CGLC + C  DAI
Sbjct: 726 DDCVGCTKCSKACPSDAIPYTPYEKHS----------IDIEKCVLCGLCIDECSFDAI 773



 Score = 37.4 bits (85), Expect = 0.75,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%)

Query: 89  GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
           GT + +   +    C+ C  C +ACP DAI   P +E  +   ++   
Sbjct: 714 GTCKDMVRLMITDDCVGCTKCSKACPSDAIPYTP-YEKHSIDIEKCVL 760


>gi|297616548|ref|YP_003701707.1| aldo/keto reductase [Syntrophothermus lipocalidus DSM 12680]
 gi|297144385|gb|ADI01142.1| aldo/keto reductase [Syntrophothermus lipocalidus DSM 12680]
          Length = 321

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 11/58 (18%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           C  C  C   C  QA+ ++ G           R ++   KCI CG C   CP   I  
Sbjct: 274 CRGCGSCLEACRYQALELQEG-----------RVEVKKEKCILCGYCSRYCPDFCIKI 320


>gi|304316330|ref|YP_003851475.1| electron transport complex, RnfABCDGE type subunit beta
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302777832|gb|ADL68391.1| electron transport complex, RnfABCDGE type, B subunit
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 279

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 11/57 (19%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           CI CK CE  C   A+ +                 ID  KC+ C  C E CP D+I 
Sbjct: 221 CIGCKACERACNYDAVHVIDNLA-----------KIDYEKCVSCMACVEKCPTDSIY 266



 Score = 41.6 bits (96), Expect = 0.032,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 10/60 (16%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+    CE +CP  AI +                 +D  KC  CG+C +ACP + I    
Sbjct: 146 CLGLGTCEKLCPFDAIHVIGDGVAV----------VDEDKCTGCGICVDACPKNIIELVD 195



 Score = 33.5 bits (75), Expect = 9.6,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 7/71 (9%)

Query: 59  GEERCIACKLCEAICP------AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
            E++C  C +C   CP        A T       +    + VR    +  CI C  C+ A
Sbjct: 172 DEDKCTGCGICVDACPKNIIELVDANTKTRVICSNTDKGKNVRPVCTVG-CIGCKACERA 230

Query: 113 CPVDAIVEGPN 123
           C  DA+    N
Sbjct: 231 CNYDAVHVIDN 241


>gi|225019560|ref|ZP_03708752.1| hypothetical protein CLOSTMETH_03513 [Clostridium methylpentosum
           DSM 5476]
 gi|224947617|gb|EEG28826.1| hypothetical protein CLOSTMETH_03513 [Clostridium methylpentosum
           DSM 5476]
          Length = 591

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 11/63 (17%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           Y   ++RCI CK C       A+ +E G              I+   C  C +C + CP 
Sbjct: 533 YTVDKDRCIGCKKCIRELGCPALVLEGGKAA-----------IEPSLCYGCSICAQVCPC 581

Query: 116 DAI 118
            AI
Sbjct: 582 GAI 584


>gi|210621095|ref|ZP_03292458.1| hypothetical protein CLOHIR_00401 [Clostridium hiranonis DSM 13275]
 gi|210154916|gb|EEA85922.1| hypothetical protein CLOHIR_00401 [Clostridium hiranonis DSM 13275]
          Length = 305

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 12/58 (20%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           CI C  C + C A+AI  ++            +Y +D  KC  CG C   CP  A+  
Sbjct: 61  CIECGRCISACKAKAIDPKN------------KYWVDRTKCTLCGECALVCPSGALSM 106


>gi|157962175|ref|YP_001502209.1| electron transport complex protein RnfB [Shewanella pealeana ATCC
           700345]
 gi|189043389|sp|A8H537|RNFB_SHEPA RecName: Full=Electron transport complex protein rnfB
 gi|157847175|gb|ABV87674.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           pealeana ATCC 700345]
          Length = 189

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 23/66 (34%), Gaps = 10/66 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E+ CI C  C   CP  AI               + + +    C  C LC   CPVD
Sbjct: 108 YIREDECIGCTKCIQACPVDAILGSGK----------LMHTVITDYCTGCDLCVAPCPVD 157

Query: 117 AIVEGP 122
            I   P
Sbjct: 158 CIDMLP 163


>gi|146303092|ref|YP_001190408.1| pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta
           [Metallosphaera sedula DSM 5348]
 gi|145701342|gb|ABP94484.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Metallosphaera sedula DSM 5348]
          Length = 85

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 11/63 (17%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           +RCI C  C   CP   I             +  R +++   C  CG+C   CPV AI  
Sbjct: 33  DRCIGCNACYLWCPEGTI-----------GVKGKRAEVNYEYCKGCGVCANVCPVKAISM 81

Query: 121 GPN 123
              
Sbjct: 82  VTE 84


>gi|161525536|ref|YP_001580548.1| formate dehydrogenase subunit alpha [Burkholderia multivorans ATCC
           17616]
 gi|189349736|ref|YP_001945364.1| formate dehydrogenase subunit alpha [Burkholderia multivorans ATCC
           17616]
 gi|160342965|gb|ABX16051.1| formate dehydrogenase, alpha subunit [Burkholderia multivorans ATCC
           17616]
 gi|189333758|dbj|BAG42828.1| formate dehydrogenase alpha subunit [Burkholderia multivorans ATCC
           17616]
          Length = 983

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 23/78 (29%), Gaps = 3/78 (3%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIK 102
             R + +   +     +CI C  C   C     T     +                   +
Sbjct: 178 HDRKDESNPYFTYDPSKCIVCNRCVRACEETQGTFALTIAARGFESRVAAGESEPFMESE 237

Query: 103 CIYCGLCQEACPVDAIVE 120
           C+ CG C  ACP   + E
Sbjct: 238 CVSCGACVAACPTATLQE 255


>gi|20094675|ref|NP_614522.1| MinD family protein [Methanopyrus kandleri AV19]
 gi|19887839|gb|AAM02452.1| MinD superfamily P-loop ATPase containing an inserted ferredoxin
           domain [Methanopyrus kandleri AV19]
          Length = 259

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 23/68 (33%), Gaps = 19/68 (27%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           Y    + C+ C  C  +CP  A+                        C  CG+C  ACP 
Sbjct: 62  YAVKTDDCVECGRCSEVCPWDAVED-------------------PTACDGCGICAIACPE 102

Query: 116 DAIVEGPN 123
           DAI   P 
Sbjct: 103 DAIEFEPE 110



 Score = 34.3 bits (77), Expect = 6.0,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 15/49 (30%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +                      RY +    C+ CG C E CP DA+
Sbjct: 36  ADVTEPDVPAYLELEVEEVLEEIRARYAVKTDDCVECGRCSEVCPWDAV 84


>gi|118581916|ref|YP_903166.1| NADH dehydrogenase (quinone) [Pelobacter propionicus DSM 2379]
 gi|118504626|gb|ABL01109.1| NADH dehydrogenase subunit F [Pelobacter propionicus DSM 2379]
          Length = 488

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 10/58 (17%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           E C+ C LC  +CP   I+                + ID   CI CG C +AC   AI
Sbjct: 438 ESCVGCTLCSRVCPVNCISGT----------VKGVHVIDQAACIKCGACIDACKFQAI 485



 Score = 34.7 bits (78), Expect = 3.9,   Method: Composition-based stats.
 Identities = 9/43 (20%), Positives = 13/43 (30%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            +             +   I    C+ C LC   CPV+ I   
Sbjct: 416 HVVDKKCPAGVCVSLLEIVILAESCVGCTLCSRVCPVNCISGT 458


>gi|67597555|ref|XP_666154.1| RNase L inhibitor-like protein [Cryptosporidium hominis TU502]
 gi|54657090|gb|EAL35924.1| RNase L inhibitor-like protein [Cryptosporidium hominis]
          Length = 618

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 1/86 (1%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P +   +      E  LR      +RC   K C   C +    + +G  C +    +   
Sbjct: 3   PKKSTKSGGGDENESRLRIAIVEADRCKP-KNCRQECKSFCPVVRTGKLCVEVDSSSKIA 61

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGP 122
            I    CI CG+C + CP  AI    
Sbjct: 62  SISEPLCIGCGICVKKCPYSAITIIN 87


>gi|332560813|ref|ZP_08415131.1| electron transport complex protein rnfB [Rhodobacter sphaeroides
           WS8N]
 gi|332274611|gb|EGJ19927.1| electron transport complex protein rnfB [Rhodobacter sphaeroides
           WS8N]
          Length = 188

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 10/58 (17%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C  C  C   CP  AI   +             + +    CI C  C EACP +AI
Sbjct: 111 DHCTGCMRCFKRCPTDAIIGAN----------RQIHTVVTDACIGCNACIEACPTEAI 158


>gi|293370175|ref|ZP_06616735.1| ferredoxin [Bacteroides ovatus SD CMC 3f]
 gi|292634672|gb|EFF53201.1| ferredoxin [Bacteroides ovatus SD CMC 3f]
          Length = 304

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 9/65 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C+ C  C A C   AI +                ++D  KC  CG C +ACP   I
Sbjct: 138 CSYGCLGCGDCVAACQFDAIHMNPETGLP---------EVDEAKCTACGACVKACPKAII 188

Query: 119 VEGPN 123
              P 
Sbjct: 189 EIRPQ 193



 Score = 41.2 bits (95), Expect = 0.047,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 27/81 (33%), Gaps = 8/81 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------DMIKCIYCGLCQ 110
            E +C AC  C   CP   I I    +       +               + CI CG C 
Sbjct: 169 DEAKCTACGACVKACPKAIIEIRPQGKKSRRVYVSCVNKDKGAVARKACTVSCIGCGKCV 228

Query: 111 EACPVDAIVEGPNFEFATETR 131
           + CP +AI    N  +    +
Sbjct: 229 KTCPFEAITLENNLAYIDPNK 249



 Score = 40.9 bits (94), Expect = 0.057,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 11/62 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI C  C   CP +AIT+E+               ID  KC  C  C E CP ++I
Sbjct: 217 CTVSCIGCGKCVKTCPFEAITLENNLAY-----------IDPNKCKSCRKCVEVCPQNSI 265

Query: 119 VE 120
           +E
Sbjct: 266 IE 267


>gi|283955434|ref|ZP_06372932.1| iron-sulfur cluster binding protein [Campylobacter jejuni subsp.
           jejuni 414]
 gi|283793061|gb|EFC31832.1| iron-sulfur cluster binding protein [Campylobacter jejuni subsp.
           jejuni 414]
          Length = 479

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 22/89 (24%), Gaps = 10/89 (11%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-----QAITIESGPRCHDGTRR 92
                     R +           RCI C  C   CP            + P        
Sbjct: 287 EVHVILFDHNRSKMLAHEDYYEALRCIRCGACMNFCPVYDQIGGHAYQTTYPGPIGEVIS 346

Query: 93  TVRYDIDM-----IKCIYCGLCQEACPVD 116
              + ID        C  CG C E CPV 
Sbjct: 347 PNIFGIDHTGDILNFCSLCGRCSEVCPVQ 375


>gi|283955519|ref|ZP_06373014.1| iron-sulfur cluster binding protein [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283792980|gb|EFC31754.1| iron-sulfur cluster binding protein [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 479

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 22/89 (24%), Gaps = 10/89 (11%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-----QAITIESGPRCHDGTRR 92
                     R +           RCI C  C   CP            + P        
Sbjct: 287 EVHVILFDHNRSKMLAHEDYYEALRCIRCGACMNFCPVYDQIGGHAYQTTYPGPIGEVIS 346

Query: 93  TVRYDIDM-----IKCIYCGLCQEACPVD 116
              + ID        C  CG C E CPV 
Sbjct: 347 PNIFGIDHTGDILNFCSLCGRCSEVCPVQ 375


>gi|239904831|ref|YP_002951569.1| heterodisulfide reductase subunit A [Desulfovibrio magneticus RS-1]
 gi|239794694|dbj|BAH73683.1| heterodisulfide reductase subunit A [Desulfovibrio magneticus RS-1]
          Length = 652

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 7/64 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +RC+ C  C   CP +AI            R   + ++    C  CG+C   CP  AI
Sbjct: 580 DIKRCVGCGKCIMTCPFKAIK-------EVEFRGQKKAEVIETVCQGCGICTSTCPQGAI 632

Query: 119 VEGP 122
               
Sbjct: 633 QLSH 636



 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/98 (24%), Positives = 31/98 (31%), Gaps = 13/98 (13%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPA----QAITIESGP----RCHDGTRRTVRYD 97
            F+ +   R      E C  C  C   CP+     A   + GP              +  
Sbjct: 225 NFQVQVKKRATYVDWELCTGCGACMEKCPSKKNPDAFNEKIGPCTSINIPFPQAIPKKAV 284

Query: 98  IDMIKCI-----YCGLCQEACPVDAIVEGPNFEFATET 130
           ID   C       CG+C + CP  AI      E  TE 
Sbjct: 285 IDPSTCRQFVKGKCGVCAKVCPTKAIRYDMTDEIVTED 322



 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 3/34 (8%)

Query: 102 KCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
           +C+ CG C   CP  AI      EF  + + E+ 
Sbjct: 583 RCVGCGKCIMTCPFKAI---KEVEFRGQKKAEVI 613


>gi|198415496|ref|XP_002121964.1| PREDICTED: similar to ATP-binding cassette, sub-family E, member 1
           [Ciona intestinalis]
          Length = 600

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++C   K C   C      +  G  C + T  +    I    CI CG+C + CP +AI
Sbjct: 12  NNDKCKP-KRCRQECRKSCPVVRMGKLCIEVTPLSKLAWISEELCIGCGICVKKCPFEAI 70

Query: 119 VEGP 122
               
Sbjct: 71  SIIN 74


>gi|217979756|ref|YP_002363903.1| formate dehydrogenase, alpha subunit [Methylocella silvestris BL2]
 gi|217505132|gb|ACK52541.1| formate dehydrogenase, alpha subunit [Methylocella silvestris BL2]
          Length = 948

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 3/75 (4%)

Query: 55  RYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQE 111
            +     +CI C  C   C   Q     +      G+R     D      +C+ CG C +
Sbjct: 159 YFAYDPAKCIVCNRCVRACEEVQGTFALTIDGRGFGSRVAAGQDEPFLESECVSCGACVQ 218

Query: 112 ACPVDAIVEGPNFEF 126
           ACP   ++E    E 
Sbjct: 219 ACPTATLMEKSVIEI 233


>gi|218780444|ref|YP_002431762.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761828|gb|ACL04294.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 281

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 12/64 (18%)

Query: 59  GEERCIACKLCE-AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
            +E C+ C  C    C  +AI++  G              I+   C  CG C EACP +A
Sbjct: 200 NQEECVGCGTCVSKACILEAISLVDGKAV-----------INQANCRGCGRCAEACPTNA 248

Query: 118 IVEG 121
           I   
Sbjct: 249 ITLT 252


>gi|306521037|ref|ZP_07407384.1| pyruvate-flavodoxin oxidoreductase [Clostridium difficile
           QCD-32g58]
          Length = 1087

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 18/81 (22%)

Query: 61  ERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRYDID--MIKCI 104
           + CI C  C  ICP                A       +        ++Y I    + C 
Sbjct: 595 DNCIQCNQCSFICPHACIRPVLVTEEELANAPEGFEAKKALGKGLEGLKYRIQVSPLDCT 654

Query: 105 YCGLCQEACP--VDAIVEGPN 123
            CG C + CP    A+V  P 
Sbjct: 655 GCGNCADICPAKEKALVMKPI 675


>gi|126734202|ref|ZP_01749949.1| dihydroorotate dehydrogenase family protein, putative [Roseobacter
           sp. CCS2]
 gi|126717068|gb|EBA13932.1| dihydroorotate dehydrogenase family protein, putative [Roseobacter
           sp. CCS2]
          Length = 434

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 8/76 (10%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI C  C A C       E              + +   +C+ 
Sbjct: 330 QYLNLNYVAKAKINQDDCIKCGRCYAAC-------EDTSHQAIAMSDDRTFTVIDEECVA 382

Query: 106 CGLCQEACPV-DAIVE 120
           C LC + CPV D I+ 
Sbjct: 383 CNLCVDVCPVEDCIIM 398


>gi|118470937|ref|YP_884577.1| formate dehydrogenase, subunit alpha [Mycobacterium smegmatis str.
           MC2 155]
 gi|118172224|gb|ABK73120.1| formate dehydrogenase, alpha subunit [Mycobacterium smegmatis str.
           MC2 155]
          Length = 939

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 25/81 (30%), Gaps = 3/81 (3%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CIAC  C   C     T      G                  +C+ CG C +
Sbjct: 159 YFDFDPSKCIACSRCVRACGEIQGTFALTIEGRGFESKVSPGAGELFMDSECVSCGACVQ 218

Query: 112 ACPVDAIVEGPNFEFATETRQ 132
           ACP   + E    E    TR 
Sbjct: 219 ACPTATLQERSVVELGIPTRS 239


>gi|77465207|ref|YP_354710.1| electron transport complex protein rnfB [Rhodobacter sphaeroides
           2.4.1]
 gi|123757730|sp|Q3IXC5|RNFB_RHOS4 RecName: Full=Electron transport complex protein rnfB; AltName:
           Full=Nitrogen fixation protein rnfB
 gi|77389625|gb|ABA80809.1| Electron transport complex protein rnfB [Rhodobacter sphaeroides
           2.4.1]
          Length = 188

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 10/58 (17%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C  C  C   CP  AI   +             + +    CI C  C EACP +AI
Sbjct: 111 DHCTGCMRCFKRCPTDAIIGAN----------RQIHTVVTDACIGCNACIEACPTEAI 158


>gi|20089854|ref|NP_615929.1| coenzyme F420 hydrogenase, subunit gamma [Methanosarcina
           acetivorans C2A]
 gi|19914803|gb|AAM04409.1| coenzyme F420 hydrogenase, subunit gamma [Methanosarcina
           acetivorans C2A]
          Length = 262

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 32/85 (37%), Gaps = 13/85 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L      +  CI C  C A CP +AIT E G               D+  C+ CG C  A
Sbjct: 188 LMNDVINQGLCIGCGTCAASCPVRAITHEFGK-----------PQGDLNLCVKCGSCYGA 236

Query: 113 CPVDAIVEGPNFEFATETRQELYYD 137
           CP          EF  E+  EL  D
Sbjct: 237 CPRSFFNFDVIPEF--ESISELIAD 259


>gi|14520529|ref|NP_126004.1| polyferredoxin related [Pyrococcus abyssi GE5]
 gi|5457745|emb|CAB49235.1| Fe-S cluster-containing hydrogenase component, putative [Pyrococcus
           abyssi GE5]
          Length = 168

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/95 (27%), Positives = 33/95 (34%), Gaps = 10/95 (10%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
           Y  K   T +  F         R        P   +R I C  C+ ICP  AI +E+   
Sbjct: 7   YLRKGYITPDELFSIIPKPSEERLRQRPVAVPECPQR-IPCTPCKEICPTGAIKMENPND 65

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
                       +D  KCI C LC + CP  A   
Sbjct: 66  IPI---------VDYEKCIGCSLCVQVCPGLAFFM 91


>gi|298481058|ref|ZP_06999252.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           sp. D22]
 gi|295083949|emb|CBK65472.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           xylanisolvens XB1A]
 gi|298272632|gb|EFI14199.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           sp. D22]
          Length = 304

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 9/65 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C+ C  C A C   AI +                ++D  KC  CG C +ACP   I
Sbjct: 138 CSYGCLGCGDCVAACQFDAIHMNPETGLP---------EVDEAKCTACGACVKACPKAII 188

Query: 119 VEGPN 123
              P 
Sbjct: 189 EIRPQ 193



 Score = 41.2 bits (95), Expect = 0.051,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 29/81 (35%), Gaps = 8/81 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCH--------DGTRRTVRYDIDMIKCIYCGLCQ 110
            E +C AC  C   CP   I I    +          +  +  V      + CI CG C 
Sbjct: 169 DEAKCTACGACVKACPKAIIEIRPQGKKSRRVYISCVNKDKGAVARKACTVSCIGCGKCV 228

Query: 111 EACPVDAIVEGPNFEFATETR 131
           + CP +AI    N  +    +
Sbjct: 229 KTCPFEAITLENNLAYIDPNK 249



 Score = 40.9 bits (94), Expect = 0.058,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 11/62 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI C  C   CP +AIT+E+               ID  KC  C  C E CP ++I
Sbjct: 217 CTVSCIGCGKCVKTCPFEAITLENNLAY-----------IDPNKCKSCRKCVEVCPQNSI 265

Query: 119 VE 120
           +E
Sbjct: 266 IE 267


>gi|291558287|emb|CBL35404.1| dihydroorotate oxidase B, catalytic subunit [Eubacterium siraeum
           V10Sc8a]
          Length = 494

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 6/60 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            + +C+ C  C   C       ++G +  D      +      KC+ C LC   CPV+ I
Sbjct: 431 DKNKCVGCGRCYIAC------YDAGHQALDFDAEARKPVFLGSKCVGCHLCATVCPVNCI 484


>gi|269215415|ref|ZP_06159269.1| ferredoxin hydrogenase [Slackia exigua ATCC 700122]
 gi|269130902|gb|EEZ61977.1| ferredoxin hydrogenase [Slackia exigua ATCC 700122]
          Length = 573

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 3/63 (4%)

Query: 59  GEERCIACKLCEAIC---PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
              +CI C  C ++C      A+   +G   H          I    C  CG C   CP 
Sbjct: 142 DSSKCIKCMRCVSVCEKNQHCAVWDFTGTGPHMKVTVREGLPIADAGCSLCGQCITHCPT 201

Query: 116 DAI 118
            A+
Sbjct: 202 GAL 204


>gi|260174482|ref|ZP_05760894.1| ferredoxin [Bacteroides sp. D2]
 gi|315922749|ref|ZP_07918989.1| ferredoxin [Bacteroides sp. D2]
 gi|313696624|gb|EFS33459.1| ferredoxin [Bacteroides sp. D2]
          Length = 321

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 9/65 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C+ C  C A C   AI +                ++D  KC  CG C +ACP   I
Sbjct: 138 CSYGCLGCGDCVAACQFDAIHMNPETGLP---------EVDEAKCTACGACVKACPKAII 188

Query: 119 VEGPN 123
              P 
Sbjct: 189 EIRPQ 193



 Score = 40.9 bits (94), Expect = 0.054,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 8/76 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCH--------DGTRRTVRYDIDMIKCIYCGLCQ 110
            E +C AC  C   CP   I I    +          +  +  V      + CI CG C 
Sbjct: 169 DEAKCTACGACVKACPKAIIEIRPQGKKSRRVYISCVNKDKGAVARKACTVSCIGCGKCV 228

Query: 111 EACPVDAIVEGPNFEF 126
           + CP +AI    N  +
Sbjct: 229 KTCPFEAITLENNLAY 244



 Score = 40.5 bits (93), Expect = 0.082,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 11/62 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI C  C   CP +AIT+E+               ID  KC  C  C E CP + I
Sbjct: 217 CTVSCIGCGKCVKTCPFEAITLENNLAY-----------IDPHKCKSCRKCVEVCPQNTI 265

Query: 119 VE 120
           +E
Sbjct: 266 IE 267


>gi|261350276|ref|ZP_05975693.1| putative 4Fe-4S binding domain protein [Methanobrevibacter smithii
           DSM 2374]
 gi|288861060|gb|EFC93358.1| putative 4Fe-4S binding domain protein [Methanobrevibacter smithii
           DSM 2374]
          Length = 399

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNF-EFATETRQELY 135
           I   KCI CG C   CPVDA   G +F + A E   E  
Sbjct: 130 IYEEKCIQCGQCAFGCPVDAKWTGKHFVDIAIENGAEFI 168


>gi|239627654|ref|ZP_04670685.1| formate acetyltransferase activating enzyme [Clostridiales
           bacterium 1_7_47_FAA]
 gi|239517800|gb|EEQ57666.1| formate acetyltransferase activating enzyme [Clostridiales
           bacterium 1_7_47FAA]
          Length = 283

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 27/87 (31%), Gaps = 2/87 (2%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              RC+ C   E +     +        H G  R          C+ CG C  ACP + I
Sbjct: 30  CPLRCMWCHNPEGLSYKPQLMRSGNGCLHCGKCRDACS--HPDTCVLCGSCVRACPKNLI 87

Query: 119 VEGPNFEFATETRQELYYDKERLLNNG 145
                   A      L  DK+ L   G
Sbjct: 88  RICGEEVTAEWLAGHLLKDKDYLEQVG 114


>gi|222445156|ref|ZP_03607671.1| hypothetical protein METSMIALI_00777 [Methanobrevibacter smithii
           DSM 2375]
 gi|222434721|gb|EEE41886.1| hypothetical protein METSMIALI_00777 [Methanobrevibacter smithii
           DSM 2375]
          Length = 399

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 1/39 (2%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNF-EFATETRQELY 135
           I   KCI CG C   CPVDA   G +F + A E   E  
Sbjct: 130 IYEEKCIQCGQCAFGCPVDAKWTGKHFVDIAIENGAEFI 168


>gi|218184578|gb|EEC67005.1| hypothetical protein OsI_33716 [Oryza sativa Indica Group]
          Length = 555

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+RC     C   C      ++ G  C +   R+    I    CI CG+C + CP  AI
Sbjct: 14  DEDRCKP-NKCGQECRRSCPVVKIGKHCIEIGPRSKSALISEELCIGCGICVKKCPFGAI 72

Query: 119 VEGP 122
               
Sbjct: 73  TIIN 76


>gi|212704141|ref|ZP_03312269.1| hypothetical protein DESPIG_02196 [Desulfovibrio piger ATCC 29098]
 gi|212672501|gb|EEB32984.1| hypothetical protein DESPIG_02196 [Desulfovibrio piger ATCC 29098]
          Length = 257

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 20/67 (29%), Gaps = 7/67 (10%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
             +      C  C  C + C    I +      +    R          C++CG C   C
Sbjct: 1   MSFAVDISLCRHCGCCASGCVCGLIRLPESGVPYIEPSRQ-------DSCVHCGHCIAVC 53

Query: 114 PVDAIVE 120
           P  AI  
Sbjct: 54  PEGAIRL 60


>gi|254456592|ref|ZP_05070021.1| formate dehydrogenase, alpha subunit [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207083594|gb|EDZ61020.1| formate dehydrogenase, alpha subunit [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 922

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 26/87 (29%), Gaps = 6/87 (6%)

Query: 38  FEKGSTSPRFRGEHA---LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
             + ++  + +G              + CI C  C   C     +            R  
Sbjct: 132 DHRYNSPKQHKGIPRDTSHDYMRMNLDNCINCGRCVRACDEIQGSFVLTMSGRGFESRIT 191

Query: 95  RYDIDM---IKCIYCGLCQEACPVDAI 118
             +  M     C+ CG C   CP DAI
Sbjct: 192 TDNDMMFGDSSCVSCGACAHTCPTDAI 218


>gi|253701647|ref|YP_003022836.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           M21]
 gi|251776497|gb|ACT19078.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           M21]
          Length = 432

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 11/80 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              RC  C  C AICP  AI++   P    G+    +  ++   C+ CG+C   C   A+
Sbjct: 288 DPARCDGCGRCVAICPVDAISLVREPE---GSGMPAKARLNSELCLGCGVCARNCHTKAV 344

Query: 119 VEGPNFEFATETRQELYYDK 138
                     E R++     
Sbjct: 345 RL--------EAREKRILTP 356


>gi|320107666|ref|YP_004183256.1| NADH:ubiquinone oxidoreductase subunit G, iron-sulfur-binding
           protein [Terriglobus saanensis SP1PR4]
 gi|319926187|gb|ADV83262.1| NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding
           protein [Terriglobus saanensis SP1PR4]
          Length = 801

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 26/84 (30%), Gaps = 9/84 (10%)

Query: 44  SPRFRGEHAL-RRYPNGEERCIACKLCEAICPAQAITIESGPR--------CHDGTRRTV 94
               R E            RCI C  C  +C         G +          +      
Sbjct: 128 PKNHREEQKWSPTVYFDRPRCILCYRCVRMCGEGMDVFALGIQNRGSSAVIAPNIPMTQS 187

Query: 95  RYDIDMIKCIYCGLCQEACPVDAI 118
              +  + C  CG+C +ACPV A+
Sbjct: 188 DNGMQALDCEECGMCIDACPVGAL 211


>gi|307251697|ref|ZP_07533602.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306860894|gb|EFM92902.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 685

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 34/107 (31%), Gaps = 3/107 (2%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E  CI C  C   CP   +  +               +  +  CI CG+C   CP  
Sbjct: 379 PEPERSCIRCSSCSDACPVG-LLPQQLYWYARSEDHDKSKEYHLDACIECGVCAYVCP-S 436

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            I     F        E+    ++      R+E+   R +  +   R
Sbjct: 437 YIPLIQYFRQEKAKITEIEEKAKKAEEAKARFEAREAR-LQKEKDAR 482


>gi|302874559|ref|YP_003843192.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Clostridium
           cellulovorans 743B]
 gi|307690830|ref|ZP_07633276.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Clostridium
           cellulovorans 743B]
 gi|302577416|gb|ADL51428.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Clostridium
           cellulovorans 743B]
          Length = 1170

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 28/91 (30%), Gaps = 17/91 (18%)

Query: 51  HALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY 96
            A+       + CI C  C  +CP               +A                 + 
Sbjct: 678 IAINVPEWQIDNCIQCNQCSYVCPHAAIRPFLLDEEEVLKAPESFVSKAATGAKGLNFKI 737

Query: 97  DIDMIKCIYCGLCQEACP--VDAIVEGPNFE 125
            + +  C  CG C + CP    A++  P FE
Sbjct: 738 QLAVEDCSGCGNCAQVCPAKEKALIMKP-FE 767


>gi|302875113|ref|YP_003843746.1| hydrogenase, Fe-only [Clostridium cellulovorans 743B]
 gi|307690261|ref|ZP_07632707.1| hydrogenase, Fe-only [Clostridium cellulovorans 743B]
 gi|302577970|gb|ADL51982.1| hydrogenase, Fe-only [Clostridium cellulovorans 743B]
          Length = 579

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 14/93 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM---IKCIYCGLCQEACPV 115
             ++CI C+ C ++C          P             ++      C  CG C   CP 
Sbjct: 149 DVDKCILCRRCVSVCNNIQTIGVLSPVFRGFETIISTAFMEPLAETNCTNCGQCVAVCPT 208

Query: 116 DAIVEGPNFEFATETRQELYYDKERLLNNGDRW 148
            A+ E  +        ++  +D    L++ D++
Sbjct: 209 GALRETND--------EDRVWDA---LDDEDKY 230


>gi|229827832|ref|ZP_04453901.1| hypothetical protein GCWU000182_03224 [Abiotrophia defectiva ATCC
           49176]
 gi|229788031|gb|EEP24145.1| hypothetical protein GCWU000182_03224 [Abiotrophia defectiva ATCC
           49176]
          Length = 1179

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 27/81 (33%), Gaps = 15/81 (18%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCHDGTRRTVR 95
           RG        N ++ C+ C LC  +CP  AI              ES            +
Sbjct: 678 RGIAVEVPVWN-KDTCLQCNLCSYVCPHAAIRPAVMDEEEAAKAPESMKMVDMKGMPGKK 736

Query: 96  YDIDMI--KCIYCGLCQEACP 114
           + I +    C  CG C   CP
Sbjct: 737 FAITVSVLDCTGCGSCVNVCP 757


>gi|195058500|ref|XP_001995454.1| GH17755 [Drosophila grimshawi]
 gi|193896240|gb|EDV95106.1| GH17755 [Drosophila grimshawi]
          Length = 1033

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/83 (19%), Positives = 23/83 (27%), Gaps = 10/83 (12%)

Query: 59   GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP-VDA 117
             ++ CI C  C   C                  +          C  C LC   CP +D 
Sbjct: 949  NDDMCINCGKCYMTCA-------DSGYQAIEFDKNTHLPHVNDDCTGCTLCVSVCPIIDC 1001

Query: 118  IVEGPNFEFATETRQELYYDKER 140
            I   P        R     +K++
Sbjct: 1002 IRMEPKQIPHIIKRG--VEEKDK 1022


>gi|189485593|ref|YP_001956534.1| hypothetical protein TGRD_590 [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287552|dbj|BAG14073.1| conserved hypothetical protein [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 378

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 10/74 (13%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G+    +    E+ C+ C LC   CPA+AI        H          ID  KCI C  
Sbjct: 304 GKFLWVKADINEKICVKCMLCARACPAEAIRAAGNQYPH----------IDAEKCISCFC 353

Query: 109 CQEACPVDAIVEGP 122
           C E CP  A+    
Sbjct: 354 CHEMCPHKAVKFKK 367


>gi|229580878|ref|YP_002839277.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus Y.N.15.51]
 gi|228011594|gb|ACP47355.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus Y.N.15.51]
          Length = 398

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 5/78 (6%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
            +R    +    +     IAC  C+     Q     +  +   G  R     I   KCI 
Sbjct: 32  NWRSLIVMPYGESKTALSIACNHCDNPTCMQVCPANAIEKNEMGIVR-----IRDDKCIG 86

Query: 106 CGLCQEACPVDAIVEGPN 123
           CG C  ACP +A+     
Sbjct: 87  CGFCTWACPYEALKFNNE 104



 Score = 37.8 bits (86), Expect = 0.51,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 24/101 (23%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
             + P            ++ +      +++CI C  C   CP +A+   +          
Sbjct: 54  HCDNPTCMQVCPANAIEKNEMGIVRIRDDKCIGCGFCTWACPYEALKFNNEG-------- 105

Query: 93  TVRYDIDMIKCIYCGL----------CQEACPVDAIVEGPN 123
                  M KC +C            C EACP  A+  G  
Sbjct: 106 ------IMTKCNFCYARLAEGKGIPYCVEACPTGALAFGWI 140


>gi|150402634|ref|YP_001329928.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C7]
 gi|150033664|gb|ABR65777.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           maripaludis C7]
          Length = 252

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/87 (29%), Positives = 32/87 (36%), Gaps = 11/87 (12%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P              A        + CI C +C  ICP  AI  E G            
Sbjct: 174 CPKSSIKVENEMGEIPAENVISLNNDTCINCMVCSEICPVGAIVYEDG-----------S 222

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGP 122
             +D  KCI+CG C++ CPV AI   P
Sbjct: 223 MKLDDKKCIFCGKCEKNCPVSAIEIKP 249



 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 10/77 (12%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
             +  L+++   EE CI C +CE  CP  AI +E          +    DI++  C+ C 
Sbjct: 119 HRKIRLKKHELDEESCIKCGICERFCPTSAIKVE----------KRNSIDINLDLCMGCT 168

Query: 108 LCQEACPVDAIVEGPNF 124
            C++ CP  +I      
Sbjct: 169 ACEKVCPKSSIKVENEM 185



 Score = 41.2 bits (95), Expect = 0.053,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 9/82 (10%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
            E      +       R       +C+ C+LC  +CP QAIT  S              +
Sbjct: 23  EESVKKKLKDIIVPVERNLYVETNKCVRCELCYEVCPVQAITEPSVKNPA---------E 73

Query: 98  IDMIKCIYCGLCQEACPVDAIV 119
           I   KC+ C +C + CPV AI 
Sbjct: 74  IIPEKCVKCEICAKTCPVGAIN 95



 Score = 38.2 bits (87), Expect = 0.36,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 15/74 (20%)

Query: 60  EERCIACKLCEAICPAQAI---------------TIESGPRCHDGTRRTVRYDIDMIKCI 104
            E+C+ C++C   CP  AI                            R  ++++D   CI
Sbjct: 76  PEKCVKCEICAKTCPVGAINVLEGRAELKNDDVIYELKEIDVTHRKIRLKKHELDEESCI 135

Query: 105 YCGLCQEACPVDAI 118
            CG+C+  CP  AI
Sbjct: 136 KCGICERFCPTSAI 149


>gi|115718576|ref|XP_001203141.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
 gi|115774766|ref|XP_001182876.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
          Length = 586

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 22/56 (39%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           K C   C      +  G  C + T  +    I    CI CG+C + CP +AI    
Sbjct: 21  KKCRQECRKSCPVVRMGKLCIEVTPASKIAYISEQLCIGCGICVKKCPFEAIHIIN 76


>gi|49082640|gb|AAT50720.1| PA3490 [synthetic construct]
          Length = 189

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 25/70 (35%), Gaps = 10/70 (14%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           R     E  CI C  C   CP  AI   +           + + +   +C  C LC E C
Sbjct: 104 RVAYIREAECIGCTKCIQACPVDAIVGAA----------RLMHTVIADECTGCDLCLEPC 153

Query: 114 PVDAIVEGPN 123
           PVD I     
Sbjct: 154 PVDCIEMREI 163



 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 16/38 (42%)

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           E  P             I   +CI C  C +ACPVDAI
Sbjct: 91  EPEPLDAAEETPPRVAYIREAECIGCTKCIQACPVDAI 128


>gi|85857951|ref|YP_460153.1| pyruvate dehydrogenase (ferredoxin/flavodoxin-dependent)
           [Syntrophus aciditrophicus SB]
 gi|85721042|gb|ABC75985.1| pyruvate dehydrogenase (ferredoxin/flavodoxin-dependent)
           [Syntrophus aciditrophicus SB]
          Length = 1172

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 16/91 (17%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPR 85
             +TS   +   A+       E CI C  C  +CP               +A    +   
Sbjct: 664 PTATSQYEKRGVAIHVPEWIPENCIQCNQCSFVCPHASIRPVLVTEEELKEAPDYFTTLE 723

Query: 86  CHDGTRRTVRYDID--MIKCIYCGLCQEACP 114
                 + +R+ I    + C+ CG C + CP
Sbjct: 724 AQGKELKGLRFRIQVSPLDCVGCGNCADICP 754


>gi|302671382|ref|YP_003831342.1| electron transport complex RnfB [Butyrivibrio proteoclasticus B316]
 gi|302395855|gb|ADL34760.1| electron transport complex RnfB [Butyrivibrio proteoclasticus B316]
          Length = 266

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 11/84 (13%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P++   +      +         +  CIAC +CE  CPA AIT+E+             
Sbjct: 192 IPYDAQESVACKSQDMGKLVNGYCKVGCIACHICEKNCPAGAITVENNVAS--------- 242

Query: 96  YDIDMIKCIYCGLCQEACPVDAIV 119
             ID  KC +CG C   CP  AI 
Sbjct: 243 --IDQEKCTHCGTCVSKCPKKAIQ 264


>gi|304317659|ref|YP_003852804.1| pyruvate ferredoxin/flavodoxin oxidoreductase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
 gi|302779161|gb|ADL69720.1| pyruvate ferredoxin/flavodoxin oxidoreductase
           [Thermoanaerobacterium thermosaccharolyticum DSM 571]
          Length = 1175

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 28/84 (33%), Gaps = 18/84 (21%)

Query: 57  PNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRRTV-----------RYDIDM 100
               + CI C  C  +CP  AI       E      +G                R  + +
Sbjct: 683 EWQIDNCIQCNQCAYVCPHAAIRPFLLNEEEVKNAPEGFTSKKAIGKGLEGLNFRIQVSV 742

Query: 101 IKCIYCGLCQEACP--VDAIVEGP 122
           + C  CG+C   CP    A+V  P
Sbjct: 743 LDCTGCGVCANTCPSKEKALVMKP 766


>gi|296109959|ref|YP_003616908.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus infernus ME]
 gi|295434773|gb|ADG13944.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus infernus ME]
          Length = 365

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 34/90 (37%), Gaps = 9/90 (10%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P            +  ++ Y   EE CI C+ C  +C   AITI    +          
Sbjct: 245 CPTTAIRVRKEPIAKEKVKCYVVLEEDCIGCRACYKVCKFGAITISKKTKLPY------- 297

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
             I   KCI CGLC+  CPVD I      E
Sbjct: 298 --ILPDKCIVCGLCERECPVDTIKLVNIDE 325



 Score = 41.6 bits (96), Expect = 0.039,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 43/114 (37%), Gaps = 19/114 (16%)

Query: 9   SFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKL 68
           S  ++ E V      L              E     PRFR    + +YP    +CI+C+ 
Sbjct: 4   SIFYIYEIVKRIKRVL--------DAKTKKEDYEDKPRFRKVPPIVKYPE---KCISCEA 52

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+  CPA+AI +    +           +I++  CI C  C E CP   +    
Sbjct: 53  CKESCPAKAIEMVEREK--------KIPNIEVDSCIACLNCVEVCPTGVLELDK 98



 Score = 37.0 bits (84), Expect = 0.85,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 3/60 (5%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+ C  C  +CP  AI +   P   +   +   Y +    CI C  C + C   AI    
Sbjct: 235 CLNCFYCLEVCPTTAIRVRKEPIAKE---KVKCYVVLEEDCIGCRACYKVCKFGAITISK 291



 Score = 35.5 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 21/64 (32%), Gaps = 11/64 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
                    EE C  C  CE  CP   I                 Y ID+ +CI C  C 
Sbjct: 111 PKFHYLQIDEEVCANCGKCERACPIGVIHKTEKA-----------YKIDVERCITCKRCL 159

Query: 111 EACP 114
           E CP
Sbjct: 160 EVCP 163


>gi|298530405|ref|ZP_07017807.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509779|gb|EFI33683.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 280

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 7/76 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E+C+AC  C   CP Q   +                ++ + +C  CG C +ACP +A+
Sbjct: 118 DSEKCMACGYCVDACPFQHPEL-------SRFTYFSLRNVWINRCTACGACAQACPENAL 170

Query: 119 VEGPNFEFATETRQEL 134
             G   E     ++ L
Sbjct: 171 FFGFRNELMDMAKKRL 186



 Score = 33.9 bits (76), Expect = 8.1,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 24/80 (30%), Gaps = 6/80 (7%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK---CIYC--GLCQEA 112
               +CI C +CE  C       E         +      I + +   C+ C    C  A
Sbjct: 42  YDSIKCINCGICERTCERVNGLPEEHNVIRMSQKAAPGTPIHITRRHSCMQCIRPSCARA 101

Query: 113 CPVDAIVEGPNFEFATETRQ 132
           CP  A      F   +   +
Sbjct: 102 CPTGA-TYKDEFGLVSFDSE 120


>gi|126643933|ref|XP_001388150.1| RNase L inhibitor-like protein [Cryptosporidium parvum Iowa II]
 gi|126117227|gb|EAZ51327.1| RNase L inhibitor-like protein [Cryptosporidium parvum Iowa II]
          Length = 618

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 1/86 (1%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P +   +      E  LR      +RC   K C   C +    + +G  C +    +   
Sbjct: 3   PKKSTKSGGGDENESRLRIAIVEADRCKP-KNCRQECKSFCPVVRTGKLCVEVDSSSKIA 61

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGP 122
            I    CI CG+C + CP  AI    
Sbjct: 62  SISEPLCIGCGICVKKCPYSAITIIN 87


>gi|158520198|ref|YP_001528068.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfococcus oleovorans Hxd3]
 gi|158509024|gb|ABW65991.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus
           oleovorans Hxd3]
          Length = 355

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 10/63 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + C  C+ C   C   A+ ++                ++  +CI CGLC   CP +A+
Sbjct: 275 DRDACTGCETCVDRCQTNALAMDDDGLAV----------LNPDRCIGCGLCVITCPSEAL 324

Query: 119 VEG 121
              
Sbjct: 325 SLQ 327



 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 21/67 (31%), Gaps = 4/67 (5%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            N +  C  C  C  +   QAI     P     T      D     C  C  C + C  +
Sbjct: 237 QNPDGMCNCCGDCCGVL--QAINFHPKPAEAVSTNHYAVLD--RDACTGCETCVDRCQTN 292

Query: 117 AIVEGPN 123
           A+    +
Sbjct: 293 ALAMDDD 299


>gi|153951992|ref|YP_001397336.1| iron-sulfur cluster binding protein [Campylobacter jejuni subsp.
           doylei 269.97]
 gi|152939438|gb|ABS44179.1| iron-sulfur cluster binding protein [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 479

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 22/89 (24%), Gaps = 10/89 (11%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-----QAITIESGPRCHDGTRR 92
                     R +           RCI C  C   CP            + P        
Sbjct: 287 EVHVILFDHNRSKMLSHEDYYEALRCIRCGACMNFCPVYDQIGGHAYQTTYPGPIGEVIS 346

Query: 93  TVRYDIDM-----IKCIYCGLCQEACPVD 116
              + ID        C  CG C E CPV 
Sbjct: 347 PNIFGIDHTGDILNFCSLCGRCSEVCPVQ 375


>gi|91092422|ref|XP_968009.1| PREDICTED: similar to ribonuclease L inhibitor homolog [Tribolium
           castaneum]
 gi|270004744|gb|EFA01192.1| hypothetical protein TcasGA2_TC010519 [Tribolium castaneum]
          Length = 608

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 22/56 (39%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           K C   C      +  G  C + T  +    I    CI CG+C + CP +AI    
Sbjct: 27  KRCRQECKKSCPVVRMGKLCIEVTPNSKMAAISEELCIGCGICVKKCPFEAITIIN 82


>gi|52424976|ref|YP_088113.1| electron transport complex protein RnfB [Mannheimia
           succiniciproducens MBEL55E]
 gi|52307028|gb|AAU37528.1| unknown [Mannheimia succiniciproducens MBEL55E]
          Length = 196

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 21/64 (32%), Gaps = 10/64 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E+ CI C  C   CP  AI   +             + +    C  C LC   CP D
Sbjct: 107 FIHEDMCIGCTKCIQACPVDAIIGTNK----------SLHTVIPDLCTGCELCVAPCPTD 156

Query: 117 AIVE 120
            I  
Sbjct: 157 CIKM 160



 Score = 37.4 bits (85), Expect = 0.65,   Method: Composition-based stats.
 Identities = 12/25 (48%), Positives = 14/25 (56%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           I    CI C  C +ACPVDAI+   
Sbjct: 108 IHEDMCIGCTKCIQACPVDAIIGTN 132


>gi|20093031|ref|NP_619106.1| hypothetical protein MA4241 [Methanosarcina acetivorans C2A]
 gi|19918353|gb|AAM07586.1| hypothetical protein MA_4241 [Methanosarcina acetivorans C2A]
          Length = 310

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 22/70 (31%), Gaps = 14/70 (20%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L       E C  C +C  +C   A                  + I+   C  C +C  A
Sbjct: 58  LELASVDSELCTGCGICREVCRFGA--------------VLENFTINPYSCEGCAVCTVA 103

Query: 113 CPVDAIVEGP 122
           CP  A+   P
Sbjct: 104 CPEKAVCLTP 113


>gi|70939748|ref|XP_740377.1| RNAse L inhibitor protein [Plasmodium chabaudi chabaudi]
 gi|56518050|emb|CAH87759.1| RNAse L inhibitor protein, putative [Plasmodium chabaudi chabaudi]
          Length = 453

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 1/70 (1%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           LR      ++C   K C   C      +++G  C +    +    I  + CI CG+C + 
Sbjct: 20  LRIAIVSTDKCKP-KKCHLECKKNCPIVKTGKFCIEVDHSSKIAFISEMLCIGCGICVKK 78

Query: 113 CPVDAIVEGP 122
           CP  +I    
Sbjct: 79  CPFSSITIIN 88


>gi|329766586|ref|ZP_08258129.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329136841|gb|EGG41134.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 100

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 1/69 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+RCI C LC  IC      +        G +R   +     +CI  G C   CP  +I
Sbjct: 10  DEQRCIGCALCVEICTTLGPDVLRVKPVE-GWKRGKAFVFYPERCISDGACIGVCPTKSI 68

Query: 119 VEGPNFEFA 127
                  + 
Sbjct: 69  FWMRPMNYT 77


>gi|296132263|ref|YP_003639510.1| NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding
           protein [Thermincola sp. JR]
 gi|296030841|gb|ADG81609.1| NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding
           protein [Thermincola potens JR]
          Length = 310

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 3/77 (3%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY---DIDMI 101
             +R + +         +CI C  C A C A                +   +   D+   
Sbjct: 130 HAYRPDDSNPYIYRDLNKCILCGKCVATCNAVQERSVINFAYRGFNTKIATFLDTDLKDS 189

Query: 102 KCIYCGLCQEACPVDAI 118
           +C+YC  C   CPV AI
Sbjct: 190 ECVYCNRCVAVCPVGAI 206


>gi|289422898|ref|ZP_06424727.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Peptostreptococcus anaerobius 653-L]
 gi|289156685|gb|EFD05321.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Peptostreptococcus anaerobius 653-L]
          Length = 296

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 15/69 (21%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           + RY   +++CI C  C+ +C      +E               + + ++CI CG C+ A
Sbjct: 240 IFRYRLDKDKCINCGRCKKVCQMNINPVE---------------NCNHLECIRCGRCKNA 284

Query: 113 CPVDAIVEG 121
           CPVDAI  G
Sbjct: 285 CPVDAISCG 293


>gi|258514863|ref|YP_003191085.1| sulfite reductase, subunit C [Desulfotomaculum acetoxidans DSM 771]
 gi|257778568|gb|ACV62462.1| sulfite reductase, subunit C [Desulfotomaculum acetoxidans DSM 771]
          Length = 327

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 8/89 (8%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +      +  G   +       ERCI CK C + C        S       +    +
Sbjct: 149 CPNDCIKAHMQDVGIMGMVEPVYRRERCIGCKACVSNC--------SKVSAGALSFINYK 200

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
            + D  +CI CG C   CP  A V G N+
Sbjct: 201 VERDEKRCIGCGECILKCPSSAWVRGDNY 229


>gi|257063495|ref|YP_003143167.1| 4Fe-4S protein [Slackia heliotrinireducens DSM 20476]
 gi|256791148|gb|ACV21818.1| 4Fe-4S protein [Slackia heliotrinireducens DSM 20476]
          Length = 292

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 7/73 (9%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G   L       + CI+C LC+  C      +++               +    C+ CG 
Sbjct: 218 GAVGLLSVKIDHDACISCNLCKKACLCDPSILDAAVAGEAD-------RVASGDCMLCGK 270

Query: 109 CQEACPVDAIVEG 121
           C + CP DA+  G
Sbjct: 271 CVDHCPKDALKIG 283


>gi|220905128|ref|YP_002480440.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219869427|gb|ACL49762.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 351

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 11/69 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L      +E+C AC  C  +C  +AI I  G              I    C  CG C   
Sbjct: 57  LPVPELNKEKCTACGACGEMCAYKAIAILGGKPV-----------IFSDMCHGCGGCFAV 105

Query: 113 CPVDAIVEG 121
           CP  A+ EG
Sbjct: 106 CPSGALDEG 114


>gi|78222936|ref|YP_384683.1| aldo/keto reductase family oxidoreductase [Geobacter
           metallireducens GS-15]
 gi|78194191|gb|ABB31958.1| Oxidoreductase, aldo/keto reductase family [Geobacter
           metallireducens GS-15]
          Length = 316

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 11/58 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             C  C  C   C + A+T+ +G              +D   CI CG C  +CP   I
Sbjct: 267 NFCKGCGGCVEACASGALTVVNGKAV-----------LDEAACILCGYCAASCPEFII 313


>gi|114319379|ref|YP_741062.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alkalilimnicola ehrlichii MLHE-1]
 gi|114225773|gb|ABI55572.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Alkalilimnicola ehrlichii MLHE-1]
          Length = 428

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 7/72 (9%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
            + L       + C   ++C A+CP  A+                  D D + CI CGLC
Sbjct: 278 PNTLFPQAKISDACCNHRICAALCPTGALQPVEDEDGSG-------LDYDPLFCIRCGLC 330

Query: 110 QEACPVDAIVEG 121
           Q+ CP  AI   
Sbjct: 331 QQVCPEKAITIT 342



 Score = 38.9 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 22/88 (25%), Positives = 26/88 (29%), Gaps = 19/88 (21%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIA-------CKLCEAICPAQAITIESGPRCHDGTR 91
           E    S   R   A       E  C+        C+ C   CP  A+T         G  
Sbjct: 14  ESAEQSAWHRLSDAQPWLLWQENACLPARSPLSDCRACSQACPVDALTATPKGPQLTG-- 71

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIV 119
                      C+ CG C  ACP  AI 
Sbjct: 72  ----------DCVACGRCTAACPTGAIN 89


>gi|167037864|ref|YP_001665442.1| hydrogenase, Fe-only [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|320116281|ref|YP_004186440.1| hydrogenase, Fe-only [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
 gi|166856698|gb|ABY95106.1| hydrogenase, Fe-only [Thermoanaerobacter pseudethanolicus ATCC
           33223]
 gi|319929372|gb|ADV80057.1| hydrogenase, Fe-only [Thermoanaerobacter brockii subsp. finnii
           Ako-1]
          Length = 581

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 59  GEERCIACKLCEAIC-PAQAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPV 115
              +C+ C+ C A+C   Q +           T     +   +    CI CG C E CPV
Sbjct: 144 DPNKCVLCRRCVAVCSEVQNVFAIGMVNRGFKTMVAPSFGRSLKDSPCISCGQCIEVCPV 203

Query: 116 DAIVEGP 122
            AI E  
Sbjct: 204 GAIYEKD 210


>gi|229585998|ref|YP_002844500.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.16.27]
 gi|228021048|gb|ACP56455.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.16.27]
          Length = 398

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 5/78 (6%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
            +R    +    +     IAC  C+     Q     +  +   G  R     I   KCI 
Sbjct: 32  NWRSLIVMPYGESRTALSIACNHCDNPTCMQVCPANAIEKNEMGIVR-----IRDDKCIG 86

Query: 106 CGLCQEACPVDAIVEGPN 123
           CG C  ACP +A+     
Sbjct: 87  CGFCTWACPYEALKFNNE 104



 Score = 37.8 bits (86), Expect = 0.52,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 24/101 (23%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
             + P            ++ +      +++CI C  C   CP +A+   +          
Sbjct: 54  HCDNPTCMQVCPANAIEKNEMGIVRIRDDKCIGCGFCTWACPYEALKFNNEG-------- 105

Query: 93  TVRYDIDMIKCIYCGL----------CQEACPVDAIVEGPN 123
                  M KC +C            C EACP  A+  G  
Sbjct: 106 ------IMTKCNFCYARLAEGKGIPYCVEACPTGALAFGWI 140


>gi|170290904|ref|YP_001737720.1| 2-oxoacid:ferredoxin oxidoreductase, delta subunit [Candidatus
           Korarchaeum cryptofilum OPF8]
 gi|170174984|gb|ACB08037.1| 2-oxoacid:ferredoxin oxidoreductase, delta subunit [Candidatus
           Korarchaeum cryptofilum OPF8]
          Length = 89

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 10/66 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E +CI C LC   CP + I+                  ID+  C  CG+C + CP  AI
Sbjct: 33  NESKCIKCWLCWLYCPEEVISEGENGFPV----------IDLSYCKGCGVCADVCPAKAI 82

Query: 119 VEGPNF 124
                +
Sbjct: 83  EMVREY 88


>gi|187251479|ref|YP_001875961.1| putative Indolepyruvate ferredoxin oxidoreductase [Elusimicrobium
           minutum Pei191]
 gi|186971639|gb|ACC98624.1| Putative indolepyruvate ferredoxin oxidoreductase [Elusimicrobium
           minutum Pei191]
          Length = 56

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 11/65 (16%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
             +      CI C  CE  CP  AI+ + G R            ID   CI CG C  +C
Sbjct: 1   MAHKIDGAVCINCGACEGTCPVSAISEQDGKRV-----------IDPAVCIDCGACVSSC 49

Query: 114 PVDAI 118
           PV  I
Sbjct: 50  PVSCI 54


>gi|158522645|ref|YP_001530515.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfococcus oleovorans Hxd3]
 gi|158511471|gb|ABW68438.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus
           oleovorans Hxd3]
          Length = 392

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 11/62 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + C  C +C   C   AI ++                +D+ KCI CGLC   C   AI
Sbjct: 297 DNDACNGCGVCVRRCQMGAIEVKEKKAH-----------LDVGKCIGCGLCVTTCKTGAI 345

Query: 119 VE 120
             
Sbjct: 346 RL 347


>gi|311747837|ref|ZP_07721622.1| putative 4Fe-4S binding domain protein [Algoriphagus sp. PR1]
 gi|126575828|gb|EAZ80138.1| putative 4Fe-4S binding domain protein [Algoriphagus sp. PR1]
          Length = 514

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 10/67 (14%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R +   R   NG  +CI+C  C   C           R           +I    C+ CG
Sbjct: 427 RFKSRFRITTNG-GQCISCGNCSTYCEMGIDVRWYAQRGQ---------NIVRSSCVGCG 476

Query: 108 LCQEACP 114
           +C   CP
Sbjct: 477 VCSSVCP 483


>gi|160878248|ref|YP_001557216.1| hydrogenase, Fe-only [Clostridium phytofermentans ISDg]
 gi|160426914|gb|ABX40477.1| hydrogenase, Fe-only [Clostridium phytofermentans ISDg]
          Length = 567

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 20/64 (31%), Gaps = 5/64 (7%)

Query: 59  GEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
              +CI C  C  +C       AI   +               I    C+ CG C   CP
Sbjct: 142 DPGKCILCGDCVRMCNEIQNVGAIDF-AHRGAKMIVSPAFNKKIAETNCVNCGQCAAVCP 200

Query: 115 VDAI 118
             AI
Sbjct: 201 TAAI 204


>gi|90022046|ref|YP_527873.1| electron transport complex protein RnfC [Saccharophagus degradans
           2-40]
 gi|89951646|gb|ABD81661.1| serine/threonine protein kinase [Saccharophagus degradans 2-40]
          Length = 745

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 9/58 (15%)

Query: 61  ERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           + CI C +C   CPA    Q +   S    HD  +    +D     CI CG C   CP
Sbjct: 368 QACIRCGMCAEACPASLLPQQLFWYSQAEDHDRLKAHNLFD-----CIECGACSYVCP 420


>gi|57241957|ref|ZP_00369897.1| iron-sulfur cluster binding protein [Campylobacter upsaliensis
           RM3195]
 gi|57017149|gb|EAL53930.1| iron-sulfur cluster binding protein [Campylobacter upsaliensis
           RM3195]
          Length = 473

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 21/88 (23%), Gaps = 10/88 (11%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ----------AITIESGPRCH 87
                     R +    +      RCI C  C   CP                  G    
Sbjct: 283 EVHIVLFDHHRSDMLAHKDYYEALRCIRCGACMNFCPVYDKIGGHSYQTVYPGPIGEVIS 342

Query: 88  DGTRRTVRYDIDMIKCIYCGLCQEACPV 115
                  +    +  C  CG C E CPV
Sbjct: 343 PNLFGMDKTGDILNFCSLCGRCSEVCPV 370


>gi|117923998|ref|YP_864615.1| electron transport complex, RnfABCDGE type, C subunit
           [Magnetococcus sp. MC-1]
 gi|117607754|gb|ABK43209.1| electron transport complex, RnfABCDGE type, C subunit
           [Magnetococcus sp. MC-1]
          Length = 605

 Score = 44.3 bits (103), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 2/70 (2%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            N E  CI C  C  +CP   +  E         +     D D+  CI CG C   CP  
Sbjct: 368 DNPEGPCIRCAKCVNVCPMSLMPNEMA-WLAKNDQFDALADHDLFDCIECGTCSYVCP-S 425

Query: 117 AIVEGPNFEF 126
           +I     F +
Sbjct: 426 SIPLVHYFRY 435


>gi|295106347|emb|CBL03890.1| Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits
           [Gordonibacter pamelaeae 7-10-1-b]
          Length = 727

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 1/64 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + C  CK C        I  +   R      R   + +D   C  CGLC + CP  A+
Sbjct: 635 DADACTGCKKCITEIGCPGIGFDGDARGPKSKERGQAF-VDASLCNGCGLCTQVCPFGAL 693

Query: 119 VEGP 122
              P
Sbjct: 694 GVPP 697


>gi|268607923|ref|ZP_06141654.1| hydrogenase, Fe-only [Ruminococcus flavefaciens FD-1]
          Length = 582

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 16/95 (16%)

Query: 55  RYPNGEERCIACKLCEAIC-PAQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQE 111
                  +CI C+ C A+C   Q I +         T     +D+ + +  C+ CG C  
Sbjct: 143 HMYRDNNKCILCRRCVAVCAKTQGIGVIGANERGFKTYIGSAFDMGLGETSCVSCGQCIA 202

Query: 112 ACPVDAIVEGPNFEFATETRQELYYDKERLLNNGD 146
            CPV A+ E               Y KE +    D
Sbjct: 203 VCPVGALSEKD-------------YTKEVMAAIAD 224


>gi|259145334|emb|CAY78598.1| Rli1p [Saccharomyces cerevisiae EC1118]
          Length = 608

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP---N 123
           K C   C      +++G  C + T  +    I  I CI CG+C + CP DAI       N
Sbjct: 19  KKCRQECKRSCPVVKTGKLCIEVTPTSKIAFISEILCIGCGICVKKCPFDAIQIINLPTN 78

Query: 124 FEFATETR 131
            E     R
Sbjct: 79  LEAHVTHR 86


>gi|237795647|ref|YP_002863199.1| CobQ/CobB/MinD/ParA family protein [Clostridium botulinum Ba4 str.
           657]
 gi|229262837|gb|ACQ53870.1| CobQ/CobB/MinD/ParA family protein [Clostridium botulinum Ba4 str.
           657]
          Length = 281

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 15/67 (22%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              ++ CI C  C++IC   AI                 + ID   C  CG C   CP++
Sbjct: 61  NIDKDICIKCGKCKSICKFDAIEN---------------FKIDPFLCEGCGTCTLICPLN 105

Query: 117 AIVEGPN 123
           AI     
Sbjct: 106 AIKLEDE 112


>gi|256371676|ref|YP_003109500.1| protein of unknown function DUF224 cysteine-rich region domain
           protein [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008260|gb|ACU53827.1| protein of unknown function DUF224 cysteine-rich region domain
           protein [Acidimicrobium ferrooxidans DSM 10331]
          Length = 386

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 7/65 (10%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-------DIDMIKCIYCGLCQ 110
           +  + CI C LC+ +CP   +          G     R+       D    +C +C LC+
Sbjct: 11  DNADACIKCGLCQLVCPVLEVDPAFSGPKVLGPDWHRRFVAGERVTDDTAARCTFCQLCE 70

Query: 111 EACPV 115
             CPV
Sbjct: 71  SVCPV 75


>gi|227828791|ref|YP_002830571.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.14.25]
 gi|238620983|ref|YP_002915809.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.16.4]
 gi|227460587|gb|ACP39273.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.14.25]
 gi|238382053|gb|ACR43141.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus M.16.4]
          Length = 398

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 5/78 (6%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
            +R    +    +     IAC  C+     Q     +  +   G  R     I   KCI 
Sbjct: 32  NWRSLIVMPYGESKTALSIACNHCDNPTCMQVCPANAIEKNEMGIVR-----IRDDKCIG 86

Query: 106 CGLCQEACPVDAIVEGPN 123
           CG C  ACP +A+     
Sbjct: 87  CGFCTWACPYEALKFNNE 104



 Score = 37.8 bits (86), Expect = 0.51,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 24/101 (23%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
             + P            ++ +      +++CI C  C   CP +A+   +          
Sbjct: 54  HCDNPTCMQVCPANAIEKNEMGIVRIRDDKCIGCGFCTWACPYEALKFNNEG-------- 105

Query: 93  TVRYDIDMIKCIYCGL----------CQEACPVDAIVEGPN 123
                  M KC +C            C EACP  A+  G  
Sbjct: 106 ------IMTKCNFCYARLAEGKGIPYCVEACPTGALAFGWI 140


>gi|239624676|ref|ZP_04667707.1| nitroreductase family protein fused to ferredoxin domain
           [Clostridiales bacterium 1_7_47_FAA]
 gi|239521062|gb|EEQ60928.1| nitroreductase family protein fused to ferredoxin domain
           [Clostridiales bacterium 1_7_47FAA]
          Length = 266

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/109 (15%), Positives = 36/109 (33%), Gaps = 16/109 (14%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + C  C +C  +C    I +E       G +          +C+ C  C   CP
Sbjct: 1   MIHINRDLCTGCGVCVKVCSMACIVLEEEKAVFKGEK----------RCMTCAHCMAVCP 50

Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
             A+     ++ +    + +    +  L + +  ++ +V        YR
Sbjct: 51  QKAVC-TDRYDNS----ESVEMTPDIPLASPEEMKNRMVLRRSI-RAYR 93


>gi|168334532|ref|ZP_02692693.1| Anaerobic sulfite reduction protein C, reductase [Epulopiscium sp.
           'N.t. morphotype B']
          Length = 320

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 28/83 (33%), Gaps = 8/83 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +         G   +      + RC++C  C  +C  +++    G           R
Sbjct: 145 CPNDCAKARMNDFGIIGMTLPQFDKNRCVSCGACVRMCAKKSVKALEGINY--------R 196

Query: 96  YDIDMIKCIYCGLCQEACPVDAI 118
              +  KCI CG C   CP  A 
Sbjct: 197 PVRNHEKCIGCGECIVNCPTMAW 219


>gi|77164682|ref|YP_343207.1| electron transport complex, RnfABCDGE type, B subunit
           [Nitrosococcus oceani ATCC 19707]
 gi|254434195|ref|ZP_05047703.1| electron transport complex, RnfABCDGE type, B subunit subfamily
           [Nitrosococcus oceani AFC27]
 gi|76882996|gb|ABA57677.1| Electron transport complex, RnfABCDGE type, B subunit
           [Nitrosococcus oceani ATCC 19707]
 gi|207090528|gb|EDZ67799.1| electron transport complex, RnfABCDGE type, B subunit subfamily
           [Nitrosococcus oceani AFC27]
          Length = 209

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/84 (27%), Positives = 28/84 (33%), Gaps = 10/84 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           ++       R E         E RCI C LC   CP  AI                 + +
Sbjct: 88  QEPKPLDPERQEKLKALAVIDENRCIGCTLCIQACPVDAILGAPKQ----------LHTV 137

Query: 99  DMIKCIYCGLCQEACPVDAIVEGP 122
              +C  C LC   CPVD I   P
Sbjct: 138 ITAECTGCELCVAPCPVDCIEMVP 161


>gi|15893326|ref|NP_346675.1| hydrogene dehydrogenase [Clostridium acetobutylicum ATCC 824]
 gi|15022848|gb|AAK78015.1|AE007516_6 Hydrogene dehydrogenase [Clostridium acetobutylicum ATCC 824]
 gi|557064|gb|AAB03723.1| hydrogenase I [Clostridium acetobutylicum ATCC 824]
 gi|325507435|gb|ADZ19071.1| Hydrogene dehydrogenase [Clostridium acetobutylicum EA 2018]
          Length = 582

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 3/78 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPV 115
              +C+ C  C A C     T        DG R     D   +D   C+ CG C  ACPV
Sbjct: 142 DRSKCVLCGRCVAACKQHTSTCSIQFIKKDGQRAVGTVDDVCLDDSTCLLCGQCVIACPV 201

Query: 116 DAIVEGPNFEFATETRQE 133
            A+ E  + E   E   +
Sbjct: 202 AALKEKSHIEKVQEALND 219


>gi|6320296|ref|NP_010376.1| Rli1p [Saccharomyces cerevisiae S288c]
 gi|74676343|sp|Q03195|RLI1_YEAST RecName: Full=Translation initiation factor RLI1; AltName:
           Full=ATP-binding cassette sub-family E member RLI1;
           AltName: Full=RNase L inhibitor
 gi|914875|emb|CAA90450.1| unknown [Saccharomyces cerevisiae]
 gi|51830238|gb|AAU09693.1| YDR091C [Saccharomyces cerevisiae]
 gi|151942081|gb|EDN60437.1| RNAse L inhibitor [Saccharomyces cerevisiae YJM789]
 gi|190404942|gb|EDV08209.1| ATP-binding cassette sub-family E member 1 [Saccharomyces
           cerevisiae RM11-1a]
 gi|207346760|gb|EDZ73159.1| YDR091Cp-like protein [Saccharomyces cerevisiae AWRI1631]
 gi|256269844|gb|EEU05103.1| Rli1p [Saccharomyces cerevisiae JAY291]
 gi|285811114|tpg|DAA11938.1| TPA: Rli1p [Saccharomyces cerevisiae S288c]
 gi|323338297|gb|EGA79527.1| Rli1p [Saccharomyces cerevisiae Vin13]
          Length = 608

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP---N 123
           K C   C      +++G  C + T  +    I  I CI CG+C + CP DAI       N
Sbjct: 19  KKCRQECKRSCPVVKTGKLCIEVTPTSKIAFISEILCIGCGICVKKCPFDAIQIINLPTN 78

Query: 124 FEFATETR 131
            E     R
Sbjct: 79  LEAHVTHR 86


>gi|323704847|ref|ZP_08116424.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323535773|gb|EGB25547.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 372

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 11/59 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           ++C AC+ C   CP  AI++  G              ID  KCI CG C   C  DAI 
Sbjct: 193 KKCTACQTCIKNCPEDAISLVDGKAY-----------IDPEKCIGCGECITMCQYDAIN 240


>gi|322369578|ref|ZP_08044142.1| formate dehydrogenase, alpha subunit [Haladaptatus paucihalophilus
           DX253]
 gi|320550748|gb|EFW92398.1| formate dehydrogenase, alpha subunit [Haladaptatus paucihalophilus
           DX253]
          Length = 1095

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 4/69 (5%)

Query: 57  PNGEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
                +CI C  C   C        + IE   +      ++    +    C+ CG C   
Sbjct: 204 QIDRNKCILCNRCVEACNDVQVEGVLRIEGQGQDTRIGFQSDAETMSDSTCVSCGHCATV 263

Query: 113 CPVDAIVEG 121
           CP  ++VE 
Sbjct: 264 CPTGSLVEQ 272


>gi|310828880|ref|YP_003961237.1| hypothetical protein ELI_3312 [Eubacterium limosum KIST612]
 gi|308740614|gb|ADO38274.1| hypothetical protein ELI_3312 [Eubacterium limosum KIST612]
          Length = 383

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           ERC+ C +C A CP +   +         TR       +  KCI C  CQE CP  AI
Sbjct: 317 ERCVRCGICVASCPLEDKALTWKE-----TRNGRVPHYNYHKCIRCYCCQEMCPKKAI 369


>gi|256839685|ref|ZP_05545194.1| pyruvate formate-lyase 1-activating enzyme [Parabacteroides sp.
           D13]
 gi|256738615|gb|EEU51940.1| pyruvate formate-lyase 1-activating enzyme [Parabacteroides sp.
           D13]
          Length = 301

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 11/62 (17%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            ++CI C  C   CP  A+T+       D              C  CG C E CP  A+ 
Sbjct: 49  RKKCIGCGACVNACPTGALTLTEAGIVTD-----------RSLCRTCGRCAEVCPTLAME 97

Query: 120 EG 121
             
Sbjct: 98  MS 99


>gi|237712108|ref|ZP_04542589.1| ferredoxin [Bacteroides sp. 9_1_42FAA]
 gi|229453429|gb|EEO59150.1| ferredoxin [Bacteroides sp. 9_1_42FAA]
          Length = 315

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 27/76 (35%), Gaps = 8/76 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------DMIKCIYCGLCQ 110
            EE+C AC  C   CP + I I    + +                       CI CG C 
Sbjct: 172 DEEKCTACGACSKACPRKIIEIRPKGKNNRRVVVMCVNKDKGAVANKACKASCIGCGKCV 231

Query: 111 EACPVDAIVEGPNFEF 126
           + CP +AI    N  +
Sbjct: 232 KVCPFEAITLENNLAY 247



 Score = 40.9 bits (94), Expect = 0.059,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 9/60 (15%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+ C  C   C   AI +                ++D  KC  CG C +ACP   I   P
Sbjct: 145 CLGCGDCVEACQFDAIHMNPETGLP---------EVDEEKCTACGACSKACPRKIIEIRP 195



 Score = 38.9 bits (89), Expect = 0.20,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 11/61 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +  CI C  C  +CP +AIT+E+               ID  KC  C  C+  CP  AI
Sbjct: 220 CKASCIGCGKCVKVCPFEAITLENNLAY-----------IDPAKCKSCRKCESECPKGAI 268

Query: 119 V 119
            
Sbjct: 269 Q 269



 Score = 35.1 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 103 CIYCGLCQEACPVDAIVEGPN 123
           C+ CG C EAC  DAI   P 
Sbjct: 145 CLGCGDCVEACQFDAIHMNPE 165


>gi|227831524|ref|YP_002833304.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus L.S.2.15]
 gi|229580472|ref|YP_002838872.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus Y.G.57.14]
 gi|284999076|ref|YP_003420844.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Sulfolobus
           islandicus L.D.8.5]
 gi|227457972|gb|ACP36659.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus L.S.2.15]
 gi|228011188|gb|ACP46950.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus Y.G.57.14]
 gi|284446972|gb|ADB88474.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Sulfolobus
           islandicus L.D.8.5]
 gi|323475826|gb|ADX86432.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus REY15A]
 gi|323478601|gb|ADX83839.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus
           islandicus HVE10/4]
          Length = 398

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 5/78 (6%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
            +R    +    +     IAC  C+     Q     +  +   G  R     I   KCI 
Sbjct: 32  NWRSLIVMPYGESKTALSIACNHCDNPTCMQVCPANAIEKNEMGIVR-----IRDDKCIG 86

Query: 106 CGLCQEACPVDAIVEGPN 123
           CG C  ACP +A+     
Sbjct: 87  CGFCTWACPYEALKFNNE 104



 Score = 37.8 bits (86), Expect = 0.52,   Method: Composition-based stats.
 Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 24/101 (23%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
             + P            ++ +      +++CI C  C   CP +A+   +          
Sbjct: 54  HCDNPTCMQVCPANAIEKNEMGIVRIRDDKCIGCGFCTWACPYEALKFNNEG-------- 105

Query: 93  TVRYDIDMIKCIYCGL----------CQEACPVDAIVEGPN 123
                  M KC +C            C EACP  A+  G  
Sbjct: 106 ------IMTKCNFCYARLAEGKGIPYCVEACPTGALAFGWI 140


>gi|288549934|ref|ZP_05968681.2| putative polyferredoxin [Enterobacter cancerogenus ATCC 35316]
 gi|288317249|gb|EFC56187.1| putative polyferredoxin [Enterobacter cancerogenus ATCC 35316]
          Length = 290

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 11/64 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E+CI C  C   CP +AI  E                ++  +C  CG C+  CP  AI
Sbjct: 188 DTEKCILCGACWRSCPEKAIRFEDNALV-----------MENARCTGCGGCEAVCPSHAI 236

Query: 119 VEGP 122
              P
Sbjct: 237 KVMP 240



 Score = 41.6 bits (96), Expect = 0.040,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 11/53 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C  +CPAQA ++  G              ID  +CI CG C   CP DAI
Sbjct: 25  CHACADVCPAQAFSVTDGQV-----------TIDPSRCIECGDCLFVCPTDAI 66



 Score = 33.9 bits (76), Expect = 7.1,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 3/58 (5%)

Query: 69  CEAICPAQAITIESGPRC-HDGTRRTVRYDIDMI--KCIYCGLCQEACPVDAIVEGPN 123
                  +A T++ G R       R   +D+     KCI CG C  +CP  AI    N
Sbjct: 155 HAPREDVKACTVQPGKRQLRQAFPRFSEFDVIPDTEKCILCGACWRSCPEKAIRFEDN 212


>gi|212691452|ref|ZP_03299580.1| hypothetical protein BACDOR_00944 [Bacteroides dorei DSM 17855]
 gi|237726262|ref|ZP_04556743.1| ferredoxin [Bacteroides sp. D4]
 gi|212666062|gb|EEB26634.1| hypothetical protein BACDOR_00944 [Bacteroides dorei DSM 17855]
 gi|229434788|gb|EEO44865.1| ferredoxin [Bacteroides dorei 5_1_36/D4]
          Length = 315

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 27/76 (35%), Gaps = 8/76 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------DMIKCIYCGLCQ 110
            EE+C AC  C   CP + I I    + +                       CI CG C 
Sbjct: 172 DEEKCTACGACSKACPRKIIEIRPKGKNNRRVVVMCVNKDKGAVANKACKASCIGCGKCV 231

Query: 111 EACPVDAIVEGPNFEF 126
           + CP +AI    N  +
Sbjct: 232 KVCPFEAITLENNLAY 247



 Score = 41.2 bits (95), Expect = 0.050,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 9/60 (15%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+ C  C  +C   AI +                ++D  KC  CG C +ACP   I   P
Sbjct: 145 CLGCGDCVEVCQFDAIHMNPETGLP---------EVDEEKCTACGACSKACPRKIIEIRP 195



 Score = 38.9 bits (89), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 11/61 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +  CI C  C  +CP +AIT+E+               ID  KC  C  C+  CP  AI
Sbjct: 220 CKASCIGCGKCVKVCPFEAITLENNLAY-----------IDPAKCKSCRKCESECPKGAI 268

Query: 119 V 119
            
Sbjct: 269 Q 269



 Score = 35.5 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 11/21 (52%)

Query: 103 CIYCGLCQEACPVDAIVEGPN 123
           C+ CG C E C  DAI   P 
Sbjct: 145 CLGCGDCVEVCQFDAIHMNPE 165


>gi|194769374|ref|XP_001966779.1| GF19101 [Drosophila ananassae]
 gi|190618300|gb|EDV33824.1| GF19101 [Drosophila ananassae]
          Length = 1034

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 18/65 (27%), Gaps = 8/65 (12%)

Query: 59   GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP-VDA 117
             ++ CI C  C   C                  +          C  C LC   CP +D 
Sbjct: 952  NDDMCINCGKCYMTCA-------DSGYQAIEFDKETHIPHVNDDCTGCTLCVSVCPIIDC 1004

Query: 118  IVEGP 122
            I   P
Sbjct: 1005 ISMVP 1009


>gi|153954875|ref|YP_001395640.1| Fe-only hydrogenase 1 [Clostridium kluyveri DSM 555]
 gi|219855329|ref|YP_002472451.1| hypothetical protein CKR_1986 [Clostridium kluyveri NBRC 12016]
 gi|146347733|gb|EDK34269.1| Predicted Fe-only hydrogenase 1 [Clostridium kluyveri DSM 555]
 gi|219569053|dbj|BAH07037.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 580

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTR---RTVRYDIDMIKCIYCGLCQEACPV 115
              +CI C  C A C   + T        DG R          D   C+ CG C  ACPV
Sbjct: 141 DRTKCILCGRCVAACKVHSGTSVMQFIKKDGKRTVGIENNPCFDNSNCLLCGQCVIACPV 200

Query: 116 DAIVEGP 122
            A+ E P
Sbjct: 201 GALTEKP 207


>gi|57237082|ref|YP_178094.1| iron-sulfur cluster binding protein [Campylobacter jejuni RM1221]
 gi|57165886|gb|AAW34665.1| iron-sulfur cluster binding protein [Campylobacter jejuni RM1221]
 gi|315057515|gb|ADT71844.1| Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding
           subunit YkgF [Campylobacter jejuni subsp. jejuni S3]
          Length = 479

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 22/89 (24%), Gaps = 10/89 (11%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-----QAITIESGPRCHDGTRR 92
                     R +           RCI C  C   CP            + P        
Sbjct: 287 EVHVILFDHNRSKMLAHEDYYEALRCIRCGACMNFCPVYDQIGGHAYQTTYPGPIGEVIS 346

Query: 93  TVRYDIDM-----IKCIYCGLCQEACPVD 116
              + ID        C  CG C E CPV 
Sbjct: 347 PNIFGIDHTGDILNFCSLCGRCSEVCPVQ 375


>gi|73670092|ref|YP_306107.1| sulfite reductase subunit beta [Methanosarcina barkeri str. Fusaro]
 gi|72397254|gb|AAZ71527.1| sulfite reductase, beta subunit [Methanosarcina barkeri str.
           Fusaro]
          Length = 285

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/89 (28%), Positives = 28/89 (31%), Gaps = 11/89 (12%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
                  P           G          EE C+ CKLCE  C   AI +         
Sbjct: 135 KIAVTGCPAACVRPQENDFGIMGTVMPKIVEENCVGCKLCEKACKVGAIKVLEDKAS--- 191

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                   ID  KCI CG C  AC  DA+
Sbjct: 192 --------IDTEKCILCGACIAACRKDAL 212


>gi|94310165|ref|YP_583375.1| benzoyl-CoA oxygenase subunit A [Cupriavidus metallidurans CH34]
 gi|93354017|gb|ABF08106.1| Benzoyl-CoA oxygenase component A [Cupriavidus metallidurans CH34]
          Length = 415

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 11/67 (16%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            ++++    E CI C  CE  CP  AIT +              Y +    C  C  C  
Sbjct: 6   IIKQHLIDPEICIRCNTCEDTCPIDAITHDD-----------RNYVVKADVCNACNACLS 54

Query: 112 ACPVDAI 118
            CP  AI
Sbjct: 55  PCPTGAI 61



 Score = 34.3 bits (77), Expect = 5.3,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           ID   CI C  C++ CP+DAI    
Sbjct: 12  IDPEICIRCNTCEDTCPIDAITHDD 36


>gi|332797622|ref|YP_004459122.1| pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta
           [Acidianus hospitalis W1]
 gi|332695357|gb|AEE94824.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Acidianus hospitalis W1]
          Length = 86

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 27/75 (36%), Gaps = 10/75 (13%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G   L R      +C  C+LC   CP   I +  G              ID   C  CG+
Sbjct: 20  GHWRLMRPEIDYSKCTKCRLCVIYCPENTIDLLEGFDV----------RIDYDYCKGCGV 69

Query: 109 CQEACPVDAIVEGPN 123
           C + CP  AI   P 
Sbjct: 70  CAQICPQKAIQMVPE 84



 Score = 34.3 bits (77), Expect = 6.4,   Method: Composition-based stats.
 Identities = 14/37 (37%), Positives = 18/37 (48%)

Query: 89  GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           G  R +R +ID  KC  C LC   CP + I     F+
Sbjct: 20  GHWRLMRPEIDYSKCTKCRLCVIYCPENTIDLLEGFD 56


>gi|325299904|ref|YP_004259821.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides
           salanitronis DSM 18170]
 gi|324319457|gb|ADY37348.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides
           salanitronis DSM 18170]
          Length = 445

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 34/89 (38%), Gaps = 3/89 (3%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
              KA   I  P  KGS+      +   RR     + CI C  C ++CP           
Sbjct: 333 MMGKALMNIEVPICKGSSGVLIMNDKEARRGA--PQPCIRCAKCVSVCPMGLEPYLLATC 390

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
              G    V +++ M  CI CG CQ  CP
Sbjct: 391 SAHGDWERVEHEMIMS-CIECGSCQFTCP 418


>gi|319795633|ref|YP_004157273.1| 4fe-4S ferredoxin, iron-sulfur binding protein [Variovorax
           paradoxus EPS]
 gi|315598096|gb|ADU39162.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Variovorax
           paradoxus EPS]
          Length = 94

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 35/90 (38%), Gaps = 20/90 (22%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC------GLCQEACP 114
           + CI C +CE  CP  AI + +             Y+ID  KC  C        C + CP
Sbjct: 4   DECINCDVCEPECPNDAIYMGAE-----------YYEIDPHKCTECVGHFDEPQCVQICP 52

Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLNN 144
           V  I   P      E+R+ L    +RL   
Sbjct: 53  VACIPLNPEH---VESRETLMQKYQRLTAI 79


>gi|300856746|ref|YP_003781730.1| dihydropyrimidine dehydrogenase [Clostridium ljungdahlii DSM 13528]
 gi|300436861|gb|ADK16628.1| dihydropyrimidine dehydrogenase [Clostridium ljungdahlii DSM 13528]
          Length = 408

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/111 (15%), Positives = 32/111 (28%), Gaps = 7/111 (6%)

Query: 13  LKEFVGAFFLCLR-YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71
           +K+ +      +    F+    +     K   +        +      +  C+ C  C  
Sbjct: 291 IKDLISGLSYYMEDKKFEKVKDLVGLAVKNVVNADELERDYIIYPEFRDHNCVGCGRCYI 350

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            C         G +       + +  +   KC  C LC   CP   I+ G 
Sbjct: 351 SCFDG------GHQAIKWNYESRKPQLIEDKCEGCHLCANICPTGDILSGK 395


>gi|260888301|ref|ZP_05899564.1| conserved domain protein [Selenomonas sputigena ATCC 35185]
 gi|330838372|ref|YP_004412952.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Selenomonas sputigena ATCC 35185]
 gi|260861837|gb|EEX76337.1| conserved domain protein [Selenomonas sputigena ATCC 35185]
 gi|329746136|gb|AEB99492.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Selenomonas sputigena ATCC 35185]
          Length = 56

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 28/58 (48%), Gaps = 11/58 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           E CI+C  C   CP +AI+               +Y ID  KCI CG C E CPV AI
Sbjct: 7   EECISCGSCAGTCPVEAISEGE-----------SQYVIDEEKCIECGACAEGCPVSAI 53


>gi|255718765|ref|XP_002555663.1| KLTH0G14520p [Lachancea thermotolerans]
 gi|238937047|emb|CAR25226.1| KLTH0G14520p [Lachancea thermotolerans]
          Length = 608

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +++C   K C   C      +++G  C + T  +    I    CI CG+C + CP DAI
Sbjct: 12  NDDKCKP-KKCRQECKRSCPVVKTGKLCIEVTPTSKIAFISENLCIGCGICVKKCPFDAI 70

Query: 119 VEGP 122
               
Sbjct: 71  QIIN 74


>gi|221201244|ref|ZP_03574284.1| formate dehydrogenase, NAD-dependent, alpha subunit [Burkholderia
           multivorans CGD2M]
 gi|221206302|ref|ZP_03579315.1| formate dehydrogenase, NAD-dependent, alpha subunit [Burkholderia
           multivorans CGD2]
 gi|221173611|gb|EEE06045.1| formate dehydrogenase, NAD-dependent, alpha subunit [Burkholderia
           multivorans CGD2]
 gi|221179094|gb|EEE11501.1| formate dehydrogenase, NAD-dependent, alpha subunit [Burkholderia
           multivorans CGD2M]
          Length = 983

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 23/78 (29%), Gaps = 3/78 (3%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIK 102
             R + +   +     +CI C  C   C     T     +                   +
Sbjct: 178 HDRKDESNPYFTYDPSKCIVCNRCVRACEETQGTFALTIAARGFESRVAAGESEPFMESE 237

Query: 103 CIYCGLCQEACPVDAIVE 120
           C+ CG C  ACP   + E
Sbjct: 238 CVSCGACVAACPTATLQE 255


>gi|221213583|ref|ZP_03586557.1| formate dehydrogenase, NAD-dependent, alpha subunit [Burkholderia
           multivorans CGD1]
 gi|221166372|gb|EED98844.1| formate dehydrogenase, NAD-dependent, alpha subunit [Burkholderia
           multivorans CGD1]
          Length = 983

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/78 (19%), Positives = 23/78 (29%), Gaps = 3/78 (3%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIK 102
             R + +   +     +CI C  C   C     T     +                   +
Sbjct: 178 HDRKDESNPYFTYDPSKCIVCNRCVRACEETQGTFALTIAARGFESRVAAGESEPFMESE 237

Query: 103 CIYCGLCQEACPVDAIVE 120
           C+ CG C  ACP   + E
Sbjct: 238 CVSCGACVAACPTATLQE 255


>gi|160943092|ref|ZP_02090329.1| hypothetical protein FAEPRAM212_00571 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445561|gb|EDP22564.1| hypothetical protein FAEPRAM212_00571 [Faecalibacterium prausnitzii
           M21/2]
          Length = 294

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 15/67 (22%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L +      +C++C  C   C                    +    +  +CI CG+C +A
Sbjct: 227 LFQMRVDTHKCVSCGACAKACKMD---------------VDITKTPNHAECIRCGMCMKA 271

Query: 113 CPVDAIV 119
           CP DAI 
Sbjct: 272 CPTDAIQ 278


>gi|118444986|ref|YP_878968.1| pyruvate formate-lyase [Clostridium novyi NT]
 gi|118135442|gb|ABK62486.1| pyruvate formate-lyase [Clostridium novyi NT]
          Length = 299

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 23/60 (38%), Gaps = 12/60 (20%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             CI C  C   C   AI + +            R  ID  KCI CG C E C  +A+  
Sbjct: 52  RNCIQCGNCARACKVGAIDVIN------------RNGIDKNKCINCGKCVETCYANALNM 99


>gi|221066934|ref|ZP_03543039.1| electron transport complex, RnfABCDGE type, B subunit [Comamonas
           testosteroni KF-1]
 gi|220711957|gb|EED67325.1| electron transport complex, RnfABCDGE type, B subunit [Comamonas
           testosteroni KF-1]
          Length = 224

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 21/60 (35%), Gaps = 10/60 (16%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C LC   CP  AI   +             + +    C  C LC   CPVD I    
Sbjct: 94  CIGCTLCIKACPTDAILGANK----------RMHTVIADHCTGCELCIPVCPVDCIELIN 143



 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C LC +ACP DAI
Sbjct: 89  IDEAWCIGCTLCIKACPTDAI 109


>gi|157164373|ref|YP_001466147.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Campylobacter
           concisus 13826]
 gi|112800370|gb|EAT97714.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Campylobacter
           concisus 13826]
          Length = 1192

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 28/133 (21%), Positives = 46/133 (34%), Gaps = 30/133 (22%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ--------------AITIESG 83
           FE G+T+   RG   +      +  CI C  C  +CP                A      
Sbjct: 667 FEAGTTAYEKRGVGVMVPKWIEQN-CIQCNQCAFVCPHAVIRPFLIDENELSAAPQGVKE 725

Query: 84  PRCHDGTR--RTVRYDID--MIKCIYCGLCQEACP--VDAIVEGP--------NFEFATE 129
                  +  + ++Y I    + C  C LC + CP    ++V  P          E A  
Sbjct: 726 HNLEAKGKELKGLKYKIQVSPLDCTGCELCAQNCPSKEKSLVMVPLEEELGKNEQENADY 785

Query: 130 TRQELYYDKERLL 142
             +++ Y K+ L+
Sbjct: 786 LFKKVAY-KDDLM 797


>gi|58581545|ref|YP_200561.1| ferredoxin [Xanthomonas oryzae pv. oryzae KACC10331]
 gi|58426139|gb|AAW75176.1| ferredoxin II [Xanthomonas oryzae pv. oryzae KACC10331]
          Length = 156

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 27/85 (31%), Positives = 31/85 (36%), Gaps = 11/85 (12%)

Query: 39  EKGSTSPRFRGEHAL-RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
                  R RG H L +     E  CI C  C   CP  AI          G  + +   
Sbjct: 80  VPARPYDRSRGAHKLPQVAWIVEADCIGCTKCIHACPVDAIV---------GGAKHMHTV 130

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           I  + C  C LC  ACPVD I   P
Sbjct: 131 IAPL-CTGCELCLPACPVDCIELHP 154


>gi|121612415|ref|YP_999800.1| iron-sulfur cluster binding protein [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|167004775|ref|ZP_02270533.1| iron-sulfur cluster binding protein [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|205356453|ref|ZP_03223217.1| putative iron sulfur protein [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|87248973|gb|EAQ71935.1| iron-sulfur cluster binding protein [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|205345640|gb|EDZ32279.1| putative iron sulfur protein [Campylobacter jejuni subsp. jejuni
           CG8421]
          Length = 479

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 22/89 (24%), Gaps = 10/89 (11%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-----QAITIESGPRCHDGTRR 92
                     R +           RCI C  C   CP            + P        
Sbjct: 287 EVHVILFDHNRSKMLAHEDYYEALRCIRCGACMNFCPVYDQIGGHAYQTTYPGPIGEVIS 346

Query: 93  TVRYDIDM-----IKCIYCGLCQEACPVD 116
              + ID        C  CG C E CPV 
Sbjct: 347 PNIFGIDHTGDILNFCSLCGRCSEVCPVQ 375


>gi|325959022|ref|YP_004290488.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
 gi|325330454|gb|ADZ09516.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
          Length = 460

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 26/88 (29%), Gaps = 6/88 (6%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P+   +                  + C  C  C   C   +I + S             
Sbjct: 71  CPYNAINMKTTLSEPIRENVPNINTKLCRQCGACVKACKTGSIQLISSGNEE------AH 124

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPN 123
            +I+   C+ CG C   CP +AI  G  
Sbjct: 125 SEINEDTCVRCGYCARVCPTEAIKYGEI 152



 Score = 41.2 bits (95), Expect = 0.042,   Method: Composition-based stats.
 Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 11/71 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E C+AC +C   CP  A+ +E                +D  KCI CG C   CPV+AI
Sbjct: 397 DVEACMACGICVRKCPTNALKLEKDEVI-----------VDTEKCILCGECDIICPVNAI 445

Query: 119 VEGPNFEFATE 129
                   A+ 
Sbjct: 446 KLKTESNTAST 456



 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 11/64 (17%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C + CP + I +E                    +C++CG C E C  +AI  
Sbjct: 319 DNCIGCGACMSECPVKCIELE-----------MPSPVHIDDRCVHCGKCIETCQFNAIEL 367

Query: 121 GPNF 124
              +
Sbjct: 368 AEEY 371



 Score = 37.0 bits (84), Expect = 0.79,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 33/102 (32%), Gaps = 14/102 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++ CI C  C  +CP+            +  + +    I+   C  C  C   CP  AI
Sbjct: 166 NQKDCIGCMTCTKVCPS--------RGAINVGKVSKLPFINPSYCARCEECMNVCPSAAI 217

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDS 160
                  +++  R    + K + +             +  D+
Sbjct: 218 K------YSSRKRAYKNFSKIKTMEIVSELLENEAGKLSKDA 253



 Score = 37.0 bits (84), Expect = 0.80,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 13/69 (18%)

Query: 54  RRYPNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
             Y     +C AC  K C   CP  AI      +                KC+ C LC+E
Sbjct: 21  IDYNIDSSKCEACEDKPCLMSCPVDAIWKTEDGKIEI-----------DDKCVGCVLCRE 69

Query: 112 ACPVDAIVE 120
           ACP +AI  
Sbjct: 70  ACPYNAINM 78



 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ++C+ C LC   CP  AI +++         R    +I+   C  CG C +AC   +I  
Sbjct: 59  DKCVGCVLCREACPYNAINMKTTLSEPI---RENVPNINTKLCRQCGACVKACKTGSIQL 115


>gi|310658701|ref|YP_003936422.1| electron transport complex, rnfABCdge type subunit B [Clostridium
           sticklandii DSM 519]
 gi|308825479|emb|CBH21517.1| Electron transport complex, RnfABCDGE type, B subunit precursor
           [Clostridium sticklandii]
          Length = 325

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 10/66 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            +    C+    CE +CP  AI +      H          +D  KC+ CG C EACP  
Sbjct: 135 KSCSYGCLGFGTCENVCPFDAIHVYDDGIAH----------VDEEKCVGCGKCIEACPKA 184

Query: 117 AIVEGP 122
            I   P
Sbjct: 185 VIHWIP 190



 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 11/56 (19%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           CI C++C   CP QAIT E+               ID  KC  C +C E CP  AI
Sbjct: 216 CIGCQICVKSCPFQAITFENNLA-----------KIDYSKCTQCMVCVEKCPTKAI 260



 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 30/82 (36%), Gaps = 10/82 (12%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           EK  T          +     E+ CI C +C   CP  AI  E              + +
Sbjct: 253 EKCPTKAISGDLSKRKTARVIEDLCIGCTICAKNCPTNAIEGELK----------AIHKV 302

Query: 99  DMIKCIYCGLCQEACPVDAIVE 120
           D  KCI C +C + CP  AI  
Sbjct: 303 DPDKCIGCKVCYQKCPKKAIEM 324



 Score = 42.8 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 5/80 (6%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQE 111
              EE+C+ C  C   CP   I      +      +   +     +   + CI C +C +
Sbjct: 165 HVDEEKCVGCGKCIEACPKAVIHWIPYGQEVSIDCNSKEKGKDVKEKCSVGCIGCQICVK 224

Query: 112 ACPVDAIVEGPNFEFATETR 131
           +CP  AI    N      ++
Sbjct: 225 SCPFQAITFENNLAKIDYSK 244



 Score = 41.2 bits (95), Expect = 0.043,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 8/60 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              +C  C +C   CP +AI+ +   R            +    CI C +C + CP +AI
Sbjct: 241 DYSKCTQCMVCVEKCPTKAISGDLSKR--------KTARVIEDLCIGCTICAKNCPTNAI 292


>gi|303242615|ref|ZP_07329090.1| protein of unknown function DUF362 [Acetivibrio cellulolyticus CD2]
 gi|302589823|gb|EFL59596.1| protein of unknown function DUF362 [Acetivibrio cellulolyticus CD2]
          Length = 395

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 11/64 (17%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           +++CI C  C   CP                 +  + +  + KCI C  CQE CP  AI 
Sbjct: 320 QDKCIGCGDCMRSCP-----------PKVIQMKNKKPEAKLSKCIRCFCCQEMCPAKAIE 368

Query: 120 EGPN 123
              N
Sbjct: 369 IKRN 372


>gi|296132235|ref|YP_003639482.1| Glutamate synthase (NADPH) [Thermincola sp. JR]
 gi|296030813|gb|ADG81581.1| Glutamate synthase (NADPH) [Thermincola potens JR]
          Length = 500

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 9/60 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++CI C++CE  C  +  + ++                   KC+ C  C   CP  A+
Sbjct: 15  DIKKCINCRVCERQCANEVHSYDAEEDLMMAD---------DAKCVNCHRCVLLCPTRAL 65


>gi|197337509|ref|YP_002158626.1| pyruvate formate-lyase activating enzyme [Vibrio fischeri MJ11]
 gi|197314761|gb|ACH64210.1| pyruvate formate-lyase activating enzyme [Vibrio fischeri MJ11]
          Length = 303

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 19/60 (31%), Gaps = 8/60 (13%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
             P+    C  C  C   CP  A+T +  P              +   C  C  C + CP
Sbjct: 51  HNPHTINHCDHCGDCVVHCPTNALTFDDSPSPKVIW--------NEFLCTQCDQCIDVCP 102


>gi|145298168|ref|YP_001141009.1| pyruvate ferrodoxin/flavodoxin oxidoreductase [Aeromonas
           salmonicida subsp. salmonicida A449]
 gi|142850940|gb|ABO89261.1| pyruvate ferrodoxin/flavodoxin oxidoreductase [Aeromonas
           salmonicida subsp. salmonicida A449]
          Length = 1177

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 24/97 (24%), Gaps = 18/97 (18%)

Query: 36  YPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAIT 79
            P        +   +   A        + C  C  C A CP                A T
Sbjct: 661 SPDGTWPVGTTRWEKRNIAKEVPIWQADLCTRCNYCVAACPHSAIRAKVVDKASLTDAPT 720

Query: 80  IESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACP 114
                       R  +Y   +    C  C LC E CP
Sbjct: 721 TLDALDVKARDMRGQQYVLQVAPEDCTGCNLCVEVCP 757



 Score = 33.5 bits (75), Expect = 9.7,   Method: Composition-based stats.
 Identities = 8/20 (40%), Positives = 8/20 (40%)

Query: 99  DMIKCIYCGLCQEACPVDAI 118
               C  C  C  ACP  AI
Sbjct: 686 QADLCTRCNYCVAACPHSAI 705


>gi|158520765|ref|YP_001528635.1| proto-chlorophyllide reductase 57 kD subunit [Desulfococcus
           oleovorans Hxd3]
 gi|158509591|gb|ABW66558.1| Proto-chlorophyllide reductase 57 kD subunit [Desulfococcus
           oleovorans Hxd3]
          Length = 263

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 9/60 (15%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C  C  C A C   A+ ++             R  ID   C+ CG C +ACP   I EG
Sbjct: 146 DCTLCGACVAACRDPAVCLDEA---------NTRPVIDPGLCLACGACAKACPTGTITEG 196


>gi|160897304|ref|YP_001562886.1| formate dehydrogenase subunit alpha [Delftia acidovorans SPH-1]
 gi|160362888|gb|ABX34501.1| formate dehydrogenase, alpha subunit [Delftia acidovorans SPH-1]
          Length = 978

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 22/75 (29%), Gaps = 3/75 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     SG                   C+ CG C +
Sbjct: 164 YFSYDPSKCIVCNRCVRACEETQGTFALTISGRGFESRVTAGQGGSFMDSDCVSCGACVQ 223

Query: 112 ACPVDAIVEGPNFEF 126
           ACP   + E    E 
Sbjct: 224 ACPTATLQEKTVTEL 238


>gi|126179326|ref|YP_001047291.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit
           [Methanoculleus marisnigri JR1]
 gi|125862120|gb|ABN57309.1| formate dehydrogenase, beta subunit (F420) [Methanoculleus
           marisnigri JR1]
          Length = 383

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 22/67 (32%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R      +  +  E C  C          +  + SG    +      R+      CI CG
Sbjct: 286 RETGRCIKCYSCIENCPVCFPVADELKGNSRMVTSGEVPPNPMFHLRRFAHISDSCINCG 345

Query: 108 LCQEACP 114
            C+E CP
Sbjct: 346 QCEELCP 352


>gi|78042752|ref|YP_358967.1| iron-sulfur cluster-binding protein [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77994867|gb|ABB13766.1| iron-sulfur cluster-binding protein [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 375

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 3/61 (4%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            E+C  C  C   C   A+++        G  ++ +  ++  +CI CG+C   C  +A+ 
Sbjct: 291 PEKCSGCGNCVKKCQINALSLIE---TEPGNPKSKKAHVNKNRCIGCGVCVTFCKKEALT 347

Query: 120 E 120
            
Sbjct: 348 L 348


>gi|73670065|ref|YP_306080.1| CoB--CoM heterodisulfide reductase subunit A [Methanosarcina
           barkeri str. Fusaro]
 gi|72397227|gb|AAZ71500.1| CoB--CoM heterodisulfide reductase subunit A [Methanosarcina
           barkeri str. Fusaro]
          Length = 792

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/101 (22%), Positives = 30/101 (29%), Gaps = 11/101 (10%)

Query: 29  KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88
               T+    E    S      H              CK C  +C A        P  + 
Sbjct: 206 HPNITLYTYSEVTDISGSVGKFHVKVTRKPRFILEDKCKGCVDLCSAVCPVEIENPMNYG 265

Query: 89  GTRRTVRYD-----------IDMIKCIYCGLCQEACPVDAI 118
             +    Y            ID   C+ CGLC +ACP DA+
Sbjct: 266 VGKTRAIYMPIPQSVPQVVLIDPDHCVGCGLCLQACPADAV 306



 Score = 42.8 bits (99), Expect = 0.018,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 12/69 (17%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               E+CI C+ C  +C    I IE+               +D + C  CG C  ACP  
Sbjct: 574 HVDPEKCIGCRTCLEVCKFGKIKIENKKAV-----------VDEVSCYGCGDCSAACPAG 622

Query: 117 AIVEGPNFE 125
           AI    NFE
Sbjct: 623 AIQM-RNFE 630


>gi|83590140|ref|YP_430149.1| glutamate synthase (NADPH) GltB2 subunit [Moorella thermoacetica
           ATCC 39073]
 gi|83573054|gb|ABC19606.1| glutamate synthase (NADPH) GltB2 subunit [Moorella thermoacetica
           ATCC 39073]
          Length = 502

 Score = 43.9 bits (102), Expect = 0.006,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 22/65 (33%), Gaps = 9/65 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E +CI C  C   C   A   ++             Y ID   C+ C  C   CP  A+
Sbjct: 16  DENKCIKCLACVRQCGFDAQKYDAEDD--------RLYTID-ANCVNCQRCVSICPAGAL 66

Query: 119 VEGPN 123
               N
Sbjct: 67  TIYKN 71


>gi|325662233|ref|ZP_08150848.1| pyruvate:ferredoxin oxidoreductase [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331086025|ref|ZP_08335108.1| pyruvate:ferredoxin oxidoreductase [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325471485|gb|EGC74706.1| pyruvate:ferredoxin oxidoreductase [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330406948|gb|EGG86453.1| pyruvate:ferredoxin oxidoreductase [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 1180

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 17/69 (24%), Gaps = 14/69 (20%)

Query: 60  EERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
            E CI C  C  +CP               +A                    +    C  
Sbjct: 690 PENCIQCNRCAYVCPHAVIRPVALTEEELSKAPEGIETIDMIGMPGMKFTMTVSAYDCTG 749

Query: 106 CGLCQEACP 114
           CG C   CP
Sbjct: 750 CGSCANVCP 758


>gi|320537111|ref|ZP_08037084.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Treponema
           phagedenis F0421]
 gi|320146036|gb|EFW37679.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Treponema
           phagedenis F0421]
          Length = 1184

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 19/73 (26%), Gaps = 16/73 (21%)

Query: 58  NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRYDID--MI 101
              E CI C  C  +CP               +A                  + I     
Sbjct: 691 WDSEVCIQCGQCVMVCPHAVIRMKAYDKKELDKAPKEFKSCAYKGKEFENAAFTIQVSPE 750

Query: 102 KCIYCGLCQEACP 114
            C  C LC E CP
Sbjct: 751 DCTGCALCVEQCP 763



 Score = 37.0 bits (84), Expect = 0.91,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 6/32 (18%)

Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134
           CI CG C   CP   I            ++EL
Sbjct: 696 CIQCGQCVMVCPHAVIRMK------AYDKKEL 721


>gi|298675839|ref|YP_003727589.1| RnfABCDGE type electron transport complex subunit B
           [Methanohalobium evestigatum Z-7303]
 gi|298288827|gb|ADI74793.1| electron transport complex, RnfABCDGE type, B subunit
           [Methanohalobium evestigatum Z-7303]
          Length = 290

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 11/72 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI CK+CE  CP  AI + +              +ID  KC  CG+C E CP   I
Sbjct: 214 CTTGCIGCKICEKNCPEDAIKVNN-----------FLAEIDQEKCTACGICVEKCPQGTI 262

Query: 119 VEGPNFEFATET 130
                 E    +
Sbjct: 263 EMKETGEKTKTS 274



 Score = 38.9 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 22/67 (32%), Positives = 26/67 (38%), Gaps = 10/67 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C+    C   CP  AITI      H          I+   C  CGLC E+CP D +
Sbjct: 139 CSYGCMGRGTCVRACPFGAITIGEDRLPH----------INKNLCTSCGLCIESCPNDIL 188

Query: 119 VEGPNFE 125
           V G   E
Sbjct: 189 VFGKESE 195



 Score = 38.5 bits (88), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 5/67 (7%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCIYCGLCQE 111
              +  C +C LC   CP   +             R          +    CI C +C++
Sbjct: 167 HINKNLCTSCGLCIESCPNDILVFGKESEKVHVRCRSHDKPKAVKAVCTTGCIGCKICEK 226

Query: 112 ACPVDAI 118
            CP DAI
Sbjct: 227 NCPEDAI 233


>gi|296132534|ref|YP_003639781.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola
           sp. JR]
 gi|296031112|gb|ADG81880.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola
           potens JR]
          Length = 219

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 3/70 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY---DIDMIKCIYCGLCQEACPV 115
              RC+ C  C  +   +      G       R+   +    +   +C  CG C + CPV
Sbjct: 148 DPSRCVLCGQCVWVDRNKVKVGAIGFIKRGMDRKVSTFGEVKLAESRCTQCGECVKVCPV 207

Query: 116 DAIVEGPNFE 125
            A+      E
Sbjct: 208 GALTASSEKE 217


>gi|284161553|ref|YP_003400176.1| cobyrinic acid ac-diamide synthase [Archaeoglobus profundus DSM
           5631]
 gi|284011550|gb|ADB57503.1| Cobyrinic acid ac-diamide synthase [Archaeoglobus profundus DSM
           5631]
          Length = 277

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 11/74 (14%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
              +++    +++C  C LC  +C   AI +E+             Y +D+++C  C  C
Sbjct: 53  FKGMKKARIIQDKCERCGLCMDLCRFDAIYVEND-----------SYKVDIVRCEGCAFC 101

Query: 110 QEACPVDAIVEGPN 123
             ACP  AI     
Sbjct: 102 FRACPNKAIEMVSE 115



 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 21/64 (32%), Gaps = 4/64 (6%)

Query: 64  IACKLCEAICPAQAITIE----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
             CK   A C   A  +              +   +  I   KC  CGLC + C  DAI 
Sbjct: 23  TLCKGVIADCDVDAPNLHILLKPRILEEIPFKGMKKARIIQDKCERCGLCMDLCRFDAIY 82

Query: 120 EGPN 123
              +
Sbjct: 83  VEND 86


>gi|268323770|emb|CBH37358.1| probable F420H2-quinone oxidoreductase 39 kD subunit [uncultured
           archaeon]
          Length = 353

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 15/98 (15%)

Query: 20  FFLCLRY---FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
            ++ ++      + K  +  P +K      F    A+       + C  C  C ++CP  
Sbjct: 4   LYVTIKMAAAIGEYKWEVKVPEKKLKDKLYFENLKAVVVDT---KLCSRCLTCVSVCPGG 60

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
               E            V +     KC+ CG C   CP
Sbjct: 61  LTVSEED---------IVDFPDYETKCLDCGACVRVCP 89


>gi|265751809|ref|ZP_06087602.1| ferredoxin [Bacteroides sp. 3_1_33FAA]
 gi|263236601|gb|EEZ22071.1| ferredoxin [Bacteroides sp. 3_1_33FAA]
          Length = 309

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 26/76 (34%), Gaps = 8/76 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------DMIKCIYCGLCQ 110
            EE+C AC  C   CP + I I    +                         CI CG C 
Sbjct: 172 DEEKCTACGACSKACPRKIIEIRPKGKNSRRVVVMCVNKDKGAVANKACKASCIGCGKCV 231

Query: 111 EACPVDAIVEGPNFEF 126
           + CP +AI    N  +
Sbjct: 232 KVCPFEAITLENNLAY 247



 Score = 41.2 bits (95), Expect = 0.051,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 9/60 (15%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+ C  C  +C   AI +                ++D  KC  CG C +ACP   I   P
Sbjct: 145 CLGCGDCVEVCQFDAIHMNPETGLP---------EVDEEKCTACGACSKACPRKIIEIRP 195



 Score = 38.9 bits (89), Expect = 0.21,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 11/61 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +  CI C  C  +CP +AIT+E+               ID  KC  C  C+  CP  AI
Sbjct: 220 CKASCIGCGKCVKVCPFEAITLENNLAY-----------IDPAKCKSCRKCEPECPKGAI 268

Query: 119 V 119
            
Sbjct: 269 Q 269



 Score = 35.5 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 10/21 (47%), Positives = 11/21 (52%)

Query: 103 CIYCGLCQEACPVDAIVEGPN 123
           C+ CG C E C  DAI   P 
Sbjct: 145 CLGCGDCVEVCQFDAIHMNPE 165


>gi|238022534|ref|ZP_04602960.1| hypothetical protein GCWU000324_02442 [Kingella oralis ATCC 51147]
 gi|237867148|gb|EEP68190.1| hypothetical protein GCWU000324_02442 [Kingella oralis ATCC 51147]
          Length = 482

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 19/64 (29%), Gaps = 10/64 (15%)

Query: 62  RCIACKLCEAICPA-----QAITIES-----GPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           +CI C  C   CP       A    +     G           +       C  CG C E
Sbjct: 317 QCIRCGACMNHCPVYTRVGGAAYGTTYPGPIGEIISPHLMGLDKTRDLPTACTMCGACVE 376

Query: 112 ACPV 115
            CPV
Sbjct: 377 VCPV 380


>gi|224369388|ref|YP_002603552.1| 4Fe-4S ferredoxin, iron-sulfur cluster binding protein
           [Desulfobacterium autotrophicum HRM2]
 gi|223692105|gb|ACN15388.1| 4Fe-4S ferredoxin, iron-sulfur cluster binding protein
           [Desulfobacterium autotrophicum HRM2]
          Length = 519

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 7/50 (14%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           C  C  +CP  A+        H          +    CI CG CQ+ CPV
Sbjct: 436 CGACAEVCPTHAVYTIKENNVH-------HPRLAPDACIGCGACQQVCPV 478



 Score = 42.0 bits (97), Expect = 0.025,   Method: Composition-based stats.
 Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 13/73 (17%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
             AL R+   + RC  C  C+ +C A  I    G              ID  +C+ C  C
Sbjct: 225 RKALFRFSIDKTRCNGCAKCQRVCRAACIHPSLGE-------------IDGSRCVACFDC 271

Query: 110 QEACPVDAIVEGP 122
            + CP  AI   P
Sbjct: 272 MDVCPEQAIQYLP 284



 Score = 38.2 bits (87), Expect = 0.39,   Method: Composition-based stats.
 Identities = 17/105 (16%), Positives = 26/105 (24%), Gaps = 7/105 (6%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76
           +    + +   F+       P    S    F   +                 C  +CP  
Sbjct: 159 INNLMVAVTETFRPYLLSPSPSHTLSWP-LFMLAYVWLILVTTMAFFHGRLYCNTLCPVG 217

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           A             +   R+ ID  +C  C  CQ  C    I   
Sbjct: 218 AFF------SLFSRKALFRFSIDKTRCNGCAKCQRVCRAACIHPS 256



 Score = 37.8 bits (86), Expect = 0.47,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 4/62 (6%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACPVDAIVEG 121
           C  C  +CP+ AI   +           V ++    +       CG C E CP  A+   
Sbjct: 392 CNACTQVCPSGAIVPLALGVKQRTRIGHVVFEKNQCLVYTHKRDCGACAEVCPTHAVYTI 451

Query: 122 PN 123
             
Sbjct: 452 KE 453


>gi|206889393|ref|YP_002247876.1| indolepyruvate oxidoreductase subunit IorA [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206741331|gb|ACI20388.1| indolepyruvate oxidoreductase subunit IorA [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 596

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 9/58 (15%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           C  CKLC       AI  +            V+ +ID   C+ CG C   CP  AI  
Sbjct: 547 CKGCKLCLTEFECPAIVFKEED---------VKAEIDHTICVGCGCCVHICPTKAIRL 595


>gi|157363819|ref|YP_001470586.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermotoga lettingae TMO]
 gi|157314423|gb|ABV33522.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermotoga
           lettingae TMO]
          Length = 532

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 11/65 (16%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +    + +  C+ C  C   CP ++I+   G              I    CI CG+C E 
Sbjct: 1   MNAIVSNDASCMYCYKCLRNCPVKSISFNHGKA-----------KIIDEDCIQCGICIEV 49

Query: 113 CPVDA 117
           CP  A
Sbjct: 50  CPQKA 54


>gi|220928814|ref|YP_002505723.1| indolepyruvate ferredoxin oxidoreductase subunit alpha [Clostridium
           cellulolyticum H10]
 gi|219999142|gb|ACL75743.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Clostridium cellulolyticum H10]
          Length = 598

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 21/57 (36%), Gaps = 11/57 (19%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            C  CK C       AI++  G              I+   C  CGLC   CP DAI
Sbjct: 547 NCKDCKKCITEIGCPAISVIEGKV-----------RIEPSLCYGCGLCTNVCPFDAI 592


>gi|83311714|ref|YP_421978.1| electron transport complex protein rnfC [Magnetospirillum
           magneticum AMB-1]
 gi|82946555|dbj|BAE51419.1| Electron transport complex protein rnfC [Magnetospirillum
           magneticum AMB-1]
          Length = 498

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 2/72 (2%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            +    CI C  C   CP   + +E         +  +   I +  C+ CG C   CP  
Sbjct: 363 EHAPSPCIRCGSCVTYCPCGLVPVEMASYI-RNDKLDLAAKIGVQDCVSCGSCSYICPSH 421

Query: 117 AIVEGPNFEFAT 128
            I     F +A 
Sbjct: 422 -IPLVHFFNYAK 432



 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 4/37 (10%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
           +     CI CG C   CP   +      E A+  R +
Sbjct: 363 EHAPSPCIRCGSCVTYCPCGLVPV----EMASYIRND 395


>gi|119988|sp|P00198|FER_CLOAC RecName: Full=Ferredoxin
 gi|157831050|pdb|1FDN|A Chain A, Refined Crystal Structure Of The 2[4fe-4s] Ferredoxin From
           Clostridium Acidurici At 1.84 Angstroms Resolution
 gi|157834957|pdb|2FDN|A Chain A, 2[4fe-4s] Ferredoxin From Clostridium Acidi-Urici
          Length = 55

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 26/58 (44%), Gaps = 11/58 (18%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
            E CI+C  CE  CP  AI+               RY ID   CI CG C   CPVDA
Sbjct: 5   NEACISCGACEPECPVNAISSGDD-----------RYVIDADTCIDCGACAGVCPVDA 51


>gi|126464669|ref|YP_001045782.1| electron transport complex, RnfABCDGE type, B subunit [Rhodobacter
           sphaeroides ATCC 17029]
 gi|226735424|sp|A3PRP4|RNFB_RHOS1 RecName: Full=Electron transport complex protein rnfB; AltName:
           Full=Nitrogen fixation protein rnfB
 gi|126106480|gb|ABN79010.1| electron transport complex, RnfABCDGE type, B subunit [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 188

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 10/58 (17%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C  C  C   CP  AI   +             + +    CI C  C EACP +AI
Sbjct: 111 DHCTGCMRCFKRCPTDAIIGAN----------RQIHTVVTDACIGCNACIEACPTEAI 158


>gi|298674635|ref|YP_003726385.1| nitrite and sulphite reductase [Methanohalobium evestigatum Z-7303]
 gi|298287623|gb|ADI73589.1| nitrite and sulphite reductase 4Fe-4S region [Methanohalobium
           evestigatum Z-7303]
          Length = 623

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 11/74 (14%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
            RYP   + C  C  C  +C  +AI++           R      +   CI CG C +AC
Sbjct: 488 VRYPKVNDNCNGCGRCADVCKLEAISV-----------RGTTSYTNYNVCIGCGKCIKAC 536

Query: 114 PVDAIVEGPNFEFA 127
           P DA         A
Sbjct: 537 PNDARDIEKEGYMA 550



 Score = 35.5 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 18/56 (32%)

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
           +        P  HD     VRY      C  CG C + C ++AI       +    
Sbjct: 469 SGCPNKCVRPHIHDIGFYGVRYPKVNDNCNGCGRCADVCKLEAISVRGTTSYTNYN 524


>gi|295094175|emb|CBK83266.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta
           subunits [Coprococcus sp. ART55/1]
          Length = 56

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 11/60 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C   CP  AI+   G            + ID  +CI CG C  +CPV  I E
Sbjct: 7   DSCIGCGSCAGACPVGAISDNGG-----------VFVIDGSQCISCGACAGSCPVGTIAE 55


>gi|291548594|emb|CBL24856.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
           kD subunit (chain I) [Ruminococcus torques L2-14]
          Length = 56

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 11/66 (16%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + C++C  CE  CP  AI+   G            Y+ID   C+ CG C+ ACP
Sbjct: 1   MAHVISDECVSCGTCEGECPVGAISEGDGK-----------YEIDADACVDCGACEAACP 49

Query: 115 VDAIVE 120
             AI E
Sbjct: 50  TGAISE 55


>gi|258591530|emb|CBE67831.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           precursor [NC10 bacterium 'Dutch sediment']
          Length = 665

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 25/94 (26%), Gaps = 21/94 (22%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---------- 97
           R              CI C  C  +CP   + +    +       T   +          
Sbjct: 560 RCVRCGIHTIFDGTTCILCGGCVDVCPEYCLRMVPIDQLAGDDAVTSLVESLTGSPQSAT 619

Query: 98  -----------IDMIKCIYCGLCQEACPVDAIVE 120
                      +D  +CI C LC   CP  AI  
Sbjct: 620 PVAASAATAMLMDATRCIRCALCAMRCPTGAISM 653



 Score = 42.4 bits (98), Expect = 0.019,   Method: Composition-based stats.
 Identities = 11/53 (20%), Positives = 19/53 (35%)

Query: 78  ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
              ++  +     R  +    D   CI CG C + CP   +   P  + A + 
Sbjct: 550 PDTQAQAQAQRCVRCGIHTIFDGTTCILCGGCVDVCPEYCLRMVPIDQLAGDD 602


>gi|227498875|ref|ZP_03929015.1| electron transport complex protein [Acidaminococcus sp. D21]
 gi|226904327|gb|EEH90245.1| electron transport complex protein [Acidaminococcus sp. D21]
          Length = 447

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/114 (17%), Positives = 31/114 (27%), Gaps = 11/114 (9%)

Query: 16  FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
             G   +          +++YP  K S +       +          C+ C  C   CP 
Sbjct: 323 ISGGMMMGFS-----TPSLDYPIAKWSGAVLIFNSESPFAQYVEPSPCVHCARCVDACPM 377

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP-----VDAIVEGPNF 124
           + +      +                 C+ CG C   CP     V  I  G  F
Sbjct: 378 K-LEPTEIVQAVKRQNWEEAERFSCHACVECGSCAFVCPAHIPLVQYIRMGKQF 430


>gi|170698431|ref|ZP_02889504.1| formate dehydrogenase, alpha subunit [Burkholderia ambifaria
           IOP40-10]
 gi|170136684|gb|EDT04939.1| formate dehydrogenase, alpha subunit [Burkholderia ambifaria
           IOP40-10]
          Length = 983

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 23/76 (30%), Gaps = 3/76 (3%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCI 104
           R + +   +     +CI C  C   C     T     +                   +C+
Sbjct: 180 RKDESNPYFTYDPSKCIVCNRCVRACEETQGTFALTIAARGFESRVAAGESESFMESECV 239

Query: 105 YCGLCQEACPVDAIVE 120
            CG C  ACP   + E
Sbjct: 240 SCGACVAACPTATLQE 255


>gi|162446934|ref|YP_001620066.1| NADH oxidoreductase complex RnfABCDGE type, C subunit [Acholeplasma
           laidlawii PG-8A]
 gi|161985041|gb|ABX80690.1| NADH oxidoreductase complex RnfABCDGE type, C subunit [Acholeplasma
           laidlawii PG-8A]
          Length = 432

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 23/64 (35%), Gaps = 2/64 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ CI C  C   CP Q I             +     + + KCI CGLC   CP   I
Sbjct: 360 NEDPCIHCASCVYSCPVQ-IQPVQIMNAVKANDKDFLKALSVNKCIECGLCSFVCP-SKI 417

Query: 119 VEGP 122
               
Sbjct: 418 HLTD 421


>gi|160884258|ref|ZP_02065261.1| hypothetical protein BACOVA_02236 [Bacteroides ovatus ATCC 8483]
 gi|237719500|ref|ZP_04549981.1| ferredoxin [Bacteroides sp. 2_2_4]
 gi|156109997|gb|EDO11742.1| hypothetical protein BACOVA_02236 [Bacteroides ovatus ATCC 8483]
 gi|229451360|gb|EEO57151.1| ferredoxin [Bacteroides sp. 2_2_4]
          Length = 317

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 9/65 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C+ C  C A C   AI +                ++D  KC  CG C +ACP   I
Sbjct: 138 CSYGCLGCGDCVAACQFDAIHMNPETGLP---------EVDEAKCTACGACVKACPKAII 188

Query: 119 VEGPN 123
              P 
Sbjct: 189 EIRPQ 193



 Score = 40.9 bits (94), Expect = 0.059,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 8/76 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCH--------DGTRRTVRYDIDMIKCIYCGLCQ 110
            E +C AC  C   CP   I I    +          +  +  V      + CI CG C 
Sbjct: 169 DEAKCTACGACVKACPKAIIEIRPQGKKSRRVYISCVNKDKGAVARKACTVSCIGCGKCV 228

Query: 111 EACPVDAIVEGPNFEF 126
           + CP +AI    N  +
Sbjct: 229 KTCPFEAITLENNLAY 244



 Score = 40.1 bits (92), Expect = 0.091,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 11/62 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI C  C   CP +AIT+E+               ID  KC  C  C E CP + I
Sbjct: 217 CTVSCIGCGKCVKTCPFEAITLENNLAY-----------IDPHKCKSCRKCVEVCPQNTI 265

Query: 119 VE 120
           +E
Sbjct: 266 IE 267


>gi|153814133|ref|ZP_01966801.1| hypothetical protein RUMTOR_00342 [Ruminococcus torques ATCC 27756]
 gi|317499938|ref|ZP_07958174.1| hypothetical protein HMPREF1026_00116 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331087839|ref|ZP_08336764.1| hypothetical protein HMPREF1025_00347 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145848529|gb|EDK25447.1| hypothetical protein RUMTOR_00342 [Ruminococcus torques ATCC 27756]
 gi|316898655|gb|EFV20690.1| hypothetical protein HMPREF1026_00116 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330409534|gb|EGG88975.1| hypothetical protein HMPREF1025_00347 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 569

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 11/64 (17%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           +C  C  C   C  +AI+++                I +  CI CG C E CP +A    
Sbjct: 10  KCRHCYKCVRNCAVKAISVKDEQA-----------RIMVDHCINCGRCLEVCPQNAKTFA 58

Query: 122 PNFE 125
            + E
Sbjct: 59  SDLE 62


>gi|134045390|ref|YP_001096876.1| formylmethanofuran dehydrogenase subunit G [Methanococcus
           maripaludis C5]
 gi|132663015|gb|ABO34661.1| formylmethanofuran dehydrogenase, subunit G [Methanococcus
           maripaludis C5]
          Length = 80

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 26/67 (38%), Gaps = 8/67 (11%)

Query: 60  EERCIACKLCEAICPAQAITIE--------SGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            E+C  C  C   CP  A   +        S  +        V   ++   C  CG C E
Sbjct: 8   PEKCHGCGNCVVACPVNAQDPDVYGGKGPSSDEKLVMRVENGVVSIVNGDLCGGCGACIE 67

Query: 112 ACPVDAI 118
           ACPVDAI
Sbjct: 68  ACPVDAI 74



 Score = 33.9 bits (76), Expect = 7.4,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDA 117
             + ++   KC  CG C  ACPV+A
Sbjct: 1   MYKLEVYPEKCHGCGNCVVACPVNA 25


>gi|39995616|ref|NP_951567.1| Fe(III) reductase subunit alpha [Geobacter sulfurreducens PCA]
 gi|39982379|gb|AAR33840.1| Fe(III) reductase, alpha subunit [Geobacter sulfurreducens PCA]
 gi|298504638|gb|ADI83361.1| Fe(III) reductase, alpha subunit [Geobacter sulfurreducens KN400]
          Length = 844

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 22/66 (33%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            +   RCI C+ C  +                        D + + C +CG C  ACP  
Sbjct: 140 ESDPNRCILCEKCVKVDHEIVGCNAIRVVNRGEATIIDTVDGNPLNCEFCGNCVAACPTG 199

Query: 117 AIVEGP 122
            ++  P
Sbjct: 200 TLISKP 205


>gi|86151216|ref|ZP_01069431.1| iron-sulfur cluster binding protein [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|315123679|ref|YP_004065683.1| iron-sulfur cluster binding protein [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
 gi|85841563|gb|EAQ58810.1| iron-sulfur cluster binding protein [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|315017401|gb|ADT65494.1| iron-sulfur cluster binding protein [Campylobacter jejuni subsp.
           jejuni ICDCCJ07001]
          Length = 479

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 22/89 (24%), Gaps = 10/89 (11%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-----QAITIESGPRCHDGTRR 92
                     R +           RCI C  C   CP            + P        
Sbjct: 287 EVHVILFDHNRSKMLAHEDYYEALRCIRCGACMNFCPVYDQIGGHAYQTTYPGPIGEVIS 346

Query: 93  TVRYDIDM-----IKCIYCGLCQEACPVD 116
              + ID        C  CG C E CPV 
Sbjct: 347 PNIFGIDHTGDILNFCSLCGRCSEVCPVQ 375


>gi|311281329|ref|YP_003943560.1| glycyl-radical enzyme activating protein family [Enterobacter
           cloacae SCF1]
 gi|308750524|gb|ADO50276.1| glycyl-radical enzyme activating protein family [Enterobacter
           cloacae SCF1]
          Length = 301

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 12/73 (16%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            +C+ C+ C A+CP        G            ++ID   C  CG C E CP  A+  
Sbjct: 54  SKCVGCQRCAAVCPQGCHRFAQGK-----------HEIDFDACRACGRCVEVCPEQALKI 102

Query: 121 -GPNFEFATETRQ 132
            G ++E     R+
Sbjct: 103 YGRSYEVDELIRE 115


>gi|238919824|ref|YP_002933339.1| glutamate synthase family, small subunit, [Edwardsiella ictaluri
           93-146]
 gi|238869393|gb|ACR69104.1| glutamate synthase family, small subunit, putative [Edwardsiella
           ictaluri 93-146]
          Length = 678

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 23/73 (31%), Gaps = 13/73 (17%)

Query: 48  RGEHALRRYPNGEERCIACK--LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           R     R        C  C+   C  +CP  AI            +      +   KCI 
Sbjct: 41  RIHVIHRGDRRTALLCRHCEDAPCANVCPNGAIE-----------KYNDSIQVRQEKCIG 89

Query: 106 CGLCQEACPVDAI 118
           C  C  ACP  AI
Sbjct: 90  CKTCVVACPFGAI 102



 Score = 37.0 bits (84), Expect = 0.91,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 8/70 (11%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG------LCQEAC 113
           +E+CI CK C   CP  AI + +          +VR +    KC  C        C  AC
Sbjct: 84  QEKCIGCKTCVVACPFGAIEVITQSDPRSNHPDSVRANAH--KCDLCDGVADSPSCVAAC 141

Query: 114 PVDAIVEGPN 123
           P +A+     
Sbjct: 142 PSNALQLISE 151


>gi|239623493|ref|ZP_04666524.1| electron transport complex [Clostridiales bacterium 1_7_47_FAA]
 gi|239521524|gb|EEQ61390.1| electron transport complex [Clostridiales bacterium 1_7_47FAA]
          Length = 262

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 23/61 (37%), Gaps = 11/61 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C LC   C   AI +E                ID  KC  CG C E CPV  I
Sbjct: 213 CESGCIGCTLCTKQCEFDAIHMEDNLAV-----------IDYEKCTNCGKCAEKCPVKVI 261

Query: 119 V 119
            
Sbjct: 262 Q 262



 Score = 38.5 bits (88), Expect = 0.29,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 5/78 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCH-----DGTRRTVRYDIDMIKCIYCGLCQEAC 113
            +E+C+AC  C + CP   I +      H        +      +    CI C LC + C
Sbjct: 168 DKEKCVACGKCVSSCPNHLIELVPYKAGHLVQCSSHAKGKDVKSVCESGCIGCTLCTKQC 227

Query: 114 PVDAIVEGPNFEFATETR 131
             DAI    N       +
Sbjct: 228 EFDAIHMEDNLAVIDYEK 245


>gi|212223165|ref|YP_002306401.1| indolepyruvate: ferredoxin oxidoreductase, alpha subunit
           [Thermococcus onnurineus NA1]
 gi|212008122|gb|ACJ15504.1| indolepyruvate: ferredoxin oxidoreductase, alpha subunit
           [Thermococcus onnurineus NA1]
          Length = 638

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 9/60 (15%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E+C  CK C  +    A+  +             +  ID + C  CG+C + CP DAI  
Sbjct: 581 EKCTGCKACILLTGCPALVYDPDTN---------KVKIDELLCTGCGVCNQLCPFDAIKF 631


>gi|153952957|ref|YP_001393722.1| hypothetical protein CKL_0320 [Clostridium kluyveri DSM 555]
 gi|219853615|ref|YP_002470737.1| hypothetical protein CKR_0272 [Clostridium kluyveri NBRC 12016]
 gi|146345838|gb|EDK32374.1| Conserved hypothetical protein containing a ferredoxin domain
           [Clostridium kluyveri DSM 555]
 gi|219567339|dbj|BAH05323.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 253

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/89 (25%), Positives = 31/89 (34%), Gaps = 11/89 (12%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93
              P+     S R+        + N E+ CI C LCE  CP +AI + +G          
Sbjct: 161 RRAPYVVRIISDRYYENMRKTNHFNVEDSCIGCGLCEKKCPVEAIKMRNGKPVW------ 214

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                   +C  C  C   CP  AI    
Sbjct: 215 -----ITEQCAMCLGCLHRCPKFAIQYDD 238


>gi|120603320|ref|YP_967720.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio vulgaris DP4]
 gi|120563549|gb|ABM29293.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Desulfovibrio vulgaris DP4]
          Length = 170

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 20/65 (30%), Gaps = 13/65 (20%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI C  C   CP  A+ ++                     CI+CG C   CP + I
Sbjct: 82  DRSLCIRCGRCAEACPVDAVHMDGETGLPYV-------------CIHCGRCVAFCPHECI 128

Query: 119 VEGPN 123
                
Sbjct: 129 ELVDQ 133



 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           C  C+    AQA    +  +   G  +  R       CI CG C EACPVDA+     
Sbjct: 54  CLACDPAPCAQACPTGAYAQRKGGGVKVDR-----SLCIRCGRCAEACPVDAVHMDGE 106


>gi|15602250|ref|NP_245322.1| electron transport complex protein RnfC [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|17368785|sp|Q9CNP2|RNFC_PASMU RecName: Full=Electron transport complex protein rnfC
 gi|12720632|gb|AAK02469.1| unknown [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 835

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/103 (22%), Positives = 33/103 (32%), Gaps = 18/103 (17%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C   CP   +  +               +  +  CI CGLC   CP   I  
Sbjct: 375 QSCIRCSACSDACPVS-LMPQQLYWFARSEDHEKSEEYALKDCIECGLCAYVCPSH-IPL 432

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
              F      RQE    K ++      WE +       ++  R
Sbjct: 433 IQYF------RQE----KAKI------WEIQQKAKQAEEAKQR 459


>gi|154247407|ref|YP_001418365.1| formate dehydrogenase, alpha subunit [Xanthobacter autotrophicus
           Py2]
 gi|154161492|gb|ABS68708.1| formate dehydrogenase, alpha subunit [Xanthobacter autotrophicus
           Py2]
          Length = 946

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 3/77 (3%)

Query: 55  RYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDM--IKCIYCGLCQE 111
            +   + +CI C  C   C   Q     +      G+R +   D      +C+ CG C +
Sbjct: 159 YFTYEQSKCIVCNRCVRACEEVQGTFALTISGRGFGSRVSPGMDEPFLTSECVSCGACVQ 218

Query: 112 ACPVDAIVEGPNFEFAT 128
           ACP   + E   ++  T
Sbjct: 219 ACPTATLNEKAMYDIGT 235


>gi|116750928|ref|YP_847615.1| formate dehydrogenase subunit alpha [Syntrophobacter fumaroxidans
           MPOB]
 gi|116699992|gb|ABK19180.1| formate dehydrogenase, alpha subunit [Syntrophobacter fumaroxidans
           MPOB]
          Length = 905

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 3/71 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQE 111
                  +C+ C  C   C    +                 ++   +    C+ CG C +
Sbjct: 147 MIVRDHNKCVLCGRCVRACLQVQVNGAIDIAARGSDSYITTFNNTSLAESSCVSCGQCVQ 206

Query: 112 ACPVDAIVEGP 122
           ACPV A+ E  
Sbjct: 207 ACPVGALTEKK 217


>gi|95928880|ref|ZP_01311626.1| protein of unknown function DUF169 [Desulfuromonas acetoxidans DSM
           684]
 gi|95135225|gb|EAT16878.1| protein of unknown function DUF169 [Desulfuromonas acetoxidans DSM
           684]
          Length = 326

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 7/72 (9%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E+C  C +C   CP +        +      +     ++   C  C  C   CP +AI  
Sbjct: 9   EQCTGCGMCVNFCPVEVF------QLETSGEKNTVKVVNPSACWACDTCVGQCPTNAIRI 62

Query: 121 GPNFEFATETRQ 132
             + E A   R+
Sbjct: 63  IESAEEAA-DRE 73



 Score = 33.9 bits (76), Expect = 7.9,   Method: Composition-based stats.
 Identities = 8/24 (33%), Positives = 11/24 (45%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVE 120
            I   +C  CG+C   CPV+    
Sbjct: 5   QIATEQCTGCGMCVNFCPVEVFQL 28


>gi|332971139|gb|EGK10104.1| iron-sulfur cluster binding protein [Kingella kingae ATCC 23330]
          Length = 483

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 23/82 (28%), Gaps = 14/82 (17%)

Query: 62  RCIACKLCEAICPA-----QAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQE 111
           +CI C  C   CP       A    + P                       C  CG C E
Sbjct: 317 QCIRCGACMNHCPVYTRIGGAAYGTTYPGPIGEILSPHLLGLETTRDLPTACTMCGACVE 376

Query: 112 ACPVDAIVEGPNFEFATETRQE 133
            CPV      P  E     R+E
Sbjct: 377 VCPVKI----PITEQMQRLREE 394


>gi|324505057|gb|ADY42177.1| ATP-binding cassette sub-family E member 1 [Ascaris suum]
          Length = 609

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 22/56 (39%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           K C   C      +  G +C      +   +I    CI CG+C + CP DAI    
Sbjct: 27  KNCGLACKKSCPVVRMGKQCIVVETNSKMAEISETLCIGCGICVKKCPYDAIKIIN 82


>gi|307243715|ref|ZP_07525855.1| 4Fe-4S binding domain protein [Peptostreptococcus stomatis DSM
           17678]
 gi|306492924|gb|EFM64937.1| 4Fe-4S binding domain protein [Peptostreptococcus stomatis DSM
           17678]
          Length = 296

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 15/66 (22%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           Y   +++CI+C  C+ +C      +E               + + ++CI CG C+ ACPV
Sbjct: 243 YRLDKDKCISCGRCKKVCQMNIDPVE---------------NCNHLECIRCGRCKNACPV 287

Query: 116 DAIVEG 121
           DAI  G
Sbjct: 288 DAISCG 293


>gi|311232944|gb|ADP85798.1| iron-sulfur cluster-binding protein [Desulfovibrio vulgaris RCH1]
          Length = 170

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 20/65 (30%), Gaps = 13/65 (20%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI C  C   CP  A+ ++                     CI+CG C   CP + I
Sbjct: 82  DRSLCIRCGRCAEACPVDAVHMDGETGLPYV-------------CIHCGRCVAFCPHECI 128

Query: 119 VEGPN 123
                
Sbjct: 129 ELVDQ 133



 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           C  C+    AQA    +  +   G  +  R       CI CG C EACPVDA+     
Sbjct: 54  CLACDPAPCAQACPTGAYAQRKGGGVKVDR-----SLCIRCGRCAEACPVDAVHMDGE 106


>gi|255691579|ref|ZP_05415254.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           finegoldii DSM 17565]
 gi|260622788|gb|EEX45659.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           finegoldii DSM 17565]
          Length = 300

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 9/65 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C+ C  C A C   AI +                ++D  KC  CG C +ACP   I
Sbjct: 138 CSYGCLGCGDCVAACQFDAIHMNPETGLP---------EVDETKCTACGACVKACPKAII 188

Query: 119 VEGPN 123
              P 
Sbjct: 189 EIRPQ 193



 Score = 41.2 bits (95), Expect = 0.047,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 27/81 (33%), Gaps = 8/81 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------DMIKCIYCGLCQ 110
            E +C AC  C   CP   I I    +       +               + CI CG C 
Sbjct: 169 DETKCTACGACVKACPKAIIEIRPQGKKSRRVYVSCVNKDKGAVARKACTVSCIGCGKCV 228

Query: 111 EACPVDAIVEGPNFEFATETR 131
           + CP +AI    N  +    +
Sbjct: 229 KTCPFEAITLENNLAYIDPNK 249



 Score = 40.9 bits (94), Expect = 0.064,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 11/62 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI C  C   CP +AIT+E+               ID  KC  C  C E CP ++I
Sbjct: 217 CTVSCIGCGKCVKTCPFEAITLENNLAY-----------IDPNKCKSCRKCVEVCPQNSI 265

Query: 119 VE 120
           +E
Sbjct: 266 IE 267


>gi|224826604|ref|ZP_03699705.1| formate dehydrogenase, alpha subunit [Lutiella nitroferrum 2002]
 gi|224601205|gb|EEG07387.1| formate dehydrogenase, alpha subunit [Lutiella nitroferrum 2002]
          Length = 885

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 29/86 (33%), Gaps = 12/86 (13%)

Query: 59  GEERCIACKLCEAICP-------AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
              RCI C+ C  IC         +A    +  R            +    C+ CG C +
Sbjct: 137 DMTRCIDCQRCVRICEQLQGQFVWEAWHRGAALRIAPAHGA----TLLEGGCVSCGACVD 192

Query: 112 ACPVDAIVEGPN-FEFATETRQELYY 136
           +CP  A+ +     E    TR    Y
Sbjct: 193 SCPSGALYDKRVTVEVEGWTRTTCVY 218


>gi|224369477|ref|YP_002603641.1| RnfB [Desulfobacterium autotrophicum HRM2]
 gi|223692194|gb|ACN15477.1| RnfB [Desulfobacterium autotrophicum HRM2]
          Length = 273

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 22/64 (34%), Gaps = 11/64 (17%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+    C   C   AI +E G              ++   CI CG C +ACP   I    
Sbjct: 142 CLGFGDCVEACKYDAIHVEDGLAV-----------VNYDHCIGCGACVKACPRSIITMAD 190

Query: 123 NFEF 126
             E 
Sbjct: 191 FHEP 194


>gi|167630565|ref|YP_001681064.1| 4fe-4S ferredoxin, iron-sulfur binding domain protein
           [Heliobacterium modesticaldum Ice1]
 gi|167593305|gb|ABZ85053.1| 4fe-4S ferredoxin, iron-sulfur binding domain protein
           [Heliobacterium modesticaldum Ice1]
          Length = 60

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 11/63 (17%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + C+ C  C   CP  AI+                Y ID  KCI CG C + CP
Sbjct: 1   MTHIINDDCVNCGACAPECPTNAISEGPDK-----------YIIDADKCIDCGACADVCP 49

Query: 115 VDA 117
           V A
Sbjct: 50  VGA 52



 Score = 35.1 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 15/27 (55%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPN 123
            I    C+ CG C   CP +AI EGP+
Sbjct: 3   HIINDDCVNCGACAPECPTNAISEGPD 29


>gi|297619403|ref|YP_003707508.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus voltae A3]
 gi|297378380|gb|ADI36535.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           voltae A3]
          Length = 81

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 25/69 (36%), Gaps = 8/69 (11%)

Query: 60  EERCIACKLCEAICPAQAITIE--------SGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            ERC  C  C   CP  A   +        S  +        V   +    C  CG C E
Sbjct: 8   PERCHGCGNCVVACPVNAQDADVFGGKGPSSDEKLIMRIENGVVTVLKPELCGGCGACIE 67

Query: 112 ACPVDAIVE 120
           ACPVDAI  
Sbjct: 68  ACPVDAIEL 76


>gi|149370901|ref|ZP_01890496.1| Pyridine nucleotide-disulphide oxidoreductase domain protein
           [unidentified eubacterium SCB49]
 gi|149355687|gb|EDM44245.1| Pyridine nucleotide-disulphide oxidoreductase domain protein
           [unidentified eubacterium SCB49]
          Length = 531

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/76 (21%), Positives = 24/76 (31%), Gaps = 10/76 (13%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R     R   NG  +CI+C  C   C           +           +I    C+ CG
Sbjct: 438 RMFSKFRITTNG-GQCISCGNCSNSCEMGIDVRAYAQKGE---------NIVRSSCVGCG 487

Query: 108 LCQEACPVDAIVEGPN 123
           +C   CP   +    +
Sbjct: 488 VCSAVCPRGVLKLEND 503


>gi|90408373|ref|ZP_01216536.1| electron transport complex protein RnfB [Psychromonas sp. CNPT3]
 gi|90310536|gb|EAS38658.1| electron transport complex protein RnfB [Psychromonas sp. CNPT3]
          Length = 190

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 22/63 (34%), Gaps = 10/63 (15%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C   CP  AI   +             + +   +C  C LC   CP D I  
Sbjct: 111 DECIGCTKCIQACPVDAILGAT----------RQMHTVITDECTGCELCVAPCPTDCIDM 160

Query: 121 GPN 123
            P 
Sbjct: 161 LPI 163



 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           I   +CI C  C +ACPVDAI
Sbjct: 108 IREDECIGCTKCIQACPVDAI 128


>gi|45649071|gb|AAQ08814.1| BzdV [Azoarcus sp. CIB]
          Length = 849

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 6/71 (8%)

Query: 55  RYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDIDMIK----CIYCGL 108
            +      CI C+ C   C        +E         +RT    I        C +C  
Sbjct: 192 FFDRDYNLCIDCRRCLVACNDVRGVGCLEVKEVETPQGKRTYVGTIAPTLLESGCTFCQA 251

Query: 109 CQEACPVDAIV 119
           C   CP  A++
Sbjct: 252 CVTVCPTGALM 262


>gi|87120635|ref|ZP_01076529.1| formate dehydrogenase, alpha subunit [Marinomonas sp. MED121]
 gi|86164278|gb|EAQ65549.1| formate dehydrogenase, alpha subunit [Marinomonas sp. MED121]
          Length = 963

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 22/74 (29%), Gaps = 3/74 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     S                    C+ CG C +
Sbjct: 176 YFTFDASKCIVCNRCVRACEETQGTFALTISSRGFESKVSPGQDDAFMDSDCVSCGACVQ 235

Query: 112 ACPVDAIVEGPNFE 125
           ACP   ++E    +
Sbjct: 236 ACPTATLMETSIID 249


>gi|86149699|ref|ZP_01067929.1| iron-sulfur cluster binding protein [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88597734|ref|ZP_01100967.1| iron-sulfur cluster binding protein [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|218561757|ref|YP_002343536.1| putative iron-sulfur protein [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|85839967|gb|EAQ57226.1| iron-sulfur cluster binding protein [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|88190038|gb|EAQ94014.1| iron-sulfur cluster binding protein [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|112359463|emb|CAL34247.1| putative iron-sulfur protein [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|284925369|gb|ADC27721.1| iron-sulfur cluster binding protein [Campylobacter jejuni subsp.
           jejuni IA3902]
 gi|315927756|gb|EFV07083.1| iron-sulfur cluster binding protein [Campylobacter jejuni subsp.
           jejuni DFVF1099]
          Length = 479

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 22/89 (24%), Gaps = 10/89 (11%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-----QAITIESGPRCHDGTRR 92
                     R +           RCI C  C   CP            + P        
Sbjct: 287 EVHVILFDHNRSKMLAHEDYYEALRCIRCGACMNFCPVYDQIGGHAYQTTYPGPIGEVIS 346

Query: 93  TVRYDIDM-----IKCIYCGLCQEACPVD 116
              + ID        C  CG C E CPV 
Sbjct: 347 PNIFGIDHTGDILNFCSLCGRCSEVCPVQ 375


>gi|326384264|ref|ZP_08205946.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Gordonia neofelifaecis NRRL B-59395]
 gi|326197129|gb|EGD54321.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Gordonia neofelifaecis NRRL B-59395]
          Length = 546

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 18/54 (33%), Gaps = 3/54 (5%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
            A+CP   I                   ID   CI CG C + CPV AI     
Sbjct: 1   MAVCPVNCIHPTPDEPD---FLTAEMLYIDPETCIDCGACIDECPVSAIYPDDQ 51


>gi|326791479|ref|YP_004309300.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427]
 gi|326542243|gb|ADZ84102.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427]
          Length = 595

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 10/62 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            +  E+C  C  C  +CP  AI+                + ID  KCI CG C + C   
Sbjct: 541 YHITEQCKGCTACARVCPVGAISGT----------VKALHTIDQEKCIKCGACMDKCKFA 590

Query: 117 AI 118
           AI
Sbjct: 591 AI 592



 Score = 33.9 bits (76), Expect = 7.3,   Method: Composition-based stats.
 Identities = 10/42 (23%), Positives = 13/42 (30%)

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
                +C  G    +       +C  C  C   CPV AI   
Sbjct: 524 HIYDHKCPAGQCTALLQYHITEQCKGCTACARVCPVGAISGT 565


>gi|298528318|ref|ZP_07015722.1| molybdopterin oxidoreductase [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511970|gb|EFI35872.1| molybdopterin oxidoreductase [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 353

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 26/90 (28%), Gaps = 13/90 (14%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC--------PAQAITIESGPRCHD 88
           P          R E           +C+ C  C   C         + A           
Sbjct: 123 PKRFTPRGVLHRTEAVNPFILRDFSKCVLCGRCVQACCDIQVNNAISHAYRGIKSKIAAA 182

Query: 89  GTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           G R           C++CG C +ACPV +I
Sbjct: 183 GDRPLK-----ESDCVFCGECMQACPVGSI 207


>gi|218134954|ref|ZP_03463758.1| hypothetical protein BACPEC_02859 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990339|gb|EEC56350.1| hypothetical protein BACPEC_02859 [Bacteroides pectinophilus ATCC
           43243]
          Length = 322

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 23/72 (31%), Gaps = 15/72 (20%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L +      +C+ C  C   C       ++                    CI CG C +A
Sbjct: 230 LLKITVDSSKCVGCGQCSKACKMDVDVCKTPDHPE---------------CIRCGACIKA 274

Query: 113 CPVDAIVEGPNF 124
           CP DAI     +
Sbjct: 275 CPKDAIYLLAIY 286


>gi|182413362|ref|YP_001818428.1| hydrogenase, Fe-only [Opitutus terrae PB90-1]
 gi|177840576|gb|ACB74828.1| hydrogenase, Fe-only [Opitutus terrae PB90-1]
          Length = 581

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 59  GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115
              +CI C  C  +C   Q +   S       TR     DI + +  C+ CG C   CP 
Sbjct: 142 DFTKCIKCGRCIQVCQEMQNVWALSFLDRGINTRMAPAGDITLAESPCVKCGQCSAHCPT 201

Query: 116 DAIVEGPN 123
            AIVE   
Sbjct: 202 GAIVEKDE 209


>gi|167748210|ref|ZP_02420337.1| hypothetical protein ANACAC_02954 [Anaerostipes caccae DSM 14662]
 gi|167652202|gb|EDR96331.1| hypothetical protein ANACAC_02954 [Anaerostipes caccae DSM 14662]
          Length = 431

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 12/80 (15%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP---AQAITIESGPRCHDGTRRTVRY 96
                        +      +++C+ C  C   C     QAIT +   R           
Sbjct: 335 PNIVPADDIDRTFILYPDFNKDKCVGCGRCYVSCFDGGHQAITWDEEERKPV-------- 386

Query: 97  DIDMIKCIYCGLCQEACPVD 116
            ++  KC+ C LC   CPV 
Sbjct: 387 -LNEDKCVGCHLCLNVCPVM 405


>gi|222054705|ref|YP_002537067.1| molybdopterin oxidoreductase [Geobacter sp. FRC-32]
 gi|221563994|gb|ACM19966.1| molybdopterin oxidoreductase [Geobacter sp. FRC-32]
          Length = 842

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 21/66 (31%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            +   RCI C+ C  +                        D   + C +CG C  ACP  
Sbjct: 140 ESDPNRCILCEKCVKVDHEIVGCDAIAVVNRGEATIIDTVDGKPLNCEFCGNCVAACPTG 199

Query: 117 AIVEGP 122
            ++  P
Sbjct: 200 TLISKP 205


>gi|28199470|ref|NP_779784.1| ferredoxin [Xylella fastidiosa Temecula1]
 gi|182682201|ref|YP_001830361.1| ferredoxin [Xylella fastidiosa M23]
 gi|28057585|gb|AAO29433.1| ferredoxin II [Xylella fastidiosa Temecula1]
 gi|182632311|gb|ACB93087.1| electron transport complex, RnfABCDGE type, B subunit [Xylella
           fastidiosa M23]
 gi|307578471|gb|ADN62440.1| ferredoxin [Xylella fastidiosa subsp. fastidiosa GB514]
          Length = 139

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 23/66 (34%), Gaps = 10/66 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C  C   CP  AI   +             + +    C  C LC  ACPVD
Sbjct: 83  WIVEADCIGCTKCIQACPVDAIIGGAK----------HMHTVIAALCTGCELCVPACPVD 132

Query: 117 AIVEGP 122
            I   P
Sbjct: 133 CIELHP 138


>gi|15598686|ref|NP_252180.1| electron transport complex protein RnfB [Pseudomonas aeruginosa
           PAO1]
 gi|107103020|ref|ZP_01366938.1| hypothetical protein PaerPA_01004089 [Pseudomonas aeruginosa PACS2]
 gi|218890265|ref|YP_002439129.1| electron transport complex protein RnfB [Pseudomonas aeruginosa
           LESB58]
 gi|254242171|ref|ZP_04935493.1| hypothetical protein PA2G_02902 [Pseudomonas aeruginosa 2192]
 gi|17369007|sp|Q9HYB9|RNFB_PSEAE RecName: Full=Electron transport complex protein rnfB
 gi|226735423|sp|B7UWJ3|RNFB_PSEA8 RecName: Full=Electron transport complex protein rnfB
 gi|9949636|gb|AAG06878.1|AE004770_3 probable ferredoxin [Pseudomonas aeruginosa PAO1]
 gi|126195549|gb|EAZ59612.1| hypothetical protein PA2G_02902 [Pseudomonas aeruginosa 2192]
 gi|218770488|emb|CAW26253.1| probable ferredoxin [Pseudomonas aeruginosa LESB58]
          Length = 188

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 25/70 (35%), Gaps = 10/70 (14%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           R     E  CI C  C   CP  AI   +           + + +   +C  C LC E C
Sbjct: 104 RVAYIREAECIGCTKCIQACPVDAIVGAA----------RLMHTVIADECTGCDLCLEPC 153

Query: 114 PVDAIVEGPN 123
           PVD I     
Sbjct: 154 PVDCIEMREI 163



 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 16/38 (42%)

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           E  P             I   +CI C  C +ACPVDAI
Sbjct: 91  EPEPLDAAEETPPRVAYIREAECIGCTKCIQACPVDAI 128


>gi|332374474|gb|AEE62378.1| unknown [Dendroctonus ponderosae]
          Length = 609

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 22/56 (39%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           K C   C      +  G  C + +  +    I    CI CG+C + CP DAI    
Sbjct: 28  KRCRQECKKSCPVVRMGKLCIEVSPNSKIAVISEELCIGCGICVKKCPFDAINIIN 83


>gi|328948184|ref|YP_004365521.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Treponema succinifaciens DSM 2489]
 gi|328448508|gb|AEB14224.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Treponema succinifaciens DSM 2489]
          Length = 670

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 22/64 (34%), Gaps = 2/64 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPVD 116
            E  C  C  C  +CP  AI+               R    ++   C  CG C  ACP  
Sbjct: 591 NENACNGCGQCANVCPYGAISYIEKDFRGPNRTTITRRVSQVNKAMCHGCGACTVACPSG 650

Query: 117 AIVE 120
           A+  
Sbjct: 651 AMDL 654


>gi|326533340|dbj|BAJ93642.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 604

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           K C   C      +++G  C +    +    I    CI CG+C + CP DAI    
Sbjct: 19  KKCRQECKKSCPVVKTGKLCIEVGPASKVSFISEELCIGCGICVKKCPFDAIEIIN 74


>gi|289524083|ref|ZP_06440937.1| putative pyruvate formate-lyase-activating enzyme [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289502739|gb|EFD23903.1| putative pyruvate formate-lyase-activating enzyme [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 305

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 33/82 (40%), Gaps = 17/82 (20%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            +C+ C  C  +CP  AI  +  P             I    CI CG C  ACP DA+  
Sbjct: 59  YKCMHCGTCAHVCPMGAIEFDGIP------------IIRRSMCIACGSCSAACPSDALNL 106

Query: 121 -GPNF---EFATE-TRQELYYD 137
            G  +   E   E  R  LY+D
Sbjct: 107 IGKEYTVGELMKEIERDVLYFD 128



 Score = 35.1 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 4/48 (8%)

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           CP +     +      G            KC++CG C   CP+ AI  
Sbjct: 35  CPLRCWWCHNPEGIDSGKELM----YFEYKCMHCGTCAHVCPMGAIEF 78


>gi|262382027|ref|ZP_06075165.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. 2_1_33B]
 gi|262297204|gb|EEY85134.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. 2_1_33B]
          Length = 301

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 11/62 (17%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            ++CI C  C   CP  A+T+       D              C  CG C E CP  A+ 
Sbjct: 49  RKKCIGCGACVNACPVGALTLTQAGIVTD-----------RSLCRTCGRCAEVCPTLAME 97

Query: 120 EG 121
             
Sbjct: 98  MS 99


>gi|238916870|ref|YP_002930387.1| electron transport complex protein RnfB [Eubacterium eligens ATCC
           27750]
 gi|238872230|gb|ACR71940.1| electron transport complex protein RnfB [Eubacterium eligens ATCC
           27750]
          Length = 263

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 28/86 (32%), Gaps = 11/86 (12%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P++   T      +            CI C LC   C   AIT+E+             
Sbjct: 189 IPYKSNYTVNCSSNDKGKDVMSACSVGCIGCMLCTKQCEFGAITVENNIAH--------- 239

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEG 121
             ID  KC  CG C E CP   I   
Sbjct: 240 --IDYSKCTGCGKCAEKCPKKIIHLH 263



 Score = 33.9 bits (76), Expect = 7.2,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 5/78 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGP-----RCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
            + +C AC  C A+CP   I I          C    +         + CI C LC + C
Sbjct: 167 DKGKCKACGKCVAVCPRHLIEIIPYKSNYTVNCSSNDKGKDVMSACSVGCIGCMLCTKQC 226

Query: 114 PVDAIVEGPNFEFATETR 131
              AI    N      ++
Sbjct: 227 EFGAITVENNIAHIDYSK 244


>gi|218885428|ref|YP_002434749.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218756382|gb|ACL07281.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 652

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 22/64 (34%), Gaps = 7/64 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              RC+ C  C   CP  AI            R  ++  +    C  CG+C   CP  AI
Sbjct: 580 DVRRCVGCGKCITTCPYGAIEWME-------LRGEMKARVIETVCQGCGICTVTCPQGAI 632

Query: 119 VEGP 122
               
Sbjct: 633 QLQH 636



 Score = 41.6 bits (96), Expect = 0.036,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 30/97 (30%), Gaps = 13/97 (13%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPA----QAITIESG----PRCHDGTRRTVRYD 97
            F+ +   +      E C  C LC   CP+     A     G               +  
Sbjct: 225 NFKVDVRRKATYVDWELCTGCGLCMEKCPSRKSPDAFNEHVGVTTSINIPFPQAIPKKAI 284

Query: 98  IDMIKCI-----YCGLCQEACPVDAIVEGPNFEFATE 129
           ID   C       CG+C + CP  AI      +  TE
Sbjct: 285 IDPTSCRQFVKGKCGVCAKVCPTGAIRYDMEDQVVTE 321


>gi|182417534|ref|ZP_02948861.1| pyruvate formate-lyase 2-activating enzyme [Clostridium butyricum
           5521]
 gi|237665714|ref|ZP_04525702.1| glycyl-radical enzyme activating protein family [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182378703|gb|EDT76230.1| pyruvate formate-lyase 2-activating enzyme [Clostridium butyricum
           5521]
 gi|237658661|gb|EEP56213.1| glycyl-radical enzyme activating protein family [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 298

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 26/85 (30%), Gaps = 11/85 (12%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           K         +    +      +CI C  C   CP+QAI  +                ID
Sbjct: 32  KCKWCANPESQMEKVQILYDSTKCIHCLSCVNSCPSQAIQHQDDKII-----------ID 80

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNF 124
             KC  C  C   CP  A+     +
Sbjct: 81  HEKCTGCLTCANICPQKALENEGEY 105


>gi|150403365|ref|YP_001330659.1| cobyrinic acid ac-diamide synthase [Methanococcus maripaludis C7]
 gi|150034395|gb|ABR66508.1| Cobyrinic acid ac-diamide synthase [Methanococcus maripaludis C7]
          Length = 282

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/107 (24%), Positives = 37/107 (34%), Gaps = 22/107 (20%)

Query: 24  LRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE-------RCIACKLCEAICPAQ 76
                  K   +   E  +    F  E    +   G +       +CI C+ C   C   
Sbjct: 22  FSELLDKKNIADCDVEAPNLHLMFENEIIKTKEYIGSQTAIIDSDKCIKCEKCLE-CRFG 80

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           AIT E                ++ +KC  CGLC+  CPVDA+    N
Sbjct: 81  AITSE--------------IKVNPLKCEGCGLCKYVCPVDAVTMVDN 113


>gi|119873466|ref|YP_931473.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum islandicum DSM 4184]
 gi|119674874|gb|ABL89130.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           islandicum DSM 4184]
          Length = 285

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/76 (36%), Positives = 33/76 (43%), Gaps = 9/76 (11%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           RR     E+C AC LC  +CP QAI ++            V   +D  KC  CGLC EAC
Sbjct: 181 RRPVIDMEKCTACFLCAGVCPTQAIEVDEDE---------VMLKVDSYKCAECGLCAEAC 231

Query: 114 PVDAIVEGPNFEFATE 129
           P  AI      E    
Sbjct: 232 PEGAIKLVEGGEPVET 247



 Score = 37.4 bits (85), Expect = 0.75,   Method: Composition-based stats.
 Identities = 14/40 (35%), Positives = 16/40 (40%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + +       G     R  IDM KC  C LC   CP  AI
Sbjct: 166 SYDREKAVELGLVNPRRPVIDMEKCTACFLCAGVCPTQAI 205



 Score = 33.9 bits (76), Expect = 7.6,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 11/50 (22%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           C+ C   CPA A+ ++                 +   C+ CG+C  ACP 
Sbjct: 20  CRKCVDACPAGALYVDG-----------RWVKAEPSLCVGCGVCMSACPT 58


>gi|120603177|ref|YP_967577.1| methyl-viologen-reducing hydrogenase, delta subunit [Desulfovibrio
           vulgaris DP4]
 gi|120563406|gb|ABM29150.1| putative adenylylsulfate reductase-associated electron transfer
           protein QmoB [Desulfovibrio vulgaris DP4]
          Length = 758

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 21/68 (30%), Gaps = 10/68 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L        RC  CK C   CP  A+  +                 +  +C  CG C  A
Sbjct: 541 LSYPIFNFVRCTQCKRCTEECPFGALDDDEKGTPKP----------NYSRCRRCGTCMGA 590

Query: 113 CPVDAIVE 120
           CP   I  
Sbjct: 591 CPERVISF 598


>gi|46579100|ref|YP_009908.1| iron-sulfur cluster-binding protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46448513|gb|AAS95167.1| iron-sulfur cluster-binding protein [Desulfovibrio vulgaris str.
           Hildenborough]
          Length = 162

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 20/65 (30%), Gaps = 13/65 (20%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI C  C   CP  A+ ++                     CI+CG C   CP + I
Sbjct: 74  DRSLCIRCGRCAEACPVDAVHMDGETGLPYV-------------CIHCGRCVAFCPHECI 120

Query: 119 VEGPN 123
                
Sbjct: 121 ELVDQ 125



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 5/58 (8%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           C  C+    AQA    +  +   G  +  R       CI CG C EACPVDA+     
Sbjct: 46  CLACDPAPCAQACPTGAYAQRKGGGVKVDR-----SLCIRCGRCAEACPVDAVHMDGE 98


>gi|323492348|ref|ZP_08097501.1| electron transport complex protein RnfC [Vibrio brasiliensis LMG
           20546]
 gi|323313395|gb|EGA66506.1| electron transport complex protein RnfC [Vibrio brasiliensis LMG
           20546]
          Length = 728

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 9/56 (16%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI----KCIYCGLCQEACP 114
           CI C  C   CPA  +     P+      +   +D         CI CG C   CP
Sbjct: 378 CIRCGQCAEACPASLL-----PQQLVWHAKAEEFDKCEELNIKDCIECGACAFVCP 428



 Score = 35.5 bits (80), Expect = 2.3,   Method: Composition-based stats.
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 91  RRTVRYDIDMIKCIYCGLCQEACP 114
           R+ +  +   + CI CG C EACP
Sbjct: 366 RKEISPNQYEMACIRCGQCAEACP 389


>gi|317472264|ref|ZP_07931592.1| dihydroorotate dehydrogenase [Anaerostipes sp. 3_2_56FAA]
 gi|316900221|gb|EFV22207.1| dihydroorotate dehydrogenase [Anaerostipes sp. 3_2_56FAA]
          Length = 418

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 6/77 (7%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
                        +      +++C+ C  C   C         G +      +  +  ++
Sbjct: 322 PNIVPADDIDRTFILYPDFNKDKCVGCGRCYVSCFDG------GHQAITWDEKERKPVLN 375

Query: 100 MIKCIYCGLCQEACPVD 116
             KC+ C LC   CPV 
Sbjct: 376 EDKCVGCHLCLNVCPVM 392


>gi|308271021|emb|CBX27631.1| hypothetical protein N47_H24530 [uncultured Desulfobacterium sp.]
          Length = 263

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 14/108 (12%)

Query: 29  KAKTTINYPFE-KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH 87
           +   T+ YP         RF G   + +          C LC   CP  AI++       
Sbjct: 11  QKYRTMAYPDGSPPELPARFAGRPVVNQLNCESN----CNLCITACPVAAISLSQETGGP 66

Query: 88  DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
                     IDM +CI+C  C+ A   DAI     +  A+ +R EL+
Sbjct: 67  V---------IDMGRCIFCRACESAYLADAIHFSREYRLASSSRSELF 105


>gi|307354602|ref|YP_003895653.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanoplanus petrolearius DSM 11571]
 gi|307354608|ref|YP_003895659.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanoplanus petrolearius DSM 11571]
 gi|307157835|gb|ADN37215.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanoplanus
           petrolearius DSM 11571]
 gi|307157841|gb|ADN37221.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanoplanus
           petrolearius DSM 11571]
          Length = 675

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 23/80 (28%), Gaps = 7/80 (8%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR----- 95
              +   R E  ++        C  C  C  +CP                          
Sbjct: 238 RKKARGTRNEAEMKADGITGSGCNGCGDCATVCPVIKPNPFEFGMAPRKAIYIYHAQVMP 297

Query: 96  --YDIDMIKCIYCGLCQEAC 113
             Y ID   C+ CGLC +AC
Sbjct: 298 LQYTIDYDACVKCGLCVDAC 317



 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 9/80 (11%)

Query: 45  PRFRGEHALRRYPNG--EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
           P  +G+  L  Y     E+ C  C +C   CP  A+++                 +   K
Sbjct: 581 PIHQGKVQLEPYFAQCMEDLCAGCGMCVPQCPYGALSLTEK-------NGRQVMQVTEAK 633

Query: 103 CIYCGLCQEACPVDAIVEGP 122
           C  CG C   CP  AI    
Sbjct: 634 CKGCGTCGGFCPGGAIKMQH 653


>gi|261403596|ref|YP_003247820.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus vulcanius M7]
 gi|261370589|gb|ACX73338.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus vulcanius M7]
          Length = 658

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/80 (27%), Positives = 29/80 (36%), Gaps = 7/80 (8%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAIT-------IESGPRCHDGTRRTVRYDI 98
            F      +     E+ C  C  C A+CP +                        + Y I
Sbjct: 228 NFEVTIEKKPRYVDEDICTGCGACAAVCPIEVPNEFDLGLGTRKAIYVPFAQAIPLVYTI 287

Query: 99  DMIKCIYCGLCQEACPVDAI 118
           DM  CI CGLC++AC   AI
Sbjct: 288 DMEHCIRCGLCEKACGPGAI 307



 Score = 41.2 bits (95), Expect = 0.043,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 7/70 (10%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             + R    E+ C  C++C  +CP  AIT              +   ++ + C  CG C 
Sbjct: 571 IEMIRAIVDEDVCGGCQVCAKMCPYNAITYVEKD-------GHLIAQVNDVACKGCGACA 623

Query: 111 EACPVDAIVE 120
            ACP  A+  
Sbjct: 624 GACPSGAMQL 633


>gi|240948344|ref|ZP_04752730.1| quinol dehydrogenase membrane component [Actinobacillus minor
           NM305]
 gi|240297383|gb|EER47924.1| quinol dehydrogenase membrane component [Actinobacillus minor
           NM305]
          Length = 297

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 5/73 (6%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           ++       RC  C  C  +CP          R     +      +    CI CG C + 
Sbjct: 222 IKVNVVDRNRCDRCMDCYNVCP-----EPQVLRLPLHGKPEDSQIVLSQDCISCGRCIDV 276

Query: 113 CPVDAIVEGPNFE 125
           CP +    G  FE
Sbjct: 277 CPENVFAFGSRFE 289


>gi|225027330|ref|ZP_03716522.1| hypothetical protein EUBHAL_01586 [Eubacterium hallii DSM 3353]
 gi|224955332|gb|EEG36541.1| hypothetical protein EUBHAL_01586 [Eubacterium hallii DSM 3353]
          Length = 281

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/123 (20%), Positives = 42/123 (34%), Gaps = 15/123 (12%)

Query: 1   MRI--FRCNVSFLFLKE--FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRY 56
           M+I      + ++FL    F     + L + FK            +   +     +L R 
Sbjct: 170 MKIANLERIMFWIFLVGNTFYYIVGIVLAFVFKDNRAFCKYLCPVTVFLKPMSYFSLLRV 229

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E +CI C  C  +CP      +   +  +G            +CI C  C + CP  
Sbjct: 230 HCDENKCIHCGKCLKVCPMNVEVNKESRKRKNG-----------TECILCYECTKVCPTK 278

Query: 117 AIV 119
           A+ 
Sbjct: 279 ALH 281


>gi|315231321|ref|YP_004071757.1| ketoisovalerate oxidoreductase VorD-like subunit [Thermococcus
           barophilus MP]
 gi|315184349|gb|ADT84534.1| ketoisovalerate oxidoreductase VorD-like subunit [Thermococcus
           barophilus MP]
          Length = 105

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 24/78 (30%), Gaps = 10/78 (12%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
            F G+         E +CI C +C   C          P      +      +D   C  
Sbjct: 36  NFTGDWRTFIPVIDESKCIKCYICWKFC----------PEPSIYIKEDGYVAVDYDYCKG 85

Query: 106 CGLCQEACPVDAIVEGPN 123
           CG+C   CP  AI     
Sbjct: 86  CGICANECPTKAITMVRE 103


>gi|170757405|ref|YP_001780996.1| iron-sulfur cluster-binding protein [Clostridium botulinum B1 str.
           Okra]
 gi|169122617|gb|ACA46453.1| iron-sulfur cluster-binding protein [Clostridium botulinum B1 str.
           Okra]
          Length = 425

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 3/69 (4%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              ++RC+ C  C  +CP +A               +   ++    C+ CG+C + C  +
Sbjct: 288 NIDKDRCVGCGKCTKVCPMEA---IKLKETSLENHNSKIAELSEDLCLGCGVCVKNCKTN 344

Query: 117 AIVEGPNFE 125
           AI      E
Sbjct: 345 AIKLVRRKE 353



 Score = 40.5 bits (93), Expect = 0.070,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 6/64 (9%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           PN    C  C  CEA   A+                +   +ID  +C+ CG C + CP++
Sbjct: 254 PNFICNCCKC-HCEAFVSAK-----KFGFLVPVNTTSYLPNIDKDRCVGCGKCTKVCPME 307

Query: 117 AIVE 120
           AI  
Sbjct: 308 AIKL 311


>gi|167748563|ref|ZP_02420690.1| hypothetical protein ANACAC_03336 [Anaerostipes caccae DSM 14662]
 gi|167651877|gb|EDR96006.1| hypothetical protein ANACAC_03336 [Anaerostipes caccae DSM 14662]
          Length = 260

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 12/72 (16%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
            +R  + +   P+  ++C  C LC  +CP  AI  E                     CI 
Sbjct: 172 PYREYNGVPMKPSAGKQCKKCGLCARLCPVGAIPAEHPEETLK------------ETCIS 219

Query: 106 CGLCQEACPVDA 117
           C  C   CP  A
Sbjct: 220 CMRCIAVCPEHA 231


>gi|145589581|ref|YP_001156178.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
 gi|145047987|gb|ABP34614.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Polynucleobacter necessarius subsp. asymbioticus
           QLW-P1DMWA-1]
          Length = 696

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 9/64 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++ C  C  C + CP  A+             +          C+ CG+C + CP  A+
Sbjct: 570 NKDACTLCMSCVSSCPEGALLDNPDEPILSFIEKQ---------CVQCGICVQTCPEHAL 620

Query: 119 VEGP 122
              P
Sbjct: 621 TLDP 624



 Score = 42.0 bits (97), Expect = 0.030,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 11/24 (45%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEG 121
           ID   C  CG C E CP  AI   
Sbjct: 185 IDPEMCTRCGACVEVCPEGAIDLS 208



 Score = 37.0 bits (84), Expect = 0.97,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 7/55 (12%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C  C  +C   AI+                 +++   C+ CG C   CP  A+
Sbjct: 311 VGCNACIDVCSTGAISSLFKGGQGS-------VEVNPNLCMGCGACSTVCPSGAM 358



 Score = 33.9 bits (76), Expect = 6.6,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 20/86 (23%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           + P   E C  C  C  +CP  AI               + + I++ KC     C  AC 
Sbjct: 182 QNPIDPEMCTRCGACVEVCPEGAID--------------LSFQINLDKCKSHRSCVTAC- 226

Query: 115 VDAIVEGPNFEFATETRQ---ELYYD 137
             A +   +F+ A   R    +L  D
Sbjct: 227 --ASIGAISFDRADRKRNSEFDLILD 250


>gi|37787353|gb|AAP50521.1| Hox1U [Thiocapsa roseopersicina]
          Length = 243

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 4/68 (5%)

Query: 55  RYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLCQ 110
            +    +RCI C  C  +C     A T +   R  D    T           C  CG C 
Sbjct: 149 MFRLDHDRCILCTRCVRVCDEIEGAHTWDVMGRGSDCRVITDMAQPWGESDTCTSCGKCV 208

Query: 111 EACPVDAI 118
           + CP  A+
Sbjct: 209 QVCPTGAL 216


>gi|46579262|ref|YP_010070.1| heterodisulfide reductase, iron-sulfur-binding subunit
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|46448676|gb|AAS95329.1| heterodisulfide reductase, iron-sulfur-binding subunit, putative
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|311233089|gb|ADP85943.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfovibrio
           vulgaris RCH1]
          Length = 758

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 21/68 (30%), Gaps = 10/68 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L        RC  CK C   CP  A+  +                 +  +C  CG C  A
Sbjct: 541 LSYPIFNFVRCTQCKRCTEECPFGALDDDEKGTPKP----------NYSRCRRCGTCMGA 590

Query: 113 CPVDAIVE 120
           CP   I  
Sbjct: 591 CPERVISF 598


>gi|307249377|ref|ZP_07531370.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306858599|gb|EFM90662.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
          Length = 645

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 34/107 (31%), Gaps = 3/107 (2%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E  CI C  C   CP   +  +               +  +  CI CG+C   CP  
Sbjct: 379 PEPERSCIRCSSCSDACPVGLLPQQLY-WYARSEDHDKSKEYHLDACIECGVCAYVCP-S 436

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            I     F        E+    ++      R+E+   R +  +   R
Sbjct: 437 YIPLIQYFRQEKAKITEIEEKAKKAEEAKARFEAREAR-LQKEKDAR 482


>gi|297617564|ref|YP_003702723.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297145401|gb|ADI02158.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 465

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 26/67 (38%), Gaps = 2/67 (2%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           +R+    ERC  C  C   CP  AI      R            ID + C  CGLC   C
Sbjct: 281 KRFEINAERCAYCLTCYRNCPHMAIEFRRDDR--YANLYGEACFIDDLSCRGCGLCYALC 338

Query: 114 PVDAIVE 120
           P  AI E
Sbjct: 339 PAQAITE 345



 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 18/38 (47%)

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
            R   R++I+  +C YC  C   CP  AI    +  +A
Sbjct: 277 MRGEKRFEINAERCAYCLTCYRNCPHMAIEFRRDDRYA 314


>gi|284162167|ref|YP_003400790.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Archaeoglobus profundus DSM 5631]
 gi|284012164|gb|ADB58117.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Archaeoglobus profundus DSM 5631]
          Length = 91

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 6/72 (8%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G  A++      ++C+ C  C  +CP   I +           + V   +D   C  CG+
Sbjct: 20  GSWAVKIPKVNPDKCVGCGECRMLCPDGCIELVHVEE------KKVVAKVDYDYCKGCGI 73

Query: 109 CQEACPVDAIVE 120
           C + CP +AI  
Sbjct: 74  CSDICPANAIEM 85


>gi|284049120|ref|YP_003399459.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Acidaminococcus fermentans DSM 20731]
 gi|283953341|gb|ADB48144.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Acidaminococcus fermentans DSM 20731]
          Length = 375

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 24/61 (39%), Gaps = 10/61 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            EE C  C  C   C + AI+     + H          ID  KC  CG C  AC  DAI
Sbjct: 193 DEELCRGCGRCAKECGSDAISYGENHKAH----------IDEEKCAGCGRCIGACGFDAI 242

Query: 119 V 119
            
Sbjct: 243 Q 243


>gi|260892959|ref|YP_003239056.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ammonifex
           degensii KC4]
 gi|260865100|gb|ACX52206.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ammonifex
           degensii KC4]
          Length = 416

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/96 (22%), Positives = 27/96 (28%), Gaps = 9/96 (9%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ-------AITIESGPRCHDGTR 91
           E+                      C AC  C  +CPA+        +             
Sbjct: 82  EEIKGEEGNFEVKVKVNPRYVTAACTACGKCVEVCPAERPNEFNYNLDKTKAIYLPHIFA 141

Query: 92  RTVRYDIDMIKCIY--CGLCQEACPVDAIVEGPNFE 125
              +Y IDM  C    C  C E CPV AI      E
Sbjct: 142 FPYKYVIDMQACQGTSCSKCVEVCPVKAIDLNMQPE 177



 Score = 35.1 bits (79), Expect = 3.1,   Method: Composition-based stats.
 Identities = 13/59 (22%), Positives = 15/59 (25%), Gaps = 13/59 (22%)

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP-------------VDAIVEGPNFEF 126
             G   +   +  V        C  CG C E CP               AI     F F
Sbjct: 84  IKGEEGNFEVKVKVNPRYVTAACTACGKCVEVCPAERPNEFNYNLDKTKAIYLPHIFAF 142


>gi|157414388|ref|YP_001481644.1| iron-sulfur cluster binding protein [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|157385352|gb|ABV51667.1| iron-sulfur cluster binding protein [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|307747032|gb|ADN90302.1| Iron-sulfur cluster binding protein [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315932532|gb|EFV11466.1| iron-sulfur cluster binding protein [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 479

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 22/89 (24%), Gaps = 10/89 (11%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-----QAITIESGPRCHDGTRR 92
                     R +           RCI C  C   CP            + P        
Sbjct: 287 EVHVILFDHNRSKMLAHEDYYEALRCIRCGACMNFCPVYDQIGGHAYQTTYPGPIGEVIS 346

Query: 93  TVRYDIDM-----IKCIYCGLCQEACPVD 116
              + ID        C  CG C E CPV 
Sbjct: 347 PNIFGIDHTGDILNFCSLCGRCSEVCPVQ 375


>gi|281357443|ref|ZP_06243931.1| ferredoxin [Victivallis vadensis ATCC BAA-548]
 gi|281316046|gb|EFB00072.1| ferredoxin [Victivallis vadensis ATCC BAA-548]
          Length = 675

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 26/84 (30%), Gaps = 6/84 (7%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI--ESGPRCHDGTRRTVRY 96
           E+   S   R    ++       +CI C  C  +C             R       T   
Sbjct: 592 ERLPVSYDIRHPLIIQ----DRGKCIKCSTCVKVCKEVVNRSLLSPKKRGFYTYVGTAFD 647

Query: 97  DIDMIKCIYCGLCQEACPVDAIVE 120
                 C  CG C EACPV A+  
Sbjct: 648 KGFPASCSECGECIEACPVGALDW 671


>gi|1561730|gb|AAC47288.1| Dreg-3 protein [Drosophila melanogaster]
          Length = 626

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 18/65 (27%), Gaps = 8/65 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP-VDA 117
            ++ CI C  C   C                  +          C  C LC   CP +D 
Sbjct: 544 DDDMCINCGKCYMTCADSGYQAIE-------FDKDTHIPHVNDDCTGCTLCVSVCPIIDC 596

Query: 118 IVEGP 122
           I   P
Sbjct: 597 ITMVP 601


>gi|332799924|ref|YP_004461423.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Tepidanaerobacter
           sp. Re1]
 gi|332697659|gb|AEE92116.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Tepidanaerobacter
           sp. Re1]
          Length = 1174

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 25/80 (31%), Gaps = 16/80 (20%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRRTV----------- 94
            A+       E CI C  C  +CP  AI       E      +G                
Sbjct: 678 IAVNIPEWQAESCIQCNQCAFVCPHAAIRPFLLNEEEVKNAPEGFVSKKATGRGLDGLSF 737

Query: 95  RYDIDMIKCIYCGLCQEACP 114
           R  +  + C  CG+C   CP
Sbjct: 738 RIQVSPLDCTGCGVCANTCP 757


>gi|332796474|ref|YP_004457974.1| ABC transporter-like protein [Acidianus hospitalis W1]
 gi|332694209|gb|AEE93676.1| ABC transporter related protein [Acidianus hospitalis W1]
          Length = 600

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 21/75 (28%), Gaps = 5/75 (6%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
                +       ++C     C   CP                    +  I    CI CG
Sbjct: 1   MRVAVINYDFCKPDKCNL--ECIRFCPIN---RSGSKAIELSEIVKGKPVIYEETCIGCG 55

Query: 108 LCQEACPVDAIVEGP 122
           +C + CP +AI    
Sbjct: 56  ICVKKCPYEAISIVN 70


>gi|328543747|ref|YP_004303856.1| formate dehydrogenase, alpha subunit protein [polymorphum gilvum
           SL003B-26A1]
 gi|326413491|gb|ADZ70554.1| Formate dehydrogenase, alpha subunit protein [Polymorphum gilvum
           SL003B-26A1]
          Length = 959

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/86 (19%), Positives = 27/86 (31%), Gaps = 3/86 (3%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTV--RYDIDM 100
                 + +   +     +CI C  C   C   Q     +      G+R           
Sbjct: 159 PQWLPKDESNPYFTYDPSKCIVCSRCVRACEEVQGTFALTIEGRGFGSRVAAGLAEPFVA 218

Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEF 126
            +C+ CG C +ACP   + E    E 
Sbjct: 219 SECVSCGACVQACPTATLQEKSVIEI 244


>gi|304559052|gb|ADM41716.1| Pyridine nucleotide-disulfide oxidoreductase family protein
           [Edwardsiella tarda FL6-60]
          Length = 655

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 23/73 (31%), Gaps = 13/73 (17%)

Query: 48  RGEHALRRYPNGEERCIACK--LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           R     R        C  C+   C  +CP  AI            +      +   KCI 
Sbjct: 18  RIHVIRRGDRRTALLCRHCEDAPCANVCPNGAIE-----------KYNDSIQVRQEKCIG 66

Query: 106 CGLCQEACPVDAI 118
           C  C  ACP  AI
Sbjct: 67  CKTCVVACPFGAI 79



 Score = 37.8 bits (86), Expect = 0.59,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 8/70 (11%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL------CQEAC 113
           +E+CI CK C   CP  AI + +          +VR +    KC  C        C  AC
Sbjct: 61  QEKCIGCKTCVVACPFGAIEVITQSDPRSNHPDSVRANAH--KCDLCDEVADGPSCVAAC 118

Query: 114 PVDAIVEGPN 123
           P +A+     
Sbjct: 119 PSNALQLISE 128


>gi|317497178|ref|ZP_07955504.1| ferredoxin oxidoreductase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|291558802|emb|CBL37602.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric
           [butyrate-producing bacterium SSC/2]
 gi|316895588|gb|EFV17744.1| ferredoxin oxidoreductase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 1173

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 28/103 (27%), Gaps = 20/103 (19%)

Query: 31  KTTINYPFEKGSTS-----PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
           K +   P+  G           RG        N  + CI C  C  +CP   I   +   
Sbjct: 655 KVSDLVPYVDGHMPLGASAFEKRGVAVDVPSWN-PDNCIQCNFCAYVCPHATIRPVAMTE 713

Query: 86  CHDGTR--------------RTVRYDIDMIKCIYCGLCQEACP 114
                                     + ++ C+ CG C   CP
Sbjct: 714 EEAKAAPAATKTADMTGMPGYKFAMTVTVLDCLGCGSCVNICP 756


>gi|257470938|ref|ZP_05635028.1| hypothetical protein FulcA4_16456 [Fusobacterium ulcerans ATCC
           49185]
 gi|317065136|ref|ZP_07929621.1| pyruvate:ferredoxin oxidoreductase [Fusobacterium ulcerans ATCC
           49185]
 gi|313690812|gb|EFS27647.1| pyruvate:ferredoxin oxidoreductase [Fusobacterium ulcerans ATCC
           49185]
          Length = 100

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 10/64 (15%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            ++CI C LC   CP  AI ++ G R           D DM  C  CG+C +ACP  AI 
Sbjct: 47  RDKCIDCLLCVPCCPDSAIPVKDGKRL----------DFDMDHCKGCGICVKACPFKAIE 96

Query: 120 EGPN 123
               
Sbjct: 97  LIKE 100


>gi|240103196|ref|YP_002959505.1| putative ATPase RIL [Thermococcus gammatolerans EJ3]
 gi|239910750|gb|ACS33641.1| Predicted ATPase, RNase L inhibitor-like protein [Thermococcus
           gammatolerans EJ3]
          Length = 590

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 24/79 (30%), Gaps = 5/79 (6%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +        +C    LCE +CP        G           R  I    C  CG+C  
Sbjct: 6   VIDYDKCNPNKCGHF-LCERVCPVN----RMGGEAIIIDEENYRPIIQEASCTGCGICVH 60

Query: 112 ACPVDAIVEGPNFEFATET 130
            CP +AI      E   E 
Sbjct: 61  KCPFNAITIVNLPEQLDED 79


>gi|260945002|ref|XP_002616799.1| hypothetical protein CLUG_04040 [Clavispora lusitaniae ATCC 42720]
 gi|238850448|gb|EEQ39912.1| hypothetical protein CLUG_04040 [Clavispora lusitaniae ATCC 42720]
          Length = 618

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 25/56 (44%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           K C+  C      +++G  C + T  +    I    C+ CG+C + CP DAI    
Sbjct: 29  KKCKQECRKSCPVVKTGKLCIEVTPASKIAFISETLCVGCGICVKKCPFDAINIIN 84


>gi|296127383|ref|YP_003634635.1| hypothetical protein Bmur_2364 [Brachyspira murdochii DSM 12563]
 gi|296019199|gb|ADG72436.1| protein of unknown function DUF362 [Brachyspira murdochii DSM
           12563]
          Length = 376

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 5/73 (6%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            + +    + +C+ C +C  +CP   + +    +      +    +     CI C  CQE
Sbjct: 309 IIPKPVIDKSKCVKCGVCVKVCPVTPLALNFDKKG-----KNSPPEYYYKHCISCYCCQE 363

Query: 112 ACPVDAIVEGPNF 124
            CP  AI     F
Sbjct: 364 LCPHKAIFLKRKF 376


>gi|242281233|ref|YP_002993362.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
 gi|242124127|gb|ACS81823.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
          Length = 367

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 11/83 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E+C  C +C   C A+A+ ++   +            I   KC  CG C  +C   AI
Sbjct: 190 HPEKCTGCGVCITECAAKALDLDDDGKI-----------IMGGKCTGCGRCFLSCRYGAI 238

Query: 119 VEGPNFEFATETRQELYYDKERL 141
                 +    T++ + Y+K  L
Sbjct: 239 SIDWKSDVEVFTKRLIEYNKAIL 261



 Score = 34.7 bits (78), Expect = 4.1,   Method: Composition-based stats.
 Identities = 7/43 (16%), Positives = 14/43 (32%)

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
            +  +       +    +   KC  CG+C   C   A+    +
Sbjct: 172 CASKKGKMHIHVSTAPHLHPEKCTGCGVCITECAAKALDLDDD 214


>gi|188579717|ref|YP_001923162.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium populi BJ001]
 gi|179343215|gb|ACB78627.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methylobacterium populi BJ001]
          Length = 665

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 9/66 (13%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E C  C  C   CP  A+T  +                +   C+ CGLC   CP D I  
Sbjct: 508 EDCTLCLSCVGACPTHALTDSADRPLLA---------FEESLCVQCGLCAATCPEDVIDL 558

Query: 121 GPNFEF 126
            P  +F
Sbjct: 559 TPRIDF 564



 Score = 38.5 bits (88), Expect = 0.32,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 16/54 (29%), Gaps = 11/54 (20%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
             C  C  +CP  AI                   ID   C  CG C   CP  A
Sbjct: 267 TGCTRCLDVCPTGAIASAGDSVA-----------IDPYICAGCGSCAAVCPTGA 309


>gi|147921640|ref|YP_684543.1| Fe-S cluster-binding protein, C-terminal fragment [uncultured
           methanogenic archaeon RC-I]
 gi|110619939|emb|CAJ35217.1| conserved hypothetical Fe-S cluster-binding protein, C-terminal
           fragment [uncultured methanogenic archaeon RC-I]
          Length = 202

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 32/91 (35%), Gaps = 11/91 (12%)

Query: 28  FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH 87
           FK   T++             G  A  R     +RC  C +C   CP +A+         
Sbjct: 102 FKLAATMDLSRVPAPLLNLASGMVA-TRPVIEVQRCRKCGVCVRDCPPKAMFFSPRRLPE 160

Query: 88  DGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                     ID  KCI C  CQE CP  A+
Sbjct: 161 ----------IDYKKCIRCYCCQELCPESAV 181


>gi|317470821|ref|ZP_07930202.1| 4Fe-4S binding domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
 gi|316901648|gb|EFV23581.1| 4Fe-4S binding domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
          Length = 260

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 12/72 (16%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
            +R  + +   P+  ++C  C LC  +CP  AI  E                     CI 
Sbjct: 172 PYREYNGVPMKPSAGKQCKKCGLCARLCPVGAIPAEHPEETLK------------ETCIS 219

Query: 106 CGLCQEACPVDA 117
           C  C   CP  A
Sbjct: 220 CMRCIAVCPEHA 231


>gi|307718964|ref|YP_003874496.1| hypothetical protein STHERM_c12820 [Spirochaeta thermophila DSM
           6192]
 gi|306532689|gb|ADN02223.1| hypothetical protein STHERM_c12820 [Spirochaeta thermophila DSM
           6192]
          Length = 289

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 21/65 (32%), Gaps = 9/65 (13%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            N    CI C  C  +C      I                 ID +KCI CG C   CP  
Sbjct: 218 KNCAVACIGCGKCVKVCETVTQAITLEHNLAY---------IDPVKCIACGKCVAECPTG 268

Query: 117 AIVEG 121
           AI   
Sbjct: 269 AIAAT 273



 Score = 38.9 bits (89), Expect = 0.22,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 23/77 (29%), Gaps = 8/77 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD--------IDMIKCIYCGLCQ 110
            EE+C AC +C  +CP     +    +         R             + CI CG C 
Sbjct: 172 DEEKCTACGVCVEVCPRNLFELTPRGKRGRRVWINCRNTEKGALARKNCAVACIGCGKCV 231

Query: 111 EACPVDAIVEGPNFEFA 127
           + C             A
Sbjct: 232 KVCETVTQAITLEHNLA 248



 Score = 38.5 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 9/64 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C+    C   CP  AI+++           T    +D  KC  CG+C E CP +  
Sbjct: 141 CPYGCLHYGDCAEACPFDAISMDP---------VTGLPVVDEEKCTACGVCVEVCPRNLF 191

Query: 119 VEGP 122
              P
Sbjct: 192 ELTP 195


>gi|304314163|ref|YP_003849310.1| conserved hypothetical protein containing a ferredoxin domain
           [Methanothermobacter marburgensis str. Marburg]
 gi|302587622|gb|ADL57997.1| conserved hypothetical protein containing a ferredoxin domain
           [Methanothermobacter marburgensis str. Marburg]
          Length = 366

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/99 (23%), Positives = 32/99 (32%), Gaps = 25/99 (25%)

Query: 17  VGAFFLCLRYFFKAKTTINYPFEKGS-TSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75
           +  F   L+       TI    E+     P  RG             C  C  C + CP 
Sbjct: 159 MSGFGGALKNLAMGCATIQGKIEQHECAKPVVRG------------ECTECGECVSECPV 206

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            A+T+  G              I+  +CI C  C + CP
Sbjct: 207 DAMTLHDG------------VMIEYDRCIACMNCLDTCP 233


>gi|255323334|ref|ZP_05364468.1| ferredoxin-type protein NapH [Campylobacter showae RM3277]
 gi|255299626|gb|EET78909.1| ferredoxin-type protein NapH [Campylobacter showae RM3277]
          Length = 266

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 9/65 (13%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G+ AL R  +    C  C  C+ ICP   +    G +            I   +CI CG 
Sbjct: 193 GKFALIRVKHDAASCTNCMKCKLICPENQVLGIIGKQSGF---------ITSSECISCGR 243

Query: 109 CQEAC 113
           C + C
Sbjct: 244 CIDVC 248


>gi|224825579|ref|ZP_03698684.1| formate dehydrogenase, alpha subunit [Lutiella nitroferrum 2002]
 gi|224602500|gb|EEG08678.1| formate dehydrogenase, alpha subunit [Lutiella nitroferrum 2002]
          Length = 950

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 22/69 (31%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     SG                  +C+ CG C +
Sbjct: 160 YFSYDPSKCIVCNRCVRACEETQGTFALTISGRGFESRVSPGQSEAFMESECVSCGACVD 219

Query: 112 ACPVDAIVE 120
           ACP   + E
Sbjct: 220 ACPTATLQE 228


>gi|160943469|ref|ZP_02090702.1| hypothetical protein FAEPRAM212_00959 [Faecalibacterium prausnitzii
           M21/2]
 gi|158445148|gb|EDP22151.1| hypothetical protein FAEPRAM212_00959 [Faecalibacterium prausnitzii
           M21/2]
 gi|295103736|emb|CBL01280.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta
           subunits [Faecalibacterium prausnitzii SL3/3]
          Length = 56

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 11/64 (17%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + C+ C  CE  CP  AITIE+G              ++   CI CG C+ ACP
Sbjct: 1   MAHKVSDACVGCGACEGACPVGAITIENGAAV-----------VNADSCIDCGACEGACP 49

Query: 115 VDAI 118
             AI
Sbjct: 50  TGAI 53


>gi|222056800|ref|YP_002539162.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           FRC-32]
 gi|221566089|gb|ACM22061.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           FRC-32]
          Length = 665

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 7/83 (8%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ C+ C  C+ +CP  AI  E   R   G    V   ++   C  CG CQ  CP  ++
Sbjct: 590 NEKNCVGCFYCKKVCPYGAIE-EKEIRDRQGNLIRVVAYVNPGVCGGCGTCQATCPSKSV 648

Query: 119 VEGPNFEFATETRQELYYDKERL 141
                 E    T +++    E L
Sbjct: 649 ------ELDGYTDEQIIAMIEAL 665


>gi|78221282|ref|YP_383029.1| sigma-54 dependent trancsriptional regulator [Geobacter
           metallireducens GS-15]
 gi|78192537|gb|ABB30304.1| sigma54 specific transcriptional regulator, Fis family [Geobacter
           metallireducens GS-15]
          Length = 756

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 30/91 (32%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E+C  C  C   CP +AI +                +I + +CI CG C   CP  A   
Sbjct: 9   EKCRKCYCCVRSCPVKAIKVAK-----------SYTEIIVDRCIGCGNCLSNCPQQA--- 54

Query: 121 GPNFEFATETRQELYYDK----ERLLNNGDR 147
                       ++  DK    E+LL++G+ 
Sbjct: 55  ------------KMVADKVGVTEKLLSSGEE 73


>gi|89896715|ref|YP_520202.1| NADH dehydrogenase I chain G [Desulfitobacterium hafniense Y51]
 gi|89336163|dbj|BAE85758.1| NADH dehydrogenase I chain G [Desulfitobacterium hafniense Y51]
          Length = 378

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 7/87 (8%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYD 97
           E+            LR       +CI C  C   C   Q  ++    +    ++    +D
Sbjct: 154 ERRELPLDDSNPFILR----DPNKCILCGKCVRACEEIQGRSVLDFFKRGFDSQVGPAFD 209

Query: 98  IDMIK--CIYCGLCQEACPVDAIVEGP 122
           +   +  C++CG C   CPV A+VE  
Sbjct: 210 VPYSESECVFCGSCVSVCPVGALVEKK 236


>gi|148265659|ref|YP_001232365.1| molybdopterin oxidoreductase [Geobacter uraniireducens Rf4]
 gi|146399159|gb|ABQ27792.1| molybdopterin oxidoreductase [Geobacter uraniireducens Rf4]
          Length = 843

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 21/66 (31%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            +   RCI C+ C  +                        D   + C +CG C  ACP  
Sbjct: 140 ESDPNRCILCEKCVKVDHEIVGCDAIAVVNRGEATIIDTIDGKPLNCEFCGNCVAACPTG 199

Query: 117 AIVEGP 122
            ++  P
Sbjct: 200 TLISKP 205


>gi|257467682|ref|ZP_05631778.1| putative [Fe] hydrogenase, electron-transfer subunit [Fusobacterium
           ulcerans ATCC 49185]
 gi|317061976|ref|ZP_07926461.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium ulcerans ATCC
           49185]
 gi|313687652|gb|EFS24487.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium ulcerans ATCC
           49185]
          Length = 594

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 10/62 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            +  ++CI C  C  +CP  AIT     R            ID   CI CG C E C   
Sbjct: 540 YSITDKCIGCTACARVCPIDAITGTVKHRHE----------IDNEICIKCGACYETCKFG 589

Query: 117 AI 118
           AI
Sbjct: 590 AI 591



 Score = 35.1 bits (79), Expect = 3.1,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 16/42 (38%)

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
                RC  G  + +       KCI C  C   CP+DAI   
Sbjct: 523 HVVDKRCAAGACQKLITYSITDKCIGCTACARVCPIDAITGT 564


>gi|237736261|ref|ZP_04566742.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium
           mortiferum ATCC 9817]
 gi|229421609|gb|EEO36656.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium
           mortiferum ATCC 9817]
          Length = 436

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 29/92 (31%), Gaps = 9/92 (9%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEE---RCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
           E+        G  AL +          CI C  C   CP   +      R     +    
Sbjct: 338 EEAPVIKGTSGLLALTKEETNPYKTRPCIGCGKCVEACPMG-LEPLMFARLASFEQWEQL 396

Query: 96  YDIDMIKCIYCGLCQEACP-----VDAIVEGP 122
              +++ CI CG C   CP      +AI  G 
Sbjct: 397 GQYNLMDCIECGSCAYICPANRPLTEAIKIGK 428


>gi|254168362|ref|ZP_04875207.1| radical SAM domain protein, putative [Aciduliprofundum boonei T469]
 gi|289595846|ref|YP_003482542.1| glycyl-radical enzyme activating protein family [Aciduliprofundum
           boonei T469]
 gi|197622643|gb|EDY35213.1| radical SAM domain protein, putative [Aciduliprofundum boonei T469]
 gi|289533633|gb|ADD07980.1| glycyl-radical enzyme activating protein family [Aciduliprofundum
           boonei T469]
          Length = 303

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 10/60 (16%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            +CI C  C   CP + I  +     H          I+  KC YCG+C E CP  A+  
Sbjct: 53  YKCIHCYTCVHTCPYKLIYFDDFGAQH----------IERDKCTYCGICTENCPTSALEF 102


>gi|169351344|ref|ZP_02868282.1| hypothetical protein CLOSPI_02124 [Clostridium spiroforme DSM 1552]
 gi|169291566|gb|EDS73699.1| hypothetical protein CLOSPI_02124 [Clostridium spiroforme DSM 1552]
          Length = 254

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 14/73 (19%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           + +P+  E C  C +C   CP  AI  +                    KCI C  C + C
Sbjct: 175 KFHPDTNETCEKCGICVEKCPVHAIDDDCKT--------------ISDKCISCFRCIKVC 220

Query: 114 PVDAIVEGPNFEF 126
           P+ A     + E+
Sbjct: 221 PLHAKNMDHDKEY 233


>gi|38569315|gb|AAR24337.1| reductive dehalogenase homologous protein RdhA7 [Dehalococcoides
           sp. FL2]
          Length = 482

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 9/76 (11%)

Query: 60  EERCIACKLCEAICPAQ---------AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            + C  C +C   CP              + + P  +        + +D+ KC YCG+CQ
Sbjct: 357 NKFCETCGICAEECPFGSLSKGGSSWDHFLSNEPLGNGNAPGFKGWRLDLHKCNYCGICQ 416

Query: 111 EACPVDAIVEGPNFEF 126
            ACP +++        
Sbjct: 417 SACPFNSVDNSWVHSL 432


>gi|19073919|gb|AAL84925.1|AF403179_2 o-chlorophenol reductive dehalogenase [Desulfitobacterium
           chlororespirans]
          Length = 456

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/125 (19%), Positives = 40/125 (32%), Gaps = 23/125 (18%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG-- 89
            T + P E                    ++ C  C  C   CP +AIT +      +G  
Sbjct: 321 VTTDLPLEPDKP-----------IDFGLQDFCRICGKCAENCPGEAITTDRDHVEFNGYL 369

Query: 90  -----TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE--FATETRQELYYDKERLL 142
                 ++   +     +   CG C + CP ++  +    E      +R E+      LL
Sbjct: 370 RWNSDMKKCAVFRTTNEEGSSCGRCMKVCPWNSKEDSWFHEAGLWIGSRGEMA---SSLL 426

Query: 143 NNGDR 147
            N D 
Sbjct: 427 KNIDD 431


>gi|59714145|ref|YP_206920.1| pyruvate formate lyase activating enzyme [Vibrio fischeri ES114]
 gi|59482393|gb|AAW88032.1| predicted pyruvate formate lyase activating enzyme [Vibrio fischeri
           ES114]
          Length = 303

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 8/60 (13%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
             P+    C  C  C A CP  A+T +  P              +   C  C  C + CP
Sbjct: 51  HNPHTINHCDHCGDCVAHCPTNALTFDDSPSPKVIW--------NEPLCTQCDKCIDVCP 102


>gi|85860881|ref|YP_463083.1| heterodisulfide reductase subunit A [Syntrophus aciditrophicus SB]
 gi|85723972|gb|ABC78915.1| heterodisulfide reductase, subunit A [Syntrophus aciditrophicus SB]
          Length = 943

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 7/64 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            EE+C++C  C  +C   AI     PR         R  ++ + C   G+C   CP  A+
Sbjct: 860 DEEKCVSCGACITVCSYGAIDFYESPRG-------RRARVNPVLCKGDGVCNTVCPTSAV 912

Query: 119 VEGP 122
               
Sbjct: 913 SLKH 916



 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 10/19 (52%), Positives = 10/19 (52%)

Query: 98  IDMIKCIYCGLCQEACPVD 116
           I   KC  CG C E CPV 
Sbjct: 22  IIEDKCTGCGTCTEYCPVQ 40


>gi|85710648|ref|ZP_01041712.1| putative oxidoreductase, Fe-S subunit [Erythrobacter sp. NAP1]
 gi|85687826|gb|EAQ27831.1| putative oxidoreductase, Fe-S subunit [Erythrobacter sp. NAP1]
          Length = 808

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 25/82 (30%), Gaps = 12/82 (14%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100
            S   R       + +    C  C+   C A CP  AI                   I+ 
Sbjct: 653 LSRLDREAGKSFAHLHVPTSCRHCEHPHCMADCPPNAIQRGPDGEVS----------INA 702

Query: 101 IKCIYCGLCQEACPVDAIVEGP 122
             CI CG C+  CP   I   P
Sbjct: 703 ETCIGCGNCKSNCPYGVIRMDP 724



 Score = 42.4 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 5/71 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL--CQEACPVD 116
            E+ CI C  CE  C   A   E   R      ++  +      C +C    C   CP +
Sbjct: 632 DEKLCIGCDNCERAC---ADAHEGLSRLDREAGKSFAHLHVPTSCRHCEHPHCMADCPPN 688

Query: 117 AIVEGPNFEFA 127
           AI  GP+ E +
Sbjct: 689 AIQRGPDGEVS 699



 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 28/113 (24%), Gaps = 28/113 (24%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP-------- 84
              +P       P               E CI C  C++ CP   I ++  P        
Sbjct: 675 HCEHPHCMADCPPNAIQRGPDGEVSINAETCIGCGNCKSNCPYGVIRMDPVPPKKPSLLS 734

Query: 85  -----------RCHDGTRRTVRYDIDMIKCIYCGL---------CQEACPVDA 117
                            R++        K I C +         C  ACP  A
Sbjct: 735 WLFFGSGPGPGEASYSWRKSHGDPDLAKKAIKCDMCAGIDGGPACVRACPTGA 787


>gi|313157089|gb|EFR56519.1| ferredoxin [Alistipes sp. HGB5]
          Length = 361

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 27/86 (31%), Gaps = 11/86 (12%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            +P  +         +         +  CI C  C+ +C   AITI +            
Sbjct: 193 KWPKNRAVYVSCVSKDKGAVVMKACKAGCIGCGKCQKVCAFDAITIANNLAY-------- 244

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVE 120
              ID  KC  C  C   CP  AI  
Sbjct: 245 ---IDPQKCKLCRKCVNECPTGAIRL 267



 Score = 38.5 bits (88), Expect = 0.27,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 9/60 (15%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+    C   C   AI +                ++D  KC  CG C +ACP   I    
Sbjct: 142 CLGFGDCVVSCAFDAIRMNPETGLP---------EVDPDKCTACGACVKACPKMIIELRK 192



 Score = 38.5 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 27/90 (30%), Gaps = 8/90 (8%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD--------GTRRTVRY 96
              R            ++C AC  C   CP   I +      +           +  V  
Sbjct: 155 DAIRMNPETGLPEVDPDKCTACGACVKACPKMIIELRKKWPKNRAVYVSCVSKDKGAVVM 214

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
                 CI CG CQ+ C  DAI    N  +
Sbjct: 215 KACKAGCIGCGKCQKVCAFDAITIANNLAY 244


>gi|257468710|ref|ZP_05632804.1| sulfite reductase, subunit C [Fusobacterium ulcerans ATCC 49185]
 gi|317062965|ref|ZP_07927450.1| sulfite reductase [Fusobacterium ulcerans ATCC 49185]
 gi|313688641|gb|EFS25476.1| sulfite reductase [Fusobacterium ulcerans ATCC 49185]
          Length = 323

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 26/83 (31%), Gaps = 8/83 (9%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100
           G       G   +       +RC+ C+ C   C + ++   S                + 
Sbjct: 150 GKARMHDFGIIGMTEPQYDPDRCVNCQACVKGCKSLSVNALSVENYKIVR--------NT 201

Query: 101 IKCIYCGLCQEACPVDAIVEGPN 123
            KCI CG+C   CP  A      
Sbjct: 202 EKCIGCGVCITKCPTRAFTRSKE 224


>gi|253583178|ref|ZP_04860376.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium varium ATCC
           27725]
 gi|251833750|gb|EES62313.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium varium ATCC
           27725]
          Length = 594

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 10/62 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            +  ++CI C  C  +CP  AIT     R            I+   CI CG C E C   
Sbjct: 540 YSITDKCIGCTACARVCPIDAITGTVKHRHE----------INNEICIKCGACYETCKFG 589

Query: 117 AI 118
           AI
Sbjct: 590 AI 591



 Score = 35.1 bits (79), Expect = 3.5,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 16/42 (38%)

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
                RC  G  + +       KCI C  C   CP+DAI   
Sbjct: 523 HVVDKRCAAGACQKLITYSITDKCIGCTACARVCPIDAITGT 564


>gi|238026514|ref|YP_002910745.1| hypothetical protein bglu_1g08580 [Burkholderia glumae BGR1]
 gi|237875708|gb|ACR28041.1| Hypothetical protein bglu_1g08580 [Burkholderia glumae BGR1]
          Length = 984

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 21/69 (30%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     +G                  +C+ CG C  
Sbjct: 188 YFSYDPSKCIVCNRCVRACEETQGTFALTIAGRGFESRVAAGESGTFMESECVSCGACVA 247

Query: 112 ACPVDAIVE 120
           ACP   + E
Sbjct: 248 ACPTATLQE 256


>gi|225175901|ref|ZP_03729893.1| aldo/keto reductase [Dethiobacter alkaliphilus AHT 1]
 gi|225168489|gb|EEG77291.1| aldo/keto reductase [Dethiobacter alkaliphilus AHT 1]
          Length = 315

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 11/60 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C  C  C   C   AI++                 I+   CI CG C+++CP   I  
Sbjct: 266 KFCKGCGNCVESCEQGAISMVDEKAY-----------IEHSNCILCGYCRKSCPHSMIRI 314



 Score = 34.7 bits (78), Expect = 4.3,   Method: Composition-based stats.
 Identities = 8/21 (38%), Positives = 9/21 (42%)

Query: 103 CIYCGLCQEACPVDAIVEGPN 123
           C  CG C E+C   AI     
Sbjct: 268 CKGCGNCVESCEQGAISMVDE 288


>gi|148556137|ref|YP_001263719.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Sphingomonas wittichii RW1]
 gi|148501327|gb|ABQ69581.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Sphingomonas wittichii RW1]
          Length = 596

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 30/105 (28%), Gaps = 20/105 (19%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
            +  S +   R  +   +       CI C  C  ICP   IT        +   R     
Sbjct: 479 DDPRSWAETQRCLNCDVQTVFTRTLCIECDACVDICPTDCITFTVNGDEAELRPRLKAPA 538

Query: 98  IDMIK--------------------CIYCGLCQEACPVDAIVEGP 122
            +  +                    C++CGLC E CP  A     
Sbjct: 539 TNPDQALYVSSTLPTGRVLVKDEDVCLHCGLCAERCPTGAWDMQK 583


>gi|114777067|ref|ZP_01452087.1| electron transport complex protein RnfB [Mariprofundus ferrooxydans
           PV-1]
 gi|114552588|gb|EAU55048.1| electron transport complex protein RnfB [Mariprofundus ferrooxydans
           PV-1]
          Length = 194

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 22/60 (36%), Gaps = 10/60 (16%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C LC   CP  AI                 + +    C  C LC E CPVD I  
Sbjct: 111 DECIGCTLCIKACPVDAIIGAPKQ----------YHTVLADHCTGCELCVEPCPVDCIDM 160



 Score = 35.1 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/25 (52%), Positives = 17/25 (68%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           +   +CI C LC +ACPVDAI+  P
Sbjct: 108 VREDECIGCTLCIKACPVDAIIGAP 132


>gi|126697867|ref|YP_001086764.1| putative iron-sulfur-binding protein [Clostridium difficile 630]
 gi|254973963|ref|ZP_05270435.1| putative iron-sulfur-binding protein [Clostridium difficile
           QCD-66c26]
 gi|255091349|ref|ZP_05320827.1| putative iron-sulfur-binding protein [Clostridium difficile CIP
           107932]
 gi|255099467|ref|ZP_05328444.1| putative iron-sulfur-binding protein [Clostridium difficile
           QCD-63q42]
 gi|255305324|ref|ZP_05349496.1| putative iron-sulfur-binding protein [Clostridium difficile ATCC
           43255]
 gi|255313007|ref|ZP_05354590.1| putative iron-sulfur-binding protein [Clostridium difficile
           QCD-76w55]
 gi|255515766|ref|ZP_05383442.1| putative iron-sulfur-binding protein [Clostridium difficile
           QCD-97b34]
 gi|255648859|ref|ZP_05395761.1| putative iron-sulfur-binding protein [Clostridium difficile
           QCD-37x79]
 gi|260682075|ref|YP_003213360.1| putative iron-sulfur-binding protein [Clostridium difficile CD196]
 gi|260685673|ref|YP_003216806.1| putative iron-sulfur-binding protein [Clostridium difficile R20291]
 gi|306518976|ref|ZP_07405323.1| putative iron-sulfur-binding protein [Clostridium difficile
           QCD-32g58]
 gi|115249304|emb|CAJ67117.1| putative iron-sulfur-binding protein [Clostridium difficile]
 gi|260208238|emb|CBA60619.1| putative iron-sulfur-binding protein [Clostridium difficile CD196]
 gi|260211689|emb|CBE01977.1| putative iron-sulfur-binding protein [Clostridium difficile R20291]
          Length = 357

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 11/63 (17%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ++C+ C  C   CP +AI+I                 ID   C  CG C   CP  A+  
Sbjct: 195 KKCVGCGKCVNSCPTKAISIVDKKAV-----------IDSDVCYGCGECPTVCPTRAVTI 243

Query: 121 GPN 123
              
Sbjct: 244 QWE 246


>gi|78356159|ref|YP_387608.1| heterodisulfide reductase, iron-sulfur-binding subunit
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78218564|gb|ABB37913.1| putative adenylylsulfate reductase-associated electron transfer
           protein QmoB [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 756

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 21/68 (30%), Gaps = 10/68 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L        RC  CK C   CP  A+  +                 +  +C  CG C  A
Sbjct: 539 LSYPIFNFVRCTQCKRCTEECPFGALDDDEKGTPKP----------NFSRCRRCGTCMGA 588

Query: 113 CPVDAIVE 120
           CP   I  
Sbjct: 589 CPERVISF 596


>gi|159903840|ref|YP_001551184.1| ferredoxin [Prochlorococcus marinus str. MIT 9211]
 gi|159889016|gb|ABX09230.1| Ferredoxin [Prochlorococcus marinus str. MIT 9211]
          Length = 341

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 22/64 (34%), Gaps = 14/64 (21%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C+ C LC  +CP  AI                  +I    CI CG C+  CP  A   
Sbjct: 101 DDCVKCNLCIPVCPTDAI--------------PSTLEIVDSLCIGCGNCEAVCPPAASAI 146

Query: 121 GPNF 124
               
Sbjct: 147 TYRH 150



 Score = 39.3 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 12/36 (33%), Positives = 13/36 (36%)

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
                   VR  I    C+ C LC   CP DAI   
Sbjct: 86  VGMPGDHHVRKAIITDDCVKCNLCIPVCPTDAIPST 121


>gi|116750130|ref|YP_846817.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB]
 gi|116699194|gb|ABK18382.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB]
          Length = 603

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 10/66 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L ++   EE C  C LC   CPA A++ E                ID+ KCI C  C  A
Sbjct: 547 LIKFEVNEENCQKCGLCFKACPAGAVSWEKKQTAK----------IDVSKCIKCRSCILA 596

Query: 113 CPVDAI 118
           C  +AI
Sbjct: 597 CRFNAI 602



 Score = 33.9 bits (76), Expect = 8.1,   Method: Composition-based stats.
 Identities = 9/38 (23%), Positives = 17/38 (44%)

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
                      ++++++   C  CGLC +ACP  A+  
Sbjct: 537 KECPARVCVDLIKFEVNEENCQKCGLCFKACPAGAVSW 574


>gi|307352732|ref|YP_003893783.1| pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta
           [Methanoplanus petrolearius DSM 11571]
 gi|307155965|gb|ADN35345.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Methanoplanus petrolearius DSM 11571]
          Length = 80

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 14/65 (21%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E C  C  CE  CP   I+ E              ++ID+  C  CG+C + CP  AI
Sbjct: 29  DRELCNKCGNCERFCPDGTISKE--------------FEIDLEFCKGCGICADVCPKKAI 74

Query: 119 VEGPN 123
                
Sbjct: 75  KMVRE 79


>gi|295697039|ref|YP_003590277.1| Polysulphide reductase NrfD [Bacillus tusciae DSM 2912]
 gi|295412641|gb|ADG07133.1| Polysulphide reductase NrfD [Bacillus tusciae DSM 2912]
          Length = 519

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/73 (31%), Positives = 25/73 (34%), Gaps = 22/73 (30%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG---------LC 109
             E CI CK C A CP  AI I                     KC +C           C
Sbjct: 98  DREVCIGCKACMAACPYDAIYIHPDIHSA-------------EKCNFCAHRIDQGLEPAC 144

Query: 110 QEACPVDAIVEGP 122
              CPV+AIV G 
Sbjct: 145 VAVCPVEAIVVGD 157



 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 20/60 (33%), Gaps = 5/60 (8%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
             C  CE         +   P      R     D D   CI C  C  ACP DAI   P+
Sbjct: 68  TRCNQCE-----DPPCVAICPVSAMFQRPDGIVDFDREVCIGCKACMAACPYDAIYIHPD 122



 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 32/103 (31%), Gaps = 17/103 (16%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA-----ITIESGPRCHDGTR 91
           P E+                   ++ CI C  C   C ++      +      +   G  
Sbjct: 8   PRERPPVK---------WGKVFNQDACIGCHACSTACKSEHLVPLGVNRTYVKQVEVGIY 58

Query: 92  RTVRYDIDMIKCIYCGL--CQEACPVDAIVEGPNFEFATETRQ 132
             V  +  + +C  C    C   CPV A+ + P+       R+
Sbjct: 59  PEVSREFQITRCNQCEDPPCVAICPVSAMFQRPD-GIVDFDRE 100


>gi|294102514|ref|YP_003554372.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Aminobacterium colombiense DSM 12261]
 gi|293617494|gb|ADE57648.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Aminobacterium colombiense DSM 12261]
          Length = 622

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 9/71 (12%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R +          E+CI CK C        +  +   +            ID   C+ CG
Sbjct: 555 REKQDKIPMKVDPEKCIGCKFCINFFNCPGLVFDEAGKKAY---------IDERFCVSCG 605

Query: 108 LCQEACPVDAI 118
           +C + CP  AI
Sbjct: 606 VCSKVCPHGAI 616


>gi|288559764|ref|YP_003423250.1| ATPase RIL [Methanobrevibacter ruminantium M1]
 gi|288542474|gb|ADC46358.1| ATPase RIL [Methanobrevibacter ruminantium M1]
          Length = 591

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 1/60 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +++C   K C  +C      +           +T +  I    C  CG+C   CP  AI
Sbjct: 8   DKDKCQP-KKCNTVCMHYCPGVRMDEDTIVIDEKTKKPLISEELCSGCGICTNRCPFGAI 66


>gi|222054720|ref|YP_002537082.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           FRC-32]
 gi|221564009|gb|ACM19981.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           FRC-32]
          Length = 55

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 11/64 (17%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + CI C  C+  CP  AI+ E   R            I    CI CG C + CP
Sbjct: 1   MAHKISDECINCGACDESCPVNAISEEGSKR-----------TISADTCIDCGACVDTCP 49

Query: 115 VDAI 118
           V AI
Sbjct: 50  VSAI 53


>gi|189219240|ref|YP_001939881.1| NAD-dependent formate dehydrogenase alpha subunit
           [Methylacidiphilum infernorum V4]
 gi|161075753|gb|ABX56624.1| formate dehydrogenase alpha subunit [Methylacidiphilum infernorum
           V4]
 gi|189186098|gb|ACD83283.1| NAD-dependent formate dehydrogenase alpha subunit
           [Methylacidiphilum infernorum V4]
          Length = 967

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 3/74 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV---RYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T+    R             ++    +C+ CG C +
Sbjct: 189 YFSFDPAKCIVCFRCVRACDEIQGTLALTARRRGFDSVITPGPTHEFFSSECVSCGACVK 248

Query: 112 ACPVDAIVEGPNFE 125
           ACP  A++E    E
Sbjct: 249 ACPTAALIENTVIE 262


>gi|159905810|ref|YP_001549472.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C6]
 gi|159887303|gb|ABX02240.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           maripaludis C6]
          Length = 80

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 8/69 (11%)

Query: 60  EERCIACKLCEAICPAQAITIE--------SGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            E+C  C  C   CP  A   +        S  +        V   ++   C  CG C E
Sbjct: 8   PEKCHGCGNCVVACPVNAQDPDVYGGKGPSSDEKLIMRVENGVVSIVNGDLCGGCGACIE 67

Query: 112 ACPVDAIVE 120
           ACPVDAI  
Sbjct: 68  ACPVDAIKL 76



 Score = 33.9 bits (76), Expect = 7.7,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 14/25 (56%)

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDA 117
             + ++   KC  CG C  ACPV+A
Sbjct: 1   MYKLEVYPEKCHGCGNCVVACPVNA 25


>gi|120602429|ref|YP_966829.1| hydrogenases, Fe-only [Desulfovibrio vulgaris DP4]
 gi|120562658|gb|ABM28402.1| hydrogenase, Fe-only [Desulfovibrio vulgaris DP4]
          Length = 606

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 9/85 (10%)

Query: 59  GEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
              +CI C  C A+C       A+ +       +   R  R       C+ CG C   CP
Sbjct: 148 DMGKCIRCLRCVAVCRNVQGVDALVVTGNGIGTEIGLRHNRSQ-SASDCVGCGQCTLVCP 206

Query: 115 VDAIVEGPNFEFATETRQELYYDKE 139
           V A+    + E       +  YD E
Sbjct: 207 VGALAGRDDVERVI----DYLYDPE 227


>gi|90412295|ref|ZP_01220300.1| pyruvate ferredoxin/flavodoxin oxidoreductase family protein
           [Photobacterium profundum 3TCK]
 gi|90326786|gb|EAS43179.1| pyruvate ferredoxin/flavodoxin oxidoreductase family protein
           [Photobacterium profundum 3TCK]
          Length = 1190

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/110 (20%), Positives = 31/110 (28%), Gaps = 29/110 (26%)

Query: 58  NGEERCIACKLCEAICPAQ--------------AITIESGPRCHDGTRRTVRYDI--DMI 101
              E CI C  C  ICP                A                + Y I     
Sbjct: 689 WDSELCIQCGNCSFICPHATIRAKLYRKDALDTAPENFKYADVAARGFPDMAYSIQVYAE 748

Query: 102 KCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
            C+ C LC +ACP                R+ L     +++   D WE +
Sbjct: 749 DCMGCTLCVDACPAHCA--------TDSNRKAL-----QMVPAVDEWEKQ 785


>gi|134300798|ref|YP_001114294.1| glycyl-radical activating family protein [Desulfotomaculum reducens
           MI-1]
 gi|134053498|gb|ABO51469.1| glycyl-radical enzyme activating protein family [Desulfotomaculum
           reducens MI-1]
          Length = 297

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 19/61 (31%), Gaps = 15/61 (24%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            +RCI C  C   C  QAI                   I   +C  CG C   CP  A  
Sbjct: 52  PDRCIGCGDCVETCVNQAILPGG---------------IHKERCRRCGQCAAVCPTLARE 96

Query: 120 E 120
            
Sbjct: 97  M 97



 Score = 35.5 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 19/71 (26%), Gaps = 8/71 (11%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
            R   G    I  K C   C          P                 +CI CG C E C
Sbjct: 14  IRDGPGIRTTIFFKGCPLKCLWCHNPESQDPEPQLMF--------WPDRCIGCGDCVETC 65

Query: 114 PVDAIVEGPNF 124
              AI+ G   
Sbjct: 66  VNQAILPGGIH 76


>gi|71274587|ref|ZP_00650875.1| Electron transport complex, RnfABCDGE type, B subunit [Xylella
           fastidiosa Dixon]
 gi|71898126|ref|ZP_00680312.1| Electron transport complex, RnfABCDGE type, B subunit [Xylella
           fastidiosa Ann-1]
 gi|170730849|ref|YP_001776282.1| ferredoxin [Xylella fastidiosa M12]
 gi|71164319|gb|EAO14033.1| Electron transport complex, RnfABCDGE type, B subunit [Xylella
           fastidiosa Dixon]
 gi|71732100|gb|EAO34156.1| Electron transport complex, RnfABCDGE type, B subunit [Xylella
           fastidiosa Ann-1]
 gi|167965642|gb|ACA12652.1| ferredoxin II [Xylella fastidiosa M12]
          Length = 139

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 23/66 (34%), Gaps = 10/66 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI C  C   CP  AI   +             + +    C  C LC  ACPVD
Sbjct: 83  WIVEADCIGCTKCIQACPVDAIIGGAK----------HMHTVIAALCTGCELCVPACPVD 132

Query: 117 AIVEGP 122
            I   P
Sbjct: 133 CIELHP 138


>gi|304314087|ref|YP_003849234.1| pyruvate synthase, subunit D [Methanothermobacter marburgensis str.
           Marburg]
 gi|313104161|sp|P80903|PORD_METTM RecName: Full=Pyruvate synthase subunit porD; AltName:
           Full=Pyruvate oxidoreductase delta chain; Short=POR;
           AltName: Full=Pyruvic-ferredoxin oxidoreductase subunit
           delta
 gi|302587546|gb|ADL57921.1| pyruvate synthase, subunit D [Methanothermobacter marburgensis str.
           Marburg]
          Length = 81

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 32/85 (37%), Gaps = 14/85 (16%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E GST     G     +    +++CI C  C   CP   I  E              ++I
Sbjct: 10  EPGSTRKNKTGSWRTFKPFLDKDKCIDCDNCILFCPEGCIDKE--------------HEI 55

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPN 123
           D   C  CG+C E CPV AI     
Sbjct: 56  DYDYCKGCGICAEECPVKAIKMERE 80


>gi|288959752|ref|YP_003450092.1| formate dehydrogenase, alpha subunit [Azospirillum sp. B510]
 gi|288912060|dbj|BAI73548.1| formate dehydrogenase, alpha subunit [Azospirillum sp. B510]
          Length = 951

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 24/75 (32%), Gaps = 3/75 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T      G           +      +C+ CG C +
Sbjct: 159 YFTFDASKCIVCSRCVRACQETQGTFALTIDGRGFASSVSPGAKESFMDSECVSCGACVQ 218

Query: 112 ACPVDAIVEGPNFEF 126
           ACP   + E    E+
Sbjct: 219 ACPTATLTEKSIIEY 233


>gi|242398680|ref|YP_002994104.1| ATPase, ParA/MinD family, containing ferredoxin domains
           [Thermococcus sibiricus MM 739]
 gi|242265073|gb|ACS89755.1| ATPase, ParA/MinD family, containing ferredoxin domains
           [Thermococcus sibiricus MM 739]
          Length = 295

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 11/58 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
             E CI C +C   CP   I I               Y ++ + C  CG+C+  CPV+
Sbjct: 67  NSETCIKCGICAERCPYDCIKILDE-----------NYVVNELTCEGCGVCRLVCPVN 113



 Score = 38.2 bits (87), Expect = 0.44,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 13/30 (43%)

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
               I+   CI CG+C E CP D I     
Sbjct: 62  KVAKINSETCIKCGICAERCPYDCIKILDE 91


>gi|296109830|ref|YP_003616779.1| hypothetical protein Metin_1162 [Methanocaldococcus infernus ME]
 gi|295434644|gb|ADG13815.1| hypothetical protein Metin_1162 [Methanocaldococcus infernus ME]
          Length = 160

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 63  CIACKLCEAICPAQAITIESGP--RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           CI C+ C  +CP +AI +      +  +   +     I+  KC+YC  C + CPV ++ 
Sbjct: 51  CIGCEGCANVCPTKAIEMVKVEPVKITENYVKDKVPKINYEKCVYCFYCHDFCPVFSVF 109



 Score = 34.7 bits (78), Expect = 4.1,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 17/51 (33%)

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           +  +  +T +   +     +  +   +    CI C  C   CP  AI    
Sbjct: 20  LLGSGCVTDKEMRKKILEGKIELPKSVLEELCIGCEGCANVCPTKAIEMVK 70


>gi|224371439|ref|YP_002605603.1| putative ferredoxin [Desulfobacterium autotrophicum HRM2]
 gi|223694156|gb|ACN17439.1| putative ferredoxin [Desulfobacterium autotrophicum HRM2]
          Length = 122

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 12/87 (13%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                +E C  C+ C   C  +AI++E                ID  +CI CG+C + CP
Sbjct: 1   MPWINKELCTGCQTCIDECSVEAISMEEDIAF-----------IDEDECIRCGVCHDVCP 49

Query: 115 VDAIVEGPNFEFATETRQELYYDKERL 141
            +A+          E +  L + K+ L
Sbjct: 50  ENAVRHDGE-RIPEEVQSNLIWAKKLL 75


>gi|224368798|ref|YP_002602959.1| FAD-dependent oxidoreductase (4Fe-4S ferredoxin cluster binding
           protein) [Desulfobacterium autotrophicum HRM2]
 gi|223691514|gb|ACN14797.1| FAD-dependent oxidoreductase (4Fe-4S ferredoxin cluster binding
           protein) [Desulfobacterium autotrophicum HRM2]
          Length = 689

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 20/63 (31%), Gaps = 10/63 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C+    C   C   A+T+                 +D  KC  CG C+ ACP   I
Sbjct: 134 CNIGCLGLGTCVKACLFGALTMGKD----------SLPKVDPEKCTGCGACERACPKHII 183

Query: 119 VEG 121
              
Sbjct: 184 RLT 186


>gi|170760276|ref|YP_001787576.1| iron-sulfur cluster-binding protein [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169407265|gb|ACA55676.1| iron-sulfur cluster-binding protein [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 272

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 54/153 (35%), Gaps = 31/153 (20%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRY--PN 58
           M I R     ++ K         ++  F    T   P+ K       +G+    R   P 
Sbjct: 144 MDIVREFAGEIYTKIINEKI---IKTAFVKGNT---PYRKYYMPKDEKGQPIDIRKVKPK 197

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI CKLC  +CP  +I  E   + +               CI C  C + CPV+A 
Sbjct: 198 TNNNCIDCKLCANLCPMGSIDFEDVIKLN-------------GICIKCCACIKKCPVEA- 243

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
                F+ +      L + KE  L N  R+  E
Sbjct: 244 ---KYFDDSGY----LKHKKE--LENNFRYRKE 267


>gi|119505633|ref|ZP_01627704.1| electron transport complex protein RnfC [marine gamma
           proteobacterium HTCC2080]
 gi|119458576|gb|EAW39680.1| electron transport complex protein RnfC [marine gamma
           proteobacterium HTCC2080]
          Length = 513

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 2/93 (2%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + CI C LC   CPA  +  +         +  +     +  CI CG C   CP   I
Sbjct: 367 DAQACIRCGLCAEACPASLLPQQLYWYARAKDQEQLE-RHHLADCIECGACSWVCPSH-I 424

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
                +  A    +E   +K R   + DR+E+ 
Sbjct: 425 PLVQYYRAAKGMIKESKTEKIRSDRSRDRFEAR 457


>gi|119475816|ref|ZP_01616168.1| formate dehydrogenase, alpha subunit [marine gamma proteobacterium
           HTCC2143]
 gi|119450443|gb|EAW31677.1| formate dehydrogenase, alpha subunit [marine gamma proteobacterium
           HTCC2143]
          Length = 960

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 23/81 (28%), Gaps = 3/81 (3%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T      G                   C+ CG C +
Sbjct: 172 YFTFDASKCIVCSRCVRACEEVQGTFALTIDGKGFDSVVAAGQAQSFMESDCVSCGACIQ 231

Query: 112 ACPVDAIVEGPNFEFATETRQ 132
           ACP   ++E    +     R 
Sbjct: 232 ACPTSTLMENTVIDQGQPQRS 252


>gi|20093010|ref|NP_619085.1| coenzyme F420-dependent oxidoreductase [Methanosarcina acetivorans
           C2A]
 gi|19918329|gb|AAM07565.1| coenzyme F420-dependent oxidoreductase [Methanosarcina acetivorans
           C2A]
          Length = 345

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 5/76 (6%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           EK   S  +     L+        C  C  C A+CPA A+  E+G        ++  Y  
Sbjct: 3   EKKPISKSYLD---LKSKVWDTGLCSGCGACVAVCPADALYFETG--GDSTHPKSNNYCK 57

Query: 99  DMIKCIYCGLCQEACP 114
             +  + CG C E CP
Sbjct: 58  AAVDDVPCGACYEVCP 73



 Score = 34.3 bits (77), Expect = 6.0,   Method: Composition-based stats.
 Identities = 8/18 (44%), Positives = 9/18 (50%)

Query: 103 CIYCGLCQEACPVDAIVE 120
           C  CG C   CP DA+  
Sbjct: 24  CSGCGACVAVCPADALYF 41


>gi|126451593|ref|YP_001067208.1| formate dehydrogenase, alpha subunit [Burkholderia pseudomallei
           1106a]
 gi|167846784|ref|ZP_02472292.1| formate dehydrogenase, alpha subunit [Burkholderia pseudomallei
           B7210]
 gi|242314359|ref|ZP_04813375.1| formate dehydrogenase, NAD-dependent, alpha subunit [Burkholderia
           pseudomallei 1106b]
 gi|126225235|gb|ABN88775.1| formate dehydrogenase, NAD-dependent, alpha subunit [Burkholderia
           pseudomallei 1106a]
 gi|242137598|gb|EES24000.1| formate dehydrogenase, NAD-dependent, alpha subunit [Burkholderia
           pseudomallei 1106b]
          Length = 984

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 25/85 (29%), Gaps = 10/85 (11%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     +          +        +C+ CG C  
Sbjct: 187 YFSYDPSKCIVCNRCVRACEETQGTFALTIASRGFESRVAASACEAFMDSECVSCGACVA 246

Query: 112 ACPVDAIVE-------GPNFEFATE 129
           ACP   ++E        P  E  T 
Sbjct: 247 ACPTATLIEKSVARLGQPEHEIVTT 271


>gi|323702955|ref|ZP_08114612.1| FAD dependent oxidoreductase [Desulfotomaculum nigrificans DSM 574]
 gi|323532086|gb|EGB21968.1| FAD dependent oxidoreductase [Desulfotomaculum nigrificans DSM 574]
          Length = 1007

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 27/78 (34%), Gaps = 13/78 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR-------YDIDMIKCIY---- 105
               E+CI C  C   CP + +    G          +        Y ID  KC+     
Sbjct: 104 CVDIEKCIGCGACAEKCPVKVVDDFDGGLRKRKAIYKLYAQATPGAYAIDTTKCLKIKNP 163

Query: 106 --CGLCQEACPVDAIVEG 121
             CG C EACP  AI   
Sbjct: 164 KACGKCLEACPAGAINHQ 181



 Score = 42.4 bits (98), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 10/65 (15%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C  C +C   C   A  +           +T   ++  + C  CG C  ACP  A  +  
Sbjct: 942 CKGCGICVEACAYGARVMNE---------QTKVAEVLDVLCQGCGACVAACPSGA-SQQK 991

Query: 123 NFEFA 127
            FE A
Sbjct: 992 GFEKA 996



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 3/32 (9%)

Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
            KCI CG C E CPV  +    +F+     R+
Sbjct: 108 EKCIGCGACAEKCPVKVV---DDFDGGLRKRK 136


>gi|317153653|ref|YP_004121701.1| cobyrinic acid a,c-diamide synthase [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316943904|gb|ADU62955.1| cobyrinic acid a,c-diamide synthase [Desulfovibrio aespoeensis
           Aspo-2]
          Length = 294

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 31/102 (30%), Gaps = 18/102 (17%)

Query: 27  FFKAKTTINYPFEKGSTSPRFRGEHALRRYPN-------GEERCIACKLCEAICPAQAIT 79
            +    T      +      F   +  R  P         E +C  C++C  +C  +AIT
Sbjct: 24  LWDRPVTAVDLDVEEPNLHLFLKPNIHRTDPAYIEIPEADESKCTLCRICSTLCQFKAIT 83

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           +                 I    C  CG C   CP  A+  G
Sbjct: 84  VMGDTLL-----------IFPEMCHGCGGCLAVCPEGALTPG 114


>gi|289193250|ref|YP_003459191.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
 gi|288939700|gb|ADC70455.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
          Length = 80

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 23/69 (33%), Gaps = 7/69 (10%)

Query: 60  EERCIACKLCEAICPAQAITI-------ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
            ERC  C  C   CP  A              +        +   ++   C  CG C E 
Sbjct: 8   PERCHGCGNCVVSCPVNAKDPSVWGGKGPETDKVVMIVEEGLVKVVNQELCGGCGACIEV 67

Query: 113 CPVDAIVEG 121
           CPV+AI   
Sbjct: 68  CPVNAIELT 76


>gi|256830963|ref|YP_003159691.1| methyl-viologen-reducing hydrogenase delta subunit
           [Desulfomicrobium baculatum DSM 4028]
 gi|256580139|gb|ACU91275.1| methyl-viologen-reducing hydrogenase delta subunit
           [Desulfomicrobium baculatum DSM 4028]
          Length = 763

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 21/70 (30%), Gaps = 10/70 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L        RC  CK C   CP  A+  +                 +  +C  CG C  A
Sbjct: 546 LSFPKFNLVRCTQCKRCTEECPFGALDEDEKGNP----------MPNTSRCRRCGTCMGA 595

Query: 113 CPVDAIVEGP 122
           CP   I    
Sbjct: 596 CPERVIYFDN 605


>gi|225628328|ref|ZP_03786362.1| Ferredoxin-2 [Brucella ceti str. Cudo]
 gi|225616174|gb|EEH13222.1| Ferredoxin-2 [Brucella ceti str. Cudo]
          Length = 138

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 13/86 (15%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYD 97
           +        G  +        + CI CK   C  +CP                       
Sbjct: 12  REPPPHPTGGHRSSTMTYVVTDNCIRCKYTDCVEVCPVDCFYEGENMLV----------- 60

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPN 123
           I+  +CI CG+C+  CP +AI     
Sbjct: 61  INPDECIDCGVCEPECPAEAISPDTE 86


>gi|315230976|ref|YP_004071412.1| PUA-PAPS reductase like fusion [Thermococcus barophilus MP]
 gi|315184004|gb|ADT84189.1| PUA-PAPS reductase like fusion [Thermococcus barophilus MP]
          Length = 630

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 9/80 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E+G  +P  R              C+ C +C   C   A++I    R         +  +
Sbjct: 551 EEGIFAPERREGIQAYYLIKRAYECVGCGVCVGRCKENALSINPKTR---------KIVV 601

Query: 99  DMIKCIYCGLCQEACPVDAI 118
           D  +CI+C  C E CP+  I
Sbjct: 602 DYGRCIHCRECMEVCPLLKI 621


>gi|154492926|ref|ZP_02032552.1| hypothetical protein PARMER_02568 [Parabacteroides merdae ATCC
           43184]
 gi|154087231|gb|EDN86276.1| hypothetical protein PARMER_02568 [Parabacteroides merdae ATCC
           43184]
          Length = 301

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 15/89 (16%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ++CI C+ C   CP QA+T+       DG            +C  CG+C E CP  A+  
Sbjct: 50  KKCIGCRTCVEACPEQALTLTPEGIVTDG-----------ARCTLCGICAEVCPAMAMEI 98

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWE 149
                    + + L  + E+ +   DR E
Sbjct: 99  SG----TEYSAEALMKEIEKEIVFMDRSE 123


>gi|154150134|ref|YP_001403752.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Candidatus Methanoregula boonei 6A8]
 gi|153998686|gb|ABS55109.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methanoregula boonei 6A8]
          Length = 390

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/88 (27%), Positives = 30/88 (34%), Gaps = 5/88 (5%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT-IESGPRCHDGTRR 92
            N P E  +    F G+               C  C  ICPA AI      P    G   
Sbjct: 260 RNCPSEAITVEKIFEGDIEFHAEKCPGG----CSTCAEICPANAIYLPSEKPAAEMGHHI 315

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVE 120
                ++   CI CG C  ACP + I+ 
Sbjct: 316 EASIAVNKDYCILCGACVNACPGEDIII 343



 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 7/67 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRC-------HDGTRRTVRYDIDMIKCIYCGLCQE 111
            E +C  C +C  +CP  A+T++   +            +  ++ +I+  KC+ C +C+E
Sbjct: 73  DETKCSYCGVCVIMCPFNALTLKVDNQERLPILEKEGFPQYDMKAEINEEKCVRCTICEE 132

Query: 112 ACPVDAI 118
            CP DAI
Sbjct: 133 VCPRDAI 139



 Score = 41.2 bits (95), Expect = 0.044,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDG-TRRTVRYDIDMIKCIYCGLCQEACPVDA 117
             E C  C +C   CP +AI +        G        D+D  KC YCG+C   CP +A
Sbjct: 32  NSETCTGCGICVDACPEEAIVLGLVGASRRGAINYATPIDVDETKCSYCGVCVIMCPFNA 91

Query: 118 IVE 120
           +  
Sbjct: 92  LTL 94



 Score = 38.9 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
             E +C ACK+C   CP + IT+E         +   +  I    C  C  C   CP +A
Sbjct: 210 WDETKCDACKVCVEACPQECITVEREIVSD---KLDGKVSIVQDNCCTCTWCSRNCPSEA 266

Query: 118 IVEGPNFE 125
           I     FE
Sbjct: 267 ITVEKIFE 274



 Score = 37.0 bits (84), Expect = 0.83,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            A   +   +E+C  C +C A+CP  AI ++      +  +       D  KC  C +C 
Sbjct: 165 KAKTTFTVDKEKCTTCGICGALCP--AIRVKHKEYTAEIGKVEGDVIWDETKCDACKVCV 222

Query: 111 EACPVDAI 118
           EACP + I
Sbjct: 223 EACPQECI 230



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 30/89 (33%), Gaps = 13/89 (14%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE-------------SGPR 85
           E+     +        +    EE+C+ C +CE +CP  AI                    
Sbjct: 100 ERLPILEKEGFPQYDMKAEINEEKCVRCTICEEVCPRDAIDRNVPAYEGTYKGPVAGAKD 159

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                +    + +D  KC  CG+C   CP
Sbjct: 160 RQTALKAKTTFTVDKEKCTTCGICGALCP 188



 Score = 34.3 bits (77), Expect = 5.0,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 14/21 (66%)

Query: 101 IKCIYCGLCQEACPVDAIVEG 121
             C  CG+C +ACP +AIV G
Sbjct: 34  ETCTGCGICVDACPEEAIVLG 54



 Score = 33.9 bits (76), Expect = 8.3,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 9/62 (14%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY-CGLCQEACPVDAI 118
           ++ C  C  C   CP++AIT+E               +    KC   C  C E CP +AI
Sbjct: 249 QDNCCTCTWCSRNCPSEAITVEKIFEGDI--------EFHAEKCPGGCSTCAEICPANAI 300

Query: 119 VE 120
             
Sbjct: 301 YL 302


>gi|147676821|ref|YP_001211036.1| Fe-S-cluster [Pelotomaculum thermopropionicum SI]
 gi|146272918|dbj|BAF58667.1| Fe-S-cluster [Pelotomaculum thermopropionicum SI]
          Length = 153

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 24/60 (40%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              +C  C  CE  C        +  R +    R        + C+ CGLC + CPV+A+
Sbjct: 8   DPSKCTGCHRCEMWCSLTKYGEINPSRSNVYVIRREPAVDVPVVCVQCGLCVDVCPVEAL 67



 Score = 39.3 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 9/70 (12%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           +    C+ C LC  +CP +A+             +T    +D   C  CG C + CP   
Sbjct: 47  DVPVVCVQCGLCVDVCPVEALKRNG---------KTDAVVVDAESCTGCGTCVKVCPYGV 97

Query: 118 IVEGPNFEFA 127
           +      + A
Sbjct: 98  LRIDEETDTA 107


>gi|16755057|gb|AAL26702.1| 68 kDa protein HP68 [Triticum aestivum]
          Length = 604

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           K C   C      +++G  C + +       I    CI CG+C + CP DAI    
Sbjct: 19  KKCRQECKKSCPVVKTGKLCIEVSPVAKLAFISEELCIGCGICVKKCPFDAIEIIN 74


>gi|57234100|ref|YP_181885.1| reductive dehalogenase, putative [Dehalococcoides ethenogenes 195]
 gi|57224548|gb|AAW39605.1| reductive dehalogenase, putative [Dehalococcoides ethenogenes 195]
          Length = 532

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 12/69 (17%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC----------IY 105
             N  E C  CKLC  +CP QAI+ +  P+     +R  R++ ++ KC          + 
Sbjct: 390 DFNLAEFCSRCKLCAQVCPTQAISYDDKPKFEIYGQR--RFNTNLAKCRDGWNLGAGPMG 447

Query: 106 CGLCQEACP 114
           C  C   CP
Sbjct: 448 CRACISVCP 456



 Score = 35.5 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 2/31 (6%)

Query: 103 CIYCGLCQEACPVDAIVEG--PNFEFATETR 131
           C  C LC + CP  AI     P FE   + R
Sbjct: 397 CSRCKLCAQVCPTQAISYDDKPKFEIYGQRR 427


>gi|83590255|ref|YP_430264.1| cobyrinic acid a,c-diamide synthase [Moorella thermoacetica ATCC
           39073]
 gi|83573169|gb|ABC19721.1| Cobyrinic acid a,c-diamide synthase [Moorella thermoacetica ATCC
           39073]
          Length = 287

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 15/65 (23%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C  C  C  +C  +AI                   ++ + C  CG C+ ACP  AI
Sbjct: 64  DAGICTGCGRCLEVCRYEAI---------------KELRVNPVFCEGCGACKLACPSGAI 108

Query: 119 VEGPN 123
              PN
Sbjct: 109 TMEPN 113


>gi|54302329|ref|YP_132322.1| ferredoxin-type protein napG [Photobacterium profundum SS9]
 gi|46915751|emb|CAG22522.1| hypothetical ferredoxin-type protein napG [Photobacterium profundum
           SS9]
          Length = 201

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 30/93 (32%), Gaps = 2/93 (2%)

Query: 27  FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC 86
           FFK          K  T    R   AL+   +   RCI C  C  ICP   I        
Sbjct: 19  FFKTSLVKAAFKAKQFTQRYLRPPGALKE-EDFINRCIRCNQCAEICPNNCIKFFDSENG 77

Query: 87  HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            +    T         CI C  C + CP  AI 
Sbjct: 78  LESHG-TPYITPREKACILCMKCGDVCPTGAIQ 109


>gi|45358809|ref|NP_988366.1| tungsten containing formylmethanofuran dehydrogenase subunit G
           [Methanococcus maripaludis S2]
 gi|45047675|emb|CAF30802.1| tungsten containing formylmethanofuran dehydrogenase, subunit G
           [Methanococcus maripaludis S2]
          Length = 80

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 8/69 (11%)

Query: 60  EERCIACKLCEAICPAQAITIE--------SGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            E+C  C  C   CP  A   +        S  +        V   ++   C  CG C E
Sbjct: 8   PEKCHGCGNCVVACPVNAQDPDVYGGKGPSSDEKLIMRVENGVVSIVNGDLCGGCGACIE 67

Query: 112 ACPVDAIVE 120
           ACPVDAI  
Sbjct: 68  ACPVDAIKL 76


>gi|22299343|ref|NP_682590.1| iron-sulfur cluster binding protein [Thermosynechococcus elongatus
           BP-1]
 gi|22295526|dbj|BAC09352.1| tll1800 [Thermosynechococcus elongatus BP-1]
          Length = 134

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/103 (19%), Positives = 32/103 (31%), Gaps = 8/103 (7%)

Query: 29  KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88
           K + T+ +P         +R         N     +A      +    A  I+      +
Sbjct: 2   KKRVTLTFPRRTIQMPVTYRLAKDFNIAANIIRAQVAPNQVGKLVLELAGDIDQMEAALE 61

Query: 89  GTRRT--------VRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
             R+             ID   C++CGLC   CP  A+   P 
Sbjct: 62  WLRQQNIEVSLASREIVIDEQACVHCGLCTGVCPTQALTLHPE 104



 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 9/66 (13%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           R     E+ C+ C LC  +CP QA+T+            T +      +CI C  C  AC
Sbjct: 75  REIVIDEQACVHCGLCTGVCPTQALTLHPE---------TFQLQFTRSRCIVCEQCVAAC 125

Query: 114 PVDAIV 119
           P++AI 
Sbjct: 126 PMEAIH 131


>gi|326437811|gb|EGD83381.1| Ferredoxin:4Fe-4S ferredoxin [Salpingoeca sp. ATCC 50818]
          Length = 483

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 22/67 (32%), Gaps = 3/67 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY---DIDMIKCIYCGLCQEACPV 115
             ++C+ C  C   C         G                +I    CI CG C   CPV
Sbjct: 227 DLDKCVLCTRCVRACQEIQGMSILGIASRGPYESVSPIMGKEIADTPCISCGACTAVCPV 286

Query: 116 DAIVEGP 122
            AI E P
Sbjct: 287 GAITEVP 293


>gi|320354226|ref|YP_004195565.1| dihydroorotate dehydrogenase electron transfer subunit
           [Desulfobulbus propionicus DSM 2032]
 gi|320122728|gb|ADW18274.1| Dihydroorotate dehydrogenase, electron transfer subunit,
           iron-sulfur cluster binding domain protein
           [Desulfobulbus propionicus DSM 2032]
          Length = 834

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 18/64 (28%), Gaps = 3/64 (4%)

Query: 55  RYPNGEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQE 111
                   C+ C  C  IC         S        R    +D       C +CG C +
Sbjct: 165 FMDRDYNLCVLCGRCWRICEKIHGQPAISIINRGKWARIGTAFDTSHVHSGCTFCGACID 224

Query: 112 ACPV 115
            CP 
Sbjct: 225 ICPT 228


>gi|317401939|gb|EFV82543.1| electron transport complex protein [Achromobacter xylosoxidans C54]
          Length = 148

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 24/70 (34%), Gaps = 10/70 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L      E  CI C LC   CP  AI   +             + +    C  C LC   
Sbjct: 76  LLVARIDEAHCIGCTLCIQACPVDAIVGANK----------HMHTVLPDWCTGCDLCVAP 125

Query: 113 CPVDAIVEGP 122
           CPVD I   P
Sbjct: 126 CPVDCIEMVP 135


>gi|315187124|gb|EFU20881.1| Fe-S cluster domain protein [Spirochaeta thermophila DSM 6578]
          Length = 574

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 11/64 (17%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           R        C  C  C   CP +AI I SG           R ++    C+YCG C E C
Sbjct: 5   RLIYTVTSDCFDCYKCIRECPVKAIRISSG-----------RAEVVEELCLYCGHCVEVC 53

Query: 114 PVDA 117
           P  A
Sbjct: 54  PSGA 57


>gi|304310134|ref|YP_003809732.1| predicted 4Fe-4S ferredoxin, iron-sulfur binding protein [gamma
           proteobacterium HdN1]
 gi|301795867|emb|CBL44066.1| predicted 4Fe-4S ferredoxin, iron-sulfur binding protein [gamma
           proteobacterium HdN1]
          Length = 86

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 2/65 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + C  C  C A CP   + + S      G +    ++     C  C  C  ACP DAI
Sbjct: 23  NADACTGCGRCVAACPPHVLWLASAHPLGWGGKTAELFN--EEGCTGCAKCYTACPFDAI 80

Query: 119 VEGPN 123
                
Sbjct: 81  RMEKQ 85


>gi|239909238|ref|YP_002955980.1| glutamate synthase large subunit [Desulfovibrio magneticus RS-1]
 gi|239799105|dbj|BAH78094.1| glutamate synthase large subunit [Desulfovibrio magneticus RS-1]
          Length = 544

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 25/80 (31%), Gaps = 15/80 (18%)

Query: 54  RRYPNGEERCIACKLCEAICPAQA------ITIESGPRCHDGTRRTVRYDIDMI------ 101
            +    +  C  C  C ++CP  A                   + T  Y I         
Sbjct: 19  WQIEWDKNTCTLCGRCTSVCPVNAIELGVHRKRTVEALPGLLKKPTNSYSIYHGIRQRTD 78

Query: 102 ---KCIYCGLCQEACPVDAI 118
              +CI C +C   CP +AI
Sbjct: 79  PAYRCIGCAMCNMVCPNNAI 98



 Score = 38.2 bits (87), Expect = 0.44,   Method: Composition-based stats.
 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%)

Query: 96  YDIDMIK--CIYCGLCQEACPVDAIVEG 121
           + I+  K  C  CG C   CPV+AI  G
Sbjct: 19  WQIEWDKNTCTLCGRCTSVCPVNAIELG 46


>gi|269119184|ref|YP_003307361.1| sulfite reductase, subunit C [Sebaldella termitidis ATCC 33386]
 gi|268613062|gb|ACZ07430.1| sulfite reductase, subunit C [Sebaldella termitidis ATCC 33386]
          Length = 322

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 30/98 (30%), Gaps = 10/98 (10%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +         G   + +    + +C++C +C   C   +                 R
Sbjct: 145 CPNDCQKVRMHDFGIIGMTKPVLDDTKCVSCGMCVRKCQKLSTGAIKAENY--------R 196

Query: 96  YDIDMIKCIYCGLCQEACPVDAI--VEGPNFEFATETR 131
              D  +CI CG C   CP  A    E   F  A   R
Sbjct: 197 PVRDHDRCIGCGECVLNCPTGAWTRDEKKYFRLAVMGR 234


>gi|257065425|ref|YP_003145097.1| indolepyruvate ferredoxin oxidreductase, alpha/beta subunit
           [Slackia heliotrinireducens DSM 20476]
 gi|256793078|gb|ACV23748.1| indolepyruvate ferredoxin oxidreductase, alpha/beta subunit
           [Slackia heliotrinireducens DSM 20476]
          Length = 637

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 21/56 (37%), Gaps = 11/56 (19%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           CI CK C       AI  +                +D   C  CGLC + CP DAI
Sbjct: 589 CIGCKRCITQIGCPAIGFDGEKAV-----------VDRSLCNGCGLCMQVCPFDAI 633


>gi|298530075|ref|ZP_07017477.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509449|gb|EFI33353.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 94

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 10/63 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +E+CI C +C+  CP   I  +S             Y  D+  C  CG+C   CP  AI
Sbjct: 40  DQEKCIKCGMCQVFCPEFCIHEDSEG----------FYPADLYYCKGCGICANECPKKAI 89

Query: 119 VEG 121
              
Sbjct: 90  TMT 92



 Score = 33.5 bits (75), Expect = 9.5,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 21/58 (36%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           C   +           +  +   G  +T+    D  KCI CG+CQ  CP   I E   
Sbjct: 7   CAWEKLELGTAITEPGNAAQLKTGDWKTLHPVTDQEKCIKCGMCQVFCPEFCIHEDSE 64


>gi|225023236|ref|ZP_03712428.1| hypothetical protein EIKCOROL_00088 [Eikenella corrodens ATCC
           23834]
 gi|224944060|gb|EEG25269.1| hypothetical protein EIKCOROL_00088 [Eikenella corrodens ATCC
           23834]
          Length = 484

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 26/82 (31%), Gaps = 14/82 (17%)

Query: 62  RCIACKLCEAICPA-----QAITIESGPRCHDGTRRTVRYDIDMIK-----CIYCGLCQE 111
           +CI C  C   CP       A    + P             ++  +     C  CG C E
Sbjct: 318 QCIRCGACMNHCPVYTRIGGAAYGTTYPGPIGEILSPHLLGLEPTRDLPTACTMCGACVE 377

Query: 112 ACPVDAIVEGPNFEFATETRQE 133
            CPV      P  E     R+E
Sbjct: 378 VCPVKI----PITEQMQRLREE 395


>gi|223041743|ref|ZP_03611936.1| electron transport complex protein RnfC [Actinobacillus minor 202]
 gi|223017427|gb|EEF15845.1| electron transport complex protein RnfC [Actinobacillus minor 202]
          Length = 571

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 34/105 (32%), Gaps = 3/105 (2%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E  CI C  C   CP   +  +               +  +  CI CG+C   CP  
Sbjct: 385 PEDERACIRCSSCSDACPVG-LLPQQLYWFARSEDHEKSKEYHLDACIECGVCAYVCP-S 442

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVR-NIVTDS 160
            I     F        E+    ++      R+E+   R N   ++
Sbjct: 443 YIPLIQYFRQEKAKIAEIDEKAKKAEEAKQRFEAREARLNKEKEA 487


>gi|254468707|ref|ZP_05082113.1| formate dehydrogenase, alpha subunit [beta proteobacterium KB13]
 gi|207087517|gb|EDZ64800.1| formate dehydrogenase, alpha subunit [beta proteobacterium KB13]
          Length = 946

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 2/73 (2%)

Query: 55  RYPNGEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
            +     +CI C  C   C        +    R  +        +    +C+ CG C +A
Sbjct: 157 YFTFDPSKCIVCSRCVRACEETQGTFALTIDSRGFESKVSAGNKNFFDSECVSCGACVQA 216

Query: 113 CPVDAIVEGPNFE 125
           CP   ++E    E
Sbjct: 217 CPTATLMENSVIE 229


>gi|158634518|gb|ABW76111.1| pyruvate:ferredoxin oxidoreductase [Retortamonas sp. Vale]
          Length = 1194

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 23/89 (25%), Gaps = 22/89 (24%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAI-------------------TIESGPRCHD 88
           RG        +    CI C  C + CP   I                    +        
Sbjct: 691 RGIAVKVPLWDE-STCIQCNQCVSACPHAVIRPYLVNAEEEEKLPGNVRSHLVPSKNMTA 749

Query: 89  GTRRTVRYDIDMI--KCIYCGLCQEACPV 115
             +   ++ I      C  CG+C   CP 
Sbjct: 750 KEKGEFKFIIQPSPYDCTGCGVCVAVCPT 778


>gi|153806624|ref|ZP_01959292.1| hypothetical protein BACCAC_00894 [Bacteroides caccae ATCC 43185]
 gi|149131301|gb|EDM22507.1| hypothetical protein BACCAC_00894 [Bacteroides caccae ATCC 43185]
          Length = 300

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 9/65 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C+ C  C A C   AI +                ++D  KC  CG C +ACP   I
Sbjct: 138 CSYGCLGCGDCVAACQFDAIHMNPETGLP---------EVDEAKCTACGACVKACPKAII 188

Query: 119 VEGPN 123
              P 
Sbjct: 189 EIRPQ 193



 Score = 40.9 bits (94), Expect = 0.055,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 27/81 (33%), Gaps = 8/81 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------DMIKCIYCGLCQ 110
            E +C AC  C   CP   I I    +       +               + CI CG C 
Sbjct: 169 DEAKCTACGACVKACPKAIIEIRPQGKKSRRVYVSCVNKDKGAVARKACTVSCIGCGKCV 228

Query: 111 EACPVDAIVEGPNFEFATETR 131
           + CP +AI    N  +    +
Sbjct: 229 KTCPFEAITLENNLAYIDPDK 249



 Score = 40.9 bits (94), Expect = 0.068,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 11/62 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI C  C   CP +AIT+E+               ID  KC  C  C E CP + I
Sbjct: 217 CTVSCIGCGKCVKTCPFEAITLENNLAY-----------IDPDKCKSCRKCVEVCPQNTI 265

Query: 119 VE 120
           +E
Sbjct: 266 IE 267


>gi|146329455|ref|YP_001209464.1| electron transport complex protein, B subunit [Dichelobacter
           nodosus VCS1703A]
 gi|146232925|gb|ABQ13903.1| electron transport complex protein, B subunit [Dichelobacter
           nodosus VCS1703A]
          Length = 189

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 25/66 (37%), Gaps = 10/66 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E+ CI C  C   CP  AI   +             + +   +C  C LC   CPVD
Sbjct: 109 WIVEDWCIGCTRCIQACPVDAIVGST----------QRMHTVLSAECTGCELCIAPCPVD 158

Query: 117 AIVEGP 122
            IV  P
Sbjct: 159 CIVMKP 164


>gi|189424746|ref|YP_001951923.1| cobyrinic acid ac-diamide synthase [Geobacter lovleyi SZ]
 gi|189421005|gb|ACD95403.1| Cobyrinic acid ac-diamide synthase [Geobacter lovleyi SZ]
          Length = 293

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 22/64 (34%), Gaps = 11/64 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++RC  C  C  +C  + I                R  +    C  CG C   CP  AI
Sbjct: 72  DQQRCNGCGACGELCQFRGIVAIG-----------TRALVFPELCHGCGGCALVCPTGAI 120

Query: 119 VEGP 122
            E P
Sbjct: 121 TERP 124


>gi|29346027|ref|NP_809530.1| ferredoxin [Bacteroides thetaiotaomicron VPI-5482]
 gi|253568565|ref|ZP_04845976.1| ferredoxin [Bacteroides sp. 1_1_6]
 gi|298385330|ref|ZP_06994888.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           sp. 1_1_14]
 gi|29337921|gb|AAO75724.1| Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport
           complex protein rnfB [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251842638|gb|EES70718.1| ferredoxin [Bacteroides sp. 1_1_6]
 gi|298261471|gb|EFI04337.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           sp. 1_1_14]
          Length = 293

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 9/65 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C+ C  C A C   AI +                ++D  KC  CG C +ACP   I
Sbjct: 138 CSYGCLGCGDCVAACQFDAIHMNPETGLP---------EVDEAKCTACGACVKACPKAII 188

Query: 119 VEGPN 123
              P 
Sbjct: 189 EIRPQ 193



 Score = 40.9 bits (94), Expect = 0.059,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 29/81 (35%), Gaps = 8/81 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCH--------DGTRRTVRYDIDMIKCIYCGLCQ 110
            E +C AC  C   CP   I I    +          +  +  V      + CI CG C 
Sbjct: 169 DEAKCTACGACVKACPKAIIEIRPQGKKSRRVYISCVNKDKGAVARKACTVSCIGCGKCV 228

Query: 111 EACPVDAIVEGPNFEFATETR 131
           + CP +AI    N  +    +
Sbjct: 229 KTCPFEAITLENNLAYIDPNK 249



 Score = 40.5 bits (93), Expect = 0.086,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 11/62 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI C  C   CP +AIT+E+               ID  KC  C  C E CP + I
Sbjct: 217 CTVSCIGCGKCVKTCPFEAITLENNLAY-----------IDPNKCKSCRKCVEVCPQNTI 265

Query: 119 VE 120
           +E
Sbjct: 266 IE 267


>gi|323703148|ref|ZP_08114802.1| putative PAS/PAC sensor protein [Desulfotomaculum nigrificans DSM
           574]
 gi|323531925|gb|EGB21810.1| putative PAS/PAC sensor protein [Desulfotomaculum nigrificans DSM
           574]
          Length = 573

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 6/56 (10%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           +C  C  C  IC  +AI      R + G +      +    C++CG C  ACP  A
Sbjct: 9   KCRDCYRCVRICKLKAI------RINSGDKGKFHAQVMDELCVHCGQCILACPQKA 58


>gi|302338428|ref|YP_003803634.1| electron transport complex, RnfABCDGE type subunit beta
           [Spirochaeta smaragdinae DSM 11293]
 gi|301635613|gb|ADK81040.1| electron transport complex, RnfABCDGE type, B subunit [Spirochaeta
           smaragdinae DSM 11293]
          Length = 277

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 10/97 (10%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
           +    K T +Y +               +     +  C+    C  +CP  AI+ +SG R
Sbjct: 107 HCRGTKETTSYLYAYRGLKDCNAVHALFQGDKECKYGCLGLGSCMKVCPVDAISYDSGGR 166

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                       +D   CI CG C EACP   +   P
Sbjct: 167 VV----------VDKDACISCGNCIEACPTGVMQFVP 193


>gi|291228641|ref|XP_002734288.1| PREDICTED: ATP-binding cassette, sub-family E, member 1-like
           [Saccoglossus kowalevskii]
          Length = 488

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 21/56 (37%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           K C   C      +  G  C + T       I    CI CG+C + CP +AI    
Sbjct: 20  KRCRQECKKSCPVVRMGKLCIEVTSNDKIAYISEELCIGCGICAKKCPFEAISIIN 75


>gi|256828845|ref|YP_003157573.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfomicrobium
           baculatum DSM 4028]
 gi|256578021|gb|ACU89157.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfomicrobium
           baculatum DSM 4028]
          Length = 1215

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/90 (20%), Positives = 28/90 (31%), Gaps = 18/90 (20%)

Query: 51  HALRRYPNGEERCIACKLCEAIC--------------PAQAITIESGPRCHDGTRRTVRY 96
            A+         CI C  C  +C               A A              + +++
Sbjct: 675 VAINVPEWIAANCIQCNQCSFVCPHAAIIPVLLTEEEMADAPETFETLDAIGKEFKGMKF 734

Query: 97  DIDMI--KCIYCGLCQEACPVD--AIVEGP 122
            I +    C+ CG C + CP    A+V  P
Sbjct: 735 RIQVNALDCMGCGNCADICPAKNTALVMKP 764


>gi|237736266|ref|ZP_04566747.1| electron transport complex protein [Fusobacterium mortiferum ATCC
           9817]
 gi|229421614|gb|EEO36661.1| electron transport complex protein [Fusobacterium mortiferum ATCC
           9817]
          Length = 329

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 31/89 (34%), Gaps = 11/89 (12%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
            K     P  K  T      E            CI C +C   CP  AIT+E+       
Sbjct: 185 KKVIAMLPQSKKVTVTCSSKEKGAAAKKACTTACIGCGICAKNCPVGAITVENNLA---- 240

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                   ID  KCI CG+C   CP  AI
Sbjct: 241 -------KIDPAKCISCGICATKCPTKAI 262



 Score = 40.5 bits (93), Expect = 0.079,   Method: Composition-based stats.
 Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 14/76 (18%)

Query: 52  ALRRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           A+  Y  G++ C+        CE +CP  AI +                 +D  KCI CG
Sbjct: 128 AMMLYAGGDKSCVYSCLGHGDCEKVCPVGAIKVNEKGIAE----------VDEDKCISCG 177

Query: 108 LCQEACPVDAIVEGPN 123
           LCQ+ACP   I   P 
Sbjct: 178 LCQKACPKKVIAMLPQ 193



 Score = 39.3 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 10/60 (16%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E C  C  C   CP  AI      + H          +   KC+ CG+C + C   AI  
Sbjct: 276 ENCKGCTACARKCPVGAIEGAVKEKHH----------VITEKCVGCGICFDTCKFKAIKM 325



 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 5/70 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQEAC 113
            E++CI+C LC+  CP + I +    +          +           CI CG+C + C
Sbjct: 169 DEDKCISCGLCQKACPKKVIAMLPQSKKVTVTCSSKEKGAAAKKACTTACIGCGICAKNC 228

Query: 114 PVDAIVEGPN 123
           PV AI    N
Sbjct: 229 PVGAITVENN 238


>gi|186470171|gb|AAY57574.2| HoxU [Lyngbya majuscula CCAP 1446/4]
          Length = 238

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/105 (21%), Positives = 36/105 (34%), Gaps = 10/105 (9%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDI 98
               P+   + +  ++     RCI C  C  +C     A   +   R  D    T     
Sbjct: 126 PYIFPKREVDISHTQFGIDHNRCILCTRCVRVCDEIEGAHVWDVAGRGADAKVITGLNQP 185

Query: 99  D--MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERL 141
              +  C  CG C +ACP  +I           T  E+ +D  +L
Sbjct: 186 WGQVSACTSCGKCVDACPTGSIFRK------GSTAAEMIHDHSKL 224



 Score = 34.3 bits (77), Expect = 5.4,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 25/81 (30%), Gaps = 8/81 (9%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIAC---KLCEAICPAQAITIESGPRCHDGTRR----- 92
                 +R       +  G   C  C     CE    A  + ++     +   +R     
Sbjct: 78  TPQLQDYRKMVVELLFSEGNHFCAVCVSNGNCELQDVAIEVGMDHTRFPYIFPKREVDIS 137

Query: 93  TVRYDIDMIKCIYCGLCQEAC 113
             ++ ID  +CI C  C   C
Sbjct: 138 HTQFGIDHNRCILCTRCVRVC 158


>gi|125577451|gb|EAZ18673.1| hypothetical protein OsJ_34194 [Oryza sativa Japonica Group]
          Length = 628

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           K C   C      +++G  C + T  +    I    CI CG+C + CP DAI    
Sbjct: 19  KKCRQECKKSCPVVKTGKLCIEVTPASKLAFISEELCIGCGICVKKCPFDAIEIIN 74


>gi|150398827|ref|YP_001322594.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus vannielii SB]
 gi|150011530|gb|ABR53982.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           vannielii SB]
          Length = 654

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 29/81 (35%), Gaps = 7/81 (8%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAIT-------IESGPRCHDGTRRTVRYDI 98
            F+ +   +     EE+C  C  CE +CP            +              +Y I
Sbjct: 229 NFKVKIEKKPRYLSEEKCTGCGSCEEVCPITVPNEFDMGIGMRKAIYKPFPQAVPAKYTI 288

Query: 99  DMIKCIYCGLCQEACPVDAIV 119
           D   CI CGLC + C   AI 
Sbjct: 289 DKESCIDCGLCAKVCGPQAIN 309



 Score = 39.3 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 21/64 (32%), Gaps = 7/64 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ C AC +C   CP  A                   ++    C  CG C   CP  A+
Sbjct: 580 DEDVCGACGICVQQCPYGAPRFVEKD-------GKQALEVLSALCKGCGTCAGGCPSGAL 632

Query: 119 VEGP 122
            +  
Sbjct: 633 EQSH 636



 Score = 35.1 bits (79), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 3/27 (11%)

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEF 126
             KC  CG C+E CP   I     F+ 
Sbjct: 243 EEKCTGCGSCEEVCP---ITVPNEFDM 266


>gi|56412594|ref|YP_149669.1| polyferredoxin [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|197361529|ref|YP_002141165.1| polyferredoxin [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|56126851|gb|AAV76357.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|197093005|emb|CAR58438.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
          Length = 287

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 20/73 (27%), Gaps = 11/73 (15%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            + C  C  C   CP   I  +                I    C  CG C   CP  A+ 
Sbjct: 190 PQECRMCGACWRSCPENVIQFDDD-----------TLTIAAAHCTGCGGCAAVCPHQALR 238

Query: 120 EGPNFEFATETRQ 132
              + E A     
Sbjct: 239 LRFDVEPAPTRHS 251



 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 11/50 (22%)

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  +CPAQA ++  G              ID  +CI CG C   CPVDAI
Sbjct: 29  CADVCPAQAFSLAQGQVS-----------IDTTRCIACGDCLFVCPVDAI 67


>gi|6685747|sp|P56815|PORD_METTH RecName: Full=Pyruvate synthase subunit porD; AltName:
           Full=Pyruvate oxidoreductase delta chain; Short=POR;
           AltName: Full=Pyruvic-ferredoxin oxidoreductase subunit
           delta
          Length = 81

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 14/65 (21%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +++CI C  C   CP   I  E              ++ID   C  CG+C E CPV AI
Sbjct: 30  DKDKCIDCDNCILFCPEGCINRE--------------HEIDYDYCKGCGICAEKCPVKAI 75

Query: 119 VEGPN 123
                
Sbjct: 76  KMERE 80


>gi|46580181|ref|YP_010989.1| [Fe] hydrogenase gamma [Desulfovibrio vulgaris str. Hildenborough]
 gi|40828|emb|CAA40970.1| Hyd gamma [Desulfovibrio vulgaris str. Hildenborough]
 gi|46449598|gb|AAS96248.1| [Fe] hydrogenase gamma [Desulfovibrio vulgaris str. Hildenborough]
 gi|311233828|gb|ADP86682.1| hydrogenase, Fe-only [Desulfovibrio vulgaris RCH1]
 gi|226889|prf||1610171A hydrogenase gamma
          Length = 606

 Score = 43.9 bits (102), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 9/85 (10%)

Query: 59  GEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
              +CI C  C A+C       A+ +       +   R  R       C+ CG C   CP
Sbjct: 148 DMGKCIRCLRCVAVCRNVQGVDALVVTGNGIGTEIGLRHNRSQ-SASDCVGCGQCTLVCP 206

Query: 115 VDAIVEGPNFEFATETRQELYYDKE 139
           V A+    + E       +  YD E
Sbjct: 207 VGALAGRDDVERVI----DYLYDPE 227


>gi|332560814|ref|ZP_08415132.1| 4Fe-4S ferredoxin, RnfC [Rhodobacter sphaeroides WS8N]
 gi|332274612|gb|EGJ19928.1| 4Fe-4S ferredoxin, RnfC [Rhodobacter sphaeroides WS8N]
          Length = 517

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 30/99 (30%), Gaps = 13/99 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI C  C   CP      E   R            I ++ CI CG C   CP +  
Sbjct: 377 DTMPCIRCGRCAQACPVGLTPFELNARIQSEDLEGAG-RIGLLDCITCGCCSFTCPSNLP 435

Query: 119 VEGPNFEFATETRQELYYDKERL-LNNGDRWESEIVRNI 156
           +                Y K +L    G R + E  + +
Sbjct: 436 LVQTIH-----------YAKGKLAEAEGRRHQQEETKRL 463


>gi|329962551|ref|ZP_08300532.1| 4Fe-4S binding domain protein [Bacteroides fluxus YIT 12057]
 gi|328529807|gb|EGF56699.1| 4Fe-4S binding domain protein [Bacteroides fluxus YIT 12057]
          Length = 373

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 10/55 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
               CI C +C   C   A+ + +  +            ID +KC+ CG C   C
Sbjct: 192 DTGHCIGCNICVKHCAHDAVHLNAQRKAE----------IDYVKCVGCGQCVALC 236


>gi|322515041|ref|ZP_08068049.1| electron transport complex protein RnfC [Actinobacillus ureae ATCC
           25976]
 gi|322118921|gb|EFX91098.1| electron transport complex protein RnfC [Actinobacillus ureae ATCC
           25976]
          Length = 604

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 20/58 (34%), Gaps = 1/58 (1%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           P  E  CI C  C   CP   +  +               +  +  CI CG+C   CP
Sbjct: 379 PEPERSCIRCSSCSDACPVGLLPQQLY-WFSRSDDHDKSKEYHLDACIECGVCAYVCP 435


>gi|296387990|ref|ZP_06877465.1| electron transport complex protein RnfB [Pseudomonas aeruginosa
           PAb1]
          Length = 188

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 10/67 (14%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           R     E  CI C  C   CP  AI   +           + + +   +C  C LC E C
Sbjct: 104 RVAYIREAECIGCTKCIQACPVDAIVGAA----------RLMHTVIADECTGCDLCLEPC 153

Query: 114 PVDAIVE 120
           PVD I  
Sbjct: 154 PVDCIEM 160



 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 16/38 (42%)

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           E  P             I   +CI C  C +ACPVDAI
Sbjct: 91  EPEPLDAAEETPPRVAYIREAECIGCTKCIQACPVDAI 128


>gi|288931410|ref|YP_003435470.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Ferroglobus placidus DSM 10642]
 gi|288893658|gb|ADC65195.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Ferroglobus placidus DSM 10642]
          Length = 623

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 20/67 (29%), Gaps = 11/67 (16%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
              R     E C  C  C +     AI  +                ID   C  CG C +
Sbjct: 563 VKIRPFEVTEACTLCLRCVSDFTCPAIIYDGEKV-----------WIDEALCAGCGFCVQ 611

Query: 112 ACPVDAI 118
            CP  AI
Sbjct: 612 VCPEKAI 618


>gi|322417714|ref|YP_004196937.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Geobacter sp. M18]
 gi|320124101|gb|ADW11661.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Geobacter sp. M18]
          Length = 1182

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/106 (19%), Positives = 31/106 (29%), Gaps = 24/106 (22%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------QAITIESGP------- 84
              TS   +   A+      E+ CI C +C  +CP          A  + + P       
Sbjct: 673 PTGTSQYEKRNIAVDIPVWDEKICIQCGICSFVCPHATIRMKIYDADKLSAAPETFKSVD 732

Query: 85  -RCHDGTRRTVRYDIDMIKCIYCGLCQEACPV--------DAIVEG 121
            R ++         +    C  CG C   CP          AI   
Sbjct: 733 ARGNEYKGMKCTVQVAPEDCTGCGACVANCPAKSKEDPKHKAINMT 778



 Score = 39.3 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 13/52 (25%)

Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVR 154
           CI CG+C   CP   I                 YD ++L    + ++S   R
Sbjct: 696 CIQCGICSFVCPHATIRMK-------------IYDADKLSAAPETFKSVDAR 734


>gi|251771840|gb|EES52414.1| Pyridine nucleotide-disulphide oxidoreductase [Leptospirillum
           ferrodiazotrophum]
          Length = 615

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/112 (16%), Positives = 32/112 (28%), Gaps = 28/112 (25%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE-------SGPRCHDGTR 91
           E+ + +   R             +C+ C  C  +CP  A+ +           +      
Sbjct: 494 EEQARTQASRCLTCHVNPIFEGHKCVLCGGCVDVCPEYALKMVPLTDVDLEHGKVEPLVE 553

Query: 92  RTVRYDIDMI---------------------KCIYCGLCQEACPVDAIVEGP 122
                +I +                      +CI CGLC + CP  AI    
Sbjct: 554 AFTETEITLDHIEEPVVQTLSQSTAMIWDGMRCIRCGLCAKRCPTGAIAMEH 605


>gi|237654368|ref|YP_002890682.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thauera sp.
           MZ1T]
 gi|237625615|gb|ACR02305.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thauera sp.
           MZ1T]
          Length = 710

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 9/60 (15%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C  C  C   CPA A+   S            R +     C+ CGLC+ +CP  AI   P
Sbjct: 574 CTLCMSCTGACPAGALRAASDAY---------RLEFVEKNCLQCGLCEASCPESAITLEP 624



 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 11/29 (37%), Positives = 14/29 (48%)

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            T    ID+  C+ C  C +ACP  AI  
Sbjct: 198 WTQHNPIDLELCVRCNACVKACPEGAIGW 226


>gi|242280554|ref|YP_002992683.1| nitroreductase [Desulfovibrio salexigens DSM 2638]
 gi|242123448|gb|ACS81144.1| nitroreductase [Desulfovibrio salexigens DSM 2638]
          Length = 287

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 30/83 (36%), Gaps = 11/83 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E C   +LC   CP   +T+E   +      +   Y      CI CG C   CP  AI
Sbjct: 7   DTELCKRDELCVHECPLMVLTVEKKGQVPVVHPKKTNY------CINCGHCMAICPTGAI 60

Query: 119 VEGPNFEFATETRQELYYDKERL 141
                   A E +    + KE L
Sbjct: 61  TLS-----AFEGQAAEPFSKEDL 78


>gi|212550805|ref|YP_002309122.1| pyruvate-flavodoxin oxidoreductase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212549043|dbj|BAG83711.1| putative pyruvate-flavodoxin oxidoreductase [Candidatus
           Azobacteroides pseudotrichonymphae genomovar. CFP2]
          Length = 1181

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 45/135 (33%), Gaps = 34/135 (25%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR------- 91
           E+G+ +   RG           + CI C  C  +CP  +I                    
Sbjct: 670 EQGTAAYEKRGVGTHVPTWI-LDNCIQCNQCSYVCPHASIRPFILDESEQSEAPVDLDTL 728

Query: 92  ---------RTVRYDIDMIKCIYCGLCQEACPVD----AIVEGP---------NFEFATE 129
                       R  ++++ C+ CG C + CP +    A+   P         N++F TE
Sbjct: 729 KAVGKKFEGMNFRMQVNVLDCLGCGNCVDVCPGNKNGKALQMSPIENEWNNQSNWDFCTE 788

Query: 130 TRQELYYDKERLLNN 144
                   K+ L++ 
Sbjct: 789 K----VKTKQHLVDV 799


>gi|195393212|ref|XP_002055248.1| GJ18897 [Drosophila virilis]
 gi|194149758|gb|EDW65449.1| GJ18897 [Drosophila virilis]
          Length = 1031

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 18/65 (27%), Gaps = 8/65 (12%)

Query: 59   GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP-VDA 117
             ++ CI C  C   C                  +          C  C LC   CP +D 
Sbjct: 949  NDDMCINCGKCYMTCA-------DSGYQAIEFDKDTHLPHVNDDCTGCTLCVSVCPIIDC 1001

Query: 118  IVEGP 122
            I   P
Sbjct: 1002 IRMEP 1006


>gi|154248935|ref|YP_001409760.1| hydrogenase, Fe-only [Fervidobacterium nodosum Rt17-B1]
 gi|154152871|gb|ABS60103.1| hydrogenase, Fe-only [Fervidobacterium nodosum Rt17-B1]
          Length = 586

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 61  ERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDI--DMIKCIYCGLCQEACPVDA 117
            +CI C+ C  +C   Q + I S       +     + I      CI CG C   CPV A
Sbjct: 144 SKCIKCQRCVRVCSEIQGMNIYSMVDRGYESLPETEFGIPVYETNCISCGQCAYLCPVGA 203

Query: 118 IVEGPNF 124
           I E P++
Sbjct: 204 IYEAPDW 210



 Score = 33.5 bits (75), Expect = 9.3,   Method: Composition-based stats.
 Identities = 18/103 (17%), Positives = 30/103 (29%), Gaps = 11/103 (10%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E+  ++ +F     +  +P+    C A   CE          +  P            DI
Sbjct: 77  ERVESAVKFNLSLIMANHPHECMYCEADGRCELQKLV--HMYDIKPIFGVNVDMDKEIDI 134

Query: 99  -------DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134
                  ++ KCI C  C   C    I     +       + L
Sbjct: 135 SSPSINRELSKCIKCQRCVRVC--SEIQGMNIYSMVDRGYESL 175


>gi|95928306|ref|ZP_01311054.1| Pyruvate:ferredoxin (flavodoxin) oxidoreductase [Desulfuromonas
           acetoxidans DSM 684]
 gi|95135577|gb|EAT17228.1| Pyruvate:ferredoxin (flavodoxin) oxidoreductase [Desulfuromonas
           acetoxidans DSM 684]
          Length = 1190

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/96 (16%), Positives = 25/96 (26%), Gaps = 24/96 (25%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVR 95
             A+      ++ CI C +C  +CP                A                ++
Sbjct: 681 NIAVNIPVWEQDLCIQCGICSFVCPHASIRMKAYDPAELDGAPETFKSVDAKGKEMAGMK 740

Query: 96  Y--DIDMIKCIYCGLCQEACP--------VDAIVEG 121
           +   +    C  CG C   CP          AI   
Sbjct: 741 FTLQVAPEDCTGCGACVHNCPAKSKEEEGKKAINMT 776


>gi|327535031|gb|AEA93865.1| NAD-dependent formate dehydrogenase, alpha subunit [Enterococcus
           faecalis OG1RF]
          Length = 906

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 3/92 (3%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV 94
           F +G   P  + + +   +    E+CI C+ C  +C  +        +          + 
Sbjct: 133 FTEGKRMPCHQEDTSNPFFSYDPEKCIMCRRCARVCQLRQGRDVLSIANRGFETKMMPSY 192

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
               D   C  CG C  +CP  A+      E+
Sbjct: 193 GQAFDQSICESCGNCVSSCPTGALTAKDMKEY 224


>gi|317502269|ref|ZP_07960441.1| 4Fe-4S ferredoxin [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089012|ref|ZP_08337919.1| ferredoxin [Lachnospiraceae bacterium 3_1_46FAA]
 gi|316896330|gb|EFV18429.1| 4Fe-4S ferredoxin [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330406464|gb|EGG85977.1| ferredoxin [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 56

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 11/64 (17%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + C++C  CEA CP  AI+   G            Y+ID   C+ CG C+ ACP
Sbjct: 1   MAHVISDECVSCGSCEAECPVGAISEGDGK-----------YEIDADACVDCGACEAACP 49

Query: 115 VDAI 118
             AI
Sbjct: 50  TGAI 53


>gi|282164659|ref|YP_003357044.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit
           A/F420-non-reducing hydrogenase iron-sulfur subunit D
           [Methanocella paludicola SANAE]
 gi|282156973|dbj|BAI62061.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit
           A/F420-non-reducing hydrogenase iron-sulfur subunit D
           [Methanocella paludicola SANAE]
          Length = 786

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/99 (25%), Positives = 35/99 (35%), Gaps = 18/99 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E+C +C  C  +CP  A                 R  ID + CI  G C   CP  AI
Sbjct: 574 DHEKCTSCGACVKLCPYGAAYTNG------------RITIDPLSCIGLGGCILRCPEHAI 621

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIV 157
                 + A   R       + +L +G R  + +  NI 
Sbjct: 622 SLPSCSDEALYAR------IDGMLASGPRMIAFLDENIA 654



 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 7/72 (9%)

Query: 57  PNGEERCIACKLCEAICP------AQAI-TIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
               ++C++C  C   CP        A+ +                Y ID   C  CG C
Sbjct: 239 HIDPKKCMSCGKCAQACPVTVKDEWNAMLSKRKAAYRPFPQAVPSSYTIDDKACKKCGSC 298

Query: 110 QEACPVDAIVEG 121
            +AC   AI   
Sbjct: 299 VKACGAGAIDLS 310


>gi|282901426|ref|ZP_06309351.1| ferredoxin (flavodoxin) oxidoreductase [Cylindrospermopsis
           raciborskii CS-505]
 gi|281193705|gb|EFA68677.1| ferredoxin (flavodoxin) oxidoreductase [Cylindrospermopsis
           raciborskii CS-505]
          Length = 1185

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/123 (17%), Positives = 35/123 (28%), Gaps = 30/123 (24%)

Query: 58  NGEERCIACKLCEAICPAQ----------------AITIESGPRCHDGTRRTVRYDIDMI 101
             E  C+ C  C  +CP                  A    +  +      +     I   
Sbjct: 687 WDENVCVQCGKCVMVCPHATIRAKTYAPHQLLNAPATFKSTDAKDKSFAGQKFTIQIAPE 746

Query: 102 KCIYCGLCQEACP--------VDAIVEGPNFEFATETRQ--ELYYDKERLLNNGDRWESE 151
            C  C LC   CP          A+   P        ++  E + +    L N DR + +
Sbjct: 747 DCTGCSLCVNICPAKNKAEPTKKALNMHPQIPLRALEKENWEFFLN----LPNPDRRKLK 802

Query: 152 IVR 154
           + +
Sbjct: 803 LNQ 805


>gi|257457555|ref|ZP_05622722.1| 4Fe-4S binding domain protein [Treponema vincentii ATCC 35580]
 gi|257444941|gb|EEV20017.1| 4Fe-4S binding domain protein [Treponema vincentii ATCC 35580]
          Length = 56

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 11/58 (18%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           C+ C  CE  CP  AI+  +G R            ID   CI CG C   CP +AI E
Sbjct: 9   CVNCGACEGECPVGAISEANGARV-----------IDADACISCGACAGVCPTEAISE 55


>gi|168334990|ref|ZP_02693106.1| pyruvate-flavodoxin oxidoreductase [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 1037

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 29/105 (27%), Gaps = 23/105 (21%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITI------ESGPRCHDGTRRTV---------- 94
            A+         CI C  C  ICP   I        E          +            
Sbjct: 676 IAIDVPEWNVNNCIQCNQCAFICPHACIRPVLVNADEKAAAPETFETKKAIGKVFEGLEY 735

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139
           R  +  + C  C  C + CP        N   A +   +L  +KE
Sbjct: 736 RIQVSPLDCTGCSNCVDICP------SKNKALAMKHIGDLV-EKE 773


>gi|150399888|ref|YP_001323655.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta [Methanococcus
           vannielii SB]
 gi|150012591|gb|ABR55043.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Methanococcus vannielii SB]
          Length = 375

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 7/108 (6%)

Query: 29  KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG----- 83
           K+  T+   ++K      +        Y +   +C +CK    +C  +   +        
Sbjct: 249 KSMITLGKKYKKEQLDESYPTTDKWNEYWSRCIKCYSCKDVCPVCFCKECALTEDYLDKG 308

Query: 84  -PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
               +    + +R       CI CG C++ CPV+ I     +  A + 
Sbjct: 309 TIPPNPVMFQGIRLSHMSFSCINCGQCEDVCPVE-IPLSSIYHRAQQK 355


>gi|134045265|ref|YP_001096751.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus maripaludis C5]
 gi|132662890|gb|ABO34536.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methanococcus maripaludis C5]
          Length = 132

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 10/62 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +E+CI C  C   CP  AI+++   +            +D  +CI C  C + CPV+AI
Sbjct: 78  DDEKCIDCGACVVHCPVGAISVDDEFKIL----------LDEDECIGCKNCAKICPVNAI 127

Query: 119 VE 120
             
Sbjct: 128 KI 129



 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 12/24 (50%)

Query: 101 IKCIYCGLCQEACPVDAIVEGPNF 124
            KCI CG C   CPV AI     F
Sbjct: 80  EKCIDCGACVVHCPVGAISVDDEF 103


>gi|21227542|ref|NP_633464.1| hypothetical protein MM_1440 [Methanosarcina mazei Go1]
 gi|20905922|gb|AAM31136.1| conserved protein [Methanosarcina mazei Go1]
          Length = 540

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 5/62 (8%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E+CI C+ C   CP  A+             RT +YD        C  C   CP +AI  
Sbjct: 478 EKCIYCQKCMEECPENAL-----EITETDGIRTAKYDSQKCLGTSCRRCVSVCPENAIDI 532

Query: 121 GP 122
             
Sbjct: 533 TK 534



 Score = 37.0 bits (84), Expect = 0.81,   Method: Composition-based stats.
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 97  DIDMIKCIYCGLCQEACPVDA--IVEGPNFEFATET 130
           ++ + KCIYC  C E CP +A  I E      A   
Sbjct: 474 EVPVEKCIYCQKCMEECPENALEITETDGIRTAKYD 509


>gi|20089624|ref|NP_615699.1| hypothetical protein MA0739 [Methanosarcina acetivorans C2A]
 gi|19914545|gb|AAM04179.1| hypothetical protein (multi-domain) [Methanosarcina acetivorans
           C2A]
          Length = 219

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 12/72 (16%)

Query: 47  FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
           F G           E+C AC +C+ +CP++AI+            +   Y ID   C+ C
Sbjct: 154 FGGAKVAEPGYKITEKCTACGICKELCPSRAIS------------KGEIYKIDGSICLEC 201

Query: 107 GLCQEACPVDAI 118
           G C E CP DAI
Sbjct: 202 GRCAENCPYDAI 213



 Score = 33.9 bits (76), Expect = 7.1,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 101 IKCIYCGLCQEACPVDAIVEGPNF 124
            KC  CG+C+E CP  AI +G  +
Sbjct: 168 EKCTACGICKELCPSRAISKGEIY 191


>gi|46202219|ref|ZP_00053559.2| COG4656: Predicted NADH:ubiquinone oxidoreductase, subunit RnfC
           [Magnetospirillum magnetotacticum MS-1]
          Length = 498

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 2/68 (2%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             CI C  C   CP   +            +  +   I +  C+ CG C   CP   I  
Sbjct: 367 SPCIRCGSCVTYCPCG-LVPVEMASFIRNDKLDLAAKIGVQDCVSCGSCSYICPSH-IPL 424

Query: 121 GPNFEFAT 128
              F +A 
Sbjct: 425 VHFFNYAK 432


>gi|330835618|ref|YP_004410346.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Metallosphaera cuprina Ar-4]
 gi|329567757|gb|AEB95862.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Metallosphaera cuprina Ar-4]
          Length = 88

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 11/63 (17%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERCIAC  C   CP   I             R  R +++   C  CG+C   CPV AI  
Sbjct: 36  ERCIACNACFLWCPEGTI-----------QVRGKRAEVNYEYCKGCGVCANVCPVKAISM 84

Query: 121 GPN 123
              
Sbjct: 85  VSE 87


>gi|325262414|ref|ZP_08129151.1| sulfite reductase, subunit C [Clostridium sp. D5]
 gi|324032246|gb|EGB93524.1| sulfite reductase, subunit C [Clostridium sp. D5]
          Length = 355

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 26/87 (29%), Gaps = 6/87 (6%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +         G   + R     ERCI C  C   C  +A T         G      
Sbjct: 161 CPNDCNKAHLCDFGIIGVARMVYHPERCIGCGACARTCE-KASTRVLKLNEDTGKIEKDA 219

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGP 122
                  CI CG C  ACP  A    P
Sbjct: 220 CC-----CIGCGECVRACPTSAWTREP 241


>gi|323144838|ref|ZP_08079407.1| electron transport complex, RnfABCDGE type, B subunit
           [Succinatimonas hippei YIT 12066]
 gi|322415363|gb|EFY06128.1| electron transport complex, RnfABCDGE type, B subunit
           [Succinatimonas hippei YIT 12066]
          Length = 189

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 10/63 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E +C  C  C   CP  AI            +    + I+  +CI C  C + CP   I
Sbjct: 114 DENKCTGCSKCLKHCPVDAIEG----------KIKTVHHINSEECIGCADCSKICPEQCI 163

Query: 119 VEG 121
              
Sbjct: 164 SMQ 166


>gi|298674990|ref|YP_003726740.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Methanohalobium evestigatum Z-7303]
 gi|298287978|gb|ADI73944.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanohalobium evestigatum Z-7303]
          Length = 132

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 10/67 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++ C+ C  C +ICP     I+               +++   CI CG C + CP  A+
Sbjct: 75  DDDECVDCGACVSICPKNVFKIDENWNV----------NMEPENCIQCGTCIKTCPHGAL 124

Query: 119 VEGPNFE 125
                 E
Sbjct: 125 SIQNLME 131


>gi|295147993|dbj|BAJ06128.1| trichloroethene reductive dehalogenase [uncultured Dehalococcoides
           sp.]
          Length = 250

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 3/60 (5%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID---MIKCIYCGLCQEACPVD 116
            E C  C +C   CP QAI+ E              Y+       KCI C  C+  CP  
Sbjct: 130 REFCKTCGICAEHCPTQAISHEGPRYDSPHWDCVSGYEGWHLDHHKCINCTNCEVFCPFF 189



 Score = 34.7 bits (78), Expect = 4.1,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%)

Query: 103 CIYCGLCQEACPVDAI-VEGPNFE 125
           C  CG+C E CP  AI  EGP ++
Sbjct: 133 CKTCGICAEHCPTQAISHEGPRYD 156


>gi|256829155|ref|YP_003157883.1| ferredoxin-dependent glutamate synthase [Desulfomicrobium baculatum
           DSM 4028]
 gi|256578331|gb|ACU89467.1| ferredoxin-dependent glutamate synthase [Desulfomicrobium baculatum
           DSM 4028]
          Length = 544

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/99 (21%), Positives = 32/99 (32%), Gaps = 20/99 (20%)

Query: 54  RRYPNGEERCIACKLCEAICPAQ---------------AITIESGPRCHDGTRRTVRYDI 98
            +    ++RC  C  C A+CP Q               A         H       +   
Sbjct: 19  WQIEWNKDRCTLCGQCCAVCPMQSLELGTFRKRTIKVPAGFKNKPENEHSIYYGIRQRTA 78

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
               C+ CG C   CP DAI+        ++ + +L Y 
Sbjct: 79  PHQACVGCGTCSMVCPNDAILP-----MHSDEKDKLRYH 112


>gi|167646403|ref|YP_001684066.1| cytochrome c oxidase accessory protein CcoG [Caulobacter sp. K31]
 gi|167348833|gb|ABZ71568.1| cytochrome c oxidase accessory protein CcoG [Caulobacter sp. K31]
          Length = 501

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 16/66 (24%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           RG H   +   G   CI C  C  +CP                      D   ++CI CG
Sbjct: 269 RGAHKKGQPWEGRGDCIDCHQCVVVCPMG----------------IDIRDGSQMECINCG 312

Query: 108 LCQEAC 113
           LC +AC
Sbjct: 313 LCVDAC 318


>gi|160893574|ref|ZP_02074358.1| hypothetical protein CLOL250_01128 [Clostridium sp. L2-50]
 gi|163814830|ref|ZP_02206218.1| hypothetical protein COPEUT_00980 [Coprococcus eutactus ATCC 27759]
 gi|156864559|gb|EDO57990.1| hypothetical protein CLOL250_01128 [Clostridium sp. L2-50]
 gi|158449769|gb|EDP26764.1| hypothetical protein COPEUT_00980 [Coprococcus eutactus ATCC 27759]
          Length = 56

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 11/60 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C   CP  AI+   G            + ID  +CI CG C  +CPV  I E
Sbjct: 7   DSCIGCGSCAGSCPVGAISDNGG-----------VFVIDGSQCISCGACAGSCPVGTISE 55


>gi|150007436|ref|YP_001302179.1| pyruvate-formate lyase-activating enzyme [Parabacteroides
           distasonis ATCC 8503]
 gi|149935860|gb|ABR42557.1| pyruvate-formate lyase-activating enzyme [Parabacteroides
           distasonis ATCC 8503]
          Length = 301

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 11/62 (17%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            ++CI C  C  +CP  A+T+       D              C  CG C E CP  A+ 
Sbjct: 49  RKKCIGCGACVDVCPTGALTLTEAGIVTD-----------RSLCRTCGRCAEVCPTLAME 97

Query: 120 EG 121
             
Sbjct: 98  MS 99


>gi|23664244|gb|AAN39276.1| iron hydrogenase precursor [Neocallimastix frontalis]
          Length = 248

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 3/63 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPV 115
              +C+ C  C   C         G     G  R        ++  KC+ CG C + CPV
Sbjct: 185 DMNKCVKCGRCIRACHHFQNINILGFINRAGYERVGTPMDRPMNFTKCVECGQCSQVCPV 244

Query: 116 DAI 118
            AI
Sbjct: 245 GAI 247


>gi|88602559|ref|YP_502737.1| ferredoxin [Methanospirillum hungatei JF-1]
 gi|88188021|gb|ABD41018.1| ferredoxin [Methanospirillum hungatei JF-1]
          Length = 270

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 23/76 (30%), Gaps = 1/76 (1%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITI-ESGPRCHDGTRRTVRYDIDMIKCIYC 106
           R    +        +CI C LC  +C     T   +       T     +      C  C
Sbjct: 124 RFLKKIVHDDPLFGKCILCGLCVRVCNEIMGTSAINFINRGPYTVINTPFFEHNPDCAGC 183

Query: 107 GLCQEACPVDAIVEGP 122
             C + CP  AIV   
Sbjct: 184 AACAQVCPTKAIVFED 199


>gi|229550119|ref|ZP_04438844.1| NAD-dependent formate dehydrogenase, alpha subunit [Enterococcus
           faecalis ATCC 29200]
 gi|257422720|ref|ZP_05599710.1| NAD-dependent formate dehydrogenase alpha subunit [Enterococcus
           faecalis X98]
 gi|307277472|ref|ZP_07558564.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX2134]
 gi|312952394|ref|ZP_07771269.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX0102]
 gi|229304705|gb|EEN70701.1| NAD-dependent formate dehydrogenase, alpha subunit [Enterococcus
           faecalis ATCC 29200]
 gi|257164544|gb|EEU94504.1| NAD-dependent formate dehydrogenase alpha subunit [Enterococcus
           faecalis X98]
 gi|306505737|gb|EFM74915.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX2134]
 gi|310629778|gb|EFQ13061.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX0102]
 gi|315153357|gb|EFT97373.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX0031]
 gi|315155866|gb|EFT99882.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX0043]
 gi|315157967|gb|EFU01984.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX0312]
          Length = 906

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 3/92 (3%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV 94
           F +G   P  + + +   +    E+CI C+ C  +C  +        +          + 
Sbjct: 133 FTEGKRMPCHQEDTSNPFFSYDPEKCIMCRRCARVCQLRQGRDVLSIANRGFETKMMPSY 192

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
               D   C  CG C  +CP  A+      E+
Sbjct: 193 GQAFDQSICESCGNCVSSCPTGALTAKDMKEY 224


>gi|218887979|ref|YP_002437300.1| methyl-viologen-reducing hydrogenase subunit delta [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218758933|gb|ACL09832.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 754

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 20/62 (32%), Gaps = 10/62 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              RC  CK C   CP  A+  +                 +  +C  CG C  ACP   I
Sbjct: 543 NFVRCTQCKRCTEECPFGALDDDEKGTPKP----------NPARCRRCGTCMGACPERVI 592

Query: 119 VE 120
             
Sbjct: 593 SF 594


>gi|147678981|ref|YP_001213196.1| formate dehydrogenase [Pelotomaculum thermopropionicum SI]
 gi|146275078|dbj|BAF60827.1| hypothetical formate dehydrogenase [Pelotomaculum thermopropionicum
           SI]
          Length = 354

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 10/70 (14%)

Query: 59  GEERCIACKLCEAICP--------AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
              +CI C  C  +C           A              R    +I    C++CG C 
Sbjct: 144 DMNKCILCGKCVRVCEEIQGNNAIDFAYRGFKAKVGPAMDARLSDTEI--SNCVFCGNCV 201

Query: 111 EACPVDAIVE 120
             CPV A+ E
Sbjct: 202 AVCPVGALTE 211


>gi|57234856|ref|YP_181054.1| reductive dehalogenase, putative [Dehalococcoides ethenogenes 195]
 gi|57225304|gb|AAW40361.1| reductive dehalogenase, putative [Dehalococcoides ethenogenes 195]
          Length = 505

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 3/72 (4%)

Query: 56  YPNGEERCIACKLCEAICPAQAI---TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
                E C  CK+C   CP  AI             G    + +  +   C +C +CQ  
Sbjct: 384 DFGSREFCKTCKICAEACPFGAIKTGDPTWEDDTIYGNPGFLGWHCNYDLCPHCPVCQGT 443

Query: 113 CPVDAIVEGPNF 124
           CP + I +  +F
Sbjct: 444 CPFNTIRDDKSF 455


>gi|57168756|ref|ZP_00367887.1| iron-sulfur cluster binding protein [Campylobacter coli RM2228]
 gi|305432502|ref|ZP_07401664.1| iron-sulfur cluster-binding protein [Campylobacter coli JV20]
 gi|57019803|gb|EAL56486.1| iron-sulfur cluster binding protein [Campylobacter coli RM2228]
 gi|304444541|gb|EFM37192.1| iron-sulfur cluster-binding protein [Campylobacter coli JV20]
          Length = 479

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 23/89 (25%), Gaps = 10/89 (11%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-----QAITIESGPRCHDGTRR 92
                     R +    +      RCI C  C   CP            + P        
Sbjct: 287 EVHVILFDHNRTKMLAHKDYYEALRCIRCGACMNFCPVYDQIGGHAYQTTYPGPIGEVIS 346

Query: 93  TVRYDIDM-----IKCIYCGLCQEACPVD 116
              + ID        C  CG C E CPV 
Sbjct: 347 PNIFGIDHTGDILNFCSLCGRCSEVCPVQ 375


>gi|331268846|ref|YP_004395338.1| CobQ/CobB/MinD/ParA family protein [Clostridium botulinum
           BKT015925]
 gi|329125396|gb|AEB75341.1| CobQ/CobB/MinD/ParA family protein [Clostridium botulinum
           BKT015925]
          Length = 282

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 26/82 (31%), Gaps = 21/82 (25%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++ C  C  C+ +C   AI+                  ID   C  CG C   CP +AI
Sbjct: 63  NDKLCTNCGKCQRVCRFDAISNNK---------------IDSYSCEGCGTCIIVCPNNAI 107

Query: 119 VEGPNFEFATETRQELYYDKER 140
                     E    +Y  K  
Sbjct: 108 Q------LNEEKSANMYITKTD 123


>gi|323141693|ref|ZP_08076571.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT 12067]
 gi|322413849|gb|EFY04690.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT 12067]
          Length = 296

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 22/72 (30%), Gaps = 18/72 (25%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L        +CI C  C   C      +                      CI CG C++ 
Sbjct: 243 LFGMKVNAVKCINCDRCMEHCKMDCRHVGDSE------------------CIACGECRKV 284

Query: 113 CPVDAIVEGPNF 124
           CPV AI  G  F
Sbjct: 285 CPVKAISLGKKF 296


>gi|312383321|gb|EFR28456.1| hypothetical protein AND_03577 [Anopheles darlingi]
          Length = 1672

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/80 (25%), Positives = 26/80 (32%), Gaps = 14/80 (17%)

Query: 59   GEERCIACKLCEAICP---AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP- 114
             ++ CI C  C   C     QAI+ +S                    C  C LC   CP 
Sbjct: 1589 DDDLCINCGKCYMTCADSGYQAISFDSQTHLPH----------VTDDCTGCNLCLSVCPI 1638

Query: 115  VDAIVEGPNFEFATETRQEL 134
            +D I   P        R +L
Sbjct: 1639 IDCISMVPKKIPHVIKRGKL 1658


>gi|297617703|ref|YP_003702862.1| hydrogenase, Fe-only [Syntrophothermus lipocalidus DSM 12680]
 gi|297145540|gb|ADI02297.1| hydrogenase, Fe-only [Syntrophothermus lipocalidus DSM 12680]
          Length = 401

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 10/58 (17%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             C  C  C ++CP+ AI    G + H          ID  KC+ CG C  +CP  AI
Sbjct: 28  SDCHGCDHCTSVCPSHAIKGRIGEQHH----------IDTRKCLNCGQCLISCPFGAI 75


>gi|302875371|ref|YP_003844004.1| putative iron-sulfur protein [Clostridium cellulovorans 743B]
 gi|307688950|ref|ZP_07631396.1| putative iron-sulfur protein [Clostridium cellulovorans 743B]
 gi|302578228|gb|ADL52240.1| putative iron-sulfur protein [Clostridium cellulovorans 743B]
          Length = 417

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 11/60 (18%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+ C  C   CP  AIT++                +D   C+ CG+C   CP  +I+   
Sbjct: 292 CVGCGKCAKACPIGAITMKDKKAA-----------VDEEICLGCGVCVRNCPKKSIILKK 340


>gi|291287574|ref|YP_003504390.1| ferredoxin-dependent glutamate synthase [Denitrovibrio acetiphilus
           DSM 12809]
 gi|290884734|gb|ADD68434.1| ferredoxin-dependent glutamate synthase [Denitrovibrio acetiphilus
           DSM 12809]
          Length = 546

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 26/84 (30%), Gaps = 14/84 (16%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPR---------CHDGTRRTVRYDID----- 99
            +     +RC  C  C A CP +AI      R                     I      
Sbjct: 16  WKISYRPDRCTLCGKCVAACPFKAIEAGVEKRRKVVSDHLTPEPKVEFKTIPVIRQVVNE 75

Query: 100 MIKCIYCGLCQEACPVDAIVEGPN 123
              C  CG+C+  CP +AI    N
Sbjct: 76  YEFCRGCGICERVCPNEAINPERN 99



 Score = 37.0 bits (84), Expect = 0.99,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 23/62 (37%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100
                 F+    +R+  N  E C  C +CE +CP +AI  E  P    G +         
Sbjct: 57  PEPKVEFKTIPVIRQVVNEYEFCRGCGICERVCPNEAINPERNPDSRFGAKYRATVADPY 116

Query: 101 IK 102
            +
Sbjct: 117 KR 118


>gi|224371301|ref|YP_002605465.1| ferredoxin (iron-sulfur cluster-binding protein) [Desulfobacterium
           autotrophicum HRM2]
 gi|223694018|gb|ACN17301.1| ferredoxin (iron-sulfur cluster-binding protein) [Desulfobacterium
           autotrophicum HRM2]
          Length = 293

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 14/62 (22%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C  C  C   C  +AI+ +              + +D I C  CG+C   CPVDAI
Sbjct: 64  DPGICTECGECLERCQFKAISED--------------FIVDPIACEGCGVCVHFCPVDAI 109

Query: 119 VE 120
             
Sbjct: 110 SF 111


>gi|163741314|ref|ZP_02148706.1| dihydropyrimidine dehydrogenase [Phaeobacter gallaeciensis 2.10]
 gi|161385667|gb|EDQ10044.1| dihydropyrimidine dehydrogenase [Phaeobacter gallaeciensis 2.10]
          Length = 434

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 8/63 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117
            ++ CI C  C A C       E              + +   +C+ C LC   CPV+  
Sbjct: 343 NQDDCIKCGRCFAAC-------EDTSHQAIAMSEDRVFTVKDDECVACNLCVNVCPVEGC 395

Query: 118 IVE 120
           I  
Sbjct: 396 ITM 398


>gi|150401223|ref|YP_001324989.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus aeolicus Nankai-3]
 gi|150013926|gb|ABR56377.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           aeolicus Nankai-3]
          Length = 131

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 11/65 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E++CI C  C   CP +AI++E                 D  +CI C  C + CP +A+
Sbjct: 78  NEDKCIDCGACVVHCPVKAISVEEYKII-----------FDYDECIGCKNCVKVCPTNAV 126

Query: 119 VEGPN 123
                
Sbjct: 127 EVLDE 131


>gi|126726909|ref|ZP_01742748.1| formate dehydrogenase, alpha subunit [Rhodobacterales bacterium
           HTCC2150]
 gi|126703867|gb|EBA02961.1| formate dehydrogenase, alpha subunit [Rhodobacterales bacterium
           HTCC2150]
          Length = 921

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 5/65 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114
             + CI C LC   C       +       G    + +D    +    C+ CG C +ACP
Sbjct: 147 NLDACIQCNLCVRACR-DVQVNDVIGLSGRGADAKITFDFDDPMGASSCVACGECVQACP 205

Query: 115 VDAIV 119
             A++
Sbjct: 206 TGALM 210


>gi|77465208|ref|YP_354711.1| 4Fe-4S ferredoxin, RnfC [Rhodobacter sphaeroides 2.4.1]
 gi|77389626|gb|ABA80810.1| 4Fe-4S ferredoxin, RnfC [Rhodobacter sphaeroides 2.4.1]
          Length = 517

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 30/99 (30%), Gaps = 13/99 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI C  C   CP      E   R            I ++ CI CG C   CP +  
Sbjct: 377 DTMPCIRCGRCAQACPVGLTPFELNARIQSEDLEGAG-RIGLLDCITCGCCSFTCPSNLP 435

Query: 119 VEGPNFEFATETRQELYYDKERL-LNNGDRWESEIVRNI 156
           +                Y K +L    G R + E  + +
Sbjct: 436 LVQTIH-----------YAKGKLAEAEGRRHQQEETKRL 463


>gi|150391754|ref|YP_001321803.1| aldo/keto reductase [Alkaliphilus metalliredigens QYMF]
 gi|149951616|gb|ABR50144.1| aldo/keto reductase [Alkaliphilus metalliredigens QYMF]
          Length = 335

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 26/84 (30%), Gaps = 8/84 (9%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLC-----EAICPAQAITIESGPRCHDGTRRT 93
           EK   +   R      +   G   C  C  C     E   PAQ +      R        
Sbjct: 235 EKIPLNKEERQHLEKLQKELGNTFCRRCGYCLPCPQEIDIPAQFLLEGYYTRYDLQDWAV 294

Query: 94  VRYD---IDMIKCIYCGLCQEACP 114
            RY    I    CI CG C+  CP
Sbjct: 295 ERYQGQSIKASDCIKCGKCEPRCP 318


>gi|295677294|ref|YP_003605818.1| formate dehydrogenase, alpha subunit [Burkholderia sp. CCGE1002]
 gi|295437137|gb|ADG16307.1| formate dehydrogenase, alpha subunit [Burkholderia sp. CCGE1002]
          Length = 1012

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     +G         +        +C+ CG C  
Sbjct: 214 YFTYDPSKCIVCNRCVRACEETQGTFALTITGRGFESRVAASENQPFMESECVSCGACVA 273

Query: 112 ACPVDAIVE 120
           ACP   + E
Sbjct: 274 ACPTATLQE 282


>gi|268324729|emb|CBH38317.1| ferredoxin [uncultured archaeon]
          Length = 128

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 10/70 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           ++     E++CI C  C +ICP      +   +            ++  KCI C +C   
Sbjct: 69  MKLIAWDEQKCIHCGACISICPTGVFKFDPSWQIE----------LEEDKCIRCEVCVNV 118

Query: 113 CPVDAIVEGP 122
           CP  A+    
Sbjct: 119 CPFRALACVD 128


>gi|296124215|ref|YP_003631993.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Planctomyces limnophilus DSM 3776]
 gi|296016555|gb|ADG69794.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Planctomyces limnophilus DSM 3776]
          Length = 1099

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/111 (15%), Positives = 29/111 (26%), Gaps = 21/111 (18%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------------ 77
                 +P +    S   R             +C+ C  C   C ++             
Sbjct: 767 PPLDSLWPDQPWQLSKENRAWGM----SIDLSKCVGCNACTIACQSENNVPIVGRDQVAR 822

Query: 78  ---ITIESGPRCHDGTRRTVRYDIDMIKCIYCGL--CQEACPVDAIVEGPN 123
              +      R   G     +  +  + C  C    C++ CPV A    P 
Sbjct: 823 GREMHWLRIDRYFKGPDSDPQMVMQPLTCQQCENAPCEQVCPVAATAHSPE 873


>gi|145637714|ref|ZP_01793367.1| electron transport complex protein RnfC [Haemophilus influenzae
           PittHH]
 gi|145269116|gb|EDK09066.1| electron transport complex protein RnfC [Haemophilus influenzae
           PittHH]
          Length = 561

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 12/101 (11%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C   CP   +  +               +  +  CI CG+C   CP   I  
Sbjct: 352 QACIRCSSCSDACPVN-LMPQQLYWFARSEDHKKSEEYALKDCIECGICAYVCPSH-IPL 409

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161
              F      RQE    K ++    ++ +      I  ++ 
Sbjct: 410 IQYF------RQE----KAKIWQIKEKQKKSDEAKIRFEAK 440


>gi|83774067|dbj|BAE64192.1| unnamed protein product [Aspergillus oryzae]
          Length = 624

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 3/71 (4%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP- 122
           I  + C   C      + +G  C + T  +    I    CI CG+C + CP  AI     
Sbjct: 36  IYSQKCRQECKKSCPVVRTGKLCIEVTPESKIAFISERLCIGCGICPKKCPFGAIHIINL 95

Query: 123 --NFEFATETR 131
             N E     R
Sbjct: 96  PTNLETQVTHR 106


>gi|134299508|ref|YP_001113004.1| hydrogenase [Desulfotomaculum reducens MI-1]
 gi|134052208|gb|ABO50179.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
           [Desulfotomaculum reducens MI-1]
          Length = 593

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 3/68 (4%)

Query: 59  GEERCIACKLCEAIC-PAQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115
              +CI C+ C A+C   Q +   S       T     ++  +    C  CG C   CP 
Sbjct: 147 DPRKCILCRRCVAVCEKVQGVKCISAVNRGFETTIAPPFNQGLFDVNCTMCGQCTLVCPT 206

Query: 116 DAIVEGPN 123
            AI E  +
Sbjct: 207 GAITEVDD 214


>gi|332527764|ref|ZP_08403803.1| formate dehydrogenase, alpha subunit [Rubrivivax benzoatilyticus
           JA2]
 gi|332112160|gb|EGJ12136.1| formate dehydrogenase, alpha subunit [Rubrivivax benzoatilyticus
           JA2]
          Length = 954

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 25/75 (33%), Gaps = 3/75 (4%)

Query: 55  RYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQE 111
            +     +CI C  C   C   Q     +       +R     D      +C+ CG C +
Sbjct: 159 YFAYDPSKCIVCNRCVRACEEVQGSFALTISGRGFASRVAAGMDEPFLESECVSCGACVQ 218

Query: 112 ACPVDAIVEGPNFEF 126
           ACP   + E    E 
Sbjct: 219 ACPTATLQEKSVIEM 233


>gi|325830275|ref|ZP_08163732.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1]
 gi|325487742|gb|EGC90180.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1]
          Length = 398

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 13/75 (17%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP--N 123
           C  C   C + A+   +G              ++  +CI CG C  ACP  AI      +
Sbjct: 36  CLRCVEACTSGALAYRAGELL-----------VEPERCIGCGTCATACPTCAIELRNPTD 84

Query: 124 FEFATETRQELYYDK 138
            E   + +  +   K
Sbjct: 85  AELTAQLKHSIVATK 99



 Score = 40.5 bits (93), Expect = 0.071,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 7/60 (11%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++C +C++C   CP  AI             R          C+ C LC+  CP  AI
Sbjct: 295 DAQKCSSCRMCAVFCPTGAIKKLDEGGVFGIVHR-------PSACMQCRLCEHICPEQAI 347


>gi|315186450|gb|EFU20210.1| electron transport complex, RnfABCDGE type, B subunit [Spirochaeta
           thermophila DSM 6578]
          Length = 289

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 21/65 (32%), Gaps = 9/65 (13%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            N    CI C  C  +C      I                 ID +KCI CG C   CP  
Sbjct: 218 KNCAVACIGCGKCVKVCETVTQAITLEHNLAY---------IDPVKCIACGKCVAECPTG 268

Query: 117 AIVEG 121
           AI   
Sbjct: 269 AIAAT 273



 Score = 38.9 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 26/79 (32%), Gaps = 12/79 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI----------DMIKCIYCGL 108
            EE+C AC +C  +CP      E  PR   G R  +                + CI CG 
Sbjct: 172 DEEKCTACGVCVEVCPRN--LFELRPRGKRGRRVWINCRNTEKGALARKNCAVACIGCGK 229

Query: 109 CQEACPVDAIVEGPNFEFA 127
           C + C             A
Sbjct: 230 CVKVCETVTQAITLEHNLA 248



 Score = 37.0 bits (84), Expect = 0.97,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 9/56 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
               C+    C   CP  AI+++           T    +D  KC  CG+C E CP
Sbjct: 141 CPYGCLHYGDCAEACPFDAISMDP---------VTGLPVVDEEKCTACGVCVEVCP 187


>gi|307718918|ref|YP_003874450.1| hypothetical protein STHERM_c12360 [Spirochaeta thermophila DSM
           6192]
 gi|306532643|gb|ADN02177.1| hypothetical protein STHERM_c12360 [Spirochaeta thermophila DSM
           6192]
          Length = 574

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 11/64 (17%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           R        C  C  C   CP +AI I  G           R ++    C+YCG C E C
Sbjct: 5   RLIYTVTSDCFDCYKCIRECPVKAIRISGG-----------RAEVVEELCLYCGHCVEVC 53

Query: 114 PVDA 117
           P  A
Sbjct: 54  PSGA 57


>gi|304314047|ref|YP_003849194.1| ATPase [Methanothermobacter marburgensis str. Marburg]
 gi|302587506|gb|ADL57881.1| predicted ATPase [Methanothermobacter marburgensis str. Marburg]
          Length = 591

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 1/60 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +RC   K C  +C      +           +T +  I    C  CG+C + CP  AI
Sbjct: 8   DHDRCQP-KKCNYVCIEYCPGVRMDEDTITIDEKTKKPLISEELCSGCGICTKRCPFKAI 66


>gi|303243875|ref|ZP_07330215.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus
           okinawensis IH1]
 gi|302485811|gb|EFL48735.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus
           okinawensis IH1]
          Length = 251

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 19/109 (17%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
           T+ +P +K +    +RG   L +  + E+     +   ++CPA A+  E           
Sbjct: 18  TVEFPSDKINLPKAYRGRPVLNQDASDEDV----QKVASLCPAGAVNPEDR--------- 64

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERL 141
                +D+ KC++CG CQ     D I    ++      R++L   K+ L
Sbjct: 65  ----TLDLGKCLFCGKCQTI-KQDFIKFTRDYRMFALKREDLII-KDIL 107


>gi|301064184|ref|ZP_07204627.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [delta
           proteobacterium NaphS2]
 gi|300441629|gb|EFK05951.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [delta
           proteobacterium NaphS2]
          Length = 1172

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 26/90 (28%), Gaps = 18/90 (20%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQ------AITIESGPRCHDGTRR----------TV 94
            A+       + CI C  C  +CP        A   +      D                
Sbjct: 675 IAINVPEWQPDNCIQCNQCAFVCPHAVIRPVLAAKEDLEEAPKDFVTIDAKGKELTDLQF 734

Query: 95  RYDIDMIKCIYCGLCQEACP--VDAIVEGP 122
           R  I  + C  CG C   CP    A++  P
Sbjct: 735 RIQISPLDCTGCGSCANTCPAKEKALLMKP 764


>gi|257790250|ref|YP_003180856.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Eggerthella lenta DSM 2243]
 gi|317489711|ref|ZP_07948214.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|257474147|gb|ACV54467.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella
           lenta DSM 2243]
 gi|316911177|gb|EFV32783.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
          Length = 398

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 13/75 (17%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP--N 123
           C  C   C + A+   +G              ++  +CI CG C  ACP  AI      +
Sbjct: 36  CLRCVEACTSGALAYRAGELL-----------VEPERCIGCGTCATACPTCAIELRNPTD 84

Query: 124 FEFATETRQELYYDK 138
            E   + +  +   K
Sbjct: 85  AELTAQLKHSIVATK 99



 Score = 40.5 bits (93), Expect = 0.072,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 7/60 (11%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++C +C++C   CP  AI             R          C+ C LC+  CP  AI
Sbjct: 295 DAQKCSSCRMCAVFCPTGAIKKLDEGGVFGIVHR-------PSACMQCRLCEHICPEQAI 347


>gi|225574363|ref|ZP_03782973.1| hypothetical protein RUMHYD_02432 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038419|gb|EEG48665.1| hypothetical protein RUMHYD_02432 [Blautia hydrogenotrophica DSM
           10507]
          Length = 130

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 10/66 (15%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+ C  C   CP  AIT  +             Y I+  KC+ CG C EACP   +V+  
Sbjct: 53  CVQCGKCAEACPEGAITQNAKG----------VYMINKKKCVGCGKCVEACPFGLVVKAD 102

Query: 123 NFEFAT 128
           + E+A+
Sbjct: 103 DKEYAS 108



 Score = 34.7 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 1/57 (1%)

Query: 63  CIACKLCEAIC-PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C+ACK CE  C  A     +    C     +        + C+ CG C EACP  AI
Sbjct: 12  CMACKECEIACSEAFYKEFDDTKSCIQIGVKKDGETPKPMVCVQCGKCAEACPEGAI 68


>gi|188585708|ref|YP_001917253.1| electron transport complex, RnfABCDGE type, C subunit
           [Natranaerobius thermophilus JW/NM-WN-LF]
 gi|179350395|gb|ACB84665.1| electron transport complex, RnfABCDGE type, C subunit
           [Natranaerobius thermophilus JW/NM-WN-LF]
          Length = 441

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 6/67 (8%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP---- 114
            E+ CI C  C   CPA  +         +G R     D + + CI CG C   CP    
Sbjct: 363 EEKPCINCGRCVDDCPAYLLPNVIAHYMENG-RVNESEDYNAMDCIECGCCTYICPANRP 421

Query: 115 -VDAIVE 120
            V  I  
Sbjct: 422 LVHYIRM 428


>gi|168333855|ref|ZP_02692098.1| hypothetical protein Epulo_03060 [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 224

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 11/74 (14%)

Query: 47  FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
           + G   +    +    CI+C  C+  C   AI  +              Y ID  +C  C
Sbjct: 159 YNGFDVIEAGLSIGSGCISCGKCKRECSFDAIYQDERQ-----------YKIDGSRCDEC 207

Query: 107 GLCQEACPVDAIVE 120
           G C   CP +AI  
Sbjct: 208 GSCFLVCPANAITH 221


>gi|170578894|ref|XP_001894586.1| ATP-binding cassette sub-family E member 1 (Ribonuclease 4
           inhibitor) [Brugia malayi]
 gi|158598731|gb|EDP36568.1| ATP-binding cassette sub-family E member 1 (Ribonuclease 4
           inhibitor), putative [Brugia malayi]
          Length = 610

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 22/56 (39%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           K C   C      +  G +C      +   +I    CI CG+C + CP +AI    
Sbjct: 28  KNCGLACKKSCPVVRMGKQCIVVESNSKMAEISETLCIGCGICVKKCPYEAIKIIN 83


>gi|147678971|ref|YP_001213186.1| hypothetical protein PTH_2636 [Pelotomaculum thermopropionicum SI]
 gi|146275068|dbj|BAF60817.1| Uncharacterized Fe-S center protein [Pelotomaculum
           thermopropionicum SI]
          Length = 372

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 11/73 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  C +C +C   C  +A+   +G               D   C  CG C   CP  A 
Sbjct: 193 DELACRSCGICADYCQWEALQYANG-----------LLSYDESACSGCGFCLLVCPHKAR 241

Query: 119 VEGPNFEFATETR 131
               +   A + R
Sbjct: 242 RLSRDDTAAFQRR 254


>gi|15896990|ref|NP_341595.1| hypothetical protein SSO0018 [Sulfolobus solfataricus P2]
 gi|284173857|ref|ZP_06387826.1| hypothetical protein Ssol98_04260 [Sulfolobus solfataricus 98/2]
 gi|13813147|gb|AAK40385.1| Hypothetical protein SSO0018 [Sulfolobus solfataricus P2]
 gi|261601644|gb|ACX91247.1| conserved hypothetical protein [Sulfolobus solfataricus 98/2]
          Length = 619

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQEACPVD 116
              CI C  C ++CP    T +       G      ++   D+  C  CGLC++ CPV 
Sbjct: 284 FNGCILCGKCVSVCPYGKQTNDVF-HTPLGFYSITYFEKENDLANCHMCGLCEQVCPVR 341


>gi|146297119|ref|YP_001180890.1| thiamine pyrophosphate binding domain-containing protein
           [Caldicellulosiruptor saccharolyticus DSM 8903]
 gi|145410695|gb|ABP67699.1| thiamine pyrophosphate enzyme domain protein TPP-binding protein
           [Caldicellulosiruptor saccharolyticus DSM 8903]
          Length = 598

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 24/68 (35%), Gaps = 10/68 (14%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
                Y    E+CI CK C  +    AI+ +                ID   C  CGLC 
Sbjct: 534 ERYNGYYRINEKCINCKACLNVTGCPAISEDEDKNVF----------IDKTLCNGCGLCA 583

Query: 111 EACPVDAI 118
             CP  AI
Sbjct: 584 NFCPRMAI 591


>gi|118579215|ref|YP_900465.1| nitroreductase [Pelobacter propionicus DSM 2379]
 gi|118501925|gb|ABK98407.1| nitroreductase [Pelobacter propionicus DSM 2379]
          Length = 275

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 26/76 (34%), Gaps = 7/76 (9%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
            F  E  +         C+   +C A+CP +    +S       T           KCI 
Sbjct: 2   YFSEEKRMSLITIDHTTCLRDGICHAVCPLRLFETDSEGFPEFRTGAD-------SKCIA 54

Query: 106 CGLCQEACPVDAIVEG 121
           CG C   CPV A+   
Sbjct: 55  CGHCVAVCPVSAVHHQ 70


>gi|189499559|ref|YP_001959029.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing
           protein [Chlorobium phaeobacteroides BS1]
 gi|189495000|gb|ACE03548.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Chlorobium phaeobacteroides BS1]
          Length = 1182

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/102 (16%), Positives = 26/102 (25%), Gaps = 18/102 (17%)

Query: 31  KTTINYPFEKGSTSPRFRGEHAL--RRYPNGEERCIACKLCEAICPAQ------------ 76
             +   P      S     +  L  +      + CI C  C  +CP              
Sbjct: 658 PVSQMPPDGTFPVSTSKFEKRNLAEKVPVWEADVCIQCGKCAFMCPHGVIRSKAYDPKYL 717

Query: 77  --AITIESGPRCHDGTRRTVRYDIDM--IKCIYCGLCQEACP 114
             A                ++Y I +    C  C +C   CP
Sbjct: 718 GNAPKTFKNIDAKGKNWEGLKYTIQVAVEDCTGCEICAHICP 759


>gi|46201903|ref|ZP_00208299.1| COG1145: Ferredoxin [Magnetospirillum magnetotacticum MS-1]
          Length = 236

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 9/85 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            + +C  C  C + CPA+A++                  I    C+ CGLC+  CP  A+
Sbjct: 82  DQAKCTLCMACISACPAKALSGHPDKPSLG---------ILEANCVQCGLCRVTCPEKAV 132

Query: 119 VEGPNFEFATETRQELYYDKERLLN 143
              P   F    R      +E    
Sbjct: 133 TLVPRLAFGPNARVRQVLKEEEPYE 157


>gi|325266549|ref|ZP_08133226.1| iron-sulfur cluster binding protein [Kingella denitrificans ATCC
           33394]
 gi|324981992|gb|EGC17627.1| iron-sulfur cluster binding protein [Kingella denitrificans ATCC
           33394]
          Length = 484

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 26/82 (31%), Gaps = 14/82 (17%)

Query: 62  RCIACKLCEAICPA-----QAITIESGPRCHDGTRRTVRYDIDMIK-----CIYCGLCQE 111
           +CI C  C   CP       A    + P             ++  +     C  CG C E
Sbjct: 318 QCIRCGACMNHCPVYTRIGGAAYGTTYPGPIGEILSPHLLGLEPTRDLPTACTMCGACVE 377

Query: 112 ACPVDAIVEGPNFEFATETRQE 133
            CPV      P  E     R+E
Sbjct: 378 VCPVKI----PITEQMQRLREE 395


>gi|323704596|ref|ZP_08116174.1| MinD family protein [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323536058|gb|EGB25831.1| MinD family protein [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 281

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/97 (20%), Positives = 26/97 (26%), Gaps = 23/97 (23%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
           Y F                                ++C  C  C   C   A+T      
Sbjct: 43  YLFLKPEIEKVKDVNVMIPD------------IDYDKCTLCGECTRACRFGALT------ 84

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                +   +  I    C  CG C E CP +AI E P
Sbjct: 85  -----KLIKKILIFDHLCHSCGACYEICPYNAIKEIP 116


>gi|300697562|ref|YP_003748223.1| tugsten containing formate dehydrogenase alpha subunit; 2Fe-2S
           ferredoxin N-term domain (fdwA) [Ralstonia solanacearum
           CFBP2957]
 gi|299074286|emb|CBJ53833.1| putative tugsten containing formate dehydrogenase alpha subunit;
           2Fe-2S ferredoxin N-term domain (fdwA) [Ralstonia
           solanacearum CFBP2957]
          Length = 892

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 27/81 (33%), Gaps = 4/81 (4%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---YDIDMIKCIYCGLCQEACPVD 116
            +RCI C+ C  IC           R      R        +    C+ CG C ++CP  
Sbjct: 139 MDRCIYCERCVRICEEVQGQFVWEARGRGDATRIATANGPTMLSAGCVSCGACVDSCPSG 198

Query: 117 AIVE-GPNFEFATETRQELYY 136
           A+ +     E     R    Y
Sbjct: 199 ALFDKRRIVEPTAWARTTCTY 219


>gi|257452980|ref|ZP_05618279.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium sp.
           3_1_5R]
 gi|317059520|ref|ZP_07924005.1| nitrogen fixation iron-sulfur protein RNFC [Fusobacterium sp.
           3_1_5R]
 gi|313685196|gb|EFS22031.1| nitrogen fixation iron-sulfur protein RNFC [Fusobacterium sp.
           3_1_5R]
          Length = 436

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 31/92 (33%), Gaps = 9/92 (9%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEER---CIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
           E+        G  AL        +   CI C  C ++CP   +      R     +    
Sbjct: 338 EEAPVIKGTSGLLALTTEETNPYKPKACIGCGKCVSVCPMS-LEPVMFARLAAFQQWEGL 396

Query: 96  YDIDMIKCIYCGLCQEACP-----VDAIVEGP 122
            +  ++ CI CG C   CP      +AI  G 
Sbjct: 397 QNYHLMDCIECGSCAFICPANRPLTEAIKIGK 428


>gi|255972896|ref|ZP_05423482.1| formate dehydrogenase [Enterococcus faecalis T1]
 gi|255963914|gb|EET96390.1| formate dehydrogenase [Enterococcus faecalis T1]
          Length = 895

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 3/92 (3%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV 94
           F +G   P  + + +   +    E+CI C+ C  +C  +        +          + 
Sbjct: 122 FTEGKRMPCHQEDTSNPFFSYDPEKCIMCRRCARVCQLRQGRDVLSIANRGFETKMMPSY 181

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
               D   C  CG C  +CP  A+      E+
Sbjct: 182 GQAFDQSICESCGNCVSSCPTGALTAKDMKEY 213


>gi|311232771|gb|ADP85625.1| iron-sulfur cluster-binding protein, putative [Desulfovibrio
           vulgaris RCH1]
          Length = 452

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 38/124 (30%), Gaps = 37/124 (29%)

Query: 58  NGEERCIACKLCEAICPAQAIT-----------------------IESGPRCHDGTRRTV 94
              + C  C LC   CP  A+                         E+        +   
Sbjct: 289 CDADACTGCGLCVRACPVDALHVVRKDGQRTASNETVDARGDVPDDEAASSTARRGKARR 348

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVR 154
           R ++D   C+ CG+C   CP  A+          E R    +  E      D +E  I++
Sbjct: 349 RLEVDTSVCLGCGVCALRCPTGALRL--------EERPARVFHPE------DSFERVILQ 394

Query: 155 NIVT 158
           ++  
Sbjct: 395 SLER 398



 Score = 37.8 bits (86), Expect = 0.57,   Method: Composition-based stats.
 Identities = 12/23 (52%), Positives = 13/23 (56%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIV 119
             D   C  CGLC  ACPVDA+ 
Sbjct: 288 TCDADACTGCGLCVRACPVDALH 310


>gi|260589729|ref|ZP_05855642.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Blautia hansenii
           DSM 20583]
 gi|331083161|ref|ZP_08332277.1| hypothetical protein HMPREF0992_01201 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260539969|gb|EEX20538.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Blautia hansenii
           DSM 20583]
 gi|330404550|gb|EGG84090.1| hypothetical protein HMPREF0992_01201 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 252

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 27/73 (36%), Gaps = 12/73 (16%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
             +R  + +   P   + C  C LC  +CP  AI  ES  +                KCI
Sbjct: 163 KPYRKYNGVPLKPKAGKDCKGCGLCAQVCPVGAIPAESPKKTDK------------SKCI 210

Query: 105 YCGLCQEACPVDA 117
            C  C + CP  A
Sbjct: 211 SCMRCIQVCPKKA 223



 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 6/53 (11%)

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIK------CIYCGLCQEACPVDAIV 119
              +  + +       G +   +Y+   +K      C  CGLC + CPV AI 
Sbjct: 145 IAHKIKSGDEKEISVPGNKPYRKYNGVPLKPKAGKDCKGCGLCAQVCPVGAIP 197


>gi|218782860|ref|YP_002434178.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Desulfatibacillum alkenivorans AK-01]
 gi|218764244|gb|ACL06710.1| Indolepyruvate ferredoxin oxidoreductase, alpha/beta subunit
           [Desulfatibacillum alkenivorans AK-01]
          Length = 617

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 11/80 (13%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E      +       + +    E+C   +LC       A+ +E+               I
Sbjct: 544 ELCPLYAKALKRPVKKPFRIDMEKCKDHRLCVDALGCPAMYVENNKVA-----------I 592

Query: 99  DMIKCIYCGLCQEACPVDAI 118
           +  +CI C +C + CP  AI
Sbjct: 593 NAEQCIGCAVCAQVCPEHAI 612


>gi|167752244|ref|ZP_02424371.1| hypothetical protein ALIPUT_00486 [Alistipes putredinis DSM 17216]
 gi|167660485|gb|EDS04615.1| hypothetical protein ALIPUT_00486 [Alistipes putredinis DSM 17216]
          Length = 589

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 5/69 (7%)

Query: 59  GEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
             E+CI C+ CE +C       A+++                 I    C+ CG C   CP
Sbjct: 148 NMEKCILCRRCETVCNQVQTVGALSVVGRGFTSVLCTAFNDP-ILTTNCVNCGQCVAVCP 206

Query: 115 VDAIVEGPN 123
             A+ E  N
Sbjct: 207 TSALSENSN 215


>gi|53803000|ref|YP_115208.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methylococcus capsulatus str. Bath]
 gi|53756761|gb|AAU91052.1| 4Fe-4S binding domain protein [Methylococcus capsulatus str. Bath]
          Length = 450

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 7/67 (10%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEF-ATETRQELYYDKERLLNNGDRWESEIVRNI 156
           ID   C+ C LC  ACP  AI    +F+F A  T      +    +     W   +  + 
Sbjct: 193 IDYNPCLECKLCVGACPTGAIGMDGHFDFSACYTH-----NYREFMGGFSDWAETVAAST 247

Query: 157 VTDSPYR 163
              S YR
Sbjct: 248 SA-SDYR 253


>gi|73749240|ref|YP_308479.1| putative reductive dehalogenase [Dehalococcoides sp. CBDB1]
 gi|73660956|emb|CAI83563.1| putative reductive dehalogenase [Dehalococcoides sp. CBDB1]
          Length = 460

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 6/68 (8%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI------YC 106
           +      +E C  CK C   CP+QAI+++  P     T +++R+  D  KC+       C
Sbjct: 344 MPIDFGLQEFCKVCKKCAENCPSQAISMDDEPSEVITTVKSIRWLQDEKKCLARRLAYGC 403

Query: 107 GLCQEACP 114
             CQ  CP
Sbjct: 404 AKCQSVCP 411


>gi|116051507|ref|YP_789657.1| electron transport complex protein RnfB [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|313108854|ref|ZP_07794838.1| putative NADH:ubiquinone oxidoreductase, subunit RnfB [Pseudomonas
           aeruginosa 39016]
 gi|122260647|sp|Q02QX9|RNFB_PSEAB RecName: Full=Electron transport complex protein rnfB
 gi|115586728|gb|ABJ12743.1| putative NADH:ubiquinone oxidoreductase, subunit RnfB [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|310881340|gb|EFQ39934.1| putative NADH:ubiquinone oxidoreductase, subunit RnfB [Pseudomonas
           aeruginosa 39016]
          Length = 188

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 10/67 (14%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           R     E  CI C  C   CP  AI   +           + + +   +C  C LC E C
Sbjct: 104 RVAYIREAECIGCTKCIQACPVDAIVGAA----------RLMHTVIADECTGCDLCLEPC 153

Query: 114 PVDAIVE 120
           PVD I  
Sbjct: 154 PVDCIEM 160



 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 14/38 (36%), Positives = 16/38 (42%)

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           E  P             I   +CI C  C +ACPVDAI
Sbjct: 91  EPEPLDAAEETPPRVAYIREAECIGCTKCIQACPVDAI 128


>gi|317472987|ref|ZP_07932290.1| iron only hydrogenase large subunit domain-containing protein
           [Anaerostipes sp. 3_2_56FAA]
 gi|316899532|gb|EFV21543.1| iron only hydrogenase large subunit domain-containing protein
           [Anaerostipes sp. 3_2_56FAA]
          Length = 572

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 35/100 (35%), Gaps = 6/100 (6%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA---QAITIESGPRCHDGTRRT 93
           PF+K      +     L R  N   +CI C  C  IC       +   SG         +
Sbjct: 122 PFKKEFVHKEWDKTFPLIRDAN---KCIKCMRCVQICDKVQGLNVWDVSGTGARTTVDVS 178

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
              DI +  C  CG C   CPV A+ E  +        ++
Sbjct: 179 RNRDIRVADCSLCGQCITHCPVGALRERDDTSMLFSALED 218


>gi|312621606|ref|YP_004023219.1| hypothetical protein Calkro_0500 [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202073|gb|ADQ45400.1| protein of unknown function DUF362 [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 375

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 11/66 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI C  C   CPAQAI + S               +D+ KCI C  C E CP  AI
Sbjct: 314 DINICIGCAECFNACPAQAIEMRSRKAY-----------VDLKKCIRCYCCHELCPAKAI 362

Query: 119 VEGPNF 124
               +F
Sbjct: 363 KIKRSF 368


>gi|307299068|ref|ZP_07578870.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermotogales
           bacterium mesG1.Ag.4.2]
 gi|306915493|gb|EFN45878.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermotogales
           bacterium mesG1.Ag.4.2]
          Length = 356

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 12/53 (22%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           + C+AC +CE  CP  AIT++   R            ID   CI CG C   C
Sbjct: 192 KNCVACGMCEKNCPTGAITVDRVAR------------IDYEVCIGCGQCIAMC 232



 Score = 33.9 bits (76), Expect = 6.7,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 14/32 (43%)

Query: 87  HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                   +  +    C+ CG+C++ CP  AI
Sbjct: 178 KMEQHSESKPVVREKNCVACGMCEKNCPTGAI 209


>gi|304315174|ref|YP_003850321.1| acetyl-CoA decarbonylase/synthase complex, alpha subunit
           [Methanothermobacter marburgensis str. Marburg]
 gi|302588633|gb|ADL59008.1| acetyl-CoA decarbonylase/synthase complex, alpha subunit
           [Methanothermobacter marburgensis str. Marburg]
          Length = 311

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 36/106 (33%), Gaps = 6/106 (5%)

Query: 28  FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH 87
           F+       P +   T  R   +       +    C  C  C  +CPA    +E+     
Sbjct: 28  FRVNCVRCSPCDSNCTPSRKPEKQKDIDLNSVLGYCELCGECNRVCPAMLPIMEAIDDAK 87

Query: 88  DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
           +G  R +        C  CG C E CPV      P  +   E+R E
Sbjct: 88  NGGLRAIGT--LYESCSGCGRCMEVCPVG----VPILDIIRESRGE 127


>gi|291544586|emb|CBL17695.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit
           [Ruminococcus sp. 18P13]
          Length = 597

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/96 (26%), Positives = 36/96 (37%), Gaps = 15/96 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            LRY F+ +   +   ++            L  Y    ++C  C  C  +CPA AI+   
Sbjct: 514 TLRY-FRDEYIAHIVEKRCPAGVC----KDLLSYEIQADKCKGCTACARVCPAGAISGS- 567

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                        + ID  KC+ CG C E C   AI
Sbjct: 568 ---------VKNPHTIDKSKCLKCGACIEKCRFGAI 594


>gi|281412258|ref|YP_003346337.1| hydrogenase, Fe-only [Thermotoga naphthophila RKU-10]
 gi|281373361|gb|ADA66923.1| hydrogenase, Fe-only [Thermotoga naphthophila RKU-10]
          Length = 582

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 3/65 (4%)

Query: 59  GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDI--DMIKCIYCGLCQEACPV 115
              +C+ C+ C  +C   Q + I S       T     +D+      CI CG C   CP 
Sbjct: 144 DLSKCVKCQRCVRVCSEIQGVNIYSMVERGYRTYPGTPFDMPVYETDCIGCGQCAAFCPT 203

Query: 116 DAIVE 120
            AIVE
Sbjct: 204 GAIVE 208


>gi|261402606|ref|YP_003246830.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus vulcanius M7]
 gi|261369599|gb|ACX72348.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus vulcanius M7]
          Length = 398

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/132 (23%), Positives = 47/132 (35%), Gaps = 18/132 (13%)

Query: 9   SFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKL 68
           S  +L EF        R + K                R+R    + +YP    RCI+C+ 
Sbjct: 4   SLWYLYEFAR------RKWIKRFINAKSDKSSYIPPERYRKVPPIVKYPE---RCISCEG 54

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
           C+  CPA A+ +                 ID   CI C  C E CP   +      +   
Sbjct: 55  CKESCPAFAVEMIYSEEFQKNIPL-----IDEGSCIACANCVEMCPTGVL----EIDKHR 105

Query: 129 ETRQELYYDKER 140
              + L++DK +
Sbjct: 106 IETEGLFFDKPK 117



 Score = 41.2 bits (95), Expect = 0.042,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 3/62 (4%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C+ C  C  +CP  AI            R+ + Y +D   CI C +CQ+ C   AI   
Sbjct: 240 NCVKCGFCIDVCPTTAIRTHKEIVPK---RKDICYMVDEDMCIGCRICQKVCGSGAIKIS 296

Query: 122 PN 123
             
Sbjct: 297 KE 298



 Score = 38.5 bits (88), Expect = 0.30,   Method: Composition-based stats.
 Identities = 22/90 (24%), Positives = 31/90 (34%), Gaps = 9/90 (10%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P     T      +     Y   E+ CI C++C+ +C + AI I    +          
Sbjct: 251 CPTTAIRTHKEIVPKRKDICYMVDEDMCIGCRICQKVCGSGAIKISKETKLPY------- 303

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
             I    C+  G C   CPV AI      E
Sbjct: 304 --IIPDLCVRGGACARECPVGAIKIVKPEE 331



 Score = 38.2 bits (87), Expect = 0.44,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 11/75 (14%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           +  T   F  +         +E C+ C  CE  CP   I            R+  RY I+
Sbjct: 105 RIETEGLFFDKPKYNNLLIDDEVCVHCGNCERACPINVIE-----------RKEGRYVIN 153

Query: 100 MIKCIYCGLCQEACP 114
           M +CI C  C  ACP
Sbjct: 154 MSQCISCKECINACP 168


>gi|241206609|ref|YP_002977705.1| formate dehydrogenase, alpha subunit [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240860499|gb|ACS58166.1| formate dehydrogenase, alpha subunit [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 959

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 3/79 (3%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRT--VRYDIDMI 101
                + +   +     +CI C  C   C   Q     +      G+R +  +       
Sbjct: 160 KWMPKDESNPYFTYDPSKCIVCSRCVRACEEVQGTFALTIEGRGFGSRVSPGMHEHFIDS 219

Query: 102 KCIYCGLCQEACPVDAIVE 120
           +C+ CG C +ACP   + E
Sbjct: 220 ECVSCGACVQACPTATLTE 238


>gi|126459018|ref|YP_001055296.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pyrobaculum calidifontis JCM 11548]
 gi|126248739|gb|ABO07830.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum
           calidifontis JCM 11548]
          Length = 275

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 24/84 (28%), Gaps = 23/84 (27%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC---------GLC 109
            ++ CI C  CE  CP          +                KC +C           C
Sbjct: 120 NKDLCIGCGYCENACPFNVPKKGQDGK--------------YYKCTFCVDRIQNGRAPAC 165

Query: 110 QEACPVDAIVEGPNFEFATETRQE 133
            E CP      GP  E     R+E
Sbjct: 166 VEVCPTGVFTFGPIEEVTKAAREE 189



 Score = 39.7 bits (91), Expect = 0.13,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 21/59 (35%), Gaps = 12/59 (20%)

Query: 60  EERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              C+ C    C   CPA AI                   I+   CI CG C+ ACP +
Sbjct: 89  PYNCLHCVDAPCARACPAGAIVTTPEGAVV----------INKDLCIGCGYCENACPFN 137


>gi|116254124|ref|YP_769962.1| NAD-dependent formate dehydrogenase alpha subunit [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115258772|emb|CAK09878.1| putative NAD-dependent formate dehydrogenase alpha subunit
           [Rhizobium leguminosarum bv. viciae 3841]
          Length = 959

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 3/79 (3%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRT--VRYDIDMI 101
                + +   +     +CI C  C   C   Q     +      G+R +  +       
Sbjct: 160 KWMPKDESNPYFTYDPSKCIVCSRCVRACEEVQGTFALTIEGRGFGSRVSPGMHEHFIDS 219

Query: 102 KCIYCGLCQEACPVDAIVE 120
           +C+ CG C +ACP   + E
Sbjct: 220 ECVSCGACVQACPTATLTE 238


>gi|89901860|ref|YP_524331.1| 4Fe-4S ferredoxin [Rhodoferax ferrireducens T118]
 gi|89346597|gb|ABD70800.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodoferax ferrireducens
           T118]
          Length = 545

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 8/66 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +RC  C  C  +CP  A+             +T +       C+ CGLC   CP +A+
Sbjct: 418 NAQRCTLCFACVNLCPTSALKAVDA--------KTQQLVFQESACVQCGLCVVGCPEEAL 469

Query: 119 VEGPNF 124
                F
Sbjct: 470 SLQARF 475



 Score = 38.9 bits (89), Expect = 0.21,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 33/108 (30%), Gaps = 24/108 (22%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           +G      C  C  +C  QAI                   ID   C  C  C  ACP  A
Sbjct: 171 HGVSGFQGCTRCLDVCSVQAIASAGN-----------TVRIDPYLCQGCATCTLACPTGA 219

Query: 118 IVEGPNFEFATETRQELYYDKERLLNNGDR-------WESEIVRNIVT 158
           +       F   TR  L    E+ L+N D           ++  ++  
Sbjct: 220 LS------FKFPTRDALGRRLEQTLSNPDTAKTVLIVHSRQLAASVQA 261


>gi|323485418|ref|ZP_08090766.1| hypothetical protein HMPREF9474_02517 [Clostridium symbiosum
           WAL-14163]
 gi|323694183|ref|ZP_08108360.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Clostridium symbiosum WAL-14673]
 gi|323401281|gb|EGA93631.1| hypothetical protein HMPREF9474_02517 [Clostridium symbiosum
           WAL-14163]
 gi|323501760|gb|EGB17645.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Clostridium symbiosum WAL-14673]
          Length = 56

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 11/58 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C++C  C   CP  AI+   G            Y+ID   CI CG C  +CP  AI
Sbjct: 7   DSCVSCGACAGDCPVGAISQGDGK-----------YEIDANTCIDCGSCAGSCPTGAI 53


>gi|306820590|ref|ZP_07454220.1| ferredoxin [Eubacterium yurii subsp. margaretiae ATCC 43715]
 gi|304551371|gb|EFM39332.1| ferredoxin [Eubacterium yurii subsp. margaretiae ATCC 43715]
          Length = 56

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 11/58 (18%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
            + CI+C  CE  CP  AI+               +Y ID   CI CG C   CPVDA
Sbjct: 6   HDNCISCGACEPECPVGAISQGD-----------TQYIIDASACIDCGACASVCPVDA 52


>gi|288931276|ref|YP_003435336.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Ferroglobus placidus DSM 10642]
 gi|288893524|gb|ADC65061.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Ferroglobus placidus DSM 10642]
          Length = 97

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 7/66 (10%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                EE+CI C  C   CP   I +                 +D   C  CG+C   CP
Sbjct: 28  WAFVDEEKCIGCGRCVKFCPEPCIELVEKD-------GNKVAKVDHDYCKGCGICASVCP 80

Query: 115 VDAIVE 120
           V+AI  
Sbjct: 81  VNAIRM 86



 Score = 35.5 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/45 (28%), Positives = 16/45 (35%)

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            A       +   G   T    +D  KCI CG C + CP   I  
Sbjct: 9   GASNPPKTTQMKTGDWGTEWAFVDEEKCIGCGRCVKFCPEPCIEL 53


>gi|296109799|ref|YP_003616748.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus infernus ME]
 gi|295434613|gb|ADG13784.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus infernus ME]
          Length = 81

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 21/67 (31%), Gaps = 7/67 (10%)

Query: 61  ERCIACKLCEAICPAQAITIE-------SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           ERC  C  C   CP  A                           +    C  CG C EAC
Sbjct: 11  ERCHGCGNCVVACPVNAQDPNTWGGKGSKSEDVVIRVENGTVELVKPELCGGCGACVEAC 70

Query: 114 PVDAIVE 120
           PVDAI  
Sbjct: 71  PVDAIKL 77


>gi|221369207|ref|YP_002520303.1| Electron transport complex, RnfABCDGE type, D subunit [Rhodobacter
           sphaeroides KD131]
 gi|221162259|gb|ACM03230.1| Electron transport complex, RnfABCDGE type, D subunit [Rhodobacter
           sphaeroides KD131]
          Length = 517

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 30/99 (30%), Gaps = 13/99 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI C  C   CP      E   R            I ++ CI CG C   CP +  
Sbjct: 377 DTMPCIRCGRCAQACPVGLTPFELNARIQSEDLEGAG-RIGLLDCITCGCCSFTCPSNLP 435

Query: 119 VEGPNFEFATETRQELYYDKERLLNN-GDRWESEIVRNI 156
           +                Y K +L    G R + E  + +
Sbjct: 436 LVQTIH-----------YAKGKLAEAEGRRHQQEETKRL 463


>gi|154494980|ref|ZP_02033985.1| hypothetical protein PARMER_04026 [Parabacteroides merdae ATCC
           43184]
 gi|154085530|gb|EDN84575.1| hypothetical protein PARMER_04026 [Parabacteroides merdae ATCC
           43184]
          Length = 257

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 12/60 (20%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI+C LCE ICP   I++++G              +    C+ C  C   CPV AI  G 
Sbjct: 196 CISCGLCERICPTGTISMQAGKP------------VWTDTCVQCVACIHRCPVRAIEYGK 243


>gi|197117854|ref|YP_002138281.1| electron transfer flavoprotein subunit alpha [Geobacter
           bemidjiensis Bem]
 gi|197087214|gb|ACH38485.1| electron transfer flavoprotein, alpha subunit [Geobacter
           bemidjiensis Bem]
          Length = 447

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 38/109 (34%), Gaps = 27/109 (24%)

Query: 62  RCIACK-LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           +CIAC   CE+ CP   I +                 I   KCI C  C + C   A+  
Sbjct: 20  KCIACGARCESSCPVSGIQMSEAGEPS----------IVDGKCIGCAKCVKVCAAGALEM 69

Query: 121 GPNFEFATETRQELYYDKERLLNNG------DRWESEIVRNIVTDSPYR 163
                    T +EL   K+    +G      D  E E+   +   + YR
Sbjct: 70  -------FYTPEELELLKQWEAQHGAVEEELDPAEKELRAKL---AQYR 108


>gi|254252943|ref|ZP_04946261.1| hypothetical protein BDAG_02189 [Burkholderia dolosa AUO158]
 gi|124895552|gb|EAY69432.1| hypothetical protein BDAG_02189 [Burkholderia dolosa AUO158]
          Length = 984

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 23/76 (30%), Gaps = 3/76 (3%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCI 104
           R + +   +     +CI C  C   C     T     +                   +C+
Sbjct: 180 RKDESNPYFTYDPSKCIVCNRCVRACEETQGTFALTIAARGFESRVAAGESEPFMESECV 239

Query: 105 YCGLCQEACPVDAIVE 120
            CG C  ACP   + E
Sbjct: 240 SCGACVAACPTATLQE 255


>gi|154419790|ref|XP_001582911.1| hypothetical protein [Trichomonas vaginalis G3]
 gi|121917149|gb|EAY21925.1| hypothetical protein TVAG_249850 [Trichomonas vaginalis G3]
          Length = 599

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 23/70 (32%), Gaps = 3/70 (4%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +R      +RC   K C+  C        SG              I    CI CG+C + 
Sbjct: 6   IRLAVVNADRCKP-KKCQKECKGVCPVNRSGKN--CIKVPVTGCAISEALCIGCGMCVKK 62

Query: 113 CPVDAIVEGP 122
           CP  AI    
Sbjct: 63  CPFHAIQIIN 72


>gi|134045341|ref|YP_001096827.1| formate dehydrogenase subunit beta (F420) [Methanococcus
           maripaludis C5]
 gi|132662966|gb|ABO34612.1| formate dehydrogenase, beta subunit (F420) [Methanococcus
           maripaludis C5]
          Length = 387

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 11/98 (11%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPA--------QAITIESGPRCHDG-TRRTVRYDID 99
               +  +     +CI C  C  +CP          A  ++SG    +    + VR    
Sbjct: 272 EYPTIEEWNRQWNKCIKCYGCRDVCPVCFCRECALNADYLDSGSIPPNPIMFQGVRMSHM 331

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATE-TRQELYY 136
              C+ CG C++ CP   I     F    E TR+EL Y
Sbjct: 332 AFSCVNCGQCEDVCP-MEIPVARIFHKVQEKTRKELGY 368


>gi|11498271|ref|NP_069497.1| heterodisulfide reductase, subunit A (hdrA-1) [Archaeoglobus
           fulgidus DSM 4304]
 gi|2649956|gb|AAB90578.1| heterodisulfide reductase, subunit A (hdrA-1) [Archaeoglobus
           fulgidus DSM 4304]
          Length = 404

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 25/71 (35%), Gaps = 7/71 (9%)

Query: 60  EERCIACKLCEAICPAQAITIE-------SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
            E C AC  C+ +CP +A                 +      +Y ID   C  CG C  A
Sbjct: 101 NENCTACGACKEVCPIEAPDEYNFGLKKKKAIDLPNIMAMPFQYYIDDKYCNKCGECVSA 160

Query: 113 CPVDAIVEGPN 123
           C  +AI     
Sbjct: 161 CKYNAIDLNEE 171


>gi|20807368|ref|NP_622539.1| ferredoxin 2 [Thermoanaerobacter tengcongensis MB4]
 gi|254478276|ref|ZP_05091656.1| Putative Fe-S cluster family protein [Carboxydibrachium pacificum
           DSM 12653]
 gi|20515886|gb|AAM24143.1| Ferredoxin 2 [Thermoanaerobacter tengcongensis MB4]
 gi|214035741|gb|EEB76435.1| Putative Fe-S cluster family protein [Carboxydibrachium pacificum
           DSM 12653]
          Length = 431

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 11/59 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
            ++RC  C  C   CP +AI +  G              I   +CI CG C   CP  A
Sbjct: 10  DKDRCRGCTNCIKRCPTEAIRVREGKA-----------RIINERCIDCGECIRVCPYHA 57


>gi|16330687|ref|NP_441415.1| bidirectional hydrogenase complex protein HoxU [Synechocystis sp.
           PCC 6803]
 gi|1653179|dbj|BAA18095.1| hydrogenase subunit [Synechocystis sp. PCC 6803]
 gi|1771718|emb|CAA66210.1| hydrogenase subunit [Synechocystis sp. PCC 6803]
          Length = 238

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 4/73 (5%)

Query: 55  RYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLCQ 110
            +     RCI C  C  +C     A   +   R  +    +        +  C  CG C 
Sbjct: 140 MFGIDHNRCILCTRCVRVCDEIEGAHVWDVAYRGAECKIVSGLNQPWGTVDACTSCGKCV 199

Query: 111 EACPVDAIVEGPN 123
           +ACP  +I     
Sbjct: 200 DACPTGSIFHKGE 212


>gi|325959692|ref|YP_004291158.1| NiL domain-containing protein [Methanobacterium sp. AL-21]
 gi|325331124|gb|ADZ10186.1| NIL domain-containing protein [Methanobacterium sp. AL-21]
          Length = 128

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 10/68 (14%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
              R     EE CI C  C ++CP  AI +E         +          +CI C LC 
Sbjct: 67  PIKRVVKKDEEMCIDCGACVSLCPVHAIIVEDDWTVEVKDK----------ECIGCKLCS 116

Query: 111 EACPVDAI 118
            +CP  AI
Sbjct: 117 YSCPTKAI 124



 Score = 35.5 bits (80), Expect = 2.3,   Method: Composition-based stats.
 Identities = 10/33 (30%), Positives = 16/33 (48%)

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
              CI CG C   CPV AI+   ++    + ++
Sbjct: 76  EEMCIDCGACVSLCPVHAIIVEDDWTVEVKDKE 108


>gi|308125451|ref|ZP_05775364.2| electron transport complex protein RnfC [Vibrio parahaemolyticus
           K5030]
 gi|308111312|gb|EFO48852.1| electron transport complex protein RnfC [Vibrio parahaemolyticus
           K5030]
          Length = 528

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            CI C  C   CPA  +  +               ++++  CI CG C   CP
Sbjct: 36  ECIRCGQCAEACPAS-LLPQQLQWHAKAEEYDKLEELNLKDCIECGACAFVCP 87



 Score = 34.3 bits (77), Expect = 6.0,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 19/43 (44%)

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           +  +Q    ++       TR  +      ++CI CG C EACP
Sbjct: 6   LPHSQVPITKTANCILAPTRHEISAHQYEMECIRCGQCAEACP 48


>gi|302343175|ref|YP_003807704.1| electron transport complex, RnfABCDGE type, B subunit
           [Desulfarculus baarsii DSM 2075]
 gi|301639788|gb|ADK85110.1| electron transport complex, RnfABCDGE type, B subunit
           [Desulfarculus baarsii DSM 2075]
          Length = 695

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 23/63 (36%), Gaps = 10/63 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  C+    C   CP  AITI +    H          ID   C  CG C+  CP + I
Sbjct: 134 CEIGCLGLGTCAKACPFGAITIGADNLPH----------IDPSLCTGCGTCERVCPKNII 183

Query: 119 VEG 121
              
Sbjct: 184 HLS 186


>gi|223983022|ref|ZP_03633230.1| hypothetical protein HOLDEFILI_00509 [Holdemania filiformis DSM
           12042]
 gi|223965019|gb|EEF69323.1| hypothetical protein HOLDEFILI_00509 [Holdemania filiformis DSM
           12042]
          Length = 264

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 17/87 (19%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            + +CI C LC   CPA  + I+ G              + +  C++CG C+  CP  A+
Sbjct: 16  EKNKCIGCSLCVKTCPAHNLKIQEGKA-----------QVILEDCLFCGQCEAVCPRKAV 64

Query: 119 VEGPNFEFATETRQELYYDKERLLNNG 145
                   +         +KE  LN G
Sbjct: 65  T------VSGYDHAPQEKNKEERLNPG 85


>gi|223041610|ref|ZP_03611809.1| ferredoxin-type protein NapH-like protein [Actinobacillus minor
           202]
 gi|223017585|gb|EEF15997.1| ferredoxin-type protein NapH-like protein [Actinobacillus minor
           202]
          Length = 297

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 23/73 (31%), Gaps = 5/73 (6%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           ++       RC  C  C  +CP          R     +      +    CI CG C + 
Sbjct: 222 IKVNVVDRNRCDRCMDCYNVCP-----EPQVLRLPLHGKPEDSQIVLSQDCISCGRCIDV 276

Query: 113 CPVDAIVEGPNFE 125
           CP      G  FE
Sbjct: 277 CPEKVFAFGSRFE 289


>gi|167745461|ref|ZP_02417588.1| hypothetical protein ANACAC_00152 [Anaerostipes caccae DSM 14662]
 gi|167655182|gb|EDR99311.1| hypothetical protein ANACAC_00152 [Anaerostipes caccae DSM 14662]
          Length = 572

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 25/100 (25%), Positives = 35/100 (35%), Gaps = 6/100 (6%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA---QAITIESGPRCHDGTRRT 93
           PF+K      +     L R  N   +CI C  C  IC       +   SG         +
Sbjct: 122 PFKKEFVHKEWDKTFPLIRDAN---KCIKCMRCVQICDKVQGLNVWDVSGTGARTTVDVS 178

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
              DI +  C  CG C   CPV A+ E  +        ++
Sbjct: 179 RNRDIRVADCSLCGQCITHCPVGALRERDDTSMLFSALED 218


>gi|167377963|ref|XP_001734610.1| ABC transporter [Entamoeba dispar SAW760]
 gi|165903815|gb|EDR29244.1| ABC transporter, putative [Entamoeba dispar SAW760]
          Length = 651

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 29/82 (35%), Gaps = 4/82 (4%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L R     +RC     C   C        +G  C +   +  R  I    CI C LC + 
Sbjct: 11  LDRIAVINDRCKP-GKCRLECKKTCPINRAGGLCIEVLPKDKRAVISETLCIGCALCVKK 69

Query: 113 CPVDAIVEGP---NFEFATETR 131
           CP +AI       N E  T  R
Sbjct: 70  CPFEAIKIINLPKNLEQCTTHR 91


>gi|158521321|ref|YP_001529191.1| hypothetical protein Dole_1308 [Desulfococcus oleovorans Hxd3]
 gi|158510147|gb|ABW67114.1| protein of unknown function DUF362 [Desulfococcus oleovorans Hxd3]
          Length = 396

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 29/83 (34%), Gaps = 14/83 (16%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           +       R    L++    +E C+ C  C  ICP +AI  E                  
Sbjct: 306 RTVIYKYMRRMPVLKK----KETCVMCGDCFNICPNRAIVWEKQQTPVFEK--------- 352

Query: 100 MIKCIYCGLCQEACPVDAIVEGP 122
             KC+ C  C E CP  A+   P
Sbjct: 353 -EKCVSCLCCVECCPQQALEASP 374


>gi|154249960|ref|YP_001410785.1| hypothetical protein Fnod_1281 [Fervidobacterium nodosum Rt17-B1]
 gi|154153896|gb|ABS61128.1| protein of unknown function DUF39 [Fervidobacterium nodosum
           Rt17-B1]
          Length = 455

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 10/73 (13%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
                   E+ +      E+ C+ C  C ++C   A+  +          R VRYD    
Sbjct: 381 KIVDEPMRENYITLKSKIEKTCVNCGACVSLCSTNALYFDEN--------REVRYD--AS 430

Query: 102 KCIYCGLCQEACP 114
           KC YC LC ++CP
Sbjct: 431 KCTYCLLCSDSCP 443


>gi|116061992|dbj|BAF34631.1| reductive dehalogenase homologue [uncultured bacterium]
          Length = 486

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 21/78 (26%), Gaps = 4/78 (5%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE----SGPRCHDGTRRTVRYDI 98
                           G   C  C +C   CP  AI  E                  Y  
Sbjct: 352 IPTDMPLAVTKPIDFGGFNFCKDCGICADTCPLGAIQKEDPTFEPQTPGFPVSGYEGYHT 411

Query: 99  DMIKCIYCGLCQEACPVD 116
           D  KC +C +C   CP +
Sbjct: 412 DYSKCPHCPVCMSVCPFN 429


>gi|52549176|gb|AAU83025.1| heterodisulfide reductase catalytic chain A [uncultured archaeon
           GZfos26D6]
          Length = 287

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 11/64 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  C+ C  CEAICP  A+++E+G              ++ + C  CG C  ACP  AI
Sbjct: 217 NEGICVGCGTCEAICPFDALSLEAG-----------VMHVNEVVCKGCGSCGSACPSGAI 265

Query: 119 VEGP 122
               
Sbjct: 266 TMRH 269


>gi|83590717|ref|YP_430726.1| ferredoxin hydrogenase [Moorella thermoacetica ATCC 39073]
 gi|83573631|gb|ABC20183.1| Ferredoxin hydrogenase [Moorella thermoacetica ATCC 39073]
          Length = 460

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 27/79 (34%), Gaps = 11/79 (13%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + C  C+ C  ICP  AI    G              I+   C+ CG C + C 
Sbjct: 1   MIYIDRDLCTGCRRCAEICPTGAIEGNQGEPQ----------IINREICVNCGQCVQICS 50

Query: 115 VDAIVEGPNFE-FATETRQ 132
             A     + E  A + R+
Sbjct: 51  AYASPYTTSPETMAAKNRE 69


>gi|159115416|ref|XP_001707931.1| Nitroreductase Fd-NR2 [Giardia lamblia ATCC 50803]
 gi|157436039|gb|EDO80257.1| Nitroreductase Fd-NR2 [Giardia lamblia ATCC 50803]
          Length = 264

 Score = 43.9 bits (102), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 11/77 (14%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C  C +C  +CP   + ++   +      R          CI+CG C   CP ++I  
Sbjct: 11  DTCTGCNMCVEVCPTAVLKVDPETKVVAYANR--------DNCIFCGHCGAICPTESISM 62

Query: 121 GPNFEFATETRQELYYD 137
              F    E+ +     
Sbjct: 63  ---FGITPESEENAIKT 76


>gi|322806084|emb|CBZ03651.1| periplasmic [Fe] hydrogenase large subunit [Clostridium botulinum
           H04402 065]
          Length = 577

 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 59  GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQEACPV 115
             ++CI C+ C  +C   Q +   S       T  T  +   I    C +CG C   CP 
Sbjct: 149 DMDKCILCRRCITMCNEVQTVGTLSAIGRGFETVVTPAFSEAIKNTNCTFCGQCVSVCPT 208

Query: 116 DAIVEGPN 123
            A+ E  N
Sbjct: 209 GALTEVNN 216


>gi|297544307|ref|YP_003676609.1| Fe-S cluster domain-containing protein [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296842082|gb|ADH60598.1| Fe-S cluster domain protein [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 435

 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 23/68 (33%), Gaps = 11/68 (16%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
                     ++RC  C  C   CP +AI +  G              I   +CI CG C
Sbjct: 1   MLYFHSVTLDKDRCRGCTNCIKRCPTEAIRVRDGKA-----------RIINERCIDCGEC 49

Query: 110 QEACPVDA 117
              CP  A
Sbjct: 50  IRVCPYHA 57


>gi|294496384|ref|YP_003542877.1| hypothetical protein Mmah_1737 [Methanohalophilus mahii DSM 5219]
 gi|292667383|gb|ADE37232.1| protein of unknown function DUF362 [Methanohalophilus mahii DSM
           5219]
          Length = 369

 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/94 (28%), Positives = 36/94 (38%), Gaps = 20/94 (21%)

Query: 34  INYPFEKG------STSPRFR---GEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84
           I  PF+K          P      G     R     ++C AC  C   CPA+AI +++G 
Sbjct: 276 ITVPFKKPGLSLLRMLPPWLIQKAGHLFTVRPEIDADKCTACGACVRNCPAEAIYMDNG- 334

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                        ID   CI C  C+E CP  A+
Sbjct: 335 ----------HAVIDAGICILCYCCRELCPAAAV 358



 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/36 (41%), Positives = 17/36 (47%)

Query: 89  GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           G   TVR +ID  KC  CG C   CP +AI      
Sbjct: 300 GHLFTVRPEIDADKCTACGACVRNCPAEAIYMDNGH 335


>gi|288559375|ref|YP_003422861.1| CoB--CoM heterodisulfide reductase subunit A HdrA
           [Methanobrevibacter ruminantium M1]
 gi|288542085|gb|ADC45969.1| CoB--CoM heterodisulfide reductase subunit A HdrA
           [Methanobrevibacter ruminantium M1]
          Length = 660

 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 7/64 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C AC++C  +CP  A++IE                I++  C  CG C  ACP  A+
Sbjct: 585 DTTVCGACEVCVELCPFGAVSIEGEGAD-------KHAAINVALCKGCGTCVGACPSGAM 637

Query: 119 VEGP 122
            +  
Sbjct: 638 NQNH 641



 Score = 40.9 bits (94), Expect = 0.069,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 24/72 (33%), Gaps = 7/72 (9%)

Query: 61  ERCIACKLCEAICPAQAITIESGPR-------CHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           + C  C  C+ +CP +                        +   ID   CI CGLC+  C
Sbjct: 250 DDCTGCGQCQEVCPIEIPNYYDEGVGMVKAAYIPFPQAVPLCATIDKNYCIDCGLCETVC 309

Query: 114 PVDAIVEGPNFE 125
             DAI      E
Sbjct: 310 GPDAIDRDMEPE 321


>gi|312200512|ref|YP_004020573.1| ferredoxin [Frankia sp. EuI1c]
 gi|311231848|gb|ADP84703.1| ferredoxin [Frankia sp. EuI1c]
          Length = 117

 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
           C  I     +        + G R+     I   +CI CG C  +CPVDAI    + + A 
Sbjct: 9   CVDIMDQSCVEDCPIDCIYTGARKL---YIHPEECIDCGACARSCPVDAISWDRDLDPAD 65

Query: 129 ET 130
             
Sbjct: 66  PD 67


>gi|167837459|ref|ZP_02464342.1| formate dehydrogenase, alpha subunit [Burkholderia thailandensis
           MSMB43]
          Length = 984

 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 25/85 (29%), Gaps = 10/85 (11%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     +          +        +C+ CG C  
Sbjct: 187 YFSYDPSKCIVCNRCVRACEETQGTFALTIAARGFESRVAASADEAFMDSECVSCGACVA 246

Query: 112 ACPVDAIVE-------GPNFEFATE 129
           ACP   +VE        P  E  T 
Sbjct: 247 ACPTATLVEKSVVRLGQPEHEVVTT 271


>gi|167629043|ref|YP_001679542.1| 4fe-4S ferredoxin, iron-sulfur binding domain protein
           [Heliobacterium modesticaldum Ice1]
 gi|167591783|gb|ABZ83531.1| 4fe-4S ferredoxin, iron-sulfur binding domain protein
           [Heliobacterium modesticaldum Ice1]
          Length = 80

 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 9/65 (13%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           ++   E+ CI C  C  IC   A+      R          + I+   C  CG+C + CP
Sbjct: 12  QFYRIEKHCIRCGFCLDICSWDALDAPGKGRA---------FTIEEDLCPGCGICVDCCP 62

Query: 115 VDAIV 119
           V AI 
Sbjct: 63  VGAIQ 67


>gi|160935618|ref|ZP_02082993.1| hypothetical protein CLOBOL_00508 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441362|gb|EDP19072.1| hypothetical protein CLOBOL_00508 [Clostridium bolteae ATCC
           BAA-613]
          Length = 262

 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 23/56 (41%), Gaps = 11/56 (19%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           CI C LC   C   AI +E+               ID  KC  CG C E CPV  I
Sbjct: 217 CIGCTLCTKQCEFDAIHMENNLAV-----------IDYEKCTNCGKCAEKCPVKVI 261



 Score = 38.2 bits (87), Expect = 0.40,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 28/78 (35%), Gaps = 5/78 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCH-----DGTRRTVRYDIDMIKCIYCGLCQEAC 113
            +E+C+AC  C A CP   I +      H        +      +    CI C LC + C
Sbjct: 168 DKEKCVACGKCVASCPNHLIELVPYKAEHLVQCSSHDKGKDVKAVCAAGCIGCTLCTKQC 227

Query: 114 PVDAIVEGPNFEFATETR 131
             DAI    N       +
Sbjct: 228 EFDAIHMENNLAVIDYEK 245


>gi|150018812|ref|YP_001311066.1| ferredoxin hydrogenase [Clostridium beijerinckii NCIMB 8052]
 gi|149905277|gb|ABR36110.1| Ferredoxin hydrogenase [Clostridium beijerinckii NCIMB 8052]
          Length = 530

 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 1/74 (1%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-IDMIKCIYCGLCQEACPV 115
              +++CI C  C   C  +                  +        C+YCG C  ACP 
Sbjct: 21  QINKKKCIGCTACAFTCAQETKMAILKEVDSGRKTVDTKSGGFGASGCLYCGQCTLACPT 80

Query: 116 DAIVEGPNFEFATE 129
           +AI    + +   E
Sbjct: 81  EAIDVRNDVDLVKE 94



 Score = 37.4 bits (85), Expect = 0.70,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 21/63 (33%), Gaps = 10/63 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E  CI+C  C   CP  AI      R            +   +C+ C LC   C   
Sbjct: 394 QINENLCISCGTCIQNCPVNAIQYNVRGRAE----------VKEEECVGCKLCNNVCRAK 443

Query: 117 AIV 119
           A+ 
Sbjct: 444 AVQ 446


>gi|148643520|ref|YP_001274033.1| energy-converting hydrogenase B, subunit K, EhbK
           [Methanobrevibacter smithii ATCC 35061]
 gi|148552537|gb|ABQ87665.1| energy-converting hydrogenase B, subunit K, EhbK
           [Methanobrevibacter smithii ATCC 35061]
          Length = 412

 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            C+ C+ C  ICP        G +  +     +   I +  C+ CG C E CPV AI  
Sbjct: 104 FCVMCQQCVEICPLD-YVGIEGIKDPNHRELNIEGPIYIENCVGCGTCIEECPVQAISL 161



 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E CI C +C   CP  A+   S       T+    + ++   CI C  C E CP D I
Sbjct: 171 NSEICIKCGVCSQTCPWNAVF-ISEKIPTKRTKEITEFKLNESSCIGCKTCVEICPGDFI 229

Query: 119 VEGPN 123
               N
Sbjct: 230 KFNTN 234



 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM--IKCIYCGLCQEACPVDA 117
            + CI C  C + CP  A+T+++    +       R  I     KC  CG C  +CP + 
Sbjct: 320 FKSCIRCGACASSCPNNALTLDTEFEINKNGTLIKRPRIQYNPSKCDQCGDCVNSCPYNM 379

Query: 118 IVEGPN 123
           +    N
Sbjct: 380 LKTTDN 385



 Score = 42.0 bits (97), Expect = 0.031,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 26/69 (37%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
              E+C     C   CP QAI + +        +     D     CI CG C  +CP +A
Sbjct: 278 CDAEKCDHIGACAMKCPTQAIHVVTKTGMSVPEQIKSDEDPLFKSCIRCGACASSCPNNA 337

Query: 118 IVEGPNFEF 126
           +     FE 
Sbjct: 338 LTLDTEFEI 346



 Score = 38.9 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 4/87 (4%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKL---CEAICPAQAITIESGPRCHDGTRRTVRY 96
           K          +A++  PN    C  C     C  ICP  A+ ++      +G  +  R 
Sbjct: 11  KCEACEGICPSNAIKVQPNNIIHCDTCGDSPKCAEICPNDALKVDF-LTLEEGGAQQARL 69

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPN 123
             + +KC  CG C E CP + I    N
Sbjct: 70  IFNGLKCDQCGKCVETCPQNTITLTNN 96



 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 9/61 (14%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E C+ C  C   CP QAI++                +I+   CI CG+C + CP +A+  
Sbjct: 142 ENCVGCGTCIEECPVQAISLNELGEP---------IEINSEICIKCGVCSQTCPWNAVFI 192

Query: 121 G 121
            
Sbjct: 193 S 193



 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 1/76 (1%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103
              F   +         + C AC LCE +C   AI++                  D  KC
Sbjct: 225 PGDFIKFNTNNLTITLPKMCAACGLCEKMCSVNAISLNVKLHDATPCTEEGVV-CDAEKC 283

Query: 104 IYCGLCQEACPVDAIV 119
            + G C   CP  AI 
Sbjct: 284 DHIGACAMKCPTQAIH 299



 Score = 35.1 bits (79), Expect = 3.5,   Method: Composition-based stats.
 Identities = 14/62 (22%), Positives = 18/62 (29%), Gaps = 11/62 (17%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
                +C  C  C   CP   +     P+                 C  CG C E CP  
Sbjct: 359 QYNPSKCDQCGDCVNSCPYNMLKTTDNPKLPI-----------AGFCTLCGQCIETCPEK 407

Query: 117 AI 118
           A+
Sbjct: 408 AL 409


>gi|325845872|ref|ZP_08169070.1| ferredoxin hydrogenase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
 gi|325481778|gb|EGC84810.1| ferredoxin hydrogenase [Anaerococcus hydrogenalis ACS-025-V-Sch4]
          Length = 577

 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 59  GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQEACPV 115
              +CI C+ CE +C   Q +   +       T     ++  +    C +CG C   CP 
Sbjct: 147 DPNKCILCRRCETMCNTVQTVGALAEVGRGFNTHVGSTFNRSMFETTCTFCGQCLSVCPT 206

Query: 116 DAIVEGPN 123
            A+ E  N
Sbjct: 207 GALTEKSN 214


>gi|323349362|gb|EGA83587.1| Rli1p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 583

 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP---N 123
           K C   C      +++G  C + T  +    I  I CI CG+C + CP DAI       N
Sbjct: 19  KKCRQECKRSCPVVKTGKLCIEVTPTSKIAFISEILCIGCGICVKKCPFDAIQIINLPTN 78

Query: 124 FEFATETR 131
            E     R
Sbjct: 79  LEAHVTHR 86


>gi|319940502|ref|ZP_08014847.1| formate dehydrogenase [Sutterella wadsworthensis 3_1_45B]
 gi|319806128|gb|EFW02877.1| formate dehydrogenase [Sutterella wadsworthensis 3_1_45B]
          Length = 906

 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 21/65 (32%), Gaps = 3/65 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIE--SGPRCHDGTRRTVRYDIDMI-KCIYCGLCQEACPV 115
               CI C+ C   C   A      +G R    +      +      C  CG C  ACP 
Sbjct: 146 NPALCIRCQRCVGACNNAAGNHTLITGRRGVRTSILAPFAEDWKSTNCESCGNCAGACPT 205

Query: 116 DAIVE 120
            AI  
Sbjct: 206 GAITM 210


>gi|317476662|ref|ZP_07935906.1| 4Fe-4S binding domain-containing protein [Bacteroides eggerthii
           1_2_48FAA]
 gi|316907125|gb|EFV28835.1| 4Fe-4S binding domain-containing protein [Bacteroides eggerthii
           1_2_48FAA]
          Length = 502

 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 8/80 (10%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIA------CKLCEAICPAQAITIESGPRCHDGTRRTV 94
              +   +    +      +E CI       C  C   CP  AI + +    +  +R+  
Sbjct: 407 RPITKADKSAIQIGHAVWIKENCICITDDVECGNCARHCPVGAIQMVASDPENPESRKIP 466

Query: 95  RYDIDMIKCIYCGLCQEACP 114
              ++  +CI CG C+  CP
Sbjct: 467 V--VNTERCIGCGACENLCP 484



 Score = 40.9 bits (94), Expect = 0.060,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 27/84 (32%), Gaps = 5/84 (5%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100
             +S   R       Y  G  R   C  C  +CPA AI   +             +  + 
Sbjct: 370 RPSSDLTRLMQPEMSYERGYCR-PECTKCAEVCPAGAIRPITKADKSAIQIGHAVWIKEN 428

Query: 101 IKCI----YCGLCQEACPVDAIVE 120
             CI     CG C   CPV AI  
Sbjct: 429 CICITDDVECGNCARHCPVGAIQM 452



 Score = 37.0 bits (84), Expect = 0.89,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 13/78 (16%)

Query: 47  FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
           F  +++L +      +C  C LC   C A  I  ++             ++ID  +C+ C
Sbjct: 210 FLSKYSLFKPVIDTTKCNGCGLCARNCKASCINSKA-------------HEIDYSRCVAC 256

Query: 107 GLCQEACPVDAIVEGPNF 124
             C + C   AI      
Sbjct: 257 MDCLDKCKQGAITYTRRH 274



 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 34/112 (30%), Gaps = 3/112 (2%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
            +K                 N  + C AC+LC ++CP Q +   S          +    
Sbjct: 329 EKKIPERATAITPPGSMSARNFAQHCTACQLCVSVCPNQVLRPSSDLTRLMQPEMSYERG 388

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWE 149
               +C     C E CP  AI      + +        + KE  +   D  E
Sbjct: 389 YCRPECTK---CAEVCPAGAIRPITKADKSAIQIGHAVWIKENCICITDDVE 437


>gi|312127727|ref|YP_003992601.1| aldo/keto reductase [Caldicellulosiruptor hydrothermalis 108]
 gi|311777746|gb|ADQ07232.1| aldo/keto reductase [Caldicellulosiruptor hydrothermalis 108]
          Length = 315

 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 11/115 (9%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           F+  + F+F   ++ +  + ++  F+    I    EK     +   E+   +  + E  C
Sbjct: 209 FKRALEFIFEFPYLHSVAIGMQSIFEVDYNIRCFEEKKVYLEKELLENIKTKKLHVESWC 268

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             C  C   C   A++++ G              +D  KC+ CG C   C   A+
Sbjct: 269 EGCGECVLHCHQNALSVKDGKVF-----------VDYSKCLCCGYCSSYCKFFAL 312


>gi|302342419|ref|YP_003806948.1| methyl-viologen-reducing hydrogenase subunit delta [Desulfarculus
           baarsii DSM 2075]
 gi|301639032|gb|ADK84354.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfarculus
           baarsii DSM 2075]
          Length = 745

 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 22/63 (34%), Gaps = 10/63 (15%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            +RC  CK C   CP  AI  +                 +  +C  CG+C  ACP   I 
Sbjct: 536 MQRCTQCKRCTEECPFGAINEDEKANPLP----------NPTRCRRCGVCMGACPERIIS 585

Query: 120 EGP 122
              
Sbjct: 586 FKN 588



 Score = 35.1 bits (79), Expect = 3.1,   Method: Composition-based stats.
 Identities = 22/99 (22%), Positives = 30/99 (30%), Gaps = 4/99 (4%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            L+Y       I +P+E   T     G              I   +  A+   QAI    
Sbjct: 461 TLKYAMPDSHFICFPYESRRTGIYPVGTVRRPMRLTQA---IDDGVGAALKAIQAIKAAE 517

Query: 83  GPRCHDGTRRTVRY-DIDMIKCIYCGLCQEACPVDAIVE 120
                        + +  M +C  C  C E CP  AI E
Sbjct: 518 AGCAVHPRSGDESFPEFFMQRCTQCKRCTEECPFGAINE 556


>gi|294494960|ref|YP_003541453.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta domain protein
           [Methanohalophilus mahii DSM 5219]
 gi|292665959|gb|ADE35808.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Methanohalophilus mahii DSM 5219]
          Length = 638

 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 19/75 (25%), Positives = 24/75 (32%), Gaps = 11/75 (14%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                 G          E +C  C  C  +C   AI+IE G              I+   
Sbjct: 498 VRDHDIGIMGQLMPVIDETKCTGCGRCTELCKFNAISIEGGKAV-----------INRDL 546

Query: 103 CIYCGLCQEACPVDA 117
           C  CG C   CP +A
Sbjct: 547 CGNCGWCVRGCPHEA 561



 Score = 34.7 bits (78), Expect = 4.1,   Method: Composition-based stats.
 Identities = 12/41 (29%), Positives = 15/41 (36%)

Query: 78  ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +         G    +   ID  KC  CG C E C  +AI
Sbjct: 493 NSCVRVRDHDIGIMGQLMPVIDETKCTGCGRCTELCKFNAI 533


>gi|293401894|ref|ZP_06646034.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291304552|gb|EFE45801.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase
           [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 1174

 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 29/95 (30%), Gaps = 20/95 (21%)

Query: 51  HALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY 96
            A++      E CI C +C  +CP                A       +        ++Y
Sbjct: 684 IAVQVPTWHPENCIQCGICSFVCPHATIRPFLLTDEEVANAPMEFKTIQAMGKGVENLKY 743

Query: 97  DID--MIKCIYCGLCQEACPV----DAIVEGPNFE 125
            I      C+ CGLC   CP      A+      E
Sbjct: 744 RIQVTPANCVGCGLCAVECPGKGGNKALEMVDINE 778


>gi|289578084|ref|YP_003476711.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter italicus Ab9]
 gi|297544357|ref|YP_003676659.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
 gi|289527797|gb|ADD02149.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter italicus Ab9]
 gi|296842132|gb|ADH60648.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacter mathranii subsp. mathranii str. A3]
          Length = 56

 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 11/64 (17%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + CI+C  C A CP  AI    G            Y+ID   CI CG C+  CP
Sbjct: 1   MAHYITDECISCGACAAECPVDAIHEGDGK-----------YEIDPDTCIDCGACEAVCP 49

Query: 115 VDAI 118
             A+
Sbjct: 50  TGAV 53


>gi|194332908|ref|YP_002014768.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Prosthecochloris aestuarii DSM 271]
 gi|194310726|gb|ACF45121.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Prosthecochloris aestuarii DSM 271]
          Length = 515

 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/85 (24%), Positives = 28/85 (32%), Gaps = 16/85 (18%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           EKG      R    LR     +  C+       ICP +A+            R       
Sbjct: 41  EKGKFPDTRRYFTVLRCNHCEDPPCV------NICPVEALQKREDGIVDFDKR------- 87

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPN 123
              +CI C  C +ACP  A+   P 
Sbjct: 88  ---RCIGCKACGQACPYGALYIDPE 109



 Score = 40.9 bits (94), Expect = 0.058,   Method: Composition-based stats.
 Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 17/97 (17%)

Query: 56  YPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTRRTVRYDIDMIKCIYCGL-- 108
           +     +CI C  C   C ++                 G     R    +++C +C    
Sbjct: 5   FVIDGRKCIGCHACTVGCKSENQVPLGVNRTWVKYVEKGKFPDTRRYFTVLRCNHCEDPP 64

Query: 109 CQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNG 145
           C   CPV+A+            R++   D ++    G
Sbjct: 65  CVNICPVEALQ----------KREDGIVDFDKRRCIG 91



 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 24/70 (34%), Gaps = 4/70 (5%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            + RCI CK C   CP  A+ I+                   +K      C   CP  AI
Sbjct: 85  DKRRCIGCKACGQACPYGALYIDPESHTSAKCNYCAHRKEVGMK----PACVVICPQQAI 140

Query: 119 VEGPNFEFAT 128
           V G   +  +
Sbjct: 141 VSGDLDDPHS 150


>gi|183233096|ref|XP_001913806.1| RNAseL inhibitor-like protein [Entamoeba histolytica HM-1:IMSS]
 gi|169801731|gb|EDS89415.1| RNAseL inhibitor-like protein, putative [Entamoeba histolytica
           HM-1:IMSS]
          Length = 651

 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 29/82 (35%), Gaps = 4/82 (4%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L R     +RC     C   C        +G  C +   +  R  I    CI C LC + 
Sbjct: 11  LDRIAVINDRCKP-GKCRLECKKTCPINRAGGLCIEVLPKDKRAVISETLCIGCALCVKK 69

Query: 113 CPVDAIVEGP---NFEFATETR 131
           CP +AI       N E  T  R
Sbjct: 70  CPFEAIKIINLPKNLEQCTTHR 91


>gi|154497070|ref|ZP_02035766.1| hypothetical protein BACCAP_01363 [Bacteroides capillosus ATCC
           29799]
 gi|150273469|gb|EDN00597.1| hypothetical protein BACCAP_01363 [Bacteroides capillosus ATCC
           29799]
          Length = 266

 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 5/69 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGP-----RCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
             + C+ C LCE +CP   I +         RC +  R     D+    CI C  C + C
Sbjct: 167 DRDACVGCGLCEKVCPNHVIGVFPKKQKVFDRCSNYNRGKAVMDVCKAGCIGCTKCSKVC 226

Query: 114 PVDAIVEGP 122
           P  AI    
Sbjct: 227 PEGAITMDN 235



 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 11/86 (12%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
           +P ++                   +  CI C  C  +CP  AIT+++             
Sbjct: 189 FPKKQKVFDRCSNYNRGKAVMDVCKAGCIGCTKCSKVCPEGAITMDNCLA---------- 238

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEG 121
             ++ +KC  CG C E+CP   +   
Sbjct: 239 -QVNPMKCTGCGTCVESCPTGCMSFT 263


>gi|19113524|ref|NP_596732.1| iron-sulfur protein [Schizosaccharomyces pombe 972h-]
 gi|74676038|sp|O60102|YOX6_SCHPO RecName: Full=Uncharacterized ABC transporter ATP-binding protein
           C14F5.06
 gi|3184109|emb|CAA19324.1| iron-sulfur protein [Schizosaccharomyces pombe]
          Length = 593

 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 20/56 (35%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           K C   C      + +G  C +         I    CI CG+C + CP  AI    
Sbjct: 19  KKCRQECRRSCPVVRTGKLCIEVNPTDRIAFISETLCIGCGICVKKCPFGAINIIN 74


>gi|45358921|ref|NP_988478.1| ferredoxin [Methanococcus maripaludis S2]
 gi|45047787|emb|CAF30914.1| ferredoxin [Methanococcus maripaludis S2]
          Length = 132

 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 10/62 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +E+CI C  C   CP  A++++   +            +D  +CI C  C + CPV+AI
Sbjct: 78  DDEKCIDCGACVVHCPVGALSVDEEFKIL----------LDEDECIGCKNCAKICPVNAI 127

Query: 119 VE 120
             
Sbjct: 128 KI 129



 Score = 33.9 bits (76), Expect = 7.6,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 12/24 (50%)

Query: 101 IKCIYCGLCQEACPVDAIVEGPNF 124
            KCI CG C   CPV A+     F
Sbjct: 80  EKCIDCGACVVHCPVGALSVDEEF 103


>gi|85682156|sp|P80491|FRHG_METBF RecName: Full=Coenzyme F420 hydrogenase subunit gamma; AltName:
           Full=8-hydroxy-5-deazaflavin-reducing hydrogenase
           subunit gamma; Short=FRH
 gi|2463281|emb|CAA74092.1| F420-reducing hydrogenase isoenzyme II gamma subunit
           [Methanosarcina barkeri]
          Length = 259

 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 28/75 (37%), Gaps = 13/75 (17%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L      +  C+ C  C A CP  AIT+E G               +   CI CG C  A
Sbjct: 179 LMYDVINQGLCMGCGTCAASCPVHAITLEFGK-----------PQGERDLCIKCGSCYGA 227

Query: 113 CP--VDAIVEGPNFE 125
           CP     +   P FE
Sbjct: 228 CPRSFFNLDVIPEFE 242



 Score = 37.8 bits (86), Expect = 0.47,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)

Query: 80  IESGPRCHDGTRRTVRYD-IDMIKCIYCGLCQEACPVDAIVE 120
           ++   R   G    + YD I+   C+ CG C  +CPV AI  
Sbjct: 165 MDLAKRGTSGCFCDLMYDVINQGLCMGCGTCAASCPVHAITL 206


>gi|323705128|ref|ZP_08116704.1| Glutamate synthase (NADPH) [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323535554|gb|EGB25329.1| Glutamate synthase (NADPH) [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 501

 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/106 (16%), Positives = 37/106 (34%), Gaps = 14/106 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++CI CK+C   C  +  + +                    KC+ C  C   CP  A+
Sbjct: 15  DYDKCINCKVCMRQCANEVHSYDEDLGKMVADDY---------KCVNCQRCVVMCPTHAL 65

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWES--EIVRNIVTDSPY 162
               +       R+   +  + + +   + E+   ++  +  D PY
Sbjct: 66  TIVKH---PQVFRENANWTYDAIRDIYRQAETGGVLLSAMGNDRPY 108


>gi|302339910|ref|YP_003805116.1| methyl-accepting chemotaxis sensory transducer [Spirochaeta
           smaragdinae DSM 11293]
 gi|301637095|gb|ADK82522.1| methyl-accepting chemotaxis sensory transducer [Spirochaeta
           smaragdinae DSM 11293]
          Length = 702

 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 10/69 (14%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E +C+ C  C A CP +     SG              I    CI CG C EAC  +
Sbjct: 10  QIDESKCVNCHACIAACPVKYCIDGSG----------STVTIHHDLCIGCGKCIEACTHN 59

Query: 117 AIVEGPNFE 125
           A     + E
Sbjct: 60  ARSVVDDTE 68


>gi|270308729|ref|YP_003330787.1| reductive dehalogenase [Dehalococcoides sp. VS]
 gi|270154621|gb|ACZ62459.1| reductive dehalogenase [Dehalococcoides sp. VS]
          Length = 532

 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 12/69 (17%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC----------IY 105
             N  E C  CKLC  +CP QAI+ +  P+     +R  R++ ++ KC          + 
Sbjct: 390 DFNLAEFCSRCKLCAQVCPTQAISYDDKPKFEIYGQR--RFNTNLAKCRDGWNLGAGPMG 447

Query: 106 CGLCQEACP 114
           C  C   CP
Sbjct: 448 CRACISVCP 456



 Score = 35.5 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 2/31 (6%)

Query: 103 CIYCGLCQEACPVDAIVEG--PNFEFATETR 131
           C  C LC + CP  AI     P FE   + R
Sbjct: 397 CSRCKLCAQVCPTQAISYDDKPKFEIYGQRR 427


>gi|153940304|ref|YP_001391107.1| [Fe] hydrogenase [Clostridium botulinum F str. Langeland]
 gi|152936200|gb|ABS41698.1| iron hydrogenase 1 [Clostridium botulinum F str. Langeland]
 gi|295319153|gb|ADF99530.1| iron hydrogenase 1 [Clostridium botulinum F str. 230613]
          Length = 577

 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 3/68 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIE---SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
             ++CI C+ C  +C            G              I    C +CG C   CP 
Sbjct: 149 DMDKCILCRRCITMCNEVQTVGTLSAIGRGFETVVAPAFSEAIKNTNCTFCGQCVSVCPT 208

Query: 116 DAIVEGPN 123
            A+ E  N
Sbjct: 209 GALTEVNN 216


>gi|20092251|ref|NP_618326.1| sulfite reductase, beta subunit [Methanosarcina acetivorans C2A]
 gi|19917487|gb|AAM06806.1| sulfite reductase, beta subunit [Methanosarcina acetivorans C2A]
          Length = 288

 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 29/91 (31%), Positives = 34/91 (37%), Gaps = 12/91 (13%)

Query: 28  FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH 87
           FK   T   P           G     +    EE C+ CKLCE  C   AIT+       
Sbjct: 137 FKVAVT-GCPAACVRPQENDFGVMGTVKPEILEENCVGCKLCEKACKVGAITVLDDK--- 192

Query: 88  DGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                     ID+ KCI CG C  AC  DA+
Sbjct: 193 --------IRIDLEKCILCGACIAACRKDAL 215


>gi|56478444|ref|YP_160033.1| hypothetical protein ebA5294 [Aromatoleum aromaticum EbN1]
 gi|56314487|emb|CAI09132.1| subunit of oxidoreductase of unknown function, conserved in
           Azoarcus-type benzoate degradation gene clusters
           [Aromatoleum aromaticum EbN1]
          Length = 853

 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 6/71 (8%)

Query: 55  RYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDIDMIK----CIYCGL 108
            +      CI C+ C   C        +E         +RT    I        C +C  
Sbjct: 192 FFDRDYNLCIDCRRCLVACNDVRGVGCLEVKEVETPQGKRTYVGTIAPTLIESGCTFCQA 251

Query: 109 CQEACPVDAIV 119
           C   CP  A++
Sbjct: 252 CVTVCPTGALM 262


>gi|66828195|ref|XP_647452.1| dihydropyrimidine dehydrogenase [Dictyostelium discoideum AX4]
 gi|74859332|sp|Q55FT1|DPYD_DICDI RecName: Full=Dihydropyrimidine dehydrogenase [NADP+];
            Short=DHPDHase; Short=DPD; AltName: Full=Dihydrothymine
            dehydrogenase; AltName: Full=Dihydrouracil dehydrogenase
 gi|60475501|gb|EAL73436.1| dihydropyrimidine dehydrogenase [Dictyostelium discoideum AX4]
          Length = 1009

 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 19/75 (25%), Gaps = 8/75 (10%)

Query: 59   GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117
             E++CI C  C   C                        +    C  C LC   CPV   
Sbjct: 937  DEDKCINCGKCYMTCN-------DSGYQAIKFDGKTHIPLVTDLCTGCDLCLSVCPVPDC 989

Query: 118  IVEGPNFEFATETRQ 132
            I   P        R 
Sbjct: 990  ITMVPRETIYVPDRG 1004


>gi|312878995|ref|ZP_07738795.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
           [Aminomonas paucivorans DSM 12260]
 gi|310782286|gb|EFQ22684.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
           [Aminomonas paucivorans DSM 12260]
          Length = 585

 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 3/67 (4%)

Query: 59  GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115
             ++C+ C+ CE +C   Q + + SG      +     ++  + +  C +CG C   CP 
Sbjct: 147 DMDKCVMCRRCETMCNEVQTVGVLSGVNRGFTSVVAPAFEKPLEESVCTFCGQCAAVCPT 206

Query: 116 DAIVEGP 122
            A+VE  
Sbjct: 207 GALVERD 213


>gi|301168533|emb|CBW28123.1| putative oxidoreductase [Bacteriovorax marinus SJ]
          Length = 143

 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +  C  C++C A CP  +I + +GP   +   +    +ID+ +CI C  C + CP + I
Sbjct: 35  HQSGCTGCEVCIAGCPVDSIELVAGPNPDNPEFKQTV-EIDLARCIGCQNCSQDCPWETI 93

Query: 119 VEGP 122
               
Sbjct: 94  TMYN 97


>gi|300087813|ref|YP_003758335.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
            [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527546|gb|ADJ26014.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
            [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 1119

 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 61   ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E C  C  C   CP  AI++    +  +  +     + D ++C  CG+C   CP   I
Sbjct: 1045 ENCDGCAYCVDPCPYDAISLIEYRKNGETKK---TVEADPMRCHGCGVCMATCPKQGI 1099


>gi|291562108|emb|CBL40924.1| Uncharacterized Fe-S center protein [butyrate-producing bacterium
           SS3/4]
          Length = 373

 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 12/62 (19%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C  C  C   C + AIT  +               ID  KC  CG C  AC  DAI   P
Sbjct: 197 CRGCGRCAKECGSDAITYVNKKAV-----------IDYDKCKGCGRCIGACSFDAIYN-P 244

Query: 123 NF 124
           N+
Sbjct: 245 NY 246


>gi|255505769|ref|ZP_05348062.3| iron-sulfur cluster-binding protein [Bryantella formatexigens DSM
           14469]
 gi|255265964|gb|EET59169.1| iron-sulfur cluster-binding protein [Bryantella formatexigens DSM
           14469]
          Length = 325

 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 15/69 (21%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +      E++C+ C+ C  +C                         D  +CI CG C++A
Sbjct: 221 IYHLEVDEKKCVGCQKCAHVCKMD---------------VDPVKHPDSAECIRCGECRDA 265

Query: 113 CPVDAIVEG 121
           CPV AI  G
Sbjct: 266 CPVQAIHLG 274


>gi|224370292|ref|YP_002604456.1| putative NADPH-dependent glutamate synthase [Desulfobacterium
           autotrophicum HRM2]
 gi|223693009|gb|ACN16292.1| putative NADPH-dependent glutamate synthase [Desulfobacterium
           autotrophicum HRM2]
          Length = 690

 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 10/62 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            +    CI    C   C   A+++                 +D  KC+ CG CQ+ACP D
Sbjct: 131 RDCHVGCIGLGDCIKACKFGALSMGPKGHP----------IVDDDKCVGCGACQKACPKD 180

Query: 117 AI 118
            I
Sbjct: 181 II 182


>gi|212696951|ref|ZP_03305079.1| hypothetical protein ANHYDRO_01514 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676039|gb|EEB35646.1| hypothetical protein ANHYDRO_01514 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 577

 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 59  GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQEACPV 115
              +CI C+ CE +C   Q +   +       T     ++  +    C +CG C   CP 
Sbjct: 147 DPNKCILCRRCETMCNTVQTVGALAEVGRGFNTHVGSTFNRSMFETTCTFCGQCLSVCPT 206

Query: 116 DAIVEGPN 123
            A+ E  N
Sbjct: 207 GALTEKSN 214


>gi|167756604|ref|ZP_02428731.1| hypothetical protein CLORAM_02141 [Clostridium ramosum DSM 1402]
 gi|167702779|gb|EDS17358.1| hypothetical protein CLORAM_02141 [Clostridium ramosum DSM 1402]
          Length = 251

 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 32/100 (32%), Gaps = 12/100 (12%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
             +YF + K T    F  G  +  F       +  + E+ CI C  C   CP + I++  
Sbjct: 145 AGKYFLETKPTFIGRFNSGIVNRLFYPMFVRAKGFHVEDTCIGCGQCIHACPLKNISLVD 204

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                          I    C  C  C   CP  AI    
Sbjct: 205 SRP------------IWDEHCTQCMACISICPKAAIEYKN 232


>gi|78187416|ref|YP_375459.1| sulfite reductase, beta subunit [Chlorobium luteolum DSM 273]
 gi|78167318|gb|ABB24416.1| sulfite reductase, beta subunit [Chlorobium luteolum DSM 273]
          Length = 319

 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 4/69 (5%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
               G   +        +C  C  C + CP  AI+        D       Y +D  +CI
Sbjct: 150 ENDVGIRGVVEPEWIGPQCNDCGKCLSYCPVDAISRSGRAARDD----QFTYSVDEKRCI 205

Query: 105 YCGLCQEAC 113
            CGLC   C
Sbjct: 206 GCGLCASKC 214


>gi|24216977|ref|NP_714458.1| metal (Ni/Fe) hydrogenase small subunit [Leptospira interrogans
           serovar Lai str. 56601]
 gi|24198376|gb|AAN51476.1| metal (Ni/Fe) hydrogenase small subunit [Leptospira interrogans
           serovar Lai str. 56601]
          Length = 273

 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 28/114 (24%), Positives = 42/114 (36%), Gaps = 15/114 (13%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
             F++  T+NY       +P  RG        N    C+ CK CE +CP  ++ I S  +
Sbjct: 9   NIFRSAKTMNYKKV-SPLNPNARGIPIPVLSSNE--SCLTCKSCEQVCPTHSLKIISKDK 65

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL--YYD 137
                        D   C+ CG C E C    I++       +  R+ L   Y 
Sbjct: 66  MSF----------DYGACLQCGKCSEVCSNGKIIDSGFVHVYSTDRETLQVVYT 109


>gi|219669794|ref|YP_002460229.1| 4Fe-4S ferredoxin iron-sulphur binding, conserved site
           [Desulfitobacterium hafniense DCB-2]
 gi|219540054|gb|ACL21793.1| 4Fe-4S ferredoxin, iron-sulphur binding, conserved site
           [Desulfitobacterium hafniense DCB-2]
          Length = 310

 Score = 43.5 bits (101), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 29/83 (34%), Gaps = 7/83 (8%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-- 96
           E+          + LR       +CI C  C A C A A     G        +   +  
Sbjct: 128 ERRRLPIEDSNPYILR----DLNKCILCGKCVATCEAVAERSVIGFVNRGFHAKVATFMD 183

Query: 97  -DIDMIKCIYCGLCQEACPVDAI 118
            D+    C+YC  C   CPV A+
Sbjct: 184 TDLKDSTCVYCNRCVAVCPVGAL 206


>gi|301060428|ref|ZP_07201287.1| glycyl-radical enzyme activating family protein [delta
           proteobacterium NaphS2]
 gi|300445482|gb|EFK09388.1| glycyl-radical enzyme activating family protein [delta
           proteobacterium NaphS2]
          Length = 301

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 28/83 (33%), Gaps = 22/83 (26%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRR----------------------TVR 95
           +  ++C+ C  C ++CP +AI      +  +                             
Sbjct: 2   HDTDKCVRCGTCVSVCPEEAIAPPGKRQVENNHSASDSACCLPDGGATETYTQDISDVRP 61

Query: 96  YDIDMIKCIYCGLCQEACPVDAI 118
             ID  KC  C  C E CP DAI
Sbjct: 62  PQIDRSKCTLCMKCVEVCPQDAI 84


>gi|319760752|ref|YP_004124689.1| 4fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alicycliphilus denitrificans BC]
 gi|330822672|ref|YP_004385975.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alicycliphilus denitrificans K601]
 gi|317115313|gb|ADU97801.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alicycliphilus denitrificans BC]
 gi|329308044|gb|AEB82459.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Alicycliphilus denitrificans K601]
          Length = 94

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +RC  C  C A CP   ++++       G +R+V +D     C  C LC   CP DAI
Sbjct: 16  DPDRCTGCGWCVAACPPHVLSLQVQGMERFGAKRSVLHD--APGCTGCALCALRCPFDAI 73

Query: 119 VE 120
             
Sbjct: 74  RM 75


>gi|299146147|ref|ZP_07039215.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           sp. 3_1_23]
 gi|298516638|gb|EFI40519.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides
           sp. 3_1_23]
          Length = 288

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 9/65 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C+ C  C A C   AI +                ++D  KC  CG C +ACP   I
Sbjct: 138 CSYGCLGCGDCVAACQFDAIHMNPETGLP---------EVDEAKCTACGACVKACPKAII 188

Query: 119 VEGPN 123
              P 
Sbjct: 189 EIRPQ 193



 Score = 40.5 bits (93), Expect = 0.072,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 8/76 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCH--------DGTRRTVRYDIDMIKCIYCGLCQ 110
            E +C AC  C   CP   I I    +          +  +  V      + CI CG C 
Sbjct: 169 DEAKCTACGACVKACPKAIIEIRPQGKKSRRVYISCVNKDKGAVARKACTVSCIGCGKCV 228

Query: 111 EACPVDAIVEGPNFEF 126
           + CP +AI    N  +
Sbjct: 229 KTCPFEAITLENNLAY 244



 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 11/62 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI C  C   CP +AIT+E+               ID  KC  C  C E CP + I
Sbjct: 217 CTVSCIGCGKCVKTCPFEAITLENNLAY-----------IDPHKCKSCRKCVEVCPQNTI 265

Query: 119 VE 120
           +E
Sbjct: 266 IE 267


>gi|257076761|ref|ZP_05571122.1| indolepyruvate oxidoreductase, alpha subunit [Ferroplasma
           acidarmanus fer1]
          Length = 628

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 27/72 (37%), Gaps = 13/72 (18%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
             H +  Y   +++C  C  C       AI+IE G              ID   C  CG+
Sbjct: 564 KTHRVITYTVNQDKCGKCMNCVENFACPAISIEGG-----------NIKIDSNICDGCGV 612

Query: 109 CQE--ACPVDAI 118
           C E   CP  AI
Sbjct: 613 CAEPYVCPFKAI 624


>gi|257095916|ref|YP_003169557.1| RnfABCDGE type electron transport complex subunit B [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257048440|gb|ACV37628.1| electron transport complex, RnfABCDGE type, B subunit [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 181

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 10/60 (16%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C  C  +CP  AI   +             +++    C  CG C + CP +A++  P
Sbjct: 110 CIGCCRCSKVCPTDAIVGAAKQ----------IHNVIREACTGCGNCIDRCPTEALLLQP 159


>gi|304317042|ref|YP_003852187.1| nitrite and sulphite reductase 4Fe-4S region [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302778544|gb|ADL69103.1| nitrite and sulphite reductase 4Fe-4S region [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 290

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/88 (28%), Positives = 30/88 (34%), Gaps = 11/88 (12%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P           G          E+ C  C LC  +C  +AITI+      D       
Sbjct: 141 CPNNCTKPQFNDIGFQGQVEPELSEDLCTGCGLCADVCDVKAITIKDNLARRD------- 193

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                 KCIYCG C   CP+DA     N
Sbjct: 194 ----DDKCIYCGSCIRVCPMDAWKRKRN 217



 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 1/50 (2%)

Query: 75  AQAITIESGPRC-HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +      + P+    G +  V  ++    C  CGLC + C V AI    N
Sbjct: 139 SGCPNNCTKPQFNDIGFQGQVEPELSEDLCTGCGLCADVCDVKAITIKDN 188


>gi|258516688|ref|YP_003192910.1| methyl-viologen-reducing hydrogenase delta subunit
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257780393|gb|ACV64287.1| methyl-viologen-reducing hydrogenase delta subunit
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 736

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 20/64 (31%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              RC  CK C   CP  AI  +                 +  +C  CG C  ACP   I
Sbjct: 525 NMNRCTQCKRCTEECPFGAINEDEKGNPLP----------NPTRCRRCGTCMGACPERII 574

Query: 119 VEGP 122
               
Sbjct: 575 SFKN 578



 Score = 33.9 bits (76), Expect = 7.5,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 13/28 (46%)

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVE 120
               + +M +C  C  C E CP  AI E
Sbjct: 519 MSYPEFNMNRCTQCKRCTEECPFGAINE 546


>gi|193083887|gb|ACF09566.1| 4Fe-4S ferredoxin iron-sulfur binding protein [uncultured marine
           group II euryarchaeote KM3-72-G3]
          Length = 490

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/91 (28%), Positives = 30/91 (32%), Gaps = 16/91 (17%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
           T     EKG+     R     R           C  CE      A      P     TR 
Sbjct: 56  THVKYIEKGTYPDVTREFSVHR-----------CNHCE-----DAPCTTICPTTALFTRE 99

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
               D D  +CI C  C +ACP DA+   PN
Sbjct: 100 DGIVDFDDDRCIGCKSCMQACPYDALYIDPN 130



 Score = 42.0 bits (97), Expect = 0.024,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 4/64 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++RCI CK C   CP  A+ I+                       Y   C   CPV+AI
Sbjct: 106 DDDRCIGCKSCMQACPYDALYIDPNKGTAAKCNYCAHRIEHS----YEPSCVVVCPVEAI 161

Query: 119 VEGP 122
           + G 
Sbjct: 162 ISGD 165



 Score = 41.6 bits (96), Expect = 0.038,   Method: Composition-based stats.
 Identities = 20/108 (18%), Positives = 32/108 (29%), Gaps = 17/108 (15%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTRRTV 94
           KG   P          +     +CI C  C   C ++                 GT   V
Sbjct: 10  KGPVRPHRGRTMVNYGFVIDNRKCIGCHACTVACKSEHDVPIGVNRTHVKYIEKGTYPDV 69

Query: 95  RYDIDMIKCIYC--GLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140
             +  + +C +C    C   CP  A+           TR++   D + 
Sbjct: 70  TREFSVHRCNHCEDAPCTTICPTTAL----------FTREDGIVDFDD 107


>gi|167747433|ref|ZP_02419560.1| hypothetical protein ANACAC_02153 [Anaerostipes caccae DSM 14662]
 gi|317471162|ref|ZP_07930533.1| 4Fe-4S binding domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
 gi|167652795|gb|EDR96924.1| hypothetical protein ANACAC_02153 [Anaerostipes caccae DSM 14662]
 gi|316901377|gb|EFV23320.1| 4Fe-4S binding domain-containing protein [Anaerostipes sp.
           3_2_56FAA]
          Length = 56

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 11/56 (19%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           CI+C  CE  CPA AI+   G            Y ID   C+ CG C + CP  AI
Sbjct: 9   CISCGACEGTCPAGAISEGDGQ-----------YVIDADTCLDCGACADGCPTGAI 53


>gi|159162230|pdb|1E08|A Chain A, Structural Model Of The [fe]-HydrogenaseCYTOCHROME C553
           Complex Combining Nmr And Soft-Docking
 gi|159162369|pdb|1GX7|A Chain A, Best Model Of The Electron Transfer Complex Between
           Cytochrome C3 And [fe]-Hydrogenase
          Length = 371

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 24/64 (37%), Gaps = 9/64 (14%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E +CI C  C   CP  AI  E G                +  CI CG C   CP +
Sbjct: 3   QIDEAKCIGCDTCSQYCPTAAIFGEMGEPHSIPH---------IEACINCGQCLTHCPEN 53

Query: 117 AIVE 120
           AI E
Sbjct: 54  AIYE 57


>gi|124039603|dbj|BAF45397.1| vinyl chloride reductive dehalogenase [uncultured bacterium]
          Length = 519

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 5/68 (7%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR----YDIDMIKC-IYCGLCQEACP 114
            E C  C +C  +C +  +  E  P    G    V+    Y  D   C   CG+CQ +CP
Sbjct: 397 FEFCKTCYICRDVCVSGGVHQEDEPTWDSGNWWNVQGYLGYRTDWSGCHNQCGMCQSSCP 456

Query: 115 VDAIVEGP 122
              I    
Sbjct: 457 FTYIGLKN 464


>gi|78224616|ref|YP_386363.1| heterodisulfide reductase subunit [Geobacter metallireducens GS-15]
 gi|78195871|gb|ABB33638.1| Heterodisulfide reductase subunit [Geobacter metallireducens GS-15]
          Length = 665

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            E+ C+AC  C+ +CP  A+  E   R   G    V   ++   C  CG CQ +CP
Sbjct: 590 NEKNCVACLYCKKVCPYGAVE-EKEIRDRQGNLIRVVAYVNPGVCGGCGTCQASCP 644


>gi|78224609|ref|YP_386356.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Geobacter
           metallireducens GS-15]
 gi|78195864|gb|ABB33631.1| Pyruvate:ferredoxin (flavodoxin) oxidoreductase [Geobacter
           metallireducens GS-15]
          Length = 1195

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 22/73 (30%), Gaps = 16/73 (21%)

Query: 58  NGEERCIACKLCEAICPAQ----------------AITIESGPRCHDGTRRTVRYDIDMI 101
             E+ CI C +C  +CP                  A       +  +   + +   +   
Sbjct: 691 WDEQLCIQCGICSFVCPHATIRMKAYDASVLSGAPATFKSVDCKVPEFKGQKLTVQVAPE 750

Query: 102 KCIYCGLCQEACP 114
            C  CG C   CP
Sbjct: 751 DCTGCGACVHNCP 763



 Score = 35.1 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 8/18 (44%), Positives = 9/18 (50%)

Query: 103 CIYCGLCQEACPVDAIVE 120
           CI CG+C   CP   I  
Sbjct: 696 CIQCGICSFVCPHATIRM 713


>gi|89074937|ref|ZP_01161387.1| Hypothetical pyruvate formate lyase activating enzyme
           [Photobacterium sp. SKA34]
 gi|89049334|gb|EAR54897.1| Hypothetical pyruvate formate lyase activating enzyme
           [Photobacterium sp. SKA34]
          Length = 269

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 27/94 (28%), Gaps = 15/94 (15%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
             P     C  C  C   CP QA+                        C  C  C E CP
Sbjct: 16  HNPQIIGICNHCADCVKHCPTQALQTIHTENEKTKVVWNK------ALCTECDKCIEVCP 69

Query: 115 VDAIVEG---PNFEFATETRQELYYDKERLLNNG 145
             A  +      +E   + R+       RLL NG
Sbjct: 70  HQASPKTMTMTVYELIEKIREN------RLLING 97


>gi|146279225|ref|YP_001169383.1| electron transport complex, RnfABCDGE type, D subunit [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145557466|gb|ABP72078.1| electron transport complex, RnfABCDGE type, D subunit [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 519

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/141 (20%), Positives = 42/141 (29%), Gaps = 21/141 (14%)

Query: 20  FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE---RCIACKLCEAICPAQ 76
             L      +    +  P  KG++     G  AL            CI C  C   CP  
Sbjct: 340 LLLGGPMMGQPIQNLRVPVVKGTS-----GILALTTSETPGCETMPCIRCGRCSQACPVG 394

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
               E   R            I ++ CI CG C   CP + I       +A         
Sbjct: 395 LTPFELNARI-QADDLEGAGRIGLLDCITCGCCAFTCPAN-IPLVQTIHYA--------- 443

Query: 137 DKERLLNN-GDRWESEIVRNI 156
            K +L    G + + E  + +
Sbjct: 444 -KGKLAEAEGRKHQQEETKRL 463


>gi|323705704|ref|ZP_08117277.1| pyruvate ferredoxin/flavodoxin oxidoreductase
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323534922|gb|EGB24700.1| pyruvate ferredoxin/flavodoxin oxidoreductase
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 1175

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 24/74 (32%), Gaps = 16/74 (21%)

Query: 57  PNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRRTV-----------RYDIDM 100
               + CI C  C  +CP  AI       E      +G                R  + +
Sbjct: 683 EWQMDNCIQCNQCAYVCPHAAIRPFLLNEEEVKNAPEGFTSKKAVGKGLEGLNFRIQVSV 742

Query: 101 IKCIYCGLCQEACP 114
           + C  CG+C   CP
Sbjct: 743 LDCTGCGVCANTCP 756



 Score = 35.1 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 9/20 (45%), Positives = 9/20 (45%)

Query: 99  DMIKCIYCGLCQEACPVDAI 118
            M  CI C  C   CP  AI
Sbjct: 685 QMDNCIQCNQCAYVCPHAAI 704


>gi|309774562|ref|ZP_07669588.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase
           [Erysipelotrichaceae bacterium 3_1_53]
 gi|308917677|gb|EFP63391.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase
           [Erysipelotrichaceae bacterium 3_1_53]
          Length = 1168

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 27/83 (32%), Gaps = 16/83 (19%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQ-------------AITIESGPRCHDGTRR---TV 94
            A++      E CI C +C  +CP               A  +E       G        
Sbjct: 678 IAVQVPTWHPENCIQCGICSFVCPHATIRPFLLTEEEVAAAPMEFETITPMGKGVENLKY 737

Query: 95  RYDIDMIKCIYCGLCQEACPVDA 117
           R  +    C+ CGLC   CP  A
Sbjct: 738 RIQVTPANCVGCGLCAVECPGKA 760



 Score = 34.7 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 8/20 (40%), Positives = 9/20 (45%)

Query: 99  DMIKCIYCGLCQEACPVDAI 118
               CI CG+C   CP   I
Sbjct: 686 HPENCIQCGICSFVCPHATI 705


>gi|307823817|ref|ZP_07654045.1| electron transport complex, RnfABCDGE type, B subunit
           [Methylobacter tundripaludum SV96]
 gi|307735111|gb|EFO05960.1| electron transport complex, RnfABCDGE type, B subunit
           [Methylobacter tundripaludum SV96]
          Length = 190

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 23/75 (30%), Gaps = 10/75 (13%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
            E  L      E  C  C  C  +CP  AI                 + +    CI C  
Sbjct: 98  KEPELLVARVSEATCTGCTRCFKVCPTDAIVGAPKQ----------IHAVVADACIACKK 147

Query: 109 CQEACPVDAIVEGPN 123
           C E CP + +   P 
Sbjct: 148 CVEVCPTECLQMHPI 162


>gi|302872534|ref|YP_003841170.1| hypothetical protein COB47_1916 [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302575393|gb|ADL43184.1| protein of unknown function DUF362 [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 375

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 11/66 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI C  C   CPAQAI + S               +D+ KCI C  C E CP  AI
Sbjct: 314 DRNICIGCAECFNACPAQAIEMRSRKAY-----------VDLKKCIKCYCCHELCPAKAI 362

Query: 119 VEGPNF 124
               +F
Sbjct: 363 KIKRSF 368


>gi|302339470|ref|YP_003804676.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Spirochaeta smaragdinae DSM 11293]
 gi|301636655|gb|ADK82082.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Spirochaeta smaragdinae DSM 11293]
          Length = 495

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 9/59 (15%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           IAC  C   CPA AIT+E+               +D  +C  C  C   CP  A+    
Sbjct: 375 IACNPCADACPAGAITVETITSLP---------VVDYSRCTGCMRCLSVCPGQAVFMVD 424


>gi|291559406|emb|CBL38206.1| electron transport complex, RnfABCDGE type, C subunit
           [butyrate-producing bacterium SSC/2]
          Length = 438

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 28/89 (31%), Gaps = 3/89 (3%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
               A  T + P  K      F          N    CI C  C ++CP + +       
Sbjct: 330 MMGMAMFTTDVPAVKT--FSCFLAFTKDEVAANQPSNCIRCGRCVSVCPQK-LMPAKLSV 386

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
             D  +      +   +C+ CG C   CP
Sbjct: 387 LADHNQFDEFEKLYGAECVECGSCSFVCP 415


>gi|317152862|ref|YP_004120910.1| putative ferredoxin [Desulfovibrio aespoeensis Aspo-2]
 gi|316943113|gb|ADU62164.1| putative ferredoxin [Desulfovibrio aespoeensis Aspo-2]
          Length = 266

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 14/79 (17%)

Query: 46  RFRGEHALR--RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103
            +RG  AL    + +  E+C  C +C   CP  AI +                 ID  KC
Sbjct: 176 PYRGSSALWSVDFISVSEKCAQCGVCAETCPMGAIDLNDSAV------------IDKEKC 223

Query: 104 IYCGLCQEACPVDAIVEGP 122
           I C  C + CP +A    P
Sbjct: 224 ITCCACIKICPQEARSMKP 242


>gi|289578036|ref|YP_003476663.1| Fe-S cluster domain protein [Thermoanaerobacter italicus Ab9]
 gi|289527749|gb|ADD02101.1| Fe-S cluster domain protein [Thermoanaerobacter italicus Ab9]
          Length = 435

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 23/68 (33%), Gaps = 11/68 (16%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
                     ++RC  C  C   CP +AI +  G              I   +CI CG C
Sbjct: 1   MLYFHSVTLDKDRCRGCTNCIKRCPTEAIRVRDGKA-----------RIINERCIDCGEC 49

Query: 110 QEACPVDA 117
              CP  A
Sbjct: 50  IRVCPYHA 57


>gi|218130166|ref|ZP_03458970.1| hypothetical protein BACEGG_01754 [Bacteroides eggerthii DSM 20697]
 gi|217987670|gb|EEC53998.1| hypothetical protein BACEGG_01754 [Bacteroides eggerthii DSM 20697]
          Length = 502

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 8/80 (10%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIA------CKLCEAICPAQAITIESGPRCHDGTRRTV 94
              +   +    +      +E CI       C  C   CP  AI + +    +  +R+  
Sbjct: 407 RPITKADKSAIQIGHAVWIKENCICITDDVECGNCARHCPVGAIQMVASDPENPESRKIP 466

Query: 95  RYDIDMIKCIYCGLCQEACP 114
              ++  +CI CG C+  CP
Sbjct: 467 V--VNTERCIGCGACENLCP 484



 Score = 40.9 bits (94), Expect = 0.061,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 27/84 (32%), Gaps = 5/84 (5%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100
             +S   R       Y  G  R   C  C  +CPA AI   +             +  + 
Sbjct: 370 RPSSDLTRLMQPEMSYERGYCR-PECTKCAEVCPAGAIRPITKADKSAIQIGHAVWIKEN 428

Query: 101 IKCI----YCGLCQEACPVDAIVE 120
             CI     CG C   CPV AI  
Sbjct: 429 CICITDDVECGNCARHCPVGAIQM 452



 Score = 37.0 bits (84), Expect = 0.95,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 13/78 (16%)

Query: 47  FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
           F  +++L +      +C  C LC   C A  I  ++             ++ID  +C+ C
Sbjct: 210 FLSKYSLFKPVIDTTKCNGCGLCARNCKASCINSKA-------------HEIDYSRCVAC 256

Query: 107 GLCQEACPVDAIVEGPNF 124
             C + C   AI      
Sbjct: 257 MDCLDKCKQGAITYTRRH 274



 Score = 36.2 bits (82), Expect = 1.3,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 34/112 (30%), Gaps = 3/112 (2%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
            +K                 N  + C AC+LC ++CP Q +   S          +    
Sbjct: 329 EKKIPERATAITPPGSMSARNFAQHCTACQLCVSVCPNQVLRPSSDLTRLMQPEMSYERG 388

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWE 149
               +C     C E CP  AI      + +        + KE  +   D  E
Sbjct: 389 YCRPECTK---CAEVCPAGAIRPITKADKSAIQIGHAVWIKENCICITDDVE 437


>gi|150399562|ref|YP_001323329.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus vannielii SB]
 gi|150012265|gb|ABR54717.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           vannielii SB]
          Length = 140

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 16/74 (21%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGT----------------RRTVRYDIDMIKCIYC 106
           C++C  CE ICP  AI +  G                       +   +  ++  KCI C
Sbjct: 10  CVSCGKCERICPLNAIHVFDGIPLRCMHCEDAPCIFACPKDAITKIDDKVVLNPEKCIGC 69

Query: 107 GLCQEACPVDAIVE 120
            LC EACPV AI  
Sbjct: 70  ALCIEACPVGAIDM 83


>gi|78358565|ref|YP_390014.1| heterodisulfide reductase subunit A [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
 gi|78220970|gb|ABB40319.1| heterodisulfide reductase, A subunit [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 652

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 22/61 (36%), Gaps = 7/61 (11%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           RC+ C  C   CP  AI +          R   +  +    C  CG+C   CP  AI   
Sbjct: 583 RCVGCGKCRETCPFGAIEMTE-------FRGMPKASVVETVCQGCGICAVTCPQGAIQLQ 635

Query: 122 P 122
            
Sbjct: 636 H 636



 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 22/77 (28%), Gaps = 13/77 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGP--------RCHDGTRRTVRYDIDMIKCI---- 104
                 C  C  CE  CPA+    +           +         +  I    CI    
Sbjct: 236 YVDWSLCTGCGACEEKCPARKTYDKFNEGIGRTTAIKIAFPQAIPKKAVITPETCIMLTK 295

Query: 105 -YCGLCQEACPVDAIVE 120
             CG C + CP  AI  
Sbjct: 296 GKCGNCAKVCPAGAIQF 312


>gi|134299442|ref|YP_001112938.1| putative PAS/PAC sensor protein [Desulfotomaculum reducens MI-1]
 gi|134052142|gb|ABO50113.1| putative PAS/PAC sensor protein [Desulfotomaculum reducens MI-1]
          Length = 573

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 6/56 (10%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           +C  C  C  IC  +AI      R + G +      +    C++CG C  ACP  A
Sbjct: 9   KCRDCYRCVRICNLKAI------RMNTGHQGRFHAQVIDELCVHCGQCILACPQRA 58


>gi|323702073|ref|ZP_08113741.1| hydrogenase, Fe-only [Desulfotomaculum nigrificans DSM 574]
 gi|323532955|gb|EGB22826.1| hydrogenase, Fe-only [Desulfotomaculum nigrificans DSM 574]
          Length = 657

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 20/63 (31%), Gaps = 3/63 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM---IKCIYCGLCQEACPV 115
              +CI C LC  +C  +        +        V           CI CG C   CP 
Sbjct: 142 DPNKCILCGLCVRVCKEKQGVGVWDFKNRGSRTEIVAAMDQPLAESACINCGQCIAVCPT 201

Query: 116 DAI 118
            A+
Sbjct: 202 GAL 204


>gi|312887265|ref|ZP_07746868.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Mucilaginibacter paludis DSM 18603]
 gi|311300223|gb|EFQ77289.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Mucilaginibacter paludis DSM 18603]
          Length = 542

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 5/61 (8%)

Query: 61  ERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           +RC++C  C        A   ++  +   G R    YD    +C  C +C E CP  AI 
Sbjct: 482 QRCLSCGNCFECDGCFGACPQQAVIKLGKGKRYAFNYD----ECTGCAICYEQCPCHAIA 537

Query: 120 E 120
            
Sbjct: 538 L 538


>gi|289523694|ref|ZP_06440548.1| iron-sulfur cluster-binding/ATPase domain protein [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289503386|gb|EFD24550.1| iron-sulfur cluster-binding/ATPase domain protein [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 297

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 19/62 (30%), Gaps = 11/62 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +RC  C  C  +C   AI                   +    C  CG C   CP  AI
Sbjct: 71  DADRCNHCGRCAEVCAYHAIASLPSKVI-----------VFPELCHGCGACSYLCPESAI 119

Query: 119 VE 120
            E
Sbjct: 120 AE 121



 Score = 34.7 bits (78), Expect = 4.8,   Method: Composition-based stats.
 Identities = 11/43 (25%), Positives = 14/43 (32%)

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            A    +               ID  +C +CG C E C   AI
Sbjct: 48  NANLFVNASIERAEPVHVPTPRIDADRCNHCGRCAEVCAYHAI 90


>gi|282164250|ref|YP_003356635.1| tungsten-containing formylmethanofuran dehydrogenase subunit G
           [Methanocella paludicola SANAE]
 gi|282156564|dbj|BAI61652.1| tungsten-containing formylmethanofuran dehydrogenase subunit G
           [Methanocella paludicola SANAE]
          Length = 80

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 19/67 (28%), Gaps = 4/67 (5%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRT----VRYDIDMIKCIYCGLCQEACPVD 116
             C  C  C   CP  A+ +                     ID   C  CG+C   CP  
Sbjct: 11  RICTGCNNCVVACPVNALELTVINPVTKKKTYNVLNGKAVVIDEDVCNGCGICLMVCPQR 70

Query: 117 AIVEGPN 123
           AI     
Sbjct: 71  AITLTTE 77


>gi|182701711|ref|ZP_02614545.2| iron-sulfur cluster-binding protein [Clostridium botulinum NCTC
           2916]
 gi|182669412|gb|EDT81388.1| iron-sulfur cluster-binding protein [Clostridium botulinum NCTC
           2916]
          Length = 273

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 53/153 (34%), Gaps = 31/153 (20%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRY--PN 58
           M I R     ++ K         ++  F    T   P+ K       +G+    R   P 
Sbjct: 145 MDIVRTFADEIYTKIINEKI---IKTVFVKGNT---PYRKYYMPKDEKGQPIDIRKVKPK 198

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI CKLC  +CP  +I  E   + +               CI C  C + CPV A 
Sbjct: 199 TNNNCINCKLCANLCPMGSIDFEDVTKLN-------------GICIKCCACIKKCPVGA- 244

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
                F+ +      L + KE  L N  R+  E
Sbjct: 245 ---KYFDDSGY----LKHKKE--LENNFRYRKE 268


>gi|313238360|emb|CBY13441.1| unnamed protein product [Oikopleura dioica]
 gi|313243431|emb|CBY42191.1| unnamed protein product [Oikopleura dioica]
          Length = 613

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 21/56 (37%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           K C   C      +  G  C + T       I    CI CG+C + CP +AI    
Sbjct: 17  KKCRQECKKTCPVVRMGKLCIEVTATDKSAKIYETLCIGCGICVKKCPFEAIQIIN 72


>gi|312074026|ref|XP_003139785.1| ATP-binding cassette subfamily E [Loa loa]
 gi|307765049|gb|EFO24283.1| ATP-binding cassette subfamily E [Loa loa]
          Length = 619

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 22/56 (39%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           K C   C      +  G +C      +   +I    CI CG+C + CP +AI    
Sbjct: 28  KNCGLACKKSCPVVRMGKQCIVVESNSKMAEISETLCIGCGICVKKCPYEAIKIIN 83


>gi|260429222|ref|ZP_05783199.1| dihydroorotate dehydrogenase family protein [Citreicella sp. SE45]
 gi|260419845|gb|EEX13098.1| dihydroorotate dehydrogenase family protein [Citreicella sp. SE45]
          Length = 434

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 8/76 (10%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           +    + + +    ++ CI+C  C A C       E              + +   +C+ 
Sbjct: 329 QHLNLNYISKARIDQDACISCGRCYAAC-------EDTSHQAIDMSEDRVFTVKDDECVA 381

Query: 106 CGLCQEACP-VDAIVE 120
           C LC   CP    I  
Sbjct: 382 CNLCVNVCPIEGCITM 397


>gi|298530556|ref|ZP_07017958.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298509930|gb|EFI33834.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 247

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/85 (27%), Positives = 29/85 (34%), Gaps = 13/85 (15%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYD 97
           K  +     G++    Y  G   C+ C    C   CP+ A   E           T    
Sbjct: 40  KEKSPDFSMGKNTYAHYQPG--GCMHCDNPTCVHACPSGATYKEEE---------TGIVQ 88

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           I+   CI CG C  ACP  A    P
Sbjct: 89  INKDMCIGCGNCVVACPYSARYRHP 113



 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 18/68 (26%), Gaps = 9/68 (13%)

Query: 59  GEERCIACKLCEAICPAQA-------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGL--C 109
               CI CK C A C  +                      +          C++C    C
Sbjct: 10  DSSVCIDCKACMASCKVEHGLPRGYWRNWIKEKSPDFSMGKNTYAHYQPGGCMHCDNPTC 69

Query: 110 QEACPVDA 117
             ACP  A
Sbjct: 70  VHACPSGA 77



 Score = 34.3 bits (77), Expect = 5.5,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 21/76 (27%), Gaps = 22/76 (28%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG--------- 107
              ++ CI C  C   CP  A       R                KC YC          
Sbjct: 88  QINKDMCIGCGNCVVACPYSARYRHPTLRV-------------PDKCDYCQDRLAMGLQP 134

Query: 108 LCQEACPVDAIVEGPN 123
            C + CP  A V G  
Sbjct: 135 ACVDTCPTKARVFGDI 150


>gi|222087420|ref|YP_002545957.1| formate dehydrogenase, alpha subunit [Agrobacterium radiobacter
           K84]
 gi|221724868|gb|ACM28024.1| formate dehydrogenase, alpha subunit [Agrobacterium radiobacter
           K84]
          Length = 959

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 3/79 (3%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRT--VRYDIDMI 101
                + +   +     +CI C  C   C   Q     +      G+R +  +       
Sbjct: 160 KWMPKDESNPYFTYDPSKCIVCSRCVRACEEVQGTFALTIEGRGFGSRVSPGMHEHFIDS 219

Query: 102 KCIYCGLCQEACPVDAIVE 120
           +C+ CG C +ACP   + E
Sbjct: 220 ECVSCGACVQACPTATLTE 238


>gi|206891155|ref|YP_002249518.1| hydrogenase-1 [Thermodesulfovibrio yellowstonii DSM 11347]
 gi|206743093|gb|ACI22150.1| hydrogenase-1 [Thermodesulfovibrio yellowstonii DSM 11347]
          Length = 589

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 3/68 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---YDIDMIKCIYCGLCQEACPV 115
              +CI C+ C   C             +             I   +C+ CG C   CP 
Sbjct: 150 NPNKCIICQRCITACKVLQSVDILELYGNGYDAVVRPLGGKPIIETQCVACGQCALVCPT 209

Query: 116 DAIVEGPN 123
            AIVE  +
Sbjct: 210 AAIVERDD 217


>gi|195442589|ref|XP_002069035.1| GK12286 [Drosophila willistoni]
 gi|194165120|gb|EDW80021.1| GK12286 [Drosophila willistoni]
          Length = 611

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 7/75 (9%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP---N 123
           K C   C      +  G  C + T  +    +    CI CG+C + CP +AI       N
Sbjct: 27  KRCRQECKKSCPVVRMGKLCIEVTPTSKIASLSEELCIGCGICVKKCPFEAITIINLPSN 86

Query: 124 FEFATETRQELYYDK 138
            E  T  R    Y+K
Sbjct: 87  LEKHTTHR----YNK 97


>gi|158521017|ref|YP_001528887.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfococcus
           oleovorans Hxd3]
 gi|158509843|gb|ABW66810.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfococcus
           oleovorans Hxd3]
          Length = 778

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 22/66 (33%), Gaps = 10/66 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +       +RC  CK C   CP  A+  +                 +  +C  CG C  A
Sbjct: 559 MTFPDFFFQRCTQCKRCTEECPFGALDDDEKGTPKP----------NPTRCRRCGTCMGA 608

Query: 113 CPVDAI 118
           CP   I
Sbjct: 609 CPERII 614


>gi|197118659|ref|YP_002139086.1| ferredoxin-like protein [Geobacter bemidjiensis Bem]
 gi|253700567|ref|YP_003021756.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           M21]
 gi|197088019|gb|ACH39290.1| ferredoxin-related protein [Geobacter bemidjiensis Bem]
 gi|251775417|gb|ACT17998.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           M21]
          Length = 55

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 11/64 (17%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + CI C  C+  CP  AI+     R            I    CI CG C + CP
Sbjct: 1   MAHTISDECINCGACDDSCPVNAISEAGDKR-----------TIAADTCIDCGACVDTCP 49

Query: 115 VDAI 118
           V AI
Sbjct: 50  VSAI 53


>gi|94263620|ref|ZP_01287430.1| 4Fe-4S ferredoxin, iron-sulfur binding:Zn-finger, C2H2 type [delta
           proteobacterium MLMS-1]
 gi|93456040|gb|EAT06191.1| 4Fe-4S ferredoxin, iron-sulfur binding:Zn-finger, C2H2 type [delta
           proteobacterium MLMS-1]
          Length = 684

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 9/60 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++ C  CK+C+ ICP +AI  +   +            I+ + C  CG C  ACP+ AI
Sbjct: 615 DQQCCTGCKICQNICPYRAIGFDEEKQVAV---------INRVLCRGCGTCAAACPLTAI 665



 Score = 34.7 bits (78), Expect = 4.1,   Method: Composition-based stats.
 Identities = 10/17 (58%), Positives = 13/17 (76%)

Query: 98  IDMIKCIYCGLCQEACP 114
           +D+ +CI CG C EACP
Sbjct: 240 VDLGRCIGCGECIEACP 256



 Score = 33.9 bits (76), Expect = 6.6,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 28/87 (32%), Gaps = 10/87 (11%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV--- 94
            E       F  +   R       RCI C  C   CPA+++  E G              
Sbjct: 220 EEVSGFLGNFLIKVRQRPRFVDLGRCIGCGECIEACPAESVGTEGGRCKAIDFAVPGALP 279

Query: 95  -RYDIDMIKCIY------CGLCQEACP 114
               ID   C+       C LCQ ACP
Sbjct: 280 NVPKIDPGLCLRGGSDPECRLCQTACP 306


>gi|118580576|ref|YP_901826.1| ferredoxin-dependent glutamate synthase [Pelobacter propionicus DSM
           2379]
 gi|118503286|gb|ABK99768.1| ferredoxin-dependent glutamate synthase [Pelobacter propionicus DSM
           2379]
          Length = 547

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 22/75 (29%), Gaps = 14/75 (18%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCH--------------DGTRRTVRYDIDMIKC 103
               RC  C  C A C   AI      R                       + ++    C
Sbjct: 20  YDTTRCTLCGSCVAACTFGAIKPRIERRRKAFSDTETPEPKISFKAVPVITQLNVLKHYC 79

Query: 104 IYCGLCQEACPVDAI 118
             CG+C+  CP  AI
Sbjct: 80  RGCGVCERVCPNSAI 94


>gi|114567346|ref|YP_754500.1| NADH dehydrogenase I subunit G [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114338281|gb|ABI69129.1| NADH dehydrogenase I chain G [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 363

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 20/65 (30%), Gaps = 3/65 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---YDIDMIKCIYCGLCQEACPV 115
              +CI C  C   C                 R+       D     C++CG C   CP 
Sbjct: 155 DLNKCILCGACVRACEELTGADNLSYLKRGFHRKATTAGDVDYIDSDCVFCGQCVAVCPT 214

Query: 116 DAIVE 120
            A+ E
Sbjct: 215 GALTE 219


>gi|312880734|ref|ZP_07740534.1| electron transport complex, RnfABCDGE type, B subunit [Aminomonas
           paucivorans DSM 12260]
 gi|310784025|gb|EFQ24423.1| electron transport complex, RnfABCDGE type, B subunit [Aminomonas
           paucivorans DSM 12260]
          Length = 271

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 11/60 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +  CI C LC   CP  A+ +E+               ID  KC  C LC + CP  AI
Sbjct: 214 CQVGCIGCGLCVKACPNDAVHVENNLA-----------RIDPDKCTQCCLCVDKCPTKAI 262



 Score = 40.5 bits (93), Expect = 0.074,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 5/70 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK-----CIYCGLCQEAC 113
            E +C+ C  C  +CP   I +    +       +     D+ K     CI CGLC +AC
Sbjct: 169 DEAKCVGCGACVTLCPKGLIELVPLDQRVRVACHSTHRGPDVKKACQVGCIGCGLCVKAC 228

Query: 114 PVDAIVEGPN 123
           P DA+    N
Sbjct: 229 PNDAVHVENN 238


>gi|290769854|gb|ADD61626.1| putative protein [uncultured organism]
          Length = 295

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 15/77 (19%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
               +L +     ++C++C  C   C                    +    +  +CI CG
Sbjct: 224 MNRVSLFQMRVDTDKCVSCGACARACKMD---------------VDITKTPNHAECIRCG 268

Query: 108 LCQEACPVDAIVEGPNF 124
           +C ++CP  AI     F
Sbjct: 269 MCIKSCPTKAIHYQYGF 285


>gi|294505910|ref|YP_003569968.1| pyridine nucleotide-disulphide oxidoreductase domain protein
           [Salinibacter ruber M8]
 gi|294342238|emb|CBH23016.1| Pyridine nucleotide-disulphide oxidoreductase domain protein
           [Salinibacter ruber M8]
          Length = 839

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 9/63 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +++CI+C  C ++C      +    +            +D  +C+ C  C E CP   +
Sbjct: 755 DKKKCISCNQCTSVCHQGIDVMAYAQKGEP---------MDDPECVRCSACVETCPTGVL 805

Query: 119 VEG 121
             G
Sbjct: 806 EFG 808


>gi|270296779|ref|ZP_06202978.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270272766|gb|EFA18629.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 498

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 8/80 (10%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCI------ACKLCEAICPAQAITIESGPRCHDGTRRTV 94
              +   +    +      ++ CI       C  C   CP  AI +         + +  
Sbjct: 403 RPITKADKSSVQIGHAVWVKKNCIPLTDGVQCGNCARHCPTGAIQMVPSIPEDKDSPKIP 462

Query: 95  RYDIDMIKCIYCGLCQEACP 114
              I++ +CI CG C+  CP
Sbjct: 463 V--INVERCIGCGACENLCP 480



 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 25/91 (27%), Gaps = 4/91 (4%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +    S   R                 C  C  +CPA AI   +             
Sbjct: 360 CPNQVLRPSADLRKLMQPEMSYERGYCRPECTKCSEVCPAGAIRPITKADKSSVQIGHAV 419

Query: 96  Y----DIDMIKCIYCGLCQEACPVDAIVEGP 122
           +     I +   + CG C   CP  AI   P
Sbjct: 420 WVKKNCIPLTDGVQCGNCARHCPTGAIQMVP 450



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 13/72 (18%)

Query: 47  FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
           F   ++L R     E+C  C LC   C A  I  +              + ID  +C+ C
Sbjct: 211 FLSRYSLFRITIDSEKCNQCSLCSRNCKAACINFKE-------------HQIDASRCVVC 257

Query: 107 GLCQEACPVDAI 118
             C E C   AI
Sbjct: 258 MNCIEKCKHGAI 269



 Score = 33.9 bits (76), Expect = 7.4,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 3/58 (5%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C AC+LC + CP Q +   +  R       +        +C     C E CP  AI
Sbjct: 348 QHCTACQLCVSACPNQVLRPSADLRKLMQPEMSYERGYCRPECTK---CSEVCPAGAI 402


>gi|261402607|ref|YP_003246831.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus vulcanius M7]
 gi|261369600|gb|ACX72349.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus vulcanius M7]
          Length = 161

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 10/81 (12%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
            +     P+F      R     E++CI C  C  +CP  AIT  +           +   
Sbjct: 13  EDNIKLLPKFNIVLNRREIIVKEDKCIGCGKCREVCPTNAITYNNK----------LHIV 62

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           I+  KC++CG C+E CP +AI
Sbjct: 63  INREKCVFCGKCKEVCPTNAI 83



 Score = 35.5 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 24/72 (33%), Gaps = 6/72 (8%)

Query: 55  RYPNGEERCIACKLCEAICPAQA------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
                 E+C+ C  C+ +CP  A                    +    +    +C  C +
Sbjct: 60  HIVINREKCVFCGKCKEVCPTNAIVIIRLRCEIKEDAKIIEVDKYEFIEYLSERCASCLV 119

Query: 109 CQEACPVDAIVE 120
           C + CP  AI E
Sbjct: 120 CLKNCPFHAIEE 131


>gi|223993977|ref|XP_002286672.1| hypothetical protein THAPSDRAFT_31316 [Thalassiosira pseudonana
           CCMP1335]
 gi|220977987|gb|EED96313.1| hypothetical protein THAPSDRAFT_31316 [Thalassiosira pseudonana
           CCMP1335]
          Length = 1192

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/148 (18%), Positives = 44/148 (29%), Gaps = 42/148 (28%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTRR 92
           +EK   +P      AL    N    C  C  C A+CP   I     T +   +     + 
Sbjct: 695 YEKRRPNPS-----ALIPKWN-ASACTQCNQCVAVCPHAVIRPFIITRDEAEQAPHPDQF 748

Query: 93  TVRY-------------DIDMIKCIYCGLCQEACPV--DAIVEGP-------------NF 124
                             I  + C  C  C EACP    A+                 NF
Sbjct: 749 QTVKALGTELAGKRYTLQISPLDCTGCNACVEACPEAPKALEMQDVEDVLSKGGEDNWNF 808

Query: 125 EFATETRQELYYDKERLLNNGDRWESEI 152
                 R +L    ++    G ++++ +
Sbjct: 809 AMTLPERGDLV---DKYTVKGSQFQTPL 833


>gi|218261737|ref|ZP_03476472.1| hypothetical protein PRABACTJOHN_02143 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223813|gb|EEC96463.1| hypothetical protein PRABACTJOHN_02143 [Parabacteroides johnsonii
           DSM 18315]
          Length = 301

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 15/89 (16%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ++CI C+ C   CP QA+T+       DG            +C  CG+C E CP  A+  
Sbjct: 50  KKCIGCRTCVEACPQQALTLTPEGIVTDG-----------ARCTLCGICAEVCPALAMEI 98

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWE 149
                    + + L  + E+     DR E
Sbjct: 99  SG----TEYSAEALMKEIEKETVFMDRSE 123


>gi|195446906|ref|XP_002070975.1| GK25544 [Drosophila willistoni]
 gi|194167060|gb|EDW81961.1| GK25544 [Drosophila willistoni]
          Length = 1033

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 18/65 (27%), Gaps = 8/65 (12%)

Query: 59   GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP-VDA 117
             ++ CI C  C   C                  +          C  C LC   CP +D 
Sbjct: 949  NDDMCINCGKCYMTCA-------DSGYQAIEFDKDTHLPHVNDDCTGCTLCVSVCPIIDC 1001

Query: 118  IVEGP 122
            I   P
Sbjct: 1002 ITMEP 1006


>gi|170756324|ref|YP_001781395.1| [Fe] hydrogenase [Clostridium botulinum B1 str. Okra]
 gi|169121536|gb|ACA45372.1| iron hydrogenase 1 [Clostridium botulinum B1 str. Okra]
          Length = 577

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 3/68 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIE---SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
             ++CI C+ C  +C            G              I    C +CG C   CP 
Sbjct: 149 DMDKCILCRRCITMCNEVQTVGTLSAIGRGFETVVAPAFSEAIKNTNCTFCGQCVSVCPT 208

Query: 116 DAIVEGPN 123
            A+ E  N
Sbjct: 209 GALTEVNN 216


>gi|168180425|ref|ZP_02615089.1| [Fe] hydrogenase [Clostridium botulinum NCTC 2916]
 gi|182668697|gb|EDT80675.1| [Fe] hydrogenase [Clostridium botulinum NCTC 2916]
          Length = 577

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 3/68 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIE---SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
             ++CI C+ C  +C            G              I    C +CG C   CP 
Sbjct: 149 DMDKCILCRRCITMCNEVQTVGTLSAIGRGFETVVAPAFSEAIKNTNCTFCGQCVSVCPT 208

Query: 116 DAIVEGPN 123
            A+ E  N
Sbjct: 209 GALTEVNN 216


>gi|159897825|ref|YP_001544072.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Herpetosiphon aurantiacus ATCC 23779]
 gi|159890864|gb|ABX03944.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 84

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 15/97 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +       +RCIAC  CE +CP  A+ IE                +    C +C  C+ A
Sbjct: 1   MVLPVINLQRCIACGACEHVCPTAAVAIEQQHAVL----------VKPEACTFCDRCEIA 50

Query: 113 CPVDAIVEGPNFEFATETRQELYYDKERL--LNNGDR 147
           CP +AI       FA  ++      K +L  LN GDR
Sbjct: 51  CPTEAISRSFAIRFAPSSQP---LTKAQLGQLNLGDR 84


>gi|94266345|ref|ZP_01290046.1| 4Fe-4S ferredoxin, iron-sulfur binding:Zn-finger, C2H2 type [delta
           proteobacterium MLMS-1]
 gi|93453059|gb|EAT03541.1| 4Fe-4S ferredoxin, iron-sulfur binding:Zn-finger, C2H2 type [delta
           proteobacterium MLMS-1]
          Length = 785

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 9/60 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++ C  CK+C  ICP +AI  +   +            I+ + C  CG C  ACP+ AI
Sbjct: 716 DQQCCTGCKICRNICPYRAIGFDEEKQVAV---------INRVLCRGCGTCAAACPLTAI 766



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 28/87 (32%), Gaps = 10/87 (11%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV--- 94
            E       F  +   R       RCI C  C   CPA++  +E G              
Sbjct: 321 EEVSGFLGNFLVKVRQRPRFVDLGRCIGCGECIEACPAESAGVEGGKCKAIDFAVPGALP 380

Query: 95  -RYDIDMIKCIY------CGLCQEACP 114
               ID   C+       C LCQ ACP
Sbjct: 381 NVPKIDPDLCLRGGSDPECRLCQTACP 407


>gi|83815223|ref|YP_444241.1| pyridine nucleotide-disulphide oxidoreductase domain-containing
           protein [Salinibacter ruber DSM 13855]
 gi|83756617|gb|ABC44730.1| Pyridine nucleotide-disulphide oxidoreductase domain protein
           [Salinibacter ruber DSM 13855]
          Length = 846

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 9/63 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +++CI+C  C ++C      +    +            +D  +C+ C  C E CP   +
Sbjct: 762 DKKKCISCNQCTSVCHQGIDVMAYAQKGEP---------MDDPECVRCSACVETCPTGVL 812

Query: 119 VEG 121
             G
Sbjct: 813 EFG 815


>gi|78224215|ref|YP_385962.1| Fe(III) reductase subunit alpha [Geobacter metallireducens GS-15]
 gi|78195470|gb|ABB33237.1| Fe(III) reductase, alpha subunit [Geobacter metallireducens GS-15]
          Length = 831

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 21/66 (31%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            +   RCI C+ C  +                        D   + C +CG C  ACP  
Sbjct: 140 ESDPNRCILCEKCVKVDHEVVGCDAIAVVNRGEATIIDTIDGKPLNCEFCGNCVGACPTG 199

Query: 117 AIVEGP 122
            ++  P
Sbjct: 200 TLISKP 205


>gi|21226713|ref|NP_632635.1| Iron-sulfur cluster-binding protein [Methanosarcina mazei Go1]
 gi|20905001|gb|AAM30307.1| Iron-sulfur cluster-binding protein [Methanosarcina mazei Go1]
          Length = 376

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/100 (26%), Positives = 35/100 (35%), Gaps = 15/100 (15%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
            T   P          R    ++ + N   +C  CK C   C A AI   +         
Sbjct: 289 VTAMVP---PFLMRTLRKYLTVKPFIN-TSKCALCKACVLNCSAHAIEEMN--------- 335

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
                 I+  KCI C  C+E CP DA+    +F     TR
Sbjct: 336 --KTLKINPEKCIQCYCCRELCPNDAVEIRKSFLMKVVTR 373


>gi|56478033|ref|YP_159622.1| 2-ketoglutarate: NADP oxidoreductase, gamma subunit [Aromatoleum
           aromaticum EbN1]
 gi|56314076|emb|CAI08721.1| 2-ketoglutarate: NADP oxidoreductase gamma subunit [Aromatoleum
           aromaticum EbN1]
          Length = 595

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 26/80 (32%), Gaps = 20/80 (25%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHD--------------------GTRRTVRYDIDMIK 102
           CI C  C  ICP + IT  +     +                    G +       D   
Sbjct: 501 CIECDACVDICPTECITFTADGEEEELRARLKVPAKNLEQSLYLAEGLKTGRVMVKDENV 560

Query: 103 CIYCGLCQEACPVDAIVEGP 122
           C++CG+C E CP  A     
Sbjct: 561 CLHCGMCAERCPTGAWDMQK 580


>gi|91975103|ref|YP_567762.1| formate dehydrogenase, alpha subunit [Rhodopseudomonas palustris
           BisB5]
 gi|91681559|gb|ABE37861.1| formate dehydrogenase, alpha subunit [Rhodopseudomonas palustris
           BisB5]
          Length = 948

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 3/81 (3%)

Query: 55  RYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDM--IKCIYCGLCQE 111
            +     +CI C  C   C   Q     +      G+  +          +C+ CG C +
Sbjct: 159 YFTYDASKCIVCSRCVRACEEVQGTFALTIAGRGFGSVVSPGMQESFLGSECVSCGACVQ 218

Query: 112 ACPVDAIVEGPNFEFATETRQ 132
           ACP   + E    E  T  R 
Sbjct: 219 ACPTATLNEKSVIEIGTPERS 239


>gi|326392042|ref|ZP_08213536.1| Fe-S cluster domain protein [Thermoanaerobacter ethanolicus JW 200]
 gi|325991921|gb|EGD50419.1| Fe-S cluster domain protein [Thermoanaerobacter ethanolicus JW 200]
          Length = 437

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 11/59 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
            ++RC  C  C   CP +AI +  G              I   +CI CG C   CP  A
Sbjct: 10  DKDRCRGCTNCIKRCPTEAIRVRDGKA-----------RIINERCIDCGECIRVCPYHA 57


>gi|312143460|ref|YP_003994906.1| electron transport complex, RnfABCDGE type, B subunit
           [Halanaerobium sp. 'sapolanicus']
 gi|311904111|gb|ADQ14552.1| electron transport complex, RnfABCDGE type, B subunit
           [Halanaerobium sp. 'sapolanicus']
          Length = 331

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 11/61 (18%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CIAC LC   CP  AI ++                ID  KC+ CG+C E CP   I    
Sbjct: 217 CIACSLCVKACPVDAIEMKDNLAV-----------IDYEKCVDCGICAEKCPTGTIEFQG 265

Query: 123 N 123
            
Sbjct: 266 E 266



 Score = 42.0 bits (97), Expect = 0.029,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 27/78 (34%), Gaps = 5/78 (6%)

Query: 59  GEERCIACKLCEAICPAQA-----ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
             + C  C  C   CP           ++  RC       +      + CI C LC +AC
Sbjct: 168 DPDVCTGCGKCIEECPRNILLLAPYKSKNHIRCSSHNIGKIVRKTCEVGCIACSLCVKAC 227

Query: 114 PVDAIVEGPNFEFATETR 131
           PVDAI    N       +
Sbjct: 228 PVDAIEMKDNLAVIDYEK 245



 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 25/91 (27%), Positives = 32/91 (35%), Gaps = 11/91 (12%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
                    EK  T         ++      + C+ C LC   CP  A+  E        
Sbjct: 245 KCVDCGICAEKCPTGTIEFQGERIKN-VEINDNCVGCTLCAKACPVDAVEGEIKK----- 298

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
                 + ID   CI CGLC EAC VDA+  
Sbjct: 299 -----LHKIDQNLCIQCGLCYEACNVDAVDL 324



 Score = 38.2 bits (87), Expect = 0.36,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 10/56 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            +  C+    C+ ICP  AI +                 ID   C  CG C E CP
Sbjct: 138 CQYSCMGFGDCKVICPFDAIIMNDNGLPE----------IDPDVCTGCGKCIEECP 183


>gi|301059378|ref|ZP_07200305.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300446607|gb|EFK10445.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 169

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 26/71 (36%), Gaps = 10/71 (14%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           Y     +C  C +C   CP +AI+                + I   KCI CG C EACP 
Sbjct: 72  YEIDSHKCQGCMICARRCPVEAISGGKKQA----------HVIAQDKCIKCGTCLEACPH 121

Query: 116 DAIVEGPNFEF 126
            +       E 
Sbjct: 122 GSAPWKCILEP 132


>gi|291519330|emb|CBK74551.1| electron transport complex, RnfABCDGE type, C subunit/electron
           transport complex, RnfABCDGE type, D subunit
           [Butyrivibrio fibrisolvens 16/4]
          Length = 760

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 26/83 (31%), Gaps = 7/83 (8%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP-----VDA 117
           CI C  C   CP   I          G +        +  CI CG C  ACP       A
Sbjct: 366 CINCGRCVEACPENLIPSRLSKFSDHGDKEQFEKWYGLE-CIECGSCSYACPAKQPLAQA 424

Query: 118 IVEGPNFEFATETRQELYYDKER 140
           I        A E R+     K+ 
Sbjct: 425 IKTMKKIVLA-EKRKSRKERKDM 446



 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 10/28 (35%), Positives = 13/28 (46%)

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIV 119
                + +   CI CG C EACP + I 
Sbjct: 355 YDDVSEQETTACINCGRCVEACPENLIP 382


>gi|268610343|ref|ZP_06144070.1| hypothetical protein RflaF_12691 [Ruminococcus flavefaciens FD-1]
          Length = 205

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 29/84 (34%), Gaps = 14/84 (16%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
             P E+   S  F G           + CI C  C + CP   I ++             
Sbjct: 133 KKPIERD--SFTFGGAEIRASGYFVTDDCIRCGSCLSDCPQSCIELKEKAV--------- 181

Query: 95  RYDIDMIKCIYCGLCQEACPVDAI 118
              I    C++CG C   CPV A+
Sbjct: 182 ---IRQENCLHCGNCAAVCPVGAV 202


>gi|265766041|ref|ZP_06094082.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
 gi|263253709|gb|EEZ25174.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
          Length = 278

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 19/64 (29%), Gaps = 12/64 (18%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
             +   E  C  C  C  +CP  AI                       +CI C  C + C
Sbjct: 202 TPWVEDESLCTHCGACAKMCPVSAIAKGDELNTD------------AERCIKCCACVKGC 249

Query: 114 PVDA 117
           P  A
Sbjct: 250 PQKA 253



 Score = 38.2 bits (87), Expect = 0.45,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
             +  D   C +CG C + CPV AI +G  
Sbjct: 202 TPWVEDESLCTHCGACAKMCPVSAIAKGDE 231


>gi|254475131|ref|ZP_05088517.1| dihydroorotate dehydrogenase family protein [Ruegeria sp. R11]
 gi|214029374|gb|EEB70209.1| dihydroorotate dehydrogenase family protein [Ruegeria sp. R11]
          Length = 434

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 8/62 (12%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-AI 118
           ++ CI C  C A C       E              + +   +C+ C LC   CPV+  I
Sbjct: 344 QDDCIKCGRCFAAC-------EDTSHQAIAMSEDRVFTVKDDECVACNLCVNVCPVEGCI 396

Query: 119 VE 120
             
Sbjct: 397 TM 398


>gi|149195082|ref|ZP_01872174.1| pyruvate flavodoxin oxidoreductase subunit delta [Caminibacter
           mediatlanticus TB-2]
 gi|149134795|gb|EDM23279.1| pyruvate flavodoxin oxidoreductase subunit delta [Caminibacter
           mediatlanticus TB-2]
          Length = 132

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 21/58 (36%), Gaps = 1/58 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
             E CI C  C   CP     +E       G ++     I+   C  C +C E CP  
Sbjct: 52  NRELCIDCDFCWVSCPDSCFLVEEVVN-KRGKKQAKIVGINYNLCKGCAVCVEVCPTP 108


>gi|126179324|ref|YP_001047289.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit
           [Methanoculleus marisnigri JR1]
 gi|125862118|gb|ABN57307.1| formate dehydrogenase, beta subunit (F420) [Methanoculleus
           marisnigri JR1]
          Length = 412

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 9/74 (12%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICP---------AQAITIESGPRCHDGTRRTVRYDID 99
           G+  L++  +   RCI C  C   CP          +A  +E G          +RY   
Sbjct: 280 GKERLKKIMDATSRCIKCYACIENCPICYCVECSTKKAYLVEPGQVPPPFMFHLIRYAHI 339

Query: 100 MIKCIYCGLCQEAC 113
              CI CG C+E C
Sbjct: 340 SDSCINCGQCEENC 353


>gi|22074759|gb|AAM19067.1| RNase L inhibitor-like protein [Oryza sativa Japonica Group]
          Length = 604

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           K C   C      +++G  C + T  +    I    CI CG+C + CP DAI    
Sbjct: 19  KKCRQECKKSCPVVKTGKLCIEVTPASKLAFISEELCIGCGICVKKCPFDAIEIIN 74


>gi|53714499|ref|YP_100491.1| putative ferredoxin [Bacteroides fragilis YCH46]
 gi|253565000|ref|ZP_04842456.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
 gi|52217364|dbj|BAD49957.1| putative ferredoxin [Bacteroides fragilis YCH46]
 gi|251946465|gb|EES86842.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
          Length = 278

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 19/64 (29%), Gaps = 12/64 (18%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
             +   E  C  C  C  +CP  AI                       +CI C  C + C
Sbjct: 202 TPWVEDESLCTHCGACAKMCPVSAIAKGDELNTD------------AERCIKCCACVKGC 249

Query: 114 PVDA 117
           P  A
Sbjct: 250 PQKA 253



 Score = 38.2 bits (87), Expect = 0.45,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 15/30 (50%)

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
             +  D   C +CG C + CPV AI +G  
Sbjct: 202 TPWVEDESLCTHCGACAKMCPVSAIAKGDE 231


>gi|41017304|sp|Q49180|MVHB_METFE RecName: Full=Polyferredoxin protein mvhB
 gi|149806|gb|AAA72833.1| polyferredoxin (mvhB) [Methanothermus fervidus]
          Length = 412

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            EE+CI C +C   CP       SG +    +R    + +D  +CI C  C E CP   I
Sbjct: 173 DEEKCIKCGICAQTCPWN-SVYISGKKPQKSSRTIENFTLDKEECIGCNTCVEICPGGFI 231



 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 1/65 (1%)

Query: 60  EERCIACKLCEAICPAQAIT-IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              C  C  C  +CP  A+  +E   + +  T +  R   +   C  CG C + CP   +
Sbjct: 321 YTICTTCGACTTVCPTGALKLVEVSKKVNGETVKRNRIQYNPSLCDKCGNCVDVCPYGIL 380

Query: 119 VEGPN 123
               +
Sbjct: 381 KLTDD 385



 Score = 42.4 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            C+ C+ C  +CP + I IE          +  +  I ++ C+ CGLC   CPV+AI  
Sbjct: 106 FCVLCQQCVNVCPIEVIGIEGVKEPARVEIKIDKP-IYIVDCVGCGLCVPECPVNAITL 163



 Score = 42.0 bits (97), Expect = 0.028,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 10/80 (12%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE- 120
            C+ C LC   CP  AIT+          +     +ID  KCI CG+C + CP +++   
Sbjct: 145 DCVGCGLCVPECPVNAITL---------PKYGESIEIDEEKCIKCGICAQTCPWNSVYIS 195

Query: 121 GPNFEFATETRQELYYDKER 140
           G   + ++ T +    DKE 
Sbjct: 196 GKKPQKSSRTIENFTLDKEE 215



 Score = 42.0 bits (97), Expect = 0.028,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 22/63 (34%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
             +E C  C  C   CP +AI + S         + V        C  CG C   CP  A
Sbjct: 279 YNDENCKFCGRCALNCPNEAIRVVSPKGRVFPGLKKVDEKESYTICTTCGACTTVCPTGA 338

Query: 118 IVE 120
           +  
Sbjct: 339 LKL 341



 Score = 37.4 bits (85), Expect = 0.71,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 25/75 (33%), Gaps = 5/75 (6%)

Query: 52  ALRRYPNGEERCIACK---LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           A+   P     C  C     C   CP  A+  E      +G  +  +      KC  CG 
Sbjct: 23  AISVKPEDVIYCDMCGGEPKCVEACPNDALRHED--ITLEGGIKKKKITYSPEKCDKCGE 80

Query: 109 CQEACPVDAIVEGPN 123
           C + CP   +    +
Sbjct: 81  CVKVCPPGILKLVND 95



 Score = 37.0 bits (84), Expect = 0.95,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E C AC LCE +CP  AI +E                 +   C +CG C   CP +AI
Sbjct: 242 PEICPACGLCEKLCPTDAIELE-VKLGPAKPVTEEGIVYNDENCKFCGRCALNCPNEAI 299



 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 13/26 (50%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPN 123
           I+   CI CG CQ  CP  AI   P 
Sbjct: 4   INKEDCIRCGACQGVCPTGAISVKPE 29


>gi|302389274|ref|YP_003825095.1| electron transport complex, RnfABCDGE type, B subunit
           [Thermosediminibacter oceani DSM 16646]
 gi|302199902|gb|ADL07472.1| electron transport complex, RnfABCDGE type, B subunit
           [Thermosediminibacter oceani DSM 16646]
          Length = 345

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 10/61 (16%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            + CI C +C   CP  AI+ E   +            ++   CI C +C+E CP  AI 
Sbjct: 276 NDNCIGCTICAKNCPVNAISGEVKKKHE----------VNAELCIGCSICEEKCPKGAIT 325

Query: 120 E 120
            
Sbjct: 326 M 326



 Score = 42.4 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 22/59 (37%), Gaps = 10/59 (16%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           CI    C  +CP  AIT+                 ID  KC  CGLC + CP   I   
Sbjct: 144 CIGFGDCAKVCPVGAITMSENGLPV----------IDEEKCTGCGLCAKECPKQVIALT 192



 Score = 42.0 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 24/56 (42%), Gaps = 11/56 (19%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           CIACK CE  CP  AI + +               ID  KC  C  C E CP  AI
Sbjct: 219 CIACKQCEKACPFDAIHVVNNVAI-----------IDYEKCRNCMKCVEKCPTKAI 263



 Score = 40.9 bits (94), Expect = 0.057,   Method: Composition-based stats.
 Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 5/70 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV-----RYDIDMIKCIYCGLCQEAC 113
            EE+C  C LC   CP Q I + S         R         D+  + CI C  C++AC
Sbjct: 170 DEEKCTGCGLCAKECPKQVIALTSAKNEVHVRCRATLKAKDTRDVCKVGCIACKQCEKAC 229

Query: 114 PVDAIVEGPN 123
           P DAI    N
Sbjct: 230 PFDAIHVVNN 239



 Score = 38.9 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 9/60 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E+C  C  C   CP +AIT     R            +    CI C +C + CPV+AI
Sbjct: 244 DYEKCRNCMKCVEKCPTKAITSAFAERKKA---------VINDNCIGCTICAKNCPVNAI 294


>gi|237714546|ref|ZP_04545027.1| ferredoxin [Bacteroides sp. D1]
 gi|229445315|gb|EEO51106.1| ferredoxin [Bacteroides sp. D1]
          Length = 300

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 9/65 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C+ C  C A C   AI +                ++D  KC  CG C +ACP   I
Sbjct: 121 CSYGCLGCGDCVAACQFDAIHMNPETGLP---------EVDEAKCTACGACVKACPKAII 171

Query: 119 VEGPN 123
              P 
Sbjct: 172 EIRPQ 176



 Score = 40.9 bits (94), Expect = 0.069,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 26/76 (34%), Gaps = 8/76 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------DMIKCIYCGLCQ 110
            E +C AC  C   CP   I I    +       +               + CI CG C 
Sbjct: 152 DEAKCTACGACVKACPKAIIEIRPQGKKSRRVYVSCVNKDKGAVARKACTVSCIGCGKCV 211

Query: 111 EACPVDAIVEGPNFEF 126
           + CP +AI    N  +
Sbjct: 212 KTCPFEAITLENNLAY 227



 Score = 40.1 bits (92), Expect = 0.097,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 11/62 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI C  C   CP +AIT+E+               ID  KC  C  C E CP ++I
Sbjct: 200 CTVSCIGCGKCVKTCPFEAITLENNLAY-----------IDPHKCKSCRKCVEVCPQNSI 248

Query: 119 VE 120
           +E
Sbjct: 249 IE 250


>gi|22328793|ref|NP_193656.2| ATRLI2; transporter [Arabidopsis thaliana]
 gi|75330288|sp|Q8LPJ4|AB2E_ARATH RecName: Full=ABC transporter E family member 2; Short=ABC
           transporter ABCE.2; Short=AtABCE2; AltName: Full=RNase L
           inhibitor-like protein 2; Short=AtRLI2; Short=AthaRLI2
 gi|20466462|gb|AAM20548.1| RNase L inhibitor-like protein [Arabidopsis thaliana]
 gi|23198180|gb|AAN15617.1| RNase L inhibitor-like protein [Arabidopsis thaliana]
 gi|110742163|dbj|BAE99009.1| RNase L inhibitor-like protein [Arabidopsis thaliana]
 gi|332658760|gb|AEE84160.1| ABC transporter E family member 2 [Arabidopsis thaliana]
          Length = 605

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           K C   C      +++G  C + T  +    I    CI CG+C + CP +AI    
Sbjct: 19  KKCRQECKKSCPVVKTGKLCIEVTVGSKLAFISEELCIGCGICVKKCPFEAIQIIN 74


>gi|99081341|ref|YP_613495.1| dihydropyrimidine dehydrogenase [Ruegeria sp. TM1040]
 gi|99037621|gb|ABF64233.1| dihydropyrimidine dehydrogenase (NADP+) / dihydrouracil
           dehydrogenase (NAD+) / dihydroorotate oxidase B,
           catalytic subunit [Ruegeria sp. TM1040]
          Length = 434

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 8/76 (10%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI C  C A C       E              + +   +C+ 
Sbjct: 330 QYLDLNYVTKAKISQDDCIKCGRCYAAC-------EDTSHQAIEMSADRTFTVKDDECVA 382

Query: 106 CGLCQEACPVD-AIVE 120
           C LC   CPV+  I  
Sbjct: 383 CNLCVNVCPVEGCITM 398


>gi|332527354|ref|ZP_08403410.1| 4Fe-4S ferredoxin [Rubrivivax benzoatilyticus JA2]
 gi|332111763|gb|EGJ11743.1| 4Fe-4S ferredoxin [Rubrivivax benzoatilyticus JA2]
          Length = 85

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 20/93 (21%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC------GLCQEACP 114
           + CI C +CE  CP QAI++              RY+ID  +C  C        C + CP
Sbjct: 7   DECINCDVCEPECPNQAISMGDE-----------RYEIDPRRCTECVGHFDEPQCVQVCP 55

Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLNNGDR 147
           V+ I   P      ETR++L    + L   G R
Sbjct: 56  VECIPVNPEH---VETREQLRLKFQALQAGGAR 85


>gi|320584021|gb|EFW98233.1| RNAse L inhibitor-type ATP binding cassette protein [Pichia angusta
           DL-1]
          Length = 606

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 22/56 (39%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           K C   C      +++G  C +    +    I    CI CG+C + CP  AI    
Sbjct: 19  KKCRQECRKSCPVVKTGKLCIEVAPTSKIAFISENLCIGCGICVKKCPFGAINIIN 74


>gi|322368098|ref|ZP_08042667.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haladaptatus
           paucihalophilus DX253]
 gi|320552114|gb|EFW93759.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haladaptatus
           paucihalophilus DX253]
          Length = 106

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 26/78 (33%), Gaps = 2/78 (2%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100
           G      +            + CIA   C   CP         P   +   +    +   
Sbjct: 24  GPVDEPDKLGIHGTHVAVDFDLCIADGACLEDCPVDVFEWVDTPGHPESEEKADPAN--E 81

Query: 101 IKCIYCGLCQEACPVDAI 118
            +CI C LC + CPVDAI
Sbjct: 82  AQCIDCMLCVDVCPVDAI 99


>gi|307256193|ref|ZP_07537980.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306865374|gb|EFM97270.1| Electron transport complex protein rnfC [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 661

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/107 (20%), Positives = 34/107 (31%), Gaps = 3/107 (2%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           P  E  CI C  C   CP   +  +               +  +  CI CG+C   CP  
Sbjct: 379 PEPERSCIRCSSCSDACPVG-LLPQQLYWYARSEDHDKSKEYHLDACIECGVCAYVCP-S 436

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
            I     F        E+    ++      R+E+   R +  +   R
Sbjct: 437 YIPLIQYFRQEKAKITEIEEKAKKAEEAKARFEAREAR-LQKEKDAR 482


>gi|291526378|emb|CBK91965.1| 4Fe-4S binding domain [Eubacterium rectale DSM 17629]
 gi|291526823|emb|CBK92409.1| 4Fe-4S binding domain [Eubacterium rectale M104/1]
          Length = 56

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 11/61 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C++C  C   CP  AI+               +Y ID   C+ CG C   CP  AI +
Sbjct: 7   DSCVSCGTCAGECPVGAISAGD-----------SQYVIDADSCLDCGTCAGVCPTGAISQ 55

Query: 121 G 121
           G
Sbjct: 56  G 56


>gi|187779552|ref|ZP_02996025.1| hypothetical protein CLOSPO_03148 [Clostridium sporogenes ATCC
           15579]
 gi|187773177|gb|EDU36979.1| hypothetical protein CLOSPO_03148 [Clostridium sporogenes ATCC
           15579]
          Length = 577

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 3/68 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIE---SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
             ++CI C+ C  +C            G              I    C +CG C   CP 
Sbjct: 149 DMDKCILCRRCITMCNEVQTVGTLSAIGRGFETVVAPAFSEAIKNTNCTFCGQCVSVCPT 208

Query: 116 DAIVEGPN 123
            A+ E  N
Sbjct: 209 GALTEVNN 216


>gi|119484835|ref|ZP_01619317.1| 4Fe-4S ferredoxin, iron-sulfur binding [Lyngbya sp. PCC 8106]
 gi|119457653|gb|EAW38777.1| 4Fe-4S ferredoxin, iron-sulfur binding [Lyngbya sp. PCC 8106]
          Length = 399

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/103 (20%), Positives = 29/103 (28%), Gaps = 12/103 (11%)

Query: 21  FLCLRYFFKAKTTINYPFEKGS---TSPRFRGEHALRRYPNGEERCIACKL--CEAICPA 75
            +    + +      +P         S     +   R+       C +     CE +CPA
Sbjct: 60  MVTASNWAEPARVRGFPAVSQPLLMVSFNDGEDPHFRKAEFDSTACPSDCWRPCETVCPA 119

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            AIT         G  R          C  CG C   CP   I
Sbjct: 120 NAITFNDPVNPSIGGVRDP-------LCYGCGRCIPICPSQII 155


>gi|167040768|ref|YP_001663753.1| Fe-S cluster domain-containing protein [Thermoanaerobacter sp.
           X514]
 gi|256750978|ref|ZP_05491861.1| Fe-S cluster domain protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|300914806|ref|ZP_07132122.1| Fe-S cluster domain protein [Thermoanaerobacter sp. X561]
 gi|307723960|ref|YP_003903711.1| Fe-S cluster domain-containing protein [Thermoanaerobacter sp.
           X513]
 gi|166855008|gb|ABY93417.1| Fe-S cluster domain protein [Thermoanaerobacter sp. X514]
 gi|256750088|gb|EEU63109.1| Fe-S cluster domain protein [Thermoanaerobacter ethanolicus CCSD1]
 gi|300889741|gb|EFK84887.1| Fe-S cluster domain protein [Thermoanaerobacter sp. X561]
 gi|307581021|gb|ADN54420.1| Fe-S cluster domain protein [Thermoanaerobacter sp. X513]
          Length = 435

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 11/59 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
            ++RC  C  C   CP +AI +  G              I   +CI CG C   CP  A
Sbjct: 10  DKDRCRGCTNCIKRCPTEAIRVRDGKAM-----------IINERCIDCGECIRVCPYHA 57


>gi|77993214|dbj|BAE46794.1| bidirectional hydrogenase U subunit [Nostoc sp. PCC 7422]
          Length = 238

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 22/65 (33%), Gaps = 4/65 (6%)

Query: 59  GEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLCQEACP 114
              RC+ C  C  +C     A T +   R  +    T           C  CG C  ACP
Sbjct: 144 DHNRCVLCTRCVRVCDQIEGAHTWDMAGRGTNSHVITDLNQPWGTSDTCTSCGKCVNACP 203

Query: 115 VDAIV 119
             A+ 
Sbjct: 204 TGALF 208


>gi|89094201|ref|ZP_01167143.1| oxidoreductase, FAD/iron-sulfur cluster-binding domain protein
           [Oceanospirillum sp. MED92]
 gi|89081456|gb|EAR60686.1| oxidoreductase, FAD/iron-sulfur cluster-binding domain protein
           [Oceanospirillum sp. MED92]
          Length = 945

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 12/70 (17%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRC-----------HDGTRRTVRYDIDM-IKCIY 105
           +  ++CI C  CE +CP++ +T+    R             +       YD      C  
Sbjct: 537 DIVDQCIECGFCERMCPSRNLTLSPRQRIIGKRELALLDGENQQTFADEYDYMAIDTCAG 596

Query: 106 CGLCQEACPV 115
           CGLC   CPV
Sbjct: 597 CGLCSTVCPV 606


>gi|126464670|ref|YP_001045783.1| electron transport complex, RnfABCDGE type, C subunit [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126106481|gb|ABN79011.1| electron transport complex, RnfABCDGE type, C subunit [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 517

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 18/56 (32%), Gaps = 1/56 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
               CI C  C   CP      E   R            I ++ CI CG C   CP
Sbjct: 377 DTMPCIRCGRCAQACPVGLTPFELNARIQSEDLEGAG-RIGLLDCITCGCCSFTCP 431



 Score = 35.1 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 9/13 (69%), Positives = 10/13 (76%)

Query: 103 CIYCGLCQEACPV 115
           CI CG C +ACPV
Sbjct: 381 CIRCGRCAQACPV 393


>gi|321455606|gb|EFX66734.1| hypothetical protein DAPPUDRAFT_189585 [Daphnia pulex]
          Length = 610

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 20/56 (35%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           K C   C      +  G  C +         I    CI CG+C + CP +AI    
Sbjct: 29  KRCRQECKKSCPVVRMGKLCIEVAPTDRIAVISETLCIGCGICVKKCPFEAITIIN 84


>gi|300727612|ref|ZP_07061001.1| ferredoxin [Prevotella bryantii B14]
 gi|299775132|gb|EFI71735.1| ferredoxin [Prevotella bryantii B14]
          Length = 305

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 29/82 (35%), Gaps = 11/82 (13%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P  +         +       +    CI C  C+ +C  +AITIE+              
Sbjct: 198 PKGRRVYVQCVNKDKGAVARKSCTAACIGCGKCQKVCKFEAITIENNLSY---------- 247

Query: 97  DIDMIKCIYCGLCQEACPVDAI 118
            ID  KC  C  C + CP  AI
Sbjct: 248 -IDFNKCRMCTKCVDECPTGAI 268



 Score = 40.9 bits (94), Expect = 0.062,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 30/83 (36%), Gaps = 12/83 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI----------DMIKCIYCGL 108
            EE+C +C  C   CP     IE   +   G R  V+                 CI CG 
Sbjct: 172 DEEKCTSCGACTKACPR--HIIELRKKGPKGRRVYVQCVNKDKGAVARKSCTAACIGCGK 229

Query: 109 CQEACPVDAIVEGPNFEFATETR 131
           CQ+ C  +AI    N  +    +
Sbjct: 230 CQKVCKFEAITIENNLSYIDFNK 252


>gi|296159984|ref|ZP_06842804.1| formate dehydrogenase, alpha subunit [Burkholderia sp. Ch1-1]
 gi|295889730|gb|EFG69528.1| formate dehydrogenase, alpha subunit [Burkholderia sp. Ch1-1]
          Length = 982

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     +G         +        +C+ CG C  
Sbjct: 188 YFTYDASKCIVCNRCVRACEETQGTFALTIAGRGFESRVAASENVPFMESECVSCGACVA 247

Query: 112 ACPVDAIVE 120
           ACP   + E
Sbjct: 248 ACPTATLQE 256


>gi|258591613|emb|CBE67914.1| Formate dehydrogenase, alpha subunit (fdhA2) [NC10 bacterium 'Dutch
           sediment']
          Length = 899

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 23/87 (26%), Gaps = 6/87 (6%)

Query: 38  FEKGSTSPRFRGEHA---LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
           F++       R          +    + CI C  C   C                  +  
Sbjct: 120 FQRRHMPTLSRHTPVDESKSFFILDRDACILCGRCTVACDDVQQIGAIALLGRSSATKVG 179

Query: 95  RYD---IDMIKCIYCGLCQEACPVDAI 118
            +    +    C  CG C  ACP  AI
Sbjct: 180 VFSDGSLASSVCTSCGQCVAACPTGAI 206


>gi|291278902|ref|YP_003495737.1| electron transport complex protein RnfC [Deferribacter
           desulfuricans SSM1]
 gi|290753604|dbj|BAI79981.1| electron transport complex protein RnfC [Deferribacter
           desulfuricans SSM1]
          Length = 435

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 17/56 (30%), Gaps = 1/56 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
               CI C  C   CP   +         +     +     +  CI CG C   CP
Sbjct: 353 NMHNCIRCGRCVEACPMGLVPAIMEQFALNEMYERLNEWHVLN-CIECGCCSYVCP 407



 Score = 37.0 bits (84), Expect = 0.94,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 3/28 (10%)

Query: 97  DIDMIKCIYCGLCQEACP---VDAIVEG 121
           +++M  CI CG C EACP   V AI+E 
Sbjct: 351 NLNMHNCIRCGRCVEACPMGLVPAIMEQ 378


>gi|284163487|ref|YP_003401766.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haloterrigena
           turkmenica DSM 5511]
 gi|284013142|gb|ADB59093.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haloterrigena
           turkmenica DSM 5511]
          Length = 107

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 2/65 (3%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                  + CIA   C   CP         P   +   +    +    +CI C LC + C
Sbjct: 37  THVAVDFDLCIADGACLEDCPVDVFEWVETPGHPESEEKADPAN--EAQCIDCMLCVDVC 94

Query: 114 PVDAI 118
           PVDAI
Sbjct: 95  PVDAI 99


>gi|289192279|ref|YP_003458220.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
 gi|288938729|gb|ADC69484.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus sp. FS406-22]
          Length = 82

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 24/68 (35%), Gaps = 7/68 (10%)

Query: 60  EERCIACKLCEAICPAQAITIES-------GPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
            ERC  C  C   CP  A   E+                      ++   C  CG C EA
Sbjct: 10  PERCHGCGNCVIACPVNAKHPETWGGKGPYSDDVVIRVENGTVTVVNQDLCGGCGACIEA 69

Query: 113 CPVDAIVE 120
           CPV+AI  
Sbjct: 70  CPVNAIEL 77


>gi|260437855|ref|ZP_05791671.1| conserved domain protein [Butyrivibrio crossotus DSM 2876]
 gi|292809880|gb|EFF69085.1| conserved domain protein [Butyrivibrio crossotus DSM 2876]
          Length = 56

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 11/58 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C++C  C   CPA AI++               Y+ID   C+ CG C+ ACPV AI
Sbjct: 7   DSCVSCGSCAGGCPAGAISLGD-----------SHYEIDADTCLSCGACESACPVGAI 53


>gi|288573731|ref|ZP_06392088.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dethiosulfovibrio peptidovorans DSM 11002]
 gi|288569472|gb|EFC91029.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Dethiosulfovibrio peptidovorans DSM 11002]
          Length = 365

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 1/58 (1%)

Query: 61  ERCIACKLC-EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           ++C+ C +C +    +  +    G       +  V  D    +C  CG C   CPV A
Sbjct: 16  DKCVDCGMCLKGCIMSDQLEEGPGKVVSHFLKNGVIEDDWPFRCSLCGYCSSVCPVGA 73


>gi|226949091|ref|YP_002804182.1| iron hydrogenase 1 [Clostridium botulinum A2 str. Kyoto]
 gi|226843824|gb|ACO86490.1| iron hydrogenase 1 [Clostridium botulinum A2 str. Kyoto]
          Length = 577

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 3/68 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIE---SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
             ++CI C+ C  +C            G              I    C +CG C   CP 
Sbjct: 149 DMDKCILCRRCITMCNEVQTVGTLSAIGRGFETVVAPAFSEAIKNTNCTFCGQCVSVCPT 208

Query: 116 DAIVEGPN 123
            A+ E  N
Sbjct: 209 GALTEVNN 216


>gi|209809816|ref|YP_002265355.1| putative 4Fe-4S ferredoxin, iron-sulfur binding [Aliivibrio
           salmonicida LFI1238]
 gi|208011379|emb|CAQ81838.1| putative 4Fe-4S ferredoxin, iron-sulfur binding [Aliivibrio
           salmonicida LFI1238]
          Length = 303

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 28/94 (29%), Gaps = 20/94 (21%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
             P+    C  C  C   CP  A+T +  P              +   C  C  C + CP
Sbjct: 51  HNPHTINHCDHCGDCVEPCPTGALTFDDSPSRKVIW--------NEALCTQCDKCIDVCP 102

Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLNNGDRW 148
                       +    +   Y  E+LL    ++
Sbjct: 103 ------------SKSNPKITTYSVEKLLELTKKY 124


>gi|254452317|ref|ZP_05065754.1| dihydroorotate dehydrogenase family protein [Octadecabacter
           antarcticus 238]
 gi|198266723|gb|EDY90993.1| dihydroorotate dehydrogenase family protein [Octadecabacter
           antarcticus 238]
          Length = 434

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 8/82 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117
            ++ CI+C  C A C       E              + +   +C+ C LC + CPV D 
Sbjct: 343 NQDDCISCGRCYAAC-------EDTSHQAIAMSEDRTFSVIDAECVACNLCVDVCPVEDC 395

Query: 118 IVEGPNFEFATETRQELYYDKE 139
           I         T+ R      KE
Sbjct: 396 ITMVALAPGTTDPRTGKVVQKE 417


>gi|170754223|ref|YP_001781834.1| iron-sulfur binding protein [Clostridium botulinum B1 str. Okra]
 gi|169119435|gb|ACA43271.1| CobQ/CobB/MinD/ParA family protein [Clostridium botulinum B1 str.
           Okra]
          Length = 281

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 22/65 (33%), Gaps = 15/65 (23%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ CI C  CE +C   AI                   ID   C  CG C   CP +AI
Sbjct: 63  DEDICIKCTECELVCKFDAIKNLK---------------IDPFLCEGCGACTLICPQNAI 107

Query: 119 VEGPN 123
                
Sbjct: 108 KLEDE 112


>gi|168232096|ref|ZP_02657154.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|194472499|ref|ZP_03078483.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194458863|gb|EDX47702.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|205333575|gb|EDZ20339.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
          Length = 287

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 21/73 (28%), Gaps = 11/73 (15%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            + C  C  C   CP   I  +                I   +C  CG C   CP  A+ 
Sbjct: 190 PQECRMCGACWRSCPENVIQFDDN-----------TLTIVAARCTGCGGCAAVCPHQALR 238

Query: 120 EGPNFEFATETRQ 132
              + E  +    
Sbjct: 239 LRFDVEPTSTRHS 251



 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 11/50 (22%)

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  +CPAQA ++  G              ID  +CI CG C   CPVDAI
Sbjct: 29  CADVCPAQAFSLAQGQVS-----------IDTTRCIACGDCLFVCPVDAI 67


>gi|154496500|ref|ZP_02035196.1| hypothetical protein BACCAP_00792 [Bacteroides capillosus ATCC
           29799]
 gi|150274133|gb|EDN01224.1| hypothetical protein BACCAP_00792 [Bacteroides capillosus ATCC
           29799]
          Length = 214

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 12/63 (19%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           Y    E+CI C+ C ++CP   I+              +  +ID   C++CG C   CPV
Sbjct: 153 YRIIPEKCIGCQGCRSVCPVNCISGT------------IPRNIDTAHCLHCGNCLSICPV 200

Query: 116 DAI 118
            A+
Sbjct: 201 GAV 203



 Score = 38.5 bits (88), Expect = 0.32,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 13/26 (50%)

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEG 121
           Y I   KCI C  C+  CPV+ I   
Sbjct: 153 YRIIPEKCIGCQGCRSVCPVNCISGT 178


>gi|147918951|ref|YP_687323.1| heterodisulfide reductase, subunit A [uncultured methanogenic
           archaeon RC-I]
 gi|110622719|emb|CAJ37997.1| heterodisulfide reductase, subunit A [uncultured methanogenic
           archaeon RC-I]
          Length = 657

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 12/89 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            EE C  C +CE  CP +AIT+        G R+    D     C  CG C  +CP  AI
Sbjct: 581 NEEICAGCGVCERQCPYKAITML---NLEGGVRKANVND---AMCKGCGTCGGSCPGGAI 634

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDR 147
                      T  +L    + LL  G++
Sbjct: 635 KMQH------FTTPQLIAQIDALLLGGEQ 657


>gi|332157995|ref|YP_004423274.1| ferredoxin [Pyrococcus sp. NA2]
 gi|331033458|gb|AEC51270.1| ferredoxin [Pyrococcus sp. NA2]
          Length = 168

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 35/99 (35%), Gaps = 13/99 (13%)

Query: 24  LRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG 83
           LR+ F    T+   F         R        P   +R I C  C+ +CP  AI +E+ 
Sbjct: 8   LRHGF---ITVEELFSIIPKPSEERLRKGPVAIPECPQR-IPCTPCKEVCPTNAIKMETP 63

Query: 84  PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                         +D  KCI C LC + CP  A     
Sbjct: 64  NDIPI---------VDYEKCIGCSLCVQICPGLAFFMVH 93


>gi|320355222|ref|YP_004196561.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Desulfobulbus propionicus DSM 2032]
 gi|320123724|gb|ADW19270.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfobulbus propionicus DSM 2032]
          Length = 243

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/100 (24%), Positives = 28/100 (28%), Gaps = 17/100 (17%)

Query: 27  FFKAKTTI-NYPFEKGSTSPRFRGEHALRRYPN----GEERCIACKLCEAICPAQAITIE 81
             K   T  N P E       F  +    R        E  C  C  C  +CP  AI  E
Sbjct: 153 ILKKIQTASNIPNEPLYVPGNFPYKEVQMRASIAPSVNEALCSRCGECALVCPTGAIDRE 212

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           +                    CI C  C + CP  A   G
Sbjct: 213 NPVSTSK------------ELCIRCCACVKTCPNGAKAFG 240


>gi|301062088|ref|ZP_07202789.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit A family
            protein [delta proteobacterium NaphS2]
 gi|300443814|gb|EFK07878.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit A family
            protein [delta proteobacterium NaphS2]
          Length = 1394

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 30/86 (34%), Gaps = 18/86 (20%)

Query: 59   GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +E+C AC +C   CP     I +               ID   C  CG+C   CP   I
Sbjct: 1323 DQEKCAACLVCVRSCPYNVPKINADGVSE----------IDPALCRGCGICVSECPAKVI 1372

Query: 119  VEGPNFEFATETRQELYYDK-ERLLN 143
              G  +E       +    K E LL 
Sbjct: 1373 QLGW-YE------DDQVMSKVEALLE 1391



 Score = 34.3 bits (77), Expect = 5.7,   Method: Composition-based stats.
 Identities = 10/18 (55%), Positives = 11/18 (61%)

Query: 98  IDMIKCIYCGLCQEACPV 115
           ID  KC  CG C + CPV
Sbjct: 19  IDESKCTACGDCTDVCPV 36


>gi|307730641|ref|YP_003907865.1| formate dehydrogenase subunit alpha [Burkholderia sp. CCGE1003]
 gi|307585176|gb|ADN58574.1| formate dehydrogenase, alpha subunit [Burkholderia sp. CCGE1003]
          Length = 981

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     +G         +        +C+ CG C  
Sbjct: 187 YFTYDPAKCIVCNRCVRACEETQGTFALTIAGRGFESRVAASENQPFMESECVSCGACVA 246

Query: 112 ACPVDAIVE 120
           ACP   + E
Sbjct: 247 ACPTATLQE 255


>gi|258406084|ref|YP_003198826.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfohalobium
           retbaense DSM 5692]
 gi|257798311|gb|ACV69248.1| quinone-interacting membrane-bound oxidoreductase, subunit B
           [Desulfohalobium retbaense DSM 5692]
          Length = 766

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 22/70 (31%), Gaps = 10/70 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +        RC  CK C   CP  A+  +                 ++ +C  CG C  A
Sbjct: 549 MTYPIFNFTRCTQCKRCTEECPFGALDDDEKGTPLP----------NLARCRRCGTCMGA 598

Query: 113 CPVDAIVEGP 122
           CP   I    
Sbjct: 599 CPERVISFDN 608


>gi|219850873|ref|YP_002465305.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Methanosphaerula palustris E1-9c]
 gi|219545132|gb|ACL15582.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Methanosphaerula palustris E1-9c]
          Length = 417

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 25/75 (33%), Gaps = 9/75 (12%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH---------DGTRRTVRYDID 99
           G+  L +      RCI C  C   CP       S  +                 +R+   
Sbjct: 279 GKERLDKILKETSRCIKCYQCIDQCPICYCVECSTKKPELVAPGVLPVPFMFHLIRFAHI 338

Query: 100 MIKCIYCGLCQEACP 114
              C+ CG C+E CP
Sbjct: 339 ADSCVNCGQCEEICP 353


>gi|161612713|ref|YP_001586678.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|161362077|gb|ABX65845.1| hypothetical protein SPAB_00411 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 287

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 21/68 (30%), Gaps = 11/68 (16%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            + C  C  C   CP   I  +                I   +C  CG C   CP  A+ 
Sbjct: 190 PQECRMCGACWRSCPENVIQFDDN-----------TLTIAAARCTGCGGCAAVCPHQALR 238

Query: 120 EGPNFEFA 127
              + E A
Sbjct: 239 LRFDVEPA 246



 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 11/50 (22%)

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  +CPAQA ++  G              ID  +CI CG C   CPVDAI
Sbjct: 29  CADVCPAQAFSLAKGQVS-----------IDTTRCIACGDCLFVCPVDAI 67


>gi|33333732|gb|AAQ11981.1| dihydropyrimidine dehydrogenase [Dictyostelium discoideum]
          Length = 1009

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 19/75 (25%), Gaps = 8/75 (10%)

Query: 59   GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117
             E++CI C  C   C                        +    C  C LC   CPV   
Sbjct: 937  DEDKCINCGKCYMTCN-------DSGYQAIKFDGKTHIPLVTDLCTGCDLCLSVCPVPDC 989

Query: 118  IVEGPNFEFATETRQ 132
            I   P        R 
Sbjct: 990  ITMVPRETIYVPDRG 1004


>gi|146279224|ref|YP_001169382.1| respiratory-chain NADH dehydrogenase domain-containing protein
           [Rhodobacter sphaeroides ATCC 17025]
 gi|145557465|gb|ABP72077.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
           [Rhodobacter sphaeroides ATCC 17025]
          Length = 188

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 10/58 (17%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C  C  C   CP  AI   +             + +    CI C  C EACP +AI
Sbjct: 111 DHCTGCMRCFKRCPTDAIIGANKQ----------IHTVVTDACIGCNACIEACPTEAI 158


>gi|332298930|ref|YP_004440852.1| Fe-S cluster domain protein [Treponema brennaborense DSM 12168]
 gi|332182033|gb|AEE17721.1| Fe-S cluster domain protein [Treponema brennaborense DSM 12168]
          Length = 584

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/74 (25%), Positives = 25/74 (33%), Gaps = 11/74 (14%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
            + L      +  C  C  C   CP +AI +E+G              I    CI CG C
Sbjct: 1   MNFLYPVYTEQTECQDCYKCIRRCPVKAIRVENG-----------HAKIISELCIVCGRC 49

Query: 110 QEACPVDAIVEGPN 123
              CP  A     +
Sbjct: 50  VINCPAHAKRSRDD 63


>gi|330835447|ref|YP_004410175.1| putative pyruvate: ferredoxin oxidoreductase, delta subunit
           [Metallosphaera cuprina Ar-4]
 gi|329567586|gb|AEB95691.1| putative pyruvate: ferredoxin oxidoreductase, delta subunit
           [Metallosphaera cuprina Ar-4]
          Length = 88

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 27/75 (36%), Gaps = 10/75 (13%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G   + +     E+C  C+LC   C    I +E                ID   C  CG+
Sbjct: 22  GTWRILKPVIHYEKCTRCRLCYFYCVENTIDLEKNLYPV----------IDYDYCKGCGV 71

Query: 109 CQEACPVDAIVEGPN 123
           C + CPV AI     
Sbjct: 72  CAQVCPVAAIEMIKE 86


>gi|310658064|ref|YP_003935785.1| pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta
           [Clostridium sticklandii DSM 519]
 gi|308824842|emb|CBH20880.1| Pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           (modular protein) [Clostridium sticklandii]
          Length = 86

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 10/65 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++ C+ C +C + CP  +IT            +   Y ID   C  CG+C   CP  AI
Sbjct: 30  NKDNCVECGICMSFCPVGSITGN----------KQKIYAIDYKFCKGCGICAYECPSKAI 79

Query: 119 VEGPN 123
                
Sbjct: 80  DMVKE 84


>gi|239904886|ref|YP_002951624.1| NADH-quinone oxidoreductase chain F [Desulfovibrio magneticus RS-1]
 gi|239794749|dbj|BAH73738.1| NADH-quinone oxidoreductase chain F [Desulfovibrio magneticus RS-1]
          Length = 490

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 16/44 (36%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            +             + Y I+  KC  C LC + CPV+ I    
Sbjct: 418 HVTQKKCPAHVCTAMLTYTINPAKCTGCTLCTKVCPVECISGTK 461



 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 10/67 (14%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           A+  Y     +C  C LC  +CP + I+                + ID  KCI CG C +
Sbjct: 431 AMLTYTINPAKCTGCTLCTKVCPVECISGTKKQP----------HVIDASKCIKCGACYD 480

Query: 112 ACPVDAI 118
            C  D+I
Sbjct: 481 KCKFDSI 487


>gi|226326553|ref|ZP_03802071.1| hypothetical protein PROPEN_00403 [Proteus penneri ATCC 35198]
 gi|225204978|gb|EEG87332.1| hypothetical protein PROPEN_00403 [Proteus penneri ATCC 35198]
          Length = 316

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 5/54 (9%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
            ++C+ C  C  +CPA    + +        R     D     CI C  C+E C
Sbjct: 57  HDKCVDCGKCVDVCPAGVHYMTTNENGKQVHRVDRGVD-----CIGCRKCEEVC 105



 Score = 35.1 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 13/48 (27%)

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                       +G     +      KC+ CG C + CP        N
Sbjct: 33  GCNIRCPWCSNPEGLSSEFQVMYSHDKCVDCGKCVDVCPAGVHYMTTN 80


>gi|218265299|ref|ZP_03478757.1| hypothetical protein PRABACTJOHN_04467 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221524|gb|EEC94174.1| hypothetical protein PRABACTJOHN_04467 [Parabacteroides johnsonii
           DSM 18315]
          Length = 252

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 30/87 (34%), Gaps = 11/87 (12%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
             KG+   + +G    +     E+ C  C+ C  +CP  AI+I       D         
Sbjct: 159 EMKGNFPYKVKGPSTPQAPVTDEDLCTQCEYCIDVCPVSAISIVDDRMFSD--------- 209

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNF 124
                CI C  C + CP  A      +
Sbjct: 210 --PATCIKCCACVKECPEGARTFDTPY 234



 Score = 35.1 bits (79), Expect = 3.1,   Method: Composition-based stats.
 Identities = 9/29 (31%), Positives = 12/29 (41%)

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
              C  C  C + CPV AI    +  F+ 
Sbjct: 181 EDLCTQCEYCIDVCPVSAISIVDDRMFSD 209


>gi|148380175|ref|YP_001254716.1| 4Fe-4S cluster containing ParA family ATPase protein [Clostridium
           botulinum A str. ATCC 3502]
 gi|153934264|ref|YP_001384474.1| iron-sulfur binding protein [Clostridium botulinum A str. ATCC
           19397]
 gi|153936550|ref|YP_001387990.1| iron-sulfur binding protein [Clostridium botulinum A str. Hall]
 gi|148289659|emb|CAL83763.1| 4Fe-4S cluster containing ParA family ATPase protein [Clostridium
           botulinum A str. ATCC 3502]
 gi|152930308|gb|ABS35808.1| CobQ/CobB/MinD/ParA family protein [Clostridium botulinum A str.
           ATCC 19397]
 gi|152932464|gb|ABS37963.1| CobQ/CobB/MinD/ParA family protein [Clostridium botulinum A str.
           Hall]
          Length = 281

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 22/65 (33%), Gaps = 15/65 (23%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ CI C  CE +C   AI                   ID   C  CG C   CP +AI
Sbjct: 63  DEDICIKCTECELVCKFDAIKNLK---------------IDPFLCEGCGACTLICPQNAI 107

Query: 119 VEGPN 123
                
Sbjct: 108 KLEDE 112


>gi|197117834|ref|YP_002138261.1| polyferredoxin benzoyl-CoA reductase electron transfer protein
           [Geobacter bemidjiensis Bem]
 gi|197087194|gb|ACH38465.1| polyferredoxin, putative benzoyl-CoA reductase electron transfer
           protein [Geobacter bemidjiensis Bem]
          Length = 1012

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 7/64 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  C++C  C   C   AI+    P+            ++ I C   GLC   CP  AI
Sbjct: 941 NENNCVSCGACITACKYGAISFVDTPKGKKAH-------VEPILCKGDGLCNAKCPTQAI 993

Query: 119 VEGP 122
               
Sbjct: 994 YLKH 997



 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 49/157 (31%), Gaps = 39/157 (24%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITI-------ESGPRCHDGTRRTVRYDI 98
            F+     +     EE+C  C +C   CP +                 +      +   +
Sbjct: 94  DFKVTLTKKPRYISEEKCTGCNICVDYCPVKIPDPFNQNLSENKAVHIYFSQAVPLVTYV 153

Query: 99  DMIKCIY-----CGLCQEACPVDAIVEGPNFE--------------FATET---RQELYY 136
           D   C+Y     C +C  AC  +AI      E              ++T     R +  Y
Sbjct: 154 DPETCLYLKEGKCQICVGACKTNAIDLHQKPETFQIEVGAIILSPGYSTFDPKLRNDFGY 213

Query: 137 DK----------ERLLNNGDRWESEIVRNIVTDSPYR 163
            K          ER+L     +E E++R      P++
Sbjct: 214 GKMQNVVTSLDFERILCATGPYEGEVLRPSDKKHPHK 250


>gi|77918997|ref|YP_356812.1| glycerol dehydratase activating enzyme [Pelobacter carbinolicus DSM
           2380]
 gi|77545080|gb|ABA88642.1| glycerol dehydratase, cobalamin-independent, small subunit
           [Pelobacter carbinolicus DSM 2380]
          Length = 322

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 22/64 (34%), Gaps = 8/64 (12%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             CI C  C  +C A AI  +                ID  +C  CG C + C   AI  
Sbjct: 71  NNCIGCGKCLEVCKAGAIRKDETGAKGL--------IIDRDRCTLCGQCAKFCYAGAINI 122

Query: 121 GPNF 124
              +
Sbjct: 123 IGRY 126


>gi|15668900|ref|NP_247704.1| putative ATPase RIL [Methanocaldococcus jannaschii DSM 2661]
 gi|2492577|sp|Q58129|Y719_METJA RecName: Full=Uncharacterized ABC transporter ATP-binding protein
           MJ0719
 gi|1591435|gb|AAB98713.1| RNase L inhibitor [Methanocaldococcus jannaschii DSM 2661]
          Length = 600

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 1/70 (1%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G   +R      +RC   K C   C      +  G +  +    T +  I  + C  CG+
Sbjct: 9   GGDFMRLAIIDYDRCQP-KKCSMECMKYCPGVRMGEKTIEIDENTGKPVISEVLCSGCGI 67

Query: 109 CQEACPVDAI 118
           C + CP  AI
Sbjct: 68  CVKRCPFKAI 77


>gi|119355969|ref|YP_910613.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Chlorobium phaeobacteroides DSM 266]
 gi|119353318|gb|ABL64189.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Chlorobium
           phaeobacteroides DSM 266]
          Length = 517

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 31/85 (36%), Gaps = 16/85 (18%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           EKGS     R    LR     E  C+      AICP +A+            R       
Sbjct: 41  EKGSFPETRRYFTVLRCNHCAEPPCV------AICPVEALQKREDGIVDFDGR------- 87

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPN 123
              +CI C  C +ACP +A+   P 
Sbjct: 88  ---RCIGCKACAQACPYNALYIDPE 109



 Score = 41.2 bits (95), Expect = 0.044,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 26/79 (32%), Gaps = 22/79 (27%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG---------LC 109
              RCI CK C   CP  A+ I+                    KC YC           C
Sbjct: 85  DGRRCIGCKACAQACPYNALYIDPE-------------THTSAKCNYCAHRKEVGLQPAC 131

Query: 110 QEACPVDAIVEGPNFEFAT 128
              CP  AIV G   + ++
Sbjct: 132 VAICPQQAIVSGDLDDPSS 150



 Score = 40.5 bits (93), Expect = 0.087,   Method: Composition-based stats.
 Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 17/91 (18%)

Query: 56  YPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTRRTVRYDIDMIKCIYCGL-- 108
           +     +CI C  C   C ++                 G+    R    +++C +C    
Sbjct: 5   FVIDARKCIGCHACTVACKSENQVPLGVNRTWVKYVEKGSFPETRRYFTVLRCNHCAEPP 64

Query: 109 CQEACPVDAIVEGPNFEFATETRQELYYDKE 139
           C   CPV+A+            R++   D +
Sbjct: 65  CVAICPVEALQ----------KREDGIVDFD 85


>gi|134295063|ref|YP_001118798.1| formate dehydrogenase subunit alpha [Burkholderia vietnamiensis G4]
 gi|134138220|gb|ABO53963.1| formate dehydrogenase alpha subunit [Burkholderia vietnamiensis G4]
          Length = 983

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 23/76 (30%), Gaps = 3/76 (3%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCI 104
           R + +   +     +CI C  C   C     T     +                   +C+
Sbjct: 180 RKDESNPYFTYDPSKCIVCNRCVRACEETQGTFALTIAARGFESRVAAGASESFMASECV 239

Query: 105 YCGLCQEACPVDAIVE 120
            CG C  ACP   + E
Sbjct: 240 SCGACVAACPTATLQE 255


>gi|325957922|ref|YP_004289388.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
 gi|325329354|gb|ADZ08416.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanobacterium sp. AL-21]
          Length = 658

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 11/64 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ C  C++C  +CP  A+                   I++  C  CG C  ACP  A+
Sbjct: 588 DEDVCGGCEVCIDLCPYGAVERIDEKAH-----------INVALCKGCGTCVGACPSGAL 636

Query: 119 VEGP 122
            +  
Sbjct: 637 DQQH 640



 Score = 39.3 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 24/87 (27%), Gaps = 7/87 (8%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR-------CHDGTRRTVRYDI 98
            F+     +     E  C  C  C  +CP +                        +   I
Sbjct: 238 NFKVTVEKKPRYIDESVCTGCGSCTEVCPIEIPNYFDEGVGMVKATYIPFPQAVPLCATI 297

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFE 125
           D   CI C LC + C   AI      E
Sbjct: 298 DKDYCIECKLCDQVCGNGAIKHDQEPE 324


>gi|315638317|ref|ZP_07893498.1| iron-sulfur cluster binding protein [Campylobacter upsaliensis
           JV21]
 gi|315481664|gb|EFU72287.1| iron-sulfur cluster binding protein [Campylobacter upsaliensis
           JV21]
          Length = 473

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/88 (19%), Positives = 21/88 (23%), Gaps = 10/88 (11%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ----------AITIESGPRCH 87
                     R +    +      RCI C  C   CP                  G    
Sbjct: 283 EVHIVLFDHHRSDMLAHKDYYEALRCIRCGACMNFCPVYDKIGGHSYQTIYPGPIGEVIS 342

Query: 88  DGTRRTVRYDIDMIKCIYCGLCQEACPV 115
                  +    +  C  CG C E CPV
Sbjct: 343 PNLFGMDQTGDILNFCSLCGRCSEVCPV 370


>gi|307211114|gb|EFN87340.1| ATP-binding cassette sub-family E member 1 [Harpegnathos saltator]
          Length = 608

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 21/56 (37%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           K C   C      +  G  C +    +    I    CI CG+C + CP +AI    
Sbjct: 27  KRCRQECKRSCPVVRMGKLCIEVNPNSKIASISEELCIGCGICVKKCPFEAISIIN 82


>gi|260221131|emb|CBA29389.1| Electron transport complex protein rnfB [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 229

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 10/78 (12%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
             +P F  E         E+ CI C LC   CP  AI          G+ + +   I+  
Sbjct: 70  PLNPEFGLEAPRTVVFIDEDWCIGCTLCIKACPTDAI---------IGSNKRMHTVIEP- 119

Query: 102 KCIYCGLCQEACPVDAIV 119
            C  C LC   CPVD I+
Sbjct: 120 HCTGCELCLPVCPVDCIM 137



 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 15/29 (51%)

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
               ID   CI C LC +ACP DAI+   
Sbjct: 82  TVVFIDEDWCIGCTLCIKACPTDAIIGSN 110


>gi|257437704|ref|ZP_05613459.1| conserved domain protein [Faecalibacterium prausnitzii A2-165]
 gi|257200011|gb|EEU98295.1| conserved domain protein [Faecalibacterium prausnitzii A2-165]
          Length = 56

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 11/64 (17%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + C+ C  CE  CP  A+TIE+G              ++   CI CG C+ ACP
Sbjct: 1   MAHKVSDACVGCGACEGACPVGAVTIENGVAV-----------VNADACIDCGACEGACP 49

Query: 115 VDAI 118
             AI
Sbjct: 50  TGAI 53


>gi|291288299|ref|YP_003505115.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290885459|gb|ADD69159.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 55

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 25/64 (39%), Gaps = 11/64 (17%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + C  C +CE  CP  AI+     R            ID   C  CG C E CP
Sbjct: 1   MAYTINDSCTNCGVCEDECPVGAISEGDDVRV-----------IDADTCTDCGACAEVCP 49

Query: 115 VDAI 118
           VDAI
Sbjct: 50  VDAI 53


>gi|218780439|ref|YP_002431757.1| electron transport complex, RnfABCDGE type, B subunit
           [Desulfatibacillum alkenivorans AK-01]
 gi|218761823|gb|ACL04289.1| Putative electron transport complex, RnfB protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 672

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 18/66 (27%), Gaps = 10/66 (15%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
                  C+    C   CP  A+ +                 +   KC  CG C+  CP 
Sbjct: 131 MKECTVGCLGLGSCVKACPFGALEMGEDGLP----------RVIAEKCTGCGTCERVCPK 180

Query: 116 DAIVEG 121
             I   
Sbjct: 181 GIINMS 186


>gi|219127698|ref|XP_002184067.1| phosphatase [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217404298|gb|EEC44245.1| phosphatase [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 623

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 24/52 (46%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           K C   C      ++ G  C + T ++    I    CI CG+C + CP +AI
Sbjct: 13  KKCRQECKKSCPVVKLGKLCIEVTPKSKLAFISEPLCIGCGICVKKCPFEAI 64


>gi|213622070|ref|ZP_03374853.1| putative polyferredoxin [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
          Length = 176

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 22/73 (30%), Gaps = 11/73 (15%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            + C  C  C   CP   I  +                I   +C  CG C   CP  A+ 
Sbjct: 79  PQECRMCGACWRSCPENVIQFDDD-----------TLTIAAARCTGCGGCAAVCPHQALR 127

Query: 120 EGPNFEFATETRQ 132
              + E A+    
Sbjct: 128 LRFDVEPASTRHS 140


>gi|218781978|ref|YP_002433296.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218763362|gb|ACL05828.1| Pyruvate-ferredoxin oxidoreductase, alpha subunit
           [Desulfatibacillum alkenivorans AK-01]
          Length = 1173

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 28/91 (30%), Gaps = 18/91 (19%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV------------- 94
            A+       + CI C  C  +CP  AI         +                      
Sbjct: 675 VAIEVPEWIMDNCIQCNQCSFVCPHAAIRPFLLTEEEKSEAPDSFETLEAKGKGFDGLSF 734

Query: 95  RYDIDMIKCIYCGLCQEACP--VDAIVEGPN 123
           R  ++ + C  CG C + CP    A+V  P 
Sbjct: 735 RIQVNTLDCQGCGNCADICPAKEKALVMRPI 765



 Score = 34.3 bits (77), Expect = 5.2,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 17/60 (28%), Gaps = 13/60 (21%)

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
           M  CI C  C   CP  AI                   +E      D +E+   +    D
Sbjct: 684 MDNCIQCNQCSFVCPHAAIRP-------------FLLTEEEKSEAPDSFETLEAKGKGFD 730


>gi|153814772|ref|ZP_01967440.1| hypothetical protein RUMTOR_00987 [Ruminococcus torques ATCC 27756]
 gi|317501321|ref|ZP_07959524.1| hypothetical protein HMPREF1026_01467 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|331088354|ref|ZP_08337273.1| hypothetical protein HMPREF1025_00856 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847803|gb|EDK24721.1| hypothetical protein RUMTOR_00987 [Ruminococcus torques ATCC 27756]
 gi|316897285|gb|EFV19353.1| hypothetical protein HMPREF1026_01467 [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|330408598|gb|EGG88064.1| hypothetical protein HMPREF1025_00856 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 204

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 11/58 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + CI CKLC ++CP + I I S P             I+   C++CG C E CP   I
Sbjct: 152 KECIGCKLCYSVCPQKCIDISSVPV-----------TINQNHCLHCGRCAEICPKQCI 198


>gi|91203437|emb|CAJ71090.1| similar to NAD(P) oxidoreductase, FAD-containing subunit
           [Candidatus Kuenenia stuttgartiensis]
          Length = 700

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 24/89 (26%), Gaps = 10/89 (11%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                R  +        E  C+ C  C  +CP       +G                   
Sbjct: 478 VREAQRCMNCGAGAYVDEHLCVGCITCVRVCPFDVPEFRNGEITAY----------IGGD 527

Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETR 131
           C  CGLC   CP  AI      E +   R
Sbjct: 528 CQSCGLCIVECPAKAIRFKTPLEDSGRER 556


>gi|70607960|ref|YP_256830.1| pyruvate synthase delta chain [Sulfolobus acidocaldarius DSM 639]
 gi|68568608|gb|AAY81537.1| pyruvate synthase delta chain [Sulfolobus acidocaldarius DSM 639]
          Length = 88

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 26/75 (34%), Gaps = 11/75 (14%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G   + +      +CI CK C   CP   I  + G              +D   C  CG+
Sbjct: 24  GSWRVVKPVVDLSKCIGCKACFMFCPESTIVPKGGKV-----------TVDYEYCKGCGV 72

Query: 109 CQEACPVDAIVEGPN 123
           C   CPV AI     
Sbjct: 73  CSNVCPVKAISMVSE 87


>gi|242399356|ref|YP_002994780.1| Pyruvate:ferredoxin oxidoreductase (POR), subunit delta
           [Thermococcus sibiricus MM 739]
 gi|242265749|gb|ACS90431.1| Pyruvate:ferredoxin oxidoreductase (POR), subunit delta
           [Thermococcus sibiricus MM 739]
          Length = 105

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 10/75 (13%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G   +      +++CI C +C  +CP  AI ++                 D   C  CG+
Sbjct: 39  GGWRVFMPKFDKDKCIRCFICYTLCPEPAIYLDEESYPVF----------DYDYCKGCGI 88

Query: 109 CQEACPVDAIVEGPN 123
           C   CP  AI     
Sbjct: 89  CANECPTKAIEMVRE 103


>gi|239623412|ref|ZP_04666443.1| 4Fe-4S ferredoxin [Clostridiales bacterium 1_7_47_FAA]
 gi|239522378|gb|EEQ62244.1| 4Fe-4S ferredoxin [Clostridiales bacterium 1_7_47FAA]
          Length = 241

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 14/79 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC--QEACPVD 116
            +E+CI C  C   C    IT +                I+  +C+ CG+C     C  D
Sbjct: 6   NKEKCIGCGRCTDYCMLGCITRDGKKVS-----------INEEECVDCGVCLRAGVCAAD 54

Query: 117 AIVEGP-NFEFATETRQEL 134
           AI     NFE+    R + 
Sbjct: 55  AIYMPDENFEYPRAVRMQF 73


>gi|124485356|ref|YP_001029972.1| hypothetical protein Mlab_0531 [Methanocorpusculum labreanum Z]
 gi|124362897|gb|ABN06705.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methanocorpusculum labreanum Z]
          Length = 367

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 11/60 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ++CI C  C   CP   I+I                 ID+  CI C +C   CP  AI  
Sbjct: 192 DKCIVCGACMNACPEFCISIAGKAVS-----------IDLDHCIGCLMCMNTCPEHAIDL 240



 Score = 38.5 bits (88), Expect = 0.31,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 13/27 (48%)

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAI 118
            T R  I   KCI CG C  ACP   I
Sbjct: 183 HTTRPMILEDKCIVCGACMNACPEFCI 209


>gi|94265660|ref|ZP_01289401.1| Nitroreductase:4Fe-4S ferredoxin, iron-sulfur binding [delta
           proteobacterium MLMS-1]
 gi|93453831|gb|EAT04197.1| Nitroreductase:4Fe-4S ferredoxin, iron-sulfur binding [delta
           proteobacterium MLMS-1]
          Length = 273

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 11/66 (16%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +  +   +ERCI C  C   CP   IT++  P+  +              CI C  C   
Sbjct: 1   MLNFRVDQERCIQCGECAQDCPTGVITLDDYPQISN-----------EAGCIQCQHCLAI 49

Query: 113 CPVDAI 118
           CP  A+
Sbjct: 50  CPTAAL 55



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 14/30 (46%)

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            + + +D  +CI CG C + CP   I    
Sbjct: 1   MLNFRVDQERCIQCGECAQDCPTGVITLDD 30


>gi|2828296|emb|CAA16710.1| RNase L inhibitor-like protein [Arabidopsis thaliana]
 gi|7268716|emb|CAB78923.1| RNase L inhibitor-like protein [Arabidopsis thaliana]
          Length = 600

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           K C   C      +++G  C + T  +    I    CI CG+C + CP +AI    
Sbjct: 19  KKCRQECKKSCPVVKTGKLCIEVTVGSKLAFISEELCIGCGICVKKCPFEAIQIIN 74


>gi|91784828|ref|YP_560034.1| NAD-dependent formate dehydrogenase, alpha subunit [Burkholderia
           xenovorans LB400]
 gi|91688782|gb|ABE31982.1| formate dehydrogenase alpha subunit [Burkholderia xenovorans LB400]
          Length = 982

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     +G         +        +C+ CG C  
Sbjct: 188 YFTYDASKCIVCNRCVRACEETQGTFALTIAGRGFESRVAASENVPFMESECVSCGACVA 247

Query: 112 ACPVDAIVE 120
           ACP   + E
Sbjct: 248 ACPTATLQE 256


>gi|45201221|ref|NP_986791.1| AGR125Wp [Ashbya gossypii ATCC 10895]
 gi|44986075|gb|AAS54615.1| AGR125Wp [Ashbya gossypii ATCC 10895]
          Length = 607

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 22/56 (39%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           K C   C      +++G  C +    +    I    CI CG+C + CP  AI    
Sbjct: 19  KKCRQECKRSCPVVKTGKLCIEVAPTSKVAFISENLCIGCGICVKKCPFGAITIIN 74


>gi|20093032|ref|NP_619107.1| hypothetical protein MA4242 [Methanosarcina acetivorans C2A]
 gi|19918354|gb|AAM07587.1| conserved hypothetical protein [Methanosarcina acetivorans C2A]
          Length = 284

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 19/64 (29%), Gaps = 11/64 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ERC  C  C + C   A+                        C  CG C   CP  AI
Sbjct: 62  DPERCALCGNCASFCKFNALAALPNKILSF-----------PSLCHGCGGCSFVCPAGAI 110

Query: 119 VEGP 122
            E P
Sbjct: 111 DEKP 114


>gi|90422214|ref|YP_530584.1| thiamine pyrophosphate enzyme-like TPP-binding [Rhodopseudomonas
           palustris BisB18]
 gi|90104228|gb|ABD86265.1| thiamine pyrophosphate enzyme-like TPP-binding [Rhodopseudomonas
           palustris BisB18]
          Length = 606

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 6/59 (10%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           +C AC+ C  +       +    +  +G  R     ID   CI C LC + C VD I  
Sbjct: 548 QCTACQSCMNL---GCPALTWSDQWFEGRHRVK---IDPALCIGCTLCAQVCTVDCIKI 600


>gi|114566964|ref|YP_754118.1| ferridoxin [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
 gi|114337899|gb|ABI68747.1| ferridoxin [Syntrophomonas wolfei subsp. wolfei str. Goettingen]
          Length = 140

 Score = 43.5 bits (101), Expect = 0.009,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 9/66 (13%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
             E+ CI C  C + CP +A++I+         R ++    +  KC+ CG+C + CP  A
Sbjct: 79  WQEDICIQCGACASFCPTEALSID---------RDSMLVSFENSKCVVCGMCLDCCPTRA 129

Query: 118 IVEGPN 123
           I     
Sbjct: 130 IKLHFE 135


>gi|328789971|ref|XP_623630.2| PREDICTED: ATP-binding cassette sub-family E member 1 isoform 1
           [Apis mellifera]
          Length = 583

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 21/56 (37%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           K C   C      +  G  C +    +    I    CI CG+C + CP +AI    
Sbjct: 27  KRCRQECKRSCPVVRMGKLCIEVNPNSKIASISEELCIGCGICVKKCPFEAISIIN 82


>gi|325969960|ref|YP_004246151.1| glutamate synthase (NADPH) [Spirochaeta sp. Buddy]
 gi|324025198|gb|ADY11957.1| Glutamate synthase (NADPH) [Spirochaeta sp. Buddy]
          Length = 501

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 9/64 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++RCI C++CE  C       ++            R   D   C+ C  C   CP  A+
Sbjct: 15  NQDRCITCRVCERQCANLVHHYDAEK---------GRMTADESLCVNCHRCVSLCPTRAL 65

Query: 119 VEGP 122
               
Sbjct: 66  KIVK 69


>gi|301629981|ref|XP_002944110.1| PREDICTED: uncharacterized protein yeiA-like [Xenopus (Silurana)
           tropicalis]
          Length = 292

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 5/63 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117
            ++ CI C  C  +C               G R+   + +D  +C+ C LC   CPV   
Sbjct: 196 NQDACIQCGRCHVVCE-DTSHQAITFSKEGGMRK---FKVDEAECVGCNLCASICPVPEC 251

Query: 118 IVE 120
           I  
Sbjct: 252 ITM 254


>gi|293400770|ref|ZP_06644915.1| conserved domain protein [Erysipelotrichaceae bacterium 5_2_54FAA]
 gi|291305796|gb|EFE47040.1| conserved domain protein [Erysipelotrichaceae bacterium 5_2_54FAA]
          Length = 57

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 10/60 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + CI C  C  +CP  A+++ +  +             D   CI CG C  ACPV+AI
Sbjct: 6   NADTCIGCGACVGVCPVGALSMNADSKSEC----------DEGTCIDCGSCISACPVEAI 55



 Score = 35.5 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 9/24 (37%), Positives = 13/24 (54%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVE 120
           +++   CI CG C   CPV A+  
Sbjct: 4   NVNADTCIGCGACVGVCPVGALSM 27


>gi|241765113|ref|ZP_04763103.1| molybdopterin oxidoreductase [Acidovorax delafieldii 2AN]
 gi|241365264|gb|EER60099.1| molybdopterin oxidoreductase [Acidovorax delafieldii 2AN]
          Length = 936

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 5/64 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114
             + CI C  C   C  +    +       G    + +D    +    C+ CG C +ACP
Sbjct: 186 NLDACIQCNRCVRACREE-QVNDVIGYALRGADSKIVFDLDDPMAESTCVACGECVQACP 244

Query: 115 VDAI 118
             A+
Sbjct: 245 TGAL 248


>gi|157375180|ref|YP_001473780.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           sediminis HAW-EB3]
 gi|189043390|sp|A8FUX9|RNFB_SHESH RecName: Full=Electron transport complex protein rnfB
 gi|157317554|gb|ABV36652.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella
           sediminis HAW-EB3]
          Length = 189

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 25/84 (29%), Gaps = 10/84 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
            +             +     EE CI C  C   CP  AI               + + +
Sbjct: 90  VEPEPLSATEEVQVKKVAYIREEECIGCTKCIQACPVDAILGSGK----------LMHTV 139

Query: 99  DMIKCIYCGLCQEACPVDAIVEGP 122
               C  C LC   CPVD I   P
Sbjct: 140 ITDYCTGCDLCVAPCPVDCIDMLP 163


>gi|148379807|ref|YP_001254348.1| [Fe] hydrogenase [Clostridium botulinum A str. ATCC 3502]
 gi|153932525|ref|YP_001384105.1| [Fe] hydrogenase [Clostridium botulinum A str. ATCC 19397]
 gi|153935257|ref|YP_001387645.1| [Fe] hydrogenase [Clostridium botulinum A str. Hall]
 gi|148289291|emb|CAL83387.1| putative catalytic subunit of iron-only hydrogenase [Clostridium
           botulinum A str. ATCC 3502]
 gi|152928569|gb|ABS34069.1| iron hydrogenase 1 [Clostridium botulinum A str. ATCC 19397]
 gi|152931171|gb|ABS36670.1| iron hydrogenase 1 [Clostridium botulinum A str. Hall]
          Length = 577

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 22/68 (32%), Gaps = 3/68 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIE---SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
             ++CI C+ C  IC            G              I    C +CG C   CP 
Sbjct: 149 DMDKCILCRRCITICNEVQTVGTLSAIGRGFETVVAPAFSEAIKNTNCTFCGQCVSVCPT 208

Query: 116 DAIVEGPN 123
            A+ E  N
Sbjct: 209 GALTEVNN 216


>gi|153952794|ref|YP_001393559.1| hydrogenase [Clostridium kluyveri DSM 555]
 gi|219853459|ref|YP_002470581.1| hypothetical protein CKR_0116 [Clostridium kluyveri NBRC 12016]
 gi|146345675|gb|EDK32211.1| Predicted hydrogenase [Clostridium kluyveri DSM 555]
 gi|219567183|dbj|BAH05167.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 447

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 9/56 (16%)

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           CE  CP  AI I                 ID  KC  CG C +ACP  +I++   F
Sbjct: 93  CEKSCPFDAIFIHKEKNHPF---------IDKDKCTDCGFCVDACPNGSIMDTVQF 139


>gi|119717157|ref|YP_924122.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Nocardioides sp. JS614]
 gi|119537818|gb|ABL82435.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Nocardioides
           sp. JS614]
          Length = 505

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/79 (25%), Positives = 26/79 (32%), Gaps = 22/79 (27%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG---------LC 109
             ERCI CK C   CP  AI I++                   KC  C           C
Sbjct: 85  DNERCIGCKSCMQACPYDAIYIDAE-------------THTAAKCNMCAHRVDEGLEPAC 131

Query: 110 QEACPVDAIVEGPNFEFAT 128
              CP  +I  G   + ++
Sbjct: 132 VVVCPTHSIWVGDLDDPSS 150



 Score = 42.0 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 31/93 (33%), Gaps = 10/93 (10%)

Query: 33  TINYPFEKGSTSPRFRGEHALRR---YPNGEERC--IACKLCEAICPAQAITIESGPRCH 87
           T+    E      +FR          +P+       + C  C       A  ++  P   
Sbjct: 19  TVACKTEHEVPLGQFRTWVKYVDGGTFPDTTRSFGVMRCNHC-----TDAPCVKICPTQA 73

Query: 88  DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
              R     D D  +CI C  C +ACP DAI  
Sbjct: 74  LFKREDGIVDFDNERCIGCKSCMQACPYDAIYI 106



 Score = 40.5 bits (93), Expect = 0.072,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 28/97 (28%), Gaps = 17/97 (17%)

Query: 56  YPNGEERCIACKLCEAICPAQA-----ITIESGPRCHDGTRRTVRYDIDMIKCIYC--GL 108
           +   +  CI C  C   C  +                 GT         +++C +C    
Sbjct: 5   FAIDQRTCIGCHACTVACKTEHEVPLGQFRTWVKYVDGGTFPDTTRSFGVMRCNHCTDAP 64

Query: 109 CQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNG 145
           C + CP  A+            R++   D +     G
Sbjct: 65  CVKICPTQAL----------FKREDGIVDFDNERCIG 91


>gi|118576316|ref|YP_876059.1| ferredoxin [Cenarchaeum symbiosum A]
 gi|118194837|gb|ABK77755.1| ferredoxin [Cenarchaeum symbiosum A]
          Length = 309

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 22/67 (32%), Gaps = 5/67 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + CI    C   CP         P      R+ +        CI+C  C+  CP  AI
Sbjct: 246 DFDICIGDGACIDACPVDVYEWFDTPGNAGSNRKPIMAR--EPDCIFCLACEAVCPPKAI 303

Query: 119 VEGPNFE 125
                FE
Sbjct: 304 ---KIFE 307


>gi|77919232|ref|YP_357047.1| NAD-reducing iron-only hydrogenase large subunit [Pelobacter
           carbinolicus DSM 2380]
 gi|77545315|gb|ABA88877.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
           [Pelobacter carbinolicus DSM 2380]
          Length = 585

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 7/85 (8%)

Query: 59  GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115
             ++CI C+ CE +C   Q   + SG            +++++    C  CG C   CPV
Sbjct: 148 DMDKCILCRRCETMCNDVQTCGVLSGVNRGFDAVVAPAFEMNLYDTVCTNCGQCTAVCPV 207

Query: 116 DAIVEGPNFEFATETRQELYYDKER 140
            A+VE       T    +   D E+
Sbjct: 208 GALVEND----HTWKVIDAIADPEK 228


>gi|56478500|ref|YP_160089.1| phenylglyoxylate:acceptor oxidoreductase [Aromatoleum aromaticum
           EbN1]
 gi|56314543|emb|CAI09188.1| phenylglyoxylate:acceptor oxidoreductase [Aromatoleum aromaticum
           EbN1]
          Length = 99

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 11/83 (13%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100
              SP   G+   +R     ++C+ C +C   CP Q +   +             +D ++
Sbjct: 26  TDISPMLPGDWRSQRPVVDRDKCVKCAVCWLYCPVQCVEEHAA-----------WFDFNL 74

Query: 101 IKCIYCGLCQEACPVDAIVEGPN 123
             C  CG+C   CP  AI     
Sbjct: 75  NTCKGCGICATECPQRAITMIGE 97


>gi|294673542|ref|YP_003574158.1| RnfABCDGE type electron transport complex subunit B [Prevotella
           ruminicola 23]
 gi|294472470|gb|ADE81859.1| electron transport complex, RnfABCDGE type, B subunit [Prevotella
           ruminicola 23]
          Length = 293

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 25/82 (30%), Gaps = 11/82 (13%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P  +         +            CI C  CE  C   AIT+E+              
Sbjct: 198 PKNRRVFVSCVNKDKGPVAMKACAVSCIGCGKCEKECNFGAITVENNLAY---------- 247

Query: 97  DIDMIKCIYCGLCQEACPVDAI 118
            ID  KC  C  C   CP  AI
Sbjct: 248 -IDHTKCRLCRKCVTVCPKHAI 268



 Score = 39.3 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 9/60 (15%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+ C  C A C   AI++                ++D  KC  CG C +ACP + I    
Sbjct: 145 CLGCGDCVAACQFGAISLNPETGIP---------EVDDEKCTSCGACVKACPRNIIELRK 195



 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 8/81 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCH--------DGTRRTVRYDIDMIKCIYCGLCQ 110
            +E+C +C  C   CP   I +      +        +  +  V      + CI CG C+
Sbjct: 172 DDEKCTSCGACVKACPRNIIELRKKGPKNRRVFVSCVNKDKGPVAMKACAVSCIGCGKCE 231

Query: 111 EACPVDAIVEGPNFEFATETR 131
           + C   AI    N  +   T+
Sbjct: 232 KECNFGAITVENNLAYIDHTK 252


>gi|291523914|emb|CBK89501.1| Uncharacterized conserved protein [Eubacterium rectale DSM 17629]
 gi|291528625|emb|CBK94211.1| Uncharacterized conserved protein [Eubacterium rectale M104/1]
          Length = 202

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 11/58 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + CI CKLC ++CP + I I S P             I+   C++CG C E CP   I
Sbjct: 152 KDCIGCKLCYSVCPQKCIDISSVPV-----------TINQNHCLHCGRCAEICPKQCI 198


>gi|289670256|ref|ZP_06491331.1| ferredoxin [Xanthomonas campestris pv. musacearum NCPPB4381]
          Length = 139

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 31/81 (38%), Gaps = 11/81 (13%)

Query: 43  TSPRFRGEHAL-RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
              R RG H L +     E  CI C  C   CP  AI          G  + +   I  +
Sbjct: 67  PYDRSRGTHKLPQVAWIVEADCIGCTKCIQACPVDAIV---------GGAKHMHTVIAPL 117

Query: 102 KCIYCGLCQEACPVDAIVEGP 122
            C  C LC  ACPVD I   P
Sbjct: 118 -CTGCELCLPACPVDCIELHP 137



 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 15/38 (39%)

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               R     +      I    CI C  C +ACPVDAI
Sbjct: 66  CPYDRSRGTHKLPQVAWIVEADCIGCTKCIQACPVDAI 103


>gi|323526975|ref|YP_004229128.1| formate dehydrogenase subunit alpha [Burkholderia sp. CCGE1001]
 gi|323383977|gb|ADX56068.1| formate dehydrogenase, alpha subunit [Burkholderia sp. CCGE1001]
          Length = 981

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     +G         +        +C+ CG C  
Sbjct: 187 YFTYDPAKCIVCNRCVRACEETQGTFALTIAGRGFESRVAASENQPFMESECVSCGACVA 246

Query: 112 ACPVDAIVE 120
           ACP   + E
Sbjct: 247 ACPTATLQE 255


>gi|257790894|ref|YP_003181500.1| nitroreductase [Eggerthella lenta DSM 2243]
 gi|317488395|ref|ZP_07946949.1| nitroreductase [Eggerthella sp. 1_3_56FAA]
 gi|325830519|ref|ZP_08163972.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1]
 gi|257474791|gb|ACV55111.1| nitroreductase [Eggerthella lenta DSM 2243]
 gi|316912499|gb|EFV34054.1| nitroreductase [Eggerthella sp. 1_3_56FAA]
 gi|325487428|gb|EGC89869.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1]
          Length = 263

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 24/70 (34%), Gaps = 13/70 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   C    + +E       G             CI CG C   CP  A+
Sbjct: 6   DERYCIGCGRCVDDCVGANLEVEGVTARVKG------------LCILCGHCVAVCPTGAV 53

Query: 119 VEGPNFEFAT 128
              P+++ A 
Sbjct: 54  SI-PSYDMAD 62


>gi|224023701|ref|ZP_03642067.1| hypothetical protein BACCOPRO_00417 [Bacteroides coprophilus DSM
           18228]
 gi|224016923|gb|EEF74935.1| hypothetical protein BACCOPRO_00417 [Bacteroides coprophilus DSM
           18228]
          Length = 445

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/89 (29%), Positives = 33/89 (37%), Gaps = 3/89 (3%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
              KA   I  P  KGS+      +   RR     + CI C  C + CP           
Sbjct: 333 MMGKALANIEVPVCKGSSGVLVMNDKEARRA--EPQPCIRCAKCVSACPMGLEPFLLATC 390

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
              G    V +++ M  CI CG CQ  CP
Sbjct: 391 SAHGDWERVEHEMIMS-CIECGSCQFTCP 418


>gi|206895204|ref|YP_002246388.1| inosine-5'-monophosphate dehydrogenase related protein viii
           [Coprothermobacter proteolyticus DSM 5265]
 gi|206737821|gb|ACI16899.1| inosine-5'-monophosphate dehydrogenase related protein viii
           [Coprothermobacter proteolyticus DSM 5265]
          Length = 443

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 22/90 (24%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
           YF + +     P E              +     +  C+ C LC ++CP  A+ + +   
Sbjct: 366 YFHEPRIVKKLPQE-----------LEGKPLTKDDPTCVDCGLCTSVCPTGALKLINAKL 414

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
                            C  CGLC + CPV
Sbjct: 415 AFTK-----------EACTKCGLCSDICPV 433



 Score = 34.7 bits (78), Expect = 4.5,   Method: Composition-based stats.
 Identities = 8/20 (40%), Positives = 10/20 (50%)

Query: 103 CIYCGLCQEACPVDAIVEGP 122
           C+ CGLC   CP  A+    
Sbjct: 392 CVDCGLCTSVCPTGALKLIN 411


>gi|167044386|gb|ABZ09063.1| putative ABC transporter [uncultured marine crenarchaeote
           HF4000_APKG6D3]
          Length = 592

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +E C   K C   C       +SG  C      T +  ID   C  CG+C + CP +AI
Sbjct: 9   DKELCQP-KKCGLECIKYCPVNKSGADCIVLNEETNKALIDEDICNGCGICVKVCPFEAI 67

Query: 119 VEGP 122
               
Sbjct: 68  TIVN 71


>gi|167043306|gb|ABZ08011.1| putative ABC transporter [uncultured marine crenarchaeote
           HF4000_ANIW141M18]
          Length = 592

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 1/64 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +E C   K C   C       +SG  C      T +  ID   C  CG+C + CP +AI
Sbjct: 9   DKELCQP-KKCGLECIKYCPVNKSGADCIVLNEETNKALIDEDICNGCGICVKVCPFEAI 67

Query: 119 VEGP 122
               
Sbjct: 68  TIVN 71


>gi|147677827|ref|YP_001212042.1| coenzyme F420-reducing hydrogenase, beta subunit [Pelotomaculum
           thermopropionicum SI]
 gi|146273924|dbj|BAF59673.1| coenzyme F420-reducing hydrogenase, beta subunit [Pelotomaculum
           thermopropionicum SI]
          Length = 404

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 34/115 (29%), Gaps = 17/115 (14%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
              L+    G   C AC  C  +CP QA+                        C  CG+C
Sbjct: 5   FGELQEKVIGRGLCTACGTCAGVCPVQAVDWAEMDGEPVPE--------LAGACANCGIC 56

Query: 110 QEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDR-WESEIVRNIVTDSPYR 163
              CP          E      ++  + +ER     D  +  E +     D P R
Sbjct: 57  PAVCPGA--------EVNIPVLEKFIFGRERPEEIPDLGFYREALLAWSADLPVR 103


>gi|326204028|ref|ZP_08193889.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782]
 gi|325985795|gb|EGD46630.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782]
          Length = 303

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 22/76 (28%), Gaps = 11/76 (14%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           +                   E RCI C  C  IC     +            R   + + 
Sbjct: 31  RCPWCHSPHSREVESPILFNEVRCINCHNCMEICIQNVHSF-----------RNGIHMVQ 79

Query: 100 MIKCIYCGLCQEACPV 115
              CI CG C EACP 
Sbjct: 80  RKNCIKCGRCIEACPT 95


>gi|325262535|ref|ZP_08129272.1| ferredoxin 2 [Clostridium sp. D5]
 gi|324032367|gb|EGB93645.1| ferredoxin 2 [Clostridium sp. D5]
          Length = 570

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 11/65 (16%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +R     + +C  C  C   C  +AI++++               I    CI CG C E 
Sbjct: 1   MRVIDFKDAKCRHCYKCVRYCMVKAISVQNEQAH-----------ILKDHCINCGRCMEI 49

Query: 113 CPVDA 117
           CP +A
Sbjct: 50  CPQNA 54


>gi|307266701|ref|ZP_07548229.1| Fe-S cluster domain protein [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918303|gb|EFN48549.1| Fe-S cluster domain protein [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 435

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 11/59 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
            ++RC  C  C   CP +AI +  G              I   +CI CG C   CP  A
Sbjct: 10  DKDRCRGCTNCIKRCPTEAIRVRDGKA-----------RIINERCIDCGECIRVCPYHA 57


>gi|296125194|ref|YP_003632446.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Brachyspira murdochii DSM 12563]
 gi|296017010|gb|ADG70247.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Brachyspira murdochii DSM 12563]
          Length = 867

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 6/65 (9%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             C  C +C  ICP  AI +    +            I+  KC  CG+C + C       
Sbjct: 12  SECTGCSVCYHICPHNAINMIENEKGFYNPV------INKDKCTNCGICVKQCHALNDNF 65

Query: 121 GPNFE 125
              +E
Sbjct: 66  KTEYE 70



 Score = 33.5 bits (75), Expect = 9.1,   Method: Composition-based stats.
 Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 4/40 (10%)

Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140
            +C  C +C   CP +AI    N E           +K++
Sbjct: 12  SECTGCSVCYHICPHNAINMIEN-EKGFYNP---VINKDK 47


>gi|218961482|ref|YP_001741257.1| putative [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin
           bidirectional hydrogenase), subunit alpha (hymC-like)
           [Candidatus Cloacamonas acidaminovorans]
 gi|167730139|emb|CAO81051.1| putative [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin
           bidirectional hydrogenase), subunit alpha (hymC-like)
           [Candidatus Cloacamonas acidaminovorans]
          Length = 435

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 11/58 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C  C  C  +CP +AI +                +ID  +C+ CG C   C   AI
Sbjct: 15  DNCTGCTACVRVCPTEAIRVRDHKA-----------NIDPYRCVDCGNCVNVCRFHAI 61



 Score = 37.8 bits (86), Expect = 0.45,   Method: Composition-based stats.
 Identities = 8/32 (25%), Positives = 10/32 (31%)

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           +      I    C  C  C   CP +AI    
Sbjct: 5   KYFHALQILADNCTGCTACVRVCPTEAIRVRD 36


>gi|153854059|ref|ZP_01995392.1| hypothetical protein DORLON_01383 [Dorea longicatena DSM 13814]
 gi|149753441|gb|EDM63372.1| hypothetical protein DORLON_01383 [Dorea longicatena DSM 13814]
          Length = 56

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 11/67 (16%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + C++C  CEA CP  AI   +             Y+ID   C+ CG C   CP
Sbjct: 1   MAHVIGDECVSCGSCEAECPVGAIAQGAD-----------HYEIDADACVDCGACAAQCP 49

Query: 115 VDAIVEG 121
           V AI EG
Sbjct: 50  VGAISEG 56


>gi|189423931|ref|YP_001951108.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
           lovleyi SZ]
 gi|189420190|gb|ACD94588.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
           lovleyi SZ]
          Length = 665

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 7/81 (8%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             C+ C  C+ +C   A+  E   R   G        ++   C  CG CQ  CP  ++  
Sbjct: 592 NSCVGCFACKKVCAYGAVE-EKEIRDRQGNLIKTVAYVNPGVCAGCGTCQATCPSKSV-- 648

Query: 121 GPNFEFATETRQELYYDKERL 141
               E    T +++    E L
Sbjct: 649 ----ELDGYTDEQIVAMIEAL 665


>gi|308810905|ref|XP_003082761.1| 68 kDa protein HP68 (ISS) [Ostreococcus tauri]
 gi|116061230|emb|CAL56618.1| 68 kDa protein HP68 (ISS) [Ostreococcus tauri]
          Length = 944

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA---IVEGPN 123
           K C+  C      ++ G  C + + +     +    CI CG+C + CP +A   I    N
Sbjct: 362 KKCKQECKRSCPVVKVGKLCIEVSPKDKIAFLSEELCIGCGICVKKCPFEALTIINLPKN 421

Query: 124 FEFATETR 131
            E  T  R
Sbjct: 422 LEKETTHR 429


>gi|160878704|ref|YP_001557672.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Clostridium phytofermentans ISDg]
 gi|160427370|gb|ABX40933.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           phytofermentans ISDg]
          Length = 749

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 10/102 (9%)

Query: 28  FKAKTTINYPFEKGSTSPRFR----GEHALRRYPNGEERCIACKLCEAICPAQAITIESG 83
           F+ +       +K   S   R      +        +  C  C  C  +CP  AI ++  
Sbjct: 263 FRKRIKDFRKEQKKKLSQLIRLASYEMYVDCPTDIKKIECCGCTACREVCPYNAIEMKPD 322

Query: 84  PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
                     +   +D  KC+ C LC++ C      +   +E
Sbjct: 323 EEG------FIYPVVDHDKCVKCMLCKKVCVKRENPQTITYE 358


>gi|73669582|ref|YP_305597.1| ferredoxin [Methanosarcina barkeri str. Fusaro]
 gi|72396744|gb|AAZ71017.1| ferredoxin [Methanosarcina barkeri str. Fusaro]
          Length = 128

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 10/68 (14%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           R     EE CI C  C ++CP    + +                +D  KCI CG+C + C
Sbjct: 70  RPIHRDEEECIECGACISVCPMNVYSFDDSWNVL----------VDEKKCIQCGVCIKMC 119

Query: 114 PVDAIVEG 121
           P  A+  G
Sbjct: 120 PHGALKLG 127


>gi|20808300|ref|NP_623471.1| MinD family protein [Thermoanaerobacter tengcongensis MB4]
 gi|254479165|ref|ZP_05092514.1| putative CobQ/CobB/MinD/ParA nucleotide binding domain protein
           [Carboxydibrachium pacificum DSM 12653]
 gi|20516903|gb|AAM25075.1| MinD superfamily P-loop ATPase containing an inserted ferredoxin
           domain [Thermoanaerobacter tengcongensis MB4]
 gi|214034893|gb|EEB75618.1| putative CobQ/CobB/MinD/ParA nucleotide binding domain protein
           [Carboxydibrachium pacificum DSM 12653]
          Length = 282

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 36/105 (34%), Gaps = 13/105 (12%)

Query: 20  FFLCLRYFFKAKTTINYPFEKGSTSPR--FRGEHALRRYPNGEERCIACKLCEAICPAQA 77
               L+  F     +  P      +P   +  +  +       ++C  C  C   C   A
Sbjct: 24  LAKTLKESFYVDCDVEEPNGYLFLNPEIEYEKDVNVLIPEIDYDKCTLCGECVKACRFGA 83

Query: 78  ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           +T           ++ + +D     C  CG C E CP +AI E P
Sbjct: 84  LTKL--------IKKILVFDH---LCHSCGACYEICPYNAIREVP 117


>gi|89895362|ref|YP_518849.1| hypothetical protein DSY2616 [Desulfitobacterium hafniense Y51]
 gi|89334810|dbj|BAE84405.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 313

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 29/83 (34%), Gaps = 7/83 (8%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-- 96
           E+          + LR       +CI C  C A C A A     G        +   +  
Sbjct: 131 ERRRLPIEDSNPYILR----DLNKCILCGKCVATCGAVAERSVIGFVNRGFHAKVATFMD 186

Query: 97  -DIDMIKCIYCGLCQEACPVDAI 118
            D+    C+YC  C   CPV A+
Sbjct: 187 TDLKDSTCVYCNRCVAVCPVGAL 209


>gi|167037871|ref|YP_001665449.1| Fe-S cluster domain-containing protein [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320116288|ref|YP_004186447.1| Fe-S cluster domain-containing protein [Thermoanaerobacter brockii
           subsp. finnii Ako-1]
 gi|166856705|gb|ABY95113.1| Fe-S cluster domain protein [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|319929379|gb|ADV80064.1| Fe-S cluster domain protein [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 435

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 11/59 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
            ++RC  C  C   CP +AI +  G              I   +CI CG C   CP  A
Sbjct: 10  DKDRCRGCTNCIKRCPTEAIRVRDGKA-----------RIINERCIDCGECIRVCPYHA 57


>gi|330861513|emb|CBX71725.1| hypothetical protein YEW_ER20270 [Yersinia enterocolitica W22703]
          Length = 444

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/117 (19%), Positives = 31/117 (26%), Gaps = 28/117 (23%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------------------ITIES 82
            +     +   A        + C  C  C A CP  A                   ++E 
Sbjct: 6   WAPPSGKKRNIAEDIPIWQPDLCTQCNHCVAACPHSAIRAKVIQPEAMSGAPDSLQSLEV 65

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV--------DAIVEGPNFEFATETR 131
             R   G +      +    C  C LC E CP          AI   P  E   E +
Sbjct: 66  KARDMRGQKY--VLQVAPEDCTGCNLCYEVCPAKDRQNPEIKAINMKPRLEHLVEEK 120


>gi|313898385|ref|ZP_07831922.1| pyruvate synthase [Clostridium sp. HGF2]
 gi|312956767|gb|EFR38398.1| pyruvate synthase [Clostridium sp. HGF2]
          Length = 1168

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 27/83 (32%), Gaps = 16/83 (19%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQ-------------AITIESGPRCHDGTRR---TV 94
            A++      E CI C +C  +CP               A  +E       G        
Sbjct: 678 IAVQVPTWHPENCIQCGICSFVCPHATIRPFLLTEEEVAAAPMEFETITPMGKGVENLKY 737

Query: 95  RYDIDMIKCIYCGLCQEACPVDA 117
           R  +    C+ CGLC   CP  A
Sbjct: 738 RIQVTPANCVGCGLCAVECPGKA 760



 Score = 34.3 bits (77), Expect = 5.3,   Method: Composition-based stats.
 Identities = 8/20 (40%), Positives = 9/20 (45%)

Query: 99  DMIKCIYCGLCQEACPVDAI 118
               CI CG+C   CP   I
Sbjct: 686 HPENCIQCGICSFVCPHATI 705


>gi|309389497|gb|ADO77377.1| electron transport complex, RnfABCDGE type, B subunit
           [Halanaerobium praevalens DSM 2228]
          Length = 329

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 11/64 (17%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            + E  CIAC LC  +CP  AI I+                ID  KC+ CG C E CP  
Sbjct: 212 KSCEVGCIACSLCAKVCPVDAIEIKDNLAV-----------IDYEKCVNCGKCAEKCPTG 260

Query: 117 AIVE 120
            I  
Sbjct: 261 TIQF 264



 Score = 42.0 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 10/66 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +       + C+ C LC   CP +AI  E             R+ ID  KCI CGLC EA
Sbjct: 268 MIEKVEINDNCVGCTLCARACPVEAIEGE----------VKNRHQIDQDKCIQCGLCFEA 317

Query: 113 CPVDAI 118
           C V A+
Sbjct: 318 CNVKAV 323



 Score = 40.9 bits (94), Expect = 0.063,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 9/60 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E+C+ C  C   CP   I  E          + +        C+ C LC  ACPV+AI
Sbjct: 243 DYEKCVNCGKCAEKCPTGTIQFEG---------KMIEKVEINDNCVGCTLCARACPVEAI 293



 Score = 40.5 bits (93), Expect = 0.082,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 5/80 (6%)

Query: 57  PNGEERCIACKLCEAICPAQA-----ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
               E+C AC  C   CP        ++ ++  RC       +      + CI C LC +
Sbjct: 167 QIDPEKCTACGKCITECPRNILLLAPMSAQNHIRCSSHNSGKIVRKSCEVGCIACSLCAK 226

Query: 112 ACPVDAIVEGPNFEFATETR 131
            CPVDAI    N       +
Sbjct: 227 VCPVDAIEIKDNLAVIDYEK 246



 Score = 37.8 bits (86), Expect = 0.50,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 10/58 (17%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            + +  C+    CE++CP  AI +                 ID  KC  CG C   CP
Sbjct: 137 KSCQYSCLGFGDCESVCPFDAIYMSENGLP----------QIDPEKCTACGKCITECP 184


>gi|310659217|ref|YP_003936938.1| hypothetical protein CLOST_1913 [Clostridium sticklandii DSM 519]
 gi|308825995|emb|CBH22033.1| conserved protein of unknown function [Clostridium sticklandii]
          Length = 1178

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/135 (20%), Positives = 43/135 (31%), Gaps = 33/135 (24%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAIT---------------IESGPRCHDGTR-RTV 94
            A+       E CI C  C  +CP  AI                 E+ P    G      
Sbjct: 679 IAVNVPEWQAENCIQCNQCSFVCPHAAIRPFLVDDKEKAGAPEGFETLPAMGKGFEGLGY 738

Query: 95  RYDIDMIKCIYCGLCQEACP----VDAIVEGPN---------FEFATETRQELYYDKERL 141
           R  +  + C  CG C + CP      A++  P          F++A  +       KE L
Sbjct: 739 RIQVTPLDCTGCGNCADICPGKKGEKALLMKPIETQTSQIRKFDYAHSS----VSYKENL 794

Query: 142 LNNGDRWESEIVRNI 156
           +       S+  + +
Sbjct: 795 MAKNSIKGSQFAQPL 809


>gi|301062305|ref|ZP_07202971.1| 2Fe-2S iron-sulfur cluster binding domain protein [delta
           proteobacterium NaphS2]
 gi|300443605|gb|EFK07704.1| 2Fe-2S iron-sulfur cluster binding domain protein [delta
           proteobacterium NaphS2]
          Length = 276

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 21/61 (34%), Gaps = 3/61 (4%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C+LC  +C              DG R  +        CI CG C   CP  AI    
Sbjct: 140 CIRCRLCIRVCKEVVGIGAIKMVERDGLRLIIP---REGLCIGCGTCANICPTGAIHLAD 196

Query: 123 N 123
            
Sbjct: 197 E 197


>gi|300857175|ref|YP_003782159.1| putative iron-sulfur cluster-binding protein [Clostridium
           ljungdahlii DSM 13528]
 gi|300437290|gb|ADK17057.1| predicted iron-sulfur cluster-binding protein [Clostridium
           ljungdahlii DSM 13528]
          Length = 464

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 4/71 (5%)

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           C   A    S            R      +C +CG C ++CP ++I           TR+
Sbjct: 204 CNVAACYKGSNKAAGCPMFEFPRIMDTNAECNFCGNCVKSCPNNSIKISRR----VPTRE 259

Query: 133 ELYYDKERLLN 143
             +  K +L  
Sbjct: 260 LWFIRKPKLEE 270


>gi|299538616|ref|ZP_07051899.1| dihydropyrimidine dehydrogenase [Lysinibacillus fusiformis ZC1]
 gi|298726203|gb|EFI66795.1| dihydropyrimidine dehydrogenase [Lysinibacillus fusiformis ZC1]
          Length = 420

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 19/63 (30%), Gaps = 5/63 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117
             + CI C  C   C              +G             C+ C LC   CPVD A
Sbjct: 338 NNDVCINCNKCHIACE-DTSHQCIDLYTENGRPMLKV---REEDCVGCNLCSIVCPVDGA 393

Query: 118 IVE 120
           I  
Sbjct: 394 ISM 396


>gi|298375682|ref|ZP_06985639.1| ferredoxin 2 [Bacteroides sp. 3_1_19]
 gi|298268182|gb|EFI09838.1| ferredoxin 2 [Bacteroides sp. 3_1_19]
          Length = 459

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 11/61 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +RCI C  C   CP  AI I  G                   C+ CG C ++CP +AI
Sbjct: 13  DNDRCIGCTHCMKECPTGAIRIRDGKALIHKDW-----------CVDCGECLKSCPTEAI 61

Query: 119 V 119
            
Sbjct: 62  Y 62



 Score = 34.7 bits (78), Expect = 3.9,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 12/25 (48%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           ID  +CI C  C + CP  AI    
Sbjct: 12  IDNDRCIGCTHCMKECPTGAIRIRD 36


>gi|291244574|ref|XP_002742170.1| PREDICTED: dihydropyrimidine dehydrogenase-like [Saccoglossus
            kowalevskii]
          Length = 1025

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 22/78 (28%), Gaps = 14/78 (17%)

Query: 59   GEERCIACKLCEAICP---AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP- 114
             EE CI C  C   C     QAI  +                     C  C LC   CP 
Sbjct: 949  DEEMCINCGKCYMTCNDSGYQAIVFDPETHLPR----------INADCTGCTLCVSVCPI 998

Query: 115  VDAIVEGPNFEFATETRQ 132
            +D I   P        R 
Sbjct: 999  LDCITMIPRQIPHVINRG 1016


>gi|291287298|ref|YP_003504114.1| Cobyrinic acid ac-diamide synthase [Denitrovibrio acetiphilus DSM
           12809]
 gi|290884458|gb|ADD68158.1| Cobyrinic acid ac-diamide synthase [Denitrovibrio acetiphilus DSM
           12809]
          Length = 283

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 22/69 (31%), Gaps = 11/69 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L      E  C+ C  C   C   A+   +G                   C  CG C E 
Sbjct: 57  LPVPELCESLCVNCCSCVEFCQFNALVSLAGKVVAF-----------PELCHSCGGCIEI 105

Query: 113 CPVDAIVEG 121
           CP +A+ E 
Sbjct: 106 CPNNALKET 114


>gi|222530101|ref|YP_002573983.1| hypothetical protein Athe_2135 [Caldicellulosiruptor bescii DSM
           6725]
 gi|222456948|gb|ACM61210.1| protein of unknown function DUF362 [Caldicellulosiruptor bescii DSM
           6725]
          Length = 375

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 11/66 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI C  C   CPAQAI + S               +D+ KCI C  C E CP  AI
Sbjct: 314 DINICIGCAECFNACPAQAIEMRSRKAY-----------VDLKKCIRCYCCHELCPSKAI 362

Query: 119 VEGPNF 124
               +F
Sbjct: 363 KIKRSF 368


>gi|167767284|ref|ZP_02439337.1| hypothetical protein CLOSS21_01803 [Clostridium sp. SS2/1]
 gi|167711259|gb|EDS21838.1| hypothetical protein CLOSS21_01803 [Clostridium sp. SS2/1]
          Length = 450

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 28/89 (31%), Gaps = 3/89 (3%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
               A  T + P  K      F          N    CI C  C ++CP + +       
Sbjct: 342 MMGMAMFTTDVPAVKT--FSCFLAFTKDEVAANQPSNCIRCGRCVSVCPQK-LMPAKLSV 398

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
             D  +      +   +C+ CG C   CP
Sbjct: 399 LADHNQFDEFEKLYGAECVECGSCSFVCP 427


>gi|150390846|ref|YP_001320895.1| molybdopterin oxidoreductase [Alkaliphilus metalliredigens QYMF]
 gi|149950708|gb|ABR49236.1| molybdopterin oxidoreductase [Alkaliphilus metalliredigens QYMF]
          Length = 1187

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 31/93 (33%), Gaps = 12/93 (12%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEER-------CIACKLCEAICP----AQAITIESGPRCH 87
           E  ++   F GE   R+  +G          CI C LC   C       A+ +       
Sbjct: 582 EYEASPKSFTGEIHHRQSDDGHPFIIRDADKCILCGLCVRTCQEVIGVGALGLVDRG-FD 640

Query: 88  DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
                 +   +    CI CG C   CP  A+ E
Sbjct: 641 TIIMPGLDLPLKETDCISCGQCVTVCPTGALQE 673


>gi|150007737|ref|YP_001302480.1| ferredoxin 2 [Parabacteroides distasonis ATCC 8503]
 gi|301310227|ref|ZP_07216166.1| ferredoxin 2 [Bacteroides sp. 20_3]
 gi|149936161|gb|ABR42858.1| ferredoxin 2 [Parabacteroides distasonis ATCC 8503]
 gi|300831801|gb|EFK62432.1| ferredoxin 2 [Bacteroides sp. 20_3]
          Length = 459

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 11/61 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +RCI C  C   CP  AI I  G                   C+ CG C ++CP +AI
Sbjct: 13  DNDRCIGCTHCMKECPTGAIRIRDGKALIHKDW-----------CVDCGECLKSCPTEAI 61

Query: 119 V 119
            
Sbjct: 62  Y 62



 Score = 34.7 bits (78), Expect = 3.9,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 12/25 (48%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           ID  +CI C  C + CP  AI    
Sbjct: 12  IDNDRCIGCTHCMKECPTGAIRIRD 36


>gi|134298565|ref|YP_001112061.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfotomaculum reducens MI-1]
 gi|134051265|gb|ABO49236.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Desulfotomaculum reducens MI-1]
          Length = 196

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 11/59 (18%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           C AC LC + CP QAI +                 I   +C+ CG C + CP  AI  G
Sbjct: 85  CTACGLCVSACPDQAIVLGEEG-----------PCIVESQCLNCGKCAKICPTGAIYTG 132



 Score = 37.0 bits (84), Expect = 0.99,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 19/49 (38%)

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           A      S P+  D   +     +    C  CGLC  ACP  AIV G  
Sbjct: 57  AGCPNSCSQPQIKDFGLQGQAVPVVGDGCTACGLCVSACPDQAIVLGEE 105


>gi|167034636|ref|YP_001669867.1| dihydropyrimidine dehydrogenase [Pseudomonas putida GB-1]
 gi|166861124|gb|ABY99531.1| dihydroorotate dehydrogenase family protein [Pseudomonas putida
           GB-1]
          Length = 424

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV- 115
              +E CI C  C   C   +    +     DGT     Y++   +C+ C LCQ  CPV 
Sbjct: 339 HIDQEACIGCGRCHIACEDTSHQAIASTLKADGTHA---YNVIEEECVGCNLCQITCPVE 395

Query: 116 DAIVE 120
           + I  
Sbjct: 396 NCIEM 400


>gi|189426181|ref|YP_001953358.1| molybdopterin oxidoreductase [Geobacter lovleyi SZ]
 gi|189422440|gb|ACD96838.1| molybdopterin oxidoreductase [Geobacter lovleyi SZ]
          Length = 815

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 22/64 (34%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            + RC+ C  C  IC                  +        + C +CG C   CPV A+
Sbjct: 143 DQNRCVLCGKCVRICDEIVARGALTFISRGIETKIGTEFDGPLSCEFCGSCISVCPVGAL 202

Query: 119 VEGP 122
           +  P
Sbjct: 203 LARP 206


>gi|46581201|ref|YP_012009.1| ferredoxin [Desulfovibrio vulgaris str. Hildenborough]
 gi|120601567|ref|YP_965967.1| ferredoxin [Desulfovibrio vulgaris DP4]
 gi|46450622|gb|AAS97269.1| iron-sulfur cluster-binding protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|120561796|gb|ABM27540.1| electron transport complex, RnfABCDGE type, B subunit
           [Desulfovibrio vulgaris DP4]
 gi|311234870|gb|ADP87724.1| electron transport complex, RnfABCDGE type, B subunit
           [Desulfovibrio vulgaris RCH1]
          Length = 295

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 5/67 (7%)

Query: 57  PNGEERCIACKLCEAICPAQAITIES-----GPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
                +C  C +C   CP   + +          C    +     ++  + CI CG C +
Sbjct: 163 HVDLAKCTGCGVCINACPRNTLELIPVRARVAVMCSTKEKLKAVMEVCEVGCINCGKCVK 222

Query: 112 ACPVDAI 118
           ACP  AI
Sbjct: 223 ACPAHAI 229



 Score = 37.8 bits (86), Expect = 0.55,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 11/66 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            +    C+    C  +CP  A+ IE+G              +D+ KC  CG+C  ACP +
Sbjct: 134 DSCSYSCLGLGDCVEVCPFDALHIENGLTH-----------VDLAKCTGCGVCINACPRN 182

Query: 117 AIVEGP 122
            +   P
Sbjct: 183 TLELIP 188


>gi|73669336|ref|YP_305351.1| hypothetical protein Mbar_A1830 [Methanosarcina barkeri str.
           Fusaro]
 gi|72396498|gb|AAZ70771.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 310

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 17/85 (20%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
            ++L       E CI C  C   C  +A++                +++D  +C  C +C
Sbjct: 55  YYSLEIARIDPELCIECGKCREFCRYEAVS--------------ENFEVDPYECEGCAVC 100

Query: 110 QEACPVDAIVEGPNF---EFATETR 131
              CP  A+          F++ETR
Sbjct: 101 TIVCPNGAVSMKKKVSGQSFSSETR 125


>gi|150015601|ref|YP_001307855.1| nitroreductase [Clostridium beijerinckii NCIMB 8052]
 gi|149902066|gb|ABR32899.1| nitroreductase [Clostridium beijerinckii NCIMB 8052]
          Length = 263

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 10/66 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +      +++CI C LC   CP + +                   I   +CI CG C   
Sbjct: 1   MNLITVNQDKCIKCGLCVNECPERVLEPSENGPKE----------ICGEECISCGHCVAI 50

Query: 113 CPVDAI 118
           CP +AI
Sbjct: 51  CPREAI 56



 Score = 35.1 bits (79), Expect = 3.2,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 13/27 (48%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPN 123
            ++  KCI CGLC   CP   +    N
Sbjct: 5   TVNQDKCIKCGLCVNECPERVLEPSEN 31


>gi|315919787|ref|ZP_07916027.1| 4Fe-4S ferredoxin [Bacteroides sp. D2]
 gi|313693662|gb|EFS30497.1| 4Fe-4S ferredoxin [Bacteroides sp. D2]
          Length = 294

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 12/77 (15%)

Query: 51  HALRRYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGT--------RRTVRYDI 98
              + +     +CI C  C A CP    ++ I   + P+              +  R   
Sbjct: 172 ERWKYWMEEMSKCIKCYACRAACPLCYCSRCIVEVNCPQWVQPWSAPLTNMEWQINRVMH 231

Query: 99  DMIKCIYCGLCQEACPV 115
              +CI CG C++ACPV
Sbjct: 232 MAGRCIGCGACKQACPV 248


>gi|304439744|ref|ZP_07399642.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC
           BAA-1640]
 gi|304371731|gb|EFM25339.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC
           BAA-1640]
          Length = 79

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 29/82 (35%), Gaps = 12/82 (14%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
           +P     T    +            + CIAC  C+  CP   I+  +             
Sbjct: 5   FPSVILKTVKGIKFYGGAIMAHIITDACIACGACQPECPVNCISEGA------------I 52

Query: 96  YDIDMIKCIYCGLCQEACPVDA 117
           Y+ID  +CI CG C   CP  A
Sbjct: 53  YEIDQDQCIDCGACSSVCPTGA 74



 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 16/30 (53%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
            I    CI CG CQ  CPV+ I EG  +E 
Sbjct: 26  HIITDACIACGACQPECPVNCISEGAIYEI 55


>gi|303256660|ref|ZP_07342674.1| ferredoxin-type protein NapH [Burkholderiales bacterium 1_1_47]
 gi|302860151|gb|EFL83228.1| ferredoxin-type protein NapH [Burkholderiales bacterium 1_1_47]
          Length = 294

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 8/73 (10%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G+  L +     + C  C  C  +C          P+  +  +          +C  CG 
Sbjct: 219 GKIGLTKVKFDNDTCTRCGDCIKVC--------PEPQVINFKKAAEVGMYASGECTNCGK 270

Query: 109 CQEACPVDAIVEG 121
           C   CP +++  G
Sbjct: 271 CVSICPENSLNFG 283



 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 15/53 (28%), Gaps = 6/53 (11%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
                C  +CP  A           G     +   D   C  CG C + CP  
Sbjct: 200 TKRGWCGHLCPLGAFW------ALWGKIGLTKVKFDNDTCTRCGDCIKVCPEP 246


>gi|302343550|ref|YP_003808079.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075]
 gi|301640163|gb|ADK85485.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075]
          Length = 352

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 3/67 (4%)

Query: 59  GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQEACPV 115
              +CI C  C   C   Q             ++     D   +   C++CG C + CP 
Sbjct: 144 DFSKCILCGRCVQACNEVQVNKAIGYGYRGAKSKIVTSGDRPYNQSDCVFCGQCVQVCPT 203

Query: 116 DAIVEGP 122
            A+ E  
Sbjct: 204 GALTEKK 210


>gi|288560647|ref|YP_003424133.1| polyferredoxin [Methanobrevibacter ruminantium M1]
 gi|288543357|gb|ADC47241.1| polyferredoxin [Methanobrevibacter ruminantium M1]
          Length = 275

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
           H        ++RC  C  C  +C   AIT+    R           D++   C+ C LC+
Sbjct: 176 HGHMYSYIDKDRCCGCGSCANLCIQGAITL---KRDLGPVVIYSHLDVNQDICVACELCE 232

Query: 111 EACPVDAI 118
           + CPV AI
Sbjct: 233 DNCPVGAI 240



 Score = 41.2 bits (95), Expect = 0.044,   Method: Composition-based stats.
 Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 16/74 (21%)

Query: 63  CIACKLCEAICPAQAITIESGP----------------RCHDGTRRTVRYDIDMIKCIYC 106
           C+ C++C   CP   I +  G                 +      +     I+   CI C
Sbjct: 80  CVQCEICAQTCPVSCIYVWDGETVIKEDDSVEYTLKELKVPHRNLKMEDISINREVCIGC 139

Query: 107 GLCQEACPVDAIVE 120
           G C + CP +AI  
Sbjct: 140 GSCLKYCPTNAISL 153



 Score = 35.5 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 11/66 (16%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                ++ C+AC+LCE  CP  AI +  G              ++  KCI C  C   CP
Sbjct: 217 HLDVNQDICVACELCEDNCPVGAIKVVDGEIV-----------LNNDKCIRCKECSSRCP 265

Query: 115 VDAIVE 120
           V A+  
Sbjct: 266 VGALNL 271



 Score = 34.3 bits (77), Expect = 5.1,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 25/88 (28%), Gaps = 12/88 (13%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG------------TRRTVR 95
                +       E CI C  C   CP  AI++ S                       + 
Sbjct: 121 HRNLKMEDISINREVCIGCGSCLKYCPTNAISLRSKEFIEAHGEECPEVGAIDSEHGHMY 180

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPN 123
             ID  +C  CG C   C   AI    +
Sbjct: 181 SYIDKDRCCGCGSCANLCIQGAITLKRD 208


>gi|256003828|ref|ZP_05428815.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           thermocellum DSM 2360]
 gi|255992166|gb|EEU02261.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           thermocellum DSM 2360]
          Length = 403

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 1/54 (1%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           + CI C  C   CP   + +        G    +     ++ CI CG C   CP
Sbjct: 326 QACIRCGRCVRACPMNLLPLYLNNNSIRGNIEELN-RYHVMDCIECGSCAYVCP 378



 Score = 37.8 bits (86), Expect = 0.53,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 25/114 (21%), Gaps = 18/114 (15%)

Query: 12  FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71
           F+ E++           K + T++ P  K                      C    +   
Sbjct: 233 FISEYIK----TGMPLIKKRVTVDGPSVKRP---GNVEVLIGTPISEVFSFCGGFGIVPK 285

Query: 72  ICPAQ------AITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEACP 114
                      A      P             T         CI CG C  ACP
Sbjct: 286 KILMGGPMMGIAQYTLDTPVLKHTNALLAFDETTAVLPKEQACIRCGRCVRACP 339


>gi|255319168|ref|ZP_05360386.1| electron transport complex, rnfaBcdge type, b subunit
           [Acinetobacter radioresistens SK82]
 gi|262379300|ref|ZP_06072456.1| NADH:ubiquinone oxidoreductase [Acinetobacter radioresistens SH164]
 gi|255303814|gb|EET83013.1| electron transport complex, rnfaBcdge type, b subunit
           [Acinetobacter radioresistens SK82]
 gi|262298757|gb|EEY86670.1| NADH:ubiquinone oxidoreductase [Acinetobacter radioresistens SH164]
          Length = 266

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 29/85 (34%), Gaps = 10/85 (11%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E+     +  G     +    E+ CI C  C + CP  AI               + + +
Sbjct: 68  EESVWPIQADGRPQRMKAVIREDECIGCTKCISACPVDAIIGSGK----------LMHTV 117

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPN 123
               C  C LC   CPVD I    +
Sbjct: 118 LTDLCTGCELCIPPCPVDCIDLIED 142


>gi|242399075|ref|YP_002994499.1| phosphoadenosine 5'-phosphosulfate reductase, fused to RNA-binding
           PUA and 4Fe-4S binding domains [Thermococcus sibiricus
           MM 739]
 gi|242265468|gb|ACS90150.1| phosphoadenosine 5'-phosphosulfate reductase, fused to RNA-binding
           PUA and 4Fe-4S binding domains [Thermococcus sibiricus
           MM 739]
          Length = 628

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 9/58 (15%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             C+ C +C   CP  A+ I S  R         + ++D  KCI+C  C E CP+  I
Sbjct: 571 YECVGCGVCVGRCPENALRINSNTR---------KIEVDWEKCIHCRECVEVCPLLKI 619


>gi|255089569|ref|XP_002506706.1| predicted protein [Micromonas sp. RCC299]
 gi|226521979|gb|ACO67964.1| predicted protein [Micromonas sp. RCC299]
          Length = 614

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA---IVEGPN 123
           K C+  C      ++ G  C + +  +    I    CI CG+C + CP +A   I    N
Sbjct: 30  KKCKQECKKSCPVVKVGKLCIEVSGSSKLAYISEDLCIGCGICVKKCPFEAVQIINLPKN 89

Query: 124 FEFATETR 131
            E  T  R
Sbjct: 90  LEKETTHR 97


>gi|206901319|ref|YP_002250452.1| iron-sulfur cluster-binding protein [Dictyoglomus thermophilum
           H-6-12]
 gi|206740422|gb|ACI19480.1| iron-sulfur cluster-binding protein [Dictyoglomus thermophilum
           H-6-12]
          Length = 137

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 9/60 (15%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ++C+ C  C + CP +A+  +          +T+    D  KC  CG+C E CP  A+  
Sbjct: 83  DKCVHCGYCVSYCPTKALNRDE---------KTLTVSFDSQKCTACGICVEICPYSAMEM 133


>gi|195355035|ref|XP_002043999.1| GM13670 [Drosophila sechellia]
 gi|194129244|gb|EDW51287.1| GM13670 [Drosophila sechellia]
          Length = 922

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 17/64 (26%), Gaps = 8/64 (12%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP-VDAI 118
            + CI C  C   C                  +          C  C LC   CP +D I
Sbjct: 841 PDMCINCGKCYMTCA-------DSGYQAIEFDKDTHIPHVNDDCTGCTLCVSVCPIIDCI 893

Query: 119 VEGP 122
              P
Sbjct: 894 TMVP 897


>gi|156537914|ref|XP_001608142.1| PREDICTED: similar to ribonuclease L inhibitor homolog [Nasonia
           vitripennis]
          Length = 608

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 22/56 (39%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           K C   C      +  G  C + T  +    I    CI CG+C + CP +AI    
Sbjct: 27  KRCRQECKRSCPVVRMGKLCIEVTPNSKIASISEELCIGCGICVKKCPFEAISIIN 82


>gi|281357846|ref|ZP_06244332.1| hydrogenase, Fe-only [Victivallis vadensis ATCC BAA-548]
 gi|281315793|gb|EFA99820.1| hydrogenase, Fe-only [Victivallis vadensis ATCC BAA-548]
          Length = 578

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM---IKCIYCGLCQEACPV 115
             ++CI C+ CE  C A                      +      +C++CG C +ACPV
Sbjct: 148 DLDKCIMCRRCETACNAIQTVGVLSGVGRGFNAVVAPAGLKPLAETECVFCGQCVQACPV 207

Query: 116 DAIVEGP 122
            A+ E  
Sbjct: 208 GALSEID 214


>gi|11127703|gb|AAG31038.1|AF262402_1 putative iron hydrogenase HydA [Spironucleus barkhanus]
          Length = 467

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 23/73 (31%), Gaps = 10/73 (13%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY----------DIDMIKCIYC 106
               ++CI C++C   C                      Y           +    C  C
Sbjct: 24  QIDYQKCIGCQMCAKTCTDSQNFNIFKISAPKTKPFVNAYGSVAEGTERNALAGTDCTGC 83

Query: 107 GLCQEACPVDAIV 119
           G C  ACPV+A++
Sbjct: 84  GACVRACPVEALM 96


>gi|71083382|ref|YP_266101.1| formate dehydrogenase subunit alpha (fdhF-2) [Candidatus
           Pelagibacter ubique HTCC1062]
 gi|71062495|gb|AAZ21498.1| formate dehydrogenase Alpha subunit (fdhF-2) [Candidatus
           Pelagibacter ubique HTCC1062]
          Length = 922

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 26/87 (29%), Gaps = 6/87 (6%)

Query: 38  FEKGSTSPRFRGEHA---LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
             + +T  + +G              + CI C  C   C     +            +  
Sbjct: 132 DHRYNTPKQHKGIPRDTSHDYMRMNLDNCINCGRCVRACDEIQGSFVLTMSGRGFESKIT 191

Query: 95  RYDIDM---IKCIYCGLCQEACPVDAI 118
             +  +     C+ CG C   CP DAI
Sbjct: 192 TDNDALFGDSSCVSCGACAHTCPTDAI 218


>gi|18977342|ref|NP_578699.1| 2-ketoisovalerate ferredoxin oxidoreductase subunit delta
           [Pyrococcus furiosus DSM 3638]
 gi|6686104|sp|Q51800|VORD_PYRFU RecName: Full=Ketoisovalerate oxidoreductase subunit vorD;
           Short=VOR; AltName: Full=2-oxoisovalerate ferredoxin
           reductase subunit delta; AltName: Full=2-oxoisovalerate
           oxidoreductase delta chain
 gi|1197359|emb|CAA59501.1| 2-ketovalerate ferredoxin oxidoreductase delta-2 [Pyrococcus
           furiosus DSM 3638]
 gi|18893019|gb|AAL81094.1| 2-ketovalerate ferredoxin oxidoreductase subunit delta-2
           [Pyrococcus furiosus DSM 3638]
          Length = 105

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 10/65 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            EE+C+ C +C   CP  AI I+                ID   C  CG+C   CP  AI
Sbjct: 49  NEEKCVKCYICWKYCPEPAIYIKPDGYVA----------IDYDYCKGCGICANECPTKAI 98

Query: 119 VEGPN 123
                
Sbjct: 99  TMIKE 103


>gi|332017503|gb|EGI58223.1| ATP-binding cassette sub-family E member 1 [Acromyrmex echinatior]
          Length = 602

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 21/56 (37%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           K C   C      +  G  C +    +    I    CI CG+C + CP +AI    
Sbjct: 21  KRCRQECKRSCPVVRMGKLCIEVNPNSKIAAISEELCIGCGICVKKCPFEAISIIN 76


>gi|329766285|ref|ZP_08257832.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Candidatus Nitrosoarchaeum limnia SFB1]
 gi|329137187|gb|EGG41476.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Candidatus Nitrosoarchaeum limnia SFB1]
          Length = 316

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 5/67 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + CIA   C   CP         P      ++ +        CI+C  C+  CP  AI
Sbjct: 253 DYDICIADGGCIEACPVGVYEWFDTPGNPASEKKPLMSK--EPDCIFCLACEGVCPPQAI 310

Query: 119 VEGPNFE 125
                FE
Sbjct: 311 ---KIFE 314


>gi|313901186|ref|ZP_07834674.1| 4Fe-4S binding domain protein [Clostridium sp. HGF2]
 gi|312954144|gb|EFR35824.1| 4Fe-4S binding domain protein [Clostridium sp. HGF2]
          Length = 501

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 20/64 (31%), Gaps = 9/64 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E RC  C++CE  C  +    +                 D   C+ C  C   CP  A+
Sbjct: 15  DETRCTHCRICEQQCANEVHYFDEEK---------SMMKCDDTNCVNCQRCVSLCPTRAL 65

Query: 119 VEGP 122
               
Sbjct: 66  KIVK 69


>gi|309390310|gb|ADO78190.1| nitroreductase [Halanaerobium praevalens DSM 2228]
          Length = 273

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/107 (22%), Positives = 35/107 (32%), Gaps = 16/107 (14%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                +E+CI C  C   C  + I +E G              I    C  CG C   CP
Sbjct: 1   MMQIDQEKCIGCAKCITDCLVRDIVMEDGKA-----------RIKNESCFKCGHCIAICP 49

Query: 115 VDAIVEGPNFEF---ATETRQELYYDKERLLNNGDRWESEIVRNIVT 158
            DA+     +E         ++     E LL N  ++   I +    
Sbjct: 50  ADAVSST-EYEMDEVKEYKAEKFEVPAENLL-NFIKFRRTIRQFKDQ 94


>gi|262381755|ref|ZP_06074893.1| ferredoxin 2 [Bacteroides sp. 2_1_33B]
 gi|262296932|gb|EEY84862.1| ferredoxin 2 [Bacteroides sp. 2_1_33B]
          Length = 459

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 11/61 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +RCI C  C   CP  AI I  G                   C+ CG C ++CP +AI
Sbjct: 13  DNDRCIGCTHCMKECPTGAIRIRDGKALIHKDW-----------CVDCGECLKSCPTEAI 61

Query: 119 V 119
            
Sbjct: 62  Y 62



 Score = 34.7 bits (78), Expect = 4.0,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 12/25 (48%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           ID  +CI C  C + CP  AI    
Sbjct: 12  IDNDRCIGCTHCMKECPTGAIRIRD 36


>gi|255013558|ref|ZP_05285684.1| ferredoxin 2 [Bacteroides sp. 2_1_7]
          Length = 459

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 11/61 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +RCI C  C   CP  AI I  G                   C+ CG C ++CP +AI
Sbjct: 13  DNDRCIGCTHCMKECPTGAIRIRDGKALIHKDW-----------CVDCGECLKSCPTEAI 61

Query: 119 V 119
            
Sbjct: 62  Y 62



 Score = 34.7 bits (78), Expect = 4.0,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 12/25 (48%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           ID  +CI C  C + CP  AI    
Sbjct: 12  IDNDRCIGCTHCMKECPTGAIRIRD 36


>gi|239623526|ref|ZP_04666557.1| anaerobic sulfite reductase subunit C [Clostridiales bacterium
           1_7_47_FAA]
 gi|239521557|gb|EEQ61423.1| anaerobic sulfite reductase subunit C [Clostridiales bacterium
           1_7_47FAA]
          Length = 346

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/97 (19%), Positives = 29/97 (29%), Gaps = 7/97 (7%)

Query: 25  RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84
            ++         P +    +    G   + +     +RCI C  C   C   A       
Sbjct: 141 SHYHIKVAVAGCPNDCVKANFNDFGIMGINKQDYDIDRCIGCGSCVEACQHHAT------ 194

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
                  +  + D D   C+ CG C   CP  A   G
Sbjct: 195 -GVLSLNKNGKIDKDACCCVGCGECSLICPTGAWTRG 230


>gi|254430754|ref|ZP_05044457.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Cyanobium sp. PCC
           7001]
 gi|197625207|gb|EDY37766.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Cyanobium sp. PCC
           7001]
          Length = 1226

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/90 (21%), Positives = 26/90 (28%), Gaps = 24/90 (26%)

Query: 58  NGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTVRYDIDMI 101
              + C+ C  C  +CP   I                   +  R H  + +T    +   
Sbjct: 721 WESDLCVQCGKCVMVCPHGVIRAKVADPAAFDAAPEGFRTAPARDHAFSGQTFTIQVAAE 780

Query: 102 KCIYCGLCQEACPVD--------AIVEGPN 123
            C  C LC E CP          AI   P 
Sbjct: 781 DCTGCSLCVEVCPARDRRQPRRKAINMAPQ 810


>gi|167772909|ref|ZP_02444962.1| hypothetical protein ANACOL_04297 [Anaerotruncus colihominis DSM
           17241]
 gi|167664842|gb|EDS08972.1| hypothetical protein ANACOL_04297 [Anaerotruncus colihominis DSM
           17241]
          Length = 93

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 25/75 (33%), Gaps = 8/75 (10%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G   + R       CI C +C+  CPA  ITI           R    +     C  CG+
Sbjct: 23  GSWRIERPQVDASTCIKCGVCQRYCPADVITIHKD--------RPDCVEFMWDYCKGCGI 74

Query: 109 CQEACPVDAIVEGPN 123
           C   CP   I     
Sbjct: 75  CANECPKGCIQMVSE 89


>gi|219847452|ref|YP_002461885.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Chloroflexus aggregans DSM 9485]
 gi|219541711|gb|ACL23449.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chloroflexus
           aggregans DSM 9485]
          Length = 559

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/81 (27%), Positives = 26/81 (32%), Gaps = 12/81 (14%)

Query: 49  GEHALRRYPNGEERCIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
           G     R      RC  C    C  ICP  A+   +        +           CI C
Sbjct: 44  GTFPNTRRHFQVTRCNHCANPPCVRICPVTAMYQRTDGIVEFDPKV----------CIGC 93

Query: 107 GLCQEACPVDAIVEGPNFEFA 127
             C +ACP DAI   P    A
Sbjct: 94  KACMQACPYDAIYIDPETHNA 114



 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 24/122 (19%), Positives = 35/122 (28%), Gaps = 12/122 (9%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCL-RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           R +   V           F +    +          P     T+   R +  +   P   
Sbjct: 35  RTWVKYVETGTFPNTRRHFQVTRCNHCANPPCVRICP----VTAMYQRTDGIVEFDP--- 87

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI CK C   CP  AI I+                   +K      C+  CP  AI+ 
Sbjct: 88  KVCIGCKACMQACPYDAIYIDPETHNAAKCHFCAHRIDQGLK----PACEIVCPEQAIIS 143

Query: 121 GP 122
           G 
Sbjct: 144 GD 145



 Score = 42.4 bits (98), Expect = 0.022,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 7/72 (9%)

Query: 59  GEERCIACKLCEAICPAQA-----ITIESGPRCHDGTRRTVRYDIDMIKCIYCGL--CQE 111
            + +CI C  C   C ++      +          GT    R    + +C +C    C  
Sbjct: 9   DQRKCIGCHACSTACKSENEVPLGVYRTWVKYVETGTFPNTRRHFQVTRCNHCANPPCVR 68

Query: 112 ACPVDAIVEGPN 123
            CPV A+ +  +
Sbjct: 69  ICPVTAMYQRTD 80


>gi|115485837|ref|NP_001068062.1| Os11g0546000 [Oryza sativa Japonica Group]
 gi|77551423|gb|ABA94220.1| ATP-binding cassette sub-family E member 1, putative, expressed
           [Oryza sativa Japonica Group]
 gi|113645284|dbj|BAF28425.1| Os11g0546000 [Oryza sativa Japonica Group]
          Length = 604

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           K C   C      +++G  C + T  +    I    CI CG+C + CP DAI    
Sbjct: 19  KKCRQECKKSCPVVKTGKLCIEVTPASKLAFISEELCIGCGICVKKCPFDAIEIIN 74


>gi|189346239|ref|YP_001942768.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chlorobium
           limicola DSM 245]
 gi|189340386|gb|ACD89789.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chlorobium
           limicola DSM 245]
          Length = 258

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/122 (23%), Positives = 41/122 (33%), Gaps = 20/122 (16%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
           +  +   T   P E       FR    +        RCI C+ C A CP  + +      
Sbjct: 122 HCAEPPCTKACPTE-----ATFRRWDGIVSM--DYHRCIGCRFCMAACPYGSRSFNWRDP 174

Query: 86  CHD----GTRRTVRYDIDMIKCIYCG---------LCQEACPVDAIVEGPNFEFATETRQ 132
                   T    R    + KC +C           C EACP  A+V G   +  +E R+
Sbjct: 175 REGIKLASTGYPTRMQGVVEKCNFCSERLVKGLDPACVEACPEQALVFGDLNDPGSEIRK 234

Query: 133 EL 134
            L
Sbjct: 235 LL 236



 Score = 34.7 bits (78), Expect = 4.2,   Method: Composition-based stats.
 Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 5/49 (10%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           C  C      +A   E+  R     R      +D  +CI C  C  ACP
Sbjct: 120 CNHCAEPPCTKACPTEATFR-----RWDGIVSMDYHRCIGCRFCMAACP 163


>gi|325289255|ref|YP_004265436.1| BFD domain protein (2Fe-2S)-binding domain protein
           [Syntrophobotulus glycolicus DSM 8271]
 gi|324964656|gb|ADY55435.1| BFD domain protein (2Fe-2S)-binding domain protein
           [Syntrophobotulus glycolicus DSM 8271]
          Length = 256

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 8/59 (13%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           I C  CE+ CP  AITI        G   T    +D  KC  CGLC   CP  AI    
Sbjct: 39  IPCNPCESACPFGAITI--------GEELTALPVLDQSKCRGCGLCVSGCPGLAIFLVD 89


>gi|307352589|ref|YP_003893640.1| aminoglycoside phosphotransferase-like protein [Methanoplanus
           petrolearius DSM 11571]
 gi|307155822|gb|ADN35202.1| aminoglycoside phosphotransferase-like protein [Methanoplanus
           petrolearius DSM 11571]
          Length = 431

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/99 (26%), Positives = 33/99 (33%), Gaps = 21/99 (21%)

Query: 29  KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88
           +   T   P+    +     G   L+R  +    CI C  CE +CP              
Sbjct: 353 RPFCTFLCPYGLVFSMASRFGRFGLKRTED----CIDCGKCERVCPT------------- 395

Query: 89  GTRRTVRYDIDMIKCIYCGLCQEACPVD-AIVEGPNFEF 126
                   D    +C  CG C E CP D AIV G   E 
Sbjct: 396 ---VEAGRDGRKAECYLCGRCIEVCPKDSAIVFGKRSEP 431



 Score = 37.0 bits (84), Expect = 0.90,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 7/53 (13%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
            +    C  +CP   +   +      G +R          CI CG C+  CP 
Sbjct: 350 FVYRPFCTFLCPYGLVFSMASRFGRFGLKR-------TEDCIDCGKCERVCPT 395


>gi|300709461|ref|YP_003735275.1| formate dehydrogenase, alpha subunit [Halalkalicoccus jeotgali B3]
 gi|299123144|gb|ADJ13483.1| formate dehydrogenase, alpha subunit [Halalkalicoccus jeotgali B3]
          Length = 1088

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 4/68 (5%)

Query: 57  PNGEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
                +CI C  C   C        + +E          ++    +D   C+ CG C   
Sbjct: 197 QIDRNKCILCNRCVEACNDVQVEGVLRVEGSGPDTRIGFQSGAETMDDSTCVSCGHCATV 256

Query: 113 CPVDAIVE 120
           CP  ++ E
Sbjct: 257 CPTGSLTE 264



 Score = 35.1 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 20/67 (29%), Gaps = 11/67 (16%)

Query: 58  NGEERCIAC---KLCE--------AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
           N   RC  C     CE         +   +    +           +    ID  KCI C
Sbjct: 147 NHNLRCTTCSQNGRCELQDASIENGVEHPRYGVFDDRDAYEPIDDTSSFIQIDRNKCILC 206

Query: 107 GLCQEAC 113
             C EAC
Sbjct: 207 NRCVEAC 213


>gi|224369306|ref|YP_002603470.1| FdhB5 [Desulfobacterium autotrophicum HRM2]
 gi|223692023|gb|ACN15306.1| FdhB5 [Desulfobacterium autotrophicum HRM2]
          Length = 315

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 29/94 (30%), Gaps = 12/94 (12%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDG-- 89
           T+  PF+      +   +     +    + CI C  C   CP     T            
Sbjct: 175 TLEDPFKDVKAIEQMDDDQRWNHFETLLDGCIRCYACRNACPLCYCPTCFVDESNPQWVG 234

Query: 90  ---------TRRTVRYDIDMIKCIYCGLCQEACP 114
                    T   +R      +C  CG C+EACP
Sbjct: 235 KGQDPSDVRTFHFLRAYHCAGRCTDCGACEEACP 268


>gi|224367324|ref|YP_002601487.1| Fdx4 [Desulfobacterium autotrophicum HRM2]
 gi|223690040|gb|ACN13323.1| Fdx4 [Desulfobacterium autotrophicum HRM2]
          Length = 143

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 3/62 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + C+AC +C   CP  AI ++            +    +  +CI CG C++ CPV AI
Sbjct: 76  DRKTCMACTICVEACPTGAICLDDPTSKDPHAYPALA---NEKRCIGCGFCEKECPVGAI 132

Query: 119 VE 120
             
Sbjct: 133 TM 134



 Score = 39.3 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 5/70 (7%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESG---PRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +    + CI C+ C  +CP  ++    G    R   G R    +D     C+ C +C EA
Sbjct: 32  HTIDTDLCIQCRACGTVCPTGSVEDNFGRIIQRVKPGQRLQPMFDRKT--CMACTICVEA 89

Query: 113 CPVDAIVEGP 122
           CP  AI    
Sbjct: 90  CPTGAICLDD 99



 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 22/61 (36%), Gaps = 10/61 (16%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 E CI C  C  ICP+ AIT E              + ID   CI C  C   CP
Sbjct: 1   MSFIINETCIGCGACTKICPSGAITGEKQE----------LHTIDTDLCIQCRACGTVCP 50

Query: 115 V 115
            
Sbjct: 51  T 51


>gi|160888258|ref|ZP_02069261.1| hypothetical protein BACUNI_00668 [Bacteroides uniformis ATCC 8492]
 gi|317480137|ref|ZP_07939247.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 4_1_36]
 gi|156862204|gb|EDO55635.1| hypothetical protein BACUNI_00668 [Bacteroides uniformis ATCC 8492]
 gi|316903684|gb|EFV25528.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 4_1_36]
          Length = 498

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 8/80 (10%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCI------ACKLCEAICPAQAITIESGPRCHDGTRRTV 94
              +   +    +      ++ CI       C  C   CP  AI +         + +  
Sbjct: 403 RPITKADKSSVQIGHAVWVKKNCIPLTDGVQCGNCARHCPTGAIQMVPSIPEDKDSPKIP 462

Query: 95  RYDIDMIKCIYCGLCQEACP 114
              I++ +CI CG C+  CP
Sbjct: 463 V--INVERCIGCGACENLCP 480



 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 25/91 (27%), Gaps = 4/91 (4%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +    S   R                 C  C  +CPA AI   +             
Sbjct: 360 CPNQVLRPSADLRKLMQPEMSYERGYCRPECTKCSEVCPAGAIRPITKADKSSVQIGHAV 419

Query: 96  Y----DIDMIKCIYCGLCQEACPVDAIVEGP 122
           +     I +   + CG C   CP  AI   P
Sbjct: 420 WVKKNCIPLTDGVQCGNCARHCPTGAIQMVP 450



 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 13/72 (18%)

Query: 47  FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
           F   ++L R     E+C  C LC   C A  I  +              + ID  +C+ C
Sbjct: 211 FLSRYSLFRITIDSEKCNQCSLCSRNCKAACINFKE-------------HQIDASRCVVC 257

Query: 107 GLCQEACPVDAI 118
             C E C   AI
Sbjct: 258 MNCIEKCKHGAI 269



 Score = 34.3 bits (77), Expect = 5.4,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 3/62 (4%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            N  + C AC+LC + CP Q +   +  R       +        +C     C E CP  
Sbjct: 344 CNMAQHCTACQLCVSACPNQVLRPSADLRKLMQPEMSYERGYCRPECTK---CSEVCPAG 400

Query: 117 AI 118
           AI
Sbjct: 401 AI 402


>gi|125534698|gb|EAY81246.1| hypothetical protein OsI_36424 [Oryza sativa Indica Group]
          Length = 474

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           K C   C      +++G  C + T  +    I    CI CG+C + CP DAI    
Sbjct: 19  KKCRQECKKSCPVVKTGKLCIEVTPASKLAFISEELCIGCGICVKKCPFDAIEIIN 74


>gi|78189543|ref|YP_379881.1| heterodisulfide reductase, subunit A/hydrogenase, delta subunit,
           putative [Chlorobium chlorochromatii CaD3]
 gi|78171742|gb|ABB28838.1| putative adenylylsulfate reductase-associated electron transfer
           protein QmoB [Chlorobium chlorochromatii CaD3]
          Length = 750

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 20/63 (31%), Gaps = 10/63 (15%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            E C  C+ C   CP  A   ES                   +C  CG+C  ACP   I 
Sbjct: 544 FESCTQCRRCTVECPFGAYDEESNGTPLQ----------YPSRCRRCGVCMGACPQRVIS 593

Query: 120 EGP 122
              
Sbjct: 594 FKD 596


>gi|20089551|ref|NP_615626.1| ferredoxin [Methanosarcina acetivorans C2A]
 gi|19914464|gb|AAM04106.1| Na+-transporting NADH:ubiquinone oxidoreductase, subunit 6
           (predicted alternative beta subunit) [Methanosarcina
           acetivorans C2A]
          Length = 264

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 24/58 (41%), Gaps = 11/58 (18%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           CI CK CE  CPA AI +                +ID  KC  CG C   CP  AI  
Sbjct: 217 CIGCKKCEKECPAGAIRVTE-----------FLAEIDQEKCTACGACVAICPQKAIEL 263



 Score = 37.8 bits (86), Expect = 0.55,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 5/68 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEAC 113
            +  C +C  C A CP   +T                +      +  + CI C  C++ C
Sbjct: 168 NKALCTSCGNCIAACPNGVLTFARDSEKVHVLCRSHDKGKDVKAVCEVGCIGCKKCEKEC 227

Query: 114 PVDAIVEG 121
           P  AI   
Sbjct: 228 PAGAIRVT 235


>gi|134299190|ref|YP_001112686.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
            [Desulfotomaculum reducens MI-1]
 gi|134051890|gb|ABO49861.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
            [Desulfotomaculum reducens MI-1]
          Length = 1481

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 29/88 (32%), Gaps = 22/88 (25%)

Query: 59   GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              E C  C +C + C   A  ++                +  + C  CG C  ACP  A 
Sbjct: 1412 DTELCKGCGICVSACVYGARVLDERKGIAL---------VREVLCQGCGACVAACPSGA- 1461

Query: 119  VEGPNFEFATETRQELYYDKERLLNNGD 146
             +   FE            K++LL   D
Sbjct: 1462 TQQKGFE------------KQQLLAMMD 1477



 Score = 37.4 bits (85), Expect = 0.69,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 3/63 (4%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
           E I  A+   ++  P             ID+ KC  CG C  ACPV+       F    +
Sbjct: 81  EIITGAKIKDVDGEPGNFKVKIHQKARYIDIAKCTGCGDCARACPVE---LPNEFNGNID 137

Query: 130 TRQ 132
           TR+
Sbjct: 138 TRK 140


>gi|124265530|ref|YP_001019534.1| formate dehydrogenase subunit alpha [Methylibium petroleiphilum
           PM1]
 gi|124258305|gb|ABM93299.1| formate dehydrogenase, alpha subunit [Methylibium petroleiphilum
           PM1]
          Length = 955

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 3/64 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---YDIDMIKCIYCGLCQEACPV 115
             + CI C  C   C  +      G        +        +    C+ CG C +ACP 
Sbjct: 157 NLDACIQCTRCLRACRDEQGNDVIGLAFRGAHAQITFDAGATLGESSCVACGECVQACPT 216

Query: 116 DAIV 119
            A++
Sbjct: 217 GALM 220


>gi|110347101|ref|YP_665919.1| cytochrome b/b6-like [Mesorhizobium sp. BNC1]
 gi|110283212|gb|ABG61272.1| cytochrome b/b6-like protein [Chelativorans sp. BNC1]
          Length = 535

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 6/73 (8%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
              P FR   A          C  C  C   CP +AI +           +    ++   
Sbjct: 297 PWLPPFRRAPA---ATVDLPNCNGCNRCVEDCPYEAIRLVPRTDGEPFPHQA---EVSTD 350

Query: 102 KCIYCGLCQEACP 114
            C+ CG+C  +CP
Sbjct: 351 LCVSCGICMGSCP 363



 Score = 35.5 bits (80), Expect = 2.3,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 18/48 (37%)

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
               T+ +        RR     +D+  C  C  C E CP +AI   P
Sbjct: 287 VGVSTMLAAMPWLPPFRRAPAATVDLPNCNGCNRCVEDCPYEAIRLVP 334


>gi|312136954|ref|YP_004004291.1| 4fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermus fervidus DSM 2088]
 gi|311224673|gb|ADP77529.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermus fervidus DSM 2088]
          Length = 412

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            EE+CI C +C   CP       SG +    +R    + +D  +CI C  C E CP   I
Sbjct: 173 DEEKCIKCGICAQTCPWN-SVYISGKKPQKRSRTIENFTLDKEECIGCNTCVEICPGGFI 231



 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 1/65 (1%)

Query: 60  EERCIACKLCEAICPAQAIT-IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              C  C  C  +CP  A+  +E   + +  T +  R   +   C  CG C + CP   +
Sbjct: 321 YTICTTCGACTTVCPTGALKLVEVSKKVNGETVKRNRIQYNPSLCDKCGNCVDVCPYGIL 380

Query: 119 VEGPN 123
               +
Sbjct: 381 KLTDD 385



 Score = 42.4 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            C+ C+ C  +CP + I IE          +  +  I ++ C+ CGLC   CPV+AI  
Sbjct: 106 FCVLCQQCVNVCPIEVIGIEGVKEPARVEIKIDKP-IYIVDCVGCGLCVPECPVNAITL 163



 Score = 42.0 bits (97), Expect = 0.029,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 22/63 (34%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
             +E C  C  C   CP +AI + S         + V        C  CG C   CP  A
Sbjct: 279 YNDENCKFCGRCALNCPNEAIRVVSPKGRVFPGLKKVDEKESYTICTTCGACTTVCPTGA 338

Query: 118 IVE 120
           +  
Sbjct: 339 LKL 341



 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 10/80 (12%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE- 120
            C+ C LC   CP  AIT+          +     +ID  KCI CG+C + CP +++   
Sbjct: 145 DCVGCGLCVPECPVNAITL---------PKYGESIEIDEEKCIKCGICAQTCPWNSVYIS 195

Query: 121 GPNFEFATETRQELYYDKER 140
           G   +  + T +    DKE 
Sbjct: 196 GKKPQKRSRTIENFTLDKEE 215



 Score = 37.4 bits (85), Expect = 0.73,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 25/75 (33%), Gaps = 5/75 (6%)

Query: 52  ALRRYPNGEERCIACK---LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           A+   P     C  C     C   CP  A+  E      +G  +  +      KC  CG 
Sbjct: 23  AISVKPEDVIYCDMCGGEPKCVEACPNDALRHED--ITLEGGIKKKKITYSPEKCDKCGE 80

Query: 109 CQEACPVDAIVEGPN 123
           C + CP   +    +
Sbjct: 81  CVKVCPPGILKLVND 95



 Score = 37.0 bits (84), Expect = 0.98,   Method: Composition-based stats.
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 1/59 (1%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E C AC LCE +CP  AI +E                 +   C +CG C   CP +AI
Sbjct: 242 PEICPACGLCEKLCPTDAIELE-VKLGPAKPVTEEGIVYNDENCKFCGRCALNCPNEAI 299



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 13/26 (50%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPN 123
           I+   CI CG CQ  CP  AI   P 
Sbjct: 4   INKEDCIRCGACQGVCPTGAISVKPE 29


>gi|297619557|ref|YP_003707662.1| NIL domain-containing protein [Methanococcus voltae A3]
 gi|297378534|gb|ADI36689.1| NIL domain protein [Methanococcus voltae A3]
          Length = 132

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 10/62 (16%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E+CI C  C   CP  AI  E           +V +DI   +CI C  C + CP  AI+ 
Sbjct: 80  EKCIDCGACIVHCPVGAIKFEED--------FSVAFDI--DECIGCKTCAKICPTKAIIV 129

Query: 121 GP 122
             
Sbjct: 130 HD 131



 Score = 37.4 bits (85), Expect = 0.70,   Method: Composition-based stats.
 Identities = 13/30 (43%), Positives = 15/30 (50%)

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
             KCI CG C   CPV AI    +F  A +
Sbjct: 79  EEKCIDCGACIVHCPVGAIKFEEDFSVAFD 108


>gi|256840003|ref|ZP_05545512.1| ferredoxin 2 [Parabacteroides sp. D13]
 gi|256738933|gb|EEU52258.1| ferredoxin 2 [Parabacteroides sp. D13]
          Length = 459

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 11/61 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +RCI C  C   CP  AI I  G                   C+ CG C ++CP +AI
Sbjct: 13  DNDRCIGCTHCMKECPTGAIRIRDGKALIHKDW-----------CVDCGECLKSCPTEAI 61

Query: 119 V 119
            
Sbjct: 62  Y 62



 Score = 34.7 bits (78), Expect = 4.0,   Method: Composition-based stats.
 Identities = 10/25 (40%), Positives = 12/25 (48%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           ID  +CI C  C + CP  AI    
Sbjct: 12  IDNDRCIGCTHCMKECPTGAIRIRD 36


>gi|261402917|ref|YP_003247141.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus vulcanius M7]
 gi|261369910|gb|ACX72659.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus vulcanius M7]
          Length = 82

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 7/68 (10%)

Query: 60  EERCIACKLCEAICPAQAITIE-SGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112
            E+C  C  C   CP  A   E  G +        +R +      I+   C  CG C EA
Sbjct: 10  REKCHGCGNCVIACPVNAKNPETWGGKGPYSDDVVIRVENGAVAIINKDLCGGCGACIEA 69

Query: 113 CPVDAIVE 120
           CPV AI  
Sbjct: 70  CPVGAIEL 77


>gi|187780016|ref|ZP_02996489.1| hypothetical protein CLOSPO_03612 [Clostridium sporogenes ATCC
           15579]
 gi|187773641|gb|EDU37443.1| hypothetical protein CLOSPO_03612 [Clostridium sporogenes ATCC
           15579]
          Length = 425

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 3/69 (4%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              ++RC+ C  C  +CP +A               +   ++    C+ CG+C + C  +
Sbjct: 288 NINKDRCVGCGKCTKVCPMEA---IKLKETSLENHNSKIAELSEDLCLGCGVCVKNCKTN 344

Query: 117 AIVEGPNFE 125
           AI      E
Sbjct: 345 AIKLVRRKE 353



 Score = 40.9 bits (94), Expect = 0.063,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 6/64 (9%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           PN    C  C  CEA   A+                +   +I+  +C+ CG C + CP++
Sbjct: 254 PNFICNCCKC-HCEAFVSAK-----KFGFLVPVNTTSYLPNINKDRCVGCGKCTKVCPME 307

Query: 117 AIVE 120
           AI  
Sbjct: 308 AIKL 311


>gi|169335612|ref|ZP_02862805.1| hypothetical protein ANASTE_02032 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258350|gb|EDS72316.1| hypothetical protein ANASTE_02032 [Anaerofustis stercorihominis DSM
           17244]
          Length = 56

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 11/63 (17%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + CI+C  C   CP  AI+   G            Y+ID   CI CG C  ACP
Sbjct: 1   MAHVITDECISCGACAGECPVGAISEGDGK-----------YEIDAATCIDCGACAGACP 49

Query: 115 VDA 117
             A
Sbjct: 50  TGA 52


>gi|168180011|ref|ZP_02614675.1| iron-sulfur cluster-binding protein [Clostridium botulinum NCTC
           2916]
 gi|182668962|gb|EDT80938.1| iron-sulfur cluster-binding protein [Clostridium botulinum NCTC
           2916]
          Length = 425

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 3/69 (4%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              ++RC+ C  C  +CP +A               +   ++    C+ CG+C + C  +
Sbjct: 288 NINKDRCVGCGKCTKVCPMEA---IKLKETSLENHNSKIAELSEDLCLGCGVCVKNCKTN 344

Query: 117 AIVEGPNFE 125
           AI      E
Sbjct: 345 AIKLVRRKE 353



 Score = 40.9 bits (94), Expect = 0.063,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 6/64 (9%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           PN    C  C  CEA   A+                +   +I+  +C+ CG C + CP++
Sbjct: 254 PNFICNCCKC-HCEAFVSAK-----KFGFLVPVNTTSYLPNINKDRCVGCGKCTKVCPME 307

Query: 117 AIVE 120
           AI  
Sbjct: 308 AIKL 311


>gi|167767872|ref|ZP_02439925.1| hypothetical protein CLOSS21_02409 [Clostridium sp. SS2/1]
 gi|167710611|gb|EDS21190.1| hypothetical protein CLOSS21_02409 [Clostridium sp. SS2/1]
          Length = 1173

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/103 (18%), Positives = 28/103 (27%), Gaps = 20/103 (19%)

Query: 31  KTTINYPFEKGSTS-----PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
           K +   P+  G           RG        N  + CI C  C  +CP   I   +   
Sbjct: 655 KVSDLMPYVDGHMPLGASAFEKRGVAVDVPSWN-PDNCIQCNFCAYVCPHATIRPVAMTE 713

Query: 86  CHDGTR--------------RTVRYDIDMIKCIYCGLCQEACP 114
                                     + ++ C+ CG C   CP
Sbjct: 714 EEAAAAPAATKTADMTGMPGYKFAMTVTVLDCLGCGSCVNICP 756


>gi|148379320|ref|YP_001253861.1| iron-sulfur cluster-binding protein [Clostridium botulinum A str.
           ATCC 3502]
 gi|153931703|ref|YP_001383696.1| iron-sulfur cluster-binding protein [Clostridium botulinum A str.
           ATCC 19397]
 gi|153935168|ref|YP_001387244.1| iron-sulfur cluster-binding protein [Clostridium botulinum A str.
           Hall]
 gi|153939701|ref|YP_001390706.1| iron-sulfur cluster-binding protein [Clostridium botulinum F str.
           Langeland]
 gi|226948623|ref|YP_002803714.1| iron-sulfur cluster-binding protein [Clostridium botulinum A2 str.
           Kyoto]
 gi|148288804|emb|CAL82888.1| putative iron-sulfur cluster binding protein [Clostridium botulinum
           A str. ATCC 3502]
 gi|152927747|gb|ABS33247.1| iron-sulfur cluster-binding protein [Clostridium botulinum A str.
           ATCC 19397]
 gi|152931082|gb|ABS36581.1| iron-sulfur cluster-binding protein [Clostridium botulinum A str.
           Hall]
 gi|152935597|gb|ABS41095.1| iron-sulfur cluster-binding protein [Clostridium botulinum F str.
           Langeland]
 gi|226843047|gb|ACO85713.1| iron-sulfur cluster-binding protein [Clostridium botulinum A2 str.
           Kyoto]
 gi|295318780|gb|ADF99157.1| iron-sulfur cluster-binding protein [Clostridium botulinum F str.
           230613]
 gi|322805661|emb|CBZ03226.1| ferredoxin [Clostridium botulinum H04402 065]
          Length = 425

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 3/69 (4%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              ++RC+ C  C  +CP +A               +   ++    C+ CG+C + C  +
Sbjct: 288 NINKDRCVGCGKCTKVCPMEA---IKLKETSLENHNSKIAELSEDLCLGCGVCVKNCKTN 344

Query: 117 AIVEGPNFE 125
           AI      E
Sbjct: 345 AIKLVRRKE 353



 Score = 40.9 bits (94), Expect = 0.063,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 6/64 (9%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           PN    C  C  CEA   A+                +   +I+  +C+ CG C + CP++
Sbjct: 254 PNFICNCCKC-HCEAFVSAK-----KFGFLVPVNTTSYLPNINKDRCVGCGKCTKVCPME 307

Query: 117 AIVE 120
           AI  
Sbjct: 308 AIKL 311


>gi|220929867|ref|YP_002506776.1| hydrogenase, Fe-only [Clostridium cellulolyticum H10]
 gi|220000195|gb|ACL76796.1| hydrogenase, Fe-only [Clostridium cellulolyticum H10]
          Length = 574

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 59  GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQEACPV 115
              +C+ C  C ++C   Q ++             T  Y+  +   +CI CG C + CPV
Sbjct: 143 DPNKCVLCGRCVSVCSKIQDVSAIDFAFRGANMTVTTAYEEGLASQECINCGQCIKICPV 202

Query: 116 DAIVEGPNFE 125
            A+ E  + E
Sbjct: 203 GALQERDDTE 212


>gi|116750829|ref|YP_847516.1| cobyrinic acid a,c-diamide synthase [Syntrophobacter fumaroxidans
           MPOB]
 gi|116699893|gb|ABK19081.1| Cobyrinic acid a,c-diamide synthase [Syntrophobacter fumaroxidans
           MPOB]
          Length = 292

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 11/62 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ERC  C +C ++C   AI                 Y +D I+C  C +C   CP +AI
Sbjct: 64  DGERCTGCGVCASLCRFDAIREGERG-----------YTVDPIRCEGCKVCVAFCPAEAI 112

Query: 119 VE 120
             
Sbjct: 113 RF 114


>gi|300087835|ref|YP_003758357.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527568|gb|ADJ26036.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 1008

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 4/66 (6%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E C  C  C   CP  AI++        G ++TV  D    KC  CG+C   CP   I  
Sbjct: 933 ENCDGCAYCVDPCPYDAISLLEY-NFKGGLKKTVEAD--PAKCHGCGVCMATCPKKGI-M 988

Query: 121 GPNFEF 126
             NF  
Sbjct: 989 VKNFYL 994


>gi|291514608|emb|CBK63818.1| electron transport complex, RnfABCDGE type, B subunit [Alistipes
           shahii WAL 8301]
          Length = 299

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 27/86 (31%), Gaps = 11/86 (12%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            +P  +         +         +  CI C  C  +C   AIT+E+            
Sbjct: 193 KWPKNRAVYVSCVSKDKGAVVMKACKAGCIGCGKCVKVCAFDAITVENNLAY-------- 244

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVE 120
              ID  KC  C  C   CP  AI  
Sbjct: 245 ---IDPQKCKLCRKCVNECPTGAIRL 267



 Score = 37.0 bits (84), Expect = 0.80,   Method: Composition-based stats.
 Identities = 18/76 (23%), Positives = 25/76 (32%), Gaps = 8/76 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHD--------GTRRTVRYDIDMIKCIYCGLCQ 110
             ++C AC  C   CP   I +      +           +  V        CI CG C 
Sbjct: 169 DADKCTACGACVKACPKMIIELRKKWPKNRAVYVSCVSKDKGAVVMKACKAGCIGCGKCV 228

Query: 111 EACPVDAIVEGPNFEF 126
           + C  DAI    N  +
Sbjct: 229 KVCAFDAITVENNLAY 244



 Score = 37.0 bits (84), Expect = 0.82,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 9/60 (15%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+    C A+C   AI I                ++D  KC  CG C +ACP   I    
Sbjct: 142 CLGFGDCVAVCAFDAIHINPETGLP---------EVDADKCTACGACVKACPKMIIELRK 192


>gi|291280351|ref|YP_003497186.1| NADH-quinone oxidoreductase subunit G [Deferribacter desulfuricans
           SSM1]
 gi|290755053|dbj|BAI81430.1| NADH-quinone oxidoreductase, G subunit [Deferribacter desulfuricans
           SSM1]
          Length = 763

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/82 (21%), Positives = 25/82 (30%), Gaps = 3/82 (3%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
            EK + +P       + R  +   RC+ C  C  IC                        
Sbjct: 124 DEKPNNNPVDHTNPFIERDID---RCVLCGKCVRICDEIVNVEAISFINRGVETYIGTAF 180

Query: 98  IDMIKCIYCGLCQEACPVDAIV 119
                C YCG C   CPV ++ 
Sbjct: 181 DQPWNCEYCGQCMSVCPVGSLN 202


>gi|259417001|ref|ZP_05740921.1| dihydroorotate dehydrogenase family protein [Silicibacter sp.
           TrichCH4B]
 gi|259348440|gb|EEW60217.1| dihydroorotate dehydrogenase family protein [Silicibacter sp.
           TrichCH4B]
          Length = 434

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 8/76 (10%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           ++   + + +    ++ CI C  C A C       E              + +   +C+ 
Sbjct: 330 QYLDLNYVTKAKISQDDCIKCGRCFAAC-------EDTSHQAIAMSADRTFTVKDDECVA 382

Query: 106 CGLCQEACPVD-AIVE 120
           C LC   CPV+  I  
Sbjct: 383 CNLCVNVCPVEGCITM 398


>gi|269121726|ref|YP_003309903.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sebaldella
           termitidis ATCC 33386]
 gi|268615604|gb|ACZ09972.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sebaldella
           termitidis ATCC 33386]
          Length = 261

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 26/80 (32%), Gaps = 12/80 (15%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
           P       +   P   E C  C  C   CP  AI+ E+                   KCI
Sbjct: 172 PYKERSAGIVAAPETGEACYDCMKCAKECPVSAISFENPRIAD------------ANKCI 219

Query: 105 YCGLCQEACPVDAIVEGPNF 124
           +C  C +ACPV A       
Sbjct: 220 HCCACVKACPVKAKYFDNEM 239


>gi|237748005|ref|ZP_04578485.1| oxidoreductase iron-sulfur protein [Oxalobacter formigenes OXCC13]
 gi|229379367|gb|EEO29458.1| oxidoreductase iron-sulfur protein [Oxalobacter formigenes OXCC13]
          Length = 415

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 7/68 (10%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +      + +CI C  C   C         G +  D    T    I+  +C+ C LC   
Sbjct: 333 MVIPGIDQTKCIGCGRCYVSCFDG------GHQAIDWDEYTRTPTIN-NRCVGCHLCLNV 385

Query: 113 CPVDAIVE 120
           CPV+  + 
Sbjct: 386 CPVENCIL 393


>gi|296127181|ref|YP_003634433.1| hydrogenase, Fe-only [Brachyspira murdochii DSM 12563]
 gi|296018997|gb|ADG72234.1| hydrogenase, Fe-only [Brachyspira murdochii DSM 12563]
          Length = 582

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 22/67 (32%), Gaps = 2/67 (2%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPVD 116
             E+CI C  C  +C         G              + +    C+ CG C   CPV 
Sbjct: 143 NPEKCIKCGRCVVVCQEMQRVHALGFVNRGFDTYFAPSAVSLKDSPCVDCGQCAAHCPVA 202

Query: 117 AIVEGPN 123
           AI E   
Sbjct: 203 AIYEKDQ 209


>gi|254445715|ref|ZP_05059191.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Verrucomicrobiae
           bacterium DG1235]
 gi|198260023|gb|EDY84331.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Verrucomicrobiae
           bacterium DG1235]
          Length = 1195

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/73 (23%), Positives = 20/73 (27%), Gaps = 16/73 (21%)

Query: 58  NGEERCIACKLCEAICPAQAI----TIESGPRCHDGTRRTVRY------------DIDMI 101
              E C  C  C   CP  AI      ES         ++  Y             +   
Sbjct: 698 WDAETCTQCNKCSLFCPHAAIRPKIYCESELENAPQGFKSTAYNGPGAEDKAFTIQVYPQ 757

Query: 102 KCIYCGLCQEACP 114
            C  C  C E CP
Sbjct: 758 DCTGCNACVELCP 770


>gi|170760857|ref|YP_001787172.1| [Fe] hydrogenase [Clostridium botulinum A3 str. Loch Maree]
 gi|169407846|gb|ACA56257.1| iron hydrogenase 1 [Clostridium botulinum A3 str. Loch Maree]
          Length = 577

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 22/68 (32%), Gaps = 3/68 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIE---SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
             ++CI C+ C  IC            G              I    C +CG C   CP 
Sbjct: 149 DMDKCILCRRCITICNEVQTVGTLSAIGRGFETVVAPAFSEAIKNTNCTFCGQCVSVCPT 208

Query: 116 DAIVEGPN 123
            A+ E  N
Sbjct: 209 GALTEVNN 216


>gi|167761979|ref|ZP_02434106.1| hypothetical protein BACSTE_00324 [Bacteroides stercoris ATCC
           43183]
 gi|167700211|gb|EDS16790.1| hypothetical protein BACSTE_00324 [Bacteroides stercoris ATCC
           43183]
          Length = 277

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 21/76 (27%), Gaps = 12/76 (15%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G    R      E C  C  C   CPA AI                       KCI C  
Sbjct: 196 GVPMPRIPAVDTELCNHCGYCVKHCPAGAIVKGDECSTDV------------EKCIRCCA 243

Query: 109 CQEACPVDAIVEGPNF 124
           C + CP  A      F
Sbjct: 244 CVKGCPQKARTFDTPF 259


>gi|166030704|ref|ZP_02233533.1| hypothetical protein DORFOR_00378 [Dorea formicigenerans ATCC
           27755]
 gi|166029496|gb|EDR48253.1| hypothetical protein DORFOR_00378 [Dorea formicigenerans ATCC
           27755]
          Length = 56

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 11/66 (16%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + CI+C  CEA CP  AI+   G            Y+I+   CI CG C   CP
Sbjct: 1   MAHVIGDDCISCGSCEAECPVSAISEGDGK-----------YEINADACIDCGACAAQCP 49

Query: 115 VDAIVE 120
           V AI E
Sbjct: 50  VGAISE 55


>gi|218782885|ref|YP_002434203.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfatibacillum alkenivorans AK-01]
 gi|218764269|gb|ACL06735.1| Heterodisulfide reductase, subunit A-like protein
           [Desulfatibacillum alkenivorans AK-01]
          Length = 933

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 6/61 (9%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
              C  C +C ++CP  A +  +               I+ + C  CGLC  +C   AI 
Sbjct: 864 PANCSECGVCVSLCPYSAPSFTTEGPFAGKA------SINPVLCKGCGLCVASCRSGAIH 917

Query: 120 E 120
            
Sbjct: 918 L 918



 Score = 43.5 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 12/77 (15%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIE-------SGPRCHDGTRRTVRYDIDMIKCIY- 105
           +     ++ C+ C  C   CP +                        ++Y ID   CI  
Sbjct: 24  QPRYVDQDLCVGCGACAEKCPKKIPDDYNTGLSKRKAIYVEYAQAVPLKYAIDARYCIKL 83

Query: 106 ----CGLCQEACPVDAI 118
               CG C++ CP  AI
Sbjct: 84  QKDKCGNCEKVCPAGAI 100


>gi|150399747|ref|YP_001323514.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus vannielii SB]
 gi|150012450|gb|ABR54902.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           vannielii SB]
          Length = 658

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/87 (24%), Positives = 28/87 (32%), Gaps = 7/87 (8%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAIT-------IESGPRCHDGTRRTVRYDI 98
            F      +     E+ C  C  C + CP +                        + Y I
Sbjct: 229 NFEVTIEKKPRSVDEKTCTGCGACASACPIEVPNEFDLGLGTRKAIYVPFPQAVPLLYTI 288

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFE 125
           D   CI CGLC + C  DA+  G   E
Sbjct: 289 DKEHCIDCGLCAKVCCADAVRYGQKPE 315



 Score = 41.6 bits (96), Expect = 0.035,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 25/70 (35%), Gaps = 7/70 (10%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             + R    EE C  CK+C  +CP  AIT E            V        C  CG C 
Sbjct: 572 IEMIRATVNEEVCGGCKVCALMCPYNAITYEEKEGHLVAISDDVA-------CKGCGSCA 624

Query: 111 EACPVDAIVE 120
             CP  A+  
Sbjct: 625 AVCPSGAMQL 634


>gi|330506903|ref|YP_004383331.1| iron sulfur cluster/nucleotide binding domain-containing protein
           [Methanosaeta concilii GP-6]
 gi|328927711|gb|AEB67513.1| iron sulfur cluster/nucleotide binding domain protein [Methanosaeta
           concilii GP-6]
          Length = 287

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 22/63 (34%), Gaps = 11/63 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            EE C  C  C  +C   A+ +  G              I    C  CG C   CP  AI
Sbjct: 68  DEELCTHCGKCSEVCAYHALAVLPGTVL-----------IFPELCHGCGACSIICPEKAI 116

Query: 119 VEG 121
            EG
Sbjct: 117 SEG 119


>gi|326494394|dbj|BAJ90466.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326504534|dbj|BAJ91099.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326506398|dbj|BAJ86517.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 604

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           K C   C      +++G  C + +       I    CI CG+C + CP DAI    
Sbjct: 19  KKCRQECKKSCPVVKTGKLCIEVSPAAKLAFISEELCIGCGICVKKCPFDAIEIIN 74


>gi|317480172|ref|ZP_07939282.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 4_1_36]
 gi|316903719|gb|EFV25563.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 4_1_36]
          Length = 373

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 10/55 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
            E  CI C +C   C   A+ + +  +            ID  KC+ CG C   C
Sbjct: 192 DEASCIGCNICVKHCAHDAVHLNASRKAE----------IDYAKCVGCGQCVALC 236


>gi|303238681|ref|ZP_07325214.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Acetivibrio cellulolyticus CD2]
 gi|302593800|gb|EFL63515.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Acetivibrio cellulolyticus CD2]
          Length = 405

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 6/63 (9%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
                    +  C  C  C  IC  QAI++             +   I+   CI CG C+
Sbjct: 1   MEKIMLFKDKTDCCGCGACMNICAKQAISMREDEYG------FLYPVINETLCIRCGACK 54

Query: 111 EAC 113
           + C
Sbjct: 55  KVC 57


>gi|322436009|ref|YP_004218221.1| NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding
           protein [Acidobacterium sp. MP5ACTX9]
 gi|321163736|gb|ADW69441.1| NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding
           protein [Acidobacterium sp. MP5ACTX9]
          Length = 797

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/88 (21%), Positives = 27/88 (30%), Gaps = 10/88 (11%)

Query: 44  SPRFRGEHALRRYPN-GEERCIACKLCEAICPAQAITIESGPR---------CHDGTRRT 93
               R E            RCI C  C  +C         G +          +      
Sbjct: 128 PKNHREEQKWSPVVYFDRPRCILCYRCVRMCGEGMDVFALGIQNRGSSSIIAPNSPASEN 187

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEG 121
               +  + C  CG+C +ACPV A+  G
Sbjct: 188 PMDSLPHVDCEQCGMCIDACPVGALTSG 215


>gi|225175583|ref|ZP_03729577.1| Electron transfer flavoprotein alpha/beta-subunit [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168912|gb|EEG77712.1| Electron transfer flavoprotein alpha/beta-subunit [Dethiobacter
           alkaliphilus AHT 1]
          Length = 400

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 11/58 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + CI C+ C   CP                       +   KC  CG C +ACP DAI
Sbjct: 8   DECIGCEACIDACPFPGAVEMKDDVA-----------VLTDKCTGCGACADACPSDAI 54



 Score = 35.5 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 1/27 (3%)

Query: 98  IDMIKCIYCGLCQEACPVD-AIVEGPN 123
           I + +CI C  C +ACP   A+    +
Sbjct: 5   IIVDECIGCEACIDACPFPGAVEMKDD 31


>gi|225017719|ref|ZP_03706911.1| hypothetical protein CLOSTMETH_01648 [Clostridium methylpentosum
           DSM 5476]
 gi|224949512|gb|EEG30721.1| hypothetical protein CLOSTMETH_01648 [Clostridium methylpentosum
           DSM 5476]
          Length = 436

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 29/105 (27%), Gaps = 6/105 (5%)

Query: 15  EFVGAFFLCLRYFF--KAKTTINYPFEKGSTSPRFRGEHALRRY---PNGEERCIACKLC 69
           +F G F    +          +                 AL            CI C  C
Sbjct: 313 DFCGGFKKTPKKILCGGPMMGVALLDTSTPVIKNNNAILALSSDVLLDQPTTACIRCGKC 372

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
              CP   +   S  + +D     +   + +  CI CG C   CP
Sbjct: 373 IGACPVH-LMPVSIEKAYDAQDVEMLQKLSVNLCINCGCCSYVCP 416



 Score = 35.1 bits (79), Expect = 3.0,   Method: Composition-based stats.
 Identities = 10/20 (50%), Positives = 10/20 (50%)

Query: 97  DIDMIKCIYCGLCQEACPVD 116
           D     CI CG C  ACPV 
Sbjct: 360 DQPTTACIRCGKCIGACPVH 379


>gi|119899774|ref|YP_934987.1| iron-sulfur cluster-binding protein [Azoarcus sp. BH72]
 gi|119672187|emb|CAL96101.1| conserved hypothetical iron-sulfur cluster-binding protein
           [Azoarcus sp. BH72]
          Length = 701

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 9/60 (15%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C  C  C   CPA A+              + R D     C+ CGLC  +CP  A+   P
Sbjct: 569 CTLCMACTGACPAGALRAAGD---------SYRLDFIEKNCLQCGLCVSSCPETALSLQP 619



 Score = 35.5 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 11/49 (22%), Positives = 16/49 (32%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                +      +G              ID+  C+ C  C +ACP  AI
Sbjct: 170 AYPVWSGQARSLTGHLGAFELAWEQHNPIDLDLCVRCHACVKACPEGAI 218



 Score = 35.1 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 18/53 (33%), Gaps = 11/53 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C  +C  +AI  +                +D   C  CG C   CP  A+
Sbjct: 326 CNNCIEVCSTEAIRADGN-----------VITVDPYLCKGCGTCSTVCPSGAL 367


>gi|77919712|ref|YP_357527.1| indolepyruvate oxidoreductase subunit alpha [Pelobacter
           carbinolicus DSM 2380]
 gi|77545795|gb|ABA89357.1| indolepyruvate oxidoreductase, alpha subunit [Pelobacter
           carbinolicus DSM 2380]
          Length = 613

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 9/62 (14%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            C  C+ C       A+  +           + R  ID   C+ CG+C+  CP  AI   
Sbjct: 559 ECNGCRYCIKAFECPALVYDE---------PSGRVCIDNDLCVGCGVCERVCPRGAIHNQ 609

Query: 122 PN 123
             
Sbjct: 610 GE 611


>gi|119992|sp|P00197|FER_CLOSM RecName: Full=Ferredoxin
 gi|65699|pir||FECLCE ferredoxin 2[4Fe-4S] - Clostridium sp
          Length = 55

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/59 (45%), Positives = 29/59 (49%), Gaps = 11/59 (18%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           CI C  CE  CP +AI+     R            ID  KCI CG C   CPVDAIVEG
Sbjct: 8   CINCGACEPECPVEAISESDAVRV-----------IDADKCIDCGACANTCPVDAIVEG 55


>gi|330999297|ref|ZP_08323014.1| putative ferredoxin-type protein NapH [Parasutterella
           excrementihominis YIT 11859]
 gi|329575155|gb|EGG56706.1| putative ferredoxin-type protein NapH [Parasutterella
           excrementihominis YIT 11859]
          Length = 295

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 8/73 (10%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G+  L +     + C  C  C  +C          P+  +  +          +C  CG 
Sbjct: 220 GKIGLTKVKFDNDTCTRCGDCIKVC--------PEPQVINFKKAAEVGMYASGECTNCGK 271

Query: 109 CQEACPVDAIVEG 121
           C   CP +++  G
Sbjct: 272 CVSICPENSLNFG 284



 Score = 36.6 bits (83), Expect = 1.1,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 15/53 (28%), Gaps = 6/53 (11%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
                C  +CP  A           G     +   D   C  CG C + CP  
Sbjct: 201 TKRGWCGHLCPLGAFW------ALWGKIGLTKVKFDNDTCTRCGDCIKVCPEP 247


>gi|328948664|ref|YP_004366001.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Treponema succinifaciens DSM 2489]
 gi|328448988|gb|AEB14704.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Treponema succinifaciens DSM 2489]
          Length = 56

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 11/60 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             CI C  CE  CP++AI+  +  R            I+   C+ CG C   CPV AI E
Sbjct: 7   SDCINCGACEGECPSEAISEVNDKR-----------QINADNCVSCGSCASVCPVGAISE 55


>gi|312792686|ref|YP_004025609.1| hypothetical protein Calkr_0447 [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179826|gb|ADQ39996.1| protein of unknown function DUF362 [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 375

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 11/62 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI C  C   CPAQAI ++S               +D+ KCI C  C E CP  AI
Sbjct: 314 DRNICIGCAECFNACPAQAIEMKSRKAY-----------VDLKKCIRCYCCHELCPAKAI 362

Query: 119 VE 120
             
Sbjct: 363 KI 364


>gi|297618262|ref|YP_003703421.1| electron transfer flavoprotein alpha/beta-subunit [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297146099|gb|ADI02856.1| Electron transfer flavoprotein alpha/beta-subunit [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 394

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 23/67 (34%), Gaps = 12/67 (17%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                E  CI C +C   CP  +IT+ +                    C  CG C   CP
Sbjct: 1   MITIDETLCIGCGICVETCPFGSITLVNNVPVV------------SDTCTLCGSCAHDCP 48

Query: 115 VDAIVEG 121
           V AIV  
Sbjct: 49  VGAIVIT 55



 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/29 (41%), Positives = 14/29 (48%)

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
              ID   CI CG+C E CP  +I    N
Sbjct: 1   MITIDETLCIGCGICVETCPFGSITLVNN 29


>gi|283782252|ref|YP_003373007.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Pirellula staleyi DSM 6068]
 gi|283440705|gb|ADB19147.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pirellula
           staleyi DSM 6068]
          Length = 397

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/114 (21%), Positives = 30/114 (26%), Gaps = 15/114 (13%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC-IYCGLCQEA 112
                   RC  C  C   C      ++         R           C   C  C   
Sbjct: 250 WYPVIDYSRCTNCMECIDFCLFGVYGVD---------RVDTILVEQPDNCRKGCPACSRV 300

Query: 113 CPVDAI----VEGPNFEFATETRQELYYDKERLLNNGDRWE-SEIVRNIVTDSP 161
           CP +AI     + PN   A      L  D  +L    D  E +E V     D  
Sbjct: 301 CPENAIIFPQHKTPNIAGAPVIVGSLKIDLSKLFGAPDTGETAEEVAIRERDEQ 354


>gi|302384120|ref|YP_003819943.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brevundimonas subvibrioides ATCC 15264]
 gi|302194748|gb|ADL02320.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Brevundimonas subvibrioides ATCC 15264]
          Length = 133

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 28/88 (31%), Gaps = 13/88 (14%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           G     F+    L       + C+ C    C  +CP                       I
Sbjct: 7   GPFVHPFKTPIFLPMTYIVTDACVKCKFMDCIEVCPVDCFYEGEN-----------FLAI 55

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEF 126
              +CI CG+C+  CPVDAI      E 
Sbjct: 56  APDECIDCGVCEPECPVDAIKPDTEDEP 83


>gi|257462466|ref|ZP_05626878.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium sp. D12]
 gi|317060123|ref|ZP_07924608.1| nitrogen fixation iron-sulfur protein RNFC [Fusobacterium sp. D12]
 gi|313685799|gb|EFS22634.1| nitrogen fixation iron-sulfur protein RNFC [Fusobacterium sp. D12]
          Length = 436

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 31/92 (33%), Gaps = 9/92 (9%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEER---CIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
           E+        G  AL +      +   CI C  C + CP   +      R     +    
Sbjct: 338 EEAPVIKGTSGLLALTKEETNPYKPKACIGCGKCVSACPMS-LEPVMFARLAAFQQWEGL 396

Query: 96  YDIDMIKCIYCGLCQEACP-----VDAIVEGP 122
            +  ++ CI CG C   CP      +AI  G 
Sbjct: 397 QNYHLMDCIECGSCAFICPANRPLTEAIKIGK 428


>gi|289579324|ref|YP_003477951.1| PAS/PAC sensor protein [Thermoanaerobacter italicus Ab9]
 gi|289529037|gb|ADD03389.1| putative PAS/PAC sensor protein [Thermoanaerobacter italicus Ab9]
          Length = 576

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 24/67 (35%), Gaps = 11/67 (16%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             L      +  C  C  C   CP +AI +  G             ++    CIYCG C 
Sbjct: 1   MILDVISVSKANCKNCYRCVRHCPVKAIKVVGGQA-----------EVVDSLCIYCGRCV 49

Query: 111 EACPVDA 117
             CP +A
Sbjct: 50  IECPQNA 56


>gi|227828353|ref|YP_002830133.1| hypothetical protein M1425_2095 [Sulfolobus islandicus M.14.25]
 gi|227460149|gb|ACP38835.1| conserved hypothetical protein [Sulfolobus islandicus M.14.25]
          Length = 619

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRC-HDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              CI C  C ++CP    T +         +      + D+  C  CGLC++ CPV 
Sbjct: 284 FNGCILCGKCVSVCPYGEQTNDIFHTPLGFYSISYFEKENDLANCHMCGLCEQVCPVR 341



 Score = 35.1 bits (79), Expect = 3.0,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 9/46 (19%)

Query: 103 CIYCGLCQEACP----VDAIVEGPNFEFATETRQELYYDKERLLNN 144
           CI CG C   CP     + I   P       +    Y++KE  L N
Sbjct: 287 CILCGKCVSVCPYGEQTNDIFHTP---LGFYSIS--YFEKENDLAN 327


>gi|227831110|ref|YP_002832890.1| hypothetical protein LS215_2260 [Sulfolobus islandicus L.S.2.15]
 gi|229579995|ref|YP_002838395.1| hypothetical protein YG5714_2224 [Sulfolobus islandicus Y.G.57.14]
 gi|284998609|ref|YP_003420377.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Sulfolobus
           islandicus L.D.8.5]
 gi|227457558|gb|ACP36245.1| conserved hypothetical protein [Sulfolobus islandicus L.S.2.15]
 gi|228010711|gb|ACP46473.1| conserved hypothetical protein [Sulfolobus islandicus Y.G.57.14]
 gi|284446505|gb|ADB88007.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Sulfolobus
           islandicus L.D.8.5]
          Length = 619

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRC-HDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              CI C  C ++CP    T +         +      + D+  C  CGLC++ CPV 
Sbjct: 284 FNGCILCGKCVSVCPYGEQTNDVFHTPLGFYSISYFEKENDLANCHMCGLCEQVCPVR 341


>gi|220904626|ref|YP_002479938.1| glycyl-radical enzyme activating protein family [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219868925|gb|ACL49260.1| glycyl-radical enzyme activating protein family [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 310

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 8/58 (13%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C+ C  C  +CP    ++ +   CH   R           CI CG C  ACP  A+
Sbjct: 55  DICVHCGACVPVCPVGIHSMTNAGSCHVVDR--------SKDCINCGKCVHACPEAAL 104



 Score = 33.9 bits (76), Expect = 7.9,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 16/50 (32%), Gaps = 4/50 (8%)

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CP +     +            + DI    C++CG C   CPV       
Sbjct: 31  CPLRCQWCSNPESQTRRFEVLFKKDI----CVHCGACVPVCPVGIHSMTN 76


>gi|192288570|ref|YP_001989175.1| hydrogenase, Fe-only [Rhodopseudomonas palustris TIE-1]
 gi|192282319|gb|ACE98699.1| hydrogenase, Fe-only [Rhodopseudomonas palustris TIE-1]
          Length = 619

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 36/118 (30%), Gaps = 14/118 (11%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           L++      L    FF  + T + P +  S S                 RC+ C+ C AI
Sbjct: 131 LQDLAQFVGLQQNRFFDRERTESRPVDHSSPS-----------MVRDMRRCVRCQRCVAI 179

Query: 73  CPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           C                 R     D        C+ CG C   CP  A+ E    + A
Sbjct: 180 CRYHQKIDALAIEGSGLERMVALRDADGYPNSVCVSCGQCVLVCPTGALGERDETDRA 237


>gi|153811524|ref|ZP_01964192.1| hypothetical protein RUMOBE_01916 [Ruminococcus obeum ATCC 29174]
 gi|149832265|gb|EDM87350.1| hypothetical protein RUMOBE_01916 [Ruminococcus obeum ATCC 29174]
          Length = 204

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 11/58 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + CI CKLC ++CP + I I S P             I+   C++CG C E CP   I
Sbjct: 152 KECIGCKLCCSVCPQKCIDISSVPV-----------TINQNHCLHCGRCAEICPKQCI 198


>gi|148244257|ref|YP_001218951.1| adenylylsulfate reductase beta subunit [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146326084|dbj|BAF61227.1| adenylylsulfate reductase beta subunit [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 159

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
             RC  C  C  ICP+  + I+         +    Y+I+   C  C  C +ACP  AI 
Sbjct: 7   MTRCDGCGHCVDICPSDIMHIDD--------KYRRAYNIEPNMCWECYSCVKACPHQAID 58

Query: 120 EGPNFEFA 127
                +FA
Sbjct: 59  VRGYADFA 66


>gi|156742145|ref|YP_001432274.1| cyclic nucleotide-binding protein [Roseiflexus castenholzii DSM
           13941]
 gi|156233473|gb|ABU58256.1| cyclic nucleotide-binding protein [Roseiflexus castenholzii DSM
           13941]
          Length = 565

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/121 (19%), Positives = 32/121 (26%), Gaps = 10/121 (8%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
           R +   V      +    F +              P            + A        +
Sbjct: 35  RTWVKYVETGTFPDTRRHFQVT------RCNHCANPPCVRICPVTAMYQRADGIVEFDPK 88

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            CI CK C   CP  AI I+   R               +K      C+  CP  AI+ G
Sbjct: 89  ACIGCKACLQACPYDAIYIDPETRSAAKCHFCSHRIELGLK----PACEVVCPEQAIISG 144

Query: 122 P 122
            
Sbjct: 145 D 145



 Score = 42.0 bits (97), Expect = 0.028,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 7/68 (10%)

Query: 59  GEERCIACKLCEAICPAQA-----ITIESGPRCHDGTRRTVRYDIDMIKCIYCGL--CQE 111
              +CI C  C   C ++      +          GT    R    + +C +C    C  
Sbjct: 9   DHRKCIGCHACSTACKSENEVPLGVYRTWVKYVETGTFPDTRRHFQVTRCNHCANPPCVR 68

Query: 112 ACPVDAIV 119
            CPV A+ 
Sbjct: 69  ICPVTAMY 76



 Score = 42.0 bits (97), Expect = 0.028,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 19/60 (31%), Gaps = 5/60 (8%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
             C  C          +   P      R     + D   CI C  C +ACP DAI   P 
Sbjct: 56  TRCNHCA-----NPPCVRICPVTAMYQRADGIVEFDPKACIGCKACLQACPYDAIYIDPE 110


>gi|84388509|ref|ZP_00991056.1| anaerobic dehydrogenase [Vibrio splendidus 12B01]
 gi|84377058|gb|EAP93929.1| anaerobic dehydrogenase [Vibrio splendidus 12B01]
          Length = 1409

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 24/71 (33%), Gaps = 11/71 (15%)

Query: 59  GEERCIACKLCEAICPAQ--------AITIESGPRCHDGTRRTVRYD---IDMIKCIYCG 107
              RCI+C  C   C  Q            +  P      R     D   +    C+ CG
Sbjct: 637 DANRCISCGQCIQACREQNVHGVLSFMNQSDGKPASRPECRPNFGADKTLMGDSNCVQCG 696

Query: 108 LCQEACPVDAI 118
            C +ACP  A+
Sbjct: 697 SCIQACPTGAM 707



 Score = 35.5 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 23/72 (31%), Gaps = 8/72 (11%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P  +    P F  +  L    N    C+ C  C   CP  A+      +  D        
Sbjct: 670 PASRPECRPNFGADKTLMGDSN----CVQCGSCIQACPTGAMVDARDRKQGDTDLLKKVD 725

Query: 97  DIDMIKCIYCGL 108
            I    C YCG+
Sbjct: 726 TI----CTYCGV 733


>gi|115525856|ref|YP_782767.1| hydrogenases, Fe-only [Rhodopseudomonas palustris BisA53]
 gi|115519803|gb|ABJ07787.1| hydrogenases, Fe-only [Rhodopseudomonas palustris BisA53]
          Length = 619

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 23/72 (31%), Gaps = 3/72 (4%)

Query: 59  GEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
              RC+ C+ C AIC            G             D     C+ CG C   CP 
Sbjct: 166 DMRRCVRCQRCVAICRYHQKIDALAIEGSGLDRVVALRDAKDYPSSVCVSCGQCVLVCPT 225

Query: 116 DAIVEGPNFEFA 127
            A+ E    + A
Sbjct: 226 GALGERDETDRA 237


>gi|331269709|ref|YP_004396201.1| hydrogenase [Clostridium botulinum BKT015925]
 gi|329126259|gb|AEB76204.1| hydrogenase [Clostridium botulinum BKT015925]
          Length = 582

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 3/65 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIE---SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
              +CI C  C   C ++ +T     +        +      +D   C+ CG C  ACPV
Sbjct: 149 NRHKCIKCGRCVTTCKSKTLTSSILLNHKNNRFILQTQNHKCLDESNCLLCGQCVSACPV 208

Query: 116 DAIVE 120
           DA+ E
Sbjct: 209 DALSE 213


>gi|323698993|ref|ZP_08110905.1| glycyl-radical enzyme activating protein family [Desulfovibrio sp.
           ND132]
 gi|323458925|gb|EGB14790.1| glycyl-radical enzyme activating protein family [Desulfovibrio
           desulfuricans ND132]
          Length = 298

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 21/59 (35%), Gaps = 10/59 (16%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           C  C  CE  CP  A+T            R  ++  D  +C  CG C   CP  A    
Sbjct: 55  CTGCGACETACPNGAVTRL----------RNGKFGRDPEQCTDCGACASVCPSGARDMS 103


>gi|317490286|ref|ZP_07948772.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325833631|ref|ZP_08166080.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1]
 gi|316910576|gb|EFV32199.1| 4Fe-4S binding domain-containing protein [Eggerthella sp.
           1_3_56FAA]
 gi|325485555|gb|EGC88024.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1]
          Length = 260

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 28/95 (29%), Gaps = 12/95 (12%)

Query: 27  FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC 86
             +   T    F  G  +  F             + C AC  C   CP   I +  G   
Sbjct: 153 LPEEPVTAKGRFRSGPENALFYPVLVHDAKFVATDACTACGTCVRRCPLNNIALAGGKPA 212

Query: 87  HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            +G+            C +C  C   CP  AI  G
Sbjct: 213 WNGS------------CTHCMACIAGCPTRAIEYG 235


>gi|270296812|ref|ZP_06203011.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270272799|gb|EFA18662.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 373

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 10/55 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
            E  CI C +C   C   A+ + +  +            ID  KC+ CG C   C
Sbjct: 192 DEASCIGCNICVKHCAHDAVHLNASRKAE----------IDYAKCVGCGQCVALC 236


>gi|251777632|ref|ZP_04820552.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
 gi|243081947|gb|EES47837.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium
           botulinum E1 str. 'BoNT E Beluga']
          Length = 1171

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 32/105 (30%), Gaps = 20/105 (19%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI----------------- 80
           F  G+T+   RG          +++CI C  C  +CP   I                   
Sbjct: 667 FMAGTTAYEKRGIAVNVPEWL-QDKCIQCNQCSYVCPHATIRPFLLNEEEKSKAPSSIKL 725

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD--AIVEGPN 123
                     +      +  + C  CG C E CP    A++  P 
Sbjct: 726 IEPKALKSDEKLYYSIGVTPLDCTGCGNCVEVCPAPGKALIMKPQ 770


>gi|269792086|ref|YP_003316990.1| ferredoxin [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269099721|gb|ACZ18708.1| ferredoxin [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 240

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 18/61 (29%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
            G++ CI C  C   C        S                  + C+ C  C E CP   
Sbjct: 121 EGKDLCIRCGRCVRACATFGARAISFANRGWDREVCTPLKEPTLSCVGCLSCAEVCPTGH 180

Query: 118 I 118
           I
Sbjct: 181 I 181


>gi|225374894|ref|ZP_03752115.1| hypothetical protein ROSEINA2194_00517 [Roseburia inulinivorans DSM
           16841]
 gi|225213277|gb|EEG95631.1| hypothetical protein ROSEINA2194_00517 [Roseburia inulinivorans DSM
           16841]
          Length = 263

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 11/56 (19%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           CIAC LCE  CP+ A+ +                 ID  KC  CGLC E CP   I
Sbjct: 218 CIACHLCEKNCPSDAVHVVDN-----------VAYIDQEKCTKCGLCAEKCPKKII 262



 Score = 34.3 bits (77), Expect = 5.0,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 21/66 (31%), Gaps = 11/66 (16%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            +    C+    C   CP  AI +  G              +D   C  CG C  ACP  
Sbjct: 138 KSCNYGCLGFGNCVKACPFDAIHVVDGVAV-----------VDKDACKACGKCVAACPKH 186

Query: 117 AIVEGP 122
            I   P
Sbjct: 187 LIELLP 192


>gi|161502318|ref|YP_001569430.1| putative polyferredoxin [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160863665|gb|ABX20288.1| hypothetical protein SARI_00350 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 287

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 19/69 (27%), Gaps = 11/69 (15%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C  C  C   CP   I                   I   +C  CG C   CP  A+    
Sbjct: 193 CRMCGACWRSCPENVIQFADD-----------TLTITAARCTGCGGCAAVCPHQALRLRF 241

Query: 123 NFEFATETR 131
           + E A    
Sbjct: 242 DMEPAQTRH 250



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 11/50 (22%)

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  +CPAQA  +  G              IDM +CI CG C   CPVDAI
Sbjct: 29  CADVCPAQAFLLTQGQAS-----------IDMARCIACGDCLFVCPVDAI 67


>gi|187924997|ref|YP_001896639.1| formate dehydrogenase, subunit alpha [Burkholderia phytofirmans
           PsJN]
 gi|187716191|gb|ACD17415.1| formate dehydrogenase, alpha subunit [Burkholderia phytofirmans
           PsJN]
          Length = 982

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     +G         +        +C+ CG C  
Sbjct: 188 YFTYDASKCIVCNRCVRACEETQGTFALTIAGRGFESRVAASENVPFMESECVSCGACVA 247

Query: 112 ACPVDAIVE 120
           ACP   + E
Sbjct: 248 ACPTATLQE 256


>gi|50122691|ref|YP_051858.1| putative pyruvate formate-lyase activating enzyme [Pectobacterium
           atrosepticum SCRI1043]
 gi|49613217|emb|CAG76668.1| putative pyruvate formate-lyase activating enzyme [Pectobacterium
           atrosepticum SCRI1043]
          Length = 316

 Score = 43.5 bits (101), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 10/94 (10%)

Query: 27  FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC 86
            F     I  P+         R  + +   P+   +C+ C  C   CP    T+ +    
Sbjct: 29  IFMKGCNIRCPWCAN--PEGIRRAYQILFSPD---KCLHCGKCAEACPRGIHTLIADEYG 83

Query: 87  HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
                           C  C  C+ ACP +A+  
Sbjct: 84  SRFHHIDRTVQ-----CTGCRKCEAACPSNALDI 112



 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 28/75 (37%), Gaps = 8/75 (10%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           K  T   F  +       +G    I  K C   CP  A          +G RR  +    
Sbjct: 5   KDITGRIFNIQKYSIYDGDGVRTLIFMKGCNIRCPWCAN--------PEGIRRAYQILFS 56

Query: 100 MIKCIYCGLCQEACP 114
             KC++CG C EACP
Sbjct: 57  PDKCLHCGKCAEACP 71


>gi|332298658|ref|YP_004440580.1| FAD dependent oxidoreductase [Treponema brennaborense DSM 12168]
 gi|332181761|gb|AEE17449.1| FAD dependent oxidoreductase [Treponema brennaborense DSM 12168]
          Length = 665

 Score = 43.5 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 2/66 (3%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESG--PRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            + E  C  C  CE +CP  AIT                    ++   C  CG C  ACP
Sbjct: 583 RSNELMCNGCSSCEKVCPYGAITYADKEFKMPDRTVAVRRVAQVNSAVCQGCGACTVACP 642

Query: 115 VDAIVE 120
             A+  
Sbjct: 643 SGAMDL 648



 Score = 35.1 bits (79), Expect = 3.6,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 15/40 (37%), Gaps = 2/40 (5%)

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           +     +D  KC  CG+C E CP   I     F      R
Sbjct: 232 KRKARYVDETKCTGCGICTEKCPQKKIP--NEFNLGMNNR 269


>gi|330507975|ref|YP_004384403.1| metal ABC transporter ATP-binding protein [Methanosaeta concilii
           GP-6]
 gi|328928783|gb|AEB68585.1| metal ABC transporter, ATP-binding protein [Methanosaeta concilii
           GP-6]
          Length = 586

 Score = 43.5 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/78 (21%), Positives = 23/78 (29%), Gaps = 8/78 (10%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
                + R      +C   K CE  CP                 + +   I    C+ CG
Sbjct: 1   MRIAIINRDRCQPRKC--SKECEYFCP---PVRTGDETIVFADGKPL---ITENLCVGCG 52

Query: 108 LCQEACPVDAIVEGPNFE 125
           +C   CP  AI      E
Sbjct: 53  ICVRKCPFGAITITNLPE 70


>gi|325263205|ref|ZP_08129940.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Clostridium sp. D5]
 gi|324031598|gb|EGB92878.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Clostridium sp. D5]
          Length = 258

 Score = 43.5 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 12/73 (16%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
             ++    +  +P  +E C  C  C ++CP +AI  E+  +                KCI
Sbjct: 168 HPYKETKVMPFHPIADESCTGCGTCVSVCPTEAIDRENPRQTD------------ETKCI 215

Query: 105 YCGLCQEACPVDA 117
            C  C + CP  A
Sbjct: 216 DCFACVKNCPAHA 228



 Score = 39.3 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 11/37 (29%), Positives = 16/37 (43%)

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           +G   +  T+    + I    C  CG C   CP +AI
Sbjct: 165 NGNHPYKETKVMPFHPIADESCTGCGTCVSVCPTEAI 201


>gi|313672554|ref|YP_004050665.1| electron transport complex, rnfabcdge type, c subunit
           [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939310|gb|ADR18502.1| electron transport complex, RnfABCDGE type, C subunit
           [Calditerrivibrio nitroreducens DSM 19672]
          Length = 433

 Score = 43.5 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/77 (23%), Positives = 24/77 (31%), Gaps = 4/77 (5%)

Query: 41  GSTSPRFRGEHALRRYPNGE---ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
             T+    G   LR     +     CI C  C   CP   +      +           D
Sbjct: 332 TPTTKGTSGVIVLREDDMPDMKKSNCIRCGRCVEACPMG-LVPAIMEQFSLNEMYEKLID 390

Query: 98  IDMIKCIYCGLCQEACP 114
             ++ CI CG C   CP
Sbjct: 391 WHVVNCIECGCCSYVCP 407



 Score = 38.9 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 3/34 (8%)

Query: 91  RRTVRYDIDMIKCIYCGLCQEACP---VDAIVEG 121
           R     D+    CI CG C EACP   V AI+E 
Sbjct: 345 REDDMPDMKKSNCIRCGRCVEACPMGLVPAIMEQ 378


>gi|309388392|gb|ADO76272.1| Electron transfer flavoprotein alpha subunit [Halanaerobium
           praevalens DSM 2228]
 gi|309389792|gb|ADO77672.1| Electron transfer flavoprotein alpha subunit [Halanaerobium
           praevalens DSM 2228]
          Length = 418

 Score = 43.5 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 11/69 (15%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                E++C+ C +C   CP  A+ +E+               +D  KC  CG+C + C 
Sbjct: 1   MLNIFEDKCVGCGVCVTSCPFDALKMENDIAV-----------VDTEKCTMCGICVKKCN 49

Query: 115 VDAIVEGPN 123
            DA+     
Sbjct: 50  FDAMEIDKE 58



 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 17/35 (48%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           +I   KC+ CG+C  +CP DA+    +       +
Sbjct: 3   NIFEDKCVGCGVCVTSCPFDALKMENDIAVVDTEK 37


>gi|295109922|emb|CBL23875.1| electron transport complex, RnfABCDGE type, B subunit [Ruminococcus
           obeum A2-162]
          Length = 263

 Score = 43.5 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 26/82 (31%), Positives = 31/82 (37%), Gaps = 11/82 (13%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P+E+ +                 E  CI CK CE  CP  AIT+                
Sbjct: 192 PYEQQTFVGCSSTAKGKAVTTACEIGCIGCKKCEKTCPNGAITVTD-----------FCA 240

Query: 97  DIDMIKCIYCGLCQEACPVDAI 118
            ID  KC  CG C+EACP   I
Sbjct: 241 HIDYDKCTNCGACKEACPRHVI 262



 Score = 34.3 bits (77), Expect = 6.1,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 23/69 (33%), Gaps = 5/69 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGT-----RRTVRYDIDMIKCIYCGLCQEAC 113
             E C AC  C A CP   I +    +          +         I CI C  C++ C
Sbjct: 169 NREACKACGKCIAKCPHHLIELAPYEQQTFVGCSSTAKGKAVTTACEIGCIGCKKCEKTC 228

Query: 114 PVDAIVEGP 122
           P  AI    
Sbjct: 229 PNGAITVTD 237


>gi|300087732|ref|YP_003758254.1| NADH dehydrogenase [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527465|gb|ADJ25933.1| NADH dehydrogenase (quinone) [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 624

 Score = 43.5 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/91 (25%), Positives = 34/91 (37%), Gaps = 14/91 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            +R+ FK +   +   ++            L RY   E  C  C LC   CPA AI+ + 
Sbjct: 540 TIRH-FKDEYVAHIQEKRCPAGVCKP----LIRYYIVEANCNGCSLCIKECPADAISFQG 594

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
             +            +D  KC  CG C + C
Sbjct: 595 KKQPV---------KLDQDKCTKCGACYDIC 616



 Score = 37.8 bits (86), Expect = 0.56,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 17/51 (33%)

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
                    I+         +  +RY I    C  C LC + CP DAI   
Sbjct: 543 HFKDEYVAHIQEKRCPAGVCKPLIRYYIVEANCNGCSLCIKECPADAISFQ 593


>gi|300087731|ref|YP_003758253.1| ferredoxin [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299527464|gb|ADJ25932.1| ferredoxin [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 243

 Score = 43.5 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 3/69 (4%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTV--RYDIDMIKCIYCGLCQEACPVDA 117
            + CI C LC  +C A+ + +++    + GTRR V   +  +   CI CG C   CP  A
Sbjct: 124 NDNCILCGLCNRVC-AEVVGVDAISLVNRGTRREVALPFYDETNDCIACGACSYICPTKA 182

Query: 118 IVEGPNFEF 126
           I      E 
Sbjct: 183 IQMKDTKEI 191



 Score = 35.5 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 1/61 (1%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R E AL  Y +    CIAC  C  ICP +AI ++             + D  M +C  CG
Sbjct: 154 RREVALPFY-DETNDCIACGACSYICPTKAIQMKDTKEIRTMIWPNSKADFKMQQCESCG 212

Query: 108 L 108
           +
Sbjct: 213 V 213


>gi|257469320|ref|ZP_05633414.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium ulcerans ATCC
           49185]
 gi|317063567|ref|ZP_07928052.1| pyruvate synthase [Fusobacterium ulcerans ATCC 49185]
 gi|313689243|gb|EFS26078.1| pyruvate synthase [Fusobacterium ulcerans ATCC 49185]
          Length = 1194

 Score = 43.5 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 38/115 (33%), Gaps = 21/115 (18%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA------------QAITIESGPR 85
           FE G+++   RG           E CI C  C  +CP             +A +      
Sbjct: 681 FENGTSAFEKRGIAVHVPVWI-AENCIQCNQCSYVCPHAVLRPFLMTAEEKAASPVELKT 739

Query: 86  CHDGTRRTVRYDIDMI----KCIYCGLCQEACP--VDAIVEGPNFE--FATETRQ 132
                +    ++  M      C  CG C   CP    A+V  P  +   A E R+
Sbjct: 740 IKPIGKGLEGFEYRMQVSALDCTGCGSCANTCPAKEKALVMKPIADSLEAGEDRK 794


>gi|257064392|ref|YP_003144064.1| 4Fe-4S protein [Slackia heliotrinireducens DSM 20476]
 gi|256792045|gb|ACV22715.1| 4Fe-4S protein [Slackia heliotrinireducens DSM 20476]
          Length = 398

 Score = 43.5 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 18/54 (33%), Gaps = 11/54 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           C  C   C    I  E                +D  KCI CG C   CP DAI 
Sbjct: 33  CMRCLESCAGGCIGYEDNE-----------ITVDPTKCIGCGTCATVCPTDAIH 75



 Score = 42.0 bits (97), Expect = 0.025,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 6/65 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + C  C++C   CP  A           G +  V      ++C  C LC + CP  A+
Sbjct: 291 NTDECRGCRMCATFCPTGANFKFQTKSGSVGVKHRV------LQCANCRLCLDICPDKAL 344

Query: 119 VEGPN 123
                
Sbjct: 345 QLSEE 349


>gi|256619351|ref|ZP_05476197.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Enterococcus
           faecalis ATCC 4200]
 gi|256598878|gb|EEU18054.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Enterococcus
           faecalis ATCC 4200]
          Length = 151

 Score = 43.5 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 15/69 (21%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           + RY   +++CI C  C+ +C                  +    + + ++CI CG C+ A
Sbjct: 95  IFRYRLDKDKCINCGKCKKVCQMN---------------KDSVENCNHLECIRCGRCKNA 139

Query: 113 CPVDAIVEG 121
           CPVDAI  G
Sbjct: 140 CPVDAISYG 148


>gi|255015364|ref|ZP_05287490.1| related to F420H2-dehydrogenase, beta subunit [Bacteroides sp.
           2_1_7]
          Length = 393

 Score = 43.5 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 6/58 (10%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
             ++ C  C  C  +C  QA++++            +   ID+ KC  C LC++ACPV
Sbjct: 5   CDKKDCTGCSSCYNVCVHQALSMQPDKEG------FLYPVIDVDKCKECSLCEKACPV 56


>gi|302873024|ref|YP_003841657.1| hypothetical protein Clocel_0104 [Clostridium cellulovorans 743B]
 gi|307688817|ref|ZP_07631263.1| ferredoxin, 4Fe-4S [Clostridium cellulovorans 743B]
 gi|302575881|gb|ADL49893.1| hypothetical protein Clocel_0104 [Clostridium cellulovorans 743B]
          Length = 56

 Score = 43.5 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 11/58 (18%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
            + CI+C  C + CP  AI                 Y+I+   CI CG C   CPV A
Sbjct: 6   NDSCISCGACASECPVSAINQGDAQ-----------YEINDSSCIDCGNCANVCPVGA 52


>gi|168702048|ref|ZP_02734325.1| cyclic nucleotide-binding domain (cNMP-BD) protein [Gemmata
           obscuriglobus UQM 2246]
          Length = 917

 Score = 43.5 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 12/63 (19%)

Query: 61  ERCIACK--LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             C +C+   C   CP  AI            R      +    CI CGLC+  CP  AI
Sbjct: 800 TSCRSCQKPYCMEGCPVDAIHR----------RGAHLEVVIENHCIGCGLCERNCPYGAI 849

Query: 119 VEG 121
              
Sbjct: 850 HMT 852



 Score = 41.2 bits (95), Expect = 0.043,   Method: Composition-based stats.
 Identities = 23/92 (25%), Positives = 30/92 (32%), Gaps = 12/92 (13%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
           Y  E        R    L         CI C LCE  CP  AI + +    +    +   
Sbjct: 809 YCMEGCPVDAIHRRGAHLEVVIENH--CIGCGLCERNCPYGAIHMTARGTPNPAATQHPS 866

Query: 96  YD------IDMIKCIYCG----LCQEACPVDA 117
            D         + C  CG     C +ACP +A
Sbjct: 867 GDPLKIAARRAVNCDLCGGNEPFCVQACPHEA 898



 Score = 40.9 bits (94), Expect = 0.068,   Method: Composition-based stats.
 Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114
             +RCI C  C   C ++    +       G    + +D    +    C+ CG C  +CP
Sbjct: 300 DHDRCIVCDRCVRAC-SEVKPFKVIGHTGKGYGTRISFDLDSVMRDSTCVQCGECMNSCP 358

Query: 115 VDAIVE 120
             A+  
Sbjct: 359 TGALSL 364


>gi|297619109|ref|YP_003707214.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus voltae A3]
 gi|297378086|gb|ADI36241.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           voltae A3]
          Length = 654

 Score = 43.5 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 23/65 (35%), Gaps = 7/65 (10%)

Query: 61  ERCIACKLCEAICPAQAIT-------IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           E+C  C  C  +CP            +              +Y IDM  CI CGLC   C
Sbjct: 244 EKCTGCGSCAEVCPISVPNEFDMGLGMRKAIYKPFPQAVPAKYTIDMEHCIDCGLCSRVC 303

Query: 114 PVDAI 118
              AI
Sbjct: 304 GPQAI 308



 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 21/66 (31%), Gaps = 7/66 (10%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               + C AC +C   CP  A                +  ++    C  CG C   CP  
Sbjct: 578 NIDSDICGACGICVQQCPYGAPRFVEKD-------GKLSVEVISALCKGCGTCAAGCPSG 630

Query: 117 AIVEGP 122
           A+ +  
Sbjct: 631 ALEQSH 636



 Score = 35.5 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 10/27 (37%), Positives = 11/27 (40%), Gaps = 3/27 (11%)

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEF 126
             KC  CG C E CP   I     F+ 
Sbjct: 243 EEKCTGCGSCAEVCP---ISVPNEFDM 266


>gi|229581344|ref|YP_002839743.1| hypothetical protein YN1551_0692 [Sulfolobus islandicus Y.N.15.51]
 gi|228012060|gb|ACP47821.1| conserved hypothetical protein [Sulfolobus islandicus Y.N.15.51]
          Length = 619

 Score = 43.5 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRC-HDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              CI C  C ++CP    T +         +      + D+  C  CGLC++ CPV 
Sbjct: 284 FNGCILCGKCVSVCPYGEQTNDVFHTPLGFYSISYFEKENDLANCHMCGLCEQVCPVR 341


>gi|154151379|ref|YP_001404997.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Candidatus Methanoregula boonei 6A8]
 gi|153999931|gb|ABS56354.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Methanoregula boonei 6A8]
          Length = 428

 Score = 43.5 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/80 (18%), Positives = 22/80 (27%), Gaps = 7/80 (8%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK--- 102
            F+              C  C  C  +CP +                     +   +   
Sbjct: 82  DFKVTVREHPRYIDMVACTGCGDCIEVCPVEVYNRFDAGVGVRKAIYKPHPQVVPDRVVK 141

Query: 103 ----CIYCGLCQEACPVDAI 118
               CI CGLC ++C   AI
Sbjct: 142 DNEHCIECGLCYDSCGPQAI 161


>gi|34540362|ref|NP_904841.1| pyruvate ferredoxin/flavodoxin oxidoreductase family protein
           [Porphyromonas gingivalis W83]
 gi|188995282|ref|YP_001929534.1| pyruvate-flavodoxin oxidoreductase [Porphyromonas gingivalis ATCC
           33277]
 gi|34396674|gb|AAQ65740.1| pyruvate ferredoxin/flavodoxin oxidoreductase family protein
           [Porphyromonas gingivalis W83]
 gi|188594962|dbj|BAG33937.1| pyruvate-flavodoxin oxidoreductase [Porphyromonas gingivalis ATCC
           33277]
          Length = 1193

 Score = 43.5 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 19/102 (18%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV---------- 94
           RG  A        + C+ C  C  +CP   I             G +             
Sbjct: 677 RGVAAFVPVWE-ADNCVQCNQCAYVCPHATIRPFVLTKEEEEKTGVKVLKAVGKQFPDMG 735

Query: 95  -RYDIDMIKCIYCGLCQEACPVD----AIVEGPNFEFATETR 131
            R  ++++ C+ C  C + CP +    A+   P  E   E +
Sbjct: 736 FRIQVNVMDCLGCSNCVDVCPGNKNGKALTMQPIEEQYEEQK 777


>gi|257456864|ref|ZP_05622045.1| nitrogen fixation protein [Treponema vincentii ATCC 35580]
 gi|257445573|gb|EEV20635.1| nitrogen fixation protein [Treponema vincentii ATCC 35580]
          Length = 425

 Score = 43.5 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/113 (21%), Positives = 36/113 (31%), Gaps = 12/113 (10%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63
           F+   + + L   +    +          +++ P  KG  S    G+          E C
Sbjct: 306 FKSKNTHIILNGLLRGTLV---------DSLDLPAGKGIKSIHAVGKD--IDIQQQLEEC 354

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
             C  C   CPA    I++  R     R        +  C  CG C   CPV 
Sbjct: 355 GHCGQCLRSCPAYIDPIDTVRRI-QKKRYDAETMRSIALCSGCGCCSAVCPVR 406


>gi|226940366|ref|YP_002795440.1| Electron transport complex protein rnfC [Laribacter hongkongensis
           HLHK9]
 gi|226715293|gb|ACO74431.1| Electron transport complex protein rnfC [Laribacter hongkongensis
           HLHK9]
          Length = 440

 Score = 43.5 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 22/70 (31%), Gaps = 2/70 (2%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + CI C  C   CP        G R        +     ++ CI CG C  +CP   I
Sbjct: 364 HRQPCIRCGQCIDACPMGLNPSLLG-RLAGKQEYYLTARHGVLDCIECGACTLSCP-SGI 421

Query: 119 VEGPNFEFAT 128
                   + 
Sbjct: 422 PLVQYHRMSK 431


>gi|160934887|ref|ZP_02082273.1| hypothetical protein CLOLEP_03762 [Clostridium leptum DSM 753]
 gi|156866340|gb|EDO59712.1| hypothetical protein CLOLEP_03762 [Clostridium leptum DSM 753]
          Length = 56

 Score = 43.5 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 28/57 (49%), Gaps = 11/57 (19%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           + CI+C  CEA CP  AI+   G            Y ID   CI CG C +ACPV A
Sbjct: 7   DECISCGACEAGCPVNAISEGDGK-----------YVIDADTCIDCGACADACPVGA 52


>gi|148977610|ref|ZP_01814186.1| electron transport complex protein RnfC [Vibrionales bacterium
           SWAT-3]
 gi|145963125|gb|EDK28393.1| electron transport complex protein RnfC [Vibrionales bacterium
           SWAT-3]
          Length = 964

 Score = 43.5 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 38/105 (36%), Gaps = 9/105 (8%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            CI C  C   CPA  +  +               ++++  CI CG C   CP   I   
Sbjct: 377 ECIRCSACAEACPAS-LLPQQLQWHAKANELDKCEELNIKDCIECGACAFVCP-SEIPLV 434

Query: 122 PNFEFAT---ETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
             +  A    +TR++     ER      R+E +  R +  D   R
Sbjct: 435 QYYRQAKAEIKTRKDEAAAAER---AKIRFEEKSAR-MERDKAER 475


>gi|167039314|ref|YP_001662299.1| putative PAS/PAC sensor protein [Thermoanaerobacter sp. X514]
 gi|166853554|gb|ABY91963.1| putative PAS/PAC sensor protein [Thermoanaerobacter sp. X514]
          Length = 580

 Score = 43.5 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 25/73 (34%), Gaps = 11/73 (15%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             L      +  C  C  C   CP +AI +  G             ++    CIYCG C 
Sbjct: 1   MILDVISVSKANCKNCYRCVRHCPVKAIKVVGGQA-----------EVVDSLCIYCGRCV 49

Query: 111 EACPVDAIVEGPN 123
             CP +A     +
Sbjct: 50  IECPQNAKKIRND 62


>gi|332671079|ref|YP_004454087.1| hydrogenase, Fe-only [Cellulomonas fimi ATCC 484]
 gi|332340117|gb|AEE46700.1| hydrogenase, Fe-only [Cellulomonas fimi ATCC 484]
          Length = 1088

 Score = 43.5 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 23/87 (26%), Gaps = 3/87 (3%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
                P                +CI+C LC A C           +   G       D  
Sbjct: 608 PLHVRPWTPVAQDHPFIVRDHNKCISCGLCVAACAQVEGVDVLAFQFDGGRLTVGTRDDQ 667

Query: 100 M---IKCIYCGLCQEACPVDAIVEGPN 123
                 C+ CG C  ACP  A+     
Sbjct: 668 PLGLTDCVSCGQCVRACPCGALDYVRE 694


>gi|303247145|ref|ZP_07333420.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Desulfovibrio fructosovorans JJ]
 gi|302491571|gb|EFL51456.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Desulfovibrio fructosovorans JJ]
          Length = 651

 Score = 43.5 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 21/63 (33%), Gaps = 4/63 (6%)

Query: 59  GEERCIACKLCEAIC-PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
              RC     C + C    A+ +        G     R  +    C+ CG C   CP +A
Sbjct: 553 DLARCKGTGACVSACLNEGALRLVP---MDVGGETVNRAQVTPALCLGCGACVAVCPENA 609

Query: 118 IVE 120
           I  
Sbjct: 610 INI 612


>gi|298376335|ref|ZP_06986291.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 3_1_19]
 gi|298267372|gb|EFI09029.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 3_1_19]
          Length = 262

 Score = 43.5 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 11/87 (12%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
             KG+   R +G    +      + C  C+ C  +CP  AI++       D         
Sbjct: 169 EVKGNFPYRVKGPSTPQAPVTDNDLCTQCEYCVDVCPTHAISLADEGMYSD--------- 219

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNF 124
               +CI C  C + CP  A      +
Sbjct: 220 --PNQCIKCCACVKECPEGARTFDTPY 244



 Score = 35.5 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 7/30 (23%), Positives = 10/30 (33%)

Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATET 130
             C  C  C + CP  AI       ++   
Sbjct: 192 DLCTQCEYCVDVCPTHAISLADEGMYSDPN 221


>gi|260437057|ref|ZP_05790873.1| RnfB/polyferredoxin [Butyrivibrio crossotus DSM 2876]
 gi|292810366|gb|EFF69571.1| RnfB/polyferredoxin [Butyrivibrio crossotus DSM 2876]
          Length = 263

 Score = 43.5 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 23/62 (37%), Gaps = 11/62 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +  CI C LC   C   AI +++               ID  KC  CG C E CP   I
Sbjct: 212 CKSGCIGCTLCVKQCEYGAIVMDNN-----------IPVIDYEKCTGCGKCAEKCPKKII 260

Query: 119 VE 120
             
Sbjct: 261 HL 262



 Score = 38.9 bits (89), Expect = 0.21,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 5/70 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQEAC 113
            ++ C +C  C   CP   I +               +     D     CI C LC + C
Sbjct: 167 DKKLCTSCGKCVKACPKNLIELRPEKDIATVYCSSHEKGKAVMDACKSGCIGCTLCVKQC 226

Query: 114 PVDAIVEGPN 123
              AIV   N
Sbjct: 227 EYGAIVMDNN 236



 Score = 37.0 bits (84), Expect = 0.91,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 11/72 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            +    C+    C  +C   AI+I +G    D              C  CG C +ACP +
Sbjct: 136 KSCNYGCLGFGSCVKVCSNNAISIVNGVAVVDKK-----------LCTSCGKCVKACPKN 184

Query: 117 AIVEGPNFEFAT 128
            I   P  + AT
Sbjct: 185 LIELRPEKDIAT 196


>gi|237665790|ref|ZP_04525778.1| dihydroorotate dehydrogenase family protein [Clostridium butyricum
           E4 str. BoNT E BL5262]
 gi|237658737|gb|EEP56289.1| dihydroorotate dehydrogenase family protein [Clostridium butyricum
           E4 str. BoNT E BL5262]
          Length = 362

 Score = 43.5 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 11/61 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +++C  C+LCE  CP  AIT                  ID   C  CGLC+  CP  AI
Sbjct: 310 NKDKCTNCRLCEKACPYFAITSIDNQ-----------IKIDTKNCFGCGLCESRCPSKAI 358

Query: 119 V 119
            
Sbjct: 359 Y 359



 Score = 35.5 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPN 123
           I+  KC  C LC++ACP  AI    N
Sbjct: 309 INKDKCTNCRLCEKACPYFAITSIDN 334


>gi|168184134|ref|ZP_02618798.1| iron-sulfur cluster-binding protein [Clostridium botulinum Bf]
 gi|237794698|ref|YP_002862250.1| iron-sulfur cluster-binding protein [Clostridium botulinum Ba4 str.
           657]
 gi|182672734|gb|EDT84695.1| iron-sulfur cluster-binding protein [Clostridium botulinum Bf]
 gi|229261438|gb|ACQ52471.1| iron-sulfur cluster-binding protein [Clostridium botulinum Ba4 str.
           657]
          Length = 425

 Score = 43.5 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 3/67 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++RC+ C  C  +CP +A               +   ++    C+ CG+C + C  +AI
Sbjct: 290 NKDRCVGCGKCTKVCPMEA---IKLKETSLENHNSKIAELSEDLCLGCGVCVKNCKTNAI 346

Query: 119 VEGPNFE 125
                 E
Sbjct: 347 KLVRRKE 353



 Score = 41.6 bits (96), Expect = 0.035,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 6/64 (9%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           PN    C  C  CEA   A+                +   DI+  +C+ CG C + CP++
Sbjct: 254 PNFICNCCKC-HCEAFVSAK-----KFGFLVPVNTTSYLPDINKDRCVGCGKCTKVCPME 307

Query: 117 AIVE 120
           AI  
Sbjct: 308 AIKL 311


>gi|153815520|ref|ZP_01968188.1| hypothetical protein RUMTOR_01755 [Ruminococcus torques ATCC 27756]
 gi|317502217|ref|ZP_07960391.1| nitrite and sulphite reductase 4Fe-4S region [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|331088784|ref|ZP_08337694.1| hypothetical protein HMPREF1025_01277 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145847162|gb|EDK24080.1| hypothetical protein RUMTOR_01755 [Ruminococcus torques ATCC 27756]
 gi|316896426|gb|EFV18523.1| nitrite and sulphite reductase 4Fe-4S region [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|330407307|gb|EGG86810.1| hypothetical protein HMPREF1025_01277 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 864

 Score = 43.5 bits (101), Expect = 0.011,   Method: Composition-based stats.
 Identities = 25/129 (19%), Positives = 36/129 (27%), Gaps = 28/129 (21%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC--EAICPAQAITIESGPRCHDGTRRT 93
            P           G    +      E+C  C++C  E  CP  A  +  G          
Sbjct: 694 CPNNCVKPDLNDLGIIGQKVPWVDLEKCRGCRICQVEKNCPIHAAKMVDGKIV------- 746

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIV 153
               ID   C +CG C   CP         F  +        Y        G RW  ++ 
Sbjct: 747 ----IDENVCNHCGRCISKCPFGV---TEEF-VSGYR----VY-------IGGRWGKKVA 787

Query: 154 RNIVTDSPY 162
           R    +  +
Sbjct: 788 RGRYLEKVF 796


>gi|317490285|ref|ZP_07948771.1| nitroreductase [Eggerthella sp. 1_3_56FAA]
 gi|325833585|ref|ZP_08166034.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1]
 gi|316910575|gb|EFV32198.1| nitroreductase [Eggerthella sp. 1_3_56FAA]
 gi|325485509|gb|EGC87978.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1]
          Length = 260

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 11/63 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E RCI C LC   CPA  I +E G              +    C+ CG C   CP  A+
Sbjct: 10  DEARCIGCGLCREDCPAANIVVEQGKAA-----------VISQDCLMCGHCVAICPQAAV 58

Query: 119 VEG 121
              
Sbjct: 59  TMT 61



 Score = 35.5 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 12/21 (57%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID  +CI CGLC+E CP   I
Sbjct: 9   IDEARCIGCGLCREDCPAANI 29


>gi|290968031|ref|ZP_06559580.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Megasphaera genomosp. type_1 str. 28L]
 gi|290781937|gb|EFD94516.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Megasphaera genomosp. type_1 str. 28L]
          Length = 593

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 27/80 (33%), Gaps = 11/80 (13%)

Query: 40  KGSTSPRFRGEHALRRYPN-GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           K  T    R     R       + CI CK C       A+  E+  R            I
Sbjct: 518 KKFTPEETRQYKVRRVPCRVDRDTCIGCKTCLR-TGCPALRYETDSRKAH---------I 567

Query: 99  DMIKCIYCGLCQEACPVDAI 118
               C+ C +C + CPV AI
Sbjct: 568 SQADCVGCTVCLQVCPVQAI 587


>gi|317152072|ref|YP_004120120.1| nitroreductase [Desulfovibrio aespoeensis Aspo-2]
 gi|316942323|gb|ADU61374.1| nitroreductase [Desulfovibrio aespoeensis Aspo-2]
          Length = 267

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 18/67 (26%), Gaps = 7/67 (10%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
                  C  C  C A CP   I  +                     CI CG C   CPV
Sbjct: 1   MFCDTGICKRCGACAAECPYSLIVEDGEGFPWLRPAARKT-------CIGCGHCVAVCPV 53

Query: 116 DAIVEGP 122
            A+    
Sbjct: 54  GALTLPD 60


>gi|326201392|ref|ZP_08191264.1| hydrogenase, Fe-only [Clostridium papyrosolvens DSM 2782]
 gi|325988960|gb|EGD49784.1| hydrogenase, Fe-only [Clostridium papyrosolvens DSM 2782]
          Length = 583

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 3/70 (4%)

Query: 59  GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115
              +C+ C+ C ++C   Q +++ S       +  +  +D  + +  C  CG C   CPV
Sbjct: 144 DPNKCVLCRRCVSMCKNIQTVSVISATERGFKSAISCAFDRSLEEVPCTMCGQCISVCPV 203

Query: 116 DAIVEGPNFE 125
            A+ E  + E
Sbjct: 204 GALREKDDTE 213


>gi|253997398|ref|YP_003049462.1| formate dehydrogenase subunit alpha [Methylotenera mobilis JLW8]
 gi|253984077|gb|ACT48935.1| formate dehydrogenase, alpha subunit [Methylotenera mobilis JLW8]
          Length = 954

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 2/73 (2%)

Query: 55  RYPNGEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
            +     +CI C  C   C        +    R  +        D    +C+ CG C +A
Sbjct: 162 YFTFDPSKCIVCSRCVRACEETQGTFALTISGRGFESKVSAGNKDFLDSECVSCGACVQA 221

Query: 113 CPVDAIVEGPNFE 125
           CP   ++E    E
Sbjct: 222 CPTATLIEKTVIE 234


>gi|224367282|ref|YP_002601445.1| HydA1 [Desulfobacterium autotrophicum HRM2]
 gi|223689998|gb|ACN13281.1| HydA1 [Desulfobacterium autotrophicum HRM2]
          Length = 464

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 10/55 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
            E  C  C  C+ ICP  A++   G              ID  KCI CG C + C
Sbjct: 9   DEALCTGCGRCKEICPVGAVSGTPGQPHK----------IDQKKCIICGQCVQIC 53



 Score = 38.5 bits (88), Expect = 0.28,   Method: Composition-based stats.
 Identities = 12/32 (37%), Positives = 15/32 (46%)

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            +     ID   C  CG C+E CPV A+   P
Sbjct: 1   MKDAIVAIDEALCTGCGRCKEICPVGAVSGTP 32


>gi|254167532|ref|ZP_04874384.1| 4Fe-4S binding domain protein [Aciduliprofundum boonei T469]
 gi|197623795|gb|EDY36358.1| 4Fe-4S binding domain protein [Aciduliprofundum boonei T469]
          Length = 62

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 23/66 (34%), Gaps = 11/66 (16%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +         C  C  C   CP   + ++                ID  KCI CG C  A
Sbjct: 1   MNMMNVDPAVCNYCGACVGSCPVNCMFLDE-----------TIVRIDEDKCIKCGFCIRA 49

Query: 113 CPVDAI 118
           CPV AI
Sbjct: 50  CPVGAI 55


>gi|167586514|ref|ZP_02378902.1| formate dehydrogenase, alpha subunit [Burkholderia ubonensis Bu]
          Length = 983

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 23/76 (30%), Gaps = 3/76 (3%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCI 104
           R + +   +     +CI C  C   C     T     +                   +C+
Sbjct: 180 RKDESNPYFTYDPSKCIVCNRCVRACEETQGTFALTIAARGFESRVAAGESEAFMDSECV 239

Query: 105 YCGLCQEACPVDAIVE 120
            CG C  ACP   + E
Sbjct: 240 SCGACVAACPTATLQE 255


>gi|281358699|ref|ZP_06245176.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548]
 gi|281314825|gb|EFA98861.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548]
          Length = 634

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 10/68 (14%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            AL R      +C  C  C   CP  AIT           +    + ID  KCI CG C+
Sbjct: 574 KALARPEILASKCKGCTACARKCPVGAITG----------KVKEVHVIDADKCIKCGACK 623

Query: 111 EACPVDAI 118
            AC   A+
Sbjct: 624 AACKFGAV 631



 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 14/40 (35%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +          +   R +I   KC  C  C   CPV AI
Sbjct: 562 HVFKKICPVGECKALARPEILASKCKGCTACARKCPVGAI 601


>gi|329897534|ref|ZP_08272141.1| Thioredoxin reductase [gamma proteobacterium IMCC3088]
 gi|328921129|gb|EGG28534.1| Thioredoxin reductase [gamma proteobacterium IMCC3088]
          Length = 438

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 21/66 (31%), Gaps = 9/66 (13%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                  +C+ C  C   CP              G        I+   CI  G C+ ACP
Sbjct: 52  HPIIDPSKCLGCGACVNACPEG---------DVLGLIGGKSVLINGANCIGHGACKAACP 102

Query: 115 VDAIVE 120
            DAI  
Sbjct: 103 FDAIDL 108



 Score = 38.9 bits (89), Expect = 0.25,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 16/34 (47%)

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           +   + H     T+   ID  KC+ CG C  ACP
Sbjct: 38  DDAVQSHMTEPPTLHPIIDPSKCLGCGACVNACP 71


>gi|322791201|gb|EFZ15738.1| hypothetical protein SINV_11846 [Solenopsis invicta]
          Length = 608

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 22/56 (39%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           K C   C      +  G  C + T  +    I    CI CG+C + CP +AI    
Sbjct: 27  KRCRQECKRSCPVVRMGKLCIEVTPNSKIAAISEELCIGCGICVKKCPFEAISIIN 82


>gi|302669638|ref|YP_003829598.1| ferredoxin [Butyrivibrio proteoclasticus B316]
 gi|302394111|gb|ADL33016.1| ferredoxin [Butyrivibrio proteoclasticus B316]
          Length = 56

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 11/59 (18%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           CI+C  C A CP  AI+               +Y ID   CI CG C   CPV AI +G
Sbjct: 9   CISCGSCAAQCPVSAISQGD-----------TQYVIDANTCIDCGSCAAQCPVSAISQG 56


>gi|269139126|ref|YP_003295827.1| putative oxidoreductase Fe-S binding subunit [Edwardsiella tarda
           EIB202]
 gi|267984787|gb|ACY84616.1| putative oxidoreductase Fe-S binding subunit [Edwardsiella tarda
           EIB202]
          Length = 678

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 23/73 (31%), Gaps = 13/73 (17%)

Query: 48  RGEHALRRYPNGEERCIACK--LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
           R     R        C  C+   C  +CP  AI            +      +   KCI 
Sbjct: 41  RIHVIRRGDRRTALLCRHCEDAPCANVCPNGAIE-----------KYNDSIQVRQEKCIG 89

Query: 106 CGLCQEACPVDAI 118
           C  C  ACP  AI
Sbjct: 90  CKTCVVACPFGAI 102



 Score = 37.0 bits (84), Expect = 0.86,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 8/70 (11%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL------CQEAC 113
           +E+CI CK C   CP  AI + +          +VR +    KC  C        C  AC
Sbjct: 84  QEKCIGCKTCVVACPFGAIEVITQSDPRSNHPDSVRANAH--KCDLCDEVADGPSCVAAC 141

Query: 114 PVDAIVEGPN 123
           P +A+     
Sbjct: 142 PSNALQLISE 151


>gi|257085350|ref|ZP_05579711.1| formate dehydrogenase [Enterococcus faecalis Fly1]
 gi|256993380|gb|EEU80682.1| formate dehydrogenase [Enterococcus faecalis Fly1]
          Length = 906

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 3/92 (3%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV 94
           F +G   P  + + +   +    E+CI C+ C  +C  +        +          + 
Sbjct: 133 FTEGKRMPCHQEDTSNPFFSYDPEKCIMCRRCARVCQLRQGRDVLSIANRGFETKMMPSY 192

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
               D   C  CG C  +CP  A+      E+
Sbjct: 193 GQAFDQSICESCGNCVSSCPTGALTAKDTKEY 224


>gi|225075334|ref|ZP_03718533.1| hypothetical protein NEIFLAOT_00337 [Neisseria flavescens
           NRL30031/H210]
 gi|224953509|gb|EEG34718.1| hypothetical protein NEIFLAOT_00337 [Neisseria flavescens
           NRL30031/H210]
          Length = 483

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 18/65 (27%), Gaps = 10/65 (15%)

Query: 62  RCIACKLCEAICPA-----QAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQE 111
           +CI C  C   CP       A    + P                       C  CG C E
Sbjct: 317 QCIRCGACMNHCPVYTRIGGAAYGTTYPGPIGEIISPHLLGLDATRDLPTACTMCGACVE 376

Query: 112 ACPVD 116
            CPV 
Sbjct: 377 VCPVR 381


>gi|120603486|ref|YP_967886.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio vulgaris DP4]
 gi|120563715|gb|ABM29459.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Desulfovibrio vulgaris DP4]
          Length = 452

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/124 (18%), Positives = 36/124 (29%), Gaps = 37/124 (29%)

Query: 58  NGEERCIACKLCEAICPAQA-----------------------ITIESGPRCHDGTRRTV 94
              + C  C LC   CP  A                          E         +   
Sbjct: 289 CDADACTGCGLCVRACPVDALRIVREDGQRTQAGEAVDAGGDVPDDEVAASTARRGKARR 348

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVR 154
           R ++D   C+ CG+C   CP  A+          E R    +  E      D +E  I++
Sbjct: 349 RLEVDTSVCLGCGVCALRCPTGALRL--------EERPARVFHPE------DSFERVILQ 394

Query: 155 NIVT 158
           ++  
Sbjct: 395 SLER 398


>gi|194335216|ref|YP_002017010.1| methyl-viologen-reducing hydrogenase delta subunit [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194307693|gb|ACF42393.1| methyl-viologen-reducing hydrogenase delta subunit [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 750

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 20/62 (32%), Gaps = 10/62 (16%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E C  C+ C   CP  A   E                +   +C  CG+C  ACP   I  
Sbjct: 545 ESCTQCRRCTVECPFGAYDEEKDGTPL----------LYPSRCRRCGVCMGACPQRVISF 594

Query: 121 GP 122
             
Sbjct: 595 KD 596


>gi|325273455|ref|ZP_08139703.1| dihydropyrimidine dehydrogenase subunit B [Pseudomonas sp. TJI-51]
 gi|324101411|gb|EGB99009.1| dihydropyrimidine dehydrogenase subunit B [Pseudomonas sp. TJI-51]
          Length = 424

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 4/66 (6%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV- 115
              ++ CI C  C   C   +    +     DGT     Y +   +C+ C LCQ  CPV 
Sbjct: 339 HIDQQACIGCGRCHIACEDTSHQAIASTLKADGTHA---YSVIEEECVGCNLCQITCPVE 395

Query: 116 DAIVEG 121
           + I   
Sbjct: 396 NCIDMQ 401


>gi|257416000|ref|ZP_05592994.1| formate dehydrogenase [Enterococcus faecalis AR01/DG]
 gi|257157828|gb|EEU87788.1| formate dehydrogenase [Enterococcus faecalis ARO1/DG]
          Length = 906

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 3/92 (3%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV 94
           F +G   P  + + +   +    E+CI C+ C  +C  +        +          + 
Sbjct: 133 FTEGKRMPCHQEDTSNPFFSYDPEKCIMCRRCARVCQLRQGRDVLSIANRGFETKMMPSY 192

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
               D   C  CG C  +CP  A+      E+
Sbjct: 193 GQAFDQSICESCGNCVSSCPTGALTAKDTKEY 224


>gi|237654657|ref|YP_002890971.1| ferredoxin-type protein NapF [Thauera sp. MZ1T]
 gi|237625904|gb|ACR02594.1| ferredoxin-type protein NapF [Thauera sp. MZ1T]
          Length = 188

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 27/84 (32%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E   T+   R +            C  C  C A C  +A+  E            +    
Sbjct: 61  EACPTTILVRMDGGFPGVDFSRGECSFCGDCVAACEPRALWREDASAAPWDRVAVIGAAC 120

Query: 99  DMIKCIYCGLCQEACPVDAIVEGP 122
              + + C +C EACP  AI   P
Sbjct: 121 LAARGVECRVCGEACPEGAIRFRP 144


>gi|226323506|ref|ZP_03799024.1| hypothetical protein COPCOM_01281 [Coprococcus comes ATCC 27758]
 gi|225208190|gb|EEG90544.1| hypothetical protein COPCOM_01281 [Coprococcus comes ATCC 27758]
          Length = 56

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 11/64 (17%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + C++C  CE+ CP  AI++ +               ID   C+ CG C+ ACP
Sbjct: 1   MAHVISDECVSCGACESECPVGAISMGAD-----------HMQIDASACVDCGACESACP 49

Query: 115 VDAI 118
             AI
Sbjct: 50  TGAI 53


>gi|255574746|ref|XP_002528281.1| rnase l inhibitor, putative [Ricinus communis]
 gi|223532318|gb|EEF34119.1| rnase l inhibitor, putative [Ricinus communis]
          Length = 591

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 24/56 (42%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           K C   C      +++G  C + T  +    I    CI CG+C + CP +AI    
Sbjct: 19  KKCRQECKKSCPVVKTGRLCIEVTPASKIAFISEELCIGCGICVKKCPFEAIQIIN 74


>gi|218441073|ref|YP_002379402.1| bidirectional hydrogenase complex protein HoxU [Cyanothece sp. PCC
           7424]
 gi|218173801|gb|ACK72534.1| 4Fe-4S ferredoxin, iron-sulphur binding, conserved site [Cyanothece
           sp. PCC 7424]
          Length = 238

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 4/69 (5%)

Query: 55  RYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLCQ 110
            +     RC+ C  C  +C     A   +   R  +    +        +  C  CG C 
Sbjct: 140 MFGIDHNRCVLCTRCVRVCDEIEGAHVWDVANRGANEKIISGLNQPWGTVSACTSCGKCV 199

Query: 111 EACPVDAIV 119
           +ACP  AI 
Sbjct: 200 DACPTGAIF 208


>gi|121534032|ref|ZP_01665858.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
 gi|121307543|gb|EAX48459.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
          Length = 205

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 11/62 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +++CI C +C  +CPA+ ITI+               +ID+  C  CG C + CPV AI
Sbjct: 11  DKDKCIGCGVCSKVCPAETITIKERKA-----------EIDLNNCRGCGACNQRCPVYAI 59

Query: 119 VE 120
             
Sbjct: 60  TM 61


>gi|170721018|ref|YP_001748706.1| dihydropyrimidine dehydrogenase [Pseudomonas putida W619]
 gi|169759021|gb|ACA72337.1| dihydroorotate dehydrogenase family protein [Pseudomonas putida
           W619]
          Length = 424

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 4/65 (6%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV- 115
              ++ CI C  C   C   +    +     DGT     Y +   +C+ C LCQ  CPV 
Sbjct: 339 HIDQDACIGCGRCHIACEDTSHQAIASTLKADGTHA---YSVIEDECVGCNLCQITCPVE 395

Query: 116 DAIVE 120
           + I  
Sbjct: 396 NCIDM 400


>gi|52549085|gb|AAU82934.1| hypothetical protein GZ23H9_29 [uncultured archaeon GZfos23H9]
          Length = 103

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/75 (29%), Positives = 28/75 (37%), Gaps = 12/75 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  C+ C  C  +C A AI I                 +D  +CI C  C  ACP  AI
Sbjct: 15  DETLCVGCGKCTEVCWAGAIRIIDKKAV-----------VDFSRCICCTACVRACPKGAI 63

Query: 119 VEGPNFEFATETRQE 133
              P + F    R +
Sbjct: 64  QIIP-YSFPILQRDQ 77


>gi|88603575|ref|YP_503753.1| coenzyme F420 hydrogenase [Methanospirillum hungatei JF-1]
 gi|88189037|gb|ABD42034.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanospirillum
           hungatei JF-1]
          Length = 262

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 27/75 (36%), Gaps = 13/75 (17%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +      +  C+ C  C   CP  AIT+E G             +I    CI CG C  A
Sbjct: 184 IMTKVINQGLCMGCGTCATSCPVFAITMEEGK-----------PNIQRDMCIKCGACYAA 232

Query: 113 CP--VDAIVEGPNFE 125
           CP    +      +E
Sbjct: 233 CPRAFFSFDVVNQYE 247



 Score = 37.4 bits (85), Expect = 0.67,   Method: Composition-based stats.
 Identities = 11/44 (25%), Positives = 15/44 (34%)

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           A                +   I+   C+ CG C  +CPV AI  
Sbjct: 168 ASEGSKATSSEACGCDIMTKVINQGLCMGCGTCATSCPVFAITM 211


>gi|118578740|ref|YP_899990.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing
           protein [Pelobacter propionicus DSM 2379]
 gi|118501450|gb|ABK97932.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein
           [Pelobacter propionicus DSM 2379]
          Length = 1191

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 30/91 (32%), Gaps = 16/91 (17%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP--------------- 84
             +TS   +   A+      E+ CI C +C  +CP  AI +++ P               
Sbjct: 674 PTATSQYEKRNIAVDIPVWDEKLCIQCAICSFLCPHAAIRMKAYPESCLADAPATFKSCD 733

Query: 85  -RCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            +  +              C  CG C   CP
Sbjct: 734 AKIAEVKGMKFTLQTAPEDCTGCGACVHNCP 764


>gi|332800412|ref|YP_004461911.1| hydrogenase, Fe-only [Tepidanaerobacter sp. Re1]
 gi|332698147|gb|AEE92604.1| hydrogenase, Fe-only [Tepidanaerobacter sp. Re1]
          Length = 659

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 3/70 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY---DIDMIKCIYCGLCQEACPV 115
              +CI C  C  +C         G        + V     +I  + C+ CG C   CP 
Sbjct: 142 DPNKCILCGDCVRMCEEVQGVGVLGFAYRGSNAKVVPPFNKNISEVNCVDCGQCAAVCPT 201

Query: 116 DAIVEGPNFE 125
            A+    + E
Sbjct: 202 GALTIASHME 211


>gi|323704269|ref|ZP_08115848.1| hydrogenase, Fe-only [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323536335|gb|EGB26107.1| hydrogenase, Fe-only [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 581

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI----DMIKCIYCGLCQEACP 114
              +C+ C+ C A C      + +    + G +  V        +   CI CG C EACP
Sbjct: 144 DPNKCVLCRRCVATCN-NVQNVFAIGMVNRGFKTIVAPSFGRGLNESPCISCGQCIEACP 202

Query: 115 VDAIVEGP 122
           V AI E  
Sbjct: 203 VGAIYEKD 210


>gi|323483796|ref|ZP_08089175.1| hypothetical protein HMPREF9474_00924 [Clostridium symbiosum
           WAL-14163]
 gi|323402881|gb|EGA95200.1| hypothetical protein HMPREF9474_00924 [Clostridium symbiosum
           WAL-14163]
          Length = 387

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 6/56 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
             ++C  C  C   CP +AI +             +  + D  KCI CGLC + CP
Sbjct: 8   DNKKCSGCSACYNKCPVEAIEMLPDKEG------FLYPEADKGKCIGCGLCVDVCP 57


>gi|310659593|ref|YP_003937314.1| ferredoxin [Clostridium sticklandii DSM 519]
 gi|322510027|sp|P80168|FER_CLOSD RecName: Full=Ferredoxin
 gi|308826371|emb|CBH22409.1| Ferredoxin [Clostridium sticklandii]
          Length = 56

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/58 (39%), Positives = 25/58 (43%), Gaps = 11/58 (18%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
            + CI+C  CE  CP  AIT                Y ID   CI CG C   CPVDA
Sbjct: 6   NDSCISCGACEPECPVNAITAGDDK-----------YVIDAATCIDCGACAGVCPVDA 52


>gi|260170367|ref|ZP_05756779.1| flavodoxin [Bacteroides sp. D2]
 gi|315918726|ref|ZP_07914966.1| flavodoxin [Bacteroides sp. D2]
 gi|313692601|gb|EFS29436.1| flavodoxin [Bacteroides sp. D2]
          Length = 267

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/96 (25%), Positives = 33/96 (34%), Gaps = 8/96 (8%)

Query: 29  KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88
           K   T    +E          E           RCIAC  C   CP    T++   +   
Sbjct: 157 KKTYTPLLTYEGLPLRSDGTNEVVGNVVLLNTSRCIACGKCMKSCPMNVFTLKDNAKTPL 216

Query: 89  GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
                    +D + CI CG C++ CP DA+     F
Sbjct: 217 P--------VDEMNCIMCGKCEKECPADAVFINETF 244


>gi|257086845|ref|ZP_05581206.1| formate dehydrogenase [Enterococcus faecalis D6]
 gi|256994875|gb|EEU82177.1| formate dehydrogenase [Enterococcus faecalis D6]
 gi|315027368|gb|EFT39300.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX2137]
          Length = 906

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 3/92 (3%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV 94
           F +G   P  + + +   +    E+CI C+ C  +C  +        +          + 
Sbjct: 133 FTEGKRMPCHQEDTSNPFFSYDPEKCIMCRRCARVCQLRQGRDVLSIANRGFETKMMPSY 192

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
               D   C  CG C  +CP  A+      E+
Sbjct: 193 GQAFDQSICESCGNCVSSCPTGALTAKDTKEY 224


>gi|229545925|ref|ZP_04434650.1| NAD-dependent formate dehydrogenase, alpha subunit [Enterococcus
           faecalis TX1322]
 gi|256853027|ref|ZP_05558397.1| NAD-dependent formate dehydrogenase [Enterococcus faecalis T8]
 gi|307291377|ref|ZP_07571261.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX0411]
 gi|229308993|gb|EEN74980.1| NAD-dependent formate dehydrogenase, alpha subunit [Enterococcus
           faecalis TX1322]
 gi|256711486|gb|EEU26524.1| NAD-dependent formate dehydrogenase [Enterococcus faecalis T8]
 gi|306497608|gb|EFM67141.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX0411]
 gi|315029988|gb|EFT41920.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX4000]
 gi|315166636|gb|EFU10653.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX1341]
          Length = 906

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 3/92 (3%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV 94
           F +G   P  + + +   +    E+CI C+ C  +C  +        +          + 
Sbjct: 133 FTEGKRMPCHQEDTSNPFFSYDPEKCIMCRRCARVCQLRQGRDVLSIANRGFETKMMPSY 192

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
               D   C  CG C  +CP  A+      E+
Sbjct: 193 GQAFDQSICESCGNCVSSCPTGALTAKDTKEY 224


>gi|255655141|ref|ZP_05400550.1| electron transport complex protein [Clostridium difficile
           QCD-23m63]
 gi|296451129|ref|ZP_06892870.1| electron transport complex protein RnfB [Clostridium difficile
           NAP08]
 gi|296880519|ref|ZP_06904481.1| electron transport complex protein RnfB [Clostridium difficile
           NAP07]
 gi|296259950|gb|EFH06804.1| electron transport complex protein RnfB [Clostridium difficile
           NAP08]
 gi|296428473|gb|EFH14358.1| electron transport complex protein RnfB [Clostridium difficile
           NAP07]
          Length = 323

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 23/89 (25%), Gaps = 11/89 (12%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
               I  P  +         E            CI C +C   C   AI  E        
Sbjct: 181 KGIIITKPESQEVVVECNSKEFGKAVKEKCTAGCIGCGMCVKACKFDAIIFEDKIA---- 236

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                   ID  KC+ C  C   CP   I
Sbjct: 237 -------KIDPNKCVGCMQCVAKCPTKVI 258



 Score = 41.2 bits (95), Expect = 0.043,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-----DIDMIKCIYCGLCQEAC 113
            EE+C+ C  C+ +CP   I  +   +       +  +     +     CI CG+C +AC
Sbjct: 165 DEEKCVNCGKCKEVCPKGIIITKPESQEVVVECNSKEFGKAVKEKCTAGCIGCGMCVKAC 224

Query: 114 PVDAIVEGP 122
             DAI+   
Sbjct: 225 KFDAIIFED 233



 Score = 40.9 bits (94), Expect = 0.067,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 10/81 (12%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           K  T          ++    +E C+ C +C+  C   AI  E   +            +D
Sbjct: 252 KCPTKVISGDITKKKKVTIDQELCVGCTVCKKQCKFDAIEGELKEKHK----------VD 301

Query: 100 MIKCIYCGLCQEACPVDAIVE 120
             KC+ C LC E CP  AI  
Sbjct: 302 ADKCVGCHLCMEKCPKKAIKI 322



 Score = 38.2 bits (87), Expect = 0.45,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 11/61 (18%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+    C+  C   AI+I  G              ID  KC+ CG C+E CP   I+  P
Sbjct: 140 CLGLGTCKDACKFDAISIVDGVAV-----------IDEEKCVNCGKCKEVCPKGIIITKP 188

Query: 123 N 123
            
Sbjct: 189 E 189


>gi|220904372|ref|YP_002479684.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           ATCC 27774]
 gi|219868671|gb|ACL49006.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 262

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/92 (22%), Positives = 30/92 (32%), Gaps = 19/92 (20%)

Query: 33  TINYPFEKGSTSPRFRG-EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
           T+  P  +      +RG    +   P   + C  C LC   CP Q I+ +   +   G  
Sbjct: 163 TVTVPGNRP-----YRGLPPVVDIRPKTSQSCTQCMLCATNCPMQVISFDDAAKISQG-- 215

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                      CI C  C  +CP  A      
Sbjct: 216 -----------CIRCCACVRSCPEGAKYFDQE 236


>gi|169247661|gb|ACA51661.1| HydA [Thermoanaerobacterium saccharolyticum]
          Length = 584

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI----DMIKCIYCGLCQEACP 114
              +C+ C+ C A C      + +    + G +  V        +   CI CG C EACP
Sbjct: 147 DPNKCVLCRRCVATCN-NVQNVFAIGMVNRGFKTIVAPSFGRGLNESPCISCGQCIEACP 205

Query: 115 VDAIVEGP 122
           V AI E  
Sbjct: 206 VGAIYEKD 213


>gi|126460291|ref|YP_001056569.1| putative ATPase RIL [Pyrobaculum calidifontis JCM 11548]
 gi|126250012|gb|ABO09103.1| ABC transporter related [Pyrobaculum calidifontis JCM 11548]
          Length = 589

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 19/58 (32%), Gaps = 6/58 (10%)

Query: 66  CKL-CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C   C   CP          +      +  +  I    CI CG+C   CP DAI    
Sbjct: 17  CGHECVKYCPVN-----KSGKVVYIDEQLKKAVISEALCIGCGICVHKCPFDAITIVN 69


>gi|126178658|ref|YP_001046623.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Methanoculleus marisnigri JR1]
 gi|125861452|gb|ABN56641.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Methanoculleus marisnigri JR1]
          Length = 86

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 10/65 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E C  C +C  +CP   I  +              ++ D+  C  CGLC E CP   I
Sbjct: 30  DPENCTKCGMCALVCPEGCIREKEEG----------TFEPDLNYCKGCGLCAEVCPKKGI 79

Query: 119 VEGPN 123
                
Sbjct: 80  RMEKE 84


>gi|91788043|ref|YP_548995.1| RnfABCDGE type electron transport complex subunit B [Polaromonas
           sp. JS666]
 gi|91697268|gb|ABE44097.1| electron transport complex, RnfABCDGE type, B subunit [Polaromonas
           sp. JS666]
          Length = 221

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 10/60 (16%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C LC   CP  AI          G+ + +   I+   C  C LC   CPVD I    
Sbjct: 84  CIGCTLCIKACPTDAIV---------GSNKMMHTVIEP-YCTGCELCIPVCPVDCISLEN 133



 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 14/25 (56%), Positives = 15/25 (60%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           ID   CI C LC +ACP DAIV   
Sbjct: 79  IDEAWCIGCTLCIKACPTDAIVGSN 103


>gi|77176863|gb|ABA64533.1| reductive dehalogenase protein [Dehalococcoides sp. KB1]
          Length = 500

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 60  EERCIACKLCEAICPAQAI---TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            + C  C +C  +CP+ AI     +      D T   + Y ++  +C+ C  C+  CP  
Sbjct: 389 HKFCETCGICTTVCPSNAIQVGPPQWSNNRWDNTPGYLGYRLNWGRCVLCTNCEAYCPFF 448

Query: 117 AIVEG 121
            +  G
Sbjct: 449 NMTNG 453


>gi|134301106|ref|YP_001114602.1| glycyl-radical activating family protein [Desulfotomaculum reducens
           MI-1]
 gi|134053806|gb|ABO51777.1| glycyl-radical enzyme activating protein family [Desulfotomaculum
           reducens MI-1]
          Length = 318

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 7/79 (8%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           +        G     +    E+ CI C  C  +CP Q               R++     
Sbjct: 41  RCKWCSNPEGLERKYQVMYKEDLCINCGNCTHVCPVQLHYFLDEESPRHKVNRSI----- 95

Query: 100 MIKCIYCGLCQEACPVDAI 118
              C+ C  C+ ACP  A+
Sbjct: 96  --DCVGCRKCETACPKQAL 112


>gi|323704507|ref|ZP_08116085.1| hypothetical protein ThexyDRAFT_0376 [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535969|gb|EGB25742.1| hypothetical protein ThexyDRAFT_0376 [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 364

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 9/63 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              +CI C  C   CP               +      D+  I+C+ CG C +ACP   +
Sbjct: 292 NNSKCIQCGQCNESCPM---------SIDIKSAAYYGKDVTDIRCVGCGHCVDACPTKTL 342

Query: 119 VEG 121
              
Sbjct: 343 SYT 345


>gi|319952505|ref|YP_004163772.1| 4fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Cellulophaga algicola DSM 14237]
 gi|319421165|gb|ADV48274.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Cellulophaga algicola DSM 14237]
          Length = 526

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 10/67 (14%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R +   R   NG  +CI+C  C   C           +           +I    C+ CG
Sbjct: 435 RFKSRFRITTNG-GQCISCGNCSTYCEQGIDVRAYAQKGE---------NIVRSSCVGCG 484

Query: 108 LCQEACP 114
           +C   CP
Sbjct: 485 VCSAVCP 491


>gi|315174471|gb|EFU18488.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX1346]
          Length = 906

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 3/92 (3%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV 94
           F +G   P  + + +   +    E+CI C+ C  +C  +        +          + 
Sbjct: 133 FTEGKRMPCHQEDTSNPFFSYDPEKCIMCRRCARVCQLRQGRDVLSIANRGFETKMMPSY 192

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
               D   C  CG C  +CP  A+      E+
Sbjct: 193 GQAFDQSICESCGNCVSSCPTGALTAKDTKEY 224


>gi|303248865|ref|ZP_07335114.1| Fe-S cluster domain protein [Desulfovibrio fructosovorans JJ]
 gi|302489734|gb|EFL49667.1| Fe-S cluster domain protein [Desulfovibrio fructosovorans JJ]
          Length = 582

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 11/57 (19%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
             C  C  C   CP +AI +E+G           R  +    CI CG C  ACP  A
Sbjct: 12  TECQDCYRCLRHCPVKAIQVENG-----------RATVVPELCIACGQCVAACPAHA 57


>gi|291165527|gb|EFE27577.1| ferredoxin [Filifactor alocis ATCC 35896]
 gi|320120475|gb|ADW16160.1| hypothetical protein HMPREF0389_01715 [Filifactor alocis ATCC
           35896]
          Length = 56

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 11/57 (19%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           + CI C  CE  CP  AI+               +Y ID   CI CG C   CPV A
Sbjct: 7   DSCIGCGACEGECPVGAISQGD-----------TQYIIDASACIDCGACAGVCPVGA 52



 Score = 33.9 bits (76), Expect = 7.1,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 13/22 (59%)

Query: 101 IKCIYCGLCQEACPVDAIVEGP 122
             CI CG C+  CPV AI +G 
Sbjct: 7   DSCIGCGACEGECPVGAISQGD 28


>gi|289424003|ref|ZP_06425792.1| iron hydrogenase 1 [Peptostreptococcus anaerobius 653-L]
 gi|289155578|gb|EFD04254.1| iron hydrogenase 1 [Peptostreptococcus anaerobius 653-L]
          Length = 589

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/97 (16%), Positives = 30/97 (30%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           PFE       +  +  L++      +C+ C        +  I              +   
Sbjct: 122 PFEVKYEKKAWNKDFPLQKSFEKCIKCMRCIQVCNKVQSLGIWDVVNSGYRTSVDVSWNR 181

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
            I+   C  CG C   CPV A+    + +      ++
Sbjct: 182 TIEQADCSLCGQCITHCPVGALTVRNDIDKVYRAMED 218


>gi|284050506|ref|ZP_06380716.1| bidirectional hydrogenase complex protein HoxU [Arthrospira
           platensis str. Paraca]
          Length = 238

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 30/93 (32%), Gaps = 12/93 (12%)

Query: 31  KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--QAITIESGPRCHD 88
           + T  +P  +   S    G            RCI C  C+ +C     A   +   R   
Sbjct: 124 RFTYRFPQREVDISHPQFG--------IDHNRCILCTRCQRVCDEIEGAHVWDVAFRGPA 175

Query: 89  GTRRTVRYDID--MIKCIYCGLCQEACPVDAIV 119
               T        +  C  CG C +ACP  +I 
Sbjct: 176 AKMITGLNQPWGAVDACTSCGKCVDACPTGSIF 208


>gi|258514877|ref|YP_003191099.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257778582|gb|ACV62476.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 272

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 31/88 (35%), Gaps = 15/88 (17%)

Query: 37  PFEKGSTSPRFRGEHALRRY--PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
           P+ K  T     G     R   P     C  CK+C ++CP  +I  E   + +       
Sbjct: 174 PYGKYYTPKNENGVPVDIRKVTPKTNSNCTDCKVCASVCPMGSIDYEDVSKLN------- 226

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                   CI C  C ++CP +A     
Sbjct: 227 ------GICIKCCACIKSCPTEAKYFDD 248


>gi|229585583|ref|YP_002844085.1| hypothetical protein M1627_2177 [Sulfolobus islandicus M.16.27]
 gi|238620546|ref|YP_002915372.1| hypothetical protein M164_2102 [Sulfolobus islandicus M.16.4]
 gi|228020633|gb|ACP56040.1| conserved hypothetical protein [Sulfolobus islandicus M.16.27]
 gi|238381616|gb|ACR42704.1| conserved hypothetical protein [Sulfolobus islandicus M.16.4]
          Length = 619

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRC-HDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              CI C  C ++CP    T +         +      + D+  C  CGLC++ CPV 
Sbjct: 284 FNGCILCGKCVSVCPYGEQTNDIFHTPLGFYSISYFEKENDLANCHMCGLCEQVCPVR 341



 Score = 35.1 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 9/46 (19%)

Query: 103 CIYCGLCQEACP----VDAIVEGPNFEFATETRQELYYDKERLLNN 144
           CI CG C   CP     + I   P       +    Y++KE  L N
Sbjct: 287 CILCGKCVSVCPYGEQTNDIFHTP---LGFYSIS--YFEKENDLAN 327


>gi|224539362|ref|ZP_03679901.1| hypothetical protein BACCELL_04267 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224519023|gb|EEF88128.1| hypothetical protein BACCELL_04267 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 285

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 8/63 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +  C  C  C  +CP+  +                    ++  CI CG C   CP  +I
Sbjct: 8   DKSACTQCGKCVKVCPSGVLLKLDRGSVPQVD--------NIGFCIGCGHCAAVCPNGSI 59

Query: 119 VEG 121
           V  
Sbjct: 60  VHS 62


>gi|150401639|ref|YP_001325405.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus aeolicus Nankai-3]
 gi|150014342|gb|ABR56793.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           aeolicus Nankai-3]
          Length = 398

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E+CI C +C   CP  AI +    +      + + + +D  KCI C  C E CP D I
Sbjct: 173 DTEKCIYCSVCAQTCPWNAIFV--NGKMPTKRHKKIDFKLDSEKCIGCIACAEICPGDMI 230

Query: 119 VE 120
             
Sbjct: 231 KI 232



 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID-MIKCIYCGLCQEACPVDAIVE 120
            C+ C+LC  ICP   I+I +          + +  I  M  C+ CG+C   CPV+AI  
Sbjct: 106 HCVLCELCVGICPIDIISIPNKIDNPKKEIPSPKEAIVVMDNCVGCGVCPPVCPVEAITM 165

Query: 121 GPN 123
             +
Sbjct: 166 END 168



 Score = 38.9 bits (89), Expect = 0.23,   Method: Composition-based stats.
 Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 3/73 (4%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             +       + CI C  C   CP  A+            +   R   +   C  CG C 
Sbjct: 299 IVINEESKSVKMCIVCGACATTCPTGAL---KVGNIKHNGKDYNRIVFNPSMCNSCGDCV 355

Query: 111 EACPVDAIVEGPN 123
             CP+D +     
Sbjct: 356 GVCPMDTLELVKE 368



 Score = 38.9 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 11/60 (18%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            + C+ C +C  +CP +AIT+E+               +D  KCIYC +C + CP +AI 
Sbjct: 145 MDNCVGCGVCPPVCPVEAITMENDRAV-----------VDTEKCIYCSVCAQTCPWNAIF 193


>gi|110805601|ref|YP_689121.1| electron transport complex protein RnfB [Shigella flexneri 5 str.
           8401]
 gi|110615149|gb|ABF03816.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
          Length = 192

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C  C   CP  AI   +           V + +    C    LC + CP   I
Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RVMHTVMSDLCTGFNLCVDPCPTHCI 162

Query: 119 VEGPNFEFATETRQEL 134
              P  E     + +L
Sbjct: 163 SLQPVAETPDSWKWDL 178



 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C  C +ACPVDAI
Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132


>gi|83630912|gb|ABC26909.1| HoxU [Arthrospira platensis FACHB341]
 gi|291570289|dbj|BAI92561.1| diaphorase subunit of the bidirectional hydrogenase [Arthrospira
           platensis NIES-39]
          Length = 243

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 30/93 (32%), Gaps = 12/93 (12%)

Query: 31  KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--QAITIESGPRCHD 88
           + T  +P  +   S    G            RCI C  C+ +C     A   +   R   
Sbjct: 129 RFTYRFPQREVDISHPQFG--------IDHNRCILCTRCQRVCDEIEGAHVWDVAFRGPA 180

Query: 89  GTRRTVRYDID--MIKCIYCGLCQEACPVDAIV 119
               T        +  C  CG C +ACP  +I 
Sbjct: 181 AKMITGLNQPWGAVDACTSCGKCVDACPTGSIF 213


>gi|39933211|ref|NP_945487.1| hydrogenase gamma-fused hydrogenase large and small subunit
           [Rhodopseudomonas palustris CGA009]
 gi|39652836|emb|CAE25578.1| hydrogenase gamma-fused hydrogenase large and small subunit
           [Rhodopseudomonas palustris CGA009]
          Length = 619

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 26/118 (22%), Positives = 35/118 (29%), Gaps = 14/118 (11%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           L++      L    FF  + T   P +  S S                 RC+ C+ C AI
Sbjct: 131 LQDLAQFVGLQQNRFFDRERTEARPVDHSSPS-----------MVRDMRRCVRCQRCVAI 179

Query: 73  CPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           C                 R     D        C+ CG C   CP  A+ E    + A
Sbjct: 180 CRYHQKIDALAIEGSGLERMVALRDADGYPNSVCVSCGQCVLVCPTGALGERDETDRA 237


>gi|148262232|ref|YP_001228938.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Geobacter uraniireducens Rf4]
 gi|148265604|ref|YP_001232310.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Geobacter uraniireducens Rf4]
 gi|146395732|gb|ABQ24365.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Geobacter
           uraniireducens Rf4]
 gi|146399104|gb|ABQ27737.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Geobacter
           uraniireducens Rf4]
          Length = 665

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 7/83 (8%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ C+AC  C+ +CP  A+  E   R  +G    V   ++   C  CG CQ  CP  ++
Sbjct: 590 NEKNCVACFYCKKVCPYGAVE-EKEIRDRNGNLIRVVAYVNPGVCGGCGTCQATCPSKSV 648

Query: 119 VEGPNFEFATETRQELYYDKERL 141
                 E    T +++    E L
Sbjct: 649 ------ELDGYTDEQIVAMIEAL 665



 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 25/85 (29%), Gaps = 13/85 (15%)

Query: 59  GEERCIACKLCEAICP----AQAITIESGPRC----HDGTRRTVRYDIDMIKCI-----Y 105
              +C  C +C A CP      A     G R                ID   C       
Sbjct: 239 DMAKCTGCGICMAKCPQKKIPNAFDRNMGMRPAIYVPFPQAVPNTPVIDRENCTWFKTGK 298

Query: 106 CGLCQEACPVDAIVEGPNFEFATET 130
           CG+CQ+ C   A+      E   E 
Sbjct: 299 CGVCQKVCGPGAVDYTQEDELIVEK 323


>gi|323703027|ref|ZP_08114683.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfotomaculum nigrificans DSM 574]
 gi|323532040|gb|EGB21923.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase
           [Desulfotomaculum nigrificans DSM 574]
          Length = 1027

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 13/66 (19%), Positives = 19/66 (28%), Gaps = 5/66 (7%)

Query: 59  GEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
              +CI C  C   C       A+   +            +  +    C  CG C   CP
Sbjct: 618 DPNKCILCGNCVRFCHEVVGVGALGFVNRGSDTVVLPSLKKP-LTETACNSCGQCVAVCP 676

Query: 115 VDAIVE 120
             A+  
Sbjct: 677 TGALTF 682



 Score = 37.8 bits (86), Expect = 0.58,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 24/87 (27%), Gaps = 10/87 (11%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKL-----C-----EAICPAQAITIESGPRC 86
           P  +      F             ERC++C       C           QA  +  G R 
Sbjct: 546 PDVRKVNFDEFELGFTPEMAKKEAERCLSCGCLDVFDCKLREYATELKVQANRLGFGERN 605

Query: 87  HDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           +           D  KCI CG C   C
Sbjct: 606 YPVFSDHPEIIRDPNKCILCGNCVRFC 632


>gi|323478149|gb|ADX83387.1| 4Fe-4S ferredoxin, iron-sulfur binding domain [Sulfolobus
           islandicus HVE10/4]
          Length = 619

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRC-HDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              CI C  C ++CP    T +         +      + D+  C  CGLC++ CPV 
Sbjct: 284 FNGCILCGKCVSVCPYGEQTNDIFHTPLGFYSISYFEKENDLANCHMCGLCEQVCPVR 341



 Score = 35.1 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 9/46 (19%)

Query: 103 CIYCGLCQEACP----VDAIVEGPNFEFATETRQELYYDKERLLNN 144
           CI CG C   CP     + I   P       +    Y++KE  L N
Sbjct: 287 CILCGKCVSVCPYGEQTNDIFHTP---LGFYSIS--YFEKENDLAN 327


>gi|315150636|gb|EFT94652.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX0012]
          Length = 906

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 3/92 (3%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV 94
           F +G   P  + + +   +    E+CI C+ C  +C  +        +          + 
Sbjct: 133 FTEGKRMPCHQEDTSNPFFSYDPEKCIMCRRCARVCQLRQGRDVLSIANRGFETKMMPSY 192

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
               D   C  CG C  +CP  A+      E+
Sbjct: 193 GQAFDQSICESCGNCVSSCPTGALTAKDTKEY 224


>gi|313672580|ref|YP_004050691.1| 4fe-4S ferredoxin [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939336|gb|ADR18528.1| 4Fe-4S ferredoxin [Calditerrivibrio nitroreducens DSM 19672]
          Length = 56

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/56 (41%), Positives = 24/56 (42%), Gaps = 11/56 (19%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           C  C  CE  CP  AI+   G R            ID   C  CG C E CPVDAI
Sbjct: 9   CTNCGACEDECPVGAISEADGKRV-----------IDADTCTDCGACAEVCPVDAI 53


>gi|312876536|ref|ZP_07736519.1| protein of unknown function DUF362 [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796747|gb|EFR13093.1| protein of unknown function DUF362 [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 375

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 11/62 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI C  C   CPAQAI ++S               +D+ KCI C  C E CP  AI
Sbjct: 314 DRNICIGCAECFNACPAQAIEMKSRKAY-----------VDLKKCIRCYCCHELCPAKAI 362

Query: 119 VE 120
             
Sbjct: 363 KI 364


>gi|312879724|ref|ZP_07739524.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Aminomonas
           paucivorans DSM 12260]
 gi|310783015|gb|EFQ23413.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Aminomonas
           paucivorans DSM 12260]
          Length = 375

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 10/64 (15%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C+ C  C A C   A+T+                 ID  +C+ CG C  +C   A   
Sbjct: 193 KHCVGCGACVAHCAHGAVTLGPDRIA----------RIDEERCVGCGQCIVSCAFGAAQV 242

Query: 121 GPNF 124
               
Sbjct: 243 VWEH 246


>gi|303244452|ref|ZP_07330787.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
 gi|302485150|gb|EFL48079.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanothermococcus okinawensis IH1]
          Length = 132

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 10/67 (14%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           +     +++CI C  C   CP +AIT+              +   D  +CI C  C   C
Sbjct: 73  KMIQKNDDKCIDCGACLVHCPVKAITMNED----------FKVIFDENECIGCKNCANVC 122

Query: 114 PVDAIVE 120
           PV AI  
Sbjct: 123 PVKAINI 129



 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/33 (36%), Positives = 14/33 (42%)

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
                  +  KCI CG C   CPV AI    +F
Sbjct: 71  VPKMIQKNDDKCIDCGACLVHCPVKAITMNEDF 103


>gi|257089784|ref|ZP_05584145.1| NAD-dependent formate dehydrogenase alpha subunit [Enterococcus
           faecalis CH188]
 gi|256998596|gb|EEU85116.1| NAD-dependent formate dehydrogenase alpha subunit [Enterococcus
           faecalis CH188]
          Length = 906

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 3/92 (3%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV 94
           F +G   P  + + +   +    E+CI C+ C  +C  +        +          + 
Sbjct: 133 FTEGKRMPCHQEDTSNPFFSYDPEKCIMCRRCARVCQLRQGRDVLSIANRGFETKMMPSY 192

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
               D   C  CG C  +CP  A+      E+
Sbjct: 193 GQAFDQSICESCGNCVSSCPTGALTAKDTKEY 224


>gi|225568763|ref|ZP_03777788.1| hypothetical protein CLOHYLEM_04842 [Clostridium hylemonae DSM
           15053]
 gi|225162262|gb|EEG74881.1| hypothetical protein CLOHYLEM_04842 [Clostridium hylemonae DSM
           15053]
          Length = 203

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 18/81 (22%)

Query: 44  SPRFRGEHAL------RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
           SP FR    L       +     ++C  C +C+ ICP Q I            R+    +
Sbjct: 130 SPIFRESFVLGKQGRITKGYRITDQCTGCGVCQNICPQQCI------------RKGTPCE 177

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           I    C++CGLC E CPV A+
Sbjct: 178 IAQEHCLHCGLCYENCPVRAV 198



 Score = 35.5 bits (80), Expect = 2.3,   Method: Composition-based stats.
 Identities = 22/98 (22%), Positives = 32/98 (32%), Gaps = 7/98 (7%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEE------RCIACKLCEAICPAQAITIESGPRCHDGTR 91
            ++      F    A++    G+        CI     E     ++             R
Sbjct: 85  EQREKIDRIFEENPAMKDVYPGDSRYILEAFCIEDGELEFFDLGRSPIFRESFVLGKQGR 144

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
            T  Y I   +C  CG+CQ  CP   I +G   E A E
Sbjct: 145 ITKGYRI-TDQCTGCGVCQNICPQQCIRKGTPCEIAQE 181


>gi|237809075|ref|YP_002893515.1| electron transport complex, RnfABCDGE type, C subunit [Tolumonas
           auensis DSM 9187]
 gi|237501336|gb|ACQ93929.1| electron transport complex, RnfABCDGE type, C subunit [Tolumonas
           auensis DSM 9187]
          Length = 483

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 2/64 (3%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+ C  C   CP   +T                 ++ ++ C+ CG C   CP  AI    
Sbjct: 360 CVRCGRCIGACPMS-LTPLDMVAELKVDNFGKAAEMGVMDCLLCGSCAYVCP-AAIPLTQ 417

Query: 123 NFEF 126
            F++
Sbjct: 418 YFDW 421


>gi|209525020|ref|ZP_03273564.1| ferredoxin [Arthrospira maxima CS-328]
 gi|209494429|gb|EDZ94740.1| ferredoxin [Arthrospira maxima CS-328]
          Length = 238

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 30/93 (32%), Gaps = 12/93 (12%)

Query: 31  KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--QAITIESGPRCHD 88
           + T  +P  +   S    G            RCI C  C+ +C     A   +   R   
Sbjct: 124 RFTYRFPQREVDISHPQFG--------IDHNRCILCTRCQRVCDEIEGAHVWDVAFRGPA 175

Query: 89  GTRRTVRYDID--MIKCIYCGLCQEACPVDAIV 119
               T        +  C  CG C +ACP  +I 
Sbjct: 176 AKMITGLNQPWGAVDACTSCGKCVDACPTGSIF 208


>gi|48995937|gb|AAT48558.1| putative reductive dehalogenase [Dehalococcoides sp. BAV1]
          Length = 496

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 60  EERCIACKLCEAICPAQAIT---IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            + C  C +C  +CP+ AI     +      D T   + Y ++  +C+ C  C+  CP  
Sbjct: 385 HKFCETCGICTTVCPSNAIQVGPPQWSNNRWDNTPGYLGYRLNWGRCVLCTNCETYCPFF 444

Query: 117 AIVEG 121
            +  G
Sbjct: 445 NMTNG 449


>gi|46581692|ref|YP_012500.1| glutamate synthase, iron-sulfur cluster-binding subunit
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|46451115|gb|AAS97760.1| glutamate synthase, iron-sulfur cluster-binding subunit, putative
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|311235328|gb|ADP88182.1| ferredoxin-dependent glutamate synthase [Desulfovibrio vulgaris
           RCH1]
          Length = 544

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 27/87 (31%), Gaps = 15/87 (17%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPR---------CHDGTRRTVRYDIDMIK-- 102
            +       C  C  C A+CP  AI +    +             +     Y     +  
Sbjct: 19  WQVEWDRATCALCGRCTAVCPVNAIELGVHRQRIVDAPVGLAKRPSNAHTVYHGVRQRTD 78

Query: 103 ----CIYCGLCQEACPVDAIVEGPNFE 125
               C+ CG+C   CP +AI      E
Sbjct: 79  AAYACVGCGMCTMVCPNNAIRPVHQAE 105


>gi|319936875|ref|ZP_08011287.1| hypothetical protein HMPREF9488_02121 [Coprobacillus sp. 29_1]
 gi|319808143|gb|EFW04715.1| hypothetical protein HMPREF9488_02121 [Coprobacillus sp. 29_1]
          Length = 248

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/111 (21%), Positives = 36/111 (32%), Gaps = 17/111 (15%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           L E  G      +   K   ++  P         ++  H +  +P     C  C LC   
Sbjct: 133 LNEMAGFMEEVKKRLKKQAISVYVPGNNP-----YKEYHVIPLHPKASSTCHQCGLCARR 187

Query: 73  CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           CP QAI +++              +I   +CI C  C   CP  A      
Sbjct: 188 CPVQAIPLDN------------PQEIMKGQCISCMRCVHICPQQARKCSSI 226


>gi|317484569|ref|ZP_07943475.1| NIL domain-containing protein [Bilophila wadsworthia 3_1_6]
 gi|316924168|gb|EFV45348.1| NIL domain-containing protein [Bilophila wadsworthia 3_1_6]
          Length = 149

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 9/70 (12%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
              +R  + E++C+ C +C A+CP+ A+T++   R     +          KC  C  C 
Sbjct: 79  PVAQRIWHNEDKCMQCGMCTALCPSSALTVDIKTRLLAFDK---------EKCTVCARCI 129

Query: 111 EACPVDAIVE 120
             CPV A+  
Sbjct: 130 RICPVGAMQM 139


>gi|315580792|gb|EFU92983.1| 4Fe-4S binding domain protein [Enterococcus faecalis TX0309A]
          Length = 149

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 15/69 (21%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           + RY   +++CI C  C+ +C                  +    + + ++CI CG C+ A
Sbjct: 93  IFRYRLDKDKCINCGKCKKVCQMN---------------KDSVENCNHLECIRCGRCKNA 137

Query: 113 CPVDAIVEG 121
           CPVDAI  G
Sbjct: 138 CPVDAISYG 146


>gi|315170080|gb|EFU14097.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX1342]
          Length = 906

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 3/92 (3%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV 94
           F +G   P  + + +   +    E+CI C+ C  +C  +        +          + 
Sbjct: 133 FTEGKRMPCHQEDTSNPFFSYDPEKCIMCRRCARVCQLRQGRDVLSIANRGFETKMMPSY 192

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
               D   C  CG C  +CP  A+      E+
Sbjct: 193 GQAFDQSICESCGNCVSSCPTGALTAKDTKEY 224


>gi|315147887|gb|EFT91903.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX4244]
          Length = 906

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 3/92 (3%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV 94
           F +G   P  + + +   +    E+CI C+ C  +C  +        +          + 
Sbjct: 133 FTEGKRMPCHQEDTSNPFFSYDPEKCIMCRRCARVCQLRQGRDVLSIANRGFETKMMPSY 192

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
               D   C  CG C  +CP  A+      E+
Sbjct: 193 GQAFDQSICESCGNCVSSCPTGALTAKDTKEY 224


>gi|312900656|ref|ZP_07759953.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX0470]
 gi|311292137|gb|EFQ70693.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX0470]
          Length = 906

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 3/92 (3%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV 94
           F +G   P  + + +   +    E+CI C+ C  +C  +        +          + 
Sbjct: 133 FTEGKRMPCHQEDTSNPFFSYDPEKCIMCRRCARVCQLRQGRDVLSIANRGFETKMMPSY 192

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
               D   C  CG C  +CP  A+      E+
Sbjct: 193 GQAFDQSICESCGNCVSSCPTGALTAKDTKEY 224


>gi|307288114|ref|ZP_07568124.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX0109]
 gi|306500850|gb|EFM70168.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX0109]
 gi|315164270|gb|EFU08287.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX1302]
          Length = 906

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 3/92 (3%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV 94
           F +G   P  + + +   +    E+CI C+ C  +C  +        +          + 
Sbjct: 133 FTEGKRMPCHQEDTSNPFFSYDPEKCIMCRRCARVCQLRQGRDVLSIANRGFETKMMPSY 192

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
               D   C  CG C  +CP  A+      E+
Sbjct: 193 GQAFDQSICESCGNCVSSCPTGALTAKDTKEY 224


>gi|290559230|gb|EFD92577.1| ABC transporter related protein [Candidatus Parvarchaeum
           acidophilus ARMAN-5]
          Length = 482

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 26/70 (37%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +R     E  C A   C  IC      +  G +     R   +  I    CI CG+C + 
Sbjct: 1   MRVAVIKESECEAPDNCNDICAEVCPRVREGAKETVYARENGQAAITESLCISCGICVKR 60

Query: 113 CPVDAIVEGP 122
           CP DAI    
Sbjct: 61  CPFDAIKIIN 70


>gi|257466640|ref|ZP_05630951.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315917794|ref|ZP_07914034.1| nitrogen fixation iron-sulfur protein RNFC [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313691669|gb|EFS28504.1| nitrogen fixation iron-sulfur protein RNFC [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 436

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 6/71 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP-- 114
           P   + CI C  C ++CP   +      R     +     +  ++ CI CG C   CP  
Sbjct: 359 PYKPKACIGCGKCVSVCPMS-LEPVMFARLAAFQQWEGLQNYHLMDCIECGSCAFICPAN 417

Query: 115 ---VDAIVEGP 122
               +AI  G 
Sbjct: 418 RPLTEAIKIGK 428


>gi|256962024|ref|ZP_05566195.1| formate dehydrogenase [Enterococcus faecalis Merz96]
 gi|293383047|ref|ZP_06628965.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis R712]
 gi|293388208|ref|ZP_06632729.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis S613]
 gi|312907364|ref|ZP_07766355.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis DAPTO
           512]
 gi|312909980|ref|ZP_07768828.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis DAPTO
           516]
 gi|256952520|gb|EEU69152.1| formate dehydrogenase [Enterococcus faecalis Merz96]
 gi|291079712|gb|EFE17076.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis R712]
 gi|291082392|gb|EFE19355.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis S613]
 gi|310626392|gb|EFQ09675.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis DAPTO
           512]
 gi|311289938|gb|EFQ68494.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis DAPTO
           516]
          Length = 906

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 3/92 (3%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV 94
           F +G   P  + + +   +    E+CI C+ C  +C  +        +          + 
Sbjct: 133 FTEGKRMPCHQEDTSNPFFSYDPEKCIMCRRCARVCQLRQGRDVLSIANRGFETKMMPSY 192

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
               D   C  CG C  +CP  A+      E+
Sbjct: 193 GQAFDQSICESCGNCVSSCPTGALTAKDTKEY 224


>gi|297544743|ref|YP_003677045.1| glutamate synthase [Thermoanaerobacter mathranii subsp. mathranii
           str. A3]
 gi|296842518|gb|ADH61034.1| Glutamate synthase (NADPH) [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 501

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 40/106 (37%), Gaps = 14/106 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++CI CK+C   C  +  + +             +   + + C+ C  C   CP  A+
Sbjct: 15  DYDKCINCKVCMRQCSFEVHSYDE---------HLDKMVSNDMNCVNCQRCVVLCPTQAL 65

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWES--EIVRNIVTDSPY 162
               +       R+   +  + + +   + E+   ++ ++  D PY
Sbjct: 66  TIIKH---PQTFREHANWTYDAIRDIYKQAETGGVLLSSMGNDRPY 108


>gi|322420297|ref|YP_004199520.1| hypothetical protein GM18_2798 [Geobacter sp. M18]
 gi|320126684|gb|ADW14244.1| protein of unknown function DUF162 [Geobacter sp. M18]
          Length = 711

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 31/106 (29%), Gaps = 14/106 (13%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDI 98
                R E A         +CI C  C  +CP                  GT  T  +D 
Sbjct: 286 LMDNQRTEMAKDPKFKQALQCIRCGSCLNVCPIFRLVGGHVFGKVYTGGIGTILTAWFDE 345

Query: 99  ------DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
                     CI CG C + CP          E   E R+ L  +K
Sbjct: 346 LKKSEEIQGLCIQCGNCTQVCPGKL----DIPEMILEIRRRLVLEK 387


>gi|237795239|ref|YP_002862791.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum Ba4
           str. 657]
 gi|229260949|gb|ACQ51982.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum Ba4
           str. 657]
          Length = 574

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 11/77 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +         C  C  C   CP +AI  ++              +I   +CI CG C   
Sbjct: 1   MNYIDISGLNCKNCYKCLRACPVKAIKFKNEKA-----------EIVEERCISCGRCLVI 49

Query: 113 CPVDAIVEGPNFEFATE 129
           CP +A  + P+ ++  +
Sbjct: 50  CPQNAKKDKPDIKYVKD 66



 Score = 33.5 bits (75), Expect = 8.9,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 14/35 (40%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           DI  + C  C  C  ACPV AI          E R
Sbjct: 5   DISGLNCKNCYKCLRACPVKAIKFKNEKAEIVEER 39


>gi|227357618|ref|ZP_03841971.1| possible [formate-C-acetyltransferase]-activating enzyme [Proteus
           mirabilis ATCC 29906]
 gi|227162328|gb|EEI47332.1| possible [formate-C-acetyltransferase]-activating enzyme [Proteus
           mirabilis ATCC 29906]
          Length = 316

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 5/74 (6%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           +        G  +  +     ++C+ C  C  +CPA    + +  +     R     D  
Sbjct: 37  RCPWCSNPEGLSSEFQVMYSRDKCVDCGKCVDVCPAGVHYMTTNEQGQQVHRVDRAVD-- 94

Query: 100 MIKCIYCGLCQEAC 113
              CI C  C+E C
Sbjct: 95  ---CIGCRQCEEVC 105



 Score = 34.7 bits (78), Expect = 4.0,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 13/48 (27%)

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                       +G     +      KC+ CG C + CP        N
Sbjct: 33  GCNIRCPWCSNPEGLSSEFQVMYSRDKCVDCGKCVDVCPAGVHYMTTN 80


>gi|227498571|ref|ZP_03928715.1| nitroreductase [Acidaminococcus sp. D21]
 gi|226904027|gb|EEH89945.1| nitroreductase [Acidaminococcus sp. D21]
          Length = 270

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 10/63 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +E+C  C  C  +CP+  + +++               I+ + C+ CG C   CP  A+
Sbjct: 8   DKEKCTRCGTCAKVCPSCILEMDTEGPV----------CINDLSCMSCGHCVAVCPTGAL 57

Query: 119 VEG 121
              
Sbjct: 58  DNS 60



 Score = 35.1 bits (79), Expect = 3.1,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 11/27 (40%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPN 123
            ID  KC  CG C + CP   +     
Sbjct: 6   TIDKEKCTRCGTCAKVCPSCILEMDTE 32


>gi|160887227|ref|ZP_02068230.1| hypothetical protein BACOVA_05244 [Bacteroides ovatus ATCC 8483]
 gi|156107638|gb|EDO09383.1| hypothetical protein BACOVA_05244 [Bacteroides ovatus ATCC 8483]
          Length = 266

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 12/77 (15%)

Query: 51  HALRRYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGT--------RRTVRYDI 98
              + +     +CI C  C A CP    ++ I   + P+              +  R   
Sbjct: 144 ERWKYWMEEMSKCIKCYACRAACPLCYCSRCIVEVNCPQWVQPWSAPLTNMEWQINRVMH 203

Query: 99  DMIKCIYCGLCQEACPV 115
              +CI CG C++ACPV
Sbjct: 204 MAGRCIGCGACKQACPV 220


>gi|94269861|ref|ZP_01291586.1| 4Fe-4S ferredoxin, iron-sulfur binding:Zn-finger, C2H2 type [delta
           proteobacterium MLMS-1]
 gi|93451045|gb|EAT02004.1| 4Fe-4S ferredoxin, iron-sulfur binding:Zn-finger, C2H2 type [delta
           proteobacterium MLMS-1]
          Length = 684

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 9/60 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++ C  CK+C  ICP +AI  +   +            I+ + C  CG C  ACP+ AI
Sbjct: 615 DQQCCTGCKICRNICPYRAIGFDEEKQVAV---------INRVLCRGCGTCAAACPLTAI 665



 Score = 34.7 bits (78), Expect = 4.4,   Method: Composition-based stats.
 Identities = 10/17 (58%), Positives = 13/17 (76%)

Query: 98  IDMIKCIYCGLCQEACP 114
           +D+ +CI CG C EACP
Sbjct: 240 VDLGRCIGCGECIEACP 256



 Score = 34.3 bits (77), Expect = 6.1,   Method: Composition-based stats.
 Identities = 23/87 (26%), Positives = 27/87 (31%), Gaps = 10/87 (11%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV--- 94
            E       F  +   R       RCI C  C   CPA+   +E G              
Sbjct: 220 EEVSGFLGNFLVKVRQRPRFVDLGRCIGCGECIEACPAERAGVEGGKCKAIDFAVPGALP 279

Query: 95  -RYDIDMIKCIY------CGLCQEACP 114
               ID   C+       C LCQ ACP
Sbjct: 280 NVPKIDPDLCLRGGSDPECRLCQAACP 306


>gi|29375957|ref|NP_815111.1| NAD-dependent formate dehydrogenase, alpha subunit [Enterococcus
           faecalis V583]
 gi|227518656|ref|ZP_03948705.1| NAD-dependent formate dehydrogenase, alpha subunit [Enterococcus
           faecalis TX0104]
 gi|227553187|ref|ZP_03983236.1| NAD-dependent formate dehydrogenase, alpha subunit [Enterococcus
           faecalis HH22]
 gi|256965223|ref|ZP_05569394.1| formate dehydrogenase [Enterococcus faecalis HIP11704]
 gi|257419202|ref|ZP_05596196.1| formate dehydrogenase [Enterococcus faecalis T11]
 gi|307273326|ref|ZP_07554571.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX0855]
 gi|29343419|gb|AAO81181.1| NAD-dependent formate dehydrogenase, alpha subunit [Enterococcus
           faecalis V583]
 gi|227073913|gb|EEI11876.1| NAD-dependent formate dehydrogenase, alpha subunit [Enterococcus
           faecalis TX0104]
 gi|227177679|gb|EEI58651.1| NAD-dependent formate dehydrogenase, alpha subunit [Enterococcus
           faecalis HH22]
 gi|256955719|gb|EEU72351.1| formate dehydrogenase [Enterococcus faecalis HIP11704]
 gi|257161030|gb|EEU90990.1| formate dehydrogenase [Enterococcus faecalis T11]
 gi|306509853|gb|EFM78878.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX0855]
 gi|315575554|gb|EFU87745.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis
           TX0309B]
 gi|315580004|gb|EFU92195.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis
           TX0309A]
          Length = 906

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 3/92 (3%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV 94
           F +G   P  + + +   +    E+CI C+ C  +C  +        +          + 
Sbjct: 133 FTEGKRMPCHQEDTSNPFFSYDPEKCIMCRRCARVCQLRQGRDVLSIANRGFETKMMPSY 192

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
               D   C  CG C  +CP  A+      E+
Sbjct: 193 GQAFDQSICESCGNCVSSCPTGALTAKDTKEY 224


>gi|327400690|ref|YP_004341529.1| pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta
           [Archaeoglobus veneficus SNP6]
 gi|327316198|gb|AEA46814.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Archaeoglobus veneficus SNP6]
          Length = 160

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 10/69 (14%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
              +    E RC+ C +C   CP   + +               ++ D   C  CG+C E
Sbjct: 97  VCPQETQCEIRCVECGICWMYCPEGCMVLNEEG----------FFEPDYDYCKGCGICAE 146

Query: 112 ACPVDAIVE 120
            CP+ AI  
Sbjct: 147 VCPLGAITM 155


>gi|307243124|ref|ZP_07525298.1| ferredoxin [Peptostreptococcus stomatis DSM 17678]
 gi|306493484|gb|EFM65463.1| ferredoxin [Peptostreptococcus stomatis DSM 17678]
          Length = 287

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 5/69 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-----DIDMIKCIYCGLCQEAC 113
            EE+C+ C  C  ICP   I  +   +      ++  +     D   + CI CG+C + C
Sbjct: 165 DEEKCVNCGKCIDICPKGLIERKPANKAVTVQCKSNDFGKKVKDNCSVGCIGCGICFKEC 224

Query: 114 PVDAIVEGP 122
           P DAI+   
Sbjct: 225 PFDAIIFED 233



 Score = 40.9 bits (94), Expect = 0.067,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 25/82 (30%), Gaps = 11/82 (13%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P  K  T      +   +   N    CI C +C   CP  AI  E               
Sbjct: 188 PANKAVTVQCKSNDFGKKVKDNCSVGCIGCGICFKECPFDAIIFEDKLA----------- 236

Query: 97  DIDMIKCIYCGLCQEACPVDAI 118
            ID  KC  C  C   CP   I
Sbjct: 237 RIDYDKCKQCNKCAMKCPTKVI 258


>gi|317133642|ref|YP_004092956.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Ethanoligenens
           harbinense YUAN-3]
 gi|315471621|gb|ADU28225.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Ethanoligenens
           harbinense YUAN-3]
          Length = 1180

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 32/101 (31%), Gaps = 17/101 (16%)

Query: 28  FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI-----ES 82
           FK +    +P  +GS +   RG           E CI C  C  +CP   I       + 
Sbjct: 664 FKGREDGTFP--QGSAAYEKRGIAVDVPEWQ-PENCIQCNFCSYVCPHAVIRPFVLTADE 720

Query: 83  GPRCHDGTRRT-------VRYDIDMI--KCIYCGLCQEACP 114
             +     +           + I+     C  CG C   CP
Sbjct: 721 AEKAPASMKHKPATALAGFEFSINPSVLDCTGCGSCANVCP 761


>gi|282857225|ref|ZP_06266469.1| ferredoxin [Pyramidobacter piscolens W5455]
 gi|282585011|gb|EFB90335.1| ferredoxin [Pyramidobacter piscolens W5455]
          Length = 279

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/84 (26%), Positives = 30/84 (35%), Gaps = 11/84 (13%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
             P +K                      CI C++C  +CP Q I+++             
Sbjct: 191 MVPKKKMVHVACSNPMPGAFVRKVCTVGCIGCQMCVKVCPKQTISMKGALAV-------- 242

Query: 95  RYDIDMIKCIYCGLCQEACPVDAI 118
              ID   C+ CGLC   CPV AI
Sbjct: 243 ---IDPSNCVNCGLCAAKCPVHAI 263



 Score = 41.6 bits (96), Expect = 0.037,   Method: Composition-based stats.
 Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 5/67 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEAC 113
             ++C+ C+ C   CP   I +    +                 +  + CI C +C + C
Sbjct: 170 DRDKCVGCQACVEACPRGIIAMVPKKKMVHVACSNPMPGAFVRKVCTVGCIGCQMCVKVC 229

Query: 114 PVDAIVE 120
           P   I  
Sbjct: 230 PKQTISM 236



 Score = 38.9 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 11/60 (18%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+    C   C   AI + +G              +D  KC+ C  C EACP   I   P
Sbjct: 145 CMGFGTCVKACKFDAIHVING-----------VAKVDRDKCVGCQACVEACPRGIIAMVP 193


>gi|257414386|ref|ZP_04746152.2| iron-sulfur cluster-binding protein [Roseburia intestinalis L1-82]
 gi|257200236|gb|EEU98520.1| iron-sulfur cluster-binding protein [Roseburia intestinalis L1-82]
          Length = 302

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 21/61 (34%), Gaps = 15/61 (24%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              RCI C  C+  C       ++                    CI CG C +ACP DAI
Sbjct: 239 ENSRCIGCGQCQKACKMDVDVCKTPDHPE---------------CIRCGACIKACPKDAI 283

Query: 119 V 119
            
Sbjct: 284 H 284


>gi|224369308|ref|YP_002603472.1| HdrL1 [Desulfobacterium autotrophicum HRM2]
 gi|223692025|gb|ACN15308.1| HdrL1 [Desulfobacterium autotrophicum HRM2]
          Length = 1482

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 6/62 (9%)

Query: 59   GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                C +C +C +ICP  A +  +  R         + +I+ + C  CGLC  +C   A+
Sbjct: 1408 DPMVCSSCGVCVSICPYSAPSFATEGRFKG------KAEINPVLCKGCGLCVASCRSGAL 1461

Query: 119  VE 120
              
Sbjct: 1462 HL 1463



 Score = 38.5 bits (88), Expect = 0.28,   Method: Composition-based stats.
 Identities = 16/34 (47%), Positives = 16/34 (47%), Gaps = 3/34 (8%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           ID  KC  CG C EACPV        FE    TR
Sbjct: 104 IDTAKCTGCGECAEACPVT---LPSIFEQGLTTR 134


>gi|222100041|ref|YP_002534609.1| Fe-hydrogenase alpha subunit [Thermotoga neapolitana DSM 4359]
 gi|221572431|gb|ACM23243.1| Fe-hydrogenase alpha subunit [Thermotoga neapolitana DSM 4359]
          Length = 645

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 3/70 (4%)

Query: 59  GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQEACPV 115
              +CI C  C  +C   Q + +    +    +  T  ++  +   +C++CG C   CP 
Sbjct: 139 DTSKCILCGDCVRVCEEVQGVGVIEFAKRGFESVVTTAFNTPLAETECVFCGQCVAYCPT 198

Query: 116 DAIVEGPNFE 125
            A+    + +
Sbjct: 199 GALSIRNDID 208


>gi|167770888|ref|ZP_02442941.1| hypothetical protein ANACOL_02241 [Anaerotruncus colihominis DSM
           17241]
 gi|167666928|gb|EDS11058.1| hypothetical protein ANACOL_02241 [Anaerotruncus colihominis DSM
           17241]
          Length = 437

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 11/59 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
             ++C  C  C   CP +AI +  G              I   +CI CG C   CP  A
Sbjct: 13  DRDKCHGCINCVKRCPTEAIRVRGGKA-----------KIIKERCIDCGECIRVCPHHA 60


>gi|163644682|gb|ABY28334.1| putative reductive dehalogenase [Dehalococcoides sp. enrichment
           culture clone RC71(RCRdA15)]
          Length = 472

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 27/83 (32%), Gaps = 17/83 (20%)

Query: 60  EERCIACKLCEAICPAQAITIESGP-----RCHDGTRRTVRYDIDMIKCI---------- 104
            + C  CK C  +CP+ AI IE  P                Y ++   C           
Sbjct: 333 WKFCQTCKKCAEMCPSGAIPIEGDPSYTIEHPESNGYGLKSYHVNYDNCHPYRGNPGSVV 392

Query: 105 --YCGLCQEACPVDAIVEGPNFE 125
              CG+CQ  C    +  G   E
Sbjct: 393 NGGCGICQNVCVFSKMEGGNIHE 415


>gi|15791257|ref|NP_281081.1| ferredoxin [Halobacterium sp. NRC-1]
 gi|169237015|ref|YP_001690215.1| ferredoxin (3Fe-4S)(4Fe-4S) [Halobacterium salinarum R1]
 gi|10581890|gb|AAG20561.1| ferredoxin [Halobacterium sp. NRC-1]
 gi|167728081|emb|CAP14869.1| ferredoxin (3Fe-4S)(4Fe-4S) [Halobacterium salinarum R1]
          Length = 106

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 2/78 (2%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100
           G      +            + C+A   C   CP         P   +  R+    +   
Sbjct: 24  GPVEEPEKLGVHGTHVAVDFDICLADGACLEDCPVDVFEWVETPDHPESERKADPAN--E 81

Query: 101 IKCIYCGLCQEACPVDAI 118
            +CI C LC + CPVDAI
Sbjct: 82  TQCIDCMLCVDVCPVDAI 99


>gi|167036651|ref|YP_001664229.1| hydrogenase with PAS/PAC sensor [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|166855485|gb|ABY93893.1| hydrogenase with PAS/PAC sensor [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
          Length = 577

 Score = 43.2 bits (100), Expect = 0.011,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 25/73 (34%), Gaps = 11/73 (15%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             L      +  C  C  C   CP +AI +  G             ++    CIYCG C 
Sbjct: 1   MILDVISVSKANCKNCYRCVRHCPVKAIKVVGGQA-----------EVVDSLCIYCGRCV 49

Query: 111 EACPVDAIVEGPN 123
             CP +A     +
Sbjct: 50  IECPQNAKKIRND 62


>gi|323475428|gb|ADX86034.1| 4Fe-4S ferredoxin, iron-sulfur binding domain [Sulfolobus
           islandicus REY15A]
          Length = 619

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRC-HDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              CI C  C ++CP    T +         +      + D+  C  CGLC++ CPV 
Sbjct: 284 FNGCILCGKCVSVCPYGEQTNDIFHTPLGFYSISYFEKENDLANCHMCGLCEQVCPVR 341



 Score = 35.1 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 9/46 (19%)

Query: 103 CIYCGLCQEACP----VDAIVEGPNFEFATETRQELYYDKERLLNN 144
           CI CG C   CP     + I   P       +    Y++KE  L N
Sbjct: 287 CILCGKCVSVCPYGEQTNDIFHTP---LGFYSIS--YFEKENDLAN 327


>gi|312904134|ref|ZP_07763302.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX0635]
 gi|310632610|gb|EFQ15893.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX0635]
          Length = 906

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 3/92 (3%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV 94
           F +G   P  + + +   +    E+CI C+ C  +C  +        +          + 
Sbjct: 133 FTEGKRMPCHQEDTSNPFFSYDPEKCIMCRRCARVCQLRQGRDVLSIANRGFETKMMPSY 192

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
               D   C  CG C  +CP  A+      E+
Sbjct: 193 GQAFDQSICESCGNCVSSCPTGALTAKDTKEY 224


>gi|298675715|ref|YP_003727465.1| pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta
           [Methanohalobium evestigatum Z-7303]
 gi|298288703|gb|ADI74669.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Methanohalobium evestigatum Z-7303]
          Length = 86

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 10/82 (12%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E G+T     G     +     ++CI CKLCE +CP +AI                 ++ 
Sbjct: 10  EPGTTKKNKTGGWRNYKPIFLYDKCIKCKLCELLCPDEAINPREDG----------FFEY 59

Query: 99  DMIKCIYCGLCQEACPVDAIVE 120
           D   C  CG+C   CPV AI  
Sbjct: 60  DYDYCKGCGVCANECPVSAIEM 81


>gi|297619788|ref|YP_003707893.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanococcus voltae A3]
 gi|297378765|gb|ADI36920.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus
           voltae A3]
          Length = 659

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 26/70 (37%), Gaps = 7/70 (10%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             + R    E+ C  CK+C  +CP  AIT E            V        C  CG C 
Sbjct: 572 IEMIRATVDEDVCGGCKVCAIMCPYNAITYEEKEGHLVAITDDVA-------CKGCGACA 624

Query: 111 EACPVDAIVE 120
            ACP  A+  
Sbjct: 625 GACPSGAMQL 634



 Score = 40.5 bits (93), Expect = 0.072,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 24/75 (32%), Gaps = 7/75 (9%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAIT-------IESGPRCHDGTRRTVRYDI 98
            F  +   +     E  C  C  C A+CP +                        + Y I
Sbjct: 229 NFNVKLEKKARYIDEITCTGCGACAAVCPIEIPNEFDLGLGTRKAIYVPFPQAVPLVYTI 288

Query: 99  DMIKCIYCGLCQEAC 113
           DM  CI C LC + C
Sbjct: 289 DMEHCINCELCSKVC 303



 Score = 35.5 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 3/35 (8%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132
           ID I C  CG C   CP   I     F+    TR+
Sbjct: 241 IDEITCTGCGACAAVCP---IEIPNEFDLGLGTRK 272


>gi|294495036|ref|YP_003541529.1| pyruvate ferredoxin oxidoreductase, subunit delta
           [Methanohalophilus mahii DSM 5219]
 gi|292666035|gb|ADE35884.1| pyruvate ferredoxin oxidoreductase, delta subunit
           [Methanohalophilus mahii DSM 5219]
          Length = 86

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 10/82 (12%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E G+T     G     R     ++CI CKLCE +CP  A+            R    ++ 
Sbjct: 10  EPGTTRLNKTGGWRTFRPVYDYDKCIKCKLCELLCPDMAVLP----------RDDGFFEF 59

Query: 99  DMIKCIYCGLCQEACPVDAIVE 120
           D   C  CG+C   CP +AI  
Sbjct: 60  DYDYCKGCGICANECPTEAIDM 81


>gi|290996101|ref|XP_002680621.1| dihydroorotate dehydrogenase family protein [Naegleria gruberi]
 gi|284094242|gb|EFC47877.1| dihydroorotate dehydrogenase family protein [Naegleria gruberi]
          Length = 1038

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 7/65 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117
            +++CI C  C   C       +SG +     + T    +    C  C LC   CPV D 
Sbjct: 940 NDDKCINCGKCYLTCN------DSGYQAISFDKDTHIPKVSDDDCTGCTLCYSVCPVLDC 993

Query: 118 IVEGP 122
           I   P
Sbjct: 994 IEMVP 998


>gi|326201303|ref|ZP_08191175.1| hydrogenase, Fe-only [Clostridium papyrosolvens DSM 2782]
 gi|325988871|gb|EGD49695.1| hydrogenase, Fe-only [Clostridium papyrosolvens DSM 2782]
          Length = 562

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 7/94 (7%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRY 96
           EK        G   +R       +CI C  C   C        ++   R  +    T   
Sbjct: 125 EKKEMPIDDLGPSIIR----NPNKCILCGDCVRACQEIQGVGVLDFAYRGSNLQVTTAFN 180

Query: 97  D-IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
             +  + C+ CG C+  CP  A++   + + A E
Sbjct: 181 KSLQEVDCVNCGQCRVVCPTGALMIKKDIDRAYE 214


>gi|256830133|ref|YP_003158861.1| glycyl-radical enzyme activating family protein [Desulfomicrobium
           baculatum DSM 4028]
 gi|256579309|gb|ACU90445.1| glycyl-radical enzyme activating protein family [Desulfomicrobium
           baculatum DSM 4028]
          Length = 306

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 11/58 (18%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
            ++C+ C  C   CP  A++        +              C  CG+C E CP  A
Sbjct: 57  PDKCVGCGECVEACPQGALSPGPDGMLRN-----------QDACTACGVCAEVCPALA 103



 Score = 40.9 bits (94), Expect = 0.057,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 100 MIKCIYCGLCQEACPVDAIVEGPN 123
             KC+ CG C EACP  A+  GP+
Sbjct: 57  PDKCVGCGECVEACPQGALSPGPD 80


>gi|256372222|ref|YP_003110046.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008806|gb|ACU54373.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase
           [Acidimicrobium ferrooxidans DSM 10331]
          Length = 762

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 9/58 (15%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           +RC  C+ C   CP +AI ++                +D  +C+ C  C+  CP DAI
Sbjct: 11  DRCAGCQECLIRCPVEAIDLDLD---------RYVVTVDSARCVGCRQCERVCPFDAI 59


>gi|256371808|ref|YP_003109632.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Acidimicrobium ferrooxidans DSM 10331]
 gi|256008392|gb|ACU53959.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Acidimicrobium ferrooxidans DSM 10331]
          Length = 512

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/83 (28%), Positives = 29/83 (34%), Gaps = 23/83 (27%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG---------LC 109
            +  CI CK C A CP  AI I                D    KC +C           C
Sbjct: 95  NKAICIGCKACMAACPYDAIFINPE-------------DHSAEKCNFCAHRLDIGLEPAC 141

Query: 110 QEACPVDAIVEGP-NFEFATETR 131
              CP +AI+ G    + A  TR
Sbjct: 142 VVVCPTEAILIGKLEDDTARATR 164



 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 23/86 (26%), Positives = 26/86 (30%), Gaps = 12/86 (13%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYD 97
           +        G     R      RC  C    C A CP  A+            R     D
Sbjct: 44  RTYVKAVEVGTFPQVRRSFQVTRCNQCTNPPCVAACPTGAMYQ----------RPDGIVD 93

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPN 123
            +   CI C  C  ACP DAI   P 
Sbjct: 94  FNKAICIGCKACMAACPYDAIFINPE 119



 Score = 41.6 bits (96), Expect = 0.040,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 7/72 (9%)

Query: 59  GEERCIACKLCEAICPAQAI-----TIESGPRCHDGTRRTVRYDIDMIKCIYCGL--CQE 111
            + +CI C  C   C ++       T         GT   VR    + +C  C    C  
Sbjct: 18  DQTKCIGCHACTTACKSENQVPLGVTRTYVKAVEVGTFPQVRRSFQVTRCNQCTNPPCVA 77

Query: 112 ACPVDAIVEGPN 123
           ACP  A+ + P+
Sbjct: 78  ACPTGAMYQRPD 89


>gi|258516624|ref|YP_003192846.1| ferredoxin [Desulfotomaculum acetoxidans DSM 771]
 gi|257780329|gb|ACV64223.1| ferredoxin [Desulfotomaculum acetoxidans DSM 771]
          Length = 312

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 22/67 (32%), Gaps = 3/67 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM---IKCIYCGLCQEACPV 115
              +CI C  C + C A                + V           C+YCG C   CPV
Sbjct: 143 DPNKCILCGRCVSTCNAIPERSVIDFGYRGFNTKIVTGMDLPLAESDCVYCGRCVAVCPV 202

Query: 116 DAIVEGP 122
            A+   P
Sbjct: 203 GALTWKP 209


>gi|255594150|ref|XP_002536031.1| formate dehydrogenase, putative [Ricinus communis]
 gi|223521136|gb|EEF26352.1| formate dehydrogenase, putative [Ricinus communis]
          Length = 588

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/84 (21%), Positives = 27/84 (32%), Gaps = 9/84 (10%)

Query: 55  RYPNGEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
            +     +CI C  C   C        +    R  D        D    +C+ CG C +A
Sbjct: 30  YFTFDASKCIVCSRCVRACEETQGTFALTIQGRGFDSKVSAGGKDFLESECVSCGACVQA 89

Query: 113 CPVDAIVE-------GPNFEFATE 129
           CP   ++E        P  +  T 
Sbjct: 90  CPTATLMEKTVIDAGTPEHKITTT 113


>gi|188588165|ref|YP_001921458.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium
           botulinum E3 str. Alaska E43]
 gi|188498446|gb|ACD51582.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium
           botulinum E3 str. Alaska E43]
          Length = 1172

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 32/105 (30%), Gaps = 20/105 (19%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI----------------- 80
           F  G+T+   RG          +++CI C  C  +CP   I                   
Sbjct: 668 FMAGTTAYEKRGIAVNVPEWL-QDKCIQCNQCSYVCPHATIRPFLLNEEEKSKAPSSIKL 726

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD--AIVEGPN 123
                     +      +  + C  CG C E CP    A++  P 
Sbjct: 727 IEPKALKSDEKLYYSIGVTPLDCTGCGNCVEVCPAPGKALIMKPQ 771


>gi|160891808|ref|ZP_02072811.1| hypothetical protein BACUNI_04265 [Bacteroides uniformis ATCC 8492]
 gi|156858286|gb|EDO51717.1| hypothetical protein BACUNI_04265 [Bacteroides uniformis ATCC 8492]
          Length = 498

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 3/89 (3%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C AC+LC ++CP Q +   S          +        +   C  C E CP DAI  
Sbjct: 348 QHCTACQLCVSVCPNQVLRPSSDLTKLMQPEMSYERGYCRPE---CAKCAEVCPTDAIHL 404

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWE 149
               E +        + KE  +   D+ E
Sbjct: 405 TSLAEKSAVQIGHAVWIKENCICITDKME 433



 Score = 41.6 bits (96), Expect = 0.033,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 6/63 (9%)

Query: 56  YPNGEERCIA----CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           +      CI     C  C   CPA AI +       + + +     ++  +CI CG C+ 
Sbjct: 420 WIKENCICITDKMECGNCTRHCPAGAIQMVPSDPEDEASIKIPV--VNAERCIGCGACEN 477

Query: 112 ACP 114
            CP
Sbjct: 478 LCP 480



 Score = 38.5 bits (88), Expect = 0.32,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 4/61 (6%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRY----DIDMIKCIYCGLCQEACPVDAIVEG 121
           C  C  +CP  AI + S             +     I +   + CG C   CP  AI   
Sbjct: 390 CAKCAEVCPTDAIHLTSLAEKSAVQIGHAVWIKENCICITDKMECGNCTRHCPAGAIQMV 449

Query: 122 P 122
           P
Sbjct: 450 P 450



 Score = 37.4 bits (85), Expect = 0.65,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 13/75 (17%)

Query: 47  FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
           F  +++L +     ++C +C LC   C A  I I++             ++ID  +C+ C
Sbjct: 208 FLSKYSLLKPVIDTKKCNSCGLCARNCKASCINIKA-------------HEIDYSRCVAC 254

Query: 107 GLCQEACPVDAIVEG 121
             C   C   AI   
Sbjct: 255 MDCINKCRKGAITYT 269


>gi|126737492|ref|ZP_01753222.1| iron-sulfur cluster-binding protein [Roseobacter sp. SK209-2-6]
 gi|126720885|gb|EBA17589.1| iron-sulfur cluster-binding protein [Roseobacter sp. SK209-2-6]
          Length = 330

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 9/62 (14%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C  C+ C  +CP  A+ + +            R  +    C+ CG+C  AC   A+  
Sbjct: 222 QNCNMCRACVWLCPTGALGLSAED---------GRLTLTENSCVQCGICVSACSQKALDL 272

Query: 121 GP 122
            P
Sbjct: 273 TP 274


>gi|146303090|ref|YP_001190406.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Metallosphaera sedula DSM 5348]
 gi|145701340|gb|ABP94482.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Metallosphaera sedula DSM 5348]
          Length = 404

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           ++C  C        + ++S P             ID  KCI CG CQ ACP +A+    +
Sbjct: 57  MSCNHC-----DNPVCMKSCPAVAISKNEMGIVTIDSNKCIGCGYCQWACPYEALHFSKD 111



 Score = 39.3 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 17/90 (18%), Positives = 27/90 (30%), Gaps = 6/90 (6%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
             + P    S       ++ +        +CI C  C+  CP +A+              
Sbjct: 61  HCDNPVCMKSCPAVAISKNEMGIVTIDSNKCIGCGYCQWACPYEALHFSKDGTMGKCHLC 120

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
             R    M        C E+CP  A+  G 
Sbjct: 121 VDRLGKGMPY------CVESCPTGALTFGW 144


>gi|118594444|ref|ZP_01551791.1| electron transport complex protein RnfB [Methylophilales bacterium
           HTCC2181]
 gi|118440222|gb|EAV46849.1| electron transport complex protein RnfB [Methylophilales bacterium
           HTCC2181]
          Length = 188

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/82 (25%), Positives = 26/82 (31%), Gaps = 10/82 (12%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E    +               E+ CI C LC   CP  AI   +             + I
Sbjct: 89  EYKPLNEEHGAIKPKSIAIIDEDTCIGCTLCIQACPVDAILGSAK----------HMHTI 138

Query: 99  DMIKCIYCGLCQEACPVDAIVE 120
              +C  C LC   CPVD I  
Sbjct: 139 IEKECTGCELCLPPCPVDCIDM 160


>gi|254974676|ref|ZP_05271148.1| electron transport complex protein [Clostridium difficile
           QCD-66c26]
 gi|255092064|ref|ZP_05321542.1| electron transport complex protein [Clostridium difficile CIP
           107932]
 gi|255100156|ref|ZP_05329133.1| electron transport complex protein [Clostridium difficile
           QCD-63q42]
 gi|255306046|ref|ZP_05350218.1| electron transport complex protein [Clostridium difficile ATCC
           43255]
 gi|255313801|ref|ZP_05355384.1| electron transport complex protein [Clostridium difficile
           QCD-76w55]
 gi|255516482|ref|ZP_05384158.1| electron transport complex protein [Clostridium difficile
           QCD-97b34]
 gi|255649582|ref|ZP_05396484.1| electron transport complex protein [Clostridium difficile
           QCD-37x79]
 gi|260682746|ref|YP_003214031.1| electron transport complex protein [Clostridium difficile CD196]
 gi|260686344|ref|YP_003217477.1| electron transport complex protein [Clostridium difficile R20291]
 gi|306519708|ref|ZP_07406055.1| electron transport complex protein [Clostridium difficile
           QCD-32g58]
 gi|260208909|emb|CBA61897.1| electron transport complex protein [Clostridium difficile CD196]
 gi|260212360|emb|CBE03172.1| electron transport complex protein [Clostridium difficile R20291]
          Length = 323

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 23/89 (25%), Gaps = 11/89 (12%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
               I  P  +         E            CI C +C   C   AI  E        
Sbjct: 181 KGIIITKPESQEVVVECNSKEFGKAVKEKCTAGCIGCGMCVKACKFDAIIFEDKIA---- 236

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                   ID  KC+ C  C   CP   I
Sbjct: 237 -------KIDPNKCVGCMQCVAKCPTKVI 258



 Score = 41.2 bits (95), Expect = 0.044,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-----DIDMIKCIYCGLCQEAC 113
            EE+C+ C  C+ +CP   I  +   +       +  +     +     CI CG+C +AC
Sbjct: 165 DEEKCVNCGKCKEVCPKGIIITKPESQEVVVECNSKEFGKAVKEKCTAGCIGCGMCVKAC 224

Query: 114 PVDAIVEGP 122
             DAI+   
Sbjct: 225 KFDAIIFED 233



 Score = 40.9 bits (94), Expect = 0.069,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 10/81 (12%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           K  T          ++    +E C+ C +C+  C   AI  E   +            +D
Sbjct: 252 KCPTKVISGDITKKKKVTIDQELCVGCTVCKKQCKFDAIEGELKEKHK----------VD 301

Query: 100 MIKCIYCGLCQEACPVDAIVE 120
             KC+ C LC E CP  AI  
Sbjct: 302 ADKCVGCHLCMEKCPKKAIKI 322



 Score = 38.2 bits (87), Expect = 0.43,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 11/61 (18%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+    C+  C   AI+I  G              ID  KC+ CG C+E CP   I+  P
Sbjct: 140 CLGLGTCKDACKFDAISIVDGIAV-----------IDEEKCVNCGKCKEVCPKGIIITKP 188

Query: 123 N 123
            
Sbjct: 189 E 189


>gi|15669356|ref|NP_248161.1| formylmethanofuran dehydrogenase subunit FwdG [Methanocaldococcus
           jannaschii DSM 2661]
 gi|47115674|sp|Q58567|FWDG_METJA RecName: Full=Polyferredoxin protein fwdG
 gi|1591793|gb|AAB99169.1| formylmethanofuran dehydrogenase, subunit G (tungsten) (fwdG)
           [Methanocaldococcus jannaschii DSM 2661]
          Length = 82

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 7/68 (10%)

Query: 60  EERCIACKLCEAICPAQAITIE-SGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112
            ERC  C  C   CP  A   E  G +        +R +      ++   C  CG C EA
Sbjct: 10  PERCHGCGNCVVSCPVNAKHPETWGGKGPYSDDVVIRVENGVVTVVNQDLCGGCGACIEA 69

Query: 113 CPVDAIVE 120
           CPV+AI  
Sbjct: 70  CPVNAIEL 77


>gi|194334122|ref|YP_002015982.1| electron transport complex, RnfABCDGE type subunit C
           [Prosthecochloris aestuarii DSM 271]
 gi|194311940|gb|ACF46335.1| electron transport complex, RnfABCDGE type, C subunit
           [Prosthecochloris aestuarii DSM 271]
          Length = 441

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 27/89 (30%), Gaps = 3/89 (3%)

Query: 26  YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85
              KA  +++ P  K ++   F    AL +       CI C  C  +CP           
Sbjct: 331 MMGKAIFSLDVPVVKTTSGILFLNNTALEKSKE--RTCIRCGKCVDVCPQGLGPWLLA-N 387

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                         +  C  CG C   CP
Sbjct: 388 VAQMREFDDIQLYGLANCTECGSCTFVCP 416


>gi|326391445|ref|ZP_08212981.1| hydrogenase, Fe-only [Thermoanaerobacter ethanolicus JW 200]
 gi|325992524|gb|EGD50980.1| hydrogenase, Fe-only [Thermoanaerobacter ethanolicus JW 200]
          Length = 581

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK----CIYCGLCQEACP 114
              +C+ C+ C A+C +Q   + +    + G +  V            CI CG C + CP
Sbjct: 144 DPNKCVLCRRCVAVC-SQVQNVFAIGMVNRGFKTMVAPSFGRSLKDSPCISCGQCIQVCP 202

Query: 115 VDAIVEGP 122
           V AI E  
Sbjct: 203 VGAIYEKD 210


>gi|312135816|ref|YP_004003154.1| hypothetical protein Calow_1825 [Caldicellulosiruptor owensensis
           OL]
 gi|311775867|gb|ADQ05354.1| protein of unknown function DUF362 [Caldicellulosiruptor owensensis
           OL]
          Length = 375

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 11/66 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +  CI C  C   CPAQAI ++S               +D+ KCI C  C E CP  AI
Sbjct: 314 DKNICIGCAECFNTCPAQAIEMKSRKAY-----------VDLKKCIRCYCCHELCPAKAI 362

Query: 119 VEGPNF 124
               +F
Sbjct: 363 KIKRSF 368


>gi|311696980|gb|ADP99853.1| iron-sulfur cluster binding protein [marine bacterium HP15]
          Length = 483

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/123 (18%), Positives = 34/123 (27%), Gaps = 15/123 (12%)

Query: 29  KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE-RCIACKLCEAICPAQAIT--IESGPR 85
           +    ++ P E            A       +   CI C  C   CP          G  
Sbjct: 282 RKPDELDGPEEVHLVLLDNGRTGAFADAQMRQTLNCIRCGACMNHCPVYTRVGGHTYGEV 341

Query: 86  CHDGTRRTVRYDIDMIKCI--------YCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
                 + +   +  +  +         CG C E CPV      P  E     RQE   +
Sbjct: 342 YPGPIGKIITPHMAGLDKVPDHPSASSLCGACGEVCPVKI----PIPELLQRLRQENVKN 397

Query: 138 KER 140
            E+
Sbjct: 398 PEQ 400


>gi|302342224|ref|YP_003806753.1| methyl-viologen-reducing hydrogenase subunit delta [Desulfarculus
           baarsii DSM 2075]
 gi|301638837|gb|ADK84159.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfarculus
           baarsii DSM 2075]
          Length = 810

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 9/74 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E +CI C LC+ IC         G     G    +   +D + C   G C  ACP  A+
Sbjct: 486 DESKCIGCGLCKEICDCG------GIEPVQGRGGNIPRHVDPMLCTGGGTCAAACPYHAL 539

Query: 119 VEGPNFEFATETRQ 132
               N   +T  R+
Sbjct: 540 TLQNN---STAQRE 550



 Score = 33.9 bits (76), Expect = 6.8,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 14/32 (43%)

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
              +        +   +D  KCI CGLC+E C
Sbjct: 469 DKAKAGQLHAPRMVCVVDESKCIGCGLCKEIC 500


>gi|300854909|ref|YP_003779893.1| Fe-Fe hydrogenase 2 [Clostridium ljungdahlii DSM 13528]
 gi|300435024|gb|ADK14791.1| Fe-Fe hydrogenase 2 [Clostridium ljungdahlii DSM 13528]
          Length = 457

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/75 (26%), Positives = 28/75 (37%), Gaps = 10/75 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +E C  C+ C  ICP  AI  E G              I+  +C+ CG C + C   A 
Sbjct: 12  DKELCTGCRRCADICPVDAIEGEKGQPQ----------TINTERCVLCGQCVQICSAYAS 61

Query: 119 VEGPNFEFATETRQE 133
               +     E  +E
Sbjct: 62  AFDEDITPHKEKIKE 76



 Score = 33.9 bits (76), Expect = 7.8,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 12/21 (57%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   C  C  C + CPVDAI
Sbjct: 11  IDKELCTGCRRCADICPVDAI 31


>gi|282162750|ref|YP_003355135.1| hypothetical protein MCP_0080 [Methanocella paludicola SANAE]
 gi|282155064|dbj|BAI60152.1| conserved hypothetical protein [Methanocella paludicola SANAE]
          Length = 461

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 11/69 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI------YCGLCQEA 112
            + +C  C  C ++CP  A+          GT R  +      KCI       C +C+E 
Sbjct: 357 NKGKCERCGTCGSVCPTGAVISIPEANMKMGTARLDK-----NKCIAWAQNKKCLICEEV 411

Query: 113 CPVDAIVEG 121
           CPV AI   
Sbjct: 412 CPVKAIKST 420



 Score = 41.2 bits (95), Expect = 0.048,   Method: Composition-based stats.
 Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 14/61 (22%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            + CI C  C   CPA AI+ E+G               D   CI C  C+ ACP +AI 
Sbjct: 220 NDSCIKCMKCRRACPAGAISKENG--------------FDTTACIKCLKCERACPENAIS 265

Query: 120 E 120
            
Sbjct: 266 F 266



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 1/64 (1%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+ C+ C   C  Q I   +G         T   D +  KC  CG C   CP  A++  P
Sbjct: 322 CVRCESCVKACLGQVIRP-AGLDGGLERAFTPVLDFNKGKCERCGTCGSVCPTGAVISIP 380

Query: 123 NFEF 126
               
Sbjct: 381 EANM 384


>gi|255994378|ref|ZP_05427513.1| electron transport complex, B subunit [Eubacterium saphenum ATCC
           49989]
 gi|255993091|gb|EEU03180.1| electron transport complex, B subunit [Eubacterium saphenum ATCC
           49989]
          Length = 271

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/82 (26%), Positives = 29/82 (35%), Gaps = 11/82 (13%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P +K           A       +  CI CK C A C   AI +                
Sbjct: 181 PKKKLVFVGCSSTHKAPDAMKACKVACIGCKKCVAACKFDAIHVND-----------FLA 229

Query: 97  DIDMIKCIYCGLCQEACPVDAI 118
            +D  KC+ CG C +ACP  A+
Sbjct: 230 KVDYEKCVNCGACVKACPTKAL 251



 Score = 37.8 bits (86), Expect = 0.51,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 5/66 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK-----CIYCGLCQEAC 113
            E++C+AC  C   CP   I+     +       +     D +K     CI C  C  AC
Sbjct: 158 DEDKCVACGQCAKACPKHLISDAPKKKLVFVGCSSTHKAPDAMKACKVACIGCKKCVAAC 217

Query: 114 PVDAIV 119
             DAI 
Sbjct: 218 KFDAIH 223



 Score = 34.7 bits (78), Expect = 4.5,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 1/54 (1%)

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CE  C   A              +     ID  KC+ CG C +ACP   I + P
Sbjct: 129 CEFGCLGLA-DCVKACEFDAIHIKDGVAVIDEDKCVACGQCAKACPKHLISDAP 181


>gi|255010643|ref|ZP_05282769.1| putative ferredoxin [Bacteroides fragilis 3_1_12]
          Length = 278

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 19/64 (29%), Gaps = 12/64 (18%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
             +   E  C  C  C  +CP  AI                       +CI C  C + C
Sbjct: 202 TPWVEDESLCTHCGACAKMCPVSAIIKGDELNTD------------AERCIKCCACVKGC 249

Query: 114 PVDA 117
           P  A
Sbjct: 250 PQKA 253



 Score = 38.2 bits (87), Expect = 0.39,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
             +  D   C +CG C + CPV AI++G  
Sbjct: 202 TPWVEDESLCTHCGACAKMCPVSAIIKGDE 231


>gi|242041649|ref|XP_002468219.1| hypothetical protein SORBIDRAFT_01g042020 [Sorghum bicolor]
 gi|241922073|gb|EER95217.1| hypothetical protein SORBIDRAFT_01g042020 [Sorghum bicolor]
          Length = 604

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 24/56 (42%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           K C   C      +++G  C + T  +    I    CI CG+C + CP DAI    
Sbjct: 19  KKCRQECKKSCPVVKTGKLCIEVTSASKLAFISEELCIGCGICVKKCPFDAIEIIN 74


>gi|197286544|ref|YP_002152416.1| propanediol utilization dehydratase activating enzyme [Proteus
           mirabilis HI4320]
 gi|194684031|emb|CAR45337.1| putative propanediol utilization protein (putative dehydratase
           activating enzyme) [Proteus mirabilis HI4320]
          Length = 316

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 5/54 (9%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
            ++C+ C  C  +CPA    + +  +     R     D     CI C  C+E C
Sbjct: 57  RDKCVDCGKCVDVCPAGVHYMTTNEQGQQVHRVDRAVD-----CIGCRKCEEVC 105



 Score = 34.7 bits (78), Expect = 4.2,   Method: Composition-based stats.
 Identities = 9/48 (18%), Positives = 13/48 (27%)

Query: 76  QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                       +G     +      KC+ CG C + CP        N
Sbjct: 33  GCNIRCPWCSNPEGLSSEFQVMYSRDKCVDCGKCVDVCPAGVHYMTTN 80


>gi|194290510|ref|YP_002006417.1| 4fe-4S ferredoxin [Cupriavidus taiwanensis LMG 19424]
 gi|193224345|emb|CAQ70356.1| putative 4Fe-4S ferredoxin [Cupriavidus taiwanensis LMG 19424]
          Length = 721

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/100 (22%), Positives = 32/100 (32%), Gaps = 16/100 (16%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            L +  +   T   P +             +        +C  C  C   CP+QA+    
Sbjct: 557 ALDHLVRHAPT---PAQSVPLPAGAP----IGAIAVDTGKCTLCLACVGACPSQALRDNP 609

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                    R          C+ CGLCQ+ CP DA+   P
Sbjct: 610 ERPVLSFIERN---------CVQCGLCQKTCPEDAVTLVP 640



 Score = 40.9 bits (94), Expect = 0.054,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 7/61 (11%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           +G  +   C  C  IC  +AI                R ++    C+ CG C   CP  A
Sbjct: 335 HGRNQTTGCTACIDICSTEAI-------ASRWHDGKGRIEVAPNLCMGCGACTTVCPSGA 387

Query: 118 I 118
           I
Sbjct: 388 I 388



 Score = 38.2 bits (87), Expect = 0.42,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 14/30 (46%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           ID+  C  C  C +ACP  AI      + +
Sbjct: 215 IDLDLCTRCNACIDACPEGAIDFSYQIDLS 244


>gi|188995523|ref|YP_001929775.1| ferredoxin [Porphyromonas gingivalis ATCC 33277]
 gi|188595203|dbj|BAG34178.1| putative electron transport complex RnfABCDGE type B subunit
           [Porphyromonas gingivalis ATCC 33277]
          Length = 290

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 29/84 (34%), Gaps = 11/84 (13%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P  +         +            CI C LC   C  +AITIE+              
Sbjct: 193 PKSRRIFVSCVNKDKGGVAKKACSNACIGCSLCLKQCQFEAITIENNLSY---------- 242

Query: 97  DIDMIKCIYCGLCQEACPVDAIVE 120
            ID  KC  C  C E CP +AI E
Sbjct: 243 -IDHTKCRMCRKCVEVCPTNAIHE 265



 Score = 34.7 bits (78), Expect = 4.9,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 18/60 (30%), Gaps = 9/60 (15%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+    C   C   AI I                ++    C  CG C +ACP   I    
Sbjct: 140 CLGLGDCVDACGFDAIRINPTTLLP---------EVVEDACTACGACVKACPKSIIELRK 190


>gi|270308191|ref|YP_003330249.1| iron-sulfur cluster-binding protein, ferredoxin-like protein
           [Dehalococcoides sp. VS]
 gi|270154083|gb|ACZ61921.1| iron-sulfur cluster-binding protein, ferredoxin-like protein
           [Dehalococcoides sp. VS]
          Length = 136

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 9/63 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E RC  C  C  +CP  A +I+S  R      +         KCI CG+C ++CP  A+
Sbjct: 82  NENRCTHCGACVTMCPVDAFSIDSESREIKFDAK---------KCIVCGICIQSCPPRAM 132

Query: 119 VEG 121
              
Sbjct: 133 ELH 135


>gi|150005462|ref|YP_001300206.1| F420H2:quinone oxidoreductase [Bacteroides vulgatus ATCC 8482]
 gi|149933886|gb|ABR40584.1| F420H2:quinone oxidoreductase [Bacteroides vulgatus ATCC 8482]
          Length = 427

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 6/61 (9%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                 ++ C  C  C   CP Q I++             +   +D   CI CGLC++ C
Sbjct: 1   MIDITDKQSCCGCSSCVQKCPRQCISLHEDTEG------FLYPVVDKGDCIDCGLCEKVC 54

Query: 114 P 114
           P
Sbjct: 55  P 55


>gi|78043263|ref|YP_360108.1| iron-sulfur cluster-binding protein [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995378|gb|ABB14277.1| iron-sulfur cluster-binding protein [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 205

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 11/70 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               ++CI C+ C  +CP  AI IE+               I+   C  C  C++ CP  
Sbjct: 9   QIDYDKCIGCQTCAKVCPVLAIKIENKKPV-----------INAEMCRGCAACEQRCPQY 57

Query: 117 AIVEGPNFEF 126
           AI      E 
Sbjct: 58  AINMVKREEP 67


>gi|83310776|ref|YP_421040.1| pyruvate with ferredoxin oxidoreductase and related 2-oxoacid with
           ferredoxin oxidoreductase [Magnetospirillum magneticum
           AMB-1]
 gi|82945617|dbj|BAE50481.1| Pyruvate with ferredoxin oxidoreductase and related 2-oxoacid with
           ferredoxin oxidoreductase [Magnetospirillum magneticum
           AMB-1]
          Length = 89

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 11/67 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +RC+ C  C   CP Q +             +   +D +   C  CG+C E CP  AI
Sbjct: 33  DRDRCVKCATCWLYCPVQCVVE-----------KAAWFDFNYDYCKGCGICAEECPHRAI 81

Query: 119 VEGPNFE 125
                 E
Sbjct: 82  KMVEEAE 88


>gi|23013693|ref|ZP_00053560.1| COG2878: Predicted NADH:ubiquinone oxidoreductase, subunit RnfB
           [Magnetospirillum magnetotacticum MS-1]
          Length = 178

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 24/70 (34%), Gaps = 10/70 (14%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           R     E+ CI C  C   C + AI                 + +    C  CG C + C
Sbjct: 101 RVAFVNEDLCIGCLRCIGECGSDAIVGAPKQ----------LHTVIADACHACGKCFKIC 150

Query: 114 PVDAIVEGPN 123
           P +AI   P 
Sbjct: 151 PTEAIEMRPI 160


>gi|332298016|ref|YP_004439938.1| Soluble ligand binding domain protein [Treponema brennaborense DSM
           12168]
 gi|332181119|gb|AEE16807.1| Soluble ligand binding domain protein [Treponema brennaborense DSM
           12168]
          Length = 428

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/54 (24%), Positives = 17/54 (31%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
             C+ C  C ++C A             G +    Y      C  C LC   CP
Sbjct: 355 SECLRCGNCRSVCQAGIEPDTLYAYYAHGKKTDPAYVRTTSLCSDCALCNAVCP 408


>gi|302384752|ref|YP_003820574.1| ferredoxin [Clostridium saccharolyticum WM1]
 gi|302195380|gb|ADL02951.1| ferredoxin [Clostridium saccharolyticum WM1]
          Length = 56

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 11/58 (18%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           C++C  CEA CP  AI+               ++ ID   CI CG C+  CP  AI E
Sbjct: 9   CVSCGSCEAECPVSAISQGD-----------SQFVIDADTCIDCGACEGVCPTGAISE 55


>gi|298504657|gb|ADI83380.1| ferredoxin and NADH nitroreductase domain protein [Geobacter
           sulfurreducens KN400]
          Length = 274

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 7/69 (10%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI-VEG 121
           C  C  C ++CP + +         +G       +    +CI CG C+  CP  A+ V+ 
Sbjct: 11  CTRCGACVSVCPLRIV------ELPEGNLPPRFTEEGAGRCIICGHCEAVCPTAALAVDD 64

Query: 122 PNFEFATET 130
           P  + A  +
Sbjct: 65  PRLDPAVYS 73


>gi|288931561|ref|YP_003435621.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
 gi|288893809|gb|ADC65346.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
          Length = 358

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/84 (20%), Positives = 23/84 (27%), Gaps = 2/84 (2%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTR 91
           I  P      + +       + Y      CI C  C   C     A  +           
Sbjct: 157 IGVPDNTPKYTFKNLPVVEEKLYRWDWNYCINCTRCVRGCNEVRGAEALSFTVVNGGIVV 216

Query: 92  RTVRYDIDMIKCIYCGLCQEACPV 115
                D     C +CG+C E CP 
Sbjct: 217 GRTAEDEIKSGCKFCGVCVEICPT 240


>gi|257468261|ref|ZP_05632357.1| hypothetical protein FulcA4_02917 [Fusobacterium ulcerans ATCC
           49185]
 gi|317062541|ref|ZP_07927026.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Fusobacterium ulcerans ATCC 49185]
 gi|313688217|gb|EFS25052.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Fusobacterium ulcerans ATCC 49185]
          Length = 274

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/118 (21%), Positives = 36/118 (30%), Gaps = 28/118 (23%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +K +     R    L         C  CK+C + CP  +I  +   +          
Sbjct: 182 QPLDKENNPIDMRKVKPLT-----NNNCTDCKICVSACPLGSIEYDDVSKV--------- 227

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNG-DRWESEI 152
                  C+ CG C + CPV A              +   + K  L      R E EI
Sbjct: 228 ----TGICMKCGACIKKCPVHAKYYTD---------ESFLFHKHDLEEKFTRRAEPEI 272


>gi|257437596|ref|ZP_05613351.1| putative 4Fe-4S ferredoxin, iron-sulfur binding protein
           [Faecalibacterium prausnitzii A2-165]
 gi|257199903|gb|EEU98187.1| putative 4Fe-4S ferredoxin, iron-sulfur binding protein
           [Faecalibacterium prausnitzii A2-165]
          Length = 251

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 12/58 (20%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
              CI+C LC   CP  AI+ ++                   KCI C  C   CPV A
Sbjct: 177 NANCISCGLCARECPVGAISYDNFTVTD------------PSKCITCMRCVSRCPVHA 222



 Score = 35.5 bits (80), Expect = 2.4,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 11/22 (50%)

Query: 101 IKCIYCGLCQEACPVDAIVEGP 122
             CI CGLC   CPV AI    
Sbjct: 178 ANCISCGLCARECPVGAISYDN 199


>gi|256762397|ref|ZP_05502977.1| formate dehydrogenase [Enterococcus faecalis T3]
 gi|256683648|gb|EEU23343.1| formate dehydrogenase [Enterococcus faecalis T3]
          Length = 895

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 3/92 (3%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV 94
           F +G   P  + + +   +    E+CI C+ C  +C  +        +          + 
Sbjct: 122 FTEGKRMPCHQEDTSNPFFSYDPEKCIMCRRCARVCQLRQGRDVLSIANRGFETKMMPSY 181

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
               D   C  CG C  +CP  A+      E+
Sbjct: 182 GQAFDQSICESCGNCVSSCPTGALTAKDTKEY 213


>gi|255526394|ref|ZP_05393307.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           carboxidivorans P7]
 gi|296188391|ref|ZP_06856782.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
 gi|255509900|gb|EET86227.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           carboxidivorans P7]
 gi|296047012|gb|EFG86455.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
          Length = 265

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 13/83 (15%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
            +P F       +     + C  C +CE++C  Q I +E  P+                +
Sbjct: 175 VNPLFNKSAMNTKNFYANDNCTGCGICESVCNCQTIKVEGKPK-------------WGNE 221

Query: 103 CIYCGLCQEACPVDAIVEGPNFE 125
           C  C  C   CPV AI  G   E
Sbjct: 222 CSQCLACINLCPVKAIQYGKATE 244


>gi|198471457|ref|XP_001355634.2| GA15293 [Drosophila pseudoobscura pseudoobscura]
 gi|198145925|gb|EAL32693.2| GA15293 [Drosophila pseudoobscura pseudoobscura]
          Length = 1027

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/65 (21%), Positives = 18/65 (27%), Gaps = 8/65 (12%)

Query: 59   GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP-VDA 117
             ++ CI C  C   C                  +          C  C LC   CP +D 
Sbjct: 946  NDDMCINCGKCYMTCA-------DSGYQAIKFDKDTHLPHVNDDCTGCTLCVSVCPIIDC 998

Query: 118  IVEGP 122
            I   P
Sbjct: 999  ITMEP 1003


>gi|182417703|ref|ZP_02949022.1| pyruvate formate-lyase-activating enzyme [Clostridium butyricum
           5521]
 gi|237669148|ref|ZP_04529132.1| glycyl-radical enzyme activating family protein [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182378427|gb|EDT75958.1| pyruvate formate-lyase-activating enzyme [Clostridium butyricum
           5521]
 gi|237657496|gb|EEP55052.1| glycyl-radical enzyme activating family protein [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 310

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 12/62 (19%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + C AC  C+ IC   AI I+S            +Y ID  KCI CG C E C  +A+
Sbjct: 59  NIKNCTACGNCKEICSVHAIDIDS------------KYRIDRSKCINCGKCIEECYSEAL 106

Query: 119 VE 120
           V 
Sbjct: 107 VM 108


>gi|167377360|ref|XP_001734372.1| iron hydrogenase [Entamoeba dispar SAW760]
 gi|165904163|gb|EDR29489.1| iron hydrogenase, putative [Entamoeba dispar SAW760]
          Length = 468

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/89 (17%), Positives = 22/89 (24%), Gaps = 10/89 (11%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT------ 93
               S    G            +C+ C +C   C    +  +                  
Sbjct: 2   PPKPSHTVTGHDHNHSIQFDWSKCMGCGICATKCTFGVLVKQPPKIPPFIHPNRDKLSQE 61

Query: 94  ----VRYDIDMIKCIYCGLCQEACPVDAI 118
                R  ID  +C  CG C   C   AI
Sbjct: 62  NNDKTRVLIDESECTGCGQCSLVCNFGAI 90


>gi|159186286|ref|NP_355957.2| formate dehydrogenase alpha subunit [Agrobacterium tumefaciens str.
           C58]
 gi|159141420|gb|AAK88742.2| formate dehydrogenase alpha subunit [Agrobacterium tumefaciens str.
           C58]
          Length = 960

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 21/75 (28%), Gaps = 3/75 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T      G                   C+ CG C +
Sbjct: 171 YFTYDPSKCIVCSRCVRACEEVQGTFALTIEGRGFESRVSPGAHEAFLDSDCVSCGACVQ 230

Query: 112 ACPVDAIVEGPNFEF 126
           ACP   + E    E 
Sbjct: 231 ACPTATLTEKSVIEI 245


>gi|11499234|ref|NP_070472.1| tungsten formylmethanofuran dehydrogenase, subunit F (fwdF)
           [Archaeoglobus fulgidus DSM 4304]
 gi|2648906|gb|AAB89598.1| tungsten formylmethanofuran dehydrogenase, subunit F (fwdF)
           [Archaeoglobus fulgidus DSM 4304]
          Length = 438

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 1/74 (1%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            LR      + C  C +C   CP  AI +        G        ID +KC YCG+C  
Sbjct: 24  ELRELYYDYKWCNGCGICVYACPVNAIELGPVHDIAIGLDMPPVI-IDHLKCAYCGICYS 82

Query: 112 ACPVDAIVEGPNFE 125
            CP +A+    N E
Sbjct: 83  FCPFNALDFYINGE 96



 Score = 42.4 bits (98), Expect = 0.024,   Method: Composition-based stats.
 Identities = 22/59 (37%), Positives = 28/59 (47%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
            E  C  CKLCE +CP +AI +E          +     ID   C +C  C+E CP DA
Sbjct: 195 DETACDYCKLCEEVCPEEAIKVEGKRISFQLPEKIAEITIDQELCSHCSYCEEVCPYDA 253



 Score = 42.0 bits (97), Expect = 0.024,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 2/60 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++C  C +C   C      +       +         ID   C YC LC+E CP +AI
Sbjct: 157 DRDKCNLCGICAEFCEV--FKMVEKEPHPEDVMPYSDILIDETACDYCKLCEEVCPEEAI 214



 Score = 40.9 bits (94), Expect = 0.062,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 3/69 (4%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR---TVRYDIDMIKCIYCGLC 109
           +        +C  C +C + CP  A+         D +      V Y      C  C LC
Sbjct: 64  MPPVIIDHLKCAYCGICYSFCPFNALDFYINGERVDKSSLTLSPVMYTYKYETCRECTLC 123

Query: 110 QEACPVDAI 118
            + CP +AI
Sbjct: 124 YKVCPTNAI 132



 Score = 37.4 bits (85), Expect = 0.60,   Method: Composition-based stats.
 Identities = 13/25 (52%), Positives = 16/25 (64%)

Query: 103 CIYCGLCQEACPVDAIVEGPNFEFA 127
           C  CG+C  ACPV+AI  GP  + A
Sbjct: 35  CNGCGICVYACPVNAIELGPVHDIA 59



 Score = 37.4 bits (85), Expect = 0.62,   Method: Composition-based stats.
 Identities = 23/94 (24%), Positives = 31/94 (32%), Gaps = 8/94 (8%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P++   T     G+  L          + C  C  IC           R    ++   R
Sbjct: 249 CPYDAAKTIKPMEGKLELFEARMARCDPVGCAACIIICKHN--------RVWYVSKDKGR 300

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
              +   CIYCG C+ ACP D I       F  E
Sbjct: 301 VHFNEKFCIYCGACENACPYDLIKVTRKSYFTKE 334



 Score = 37.0 bits (84), Expect = 0.96,   Method: Composition-based stats.
 Identities = 21/67 (31%), Positives = 26/67 (38%), Gaps = 4/67 (5%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV----RYDIDMIKCIYCGLC 109
             Y    E C  C LC  +CP  AI  E          +      + +ID  KC  CG+C
Sbjct: 108 VMYTYKYETCRECTLCYKVCPTNAIKREVKITRQQIEEKNEGIEGKVEIDRDKCNLCGIC 167

Query: 110 QEACPVD 116
            E C V 
Sbjct: 168 AEFCEVF 174


>gi|327399377|ref|YP_004340246.1| cobyrinic acid ac-diamide synthase [Hippea maritima DSM 10411]
 gi|327182006|gb|AEA34187.1| Cobyrinic acid ac-diamide synthase [Hippea maritima DSM 10411]
          Length = 278

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 16/109 (14%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP-V 115
              E+ C  C  C  +C  +A+ +   P      ++T+ +D     C  CG C   CP  
Sbjct: 60  QINEDVCTFCGKCAEVCAYKALVVMGEP-----LKKTMFFD---ELCHSCGACAYVCPIE 111

Query: 116 DAIVEGP----NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDS 160
            A++E P           +  +       LL+ G    ++++  +  D 
Sbjct: 112 GALIEVPKRVGEIRTGKASHIDFVMG---LLDIGQASATQLIATLKRDY 157


>gi|319762960|ref|YP_004126897.1| electron transport complex, rnfabcdge type, b subunit
           [Alicycliphilus denitrificans BC]
 gi|330825040|ref|YP_004388343.1| RnfABCDGE type electron transport complex subunit B [Alicycliphilus
           denitrificans K601]
 gi|317117521|gb|ADV00010.1| electron transport complex, RnfABCDGE type, B subunit
           [Alicycliphilus denitrificans BC]
 gi|329310412|gb|AEB84827.1| electron transport complex, RnfABCDGE type, B subunit
           [Alicycliphilus denitrificans K601]
          Length = 227

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C LC   CP  AI          G  + +   I    C  C LC  ACPVD I
Sbjct: 93  DENWCIGCTLCIKACPTDAI---------LGLNKRMHTVIAP-HCTGCELCLPACPVDCI 142

Query: 119 VEGP 122
               
Sbjct: 143 RMEN 146



 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C LC +ACP DAI
Sbjct: 92  IDENWCIGCTLCIKACPTDAI 112


>gi|260171471|ref|ZP_05757883.1| putative hydrogenase 4Fe-4S binding subunit [Bacteroides sp. D2]
          Length = 266

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 12/77 (15%)

Query: 51  HALRRYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGT--------RRTVRYDI 98
              + +     +CI C  C A CP    ++ I   + P+              +  R   
Sbjct: 144 ERWKYWMEEMSKCIKCYACRAACPLCYCSRCIVEVNCPQWVQPWSAPLTNMEWQINRVMH 203

Query: 99  DMIKCIYCGLCQEACPV 115
              +CI CG C++ACPV
Sbjct: 204 MAGRCIGCGACKQACPV 220


>gi|253579943|ref|ZP_04857211.1| formate dehydrogenase [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848942|gb|EES76904.1| formate dehydrogenase [Ruminococcus sp. 5_1_39BFAA]
          Length = 902

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/88 (17%), Positives = 24/88 (27%), Gaps = 5/88 (5%)

Query: 54  RRYPNGEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
           + +      CI C  C   C       AI   +                +   C  CG C
Sbjct: 139 KFFTYDPSLCILCHRCVNTCKEIVGRGAIDTMNRGFQSVIGAHYKHKW-NEGICESCGNC 197

Query: 110 QEACPVDAIVEGPNFEFATETRQELYYD 137
            +ACP  A+      ++      +    
Sbjct: 198 VQACPTGALTMKRRKKYRPYQIDKKVLT 225


>gi|296109957|ref|YP_003616906.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus infernus ME]
 gi|295434771|gb|ADG13942.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus infernus ME]
          Length = 252

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 29/87 (33%), Gaps = 11/87 (12%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93
              P +           +        +E C+ C +C   CP   I    G          
Sbjct: 166 EQCPKKAVKVERELGNIYKEGHMEVDKELCVGCMVCVEECPIDCIYDIGG---------- 215

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVE 120
              +ID  KC+ C +C+E CP  AI  
Sbjct: 216 -VVEIDNDKCVLCRICEEVCPTKAIKM 241



 Score = 40.9 bits (94), Expect = 0.060,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 3/76 (3%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103
             +       + +    + CI C  CE  CP +A+ +E   R      +    ++D   C
Sbjct: 139 PTKAIKVVRKKSFSVNLDLCIGCGACEEQCPKKAVKVE---RELGNIYKEGHMEVDKELC 195

Query: 104 IYCGLCQEACPVDAIV 119
           + C +C E CP+D I 
Sbjct: 196 VGCMVCVEECPIDCIY 211



 Score = 40.5 bits (93), Expect = 0.081,   Method: Composition-based stats.
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 10/74 (13%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
              + +  L+ Y   +E+C  C +C  +CP +AI +           R   + +++  CI
Sbjct: 110 EVMKRKIRLKNYIFNDEKCGKCGICAMVCPTKAIKVV----------RKKSFSVNLDLCI 159

Query: 105 YCGLCQEACPVDAI 118
            CG C+E CP  A+
Sbjct: 160 GCGACEEQCPKKAV 173



 Score = 37.8 bits (86), Expect = 0.54,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 26/73 (35%), Gaps = 15/73 (20%)

Query: 61  ERCIACKLCEAICPAQAITIESG---------------PRCHDGTRRTVRYDIDMIKCIY 105
           + CI C++C   CP  AI +  G                       R   Y  +  KC  
Sbjct: 71  DNCIKCEICAKTCPVDAIFVIEGDVNIKDSKIVLSINKKEVMKRKIRLKNYIFNDEKCGK 130

Query: 106 CGLCQEACPVDAI 118
           CG+C   CP  AI
Sbjct: 131 CGICAMVCPTKAI 143



 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 26/115 (22%), Positives = 38/115 (33%), Gaps = 10/115 (8%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
            E          E   +     E  C  C LC   CP  AI      R            
Sbjct: 18  EELLKHIANHLSEIRGKLIYVNESICCKCNLCYKECPVDAIERAKVKRAVK--------- 68

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEI 152
                CI C +C + CPVDAI          +++  L  +K+ ++    R ++ I
Sbjct: 69  -IKDNCIKCEICAKTCPVDAIFVIEGDVNIKDSKIVLSINKKEVMKRKIRLKNYI 122


>gi|224371564|ref|YP_002605728.1| putative dissimilatory sulfite reductase [Desulfobacterium
           autotrophicum HRM2]
 gi|223694281|gb|ACN17564.1| putative dissimilatory sulfite reductase [Desulfobacterium
           autotrophicum HRM2]
          Length = 267

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 9/53 (16%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           CI C  C   C   AI +                +ID  +C+ C  C +ACP 
Sbjct: 151 CIGCGACVDACQEGAIALTGDGEQP---------EIDFDRCLMCAKCVKACPT 194



 Score = 35.1 bits (79), Expect = 3.1,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 1/56 (1%)

Query: 71  AICPAQAITIESGPRCH-DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
            +  AQ     S P+    G     R  +    CI CG C +AC   AI    + E
Sbjct: 118 RVAVAQCPNGCSQPQIKGIGIISAARPGVTEEACIGCGACVDACQEGAIALTGDGE 173


>gi|189460039|ref|ZP_03008824.1| hypothetical protein BACCOP_00675 [Bacteroides coprocola DSM 17136]
 gi|189433200|gb|EDV02185.1| hypothetical protein BACCOP_00675 [Bacteroides coprocola DSM 17136]
          Length = 445

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
             + CI C  C + CP              G    V +++ M  CI CG CQ  CP
Sbjct: 364 EPQPCIRCAKCVSACPMGLEPFLLATCSAHGDWERVEHEMIMS-CIECGSCQFTCP 418


>gi|297619955|ref|YP_003708060.1| Glutamate synthase (NADPH) [Methanococcus voltae A3]
 gi|297378932|gb|ADI37087.1| Glutamate synthase (NADPH) [Methanococcus voltae A3]
          Length = 510

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 25/81 (30%), Gaps = 14/81 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++CI C  C   C   AI                       +C  C  C   CP DAI
Sbjct: 15  DHDKCILCGRCAKECAWDAIRKSKDKIIT-----------YDNRCGSCFRCASMCPRDAI 63

Query: 119 VEGPNFEFATETRQELYYDKE 139
                 E  ++ R+   +  E
Sbjct: 64  TIV---ENPSQGRKHPVWTPE 81



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 18/37 (48%)

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           +  ID  KCI CG C + C  DAI +  +     + R
Sbjct: 11  KITIDHDKCILCGRCAKECAWDAIRKSKDKIITYDNR 47


>gi|21229366|ref|NP_635288.1| coenzyme F420 hydrogenase subunit beta [Methanosarcina mazei Go1]
 gi|20907953|gb|AAM32960.1| Coenzyme F420 hydrogenase beta subunit [Methanosarcina mazei Go1]
          Length = 296

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/89 (26%), Positives = 28/89 (31%), Gaps = 11/89 (12%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
                  P           G     +    EE C+ CK CE  C   AI +         
Sbjct: 138 KIAVTGCPAACVRPQDNDFGIMGTVKPEVLEENCVGCKRCEKACKMGAIKVIEDKAS--- 194

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                   ID  KCI CG C  AC  DA+
Sbjct: 195 --------IDTEKCILCGACIAACRKDAL 215


>gi|220931054|ref|YP_002507962.1| putative PAS/PAC sensor protein [Halothermothrix orenii H 168]
 gi|219992364|gb|ACL68967.1| putative PAS/PAC sensor protein [Halothermothrix orenii H 168]
          Length = 571

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 11/56 (19%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           +C  C  C   CP +AI I+ G              +D  +CI CG C EACP +A
Sbjct: 10  KCRDCYKCIRYCPVKAIGIKDGQA-----------WVDEDRCILCGRCIEACPQNA 54



 Score = 33.9 bits (76), Expect = 6.7,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 12/32 (37%)

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
             KC  C  C   CPV AI       +  E R
Sbjct: 8   EAKCRDCYKCIRYCPVKAIGIKDGQAWVDEDR 39


>gi|332800132|ref|YP_004461631.1| pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta
           [Tepidanaerobacter sp. Re1]
 gi|332697867|gb|AEE92324.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Tepidanaerobacter sp. Re1]
          Length = 122

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 24/69 (34%), Gaps = 10/69 (14%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
             EERCI C +C   CP  +I    G       +           C  CG+C   CP  A
Sbjct: 53  WDEERCIHCLICWRYCPDASIISTGGKFDSFDYKH----------CKGCGICANVCPTHA 102

Query: 118 IVEGPNFEF 126
           I      E 
Sbjct: 103 IEMISEDEI 111


>gi|323701257|ref|ZP_08112932.1| methyl-viologen-reducing hydrogenase delta subunit
           [Desulfotomaculum nigrificans DSM 574]
 gi|323533859|gb|EGB23723.1| methyl-viologen-reducing hydrogenase delta subunit
           [Desulfotomaculum nigrificans DSM 574]
          Length = 727

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/70 (25%), Positives = 22/70 (31%), Gaps = 10/70 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L       +RC  CK C   CP  AI  +                 +  +C  CG C  A
Sbjct: 511 LSYPEFALQRCTQCKRCTEECPFGAINEDEKGNPLP----------NPTRCRRCGTCMGA 560

Query: 113 CPVDAIVEGP 122
           CP   I    
Sbjct: 561 CPERIISFKN 570


>gi|302391759|ref|YP_003827579.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acetohalobium
           arabaticum DSM 5501]
 gi|302203836|gb|ADL12514.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acetohalobium
           arabaticum DSM 5501]
          Length = 252

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 22/69 (31%), Gaps = 4/69 (5%)

Query: 56  YPNGEERCIAC-KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
             +    C  C + C+      AI           T     + ID   CI CG C E CP
Sbjct: 119 DYDCVLYCGKCVRACKEEVGIGAINFVGR---GYETEVDTPFSIDSDVCIGCGACAEVCP 175

Query: 115 VDAIVEGPN 123
             AI     
Sbjct: 176 TGAIEVDDE 184


>gi|291548248|emb|CBL21356.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
           kD subunit (chain I) [Ruminococcus sp. SR1/5]
          Length = 56

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 11/58 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C++C  CE  CP +AI+                Y ID   C+ CG C EACPV AI
Sbjct: 7   DECVSCGTCEGECPNEAISQGDE-----------HYVIDADACVDCGTCAEACPVGAI 53


>gi|270296500|ref|ZP_06202700.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270273904|gb|EFA19766.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 498

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 3/89 (3%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C AC+LC ++CP Q +   S          +        +   C  C E CP DAI  
Sbjct: 348 QHCTACQLCVSVCPNQVLRPSSDLTKLMQPEMSYERGYCRPE---CAKCAEVCPTDAIHL 404

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWE 149
               E +        + KE  +   D+ E
Sbjct: 405 TSLAEKSAVQIGHAVWIKENCICITDKME 433



 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 6/63 (9%)

Query: 56  YPNGEERCIA----CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           +      CI     C  C   CPA AI +       + + +     ++  +CI CG C+ 
Sbjct: 420 WIKENCICITDKMECGNCARHCPAGAIQMVPSDPEDEASIKIPV--VNAERCIGCGACEN 477

Query: 112 ACP 114
            CP
Sbjct: 478 LCP 480



 Score = 39.3 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 4/61 (6%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRY----DIDMIKCIYCGLCQEACPVDAIVEG 121
           C  C  +CP  AI + S             +     I +   + CG C   CP  AI   
Sbjct: 390 CAKCAEVCPTDAIHLTSLAEKSAVQIGHAVWIKENCICITDKMECGNCARHCPAGAIQMV 449

Query: 122 P 122
           P
Sbjct: 450 P 450



 Score = 37.4 bits (85), Expect = 0.68,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 13/75 (17%)

Query: 47  FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
           F  +++L +     ++C +C LC   C A  I I++             ++ID  +C+ C
Sbjct: 208 FLSKYSLLKPVIDTKKCNSCGLCARNCKASCINIKA-------------HEIDYSRCVAC 254

Query: 107 GLCQEACPVDAIVEG 121
             C   C   AI   
Sbjct: 255 MDCINKCRKGAITYT 269


>gi|289578467|ref|YP_003477094.1| glutamate synthase (NADPH) [Thermoanaerobacter italicus Ab9]
 gi|289528180|gb|ADD02532.1| Glutamate synthase (NADPH) [Thermoanaerobacter italicus Ab9]
          Length = 501

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/106 (16%), Positives = 40/106 (37%), Gaps = 14/106 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++CI CK+C   C  +  + +             +   + + C+ C  C   CP  A+
Sbjct: 15  DYDKCINCKVCMRQCSFEVHSYDE---------HLDKMVSNDMNCVNCQRCVVLCPTQAL 65

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWES--EIVRNIVTDSPY 162
               +       R+   +  + + +   + E+   ++ ++  D PY
Sbjct: 66  TIIKH---PQTFREHANWTYDAIRDIYKQAETGGVLLSSMGNDRPY 108


>gi|322419467|ref|YP_004198690.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Geobacter sp. M18]
 gi|320125854|gb|ADW13414.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           M18]
          Length = 56

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 11/64 (17%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + CI C  C+  CP  AI+     R            I    CI CG C + CP
Sbjct: 1   MAHIISDECINCGACDDSCPVNAISEAGSKR-----------TIAADTCIDCGACVDTCP 49

Query: 115 VDAI 118
           V AI
Sbjct: 50  VSAI 53


>gi|258513528|ref|YP_003189750.1| hydrogenase, Fe-only [Desulfotomaculum acetoxidans DSM 771]
 gi|257777233|gb|ACV61127.1| hydrogenase, Fe-only [Desulfotomaculum acetoxidans DSM 771]
          Length = 573

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 3/68 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY---DIDMIKCIYCGLCQEACPV 115
              +CI C+ C ++C          P+               +    C+ CG C   CP 
Sbjct: 144 DPRKCILCRRCVSVCENIQKVTAIAPQERGFDTVIAPAFLASLSDSTCVNCGQCALVCPT 203

Query: 116 DAIVEGPN 123
            AIVE   
Sbjct: 204 AAIVEKNQ 211


>gi|258404218|ref|YP_003196960.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfohalobium retbaense DSM 5692]
 gi|257796445|gb|ACV67382.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfohalobium retbaense DSM 5692]
          Length = 144

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 13/58 (22%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           CI C  C   CP  AI ++                     CI+CG C E CP D +  
Sbjct: 86  CIQCGDCARACPVDAIYMDPETNAPVV-------------CIHCGRCVEFCPHDCLEM 130



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 17/47 (36%), Positives = 19/47 (40%)

Query: 77  AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           A   E+ P      R+          CI CG C  ACPVDAI   P 
Sbjct: 60  APCAEACPTGAMRQRKGGGVVYTKSLCIQCGDCARACPVDAIYMDPE 106


>gi|227485674|ref|ZP_03915990.1| iron-sulfur cluster-binding protein [Anaerococcus lactolyticus ATCC
           51172]
 gi|227236346|gb|EEI86361.1| iron-sulfur cluster-binding protein [Anaerococcus lactolyticus ATCC
           51172]
          Length = 287

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/92 (21%), Positives = 32/92 (34%), Gaps = 18/92 (19%)

Query: 27  FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC 86
           FF+       P            ++++ +    E++CI+C  C  +C       +S    
Sbjct: 200 FFRPFCKWICP---LGAFYSLFNKYSIYQLKLNEDKCISCGKCARVCKMDVDIRQSTTHL 256

Query: 87  HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                           CI CG C +ACP  AI
Sbjct: 257 E---------------CIRCGDCVKACPTKAI 273


>gi|225570606|ref|ZP_03779631.1| hypothetical protein CLOHYLEM_06708 [Clostridium hylemonae DSM
           15053]
 gi|225160619|gb|EEG73238.1| hypothetical protein CLOHYLEM_06708 [Clostridium hylemonae DSM
           15053]
          Length = 560

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/82 (20%), Positives = 24/82 (29%), Gaps = 3/82 (3%)

Query: 55  RYPNGEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRY-DIDMIKCIYCGLCQE 111
                  +CI C  C   C        ++   R            D+    C+ CG C+ 
Sbjct: 137 CIVRDPNKCILCGDCVRTCDEIQGLGVLDFAFRGARMQVMPAFNKDLAKTDCVGCGQCRA 196

Query: 112 ACPVDAIVEGPNFEFATETRQE 133
            CP  AI    N     E   +
Sbjct: 197 VCPTGAITIKQNIRPVWEAVAD 218


>gi|219850884|ref|YP_002465316.1| nitrite and sulphite reductase 4Fe-4S region [Methanosphaerula
           palustris E1-9c]
 gi|219545143|gb|ACL15593.1| nitrite and sulphite reductase 4Fe-4S region [Methanosphaerula
           palustris E1-9c]
          Length = 301

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 11/60 (18%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C  C  C   C  +AI I  G              +D  +C+ CG+C   CP + I   P
Sbjct: 166 CTGCGTCAHHCKEEAIRISGGKVV-----------LDQERCMLCGMCVSPCPFEIIKADP 214


>gi|167756713|ref|ZP_02428840.1| hypothetical protein CLORAM_02251 [Clostridium ramosum DSM 1402]
 gi|237732719|ref|ZP_04563200.1| pyruvate-flavodoxin oxidoreductase [Mollicutes bacterium D7]
 gi|167702888|gb|EDS17467.1| hypothetical protein CLORAM_02251 [Clostridium ramosum DSM 1402]
 gi|229384214|gb|EEO34305.1| pyruvate-flavodoxin oxidoreductase [Coprobacillus sp. D7]
          Length = 1172

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/125 (16%), Positives = 38/125 (30%), Gaps = 34/125 (27%)

Query: 57  PNGEERCIACKLCEAICPA---QAITIESGPRCHDGTRRTV---------------RYDI 98
              ++ CI C  C  +CP    +A  ++     +                      R  +
Sbjct: 684 RWNKDNCIQCNNCVMVCPHATIRAFLLDEEEMANLPENIGDDVLVPMGKDMGGLVYRIQV 743

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158
               C+ CGLC   CP              E   E+   K+ L++      + +   +  
Sbjct: 744 SPDNCVGCGLCVTECPGKK----------GEKALEMVSVKDELVH------APLADYMYA 787

Query: 159 DSPYR 163
           +  YR
Sbjct: 788 NVKYR 792


>gi|157364217|ref|YP_001470984.1| hypothetical protein Tlet_1363 [Thermotoga lettingae TMO]
 gi|157314821|gb|ABV33920.1| protein of unknown function DUF39 [Thermotoga lettingae TMO]
          Length = 443

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 11/59 (18%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
              +  C+ C  C ++CP  A+ +  G            +     KC  C  C +ACPV
Sbjct: 388 KEDKPECVDCGACVSLCPFDALLLVDGK-----------FTFLREKCTMCLQCSDACPV 435


>gi|150403300|ref|YP_001330594.1| putative ATPase RIL [Methanococcus maripaludis C7]
 gi|150034330|gb|ABR66443.1| ABC transporter related [Methanococcus maripaludis C7]
          Length = 590

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 23/73 (31%), Gaps = 1/73 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +RC   + C   C      +              +  I    C  CG+C + CP  AI
Sbjct: 8   DYDRCQP-RRCSMECMKYCPGVRMEEETIVMDENLGKPIISEELCSGCGICTKRCPFQAI 66

Query: 119 VEGPNFEFATETR 131
                 E  T+ R
Sbjct: 67  KIIGLPEELTDDR 79


>gi|220929711|ref|YP_002506620.1| hydrogenase, Fe-only [Clostridium cellulolyticum H10]
 gi|220000039|gb|ACL76640.1| hydrogenase, Fe-only [Clostridium cellulolyticum H10]
          Length = 562

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 7/92 (7%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRY 96
           EK        G   +R       +CI C  C   C        ++   R  +    T   
Sbjct: 125 EKKEIPIDDMGPSVIR----NPNKCILCGDCVRACQEIQGVGVLDFAYRGSNLQVTTAFN 180

Query: 97  D-IDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
             +  + C+ CG C+  CP  A++   + + A
Sbjct: 181 KSLQEVDCVNCGQCRVVCPTGALMIKKDIDRA 212


>gi|126698736|ref|YP_001087633.1| electron transport complex protein [Clostridium difficile 630]
 gi|115250173|emb|CAJ67994.1| Electron transport complex protein [Clostridium difficile]
          Length = 325

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 23/89 (25%), Gaps = 11/89 (12%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
               I  P  +         E            CI C +C   C   AI  E        
Sbjct: 183 KGIIITKPESQEVVVECNSKEFGKAVKEKCTAGCIGCGMCVKACKFDAIIFEDKIA---- 238

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                   ID  KC+ C  C   CP   I
Sbjct: 239 -------KIDPNKCVGCMQCVAKCPTKVI 260



 Score = 41.2 bits (95), Expect = 0.045,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 5/69 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-----DIDMIKCIYCGLCQEAC 113
            EE+C+ C  C+ +CP   I  +   +       +  +     +     CI CG+C +AC
Sbjct: 167 DEEKCVNCGKCKEVCPKGIIITKPESQEVVVECNSKEFGKAVKEKCTAGCIGCGMCVKAC 226

Query: 114 PVDAIVEGP 122
             DAI+   
Sbjct: 227 KFDAIIFED 235



 Score = 40.5 bits (93), Expect = 0.072,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 10/81 (12%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           K  T          ++    +E C+ C +C+  C   AI  E   +            +D
Sbjct: 254 KCPTKVISGDITKKKKVTIDQELCVGCTVCKKQCKFDAIEGELKEKHK----------VD 303

Query: 100 MIKCIYCGLCQEACPVDAIVE 120
             KC+ C LC E CP  AI  
Sbjct: 304 ADKCVGCHLCMEKCPKKAIKI 324



 Score = 38.2 bits (87), Expect = 0.44,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 11/61 (18%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+    C+  C   AI+I  G              ID  KC+ CG C+E CP   I+  P
Sbjct: 142 CLGLGTCKDACKFDAISIVDGIAV-----------IDEEKCVNCGKCKEVCPKGIIITKP 190

Query: 123 N 123
            
Sbjct: 191 E 191


>gi|332799825|ref|YP_004461324.1| hydrogenase, Fe-only [Tepidanaerobacter sp. Re1]
 gi|332697560|gb|AEE92017.1| hydrogenase, Fe-only [Tepidanaerobacter sp. Re1]
          Length = 584

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 7/93 (7%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRR 92
           I YP EK            +R       +CI C+ C + C   Q + + S       T  
Sbjct: 123 IRYPGEKSKAQYDDFSPSIVR----DTSKCILCRRCVSTCHKVQGVGVISPNYRGFNTVI 178

Query: 93  TVRYDIDMIK--CIYCGLCQEACPVDAIVEGPN 123
              YD+ + +  C+ CG C  ACPV A+ E  +
Sbjct: 179 APVYDMSLSEVSCVNCGQCIMACPVGALKEKDD 211


>gi|317484988|ref|ZP_07943871.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
 gi|316923726|gb|EFV44929.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia
           3_1_6]
          Length = 295

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 23/63 (36%), Gaps = 11/63 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ERC  C  C AIC  +AI   +            R  I    C  CG C   CP  A+
Sbjct: 63  DPERCTLCGACRAICRYKAIAQFA-----------SRLTIFTDMCHGCGGCFAVCPSQAL 111

Query: 119 VEG 121
             G
Sbjct: 112 TPG 114


>gi|310828225|ref|YP_003960582.1| RnfB [Eubacterium limosum KIST612]
 gi|308739959|gb|ADO37619.1| RnfB [Eubacterium limosum KIST612]
          Length = 347

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 11/62 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +  CIACK C  +CPA+AIT+E+               I+  KC  C  C E CP  AI
Sbjct: 213 CDIGCIACKACVKVCPAEAITVENNLAS-----------INYDKCTQCQACFEKCPTGAI 261

Query: 119 VE 120
             
Sbjct: 262 TL 263



 Score = 41.2 bits (95), Expect = 0.047,   Method: Composition-based stats.
 Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 5/70 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV-----RYDIDMIKCIYCGLCQEAC 113
             ++C AC  C   CP   I +  G +      R          +  I CI C  C + C
Sbjct: 168 DVDKCTACGKCRDACPKGIIDLIPGDQLVHVDCRNTDKGKLVRAVCDIGCIACKACVKVC 227

Query: 114 PVDAIVEGPN 123
           P +AI    N
Sbjct: 228 PAEAITVENN 237



 Score = 37.0 bits (84), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C+    C + C   A++I                 +D+ KC  CG C++ACP   I
Sbjct: 138 CRHGCMGLGTCVSACMFGALSIGDNGLPE----------VDVDKCTACGKCRDACPKGII 187

Query: 119 VEGP 122
              P
Sbjct: 188 DLIP 191


>gi|308163098|gb|EFO65459.1| Nitroreductase Fd-NR2 [Giardia lamblia P15]
          Length = 264

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 11/68 (16%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C  C +C  +CP   + ++   +      R          CI+CG C   CP  +I  
Sbjct: 11  DTCTGCNMCVEVCPTAVLKVDPETKVVAYANR--------DNCIFCGHCGAICPTGSISM 62

Query: 121 ---GPNFE 125
               P  E
Sbjct: 63  FGITPESE 70



 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 1/37 (2%)

Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATE-TRQELYY 136
             C  C +C E CP   +   P  +      R    +
Sbjct: 11  DTCTGCNMCVEVCPTAVLKVDPETKVVAYANRDNCIF 47


>gi|295094257|emb|CBK83348.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Coprococcus sp. ART55/1]
          Length = 597

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 11/58 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           E+CI CK C       AI ++ G              ID   C  CGLC + CPV AI
Sbjct: 545 EKCIQCKKCIREIGCPAIILKDGKVA-----------IDESLCTGCGLCSQICPVGAI 591


>gi|241768212|ref|ZP_04765649.1| electron transport complex, RnfABCDGE type, B subunit [Acidovorax
           delafieldii 2AN]
 gi|241360346|gb|EER57547.1| electron transport complex, RnfABCDGE type, B subunit [Acidovorax
           delafieldii 2AN]
          Length = 171

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/81 (25%), Positives = 26/81 (32%), Gaps = 10/81 (12%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
             +P    E         E  CI C LC   CP  AI   +           + + +   
Sbjct: 70  PLNPEHGVEAPRNVVYIDENWCIGCTLCIKACPTDAIVGANK----------LMHTVLES 119

Query: 102 KCIYCGLCQEACPVDAIVEGP 122
            C  C LC   CPVD I    
Sbjct: 120 HCTGCELCIPVCPVDCIQIEN 140


>gi|225572358|ref|ZP_03781222.1| hypothetical protein RUMHYD_00652 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040240|gb|EEG50486.1| hypothetical protein RUMHYD_00652 [Blautia hydrogenotrophica DSM
           10507]
          Length = 202

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 11/72 (15%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
            ++ +  +   P     C  C  C AICP +A+ +                     KCI 
Sbjct: 113 PYKPQMQMPATPICLPSCTRCGTCAAICPTEAVRVCED-----------FVQTKAEKCIL 161

Query: 106 CGLCQEACPVDA 117
           C  C  ACP +A
Sbjct: 162 CMACTAACPENA 173



 Score = 34.7 bits (78), Expect = 4.2,   Method: Composition-based stats.
 Identities = 10/37 (27%), Positives = 15/37 (40%)

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            G R +    +     I +  C  CG C   CP +A+
Sbjct: 109 PGNRPYKPQMQMPATPICLPSCTRCGTCAAICPTEAV 145


>gi|224371395|ref|YP_002605559.1| 4Fe-4S iron-sulfur binding protein (ferredoxin) [Desulfobacterium
           autotrophicum HRM2]
 gi|223694112|gb|ACN17395.1| 4Fe-4S iron-sulfur binding protein (ferredoxin) [Desulfobacterium
           autotrophicum HRM2]
          Length = 273

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/89 (23%), Positives = 29/89 (32%), Gaps = 15/89 (16%)

Query: 37  PFEKGSTSPRFRGEHA--LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
           P+ +        G     L+  P     CI CKLC  +CP  +I  +   +         
Sbjct: 174 PYREYYRPKDQNGNPVNILKVTPKTNSDCIDCKLCSEVCPMGSIDSDDVSKI-------- 225

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                   CI C  C + CPV A      
Sbjct: 226 -----TGICIKCCACVKKCPVGAKYFDDE 249


>gi|222150018|ref|YP_002550975.1| formate dehydrogenase, alpha subunit [Agrobacterium vitis S4]
 gi|221737000|gb|ACM37963.1| formate dehydrogenase, alpha subunit [Agrobacterium vitis S4]
          Length = 959

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRT--VRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C   Q     +      G+R +          +C+ CG C +
Sbjct: 170 YFTYDPSKCIVCSRCVRACEEVQGTFALTIEGRGFGSRVSPGAHEAFLESECVSCGACVQ 229

Query: 112 ACPVDAIVE 120
           ACP   + E
Sbjct: 230 ACPTATLTE 238


>gi|239815994|ref|YP_002944904.1| formate dehydrogenase, subunit alpha [Variovorax paradoxus S110]
 gi|239802571|gb|ACS19638.1| formate dehydrogenase, alpha subunit [Variovorax paradoxus S110]
          Length = 957

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 22/69 (31%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     SG                  +C+ CG C +
Sbjct: 160 YFTYDPSKCIVCNRCVRACEETQGTFALTISGRGFESRVSPGQDQPFMESECVSCGACVQ 219

Query: 112 ACPVDAIVE 120
           ACP   + E
Sbjct: 220 ACPTATLQE 228


>gi|254166869|ref|ZP_04873723.1| 4Fe-4S binding domain protein [Aciduliprofundum boonei T469]
 gi|289596256|ref|YP_003482952.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Aciduliprofundum boonei T469]
 gi|197624479|gb|EDY37040.1| 4Fe-4S binding domain protein [Aciduliprofundum boonei T469]
 gi|289534043|gb|ADD08390.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Aciduliprofundum boonei T469]
          Length = 62

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 23/66 (34%), Gaps = 11/66 (16%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +         C  C  C   CP   + ++                ID  KCI CG C  A
Sbjct: 1   MNMMNVDPAICNYCGACVGSCPVNCMFLDE-----------TIVRIDEDKCIKCGFCIRA 49

Query: 113 CPVDAI 118
           CPV AI
Sbjct: 50  CPVGAI 55


>gi|156846852|ref|XP_001646312.1| hypothetical protein Kpol_1032p48 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156116987|gb|EDO18454.1| hypothetical protein Kpol_1032p48 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 607

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 23/54 (42%)

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C   C      +++G  C +    +    I  I CI CG+C + CP DAI    
Sbjct: 21  CRQECKRSCPVVKTGKLCIEVAPNSKIAFISEILCIGCGICVKKCPFDAIQIIN 74


>gi|20093760|ref|NP_613607.1| coenzyme F420-reducing hydrogenase, beta subunit [Methanopyrus
           kandleri AV19]
 gi|19886667|gb|AAM01537.1| Coenzyme F420-reducing hydrogenase, beta subunit [Methanopyrus
           kandleri AV19]
          Length = 377

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 26/80 (32%), Gaps = 8/80 (10%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIES-------GPRCHDGTRRTVRYDIDMIKCI 104
            L       +RCI C+ C  +CP  A   E                          + C+
Sbjct: 279 WLTEAIEALDRCIKCRSCRQVCPVCASCEEGCWSFAGRESVTPTPVWHAHIAQCVALYCV 338

Query: 105 YCGLCQEACPVDAIVEGPNF 124
            CG C+ ACP + I     +
Sbjct: 339 ECGACETACPAE-IPLTRIY 357


>gi|332978350|gb|EGK15075.1| electron transport complex [Psychrobacter sp. 1501(2011)]
          Length = 275

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 20/60 (33%), Gaps = 10/60 (16%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + CI C  C   CP  AI                 + I    C  C LC   CPVD I  
Sbjct: 113 DDCIGCTKCIPACPVDAIVGTGK----------HMHTIISDLCTGCELCLPPCPVDCIDL 162



 Score = 37.0 bits (84), Expect = 0.78,   Method: Composition-based stats.
 Identities = 15/41 (36%), Positives = 17/41 (41%)

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           +     +      VR  I    CI C  C  ACPVDAIV  
Sbjct: 93  QWPVDPNTHRPTEVRAVIREDDCIGCTKCIPACPVDAIVGT 133


>gi|331091575|ref|ZP_08340411.1| pyruvate:ferredoxin oxidoreductase [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330403602|gb|EGG83158.1| pyruvate:ferredoxin oxidoreductase [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 1179

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/81 (19%), Positives = 18/81 (22%), Gaps = 15/81 (18%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93
           RG           E CI C  C  +CP                A                
Sbjct: 679 RGIAVDIPVWK-PENCIQCNRCAYVCPHAVIRPVALTEEEAANAPEGLETIDMIGMPGLK 737

Query: 94  VRYDIDMIKCIYCGLCQEACP 114
               +    C  CG C   CP
Sbjct: 738 FTMTVSAYDCTGCGSCANVCP 758


>gi|319638299|ref|ZP_07993062.1| iron-sulfur protein [Neisseria mucosa C102]
 gi|317400572|gb|EFV81230.1| iron-sulfur protein [Neisseria mucosa C102]
          Length = 484

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 18/65 (27%), Gaps = 10/65 (15%)

Query: 62  RCIACKLCEAICPA-----QAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQE 111
           +CI C  C   CP       A    + P                       C  CG C E
Sbjct: 317 QCIRCGACMNHCPVYTRIGGAAYGTTYPGPIGEIISPHLLGLDATRDLPTACTMCGACVE 376

Query: 112 ACPVD 116
            CPV 
Sbjct: 377 VCPVR 381


>gi|291521605|emb|CBK79898.1| PAS domain S-box [Coprococcus catus GD/7]
          Length = 581

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 11/63 (17%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C  C  C   C  +AI ++                I    C+ CG C E CP +A     
Sbjct: 11  CKHCYKCVRSCSVKAIKVKDAQA-----------TIMDDHCVLCGTCLEVCPQNAKTFVS 59

Query: 123 NFE 125
           + E
Sbjct: 60  DLE 62


>gi|297526113|ref|YP_003668137.1| Cobyrinic acid ac-diamide synthase [Staphylothermus hellenicus DSM
           12710]
 gi|297255029|gb|ADI31238.1| Cobyrinic acid ac-diamide synthase [Staphylothermus hellenicus DSM
           12710]
          Length = 295

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 10/65 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               ++C  C +C  IC   AI +                 I    C  C  C  ACP +
Sbjct: 66  FIDTKKCTKCGVCAKICDTGAILMPPN----------SFPVIFPRLCSGCKACYYACPYN 115

Query: 117 AIVEG 121
           AI++G
Sbjct: 116 AILKG 120



 Score = 37.8 bits (86), Expect = 0.51,   Method: Composition-based stats.
 Identities = 12/26 (46%), Positives = 15/26 (57%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPN 123
           ID  KC  CG+C + C   AI+  PN
Sbjct: 67  IDTKKCTKCGVCAKICDTGAILMPPN 92


>gi|237748067|ref|ZP_04578547.1| nitroreductase [Oxalobacter formigenes OXCC13]
 gi|229379429|gb|EEO29520.1| nitroreductase [Oxalobacter formigenes OXCC13]
          Length = 282

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 8/62 (12%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            E C  C+ C  +CPA  +  E                  +  CI CG C +ACP  ++ 
Sbjct: 12  HETCDTCRKCVQVCPAGILVQERKKEPIGVE--------HLENCIVCGHCADACPTGSLQ 63

Query: 120 EG 121
             
Sbjct: 64  HS 65


>gi|225573811|ref|ZP_03782566.1| hypothetical protein RUMHYD_02013 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038839|gb|EEG49085.1| hypothetical protein RUMHYD_02013 [Blautia hydrogenotrophica DSM
           10507]
          Length = 277

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/79 (29%), Positives = 29/79 (36%), Gaps = 11/79 (13%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100
             +  RFR           +   I C  CE  CP  AI +        G+  T    ID+
Sbjct: 23  WPSEERFRRGPVAISECVQQ---IPCNPCEKSCPVHAIHV--------GSPITNTPRIDL 71

Query: 101 IKCIYCGLCQEACPVDAIV 119
             C+ CG C   CP  AI 
Sbjct: 72  DLCVGCGNCVALCPGLAIF 90


>gi|253701409|ref|YP_003022598.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           M21]
 gi|251776259|gb|ACT18840.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           M21]
          Length = 1012

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 7/64 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  C++C  C   C   AI+    P       +  +  ++ I C   GLC   CP  AI
Sbjct: 941 NENNCVSCGACITACKYGAISFVDTP-------KGKKARVEPILCKGDGLCNAKCPTQAI 993

Query: 119 VEGP 122
               
Sbjct: 994 YLKH 997



 Score = 35.5 bits (80), Expect = 2.8,   Method: Composition-based stats.
 Identities = 29/157 (18%), Positives = 49/157 (31%), Gaps = 39/157 (24%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITI-------ESGPRCHDGTRRTVRYDI 98
            F+     +     EE+C  C +C   CP +                 +      +   +
Sbjct: 94  DFKVTLTKKPRYISEEKCTGCNICVDYCPVKIPDPFNQNLSENKAVHIYFSQAVPLVTYV 153

Query: 99  DMIKCIY-----CGLCQEACPVDAIVEGPNFE--------------FATET---RQELYY 136
           D   C+Y     C +C  AC  +AI      E              ++T     R +  Y
Sbjct: 154 DPETCLYLKEGKCQICVGACKTNAIDLHQKPETFQVEVGAIILSPGYSTFDPKLRNDFGY 213

Query: 137 DK----------ERLLNNGDRWESEIVRNIVTDSPYR 163
            K          ER+L     +E E++R      P++
Sbjct: 214 GKMQNVVTSLDFERILCATGPYEGEVLRPSDKKHPHK 250


>gi|170755623|ref|YP_001781808.1| iron-sulfur cluster-binding protein [Clostridium botulinum B1 str.
           Okra]
 gi|169120835|gb|ACA44671.1| iron-sulfur cluster-binding protein [Clostridium botulinum B1 str.
           Okra]
          Length = 273

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 53/153 (34%), Gaps = 31/153 (20%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRY--PN 58
           M I R     ++ K         ++  F    T   P+ K       +G+    R   P 
Sbjct: 145 MDIVRILADEIYTKIISEKI---IKTVFVKGNT---PYRKYYMPKDEKGQPIDIRKVKPK 198

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI CKLC  +CP  +I  E   + +               CI C  C + CPV A 
Sbjct: 199 TNNNCINCKLCANLCPIGSIDFEDVTKLN-------------EICIKCCACIKKCPVGA- 244

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
                F+ +      L + KE  L N  R+  E
Sbjct: 245 ---KYFDDSGY----LKHKKE--LENNFRYRKE 268


>gi|154492142|ref|ZP_02031768.1| hypothetical protein PARMER_01774 [Parabacteroides merdae ATCC
           43184]
 gi|154087367|gb|EDN86412.1| hypothetical protein PARMER_01774 [Parabacteroides merdae ATCC
           43184]
          Length = 458

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 11/61 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +RC+ C  C   CP  AI I  G                   C+ CG C +ACP +AI
Sbjct: 13  DNDRCVGCTHCMTKCPTGAIRIREGKASIRKGW-----------CVDCGECLKACPTEAI 61

Query: 119 V 119
            
Sbjct: 62  Y 62


>gi|5734562|emb|CAB52788.1| polyferredoxin [Methanothermobacter thermautotrophicus]
          Length = 447

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++CI C+ C   CPA AI   +  +       T+   ID   CI CGLC E CP DAI
Sbjct: 351 DTDKCILCEKCGIHCPADAIPKTTMKKRRITGGFTL---IDPRLCIGCGLCLEICPEDAI 407



 Score = 41.6 bits (96), Expect = 0.039,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 10/95 (10%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93
           I+ P +    +   +              CI C LC  ICP  AI+ +            
Sbjct: 363 IHCPADAIPKTTMKKRRITGGFTLIDPRLCIGCGLCLEICPEDAISKDESG--------- 413

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
               +D  KCI+CG C   CP  A++    F  + 
Sbjct: 414 -LMMVDEDKCIHCGACSNICPARAVLFEREFGLSD 447



 Score = 37.8 bits (86), Expect = 0.56,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY---------DIDMIKCIYCGLC 109
             E+C  C+ C+  CP  AI +++        R              +ID  KC  C  C
Sbjct: 147 DPEKCTLCRRCQYYCPTGAIIVDTDEGVCTECRVCEDVCPVGAIEDLEIDPEKCTLCLKC 206

Query: 110 QEACPVDAIVEGPNFE 125
              CP  AI    +FE
Sbjct: 207 LRECPSRAIY-VDDFE 221



 Score = 37.4 bits (85), Expect = 0.76,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 10/72 (13%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            A+R        CI C  C   CP +AI             R   Y +D  KC  CG+C+
Sbjct: 21  EAIRMIDGRAFSCITCGACMEACPNKAIRRN----------RYGGYVVDRAKCNACGVCE 70

Query: 111 EACPVDAIVEGP 122
             CPV++I    
Sbjct: 71  MTCPVNSIRIED 82



 Score = 37.0 bits (84), Expect = 0.89,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 11/74 (14%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R    +R   +  E CI+C +C  ICP  AIT+           +    ++D  KCI C 
Sbjct: 311 RDFKTVRWDGSVSEDCISCGVCSEICPVDAITL-----------KRGSIEVDTDKCILCE 359

Query: 108 LCQEACPVDAIVEG 121
            C   CP DAI + 
Sbjct: 360 KCGIHCPADAIPKT 373



 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 20/67 (29%), Gaps = 9/67 (13%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                    C++C  C   C                 +           CI CG+C E C
Sbjct: 286 MVDGELRGYCVSCGRCVRACDV---------SRARDFKTVRWDGSVSEDCISCGVCSEIC 336

Query: 114 PVDAIVE 120
           PVDAI  
Sbjct: 337 PVDAITL 343


>gi|77920096|ref|YP_357911.1| iron-containing hydrogenase, Hyd gamma [Pelobacter carbinolicus DSM
           2380]
 gi|77546179|gb|ABA89741.1| iron-containing hydrogenase, Hyd gamma [Pelobacter carbinolicus DSM
           2380]
          Length = 598

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 3/70 (4%)

Query: 59  GEERCIACKLCEAICPAQAIT---IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
              +CI C  C  IC     T     +               ++   C+ CG C   CPV
Sbjct: 147 DMTKCIRCGRCVTICREVQGTDVLFYANKGVDSEIGVRDSDLLNTSDCVSCGQCTLVCPV 206

Query: 116 DAIVEGPNFE 125
            A+ E  + E
Sbjct: 207 GALAERDDTE 216


>gi|39995201|ref|NP_951152.1| heterodisulfide reductase subunit [Geobacter sulfurreducens PCA]
 gi|39981963|gb|AAR33425.1| heterodisulfide reductase subunit [Geobacter sulfurreducens PCA]
 gi|298504205|gb|ADI82928.1| heterodisulfide reductase, subunit A [Geobacter sulfurreducens
           KN400]
          Length = 665

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 1/56 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            E RC+AC  C+ ICP  A+  E   R   G    V   ++   C  CG CQ  CP
Sbjct: 590 DERRCVACLYCKKICPYGAVE-EKEIRDRQGNLIRVVAYVNPGVCGGCGTCQATCP 644



 Score = 33.5 bits (75), Expect = 8.7,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 23/68 (33%), Gaps = 13/68 (19%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY--------DIDMIKCIY----- 105
            E +C  C +C A CP + I               V +         ID   C Y     
Sbjct: 239 DESKCTGCGVCMAKCPQKKIPNSFDKNLGMRPAIYVPFPQAVPNTPVIDRENCTYFKSGK 298

Query: 106 CGLCQEAC 113
           CG+C + C
Sbjct: 299 CGVCAKVC 306


>gi|15966762|ref|NP_387115.1| NAD-dependent formate dehydrogenase alpha subunit protein
           [Sinorhizobium meliloti 1021]
 gi|307301589|ref|ZP_07581348.1| formate dehydrogenase, alpha subunit [Sinorhizobium meliloti
           BL225C]
 gi|307316387|ref|ZP_07595831.1| formate dehydrogenase, alpha subunit [Sinorhizobium meliloti AK83]
 gi|15076034|emb|CAC47588.1| Probable NAD-dependent formate dehydrogenase alpha subunit
           [Sinorhizobium meliloti 1021]
 gi|306898227|gb|EFN28969.1| formate dehydrogenase, alpha subunit [Sinorhizobium meliloti AK83]
 gi|306903287|gb|EFN33876.1| formate dehydrogenase, alpha subunit [Sinorhizobium meliloti
           BL225C]
          Length = 959

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 25/75 (33%), Gaps = 3/75 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     SG          +  D    +C+ CG C +
Sbjct: 170 YFTYDPAKCIVCSRCVRACEEVQGTFALTISGRGFDSRVSAGMNEDFVSSECVSCGACVQ 229

Query: 112 ACPVDAIVEGPNFEF 126
           ACP   + E    E 
Sbjct: 230 ACPTATLTEKSVIEI 244


>gi|325960237|ref|YP_004291703.1| NADH dehydrogenase (quinone) [Methanobacterium sp. AL-21]
 gi|325331669|gb|ADZ10731.1| NADH dehydrogenase (quinone) [Methanobacterium sp. AL-21]
          Length = 619

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 10/63 (15%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             L  Y   +E+C  C LC   CP  A++            +   + ID  KCI CG C 
Sbjct: 554 KELINYTVVDEKCEGCMLCLKSCPVGAVSGT----------KKHIHSIDTEKCIKCGTCI 603

Query: 111 EAC 113
           E C
Sbjct: 604 ELC 606



 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 19/55 (34%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
           +         IE         +  + Y +   KC  C LC ++CPV A+      
Sbjct: 533 KYFEDEYISHIEDKRCKALLCKELINYTVVDEKCEGCMLCLKSCPVGAVSGTKKH 587


>gi|320352768|ref|YP_004194107.1| nitroreductase [Desulfobulbus propionicus DSM 2032]
 gi|320121270|gb|ADW16816.1| nitroreductase [Desulfobulbus propionicus DSM 2032]
          Length = 276

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 21/64 (32%), Gaps = 8/64 (12%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            +    + CI C  C   CP   I +  G    +  R           CI C  C   CP
Sbjct: 4   HFTIDRDLCIQCGACADDCPFHIIDLTDGYPALNPAREH--------HCIQCQHCLAVCP 55

Query: 115 VDAI 118
             A+
Sbjct: 56  TAAL 59



 Score = 40.9 bits (94), Expect = 0.063,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 13/30 (43%)

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
            + ID   CI CG C + CP   I     +
Sbjct: 4   HFTIDRDLCIQCGACADDCPFHIIDLTDGY 33


>gi|307266694|ref|ZP_07548222.1| hydrogenase, Fe-only [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918296|gb|EFN48542.1| hydrogenase, Fe-only [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 581

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK----CIYCGLCQEACP 114
              +C+ C+ C A+C +Q   + +    + G +  V            CI CG C + CP
Sbjct: 144 DPNKCVLCRRCVAVC-SQVQNVFAIGMVNRGFKTMVAPSFGRSLKDSPCISCGQCIQVCP 202

Query: 115 VDAIVEGP 122
           V AI E  
Sbjct: 203 VGAIYEKD 210


>gi|304315374|ref|YP_003850521.1| energy-converting hydrogenase B, subunit K [Methanothermobacter
           marburgensis str. Marburg]
 gi|302588833|gb|ADL59208.1| energy-converting hydrogenase B, subunit K [Methanothermobacter
           marburgensis str. Marburg]
          Length = 447

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 3/60 (5%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++CI C+ C   CPA AI   +  +       T+   ID   CI CGLC E CP DAI
Sbjct: 351 DTDKCILCEKCGIHCPADAIPKTTMKKRRITGGFTL---IDPRLCIGCGLCLEICPEDAI 407



 Score = 41.6 bits (96), Expect = 0.039,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 10/95 (10%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93
           I+ P +    +   +              CI C LC  ICP  AI+ +            
Sbjct: 363 IHCPADAIPKTTMKKRRITGGFTLIDPRLCIGCGLCLEICPEDAISKDESG--------- 413

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128
               +D  KCI+CG C   CP  A++    F  + 
Sbjct: 414 -LMMVDEDKCIHCGACSNICPARAVLFEREFGLSD 447



 Score = 37.8 bits (86), Expect = 0.55,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY---------DIDMIKCIYCGLC 109
             E+C  C+ C+  CP  AI +++        R              +ID  KC  C  C
Sbjct: 147 DPEKCTLCRRCQYYCPTGAIIVDTDEGVCTECRVCEDVCPVGAIEDLEIDPEKCTLCLKC 206

Query: 110 QEACPVDAIVEGPNFE 125
              CP  AI    +FE
Sbjct: 207 LRECPSRAIY-VDDFE 221



 Score = 37.4 bits (85), Expect = 0.76,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 10/72 (13%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            A+R        CI C  C   CP +AI             R   Y +D  KC  CG+C+
Sbjct: 21  EAIRMIDGRAFSCITCGACMEACPNKAIRRN----------RYGGYVVDRAKCNACGVCE 70

Query: 111 EACPVDAIVEGP 122
             CPV++I    
Sbjct: 71  MTCPVNSIRIED 82



 Score = 37.0 bits (84), Expect = 0.88,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 11/74 (14%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R    +R   +  E CI+C +C  ICP  AIT+           +    ++D  KCI C 
Sbjct: 311 RDFKTVRWDGSVSEDCISCGVCSEICPVDAITL-----------KRGSIEVDTDKCILCE 359

Query: 108 LCQEACPVDAIVEG 121
            C   CP DAI + 
Sbjct: 360 KCGIHCPADAIPKT 373



 Score = 35.8 bits (81), Expect = 2.1,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 20/67 (29%), Gaps = 9/67 (13%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                    C++C  C   C                 +           CI CG+C E C
Sbjct: 286 MVDGELRGYCVSCGRCVRACDV---------SRARDFKTVRWDGSVSEDCISCGVCSEIC 336

Query: 114 PVDAIVE 120
           PVDAI  
Sbjct: 337 PVDAITL 343


>gi|262383251|ref|ZP_06076387.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|301309306|ref|ZP_07215248.1| putative 4Fe-4S binding domain protein [Bacteroides sp. 20_3]
 gi|262294149|gb|EEY82081.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
 gi|300832395|gb|EFK63023.1| putative 4Fe-4S binding domain protein [Bacteroides sp. 20_3]
          Length = 262

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 11/87 (12%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
             KG+   R +G    +      + C  C+ C  +CP  AI++       D         
Sbjct: 169 EVKGNFPYRVKGPSTPQAPVTDNDLCTQCEYCVDVCPTHAISLADEGMYSD--------- 219

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNF 124
                CI C  C + CP  A      +
Sbjct: 220 --PNLCIKCCACVKECPEGARTFDTPY 244



 Score = 35.5 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 7/30 (23%), Positives = 10/30 (33%)

Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATET 130
             C  C  C + CP  AI       ++   
Sbjct: 192 DLCTQCEYCVDVCPTHAISLADEGMYSDPN 221


>gi|256841600|ref|ZP_05547107.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256737443|gb|EEU50770.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 262

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 11/87 (12%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
             KG+   R +G    +      + C  C+ C  +CP  AI++       D         
Sbjct: 169 EVKGNFPYRVKGPSTPQAPVTDNDLCTQCEYCVDVCPTHAISLADEGMYSD--------- 219

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNF 124
                CI C  C + CP  A      +
Sbjct: 220 --PNLCIKCCACVKECPEGARTFDTPY 244



 Score = 35.5 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 7/30 (23%), Positives = 10/30 (33%)

Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATET 130
             C  C  C + CP  AI       ++   
Sbjct: 192 DLCTQCEYCVDVCPTHAISLADEGMYSDPN 221


>gi|237653625|ref|YP_002889939.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Thauera sp. MZ1T]
 gi|237624872|gb|ACR01562.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Thauera sp. MZ1T]
          Length = 100

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 11/83 (13%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100
              SP   G+    R     ++C+ C +C   CP Q +   +             +D DM
Sbjct: 27  TEQSPMLPGDWRSFRPVVDRDKCVKCAVCWLYCPVQCVEEHAA-----------WFDFDM 75

Query: 101 IKCIYCGLCQEACPVDAIVEGPN 123
             C  CG+C   CP  AI   P 
Sbjct: 76  KTCKGCGICAHECPQRAITMIPE 98


>gi|254283952|ref|ZP_04958920.1| serine/threonine protein kinase [gamma proteobacterium NOR51-B]
 gi|219680155|gb|EED36504.1| serine/threonine protein kinase [gamma proteobacterium NOR51-B]
          Length = 510

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 1/54 (1%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           + CI C +C   CPA+ +  +                 ++  CI CG C   CP
Sbjct: 369 QPCIRCGMCAEACPAE-LLPQQLYWFARAKDNDSLEQHNLFDCIECGACSWVCP 421


>gi|167761220|ref|ZP_02433347.1| hypothetical protein CLOSCI_03625 [Clostridium scindens ATCC 35704]
 gi|167660886|gb|EDS05016.1| hypothetical protein CLOSCI_03625 [Clostridium scindens ATCC 35704]
          Length = 468

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 11/59 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
            E+ CI C  C   CP QAI + +G              I    C+ CG C   CP  A
Sbjct: 22  DEDACIGCINCIKYCPTQAIRVHNGKA-----------KITPEFCVDCGRCLRYCPHHA 69


>gi|153939302|ref|YP_001391031.1| sulfite/nitrite reductase family protein [Clostridium botulinum F
           str. Langeland]
 gi|152935198|gb|ABS40696.1| sulfite/nitrite reductase family protein [Clostridium botulinum F
           str. Langeland]
 gi|295319087|gb|ADF99464.1| sulfite/nitrite reductase family protein [Clostridium botulinum F
           str. 230613]
          Length = 284

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 34/109 (31%), Gaps = 20/109 (18%)

Query: 12  FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71
           F  E    F + L         +  P      S    G          EE+C  C +C  
Sbjct: 126 FGYELPSKFKITL---------VGCPNNCAKASINDIGIMGQAYVEFDEEKCKTCGICTK 176

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            C  +A+T+E+                    C+ CG C   CP +A+  
Sbjct: 177 SCRQKAVTVENKKIV-----------YKKDLCVNCGKCATVCPFEAMTI 214


>gi|154414518|ref|XP_001580286.1| Iron only hydrogenase large subunit, C-terminal domain containing
           protein [Trichomonas vaginalis G3]
 gi|121914502|gb|EAY19300.1| Iron only hydrogenase large subunit, C-terminal domain containing
           protein [Trichomonas vaginalis G3]
          Length = 559

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 21/87 (24%), Gaps = 15/87 (17%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91
                P +     P+               +CI C LC   C                  
Sbjct: 105 WNYYQPKQGLPYPPQQNDSI-----QWDNTKCINCHLCIRACT----------NVQQIDS 149

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAI 118
                      CI CG C   CPV A+
Sbjct: 150 IDSVTHAIDDSCIRCGHCLTVCPVAAL 176


>gi|323704227|ref|ZP_08115806.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacterium xylanolyticum LX-11]
 gi|323536293|gb|EGB26065.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermoanaerobacterium xylanolyticum LX-11]
          Length = 56

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 11/64 (17%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + CI+C  C A CP  AI   +G            Y++D   CI CG C+  CP
Sbjct: 1   MAHIITDECISCGACAAECPVDAIHEGTGK-----------YEVDADTCIDCGACEPVCP 49

Query: 115 VDAI 118
             AI
Sbjct: 50  TGAI 53



 Score = 33.5 bits (75), Expect = 9.1,   Method: Composition-based stats.
 Identities = 14/25 (56%), Positives = 15/25 (60%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEG 121
            I   +CI CG C   CPVDAI EG
Sbjct: 3   HIITDECISCGACAAECPVDAIHEG 27


>gi|312126857|ref|YP_003991731.1| hypothetical protein Calhy_0621 [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311776876|gb|ADQ06362.1| protein of unknown function DUF362 [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 375

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 11/65 (16%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
              CI C  C   CPAQAI ++S               +D+ KCI C  C E CP  AI 
Sbjct: 315 RNICIGCAECFNACPAQAIEMKSRKAY-----------VDLKKCIRCYCCHELCPAKAIK 363

Query: 120 EGPNF 124
              +F
Sbjct: 364 IKRSF 368


>gi|310780235|ref|YP_003968567.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ilyobacter
           polytropus DSM 2926]
 gi|309749558|gb|ADO84219.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ilyobacter
           polytropus DSM 2926]
          Length = 59

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 10/65 (15%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
             Y   +  CIAC  CE +CP   I+     +            ID   CI CG C   C
Sbjct: 1   MAYRINQSECIACGACEPVCPVSCISEVVDGKRE----------IDESACIDCGACAGVC 50

Query: 114 PVDAI 118
           PV+ I
Sbjct: 51  PVECI 55


>gi|302335790|ref|YP_003800997.1| NADH ubiquinone oxidoreductase, F subunit, iron sulfur binding
           protein [Olsenella uli DSM 7084]
 gi|301319630|gb|ADK68117.1| NADH ubiquinone oxidoreductase, F subunit, iron sulfur binding
           protein [Olsenella uli DSM 7084]
          Length = 355

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 26/70 (37%), Gaps = 10/70 (14%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
            A   Y     RC  C  C A C   AIT +              + ID   CI CG C 
Sbjct: 278 KAFMTYHILVSRCTGCGDCLAACEEDAITGKDK----------FVHVIDQKACIQCGRCL 327

Query: 111 EACPVDAIVE 120
           EAC   A+V 
Sbjct: 328 EACGEGAVVM 337



 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 16/40 (40%)

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
                 +  + Y I + +C  CG C  AC  DAI     F
Sbjct: 272 CPAGECKAFMTYHILVSRCTGCGDCLAACEEDAITGKDKF 311


>gi|300853352|ref|YP_003778336.1| ferredoxin [Clostridium ljungdahlii DSM 13528]
 gi|300433467|gb|ADK13234.1| ferredoxin [Clostridium ljungdahlii DSM 13528]
          Length = 57

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 11/63 (17%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 E C++C  C + CPA AI+               ++ ID  KCI CG C   CP
Sbjct: 1   MAYKITEDCVSCGSCASECPADAISQGD-----------SQFVIDPEKCIECGNCANVCP 49

Query: 115 VDA 117
           V A
Sbjct: 50  VGA 52


>gi|322436219|ref|YP_004218431.1| iron-sulfur cluster-binding protein [Acidobacterium sp. MP5ACTX9]
 gi|321163946|gb|ADW69651.1| iron-sulfur cluster-binding protein [Acidobacterium sp. MP5ACTX9]
          Length = 86

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%)

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           C   CP   I      +  +G     +  ID ++CI CG C   CPV AI  G +
Sbjct: 17  CVDACPVDCIHP---KKDENGYSDATQLFIDPVECIDCGACVPVCPVSAIYAGDD 68


>gi|326201014|ref|ZP_08190886.1| protein of unknown function DUF362 [Clostridium papyrosolvens DSM
           2782]
 gi|325988582|gb|EGD49406.1| protein of unknown function DUF362 [Clostridium papyrosolvens DSM
           2782]
          Length = 349

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 12/66 (18%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           R Y   +  CI C  C   CP  AIT+++ P                 KC  C  C E C
Sbjct: 293 RTYKVDDSLCIRCGACVDACPFHAITLKTIPEFDR------------DKCALCTCCMELC 340

Query: 114 PVDAIV 119
           P +AI 
Sbjct: 341 PTNAIN 346



 Score = 42.4 bits (98), Expect = 0.023,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 17/49 (34%)

Query: 78  ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
                  R          Y +D   CI CG C +ACP  AI      EF
Sbjct: 277 PVYIGKYRKKYMDMLKRTYKVDDSLCIRCGACVDACPFHAITLKTIPEF 325


>gi|227824514|ref|ZP_03989346.1| 4Fe-4S ferredoxin [Acidaminococcus sp. D21]
 gi|226905013|gb|EEH90931.1| 4Fe-4S ferredoxin [Acidaminococcus sp. D21]
          Length = 57

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 11/65 (16%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
             +   ++ CI C  C   CP  AI+ ++G            Y +D   CI C  C  AC
Sbjct: 1   MAHKIDQDACIGCGSCAGTCPVGAISEDNGK-----------YKVDEASCIDCDACTGAC 49

Query: 114 PVDAI 118
           PV AI
Sbjct: 50  PVGAI 54



 Score = 33.9 bits (76), Expect = 6.9,   Method: Composition-based stats.
 Identities = 13/27 (48%), Positives = 14/27 (51%)

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGP 122
           + ID   CI CG C   CPV AI E  
Sbjct: 3   HKIDQDACIGCGSCAGTCPVGAISEDN 29


>gi|255659932|ref|ZP_05405341.1| conserved domain protein [Mitsuokella multacida DSM 20544]
 gi|260847803|gb|EEX67810.1| conserved domain protein [Mitsuokella multacida DSM 20544]
          Length = 56

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 11/64 (17%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + CI+C  C A CP +AI+  +             Y+ID  KC+ CG C   CP
Sbjct: 1   MAYKINDDCISCGSCAATCPVEAISEGAE-----------HYEIDADKCVECGACAAGCP 49

Query: 115 VDAI 118
           V AI
Sbjct: 50  VSAI 53


>gi|298528241|ref|ZP_07015645.1| NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511893|gb|EFI35795.1| NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 375

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 19/60 (31%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E+CI C  C  IC                  +        + C +CG C   CP  A+
Sbjct: 146 EMEKCIMCGQCVRICDEIQGVGAIDFAYKGLWTKVCPPFEKDLDCEFCGQCVAVCPTGAL 205


>gi|119944507|ref|YP_942187.1| electron transport complex, RnfABCDGE type, C subunit [Psychromonas
           ingrahamii 37]
 gi|119863111|gb|ABM02588.1| electron transport complex, RnfABCDGE type, C subunit [Psychromonas
           ingrahamii 37]
          Length = 857

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 2/66 (3%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C  C  +CPA  +  +               + ++  CI CG C   CP   I    
Sbjct: 388 CIRCGECSDVCPA-VLLPQQLLWYSKSQDHEKLDEYNLPSCIECGACAFVCP-SNIPLVE 445

Query: 123 NFEFAT 128
            +  A 
Sbjct: 446 YYRVAK 451


>gi|39995635|ref|NP_951586.1| nitroreductase family protein [Geobacter sulfurreducens PCA]
 gi|39982398|gb|AAR33859.1| nitroreductase family protein [Geobacter sulfurreducens PCA]
          Length = 274

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 7/69 (10%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI-VEG 121
           C  C  C ++CP + +         +G       +    +CI CG C+  CP  A+ V+ 
Sbjct: 11  CTRCGACVSVCPLRIV------ELPEGNLPPRFTEEGAGRCIICGHCEAVCPTAALAVDD 64

Query: 122 PNFEFATET 130
           P  + A  +
Sbjct: 65  PRLDPAVYS 73


>gi|125974915|ref|YP_001038825.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           thermocellum ATCC 27405]
 gi|125715140|gb|ABN53632.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           thermocellum ATCC 27405]
 gi|316939126|gb|ADU73160.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           thermocellum DSM 1313]
          Length = 439

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 19/54 (35%), Gaps = 1/54 (1%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           + CI C  C   CP   + +        G    +     M  CI CG C   CP
Sbjct: 362 QACIRCGRCVRACPMNLLPLYLNNNSIRGNIEELNRYHVMD-CIECGSCAYVCP 414



 Score = 37.4 bits (85), Expect = 0.77,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 25/114 (21%), Gaps = 18/114 (15%)

Query: 12  FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71
           F+ E++           K + T++ P  K                      C    +   
Sbjct: 269 FISEYIK----TGMPLIKKRVTVDGPSVKRP---GNVEVLIGTPISEVFSFCGGFGIVPK 321

Query: 72  ICPAQ------AITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEACP 114
                      A      P             T         CI CG C  ACP
Sbjct: 322 KILMGGPMMGIAQYTLDTPVLKHTNALLAFDETTAVLPKEQACIRCGRCVRACP 375


>gi|330795628|ref|XP_003285874.1| dihydropyrimidine dehydrogenase [Dictyostelium purpureum]
 gi|325084179|gb|EGC37613.1| dihydropyrimidine dehydrogenase [Dictyostelium purpureum]
          Length = 944

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 19/75 (25%), Gaps = 8/75 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117
            E++CI C  C   C                        +    C  C LC   CPV   
Sbjct: 872 DEDKCINCGKCYMTCN-------DSGYQAIQFDGKTHIPLVTDLCTGCDLCLSVCPVPDC 924

Query: 118 IVEGPNFEFATETRQ 132
           I   P        R 
Sbjct: 925 ITMVPRTTVYKPDRG 939


>gi|323142517|ref|ZP_08077333.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT 12067]
 gi|322412950|gb|EFY03853.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT 12067]
          Length = 278

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 23/63 (36%), Gaps = 11/63 (17%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             CI C  C   CP +AIT+                 ID   CI CG C   CP  AI  
Sbjct: 221 NACIGCTKCAQNCPMRAITMHERQA-----------TIDRRLCIICGKCAHGCPKQAICY 269

Query: 121 GPN 123
             N
Sbjct: 270 QSN 272


>gi|302336981|ref|YP_003802187.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Spirochaeta
           smaragdinae DSM 11293]
 gi|301634166|gb|ADK79593.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Spirochaeta
           smaragdinae DSM 11293]
          Length = 323

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 24/87 (27%), Positives = 32/87 (36%), Gaps = 20/87 (22%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
            G   C  C+ C A+CP  AI     P             +   +CIYC  C + CP  +
Sbjct: 246 EGANACTLCRSCYAVCPTSAIQFAPHP-------------VFTDRCIYCFNCVKLCPNGS 292

Query: 118 IVEGPNFEFATETRQELYYDKERLLNN 144
           I        A    +E +  K  LL N
Sbjct: 293 I-------VADLVSKERFLHKTSLLRN 312


>gi|291544451|emb|CBL17560.1| electron transport complex, RnfABCDGE type, C subunit [Ruminococcus
           sp. 18P13]
          Length = 426

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 24/75 (32%), Gaps = 2/75 (2%)

Query: 41  GSTSPRFRGEHALRRYP-NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
                      AL  Y  N E  CI C  C   CP + +      + +          + 
Sbjct: 333 TPIGKPNNAILALEHYQENPETACIRCGRCMHACPMR-LMPTELEKAYRTRDVAALQKLK 391

Query: 100 MIKCIYCGLCQEACP 114
           +  C+ CG C   CP
Sbjct: 392 LSLCMNCGSCTYVCP 406



 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 2/39 (5%)

Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERL 141
           CI CG C  ACP    +     E A  TR      K +L
Sbjct: 356 CIRCGRCMHACP--MRLMPTELEKAYRTRDVAALQKLKL 392


>gi|262382202|ref|ZP_06075340.1| F420H2:quinone oxidoreductase [Bacteroides sp. 2_1_33B]
 gi|262297379|gb|EEY85309.1| F420H2:quinone oxidoreductase [Bacteroides sp. 2_1_33B]
          Length = 415

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 6/62 (9%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
             +   +  C  C  C   CP   I +             +  ++D   CI CGLC++ C
Sbjct: 1   MIHITDKRDCCGCNSCVQRCPKSCIRMREDDEG------FLYPEVDESVCIDCGLCEKVC 54

Query: 114 PV 115
           PV
Sbjct: 55  PV 56


>gi|288930543|ref|YP_003434603.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
 gi|288892791|gb|ADC64328.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus
           placidus DSM 10642]
          Length = 438

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 4/66 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR----YDIDMIKCIYCGLCQEACP 114
              +C  C +C A CP  A       +  +     +       ID  KC+ C LC + CP
Sbjct: 68  DHIKCSYCGICYAFCPFNAFDFYINEKRVEKQELPLTLSGETRIDREKCVNCTLCFKVCP 127

Query: 115 VDAIVE 120
            +AI  
Sbjct: 128 TNAISL 133



 Score = 42.0 bits (97), Expect = 0.029,   Method: Composition-based stats.
 Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 2/71 (2%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R E    +     E+C  C +C   C      +       +         ID  KC YC 
Sbjct: 145 RNEGVEGKVEIDREKCNLCGICAEFCEV--FQMVEKEPHPEDVMPYEDILIDETKCDYCK 202

Query: 108 LCQEACPVDAI 118
           LC+  CP +AI
Sbjct: 203 LCERVCPEEAI 213



 Score = 39.7 bits (91), Expect = 0.12,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 4/84 (4%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           EK            +        +C  CKLCE +CP +AI +E      D +      D+
Sbjct: 177 EKEPHPEDVMPYEDILIDE---TKCDYCKLCERVCPEEAIRVEGKLIEADVSDYAFV-DV 232

Query: 99  DMIKCIYCGLCQEACPVDAIVEGP 122
           +  +C  C  C+E CP DAI    
Sbjct: 233 NNEECSRCSYCEEVCPYDAITVSK 256



 Score = 37.8 bits (86), Expect = 0.55,   Method: Composition-based stats.
 Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 1/82 (1%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           E+       R E   RR     ++C  C +C   CP  AI +        G        +
Sbjct: 9   EENKFIFIQRAEDEERRLIYDYKKCNGCGICVYACPINAIELGPVHDIALGLE-MPPITL 67

Query: 99  DMIKCIYCGLCQEACPVDAIVE 120
           D IKC YCG+C   CP +A   
Sbjct: 68  DHIKCSYCGICYAFCPFNAFDF 89



 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 18/30 (60%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
            D  KC  CG+C  ACP++AI  GP  + A
Sbjct: 28  YDYKKCNGCGICVYACPINAIELGPVHDIA 57



 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 4/62 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV----RYDIDMIKCIYCGLCQEACP 114
             E+C+ C LC  +CP  AI+++   +  D  +R      + +ID  KC  CG+C E C 
Sbjct: 112 DREKCVNCTLCFKVCPTNAISLDFKIKREDIPQRNEGVEGKVEIDREKCNLCGICAEFCE 171

Query: 115 VD 116
           V 
Sbjct: 172 VF 173



 Score = 35.5 bits (80), Expect = 2.3,   Method: Composition-based stats.
 Identities = 21/95 (22%), Positives = 32/95 (33%), Gaps = 8/95 (8%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P++  + S    GE  L          + C  C  +C           R    ++   R
Sbjct: 247 CPYDAITVSKPIYGELYLYEPRMYRCDPVGCGACIKVCKHN--------RVWYVSKDKGR 298

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
              +   C YCG C+ +CP D I    +  F  E 
Sbjct: 299 VHYNEKFCNYCGACENSCPYDLIAVKRDAVFTIEN 333



 Score = 34.3 bits (77), Expect = 5.5,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 3/55 (5%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
             E C  C  CE +CP  AIT+               Y  D    + CG C + C
Sbjct: 233 NNEECSRCSYCEEVCPYDAITVSKPIYGELYLYEPRMYRCDP---VGCGACIKVC 284


>gi|283796028|ref|ZP_06345181.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium
           sp. M62/1]
 gi|291076236|gb|EFE13600.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium
           sp. M62/1]
          Length = 263

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 11/60 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +  CI C LC   C   AI +++               ID  KC  CG C E CPV  I
Sbjct: 214 CDAGCIGCTLCTKQCEFDAIHMDNNVAV-----------IDYEKCTNCGKCAEKCPVKVI 262



 Score = 37.4 bits (85), Expect = 0.69,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 5/70 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCH-----DGTRRTVRYDIDMIKCIYCGLCQEAC 113
            +E+C+AC  C A CP + I +      H        +           CI C LC + C
Sbjct: 169 DKEKCVACGKCVAACPQKLIELVPYKAEHLVQCNSHDKGPAVKAKCDAGCIGCTLCTKQC 228

Query: 114 PVDAIVEGPN 123
             DAI    N
Sbjct: 229 EFDAIHMDNN 238



 Score = 37.0 bits (84), Expect = 0.86,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 22/67 (32%), Gaps = 11/67 (16%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
                  C+    C A C   AI +  G              +D  KC+ CG C  ACP 
Sbjct: 137 DKACSYGCMGFGSCVAACQFDAIHVVDGIAV-----------VDKEKCVACGKCVAACPQ 185

Query: 116 DAIVEGP 122
             I   P
Sbjct: 186 KLIELVP 192


>gi|255656355|ref|ZP_05401764.1| indolepyruvate oxidoreductase subunit [Clostridium difficile
           QCD-23m63]
 gi|296450201|ref|ZP_06891962.1| isoquinoline 1-oxidoreductase, alpha subunit [Clostridium difficile
           NAP08]
 gi|296878582|ref|ZP_06902587.1| isoquinoline 1-oxidoreductase, alpha subunit [Clostridium difficile
           NAP07]
 gi|296260964|gb|EFH07798.1| isoquinoline 1-oxidoreductase, alpha subunit [Clostridium difficile
           NAP08]
 gi|296430389|gb|EFH16231.1| isoquinoline 1-oxidoreductase, alpha subunit [Clostridium difficile
           NAP07]
          Length = 595

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 10/60 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++CI CKLC          +++G       +     +ID  +C+ CG+C + CP  AI
Sbjct: 541 DHDKCIGCKLC----------LKTGCPALSFDKENKLSNIDRNQCVGCGVCAQVCPKQAI 590


>gi|150398095|ref|YP_001328562.1| formate dehydrogenase subunit alpha [Sinorhizobium medicae WSM419]
 gi|150029610|gb|ABR61727.1| formate dehydrogenase, alpha subunit [Sinorhizobium medicae WSM419]
          Length = 959

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 27/85 (31%), Gaps = 3/85 (3%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMI 101
                + +   +     +CI C  C   C     T     SG          +  D    
Sbjct: 160 KWMPKDESNPYFTYDPAKCIVCSRCVRACEEVQGTFALTISGRGFDSRVSAGMNEDFVSS 219

Query: 102 KCIYCGLCQEACPVDAIVEGPNFEF 126
           +C+ CG C +ACP   + E    E 
Sbjct: 220 ECVSCGACVQACPTATLTEKSVIEI 244


>gi|71906705|ref|YP_284292.1| 4Fe-4S ferredoxin, iron-sulfur binding [Dechloromonas aromatica
           RCB]
 gi|71846326|gb|AAZ45822.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Dechloromonas
           aromatica RCB]
          Length = 451

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 19/46 (41%)

Query: 70  EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           EA+C              D T  +V YD     CI CG+C + CP 
Sbjct: 215 EAVCQHMCPYSRFQGVMFDETTASVSYDQQRSDCIDCGICVQVCPT 260



 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/89 (22%), Positives = 26/89 (29%), Gaps = 25/89 (28%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
             Y      CI C +C  +CP                      D    +CI CGLC +AC
Sbjct: 239 VSYDQQRSDCIDCGICVQVCPTG----------------IDIRDGLQYQCINCGLCVDAC 282

Query: 114 ---------PVDAIVEGPNFEFATETRQE 133
                    P   I      E A   + +
Sbjct: 283 DEVMLKIGSPTGLIRFASERELAGRPKAQ 311


>gi|73669778|ref|YP_305793.1| coenzyme F420-reducing hydrogenase subunit gamma [Methanosarcina
           barkeri str. Fusaro]
 gi|72396940|gb|AAZ71213.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanosarcina
           barkeri str. Fusaro]
          Length = 274

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 11/62 (17%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L      +  CI C +C A CP +AIT E G               D+  CI CG C  A
Sbjct: 194 LMDDVINQGLCIGCGICAASCPVRAITHEFGK-----------PQGDLNLCIKCGSCYGA 242

Query: 113 CP 114
           CP
Sbjct: 243 CP 244



 Score = 38.5 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNF 124
           I+   CI CG+C  +CPV AI     F
Sbjct: 199 INQGLCIGCGICAASCPVRAI--THEF 223


>gi|51244959|ref|YP_064843.1| fusion protein of heterodisulfide reductase, subunit A (HdrA) and
           hydrogenase, delta subunit (HydD) [Desulfotalea
           psychrophila LSv54]
 gi|50875996|emb|CAG35836.1| probable fusion protein of heterodisulfide reductase, subunit A
           (HdrA) and hydrogenase, delta subunit (HydD)
           [Desulfotalea psychrophila LSv54]
          Length = 753

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 10/63 (15%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            +RC  CK C   CP  A+  +                 +  +C  CG+C  ACP   I 
Sbjct: 544 MQRCTQCKRCTEECPFGALDDDEKGTPLP----------NPTRCRRCGICMGACPERIIG 593

Query: 120 EGP 122
              
Sbjct: 594 FKD 596


>gi|119385650|ref|YP_916705.1| iron-sulfur cluster binding protein [Paracoccus denitrificans
           PD1222]
 gi|119376245|gb|ABL71009.1| iron-sulfur cluster binding protein [Paracoccus denitrificans
           PD1222]
          Length = 471

 Score = 43.2 bits (100), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 23/105 (21%), Gaps = 10/105 (9%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA----Q 76
           +       K     + P E             L        RCI C  C   C       
Sbjct: 270 YTTFHAGPKRPGDADGPEEMHIVLVDNGRTKMLADEFREMLRCIRCGACMNHCVVYRQIG 329

Query: 77  AITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEACPV 115
                       G+  T   D           C   G C E CPV
Sbjct: 330 GHAYGGTYPGPMGSVLTPVLDGLAASRDLPNACTMNGRCAEVCPV 374


>gi|332297497|ref|YP_004439419.1| electron transport complex, RnfABCDGE type, B subunit [Treponema
           brennaborense DSM 12168]
 gi|332180600|gb|AEE16288.1| electron transport complex, RnfABCDGE type, B subunit [Treponema
           brennaborense DSM 12168]
          Length = 271

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 24/80 (30%), Gaps = 7/80 (8%)

Query: 57  PNGEERCIACKLCEAICPAQ-------AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
                +C  C +C A CP         A         +  T +          CI CG C
Sbjct: 164 HVDYAKCTGCGMCVAECPQGLFAKVDSARKGAVARCSNRSTNKAPIIKQCKTGCIKCGKC 223

Query: 110 QEACPVDAIVEGPNFEFATE 129
           + ACP  A+V          
Sbjct: 224 ERACPEHALVVTNGIPLVDY 243



 Score = 40.9 bits (94), Expect = 0.058,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 27/76 (35%), Gaps = 11/76 (14%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R  +        +  CI C  CE  CP  A+ + +G              +D  KC  CG
Sbjct: 202 RSTNKAPIIKQCKTGCIKCGKCERACPEHALVVTNGIPL-----------VDYGKCTSCG 250

Query: 108 LCQEACPVDAIVEGPN 123
            C + CP   +    N
Sbjct: 251 ECIKGCPTHVLELVEN 266



 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 10/56 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
               CI    C A+C   A+ ++     H          +D  KC  CG+C   CP
Sbjct: 136 CSYGCIGFADCVAVCKFDALAMKDDGLPH----------VDYAKCTGCGMCVAECP 181


>gi|332295879|ref|YP_004437802.1| formate dehydrogenase, alpha subunit [Thermodesulfobium narugense
           DSM 14796]
 gi|332178982|gb|AEE14671.1| formate dehydrogenase, alpha subunit [Thermodesulfobium narugense
           DSM 14796]
          Length = 911

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 11/111 (9%)

Query: 13  LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
           L++    F + +  F         P E    +  F             ++C+ C+ C   
Sbjct: 112 LQDLAYQFGIKISQFLDKNEAFYTPKETAWDTNSFIQF--------DPQKCVLCRRCIGA 163

Query: 73  CPAQA-ITIESGPRCHDGTRRTVRYDIDMI--KCIYCGLCQEACPVDAIVE 120
           C  Q+ I           +  +  ++I +    C +C  C +ACP  A++E
Sbjct: 164 CENQSLIEAIGIAMRGYRSTISTPFNIPLEQTNCQFCAECVQACPTGALIE 214


>gi|322806449|emb|CBZ04018.1| ferredoxin [Clostridium botulinum H04402 065]
          Length = 273

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 53/153 (34%), Gaps = 31/153 (20%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRY--PN 58
           M I R     ++ K         ++  F    T   P+ K       +G+    R   P 
Sbjct: 145 MDIVRTLADEIYTKIISEKI---IKTVFVKGNT---PYRKYYMPKDEKGQPIDIRKVKPK 198

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI CKLC  +CP  +I  E   + +               CI C  C + CPV A 
Sbjct: 199 TNNNCINCKLCANLCPIGSIDFEDVTKLN-------------GICIKCCACIKKCPVGA- 244

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
                F+ +      L + KE  L N  R+  E
Sbjct: 245 ---KYFDDSGY----LKHKKE--LENNFRYRKE 268


>gi|241758780|ref|ZP_04756893.1| iron-sulfur cluster-binding protein [Neisseria flavescens SK114]
 gi|241320988|gb|EER57201.1| iron-sulfur cluster-binding protein [Neisseria flavescens SK114]
          Length = 483

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 18/65 (27%), Gaps = 10/65 (15%)

Query: 62  RCIACKLCEAICPA-----QAITIES-----GPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           +CI C  C   CP       A    +     G                   C  CG C E
Sbjct: 317 QCIRCGACMNHCPVYTRIGGAAYGTTYPGPIGEIISPHLLGLDATRDLPTACTMCGACVE 376

Query: 112 ACPVD 116
            CPV 
Sbjct: 377 VCPVR 381


>gi|291296029|ref|YP_003507427.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Meiothermus ruber DSM 1279]
 gi|290470988|gb|ADD28407.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Meiothermus
           ruber DSM 1279]
          Length = 321

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 5/74 (6%)

Query: 47  FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
           +R +          E C  C +C  +CP +A+  E  P   +   +     +++  C  C
Sbjct: 228 YRAQAVRWPRIAVAEGCTLCPVCSNVCPTKAVERERAPGGEEYVLK-----LNVSACTGC 282

Query: 107 GLCQEACPVDAIVE 120
           G C E+CP   I  
Sbjct: 283 GACLESCPPQVISL 296



 Score = 38.5 bits (88), Expect = 0.34,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 11/55 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           C  C+ +CP  AI +ES              +ID +KC  CGLC   CP  A+  
Sbjct: 36  CDKCQQVCPHGAINLES-----------FTAEIDEVKCTSCGLCTAVCPGLALEF 79


>gi|257066577|ref|YP_003152833.1| hydrogenase, Fe-only [Anaerococcus prevotii DSM 20548]
 gi|256798457|gb|ACV29112.1| hydrogenase, Fe-only [Anaerococcus prevotii DSM 20548]
          Length = 577

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 3/68 (4%)

Query: 59  GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQEACPV 115
              +CI C+ CE +C   Q +   +       T     ++  +    C +CG C   CP 
Sbjct: 147 DPNKCILCRRCETMCNEVQTVGALAEVGRGFYTHVGSTFNRSMFETTCTFCGQCLSVCPT 206

Query: 116 DAIVEGPN 123
            A+ E  N
Sbjct: 207 GALTEKSN 214


>gi|261380945|ref|ZP_05985518.1| iron-sulfur cluster-binding protein [Neisseria subflava NJ9703]
 gi|284796202|gb|EFC51549.1| iron-sulfur cluster-binding protein [Neisseria subflava NJ9703]
          Length = 484

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 18/65 (27%), Gaps = 10/65 (15%)

Query: 62  RCIACKLCEAICPA-----QAITIES-----GPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           +CI C  C   CP       A    +     G                   C  CG C E
Sbjct: 317 QCIRCGACMNHCPVYTRIGGAAYGTTYPGPIGEIISPHLLGLDATRDLPTACTMCGACVE 376

Query: 112 ACPVD 116
            CPV 
Sbjct: 377 VCPVR 381


>gi|242309240|ref|ZP_04808395.1| subunit of 2-oxoglutarate oxidoreductase [Helicobacter pullorum MIT
           98-5489]
 gi|239524281|gb|EEQ64147.1| subunit of 2-oxoglutarate oxidoreductase [Helicobacter pullorum MIT
           98-5489]
          Length = 103

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E RC AC LC ++CP+  + +        G    V   I+   CI CG C+  CP  
Sbjct: 13  WVNESRCKACDLCVSVCPSGTLAMCLDEHKVLGKMVKV---INPESCIGCGECELHCPDF 69

Query: 117 AIVEGPNFEF 126
           AI      EF
Sbjct: 70  AIAVADRKEF 79


>gi|169335902|ref|ZP_02863095.1| hypothetical protein ANASTE_02337 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258640|gb|EDS72606.1| hypothetical protein ANASTE_02337 [Anaerofustis stercorihominis DSM
           17244]
          Length = 202

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 13/84 (15%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            +P  + + S  F GE    +     E CI CK C  +CP  AI   +G           
Sbjct: 129 KHPIYRQTLS--FGGEKIKDKGYFINETCINCKKCFNLCPQSAIYELNG----------- 175

Query: 95  RYDIDMIKCIYCGLCQEACPVDAI 118
             +I    C++CGLC E CPV A+
Sbjct: 176 IMNIKNENCLHCGLCYENCPVKAV 199


>gi|188586494|ref|YP_001918039.1| Electron transfer flavoprotein alpha/beta-subunit [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|179351181|gb|ACB85451.1| Electron transfer flavoprotein alpha/beta-subunit [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 410

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPN 123
           I   KC  C LC +ACP +AI    +
Sbjct: 5   ILTDKCKGCALCVDACPFEAIEMKDD 30



 Score = 38.9 bits (89), Expect = 0.20,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 12/63 (19%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ++C  C LC   CP +AI ++      +              C  CG C E+C   AI++
Sbjct: 8   DKCKGCALCVDACPFEAIEMKDDIAVLN------------ESCTNCGACIESCKFGAIIK 55

Query: 121 GPN 123
              
Sbjct: 56  EEE 58


>gi|160934322|ref|ZP_02081709.1| hypothetical protein CLOLEP_03193 [Clostridium leptum DSM 753]
 gi|156866995|gb|EDO60367.1| hypothetical protein CLOLEP_03193 [Clostridium leptum DSM 753]
          Length = 368

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 11/79 (13%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           +E+C+ C++C   C   AI+                 +I+   C  CG C   C  DAI 
Sbjct: 194 QEQCVGCRVCAKSCAHDAISFTDKKA-----------NINHSLCAGCGRCIGVCHRDAIK 242

Query: 120 EGPNFEFATETRQELYYDK 138
              +  F    ++   Y K
Sbjct: 243 PADDESFDILNQKVAEYTK 261


>gi|114705752|ref|ZP_01438655.1| Iron-sulfur cluster binding protein [Fulvimarina pelagi HTCC2506]
 gi|114538598|gb|EAU41719.1| Iron-sulfur cluster binding protein [Fulvimarina pelagi HTCC2506]
          Length = 483

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/104 (19%), Positives = 29/104 (27%), Gaps = 10/104 (9%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-QAIT 79
           +       K     + P E           + L        RCI C  C   CP   A+ 
Sbjct: 272 YTTFSTGPKRTEDPDGPDEYHVILLDNGRTNMLGTEFEDMLRCIRCGACMNHCPVYHAVG 331

Query: 80  IESGPRCHDGTR--RTVRYDIDMIKC-------IYCGLCQEACP 114
             +    + G          I +           +CG C+E CP
Sbjct: 332 GHAYGWVYPGPMGAVLTPALIGVEDGKLLPNASTFCGRCEEVCP 375



 Score = 34.3 bits (77), Expect = 5.7,   Method: Composition-based stats.
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 100 MIKCIYCGLCQEACPVD 116
           M++CI CG C   CPV 
Sbjct: 311 MLRCIRCGACMNHCPVY 327


>gi|222053345|ref|YP_002535707.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32]
 gi|221562634|gb|ACM18606.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32]
          Length = 637

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 10/62 (16%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L  Y    E+C AC  C   CPA AI             +   + +D  KC  CG C +A
Sbjct: 556 LFSYYIEPEKCQACTSCGKKCPAGAIEG----------GKNQIHMVDQAKCTKCGACLQA 605

Query: 113 CP 114
           CP
Sbjct: 606 CP 607



 Score = 34.7 bits (78), Expect = 4.0,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 16/44 (36%)

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
              G       +    Y I+  KC  C  C + CP  AI  G N
Sbjct: 543 HMEGKCPAFTCKSLFSYYIEPEKCQACTSCGKKCPAGAIEGGKN 586


>gi|15678771|ref|NP_275888.1| hypothetical protein MTH745 [Methanothermobacter thermautotrophicus
           str. Delta H]
 gi|2621834|gb|AAB85249.1| unknown (contains ferredoxin domain) [Methanothermobacter
           thermautotrophicus str. Delta H]
          Length = 273

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 24/71 (33%), Gaps = 12/71 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  C+ C  CE  C   AI +                     KC+ CG C E CP  AI
Sbjct: 202 EESSCVLCGRCEEACFTGAIAVGKELEHD------------ARKCLICGRCAERCPEGAI 249

Query: 119 VEGPNFEFATE 129
               + E   E
Sbjct: 250 KIIMDPEAVDE 260


>gi|328953250|ref|YP_004370584.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfobacca acetoxidans DSM 11109]
 gi|328453574|gb|AEB09403.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfobacca acetoxidans DSM 11109]
          Length = 300

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 26/97 (26%), Positives = 34/97 (35%), Gaps = 14/97 (14%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             L ++    E CI C  CE  CP Q I I+  P                  CIYC  C 
Sbjct: 189 EMLPKHHFNAETCIQCYECEDHCPVQGIDIKIDPPR------------LQEPCIYCWRCI 236

Query: 111 EACPVDAI--VEGPNFEFATETRQELYYDKERLLNNG 145
             CP  +I    GP    A         + +++  NG
Sbjct: 237 NICPTLSITADWGPLLAMAPTNYVRYKKELDKVAKNG 273


>gi|319937321|ref|ZP_08011728.1| HymC protein [Coprobacillus sp. 29_1]
 gi|319807687|gb|EFW04280.1| HymC protein [Coprobacillus sp. 29_1]
          Length = 582

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 3/68 (4%)

Query: 59  GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115
              +CI C  C A C   Q + I         T+    +D  +    C+ CG C   CPV
Sbjct: 144 NTAKCILCGRCVAACKKHQGLGILGFMERGFKTKVGPVFDRSLNDVNCMQCGQCINVCPV 203

Query: 116 DAIVEGPN 123
            A+ E   
Sbjct: 204 GALQEKEE 211


>gi|261403810|ref|YP_003248034.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus vulcanius M7]
 gi|261370803|gb|ACX73552.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus vulcanius M7]
          Length = 164

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 63  CIACKLCEAICPAQAITIESGP--RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           CI C+ C  +CP +AI +      +  +   +     I+  KC+YC  C + CPV ++ 
Sbjct: 54  CIGCEGCANVCPTKAIEMIPIEPIKITENYVKDKIPKINAEKCVYCLYCHDFCPVFSVF 112



 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 10/27 (37%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPN 123
            +    CI C  C   CP  AI   P 
Sbjct: 48  TVIEELCIGCEGCANVCPTKAIEMIPI 74


>gi|225571973|ref|ZP_03780837.1| hypothetical protein RUMHYD_00267 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040506|gb|EEG50752.1| hypothetical protein RUMHYD_00267 [Blautia hydrogenotrophica DSM
           10507]
          Length = 742

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           E C  C  C+ ICP  AI++E+               +D  KCI CGLCQ+ C
Sbjct: 381 EECYGCYACKEICPKDAISMETDEEGFYYP------SVDHEKCISCGLCQKVC 427



 Score = 35.1 bits (79), Expect = 3.5,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 14/28 (50%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           I   +C  C  C+E CP DAI    + E
Sbjct: 378 ILKEECYGCYACKEICPKDAISMETDEE 405


>gi|224371828|ref|YP_002605992.1| Glutamate synthase [Desulfobacterium autotrophicum HRM2]
 gi|223694545|gb|ACN17828.1| Glutamate synthase [Desulfobacterium autotrophicum HRM2]
          Length = 544

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 28/84 (33%), Gaps = 15/84 (17%)

Query: 54  RRYPNGEERCIACKLCEAICPAQA---------------ITIESGPRCHDGTRRTVRYDI 98
            +    ++RC  C  C A+CP QA                 +E      D      +   
Sbjct: 19  WQIDWKKDRCTLCGQCTAVCPVQAIELAVFRKRNLVTSIHRVEDNRSTFDTFYGIKQKTT 78

Query: 99  DMIKCIYCGLCQEACPVDAIVEGP 122
               CI C +C   CP DAI   P
Sbjct: 79  IAEACIGCAMCSMVCPNDAIEPNP 102



 Score = 39.7 bits (91), Expect = 0.14,   Method: Composition-based stats.
 Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 6/35 (17%)

Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
            +C  CG C   CPV AI      E A   ++ L 
Sbjct: 26  DRCTLCGQCTAVCPVQAI------ELAVFRKRNLV 54


>gi|206895457|ref|YP_002246544.1| ferredoxin 2 [Coprothermobacter proteolyticus DSM 5265]
 gi|206738074|gb|ACI17152.1| ferredoxin 2 [Coprothermobacter proteolyticus DSM 5265]
          Length = 450

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 11/59 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
            EE+C  C  C   CPA+AI + +G              I    CI CG C  ACP  A
Sbjct: 15  DEEKCKGCTNCIKRCPAEAIRVRNGKA-----------RIIDQLCIDCGECIRACPNHA 62


>gi|171316162|ref|ZP_02905386.1| formate dehydrogenase, alpha subunit [Burkholderia ambifaria MEX-5]
 gi|171098671|gb|EDT43466.1| formate dehydrogenase, alpha subunit [Burkholderia ambifaria MEX-5]
          Length = 983

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 20/69 (28%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     +                   +C+ CG C  
Sbjct: 187 YFTYDPSKCIVCNRCVRACEETQGTFALTIAARGFESRVVAGESESFMASECVSCGACVA 246

Query: 112 ACPVDAIVE 120
           ACP   + E
Sbjct: 247 ACPTATLQE 255


>gi|167759017|ref|ZP_02431144.1| hypothetical protein CLOSCI_01364 [Clostridium scindens ATCC 35704]
 gi|167663424|gb|EDS07554.1| hypothetical protein CLOSCI_01364 [Clostridium scindens ATCC 35704]
          Length = 263

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 28/83 (33%), Gaps = 11/83 (13%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P+++         +            CI CK+CE +C   A+ +               
Sbjct: 191 VPYDQKHLVQCSSKDKGKDVMKACSVGCIGCKMCEKVCEFDAVKVVDNIAH--------- 241

Query: 96  YDIDMIKCIYCGLCQEACPVDAI 118
             ID  KC  CG C + CP   I
Sbjct: 242 --IDPEKCTNCGACAQKCPKKII 262


>gi|148655927|ref|YP_001276132.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Roseiflexus sp. RS-1]
 gi|148568037|gb|ABQ90182.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Roseiflexus
           sp. RS-1]
          Length = 565

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 23/65 (35%), Gaps = 12/65 (18%)

Query: 61  ERCIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            RC  C    C  ICP  A+   S        R           CI C  C +ACP DAI
Sbjct: 56  TRCNHCANPPCVRICPVTAMYQRSDGIVEFDPRV----------CIGCKACLQACPYDAI 105

Query: 119 VEGPN 123
              P 
Sbjct: 106 YIDPE 110



 Score = 42.0 bits (97), Expect = 0.024,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 27/88 (30%), Gaps = 17/88 (19%)

Query: 59  GEERCIACKLCEAICPAQA-----ITIESGPRCHDGTRRTVRYDIDMIKCIYCGL--CQE 111
              +CI C  C   C ++      +          GT    R    + +C +C    C  
Sbjct: 9   DHRKCIGCHACSTACKSENEVPLGVYRTWVKYVEAGTFPDTRRYFQVTRCNHCANPPCVR 68

Query: 112 ACPVDAIVEGPNFEFATETRQELYYDKE 139
            CPV A+            R +   + +
Sbjct: 69  ICPVTAM----------YQRSDGIVEFD 86



 Score = 42.0 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 36/122 (29%), Gaps = 12/122 (9%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCL-RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           R +   V      +    F +    +          P     T+   R +  +   P   
Sbjct: 35  RTWVKYVEAGTFPDTRRYFQVTRCNHCANPPCVRICP----VTAMYQRSDGIVEFDP--- 87

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             CI CK C   CP  AI I+   R               +K      C+  CP  AI+ 
Sbjct: 88  RVCIGCKACLQACPYDAIYIDPETRSAAKCHFCSHRIELGLK----PACEVVCPEQAIIS 143

Query: 121 GP 122
           G 
Sbjct: 144 GD 145


>gi|51244861|ref|YP_064745.1| Fe-S oxidoreductase [Desulfotalea psychrophila LSv54]
 gi|50875898|emb|CAG35738.2| probable Fe-S oxidoreductase [Desulfotalea psychrophila LSv54]
          Length = 495

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 32/96 (33%), Gaps = 5/96 (5%)

Query: 24  LRYFFKAKTTINYPFEKGSTSPRFRGEH-ALRRYPNGEERCIACKLCEAICP----AQAI 78
           L +  K   TI    +         G+  AL   P+    C+ C  C A CP        
Sbjct: 63  LNHVHKDPCTIQQEAQPILEPMTLDGKKSALAVDPSWASSCLTCGTCAAACPIAGVDGLD 122

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
             +       G    +       KC  CG C+E+CP
Sbjct: 123 PRKIVRMAVLGMDEELINSTWPWKCTMCGKCEESCP 158


>gi|88803596|ref|ZP_01119121.1| Pyridine nucleotide-disulphide oxidoreductase domain protein
           [Polaribacter irgensii 23-P]
 gi|88780608|gb|EAR11788.1| Pyridine nucleotide-disulphide oxidoreductase domain protein
           [Polaribacter irgensii 23-P]
          Length = 540

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 10/67 (14%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R +   R   NG  +CI+C  C   C           +           +I    C+ CG
Sbjct: 449 RFKSRFRITTNG-GQCISCGNCSTYCEQGIDVRAYAQKGE---------NIVRSSCVGCG 498

Query: 108 LCQEACP 114
           +C   CP
Sbjct: 499 ICSAVCP 505


>gi|317125936|ref|YP_004100048.1| polysulphide reductase NrfD [Intrasporangium calvum DSM 43043]
 gi|315590024|gb|ADU49321.1| Polysulphide reductase NrfD [Intrasporangium calvum DSM 43043]
          Length = 508

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 23/73 (31%), Gaps = 22/73 (30%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG---------LC 109
             +RCI CK C   CP  AI I++                   KC  C           C
Sbjct: 85  DGDRCIGCKSCMQACPYDAIYIDAN-------------THTAAKCNLCAHRVDEGMEPAC 131

Query: 110 QEACPVDAIVEGP 122
              CP  +I  G 
Sbjct: 132 VVVCPTHSIWVGD 144



 Score = 42.4 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 22/93 (23%), Positives = 31/93 (33%), Gaps = 10/93 (10%)

Query: 33  TINYPFEKGSTSPRFRGEHALRR---YPNGEERC--IACKLCEAICPAQAITIESGPRCH 87
           T+    E      +FR          +P+       + C  C       A  ++  P   
Sbjct: 19  TVACKTEHEVPLGQFRTWVKYVDTGTFPDTTRSFGVMRCNHC-----TDAPCVKICPTQA 73

Query: 88  DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
              R     D D  +CI C  C +ACP DAI  
Sbjct: 74  LFKRDDGIVDFDGDRCIGCKSCMQACPYDAIYI 106



 Score = 41.2 bits (95), Expect = 0.049,   Method: Composition-based stats.
 Identities = 18/100 (18%), Positives = 29/100 (29%), Gaps = 22/100 (22%)

Query: 56  YPNGEERCIACKLCEAICPAQA-----ITIESGPRCHDGTRRTVRYDIDMIKCIYC--GL 108
           +   +  CI C  C   C  +                 GT         +++C +C    
Sbjct: 5   FAIDQRTCIGCHACTVACKTEHEVPLGQFRTWVKYVDTGTFPDTTRSFGVMRCNHCTDAP 64

Query: 109 CQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRW 148
           C + CP  A+            R +   D +     GDR 
Sbjct: 65  CVKICPTQAL----------FKRDDGIVDFD-----GDRC 89


>gi|291548566|emb|CBL24828.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta
           subunits [Ruminococcus torques L2-14]
          Length = 254

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 12/77 (15%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
            +R    +   P     C +C+LC A CP+ AI  ++  +                KCI 
Sbjct: 166 PYREYGTIPLIPGASHTCGSCRLCAAKCPSGAIPSDNPKQTDK------------DKCIS 213

Query: 106 CGLCQEACPVDAIVEGP 122
           C  C   CP  +    P
Sbjct: 214 CMRCISVCPTHSRKLNP 230


>gi|281418619|ref|ZP_06249638.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           thermocellum JW20]
 gi|281407703|gb|EFB37962.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           thermocellum JW20]
          Length = 439

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 19/54 (35%), Gaps = 1/54 (1%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           + CI C  C   CP   + +        G    +     M  CI CG C   CP
Sbjct: 362 QACIRCGRCVRACPMNLLPLYLNNNSIRGNIEELNRYHVMD-CIECGSCAYVCP 414



 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 18/114 (15%), Positives = 25/114 (21%), Gaps = 18/114 (15%)

Query: 12  FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71
           F+ E++           K + T++ P  K                      C    +   
Sbjct: 269 FISEYIK----TGMPLIKKRVTVDGPSVKRP---GNVEVLIGTPISEVFSFCGGFDIVPK 321

Query: 72  ICPAQ------AITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEACP 114
                      A      P             T         CI CG C  ACP
Sbjct: 322 KILMGGPMMGIAQYTLDTPVLKHTNALLAFDETTAVLPKEQACIRCGRCVRACP 375


>gi|255009556|ref|ZP_05281682.1| ferredoxin [Bacteroides fragilis 3_1_12]
 gi|313147332|ref|ZP_07809525.1| ferredoxin [Bacteroides fragilis 3_1_12]
 gi|313136099|gb|EFR53459.1| ferredoxin [Bacteroides fragilis 3_1_12]
          Length = 290

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 8/81 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------DMIKCIYCGLCQ 110
            EE+C AC  C   CP   I + +  +       +               + CI CG C 
Sbjct: 169 DEEKCTACGACVKACPKAIIELRAKGKKSRRVYVSCVNKDKGAVARKACTVSCIGCGKCV 228

Query: 111 EACPVDAIVEGPNFEFATETR 131
           + CP +AI    N  +    +
Sbjct: 229 KTCPFEAITLENNLAYIDYNK 249



 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 9/62 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C+ C  C A C   AI +                ++D  KC  CG C +ACP   I
Sbjct: 138 CSYGCLGCGDCVAACQFDAIHMNPETGLP---------EVDEEKCTACGACVKACPKAII 188

Query: 119 VE 120
             
Sbjct: 189 EL 190



 Score = 40.5 bits (93), Expect = 0.086,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 11/62 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI C  C   CP +AIT+E+               ID  KC  C  C E CP + I
Sbjct: 217 CTVSCIGCGKCVKTCPFEAITLENNLAY-----------IDYNKCKSCRKCVEVCPQNTI 265

Query: 119 VE 120
           +E
Sbjct: 266 IE 267


>gi|291296268|ref|YP_003507666.1| dihydroorotate dehydrogenase family protein [Meiothermus ruber DSM
           1279]
 gi|290471227|gb|ADD28646.1| dihydroorotate dehydrogenase family protein [Meiothermus ruber DSM
           1279]
          Length = 461

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 23/80 (28%), Gaps = 18/80 (22%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-----------------IDMI 101
             ++CI C LC   C   A                 RYD                 +   
Sbjct: 341 NPDKCIRCNLCYVACNDTAHQCIDLVDAAGNRVEPYRYDPRSNGKHQAVSTRPQPVVRED 400

Query: 102 KCIYCGLCQEACPVD-AIVE 120
            C+ C LC   CPVD  I  
Sbjct: 401 DCVGCRLCHNVCPVDGCIEM 420


>gi|225405381|ref|ZP_03760570.1| hypothetical protein CLOSTASPAR_04601 [Clostridium asparagiforme
           DSM 15981]
 gi|225043083|gb|EEG53329.1| hypothetical protein CLOSTASPAR_04601 [Clostridium asparagiforme
           DSM 15981]
          Length = 275

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 24/108 (22%), Positives = 36/108 (33%), Gaps = 12/108 (11%)

Query: 15  EFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP 74
           E         + F   K T++   +    +  F   +   R     E C+ C  C  +CP
Sbjct: 156 ERFAGLIREGKPFPGPKVTLDGRVKSSLVNRLFYPLYVNARGYYAAEACVGCGRCVKLCP 215

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
              I +E+G              +   KC  C  C   CPV A+  G 
Sbjct: 216 LNNIRLENGRP------------VWGRKCTQCMACICGCPVRAVEYGK 251


>gi|221272036|sp|A8XKG6|DPYD_CAEBR RecName: Full=Probable dihydropyrimidine dehydrogenase [NADP+];
            Short=DHPDHase; Short=DPD; AltName: Full=Dihydrothymine
            dehydrogenase; AltName: Full=Dihydrouracil dehydrogenase
 gi|309359452|emb|CAP33140.2| CBR-DPYD-1 protein [Caenorhabditis briggsae AF16]
          Length = 1053

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 22/65 (33%), Gaps = 7/65 (10%)

Query: 59   GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117
              + CI C  C   C       +SG +       T +  +    C  C LC   CP+   
Sbjct: 954  DHDMCINCGKCYMTCN------DSGYQAITFDAVTHQPHVTEDDCTGCTLCYSVCPIPEC 1007

Query: 118  IVEGP 122
            I   P
Sbjct: 1008 IQMVP 1012


>gi|171185525|ref|YP_001794444.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermoproteus neutrophilus V24Sta]
 gi|170934737|gb|ACB39998.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermoproteus
           neutrophilus V24Sta]
          Length = 284

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 26/76 (34%), Positives = 30/76 (39%), Gaps = 9/76 (11%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           RR     E+C AC LC  +CP QAI ++                    KC  CGLC EAC
Sbjct: 180 RRPAIDVEKCTACFLCAGVCPIQAIEVDEDEVMLKVDGY---------KCAECGLCAEAC 230

Query: 114 PVDAIVEGPNFEFATE 129
           P  AI      E    
Sbjct: 231 PEGAIKLVEGGEPVET 246



 Score = 33.9 bits (76), Expect = 7.8,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 11/50 (22%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           C+ C  +CPA A+ +E      +              C+ CG+C  ACP 
Sbjct: 20  CRKCVDVCPAGALYVEGRFVKAE-----------PSLCVGCGVCMSACPT 58


>gi|160935571|ref|ZP_02082946.1| hypothetical protein CLOBOL_00461 [Clostridium bolteae ATCC
           BAA-613]
 gi|158441315|gb|EDP19025.1| hypothetical protein CLOBOL_00461 [Clostridium bolteae ATCC
           BAA-613]
          Length = 351

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/98 (19%), Positives = 29/98 (29%), Gaps = 7/98 (7%)

Query: 25  RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84
            ++         P +    +    G   + +     +RCI C  C   C   A       
Sbjct: 141 SHYHIKVAVAGCPNDCVKANFNDFGIMGINKQVYDIDRCIGCGSCVDACKHHAT------ 194

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                  +  + D D   C+ CG C   CP  A   G 
Sbjct: 195 -GVLSLNQNGKIDKDACCCVGCGECSLICPTGAWTRGD 231


>gi|154505523|ref|ZP_02042261.1| hypothetical protein RUMGNA_03060 [Ruminococcus gnavus ATCC 29149]
 gi|153794181|gb|EDN76601.1| hypothetical protein RUMGNA_03060 [Ruminococcus gnavus ATCC 29149]
          Length = 531

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/82 (19%), Positives = 25/82 (30%), Gaps = 3/82 (3%)

Query: 55  RYPNGEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQE 111
                  +CI C  C   C   Q + I          +    +D  +    C+ CG C+ 
Sbjct: 91  CIVRDPNKCILCGDCVRTCEEIQGLGILDFAFRGSKMQVMPAFDRAMSQTDCVGCGQCRV 150

Query: 112 ACPVDAIVEGPNFEFATETRQE 133
            CP  AI    +         +
Sbjct: 151 VCPTGAISIKQDIAPVWTALAD 172


>gi|154497187|ref|ZP_02035883.1| hypothetical protein BACCAP_01480 [Bacteroides capillosus ATCC
           29799]
 gi|150273586|gb|EDN00714.1| hypothetical protein BACCAP_01480 [Bacteroides capillosus ATCC
           29799]
          Length = 891

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 5/62 (8%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
              C  C      C   AI   +     D  R     + D  KC+ CG C E CPV+A+ 
Sbjct: 253 YAICNCCG-----CGCYAIRNAAYYNAPDMVRSNYVAETDSEKCVACGQCVENCPVNALK 307

Query: 120 EG 121
            G
Sbjct: 308 LG 309



 Score = 33.9 bits (76), Expect = 7.3,   Method: Composition-based stats.
 Identities = 10/35 (28%), Positives = 14/35 (40%)

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
           +   CI CG C   C  DAI     +     T ++
Sbjct: 827 NQEMCIGCGQCTTKCKFDAIHLVKKYNVTYNTYEQ 861


>gi|220932905|ref|YP_002509813.1| pyruvate ferredoxin oxidoreductase, delta subunit [Halothermothrix
           orenii H 168]
 gi|219994215|gb|ACL70818.1| pyruvate ferredoxin oxidoreductase, delta subunit [Halothermothrix
           orenii H 168]
          Length = 110

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 10/63 (15%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E+CI C LC   CP  AI +E G              ID   C  CG+C   CPV A+  
Sbjct: 39  EKCIQCLLCHVYCPDIAIDVEEGKVIG----------IDYNHCKGCGICANQCPVQALEM 88

Query: 121 GPN 123
              
Sbjct: 89  ISE 91


>gi|315636782|ref|ZP_07892008.1| 2-oxoglutarate:acceptor oxidoreductase subunit OorD [Arcobacter
           butzleri JV22]
 gi|315478908|gb|EFU69615.1| 2-oxoglutarate:acceptor oxidoreductase subunit OorD [Arcobacter
           butzleri JV22]
          Length = 107

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 11/95 (11%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E RC AC  C ++CPA  + +        G+  TV        CI C  C+ ACP  
Sbjct: 13  WVDENRCKACDKCVSVCPAGVLAMRQEVHSTLGSMITVV---HPESCIGCSDCELACPDF 69

Query: 117 AIVEGPNFEF--------ATETRQELYYDKERLLN 143
           AI      EF        A   R+++  +K R+L+
Sbjct: 70  AIFVADRKEFKFAKLSEDAKVRREKIIENKYRILD 104


>gi|332654077|ref|ZP_08419821.1| conserved domain protein [Ruminococcaceae bacterium D16]
 gi|332517163|gb|EGJ46768.1| conserved domain protein [Ruminococcaceae bacterium D16]
          Length = 56

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 11/59 (18%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           CI+C  C   CP  AI   +             Y+I+   C+ CG C ++CP+ AI +G
Sbjct: 9   CISCGSCADACPVGAIAQGAD-----------HYEINAGACLDCGSCADSCPMSAISQG 56



 Score = 33.9 bits (76), Expect = 7.7,   Method: Composition-based stats.
 Identities = 12/24 (50%), Positives = 15/24 (62%)

Query: 101 IKCIYCGLCQEACPVDAIVEGPNF 124
             CI CG C +ACPV AI +G + 
Sbjct: 7   DACISCGSCADACPVGAIAQGADH 30


>gi|283853883|ref|ZP_06371097.1| nitroreductase [Desulfovibrio sp. FW1012B]
 gi|283570725|gb|EFC18771.1| nitroreductase [Desulfovibrio sp. FW1012B]
          Length = 300

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 11/62 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E C  C  C A+CP+  +    G           R       CI CG C+  CP  A+
Sbjct: 9   DAEACQGCGACVALCPSGVLAFAGG-----------RLVARQTGCIGCGHCEAVCPAGAV 57

Query: 119 VE 120
             
Sbjct: 58  TL 59


>gi|317152494|ref|YP_004120542.1| fumarate reductase/succinate dehydrogenase flavoprotein
           domain-containing protein [Desulfovibrio aespoeensis
           Aspo-2]
 gi|316942745|gb|ADU61796.1| fumarate reductase/succinate dehydrogenase flavoprotein domain
           protein [Desulfovibrio aespoeensis Aspo-2]
          Length = 676

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 23/69 (33%), Gaps = 9/69 (13%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
               + CI CK+C  +C   AI  +          R     I+   C  CG C   CP  
Sbjct: 577 WINPDICIGCKVCIGLCAYSAIEFDE---------RRQVSVINEAMCKGCGSCAGYCPSG 627

Query: 117 AIVEGPNFE 125
           A       E
Sbjct: 628 AAQIKHFNE 636



 Score = 37.8 bits (86), Expect = 0.59,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 26/88 (29%), Gaps = 17/88 (19%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-------IDMIKC-----I 104
                 C  C  C   CP +A +  +                      ID   C      
Sbjct: 238 YINASICTGCGACLEKCPTKAPSEFNEGLGTRKAIYRNSPQAVPNTPVIDGTICRKITKD 297

Query: 105 YCGLCQEACPVDAIVEGPNFEFATETRQ 132
            CGLCQ+ CP  AI          E+R+
Sbjct: 298 KCGLCQQICPTGAIDYTMQ-----ESRE 320



 Score = 34.3 bits (77), Expect = 6.2,   Method: Composition-based stats.
 Identities = 9/25 (36%), Positives = 10/25 (40%)

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDA 117
                I+   C  CG C E CP  A
Sbjct: 234 HKPRYINASICTGCGACLEKCPTKA 258


>gi|227823603|ref|YP_002827576.1| NAD-dependent formate dehydrogenase alpha subunit [Sinorhizobium
           fredii NGR234]
 gi|227342605|gb|ACP26823.1| NAD-dependent formate dehydrogenase alpha subunit [Sinorhizobium
           fredii NGR234]
          Length = 959

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 25/75 (33%), Gaps = 3/75 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     SG          +  D    +C+ CG C +
Sbjct: 170 YFTFDPAKCIVCSRCVRACEEVQGTFALTISGRGFDSKVSAGMNEDFVSSECVSCGACVQ 229

Query: 112 ACPVDAIVEGPNFEF 126
           ACP   + E    E 
Sbjct: 230 ACPTATLTEKSVIEI 244


>gi|260588480|ref|ZP_05854393.1| protein HymB [Blautia hansenii DSM 20583]
 gi|331082243|ref|ZP_08331370.1| hypothetical protein HMPREF0992_00294 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260540955|gb|EEX21524.1| protein HymB [Blautia hansenii DSM 20583]
 gi|330403037|gb|EGG82602.1| hypothetical protein HMPREF0992_00294 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 624

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 10/68 (14%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           A+R+Y    E C  C  C   CP  AIT                Y I+   CI C  C++
Sbjct: 564 AMRKYVINPEFCKGCGKCAKNCPVGAITGVRKEA----------YHINPNLCIKCDSCRD 613

Query: 112 ACPVDAIV 119
            C  DA+ 
Sbjct: 614 NCAFDAVY 621



 Score = 40.5 bits (93), Expect = 0.083,   Method: Composition-based stats.
 Identities = 12/40 (30%), Positives = 15/40 (37%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            I              +Y I+   C  CG C + CPV AI
Sbjct: 551 HIVEHKCAAKNCTAMRKYVINPEFCKGCGKCAKNCPVGAI 590


>gi|255659464|ref|ZP_05404873.1| ferredoxin-type protein [Mitsuokella multacida DSM 20544]
 gi|260848013|gb|EEX68020.1| ferredoxin-type protein [Mitsuokella multacida DSM 20544]
          Length = 494

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 26/88 (29%), Positives = 34/88 (38%), Gaps = 2/88 (2%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY-CGLCQEACPVDAI 118
              C +C LC + CP+  + + SGP            D     C+Y C LC  ACP  AI
Sbjct: 346 YTHCTSCHLCVSRCPSGVL-LSSGPENGALHLLQPHMDFSQGYCVYNCNLCSAACPTGAI 404

Query: 119 VEGPNFEFATETRQELYYDKERLLNNGD 146
                 E          YDK++ L   D
Sbjct: 405 RPLSLAEKQQTKIGLARYDKQQCLITRD 432



 Score = 40.5 bits (93), Expect = 0.088,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 13/66 (19%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +RCI C  CE  CP+  I  ++G              ID  +C+ C  C   CP DA+
Sbjct: 217 DADRCIHCGACERTCPSACIDAKTG-------------VIDSSRCVDCFDCLTLCPKDAL 263

Query: 119 VEGPNF 124
               + 
Sbjct: 264 HFSRSH 269



 Score = 40.1 bits (92), Expect = 0.12,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 23/65 (35%), Gaps = 8/65 (12%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD--AIVEG 121
           I C  C   C  QAIT+                 +D   CI CG C+  CP +  AI   
Sbjct: 434 IVCGNCARHCLTQAITMVEDRDG------RSYPVVDDAACIGCGSCEYHCPAEPSAIHII 487

Query: 122 PNFEF 126
              E 
Sbjct: 488 GIAEL 492



 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAI 118
            R  ID  +CI+CG C+  CP   I
Sbjct: 212 FRPVIDADRCIHCGACERTCPSACI 236


>gi|157374047|ref|YP_001472647.1| FAD linked oxidase domain-containing protein [Shewanella sediminis
           HAW-EB3]
 gi|157316421|gb|ABV35519.1| FAD linked oxidase domain protein [Shewanella sediminis HAW-EB3]
          Length = 942

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 9/83 (10%)

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139
            +         +     D  + KC+ CG C++ CP  A+   P    AT  R+       
Sbjct: 522 NDDPKIHVKDIKPCPVVDDFVDKCLECGFCEKTCPTSALNFTPRQRIATL-RE-----IA 575

Query: 140 RLLNNGDRWESEIVRNIVTDSPY 162
           RL  +GD    +    +   + Y
Sbjct: 576 RLEQSGD---QQAADEMRASAKY 595



 Score = 34.7 bits (78), Expect = 4.3,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 18/76 (23%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPR-----------------CHDGTRRTVRYDID 99
            +  ++C+ C  CE  CP  A+      R                   D  R + +YD+ 
Sbjct: 539 DDFVDKCLECGFCEKTCPTSALNFTPRQRIATLREIARLEQSGDQQAADEMRASAKYDVI 598

Query: 100 MIKCIYCGLCQEACPV 115
              C  C LC  ACPV
Sbjct: 599 -DTCAACQLCTIACPV 613


>gi|53713890|ref|YP_099882.1| ferredoxin [Bacteroides fragilis YCH46]
 gi|60682098|ref|YP_212242.1| ferredoxin [Bacteroides fragilis NCTC 9343]
 gi|253567118|ref|ZP_04844569.1| ferredoxin [Bacteroides sp. 3_2_5]
 gi|265764233|ref|ZP_06092801.1| ferredoxin [Bacteroides sp. 2_1_16]
 gi|52216755|dbj|BAD49348.1| Electron transport complex protein RnfB [Bacteroides fragilis
           YCH46]
 gi|60493532|emb|CAH08319.1| putative electron transport complex protein [Bacteroides fragilis
           NCTC 9343]
 gi|251944242|gb|EES84751.1| ferredoxin [Bacteroides sp. 3_2_5]
 gi|263256841|gb|EEZ28187.1| ferredoxin [Bacteroides sp. 2_1_16]
 gi|301163568|emb|CBW23119.1| putative electron transport complex protein [Bacteroides fragilis
           638R]
          Length = 290

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 8/81 (9%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------DMIKCIYCGLCQ 110
            EE+C AC  C   CP   I + +  +       +               + CI CG C 
Sbjct: 169 DEEKCTACGACVKACPKAIIELRAKGKKSRRVYVSCVNKDKGAVARKACTVSCIGCGKCV 228

Query: 111 EACPVDAIVEGPNFEFATETR 131
           + CP +AI    N  +    +
Sbjct: 229 KTCPFEAITLENNLAYIDYNK 249



 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 9/62 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C+ C  C A C   AI +                ++D  KC  CG C +ACP   I
Sbjct: 138 CSYGCLGCGDCVAACQFDAIHMNPETGLP---------EVDEEKCTACGACVKACPKAII 188

Query: 119 VE 120
             
Sbjct: 189 EL 190



 Score = 40.9 bits (94), Expect = 0.066,   Method: Composition-based stats.
 Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 11/62 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               CI C  C   CP +AIT+E+               ID  KC  C  C E CP   I
Sbjct: 217 CTVSCIGCGKCVKTCPFEAITLENNLAY-----------IDYNKCKSCRKCVEVCPQHTI 265

Query: 119 VE 120
           +E
Sbjct: 266 IE 267


>gi|307279197|ref|ZP_07560255.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX0860]
 gi|306504322|gb|EFM73534.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX0860]
          Length = 906

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 3/92 (3%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV 94
           F +G   P  + + +   +    E+CI C+ C  +C  +        +          + 
Sbjct: 133 FTEGKRMPCHQEDTSNPFFSYDPEKCIMCRRCARVCQLRQGRDVLSIANRGFETKMMPSY 192

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
               D   C  CG C  +CP  A+      E+
Sbjct: 193 GQAFDQSICESCGNCVSSCPTGALTAKDTKEY 224


>gi|326791181|ref|YP_004309002.1| electron transport complex, RnfABCDGE type subunit beta
           [Clostridium lentocellum DSM 5427]
 gi|326541945|gb|ADZ83804.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium
           lentocellum DSM 5427]
          Length = 285

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 11/56 (19%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           CI C +C   C   AIT+                 I+M KC+ CG C+  CP  AI
Sbjct: 217 CIGCGICVKQCEEGAITLVDN-----------HAVIEMTKCVSCGKCEAKCPTKAI 261



 Score = 39.3 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 5/71 (7%)

Query: 59  GEERCIACKLCEAICPAQA-----ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
             E+C+ C  C+  CP        ++      C    +         + CI CG+C + C
Sbjct: 168 HPEKCVGCGACKNACPRHIIEILPMSTTYHVNCISKDKGKEVKAACEVGCIGCGICVKQC 227

Query: 114 PVDAIVEGPNF 124
              AI    N 
Sbjct: 228 EEGAITLVDNH 238



 Score = 37.8 bits (86), Expect = 0.55,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 11/64 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C+    C+  C   AIT+E G              I   KC+ CG C+ ACP   I
Sbjct: 139 CAYGCLGYGSCQKACTFGAITMEEGLPI-----------IHPEKCVGCGACKNACPRHII 187

Query: 119 VEGP 122
              P
Sbjct: 188 EILP 191


>gi|326791176|ref|YP_004308997.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           lentocellum DSM 5427]
 gi|326541940|gb|ADZ83799.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium
           lentocellum DSM 5427]
          Length = 439

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/54 (25%), Positives = 19/54 (35%), Gaps = 1/54 (1%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
             C+ C  C  +CP   +   +  R           D   + CI CG C   CP
Sbjct: 367 THCMHCGKCVTVCPMH-LIPNTLHRHALHEHYDKFMDYYGMDCIECGCCSYTCP 419


>gi|284047868|ref|YP_003398207.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Acidaminococcus
           fermentans DSM 20731]
 gi|283952089|gb|ADB46892.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Acidaminococcus
           fermentans DSM 20731]
          Length = 1171

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 26/78 (33%), Gaps = 14/78 (17%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTRR---------TVRY 96
            A+       E CI C  C  +CP  AI     T E      +G +              
Sbjct: 676 IAINVPEWNIENCIQCNQCAIMCPHAAIRPFLLTDEEVKNAPEGLQTKPALGAKGLNFCI 735

Query: 97  DIDMIKCIYCGLCQEACP 114
            +  + C  C  C +ACP
Sbjct: 736 TVSPMDCQGCSNCVDACP 753


>gi|268611225|ref|ZP_06144952.1| heterodisulfide reductase, subunit a [Ruminococcus flavefaciens
           FD-1]
          Length = 663

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 2/66 (3%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGP--RCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            + E  C  C  CE +CP  AIT            T       ++   C  CG C  ACP
Sbjct: 581 HSNELMCNGCSSCEKVCPYGAITYVDKEFRMPDRTTAIRRVASVNPAVCQGCGACTVACP 640

Query: 115 VDAIVE 120
             A+  
Sbjct: 641 SGAMDL 646



 Score = 34.7 bits (78), Expect = 5.0,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 24/78 (30%), Gaps = 13/78 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGP--------RCHDGTRRTVRYDIDMIKCI-----Y 105
            E +C  C LC   CP + +  E                        ID   C+      
Sbjct: 239 DETKCTGCGLCTEKCPMKKVPNEFNMGLDNRTAIYIPFAQAVPKVATIDPNYCMMLKNGK 298

Query: 106 CGLCQEACPVDAIVEGPN 123
           CG+C + C V AI     
Sbjct: 299 CGVCSKVCSVGAIDYKQE 316


>gi|257468686|ref|ZP_05632780.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Fusobacterium
           ulcerans ATCC 49185]
 gi|317062941|ref|ZP_07927426.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
 gi|313688617|gb|EFS25452.1| predicted protein [Fusobacterium ulcerans ATCC 49185]
          Length = 56

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 11/64 (17%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            Y   ++ CI C  CE  CP  AI+     +                 C+ CG C   CP
Sbjct: 1   MYVIDKDACIGCGACEGTCPVGAISSTDDGKYGI-----------SDSCVDCGACAGGCP 49

Query: 115 VDAI 118
           V AI
Sbjct: 50  VSAI 53



 Score = 37.8 bits (86), Expect = 0.53,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 15/29 (51%)

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
            Y ID   CI CG C+  CPV AI    +
Sbjct: 1   MYVIDKDACIGCGACEGTCPVGAISSTDD 29


>gi|224370287|ref|YP_002604451.1| RnfC2 [Desulfobacterium autotrophicum HRM2]
 gi|223693004|gb|ACN16287.1| RnfC2 [Desulfobacterium autotrophicum HRM2]
          Length = 426

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 19/57 (33%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
              +  CI C  C  +CPA                     + D+  CI CG+C   C
Sbjct: 343 HVSDYPCINCGKCIRVCPANIPVNLLVRYLEASMYEEAADNFDLKSCIECGMCSYVC 399


>gi|169347288|ref|ZP_02866226.1| hypothetical protein CLOSPI_00003 [Clostridium spiroforme DSM 1552]
 gi|169293905|gb|EDS76038.1| hypothetical protein CLOSPI_00003 [Clostridium spiroforme DSM 1552]
          Length = 1172

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 24/87 (27%), Gaps = 22/87 (25%)

Query: 61  ERCIACKLCEAICPA------------------QAITIESGPRCHDGTRRTVRYDIDMIK 102
           E CI C  C  +CP                           P   +      R  +    
Sbjct: 688 ENCIQCNNCVMVCPHATVRAFLIDGEEMADLPEDISDDVLKPIGKNVDGLVYRIQVSPDN 747

Query: 103 CIYCGLCQEACP----VDAIVEGPNFE 125
           C+ CGLC   CP      A+   P  E
Sbjct: 748 CVGCGLCVTECPGKKGEKALEMVPVKE 774


>gi|167830015|ref|ZP_02461486.1| formate dehydrogenase, alpha subunit [Burkholderia pseudomallei 9]
 gi|226197869|ref|ZP_03793443.1| formate dehydrogenase, NAD-dependent, alpha subunit [Burkholderia
           pseudomallei Pakistan 9]
 gi|225930057|gb|EEH26070.1| formate dehydrogenase, NAD-dependent, alpha subunit [Burkholderia
           pseudomallei Pakistan 9]
          Length = 984

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 25/85 (29%), Gaps = 10/85 (11%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     +          +        +C+ CG C  
Sbjct: 187 YFSYDPSKCIVCNRCVRACEETQGTFALTIASRGFESRVAASAGEAFMDSECVSCGACVA 246

Query: 112 ACPVDAIVE-------GPNFEFATE 129
           ACP   ++E        P  E  T 
Sbjct: 247 ACPTATLIEKSVARLGQPEHEIVTT 271


>gi|149193853|ref|ZP_01870951.1| carbon monoxide-induced hydrogenase, iron-sulfur cluster-binding
           subunit [Caminibacter mediatlanticus TB-2]
 gi|149135806|gb|EDM24284.1| carbon monoxide-induced hydrogenase, iron-sulfur cluster-binding
           subunit [Caminibacter mediatlanticus TB-2]
          Length = 140

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 7/66 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C AC  CE +CP+ AI I               +      C +C  C+  CP  AI
Sbjct: 10  DANLCTACATCEEVCPSGAIHITEDESS-------FIHTTWYNTCCFCANCEFFCPTGAI 62

Query: 119 VEGPNF 124
               ++
Sbjct: 63  KLTNDY 68


>gi|83589245|ref|YP_429254.1| 2-oxoacid:acceptor oxidoreductase, delta subunit,
           pyruvate/2-ketoisovalerate [Moorella thermoacetica ATCC
           39073]
 gi|83572159|gb|ABC18711.1| 2-oxoacid:acceptor oxidoreductase, delta subunit,
           pyruvate/2-ketoisovalerate [Moorella thermoacetica ATCC
           39073]
          Length = 89

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 7/75 (9%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G   + R     ++C  C  C   CP   I ++          +     +++  C  CG+
Sbjct: 18  GSWRIMRPEVDHDQCTRCGTCAKYCPLDIIDVDKE-------SKVQSVTMNLDYCKGCGI 70

Query: 109 CQEACPVDAIVEGPN 123
           C   CP   I     
Sbjct: 71  CANVCPRKCIKMVSE 85


>gi|39995208|ref|NP_951159.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Geobacter
           sulfurreducens PCA]
 gi|39981970|gb|AAR33432.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Geobacter
           sulfurreducens PCA]
 gi|298504213|gb|ADI82936.1| pyruvate:ferredoxin/flavodoxin oxidoreductase [Geobacter
           sulfurreducens KN400]
          Length = 1195

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/98 (18%), Positives = 30/98 (30%), Gaps = 24/98 (24%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES---------- 82
           T    FEK + +               E+ CI C +C  +CP   I +++          
Sbjct: 674 TATSQFEKRNIAVEIPVW--------DEQLCIQCGICSFVCPHATIRMKAYDASALAGAP 725

Query: 83  ------GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                   +  +   +     +    C  CG C   CP
Sbjct: 726 AAFKSVDCKIPEFKGQKFTIQVAPEDCTGCGACVHNCP 763



 Score = 35.1 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 8/18 (44%), Positives = 9/18 (50%)

Query: 103 CIYCGLCQEACPVDAIVE 120
           CI CG+C   CP   I  
Sbjct: 696 CIQCGICSFVCPHATIRM 713


>gi|147668873|ref|YP_001213691.1| hydrogenase, Fe-only [Dehalococcoides sp. BAV1]
 gi|146269821|gb|ABQ16813.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit
           [Dehalococcoides sp. BAV1]
          Length = 573

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 23/65 (35%), Gaps = 3/65 (4%)

Query: 59  GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115
              +CIAC  C  +C   Q +           T      D  M    C  CG C   CPV
Sbjct: 143 DPNKCIACGRCVRVCHDIQTVNAIGFINKGPDTMVATSMDRGMGNVACANCGQCILVCPV 202

Query: 116 DAIVE 120
            AI E
Sbjct: 203 GAIKE 207


>gi|238796067|ref|ZP_04639578.1| hypothetical protein ymoll0001_4030 [Yersinia mollaretii ATCC
           43969]
 gi|238720012|gb|EEQ11817.1| hypothetical protein ymoll0001_4030 [Yersinia mollaretii ATCC
           43969]
          Length = 693

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 7/79 (8%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI-KCIYC------GLCQEA 112
           +E+CI CK C   CP   +T+ +        R    Y      KC  C        C + 
Sbjct: 96  QEKCIGCKTCMIACPFGMMTVVTETVQPASHRLADAYQRTEAQKCDLCIDQPDGPACIKT 155

Query: 113 CPVDAIVEGPNFEFATETR 131
           CP  A+         ++ R
Sbjct: 156 CPTQALTLVDQHYLLSQQR 174



 Score = 35.8 bits (81), Expect = 1.8,   Method: Composition-based stats.
 Identities = 18/91 (19%), Positives = 24/91 (26%), Gaps = 20/91 (21%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEE-------RCIACK--LCEAICPAQAITIESGPRCH 87
           P         F+G                    C  C+   C + CP  AI   +     
Sbjct: 35  PEYFTPRLKVFKGRQGFNDPHGVNGTLSATAVFCHHCEDAPCASTCPNGAIVEMNN---- 90

Query: 88  DGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                     +   KCI C  C  ACP   +
Sbjct: 91  -------SIQVIQEKCIGCKTCMIACPFGMM 114


>gi|226947086|ref|YP_002802159.1| RnfABCDGE type electron transport complex subunit B [Azotobacter
           vinelandii DJ]
 gi|17865301|gb|AAL47173.1|AF450501_3 RnfB [Azotobacter vinelandii]
 gi|226722013|gb|ACO81184.1| Electron transport complex, RnfABCDGE type, B subunit [Azotobacter
           vinelandii DJ]
          Length = 174

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 10/73 (13%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            +CI C  C   CP  AI   SG            + +    C  CG C++ACP D ++ 
Sbjct: 107 SQCIGCTRCYRACPTDAIVGASGQ----------VHVVLEDACTGCGKCRDACPEDCVLL 156

Query: 121 GPNFEFATETRQE 133
            P  +     R +
Sbjct: 157 IPQEQTLDTWRWD 169


>gi|325663172|ref|ZP_08151622.1| hypothetical protein HMPREF0490_02363 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|331086762|ref|ZP_08335839.1| hypothetical protein HMPREF0987_02142 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|325470626|gb|EGC73856.1| hypothetical protein HMPREF0490_02363 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|330409928|gb|EGG89363.1| hypothetical protein HMPREF0987_02142 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 56

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 11/64 (17%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + C++C  CEA CP  AI+  +             Y+I+   C+ CG C   CP
Sbjct: 1   MAHVISDECVSCGACEAECPVGAISQGAD-----------HYEINADACVDCGACAAQCP 49

Query: 115 VDAI 118
             AI
Sbjct: 50  TGAI 53


>gi|325185181|emb|CCA19671.1| hypothetical protein ALNC14_058140 [Albugo laibachii Nc14]
          Length = 627

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/56 (28%), Positives = 23/56 (41%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           K C   C      +  G  C + T ++    I    CI CG+C + CP +AI    
Sbjct: 19  KKCRQECKKSCPVVRMGNLCIEVTPKSKLAFISEDLCIGCGICVKKCPFEAINIIN 74


>gi|289432125|ref|YP_003461998.1| hydrogenase, Fe-only [Dehalococcoides sp. GT]
 gi|288945845|gb|ADC73542.1| hydrogenase, Fe-only [Dehalococcoides sp. GT]
          Length = 573

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 23/65 (35%), Gaps = 3/65 (4%)

Query: 59  GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115
              +CIAC  C  +C   Q +           T      D  M    C  CG C   CPV
Sbjct: 143 DPNKCIACGRCVRVCHDIQTVNAIGFINKGPDTMVATSMDRGMGNVACANCGQCILVCPV 202

Query: 116 DAIVE 120
            AI E
Sbjct: 203 GAIKE 207


>gi|226290257|gb|EEH45741.1| translation initiation factor RLI1 [Paracoccidioides brasiliensis
           Pb18]
          Length = 620

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 27/76 (35%), Gaps = 4/76 (5%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              RC   K C   C      + +G  C + T  +    I    CI CG+C + CP  AI
Sbjct: 28  DPRRCKP-KKCRQECKKSCPVVRTGKLCIEVTPESKIAFISERLCIGCGICPKKCPFGAI 86

Query: 119 VEGP---NFEFATETR 131
                  N E     R
Sbjct: 87  HIINLPTNLETQVTHR 102


>gi|188997098|ref|YP_001931349.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932165|gb|ACD66795.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 363

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 24/142 (16%), Positives = 43/142 (30%), Gaps = 25/142 (17%)

Query: 2   RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61
           + ++  VS   + E     +  L       T   +  EK   S                 
Sbjct: 206 KPYKNIVSEKVIPEKRKILYTTLSKI--GPTDKCFEVEKIEFSSD---------KWIDNS 254

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           +C  C +C  +CP  A+T +            ++       CI C +C + CP   I   
Sbjct: 255 KCTNCSICYNVCPTGALTPDDSK---------LKVLFSPTLCIKCRICHDVCPEKCIHLE 305

Query: 122 PNFEFATETRQELYYDKERLLN 143
                     ++    K ++L 
Sbjct: 306 EKLYL-----EDFISGKYKVLA 322


>gi|168333731|ref|ZP_02691984.1| nitroreductase family protein [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 255

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 11/72 (15%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                E +CI C  C+  CP+  I I++                +   CI CG CQ  CP
Sbjct: 1   MINIDENKCIGCSKCQKSCPSGLIEIQNKKAIIS----------NTGACILCGHCQAVCP 50

Query: 115 VDAIV-EGPNFE 125
             AI   G ++E
Sbjct: 51  SSAISLLGIDYE 62


>gi|162452617|ref|YP_001614984.1| hypothetical protein sce4341 [Sorangium cellulosum 'So ce 56']
 gi|161163199|emb|CAN94504.1| hypothetical protein sce4341 [Sorangium cellulosum 'So ce 56']
          Length = 785

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 26/130 (20%), Positives = 34/130 (26%), Gaps = 15/130 (11%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
               P           G+         +  C  C  C   CP + I +   P        
Sbjct: 376 HCESPACMIECPTGAIGKDTGGEVFIRDALCTGCGACAKACPWENIAMAPRPAAAPRPGG 435

Query: 93  TVRYDIDMIKCIYCG-----LCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDR 147
               DI  +KC  C       C +ACP  +I      E   + R          L  G R
Sbjct: 436 AGFADI-AVKCDLCRDYDGPACVKACPTGSIFRVNPAEEIADVRD---------LLGGAR 485

Query: 148 WESEIVRNIV 157
            E E      
Sbjct: 486 REQERAAAPR 495



 Score = 42.0 bits (97), Expect = 0.026,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 22/63 (34%), Gaps = 12/63 (19%)

Query: 60  EERCIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
              C  C+   C   CP  AI  ++G              I    C  CG C +ACP + 
Sbjct: 371 PNSCQHCESPACMIECPTGAIGKDTGGEVF----------IRDALCTGCGACAKACPWEN 420

Query: 118 IVE 120
           I  
Sbjct: 421 IAM 423


>gi|134277066|ref|ZP_01763781.1| formate dehydrogenase, alpha subunit [Burkholderia pseudomallei
           305]
 gi|134250716|gb|EBA50795.1| formate dehydrogenase, alpha subunit [Burkholderia pseudomallei
           305]
          Length = 984

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 25/85 (29%), Gaps = 10/85 (11%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     +          +        +C+ CG C  
Sbjct: 187 YFSYDPSKCIVCNRCVRACEETQGTFALTIASRGFESRVAASAGEAFMDSECVSCGACVA 246

Query: 112 ACPVDAIVE-------GPNFEFATE 129
           ACP   ++E        P  E  T 
Sbjct: 247 ACPTATLIEKSVARLGQPEHEIVTT 271


>gi|73748099|ref|YP_307338.1| putative [Fe] hydrogenase, large subunit HymC [Dehalococcoides sp.
           CBDB1]
 gi|73659815|emb|CAI82422.1| putative [Fe] hydrogenase, large subunit HymC [Dehalococcoides sp.
           CBDB1]
          Length = 573

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 23/65 (35%), Gaps = 3/65 (4%)

Query: 59  GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115
              +CIAC  C  +C   Q +           T      D  M    C  CG C   CPV
Sbjct: 143 DPNKCIACGRCVRVCHDIQTVNAIGFINKGPDTMVATSMDRGMGNVACANCGQCILVCPV 202

Query: 116 DAIVE 120
            AI E
Sbjct: 203 GAIKE 207


>gi|86147961|ref|ZP_01066265.1| electron transport complex protein RnfC [Vibrio sp. MED222]
 gi|85834286|gb|EAQ52440.1| electron transport complex protein RnfC [Vibrio sp. MED222]
          Length = 902

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 37/105 (35%), Gaps = 9/105 (8%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            CI C  C   CPA  +  +               ++++  CI CG C   CP   I   
Sbjct: 377 ECIRCSACAEACPAS-LLPQQLQWHAKANELDKCEELNIKDCIECGACAFVCP-SEIPLV 434

Query: 122 PNFEFAT---ETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
             +  A    +TR++     ER      R+E E    +  D   R
Sbjct: 435 QYYRQAKAEIKTRKDEAAAAER---AKIRFE-EKNARMERDKAER 475


>gi|85704751|ref|ZP_01035852.1| dihydropyrimidine dehydrogenase [Roseovarius sp. 217]
 gi|85670569|gb|EAQ25429.1| dihydropyrimidine dehydrogenase [Roseovarius sp. 217]
          Length = 434

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 20/63 (31%), Gaps = 8/63 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP-VDA 117
            ++ CI C  C A C       E              + +   +C+ C LC   CP    
Sbjct: 343 NQDDCINCGRCYAAC-------EDTSHQAIAMSEDRVFTVKDDECVACNLCVNVCPIEGC 395

Query: 118 IVE 120
           I  
Sbjct: 396 ITM 398


>gi|332795922|ref|YP_004457422.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Acidianus hospitalis W1]
 gi|332693657|gb|AEE93124.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Acidianus hospitalis W1]
          Length = 419

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 7/100 (7%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           N  + C  C  C   CP +++               V  +    KC+ C  C   C  DA
Sbjct: 279 NMNDNCTLCGACIRKCPTRSLKYNIKDN-------NVFIEFTPSKCVGCNKCVNVCEEDA 331

Query: 118 IVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIV 157
           I    ++ +++      Y   E  +    +          
Sbjct: 332 ITVNKSYNYSSLHEDTFYITAEDEVVRCKKCGRPFDNKKK 371



 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 11/56 (19%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           C  C   CP +A++I  G              ID  KC YCGLC  +CPV AI   
Sbjct: 115 CNQCVTSCPQKAMSIVEGKVV-----------IDENKCTYCGLCAASCPVGAINLS 159


>gi|325958349|ref|YP_004289815.1| ABC transporter-like protein [Methanobacterium sp. AL-21]
 gi|325329781|gb|ADZ08843.1| ABC transporter related protein [Methanobacterium sp. AL-21]
          Length = 591

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 1/67 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +RC   K C  +C      +           +T +  +    C  CG+C   CP  AI
Sbjct: 8   DHDRCQP-KKCNYVCIEYCPGVRMEEDTITIDAKTKKPILSEELCSGCGICTNRCPFKAI 66

Query: 119 VEGPNFE 125
                 E
Sbjct: 67  NIINLPE 73


>gi|307107097|gb|EFN55341.1| hypothetical protein CHLNCDRAFT_134349 [Chlorella variabilis]
          Length = 1242

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/115 (21%), Positives = 36/115 (31%), Gaps = 22/115 (19%)

Query: 29  KAKTTINYP---FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI----- 80
           K   ++  P   F  G+T+   R    +    N    C  C +C  ICP  A+       
Sbjct: 694 KLPVSVFTPGGFFPPGTTAVEKRSIAQVVPAWN-SANCTQCNICSFICPHAAVRPALATP 752

Query: 81  -----------ESGPRCHDGTRRTVRYDID--MIKCIYCGLCQEACPVDAIVEGP 122
                          +      +  +Y I      C  C LC  ACP  A+   P
Sbjct: 753 EELAGAPAGFATVPIKGGGPALKGFQYRIQVSPTDCTGCELCVHACPDYALTSTP 807


>gi|266619301|ref|ZP_06112236.1| putative pyruvate formate-lyase activating enzyme [Clostridium
           hathewayi DSM 13479]
 gi|288869169|gb|EFD01468.1| putative pyruvate formate-lyase activating enzyme [Clostridium
           hathewayi DSM 13479]
          Length = 289

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 4/63 (6%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
             P  ++ C AC +C   CPA A++IE G       R       +   CI C  C   CP
Sbjct: 41  HNPETQQLCRACGICAGQCPAGALSIEEGGGESSEKRIVW----NEKLCIQCDNCIRVCP 96

Query: 115 VDA 117
             A
Sbjct: 97  YFA 99


>gi|255527702|ref|ZP_05394559.1| dihydroorotate dehydrogenase family protein [Clostridium
           carboxidivorans P7]
 gi|296185037|ref|ZP_06853447.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
 gi|255508615|gb|EET84998.1| dihydroorotate dehydrogenase family protein [Clostridium
           carboxidivorans P7]
 gi|296049871|gb|EFG89295.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7]
          Length = 360

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 12/65 (18%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                 +E+C +C  C   C   AITI                 I+  KC  CGLC   C
Sbjct: 306 IFPKINKEKCNSCGKCVKSCAYSAITISDKAN------------INTTKCFGCGLCLTRC 353

Query: 114 PVDAI 118
           P  AI
Sbjct: 354 PETAI 358


>gi|322418741|ref|YP_004197964.1| electron transfer flavoprotein alpha/beta-subunit [Geobacter sp.
           M18]
 gi|320125128|gb|ADW12688.1| Electron transfer flavoprotein alpha/beta-subunit [Geobacter sp.
           M18]
          Length = 448

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 29/113 (25%), Positives = 40/113 (35%), Gaps = 30/113 (26%)

Query: 48  RGEHALRRYPNGEERCIACK-LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
           RG+  L      E +CIAC   C++ CP   I +                 I + KCI C
Sbjct: 11  RGKVRLI-----EGKCIACGARCQSSCPVDGILMSDAGEPE----------IVLSKCIGC 55

Query: 107 GLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159
             C +ACP  A+              E++Y KE L         + V     D
Sbjct: 56  LKCVKACPGSAL--------------EIFYSKEELEILAQLAGQQDVAEEDAD 94


>gi|167720689|ref|ZP_02403925.1| formate dehydrogenase, alpha subunit [Burkholderia pseudomallei
           DM98]
          Length = 978

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 25/85 (29%), Gaps = 10/85 (11%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     +          +        +C+ CG C  
Sbjct: 181 YFSYDPSKCIVCNRCVRACEETQGTFALTIASRGFESRVAASAGEAFMDSECVSCGACVA 240

Query: 112 ACPVDAIVE-------GPNFEFATE 129
           ACP   ++E        P  E  T 
Sbjct: 241 ACPTATLIEKSVARLGQPEHEIVTT 265


>gi|126699996|ref|YP_001088893.1| indolepyruvate oxidoreductase subunit [Clostridium difficile 630]
 gi|255101532|ref|ZP_05330509.1| indolepyruvate oxidoreductase subunit [Clostridium difficile
           QCD-63q42]
 gi|115251433|emb|CAJ69266.1| Indole pyruvate ferredoxin/flavodoxin oxidoreductase [Clostridium
           difficile]
          Length = 595

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 10/60 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++CI CKLC          +++G       +     +ID  +C+ CG+C + CP  AI
Sbjct: 541 DHDKCIGCKLC----------LKTGCPALSFDKENKLSNIDRNQCVGCGVCAQVCPKQAI 590


>gi|126178283|ref|YP_001046248.1| glutamate synthase (NADPH) [Methanoculleus marisnigri JR1]
 gi|125861077|gb|ABN56266.1| glutamate synthase (NADPH) GltB2 subunit [Methanoculleus marisnigri
           JR1]
          Length = 505

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 23/79 (29%), Gaps = 11/79 (13%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
            S  F       R     E+C+ C  C   C       +             R  I+   
Sbjct: 1   MSSNFGSMPLRYRISIDREQCMECGRCVENCSYGVFRWDGN-----------RILINSRN 49

Query: 103 CIYCGLCQEACPVDAIVEG 121
           C  C  C   CP DAI+  
Sbjct: 50  CTACHRCLTYCPRDAIMLQ 68


>gi|21227071|ref|NP_632993.1| coenzyme F420 hydrogenase subunit beta [Methanosarcina mazei Go1]
 gi|20905396|gb|AAM30665.1| Coenzyme F420 hydrogenase beta subunit [Methanosarcina mazei Go1]
          Length = 344

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 5/76 (6%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           EK   S  +     L+        C  C  C A+CPA A+  E+G        ++  Y  
Sbjct: 3   EKKPISKSYLD---LKSKVWDTGLCSGCGACIAVCPADALYFETG--GDSTHPKSNNYCK 57

Query: 99  DMIKCIYCGLCQEACP 114
             +  + CG C E CP
Sbjct: 58  AAVDDVPCGACYEVCP 73


>gi|115526636|ref|YP_783547.1| formate dehydrogenase, alpha subunit [Rhodopseudomonas palustris
           BisA53]
 gi|115520583|gb|ABJ08567.1| formate dehydrogenase, alpha subunit [Rhodopseudomonas palustris
           BisA53]
          Length = 948

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 3/77 (3%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     +G          ++      +C+ CG C +
Sbjct: 159 YFTYDPSKCIVCSRCVRACEDVQGTFALTIAGRGFDSVVSAGMQESFLGSECVSCGACVQ 218

Query: 112 ACPVDAIVEGPNFEFAT 128
           ACP   + E    E  T
Sbjct: 219 ACPTATLNEKSIIEIGT 235


>gi|254195604|ref|ZP_04902031.1| formate dehydrogenase, alpha subunit [Burkholderia pseudomallei
           S13]
 gi|169652350|gb|EDS85043.1| formate dehydrogenase, alpha subunit [Burkholderia pseudomallei
           S13]
          Length = 984

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 25/85 (29%), Gaps = 10/85 (11%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     +          +        +C+ CG C  
Sbjct: 187 YFSYDPSKCIVCNRCVRACEETQGTFALTIASRGFESRVAASAGEAFMDSECVSCGACVA 246

Query: 112 ACPVDAIVE-------GPNFEFATE 129
           ACP   ++E        P  E  T 
Sbjct: 247 ACPTATLIEKSVARLGQPEHEIVTT 271


>gi|53720140|ref|YP_109126.1| NAD-dependent formate dehydrogenase subunit alpha [Burkholderia
           pseudomallei K96243]
 gi|76810667|ref|YP_334390.1| NAD-dependent formate dehydrogenase subunit alpha [Burkholderia
           pseudomallei 1710b]
 gi|167739673|ref|ZP_02412447.1| NAD-dependent formate dehydrogenase alpha subunit [Burkholderia
           pseudomallei 14]
 gi|167816881|ref|ZP_02448561.1| NAD-dependent formate dehydrogenase alpha subunit [Burkholderia
           pseudomallei 91]
 gi|167912020|ref|ZP_02499111.1| NAD-dependent formate dehydrogenase alpha subunit [Burkholderia
           pseudomallei 112]
 gi|254192308|ref|ZP_04898797.1| formate dehydrogenase, alpha subunit [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254258592|ref|ZP_04949646.1| formate dehydrogenase, NAD-dependent, alpha subunit [Burkholderia
           pseudomallei 1710a]
 gi|254295605|ref|ZP_04963063.1| formate dehydrogenase, alpha subunit [Burkholderia pseudomallei
           406e]
 gi|52210554|emb|CAH36537.1| NAD-dependent formate dehydrogenase alpha subunit [Burkholderia
           pseudomallei K96243]
 gi|76580120|gb|ABA49595.1| NAD-dependent formate dehydrogenase alpha subunit [Burkholderia
           pseudomallei 1710b]
 gi|157805558|gb|EDO82728.1| formate dehydrogenase, alpha subunit [Burkholderia pseudomallei
           406e]
 gi|157987503|gb|EDO95279.1| formate dehydrogenase, alpha subunit [Burkholderia pseudomallei
           Pasteur 52237]
 gi|254217281|gb|EET06665.1| formate dehydrogenase, NAD-dependent, alpha subunit [Burkholderia
           pseudomallei 1710a]
          Length = 984

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 25/85 (29%), Gaps = 10/85 (11%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     +          +        +C+ CG C  
Sbjct: 187 YFSYDPSKCIVCNRCVRACEETQGTFALTIASRGFESRVAASAGEAFMDSECVSCGACVA 246

Query: 112 ACPVDAIVE-------GPNFEFATE 129
           ACP   ++E        P  E  T 
Sbjct: 247 ACPTATLIEKSVARLGQPEHEIVTT 271


>gi|124267483|ref|YP_001021487.1| putative electron transport-like protein [Methylibium
           petroleiphilum PM1]
 gi|124260258|gb|ABM95252.1| putative electron transport-related protein [Methylibium
           petroleiphilum PM1]
          Length = 228

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C LC   CP   I   +             + +   +C  C LC   CPVD I
Sbjct: 94  DETWCIGCTLCIKACPVDCIVGAAKQ----------MHTVVESQCTGCELCIPVCPVDCI 143

Query: 119 VEGP 122
               
Sbjct: 144 SLED 147



 Score = 33.9 bits (76), Expect = 6.8,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C LC +ACPVD I
Sbjct: 93  IDETWCIGCTLCIKACPVDCI 113


>gi|330446093|ref|ZP_08309745.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328490284|dbj|GAA04242.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 1195

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 22/83 (26%), Gaps = 16/83 (19%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQ--------------AITIESGPRCHDGTRRTVR 95
             A+       E CI C  C  ICP                A                  
Sbjct: 681 RQAVNVPSWDPELCIQCGNCSFICPHATIRSKIYNKDELAAAPENFKYTDVSARGFPDTA 740

Query: 96  YDI--DMIKCIYCGLCQEACPVD 116
           Y I      C+ C LC +ACP  
Sbjct: 741 YTIQVYAEDCMGCTLCVDACPAH 763



 Score = 35.1 bits (79), Expect = 3.3,   Method: Composition-based stats.
 Identities = 11/50 (22%), Positives = 16/50 (32%), Gaps = 13/50 (26%)

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWE 149
              CI CG C   CP   I                 Y+K+ L    + ++
Sbjct: 691 PELCIQCGNCSFICPHATIRSK-------------IYNKDELAAAPENFK 727


>gi|312794532|ref|YP_004027455.1| glutamate synthase (NADPH) [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312181672|gb|ADQ41842.1| Glutamate synthase (NADPH) [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 502

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 9/64 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E +CI CK+C   C  +    +             R   D  KC+ C  C   CP  A+
Sbjct: 14  DETKCIRCKVCVRQCANEVHEYDEEED---------RVVADSSKCVACHRCVVMCPTKAL 64

Query: 119 VEGP 122
               
Sbjct: 65  TIKK 68


>gi|312621296|ref|YP_004022909.1| glutamate synthase (NADPH) [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312201763|gb|ADQ45090.1| Glutamate synthase (NADPH) [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 502

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 9/64 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E +CI CK+C   C  +    +             R   D  KC+ C  C   CP  A+
Sbjct: 14  DETKCIRCKVCVRQCANEVHEYDEEED---------RVVADSSKCVACHRCVVMCPTKAL 64

Query: 119 VEGP 122
               
Sbjct: 65  TIKK 68


>gi|317052305|ref|YP_004113421.1| 4Fe-4S ferredoxin, iron-sulfur-binding protein [Desulfurispirillum
           indicum S5]
 gi|316947389|gb|ADU66865.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Desulfurispirillum
           indicum S5]
          Length = 416

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 24/93 (25%), Positives = 33/93 (35%), Gaps = 16/93 (17%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80
           F+ L    +   T   P+ +  T+        L+ +P    RCI C  C   CP      
Sbjct: 170 FISLSLLRRTFCTQICPYGRFQTTLLTPATLTLQYHPAHAHRCIRCNACVRACPTGIDIR 229

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           E              Y I   +CI CG C +AC
Sbjct: 230 EG-------------YQI---ECINCGNCLDAC 246



 Score = 33.9 bits (76), Expect = 7.4,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 13/45 (28%), Gaps = 1/45 (2%)

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDI-DMIKCIYCGLCQEACPV 115
            C                   T++Y      +CI C  C  ACP 
Sbjct: 180 FCTQICPYGRFQTTLLTPATLTLQYHPAHAHRCIRCNACVRACPT 224


>gi|282165442|ref|YP_003357827.1| tungsten-containing formylmethanofuran dehydrogenase subunit G
           [Methanocella paludicola SANAE]
 gi|282157756|dbj|BAI62844.1| tungsten-containing formylmethanofuran dehydrogenase subunit G
           [Methanocella paludicola SANAE]
          Length = 80

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 19/67 (28%), Gaps = 4/67 (5%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRT----VRYDIDMIKCIYCGLCQEACPVD 116
             C  C  C   CP  A+ +                     ID   C  CG+C   CP  
Sbjct: 14  RICTGCNNCVVACPVNALELTVVNPVTRKKTYNVLNGKAVVIDEDVCNGCGICLMVCPQR 73

Query: 117 AIVEGPN 123
           AI     
Sbjct: 74  AITLTTE 80


>gi|260893193|ref|YP_003239290.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ammonifex
           degensii KC4]
 gi|260865334|gb|ACX52440.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ammonifex
           degensii KC4]
          Length = 652

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 26/96 (27%), Gaps = 12/96 (12%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAI-------TIESGPRCHDGTRRTVRYDI 98
            +R     +       +C  C  C   CP +         +               +  I
Sbjct: 227 NYRVIIRQKARYVDHTKCTGCGTCWEKCPVKVPDELNFRLSTRPAIYLPFPQAVPNKPVI 286

Query: 99  DMIKCI-----YCGLCQEACPVDAIVEGPNFEFATE 129
           D   C       CG+CQ+ CP  AI          E
Sbjct: 287 DARHCRQLTKGKCGVCQKVCPAGAIDYTQQDSLHEE 322



 Score = 35.5 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 7/57 (12%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
              +  C  C  C+ +CP QAI + +            R  +    C  CG C  AC
Sbjct: 579 WVNQALCTGCLHCQVVCPYQAIEVVTEG-------GRRRARVKEELCQGCGSCTVAC 628


>gi|227484615|ref|ZP_03914931.1| NADH dehydrogenase (ubiquinone), RnfC subunit [Anaerococcus
           lactolyticus ATCC 51172]
 gi|227237335|gb|EEI87350.1| NADH dehydrogenase (ubiquinone), RnfC subunit [Anaerococcus
           lactolyticus ATCC 51172]
          Length = 451

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 1/59 (1%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           +      CI C  C ++CP   +         DG R     +   + CI CG C   CP
Sbjct: 373 FIEDPTPCIRCGRCVSVCPVFLLPNYIHKHALDG-RFEKADEEGALDCIECGSCSFVCP 430



 Score = 35.5 bits (80), Expect = 2.9,   Method: Composition-based stats.
 Identities = 9/21 (42%), Positives = 10/21 (47%)

Query: 96  YDIDMIKCIYCGLCQEACPVD 116
           +  D   CI CG C   CPV 
Sbjct: 373 FIEDPTPCIRCGRCVSVCPVF 393


>gi|225572231|ref|ZP_03781095.1| hypothetical protein RUMHYD_00525 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040293|gb|EEG50539.1| hypothetical protein RUMHYD_00525 [Blautia hydrogenotrophica DSM
           10507]
          Length = 263

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 11/62 (17%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           N E  CI CK CE  CP++AI +++               ID  KC  CG C+E CP   
Sbjct: 213 NCEVGCIGCKKCEKTCPSEAIKVDN-----------FCAHIDYEKCTNCGACKEVCPRHI 261

Query: 118 IV 119
           I 
Sbjct: 262 IF 263



 Score = 33.9 bits (76), Expect = 6.6,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 5/65 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGT-----RRTVRYDIDMIKCIYCGLCQEAC 113
            +E C AC  C A CP   I +   P+          +         + CI C  C++ C
Sbjct: 169 DKEACKACGKCVAKCPKHLIELVPYPQEVFVHCSSNAKGKAVTANCEVGCIGCKKCEKTC 228

Query: 114 PVDAI 118
           P +AI
Sbjct: 229 PSEAI 233


>gi|224023565|ref|ZP_03641931.1| hypothetical protein BACCOPRO_00268 [Bacteroides coprophilus DSM
           18228]
 gi|224016787|gb|EEF74799.1| hypothetical protein BACCOPRO_00268 [Bacteroides coprophilus DSM
           18228]
          Length = 261

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 9/66 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + C AC  C  +CP  AI + +            + +    +CI C  C + CP  A 
Sbjct: 187 CNDLCYACGNCIEVCPTHAIYLSADG---------SQIETIAERCIRCCACVKECPTGAR 237

Query: 119 VEGPNF 124
           +    F
Sbjct: 238 IFDSPF 243


>gi|222530321|ref|YP_002574203.1| glutamate synthase [Caldicellulosiruptor bescii DSM 6725]
 gi|312126412|ref|YP_003991286.1| glutamate synthase (NADPH) [Caldicellulosiruptor hydrothermalis
           108]
 gi|312876679|ref|ZP_07736659.1| Glutamate synthase (NADPH) [Caldicellulosiruptor lactoaceticus 6A]
 gi|222457168|gb|ACM61430.1| Glutamate synthase (NADPH) [Caldicellulosiruptor bescii DSM 6725]
 gi|311776431|gb|ADQ05917.1| Glutamate synthase (NADPH) [Caldicellulosiruptor hydrothermalis
           108]
 gi|311796519|gb|EFR12868.1| Glutamate synthase (NADPH) [Caldicellulosiruptor lactoaceticus 6A]
          Length = 502

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 9/64 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E +CI CK+C   C  +    +             R   D  KC+ C  C   CP  A+
Sbjct: 14  DETKCIRCKVCVRQCANEVHEYDEEED---------RVVADSSKCVACHRCVVMCPTKAL 64

Query: 119 VEGP 122
               
Sbjct: 65  TIKK 68


>gi|170758534|ref|YP_001786732.1| iron-sulfur cluster-binding protein [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169405523|gb|ACA53934.1| iron-sulfur cluster-binding protein [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 425

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 3/69 (4%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              ++RC+ C  C  +CP +A               +   ++    C+ CG+C + C  +
Sbjct: 288 NINKDRCVGCGKCTKVCPMEA---IKLKETSLEKHSSKIAELSEDLCLGCGVCVKNCKTN 344

Query: 117 AIVEGPNFE 125
           AI      E
Sbjct: 345 AIKLVRRKE 353



 Score = 40.9 bits (94), Expect = 0.064,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 6/64 (9%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           PN    C  C  CEA   A+                +   +I+  +C+ CG C + CP++
Sbjct: 254 PNFICNCCKC-HCEAFVSAK-----KFGFLVPVNTTSYLPNINKDRCVGCGKCTKVCPME 307

Query: 117 AIVE 120
           AI  
Sbjct: 308 AIKL 311


>gi|134046216|ref|YP_001097701.1| cobyrinic acid a,c-diamide synthase [Methanococcus maripaludis C5]
 gi|132663841|gb|ABO35487.1| Cobyrinic acid a,c-diamide synthase [Methanococcus maripaludis C5]
          Length = 282

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 15/65 (23%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E+CI C+ C   C   AIT E                ++ +KC  CGLC+  CP DA+
Sbjct: 64  DPEKCIKCEKCLQ-CRFGAITPELE--------------VNPLKCEGCGLCKYVCPADAV 108

Query: 119 VEGPN 123
               N
Sbjct: 109 KMVDN 113


>gi|88603409|ref|YP_503587.1| cobyrinic acid a,c-diamide synthase [Methanospirillum hungatei
           JF-1]
 gi|88188871|gb|ABD41868.1| Cobyrinic acid a,c-diamide synthase [Methanospirillum hungatei
           JF-1]
          Length = 283

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/80 (23%), Positives = 27/80 (33%), Gaps = 12/80 (15%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
           P     H +    N   +C+ C  C   C   A+T+              R       C 
Sbjct: 51  PEIHPVHVIIPKVNE-SQCMHCGACGEFCRFGALTVLKD-----------RVLFFPQLCH 98

Query: 105 YCGLCQEACPVDAIVEGPNF 124
            CG C   CP +A+ E P +
Sbjct: 99  SCGGCFRVCPHEALEENPAY 118


>gi|170076828|ref|YP_001733466.1| bidirectional hydrogenase complex protein HoxU [Synechococcus sp.
           PCC 7002]
 gi|22652022|gb|AAN03566.1|AF381045_3 hydrogenase small diaphorase subunit U [Synechococcus sp. PCC 7002]
 gi|169884497|gb|ACA98210.1| hydrogenase small diaphorase subunit U [Synechococcus sp. PCC 7002]
          Length = 238

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 4/70 (5%)

Query: 54  RRYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLC 109
           +++     RCI C  C  +C     A   +   R  +    +        +  C  CG C
Sbjct: 139 KQFGIDHNRCILCTRCVRVCDEIEGAHVWDVSNRGGESKIVSGLNQPWGAVDACTSCGKC 198

Query: 110 QEACPVDAIV 119
            +ACP  +I 
Sbjct: 199 VDACPTGSIF 208


>gi|254195369|ref|ZP_04901797.1| iron-sulfur cluster-binding protein [Burkholderia pseudomallei S13]
 gi|169652116|gb|EDS84809.1| iron-sulfur cluster-binding protein [Burkholderia pseudomallei S13]
          Length = 477

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 27/105 (25%), Gaps = 10/105 (9%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-QAIT 79
           +       +    ++ P E             L        RCI C  C   CP   A+ 
Sbjct: 271 YTTFSTGPRRGDDLDGPQEYHVVLVDNGRTRMLAGEFRDMLRCIRCGACMNHCPVYGAVG 330

Query: 80  IESGPRCHDG---------TRRTVRYDIDMIKCIYCGLCQEACPV 115
             +    + G          +           C   G C E CPV
Sbjct: 331 GHAYGWVYPGPMGAVLTPLMQGIEHDTDLPNACTLNGRCAEVCPV 375



 Score = 35.1 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNF 124
           M++CI CG C   CPV   V G  +
Sbjct: 310 MLRCIRCGACMNHCPVYGAVGGHAY 334


>gi|293376715|ref|ZP_06622938.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Turicibacter
           sanguinis PC909]
 gi|325845196|ref|ZP_08168504.1| pyruvate synthase [Turicibacter sp. HGF1]
 gi|292644672|gb|EFF62759.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Turicibacter
           sanguinis PC909]
 gi|325488792|gb|EGC91193.1| pyruvate synthase [Turicibacter sp. HGF1]
          Length = 1186

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 26/122 (21%), Positives = 38/122 (31%), Gaps = 28/122 (22%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIE-----SGPRCHDGTRRTV-------- 94
           RG           E CI C  C  +CP   I           +  +GTR           
Sbjct: 677 RGIANFVPKWIE-ENCIQCNQCAFVCPHAVIRPFLVTEAEKEQAPEGTRTLKAIGKGLDG 735

Query: 95  ---RYDIDMIKCIYCGLCQEACPV----DAIVEGP---NFEFATETRQELYYD----KER 140
                 +  + C  C +C   CP      A+V  P     E     R + +++    K+ 
Sbjct: 736 LEYCIQVSTLDCTGCEVCAHICPGKKGNKALVMVPISEELEAGQAERSDYFFNKVTYKDD 795

Query: 141 LL 142
           LL
Sbjct: 796 LL 797


>gi|257064349|ref|YP_003144021.1| hydrogenase, Fe-only [Slackia heliotrinireducens DSM 20476]
 gi|256792002|gb|ACV22672.1| hydrogenase, Fe-only [Slackia heliotrinireducens DSM 20476]
          Length = 569

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 24/68 (35%), Gaps = 3/68 (4%)

Query: 59  GEERCIACKLCEAIC---PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
              +CI C  C A C      ++   SGP  H          ID   C  CG C   CP 
Sbjct: 138 DASKCIKCMRCVAECSKVQYCSVWEHSGPGPHMNVFVKDGLAIDAAGCALCGQCITHCPT 197

Query: 116 DAIVEGPN 123
            A+    +
Sbjct: 198 GALTARDD 205


>gi|237733893|ref|ZP_04564374.1| 4Fe-4S ferredoxin [Mollicutes bacterium D7]
 gi|229382974|gb|EEO33065.1| 4Fe-4S ferredoxin [Coprobacillus sp. D7]
          Length = 251

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 32/100 (32%), Gaps = 12/100 (12%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
             +YF + K T    F  G  +  F       +  + E+ CI C  C   CP + I++  
Sbjct: 145 AGKYFLETKPTFIGRFNSGIVNRLFYPMFVRAKGFHVEDTCIGCGQCIHACPLKNISLVD 204

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                          I    C  C  C   CP  AI    
Sbjct: 205 SRP------------IWDKHCTQCMACISICPKAAIEYKN 232


>gi|283796651|ref|ZP_06345804.1| conserved domain protein [Clostridium sp. M62/1]
 gi|291076074|gb|EFE13438.1| conserved domain protein [Clostridium sp. M62/1]
 gi|295092473|emb|CBK78580.1| Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits
           [Clostridium cf. saccharolyticum K10]
 gi|295115344|emb|CBL36191.1| Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits
           [butyrate-producing bacterium SM4/1]
          Length = 56

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 11/60 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C++C  C   CP  AI+   G            Y+ID   CI CG C   CP  AI E
Sbjct: 7   DTCVSCGACAGGCPVGAISEGDGK-----------YEIDAAACIDCGACAGTCPTGAIEE 55


>gi|255281565|ref|ZP_05346120.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bryantella
           formatexigens DSM 14469]
 gi|255268053|gb|EET61258.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bryantella
           formatexigens DSM 14469]
          Length = 1179

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 25/81 (30%), Gaps = 15/81 (18%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQ-----AITIESGPRCHDGTR---------RT 93
           RG        N  + CI C  C  +CP       A+T E      +G +           
Sbjct: 679 RGIAVDIPVWN-PDNCIQCNRCSYVCPHAVIRPIALTEEEAAAAPEGMKTLPMTGMAGYK 737

Query: 94  VRYDIDMIKCIYCGLCQEACP 114
               +    C  CG C   CP
Sbjct: 738 FAMVVSAYDCTGCGSCANVCP 758


>gi|240146037|ref|ZP_04744638.1| RnfB/polyferredoxin [Roseburia intestinalis L1-82]
 gi|257201853|gb|EEV00138.1| RnfB/polyferredoxin [Roseburia intestinalis L1-82]
 gi|291536104|emb|CBL09216.1| electron transport complex, RnfABCDGE type, B subunit [Roseburia
           intestinalis M50/1]
 gi|291539036|emb|CBL12147.1| electron transport complex, RnfABCDGE type, B subunit [Roseburia
           intestinalis XB6B4]
          Length = 263

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 27/83 (32%), Gaps = 11/83 (13%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P+           +            CI C LCE  CP  A+ +               
Sbjct: 191 VPYSAKHIVQCSSKDVGKNVMKACSVGCIGCHLCEKNCPKDAVHVIDN-----------V 239

Query: 96  YDIDMIKCIYCGLCQEACPVDAI 118
             ID  KC+ CG+C + CP   I
Sbjct: 240 AYIDQEKCVGCGICAQKCPKKII 262



 Score = 35.1 bits (79), Expect = 3.0,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 5/70 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV-----RYDIDMIKCIYCGLCQEAC 113
            +E C AC  C A CP   I +      H     +            + CI C LC++ C
Sbjct: 169 DKEVCKACGKCVAACPKHLIELVPYSAKHIVQCSSKDVGKNVMKACSVGCIGCHLCEKNC 228

Query: 114 PVDAIVEGPN 123
           P DA+    N
Sbjct: 229 PKDAVHVIDN 238



 Score = 34.7 bits (78), Expect = 4.1,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 20/64 (31%), Gaps = 11/64 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C+    C   CP  AI I  G              +D   C  CG C  ACP   I
Sbjct: 140 CNYGCLGFGSCVKACPFDAIHIVDGIAL-----------VDKEVCKACGKCVAACPKHLI 188

Query: 119 VEGP 122
              P
Sbjct: 189 ELVP 192


>gi|209170690|gb|ACI42788.1| [FeFe]-hydrogenase [Clostridium tyrobutyricum]
          Length = 577

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 3/70 (4%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTR-RTVRYDIDMIK--CIYCGLCQEACPV 115
              +C+ C  C   C   + T        DG R   +  D+   K  C+ CG C  ACPV
Sbjct: 141 DRTKCVLCGRCVVACKTHSGTSVMKFIKKDGKRAVGIENDLCFDKSNCLLCGQCVIACPV 200

Query: 116 DAIVEGPNFE 125
            A+ E P+ +
Sbjct: 201 AALTEKPHID 210


>gi|189424812|ref|YP_001951989.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
           lovleyi SZ]
 gi|189421071|gb|ACD95469.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
           lovleyi SZ]
          Length = 55

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 11/65 (16%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + C  C  CE  CP  AI+ +   R            ID   CI CG C + CP
Sbjct: 1   MAHTITDDCTNCAACEDSCPVNAISEQGSKRV-----------IDADTCIDCGACVDTCP 49

Query: 115 VDAIV 119
           V+AI 
Sbjct: 50  VNAIH 54


>gi|166032145|ref|ZP_02234974.1| hypothetical protein DORFOR_01848 [Dorea formicigenerans ATCC
           27755]
 gi|166027868|gb|EDR46625.1| hypothetical protein DORFOR_01848 [Dorea formicigenerans ATCC
           27755]
          Length = 249

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 11/81 (13%)

Query: 42  STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
             +P F  E       +  + CI C LCE  CPA+AI I+ G                  
Sbjct: 162 EMAPVFNREWRKTAAYHVSDECIGCGLCERKCPAKAIEIQDGKPVWIK-----------E 210

Query: 102 KCIYCGLCQEACPVDAIVEGP 122
            C  C  C   CPV+AI  G 
Sbjct: 211 DCYLCMACLNYCPVEAIDYGK 231



 Score = 37.4 bits (85), Expect = 0.71,   Method: Composition-based stats.
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            +    A+  T E  P  +   R+T  Y +   +CI CGLC+  CP  AI    
Sbjct: 150 VKMGEDAKTRTYEMAPVFNREWRKTAAYHVS-DECIGCGLCERKCPAKAIEIQD 202


>gi|270307598|ref|YP_003329656.1| [Fe] hydrogenase, Hym C subunit [Dehalococcoides sp. VS]
 gi|270153490|gb|ACZ61328.1| [Fe] hydrogenase, Hym C subunit [Dehalococcoides sp. VS]
          Length = 573

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 23/65 (35%), Gaps = 3/65 (4%)

Query: 59  GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115
              +CIAC  C  +C   Q +           T      D  M    C  CG C   CPV
Sbjct: 143 DPNKCIACGRCVRVCHDIQTVNAIGFINKGPDTMVATSMDRGMGNVACANCGQCILVCPV 202

Query: 116 DAIVE 120
            AI E
Sbjct: 203 GAIKE 207


>gi|147668790|ref|YP_001213608.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit
           [Dehalococcoides sp. BAV1]
 gi|146269738|gb|ABQ16730.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Dehalococcoides sp. BAV1]
          Length = 428

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           ++ C  C +C+AICPA AI ++  P      +      ++   C  CG C + CP   I 
Sbjct: 16  QQLCCGCGICQAICPAGAIKMQIAPD-----KGIYLPWLNTSLCRSCGKCLKVCPGTGID 70

Query: 120 E 120
            
Sbjct: 71  L 71


>gi|148977529|ref|ZP_01814108.1| NADPH-dependent glutamate synthase beta chain [Vibrionales
           bacterium SWAT-3]
 gi|145963180|gb|EDK28447.1| NADPH-dependent glutamate synthase beta chain [Vibrionales
           bacterium SWAT-3]
          Length = 1361

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 23/71 (32%), Gaps = 11/71 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM-----------IKCIYCG 107
              RCI+C  C   C  Q +            +   R +                C+ CG
Sbjct: 589 DANRCISCGQCIQACREQNVHGVLSFMNQADGKPASRPECRPNFGANQTLMGDSNCVQCG 648

Query: 108 LCQEACPVDAI 118
            C +ACP  A+
Sbjct: 649 SCIQACPTGAM 659



 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 4/69 (5%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           K ++ P  R      +   G+  C+ C  C   CP  A+      +  D         I 
Sbjct: 621 KPASRPECRPNFGANQTLMGDSNCVQCGSCIQACPTGAMVDARDRKQGDTDVLKKVDTI- 679

Query: 100 MIKCIYCGL 108
              C YCG+
Sbjct: 680 ---CTYCGV 685


>gi|134046563|ref|YP_001098048.1| formate dehydrogenase subunit beta (F420) [Methanococcus
           maripaludis C5]
 gi|132664188|gb|ABO35834.1| formate dehydrogenase, beta subunit (F420) [Methanococcus
           maripaludis C5]
          Length = 375

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 7/96 (7%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIAC------KLCEAICPAQAITIESGPRCHDGTR 91
           F+K     ++        Y +   +C  C        C+    A+    +          
Sbjct: 258 FQKEHLDEKYPSPEKWNEYWSRCIKCYGCRDVCPICFCKECALAEDYLDKGTIPPDPIMF 317

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127
           + +R       CI CG C++ CPV+ I     +  A
Sbjct: 318 QGIRLSHMSFSCINCGQCEDVCPVE-IPLAKIYHRA 352


>gi|488597|gb|AAA85785.1| hydrogenase-1 [Clostridium saccharobutylicum]
          Length = 574

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 27/113 (23%), Positives = 40/113 (35%), Gaps = 5/113 (4%)

Query: 24  LRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG 83
           L+   K K   N PF     S     +   +       +C+ C  CEA C  +  T    
Sbjct: 110 LKLVIKTKAKANKPFVVEDKSQYI--DIRSKSIVIDRTKCVLCGRCEAACKTKTGTGAIS 167

Query: 84  PRCHDGTRRTVRY---DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133
               +  R          D   C+ CG C  ACPV A+ E  + +   E  ++
Sbjct: 168 ICKSESGRIVQATGGKCFDDTNCLLCGQCVAACPVGALTEKTHVDRVKEALED 220


>gi|57235003|ref|YP_180897.1| [Fe] hydrogenase, large subunit HymC, putative [Dehalococcoides
           ethenogenes 195]
 gi|57225451|gb|AAW40508.1| [Fe] hydrogenase, large subunit HymC, putative [Dehalococcoides
           ethenogenes 195]
          Length = 573

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 23/65 (35%), Gaps = 3/65 (4%)

Query: 59  GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115
              +CIAC  C  +C   Q +           T      D  M    C  CG C   CPV
Sbjct: 143 DPNKCIACGRCVRVCHDIQTVNAIGFINKGPDTMVATSMDRGMGNVACANCGQCILVCPV 202

Query: 116 DAIVE 120
            AI E
Sbjct: 203 GAIKE 207


>gi|83590042|ref|YP_430051.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica ATCC
            39073]
 gi|83572956|gb|ABC19508.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Moorella
            thermoacetica ATCC 39073]
          Length = 1487

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 10/63 (15%)

Query: 59   GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E +C AC  C  +CP     I                 I+ ++C+ CG C   CP  AI
Sbjct: 1417 DENKCAACLTCVRVCPFNVPRINERNVAE----------INAVQCMGCGTCAGECPAKAI 1466

Query: 119  VEG 121
               
Sbjct: 1467 QLQ 1469


>gi|14590828|ref|NP_142900.1| hypothetical protein PH0983 [Pyrococcus horikoshii OT3]
 gi|3257397|dbj|BAA30080.1| 300aa long hypothetical protein [Pyrococcus horikoshii OT3]
          Length = 300

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 10/69 (14%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R     +      E CI C LC+  CP + I ++              Y ++ + C  C 
Sbjct: 59  REHIGAKIARINPESCIRCGLCQMRCPYECIYVDEEGN----------YVVNELTCEGCN 108

Query: 108 LCQEACPVD 116
           +C   CPV 
Sbjct: 109 VCGLVCPVP 117



 Score = 37.4 bits (85), Expect = 0.77,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 14/42 (33%)

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +               I+   CI CGLCQ  CP + I     
Sbjct: 53  TEWEIEREHIGAKIARINPESCIRCGLCQMRCPYECIYVDEE 94


>gi|86131474|ref|ZP_01050072.1| iron-sulfur cluster-binding protein [Dokdonia donghaensis MED134]
 gi|85817919|gb|EAQ39087.1| iron-sulfur cluster-binding protein [Dokdonia donghaensis MED134]
          Length = 543

 Score = 43.2 bits (100), Expect = 0.013,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 10/67 (14%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R +   R   NG  +CI+C  C   C           +           +I    C+ CG
Sbjct: 449 RFKSRFRITTNG-GQCISCGNCSTYCEQGIDVRAYAQKGE---------NIVRSSCVGCG 498

Query: 108 LCQEACP 114
           +C   CP
Sbjct: 499 ICSAVCP 505


>gi|323704242|ref|ZP_08115821.1| protein of unknown function DUF362 [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323536308|gb|EGB26080.1| protein of unknown function DUF362 [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 378

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/118 (17%), Positives = 35/118 (29%), Gaps = 26/118 (22%)

Query: 1   MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           M I    +    +      F +                +      R+   H         
Sbjct: 274 MNIEDIKIDDFDIPTL-RGFSVT--------------EKIPKFLVRYLDRHVKPYPVFDH 318

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + C +C +C   CP +A+ +                 +D+  CI C  CQE CP  A+
Sbjct: 319 DACKSCGICVTNCPPKALKMVESKPI-----------VDLKACIRCFCCQELCPHKAV 365


>gi|299146847|ref|ZP_07039915.1| putative iron-sulfur cluster-binding protein [Bacteroides sp.
           3_1_23]
 gi|298517338|gb|EFI41219.1| putative iron-sulfur cluster-binding protein [Bacteroides sp.
           3_1_23]
          Length = 312

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 26/129 (20%), Positives = 34/129 (26%), Gaps = 35/129 (27%)

Query: 29  KAKTTINYPFEKGSTSPRFRGEHAL----------RRYPNGEERCIACKLCEAICPAQAI 78
           +         E+      F     L            Y    + CI C  C  +CP    
Sbjct: 187 RRHWHEPVSEEERQMHAGFMARSGLDPEVGFLKRSENYFVVTKNCIDCGACTDVCPRGNY 246

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138
              S      G             C +C  C + CP  AI    N E             
Sbjct: 247 EFTSNGIKMQG------------DCDFCFACIQNCPQKAIQFKKNDE------------- 281

Query: 139 ERLLNNGDR 147
           + LL NG+R
Sbjct: 282 DPLLANGER 290


>gi|282163379|ref|YP_003355764.1| glutamate synthase large subunit domain 2 [Methanocella paludicola
           SANAE]
 gi|282155693|dbj|BAI60781.1| glutamate synthase large subunit domain 2 [Methanocella paludicola
           SANAE]
          Length = 508

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 22/65 (33%), Gaps = 9/65 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            + +C+ CK C   C   A+T                   D  KC+ C  C   CP  AI
Sbjct: 19  NDRKCVRCKKCTTECGFGAVTYSKE---------FDCIIADDSKCVACLRCVTMCPKRAI 69

Query: 119 VEGPN 123
               N
Sbjct: 70  RIEHN 74


>gi|237738128|ref|ZP_04568609.1| pyruvate oxidoreductase [Fusobacterium mortiferum ATCC 9817]
 gi|229420008|gb|EEO35055.1| pyruvate oxidoreductase [Fusobacterium mortiferum ATCC 9817]
          Length = 100

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 10/63 (15%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E C  C LC   CP  AI ++ G R             DM  C  CG+C +ACP +AI  
Sbjct: 48  ENCKQCLLCVPCCPDSAIPVKEGKRLEF----------DMDHCKGCGVCSKACPFNAIEM 97

Query: 121 GPN 123
              
Sbjct: 98  VKE 100


>gi|206561322|ref|YP_002232087.1| NAD-dependent formate dehydrogenase subunit alpha [Burkholderia
           cenocepacia J2315]
 gi|198037364|emb|CAR53297.1| NAD-dependent formate dehydrogenase alpha subunit [Burkholderia
           cenocepacia J2315]
          Length = 983

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 20/69 (28%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     +                   +C+ CG C  
Sbjct: 187 YFTYDPSKCIVCNRCVRACEETQGTFALTIAARGFESRVAAGESESFMASECVSCGACVA 246

Query: 112 ACPVDAIVE 120
           ACP   + E
Sbjct: 247 ACPTATLQE 255


>gi|134046283|ref|YP_001097768.1| putative ATPase RIL [Methanococcus maripaludis C5]
 gi|132663908|gb|ABO35554.1| ABC transporter related protein [Methanococcus maripaludis C5]
          Length = 590

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 1/73 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +RC   + C   C      +              +  I    C  CG+C + CP +AI
Sbjct: 8   DYDRCQP-RRCSMECMKYCPGVRMEEETIVMDENLGKPIISEELCSGCGICTKRCPFEAI 66

Query: 119 VEGPNFEFATETR 131
                 E  T+ R
Sbjct: 67  KIIGLPEELTDDR 79


>gi|126178994|ref|YP_001046959.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit
           [Methanoculleus marisnigri JR1]
 gi|125861788|gb|ABN56977.1| formate dehydrogenase, beta subunit (F420) [Methanoculleus
           marisnigri JR1]
          Length = 412

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 9/75 (12%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR---------CHDGTRRTVRYDID 99
           G+  L++      RCI C  C   CP       S  +                 +R+   
Sbjct: 280 GKERLQKIMEDASRCIKCYACIENCPICYCEECSTKKDYLVPPGVLPVPFMFHLIRFAHV 339

Query: 100 MIKCIYCGLCQEACP 114
              C+ CG C+E CP
Sbjct: 340 ADSCVNCGQCEENCP 354


>gi|160878703|ref|YP_001557671.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Clostridium phytofermentans ISDg]
 gi|160427369|gb|ABX40932.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium
           phytofermentans ISDg]
          Length = 697

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 6/52 (11%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
            C  C  C+ +CP  AI +                     KCI+CGLC+  C
Sbjct: 317 ECCGCYACKEVCPTGAIQMLMDREGFYYPHVNK------EKCIHCGLCERVC 362



 Score = 40.5 bits (93), Expect = 0.079,   Method: Composition-based stats.
 Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 10/46 (21%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY---DKER 140
           I   +C  C  C+E CP  AI            R+  YY   +KE+
Sbjct: 313 ITRGECCGCYACKEVCPTGAIQMLM-------DREGFYYPHVNKEK 351


>gi|53724804|ref|YP_102259.1| formate dehydrogenase subunit alpha [Burkholderia mallei ATCC
           23344]
 gi|121599913|ref|YP_993895.1| formate dehydrogenase, alpha subunit [Burkholderia mallei SAVP1]
 gi|124385511|ref|YP_001026956.1| formate dehydrogenase, alpha subunit [Burkholderia mallei NCTC
           10229]
 gi|126448429|ref|YP_001079756.1| formate dehydrogenase, alpha subunit [Burkholderia mallei NCTC
           10247]
 gi|238561694|ref|ZP_00441684.2| formate dehydrogenase, alpha subunit [Burkholderia mallei GB8 horse
           4]
 gi|251766976|ref|ZP_02265541.2| formate dehydrogenase, alpha subunit [Burkholderia mallei PRL-20]
 gi|254203944|ref|ZP_04910304.1| formate dehydrogenase, alpha subunit [Burkholderia mallei FMH]
 gi|254208924|ref|ZP_04915272.1| formate dehydrogenase, alpha subunit [Burkholderia mallei JHU]
 gi|254360021|ref|ZP_04976291.1| formate dehydrogenase, alpha subunit [Burkholderia mallei
           2002721280]
 gi|52428227|gb|AAU48820.1| formate dehydrogenase, alpha subunit [Burkholderia mallei ATCC
           23344]
 gi|121228723|gb|ABM51241.1| formate dehydrogenase, alpha subunit [Burkholderia mallei SAVP1]
 gi|124293531|gb|ABN02800.1| putative sulfite reductase [NADPH] flavoprotein, alpha-component
           [Burkholderia mallei NCTC 10229]
 gi|126241299|gb|ABO04392.1| putative sulfite reductase [NADPH] flavoprotein, alpha-component
           [Burkholderia mallei NCTC 10247]
 gi|147745456|gb|EDK52536.1| formate dehydrogenase, alpha subunit [Burkholderia mallei FMH]
 gi|147750800|gb|EDK57869.1| formate dehydrogenase, alpha subunit [Burkholderia mallei JHU]
 gi|148029261|gb|EDK87166.1| formate dehydrogenase, alpha subunit [Burkholderia mallei
           2002721280]
 gi|238524153|gb|EEP87588.1| formate dehydrogenase, alpha subunit [Burkholderia mallei GB8 horse
           4]
 gi|243064205|gb|EES46391.1| formate dehydrogenase, alpha subunit [Burkholderia mallei PRL-20]
          Length = 984

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 25/85 (29%), Gaps = 10/85 (11%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     +          +        +C+ CG C  
Sbjct: 187 YFSYDPSKCIVCNRCVRACEETQGTFALTIASRGFESRVAASAGEAFMDSECVSCGACVA 246

Query: 112 ACPVDAIVE-------GPNFEFATE 129
           ACP   ++E        P  E  T 
Sbjct: 247 ACPTATLIEKSVARLGQPEHEIVTT 271


>gi|115522044|ref|YP_778955.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Rhodopseudomonas palustris BisA53]
 gi|115515991|gb|ABJ03975.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Rhodopseudomonas palustris BisA53]
          Length = 485

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 30/104 (28%), Gaps = 16/104 (15%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
            + Y +++G      +    LR        CI C  C A+CP                  
Sbjct: 242 NVTYKYDRGEQRTSLKKAEQLRAQGEKVGDCIDCNQCVAVCPTG---------------- 285

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
               D   + CI CGLC +AC       G              +
Sbjct: 286 IDIRDGSQLDCIQCGLCIDACDTVMKKIGRETRLIGYDNDINIH 329


>gi|107022109|ref|YP_620436.1| formate dehydrogenase, alpha subunit [Burkholderia cenocepacia AU
           1054]
 gi|116689054|ref|YP_834677.1| formate dehydrogenase, alpha subunit [Burkholderia cenocepacia
           HI2424]
 gi|105892298|gb|ABF75463.1| formate dehydrogenase alpha subunit [Burkholderia cenocepacia AU
           1054]
 gi|116647143|gb|ABK07784.1| formate dehydrogenase alpha subunit [Burkholderia cenocepacia
           HI2424]
          Length = 983

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 20/69 (28%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     +                   +C+ CG C  
Sbjct: 187 YFTYDPSKCIVCNRCVRACEETQGTFALTIAARGFESRVAAGESESFMASECVSCGACVA 246

Query: 112 ACPVDAIVE 120
           ACP   + E
Sbjct: 247 ACPTATLQE 255


>gi|219666778|ref|YP_002457213.1| reductive dehalogenase [Desulfitobacterium hafniense DCB-2]
 gi|19421902|gb|AAL87790.1|AF403184_15 putative reductive dehalogenase [Desulfitobacterium hafniense
           DCB-2]
 gi|219537038|gb|ACL18777.1| reductive dehalogenase [Desulfitobacterium hafniense DCB-2]
          Length = 458

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 7/62 (11%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIKCIYCGLCQEA 112
           ++ C  CK C   CP++AIT ++    ++G        ++   + +   +   CG C + 
Sbjct: 337 QDFCRVCKKCADNCPSEAITHDTDMVEYNGYLRWNSDMKKCAEFRLTNSEGSSCGRCMKV 396

Query: 113 CP 114
           CP
Sbjct: 397 CP 398


>gi|320162471|ref|YP_004175696.1| ferredoxin [Anaerolinea thermophila UNI-1]
 gi|319996325|dbj|BAJ65096.1| ferredoxin [Anaerolinea thermophila UNI-1]
          Length = 57

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 11/58 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           + CI C  CE  CP  AI ++              Y +D  KC  CG C + CP  AI
Sbjct: 8   DDCIQCGACETECPEGAIYMDGE-----------YYVVDEAKCKDCGSCVDVCPTGAI 54



 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 11/38 (28%), Positives = 16/38 (42%)

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           + + I    CI CG C+  CP  AI     +    E +
Sbjct: 1   MTHVISKDDCIQCGACETECPEGAIYMDGEYYVVDEAK 38


>gi|310778429|ref|YP_003966762.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Ilyobacter polytropus DSM 2926]
 gi|309747752|gb|ADO82414.1| NAD(P)-dependent iron-only hydrogenase diaphorase component
           flavoprotein [Ilyobacter polytropus DSM 2926]
          Length = 595

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 10/65 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            +  ++CI C  C  +CP   I            +   ++ ID   CI CG C   C   
Sbjct: 541 YSINDKCIGCTACARVCPVNCIAG----------KVKEKHVIDQSVCIKCGACYSTCKFG 590

Query: 117 AIVEG 121
           AI  G
Sbjct: 591 AIDRG 595



 Score = 37.0 bits (84), Expect = 0.94,   Method: Composition-based stats.
 Identities = 12/45 (26%), Positives = 16/45 (35%)

Query: 74  PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + +      RC  G    +       KCI C  C   CPV+ I
Sbjct: 518 WDEYVAHVVDKRCPAGACTDLLQYSINDKCIGCTACARVCPVNCI 562


>gi|255975951|ref|ZP_05426537.1| formate dehydrogenase [Enterococcus faecalis T2]
 gi|255968823|gb|EET99445.1| formate dehydrogenase [Enterococcus faecalis T2]
          Length = 895

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 3/92 (3%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV 94
           F +G   P  + + +   +    E+CI C+ C  +C  +        +          + 
Sbjct: 122 FTEGKRMPCHQEDTSNPFFSYDPEKCIMCRRCARVCQLRQGRDVLSIANRGFETKMMPSY 181

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126
               D   C  CG C  +CP  A+      E+
Sbjct: 182 GQAFDQSICESCGNCVSSCPTGALTAKDTKEY 213


>gi|255011331|ref|ZP_05283457.1| putative dehydrogenase [Bacteroides fragilis 3_1_12]
          Length = 598

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 6/74 (8%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                 + +C  C  C   C   AIT ++                   KC+ C LC++ C
Sbjct: 1   MINIIDKTKCCGCNACGDACAHGAITFKTDIEGFWYPTVNK------DKCVNCELCEKVC 54

Query: 114 PVDAIVEGPNFEFA 127
           P+  I E    + +
Sbjct: 55  PIINIKELKKNDLS 68


>gi|166368538|ref|YP_001660811.1| bidirectional hydrogenase complex protein HoxU [Microcystis
           aeruginosa NIES-843]
 gi|166090911|dbj|BAG05619.1| diaphorase subunit of the bidirectional hydrogenase [Microcystis
           aeruginosa NIES-843]
          Length = 238

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 21/68 (30%), Gaps = 4/68 (5%)

Query: 56  YPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLCQE 111
           +     RC+ C  C  +C     A   +   R                +  C  CG C  
Sbjct: 141 FGIDHNRCVLCTRCVRVCDEIEGAHVWDLAYRGEKDKIIAGMDQPWGSVSACTSCGKCVA 200

Query: 112 ACPVDAIV 119
           ACP  AI 
Sbjct: 201 ACPTGAIF 208


>gi|164687856|ref|ZP_02211884.1| hypothetical protein CLOBAR_01500 [Clostridium bartlettii DSM
           16795]
 gi|164603131|gb|EDQ96596.1| hypothetical protein CLOBAR_01500 [Clostridium bartlettii DSM
           16795]
          Length = 333

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 11/56 (19%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           CI CK CE  CP  AIT+E+               ID  KC+ C +C + CP   I
Sbjct: 214 CIGCKKCEKSCPVGAITVENNLA-----------TIDYSKCVGCKVCADVCPKKVI 258



 Score = 40.5 bits (93), Expect = 0.083,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 8/60 (13%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              +C+ CK+C  +CP + I  +   R         +  ID  KCI C  C   CP  AI
Sbjct: 239 DYSKCVGCKVCADVCPKKVIKADLSDR--------RKVSIDESKCIGCTACARTCPFGAI 290



 Score = 39.3 bits (90), Expect = 0.20,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 5/78 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQEAC 113
            E++C+ C  C   CP   I  +   +          +     D     CI C  C+++C
Sbjct: 165 DEDKCVLCGKCIDTCPKGLIQKKPAKQEVVVECSSKDKGKDVKDKCSAGCIGCKKCEKSC 224

Query: 114 PVDAIVEGPNFEFATETR 131
           PV AI    N      ++
Sbjct: 225 PVGAITVENNLATIDYSK 242



 Score = 37.4 bits (85), Expect = 0.61,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 10/69 (14%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           R+    E +CI C  C   CP  AI  E              + +D+ KC  C LC + C
Sbjct: 266 RKVSIDESKCIGCTACARTCPFGAIEGEKKQP----------HKVDLEKCKGCHLCMKKC 315

Query: 114 PVDAIVEGP 122
             DAI    
Sbjct: 316 KKDAIKLVD 324


>gi|150003986|ref|YP_001298730.1| pyruvate-formate lyase-activating enzyme [Bacteroides vulgatus ATCC
           8482]
 gi|149932410|gb|ABR39108.1| pyruvate-formate lyase-activating enzyme [Bacteroides vulgatus ATCC
           8482]
          Length = 302

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 15/80 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ++C+ C  C  +CP  A+T+       D             KC+ CG C E CP  AI  
Sbjct: 51  KKCLGCGTCLKVCPNGALTLTPEGIITDKQ-----------KCVLCGRCAEECPAMAIEI 99

Query: 121 GPNFEFATETRQELYYDKER 140
                    T + L ++ E+
Sbjct: 100 SG----TEYTAEYLMHEIEK 115



 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 15/39 (38%)

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
              +G R          KC+ CG C + CP  A+   P 
Sbjct: 35  HNPEGIRNGKDKLYTAKKCLGCGTCLKVCPNGALTLTPE 73


>gi|91201028|emb|CAJ74086.1| similar to Na(+)-translocating NADH-quinone reductase subunit A
           [Candidatus Kuenenia stuttgartiensis]
          Length = 348

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 3/53 (5%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVR-YDIDMIKCIYCGLCQEACP 114
           C+ C  C+ ICP            + G ++ VR YDI   KCI CGLC  ACP
Sbjct: 278 CVYCNFCDDICPVNLEPALYHQAYNRGEKQKVRSYDI--EKCIECGLCSFACP 328


>gi|2463276|emb|CAA74096.1| F420-reducing hydrogenase isoenzyme I gamma subunit [Methanosarcina
           barkeri]
          Length = 259

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 11/62 (17%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L      +  CI C +C A CP +AIT E G               D+  CI CG C  A
Sbjct: 179 LMDDVINQGLCIGCGICAASCPVRAITHEFGK-----------PQGDLNLCIKCGSCYGA 227

Query: 113 CP 114
           CP
Sbjct: 228 CP 229



 Score = 38.2 bits (87), Expect = 0.36,   Method: Composition-based stats.
 Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNF 124
           I+   CI CG+C  +CPV AI     F
Sbjct: 184 INQGLCIGCGICAASCPVRAI--THEF 208


>gi|78065616|ref|YP_368385.1| formate dehydrogenase, alpha subunit [Burkholderia sp. 383]
 gi|77966361|gb|ABB07741.1| formate dehydrogenase alpha subunit [Burkholderia sp. 383]
          Length = 983

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 20/69 (28%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     +                   +C+ CG C  
Sbjct: 187 YFTYDPSKCIVCNRCVRACEETQGTFALTIAARGFESRVAAGESESFMASECVSCGACVA 246

Query: 112 ACPVDAIVE 120
           ACP   + E
Sbjct: 247 ACPTATLQE 255


>gi|299139029|ref|ZP_07032206.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Acidobacterium sp. MP5ACTX8]
 gi|298599183|gb|EFI55344.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Acidobacterium sp. MP5ACTX8]
          Length = 86

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 3/55 (5%)

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           C   CP   I      +   G     +  ID ++CI CG C   CPV AI  G +
Sbjct: 17  CVDACPVDCIHP---KKDETGHGEAEQLFIDPVECIDCGACVPVCPVSAIYAGDD 68


>gi|325680883|ref|ZP_08160420.1| 4Fe-4S binding domain protein [Ruminococcus albus 8]
 gi|324107347|gb|EGC01626.1| 4Fe-4S binding domain protein [Ruminococcus albus 8]
          Length = 405

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 6/63 (9%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C  C  C   CP   I ++                 D  KCI CG C + CPV    +
Sbjct: 9   KDCCGCSACMNSCPKDCIKMKPDKEG------FSYPVTDAAKCIDCGRCTKVCPVLNKNK 62

Query: 121 GPN 123
             +
Sbjct: 63  TDD 65


>gi|222100045|ref|YP_002534613.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermotoga
           neapolitana DSM 4359]
 gi|221572435|gb|ACM23247.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermotoga
           neapolitana DSM 4359]
          Length = 521

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 11/65 (16%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             C  C  C   CP +A++  SG              + + +CI+CG C E CP  A + 
Sbjct: 10  TDCRYCYKCLRNCPVKAVSFRSGKS-----------TVVVEECIFCGTCLEVCPQSARIY 58

Query: 121 GPNFE 125
             + E
Sbjct: 59  RKDTE 63


>gi|170759045|ref|YP_001787152.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum A3
           str. Loch Maree]
 gi|169406034|gb|ACA54445.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum A3
           str. Loch Maree]
          Length = 574

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 11/77 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +         C  C  C   CP +AI  ++              +I   +CI CG C   
Sbjct: 1   MNYIDISGLNCKNCYKCLRACPVKAIKFKNEKA-----------EIVEERCISCGRCLVI 49

Query: 113 CPVDAIVEGPNFEFATE 129
           CP +A  + P+ ++  +
Sbjct: 50  CPQNAKKDKPDIKYVKD 66



 Score = 33.5 bits (75), Expect = 9.8,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 14/35 (40%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           DI  + C  C  C  ACPV AI          E R
Sbjct: 5   DISGLNCKNCYKCLRACPVKAIKFKNEKAEIVEER 39


>gi|167630077|ref|YP_001680576.1| heterodisulfide reductase, subunit a [Heliobacterium modesticaldum
           Ice1]
 gi|167592817|gb|ABZ84565.1| heterodisulfide reductase, subunit a [Heliobacterium modesticaldum
           Ice1]
          Length = 660

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 57  PNGEERCIACKLCEAICPAQAIT-IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
              E  C  C LC +ICP +AI       R H GTR      ++   C  CG C  ACP 
Sbjct: 578 RCDEAYCSGCGLCVSICPYKAIELKRISERVHGGTRERQVSSVNQGLCQGCGACSVACPS 637

Query: 116 DAIVE 120
            A+  
Sbjct: 638 SAMNL 642



 Score = 37.0 bits (84), Expect = 0.99,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 27/85 (31%), Gaps = 12/85 (14%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGP-------RCHDGTRRTVRYDIDMIKCIY---- 105
                +C  C LC   CP + ++                      +  ID   C Y    
Sbjct: 237 YVDVNKCTGCGLCSEKCPKKVVSEFEMKLGTRKAIYVPFPQAVPNKPVIDAKNCRYLSEG 296

Query: 106 -CGLCQEACPVDAIVEGPNFEFATE 129
            CG+C++ CP  A+      E   E
Sbjct: 297 KCGVCKKVCPTGAVDFEQKDELIVE 321



 Score = 35.1 bits (79), Expect = 3.7,   Method: Composition-based stats.
 Identities = 13/37 (35%), Positives = 14/37 (37%), Gaps = 1/37 (2%)

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFE-FATETRQ 132
             D   C  CGLC   CP  AI      E     TR+
Sbjct: 578 RCDEAYCSGCGLCVSICPYKAIELKRISERVHGGTRE 614


>gi|167564980|ref|ZP_02357896.1| iron-sulfur cluster binding protein [Burkholderia oklahomensis
           EO147]
          Length = 481

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 26/105 (24%), Gaps = 10/105 (9%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-QAIT 79
           +       K    ++ P E             L        RCI C  C   CP   A+ 
Sbjct: 275 YTTFSTGPKRGDDLDGPREYHVVLVDNGRTRMLAGEFRDMLRCIRCGACMNHCPVYGAVG 334

Query: 80  IESGPRCHDGTR---------RTVRYDIDMIKCIYCGLCQEACPV 115
             +    + G                      C   G C E CPV
Sbjct: 335 GHAYGWVYPGPMGAVLTPLLQGIEHDTDLPNACTLNGRCAEVCPV 379



 Score = 35.1 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNF 124
           M++CI CG C   CPV   V G  +
Sbjct: 314 MLRCIRCGACMNHCPVYGAVGGHAY 338


>gi|148379736|ref|YP_001254277.1| sulfite/nitrite reductase family protein [Clostridium botulinum A
           str. ATCC 3502]
 gi|153934060|ref|YP_001384033.1| sulfite/nitrite reductase family protein [Clostridium botulinum A
           str. ATCC 19397]
 gi|153936092|ref|YP_001387575.1| sulfite/nitrite reductase family protein [Clostridium botulinum A
           str. Hall]
 gi|148289220|emb|CAL83315.1| anaerobic sulfite reductase subunit C [Clostridium botulinum A str.
           ATCC 3502]
 gi|152930104|gb|ABS35604.1| sulfite/nitrite reductase family protein [Clostridium botulinum A
           str. ATCC 19397]
 gi|152932006|gb|ABS37505.1| sulfite/nitrite reductase family protein [Clostridium botulinum A
           str. Hall]
          Length = 284

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 23/109 (21%), Positives = 34/109 (31%), Gaps = 20/109 (18%)

Query: 12  FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71
           F  E    F + L         +  P      S    G          EE+C  C +C  
Sbjct: 126 FGYELPSKFKITL---------VGCPNNCAKASINDIGIMGQAYVEFDEEKCKVCGICTK 176

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            C  +A+T+E+                    C+ CG C   CP +A+  
Sbjct: 177 SCRQKAVTVENKKIV-----------YKKDLCVNCGKCATVCPFEAMTI 214


>gi|254975966|ref|ZP_05272438.1| indolepyruvate oxidoreductase subunit [Clostridium difficile
           QCD-66c26]
 gi|255093353|ref|ZP_05322831.1| indolepyruvate oxidoreductase subunit [Clostridium difficile CIP
           107932]
 gi|255315099|ref|ZP_05356682.1| indolepyruvate oxidoreductase subunit [Clostridium difficile
           QCD-76w55]
 gi|255517769|ref|ZP_05385445.1| indolepyruvate oxidoreductase subunit [Clostridium difficile
           QCD-97b34]
 gi|255650882|ref|ZP_05397784.1| indolepyruvate oxidoreductase subunit [Clostridium difficile
           QCD-37x79]
 gi|306520773|ref|ZP_07407120.1| indolepyruvate oxidoreductase subunit [Clostridium difficile
           QCD-32g58]
          Length = 595

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 10/60 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++CI CKLC          +++G       +     +ID  +C+ CG+C + CP  AI
Sbjct: 541 DHDKCIGCKLC----------LKTGCPALSFDKENKLSNIDRNQCVGCGVCAQVCPKQAI 590


>gi|33595781|ref|NP_883424.1| NAD-dependent formate dehydrogenase alpha subunit [Bordetella
           parapertussis 12822]
 gi|33565860|emb|CAE36406.1| NAD-dependent formate dehydrogenase alpha subunit [Bordetella
           parapertussis]
          Length = 958

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 22/69 (31%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     SG                  +C+ CG C +
Sbjct: 162 YFTYDPSKCIVCNRCVRACEETQGTFALTISGKGFASRVSPGQDQPFMDSECVSCGACVQ 221

Query: 112 ACPVDAIVE 120
           ACP   + E
Sbjct: 222 ACPTSTLQE 230


>gi|170732342|ref|YP_001764289.1| formate dehydrogenase subunit alpha [Burkholderia cenocepacia
           MC0-3]
 gi|254246012|ref|ZP_04939333.1| Formate dehydrogenase, alpha subunit [Burkholderia cenocepacia
           PC184]
 gi|124870788|gb|EAY62504.1| Formate dehydrogenase, alpha subunit [Burkholderia cenocepacia
           PC184]
 gi|169815584|gb|ACA90167.1| formate dehydrogenase, alpha subunit [Burkholderia cenocepacia
           MC0-3]
          Length = 983

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 20/69 (28%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     +                   +C+ CG C  
Sbjct: 187 YFTYDPSKCIVCNRCVRACEETQGTFALTIAARGFESRVAAGESESFMASECVSCGACVA 246

Query: 112 ACPVDAIVE 120
           ACP   + E
Sbjct: 247 ACPTATLQE 255


>gi|150391790|ref|YP_001321839.1| molybdopterin oxidoreductase Fe4S4 region [Alkaliphilus
           metalliredigens QYMF]
 gi|149951652|gb|ABR50180.1| molybdopterin oxidoreductase Fe4S4 region [Alkaliphilus
           metalliredigens QYMF]
          Length = 348

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 55  RYPNGEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQE 111
            Y + +E+CI C  C  +C   Q             T     +D  ++   C+ CG C  
Sbjct: 138 FYYSDQEKCILCGKCVYVCSQLQGTDAIGFAERGFDTHIATPFDKGLEHSTCVSCGNCVS 197

Query: 112 ACPVDAIV 119
            CPV A++
Sbjct: 198 VCPVGALM 205


>gi|331087633|ref|ZP_08336561.1| indolepyruvate ferredoxin oxidoreductase [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|330399812|gb|EGG79472.1| indolepyruvate ferredoxin oxidoreductase [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 581

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 11/70 (15%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           Y    ++C  C +C          +   P             ID   C  CGLC++ C  
Sbjct: 523 YIAHADKCKKCGMCMK---PGCPAMTKNPDG--------TIHIDDTMCTGCGLCKDLCKF 571

Query: 116 DAIVEGPNFE 125
           DAI      E
Sbjct: 572 DAIELIKEGE 581


>gi|325478991|gb|EGC82092.1| electron transport complex, RnfABCDGE type, C subunit [Anaerococcus
           prevotii ACS-065-V-Col13]
          Length = 441

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 9/97 (9%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPN---GEERCIACKLCEAICPAQAITIESGPRCHDGT 90
           I  P               L          + CI C  C ++CP + + +          
Sbjct: 338 IAQPDLNRPVEKASNCILVLASDEAKPLDVDPCIRCSRCVSVCPVELLPLYIHK-FSLEE 396

Query: 91  RRTVRYDIDMIKCIYCGLCQEACP-----VDAIVEGP 122
           R     +++++ CI CG C   CP     V+AI  G 
Sbjct: 397 RFEKAQELNIMDCIECGSCSFVCPSNRPLVEAIKFGK 433


>gi|293382625|ref|ZP_06628555.1| iron-sulfur cluster-binding protein [Enterococcus faecalis R712]
 gi|293386658|ref|ZP_06631233.1| iron-sulfur cluster-binding protein [Enterococcus faecalis S613]
 gi|312978974|ref|ZP_07790696.1| 4Fe-4S binding domain protein [Enterococcus faecalis DAPTO 516]
 gi|291079985|gb|EFE17349.1| iron-sulfur cluster-binding protein [Enterococcus faecalis R712]
 gi|291083910|gb|EFE20873.1| iron-sulfur cluster-binding protein [Enterococcus faecalis S613]
 gi|311288213|gb|EFQ66769.1| 4Fe-4S binding domain protein [Enterococcus faecalis DAPTO 516]
          Length = 149

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 15/69 (21%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           + RY   +++CI C  C+ +C                  +    + + ++CI CG C+ A
Sbjct: 93  IFRYRLDKDKCINCGKCKKVCQMN---------------KDSVENCNHLECIRCGRCKNA 137

Query: 113 CPVDAIVEG 121
           CPVDAI  G
Sbjct: 138 CPVDAISYG 146


>gi|297568998|ref|YP_003690342.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfurivibrio alkaliphilus AHT2]
 gi|296924913|gb|ADH85723.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfurivibrio alkaliphilus AHT2]
          Length = 270

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 23/74 (31%), Positives = 28/74 (37%), Gaps = 10/74 (13%)

Query: 47  FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
           FRGE         E+ C  C  C   C  QAI                R  I  ++C  C
Sbjct: 202 FRGEQV---AVVDEQLCNGCGACTEACQFQAIASRQTTDGD-------RAAISPLQCYGC 251

Query: 107 GLCQEACPVDAIVE 120
           GLC+ ACP  A+  
Sbjct: 252 GLCRNACPTGALSM 265


>gi|269791768|ref|YP_003316672.1| hydrogenase, Fe-only [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269099403|gb|ACZ18390.1| hydrogenase, Fe-only [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 585

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 59  GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115
             ++C+ C+ CE +C   Q + + SG            ++  ++   C +CG C   CP 
Sbjct: 147 DMDKCVMCRRCETMCNEVQTVGVLSGVNRGFNAVVAPAFEKPLVDTVCTFCGQCAAVCPT 206

Query: 116 DAIVEGP 122
            A+VE  
Sbjct: 207 GALVERD 213


>gi|218886148|ref|YP_002435469.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
 gi|218757102|gb|ACL08001.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           vulgaris str. 'Miyazaki F']
          Length = 263

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/81 (23%), Positives = 27/81 (33%), Gaps = 16/81 (19%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC--------- 103
           L+       RC  C  C   CPA AI   + P       ++    +   +C         
Sbjct: 155 LQPGHPLMNRCGNCTSCADACPAGAIKGTALPNEPGAHYQSRDEALHFERCRTLLQGDFA 214

Query: 104 ----IY---CGLCQEACPVDA 117
               I    CG+C + CP  A
Sbjct: 215 RRPLIGHSVCGVCVKVCPWGA 235


>gi|33600307|ref|NP_887867.1| NAD-dependent formate dehydrogenase alpha subunit [Bordetella
           bronchiseptica RB50]
 gi|33567906|emb|CAE31819.1| NAD-dependent formate dehydrogenase alpha subunit [Bordetella
           bronchiseptica RB50]
          Length = 958

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 22/69 (31%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     SG                  +C+ CG C +
Sbjct: 162 YFTYDPSKCIVCNRCVRACEETQGTFALTISGKGFASRVSPGQDQPFMDSECVSCGACVQ 221

Query: 112 ACPVDAIVE 120
           ACP   + E
Sbjct: 222 ACPTSTLQE 230


>gi|330815876|ref|YP_004359581.1| hypothetical protein bgla_1g09420 [Burkholderia gladioli BSR3]
 gi|327368269|gb|AEA59625.1| hypothetical protein bgla_1g09420 [Burkholderia gladioli BSR3]
          Length = 982

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 21/69 (30%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     +G                  +C+ CG C  
Sbjct: 187 YFSYDPSKCIVCNRCVRACEETQGTFALTIAGRGFESRVAAGEGGSFMESECVSCGACVA 246

Query: 112 ACPVDAIVE 120
           ACP   + E
Sbjct: 247 ACPTATLQE 255


>gi|313904993|ref|ZP_07838364.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Eubacterium cellulosolvens 6]
 gi|313470250|gb|EFR65581.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Eubacterium cellulosolvens 6]
          Length = 102

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 10/66 (15%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ++C  C LC  +CP  AI  + G R             D   C  CG+C + CP DAIV 
Sbjct: 47  DKCKQCLLCCPVCPDVAIPFKDGKRLEF----------DYDHCKGCGICAKVCPFDAIVM 96

Query: 121 GPNFEF 126
               E 
Sbjct: 97  KEGIEP 102


>gi|282882494|ref|ZP_06291115.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Peptoniphilus lacrimalis 315-B]
 gi|281297636|gb|EFA90111.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Peptoniphilus lacrimalis 315-B]
          Length = 310

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/72 (26%), Positives = 26/72 (36%), Gaps = 15/72 (20%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
             +     ++CI CK C   C       +               D +  +CI CGLC   
Sbjct: 234 FLQMKVNFDKCIGCKKCYKACKMDVDVCK---------------DPNHNECIRCGLCINV 278

Query: 113 CPVDAIVEGPNF 124
           CPV+AI     F
Sbjct: 279 CPVEAIEFRYGF 290


>gi|269139847|ref|YP_003296548.1| NADPH-dependent glutamate synthase beta chain and related
           oxidoreductase [Edwardsiella tarda EIB202]
 gi|267985508|gb|ACY85337.1| NADPH-dependent glutamate synthase beta chain and related
           oxidoreductase [Edwardsiella tarda EIB202]
 gi|304559686|gb|ADM42350.1| Pyridine nucleotide-disulfide oxidoreductase family protein
           [Edwardsiella tarda FL6-60]
          Length = 545

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 18/59 (30%), Gaps = 9/59 (15%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            C  C  C   CP  A              + + Y  D  KC  C  C   CP  AI  
Sbjct: 489 NCFECDGCYGACPEGA---------VIKLGKGLHYRFDYDKCTGCQACYLQCPCHAIEM 538


>gi|237711984|ref|ZP_04542465.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
 gi|229454679|gb|EEO60400.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
          Length = 508

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           ++C  C   CP  AI +       + + +     ++  +CI CG C+  CP
Sbjct: 442 VSCGNCARHCPTGAIQMIPEDENDESSPKIPV--VNTERCIGCGACENLCP 490



 Score = 42.4 bits (98), Expect = 0.019,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 21/64 (32%), Gaps = 4/64 (6%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRY----DIDMIKCIYCGLCQEACPVDAIVEG 121
           C  C  +CP  AI + S             +     I     + CG C   CP  AI   
Sbjct: 400 CAKCAEVCPTDAIHLTSLAEKSAIQIGHAVWIAQNCIVNTDKVSCGNCARHCPTGAIQMI 459

Query: 122 PNFE 125
           P  E
Sbjct: 460 PEDE 463



 Score = 40.5 bits (93), Expect = 0.078,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 28/84 (33%), Gaps = 3/84 (3%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
            +K             R   +  + C AC+LC ++CP Q +      +       +    
Sbjct: 335 DKKNPKRATSIVPAGARGLRHFAQHCTACQLCVSVCPNQVLRPSGDLKRLMQPEMSYERG 394

Query: 98  IDMIKCIYCGLCQEACPVDAIVEG 121
               K   C  C E CP DAI   
Sbjct: 395 YCRPK---CAKCAEVCPTDAIHLT 415


>gi|283797938|ref|ZP_06347091.1| putative 4Fe-4S binding domain protein [Clostridium sp. M62/1]
 gi|291074405|gb|EFE11769.1| putative 4Fe-4S binding domain protein [Clostridium sp. M62/1]
 gi|295091868|emb|CBK77975.1| Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits
           [Clostridium cf. saccharolyticum K10]
          Length = 209

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 11/75 (14%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103
           S  F G  A        ++CI CKLC + CP + I I   P             I+   C
Sbjct: 140 SFSFGGAQAKETGYFVTDKCIGCKLCYSKCPQKCIDITQKPVA-----------IEQEHC 188

Query: 104 IYCGLCQEACPVDAI 118
           ++CG C E CP  A+
Sbjct: 189 LHCGNCFEICPAGAV 203


>gi|255102532|ref|ZP_05331509.1| putative iron-sulfur-binding membrane protein [Clostridium
           difficile QCD-63q42]
          Length = 296

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 15/66 (22%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           Y   EE+CI+C  C+ +C      +E               + + ++CI CG C+ ACPV
Sbjct: 243 YRLDEEKCISCGRCKKVCQMNIDPVE---------------NCNHLECIRCGRCKNACPV 287

Query: 116 DAIVEG 121
           DAI  G
Sbjct: 288 DAISCG 293


>gi|242280658|ref|YP_002992787.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
 gi|242123552|gb|ACS81248.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio
           salexigens DSM 2638]
          Length = 304

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 11/65 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++CI C  C   CP  A+ +           R  R  ID  KC+ CG+C   C  DA+
Sbjct: 239 DPQKCIGCGQCMEYCPFGAMHL-----------RDKRMRIDPKKCMGCGVCTNKCRKDAL 287

Query: 119 VEGPN 123
               N
Sbjct: 288 RLARN 292



 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 13/25 (52%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGP 122
           +D  KCI CG C E CP  A+    
Sbjct: 238 VDPQKCIGCGQCMEYCPFGAMHLRD 262


>gi|212694726|ref|ZP_03302854.1| hypothetical protein BACDOR_04258 [Bacteroides dorei DSM 17855]
 gi|237727297|ref|ZP_04557778.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Bacteroides sp. D4]
 gi|212662705|gb|EEB23279.1| hypothetical protein BACDOR_04258 [Bacteroides dorei DSM 17855]
 gi|229434153|gb|EEO44230.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Bacteroides dorei 5_1_36/D4]
          Length = 606

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 12/83 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +E+C  C  C  IC   AIT           R      +D   C  CG+C+  CP    
Sbjct: 6   DKEKCCGCNACGDICNQHAITFHLDREGFWYPR------VDPNLCTNCGMCERTCPQLVK 59

Query: 119 VEGPNFE------FATETRQELY 135
            +  ++       FA  ++ E  
Sbjct: 60  YDQKHYHLQTPRVFAAYSKDEDI 82


>gi|187934157|ref|YP_001886542.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium
           botulinum B str. Eklund 17B]
 gi|187722310|gb|ACD23531.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium
           botulinum B str. Eklund 17B]
          Length = 1171

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/105 (20%), Positives = 32/105 (30%), Gaps = 20/105 (19%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI----------------- 80
           F  G+T+   RG          +++CI C  C  +CP   I                   
Sbjct: 667 FMAGTTAYEKRGIAVNVPEWL-QDKCIQCNQCSYVCPHATIRPFLLNEEEKLKAPSSIKL 725

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD--AIVEGPN 123
                     +      +  + C  CG C E CP    A++  P 
Sbjct: 726 IEPKALKSDEKLYYSIGVTPLDCTGCGNCVEVCPAPGKALIMKPQ 770


>gi|209551210|ref|YP_002283127.1| formate dehydrogenase, subunit alpha [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209536966|gb|ACI56901.1| formate dehydrogenase, alpha subunit [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 959

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 3/75 (4%)

Query: 55  RYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRT--VRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C   Q     +      G++ +          +C+ CG C +
Sbjct: 170 YFTFDPSKCIVCSRCVRACEEVQGTFALTIEGRGFGSKVSSGAHEAFIDSECVSCGACVQ 229

Query: 112 ACPVDAIVEGPNFEF 126
           ACP   + E    E 
Sbjct: 230 ACPTATLTEKSVIEI 244


>gi|186475492|ref|YP_001856962.1| formate dehydrogenase subunit alpha [Burkholderia phymatum STM815]
 gi|184191951|gb|ACC69916.1| formate dehydrogenase, alpha subunit [Burkholderia phymatum STM815]
          Length = 979

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 20/64 (31%), Gaps = 3/64 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     SG         +        +C+ CG C  
Sbjct: 186 YFTYDPSKCIVCNRCVRACEETQGTFALTISGRGFESRVAASESQPFMESECVSCGACVA 245

Query: 112 ACPV 115
           ACP 
Sbjct: 246 ACPT 249


>gi|11545455|gb|AAG37855.1|AF298190_5 NAD-dependent formate dehydrogenase alpha subunit [Sinorhizobium
           meliloti]
          Length = 959

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/75 (24%), Positives = 25/75 (33%), Gaps = 3/75 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     SG          +  D    +C+ CG C +
Sbjct: 170 YFTYDSAKCIVCSRCVRACEEVQGTFALTISGRGFDSRVSAGMNEDFVSSECVSCGACVQ 229

Query: 112 ACPVDAIVEGPNFEF 126
           ACP   + E    E 
Sbjct: 230 ACPTATLTEKSVIEI 244


>gi|78187471|ref|YP_375514.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Chlorobium
           luteolum DSM 273]
 gi|78167373|gb|ABB24471.1| Pyruvate:ferredoxin (flavodoxin) oxidoreductase [Chlorobium
           luteolum DSM 273]
          Length = 1184

 Score = 43.2 bits (100), Expect = 0.014,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 19/73 (26%), Gaps = 16/73 (21%)

Query: 58  NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRYDID--MI 101
              + CI C  C  +CP                A                ++Y I     
Sbjct: 689 WEPDLCIECGKCTMVCPHAAIRAKVYDPKYLENAPRTYKSMEAKGVNWEGMKYTIQVAPE 748

Query: 102 KCIYCGLCQEACP 114
            C  C +C   CP
Sbjct: 749 DCTGCKVCAHICP 761



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 14/55 (25%), Positives = 18/55 (32%), Gaps = 13/55 (23%)

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVR 154
              CI CG C   CP  AI                 YD + L N    ++S   +
Sbjct: 691 PDLCIECGKCTMVCPHAAIRAK-------------VYDPKYLENAPRTYKSMEAK 732


>gi|315427993|dbj|BAJ49582.1| Fe-S oxidoreductase [Candidatus Caldiarchaeum subterraneum]
          Length = 669

 Score = 42.8 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 40/123 (32%), Gaps = 19/123 (15%)

Query: 47  FRGEHALRRYPN-GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY--------- 96
           FR    L      G + C  C  CEA CPA A      PR      R   +         
Sbjct: 277 FRSLTELGWMEKLGLDACTDCGRCEAACPAYAAGTPLSPRDIVQKLRRQLWRGDGLDEDV 336

Query: 97  -------DIDMIKCIYCGLCQEACPVDAIVEGPNFEF--ATETRQELYYDKERLLNNGDR 147
                  + ++  C  C  C EACPV         E   A     +L   K  +L N  R
Sbjct: 337 FASGLIDEEEVWACTTCSACIEACPVLIRPMDYILEMRRALTLEGKLDKRKTAMLTNLSR 396

Query: 148 WES 150
           + +
Sbjct: 397 YGN 399


>gi|313148455|ref|ZP_07810648.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Bacteroides
           fragilis 3_1_12]
 gi|313137222|gb|EFR54582.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Bacteroides
           fragilis 3_1_12]
          Length = 289

 Score = 42.8 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 19/64 (29%), Gaps = 12/64 (18%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
             +   E  C  C  C  +CP  AI                       +CI C  C + C
Sbjct: 213 TPWVEDESLCTHCGACAKMCPVSAIIKGDELNTD------------AERCIKCCACVKGC 260

Query: 114 PVDA 117
           P  A
Sbjct: 261 PQKA 264



 Score = 38.2 bits (87), Expect = 0.45,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
             +  D   C +CG C + CPV AI++G  
Sbjct: 213 TPWVEDESLCTHCGACAKMCPVSAIIKGDE 242


>gi|257454853|ref|ZP_05620104.1| electron transport complex, rnfaBcdge type, b subunit
           [Enhydrobacter aerosaccus SK60]
 gi|257447786|gb|EEV22778.1| electron transport complex, rnfaBcdge type, b subunit
           [Enhydrobacter aerosaccus SK60]
          Length = 269

 Score = 42.8 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/62 (32%), Positives = 21/62 (33%), Gaps = 10/62 (16%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E CI C  C   CP  AI                 + I    C  C LC   CPVD I  
Sbjct: 114 EDCIGCTKCIPACPVDAIIGSGK----------RMHTIFTDLCTGCELCLPPCPVDCIEL 163

Query: 121 GP 122
            P
Sbjct: 164 VP 165



 Score = 37.4 bits (85), Expect = 0.69,   Method: Composition-based stats.
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           A+A   ++ P  +      +R  I    CI C  C  ACPVDAI
Sbjct: 90  AEASKWQTDPATNRPM--EMRAIIREEDCIGCTKCIPACPVDAI 131


>gi|302876992|ref|YP_003845625.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Clostridium cellulovorans 743B]
 gi|307687683|ref|ZP_07630129.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Clostridium cellulovorans 743B]
 gi|302579849|gb|ADL53861.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Clostridium cellulovorans 743B]
          Length = 254

 Score = 42.8 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 18/85 (21%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            N  + C+ C +C+ +CP + I +E                +   KC+ C  C   CP +
Sbjct: 181 FNVNDSCVGCNMCKKVCPIENIEMEDKKP------------VWKGKCVDCMACINICPQN 228

Query: 117 AIVEG------PNFEFATETRQELY 135
           AI  G        +      R+EL 
Sbjct: 229 AINIGTKTIKKNRYLNPYIKREELI 253


>gi|225181925|ref|ZP_03735359.1| flavodoxin/nitric oxide synthase [Dethiobacter alkaliphilus AHT 1]
 gi|225167365|gb|EEG76182.1| flavodoxin/nitric oxide synthase [Dethiobacter alkaliphilus AHT 1]
          Length = 274

 Score = 42.8 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 11/64 (17%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           +  + +++CI+C  C+  CP   IT     +   G             C+ C  C+  CP
Sbjct: 186 QMFHADKKCISCNRCQNKCPTGNITENKKGKPLWGH-----------NCLLCLTCEAVCP 234

Query: 115 VDAI 118
             AI
Sbjct: 235 TAAI 238


>gi|217420611|ref|ZP_03452116.1| formate dehydrogenase, NAD-dependent, alpha subunit [Burkholderia
           pseudomallei 576]
 gi|237813332|ref|YP_002897783.1| formate dehydrogenase, alpha subunit [Burkholderia pseudomallei
           MSHR346]
 gi|217396023|gb|EEC36040.1| formate dehydrogenase, NAD-dependent, alpha subunit [Burkholderia
           pseudomallei 576]
 gi|237504923|gb|ACQ97241.1| formate dehydrogenase, alpha subunit [Burkholderia pseudomallei
           MSHR346]
          Length = 984

 Score = 42.8 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 25/85 (29%), Gaps = 10/85 (11%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     +          +        +C+ CG C  
Sbjct: 187 YFSYDPSKCIVCNRCVRACEETQGTFALTIASRGFESRVAASAGEAFMDSECVSCGACVA 246

Query: 112 ACPVDAIVE-------GPNFEFATE 129
           ACP   +VE        P  E  T 
Sbjct: 247 ACPTATLVEKSVARLGQPEHEIVTT 271


>gi|167903758|ref|ZP_02490963.1| formate dehydrogenase, alpha subunit [Burkholderia pseudomallei
           NCTC 13177]
          Length = 984

 Score = 42.8 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 25/85 (29%), Gaps = 10/85 (11%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     +          +        +C+ CG C  
Sbjct: 187 YFSYDPSKCIVCNRCVRACEETQGTFALTIASRGFESRVAASAGEAFMDSECVSCGACVA 246

Query: 112 ACPVDAIVE-------GPNFEFATE 129
           ACP   +VE        P  E  T 
Sbjct: 247 ACPTATLVEKSVARLGQPEHEIVTT 271


>gi|118602142|ref|YP_903357.1| adenylylsulfate reductase, beta subunit [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|118567081|gb|ABL01886.1| dissimilatory adenylylsulfate reductase beta subunit [Candidatus
           Ruthia magnifica str. Cm (Calyptogena magnifica)]
          Length = 159

 Score = 42.8 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 8/68 (11%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
             RC  C  C  ICP+  + I+         +    Y+I+   C  C  C +ACP  AI 
Sbjct: 7   MTRCDGCGHCVDICPSNIMHIDD--------KYRRAYNIEPNMCWECYSCVKACPHQAID 58

Query: 120 EGPNFEFA 127
                +FA
Sbjct: 59  VRGYADFA 66


>gi|78043414|ref|YP_360379.1| sigma-54 dependent transcriptional regulator [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77995529|gb|ABB14428.1| sigma-54 dependent transcriptional regulator [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 732

 Score = 42.8 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 11/62 (17%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            L+     +E+C AC  C   CP +AI IE               ++   +CI CG C  
Sbjct: 3   RLQIVTTDKEKCKACYACVRNCPVKAIKIEEQKA-----------EVLEERCIACGNCVR 51

Query: 112 AC 113
            C
Sbjct: 52  VC 53


>gi|219670623|ref|YP_002461058.1| hydrogenase, Fe-only [Desulfitobacterium hafniense DCB-2]
 gi|219540883|gb|ACL22622.1| hydrogenase, Fe-only [Desulfitobacterium hafniense DCB-2]
          Length = 527

 Score = 42.8 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/91 (21%), Positives = 29/91 (31%), Gaps = 14/91 (15%)

Query: 39  EKGSTSPRFRGEHALRR----YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
           E G      RG   +          +++CI C  C  +C        +            
Sbjct: 57  EPGGWPTNVRGRVPIDPENPALRRDDQKCILCGQCIEVCKTIQSVYGNYELPLK------ 110

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
               + I CI CG C   CP  AI E  + +
Sbjct: 111 ----NEIPCINCGQCIHWCPSGAISEREDID 137


>gi|126438525|ref|YP_001059920.1| formate dehydrogenase, alpha subunit [Burkholderia pseudomallei
           668]
 gi|126218018|gb|ABN81524.1| formate dehydrogenase, NAD-dependent, alpha subunit [Burkholderia
           pseudomallei 668]
          Length = 984

 Score = 42.8 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 25/85 (29%), Gaps = 10/85 (11%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     +          +        +C+ CG C  
Sbjct: 187 YFSYDPSKCIVCNRCVRACEETQGTFALTIASRGFESRVAASAGEAFMDSECVSCGACVA 246

Query: 112 ACPVDAIVE-------GPNFEFATE 129
           ACP   +VE        P  E  T 
Sbjct: 247 ACPTATLVEKSVARLGQPEHEIVTT 271


>gi|332299855|ref|YP_004441776.1| Electron transport complex protein rnfC [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332176918|gb|AEE12608.1| Electron transport complex protein rnfC [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 450

 Score = 42.8 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 18/56 (32%), Gaps = 1/56 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
               CI C  C ++CP                  +  ++     CI CG C   CP
Sbjct: 371 EMHDCIRCGKCVSVCPMGLNPAFLMRDTIYKDWESTEHNYIAD-CIECGSCSYTCP 425


>gi|300123855|emb|CBK25126.2| Iron-hydrogenase [Blastocystis hominis]
          Length = 759

 Score = 42.8 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 24/90 (26%), Positives = 28/90 (31%), Gaps = 6/90 (6%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
             P  K   +      +AL         CI CK C   C              DG    V
Sbjct: 132 QTPEMKEVLTESCDDSYAL---HRDMSLCIDCKRCARACSELQGMDVLVNNPLDGGFPVV 188

Query: 95  RYDIDMIK---CIYCGLCQEACPVDAIVEG 121
                ++K   CI CG C   CP  AI E 
Sbjct: 189 PTGHHLLKDTECISCGQCNVLCPTGAITEQ 218


>gi|257051628|ref|YP_003129461.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Halorhabdus
           utahensis DSM 12940]
 gi|256690391|gb|ACV10728.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Halorhabdus
           utahensis DSM 12940]
          Length = 108

 Score = 42.8 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 2/69 (2%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                  + C+A   C   CP         P   +  R+    +    +CI C LC + C
Sbjct: 37  THVAVDFDICLADGACLEDCPVDVFEWVETPGHPESERKADPAN--ETQCIDCMLCVDVC 94

Query: 114 PVDAIVEGP 122
           PVDAI   P
Sbjct: 95  PVDAIDVNP 103


>gi|154491084|ref|ZP_02031025.1| hypothetical protein PARMER_01005 [Parabacteroides merdae ATCC
           43184]
 gi|154088832|gb|EDN87876.1| hypothetical protein PARMER_01005 [Parabacteroides merdae ATCC
           43184]
          Length = 262

 Score = 42.8 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/87 (22%), Positives = 30/87 (34%), Gaps = 11/87 (12%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
             KG+   + +G    +     E+ C  C+ C  +CP  AI+I       D         
Sbjct: 169 EMKGNFPYKVKGPSTPQAPVTDEDLCTQCEYCIDVCPVSAISIVDDRIFSD--------- 219

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNF 124
                CI C  C + CP  A      +
Sbjct: 220 --PATCIKCCACVKECPEGARTFDTPY 244


>gi|158319329|ref|YP_001511836.1| molybdopterin oxidoreductase [Alkaliphilus oremlandii OhILAs]
 gi|158139528|gb|ABW17840.1| molybdopterin oxidoreductase [Alkaliphilus oremlandii OhILAs]
          Length = 1192

 Score = 42.8 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 26/95 (27%), Gaps = 10/95 (10%)

Query: 29  KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKL-----CEAICPAQAITIESG 83
           +       P E+          +          RC+ C       C+ +  +    +E  
Sbjct: 531 RPAMAHLSPEERRRNFEEIVAGYTEEAAKKDAMRCLECGCHDVFECKLLDYSNEYKVEPE 590

Query: 84  PRCHDGTRRTV-----RYDIDMIKCIYCGLCQEAC 113
               +   R           +  KCI CGLC   C
Sbjct: 591 RLYGEMHYRMEDDGHPFIVRNSDKCILCGLCVRVC 625



 Score = 42.0 bits (97), Expect = 0.029,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 3/65 (4%)

Query: 59  GEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYD-IDMIKCIYCGLCQEACPV 115
             ++CI C LC  +C     A  +    R  D   +      +    CI CG C   CP 
Sbjct: 611 NSDKCILCGLCVRVCDEVIGATALGLIDRGFDTIVKPPFNQKLKETDCISCGQCISICPT 670

Query: 116 DAIVE 120
            A+ E
Sbjct: 671 GALGE 675


>gi|112982681|ref|NP_001036911.1| ribonuclease L inhibitor homolog [Bombyx mori]
 gi|44886002|dbj|BAD11812.1| ribonuclease L inhibitor homolog [Bombyx mori]
          Length = 614

 Score = 42.8 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 23/68 (33%), Gaps = 3/68 (4%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP---N 123
           K C   C      +  G  C + T       I    CI C  C + CP DAI       N
Sbjct: 27  KRCRQECKKSCPVVRMGKLCIEVTPNDKIATISEELCIGCAFCVKKCPFDAITIINIPSN 86

Query: 124 FEFATETR 131
            E  T  R
Sbjct: 87  LEKHTTHR 94


>gi|21227088|ref|NP_633010.1| hypothetical protein MM_0986 [Methanosarcina mazei Go1]
 gi|20905415|gb|AAM30682.1| conserved protein [Methanosarcina mazei Go1]
          Length = 284

 Score = 42.8 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 20/75 (26%), Gaps = 11/75 (14%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
            E          ++C  C+ C   C   A+                        C  CG 
Sbjct: 52  EEVVFLVPEINPDKCTLCRGCSDFCRYNALAAIPNRILSF-----------PSLCHGCGG 100

Query: 109 CQEACPVDAIVEGPN 123
           C   CP  AI E P 
Sbjct: 101 CSFVCPAGAIEEKPE 115


>gi|332297422|ref|YP_004439344.1| Fe-S cluster domain protein [Treponema brennaborense DSM 12168]
 gi|332180525|gb|AEE16213.1| Fe-S cluster domain protein [Treponema brennaborense DSM 12168]
          Length = 463

 Score = 42.8 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 11/57 (19%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
             C  C +C   CPA+AI + +G              I   +CI CG C   CP  A
Sbjct: 16  HMCKGCTICVTGCPAEAIRVRNGKAV-----------IMEERCIDCGECIRHCPNKA 61


>gi|332159297|ref|YP_004424576.1| hypothetical protein PNA2_1657 [Pyrococcus sp. NA2]
 gi|331034760|gb|AEC52572.1| hypothetical protein PNA2_1657 [Pyrococcus sp. NA2]
          Length = 297

 Score = 42.8 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 10/69 (14%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R     +      E CI C +C   CP + I ++              Y ++ + C  C 
Sbjct: 56  REHVGAKIARINPETCIRCGICRERCPYECIYMDEYGN----------YVVNELTCEGCN 105

Query: 108 LCQEACPVD 116
           +C   CPV 
Sbjct: 106 VCGLVCPVP 114



 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 3/42 (7%)

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           T     R H G +      I+   CI CG+C+E CP + I  
Sbjct: 50  TNWEEEREHVGAK---IARINPETCIRCGICRERCPYECIYM 88


>gi|331092302|ref|ZP_08341130.1| hypothetical protein HMPREF9477_01773 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401734|gb|EGG81313.1| hypothetical protein HMPREF9477_01773 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 56

 Score = 42.8 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 11/64 (17%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + C++C  CEA CP  AI+  +             Y+I    C+ CG C   CP
Sbjct: 1   MAHVISDECVSCGACEAECPVGAISQGAD-----------HYEISADACVDCGACAAQCP 49

Query: 115 VDAI 118
             AI
Sbjct: 50  TGAI 53


>gi|327400613|ref|YP_004341452.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
 gi|327316121|gb|AEA46737.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Archaeoglobus veneficus SNP6]
          Length = 572

 Score = 42.8 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 9/66 (13%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C  C+ C + CPA AI  +             R       C  C LC   CP +AI  
Sbjct: 445 DTCTLCRACASFCPANAIVRDIE---------NGRILFTHALCFACNLCVGVCPENAIKL 495

Query: 121 GPNFEF 126
               +F
Sbjct: 496 ENVLDF 501



 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 19/72 (26%), Gaps = 15/72 (20%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
            H      +G   C  C  C                     R      I++  C  CG C
Sbjct: 221 YHVCGTAKSGIPGCSLCLSC---------------PTGSIERYNDGLKINLESCTGCGFC 265

Query: 110 QEACPVDAIVEG 121
              CPV AI   
Sbjct: 266 AAVCPVSAIRNT 277


>gi|294675134|ref|YP_003575750.1| iron-sulfur cluster-binding protein [Prevotella ruminicola 23]
 gi|294472681|gb|ADE82070.1| iron-sulfur cluster-binding protein [Prevotella ruminicola 23]
          Length = 494

 Score = 42.8 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 2/51 (3%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           + C  C   CP+ AI  E  P   +     +   I+   CI CG C+  CP
Sbjct: 428 VECGNCARHCPSGAI--EMVPLDENDEESPMVPAINEAACIGCGACEYVCP 476



 Score = 37.4 bits (85), Expect = 0.60,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 22/76 (28%), Gaps = 1/76 (1%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM-IKCIYCGLCQEACP 114
           +      C  C         Q +  E       G    ++ +       + CG C   CP
Sbjct: 379 HGYCRPECTRCSEVCPAGAIQKVDKEEKTAIQIGHAVWIKKNCVPITDGVECGNCARHCP 438

Query: 115 VDAIVEGPNFEFATET 130
             AI   P  E   E+
Sbjct: 439 SGAIEMVPLDENDEES 454



 Score = 37.0 bits (84), Expect = 0.79,   Method: Composition-based stats.
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 13/75 (17%)

Query: 47  FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
           F    +  +    E++C  C LC   C A  I                 + ID  +C+ C
Sbjct: 206 FFARFSWLKIRFDEDKCKNCSLCSKNCKASCIDF-------------KTHSIDYTRCVVC 252

Query: 107 GLCQEACPVDAIVEG 121
           G C ++C   A+   
Sbjct: 253 GNCIDSCKFGALKYT 267



 Score = 34.7 bits (78), Expect = 4.8,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 29/84 (34%), Gaps = 3/84 (3%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           + N   RC  C+LC + CP Q +   S          +  +     +C     C E CP 
Sbjct: 339 FQNLATRCTGCQLCVSECPNQVLRPSSDLMHLMQPTMSYEHGYCRPECTR---CSEVCPA 395

Query: 116 DAIVEGPNFEFATETRQELYYDKE 139
            AI +    E          + K+
Sbjct: 396 GAIQKVDKEEKTAIQIGHAVWIKK 419


>gi|266622114|ref|ZP_06115049.1| sulfite reductase, subunit C [Clostridium hathewayi DSM 13479]
 gi|288866176|gb|EFC98474.1| sulfite reductase, subunit C [Clostridium hathewayi DSM 13479]
          Length = 353

 Score = 42.8 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/99 (19%), Positives = 28/99 (28%), Gaps = 7/99 (7%)

Query: 25  RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84
            ++         P +    +    G   + +     +RCI C  C   C   A       
Sbjct: 141 SHYHIKVAVAGCPNDCVKANFNDFGVMGIHKQIYDIDRCIGCGSCVDACEHHAT------ 194

Query: 85  RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                     + D D   C+ CG C   CP  A   G  
Sbjct: 195 -GVLSLNANGKIDKDTCCCVGCGECSLICPTGAWSRGKQ 232


>gi|225025857|ref|ZP_03715049.1| hypothetical protein EUBHAL_00085 [Eubacterium hallii DSM 3353]
 gi|224956808|gb|EEG38017.1| hypothetical protein EUBHAL_00085 [Eubacterium hallii DSM 3353]
          Length = 448

 Score = 42.8 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 14/82 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  C  C  C AIC                 +  +        CI CG C   CP  AI
Sbjct: 23  DEALCSQCGHCFAIC---------EEEIGVAAKYLLNPRETYQ-CIGCGQCSANCPEKAI 72

Query: 119 VEGPNFEFATETRQELYYDKER 140
           +  P+++      +EL  D ++
Sbjct: 73  IGKPHYKIV----KELIKDPDK 90


>gi|148380154|ref|YP_001254695.1| ferredoxin [Clostridium botulinum A str. ATCC 3502]
 gi|153934260|ref|YP_001384452.1| iron-sulfur cluster-binding protein [Clostridium botulinum A str.
           ATCC 19397]
 gi|148289638|emb|CAL83741.1| putative ferredoxin [Clostridium botulinum A str. ATCC 3502]
 gi|152930304|gb|ABS35804.1| iron-sulfur cluster-binding protein [Clostridium botulinum A str.
           ATCC 19397]
          Length = 273

 Score = 42.8 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 31/118 (26%), Positives = 44/118 (37%), Gaps = 25/118 (21%)

Query: 36  YPFEKGSTSPRFRGEHALRRY--PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93
            P+ K       +G+    R   P     CI CKLC  +CP  +I  E   + +      
Sbjct: 174 TPYRKYYMPKDEKGQPIDIRKVKPETNNNCIDCKLCANLCPMGSIDFEDVTKLN------ 227

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151
                    CI C  C + CPV+A      F+ +      L + KE  L N  R+  E
Sbjct: 228 -------GICIKCCACIKKCPVEA----KYFDDSGY----LKHKKE--LENNFRYRKE 268


>gi|189425893|ref|YP_001953070.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
           lovleyi SZ]
 gi|189422152|gb|ACD96550.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter
           lovleyi SZ]
          Length = 267

 Score = 42.8 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/101 (21%), Positives = 31/101 (30%), Gaps = 14/101 (13%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P   G+   + R            +RC  C  C   CP   IT++               
Sbjct: 170 PGIPGNLPYKERPPLGGIAPETDPQRCTLCGACARACPTTVITVQQTVITD--------- 220

Query: 97  DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
                +CI C  C  +CP  A     N    T  R+ L  +
Sbjct: 221 ---AARCILCCACTRSCPTQARFV--NHPMVTARREMLVQN 256


>gi|120601154|ref|YP_965554.1| ferredoxin-dependent glutamate synthase [Desulfovibrio vulgaris
           DP4]
 gi|120561383|gb|ABM27127.1| ferredoxin-dependent glutamate synthase [Desulfovibrio vulgaris
           DP4]
          Length = 544

 Score = 42.8 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/87 (20%), Positives = 27/87 (31%), Gaps = 15/87 (17%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPR---------CHDGTRRTVRYDIDMIK-- 102
            +       C  C  C A+CP  AI +    +             +     Y     +  
Sbjct: 19  WQVEWDRATCALCGRCTAVCPVNAIELGVHRQRIVDAPVGLAKRPSNAHTVYHGVRQRTD 78

Query: 103 ----CIYCGLCQEACPVDAIVEGPNFE 125
               C+ CG+C   CP +AI      E
Sbjct: 79  AAYACVGCGMCSMVCPNNAIRPVHQAE 105


>gi|91772646|ref|YP_565338.1| cobyrinic acid a,c-diamide synthase [Methanococcoides burtonii DSM
           6242]
 gi|91711661|gb|ABE51588.1| MinD /ParA family ATPase [Methanococcoides burtonii DSM 6242]
          Length = 284

 Score = 42.8 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 19/64 (29%), Gaps = 11/64 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            + +C  C  C   C   A+ I                 I    C  CG C   CP  AI
Sbjct: 62  DKNKCDLCGKCSDFCQFNALAILPEDVM-----------IFPTLCHGCGGCTIVCPNKAI 110

Query: 119 VEGP 122
            E  
Sbjct: 111 SEVD 114


>gi|34557450|ref|NP_907265.1| 2-oxoglutarate-acceptor oxidoreductase subunit OorD [Wolinella
           succinogenes DSM 1740]
 gi|34483166|emb|CAE10165.1| SUBUNIT OF 2-OXOGLUTARATE OXIDOREDUCTASE [Wolinella succinogenes]
          Length = 107

 Score = 42.8 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E RC AC LC ++CP+  + +++  +   G    +        CI CG C+  CP  
Sbjct: 13  WVDESRCKACDLCVSLCPSGTLAMKADSKRVLGKMIAIT---HPESCIGCGECELHCPDF 69

Query: 117 AIVEGPNFEF 126
           AI      E+
Sbjct: 70  AIYVADRLEY 79


>gi|313498079|gb|ADR59445.1| Dihydropyrimidine dehydrogenase [Pseudomonas putida BIRD-1]
          Length = 424

 Score = 42.8 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 4/65 (6%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV- 115
              +E CI C  C   C   +    +     DGT     Y +   +C+ C LCQ  CPV 
Sbjct: 339 HIDQEACIGCGRCHIACEDTSHQAIASTLEADGTHA---YSVIEEECVGCNLCQITCPVE 395

Query: 116 DAIVE 120
           + I  
Sbjct: 396 NCIEM 400


>gi|302392555|ref|YP_003828375.1| electron transfer flavoprotein alpha/beta-subunit [Acetohalobium
           arabaticum DSM 5501]
 gi|302204632|gb|ADL13310.1| Electron transfer flavoprotein alpha/beta-subunit [Acetohalobium
           arabaticum DSM 5501]
          Length = 399

 Score = 42.8 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 21/67 (31%), Gaps = 12/67 (17%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +  Y      C  C+ C   CP  AI I       +              C  CG+C + 
Sbjct: 1   MSNYTIDYANCTLCEECIEACPFDAIEIVDDKVEIN------------AACKACGICVDT 48

Query: 113 CPVDAIV 119
           CP   I 
Sbjct: 49  CPEGVIQ 55



 Score = 40.5 bits (93), Expect = 0.086,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 14/31 (45%)

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
              Y ID   C  C  C EACP DAI    +
Sbjct: 1   MSNYTIDYANCTLCEECIEACPFDAIEIVDD 31


>gi|288961355|ref|YP_003451694.1| protein [Azospirillum sp. B510]
 gi|288913663|dbj|BAI75150.1| protein [Azospirillum sp. B510]
          Length = 507

 Score = 42.8 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/57 (28%), Positives = 20/57 (35%), Gaps = 16/57 (28%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
             G   CI C  C  +CP                      D   ++CI CGLC +AC
Sbjct: 275 HQGLGDCIDCGHCVQVCPTG----------------IDIRDGIQMECIGCGLCVDAC 315



 Score = 37.4 bits (85), Expect = 0.61,   Method: Composition-based stats.
 Identities = 10/45 (22%), Positives = 13/45 (28%)

Query: 71  AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
            +   Q    E             R    +  CI CG C + CP 
Sbjct: 249 MVVTYQEWRGEGRAPLRKSEGWDTRTHQGLGDCIDCGHCVQVCPT 293


>gi|255307406|ref|ZP_05351577.1| indolepyruvate oxidoreductase subunit [Clostridium difficile ATCC
           43255]
          Length = 633

 Score = 42.8 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 10/60 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++CI CKLC          +++G       +     +ID  +C+ CG+C + CP  AI
Sbjct: 579 DHDKCIGCKLC----------LKTGCPALSFDKENKLSNIDRNQCVGCGVCAQVCPKQAI 628


>gi|224540477|ref|ZP_03681016.1| hypothetical protein BACCELL_05390 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224517919|gb|EEF87024.1| hypothetical protein BACCELL_05390 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 666

 Score = 42.8 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/105 (20%), Positives = 35/105 (33%), Gaps = 13/105 (12%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE--------SGPRCHDGTRRTVRYD 97
            F+    L+     E+ C  C LC   CP + I  E        +            +  
Sbjct: 226 NFKASIRLKAKSIDEKLCTGCGLCTTKCPTKKIPSEFNAGLGMRTAIYVPFPQAVPNKPV 285

Query: 98  IDMIKCIY-----CGLCQEACPVDAIVEGPNFEFATETRQELYYD 137
           ID + C +     CG+C++ CP  AI         +E    +   
Sbjct: 286 IDRVHCTHFRTGRCGVCEKVCPTGAIRFDQEDRIISENVGAIVVT 330



 Score = 40.1 bits (92), Expect = 0.095,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 1/62 (1%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
              C+ C +C+  CP QAI  E       G        ++   C  CG C   C   +I 
Sbjct: 589 FSTCVGCFMCQTACPYQAIEREEIKDR-TGKVLKTVAKVNPGLCQGCGTCVAFCRSKSID 647

Query: 120 EG 121
             
Sbjct: 648 IQ 649


>gi|221636035|ref|YP_002523911.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermomicrobium roseum DSM 5159]
 gi|221157849|gb|ACM06967.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermomicrobium roseum DSM 5159]
          Length = 510

 Score = 42.8 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 16/85 (18%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           EKG+     R    LR     +  C+       ICP +A+            R     D 
Sbjct: 42  EKGTFPHTRRSFTVLRCNHCDDAPCV------TICPTKALFR----------RPDGIVDF 85

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPN 123
           D  +CI C  C +ACP DA+   P 
Sbjct: 86  DADRCIGCKSCMQACPYDALYIDPI 110



 Score = 42.4 bits (98), Expect = 0.021,   Method: Composition-based stats.
 Identities = 23/100 (23%), Positives = 32/100 (32%), Gaps = 12/100 (12%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
              TI        T   FR    +  +    +RCI CK C   CP  A+ I+   R    
Sbjct: 65  PCVTIC------PTKALFRRPDGIVDF--DADRCIGCKSCMQACPYDALYIDPITRTAAK 116

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129
                      +       C   CP  AI+ G   +  +E
Sbjct: 117 CNYCSHRVDQGLL----PACVVVCPEKAIIAGDLDDPTSE 152



 Score = 42.0 bits (97), Expect = 0.027,   Method: Composition-based stats.
 Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 7/80 (8%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQA-----ITIESGPRCHDGTRRTVRYDIDMIKCIY 105
            A   +   + +CI C  C   C ++      +          GT    R    +++C +
Sbjct: 1   MARYGFVIDQRKCIGCHACTVACKSENLVPLGVYRTWVKYVEKGTFPHTRRSFTVLRCNH 60

Query: 106 CGL--CQEACPVDAIVEGPN 123
           C    C   CP  A+   P+
Sbjct: 61  CDDAPCVTICPTKALFRRPD 80


>gi|183231849|ref|XP_654696.2| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
 gi|169802305|gb|EAL49308.2| hypothetical protein EHI_194430 [Entamoeba histolytica HM-1:IMSS]
          Length = 189

 Score = 42.8 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 10/61 (16%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
             +CI C  C  +CP + +T                      +CI CG C   CPV AI+
Sbjct: 9   FNKCIGCLQCIRVCPTKVLTSTHMKSTLS----------FPERCISCGCCASVCPVGAII 58

Query: 120 E 120
            
Sbjct: 59  F 59


>gi|167581036|ref|ZP_02373910.1| formate dehydrogenase, alpha subunit [Burkholderia thailandensis
           TXDOH]
          Length = 984

 Score = 42.8 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 25/85 (29%), Gaps = 10/85 (11%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     +          +        +C+ CG C  
Sbjct: 187 YFSYDPAKCIVCNRCVRACEETQGTFALTIAARGFDSRVAASAGDAFMDSECVSCGACVA 246

Query: 112 ACPVDAIVE-------GPNFEFATE 129
           ACP   ++E        P  E  T 
Sbjct: 247 ACPTATLIEKSVARLGQPEHEVVTT 271


>gi|153953475|ref|YP_001394240.1| Fe-Fe hydrogenase 2 [Clostridium kluyveri DSM 555]
 gi|146346356|gb|EDK32892.1| Predicted Fe-Fe hydrogenase 2 [Clostridium kluyveri DSM 555]
          Length = 457

 Score = 42.8 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 10/59 (16%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                 E C  C+ C  +CP  A           G  +     IDM KCI CG C + C
Sbjct: 1   MINIDRELCTGCRRCADVCPVDA----------IGGNKGEPQAIDMEKCIMCGQCIQIC 49



 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 11/24 (45%), Positives = 13/24 (54%)

Query: 95  RYDIDMIKCIYCGLCQEACPVDAI 118
             +ID   C  C  C + CPVDAI
Sbjct: 1   MINIDRELCTGCRRCADVCPVDAI 24


>gi|70733834|ref|YP_257474.1| formate dehydrogenase subunit alpha [Pseudomonas fluorescens Pf-5]
 gi|68348133|gb|AAY95739.1| formate dehydrogenase, alpha subunit [Pseudomonas fluorescens Pf-5]
          Length = 965

 Score = 42.8 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     SG             +    +C+ CG C +
Sbjct: 168 YFDYDPSKCIVCNRCVRACEETQGTFALTISGRGFESRVAAAGGDNFLDSECVSCGACVQ 227

Query: 112 ACPVDAIVE 120
           ACP   ++E
Sbjct: 228 ACPTATLME 236


>gi|15668692|ref|NP_247491.1| polyferredoxin MvhB [Methanocaldococcus jannaschii DSM 2661]
 gi|48474782|sp|P81292|Y51A_METJA RecName: Full=Uncharacterized polyferredoxin-like protein MJ0514.1
 gi|2826292|gb|AAB98510.1| polyferredoxin (mvhB) [Methanocaldococcus jannaschii DSM 2661]
          Length = 163

 Score = 42.8 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 9/58 (15%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           ++CI+C  C  ICP  AIT  S           +   I+  KC++CG C++ CP +AI
Sbjct: 37  DKCISCGKCIEICPVNAITYSSDG---------LYITINKEKCVFCGKCKKVCPTNAI 85



 Score = 36.2 bits (82), Expect = 1.6,   Method: Composition-based stats.
 Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 6/72 (8%)

Query: 55  RYPNGEERCIACKLCEAICPAQA------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
                +E+C+ C  C+ +CP  A          +         +    D    +C  C +
Sbjct: 62  YITINKEKCVFCGKCKKVCPTNAIVIIRLRCEINEDARIIEVDKYEFIDYISERCASCLV 121

Query: 109 CQEACPVDAIVE 120
           C   CP +AI E
Sbjct: 122 CLRNCPFNAIEE 133



 Score = 34.7 bits (78), Expect = 4.2,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 21/39 (53%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136
           +   KCI CG C E CPV+AI    +  + T  +++  +
Sbjct: 34  VKEDKCISCGKCIEICPVNAITYSSDGLYITINKEKCVF 72



 Score = 33.5 bits (75), Expect = 9.3,   Method: Composition-based stats.
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 11/60 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ERC +C +C   CP  AI                +  ID+ KC  CG C+E CP++AI+ 
Sbjct: 114 ERCASCLVCLRNCPFNAIEE-----------YGSKIRIDINKCELCGKCEEICPLNAIIL 162


>gi|254181072|ref|ZP_04887670.1| formate dehydrogenase, alpha subunit [Burkholderia pseudomallei
           1655]
 gi|184211611|gb|EDU08654.1| formate dehydrogenase, alpha subunit [Burkholderia pseudomallei
           1655]
          Length = 984

 Score = 42.8 bits (99), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 25/85 (29%), Gaps = 10/85 (11%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     +          +        +C+ CG C  
Sbjct: 187 YFSYDPSKCIVCNRCVRACEETQGTFALTIASRGFESRVAASAGEAFMDSECVSCGACVA 246

Query: 112 ACPVDAIVE-------GPNFEFATE 129
           ACP   +VE        P  E  T 
Sbjct: 247 ACPTATLVEKSVARLGQPEHEIVTT 271


>gi|312898042|ref|ZP_07757448.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Megasphaera micronuciformis F0359]
 gi|310620867|gb|EFQ04421.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Megasphaera micronuciformis F0359]
          Length = 645

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 13/89 (14%)

Query: 32  TTINYPFEKGSTSPRFRGEHALRR--YPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
               +P      S   + +  L    +   +++CI CK C +     A+  +   R  + 
Sbjct: 562 IITKWPCVLKKFSKEDKEQFDLNMTPFVVDQDKCIGCKKCLS-TGCPALRFDDESRKSN- 619

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                      + C+ CG+C + CPV+AI
Sbjct: 620 ---------ISVDCVGCGVCAQVCPVNAI 639


>gi|302338379|ref|YP_003803585.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Spirochaeta
           smaragdinae DSM 11293]
 gi|301635564|gb|ADK80991.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Spirochaeta
           smaragdinae DSM 11293]
          Length = 377

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 9/85 (10%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              +  C  C+ CE  C    +  ++  +         +  ++   C+ CG C  AC  D
Sbjct: 192 HIDQALCRGCRRCERECANNGLEFDAAAK---------KMHVNQEHCVGCGRCLGACNFD 242

Query: 117 AIVEGPNFEFATETRQELYYDKERL 141
           AIV   +       R+   Y K  L
Sbjct: 243 AIVFSGDNAVELLNRRMAEYTKAVL 267


>gi|298368912|ref|ZP_06980230.1| iron-sulfur cluster-binding protein [Neisseria sp. oral taxon 014
           str. F0314]
 gi|298282915|gb|EFI24402.1| iron-sulfur cluster-binding protein [Neisseria sp. oral taxon 014
           str. F0314]
          Length = 481

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 18/65 (27%), Gaps = 10/65 (15%)

Query: 62  RCIACKLCEAICPA-----QAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQE 111
           +CI C  C   CP       A    + P                       C  CG C E
Sbjct: 317 QCIRCGACMNHCPVYTRIGGAAYGTTYPGPIGEIISPHLLGLEATRDLPTACTMCGACVE 376

Query: 112 ACPVD 116
            CPV 
Sbjct: 377 VCPVR 381


>gi|295115164|emb|CBL36011.1| Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits
           [butyrate-producing bacterium SM4/1]
          Length = 209

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 11/75 (14%)

Query: 44  SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103
           S  F G  A        ++CI CKLC + CP + I I   P             I+   C
Sbjct: 140 SFSFGGAQAKETGYFVTDKCIGCKLCYSKCPQKCIDITQKPVA-----------IEQEHC 188

Query: 104 IYCGLCQEACPVDAI 118
           ++CG C E CP  A+
Sbjct: 189 LHCGNCFEICPAGAV 203


>gi|264678475|ref|YP_003278382.1| electron transport complex, RnfABCDGE type, B [Comamonas
           testosteroni CNB-2]
 gi|262208988|gb|ACY33086.1| electron transport complex, RnfABCDGE type, B [Comamonas
           testosteroni CNB-2]
          Length = 220

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 20/60 (33%), Gaps = 10/60 (16%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C LC   CP  AI   +               +    C  C LC   CPVD I    
Sbjct: 90  CIGCTLCIKACPTDAILGANKRMHS----------VSAEHCTGCELCIPVCPVDCIELVN 139



 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C LC +ACP DAI
Sbjct: 85  IDEAWCIGCTLCIKACPTDAI 105


>gi|253698846|ref|YP_003020035.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Geobacter sp. M21]
 gi|251773696|gb|ACT16277.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Geobacter sp. M21]
          Length = 1183

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/91 (18%), Positives = 27/91 (29%), Gaps = 16/91 (17%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ----------------AITIESG 83
             +TS   +   A+      E+ CI C +C  +CP                  A    + 
Sbjct: 673 PTATSQYEKRNIAVDIPVWDEQLCIQCGICSFVCPHASIRMKVYDADKLSGAPATFKSAD 732

Query: 84  PRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            R ++         +    C  C  C   CP
Sbjct: 733 ARGNEFKGMKCTVQVAPEDCTGCAACVANCP 763



 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 13/39 (33%)

Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERL 141
           CI CG+C   CP  +I                 YD ++L
Sbjct: 696 CIQCGICSFVCPHASIRMK-------------VYDADKL 721


>gi|307153306|ref|YP_003888690.1| NADH:ubiquinone oxidoreductase subunit G, iron-sulfur-binding
           protein [Cyanothece sp. PCC 7822]
 gi|306983534|gb|ADN15415.1| NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding
           protein [Cyanothece sp. PCC 7822]
          Length = 238

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 22/69 (31%), Gaps = 4/69 (5%)

Query: 55  RYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDIDMI--KCIYCGLCQ 110
            +     RC+ C  C  +C     A   +   R       +           C  CG C 
Sbjct: 140 MFGIDHNRCVLCTRCVRVCDEIEGAHVWDVANRGAGDKIISGLNQPWGEVSACTSCGKCV 199

Query: 111 EACPVDAIV 119
           +ACP  AI 
Sbjct: 200 DACPTGAIF 208


>gi|167895371|ref|ZP_02482773.1| NAD-dependent formate dehydrogenase alpha subunit [Burkholderia
           pseudomallei 7894]
 gi|167919996|ref|ZP_02507087.1| NAD-dependent formate dehydrogenase alpha subunit [Burkholderia
           pseudomallei BCC215]
          Length = 984

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 25/85 (29%), Gaps = 10/85 (11%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     +          +        +C+ CG C  
Sbjct: 187 YFSYDPSKCIVCNRCVRACEETQGTFALTIASRGFESRVAASAGEAFMDSECVSCGACVA 246

Query: 112 ACPVDAIVE-------GPNFEFATE 129
           ACP   +VE        P  E  T 
Sbjct: 247 ACPTATLVEKSVARLGQPEHEIVTT 271


>gi|154151233|ref|YP_001404851.1| glutamate synthase (NADPH) [Candidatus Methanoregula boonei 6A8]
 gi|153999785|gb|ABS56208.1| Glutamate synthase (NADPH) [Methanoregula boonei 6A8]
          Length = 503

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 14/81 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              +C+ C  C   C       E             R  ++   C+ C  C   CP DAI
Sbjct: 15  DTGQCMNCGRCIENCSYGVYRREGD-----------RIVVNSRNCVACHRCTAFCPRDAI 63

Query: 119 VEGPNFEFATETRQELYYDKE 139
                +E  T+ R    + +E
Sbjct: 64  S---IYEKPTDYRSHPVWTRE 81


>gi|333030980|ref|ZP_08459041.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Bacteroides coprosuis DSM 18011]
 gi|332741577|gb|EGJ72059.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Bacteroides coprosuis DSM 18011]
          Length = 394

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 8/84 (9%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                 ++ C  CK CE ICP Q+IT+      ++G    V    +   CI C LC++ C
Sbjct: 1   MIDIQDKKECCGCKACEQICPKQSITMNVD---NEGFWYPVV---NHETCIECSLCEKVC 54

Query: 114 P--VDAIVEGPNFEFATETRQELY 135
           P  V+     P   +A     E  
Sbjct: 55  PELVERESITPISSYACYNLDETI 78


>gi|283850901|ref|ZP_06368187.1| NADH-quinone oxidoreductase, chain G [Desulfovibrio sp. FW1012B]
 gi|283573824|gb|EFC21798.1| NADH-quinone oxidoreductase, chain G [Desulfovibrio sp. FW1012B]
          Length = 806

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 4/89 (4%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93
             +P  K +   +  G        +   RCI C  C       A  ++ GP  +      
Sbjct: 123 RRWPGRKRTYLDQDLGPFV----QHEMNRCIHCYRCARFYQDYAGYLDFGPMQNANRVYF 178

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            R++   ++  + G   + CP  A+ + P
Sbjct: 179 GRFENGPLESPFAGNLADICPTGALTDKP 207


>gi|257066815|ref|YP_003153071.1| electron transport complex, RnfABCDGE type, C subunit [Anaerococcus
           prevotii DSM 20548]
 gi|256798695|gb|ACV29350.1| electron transport complex, RnfABCDGE type, C subunit [Anaerococcus
           prevotii DSM 20548]
          Length = 439

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 22/97 (22%), Positives = 31/97 (31%), Gaps = 9/97 (9%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGE---ERCIACKLCEAICPAQAITIESGPRCHDGT 90
           I  P     T         L            CI C  C  +CP   + +          
Sbjct: 336 IAQPDLTRPTEKASNCVLVLASDEAEPLEVSPCIRCGRCVDVCPVYLLPLYIHK-FSLEE 394

Query: 91  RRTVRYDIDMIKCIYCGLCQEACP-----VDAIVEGP 122
           R     +++++ CI CG C   CP     V+AI  G 
Sbjct: 395 RFEKAQELNIMDCIECGSCSFVCPSNRPLVEAIKFGK 431



 Score = 38.2 bits (87), Expect = 0.42,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 5/44 (11%)

Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGD 146
           CI CG C + CPV  +      +F+ E R    ++K + LN  D
Sbjct: 368 CIRCGRCVDVCPVYLLPLY-IHKFSLEER----FEKAQELNIMD 406


>gi|298528807|ref|ZP_07016211.1| methyl-viologen-reducing hydrogenase delta subunit
           [Desulfonatronospira thiodismutans ASO3-1]
 gi|298512459|gb|EFI36361.1| methyl-viologen-reducing hydrogenase delta subunit
           [Desulfonatronospira thiodismutans ASO3-1]
          Length = 1168

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 2/52 (3%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           C  C +C   CP  AI   +      G    +   ID   C  CG C  ACP
Sbjct: 949 CDGCGICIDRCPYAAIKYSACSGEKPGPDPGIW--IDEELCEGCGACVSACP 998



 Score = 40.1 bits (92), Expect = 0.10,   Method: Composition-based stats.
 Identities = 17/76 (22%), Positives = 23/76 (30%), Gaps = 12/76 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR-------TVRYDIDMIKCIY---- 105
                +CIAC  C   C        +                    Y ID   C+     
Sbjct: 102 FIDPAKCIACNWCTEACLKAVPDEFNLELKTRKCAYIYYRQSIPSTYVIDQKHCLRLTRG 161

Query: 106 -CGLCQEACPVDAIVE 120
            CG+C++ CP  AI  
Sbjct: 162 ICGICEKICPAGAIDF 177


>gi|225175193|ref|ZP_03729189.1| electron transport complex, RnfABCDGE type, C subunit [Dethiobacter
           alkaliphilus AHT 1]
 gi|225169369|gb|EEG78167.1| electron transport complex, RnfABCDGE type, C subunit [Dethiobacter
           alkaliphilus AHT 1]
          Length = 440

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 1/57 (1%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           +    CI C  C  +CP   + +  G     G         + + CI CG C   CP
Sbjct: 363 DEIRPCIKCAKCVEVCPVSIMPLFIGGSVEHGM-YDKAEAFNAMDCIECGCCTYICP 418



 Score = 33.9 bits (76), Expect = 8.3,   Method: Composition-based stats.
 Identities = 8/18 (44%), Positives = 9/18 (50%)

Query: 103 CIYCGLCQEACPVDAIVE 120
           CI C  C E CPV  +  
Sbjct: 368 CIKCAKCVEVCPVSIMPL 385


>gi|218130044|ref|ZP_03458848.1| hypothetical protein BACEGG_01629 [Bacteroides eggerthii DSM 20697]
 gi|217987764|gb|EEC54091.1| hypothetical protein BACEGG_01629 [Bacteroides eggerthii DSM 20697]
          Length = 277

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 23/76 (30%), Gaps = 12/76 (15%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G    R      E C  C  C   CPA A             ++      D  KCI C  
Sbjct: 196 GVPMPRIPAVDTELCNHCGYCAVHCPASA------------IKKGDECYTDAEKCIRCCA 243

Query: 109 CQEACPVDAIVEGPNF 124
           C + CP  A      F
Sbjct: 244 CVKGCPQKARTFDTPF 259


>gi|195017213|ref|XP_001984558.1| GH14962 [Drosophila grimshawi]
 gi|193898040|gb|EDV96906.1| GH14962 [Drosophila grimshawi]
          Length = 611

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 3/68 (4%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP---N 123
           K C   C      +  G  C + T  +    +    CI CG+C + CP +AI       N
Sbjct: 27  KRCRQECKKSCPVVRMGKLCIEVTPTSKIASLSEELCIGCGICVKKCPFEAITIINLPSN 86

Query: 124 FEFATETR 131
            E  T  R
Sbjct: 87  LEKHTTHR 94


>gi|159028669|emb|CAO88140.1| hoxU [Microcystis aeruginosa PCC 7806]
          Length = 238

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 21/68 (30%), Gaps = 4/68 (5%)

Query: 56  YPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLCQE 111
           +     RC+ C  C  +C     A   +   R                +  C  CG C  
Sbjct: 141 FGIDHNRCVLCTRCVRVCDEIEGAHVWDLAYRGEKDKIIAGMDQPWGSVSACTSCGKCVA 200

Query: 112 ACPVDAIV 119
           ACP  AI 
Sbjct: 201 ACPTGAIF 208


>gi|153814422|ref|ZP_01967090.1| hypothetical protein RUMTOR_00632 [Ruminococcus torques ATCC 27756]
 gi|317500140|ref|ZP_07958373.1| indolepyruvate ferredoxin oxidoreductase [Lachnospiraceae bacterium
           8_1_57FAA]
 gi|145848818|gb|EDK25736.1| hypothetical protein RUMTOR_00632 [Ruminococcus torques ATCC 27756]
 gi|316898429|gb|EFV20467.1| indolepyruvate ferredoxin oxidoreductase [Lachnospiraceae bacterium
           8_1_57FAA]
          Length = 585

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 11/70 (15%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           Y    ++C  C +C          +   P             ID   C  CGLC++ C  
Sbjct: 527 YIAHADKCKKCGMCMK---PGCPAMTKNPDG--------TIHIDDTMCTGCGLCKDLCKF 575

Query: 116 DAIVEGPNFE 125
           DAI      E
Sbjct: 576 DAIELIKEGE 585


>gi|124485065|ref|YP_001029681.1| formylmethanofuran dehydrogenase, subunit F [Methanocorpusculum
           labreanum Z]
 gi|124362606|gb|ABN06414.1| formylmethanofuran dehydrogenase, subunit F [Methanocorpusculum
           labreanum Z]
          Length = 387

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 7/67 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRC-------HDGTRRTVRYDIDMIKCIYCGLCQE 111
              +C  C +C  +CP  A+ +E                +  +  +ID  KC  C +C E
Sbjct: 76  DPAKCSYCGVCVILCPFNALGLEIDGEPSLPILEQEGFPQYDITAEIDESKCNRCTVCHE 135

Query: 112 ACPVDAI 118
            CP DAI
Sbjct: 136 VCPNDAI 142



 Score = 40.9 bits (94), Expect = 0.063,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 3/83 (3%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                    +L      E+ C AC++C   CP +AI ++   R  +  +   +  ID+  
Sbjct: 195 VPFNAETVKSLGDIVWDEKLCNACQVCALACPTEAIKVD---RVVESNKLPGKVTIDIDN 251

Query: 103 CIYCGLCQEACPVDAIVEGPNFE 125
           C  C  C+  CP +A+     F+
Sbjct: 252 CCTCAWCENTCPTEAVTIKKFFD 274



 Score = 38.5 bits (88), Expect = 0.32,   Method: Composition-based stats.
 Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 4/85 (4%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIA-CKLCEAICPAQAITIESGPRCHDGTR 91
           T  +      T      +          E+C A C  C  +CP +AI +   P    G +
Sbjct: 254 TCAWCENTCPTEAVTIKKFFDGEISFNAEKCPAGCSTCIEVCPCKAIYL-PSPASAVGMK 312

Query: 92  RTVRYDIDMIK--CIYCGLCQEACP 114
           +     I + K  CIYCG C  ACP
Sbjct: 313 KEKEAVIAVSKELCIYCGACVNACP 337



 Score = 38.5 bits (88), Expect = 0.33,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-IDMIKCIYCGLCQEACPVDAIV 119
             C  C +C   CP +AI +        G   T     +D  KC YCG+C   CP +A+ 
Sbjct: 37  NVCTGCGICSEACPKEAIVLGLVGAVRRGAVTTEAPISVDPAKCSYCGVCVILCPFNALG 96

Query: 120 EGPNFEFA 127
              + E +
Sbjct: 97  LEIDGEPS 104



 Score = 37.8 bits (86), Expect = 0.58,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 11/93 (11%)

Query: 59  GEERCIACKLCEAICPAQAITIE----------SGPRCHDGTRRTVRYDIDMIKCIYCGL 108
            E +C  C +C  +CP  AI  +           G +          + +D  KC  CG+
Sbjct: 123 DESKCNRCTVCHEVCPNDAIIRDVPTFEGVDAADGKKRQAALTGKTTFVVDKEKCTVCGI 182

Query: 109 CQEACPVDAIVEGPNFEFATETRQELYYDKERL 141
           C   CP  ++   P      ++  ++ +D E+L
Sbjct: 183 CAALCPALSVDRVPFNAETVKSLGDIVWD-EKL 214



 Score = 37.4 bits (85), Expect = 0.67,   Method: Composition-based stats.
 Identities = 20/86 (23%), Positives = 26/86 (30%), Gaps = 9/86 (10%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P E               +     + C  C  CE  CP +A+TI+              
Sbjct: 225 CPTEAIKVDRVVESNKLPGKVTIDIDNCCTCAWCENTCPTEAVTIKKFFDGEISF----- 279

Query: 96  YDIDMIKC-IYCGLCQEACPVDAIVE 120
              +  KC   C  C E CP  AI  
Sbjct: 280 ---NAEKCPAGCSTCIEVCPCKAIYL 302


>gi|158520573|ref|YP_001528443.1| nitroreductase [Desulfococcus oleovorans Hxd3]
 gi|158509399|gb|ABW66366.1| nitroreductase [Desulfococcus oleovorans Hxd3]
          Length = 345

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 7/85 (8%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           K         E A  R+   EE+C  C  C A CP Q + +  G    +      RYD  
Sbjct: 3   KKFFQSTNNPEAAFARFVLDEEKCNGCGACVAACPMQILMVADGKAAPN-----QRYDHF 57

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNF 124
             +CI C  C   CP  AIV   ++
Sbjct: 58  --RCITCQNCVATCPNKAIVIEGDY 80


>gi|116747481|ref|YP_844168.1| molybdopterin oxidoreductase Fe4S4 region [Syntrophobacter
           fumaroxidans MPOB]
 gi|116696545|gb|ABK15733.1| molybdopterin oxidoreductase Fe4S4 region [Syntrophobacter
           fumaroxidans MPOB]
          Length = 359

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 3/71 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQE 111
                  +C+ C  C   C    +                 ++   +    C+ CG C +
Sbjct: 147 MIVRDHNKCVLCGRCVRACLQVQVNGAIDVAARGSDSYITTFNNTNLMESNCVSCGQCVQ 206

Query: 112 ACPVDAIVEGP 122
           ACPV A+ E  
Sbjct: 207 ACPVGALTEKK 217


>gi|14521071|ref|NP_126546.1| hypothetical protein PAB0579 [Pyrococcus abyssi GE5]
 gi|5458288|emb|CAB49777.1| ATPase, ParA type/MinD superfamily, containing an inserted
           ferredoxin domain [Pyrococcus abyssi GE5]
          Length = 297

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 10/69 (14%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R     +      E CI C LC+  CP + I I+              Y ++ + C  C 
Sbjct: 56  REHIGAKIARINSETCIRCGLCQMRCPYECIYIDDEGN----------YVVNELTCEGCN 105

Query: 108 LCQEACPVD 116
           +C   CPV 
Sbjct: 106 VCGLVCPVP 114



 Score = 38.2 bits (87), Expect = 0.43,   Method: Composition-based stats.
 Identities = 11/42 (26%), Positives = 14/42 (33%)

Query: 82  SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           +               I+   CI CGLCQ  CP + I     
Sbjct: 50  TEWEEEREHIGAKIARINSETCIRCGLCQMRCPYECIYIDDE 91


>gi|291522098|emb|CBK80391.1| electron transport complex, RnfABCDGE type, C subunit [Coprococcus
           catus GD/7]
          Length = 442

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 18/56 (32%), Gaps = 1/56 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
               CI+C  C   CP   +            R        ++ C+ CG C   CP
Sbjct: 367 EPTACISCGRCVNACPMN-LMPTKLEAATIYKRVDDLKKYSVMTCMECGCCAFVCP 421


>gi|284162685|ref|YP_003401308.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta domain protein
           [Archaeoglobus profundus DSM 5631]
 gi|284012682|gb|ADB58635.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Archaeoglobus profundus DSM 5631]
          Length = 337

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 25/85 (29%), Gaps = 16/85 (18%)

Query: 50  EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109
              L        +C  C  C A C       E                     C +CG+C
Sbjct: 4   FEELEVDIILSGKCCYCGACGAFCKYIHYENE---------------RPVAENCEHCGVC 48

Query: 110 QEACPVDAIVEGP-NFEFATETRQE 133
            + CPV+   E     E   E R++
Sbjct: 49  YDVCPVNYFSESKAEIEIFGEKRKD 73


>gi|291614821|ref|YP_003524978.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sideroxydans
           lithotrophicus ES-1]
 gi|291584933|gb|ADE12591.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sideroxydans
           lithotrophicus ES-1]
          Length = 84

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 20/89 (22%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC------GLCQEACP 114
           + CI C +CE  CP  AI+                Y ID  KC  C        C E CP
Sbjct: 7   DECINCDVCEPECPNGAISQGD-----------TIYIIDPNKCTECVGHYDTPQCVEVCP 55

Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLN 143
           VD I   P      ET+++L    E+L+ 
Sbjct: 56  VDCIPHDPAH---VETKEQLQAKYEKLMA 81


>gi|258405500|ref|YP_003198242.1| ferredoxin-dependent glutamate synthase [Desulfohalobium retbaense
           DSM 5692]
 gi|257797727|gb|ACV68664.1| ferredoxin-dependent glutamate synthase [Desulfohalobium retbaense
           DSM 5692]
          Length = 544

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 15/80 (18%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITI--------------ESGPRCHDGTRRTVRYDID 99
            +    +++C  C  C ++CP QAI +                 P         +R   D
Sbjct: 19  WQIDWNKDKCTLCGRCTSVCPVQAIDLGVFRKREIATPLGLCGRPENSFSIFYGIRQHTD 78

Query: 100 MIK-CIYCGLCQEACPVDAI 118
             K CI C +C   CP DAI
Sbjct: 79  PAKACIGCAMCSMVCPNDAI 98



 Score = 38.2 bits (87), Expect = 0.36,   Method: Composition-based stats.
 Identities = 11/21 (52%), Positives = 11/21 (52%)

Query: 101 IKCIYCGLCQEACPVDAIVEG 121
            KC  CG C   CPV AI  G
Sbjct: 26  DKCTLCGRCTSVCPVQAIDLG 46


>gi|219854097|ref|YP_002471219.1| hypothetical protein CKR_0754 [Clostridium kluyveri NBRC 12016]
 gi|219567821|dbj|BAH05805.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 466

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 10/59 (16%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                 E C  C+ C  +CP  A           G  +     IDM KCI CG C + C
Sbjct: 10  MINIDRELCTGCRRCADVCPVDA----------IGGNKGEPQAIDMEKCIMCGQCIQIC 58



 Score = 36.2 bits (82), Expect = 1.5,   Method: Composition-based stats.
 Identities = 12/30 (40%), Positives = 14/30 (46%)

Query: 89  GTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               T   +ID   C  C  C + CPVDAI
Sbjct: 4   MWTNTPMINIDRELCTGCRRCADVCPVDAI 33


>gi|150008416|ref|YP_001303159.1| putative ferredoxin iron-sulfur protein [Parabacteroides distasonis
           ATCC 8503]
 gi|255014151|ref|ZP_05286277.1| putative ferredoxin, putative iron-sulfur protein [Bacteroides sp.
           2_1_7]
 gi|149936840|gb|ABR43537.1| putative ferredoxin, putative iron-sulfur protein [Parabacteroides
           distasonis ATCC 8503]
          Length = 262

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 11/87 (12%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
             KG+   R +G    +      + C  C+ C  +CP  AI++       D         
Sbjct: 169 EVKGNFPYRVKGPSTPQAPVTDNDLCTQCEYCVDVCPTHAISLADEGMYSD--------- 219

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNF 124
                CI C  C + CP  A      +
Sbjct: 220 --PNLCIKCCACVKECPEGARTFDTPY 244



 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 10/67 (14%), Positives = 18/67 (26%), Gaps = 4/67 (5%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           ++C  C +    +                    D+    C  C  C + CP  AI     
Sbjct: 159 VSCMECLSALEVKGNFPYRVKGPSTPQAPVTDNDL----CTQCEYCVDVCPTHAISLADE 214

Query: 124 FEFATET 130
             ++   
Sbjct: 215 GMYSDPN 221


>gi|121535200|ref|ZP_01667015.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
 gi|121306191|gb|EAX47118.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus
           carboxydivorans Nor1]
          Length = 356

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/72 (27%), Positives = 25/72 (34%), Gaps = 11/72 (15%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           + C  C+ C   CP +AI  + G              I   KCI CG C   C  DA+  
Sbjct: 194 DNCRFCQKCLKWCPQEAIIEKDGKAY-----------IMTEKCIGCGECLAVCRFDAVKY 242

Query: 121 GPNFEFATETRQ 132
               E     R 
Sbjct: 243 DWGAESGFMQRS 254


>gi|121635126|ref|YP_975371.1| iron-sulphur protein [Neisseria meningitidis FAM18]
 gi|120866832|emb|CAM10590.1| conserved hypothetical iron-sulphur protein [Neisseria meningitidis
           FAM18]
 gi|325132382|gb|EGC55075.1| iron-sulfur cluster binding protein [Neisseria meningitidis M6190]
 gi|325138437|gb|EGC61003.1| iron-sulfur cluster binding protein [Neisseria meningitidis
           ES14902]
 gi|325198571|gb|ADY94027.1| iron-sulfur cluster binding protein [Neisseria meningitidis G2136]
          Length = 484

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 18/65 (27%), Gaps = 10/65 (15%)

Query: 62  RCIACKLCEAICPA-----QAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQE 111
           +CI C  C   CP       A    + P                       C  CG C E
Sbjct: 317 QCIRCGACMNHCPVYTRIGGAAYGTTYPGPIGEIISPHLLGLDATRDLPTACTMCGACVE 376

Query: 112 ACPVD 116
            CPV 
Sbjct: 377 VCPVR 381


>gi|114773249|ref|ZP_01450484.1| oxidoreductase, FAD-binding protein [alpha proteobacterium
           HTCC2255]
 gi|114546368|gb|EAU49277.1| oxidoreductase, FAD-binding protein [alpha proteobacterium
           HTCC2255]
          Length = 943

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 8/64 (12%)

Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNG--DRWESEIVRNIVT 158
            KCI CG C+  CP   +   P    A   R       ++L   G     + + +  +  
Sbjct: 539 DKCIECGFCEPVCPSKELTFTPRQRIAIWRR------IQQLEELGYLIDAQRQELAQLKH 592

Query: 159 DSPY 162
           D  Y
Sbjct: 593 DYQY 596



 Score = 37.4 bits (85), Expect = 0.60,   Method: Composition-based stats.
 Identities = 22/103 (21%), Positives = 32/103 (31%), Gaps = 21/103 (20%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR--------------------- 91
           L R  +  ++CI C  CE +CP++ +T     R     R                     
Sbjct: 531 LPRANDIVDKCIECGFCEPVCPSKELTFTPRQRIAIWRRIQQLEELGYLIDAQRQELAQL 590

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134
           +       +  C   GLC E CPV         E   E+    
Sbjct: 591 KHDYQYYGIDTCAATGLCAERCPVGINTGDLIRELRAESHGRF 633


>gi|34540140|ref|NP_904619.1| ferredoxin [Porphyromonas gingivalis W83]
 gi|34396452|gb|AAQ65518.1| electron transport complex, RnfABCDGE type, B subunit
           [Porphyromonas gingivalis W83]
          Length = 290

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 24/84 (28%), Positives = 29/84 (34%), Gaps = 11/84 (13%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P  +         +            CI C LC   C  +AITIE+              
Sbjct: 193 PKSRRIFVSCVNKDKGGVAKKACSNACIGCSLCLKQCQFEAITIENNLSY---------- 242

Query: 97  DIDMIKCIYCGLCQEACPVDAIVE 120
            ID  KC  C  C E CP +AI E
Sbjct: 243 -IDHTKCRMCRKCVEVCPTNAIHE 265



 Score = 34.3 bits (77), Expect = 6.0,   Method: Composition-based stats.
 Identities = 14/60 (23%), Positives = 18/60 (30%), Gaps = 9/60 (15%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           C+    C   C   AI I                ++    C  CG C +ACP   I    
Sbjct: 140 CLGLGDCVDACGFDAIRINPTTLLP---------EVVEDACTACGACVKACPKSIIELRK 190


>gi|26990740|ref|NP_746165.1| dihydropyrimidine dehydrogenase [Pseudomonas putida KT2440]
 gi|24985736|gb|AAN69629.1|AE016596_7 dihydroorotate dehydrogenase family protein [Pseudomonas putida
           KT2440]
          Length = 424

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 4/65 (6%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV- 115
              +E CI C  C   C   +    +     DGT     Y +   +C+ C LCQ  CPV 
Sbjct: 339 HIDQEACIGCGRCHIACEDTSHQAIASTLKADGTHA---YSVIEEECVGCNLCQITCPVE 395

Query: 116 DAIVE 120
           + I  
Sbjct: 396 NCIEM 400


>gi|325285729|ref|YP_004261519.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Cellulophaga lytica DSM 7489]
 gi|324321183|gb|ADY28648.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Cellulophaga lytica DSM 7489]
          Length = 526

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 10/67 (14%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R +   R   NG  +CI+C  C   C           +           +I    C+ CG
Sbjct: 435 RFKSRFRITTNG-GQCISCGNCSTYCEQGIDVRAYAQKGE---------NIVRSSCVGCG 484

Query: 108 LCQEACP 114
           +C   CP
Sbjct: 485 VCSAVCP 491


>gi|320526975|ref|ZP_08028164.1| electron transport complex, RnfABCDGE type, C subunit
           [Solobacterium moorei F0204]
 gi|320132560|gb|EFW25101.1| electron transport complex, RnfABCDGE type, C subunit
           [Solobacterium moorei F0204]
          Length = 442

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 1/79 (1%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P ++     +  G    +        C+ C  C   CP+  +        H        
Sbjct: 339 VPNDQFVVMAQNNGLTIQKYEKPDTVACLRCGRCTETCPSG-LQPVRIASEHKSVDYDTL 397

Query: 96  YDIDMIKCIYCGLCQEACP 114
             +D++ CI CGLC   CP
Sbjct: 398 MRLDVMNCIECGLCTYVCP 416


>gi|307352753|ref|YP_003893804.1| coenzyme F420 hydrogenase subunit gamma [Methanoplanus petrolearius
           DSM 11571]
 gi|307155986|gb|ADN35366.1| coenzyme F420 hydrogenase, subunit gamma [Methanoplanus
           petrolearius DSM 11571]
          Length = 314

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 11/62 (17%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L      +  C+ C  C A CP +AIT+E G           R +ID   CI CG C   
Sbjct: 236 LMYDIINQGLCMGCGTCAASCPVRAITMEYG-----------RPNIDREMCIKCGACYAQ 284

Query: 113 CP 114
           CP
Sbjct: 285 CP 286



 Score = 37.0 bits (84), Expect = 0.95,   Method: Composition-based stats.
 Identities = 10/23 (43%), Positives = 13/23 (56%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVE 120
           I+   C+ CG C  +CPV AI  
Sbjct: 241 INQGLCMGCGTCAASCPVRAITM 263


>gi|258514628|ref|YP_003190850.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
            [Desulfotomaculum acetoxidans DSM 771]
 gi|257778333|gb|ACV62227.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
            [Desulfotomaculum acetoxidans DSM 771]
          Length = 1480

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 10/64 (15%)

Query: 59   GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E++C AC  C   CP     I    R            I+ ++C  CG C   CP  AI
Sbjct: 1405 DEDKCAACLTCVRTCPFGVPKINERHRA----------QIESVQCQGCGTCVGECPNKAI 1454

Query: 119  VEGP 122
                
Sbjct: 1455 QLQH 1458


>gi|227499151|ref|ZP_03929286.1| pyruvate-flavodoxin oxidoreductase [Acidaminococcus sp. D21]
 gi|226904598|gb|EEH90516.1| pyruvate-flavodoxin oxidoreductase [Acidaminococcus sp. D21]
          Length = 1167

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 24/79 (30%), Gaps = 13/79 (16%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQA------------ITIESGPRCHDGTRRTVR 95
           RG   +       E CI C  C +ICP  A             +               R
Sbjct: 674 RGIAVMVPEWQ-SEHCIQCNQCASICPHAAIRPVLLTKEEMEKSDVPAKPALGAKDLYFR 732

Query: 96  YDIDMIKCIYCGLCQEACP 114
             +  + C  C  C +ACP
Sbjct: 733 IAVSPMDCQGCRNCIDACP 751


>gi|187735463|ref|YP_001877575.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Akkermansia
           muciniphila ATCC BAA-835]
 gi|187425515|gb|ACD04794.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Akkermansia
           muciniphila ATCC BAA-835]
          Length = 588

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 2/54 (3%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           + C  C   CP +A+             R  R D     CI CG C+ ACPV A
Sbjct: 475 MDCGACTEHCPTKALYTVPYIGRDGQEHRLPRLD--PSLCIGCGACEHACPVTA 526



 Score = 39.3 bits (90), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 2/63 (3%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY-CGLCQEACPVDAIV 119
           + C  C++C A CP   +          G  +  R D     C+Y C  C E CP  AI 
Sbjct: 380 DICTGCQMCVANCPTHVLQPSYLQLGLKGFMKP-RMDFATKYCLYDCHRCAEVCPTGAIR 438

Query: 120 EGP 122
             P
Sbjct: 439 RMP 441



 Score = 33.9 bits (76), Expect = 6.7,   Method: Composition-based stats.
 Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 13/61 (21%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L R       C  C  C   C AQ + ++              Y ID  +C+ C  C  +
Sbjct: 243 LFRLGFDPASCKKCGKCVKSCKAQCLNLKE-------------YKIDSSRCVACYDCVRS 289

Query: 113 C 113
           C
Sbjct: 290 C 290


>gi|120437936|ref|YP_863622.1| iron-sulfur binding transmembrane protein [Gramella forsetii
           KT0803]
 gi|117580086|emb|CAL68555.1| iron-sulfur binding transmembrane protein [Gramella forsetii
           KT0803]
          Length = 531

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 9/53 (16%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           +CI+C  C   C           +           +I    C+ CG+C   CP
Sbjct: 451 QCISCGNCSTYCEMGIDVRAYAQKGQ---------NIVRSSCVGCGICSAVCP 494


>gi|51244101|ref|YP_063985.1| iron-sulfur proteins [Desulfotalea psychrophila LSv54]
 gi|50875138|emb|CAG34978.1| related to iron-sulfur proteins [Desulfotalea psychrophila LSv54]
          Length = 261

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 11/62 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C  C+ C ++CPA  I+   G               +   CI C  C ++CP  AI
Sbjct: 185 DSTLCNFCETCTSVCPAGIISAVEGKIL-----------FEAGDCIRCCACIKSCPTSAI 233

Query: 119 VE 120
             
Sbjct: 234 SF 235


>gi|45357945|ref|NP_987502.1| putative ATPase RIL [Methanococcus maripaludis S2]
 gi|44920702|emb|CAF29938.1| RNase L inhibitor [Methanococcus maripaludis S2]
          Length = 590

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 23/73 (31%), Gaps = 1/73 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +RC   + C   C      +              +  I    C  CG+C + CP  AI
Sbjct: 8   DYDRCQP-RRCSMECMKYCPGVRMEEETIVMDENLGKPIISEELCSGCGICTKRCPFGAI 66

Query: 119 VEGPNFEFATETR 131
                 E  T+ R
Sbjct: 67  RIIGLPEELTDDR 79


>gi|42523112|ref|NP_968492.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Bdellovibrio bacteriovorus HD100]
 gi|39575317|emb|CAE79485.1| molybdopterin oxidoreductase, iron-sulfur binding subunit
           [Bdellovibrio bacteriovorus HD100]
          Length = 1033

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 25/119 (21%), Positives = 33/119 (27%), Gaps = 19/119 (15%)

Query: 23  CLRYFFKAKTT-INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81
            L  + K K+T I +P    S                    C  C  C   C ++     
Sbjct: 754 TLADYNKKKSTGIPHPHV-WSIWSGHEYSGHKWGMAVDLHSCTGCSSCVIACQSENNIPV 812

Query: 82  SGPR-----CHDGTRRTVRYDI----------DMIKCIYCGL--CQEACPVDAIVEGPN 123
            G R           R  RY I            + C +C    C+  CPV A V    
Sbjct: 813 VGKRYVIEGREMHWLRIDRYYIGNPENAEAVFQPVMCQHCDNAPCETVCPVLATVHSDE 871


>gi|304387178|ref|ZP_07369421.1| iron-sulfur cluster-binding protein [Neisseria meningitidis ATCC
           13091]
 gi|304338745|gb|EFM04856.1| iron-sulfur cluster-binding protein [Neisseria meningitidis ATCC
           13091]
          Length = 484

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 18/65 (27%), Gaps = 10/65 (15%)

Query: 62  RCIACKLCEAICPA-----QAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQE 111
           +CI C  C   CP       A    + P                       C  CG C E
Sbjct: 317 QCIRCGACMNHCPVYTRIGGAAYGTTYPGPIGEIISPHLLGLDATRDLPTACTMCGACVE 376

Query: 112 ACPVD 116
            CPV 
Sbjct: 377 VCPVR 381


>gi|297617707|ref|YP_003702866.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Syntrophothermus lipocalidus DSM 12680]
 gi|297145544|gb|ADI02301.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Syntrophothermus lipocalidus DSM 12680]
          Length = 279

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTR-RTVRYDIDMIKCIY--CGLCQEACPV 115
            ++ CI C  C  +CP  AI    G    +  R   +   I++ +     CG+C + CPV
Sbjct: 175 EKDLCIQCGACARLCPVNAIIPVEGSVAGNFDREACLERHIELTRKKRYPCGICTKVCPV 234



 Score = 37.0 bits (84), Expect = 0.88,   Method: Composition-based stats.
 Identities = 11/22 (50%), Positives = 13/22 (59%)

Query: 97  DIDMIKCIYCGLCQEACPVDAI 118
            I+   CI CG C   CPV+AI
Sbjct: 173 MIEKDLCIQCGACARLCPVNAI 194


>gi|282879123|ref|ZP_06287882.1| 4Fe-4S binding domain protein [Prevotella buccalis ATCC 35310]
 gi|281298765|gb|EFA91175.1| 4Fe-4S binding domain protein [Prevotella buccalis ATCC 35310]
          Length = 503

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 6/67 (8%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC---PVDAIVE 120
           + C  C   CPA AIT+      +   +      ++  +CI CG C+  C   P  AI  
Sbjct: 437 VECGNCARHCPAGAITMVPSKASNP--KSPKIPAVNTERCIGCGACENQCPARPFSAIY- 493

Query: 121 GPNFEFA 127
              +E  
Sbjct: 494 VEGYEMH 500



 Score = 38.2 bits (87), Expect = 0.39,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 23/92 (25%), Gaps = 4/92 (4%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
             P +    S                     C  C  +CP  AI   +            
Sbjct: 364 QCPNDVLRPSTDLMKLMQPTMSFERGYCHPGCTRCSNVCPTGAIRPITRTAKSATQIGHA 423

Query: 95  RY----DIDMIKCIYCGLCQEACPVDAIVEGP 122
            +     I +   + CG C   CP  AI   P
Sbjct: 424 VWVKKNCIPLTDGVECGNCARHCPAGAITMVP 455



 Score = 37.4 bits (85), Expect = 0.65,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 13/93 (13%)

Query: 47  FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
           F    +L        +C  C LC   C A  I  ++               ID  +C+ C
Sbjct: 210 FISRFSLLHPVLDAGKCTKCSLCAHRCKAACIDYKNHK-------------IDYSRCVAC 256

Query: 107 GLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139
             C + C  DA+     +     + ++     +
Sbjct: 257 MDCIDTCQHDALHLQWRWNDMNRSNEDKIVKAD 289


>gi|257092939|ref|YP_003166580.1| methyl-viologen-reducing hydrogenase subunit delta [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257045463|gb|ACV34651.1| methyl-viologen-reducing hydrogenase delta subunit [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 523

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 4/56 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
               C  C  C A CP  AI +   PR            +D   C  CG+C  +CP
Sbjct: 299 DAANCTGCDRCLADCPYAAIAMRPHPRRPG----LKLAVVDADLCAGCGICAGSCP 350



 Score = 33.9 bits (76), Expect = 7.8,   Method: Composition-based stats.
 Identities = 8/22 (36%), Positives = 8/22 (36%)

Query: 101 IKCIYCGLCQEACPVDAIVEGP 122
             C  C  C   CP  AI   P
Sbjct: 301 ANCTGCDRCLADCPYAAIAMRP 322


>gi|218510340|ref|ZP_03508218.1| NADH-ubiquinone oxidoreductase protein, chain G [Rhizobium etli
           Brasil 5]
          Length = 200

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 3/78 (3%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
            ++   S   R    +    N   RCI C+ C  +C      +  G            ++
Sbjct: 126 DKRVFHSEDIRLSPVIIMNVN---RCIQCQRCVRMCEEVVGAVALGTIEKGMDTAVTGFE 182

Query: 98  IDMIKCIYCGLCQEACPV 115
             +  C  CG C E CPV
Sbjct: 183 GSLASCDQCGNCVEVCPV 200


>gi|149194115|ref|ZP_01871213.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Caminibacter
           mediatlanticus TB-2]
 gi|149136068|gb|EDM24546.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Caminibacter
           mediatlanticus TB-2]
          Length = 545

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 11/80 (13%)

Query: 40  KGSTSPRFRGEHALRRY-PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
           K     ++ G +    Y    +++C  C  C  +C A A   +                 
Sbjct: 396 KDYVDLKYEGNYIHYGYVKIDDKKCTLCMSCATVCNAGAFIADEKGALIFDATY------ 449

Query: 99  DMIKCIYCGLCQEACPVDAI 118
               C  CG C+ ACP   I
Sbjct: 450 ----CTDCGYCEVACPEKCI 465



 Score = 39.7 bits (91), Expect = 0.15,   Method: Composition-based stats.
 Identities = 14/58 (24%), Positives = 19/58 (32%), Gaps = 9/58 (15%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           C  C  +CP  AI  +   +    +            C  CG C   CPV A+     
Sbjct: 207 CGNCADVCPTNAILKDDESKELIFSHI---------DCDGCGGCVSVCPVGALDFTQI 255


>gi|83718922|ref|YP_442160.1| formate dehydrogenase subunit alpha [Burkholderia thailandensis
           E264]
 gi|167619114|ref|ZP_02387745.1| formate dehydrogenase, alpha subunit [Burkholderia thailandensis
           Bt4]
 gi|257138349|ref|ZP_05586611.1| formate dehydrogenase, alpha subunit [Burkholderia thailandensis
           E264]
 gi|83652747|gb|ABC36810.1| formate dehydrogenase, alpha subunit [Burkholderia thailandensis
           E264]
          Length = 984

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/85 (20%), Positives = 25/85 (29%), Gaps = 10/85 (11%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     +          +        +C+ CG C  
Sbjct: 187 YFSYDPAKCIVCNRCVRACEETQGTFALTIAARGFDSRVAASAGDAFMDSECVSCGACVA 246

Query: 112 ACPVDAIVE-------GPNFEFATE 129
           ACP   ++E        P  E  T 
Sbjct: 247 ACPTATLIEKSVARLGQPEHEVVTT 271


>gi|148547035|ref|YP_001267137.1| dihydropyrimidine dehydrogenase [Pseudomonas putida F1]
 gi|148511093|gb|ABQ77953.1| dihydropyrimidine dehydrogenase (NADP+) / dihydrouracil
           dehydrogenase (NAD+) [Pseudomonas putida F1]
          Length = 424

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 4/65 (6%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV- 115
              +E CI C  C   C   +    +     DGT     Y +   +C+ C LCQ  CPV 
Sbjct: 339 HIDQEACIGCGRCHIACEDTSHQAIASTLKADGTHA---YSVIEEECVGCNLCQITCPVE 395

Query: 116 DAIVE 120
           + I  
Sbjct: 396 NCIEM 400


>gi|332883767|gb|EGK04047.1| hypothetical protein HMPREF9456_01075 [Dysgonomonas mossii DSM
           22836]
          Length = 514

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 23/83 (27%), Positives = 31/83 (37%), Gaps = 13/83 (15%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV---DAIVE 120
             C  C   CP QA+T+        G        I    C+ CG C+  CPV    AI  
Sbjct: 432 TNCGACAEHCPTQAVTMIPYE----GHEGLTIPFITPDICVGCGGCEYICPVRPYRAIYV 487

Query: 121 GPNFE------FATETRQELYYD 137
             N E      F  E ++++  D
Sbjct: 488 EGNKEHKQRKAFKEEKKEDVVID 510



 Score = 40.5 bits (93), Expect = 0.074,   Method: Composition-based stats.
 Identities = 20/88 (22%), Positives = 28/88 (31%), Gaps = 5/88 (5%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIA-CKLCEAICPAQAIT--IESGPRCHDGTRRTVRY 96
           K +      G          +  C   C +C  +CP+ A+              R T   
Sbjct: 363 KPAFMEYGLGGMMQPMMNYDKGFCNYNCTVCSDVCPSHALKSLTMEEKHMTQIGRVTFHE 422

Query: 97  DID--MIKCIYCGLCQEACPVDAIVEGP 122
           DI     +   CG C E CP  A+   P
Sbjct: 423 DICVVHTEGTNCGACAEHCPTQAVTMIP 450



 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 13/78 (16%)

Query: 47  FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
           F  + +L +    E  C +C  C   C A  I                 + +D  +C+ C
Sbjct: 212 FLSKFSLFKIRINESLCNSCGSCATKCKASCIDS-------------KNHAVDYTRCVDC 258

Query: 107 GLCQEACPVDAIVEGPNF 124
             C  +C  +AI   P+F
Sbjct: 259 FNCLSSCSKNAITFSPSF 276


>gi|323701421|ref|ZP_08113095.1| hydrogenase, Fe-only [Desulfotomaculum nigrificans DSM 574]
 gi|323533680|gb|EGB23545.1| hydrogenase, Fe-only [Desulfotomaculum nigrificans DSM 574]
          Length = 521

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 10/67 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +++CI C  C   C           +             D I C+ CG C   CP  AI
Sbjct: 76  DDKKCILCGQCIEAC----------EKVQTVMGYYELPIKDDITCVNCGQCTLWCPTGAI 125

Query: 119 VEGPNFE 125
            E  + +
Sbjct: 126 TERDDID 132


>gi|323703144|ref|ZP_08114798.1| molybdopterin oxidoreductase [Desulfotomaculum nigrificans DSM 574]
 gi|323531921|gb|EGB21806.1| molybdopterin oxidoreductase [Desulfotomaculum nigrificans DSM 574]
          Length = 349

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 3/68 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV---RYDIDMIKCIYCGLCQE 111
            +   + +CI C  C  +C              +G +R        +    C++CG C  
Sbjct: 139 FFERDQSKCILCGKCVQVCNEIVGAGAIQMVEINGVKRITPTSENTLHGTSCLFCGNCSS 198

Query: 112 ACPVDAIV 119
            CPV A+ 
Sbjct: 199 VCPVGALN 206


>gi|296110016|ref|YP_003616965.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Methanocaldococcus infernus ME]
 gi|295434830|gb|ADG14001.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Methanocaldococcus infernus ME]
          Length = 613

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 11/64 (17%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
            +YP   + C  C  C  +C  + I I        G+     Y+I    CI CG C +AC
Sbjct: 486 VKYPKVNDNCNGCGRCYEVCKLECIYI-------RGSYSYTNYNI----CIGCGKCIKAC 534

Query: 114 PVDA 117
           P +A
Sbjct: 535 PNEA 538



 Score = 34.3 bits (77), Expect = 6.4,   Method: Composition-based stats.
 Identities = 11/56 (19%), Positives = 20/56 (35%)

Query: 75  AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
           +   +     + HD     V+Y      C  CG C E C ++ I    ++ +    
Sbjct: 467 SGCPSSCIRAQIHDIGIIGVKYPKVNDNCNGCGRCYEVCKLECIYIRGSYSYTNYN 522


>gi|313124853|ref|YP_004035117.1| ferredoxin [Halogeometricum borinquense DSM 11551]
 gi|312291218|gb|ADQ65678.1| ferredoxin [Halogeometricum borinquense DSM 11551]
          Length = 106

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 27/78 (34%), Gaps = 2/78 (2%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100
           G   P  +            + C+A   C   CP    T    P      ++        
Sbjct: 24  GPVEPPEKLGIHGTHVAVDYDICLADGACLENCPVDVFTWVDTPDHPVSEQKVEPTR--E 81

Query: 101 IKCIYCGLCQEACPVDAI 118
            +CI C LC + CPVDAI
Sbjct: 82  DQCIDCMLCVDICPVDAI 99


>gi|225386321|ref|ZP_03756085.1| hypothetical protein CLOSTASPAR_00064 [Clostridium asparagiforme
           DSM 15981]
 gi|225047600|gb|EEG57846.1| hypothetical protein CLOSTASPAR_00064 [Clostridium asparagiforme
           DSM 15981]
          Length = 56

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 11/62 (17%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            + C++C  C A CP  AI+               +Y ID   CI CG C   CP  AI 
Sbjct: 6   NDSCVSCGSCAAECPVGAISEGD-----------SQYVIDADTCIDCGTCAGTCPTGAIS 54

Query: 120 EG 121
           EG
Sbjct: 55  EG 56


>gi|210620573|ref|ZP_03292121.1| hypothetical protein CLOHIR_00064 [Clostridium hiranonis DSM 13275]
 gi|210155287|gb|EEA86293.1| hypothetical protein CLOHIR_00064 [Clostridium hiranonis DSM 13275]
          Length = 298

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 11/67 (16%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           + + +C  C  C   CP  AIT E                I+  KC+ C  C  +CP  A
Sbjct: 50  HDQSKCSYCLSCVVTCPNGAITHEDNKII-----------INEDKCVGCLTCVNSCPNRA 98

Query: 118 IVEGPNF 124
           +    ++
Sbjct: 99  LSYEGDY 105


>gi|168180404|ref|ZP_02615068.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum NCTC
           2916]
 gi|182668801|gb|EDT80779.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum NCTC
           2916]
          Length = 574

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 11/77 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +         C  C  C   CP +AI  ++              +I   +CI CG C   
Sbjct: 1   MNYIDISGLNCKNCYKCLRACPVKAIKFKNEKA-----------EIVEERCISCGRCLVI 49

Query: 113 CPVDAIVEGPNFEFATE 129
           CP +A  + P+ ++  +
Sbjct: 50  CPQNAKKDKPDIKYVKD 66


>gi|153810352|ref|ZP_01963020.1| hypothetical protein RUMOBE_00733 [Ruminococcus obeum ATCC 29174]
 gi|149833531|gb|EDM88612.1| hypothetical protein RUMOBE_00733 [Ruminococcus obeum ATCC 29174]
          Length = 321

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 24/75 (32%), Gaps = 12/75 (16%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--DMIKC 103
              G   +        RC++C  C   C           +      +   Y I  +  KC
Sbjct: 155 HDFGIIGMTEPQYDPNRCVSCGACVKGCD----------KLSVDALKMENYRIVRNEEKC 204

Query: 104 IYCGLCQEACPVDAI 118
           + CG+C   CP  A 
Sbjct: 205 VGCGVCVTKCPTRAW 219


>gi|149201032|ref|ZP_01878007.1| dihydropyrimidine dehydrogenase [Roseovarius sp. TM1035]
 gi|149145365|gb|EDM33391.1| dihydropyrimidine dehydrogenase [Roseovarius sp. TM1035]
          Length = 434

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/63 (22%), Positives = 20/63 (31%), Gaps = 8/63 (12%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP-VDA 117
            ++ CI C  C A C       E              + +   +C+ C LC   CP    
Sbjct: 343 NQDDCIKCGRCYAAC-------EDTSHQAIAMSEDRVFTVKDDECVACNLCVNVCPIEGC 395

Query: 118 IVE 120
           I  
Sbjct: 396 ITM 398


>gi|172059962|ref|YP_001807614.1| formate dehydrogenase subunit alpha [Burkholderia ambifaria MC40-6]
 gi|171992479|gb|ACB63398.1| formate dehydrogenase, alpha subunit [Burkholderia ambifaria
           MC40-6]
          Length = 983

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 20/69 (28%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     +                   +C+ CG C  
Sbjct: 187 YFAYDPSKCIVCNRCVRACEETQGTFALTIAARGFESRVAAGESESFMASECVSCGACVA 246

Query: 112 ACPVDAIVE 120
           ACP   + E
Sbjct: 247 ACPTATLQE 255


>gi|86134455|ref|ZP_01053037.1| iron-sulfur cluster-binding protein [Polaribacter sp. MED152]
 gi|85821318|gb|EAQ42465.1| iron-sulfur cluster-binding protein [Polaribacter sp. MED152]
          Length = 540

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 10/67 (14%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R +   R   NG  +CI+C  C   C           +           +I    C+ CG
Sbjct: 449 RFKSRFRITTNG-GQCISCGNCSTYCEQGIDVRAYAQKGE---------NIVRSSCVGCG 498

Query: 108 LCQEACP 114
           +C   CP
Sbjct: 499 ICSAVCP 505


>gi|332296330|ref|YP_004438253.1| hydrogenase, Fe-only [Thermodesulfobium narugense DSM 14796]
 gi|332179433|gb|AEE15122.1| hydrogenase, Fe-only [Thermodesulfobium narugense DSM 14796]
          Length = 590

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 5/69 (7%)

Query: 59  GEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
              +CI C+ C   C       A+ +           +     I   +C+ CG C   CP
Sbjct: 150 DPNKCILCQRCITACRVLQTVDALELYGNGYDAVVRPKGGLPLI-ETQCVACGQCALVCP 208

Query: 115 VDAIVEGPN 123
             AI+E  +
Sbjct: 209 TGAILEKDD 217


>gi|325921027|ref|ZP_08182908.1| electron transport complex, RnfABCDGE type, B subunit [Xanthomonas
           gardneri ATCC 19865]
 gi|325548476|gb|EGD19449.1| electron transport complex, RnfABCDGE type, B subunit [Xanthomonas
           gardneri ATCC 19865]
          Length = 143

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 30/86 (34%), Gaps = 11/86 (12%)

Query: 39  EKGSTSPRFRGEHAL-RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97
                  R RG H L +     E  CI C  C   CP  AI          G  + +   
Sbjct: 67  VPARPYDRTRGTHTLPQVAWIVEADCIGCTKCIQACPVDAIV---------GGAKHMHTV 117

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPN 123
           I  + C  C LC  ACPVD I     
Sbjct: 118 IAPL-CTGCELCLPACPVDCIELHTI 142


>gi|310780590|ref|YP_003968921.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ilyobacter
           polytropus DSM 2926]
 gi|309749913|gb|ADO84573.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ilyobacter
           polytropus DSM 2926]
          Length = 59

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 10/65 (15%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
             Y   E+ CIAC  CE +CP + I+   G +            ID   CI CG C   C
Sbjct: 1   MSYRINEDECIACGACEPVCPVECISEVEGGKR----------RIDEAVCIDCGACAGVC 50

Query: 114 PVDAI 118
           PVD I
Sbjct: 51  PVDCI 55


>gi|304310596|ref|YP_003810194.1| 2-ketoglutarate: NADP oxidoreductase, gamma subunit [gamma
           proteobacterium HdN1]
 gi|301796329|emb|CBL44537.1| 2-ketoglutarate: NADP oxidoreductase, gamma subunit [gamma
           proteobacterium HdN1]
          Length = 592

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/84 (22%), Positives = 23/84 (27%), Gaps = 22/84 (26%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHD----------------------GTRRTVRYDI 98
           ERCI C  C  +CP   I                                  +       
Sbjct: 499 ERCIECDACVDVCPVDCINFLENDEEEALRQNLRIPAANLTQSLYVSGDLPNQTGRIMVK 558

Query: 99  DMIKCIYCGLCQEACPVDAIVEGP 122
           D   C++CGLC E CP  A     
Sbjct: 559 DENVCLHCGLCAERCPTAAWDMQK 582



 Score = 39.3 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 13/25 (52%)

Query: 101 IKCIYCGLCQEACPVDAIVEGPNFE 125
            +CI C  C + CPVD I    N E
Sbjct: 499 ERCIECDACVDVCPVDCINFLENDE 523


>gi|283851797|ref|ZP_06369075.1| Cobyrinic acid ac-diamide synthase [Desulfovibrio sp. FW1012B]
 gi|283572917|gb|EFC20899.1| Cobyrinic acid ac-diamide synthase [Desulfovibrio sp. FW1012B]
          Length = 296

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 21/64 (32%), Gaps = 10/64 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + C  C LC  +C   A+      +            ID  +C  C  C   CP  AI
Sbjct: 64  DPDLCDGCGLCRDLCRFDAVATTPDGQ----------CAIDPHRCEGCNTCVALCPRQAI 113

Query: 119 VEGP 122
              P
Sbjct: 114 AFLP 117


>gi|258405609|ref|YP_003198351.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfohalobium retbaense DSM 5692]
 gi|257797836|gb|ACV68773.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfohalobium retbaense DSM 5692]
          Length = 324

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 21/67 (31%), Gaps = 10/67 (14%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
                 +  C  C  C   C   AI                   +D  KC+ CG+C   C
Sbjct: 241 ICRVAEDSACTQCGQCVRKCQFAAIVENVAG----------TVTVDAEKCMGCGVCVNNC 290

Query: 114 PVDAIVE 120
           P  A+V 
Sbjct: 291 PTGALVL 297


>gi|254443050|ref|ZP_05056526.1| cytochrome c oxidase accessory protein CcoG [Verrucomicrobiae
           bacterium DG1235]
 gi|198257358|gb|EDY81666.1| cytochrome c oxidase accessory protein CcoG [Verrucomicrobiae
           bacterium DG1235]
          Length = 475

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/127 (14%), Positives = 28/127 (22%), Gaps = 16/127 (12%)

Query: 4   FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYP---FEKGSTSPRFRGEHALRRYPNGE 60
           F   +             L L + F A   ++ P                          
Sbjct: 154 FERIIKRSLKHVIFAGLSLALAHMFMAYF-VSVPGLWKMMQEAPAENWKVFVFVFAYAAV 212

Query: 61  ERCIACKLCEAICPAQA------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
                    E +C                 ++  G     G  R    D++   CI C  
Sbjct: 213 LYFNFAWFREQLCIVICPYGRLQSALIDEHSMVIGYDEKRGEPRGKAKDVNAGDCIDCNR 272

Query: 109 CQEACPV 115
           C + CP 
Sbjct: 273 CVQVCPT 279



 Score = 35.8 bits (81), Expect = 1.9,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 20/69 (28%), Gaps = 16/69 (23%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
              RGE   +        CI C  C  +CP                          ++CI
Sbjct: 249 DEKRGEPRGKAKDVNAGDCIDCNRCVQVCPTG----------------IDIRQGLQMECI 292

Query: 105 YCGLCQEAC 113
            C  C +AC
Sbjct: 293 GCSACIDAC 301


>gi|124028230|ref|YP_001013550.1| hypothetical protein Hbut_1380 [Hyperthermus butylicus DSM 5456]
 gi|123978924|gb|ABM81205.1| hypothetical protein Hbut_1380 [Hyperthermus butylicus DSM 5456]
          Length = 342

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 22/70 (31%), Gaps = 3/70 (4%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTR---RTVRYDIDMIKCIYCGLCQEAC 113
            +   RCI C LC   C              DG          ++    C  C  C + C
Sbjct: 111 KDFYARCIRCGLCYYACNYMGYHAIRLAGLRDGFSLLGAPTLDNLLTNPCTLCMECVKVC 170

Query: 114 PVDAIVEGPN 123
           P  A+ E P 
Sbjct: 171 PTGALAETPE 180



 Score = 37.0 bits (84), Expect = 0.95,   Method: Composition-based stats.
 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 66  CKLCEAICPAQAITIE---SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP--VDAIVE 120
           CK C   CP  +   E   +    H   +  V  D  +  C  CGLC +ACP    AI  
Sbjct: 202 CKSCAKACPYGSEVFEFTFNEWGIHTRVKAKVVGDKVVTPCRGCGLCVQACPIGGSAIHI 261

Query: 121 GPNFEF 126
            P  E+
Sbjct: 262 LPRDEY 267


>gi|117619324|ref|YP_856034.1| putative glutamate synthase (NADPH) small subunit [Aeromonas
           hydrophila subsp. hydrophila ATCC 7966]
 gi|117560731|gb|ABK37679.1| pyridine nucleotide-disulphide oxidoreductase family protein
           [Aeromonas hydrophila subsp. hydrophila ATCC 7966]
          Length = 548

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 20/69 (28%), Gaps = 3/69 (4%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
                RC +C  C               +        + Y +D   C  CG C + CP  
Sbjct: 481 RYEAARCYSCGNCFEC---DGCYGSCPEQAIAKLGPGLGYQVDAELCTGCGACHDQCPCH 537

Query: 117 AIVEGPNFE 125
           AI      E
Sbjct: 538 AIELRQPEE 546


>gi|134298338|ref|YP_001111834.1| hydrogenase [Desulfotomaculum reducens MI-1]
 gi|134051038|gb|ABO49009.1| hydrogenase, Fe-only [Desulfotomaculum reducens MI-1]
          Length = 520

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 10/67 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +++CI C  C  +C           R             + I C+ CG C   CP  AI
Sbjct: 79  DDKKCILCGQCIEVCQ----------RVQTVYGYYELPIKNDITCVNCGQCTLWCPTAAI 128

Query: 119 VEGPNFE 125
            E  + +
Sbjct: 129 TERDDID 135


>gi|332560639|ref|ZP_08414957.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Rhodobacter sphaeroides WS8N]
 gi|332274437|gb|EGJ19753.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Rhodobacter sphaeroides WS8N]
          Length = 469

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 24/68 (35%), Gaps = 16/68 (23%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
            +RGE   +R   G   CI C  C  +CP      E                     CI 
Sbjct: 234 DWRGEPRGKRSETGRGDCIDCMACVNVCPMGIDIREGQQMA----------------CIT 277

Query: 106 CGLCQEAC 113
           CGLC +AC
Sbjct: 278 CGLCIDAC 285



 Score = 34.3 bits (77), Expect = 6.0,   Method: Composition-based stats.
 Identities = 15/58 (25%), Positives = 18/58 (31%), Gaps = 6/58 (10%)

Query: 61  ERCIACKLCEAICPAQAITIES----GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           + CI    C       A+  E       R   G  R  R +     CI C  C   CP
Sbjct: 207 QICIY--ACPWPRIQAALMDEETITVAYRDWRGEPRGKRSETGRGDCIDCMACVNVCP 262


>gi|331001666|ref|ZP_08325189.1| hypothetical protein HMPREF0491_00051 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330413387|gb|EGG92754.1| hypothetical protein HMPREF0491_00051 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 271

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 28/90 (31%), Gaps = 11/90 (12%)

Query: 30  AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89
            K     P++  +       +         E  CIAC LC   C   AI +         
Sbjct: 183 KKLIDLVPYDTFTFVQCNSQDKGKAVKEVCEVGCIACTLCVKACEDDAIHMNGNVAL--- 239

Query: 90  TRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
                   ID  KCI CG C   CP   I 
Sbjct: 240 --------IDYSKCINCGKCAAKCPTKVIQ 261



 Score = 37.8 bits (86), Expect = 0.48,   Method: Composition-based stats.
 Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGP-----RCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
             E+C+AC  C   CP + I +         +C+   +     ++  + CI C LC +AC
Sbjct: 167 DREKCVACGKCVEACPKKLIDLVPYDTFTFVQCNSQDKGKAVKEVCEVGCIACTLCVKAC 226

Query: 114 PVDAIVEGPNFEFATETR 131
             DAI    N      ++
Sbjct: 227 EDDAIHMNGNVALIDYSK 244



 Score = 36.6 bits (83), Expect = 1.0,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 11/64 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C+    C  +C   +I I  G              +D  KC+ CG C EACP   I
Sbjct: 138 CSYGCMGFGSCVKVCEFDSIHIVDGIAL-----------VDREKCVACGKCVEACPKKLI 186

Query: 119 VEGP 122
              P
Sbjct: 187 DLVP 190


>gi|313886233|ref|ZP_07819962.1| electron transport complex, RnfABCDGE type, C subunit
           [Porphyromonas asaccharolytica PR426713P-I]
 gi|312924304|gb|EFR35084.1| electron transport complex, RnfABCDGE type, C subunit
           [Porphyromonas asaccharolytica PR426713P-I]
          Length = 450

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 13/56 (23%), Positives = 18/56 (32%), Gaps = 1/56 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
               CI C  C ++CP                  +  ++     CI CG C   CP
Sbjct: 371 EMHDCIRCGKCVSVCPMGLNPAFLMRDTIYKDWESTEHNYIAD-CIECGSCSYTCP 425


>gi|301648114|ref|ZP_07247874.1| putative ferredoxin-type protein NapF [Escherichia coli MS 146-1]
 gi|301073787|gb|EFK88593.1| putative ferredoxin-type protein NapF [Escherichia coli MS 146-1]
          Length = 176

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 37/114 (32%), Gaps = 9/114 (7%)

Query: 12  FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71
           + +E +   ++  R  F+A  +   P              AL        +C  C LC  
Sbjct: 7   YYQELMSHRYVSRRGLFRAFVSAARPVTTPILPVHSLPPGAL-PDAQFRVQCTQCDLCIN 65

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
            CP   +                +  I+   C  CGLC  AC  +A+     F+
Sbjct: 66  ACPMGILNRHEDGYP--------QLVIEFASCDGCGLCIAACSTEALRPQARFD 111


>gi|299531030|ref|ZP_07044443.1| electron transport complex, RnfABCDGE type, B subunit [Comamonas
           testosteroni S44]
 gi|298720987|gb|EFI61931.1| electron transport complex, RnfABCDGE type, B subunit [Comamonas
           testosteroni S44]
          Length = 220

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/60 (30%), Positives = 20/60 (33%), Gaps = 10/60 (16%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           CI C LC   CP  AI   +               +    C  C LC   CPVD I    
Sbjct: 90  CIGCTLCIKACPTDAILGANKRMHS----------VIAEHCTGCELCIPVCPVDCIELVN 139



 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 13/21 (61%), Positives = 14/21 (66%)

Query: 98  IDMIKCIYCGLCQEACPVDAI 118
           ID   CI C LC +ACP DAI
Sbjct: 85  IDEAWCIGCTLCIKACPTDAI 105


>gi|297568802|ref|YP_003690146.1| formate dehydrogenase, alpha subunit [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296924717|gb|ADH85527.1| formate dehydrogenase, alpha subunit [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 1414

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 1/66 (1%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           R       +CI C+ C   C   A+ + +     +G    +        C+ CG C + C
Sbjct: 637 RAIDIDPNKCIYCQRCINSCEYDALELSATSLDEEGRPEGLVLR-FKDNCVSCGKCVDNC 695

Query: 114 PVDAIV 119
              A+ 
Sbjct: 696 STGALN 701



 Score = 33.9 bits (76), Expect = 6.6,   Method: Composition-based stats.
 Identities = 22/112 (19%), Positives = 33/112 (29%), Gaps = 7/112 (6%)

Query: 17  VGAFFLCLRY-FFKAKTTIN---YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72
                  LR    +    +    +   K   + +     A R    G      C+L E  
Sbjct: 553 FEGLETRLREKMPQRPHEVCRQDFDEVKLGFTDKMARREADRCLSCGCTAFDRCRLKELD 612

Query: 73  CPAQAITIESGPRCHDGTRRTVRY---DIDMIKCIYCGLCQEACPVDAIVEG 121
                   ++G            +   DID  KCIYC  C  +C  DA+   
Sbjct: 613 IDYNVNLSKTGMGTVPVYPIDTSHRAIDIDPNKCIYCQRCINSCEYDALELS 664


>gi|289422180|ref|ZP_06424037.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Peptostreptococcus anaerobius 653-L]
 gi|289157406|gb|EFD06014.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Peptostreptococcus anaerobius 653-L]
          Length = 595

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 10/63 (15%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           Y   +++CI CK C           ++G           +  ID+ KC+ C +C + CPV
Sbjct: 538 YRVDQDKCIGCKKC----------TKTGCPAISFKTDIKKSSIDINKCVGCSVCAQVCPV 587

Query: 116 DAI 118
            AI
Sbjct: 588 GAI 590


>gi|257459815|ref|ZP_05624921.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Campylobacter
           gracilis RM3268]
 gi|257442667|gb|EEV17804.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Campylobacter
           gracilis RM3268]
          Length = 1193

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 32/135 (23%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------------QA 77
           F+ G+T    RG   +      +  CI C  C  +CP                     + 
Sbjct: 668 FDAGTTRFEKRGVGVVVPKWIEQN-CIQCNQCAFVCPHAVIRAFLLDEKDEAAAPLNLKD 726

Query: 78  ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP--VDAIVEGP-NFEFATETRQ-- 132
             +E+  +   G +   +  +  + C  C LC E CP    ++V  P   E A   ++  
Sbjct: 727 HLLEAKGKELKGLKY--KIQVSPLDCTGCALCAENCPSKEKSLVMVPLEEELAKGEQESA 784

Query: 133 ELYYD----KERLLN 143
           +  ++    K+ L++
Sbjct: 785 DFLFEHVRYKDDLMD 799


>gi|254672439|emb|CBA05819.1| conserved hypothetical iron-sulphur protein [Neisseria meningitidis
           alpha275]
          Length = 438

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 18/65 (27%), Gaps = 10/65 (15%)

Query: 62  RCIACKLCEAICPA-----QAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQE 111
           +CI C  C   CP       A    + P                       C  CG C E
Sbjct: 271 QCIRCGACMNHCPVYTRIGGAAYGTTYPGPIGEIISPHLLGLDATRDLPTACTMCGACVE 330

Query: 112 ACPVD 116
            CPV 
Sbjct: 331 VCPVR 335


>gi|168184888|ref|ZP_02619552.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum Bf]
 gi|182672047|gb|EDT84008.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum Bf]
          Length = 574

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 11/77 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +         C  C  C   CP +AI  ++              +I   +CI CG C   
Sbjct: 1   MNYIDISGLNCKNCYKCLRACPVKAIKFKNEKA-----------EIVEERCISCGRCLVI 49

Query: 113 CPVDAIVEGPNFEFATE 129
           CP +A  + P+ ++  +
Sbjct: 50  CPQNAKKDKPDIKYVKD 66


>gi|163857998|ref|YP_001632296.1| NAD-dependent formate dehydrogenase alpha subunit [Bordetella
           petrii DSM 12804]
 gi|163261726|emb|CAP44028.1| NAD-dependent formate dehydrogenase alpha subunit [Bordetella
           petrii]
          Length = 958

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 22/69 (31%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     SG                  +C+ CG C +
Sbjct: 162 YFSYDPSKCIVCNRCVRACEETQGTFALTISGKGFDSRVAAGQSQPFLDSECVSCGACVQ 221

Query: 112 ACPVDAIVE 120
           ACP   + E
Sbjct: 222 ACPTSTLQE 230


>gi|121533900|ref|ZP_01665726.1| Cobyrinic acid a,c-diamide synthase [Thermosinus carboxydivorans
           Nor1]
 gi|121307411|gb|EAX48327.1| Cobyrinic acid a,c-diamide synthase [Thermosinus carboxydivorans
           Nor1]
          Length = 288

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/102 (19%), Positives = 26/102 (25%), Gaps = 19/102 (18%)

Query: 28  FKAKTTINYPFEKGSTSPRFRGEHALRRYPN--------GEERCIACKLCEAICPAQAIT 79
            +   T+     +             +               RC  C  C  +C   AI 
Sbjct: 24  VRPGVTVADCDVEEPNCHLLLAPTWHQPDEEITVMTPVLDAGRCTGCGRCSEVCMFNAIA 83

Query: 80  IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
           I                 I    C  CG C  ACP  A+ EG
Sbjct: 84  IAGDKAV-----------IFDELCHSCGGCILACPASALAEG 114


>gi|146303291|ref|YP_001190607.1| pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta
           [Metallosphaera sedula DSM 5348]
 gi|145701541|gb|ABP94683.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit
           [Metallosphaera sedula DSM 5348]
          Length = 88

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 10/65 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++C  C+LC   C    I +E                ID   C  CG+C + CP  AI
Sbjct: 32  HYDKCTRCRLCFFYCVENTIDLEKNLYP----------RIDYDYCKGCGVCAQVCPTAAI 81

Query: 119 VEGPN 123
                
Sbjct: 82  EMIKE 86


>gi|59801304|ref|YP_208016.1| hypothetical protein NGO0906 [Neisseria gonorrhoeae FA 1090]
 gi|239998855|ref|ZP_04718779.1| hypothetical protein Ngon3_05146 [Neisseria gonorrhoeae 35/02]
 gi|240014230|ref|ZP_04721143.1| hypothetical protein NgonD_06232 [Neisseria gonorrhoeae DGI18]
 gi|240016666|ref|ZP_04723206.1| hypothetical protein NgonFA_05798 [Neisseria gonorrhoeae FA6140]
 gi|240080855|ref|ZP_04725398.1| hypothetical protein NgonF_06031 [Neisseria gonorrhoeae FA19]
 gi|240112781|ref|ZP_04727271.1| hypothetical protein NgonM_04217 [Neisseria gonorrhoeae MS11]
 gi|240115532|ref|ZP_04729594.1| hypothetical protein NgonPID1_04665 [Neisseria gonorrhoeae PID18]
 gi|240117827|ref|ZP_04731889.1| hypothetical protein NgonPID_05072 [Neisseria gonorrhoeae PID1]
 gi|240121793|ref|ZP_04734755.1| hypothetical protein NgonPI_08537 [Neisseria gonorrhoeae PID24-1]
 gi|240123383|ref|ZP_04736339.1| hypothetical protein NgonP_05480 [Neisseria gonorrhoeae PID332]
 gi|254493641|ref|ZP_05106812.1| iron-sulphur protein [Neisseria gonorrhoeae 1291]
 gi|260440656|ref|ZP_05794472.1| hypothetical protein NgonDG_06155 [Neisseria gonorrhoeae DGI2]
 gi|268594698|ref|ZP_06128865.1| iron-sulfur protein [Neisseria gonorrhoeae 35/02]
 gi|268596972|ref|ZP_06131139.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268598849|ref|ZP_06133016.1| iron-sulfur protein [Neisseria gonorrhoeae MS11]
 gi|268601207|ref|ZP_06135374.1| iron-sulfur protein [Neisseria gonorrhoeae PID18]
 gi|268603527|ref|ZP_06137694.1| iron-sulfur protein [Neisseria gonorrhoeae PID1]
 gi|268682008|ref|ZP_06148870.1| iron-sulfur protein [Neisseria gonorrhoeae PID332]
 gi|291043963|ref|ZP_06569679.1| iron-sulfur protein [Neisseria gonorrhoeae DGI2]
 gi|293399163|ref|ZP_06643328.1| iron-sulfur cluster-binding protein [Neisseria gonorrhoeae F62]
 gi|59718199|gb|AAW89604.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090]
 gi|226512681|gb|EEH62026.1| iron-sulphur protein [Neisseria gonorrhoeae 1291]
 gi|268548087|gb|EEZ43505.1| iron-sulfur protein [Neisseria gonorrhoeae 35/02]
 gi|268550760|gb|EEZ45779.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19]
 gi|268582980|gb|EEZ47656.1| iron-sulfur protein [Neisseria gonorrhoeae MS11]
 gi|268585338|gb|EEZ50014.1| iron-sulfur protein [Neisseria gonorrhoeae PID18]
 gi|268587658|gb|EEZ52334.1| iron-sulfur protein [Neisseria gonorrhoeae PID1]
 gi|268622292|gb|EEZ54692.1| iron-sulfur protein [Neisseria gonorrhoeae PID332]
 gi|291012426|gb|EFE04415.1| iron-sulfur protein [Neisseria gonorrhoeae DGI2]
 gi|291610577|gb|EFF39687.1| iron-sulfur cluster-binding protein [Neisseria gonorrhoeae F62]
 gi|317164144|gb|ADV07685.1| hypothetical protein NGTW08_0714 [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 484

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 18/65 (27%), Gaps = 10/65 (15%)

Query: 62  RCIACKLCEAICPA-----QAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQE 111
           +CI C  C   CP       A    + P                       C  CG C E
Sbjct: 317 QCIRCGACMNHCPVYTRIGGAAYGTTYPGPIGEIISPHLLGLDATRDLPTACTMCGACVE 376

Query: 112 ACPVD 116
            CPV 
Sbjct: 377 VCPVR 381


>gi|15677296|ref|NP_274450.1| hypothetical protein NMB1438 [Neisseria meningitidis MC58]
 gi|7226679|gb|AAF41799.1| conserved hypothetical protein [Neisseria meningitidis MC58]
 gi|261392301|emb|CAX49827.1| putative ferredoxin-like protein [Neisseria meningitidis 8013]
 gi|308389542|gb|ADO31862.1| conserved hypothetical iron-sulfur protein [Neisseria meningitidis
           alpha710]
 gi|316984564|gb|EFV63529.1| iron-sulfur cluster binding protein [Neisseria meningitidis H44/76]
 gi|325128504|gb|EGC51382.1| iron-sulfur cluster binding protein [Neisseria meningitidis N1568]
 gi|325134582|gb|EGC57226.1| iron-sulfur cluster binding protein [Neisseria meningitidis M13399]
 gi|325140618|gb|EGC63138.1| iron-sulfur cluster binding protein [Neisseria meningitidis CU385]
 gi|325142637|gb|EGC65028.1| iron-sulfur cluster binding protein [Neisseria meningitidis
           961-5945]
 gi|325144743|gb|EGC67038.1| iron-sulfur cluster binding protein [Neisseria meningitidis
           M01-240013]
 gi|325199947|gb|ADY95402.1| iron-sulfur cluster binding protein [Neisseria meningitidis H44/76]
 gi|325205809|gb|ADZ01262.1| iron-sulfur cluster binding protein [Neisseria meningitidis
           M04-240196]
          Length = 484

 Score = 42.8 bits (99), Expect = 0.015,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 18/65 (27%), Gaps = 10/65 (15%)

Query: 62  RCIACKLCEAICPA-----QAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQE 111
           +CI C  C   CP       A    + P                       C  CG C E
Sbjct: 317 QCIRCGACMNHCPVYTRIGGAAYGTTYPGPIGEIISPHLLGLDATRDLPTACTMCGACVE 376

Query: 112 ACPVD 116
            CPV 
Sbjct: 377 VCPVR 381


>gi|325523850|gb|EGD02079.1| formate dehydrogenase, alpha subunit [Burkholderia sp. TJI49]
          Length = 910

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 20/69 (28%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     +                   +C+ CG C  
Sbjct: 187 YFTYDPSKCIVCNRCVRACEETQGTFALTIAARGFESRVAAGESESFMASECVSCGACVA 246

Query: 112 ACPVDAIVE 120
           ACP   + E
Sbjct: 247 ACPTATLQE 255


>gi|322696015|gb|EFY87814.1| RNase L inhibitor of the ABC superfamily [Metarhizium acridum CQMa
           102]
          Length = 680

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 23/80 (28%), Positives = 29/80 (36%), Gaps = 4/80 (5%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            Y     +C   K C   C      + SG  C + T  +    I    CI CG+C + CP
Sbjct: 39  PYRLTAPQCRPRK-CRQECKKSCPVVRSGKLCIEVTPESRLAFISESLCIGCGICPKKCP 97

Query: 115 VDAIVEGP---NFEFATETR 131
            DAI       N E     R
Sbjct: 98  FDAITIINLPTNLENQVTHR 117


>gi|317968646|ref|ZP_07970036.1| ferredoxin [Synechococcus sp. CB0205]
          Length = 142

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 9/62 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +RC+ C +C ++CP+ A++  +            R + +  +C+ C  C  +CP +AI
Sbjct: 80  DPQRCVDCGICSSVCPSGALSFTA---------PHWRLEFNAQRCLVCEQCIPSCPFEAI 130

Query: 119 VE 120
             
Sbjct: 131 AL 132



 Score = 39.3 bits (90), Expect = 0.18,   Method: Composition-based stats.
 Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 8/101 (7%)

Query: 29  KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA-----CKLCE---AICPAQAITI 80
           K + T+++P E       +R               IA       + E    I    A   
Sbjct: 2   KRRITLHFPREAVHQPITYRLAVEFDIAAKILRAQIAPNQSGTMVVELSGDIDDLDAAEQ 61

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
               +     R +    ID  +C+ CG+C   CP  A+   
Sbjct: 62  WLEGQGLGLNRASGEIAIDPQRCVDCGICSSVCPSGALSFT 102


>gi|310828219|ref|YP_003960576.1| 4Fe-4S ferredoxin [Eubacterium limosum KIST612]
 gi|308739953|gb|ADO37613.1| 4Fe-4S ferredoxin [Eubacterium limosum KIST612]
          Length = 262

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 23/73 (31%), Gaps = 12/73 (16%)

Query: 49  GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
           G +     P   E C  C  C ++CP  AI  +                     CI C  
Sbjct: 172 GMNYTPLAPEVSEDCTQCGECVSVCPVAAINPDDPTETD------------PDLCIRCCA 219

Query: 109 CQEACPVDAIVEG 121
           C   CPV+A    
Sbjct: 220 CVRICPVEARKFT 232



 Score = 36.6 bits (83), Expect = 1.3,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 13/39 (33%)

Query: 87  HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
            DG   T         C  CG C   CPV AI      E
Sbjct: 170 KDGMNYTPLAPEVSEDCTQCGECVSVCPVAAINPDDPTE 208


>gi|307353333|ref|YP_003894384.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Methanoplanus petrolearius DSM 11571]
 gi|307156566|gb|ADN35946.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanoplanus
           petrolearius DSM 11571]
          Length = 266

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/90 (22%), Positives = 27/90 (30%), Gaps = 14/90 (15%)

Query: 35  NYPFEKGSTSPRFRGEHALR--RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
             P         +RG+  L    +    + C  C +C   CP  AI  E+          
Sbjct: 165 QIPGVNIPGCHPYRGDSKLWIVDFIAVSDECDQCGICAEGCPVGAIDPENCNLTDI---- 220

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
                    +CI C  C   CP  A    P
Sbjct: 221 --------ERCITCCACIRNCPKGARTMKP 242


>gi|291458748|ref|ZP_06598138.1| putative 4Fe-4S binding domain protein [Oribacterium sp. oral taxon
           078 str. F0262]
 gi|291418665|gb|EFE92384.1| putative 4Fe-4S binding domain protein [Oribacterium sp. oral taxon
           078 str. F0262]
          Length = 274

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 11/100 (11%)

Query: 19  AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78
           A  + L    K            +   +     +L R    +E+CI+C  C+ +CP    
Sbjct: 186 ALGIALAIMLKDNRAFCKYICPITVFLKPMSYFSLIRVSCDKEKCISCGKCKKLCPMDVD 245

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++  +  +G            +CI C  C   CP DA+
Sbjct: 246 VTDNSRKRKNG-----------TECILCMECVRNCPKDAL 274


>gi|268610596|ref|ZP_06144323.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Ruminococcus flavefaciens FD-1]
          Length = 605

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 22/67 (32%), Gaps = 11/67 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              +C +CK C                      R  +  I+   C  CGLC + CP  AI
Sbjct: 550 DSAKCTSCKKCIKTLGC-----------PGIVLRDGKVAIENSLCTGCGLCSQVCPFGAI 598

Query: 119 VEGPNFE 125
               N E
Sbjct: 599 GGTGNAE 605


>gi|227484620|ref|ZP_03914936.1| electron transport complex protein [Anaerococcus lactolyticus ATCC
           51172]
 gi|227237340|gb|EEI87355.1| electron transport complex protein [Anaerococcus lactolyticus ATCC
           51172]
          Length = 266

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 11/64 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +  CI C  CE  CP  AI I +G              ++  KC+ C  C + CP + I
Sbjct: 138 CDYGCIGCGTCEKTCPFDAIHIING-----------VAKVNRDKCVACKKCVDVCPKNII 186

Query: 119 VEGP 122
              P
Sbjct: 187 QLVP 190


>gi|225390043|ref|ZP_03759767.1| hypothetical protein CLOSTASPAR_03793 [Clostridium asparagiforme
           DSM 15981]
 gi|225043920|gb|EEG54166.1| hypothetical protein CLOSTASPAR_03793 [Clostridium asparagiforme
           DSM 15981]
          Length = 212

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 29/83 (34%), Gaps = 16/83 (19%)

Query: 40  KGSTSPRFR-----GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
           K      FR     G+   +   +  E C  C LC + CP   I     P          
Sbjct: 135 KPIIRRSFRLGAGDGQAEPQEGYHITEDCDGCGLCLSQCPQNCIDSSRTP---------- 184

Query: 95  RYDIDMIKCIYCGLCQEACPVDA 117
            + I    C++CG C E CP  A
Sbjct: 185 -FKIQAEHCLHCGNCVEICPQKA 206


>gi|194098461|ref|YP_002001521.1| Iron-sulphur protein [Neisseria gonorrhoeae NCCP11945]
 gi|240125630|ref|ZP_04738516.1| Iron-sulphur protein [Neisseria gonorrhoeae SK-92-679]
 gi|240128086|ref|ZP_04740747.1| Iron-sulphur protein [Neisseria gonorrhoeae SK-93-1035]
 gi|268684219|ref|ZP_06151081.1| iron-sulfur protein [Neisseria gonorrhoeae SK-92-679]
 gi|268686475|ref|ZP_06153337.1| iron-sulfur protein [Neisseria gonorrhoeae SK-93-1035]
 gi|193933751|gb|ACF29575.1| Iron-sulphur protein [Neisseria gonorrhoeae NCCP11945]
 gi|268624503|gb|EEZ56903.1| iron-sulfur protein [Neisseria gonorrhoeae SK-92-679]
 gi|268626759|gb|EEZ59159.1| iron-sulfur protein [Neisseria gonorrhoeae SK-93-1035]
          Length = 484

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 18/65 (27%), Gaps = 10/65 (15%)

Query: 62  RCIACKLCEAICPA-----QAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQE 111
           +CI C  C   CP       A    + P                       C  CG C E
Sbjct: 317 QCIRCGACMNHCPVYTRIGGAAYGTTYPGPIGEIISPHLLGLDATRDLPTACTMCGACVE 376

Query: 112 ACPVD 116
            CPV 
Sbjct: 377 VCPVR 381


>gi|218781711|ref|YP_002433029.1| nitroreductase [Desulfatibacillum alkenivorans AK-01]
 gi|218763095|gb|ACL05561.1| nitroreductase [Desulfatibacillum alkenivorans AK-01]
          Length = 347

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 7/66 (10%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++C  C  C      +A  I+        +R   RYD    +CI C  C  +CP +AI
Sbjct: 22  DRDKCNGCGRC-----VKACPIQLLELYGKKSRPNQRYDHF--RCITCQNCAASCPQNAI 74

Query: 119 VEGPNF 124
               ++
Sbjct: 75  TIKGDY 80



 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 14/34 (41%)

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           E          R   + +D  KC  CG C +ACP
Sbjct: 4   EKYRHMSLPQARYAEFVLDRDKCNGCGRCVKACP 37


>gi|153938544|ref|YP_001391087.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum F
           str. Langeland]
 gi|152934440|gb|ABS39938.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum F
           str. Langeland]
          Length = 579

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 11/65 (16%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +      +  C  C  C   CP +AI  ++               I+M +CI CG C   
Sbjct: 1   MDYINFKKANCKNCYKCLRSCPVKAIKFKNHQA-----------KIEMERCILCGRCVLV 49

Query: 113 CPVDA 117
           CP +A
Sbjct: 50  CPQNA 54


>gi|124039622|dbj|BAF45408.1| reductive dehalogenase [uncultured bacterium]
          Length = 500

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 60  EERCIACKLCEAICPAQAI---TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            + C  C +C  +CP+ AI     +      D T   + Y ++  +C+ C  C+  CP  
Sbjct: 389 HKFCETCGICTTVCPSNAIQVGPPQWSNNRWDNTPGYLGYRLNWGRCVLCTNCETYCPFF 448

Query: 117 AIVEG 121
            +  G
Sbjct: 449 NMTNG 453


>gi|123438804|ref|XP_001310180.1| 64kDa iron hydrogenase [Trichomonas vaginalis G3]
 gi|121891939|gb|EAX97250.1| 64kDa iron hydrogenase, putative [Trichomonas vaginalis G3]
          Length = 591

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 23/65 (35%), Gaps = 3/65 (4%)

Query: 59  GEERCIACKLCEAICPAQAIT---IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
              +C+ C  C   C   A T   I          + T    +    CI CG C   CPV
Sbjct: 155 DTSKCVLCGRCIRACEEVAGTSAIIFGNRAKKMRIQPTFGVTLQETSCIKCGQCTLYCPV 214

Query: 116 DAIVE 120
            AI E
Sbjct: 215 GAITE 219


>gi|77920495|ref|YP_358310.1| putative flavodoxin [Pelobacter carbinolicus DSM 2380]
 gi|77546578|gb|ABA90140.1| putative flavodoxin [Pelobacter carbinolicus DSM 2380]
          Length = 258

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 21/88 (23%), Positives = 28/88 (31%), Gaps = 12/88 (13%)

Query: 35  NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
           + P   G    + R +   +       +CI C  C A+CP+ AIT               
Sbjct: 159 DTPDMDGHVPYKDRPKFGGKAPQTDVGQCILCGKCAAVCPSGAIT------------VAD 206

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGP 122
               D   CI C  C  AC   A     
Sbjct: 207 SVTTDAENCIMCCACTRACDNKARSFTH 234


>gi|16332000|ref|NP_442728.1| hypothetical protein sll0031 [Synechocystis sp. PCC 6803]
 gi|1001312|dbj|BAA10799.1| sll0031 [Synechocystis sp. PCC 6803]
          Length = 395

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/98 (20%), Positives = 29/98 (29%), Gaps = 18/98 (18%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKL--CEAICPAQAITI 80
              Y  +              S     +   R+     ++C       C  +CPA AIT 
Sbjct: 95  TFDYSIQPPW--------LMVSLNDGEDPHFRKAQFDPQKCPPDCPRPCAQVCPAWAITS 146

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           ++      G        +   KC  CG C   CP   I
Sbjct: 147 DADEVVPTG--------VWAEKCYGCGRCLPICPQGII 176


>gi|88798170|ref|ZP_01113756.1| oxidoreductase, FAD-binding protein [Reinekea sp. MED297]
 gi|88778946|gb|EAR10135.1| oxidoreductase, FAD-binding protein [Reinekea sp. MED297]
          Length = 941

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 2/79 (2%)

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131
           +     I  +         +     D  + +CI CG C++ CP       P    A    
Sbjct: 508 LLNPGVILNDDEKAHLKHLKPMPVADPVIDRCIECGFCEDVCPSQNYSLTPRQRIAAF-- 565

Query: 132 QELYYDKERLLNNGDRWES 150
           +E+   K++ +N G  W+ 
Sbjct: 566 REIQRRKDQQVNVGPDWDQ 584


>gi|222824446|ref|YP_002576020.1| iron-sulfur cluster binding protein [Campylobacter lari RM2100]
 gi|222539667|gb|ACM64768.1| putative iron-sulfur cluster binding protein [Campylobacter lari
           RM2100]
          Length = 471

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/89 (19%), Positives = 19/89 (21%), Gaps = 10/89 (11%)

Query: 38  FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ----------AITIESGPRCH 87
                     R +           RCI C  C   CP                  G    
Sbjct: 284 EVHIILFDHNRSKMLNDEDYYEALRCIRCGACMNFCPVYDKIGGHTYQSVYPGPIGEVIS 343

Query: 88  DGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
                       +  C  CG C E CPV 
Sbjct: 344 PNLFGMQENGDILTFCSLCGRCSEVCPVR 372



 Score = 33.5 bits (75), Expect = 9.5,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 12/23 (52%)

Query: 102 KCIYCGLCQEACPVDAIVEGPNF 124
           +CI CG C   CPV   + G  +
Sbjct: 308 RCIRCGACMNFCPVYDKIGGHTY 330


>gi|332883757|gb|EGK04037.1| pyruvate:ferredoxin oxidoreductase [Dysgonomonas mossii DSM 22836]
          Length = 1187

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/83 (22%), Positives = 26/83 (31%), Gaps = 17/83 (20%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIES----------------GPRCHDGTR 91
           RG  A        E CI C  C  +CP   I                      +      
Sbjct: 675 RGVAAFVPVW-DAENCIQCNQCAYVCPHATIRPFVLDTEEQAKLPGDVTLLKAQGKQFDG 733

Query: 92  RTVRYDIDMIKCIYCGLCQEACP 114
              R  +D++ C+ CG C + CP
Sbjct: 734 MGFRIQVDVLDCLGCGNCADICP 756


>gi|333030659|ref|ZP_08458720.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Bacteroides coprosuis DSM 18011]
 gi|332741256|gb|EGJ71738.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Bacteroides coprosuis DSM 18011]
          Length = 261

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 12/78 (15%)

Query: 37  PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96
           P  +   +  ++       +P+ +E C  C  C  +CP  AI  ++              
Sbjct: 162 PQIQVKGNKPYKPYGRFPIFPSADETCNRCGKCARLCPVGAIPKDAPQLTD--------- 212

Query: 97  DIDMIKCIYCGLCQEACP 114
                KCI CG C   CP
Sbjct: 213 ---PNKCISCGRCLVICP 227


>gi|328952489|ref|YP_004369823.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfobacca acetoxidans DSM 11109]
 gi|328452813|gb|AEB08642.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfobacca acetoxidans DSM 11109]
          Length = 352

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 12/65 (18%)

Query: 57  PNGEERCIACKLCEA-ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
               + C AC +C    CP  AI    G            Y +   +CI CG+C   CP 
Sbjct: 274 HIDPDSCQACGVCRDERCPMDAIEEGEG-----------VYQVIDNRCIGCGVCVITCPG 322

Query: 116 DAIVE 120
           +AI  
Sbjct: 323 EAIAL 327


>gi|325849937|ref|ZP_08170976.1| electron transport complex, RnfABCDGE type, B subunit [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325479961|gb|EGC83044.1| electron transport complex, RnfABCDGE type, B subunit [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 265

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 11/64 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C+ C  C   C   AI + +G              +D  KC+ CG C + CP + I
Sbjct: 138 CNYGCVGCGSCVKACEFDAIHMVNG-----------VSVVDKEKCVACGACVKICPKNII 186

Query: 119 VEGP 122
              P
Sbjct: 187 ELVP 190


>gi|302390108|ref|YP_003825929.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermosediminibacter oceani DSM 16646]
 gi|302200736|gb|ADL08306.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Thermosediminibacter oceani DSM 16646]
          Length = 584

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 12/63 (19%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           Y   EE+C  C++C  +       I+          R     I+ I C+ C +C + CP 
Sbjct: 528 YTISEEKCRRCRMCLRL---GCPAIQ---------VRGDVIFINPINCVGCAVCVQVCPF 575

Query: 116 DAI 118
            AI
Sbjct: 576 GAI 578


>gi|291279681|ref|YP_003496516.1| indolepyruvate ferredoxin oxidoreductase subunit alpha
           [Deferribacter desulfuricans SSM1]
 gi|290754383|dbj|BAI80760.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Deferribacter desulfuricans SSM1]
          Length = 586

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 9/63 (14%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           ++C  CK+C       AI  +                ID + C+ CG+C   CP DAI  
Sbjct: 528 DKCKNCKICYEKFECPAIFEDKLANAA---------KIDELLCVNCGVCMSVCPFDAIAY 578

Query: 121 GPN 123
              
Sbjct: 579 VDE 581


>gi|241113248|ref|YP_002973083.1| ferredoxin III, nif-specific [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240861456|gb|ACS59122.1| ferredoxin III, nif-specific [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 97

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 10/65 (15%)

Query: 63  CIACKLCEAICPAQAIT----------IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           CI C  C  +C    +           +++G    D   R +       +CI CG C   
Sbjct: 25  CIGCGRCFKVCSRDVMHLGGITDSGDIVDAGDGADDEVERLLMIVDHPGRCIGCGACARV 84

Query: 113 CPVDA 117
           CP + 
Sbjct: 85  CPKNC 89


>gi|237734758|ref|ZP_04565239.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|229382086|gb|EEO32177.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 577

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 3/68 (4%)

Query: 59  GEERCIACKLCEAIC-PAQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115
              +C+ C  C   C   Q + I         T+    YD  M    C+ CG C   CPV
Sbjct: 139 NTSKCVLCGRCVETCAKTQGLGILGFMNRGFKTKVGPVYDKSMNDVNCMQCGQCINVCPV 198

Query: 116 DAIVEGPN 123
            A+ E   
Sbjct: 199 GALQEKEE 206


>gi|227873120|ref|ZP_03991412.1| possible [formate-C-acetyltransferase]-activating enzyme
           [Oribacterium sinus F0268]
 gi|227841014|gb|EEJ51352.1| possible [formate-C-acetyltransferase]-activating enzyme
           [Oribacterium sinus F0268]
          Length = 355

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/59 (32%), Positives = 20/59 (33%), Gaps = 11/59 (18%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
             P     CI C  C   CP +AI  E G           R      KCI C  C  AC
Sbjct: 110 HNPETRALCIHCGDCIPGCPTKAIYWEEG-----------RVAFSPEKCIGCDQCIHAC 157



 Score = 35.5 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 9/18 (50%), Positives = 10/18 (55%)

Query: 103 CIYCGLCQEACPVDAIVE 120
           CI+CG C   CP  AI  
Sbjct: 118 CIHCGDCIPGCPTKAIYW 135


>gi|261400861|ref|ZP_05986986.1| iron-sulfur cluster-binding protein [Neisseria lactamica ATCC
           23970]
 gi|313668550|ref|YP_004048834.1| iron-sulphur protein [Neisseria lactamica ST-640]
 gi|269209334|gb|EEZ75789.1| iron-sulfur cluster-binding protein [Neisseria lactamica ATCC
           23970]
 gi|313006012|emb|CBN87471.1| conserved hypothetical iron-sulphur protein [Neisseria lactamica
           020-06]
          Length = 484

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 18/65 (27%), Gaps = 10/65 (15%)

Query: 62  RCIACKLCEAICPA-----QAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQE 111
           +CI C  C   CP       A    + P                       C  CG C E
Sbjct: 317 QCIRCGACMNHCPVYTRIGGAAYGTTYPGPIGEIISPHLLGLDATRDLPTACTMCGACVE 376

Query: 112 ACPVD 116
            CPV 
Sbjct: 377 VCPVR 381


>gi|170754864|ref|YP_001781378.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum B1
           str. Okra]
 gi|169120076|gb|ACA43912.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum B1
           str. Okra]
          Length = 574

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 11/77 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +         C  C  C   CP +AI  ++              +I   +CI CG C   
Sbjct: 1   MNYIDISGLNCKNCYKCLRACPVKAIKFKNEKA-----------EIVEERCISCGRCLVI 49

Query: 113 CPVDAIVEGPNFEFATE 129
           CP +A  + P+ ++  +
Sbjct: 50  CPQNAKKDKPDIKYVKD 66


>gi|169827564|ref|YP_001697722.1| dihydropyrimidine dehydrogenase [Lysinibacillus sphaericus C3-41]
 gi|168992052|gb|ACA39592.1| dihydropyrimidine dehydrogenase [Lysinibacillus sphaericus C3-41]
          Length = 420

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 19/63 (30%), Gaps = 5/63 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117
             + CI C  C   C              +G             C+ C LC   CPVD A
Sbjct: 338 NNDVCINCNKCHIACE-DTSHQCIDLYTENGRPLLKV---REEDCVGCNLCSIVCPVDGA 393

Query: 118 IVE 120
           I  
Sbjct: 394 ISM 396


>gi|167769723|ref|ZP_02441776.1| hypothetical protein ANACOL_01057 [Anaerotruncus colihominis DSM
           17241]
 gi|167668084|gb|EDS12214.1| hypothetical protein ANACOL_01057 [Anaerotruncus colihominis DSM
           17241]
          Length = 177

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 5/60 (8%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
           + C+ C     A+A    +  R   G +      ID   CI CGLC  ACP  A+   P+
Sbjct: 54  VMCQHCSDASCAKACPRGAIKRGAAGEQL-----IDDALCIGCGLCVRACPFGAVYLRPD 108


>gi|153941336|ref|YP_001391085.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum F
           str. Langeland]
 gi|152937232|gb|ABS42730.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum F
           str. Langeland]
 gi|295319132|gb|ADF99509.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum F
           str. 230613]
          Length = 574

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 11/77 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +         C  C  C   CP +AI  ++              +I   +CI CG C   
Sbjct: 1   MNYIDISGLNCKNCYKCLRACPVKAIKFKNEKA-----------EIVEERCISCGRCLVI 49

Query: 113 CPVDAIVEGPNFEFATE 129
           CP +A  + P+ ++  +
Sbjct: 50  CPQNAKKDKPDIKYVKD 66


>gi|152990327|ref|YP_001356049.1| ferredoxin-like protein [Nitratiruptor sp. SB155-2]
 gi|151422188|dbj|BAF69692.1| ferredoxin-like protein [Nitratiruptor sp. SB155-2]
          Length = 354

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 11/63 (17%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
             +   C  CEAICPA AI  +                I   KCI CG C   CP +A+ 
Sbjct: 13  YSKFSTCDRCEAICPADAIETKEAGVA-----------IYQDKCIECGGCVGVCPTEALS 61

Query: 120 EGP 122
              
Sbjct: 62  LSD 64



 Score = 35.5 bits (80), Expect = 2.5,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 39/120 (32%), Gaps = 19/120 (15%)

Query: 6   CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65
             +    +       F  L+   K       P E      R+    +       +E C  
Sbjct: 201 KAIKEKSIPNKRKLLFTLLKKMGK-------PHEYKMLENRY---LSFTSDKTIDESCDN 250

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           C +C  ICP +A++           R+      D + C+ C LC + C   +I     F+
Sbjct: 251 CSICYRICPTEALSTT---------RKMDAILFDPLLCVRCHLCHDVCEKKSIQLAETFD 301


>gi|150007052|ref|YP_001301795.1| putative ferredoxin-type protein [Parabacteroides distasonis ATCC
           8503]
 gi|298377473|ref|ZP_06987425.1| ferredoxin-type protein [Bacteroides sp. 3_1_19]
 gi|149935476|gb|ABR42173.1| putative ferredoxin-type protein [Parabacteroides distasonis ATCC
           8503]
 gi|298265492|gb|EFI07153.1| ferredoxin-type protein [Bacteroides sp. 3_1_19]
          Length = 494

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)

Query: 64  IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           + C  CE  CP +AI + +  +  +  +      ID   CI CG C+  CP
Sbjct: 428 VNCGNCERHCPTKAIQMVA--KDPNDPKSLKVPVIDTELCIGCGACEYYCP 476



 Score = 39.3 bits (90), Expect = 0.16,   Method: Composition-based stats.
 Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 3/91 (3%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
            N    C AC+LC ++C  Q +   +  +       +        +C     C E CP  
Sbjct: 340 RNFTGHCTACQLCVSVCSNQVLRPSTDLKKFMQPEMSYERGYCRPECTK---CSEVCPTG 396

Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDR 147
           AI      + +        + KE  + N D 
Sbjct: 397 AIQLITKADKSATQIGHAVWIKENCVVNTDE 427



 Score = 35.8 bits (81), Expect = 2.2,   Method: Composition-based stats.
 Identities = 29/132 (21%), Positives = 41/132 (31%), Gaps = 19/132 (14%)

Query: 3   IFRCNVSFL--FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60
           ++  +V+     L  FV  F L  R       TI        T   F    +  R     
Sbjct: 166 MWIKSVATFGVALVTFVVLFLLAWRNGRTYCNTIC----PVGTVLGFVARFSFLRPVIDV 221

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E+C  C LC   C A  I                 + ID  +C+ C  C + C   A+  
Sbjct: 222 EKCNGCGLCARNCKAACIDS-------------KNHSIDYSRCVTCLDCIDKCKRGALTY 268

Query: 121 GPNFEFATETRQ 132
            P        R+
Sbjct: 269 VPRKRKTESERE 280



 Score = 34.7 bits (78), Expect = 4.2,   Method: Composition-based stats.
 Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 8/61 (13%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI------YCGLCQEACPVDAIV 119
           C  C  +CP  AI + +             +      C+       CG C+  CP  AI 
Sbjct: 386 CTKCSEVCPTGAIQLITKADKSATQIGHAVW--IKENCVVNTDEVNCGNCERHCPTKAIQ 443

Query: 120 E 120
            
Sbjct: 444 M 444


>gi|153840324|ref|ZP_01992991.1| electron transport complex protein RnfC [Vibrio parahaemolyticus
           AQ3810]
 gi|149746011|gb|EDM57141.1| electron transport complex protein RnfC [Vibrio parahaemolyticus
           AQ3810]
          Length = 452

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 1/53 (1%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            CI C  C   CPA  +  +               ++++  CI CG C   CP
Sbjct: 36  ECIRCGQCAEACPAS-LLPQQLQWHAKAEEYDKLEELNLKDCIECGACAFVCP 87



 Score = 33.5 bits (75), Expect = 9.5,   Method: Composition-based stats.
 Identities = 12/43 (27%), Positives = 19/43 (44%)

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           +  +Q    ++       TR  +      ++CI CG C EACP
Sbjct: 6   LPHSQVPITKTANCILAPTRHEISAHQYEMECIRCGQCAEACP 48


>gi|148379790|ref|YP_001254331.1| hydrogenase [Clostridium botulinum A str. ATCC 3502]
 gi|153933959|ref|YP_001384087.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum A
           str. ATCC 19397]
 gi|153936361|ref|YP_001387627.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum A
           str. Hall]
 gi|148289274|emb|CAL83370.1| putative hydrogenase [Clostridium botulinum A str. ATCC 3502]
 gi|152930003|gb|ABS35503.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum A
           str. ATCC 19397]
 gi|152932275|gb|ABS37774.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum A
           str. Hall]
 gi|322806068|emb|CBZ03635.1| periplasmic [Fe] hydrogenase [Clostridium botulinum H04402 065]
          Length = 574

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 11/77 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +         C  C  C   CP +AI  ++              +I   +CI CG C   
Sbjct: 1   MNYIDISGLNCKNCYKCLRACPVKAIKFKNEKA-----------EIVEERCISCGRCLVI 49

Query: 113 CPVDAIVEGPNFEFATE 129
           CP +A  + P+ ++  +
Sbjct: 50  CPQNAKKDKPDIKYVKD 66


>gi|126651249|ref|ZP_01723459.1| dihydropyrimidine dehydrogenase [Bacillus sp. B14905]
 gi|126592087|gb|EAZ86153.1| dihydropyrimidine dehydrogenase [Bacillus sp. B14905]
          Length = 427

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/63 (25%), Positives = 19/63 (30%), Gaps = 5/63 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117
             + CI C  C   C              +G             C+ C LC   CPVD A
Sbjct: 345 NNDVCINCNKCHIACE-DTSHQCIDLYTENGRPLLKV---REEDCVGCNLCSIVCPVDGA 400

Query: 118 IVE 120
           I  
Sbjct: 401 ISM 403


>gi|119489770|ref|ZP_01622528.1| ferredoxin [Lyngbya sp. PCC 8106]
 gi|119454344|gb|EAW35494.1| ferredoxin [Lyngbya sp. PCC 8106]
          Length = 134

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 9/78 (11%)

Query: 41  GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100
              S   +     R     EE C+ C LC  +CP +A+T++S       TR         
Sbjct: 62  WMQSKNIKVSLERREILIDEEICVDCGLCTGVCPTEALTLDSDTFYLTFTR--------- 112

Query: 101 IKCIYCGLCQEACPVDAI 118
            +CI C  C  ACPV AI
Sbjct: 113 SRCIVCEQCISACPVQAI 130



 Score = 37.8 bits (86), Expect = 0.53,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 18/38 (47%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
           ID   C+ CGLC   CP +A+    +  + T TR    
Sbjct: 79  IDEEICVDCGLCTGVCPTEALTLDSDTFYLTFTRSRCI 116


>gi|121701937|ref|XP_001269233.1| RNase L inhibitor of the ABC superfamily, putative [Aspergillus
           clavatus NRRL 1]
 gi|119397376|gb|EAW07807.1| RNase L inhibitor of the ABC superfamily, putative [Aspergillus
           clavatus NRRL 1]
          Length = 633

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 3/68 (4%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP---N 123
           K C   C      + +G  C + T  +    I    CI CG+C + CP  AI       N
Sbjct: 15  KKCRQECKKSCPVVRTGKLCIEVTPESKIAFISERLCIGCGICPKKCPFGAIHIINLPTN 74

Query: 124 FEFATETR 131
            E     R
Sbjct: 75  LETQVTHR 82


>gi|189425610|ref|YP_001952787.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter lovleyi
           SZ]
 gi|189421869|gb|ACD96267.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter lovleyi
           SZ]
          Length = 252

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 27/104 (25%), Positives = 38/104 (36%), Gaps = 19/104 (18%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKL-CEAICPAQAITIESGPRCHDGTR 91
           T+ YP        RFRG  AL+R       C      C A CP  A++            
Sbjct: 16  TMAYPDGPVVLPERFRGYPALQRD----LLCDLDGTACVAACPFGALSCSENGLV----- 66

Query: 92  RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
                 +DM KC++C  C  +     +  G +   A   R+EL 
Sbjct: 67  ------LDMGKCLFCADCPAS---SCVGFGNDHRLAVSRREELL 101


>gi|11127701|gb|AAG31037.1|AF262401_1 putative 64kDa iron hydrogenase [Trichomonas vaginalis]
          Length = 589

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/65 (29%), Positives = 23/65 (35%), Gaps = 3/65 (4%)

Query: 59  GEERCIACKLCEAICPAQAIT---IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
              +C+ C  C   C   A T   I          + T    +    CI CG C   CPV
Sbjct: 153 DTSKCVLCGRCIRACEEVAGTSAIIFGNRAKKMRIQPTFGVTLQETSCIKCGQCTLYCPV 212

Query: 116 DAIVE 120
            AI E
Sbjct: 213 GAITE 217


>gi|71906801|ref|YP_284388.1| electron transport complex protein RnfB [Dechloromonas aromatica
           RCB]
 gi|71846422|gb|AAZ45918.1| Electron transport complex, RnfABCDGE type, B subunit
           [Dechloromonas aromatica RCB]
          Length = 180

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 24/67 (35%), Gaps = 10/67 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E  CI C LC   CP  AI   +             + I   +C  C LC   CPV+ I
Sbjct: 106 DENTCIGCTLCIQACPVDAIVGAAKQ----------LHIIIAQQCTGCELCLPPCPVECI 155

Query: 119 VEGPNFE 125
                 E
Sbjct: 156 AMATIPE 162



 Score = 36.2 bits (82), Expect = 1.7,   Method: Composition-based stats.
 Identities = 14/28 (50%), Positives = 16/28 (57%)

Query: 91  RRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           +      ID   CI C LC +ACPVDAI
Sbjct: 98  KPKQVAVIDENTCIGCTLCIQACPVDAI 125


>gi|116749577|ref|YP_846264.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Syntrophobacter fumaroxidans MPOB]
 gi|116698641|gb|ABK17829.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein
           [Syntrophobacter fumaroxidans MPOB]
          Length = 261

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 9/69 (13%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIES---------GPRCHDGTRRTVRYDIDMIKCIY 105
            +     RCI C  C  +CP    T  S              D +   VR      +CI 
Sbjct: 148 WWLTHMNRCIHCHGCRDVCPVCFCTECSLEHRELVSGAKLPPDSSFHLVRAVHMGGRCID 207

Query: 106 CGLCQEACP 114
           CGLC+E CP
Sbjct: 208 CGLCEEICP 216


>gi|303244434|ref|ZP_07330769.1| nitrite and sulphite reductase 4Fe-4S region [Methanothermococcus
           okinawensis IH1]
 gi|302485132|gb|EFL48061.1| nitrite and sulphite reductase 4Fe-4S region [Methanothermococcus
           okinawensis IH1]
          Length = 626

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/79 (22%), Positives = 26/79 (32%), Gaps = 11/79 (13%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +         G   ++     EE C  C  C  +C  +AI +           +   
Sbjct: 469 CPNKCVRPQIHDIGIVGVKYPIVNEENCNGCGRCADVCKVEAIHM-----------KGKT 517

Query: 96  YDIDMIKCIYCGLCQEACP 114
              +   CI CG C  ACP
Sbjct: 518 SYTNYNACIGCGKCIAACP 536



 Score = 37.0 bits (84), Expect = 0.88,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 1/57 (1%)

Query: 75  AQAITIESGPRCHDGTRRTVRYDI-DMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130
           +        P+ HD     V+Y I +   C  CG C + C V+AI       +    
Sbjct: 467 SGCPNKCVRPQIHDIGIVGVKYPIVNEENCNGCGRCADVCKVEAIHMKGKTSYTNYN 523


>gi|326315758|ref|YP_004233430.1| dihydroorotate dehydrogenase family protein [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323372594|gb|ADX44863.1| dihydroorotate dehydrogenase family protein [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 449

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 10/61 (16%)

Query: 59  GEERCIACKLCEAICP---AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
            ++ CI C  C  +C     QAIT                +++D  +C+ C LC   CPV
Sbjct: 342 NQDACIQCGRCHVVCEDTSHQAITFTQEGGA-------RSFEVDESECVGCNLCVSICPV 394

Query: 116 D 116
            
Sbjct: 395 P 395


>gi|223984602|ref|ZP_03634729.1| hypothetical protein HOLDEFILI_02025 [Holdemania filiformis DSM
           12042]
 gi|223963449|gb|EEF67834.1| hypothetical protein HOLDEFILI_02025 [Holdemania filiformis DSM
           12042]
          Length = 560

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 23/93 (24%), Positives = 33/93 (35%), Gaps = 5/93 (5%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRR 92
               +E   T P F  +           +C+ C  C   C   Q + I S       T+ 
Sbjct: 121 RKVRYEGEKTPPTF--DEVAPGIVRDTSKCVLCGRCIETCKKVQGLGILSFINRGFNTKV 178

Query: 93  TVRYDIDMIK--CIYCGLCQEACPVDAIVEGPN 123
              +D       C+ CG C  ACPV A+ E  +
Sbjct: 179 APVFDKSFNDVNCMQCGQCVNACPVGALFEKED 211


>gi|223985163|ref|ZP_03635255.1| hypothetical protein HOLDEFILI_02561 [Holdemania filiformis DSM
           12042]
 gi|223962872|gb|EEF67292.1| hypothetical protein HOLDEFILI_02561 [Holdemania filiformis DSM
           12042]
          Length = 278

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 11/65 (16%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
             P     C  C  C A CPA A+T+ +G    +             +C+ C  C   CP
Sbjct: 36  HNPETWRICDHCGQCVAGCPAGALTLHAGKVVWE-----------ESRCVGCDQCIHVCP 84

Query: 115 VDAIV 119
             A  
Sbjct: 85  HHASC 89


>gi|167389621|ref|XP_001739023.1| hypothetical protein [Entamoeba dispar SAW760]
 gi|165897462|gb|EDR24612.1| hypothetical protein, conserved [Entamoeba dispar SAW760]
          Length = 409

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 29/82 (35%), Gaps = 4/82 (4%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L R     +RC     C   C        +G  C +   +  R  I    CI C LC + 
Sbjct: 11  LDRIAVINDRCKP-GKCRLECKKTCPINRAGGLCIEVLPKDKRAVISETLCIGCALCVKK 69

Query: 113 CPVDAIVEGP---NFEFATETR 131
           CP +AI       N E  T  R
Sbjct: 70  CPFEAIKIINLPKNLEQCTTHR 91


>gi|222053326|ref|YP_002535688.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           FRC-32]
 gi|221562615|gb|ACM18587.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           FRC-32]
          Length = 1019

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 7/62 (11%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
             C++C  C   C   AI+    P+         +  ++ I C   GLC   CP  AI  
Sbjct: 943 SDCVSCGACITACKYGAISFHDTPQG-------KKARVEPILCKGDGLCNAKCPTGAIYL 995

Query: 121 GP 122
             
Sbjct: 996 KH 997



 Score = 35.1 bits (79), Expect = 2.9,   Method: Composition-based stats.
 Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 12/92 (13%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPA-------QAITIESGPRCHDGTRRTVRYDI 98
            F+     +     EE+C  C +C   CP        Q ++       +      +   +
Sbjct: 94  DFKVTLTKKPRYISEEKCTGCNICVDYCPVKISDPFNQHLSENKAVHIYFSQAVPLVTYV 153

Query: 99  DMIKCIY-----CGLCQEACPVDAIVEGPNFE 125
           D   C+Y     C +C  AC  +AI      E
Sbjct: 154 DPETCLYLKEGKCQICVGACKTNAIDLHQKPE 185


>gi|83594655|ref|YP_428407.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodospirillum rubrum ATCC
           11170]
 gi|83577569|gb|ABC24120.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodospirillum rubrum ATCC
           11170]
          Length = 506

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 16/66 (24%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           RG+++     +    C+ C LC  +CP      E                   + CI CG
Sbjct: 277 RGKYSRDADFSQRGDCVDCGLCVQVCPTGVDIREG----------------TQLGCIGCG 320

Query: 108 LCQEAC 113
           LC +AC
Sbjct: 321 LCVDAC 326



 Score = 35.5 bits (80), Expect = 2.6,   Method: Composition-based stats.
 Identities = 7/15 (46%), Positives = 9/15 (60%)

Query: 101 IKCIYCGLCQEACPV 115
             C+ CGLC + CP 
Sbjct: 290 GDCVDCGLCVQVCPT 304


>gi|325204424|gb|ADY99877.1| iron-sulfur cluster binding protein [Neisseria meningitidis
           M01-240355]
          Length = 484

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 18/65 (27%), Gaps = 10/65 (15%)

Query: 62  RCIACKLCEAICPA-----QAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQE 111
           +CI C  C   CP       A    + P                       C  CG C E
Sbjct: 317 QCIRCGACMNHCPVYTRIGGAAYGTTYPGPIGEIISPHLLGLDATRDLPTACTMCGACVE 376

Query: 112 ACPVD 116
            CPV 
Sbjct: 377 VCPVR 381


>gi|325299224|ref|YP_004259141.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Bacteroides salanitronis DSM 18170]
 gi|324318777|gb|ADY36668.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Bacteroides salanitronis DSM 18170]
          Length = 260

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 10/66 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             E C  C  C  +CP  AI + +                D+ +CI C  C +ACP  A 
Sbjct: 187 CTENCFGCGECVEVCPTHAIRLNAENVIET----------DINRCIRCCACVKACPNGAR 236

Query: 119 VEGPNF 124
           V    F
Sbjct: 237 VYDNPF 242



 Score = 40.5 bits (93), Expect = 0.090,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 10/23 (43%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVE 120
           +    C  CG C E CP  AI  
Sbjct: 186 VCTENCFGCGECVEVCPTHAIRL 208


>gi|325283907|ref|YP_004256448.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Deinococcus proteolyticus MRP]
 gi|324315716|gb|ADY26831.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Deinococcus proteolyticus MRP]
          Length = 335

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 16/98 (16%)

Query: 37  PFEKGSTSPRFR----------GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC 86
           P E+     R+R          G       P  +E+C+ C +C  +CP +AIT       
Sbjct: 227 PAERTPQEWRWRKASLNPAPPAGTPVYWPAPLVDEKCMDCPVCSNVCPTEAITRTHDAAG 286

Query: 87  HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
                 T+   +D+  C  C  C ++CP  A+    ++
Sbjct: 287 ------TLHLTLDLSACTGCMACVDSCPPQAMHRQNHW 318



 Score = 42.0 bits (97), Expect = 0.030,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 13/63 (20%)

Query: 66  CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
           C LC   CP +A+ +                 ID  +C  CGLC +ACP  A+     ++
Sbjct: 33  CDLCARACPHEAVILGPLGASV---------QIDPDRCTGCGLCVQACPSGAL----EYD 79

Query: 126 FAT 128
              
Sbjct: 80  LTG 82


>gi|317471719|ref|ZP_07931060.1| glycyl-radical enzyme activating protein family [Anaerostipes sp.
           3_2_56FAA]
 gi|316900823|gb|EFV22796.1| glycyl-radical enzyme activating protein family [Anaerostipes sp.
           3_2_56FAA]
          Length = 304

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 11/61 (18%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
             +++CI C  C  +CP++AI++                 +   KCI C  C   CP  A
Sbjct: 56  WDQKKCIGCHHCIDVCPSKAISLIQD-----------HIRVHAEKCIGCRQCVLECPGKA 104

Query: 118 I 118
           +
Sbjct: 105 L 105



 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 102 KCIYCGLCQEACPVDAIVEGPNF 124
           KCI C  C + CP  AI    + 
Sbjct: 60  KCIGCHHCIDVCPSKAISLIQDH 82


>gi|313672000|ref|YP_004050111.1| 4fe-4S ferredoxin [Calditerrivibrio nitroreducens DSM 19672]
 gi|312938756|gb|ADR17948.1| 4Fe-4S ferredoxin [Calditerrivibrio nitroreducens DSM 19672]
          Length = 355

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 21/65 (32%), Gaps = 13/65 (20%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +++C AC  C + C   AI I+                     C  C  C   CP  AI
Sbjct: 191 HQDKCTACGRCLSACAHDAIVIKPKA-------------FINENCTGCARCIAVCPEGAI 237

Query: 119 VEGPN 123
               +
Sbjct: 238 GINWD 242


>gi|302872730|ref|YP_003841366.1| Glutamate synthase (NADPH) [Caldicellulosiruptor obsidiansis OB47]
 gi|302575589|gb|ADL43380.1| Glutamate synthase (NADPH) [Caldicellulosiruptor obsidiansis OB47]
          Length = 502

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 22/64 (34%), Gaps = 9/64 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E RCI CK+C   C  +    +             R   D  KC+ C  C   CP  A+
Sbjct: 14  DETRCIRCKVCVRQCANEVHEYDDEED---------RVVADSSKCVACHRCVVMCPTKAL 64

Query: 119 VEGP 122
               
Sbjct: 65  TIKK 68


>gi|288962886|ref|YP_003453180.1| 4Fe-4S ferredoxin, iron-sulfur binding [Azospirillum sp. B510]
 gi|288915152|dbj|BAI76636.1| 4Fe-4S ferredoxin, iron-sulfur binding [Azospirillum sp. B510]
          Length = 505

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 27/134 (20%), Positives = 36/134 (26%), Gaps = 21/134 (15%)

Query: 1   MRIFRCNV---SFLFLKEFVGAFFLCLRYFFKAKT------TINYPFEKGSTSPRFRGEH 51
           MR F       +       V  F   L YF  A        T    +E  S    F G  
Sbjct: 167 MRKFLRKAGKHAGWLALSLVTGFGF-LAYFSDAPALLRDLLTFQASYEAVSFFAIFAGMT 225

Query: 52  ALRRYPNGEERCI-ACKL----------CEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100
            +      E+ C+  C               +   QA   ++            R     
Sbjct: 226 YVMAGWTREQMCMYMCPWPRIQSAMLDEHSLVVTYQADRGDNRGPKRKSQSWDERRAQGF 285

Query: 101 IKCIYCGLCQEACP 114
             CI CG C + CP
Sbjct: 286 GDCIDCGQCVQVCP 299



 Score = 41.6 bits (96), Expect = 0.036,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 20/63 (31%), Gaps = 16/63 (25%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
           G   CI C  C  +CP                            CI CGLC +AC    I
Sbjct: 284 GFGDCIDCGQCVQVCPIGIDVRTGE----------------QADCINCGLCVDACDGIMI 327

Query: 119 VEG 121
            +G
Sbjct: 328 QQG 330


>gi|256810130|ref|YP_003127499.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus fervens AG86]
 gi|256793330|gb|ACV23999.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Methanocaldococcus fervens AG86]
          Length = 82

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 7/68 (10%)

Query: 60  EERCIACKLCEAICPAQAITIE-SGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112
            ERC  C  C   CP  A   E  G +        +R +      ++   C  CG C EA
Sbjct: 10  PERCHGCGNCVVSCPVNAKNPETWGGKGPYSDEVVIRVENGVVTVVNQDLCGGCGACIEA 69

Query: 113 CPVDAIVE 120
           CPV+AI  
Sbjct: 70  CPVNAIEL 77


>gi|226949071|ref|YP_002804162.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum A2
           str. Kyoto]
 gi|226841860|gb|ACO84526.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum A2
           str. Kyoto]
          Length = 574

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 11/77 (14%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +         C  C  C   CP +AI  ++              +I   +CI CG C   
Sbjct: 1   MNYIDISGLNCKNCYKCLRACPVKAIKFKNEKA-----------EIVEERCISCGRCLVI 49

Query: 113 CPVDAIVEGPNFEFATE 129
           CP +A  + P+ ++  +
Sbjct: 50  CPQNAKKDKPDIKYVKD 66


>gi|170693701|ref|ZP_02884859.1| formate dehydrogenase, alpha subunit [Burkholderia graminis C4D1M]
 gi|170141483|gb|EDT09653.1| formate dehydrogenase, alpha subunit [Burkholderia graminis C4D1M]
          Length = 992

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     +G         +        +C+ CG C  
Sbjct: 198 YFTYDPAKCIVCNRCVRACEETQGTFALTIAGRGFESRVAASENRPFMDSECVSCGACVA 257

Query: 112 ACPVDAIVE 120
           ACP   + E
Sbjct: 258 ACPTATLQE 266


>gi|167746910|ref|ZP_02419037.1| hypothetical protein ANACAC_01622 [Anaerostipes caccae DSM 14662]
 gi|167653870|gb|EDR97999.1| hypothetical protein ANACAC_01622 [Anaerostipes caccae DSM 14662]
          Length = 304

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 11/61 (18%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
             +++CI C  C  +CP++AI++                 +   KCI C  C   CP  A
Sbjct: 56  WDQKKCIGCHHCIDVCPSKAISLIQD-----------HIRVHAEKCIGCRQCVLECPGKA 104

Query: 118 I 118
           +
Sbjct: 105 L 105



 Score = 36.6 bits (83), Expect = 1.2,   Method: Composition-based stats.
 Identities = 9/23 (39%), Positives = 11/23 (47%)

Query: 102 KCIYCGLCQEACPVDAIVEGPNF 124
           KCI C  C + CP  AI    + 
Sbjct: 60  KCIGCHHCIDVCPSKAISLIQDH 82


>gi|161870306|ref|YP_001599476.1| iron-sulphur protein [Neisseria meningitidis 053442]
 gi|161595859|gb|ABX73519.1| iron-sulphur protein [Neisseria meningitidis 053442]
          Length = 484

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 18/65 (27%), Gaps = 10/65 (15%)

Query: 62  RCIACKLCEAICPA-----QAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQE 111
           +CI C  C   CP       A    + P                       C  CG C E
Sbjct: 317 QCIRCGACMNHCPVYTRIGGAAYGTTYPGPIGEIISPHLLGLDATRDLPTACTMCGACVE 376

Query: 112 ACPVD 116
            CPV 
Sbjct: 377 VCPVR 381


>gi|158520200|ref|YP_001528070.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfococcus oleovorans Hxd3]
 gi|158509026|gb|ABW65993.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus
           oleovorans Hxd3]
          Length = 386

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 12/91 (13%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E C  C  C   CP  A+      +            ++  +C+ CG+C  AC  +AI  
Sbjct: 305 EECNLCMACVDKCPVNALYHHKPHKDDGSDNFIA---LNESECLGCGVCVMACDNEAIQL 361

Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESE 151
               +   E           +L+ GDR   E
Sbjct: 362 VKVRDTVPEI---------DVLHMGDRHNKE 383


>gi|150402467|ref|YP_001329761.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta [Methanococcus
           maripaludis C7]
 gi|150033497|gb|ABR65610.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein
           [Methanococcus maripaludis C7]
          Length = 387

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/104 (21%), Positives = 32/104 (30%), Gaps = 4/104 (3%)

Query: 35  NYPFEKGS-TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93
            +  EK        R  +   +     + C  C  C+                     + 
Sbjct: 267 KWLEEKYPSIEEWNRQWNKCIKCYGCRDVCPVC-FCKECALTADYIDTGSIPPDPIMFQG 325

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE-TRQELYY 136
           VR       C+ CG C++ CP   I     F    E TR+EL Y
Sbjct: 326 VRMSHMAFSCVNCGQCEDVCP-MEIPVARIFHKIQEKTRKELGY 368


>gi|157737100|ref|YP_001489783.1| 2-oxoglutarate-acceptor oxidoreductase subunit OorD [Arcobacter
           butzleri RM4018]
 gi|114461614|gb|ABI75080.1| OorD subunit of 2-oxoglutarate:acceptor oxidoreductase [Arcobacter
           butzleri]
 gi|157698954|gb|ABV67114.1| OorD subunit of 2-oxoglutarate:acceptor oxidoreductase [Arcobacter
           butzleri RM4018]
          Length = 107

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 6/90 (6%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E RC AC  C ++CPA  + +        G+  TV        CI C  C+ ACP  
Sbjct: 13  WVDENRCKACDKCVSVCPAGVLAMRQEVHSTLGSMITVV---HPESCIGCSDCELACPDF 69

Query: 117 AIV--EGPNFEFATETRQELYYDKERLLNN 144
           AI   +   F+FA  + ++    +E+++ N
Sbjct: 70  AIFVADRKEFKFAKLS-EDAKIRREKIIEN 98


>gi|91203919|emb|CAJ71572.1| similar to proton-translocating NADH dehydrogenase I, 51 kDa
           subunit (NuoF) [Candidatus Kuenenia stuttgartiensis]
          Length = 616

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 15/96 (15%)

Query: 23  CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82
            LRY FK +   +   +   T+       AL RY    ++C  C++C   CP +AI+   
Sbjct: 535 TLRY-FKDEYIAHIRDKICPTATCT----ALHRYEVIPDKCTKCQVCIRNCPVKAISGSK 589

Query: 83  GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
                          ID  KCI C +C E C   AI
Sbjct: 590 TEVAF----------IDKAKCIKCNVCYEKCNFLAI 615


>gi|85859306|ref|YP_461508.1| ferridoxin [Syntrophus aciditrophicus SB]
 gi|85722397|gb|ABC77340.1| ferridoxin [Syntrophus aciditrophicus SB]
          Length = 346

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 23/75 (30%), Gaps = 4/75 (5%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI----DMIKCIYCGL 108
           +    +G       K         AI   S        ++ +  D+       KC  CG 
Sbjct: 145 IFDQTDGFVIFSHFKGHMEAGFGGAIKNLSMGFASRAQKQRMHADVRPLLMPEKCTKCGT 204

Query: 109 CQEACPVDAIVEGPN 123
           C E CP  A   G +
Sbjct: 205 CVEVCPTGAAQFGDD 219



 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/71 (21%), Positives = 19/71 (26%), Gaps = 10/71 (14%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
            E+C  C  C  +CP  A                         CI C  C   CP  A+ 
Sbjct: 196 PEKCTKCGTCVEVCPTGAAQFGDDGLPFYDHEV----------CIGCAQCIGFCPALALK 245

Query: 120 EGPNFEFATET 130
                + A   
Sbjct: 246 IHWETDAAVFQ 256


>gi|71907393|ref|YP_284980.1| 4Fe-4S ferredoxin, iron-sulfur binding:FAD linked oxidase,
           C-terminal:FAD linked oxidase, N-terminal [Dechloromonas
           aromatica RCB]
 gi|71847014|gb|AAZ46510.1| 4Fe-4S ferredoxin, iron-sulfur binding:FAD linked oxidase,
           C-terminal:FAD linked oxidase, N-terminal [Dechloromonas
           aromatica RCB]
          Length = 923

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 14/73 (19%)

Query: 57  PNGEERCIACKLCEAICPAQ--------------AITIESGPRCHDGTRRTVRYDIDMIK 102
            +  +RCI C  CE +CP+                ++  +      G+       + +  
Sbjct: 531 EDIVDRCIECGFCEPLCPSHRLTLSPRQRITSVRELSRRAAAGEPAGSVGEDYAYMGLDT 590

Query: 103 CIYCGLCQEACPV 115
           C  CGLC  ACPV
Sbjct: 591 CAGCGLCSTACPV 603



 Score = 34.3 bits (77), Expect = 6.4,   Method: Composition-based stats.
 Identities = 8/22 (36%), Positives = 11/22 (50%)

Query: 101 IKCIYCGLCQEACPVDAIVEGP 122
            +CI CG C+  CP   +   P
Sbjct: 535 DRCIECGFCEPLCPSHRLTLSP 556


>gi|16125654|ref|NP_420218.1| ferredoxin [Caulobacter crescentus CB15]
 gi|221234408|ref|YP_002516844.1| polyferredoxin protein fixG [Caulobacter crescentus NA1000]
 gi|13422764|gb|AAK23386.1| ferredoxin, putative [Caulobacter crescentus CB15]
 gi|220963580|gb|ACL94936.1| polyferredoxin protein fixG [Caulobacter crescentus NA1000]
          Length = 496

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 16/66 (24%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           RG H   +   G   CI C+ C  +CP                      D   ++CI CG
Sbjct: 268 RGAHKKGQSWEGRGDCIDCRQCVVVCPMG----------------IDIRDGSQLECINCG 311

Query: 108 LCQEAC 113
           LC +AC
Sbjct: 312 LCVDAC 317


>gi|73749289|ref|YP_308528.1| putative reductive dehalogenase [Dehalococcoides sp. CBDB1]
 gi|289433250|ref|YP_003463123.1| reductive dehalogenase [Dehalococcoides sp. GT]
 gi|73661005|emb|CAI83612.1| putative reductive dehalogenase [Dehalococcoides sp. CBDB1]
 gi|77176884|gb|ABA64547.1| reductive dehalogenase protein [Dehalococcoides sp. KB1]
 gi|288946970|gb|ADC74667.1| reductive dehalogenase [Dehalococcoides sp. GT]
          Length = 495

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 3/74 (4%)

Query: 56  YPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
                + C  C +C   CP  AI             G    + +  D  KC +C +CQ  
Sbjct: 375 DFGARKFCETCGICAEACPFGAINPGEPTWKDDNAFGNAGFLGWRCDYTKCPHCPICQGT 434

Query: 113 CPVDAIVEGPNFEF 126
           CP ++       + 
Sbjct: 435 CPFNSHPGSFIHDI 448


>gi|148264001|ref|YP_001230707.1| hydrogenase 2 protein HybA [Geobacter uraniireducens Rf4]
 gi|146397501|gb|ABQ26134.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Geobacter
           uraniireducens Rf4]
          Length = 311

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 12/94 (12%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM-IKCIYCGLCQEACPV 115
              +  CI C+ C+  C       +         +  +  + ++  K I    C E CPV
Sbjct: 140 DYNKNTCIGCRYCQVACAFNIPKFQWEKSIPQIVKCDLCKNTNLREKGIS--ACAEVCPV 197

Query: 116 DAIVEGPNFEFATETRQELYYD-KERLLNNGDRW 148
            AI  G         R++L  + K RL  N D++
Sbjct: 198 GAIKFG--------KRKDLLQEAKTRLRENPDKY 223


>gi|115350949|ref|YP_772788.1| formate dehydrogenase subunit alpha [Burkholderia ambifaria AMMD]
 gi|115280937|gb|ABI86454.1| formate dehydrogenase alpha subunit [Burkholderia ambifaria AMMD]
          Length = 983

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 14/69 (20%), Positives = 20/69 (28%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T     +                   +C+ CG C  
Sbjct: 187 YFTYDPSKCIVCNRCVRACEETQGTFALTIAARGFESRVAAGESESFMDSECVSCGACVA 246

Query: 112 ACPVDAIVE 120
           ACP   + E
Sbjct: 247 ACPTATLQE 255


>gi|315651987|ref|ZP_07904989.1| ferredoxin [Eubacterium saburreum DSM 3986]
 gi|315485816|gb|EFU76196.1| ferredoxin [Eubacterium saburreum DSM 3986]
          Length = 55

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 11/64 (17%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 ++C++C  CE  CP  AI+               +Y+ID   CI CG C   CP
Sbjct: 1   MAYTITDKCVSCGTCEGECPVSAISQGD-----------TQYNIDADACIDCGTCASVCP 49

Query: 115 VDAI 118
            +AI
Sbjct: 50  TEAI 53


>gi|307718326|ref|YP_003873858.1| hypothetical protein STHERM_c06260 [Spirochaeta thermophila DSM
           6192]
 gi|306532051|gb|ADN01585.1| hypothetical protein STHERM_c06260 [Spirochaeta thermophila DSM
           6192]
          Length = 596

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 21/86 (24%), Positives = 29/86 (33%), Gaps = 9/86 (10%)

Query: 59  GEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
              +CI C  C  +C       AI   +            +  +    C+ CG C   CP
Sbjct: 146 DMNKCIGCGRCIEVCHHVQSVGAIFFHNRGSHTIVANAAGQ-TMGTSVCVACGQCVVYCP 204

Query: 115 VDAIVEGPNFEFATETRQELYYDKER 140
           V A+ E      A E   E   D E+
Sbjct: 205 VGALYEKE----AVERVWEALADPEK 226



 Score = 38.5 bits (88), Expect = 0.32,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 52  ALRRYPNGEERCIACKLCE-----AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106
            L  +P+   +CI    CE          ++I  +   R     R +     DM KCI C
Sbjct: 94  ILATHPDDCLKCIKHGKCELQDLAERLEVRSIPYDKYERGLPVDRTSPSIVRDMNKCIGC 153

Query: 107 GLCQEAC 113
           G C E C
Sbjct: 154 GRCIEVC 160


>gi|302391321|ref|YP_003827141.1| electron transport complex, RnfABCDGE type, C subunit
           [Acetohalobium arabaticum DSM 5501]
 gi|302203398|gb|ADL12076.1| electron transport complex, RnfABCDGE type, C subunit
           [Acetohalobium arabaticum DSM 5501]
          Length = 442

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 7/82 (8%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
                 CI C  C  +CPA  +   +  +           D +++ CI CG C   CP +
Sbjct: 361 EYESSNCIRCARCVDVCPAF-LMPVTLSKVAQVDMVEKLDDYNVMDCIECGSCSYVCPAN 419

Query: 117 A-----IVEGPNFEFATETRQE 133
                 I  G + + A E R+ 
Sbjct: 420 IPLLHWIRLGKD-KLAAEQRKN 440


>gi|298675341|ref|YP_003727091.1| methyl-viologen-reducing hydrogenase delta subunit [Methanohalobium
           evestigatum Z-7303]
 gi|298288329|gb|ADI74295.1| methyl-viologen-reducing hydrogenase delta subunit [Methanohalobium
           evestigatum Z-7303]
          Length = 789

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 11/65 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ++C  C +C+ +C                     + ++D + C  CG C  ACP DAI
Sbjct: 576 DTDKCTGCGICQDVCKFG-----------KIKLYNHKAEVDELSCHGCGSCSAACPEDAI 624

Query: 119 VEGPN 123
                
Sbjct: 625 YMRNQ 629



 Score = 39.3 bits (90), Expect = 0.17,   Method: Composition-based stats.
 Identities = 19/76 (25%), Positives = 27/76 (35%), Gaps = 12/76 (15%)

Query: 66  CKLCEAICPAQAITIESGP-----------RCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
           CK C   C +      S P                        I+   C+ CGLC++ CP
Sbjct: 244 CKGCIEECSSVCPVEISNPFDYGIGKIKAISMPFPQAVPQCAYINDEYCVGCGLCRQVCP 303

Query: 115 VDAI-VEGPNFEFATE 129
            DA+  E    EF+ +
Sbjct: 304 ADAVDYEQKEEEFSFD 319


>gi|282900214|ref|ZP_06308168.1| 4Fe-4S ferredoxin, iron-sulfur binding [Cylindrospermopsis
           raciborskii CS-505]
 gi|281194889|gb|EFA69832.1| 4Fe-4S ferredoxin, iron-sulfur binding [Cylindrospermopsis
           raciborskii CS-505]
          Length = 373

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 26/74 (35%), Gaps = 8/74 (10%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
           P FR      R           K CE ICPAQAI   S        ++     I   KC 
Sbjct: 96  PHFRKAKFNPRDCPDNCS----KPCEKICPAQAIVFNSQIN----NQKDSSSGIIAEKCY 147

Query: 105 YCGLCQEACPVDAI 118
            CG C   CP   I
Sbjct: 148 GCGRCVPICPYGII 161


>gi|255527514|ref|ZP_05394382.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7]
 gi|255508784|gb|EET85156.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7]
          Length = 601

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 10/68 (14%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
             L  +   E++C  C +C+  C   AIT +              + ID  KC+ CG C 
Sbjct: 541 KKLTTFVIDEDKCKGCDICKKNCAVDAITGDVKKP----------HVIDDEKCVRCGNCM 590

Query: 111 EACPVDAI 118
             C  DA+
Sbjct: 591 NMCKFDAV 598


>gi|304316579|ref|YP_003851724.1| hydrogenase, Fe-only [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
 gi|302778081|gb|ADL68640.1| hydrogenase, Fe-only [Thermoanaerobacterium thermosaccharolyticum
           DSM 571]
          Length = 581

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI----DMIKCIYCGLCQEACP 114
              +C+ C+ C A C      + +    + G +  V        +   CI CG C EACP
Sbjct: 144 DPNKCVLCRRCVATCN-NVQNVFAIGMVNRGFKTIVAPSFGRSLNDSPCISCGQCIEACP 202

Query: 115 VDAIVEGP 122
           V AI E  
Sbjct: 203 VGAIYEKD 210


>gi|261402754|ref|YP_003246978.1| ABC transporter releated protein [Methanocaldococcus vulcanius M7]
 gi|261369747|gb|ACX72496.1| ABC transporter releated protein [Methanocaldococcus vulcanius M7]
          Length = 588

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 1/66 (1%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +R      +RC   K C   C      +  G +  +    T +  I  + C  CG+C + 
Sbjct: 1   MRLAIIDYDRCQP-KKCSMECMKYCPGVRMGEKTIEIDENTGKPVISEVLCSGCGICVKR 59

Query: 113 CPVDAI 118
           CP  AI
Sbjct: 60  CPFKAI 65


>gi|237508970|ref|ZP_04521685.1| iron-sulfur cluster-binding protein [Burkholderia pseudomallei
           MSHR346]
 gi|235001175|gb|EEP50599.1| iron-sulfur cluster-binding protein [Burkholderia pseudomallei
           MSHR346]
          Length = 477

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 26/105 (24%), Gaps = 10/105 (9%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-QAIT 79
           +       +    ++ P E             L        RCI C  C   CP   A+ 
Sbjct: 271 YTTFSTGPRRGDDLDGPQEYHVVLVDNGRTRMLAGEFRDMLRCIRCGACMNHCPVYGAVG 330

Query: 80  IESGPRCHDGTR---------RTVRYDIDMIKCIYCGLCQEACPV 115
             +    + G                      C   G C E CPV
Sbjct: 331 GHAYGWVYPGPMGAVLTPLLQGIEHDTDLPNACTLNGRCAEVCPV 375



 Score = 35.1 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNF 124
           M++CI CG C   CPV   V G  +
Sbjct: 310 MLRCIRCGACMNHCPVYGAVGGHAY 334


>gi|258513534|ref|YP_003189756.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfotomaculum acetoxidans DSM 771]
 gi|257777239|gb|ACV61133.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfotomaculum acetoxidans DSM 771]
          Length = 443

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 11/59 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
            E++C  C  C   CP +AI +  G              I   +CI CG C + CP  A
Sbjct: 11  DEDKCKGCTNCVKRCPTEAIRVREGRAL-----------IIEERCIDCGECIKICPNRA 58



 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 13/30 (43%)

Query: 89  GTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             +      +D  KC  C  C + CP +AI
Sbjct: 1   MQKYFHSVRLDEDKCKGCTNCVKRCPTEAI 30


>gi|291288415|ref|YP_003505231.1| nitroreductase [Denitrovibrio acetiphilus DSM 12809]
 gi|290885575|gb|ADD69275.1| nitroreductase [Denitrovibrio acetiphilus DSM 12809]
          Length = 274

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 8/66 (12%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +  +   E +C  C LC   CP + I I +G               +  KC+ C  C   
Sbjct: 1   MLNFIIDESKCTKCGLCAVDCPTKIIDITNGI--------PFIQQKNEGKCMGCQHCLAV 52

Query: 113 CPVDAI 118
           CPV A+
Sbjct: 53  CPVAAL 58



 Score = 38.5 bits (88), Expect = 0.31,   Method: Composition-based stats.
 Identities = 11/30 (36%), Positives = 13/30 (43%)

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
            + + ID  KC  CGLC   CP   I    
Sbjct: 1   MLNFIIDESKCTKCGLCAVDCPTKIIDITN 30


>gi|268590651|ref|ZP_06124872.1| hydrogenase-2 operon protein HybA [Providencia rettgeri DSM 1131]
 gi|291314044|gb|EFE54497.1| hydrogenase-2 operon protein HybA [Providencia rettgeri DSM 1131]
          Length = 328

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 12/96 (12%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL--CQEACP 114
                 C  C+ C   CP          +     +  +     + +    GL  C E CP
Sbjct: 137 HYDASVCTGCRYCMVACPFNIPKYAYDDKFGAIHKCELCNQKGVERLDKGGLPGCVEVCP 196

Query: 115 VDAIVEGPNFEFATETRQELYYD-KERL-LNNGDRW 148
             A++ G        TR+EL  + K+RL L  GD +
Sbjct: 197 TGAVIFG--------TREELLAEAKKRLTLKVGDEY 224



 Score = 35.5 bits (80), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 11/71 (15%)

Query: 48  RGEHALRRYPNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
             +     Y   +++C+ C    C ++CP QA+  +          +T     D   C  
Sbjct: 95  HKDQEKDGYAYIKKQCMHCVDPNCVSVCPVQALKKDP---------KTGIVHYDASVCTG 145

Query: 106 CGLCQEACPVD 116
           C  C  ACP +
Sbjct: 146 CRYCMVACPFN 156


>gi|167818545|ref|ZP_02450225.1| iron-sulfur binding protein [Burkholderia pseudomallei 91]
          Length = 438

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 26/105 (24%), Gaps = 10/105 (9%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-QAIT 79
           +       +    ++ P E             L        RCI C  C   CP   A+ 
Sbjct: 276 YTTFSTGPRRGDDLDGPQEYHVVLVDNGRTRMLAGEFRDMLRCIRCGACMNHCPVYGAVG 335

Query: 80  IESGPRCHDGTR---------RTVRYDIDMIKCIYCGLCQEACPV 115
             +    + G                      C   G C E CPV
Sbjct: 336 GHAYGWVYPGPMGAVLTPLLQGIEHDTDLPNACTLNGRCAEVCPV 380



 Score = 35.1 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNF 124
           M++CI CG C   CPV   V G  +
Sbjct: 315 MLRCIRCGACMNHCPVYGAVGGHAY 339


>gi|167755791|ref|ZP_02427918.1| hypothetical protein CLORAM_01306 [Clostridium ramosum DSM 1402]
 gi|167704730|gb|EDS19309.1| hypothetical protein CLORAM_01306 [Clostridium ramosum DSM 1402]
          Length = 582

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 3/68 (4%)

Query: 59  GEERCIACKLCEAIC-PAQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115
              +C+ C  C   C   Q + I         T+    YD  M    C+ CG C   CPV
Sbjct: 144 NTSKCVLCGRCVETCAKTQGLGILGFMNRGFKTKVGPVYDKSMNDVNCMQCGQCINVCPV 203

Query: 116 DAIVEGPN 123
            A+ E   
Sbjct: 204 GALQEKEE 211


>gi|152981248|ref|YP_001355342.1| NAD-dependent formate dehydrogenase alpha subunit
           [Janthinobacterium sp. Marseille]
 gi|151281325|gb|ABR89735.1| NAD-dependent formate dehydrogenase alpha subunit
           [Janthinobacterium sp. Marseille]
          Length = 957

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 3/69 (4%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +     +CI C  C   C     T      G           + D    +C+ CG C +
Sbjct: 159 YFTYDASKCIVCNRCVRACEETQGTFALTIDGRGFTSRVSAGQKEDFIDSECVSCGACVD 218

Query: 112 ACPVDAIVE 120
           ACP   + E
Sbjct: 219 ACPTATLTE 227


>gi|154251980|ref|YP_001412804.1| cytochrome c oxidase cbb3 type accessory protein FixG [Parvibaculum
           lavamentivorans DS-1]
 gi|154155930|gb|ABS63147.1| Cytochrome c oxidase cbb3 type accessory protein FixG [Parvibaculum
           lavamentivorans DS-1]
          Length = 513

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 22/66 (33%), Gaps = 16/66 (24%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           RG H       G   CI C  C A CP                      D   ++CI C 
Sbjct: 283 RGPHKKGTSWEGRGDCIDCGQCVAACPMG----------------IDIRDGMQLECIQCA 326

Query: 108 LCQEAC 113
           LC +AC
Sbjct: 327 LCIDAC 332



 Score = 40.1 bits (92), Expect = 0.11,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 29/89 (32%), Gaps = 14/89 (15%)

Query: 38  FEKGSTSPRFRGEHALRRYPNG----EERCIACKLCEAICPAQAITIES--------GPR 85
           F+  + +  F G  AL  Y  G    E+ CI   +C       A+  E            
Sbjct: 223 FDAPAIAYLFIGLFALTTYTLGGLAREQVCIY--MCPWPRIQGAMFDEESLLVSYKEDRG 280

Query: 86  CHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
              G  +          CI CG C  ACP
Sbjct: 281 EKRGPHKKGTSWEGRGDCIDCGQCVAACP 309


>gi|53721357|ref|YP_110342.1| iron-sulfur binding protein [Burkholderia pseudomallei K96243]
 gi|52211771|emb|CAH37770.1| putative iron-sulfur binding protein [Burkholderia pseudomallei
           K96243]
          Length = 482

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 26/105 (24%), Gaps = 10/105 (9%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-QAIT 79
           +       +    ++ P E             L        RCI C  C   CP   A+ 
Sbjct: 276 YTTFSTGPRRGDDLDGPQEYHVVLVDNGRTRMLAGEFRDMLRCIRCGACMNHCPVYGAVG 335

Query: 80  IESGPRCHDGTR---------RTVRYDIDMIKCIYCGLCQEACPV 115
             +    + G                      C   G C E CPV
Sbjct: 336 GHAYGWVYPGPMGAVLTPLLQGIEHDTDLPNACTLNGRCAEVCPV 380



 Score = 35.1 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNF 124
           M++CI CG C   CPV   V G  +
Sbjct: 315 MLRCIRCGACMNHCPVYGAVGGHAY 339


>gi|167896996|ref|ZP_02484398.1| iron-sulfur cluster binding protein [Burkholderia pseudomallei
           7894]
 gi|167905375|ref|ZP_02492580.1| iron-sulfur cluster binding protein [Burkholderia pseudomallei NCTC
           13177]
 gi|167921614|ref|ZP_02508705.1| iron-sulfur cluster binding protein [Burkholderia pseudomallei
           BCC215]
 gi|217423155|ref|ZP_03454657.1| iron-sulfur cluster-binding protein [Burkholderia pseudomallei 576]
 gi|254299416|ref|ZP_04966865.1| iron-sulfur cluster-binding protein [Burkholderia pseudomallei
           406e]
 gi|157809511|gb|EDO86681.1| iron-sulfur cluster-binding protein [Burkholderia pseudomallei
           406e]
 gi|217394063|gb|EEC34083.1| iron-sulfur cluster-binding protein [Burkholderia pseudomallei 576]
          Length = 477

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 26/105 (24%), Gaps = 10/105 (9%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-QAIT 79
           +       +    ++ P E             L        RCI C  C   CP   A+ 
Sbjct: 271 YTTFSTGPRRGDDLDGPQEYHVVLVDNGRTRMLAGEFRDMLRCIRCGACMNHCPVYGAVG 330

Query: 80  IESGPRCHDGTR---------RTVRYDIDMIKCIYCGLCQEACPV 115
             +    + G                      C   G C E CPV
Sbjct: 331 GHAYGWVYPGPMGAVLTPLLQGIEHDTDLPNACTLNGRCAEVCPV 375



 Score = 35.1 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNF 124
           M++CI CG C   CPV   V G  +
Sbjct: 310 MLRCIRCGACMNHCPVYGAVGGHAY 334


>gi|53716996|ref|YP_106036.1| iron-sulfur cluster binding protein [Burkholderia mallei ATCC
           23344]
 gi|52422966|gb|AAU46536.1| iron-sulfur cluster binding protein [Burkholderia mallei ATCC
           23344]
          Length = 482

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 26/105 (24%), Gaps = 10/105 (9%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-QAIT 79
           +       +    ++ P E             L        RCI C  C   CP   A+ 
Sbjct: 276 YTTFSTGPRRGDDLDGPQEYHVVLVDNGRTRMLAGEFRDMLRCIRCGACMNHCPVYGAVG 335

Query: 80  IESGPRCHDGTR---------RTVRYDIDMIKCIYCGLCQEACPV 115
             +    + G                      C   G C E CPV
Sbjct: 336 GHAYGWVYPGPMGAVLTPLLQGIEHDTDLPNACTLNGRCAEVCPV 380



 Score = 35.1 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNF 124
           M++CI CG C   CPV   V G  +
Sbjct: 315 MLRCIRCGACMNHCPVYGAVGGHAY 339


>gi|218768441|ref|YP_002342953.1| conserved hypothetical iron-sulphur protein [Neisseria meningitidis
           Z2491]
 gi|121052449|emb|CAM08785.1| conserved hypothetical iron-sulphur protein [Neisseria meningitidis
           Z2491]
 gi|319410685|emb|CBY91064.1| putative ferredoxin-like protein [Neisseria meningitidis WUE 2594]
 gi|325130521|gb|EGC53276.1| iron-sulfur cluster binding protein [Neisseria meningitidis
           OX99.30304]
 gi|325201865|gb|ADY97319.1| iron-sulfur cluster binding protein [Neisseria meningitidis
           M01-240149]
 gi|325208383|gb|ADZ03835.1| iron-sulfur cluster binding protein [Neisseria meningitidis
           NZ-05/33]
          Length = 484

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 18/65 (27%), Gaps = 10/65 (15%)

Query: 62  RCIACKLCEAICPA-----QAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQE 111
           +CI C  C   CP       A    + P                       C  CG C E
Sbjct: 317 QCIRCGACMNHCPVYTRIGGAAYGTTYPGPIGEIISPHLLGLDATRDLPTACTMCGACVE 376

Query: 112 ACPVD 116
            CPV 
Sbjct: 377 VCPVR 381


>gi|126456646|ref|YP_001074502.1| iron-sulfur cluster-binding protein [Burkholderia pseudomallei
           1106a]
 gi|134284218|ref|ZP_01770910.1| iron-sulfur cluster-binding protein [Burkholderia pseudomallei 305]
 gi|167848444|ref|ZP_02473952.1| iron-sulfur cluster-binding protein [Burkholderia pseudomallei
           B7210]
 gi|167913674|ref|ZP_02500765.1| iron-sulfur cluster-binding protein [Burkholderia pseudomallei 112]
 gi|242313873|ref|ZP_04812890.1| iron-sulfur cluster-binding protein [Burkholderia pseudomallei
           1106b]
 gi|254189362|ref|ZP_04895872.1| iron-sulfur cluster-binding protein [Burkholderia pseudomallei
           Pasteur 52237]
 gi|126230414|gb|ABN93827.1| iron-sulfur cluster-binding protein [Burkholderia pseudomallei
           1106a]
 gi|134244421|gb|EBA44527.1| iron-sulfur cluster-binding protein [Burkholderia pseudomallei 305]
 gi|157937040|gb|EDO92710.1| iron-sulfur cluster-binding protein [Burkholderia pseudomallei
           Pasteur 52237]
 gi|242137112|gb|EES23515.1| iron-sulfur cluster-binding protein [Burkholderia pseudomallei
           1106b]
          Length = 477

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 26/105 (24%), Gaps = 10/105 (9%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-QAIT 79
           +       +    ++ P E             L        RCI C  C   CP   A+ 
Sbjct: 271 YTTFSTGPRRGDDLDGPQEYHVVLVDNGRTRMLAGEFRDMLRCIRCGACMNHCPVYGAVG 330

Query: 80  IESGPRCHDGTR---------RTVRYDIDMIKCIYCGLCQEACPV 115
             +    + G                      C   G C E CPV
Sbjct: 331 GHAYGWVYPGPMGAVLTPLLQGIEHDTDLPNACTLNGRCAEVCPV 375



 Score = 35.1 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNF 124
           M++CI CG C   CPV   V G  +
Sbjct: 310 MLRCIRCGACMNHCPVYGAVGGHAY 334


>gi|126442529|ref|YP_001061562.1| iron-sulfur cluster binding protein [Burkholderia pseudomallei 668]
 gi|126222020|gb|ABN85525.1| iron-sulfur cluster-binding protein [Burkholderia pseudomallei 668]
          Length = 477

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 26/105 (24%), Gaps = 10/105 (9%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-QAIT 79
           +       +    ++ P E             L        RCI C  C   CP   A+ 
Sbjct: 271 YTTFSTGPRRGDDLDGPQEYHVVLVDNGRTRMLAGEFRDMLRCIRCGACMNHCPVYGAVG 330

Query: 80  IESGPRCHDGTR---------RTVRYDIDMIKCIYCGLCQEACPV 115
             +    + G                      C   G C E CPV
Sbjct: 331 GHAYGWVYPGPMGAVLTPLLQGIEHDTDLPNACTLNGRCAEVCPV 375



 Score = 35.1 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNF 124
           M++CI CG C   CPV   V G  +
Sbjct: 310 MLRCIRCGACMNHCPVYGAVGGHAY 334


>gi|254182689|ref|ZP_04889282.1| iron-sulfur cluster-binding protein [Burkholderia pseudomallei
           1655]
 gi|184213223|gb|EDU10266.1| iron-sulfur cluster-binding protein [Burkholderia pseudomallei
           1655]
          Length = 477

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 26/105 (24%), Gaps = 10/105 (9%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-QAIT 79
           +       +    ++ P E             L        RCI C  C   CP   A+ 
Sbjct: 271 YTTFSTGPRRGDDLDGPQEYHVVLVDNGRTRMLAGEFRDMLRCIRCGACMNHCPVYGAVG 330

Query: 80  IESGPRCHDGTR---------RTVRYDIDMIKCIYCGLCQEACPV 115
             +    + G                      C   G C E CPV
Sbjct: 331 GHAYGWVYPGPMGAVLTPLLQGIEHDTDLPNACTLNGRCAEVCPV 375



 Score = 35.1 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNF 124
           M++CI CG C   CPV   V G  +
Sbjct: 310 MLRCIRCGACMNHCPVYGAVGGHAY 334


>gi|67643358|ref|ZP_00442105.1| iron-sulfur cluster-binding protein [Burkholderia mallei GB8 horse
           4]
 gi|251768069|ref|ZP_04820390.1| iron-sulfur cluster-binding protein [Burkholderia mallei PRL-20]
 gi|254176148|ref|ZP_04882806.1| iron-sulfur cluster-binding protein [Burkholderia mallei ATCC
           10399]
 gi|254200890|ref|ZP_04907255.1| iron-sulfur cluster-binding protein [Burkholderia mallei FMH]
 gi|254204855|ref|ZP_04911208.1| iron-sulfur cluster-binding protein [Burkholderia mallei JHU]
 gi|147748502|gb|EDK55577.1| iron-sulfur cluster-binding protein [Burkholderia mallei FMH]
 gi|147754441|gb|EDK61505.1| iron-sulfur cluster-binding protein [Burkholderia mallei JHU]
 gi|160697190|gb|EDP87160.1| iron-sulfur cluster-binding protein [Burkholderia mallei ATCC
           10399]
 gi|238524689|gb|EEP88121.1| iron-sulfur cluster-binding protein [Burkholderia mallei GB8 horse
           4]
 gi|243060887|gb|EES43073.1| iron-sulfur cluster-binding protein [Burkholderia mallei PRL-20]
          Length = 477

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 26/105 (24%), Gaps = 10/105 (9%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-QAIT 79
           +       +    ++ P E             L        RCI C  C   CP   A+ 
Sbjct: 271 YTTFSTGPRRGDDLDGPQEYHVVLVDNGRTRMLAGEFRDMLRCIRCGACMNHCPVYGAVG 330

Query: 80  IESGPRCHDGTR---------RTVRYDIDMIKCIYCGLCQEACPV 115
             +    + G                      C   G C E CPV
Sbjct: 331 GHAYGWVYPGPMGAVLTPLLQGIEHDTDLPNACTLNGRCAEVCPV 375



 Score = 35.1 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNF 124
           M++CI CG C   CPV   V G  +
Sbjct: 310 MLRCIRCGACMNHCPVYGAVGGHAY 334


>gi|325474291|gb|EGC77479.1| ferredoxin [Treponema denticola F0402]
          Length = 58

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 11/68 (16%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           ++        C  C  CE+ CP  AI+   G              ID   CI CG C   
Sbjct: 1   MQMAYKISNECTNCAACESECPVNAISEAGGKHV-----------IDADTCISCGACAGV 49

Query: 113 CPVDAIVE 120
           CPV+AI E
Sbjct: 50  CPVEAISE 57


>gi|313680914|ref|YP_004058653.1| ferredoxin [Oceanithermus profundus DSM 14977]
 gi|313153629|gb|ADR37480.1| ferredoxin [Oceanithermus profundus DSM 14977]
          Length = 217

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 4/68 (5%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR----TVRYDIDMIKCIYCGLCQ 110
            +     +C  C+ C   C      + +      G        +   +    C++CG C 
Sbjct: 136 FFVRDYAKCYTCRRCIDACGEGVQGVWAYSTTGRGHAAVPGTPLDLPLPATPCVFCGNCV 195

Query: 111 EACPVDAI 118
           + CP  A+
Sbjct: 196 QVCPTGAL 203


>gi|326314843|ref|YP_004232515.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein
           [Acidovorax avenae subsp. avenae ATCC 19860]
 gi|323371679|gb|ADX43948.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Acidovorax avenae subsp. avenae ATCC 19860]
          Length = 86

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 10/70 (14%)

Query: 59  GEERCIACKLCEAICPAQAIT--------IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
              RC  C  C A+C    ++         E  P    G +R+V +D     C  C LC 
Sbjct: 13  DPGRCTGCGRCVAVCAPHVLSLGTEGGPGREGAPLPPWGPKRSVLHD--PAGCTGCALCA 70

Query: 111 EACPVDAIVE 120
             CP DAI  
Sbjct: 71  VHCPFDAIRM 80


>gi|269216555|ref|ZP_06160409.1| indolepyruvate oxidoreductase subunit IorA [Slackia exigua ATCC
           700122]
 gi|269130084|gb|EEZ61166.1| indolepyruvate oxidoreductase subunit IorA [Slackia exigua ATCC
           700122]
          Length = 657

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 11/60 (18%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            ++ C  C+ C       AI                R  ID   C+ CG C + CP  A+
Sbjct: 591 DQDACTKCRRCITAIGCPAIGFMDD-----------RIMIDETICMGCGQCVQVCPYGAM 639


>gi|237810768|ref|YP_002895219.1| ferredoxin [Burkholderia pseudomallei MSHR346]
 gi|251767337|ref|ZP_02266850.2| ferredoxin [Burkholderia mallei PRL-20]
 gi|237505466|gb|ACQ97784.1| ferredoxin [Burkholderia pseudomallei MSHR346]
 gi|243063120|gb|EES45306.1| ferredoxin [Burkholderia mallei PRL-20]
          Length = 125

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 30/106 (28%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC------GLCQEACP 114
           + CI C +CE  CP  AI++               Y ID  KC  C        CQ+ CP
Sbjct: 44  DECINCDVCEPECPNGAISMGPE-----------IYVIDPNKCTECVGHFDEPQCQQVCP 92

Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDS 160
           V+ I + P        R E    K++L+    ++ + I      D+
Sbjct: 93  VECIPQDPG-------RPE---TKDQLMA---KYRALIAAEQKDDA 125



 Score = 34.7 bits (78), Expect = 4.3,   Method: Composition-based stats.
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 98  IDMIKCIYCGLCQEACPVDAIVEGPN 123
           +   +CI C +C+  CP  AI  GP 
Sbjct: 41  MITDECINCDVCEPECPNGAISMGPE 66


>gi|187779575|ref|ZP_02996048.1| hypothetical protein CLOSPO_03171 [Clostridium sporogenes ATCC
           15579]
 gi|187773200|gb|EDU37002.1| hypothetical protein CLOSPO_03171 [Clostridium sporogenes ATCC
           15579]
          Length = 574

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 11/71 (15%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           +         C  C  C   CP +AI  ++              +I   +CI CG C   
Sbjct: 1   MNYIDISGLNCKNCYKCLRACPVKAIKFKNEKA-----------EIVEERCISCGRCLVI 49

Query: 113 CPVDAIVEGPN 123
           CP +A  + P+
Sbjct: 50  CPQNAKKDKPD 60


>gi|158334026|ref|YP_001515198.1| iron-sulfur cluster binding protein [Acaryochloris marina
           MBIC11017]
 gi|158304267|gb|ABW25884.1| iron-sulfur cluster binding protein, putative [Acaryochloris marina
           MBIC11017]
          Length = 149

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 9/60 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E+ C+ C LC  ICP QA+T++          ++   +    +CI C  C   CPV AI
Sbjct: 95  DEDSCVHCGLCTGICPTQALTLDP---------KSFLLNFTRSRCIVCEQCVPTCPVQAI 145



 Score = 38.9 bits (89), Expect = 0.26,   Method: Composition-based stats.
 Identities = 22/116 (18%), Positives = 32/116 (27%), Gaps = 8/116 (6%)

Query: 28  FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH 87
            K + T+ +P         +R         N     +A      +    A  I+      
Sbjct: 16  VKKRVTLTFPRRAVPVPVTYRLAKDFNVAANIIRAQVAPNQIGKLVVELAGDIDQLDAAI 75

Query: 88  DGTRRTVRYD--------IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135
           D                 ID   C++CGLC   CP  A+   P       TR    
Sbjct: 76  DWMISQNIDVSSSNREILIDEDSCVHCGLCTGICPTQALTLDPKSFLLNFTRSRCI 131


>gi|148553514|ref|YP_001261096.1| cyclic nucleotide-binding protein [Sphingomonas wittichii RW1]
 gi|148498704|gb|ABQ66958.1| cyclic nucleotide-binding protein [Sphingomonas wittichii RW1]
          Length = 801

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/93 (18%), Positives = 20/93 (21%), Gaps = 28/93 (30%)

Query: 59  GEERCIACKLCEAICPA----------QAITIESGPRCHDGTRRTVRYDIDMIK------ 102
            E  C+ C  CE  C            +A    +        R                 
Sbjct: 625 DENLCVGCDNCEKACADSHEGISRLDREAGRTFAHLHVPTSCRHCEHPHCMADCPPTAIH 684

Query: 103 ------------CIYCGLCQEACPVDAIVEGPN 123
                       CI CG CQ  CP   I     
Sbjct: 685 RGQDGEVYIDDTCIGCGNCQRNCPYGVIRMEKE 717



 Score = 38.5 bits (88), Expect = 0.30,   Method: Composition-based stats.
 Identities = 21/129 (16%), Positives = 32/129 (24%), Gaps = 37/129 (28%)

Query: 23  CLRYFFKAKT--TINYPFEK--GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78
              +     +     +P        +   RG+       +    CI C  C+  CP   I
Sbjct: 656 TFAHLHVPTSCRHCEHPHCMADCPPTAIHRGQDGEVYIDD---TCIGCGNCQRNCPYGVI 712

Query: 79  TIESGPRCHDGTRRTVRYDIDMI------------------------KCIYC-GL----- 108
            +E  P       +   +                             KC  C G+     
Sbjct: 713 RMEKEPPQKPSLWKWFLFGQGPGPGEPSHDWAYANATPGVEKAKRAVKCDMCSGIEGGPS 772

Query: 109 CQEACPVDA 117
           C  ACP  A
Sbjct: 773 CVRACPTGA 781


>gi|111220922|ref|YP_711716.1| ferredoxin [Frankia alni ACN14a]
 gi|111148454|emb|CAJ60125.1| Ferredoxin (partial match) [Frankia alni ACN14a]
          Length = 140

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 13/48 (27%), Positives = 18/48 (37%)

Query: 78  ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
            +               +  I   +CI CG C   CPVDAIV   + +
Sbjct: 15  RSCVDECPVDCVYEGRRKLYIHPEECIDCGACARVCPVDAIVWERDLD 62


>gi|46125447|ref|XP_387277.1| hypothetical protein FG07101.1 [Gibberella zeae PH-1]
          Length = 607

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 3/66 (4%)

Query: 69  CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP---NFE 125
           C   C      + SG  C +    +    I    CI CG+C + CP DAI       N E
Sbjct: 21  CRQECKKSCPVVRSGKLCIEVQPESKLAFISESLCIGCGICPKRCPFDAINIINLPTNLE 80

Query: 126 FATETR 131
                R
Sbjct: 81  NQVTHR 86


>gi|125972856|ref|YP_001036766.1| hydrogenase large subunit-like protein [Clostridium thermocellum
           ATCC 27405]
 gi|256005726|ref|ZP_05430681.1| Fe-S cluster domain protein [Clostridium thermocellum DSM 2360]
 gi|281417055|ref|ZP_06248075.1| Fe-S cluster domain protein [Clostridium thermocellum JW20]
 gi|125713081|gb|ABN51573.1| hydrogenase large subunit-like protein [Clostridium thermocellum
           ATCC 27405]
 gi|255990299|gb|EEU00426.1| Fe-S cluster domain protein [Clostridium thermocellum DSM 2360]
 gi|281408457|gb|EFB38715.1| Fe-S cluster domain protein [Clostridium thermocellum JW20]
 gi|316940906|gb|ADU74940.1| Fe-S cluster domain protein [Clostridium thermocellum DSM 1313]
          Length = 448

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 21/67 (31%), Gaps = 11/67 (16%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110
                    E +C  C  C   CP +AI +                 I   +CI CG C 
Sbjct: 3   PYFHSVTLDEVKCKGCTNCIKRCPTEAIRVRKSKA-----------RIINERCIDCGECI 51

Query: 111 EACPVDA 117
             CP  A
Sbjct: 52  RVCPYHA 58


>gi|332291297|ref|YP_004429906.1| hypothetical protein Krodi_0653 [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169383|gb|AEE18638.1| hypothetical protein Krodi_0653 [Krokinobacter diaphorus 4H-3-7-5]
          Length = 544

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 10/67 (14%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R +   R   NG  +CI+C  C   C           +           +I    C+ CG
Sbjct: 449 RFKSRFRITTNG-GQCISCGNCSTYCEQGIDVRAYAQKGE---------NIVRSSCVGCG 498

Query: 108 LCQEACP 114
           +C   CP
Sbjct: 499 VCSAVCP 505


>gi|325499672|gb|EGC97531.1| ferredoxin [Escherichia fergusonii ECD227]
          Length = 176

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 23/114 (20%), Positives = 37/114 (32%), Gaps = 9/114 (7%)

Query: 12  FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71
           + +E +   ++  R  F+A  +   P              AL        +C  C LC  
Sbjct: 7   YYQELMSHRYVSRRGLFRAFVSAARPVTTPILPVHSLPPGAL-PDAQFRVQCTQCDLCIN 65

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
            CP   +                +  I+   C  CGLC  AC  +A+     F+
Sbjct: 66  ACPMGILNRHEDGYP--------QLVIEFASCDGCGLCIAACSTEALRPQARFD 111


>gi|325264637|ref|ZP_08131367.1| conserved domain protein [Clostridium sp. D5]
 gi|324030299|gb|EGB91584.1| conserved domain protein [Clostridium sp. D5]
          Length = 56

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 11/65 (16%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + C++C  CE  CP  AI    G            Y ID   C+ CG C+ ACP
Sbjct: 1   MAHFINDECVSCGSCEGECPVGAIAEGDGK-----------YVIDADACVDCGACEGACP 49

Query: 115 VDAIV 119
             AI 
Sbjct: 50  TGAIQ 54


>gi|322379286|ref|ZP_08053672.1| Pyruvate ferrodoxin oxidoreductase (PorD) [Helicobacter suis HS1]
 gi|321148323|gb|EFX42837.1| Pyruvate ferrodoxin oxidoreductase (PorD) [Helicobacter suis HS1]
          Length = 142

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 10/59 (16%)

Query: 58  NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
           + +E CI C  C   C          P     +R      ID   C  CG+C + CP +
Sbjct: 53  HNKEVCINCFNCWVYC----------PDASILSREGKMSGIDYEHCKGCGVCVDVCPTN 101


>gi|320353241|ref|YP_004194580.1| cobyrinic acid ac-diamide synthase [Desulfobulbus propionicus DSM
           2032]
 gi|320121743|gb|ADW17289.1| cobyrinic acid ac-diamide synthase [Desulfobulbus propionicus DSM
           2032]
          Length = 288

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 11/63 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            E +C  C+ C  IC   A+ +              R  I    C  CG C   CP  AI
Sbjct: 63  NESKCTFCRKCSDICRFNALAV-----------VGKRVLIFAELCHSCGGCMLVCPEGAI 111

Query: 119 VEG 121
            E 
Sbjct: 112 TET 114


>gi|256830313|ref|YP_003159041.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfomicrobium baculatum DSM 4028]
 gi|256579489|gb|ACU90625.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfomicrobium baculatum DSM 4028]
          Length = 399

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 6/55 (10%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115
           + C  C+ C  ICP Q IT+ +           +R  ID  +C+ C LC+++CPV
Sbjct: 10  DYCTGCEACRNICPEQCITMVAD------YAGFLRPVIDADRCVGCLLCEKSCPV 58


>gi|304316437|ref|YP_003851582.1| sulfite reductase subunit C [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777939|gb|ADL68498.1| sulfite reductase, subunit C [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 337

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 26/87 (29%), Gaps = 8/87 (9%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P +         G   + +     +RCI CK C   C   A                 +
Sbjct: 152 CPNDCAKAHFNDFGIIGITKTEYDYDRCIGCKKCIEACKQHA--------TGVLYMVNGK 203

Query: 96  YDIDMIKCIYCGLCQEACPVDAIVEGP 122
            + D   C+ CG C   CP  A    P
Sbjct: 204 IEKDSCCCVGCGECALVCPTGAWSRNP 230


>gi|254805218|ref|YP_003083439.1| conserved hypothetical iron-sulphur protein [Neisseria meningitidis
           alpha14]
 gi|254668760|emb|CBA06642.1| conserved hypothetical iron-sulphur protein [Neisseria meningitidis
           alpha14]
 gi|254670258|emb|CBA05509.1| conserved hypothetical iron-sulphur protein [Neisseria meningitidis
           alpha153]
 gi|325136519|gb|EGC59123.1| iron-sulfur cluster binding protein [Neisseria meningitidis M0579]
          Length = 484

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 18/65 (27%), Gaps = 10/65 (15%)

Query: 62  RCIACKLCEAICPA-----QAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQE 111
           +CI C  C   CP       A    + P                       C  CG C E
Sbjct: 317 QCIRCGACMNHCPVYTRIGGAAYGTTYPGPIGEIISPHLLGLDATRDLPTACTMCGACVE 376

Query: 112 ACPVD 116
            CPV 
Sbjct: 377 VCPVR 381


>gi|256828932|ref|YP_003157660.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Desulfomicrobium baculatum DSM 4028]
 gi|256578108|gb|ACU89244.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Desulfomicrobium baculatum DSM 4028]
          Length = 271

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/119 (16%), Positives = 33/119 (27%), Gaps = 27/119 (22%)

Query: 39  EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98
             G+   R   + AL       ++C+ C  C   CP+ AI + +     D  R       
Sbjct: 175 VPGNIPYRDGVQPALISPETEADKCVLCGDCVRSCPSGAIKLVNDSVETDKMR------- 227

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIV 157
               C+ C  C   C   A +                    ++L  G     +      
Sbjct: 228 ----CLRCCACIRVCQAGARLMTH----------------PKILELGRTLHEKFAERRE 266


>gi|297566516|ref|YP_003685488.1| dihydroorotate dehydrogenase family protein [Meiothermus silvanus
           DSM 9946]
 gi|296850965|gb|ADH63980.1| dihydroorotate dehydrogenase family protein [Meiothermus silvanus
           DSM 9946]
          Length = 461

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 17/80 (21%), Positives = 24/80 (30%), Gaps = 18/80 (22%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID-----------------MI 101
             ++CI C LC   C   A         +    +   YD+                    
Sbjct: 341 DPDKCIKCNLCYVACNDTAHQCIDLVDANGNLVQPYSYDVRSNGRLEAVSTRPQPVVREE 400

Query: 102 KCIYCGLCQEACPVD-AIVE 120
            C+ C LC   CPV+  I  
Sbjct: 401 DCVGCRLCHNVCPVEGCIEM 420


>gi|261377740|ref|ZP_05982313.1| iron-sulfur cluster-binding protein [Neisseria cinerea ATCC 14685]
 gi|269146023|gb|EEZ72441.1| iron-sulfur cluster-binding protein [Neisseria cinerea ATCC 14685]
          Length = 484

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 18/65 (27%), Gaps = 10/65 (15%)

Query: 62  RCIACKLCEAICPA-----QAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQE 111
           +CI C  C   CP       A    + P                       C  CG C E
Sbjct: 317 QCIRCGACMNHCPVYTRIGGAAYGTTYPGPIGEIISPHLLGLDATRDLPTACTMCGACVE 376

Query: 112 ACPVD 116
            CPV 
Sbjct: 377 VCPVR 381


>gi|261365016|ref|ZP_05977899.1| iron-sulfur cluster-binding protein [Neisseria mucosa ATCC 25996]
 gi|288566603|gb|EFC88163.1| iron-sulfur cluster-binding protein [Neisseria mucosa ATCC 25996]
          Length = 484

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 18/65 (27%), Gaps = 10/65 (15%)

Query: 62  RCIACKLCEAICPA-----QAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQE 111
           +CI C  C   CP       A    + P                       C  CG C E
Sbjct: 317 QCIRCGACMNHCPVYTRIGGAAYGTTYPGPIGEIISPHLLGLDATRDLPTACTMCGACVE 376

Query: 112 ACPVD 116
            CPV 
Sbjct: 377 VCPVR 381


>gi|225682813|gb|EEH21097.1| aliphatic sulfonates import ATP-binding protein ssuB 1
           [Paracoccidioides brasiliensis Pb03]
          Length = 600

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 3/68 (4%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP---N 123
           K C   C      + +G  C + T  +    I    CI CG+C + CP  AI       N
Sbjct: 15  KKCRQECKKSCPVVRTGKLCIEVTPESKIAFISERLCIGCGICPKKCPFGAIHIINLPTN 74

Query: 124 FEFATETR 131
            E     R
Sbjct: 75  LETQVTHR 82


>gi|167044778|gb|ABZ09447.1| putative 4Fe-4S binding domain protein [uncultured marine
           microorganism HF4000_APKG8C21]
          Length = 416

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 21/93 (22%), Positives = 31/93 (33%), Gaps = 12/93 (12%)

Query: 56  YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI-------YCGL 108
                  C  C++C   CP +A+  E         R   +  +   +C         C +
Sbjct: 254 DYGIHRFCQQCQVCVNRCPGRALVKEK-----VWWRGVEKNKLIYDRCRPVMARYEGCAV 308

Query: 109 CQEACPVDAIVEGPNFEFATETRQELYYDKERL 141
           C + CPV      P  E   ET + L    E L
Sbjct: 309 CMKVCPVQRYGMKPVMEHYIETGEVLGKGTENL 341


>gi|197116430|ref|YP_002136857.1| heterodisulfide reductase subunit A [Geobacter bemidjiensis Bem]
 gi|197085790|gb|ACH37061.1| heterodisulfide reductase, subunit A [Geobacter bemidjiensis Bem]
          Length = 665

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
            E+ C+ C  C+ +CP  A+  E   R   G    V   ++   C  CG CQ  CP
Sbjct: 590 NEKYCVGCLACKKVCPYGAVE-EKEIRDRQGNLVKVVAYVNPGVCGGCGTCQATCP 644


>gi|222054475|ref|YP_002536837.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           FRC-32]
 gi|221563764|gb|ACM19736.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           FRC-32]
          Length = 368

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/63 (30%), Positives = 22/63 (34%), Gaps = 11/63 (17%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E C  C  C   C   AI I  G              ID  +C+ CG C  AC   A+  
Sbjct: 193 EFCTGCGACLKSCAHDAIAIIEGKAA-----------IDQEECVGCGRCVTACMQQAVNI 241

Query: 121 GPN 123
             N
Sbjct: 242 QWN 244


>gi|56477090|ref|YP_158679.1| putative iron-sulfur binding protein [Aromatoleum aromaticum EbN1]
 gi|56313133|emb|CAI07778.1| putative iron-sulfur binding protein [Aromatoleum aromaticum EbN1]
          Length = 689

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 17/104 (16%)

Query: 19  AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78
           A  L +R+          P E+   +                  C  C  C + CP+ A+
Sbjct: 521 ALELSIRHLL---AVAPQPVEEIPLAAGAPFGSVSVSD-----ACTLCMSCVSACPSGAL 572

Query: 79  TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122
           +  S         ++         C+ CGLC  +CP +A+   P
Sbjct: 573 SAASDAMRLGFIEKS---------CVQCGLCASSCPENAVTLMP 607


>gi|305666269|ref|YP_003862556.1| pyridine nucleotide-disulphide oxidoreductase domain-containing
           protein [Maribacter sp. HTCC2170]
 gi|88708260|gb|EAR00497.1| Pyridine nucleotide-disulphide oxidoreductase domain protein
           [Maribacter sp. HTCC2170]
          Length = 529

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 10/67 (14%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107
           R +   R   NG  +CI+C  C   C           +           +I    C+ CG
Sbjct: 438 RFKSRFRITTNG-GQCISCGNCSTYCEQGIDVRAYAQKGE---------NIVRSSCVGCG 487

Query: 108 LCQEACP 114
           +C   CP
Sbjct: 488 VCSAVCP 494


>gi|84393396|ref|ZP_00992155.1| electron transport complex protein RnfC [Vibrio splendidus 12B01]
 gi|84376005|gb|EAP92894.1| electron transport complex protein RnfC [Vibrio splendidus 12B01]
          Length = 967

 Score = 42.8 bits (99), Expect = 0.016,   Method: Composition-based stats.
 Identities = 25/105 (23%), Positives = 37/105 (35%), Gaps = 9/105 (8%)

Query: 62  RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121
            CI C  C   CPA  +  +               ++++  CI CG C   CP   I   
Sbjct: 377 ECIRCSACAEACPAS-LLPQQLQWHAKANELDKCEELNIKDCIECGACAFVCP-SEIPLV 434

Query: 122 PNFEFAT---ETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163
             +  A    +TR++     ER      R+E E    +  D   R
Sbjct: 435 QYYRQAKAEIKTRKDEATAAER---AKIRFE-EKNARMERDKAER 475


>gi|320535768|ref|ZP_08035850.1| ferredoxin [Treponema phagedenis F0421]
 gi|320147378|gb|EFW38912.1| ferredoxin [Treponema phagedenis F0421]
          Length = 56

 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 11/60 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           E CI C  C++ CP  AI+ ++               ID   CI CG C E CP  AI E
Sbjct: 7   EECINCGACKSECPVNAISEQTDMHV-----------IDAGLCISCGACAEVCPAQAISE 55


>gi|253581030|ref|ZP_04858291.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847693|gb|EES75662.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 57

 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 11/59 (18%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
           + C++C  CE+ CPA+AI+                Y ID   C+ CG C +ACP +AI 
Sbjct: 7   DECVSCGTCESECPAEAISQGDE-----------HYVIDADACLDCGTCADACPTEAIH 54


>gi|239907342|ref|YP_002954083.1| nitroreductase domain protein [Desulfovibrio magneticus RS-1]
 gi|239797208|dbj|BAH76197.1| nitroreductase domain protein [Desulfovibrio magneticus RS-1]
          Length = 260

 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 9/63 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             ERC A  LC A+CP+  +  ++  R      +          CI CG C   CP  A+
Sbjct: 7   DRERCNADGLCAAVCPSGCLEADADGRPVVAEEK---------LCIACGHCVAVCPKSAL 57

Query: 119 VEG 121
              
Sbjct: 58  TIS 60


>gi|269792171|ref|YP_003317075.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
           [Thermanaerovibrio acidaminovorans DSM 6589]
 gi|269099806|gb|ACZ18793.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein
           [Thermanaerovibrio acidaminovorans DSM 6589]
          Length = 444

 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 13/69 (18%)

Query: 46  RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105
               + +L R     +RC+ C  C+  C               G   +    +    CI 
Sbjct: 197 WILQKLSLTRVERHPDRCVNCGACDRAC-------------PMGITVSTAGRLSNGDCIS 243

Query: 106 CGLCQEACP 114
           CG C E+CP
Sbjct: 244 CGECVESCP 252


>gi|187779630|ref|ZP_02996103.1| hypothetical protein CLOSPO_03226 [Clostridium sporogenes ATCC
           15579]
 gi|187773255|gb|EDU37057.1| hypothetical protein CLOSPO_03226 [Clostridium sporogenes ATCC
           15579]
          Length = 285

 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 24/112 (21%), Positives = 34/112 (30%), Gaps = 20/112 (17%)

Query: 12  FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71
           F  E    F + L         +  P      S    G          EE+C AC +C  
Sbjct: 126 FGYELPSKFKITL---------VGCPNNCAKASINDIGIMGQAYVELNEEKCKACGICTK 176

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
            C  +A+T+E+                    C+ CG C   CP  A+     
Sbjct: 177 SCRQKAVTVENKKIV-----------YKKDLCVNCGKCATVCPFGAMAIKDQ 217


>gi|116748289|ref|YP_844976.1| hydrogenases, Fe-only [Syntrophobacter fumaroxidans MPOB]
 gi|116697353|gb|ABK16541.1| hydrogenases, Fe-only [Syntrophobacter fumaroxidans MPOB]
          Length = 576

 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 3/70 (4%)

Query: 59  GEERCIACKLCEAIC-PAQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115
              +CI C+ C ++C   Q +   +       T     ++  +    C+ CG C   CP 
Sbjct: 144 DPRKCILCRRCISVCSEVQGVKALTTGHRGFNTLIAPAFNERLANVECVQCGQCSLVCPT 203

Query: 116 DAIVEGPNFE 125
            AI E  + E
Sbjct: 204 GAIHEVDDTE 213


>gi|121607275|ref|YP_995082.1| RnfABCDGE type electron transport complex subunit B
           [Verminephrobacter eiseniae EF01-2]
 gi|121551915|gb|ABM56064.1| electron transport complex, RnfABCDGE type, B subunit
           [Verminephrobacter eiseniae EF01-2]
          Length = 220

 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 21/64 (32%), Positives = 24/64 (37%), Gaps = 10/64 (15%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              E+ CI C LC  +CP  AI   S             + I    C  C LC   CPVD
Sbjct: 87  FIDEDWCIGCTLCLKVCPTDAIVGASKM----------MHTIIERYCTGCELCLPVCPVD 136

Query: 117 AIVE 120
            I  
Sbjct: 137 CIAL 140


>gi|20808576|ref|NP_623747.1| pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin
           oxidoreductase, alpha subunit [Thermoanaerobacter
           tengcongensis MB4]
 gi|254479652|ref|ZP_05092953.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Carboxydibrachium pacificum DSM 12653]
 gi|20517204|gb|AAM25351.1| Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin
           oxidoreductases, alpha subunit [Thermoanaerobacter
           tengcongensis MB4]
 gi|214034406|gb|EEB75179.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Carboxydibrachium pacificum DSM 12653]
          Length = 583

 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 12/62 (19%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
            +E+C  C +C          I         +++   + ID  +C  C +CQ+ CP DAI
Sbjct: 526 DQEKCKKCGMC---LRIGCPAI---------SKKDGIFSIDPDQCTGCTVCQQVCPFDAI 573

Query: 119 VE 120
             
Sbjct: 574 EC 575


>gi|51245519|ref|YP_065403.1| iron-sulfur cluster-binding protein [Desulfotalea psychrophila
           LSv54]
 gi|50876556|emb|CAG36396.1| related to iron-sulfur cluster-binding protein [Desulfotalea
           psychrophila LSv54]
          Length = 401

 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 10/65 (15%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
              +C+ C LC  +C   A++++S  +            +D   C+ CG C  AC   A+
Sbjct: 221 NVHKCVGCGLCMELCQHGALSLDSNKKI----------QVDDQLCVGCGACLLACKTGAL 270

Query: 119 VEGPN 123
                
Sbjct: 271 QVNWE 275


>gi|114565955|ref|YP_753109.1| 4Fe-4S ferredoxin, iron-sulfur binding [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
 gi|114336890|gb|ABI67738.1| 4Fe-4S ferredoxin, iron-sulfur binding [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 300

 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 24/78 (30%), Gaps = 12/78 (15%)

Query: 51  HALRRYPNGEERCIACKLCEAICPA-QAITIESGPRCHDG-----------TRRTVRYDI 98
              R + +   RCI C  C   C A    T                         VR   
Sbjct: 176 ERYRFFEDILSRCIRCYACRQACVACNCRTCIFDETKPQWVGRETSISDNMMYHLVRASH 235

Query: 99  DMIKCIYCGLCQEACPVD 116
              +CI CG C+  CPV+
Sbjct: 236 MAGRCIECGECERVCPVN 253


>gi|124381513|ref|YP_001025976.1| iron-sulfur cluster-binding protein [Burkholderia mallei NCTC
           10229]
 gi|126447093|ref|YP_001078067.1| iron-sulfur cluster-binding protein [Burkholderia mallei NCTC
           10247]
 gi|254358967|ref|ZP_04975239.1| iron-sulfur cluster-binding protein [Burkholderia mallei
           2002721280]
 gi|126239947|gb|ABO03059.1| iron-sulfur cluster-binding protein [Burkholderia mallei NCTC
           10247]
 gi|148028154|gb|EDK86114.1| iron-sulfur cluster-binding protein [Burkholderia mallei
           2002721280]
 gi|261826356|gb|ABN00222.2| iron-sulfur cluster-binding protein [Burkholderia mallei NCTC
           10229]
          Length = 477

 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/105 (18%), Positives = 26/105 (24%), Gaps = 10/105 (9%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-QAIT 79
           +       +    ++ P E             L        RCI C  C   CP   A+ 
Sbjct: 271 YTTFSTGPRRGDDLDGPQEYHVVLVDNGRTRMLAGEFRDMLRCIRCGACMNHCPVYGAVG 330

Query: 80  IESGPRCHDGTR---------RTVRYDIDMIKCIYCGLCQEACPV 115
             +    + G                      C   G C E CPV
Sbjct: 331 GHAYGWVYPGPMGAVLTPLLQGIEHDTDLPNACTLNGRCAEVCPV 375



 Score = 35.1 bits (79), Expect = 3.5,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNF 124
           M++CI CG C   CPV   V G  +
Sbjct: 310 MLRCIRCGACMNHCPVYGAVGGHAY 334


>gi|322371960|ref|ZP_08046502.1| hypothetical protein ZOD2009_20702 [Haladaptatus paucihalophilus
           DX253]
 gi|320548382|gb|EFW90054.1| hypothetical protein ZOD2009_20702 [Haladaptatus paucihalophilus
           DX253]
          Length = 734

 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 26/116 (22%), Positives = 30/116 (25%), Gaps = 27/116 (23%)

Query: 27  FFKAKTT-----INYPFEKGSTSPRFR---------GEHALRRYPN--GEERCIACKLCE 70
            F   T        +P E G    R R         G  A+R          CI C  C 
Sbjct: 271 LFSPPTDSPTLDFEHPDEPGFGPQRDREFHLVLIDNGRMAMREDDQLRETLYCIRCGACA 330

Query: 71  AICPA------QAITIESGPRCHDGTRRTVRYDI-----DMIKCIYCGLCQEACPV 115
             C         A   E+          T  + I         C  C  C  ACPV
Sbjct: 331 NSCANFQHVGGHAFGGETYTGGIATGWETGVHGIESAGEFNDLCTGCSRCVNACPV 386


>gi|317030846|ref|XP_001392338.2| translation initiation factor RLI1 [Aspergillus niger CBS 513.88]
          Length = 587

 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 3/68 (4%)

Query: 67  KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP---N 123
           K C   C      + +G  C + T  +    I    CI CG+C + CP  AI       N
Sbjct: 2   KKCRQECKKSCPVVRTGKLCIEVTPESKIAFISERLCIGCGICPKKCPFGAIHIINLPTN 61

Query: 124 FEFATETR 131
            E     R
Sbjct: 62  LETQVTHR 69


>gi|315925133|ref|ZP_07921350.1| ferredoxin hydrogenase [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622032|gb|EFV01996.1| ferredoxin hydrogenase [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 580

 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/80 (22%), Positives = 25/80 (31%), Gaps = 5/80 (6%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDMIKC 103
           R  +          +CI C  C  +C           E             R +I+   C
Sbjct: 130 RPWNRDFPLIRDAAKCIKCMRCIQVCDKMQSLGVWDFEGTGSRSTVNVSHAR-NIEDAGC 188

Query: 104 IYCGLCQEACPVDAIVEGPN 123
             CG C   CPV A+ E  +
Sbjct: 189 SLCGQCVTHCPVGALSERDD 208


>gi|315425177|dbj|BAJ46847.1| Fe-S oxidoreductase [Candidatus Caldiarchaeum subterraneum]
          Length = 610

 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 40/123 (32%), Gaps = 19/123 (15%)

Query: 47  FRGEHALRRYPN-GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY--------- 96
           FR    L      G + C  C  CEA CPA A      PR      R   +         
Sbjct: 218 FRSLTELGWMEKLGLDACTDCGRCEAACPAYAAGTPLSPRDIVQKLRRQLWRGDGLDEDV 277

Query: 97  -------DIDMIKCIYCGLCQEACPVDAIVEGPNFEF--ATETRQELYYDKERLLNNGDR 147
                  + ++  C  C  C EACPV         E   A     +L   K  +L N  R
Sbjct: 278 FASGLIDEEEVWACTTCSACIEACPVLIRPMDYILEMRRALTLEGKLDKRKTAMLTNLSR 337

Query: 148 WES 150
           + +
Sbjct: 338 YGN 340


>gi|313898326|ref|ZP_07831863.1| 4Fe-4S binding domain protein [Clostridium sp. HGF2]
 gi|312956708|gb|EFR38339.1| 4Fe-4S binding domain protein [Clostridium sp. HGF2]
          Length = 254

 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 12/73 (16%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104
             ++  + +   P+  + C+ C  C A CP QAI I+   +                +CI
Sbjct: 165 HPYKPYNGVPLKPSANQSCMQCGQCAAQCPVQAIPIKHPEKTD------------TDRCI 212

Query: 105 YCGLCQEACPVDA 117
            C  C   CPV A
Sbjct: 213 SCMRCIAVCPVHA 225


>gi|310777823|ref|YP_003966156.1| electron transport complex, RnfABCDGE type, C subunit [Ilyobacter
           polytropus DSM 2926]
 gi|309747146|gb|ADO81808.1| electron transport complex, RnfABCDGE type, C subunit [Ilyobacter
           polytropus DSM 2926]
          Length = 436

 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 31/95 (32%), Gaps = 8/95 (8%)

Query: 33  TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92
           T N P  KG++      +     Y    + CI C  C   CP   +              
Sbjct: 337 TENVPVVKGTSGLLALTKEETNPYK--PKSCILCGKCVKACPINLLPNMYAKLARFKQWE 394

Query: 93  TVRYDIDMIKCIYCGLCQEACP-----VDAIVEGP 122
            +  +  M  CI CG C   CP      +AI  G 
Sbjct: 395 EMGKNHLMD-CIECGSCSYICPANRPLTEAIKIGK 428


>gi|309379694|emb|CBX21683.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 484

 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 18/65 (27%), Gaps = 10/65 (15%)

Query: 62  RCIACKLCEAICPA-----QAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQE 111
           +CI C  C   CP       A    + P                       C  CG C E
Sbjct: 317 QCIRCGACMNHCPVYTRIGGAAYGTTYPGPIGEIISPHLLGLDATRDLPTACTMCGACVE 376

Query: 112 ACPVD 116
            CPV 
Sbjct: 377 VCPVR 381


>gi|291542068|emb|CBL15178.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23
           kD subunit (chain I) [Ruminococcus bromii L2-63]
          Length = 56

 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 11/63 (17%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
                 + CI C  C   CP  AI+   G            Y+I+   C+ CG C E CP
Sbjct: 1   MAYTISDDCIMCGACADNCPCDAISEGDGK-----------YEINADACVDCGSCAEVCP 49

Query: 115 VDA 117
           V A
Sbjct: 50  VGA 52


>gi|289662868|ref|ZP_06484449.1| ferredoxin [Xanthomonas campestris pv. vasculorum NCPPB702]
          Length = 139

 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 27/81 (33%), Positives = 31/81 (38%), Gaps = 11/81 (13%)

Query: 43  TSPRFRGEHAL-RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101
              R RG H L +     E  CI C  C   CP  AI          G  + +   I  +
Sbjct: 67  PYDRSRGTHKLPQVAWIVEADCIGCTKCIQACPVDAIV---------GGAKHMHTVIAPL 117

Query: 102 KCIYCGLCQEACPVDAIVEGP 122
            C  C LC  ACPVD I   P
Sbjct: 118 -CTGCELCLPACPVDCIELYP 137



 Score = 35.8 bits (81), Expect = 2.0,   Method: Composition-based stats.
 Identities = 13/38 (34%), Positives = 15/38 (39%)

Query: 81  ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               R     +      I    CI C  C +ACPVDAI
Sbjct: 66  CPYDRSRGTHKLPQVAWIVEADCIGCTKCIQACPVDAI 103


>gi|255528042|ref|ZP_05394877.1| dihydroorotate dehydrogenase family protein [Clostridium
           carboxidivorans P7]
 gi|296188156|ref|ZP_06856548.1| dihydropyrimidine dehydrogenase [Clostridium carboxidivorans P7]
 gi|255508256|gb|EET84661.1| dihydroorotate dehydrogenase family protein [Clostridium
           carboxidivorans P7]
 gi|296047282|gb|EFG86724.1| dihydropyrimidine dehydrogenase [Clostridium carboxidivorans P7]
          Length = 412

 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 14/86 (16%)

Query: 52  ALRRYPNGEERCIACKLCEAICP---AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108
            +      +++CI C  C   C     QA+  +   R     +           C+ C L
Sbjct: 333 YIVYPNYEQDKCIGCGRCYISCYDGGHQAVVWDEEKRRPSLNK---------DNCVGCHL 383

Query: 109 CQEACP-VDAIVEGP-NFEFATETRQ 132
           C   CP    I +G   F+   E+R+
Sbjct: 384 CSMVCPIEGCITKGELTFKNGAESRE 409


>gi|282600001|ref|ZP_05972682.2| putative pyruvate formate-lyase activating enzyme [Providencia
           rustigianii DSM 4541]
 gi|282566719|gb|EFB72254.1| putative pyruvate formate-lyase activating enzyme [Providencia
           rustigianii DSM 4541]
          Length = 317

 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/87 (19%), Positives = 27/87 (31%), Gaps = 10/87 (11%)

Query: 27  FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC 86
            F     I  P+         + +           +C+ C  C  +CPA    + +  + 
Sbjct: 30  IFLKGCNIRCPWCANPEGLSSQFQVMFSHD-----KCVGCGKCVDVCPAGIHYMTTNEQG 84

Query: 87  HDGTRRTVRYDIDMIKCIYCGLCQEAC 113
               R     D     CI C  C+E C
Sbjct: 85  EKIHRVNRSID-----CIGCRKCEEVC 106



 Score = 38.2 bits (87), Expect = 0.40,   Method: Composition-based stats.
 Identities = 16/70 (22%), Positives = 21/70 (30%), Gaps = 8/70 (11%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
               +G    I  K C   CP  A          +G     +      KC+ CG C + C
Sbjct: 20  IYDGDGIRTLIFLKGCNIRCPWCAN--------PEGLSSQFQVMFSHDKCVGCGKCVDVC 71

Query: 114 PVDAIVEGPN 123
           P        N
Sbjct: 72  PAGIHYMTTN 81


>gi|167838795|ref|ZP_02465613.1| iron-sulfur cluster-binding protein [Burkholderia thailandensis
           MSMB43]
          Length = 478

 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/105 (19%), Positives = 26/105 (24%), Gaps = 10/105 (9%)

Query: 21  FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-QAIT 79
           +       K    ++ P E             L        RCI C  C   CP   A+ 
Sbjct: 271 YTTFSTGPKRGDDLDGPQEYHVVLVDNGRTRMLAGEFRDMLRCIRCGACMNHCPVYGAVG 330

Query: 80  IESGPRCHDGTR---------RTVRYDIDMIKCIYCGLCQEACPV 115
             +    + G                      C   G C E CPV
Sbjct: 331 GHAYGWVYPGPMGAVLTPLLQGIEHDTDLPNACTLNGRCAEVCPV 375



 Score = 35.1 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 14/25 (56%)

Query: 100 MIKCIYCGLCQEACPVDAIVEGPNF 124
           M++CI CG C   CPV   V G  +
Sbjct: 310 MLRCIRCGACMNHCPVYGAVGGHAY 334


>gi|167772620|ref|ZP_02444673.1| hypothetical protein ANACOL_04001 [Anaerotruncus colihominis DSM
           17241]
 gi|167665098|gb|EDS09228.1| hypothetical protein ANACOL_04001 [Anaerotruncus colihominis DSM
           17241]
          Length = 371

 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 21/78 (26%), Gaps = 10/78 (12%)

Query: 43  TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102
                     L          I C LC A C    I + S             Y +D   
Sbjct: 301 IPFEDIPAQQLVCAFQNPCTRIDCGLCAASCLGGGIRLSSDG----------FYTVDPDA 350

Query: 103 CIYCGLCQEACPVDAIVE 120
           C  CGLC   CP   I  
Sbjct: 351 CTGCGLCAARCPEHRIRL 368


>gi|164688745|ref|ZP_02212773.1| hypothetical protein CLOBAR_02392 [Clostridium bartlettii DSM
           16795]
 gi|164602221|gb|EDQ95686.1| hypothetical protein CLOBAR_02392 [Clostridium bartlettii DSM
           16795]
          Length = 573

 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 17/74 (22%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP------VD 116
           C  C  C  +CP  AI I+ G             DI M +CI CG C +ACP        
Sbjct: 10  CRGCYACVRVCPVDAIVIKGGQA-----------DILMDRCILCGRCSKACPQHYRVEKT 58

Query: 117 AIVEGPNFEFATET 130
           +I    NF  + ET
Sbjct: 59  SINSVKNFIKSGET 72


>gi|157373408|ref|YP_001472008.1| putative pyruvate formate lyase activating enzyme [Shewanella
           sediminis HAW-EB3]
 gi|157315782|gb|ABV34880.1| conserved hypothetical pyruvate formate lyase activating enzyme
           [Shewanella sediminis HAW-EB3]
          Length = 298

 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 7/73 (9%)

Query: 55  RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114
             P+  + C +C  C A CP QA+++ES                +   C  C  C   CP
Sbjct: 45  HNPHTIDMCDSCGDCIAHCPTQALSMESIDGKDAIRW-------NSDLCSGCDTCLAVCP 97

Query: 115 VDAIVEGPNFEFA 127
             +  +   +   
Sbjct: 98  KQSTPKTQEYNVT 110


>gi|120601356|ref|YP_965756.1| FAD linked oxidase domain-containing protein [Desulfovibrio
           vulgaris DP4]
 gi|120561585|gb|ABM27329.1| FAD linked oxidase domain protein [Desulfovibrio vulgaris DP4]
          Length = 1187

 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 20/87 (22%), Gaps = 22/87 (25%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQ----------------------AITIESGPRCHD 88
             L       + C  C  C+ +CP                        A+      +   
Sbjct: 716 ERLITLLANVQICTRCGKCKQVCPMHYPEQSLQHYPRNKNIALGALIEAVYYSQVNKGRP 775

Query: 89  GTRRTVRYDIDMIKCIYCGLCQEACPV 115
                      M  C  CG C   CPV
Sbjct: 776 DPLLLTEVRTMMEHCTGCGKCAAVCPV 802


>gi|91773531|ref|YP_566223.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methanococcoides burtonii
           DSM 6242]
 gi|91712546|gb|ABE52473.1| 4Fe-4S ferredoxin, iron-sulfur protein [Methanococcoides burtonii
           DSM 6242]
          Length = 58

 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 10/62 (16%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + C+ C  C   CP++AI+++                ++  +CI CG C ++CP DAI
Sbjct: 6   NRDECVGCGTCVDDCPSEAISMDGENIAV----------VNADECIDCGACVDSCPTDAI 55

Query: 119 VE 120
             
Sbjct: 56  SM 57


>gi|74318301|ref|YP_316041.1| adenylylsulfate reductase subunit beta [Thiobacillus denitrificans
           ATCC 25259]
 gi|74057796|gb|AAZ98236.1| adenylylsulfate reductase, beta subunit [Thiobacillus denitrificans
           ATCC 25259]
          Length = 160

 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 8/68 (11%)

Query: 60  EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119
             RC  C  C  ICP+  + I+   R          Y+I+   C  C  C +ACP+DAI 
Sbjct: 7   MTRCDGCGYCVDICPSDIMHIDKVTRRA--------YNIEPNMCWECYSCVKACPMDAID 58

Query: 120 EGPNFEFA 127
                EFA
Sbjct: 59  VRGYAEFA 66


>gi|66803577|ref|XP_635627.1| RNaseL inhibitor-like protein [Dictyostelium discoideum AX4]
 gi|18874396|gb|AAL78685.1| RNaseL inhibitor-like protein ABCE.1 [Dictyostelium discoideum]
 gi|60463939|gb|EAL62102.1| RNaseL inhibitor-like protein [Dictyostelium discoideum AX4]
          Length = 603

 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 1/71 (1%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
           A+R      +RC   K C   C      ++ G  C +    +    I    C  CG+C +
Sbjct: 5   AIRIAIVNADRCKP-KKCSQECKKYCPVVKMGKLCIEVKPTSKMSYISEELCNGCGICVK 63

Query: 112 ACPVDAIVEGP 122
            CP +AI    
Sbjct: 64  KCPFEAIQIIN 74


>gi|302392576|ref|YP_003828396.1| glutamate synthase (NADPH) GltB2 subunit [Acetohalobium arabaticum
           DSM 5501]
 gi|302204653|gb|ADL13331.1| glutamate synthase (NADPH) GltB2 subunit [Acetohalobium arabaticum
           DSM 5501]
          Length = 500

 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 12/85 (14%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA- 117
             ++CI C++CE  C  +    +          +    DI+   C+ C  C   CP +A 
Sbjct: 15  NMDKCIECQVCERQCANEVHWYDEDLE------KMRAEDIN---CVNCHRCVALCPTNAL 65

Query: 118 -IVEGP-NFEFATETRQELYYDKER 140
            I E P  ++  +   +E+  + ++
Sbjct: 66  VIKEYPLEYKQNSNWTEEMITNIQK 90


>gi|296315293|ref|ZP_06865234.1| iron-sulfur cluster-binding protein [Neisseria polysaccharea ATCC
           43768]
 gi|296837792|gb|EFH21730.1| iron-sulfur cluster-binding protein [Neisseria polysaccharea ATCC
           43768]
          Length = 484

 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/65 (24%), Positives = 18/65 (27%), Gaps = 10/65 (15%)

Query: 62  RCIACKLCEAICPA-----QAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQE 111
           +CI C  C   CP       A    + P                       C  CG C E
Sbjct: 317 QCIRCGACMNHCPVYTRIGGAAYGTTYPGPIGEIISPHLLGLDATRDLPTACTMCGACVE 376

Query: 112 ACPVD 116
            CPV 
Sbjct: 377 VCPVR 381


>gi|256842119|ref|ZP_05547624.1| conserved hypothetical protein [Parabacteroides sp. D13]
 gi|256736435|gb|EEU49764.1| conserved hypothetical protein [Parabacteroides sp. D13]
          Length = 258

 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 22/89 (24%), Positives = 29/89 (32%), Gaps = 12/89 (13%)

Query: 36  YPFEKGS-TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94
            PF K     P F             E C++C +C  ICP   I++    +         
Sbjct: 168 VPFLKSYLVYPLFVNFAIGSNRFYATETCVSCGICAKICPTGTISLSDDRKPEW------ 221

Query: 95  RYDIDMIKCIYCGLCQEACPVDAIVEGPN 123
                   C+ C  C   CPV AI  G  
Sbjct: 222 -----ADTCVQCVACIHRCPVRAIEYGKI 245


>gi|227538831|ref|ZP_03968880.1| hypothetical protein HMPREF0765_3075 [Sphingobacterium spiritivorum
           ATCC 33300]
 gi|227241340|gb|EEI91355.1| hypothetical protein HMPREF0765_3075 [Sphingobacterium spiritivorum
           ATCC 33300]
          Length = 308

 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 2/66 (3%)

Query: 53  LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112
           L      +E C     C   CP  ++++  G    +G   +    +D+  CI CGLC E 
Sbjct: 13  LDNISLNQEACDGLGYCLPACPMMSLSLVEG--YVNGYFNSQTLFVDLGTCIICGLCAEV 70

Query: 113 CPVDAI 118
           CP  AI
Sbjct: 71  CPNQAI 76


>gi|171185947|ref|YP_001794866.1| putative ATPase RIL [Thermoproteus neutrophilus V24Sta]
 gi|170935159|gb|ACB40420.1| ABC transporter related [Thermoproteus neutrophilus V24Sta]
          Length = 590

 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/60 (26%), Positives = 20/60 (33%), Gaps = 2/60 (3%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
             + C   K C   C        SG        +  +  I    CI CG+C   CP  AI
Sbjct: 8   DRDACQP-KKCGQECVKYCPVNRSGKVV-YIDEQLKKAVISEALCIGCGICVHKCPFQAI 65


>gi|160895196|ref|ZP_02075968.1| hypothetical protein CLOL250_02755 [Clostridium sp. L2-50]
 gi|156863075|gb|EDO56506.1| hypothetical protein CLOL250_02755 [Clostridium sp. L2-50]
          Length = 263

 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/83 (24%), Positives = 27/83 (32%), Gaps = 11/83 (13%)

Query: 36  YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95
            P++          E            CI C LC   C   A++++              
Sbjct: 191 VPYDAPHRVRCNSKEKGKEVKAVCSAGCIGCSLCVRSCEFDAVSVDQNLAH--------- 241

Query: 96  YDIDMIKCIYCGLCQEACPVDAI 118
             ID  KC +CG C   CPV  I
Sbjct: 242 --IDYDKCTHCGACARKCPVKII 262



 Score = 35.8 bits (81), Expect = 1.7,   Method: Composition-based stats.
 Identities = 17/64 (26%), Positives = 22/64 (34%), Gaps = 11/64 (17%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118
               C     C+A+C   AI I  G              ++  KC  CG C + CP   I
Sbjct: 140 CTYGCTGYGSCKAVCEFGAIDIIDGIAV-----------VNEEKCKACGKCVDVCPRHLI 188

Query: 119 VEGP 122
              P
Sbjct: 189 ELVP 192



 Score = 35.1 bits (79), Expect = 3.4,   Method: Composition-based stats.
 Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 5/78 (6%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEAC 113
            EE+C AC  C  +CP   I +      H        +      +    CI C LC  +C
Sbjct: 169 NEEKCKACGKCVDVCPRHLIELVPYDAPHRVRCNSKEKGKEVKAVCSAGCIGCSLCVRSC 228

Query: 114 PVDAIVEGPNFEFATETR 131
             DA+    N       +
Sbjct: 229 EFDAVSVDQNLAHIDYDK 246


>gi|222053239|ref|YP_002535601.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           FRC-32]
 gi|221562528|gb|ACM18500.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp.
           FRC-32]
          Length = 613

 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 17/92 (18%), Positives = 25/92 (27%), Gaps = 15/92 (16%)

Query: 48  RGEHALRRYPNGEERCIACKLCEAICPAQAITI---------------ESGPRCHDGTRR 92
           R      +      RC+ C  C   C   A+ +                       G + 
Sbjct: 516 RCRQCSIQTVFDRSRCLRCGTCVDTCVNGALRLVRLADIQGDGNLEKLTDALEKSSGKKG 575

Query: 93  TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124
                 D  +C  CG+C   CP  AI     +
Sbjct: 576 MTAIIKDDSRCASCGMCARRCPGGAITMAEFY 607


>gi|104782302|ref|YP_608800.1| dihydropyrimidine dehydrogenase [Pseudomonas entomophila L48]
 gi|95111289|emb|CAK16009.1| putative dihydroorotate dehydrogenase, FMN-linked, 4Fe-4S
           ferredoxin-type protein [Pseudomonas entomophila L48]
          Length = 424

 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 57  PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116
              +  CI C  C   C   +    +     DGT     Y +   +C+ C LCQ  CPV+
Sbjct: 339 QIDQAACIGCGRCHIACEDTSHQAIASTLKDDGTH---SYSVVEEECVGCNLCQITCPVE 395

Query: 117 -AIVE 120
             I  
Sbjct: 396 SCIEM 400


>gi|46581474|ref|YP_012282.1| oxidoreductase [Desulfovibrio vulgaris str. Hildenborough]
 gi|46450896|gb|AAS97542.1| oxidoreductase, FAD/iron-sulfur cluster-binding domain protein
           [Desulfovibrio vulgaris str. Hildenborough]
 gi|311235126|gb|ADP87980.1| FAD linked oxidase domain protein [Desulfovibrio vulgaris RCH1]
          Length = 1187

 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/87 (17%), Positives = 20/87 (22%), Gaps = 22/87 (25%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQ----------------------AITIESGPRCHD 88
             L       + C  C  C+ +CP                        A+      +   
Sbjct: 716 ERLITLLANVQICTRCGKCKQVCPMHYPEQSLQHYPRNKNIALGALIEAVYYSQVNKGRP 775

Query: 89  GTRRTVRYDIDMIKCIYCGLCQEACPV 115
                      M  C  CG C   CPV
Sbjct: 776 DPLLLTEVRTMMEHCTGCGKCAAVCPV 802


>gi|332665607|ref|YP_004448395.1| glutamate synthase (NADPH) [Haliscomenobacter hydrossis DSM 1100]
 gi|332334421|gb|AEE51522.1| Glutamate synthase (NADPH) [Haliscomenobacter hydrossis DSM 1100]
          Length = 598

 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 22/83 (26%), Positives = 25/83 (30%), Gaps = 21/83 (25%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRR---------------------TVRYDID 99
            RCI C  C  ICP   IT  +     D   R                           D
Sbjct: 499 NRCIECDACVDICPTSCITFTTNGEEDDLRTRLNAPALNLSQDLYVSDLLPATQRVMVKD 558

Query: 100 MIKCIYCGLCQEACPVDAIVEGP 122
              C++CGLC E CP  A     
Sbjct: 559 EDVCLHCGLCAERCPTAAWDMQK 581



 Score = 39.3 bits (90), Expect = 0.19,   Method: Composition-based stats.
 Identities = 9/27 (33%), Positives = 11/27 (40%)

Query: 99  DMIKCIYCGLCQEACPVDAIVEGPNFE 125
              +CI C  C + CP   I    N E
Sbjct: 497 YTNRCIECDACVDICPTSCITFTTNGE 523


>gi|325662495|ref|ZP_08151098.1| hypothetical protein HMPREF0490_01838 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325471191|gb|EGC74416.1| hypothetical protein HMPREF0490_01838 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 584

 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/92 (19%), Positives = 31/92 (33%)

Query: 34  INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93
           +  PF++      +  +  L R  +   +C+ C        +  I              +
Sbjct: 122 LEVPFQQELEQTPWNKDFPLIRDSSKCIKCMRCIQVCDKIQSLNIWDVESTGSRTTVHVS 181

Query: 94  VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125
               I+   C  CG C   CPV A+ E  + E
Sbjct: 182 KNRKIEDADCSLCGQCITHCPVGALRERDDTE 213


>gi|301064301|ref|ZP_07204735.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
 gi|300441580|gb|EFK05911.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2]
          Length = 266

 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/74 (24%), Positives = 23/74 (31%), Gaps = 10/74 (13%)

Query: 51  HALRRYPNGEERCIACKLCEAICPAQAITIESGPR----------CHDGTRRTVRYDIDM 100
                +     RCI C  C  +CP       +                      R    +
Sbjct: 151 ERFAFWKETFSRCIKCYGCRDVCPMCFCKECALEDDNLVATGNIPPEIPVFHVTRAIHMV 210

Query: 101 IKCIYCGLCQEACP 114
            +CI CGLC EACP
Sbjct: 211 GRCIDCGLCNEACP 224


>gi|296448076|ref|ZP_06889979.1| formate dehydrogenase, alpha subunit [Methylosinus trichosporium
           OB3b]
 gi|296254433|gb|EFH01557.1| formate dehydrogenase, alpha subunit [Methylosinus trichosporium
           OB3b]
          Length = 959

 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/79 (18%), Positives = 24/79 (30%), Gaps = 3/79 (3%)

Query: 45  PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMI 101
                + +   +     +CI C  C   C     T      G          +       
Sbjct: 162 EWMPKDESNPYFTYDPSKCIVCNRCVRACEETQGTFALTIDGRGFDSRVSPGMAEAFMES 221

Query: 102 KCIYCGLCQEACPVDAIVE 120
           +C+ CG C +ACP   + E
Sbjct: 222 ECVSCGACVQACPTATLTE 240


>gi|291545260|emb|CBL18369.1| 4Fe-4S binding domain [Ruminococcus sp. 18P13]
          Length = 56

 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 11/57 (19%)

Query: 61  ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117
           + CI C  CE+ CP  AI+                Y ID   CI CG C   CPV A
Sbjct: 7   DDCIMCGACESECPVSAISAGDSK-----------YVIDADTCIECGACAGVCPVSA 52


>gi|266619566|ref|ZP_06112501.1| conserved domain protein [Clostridium hathewayi DSM 13479]
 gi|288868851|gb|EFD01150.1| conserved domain protein [Clostridium hathewayi DSM 13479]
          Length = 56

 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 24/58 (41%), Positives = 27/58 (46%), Gaps = 11/58 (18%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           C++C  CE  CP  AI+   G            Y ID   CI CG C  ACPV AI E
Sbjct: 9   CVSCGTCEGECPVSAISEGEGQ-----------YVIDADTCISCGTCAGACPVGAISE 55


>gi|261251988|ref|ZP_05944562.1| polyferredoxin NapH (periplasmic nitrate reductase) [Vibrio
           orientalis CIP 102891]
 gi|260938861|gb|EEX94849.1| polyferredoxin NapH (periplasmic nitrate reductase) [Vibrio
           orientalis CIP 102891]
          Length = 283

 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 21/73 (28%), Gaps = 8/73 (10%)

Query: 52  ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111
            +R      E C  C  C  +C          P       +     +    C+ CG C +
Sbjct: 214 VIRVTATNREACTKCMDCYNVC--------PEPVVLRQPLKEGDRRVMDQNCMSCGRCID 265

Query: 112 ACPVDAIVEGPNF 124
            CP   +     F
Sbjct: 266 VCPEHVLEFKTIF 278


>gi|257440407|ref|ZP_05616162.1| electron transport complex, RnfABCDGE type, B subunit
           [Faecalibacterium prausnitzii A2-165]
 gi|257197156|gb|EEU95440.1| electron transport complex, RnfABCDGE type, B subunit
           [Faecalibacterium prausnitzii A2-165]
          Length = 305

 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/79 (24%), Positives = 26/79 (32%), Gaps = 11/79 (13%)

Query: 40  KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99
           +         +            CIAC +CE  C   AI +  G              +D
Sbjct: 191 RKPVVMCSNQDKGAVANKLCTTSCIACGMCERTCKFDAIHVVDG-----------VARVD 239

Query: 100 MIKCIYCGLCQEACPVDAI 118
             KC  CG+C + CP   I
Sbjct: 240 YDKCKGCGMCAQKCPKHII 258



 Score = 37.0 bits (84), Expect = 0.93,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 20/58 (34%), Gaps = 11/58 (18%)

Query: 63  CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
           CI    C  +C   AI I  G              +D  KC  CG C   CP   I+ 
Sbjct: 139 CIGLGDCTKVCKFDAIHIVDG-----------VAKVDKDKCTGCGACANICPKHVIMI 185



 Score = 36.2 bits (82), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 6/67 (8%)

Query: 59  GEERCIACKLCEAICPAQAITIESGPRC------HDGTRRTVRYDIDMIKCIYCGLCQEA 112
            +++C  C  C  ICP   I I++G          +  +  V   +    CI CG+C+  
Sbjct: 164 DKDKCTGCGACANICPKHVIMIDAGGPRKPVVMCSNQDKGAVANKLCTTSCIACGMCERT 223

Query: 113 CPVDAIV 119
           C  DAI 
Sbjct: 224 CKFDAIH 230


>gi|255658485|ref|ZP_05403894.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Mitsuokella multacida DSM 20544]
 gi|260849283|gb|EEX69290.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit
           [Mitsuokella multacida DSM 20544]
          Length = 614

 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/54 (29%), Positives = 19/54 (35%), Gaps = 4/54 (7%)

Query: 73  CPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACPVDAIVEGP 122
               A           G    V  D    ID  +C  CG+C + CP DAI   P
Sbjct: 552 VLQDACRKCKKCIREIGCPGIVVEDGNIKIDASQCTGCGICADICPFDAIEVTP 605


>gi|255940124|ref|XP_002560831.1| Pc16g04800 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211585454|emb|CAP93150.1| Pc16g04800 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 715

 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/81 (24%), Positives = 28/81 (34%), Gaps = 4/81 (4%)

Query: 54  RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113
           R      ++C   K C   C      + +G  C +    +    I    CI CG+C + C
Sbjct: 7   RIAIINSDKCKP-KKCRQECKKSCPVVRTGKLCIEVDPSSKIAFISERLCIGCGICPKKC 65

Query: 114 PVDAIVEGP---NFEFATETR 131
           P  AI       N E     R
Sbjct: 66  PFGAIHIINLPTNLETQVTHR 86


>gi|168185057|ref|ZP_02619721.1| sulfite/nitrite reductase family protein [Clostridium botulinum Bf]
 gi|182701745|ref|ZP_02615013.2| sulfite/nitrite reductase family protein [Clostridium botulinum
           NCTC 2916]
 gi|226949020|ref|YP_002804111.1| sulfite/nitrite reductase family protein [Clostridium botulinum A2
           str. Kyoto]
 gi|237795186|ref|YP_002862738.1| sulfite/nitrite reductase family protein [Clostridium botulinum Ba4
           str. 657]
 gi|182668789|gb|EDT80767.1| sulfite/nitrite reductase family protein [Clostridium botulinum
           NCTC 2916]
 gi|182671886|gb|EDT83847.1| sulfite/nitrite reductase family protein [Clostridium botulinum Bf]
 gi|226841058|gb|ACO83724.1| sulfite/nitrite reductase family protein [Clostridium botulinum A2
           str. Kyoto]
 gi|229262897|gb|ACQ53930.1| sulfite/nitrite reductase family protein [Clostridium botulinum Ba4
           str. 657]
          Length = 284

 Score = 42.8 bits (99), Expect = 0.017,   Method: Composition-based stats.
 Identities = 24/109 (22%), Positives = 35/109 (32%), Gaps = 20/109 (18%)

Query: 12  FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71
           F  E    F + L         +  P      S    G          EE+C AC +C  
Sbjct: 126 FGYELPSKFKITL---------VGCPNNCAKASINDIGIMGQAYVEFNEEKCKACGICTK 176

Query: 72  ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120
            C  +A+T+E+                    C+ CG C   CP +A+  
Sbjct: 177 SCRQKAVTVENNKIV-----------YKKDLCVNCGKCATVCPFEAMTI 214


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.316    0.131    0.451 

Lambda     K      H
   0.267   0.0401    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,727,835,343
Number of Sequences: 14124377
Number of extensions: 68706814
Number of successful extensions: 521459
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 21772
Number of HSP's successfully gapped in prelim test: 8375
Number of HSP's that attempted gapping in prelim test: 403681
Number of HSP's gapped (non-prelim): 80424
length of query: 163
length of database: 4,842,793,630
effective HSP length: 124
effective length of query: 39
effective length of database: 3,091,370,882
effective search space: 120563464398
effective search space used: 120563464398
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.1 bits)
S2: 75 (33.5 bits)