BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780861|ref|YP_003065274.1| NADH dehydrogenase subunit I [Candidatus Liberibacter asiaticus str. psy62] (163 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|222625883|gb|EEE60015.1| hypothetical protein OsJ_12764 [Oryza sativa Japonica Group] Length = 815 Score = 209 bits (531), Expect = 1e-52, Method: Composition-based stats. Identities = 117/161 (72%), Positives = 131/161 (81%), Gaps = 1/161 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 +F +++ LFL E V L L+YFF+ TINYPFEKG SPRFRGEHALRRYP GEER Sbjct: 656 VFERSINTLFLTEMVRGLMLTLKYFFEKNVTINYPFEKGPLSPRFRGEHALRRYPTGEER 715 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEAICPAQAITIE+ R DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGP Sbjct: 716 CIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 774 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 NFEFATET +EL YDKE+LL NGDRWE+EI N+ ++S YR Sbjct: 775 NFEFATETHEELLYDKEKLLENGDRWETEIAANLESESLYR 815 >gi|15219265|ref|NP_178022.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial (TYKY) [Arabidopsis thaliana] gi|297842689|ref|XP_002889226.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial [Arabidopsis lyrata subsp. lyrata] gi|3929364|sp|Q42599|NDUS8_ARATH RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial; AltName: Full=Complex I-23kD; Short=CI-23kD; AltName: Full=Complex I-28.5kD; Short=CI-28.5kD; AltName: Full=NADH-ubiquinone oxidoreductase 23 kDa subunit; Flags: Precursor gi|666977|emb|CAA59061.1| NADH dehydrogenase [Arabidopsis thaliana] gi|3152573|gb|AAC17054.1| Match to NADH:ubiquinone oxidoreductase gb|X84318 from A.thaliana. ESTs gb|Z27005, gb|T04711, gb|T45078 and gb|Z28689 come from this gene [Arabidopsis thaliana] gi|15081697|gb|AAK82503.1| At1g79010/YUP8H12R_21 [Arabidopsis thaliana] gi|18252265|gb|AAL62013.1| At1g79010/YUP8H12R_21 [Arabidopsis thaliana] gi|21593880|gb|AAM65847.1| NADH dehydrogenase, putative [Arabidopsis thaliana] gi|110740838|dbj|BAE98516.1| hypothetical protein [Arabidopsis thaliana] gi|297335067|gb|EFH65485.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial [Arabidopsis lyrata subsp. lyrata] gi|332198072|gb|AEE36193.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8 [Arabidopsis thaliana] Length = 222 Score = 199 bits (505), Expect = 1e-49, Method: Composition-based stats. Identities = 117/161 (72%), Positives = 131/161 (81%), Gaps = 1/161 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 +F +++ LFL E V L L+YFF K TINYPFEKG SPRFRGEHALRRYP GEER Sbjct: 63 VFERSINTLFLTEMVRGLSLTLKYFFDPKVTINYPFEKGPLSPRFRGEHALRRYPTGEER 122 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEA+CPAQAITIE+ R DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGP Sbjct: 123 CIACKLCEAVCPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 181 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 NFEFATET +EL YDKE+LL NGDRWE+EI N+ ++S YR Sbjct: 182 NFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 222 >gi|255536839|ref|XP_002509486.1| NADH-ubiquinone oxidoreductase 1, chain, putative [Ricinus communis] gi|223549385|gb|EEF50873.1| NADH-ubiquinone oxidoreductase 1, chain, putative [Ricinus communis] Length = 222 Score = 198 bits (502), Expect = 3e-49, Method: Composition-based stats. Identities = 119/162 (73%), Positives = 132/162 (81%), Gaps = 1/162 (0%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 IF +++ LFL E V L L+YFF+ K TINYPFEKG SPRFRGEHALRRYP GEE Sbjct: 62 SIFERSINTLFLTEMVRGLSLTLKYFFEKKVTINYPFEKGPLSPRFRGEHALRRYPTGEE 121 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLCEAICPAQAITIE+ R DG+RRT RYDIDM KCIYCG CQEACPVDAIVEG Sbjct: 122 RCIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 180 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 PNFEFATET +EL YDKE+LL NGDRWE+EI N+ ++S YR Sbjct: 181 PNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 222 >gi|77416915|gb|ABA81853.1| NADH:ubiquinone oxidoreductase-like [Solanum tuberosum] Length = 229 Score = 197 bits (501), Expect = 4e-49, Method: Composition-based stats. Identities = 117/162 (72%), Positives = 131/162 (80%), Gaps = 1/162 (0%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 +F +++ LFL E V L L+YFF+ K TINYPFEKG SPRFRGEHALRRY GEE Sbjct: 69 SVFERSINTLFLTEMVRGLMLTLKYFFEKKVTINYPFEKGPLSPRFRGEHALRRYATGEE 128 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLCEAICPAQAITIE+ R DG+RRT RYDIDM KCIYCG CQEACPVDAIVEG Sbjct: 129 RCIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 187 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 PNFEFATET +EL YDKE+LL NGDRWE+EI N+ ++S YR Sbjct: 188 PNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 229 >gi|114707377|ref|ZP_01440274.1| NADH dehydrogenase subunit I [Fulvimarina pelagi HTCC2506] gi|114537258|gb|EAU40385.1| NADH dehydrogenase subunit I [Fulvimarina pelagi HTCC2506] Length = 163 Score = 196 bits (499), Expect = 7e-49, Method: Composition-based stats. Identities = 131/163 (80%), Positives = 139/163 (85%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M V LFL EFV AF L LRYFF K T+NYPFEKG SPRFRGEHALRRYPNG+ Sbjct: 1 MSALAQTVRSLFLIEFVQAFGLALRYFFAPKATVNYPFEKGPVSPRFRGEHALRRYPNGQ 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVE Sbjct: 61 ERCIACKLCEAICPAQAITIEAGPRQNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 120 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEFATETR+ELYYDKE+LL NGDRWE EI RNI D+PYR Sbjct: 121 GPNFEFATETREELYYDKEKLLANGDRWEREIARNIALDAPYR 163 >gi|224105397|ref|XP_002313797.1| predicted protein [Populus trichocarpa] gi|222850205|gb|EEE87752.1| predicted protein [Populus trichocarpa] Length = 222 Score = 196 bits (498), Expect = 9e-49, Method: Composition-based stats. Identities = 117/162 (72%), Positives = 132/162 (81%), Gaps = 1/162 (0%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 +F +++ LFL E V L L+YFF+ K TINYPFEKG SPRFRGEHALRRYP GEE Sbjct: 62 SVFERSINTLFLTEMVRGLSLTLKYFFEPKVTINYPFEKGPLSPRFRGEHALRRYPTGEE 121 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLCEAICPAQAITIE+ R DG+RRT RYDIDM KCIYCG CQEACPVDAIVEG Sbjct: 122 RCIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 180 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 PNFEF+TET +EL YDKE+LL NGDRWE+EI N+ ++S YR Sbjct: 181 PNFEFSTETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 222 >gi|6226880|sp|P80269|NDUS8_SOLTU RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial; AltName: Full=Complex I-23kD; Short=CI-23kD; AltName: Full=Complex I-28.5kD; Short=CI-28.5kD; AltName: Full=NADH-ubiquinone oxidoreductase 23 kDa subunit; Flags: Precursor gi|668985|emb|CAA59062.1| NADH dehydrogenase [Solanum tuberosum] Length = 229 Score = 196 bits (498), Expect = 9e-49, Method: Composition-based stats. Identities = 117/162 (72%), Positives = 131/162 (80%), Gaps = 1/162 (0%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 +F +++ LFL E V L L+YFF+ K TINYPFEKG SPRFRGEHALRRY GEE Sbjct: 69 SVFERSINTLFLTEMVRGLMLTLKYFFEKKVTINYPFEKGPLSPRFRGEHALRRYATGEE 128 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLCEAICPAQAITIE+ R DG+RRT RYDIDM KCIYCG CQEACPVDAIVEG Sbjct: 129 RCIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 187 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 PNFEFATET +EL YDKE+LL NGDRWE+EI N+ ++S YR Sbjct: 188 PNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 229 >gi|668987|emb|CAA59063.1| NADH dehydrogenase [Solanum tuberosum] Length = 229 Score = 196 bits (497), Expect = 1e-48, Method: Composition-based stats. Identities = 116/162 (71%), Positives = 129/162 (79%), Gaps = 1/162 (0%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 +F +++ LFL E V L L+YFF+ K TINYPFEKG SPRFRGEHAL RY GEE Sbjct: 69 SVFERSINTLFLTEMVRGLMLTLKYFFEKKVTINYPFEKGPLSPRFRGEHALHRYATGEE 128 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLCEAICPAQAITIE+ R DG+RRT RYDIDM KCIYCG CQEACPVDAIVEG Sbjct: 129 RCIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 187 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 PNFEFATET +EL YDKE+LL NGDRWE EI N+ ++S YR Sbjct: 188 PNFEFATETHEELLYDKEKLLENGDRWEIEIAENLRSESLYR 229 >gi|322694431|gb|EFY86261.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Metarhizium acridum CQMa 102] Length = 320 Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats. Identities = 103/162 (63%), Positives = 121/162 (74%), Gaps = 1/162 (0%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 + + L E ++ + FF+ TI YPFEKG SPRFRGEHALRRYP+GEE Sbjct: 160 KTLDRLGKYFLLTEMARGMYVLMEQFFRPPYTIYYPFEKGPISPRFRGEHALRRYPSGEE 219 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLCEAICPAQAITIE+ R G+RRT RYDIDM KCIYCG CQE+CPVDAIVE Sbjct: 220 RCIACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQESCPVDAIVES 278 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 PN E+ATETR+EL Y+KE+LL+NGD+WE E+ I D+PYR Sbjct: 279 PNAEYATETREELLYNKEKLLSNGDKWEPELAAAIRADAPYR 320 >gi|3929358|sp|O24143|NDUS8_TOBAC RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial; AltName: Full=Complex I-23kD; Short=CI-23kD; AltName: Full=Complex I-28.5kD; Short=CI-28.5kD; AltName: Full=NADH-ubiquinone oxidoreductase 23 kDa subunit; Flags: Precursor gi|1666177|emb|CAA70326.1| NADH dehydrogenase [Nicotiana tabacum] Length = 230 Score = 195 bits (495), Expect = 2e-48, Method: Composition-based stats. Identities = 116/162 (71%), Positives = 129/162 (79%), Gaps = 1/162 (0%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 +F ++ LFL E V L L+YFF+ K TINYPFEKG SPRFRGE LRRYP GEE Sbjct: 70 SVFEQQINTLFLTEMVRGLMLTLKYFFEKKVTINYPFEKGPLSPRFRGEQPLRRYPTGEE 129 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLCEAICPAQAITIE+ R DG+RRT RYDIDM KCIYCG CQEACPVDAIVEG Sbjct: 130 RCIACKLCEAICPAQAITIEAEAR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 188 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 PNFEFATET +EL YDKE+LL NGDRWE+EI N+ ++S YR Sbjct: 189 PNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 230 >gi|224077832|ref|XP_002305427.1| predicted protein [Populus trichocarpa] gi|222848391|gb|EEE85938.1| predicted protein [Populus trichocarpa] Length = 222 Score = 195 bits (495), Expect = 2e-48, Method: Composition-based stats. Identities = 114/162 (70%), Positives = 129/162 (79%), Gaps = 1/162 (0%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 +F +++ LFL E V L L+YFF+ K TINYPFEKG S FRGEHALRRY GEE Sbjct: 62 SVFERSINTLFLTEMVRGLSLTLKYFFEKKVTINYPFEKGPLSSHFRGEHALRRYHTGEE 121 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLCEAICPAQAITIE+ R DG+RRT RYDIDM KCIYCG CQEACPVDAIVEG Sbjct: 122 RCIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 180 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 PNFEF TET +EL YDKE+LL+NGDRWE+EI N+ ++S YR Sbjct: 181 PNFEFTTETHEELLYDKEKLLDNGDRWETEIAENLRSESLYR 222 >gi|15219311|ref|NP_173114.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial, putative [Arabidopsis thaliana] gi|297844602|ref|XP_002890182.1| ATMLO14 [Arabidopsis lyrata subsp. lyrata] gi|9989050|gb|AAG10813.1|AC011808_1 Putative NADH-ubiquinone oxidoreductase [Arabidopsis thaliana] gi|16649105|gb|AAL24404.1| Putative NADH-ubiquinone oxidoreductase [Arabidopsis thaliana] gi|20148605|gb|AAM10193.1| putative NADH-ubiquinone oxidoreductase [Arabidopsis thaliana] gi|21553581|gb|AAM62674.1| NADH:ubiquinone oxidoreductase, putative [Arabidopsis thaliana] gi|297336024|gb|EFH66441.1| ATMLO14 [Arabidopsis lyrata subsp. lyrata] gi|332191363|gb|AEE29484.1| Alpha-helical ferredoxin [Arabidopsis thaliana] Length = 222 Score = 194 bits (494), Expect = 3e-48, Method: Composition-based stats. Identities = 117/161 (72%), Positives = 131/161 (81%), Gaps = 1/161 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 +F +++ LFL E V L L+YFF K TINYPFEKG SPRFRGEHALRRYP GEER Sbjct: 63 VFERSMNTLFLTEMVRGLSLTLKYFFDPKVTINYPFEKGPLSPRFRGEHALRRYPTGEER 122 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEA+CPAQAITIE+ R DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGP Sbjct: 123 CIACKLCEAVCPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 181 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 NFEFATET +EL YDKE+LL NGDRWE+EI N+ ++S YR Sbjct: 182 NFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 222 >gi|217075100|gb|ACJ85910.1| unknown [Medicago truncatula] Length = 222 Score = 194 bits (492), Expect = 4e-48, Method: Composition-based stats. Identities = 116/161 (72%), Positives = 130/161 (80%), Gaps = 1/161 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 +F +++ LFL E V L L+YFF TINYPFEKG SPRFRGEHALRRYP GEER Sbjct: 63 VFERSINTLFLTELVRGLMLTLKYFFDKNVTINYPFEKGPLSPRFRGEHALRRYPTGEER 122 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEAICPAQAITIE+ R DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGP Sbjct: 123 CIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 181 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 NFEF+TET +EL YDKE+LL NGDRWE+EI N+ ++S YR Sbjct: 182 NFEFSTETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 222 >gi|255626927|gb|ACU13808.1| unknown [Glycine max] Length = 222 Score = 194 bits (492), Expect = 5e-48, Method: Composition-based stats. Identities = 118/162 (72%), Positives = 131/162 (80%), Gaps = 1/162 (0%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 +F +++ LFL E V L L+YFF+ K TINYPFEKG SPRFRGEHALRRYP GEE Sbjct: 62 SVFERSINTLFLTEMVRGLMLTLKYFFETKVTINYPFEKGPLSPRFRGEHALRRYPTGEE 121 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLCEAICPAQAITIE+ R DG+RRT RYDIDM KCIYCG CQEACPVDAIVEG Sbjct: 122 RCIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 180 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 PNFEFATET EL YDKE+LL NGDRWE+EI N+ ++S YR Sbjct: 181 PNFEFATETHDELLYDKEKLLENGDRWETEIAENLRSESLYR 222 >gi|15888607|ref|NP_354288.1| NADH dehydrogenase subunit I [Agrobacterium tumefaciens str. C58] gi|81764054|sp|Q8UFW9|NUOI_AGRT5 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|15156329|gb|AAK87073.1| NADH ubiquinone oxidoreductase chain I [Agrobacterium tumefaciens str. C58] Length = 163 Score = 193 bits (490), Expect = 8e-48, Method: Composition-based stats. Identities = 132/163 (80%), Positives = 144/163 (88%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M V+ LFLKEFVGA FL +R+FFK K TINYPFEKG SPRFRGEHALRRYPNGE Sbjct: 1 MASLSQAVNSLFLKEFVGAIFLTMRHFFKQKATINYPFEKGPVSPRFRGEHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVE Sbjct: 61 ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 120 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEFATETR+ELY+DK+RLL+NGDRWE EI RN+ D+PYR Sbjct: 121 GPNFEFATETREELYFDKQRLLDNGDRWEREIARNLALDAPYR 163 >gi|325292642|ref|YP_004278506.1| NADH dehydrogenase I chain I [Agrobacterium sp. H13-3] gi|325060495|gb|ADY64186.1| NADH dehydrogenase I chain I [Agrobacterium sp. H13-3] Length = 163 Score = 193 bits (489), Expect = 9e-48, Method: Composition-based stats. Identities = 131/163 (80%), Positives = 144/163 (88%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M V+ LFLKEFVGA FL +R+FFK K T+NYPFEKG SPRFRGEHALRRYPNGE Sbjct: 1 MASLSQAVNSLFLKEFVGAIFLTMRHFFKQKATVNYPFEKGPVSPRFRGEHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVE Sbjct: 61 ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 120 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEFATETR+ELY+DK+RLL+NGDRWE EI RN+ D+PYR Sbjct: 121 GPNFEFATETREELYFDKQRLLDNGDRWEREIARNLALDAPYR 163 >gi|255629169|gb|ACU14929.1| unknown [Glycine max] Length = 222 Score = 193 bits (489), Expect = 9e-48, Method: Composition-based stats. Identities = 117/162 (72%), Positives = 131/162 (80%), Gaps = 1/162 (0%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 +F +++ LFL E V L L+YFF+ K TINYPFEKG SPRFRGEHALRRYP GEE Sbjct: 62 SVFERSINTLFLTEMVRGLMLTLKYFFETKVTINYPFEKGPLSPRFRGEHALRRYPTGEE 121 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLCEAICPAQAITIE+ R DG+RRT RYDIDM KCIYCG CQEACP DAIVEG Sbjct: 122 RCIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPGDAIVEG 180 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 PNFEFATET +EL YDKE+LL NGDRWE+EI N+ ++S YR Sbjct: 181 PNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 222 >gi|227821627|ref|YP_002825597.1| NADH dehydrogenase subunit I [Sinorhizobium fredii NGR234] gi|227340626|gb|ACP24844.1| NADH dehydrogenase, chain I [Sinorhizobium fredii NGR234] Length = 163 Score = 193 bits (489), Expect = 1e-47, Method: Composition-based stats. Identities = 136/163 (83%), Positives = 144/163 (88%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M VS LFLKEFVGAFFL +RYFF+ K T+NYPFEKG SPRFRGEHALRRYPNGE Sbjct: 1 MAGLSQAVSSLFLKEFVGAFFLSMRYFFRPKATLNYPFEKGPVSPRFRGEHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVE Sbjct: 61 ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 120 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEFATETR+ELYYDKE+LL NGDRWE EI RNI DSPYR Sbjct: 121 GPNFEFATETREELYYDKEKLLANGDRWEREIARNIAMDSPYR 163 >gi|307301099|ref|ZP_07580868.1| NADH-quinone oxidoreductase, chain I [Sinorhizobium meliloti BL225C] gi|307317833|ref|ZP_07597271.1| NADH-quinone oxidoreductase, chain I [Sinorhizobium meliloti AK83] gi|306896595|gb|EFN27343.1| NADH-quinone oxidoreductase, chain I [Sinorhizobium meliloti AK83] gi|306904054|gb|EFN34640.1| NADH-quinone oxidoreductase, chain I [Sinorhizobium meliloti BL225C] Length = 163 Score = 192 bits (488), Expect = 1e-47, Method: Composition-based stats. Identities = 134/163 (82%), Positives = 143/163 (87%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M VS LFLKEFVGAF L +RYFF+ K T+NYPFEKG SPRFRGEHALRRYPNGE Sbjct: 1 MAGLSNAVSSLFLKEFVGAFLLSMRYFFRPKATLNYPFEKGPVSPRFRGEHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVE Sbjct: 61 ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 120 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEF+TETR+ELYYDKE+LL NGDRWE EI RNI DSPYR Sbjct: 121 GPNFEFSTETREELYYDKEKLLANGDRWEREIARNIAMDSPYR 163 >gi|15965027|ref|NP_385380.1| NADH dehydrogenase subunit I [Sinorhizobium meliloti 1021] gi|81634769|sp|Q92QP4|NUOI1_RHIME RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName: Full=NADH dehydrogenase I subunit I 1; AltName: Full=NDH-1 subunit I 1 gi|15074206|emb|CAC45853.1| Probable NADH-ubiquinone oxidoreductase chain I [Sinorhizobium meliloti 1021] Length = 164 Score = 192 bits (487), Expect = 2e-47, Method: Composition-based stats. Identities = 134/163 (82%), Positives = 143/163 (87%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M VS LFLKEFVGAF L +RYFF+ K T+NYPFEKG SPRFRGEHALRRYPNGE Sbjct: 2 MAGLSNAVSSLFLKEFVGAFLLSMRYFFRPKATLNYPFEKGPVSPRFRGEHALRRYPNGE 61 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVE Sbjct: 62 ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 121 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEF+TETR+ELYYDKE+LL NGDRWE EI RNI DSPYR Sbjct: 122 GPNFEFSTETREELYYDKEKLLANGDRWEREIARNIAMDSPYR 164 >gi|150396121|ref|YP_001326588.1| NADH dehydrogenase subunit I [Sinorhizobium medicae WSM419] gi|150027636|gb|ABR59753.1| NADH-quinone oxidoreductase, chain I [Sinorhizobium medicae WSM419] Length = 163 Score = 191 bits (486), Expect = 2e-47, Method: Composition-based stats. Identities = 133/163 (81%), Positives = 143/163 (87%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M VS LFLKEFVGAF L +RYFF+ K T+NYP+EKG SPRFRGEHALRRYPNGE Sbjct: 1 MAGLSNAVSSLFLKEFVGAFLLSMRYFFRPKATLNYPYEKGPISPRFRGEHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVE Sbjct: 61 ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 120 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEF+TETR+ELYYDKE+LL NGDRWE EI RNI DSPYR Sbjct: 121 GPNFEFSTETREELYYDKEKLLANGDRWEREIARNIAMDSPYR 163 >gi|169861584|ref|XP_001837426.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Coprinopsis cinerea okayama7#130] gi|116501447|gb|EAU84342.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Coprinopsis cinerea okayama7#130] Length = 245 Score = 191 bits (486), Expect = 2e-47, Method: Composition-based stats. Identities = 103/160 (64%), Positives = 117/160 (73%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 V F E + ++ L FF+ TI YPFEKG SPRFRGEHALRRYP+GEERC Sbjct: 87 LDKAVHIFFFTEIIRGMWVVLEQFFRPPYTIMYPFEKGPLSPRFRGEHALRRYPSGEERC 146 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAITIES R G+R+T +YDIDM KCIYCG C EACPVDAIVE N Sbjct: 147 IACKLCEAICPAQAITIESEARQD-GSRKTTKYDIDMTKCIYCGFCAEACPVDAIVETQN 205 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 EF+TETR+EL Y+KE+LL NGDR E+EI N+ D YR Sbjct: 206 QEFSTETREELLYNKEKLLANGDRAEAEIAANLHADHLYR 245 >gi|224050711|ref|XP_002196899.1| PREDICTED: similar to NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial [Taeniopygia guttata] Length = 235 Score = 191 bits (485), Expect = 3e-47, Method: Composition-based stats. Identities = 113/164 (68%), Positives = 125/164 (76%), Gaps = 2/164 (1%) Query: 1 MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59 MR I L E V + L Y F+ TINYPFEKG SPRFRGEHALRRYP+G Sbjct: 73 MRSITDRAAQTLLWTELVRGLAMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 132 Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 EERCIACKLCEA+CPAQAITIE+ PR G+RRT RYDIDM KCIYCG CQEACPVDAIV Sbjct: 133 EERCIACKLCEAVCPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 191 Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 EGPNFEF+TET +EL Y+KE+LLNNGD+WE+EI NI D YR Sbjct: 192 EGPNFEFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADYLYR 235 >gi|299470484|emb|CBN78476.1| NUOI homolog, NADH dehydrogenase (ubiquinone) subunit [Ectocarpus siliculosus] Length = 236 Score = 191 bits (485), Expect = 3e-47, Method: Composition-based stats. Identities = 111/161 (68%), Positives = 125/161 (77%), Gaps = 1/161 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 + +F+ E A +L FFK K TINYPFEKG SPRFRGEHALRRYP+GEER Sbjct: 77 TIDRLSNIMFMAEIFRALWLSAEVFFKPKVTINYPFEKGPLSPRFRGEHALRRYPSGEER 136 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI+CKLCEAICPAQAITIE+ R DG+R+T RYDIDM KCIYCG CQEACPVDAIVEGP Sbjct: 137 CISCKLCEAICPAQAITIEAEQR-EDGSRKTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 195 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 N+EFATET +EL YDKE+LL NGDRWE I +N+ D PYR Sbjct: 196 NYEFATETHEELLYDKEKLLANGDRWEVAIAQNLAADHPYR 236 >gi|209737012|gb|ACI69375.1| NADH dehydrogenase iron-sulfur protein 8, mitochondrial precursor [Salmo salar] Length = 210 Score = 191 bits (484), Expect = 3e-47, Method: Composition-based stats. Identities = 111/164 (67%), Positives = 124/164 (75%), Gaps = 2/164 (1%) Query: 1 MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59 M+ I L E + + Y F+ TINYPFEKG SPRFRGEHALRRYP+G Sbjct: 48 MKSITDRAAQTLLWTELFRGLGMTMSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 107 Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 EERCIACKLCEAICPAQAITIE+ PR G+RRT RYDIDM KCIYCG CQEACPVDAIV Sbjct: 108 EERCIACKLCEAICPAQAITIEAEPRSD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 166 Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 EGPNFEF+TET +EL Y+KE+LLNNGD+WE+EI NI D YR Sbjct: 167 EGPNFEFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADYLYR 210 >gi|225706152|gb|ACO08922.1| NADH dehydrogenase iron-sulfur protein 8, mitochondrial precursor [Osmerus mordax] Length = 210 Score = 191 bits (484), Expect = 4e-47, Method: Composition-based stats. Identities = 111/164 (67%), Positives = 124/164 (75%), Gaps = 2/164 (1%) Query: 1 MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59 M+ I L E + + Y F+ TINYPFEKG SPRFRGEHALRRYP+G Sbjct: 48 MKSITDRAAQTLLWTELFRGLGMTMSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 107 Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 EERCIACKLCEAICPAQAITIE+ PR G+RRT RYDIDM KCIYCG CQEACPVDAIV Sbjct: 108 EERCIACKLCEAICPAQAITIEAEPRSD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 166 Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 EGPNFEF+TET +EL Y+KE+LLNNGD+WE+EI NI D YR Sbjct: 167 EGPNFEFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADYLYR 210 >gi|255084007|ref|XP_002508578.1| NADH dehydrogenase [Micromonas sp. RCC299] gi|226523855|gb|ACO69836.1| NADH dehydrogenase [Micromonas sp. RCC299] Length = 228 Score = 191 bits (484), Expect = 4e-47, Method: Composition-based stats. Identities = 111/161 (68%), Positives = 127/161 (78%), Gaps = 1/161 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 + + LFL E L ++YF++ K TINYPFEKG SPRFRGEHALRRYP GEER Sbjct: 69 VLDASAQTLFLTEMFRGMSLAMKYFWEPKVTINYPFEKGPLSPRFRGEHALRRYPTGEER 128 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEAICPAQAITIE+ R DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGP Sbjct: 129 CIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 187 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 NFE+AT T +EL YDKE+LL NGD+WE EI +N+ ++S YR Sbjct: 188 NFEYATYTHEELLYDKEKLLANGDKWELEIQKNLASESLYR 228 >gi|225428485|ref|XP_002284290.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|297741457|emb|CBI32588.3| unnamed protein product [Vitis vinifera] Length = 223 Score = 190 bits (483), Expect = 5e-47, Method: Composition-based stats. Identities = 116/162 (71%), Positives = 129/162 (79%), Gaps = 1/162 (0%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 +F +++ LFL E V L L+YFF + TINYPFEKG SPRFRGEHALRRYP GEE Sbjct: 63 SVFNHSINTLFLTEMVRGLMLTLKYFFDTQVTINYPFEKGPLSPRFRGEHALRRYPTGEE 122 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLCEAICPAQAITIE+ R DG+RRT RYDIDM KCIYCG CQEACPVDAIVEG Sbjct: 123 RCIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 181 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 PNFEF TET +EL YDKE+LL NGDRWE+EI N+ +S YR Sbjct: 182 PNFEFTTETHEELLYDKEKLLENGDRWETEIAENLRAESLYR 223 >gi|90417835|ref|ZP_01225747.1| NADH dehydrogenase I, I subunit [Aurantimonas manganoxydans SI85-9A1] gi|90337507|gb|EAS51158.1| NADH dehydrogenase I, I subunit [Aurantimonas manganoxydans SI85-9A1] Length = 163 Score = 189 bits (481), Expect = 7e-47, Method: Composition-based stats. Identities = 125/163 (76%), Positives = 138/163 (84%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M V LFL EFV A L +RYFF K T+NYPFEK SPRFRGEHALRRYPNG+ Sbjct: 1 MSAIAQTVRSLFLVEFVKAMGLSMRYFFAPKATVNYPFEKNPQSPRFRGEHALRRYPNGQ 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYD+DM+KCIYCG CQEACPVDAIVE Sbjct: 61 ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDLDMVKCIYCGFCQEACPVDAIVE 120 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEF+TETR+ELYYDK++LL+NGDRWE EI RNI D+PYR Sbjct: 121 GPNFEFSTETREELYYDKQKLLDNGDRWEREIARNIALDAPYR 163 >gi|13471398|ref|NP_102964.1| NADH dehydrogenase subunit I [Mesorhizobium loti MAFF303099] gi|75543506|sp|Q98KR4|NUOI_RHILO RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|14022140|dbj|BAB48750.1| NADH-ubiquinone dehydrogenase chain 9 [Mesorhizobium loti MAFF303099] Length = 164 Score = 189 bits (481), Expect = 8e-47, Method: Composition-based stats. Identities = 126/163 (77%), Positives = 137/163 (84%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M L L++FV AFFL +R FF K TINYP EKG SPRFRGEHALRRYPNGE Sbjct: 2 MSALSQAAKSLLLQDFVSAFFLSMRQFFAPKETINYPHEKGPVSPRFRGEHALRRYPNGE 61 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVE Sbjct: 62 ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 121 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEFATETR+ELYYDK++LL NGDRWE E+ RNI D+PYR Sbjct: 122 GPNFEFATETREELYYDKDKLLANGDRWERELARNISLDAPYR 164 >gi|289743757|gb|ADD20626.1| NADH-ubiquinone oxidoreductase NDUFS8/23 kDa subunit [Glossina morsitans morsitans] Length = 215 Score = 189 bits (481), Expect = 8e-47, Method: Composition-based stats. Identities = 112/159 (70%), Positives = 124/159 (77%), Gaps = 1/159 (0%) Query: 5 RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64 S +FL E F + L + FK TINYPFEKG SPRFRGEHALRRYP+GEERCI Sbjct: 58 DRAASTIFLSELARGFAVTLAHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEERCI 117 Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 ACKLCEAICPAQAITIE+ R G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNF Sbjct: 118 ACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNF 176 Query: 125 EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 EF+TET +EL Y+KE+LLNNGD+WESEI N+ D YR Sbjct: 177 EFSTETHEELLYNKEKLLNNGDKWESEIASNLQADHLYR 215 >gi|296116527|ref|ZP_06835137.1| NADH dehydrogenase subunit I [Gluconacetobacter hansenii ATCC 23769] gi|295976739|gb|EFG83507.1| NADH dehydrogenase subunit I [Gluconacetobacter hansenii ATCC 23769] Length = 162 Score = 189 bits (481), Expect = 8e-47, Method: Composition-based stats. Identities = 110/163 (67%), Positives = 126/163 (77%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M L E V + L+ FFK K T+NYP+EKG SPRFRGEHALRRYPNGE Sbjct: 1 MGYLSRTARSFLLTELVSGMSVTLKAFFKPKVTLNYPYEKGPLSPRFRGEHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA CPA+AITIE+ PR G+RRT RYDIDM KCIYCGLC+EACPVDAIVE Sbjct: 61 ERCIACKLCEATCPAEAITIEAEPRDD-GSRRTTRYDIDMTKCIYCGLCEEACPVDAIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPN+EFATETR+EL Y+K++LL NGDRWES + R + D+PYR Sbjct: 120 GPNYEFATETREELMYNKDKLLANGDRWESVLARRLELDAPYR 162 >gi|323508175|emb|CBQ68046.1| probable NADH-ubiquinone oxidoreductase 23 kDa subunit precursor [Sporisorium reilianum] Length = 265 Score = 189 bits (481), Expect = 9e-47, Method: Composition-based stats. Identities = 106/160 (66%), Positives = 116/160 (72%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 F E + ++ L FF+ TI YPFEKG SPRFRGEHALRRYP GEERC Sbjct: 107 LDKAGQLFFFTEILRGMWIVLENFFRPPYTIMYPFEKGPLSPRFRGEHALRRYPTGEERC 166 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAITIES PR DG RRT RYDIDM KCIYCG CQEACPVDAIVE N Sbjct: 167 IACKLCEAICPAQAITIESEPR-EDGARRTTRYDIDMTKCIYCGFCQEACPVDAIVETQN 225 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E++TETR+EL Y+KE+LL NGDR E+EI NI D R Sbjct: 226 TEYSTETREELLYNKEKLLANGDRAEAEIAANIWADHLQR 265 >gi|118590029|ref|ZP_01547433.1| NADH dehydrogenase subunit I [Stappia aggregata IAM 12614] gi|118437526|gb|EAV44163.1| NADH dehydrogenase subunit I [Stappia aggregata IAM 12614] Length = 162 Score = 189 bits (480), Expect = 9e-47, Method: Composition-based stats. Identities = 130/160 (81%), Positives = 139/160 (86%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 V LFL+EFV AF L +RYFFK K T+NYPFEKG SPRFRGEHALRRYPNGEERC Sbjct: 3 LSQAVKSLFLQEFVSAFVLAMRYFFKPKPTVNYPFEKGPVSPRFRGEHALRRYPNGEERC 62 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAITIE+GPR +DGTRRT RYDIDM+KCIYCG CQEACPVDAIVEGPN Sbjct: 63 IACKLCEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGFCQEACPVDAIVEGPN 122 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FEFATETR+ELYYDKE+LL NGDRWE EI RNI D+PYR Sbjct: 123 FEFATETREELYYDKEKLLANGDRWEREIARNIEMDAPYR 162 >gi|303289747|ref|XP_003064161.1| predicted protein [Micromonas pusilla CCMP1545] gi|226454477|gb|EEH51783.1| predicted protein [Micromonas pusilla CCMP1545] Length = 231 Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats. Identities = 111/161 (68%), Positives = 128/161 (79%), Gaps = 1/161 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 + + LFL E L ++YF++ K TINYPFEKG SPRFRGEHALRRYP GEER Sbjct: 72 VIDASAQTLFLTEMFRGMSLAMKYFWEPKVTINYPFEKGPLSPRFRGEHALRRYPTGEER 131 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEAICPAQAITIE+ R DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGP Sbjct: 132 CIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 190 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 NFE+AT T +EL YDKE+LL+NGD+WE EI +N+ ++S YR Sbjct: 191 NFEYATYTHEELMYDKEKLLDNGDKWEKEIAKNLASESLYR 231 >gi|158423300|ref|YP_001524592.1| NADH dehydrogenase subunit I [Azorhizobium caulinodans ORS 571] gi|172047937|sp|A8I407|NUOI_AZOC5 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|158330189|dbj|BAF87674.1| NADH-quinone oxidoreductase chain I protein [Azorhizobium caulinodans ORS 571] Length = 162 Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats. Identities = 128/163 (78%), Positives = 136/163 (83%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M+ LFL E V FFL +RYFFK K TINYPFEK SPRFRGEHALRRYPNGE Sbjct: 1 MK-LDQAARALFLTELVSGFFLAMRYFFKPKATINYPFEKNPISPRFRGEHALRRYPNGE 59 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE+GPR +DGTRRT RYDIDM+KCIYCG CQEACPVDAIVE Sbjct: 60 ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGFCQEACPVDAIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEFATETR+ELYYDKE+LL NGDRWE EI R I D+PYR Sbjct: 120 GPNFEFATETREELYYDKEKLLANGDRWEREIARAIAADAPYR 162 >gi|86357247|ref|YP_469139.1| NADH dehydrogenase subunit I [Rhizobium etli CFN 42] gi|190891295|ref|YP_001977837.1| NADH-ubiquinone oxidoreductase, chain I [Rhizobium etli CIAT 652] gi|218462497|ref|ZP_03502588.1| NADH dehydrogenase subunit I [Rhizobium etli Kim 5] gi|218509388|ref|ZP_03507266.1| NADH dehydrogenase subunit I [Rhizobium etli Brasil 5] gi|115502507|sp|Q2K9S4|NUOI1_RHIEC RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName: Full=NADH dehydrogenase I subunit I 1; AltName: Full=NDH-1 subunit I 1 gi|86281349|gb|ABC90412.1| NADH-ubiquinone oxidoreductase chain I protein [Rhizobium etli CFN 42] gi|190696574|gb|ACE90659.1| NADH-ubiquinone oxidoreductase protein, chain I [Rhizobium etli CIAT 652] gi|327188496|gb|EGE55710.1| NADH dehydrogenase subunit I [Rhizobium etli CNPAF512] Length = 163 Score = 189 bits (480), Expect = 1e-46, Method: Composition-based stats. Identities = 133/163 (81%), Positives = 144/163 (88%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M +++ LFLKEF GAFFL +RYFF+ K TINYPFEKG SPRFRGEHALRRYPNGE Sbjct: 1 MASLSSSINSLFLKEFFGAFFLSMRYFFRQKATINYPFEKGPVSPRFRGEHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVE Sbjct: 61 ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 120 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEFATETR+ELY+DK RLL+NGDRWE EI RNI DSPYR Sbjct: 121 GPNFEFATETREELYFDKARLLDNGDRWEREIARNIAIDSPYR 163 >gi|89276311|gb|ABD66512.1| mitochondrial NADH:ubiquinone oxidoreductase complex I [Gymnadenia conopsea] Length = 226 Score = 189 bits (479), Expect = 1e-46, Method: Composition-based stats. Identities = 117/162 (72%), Positives = 132/162 (81%), Gaps = 1/162 (0%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 +F +++ LFL E V L L+YFF+ K TINYPFEKG SPRFRGEHALRRYP+GEE Sbjct: 66 SVFERSMNTLFLTELVRGLMLTLKYFFEPKVTINYPFEKGPLSPRFRGEHALRRYPSGEE 125 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLCEAICPAQAITIE+ R DG+RRT RYDIDM KCIYCG CQEACPVDAIVEG Sbjct: 126 RCIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 184 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 PNFEF TET +EL YDKE+LL NGDRWE+EI N+ ++S YR Sbjct: 185 PNFEFTTETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 226 >gi|116251475|ref|YP_767313.1| NADH dehydrogenase subunit I [Rhizobium leguminosarum bv. viciae 3841] gi|241204096|ref|YP_002975192.1| NADH dehydrogenase subunit I [Rhizobium leguminosarum bv. trifolii WSM1325] gi|115502540|sp|Q1MIK6|NUOI_RHIL3 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|115256123|emb|CAK07204.1| putative NADH-quinone oxidoreductase subunit I [Rhizobium leguminosarum bv. viciae 3841] gi|240857986|gb|ACS55653.1| NADH-quinone oxidoreductase, chain I [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 163 Score = 189 bits (479), Expect = 1e-46, Method: Composition-based stats. Identities = 135/163 (82%), Positives = 145/163 (88%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M ++S LFLKEFVGAFFL +RYFF+ K TINYPFEKG SPRFRGEHALRRYPNGE Sbjct: 1 MASLSGSISSLFLKEFVGAFFLSMRYFFRQKATINYPFEKGPVSPRFRGEHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVE Sbjct: 61 ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 120 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEFATETR+ELY+DK RLL+NGDRWE EI RNI DSPYR Sbjct: 121 GPNFEFATETREELYFDKARLLDNGDRWEREIARNIAIDSPYR 163 >gi|320591509|gb|EFX03948.1| NADH-quinone oxidoreductase [Grosmannia clavigera kw1407] Length = 243 Score = 189 bits (479), Expect = 1e-46, Method: Composition-based stats. Identities = 106/161 (65%), Positives = 122/161 (75%), Gaps = 1/161 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 F + L E + ++ L FF+ TI YPFEKG SPRFRGEHALRRYP+GEER Sbjct: 84 TFDKIGKYFMLLEMLRGMYVLLEQFFRPPYTIYYPFEKGPISPRFRGEHALRRYPSGEER 143 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEAICPAQAITIE+ R G+RRT RYDIDM KCIYCG CQE+CPVDAIVE P Sbjct: 144 CIACKLCEAICPAQAITIEAEERAD-GSRRTSRYDIDMTKCIYCGFCQESCPVDAIVESP 202 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 N E+ATETR+EL Y+KE+LL+NGD+WE E+ I DSPYR Sbjct: 203 NAEYATETREELLYNKEKLLSNGDKWEPELAAAIRADSPYR 243 >gi|154253657|ref|YP_001414481.1| NADH dehydrogenase subunit I [Parvibaculum lavamentivorans DS-1] gi|171769682|sp|A7HY41|NUOI_PARL1 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|154157607|gb|ABS64824.1| NADH-quinone oxidoreductase, chain I [Parvibaculum lavamentivorans DS-1] Length = 163 Score = 189 bits (479), Expect = 1e-46, Method: Composition-based stats. Identities = 127/163 (77%), Positives = 136/163 (83%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + LFL EFV +F L +RYFFK K T+NYPFEKG SPRFRGEHALRRYPNGE Sbjct: 1 MAWLDQSARSLFLAEFVSSFLLAMRYFFKPKVTLNYPFEKGPLSPRFRGEHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPA AITIE+GPR +DGTRRT RYDIDM KCIYCGLCQEACPVDAIVE Sbjct: 61 ERCIACKLCEAICPALAITIEAGPRRNDGTRRTTRYDIDMTKCIYCGLCQEACPVDAIVE 120 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEFATETR+EL YDK RLL NGDRWE EI +NI D+PYR Sbjct: 121 GPNFEFATETREELMYDKNRLLANGDRWEREIAKNIALDAPYR 163 >gi|222148283|ref|YP_002549240.1| NADH dehydrogenase subunit I [Agrobacterium vitis S4] gi|254767831|sp|B9JVF4|NUOI_AGRVS RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|221735271|gb|ACM36234.1| NADH ubiquinone oxidoreductase chain I [Agrobacterium vitis S4] Length = 163 Score = 189 bits (479), Expect = 1e-46, Method: Composition-based stats. Identities = 129/163 (79%), Positives = 141/163 (86%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M V LFLKEFV AFFL +RYFFK K T+NYPFEKG SPRFRGEHALRRYPNGE Sbjct: 1 MASVSQAVRSLFLKEFVNAFFLSMRYFFKQKATVNYPFEKGPVSPRFRGEHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVE Sbjct: 61 ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 120 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEF+TE+R+ELY+DK +LL NGDRWE EI RN+ D+PYR Sbjct: 121 GPNFEFSTESREELYFDKAKLLANGDRWEREIARNLAQDAPYR 163 >gi|319782990|ref|YP_004142466.1| NADH-quinone oxidoreductase, chain I [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168878|gb|ADV12416.1| NADH-quinone oxidoreductase, chain I [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 163 Score = 189 bits (479), Expect = 1e-46, Method: Composition-based stats. Identities = 129/163 (79%), Positives = 138/163 (84%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M L L++FV AFFL +R FF K TINYP EKG TSPRFRGEHALRRYPNGE Sbjct: 1 MSALSQAAKSLLLQDFVSAFFLSMRQFFAPKETINYPHEKGPTSPRFRGEHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVE Sbjct: 61 ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 120 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEFATETR+ELYYDK+RLL NGDRWE E+ RNI DSPYR Sbjct: 121 GPNFEFATETREELYYDKDRLLANGDRWERELARNISLDSPYR 163 >gi|239831694|ref|ZP_04680023.1| NADH-quinone oxidoreductase, chain I [Ochrobactrum intermedium LMG 3301] gi|239823961|gb|EEQ95529.1| NADH-quinone oxidoreductase, chain I [Ochrobactrum intermedium LMG 3301] Length = 163 Score = 189 bits (479), Expect = 1e-46, Method: Composition-based stats. Identities = 131/163 (80%), Positives = 139/163 (85%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M F L LKEFVGAFFL +R FF K T+NYP EKG SPRFRGEHALRRYPNGE Sbjct: 1 MASFAQAAKSLLLKEFVGAFFLSMRQFFAPKATLNYPHEKGPVSPRFRGEHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVE Sbjct: 61 ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 120 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEFATETR+ELYYDKE+LL NGDRWE EI RNI D+PYR Sbjct: 121 GPNFEFATETREELYYDKEKLLANGDRWEREIARNIAMDAPYR 163 >gi|194218557|ref|XP_001498476.2| PREDICTED: similar to NADH dehydrogenase (ubiquinone) [Equus caballus] Length = 210 Score = 189 bits (479), Expect = 1e-46, Method: Composition-based stats. Identities = 110/164 (67%), Positives = 125/164 (76%), Gaps = 2/164 (1%) Query: 1 MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59 M+ + L E + + L Y F+ TINYPFEKG SPRFRGEHALRRYP+G Sbjct: 48 MKSVTDRAAQTLLWTELIRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 107 Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 EERCIACKLCEA+CPAQAITIE+ PR G+RRT RYDIDM KCIYCG CQEACPVDAIV Sbjct: 108 EERCIACKLCEAVCPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 166 Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 EGPNFEF+TET +EL Y+KE+LLNNGD+WE+EI NI D YR Sbjct: 167 EGPNFEFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADYLYR 210 >gi|226499536|ref|NP_001148902.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Zea mays] gi|195623106|gb|ACG33383.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Zea mays] Length = 223 Score = 189 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 116/161 (72%), Positives = 130/161 (80%), Gaps = 1/161 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 +F +++ LFL E V L L+YFF TINYPFEKG SPRFRGEHALRRY +GEER Sbjct: 64 VFERSINTLFLTEMVRGLMLTLKYFFDRNVTINYPFEKGPLSPRFRGEHALRRYESGEER 123 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEAICPAQAITIE+ R DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGP Sbjct: 124 CIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 182 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 NFEFATET +EL YDKE+LL NGDRWE+EI N+ ++S YR Sbjct: 183 NFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 223 >gi|153009743|ref|YP_001370958.1| NADH dehydrogenase subunit I [Ochrobactrum anthropi ATCC 49188] gi|166918794|sp|A6X1M5|NUOI_OCHA4 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|151561631|gb|ABS15129.1| NADH-quinone oxidoreductase, chain I [Ochrobactrum anthropi ATCC 49188] Length = 163 Score = 189 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 130/163 (79%), Positives = 139/163 (85%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M F L LKEFVGAFFL +R FF K T+NYP EKG SPRFRGEHALRRYPNGE Sbjct: 1 MASFAQAAKSLLLKEFVGAFFLSMRQFFAPKATLNYPHEKGPVSPRFRGEHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVE Sbjct: 61 ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 120 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEFATETR+ELYYDK++LL NGDRWE EI RNI D+PYR Sbjct: 121 GPNFEFATETREELYYDKDKLLANGDRWEREIARNIAMDAPYR 163 >gi|115455639|ref|NP_001051420.1| Os03g0774200 [Oryza sativa Japonica Group] gi|31745233|gb|AAP68893.1| putative NADH dehydrogenase [Oryza sativa Japonica Group] gi|108711316|gb|ABF99111.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial precursor, putative, expressed [Oryza sativa Japonica Group] gi|113549891|dbj|BAF13334.1| Os03g0774200 [Oryza sativa Japonica Group] gi|215686857|dbj|BAG89707.1| unnamed protein product [Oryza sativa Japonica Group] gi|215767445|dbj|BAG99673.1| unnamed protein product [Oryza sativa Japonica Group] Length = 223 Score = 189 bits (479), Expect = 2e-46, Method: Composition-based stats. Identities = 117/161 (72%), Positives = 131/161 (81%), Gaps = 1/161 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 +F +++ LFL E V L L+YFF+ TINYPFEKG SPRFRGEHALRRYP GEER Sbjct: 64 VFERSINTLFLTEMVRGLMLTLKYFFEKNVTINYPFEKGPLSPRFRGEHALRRYPTGEER 123 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEAICPAQAITIE+ R DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGP Sbjct: 124 CIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 182 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 NFEFATET +EL YDKE+LL NGDRWE+EI N+ ++S YR Sbjct: 183 NFEFATETHEELLYDKEKLLENGDRWETEIAANLESESLYR 223 >gi|326519326|dbj|BAJ96662.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 223 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 114/161 (70%), Positives = 130/161 (80%), Gaps = 1/161 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 +F +++ LFL E V L L+YFF+ K TINYPFEKG SPRFRGEHALR Y GEER Sbjct: 64 VFERSINTLFLTEMVRGLMLTLKYFFERKVTINYPFEKGPLSPRFRGEHALRHYDTGEER 123 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEAICPAQAITIE+ R DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGP Sbjct: 124 CIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 182 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 NFEF+TET +EL YDKE+LL NGDRWE+EI N+ +++ YR Sbjct: 183 NFEFSTETHEELLYDKEKLLENGDRWETEIAENLKSEALYR 223 >gi|226505580|ref|NP_001149640.1| LOC100283266 [Zea mays] gi|194703360|gb|ACF85764.1| unknown [Zea mays] gi|195605168|gb|ACG24414.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Zea mays] gi|195628756|gb|ACG36208.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Zea mays] Length = 223 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 116/161 (72%), Positives = 131/161 (81%), Gaps = 1/161 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 +F +++ LFL E V L L+YFF+ TINYPFEKG SPRFRGEHALRRY +GEER Sbjct: 64 VFERSINTLFLTEMVRGLMLTLKYFFERNVTINYPFEKGPLSPRFRGEHALRRYESGEER 123 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEAICPAQAITIE+ R DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGP Sbjct: 124 CIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 182 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 NFEFATET +EL YDKE+LL NGDRWE+EI N+ ++S YR Sbjct: 183 NFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 223 >gi|254502708|ref|ZP_05114859.1| NADH-quinone oxidoreductase, chain I subfamily [Labrenzia alexandrii DFL-11] gi|222438779|gb|EEE45458.1| NADH-quinone oxidoreductase, chain I subfamily [Labrenzia alexandrii DFL-11] Length = 161 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 131/158 (82%), Positives = 140/158 (88%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 V LFL+EFV AFFL +RYFFK K T+NYPFEKG SPRFRGEHALRRYPNGEERCIA Sbjct: 4 QTVKSLFLQEFVSAFFLAMRYFFKPKPTVNYPFEKGPVSPRFRGEHALRRYPNGEERCIA 63 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEAICPAQAITIE+GPR +DGTRRT RYDIDM+KCIYCG CQEACPVDAIVEGPNFE Sbjct: 64 CKLCEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGFCQEACPVDAIVEGPNFE 123 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FATETR+ELYYDKE+LL NGDRWE EI RNI D+PYR Sbjct: 124 FATETREELYYDKEKLLANGDRWEREIARNIEMDAPYR 161 >gi|304391410|ref|ZP_07373352.1| NADH-quinone oxidoreductase subunit i [Ahrensia sp. R2A130] gi|303295639|gb|EFL89997.1| NADH-quinone oxidoreductase subunit i [Ahrensia sp. R2A130] Length = 163 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 124/163 (76%), Positives = 138/163 (84%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M LFL EFV AF L ++YFF K TINYP+EKG +SPRFRGEHALRRYPNGE Sbjct: 1 MSSLAQAGKSLFLLEFVKAFALGVKYFFAPKVTINYPYEKGESSPRFRGEHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVE Sbjct: 61 ERCIACKLCEAVCPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 120 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEF+TETR+ELYYDK++LL NG RWE E+ RNI D+PYR Sbjct: 121 GPNFEFSTETREELYYDKDKLLENGARWERELARNIALDAPYR 163 >gi|242766902|ref|XP_002341262.1| NADH-quinone oxidoreductase, 23 kDa subunit, putative [Talaromyces stipitatus ATCC 10500] gi|218724458|gb|EED23875.1| NADH-quinone oxidoreductase, 23 kDa subunit, putative [Talaromyces stipitatus ATCC 10500] Length = 225 Score = 188 bits (478), Expect = 2e-46, Method: Composition-based stats. Identities = 104/160 (65%), Positives = 120/160 (75%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + + E ++ L FF+ TI YPFEKG SPRFRGEHALRRYP+GEERC Sbjct: 67 LDKASKYFLMAELFRGMYVVLEQFFRPPYTIFYPFEKGPISPRFRGEHALRRYPSGEERC 126 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAITIE+ R DG+RRT RYDIDM KCIYCG CQE+CPVDAIVE PN Sbjct: 127 IACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGYCQESCPVDAIVESPN 185 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ATETR+EL Y+KE+LL NGD+WE E+ I D+PYR Sbjct: 186 AEYATETREELLYNKEKLLANGDKWEPELAAVIRADAPYR 225 >gi|291245007|ref|XP_002742384.1| PREDICTED: NADH dehydrogenase iron-sulfur protein 8, mitochondrial-like [Saccoglossus kowalevskii] Length = 207 Score = 188 bits (477), Expect = 2e-46, Method: Composition-based stats. Identities = 110/161 (68%), Positives = 124/161 (77%), Gaps = 1/161 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 + LFL E + + L Y F+ TI YPFEKG SPRFRGEHALRRYP+GEER Sbjct: 48 VTDRVARTLFLGELMRGLAMTLSYMFREPATIQYPFEKGPLSPRFRGEHALRRYPSGEER 107 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEAICPAQAITIE+ PR G+RRT RYDIDM KCIYCG CQEACPVDAIVEGP Sbjct: 108 CIACKLCEAICPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGYCQEACPVDAIVEGP 166 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 NFE++TET +EL Y+KE+LLNNGD+WE+EI NI D YR Sbjct: 167 NFEYSTETHEELLYNKEKLLNNGDKWEAEIAANIQADYLYR 207 >gi|300023445|ref|YP_003756056.1| NADH-quinone oxidoreductase, chain I [Hyphomicrobium denitrificans ATCC 51888] gi|299525266|gb|ADJ23735.1| NADH-quinone oxidoreductase, chain I [Hyphomicrobium denitrificans ATCC 51888] Length = 162 Score = 188 bits (477), Expect = 2e-46, Method: Composition-based stats. Identities = 126/158 (79%), Positives = 135/158 (85%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 LFL E V AF L LRYFF K T+NYP+EKG SPRFRGEHALRRYPNGEERCIA Sbjct: 5 RAAKSLFLTEIVVAFVLTLRYFFAPKKTLNYPYEKGPLSPRFRGEHALRRYPNGEERCIA 64 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEAICPAQAITIE+GPR +DGTRRT RYDIDM KCIYCGLCQEACPVDAIVEGPNFE Sbjct: 65 CKLCEAICPAQAITIEAGPRRNDGTRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGPNFE 124 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FATETR+EL+YDKERLL+NGDRWE EI +NI D+ YR Sbjct: 125 FATETREELFYDKERLLSNGDRWEREIAKNIALDAKYR 162 >gi|157821497|ref|NP_001099792.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial [Rattus norvegicus] gi|149061895|gb|EDM12318.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8 (predicted), isoform CRA_a [Rattus norvegicus] gi|149061896|gb|EDM12319.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8 (predicted), isoform CRA_a [Rattus norvegicus] gi|149061897|gb|EDM12320.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8 (predicted), isoform CRA_a [Rattus norvegicus] gi|165971299|gb|AAI58792.1| Ndufs8 protein [Rattus norvegicus] Length = 212 Score = 188 bits (477), Expect = 2e-46, Method: Composition-based stats. Identities = 111/164 (67%), Positives = 123/164 (75%), Gaps = 2/164 (1%) Query: 1 MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59 M+ L E + L Y F+ TINYPFEKG SPRFRGEHALRRYP+G Sbjct: 50 MKSATDSAARILMWTELFRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 109 Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 EERCIACKLCEAICPAQAITIE+ PR G+RRT RYDIDM KCIYCG CQEACPVDAIV Sbjct: 110 EERCIACKLCEAICPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 168 Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 EGPNFEF+TET +EL Y+KE+LLNNGD+WE+EI NI D YR Sbjct: 169 EGPNFEFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADYLYR 212 >gi|261206240|ref|XP_002627857.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Ajellomyces dermatitidis SLH14081] gi|239592916|gb|EEQ75497.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Ajellomyces dermatitidis SLH14081] gi|239610912|gb|EEQ87899.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Ajellomyces dermatitidis ER-3] gi|327357611|gb|EGE86468.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Ajellomyces dermatitidis ATCC 18188] Length = 235 Score = 188 bits (477), Expect = 2e-46, Method: Composition-based stats. Identities = 103/160 (64%), Positives = 119/160 (74%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + L E + ++ L FF+ TI YPFEKG SPRFRGEHALRRYP+GEERC Sbjct: 77 LDKAGKYFLLAEMLRGMYVVLEQFFRPPYTIFYPFEKGPISPRFRGEHALRRYPSGEERC 136 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPA AITIE+ R DG+RRT RYDIDM KCIYCG CQE+CPVDAIVE PN Sbjct: 137 IACKLCEAICPALAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQESCPVDAIVESPN 195 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ATETR+EL Y+KE+LL NGD+WE E+ D+PYR Sbjct: 196 AEYATETREELLYNKEKLLANGDKWEPELAAVARADAPYR 235 >gi|116792080|gb|ABK26223.1| unknown [Picea sitchensis] Length = 224 Score = 188 bits (477), Expect = 2e-46, Method: Composition-based stats. Identities = 116/161 (72%), Positives = 131/161 (81%), Gaps = 1/161 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 + +++ LFL E + L L+YFF+ K TINYPFEKG SPRFRGEHALRRYP GEER Sbjct: 65 VLDKSMNTLFLTEMIRGMMLGLKYFFEKKVTINYPFEKGPLSPRFRGEHALRRYPTGEER 124 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEAICPAQAITIE+ R DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGP Sbjct: 125 CIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 183 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 NFEFATET +EL YDKE+LL NGDRWE+EI N+ ++S YR Sbjct: 184 NFEFATETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 224 >gi|328869461|gb|EGG17839.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Dictyostelium fasciculatum] Length = 213 Score = 188 bits (477), Expect = 2e-46, Method: Composition-based stats. Identities = 113/162 (69%), Positives = 126/162 (77%), Gaps = 1/162 (0%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 +I + FL E + ++ + YFF+ K TINYPFEKG SPRFRGEHALRRYP GEE Sbjct: 53 KIVDEAANTFFLSEIMVGLYITMGYFFRKKCTINYPFEKGPLSPRFRGEHALRRYPTGEE 112 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLCEAICPAQAITIE+ PR G+RRT RYDIDM KCIYCG CQEACPVDAIVEG Sbjct: 113 RCIACKLCEAICPAQAITIEAEPRLD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 171 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 PNFEF TE+R EL Y+KE+LL NGDRWE+EI NI D YR Sbjct: 172 PNFEFTTESRIELLYNKEKLLQNGDRWETEIAANIAADYLYR 213 >gi|332249710|ref|XP_003274000.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial-like [Nomascus leucogenys] Length = 217 Score = 188 bits (477), Expect = 2e-46, Method: Composition-based stats. Identities = 111/164 (67%), Positives = 124/164 (75%), Gaps = 2/164 (1%) Query: 1 MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59 M+ + L E + L Y F+ TINYPFEKG SPRFRGEHALRRYP+G Sbjct: 55 MKSVTDRAARTLLWTELFRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 114 Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 EERCIACKLCEAICPAQAITIE+ PR G+RRT RYDIDM KCIYCG CQEACPVDAIV Sbjct: 115 EERCIACKLCEAICPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 173 Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 EGPNFEF+TET +EL Y+KE+LLNNGD+WE+EI NI D YR Sbjct: 174 EGPNFEFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADYLYR 217 >gi|222085585|ref|YP_002544115.1| NADH-ubiquinone oxidoreductase chain I protein [Agrobacterium radiobacter K84] gi|221723033|gb|ACM26189.1| NADH-ubiquinone oxidoreductase chain I protein [Agrobacterium radiobacter K84] Length = 165 Score = 188 bits (477), Expect = 2e-46, Method: Composition-based stats. Identities = 137/163 (84%), Positives = 144/163 (88%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M F VS +FLKEFVGAFFL +RYFFK K TINYPFEKG SPRFRGEHALRRYPNGE Sbjct: 3 MAGFSNAVSSVFLKEFVGAFFLSMRYFFKQKATINYPFEKGPVSPRFRGEHALRRYPNGE 62 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVE Sbjct: 63 ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 122 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEFATETR+ELY+DK RLL NGDRWE EI RNI DSPYR Sbjct: 123 GPNFEFATETREELYFDKARLLENGDRWEREIARNIAIDSPYR 165 >gi|109105179|ref|XP_001104103.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial [Macaca mulatta] gi|62287022|sp|Q60HE3|NDUS8_MACFA RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial; AltName: Full=Complex I-23kD; Short=CI-23kD; AltName: Full=NADH-ubiquinone oxidoreductase 23 kDa subunit; Flags: Precursor gi|52782251|dbj|BAD51972.1| NADH dehydrogenase Fe-S protein 8 [Macaca fascicularis] gi|90076936|dbj|BAE88148.1| unnamed protein product [Macaca fascicularis] Length = 210 Score = 188 bits (477), Expect = 2e-46, Method: Composition-based stats. Identities = 110/164 (67%), Positives = 124/164 (75%), Gaps = 2/164 (1%) Query: 1 MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59 M+ + L E + L Y F+ TINYPFEKG SPRFRGEHALRRYP+G Sbjct: 48 MKSVTDRAARTLLWTELFRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 107 Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 EERCIACKLCEA+CPAQAITIE+ PR G+RRT RYDIDM KCIYCG CQEACPVDAIV Sbjct: 108 EERCIACKLCEAVCPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 166 Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 EGPNFEF+TET +EL Y+KE+LLNNGD+WE+EI NI D YR Sbjct: 167 EGPNFEFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADYLYR 210 >gi|154248544|ref|YP_001419502.1| NADH dehydrogenase subunit I [Xanthobacter autotrophicus Py2] gi|226737417|sp|A7IP99|NUOI_XANP2 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|154162629|gb|ABS69845.1| NADH-quinone oxidoreductase, chain I [Xanthobacter autotrophicus Py2] Length = 162 Score = 188 bits (477), Expect = 2e-46, Method: Composition-based stats. Identities = 127/163 (77%), Positives = 137/163 (84%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M+ LFL E V FFL +RYFFK K T+NYPFEKG SPRFRGEHALRRYPNGE Sbjct: 1 MK-LDQAARGLFLTELVSGFFLAMRYFFKPKATLNYPFEKGPLSPRFRGEHALRRYPNGE 59 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE+GPR +DGTRRT RYDIDM+KCIYCG CQEACPVDAIVE Sbjct: 60 ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGFCQEACPVDAIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEFA ETR+ELYYDKE+LL NGDRWE EI R+I D+PYR Sbjct: 120 GPNFEFAAETREELYYDKEKLLANGDRWEREIARSIAMDAPYR 162 >gi|260462240|ref|ZP_05810484.1| NADH-quinone oxidoreductase, chain I [Mesorhizobium opportunistum WSM2075] gi|259032100|gb|EEW33367.1| NADH-quinone oxidoreductase, chain I [Mesorhizobium opportunistum WSM2075] Length = 163 Score = 188 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 128/163 (78%), Positives = 137/163 (84%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M L L++FV AFFL +R FF K TINYP EKG SPRFRGEHALRRYPNGE Sbjct: 1 MGALTQAAKSLLLQDFVSAFFLSMRQFFAPKETINYPHEKGPVSPRFRGEHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVE Sbjct: 61 ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 120 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEFATETR+ELYYDK+RLL NGDRWE E+ RNI DSPYR Sbjct: 121 GPNFEFATETREELYYDKDRLLANGDRWERELARNISLDSPYR 163 >gi|114051372|ref|NP_001040316.1| NADH dehydrogenase ubiquinone Fe-S 8 [Bombyx mori] gi|87248369|gb|ABD36237.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8 [Bombyx mori] Length = 221 Score = 188 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 110/159 (69%), Positives = 121/159 (76%), Gaps = 1/159 (0%) Query: 5 RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64 +F E F + L + FK TINYPFEKG SPRFRGEHALRRYP+GEERCI Sbjct: 64 DRAAQTMFWTELARGFAVTLAHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEERCI 123 Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 ACKLCEAICPAQAITIE+ R G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNF Sbjct: 124 ACKLCEAICPAQAITIEAEERKD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNF 182 Query: 125 EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 EF TET +EL Y+KE+LL+NGD+WESEI NI D YR Sbjct: 183 EFTTETHEELLYNKEKLLSNGDKWESEIASNIRADHLYR 221 >gi|260833833|ref|XP_002611916.1| hypothetical protein BRAFLDRAFT_287714 [Branchiostoma floridae] gi|229297289|gb|EEN67925.1| hypothetical protein BRAFLDRAFT_287714 [Branchiostoma floridae] Length = 218 Score = 188 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 112/161 (69%), Positives = 126/161 (78%), Gaps = 1/161 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 I + LFL E + + + Y F+ TINYPFEKG SPRFRGEHALRRYP+GEER Sbjct: 59 ITDKAATTLFLTELIRGLSMAISYMFREPATINYPFEKGPLSPRFRGEHALRRYPSGEER 118 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEAICPAQAITIE+ PR G+RRT RYDIDM KCIYCG CQEACPVDAIVEGP Sbjct: 119 CIACKLCEAICPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 177 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 NFEF+TET +EL Y+KE+LLNNGD+WESEI N+ D YR Sbjct: 178 NFEFSTETHEELLYNKEKLLNNGDKWESEIAANLQADFLYR 218 >gi|163793195|ref|ZP_02187171.1| NADH dehydrogenase subunit I [alpha proteobacterium BAL199] gi|159181841|gb|EDP66353.1| NADH dehydrogenase subunit I [alpha proteobacterium BAL199] Length = 159 Score = 188 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 116/155 (74%), Positives = 129/155 (83%), Gaps = 1/155 (0%) Query: 9 SFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKL 68 L L E + L LRYFF+ K TINYP+EKG SPRFRGEH LRRYPNGEERCIACKL Sbjct: 6 KSLLLAELLSGMSLTLRYFFRPKVTINYPYEKGPISPRFRGEHVLRRYPNGEERCIACKL 65 Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 CEAICPAQAITIE+ PR G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFEFAT Sbjct: 66 CEAICPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFAT 124 Query: 129 ETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 ETR+EL+Y+KE+LL NGDRWE+EI +N+ D+PYR Sbjct: 125 ETREELFYNKEKLLANGDRWEAEISQNLTADAPYR 159 >gi|225707568|gb|ACO09630.1| NADH dehydrogenase iron-sulfur protein 8, mitochondrial precursor [Osmerus mordax] Length = 210 Score = 188 bits (477), Expect = 3e-46, Method: Composition-based stats. Identities = 111/164 (67%), Positives = 124/164 (75%), Gaps = 2/164 (1%) Query: 1 MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59 M+ I L E + + Y F+ TINYPFEKG SPRFRGEHALRRYP+G Sbjct: 48 MKSITDRAAQTLLWTELFRGLGMTMSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 107 Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 EERCIACKLCEAICPAQAITIE+ R G+RRT RYDIDM KCIYCG CQEACPVDAIV Sbjct: 108 EERCIACKLCEAICPAQAITIEAETRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 166 Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 EGPNFEF+TET +EL Y+KE+LLNNGDRWE+EI NI +D YR Sbjct: 167 EGPNFEFSTETHEELLYNKEKLLNNGDRWEAEIAANIQSDYLYR 210 >gi|326519500|dbj|BAK00123.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 223 Score = 187 bits (476), Expect = 3e-46, Method: Composition-based stats. Identities = 115/161 (71%), Positives = 131/161 (81%), Gaps = 1/161 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 +F +++ LFL E V L L+YFF+ K TINYPFEKG SPRFRGEHALRRY GEER Sbjct: 64 VFERSINTLFLTEMVRGLMLTLKYFFERKVTINYPFEKGPLSPRFRGEHALRRYDTGEER 123 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEAICPAQAITIE+ R DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGP Sbjct: 124 CIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 182 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 NFEF+TET +EL YDKE+LL NGDRWE+EI N+ +++ YR Sbjct: 183 NFEFSTETHEELLYDKEKLLENGDRWETEIAENLKSEALYR 223 >gi|11466496|ref|NP_044745.1| NADH dehydrogenase subunit 8 [Reclinomonas americana] gi|6225784|sp|O21233|NDUS8_RECAM RecName: Full=NADH-ubiquinone oxidoreductase subunit 8 gi|2258326|gb|AAD11860.1| NADH dehydrogenase subunit 8 [Reclinomonas americana] Length = 162 Score = 187 bits (476), Expect = 3e-46, Method: Composition-based stats. Identities = 117/163 (71%), Positives = 126/163 (77%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M I LFL E V L L YFF+ K T+NYPFEKG SPRFRGEHALRRY GE Sbjct: 1 MTIINKTAQTLFLTELVKGMSLTLDYFFRKKVTLNYPFEKGPLSPRFRGEHALRRYQTGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIES PR G+RRT RYDIDM KCIYCG CQEACPVDAIVE Sbjct: 61 ERCIACKLCEAICPAQAITIESEPRID-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEFATET +EL YDKE+LL NGDRWE+EI N+ ++ YR Sbjct: 120 GPNFEFATETHEELLYDKEKLLQNGDRWETEIAANLANEALYR 162 >gi|23501697|ref|NP_697824.1| NADH dehydrogenase subunit I [Brucella suis 1330] gi|161618774|ref|YP_001592661.1| NADH dehydrogenase subunit I [Brucella canis ATCC 23365] gi|254704125|ref|ZP_05165953.1| NADH dehydrogenase subunit I [Brucella suis bv. 3 str. 686] gi|260566626|ref|ZP_05837096.1| NADH-quinone oxidoreductase subunit I [Brucella suis bv. 4 str. 40] gi|261754791|ref|ZP_05998500.1| NADH-quinone oxidoreductase subunit I [Brucella suis bv. 3 str. 686] gi|81752799|sp|Q8G1A9|NUOI_BRUSU RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|189030924|sp|A9MAI7|NUOI_BRUC2 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|23347620|gb|AAN29739.1| NADH dehydrogenase I, I subunit [Brucella suis 1330] gi|161335585|gb|ABX61890.1| NADH-quinone oxidoreductase, chain I [Brucella canis ATCC 23365] gi|260156144|gb|EEW91224.1| NADH-quinone oxidoreductase subunit I [Brucella suis bv. 4 str. 40] gi|261744544|gb|EEY32470.1| NADH-quinone oxidoreductase subunit I [Brucella suis bv. 3 str. 686] Length = 163 Score = 187 bits (476), Expect = 3e-46, Method: Composition-based stats. Identities = 126/163 (77%), Positives = 135/163 (82%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M L LKEF AF L +R FF K T+NYP EKG SPRFRGEHALRRYPNGE Sbjct: 1 MASITQAAKSLLLKEFASAFALSMRQFFAPKATLNYPHEKGPVSPRFRGEHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVE Sbjct: 61 ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 120 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEFATETR+ELYYDK++LL NGDRWE EI RNI D+PYR Sbjct: 121 GPNFEFATETREELYYDKDKLLANGDRWEREIARNIAMDAPYR 163 >gi|283046736|ref|NP_001164315.1| NADH:ubiquinone reductase 23kD subunit precursor [Tribolium castaneum] gi|270009224|gb|EFA05672.1| hypothetical protein TcasGA2_TC015022 [Tribolium castaneum] Length = 212 Score = 187 bits (476), Expect = 3e-46, Method: Composition-based stats. Identities = 112/161 (69%), Positives = 124/161 (77%), Gaps = 1/161 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 + +F E V F + L + FK TINYPFEKG SPRFRGEHALRRYP+GEER Sbjct: 53 VTDRAAEKVFFTELVRGFAVTLAHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEER 112 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEAICPAQAITIE+ R G+RRT RYDIDM KCIYCG CQEACPVDAIVEGP Sbjct: 113 CIACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 171 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 NFEF+TET +EL Y+KE+LLNNGD+WESEI NI D YR Sbjct: 172 NFEFSTETHEELLYNKEKLLNNGDKWESEIAANIHADHLYR 212 >gi|62289759|ref|YP_221552.1| NADH dehydrogenase subunit I [Brucella abortus bv. 1 str. 9-941] gi|82699687|ref|YP_414261.1| NADH dehydrogenase subunit I [Brucella melitensis biovar Abortus 2308] gi|148560593|ref|YP_001258788.1| NADH dehydrogenase subunit I [Brucella ovis ATCC 25840] gi|189024004|ref|YP_001934772.1| NADH dehydrogenase subunit I [Brucella abortus S19] gi|225627307|ref|ZP_03785344.1| NADH-quinone oxidoreductase, chain I [Brucella ceti str. Cudo] gi|225852326|ref|YP_002732559.1| NADH dehydrogenase subunit I [Brucella melitensis ATCC 23457] gi|237815246|ref|ZP_04594244.1| NADH-quinone oxidoreductase, chain I [Brucella abortus str. 2308 A] gi|254689066|ref|ZP_05152320.1| NADH dehydrogenase subunit I [Brucella abortus bv. 6 str. 870] gi|254693548|ref|ZP_05155376.1| NADH dehydrogenase subunit I [Brucella abortus bv. 3 str. Tulya] gi|254697200|ref|ZP_05159028.1| NADH dehydrogenase subunit I [Brucella abortus bv. 2 str. 86/8/59] gi|254701578|ref|ZP_05163406.1| NADH dehydrogenase subunit I [Brucella suis bv. 5 str. 513] gi|254706975|ref|ZP_05168803.1| NADH dehydrogenase subunit I [Brucella pinnipedialis M163/99/10] gi|254709918|ref|ZP_05171729.1| NADH dehydrogenase subunit I [Brucella pinnipedialis B2/94] gi|254713919|ref|ZP_05175730.1| NADH dehydrogenase subunit I [Brucella ceti M644/93/1] gi|254717023|ref|ZP_05178834.1| NADH dehydrogenase subunit I [Brucella ceti M13/05/1] gi|254718919|ref|ZP_05180730.1| NADH dehydrogenase subunit I [Brucella sp. 83/13] gi|254730096|ref|ZP_05188674.1| NADH dehydrogenase subunit I [Brucella abortus bv. 4 str. 292] gi|256031411|ref|ZP_05445025.1| NADH dehydrogenase subunit I [Brucella pinnipedialis M292/94/1] gi|256060922|ref|ZP_05451080.1| NADH dehydrogenase subunit I [Brucella neotomae 5K33] gi|256113345|ref|ZP_05454203.1| NADH dehydrogenase subunit I [Brucella melitensis bv. 3 str. Ether] gi|256159532|ref|ZP_05457300.1| NADH dehydrogenase subunit I [Brucella ceti M490/95/1] gi|256254819|ref|ZP_05460355.1| NADH dehydrogenase subunit I [Brucella ceti B1/94] gi|256257315|ref|ZP_05462851.1| NADH dehydrogenase subunit I [Brucella abortus bv. 9 str. C68] gi|256264175|ref|ZP_05466707.1| NADH-quinone oxidoreductase subunit I [Brucella melitensis bv. 2 str. 63/9] gi|256369242|ref|YP_003106750.1| NADH dehydrogenase subunit I [Brucella microti CCM 4915] gi|260168545|ref|ZP_05755356.1| NADH dehydrogenase subunit I [Brucella sp. F5/99] gi|260545491|ref|ZP_05821232.1| NADH-quinone oxidoreductase subunit I [Brucella abortus NCTC 8038] gi|260754564|ref|ZP_05866912.1| NDH-1 subunit I [Brucella abortus bv. 6 str. 870] gi|260757785|ref|ZP_05870133.1| NDH-1 subunit I [Brucella abortus bv. 4 str. 292] gi|260761610|ref|ZP_05873953.1| NDH-1 subunit I [Brucella abortus bv. 2 str. 86/8/59] gi|260883591|ref|ZP_05895205.1| NADH-quinone oxidoreductase subunit I [Brucella abortus bv. 9 str. C68] gi|261213813|ref|ZP_05928094.1| NDH-1 subunit I [Brucella abortus bv. 3 str. Tulya] gi|261218830|ref|ZP_05933111.1| NADH-quinone oxidoreductase subunit I [Brucella ceti M13/05/1] gi|261222000|ref|ZP_05936281.1| NADH-quinone oxidoreductase subunit I [Brucella ceti B1/94] gi|261314438|ref|ZP_05953635.1| NADH-quinone oxidoreductase subunit I [Brucella pinnipedialis M163/99/10] gi|261317464|ref|ZP_05956661.1| NADH-quinone oxidoreductase subunit I [Brucella pinnipedialis B2/94] gi|261321671|ref|ZP_05960868.1| NADH-quinone oxidoreductase subunit I [Brucella ceti M644/93/1] gi|261324922|ref|ZP_05964119.1| NADH-quinone oxidoreductase subunit I [Brucella neotomae 5K33] gi|261752131|ref|ZP_05995840.1| NADH-quinone oxidoreductase subunit I [Brucella suis bv. 5 str. 513] gi|261758018|ref|ZP_06001727.1| NADH dehydrogenase subunit I [Brucella sp. F5/99] gi|265983906|ref|ZP_06096641.1| NADH-quinone oxidoreductase subunit I [Brucella sp. 83/13] gi|265988500|ref|ZP_06101057.1| NADH-quinone oxidoreductase subunit I [Brucella pinnipedialis M292/94/1] gi|265994751|ref|ZP_06107308.1| NADH-quinone oxidoreductase subunit I [Brucella melitensis bv. 3 str. Ether] gi|265997964|ref|ZP_06110521.1| NADH-quinone oxidoreductase subunit I [Brucella ceti M490/95/1] gi|294852167|ref|ZP_06792840.1| NADH dehydrogenase I subunit I [Brucella sp. NVSL 07-0026] gi|297248164|ref|ZP_06931882.1| NADH dehydrogenase I subunit I [Brucella abortus bv. 5 str. B3196] gi|306838233|ref|ZP_07471085.1| NADH-quinone oxidoreductase, chain I [Brucella sp. NF 2653] gi|306841952|ref|ZP_07474630.1| NADH-quinone oxidoreductase, chain I [Brucella sp. BO2] gi|306843747|ref|ZP_07476346.1| NADH-quinone oxidoreductase, chain I [Brucella sp. BO1] gi|75505301|sp|Q57DU3|NUOI_BRUAB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|115502518|sp|Q2YNF5|NUOI_BRUA2 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|166918785|sp|A5VPZ1|NUOI_BRUO2 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|226737383|sp|B2S551|NUOI_BRUA1 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|254767832|sp|C0RIE7|NUOI_BRUMB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|62195891|gb|AAX74191.1| NuoI, NADH dehydrogenase I, I subunit [Brucella abortus bv. 1 str. 9-941] gi|82615788|emb|CAJ10786.1| 7Fe ferredoxin:3Fe-4S ferredoxin:4Fe-4S ferredoxin, iron-sulfur binding domain [Brucella melitensis biovar Abortus 2308] gi|148371850|gb|ABQ61829.1| NADH dehydrogenase I, I subunit [Brucella ovis ATCC 25840] gi|189019576|gb|ACD72298.1| 7Fe ferredoxin [Brucella abortus S19] gi|225617312|gb|EEH14357.1| NADH-quinone oxidoreductase, chain I [Brucella ceti str. Cudo] gi|225640691|gb|ACO00605.1| NADH-quinone oxidoreductase, chain I [Brucella melitensis ATCC 23457] gi|237790083|gb|EEP64293.1| NADH-quinone oxidoreductase, chain I [Brucella abortus str. 2308 A] gi|255999402|gb|ACU47801.1| NADH dehydrogenase subunit I [Brucella microti CCM 4915] gi|260096898|gb|EEW80773.1| NADH-quinone oxidoreductase subunit I [Brucella abortus NCTC 8038] gi|260668103|gb|EEX55043.1| NDH-1 subunit I [Brucella abortus bv. 4 str. 292] gi|260672042|gb|EEX58863.1| NDH-1 subunit I [Brucella abortus bv. 2 str. 86/8/59] gi|260674672|gb|EEX61493.1| NDH-1 subunit I [Brucella abortus bv. 6 str. 870] gi|260873119|gb|EEX80188.1| NADH-quinone oxidoreductase subunit I [Brucella abortus bv. 9 str. C68] gi|260915420|gb|EEX82281.1| NDH-1 subunit I [Brucella abortus bv. 3 str. Tulya] gi|260920584|gb|EEX87237.1| NADH-quinone oxidoreductase subunit I [Brucella ceti B1/94] gi|260923919|gb|EEX90487.1| NADH-quinone oxidoreductase subunit I [Brucella ceti M13/05/1] gi|261294361|gb|EEX97857.1| NADH-quinone oxidoreductase subunit I [Brucella ceti M644/93/1] gi|261296687|gb|EEY00184.1| NADH-quinone oxidoreductase subunit I [Brucella pinnipedialis B2/94] gi|261300902|gb|EEY04399.1| NADH-quinone oxidoreductase subunit I [Brucella neotomae 5K33] gi|261303464|gb|EEY06961.1| NADH-quinone oxidoreductase subunit I [Brucella pinnipedialis M163/99/10] gi|261738002|gb|EEY25998.1| NADH dehydrogenase subunit I [Brucella sp. F5/99] gi|261741884|gb|EEY29810.1| NADH-quinone oxidoreductase subunit I [Brucella suis bv. 5 str. 513] gi|262552432|gb|EEZ08422.1| NADH-quinone oxidoreductase subunit I [Brucella ceti M490/95/1] gi|262765864|gb|EEZ11653.1| NADH-quinone oxidoreductase subunit I [Brucella melitensis bv. 3 str. Ether] gi|263094393|gb|EEZ18238.1| NADH-quinone oxidoreductase subunit I [Brucella melitensis bv. 2 str. 63/9] gi|264660697|gb|EEZ30958.1| NADH-quinone oxidoreductase subunit I [Brucella pinnipedialis M292/94/1] gi|264662498|gb|EEZ32759.1| NADH-quinone oxidoreductase subunit I [Brucella sp. 83/13] gi|294820756|gb|EFG37755.1| NADH dehydrogenase I subunit I [Brucella sp. NVSL 07-0026] gi|297175333|gb|EFH34680.1| NADH dehydrogenase I subunit I [Brucella abortus bv. 5 str. B3196] gi|306275938|gb|EFM57651.1| NADH-quinone oxidoreductase, chain I [Brucella sp. BO1] gi|306287985|gb|EFM59393.1| NADH-quinone oxidoreductase, chain I [Brucella sp. BO2] gi|306406677|gb|EFM62904.1| NADH-quinone oxidoreductase, chain I [Brucella sp. NF 2653] gi|326408833|gb|ADZ65898.1| 7Fe ferredoxin [Brucella melitensis M28] gi|326538549|gb|ADZ86764.1| NADH-quinone oxidoreductase, chain I [Brucella melitensis M5-90] Length = 163 Score = 187 bits (476), Expect = 3e-46, Method: Composition-based stats. Identities = 126/163 (77%), Positives = 135/163 (82%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M L LKEF AF L +R FF K T+NYP EKG SPRFRGEHALRRYPNGE Sbjct: 1 MASIAQAAKSLLLKEFASAFALSMRQFFAPKATLNYPHEKGPVSPRFRGEHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVE Sbjct: 61 ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 120 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEFATETR+ELYYDK++LL NGDRWE EI RNI D+PYR Sbjct: 121 GPNFEFATETREELYYDKDKLLANGDRWEREIARNIAMDAPYR 163 >gi|145255608|ref|XP_001399017.1| NADH-ubiquinone oxidoreductase subunit [Aspergillus niger CBS 513.88] gi|134084609|emb|CAK97485.1| unnamed protein product [Aspergillus niger] Length = 224 Score = 187 bits (476), Expect = 3e-46, Method: Composition-based stats. Identities = 104/160 (65%), Positives = 119/160 (74%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + + E + ++ L FF+ TI YPFEKG SPRFRGEHALRRYP GEERC Sbjct: 66 LDKAGKYFLMAELLRGMYVVLEQFFRPPYTIFYPFEKGPISPRFRGEHALRRYPTGEERC 125 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAITIE+ R DG+RRT RYDIDM KCIYCG CQE+CPVDAIVE N Sbjct: 126 IACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGYCQESCPVDAIVETSN 184 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ATETR+EL Y+KE+LL NGD+WE EI I D+PYR Sbjct: 185 AEYATETREELLYNKEKLLANGDKWEPEIAAAIRADAPYR 224 >gi|307942127|ref|ZP_07657478.1| NADH-quinone oxidoreductase subunit i 2 [Roseibium sp. TrichSKD4] gi|307774413|gb|EFO33623.1| NADH-quinone oxidoreductase subunit i 2 [Roseibium sp. TrichSKD4] Length = 162 Score = 187 bits (476), Expect = 3e-46, Method: Composition-based stats. Identities = 130/160 (81%), Positives = 138/160 (86%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 L LKEFV AFFL +RYFFK K T+NYPFEKG SPRFRGEHALRRYPNGEERC Sbjct: 3 LDQAAKSLLLKEFVSAFFLAMRYFFKPKPTVNYPFEKGPVSPRFRGEHALRRYPNGEERC 62 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAITIE+GPR +DGTRRT RYDIDM+KCIYCG CQEACPVDAIVEGPN Sbjct: 63 IACKLCEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGFCQEACPVDAIVEGPN 122 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FEFATETR+ELYY+KERLL NGDRWE EI RNI D+PYR Sbjct: 123 FEFATETREELYYNKERLLANGDRWEREIARNIEMDAPYR 162 >gi|212528252|ref|XP_002144283.1| NADH-quinone oxidoreductase, 23 kDa subunit, putative [Penicillium marneffei ATCC 18224] gi|210073681|gb|EEA27768.1| NADH-quinone oxidoreductase, 23 kDa subunit, putative [Penicillium marneffei ATCC 18224] Length = 225 Score = 187 bits (476), Expect = 3e-46, Method: Composition-based stats. Identities = 103/160 (64%), Positives = 119/160 (74%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + + E ++ L FF+ TI YPFEKG SPRFRGEHALRRYP+GEERC Sbjct: 67 LDKATKYFLMAELFRGMYVVLEQFFRPPYTIFYPFEKGPISPRFRGEHALRRYPSGEERC 126 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAITIE+ R DG+RRT RYDIDM KCIYCG CQE+CPVDAIVE PN Sbjct: 127 IACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGYCQESCPVDAIVESPN 185 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ATETR+EL Y+KE+LL NGD+WE E+ D+PYR Sbjct: 186 AEYATETREELLYNKEKLLANGDKWEPELAAVARADAPYR 225 >gi|163759532|ref|ZP_02166617.1| NADH dehydrogenase subunit I [Hoeflea phototrophica DFL-43] gi|162283129|gb|EDQ33415.1| NADH dehydrogenase subunit I [Hoeflea phototrophica DFL-43] Length = 162 Score = 187 bits (476), Expect = 3e-46, Method: Composition-based stats. Identities = 133/158 (84%), Positives = 141/158 (89%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 LFLKEFVGAFFL +RYFFK K T+NYP+EKG SPRFRGEHALRRYPNGEERCIA Sbjct: 5 QAAKSLFLKEFVGAFFLSMRYFFKPKATVNYPYEKGPVSPRFRGEHALRRYPNGEERCIA 64 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVEGPNFE Sbjct: 65 CKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVEGPNFE 124 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FATETR+ELYYDK+RLL NGDRWE EI RNI DSPYR Sbjct: 125 FATETREELYYDKDRLLANGDRWEREIARNIAIDSPYR 162 >gi|209885060|ref|YP_002288917.1| i subunit of NADH-quinone oxidoreductase [Oligotropha carboxidovorans OM5] gi|226737405|sp|B6JH51|NUOI_OLICO RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|209873256|gb|ACI93052.1| i subunit of NADH-quinone oxidoreductase [Oligotropha carboxidovorans OM5] Length = 162 Score = 187 bits (476), Expect = 3e-46, Method: Composition-based stats. Identities = 129/158 (81%), Positives = 138/158 (87%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 V+ L LKEF AF + +RYFFK K T+NYPFEK SPRFRGEHALRRYPNGEERCIA Sbjct: 5 SAVNSLLLKEFAAAFVVTMRYFFKPKPTVNYPFEKNPISPRFRGEHALRRYPNGEERCIA 64 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCGLCQEACPVDAIVEGPNFE Sbjct: 65 CKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGLCQEACPVDAIVEGPNFE 124 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FATETR+ELYYDK RLL NGDRWE EI RNI D+PYR Sbjct: 125 FATETREELYYDKARLLANGDRWEREIARNIEQDAPYR 162 >gi|85717021|ref|ZP_01047983.1| NADH dehydrogenase subunit I [Nitrobacter sp. Nb-311A] gi|85696145|gb|EAQ34041.1| NADH dehydrogenase subunit I [Nitrobacter sp. Nb-311A] Length = 162 Score = 187 bits (476), Expect = 3e-46, Method: Composition-based stats. Identities = 127/162 (78%), Positives = 137/162 (84%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 L L EF+ AFFL +RYFFK K TINYPFEK SPRFRGEHALRRYPNGEE Sbjct: 1 MSINATARSLLLTEFISAFFLTMRYFFKPKPTINYPFEKNPISPRFRGEHALRRYPNGEE 60 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCGLCQEACPVDAIVEG Sbjct: 61 RCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGLCQEACPVDAIVEG 120 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 PNFEFATETR+ELYYDK++LL NGDRWE EI + I D+PYR Sbjct: 121 PNFEFATETREELYYDKDKLLANGDRWEREIAKAIELDAPYR 162 >gi|299135024|ref|ZP_07028215.1| NADH-quinone oxidoreductase, chain I [Afipia sp. 1NLS2] gi|298590001|gb|EFI50205.1| NADH-quinone oxidoreductase, chain I [Afipia sp. 1NLS2] Length = 162 Score = 187 bits (476), Expect = 3e-46, Method: Composition-based stats. Identities = 128/158 (81%), Positives = 138/158 (87%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 V+ L LKEF AF + +RYFFK K T+NYPFEK SPRFRGEHALRRYPNGEERCIA Sbjct: 5 SAVNSLLLKEFAAAFVVTMRYFFKPKPTVNYPFEKNPISPRFRGEHALRRYPNGEERCIA 64 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCGLCQEACPVDAIVEGPNFE Sbjct: 65 CKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGLCQEACPVDAIVEGPNFE 124 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FATETR+ELYYDK RLL NGDRWE EI +NI D+PYR Sbjct: 125 FATETREELYYDKARLLANGDRWEREIAKNIEQDAPYR 162 >gi|54611544|gb|AAH21616.2| NADH dehydrogenase (ubiquinone) Fe-S protein 8 [Mus musculus] Length = 212 Score = 187 bits (476), Expect = 3e-46, Method: Composition-based stats. Identities = 110/159 (69%), Positives = 122/159 (76%), Gaps = 1/159 (0%) Query: 5 RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64 L E + + L Y F+ TINYPFEKG SPRFRGEHALRRYP+GEERCI Sbjct: 55 DSAARILMWTELIRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSGEERCI 114 Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 ACKLCEAICPAQAITIE+ PR G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNF Sbjct: 115 ACKLCEAICPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNF 173 Query: 125 EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 EF+TET +EL Y+KE+LLNNGD+WE+EI NI D YR Sbjct: 174 EFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADYLYR 212 >gi|46195430|ref|NP_659119.2| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial precursor [Mus musculus] gi|47117242|sp|Q8K3J1|NDUS8_MOUSE RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial; AltName: Full=Complex I-23kD; Short=CI-23kD; AltName: Full=NADH-ubiquinone oxidoreductase 23 kDa subunit; Flags: Precursor gi|22074762|gb|AAM34451.1| NADH dehydrogenase:ubiquinone Fe-S protein 8 [Mus musculus] gi|56540975|gb|AAH86766.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8 [Mus musculus] gi|74139889|dbj|BAE31784.1| unnamed protein product [Mus musculus] gi|74150399|dbj|BAE32243.1| unnamed protein product [Mus musculus] gi|74204045|dbj|BAE29018.1| unnamed protein product [Mus musculus] gi|74204318|dbj|BAE39914.1| unnamed protein product [Mus musculus] gi|74227922|dbj|BAE37960.1| unnamed protein product [Mus musculus] gi|148701022|gb|EDL32969.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, isoform CRA_a [Mus musculus] gi|148701023|gb|EDL32970.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, isoform CRA_a [Mus musculus] Length = 212 Score = 187 bits (475), Expect = 4e-46, Method: Composition-based stats. Identities = 110/159 (69%), Positives = 122/159 (76%), Gaps = 1/159 (0%) Query: 5 RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64 L E + + L Y F+ TINYPFEKG SPRFRGEHALRRYP+GEERCI Sbjct: 55 DNAARILMWTELIRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSGEERCI 114 Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 ACKLCEAICPAQAITIE+ PR G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNF Sbjct: 115 ACKLCEAICPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNF 173 Query: 125 EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 EF+TET +EL Y+KE+LLNNGD+WE+EI NI D YR Sbjct: 174 EFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADYLYR 212 >gi|162148803|ref|YP_001603264.1| NADH dehydrogenase subunit I [Gluconacetobacter diazotrophicus PAl 5] gi|209545449|ref|YP_002277678.1| NADH dehydrogenase subunit I [Gluconacetobacter diazotrophicus PAl 5] gi|161787380|emb|CAP56975.1| NADH-quinone oxidoreductase chain I [Gluconacetobacter diazotrophicus PAl 5] gi|209533126|gb|ACI53063.1| NADH-quinone oxidoreductase, chain I [Gluconacetobacter diazotrophicus PAl 5] Length = 162 Score = 187 bits (475), Expect = 4e-46, Method: Composition-based stats. Identities = 112/163 (68%), Positives = 125/163 (76%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M F V L E V + FK K TINYP+EKG SPRFRGEHALRRYPNGE Sbjct: 1 MGHFDRTVRSFLLAELVAGMGATFKAMFKPKVTINYPYEKGPLSPRFRGEHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA CPA+AITIES PR G+RRT RYDIDM KCIYCGLC+EACPVDAIVE Sbjct: 61 ERCIACKLCEATCPAEAITIESEPRDD-GSRRTTRYDIDMTKCIYCGLCEEACPVDAIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPN+EFATETR+EL Y+K++LL NGDRWES + R + D+PYR Sbjct: 120 GPNYEFATETREELMYNKDKLLANGDRWESVLARRLELDAPYR 162 >gi|328773488|gb|EGF83525.1| hypothetical protein BATDEDRAFT_15687 [Batrachochytrium dendrobatidis JAM81] Length = 223 Score = 187 bits (475), Expect = 4e-46, Method: Composition-based stats. Identities = 109/161 (67%), Positives = 124/161 (77%), Gaps = 1/161 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 + +FL E + F+ FK TI YPFEKG SPRFRGEHALRRYP GEER Sbjct: 64 VLDRVAQEMFLTEILRTMFVVFEQMFKPPYTIMYPFEKGPLSPRFRGEHALRRYPTGEER 123 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEAICPAQAITIE+ PR DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGP Sbjct: 124 CIACKLCEAICPAQAITIEAEPR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 182 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 NFE++TET +EL Y+KE+LL+NGD+WE EI RN+ +D YR Sbjct: 183 NFEYSTETHEELLYNKEKLLSNGDKWEVEIARNLKSDHLYR 223 >gi|114327958|ref|YP_745115.1| NADH dehydrogenase subunit I [Granulibacter bethesdensis CGDNIH1] gi|122327080|sp|Q0BSL0|NUOI_GRABC RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|114316132|gb|ABI62192.1| NADH-quinone oxidoreductase chain I [Granulibacter bethesdensis CGDNIH1] Length = 162 Score = 187 bits (475), Expect = 4e-46, Method: Composition-based stats. Identities = 112/163 (68%), Positives = 125/163 (76%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + L E V L L+YFFK K TINYP+EK SPRF+GEHALRRY NGE Sbjct: 1 MALLDRTARSFLLTEIVSGMALTLKYFFKPKATINYPYEKNPISPRFKGEHALRRYANGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIE+ PR G+RRT RYDIDM KCIYCGLC+EACPVDAIVE Sbjct: 61 ERCIACKLCEAVCPALAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGLCEEACPVDAIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPN EFATETR+EL Y+K+RLL NGDRWE EI R + D+PYR Sbjct: 120 GPNLEFATETREELMYNKDRLLANGDRWEPEIARRLELDAPYR 162 >gi|110633384|ref|YP_673592.1| NADH dehydrogenase subunit I [Mesorhizobium sp. BNC1] gi|122966121|sp|Q11JJ8|NUOI_MESSB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|110284368|gb|ABG62427.1| NADH dehydrogenase subunit I [Chelativorans sp. BNC1] Length = 163 Score = 187 bits (475), Expect = 4e-46, Method: Composition-based stats. Identities = 125/163 (76%), Positives = 135/163 (82%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M L LKEF GA L +R FF K T+NYP EKG SPRFRGEHALRRYPNGE Sbjct: 1 MSALAQAAKSLLLKEFFGAVVLSMRQFFAPKATLNYPHEKGPLSPRFRGEHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVE Sbjct: 61 ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 120 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEFATETR+ELYYDK++LL NGDRWE E+ RNI D+PYR Sbjct: 121 GPNFEFATETREELYYDKDKLLANGDRWERELARNIALDAPYR 163 >gi|85708744|ref|ZP_01039810.1| NADH dehydrogenase subunit I [Erythrobacter sp. NAP1] gi|85690278|gb|EAQ30281.1| NADH dehydrogenase subunit I [Erythrobacter sp. NAP1] Length = 162 Score = 187 bits (475), Expect = 4e-46, Method: Composition-based stats. Identities = 116/163 (71%), Positives = 128/163 (78%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + L EF+ A L L+YFFK K TINYPFEK SPRFRGEHALRRYPNGE Sbjct: 1 MSTATQLLKSFTLWEFLKAHSLTLKYFFKPKVTINYPFEKSPLSPRFRGEHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPAQAITIE+ PR DG+RRT RYDIDM KCIYCG CQEACPVDAIVE Sbjct: 61 ERCIACKLCEAVCPAQAITIEAEPR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFE+ATETR+EL YDK +LL NGD+WE I N+ D+PYR Sbjct: 120 GPNFEYATETREELLYDKAKLLANGDKWERAIAANLEADAPYR 162 >gi|168027577|ref|XP_001766306.1| predicted protein [Physcomitrella patens subsp. patens] gi|162682520|gb|EDQ68938.1| predicted protein [Physcomitrella patens subsp. patens] Length = 225 Score = 187 bits (475), Expect = 4e-46, Method: Composition-based stats. Identities = 115/161 (71%), Positives = 129/161 (80%), Gaps = 1/161 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 + +V+ LFL E L L+YFF+ K TINYPFEKG SPRFRGEHALRRYP GEER Sbjct: 66 VLDHSVNTLFLSEMARGMGLALKYFFEKKVTINYPFEKGPLSPRFRGEHALRRYPTGEER 125 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEA+CPAQAITIE+ R DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGP Sbjct: 126 CIACKLCEAVCPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 184 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 NFEF TET +EL YDKE+LL NGDRWE+EI N+ ++S YR Sbjct: 185 NFEFTTETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 225 >gi|330994062|ref|ZP_08317992.1| NADH-quinone oxidoreductase subunit I [Gluconacetobacter sp. SXCC-1] gi|329759008|gb|EGG75522.1| NADH-quinone oxidoreductase subunit I [Gluconacetobacter sp. SXCC-1] Length = 162 Score = 187 bits (475), Expect = 4e-46, Method: Composition-based stats. Identities = 111/163 (68%), Positives = 127/163 (77%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + L E V + L+ FFK K TINYP+EKG SPRFRGEHALRRYPNGE Sbjct: 1 MGTLSKAARSMLLSELVAGMGVTLKAFFKPKATINYPYEKGVLSPRFRGEHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA CPA+AITIE+ PR G+RRT RYDIDM KCIYCGLC+EACPVDAIVE Sbjct: 61 ERCIACKLCEATCPAEAITIEAEPRDD-GSRRTTRYDIDMTKCIYCGLCEEACPVDAIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPN+EFATETR+EL Y+K++LL NGDRWES + R + D+PYR Sbjct: 120 GPNYEFATETREELMYNKDKLLANGDRWESVLARRLELDAPYR 162 >gi|121702465|ref|XP_001269497.1| NADH-quinone oxidoreductase, 23 kDa subunit, putative [Aspergillus clavatus NRRL 1] gi|119397640|gb|EAW08071.1| NADH-quinone oxidoreductase, 23 kDa subunit, putative [Aspergillus clavatus NRRL 1] Length = 228 Score = 187 bits (475), Expect = 4e-46, Method: Composition-based stats. Identities = 102/160 (63%), Positives = 118/160 (73%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + + E ++ + FF+ TI YPFEKG SPRFRGEHALRRYP GEERC Sbjct: 70 LDKASKYFLMAELFRGMYVVMEQFFRPPYTIFYPFEKGPISPRFRGEHALRRYPTGEERC 129 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAITIE+ R DG+RRT RYDIDM KCIYCG CQE+CPVDAIVE N Sbjct: 130 IACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGYCQESCPVDAIVETSN 188 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ATETR+EL Y+KE+LL NGD+WE E+ I D+PYR Sbjct: 189 AEYATETREELLYNKEKLLANGDKWEPELAATIRADAPYR 228 >gi|288958981|ref|YP_003449322.1| NADH dehydrogenase I chain I [Azospirillum sp. B510] gi|288911289|dbj|BAI72778.1| NADH dehydrogenase I chain I [Azospirillum sp. B510] Length = 162 Score = 187 bits (475), Expect = 4e-46, Method: Composition-based stats. Identities = 108/163 (66%), Positives = 125/163 (76%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M LFL E V L RY FK K TINYP+EKG S RFRGEH LRRY +GE Sbjct: 1 MAFLDRAARSLFLTELVCGMALTFRYMFKPKVTINYPYEKGPISSRFRGEHVLRRYASGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIE+ PR G+RRT RYDIDM KCIYCGLCQEACPVDA+V Sbjct: 61 ERCIACKLCEAVCPALAITIEAEPRDD-GSRRTTRYDIDMTKCIYCGLCQEACPVDAVVM 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEF+TE R+EL+Y+K++LL NGDRWE+EI +N+ ++PYR Sbjct: 120 GPNFEFSTENREELFYNKQKLLANGDRWEAEIAQNLAAEAPYR 162 >gi|17944955|gb|AAL48541.1| RE02647p [Drosophila melanogaster] Length = 217 Score = 187 bits (475), Expect = 4e-46, Method: Composition-based stats. Identities = 110/161 (68%), Positives = 123/161 (76%), Gaps = 1/161 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 I S +F E + F + L + FK TINYPFEKG SPRFRGEHALRRYP+GEER Sbjct: 58 ITDRAASTMFFGELLRGFAVTLAHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEER 117 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEAICPAQAITIE+ R G+RRT RYDIDM KCIYCG CQEACPV AIVEGP Sbjct: 118 CIACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQEACPVGAIVEGP 176 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 NFEF+TET +EL Y+KE+LL NGD+WESEI N+ D YR Sbjct: 177 NFEFSTETHEELLYNKEKLLCNGDKWESEIASNLQADHLYR 217 >gi|294083719|ref|YP_003550476.1| NADH-quinone oxidoreductase subunit I [Candidatus Puniceispirillum marinum IMCC1322] gi|292663291|gb|ADE38392.1| NADH-quinone oxidoreductase, chain I [Candidatus Puniceispirillum marinum IMCC1322] Length = 162 Score = 187 bits (475), Expect = 5e-46, Method: Composition-based stats. Identities = 119/163 (73%), Positives = 133/163 (81%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 MR+ ++ L E FL L+YFFK K TINYP+EKGS SPRFRGEHALRRYPNGE Sbjct: 1 MRMLMDSIKSFLLLELAKGMFLTLKYFFKPKVTINYPYEKGSLSPRFRGEHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPAQAITIE+ PR G+RRT RYDIDM KCIYCG CQEACPVDAIVE Sbjct: 61 ERCIACKLCEAVCPAQAITIEAEPRDD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEFATETR+ELYYDK +LL NGDRWE+EI RN+ D+ +R Sbjct: 120 GPNFEFATETREELYYDKNKLLANGDRWETEIARNLAADAEWR 162 >gi|163843083|ref|YP_001627487.1| NADH dehydrogenase subunit I [Brucella suis ATCC 23445] gi|189030925|sp|B0CLD7|NUOI_BRUSI RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|163673806|gb|ABY37917.1| NADH-quinone oxidoreductase, chain I [Brucella suis ATCC 23445] Length = 163 Score = 187 bits (474), Expect = 5e-46, Method: Composition-based stats. Identities = 126/163 (77%), Positives = 135/163 (82%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M L LKEF AF L +R FF K T+NYP EKG SPRFRGEHALRRYPNGE Sbjct: 1 MASITQAAKSLLLKEFASAFALSMRQFFAPKATLNYPHEKGPVSPRFRGEHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVE Sbjct: 61 ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 120 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEFATETR+ELYYDK++LL NGDRWE EI RNI D+PYR Sbjct: 121 GPNFEFATETREELYYDKDKLLANGDRWELEIARNIAMDAPYR 163 >gi|75676070|ref|YP_318491.1| NADH dehydrogenase subunit I [Nitrobacter winogradskyi Nb-255] gi|115502535|sp|Q3SRF2|NUOI_NITWN RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|74420940|gb|ABA05139.1| NADH dehydrogenase subunit I [Nitrobacter winogradskyi Nb-255] Length = 162 Score = 187 bits (474), Expect = 5e-46, Method: Composition-based stats. Identities = 126/162 (77%), Positives = 136/162 (83%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 L L EF+ AFFL +RYFFK K TINYPFEK SPRFRGEHALRRYPNGEE Sbjct: 1 MSINATARSLLLTEFISAFFLTMRYFFKPKPTINYPFEKNPISPRFRGEHALRRYPNGEE 60 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLCEA+CPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCGLCQEACPVDAIVEG Sbjct: 61 RCIACKLCEAVCPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGLCQEACPVDAIVEG 120 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 PNFEFATETR+ELYYDK +LL NGDRWE EI + I D+PYR Sbjct: 121 PNFEFATETREELYYDKAKLLANGDRWEREIAKAIELDAPYR 162 >gi|327291045|ref|XP_003230232.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial-like [Anolis carolinensis] Length = 208 Score = 187 bits (474), Expect = 5e-46, Method: Composition-based stats. Identities = 110/162 (67%), Positives = 123/162 (75%), Gaps = 1/162 (0%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 I L E + + + Y F+ TINYPFEKG SPRFRGEHALRRYP+GEE Sbjct: 48 SITDKAAQTLLWTELIRGLAMTMSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSGEE 107 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLCEAICPAQAITIE+ PR G+RRT RYDIDM KCIYCG CQEACPVDAIVEG Sbjct: 108 RCIACKLCEAICPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 166 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 PNFEF+TET +EL Y+KE+LLNNGD+WE+EI NI D YR Sbjct: 167 PNFEFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADYLYR 208 >gi|17864306|ref|NP_524719.1| NADH:ubiquinone reductase 23kD subunit precursor [Drosophila melanogaster] gi|7300064|gb|AAF55234.1| NADH:ubiquinone reductase 23kD subunit precursor [Drosophila melanogaster] gi|16768338|gb|AAL28388.1| GM02062p [Drosophila melanogaster] gi|220942892|gb|ACL83989.1| ND23-PA [synthetic construct] gi|220953000|gb|ACL89043.1| ND23-PA [synthetic construct] Length = 217 Score = 187 bits (474), Expect = 5e-46, Method: Composition-based stats. Identities = 111/161 (68%), Positives = 124/161 (77%), Gaps = 1/161 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 I S +F E + F + L + FK TINYPFEKG SPRFRGEHALRRYP+GEER Sbjct: 58 ITDRAASTMFFGELLRGFAVTLAHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEER 117 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEAICPAQAITIE+ R G+RRT RYDIDM KCIYCG CQEACPVDAIVEGP Sbjct: 118 CIACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 176 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 NFEF+TET +EL Y+KE+LL NGD+WESEI N+ D YR Sbjct: 177 NFEFSTETHEELLYNKEKLLCNGDKWESEIASNLQADHLYR 217 >gi|328543695|ref|YP_004303804.1| NADH-quinone oxidoreductase subunit I [polymorphum gilvum SL003B-26A1] gi|326413439|gb|ADZ70502.1| NADH-quinone oxidoreductase subunit I [Polymorphum gilvum SL003B-26A1] Length = 162 Score = 187 bits (474), Expect = 6e-46, Method: Composition-based stats. Identities = 130/160 (81%), Positives = 138/160 (86%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 LFLKEFV AFFL +RYFFK K T+NYPFEKG SPRFRGEHALRRYPNGEERC Sbjct: 3 LDQAAKSLFLKEFVSAFFLAMRYFFKPKPTLNYPFEKGPVSPRFRGEHALRRYPNGEERC 62 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAITIE+GPR +DGTRRT RYDIDM+KCIYCG CQEACPVDAIVEGPN Sbjct: 63 IACKLCEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGFCQEACPVDAIVEGPN 122 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FEFATETR+ELYY KE+LL NGDRWE EI RNI D+PYR Sbjct: 123 FEFATETREELYYSKEKLLANGDRWEREIARNIEMDAPYR 162 >gi|209964542|ref|YP_002297457.1| NADH dehydrogenase subunit I [Rhodospirillum centenum SW] gi|226737410|sp|B6ISX3|NUOI_RHOCS RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|209958008|gb|ACI98644.1| NADH-quinone oxidoreductase chain I [Rhodospirillum centenum SW] Length = 162 Score = 187 bits (474), Expect = 6e-46, Method: Composition-based stats. Identities = 112/163 (68%), Positives = 125/163 (76%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M LFL E V L Y F+ + TINYP+E+ SPRFRGEHALRRYPNGE Sbjct: 1 MVKLDRAARGLFLAELVRGLSLTFSYMFRPRATINYPYERSPMSPRFRGEHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIE+ PR DG+RRT RYDIDM KCIYCGLCQEACPVDAIVE Sbjct: 61 ERCIACKLCEAVCPALAITIEAEPR-EDGSRRTTRYDIDMTKCIYCGLCQEACPVDAIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPN EFA ETR+EL+Y+KE+LL NGDRWE+ I NI D+PYR Sbjct: 120 GPNLEFAAETREELFYNKEKLLANGDRWEALIAANIAADAPYR 162 >gi|195328615|ref|XP_002031010.1| GM25751 [Drosophila sechellia] gi|194119953|gb|EDW41996.1| GM25751 [Drosophila sechellia] Length = 217 Score = 186 bits (473), Expect = 6e-46, Method: Composition-based stats. Identities = 111/161 (68%), Positives = 123/161 (76%), Gaps = 1/161 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 I S +F E F + L + FK TINYPFEKG SPRFRGEHALRRYP+GEER Sbjct: 58 ITDRAASTMFFGELFRGFAVTLAHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEER 117 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEAICPAQAITIE+ R G+RRT RYDIDM KCIYCG CQEACPVDAIVEGP Sbjct: 118 CIACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 176 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 NFEF+TET +EL Y+KE+LL NGD+WESEI N+ D YR Sbjct: 177 NFEFSTETHEELLYNKEKLLCNGDKWESEIASNLQADHLYR 217 >gi|54261777|ref|NP_998304.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial [Danio rerio] gi|37194660|gb|AAH58299.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, (NADH-coenzyme Q reductase) [Danio rerio] gi|41107574|gb|AAH65459.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, (NADH-coenzyme Q reductase) [Danio rerio] gi|220678768|emb|CAX13299.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, (NADH-coenzyme Q reductase) [Danio rerio] Length = 210 Score = 186 bits (473), Expect = 6e-46, Method: Composition-based stats. Identities = 111/162 (68%), Positives = 124/162 (76%), Gaps = 1/162 (0%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 I L L E + + + Y F+ TINYPFEKG SPRFRGEHALRRYP+GEE Sbjct: 50 SITDRAAQTLLLTELIRGMGMAVSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSGEE 109 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLCEAICPAQAITIE+ PR G+RRT RYDIDM KCIYCG CQEACPVDAIVEG Sbjct: 110 RCIACKLCEAICPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 168 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 PNFEF+TET +EL Y+KE+LLNNGD+WE+EI NI D YR Sbjct: 169 PNFEFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADFLYR 210 >gi|254460189|ref|ZP_05073605.1| NADH-ubiquinone oxidoreductase (complex i) subunit [Rhodobacterales bacterium HTCC2083] gi|206676778|gb|EDZ41265.1| NADH-ubiquinone oxidoreductase (complex i) subunit [Rhodobacteraceae bacterium HTCC2083] Length = 164 Score = 186 bits (473), Expect = 7e-46, Method: Composition-based stats. Identities = 114/158 (72%), Positives = 129/158 (81%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 + L +FV F L LRY F K T+NYP EKG SPRFRGEHALRRYPNGEERCIA Sbjct: 8 RAAKYFLLADFVKGFGLGLRYMFAPKVTLNYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEA+CPAQAITI++ PR G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE Sbjct: 68 CKLCEAVCPAQAITIDAEPRDD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FATETR+EL+YDK++LL NGDRWE++I RN+ D+PYR Sbjct: 127 FATETREELFYDKDKLLENGDRWEAQIARNLEIDAPYR 164 >gi|225713986|gb|ACO12839.1| NADH dehydrogenase iron-sulfur protein 8, mitochondrial precursor [Lepeophtheirus salmonis] Length = 203 Score = 186 bits (473), Expect = 7e-46, Method: Composition-based stats. Identities = 109/159 (68%), Positives = 120/159 (75%), Gaps = 1/159 (0%) Query: 5 RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64 +F E + L + K TINYPFEKG SPRFRGEHALRRYP+GEERCI Sbjct: 46 ERAAHHIFWTELFRGLLVTLGHMLKEPATINYPFEKGPLSPRFRGEHALRRYPSGEERCI 105 Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 ACKLCEAICPAQAITIE+ R G RRT RYDIDM KCIYCGLCQEACPVDAIVEGPNF Sbjct: 106 ACKLCEAICPAQAITIEAEERSD-GARRTTRYDIDMTKCIYCGLCQEACPVDAIVEGPNF 164 Query: 125 EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 EF+TET +EL Y+KE+LLNNGD+WE+EI NI D YR Sbjct: 165 EFSTETHEELLYNKEKLLNNGDKWEAEIAANIEADYLYR 203 >gi|74149244|dbj|BAE22408.1| unnamed protein product [Mus musculus] Length = 212 Score = 186 bits (473), Expect = 8e-46, Method: Composition-based stats. Identities = 109/159 (68%), Positives = 122/159 (76%), Gaps = 1/159 (0%) Query: 5 RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64 L E + + L Y F+ TINYPFEKG SPRFRGEHALRRYP+GEERCI Sbjct: 55 DNAARILMWTELIRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSGEERCI 114 Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 ACKLCEAICPAQAITIE+ PR G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNF Sbjct: 115 ACKLCEAICPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNF 173 Query: 125 EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 EF+TET +EL Y+KE+LLNNGD+WE++I NI D YR Sbjct: 174 EFSTETHEELLYNKEKLLNNGDKWEAKIAANIQADYLYR 212 >gi|195570536|ref|XP_002103263.1| GD20325 [Drosophila simulans] gi|194199190|gb|EDX12766.1| GD20325 [Drosophila simulans] Length = 217 Score = 186 bits (473), Expect = 8e-46, Method: Composition-based stats. Identities = 111/161 (68%), Positives = 123/161 (76%), Gaps = 1/161 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 I S +F E F + L + FK TINYPFEKG SPRFRGEHALRRYP+GEER Sbjct: 58 ITDRAASTMFFGELFRGFAVTLAHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEER 117 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEAICPAQAITIE+ R G+RRT RYDIDM KCIYCG CQEACPVDAIVEGP Sbjct: 118 CIACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 176 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 NFEF+TET +EL Y+KE+LL NGD+WESEI N+ D YR Sbjct: 177 NFEFSTETHEELLYNKEKLLCNGDKWESEIASNLQADHLYR 217 >gi|194901136|ref|XP_001980108.1| GG20344 [Drosophila erecta] gi|195501171|ref|XP_002097689.1| GE26357 [Drosophila yakuba] gi|190651811|gb|EDV49066.1| GG20344 [Drosophila erecta] gi|194183790|gb|EDW97401.1| GE26357 [Drosophila yakuba] Length = 217 Score = 186 bits (472), Expect = 8e-46, Method: Composition-based stats. Identities = 111/161 (68%), Positives = 123/161 (76%), Gaps = 1/161 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 I S +F E F + L + FK TINYPFEKG SPRFRGEHALRRYP+GEER Sbjct: 58 ITDRAASTMFFGELFRGFAVTLAHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEER 117 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEAICPAQAITIE+ R G+RRT RYDIDM KCIYCG CQEACPVDAIVEGP Sbjct: 118 CIACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 176 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 NFEF+TET +EL Y+KE+LL NGD+WESEI N+ D YR Sbjct: 177 NFEFSTETHEELLYNKEKLLCNGDKWESEIASNLQADHLYR 217 >gi|258542714|ref|YP_003188147.1| NADH dehydrogenase subunit I [Acetobacter pasteurianus IFO 3283-01] gi|256633792|dbj|BAH99767.1| NADH-quinone oxidoreductase chain I [Acetobacter pasteurianus IFO 3283-01] gi|256636851|dbj|BAI02820.1| NADH-quinone oxidoreductase chain I [Acetobacter pasteurianus IFO 3283-03] gi|256639904|dbj|BAI05866.1| NADH-quinone oxidoreductase chain I [Acetobacter pasteurianus IFO 3283-07] gi|256642960|dbj|BAI08915.1| NADH-quinone oxidoreductase chain I [Acetobacter pasteurianus IFO 3283-22] gi|256646015|dbj|BAI11963.1| NADH-quinone oxidoreductase chain I [Acetobacter pasteurianus IFO 3283-26] gi|256649068|dbj|BAI15009.1| NADH-quinone oxidoreductase chain I [Acetobacter pasteurianus IFO 3283-32] gi|256652055|dbj|BAI17989.1| NADH-quinone oxidoreductase chain I [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655112|dbj|BAI21039.1| NADH-quinone oxidoreductase chain I [Acetobacter pasteurianus IFO 3283-12] Length = 162 Score = 186 bits (472), Expect = 9e-46, Method: Composition-based stats. Identities = 109/163 (66%), Positives = 125/163 (76%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + LKE VG R F+ K T+NYP+EKG SPRFRGEHALRRYPNGE Sbjct: 1 MSALGNTLRSFLLKELVGGMSSTFRMMFRPKVTLNYPYEKGPLSPRFRGEHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA CPA+AITIE+ R G+RRT RYDIDM KCIYCGLC+EACPVDAIVE Sbjct: 61 ERCIACKLCEATCPAEAITIEAEERDD-GSRRTTRYDIDMTKCIYCGLCEEACPVDAIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPN+EFATETR+EL YDK++LL NGDRWE+ + R + D+PYR Sbjct: 120 GPNYEFATETREELMYDKDKLLANGDRWEALLARRLELDAPYR 162 >gi|302803981|ref|XP_002983743.1| hypothetical protein SELMODRAFT_422906 [Selaginella moellendorffii] gi|302817680|ref|XP_002990515.1| hypothetical protein SELMODRAFT_428992 [Selaginella moellendorffii] gi|300141683|gb|EFJ08392.1| hypothetical protein SELMODRAFT_428992 [Selaginella moellendorffii] gi|300148580|gb|EFJ15239.1| hypothetical protein SELMODRAFT_422906 [Selaginella moellendorffii] Length = 215 Score = 186 bits (472), Expect = 9e-46, Method: Composition-based stats. Identities = 116/162 (71%), Positives = 128/162 (79%), Gaps = 1/162 (0%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 ++ +FL E V L L+YFF+ K TINYPFEKG SPRFRGEHALRRYP GEE Sbjct: 55 QVLDKTGDTMFLAECVRGLMLTLKYFFEPKVTINYPFEKGPLSPRFRGEHALRRYPTGEE 114 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLCEA+CPAQAITIE+ R DG+RRT RYDIDM KCIYCG CQEACPVDAIVEG Sbjct: 115 RCIACKLCEAVCPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 173 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 PNFEFATET +EL YDKE+LL NGDRWE+EI N+ DS YR Sbjct: 174 PNFEFATETHEELLYDKEKLLENGDRWETEIAENLRADSLYR 215 >gi|17987433|ref|NP_540067.1| NADH dehydrogenase subunit I [Brucella melitensis bv. 1 str. 16M] gi|256044489|ref|ZP_05447393.1| NADH dehydrogenase subunit I [Brucella melitensis bv. 1 str. Rev.1] gi|260563843|ref|ZP_05834329.1| NADH-quinone oxidoreductase subunit I [Brucella melitensis bv. 1 str. 16M] gi|265990913|ref|ZP_06103470.1| NADH-quinone oxidoreductase subunit I [Brucella melitensis bv. 1 str. Rev.1] gi|81851731|sp|Q8YGK8|NUOI_BRUME RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|17983125|gb|AAL52331.1| NADH-quinone oxidoreductase chain i [Brucella melitensis bv. 1 str. 16M] gi|260153859|gb|EEW88951.1| NADH-quinone oxidoreductase subunit I [Brucella melitensis bv. 1 str. 16M] gi|263001697|gb|EEZ14272.1| NADH-quinone oxidoreductase subunit I [Brucella melitensis bv. 1 str. Rev.1] Length = 163 Score = 186 bits (472), Expect = 1e-45, Method: Composition-based stats. Identities = 125/163 (76%), Positives = 134/163 (82%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M L LKEF AF L +R FF K T+NYP EKG SPRFRGEHALRRYPNGE Sbjct: 1 MASIAQAAKSLLLKEFASAFALSMRQFFAPKATLNYPHEKGPVSPRFRGEHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVE Sbjct: 61 ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVE 120 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEFATETR+ELYYDK++LL NGD WE EI RNI D+PYR Sbjct: 121 GPNFEFATETREELYYDKDKLLANGDHWEREIARNIAMDAPYR 163 >gi|115751579|ref|XP_792622.2| PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase), partial [Strongylocentrotus purpuratus] gi|115932140|ref|XP_001191284.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase), partial [Strongylocentrotus purpuratus] Length = 195 Score = 186 bits (471), Expect = 1e-45, Method: Composition-based stats. Identities = 112/161 (69%), Positives = 124/161 (77%), Gaps = 1/161 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 I S LF E + L Y F+ TINYPFEKG SPRFRGEHALRRYP+GEER Sbjct: 36 ITDRAASTLFFTELTRGLAMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSGEER 95 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEA+CPAQAITIE+ PR G+RRT RYDIDM KCIYCG CQEACPVDAIVEGP Sbjct: 96 CIACKLCEAVCPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 154 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 NFEF+TET +EL Y+KE+LLNNGD+WE+EI NI D YR Sbjct: 155 NFEFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADHLYR 195 >gi|92117735|ref|YP_577464.1| NADH dehydrogenase subunit I [Nitrobacter hamburgensis X14] gi|123265191|sp|Q1QL93|NUOI_NITHX RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|91800629|gb|ABE63004.1| NADH dehydrogenase subunit I [Nitrobacter hamburgensis X14] Length = 162 Score = 186 bits (471), Expect = 1e-45, Method: Composition-based stats. Identities = 127/162 (78%), Positives = 136/162 (83%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 L L EFV AFFL +RYFF+ K TINYPFEK SPRFRGEHALRRYPNGEE Sbjct: 1 MSINATARALLLTEFVSAFFLTMRYFFQPKATINYPFEKNPISPRFRGEHALRRYPNGEE 60 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCGLCQEACPVDAIVEG Sbjct: 61 RCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGLCQEACPVDAIVEG 120 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 PNFEFATETR+ELYYDK +LL NGDRWE EI + I D+PYR Sbjct: 121 PNFEFATETREELYYDKAKLLANGDRWEREIAKAIELDAPYR 162 >gi|262277293|ref|ZP_06055086.1| NADH-quinone oxidoreductase subunit i [alpha proteobacterium HIMB114] gi|262224396|gb|EEY74855.1| NADH-quinone oxidoreductase subunit i [alpha proteobacterium HIMB114] Length = 161 Score = 186 bits (471), Expect = 1e-45, Method: Composition-based stats. Identities = 118/163 (72%), Positives = 133/163 (81%), Gaps = 2/163 (1%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M+ F + +FL EFV +L +++ FK K T+NYPFEKG SPRFRGEHALRRYPNGE Sbjct: 1 MK-FNRLLKTIFLSEFVKGLYLAIKFMFKPKATVNYPFEKGPISPRFRGEHALRRYPNGE 59 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA CPAQAITIES P+ G+R+T RYDIDM+KCIYCGLCQEACPVDAIV+ Sbjct: 60 ERCIACKLCEAACPAQAITIESEPKDD-GSRKTTRYDIDMVKCIYCGLCQEACPVDAIVQ 118 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEF TETR+ELYY KE+LL NGDRWESEI NI D PYR Sbjct: 119 GPNFEFTTETREELYYTKEKLLENGDRWESEIANNIKLDKPYR 161 >gi|146278034|ref|YP_001168193.1| NADH dehydrogenase subunit I [Rhodobacter sphaeroides ATCC 17025] gi|145556275|gb|ABP70888.1| NADH-quinone oxidoreductase, chain I [Rhodobacter sphaeroides ATCC 17025] Length = 167 Score = 186 bits (471), Expect = 1e-45, Method: Composition-based stats. Identities = 113/158 (71%), Positives = 130/158 (82%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 V + L +F+ F L ++YFF K T+NYP EKG SPRFRGEHALRRYPNGEERCIA Sbjct: 11 RAVKYFLLLDFIKGFGLGMKYFFAPKHTLNYPHEKGPLSPRFRGEHALRRYPNGEERCIA 70 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEA+CPAQAITI++ PR DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE Sbjct: 71 CKLCEAVCPAQAITIDAEPR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 129 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 F+ ETR+EL+Y KE+LL NGDRWE+EI RN+ D+PYR Sbjct: 130 FSVETREELFYTKEKLLQNGDRWEAEIARNLELDAPYR 167 >gi|90423913|ref|YP_532283.1| NADH dehydrogenase subunit I [Rhodopseudomonas palustris BisB18] gi|115502509|sp|Q215H2|NUOI1_RHOPB RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName: Full=NADH dehydrogenase I subunit I 1; AltName: Full=NDH-1 subunit I 1 gi|90105927|gb|ABD87964.1| NADH-quinone oxidoreductase, chain I [Rhodopseudomonas palustris BisB18] Length = 162 Score = 186 bits (471), Expect = 1e-45, Method: Composition-based stats. Identities = 127/157 (80%), Positives = 137/157 (87%) Query: 7 NVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIAC 66 L L EFV AFFL +RYFFK K TINYPFEK SPRFRGEHALRRYPNGEERCIAC Sbjct: 6 AARSLLLTEFVSAFFLAMRYFFKPKPTINYPFEKNPISPRFRGEHALRRYPNGEERCIAC 65 Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 KLCEA+CPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCGLCQEACPVDAIVEGPNFEF Sbjct: 66 KLCEAVCPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGLCQEACPVDAIVEGPNFEF 125 Query: 127 ATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 ATETR+ELYYDK +LL NGDRWE EI ++I D+PYR Sbjct: 126 ATETREELYYDKAKLLANGDRWEREIAKSIELDAPYR 162 >gi|116178838|ref|XP_001219268.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Chaetomium globosum CBS 148.51] gi|88184344|gb|EAQ91812.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Chaetomium globosum CBS 148.51] Length = 223 Score = 186 bits (471), Expect = 1e-45, Method: Composition-based stats. Identities = 103/162 (63%), Positives = 121/162 (74%), Gaps = 1/162 (0%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 F + L E ++ + FF+ TI YPFEKG SPRFRGEHALRRYP+GEE Sbjct: 63 STFDKVGKYFLLTEMFRGMYILMEQFFRPPYTIYYPFEKGPISPRFRGEHALRRYPSGEE 122 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLCEA+CPAQAITIE+ R G+RRT RYDIDM KCIYCG CQE+CPVDAIVE Sbjct: 123 RCIACKLCEAVCPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQESCPVDAIVES 181 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 PN E+ATETR+EL Y+KE+LL+NGD+WE E+ I D+PYR Sbjct: 182 PNAEYATETREELLYNKEKLLSNGDKWEPELAAAIRADAPYR 223 >gi|331231867|ref|XP_003328596.1| NADH-ubiquinone oxidoreductase subunit [Puccinia graminis f. sp. tritici CRL 75-36-700-3] gi|309307586|gb|EFP84177.1| NADH-ubiquinone oxidoreductase subunit [Puccinia graminis f. sp. tritici CRL 75-36-700-3] Length = 259 Score = 186 bits (471), Expect = 1e-45, Method: Composition-based stats. Identities = 104/160 (65%), Positives = 115/160 (71%), Gaps = 2/160 (1%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 FL E ++ L F+ TI PFEKG SPRFRGEHALRRY +GEERC Sbjct: 102 LDKAAKLFFLTEIARGMWVVLGQMFRPPYTI-IPFEKGPVSPRFRGEHALRRYASGEERC 160 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAITIES R DG+RRT RYDIDM KCIYCG CQEACPVDAIVE N Sbjct: 161 IACKLCEAICPAQAITIESETR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVESQN 219 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E++TETR+EL Y+KE+LL NGDR ESEI N+ D YR Sbjct: 220 TEYSTETREELLYNKEKLLANGDRMESEIAANLHADHVYR 259 >gi|296415821|ref|XP_002837584.1| hypothetical protein [Tuber melanosporum Mel28] gi|295633457|emb|CAZ81775.1| unnamed protein product [Tuber melanosporum] Length = 232 Score = 185 bits (470), Expect = 1e-45, Method: Composition-based stats. Identities = 104/160 (65%), Positives = 121/160 (75%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + E + ++ L FF+A TI YPFEKG SPRFRGEHALRRYP+GEERC Sbjct: 74 LDKAGRIFLMTEMLRGMYVVLEQFFRAPYTIMYPFEKGPISPRFRGEHALRRYPSGEERC 133 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPA AITIE+ R DG+RRT RYDIDM KCIYCG CQE+CPVDAIVE PN Sbjct: 134 IACKLCEAICPALAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQESCPVDAIVESPN 192 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ATETR+EL Y+KE+LL+NGD+WE E+ I D+PYR Sbjct: 193 AEYATETREELLYNKEKLLSNGDKWEPELAAVIRADAPYR 232 >gi|1171862|sp|P42028|NDUS8_BOVIN RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial; AltName: Full=Complex I-23kD; Short=CI-23kD; AltName: Full=NADH-ubiquinone oxidoreductase 23 kDa subunit; AltName: Full=TYKY subunit; Flags: Precursor gi|163418|gb|AAA30664.1| NADH dehydrogenase (ubiquinone) [Bos taurus] gi|296471574|gb|DAA13689.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial precursor [Bos taurus] Length = 212 Score = 185 bits (470), Expect = 1e-45, Method: Composition-based stats. Identities = 110/164 (67%), Positives = 125/164 (76%), Gaps = 2/164 (1%) Query: 1 MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59 M+ + L E + + L Y F+ TINYPFEKG SPRFRGEHALRRYP+G Sbjct: 50 MKSVTDRAAQTLLWTELIRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 109 Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 EERCIACKLCEA+CPAQAITIE+ PR G+RRT RYDIDM KCIYCG CQEACPVDAIV Sbjct: 110 EERCIACKLCEAVCPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 168 Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 EGPNFEF+TET +EL Y+KE+LLNNGD+WE+EI NI D YR Sbjct: 169 EGPNFEFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADYLYR 212 >gi|209735168|gb|ACI68453.1| NADH dehydrogenase iron-sulfur protein 8, mitochondrial precursor [Salmo salar] Length = 210 Score = 185 bits (470), Expect = 1e-45, Method: Composition-based stats. Identities = 113/164 (68%), Positives = 123/164 (75%), Gaps = 2/164 (1%) Query: 1 MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59 MR I L E + + Y F+ TINYPFEKG SPRFRGEHALRRYPNG Sbjct: 48 MRSITDRAAQTLLWTELFRGLGMTMSYLFREPATINYPFEKGPLSPRFRGEHALRRYPNG 107 Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 EERCIACKLCEA+CPAQAITIE+ R G+RRT RYDIDM KCIYCG CQEACPVDAIV Sbjct: 108 EERCIACKLCEAVCPAQAITIEAETRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 166 Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 EGPNFEFATET +EL Y+KE+LLNNGD+WESEI NI D YR Sbjct: 167 EGPNFEFATETHEELLYNKEKLLNNGDQWESEIAANIQADYLYR 210 >gi|288856257|ref|NP_001165784.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial [Nasonia vitripennis] Length = 201 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 111/158 (70%), Positives = 126/158 (79%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 V+ +FL+E + L +FFK TINYPFEKG SPRFRGEHALRRYP+GEERCIA Sbjct: 45 RAVNTMFLQELFRGMGVALAHFFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIA 104 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEAICPAQAITIE+ R G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE Sbjct: 105 CKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 163 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 F+TET +E+ Y+KE+LLNNGD+WESEI N+ D YR Sbjct: 164 FSTETHEEMLYNKEKLLNNGDKWESEIASNLHADHLYR 201 >gi|311247108|ref|XP_003122483.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial-like isoform 2 [Sus scrofa] gi|311247128|ref|XP_003122489.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial-like isoform 2 [Sus scrofa] Length = 212 Score = 185 bits (470), Expect = 2e-45, Method: Composition-based stats. Identities = 111/164 (67%), Positives = 125/164 (76%), Gaps = 2/164 (1%) Query: 1 MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59 M+ + L E V + L Y F+ TINYPFEKG SPRFRGEHALRRYP+G Sbjct: 50 MKSVTDRAAQTLLWTELVRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 109 Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 EERCIACKLCEA+CPAQAITIE+ PR G+RRT RYDIDM KCIYCG CQEACPVDAIV Sbjct: 110 EERCIACKLCEAVCPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 168 Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 EGPNFEF+TET +EL Y+KE+LLNNGD+WE+EI NI D YR Sbjct: 169 EGPNFEFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADYLYR 212 >gi|148225889|ref|NP_001087331.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase) [Xenopus laevis] gi|51593201|gb|AAH78569.1| MGC85457 protein [Xenopus laevis] Length = 207 Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats. Identities = 109/162 (67%), Positives = 120/162 (74%), Gaps = 1/162 (0%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 + L E + L Y F+ TINYPFEKG SPRFRGEHALRRYP+GEE Sbjct: 47 SVTDRAAQTLLWTELFRGLGMTLSYMFREPATINYPFEKGPLSPRFRGEHALRRYPSGEE 106 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLCEA CPAQAITIE+ PR G+RRT RYDIDM KCIYCG CQEACPVDAIVEG Sbjct: 107 RCIACKLCEAACPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 165 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 PNFEF+TET +EL Y+KE+LLNNGD+WE EI NI D YR Sbjct: 166 PNFEFSTETHEELLYNKEKLLNNGDKWEVEIGANIQADFLYR 207 >gi|126736053|ref|ZP_01751797.1| NADH-quinone oxidoreductase chain I [Roseobacter sp. CCS2] gi|126714610|gb|EBA11477.1| NADH-quinone oxidoreductase chain I [Roseobacter sp. CCS2] Length = 167 Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats. Identities = 115/158 (72%), Positives = 130/158 (82%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 + L++F F L ++YFF K T+NYP EKG SPRFRGEHALRRYPNGEERCIA Sbjct: 11 RAAKYFLLQDFWKGFSLGMKYFFSPKATLNYPHEKGPLSPRFRGEHALRRYPNGEERCIA 70 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEA+CPAQAITI++ PR G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE Sbjct: 71 CKLCEAVCPAQAITIDAEPRDD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 129 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 F+TETR+ELYYDKE+LL NGDRWESEI RN+ D+PYR Sbjct: 130 FSTETREELYYDKEKLLENGDRWESEIARNLELDAPYR 167 >gi|195108159|ref|XP_001998660.1| GI24093 [Drosophila mojavensis] gi|193915254|gb|EDW14121.1| GI24093 [Drosophila mojavensis] Length = 216 Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats. Identities = 110/161 (68%), Positives = 123/161 (76%), Gaps = 1/161 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 I + +F E F + L + FK TINYPFEKG SPRFRGEHALRRYP+GEER Sbjct: 57 ITDRAATSMFFGELFRGFAVTLAHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEER 116 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEAICPAQAITIE+ R G+RRT RYDIDM KCIYCG CQEACPVDAIVEGP Sbjct: 117 CIACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 175 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 NFEF+TET +EL Y+KE+LL NGD+WESEI N+ D YR Sbjct: 176 NFEFSTETHEELLYNKEKLLCNGDKWESEIASNLQADHLYR 216 >gi|91977347|ref|YP_570006.1| NADH dehydrogenase subunit I [Rhodopseudomonas palustris BisB5] gi|123748991|sp|Q135Y4|NUOI2_RHOPS RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName: Full=NADH dehydrogenase I subunit I 2; AltName: Full=NDH-1 subunit I 2 gi|91683803|gb|ABE40105.1| NADH-quinone oxidoreductase, chain I [Rhodopseudomonas palustris BisB5] Length = 162 Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats. Identities = 128/160 (80%), Positives = 137/160 (85%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 L L EFV AFFL +RYFF+ K TINYPFEK SPRFRGEHALRRYPNGEERC Sbjct: 3 INATARSLLLTEFVSAFFLAMRYFFRPKPTINYPFEKNPISPRFRGEHALRRYPNGEERC 62 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCGLCQEACPVDAIVEGPN Sbjct: 63 IACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGLCQEACPVDAIVEGPN 122 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FEFATETR+ELYYDK RLL NGDRWE EI ++I D+PYR Sbjct: 123 FEFATETREELYYDKARLLANGDRWEREIAKSIELDAPYR 162 >gi|170742519|ref|YP_001771174.1| NADH dehydrogenase subunit I [Methylobacterium sp. 4-46] gi|226737402|sp|B0ULL2|NUOI_METS4 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|168196793|gb|ACA18740.1| NADH-quinone oxidoreductase, chain I [Methylobacterium sp. 4-46] Length = 162 Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats. Identities = 125/163 (76%), Positives = 135/163 (82%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 MR L LKEFV F L +RY FK K TINYPFE G SPRFRGEHALRRYPNGE Sbjct: 1 MR-LDQVARSLLLKEFVSGFALAMRYLFKPKATINYPFEMGHRSPRFRGEHALRRYPNGE 59 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPAQAITIE+GPR +DGTRRT RYDIDM+KCIYCG+CQEACPVDAIVE Sbjct: 60 ERCIACKLCEAVCPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGMCQEACPVDAIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEF+ ETR+EL YDK+RLL NGDRWE EI RNI D+PYR Sbjct: 120 GPNFEFSVETREELLYDKQRLLANGDRWEREIARNIAADAPYR 162 >gi|220924013|ref|YP_002499315.1| NADH dehydrogenase subunit I [Methylobacterium nodulans ORS 2060] gi|254772594|sp|B8IUV4|NUOI_METNO RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|219948620|gb|ACL59012.1| NADH-quinone oxidoreductase, chain I [Methylobacterium nodulans ORS 2060] Length = 162 Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats. Identities = 125/163 (76%), Positives = 135/163 (82%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 MR L LKEFV F L +RY FK K TINYPFE G SPRFRGEHALRRYPNGE Sbjct: 1 MR-LDQVARSLLLKEFVSGFALAMRYLFKPKATINYPFEMGHRSPRFRGEHALRRYPNGE 59 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE+GPR +DGTRRT RYDIDM+KCIYCG+CQEACPVDAIVE Sbjct: 60 ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGMCQEACPVDAIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEF+ ETR+EL YDK++LL NGDRWE EI RNI D+PYR Sbjct: 120 GPNFEFSVETREELLYDKQKLLANGDRWEREIARNIAADAPYR 162 >gi|83311878|ref|YP_422142.1| NADH dehydrogenase subunit I [Magnetospirillum magneticum AMB-1] gi|115502533|sp|Q2W3J2|NUOI_MAGMM RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|82946719|dbj|BAE51583.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit [Magnetospirillum magneticum AMB-1] Length = 162 Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats. Identities = 113/163 (69%), Positives = 122/163 (74%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M L E V L LRY FK K TINYP+EKG S RFRGEHALRRYPNGE Sbjct: 1 MSFLDRTARAFLLTELVQGLALTLRYMFKPKVTINYPYEKGPLSVRFRGEHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE PR G+RR RYD+DM KCIYCGLCQEACPVDAIVE Sbjct: 61 ERCIACKLCEAICPAQAITIEPEPRDD-GSRRARRYDLDMTKCIYCGLCQEACPVDAIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFE+ATETR EL Y+K +LL NGDRWE+E+ I D+PYR Sbjct: 120 GPNFEYATETRAELMYNKSKLLANGDRWEAELAFRIAADAPYR 162 >gi|86749700|ref|YP_486196.1| NADH dehydrogenase subunit I [Rhodopseudomonas palustris HaA2] gi|115502514|sp|Q2IWX5|NUOI2_RHOP2 RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName: Full=NADH dehydrogenase I subunit I 2; AltName: Full=NDH-1 subunit I 2 gi|86572728|gb|ABD07285.1| NADH-quinone oxidoreductase, chain I [Rhodopseudomonas palustris HaA2] Length = 162 Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats. Identities = 129/160 (80%), Positives = 137/160 (85%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 L L EFV AFFL +RYFFK K TINYPFEK SPRFRGEHALRRYPNGEERC Sbjct: 3 INATARSLLLTEFVSAFFLAMRYFFKPKPTINYPFEKNPISPRFRGEHALRRYPNGEERC 62 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCGLCQEACPVDAIVEGPN Sbjct: 63 IACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGLCQEACPVDAIVEGPN 122 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FEFATETR+ELYYDK RLL NGDRWE EI ++I D+PYR Sbjct: 123 FEFATETREELYYDKARLLANGDRWEREIAKSIELDAPYR 162 >gi|209731956|gb|ACI66847.1| NADH dehydrogenase iron-sulfur protein 8, mitochondrial precursor [Salmo salar] Length = 210 Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats. Identities = 112/164 (68%), Positives = 121/164 (73%), Gaps = 2/164 (1%) Query: 1 MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59 MR I L E + Y + TINYPFEKG SPRFRGEHALRRYPNG Sbjct: 48 MRSITDRAAQTLLWTELFRGLGTTMSYLLREPATINYPFEKGPLSPRFRGEHALRRYPNG 107 Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 EERCIACKLCEA+CPAQAITIE+ R G+RRT RYDIDM KCIYCG CQEACPVDAIV Sbjct: 108 EERCIACKLCEAVCPAQAITIEAETRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 166 Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 EGPNFEFATET +EL Y+KE+LLNNGD+WESEI NI D YR Sbjct: 167 EGPNFEFATETHEELLYNKEKLLNNGDQWESEIAANIQADYLYR 210 >gi|85374152|ref|YP_458214.1| NADH dehydrogenase subunit I [Erythrobacter litoralis HTCC2594] gi|123409621|sp|Q2NA74|NUOI_ERYLH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|84787235|gb|ABC63417.1| NADH dehydrogenase I, I subunit [Erythrobacter litoralis HTCC2594] Length = 162 Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats. Identities = 115/163 (70%), Positives = 127/163 (77%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + L EF+ A L L+YFFK K TINYPFEK SPRFRGEHALRRYPNGE Sbjct: 1 MTTATQLLKSFTLWEFLKAHALTLKYFFKPKATINYPFEKNPLSPRFRGEHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPAQAITIES PR G+RRT RYDIDM KCIYCG CQEACPVDAIVE Sbjct: 61 ERCIACKLCEAVCPAQAITIESEPRDD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFE++TETR+EL YDK +LL NGD+WE I N+ D+PYR Sbjct: 120 GPNFEYSTETREELLYDKAKLLANGDKWERAIAANLEADAPYR 162 >gi|312116310|ref|YP_004013906.1| NADH-quinone oxidoreductase, chain I [Rhodomicrobium vannielii ATCC 17100] gi|311221439|gb|ADP72807.1| NADH-quinone oxidoreductase, chain I [Rhodomicrobium vannielii ATCC 17100] Length = 163 Score = 185 bits (469), Expect = 2e-45, Method: Composition-based stats. Identities = 120/163 (73%), Positives = 134/163 (82%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M F ++ L EF+ A +L ++YFF K TINYPFEK SPRFRGEHALRRYPNG Sbjct: 1 MGGFGQSLRSAVLGEFLVATWLAMKYFFGPKATINYPFEKNPLSPRFRGEHALRRYPNGM 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE+GPR +DGTRRT RYDIDM+KCIYCG CQEACPVDAIVE Sbjct: 61 ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGFCQEACPVDAIVE 120 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEFATETR+EL YDKE+LL NGDRWE + +NI D+PYR Sbjct: 121 GPNFEFATETREELLYDKEKLLANGDRWERILAKNIELDAPYR 163 >gi|27380020|ref|NP_771549.1| NADH dehydrogenase subunit I [Bradyrhizobium japonicum USDA 110] gi|81736780|sp|Q89KJ6|NUOI_BRAJA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|27353174|dbj|BAC50174.1| NADH ubiquinone oxidoreductase chain I [Bradyrhizobium japonicum USDA 110] Length = 168 Score = 184 bits (468), Expect = 2e-45, Method: Composition-based stats. Identities = 125/160 (78%), Positives = 137/160 (85%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 L L EFV AFFL +RYFF+ K T+NYPFEKG SPRFRGEHALRRYPNGEERC Sbjct: 9 INATARSLLLSEFVSAFFLAMRYFFQPKPTLNYPFEKGPISPRFRGEHALRRYPNGEERC 68 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEA+CPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCGLCQEACPVDAIVEGPN Sbjct: 69 IACKLCEAVCPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGLCQEACPVDAIVEGPN 128 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FEFATETR+EL+YDK +LL NGDRWE EI + I D+PYR Sbjct: 129 FEFATETREELFYDKAKLLANGDRWEREIAKAIELDAPYR 168 >gi|321460435|gb|EFX71477.1| hypothetical protein DAPPUDRAFT_93364 [Daphnia pulex] Length = 183 Score = 184 bits (468), Expect = 2e-45, Method: Composition-based stats. Identities = 112/161 (69%), Positives = 125/161 (77%), Gaps = 1/161 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 I L L E F + L +FFK TINYPFEKG SPRFRGEHALRRYP+GEER Sbjct: 24 IVDRAGDHLLLTEIFRGFGVTLAHFFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEER 83 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEAICPAQAITIE+ PR G+RRT RYDIDM KCIYCG CQEACPVDAIVEGP Sbjct: 84 CIACKLCEAICPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 142 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 NFEF+TET +EL Y+KE+LLNNGD+WE+EI ++ D YR Sbjct: 143 NFEFSTETHEELMYNKEKLLNNGDKWEAEIAASLQADHLYR 183 >gi|56697608|ref|YP_167977.1| NADH dehydrogenase subunit I [Ruegeria pomeroyi DSS-3] gi|81676166|sp|Q5LPS9|NUOI_SILPO RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|56679345|gb|AAV96011.1| NADH dehydrogenase I, I subunit [Ruegeria pomeroyi DSS-3] Length = 164 Score = 184 bits (468), Expect = 2e-45, Method: Composition-based stats. Identities = 117/158 (74%), Positives = 131/158 (82%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 + L++F L L+YFF K TINYP EKG SPRFRGEHALRRYPNGEERCIA Sbjct: 8 RAAKYFLLQDFWVGMKLGLKYFFSPKATINYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEAICPAQAITI++ PR DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE Sbjct: 68 CKLCEAICPAQAITIDAEPR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FATETR+EL+YDKE+LL+NGDRWE+EI RN+ D+PYR Sbjct: 127 FATETREELFYDKEKLLSNGDRWEAEIARNLELDAPYR 164 >gi|311247106|ref|XP_003122482.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial-like isoform 1 [Sus scrofa] gi|311247126|ref|XP_003122488.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial-like isoform 1 [Sus scrofa] Length = 239 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 111/164 (67%), Positives = 125/164 (76%), Gaps = 2/164 (1%) Query: 1 MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59 M+ + L E V + L Y F+ TINYPFEKG SPRFRGEHALRRYP+G Sbjct: 77 MKSVTDRAAQTLLWTELVRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 136 Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 EERCIACKLCEA+CPAQAITIE+ PR G+RRT RYDIDM KCIYCG CQEACPVDAIV Sbjct: 137 EERCIACKLCEAVCPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 195 Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 EGPNFEF+TET +EL Y+KE+LLNNGD+WE+EI NI D YR Sbjct: 196 EGPNFEFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADYLYR 239 >gi|197101747|ref|NP_001125353.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial precursor [Pongo abelii] gi|269969395|sp|P0CB97|NDUS8_PONAB RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial; AltName: Full=Complex I-23kD; Short=CI-23kD; AltName: Full=NADH-ubiquinone oxidoreductase 23 kDa subunit; Flags: Precursor gi|55727800|emb|CAH90653.1| hypothetical protein [Pongo abelii] Length = 210 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 112/164 (68%), Positives = 125/164 (76%), Gaps = 2/164 (1%) Query: 1 MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59 M+ + L L E + L Y F+ TINYPFEKG SPRFRGEHALRRYP+G Sbjct: 48 MKSVTDRAARTLLLTELFRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 107 Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 EERCIACKLCEAICPAQAITIE+ PR G+RRT RYDIDM KCIYCG CQEACPVDAIV Sbjct: 108 EERCIACKLCEAICPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 166 Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 EGPNFEF+TET +EL Y+KE+LLNNGD+WE+EI NI D YR Sbjct: 167 EGPNFEFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADYLYR 210 >gi|221114662|ref|XP_002155312.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S protein 8, partial [Hydra magnipapillata] Length = 175 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 112/161 (69%), Positives = 126/161 (78%), Gaps = 1/161 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 I N + LFL + + + L Y F+ TINYPFEKG SPRFRGEHALRRYP+GEER Sbjct: 16 INNRNATILFLTDLLRGLAMTLSYVFREPATINYPFEKGPLSPRFRGEHALRRYPSGEER 75 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEAICPAQAITIE+ PR G+RRT RYDIDM KCIYCG CQEACPVDAIVEGP Sbjct: 76 CIACKLCEAICPAQAITIEAEPRPD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 134 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 NFE++TET +EL Y+KE+LL NGDRWE EI +NI D YR Sbjct: 135 NFEYSTETHEELLYNKEKLLENGDRWEVEIAKNIQADYLYR 175 >gi|194745003|ref|XP_001954982.1| GF16476 [Drosophila ananassae] gi|190628019|gb|EDV43543.1| GF16476 [Drosophila ananassae] Length = 217 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 110/161 (68%), Positives = 123/161 (76%), Gaps = 1/161 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 I + +F E F + L + FK TINYPFEKG SPRFRGEHALRRYP+GEER Sbjct: 58 ITDRAATTMFFGELFRGFAVTLAHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEER 117 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEAICPAQAITIE+ R G+RRT RYDIDM KCIYCG CQEACPVDAIVEGP Sbjct: 118 CIACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 176 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 NFEF+TET +EL Y+KE+LL NGD+WESEI N+ D YR Sbjct: 177 NFEFSTETHEELLYNKEKLLCNGDKWESEIASNLQADHLYR 217 >gi|4505371|ref|NP_002487.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial precursor [Homo sapiens] gi|115392037|ref|NP_001065248.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial precursor [Pan troglodytes] gi|2499325|sp|O00217|NDUS8_HUMAN RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial; AltName: Full=Complex I-23kD; Short=CI-23kD; AltName: Full=NADH-ubiquinone oxidoreductase 23 kDa subunit; AltName: Full=TYKY subunit; Flags: Precursor gi|115502491|sp|Q0MQI3|NDUS8_PANTR RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial; AltName: Full=Complex I-23kD; Short=CI-23kD; AltName: Full=NADH-ubiquinone oxidoreductase 23 kDa subunit; Flags: Precursor gi|269969396|sp|P0CB98|NDUS8_PONPY RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial; AltName: Full=Complex I-23kD; Short=CI-23kD; AltName: Full=NADH-ubiquinone oxidoreductase 23 kDa subunit; Flags: Precursor gi|1935056|gb|AAB51776.1| mitochondrial NADH dehydrogenase-ubiquinone Fe-S protein 8, 23 kDa subunit precursor [Homo sapiens] gi|3523123|gb|AAC34273.1| NADH dehydrogenase-ubiquinone Fe-S protein 8 23 kDa subunit [Homo sapiens] gi|110645822|gb|AAI19755.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase) [Homo sapiens] gi|111661817|gb|ABH12160.1| mitochondrial complex I subunit NDUFS8 [Pan troglodytes] gi|111661821|gb|ABH12162.1| mitochondrial complex I subunit NDUFS8 [Pongo pygmaeus] gi|119595093|gb|EAW74687.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase), isoform CRA_c [Homo sapiens] gi|189069467|dbj|BAG37133.1| unnamed protein product [Homo sapiens] Length = 210 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 111/164 (67%), Positives = 124/164 (75%), Gaps = 2/164 (1%) Query: 1 MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59 M+ + L E + L Y F+ TINYPFEKG SPRFRGEHALRRYP+G Sbjct: 48 MKSVTDRAARTLLWTELFRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 107 Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 EERCIACKLCEAICPAQAITIE+ PR G+RRT RYDIDM KCIYCG CQEACPVDAIV Sbjct: 108 EERCIACKLCEAICPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 166 Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 EGPNFEF+TET +EL Y+KE+LLNNGD+WE+EI NI D YR Sbjct: 167 EGPNFEFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADYLYR 210 >gi|126727165|ref|ZP_01743002.1| NADH dehydrogenase subunit I [Rhodobacterales bacterium HTCC2150] gi|126703593|gb|EBA02689.1| NADH dehydrogenase subunit I [Rhodobacterales bacterium HTCC2150] Length = 163 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 116/160 (72%), Positives = 133/160 (83%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 F +V + L + + F L ++YFF+ K T+NYP EKG SPRFRGEHALRRY NGEERC Sbjct: 5 FTRSVKYFLLMDIIKGFGLGMKYFFRPKATLNYPHEKGPLSPRFRGEHALRRYANGEERC 64 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAITI++ PR G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPN Sbjct: 65 IACKLCEAICPAQAITIDAEPRDD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 123 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FEFATETR+EL+YDK +LL+NGDRWESEI RN+ TD+PYR Sbjct: 124 FEFATETREELFYDKAKLLDNGDRWESEIARNLETDAPYR 163 >gi|87196499|ref|NP_777243.2| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial precursor [Bos taurus] gi|81674803|gb|AAI09907.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase) [Bos taurus] Length = 212 Score = 184 bits (468), Expect = 3e-45, Method: Composition-based stats. Identities = 109/164 (66%), Positives = 124/164 (75%), Gaps = 2/164 (1%) Query: 1 MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59 M+ + L E + + L Y F+ TINYPFEKG SPRFRGEHALRRYP+G Sbjct: 50 MKSVTDRAAQTLLWTELIRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 109 Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 EERCIACKLCEA+CPAQAI IE+ PR G+RRT RYDIDM KCIYCG CQEACPVDAIV Sbjct: 110 EERCIACKLCEAVCPAQAIIIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 168 Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 EGPNFEF+TET +EL Y+KE+LLNNGD+WE+EI NI D YR Sbjct: 169 EGPNFEFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADYLYR 212 >gi|255264062|ref|ZP_05343404.1| NADH-quinone oxidoreductase, i subunit [Thalassiobium sp. R2A62] gi|255106397|gb|EET49071.1| NADH-quinone oxidoreductase, i subunit [Thalassiobium sp. R2A62] Length = 164 Score = 184 bits (467), Expect = 3e-45, Method: Composition-based stats. Identities = 112/158 (70%), Positives = 128/158 (81%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 + +F+ F L +YFF K T+NYP EKG SPRFRGEHALRRYPNGEERCIA Sbjct: 8 RAAKYFLFADFIKGFGLGFKYFFSPKATLNYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEA+CPAQAITI++ PR G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE Sbjct: 68 CKLCEAVCPAQAITIDAEPRDD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 F+TETR+ELYYDK++LL NGDRWE+EI RN+ D+PYR Sbjct: 127 FSTETREELYYDKDKLLENGDRWEAEIARNLEMDAPYR 164 >gi|195395498|ref|XP_002056373.1| GJ10912 [Drosophila virilis] gi|194143082|gb|EDW59485.1| GJ10912 [Drosophila virilis] Length = 217 Score = 184 bits (467), Expect = 3e-45, Method: Composition-based stats. Identities = 110/161 (68%), Positives = 123/161 (76%), Gaps = 1/161 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 I + +F E F + L + FK TINYPFEKG SPRFRGEHALRRYP+GEER Sbjct: 58 ITDRAATTMFFGELFRGFAVTLAHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEER 117 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEAICPAQAITIE+ R G+RRT RYDIDM KCIYCG CQEACPVDAIVEGP Sbjct: 118 CIACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 176 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 NFEF+TET +EL Y+KE+LL NGD+WESEI N+ D YR Sbjct: 177 NFEFSTETHEELLYNKEKLLCNGDKWESEIASNLQADHLYR 217 >gi|23013091|ref|ZP_00053036.1| COG1143: Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Magnetospirillum magnetotacticum MS-1] Length = 162 Score = 184 bits (467), Expect = 3e-45, Method: Composition-based stats. Identities = 113/163 (69%), Positives = 123/163 (75%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M L E V L LRY FK+K TINYP+EKG S RFRGEHALRRYPNGE Sbjct: 1 MSFLDRTARAFLLTELVQGLALTLRYMFKSKVTINYPYEKGPLSVRFRGEHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE PR G+RR RYD+DM KCIYCGLCQEACPVDAIVE Sbjct: 61 ERCIACKLCEAICPAQAITIEPEPRPD-GSRRARRYDLDMTKCIYCGLCQEACPVDAIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFE+ATETR EL Y+K +LL NGDRWE+E+ I D+PYR Sbjct: 120 GPNFEYATETRAELMYNKSKLLANGDRWEAELAFRIAADAPYR 162 >gi|301771866|ref|XP_002921339.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial-like isoform 1 [Ailuropoda melanoleuca] gi|301771868|ref|XP_002921340.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial-like isoform 2 [Ailuropoda melanoleuca] Length = 210 Score = 184 bits (467), Expect = 3e-45, Method: Composition-based stats. Identities = 110/164 (67%), Positives = 125/164 (76%), Gaps = 2/164 (1%) Query: 1 MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59 M+ + L E V + L Y F+ TINYPFEKG SPRFRGEHALRRYP+G Sbjct: 48 MKSVTDRAAQTLLWTELVRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 107 Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 EERCIACKLCEA+CPAQAITIE+ PR G+RRT RYDIDM KCIYCG CQEACPVDAIV Sbjct: 108 EERCIACKLCEAVCPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 166 Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 EGPNFEF+TET +EL Y+KE+LL+NGD+WE+EI NI D YR Sbjct: 167 EGPNFEFSTETHEELLYNKEKLLSNGDKWEAEIAANIQADFLYR 210 >gi|296218966|ref|XP_002755672.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial-like [Callithrix jacchus] Length = 210 Score = 184 bits (467), Expect = 3e-45, Method: Composition-based stats. Identities = 112/164 (68%), Positives = 124/164 (75%), Gaps = 2/164 (1%) Query: 1 MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59 MR + L E + L Y F+ TINYPFEKG SPRFRGEHALRRYP+G Sbjct: 48 MRSVTDRAAQTLLWTELFRGLAMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 107 Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 EERCIACKLCEAICPAQAITIE+ PR G+RRT RYDIDM KCIYCG CQEACPVDAIV Sbjct: 108 EERCIACKLCEAICPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 166 Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 EGPNFEF+TET +EL Y+KE+LLNNGD+WE+EI NI D YR Sbjct: 167 EGPNFEFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADYLYR 210 >gi|298291838|ref|YP_003693777.1| NADH-quinone oxidoreductase, chain I [Starkeya novella DSM 506] gi|296928349|gb|ADH89158.1| NADH-quinone oxidoreductase, chain I [Starkeya novella DSM 506] Length = 162 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 129/163 (79%), Positives = 138/163 (84%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 MR L L EFV AFFL +RYFFK K T+NYPFEKG SPRFRGEHALRRYPNGE Sbjct: 1 MR-LDLAARQLLLTEFVSAFFLAMRYFFKPKATLNYPFEKGPVSPRFRGEHALRRYPNGE 59 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE+GPR +DGTRRT RYDIDM+KCIYCG CQEACPVDAIVE Sbjct: 60 ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGFCQEACPVDAIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEFATETR+ELYYDK +LL NGDRWE EI RN+ D+PYR Sbjct: 120 GPNFEFATETREELYYDKAKLLANGDRWEREIARNMALDAPYR 162 >gi|171680662|ref|XP_001905276.1| hypothetical protein [Podospora anserina S mat+] gi|170939958|emb|CAP65184.1| unnamed protein product [Podospora anserina S mat+] Length = 220 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 103/162 (63%), Positives = 122/162 (75%), Gaps = 1/162 (0%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 F + + E + ++ + FF+ TI YPFEKG SPRFRGEHALRRYP+GEE Sbjct: 60 STFDKLGKYFLMTEMMRGMYVLMEQFFRPPYTIYYPFEKGPISPRFRGEHALRRYPSGEE 119 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLCEA+CPAQAITIE+ R G+RRT RYDIDM KCIYCG CQE+CPVDAIVE Sbjct: 120 RCIACKLCEAVCPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQESCPVDAIVES 178 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 PN E+ATETR+EL Y+KE+LL+NGD+WE E+ I DSPYR Sbjct: 179 PNAEYATETREELLYNKEKLLSNGDKWEPELAAAIRADSPYR 220 >gi|302889235|ref|XP_003043503.1| predicted protein [Nectria haematococca mpVI 77-13-4] gi|256724420|gb|EEU37790.1| predicted protein [Nectria haematococca mpVI 77-13-4] Length = 211 Score = 184 bits (467), Expect = 4e-45, Method: Composition-based stats. Identities = 103/162 (63%), Positives = 120/162 (74%), Gaps = 1/162 (0%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 F + E ++ L FF+ TI YPFEKG SPRFRGEHALRRYP+GEE Sbjct: 51 STLDRVGKFFLMTEMARGMYVLLEQFFRPPYTIYYPFEKGPISPRFRGEHALRRYPSGEE 110 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLCEAICPAQAITIE+ R G+RRT +YDIDM KCIYCG CQE+CPVDAIVE Sbjct: 111 RCIACKLCEAICPAQAITIEAEERAD-GSRRTTKYDIDMTKCIYCGFCQESCPVDAIVES 169 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 PN E+ATETR+EL Y+KE+LL+NGD+WE E+ I D+PYR Sbjct: 170 PNAEYATETREELLYNKEKLLSNGDKWEPELAAAIRADAPYR 211 >gi|329114686|ref|ZP_08243445.1| NADH-quinone oxidoreductase subunit I [Acetobacter pomorum DM001] gi|326696166|gb|EGE47848.1| NADH-quinone oxidoreductase subunit I [Acetobacter pomorum DM001] Length = 162 Score = 184 bits (466), Expect = 4e-45, Method: Composition-based stats. Identities = 109/163 (66%), Positives = 124/163 (76%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + LKE VG R F+ K T+NYP+EKG SPRFRGEHALRRYPNGE Sbjct: 1 MGALGNTLRSFLLKELVGGMSSTFRMMFRPKVTLNYPYEKGPLSPRFRGEHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA CPA+AITIE+ R G+RRT RYDIDM KCIYCGLC+EACPVDAIVE Sbjct: 61 ERCIACKLCEATCPAEAITIEAEERDD-GSRRTTRYDIDMTKCIYCGLCEEACPVDAIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPN+EFATETR+EL YDK +LL NGDRWE+ + R + D+PYR Sbjct: 120 GPNYEFATETREELMYDKNKLLANGDRWEALLARRLELDAPYR 162 >gi|62897789|dbj|BAD96834.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase) variant [Homo sapiens] Length = 210 Score = 184 bits (466), Expect = 4e-45, Method: Composition-based stats. Identities = 110/162 (67%), Positives = 122/162 (75%), Gaps = 1/162 (0%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 + L E + L Y F+ TINYPFEKG SPRFRGEHALRRYP+GEE Sbjct: 50 SVTDRAARTLLWTELFRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSGEE 109 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLCEAICPAQAITIE+ PR G+RRT RYDIDM KCIYCG CQEACPVDAIVEG Sbjct: 110 RCIACKLCEAICPAQAITIEAEPRTD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 168 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 PNFEF+TET +EL Y+KE+LLNNGD+WE+EI NI D YR Sbjct: 169 PNFEFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADYLYR 210 >gi|319405690|emb|CBI79313.1| NADH dehydrogenase I chain I [Bartonella sp. AR 15-3] Length = 163 Score = 184 bits (466), Expect = 4e-45, Method: Composition-based stats. Identities = 125/163 (76%), Positives = 135/163 (82%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M L L EF+ AFFL +R FF K TINYP EKG S RFRGEHALRRYPNGE Sbjct: 1 MSSLIQAAKSLLLLEFISAFFLAMRQFFSPKPTINYPHEKGFVSARFRGEHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE+ PR +DGTRR +RYDIDM+KCIYCG CQEACPVDAIVE Sbjct: 61 ERCIACKLCEAICPAQAITIEASPRRNDGTRRAIRYDIDMVKCIYCGFCQEACPVDAIVE 120 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEFATETR+ELYY+KE+LLNNGDRWE EI RNI+ DSPYR Sbjct: 121 GPNFEFATETREELYYNKEKLLNNGDRWEREIARNILIDSPYR 163 >gi|324516961|gb|ADY46687.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8 [Ascaris suum] Length = 207 Score = 184 bits (466), Expect = 4e-45, Method: Composition-based stats. Identities = 108/163 (66%), Positives = 124/163 (76%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + LF E F + + +FF +TINYPFEKG SPRFRGEHALRRYP+GE Sbjct: 46 MGDINSGLHKLFFTELFRGFGVMMAHFFMEPSTINYPFEKGPLSPRFRGEHALRRYPSGE 105 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE+ R G+RRT RYDIDM KCI+CGLCQEACPVDAIVE Sbjct: 106 ERCIACKLCEAICPAQAITIEAEERPD-GSRRTTRYDIDMTKCIFCGLCQEACPVDAIVE 164 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEF+TET +EL Y+KE+LL NGDRWE E+ N+ + YR Sbjct: 165 GPNFEFSTETHEELIYNKEKLLLNGDRWEPELAANLQAEYLYR 207 >gi|195454170|ref|XP_002074119.1| GK14477 [Drosophila willistoni] gi|194170204|gb|EDW85105.1| GK14477 [Drosophila willistoni] Length = 217 Score = 184 bits (466), Expect = 4e-45, Method: Composition-based stats. Identities = 110/161 (68%), Positives = 123/161 (76%), Gaps = 1/161 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 I + +F E F + L + FK TINYPFEKG SPRFRGEHALRRYP+GEER Sbjct: 58 ITDRAATTMFFGELFRGFGVTLAHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEER 117 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEAICPAQAITIE+ R G+RRT RYDIDM KCIYCG CQEACPVDAIVEGP Sbjct: 118 CIACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 176 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 NFEF+TET +EL Y+KE+LL NGD+WESEI N+ D YR Sbjct: 177 NFEFSTETHEELLYNKEKLLCNGDKWESEIASNLQADHLYR 217 >gi|144900794|emb|CAM77658.1| NADH-quinone oxidoreductase, chain I [Magnetospirillum gryphiswaldense MSR-1] Length = 162 Score = 184 bits (466), Expect = 4e-45, Method: Composition-based stats. Identities = 110/163 (67%), Positives = 120/163 (73%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M L E V L RY FK T NYP+EK SPRFRGEHALRRY NGE Sbjct: 1 MAFLDRTARAFLLTELVQGLALTFRYMFKPSVTTNYPYEKIPMSPRFRGEHALRRYANGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE+ PR G+RR RYD+DM KCIYCGLCQEACPVDAIVE Sbjct: 61 ERCIACKLCEAICPAQAITIEAEPRPD-GSRRARRYDLDMTKCIYCGLCQEACPVDAIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEFATETR EL Y+K++LL NGDRWE+E+ I D+PYR Sbjct: 120 GPNFEFATETRAELMYNKQKLLANGDRWEAELAMRIAADAPYR 162 >gi|302694183|ref|XP_003036770.1| hypothetical protein SCHCODRAFT_72253 [Schizophyllum commune H4-8] gi|300110467|gb|EFJ01868.1| hypothetical protein SCHCODRAFT_72253 [Schizophyllum commune H4-8] Length = 236 Score = 184 bits (466), Expect = 5e-45, Method: Composition-based stats. Identities = 105/160 (65%), Positives = 122/160 (76%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 V F+ E + ++ L FF+ TI YPFEKG SPRFRGEHALRRYP+GEERC Sbjct: 78 LNKAVHMFFISEIMRGMWIVLEQFFRPPYTIMYPFEKGPLSPRFRGEHALRRYPSGEERC 137 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAITIES R G+R+T +YDIDMIKCIYCG CQEACPVDAIVE N Sbjct: 138 IACKLCEAICPAQAITIESEARAD-GSRKTTKYDIDMIKCIYCGFCQEACPVDAIVETQN 196 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 EFATETR+EL Y+KE+LL+NGDR E+EI N+ ++ YR Sbjct: 197 QEFATETREELLYNKEKLLSNGDRMEAEIAANLHSEHVYR 236 >gi|254294094|ref|YP_003060117.1| NADH dehydrogenase subunit I [Hirschia baltica ATCC 49814] gi|254042625|gb|ACT59420.1| NADH-quinone oxidoreductase, chain I [Hirschia baltica ATCC 49814] Length = 162 Score = 184 bits (466), Expect = 5e-45, Method: Composition-based stats. Identities = 113/163 (69%), Positives = 128/163 (78%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + L + V A L LRY F K T+NYPFEKG SPRFRGEHALRRY NGE Sbjct: 1 MSRISQAIKGAMLSDIVSALGLALRYMFTRKATVNYPFEKGPLSPRFRGEHALRRYANGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPAQAITIE+ PR G+RRT RYDIDM KCIYCG CQEACPVDAIVE Sbjct: 61 ERCIACKLCEAVCPAQAITIEAEPRSD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEF+TETR+EL+YDK+RLL+NGDRWE +I +N+ D+ YR Sbjct: 120 GPNFEFSTETREELFYDKDRLLSNGDRWERQIAKNLELDARYR 162 >gi|146341105|ref|YP_001206153.1| NADH dehydrogenase subunit I [Bradyrhizobium sp. ORS278] gi|156632703|sp|A4YVK2|NUOI_BRASO RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|146193911|emb|CAL77928.1| NADH-quinone oxidoreductase chain I (NADH dehydrogenase I, chain I) (NDH-1, chain I) [Bradyrhizobium sp. ORS278] Length = 162 Score = 184 bits (466), Expect = 5e-45, Method: Composition-based stats. Identities = 127/157 (80%), Positives = 138/157 (87%) Query: 7 NVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIAC 66 L L+EFV AFFL +RYFFK K T+NYPFEKG SPRFRGEHALRRYPNGEERCIAC Sbjct: 6 TARSLLLQEFVSAFFLAMRYFFKPKPTLNYPFEKGPISPRFRGEHALRRYPNGEERCIAC 65 Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 KLCEA+CPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCGLCQEACPVDAIVEGPNFEF Sbjct: 66 KLCEAVCPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGLCQEACPVDAIVEGPNFEF 125 Query: 127 ATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 ATETR+ELYYDK +LL NGDRWE EI + I D+PYR Sbjct: 126 ATETREELYYDKAKLLANGDRWEREISKAIALDAPYR 162 >gi|254780861|ref|YP_003065274.1| NADH dehydrogenase subunit I [Candidatus Liberibacter asiaticus str. psy62] gi|254040538|gb|ACT57334.1| NADH dehydrogenase subunit I [Candidatus Liberibacter asiaticus str. psy62] Length = 163 Score = 184 bits (466), Expect = 5e-45, Method: Composition-based stats. Identities = 163/163 (100%), Positives = 163/163 (100%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE Sbjct: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE Sbjct: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR Sbjct: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 >gi|182889618|gb|AAI65418.1| Zgc:109991 protein [Danio rerio] Length = 210 Score = 184 bits (466), Expect = 5e-45, Method: Composition-based stats. Identities = 111/162 (68%), Positives = 120/162 (74%), Gaps = 1/162 (0%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 I L L E + L Y F+ TINYPFEKG SPRFRGEHALRRYPNGEE Sbjct: 50 SITDRAAQTLLLTELCRGLAMALSYLFREPATINYPFEKGPLSPRFRGEHALRRYPNGEE 109 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLCEA+CPAQAITIE+ R G RRT RYDIDM KCIYCG CQEACPVDAIVEG Sbjct: 110 RCIACKLCEAVCPAQAITIEAETRAD-GNRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 168 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 PNFE++TET +EL Y+KE+LLNNGDRWE EI NI D YR Sbjct: 169 PNFEYSTETHEELLYNKEKLLNNGDRWEVEIAANIQADYLYR 210 >gi|312372009|gb|EFR20062.1| hypothetical protein AND_20740 [Anopheles darlingi] Length = 216 Score = 184 bits (466), Expect = 5e-45, Method: Composition-based stats. Identities = 110/161 (68%), Positives = 121/161 (75%), Gaps = 1/161 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 I +F E + L + FK TINYPFEKG SPRFRGEHALRRYP+GEER Sbjct: 57 ITDRAAQTIFWTELFRGAAVTLAHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEER 116 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEAICPAQAITIE+ R G+RRT RYDIDM KCIYCG CQEACPVDAIVEGP Sbjct: 117 CIACKLCEAICPAQAITIEAEERSD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 175 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 NFEF+TET +EL Y+KE+LL NGD+WESEI NI D YR Sbjct: 176 NFEFSTETHEELLYNKEKLLTNGDKWESEIASNINADYLYR 216 >gi|66773136|ref|NP_001019573.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8b [Danio rerio] gi|66267262|gb|AAH95111.1| Zgc:109991 [Danio rerio] Length = 210 Score = 184 bits (466), Expect = 5e-45, Method: Composition-based stats. Identities = 111/162 (68%), Positives = 121/162 (74%), Gaps = 1/162 (0%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 I L L E + L Y F+ TINYPFEKG SPRFRGEHALRRYPNGEE Sbjct: 50 SITDRAAQTLLLTELCRGLAMALSYLFREPATINYPFEKGPLSPRFRGEHALRRYPNGEE 109 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLCEA+CPAQAITIE+ R G+RRT RYDIDM KCIYCG CQEACPVDAIVEG Sbjct: 110 RCIACKLCEAVCPAQAITIEAETRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 168 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 PNFE++TET +EL Y+KE+LLNNGDRWE EI NI D YR Sbjct: 169 PNFEYSTETHEELLYNKEKLLNNGDRWEVEIAANIQADYLYR 210 >gi|320165166|gb|EFW42065.1| mitochondrial NADH:ubiquinone oxidoreductase complex I [Capsaspora owczarzaki ATCC 30864] Length = 230 Score = 183 bits (465), Expect = 5e-45, Method: Composition-based stats. Identities = 108/162 (66%), Positives = 127/162 (78%), Gaps = 1/162 (0%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 +I N S LF E G L L YFF+ K T++YPFEKG SPRFRGEHALRRYP+GEE Sbjct: 70 QIVDNNASTLFFSELFGGMRLTLDYFFRPKATLHYPFEKGPLSPRFRGEHALRRYPSGEE 129 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLCEAICPA AITIE+ PR G+RRT RYDID+ KCIYCG CQEACPVDAIVEG Sbjct: 130 RCIACKLCEAICPAMAITIEAEPRAD-GSRRTTRYDIDLTKCIYCGFCQEACPVDAIVEG 188 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 PNFE+ATET +EL +K++LL+NGD+WE E+ N+ ++ YR Sbjct: 189 PNFEYATETHEELLANKDKLLSNGDKWEPELAANLQSEYLYR 230 >gi|148255905|ref|YP_001240490.1| NADH dehydrogenase subunit I [Bradyrhizobium sp. BTAi1] gi|156632578|sp|A5EK90|NUOI_BRASB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|146408078|gb|ABQ36584.1| NADH dehydrogenase subunit I [Bradyrhizobium sp. BTAi1] Length = 162 Score = 183 bits (465), Expect = 6e-45, Method: Composition-based stats. Identities = 126/157 (80%), Positives = 137/157 (87%) Query: 7 NVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIAC 66 L L EFV AFFL +RYFF+ K T+NYPFEKG SPRFRGEHALRRYPNGEERCIAC Sbjct: 6 TARSLLLSEFVSAFFLAMRYFFQPKPTLNYPFEKGPISPRFRGEHALRRYPNGEERCIAC 65 Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 KLCEA+CPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCGLCQEACPVDAIVEGPNFEF Sbjct: 66 KLCEAVCPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGLCQEACPVDAIVEGPNFEF 125 Query: 127 ATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 ATETR+ELYYDK +LL NGDRWE EI + I D+PYR Sbjct: 126 ATETREELYYDKAKLLANGDRWEREISKAIALDAPYR 162 >gi|99080595|ref|YP_612749.1| NADH dehydrogenase subunit I [Ruegeria sp. TM1040] gi|115502544|sp|Q1GIM9|NUOI_SILST RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|99036875|gb|ABF63487.1| NADH-quinone oxidoreductase chain I [Ruegeria sp. TM1040] Length = 164 Score = 183 bits (465), Expect = 6e-45, Method: Composition-based stats. Identities = 114/158 (72%), Positives = 130/158 (82%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 + L++ F L L+YFF K TINYP EKG SPRFRGEHALRRYPNGEERCIA Sbjct: 8 RAAKYFLLQDVWQGFKLGLKYFFAPKATINYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEA+CPAQAITI++ PR DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE Sbjct: 68 CKLCEAVCPAQAITIDAEPR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FATETR+EL+YDK++LL NG+RWE+EI RN+ D+PYR Sbjct: 127 FATETREELFYDKDKLLANGERWEAEIARNLELDAPYR 164 >gi|163868365|ref|YP_001609574.1| NADH dehydrogenase subunit I [Bartonella tribocorum CIP 105476] gi|240850591|ref|YP_002971991.1| NADH dehydrogenase I subunit I [Bartonella grahamii as4aup] gi|189030923|sp|A9IUN3|NUOI_BART1 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|161018021|emb|CAK01579.1| NADH dehydrogenase I chain I [Bartonella tribocorum CIP 105476] gi|240267714|gb|ACS51302.1| NADH dehydrogenase I subunit I [Bartonella grahamii as4aup] Length = 163 Score = 183 bits (465), Expect = 6e-45, Method: Composition-based stats. Identities = 128/163 (78%), Positives = 138/163 (84%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M F L L EFV AFFL +R FF K TINYP+EKG S RFRGEHALRRYPNGE Sbjct: 1 MSGFIQAAKSLLLLEFVSAFFLAMRQFFSPKPTINYPYEKGFVSQRFRGEHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPV+AIVE Sbjct: 61 ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVEAIVE 120 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEFATETR+ELYYDKE+LL NGDRWE EI RNI+ D+PYR Sbjct: 121 GPNFEFATETREELYYDKEKLLMNGDRWEREIARNILMDAPYR 163 >gi|115502490|sp|Q0MQI2|NDUS8_GORGO RecName: Full=NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial; AltName: Full=Complex I-23kD; Short=CI-23kD; AltName: Full=NADH-ubiquinone oxidoreductase 23 kDa subunit; Flags: Precursor gi|111661819|gb|ABH12161.1| mitochondrial complex I subunit NDUFS8 [Gorilla gorilla] Length = 210 Score = 183 bits (465), Expect = 6e-45, Method: Composition-based stats. Identities = 111/164 (67%), Positives = 124/164 (75%), Gaps = 2/164 (1%) Query: 1 MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59 M+ + L E + L Y F+ TINYPFEKG SPRFRGEHALRRYP+G Sbjct: 48 MKSVTDRAARTLLWTELFRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 107 Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 EERCIACKLCEAICPAQAITIE+ PR G+RRT RYDIDM KCIYCG CQEACPVDAIV Sbjct: 108 EERCIACKLCEAICPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 166 Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 EGPNFEF+TET +EL Y+KE+LLNNGD+WE+EI NI D YR Sbjct: 167 EGPNFEFSTETHEELLYNKEKLLNNGDKWEAEITANIQADYLYR 210 >gi|85076501|ref|XP_955936.1| NADH:ubiquinone oxidoreductase 21.3c kD subunit [Neurospora crassa OR74A] gi|3929361|sp|Q12644|NDUS8_NEUCR RecName: Full=NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial; AltName: Full=Complex I-23kD; Short=CI-23kD; Flags: Precursor gi|1246816|emb|CAA64794.1| ferredoxin-like iron-sulfur subunit of mitochondrial complex I [Neurospora crassa] gi|28916969|gb|EAA26700.1| NADH:ubiquinone oxidoreductase 21.3c kD subunit [Neurospora crassa OR74A] Length = 219 Score = 183 bits (465), Expect = 6e-45, Method: Composition-based stats. Identities = 104/161 (64%), Positives = 122/161 (75%), Gaps = 1/161 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 + N + L E ++ + FF+ TI YPFEKG SPRFRGEHALRRYP+GEER Sbjct: 60 VLDKNGRYFLLTEMFRGMYVAMEQFFRPPYTIYYPFEKGPISPRFRGEHALRRYPSGEER 119 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEA+CPAQAITIE+ R G+RRT RYDIDM KCIYCG CQE+CPVDAIVE P Sbjct: 120 CIACKLCEAVCPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQESCPVDAIVESP 178 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 N E+ATETR+EL Y+KE+LL+NGD+WE E+ I DSPYR Sbjct: 179 NAEYATETREELLYNKEKLLSNGDKWEPELAAAIRADSPYR 219 >gi|39936007|ref|NP_948283.1| NADH dehydrogenase subunit I [Rhodopseudomonas palustris CGA009] gi|192291662|ref|YP_001992267.1| NADH dehydrogenase subunit I [Rhodopseudomonas palustris TIE-1] gi|81562357|sp|Q6N5N2|NUOI1_RHOPA RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName: Full=NADH dehydrogenase I subunit I 1; AltName: Full=NDH-1 subunit I 1 gi|39649861|emb|CAE28383.1| NADH-ubiquinone dehydrogenase chain I [Rhodopseudomonas palustris CGA009] gi|192285411|gb|ACF01792.1| NADH-quinone oxidoreductase, chain I [Rhodopseudomonas palustris TIE-1] Length = 162 Score = 183 bits (465), Expect = 6e-45, Method: Composition-based stats. Identities = 127/157 (80%), Positives = 135/157 (85%) Query: 7 NVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIAC 66 L L EFV AFFL +RYFFK K TINYPFEK SPRFRGEHALRRYPNGEERCIAC Sbjct: 6 TARSLLLTEFVSAFFLAMRYFFKPKPTINYPFEKNPISPRFRGEHALRRYPNGEERCIAC 65 Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 KLCEA+CPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVEGPNFEF Sbjct: 66 KLCEAVCPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVEGPNFEF 125 Query: 127 ATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 ATETR+ELYYDK RLL NGDRWE EI + I D+PYR Sbjct: 126 ATETREELYYDKARLLANGDRWEREIAKAISLDAPYR 162 >gi|254475969|ref|ZP_05089355.1| NADH dehydrogenase i, i subunit [Ruegeria sp. R11] gi|214030212|gb|EEB71047.1| NADH dehydrogenase i, i subunit [Ruegeria sp. R11] Length = 164 Score = 183 bits (465), Expect = 6e-45, Method: Composition-based stats. Identities = 114/158 (72%), Positives = 131/158 (82%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 + L++F L L+YFF K T+NYP EKG SPRFRGEHALRRYPNGEERCIA Sbjct: 8 RAAKYFLLQDFWAGMKLGLKYFFAPKATVNYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEA+CPAQAITI++ PR DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE Sbjct: 68 CKLCEAVCPAQAITIDAEPR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FATETR+EL+YDKE+LL+NG+RWE+EI RN+ D+PYR Sbjct: 127 FATETREELFYDKEKLLSNGERWEAEIARNLELDAPYR 164 >gi|195037807|ref|XP_001990352.1| GH18285 [Drosophila grimshawi] gi|193894548|gb|EDV93414.1| GH18285 [Drosophila grimshawi] Length = 217 Score = 183 bits (465), Expect = 6e-45, Method: Composition-based stats. Identities = 110/161 (68%), Positives = 123/161 (76%), Gaps = 1/161 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 I + +F E F + L + FK TINYPFEKG SPRFRGEHALRRYP+GEER Sbjct: 58 ITDRAATTMFFGELFRGFAVTLAHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEER 117 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEAICPAQAITIE+ R G+RRT RYDIDM KCIYCG CQEACPVDAIVEGP Sbjct: 118 CIACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 176 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 NFEF+TET +EL Y+KE+LL NGD+WESEI N+ D YR Sbjct: 177 NFEFSTETHEELLYNKEKLLCNGDKWESEIASNLQADHLYR 217 >gi|55742238|ref|NP_001006930.1| NADH dehydrogenase ubiquinone Fe-S 8 [Xenopus (Silurana) tropicalis] gi|50416643|gb|AAH77660.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase) [Xenopus (Silurana) tropicalis] gi|89271932|emb|CAJ82191.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase) [Xenopus (Silurana) tropicalis] Length = 209 Score = 183 bits (465), Expect = 7e-45, Method: Composition-based stats. Identities = 109/162 (67%), Positives = 121/162 (74%), Gaps = 1/162 (0%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 + L E + L Y F+ TINYPFEKG SPRFRGEHALRRYP+GEE Sbjct: 49 SVTDRAAQTLLWTELFRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSGEE 108 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLCEA+CPAQAITIE+ PR G+RRT RYDIDM KCIYCG CQEACPVDAIVEG Sbjct: 109 RCIACKLCEAVCPAQAITIEAEPRTD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 167 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 PNFEF+TET +EL Y+KE+LLNNGD+WE EI NI D YR Sbjct: 168 PNFEFSTETHEELLYNKEKLLNNGDKWEVEIGANIQADFLYR 209 >gi|254439108|ref|ZP_05052602.1| NADH-quinone oxidoreductase, chain I subfamily [Octadecabacter antarcticus 307] gi|198254554|gb|EDY78868.1| NADH-quinone oxidoreductase, chain I subfamily [Octadecabacter antarcticus 307] Length = 168 Score = 183 bits (464), Expect = 7e-45, Method: Composition-based stats. Identities = 113/160 (70%), Positives = 130/160 (81%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + + L +F F L +YFF K T+NYP EKG SPRFRGEHALRRYPNGEERC Sbjct: 10 YNRAAKYFLLADFAKGFRLGFKYFFAPKVTLNYPHEKGPLSPRFRGEHALRRYPNGEERC 69 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEA+CPAQAITI++ PR G+RRT RYDIDM KCIYCG C+EACPVDAIVEGPN Sbjct: 70 IACKLCEAVCPAQAITIDAEPRDD-GSRRTTRYDIDMTKCIYCGFCEEACPVDAIVEGPN 128 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FEF+TETR+ELYYDKE+LL+NGDRWE+EI RN+ D+PYR Sbjct: 129 FEFSTETREELYYDKEKLLDNGDRWEAEIARNLEMDAPYR 168 >gi|46204691|ref|ZP_00049610.2| COG1143: Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Magnetospirillum magnetotacticum MS-1] Length = 196 Score = 183 bits (464), Expect = 7e-45, Method: Composition-based stats. Identities = 125/163 (76%), Positives = 136/163 (83%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M+ L LKEFV FFL ++YFFK K TINYPFE G PRFRGEHALRRYPNGE Sbjct: 1 MK-LDQVARSLLLKEFVSGFFLAMKYFFKPKATINYPFEMGHRGPRFRGEHALRRYPNGE 59 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE+GPR +DGTRRT RYDIDM+KCIYCG+CQEACPVDAIVE Sbjct: 60 ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGMCQEACPVDAIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEF+ ETR+EL YDKE+LL NGDRWE EI RNI D+PYR Sbjct: 120 GPNFEFSVETREELLYDKEKLLANGDRWEREIARNIALDAPYR 162 >gi|289620443|emb|CBI53016.1| unnamed protein product [Sordaria macrospora] Length = 221 Score = 183 bits (464), Expect = 7e-45, Method: Composition-based stats. Identities = 103/160 (64%), Positives = 121/160 (75%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 N + L E ++ + FF+ TI YPFEKG SPRFRGEHALRRYP+GEERC Sbjct: 63 LDKNGRYFLLTEMFRGMYVAMEQFFRPPYTIYYPFEKGPISPRFRGEHALRRYPSGEERC 122 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEA+CPAQAITIE+ R G+RRT RYDIDM KCIYCG CQE+CPVDAIVE PN Sbjct: 123 IACKLCEAVCPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQESCPVDAIVESPN 181 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ATETR+EL Y+KE+LL+NGD+WE E+ I D+PYR Sbjct: 182 AEYATETREELLYNKEKLLSNGDKWEPELAAAIRADAPYR 221 >gi|89070163|ref|ZP_01157492.1| NADH dehydrogenase subunit I [Oceanicola granulosus HTCC2516] gi|89044280|gb|EAR50426.1| NADH dehydrogenase subunit I [Oceanicola granulosus HTCC2516] Length = 164 Score = 183 bits (464), Expect = 7e-45, Method: Composition-based stats. Identities = 115/158 (72%), Positives = 130/158 (82%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 + L++F F L +YFFK K T+NYP EKG SPRFRGEHALRRYPNGEERCIA Sbjct: 8 RAAKYFLLQDFFQGFKLGFKYFFKPKATVNYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEAICPAQAITI++ PR DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE Sbjct: 68 CKLCEAICPAQAITIDAEPR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 F+TETR+ELYYDK +LL NG+RWE+EI RN+ D+PYR Sbjct: 127 FSTETREELYYDKAKLLENGERWEAEIARNLEIDAPYR 164 >gi|87200306|ref|YP_497563.1| NADH dehydrogenase subunit I [Novosphingobium aromaticivorans DSM 12444] gi|115502536|sp|Q2G5Z4|NUOI_NOVAD RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|87135987|gb|ABD26729.1| NADH dehydrogenase subunit I [Novosphingobium aromaticivorans DSM 12444] Length = 161 Score = 183 bits (464), Expect = 7e-45, Method: Composition-based stats. Identities = 115/158 (72%), Positives = 129/158 (81%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 + L EFV A +L L+YFFK K TINYPFEK SPRFRGEHALRRYPNGEERCIA Sbjct: 5 QLIKSFTLWEFVKAHWLTLKYFFKPKATINYPFEKNPLSPRFRGEHALRRYPNGEERCIA 64 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEA+CPAQAITIE+ PR DG+RRT RYDIDM KCI+CG CQEACPVDAIVEGPNFE Sbjct: 65 CKLCEAVCPAQAITIEAEPR-EDGSRRTTRYDIDMTKCIFCGFCQEACPVDAIVEGPNFE 123 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 +ATETR+EL YDK +LL+NGD+WE I N+ D+PYR Sbjct: 124 YATETREELLYDKAKLLSNGDKWERAIAANLEADAPYR 161 >gi|86137588|ref|ZP_01056165.1| NADH dehydrogenase I, I subunit [Roseobacter sp. MED193] gi|85825923|gb|EAQ46121.1| NADH dehydrogenase I, I subunit [Roseobacter sp. MED193] Length = 165 Score = 183 bits (464), Expect = 7e-45, Method: Composition-based stats. Identities = 115/158 (72%), Positives = 131/158 (82%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 + L++F F L L+YFF K TINYP EKG SPRFRGEHALRRYPNGEERCIA Sbjct: 9 RAAKYFLLQDFWVGFKLGLKYFFAPKATINYPHEKGPLSPRFRGEHALRRYPNGEERCIA 68 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEA+CPAQAITI++ PR DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE Sbjct: 69 CKLCEAVCPAQAITIDAEPR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 127 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FATETR+EL+YDK++LL NG+RWE+EI RN+ D+PYR Sbjct: 128 FATETREELFYDKDKLLANGERWEAEIARNLEIDAPYR 165 >gi|316933901|ref|YP_004108883.1| NADH-quinone oxidoreductase subunit I [Rhodopseudomonas palustris DX-1] gi|315601615|gb|ADU44150.1| NADH-quinone oxidoreductase, chain I [Rhodopseudomonas palustris DX-1] Length = 162 Score = 183 bits (464), Expect = 7e-45, Method: Composition-based stats. Identities = 128/157 (81%), Positives = 135/157 (85%) Query: 7 NVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIAC 66 L L EFV AFFL +RYFFK K TINYPFEK SPRFRGEHALRRYPNGEERCIAC Sbjct: 6 AARSLLLTEFVSAFFLAMRYFFKPKPTINYPFEKNPISPRFRGEHALRRYPNGEERCIAC 65 Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 KLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVEGPNFEF Sbjct: 66 KLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVEGPNFEF 125 Query: 127 ATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 ATETR+ELYYDK RLL NGDRWE EI + I D+PYR Sbjct: 126 ATETREELYYDKARLLANGDRWEREIAKAISLDAPYR 162 >gi|158301718|ref|XP_321378.4| AGAP001711-PA [Anopheles gambiae str. PEST] gi|157012608|gb|EAA00878.4| AGAP001711-PA [Anopheles gambiae str. PEST] Length = 214 Score = 183 bits (464), Expect = 8e-45, Method: Composition-based stats. Identities = 110/161 (68%), Positives = 122/161 (75%), Gaps = 1/161 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 I +F E + L + FK TINYPFEKG SPRFRGEHALRRYP+GEER Sbjct: 55 ITDRAAQTIFWTELFRGAAVTLAHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEER 114 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEAICPAQAITIE+ R G+RRT RYDIDM KCIYCG CQEACPVDAIVEGP Sbjct: 115 CIACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 173 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 NFEF+TET +EL Y+KE+LL+NGD+WESEI NI D YR Sbjct: 174 NFEFSTETHEELLYNKEKLLSNGDKWESEIATNINADYLYR 214 >gi|118090950|ref|XP_001232780.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) [Gallus gallus] Length = 209 Score = 183 bits (464), Expect = 8e-45, Method: Composition-based stats. Identities = 111/164 (67%), Positives = 123/164 (75%), Gaps = 2/164 (1%) Query: 1 MRIF-RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59 M+ L E + L Y F+ TINYPFEKG SPRFRGEHALRRYP+G Sbjct: 47 MKSITDRAAQTLLWTELFRGLAMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 106 Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 EERCIACKLCEAICPAQAITIE+ PR G+RRT RYDIDM KCIYCG CQEACPVDAIV Sbjct: 107 EERCIACKLCEAICPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 165 Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 EGPNFEF+TET +EL Y+KE+LLNNGD+WE+EI NI D YR Sbjct: 166 EGPNFEFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADYLYR 209 >gi|83951754|ref|ZP_00960486.1| NADH dehydrogenase I, I subunit [Roseovarius nubinhibens ISM] gi|83836760|gb|EAP76057.1| NADH dehydrogenase I, I subunit [Roseovarius nubinhibens ISM] Length = 164 Score = 183 bits (464), Expect = 8e-45, Method: Composition-based stats. Identities = 119/158 (75%), Positives = 132/158 (83%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 + L +FV F L L+YFF KTT+NYP EKG SPRFRGEHALRRYPNGEERCIA Sbjct: 8 RAAGYFLLSDFVKGFKLGLKYFFAPKTTLNYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEAICPAQAITI++ PR G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE Sbjct: 68 CKLCEAICPAQAITIDAEPRDD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FATETR+EL+YDKERLL+NGDRWE+EI RN+ D+PYR Sbjct: 127 FATETREELFYDKERLLDNGDRWEAEIARNLEMDAPYR 164 >gi|77463081|ref|YP_352585.1| NADH dehydrogenase subunit I [Rhodobacter sphaeroides 2.4.1] gi|126461953|ref|YP_001043067.1| NADH dehydrogenase subunit I [Rhodobacter sphaeroides ATCC 17029] gi|221638937|ref|YP_002525199.1| NADH dehydrogenase subunit I [Rhodobacter sphaeroides KD131] gi|332557954|ref|ZP_08412276.1| NADH dehydrogenase subunit I [Rhodobacter sphaeroides WS8N] gi|115502510|sp|Q3J3F0|NUOI1_RHOS4 RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName: Full=NADH dehydrogenase I subunit I 1; AltName: Full=NDH-1 subunit I 1 gi|156632691|sp|A3PIX9|NUOI1_RHOS1 RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName: Full=NADH dehydrogenase I subunit I 1; AltName: Full=NDH-1 subunit I 1 gi|77387499|gb|ABA78684.1| Subunit of NADH-ubiquinone oxidoreductase (Complex I) that contains 2 Fe-S centers [Rhodobacter sphaeroides 2.4.1] gi|126103617|gb|ABN76295.1| NADH-quinone oxidoreductase, chain I [Rhodobacter sphaeroides ATCC 17029] gi|221159718|gb|ACM00698.1| NADH-quinone oxidoreductase subunit I 1 [Rhodobacter sphaeroides KD131] gi|332275666|gb|EGJ20981.1| NADH dehydrogenase subunit I [Rhodobacter sphaeroides WS8N] Length = 167 Score = 183 bits (464), Expect = 8e-45, Method: Composition-based stats. Identities = 112/158 (70%), Positives = 130/158 (82%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 + L +F+ F L ++YFF K T+NYP EKG SPRFRGEHALRRYPNGEERCIA Sbjct: 11 RAAKYFLLLDFIKGFGLGMKYFFAPKHTVNYPHEKGPLSPRFRGEHALRRYPNGEERCIA 70 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEA+CPAQAITI++ PR DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE Sbjct: 71 CKLCEAVCPAQAITIDAEPR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 129 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 F+TETR+EL+Y+K+RLL NG RWE+EI RN+ D+PYR Sbjct: 130 FSTETREELFYNKDRLLENGARWEAEIARNLELDAPYR 167 >gi|115524538|ref|YP_781449.1| NADH dehydrogenase subunit I [Rhodopseudomonas palustris BisA53] gi|122296203|sp|Q07NL5|NUOI2_RHOP5 RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName: Full=NADH dehydrogenase I subunit I 2; AltName: Full=NDH-1 subunit I 2 gi|115518485|gb|ABJ06469.1| NADH-quinone oxidoreductase, chain I [Rhodopseudomonas palustris BisA53] Length = 162 Score = 182 bits (463), Expect = 9e-45, Method: Composition-based stats. Identities = 125/157 (79%), Positives = 137/157 (87%) Query: 7 NVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIAC 66 L L EFV AFFL +RYFFK K T+NYPFEKG SPRFRGEHALRRYPNGEERCIAC Sbjct: 6 AARSLLLTEFVSAFFLAMRYFFKPKPTLNYPFEKGPISPRFRGEHALRRYPNGEERCIAC 65 Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 KLCEA+CPAQAITIE+GPR +DGTRRT RYDIDM+KCIYCGLCQEACPVDAIVEGPNFEF Sbjct: 66 KLCEAVCPAQAITIEAGPRRNDGTRRTERYDIDMVKCIYCGLCQEACPVDAIVEGPNFEF 125 Query: 127 ATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 ATETR+ELYYDK +LL NGDRWE EI +++ D+PYR Sbjct: 126 ATETREELYYDKAKLLANGDRWEREIAKHMALDAPYR 162 >gi|49474185|ref|YP_032227.1| NADH dehydrogenase subunit I [Bartonella quintana str. Toulouse] gi|81696041|sp|Q6FZY3|NUOI_BARQU RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|49239689|emb|CAF26064.1| NADH dehydrogenase I, I subunit [Bartonella quintana str. Toulouse] Length = 163 Score = 182 bits (463), Expect = 9e-45, Method: Composition-based stats. Identities = 126/163 (77%), Positives = 136/163 (83%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M L L EFV AFFL +R FF K TINYP+EKG S RFRGEHALRRYPNGE Sbjct: 1 MSGLIQAAKSLLLLEFVSAFFLAMRQFFSPKPTINYPYEKGVVSQRFRGEHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPV+AIVE Sbjct: 61 ERCIACKLCEAICPAQAITIEAGPRGNDGTRRTVRYDIDMVKCIYCGFCQEACPVEAIVE 120 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEFATE R+ELYYDKE+LL NGDRWE EI RNI+ D+PYR Sbjct: 121 GPNFEFATEMREELYYDKEKLLMNGDRWEREIARNILIDAPYR 163 >gi|284434569|gb|ADB85312.1| putative NADH-ubiquinone [Phyllostachys edulis] Length = 221 Score = 182 bits (463), Expect = 9e-45, Method: Composition-based stats. Identities = 116/161 (72%), Positives = 130/161 (80%), Gaps = 3/161 (1%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 +F +++ LFL E V L L+YFF+ K INYPFEKG SPRFRGEHALRRY GEER Sbjct: 64 VFERSINTLFLTEMVRGLMLTLKYFFERK--INYPFEKGPLSPRFRGEHALRRYETGEER 121 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEAICPAQAITIE+ R DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGP Sbjct: 122 CIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 180 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 NFEFATET +EL YDKE+LL NGDRWE+EI N+ ++S YR Sbjct: 181 NFEFATETHEELLYDKEKLLENGDRWETEIAANLKSESLYR 221 >gi|149914591|ref|ZP_01903121.1| NADH dehydrogenase subunit I [Roseobacter sp. AzwK-3b] gi|149811384|gb|EDM71219.1| NADH dehydrogenase subunit I [Roseobacter sp. AzwK-3b] Length = 164 Score = 182 bits (463), Expect = 9e-45, Method: Composition-based stats. Identities = 116/158 (73%), Positives = 131/158 (82%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 + LK+F+ F L L+YFF K T+NYP EKG SPRFRGEHALRRYPNGEERCIA Sbjct: 8 RAAGYFLLKDFLVGFRLGLKYFFAPKATLNYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEAICPAQAITI++ PR G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE Sbjct: 68 CKLCEAICPAQAITIDAEPRDD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FATETR+EL+YDK++LL NGDRWE+EI RN+ D+PYR Sbjct: 127 FATETREELFYDKQKLLENGDRWEAEIARNLELDAPYR 164 >gi|260434168|ref|ZP_05788139.1| NADH-quinone oxidoreductase subunit i [Silicibacter lacuscaerulensis ITI-1157] gi|260417996|gb|EEX11255.1| NADH-quinone oxidoreductase subunit i [Silicibacter lacuscaerulensis ITI-1157] Length = 164 Score = 182 bits (463), Expect = 9e-45, Method: Composition-based stats. Identities = 115/158 (72%), Positives = 131/158 (82%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 + L++F F L ++YFF K T+NYP EKG SPRFRGEHALRRYPNGEERCIA Sbjct: 8 RAAKYFLLQDFWQGFKLGMKYFFAPKATVNYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEAICPAQAITI++ PR DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE Sbjct: 68 CKLCEAICPAQAITIDAEPR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FATETR+EL+YDK++LL NGDRWE+EI RN+ D+PYR Sbjct: 127 FATETREELFYDKQKLLENGDRWEAEIARNLELDAPYR 164 >gi|170068344|ref|XP_001868829.1| NADH dehydrogenase iron-sulfur protein 8, mitochondrial [Culex quinquefasciatus] gi|167864397|gb|EDS27780.1| NADH dehydrogenase iron-sulfur protein 8, mitochondrial [Culex quinquefasciatus] Length = 213 Score = 182 bits (463), Expect = 9e-45, Method: Composition-based stats. Identities = 110/161 (68%), Positives = 122/161 (75%), Gaps = 1/161 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 I +F E + L + FK TINYPFEKG SPRFRGEHALRRYP+GEER Sbjct: 54 ITDRAAQTIFWTELFRGAAVTLAHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEER 113 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEAICPAQAITIE+ R G+RRT RYDIDM KCIYCG CQEACPVDAIVEGP Sbjct: 114 CIACKLCEAICPAQAITIEAEERTD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 172 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 NFEF+TET +EL Y+KE+LL+NGD+WESEI NI D YR Sbjct: 173 NFEFSTETHEELLYNKEKLLSNGDKWESEIASNINADYLYR 213 >gi|73982759|ref|XP_864136.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial precursor (Complex I-23KD) (CI-23KD) (TYKY subunit) isoform 2 [Canis familiaris] Length = 206 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 107/160 (66%), Positives = 123/160 (76%), Gaps = 2/160 (1%) Query: 1 MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59 M+ + L E + + L Y F+ TINYPFEKG SPRFRGEHALRRYP+G Sbjct: 48 MKSVTDRAAQTLLWTELIRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 107 Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 EERCIACKLCEA+CPAQAITIE+ PR G+RRT RYDIDM KCIYCG CQEACPVDAIV Sbjct: 108 EERCIACKLCEAVCPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 166 Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 EGPNFEF+TET +EL Y+KE+LL+NGD+WE+EI NI D Sbjct: 167 EGPNFEFSTETHEELLYNKEKLLSNGDKWEAEIAANIQAD 206 >gi|114765005|ref|ZP_01444152.1| NADH dehydrogenase subunit I [Pelagibaca bermudensis HTCC2601] gi|114542552|gb|EAU45577.1| NADH dehydrogenase subunit I [Roseovarius sp. HTCC2601] Length = 164 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 113/158 (71%), Positives = 130/158 (82%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 + L +F+ F L L+YFF K T+NYP EKG SPRFRGEHALRRYPNGEERCIA Sbjct: 8 RAAKYFLLTDFIKGFALGLKYFFAPKPTLNYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEAICPAQAITI++ PR G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE Sbjct: 68 CKLCEAICPAQAITIDAEPRDD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FAT+TR+EL+YDK++LL NG+RWE+EI RN+ D+PYR Sbjct: 127 FATDTREELFYDKQKLLENGERWEAEIARNLELDAPYR 164 >gi|326428756|gb|EGD74326.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Salpingoeca sp. ATCC 50818] Length = 209 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 108/161 (67%), Positives = 125/161 (77%), Gaps = 1/161 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 + LFL E + + L Y+F+ TI YPFEKG SPRFRGEHALRRYP+GEER Sbjct: 50 VMESASKTLFLTEVLRGMGMTLSYYFRKPATIYYPFEKGPLSPRFRGEHALRRYPSGEER 109 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEAICPAQAITIE+ PR DG+RRT RYDIDM KCI+CG CQEACPVDAIVEGP Sbjct: 110 CIACKLCEAICPAQAITIETVPR-EDGSRRTTRYDIDMTKCIFCGFCQEACPVDAIVEGP 168 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 NFE++TET QEL Y+K++LL NGD+WE EI +NI + YR Sbjct: 169 NFEYSTETHQELLYNKDKLLANGDKWEVEIQKNIEAEHLYR 209 >gi|73982757|ref|XP_851642.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial precursor (Complex I-23KD) (CI-23KD) (TYKY subunit) isoform 1 [Canis familiaris] Length = 216 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 107/160 (66%), Positives = 123/160 (76%), Gaps = 2/160 (1%) Query: 1 MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59 M+ + L E + + L Y F+ TINYPFEKG SPRFRGEHALRRYP+G Sbjct: 58 MKSVTDRAAQTLLWTELIRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 117 Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 EERCIACKLCEA+CPAQAITIE+ PR G+RRT RYDIDM KCIYCG CQEACPVDAIV Sbjct: 118 EERCIACKLCEAVCPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 176 Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 EGPNFEF+TET +EL Y+KE+LL+NGD+WE+EI NI D Sbjct: 177 EGPNFEFSTETHEELLYNKEKLLSNGDKWEAEIAANIQAD 216 >gi|156379274|ref|XP_001631383.1| predicted protein [Nematostella vectensis] gi|156218422|gb|EDO39320.1| predicted protein [Nematostella vectensis] Length = 182 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 111/159 (69%), Positives = 123/159 (77%), Gaps = 1/159 (0%) Query: 5 RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64 N + LF E + + L F+ TINYPFEKG SPRFRGEHALRRYP+GEERCI Sbjct: 25 DRNATTLFFGELLRGLAMTLSKLFQEPATINYPFEKGPLSPRFRGEHALRRYPSGEERCI 84 Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 ACKLCEAICPAQAITIE+ R G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNF Sbjct: 85 ACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNF 143 Query: 125 EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 EFATET +EL Y+KE+LLNNGDRWE+EI N+ D YR Sbjct: 144 EFATETHEELLYNKEKLLNNGDRWEAEIAANLQADFLYR 182 >gi|296283848|ref|ZP_06861846.1| NADH dehydrogenase subunit I [Citromicrobium bathyomarinum JL354] Length = 161 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 113/162 (69%), Positives = 125/162 (77%), Gaps = 1/162 (0%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 + L EFV A L L+Y FK K TINYP+EK SPRFRGEHALRRYPNGEE Sbjct: 1 MSIAQTIKAFTLYEFVKAHALTLKYLFKPKVTINYPYEKNPISPRFRGEHALRRYPNGEE 60 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLCEA+CPAQAITIES PR G+RRT RYDIDM KCIYCG CQEACPVDAIVEG Sbjct: 61 RCIACKLCEAVCPAQAITIESEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 119 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 PNFE++TETR+EL YDK +LL NGD+WE I N+ D+PYR Sbjct: 120 PNFEYSTETREELLYDKAKLLANGDKWERAIAANLEADAPYR 161 >gi|319898890|ref|YP_004158983.1| NADH dehydrogenase I chain I [Bartonella clarridgeiae 73] gi|319402854|emb|CBI76405.1| NADH dehydrogenase I chain I [Bartonella clarridgeiae 73] Length = 163 Score = 182 bits (463), Expect = 1e-44, Method: Composition-based stats. Identities = 127/163 (77%), Positives = 137/163 (84%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M L L EFV AFFL +R FF K TINYP+EKG S RFRGEHALRRYPNGE Sbjct: 1 MSSLIQAAKSLLLLEFVSAFFLAMRQFFAPKPTINYPYEKGFVSARFRGEHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE+GPR +DGTRRT+RYDIDM+KCIYCG CQEACPVDAIVE Sbjct: 61 ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTIRYDIDMVKCIYCGFCQEACPVDAIVE 120 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEFATE R+ELYYDKE+LLNNGDRWE EI RNI+ D+PYR Sbjct: 121 GPNFEFATEMREELYYDKEKLLNNGDRWEREIARNILIDAPYR 163 >gi|258576549|ref|XP_002542456.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Uncinocarpus reesii 1704] gi|237902722|gb|EEP77123.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Uncinocarpus reesii 1704] Length = 232 Score = 182 bits (462), Expect = 1e-44, Method: Composition-based stats. Identities = 104/162 (64%), Positives = 119/162 (73%), Gaps = 1/162 (0%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 F + E ++ L FF+ TI YPFEKG SPRFRGEHALRRYP+GEE Sbjct: 72 STLDKAGKFFLMTELFRGMYVVLEQFFRPPYTIYYPFEKGPISPRFRGEHALRRYPSGEE 131 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLCEAICPAQAITIE+ R DG+RRT RYDIDM KCIYCG CQE+CPVDAIVE Sbjct: 132 RCIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQESCPVDAIVES 190 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 PN E+ATETR+EL Y+KE+LL NGD+WE E+ D+PYR Sbjct: 191 PNAEYATETREELLYNKEKLLANGDKWEPELAAVARADAPYR 232 >gi|326919862|ref|XP_003206196.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial-like [Meleagris gallopavo] Length = 209 Score = 182 bits (462), Expect = 1e-44, Method: Composition-based stats. Identities = 112/164 (68%), Positives = 124/164 (75%), Gaps = 2/164 (1%) Query: 1 MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59 M+ I L E + L Y F+ TINYPFEKG SPRFRGEHALRRYP+G Sbjct: 47 MKSITDRAAQTLLWTELFRGLAMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 106 Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 EERCIACKLCEAICPAQAITIE+ PR G+RRT RYDIDM KCIYCG CQEACPVDAIV Sbjct: 107 EERCIACKLCEAICPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 165 Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 EGPNFEF+TET +EL Y+KE+LLNNGD+WE+EI NI D YR Sbjct: 166 EGPNFEFSTETHEELLYNKEKLLNNGDKWEAEIAANIQADYLYR 209 >gi|145616212|ref|XP_360940.2| hypothetical protein MGG_03483 [Magnaporthe oryzae 70-15] gi|145009964|gb|EDJ94620.1| hypothetical protein MGG_03483 [Magnaporthe oryzae 70-15] Length = 229 Score = 182 bits (462), Expect = 1e-44, Method: Composition-based stats. Identities = 104/155 (67%), Positives = 120/155 (77%), Gaps = 1/155 (0%) Query: 9 SFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKL 68 + L E ++ L FF+ TI YPFEKG SPRFRGEHALRRYP+GEERCIACKL Sbjct: 76 KYFLLSEMGRGMYVLLEQFFRPPYTIFYPFEKGPISPRFRGEHALRRYPSGEERCIACKL 135 Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 CEA+CPAQAITIE+ R G+RRT RYDIDM KCIYCG CQE+CPVDAIVE PN E+AT Sbjct: 136 CEAVCPAQAITIEAEERMD-GSRRTTRYDIDMTKCIYCGFCQESCPVDAIVESPNAEYAT 194 Query: 129 ETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 ETR+EL Y+KE+LL+NGD+WE E+ I DSPYR Sbjct: 195 ETREELLYNKEKLLSNGDKWEPELAATIRADSPYR 229 >gi|310791703|gb|EFQ27230.1| NADH-quinone oxidoreductase [Glomerella graminicola M1.001] Length = 226 Score = 182 bits (462), Expect = 1e-44, Method: Composition-based stats. Identities = 103/162 (63%), Positives = 120/162 (74%), Gaps = 1/162 (0%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 + L E ++ + FF+ TI YPFEKG SPRFRGEHALRRYP+GEE Sbjct: 66 STLNKLGRYFLLSEMARGMYVLMEQFFRPPYTIYYPFEKGPISPRFRGEHALRRYPSGEE 125 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLCEAICPAQAITIE+ R G+RRT RYDIDM KCIYCG CQE+CPVDAIVE Sbjct: 126 RCIACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQESCPVDAIVES 184 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 PN E+ATETR+EL Y+KE+LL+NGD+WE E+ I D+PYR Sbjct: 185 PNAEYATETREELLYNKEKLLSNGDKWEPELAAVIRADAPYR 226 >gi|163850509|ref|YP_001638552.1| NADH dehydrogenase subunit I [Methylobacterium extorquens PA1] gi|218529206|ref|YP_002420022.1| NADH dehydrogenase subunit I [Methylobacterium chloromethanicum CM4] gi|240137574|ref|YP_002962045.1| NADH-quinone oxidoreductase subunit I (NADH dehydrogenase I subunit I) [Methylobacterium extorquens AM1] gi|254560045|ref|YP_003067140.1| NADH-quinone oxidoreductase subunit I [Methylobacterium extorquens DM4] gi|226737399|sp|A9W1M5|NUOI_METEP RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|254772593|sp|B7KQ58|NUOI_METC4 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|163662114|gb|ABY29481.1| NADH-quinone oxidoreductase, chain I [Methylobacterium extorquens PA1] gi|218521509|gb|ACK82094.1| NADH-quinone oxidoreductase, chain I [Methylobacterium chloromethanicum CM4] gi|240007542|gb|ACS38768.1| NADH-quinone oxidoreductase subunit I (NADH dehydrogenase I subunit I) [Methylobacterium extorquens AM1] gi|254267323|emb|CAX23155.1| NADH-quinone oxidoreductase subunit I (NADH dehydrogenase I subunit I) [Methylobacterium extorquens DM4] Length = 162 Score = 182 bits (462), Expect = 1e-44, Method: Composition-based stats. Identities = 123/163 (75%), Positives = 135/163 (82%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M+ L LKEFV F L ++YFFK K TINYPFE G PRFRGEHALRRYPNGE Sbjct: 1 MK-LDQVARSLLLKEFVSGFVLAMKYFFKPKATINYPFEMGHRGPRFRGEHALRRYPNGE 59 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE+GPR +DGTRRT RYDIDM+KCIYCG+CQEACPVDAIVE Sbjct: 60 ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGMCQEACPVDAIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEF+ ETR+EL YDK++LL NGDRWE EI RNI D+PYR Sbjct: 120 GPNFEFSVETREELLYDKQKLLENGDRWEREIARNIAVDAPYR 162 >gi|259419188|ref|ZP_05743105.1| NADH-quinone oxidoreductase, i subunit [Silicibacter sp. TrichCH4B] gi|259345410|gb|EEW57264.1| NADH-quinone oxidoreductase, i subunit [Silicibacter sp. TrichCH4B] Length = 164 Score = 182 bits (462), Expect = 1e-44, Method: Composition-based stats. Identities = 114/158 (72%), Positives = 130/158 (82%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 + L++ F L L+YFF K T+NYP EKG SPRFRGEHALRRYPNGEERCIA Sbjct: 8 RAAKYFLLQDVWQGFKLGLKYFFAPKATLNYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEAICPAQAITI++ PR DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE Sbjct: 68 CKLCEAICPAQAITIDAEPR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FATETR+EL+YDK++LL NG+RWE+EI RN+ D+PYR Sbjct: 127 FATETREELFYDKDKLLANGERWEAEIARNLELDAPYR 164 >gi|149184627|ref|ZP_01862945.1| NADH dehydrogenase subunit I [Erythrobacter sp. SD-21] gi|148831947|gb|EDL50380.1| NADH dehydrogenase subunit I [Erythrobacter sp. SD-21] Length = 161 Score = 182 bits (462), Expect = 1e-44, Method: Composition-based stats. Identities = 116/156 (74%), Positives = 127/156 (81%), Gaps = 1/156 (0%) Query: 8 VSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACK 67 + L EFV A L L+YFFK K TINYPFEK SPRFRGEHALRRYPNGEERCIACK Sbjct: 7 IKSFTLWEFVKAHALTLKYFFKPKVTINYPFEKNPLSPRFRGEHALRRYPNGEERCIACK 66 Query: 68 LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 LCEA+CPAQAITIES PR DG+RRT RYDIDM KCIYCG CQEACPVDA+VEGPNFE+A Sbjct: 67 LCEAVCPAQAITIESEPR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAVVEGPNFEYA 125 Query: 128 TETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 TETR+EL YDK +LL NGD+WE I N+ D+PYR Sbjct: 126 TETREELLYDKAKLLANGDKWERAIAANLEADAPYR 161 >gi|58261400|ref|XP_568110.1| hypothetical protein [Cryptococcus neoformans var. neoformans JEC21] gi|134115557|ref|XP_773492.1| hypothetical protein CNBI1060 [Cryptococcus neoformans var. neoformans B-3501A] gi|50256118|gb|EAL18845.1| hypothetical protein CNBI1060 [Cryptococcus neoformans var. neoformans B-3501A] gi|57230192|gb|AAW46593.1| conserved hypothetical protein [Cryptococcus neoformans var. neoformans JEC21] Length = 273 Score = 182 bits (462), Expect = 1e-44, Method: Composition-based stats. Identities = 106/157 (67%), Positives = 118/157 (75%), Gaps = 1/157 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 LFL E V ++ L FF+ TI YPFEKG S RFRGEHALRRYPNGEERC Sbjct: 77 IDKASQILFLTEIVRGMWVVLEQFFRPPYTIMYPFEKGPLSARFRGEHALRRYPNGEERC 136 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAITIES R DG+RRT RYDIDM KCIYCG CQEACPVDAIVE N Sbjct: 137 IACKLCEAICPAQAITIESEAR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVETQN 195 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDS 160 EF+TETR+EL Y+KE+LL NGDR E+EI N+ ++ Sbjct: 196 QEFSTETREELLYNKEKLLLNGDRAEAEIAANLQSEH 232 >gi|240849392|ref|NP_001155795.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondri [Acyrthosiphon pisum] gi|239789288|dbj|BAH71275.1| ACYPI009382 [Acyrthosiphon pisum] Length = 206 Score = 182 bits (462), Expect = 1e-44, Method: Composition-based stats. Identities = 111/159 (69%), Positives = 125/159 (78%), Gaps = 1/159 (0%) Query: 5 RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64 +S+ F+ E + L +FFK TINYPFEKG SPRFRGEHALRRYP+GEERCI Sbjct: 49 DQAISYAFVTELCRGAAVSLAHFFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEERCI 108 Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 ACKLCEAICPAQAITIE+ R G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNF Sbjct: 109 ACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNF 167 Query: 125 EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E++TET +EL Y+KE+LLNNGD+WESEI NI D YR Sbjct: 168 EYSTETHEELLYNKEKLLNNGDKWESEIAANIHADHLYR 206 >gi|145355484|ref|XP_001421991.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144582230|gb|ABP00285.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 167 Score = 182 bits (462), Expect = 1e-44, Method: Composition-based stats. Identities = 111/161 (68%), Positives = 127/161 (78%), Gaps = 1/161 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 + + L L E + L L+YFF K TINYPFEKG SPRFRGEHALRRYP GEER Sbjct: 8 VLDASAKTLVLTELLRGMSLTLKYFFDKKVTINYPFEKGPLSPRFRGEHALRRYPTGEER 67 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEAICPAQAITIE+ R DG+RRT RYDIDM KCI+CG CQEACPVDAIVEGP Sbjct: 68 CIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIFCGFCQEACPVDAIVEGP 126 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 NFE+AT + +EL YDKE+LL+NGDRWE EI RN+ +++ YR Sbjct: 127 NFEYATFSHEELLYDKEKLLSNGDRWEKEIARNLQSEAMYR 167 >gi|89053678|ref|YP_509129.1| NADH dehydrogenase subunit I [Jannaschia sp. CCS1] gi|115502532|sp|Q28T58|NUOI_JANSC RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|88863227|gb|ABD54104.1| NADH dehydrogenase subunit I [Jannaschia sp. CCS1] Length = 164 Score = 182 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 116/158 (73%), Positives = 128/158 (81%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 + L +F F L ++YFF K TINYP EKG SPRFRGEHALRRYPNGEERCIA Sbjct: 8 RAAKYFLLADFFKGFKLGMKYFFAPKVTINYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEAICPAQAITI++ PR DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE Sbjct: 68 CKLCEAICPAQAITIDAEPR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FATETR+ELYYDKE+LL NG+RWES I N+ D+PYR Sbjct: 127 FATETREELYYDKEKLLANGERWESAIAHNLELDAPYR 164 >gi|163741480|ref|ZP_02148871.1| NADH dehydrogenase subunit I [Phaeobacter gallaeciensis 2.10] gi|161385214|gb|EDQ09592.1| NADH dehydrogenase subunit I [Phaeobacter gallaeciensis 2.10] Length = 164 Score = 182 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 115/158 (72%), Positives = 132/158 (83%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 + L++F F L L+YFF K T+NYP EKG SPRFRGEHALRRYPNGEERCIA Sbjct: 8 RAAKYFLLQDFWVGFKLGLKYFFAPKATLNYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEA+CPAQAITI++ PR DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE Sbjct: 68 CKLCEAVCPAQAITIDAEPR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FATETR+EL+YDKE+LL+NG+RWE+EI RN+ D+PYR Sbjct: 127 FATETREELFYDKEKLLSNGERWEAEIARNLELDAPYR 164 >gi|281353400|gb|EFB28984.1| hypothetical protein PANDA_010241 [Ailuropoda melanoleuca] Length = 174 Score = 182 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 110/164 (67%), Positives = 125/164 (76%), Gaps = 2/164 (1%) Query: 1 MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59 M+ + L E V + L Y F+ TINYPFEKG SPRFRGEHALRRYP+G Sbjct: 12 MKSVTDRAAQTLLWTELVRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 71 Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 EERCIACKLCEA+CPAQAITIE+ PR G+RRT RYDIDM KCIYCG CQEACPVDAIV Sbjct: 72 EERCIACKLCEAVCPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 130 Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 EGPNFEF+TET +EL Y+KE+LL+NGD+WE+EI NI D YR Sbjct: 131 EGPNFEFSTETHEELLYNKEKLLSNGDKWEAEIAANIQADFLYR 174 >gi|281205874|gb|EFA80063.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Polysphondylium pallidum PN500] Length = 179 Score = 182 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 113/162 (69%), Positives = 126/162 (77%), Gaps = 1/162 (0%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 I + FL E + ++ + YFF+ K TINYPFEKG SPRFRGEHALRRYP+GEE Sbjct: 19 NIIDETANTFFLSEIMVGLYITMGYFFRKKATINYPFEKGPLSPRFRGEHALRRYPSGEE 78 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLCEAICPAQAITIE+ PR G+RRT RYDIDM KCIYCG CQEACPVDAIVEG Sbjct: 79 RCIACKLCEAICPAQAITIEAEPRKD-GSRRTTRYDIDMTKCIYCGYCQEACPVDAIVEG 137 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 PNFEF TE+R EL Y+KE+LL NGDRWE+EI NI D YR Sbjct: 138 PNFEFTTESRIELLYNKEKLLANGDRWETEIAANIAADYLYR 179 >gi|84516725|ref|ZP_01004083.1| NADH dehydrogenase subunit I [Loktanella vestfoldensis SKA53] gi|84509193|gb|EAQ05652.1| NADH dehydrogenase subunit I [Loktanella vestfoldensis SKA53] Length = 166 Score = 182 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 113/158 (71%), Positives = 128/158 (81%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 + L++F F L ++YFF K T+NYP EKG SPRFRGEHALRRY NGEERCIA Sbjct: 10 RAAKYFLLQDFWAGFKLGMKYFFAPKATLNYPHEKGPLSPRFRGEHALRRYANGEERCIA 69 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEA+CPAQAITI++ PR G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE Sbjct: 70 CKLCEAVCPAQAITIDAEPRDD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 128 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 F+TETR+ELYYDK +LL NGDRWESEI RN+ D+PYR Sbjct: 129 FSTETREELYYDKAKLLENGDRWESEIARNLALDAPYR 166 >gi|163738809|ref|ZP_02146223.1| NADH-quinone oxidoreductase, chain I [Phaeobacter gallaeciensis BS107] gi|161388137|gb|EDQ12492.1| NADH-quinone oxidoreductase, chain I [Phaeobacter gallaeciensis BS107] Length = 164 Score = 182 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 114/158 (72%), Positives = 132/158 (83%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 + L++F F L L+YFF K T+NYP EKG SPRFRGEHALRRYPNGEERCIA Sbjct: 8 RAAKYFLLQDFWVGFKLGLKYFFAPKATLNYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEA+CPAQAITI++ PR DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE Sbjct: 68 CKLCEAVCPAQAITIDAEPR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FATETR+EL+YDK++LL+NG+RWE+EI RN+ D+PYR Sbjct: 127 FATETREELFYDKDKLLSNGERWEAEIARNLELDAPYR 164 >gi|84686443|ref|ZP_01014337.1| NADH dehydrogenase subunit I [Maritimibacter alkaliphilus HTCC2654] gi|84665626|gb|EAQ12102.1| NADH dehydrogenase subunit I [Rhodobacterales bacterium HTCC2654] Length = 164 Score = 182 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 114/158 (72%), Positives = 133/158 (84%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 + L +++ F L ++YFFK K T+NYP EKG SPRFRGEHALRRYPNGEERCIA Sbjct: 8 RAAKYFLLTDWIKGFQLGIKYFFKPKATLNYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEAICPAQAITI++ PR DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE Sbjct: 68 CKLCEAICPAQAITIDAEPR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FATETR+EL+YDK++LL+NG+RWE+EI RN+ D+PYR Sbjct: 127 FATETREELFYDKDKLLDNGERWEAEIARNLELDAPYR 164 >gi|254488246|ref|ZP_05101451.1| NADH-quinone oxidoreductase chain i [Roseobacter sp. GAI101] gi|214045115|gb|EEB85753.1| NADH-quinone oxidoreductase chain i [Roseobacter sp. GAI101] Length = 164 Score = 182 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 111/158 (70%), Positives = 127/158 (80%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 + + L++F L +YFF K T+NYP EKG SPRFRGEHALRRY NGEERCIA Sbjct: 8 RHAKYFLLQDFYQGMKLGFKYFFAPKATLNYPHEKGPLSPRFRGEHALRRYANGEERCIA 67 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEA+CPAQAITI++ PR G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE Sbjct: 68 CKLCEAVCPAQAITIDAEPRDD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 F+TETR+ELYYDK +LL NGDRWE+EI RN+ D+PYR Sbjct: 127 FSTETREELYYDKAKLLENGDRWEAEIARNLELDAPYR 164 >gi|125776379|ref|XP_001359257.1| GA17794 [Drosophila pseudoobscura pseudoobscura] gi|195152209|ref|XP_002017029.1| GL21733 [Drosophila persimilis] gi|54639000|gb|EAL28402.1| GA17794 [Drosophila pseudoobscura pseudoobscura] gi|194112086|gb|EDW34129.1| GL21733 [Drosophila persimilis] Length = 217 Score = 182 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 110/161 (68%), Positives = 123/161 (76%), Gaps = 1/161 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 I + +F E F + L + FK TINYPFEKG SPRFRGEHALRRYP+GEER Sbjct: 58 ITDRAATSMFFGELFRGFGVTLAHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEER 117 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEAICPAQAITIE+ R G+RRT RYDIDM KCIYCG CQEACPVDAIVEGP Sbjct: 118 CIACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 176 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 NFEF+TET +EL Y+KE+LL NGD+WESEI N+ D YR Sbjct: 177 NFEFSTETHEELLYNKEKLLCNGDKWESEIASNLQADHLYR 217 >gi|219842412|gb|ACL37997.1| NADH dehydrogenase [Ochlerotatus taeniorhynchus] Length = 216 Score = 182 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 110/161 (68%), Positives = 121/161 (75%), Gaps = 1/161 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 I +F E + L + FK TINYPFEKG SPRFRGEHALRRYP+GEER Sbjct: 57 ITDRAAQTIFWTELFRGAAVTLAHIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEER 116 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEAICPAQAITIE+ R G+RRT RYDIDM KCIYCG CQEACPVDAIVEGP Sbjct: 117 CIACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 175 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 NFEF+TET +EL Y+KE+LL NGD+WESEI NI D YR Sbjct: 176 NFEFSTETHEELLYNKEKLLCNGDKWESEIASNINADYLYR 216 >gi|254454656|ref|ZP_05068093.1| NADH-quinone oxidoreductase chain i [Octadecabacter antarcticus 238] gi|198269062|gb|EDY93332.1| NADH-quinone oxidoreductase chain i [Octadecabacter antarcticus 238] Length = 164 Score = 182 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 114/158 (72%), Positives = 129/158 (81%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 + L +F F L +YFF K T+NYP EKG SPRFRGEHALRRYPNGEERCIA Sbjct: 8 RAAKYFLLADFAKGFRLGFKYFFAPKATLNYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEA+CPAQAITI++ PR G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE Sbjct: 68 CKLCEAVCPAQAITIDAEPRDD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 F+TETR+ELYYDKE+LL+NGDRWE+EI RN+ D+PYR Sbjct: 127 FSTETREELYYDKEKLLDNGDRWEAEIARNLEMDAPYR 164 >gi|73988225|ref|XP_852209.1| PREDICTED: similar to NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial precursor (Complex I-23KD) (CI-23KD) (TYKY subunit) [Canis familiaris] Length = 253 Score = 182 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 103/163 (63%), Positives = 121/163 (74%), Gaps = 2/163 (1%) Query: 1 MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59 M+ + L E + + L Y F+ TINYPFEKG SPRFRGEHALRRYP+G Sbjct: 91 MKSVMDRAAQTLLWTELIRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 150 Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 EERCIACKL EA+CPAQAITI++ PR G+RRT RYDI M KCIYCG CQEACPVDAIV Sbjct: 151 EERCIACKLHEAVCPAQAITIQAEPRAD-GSRRTTRYDIYMTKCIYCGFCQEACPVDAIV 209 Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPY 162 EGPNFEF+TET +EL Y+KE+LL+NGD+W +E+ NI D Y Sbjct: 210 EGPNFEFSTETHEELLYNKEKLLSNGDKWGAEVAANIQADYLY 252 >gi|66524760|ref|XP_623480.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial isoform 2 [Apis mellifera] Length = 201 Score = 182 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 110/162 (67%), Positives = 124/162 (76%), Gaps = 1/162 (0%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 + V+ F E + + + +FF TINYPFEKG SPRFRGEHALRRYP+GEE Sbjct: 41 KFLDEAVNRSFFLEIIRGLGITMSHFFTEPATINYPFEKGPLSPRFRGEHALRRYPSGEE 100 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLCEAICPAQAITIE+ R G+RRT RYDIDM KCIYCG CQEACPVDAIVEG Sbjct: 101 RCIACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 159 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 PNFEF+TET +EL Y+KE+LLNNGD+WESEI NI D YR Sbjct: 160 PNFEFSTETHEELLYNKEKLLNNGDKWESEIASNIHADYLYR 201 >gi|168008160|ref|XP_001756775.1| predicted protein [Physcomitrella patens subsp. patens] gi|162692013|gb|EDQ78372.1| predicted protein [Physcomitrella patens subsp. patens] Length = 161 Score = 182 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 115/162 (70%), Positives = 129/162 (79%), Gaps = 1/162 (0%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 + +V+ LFL E L L+YFF+ K TINYPFEKG SPRFRGEHALRRYP GEE Sbjct: 1 SVLDHSVNTLFLSEMARGMGLALKYFFEKKVTINYPFEKGPLSPRFRGEHALRRYPTGEE 60 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLCEA+CPAQAITIE+ R DG+RRT RYDIDM KCIYCG CQEACPVDAIVEG Sbjct: 61 RCIACKLCEAVCPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 119 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 PNFEF TET +EL YDKE+LL NGDRWE+EI N+ ++S YR Sbjct: 120 PNFEFTTETHEELLYDKEKLLENGDRWETEIAENLRSESLYR 161 >gi|83592898|ref|YP_426650.1| NADH dehydrogenase subunit I [Rhodospirillum rubrum ATCC 11170] gi|115502542|sp|Q2RU32|NUOI_RHORT RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|83575812|gb|ABC22363.1| NADH-quinone oxidoreductase, chain I [Rhodospirillum rubrum ATCC 11170] Length = 162 Score = 182 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 111/163 (68%), Positives = 121/163 (74%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + L L E V L RY K K TINYPFEKG SPRFRGEHALRRY NGE Sbjct: 1 MTSIVRTLRSLTLWELVSGMALTFRYMLKPKVTINYPFEKGYLSPRFRGEHALRRYANGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE+ PR G+RRT RYDIDM KCIYCG C+EACPVDAIVE Sbjct: 61 ERCIACKLCEAICPAQAITIEAEPRTD-GSRRTTRYDIDMTKCIYCGFCEEACPVDAIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEFA ETR+EL Y+K +LL NGDRWE E+ + D+ YR Sbjct: 120 GPNFEFAAETREELLYNKAKLLANGDRWEPELALRLRKDAAYR 162 >gi|323138153|ref|ZP_08073226.1| NADH-quinone oxidoreductase, chain I [Methylocystis sp. ATCC 49242] gi|322396615|gb|EFX99143.1| NADH-quinone oxidoreductase, chain I [Methylocystis sp. ATCC 49242] Length = 162 Score = 181 bits (460), Expect = 2e-44, Method: Composition-based stats. Identities = 130/163 (79%), Positives = 136/163 (83%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 MR LFL EFVGAF+L +RYFFK K TINYP EK SPRFRGEHALRRYPNGE Sbjct: 1 MR-LDQAAKSLFLSEFVGAFWLSMRYFFKPKATINYPHEKNPISPRFRGEHALRRYPNGE 59 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE+GPR +DGTRRT RYDIDM+KCIYCG CQEACPVDAIVE Sbjct: 60 ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGYCQEACPVDAIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPN EFATETR+ELYY KERLL NG RWE EI RNI DSPYR Sbjct: 120 GPNQEFATETREELYYTKERLLENGARWEREIARNIAMDSPYR 162 >gi|254512016|ref|ZP_05124083.1| NADH dehydrogenase i, i subunit [Rhodobacteraceae bacterium KLH11] gi|221535727|gb|EEE38715.1| NADH dehydrogenase i, i subunit [Rhodobacteraceae bacterium KLH11] Length = 164 Score = 181 bits (460), Expect = 2e-44, Method: Composition-based stats. Identities = 116/158 (73%), Positives = 131/158 (82%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 + L++F L L+YFF K TINYP EKG SPRFRGEHALRRYPNGEERCIA Sbjct: 8 RAAKYFLLQDFWVGMKLGLKYFFSPKATINYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEAICPAQAITI++ PR DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE Sbjct: 68 CKLCEAICPAQAITIDAEPR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FATETR+EL+YDKE+LL+NG+RWE+EI RN+ D+PYR Sbjct: 127 FATETREELFYDKEKLLSNGERWEAEIARNLEMDAPYR 164 >gi|167534830|ref|XP_001749090.1| hypothetical protein [Monosiga brevicollis MX1] gi|163772514|gb|EDQ86165.1| predicted protein [Monosiga brevicollis MX1] Length = 204 Score = 181 bits (460), Expect = 2e-44, Method: Composition-based stats. Identities = 110/160 (68%), Positives = 126/160 (78%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + + LF E L LRYFFK T+ YPFEKG SPRFRGEHALRRYP+GEERC Sbjct: 46 IESSANQLFATEIARGLGLTLRYFFKKPATVYYPFEKGPLSPRFRGEHALRRYPSGEERC 105 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEA+CPAQAITIE+ PR DG+RRT RYDIDM KCI+CG CQEACPVDAIVEGPN Sbjct: 106 IACKLCEAVCPAQAITIETEPR-EDGSRRTTRYDIDMTKCIFCGFCQEACPVDAIVEGPN 164 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FE++TET QEL Y+KE+LL+NGD+WE EI +NI + YR Sbjct: 165 FEYSTETHQELLYNKEKLLSNGDKWEVEIQKNIEAEFLYR 204 >gi|46126979|ref|XP_388043.1| NUIM_NEUCR NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial precursor (Complex I-23KD) (CI-23KD) [Gibberella zeae PH-1] Length = 213 Score = 181 bits (460), Expect = 2e-44, Method: Composition-based stats. Identities = 103/162 (63%), Positives = 120/162 (74%), Gaps = 1/162 (0%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 F + E ++ L +F+ TI YPFEKG SPRFRGEHALRRYP+GEE Sbjct: 53 STLDRMGKFFLMTEMARGMYVLLEQYFRPPYTIYYPFEKGPISPRFRGEHALRRYPSGEE 112 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLCEAICPAQAITIE+ R G+RRT +YDIDM KCIYCG CQE+CPVDAIVE Sbjct: 113 RCIACKLCEAICPAQAITIEAEERAD-GSRRTTKYDIDMTKCIYCGFCQESCPVDAIVES 171 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 PN E+ATETR+EL Y+KE+LL+NGD+WE E+ I DSPYR Sbjct: 172 PNAEYATETREELLYNKEKLLSNGDKWEPELAAAIRADSPYR 213 >gi|326387453|ref|ZP_08209062.1| NADH dehydrogenase subunit I [Novosphingobium nitrogenifigens DSM 19370] gi|326208109|gb|EGD58917.1| NADH dehydrogenase subunit I [Novosphingobium nitrogenifigens DSM 19370] Length = 161 Score = 181 bits (460), Expect = 2e-44, Method: Composition-based stats. Identities = 112/158 (70%), Positives = 127/158 (80%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 V L EFV A +L L+YFF+ K T+NYPFEK SPRFRGEHALRRYPNGEERCIA Sbjct: 5 QIVKTWTLWEFVKAHWLTLKYFFRPKATVNYPFEKNPISPRFRGEHALRRYPNGEERCIA 64 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEA+CPAQAITIE+ PR G+RRT RYDIDM KCI+CG CQEACPVDA+VEGPNFE Sbjct: 65 CKLCEAVCPAQAITIEAEPRDD-GSRRTTRYDIDMTKCIFCGFCQEACPVDAVVEGPNFE 123 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 +ATETR+EL YDK +LL NGD+WE I N+ D+PYR Sbjct: 124 YATETREELLYDKAKLLANGDKWERAIAANLEADAPYR 161 >gi|159043871|ref|YP_001532665.1| NADH dehydrogenase subunit I [Dinoroseobacter shibae DFL 12] gi|226737390|sp|A8LIV0|NUOI_DINSH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|157911631|gb|ABV93064.1| NADH-quinone oxidoreductase [Dinoroseobacter shibae DFL 12] Length = 164 Score = 181 bits (460), Expect = 2e-44, Method: Composition-based stats. Identities = 115/158 (72%), Positives = 130/158 (82%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 + L +F F L L+YFFK K T+ YP EKG SPRFRGEHALRRYPNGEERCIA Sbjct: 8 RAAKYFLLFDFFAGFKLGLKYFFKPKATLAYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEAICPAQAITI++ PR G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE Sbjct: 68 CKLCEAICPAQAITIDAEPRDD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FATETR+EL+YDKE+LL+NG+RWE+EI RN+ D+PYR Sbjct: 127 FATETREELFYDKEKLLDNGERWEAEIARNLELDAPYR 164 >gi|84502622|ref|ZP_01000741.1| NADH dehydrogenase I, I subunit [Oceanicola batsensis HTCC2597] gi|84389017|gb|EAQ01815.1| NADH dehydrogenase I, I subunit [Oceanicola batsensis HTCC2597] Length = 164 Score = 181 bits (460), Expect = 2e-44, Method: Composition-based stats. Identities = 115/158 (72%), Positives = 129/158 (81%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 + L + F + L+YFFK K T+NYP EKG SPRFRGEHALRRYPNGEERCIA Sbjct: 8 RAAKYFLLWDVWQGFKMGLKYFFKPKATVNYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEAICPAQAITI++ PR DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE Sbjct: 68 CKLCEAICPAQAITIDAEPR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FATETR+ELYYDK +LL NG+RWE+EI RN+ D+PYR Sbjct: 127 FATETREELYYDKAKLLANGERWEAEIARNLEIDAPYR 164 >gi|126729567|ref|ZP_01745380.1| NADH dehydrogenase subunit I [Sagittula stellata E-37] gi|126709686|gb|EBA08739.1| NADH dehydrogenase subunit I [Sagittula stellata E-37] Length = 164 Score = 181 bits (460), Expect = 2e-44, Method: Composition-based stats. Identities = 113/158 (71%), Positives = 129/158 (81%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 + L +F+ F L ++YFF K T+NYP EKG SPRFRGEHALRRYPNGEERCIA Sbjct: 8 RAAKYFLLADFMKGFQLGMKYFFAPKATVNYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEAICPAQAITI++ PR G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE Sbjct: 68 CKLCEAICPAQAITIDAEPRDD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 F+TETR+EL+YDK +LL NGDRWE+EI RN+ D+PYR Sbjct: 127 FSTETREELFYDKAKLLENGDRWEAEIARNLELDAPYR 164 >gi|66818078|ref|XP_642732.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Dictyostelium discoideum AX4] gi|60470829|gb|EAL68801.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Dictyostelium discoideum AX4] Length = 210 Score = 181 bits (459), Expect = 3e-44, Method: Composition-based stats. Identities = 112/162 (69%), Positives = 126/162 (77%), Gaps = 1/162 (0%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 ++ + F+ E + ++ + YFF+ K TINYPFEKG SPRFRGEHALRRYP GEE Sbjct: 50 KVVDDAATAFFMTEIMWGLYITMGYFFRKKCTINYPFEKGPLSPRFRGEHALRRYPTGEE 109 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLCEAICPAQAITIE+ PR G+RRT RYDIDM KCIYCG CQEACPVDAIVEG Sbjct: 110 RCIACKLCEAICPAQAITIEAEPRQD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 168 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 PNFEF TETR EL Y+KE+LL NGDRWE+EI NI D YR Sbjct: 169 PNFEFTTETRLELLYNKEKLLANGDRWETEIASNIAADYLYR 210 >gi|49475650|ref|YP_033691.1| NADH dehydrogenase subunit I [Bartonella henselae str. Houston-1] gi|81696159|sp|Q6G396|NUOI_BARHE RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|49238457|emb|CAF27685.1| NADH dehydrogenase I, I subunit [Bartonella henselae str. Houston-1] Length = 163 Score = 181 bits (459), Expect = 3e-44, Method: Composition-based stats. Identities = 126/163 (77%), Positives = 137/163 (84%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M L L EF+ AFFL +R FF K TINYP+EKG S RFRGEHALRRYPNGE Sbjct: 1 MLGLIQAAKSLLLLEFMSAFFLAMRQFFSPKPTINYPYEKGVVSQRFRGEHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPV+AIVE Sbjct: 61 ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVEAIVE 120 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEFATETR+ELYYDKE+LL NGDRWE EI RNI+ D+PYR Sbjct: 121 GPNFEFATETREELYYDKEKLLMNGDRWEREIARNILMDAPYR 163 >gi|149202658|ref|ZP_01879630.1| NADH dehydrogenase subunit I [Roseovarius sp. TM1035] gi|149143940|gb|EDM31974.1| NADH dehydrogenase subunit I [Roseovarius sp. TM1035] Length = 164 Score = 181 bits (459), Expect = 3e-44, Method: Composition-based stats. Identities = 116/158 (73%), Positives = 128/158 (81%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 + L +F F L L+YFF K T+NYP EKG SPRFRGEHALRRYPNGEERCIA Sbjct: 8 RAAGYFLLSDFFKGFKLGLKYFFAPKATLNYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEAICPAQAITI++ PR G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE Sbjct: 68 CKLCEAICPAQAITIDAEPRDD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FATETR+EL+YDK RLL NGDRWE+EI RN+ D+PYR Sbjct: 127 FATETREELFYDKARLLANGDRWEAEIARNLEMDAPYR 164 >gi|254469568|ref|ZP_05082973.1| NADH-quinone oxidoreductase subunit i [Pseudovibrio sp. JE062] gi|211961403|gb|EEA96598.1| NADH-quinone oxidoreductase subunit i [Pseudovibrio sp. JE062] Length = 153 Score = 181 bits (459), Expect = 3e-44, Method: Composition-based stats. Identities = 127/153 (83%), Positives = 137/153 (89%) Query: 11 LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70 + LKEFV AFFL +RYFFK K TINYPFEKG SPRFRGEHALRRYPNGEERCIACKLCE Sbjct: 1 MLLKEFVSAFFLAMRYFFKPKPTINYPFEKGPVSPRFRGEHALRRYPNGEERCIACKLCE 60 Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 AICPAQAITIE+GPR +DGTRRT RYDIDM KCIYCG CQEACPVDAIVEGPNFEFATET Sbjct: 61 AICPAQAITIEAGPRRNDGTRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATET 120 Query: 131 RQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 R+EL+YDK++LL NG+RWE EI RNI D+PYR Sbjct: 121 REELFYDKDKLLANGERWEREIARNIELDAPYR 153 >gi|114771827|ref|ZP_01449220.1| NADH dehydrogenase subunit I [alpha proteobacterium HTCC2255] gi|114547643|gb|EAU50534.1| NADH dehydrogenase subunit I [alpha proteobacterium HTCC2255] Length = 163 Score = 181 bits (458), Expect = 3e-44, Method: Composition-based stats. Identities = 113/158 (71%), Positives = 129/158 (81%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 + L +F L L+YFFK K T+NYP EKG SPRFRGEHALRRY NGEERCIA Sbjct: 7 RAGKYFLLADFFIGMKLGLKYFFKPKATLNYPHEKGPLSPRFRGEHALRRYANGEERCIA 66 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEA+CPAQAITI++ PR DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE Sbjct: 67 CKLCEAVCPAQAITIDAEPR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 125 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FATETR+EL+Y+K +LL+NGDRWE+EI RN+ D+PYR Sbjct: 126 FATETREELFYNKNKLLSNGDRWEAEISRNLELDAPYR 163 >gi|83942660|ref|ZP_00955121.1| NADH dehydrogenase subunit I [Sulfitobacter sp. EE-36] gi|83846753|gb|EAP84629.1| NADH dehydrogenase subunit I [Sulfitobacter sp. EE-36] Length = 164 Score = 181 bits (458), Expect = 4e-44, Method: Composition-based stats. Identities = 111/158 (70%), Positives = 130/158 (82%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 + + L++F L ++Y FK K TINYP EKG SPRFRGEHALRRYPNGEERCIA Sbjct: 8 RHAKYFLLQDFYQGLKLGIKYMFKPKATINYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEA+CPAQAITI++ PR G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE Sbjct: 68 CKLCEAVCPAQAITIDAEPRDD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 F+TETR+EL+YDK +LL+NG+RWE+EI RN+ D+PYR Sbjct: 127 FSTETREELFYDKAKLLDNGERWEAEIARNLELDAPYR 164 >gi|164663359|ref|XP_001732801.1| hypothetical protein MGL_0576 [Malassezia globosa CBS 7966] gi|159106704|gb|EDP45587.1| hypothetical protein MGL_0576 [Malassezia globosa CBS 7966] Length = 245 Score = 181 bits (458), Expect = 4e-44, Method: Composition-based stats. Identities = 104/163 (63%), Positives = 115/163 (70%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 + E ++ L FF+ TI YPFEKG SPRFRGEHALRRYP GE Sbjct: 84 LSSLEKAGRLFLFTEMARGLWMTLENFFRPPYTIQYPFEKGPVSPRFRGEHALRRYPTGE 143 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPA AITIES PR G+RRT RYDIDM KCIYCG+CQEACPVDAIVE Sbjct: 144 ERCIACKLCEAICPALAITIESEPRMD-GSRRTTRYDIDMTKCIYCGMCQEACPVDAIVE 202 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 EFATETR+EL+Y+KE+LL NGDR E+EI NI D R Sbjct: 203 TQTLEFATETREELFYNKEKLLANGDRAEAEIASNIYADHLMR 245 >gi|260426977|ref|ZP_05780956.1| NADH-quinone oxidoreductase subunit i [Citreicella sp. SE45] gi|260421469|gb|EEX14720.1| NADH-quinone oxidoreductase subunit i [Citreicella sp. SE45] Length = 164 Score = 181 bits (458), Expect = 4e-44, Method: Composition-based stats. Identities = 114/158 (72%), Positives = 131/158 (82%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 + L +F+ F L LRYFF K T+NYP EKG SPRFRGEHALRRYPNGEERCIA Sbjct: 8 RAAKYFLLADFIKGFQLGLRYFFAPKPTLNYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEAICPAQAITI++ PR G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE Sbjct: 68 CKLCEAICPAQAITIDAEPRDD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 F+TETR+EL+YDK++LL+NG+RWE+EI RN+ D+PYR Sbjct: 127 FSTETREELFYDKQKLLDNGERWEAEIARNLELDAPYR 164 >gi|47215704|emb|CAG04788.1| unnamed protein product [Tetraodon nigroviridis] Length = 212 Score = 181 bits (458), Expect = 4e-44, Method: Composition-based stats. Identities = 112/164 (68%), Positives = 123/164 (75%), Gaps = 2/164 (1%) Query: 1 MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59 MR I + L E + L Y F+ TINYPFEKG SPRFRGEHALRRYPNG Sbjct: 50 MRSITDRAATTLLWTELFRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPNG 109 Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 EERCIACKLCEAICPAQAITIE+ R G+RRT RYDIDM KCIYCG CQEACPVDAIV Sbjct: 110 EERCIACKLCEAICPAQAITIEAETRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 168 Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 +GPNFEF+TET +EL Y+KE+LLNNGD+WE EI NI D YR Sbjct: 169 QGPNFEFSTETHEELLYNKEKLLNNGDQWEVEISENIRADYLYR 212 >gi|188580277|ref|YP_001923722.1| NADH dehydrogenase subunit I [Methylobacterium populi BJ001] gi|226737400|sp|B1ZA38|NUOI_METPB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|179343775|gb|ACB79187.1| NADH-quinone oxidoreductase, chain I [Methylobacterium populi BJ001] Length = 162 Score = 180 bits (457), Expect = 4e-44, Method: Composition-based stats. Identities = 123/163 (75%), Positives = 135/163 (82%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M+ L LKEFV FFL ++YF K K TINYPFE G PRFRGEHALRRYPNGE Sbjct: 1 MK-LDQVARSLLLKEFVSGFFLAMKYFLKPKATINYPFEMGHRGPRFRGEHALRRYPNGE 59 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE+GPR +DGTRRT RYDIDM+KCIYCG+CQEACPVDAIVE Sbjct: 60 ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGMCQEACPVDAIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEF+ ETR+EL YDK++LL NGDRWE EI RNI D+PYR Sbjct: 120 GPNFEFSVETREELLYDKQKLLENGDRWEREIARNIAIDAPYR 162 >gi|256078647|ref|XP_002575606.1| NADH-ubiquinone oxidoreductase [Schistosoma mansoni] gi|238660848|emb|CAZ31839.1| NADH-ubiquinone oxidoreductase 1, chain, putative [Schistosoma mansoni] Length = 206 Score = 180 bits (457), Expect = 4e-44, Method: Composition-based stats. Identities = 108/160 (67%), Positives = 121/160 (75%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 F +L L + + L FK T+NYPFEKG SPRFRGEHALRRYP+GEERC Sbjct: 48 FENVTRWLILADILRGLRLTFGMIFKEPATLNYPFEKGPLSPRFRGEHALRRYPSGEERC 107 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAITIE+ PR G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPN Sbjct: 108 IACKLCEAICPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 166 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FE++TET +EL Y+KE+LL NGDRWE EI N+ D YR Sbjct: 167 FEYSTETHEELLYNKEKLLQNGDRWEVEISENLKADYVYR 206 >gi|319407259|emb|CBI80898.1| NADH dehydrogenase I chain I [Bartonella sp. 1-1C] Length = 163 Score = 180 bits (457), Expect = 5e-44, Method: Composition-based stats. Identities = 128/163 (78%), Positives = 138/163 (84%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M L L EF+ AFFL +R FF K TINYP+EKG SPRFRGEHALRRYPNGE Sbjct: 1 MSSLIQAAKSLLLLEFISAFFLAMRQFFSPKPTINYPYEKGCVSPRFRGEHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE+GPR +DGTRRT+RYDIDM+KCIYCG CQEACPVDAIVE Sbjct: 61 ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTIRYDIDMVKCIYCGFCQEACPVDAIVE 120 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEFATE R+ELYYDKE+LLNNGDRWE EI RNI+ DSPYR Sbjct: 121 GPNFEFATEMREELYYDKEKLLNNGDRWEREIARNILIDSPYR 163 >gi|110680455|ref|YP_683462.1| NADH dehydrogenase subunit I [Roseobacter denitrificans OCh 114] gi|115502543|sp|Q163R7|NUOI_ROSDO RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|109456571|gb|ABG32776.1| NADH-quinone oxidoreductase chain I [Roseobacter denitrificans OCh 114] Length = 164 Score = 180 bits (456), Expect = 6e-44, Method: Composition-based stats. Identities = 111/158 (70%), Positives = 129/158 (81%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 + L++F L ++YFF K T+NYP EKG SPRFRGEHALRRYPNGEERCIA Sbjct: 8 RAAKYFLLQDFWVGMKLGMKYFFAPKATLNYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEA+CPAQAITI++ PR G+RRT RYDIDM KCIYCG C+EACPVDAIVEGPNFE Sbjct: 68 CKLCEAVCPAQAITIDAEPRDD-GSRRTTRYDIDMTKCIYCGFCEEACPVDAIVEGPNFE 126 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 F+TETR+ELYYDK+RLL NG+RWE+EI RN+ D+PYR Sbjct: 127 FSTETREELYYDKDRLLANGERWEAEIARNLEMDAPYR 164 >gi|330805166|ref|XP_003290557.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Dictyostelium purpureum] gi|325079303|gb|EGC32909.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Dictyostelium purpureum] Length = 203 Score = 180 bits (456), Expect = 6e-44, Method: Composition-based stats. Identities = 112/162 (69%), Positives = 126/162 (77%), Gaps = 1/162 (0%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 ++ + FL E + ++ YFF+ K TINYPFEK SPRFRGEHALRRYP GEE Sbjct: 43 KVIDDAANSFFLTEIMWGMYITAGYFFRKKCTINYPFEKTPISPRFRGEHALRRYPTGEE 102 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLCEAICPAQAITIE+ PR DG+RRT RYDIDM KCIYCG CQEACPVDAIVEG Sbjct: 103 RCIACKLCEAICPAQAITIEAEPR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 161 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 PNFEF TETR EL Y+KE+LL NGDRWE+EI NI ++ YR Sbjct: 162 PNFEFTTETRIELLYNKEKLLANGDRWETEIASNIASEYLYR 203 >gi|148259940|ref|YP_001234067.1| NADH dehydrogenase subunit I [Acidiphilium cryptum JF-5] gi|326403106|ref|YP_004283187.1| NADH-quinone oxidoreductase subunit I [Acidiphilium multivorum AIU301] gi|146401621|gb|ABQ30148.1| NADH dehydrogenase subunit I [Acidiphilium cryptum JF-5] gi|325049967|dbj|BAJ80305.1| NADH-quinone oxidoreductase subunit I [Acidiphilium multivorum AIU301] Length = 163 Score = 180 bits (456), Expect = 6e-44, Method: Composition-based stats. Identities = 117/163 (71%), Positives = 129/163 (79%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M L E + L LRYFF K T+NYPFEK + SPRF+GEHALRRYPNGE Sbjct: 2 MARLDRIAHRFLLLEILSGLRLTLRYFFTRKATLNYPFEKNAISPRFKGEHALRRYPNGE 61 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE+ PR DG+RRT RYDIDM KCIYCGLC+EACPVDAIVE Sbjct: 62 ERCIACKLCEAICPAQAITIEAEPR-EDGSRRTTRYDIDMTKCIYCGLCEEACPVDAIVE 120 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEFATETR+EL YDKERLL NGDRWESE+ + + D+PYR Sbjct: 121 GPNFEFATETREELMYDKERLLANGDRWESELAKRLELDAPYR 163 >gi|85703194|ref|ZP_01034298.1| NADH dehydrogenase subunit I [Roseovarius sp. 217] gi|85672122|gb|EAQ26979.1| NADH dehydrogenase subunit I [Roseovarius sp. 217] Length = 164 Score = 180 bits (456), Expect = 6e-44, Method: Composition-based stats. Identities = 114/158 (72%), Positives = 128/158 (81%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 + L +F+ F L L+YFF K T+NYP EKG S RFRGEHALRRYPNGEERCIA Sbjct: 8 RAAGYFLLSDFIKGFRLGLKYFFAPKATLNYPHEKGPLSVRFRGEHALRRYPNGEERCIA 67 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEAICPAQAITI++ PR G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE Sbjct: 68 CKLCEAICPAQAITIDAEPRDD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FATETR+EL+YDK +LL NGDRWE+EI RN+ D+PYR Sbjct: 127 FATETREELFYDKAKLLANGDRWEAEIARNLEMDAPYR 164 >gi|163732050|ref|ZP_02139496.1| NADH dehydrogenase subunit I [Roseobacter litoralis Och 149] gi|161394348|gb|EDQ18671.1| NADH dehydrogenase subunit I [Roseobacter litoralis Och 149] Length = 164 Score = 180 bits (456), Expect = 6e-44, Method: Composition-based stats. Identities = 112/158 (70%), Positives = 130/158 (82%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 + + L++F L L+YFF K T+NYP EKG SPRFRGEHALRRYPNGEERCIA Sbjct: 8 RHAKYFLLQDFWVGMKLGLKYFFAPKATLNYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEA+CPAQAITI++ PR G+RRT RYDIDM KCIYCG C+EACPVDAIVEGPNFE Sbjct: 68 CKLCEAVCPAQAITIDAEPRDD-GSRRTTRYDIDMTKCIYCGFCEEACPVDAIVEGPNFE 126 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 F+TETR+ELYYDK+RLL NG+RWE+EI RN+ D+PYR Sbjct: 127 FSTETREELYYDKDRLLANGERWEAEIARNLEMDAPYR 164 >gi|217979057|ref|YP_002363204.1| NADH dehydrogenase subunit I [Methylocella silvestris BL2] gi|259514776|sp|B8EIM5|NUOI_METSB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|217504433|gb|ACK51842.1| NADH-quinone oxidoreductase, chain I [Methylocella silvestris BL2] Length = 162 Score = 180 bits (456), Expect = 6e-44, Method: Composition-based stats. Identities = 124/163 (76%), Positives = 135/163 (82%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M+ LFL EFVGAF L +RYFFK K T+NYP EK SPR+RGEHALRRYPNGE Sbjct: 1 MK-LDQAAKALFLSEFVGAFLLSMRYFFKPKPTLNYPHEKNPQSPRYRGEHALRRYPNGE 59 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE+GPR +DGTRRT RYDIDM+KCIYCG CQEACPVDAIVE Sbjct: 60 ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGFCQEACPVDAIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPN EF+ ETR+ELYYDK+RLL NG RWE EI RNI D+PYR Sbjct: 120 GPNAEFSVETREELYYDKDRLLENGARWEREIARNIALDAPYR 162 >gi|170748469|ref|YP_001754729.1| NADH dehydrogenase subunit I [Methylobacterium radiotolerans JCM 2831] gi|226737401|sp|B1LUM8|NUOI_METRJ RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|170654991|gb|ACB24046.1| NADH-quinone oxidoreductase, chain I [Methylobacterium radiotolerans JCM 2831] Length = 162 Score = 180 bits (456), Expect = 7e-44, Method: Composition-based stats. Identities = 123/163 (75%), Positives = 134/163 (82%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M+ L LKEFV L +RYFFK K TINYPFE G PRFRGEHALRRYPNGE Sbjct: 1 MK-LDQVAKSLLLKEFVSGMILGMRYFFKPKATINYPFEMGHRGPRFRGEHALRRYPNGE 59 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE+GPR +DGTRRT RYDIDM+KCIYCG+CQEACPVDAIVE Sbjct: 60 ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGMCQEACPVDAIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEF+ ETR+EL YDK++LL NGDRWE EI RNI D+PYR Sbjct: 120 GPNFEFSVETREELLYDKQKLLLNGDRWEREIARNIAMDAPYR 162 >gi|126740388|ref|ZP_01756076.1| NADH dehydrogenase subunit I [Roseobacter sp. SK209-2-6] gi|126718524|gb|EBA15238.1| NADH dehydrogenase subunit I [Roseobacter sp. SK209-2-6] Length = 164 Score = 180 bits (456), Expect = 7e-44, Method: Composition-based stats. Identities = 115/158 (72%), Positives = 130/158 (82%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 + L++F F L L+YFF K T+NYP EKG SPRFRGEHALRRYPNGEERCIA Sbjct: 8 RAAKYFLLQDFWVGFKLGLKYFFAPKATLNYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEAICPAQAITI++ PR DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE Sbjct: 68 CKLCEAICPAQAITIDAEPR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FATETR+EL+YDK +LL NG+RWE+EI RN+ D+PYR Sbjct: 127 FATETREELFYDKAKLLENGERWEAEIARNLEIDAPYR 164 >gi|310816705|ref|YP_003964669.1| NADH dehydrogenase subunit I [Ketogulonicigenium vulgare Y25] gi|308755440|gb|ADO43369.1| NADH dehydrogenase subunit I [Ketogulonicigenium vulgare Y25] Length = 164 Score = 179 bits (455), Expect = 7e-44, Method: Composition-based stats. Identities = 109/158 (68%), Positives = 129/158 (81%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 + LK+ F L ++YFF+ + T+NYP EK SPRFRGEHALRRYP+GEERCIA Sbjct: 8 RAAKYFLLKDVWDGFRLGMKYFFRPRPTVNYPHEKVPLSPRFRGEHALRRYPSGEERCIA 67 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEAICPAQAITI++ PR G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE Sbjct: 68 CKLCEAICPAQAITIDAEPRDD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FATE+R+EL+YDK++LL NGD+WE+EI RN+ D+PYR Sbjct: 127 FATESREELFYDKDKLLANGDKWEAEIARNLAADAPYR 164 >gi|319408587|emb|CBI82242.1| NADH dehydrogenase I chain I [Bartonella schoenbuchensis R1] Length = 166 Score = 179 bits (455), Expect = 9e-44, Method: Composition-based stats. Identities = 127/163 (77%), Positives = 139/163 (85%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M L L EF+ AFFL +R FF K TINYP+EKG SPRFRGEHALRRYPNGE Sbjct: 4 MSGLIQAAKSLLLLEFISAFFLAMRQFFSPKPTINYPYEKGFVSPRFRGEHALRRYPNGE 63 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE+GPRC+DGTRRT+RYDIDM+KCIYCG CQEACPVDAIVE Sbjct: 64 ERCIACKLCEAICPAQAITIEAGPRCNDGTRRTIRYDIDMVKCIYCGFCQEACPVDAIVE 123 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEFATE R+ELYYDKE+LL+NGDRWE EI RNI+ D+PYR Sbjct: 124 GPNFEFATEMREELYYDKEKLLSNGDRWEREIARNILMDAPYR 166 >gi|119384970|ref|YP_916026.1| NADH dehydrogenase subunit I [Paracoccus denitrificans PD1222] gi|156633536|sp|A1B486|NUOI_PARDP RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit 9; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NADH-quinone oxidoreductase subunit 9; Short=NQO9; AltName: Full=NDH-1 subunit 9; AltName: Full=NDH-1 subunit I gi|119374737|gb|ABL70330.1| NADH dehydrogenase subunit I [Paracoccus denitrificans PD1222] Length = 163 Score = 179 bits (455), Expect = 9e-44, Method: Composition-based stats. Identities = 112/160 (70%), Positives = 131/160 (81%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 F + + +F+ F L +RYF K T+NYP EKG SPRFRGEHALRRYPNGEERC Sbjct: 5 FARATKYFLMWDFIKGFGLGMRYFVSPKPTLNYPHEKGPLSPRFRGEHALRRYPNGEERC 64 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEA+CPAQAITI++ PR DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGPN Sbjct: 65 IACKLCEAVCPAQAITIDAEPR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 123 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FE+ATETR+EL+YDK++LL NG+RWE+EI RN+ D+PYR Sbjct: 124 FEYATETREELFYDKQKLLANGERWEAEIARNLQLDAPYR 163 >gi|83953899|ref|ZP_00962620.1| NADH dehydrogenase subunit I [Sulfitobacter sp. NAS-14.1] gi|83841844|gb|EAP81013.1| NADH dehydrogenase subunit I [Sulfitobacter sp. NAS-14.1] Length = 164 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 111/158 (70%), Positives = 130/158 (82%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 + + L++F L ++Y FK K TINYP EKG SPRFRGEHALRRYPNGEERCIA Sbjct: 8 RHAKYFLLQDFYHGLKLGIKYMFKPKATINYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEA+CPAQAITI++ PR G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE Sbjct: 68 CKLCEAVCPAQAITIDAEPRDD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 F+TETR+EL+YDK +LL+NG+RWE+EI RN+ D+PYR Sbjct: 127 FSTETREELFYDKAKLLDNGERWEAEIARNLELDAPYR 164 >gi|121601727|ref|YP_989078.1| NADH dehydrogenase subunit I [Bartonella bacilliformis KC583] gi|156632577|sp|A1USX5|NUOI_BARBK RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|120613904|gb|ABM44505.1| NADH dehydrogenase (quinone), I subunit [Bartonella bacilliformis KC583] Length = 163 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 126/163 (77%), Positives = 136/163 (83%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M L L EFV AFFL +R FF K TINYP+EKG S RFRGEHALRRYPNGE Sbjct: 1 MSGLIQAAKSLLLLEFVDAFFLAMRQFFSPKPTINYPYEKGFVSHRFRGEHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPV+AIVE Sbjct: 61 ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVEAIVE 120 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEFATE R+ELYYDKE+LL NGDRWE EI RNI+ D+PYR Sbjct: 121 GPNFEFATEMREELYYDKEKLLLNGDRWEREIARNILMDAPYR 163 >gi|328783520|ref|XP_003250306.1| PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial isoform 1 [Apis mellifera] Length = 175 Score = 179 bits (454), Expect = 1e-43, Method: Composition-based stats. Identities = 110/162 (67%), Positives = 124/162 (76%), Gaps = 1/162 (0%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 + V+ F E + + + +FF TINYPFEKG SPRFRGEHALRRYP+GEE Sbjct: 15 KFLDEAVNRSFFLEIIRGLGITMSHFFTEPATINYPFEKGPLSPRFRGEHALRRYPSGEE 74 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLCEAICPAQAITIE+ R G+RRT RYDIDM KCIYCG CQEACPVDAIVEG Sbjct: 75 RCIACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 133 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 PNFEF+TET +EL Y+KE+LLNNGD+WESEI NI D YR Sbjct: 134 PNFEFSTETHEELLYNKEKLLNNGDKWESEIASNIHADYLYR 175 >gi|296536148|ref|ZP_06898276.1| NADH-quinone oxidoreductase subunit I [Roseomonas cervicalis ATCC 49957] gi|296263519|gb|EFH10016.1| NADH-quinone oxidoreductase subunit I [Roseomonas cervicalis ATCC 49957] Length = 163 Score = 179 bits (453), Expect = 1e-43, Method: Composition-based stats. Identities = 113/164 (68%), Positives = 126/164 (76%), Gaps = 2/164 (1%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNG 59 M L E L L+YFF K TINYP EK + SPRF+GEHALRRYPNG Sbjct: 1 MATLDRMARSFLLAELASGMALTLKYFFAPNKGTINYPNEKTALSPRFKGEHALRRYPNG 60 Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 EERCIACKLCEA+CPA AITIE+ PR DG+RRT RYDIDM KCIYCGLC+EACPVDAIV Sbjct: 61 EERCIACKLCEAVCPALAITIEAEPR-EDGSRRTTRYDIDMTKCIYCGLCEEACPVDAIV 119 Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 EGPNFEFATETR+EL Y+K+RLL+NGDRWE EI R + D+PYR Sbjct: 120 EGPNFEFATETREELIYNKDRLLSNGDRWEPEIARRLELDAPYR 163 >gi|254465688|ref|ZP_05079099.1| NADH-quinone oxidoreductase subunit i [Rhodobacterales bacterium Y4I] gi|206686596|gb|EDZ47078.1| NADH-quinone oxidoreductase subunit i [Rhodobacterales bacterium Y4I] Length = 164 Score = 179 bits (453), Expect = 2e-43, Method: Composition-based stats. Identities = 115/158 (72%), Positives = 132/158 (83%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 + L++F F L ++YFF K T+NYP EKG SPRFRGEHALRRYPNGEERCIA Sbjct: 8 RAAKYFLLQDFWDGFKLGMKYFFAPKATLNYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEAICPAQAITI++ PR DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE Sbjct: 68 CKLCEAICPAQAITIDAEPR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FATETR+EL+YDKE+LL+NG+RWE+EI RN+ D+PYR Sbjct: 127 FATETREELFYDKEKLLSNGERWEAEIARNLEIDAPYR 164 >gi|50554865|ref|XP_504841.1| YALI0F00924p [Yarrowia lipolytica] gi|6689658|emb|CAB65524.1| subunit NUIM of protein NADH:Ubiquinone Oxidoreductase (Complex I) [Yarrowia lipolytica] gi|49650711|emb|CAG77643.1| YALI0F00924p [Yarrowia lipolytica] Length = 229 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 101/160 (63%), Positives = 119/160 (74%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + L E ++ L FF+A TI YPFEKG SPRFRGEHALRRYP+GEERC Sbjct: 71 LSKATKYFLLAEMFRGLYVVLEQFFRAPYTIYYPFEKGPVSPRFRGEHALRRYPSGEERC 130 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPA AITI++ R G+RRT +YDIDM KCIYCG CQE+CPVDAIVE PN Sbjct: 131 IACKLCEAICPALAITIDAEERID-GSRRTTKYDIDMTKCIYCGYCQESCPVDAIVETPN 189 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ATETR+EL Y+KE+LL NGD+WE E+ + D+PYR Sbjct: 190 VEYATETREELLYNKEKLLANGDKWELELQYALDADAPYR 229 >gi|182679344|ref|YP_001833490.1| NADH dehydrogenase subunit I [Beijerinckia indica subsp. indica ATCC 9039] gi|259514766|sp|B2IHV8|NUOI_BEII9 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|182635227|gb|ACB96001.1| NADH-quinone oxidoreductase, chain I [Beijerinckia indica subsp. indica ATCC 9039] Length = 162 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 125/163 (76%), Positives = 136/163 (83%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 MR LFLKEFVGAF L +RYFFK + T+NYP EK SPR+RGEHALRRYPNGE Sbjct: 1 MR-LDSAAKALFLKEFVGAFALSMRYFFKPRPTLNYPHEKNPQSPRYRGEHALRRYPNGE 59 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPA+AITIE+GPR +DGTRRT RYDIDM+KCIYCG CQEACPVDAIVE Sbjct: 60 ERCIACKLCEAICPAKAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGFCQEACPVDAIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPN EFA ETR+ELYYDK+RLL NG RWE EI RNI D+PYR Sbjct: 120 GPNAEFAVETREELYYDKDRLLQNGARWEREIARNIALDAPYR 162 >gi|226288083|gb|EEH43596.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Paracoccidioides brasiliensis Pb18] Length = 229 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 104/160 (65%), Positives = 120/160 (75%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + + E + ++ L FF+ TI YPFEKG SPRFRGEHALRRYP+GEERC Sbjct: 71 LDKAGKYFLMTEMLRGMYVVLEQFFRPPYTIFYPFEKGPISPRFRGEHALRRYPSGEERC 130 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAITIE+ R DG+RRT RYDIDM KCIYCG CQE+CPVDAIVE PN Sbjct: 131 IACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQESCPVDAIVESPN 189 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ATETR+EL Y+KE+LL NGD+WE EI D+PYR Sbjct: 190 AEYATETREELLYNKEKLLANGDKWEPEIAAAARADAPYR 229 >gi|114569913|ref|YP_756593.1| NADH dehydrogenase subunit I [Maricaulis maris MCS10] gi|122316117|sp|Q0APY2|NUOI_MARMM RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|114340375|gb|ABI65655.1| NADH dehydrogenase subunit I [Maricaulis maris MCS10] Length = 162 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 115/163 (70%), Positives = 128/163 (78%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + L +F AF L +RYFF K T+NYPFEKG SPRFRG+HALRRY NGE Sbjct: 1 MGRIQQAFRGALLMDFWSAFGLGMRYFFAKKATLNYPFEKGPLSPRFRGQHALRRYANGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE+ PR G+RRT RYDIDM KCIYCG CQEACPVDAIVE Sbjct: 61 ERCIACKLCEAICPAQAITIEAEPRSD-GSRRTTRYDIDMTKCIYCGYCQEACPVDAIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEFA ETR+EL+YDK +LL NGDRWE EI +N+ D+PYR Sbjct: 120 GPNFEFAAETREELFYDKAKLLENGDRWEREIAKNLELDAPYR 162 >gi|319404251|emb|CBI77844.1| NADH dehydrogenase I chain I [Bartonella rochalimae ATCC BAA-1498] Length = 163 Score = 178 bits (452), Expect = 2e-43, Method: Composition-based stats. Identities = 129/163 (79%), Positives = 139/163 (85%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M L L EF+ AFFL +R FF K TINYP+EKG SPRFRGEHALRRYPNGE Sbjct: 1 MSSLIQAAKSLLLLEFISAFFLAMRQFFSPKPTINYPYEKGCVSPRFRGEHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE+GPRC+DGTRRT+RYDIDM+KCIYCG CQEACPVDAIVE Sbjct: 61 ERCIACKLCEAICPAQAITIEAGPRCNDGTRRTIRYDIDMVKCIYCGFCQEACPVDAIVE 120 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEFATE R+ELYYDKE+LLNNGDRWE EI RNI+ DSPYR Sbjct: 121 GPNFEFATEMREELYYDKEKLLNNGDRWEREIARNILIDSPYR 163 >gi|307109800|gb|EFN58037.1| hypothetical protein CHLNCDRAFT_20716 [Chlorella variabilis] Length = 169 Score = 178 bits (451), Expect = 2e-43, Method: Composition-based stats. Identities = 108/161 (67%), Positives = 126/161 (78%), Gaps = 1/161 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 + + + LFL E L L+ FF+ TINYPFEKG SPRFRGEH LRRYP GEER Sbjct: 10 VLDESANTLFLTELWRGLALTLKVFFERPVTINYPFEKGPLSPRFRGEHVLRRYPTGEER 69 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEAICPAQAITIE+ R DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGP Sbjct: 70 CIACKLCEAICPAQAITIETEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 128 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 NFE++T TR+EL YDK++LL NGDRWE E+ +N+ +++ YR Sbjct: 129 NFEYSTGTREELLYDKQKLLANGDRWEVEVEKNLRSEAMYR 169 >gi|295659241|ref|XP_002790179.1| NADH-quinone oxidoreductase subunit I 2 [Paracoccidioides brasiliensis Pb01] gi|30351132|gb|AAP23044.1| ferredoxin-like iron-sulfur protein [Paracoccidioides brasiliensis] gi|226281884|gb|EEH37450.1| NADH-quinone oxidoreductase subunit I 2 [Paracoccidioides brasiliensis Pb01] Length = 229 Score = 178 bits (451), Expect = 2e-43, Method: Composition-based stats. Identities = 103/160 (64%), Positives = 120/160 (75%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + + E + ++ L FF+ TI YPFEKG SPRFRGEHALRRYP+GEERC Sbjct: 71 LDKAGKYFLMTEMLRGMYVVLEQFFRPPYTIFYPFEKGPISPRFRGEHALRRYPSGEERC 130 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAITIE+ R DG+RRT RYDIDM KCIYCG CQE+CPVDAIVE PN Sbjct: 131 IACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQESCPVDAIVESPN 189 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ATETR+EL Y+KE+LL NGD+WE E+ D+PYR Sbjct: 190 AEYATETREELLYNKEKLLANGDKWEPELAAAARADAPYR 229 >gi|159488755|ref|XP_001702368.1| NADH:ubiquinone oxidoreductase subunit 8 [Chlamydomonas reinhardtii] gi|34328786|gb|AAQ63697.1| NADH:ubiquinone oxidoreductase subunit 8 [Chlamydomonas reinhardtii] gi|158271162|gb|EDO96988.1| NADH:ubiquinone oxidoreductase subunit 8 [Chlamydomonas reinhardtii] Length = 231 Score = 178 bits (451), Expect = 2e-43, Method: Composition-based stats. Identities = 111/161 (68%), Positives = 124/161 (77%), Gaps = 1/161 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 + + S L L + L FF K TI YPFEKG SPRFRGEHALRRYP GEER Sbjct: 72 VLDDSASMLLLTDVWRGMAYTLGAFFDKKVTIMYPFEKGQLSPRFRGEHALRRYPTGEER 131 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEAICPAQAITIE+ R DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGP Sbjct: 132 CIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 190 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 NFEF+TETR+EL YDK++LL NGD+WE+EI N+ T+S YR Sbjct: 191 NFEFSTETREELLYDKQKLLENGDKWETEIATNLRTESLYR 231 >gi|242013397|ref|XP_002427394.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, putative [Pediculus humanus corporis] gi|212511768|gb|EEB14656.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, putative [Pediculus humanus corporis] Length = 204 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 108/161 (67%), Positives = 121/161 (75%), Gaps = 1/161 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 I V + L EF+ + FK TINYPFEKG SPRFRGEHALRRYP+GEER Sbjct: 45 ITDDFVKKVLLHEFLQGLSIVFGTTFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEER 104 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEAICPAQAITIE+ R G+RRT RYDIDM KCIYCG CQEACPVDAIVEGP Sbjct: 105 CIACKLCEAICPAQAITIEAEERSD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 163 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 NFE++T T +EL Y+KE+LL+NGD+WE EI NI D YR Sbjct: 164 NFEYSTFTHEELLYNKEKLLDNGDKWEVEIAANIEADHLYR 204 >gi|266659|sp|P29921|NQO9_PARDE RecName: Full=NADH-quinone oxidoreductase subunit 9; AltName: Full=NADH dehydrogenase I subunit 9; AltName: Full=NDH-1 subunit 9 gi|150609|gb|AAA25593.1| NADH dehydrogenase [Paracoccus denitrificans] Length = 163 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 111/160 (69%), Positives = 130/160 (81%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 F + + +F+ F L +RYF K T+NYP EKG SPRFRGEHALRRYPNGEERC Sbjct: 5 FARATKYFLMWDFIKGFGLGMRYFVSPKPTLNYPHEKGPLSPRFRGEHALRRYPNGEERC 64 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEA+CPAQAITI++ R DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGPN Sbjct: 65 IACKLCEAVCPAQAITIDAE-RREDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 123 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FE+ATETR+EL+YDK++LL NG+RWE+EI RN+ D+PYR Sbjct: 124 FEYATETREELFYDKQKLLANGERWEAEIARNLQLDAPYR 163 >gi|190348547|gb|EDK41017.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC 6260] Length = 233 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 106/160 (66%), Positives = 122/160 (76%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 F FL E ++C+ FF+A TI YPFEKG SPRFRGEHALRRYP+GEERC Sbjct: 75 LSKATKFFFLSEIARGMYICMEMFFRAPYTIYYPFEKGPISPRFRGEHALRRYPSGEERC 134 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAITIE+ R G+RRT +YDIDM KCIYCG CQE+CPVDAIVE PN Sbjct: 135 IACKLCEAICPAQAITIEAEERAD-GSRRTYKYDIDMTKCIYCGYCQESCPVDAIVESPN 193 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ATETR+EL Y+KE+LL NGD+WE E+ I D+PYR Sbjct: 194 VEYATETREELLYNKEKLLENGDKWEQELQYCIDADAPYR 233 >gi|91789108|ref|YP_550060.1| NADH dehydrogenase subunit I [Polaromonas sp. JS666] gi|123164661|sp|Q127Y0|NUOI_POLSJ RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|91698333|gb|ABE45162.1| NADH dehydrogenase subunit I [Polaromonas sp. JS666] Length = 165 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 93/159 (58%), Positives = 108/159 (67%), Gaps = 1/159 (0%) Query: 5 RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64 + VS L E L +Y F K T+ +P EK SPRFRG HALRRY NGEERCI Sbjct: 8 KDFVSSFMLTELFKGMALTGKYMFSRKITVQFPEEKTPLSPRFRGLHALRRYDNGEERCI 67 Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 ACKLCEA+CPA AITIES R G+RRT RYDID+ KCI+CG C+EACPVDAIVE F Sbjct: 68 ACKLCEAVCPALAITIESEVRDD-GSRRTSRYDIDLTKCIFCGFCEEACPVDAIVETHIF 126 Query: 125 EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +LY+ KE LL GDR+E+EI N D+ YR Sbjct: 127 EYHGEKRGDLYFTKEMLLAVGDRYEAEIAANKAADAKYR 165 >gi|241679736|ref|XP_002400836.1| NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit, putative [Ixodes scapularis] gi|215504281|gb|EEC13775.1| NADH:ubiquinone oxidoreductase, NDUFS8/23 kDa subunit, putative [Ixodes scapularis] Length = 210 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 106/159 (66%), Positives = 120/159 (75%), Gaps = 1/159 (0%) Query: 5 RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64 +F+ E + + FK TINYPFEKG SPRFRGEHALRRYP+GEERCI Sbjct: 53 DKAAQMIFITEILRGLAVVTAQIFKEPATINYPFEKGPLSPRFRGEHALRRYPSGEERCI 112 Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 ACKLCEAICPAQAITIE+ R G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNF Sbjct: 113 ACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNF 171 Query: 125 EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E++TET +EL Y+KE+LL+NGD+WE EI NI D YR Sbjct: 172 EYSTETHEELLYNKEKLLDNGDKWEPEIAANIQADYLYR 210 >gi|268576410|ref|XP_002643185.1| Hypothetical protein CBG24154 [Caenorhabditis briggsae] gi|187040443|emb|CAP20828.1| hypothetical protein CBG_24154 [Caenorhabditis briggsae AF16] Length = 212 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 105/160 (65%), Positives = 120/160 (75%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + +F E F + L + F TINYPFEKG S RFRGEHALRRYP+GEERC Sbjct: 54 LNYGLHTVFFTELFRGFGVMLGHVFMEPATINYPFEKGPLSSRFRGEHALRRYPSGEERC 113 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAITIE+ R G+RRT RYDIDM KCIYCGLCQEACPVDAIVEGPN Sbjct: 114 IACKLCEAICPAQAITIEAETRPD-GSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGPN 172 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FE++TET +EL Y+KE+LL NGDRWE E+ N+ + YR Sbjct: 173 FEYSTETHEELLYNKEKLLLNGDRWEPELASNLQAEYLYR 212 >gi|308463017|ref|XP_003093787.1| hypothetical protein CRE_24782 [Caenorhabditis remanei] gi|308249393|gb|EFO93345.1| hypothetical protein CRE_24782 [Caenorhabditis remanei] Length = 212 Score = 178 bits (451), Expect = 3e-43, Method: Composition-based stats. Identities = 105/160 (65%), Positives = 120/160 (75%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + +F E F + L + F TINYPFEKG S RFRGEHALRRYP+GEERC Sbjct: 54 LNYGLHTVFFTELFRGFGVMLGHVFMEPATINYPFEKGPLSSRFRGEHALRRYPSGEERC 113 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAITIE+ R G+RRT RYDIDM KCIYCGLCQEACPVDAIVEGPN Sbjct: 114 IACKLCEAICPAQAITIEAETRPD-GSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGPN 172 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FE++TET +EL Y+KE+LL NGDRWE E+ N+ + YR Sbjct: 173 FEYSTETHEELLYNKEKLLLNGDRWEPELASNLQAEYLYR 212 >gi|308152250|emb|CBI83544.1| NUIM (TYKY) subunit of mitochondrial NADH:ubiquinone oxidoreductase (complex I) [Pichia pastoris] gi|328353143|emb|CCA39541.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8 [Pichia pastoris CBS 7435] Length = 222 Score = 177 bits (450), Expect = 3e-43, Method: Composition-based stats. Identities = 102/160 (63%), Positives = 120/160 (75%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + L E ++ L +F+A TI YPFEKG SPRFRGEHALRRYP+GEERC Sbjct: 64 LSKATKWYLLSEIFRGLYITLEMYFRAPYTIYYPFEKGPVSPRFRGEHALRRYPSGEERC 123 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEA+CPAQAITIE+ R G+RRT +YDIDM KCIYCG CQE+CPVDAIVE PN Sbjct: 124 IACKLCEAVCPAQAITIEAEERID-GSRRTYKYDIDMTKCIYCGYCQESCPVDAIVETPN 182 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ATETR+EL Y+KE+LL NGD+WE EI + D+PYR Sbjct: 183 VEYATETREELLYNKEKLLANGDKWEQEIQYALDADAPYR 222 >gi|146414379|ref|XP_001483160.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC 6260] Length = 233 Score = 177 bits (450), Expect = 4e-43, Method: Composition-based stats. Identities = 106/160 (66%), Positives = 121/160 (75%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 F FL E ++C+ FF+A TI YPFEKG SPRFRGEHALRRYP+GEERC Sbjct: 75 LSKATKFFFLSEIARGMYICMEMFFRAPYTIYYPFEKGPISPRFRGEHALRRYPSGEERC 134 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAITIE+ R G RRT +YDIDM KCIYCG CQE+CPVDAIVE PN Sbjct: 135 IACKLCEAICPAQAITIEAEERAD-GLRRTYKYDIDMTKCIYCGYCQESCPVDAIVESPN 193 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ATETR+EL Y+KE+LL NGD+WE E+ I D+PYR Sbjct: 194 VEYATETREELLYNKEKLLENGDKWEQELQYCIDADAPYR 233 >gi|296444802|ref|ZP_06886765.1| NADH-quinone oxidoreductase, chain I [Methylosinus trichosporium OB3b] gi|296257750|gb|EFH04814.1| NADH-quinone oxidoreductase, chain I [Methylosinus trichosporium OB3b] Length = 162 Score = 177 bits (449), Expect = 4e-43, Method: Composition-based stats. Identities = 124/163 (76%), Positives = 134/163 (82%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M+ LFL EF+ AFFL + YFFK K T+NYP EK SPRFRGEHALRRYPNGE Sbjct: 1 MK-LDQAAKSLFLTEFIAAFFLSMHYFFKPKATLNYPHEKNPISPRFRGEHALRRYPNGE 59 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE+GPR +DGTRRT RYDIDM+KCIYCG CQEACPVDAIVE Sbjct: 60 ERCIACKLCEAICPAQAITIEAGPRRNDGTRRTTRYDIDMVKCIYCGFCQEACPVDAIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPN EFA ETR+ELYY+K+RLL NG RWE EI RNI DSPYR Sbjct: 120 GPNQEFAVETREELYYNKDRLLENGARWEREIARNIAMDSPYR 162 >gi|315499798|ref|YP_004088601.1| NADH-quinone oxidoreductase, chain i [Asticcacaulis excentricus CB 48] gi|315417810|gb|ADU14450.1| NADH-quinone oxidoreductase, chain I [Asticcacaulis excentricus CB 48] Length = 163 Score = 177 bits (449), Expect = 4e-43, Method: Composition-based stats. Identities = 120/160 (75%), Positives = 131/160 (81%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 L +FVGA L ++Y FK K TINYPFEKG SPRFRGEHALRRYPNGEERC Sbjct: 5 LVQAAKGALLLDFVGATGLAVKYMFKPKKTINYPFEKGPISPRFRGEHALRRYPNGEERC 64 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAITIE+ PR DG+RRT RYDIDM+KCIYCGLCQEACPVDAIVEGPN Sbjct: 65 IACKLCEAICPAQAITIEAEPR-EDGSRRTTRYDIDMVKCIYCGLCQEACPVDAIVEGPN 123 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FEFAT+TR+ELYYDK +LL NGDRWE EI R + D+PYR Sbjct: 124 FEFATDTREELYYDKSKLLANGDRWEREIARALELDAPYR 163 >gi|312072386|ref|XP_003139042.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Loa loa] gi|307765791|gb|EFO25025.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Loa loa] Length = 206 Score = 177 bits (449), Expect = 4e-43, Method: Composition-based stats. Identities = 106/160 (66%), Positives = 125/160 (78%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 FR + ++F+ E V + + ++F TINYPFEKG S RFRGEHALRRYP+GEERC Sbjct: 48 FRRAMHYMFMTELVRGMGIIVGHYFMEPATINYPFEKGPLSSRFRGEHALRRYPSGEERC 107 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAITIE+ R G+RRT RYDIDM KCIYCGLCQEACPVDAIVEGPN Sbjct: 108 IACKLCEAICPAQAITIEAEARPD-GSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGPN 166 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FE++TET +EL Y+KE+LL NGDRWE E+ N+ + YR Sbjct: 167 FEYSTETHEELLYNKEKLLLNGDRWEPELAANLQAEYLYR 206 >gi|198433064|ref|XP_002131912.1| PREDICTED: similar to NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial precursor (NADH-ubiquinone oxidoreductase 23 kDa subunit) (Complex I-23kD) (CI-23kD) (TYKY subunit) [Ciona intestinalis] Length = 208 Score = 177 bits (449), Expect = 4e-43, Method: Composition-based stats. Identities = 107/162 (66%), Positives = 123/162 (75%), Gaps = 1/162 (0%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 I N + +F E + F + L TINYPFEKG SPRFRGEHALRRYP+GEE Sbjct: 48 NIVDTNANAIFATELLRGFGMVLAKSMSEPATINYPFEKGPLSPRFRGEHALRRYPSGEE 107 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLCEAICPAQAITIE+ R G+RRT RYDIDM KCIYCG CQEACPVDAIVEG Sbjct: 108 RCIACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEG 166 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 PNFE++T+T +EL Y+KE+LL+NGD+WE+EI NI D YR Sbjct: 167 PNFEYSTDTHEELLYNKEKLLDNGDKWETEIAANIEADYLYR 208 >gi|115389268|ref|XP_001212139.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial precursor [Aspergillus terreus NIH2624] gi|114194535|gb|EAU36235.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial precursor [Aspergillus terreus NIH2624] Length = 226 Score = 177 bits (449), Expect = 4e-43, Method: Composition-based stats. Identities = 104/160 (65%), Positives = 117/160 (73%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + L E ++ L FF+ TI YPFEKG SPRFRGEHALRRYP GEERC Sbjct: 68 LDKATKYFLLAEMFRGMYVVLEQFFRPPYTIFYPFEKGPISPRFRGEHALRRYPTGEERC 127 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAITIE+ R DG+RRT RYDIDM KCIYCG CQE+CPVDAIVE N Sbjct: 128 IACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGYCQESCPVDAIVETSN 186 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ATETR+EL Y+KE+LL NGD+WE EI D+PYR Sbjct: 187 AEYATETREELLYNKEKLLANGDKWEPEIAAAARADAPYR 226 >gi|254455959|ref|ZP_05069388.1| NADH dehydrogenase i chain i [Candidatus Pelagibacter sp. HTCC7211] gi|207082961|gb|EDZ60387.1| NADH dehydrogenase i chain i [Candidatus Pelagibacter sp. HTCC7211] Length = 161 Score = 177 bits (449), Expect = 4e-43, Method: Composition-based stats. Identities = 111/163 (68%), Positives = 134/163 (82%), Gaps = 2/163 (1%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M+ +F+ +F+G + ++ FK+K TINYPFEKG SPRFRGEHALRRYPNGE Sbjct: 1 MK-LSRFFKTIFMTDFIGGLVIAIKELFKSKKTINYPFEKGKISPRFRGEHALRRYPNGE 59 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPAQAITIES R DG+R+T RYDIDM+KCIYCGLC+E+CPVDAIV+ Sbjct: 60 ERCIACKLCEAVCPAQAITIESAAR-EDGSRKTTRYDIDMMKCIYCGLCEESCPVDAIVQ 118 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEF+TETR+ELYY KE+LL+NGDRWE+ + NI D+PYR Sbjct: 119 GPNFEFSTETREELYYTKEKLLDNGDRWENVLAANIKADNPYR 161 >gi|17555194|ref|NP_498595.1| hypothetical protein T20H4.5 [Caenorhabditis elegans] gi|3929363|sp|Q22619|NDUS8_CAEEL RecName: Full=Probable NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial; AltName: Full=Complex I-23kD; Short=CI-23kD; AltName: Full=NADH-ubiquinone oxidoreductase 23 kDa subunit; Flags: Precursor gi|4972961|gb|AAD34863.1|AF140272_1 NADH oxidoreductase complex I 23.8 kDa subunit [Caenorhabditis elegans] gi|459011|gb|AAA50662.1| Hypothetical protein T20H4.5 [Caenorhabditis elegans] Length = 212 Score = 177 bits (449), Expect = 4e-43, Method: Composition-based stats. Identities = 105/160 (65%), Positives = 120/160 (75%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + +F E F + L + F TINYPFEKG S RFRGEHALRRYP+GEERC Sbjct: 54 LNYGLHNVFFTELFRGFGVMLGHVFMEPATINYPFEKGPLSSRFRGEHALRRYPSGEERC 113 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAITIE+ R G+RRT RYDIDM KCIYCGLCQEACPVDAIVEGPN Sbjct: 114 IACKLCEAICPAQAITIEAETRPD-GSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGPN 172 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FE++TET +EL Y+KE+LL NGDRWE E+ N+ + YR Sbjct: 173 FEYSTETHEELLYNKEKLLLNGDRWEPELASNLQAEYLYR 212 >gi|330813990|ref|YP_004358229.1| NADH-ubiquinone oxidoreductase chain I [Candidatus Pelagibacter sp. IMCC9063] gi|327487085|gb|AEA81490.1| NADH-ubiquinone oxidoreductase chain I [Candidatus Pelagibacter sp. IMCC9063] Length = 161 Score = 177 bits (449), Expect = 5e-43, Method: Composition-based stats. Identities = 114/163 (69%), Positives = 136/163 (83%), Gaps = 2/163 (1%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M+ F + +FL EFV A +L ++Y FK K TINYPFEKG SPRFRGEHALRRYPNGE Sbjct: 1 MK-FDRIIKTIFLVEFVKALYLAIKYMFKDKATINYPFEKGPLSPRFRGEHALRRYPNGE 59 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPAQAI+I++ + DG+R+T RYDIDM+KCIYCGLCQEACPVDAIV+ Sbjct: 60 ERCIACKLCEAVCPAQAISIDAELK-EDGSRKTTRYDIDMVKCIYCGLCQEACPVDAIVQ 118 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEF+TETR+ELYY+K++L++NGDRWE EI NI D YR Sbjct: 119 GPNFEFSTETREELYYNKDKLMDNGDRWEKEIAHNIKKDKAYR 161 >gi|254571471|ref|XP_002492845.1| hypothetical protein [Pichia pastoris GS115] gi|238032643|emb|CAY70666.1| Hypothetical protein PAS_chr3_0619 [Pichia pastoris GS115] Length = 211 Score = 177 bits (448), Expect = 5e-43, Method: Composition-based stats. Identities = 102/159 (64%), Positives = 121/159 (76%), Gaps = 1/159 (0%) Query: 5 RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64 + + L E ++ L +F+A TI YPFEKG SPRFRGEHALRRYP+GEERCI Sbjct: 54 KDATKWYLLSEIFRGLYITLEMYFRAPYTIYYPFEKGPVSPRFRGEHALRRYPSGEERCI 113 Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 ACKLCEA+CPAQAITIE+ R G+RRT +YDIDM KCIYCG CQE+CPVDAIVE PN Sbjct: 114 ACKLCEAVCPAQAITIEAEERID-GSRRTYKYDIDMTKCIYCGYCQESCPVDAIVETPNV 172 Query: 125 EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ATETR+EL Y+KE+LL NGD+WE EI + D+PYR Sbjct: 173 EYATETREELLYNKEKLLANGDKWEQEIQYALDADAPYR 211 >gi|70991122|ref|XP_750410.1| NADH-quinone oxidoreductase, 23 kDa subunit [Aspergillus fumigatus Af293] gi|66848042|gb|EAL88372.1| NADH-quinone oxidoreductase, 23 kDa subunit, putative [Aspergillus fumigatus Af293] gi|159130884|gb|EDP55997.1| NADH-quinone oxidoreductase, 23 kDa subunit, putative [Aspergillus fumigatus A1163] Length = 228 Score = 177 bits (448), Expect = 6e-43, Method: Composition-based stats. Identities = 103/160 (64%), Positives = 117/160 (73%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + + E ++ L FF+ TI YPFEKG SPRFRGEHALRRYP GEERC Sbjct: 70 LDKASKYFLMAELFRGMYVVLEQFFRPPYTIYYPFEKGPISPRFRGEHALRRYPTGEERC 129 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAITIE+ R DG+RRT RYDIDM KCIYCG CQE+CPVDAIVE N Sbjct: 130 IACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGYCQESCPVDAIVETSN 188 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ATETR+EL Y+KE+LL NGD+WE EI D+PYR Sbjct: 189 AEYATETREELLYNKEKLLANGDKWEPEIAAAARADAPYR 228 >gi|34496404|ref|NP_900619.1| NADH dehydrogenase subunit I [Chromobacterium violaceum ATCC 12472] gi|81656630|sp|Q7NZH3|NUOI_CHRVO RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|34102257|gb|AAQ58623.1| NADH-ubiquinone oxidoreductase, chain I [Chromobacterium violaceum ATCC 12472] Length = 162 Score = 176 bits (447), Expect = 7e-43, Method: Composition-based stats. Identities = 94/163 (57%), Positives = 108/163 (66%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M R L E V + RYFF K T+ +P EK SPRFRG HA RRY NGE Sbjct: 1 MNSIRNFFKTFLLVELVKGLMVTGRYFFARKITVQFPEEKTPISPRFRGLHAQRRYANGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AI+IES R DGTRRT RYDID+ KCI+CG C+EACPVDAIVE Sbjct: 61 ERCIACKLCEAVCPAMAISIESEQR-EDGTRRTSRYDIDLTKCIFCGFCEEACPVDAIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FE+ E R +LYY K LL GD++E+EI N D+ YR Sbjct: 120 THIFEYHGEKRGDLYYTKPMLLAIGDKYEAEIAANKAADAKYR 162 >gi|238878682|gb|EEQ42320.1| NADH-ubiquinone oxidoreductase subunit 8 [Candida albicans WO-1] Length = 244 Score = 176 bits (447), Expect = 7e-43, Method: Composition-based stats. Identities = 105/160 (65%), Positives = 122/160 (76%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 FLFL E ++CL +F+A TI YPFEKG SPRFRGEHALRRYP+GEERC Sbjct: 86 LSKATKFLFLSEIARGMYICLEMYFRAPYTIYYPFEKGPISPRFRGEHALRRYPSGEERC 145 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAITIE+ R G+RRT +YDIDM KCIYCG CQE+CPVDAIVE PN Sbjct: 146 IACKLCEAICPAQAITIEAEERID-GSRRTYKYDIDMTKCIYCGYCQESCPVDAIVETPN 204 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E++T TR+EL Y+KE+LL NGD+WE E+ I D+PYR Sbjct: 205 VEYSTATREELLYNKEKLLENGDKWEQELQYCIDADAPYR 244 >gi|68464733|ref|XP_723444.1| potential mitochondrial Complex I, NUIM_23kd subunit [Candida albicans SC5314] gi|68465112|ref|XP_723255.1| potential mitochondrial Complex I, NUIM_23kd subunit [Candida albicans SC5314] gi|46445282|gb|EAL04551.1| potential mitochondrial Complex I, NUIM_23kd subunit [Candida albicans SC5314] gi|46445478|gb|EAL04746.1| potential mitochondrial Complex I, NUIM_23kd subunit [Candida albicans SC5314] Length = 246 Score = 176 bits (447), Expect = 7e-43, Method: Composition-based stats. Identities = 105/160 (65%), Positives = 122/160 (76%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 FLFL E ++CL +F+A TI YPFEKG SPRFRGEHALRRYP+GEERC Sbjct: 88 LSKATKFLFLSEIARGMYICLEMYFRAPYTIYYPFEKGPISPRFRGEHALRRYPSGEERC 147 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAITIE+ R G+RRT +YDIDM KCIYCG CQE+CPVDAIVE PN Sbjct: 148 IACKLCEAICPAQAITIEAEERID-GSRRTYKYDIDMTKCIYCGYCQESCPVDAIVETPN 206 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E++T TR+EL Y+KE+LL NGD+WE E+ I D+PYR Sbjct: 207 VEYSTATREELLYNKEKLLENGDKWEQELQYCIDADAPYR 246 >gi|296136698|ref|YP_003643940.1| hypothetical protein Tint_2260 [Thiomonas intermedia K12] gi|294340853|emb|CAZ89248.1| NADH-quinone oxidoreductase subunit I (NADH dehydrogenase I subunit I) (NDH-1 subunit I) [Thiomonas sp. 3As] gi|295796820|gb|ADG31610.1| hypothetical protein Tint_2260 [Thiomonas intermedia K12] Length = 162 Score = 176 bits (447), Expect = 7e-43, Method: Composition-based stats. Identities = 96/163 (58%), Positives = 112/163 (68%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M R + FL E L +Y FK+K T+ YP EK SPRFRG HALRRYPNGE Sbjct: 1 MAALRDTFNSFFLVELFKGLALTGKYAFKSKITVQYPEEKTPLSPRFRGLHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIES R GTRRT RYDID+ KCI+CGLC+E+CPVD+IVE Sbjct: 61 ERCIACKLCEAVCPALAITIESEQRDD-GTRRTTRYDIDLTKCIFCGLCEESCPVDSIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FE+ E R +LY+ KE LL GDR+E +I D+PYR Sbjct: 120 TSIFEYHGEKRGDLYFTKEMLLAVGDRYEKDIAATKEADAPYR 162 >gi|119496461|ref|XP_001265004.1| NADH-quinone oxidoreductase, 23 kDa subunit, putative [Neosartorya fischeri NRRL 181] gi|119413166|gb|EAW23107.1| NADH-quinone oxidoreductase, 23 kDa subunit, putative [Neosartorya fischeri NRRL 181] Length = 228 Score = 176 bits (447), Expect = 7e-43, Method: Composition-based stats. Identities = 103/160 (64%), Positives = 117/160 (73%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + + E ++ L FF+ TI YPFEKG SPRFRGEHALRRYP GEERC Sbjct: 70 LDKASKYFLMAELFRGMYVVLEQFFRPPYTIFYPFEKGPISPRFRGEHALRRYPTGEERC 129 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAITIE+ R DG+RRT RYDIDM KCIYCG CQE+CPVDAIVE N Sbjct: 130 IACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGYCQESCPVDAIVETSN 188 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ATETR+EL Y+KE+LL NGD+WE EI D+PYR Sbjct: 189 AEYATETREELLYNKEKLLANGDKWEPEIAAAARADAPYR 228 >gi|197105259|ref|YP_002130636.1| NADH dehydrogenase I, I subunit [Phenylobacterium zucineum HLK1] gi|196478679|gb|ACG78207.1| NADH dehydrogenase I, I subunit [Phenylobacterium zucineum HLK1] Length = 163 Score = 176 bits (447), Expect = 7e-43, Method: Composition-based stats. Identities = 112/158 (70%), Positives = 128/158 (81%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 V L +F GAF L +++ + K T+ YP E+ SPRFRGEHALRRYPNGEERCIA Sbjct: 7 QAVKGAALLDFAGAFGLAMKHMARPKKTVQYPHERNPQSPRFRGEHALRRYPNGEERCIA 66 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEA+CPAQAITIE+ PR G+RRT RYDIDM+KCIYCGLCQEACPVDAIVEGPN E Sbjct: 67 CKLCEAVCPAQAITIEAEPRAD-GSRRTTRYDIDMVKCIYCGLCQEACPVDAIVEGPNLE 125 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FA ETR+ELYYDKERLL+NGDRWE EI +N+ D+PYR Sbjct: 126 FAVETREELYYDKERLLDNGDRWEREIAKNLELDAPYR 163 >gi|296808641|ref|XP_002844659.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Arthroderma otae CBS 113480] gi|238844142|gb|EEQ33804.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Arthroderma otae CBS 113480] Length = 231 Score = 176 bits (447), Expect = 7e-43, Method: Composition-based stats. Identities = 102/160 (63%), Positives = 118/160 (73%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + + E ++ L FF+ TI YPFEKG SPRFRGEHALRRYP+GEERC Sbjct: 73 LDSATKYFLMAELFRGMYVVLEQFFRPPYTIFYPFEKGPISPRFRGEHALRRYPSGEERC 132 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAITIE+ R G+RRT RYDIDM KCIYCG CQE+CPVDAIVE PN Sbjct: 133 IACKLCEAICPAQAITIEAEERVD-GSRRTTRYDIDMTKCIYCGFCQESCPVDAIVESPN 191 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ATETR+EL Y+KE+LL NGD+WE E+ D+PYR Sbjct: 192 AEYATETREELLYNKEKLLANGDKWEPELAAAARADAPYR 231 >gi|119187897|ref|XP_001244555.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial precursor [Coccidioides immitis RS] Length = 232 Score = 176 bits (447), Expect = 7e-43, Method: Composition-based stats. Identities = 105/162 (64%), Positives = 120/162 (74%), Gaps = 1/162 (0%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 + + E ++ L FF+ TI YPFEKG SPRFRGEHALRRYP+GEE Sbjct: 72 STLDKAGKYFLMTELFRGMYVVLEQFFRPPYTIYYPFEKGPISPRFRGEHALRRYPSGEE 131 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLCEAICPAQAITIE+ R DG+RRT RYDIDM KCIYCG CQE+CPVDAIVE Sbjct: 132 RCIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQESCPVDAIVES 190 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 PN E+ATETR+EL Y+KE+LL NGD+WESEI D+PYR Sbjct: 191 PNAEYATETREELLYNKEKLLANGDKWESEIAAAARADAPYR 232 >gi|260574770|ref|ZP_05842773.1| NADH-quinone oxidoreductase, chain I [Rhodobacter sp. SW2] gi|259023187|gb|EEW26480.1| NADH-quinone oxidoreductase, chain I [Rhodobacter sp. SW2] Length = 164 Score = 176 bits (447), Expect = 8e-43, Method: Composition-based stats. Identities = 110/158 (69%), Positives = 129/158 (81%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 V + + +F+ F L ++YF K T+NYP EKG SPRFRGEHALRRYPNGEERCIA Sbjct: 8 RAVKYFLMWDFIKGFGLGMKYFLAPKDTLNYPHEKGKLSPRFRGEHALRRYPNGEERCIA 67 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEAICPAQAITI++ PR G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE Sbjct: 68 CKLCEAICPAQAITIDAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 F+TETR+EL+Y+KE+LL NG +WE+EI RN+ D+PYR Sbjct: 127 FSTETREELFYNKEKLLANGAQWEAEIARNLEMDAPYR 164 >gi|327308414|ref|XP_003238898.1| ferredoxin-like iron-sulfur protein [Trichophyton rubrum CBS 118892] gi|326459154|gb|EGD84607.1| ferredoxin-like iron-sulfur protein [Trichophyton rubrum CBS 118892] Length = 227 Score = 176 bits (447), Expect = 8e-43, Method: Composition-based stats. Identities = 102/160 (63%), Positives = 118/160 (73%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + + E ++ L FF+ TI YPFEKG SPRFRGEHALRRYP+GEERC Sbjct: 69 LDSATKYFLMAELFRGMYVVLEQFFRPPYTIFYPFEKGPISPRFRGEHALRRYPSGEERC 128 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAITIE+ R G+RRT RYDIDM KCIYCG CQE+CPVDAIVE PN Sbjct: 129 IACKLCEAICPAQAITIEAEERVD-GSRRTTRYDIDMTKCIYCGFCQESCPVDAIVESPN 187 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ATETR+EL Y+KE+LL NGD+WE E+ D+PYR Sbjct: 188 AEYATETREELLYNKEKLLANGDKWEPELAAAARADAPYR 227 >gi|209518507|ref|ZP_03267328.1| NADH-quinone oxidoreductase, chain I [Burkholderia sp. H160] gi|209501052|gb|EEA01087.1| NADH-quinone oxidoreductase, chain I [Burkholderia sp. H160] Length = 162 Score = 176 bits (446), Expect = 8e-43, Method: Composition-based stats. Identities = 92/163 (56%), Positives = 110/163 (67%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + FL E + L RY F+ K T+ +P EK SPRFRG HALRRY NGE Sbjct: 1 MTAIQNFFKTFFLTELLKGLALTGRYAFQRKVTVQFPEEKTPISPRFRGLHALRRYENGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIES R + TRRT RYDID+ KCI+CG C+E+CPVD+IVE Sbjct: 61 ERCIACKLCEAVCPALAITIESETRADN-TRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +LY+ KE LL GDR+E+EI N D+PYR Sbjct: 120 THILEYHGEKRGDLYFTKEMLLAVGDRYEAEIAANKAADAPYR 162 >gi|295676045|ref|YP_003604569.1| NADH-quinone oxidoreductase, chain I [Burkholderia sp. CCGE1002] gi|295435888|gb|ADG15058.1| NADH-quinone oxidoreductase, chain I [Burkholderia sp. CCGE1002] Length = 162 Score = 176 bits (446), Expect = 9e-43, Method: Composition-based stats. Identities = 91/163 (55%), Positives = 110/163 (67%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + FL E + L RY F+ K T+ +P EK SPRFRG HALRRY NGE Sbjct: 1 MTAIQNFFKTFFLTELLKGLALTGRYTFQRKVTVQFPEEKTPISPRFRGLHALRRYENGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIES R + TRRT RYDID+ KCI+CG C+E+CPVD+IVE Sbjct: 61 ERCIACKLCEAVCPALAITIESETRADN-TRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +LY+ KE LL GDR+E++I N D+PYR Sbjct: 120 THILEYHGEKRGDLYFTKEMLLAVGDRYEAQIAANKAADAPYR 162 >gi|315054381|ref|XP_003176565.1| NADH-ubiquinone oxidoreductase subunit [Arthroderma gypseum CBS 118893] gi|311338411|gb|EFQ97613.1| NADH-ubiquinone oxidoreductase subunit [Arthroderma gypseum CBS 118893] Length = 227 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 102/160 (63%), Positives = 118/160 (73%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + + E ++ L FF+ TI YPFEKG SPRFRGEHALRRYP+GEERC Sbjct: 69 LDSATKYFLMAELFRGMYVVLEQFFRPPYTIFYPFEKGPISPRFRGEHALRRYPSGEERC 128 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAITIE+ R G+RRT RYDIDM KCIYCG CQE+CPVDAIVE PN Sbjct: 129 IACKLCEAICPAQAITIEAEERVD-GSRRTTRYDIDMTKCIYCGFCQESCPVDAIVESPN 187 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ATETR+EL Y+KE+LL NGD+WE E+ D+PYR Sbjct: 188 AEYATETREELLYNKEKLLANGDKWEPELAAAARADAPYR 227 >gi|303316716|ref|XP_003068360.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial precursor, putative [Coccidioides posadasii C735 delta SOWgp] gi|240108041|gb|EER26215.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial precursor, putative [Coccidioides posadasii C735 delta SOWgp] gi|320038169|gb|EFW20105.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Coccidioides posadasii str. Silveira] Length = 232 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 105/162 (64%), Positives = 120/162 (74%), Gaps = 1/162 (0%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 + + E ++ L FF+ TI YPFEKG SPRFRGEHALRRYP+GEE Sbjct: 72 STLDKAGKYFLMTELFRGMYVVLEQFFRPPYTIYYPFEKGPISPRFRGEHALRRYPSGEE 131 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLCEAICPAQAITIE+ R DG+RRT RYDIDM KCIYCG CQE+CPVDAIVE Sbjct: 132 RCIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQESCPVDAIVES 190 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 PN E+ATETR+EL Y+KE+LL NGD+WESEI D+PYR Sbjct: 191 PNAEYATETREELLYNKEKLLANGDKWESEIAAAARADAPYR 232 >gi|315122717|ref|YP_004063206.1| NADH dehydrogenase subunit I [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496119|gb|ADR52718.1| NADH dehydrogenase subunit I [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 159 Score = 176 bits (446), Expect = 1e-42, Method: Composition-based stats. Identities = 147/157 (93%), Positives = 152/157 (96%) Query: 7 NVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIAC 66 NVSFLFLKEFV +FFLC+RYFFKAK TINYPFEKGS SPRFRGEHALRRYPNGEERCIAC Sbjct: 3 NVSFLFLKEFVLSFFLCMRYFFKAKATINYPFEKGSVSPRFRGEHALRRYPNGEERCIAC 62 Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 KLCEA+CPAQAITIESGPR HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF Sbjct: 63 KLCEAVCPAQAITIESGPRLHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 122 Query: 127 ATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 ATETR+ELYYDKERLL+NGDRWESEIVRNIV DSPYR Sbjct: 123 ATETRKELYYDKERLLDNGDRWESEIVRNIVIDSPYR 159 >gi|71083590|ref|YP_266309.1| NADH dehydrogenase subunit I [Candidatus Pelagibacter ubique HTCC1062] gi|91761989|ref|ZP_01263954.1| NADH dehydrogenase subunit I [Candidatus Pelagibacter ubique HTCC1002] gi|115502537|sp|Q4FM83|NUOI_PELUB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|71062703|gb|AAZ21706.1| NADH Dehydrogenase I Chain I [Candidatus Pelagibacter ubique HTCC1062] gi|91717791|gb|EAS84441.1| NADH dehydrogenase subunit I [Candidatus Pelagibacter ubique HTCC1002] Length = 161 Score = 176 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 110/163 (67%), Positives = 134/163 (82%), Gaps = 2/163 (1%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M+I +FL +F+G + ++ FK+K TINYPFEKG SPRFRGEHALRRYPNGE Sbjct: 1 MKI-SRIFKTIFLLDFLGGLNIAIKEIFKSKKTINYPFEKGKISPRFRGEHALRRYPNGE 59 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPAQAITIES R G+R+T RYDIDM+KCIYCGLC+E+CPVDAIV+ Sbjct: 60 ERCIACKLCEAVCPAQAITIESSERAD-GSRKTTRYDIDMMKCIYCGLCEESCPVDAIVQ 118 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEF+TETR+ELYY+KE+LL+NGDRWE+ + NI D+ +R Sbjct: 119 GPNFEFSTETREELYYNKEKLLDNGDRWENVLAANIKADNSHR 161 >gi|163746211|ref|ZP_02153570.1| NADH dehydrogenase subunit I [Oceanibulbus indolifex HEL-45] gi|161380956|gb|EDQ05366.1| NADH dehydrogenase subunit I [Oceanibulbus indolifex HEL-45] Length = 164 Score = 176 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 118/158 (74%), Positives = 131/158 (82%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 + L ++ AF L +RYFF KTTINYP EKG SPRFRGEHALRRYPNGEERCIA Sbjct: 8 RAAKYFLLADYAKAFMLGMRYFFAPKTTINYPHEKGPLSPRFRGEHALRRYPNGEERCIA 67 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEAICPAQAITI++ R DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE Sbjct: 68 CKLCEAICPAQAITIDAEAR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 126 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 F+TETR+ELYYDK +LL+NGDRWESEI RN+ D+PYR Sbjct: 127 FSTETREELYYDKAKLLDNGDRWESEIARNLEMDAPYR 164 >gi|114330933|ref|YP_747155.1| NADH dehydrogenase subunit I [Nitrosomonas eutropha C91] gi|122314151|sp|Q0AHJ2|NUOI_NITEC RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|114307947|gb|ABI59190.1| NADH dehydrogenase subunit I [Nitrosomonas eutropha C91] Length = 162 Score = 176 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 94/163 (57%), Positives = 111/163 (68%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + + L E + + RY F K T++YP EK SPRFRG HALRRYPNGE Sbjct: 1 MERIKRFLKSFLLFELLKGMKVTGRYLFAPKVTVHYPEEKTPQSPRFRGLHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIES R GTRRT RYDID+IKCI+CG C+EACPVDAIVE Sbjct: 61 ERCIACKLCEAVCPALAITIESEQRDD-GTRRTTRYDIDLIKCIFCGFCEEACPVDAIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +L Y KE LL GDR+E +I ++ D+PYR Sbjct: 120 TRVLEYHGEVRGDLTYTKEMLLAVGDRYEEQIAKDRAADAPYR 162 >gi|302833042|ref|XP_002948085.1| NADH:ubiquinone oxidoreductase subunit 8 [Volvox carteri f. nagariensis] gi|300266887|gb|EFJ51073.1| NADH:ubiquinone oxidoreductase subunit 8 [Volvox carteri f. nagariensis] Length = 229 Score = 176 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 112/161 (69%), Positives = 123/161 (76%), Gaps = 1/161 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 + + L L E L FF K TI YPFEKG SPRFRGEHALRRYP GEER Sbjct: 70 VLDDSAHMLLLTEVWRGMAYTLGAFFDKKVTIMYPFEKGQVSPRFRGEHALRRYPTGEER 129 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEAICPAQAITIE+ R DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGP Sbjct: 130 CIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 188 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 NFEF+TETR+EL YDK++LL NGDRWE+EI N+ T+S YR Sbjct: 189 NFEFSTETREELLYDKQKLLENGDRWETEIATNLRTESLYR 229 >gi|187923348|ref|YP_001894990.1| NADH dehydrogenase subunit I [Burkholderia phytofirmans PsJN] gi|187714542|gb|ACD15766.1| NADH-quinone oxidoreductase, chain I [Burkholderia phytofirmans PsJN] Length = 162 Score = 176 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 91/163 (55%), Positives = 110/163 (67%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + FL E + L RY F+ K T+ +P EK SPRFRG HALRRY NGE Sbjct: 1 MTAIQNFFKTFFLTELLKGLALTGRYTFQRKVTVQFPEEKTPISPRFRGLHALRRYENGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIES R + TRRT RYDID+ KCI+CG C+E+CPVD+IVE Sbjct: 61 ERCIACKLCEAVCPALAITIESETRADN-TRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +LY+ K+ LL GDR+E+EI N D+PYR Sbjct: 120 THILEYHGEKRGDLYFTKDMLLAVGDRYEAEIAANKAADAPYR 162 >gi|319794660|ref|YP_004156300.1| NADH-quinone oxidoreductase, chain i [Variovorax paradoxus EPS] gi|315597123|gb|ADU38189.1| NADH-quinone oxidoreductase, chain I [Variovorax paradoxus EPS] Length = 181 Score = 176 bits (445), Expect = 1e-42, Method: Composition-based stats. Identities = 87/160 (54%), Positives = 106/160 (66%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + + L E + +Y F K T+ +P EK SPRFRG HALRRY NGEERC Sbjct: 23 LKDFLGSFMLFELFKGLAITGKYAFARKITVQFPEEKTPLSPRFRGLHALRRYENGEERC 82 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEA+CPA AITIES R G+RRT RYDID+ KCI+CG C+E+CPVD+IVE Sbjct: 83 IACKLCEAVCPALAITIESDVRDD-GSRRTTRYDIDLTKCIFCGFCEESCPVDSIVETHI 141 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FE+ E R +LY+ K+ LL GDR+E EI N D+ YR Sbjct: 142 FEYHGEKRGDLYFTKDMLLAVGDRYEKEIAANKAADAKYR 181 >gi|224824815|ref|ZP_03697922.1| NADH-quinone oxidoreductase, chain I [Lutiella nitroferrum 2002] gi|224603308|gb|EEG09484.1| NADH-quinone oxidoreductase, chain I [Lutiella nitroferrum 2002] Length = 162 Score = 175 bits (444), Expect = 1e-42, Method: Composition-based stats. Identities = 94/163 (57%), Positives = 106/163 (65%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M R L E V L R+FF K T+ +P EK SPRFRG HA RRY NGE Sbjct: 1 MDTIRNFFKTFLLVELVQGLMLTGRHFFARKITVQFPEEKTPLSPRFRGLHAQRRYANGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIES R GTRRT RYDID+ KCI+CG C+EACPVDAIVE Sbjct: 61 ERCIACKLCEAVCPAMAITIESEQRDD-GTRRTSRYDIDLTKCIFCGFCEEACPVDAIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FE+ E R +LYY K LL GD++ESEI D+ YR Sbjct: 120 THIFEYHGEKRGDLYYTKPMLLAIGDKYESEIAARKAADAKYR 162 >gi|71906596|ref|YP_284183.1| NADH dehydrogenase subunit I [Dechloromonas aromatica RCB] gi|115502525|sp|Q47HG8|NUOI_DECAR RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|71846217|gb|AAZ45713.1| NADH dehydrogenase subunit I [Dechloromonas aromatica RCB] Length = 162 Score = 175 bits (444), Expect = 1e-42, Method: Composition-based stats. Identities = 95/163 (58%), Positives = 115/163 (70%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + + LFLKE + + +YFF K T+ YP EK S RFRG HALRRYPNGE Sbjct: 1 MGSMKEIFNSLFLKELLKGMSVTGKYFFARKITVQYPEEKTPQSFRFRGLHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPA AITIE+ PR G+RRT RYDID+ KCI+CG C+EACPVDA+VE Sbjct: 61 ERCIACKLCEAICPALAITIEAEPRDD-GSRRTTRYDIDLTKCIFCGFCEEACPVDAVVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FE+ E R +LYY K+ LL NGDR+E +I ++ D+ YR Sbjct: 120 TRIFEYHGEKRGDLYYTKQMLLANGDRYEDQIAKDRELDASYR 162 >gi|332526755|ref|ZP_08402857.1| NADH dehydrogenase subunit I [Rubrivivax benzoatilyticus JA2] gi|332111158|gb|EGJ11190.1| NADH dehydrogenase subunit I [Rubrivivax benzoatilyticus JA2] Length = 165 Score = 175 bits (444), Expect = 1e-42, Method: Composition-based stats. Identities = 91/160 (56%), Positives = 107/160 (66%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + +S L E L R+F TI YP EK SPRFRG HALRRY NGEERC Sbjct: 7 IKDVLSSFMLAEIFKGMALTGRHFLSKAITIQYPEEKTPLSPRFRGLHALRRYENGEERC 66 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEA+CPA AITIES R GTRRT RYDID+ KCI+CG C+E+CPVD+IVE Sbjct: 67 IACKLCEAVCPAMAITIESDVRAD-GTRRTTRYDIDLTKCIFCGFCEESCPVDSIVETHI 125 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FE+ E R +LY+ K+ LL GDR+E E+ N D+PYR Sbjct: 126 FEYHGEKRGDLYFTKDMLLAVGDRYEKEVAANREADAPYR 165 >gi|114321111|ref|YP_742794.1| NADH dehydrogenase subunit I [Alkalilimnicola ehrlichii MLHE-1] gi|122311310|sp|Q0A783|NUOI_ALHEH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|114227505|gb|ABI57304.1| NADH dehydrogenase subunit I [Alkalilimnicola ehrlichii MLHE-1] Length = 163 Score = 175 bits (444), Expect = 1e-42, Method: Composition-based stats. Identities = 93/163 (57%), Positives = 112/163 (68%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M R V L E + L ++F T+ YP EK SPRFRG HALRRYPNGE Sbjct: 1 MTALRDYVKSFLLVELLQGLRLTGKHFLSRSVTLEYPEEKTPKSPRFRGMHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIE+GPR DGTRRT Y+IDM KCIYCG C+E+CPVD+IVE Sbjct: 61 ERCIACKLCEAVCPALAITIEAGPREDDGTRRTTLYEIDMFKCIYCGFCEESCPVDSIVE 120 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R+E +DK RLL NGD++E++I + D+PYR Sbjct: 121 TREHEYHMEHREERVFDKARLLANGDKYEAQIAADRAADAPYR 163 >gi|302383058|ref|YP_003818881.1| NADH-quinone oxidoreductase, chain I [Brevundimonas subvibrioides ATCC 15264] gi|302193686|gb|ADL01258.1| NADH-quinone oxidoreductase, chain I [Brevundimonas subvibrioides ATCC 15264] Length = 163 Score = 175 bits (444), Expect = 2e-42, Method: Composition-based stats. Identities = 117/158 (74%), Positives = 128/158 (81%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 L + VGAF L +R FF+ K TINYPFE+ SPRFRGEHALRRY NGEERCIA Sbjct: 7 QAAKGAMLIDMVGAFGLTMREFFRPKHTINYPFERNPQSPRFRGEHALRRYANGEERCIA 66 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEAICPAQAITIES PR G+RRT RYDIDM+KCIYCGLCQEACPVDAIVEGPN E Sbjct: 67 CKLCEAICPAQAITIESEPRSD-GSRRTTRYDIDMVKCIYCGLCQEACPVDAIVEGPNSE 125 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FATETR+EL YDK RLL+NGDRWE +I RN+ D+PYR Sbjct: 126 FATETREELLYDKARLLDNGDRWERQIARNLELDAPYR 163 >gi|307730332|ref|YP_003907556.1| NADH-quinone oxidoreductase, chain I [Burkholderia sp. CCGE1003] gi|307584867|gb|ADN58265.1| NADH-quinone oxidoreductase, chain I [Burkholderia sp. CCGE1003] Length = 162 Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats. Identities = 94/163 (57%), Positives = 110/163 (67%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + FL E V L RY F+ K T+ +P EK SPRFRG HALRRY NGE Sbjct: 1 MTAIQNFFKTFFLTELVKGLALTGRYTFQRKVTVQFPEEKTPISPRFRGLHALRRYENGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIES R D TRRT RYDID+ KCI+CG C+E+CPVD+IVE Sbjct: 61 ERCIACKLCEAVCPALAITIESETR-EDNTRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +LY+ KE LL GDR+E+EI N D+PYR Sbjct: 120 THILEYHGEKRGDLYFTKEMLLAVGDRYEAEIAANKAADAPYR 162 >gi|91782620|ref|YP_557826.1| NADH dehydrogenase subunit I [Burkholderia xenovorans LB400] gi|296160637|ref|ZP_06843452.1| NADH-quinone oxidoreductase, chain I [Burkholderia sp. Ch1-1] gi|115502523|sp|Q142G5|NUOI_BURXL RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|91686574|gb|ABE29774.1| NADH dehydrogenase subunit I [Burkholderia xenovorans LB400] gi|295889163|gb|EFG68966.1| NADH-quinone oxidoreductase, chain I [Burkholderia sp. Ch1-1] Length = 162 Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats. Identities = 91/163 (55%), Positives = 110/163 (67%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + FL E + L RY F+ K T+ +P EK SPRFRG HALRRY NGE Sbjct: 1 MTAIQNFFKTFFLTELLKGLALTGRYTFQRKVTVQFPEEKTPISPRFRGLHALRRYENGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIES R + TRRT RYDID+ KCI+CG C+E+CPVD+IVE Sbjct: 61 ERCIACKLCEAVCPALAITIESETRADN-TRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +LY+ K+ LL GDR+E+EI N D+PYR Sbjct: 120 THILEYHGEKRGDLYFTKDMLLAVGDRYETEIAANKAADAPYR 162 >gi|186476756|ref|YP_001858226.1| NADH dehydrogenase subunit I [Burkholderia phymatum STM815] gi|184193215|gb|ACC71180.1| NADH-quinone oxidoreductase, chain I [Burkholderia phymatum STM815] Length = 162 Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats. Identities = 91/163 (55%), Positives = 110/163 (67%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + FL E + L RY F+ K T+ +P EK SPRFRG HALRRY NGE Sbjct: 1 MTAIQNFFKTFFLTELLKGLALTGRYTFQRKITVQFPEEKTPISPRFRGLHALRRYENGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIES R + TRRT RYDID+ KCI+CG C+E+CPVD+IVE Sbjct: 61 ERCIACKLCEAVCPALAITIESETRADN-TRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +LY+ K+ LL GDR+E+EI N D+PYR Sbjct: 120 THILEYHGEKRGDLYFTKDMLLAVGDRYEAEIAANKAADAPYR 162 >gi|170696391|ref|ZP_02887520.1| NADH-quinone oxidoreductase, chain I [Burkholderia graminis C4D1M] gi|170138719|gb|EDT06918.1| NADH-quinone oxidoreductase, chain I [Burkholderia graminis C4D1M] Length = 162 Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats. Identities = 92/163 (56%), Positives = 110/163 (67%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + FL E + L RY F+ K T+ +P EK SPRFRG HALRRY NGE Sbjct: 1 MTAIQNFFKTFFLTELIKGLALTGRYTFQRKVTVQFPEEKTPISPRFRGLHALRRYENGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIES R D TRRT RYDID+ KCI+CG C+E+CPVD+IVE Sbjct: 61 ERCIACKLCEAVCPALAITIESETR-EDNTRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +LY+ K+ LL GDR+E+EI N D+PYR Sbjct: 120 THILEYHGEKRGDLYFTKDMLLAVGDRYEAEIAANKAADAPYR 162 >gi|241949545|ref|XP_002417495.1| NADH-ubiquinone oxidoreductase 23 subunit, mitochondrial precursor, putative; mitochondrial complex I, NUIM subunit, putative [Candida dubliniensis CD36] gi|223640833|emb|CAX45148.1| NADH-ubiquinone oxidoreductase 23 subunit, mitochondrial precursor, putative [Candida dubliniensis CD36] Length = 247 Score = 175 bits (443), Expect = 2e-42, Method: Composition-based stats. Identities = 105/160 (65%), Positives = 122/160 (76%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 FLFL E ++CL +F+A TI YPFEKG SPRFRGEHALRRYP+GEERC Sbjct: 89 LSKATKFLFLSEIARGMYICLEMYFRAPYTIYYPFEKGPISPRFRGEHALRRYPSGEERC 148 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAITIE+ R G+RRT +YDIDM KCIYCG CQE+CPVDAIVE PN Sbjct: 149 IACKLCEAICPAQAITIEAEERID-GSRRTYKYDIDMTKCIYCGYCQESCPVDAIVETPN 207 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E++T TR+EL Y+KE+LL NGD+WE E+ I D+PYR Sbjct: 208 VEYSTATREELLYNKEKLLENGDKWEQELQYCIDADAPYR 247 >gi|239816475|ref|YP_002945385.1| NADH dehydrogenase subunit I [Variovorax paradoxus S110] gi|239803052|gb|ACS20119.1| NADH-quinone oxidoreductase, chain I [Variovorax paradoxus S110] Length = 181 Score = 174 bits (442), Expect = 2e-42, Method: Composition-based stats. Identities = 87/160 (54%), Positives = 106/160 (66%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + + L E + +Y F K T+ +P EK SPRFRG HALRRY NGEERC Sbjct: 23 LKDFLGSFMLFELFKGLAITGKYAFARKITVQFPEEKTPLSPRFRGLHALRRYENGEERC 82 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEA+CPA AITIES R G+RRT RYDID+ KCI+CG C+E+CPVD+IVE Sbjct: 83 IACKLCEAVCPALAITIESDVRDD-GSRRTTRYDIDLTKCIFCGFCEESCPVDSIVETHI 141 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FE+ E R +LY+ K+ LL GDR+E EI N D+ YR Sbjct: 142 FEYHGEKRGDLYFTKDMLLAVGDRYEKEIAANKAADAKYR 181 >gi|332029694|gb|EGI69573.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial [Acromyrmex echinatior] Length = 197 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 109/161 (67%), Positives = 123/161 (76%), Gaps = 1/161 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 I + +FL E + L + + TINYPFEKG SPRFRGEHALRRYP+GEER Sbjct: 38 IMEAATTHMFLLEIIRGMGLAVSQILREPATINYPFEKGPLSPRFRGEHALRRYPSGEER 97 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEAICPAQAITIE+ R G+RRT RYDIDM KCIYCG CQEACPVDAIVEGP Sbjct: 98 CIACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMSKCIYCGFCQEACPVDAIVEGP 156 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 NFEF+TET +E+ Y+KE+LLNNGD+WESEI NI D YR Sbjct: 157 NFEFSTETHEEMLYNKEKLLNNGDKWESEIASNIHADHLYR 197 >gi|170581266|ref|XP_001895608.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial precursor [Brugia malayi] gi|158597368|gb|EDP35534.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial precursor, putative [Brugia malayi] Length = 206 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 105/160 (65%), Positives = 125/160 (78%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 FR + ++F+ E + + + ++F TINYPFEKG S RFRGEHALRRYP+GEERC Sbjct: 48 FRKAMHYMFMTELIRGMGIIVGHYFMEPATINYPFEKGPLSSRFRGEHALRRYPSGEERC 107 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAITIE+ R G+RRT RYDIDM KCIYCGLCQEACPVDAIVEGPN Sbjct: 108 IACKLCEAICPAQAITIEAEARPD-GSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGPN 166 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FE++TET +EL Y+KE+LL NGDRWE E+ N+ + YR Sbjct: 167 FEYSTETHEELLYNKEKLLLNGDRWEPELAANLQAEYLYR 206 >gi|121604338|ref|YP_981667.1| NADH dehydrogenase subunit I [Polaromonas naphthalenivorans CJ2] gi|156633538|sp|A1VM68|NUOI_POLNA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|120593307|gb|ABM36746.1| NADH dehydrogenase subunit I [Polaromonas naphthalenivorans CJ2] Length = 165 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 92/159 (57%), Positives = 109/159 (68%), Gaps = 1/159 (0%) Query: 5 RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64 + VS L E + L +Y F K TI +P EK SPRFRG HALRRY NGEERCI Sbjct: 8 KDFVSSFMLTELLKGMALTGKYMFSRKITIQFPEEKTPLSPRFRGLHALRRYENGEERCI 67 Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 ACKLCEA+CPA AITIES R DG+RRT RYDID+ KCI+CG C+E+CPVD+IVE Sbjct: 68 ACKLCEAVCPALAITIESDVR-EDGSRRTSRYDIDLTKCIFCGFCEESCPVDSIVETHIL 126 Query: 125 EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +LY+ KE LL GDR+E+EI N D+ YR Sbjct: 127 EYHGEKRGDLYFTKEMLLAVGDRYENEIAANRAADAKYR 165 >gi|261856542|ref|YP_003263825.1| NADH-quinone oxidoreductase, chain I [Halothiobacillus neapolitanus c2] gi|261837011|gb|ACX96778.1| NADH-quinone oxidoreductase, chain I [Halothiobacillus neapolitanus c2] Length = 162 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 96/163 (58%), Positives = 110/163 (67%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M F+ V FL E + +YFF K T+ YP EK SPRFRG HALRRY NGE Sbjct: 1 MNAFKQFVKTWFLWELFLGLSVTGKYFFGRKFTVQYPEEKTPMSPRFRGLHALRRYANGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIES R GTRRT RYDID+ KCIYCG C+EACPVD+IVE Sbjct: 61 ERCIACKLCEAVCPALAITIESEQRAD-GTRRTTRYDIDLFKCIYCGFCEEACPVDSIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FE+ E R E KE+LL GDR ES+I + + D+PYR Sbjct: 120 TRVFEYHFEARGEQIMTKEKLLEIGDRLESQIAADRLADAPYR 162 >gi|323525444|ref|YP_004227597.1| NADH-quinone oxidoreductase subunit I [Burkholderia sp. CCGE1001] gi|323382446|gb|ADX54537.1| NADH-quinone oxidoreductase, chain I [Burkholderia sp. CCGE1001] Length = 162 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 94/163 (57%), Positives = 110/163 (67%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + FL E V L RY F+ K T+ +P EK SPRFRG HALRRY NGE Sbjct: 1 MTAIQNFFKTFFLTELVKGLALTGRYTFQRKVTVQFPEEKTPISPRFRGLHALRRYENGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIES R D TRRT RYDID+ KCI+CG C+E+CPVD+IVE Sbjct: 61 ERCIACKLCEAVCPALAITIESETR-EDNTRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +LY+ KE LL GDR+E+EI N D+PYR Sbjct: 120 THILEYHGEKRGDLYFTKEMLLAVGDRYETEIAANKAADAPYR 162 >gi|257095311|ref|YP_003168952.1| NADH dehydrogenase subunit I [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047835|gb|ACV37023.1| NADH-quinone oxidoreductase, chain I [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 162 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 93/163 (57%), Positives = 111/163 (68%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + + L L+E + RY F K T+ YP EK S RFRG HALRRYPNGE Sbjct: 1 MGSMKEVFNSLLLRELFKGMSVTGRYMFARKITVQYPEEKTPQSFRFRGLHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIES R G+RRT RYDID+ KCI+CG C+EACPVDAIVE Sbjct: 61 ERCIACKLCEAVCPAMAITIESDQRDD-GSRRTTRYDIDLTKCIFCGFCEEACPVDAIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 +E+ ETR +LYY K LL NGDR+E++I + D+ YR Sbjct: 120 TRIYEYHGETRGDLYYTKPMLLANGDRYEAQIAEDRELDAKYR 162 >gi|255728045|ref|XP_002548948.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial precursor [Candida tropicalis MYA-3404] gi|240133264|gb|EER32820.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial precursor [Candida tropicalis MYA-3404] Length = 231 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 102/160 (63%), Positives = 121/160 (75%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 F FL E ++C+ +F++ TI YPFEKG SPRFRGEHALRRYP+GEERC Sbjct: 73 LSKATKFFFLSEIARGMYICMEMYFRSPYTIYYPFEKGPISPRFRGEHALRRYPSGEERC 132 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAITIE+ R G+RRT +YDIDM KCIYCG CQE+CPVDAIVE PN Sbjct: 133 IACKLCEAICPAQAITIEAEERID-GSRRTYKYDIDMTKCIYCGYCQESCPVDAIVETPN 191 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E++T TR+EL Y+KE+LL NGD+WE E+ I D+PYR Sbjct: 192 VEYSTATREELLYNKEKLLENGDKWEQELQYCIDADAPYR 231 >gi|167646786|ref|YP_001684449.1| NADH dehydrogenase subunit I [Caulobacter sp. K31] gi|167349216|gb|ABZ71951.1| NADH-quinone oxidoreductase, chain I [Caulobacter sp. K31] Length = 164 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 112/163 (68%), Positives = 130/163 (79%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M+ + + L +F GAF L ++Y K T+ YP E+G SPRFRGEHALRRYP+GE Sbjct: 3 MQRISQAIKGVALLDFAGAFGLGIKYMLAPKKTVIYPNERGPQSPRFRGEHALRRYPSGE 62 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE+ PR G+RRT RYDIDM+KCIYCGLCQEACPVDAIVE Sbjct: 63 ERCIACKLCEAICPAQAITIEAEPRDD-GSRRTTRYDIDMVKCIYCGLCQEACPVDAIVE 121 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPN EFA ETR+ELYYDKE+LL+NGDRWE I +N+ D+PYR Sbjct: 122 GPNIEFAVETREELYYDKEKLLDNGDRWERLIAKNLELDAPYR 164 >gi|329850720|ref|ZP_08265565.1| NADH-quinone oxidoreductase subunit 9 [Asticcacaulis biprosthecum C19] gi|328841035|gb|EGF90606.1| NADH-quinone oxidoreductase subunit 9 [Asticcacaulis biprosthecum C19] Length = 159 Score = 174 bits (442), Expect = 3e-42, Method: Composition-based stats. Identities = 117/156 (75%), Positives = 131/156 (83%), Gaps = 1/156 (0%) Query: 8 VSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACK 67 + L +FVGA FL ++Y F+ K TINYPFEKG SPRFRGEHALRRY NGEERCIACK Sbjct: 5 IKAALLLDFVGATFLAVKYMFRHKATINYPFEKGPISPRFRGEHALRRYANGEERCIACK 64 Query: 68 LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 LCEAICPAQAITIE+ PR G+RRT RYDIDM+KCIYCGLCQEACPVDAIVEGPNFEF+ Sbjct: 65 LCEAICPAQAITIEAEPRDD-GSRRTTRYDIDMVKCIYCGLCQEACPVDAIVEGPNFEFS 123 Query: 128 TETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 T+TR+EL YDK+RLL NGDRWE EI R + D+PYR Sbjct: 124 TDTREELLYDKDRLLANGDRWEREIARALELDAPYR 159 >gi|124266604|ref|YP_001020608.1| NADH dehydrogenase subunit I [Methylibium petroleiphilum PM1] gi|156633524|sp|A2SFN4|NUOI_METPP RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|124259379|gb|ABM94373.1| NADH dehydrogenase [Methylibium petroleiphilum PM1] Length = 165 Score = 174 bits (441), Expect = 3e-42, Method: Composition-based stats. Identities = 88/160 (55%), Positives = 108/160 (67%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + + FL E + L R+F T+ +P EK SPRFRG HALRRY NGEERC Sbjct: 7 IKEFFNTFFLLELLKGMKLTGRHFLSPAITVQFPEEKTPLSPRFRGLHALRRYENGEERC 66 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEA+CPA AITIES R G+RRT RYDID+ KCI+CG C+E+CPVD+IVE Sbjct: 67 IACKLCEAVCPALAITIESEVRDD-GSRRTTRYDIDLTKCIFCGFCEESCPVDSIVETHI 125 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FE+ E R +LY+ K+ LL GDR+E+EI N D+ YR Sbjct: 126 FEYHGEKRGDLYFTKDMLLAVGDRYENEIAANKEADAAYR 165 >gi|221234957|ref|YP_002517393.1| NADH dehydrogenase subunit I [Caulobacter crescentus NA1000] gi|220964129|gb|ACL95485.1| NADH-quinone oxidoreductase chain I [Caulobacter crescentus NA1000] Length = 193 Score = 174 bits (441), Expect = 3e-42, Method: Composition-based stats. Identities = 114/160 (71%), Positives = 128/160 (80%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 V L +F GAF L ++Y K T+ YP E+ SPRFRGEHALRRYP+GEERC Sbjct: 35 ITQAVKGAALLDFAGAFGLAMKYMVAPKKTVIYPNERNPQSPRFRGEHALRRYPSGEERC 94 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAITIE+ PR DG+RRT RYDIDM+KCIYCGLCQEACPVDAIVEGPN Sbjct: 95 IACKLCEAICPAQAITIEAEPR-EDGSRRTTRYDIDMVKCIYCGLCQEACPVDAIVEGPN 153 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 EFATETR+ELYYDKERLL+NGDRWE I +N+ D+PYR Sbjct: 154 TEFATETREELYYDKERLLDNGDRWERLIAKNLELDAPYR 193 >gi|221068604|ref|ZP_03544709.1| NADH-quinone oxidoreductase, chain I [Comamonas testosteroni KF-1] gi|264677206|ref|YP_003277112.1| NADH-quinone oxidoreductase, chain I [Comamonas testosteroni CNB-2] gi|299530750|ref|ZP_07044165.1| NADH dehydrogenase subunit I [Comamonas testosteroni S44] gi|220713627|gb|EED68995.1| NADH-quinone oxidoreductase, chain I [Comamonas testosteroni KF-1] gi|262207718|gb|ACY31816.1| NADH-quinone oxidoreductase, chain I [Comamonas testosteroni CNB-2] gi|298721266|gb|EFI62208.1| NADH dehydrogenase subunit I [Comamonas testosteroni S44] Length = 169 Score = 174 bits (441), Expect = 3e-42, Method: Composition-based stats. Identities = 90/160 (56%), Positives = 109/160 (68%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 F+ + L E L RY F+ K T+ +P EK SPRFRG HALRRY NGEERC Sbjct: 11 FKDFLKSFMLWELAKGMALTGRYTFRRKITVQFPEEKTPQSPRFRGLHALRRYENGEERC 70 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEA+CPA AITIES R G+RRT RYDID+ KCI+CG C+E+CPVD+IVE Sbjct: 71 IACKLCEAVCPAMAITIESDVRDD-GSRRTTRYDIDLTKCIFCGFCEESCPVDSIVETHI 129 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FE+ E R +LY+ K+ LL GDR+E+EI N D+ YR Sbjct: 130 FEYHGEKRGDLYFTKDMLLAVGDRYEAEIAANKAADAKYR 169 >gi|83858406|ref|ZP_00951928.1| NADH dehydrogenase subunit I [Oceanicaulis alexandrii HTCC2633] gi|83853229|gb|EAP91081.1| NADH dehydrogenase subunit I [Oceanicaulis alexandrii HTCC2633] Length = 162 Score = 174 bits (441), Expect = 3e-42, Method: Composition-based stats. Identities = 119/163 (73%), Positives = 131/163 (80%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + L +F GAF L +RYFF+ K TINYPFEKG SPRFRG+HALRRY NGE Sbjct: 1 MSRIAQTLRGAALMDFWGAFALGMRYFFRKKPTINYPFEKGRLSPRFRGQHALRRYANGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE+ PR G+RRT RYDIDM KCIYCG CQEACPVDAIVE Sbjct: 61 ERCIACKLCEAICPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGYCQEACPVDAIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEFATETR+ELYYDK +LL+NGDRWE EI RN+ D+ YR Sbjct: 120 GPNFEFATETREELYYDKAKLLDNGDRWEREIARNLELDARYR 162 >gi|294677068|ref|YP_003577683.1| NADH-quinone oxidoreductase subunit I [Rhodobacter capsulatus SB 1003] gi|1171863|sp|P42031|NUOI_RHOCA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|3282573|gb|AAC24999.1| NUOI [Rhodobacter capsulatus] gi|294475888|gb|ADE85276.1| NADH-quinone oxidoreductase, I subunit [Rhodobacter capsulatus SB 1003] gi|1586522|prf||2204231C NADH ubiquinone oxidoreductase Length = 163 Score = 174 bits (441), Expect = 3e-42, Method: Composition-based stats. Identities = 111/158 (70%), Positives = 127/158 (80%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 + L +F+ F L ++YF K T+NYP EKG SPRFRGEHALRRYP+GEERCIA Sbjct: 7 RAAKYFVLWDFIKGFALGMKYFVAPKPTLNYPHEKGPLSPRFRGEHALRRYPSGEERCIA 66 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEAICPAQAITI++ PR G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE Sbjct: 67 CKLCEAICPAQAITIDAEPRDD-GSRRTTRYDIDMTKCIYCGYCQEACPVDAIVEGPNFE 125 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 +ATETR+EL+Y KE+LL NG RWE+EI RNI D+PYR Sbjct: 126 YATETREELFYTKEKLLENGARWEAEIARNIEMDAPYR 163 >gi|238501446|ref|XP_002381957.1| NADH-quinone oxidoreductase, 23 kDa subunit, putative [Aspergillus flavus NRRL3357] gi|220692194|gb|EED48541.1| NADH-quinone oxidoreductase, 23 kDa subunit, putative [Aspergillus flavus NRRL3357] Length = 226 Score = 174 bits (441), Expect = 4e-42, Method: Composition-based stats. Identities = 103/160 (64%), Positives = 117/160 (73%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + + E ++ L FF+ TI YPFEKG SPRFRGEHALRRYP GEERC Sbjct: 68 LDKASKYFLMSEIFRGMYVVLEQFFRPPYTIFYPFEKGPISPRFRGEHALRRYPTGEERC 127 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAITIE+ R DG+RRT RYDIDM KCIYCG CQE+CPVDAIVE N Sbjct: 128 IACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGYCQESCPVDAIVETAN 186 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ATETR+EL Y+KE+LL NGD+WE EI D+PYR Sbjct: 187 AEYATETREELLYNKEKLLANGDKWEPEIAAAARADAPYR 226 >gi|169769016|ref|XP_001818978.1| NADH-ubiquinone oxidoreductase subunit [Aspergillus oryzae RIB40] gi|83766836|dbj|BAE56976.1| unnamed protein product [Aspergillus oryzae] Length = 226 Score = 174 bits (440), Expect = 4e-42, Method: Composition-based stats. Identities = 103/160 (64%), Positives = 117/160 (73%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + + E ++ L FF+ TI YPFEKG SPRFRGEHALRRYP GEERC Sbjct: 68 LDKASKYFLMSEIFRGMYVVLEQFFRPPYTIFYPFEKGPISPRFRGEHALRRYPTGEERC 127 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAITIE+ R DG+RRT RYDIDM KCIYCG CQE+CPVDAIVE N Sbjct: 128 IACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGYCQESCPVDAIVETAN 186 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ATETR+EL Y+KE+LL NGD+WE EI D+PYR Sbjct: 187 AEYATETREELLYNKEKLLANGDKWEPEIAAAARADAPYR 226 >gi|323456536|gb|EGB12403.1| hypothetical protein AURANDRAFT_52238 [Aureococcus anophagefferens] Length = 214 Score = 174 bits (440), Expect = 4e-42, Method: Composition-based stats. Identities = 103/159 (64%), Positives = 117/159 (73%), Gaps = 1/159 (0%) Query: 5 RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64 LFL + + K K TINYPFEKG SPRFRGEHALRRYP+GEERCI Sbjct: 57 DRMAGVLFLTDIWRGIAITGEVVSKPKVTINYPFEKGPLSPRFRGEHALRRYPSGEERCI 116 Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 ACKLCEA+CPAQAITIE+ R G+R+T RYDIDM KCIYCG CQEACPVDAIVEGPN+ Sbjct: 117 ACKLCEAVCPAQAITIEAEARAD-GSRKTTRYDIDMTKCIYCGYCQEACPVDAIVEGPNY 175 Query: 125 EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 EF ET +EL YDKE+LLNNGD+WE I +N+ + YR Sbjct: 176 EFTAETHEELIYDKEKLLNNGDKWEFAIAKNLAAEHHYR 214 >gi|209548872|ref|YP_002280789.1| NADH dehydrogenase subunit I [Rhizobium leguminosarum bv. trifolii WSM2304] gi|226737409|sp|B5ZYM2|NUOI_RHILW RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|209534628|gb|ACI54563.1| NADH-quinone oxidoreductase, chain I [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 163 Score = 174 bits (440), Expect = 5e-42, Method: Composition-based stats. Identities = 129/150 (86%), Positives = 137/150 (91%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 KEF GAFFL +RYFF+ K TINYPFEKG SPRFRGEHALRRYPNGEERCIACKLCEAIC Sbjct: 14 KEFFGAFFLSMRYFFRQKATINYPFEKGPVSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 Query: 74 PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 PAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVEGPNFEFATETR+E Sbjct: 74 PAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVEGPNFEFATETREE 133 Query: 134 LYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 LY+DK RLL+NGDRWE EI RNI DSPYR Sbjct: 134 LYFDKARLLDNGDRWEREIARNIAIDSPYR 163 >gi|259484821|tpe|CBF81370.1| TPA: hypothetical protein similar to : Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (Broad) [Aspergillus nidulans FGSC A4] Length = 224 Score = 174 bits (440), Expect = 5e-42, Method: Composition-based stats. Identities = 101/160 (63%), Positives = 116/160 (72%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + + E ++ L FF+ TI YPFEKG SPRFRGEHALRRYP GEERC Sbjct: 66 LDKASKYFLMAEIFRGMYVVLEQFFRPPYTIFYPFEKGPISPRFRGEHALRRYPTGEERC 125 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEA+CPAQAITIE+ R G+RRT RYDIDM KCIYCG CQE+CPVDAIVE N Sbjct: 126 IACKLCEAVCPAQAITIEAEERVD-GSRRTTRYDIDMTKCIYCGYCQESCPVDAIVETAN 184 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ATETR+EL Y+KE+LL NGD+WE EI D+PYR Sbjct: 185 AEYATETREELLYNKEKLLANGDKWEPEIAAAARADAPYR 224 >gi|294656335|ref|XP_458595.2| DEHA2D02948p [Debaryomyces hansenii CBS767] gi|199431392|emb|CAG86730.2| DEHA2D02948p [Debaryomyces hansenii] Length = 243 Score = 174 bits (440), Expect = 5e-42, Method: Composition-based stats. Identities = 105/160 (65%), Positives = 123/160 (76%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 F FL E ++CL +F+A TI YPFEKG SPRFRGEHALRRYP+GEERC Sbjct: 85 LSKATKFFFLNEIARGMYVCLEMYFRAPYTIYYPFEKGPISPRFRGEHALRRYPSGEERC 144 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAITIE+ R G+RRTV+YDIDM KCIYCG CQ++CPVDAIVE PN Sbjct: 145 IACKLCEAICPAQAITIEAEERMD-GSRRTVKYDIDMTKCIYCGYCQDSCPVDAIVESPN 203 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E++TETR+EL Y+KE+LL NGD+WE E+ I D+PYR Sbjct: 204 VEYSTETREELLYNKEKLLENGDKWEQELQYCIDADAPYR 243 >gi|255942799|ref|XP_002562168.1| Pc18g03280 [Penicillium chrysogenum Wisconsin 54-1255] gi|211586901|emb|CAP94552.1| Pc18g03280 [Penicillium chrysogenum Wisconsin 54-1255] Length = 220 Score = 174 bits (440), Expect = 5e-42, Method: Composition-based stats. Identities = 103/160 (64%), Positives = 118/160 (73%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + + E ++ L FF+ TI YPFEKG SPRFRGEHALRRYP GEERC Sbjct: 62 LDKASKYFLMAEIFRGMYVVLEQFFRPPYTIFYPFEKGPISPRFRGEHALRRYPTGEERC 121 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAITIE+ R DG+RRT RYDIDM KCIYCG CQE+CPVDAIVE N Sbjct: 122 IACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGYCQESCPVDAIVETSN 180 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ATETR+EL Y+KE+LL+NGD+WE EI D+PYR Sbjct: 181 AEYATETREELLYNKEKLLSNGDKWEPEIAAAARADAPYR 220 >gi|307195743|gb|EFN77575.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial [Harpegnathos saltator] Length = 152 Score = 174 bits (440), Expect = 5e-42, Method: Composition-based stats. Identities = 107/153 (69%), Positives = 122/153 (79%), Gaps = 1/153 (0%) Query: 11 LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70 +F+ E + + + F+ TINYPFEKG SPRFRGEHALRRYP+GEERCIACKLCE Sbjct: 1 MFMLEIFRGLGVAVSHMFREPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCE 60 Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 AICPAQAITIE+ R G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFEF+TET Sbjct: 61 AICPAQAITIEAEERID-GSRRTTRYDIDMSKCIYCGFCQEACPVDAIVEGPNFEFSTET 119 Query: 131 RQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 +E+ Y+KE+LLNNGD+WESEI NI D YR Sbjct: 120 HEEMLYNKEKLLNNGDKWESEIASNIHADHLYR 152 >gi|297285975|ref|XP_002802906.1| PREDICTED: hypothetical protein LOC716487 [Macaca mulatta] Length = 360 Score = 174 bits (440), Expect = 5e-42, Method: Composition-based stats. Identities = 97/153 (63%), Positives = 109/153 (71%), Gaps = 13/153 (8%) Query: 11 LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70 L E + L Y F+ TINYPFEKG SPRFRGEHALRRYP+GEERCIACKLCE Sbjct: 221 LLWTELFRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCE 280 Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 A+CPAQAITIE+ PR G+RRT RYDIDM KCIYCG C PNFEF+TET Sbjct: 281 AVCPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFC------------PNFEFSTET 327 Query: 131 RQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 +EL Y+KE+LLNNGD+WE+EI NI D YR Sbjct: 328 HEELLYNKEKLLNNGDKWEAEIAANIQADYLYR 360 >gi|254491908|ref|ZP_05105087.1| NADH-quinone oxidoreductase, chain I subfamily [Methylophaga thiooxidans DMS010] gi|224463386|gb|EEF79656.1| NADH-quinone oxidoreductase, chain I subfamily [Methylophaga thiooxydans DMS010] Length = 162 Score = 173 bits (439), Expect = 5e-42, Method: Composition-based stats. Identities = 88/163 (53%), Positives = 108/163 (66%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M R L E + L +Y F K T+ YP EK SPRFRG HALRRYPNGE Sbjct: 1 MNQLRHFFKSFLLWELLKGMKLTGKYLFARKVTVQYPEEKTPQSPRFRGLHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCI CKLCEA+CPA AITI++ PR GTRRT RYDID+ KCIYCG C+E+CPVD+IVE Sbjct: 61 ERCIGCKLCEAVCPALAITIDTEPRDD-GTRRTTRYDIDLFKCIYCGFCEESCPVDSIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 +FE+ E R + K++LL GD++E +I + D+PYR Sbjct: 120 TRHFEYHFEERGDHVITKDKLLAIGDKYEDQIAADRAEDAPYR 162 >gi|330935903|ref|XP_003305174.1| hypothetical protein PTT_17940 [Pyrenophora teres f. teres 0-1] gi|311317931|gb|EFQ86730.1| hypothetical protein PTT_17940 [Pyrenophora teres f. teres 0-1] Length = 230 Score = 173 bits (439), Expect = 6e-42, Method: Composition-based stats. Identities = 106/162 (65%), Positives = 119/162 (73%), Gaps = 1/162 (0%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 + L E ++ L FF+ TI YPFEKG SPRFRGEHALRRYP GEE Sbjct: 70 NALDQAGKYFLLMEMFRGMYVSLEQFFRPPYTIFYPFEKGPISPRFRGEHALRRYPTGEE 129 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLCEAICPAQAITIE+ R G+RRT RYDIDM KCIYCGLCQE+CPVDAIVEG Sbjct: 130 RCIACKLCEAICPAQAITIEAEERMD-GSRRTTRYDIDMTKCIYCGLCQESCPVDAIVEG 188 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 PN E+ATETR+EL Y+KE+LL NGD+WE EI D+PYR Sbjct: 189 PNAEYATETREELLYNKEKLLANGDKWEPEIAAAARADAPYR 230 >gi|189191492|ref|XP_001932085.1| NADH-quinone oxidoreductase subunit I [Pyrenophora tritici-repentis Pt-1C-BFP] gi|187973691|gb|EDU41190.1| NADH-quinone oxidoreductase subunit I [Pyrenophora tritici-repentis Pt-1C-BFP] Length = 230 Score = 173 bits (439), Expect = 6e-42, Method: Composition-based stats. Identities = 106/162 (65%), Positives = 119/162 (73%), Gaps = 1/162 (0%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 + L E ++ L FF+ TI YPFEKG SPRFRGEHALRRYP GEE Sbjct: 70 NALDQAGKYFLLMEMFRGMYVSLEQFFRPPYTIFYPFEKGPISPRFRGEHALRRYPTGEE 129 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLCEAICPAQAITIE+ R G+RRT RYDIDM KCIYCGLCQE+CPVDAIVEG Sbjct: 130 RCIACKLCEAICPAQAITIEAEERMD-GSRRTTRYDIDMTKCIYCGLCQESCPVDAIVEG 188 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 PN E+ATETR+EL Y+KE+LL NGD+WE EI D+PYR Sbjct: 189 PNAEYATETREELLYNKEKLLANGDKWEPEIAAAARADAPYR 230 >gi|114798298|ref|YP_760457.1| NADH dehydrogenase subunit I [Hyphomonas neptunium ATCC 15444] gi|123128794|sp|Q0C1D6|NUOI_HYPNA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|114738472|gb|ABI76597.1| NADH-quinone oxidoreductase, I subunit [Hyphomonas neptunium ATCC 15444] Length = 161 Score = 173 bits (439), Expect = 6e-42, Method: Composition-based stats. Identities = 113/158 (71%), Positives = 129/158 (81%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 + L +F+GA ++ +R F+ K T+NYPFEK SPRFRGEH LRRYP+GEERCIA Sbjct: 5 QTLRGALLTDFMGAAWIAVREMFRRKATVNYPFEKNPLSPRFRGEHVLRRYPSGEERCIA 64 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEAICPAQAITIE+ PR DG RRT RYDIDM+KCIYCG CQEACPVDAIVEGPNFE Sbjct: 65 CKLCEAICPAQAITIEAEPR-EDGARRTTRYDIDMVKCIYCGFCQEACPVDAIVEGPNFE 123 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FATETR+EL+YDKERLL NGDRWE I +N+ D+PYR Sbjct: 124 FATETREELFYDKERLLANGDRWERLIAKNLELDAPYR 161 >gi|304319939|ref|YP_003853582.1| NADH dehydrogenase I, I subunit [Parvularcula bermudensis HTCC2503] gi|303298842|gb|ADM08441.1| NADH dehydrogenase I, I subunit [Parvularcula bermudensis HTCC2503] Length = 162 Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats. Identities = 111/163 (68%), Positives = 130/163 (79%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + L +F AF+L ++YFF+ K T+NYPFE+G +SPRFRGEHALRRYPNGE Sbjct: 1 MSRVAQALKGATLSDFTSAFWLGMKYFFRPKATVNYPFERGPSSPRFRGEHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPAQAITIE+ R G+RRT RYDIDM+KCIYCGLCQE+CPVDAIVE Sbjct: 61 ERCIACKLCEAVCPAQAITIEAEERAD-GSRRTTRYDIDMVKCIYCGLCQESCPVDAIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GP + ATETR+EL YDK+RLL NGDRWE I +NI D+PYR Sbjct: 120 GPTLQIATETREELLYDKDRLLANGDRWERLIAKNIELDAPYR 162 >gi|226487082|emb|CAX75406.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8 [Schistosoma japonicum] gi|226487084|emb|CAX75407.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8 [Schistosoma japonicum] gi|226487086|emb|CAX75408.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8 [Schistosoma japonicum] gi|226487088|emb|CAX75409.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8 [Schistosoma japonicum] Length = 206 Score = 173 bits (439), Expect = 7e-42, Method: Composition-based stats. Identities = 104/155 (67%), Positives = 117/155 (75%), Gaps = 1/155 (0%) Query: 9 SFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKL 68 L + + L FK T+NYPFEK SPRFRGEHALRRYP+GEERCIACKL Sbjct: 53 RLLLAIDIIRGLRLTFAMIFKEPATLNYPFEKSPLSPRFRGEHALRRYPSGEERCIACKL 112 Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 CEAICPAQAITIE+ PR G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE++T Sbjct: 113 CEAICPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEYST 171 Query: 129 ETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 +T +EL Y+KE+LL NGDRWE EI N+ D YR Sbjct: 172 QTHEELLYNKEKLLQNGDRWEVEISENLKADYVYR 206 >gi|169599789|ref|XP_001793317.1| hypothetical protein SNOG_02720 [Phaeosphaeria nodorum SN15] gi|160705324|gb|EAT89451.2| hypothetical protein SNOG_02720 [Phaeosphaeria nodorum SN15] Length = 230 Score = 173 bits (438), Expect = 7e-42, Method: Composition-based stats. Identities = 104/160 (65%), Positives = 119/160 (74%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + L E ++ + FF+ TI YPFEKG SPRFRGEHALRRYP GEERC Sbjct: 72 LDRAGKYFLLMEMFRGMYVSMEQFFRPPYTIFYPFEKGPISPRFRGEHALRRYPTGEERC 131 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAITIE+ R G+RRT RYDIDM KCIYCGLCQE+CPVDAIVEGPN Sbjct: 132 IACKLCEAICPAQAITIEAEERMD-GSRRTTRYDIDMTKCIYCGLCQESCPVDAIVEGPN 190 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ATE+R+EL Y+KE+LL NGD+WE EI D+PYR Sbjct: 191 AEYATESREELLYNKEKLLANGDKWEPEIAAAARADAPYR 230 >gi|74317168|ref|YP_314908.1| NADH dehydrogenase subunit I [Thiobacillus denitrificans ATCC 25259] gi|115502546|sp|Q3SJP9|NUOI_THIDA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|74056663|gb|AAZ97103.1| NADH-quinone oxidoreductase chain I [Thiobacillus denitrificans ATCC 25259] Length = 162 Score = 173 bits (438), Expect = 9e-42, Method: Composition-based stats. Identities = 89/163 (54%), Positives = 109/163 (66%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 MR LFL E + L R+ F K T+ +P EK SPRFRG HALRRYPNGE Sbjct: 1 MRRITHFFGSLFLVELLRGMMLTGRHLFARKVTVQFPEEKTPQSPRFRGLHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITI+S R GTRRT RYDID+ KCI+CG C+E+CPVD+IVE Sbjct: 61 ERCIACKLCEAVCPALAITIDSEQRAD-GTRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +L Y K LL GD++E++I ++ D+ YR Sbjct: 120 TRILEYHGEQRGDLIYTKPMLLAIGDKYEAQIAQDRAQDAKYR 162 >gi|114777369|ref|ZP_01452366.1| NADH dehydrogenase subunit I [Mariprofundus ferrooxydans PV-1] gi|114552151|gb|EAU54653.1| NADH dehydrogenase subunit I [Mariprofundus ferrooxydans PV-1] Length = 160 Score = 172 bits (437), Expect = 9e-42, Method: Composition-based stats. Identities = 96/160 (60%), Positives = 108/160 (67%), Gaps = 1/160 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 + + + L E V L RY F+ K T+ YP EK SPRFRG HALRRY +GEER Sbjct: 1 MIKKALKTWLLWELVLGLALTGRYMFQKKITVEYPEEKTPLSPRFRGLHALRRYESGEER 60 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCE ICPA AI IES R G+RRT RYDID KCIYCGLCQEACPVDAIVE Sbjct: 61 CIACKLCEVICPAVAILIESAERDD-GSRRTTRYDIDFSKCIYCGLCQEACPVDAIVETQ 119 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPY 162 FE+ATETR LYY K+ LL GDR E +I N+ D+ Y Sbjct: 120 EFEYATETRDGLYYTKDMLLAVGDRNEKQIAANLAADARY 159 >gi|157964943|ref|YP_001499767.1| NADH dehydrogenase subunit I [Rickettsia massiliae MTU5] gi|157844719|gb|ABV85220.1| NADH dehydrogenase I chain I [Rickettsia massiliae MTU5] Length = 162 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 109/163 (66%), Positives = 118/163 (72%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + FL E V L L+YFFK K TINYP+EK SPRF+GEHALRRY NGE Sbjct: 1 MIFMINYLKSFFLYEIVRGMALTLKYFFKPKVTINYPYEKSPVSPRFKGEHALRRYENGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAI IE+ R DG+RRT RYDIDM KCIYCGLCQ ACPVDAIVE Sbjct: 61 ERCIACKLCEAICPAQAIVIEADER-EDGSRRTTRYDIDMTKCIYCGLCQAACPVDAIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFEFA+ T L YDKERLL NGDRWE + + D YR Sbjct: 120 GPNFEFASLTHTALIYDKERLLQNGDRWEQALASKLHKDYEYR 162 >gi|325983281|ref|YP_004295683.1| NADH-quinone oxidoreductase, chain I [Nitrosomonas sp. AL212] gi|325532800|gb|ADZ27521.1| NADH-quinone oxidoreductase, chain I [Nitrosomonas sp. AL212] Length = 162 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 91/163 (55%), Positives = 111/163 (68%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + + L E + + +Y FK K T++YP EK SPRFRG HALRRYPNGE Sbjct: 1 MDRIKKFFNTFLLFELLKGMAVTGKYLFKPKITVHYPEEKTPQSPRFRGLHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIES R GTRRT RYDID+ KCI+CG C+E+CPVD+IVE Sbjct: 61 ERCIACKLCEAVCPAMAITIESEQRAD-GTRRTTRYDIDLSKCIFCGFCEESCPVDSIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R++ Y KE LL GDR+E +I R+ D+PYR Sbjct: 120 TRILEYHCEKREDFIYTKEMLLAVGDRYEEQIARDREVDAPYR 162 >gi|56478184|ref|YP_159773.1| NADH dehydrogenase subunit I [Aromatoleum aromaticum EbN1] gi|81356980|sp|Q5P1E2|NUOI_AZOSE RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|56314227|emb|CAI08872.1| NADH dehydrogenase I , chain I [Aromatoleum aromaticum EbN1] Length = 161 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 90/159 (56%), Positives = 110/159 (69%), Gaps = 1/159 (0%) Query: 5 RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64 + + LFL E + L R+ F K T+ +P EK SPRFRG HALRRYPNGEERCI Sbjct: 4 KDYIGSLFLTELIKGLALTGRHLFARKITVQFPEEKTPASPRFRGLHALRRYPNGEERCI 63 Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 ACKLCEA+CPA AITIES R G+RRT RYDID+ KCI+CG C+EACPVDA+VE Sbjct: 64 ACKLCEAVCPALAITIESEQRDD-GSRRTKRYDIDLTKCIFCGFCEEACPVDAVVETRVM 122 Query: 125 EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +LYY K+ LL GDR+E++I + D+ YR Sbjct: 123 EYHGEKRGDLYYTKQMLLAVGDRYEAQIAADREADAKYR 161 >gi|260948246|ref|XP_002618420.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720] gi|238848292|gb|EEQ37756.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720] Length = 219 Score = 172 bits (437), Expect = 1e-41, Method: Composition-based stats. Identities = 103/160 (64%), Positives = 122/160 (76%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 F FL E ++C+ +F++ TI YPFEKG SPRFRGEHALRRYP+GEERC Sbjct: 61 LSKATKFFFLNEIARGMYICMEMYFRSPYTIYYPFEKGPISPRFRGEHALRRYPSGEERC 120 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAITIE+ R G+RRT +YDIDM KCIYCG CQE+CPVDAIVE PN Sbjct: 121 IACKLCEAICPAQAITIEAEERID-GSRRTYKYDIDMTKCIYCGYCQESCPVDAIVESPN 179 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E++TETR+EL Y+KE+LL NGD+WE E+ I D+PYR Sbjct: 180 VEYSTETREELLYNKEKLLENGDKWEQELQYCIDADAPYR 219 >gi|11466585|ref|NP_066475.1| NADH dehydrogenase subunit 8 [Rhodomonas salina] gi|10444172|gb|AAG17746.1|AF288090_22 NADH dehydrogenase subunit 8 [Rhodomonas salina] Length = 162 Score = 172 bits (436), Expect = 1e-41, Method: Composition-based stats. Identities = 105/163 (64%), Positives = 126/163 (77%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M F NV LFL E ++ L+YFF+ K T+NYPFEK SPRFRGEHALRRY +GE Sbjct: 1 MSYFNFNVRILFLSELFRGLWMVLQYFFRRKVTLNYPFEKAVLSPRFRGEHALRRYFSGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPAQAITIE+ R + +R+T RYDIDM KCI+CGLCQEACPVDAIVE Sbjct: 61 ERCIACKLCEAVCPAQAITIETESRADN-SRKTSRYDIDMTKCIFCGLCQEACPVDAIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPN+E++ RQ L Y+KE+LL NGD+WE EI N +++S YR Sbjct: 120 GPNYEYSVFKRQNLIYNKEKLLKNGDQWELEIRENRLSESMYR 162 >gi|321256389|ref|XP_003193382.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial precursor [Cryptococcus gattii WM276] gi|317459852|gb|ADV21595.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial precursor, putative [Cryptococcus gattii WM276] Length = 280 Score = 172 bits (436), Expect = 1e-41, Method: Composition-based stats. Identities = 100/164 (60%), Positives = 113/164 (68%), Gaps = 7/164 (4%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 LFL E V ++ FF+ TI YPFEKG S RFRGEHALRRYPNGEERC Sbjct: 77 IDKASQLLFLTEIVRGMWVVFEQFFRPPYTIMYPFEKGPLSARFRGEHALRRYPNGEERC 136 Query: 64 IACKLCEAICPAQAITIESGPRCH-------DGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 IACKLCEAICPAQAITIES R G T++ DIDM KCIYCG CQEACPVD Sbjct: 137 IACKLCEAICPAQAITIESEAREDGSRRTTRYGCMLTLQKDIDMTKCIYCGFCQEACPVD 196 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDS 160 AIVE N EF+TETR+EL Y+KE+LL NGDR E+EI N+ ++ Sbjct: 197 AIVETQNQEFSTETREELLYNKEKLLLNGDRAEAEIAANLQSEH 240 >gi|207723881|ref|YP_002254279.1| nadh dehydrogenaseI(chainI protein [Ralstonia solanacearum MolK2] gi|206589086|emb|CAQ36048.1| nadh dehydrogenaseI(chainI protein [Ralstonia solanacearum MolK2] Length = 163 Score = 172 bits (436), Expect = 1e-41, Method: Composition-based stats. Identities = 95/160 (59%), Positives = 108/160 (67%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + + L LKE L RY F K T+ +P EK SPRFRG HALRRYPNGEERC Sbjct: 5 IKEFFNSLLLKELFKGLALTGRYLFARKITVLFPEEKTPLSPRFRGLHALRRYPNGEERC 64 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEA+CPA AITIES R GTRRT RYDID+ KCI+CG C+EACPVDAIVE Sbjct: 65 IACKLCEAVCPALAITIESDQRDD-GTRRTTRYDIDLTKCIFCGFCEEACPVDAIVETHI 123 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +LY+ KE LL GDR+E EI N D+ YR Sbjct: 124 LEYHGEKRGDLYFTKEMLLAVGDRFEPEIAANKAADAKYR 163 >gi|17546773|ref|NP_520175.1| NADH dehydrogenase subunit I [Ralstonia solanacearum GMI1000] gi|83746305|ref|ZP_00943358.1| NADH-quinone oxidoreductase chain I [Ralstonia solanacearum UW551] gi|187929285|ref|YP_001899772.1| NADH dehydrogenase subunit I [Ralstonia pickettii 12J] gi|207742743|ref|YP_002259135.1| nadh dehydrogenaseI(chainI protein [Ralstonia solanacearum IPO1609] gi|241663476|ref|YP_002981836.1| NADH dehydrogenase subunit I [Ralstonia pickettii 12D] gi|309781860|ref|ZP_07676593.1| NADH dehydrogenase (ubiquinone), I subunit [Ralstonia sp. 5_7_47FAA] gi|81504319|sp|Q8XXQ9|NUOI_RALSO RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|17429073|emb|CAD15761.1| probable nadh dehydrogenaseI(chainI oxidoreductase protein [Ralstonia solanacearum GMI1000] gi|83727055|gb|EAP74180.1| NADH-quinone oxidoreductase chain I [Ralstonia solanacearum UW551] gi|187726175|gb|ACD27340.1| NADH-quinone oxidoreductase, chain I [Ralstonia pickettii 12J] gi|206594137|emb|CAQ61064.1| nadh dehydrogenaseI(chainI protein [Ralstonia solanacearum IPO1609] gi|240865503|gb|ACS63164.1| NADH-quinone oxidoreductase, chain I [Ralstonia pickettii 12D] gi|299066341|emb|CBJ37525.1| NADH-quinone oxidoreductase subunit I [Ralstonia solanacearum CMR15] gi|308919501|gb|EFP65165.1| NADH dehydrogenase (ubiquinone), I subunit [Ralstonia sp. 5_7_47FAA] Length = 163 Score = 172 bits (436), Expect = 1e-41, Method: Composition-based stats. Identities = 94/160 (58%), Positives = 108/160 (67%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + + L LKE L RY F K T+ +P EK SPRFRG HALRRYPNGEERC Sbjct: 5 IKEFFNSLLLKELFKGLALTGRYLFARKITVLFPEEKTPLSPRFRGLHALRRYPNGEERC 64 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEA+CPA AITIES R GTRRT RYDID+ KCI+CG C+EACPVDAIVE Sbjct: 65 IACKLCEAVCPALAITIESDQRDD-GTRRTTRYDIDLTKCIFCGFCEEACPVDAIVETHI 123 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +LY+ K+ LL GDR+E EI N D+ YR Sbjct: 124 LEYHGEKRGDLYFTKDMLLAVGDRFEPEIAANKAADAKYR 163 >gi|256821523|ref|YP_003145486.1| NADH dehydrogenase subunit I [Kangiella koreensis DSM 16069] gi|256795062|gb|ACV25718.1| NADH-quinone oxidoreductase, chain I [Kangiella koreensis DSM 16069] Length = 163 Score = 172 bits (436), Expect = 1e-41, Method: Composition-based stats. Identities = 90/163 (55%), Positives = 109/163 (66%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M R L E L + +K K T+ YP E+ SPRFRG HALRRYPNGE Sbjct: 1 MSRIRQIFRSYLLTELFRGLRLTWAHMWKRKVTVQYPEEQTPQSPRFRGIHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIE+GPR DGTRRT RY+IDM KCIYCG C+E+CPVD+IVE Sbjct: 61 ERCIACKLCEAVCPAAAITIEAGPRESDGTRRTTRYEIDMFKCIYCGFCEESCPVDSIVE 120 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 F++ E R + KE+LL GDR+E++I + D+ YR Sbjct: 121 TRVFDYHFEKRGDNILTKEQLLAIGDRYEAQIAEDRAKDAKYR 163 >gi|67459652|ref|YP_247276.1| NADH dehydrogenase subunit I [Rickettsia felis URRWXCal2] gi|75535952|sp|Q4UK24|NUOI_RICFE RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|67005185|gb|AAY62111.1| NADH dehydrogenase I chain I [Rickettsia felis URRWXCal2] Length = 159 Score = 172 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 108/160 (67%), Positives = 117/160 (73%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + FL E V L L+YFFK K TINYP+EK SPRF+GEHALRRY NGEERC Sbjct: 1 MINYLKSFFLYEIVRGMALTLKYFFKPKVTINYPYEKSPVSPRFKGEHALRRYENGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAI IE+ R G+RRT RYDIDM KCIYCGLCQEACPVDAIVEGPN Sbjct: 61 IACKLCEAICPAQAIVIEADERDD-GSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGPN 119 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FEFA+ T L YDKERLL NGDRWE + + D YR Sbjct: 120 FEFASLTHTALIYDKERLLQNGDRWEQALASKLHKDYEYR 159 >gi|217970164|ref|YP_002355398.1| NADH dehydrogenase subunit I [Thauera sp. MZ1T] gi|217507491|gb|ACK54502.1| NADH-quinone oxidoreductase, chain I [Thauera sp. MZ1T] Length = 161 Score = 172 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 96/159 (60%), Positives = 111/159 (69%), Gaps = 1/159 (0%) Query: 5 RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64 + + LFLKE V L R+FF+ K TI +P EK S RFRG HALRRYPNGEERCI Sbjct: 4 KDYIGSLFLKELVKGMALTGRHFFQRKITILFPEEKTPQSNRFRGLHALRRYPNGEERCI 63 Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 ACKLCEAICPA AITIES R G+RRT RYDID+ KCI+CG C+EACPVDAIVE Sbjct: 64 ACKLCEAICPAMAITIESDQRDD-GSRRTTRYDIDLTKCIFCGFCEEACPVDAIVETRVL 122 Query: 125 EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +LYY K+ LL GDR ES+I + D+ YR Sbjct: 123 EYHGEQRGDLYYTKQMLLAVGDRHESQIAADRQQDAKYR 161 >gi|149246748|ref|XP_001527799.1| NADH-quinone oxidoreductase chain I [Lodderomyces elongisporus NRRL YB-4239] gi|146447753|gb|EDK42141.1| NADH-quinone oxidoreductase chain I [Lodderomyces elongisporus NRRL YB-4239] Length = 246 Score = 172 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 101/155 (65%), Positives = 121/155 (78%), Gaps = 1/155 (0%) Query: 9 SFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKL 68 + FL E ++CL +F++ TI YPFEKG SPRFRGEHALRRYP+GEERCIACKL Sbjct: 93 KYFFLSEIFRGMYICLEMYFRSPYTIYYPFEKGPISPRFRGEHALRRYPSGEERCIACKL 152 Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 CEAICPAQAITIE+ R G+RRT +YDIDM KCIYCG CQE+CPVDAIVE PN E++T Sbjct: 153 CEAICPAQAITIEAEERAD-GSRRTYKYDIDMTKCIYCGYCQESCPVDAIVESPNVEYST 211 Query: 129 ETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 TR+EL Y+KE+LL+NGD+WE E+ I D+ YR Sbjct: 212 ATREELLYNKEKLLDNGDKWEQELQYCIDADAAYR 246 >gi|126133937|ref|XP_001383493.1| mitochondrial complex I NUIM TYKY subunit (proton translocation) [Scheffersomyces stipitis CBS 6054] gi|126095642|gb|ABN65464.1| mitochondrial complex I NUIM TYKY subunit (proton translocation) [Scheffersomyces stipitis CBS 6054] Length = 226 Score = 172 bits (435), Expect = 2e-41, Method: Composition-based stats. Identities = 102/160 (63%), Positives = 121/160 (75%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 F FL E ++C+ +F++ TI YPFEKG SPRFRGEHALRRYP+GEERC Sbjct: 68 LSKATKFFFLSEIARGMYICMEMYFRSPYTIYYPFEKGPISPRFRGEHALRRYPSGEERC 127 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAITIE+ R G+RRT +YDIDM KCIYCG CQE+CPVDAIVE PN Sbjct: 128 IACKLCEAICPAQAITIEAEERID-GSRRTYKYDIDMTKCIYCGYCQESCPVDAIVESPN 186 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E++T TR+EL Y+KE+LL NGD+WE E+ I D+PYR Sbjct: 187 VEYSTATREELLYNKEKLLENGDKWEQELQYCIDADAPYR 226 >gi|300691033|ref|YP_003752028.1| NADH-quinone oxidoreductase subunit I [Ralstonia solanacearum PSI07] gi|299078093|emb|CBJ50736.1| NADH-quinone oxidoreductase subunit I [Ralstonia solanacearum PSI07] Length = 163 Score = 171 bits (434), Expect = 2e-41, Method: Composition-based stats. Identities = 95/160 (59%), Positives = 108/160 (67%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + + L LKE L RY F K T+ +P EK SPRFRG HALRRYPNGEERC Sbjct: 5 IKEFFNSLLLKELFKGLALTGRYLFARKITVLFPEEKTPLSPRFRGLHALRRYPNGEERC 64 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEA+CPA AITIES R GTRRT RYDID+ KCI+CG C+EACPVDAIVE Sbjct: 65 IACKLCEAVCPALAITIESDLRDD-GTRRTTRYDIDLTKCIFCGFCEEACPVDAIVETHI 123 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +LY+ KE LL GDR+E EI N D+ YR Sbjct: 124 LEYHGEKRGDLYFTKEMLLAVGDRFEPEIAANKAADAKYR 163 >gi|33592015|ref|NP_879659.1| NADH dehydrogenase subunit I [Bordetella pertussis Tohama I] gi|33602808|ref|NP_890368.1| NADH dehydrogenase subunit I [Bordetella bronchiseptica RB50] gi|81425357|sp|Q7VZP7|NUOI_BORPE RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|81429893|sp|Q7WCU7|NUOI_BORBR RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|158958056|sp|Q7W5B5|NUOI_BORPA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|33571659|emb|CAE41152.1| NADH-ubiquinone oxidoreductase, chain I [Bordetella pertussis Tohama I] gi|33577250|emb|CAE35807.1| NADH-ubiquinone oxidoreductase, chain I [Bordetella bronchiseptica RB50] gi|332381431|gb|AEE66278.1| NADH dehydrogenase subunit I [Bordetella pertussis CS] Length = 162 Score = 171 bits (434), Expect = 2e-41, Method: Composition-based stats. Identities = 95/163 (58%), Positives = 111/163 (68%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + L L E L +YFFK K T+ YP EK TS RFRG HALRRYPNGE Sbjct: 1 MEAIKDFFGSLLLTELFKGLRLTGKYFFKRKVTLRYPMEKTPTSARFRGLHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIES R GTRRT RYDID+ KCI+CG C+E+CPVD+IVE Sbjct: 61 ERCIACKLCEAVCPALAITIESEQRDD-GTRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +LY+ K+ LL GDR+E+EI R D+PYR Sbjct: 120 THIHEYHGEKRGDLYFTKDMLLAVGDRYEAEIARRRAEDAPYR 162 >gi|238650815|ref|YP_002916670.1| NADH dehydrogenase subunit I [Rickettsia peacockii str. Rustic] gi|259514787|sp|C4K221|NUOI_RICPU RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|238624913|gb|ACR47619.1| NADH dehydrogenase subunit I [Rickettsia peacockii str. Rustic] Length = 159 Score = 171 bits (434), Expect = 2e-41, Method: Composition-based stats. Identities = 109/160 (68%), Positives = 118/160 (73%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + FL E V L L+YFFK K TINYP+EK SPRF+GEHALRRY NGEERC Sbjct: 1 MINYLKSFFLYEIVRGMALTLKYFFKPKVTINYPYEKSPISPRFKGEHALRRYENGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAI IE+ R DG+RRT RYDIDM KCIYCGLCQEACPVDAIVEGPN Sbjct: 61 IACKLCEAICPAQAIVIEADER-EDGSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGPN 119 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FEFA+ T L YDKERLL NGDRWE + + D YR Sbjct: 120 FEFASLTHTALIYDKERLLQNGDRWEQALASKLHKDYEYR 159 >gi|15604627|ref|NP_221145.1| NADH dehydrogenase subunit I [Rickettsia prowazekii str. Madrid E] gi|6647675|sp|Q9ZCF8|NUOI_RICPR RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|3861322|emb|CAA15221.1| NADH DEHYDROGENASE I CHAIN I (nuoI) [Rickettsia prowazekii] gi|292572444|gb|ADE30359.1| NADH dehydrogenase I chain I [Rickettsia prowazekii Rp22] Length = 159 Score = 171 bits (434), Expect = 2e-41, Method: Composition-based stats. Identities = 108/160 (67%), Positives = 118/160 (73%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + FL E + L L+YFFK K TINYP+EK SPRF+GEHALRRY NGEERC Sbjct: 1 MINYLKSFFLYEIIRGMTLTLKYFFKPKVTINYPYEKSPVSPRFKGEHALRRYENGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAI IES R G+RRT RYDIDM KCIYCGLCQEACPVDAIVEGPN Sbjct: 61 IACKLCEAICPAQAIVIESDERDD-GSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGPN 119 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FEFA+ T L YDKERLLNNGD+WE + + D YR Sbjct: 120 FEFASLTHTALIYDKERLLNNGDKWEQALANKLHKDYQYR 159 >gi|30249729|ref|NP_841799.1| NADH dehydrogenase subunit I [Nitrosomonas europaea ATCC 19718] gi|75540328|sp|Q82TV1|NUOI_NITEU RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|30180766|emb|CAD85680.1| nuoI; NADH dehydrogenase I (chain I) oxidoreductase protein [Nitrosomonas europaea ATCC 19718] Length = 162 Score = 171 bits (434), Expect = 2e-41, Method: Composition-based stats. Identities = 95/163 (58%), Positives = 109/163 (66%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + L E + + RY F K T++YP EK SPRFRG HALRRYPNGE Sbjct: 1 MERIKQFFKSFLLVEMLKGMKVTGRYLFAPKITVHYPEEKTPQSPRFRGLHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIES R TRRT RYDIDMIKCI+CG C+EACPVDAIVE Sbjct: 61 ERCIACKLCEAVCPAMAITIESEQRDDS-TRRTTRYDIDMIKCIFCGFCEEACPVDAIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +L Y KE LL GDR+E +I R+ D+PYR Sbjct: 120 TRVLEYHGEVRGDLTYTKEMLLAVGDRYEEQIARDRAADAPYR 162 >gi|300703650|ref|YP_003745252.1| NADH-quinone oxidoreductase subunit i [Ralstonia solanacearum CFBP2957] gi|299071313|emb|CBJ42631.1| NADH-quinone oxidoreductase subunit I [Ralstonia solanacearum CFBP2957] Length = 163 Score = 171 bits (434), Expect = 2e-41, Method: Composition-based stats. Identities = 94/160 (58%), Positives = 108/160 (67%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + + L LKE L RY F K T+ +P EK SPRFRG HALRRYPNGEERC Sbjct: 5 IKEFFNSLLLKELFKGLALTGRYLFARKITVFFPEEKTPLSPRFRGLHALRRYPNGEERC 64 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEA+CPA AITIES R GTRRT RYDID+ KCI+CG C+EACPVDAIVE Sbjct: 65 IACKLCEAVCPALAITIESDQRDD-GTRRTTRYDIDLTKCIFCGFCEEACPVDAIVETHI 123 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +LY+ K+ LL GDR+E EI N D+ YR Sbjct: 124 LEYHGEKRGDLYFTKDMLLAVGDRFEPEIAANKAADAKYR 163 >gi|325184975|emb|CCA19467.1| NADH dehydrogenase putative [Albugo laibachii Nc14] Length = 202 Score = 171 bits (434), Expect = 3e-41, Method: Composition-based stats. Identities = 107/161 (66%), Positives = 122/161 (75%), Gaps = 1/161 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 IF + FL + A +L + K T+NYPFEK SPRFRGEHALRRYP+GEER Sbjct: 43 IFDKLANTFFLGDVARATWLAWEVHLEKKVTVNYPFEKNYLSPRFRGEHALRRYPSGEER 102 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEAICPAQAITIE+ R G+RRT RYDIDM KCIYCG CQEACPVDAIVEGP Sbjct: 103 CIACKLCEAICPAQAITIEAEARAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 161 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 NFEFATET +EL YDK +LL NGD+WE EI +N+ ++ YR Sbjct: 162 NFEFATETHEELLYDKAKLLANGDKWEFEIAQNLASEQLYR 202 >gi|229587157|ref|YP_002845658.1| NADH dehydrogenase subunit I [Rickettsia africae ESF-5] gi|259514784|sp|C3PLS5|NUOI_RICAE RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|228022207|gb|ACP53915.1| NADH dehydrogenase I chain I [Rickettsia africae ESF-5] Length = 159 Score = 171 bits (433), Expect = 3e-41, Method: Composition-based stats. Identities = 109/160 (68%), Positives = 118/160 (73%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + FL E V L L+YFFK K TINYP+EK SPRF+GEHALRRY NGEERC Sbjct: 1 MIHYLKSFFLYEIVRGMALTLKYFFKPKVTINYPYEKSPISPRFKGEHALRRYENGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAI IE+ R DG+RRT RYDIDM KCIYCGLCQEACPVDAIVEGPN Sbjct: 61 IACKLCEAICPAQAIVIEADER-EDGSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGPN 119 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FEFA+ T L YDKERLL NGDRWE + + D YR Sbjct: 120 FEFASLTHTALIYDKERLLQNGDRWEQALASKLRKDYEYR 159 >gi|212218221|ref|YP_002305008.1| NADH dehydrogenase subunit I [Coxiella burnetii CbuK_Q154] gi|212012483|gb|ACJ19863.1| NADH-quinone oxidoreductase chain I [Coxiella burnetii CbuK_Q154] Length = 168 Score = 171 bits (433), Expect = 3e-41, Method: Composition-based stats. Identities = 91/163 (55%), Positives = 109/163 (66%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 MR + + L E + L LRYF++ K TI+YP E+ +S RFRG ALRRYPNGE Sbjct: 6 MRRLKQIIKSFTLWELLKGLSLTLRYFYRKKVTIHYPDEEVPSSFRFRGMLALRRYPNGE 65 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA CPA AITIE+GPR DG+RRT YDID KCI CG C+EACPVDAIV Sbjct: 66 ERCIACKLCEAFCPACAITIEAGPREADGSRRTTLYDIDAFKCINCGFCEEACPVDAIVL 125 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 P ++ + R E KE+LL GDR+E +I R+ D YR Sbjct: 126 TPEMHYSIKDRGENILTKEKLLMIGDRYEEQIARDRAKDKKYR 168 >gi|253996965|ref|YP_003049029.1| NADH dehydrogenase subunit I [Methylotenera mobilis JLW8] gi|253983644|gb|ACT48502.1| NADH-quinone oxidoreductase, chain I [Methylotenera mobilis JLW8] Length = 164 Score = 171 bits (433), Expect = 3e-41, Method: Composition-based stats. Identities = 88/162 (54%), Positives = 107/162 (66%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 + + + L L E + L RYFF K T+ YP E S RFRG HALRRYPNGEE Sbjct: 3 KSIKQTLGSLMLWELLKGMALTGRYFFAPKITVQYPEENTPQSNRFRGLHALRRYPNGEE 62 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLCEA+CPA AITIES R D TRRT RYDID+ KCI+CG+C+E+CPVD+IVE Sbjct: 63 RCIACKLCEAVCPAMAITIESEQREDDKTRRTTRYDIDLTKCIFCGMCEESCPVDSIVET 122 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 F++ E R +L Y KE LL GD+ E +I + D +R Sbjct: 123 RVFDYHGEQRGDLIYTKEMLLAVGDKHEKQIAADRAQDKSFR 164 >gi|91204918|ref|YP_537273.1| NADH dehydrogenase subunit I [Rickettsia bellii RML369-C] gi|157827755|ref|YP_001496819.1| NADH dehydrogenase subunit I [Rickettsia bellii OSU 85-389] gi|110287771|sp|Q1RKD0|NUOI_RICBR RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|226737412|sp|A8GY32|NUOI_RICB8 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|91068462|gb|ABE04184.1| NADH dehydrogenase I chain I [Rickettsia bellii RML369-C] gi|157803059|gb|ABV79782.1| NADH dehydrogenase subunit I [Rickettsia bellii OSU 85-389] Length = 159 Score = 171 bits (433), Expect = 3e-41, Method: Composition-based stats. Identities = 108/160 (67%), Positives = 119/160 (74%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + FL E + L L+YFFKAK TINYP+EK SPRF+GEHALRRY NGEERC Sbjct: 1 MINYLKSFFLYEIIRGLALTLKYFFKAKVTINYPYEKSPVSPRFKGEHALRRYENGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAI IE+ R DG+RRT RYDIDM KCIYCGLCQEACPVDAIVEGPN Sbjct: 61 IACKLCEAICPAQAIVIEADER-EDGSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGPN 119 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FEFA+ T L YDKE+LL NGDRWE + + D YR Sbjct: 120 FEFASLTHTALIYDKEKLLQNGDRWEQALANKLHKDYEYR 159 >gi|190358907|sp|A8F2T4|NUOI_RICM5 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I Length = 159 Score = 171 bits (433), Expect = 3e-41, Method: Composition-based stats. Identities = 108/160 (67%), Positives = 117/160 (73%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + FL E V L L+YFFK K TINYP+EK SPRF+GEHALRRY NGEERC Sbjct: 1 MINYLKSFFLYEIVRGMALTLKYFFKPKVTINYPYEKSPVSPRFKGEHALRRYENGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAI IE+ R DG+RRT RYDIDM KCIYCGLCQ ACPVDAIVEGPN Sbjct: 61 IACKLCEAICPAQAIVIEADER-EDGSRRTTRYDIDMTKCIYCGLCQAACPVDAIVEGPN 119 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FEFA+ T L YDKERLL NGDRWE + + D YR Sbjct: 120 FEFASLTHTALIYDKERLLQNGDRWEQALASKLHKDYEYR 159 >gi|322780735|gb|EFZ09992.1| hypothetical protein SINV_04706 [Solenopsis invicta] Length = 286 Score = 171 bits (432), Expect = 3e-41, Method: Composition-based stats. Identities = 109/160 (68%), Positives = 124/160 (77%), Gaps = 1/160 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 I + +F+ E + F + L F+ TINYPFEKG SPRFRGEHALRRYP+GEER Sbjct: 49 IMEAATTHMFVLELIRGFGIVLSQVFREPATINYPFEKGPLSPRFRGEHALRRYPSGEER 108 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEAICPAQAITIE+ R G+RRT RYDIDM KCIYCG CQEACPVDAIVEGP Sbjct: 109 CIACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMSKCIYCGFCQEACPVDAIVEGP 167 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPY 162 NFEF+TET +E+ Y+KE+LLNNGD+WESEI NI D Y Sbjct: 168 NFEFSTETHEEMLYNKEKLLNNGDKWESEIASNIHADHLY 207 >gi|312222247|emb|CBY02187.1| hypothetical protein [Leptosphaeria maculans] Length = 230 Score = 171 bits (432), Expect = 4e-41, Method: Composition-based stats. Identities = 103/160 (64%), Positives = 119/160 (74%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + L E ++ L +F+ TI YPFEKG SPRFRGEHALRRYP GEERC Sbjct: 72 LDRAGKYFLLLEMFRGMYVSLEQYFRPPYTIFYPFEKGPVSPRFRGEHALRRYPTGEERC 131 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAITIE+ R G+RRT RYDIDM KCIYCGLCQE+CPVDAIVEGPN Sbjct: 132 IACKLCEAICPAQAITIEAEERMD-GSRRTTRYDIDMTKCIYCGLCQESCPVDAIVEGPN 190 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+AT TR+EL Y+KE+LL+NGD+WE E+ D+PYR Sbjct: 191 TEYATTTREELLYNKEKLLSNGDKWEPELAAAARADAPYR 230 >gi|311104666|ref|YP_003977519.1| NADH-quinone oxidoreductase subunit 9 [Achromobacter xylosoxidans A8] gi|310759355|gb|ADP14804.1| NADH-quinone oxidoreductase subunit 9 [Achromobacter xylosoxidans A8] Length = 162 Score = 171 bits (432), Expect = 4e-41, Method: Composition-based stats. Identities = 94/163 (57%), Positives = 112/163 (68%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + L L E + L +YFFK K T+ YP EK SPRFRG HALRRYPNGE Sbjct: 1 MEAIKDFFGSLMLTELLKGMRLTGKYFFKRKVTLRYPQEKTPASPRFRGLHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIES R GTRRT RYDID+ KCI+CG C+E+CPVD+IVE Sbjct: 61 ERCIACKLCEAVCPALAITIESDQRDD-GTRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +LY+ K+ LL GDR+E++I R D+PYR Sbjct: 120 THIHEYHGEKRGDLYFTKDMLLAVGDRYEADIARRRAEDAPYR 162 >gi|209363825|ref|YP_001423965.2| NADH dehydrogenase subunit I [Coxiella burnetii Dugway 5J108-111] gi|215919184|ref|NP_820423.2| NADH dehydrogenase subunit I [Coxiella burnetii RSA 493] gi|206584068|gb|AAO90937.2| NADH-quinone oxidoreductase chain I [Coxiella burnetii RSA 493] gi|207081758|gb|ABS78476.2| NADH-quinone oxidoreductase chain I [Coxiella burnetii Dugway 5J108-111] Length = 168 Score = 171 bits (432), Expect = 4e-41, Method: Composition-based stats. Identities = 91/163 (55%), Positives = 110/163 (67%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 MR + + L E + L LRYF++ K TI+YP E+ +S RFRG ALRRYPNGE Sbjct: 6 MRRLKQIIKSFTLWELLKGLSLTLRYFYRKKVTIHYPDEEVPSSFRFRGMLALRRYPNGE 65 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIE+GPR DG+RRT YDID KCI CG C+EACPVDAIV Sbjct: 66 ERCIACKLCEAVCPACAITIEAGPREADGSRRTTLYDIDAFKCINCGFCEEACPVDAIVL 125 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 P ++ + R E KE+LL GDR+E +I R+ D YR Sbjct: 126 TPEMHYSIKDRGENILTKEKLLMIGDRYEEQIARDRAKDKKYR 168 >gi|15893152|ref|NP_360866.1| NADH dehydrogenase subunit I [Rickettsia conorii str. Malish 7] gi|20139030|sp|Q92G94|NUOI_RICCN RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|15620362|gb|AAL03767.1| NADH dehydrogenase I chain I [Rickettsia conorii str. Malish 7] Length = 159 Score = 171 bits (432), Expect = 4e-41, Method: Composition-based stats. Identities = 109/160 (68%), Positives = 118/160 (73%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + FL E V L L+YFFK K TINYP+EK SPRF+GEHALRRY NGEERC Sbjct: 1 MINYLKSFFLYEIVRGMVLTLKYFFKPKVTINYPYEKSPISPRFKGEHALRRYENGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAI IE+ R DG+RRT RYDIDM KCIYCGLCQEACPVDAIVEGPN Sbjct: 61 IACKLCEAICPAQAIVIEADER-EDGSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGPN 119 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FEFA+ T L YDKERLL NGDRWE + + D YR Sbjct: 120 FEFASLTHTALIYDKERLLQNGDRWEQALASKLHKDYEYR 159 >gi|239946812|ref|ZP_04698565.1| NADH-quinone oxidoreductase subunit I [Rickettsia endosymbiont of Ixodes scapularis] gi|239921088|gb|EER21112.1| NADH-quinone oxidoreductase subunit I [Rickettsia endosymbiont of Ixodes scapularis] Length = 159 Score = 171 bits (432), Expect = 4e-41, Method: Composition-based stats. Identities = 106/160 (66%), Positives = 116/160 (72%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + FL E V L L+YFFK K TINYP+EK SPRF+GEHALRRY NGEERC Sbjct: 1 MINYLKSFFLYEIVRGMALTLKYFFKPKVTINYPYEKSPVSPRFKGEHALRRYENGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAI IE+ R G+RRT RYDIDM KCIYCGLCQEACPVDAIVEGPN Sbjct: 61 IACKLCEAICPAQAIVIEADERDD-GSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGPN 119 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FEF + T L YDKERLL NGD+WE + + D YR Sbjct: 120 FEFTSLTHTALIYDKERLLQNGDKWEQALASKLHKDYEYR 159 >gi|317401996|gb|EFV82596.1| NADH-quinone oxidoreductase subunit I [Achromobacter xylosoxidans C54] Length = 162 Score = 170 bits (431), Expect = 5e-41, Method: Composition-based stats. Identities = 95/163 (58%), Positives = 112/163 (68%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + L L E + L +YFFK K T+ YP EK TS RFRG HALRRYPNGE Sbjct: 1 MEAIKDFFGSLMLAELLKGMRLTGKYFFKRKVTLRYPQEKTPTSARFRGLHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIES R GTRRT RYDID+ KCI+CG C+E+CPVD+IVE Sbjct: 61 ERCIACKLCEAVCPALAITIESDQRDD-GTRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +LY+ K+ LL GDR+E+EI R D+PYR Sbjct: 120 THIHEYHGEKRGDLYFTKDMLLAVGDRYEAEIARRRAEDAPYR 162 >gi|153207231|ref|ZP_01945995.1| NADH dehydrogenase (ubiquinone), I subunit [Coxiella burnetii 'MSU Goat Q177'] gi|165918772|ref|ZP_02218858.1| NADH dehydrogenase (ubiquinone), I subunit [Coxiella burnetii RSA 334] gi|120576719|gb|EAX33343.1| NADH dehydrogenase (ubiquinone), I subunit [Coxiella burnetii 'MSU Goat Q177'] gi|165917496|gb|EDR36100.1| NADH dehydrogenase (ubiquinone), I subunit [Coxiella burnetii RSA 334] Length = 163 Score = 170 bits (431), Expect = 5e-41, Method: Composition-based stats. Identities = 91/163 (55%), Positives = 109/163 (66%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 MR + + L E + L LRYF++ K TI+YP E+ +S RFRG ALRRYPNGE Sbjct: 1 MRRLKQIIKSFTLWELLKGLSLTLRYFYRKKVTIHYPDEEVPSSFRFRGMLALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA CPA AITIE+GPR DG+RRT YDID KCI CG C+EACPVDAIV Sbjct: 61 ERCIACKLCEAFCPACAITIEAGPREADGSRRTTLYDIDAFKCINCGFCEEACPVDAIVL 120 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 P ++ + R E KE+LL GDR+E +I R+ D YR Sbjct: 121 TPEMHYSIKDRGENILTKEKLLMIGDRYEEQIARDRAKDKKYR 163 >gi|157826248|ref|YP_001493968.1| NADH dehydrogenase subunit I [Rickettsia akari str. Hartford] gi|226737411|sp|A8GPY5|NUOI_RICAH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|157800206|gb|ABV75460.1| NADH dehydrogenase subunit I [Rickettsia akari str. Hartford] Length = 159 Score = 170 bits (431), Expect = 5e-41, Method: Composition-based stats. Identities = 107/160 (66%), Positives = 118/160 (73%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + FL E + L L+YFFK K TINYP+EK SPRF+GEHALRRY +GEERC Sbjct: 1 MINYLKSFFLYEIIRGMSLTLKYFFKPKVTINYPYEKSHVSPRFKGEHALRRYESGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAI IE+ R DG+RRT RYDIDM KCIYCGLCQEACPVDAIVEGPN Sbjct: 61 IACKLCEAICPAQAIVIEADER-EDGSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGPN 119 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FEFA+ T L YDKERLL NGDRWE + + D YR Sbjct: 120 FEFASLTHAALIYDKERLLQNGDRWEQALASKLHKDYEYR 159 >gi|226939464|ref|YP_002794537.1| NADH dehydrogenase subunit I [Laribacter hongkongensis HLHK9] gi|226714390|gb|ACO73528.1| NuoI [Laribacter hongkongensis HLHK9] Length = 160 Score = 170 bits (431), Expect = 5e-41, Method: Composition-based stats. Identities = 88/161 (54%), Positives = 106/161 (65%), Gaps = 1/161 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 + + L E V + R+ F K T+ YP E+ SPRFRG HA RRYPNGEER Sbjct: 1 MIKQFFKTFLLAELVKGMTVTGRHLFSRKITVQYPEERTPVSPRFRGLHAQRRYPNGEER 60 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEA+CPA AITI+S R GTRRT RY+ID KCI+CG C+EACP DAIVE Sbjct: 61 CIACKLCEAVCPAMAITIDSEQRAD-GTRRTTRYEIDYQKCIFCGFCEEACPTDAIVETH 119 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FEF E + +LYY K LL GD++E+EI +N D+ YR Sbjct: 120 IFEFHGEKKGDLYYTKPMLLAIGDQYEAEIAKNRELDAKYR 160 >gi|186920127|ref|YP_001874781.1| NADH dehydrogenase subunit 8 [Hemiselmis andersenii] gi|186461073|gb|ACC78235.1| NADH dehydrogenase subunit 8 [Hemiselmis andersenii] Length = 163 Score = 170 bits (431), Expect = 5e-41, Method: Composition-based stats. Identities = 109/164 (66%), Positives = 127/164 (77%), Gaps = 2/164 (1%) Query: 1 MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59 M+ L+L E ++ L+YFF+ K T+NYPFEKG+ S RFRGEH LRRY +G Sbjct: 1 MKNYLDNTTRILYLSELCRGLWITLQYFFRRKVTLNYPFEKGALSSRFRGEHVLRRYESG 60 Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 EERCIACKLCEA+CPAQAITIE+ PR G+RRT RYDIDM KCI+CG CQEACPVDAIV Sbjct: 61 EERCIACKLCEAVCPAQAITIEAEPRYD-GSRRTTRYDIDMTKCIFCGFCQEACPVDAIV 119 Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 EGPNFE+ATET +EL Y+KE+LL NGDRWE EI NI T+S YR Sbjct: 120 EGPNFEYATETHEELLYNKEKLLKNGDRWEIEIQANIATESFYR 163 >gi|51473963|ref|YP_067720.1| NADH dehydrogenase subunit I [Rickettsia typhi str. Wilmington] gi|81389938|sp|Q68VV4|NUOI_RICTY RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|51460275|gb|AAU04238.1| NADH dehydrogenase (ubiquinone) subunit I [Rickettsia typhi str. Wilmington] Length = 159 Score = 170 bits (431), Expect = 5e-41, Method: Composition-based stats. Identities = 108/160 (67%), Positives = 118/160 (73%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + FL E V L L+YFFK K TINYP+EK SPRF+GEHALRRY NGEERC Sbjct: 1 MINYLKSFFLYEIVRGLTLTLKYFFKPKVTINYPYEKSPVSPRFKGEHALRRYENGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEA+CPAQAI IES R G+RRT RYDIDM KCIYCGLCQEACPVDAIVEGPN Sbjct: 61 IACKLCEAVCPAQAIVIESDERDD-GSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGPN 119 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FEFA+ T L YDKERLL NGD+WE E+ + D YR Sbjct: 120 FEFASLTHTALIYDKERLLYNGDKWEQELTNKLHKDYQYR 159 >gi|157829061|ref|YP_001495303.1| NADH dehydrogenase subunit I [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933787|ref|YP_001650576.1| NADH dehydrogenase subunit I [Rickettsia rickettsii str. Iowa] gi|226737414|sp|B0BVB0|NUOI_RICRO RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|226737415|sp|A8GTS0|NUOI_RICRS RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|157801542|gb|ABV76795.1| NADH dehydrogenase subunit I [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908874|gb|ABY73170.1| NADH-quinone oxidoreductase chain I [Rickettsia rickettsii str. Iowa] Length = 159 Score = 170 bits (431), Expect = 5e-41, Method: Composition-based stats. Identities = 108/160 (67%), Positives = 118/160 (73%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + FL E V L L+YFFK K TINYP+EK SPRF+GEHALRRY +GEERC Sbjct: 1 MINYLKSFFLYEIVRGMALTLKYFFKPKVTINYPYEKSPISPRFKGEHALRRYEHGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAI IE+ R DG+RRT RYDIDM KCIYCGLCQEACPVDAIVEGPN Sbjct: 61 IACKLCEAICPAQAIVIEADER-EDGSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGPN 119 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FEFA+ T L YDKERLL NGDRWE + + D YR Sbjct: 120 FEFASLTHTALIYDKERLLQNGDRWEQALASKLHKDYEYR 159 >gi|295689616|ref|YP_003593309.1| NADH-quinone oxidoreductase subunit I [Caulobacter segnis ATCC 21756] gi|295431519|gb|ADG10691.1| NADH-quinone oxidoreductase, chain I [Caulobacter segnis ATCC 21756] Length = 163 Score = 170 bits (430), Expect = 6e-41, Method: Composition-based stats. Identities = 113/160 (70%), Positives = 128/160 (80%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 V L +F GAF L ++Y K T+ YP E+ SPRFRGEHALRRYP+GEERC Sbjct: 5 ITQAVKGAALLDFAGAFGLAMKYMVAPKKTVIYPNERNPQSPRFRGEHALRRYPSGEERC 64 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEA+CPAQAITIE+ PR DG+RRT RYDIDM+KCIYCGLCQEACPVDAIVEGPN Sbjct: 65 IACKLCEAVCPAQAITIEAEPR-EDGSRRTTRYDIDMVKCIYCGLCQEACPVDAIVEGPN 123 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 EFATETR+ELYYDKERLL+NGDRWE I +N+ D+PYR Sbjct: 124 IEFATETREELYYDKERLLDNGDRWERLIAKNLELDAPYR 163 >gi|212212190|ref|YP_002303126.1| NADH dehydrogenase subunit I [Coxiella burnetii CbuG_Q212] gi|212010600|gb|ACJ17981.1| NADH-quinone oxidoreductase chain I [Coxiella burnetii CbuG_Q212] Length = 168 Score = 170 bits (430), Expect = 7e-41, Method: Composition-based stats. Identities = 90/163 (55%), Positives = 109/163 (66%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 MR + + L E + L LRYF++ K TI+YP E+ +S RFRG ALRRYPNGE Sbjct: 6 MRRLKQIIKSFTLWELLKGLSLTLRYFYRKKVTIHYPDEEVPSSFRFRGMLALRRYPNGE 65 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIE+GPR DG+RRT YDID KCI CG C+EACPVDAIV Sbjct: 66 ERCIACKLCEAVCPACAITIEAGPREADGSRRTTLYDIDAFKCINCGFCEEACPVDAIVL 125 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 P ++ + R KE+LL GDR+E +I R+ D YR Sbjct: 126 TPEMHYSIKDRGGNILTKEKLLMIGDRYEEQIARDRAKDKKYR 168 >gi|293603927|ref|ZP_06686342.1| NADH-quinone oxidoreductase subunit I [Achromobacter piechaudii ATCC 43553] gi|292817764|gb|EFF76830.1| NADH-quinone oxidoreductase subunit I [Achromobacter piechaudii ATCC 43553] Length = 162 Score = 170 bits (430), Expect = 7e-41, Method: Composition-based stats. Identities = 95/163 (58%), Positives = 113/163 (69%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + L L E + L +YFFK K T+ YP EK TS RFRG HALRRYPNGE Sbjct: 1 MEAIKDFFGSLMLTELLKGMRLTGKYFFKRKVTLRYPQEKTPTSARFRGLHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIES R DGTRRT RYDID+ KCI+CG C+E+CPVD+IVE Sbjct: 61 ERCIACKLCEAVCPALAITIESDQR-EDGTRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +LY+ K+ LL GDR+E++I R D+PYR Sbjct: 120 THIHEYHGEKRGDLYFTKDMLLAVGDRYEADIARRRADDAPYR 162 >gi|163855995|ref|YP_001630293.1| NADH dehydrogenase subunit I [Bordetella petrii DSM 12804] gi|163259723|emb|CAP42024.1| NADH-ubiquinone oxidoreductase, chain I [Bordetella petrii] Length = 162 Score = 170 bits (430), Expect = 7e-41, Method: Composition-based stats. Identities = 94/163 (57%), Positives = 111/163 (68%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + L L E + L +YFFK K T+ YP EK S RFRG HALRRYPNGE Sbjct: 1 MEAIKDFFGSLMLAELLKGMRLTGKYFFKRKVTLRYPMEKTPISARFRGLHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIES R GTRRT RYDID+ KCI+CG C+E+CPVD+IVE Sbjct: 61 ERCIACKLCEAVCPALAITIESDQRDD-GTRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +LY+ K+ LL GDR+E+EI R D+PYR Sbjct: 120 THIHEYHGEKRGDLYFTKDMLLAVGDRYEAEIARRRAEDAPYR 162 >gi|161830697|ref|YP_001597284.1| NADH dehydrogenase subunit I [Coxiella burnetii RSA 331] gi|81722524|sp|Q83BR3|NUOI_COXBU RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|189030927|sp|A9KBL3|NUOI_COXBN RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|189030928|sp|A9N8W4|NUOI_COXBR RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|161762564|gb|ABX78206.1| NADH dehydrogenase (ubiquinone), I subunit [Coxiella burnetii RSA 331] Length = 163 Score = 169 bits (429), Expect = 8e-41, Method: Composition-based stats. Identities = 91/163 (55%), Positives = 110/163 (67%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 MR + + L E + L LRYF++ K TI+YP E+ +S RFRG ALRRYPNGE Sbjct: 1 MRRLKQIIKSFTLWELLKGLSLTLRYFYRKKVTIHYPDEEVPSSFRFRGMLALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIE+GPR DG+RRT YDID KCI CG C+EACPVDAIV Sbjct: 61 ERCIACKLCEAVCPACAITIEAGPREADGSRRTTLYDIDAFKCINCGFCEEACPVDAIVL 120 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 P ++ + R E KE+LL GDR+E +I R+ D YR Sbjct: 121 TPEMHYSIKDRGENILTKEKLLMIGDRYEEQIARDRAKDKKYR 163 >gi|145589226|ref|YP_001155823.1| NADH dehydrogenase subunit I [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047632|gb|ABP34259.1| NADH dehydrogenase subunit I [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 163 Score = 169 bits (429), Expect = 8e-41, Method: Composition-based stats. Identities = 90/162 (55%), Positives = 109/162 (67%), Gaps = 1/162 (0%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 + + L LK+ + + RY FK K TI YP EK S RFRG HALRRY NGEE Sbjct: 3 KKISQFLDSLMLKDILTGMSITGRYLFKPKITIQYPEEKTPLSNRFRGLHALRRYENGEE 62 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCI CKLCEA+CPA AITIE+ R GTRRT RYDID+ KCI+CG C+EACPVDAIVE Sbjct: 63 RCIGCKLCEAVCPAYAITIETAERDD-GTRRTSRYDIDLTKCIFCGFCEEACPVDAIVET 121 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FE+ + R +LY+ K+ LL GD++E +I N D+PYR Sbjct: 122 NIFEYFGDKRGDLYFTKDMLLAVGDKYEKDIAVNRAIDAPYR 163 >gi|332285009|ref|YP_004416920.1| NADH dehydrogenase subunit I [Pusillimonas sp. T7-7] gi|330428962|gb|AEC20296.1| NADH dehydrogenase subunit I [Pusillimonas sp. T7-7] Length = 162 Score = 169 bits (429), Expect = 8e-41, Method: Composition-based stats. Identities = 95/163 (58%), Positives = 111/163 (68%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + L L E + L +YFFK K T+ YP EK TS RFRG HALRRYPNGE Sbjct: 1 MEAIKDFFGSLMLSEMLKGMRLTGKYFFKRKVTLRYPQEKTPTSARFRGLHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AI+IES R GTRRT RYDID+ KCI+CG C+E+CPVD+IVE Sbjct: 61 ERCIACKLCEAVCPALAISIESEERDD-GTRRTTRYDIDLAKCIFCGFCEESCPVDSIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +LYY K+ LL GDR+E EI R D+PYR Sbjct: 120 THILEYHGEKRGDLYYTKDMLLAIGDRYEPEIARRRSEDAPYR 162 >gi|171463534|ref|YP_001797647.1| NADH-quinone oxidoreductase, chain I [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171193072|gb|ACB44033.1| NADH-quinone oxidoreductase, chain I [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 163 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 90/162 (55%), Positives = 109/162 (67%), Gaps = 1/162 (0%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 + + L LK+ + + RY FK K T+ YP EK S RFRG HALRRY NGEE Sbjct: 3 KNISQFLDSLMLKDILTGMSITGRYLFKPKITVQYPDEKTPLSNRFRGLHALRRYENGEE 62 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCI CKLCEA+CPA AITIE+ R GTRRT RYDID+ KCI+CG C+EACPVDAIVE Sbjct: 63 RCIGCKLCEAVCPAYAITIETAERDD-GTRRTSRYDIDLTKCIFCGFCEEACPVDAIVET 121 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FE+ + R +LY+ K+ LL GDR+E +I N D+PYR Sbjct: 122 NIFEYFGDKRGDLYFTKDMLLAVGDRYEKDISANRAIDAPYR 163 >gi|23394377|gb|AAN31478.1| NADH dehydrogenase [Phytophthora infestans] Length = 211 Score = 169 bits (429), Expect = 1e-40, Method: Composition-based stats. Identities = 106/161 (65%), Positives = 120/161 (74%), Gaps = 1/161 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 + FL + A +L + K TINYP+EKG SPRFRGEHALRRYP+GEER Sbjct: 52 VIEKMSDTFFLSDVFRATWLAWEVHVERKVTINYPYEKGMLSPRFRGEHALRRYPSGEER 111 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEAICPAQAITIE+ PR G RRT RYDIDM KCIYCG CQEACPVDAIVEGP Sbjct: 112 CIACKLCEAICPAQAITIEAEPRAD-GARRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 170 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 NFEFATE+ +EL YDK +LL NGD+WE EI +N+ + YR Sbjct: 171 NFEFATESHEELLYDKAKLLANGDKWEFEIAKNLSVEQLYR 211 >gi|82702228|ref|YP_411794.1| NADH dehydrogenase subunit I [Nitrosospira multiformis ATCC 25196] gi|115502511|sp|Q2YA19|NUOI2_NITMU RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName: Full=NADH dehydrogenase I subunit I 2; AltName: Full=NDH-1 subunit I 2 gi|82410293|gb|ABB74402.1| NADH dehydrogenase subunit I [Nitrosospira multiformis ATCC 25196] Length = 162 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 89/163 (54%), Positives = 107/163 (65%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + L E + L R F K T+ +P EK SPRFRG HALRRYPNGE Sbjct: 1 MNRIKDFFRTFLLFELIKGMMLTGRNMFARKITVYFPEEKTPQSPRFRGLHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIES R DGTRRT RYDID+ KCI+CG C+E+CPVD+IVE Sbjct: 61 ERCIACKLCEAVCPALAITIESEQR-EDGTRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +L Y K+ LL GDR+E +I ++ D+ YR Sbjct: 120 TRILEYHGEKRGDLIYTKQMLLAVGDRYEEQIAKDRAADAGYR 162 >gi|16126185|ref|NP_420749.1| NADH dehydrogenase subunit I [Caulobacter crescentus CB15] gi|81782641|sp|Q9A6Y4|NUOI_CAUCR RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|13423401|gb|AAK23917.1| NADH dehydrogenase I, I subunit [Caulobacter crescentus CB15] Length = 163 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 114/160 (71%), Positives = 128/160 (80%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 V L +F GAF L ++Y K T+ YP E+ SPRFRGEHALRRYP+GEERC Sbjct: 5 ITQAVKGAALLDFAGAFGLAMKYMVAPKKTVIYPNERNPQSPRFRGEHALRRYPSGEERC 64 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAITIE+ PR DG+RRT RYDIDM+KCIYCGLCQEACPVDAIVEGPN Sbjct: 65 IACKLCEAICPAQAITIEAEPR-EDGSRRTTRYDIDMVKCIYCGLCQEACPVDAIVEGPN 123 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 EFATETR+ELYYDKERLL+NGDRWE I +N+ D+PYR Sbjct: 124 TEFATETREELYYDKERLLDNGDRWERLIAKNLELDAPYR 163 >gi|187477549|ref|YP_785573.1| NADH dehydrogenase subunit I [Bordetella avium 197N] gi|115502517|sp|Q2KUZ8|NUOI_BORA1 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|115422135|emb|CAJ48659.1| NADH dehydrogenase I chain I [Bordetella avium 197N] Length = 162 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 94/163 (57%), Positives = 112/163 (68%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + L L E L +YFFK K T+ YP EK SPRFRG HALRRYPNGE Sbjct: 1 MEAIKDFFGSLLLTELFKGMRLTGKYFFKRKMTLRYPTEKTPASPRFRGLHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIES R DGTRRT RYDID+ KCI+CG C+E+CPVD+IVE Sbjct: 61 ERCIACKLCEAVCPALAITIESDQR-EDGTRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +LY+ K+ LL GDR+E++I + D+PYR Sbjct: 120 THIHEYHGEKRGDLYFTKDMLLAVGDRYEADIAQRRAEDAPYR 162 >gi|254421090|ref|ZP_05034814.1| NADH-quinone oxidoreductase, chain I subfamily [Brevundimonas sp. BAL3] gi|196187267|gb|EDX82243.1| NADH-quinone oxidoreductase, chain I subfamily [Brevundimonas sp. BAL3] Length = 163 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 107/158 (67%), Positives = 126/158 (79%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 + + +GA L L+Y + K T+NYPFE+ SPRFRGEHALRRYP+GEERCIA Sbjct: 7 QAAKGAMMLDAIGAIGLTLKYMARPKATVNYPFERNPQSPRFRGEHALRRYPSGEERCIA 66 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEAICPAQAITIE+ PR G+RRT RYDIDM+KCIYCGLCQEACPVDAIVEGPN E Sbjct: 67 CKLCEAICPAQAITIEAEPRAD-GSRRTTRYDIDMVKCIYCGLCQEACPVDAIVEGPNSE 125 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 +A ETR+EL +DK RLL+NGDRWE +I +N+ D+PYR Sbjct: 126 YAVETREELLFDKARLLDNGDRWERQIAKNLELDAPYR 163 >gi|88812968|ref|ZP_01128211.1| NADH dehydrogenase subunit I [Nitrococcus mobilis Nb-231] gi|88789746|gb|EAR20870.1| NADH dehydrogenase subunit I [Nitrococcus mobilis Nb-231] Length = 162 Score = 169 bits (428), Expect = 1e-40, Method: Composition-based stats. Identities = 88/163 (53%), Positives = 110/163 (67%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M+ R + L E + L R+ F K T+ YP E+ SPRFRG HALRRYPNGE Sbjct: 1 MQAIRDLFNSFLLIELLQGLRLTGRHLFTRKYTVEYPEERAPQSPRFRGLHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIE+ PR GTRRT RYDID+ KCIYCG C+E+CPVD+IVE Sbjct: 61 ERCIACKLCEAVCPALAITIEAEPRAD-GTRRTTRYDIDLFKCIYCGFCEESCPVDSIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 +E+ E R E K+ LL GD++E ++ ++ D+PYR Sbjct: 120 TRIYEYHFERRGENIIHKQELLALGDQYEQQLAKDRAADAPYR 162 >gi|301098846|ref|XP_002898515.1| NADH dehydrogenase iron-sulfur protein 8, mitochondrial precursor [Phytophthora infestans T30-4] gi|262104940|gb|EEY62992.1| NADH dehydrogenase iron-sulfur protein 8, mitochondrial precursor [Phytophthora infestans T30-4] Length = 211 Score = 169 bits (427), Expect = 1e-40, Method: Composition-based stats. Identities = 105/161 (65%), Positives = 119/161 (73%), Gaps = 1/161 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 + FL + A +L + K TINYP+EKG SPRFRGEHALRRYP+GEER Sbjct: 52 VIEKMSDTFFLSDVFRATWLAWEVHVERKVTINYPYEKGMLSPRFRGEHALRRYPSGEER 111 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEAICPAQAITIE+ PR G RRT YDIDM KCIYCG CQEACPVDAIVEGP Sbjct: 112 CIACKLCEAICPAQAITIEAEPRAD-GARRTTSYDIDMTKCIYCGFCQEACPVDAIVEGP 170 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 NFEFATE+ +EL YDK +LL NGD+WE EI +N+ + YR Sbjct: 171 NFEFATESHEELLYDKAKLLANGDKWEFEIAKNLSVEQLYR 211 >gi|119897695|ref|YP_932908.1| NADH dehydrogenase subunit I [Azoarcus sp. BH72] gi|156632702|sp|A1K5B6|NUOI_AZOSB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|119670108|emb|CAL94021.1| putative NADH-ubiquinone oxidoreductase, chain I [Azoarcus sp. BH72] Length = 161 Score = 169 bits (427), Expect = 2e-40, Method: Composition-based stats. Identities = 93/159 (58%), Positives = 111/159 (69%), Gaps = 1/159 (0%) Query: 5 RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64 + + LFLKE V L R+FF K T+ +P EK S RFRG HALRRYPNGEERCI Sbjct: 4 KDYIGSLFLKELVKGMALTGRHFFARKITVQFPEEKTPQSARFRGLHALRRYPNGEERCI 63 Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 ACKLCEAICPA AITIES R DG+RRT RYDID+ KCI+CG C+EACPVDA+VE F Sbjct: 64 ACKLCEAICPAMAITIESEQR-EDGSRRTSRYDIDLTKCIFCGFCEEACPVDAVVETRVF 122 Query: 125 EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +LYY K+ LL GDR E +I + ++ +R Sbjct: 123 EYHGEQRGDLYYTKQMLLAVGDRHEQQIAADREQEAKFR 161 >gi|149927549|ref|ZP_01915803.1| NADH dehydrogenase subunit I [Limnobacter sp. MED105] gi|149823822|gb|EDM83048.1| NADH dehydrogenase subunit I [Limnobacter sp. MED105] Length = 163 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 91/162 (56%), Positives = 112/162 (69%), Gaps = 1/162 (0%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 ++ + ++ L L+E + L + Y F T+ YP EK SPRFRG HALRRY NGEE Sbjct: 3 QVVKEFLNSLLLREMLKGMALTMGYMFTQPITVLYPMEKTPMSPRFRGLHALRRYENGEE 62 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLCEA+CPA AITIES R DGTRRT RYDID+ KCI+CG C+E+CPVD+IVE Sbjct: 63 RCIACKLCEAVCPAMAITIESEQR-EDGTRRTSRYDIDLTKCIFCGFCEESCPVDSIVET 121 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +LY+ KE LL GDR+E+EI N D+ YR Sbjct: 122 HIHEYHGEKRGDLYFTKEMLLAVGDRYEAEIAANREADAAYR 163 >gi|156039527|ref|XP_001586871.1| hypothetical protein SS1G_11900 [Sclerotinia sclerotiorum 1980] gi|154697637|gb|EDN97375.1| hypothetical protein SS1G_11900 [Sclerotinia sclerotiorum 1980 UF-70] Length = 229 Score = 168 bits (426), Expect = 2e-40, Method: Composition-based stats. Identities = 102/162 (62%), Positives = 119/162 (73%), Gaps = 1/162 (0%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 + + E ++ L +F+ TI YPFEKG SPRFRGEHALRRYP+GEE Sbjct: 69 STMDKAGKYFLMSEMFRGMYVVLEQYFRPPYTIYYPFEKGPISPRFRGEHALRRYPSGEE 128 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLCEAICPAQAITIE+ R DG+RRT RYDIDM KCIYCG CQE+CPVDAIVE Sbjct: 129 RCIACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQESCPVDAIVES 187 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 PN E+ATETR+EL Y+KE+LL NGD+WE E+ D+PYR Sbjct: 188 PNAEYATETREELLYNKEKLLANGDKWEPELAAAARADAPYR 229 >gi|320581229|gb|EFW95450.1| NADH-quinone oxidoreductase chain I [Pichia angusta DL-1] Length = 212 Score = 168 bits (425), Expect = 2e-40, Method: Composition-based stats. Identities = 102/160 (63%), Positives = 120/160 (75%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + L E ++ L +F+A TI YPFEKG+ SPRFRGEHALRRYP+GEERC Sbjct: 54 LSKATRWYLLAEMFRGMYVVLEMYFRAPYTIYYPFEKGAISPRFRGEHALRRYPSGEERC 113 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAITIE+ R G+RRT +YDIDM KCIYCG CQE+CPVDAIVE PN Sbjct: 114 IACKLCEAICPAQAITIEAEERAD-GSRRTYKYDIDMTKCIYCGYCQESCPVDAIVETPN 172 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E++TETR+EL Y+KE+LL+NGDRWE E D+PYR Sbjct: 173 IEYSTETREELLYNKEKLLSNGDRWEQEYKYAADADAPYR 212 >gi|148285163|ref|YP_001249253.1| NADH dehydrogenase subunit I [Orientia tsutsugamushi str. Boryong] gi|189184497|ref|YP_001938282.1| NADH dehydrogenase subunit I [Orientia tsutsugamushi str. Ikeda] gi|156633535|sp|A5CFN6|NUOI_ORITB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|226737406|sp|B3CUK1|NUOI_ORITI RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|146740602|emb|CAM81256.1| NADH dehydrogenase I chain I [Orientia tsutsugamushi str. Boryong] gi|189181268|dbj|BAG41048.1| NADH dehydrogenase I chain I [Orientia tsutsugamushi str. Ikeda] Length = 161 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 109/163 (66%), Positives = 124/163 (76%), Gaps = 2/163 (1%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M+I L E + FL L+YFFK+K TI YP E SPRF+GEHALRRYP+GE Sbjct: 1 MKIT-NFTKSFLLYEIIVGMFLTLKYFFKSKVTIRYPNEVSKLSPRFKGEHALRRYPDGE 59 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEAICPAQAITIE+ + +G+RRT +YDIDM KCIYCGLCQEACPVDAIVE Sbjct: 60 ERCIACKLCEAICPAQAITIEAKEQ-PNGSRRTTKYDIDMTKCIYCGLCQEACPVDAIVE 118 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPN EFATET QEL Y+KE+LL NGD WE I +N+ DS YR Sbjct: 119 GPNLEFATETHQELLYNKEKLLRNGDMWEHVIAKNLKVDSIYR 161 >gi|332185682|ref|ZP_08387429.1| NADH-quinone oxidoreductase, chain I family protein [Sphingomonas sp. S17] gi|332014040|gb|EGI56098.1| NADH-quinone oxidoreductase, chain I family protein [Sphingomonas sp. S17] Length = 161 Score = 168 bits (425), Expect = 3e-40, Method: Composition-based stats. Identities = 119/158 (75%), Positives = 128/158 (81%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 V L EFV L LRYFFK K TINYP+EK SPRFRGEHALRRYPNGEERCIA Sbjct: 5 QYVKAFTLWEFVKGHALTLRYFFKPKATINYPYEKNPISPRFRGEHALRRYPNGEERCIA 64 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEAICPAQAITIE+ PR G+RRT RYDIDM KCIYCGLCQEACPVDAIVEGPNFE Sbjct: 65 CKLCEAICPAQAITIEAEPRDD-GSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGPNFE 123 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 F+TETR+EL YDK +LL+NGDRWES I N+ D+PYR Sbjct: 124 FSTETREELIYDKSKLLDNGDRWESAIAANLAADAPYR 161 >gi|219123199|ref|XP_002181917.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] gi|217406518|gb|EEC46457.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1] Length = 163 Score = 167 bits (424), Expect = 3e-40, Method: Composition-based stats. Identities = 109/161 (67%), Positives = 124/161 (77%), Gaps = 1/161 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 I + FL E A++L F K + TINYP+EKG SPRFRGEHALRRYP+GEER Sbjct: 4 ILDNSSRIFFLTEIARAWWLAGEVFLKPRVTINYPYEKGYLSPRFRGEHALRRYPSGEER 63 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEA CPAQAITIE R DG RRT RYDIDM KCIYCG CQEACPVDAIVEGP Sbjct: 64 CIACKLCEAACPAQAITIEVQER-EDGARRTTRYDIDMTKCIYCGFCQEACPVDAIVEGP 122 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 NFEFATET +EL YDKE+LL+NGD+WE +I +N++ + YR Sbjct: 123 NFEFATETHEELLYDKEKLLSNGDKWERQIAKNLMHEHLYR 163 >gi|253998391|ref|YP_003050454.1| NADH dehydrogenase subunit I [Methylovorus sp. SIP3-4] gi|313200468|ref|YP_004039126.1| NADH-quinone oxidoreductase subunit I [Methylovorus sp. MP688] gi|253985070|gb|ACT49927.1| NADH-quinone oxidoreductase, chain I [Methylovorus sp. SIP3-4] gi|312439784|gb|ADQ83890.1| NADH-quinone oxidoreductase, chain I [Methylovorus sp. MP688] Length = 163 Score = 167 bits (424), Expect = 3e-40, Method: Composition-based stats. Identities = 90/160 (56%), Positives = 110/160 (68%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + +S L L E + L RYFF K TI +P E+ SPRFRG HALRRYPNGEERC Sbjct: 5 IKTVLSSLMLVELLKGMALTGRYFFARKITIQFPEERTPMSPRFRGLHALRRYPNGEERC 64 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEA+CPA AITIES R D TRRT RYDID+ KCI+CG C+E+CPVD+IVE Sbjct: 65 IACKLCEAVCPAMAITIESEQR-EDNTRRTTRYDIDLTKCIFCGFCEESCPVDSIVETRI 123 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 F++ E R +L Y K LL GD++E++I + D+ YR Sbjct: 124 FDYHGEKRGDLLYTKPMLLAVGDKYETQIAADRSADAKYR 163 >gi|157804166|ref|YP_001492715.1| NADH dehydrogenase subunit I [Rickettsia canadensis str. McKiel] gi|226737413|sp|A8EZZ7|NUOI_RICCK RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|157785429|gb|ABV73930.1| NADH dehydrogenase subunit I [Rickettsia canadensis str. McKiel] Length = 159 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 108/160 (67%), Positives = 117/160 (73%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + FL E V L LRYFFKAK TINYP+EK SPRF+GEHALRRY NG ERC Sbjct: 1 MINYLKSFFLYEIVRGMALTLRYFFKAKVTINYPYEKSPVSPRFKGEHALRRYENGVERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAI IE+ DG+RRT RYDIDM KCIYCGLCQEACPVDAIVEGPN Sbjct: 61 IACKLCEAICPAQAIVIEAE-ALDDGSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGPN 119 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FEFA+ T L YDKERLL NGD+WE + + D YR Sbjct: 120 FEFASLTHTALIYDKERLLQNGDKWEQALTSKLYKDYEYR 159 >gi|103486787|ref|YP_616348.1| NADH dehydrogenase subunit I [Sphingopyxis alaskensis RB2256] gi|123379893|sp|Q1GTK7|NUOI_SPHAL RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|98976864|gb|ABF53015.1| NADH-quinone oxidoreductase, chain I [Sphingopyxis alaskensis RB2256] Length = 162 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 117/163 (71%), Positives = 127/163 (77%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M V L EFV A L L+YFFK K TINYPFEK SPRFRGEHALRRYPNGE Sbjct: 1 MSYVGHLVKSFTLWEFVKAHALTLKYFFKPKATINYPFEKNPLSPRFRGEHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPAQAITIE+ PR G+RRT RYDIDM KCIYCG CQEACPVDAIVE Sbjct: 61 ERCIACKLCEAVCPAQAITIEAEPRDD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 GPNFE+ATETR+EL YDK +LL NGD+WE I N+ D+PYR Sbjct: 120 GPNFEYATETREELLYDKAKLLANGDKWERAIAANLAADAPYR 162 >gi|297493958|gb|ADI40701.1| NADH dehydrogenase Fe-S protein 8 [Miniopterus schreibersii] Length = 166 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 104/151 (68%), Positives = 118/151 (78%), Gaps = 2/151 (1%) Query: 1 MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59 M+ + L E V + L Y F+ TINYPFEKG SPRFRGEHALRRYP+G Sbjct: 17 MKSVTDRAAQTLLWTELVRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 76 Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 EERCIACKLCEA+CPAQAITIE+ PR G+RRT RYDIDM KCIYCG CQEACPVDAIV Sbjct: 77 EERCIACKLCEAVCPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 135 Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWES 150 EGPNFEF+TET +EL Y+KE+LLNNGD+WE+ Sbjct: 136 EGPNFEFSTETHEELLYNKEKLLNNGDKWEA 166 >gi|255019915|ref|ZP_05291990.1| NADH-ubiquinone oxidoreductase chain I [Acidithiobacillus caldus ATCC 51756] gi|254970695|gb|EET28182.1| NADH-ubiquinone oxidoreductase chain I [Acidithiobacillus caldus ATCC 51756] Length = 163 Score = 167 bits (424), Expect = 4e-40, Method: Composition-based stats. Identities = 91/159 (57%), Positives = 108/159 (67%), Gaps = 1/159 (0%) Query: 5 RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64 + FL E + L RYFF K T+ YP E+ SPRFRG HALRRY NGEERCI Sbjct: 6 KQWFHSFFLTELLRGMQLTGRYFFGRKFTVQYPEERTPQSPRFRGLHALRRYENGEERCI 65 Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 +CKLCEA+CPA AITI R GTRRT YDID+ KCI+CGLC+E+CPVD+IVE F Sbjct: 66 SCKLCEAVCPALAITIRGEERAD-GTRRTTAYDIDLSKCIFCGLCEESCPVDSIVESRVF 124 Query: 125 EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 ++ ETR EL Y+KERLL NGDR E ++ + D PYR Sbjct: 125 DYHAETRAELLYNKERLLANGDRLERQLAADRAADRPYR 163 >gi|218193826|gb|EEC76253.1| hypothetical protein OsI_13702 [Oryza sativa Indica Group] Length = 261 Score = 167 bits (423), Expect = 5e-40, Method: Composition-based stats. Identities = 117/199 (58%), Positives = 131/199 (65%), Gaps = 39/199 (19%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKA-------------------------------- 30 +F +++ LFL E V L L+YFF+ Sbjct: 64 VFERSINTLFLTEMVRGLMLTLKYFFEKNINYPFEKGPLSPRFRGEHALRRYPTGEERCI 123 Query: 31 ------KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84 TINYPFEKG SPRFRGEHALRRYP GEERCIACKLCEAICPAQAITIE+ Sbjct: 124 ACKLCEAVTINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAICPAQAITIEAEE 183 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNN 144 R DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFEFATET +EL YDKE+LL N Sbjct: 184 R-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLEN 242 Query: 145 GDRWESEIVRNIVTDSPYR 163 GDRWE+EI N+ ++S YR Sbjct: 243 GDRWETEIAANLESESLYR 261 >gi|329889339|ref|ZP_08267682.1| NADH-quinone oxidoreductase subunit 9 [Brevundimonas diminuta ATCC 11568] gi|328844640|gb|EGF94204.1| NADH-quinone oxidoreductase subunit 9 [Brevundimonas diminuta ATCC 11568] Length = 151 Score = 167 bits (422), Expect = 5e-40, Method: Composition-based stats. Identities = 112/152 (73%), Positives = 125/152 (82%), Gaps = 1/152 (0%) Query: 12 FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71 L + GA L ++Y K K T+NYPFE+ SPRFRGEHALRRYPNGEERCIACKLCEA Sbjct: 1 MLTDVFGAVGLSMKYMMKPKATVNYPFERNPQSPRFRGEHALRRYPNGEERCIACKLCEA 60 Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 ICPAQAITIE+ PR G+RRT RYDIDM+KCIYCGLCQEACPVDAIVEGPN EFATETR Sbjct: 61 ICPAQAITIEAEPRAD-GSRRTTRYDIDMVKCIYCGLCQEACPVDAIVEGPNSEFATETR 119 Query: 132 QELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 +EL YDK RLL+NGDRWE I +N+ D+PYR Sbjct: 120 EELLYDKARLLDNGDRWERLIAKNLELDAPYR 151 >gi|309379794|emb|CBX21570.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 162 Score = 167 bits (422), Expect = 6e-40, Method: Composition-based stats. Identities = 90/163 (55%), Positives = 106/163 (65%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M V L E V + L+ FF K TI +P EK S RFRG HA RRYPNGE Sbjct: 1 MNNMANLVKTFLLGELVKGLGVTLKNFFARKDTIYFPEEKTPQSVRFRGLHAQRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AI IES R DGTRRT RYDID+ KCI+CG C+EACP DAIVE Sbjct: 61 ERCIACKLCEAVCPAMAINIESEER-EDGTRRTKRYDIDLTKCIFCGFCEEACPTDAIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FE+ E + +L+ K LL GD++E+EI + D+PYR Sbjct: 120 THIFEYHGEKKGDLHMTKPILLAIGDKYEAEIAKRKAADAPYR 162 >gi|160872870|ref|ZP_02063002.1| NADH-quinone oxidoreductase subunit i 2 (nadhdehydrogenase i subunit i 2) (ndh-1 subunit i 2) [Rickettsiella grylli] gi|159121669|gb|EDP47007.1| NADH-quinone oxidoreductase subunit i 2 (nadhdehydrogenase i subunit i 2) (ndh-1 subunit i 2) [Rickettsiella grylli] Length = 165 Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats. Identities = 87/163 (53%), Positives = 107/163 (65%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 +R + L E + RYFFK K T+ +P E+ S RFRG HALRRYPNGE Sbjct: 4 LRKIIQWIKTFTLWELFKGLGVTGRYFFKKKVTLQFPEEETPRSVRFRGLHALRRYPNGE 63 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIE+ PR DG+RRT Y+ID+ KCIYCG C+E+CPVDAIVE Sbjct: 64 ERCIACKLCEAVCPALAITIEAEPR-EDGSRRTTLYEIDLFKCIYCGFCEESCPVDAIVE 122 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + E R E K++LL GDR+E +I + D+PYR Sbjct: 123 TNIPHYHFENRGEQIMTKQKLLAIGDRYEKQIAKERAEDAPYR 165 >gi|225024115|ref|ZP_03713307.1| hypothetical protein EIKCOROL_00983 [Eikenella corrodens ATCC 23834] gi|224943140|gb|EEG24349.1| hypothetical protein EIKCOROL_00983 [Eikenella corrodens ATCC 23834] Length = 159 Score = 166 bits (421), Expect = 8e-40, Method: Composition-based stats. Identities = 89/158 (56%), Positives = 106/158 (67%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 V L E V + L+ FF K TI +P EK S RFRG HA RRYPNGEERCIA Sbjct: 3 NLVKTFLLGELVKGMGVTLKNFFARKDTIYFPEEKTPQSVRFRGLHAQRRYPNGEERCIA 62 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEA+CPA AI IES R DGTRRT RYDID+ KCI+CG C+EACP DAIVE FE Sbjct: 63 CKLCEAVCPAMAINIESEER-EDGTRRTTRYDIDLTKCIFCGFCEEACPTDAIVETHIFE 121 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + E + +L++ K LL GD++E+EI + D+PYR Sbjct: 122 YHGEKKGDLHFTKPMLLAIGDQYEAEIAKRKAADAPYR 159 >gi|254468778|ref|ZP_05082184.1| NADH-quinone oxidoreductase chain i [beta proteobacterium KB13] gi|207087588|gb|EDZ64871.1| NADH-quinone oxidoreductase chain i [beta proteobacterium KB13] Length = 163 Score = 166 bits (419), Expect = 1e-39, Method: Composition-based stats. Identities = 91/164 (55%), Positives = 112/164 (68%), Gaps = 2/164 (1%) Query: 1 MRIFRCNV-SFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59 MR N+ L L E + L L YFF K TI YP +K SPRFRG HALRRYPNG Sbjct: 1 MRKLVSNISKSLSLYELLKGMKLTLSYFFAKKVTIQYPEQKTPQSPRFRGLHALRRYPNG 60 Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 EERCIACKLCEA+CPA AITIES R D +RRT RYDID+ KCI+CG C+E+CPVD+IV Sbjct: 61 EERCIACKLCEAVCPAMAITIESELR-EDNSRRTTRYDIDLTKCIFCGFCEESCPVDSIV 119 Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E FE+ E R +L Y K+ LL+ G ++E +I ++ ++ YR Sbjct: 120 ETRIFEYHGEERGDLLYTKDMLLDVGKKYEKQIAKDRQQEAKYR 163 >gi|329118908|ref|ZP_08247603.1| NADH-quinone oxidoreductase subunit I [Neisseria bacilliformis ATCC BAA-1200] gi|327464936|gb|EGF11226.1| NADH-quinone oxidoreductase subunit I [Neisseria bacilliformis ATCC BAA-1200] Length = 159 Score = 165 bits (418), Expect = 1e-39, Method: Composition-based stats. Identities = 89/158 (56%), Positives = 105/158 (66%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 V L E V + L+ FF K TI +P EK S RFRG HA RRYPNGEERCIA Sbjct: 3 NLVKTFLLGELVKGMGVTLKNFFARKDTIYFPEEKTPQSVRFRGLHAQRRYPNGEERCIA 62 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEA+CPA AI IES R DGTRRT RYDID+ KCI+CG C+EACP DAIVE FE Sbjct: 63 CKLCEAVCPAMAINIESEER-EDGTRRTTRYDIDLTKCIFCGFCEEACPTDAIVETHIFE 121 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + E + +L++ K LL GD++E EI + D+PYR Sbjct: 122 YHGEKKGDLHFTKPMLLAIGDQYEEEIAKRKAADAPYR 159 >gi|325267328|ref|ZP_08133990.1| NADH-quinone oxidoreductase subunit I [Kingella denitrificans ATCC 33394] gi|324981265|gb|EGC16915.1| NADH-quinone oxidoreductase subunit I [Kingella denitrificans ATCC 33394] Length = 195 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 88/158 (55%), Positives = 104/158 (65%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 L E V + L+ FF K TI +P EK S RFRG HA RRYPNGEERCIA Sbjct: 39 NFFKTFLLGELVKGMGVTLKNFFARKDTIYFPEEKTPQSVRFRGLHAQRRYPNGEERCIA 98 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEA+CPA AI IES R DGTRRT RYDID+ KCI+CG C+EACP DAIVE FE Sbjct: 99 CKLCEAVCPAMAINIESEER-EDGTRRTTRYDIDLTKCIFCGFCEEACPTDAIVETHIFE 157 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + E + +L+ K LL GD++E+EI + D+PYR Sbjct: 158 YHGEKKGDLHMTKPILLAIGDKYEAEIAKRKAADAPYR 195 >gi|148555900|ref|YP_001263482.1| NADH dehydrogenase subunit I [Sphingomonas wittichii RW1] gi|148501090|gb|ABQ69344.1| NADH-quinone oxidoreductase, chain I [Sphingomonas wittichii RW1] Length = 161 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 114/158 (72%), Positives = 128/158 (81%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 + L EFV A +L L+YFF+AK TINYPFEK SPRFRGEHALRRYPNGEERCIA Sbjct: 5 HIIKSFTLWEFVKAHWLTLKYFFRAKATINYPFEKNPLSPRFRGEHALRRYPNGEERCIA 64 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEA+CPAQAITIE+ PR G+RRT RYDIDM KCI+CG CQEACPVDAIVEGPNFE Sbjct: 65 CKLCEAVCPAQAITIEAEPRDD-GSRRTTRYDIDMTKCIFCGFCQEACPVDAIVEGPNFE 123 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 ++TETR+EL YDK +LL NGDRWE I N+ D+PYR Sbjct: 124 YSTETREELIYDKAKLLANGDRWEPAIAANLAADAPYR 161 >gi|240280829|gb|EER44333.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Ajellomyces capsulatus H143] Length = 150 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 102/151 (67%), Positives = 117/151 (77%), Gaps = 1/151 (0%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + E + + L FF+ TI YPFEKG SPRFRGEHALRRYP+GEERCIACKLCEAI Sbjct: 1 MTEMLRGMDVVLEQFFRPPYTIFYPFEKGPISPRFRGEHALRRYPSGEERCIACKLCEAI 60 Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 CPA AITIE+ R DG+RRT RYDIDM KCIYCG CQE+CPVDAIVE PN E+ATETR+ Sbjct: 61 CPALAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQESCPVDAIVESPNAEYATETRE 119 Query: 133 ELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 EL Y+KE+LL NGD+WE E+ D+PYR Sbjct: 120 ELLYNKEKLLANGDKWEPELAAVARADAPYR 150 >gi|118498233|ref|YP_899283.1| NADH dehydrogenase subunit I [Francisella tularensis subsp. novicida U112] gi|156503296|ref|YP_001429361.1| NADH dehydrogenase subunit I [Francisella tularensis subsp. holarctica FTNF002-00] gi|194324417|ref|ZP_03058190.1| NADH-quinone oxidoreductase, chain i family [Francisella tularensis subsp. novicida FTE] gi|208780260|ref|ZP_03247602.1| NADH-quinone oxidoreductase, chain i family [Francisella novicida FTG] gi|254373574|ref|ZP_04989060.1| NADH dehydrogenase I [Francisella tularensis subsp. novicida GA99-3549] gi|254375041|ref|ZP_04990521.1| NADH-quinone oxidoreductase subunit I [Francisella novicida GA99-3548] gi|290952997|ref|ZP_06557618.1| NADH dehydrogenase subunit I [Francisella tularensis subsp. holarctica URFT1] gi|295313817|ref|ZP_06804390.1| NADH dehydrogenase subunit I [Francisella tularensis subsp. holarctica URFT1] gi|156633519|sp|A0Q8G4|NUOI_FRATN RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|166918792|sp|A7NEK2|NUOI_FRATF RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|118424139|gb|ABK90529.1| NADH dehydrogenase I, I subunit [Francisella novicida U112] gi|151571298|gb|EDN36952.1| NADH dehydrogenase I [Francisella novicida GA99-3549] gi|151572759|gb|EDN38413.1| NADH-quinone oxidoreductase subunit I [Francisella novicida GA99-3548] gi|156253899|gb|ABU62405.1| NADH-quinone oxidoreductase, chain I [Francisella tularensis subsp. holarctica FTNF002-00] gi|194321482|gb|EDX18967.1| NADH-quinone oxidoreductase, chain i family [Francisella tularensis subsp. novicida FTE] gi|208743909|gb|EDZ90211.1| NADH-quinone oxidoreductase, chain i family [Francisella novicida FTG] gi|332184788|gb|AEE27042.1| NADH-ubiquinone oxidoreductase chain I [Francisella cf. novicida 3523] gi|332678969|gb|AEE88098.1| NADH-ubiquinone oxidoreductase chain I [Francisella cf. novicida Fx1] Length = 162 Score = 165 bits (418), Expect = 2e-39, Method: Composition-based stats. Identities = 81/163 (49%), Positives = 103/163 (63%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 MR + L E + + ++FF K T+ YP EK S RFRG HALRRY NGE Sbjct: 1 MRNITNFLKTFLLWELLKGLKVTGKHFFTRKVTVQYPDEKTPISNRFRGLHALRRYENGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCE +CPA AITI S R DGTRRT Y+ID+ KCI+CG C+E+CPVD+IVE Sbjct: 61 ERCIACKLCEVVCPALAITINSTER-EDGTRRTSSYEIDLFKCIFCGYCEESCPVDSIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R E K +LL GD++E++I + + D +R Sbjct: 120 TNILEYHFEERGENIMTKAKLLAIGDKYEAQIAADRLQDKDFR 162 >gi|58699331|ref|ZP_00374109.1| NADH dehydrogenase I, I subunit [Wolbachia endosymbiont of Drosophila ananassae] gi|58534154|gb|EAL58375.1| NADH dehydrogenase I, I subunit [Wolbachia endosymbiont of Drosophila ananassae] Length = 155 Score = 165 bits (417), Expect = 2e-39, Method: Composition-based stats. Identities = 106/152 (69%), Positives = 118/152 (77%), Gaps = 1/152 (0%) Query: 11 LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70 L E + F + L+Y FK K T+ YP EKG SPRFRGEHALRRYPNGEERCIACKLCE Sbjct: 4 LVFVELIKGFVITLKYMFKPKVTLRYPMEKGPLSPRFRGEHALRRYPNGEERCIACKLCE 63 Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 ICPAQAI IE+ R DG+RRT RYDIDM KCIYCGLCQEACPVDAIVEGPNFEFATET Sbjct: 64 VICPAQAIVIEAEER-EDGSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGPNFEFATET 122 Query: 131 RQELYYDKERLLNNGDRWESEIVRNIVTDSPY 162 R+EL Y+KE+LL NG+ WE I + + PY Sbjct: 123 REELMYNKEKLLRNGEVWEDAIALRLKKNRPY 154 >gi|238023170|ref|ZP_04603596.1| hypothetical protein GCWU000324_03096 [Kingella oralis ATCC 51147] gi|237865553|gb|EEP66693.1| hypothetical protein GCWU000324_03096 [Kingella oralis ATCC 51147] Length = 159 Score = 165 bits (417), Expect = 2e-39, Method: Composition-based stats. Identities = 89/158 (56%), Positives = 105/158 (66%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 V L E V + L+ FF K TI +P EK S RFRG HA RRYPNGEERCIA Sbjct: 3 NLVKTFLLGELVKGMGVTLKNFFARKDTIYFPEEKTPQSVRFRGLHAQRRYPNGEERCIA 62 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEA+CPA AI IES R DGTRRT RYDID+ KCI+CG C+EACP DAIVE FE Sbjct: 63 CKLCEAVCPAMAINIESEER-EDGTRRTTRYDIDLTKCIFCGFCEEACPTDAIVETHIFE 121 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + E + +L+ K LL GD++E+EI + D+PYR Sbjct: 122 YHGEKKGDLHMTKPILLAIGDKYEAEIAKRKAADAPYR 159 >gi|332968226|gb|EGK07303.1| NADH-quinone oxidoreductase subunit I [Kingella kingae ATCC 23330] Length = 159 Score = 164 bits (416), Expect = 2e-39, Method: Composition-based stats. Identities = 89/158 (56%), Positives = 105/158 (66%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 V L E V + L+ FF K TI +P EK S RFRG HA RRYPNGEERCIA Sbjct: 3 NFVKTFLLGELVKGMGVTLKNFFARKDTIYFPEEKTPQSVRFRGLHAQRRYPNGEERCIA 62 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEA+CPA AI IES R DGTRRT RYDID+ KCI+CG C+EACP DAIVE FE Sbjct: 63 CKLCEAVCPAMAINIESEQR-EDGTRRTTRYDIDLTKCIFCGFCEEACPTDAIVETHIFE 121 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + E + +L+ K LL GD++E+EI + D+PYR Sbjct: 122 YHGEKKGDLHMTKPILLAIGDKYEAEIAKRKAADAPYR 159 >gi|313216915|emb|CBY38127.1| unnamed protein product [Oikopleura dioica] gi|313233922|emb|CBY10090.1| unnamed protein product [Oikopleura dioica] gi|313237823|emb|CBY12956.1| unnamed protein product [Oikopleura dioica] Length = 159 Score = 164 bits (416), Expect = 2e-39, Method: Composition-based stats. Identities = 104/152 (68%), Positives = 115/152 (75%), Gaps = 1/152 (0%) Query: 12 FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71 F+ E + + FF TINYPFEKG SPRFRGEHALRRYP GEERCIACKLCEA Sbjct: 9 FISEIFRGVGMGIGKFFVEPATINYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEA 68 Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 CPAQAITIE+ R G+RRT RYDIDM KCIYCG C EACPVDAIVEGPNFE++TET Sbjct: 69 ACPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCMEACPVDAIVEGPNFEYSTETH 127 Query: 132 QELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 +EL Y+KE+LL NGD+WE EI NI D YR Sbjct: 128 EELLYNKEKLLMNGDKWEPEIAANIQMDYMYR 159 >gi|297538948|ref|YP_003674717.1| NADH-quinone oxidoreductase subunit I [Methylotenera sp. 301] gi|297258295|gb|ADI30140.1| NADH-quinone oxidoreductase, chain I [Methylotenera sp. 301] Length = 163 Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats. Identities = 89/160 (55%), Positives = 107/160 (66%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + +S L L E + L RYFF K T+ YP E S RFRG HALRRYPNGEERC Sbjct: 5 IKSTLSSLMLVELLKGMALTGRYFFAPKITVQYPEEVTPQSNRFRGLHALRRYPNGEERC 64 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEA+CPA AITIES R D TRRT RYDID+ KCI+CG+C+E+CPVD+IVE Sbjct: 65 IACKLCEAVCPAMAITIESEQR-EDNTRRTTRYDIDLTKCIFCGMCEESCPVDSIVETRV 123 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 F++ E R +L Y KE LL GD+ E +I + D +R Sbjct: 124 FDYHGEQRGDLLYTKEMLLAVGDKHEKQIAADRAQDKEFR 163 >gi|302879333|ref|YP_003847897.1| NADH-quinone oxidoreductase, chain I [Gallionella capsiferriformans ES-2] gi|302582122|gb|ADL56133.1| NADH-quinone oxidoreductase, chain I [Gallionella capsiferriformans ES-2] Length = 162 Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats. Identities = 86/163 (52%), Positives = 102/163 (62%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + L E + L RY F K T+ +P EK S RFRG HA RRY NGE Sbjct: 1 MEKIKDFFKTFLLIELLKGMALTGRYMFARKITVQFPDEKTPQSFRFRGLHAQRRYENGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCI CKLCEA+CPA AI I R DGTRRT +YDID+ KCI+CG C+E+CPVDAIVE Sbjct: 61 ERCIGCKLCEAVCPAMAIKIAVAER-EDGTRRTTQYDIDLTKCIFCGFCEESCPVDAIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FE+ E R +LYY K LL GD+ E++I R+ DS YR Sbjct: 120 TRVFEYHGEKRGDLYYTKPMLLAVGDKHEAQIARDRAADSKYR 162 >gi|225630646|ref|YP_002727437.1| NADH dehydrogenase I, I subunit [Wolbachia sp. wRi] gi|225592627|gb|ACN95646.1| NADH dehydrogenase I, I subunit [Wolbachia sp. wRi] Length = 169 Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats. Identities = 105/160 (65%), Positives = 120/160 (75%), Gaps = 1/160 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 + + + E + F + L+Y FK K T+ YP EKG SPRFRGEHALRRYPNGEER Sbjct: 10 MLKKLAWYWSFVELIKGFVITLKYMFKPKVTLRYPMEKGPLSPRFRGEHALRRYPNGEER 69 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCE ICPAQAI IE+ R DG+RRT RYDIDM KCIYCGLCQEACPVDAIVEGP Sbjct: 70 CIACKLCEVICPAQAIVIEAEER-EDGSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGP 128 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPY 162 NFEFATETR+EL Y+KE+LL NG+ WE I + + PY Sbjct: 129 NFEFATETREELMYNKEKLLRNGEVWEDAIALRLKKNRPY 168 >gi|225560616|gb|EEH08897.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus G186AR] Length = 225 Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats. Identities = 99/160 (61%), Positives = 113/160 (70%), Gaps = 12/160 (7%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + + E + TI YPFEKG SPRFRGEHALRRYP+GEERC Sbjct: 78 LDKAGKYFLMTEMLRGI-----------YTIFYPFEKGPISPRFRGEHALRRYPSGEERC 126 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPA AITIE+ R DG+RRT RYDIDM KCIYCG CQE+CPVDAIVE PN Sbjct: 127 IACKLCEAICPALAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQESCPVDAIVESPN 185 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ATETR+EL Y+KE+LL NGD+WE E+ D+PYR Sbjct: 186 AEYATETREELLYNKEKLLANGDKWEPELAAVARADAPYR 225 >gi|325088907|gb|EGC42217.1| NADH-ubiquinone oxidoreductase [Ajellomyces capsulatus H88] Length = 225 Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats. Identities = 99/160 (61%), Positives = 113/160 (70%), Gaps = 12/160 (7%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + + E + TI YPFEKG SPRFRGEHALRRYP+GEERC Sbjct: 78 LDKAGKYFLMTEMLRGI-----------YTIFYPFEKGPISPRFRGEHALRRYPSGEERC 126 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPA AITIE+ R DG+RRT RYDIDM KCIYCG CQE+CPVDAIVE PN Sbjct: 127 IACKLCEAICPALAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQESCPVDAIVESPN 185 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ATETR+EL Y+KE+LL NGD+WE E+ D+PYR Sbjct: 186 AEYATETREELLYNKEKLLANGDKWEPELAAVARADAPYR 225 >gi|261379572|ref|ZP_05984145.1| NADH dehydrogenase, I subunit [Neisseria subflava NJ9703] gi|269214461|ref|ZP_05986605.2| NADH dehydrogenase, I subunit [Neisseria lactamica ATCC 23970] gi|296313738|ref|ZP_06863679.1| NADH dehydrogenase, I subunit [Neisseria polysaccharea ATCC 43768] gi|313669276|ref|YP_004049560.1| NADH dehydrogenase I chain I [Neisseria lactamica ST-640] gi|261391783|emb|CAX49238.1| NADH-quinone oxidoreductase chain I (NADH dehydrogenase I, chain I; NDH-1, chain I) [Neisseria meningitidis 8013] gi|269209739|gb|EEZ76194.1| NADH dehydrogenase, I subunit [Neisseria lactamica ATCC 23970] gi|284798046|gb|EFC53393.1| NADH dehydrogenase, I subunit [Neisseria subflava NJ9703] gi|296839661|gb|EFH23599.1| NADH dehydrogenase, I subunit [Neisseria polysaccharea ATCC 43768] gi|308388470|gb|ADO30790.1| NADH dehydrogenase I chain I [Neisseria meningitidis alpha710] gi|313006738|emb|CBN88208.1| NADH dehydrogenase I chain I [Neisseria lactamica 020-06] gi|325130978|gb|EGC53705.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis OX99.30304] Length = 159 Score = 164 bits (416), Expect = 3e-39, Method: Composition-based stats. Identities = 89/158 (56%), Positives = 105/158 (66%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 V L E V + L+ FF K TI +P EK S RFRG HA RRYPNGEERCIA Sbjct: 3 NLVKTFLLGELVKGLGVTLKNFFARKDTIYFPEEKTPQSVRFRGLHAQRRYPNGEERCIA 62 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEA+CPA AI IES R DGTRRT RYDID+ KCI+CG C+EACP DAIVE FE Sbjct: 63 CKLCEAVCPAMAINIESEER-EDGTRRTKRYDIDLTKCIFCGFCEEACPTDAIVETHIFE 121 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + E + +L+ K LL GD++E+EI + D+PYR Sbjct: 122 YHGEKKGDLHMTKPILLAIGDKYEAEIAKRKAADAPYR 159 >gi|294011317|ref|YP_003544777.1| NADH dehydrogenase I chain I [Sphingobium japonicum UT26S] gi|292674647|dbj|BAI96165.1| NADH dehydrogenase I chain I [Sphingobium japonicum UT26S] Length = 161 Score = 164 bits (415), Expect = 3e-39, Method: Composition-based stats. Identities = 116/158 (73%), Positives = 126/158 (79%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 V L EFV A L L+YFFK K TINYP+EK SPRFRGEHALRRYPNGEERCIA Sbjct: 5 YYVKSFTLWEFVKAHALTLKYFFKPKATINYPYEKNPISPRFRGEHALRRYPNGEERCIA 64 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEAICPAQAITIE+ PR G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE Sbjct: 65 CKLCEAICPAQAITIEAQPRDD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFE 123 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 F+TETR+EL YDK +LL NGD+WE I N+ D+PYR Sbjct: 124 FSTETREELIYDKAKLLENGDKWERAIAANLAADAPYR 161 >gi|167627161|ref|YP_001677661.1| NADH dehydrogenase subunit I [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|189030929|sp|B0TWQ2|NUOI_FRAP2 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|167597162|gb|ABZ87160.1| NADH dehydrogenase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 162 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 80/163 (49%), Positives = 102/163 (62%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 MR L E + + ++FF K T+ YP EK S RFRG HALRRY NGE Sbjct: 1 MRNITSFFKTFLLWELLKGMKVTGKHFFTRKVTVQYPDEKTPISNRFRGLHALRRYENGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCE +CPA AITI S R DG+RRT Y+ID+ KCI+CG C+E+CPVD+IVE Sbjct: 61 ERCIACKLCEVVCPALAITINSTER-EDGSRRTSSYEIDLFKCIFCGYCEESCPVDSIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R E K +LL GD++E++I + + D +R Sbjct: 120 TNILEYHFEERGENIMTKAKLLAIGDKYEAQIAADRLQDKDFR 162 >gi|319943356|ref|ZP_08017638.1| NADH-quinone oxidoreductase subunit I [Lautropia mirabilis ATCC 51599] gi|319743171|gb|EFV95576.1| NADH-quinone oxidoreductase subunit I [Lautropia mirabilis ATCC 51599] Length = 162 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 94/163 (57%), Positives = 110/163 (67%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 MR + S L E + L RY F K T+ YP +K SPRFRG HALRRY NGE Sbjct: 1 MRAIKDFFSSFLLLELLKGMKLTGRYLFARKITVQYPEQKTPLSPRFRGLHALRRYSNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIES R G RRT RYDID+ KCI+CGLC+E+CPVD+IVE Sbjct: 61 ERCIACKLCEAVCPAMAITIESAVRAD-GQRRTTRYDIDLTKCIFCGLCEESCPVDSIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FE+ E R +LY+ K+ LL GDR+ESEI D+PYR Sbjct: 120 THIFEYHGEKRGDLYFTKDMLLAVGDRYESEIAAAREADAPYR 162 >gi|154278457|ref|XP_001540042.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial precursor [Ajellomyces capsulatus NAm1] gi|150413627|gb|EDN09010.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial precursor [Ajellomyces capsulatus NAm1] Length = 225 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 99/160 (61%), Positives = 113/160 (70%), Gaps = 12/160 (7%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + + E + TI YPFEKG SPRFRGEHALRRYP+GEERC Sbjct: 78 LDKAGKYFLMTEMLRGI-----------YTIFYPFEKGPISPRFRGEHALRRYPSGEERC 126 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPA AITIE+ R DG+RRT RYDIDM KCIYCG CQE+CPVDAIVE PN Sbjct: 127 IACKLCEAICPALAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQESCPVDAIVESPN 185 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ATETR+EL Y+KE+LL NGD+WE E+ D+PYR Sbjct: 186 AEYATETREELLYNKEKLLANGDKWEPELAAVARADAPYR 225 >gi|294670450|ref|ZP_06735332.1| hypothetical protein NEIELOOT_02169 [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291307914|gb|EFE49157.1| hypothetical protein NEIELOOT_02169 [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 159 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 89/158 (56%), Positives = 106/158 (67%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 V L E V + L+ FF K TI +P EK S RFRG HA RRYPNGEERCIA Sbjct: 3 NLVKTFLLGELVKGMGVTLKNFFARKDTIYFPEEKTPQSVRFRGLHAQRRYPNGEERCIA 62 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEA+CPA AI IES R DGTRRT+RYDID+ KCI+CG C+EACP DAIVE FE Sbjct: 63 CKLCEAVCPAMAINIESEER-EDGTRRTIRYDIDLTKCIFCGFCEEACPTDAIVETHIFE 121 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + E + +L+ K LL GD++E+EI + D+PYR Sbjct: 122 YHGEKKGDLHMTKPILLAIGDKYEAEIAKRKAADAPYR 159 >gi|15676175|ref|NP_273307.1| NADH dehydrogenase subunit I [Neisseria meningitidis MC58] gi|59802064|ref|YP_208776.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae FA 1090] gi|121634122|ref|YP_974367.1| NADH dehydrogenase subunit I [Neisseria meningitidis FAM18] gi|161870814|ref|YP_001599987.1| NADH dehydrogenase subunit I [Neisseria meningitidis 053442] gi|194099639|ref|YP_002002770.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae NCCP11945] gi|218767059|ref|YP_002341571.1| NADH dehydrogenase subunit I [Neisseria meningitidis Z2491] gi|225077027|ref|ZP_03720226.1| hypothetical protein NEIFLAOT_02079 [Neisseria flavescens NRL30031/H210] gi|240014994|ref|ZP_04721907.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae DGI18] gi|240017442|ref|ZP_04723982.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae FA6140] gi|240081581|ref|ZP_04726124.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae FA19] gi|240113863|ref|ZP_04728353.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae MS11] gi|240116594|ref|ZP_04730656.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae PID18] gi|240118818|ref|ZP_04732880.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae PID1] gi|240122063|ref|ZP_04735025.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae PID24-1] gi|240124357|ref|ZP_04737313.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae PID332] gi|240126569|ref|ZP_04739455.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae SK-92-679] gi|240129034|ref|ZP_04741695.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae SK-93-1035] gi|241760745|ref|ZP_04758837.1| NADH-quinone oxidoreductase, i subunit [Neisseria flavescens SK114] gi|254494618|ref|ZP_05107789.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae 1291] gi|254805706|ref|YP_003083927.1| NADH dehydrogenase I chain I [Neisseria meningitidis alpha14] gi|255067292|ref|ZP_05319147.1| NADH dehydrogenase, I subunit [Neisseria sicca ATCC 29256] gi|260439645|ref|ZP_05793461.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae DGI2] gi|261364357|ref|ZP_05977240.1| NADH dehydrogenase, I subunit [Neisseria mucosa ATCC 25996] gi|261378531|ref|ZP_05983104.1| NADH dehydrogenase, I subunit [Neisseria cinerea ATCC 14685] gi|268685149|ref|ZP_06152011.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae SK-92-679] gi|298370371|ref|ZP_06981687.1| NADH dehydrogenase (ubiquinone), I subunit [Neisseria sp. oral taxon 014 str. F0314] gi|75355482|sp|Q5F623|NUOI_NEIG1 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|81542192|sp|Q9JQM2|NUOI_NEIMA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|81832764|sp|Q7DDS1|NUOI_NEIMB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|156633533|sp|A1KRT1|NUOI_NEIMF RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|7225474|gb|AAF40705.1| NADH dehydrogenase I, I subunit [Neisseria meningitidis MC58] gi|59718959|gb|AAW90364.1| putative NADH dehydrogenase I chain I [Neisseria gonorrhoeae FA 1090] gi|120865828|emb|CAM09560.1| NADH dehydrogenase I chain I [Neisseria meningitidis FAM18] gi|121051067|emb|CAM07337.1| NADH dehydrogenase I chain I [Neisseria meningitidis Z2491] gi|161596367|gb|ABX74027.1| NADH dehydrogenase I chain I [Neisseria meningitidis 053442] gi|193934929|gb|ACF30753.1| NADH dehydrogenase I chain I [Neisseria gonorrhoeae NCCP11945] gi|224951584|gb|EEG32793.1| hypothetical protein NEIFLAOT_02079 [Neisseria flavescens NRL30031/H210] gi|226513658|gb|EEH63003.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae 1291] gi|241318926|gb|EER55452.1| NADH-quinone oxidoreductase, i subunit [Neisseria flavescens SK114] gi|254669248|emb|CBA08124.1| NADH dehydrogenase I chain I [Neisseria meningitidis alpha14] gi|254670964|emb|CBA07648.1| NADH-ubiquinone oxidoreductase, chain I [Neisseria meningitidis alpha153] gi|254674112|emb|CBA09896.1| NADH-ubiquinone oxidoreductase, chain I [Neisseria meningitidis alpha275] gi|255048443|gb|EET43907.1| NADH dehydrogenase, I subunit [Neisseria sicca ATCC 29256] gi|268625433|gb|EEZ57833.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae SK-92-679] gi|269145081|gb|EEZ71499.1| NADH dehydrogenase, I subunit [Neisseria cinerea ATCC 14685] gi|288567621|gb|EFC89181.1| NADH dehydrogenase, I subunit [Neisseria mucosa ATCC 25996] gi|298281831|gb|EFI23320.1| NADH dehydrogenase (ubiquinone), I subunit [Neisseria sp. oral taxon 014 str. F0314] gi|316985179|gb|EFV64131.1| NADH-quinone oxidoreductase subunit 9 [Neisseria meningitidis H44/76] gi|319411266|emb|CBY91673.1| NADH-quinone oxidoreductase chain I (NADH dehydrogenase I, chain I; NDH-1, chain I) [Neisseria meningitidis WUE 2594] gi|325129047|gb|EGC51897.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis N1568] gi|325131604|gb|EGC54311.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis M6190] gi|325135054|gb|EGC57682.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis M13399] gi|325137077|gb|EGC59673.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis M0579] gi|325139141|gb|EGC61687.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis ES14902] gi|325141087|gb|EGC63590.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis CU385] gi|325143091|gb|EGC65438.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis 961-5945] gi|325143161|gb|EGC65507.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis 961-5945] gi|325145244|gb|EGC67523.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis M01-240013] gi|325145315|gb|EGC67593.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis M01-240013] gi|325197536|gb|ADY92992.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis G2136] gi|325199454|gb|ADY94909.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis H44/76] gi|325202921|gb|ADY98375.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis M01-240149] gi|325203367|gb|ADY98820.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis M01-240355] gi|325205336|gb|ADZ00789.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis M04-240196] gi|325207280|gb|ADZ02732.1| NADH:ubiquinone dehydrogenase, I subunit [Neisseria meningitidis NZ-05/33] Length = 159 Score = 164 bits (415), Expect = 4e-39, Method: Composition-based stats. Identities = 89/158 (56%), Positives = 105/158 (66%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 V L E V + L+ FF K TI +P EK S RFRG HA RRYPNGEERCIA Sbjct: 3 NLVKTFLLGELVKGMGVTLKNFFARKDTIYFPEEKTPQSVRFRGLHAQRRYPNGEERCIA 62 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEA+CPA AI IES R DGTRRT RYDID+ KCI+CG C+EACP DAIVE FE Sbjct: 63 CKLCEAVCPAMAINIESEER-EDGTRRTKRYDIDLTKCIFCGFCEEACPTDAIVETHIFE 121 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + E + +L+ K LL GD++E+EI + D+PYR Sbjct: 122 YHGEKKGDLHMTKPILLAIGDKYEAEIAKRKAADAPYR 159 >gi|62262897|gb|AAX78111.1| unknown protein [synthetic construct] Length = 197 Score = 164 bits (414), Expect = 5e-39, Method: Composition-based stats. Identities = 80/163 (49%), Positives = 103/163 (63%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 MR + L E + + ++FF K T+ YP EK S RFRG HALRRY NGE Sbjct: 27 MRNITNFLKTFLLWELLKGLKVTGKHFFTRKVTVQYPDEKTPISNRFRGLHALRRYENGE 86 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCE +CPA AITI S R DGTRRT Y++D+ KCI+CG C+E+CPVD+IVE Sbjct: 87 ERCIACKLCEVVCPALAITINSTER-EDGTRRTSSYEMDLFKCIFCGYCEESCPVDSIVE 145 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R E K +LL GD++E++I + + D +R Sbjct: 146 TNILEYHFEERGENIMTKAKLLAIGDKYEAQIAADRLQDKDFR 188 >gi|307293262|ref|ZP_07573108.1| NADH-quinone oxidoreductase, chain I [Sphingobium chlorophenolicum L-1] gi|306881328|gb|EFN12544.1| NADH-quinone oxidoreductase, chain I [Sphingobium chlorophenolicum L-1] Length = 161 Score = 164 bits (414), Expect = 5e-39, Method: Composition-based stats. Identities = 116/158 (73%), Positives = 128/158 (81%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 V L EFV A +L L+YFFK K TINYP+EK SPRFRGEHALRRYPNGEERCIA Sbjct: 5 YYVKSFTLWEFVKAHWLTLKYFFKPKATINYPYEKNPISPRFRGEHALRRYPNGEERCIA 64 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEAICPAQAITIE+ PR DG+RRT RYDIDM KCIYCG CQEACPVDA+VEGPNFE Sbjct: 65 CKLCEAICPAQAITIEAQPR-EDGSRRTTRYDIDMTKCIYCGFCQEACPVDAVVEGPNFE 123 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 F+TETR+EL YDK +LL NGD+WE I N+ D+PYR Sbjct: 124 FSTETREELIYDKAKLLENGDKWERAIAANLAADAPYR 161 >gi|56707219|ref|YP_169115.1| NADH dehydrogenase subunit I [Francisella tularensis subsp. tularensis SCHU S4] gi|89257082|ref|YP_514444.1| NADH dehydrogenase subunit I [Francisella tularensis subsp. holarctica LVS] gi|110669689|ref|YP_666246.1| NADH dehydrogenase subunit I [Francisella tularensis subsp. tularensis FSC198] gi|115315439|ref|YP_764162.1| NADH dehydrogenase subunit I [Francisella tularensis subsp. holarctica OSU18] gi|134301254|ref|YP_001121222.1| NADH dehydrogenase subunit I [Francisella tularensis subsp. tularensis WY96-3418] gi|167009474|ref|ZP_02274405.1| NADH dehydrogenase subunit I [Francisella tularensis subsp. holarctica FSC200] gi|187930996|ref|YP_001890980.1| NADH dehydrogenase subunit I [Francisella tularensis subsp. mediasiatica FSC147] gi|224456280|ref|ZP_03664753.1| NADH dehydrogenase subunit I [Francisella tularensis subsp. tularensis MA00-2987] gi|254368318|ref|ZP_04984336.1| NADH dehydrogenase I, I subunit [Francisella tularensis subsp. holarctica 257] gi|254368973|ref|ZP_04984986.1| NADH dehydrogenase subunit I [Francisella tularensis subsp. holarctica FSC022] gi|254371435|ref|ZP_04987436.1| NADH dehydrogenase [Francisella tularensis subsp. tularensis FSC033] gi|254874057|ref|ZP_05246767.1| NADH-quinone oxidoreductase subunit I [Francisella tularensis subsp. tularensis MA00-2987] gi|81598102|sp|Q5NIM7|NUOI_FRATT RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|115502530|sp|Q2A1F8|NUOI_FRATH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|122324576|sp|Q0BK59|NUOI_FRATO RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|123169702|sp|Q14K30|NUOI_FRAT1 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|156633520|sp|A4IW00|NUOI_FRATW RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|226737393|sp|B2SEV7|NUOI_FRATM RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|54114125|gb|AAV29696.1| NT02FT1744 [synthetic construct] gi|56603711|emb|CAG44672.1| NADH dehydrogenase I, I subunit [Francisella tularensis subsp. tularensis SCHU S4] gi|89144913|emb|CAJ80261.1| NADH dehydrogenase I, I subunit [Francisella tularensis subsp. holarctica LVS] gi|110320022|emb|CAL08055.1| NADH dehydrogenase I, I subunit [Francisella tularensis subsp. tularensis FSC198] gi|115130338|gb|ABI83525.1| NADH dehydrogenase (ubiquinone) [Francisella tularensis subsp. holarctica OSU18] gi|134049031|gb|ABO46102.1| NADH dehydrogenase I subunit I [Francisella tularensis subsp. tularensis WY96-3418] gi|134254126|gb|EBA53220.1| NADH dehydrogenase I, I subunit [Francisella tularensis subsp. holarctica 257] gi|151569674|gb|EDN35328.1| NADH dehydrogenase [Francisella tularensis subsp. tularensis FSC033] gi|157121894|gb|EDO66064.1| NADH dehydrogenase subunit I [Francisella tularensis subsp. holarctica FSC022] gi|187711905|gb|ACD30202.1| NADH dehydrogenase I, I subunit [Francisella tularensis subsp. mediasiatica FSC147] gi|254840056|gb|EET18492.1| NADH-quinone oxidoreductase subunit I [Francisella tularensis subsp. tularensis MA00-2987] gi|282158327|gb|ADA77718.1| NADH dehydrogenase subunit I [Francisella tularensis subsp. tularensis NE061598] Length = 162 Score = 164 bits (414), Expect = 5e-39, Method: Composition-based stats. Identities = 80/163 (49%), Positives = 103/163 (63%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 MR + L E + + ++FF K T+ YP EK S RFRG HALRRY NGE Sbjct: 1 MRNITNFLKTFLLWELLKGLKVTGKHFFTRKVTVQYPDEKTPISNRFRGLHALRRYENGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCE +CPA AITI S R DGTRRT Y++D+ KCI+CG C+E+CPVD+IVE Sbjct: 61 ERCIACKLCEVVCPALAITINSTER-EDGTRRTSSYEMDLFKCIFCGYCEESCPVDSIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R E K +LL GD++E++I + + D +R Sbjct: 120 TNILEYHFEERGENIMTKAKLLAIGDKYEAQIAADRLQDKDFR 162 >gi|42520793|ref|NP_966708.1| NADH dehydrogenase subunit I [Wolbachia endosymbiont of Drosophila melanogaster] gi|99034611|ref|ZP_01314569.1| hypothetical protein Wendoof_01000619 [Wolbachia endosymbiont of Drosophila willistoni TSC#14030-0811.24] gi|81652312|sp|Q73GH4|NUOI_WOLPM RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|42410533|gb|AAS14642.1| NADH dehydrogenase I, I subunit [Wolbachia endosymbiont of Drosophila melanogaster] Length = 169 Score = 164 bits (414), Expect = 5e-39, Method: Composition-based stats. Identities = 106/160 (66%), Positives = 121/160 (75%), Gaps = 1/160 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 + + + E + F + L+Y FK K T+ YP EKG SPRFRGEHALRRYPNGEER Sbjct: 10 MLKKLAWYWSFVELIKGFVITLKYMFKPKVTLRYPMEKGPLSPRFRGEHALRRYPNGEER 69 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCE ICPAQAI IE+ R DG+RRT RYDIDMIKCIYCGLCQEACPVDAIVEGP Sbjct: 70 CIACKLCEVICPAQAIVIEAEER-EDGSRRTTRYDIDMIKCIYCGLCQEACPVDAIVEGP 128 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPY 162 NFEFATETR+EL Y+KE+LL NG+ WE I + + PY Sbjct: 129 NFEFATETREELMYNKEKLLRNGEVWEDAIALRLKKNRPY 168 >gi|268597677|ref|ZP_06131844.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae FA19] gi|268599929|ref|ZP_06134096.1| NADH-ubiquinone oxidoreductase [Neisseria gonorrhoeae MS11] gi|268602263|ref|ZP_06136430.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae PID18] gi|268604529|ref|ZP_06138696.1| NADH-ubiquinone oxidoreductase [Neisseria gonorrhoeae PID1] gi|268682984|ref|ZP_06149846.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae PID332] gi|268687412|ref|ZP_06154274.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae SK-93-1035] gi|291042886|ref|ZP_06568627.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae DGI2] gi|293398104|ref|ZP_06642309.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae F62] gi|304389075|ref|ZP_07371119.1| NADH-quinone oxidoreductase subunit I [Neisseria meningitidis ATCC 13091] gi|268551465|gb|EEZ46484.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae FA19] gi|268584060|gb|EEZ48736.1| NADH-ubiquinone oxidoreductase [Neisseria gonorrhoeae MS11] gi|268586394|gb|EEZ51070.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae PID18] gi|268588660|gb|EEZ53336.1| NADH-ubiquinone oxidoreductase [Neisseria gonorrhoeae PID1] gi|268623268|gb|EEZ55668.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae PID332] gi|268627696|gb|EEZ60096.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae SK-93-1035] gi|291013320|gb|EFE05286.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae DGI2] gi|291611367|gb|EFF40437.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae F62] gi|304336948|gb|EFM03138.1| NADH-quinone oxidoreductase subunit I [Neisseria meningitidis ATCC 13091] Length = 164 Score = 164 bits (414), Expect = 5e-39, Method: Composition-based stats. Identities = 89/158 (56%), Positives = 105/158 (66%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 V L E V + L+ FF K TI +P EK S RFRG HA RRYPNGEERCIA Sbjct: 8 NLVKTFLLGELVKGMGVTLKNFFARKDTIYFPEEKTPQSVRFRGLHAQRRYPNGEERCIA 67 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEA+CPA AI IES R DGTRRT RYDID+ KCI+CG C+EACP DAIVE FE Sbjct: 68 CKLCEAVCPAMAINIESEER-EDGTRRTKRYDIDLTKCIFCGFCEEACPTDAIVETHIFE 126 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + E + +L+ K LL GD++E+EI + D+PYR Sbjct: 127 YHGEKKGDLHMTKPILLAIGDKYEAEIAKRKAADAPYR 164 >gi|58584728|ref|YP_198301.1| NADH dehydrogenase subunit I [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|75507969|sp|Q5GSG5|NUOI_WOLTR RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|58419044|gb|AAW71059.1| NADH:ubiquinone oxidoreductase chain I [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 160 Score = 163 bits (413), Expect = 6e-39, Method: Composition-based stats. Identities = 105/160 (65%), Positives = 118/160 (73%), Gaps = 1/160 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 + + + E + F + LRY FK K T+ YP EKG SPRFRGEHALRRY NGEER Sbjct: 1 MLKKLAWYWSFVELIKGFIITLRYAFKPKVTLKYPMEKGPLSPRFRGEHALRRYSNGEER 60 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCE ICPAQAI IE+ R DG+RRT RYDIDM KCIYCGLCQEACPVDAIVEGP Sbjct: 61 CIACKLCEVICPAQAIVIEAEER-EDGSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGP 119 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPY 162 NFEFATETR+EL Y+KE+LL NG+ WE I + D Y Sbjct: 120 NFEFATETREELMYNKEKLLRNGEIWEEAIALRLKKDVSY 159 >gi|94496472|ref|ZP_01303049.1| NADH-quinone oxidoreductase, chain I [Sphingomonas sp. SKA58] gi|94424218|gb|EAT09242.1| NADH-quinone oxidoreductase, chain I [Sphingomonas sp. SKA58] Length = 161 Score = 163 bits (413), Expect = 6e-39, Method: Composition-based stats. Identities = 115/158 (72%), Positives = 126/158 (79%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 V L EFV A L L+YFFK K TINYP+EK SPRFRGEHALRRYPNGEERCIA Sbjct: 5 YYVKSFTLWEFVKAHALTLKYFFKPKATINYPYEKNPISPRFRGEHALRRYPNGEERCIA 64 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEA+CPAQAITIE+ PR G+RRT RYDIDM KCIYCG CQEACPVDA+VEGPNFE Sbjct: 65 CKLCEAVCPAQAITIEAQPRDD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAVVEGPNFE 123 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FATETR+EL YDK +LL NGD+WE I N+ D+PYR Sbjct: 124 FATETREELIYDKAKLLENGDKWERAIAANLAADAPYR 161 >gi|319638825|ref|ZP_07993583.1| NADH-quinone oxidoreductase subunit I [Neisseria mucosa C102] gi|317399729|gb|EFV80392.1| NADH-quinone oxidoreductase subunit I [Neisseria mucosa C102] Length = 159 Score = 163 bits (413), Expect = 6e-39, Method: Composition-based stats. Identities = 89/158 (56%), Positives = 104/158 (65%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 V L E V + L+ FF K TI +P EK S RFRG HA RRYPNGEERCIA Sbjct: 3 NLVKTFLLGELVKGMGVTLKNFFARKDTIYFPEEKTPQSVRFRGLHAQRRYPNGEERCIA 62 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEA+CPA AI IES R DGTRRT RYDID+ KCI+CG C+EACP DAIVE FE Sbjct: 63 CKLCEAVCPAMAINIESEER-EDGTRRTKRYDIDLTKCIFCGFCEEACPTDAIVETHIFE 121 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + E + +L+ K LL GD++E EI + D+PYR Sbjct: 122 YHGEKKGDLHMTKPILLAIGDKYEPEIAKRKAADAPYR 159 >gi|291613546|ref|YP_003523703.1| NADH-quinone oxidoreductase, chain I [Sideroxydans lithotrophicus ES-1] gi|291583658|gb|ADE11316.1| NADH-quinone oxidoreductase, chain I [Sideroxydans lithotrophicus ES-1] Length = 162 Score = 163 bits (413), Expect = 6e-39, Method: Composition-based stats. Identities = 86/163 (52%), Positives = 105/163 (64%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M+ L E + + RYFF T+ YP EK S RFRG HA RRYPNGE Sbjct: 1 MKNLINFFKSFLLLELLKGMSVTGRYFFARHITVEYPEEKTPQSFRFRGLHAQRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCI CKLCEA+CPA AI IE R DGTRRT RYDID++KCI+CG C+E+CPVDAIVE Sbjct: 61 ERCIGCKLCEAVCPALAIKIEVAER-EDGTRRTTRYDIDLVKCIFCGFCEESCPVDAIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FE+ E+R +LYY K LL G+++E +I + D+ YR Sbjct: 120 TRVFEYHGESRGDLYYTKPMLLAMGEKYEEQIAMDRAADAKYR 162 >gi|241667723|ref|ZP_04755301.1| NADH dehydrogenase subunit I [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876267|ref|ZP_05248977.1| NADH-quinone oxidoreductase subunit I [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842288|gb|EET20702.1| NADH-quinone oxidoreductase subunit I [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 162 Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats. Identities = 80/163 (49%), Positives = 102/163 (62%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 MR L E + + ++FF K T+ YP EK S RFRG HALRRY NGE Sbjct: 1 MRNITSFFKTFLLWELLKGMRVTGKHFFTRKVTVQYPDEKTPISNRFRGLHALRRYENGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCE +CPA AITI S R DG+RRT Y+ID+ KCI+CG C+E+CPVD+IVE Sbjct: 61 ERCIACKLCEVVCPALAITINSTER-EDGSRRTSSYEIDLFKCIFCGYCEESCPVDSIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R E K +LL GD++E++I + + D +R Sbjct: 120 TNILEYHFEERGENIMTKAKLLAIGDKYEAQIAADRLQDKDFR 162 >gi|190571400|ref|YP_001975758.1| NADH dehydrogenase I, I subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|190357672|emb|CAQ55116.1| NADH dehydrogenase I, I subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] Length = 160 Score = 163 bits (413), Expect = 7e-39, Method: Composition-based stats. Identities = 105/160 (65%), Positives = 120/160 (75%), Gaps = 1/160 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 + + + E + F + L+Y FK K T+ YP EKG SPRFRGEHALRRYPNGEER Sbjct: 1 MLKKLAWYWSSVELIKGFVITLKYMFKPKVTLRYPMEKGPLSPRFRGEHALRRYPNGEER 60 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCE ICPAQAI IE+ R DG+RRT RYDIDM KCIYCGLCQEACPVDAIVEGP Sbjct: 61 CIACKLCEVICPAQAIVIEAEER-EDGSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGP 119 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPY 162 NFEFATETR+EL Y+KE+LL NG+ WE I + + PY Sbjct: 120 NFEFATETREELMYNKEKLLRNGEVWEEAIALRLKKNRPY 159 >gi|307182361|gb|EFN69628.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial [Camponotus floridanus] Length = 146 Score = 163 bits (412), Expect = 7e-39, Method: Composition-based stats. Identities = 105/147 (71%), Positives = 118/147 (80%), Gaps = 1/147 (0%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + L + F+ TINYPFEKG SPRFRGEHALRRYP+GEERCIACKLCEAICPAQ Sbjct: 1 MRGMGLIVSQIFREPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQ 60 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 AITIE+ R G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFEF++ET +E+ Y Sbjct: 61 AITIEAEERAD-GSRRTTRYDIDMSKCIYCGFCQEACPVDAIVEGPNFEFSSETHEEMLY 119 Query: 137 DKERLLNNGDRWESEIVRNIVTDSPYR 163 +KE+LLNNGD+WESEI NI D YR Sbjct: 120 NKEKLLNNGDKWESEIASNIHADHLYR 146 >gi|294788068|ref|ZP_06753312.1| NADH dehydrogenase (ubiquinone), I subunit [Simonsiella muelleri ATCC 29453] gi|294484361|gb|EFG32044.1| NADH dehydrogenase (ubiquinone), I subunit [Simonsiella muelleri ATCC 29453] Length = 159 Score = 163 bits (412), Expect = 7e-39, Method: Composition-based stats. Identities = 90/158 (56%), Positives = 106/158 (67%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 L E V + L+ FF K TI +P EK S RFRG HA RRYPNGEERCIA Sbjct: 3 NFFKTFLLGELVKGMGVTLKNFFVRKDTIYFPEEKTPQSVRFRGLHAQRRYPNGEERCIA 62 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEA+CPA AI IES R DGTRRT RYDID+ KCI+CG C+EACPVDAIVE FE Sbjct: 63 CKLCEAVCPAMAINIESEER-EDGTRRTTRYDIDLTKCIFCGFCEEACPVDAIVETHIFE 121 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + E R +L+ K LL GD++E+EI + + D+PYR Sbjct: 122 YHGEKRGDLHMTKPILLAIGDKYEAEIAKRKMADAPYR 159 >gi|239999835|ref|ZP_04719759.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae 35/02] gi|317165124|gb|ADV08665.1| NADH dehydrogenase subunit I [Neisseria gonorrhoeae TCDC-NG08107] Length = 159 Score = 163 bits (412), Expect = 8e-39, Method: Composition-based stats. Identities = 88/158 (55%), Positives = 104/158 (65%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 V L E V + L+ FF K TI +P EK S RFRG HA R YPNGEERCIA Sbjct: 3 NLVKTFLLGELVKGMGVTLKNFFARKDTIYFPEEKTPQSVRFRGLHAQRCYPNGEERCIA 62 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEA+CPA AI IES R DGTRRT RYDID+ KCI+CG C+EACP DAIVE FE Sbjct: 63 CKLCEAVCPAMAINIESEER-EDGTRRTKRYDIDLTKCIFCGFCEEACPTDAIVETHIFE 121 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + E + +L+ K LL GD++E+EI + D+PYR Sbjct: 122 YHGEKKGDLHMTKPILLAIGDKYEAEIAKRKAADAPYR 159 >gi|78485170|ref|YP_391095.1| NADH dehydrogenase subunit I [Thiomicrospira crunogena XCL-2] gi|115502545|sp|Q31HF2|NUOI_THICR RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|78363456|gb|ABB41421.1| NADH dehydrogenase I chain I [Thiomicrospira crunogena XCL-2] Length = 163 Score = 163 bits (412), Expect = 8e-39, Method: Composition-based stats. Identities = 89/160 (55%), Positives = 103/160 (64%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + V L E + +Y FK K T+ YP EK SPRFRG HALRRY NGEERC Sbjct: 5 IKHQVKTFGLIELFKGLAVTGKYLFKKKITVRYPEEKTPLSPRFRGHHALRRYENGEERC 64 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEA+CPA AITIES R GTRRT +YDIDM KCIYCG C+EACPVDA+VE Sbjct: 65 IACKLCEAVCPANAITIESEERDD-GTRRTTQYDIDMFKCIYCGFCEEACPVDAVVETRV 123 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FE+ R KE+LL GD+ ES+I + D+ YR Sbjct: 124 FEYEFHERGTHIMTKEQLLAFGDKHESQIAADRAADAKYR 163 >gi|268595645|ref|ZP_06129812.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae 35/02] gi|268549034|gb|EEZ44452.1| NADH-quinone oxidoreductase subunit I [Neisseria gonorrhoeae 35/02] Length = 164 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 88/158 (55%), Positives = 104/158 (65%), Gaps = 1/158 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 V L E V + L+ FF K TI +P EK S RFRG HA R YPNGEERCIA Sbjct: 8 NLVKTFLLGELVKGMGVTLKNFFARKDTIYFPEEKTPQSVRFRGLHAQRCYPNGEERCIA 67 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEA+CPA AI IES R DGTRRT RYDID+ KCI+CG C+EACP DAIVE FE Sbjct: 68 CKLCEAVCPAMAINIESEER-EDGTRRTKRYDIDLTKCIFCGFCEEACPTDAIVETHIFE 126 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + E + +L+ K LL GD++E+EI + D+PYR Sbjct: 127 YHGEKKGDLHMTKPILLAIGDKYEAEIAKRKAADAPYR 164 >gi|322706310|gb|EFY97891.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Metarhizium anisopliae ARSEF 23] Length = 247 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 97/189 (51%), Positives = 118/189 (62%), Gaps = 28/189 (14%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAK------TTINYPFEKGSTSPRFRGEHALRR 55 + + L E ++ + FF+ T++ +G SPRFRGEHALRR Sbjct: 60 KTLDRLGKYFLLTEMARGMYVLMEQFFRPPTTHLDMATVSIDTTQGPISPRFRGEHALRR 119 Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 YP+GEERCIACKLCEAICPAQAITIE+ R G+RRT RYDIDM KCIYCG CQE+CPV Sbjct: 120 YPSGEERCIACKLCEAICPAQAITIEAEERAD-GSRRTTRYDIDMTKCIYCGFCQESCPV 178 Query: 116 DAIVEGPNFEFATETRQELYYDK---------------------ERLLNNGDRWESEIVR 154 DAIVE PN E+ATETR+EL Y+K E+LL+NGD+WE E+ Sbjct: 179 DAIVESPNAEYATETREELLYNKGRLNHSAHASRVASLLILFAAEKLLSNGDKWEPELAA 238 Query: 155 NIVTDSPYR 163 I D+PYR Sbjct: 239 AIRADAPYR 247 >gi|198284338|ref|YP_002220659.1| NADH dehydrogenase subunit I [Acidithiobacillus ferrooxidans ATCC 53993] gi|218668010|ref|YP_002427000.1| NADH-quinone oxidoreductase, I subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|198248859|gb|ACH84452.1| NADH-quinone oxidoreductase, chain I [Acidithiobacillus ferrooxidans ATCC 53993] gi|218520223|gb|ACK80809.1| NADH-quinone oxidoreductase, I subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 163 Score = 162 bits (411), Expect = 1e-38, Method: Composition-based stats. Identities = 91/159 (57%), Positives = 107/159 (67%), Gaps = 1/159 (0%) Query: 5 RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64 R + FL E + L RYFF K T+ YP E+ SPRFRG HALRRY NGEERCI Sbjct: 6 RQWFNTFFLTEMLRGMQLTGRYFFARKITVQYPEEQTPQSPRFRGLHALRRYANGEERCI 65 Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 ACKLCEA+CPA AITIES R GTRRT RYDID+ KCI+CGLC+E+CPVD+IVE Sbjct: 66 ACKLCEAVCPALAITIESDVRSD-GTRRTTRYDIDLSKCIFCGLCEESCPVDSIVESRVL 124 Query: 125 EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + E R +L Y K+ LL NGDR E+E+ + D YR Sbjct: 125 SYHGEIRGDLIYTKDMLLANGDRLEAELAADRDADRAYR 163 >gi|237746743|ref|ZP_04577223.1| NADH-quinone oxidoreductase subunit I [Oxalobacter formigenes HOxBLS] gi|229378094|gb|EEO28185.1| NADH-quinone oxidoreductase subunit I [Oxalobacter formigenes HOxBLS] Length = 162 Score = 162 bits (410), Expect = 1e-38, Method: Composition-based stats. Identities = 86/163 (52%), Positives = 107/163 (65%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M R L E + L ++ F+ K T+ YP EK SPRFRG HAL R NGE Sbjct: 1 MSAIRHFFRTFALTELIQGLALTMKVMFRRKATVRYPEEKTPLSPRFRGMHALMRDENGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCI CKLCEA+CPA+AI IE+G R DG+RRT RY+ID KCI+CGLC+EACPVDAIVE Sbjct: 61 ERCIGCKLCEAVCPAKAILIETGER-EDGSRRTTRYEIDQSKCIFCGLCEEACPVDAIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 P FE++ + + +L + KE LL+ G +E EI D+PYR Sbjct: 120 IPMFEYSADEKGDLVFGKEVLLSVGKTYEREIREAKEADAPYR 162 >gi|319779206|ref|YP_004130119.1| NADH-ubiquinone oxidoreductase chain I [Taylorella equigenitalis MCE9] gi|317109230|gb|ADU91976.1| NADH-ubiquinone oxidoreductase chain I [Taylorella equigenitalis MCE9] Length = 161 Score = 162 bits (410), Expect = 1e-38, Method: Composition-based stats. Identities = 88/162 (54%), Positives = 108/162 (66%), Gaps = 1/162 (0%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 F + + LFL E + + +YFFK K T+ YP+EK SPRFRG HA RRY NGEE Sbjct: 1 MSFAKSFAGLFLTELLKGMAVTGKYFFKPKFTLRYPYEKTPMSPRFRGLHAQRRYENGEE 60 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLCEA+CPA AITIES R DG R+T RYDID+ KCI+CG C+E+CPV+AIVE Sbjct: 61 RCIACKLCEAVCPAMAITIESHER-EDGARKTSRYDIDLTKCIFCGFCEESCPVEAIVET 119 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E +LY+ K+ LL GD++E EI D YR Sbjct: 120 HIHEYHGEKASDLYFTKDMLLAIGDKYEPEIAARRAIDGKYR 161 >gi|11466187|ref|NP_066510.1| NADH dehydrogenase subunit 8 [Naegleria gruberi] gi|10444222|gb|AAG17788.1|AF288092_13 NADH dehydrogenase subunit 8 [Naegleria gruberi] Length = 159 Score = 161 bits (408), Expect = 2e-38, Method: Composition-based stats. Identities = 99/160 (61%), Positives = 120/160 (75%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + +L+L E + F+ L+ F K TINYPFEKG+ SPRFRGEHALRRY NGEERC Sbjct: 1 MFSSFQYLYLSELMRGLFVALKNLFSKKVTINYPFEKGAISPRFRGEHALRRYSNGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCE +CPA AITI+S + + G+R+T RYDIDM KCIYCGLCQEACPVDAIVE N Sbjct: 61 IACKLCEVVCPALAITIDSAQQLN-GSRQTTRYDIDMTKCIYCGLCQEACPVDAIVESFN 119 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FE++T T EL YDK++LL NGD++E EI N+ + YR Sbjct: 120 FEYSTFTHDELLYDKKKLLANGDKFEIEIYLNLKKEILYR 159 >gi|224009321|ref|XP_002293619.1| NADH dehydrogenase [Thalassiosira pseudonana CCMP1335] gi|220971019|gb|EED89355.1| NADH dehydrogenase [Thalassiosira pseudonana CCMP1335] Length = 150 Score = 161 bits (406), Expect = 5e-38, Method: Composition-based stats. Identities = 105/151 (69%), Positives = 122/151 (80%), Gaps = 1/151 (0%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + E AF+L K K TINYP+EKG SPRFRGEHALRRYP+G+ERCIACKLCEA Sbjct: 1 MTEIWRAFWLSGEVALKPKVTINYPYEKGYLSPRFRGEHALRRYPSGDERCIACKLCEAA 60 Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 CPAQAITI++ R DG RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFEFATET + Sbjct: 61 CPAQAITIDAEER-EDGARRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHE 119 Query: 133 ELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 EL YDKE+LL+NGD+WE +I +N++++ YR Sbjct: 120 ELLYDKEKLLSNGDKWEKQIAKNLLSEHLYR 150 >gi|260223136|emb|CBA33398.1| NADH-quinone oxidoreductase subunit I [Curvibacter putative symbiont of Hydra magnipapillata] Length = 146 Score = 160 bits (405), Expect = 6e-38, Method: Composition-based stats. Identities = 87/147 (59%), Positives = 104/147 (70%), Gaps = 1/147 (0%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + L RY F+ K T+ +P EK SPRFRG HALRRY NGEERCIACKLCEA+CPA Sbjct: 1 MKGMALTGRYLFRRKVTVQFPEEKTPLSPRFRGLHALRRYENGEERCIACKLCEAVCPAM 60 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 AITIES R G+RRT RYDID+ KCI+CG C+E+CPVD+IVE E+ E R +LY+ Sbjct: 61 AITIESDVRDD-GSRRTTRYDIDLTKCIFCGFCEESCPVDSIVETHILEYHGEKRGDLYF 119 Query: 137 DKERLLNNGDRWESEIVRNIVTDSPYR 163 K+ LL GDR+ESEI N D+ YR Sbjct: 120 TKDMLLAVGDRYESEIAANKQADAKYR 146 >gi|170091616|ref|XP_001877030.1| predicted protein [Laccaria bicolor S238N-H82] gi|164648523|gb|EDR12766.1| predicted protein [Laccaria bicolor S238N-H82] Length = 143 Score = 160 bits (404), Expect = 8e-38, Method: Composition-based stats. Identities = 101/144 (70%), Positives = 114/144 (79%), Gaps = 1/144 (0%) Query: 20 FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79 ++ + FF+ TI YPFEKG SPRFRGEHALRRYP+GEERCIACKLCEAICPAQAIT Sbjct: 1 MWIVMENFFRPPYTIMYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAIT 60 Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139 IES R G+R+T +YDIDM KCIYCG CQEACPVDAIVE N EF+TETR+EL Y+KE Sbjct: 61 IESEARLD-GSRKTTKYDIDMTKCIYCGFCQEACPVDAIVETQNQEFSTETREELLYNKE 119 Query: 140 RLLNNGDRWESEIVRNIVTDSPYR 163 +LL NGDR ESEI N+ D YR Sbjct: 120 KLLANGDRAESEIAANLHADHVYR 143 >gi|319787435|ref|YP_004146910.1| NADH-quinone oxidoreductase, chain I [Pseudoxanthomonas suwonensis 11-1] gi|317465947|gb|ADV27679.1| NADH-quinone oxidoreductase, chain I [Pseudoxanthomonas suwonensis 11-1] Length = 162 Score = 159 bits (403), Expect = 9e-38, Method: Composition-based stats. Identities = 93/163 (57%), Positives = 105/163 (64%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M L L E V L RY F+ K T+ YP EK SPRFRG HALRRYPNGE Sbjct: 1 MNKVVHYFKSLLLWELVKGLALTFRYLFRPKYTMMYPMEKFPQSPRFRGLHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITI+S R DGTRRT RYDID+ KCIYCG C+E+CPVD+IVE Sbjct: 61 ERCIACKLCEAVCPALAITIDSA-RREDGTRRTTRYDIDLFKCIYCGFCEESCPVDSIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R E K +LL GDR E+EI D+ YR Sbjct: 120 THVMEYHFERRGENIVTKPQLLALGDRLEAEIAERRAADAAYR 162 >gi|89900294|ref|YP_522765.1| NADH dehydrogenase subunit I [Rhodoferax ferrireducens T118] gi|115502541|sp|Q21YB9|NUOI_RHOFD RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|89345031|gb|ABD69234.1| NADH-quinone oxidoreductase, chain I [Rhodoferax ferrireducens T118] Length = 177 Score = 159 bits (403), Expect = 9e-38, Method: Composition-based stats. Identities = 88/160 (55%), Positives = 108/160 (67%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + +S L E L +Y F++K T+ YP EK SPRFRG HALRRY NGEERC Sbjct: 19 LKDFLSSFMLSELFKGLALTGKYAFRSKITLEYPEEKTPLSPRFRGLHALRRYENGEERC 78 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPA AITIES R G+RRT RYDID+ KCI+CG C+E+CPVD+IVE Sbjct: 79 IACKLCEAICPAMAITIESEVRAD-GSRRTTRYDIDLNKCIFCGFCEESCPVDSIVETSI 137 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E+R +LY+ K+ LL GDR+E +I D+ YR Sbjct: 138 LEYHGESRSDLYFTKDMLLAVGDRYEPQIAAARAADAKYR 177 >gi|329909995|ref|ZP_08275180.1| NADH-ubiquinone oxidoreductase chain I [Oxalobacteraceae bacterium IMCC9480] gi|327546332|gb|EGF31351.1| NADH-ubiquinone oxidoreductase chain I [Oxalobacteraceae bacterium IMCC9480] Length = 162 Score = 159 bits (403), Expect = 9e-38, Method: Composition-based stats. Identities = 93/163 (57%), Positives = 110/163 (67%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + S L L+E L RY F K T+ +P EK SPRFRG HALRRYPNGE Sbjct: 1 MEAIKDFFSSLMLRELFKGMALTGRYMFARKITVQFPEEKTPQSPRFRGLHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIES R G+RRT RYDID+ KCI+CG C+E+CPVD+IVE Sbjct: 61 ERCIACKLCEAVCPAMAITIESEQRDD-GSRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +LYY KE LL GDR+E++I D+PYR Sbjct: 120 TSILEYHGEKRGDLYYTKEMLLAVGDRYENDIAAARAADAPYR 162 >gi|153874620|ref|ZP_02002769.1| NADH-quinone oxidoreductase, chain I [Beggiatoa sp. PS] gi|152068913|gb|EDN67228.1| NADH-quinone oxidoreductase, chain I [Beggiatoa sp. PS] Length = 150 Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats. Identities = 89/151 (58%), Positives = 107/151 (70%), Gaps = 1/151 (0%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + E + L RY FK K TI YP EK S RFRG HALRRYPNGEERCIACKLCEA+ Sbjct: 1 MWELMKGMNLTGRYLFKRKITIQYPEEKTPMSHRFRGHHALRRYPNGEERCIACKLCEAV 60 Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 CPA AITIE+ PR DGTRRT RYDID+ KCI+CG C+E+CPVD+IVE FE+ E R Sbjct: 61 CPALAITIEAAPR-EDGTRRTTRYDIDLTKCIFCGYCEESCPVDSIVETRFFEYHGEQRG 119 Query: 133 ELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 +L K++LL GDR+E ++ + D+ YR Sbjct: 120 DLLMTKDKLLAMGDRFEKQLAADRSLDAQYR 150 >gi|160900604|ref|YP_001566186.1| NADH dehydrogenase subunit I [Delftia acidovorans SPH-1] gi|160366188|gb|ABX37801.1| NADH-quinone oxidoreductase, chain I [Delftia acidovorans SPH-1] Length = 169 Score = 159 bits (402), Expect = 1e-37, Method: Composition-based stats. Identities = 88/160 (55%), Positives = 106/160 (66%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + + L E L RY F+ K T+ +P EK SPRFRG HALRRY NGEERC Sbjct: 11 IKDFLKSFMLWELAKGMALTGRYTFRRKVTVQFPEEKTPLSPRFRGLHALRRYDNGEERC 70 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEA+CPA AITIES R G+RRT RYDID+ KCI+CG C+E+CPVD+IVE Sbjct: 71 IACKLCEAVCPAMAITIESDVRDD-GSRRTTRYDIDLTKCIFCGFCEESCPVDSIVETHI 129 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FE+ E R +LY+ K+ LL GDR+E EI D+ YR Sbjct: 130 FEYHGEKRGDLYFTKDMLLAVGDRYEPEIAAAKAADAKYR 169 >gi|237748883|ref|ZP_04579363.1| NADH-quinone oxidoreductase subunit I [Oxalobacter formigenes OXCC13] gi|229380245|gb|EEO30336.1| NADH-quinone oxidoreductase subunit I [Oxalobacter formigenes OXCC13] Length = 162 Score = 159 bits (401), Expect = 1e-37, Method: Composition-based stats. Identities = 86/163 (52%), Positives = 106/163 (65%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M+ + L E + L LR F+ K T+ YP EK SPRFRG HAL R NGE Sbjct: 1 MKTIKHFFKTFSLIELIQGMALTLRVMFRRKATVRYPEEKTPLSPRFRGMHALMRDENGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E+CI CKLCE++CPA+AI IE+ R DGTRRT RYDID KCI+CGLC+EACPVDAIVE Sbjct: 61 EKCIGCKLCESVCPAKAILIETEER-EDGTRRTTRYDIDQSKCIFCGLCEEACPVDAIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 P FE++ + + +L + KE LL GD ++ EI D PYR Sbjct: 120 IPMFEYSADGKNDLLFSKEVLLKVGDTYKEEIKEAKDADEPYR 162 >gi|171058193|ref|YP_001790542.1| NADH dehydrogenase subunit I [Leptothrix cholodnii SP-6] gi|170775638|gb|ACB33777.1| NADH-quinone oxidoreductase, chain I [Leptothrix cholodnii SP-6] Length = 165 Score = 159 bits (401), Expect = 2e-37, Method: Composition-based stats. Identities = 90/159 (56%), Positives = 109/159 (68%), Gaps = 1/159 (0%) Query: 5 RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64 + VS L E + L R+FF+ T+ +P EK SPRFRG HALRRY NGEERCI Sbjct: 8 KDFVSSFMLLELLKGLKLTGRHFFQRTVTVQFPEEKTPLSPRFRGLHALRRYENGEERCI 67 Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 ACKLCEA+CPA AITIES R G+RRT RYDID+ KCI+CG C+E+CPVD+IVE F Sbjct: 68 ACKLCEAVCPAMAITIESDVRAD-GSRRTTRYDIDLTKCIFCGFCEESCPVDSIVETHIF 126 Query: 125 EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +LY+ K+ LL GDR+E EI N D+ YR Sbjct: 127 EYHGEKRGDLYFTKDMLLAVGDRYEQEIAANKEADAKYR 165 >gi|300311103|ref|YP_003775195.1| NADH dehydrogenase I subunit I [Herbaspirillum seropedicae SmR1] gi|300073888|gb|ADJ63287.1| NADH dehydrogenase I (Chain I) oxidoreductase protein [Herbaspirillum seropedicae SmR1] Length = 162 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 94/163 (57%), Positives = 109/163 (66%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + L L+E L RY FK K T+ +P EK SPRFRG HALRRYPNGE Sbjct: 1 MEAIKDFFGSLMLRELFKGLALTGRYLFKRKITVQFPEEKTPMSPRFRGLHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIES R GTRRT RYDID+ KCI+CG C+E+CPVD+IVE Sbjct: 61 ERCIACKLCEAVCPAMAITIESEQRAD-GTRRTSRYDIDLTKCIFCGFCEESCPVDSIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +LYY KE LL GDR+E+EI D+ YR Sbjct: 120 THILEYHGEKRGDLYYTKEMLLAVGDRYENEIAAARAADAAYR 162 >gi|328860549|gb|EGG09655.1| hypothetical protein MELLADRAFT_29188 [Melampsora larici-populina 98AG31] Length = 150 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 97/148 (65%), Positives = 108/148 (72%), Gaps = 1/148 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 FL E ++ L F+ TI YPFEKG SPRFRGEHALRRY +GEERC Sbjct: 3 LDKAAKLFFLTEIARGMWVVLEQMFRPPFTIMYPFEKGPVSPRFRGEHALRRYASGEERC 62 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAITIES R G RRT RYD+DM KCIYCG CQEACPVDAIVE N Sbjct: 63 IACKLCEAICPAQAITIESETRLD-GARRTTRYDLDMTKCIYCGFCQEACPVDAIVESQN 121 Query: 124 FEFATETRQELYYDKERLLNNGDRWESE 151 E++TETR+EL Y+KE+LL NGDR E+E Sbjct: 122 TEYSTETREELLYNKEKLLANGDRMEAE 149 >gi|134095023|ref|YP_001100098.1| NADH dehydrogenase subunit I [Herminiimonas arsenicoxydans] gi|156633522|sp|A4G636|NUOI_HERAR RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|133738926|emb|CAL61973.1| NADH-quinone oxidoreductase subunit I (NADH dehydrogenase I subunit I) (NDH-1 subunit I) [Herminiimonas arsenicoxydans] Length = 162 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 93/163 (57%), Positives = 110/163 (67%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + L L+E + L RY F K T+ +P EK SPRFRG HALRRYPNGE Sbjct: 1 MEAIKDFFGSLMLREMLKGMALTGRYMFSRKITVQFPEEKTPQSPRFRGLHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIES R G+RRT RYDID+ KCI+CG C+E+CPVD+IVE Sbjct: 61 ERCIACKLCEAVCPAMAITIESEQRDD-GSRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FE+ E R +LYY KE LL GDR+E+EI D+ YR Sbjct: 120 THIFEYHGEKRGDLYYTKEMLLAVGDRYETEIAAARTADAAYR 162 >gi|73540672|ref|YP_295192.1| NADH dehydrogenase subunit I [Ralstonia eutropha JMP134] gi|115502538|sp|Q473T5|NUOI_RALEJ RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|72118085|gb|AAZ60348.1| NADH-quinone oxidoreductase, chain I [Ralstonia eutropha JMP134] Length = 163 Score = 158 bits (400), Expect = 2e-37, Method: Composition-based stats. Identities = 92/160 (57%), Positives = 108/160 (67%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + + L LKE L RY F K T+ +P EK SPRFRG HALRRYPNGEERC Sbjct: 5 IKDFFNSLLLKELFKGMALTGRYLFARKVTVQFPEEKTPISPRFRGLHALRRYPNGEERC 64 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEA+CPA AITIES R GTRRT RYDID+ KCI+CG C+EACPVDA+VE P Sbjct: 65 IACKLCEAVCPALAITIESDVRAD-GTRRTTRYDIDLTKCIFCGFCEEACPVDAVVETPI 123 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +LY+ K+ LL GDR+E +I D+ YR Sbjct: 124 LEYHGEKRGDLYFTKDMLLAVGDRYEPQIAAAKAADAKYR 163 >gi|113867078|ref|YP_725567.1| NADH dehydrogenase subunit I [Ralstonia eutropha H16] gi|194289167|ref|YP_002005074.1| NADH dehydrogenase subunit i [Cupriavidus taiwanensis LMG 19424] gi|123033156|sp|Q0KCS2|NUOI_RALEH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|226737389|sp|B3R3X5|NUOI_CUPTR RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|113525854|emb|CAJ92199.1| NADH dehydrogenase chain I [Ralstonia eutropha H16] gi|193223002|emb|CAQ69007.1| NADH:ubiquinone oxidoreductase complex I, chain I [Cupriavidus taiwanensis LMG 19424] Length = 163 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 92/160 (57%), Positives = 107/160 (66%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + + L LKE L RY F K T+ +P EK SPRFRG HALRRYPNGEERC Sbjct: 5 IKDFFNSLLLKELFKGMALTGRYLFARKITVQFPEEKTPISPRFRGLHALRRYPNGEERC 64 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEA+CPA AITIES R GTRRT RYDID+ KCI+CG C+EACPVDAIVE Sbjct: 65 IACKLCEAVCPALAITIESDARAD-GTRRTTRYDIDLTKCIFCGFCEEACPVDAIVETQI 123 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +LY+ K+ LL GDR+E +I D+ YR Sbjct: 124 LEYHGEKRGDLYFTKDMLLAVGDRYEPQIAAAKAADAKYR 163 >gi|222110094|ref|YP_002552358.1| NADH dehydrogenase subunit I [Acidovorax ebreus TPSY] gi|221729538|gb|ACM32358.1| NADH-quinone oxidoreductase, chain I [Acidovorax ebreus TPSY] Length = 170 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 89/160 (55%), Positives = 106/160 (66%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + L E L RY F+ K T+ +P EK SPRFRG HALRRY NGEERC Sbjct: 12 IKDFFKSFMLWELAKGMALTGRYTFRRKVTVQFPEEKTPLSPRFRGLHALRRYDNGEERC 71 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEA+CPA AITIES R DG+RRT RYDID+ KCI+CG C+E+CPVD+IVE Sbjct: 72 IACKLCEAVCPALAITIESDVR-EDGSRRTTRYDIDLTKCIFCGFCEESCPVDSIVETQI 130 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FE+ E R +LY+ K+ LL GDR+E EI D+ YR Sbjct: 131 FEYHGEKRGDLYFTKDMLLAVGDRYEPEIAAAKAADAKYR 170 >gi|254797156|ref|YP_003081994.1| NADH-quinone oxidoreductase subunit i [Neorickettsia risticii str. Illinois] gi|254590388|gb|ACT69750.1| NADH-quinone oxidoreductase subunit i [Neorickettsia risticii str. Illinois] Length = 160 Score = 158 bits (399), Expect = 3e-37, Method: Composition-based stats. Identities = 102/156 (65%), Positives = 117/156 (75%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + + L F F LRYFF K TI YP EKG S RFRGEHALRRY NGEERC Sbjct: 1 MFKFLRQMQLTRFFVGFRTVLRYFFAPKVTIKYPQEKGPISLRFRGEHALRRYKNGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCE ICPAQAITIE+ PR DG+RRT RYDIDM KCIYCG CQEACPVDAIVEGPN Sbjct: 61 IACKLCEVICPAQAITIEAAPRESDGSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPN 120 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 FEFA E R++L Y+KE+LL+NG +WES +++ + + Sbjct: 121 FEFARENREDLLYNKEKLLDNGSKWESALIKMLNKN 156 >gi|33597903|ref|NP_885546.1| NADH dehydrogenase subunit I [Bordetella parapertussis 12822] gi|33574332|emb|CAE38668.1| NADH-ubiquinone oxidoreductase, chain I [Bordetella parapertussis] Length = 147 Score = 157 bits (398), Expect = 3e-37, Method: Composition-based stats. Identities = 91/148 (61%), Positives = 106/148 (71%), Gaps = 1/148 (0%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 L +YFFK K T+ YP EK TS RFRG HALRRYPNGEERCIACKLCEA+CPA Sbjct: 1 MFKGLRLTGKYFFKRKVTLRYPMEKTPTSARFRGLHALRRYPNGEERCIACKLCEAVCPA 60 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 AITIES R GTRRT RYDID+ KCI+CG C+E+CPVD+IVE E+ E R +LY Sbjct: 61 LAITIESEQRDD-GTRRTTRYDIDLTKCIFCGFCEESCPVDSIVETHIHEYHGEKRGDLY 119 Query: 136 YDKERLLNNGDRWESEIVRNIVTDSPYR 163 + K+ LL GDR+E+EI R D+PYR Sbjct: 120 FTKDMLLAVGDRYEAEIARRRAEDAPYR 147 >gi|94309880|ref|YP_583090.1| NADH dehydrogenase subunit I [Cupriavidus metallidurans CH34] gi|115502539|sp|Q1LPV5|NUOI_RALME RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|93353732|gb|ABF07821.1| NADH:ubiquinone oxidoreductase, chain I [Cupriavidus metallidurans CH34] Length = 163 Score = 157 bits (397), Expect = 4e-37, Method: Composition-based stats. Identities = 91/160 (56%), Positives = 107/160 (66%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + + L LKE L RY F K T+ +P EK SPRFRG HALRRYPNGEERC Sbjct: 5 IKDFFNSLLLKELFKGMALTGRYLFARKITVQFPEEKTPMSPRFRGLHALRRYPNGEERC 64 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEA+CPA AI+IES R GTRRT RYDID+ KCI+CG C+EACPVDAIVE Sbjct: 65 IACKLCEAVCPALAISIESDVRND-GTRRTTRYDIDLTKCIFCGFCEEACPVDAIVETHI 123 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +LY+ K+ LL GDR+E +I D+ YR Sbjct: 124 LEYHGEKRGDLYFTKDMLLAVGDRYEPQIAAAKAADAKYR 163 >gi|241763296|ref|ZP_04761353.1| NADH-quinone oxidoreductase, chain I [Acidovorax delafieldii 2AN] gi|241367571|gb|EER61858.1| NADH-quinone oxidoreductase, chain I [Acidovorax delafieldii 2AN] Length = 169 Score = 157 bits (396), Expect = 5e-37, Method: Composition-based stats. Identities = 88/160 (55%), Positives = 105/160 (65%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + L E V L RY F+ K T+ +P EK SPRFRG HALRRY NGEERC Sbjct: 11 LKDFFKSFMLVELVKGMALTGRYAFRRKVTVQFPEEKTPLSPRFRGLHALRRYDNGEERC 70 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEA+CPA AITIES R G+RRT RYDID+ KCI+CG C+E+CPVD+IVE Sbjct: 71 IACKLCEAVCPAMAITIESDVRAD-GSRRTTRYDIDLTKCIFCGFCEESCPVDSIVETHI 129 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +LY+ K+ LL GDR+E EI D+ YR Sbjct: 130 LEYHGEKRGDLYFTKDMLLAVGDRYEGEIAAAKAADAKYR 169 >gi|152980715|ref|YP_001353160.1| NADH dehydrogenase subunit I [Janthinobacterium sp. Marseille] gi|151280792|gb|ABR89202.1| NADH dehydrogenase I chain I [Janthinobacterium sp. Marseille] Length = 162 Score = 157 bits (396), Expect = 5e-37, Method: Composition-based stats. Identities = 94/163 (57%), Positives = 108/163 (66%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + L L+E L RY F K T+ +P EK SPRFRG HALRRYPNGE Sbjct: 1 MEAIKDFFGSLMLRELFKGLALTGRYMFARKITVQFPEEKTPQSPRFRGLHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIES R DGTRRT RYDID+ KCI+CG C+E+CPVD+IVE Sbjct: 61 ERCIACKLCEAVCPAMAITIESDQR-EDGTRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +LYY KE LL GDR+E EI D+ YR Sbjct: 120 THILEYHGEKRGDLYYTKEMLLAVGDRYEPEIAAARTADAAYR 162 >gi|83719559|ref|YP_441622.1| NADH dehydrogenase subunit I [Burkholderia thailandensis E264] gi|167580430|ref|ZP_02373304.1| NADH dehydrogenase subunit I [Burkholderia thailandensis TXDOH] gi|167618539|ref|ZP_02387170.1| NADH dehydrogenase subunit I [Burkholderia thailandensis Bt4] gi|257139682|ref|ZP_05587944.1| NADH dehydrogenase subunit I [Burkholderia thailandensis E264] gi|115502522|sp|Q2SZM7|NUOI_BURTA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|83653384|gb|ABC37447.1| NADH dehydrogenase I, I subunit [Burkholderia thailandensis E264] Length = 162 Score = 157 bits (396), Expect = 6e-37, Method: Composition-based stats. Identities = 91/163 (55%), Positives = 107/163 (65%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + FL E + L RY FK K T+ +P EK SPRFRG HALRRY NGE Sbjct: 1 MTAIQQFFKTFFLTELLKGLALTGRYTFKRKFTVQFPEEKTPISPRFRGLHALRRYENGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIES R + TRRT RYDID+ KCI+CG C+E+CPVD+IVE Sbjct: 61 ERCIACKLCEAVCPAMAITIESETRADN-TRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +LY+ KE LL GDR+E EI D+ YR Sbjct: 120 TQILEYHGEKRGDLYFTKEMLLAVGDRYEKEIAAAKAADARYR 162 >gi|167562185|ref|ZP_02355101.1| NADH dehydrogenase subunit I [Burkholderia oklahomensis EO147] gi|167569430|ref|ZP_02362304.1| NADH dehydrogenase subunit I [Burkholderia oklahomensis C6786] Length = 162 Score = 157 bits (396), Expect = 6e-37, Method: Composition-based stats. Identities = 91/163 (55%), Positives = 107/163 (65%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + FL E + L RY FK K T+ +P EK SPRFRG HALRRY NGE Sbjct: 1 MTAIQQFFKTFFLTELLKGLALTGRYTFKRKFTVQFPEEKTPISPRFRGLHALRRYENGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIES R + TRRT RYDID+ KCI+CG C+E+CPVD+IVE Sbjct: 61 ERCIACKLCEAVCPALAITIESETRADN-TRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +LY+ KE LL GDR+E EI D+ YR Sbjct: 120 TQILEYHGEKRGDLYFTKEMLLAVGDRYEKEIAAAKAADARYR 162 >gi|78067038|ref|YP_369807.1| NADH dehydrogenase subunit I [Burkholderia sp. 383] gi|115502521|sp|Q39EF3|NUOI_BURS3 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|77967783|gb|ABB09163.1| NADH dehydrogenase subunit I [Burkholderia sp. 383] Length = 162 Score = 157 bits (396), Expect = 6e-37, Method: Composition-based stats. Identities = 91/163 (55%), Positives = 108/163 (66%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + FL E + L RY FK K T+ +P EK SPRFRG HALRRY NGE Sbjct: 1 MSAIQHFFKTFFLTELLQGLALTGRYTFKRKVTVQFPEEKTPISPRFRGLHALRRYENGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIES R + TRRT RYDID+ KCI+CG C+E+CPVD+IVE Sbjct: 61 ERCIACKLCEAVCPAMAITIESETRADN-TRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +LY+ KE LL GDR+E +I D+PYR Sbjct: 120 TQILEYHGEKRGDLYFTKEMLLAVGDRYEKDIAAAKAADAPYR 162 >gi|220934170|ref|YP_002513069.1| NADH-quinone oxidoreductase, chain I [Thioalkalivibrio sp. HL-EbGR7] gi|219995480|gb|ACL72082.1| NADH-quinone oxidoreductase, chain I [Thioalkalivibrio sp. HL-EbGR7] Length = 163 Score = 157 bits (396), Expect = 6e-37, Method: Composition-based stats. Identities = 92/160 (57%), Positives = 105/160 (65%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 R L E + L RY F K T+ YP EK SPRFRG HALRRYPNGEERC Sbjct: 5 IRNFFKSFMLWELLIGMRLTGRYLFARKITVQYPEEKTPMSPRFRGLHALRRYPNGEERC 64 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEA+CPA AITIES R GTRRT RYDID+ KCI+CG C+EACPVD+IVE Sbjct: 65 IACKLCEAVCPALAITIESEQRAD-GTRRTTRYDIDLFKCIFCGFCEEACPVDSIVETHL 123 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FE+ E R E K++LL GDR+E +I D+PYR Sbjct: 124 FEYHFENRGEQIMTKDKLLAIGDRYEQQIAAARAADAPYR 163 >gi|117926901|ref|YP_867518.1| NADH dehydrogenase subunit I [Magnetococcus sp. MC-1] gi|156633523|sp|A0LDR9|NUOI_MAGSM RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|117610657|gb|ABK46112.1| NADH dehydrogenase subunit I [Magnetococcus sp. MC-1] Length = 164 Score = 157 bits (396), Expect = 7e-37, Method: Composition-based stats. Identities = 83/162 (51%), Positives = 102/162 (62%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 + ++ L L+E + LRY F+ TI YP E+ SPRFRG H LRRY GEE Sbjct: 3 NAMKQLMASLALRELWQGMAVTLRYMFRPNITIQYPEERTPYSPRFRGIHVLRRYEGGEE 62 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RC+ACKLCEAICPAQAI IE R T YDID+ KCIYCGLC+EACPV+AIV G Sbjct: 63 RCVACKLCEAICPAQAIYIEIDTESRADKRLTKVYDIDLFKCIYCGLCEEACPVEAIVMG 122 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 P + A E R +Y K++LL NG+ W +EI + D+ YR Sbjct: 123 PYLDMAYEDRNARFYKKDQLLANGESWRAEIDARLNADAKYR 164 >gi|53718855|ref|YP_107841.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei K96243] gi|53725807|ref|YP_103426.1| NADH dehydrogenase subunit I [Burkholderia mallei ATCC 23344] gi|67642184|ref|ZP_00440944.1| NADH-quinone oxidoreductase, i subunit [Burkholderia mallei GB8 horse 4] gi|76809047|ref|YP_332852.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei 1710b] gi|121600349|ref|YP_992477.1| NADH dehydrogenase subunit I [Burkholderia mallei SAVP1] gi|124383581|ref|YP_001026720.1| NADH dehydrogenase subunit I [Burkholderia mallei NCTC 10229] gi|126448769|ref|YP_001079995.1| NADH dehydrogenase subunit I [Burkholderia mallei NCTC 10247] gi|126452103|ref|YP_001065585.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei 1106a] gi|134283892|ref|ZP_01770588.1| NADH dehydrogenase I, I subunit [Burkholderia pseudomallei 305] gi|167000360|ref|ZP_02266178.1| NADH dehydrogenase I, I subunit [Burkholderia mallei PRL-20] gi|167718853|ref|ZP_02402089.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei DM98] gi|167737861|ref|ZP_02410635.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei 14] gi|167815044|ref|ZP_02446724.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei 91] gi|167823460|ref|ZP_02454931.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei 9] gi|167845012|ref|ZP_02470520.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei B7210] gi|167893553|ref|ZP_02480955.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei 7894] gi|167901999|ref|ZP_02489204.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei NCTC 13177] gi|167910235|ref|ZP_02497326.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei 112] gi|167918268|ref|ZP_02505359.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei BCC215] gi|217420048|ref|ZP_03451554.1| NADH dehydrogenase I, I subunit [Burkholderia pseudomallei 576] gi|226195304|ref|ZP_03790893.1| NADH dehydrogenase I, I subunit [Burkholderia pseudomallei Pakistan 9] gi|237811590|ref|YP_002896041.1| NADH-quinone oxidoreductase subunit i (NADH dehydrogenase i subunit i) (ndh-1 subunit i) [Burkholderia pseudomallei MSHR346] gi|242314671|ref|ZP_04813687.1| NADH dehydrogenase I, I subunit [Burkholderia pseudomallei 1106b] gi|254175738|ref|ZP_04882398.1| NADH dehydrogenase I, I subunit [Burkholderia mallei ATCC 10399] gi|254181179|ref|ZP_04887776.1| NADH-quinone oxidoreductase, I subunit [Burkholderia pseudomallei 1655] gi|254190542|ref|ZP_04897049.1| NADH-quinone oxidoreductase, I subunit [Burkholderia pseudomallei Pasteur 52237] gi|254195148|ref|ZP_04901577.1| NADH-quinone oxidoreductase, I subunit [Burkholderia pseudomallei S13] gi|254202102|ref|ZP_04908465.1| NADH dehydrogenase I, I subunit [Burkholderia mallei FMH] gi|254207432|ref|ZP_04913782.1| NADH dehydrogenase I, I subunit [Burkholderia mallei JHU] gi|254260039|ref|ZP_04951093.1| NADH-quinone oxidoreductase, I subunit [Burkholderia pseudomallei 1710a] gi|254298541|ref|ZP_04965993.1| NADH-quinone oxidoreductase, I subunit [Burkholderia pseudomallei 406e] gi|254359854|ref|ZP_04976124.1| NADH dehydrogenase I, I subunit [Burkholderia mallei 2002721280] gi|81380042|sp|Q63VM5|NUOI_BURPS RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|81604658|sp|Q62IP3|NUOI_BURMA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|115502520|sp|Q3JUA1|NUOI_BURP1 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|156633514|sp|A3NTB4|NUOI_BURP0 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|166918786|sp|A3MIA9|NUOI_BURM7 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|166918787|sp|A2S451|NUOI_BURM9 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|166918788|sp|A1V2M4|NUOI_BURMS RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|52209269|emb|CAH35214.1| putative NADH dehydrogenase I chain I [Burkholderia pseudomallei K96243] gi|52429230|gb|AAU49823.1| NADH dehydrogenase I, I subunit [Burkholderia mallei ATCC 23344] gi|76578500|gb|ABA47975.1| NADH dehydrogenase I, I subunit [Burkholderia pseudomallei 1710b] gi|121229159|gb|ABM51677.1| NADH dehydrogenase I, I subunit [Burkholderia mallei SAVP1] gi|124291601|gb|ABN00870.1| NADH dehydrogenase I, I subunit [Burkholderia mallei NCTC 10229] gi|126225745|gb|ABN89285.1| NADH dehydrogenase I, I subunit [Burkholderia pseudomallei 1106a] gi|126241639|gb|ABO04732.1| NADH dehydrogenase I, I subunit [Burkholderia mallei NCTC 10247] gi|134244681|gb|EBA44779.1| NADH dehydrogenase I, I subunit [Burkholderia pseudomallei 305] gi|147746349|gb|EDK53426.1| NADH dehydrogenase I, I subunit [Burkholderia mallei FMH] gi|147751326|gb|EDK58393.1| NADH dehydrogenase I, I subunit [Burkholderia mallei JHU] gi|148029094|gb|EDK86999.1| NADH dehydrogenase I, I subunit [Burkholderia mallei 2002721280] gi|157808385|gb|EDO85555.1| NADH-quinone oxidoreductase, I subunit [Burkholderia pseudomallei 406e] gi|157938217|gb|EDO93887.1| NADH-quinone oxidoreductase, I subunit [Burkholderia pseudomallei Pasteur 52237] gi|160696782|gb|EDP86752.1| NADH dehydrogenase I, I subunit [Burkholderia mallei ATCC 10399] gi|169651896|gb|EDS84589.1| NADH-quinone oxidoreductase, I subunit [Burkholderia pseudomallei S13] gi|184211717|gb|EDU08760.1| NADH-quinone oxidoreductase, I subunit [Burkholderia pseudomallei 1655] gi|217397352|gb|EEC37368.1| NADH dehydrogenase I, I subunit [Burkholderia pseudomallei 576] gi|225932506|gb|EEH28504.1| NADH dehydrogenase I, I subunit [Burkholderia pseudomallei Pakistan 9] gi|237504518|gb|ACQ96836.1| NADH-quinone oxidoreductase subunit i (NADH dehydrogenase i subunit i) (ndh-1 subunit i) [Burkholderia pseudomallei MSHR346] gi|238523280|gb|EEP86719.1| NADH-quinone oxidoreductase, i subunit [Burkholderia mallei GB8 horse 4] gi|242137910|gb|EES24312.1| NADH dehydrogenase I, I subunit [Burkholderia pseudomallei 1106b] gi|243063694|gb|EES45880.1| NADH dehydrogenase I, I subunit [Burkholderia mallei PRL-20] gi|254218728|gb|EET08112.1| NADH-quinone oxidoreductase, I subunit [Burkholderia pseudomallei 1710a] Length = 162 Score = 156 bits (395), Expect = 7e-37, Method: Composition-based stats. Identities = 90/163 (55%), Positives = 107/163 (65%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + FL E + L RY FK K T+ +P EK SPRFRG HALRRY NGE Sbjct: 1 MTAIQQFFKTFFLTELLKGLALTGRYTFKRKFTVQFPEEKTPISPRFRGLHALRRYENGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIES R + TRRT RYDID+ KCI+CG C+E+CPVD+IVE Sbjct: 61 ERCIACKLCEAVCPALAITIESETRADN-TRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +LY+ K+ LL GDR+E EI D+ YR Sbjct: 120 TQILEYHGEKRGDLYFTKDMLLAVGDRYEKEIAAAKAADARYR 162 >gi|312796893|ref|YP_004029815.1| NADH-quinone oxidoreductase chain I [Burkholderia rhizoxinica HKI 454] gi|312168668|emb|CBW75671.1| NADH-quinone oxidoreductase chain I (EC 1.6.5.3) [Burkholderia rhizoxinica HKI 454] Length = 162 Score = 156 bits (395), Expect = 7e-37, Method: Composition-based stats. Identities = 89/163 (54%), Positives = 109/163 (66%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + FL E + L RY F+ K T+ +P EK SPRFRG HALRRY NGE Sbjct: 1 MNAIQNFFKTFFLTELLKGLALTGRYAFQRKITVQFPEEKTPISPRFRGLHALRRYENGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIES R + TRRT RYDID+ KCI+CG C+E+CPVD+IVE Sbjct: 61 ERCIACKLCEAVCPALAITIESEVRADN-TRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +LY+ K+ LL GDR+E++I D+PYR Sbjct: 120 TQILEYHGEKRGDLYFTKDMLLAVGDRYEAQIAAAKAADAPYR 162 >gi|121998536|ref|YP_001003323.1| NADH dehydrogenase subunit I [Halorhodospira halophila SL1] gi|156633521|sp|A1WXV9|NUOI_HALHL RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|121589941|gb|ABM62521.1| NADH dehydrogenase subunit I [Halorhodospira halophila SL1] Length = 163 Score = 156 bits (395), Expect = 8e-37, Method: Composition-based stats. Identities = 85/164 (51%), Positives = 106/164 (64%), Gaps = 2/164 (1%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYF-FKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59 MR ++ E + L R+ F+ T+ +P E+ SPRFRG ALRRYPNG Sbjct: 1 MRPLNDYLNSFLFTELLRGLRLTARHMVFRRSITLEFPEERAPKSPRFRGHLALRRYPNG 60 Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 EERCIACKLCEA+CPA AITI+S R GTRRT RYDIDM KCIYCG C+E+CPVD+IV Sbjct: 61 EERCIACKLCEAVCPALAITIDSHQRAD-GTRRTTRYDIDMFKCIYCGFCEESCPVDSIV 119 Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 F E R E DK++LL GD++ES++ + D+PYR Sbjct: 120 LTRLDTFHMERRDERVADKQKLLAMGDKYESQLAADRAADAPYR 163 >gi|319761770|ref|YP_004125707.1| NADH-quinone oxidoreductase, chain i [Alicycliphilus denitrificans BC] gi|330826550|ref|YP_004389853.1| NAD(P)H-quinone oxidoreductase subunit I [Alicycliphilus denitrificans K601] gi|317116331|gb|ADU98819.1| NADH-quinone oxidoreductase, chain I [Alicycliphilus denitrificans BC] gi|329311922|gb|AEB86337.1| NAD(P)H-quinone oxidoreductase subunit I [Alicycliphilus denitrificans K601] Length = 170 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 89/160 (55%), Positives = 104/160 (65%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + L E L RY F+ K T+ +P EK SPRFRG HALRRY NGEERC Sbjct: 12 IKDFFKSFMLWELAKGMVLTGRYAFRGKVTVQFPEEKTPLSPRFRGLHALRRYDNGEERC 71 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEA+CPA AITIES R GTRRT RYDID+ KCI+CG C+E+CPVD+IVE Sbjct: 72 IACKLCEAVCPAMAITIESDVRSD-GTRRTTRYDIDLTKCIFCGFCEESCPVDSIVETQI 130 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +LY+ KE LL GDR+E EI D+ YR Sbjct: 131 LEYHGEKRGDLYFTKEMLLAVGDRYEPEIAAAKAADAKYR 170 >gi|57239100|ref|YP_180236.1| NADH dehydrogenase subunit I [Ehrlichia ruminantium str. Welgevonden] gi|58579047|ref|YP_197259.1| NADH dehydrogenase subunit I [Ehrlichia ruminantium str. Welgevonden] gi|58617106|ref|YP_196305.1| NADH dehydrogenase subunit I [Ehrlichia ruminantium str. Gardel] gi|75507519|sp|Q5FHN1|NUOI_EHRRG RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|81672815|sp|Q5HBF8|NUOI_EHRRW RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|57161179|emb|CAH58093.1| NADH-quinone oxidoreductase chain I [Ehrlichia ruminantium str. Welgevonden] gi|58416718|emb|CAI27831.1| NADH-quinone oxidoreductase chain I [Ehrlichia ruminantium str. Gardel] gi|58417673|emb|CAI26877.1| NADH-quinone oxidoreductase chain I [Ehrlichia ruminantium str. Welgevonden] Length = 168 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 100/146 (68%), Positives = 112/146 (76%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 ++ LRY FK K T+NYP EK S RFRGEHALR Y NGEERCIACKLCEAICPAQ Sbjct: 22 FKGMYITLRYMFKPKVTLNYPLEKNPLSTRFRGEHALRTYKNGEERCIACKLCEAICPAQ 81 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 AITIE+ R D +RRTVRYDIDM KCIYCG CQEACPVDAIVEGPNFE+ATETR+EL Y Sbjct: 82 AITIEAQERDTDNSRRTVRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEYATETREELMY 141 Query: 137 DKERLLNNGDRWESEIVRNIVTDSPY 162 +K +LL+NG WE I I +S + Sbjct: 142 NKSKLLHNGQIWEEAIDLRIKKNSKF 167 >gi|121593385|ref|YP_985281.1| NADH dehydrogenase subunit I [Acidovorax sp. JS42] gi|156632699|sp|A1W4N0|NUOI_ACISJ RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|120605465|gb|ABM41205.1| NADH dehydrogenase subunit I [Acidovorax sp. JS42] Length = 170 Score = 156 bits (393), Expect = 1e-36, Method: Composition-based stats. Identities = 89/160 (55%), Positives = 106/160 (66%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + L E L RY F+ K T+ +P EK SPRFRG HALRRY NGEERC Sbjct: 12 IKDFFKSFMLWELAKGMALTGRYTFRRKVTVQFPEEKTPLSPRFRGLHALRRYENGEERC 71 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEA+CPA AITIES R G+RRT RYDID+ KCI+CG C+E+CPVD+IVE P Sbjct: 72 IACKLCEAVCPAVAITIESDVRAD-GSRRTTRYDIDLTKCIFCGFCEESCPVDSIVETPI 130 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 FE+ E R +LY+ K+ LL GDR+E EI D+ YR Sbjct: 131 FEYHGEKRGDLYFTKDMLLAVGDRYEPEIAAAKAADAKYR 170 >gi|126439381|ref|YP_001058346.1| NADH dehydrogenase subunit I [Burkholderia pseudomallei 668] gi|166918789|sp|A3N7M5|NUOI_BURP6 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|126218874|gb|ABN82380.1| NADH-quinone oxidoreductase, I subunit [Burkholderia pseudomallei 668] Length = 162 Score = 156 bits (393), Expect = 1e-36, Method: Composition-based stats. Identities = 89/163 (54%), Positives = 107/163 (65%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + FL E + L RY FK K T+ +P EK SPRFRG HALRRY NGE Sbjct: 1 MTAIQQFFKTFFLTELLKGLALTGRYTFKRKFTVQFPEEKTPISPRFRGLHALRRYENGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIES R + TRRT RYDID+ KCI+CG C+E+CPVD+IVE Sbjct: 61 ERCIACKLCEAVCPALAITIESETRADN-TRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +LY+ K+ LL GDR+E E+ D+ YR Sbjct: 120 TQILEYHGEKRGDLYFTKDMLLAVGDRYEKEVAAAKAADARYR 162 >gi|34581178|ref|ZP_00142658.1| NADH dehydrogenase I chain I [Rickettsia sibirica 246] gi|28262563|gb|EAA26067.1| NADH dehydrogenase I chain I [Rickettsia sibirica 246] Length = 143 Score = 156 bits (393), Expect = 1e-36, Method: Composition-based stats. Identities = 105/144 (72%), Positives = 113/144 (78%), Gaps = 1/144 (0%) Query: 20 FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79 L L+YFFK K TINYP+EK SPRF+GEHALRRY NGEERCIACKLCEAICPAQAI Sbjct: 1 MALTLKYFFKPKVTINYPYEKSPISPRFKGEHALRRYENGEERCIACKLCEAICPAQAIV 60 Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139 IE+ R DG+RRT RYDIDM KCIYCGLCQEACPVDAIVEGPNFEFA+ T L YDKE Sbjct: 61 IEADER-EDGSRRTTRYDIDMTKCIYCGLCQEACPVDAIVEGPNFEFASLTHTALIYDKE 119 Query: 140 RLLNNGDRWESEIVRNIVTDSPYR 163 RLL NGDRWE + + D YR Sbjct: 120 RLLQNGDRWEQALASKLHKDYEYR 143 >gi|167585980|ref|ZP_02378368.1| NADH dehydrogenase subunit I [Burkholderia ubonensis Bu] Length = 162 Score = 155 bits (391), Expect = 2e-36, Method: Composition-based stats. Identities = 90/163 (55%), Positives = 108/163 (66%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + FL E + L RY F+ K T+ +P EK SPRFRG HALRRY NGE Sbjct: 1 MTAIQHFFKTFFLTELLKGLALTGRYAFRRKFTVQFPEEKTPISPRFRGLHALRRYENGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIES R + TRRT RYDID+ KCI+CG C+E+CPVD+IVE Sbjct: 61 ERCIACKLCEAVCPAMAITIESETRADN-TRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +LY+ KE LL GDR+E +I D+PYR Sbjct: 120 TQILEYHGEKRGDLYFTKEMLLAVGDRYEKDIAAAKAADAPYR 162 >gi|167836057|ref|ZP_02462940.1| NADH dehydrogenase subunit I [Burkholderia thailandensis MSMB43] Length = 162 Score = 155 bits (391), Expect = 2e-36, Method: Composition-based stats. Identities = 91/163 (55%), Positives = 107/163 (65%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + FL E + L RY FK K T+ +P EK SPRFRG HALRRY NGE Sbjct: 1 MTAIQHFFKTFFLTELLKGLALTGRYTFKRKFTVQFPEEKTPISPRFRGLHALRRYENGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIES R D TRRT RYDID+ KCI+CG C+E+CPVD+IVE Sbjct: 61 ERCIACKLCEAVCPAMAITIESQTR-EDNTRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +LY+ K+ LL GDR+E EI D+ YR Sbjct: 120 TQILEYHGEKRGDLYFTKDMLLAVGDRYEKEIAAAKAADARYR 162 >gi|330817784|ref|YP_004361489.1| NADH dehydrogenase subunit I [Burkholderia gladioli BSR3] gi|327370177|gb|AEA61533.1| NADH dehydrogenase subunit I [Burkholderia gladioli BSR3] Length = 162 Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 91/163 (55%), Positives = 108/163 (66%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + FL E V + RY FK K T+ +P EK SPRFRG HALRRY NGE Sbjct: 1 MTAIQQFFKTFFLTELVKGLAMTGRYTFKRKITVQFPEEKTPISPRFRGLHALRRYENGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIES R + TRRT RYDID+ KCI+CG C+E+CPVD+IVE Sbjct: 61 ERCIACKLCEAVCPAMAITIESQVRADN-TRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +LY+ KE LL GDR+E +I D+PYR Sbjct: 120 TQILEYHGEKRGDLYFTKEMLLAVGDRYEKDIAAAKAADAPYR 162 >gi|134296425|ref|YP_001120160.1| NADH dehydrogenase subunit I [Burkholderia vietnamiensis G4] gi|166918790|sp|A4JGC2|NUOI_BURVG RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|134139582|gb|ABO55325.1| NADH dehydrogenase subunit I [Burkholderia vietnamiensis G4] Length = 162 Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 90/163 (55%), Positives = 108/163 (66%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + FL E + L RY F+ K T+ +P EK SPRFRG HALRRY NGE Sbjct: 1 MTAIQHFFKTFFLTELLKGLALTGRYTFRRKFTVQFPEEKTPISPRFRGLHALRRYENGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIES R + TRRT RYDID+ KCI+CG C+E+CPVD+IVE Sbjct: 61 ERCIACKLCEAVCPAMAITIESETRADN-TRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +LY+ KE LL GDR+E +I D+PYR Sbjct: 120 TQILEYHGEKRGDLYFTKEMLLAVGDRYEKDIAAAKAADAPYR 162 >gi|115352330|ref|YP_774169.1| NADH dehydrogenase subunit I [Burkholderia ambifaria AMMD] gi|161524212|ref|YP_001579224.1| NADH dehydrogenase subunit I [Burkholderia multivorans ATCC 17616] gi|170698117|ref|ZP_02889197.1| NADH-quinone oxidoreductase, chain I [Burkholderia ambifaria IOP40-10] gi|171316311|ref|ZP_02905532.1| NADH-quinone oxidoreductase, chain I [Burkholderia ambifaria MEX-5] gi|172061201|ref|YP_001808853.1| NADH dehydrogenase subunit I [Burkholderia ambifaria MC40-6] gi|189351031|ref|YP_001946659.1| NADH dehydrogenase subunit I [Burkholderia multivorans ATCC 17616] gi|221199664|ref|ZP_03572708.1| NADH dehydrogenase I, I subunit [Burkholderia multivorans CGD2M] gi|221205436|ref|ZP_03578451.1| NADH dehydrogenase I, I subunit [Burkholderia multivorans CGD2] gi|221211743|ref|ZP_03584722.1| NADH dehydrogenase I, I subunit [Burkholderia multivorans CGD1] gi|122322649|sp|Q0BDD8|NUOI_BURCM RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|226737384|sp|B1YTP9|NUOI_BURA4 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|226737387|sp|A9AFZ5|NUOI_BURM1 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|115282318|gb|ABI87835.1| NADH dehydrogenase subunit I [Burkholderia ambifaria AMMD] gi|160341641|gb|ABX14727.1| NADH-quinone oxidoreductase, chain I [Burkholderia multivorans ATCC 17616] gi|170136975|gb|EDT05223.1| NADH-quinone oxidoreductase, chain I [Burkholderia ambifaria IOP40-10] gi|171098537|gb|EDT43338.1| NADH-quinone oxidoreductase, chain I [Burkholderia ambifaria MEX-5] gi|171993718|gb|ACB64637.1| NADH-quinone oxidoreductase, chain I [Burkholderia ambifaria MC40-6] gi|189335053|dbj|BAG44123.1| NADH dehydrogenase I chain I [Burkholderia multivorans ATCC 17616] gi|221169104|gb|EEE01572.1| NADH dehydrogenase I, I subunit [Burkholderia multivorans CGD1] gi|221174274|gb|EEE06706.1| NADH dehydrogenase I, I subunit [Burkholderia multivorans CGD2] gi|221180949|gb|EEE13352.1| NADH dehydrogenase I, I subunit [Burkholderia multivorans CGD2M] Length = 162 Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 90/163 (55%), Positives = 108/163 (66%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + FL E + L RY F+ K T+ +P EK SPRFRG HALRRY NGE Sbjct: 1 MTAIQHFFKTFFLTELLKGLALTGRYTFRRKFTVQFPEEKTPISPRFRGLHALRRYENGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIES R + TRRT RYDID+ KCI+CG C+E+CPVD+IVE Sbjct: 61 ERCIACKLCEAVCPALAITIESETRADN-TRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +LY+ KE LL GDR+E +I D+PYR Sbjct: 120 TQILEYHGEKRGDLYFTKEMLLAVGDRYEKDIAAAKAADAPYR 162 >gi|325524298|gb|EGD02410.1| NADH dehydrogenase subunit I [Burkholderia sp. TJI49] Length = 162 Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 91/163 (55%), Positives = 108/163 (66%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + FL E + L RY FK K T+ +P EK SPRFRG HALRRY NGE Sbjct: 1 MTAIQHFFKTFFLTELLKGLALTGRYTFKRKFTVQFPEEKTPISPRFRGLHALRRYENGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIES R + TRRT RYDID+ KCI+CG C+E+CPVD+IVE Sbjct: 61 ERCIACKLCEAVCPAMAITIESETRADN-TRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +LY+ KE LL GDR+E +I D+PYR Sbjct: 120 TQILEYHGEKRGDLYFTKEMLLAVGDRYEKDIAAAKAADAPYR 162 >gi|107023180|ref|YP_621507.1| NADH dehydrogenase subunit I [Burkholderia cenocepacia AU 1054] gi|116690262|ref|YP_835885.1| NADH dehydrogenase subunit I [Burkholderia cenocepacia HI2424] gi|170733601|ref|YP_001765548.1| NADH dehydrogenase subunit I [Burkholderia cenocepacia MC0-3] gi|254247665|ref|ZP_04940986.1| NADH-quinone oxidoreductase, chain I [Burkholderia cenocepacia PC184] gi|254251869|ref|ZP_04945187.1| Formate hydrogenlyase subunit 6/NADH [Burkholderia dolosa AUO158] gi|115502519|sp|Q1BV21|NUOI_BURCA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|156633513|sp|A0K915|NUOI_BURCH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|226737385|sp|B1JVN3|NUOI_BURCC RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|105893369|gb|ABF76534.1| NADH dehydrogenase subunit I [Burkholderia cenocepacia AU 1054] gi|116648351|gb|ABK08992.1| NADH dehydrogenase subunit I [Burkholderia cenocepacia HI2424] gi|124872441|gb|EAY64157.1| NADH-quinone oxidoreductase, chain I [Burkholderia cenocepacia PC184] gi|124894478|gb|EAY68358.1| Formate hydrogenlyase subunit 6/NADH [Burkholderia dolosa AUO158] gi|169816843|gb|ACA91426.1| NADH-quinone oxidoreductase, chain I [Burkholderia cenocepacia MC0-3] Length = 162 Score = 154 bits (390), Expect = 3e-36, Method: Composition-based stats. Identities = 91/163 (55%), Positives = 108/163 (66%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + FL E + L RY FK K T+ +P EK SPRFRG HALRRY NGE Sbjct: 1 MTAIQHFFKTFFLTELLKGLALTGRYTFKRKFTVQFPEEKTPISPRFRGLHALRRYENGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIES R + TRRT RYDID+ KCI+CG C+E+CPVD+IVE Sbjct: 61 ERCIACKLCEAVCPALAITIESETRADN-TRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +LY+ KE LL GDR+E +I D+PYR Sbjct: 120 TQILEYHGEKRGDLYFTKEMLLAVGDRYEKDIAAAKAADAPYR 162 >gi|206560695|ref|YP_002231460.1| NADH dehydrogenase subunit I [Burkholderia cenocepacia J2315] gi|226737386|sp|B4E5L4|NUOI_BURCJ RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|198036737|emb|CAR52637.1| putative NADH dehydrogenase I chain I [Burkholderia cenocepacia J2315] Length = 162 Score = 154 bits (389), Expect = 3e-36, Method: Composition-based stats. Identities = 90/163 (55%), Positives = 108/163 (66%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + FL E + L RY FK K T+ +P EK SPRFRG HALRRY NGE Sbjct: 1 MTAIQHFFKTFFLTELLKGLALTGRYTFKRKFTVQFPEEKTPISPRFRGLHALRRYENGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIES R + TRRT RYDID+ KCI+CG C+E+CPVD+IVE Sbjct: 61 ERCIACKLCEAVCPALAITIESETRADN-TRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +LY+ K+ LL GDR+E +I D+PYR Sbjct: 120 TQILEYHGEKRGDLYFTKDMLLAVGDRYEKDIAAAKAADAPYR 162 >gi|238028135|ref|YP_002912366.1| NADH dehydrogenase subunit I [Burkholderia glumae BGR1] gi|237877329|gb|ACR29662.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Burkholderia glumae BGR1] Length = 162 Score = 154 bits (389), Expect = 4e-36, Method: Composition-based stats. Identities = 91/163 (55%), Positives = 108/163 (66%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + FL E + L RY FK K T+ +P EK SPRFRG HALRRY NGE Sbjct: 1 MTAIQHFFKTFFLTELLKGLALTGRYTFKRKFTVQFPEEKTPISPRFRGLHALRRYENGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIES R + TRRT RYDID+ KCI+CG C+E+CPVD+IVE Sbjct: 61 ERCIACKLCEAVCPAMAITIESQTRADN-TRRTTRYDIDLTKCIFCGFCEESCPVDSIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +LY+ KE LL GDR+E +I D+PYR Sbjct: 120 TQILEYHGEKRGDLYFTKEMLLAVGDRYEKDIAAAKAADAPYR 162 >gi|302501279|ref|XP_003012632.1| hypothetical protein ARB_01245 [Arthroderma benhamiae CBS 112371] gi|302665888|ref|XP_003024550.1| hypothetical protein TRV_01262 [Trichophyton verrucosum HKI 0517] gi|291176191|gb|EFE31992.1| hypothetical protein ARB_01245 [Arthroderma benhamiae CBS 112371] gi|291188609|gb|EFE43939.1| hypothetical protein TRV_01262 [Trichophyton verrucosum HKI 0517] gi|326473101|gb|EGD97110.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Trichophyton tonsurans CBS 112818] gi|326477944|gb|EGE01954.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Trichophyton equinum CBS 127.97] Length = 216 Score = 153 bits (387), Expect = 6e-36, Method: Composition-based stats. Identities = 99/160 (61%), Positives = 112/160 (70%), Gaps = 12/160 (7%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + + E TI YPFEKG SPRFRGEHALRRYP+GEERC Sbjct: 69 LDSATKYFLMAELFRGI-----------YTIFYPFEKGPISPRFRGEHALRRYPSGEERC 117 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAITIE+ R G+RRT RYDIDM KCIYCG CQE+CPVDAIVE PN Sbjct: 118 IACKLCEAICPAQAITIEAEERVD-GSRRTTRYDIDMTKCIYCGFCQESCPVDAIVESPN 176 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ATETR+EL Y+KE+LL NGD+WE E+ D+PYR Sbjct: 177 AEYATETREELLYNKEKLLANGDKWEPELAAAARADAPYR 216 >gi|88608014|ref|YP_506692.1| NADH dehydrogenase subunit I [Neorickettsia sennetsu str. Miyayama] gi|115502534|sp|Q2GCV4|NUOI_NEOSM RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|88600183|gb|ABD45651.1| NADH dehydrogenase I, I subunit [Neorickettsia sennetsu str. Miyayama] Length = 160 Score = 153 bits (387), Expect = 7e-36, Method: Composition-based stats. Identities = 99/156 (63%), Positives = 116/156 (74%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 +S + L F F L YFF K TI YP EKG S RFRGEHALRRY NGEERC Sbjct: 1 MFKFLSQMQLTRFFVGFRTVLWYFFAPKVTIKYPQEKGPISLRFRGEHALRRYKNGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCE +CPAQAITIE+ PR DG+RR +YDIDM KCIYCG CQEACPVDAIVEGPN Sbjct: 61 IACKLCEVVCPAQAITIEAAPRESDGSRRATKYDIDMTKCIYCGFCQEACPVDAIVEGPN 120 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 FEFA E R++L YDK++LL+NG +WES +++ + + Sbjct: 121 FEFARENREDLLYDKKKLLDNGSKWESALIKMLNRN 156 >gi|77166015|ref|YP_344540.1| NADH dehydrogenase subunit I [Nitrosococcus oceani ATCC 19707] gi|254436315|ref|ZP_05049821.1| NADH-quinone oxidoreductase, chain I subfamily [Nitrosococcus oceani AFC27] gi|115502512|sp|Q3J836|NUOI2_NITOC RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName: Full=NADH dehydrogenase I subunit I 2; AltName: Full=NDH-1 subunit I 2 gi|76884329|gb|ABA59010.1| NADH dehydrogenase subunit I [Nitrosococcus oceani ATCC 19707] gi|207088005|gb|EDZ65278.1| NADH-quinone oxidoreductase, chain I subfamily [Nitrosococcus oceani AFC27] Length = 162 Score = 153 bits (386), Expect = 8e-36, Method: Composition-based stats. Identities = 89/163 (54%), Positives = 109/163 (66%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M R + L E + L RY F K T+ +P E+ SPRFRG HALRRYPNGE Sbjct: 1 MNTLRSYIKSFLLWELLLGLKLTGRYLFTKKVTVQFPEERTPQSPRFRGLHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITI+S R DGTRRT RYDID+ KCIYCG C+E+CPVD+IVE Sbjct: 61 ERCIACKLCEAVCPALAITIDSEQR-EDGTRRTTRYDIDLFKCIYCGFCEESCPVDSIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 ++ E R E KE+LL GD++E++I + D+PYR Sbjct: 120 TRILDYHFEERGEHILHKEQLLALGDKYEAQIAADRAADAPYR 162 >gi|332528759|ref|ZP_08404736.1| NADH dehydrogenase subunit I [Hylemonella gracilis ATCC 19624] gi|332041825|gb|EGI78174.1| NADH dehydrogenase subunit I [Hylemonella gracilis ATCC 19624] Length = 180 Score = 153 bits (386), Expect = 8e-36, Method: Composition-based stats. Identities = 90/159 (56%), Positives = 103/159 (64%), Gaps = 1/159 (0%) Query: 5 RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64 + L E + L RY F K T+ YP EK SPRFRG HA RRY NGEERCI Sbjct: 23 KDFFKSFMLVELLKGMALTGRYTFARKVTLQYPEEKTPLSPRFRGLHAQRRYENGEERCI 82 Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 ACKLCEA+CPA AITIES R GTRRT RYDID+ KCI+CG C+EACPVDAIVE Sbjct: 83 ACKLCEAVCPAMAITIESDARAD-GTRRTTRYDIDLTKCIFCGFCEEACPVDAIVETHIL 141 Query: 125 EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 E+ E R +LY+ K+ LL GDR+E EI D+ YR Sbjct: 142 EYHGEKRGDLYFTKDMLLAVGDRYEKEIAAAKAADAKYR 180 >gi|300113273|ref|YP_003759848.1| NADH-quinone oxidoreductase subunit I [Nitrosococcus watsonii C-113] gi|299539210|gb|ADJ27527.1| NADH-quinone oxidoreductase, chain I [Nitrosococcus watsonii C-113] Length = 162 Score = 153 bits (386), Expect = 9e-36, Method: Composition-based stats. Identities = 89/163 (54%), Positives = 108/163 (66%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M R V L E + L RY F K T+ +P E+ SPRFRG HALRRYPNGE Sbjct: 1 MNTLRSYVKSFLLWELLLGLKLTGRYLFTKKVTVQFPEERTPQSPRFRGLHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITI+S R GTRRT RYDID+ KCIYCG C+E+CPVD+IVE Sbjct: 61 ERCIACKLCEAVCPALAITIDSEQRDD-GTRRTTRYDIDLFKCIYCGFCEESCPVDSIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 ++ E R E KE+LL GD++E++I + D+PYR Sbjct: 120 TRILDYHFEERGEHILHKEQLLALGDKYEAQIAADRAADAPYR 162 >gi|254995042|ref|ZP_05277232.1| NADH dehydrogenase subunit I [Anaplasma marginale str. Mississippi] Length = 156 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 102/146 (69%), Positives = 113/146 (77%), Gaps = 1/146 (0%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V F L L F+ K T+ YP EKG S RFRGEHALRRY +GEERCIACKLCEAICPAQ Sbjct: 11 VKGFMLTLVSMFRPKVTLRYPSEKGPLSTRFRGEHALRRYDDGEERCIACKLCEAICPAQ 70 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 AITIE+ R G+RRTVRYDIDM KCIYCG CQEACPVDAIVEGPNFE+ATETR+EL Y Sbjct: 71 AITIEAAERGD-GSRRTVRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEYATETREELMY 129 Query: 137 DKERLLNNGDRWESEIVRNIVTDSPY 162 +KE+LL NGD WE + I + PY Sbjct: 130 NKEKLLCNGDVWEEALDFRIRKNRPY 155 >gi|226487090|emb|CAX75410.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8 [Schistosoma japonicum] Length = 137 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 102/138 (73%), Positives = 113/138 (81%), Gaps = 1/138 (0%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 FK T+NYPFEK SPRFRGEHALRRYP+GEERCIACKLCEAICPAQAITIE+ PR Sbjct: 1 MMFKEPATLNYPFEKSPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEPR 60 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNG 145 G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE++T+T +EL Y+KE+LL NG Sbjct: 61 AG-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEYSTQTHEELLYNKEKLLQNG 119 Query: 146 DRWESEIVRNIVTDSPYR 163 DRWE EI N+ D YR Sbjct: 120 DRWEVEISENLKADYVYR 137 >gi|255003195|ref|ZP_05278159.1| NADH dehydrogenase subunit I [Anaplasma marginale str. Puerto Rico] gi|255004324|ref|ZP_05279125.1| NADH dehydrogenase subunit I [Anaplasma marginale str. Virginia] Length = 156 Score = 152 bits (385), Expect = 1e-35, Method: Composition-based stats. Identities = 102/146 (69%), Positives = 113/146 (77%), Gaps = 1/146 (0%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V F L L F+ K T+ YP EKG S RFRGEHALRRY +GEERCIACKLCEAICPAQ Sbjct: 11 VKGFMLTLVSMFRPKVTLRYPSEKGPLSTRFRGEHALRRYDDGEERCIACKLCEAICPAQ 70 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 AITIE+ R G+RRTVRYDIDM KCIYCG CQEACPVDAIVEGPNFE+ATETR+EL Y Sbjct: 71 AITIEAAERGD-GSRRTVRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEYATETREELMY 129 Query: 137 DKERLLNNGDRWESEIVRNIVTDSPY 162 +KE+LL NGD WE + I + PY Sbjct: 130 NKEKLLCNGDVWEEALDFRIRKNRPY 155 >gi|56416854|ref|YP_153928.1| NADH dehydrogenase subunit I [Anaplasma marginale str. St. Maries] gi|222475219|ref|YP_002563635.1| NADH dehydrogenase I chain I (nuoI) [Anaplasma marginale str. Florida] gi|81359048|sp|Q5PAK7|NUOI_ANAMM RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|56388086|gb|AAV86673.1| NADH dehydrogenase [Anaplasma marginale str. St. Maries] gi|222419356|gb|ACM49379.1| NADH dehydrogenase I chain I (nuoI) [Anaplasma marginale str. Florida] Length = 160 Score = 152 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 102/146 (69%), Positives = 113/146 (77%), Gaps = 1/146 (0%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V F L L F+ K T+ YP EKG S RFRGEHALRRY +GEERCIACKLCEAICPAQ Sbjct: 15 VKGFMLTLVSMFRPKVTLRYPSEKGPLSTRFRGEHALRRYDDGEERCIACKLCEAICPAQ 74 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 AITIE+ R G+RRTVRYDIDM KCIYCG CQEACPVDAIVEGPNFE+ATETR+EL Y Sbjct: 75 AITIEAAERGD-GSRRTVRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEYATETREELMY 133 Query: 137 DKERLLNNGDRWESEIVRNIVTDSPY 162 +KE+LL NGD WE + I + PY Sbjct: 134 NKEKLLCNGDVWEEALDFRIRKNRPY 159 >gi|288942126|ref|YP_003444366.1| NADH-quinone oxidoreductase, chain I [Allochromatium vinosum DSM 180] gi|288897498|gb|ADC63334.1| NADH-quinone oxidoreductase, chain I [Allochromatium vinosum DSM 180] Length = 163 Score = 152 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 93/163 (57%), Positives = 113/163 (69%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 ++ R + L L E + RYFFK K T+ YP EK SPRFRG HALRRYPNGE Sbjct: 2 LKAARDYLHSLTLSELFKGLSVTGRYFFKRKFTVQYPEEKAPISPRFRGLHALRRYPNGE 61 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITIE PR DG+RRT RY+ID+ KCIYCG C+E+CPVD+IVE Sbjct: 62 ERCIACKLCEAVCPALAITIECEPR-EDGSRRTTRYEIDLFKCIYCGFCEESCPVDSIVE 120 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 +E+ ETR E K++LL GD++E+EI D+PYR Sbjct: 121 TGIYEYHFETRGEHILTKDKLLEIGDKYEAEIAAARAADAPYR 163 >gi|118602283|ref|YP_903498.1| NADH dehydrogenase subunit I [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|156633539|sp|A1AVS0|NUOI_RUTMC RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|118567222|gb|ABL02027.1| NADH dehydrogenase subunit I [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 163 Score = 152 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 83/162 (51%), Positives = 103/162 (63%), Gaps = 1/162 (0%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 + V L E + + K T+ +P E+ SPRFRG HALRRYPNGEE Sbjct: 3 KKLSKLVKDFTLSELRTGMKITAKELVNKKITVQFPEERTPISPRFRGLHALRRYPNGEE 62 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLCEA+CPA AITIES R GTRRT+ YDID+ KCI+CG C+EACPVDAIVE Sbjct: 63 RCIACKLCEAVCPANAITIESEMRDD-GTRRTIVYDIDLFKCIFCGFCEEACPVDAIVET 121 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 F++A ++RQ KERLL G + E I + + D+ Y+ Sbjct: 122 QIFDYAFKSRQGSIMTKERLLEVGSQNEQAINQARLEDAKYK 163 >gi|118359716|ref|XP_001013096.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial precursor, putative [Tetrahymena thermophila] gi|89294863|gb|EAR92851.1| NADH-ubiquinone oxidoreductase 23 kDa subunit, mitochondrial precursor, putative [Tetrahymena thermophila SB210] Length = 324 Score = 152 bits (383), Expect = 2e-35, Method: Composition-based stats. Identities = 95/156 (60%), Positives = 116/156 (74%), Gaps = 2/156 (1%) Query: 3 IFRCNVSFLFLKEFVGAFFL-CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 ++ + + E+ F+ + Y F+ + TINYPFEKG SP FRGEHALRRYP GEE Sbjct: 163 VWESSYQNIICPEYFYHFWFCGIVYSFEPEWTINYPFEKGPLSPLFRGEHALRRYPTGEE 222 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLC++ CPA+AITIE+ PR G+RRTVRYDIDM KCIYCG CQEACPVDAIVEG Sbjct: 223 RCIACKLCQSACPARAITIETEPRPD-GSRRTVRYDIDMTKCIYCGFCQEACPVDAIVEG 281 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIV 157 PN+E ++L+YDK +LL NGD+WE +I RNI Sbjct: 282 PNYEQTAYLHEDLFYDKYKLLENGDKWEPQIARNIE 317 >gi|56752941|gb|AAW24682.1| SJCHGC09319 protein [Schistosoma japonicum] Length = 137 Score = 151 bits (382), Expect = 2e-35, Method: Composition-based stats. Identities = 102/138 (73%), Positives = 113/138 (81%), Gaps = 1/138 (0%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 FK T+NYPFEK SPRFRGEHALRRYP+GEERCIACKLCEAICPAQAITIE+ PR Sbjct: 1 MIFKEPATLNYPFEKSPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAEPR 60 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNG 145 G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE++T+T +EL Y+KE+LL NG Sbjct: 61 AD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEYSTQTHEELLYNKEKLLQNG 119 Query: 146 DRWESEIVRNIVTDSPYR 163 DRWE EI N+ D YR Sbjct: 120 DRWEVEISENLKADYVYR 137 >gi|121609754|ref|YP_997561.1| NADH dehydrogenase subunit I [Verminephrobacter eiseniae EF01-2] gi|156633541|sp|A1WLN6|NUOI_VEREI RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|121554394|gb|ABM58543.1| NADH-quinone oxidoreductase, chain I [Verminephrobacter eiseniae EF01-2] Length = 169 Score = 151 bits (382), Expect = 2e-35, Method: Composition-based stats. Identities = 87/152 (57%), Positives = 105/152 (69%), Gaps = 1/152 (0%) Query: 12 FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71 L E L R+ F+ K T+ +P EK SPRFRG HALRRY NGEERCIACKLCEA Sbjct: 19 MLVELFKGMALTGRHAFRRKVTVQFPEEKTPLSPRFRGLHALRRYDNGEERCIACKLCEA 78 Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 +CPA AITIES R G+RRT RYDID+ KCI+CG C+E+CPVD+IVE FE+ E R Sbjct: 79 VCPALAITIESELRAD-GSRRTTRYDIDLTKCIFCGFCEESCPVDSIVETHIFEYHGEKR 137 Query: 132 QELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 +LY+ K+ LL GDR+E+EI D+ YR Sbjct: 138 GDLYFTKDMLLAVGDRYEAEIAAARAADAKYR 169 >gi|88607532|ref|YP_505378.1| NADH dehydrogenase subunit I [Anaplasma phagocytophilum HZ] gi|115502516|sp|Q2GJS3|NUOI_ANAPZ RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|88598595|gb|ABD44065.1| NADH dehydrogenase I, I subunit [Anaplasma phagocytophilum HZ] Length = 164 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 102/146 (69%), Positives = 113/146 (77%), Gaps = 1/146 (0%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V FFL L FK K T+ YP EKG S RFRGEHALRRY +GEERCIACKLCEAICPAQ Sbjct: 19 VHGFFLTLLAMFKPKVTLRYPHEKGPLSTRFRGEHALRRYESGEERCIACKLCEAICPAQ 78 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 AITIE+ R G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFE++TETR+EL Y Sbjct: 79 AITIEAEERSD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEYSTETREELMY 137 Query: 137 DKERLLNNGDRWESEIVRNIVTDSPY 162 +KE+LL NGD WE + I + PY Sbjct: 138 NKEKLLANGDIWEEALRYRIKKNQPY 163 >gi|292493660|ref|YP_003529099.1| NADH-quinone oxidoreductase, chain I [Nitrosococcus halophilus Nc4] gi|291582255|gb|ADE16712.1| NADH-quinone oxidoreductase, chain I [Nitrosococcus halophilus Nc4] Length = 162 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 89/163 (54%), Positives = 107/163 (65%), Gaps = 1/163 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M R L E + L RY F K T+ +P E+ SPRFRG HALRRYPNGE Sbjct: 1 MNTLRSYFKSFLLWELLLGLKLTGRYLFAKKVTVQFPEERTPQSPRFRGLHALRRYPNGE 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIACKLCEA+CPA AITI+S R DGTRRT YDID+ KCIYCG C+E+CPVD+IVE Sbjct: 61 ERCIACKLCEAVCPALAITIDSEQR-EDGTRRTTLYDIDLFKCIYCGFCEESCPVDSIVE 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 +F E R E KE+LL GD++E++I + D+PYR Sbjct: 120 TRILDFHFEERGEHILHKEQLLALGDKYEAQIAADRAADAPYR 162 >gi|68171162|ref|ZP_00544570.1| NADH-quinone oxidoreductase, chain I [Ehrlichia chaffeensis str. Sapulpa] gi|88657739|ref|YP_507496.1| NADH dehydrogenase subunit I [Ehrlichia chaffeensis str. Arkansas] gi|115502529|sp|Q2GGD7|NUOI_EHRCR RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|67999432|gb|EAM86073.1| NADH-quinone oxidoreductase, chain I [Ehrlichia chaffeensis str. Sapulpa] gi|88599196|gb|ABD44665.1| NADH dehydrogenase I, I subunit [Ehrlichia chaffeensis str. Arkansas] Length = 169 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 101/145 (69%), Positives = 114/145 (78%), Gaps = 1/145 (0%) Query: 18 GAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA 77 ++ LRY FK K T+NYP EKG S RFRGEHALR+Y NGEERCIACKLCEAICPAQA Sbjct: 25 RGMYITLRYMFKPKVTLNYPLEKGPLSTRFRGEHALRKYKNGEERCIACKLCEAICPAQA 84 Query: 78 ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 ITIE+ R G+RRTVRYDIDM KCIYCG CQEACPVDAIVEGPNFE+ATETR+EL Y+ Sbjct: 85 ITIEAQERDD-GSRRTVRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEYATETREELMYN 143 Query: 138 KERLLNNGDRWESEIVRNIVTDSPY 162 K +LL+NG WE I I +S + Sbjct: 144 KSKLLHNGQIWEEAIDLRIKKNSQF 168 >gi|91776405|ref|YP_546161.1| NADH dehydrogenase subunit I [Methylobacillus flagellatus KT] gi|123078791|sp|Q1GZL7|NUOI_METFK RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|91710392|gb|ABE50320.1| NADH dehydrogenase subunit I [Methylobacillus flagellatus KT] Length = 163 Score = 151 bits (381), Expect = 3e-35, Method: Composition-based stats. Identities = 88/160 (55%), Positives = 107/160 (66%), Gaps = 1/160 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + + L E V L RYFF K T+ +P E+ SPRFRG HALRRYPNGEERC Sbjct: 5 IKELFASFMLLELVKGMALTGRYFFARKVTVQFPEERTPISPRFRGLHALRRYPNGEERC 64 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEA+CPA AITIES R D TRRT RYDID+ KCI+CG C+E+CPVD+IVE Sbjct: 65 IACKLCEAVCPAMAITIESEQR-EDNTRRTTRYDIDLTKCIFCGFCEESCPVDSIVETRI 123 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 F++ E R +L Y K LL GD++E +I + D+ YR Sbjct: 124 FDYHGEKRGDLIYTKPMLLAVGDKYEEQIAADRAADARYR 163 >gi|306817876|ref|ZP_07451615.1| NADH-quinone oxidoreductase subunit I [Mobiluncus mulieris ATCC 35239] gi|304649355|gb|EFM46641.1| NADH-quinone oxidoreductase subunit I [Mobiluncus mulieris ATCC 35239] Length = 291 Score = 151 bits (381), Expect = 3e-35, Method: Composition-based stats. Identities = 53/148 (35%), Positives = 80/148 (54%), Gaps = 7/148 (4%) Query: 2 RIFRCNVSFLFLKEF--VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59 +++ ++ V F + R FF+ T +PFEK T PR+ G H L RYP+G Sbjct: 41 KLWEPTKKGFIAEQLKAVAGFGVTFRNFFRPYVTEQWPFEKVPTQPRYHGRHQLNRYPDG 100 Query: 60 EERCIACKLCEAICPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 E+CI C+LC CPA AI +E + G R Y I+ ++CI+CG+C EACP Sbjct: 101 LEKCIGCELCAWACPADAIYVEAASNTPEAQHSPGERYGRVYQINYLRCIFCGMCTEACP 160 Query: 115 VDAIVEGPNFEFATETRQELYYDKERLL 142 A+ ++E + R++L Y+K+ LL Sbjct: 161 TRALTMSNDYEIWDDNREDLIYEKDELL 188 >gi|269958730|ref|YP_003328517.1| NADH dehydrogenase subunit I [Anaplasma centrale str. Israel] gi|269848559|gb|ACZ49203.1| NADH dehydrogenase subunit I [Anaplasma centrale str. Israel] Length = 160 Score = 151 bits (380), Expect = 4e-35, Method: Composition-based stats. Identities = 103/146 (70%), Positives = 113/146 (77%), Gaps = 1/146 (0%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V F L L FK K T+ YPFEKG S RFRGEHALRRY +GEERCIACKLCEAICPAQ Sbjct: 15 VRGFLLTLVSMFKPKVTLRYPFEKGPLSTRFRGEHALRRYDDGEERCIACKLCEAICPAQ 74 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 AITIE+ R G+RRTVRYDIDM KCIYCG CQEACPVDAIVEGPNFE+ATETR+EL Y Sbjct: 75 AITIEAEERDD-GSRRTVRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEYATETREELMY 133 Query: 137 DKERLLNNGDRWESEIVRNIVTDSPY 162 +KE+LL NGD WE + I + Y Sbjct: 134 NKEKLLCNGDVWEEALDFRIRKNKLY 159 >gi|227874592|ref|ZP_03992755.1| NADH dehydrogenase subunit I [Mobiluncus mulieris ATCC 35243] gi|227844801|gb|EEJ54947.1| NADH dehydrogenase subunit I [Mobiluncus mulieris ATCC 35243] Length = 291 Score = 150 bits (379), Expect = 5e-35, Method: Composition-based stats. Identities = 53/148 (35%), Positives = 80/148 (54%), Gaps = 7/148 (4%) Query: 2 RIFRCNVSFLFLKEF--VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59 +++ ++ V F + R FF+ T +PFEK T PR+ G H L RYP+G Sbjct: 41 KLWEPTKKGFIGEQLKAVAGFGVTFRNFFRPYVTEQWPFEKVPTQPRYHGRHQLNRYPDG 100 Query: 60 EERCIACKLCEAICPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 E+CI C+LC CPA AI +E + G R Y I+ ++CI+CG+C EACP Sbjct: 101 LEKCIGCELCAWACPADAIYVEAASNTPEAQHSPGERYGRVYQINYLRCIFCGMCTEACP 160 Query: 115 VDAIVEGPNFEFATETRQELYYDKERLL 142 A+ ++E + R++L Y+K+ LL Sbjct: 161 TRALTMSNDYEIWDDNREDLIYEKDELL 188 >gi|307701294|ref|ZP_07638315.1| NADH-quinone oxidoreductase, chain I [Mobiluncus mulieris FB024-16] gi|307613455|gb|EFN92703.1| NADH-quinone oxidoreductase, chain I [Mobiluncus mulieris FB024-16] Length = 291 Score = 150 bits (379), Expect = 5e-35, Method: Composition-based stats. Identities = 53/148 (35%), Positives = 80/148 (54%), Gaps = 7/148 (4%) Query: 2 RIFRCNVSFLFLKEF--VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59 +++ ++ V F + R FF+ T +PFEK T PR+ G H L RYP+G Sbjct: 41 KLWEPTKKGFIGEQLKAVAGFGVTFRNFFRPYVTEQWPFEKVPTQPRYHGRHQLNRYPDG 100 Query: 60 EERCIACKLCEAICPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 E+CI C+LC CPA AI +E + G R Y I+ ++CI+CG+C EACP Sbjct: 101 LEKCIGCELCAWACPADAIYVEAASNTPEAQHSPGERYGRVYQINYLRCIFCGMCTEACP 160 Query: 115 VDAIVEGPNFEFATETRQELYYDKERLL 142 A+ ++E + R++L Y+K+ LL Sbjct: 161 TRALTMSNDYEIWDDNREDLIYEKDELL 188 >gi|148244397|ref|YP_001219091.1| NADH dehydrogenase subunit I [Candidatus Vesicomyosocius okutanii HA] gi|156633542|sp|A5CXG5|NUOI_VESOH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|146326224|dbj|BAF61367.1| NADH dehydrogenase I chain I [Candidatus Vesicomyosocius okutanii HA] Length = 163 Score = 150 bits (379), Expect = 5e-35, Method: Composition-based stats. Identities = 82/162 (50%), Positives = 101/162 (62%), Gaps = 1/162 (0%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 + + L E + + K T+ +P E+ SPRFRG HALRRYPNGEE Sbjct: 3 KKLNKLIKNFTLNELRTGLKVTAKELVNKKITVQFPEERTPISPRFRGLHALRRYPNGEE 62 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLCEA+CPA AITIES R GTRRT +YDID+ KCI+CG C+EACPVDAIVE Sbjct: 63 RCIACKLCEAVCPANAITIESKMRDD-GTRRTTQYDIDLFKCIFCGFCEEACPVDAIVET 121 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 F++ E+RQ KERLL G + E I + D+ Y+ Sbjct: 122 QIFDYVFESRQGSIMTKERLLEVGSQNEQVINQTKFEDAKYK 163 >gi|269977608|ref|ZP_06184575.1| NADH-quinone oxidoreductase subunits h/i [Mobiluncus mulieris 28-1] gi|269934211|gb|EEZ90778.1| NADH-quinone oxidoreductase subunits h/i [Mobiluncus mulieris 28-1] Length = 291 Score = 150 bits (379), Expect = 6e-35, Method: Composition-based stats. Identities = 53/148 (35%), Positives = 80/148 (54%), Gaps = 7/148 (4%) Query: 2 RIFRCNVSFLFLKEF--VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59 +++ ++ V F + R FF+ T +PFEK T PR+ G H L RYP+G Sbjct: 41 KLWEPTKKGFIGEQLKAVAGFGVTFRNFFRPYVTEQWPFEKVPTQPRYHGRHQLNRYPDG 100 Query: 60 EERCIACKLCEAICPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 E+CI C+LC CPA AI +E + G R Y I+ ++CI+CG+C EACP Sbjct: 101 LEKCIGCELCAWACPADAIYVEAASNTPEAQHSPGERYGRVYQINYLRCIFCGMCTEACP 160 Query: 115 VDAIVEGPNFEFATETRQELYYDKERLL 142 A+ ++E + R++L Y+K+ LL Sbjct: 161 TRALTMSNDYEIWDDNREDLIYEKDELL 188 >gi|300120025|emb|CBK19579.2| subunit NuoI (NDUFS8) [Blastocystis hominis] Length = 204 Score = 150 bits (378), Expect = 7e-35, Method: Composition-based stats. Identities = 91/162 (56%), Positives = 113/162 (69%), Gaps = 1/162 (0%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 ++ + +LFL + ++ + + K TIN+P EK + SPR RGEH LRRY +GEE Sbjct: 44 KMLERSCQYLFLTDLFRGLWVSVISMCREKLTINFPHEKVTISPRMRGEHCLRRYASGEE 103 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIAC+LCEAICPAQ I IE+ R G RRT RYDID+ +CI+CG CQEACPVDAIVE Sbjct: 104 RCIACRLCEAICPAQVINIEAEMRPD-GLRRTTRYDIDLSRCIFCGYCQEACPVDAIVEN 162 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 P EFA E+R+EL YDK +LL+NGD WE + NI TD YR Sbjct: 163 PLLEFAKESREELMYDKAKLLHNGDMWEPILATNIATDIMYR 204 >gi|54024629|ref|YP_118871.1| NADH dehydrogenase subunit H [Nocardia farcinica IFM 10152] gi|81680061|sp|Q5YWD4|NUOHI_NOCFA RecName: Full=NADH-quinone oxidoreductase subunits H/I; AltName: Full=NADH dehydrogenase I subunits H/I; AltName: Full=NDH-1 subunit H/I gi|54016137|dbj|BAD57507.1| putative NADH dehydrogenase I chain H [Nocardia farcinica IFM 10152] Length = 597 Score = 149 bits (376), Expect = 1e-34, Method: Composition-based stats. Identities = 54/136 (39%), Positives = 74/136 (54%), Gaps = 5/136 (3%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 L E + F + FK T YP +K T+PR+ G H L R+P+G E+CI C+LC Sbjct: 415 LLEPLAGFAVTAATMFKKPNTEFYPEQKVPTAPRYHGRHQLNRHPDGLEKCIGCELCAWA 474 Query: 73 CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CPA AI +E R G R Y I+ ++CI CGLC EACP A+ ++E Sbjct: 475 CPADAIYVEGADNTEDERYSPGERYGRVYQINYLRCIGCGLCIEACPTRALTMTNDYELT 534 Query: 128 TETRQELYYDKERLLN 143 + R +L Y+K+RLL Sbjct: 535 DDNRADLIYEKDRLLA 550 >gi|73666986|ref|YP_303002.1| NADH dehydrogenase subunit I [Ehrlichia canis str. Jake] gi|115502528|sp|Q3YSA1|NUOI_EHRCJ RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|72394127|gb|AAZ68404.1| NADH dehydrogenase subunit I [Ehrlichia canis str. Jake] Length = 167 Score = 147 bits (370), Expect = 6e-34, Method: Composition-based stats. Identities = 101/145 (69%), Positives = 114/145 (78%), Gaps = 1/145 (0%) Query: 18 GAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA 77 ++ LRY FK K T+NYP EKG S RFRGEHALR+Y NGEERCIACKLCEAICPAQA Sbjct: 23 KGMYITLRYMFKPKVTLNYPLEKGPLSTRFRGEHALRKYKNGEERCIACKLCEAICPAQA 82 Query: 78 ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 ITIE+ R G+RRTVRYDIDM KCIYCG CQEACPVDAIVEGPNFE+ATETR+EL Y+ Sbjct: 83 ITIEAQERDD-GSRRTVRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEYATETREELMYN 141 Query: 138 KERLLNNGDRWESEIVRNIVTDSPY 162 K +LL+NG WE I I +S + Sbjct: 142 KSKLLHNGQVWEEAIDFRIKKNSQF 166 >gi|269955285|ref|YP_003325074.1| NADH-quinone oxidoreductase subunit I [Xylanimonas cellulosilytica DSM 15894] gi|269303966|gb|ACZ29516.1| NADH-quinone oxidoreductase, chain I [Xylanimonas cellulosilytica DSM 15894] Length = 300 Score = 146 bits (368), Expect = 1e-33, Method: Composition-based stats. Identities = 53/138 (38%), Positives = 70/138 (50%), Gaps = 11/138 (7%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V F + L F+ T YPFEK T R+ G H L RY +G E+CI C+LC CPA Sbjct: 21 VAGFGVTLGSMFRPTVTEQYPFEKVPTPRRYHGRHQLNRYADGLEKCIGCELCAWACPAD 80 Query: 77 AITIESGPRCH-----------DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 AI +E G R Y I+ ++CI+CGLC EACP A+ ++E Sbjct: 81 AIYVEGADNADVLAETGGGQVSPGERYGRVYQINYLRCIFCGLCVEACPTRALTMSNDYE 140 Query: 126 FATETRQELYYDKERLLN 143 A TR + Y+K+ LL Sbjct: 141 LAGPTRAGMIYEKQDLLA 158 >gi|120609958|ref|YP_969636.1| NADH dehydrogenase subunit I [Acidovorax citrulli AAC00-1] gi|326316107|ref|YP_004233779.1| NADH-quinone oxidoreductase subunit I [Acidovorax avenae subsp. avenae ATCC 19860] gi|156632696|sp|A1TLM4|NUOI_ACIAC RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|120588422|gb|ABM31862.1| NADH dehydrogenase subunit I [Acidovorax citrulli AAC00-1] gi|323372943|gb|ADX45212.1| NADH-quinone oxidoreductase, chain I [Acidovorax avenae subsp. avenae ATCC 19860] Length = 171 Score = 145 bits (366), Expect = 2e-33, Method: Composition-based stats. Identities = 88/152 (57%), Positives = 105/152 (69%), Gaps = 1/152 (0%) Query: 12 FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71 L E V L RY F+ K T+ +P EK SPRFRG HALRRY NGEERCIACKLCEA Sbjct: 21 MLVELVKGMALTGRYAFRRKVTVQFPEEKTPLSPRFRGLHALRRYENGEERCIACKLCEA 80 Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 +CPA AITIES R G+RRT RYDID+ KCI+CG C+E+CPVD+IVE E+ E R Sbjct: 81 VCPALAITIESDVRAD-GSRRTTRYDIDLTKCIFCGFCEESCPVDSIVETQILEYHGEKR 139 Query: 132 QELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 +LY+ K+ LL GDR+E+EI D+ YR Sbjct: 140 GDLYFTKDMLLAVGDRYEAEIAAAKAADAKYR 171 >gi|269469176|gb|EEZ80718.1| NADH dehydrogenase I chain I [uncultured SUP05 cluster bacterium] Length = 173 Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats. Identities = 84/170 (49%), Positives = 104/170 (61%), Gaps = 11/170 (6%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + V L E G + + K T+ +P E+ SPRFRG HALRRYPNGEERC Sbjct: 5 IKKLVKDFSLSELRGGMKITAKELINKKITVQFPEERTPISPRFRGLHALRRYPNGEERC 64 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEA+CPA AITIES R GTRRT +YDID+ KCI+CG C+EACPVDAIVE Sbjct: 65 IACKLCEAVCPANAITIESEMRDD-GTRRTTQYDIDLFKCIFCGFCEEACPVDAIVETQI 123 Query: 124 FEFATE-TRQEL---------YYDKERLLNNGDRWESEIVRNIVTDSPYR 163 F++A +R KE+LL+ G++ E I + + DS YR Sbjct: 124 FDYAFVGSRDGNDNLQGQFGSVITKEQLLDVGNKNEKTINQTKLEDSKYR 173 >gi|145541694|ref|XP_001456535.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124424347|emb|CAK89138.1| unnamed protein product [Paramecium tetraurelia] Length = 236 Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats. Identities = 95/156 (60%), Positives = 117/156 (75%), Gaps = 2/156 (1%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLR-YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 ++ E++ F+ C Y F+ + TINYP+EKG SP FRGEHALRRYP GEE Sbjct: 75 VWETAYQNFTQPEYLYHFWFCGVLYCFEPEWTINYPYEKGPLSPLFRGEHALRRYPTGEE 134 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLC++ CPA+AITIE+ PR + +RRTVRYDIDM KCIYCG CQEACPVDAIVEG Sbjct: 135 RCIACKLCQSACPARAITIETEPRPDN-SRRTVRYDIDMTKCIYCGFCQEACPVDAIVEG 193 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIV 157 PN+E+ T ++L+YDK +LL NGD+WE +I RNI Sbjct: 194 PNYEYTTYQHEDLFYDKFKLLENGDKWEPQIARNIE 229 >gi|145508706|ref|XP_001440297.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|145535448|ref|XP_001453457.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124407514|emb|CAK72900.1| unnamed protein product [Paramecium tetraurelia] gi|124421179|emb|CAK86060.1| unnamed protein product [Paramecium tetraurelia] Length = 236 Score = 144 bits (363), Expect = 4e-33, Method: Composition-based stats. Identities = 95/156 (60%), Positives = 117/156 (75%), Gaps = 2/156 (1%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLR-YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 ++ E++ F+ C Y F+ + TINYP+EKG SP FRGEHALRRYP GEE Sbjct: 75 VWETAYQNFTQPEYLYHFWFCGVLYCFEPEWTINYPYEKGPLSPLFRGEHALRRYPTGEE 134 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLC++ CPA+AITIE+ PR + +RRTVRYDIDM KCIYCG CQEACPVDAIVEG Sbjct: 135 RCIACKLCQSACPARAITIETEPRPDN-SRRTVRYDIDMTKCIYCGFCQEACPVDAIVEG 193 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIV 157 PN+E+ T ++L+YDK +LL NGD+WE +I RNI Sbjct: 194 PNYEYTTYQHEDLFYDKFKLLENGDKWEPQIARNIE 229 >gi|145536107|ref|XP_001453781.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124421514|emb|CAK86384.1| unnamed protein product [Paramecium tetraurelia] Length = 236 Score = 144 bits (363), Expect = 4e-33, Method: Composition-based stats. Identities = 95/156 (60%), Positives = 117/156 (75%), Gaps = 2/156 (1%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLR-YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 ++ E++ F+ C Y F+ + TINYP+EKG SP FRGEHALRRYP GEE Sbjct: 75 VWETAYQNFTQPEYLYHFWFCGVLYCFEPEWTINYPYEKGPLSPLFRGEHALRRYPTGEE 134 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCIACKLC++ CPA+AITIE+ PR + +RRTVRYDIDM KCIYCG CQEACPVDAIVEG Sbjct: 135 RCIACKLCQSACPARAITIETEPRPDN-SRRTVRYDIDMTKCIYCGFCQEACPVDAIVEG 193 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIV 157 PN+E+ T ++L+YDK +LL NGD+WE +I RNI Sbjct: 194 PNYEYTTYQHEDLFYDKFKLLENGDKWEPQIARNIE 229 >gi|302543436|ref|ZP_07295778.1| NADH-quinone oxidoreductase, I subunit [Streptomyces hygroscopicus ATCC 53653] gi|302461054|gb|EFL24147.1| NADH-quinone oxidoreductase, I subunit [Streptomyces himastatinicus ATCC 53653] Length = 221 Score = 143 bits (361), Expect = 7e-33, Method: Composition-based stats. Identities = 57/136 (41%), Positives = 73/136 (53%), Gaps = 5/136 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V F + + FK + T YP EK T+PRF G H L R+P+G E+CI C+LC CPA Sbjct: 22 VAGFGVTFKAMFKKRLTEQYPEEKKPTAPRFHGRHQLNRHPDGLEKCIGCELCAWACPAD 81 Query: 77 AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E R G R Y I+ ++CI CGLC EACP A+ +E A TR Sbjct: 82 AIYVEGADNTEEERYSPGERYGRVYQINYLRCILCGLCVEACPTRALTMTNEYELADRTR 141 Query: 132 QELYYDKERLLNNGDR 147 + L Y KE LL + Sbjct: 142 ESLIYTKEELLAGLED 157 >gi|332669457|ref|YP_004452465.1| NADH-quinone oxidoreductase subunit I [Cellulomonas fimi ATCC 484] gi|332338495|gb|AEE45078.1| NADH-quinone oxidoreductase, chain I [Cellulomonas fimi ATCC 484] Length = 283 Score = 143 bits (360), Expect = 8e-33, Method: Composition-based stats. Identities = 52/132 (39%), Positives = 69/132 (52%), Gaps = 5/132 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 VG F + L F+ T YP EK PR+ G H L RY +G E+CI C+LC CPA Sbjct: 72 VGGFGVTLSNMFRPTVTEQYPSEKVPAKPRYHGRHQLNRYADGLEKCIGCELCAWACPAD 131 Query: 77 AITIESGPRCH-----DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E G R Y I+ ++CI+CGLC EACP A+ +E A TR Sbjct: 132 AIYVEGADNTPDAQFSPGERYGRVYQINYLRCIFCGLCIEACPTRALTMTNEYELAGPTR 191 Query: 132 QELYYDKERLLN 143 + ++K+ LL Sbjct: 192 AGMIWEKQDLLA 203 >gi|124515808|gb|EAY57317.1| NADH dehydrogenase, chain I [Leptospirillum rubarum] Length = 186 Score = 142 bits (359), Expect = 1e-32, Method: Composition-based stats. Identities = 59/158 (37%), Positives = 84/158 (53%), Gaps = 1/158 (0%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 + + + E + L + FK K T+ YP EK + +RG RRY NG+E Sbjct: 1 MTLKSLLKSVLFTEIMQGLKLTFTHMFKKKITVQYPHEKLELADGYRGFIVHRRYENGQE 60 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVR-YDIDMIKCIYCGLCQEACPVDAIVE 120 RC+ C LCEAICPA+AI + RR + Y +D +CI+CG C ACPV+A+ Sbjct: 61 RCVGCDLCEAICPAKAIRVVGDIHPEFPERRFAKEYTLDFTRCIFCGFCVVACPVNALSM 120 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158 F ++ TR+ L Y K++LL GDR ESE + + Sbjct: 121 TKEFAHSSFTREGLIYSKDQLLALGDRCESESIAYLKV 158 >gi|269794081|ref|YP_003313536.1| NADH dehydrogenase subunit I [Sanguibacter keddieii DSM 10542] gi|269096266|gb|ACZ20702.1| NADH dehydrogenase subunit I [Sanguibacter keddieii DSM 10542] Length = 252 Score = 142 bits (358), Expect = 2e-32, Method: Composition-based stats. Identities = 54/135 (40%), Positives = 70/135 (51%), Gaps = 8/135 (5%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V F + F+ T YPFEK T PR+ G H L RY +G E+CI C+LC CPA Sbjct: 39 VAGFGVTFSSMFRPTVTEQYPFEKVPTKPRYHGRHQLNRYADGLEKCIGCELCAWACPAD 98 Query: 77 AITIE--------SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 AI +E G G R Y I+ ++CI+CGLC EACP A+ +E Sbjct: 99 AIYVEGSSNAELPDGGHRSPGERYGSVYQINYLRCIFCGLCIEACPTRALTMTNEYELTG 158 Query: 129 ETRQELYYDKERLLN 143 TR+ L ++KE LL Sbjct: 159 PTREGLIWEKEDLLA 173 >gi|289207901|ref|YP_003459967.1| NADH-quinone oxidoreductase, chain I [Thioalkalivibrio sp. K90mix] gi|288943532|gb|ADC71231.1| NADH-quinone oxidoreductase, chain I [Thioalkalivibrio sp. K90mix] Length = 162 Score = 142 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 86/138 (62%), Positives = 98/138 (71%), Gaps = 1/138 (0%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 Y K T+ YP EK SPRFRG HALRRYPNGEERCIACKLCEA+CPA AITI+S R Sbjct: 26 YLLSRKFTVQYPDEKTPMSPRFRGLHALRRYPNGEERCIACKLCEAVCPALAITIDSEER 85 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNG 145 GTRRT RYDID+ KCI+CG C+EACPVD+IVE FE+ E R E K++LL G Sbjct: 86 AD-GTRRTTRYDIDLFKCIFCGFCEEACPVDSIVETHIFEYHFENRGEQIMTKDKLLAIG 144 Query: 146 DRWESEIVRNIVTDSPYR 163 DR+E EI D+PYR Sbjct: 145 DRFEKEIAEARAIDAPYR 162 >gi|206602052|gb|EDZ38534.1| NADH dehydrogenase, chain I [Leptospirillum sp. Group II '5-way CG'] Length = 186 Score = 142 bits (357), Expect = 2e-32, Method: Composition-based stats. Identities = 59/158 (37%), Positives = 84/158 (53%), Gaps = 1/158 (0%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 + + + E + L + FK K T+ YP EK + +RG RRY NG+E Sbjct: 1 MTLKSLLKSVLFTEIMQGLKLTFTHMFKKKITVQYPHEKLELADGYRGFIVHRRYENGQE 60 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVR-YDIDMIKCIYCGLCQEACPVDAIVE 120 RC+ C LCEAICPA+AI + RR + Y +D +CI+CG C ACPV+A+ Sbjct: 61 RCVGCDLCEAICPAKAIRVVGDIHPEIPERRYAKEYTLDFTRCIFCGFCVVACPVNALSM 120 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158 F ++ TR+ L Y K++LL GDR ESE + + Sbjct: 121 TKEFAHSSFTREGLIYSKDQLLTLGDRCESESIAYLKV 158 >gi|298346126|ref|YP_003718813.1| NADH dehydrogenase subunit I [Mobiluncus curtisii ATCC 43063] gi|298236187|gb|ADI67319.1| NADH dehydrogenase subunit I [Mobiluncus curtisii ATCC 43063] Length = 245 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 53/131 (40%), Positives = 78/131 (59%), Gaps = 5/131 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V F + R FF+ T YPFEK T PR+ G H L RYP+G E+C+ C+LC CPA Sbjct: 54 VAGFGVTFRNFFRPYVTEQYPFEKVPTQPRYHGRHQLNRYPDGLEKCVGCELCAWACPAD 113 Query: 77 AITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E+ + G R Y+I+ ++CI+CG+C EACP A+ ++E + R Sbjct: 114 AIYVEAAANTPEAQYSAGERYGRVYEINYLRCIFCGMCIEACPTRALTMSNDYEIWDDNR 173 Query: 132 QELYYDKERLL 142 ++L ++K+RLL Sbjct: 174 EDLIFEKDRLL 184 >gi|52842979|ref|YP_096778.1| NADH dehydrogenase subunit I [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|54295610|ref|YP_128025.1| NADH dehydrogenase subunit I [Legionella pneumophila str. Lens] gi|81376647|sp|Q5ZRU6|NUOI_LEGPH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|81679125|sp|Q5WT28|NUOI_LEGPL RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|52630090|gb|AAU28831.1| NADH dehydrogenase I, I subunit [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|53755442|emb|CAH16938.1| NADH-quinone oxidoreductase chain I [Legionella pneumophila str. Lens] Length = 166 Score = 141 bits (356), Expect = 3e-32, Method: Composition-based stats. Identities = 80/141 (56%), Positives = 97/141 (68%), Gaps = 1/141 (0%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 ++YFF+ K T+ +P E+ SPRFRG ALRRYPNGEERCIACKLCEA+CPA AITIES Sbjct: 27 TVKYFFRKKITVQFPEEQTPLSPRFRGLLALRRYPNGEERCIACKLCEAVCPALAITIES 86 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLL 142 R G+RRT RYDIDM KCI CGLC+E+CPVD+IV P + R + KE+LL Sbjct: 87 EQRDD-GSRRTTRYDIDMFKCINCGLCEESCPVDSIVVTPIHHYHISERGQNIMTKEKLL 145 Query: 143 NNGDRWESEIVRNIVTDSPYR 163 GD ES++ + D YR Sbjct: 146 AVGDLMESQLAADRAADEKYR 166 >gi|304390114|ref|ZP_07372068.1| NADH-quinone oxidoreductase subunit I [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326596|gb|EFL93840.1| NADH-quinone oxidoreductase subunit I [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 245 Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats. Identities = 53/131 (40%), Positives = 78/131 (59%), Gaps = 5/131 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V F + R FF+ T YPFEK T PR+ G H L RYP+G E+C+ C+LC CPA Sbjct: 54 VAGFGVTFRNFFRPYVTEQYPFEKVPTQPRYHGRHQLNRYPDGLEKCVGCELCAWACPAD 113 Query: 77 AITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E+ + G R Y+I+ ++CI+CG+C EACP A+ ++E + R Sbjct: 114 AIYVEAAANTPEAQYSAGERYGRVYEINYLRCIFCGMCIEACPTRALTMSNDYEIWDDNR 173 Query: 132 QELYYDKERLL 142 ++L ++K+RLL Sbjct: 174 EDLIFEKDRLL 184 >gi|315657371|ref|ZP_07910253.1| NADH-quinone oxidoreductase subunit I [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315491843|gb|EFU81452.1| NADH-quinone oxidoreductase subunit I [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 245 Score = 141 bits (355), Expect = 3e-32, Method: Composition-based stats. Identities = 53/131 (40%), Positives = 78/131 (59%), Gaps = 5/131 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V F + R FF+ T YPFEK T PR+ G H L RYP+G E+C+ C+LC CPA Sbjct: 54 VAGFGVTFRNFFRPYVTEQYPFEKVPTQPRYHGRHQLNRYPDGLEKCVGCELCAWACPAD 113 Query: 77 AITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E+ + G R Y+I+ ++CI+CG+C EACP A+ ++E + R Sbjct: 114 AIYVEAAANTPEAQYSAGERYGRVYEINYLRCIFCGMCIEACPTRALTMSNDYEIWDDNR 173 Query: 132 QELYYDKERLL 142 ++L ++K+RLL Sbjct: 174 EDLIFEKDRLL 184 >gi|297159516|gb|ADI09228.1| NADH dehydrogenase subunit I [Streptomyces bingchenggensis BCW-1] Length = 203 Score = 141 bits (355), Expect = 4e-32, Method: Composition-based stats. Identities = 57/136 (41%), Positives = 73/136 (53%), Gaps = 5/136 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V F + + FK + T YP EK T+PRF G H L R+P+G E+CI C+LC CPA Sbjct: 8 VAGFGVTFKAMFKKRLTEQYPEEKKPTAPRFHGRHQLNRHPDGLEKCIGCELCAWACPAD 67 Query: 77 AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E R G R Y I+ ++CI CGLC EACP A+ +E A TR Sbjct: 68 AIYVEGADNTEEERYSPGERYGRVYQINYLRCILCGLCVEACPTRALTMTNEYELADRTR 127 Query: 132 QELYYDKERLLNNGDR 147 + L Y KE LL + Sbjct: 128 ESLIYTKEELLAGLEE 143 >gi|288917191|ref|ZP_06411560.1| NADH-quinone oxidoreductase, chain I [Frankia sp. EUN1f] gi|288351382|gb|EFC85590.1| NADH-quinone oxidoreductase, chain I [Frankia sp. EUN1f] Length = 223 Score = 141 bits (354), Expect = 4e-32, Method: Composition-based stats. Identities = 54/131 (41%), Positives = 72/131 (54%), Gaps = 5/131 (3%) Query: 18 GAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA 77 F + FK TT YP K T+PRF G H L R+P+G E+C+ C+LC CPA A Sbjct: 8 KGFGVTFSTMFKKPTTEQYPEYKKETAPRFHGRHQLNRHPDGLEKCVGCELCAWACPADA 67 Query: 78 ITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 I +E R G R Y I+ ++CI CGLC EACP A+ +E A ++RQ Sbjct: 68 IYVEGADNTDEERYSPGERYGRVYQINYLRCILCGLCIEACPTRALTMSNEYELADDSRQ 127 Query: 133 ELYYDKERLLN 143 +L + KE+LL Sbjct: 128 DLIFTKEQLLA 138 >gi|54298764|ref|YP_125133.1| NADH dehydrogenase subunit I [Legionella pneumophila str. Paris] gi|148361094|ref|YP_001252301.1| NADH dehydrogenase I subunit I [Legionella pneumophila str. Corby] gi|296108424|ref|YP_003620125.1| NADH dehydrogenase I chain I [Legionella pneumophila 2300/99 Alcoy] gi|81679378|sp|Q5X1B5|NUOI_LEGPA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|166918793|sp|A5IHV5|NUOI_LEGPC RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|53752549|emb|CAH13981.1| NADH-quinone oxidoreductase chain I [Legionella pneumophila str. Paris] gi|148282867|gb|ABQ56955.1| NADH dehydrogenase I, I subunit [Legionella pneumophila str. Corby] gi|295650326|gb|ADG26173.1| NADH dehydrogenase I chain I [Legionella pneumophila 2300/99 Alcoy] Length = 166 Score = 141 bits (354), Expect = 4e-32, Method: Composition-based stats. Identities = 80/141 (56%), Positives = 98/141 (69%), Gaps = 1/141 (0%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 ++YFF+ K T+ +P E+ SPRFRG ALRRYPNGEERCIACKLCEA+CPA AITIES Sbjct: 27 TVKYFFRKKITVQFPEEQTPLSPRFRGLLALRRYPNGEERCIACKLCEAVCPALAITIES 86 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLL 142 R DG+RRT RYDIDM KCI CGLC+E+CPVD+IV P + R + KE+LL Sbjct: 87 EQR-EDGSRRTTRYDIDMFKCINCGLCEESCPVDSIVVTPIHHYHISERGQNIMTKEKLL 145 Query: 143 NNGDRWESEIVRNIVTDSPYR 163 GD E+++ + D YR Sbjct: 146 AVGDLMETQLAADRAADEKYR 166 >gi|218678471|ref|ZP_03526368.1| NADH dehydrogenase subunit I [Rhizobium etli CIAT 894] Length = 160 Score = 141 bits (354), Expect = 4e-32, Method: Composition-based stats. Identities = 107/124 (86%), Positives = 114/124 (91%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 ++S LFLKEF GAFFL +RYFF+ K TINYPFEKG SPRFRGEHALRRYPNGEERCIA Sbjct: 3 SSISSLFLKEFFGAFFLSMRYFFRQKATINYPFEKGPVSPRFRGEHALRRYPNGEERCIA 62 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CKLCEAICPAQAITIE+GPR +DGTRRTVRYDIDM+KCIYCG CQEACPVDAIVEGPNFE Sbjct: 63 CKLCEAICPAQAITIEAGPRRNDGTRRTVRYDIDMVKCIYCGFCQEACPVDAIVEGPNFE 122 Query: 126 FATE 129 FATE Sbjct: 123 FATE 126 >gi|315654705|ref|ZP_07907611.1| NADH-quinone oxidoreductase subunit I [Mobiluncus curtisii ATCC 51333] gi|315491169|gb|EFU80788.1| NADH-quinone oxidoreductase subunit I [Mobiluncus curtisii ATCC 51333] Length = 245 Score = 141 bits (354), Expect = 4e-32, Method: Composition-based stats. Identities = 53/131 (40%), Positives = 78/131 (59%), Gaps = 5/131 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V F + R FF+ T YPFEK T PR+ G H L RYP+G E+C+ C+LC CPA Sbjct: 54 VAGFGVTFRNFFRPYVTEQYPFEKVPTQPRYHGRHQLNRYPDGLEKCVGCELCAWACPAD 113 Query: 77 AITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E+ + G R Y+I+ ++CI+CG+C EACP A+ ++E + R Sbjct: 114 AIYVEAAANTPEAQYSAGERYGRVYEINYLRCIFCGMCIEACPTRALTMSNDYEIWDDNR 173 Query: 132 QELYYDKERLL 142 ++L ++K+RLL Sbjct: 174 EDLIFEKDRLL 184 >gi|307328629|ref|ZP_07607802.1| NADH-quinone oxidoreductase, chain I [Streptomyces violaceusniger Tu 4113] gi|306885741|gb|EFN16754.1| NADH-quinone oxidoreductase, chain I [Streptomyces violaceusniger Tu 4113] Length = 207 Score = 140 bits (353), Expect = 6e-32, Method: Composition-based stats. Identities = 56/136 (41%), Positives = 72/136 (52%), Gaps = 5/136 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V F + + FK + T YP EK T+PRF G H L R+P+G E+CI C+LC CPA Sbjct: 8 VAGFGVTFKAMFKKRLTEQYPEEKKPTAPRFHGRHQLNRHPDGLEKCIGCELCAWACPAD 67 Query: 77 AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E R G R Y I+ ++CI CGLC EACP A+ +E A +R Sbjct: 68 AIYVEGADNTDEERYSPGERYGRVYQINYLRCILCGLCVEACPTRALTMTNEYELADRSR 127 Query: 132 QELYYDKERLLNNGDR 147 L Y KE LL + Sbjct: 128 TSLIYTKEELLAGLED 143 >gi|220904925|ref|YP_002480237.1| NADH-quinone oxidoreductase subunit I [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869224|gb|ACL49559.1| NADH-quinone oxidoreductase, chain I [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 234 Score = 140 bits (352), Expect = 7e-32, Method: Composition-based stats. Identities = 61/148 (41%), Positives = 80/148 (54%), Gaps = 2/148 (1%) Query: 5 RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRY-PNGEERC 63 R + L E L LR+ F+ T YP EK + FRG HAL R +G RC Sbjct: 9 RNWLQTLLQTEIAQGLALTLRHMFRKPVTQQYPDEKPVVAAGFRGRHALVRDAESGGSRC 68 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC C +CP+ I I S R DG+R+ Y ID ++CIYCG C E CPV+AIV Sbjct: 69 VACMRCARVCPSHCIRIRSH-RSVDGSRKVDAYVIDALRCIYCGYCAEVCPVNAIVLTEI 127 Query: 124 FEFATETRQELYYDKERLLNNGDRWESE 151 + +A TRQE +D+ LL N D + +E Sbjct: 128 YAYAGRTRQEFVFDEAHLLRNWDEFAAE 155 >gi|289641419|ref|ZP_06473583.1| NADH-quinone oxidoreductase, chain I [Frankia symbiont of Datisca glomerata] gi|289508755|gb|EFD29690.1| NADH-quinone oxidoreductase, chain I [Frankia symbiont of Datisca glomerata] Length = 200 Score = 140 bits (352), Expect = 8e-32, Method: Composition-based stats. Identities = 54/131 (41%), Positives = 73/131 (55%), Gaps = 5/131 (3%) Query: 18 GAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA 77 F + FK TT YP EK T+PRF G H L R+P+G E+C+ C+LC CPA A Sbjct: 8 KGFGVTFSTMFKKPTTEQYPEEKKPTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPADA 67 Query: 78 ITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 I +E R G R Y I+ ++CI CGLC EACP A+ ++E A ++R Sbjct: 68 IYVEGADNTDEERYSPGERYGRVYQINYLRCILCGLCIEACPTRALTMTNDYELADDSRS 127 Query: 133 ELYYDKERLLN 143 +L + KE+LL Sbjct: 128 DLIFTKEQLLA 138 >gi|254524848|ref|ZP_05136903.1| NADH-quinone oxidoreductase subunit i [Stenotrophomonas sp. SKA14] gi|219722439|gb|EED40964.1| NADH-quinone oxidoreductase subunit i [Stenotrophomonas sp. SKA14] Length = 162 Score = 139 bits (351), Expect = 9e-32, Method: Composition-based stats. Identities = 88/141 (62%), Positives = 100/141 (70%), Gaps = 1/141 (0%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 L+Y FK K T+ YP EK SPRFRG HALRRYPNGEERCIACKLCEA+CPA AITI+S Sbjct: 23 TLKYSFKPKYTMMYPMEKFPQSPRFRGLHALRRYPNGEERCIACKLCEAVCPALAITIDS 82 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLL 142 R DGTRRT RYDID+ KCI+CG C+E+CPVD+IVE E+ E R E K +LL Sbjct: 83 AKR-EDGTRRTTRYDIDLFKCIFCGFCEESCPVDSIVETHILEYHFENRGENIVTKPQLL 141 Query: 143 NNGDRWESEIVRNIVTDSPYR 163 GDR ESEI D+ YR Sbjct: 142 ALGDRLESEIAERRAADAAYR 162 >gi|256831787|ref|YP_003160514.1| NADH-quinone oxidoreductase, chain I [Jonesia denitrificans DSM 20603] gi|256685318|gb|ACV08211.1| NADH-quinone oxidoreductase, chain I [Jonesia denitrificans DSM 20603] Length = 226 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 57/135 (42%), Positives = 74/135 (54%), Gaps = 8/135 (5%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V F + L FF T YPFEK T PR+ G H L RYP+G E+CI C+LC CPA Sbjct: 14 VAGFGVTLNSFFSPTVTEQYPFEKVPTKPRYHGRHQLNRYPDGLEKCIGCELCAWACPAD 73 Query: 77 AITIESGPRCH--------DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 AI +E G G R Y I+ ++CI+CGLC EACP A+ ++E A Sbjct: 74 AIYVEGGSNAELPDGAHMSPGERYGKVYQINYLRCIFCGLCIEACPTRALTMTNDYELAG 133 Query: 129 ETRQELYYDKERLLN 143 TR+ + Y+K+ LL Sbjct: 134 PTREGMIYEKQDLLA 148 >gi|71275682|ref|ZP_00651967.1| NADH-quinone oxidoreductase, chain I [Xylella fastidiosa Dixon] gi|71897774|ref|ZP_00680000.1| NADH-quinone oxidoreductase, chain I [Xylella fastidiosa Ann-1] gi|71897862|ref|ZP_00680088.1| NADH-quinone oxidoreductase, chain I [Xylella fastidiosa Ann-1] gi|170729497|ref|YP_001774930.1| NADH dehydrogenase subunit I [Xylella fastidiosa M12] gi|182680813|ref|YP_001828973.1| NADH dehydrogenase subunit I [Xylella fastidiosa M23] gi|71163573|gb|EAO13290.1| NADH-quinone oxidoreductase, chain I [Xylella fastidiosa Dixon] gi|71732329|gb|EAO34383.1| NADH-quinone oxidoreductase, chain I [Xylella fastidiosa Ann-1] gi|71732417|gb|EAO34471.1| NADH-quinone oxidoreductase, chain I [Xylella fastidiosa Ann-1] gi|167964290|gb|ACA11300.1| NADH dehydrogenase [Xylella fastidiosa M12] gi|182630923|gb|ACB91699.1| NADH-quinone oxidoreductase, chain I [Xylella fastidiosa M23] Length = 162 Score = 139 bits (351), Expect = 1e-31, Method: Composition-based stats. Identities = 85/141 (60%), Positives = 101/141 (71%), Gaps = 1/141 (0%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 L+Y F+ K T+ YP EK SPRFRG HALRRYPNGEERCIACKLCEA+CPA AITI+S Sbjct: 23 TLKYTFRPKYTVLYPMEKFPQSPRFRGLHALRRYPNGEERCIACKLCEAVCPALAITIDS 82 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLL 142 R DGTRRT RYDID+ KCI+CG C+E+CPVD+IVE E+ E R E K +LL Sbjct: 83 AKR-EDGTRRTTRYDIDLFKCIFCGFCEESCPVDSIVETHILEYHFEKRGENIVTKPQLL 141 Query: 143 NNGDRWESEIVRNIVTDSPYR 163 GDR+E+EI D+ +R Sbjct: 142 AIGDRFEAEIAERRAADAAFR 162 >gi|307579280|gb|ADN63249.1| NADH dehydrogenase subunit I [Xylella fastidiosa subsp. fastidiosa GB514] Length = 158 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 85/141 (60%), Positives = 101/141 (71%), Gaps = 1/141 (0%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 L+Y F+ K T+ YP EK SPRFRG HALRRYPNGEERCIACKLCEA+CPA AITI+S Sbjct: 19 TLKYTFRPKYTVLYPMEKFPQSPRFRGLHALRRYPNGEERCIACKLCEAVCPALAITIDS 78 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLL 142 R DGTRRT RYDID+ KCI+CG C+E+CPVD+IVE E+ E R E K +LL Sbjct: 79 AKR-EDGTRRTTRYDIDLFKCIFCGFCEESCPVDSIVETHILEYHFEKRGENIVTKPQLL 137 Query: 143 NNGDRWESEIVRNIVTDSPYR 163 GDR+E+EI D+ +R Sbjct: 138 AIGDRFEAEIAERRAADAAFR 158 >gi|86739259|ref|YP_479659.1| NADH dehydrogenase subunit I [Frankia sp. CcI3] gi|110287761|sp|Q2JFL2|NUOI_FRASC RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|86566121|gb|ABD09930.1| NADH dehydrogenase subunit I [Frankia sp. CcI3] Length = 217 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 55/131 (41%), Positives = 74/131 (56%), Gaps = 5/131 (3%) Query: 18 GAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA 77 F + FK TT YP EK T+PRF G H L R+P+G E+C+ C+LC CPA A Sbjct: 8 KGFGVTFGTMFKKPTTEQYPEEKKETAPRFHGRHQLNRHPDGLEKCVGCELCAWACPADA 67 Query: 78 ITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 I +E R G R Y I+ ++CI CGLC EACP A+ ++E A ++RQ Sbjct: 68 IYVEGADNTEAERYSPGERYGRVYQINYLRCILCGLCIEACPTRALTMSNDYELADDSRQ 127 Query: 133 ELYYDKERLLN 143 +L + KE+LL Sbjct: 128 DLIFTKEQLLA 138 >gi|239980144|ref|ZP_04702668.1| NADH dehydrogenase subunit I [Streptomyces albus J1074] Length = 232 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 53/132 (40%), Positives = 72/132 (54%), Gaps = 5/132 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V F + + FK + T YP + +T+PRF G H L R+P+G E+C+ C+LC CPA Sbjct: 16 VAGFGVTFKAMFKKRLTEQYPEQPKTTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 75 Query: 77 AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E R G R Y I+ +CI CGLC EACP A+ FE A +R Sbjct: 76 AIYVEGADNTDEERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTNEFELADSSR 135 Query: 132 QELYYDKERLLN 143 + L Y K++LL Sbjct: 136 ENLIYTKDQLLA 147 >gi|269218345|ref|ZP_06162199.1| NADH-quinone oxidoreductase subunit I [Actinomyces sp. oral taxon 848 str. F0332] gi|269212204|gb|EEZ78544.1| NADH-quinone oxidoreductase subunit I [Actinomyces sp. oral taxon 848 str. F0332] Length = 251 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 53/132 (40%), Positives = 72/132 (54%), Gaps = 5/132 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V + + + F+ T YP EK T+PR+ G H L RYP+G ERCI C+LC CPA Sbjct: 30 VAGYGVTISSMFRKPVTEQYPEEKVPTAPRYHGRHQLNRYPDGLERCIGCELCAWACPAD 89 Query: 77 AITIESGPRCH-----DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E+ G R Y I+ ++CI+CG C +ACP A+ +E A TR Sbjct: 90 AIFVEAASNTPDNQVSPGERYGRVYQINYLRCIFCGFCIQACPTRALTMTNEYELAGPTR 149 Query: 132 QELYYDKERLLN 143 + L Y+KE LL Sbjct: 150 EGLVYEKEDLLA 161 >gi|145596568|ref|YP_001160865.1| NADH dehydrogenase subunit I [Salinispora tropica CNB-440] gi|145305905|gb|ABP56487.1| NADH-quinone oxidoreductase, chain I [Salinispora tropica CNB-440] Length = 211 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 51/136 (37%), Positives = 73/136 (53%), Gaps = 5/136 (3%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + F + + FK T +YPF+ +PR+ G H L R+P+G E+CI C+LC Sbjct: 4 ITGTFKGFGVTFSHMFKKVVTTDYPFKPPVAAPRYHGRHILNRHPDGLEKCIGCELCAWA 63 Query: 73 CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CPA AI +E R G R Y I+ +CI+CGLC EACP ++ +E A Sbjct: 64 CPADAIYVEGGDNTEEERFSPGERYASVYQINYARCIFCGLCIEACPTRSLTMSNEYELA 123 Query: 128 TETRQELYYDKERLLN 143 + RQ+L + KE+LL Sbjct: 124 RDNRQDLIFTKEQLLA 139 >gi|311741750|ref|ZP_07715561.1| NADH-quinone oxidoreductase subunit I [Aeromicrobium marinum DSM 15272] gi|311314756|gb|EFQ84662.1| NADH-quinone oxidoreductase subunit I [Aeromicrobium marinum DSM 15272] Length = 187 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 57/140 (40%), Positives = 73/140 (52%), Gaps = 9/140 (6%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + + V F + R FK T YPFEK T+PRF G H L R+P+G E+CI C+LC Sbjct: 11 MWDPVAGFGVTFRTMFKKVVTEQYPFEKLPTAPRFHGRHQLNRWPDGLEKCIGCELCAWA 70 Query: 73 CPAQAITIES---------GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 CPA AI +E R G R Y I+ ++CI CGLC EACP A+ Sbjct: 71 CPADAIYVEGASNDDSDGGDGRYSPGERYGRVYQINYLRCILCGLCIEACPTRALTMTNE 130 Query: 124 FEFATETRQELYYDKERLLN 143 +E A + R +L Y K LL Sbjct: 131 YELADDNRADLIYTKSDLLA 150 >gi|190575270|ref|YP_001973115.1| NADH dehydrogenase subunit I [Stenotrophomonas maltophilia K279a] gi|190013192|emb|CAQ46825.1| putative NADH-ubiquinone dehydrogenase I chain I [Stenotrophomonas maltophilia K279a] Length = 163 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 87/141 (61%), Positives = 100/141 (70%), Gaps = 1/141 (0%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 L+Y FK K T+ YP EK SPRFRG HALRRYPNGEERCIACKLCEA+CPA AITI+S Sbjct: 24 TLKYSFKPKYTMMYPMEKFPQSPRFRGLHALRRYPNGEERCIACKLCEAVCPALAITIDS 83 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLL 142 R DGTRRT RYDID+ KCI+CG C+E+CPVD+IVE E+ E R E K +LL Sbjct: 84 AKR-EDGTRRTTRYDIDLFKCIFCGFCEESCPVDSIVETHILEYHFENRGENIVTKPQLL 142 Query: 143 NNGDRWESEIVRNIVTDSPYR 163 GDR E+EI D+ YR Sbjct: 143 ALGDRLENEIAERRAADAAYR 163 >gi|15836916|ref|NP_297604.1| NADH dehydrogenase subunit I [Xylella fastidiosa 9a5c] gi|28198179|ref|NP_778493.1| NADH dehydrogenase subunit I [Xylella fastidiosa Temecula1] gi|81839557|sp|Q87EP7|NUOI_XYLFT RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|81858452|sp|Q9PGI7|NUOI_XYLFA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|9105136|gb|AAF83124.1|AE003884_9 NADH-ubiquinone oxidoreductase, NQO9 subunit [Xylella fastidiosa 9a5c] gi|28056249|gb|AAO28142.1| NADH-ubiquinone oxidoreductase NQO9 subunit [Xylella fastidiosa Temecula1] Length = 163 Score = 139 bits (349), Expect = 1e-31, Method: Composition-based stats. Identities = 85/141 (60%), Positives = 101/141 (71%), Gaps = 1/141 (0%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 L+Y F+ K T+ YP EK SPRFRG HALRRYPNGEERCIACKLCEA+CPA AITI+S Sbjct: 24 TLKYTFRPKYTVLYPMEKFPQSPRFRGLHALRRYPNGEERCIACKLCEAVCPALAITIDS 83 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLL 142 R DGTRRT RYDID+ KCI+CG C+E+CPVD+IVE E+ E R E K +LL Sbjct: 84 AKR-EDGTRRTTRYDIDLFKCIFCGFCEESCPVDSIVETHILEYHFEKRGENIVTKPQLL 142 Query: 143 NNGDRWESEIVRNIVTDSPYR 163 GDR+E+EI D+ +R Sbjct: 143 AIGDRFEAEIAERRAADAAFR 163 >gi|159039967|ref|YP_001539220.1| NADH dehydrogenase subunit I [Salinispora arenicola CNS-205] gi|157918802|gb|ABW00230.1| NADH-quinone oxidoreductase, chain I [Salinispora arenicola CNS-205] Length = 211 Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 51/132 (38%), Positives = 72/132 (54%), Gaps = 5/132 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 F + + FK T +YPF+ +PR+ G H L R+P+G E+CI C+LC CPA Sbjct: 8 FKGFGVTFSHMFKKVVTTDYPFKPPVAAPRYHGRHILNRHPDGLEKCIGCELCAWACPAD 67 Query: 77 AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E R G R Y I+ +CI+CGLC EACP ++ +E A + R Sbjct: 68 AIYVEGGDNTEEQRFSPGERYASVYQINYARCIFCGLCIEACPTRSLTMSNEYELARDNR 127 Query: 132 QELYYDKERLLN 143 Q+L + KE+LL Sbjct: 128 QDLIFTKEQLLA 139 >gi|312200059|ref|YP_004020120.1| NADH-quinone oxidoreductase chain I [Frankia sp. EuI1c] gi|311231395|gb|ADP84250.1| NADH-quinone oxidoreductase, chain I [Frankia sp. EuI1c] Length = 185 Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 54/134 (40%), Positives = 75/134 (55%), Gaps = 5/134 (3%) Query: 15 EFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP 74 +F F L F+ T +YP +K T+PRF G H L R+P+G E+C+ C+LC CP Sbjct: 5 DFFKGFGLTFGNMFRKPVTESYPEQKKPTAPRFHGRHQLNRHPDGLEKCVGCELCAWACP 64 Query: 75 AQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 A AI +E R G R Y I+ ++CI CGLC EACP A+ G +E A + Sbjct: 65 ADAIYVEGADNTDEERFSPGERYGKVYQINYLRCILCGLCIEACPTRALTMGNEYELADD 124 Query: 130 TRQELYYDKERLLN 143 +R +L + KE+LL Sbjct: 125 SRNDLIFTKEQLLA 138 >gi|148824347|ref|YP_001289101.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis F11] gi|253800187|ref|YP_003033188.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis KZN 1435] gi|254365778|ref|ZP_04981823.1| NADH dehydrogenase I (chain I) nuoI (NADH-ubiquinone oxidoreductase chain I) [Mycobacterium tuberculosis str. Haarlem] gi|289555426|ref|ZP_06444636.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis KZN 605] gi|289746962|ref|ZP_06506340.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis 02_1987] gi|298526627|ref|ZP_07014036.1| NADH-quinone oxidoreductase subunit I [Mycobacterium tuberculosis 94_M4241A] gi|134151291|gb|EBA43336.1| NADH dehydrogenase I (chain I) nuoI (NADH-ubiquinone oxidoreductase chain I) [Mycobacterium tuberculosis str. Haarlem] gi|148722874|gb|ABR07499.1| NADH dehydrogenase I chain I nuoI (NADH-ubiquinone oxidoreductase chain I) [Mycobacterium tuberculosis F11] gi|253321690|gb|ACT26293.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis KZN 1435] gi|289440058|gb|EFD22551.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis KZN 605] gi|289687490|gb|EFD54978.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis 02_1987] gi|298496421|gb|EFI31715.1| NADH-quinone oxidoreductase subunit I [Mycobacterium tuberculosis 94_M4241A] gi|328459924|gb|AEB05347.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis KZN 4207] Length = 218 Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 55/136 (40%), Positives = 73/136 (53%), Gaps = 5/136 (3%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 L + V F + L FK T YP G + R+ G H L RYP+G E+CI C+LC Sbjct: 38 LLDAVAGFGVTLGSMFKKTVTEEYPERPGPVAARYHGRHQLNRYPDGLEKCIGCELCAWA 97 Query: 73 CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CPA AI +E R G R Y I+ ++CI CGLC EACP A+ ++E A Sbjct: 98 CPADAIYVEGADNTEEERFSPGERYGRVYQINYLRCIGCGLCIEACPTRALTMTYDYELA 157 Query: 128 TETRQELYYDKERLLN 143 + R +L Y+K+RLL Sbjct: 158 DDNRADLIYEKDRLLA 173 >gi|31794329|ref|NP_856822.1| NADH dehydrogenase subunit I [Mycobacterium bovis AF2122/97] gi|121639036|ref|YP_979260.1| NADH dehydrogenase subunit I [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|215428609|ref|ZP_03426528.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis T92] gi|215432112|ref|ZP_03430031.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis EAS054] gi|219559199|ref|ZP_03538275.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis T17] gi|224991528|ref|YP_002646217.1| NADH dehydrogenase subunit I [Mycobacterium bovis BCG str. Tokyo 172] gi|260188194|ref|ZP_05765668.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis CPHL_A] gi|260202300|ref|ZP_05769791.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis T46] gi|260206492|ref|ZP_05773983.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis K85] gi|289444718|ref|ZP_06434462.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis T46] gi|289448833|ref|ZP_06438577.1| NADH dehydrogenase I chain I nuoI [Mycobacterium tuberculosis CPHL_A] gi|289571364|ref|ZP_06451591.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis T17] gi|289575865|ref|ZP_06456092.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis K85] gi|289751831|ref|ZP_06511209.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis T92] gi|289755272|ref|ZP_06514650.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis EAS054] gi|81712063|sp|Q7TX57|NUOI_MYCBO RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|156633526|sp|A1KNE9|NUOI_MYCBP RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|254772595|sp|C1AGS0|NUOI_MYCBT RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|31619925|emb|CAD95269.1| PROBABLE NADH DEHYDROGENASE I (CHAIN I) NUOI (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN I) [Mycobacterium bovis AF2122/97] gi|121494684|emb|CAL73165.1| Probable NADH dehydrogenase I (chain I) nuoI [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224774643|dbj|BAH27449.1| NADH dehydrogenase subunit I [Mycobacterium bovis BCG str. Tokyo 172] gi|289417637|gb|EFD14877.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis T46] gi|289421791|gb|EFD18992.1| NADH dehydrogenase I chain I nuoI [Mycobacterium tuberculosis CPHL_A] gi|289540296|gb|EFD44874.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis K85] gi|289545118|gb|EFD48766.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis T17] gi|289692418|gb|EFD59847.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis T92] gi|289695859|gb|EFD63288.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis EAS054] Length = 211 Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 55/136 (40%), Positives = 73/136 (53%), Gaps = 5/136 (3%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 L + V F + L FK T YP G + R+ G H L RYP+G E+CI C+LC Sbjct: 31 LLDAVAGFGVTLGSMFKKTVTEEYPERPGPVAARYHGRHQLNRYPDGLEKCIGCELCAWA 90 Query: 73 CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CPA AI +E R G R Y I+ ++CI CGLC EACP A+ ++E A Sbjct: 91 CPADAIYVEGADNTEEERFSPGERYGRVYQINYLRCIGCGLCIEACPTRALTMTYDYELA 150 Query: 128 TETRQELYYDKERLLN 143 + R +L Y+K+RLL Sbjct: 151 DDNRADLIYEKDRLLA 166 >gi|15610289|ref|NP_217669.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis H37Rv] gi|15842729|ref|NP_337766.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis CDC1551] gi|148663008|ref|YP_001284531.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis H37Ra] gi|167970177|ref|ZP_02552454.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis H37Ra] gi|215405151|ref|ZP_03417332.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis 02_1987] gi|215413020|ref|ZP_03421721.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis 94_M4241A] gi|215447442|ref|ZP_03434194.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis T85] gi|218754932|ref|ZP_03533728.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis GM 1503] gi|254233772|ref|ZP_04927097.1| NADH dehydrogenase I (chain I) nuoI (NADH-ubiquinone oxidoreductase chain I) [Mycobacterium tuberculosis C] gi|254552243|ref|ZP_05142690.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|289759283|ref|ZP_06518661.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis T85] gi|289763336|ref|ZP_06522714.1| NADH dehydrogenase I (chain I) nuoI (NADH-ubiquinone oxidoreductase chain I) [Mycobacterium tuberculosis GM 1503] gi|294995504|ref|ZP_06801195.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis 210] gi|297635796|ref|ZP_06953576.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis KZN 4207] gi|297732793|ref|ZP_06961911.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis KZN R506] gi|313660126|ref|ZP_07817006.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis KZN V2475] gi|6647663|sp|P95173|NUOI_MYCTU RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|156633530|sp|A5U7G9|NUOI_MYCTA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|1781215|emb|CAB06286.1| PROBABLE NADH DEHYDROGENASE I (CHAIN I) NUOI (NADH-UBIQUINONE OXIDOREDUCTASE CHAIN I) [Mycobacterium tuberculosis H37Rv] gi|13883051|gb|AAK47580.1| NADH dehydrogenase I, I subunit [Mycobacterium tuberculosis CDC1551] gi|124599301|gb|EAY58405.1| NADH dehydrogenase I (chain I) nuoI (NADH-ubiquinone oxidoreductase chain I) [Mycobacterium tuberculosis C] gi|148507160|gb|ABQ74969.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis H37Ra] gi|289710842|gb|EFD74858.1| NADH dehydrogenase I (chain I) nuoI (NADH-ubiquinone oxidoreductase chain I) [Mycobacterium tuberculosis GM 1503] gi|289714847|gb|EFD78859.1| NADH dehydrogenase subunit I [Mycobacterium tuberculosis T85] gi|326902623|gb|EGE49556.1| hypothetical protein TBPG_00472 [Mycobacterium tuberculosis W-148] Length = 211 Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 55/136 (40%), Positives = 73/136 (53%), Gaps = 5/136 (3%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 L + V F + L FK T YP G + R+ G H L RYP+G E+CI C+LC Sbjct: 31 LLDAVAGFGVTLGSMFKKTVTEEYPERPGPVAARYHGRHQLNRYPDGLEKCIGCELCAWA 90 Query: 73 CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CPA AI +E R G R Y I+ ++CI CGLC EACP A+ ++E A Sbjct: 91 CPADAIYVEGADNTEEERFSPGERYGRVYQINYLRCIGCGLCIEACPTRALTMTYDYELA 150 Query: 128 TETRQELYYDKERLLN 143 + R +L Y+K+RLL Sbjct: 151 DDNRADLIYEKDRLLA 166 >gi|318057835|ref|ZP_07976558.1| NADH dehydrogenase subunit I [Streptomyces sp. SA3_actG] gi|318077143|ref|ZP_07984475.1| NADH dehydrogenase subunit I [Streptomyces sp. SA3_actF] Length = 253 Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 54/132 (40%), Positives = 71/132 (53%), Gaps = 5/132 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V F + + FK + T YP + T+PRF G H L R+P+G E+C+ C+LC CPA Sbjct: 45 VAGFGVTFKAMFKKRLTEQYPEQPKVTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 104 Query: 77 AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E R G R Y I+ +CI CGLC EACP A+ FE A TR Sbjct: 105 AIYVEGADNTEQERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTSEFELADSTR 164 Query: 132 QELYYDKERLLN 143 + L Y K++LL Sbjct: 165 ENLIYTKDQLLA 176 >gi|297192779|ref|ZP_06910177.1| NADH dehydrogenase subunit I [Streptomyces pristinaespiralis ATCC 25486] gi|297151490|gb|EFH31194.1| NADH dehydrogenase subunit I [Streptomyces pristinaespiralis ATCC 25486] Length = 233 Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 55/136 (40%), Positives = 73/136 (53%), Gaps = 5/136 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V F + + FK + T YP ++ T+PRF G H L R+P+G E+C+ C+LC CPA Sbjct: 36 VAGFGVTFKAMFKKRLTEQYPEQQKVTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 95 Query: 77 AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E R G R Y I+ +CI CGLC EACP A+ FE A +R Sbjct: 96 AIYVEGADNTEEERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTNEFELADSSR 155 Query: 132 QELYYDKERLLNNGDR 147 + L Y KE+LL D Sbjct: 156 ENLIYTKEQLLAGLDE 171 >gi|240169662|ref|ZP_04748321.1| NADH dehydrogenase subunit I [Mycobacterium kansasii ATCC 12478] Length = 181 Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 56/136 (41%), Positives = 75/136 (55%), Gaps = 5/136 (3%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 L + V F + L FK T YP + G +PR+ G H L RYP+G E+CI C+LC Sbjct: 4 LLDAVAGFGVTLGSMFKKTVTEEYPEKPGPVAPRYHGRHQLNRYPDGLEKCIGCELCAWA 63 Query: 73 CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CPA AI +E R G R Y I+ ++CI CGLC EACP A+ ++E A Sbjct: 64 CPADAIYVEGADNTEEARYSPGERYGRVYQINYLRCIGCGLCIEACPTRALTMTNDYEMA 123 Query: 128 TETRQELYYDKERLLN 143 + R +L Y+K+RLL Sbjct: 124 DDNRADLIYEKDRLLA 139 >gi|296268281|ref|YP_003650913.1| NADH-quinone oxidoreductase, chain I [Thermobispora bispora DSM 43833] gi|296091068|gb|ADG87020.1| NADH-quinone oxidoreductase, chain I [Thermobispora bispora DSM 43833] Length = 171 Score = 139 bits (349), Expect = 2e-31, Method: Composition-based stats. Identities = 53/132 (40%), Positives = 72/132 (54%), Gaps = 5/132 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V F + + FK T+ YP EK T+PRF G H L R+P+G E+C+ C+LC CPA Sbjct: 10 VKGFGVTFHHMFKKPVTVQYPEEKRPTAPRFHGRHQLNRWPDGLEKCVGCELCAWACPAD 69 Query: 77 AITIESG-----PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E R G R Y I+ ++CI CGLC EACP A+ +E A +R Sbjct: 70 AIYVEGADNTETERYSPGERYGRVYQINYLRCIMCGLCIEACPTRALTMTNEYELADTSR 129 Query: 132 QELYYDKERLLN 143 + + Y K+ LL Sbjct: 130 EAMIYTKDMLLA 141 >gi|291451999|ref|ZP_06591389.1| NADH-quinone oxidoreductase subunit I 1 [Streptomyces albus J1074] gi|291354948|gb|EFE81850.1| NADH-quinone oxidoreductase subunit I 1 [Streptomyces albus J1074] Length = 244 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 53/132 (40%), Positives = 72/132 (54%), Gaps = 5/132 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V F + + FK + T YP + +T+PRF G H L R+P+G E+C+ C+LC CPA Sbjct: 28 VAGFGVTFKAMFKKRLTEQYPEQPKTTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 87 Query: 77 AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E R G R Y I+ +CI CGLC EACP A+ FE A +R Sbjct: 88 AIYVEGADNTDEERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTNEFELADSSR 147 Query: 132 QELYYDKERLLN 143 + L Y K++LL Sbjct: 148 ENLIYTKDQLLA 159 >gi|229821701|ref|YP_002883227.1| NADH-quinone oxidoreductase, chain I [Beutenbergia cavernae DSM 12333] gi|229567614|gb|ACQ81465.1| NADH-quinone oxidoreductase, chain I [Beutenbergia cavernae DSM 12333] Length = 254 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 55/143 (38%), Positives = 73/143 (51%), Gaps = 7/143 (4%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V F + F+ T YPFEK T PR+ G H L RY +G E+CI C+LC CPA Sbjct: 55 VAGFGVTFSSMFRPSMTEQYPFEKKPTQPRYHGRHQLNRYADGLEKCIGCELCAWACPAD 114 Query: 77 AITIESGPRCH-----DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E G R Y I+ ++CI+CGLC EACP A+ +FE A TR Sbjct: 115 AIYVEGADNSPDAQFSPGERYGRVYQINYLRCIFCGLCIEACPTRALTMTNDFELAGPTR 174 Query: 132 QELYYDKERLLNNGDRWESEIVR 154 + L + K+ LL E ++ Sbjct: 175 EGLIFTKDELLAPLR--EGQLAA 195 >gi|296130543|ref|YP_003637793.1| NADH-quinone oxidoreductase, chain I [Cellulomonas flavigena DSM 20109] gi|296022358|gb|ADG75594.1| NADH-quinone oxidoreductase, chain I [Cellulomonas flavigena DSM 20109] Length = 247 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 52/132 (39%), Positives = 70/132 (53%), Gaps = 5/132 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V F + FK T YP E+ T PR+ G H L RYP+G E+CI C+LC CPA Sbjct: 34 VAGFGVTFANMFKPTVTEQYPREQVPTKPRYHGRHQLNRYPDGLEKCIGCELCAWACPAD 93 Query: 77 AITIESGPRCH-----DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E+ G R Y I+ ++CI+CGLC EACP A+ +E A TR Sbjct: 94 AIYVEADDNTPDAQYSPGERYGRVYQINYLRCIFCGLCIEACPTRALTMTNEYELAGPTR 153 Query: 132 QELYYDKERLLN 143 + ++K+ LL Sbjct: 154 PGMIWEKQDLLA 165 >gi|226306206|ref|YP_002766166.1| NADH-quinone oxidoreductase chain I [Rhodococcus erythropolis PR4] gi|259514779|sp|C0ZYJ2|NUOI_RHOE4 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|226185323|dbj|BAH33427.1| NADH-quinone oxidoreductase chain I [Rhodococcus erythropolis PR4] Length = 195 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 56/139 (40%), Positives = 73/139 (52%), Gaps = 8/139 (5%) Query: 13 LKEFVG---AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69 + EF+G F + L FK T YP EK T+P + G H L RY +G E+CI C+LC Sbjct: 1 MPEFLGPIAGFGVTLSTMFKKPETEFYPEEKRPTAPGYHGRHQLNRYADGLEKCIGCELC 60 Query: 70 EAICPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 CPA AI +E R G R Y I+ ++CI CGLC EACP A+ + Sbjct: 61 AWACPADAIYVEGADNTEEERFSPGERYGQVYQINYLRCIGCGLCVEACPTRALTMTNEY 120 Query: 125 EFATETRQELYYDKERLLN 143 E + R L Y+K+RLL Sbjct: 121 EMVDDNRAGLIYEKDRLLA 139 >gi|330465210|ref|YP_004402953.1| NADH dehydrogenase subunit I [Verrucosispora maris AB-18-032] gi|328808181|gb|AEB42353.1| NADH dehydrogenase subunit I [Verrucosispora maris AB-18-032] Length = 213 Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 51/136 (37%), Positives = 73/136 (53%), Gaps = 5/136 (3%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + F + + FK T +YPF + +PR+ G H L R+P+G E+CI C+LC Sbjct: 4 ITGTFKGFGVTFSHMFKKVVTTDYPFTPPTPAPRYHGRHILNRHPDGLEKCIGCELCAWA 63 Query: 73 CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CPA AI +E R G R Y I+ +CI+CGLC EACP ++ +E A Sbjct: 64 CPADAIYVEGGDNTDEQRFSPGERYASVYQINYARCIFCGLCIEACPTRSLTMSNEYELA 123 Query: 128 TETRQELYYDKERLLN 143 + RQ+L + KE+LL Sbjct: 124 RDNRQDLIFTKEQLLA 139 >gi|270158106|ref|ZP_06186763.1| NADH-quinone oxidoreductase I subunit [Legionella longbeachae D-4968] gi|289163629|ref|YP_003453767.1| NADH-quinone oxidoreductase chain I [Legionella longbeachae NSW150] gi|269990131|gb|EEZ96385.1| NADH-quinone oxidoreductase I subunit [Legionella longbeachae D-4968] gi|288856802|emb|CBJ10613.1| NADH-quinone oxidoreductase chain I [Legionella longbeachae NSW150] Length = 166 Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats. Identities = 83/138 (60%), Positives = 96/138 (69%), Gaps = 1/138 (0%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 YFFK K T+ +P EK SPRFRG ALRRYPNGEERCIACKLCEA+CPA AITIE+ PR Sbjct: 30 YFFKKKITVQFPEEKTPISPRFRGLLALRRYPNGEERCIACKLCEAVCPALAITIEAQPR 89 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNG 145 DGTRRT RYDIDM KCI CGLC+E+CPVD+IV P + R + KE+LL G Sbjct: 90 -EDGTRRTTRYDIDMFKCINCGLCEESCPVDSIVVTPIHHYHVSERGQNIMTKEKLLALG 148 Query: 146 DRWESEIVRNIVTDSPYR 163 D E ++ + D YR Sbjct: 149 DLMEPKLAADRAADEKYR 166 >gi|302536176|ref|ZP_07288518.1| NADH-plastoquinone oxidoreductase, I subunit [Streptomyces sp. C] gi|302445071|gb|EFL16887.1| NADH-plastoquinone oxidoreductase, I subunit [Streptomyces sp. C] Length = 226 Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats. Identities = 55/132 (41%), Positives = 73/132 (55%), Gaps = 5/132 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V F + + FK + T YP ++ +T+PRF G H L R+P+G E+CI C+LC CPA Sbjct: 28 VAGFGVTFKAMFKKRLTEQYPEQQKTTAPRFHGRHQLNRHPDGLEKCIGCELCAWACPAD 87 Query: 77 AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E R G R Y I+ +CI CGLC EACP A+ FE A +R Sbjct: 88 AIYVEGADNTEEERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTNEFELADASR 147 Query: 132 QELYYDKERLLN 143 + L Y KE+LL Sbjct: 148 ESLIYTKEQLLA 159 >gi|302521202|ref|ZP_07273544.1| NADH-plastoquinone oxidoreductase, I subunit [Streptomyces sp. SPB78] gi|302430097|gb|EFL01913.1| NADH-plastoquinone oxidoreductase, I subunit [Streptomyces sp. SPB78] Length = 267 Score = 138 bits (347), Expect = 3e-31, Method: Composition-based stats. Identities = 54/132 (40%), Positives = 71/132 (53%), Gaps = 5/132 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V F + + FK + T YP + T+PRF G H L R+P+G E+C+ C+LC CPA Sbjct: 59 VAGFGVTFKAMFKKRLTEQYPEQPKVTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 118 Query: 77 AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E R G R Y I+ +CI CGLC EACP A+ FE A TR Sbjct: 119 AIYVEGADNTEQERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTSEFELADSTR 178 Query: 132 QELYYDKERLLN 143 + L Y K++LL Sbjct: 179 ENLIYTKDQLLA 190 >gi|238062219|ref|ZP_04606928.1| NADH-quinone oxidoreductase, I subunit [Micromonospora sp. ATCC 39149] gi|237884030|gb|EEP72858.1| NADH-quinone oxidoreductase, I subunit [Micromonospora sp. ATCC 39149] Length = 213 Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats. Identities = 50/136 (36%), Positives = 74/136 (54%), Gaps = 5/136 (3%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + F + + F+ T +YPF+ ++PR+ G H L R+P+G E+CI C+LC Sbjct: 4 ITGTFKGFGVTFSHMFRKVVTTDYPFKPPVSAPRYHGRHILNRHPDGLEKCIGCELCAWA 63 Query: 73 CPAQAITIESGPRCH-----DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CPA AI +E G G R Y I+ +CI+CGLC EACP ++ +E A Sbjct: 64 CPADAIYVEGGDNTEENRLSPGERHASVYQINYARCIFCGLCIEACPTRSLTMSNEYELA 123 Query: 128 TETRQELYYDKERLLN 143 + RQ+L + KE+LL Sbjct: 124 RDNRQDLIFTKEQLLA 139 >gi|319950459|ref|ZP_08024373.1| NADH dehydrogenase subunit I [Dietzia cinnamea P4] gi|319435882|gb|EFV91088.1| NADH dehydrogenase subunit I [Dietzia cinnamea P4] Length = 186 Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats. Identities = 54/136 (39%), Positives = 74/136 (54%), Gaps = 5/136 (3%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 E + F + F+ K T YP EK T+PR+ G H L RY +G E+CI C+LC Sbjct: 7 FLEPLAGFGVTFATMFRKKHTEQYPEEKVPTAPRYHGRHQLNRYADGLEKCIGCELCAWA 66 Query: 73 CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CPA AI +E + R G R Y I+ ++CI CGLC EACP A+ ++E A Sbjct: 67 CPADAIYVEGADNTAEERFSPGERYGRIYQINYLRCIGCGLCVEACPTRALTMTNDYEMA 126 Query: 128 TETRQELYYDKERLLN 143 + R +L Y+K+ LL Sbjct: 127 DDNRADLIYEKQDLLA 142 >gi|295837117|ref|ZP_06824050.1| NADH-quinone oxidoreductase, I subunit [Streptomyces sp. SPB74] gi|295826362|gb|EFG64799.1| NADH-quinone oxidoreductase, I subunit [Streptomyces sp. SPB74] Length = 267 Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats. Identities = 54/132 (40%), Positives = 71/132 (53%), Gaps = 5/132 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V F + + FK + T YP + T+PRF G H L R+P+G E+C+ C+LC CPA Sbjct: 59 VAGFGVTFKAMFKKRLTEQYPEQPKVTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 118 Query: 77 AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E R G R Y I+ +CI CGLC EACP A+ FE A TR Sbjct: 119 AIYVEGADNTEQERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTSEFELADSTR 178 Query: 132 QELYYDKERLLN 143 + L Y K++LL Sbjct: 179 ENLIYTKDQLLA 190 >gi|108798542|ref|YP_638739.1| NADH dehydrogenase subunit I [Mycobacterium sp. MCS] gi|119867642|ref|YP_937594.1| NADH dehydrogenase subunit I [Mycobacterium sp. KMS] gi|123179140|sp|Q1BBQ1|NUOI_MYCSS RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|156633529|sp|A1UD96|NUOI_MYCSK RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|108768961|gb|ABG07683.1| NADH dehydrogenase subunit I [Mycobacterium sp. MCS] gi|119693731|gb|ABL90804.1| NADH dehydrogenase subunit I [Mycobacterium sp. KMS] Length = 174 Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats. Identities = 53/136 (38%), Positives = 74/136 (54%), Gaps = 5/136 (3%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 L + V F + FK T YP + G +PR+ G H L RYP+G E+CI C+LC Sbjct: 4 LWDAVAGFAVTFGTLFKKPITEEYPEKPGPVAPRYHGRHQLNRYPDGLEKCIGCELCAWA 63 Query: 73 CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CPA AI +E + R G R Y I+ ++CI CGLC EACP A+ ++E A Sbjct: 64 CPADAIYVEGDDNTADERYSPGERYGRVYQINYLRCIGCGLCIEACPTRALTMTNDYEMA 123 Query: 128 TETRQELYYDKERLLN 143 + R +L + K++LL Sbjct: 124 DDNRADLIWGKDKLLA 139 >gi|126434140|ref|YP_001069831.1| NADH dehydrogenase subunit I [Mycobacterium sp. JLS] gi|156633528|sp|A3PWR3|NUOI_MYCSJ RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|126233940|gb|ABN97340.1| NADH dehydrogenase subunit I [Mycobacterium sp. JLS] Length = 174 Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats. Identities = 53/136 (38%), Positives = 74/136 (54%), Gaps = 5/136 (3%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 L + V F + FK T YP + G +PR+ G H L RYP+G E+CI C+LC Sbjct: 4 LWDAVAGFAVTFGTLFKKPITEEYPEKPGPVAPRYHGRHQLNRYPDGLEKCIGCELCAWA 63 Query: 73 CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CPA AI +E + R G R Y I+ ++CI CGLC EACP A+ ++E A Sbjct: 64 CPADAIYVEGDDNTADERYSPGERYGRVYQINYLRCIGCGLCIEACPTRALTMTNDYEMA 123 Query: 128 TETRQELYYDKERLLN 143 + R +L + K++LL Sbjct: 124 DDNRADLIWGKDKLLA 139 >gi|302864909|ref|YP_003833546.1| NADH-quinone oxidoreductase subunit I [Micromonospora aurantiaca ATCC 27029] gi|315501194|ref|YP_004080081.1| NADH-quinone oxidoreductase, chain i [Micromonospora sp. L5] gi|302567768|gb|ADL43970.1| NADH-quinone oxidoreductase, chain I [Micromonospora aurantiaca ATCC 27029] gi|315407813|gb|ADU05930.1| NADH-quinone oxidoreductase, chain I [Micromonospora sp. L5] Length = 215 Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats. Identities = 51/136 (37%), Positives = 74/136 (54%), Gaps = 5/136 (3%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + F + + FK T +YPF+ ++PR+ G H L R+P+G E+CI C+LC Sbjct: 4 ITGTFKGFGVTFSHMFKKVVTTDYPFKPPVSAPRYHGRHILNRHPDGLEKCIGCELCAWA 63 Query: 73 CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CPA AI +E R G R Y I+ +CI+CGLC EACP ++ +E A Sbjct: 64 CPADAIYVEGGDNTEEQRFSPGERYASTYQINYARCIFCGLCIEACPTRSLTMSNEYELA 123 Query: 128 TETRQELYYDKERLLN 143 + RQ+L + KE+LL Sbjct: 124 RDNRQDLIFTKEQLLA 139 >gi|229490857|ref|ZP_04384692.1| NADH-quinone oxidoreductase subunit i [Rhodococcus erythropolis SK121] gi|229322247|gb|EEN88033.1| NADH-quinone oxidoreductase subunit i [Rhodococcus erythropolis SK121] Length = 185 Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats. Identities = 53/132 (40%), Positives = 69/132 (52%), Gaps = 5/132 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + F + L FK T YP EK T+P + G H L RY +G E+CI C+LC CPA Sbjct: 8 IAGFGVTLSTMFKKPETEFYPEEKRPTAPGYHGRHQLNRYADGLEKCIGCELCAWACPAD 67 Query: 77 AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E R G R Y I+ ++CI CGLC EACP A+ +E + R Sbjct: 68 AIYVEGADNTEEERFSPGERYGRVYQINYLRCIGCGLCVEACPTRALTMTNEYEMTDDNR 127 Query: 132 QELYYDKERLLN 143 L Y+K+RLL Sbjct: 128 AGLIYEKDRLLA 139 >gi|325676675|ref|ZP_08156350.1| NADH-quinone oxidoreductase subunit I [Rhodococcus equi ATCC 33707] gi|325552530|gb|EGD22217.1| NADH-quinone oxidoreductase subunit I [Rhodococcus equi ATCC 33707] Length = 181 Score = 137 bits (345), Expect = 5e-31, Method: Composition-based stats. Identities = 53/136 (38%), Positives = 71/136 (52%), Gaps = 5/136 (3%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + V F + FK T YP +K T+ R+ G H L R+P+G E+CI C+LC Sbjct: 4 FLDSVAGFGVTFSTMFKKPVTEFYPEQKAPTAERYHGRHQLNRHPDGLEKCIGCELCAWA 63 Query: 73 CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CPA AI +E R G R Y I+ ++CI CGLC EACP A+ +E A Sbjct: 64 CPADAIYVEGADNTEEERYSPGERYGRVYQINYLRCIGCGLCVEACPTRALTMTNEYEMA 123 Query: 128 TETRQELYYDKERLLN 143 + R +L Y K+RLL Sbjct: 124 DDNRIDLIYGKDRLLA 139 >gi|226365388|ref|YP_002783171.1| NADH dehydrogenase subunit I [Rhodococcus opacus B4] gi|254772596|sp|C1AZF5|NUOI_RHOOB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|226243878|dbj|BAH54226.1| NADH-quinone oxidoreductase chain I [Rhodococcus opacus B4] Length = 188 Score = 137 bits (344), Expect = 6e-31, Method: Composition-based stats. Identities = 54/132 (40%), Positives = 70/132 (53%), Gaps = 5/132 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + F + FK T YP EK T+PR+ G H L RY +G E+CI C+LC CPA Sbjct: 8 IAGFGVTFSTMFKKANTEFYPEEKTPTAPRYHGRHQLNRYADGLEKCIGCELCAWACPAD 67 Query: 77 AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E R G R Y I+ ++CI CGLC EACP A+ +E A + R Sbjct: 68 AIFVEGADNTDEERYSPGERYGRVYQINYLRCIGCGLCIEACPTRALTMTNEYEMADDNR 127 Query: 132 QELYYDKERLLN 143 L Y+K+RLL Sbjct: 128 AGLIYEKDRLLA 139 >gi|254382434|ref|ZP_04997793.1| NADH-quinone oxidoreductase subunit I 1 [Streptomyces sp. Mg1] gi|194341338|gb|EDX22304.1| NADH-quinone oxidoreductase subunit I 1 [Streptomyces sp. Mg1] Length = 201 Score = 137 bits (344), Expect = 6e-31, Method: Composition-based stats. Identities = 55/132 (41%), Positives = 72/132 (54%), Gaps = 5/132 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V F + + FK + T YP + +T+PRF G H L R+P+G E+CI C+LC CPA Sbjct: 16 VAGFGVTFKAMFKKRLTEQYPEQPKTTAPRFHGRHQLNRHPDGLEKCIGCELCAWACPAD 75 Query: 77 AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E R G R Y I+ +CI CGLC EACP A+ FE A +R Sbjct: 76 AIYVEGADNTEEERYSPGERYGAVYQINYARCILCGLCIEACPTRALTMTNEFELADASR 135 Query: 132 QELYYDKERLLN 143 + L Y KE+LL Sbjct: 136 ESLIYTKEQLLA 147 >gi|145225068|ref|YP_001135746.1| NADH dehydrogenase subunit I [Mycobacterium gilvum PYR-GCK] gi|226737403|sp|A4TDB3|NUOI_MYCGI RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|145217554|gb|ABP46958.1| NADH dehydrogenase subunit I [Mycobacterium gilvum PYR-GCK] Length = 175 Score = 137 bits (344), Expect = 6e-31, Method: Composition-based stats. Identities = 51/136 (37%), Positives = 70/136 (51%), Gaps = 5/136 (3%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + V F + FK T YP + G + R+ G H L RY +G E+CI C+LC Sbjct: 4 FLDAVAGFGVTFGSMFKKPVTEEYPEKPGPVAKRYHGRHQLNRYADGLEKCIGCELCAWA 63 Query: 73 CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CPA AI +E R G R Y I+ ++CI CGLC EACP A+ ++E A Sbjct: 64 CPADAIFVEGADNTEAERYSPGERYGRVYQINYLRCIGCGLCIEACPTRALTMTNDYEMA 123 Query: 128 TETRQELYYDKERLLN 143 + R +L Y K++LL Sbjct: 124 DDNRADLIYGKDKLLA 139 >gi|118617954|ref|YP_906286.1| NADH dehydrogenase subunit I [Mycobacterium ulcerans Agy99] gi|183981490|ref|YP_001849781.1| NADH dehydrogenase I (chain I) NuoI (NADH- ubiquinone oxidoreductase chain I) [Mycobacterium marinum M] gi|156633531|sp|A0PR46|NUOI_MYCUA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|226737404|sp|B2HGE0|NUOI_MYCMM RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|118570064|gb|ABL04815.1| NADH dehydrogenase I (chain I) NuoI (NADH- ubiquinone oxidoreductase chain I) [Mycobacterium ulcerans Agy99] gi|183174816|gb|ACC39926.1| NADH dehydrogenase I (chain I) NuoI (NADH- ubiquinone oxidoreductase chain I) [Mycobacterium marinum M] Length = 181 Score = 137 bits (344), Expect = 7e-31, Method: Composition-based stats. Identities = 53/136 (38%), Positives = 73/136 (53%), Gaps = 5/136 (3%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + + F + FK T YP + G +PR+ G H L RYP+G E+CI C+LC Sbjct: 4 FLDSIAGFGVTFGSMFKKTVTEEYPEKPGPVAPRYHGRHQLNRYPDGLEKCIGCELCAWA 63 Query: 73 CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CPA AI +E R G R Y I+ ++CI CGLC EACP A+ ++E A Sbjct: 64 CPADAIYVEGADNTDEQRFSPGERYGRVYQINYLRCIGCGLCIEACPTRALTMTNDYELA 123 Query: 128 TETRQELYYDKERLLN 143 + R +L Y+K+RLL Sbjct: 124 DDNRADLIYEKDRLLA 139 >gi|117927484|ref|YP_872035.1| NADH dehydrogenase subunit I [Acidothermus cellulolyticus 11B] gi|156632698|sp|A0LRI9|NUOI_ACIC1 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|117647947|gb|ABK52049.1| NADH dehydrogenase subunit I [Acidothermus cellulolyticus 11B] Length = 199 Score = 136 bits (343), Expect = 7e-31, Method: Composition-based stats. Identities = 54/136 (39%), Positives = 72/136 (52%), Gaps = 5/136 (3%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 L + F + F+ TT YP EK T PR+ G H L R+P+G E+CI C+LC Sbjct: 5 LPGPLRGFGVTFGTMFRRVTTEQYPDEKKPTMPRYHGRHVLNRHPDGLEKCIGCELCAWA 64 Query: 73 CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CPA AI +E R G R Y I+ ++CI+CG C EACP A+ +E A Sbjct: 65 CPADAIYVEGADNTEEERYSPGERYGRVYQINYLRCIFCGYCIEACPTRALTMSNEYELA 124 Query: 128 TETRQELYYDKERLLN 143 + R +L Y KE+LL Sbjct: 125 DDNRADLIYTKEQLLA 140 >gi|254819280|ref|ZP_05224281.1| NADH dehydrogenase subunit I [Mycobacterium intracellulare ATCC 13950] Length = 181 Score = 136 bits (343), Expect = 8e-31, Method: Composition-based stats. Identities = 55/136 (40%), Positives = 74/136 (54%), Gaps = 5/136 (3%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + V F + L FK + T YP + G PR+ G H L RYP+G E+CI C+LC Sbjct: 4 FLDAVAGFGVTLGSMFKKRVTEEYPEKPGPVMPRYHGRHQLNRYPDGLEKCIGCELCAWA 63 Query: 73 CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CPA AI +E R G R Y I+ ++CI CGLC EACP A+ ++E A Sbjct: 64 CPADAIYVEGADNTEELRYSPGERYGRVYQINYLRCIGCGLCIEACPTRALTMTNDYEMA 123 Query: 128 TETRQELYYDKERLLN 143 + R +L Y+K+RLL Sbjct: 124 DDNRADLIYEKDRLLA 139 >gi|326382755|ref|ZP_08204445.1| NADH dehydrogenase subunit I [Gordonia neofelifaecis NRRL B-59395] gi|326198345|gb|EGD55529.1| NADH dehydrogenase subunit I [Gordonia neofelifaecis NRRL B-59395] Length = 184 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 50/136 (36%), Positives = 72/136 (52%), Gaps = 5/136 (3%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + + + F + F+ T YP +K TS R+ G H L RY +G E+CI C+LC Sbjct: 1 MGDALAGFGVTFSGMFRKTVTEQYPEQKEPTSRRYHGRHQLNRYDDGLEKCIGCELCAWA 60 Query: 73 CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CPA AI +E R G R Y I+ ++CI CGLC EACP A+ ++E A Sbjct: 61 CPADAIYVEGADNTDDERYSPGERYGRVYQINYLRCIGCGLCIEACPTRALTMTNDYEMA 120 Query: 128 TETRQELYYDKERLLN 143 +R + Y+K++LL Sbjct: 121 GPSRAGMIYEKDQLLA 136 >gi|118467785|ref|YP_886416.1| NADH dehydrogenase subunit I [Mycobacterium smegmatis str. MC2 155] gi|156633527|sp|A0QU28|NUOI_MYCS2 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|118169072|gb|ABK69968.1| NADH-quinone oxidoreductase, I subunit [Mycobacterium smegmatis str. MC2 155] Length = 180 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 52/136 (38%), Positives = 73/136 (53%), Gaps = 5/136 (3%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + + F + L FK T YP + G +PR+ G H L RYP+G E+CI C+LC Sbjct: 4 FLDALAGFAVTLGSMFKKPITEGYPEKPGPVAPRYHGRHQLNRYPDGLEKCIGCELCAWA 63 Query: 73 CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CPA AI +E + R G R Y I+ ++CI CGLC EACP A+ +E A Sbjct: 64 CPADAIYVEGADNTADERYSPGERYGRVYQINYLRCIGCGLCIEACPTRALTMTTEYEMA 123 Query: 128 TETRQELYYDKERLLN 143 + R +L + K++LL Sbjct: 124 DDNRADLIWGKDKLLA 139 >gi|284034161|ref|YP_003384092.1| NADH-quinone oxidoreductase subunit I [Kribbella flavida DSM 17836] gi|283813454|gb|ADB35293.1| NADH-quinone oxidoreductase, chain I [Kribbella flavida DSM 17836] Length = 182 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 57/136 (41%), Positives = 76/136 (55%), Gaps = 5/136 (3%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 L + V F + R F+ T YPF+K T+PRF G H L R+P+G E+CI C+LC Sbjct: 8 LWDPVAGFGVTFRTMFRKVFTEQYPFDKKPTAPRFHGRHQLNRWPDGLEKCIGCELCAWA 67 Query: 73 CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CPA AI +E G R G R Y I+ ++CI CGLC EACP A+ +E A Sbjct: 68 CPADAIYVEGADNTEGGRMSPGERYGRVYQINYLRCILCGLCIEACPTRALTMTNEYELA 127 Query: 128 TETRQELYYDKERLLN 143 +R+ L Y+K+ LL Sbjct: 128 DRSRESLIYEKKDLLA 143 >gi|285017800|ref|YP_003375511.1| NADH-quinone oxidoreductase subunitI(nadh dehydrogenaseIsubunitI (ndh-1 subunitI (nuo9) oxidoreductase [Xanthomonas albilineans GPE PC73] gi|283473018|emb|CBA15523.1| probable nadh-quinone oxidoreductase subunitI(nadh dehydrogenaseIsubunitI (ndh-1 subunitI (nuo9) oxidoreductase protein [Xanthomonas albilineans] Length = 162 Score = 136 bits (342), Expect = 1e-30, Method: Composition-based stats. Identities = 86/139 (61%), Positives = 100/139 (71%), Gaps = 1/139 (0%) Query: 25 RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84 +Y F+ K T+ YP EK SPRFRG HALRRYPNGEERCIACKLCEA+CPA AITI+S Sbjct: 25 KYTFRPKYTVLYPMEKFPQSPRFRGLHALRRYPNGEERCIACKLCEAVCPALAITIDSTK 84 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNN 144 R DGTRRT RYDID+ KCIYCG C+E+CPVD+IVE E+ E R E K +LL Sbjct: 85 R-EDGTRRTTRYDIDLFKCIYCGFCEESCPVDSIVETQVLEYHFEKRGENIVTKPQLLAI 143 Query: 145 GDRWESEIVRNIVTDSPYR 163 GDR E+EI D+P+R Sbjct: 144 GDRLEAEIAERRAADAPFR 162 >gi|315445437|ref|YP_004078316.1| NADH dehydrogenase subunit I [Mycobacterium sp. Spyr1] gi|315263740|gb|ADU00482.1| NADH dehydrogenase subunit I [Mycobacterium sp. Spyr1] Length = 175 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 51/136 (37%), Positives = 69/136 (50%), Gaps = 5/136 (3%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + V F + FK T YP G + R+ G H L RY +G E+CI C+LC Sbjct: 4 FLDAVAGFGVTFGSMFKKPVTEEYPEMPGPVAKRYHGRHQLNRYADGLEKCIGCELCAWA 63 Query: 73 CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CPA AI +E R G R Y I+ ++CI CGLC EACP A+ ++E A Sbjct: 64 CPADAIFVEGADNTEAERYSPGERYGRVYQINYLRCIGCGLCIEACPTRALTMTNDYEMA 123 Query: 128 TETRQELYYDKERLLN 143 + R +L Y K++LL Sbjct: 124 DDNRADLIYGKDKLLA 139 >gi|312139316|ref|YP_004006652.1| NADH dehydrogenase (quinone) chain i nuoi [Rhodococcus equi 103S] gi|311888655|emb|CBH47967.1| NADH dehydrogenase (quinone) chain I NuoI [Rhodococcus equi 103S] Length = 181 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 53/135 (39%), Positives = 71/135 (52%), Gaps = 5/135 (3%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + V F + FK T YP +K T+ R+ G H L R+P+G E+CI C+LC Sbjct: 4 FLDSVAGFGVTFSTMFKKPVTEFYPEQKAPTAERYHGRHQLNRHPDGLEKCIGCELCAWA 63 Query: 73 CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CPA AI +E R G R Y I+ ++CI CGLC EACP A+ +E A Sbjct: 64 CPADAIYVEGADNTEEERYSPGERYGRVYQINYLRCIGCGLCVEACPTRALTMTNEYEMA 123 Query: 128 TETRQELYYDKERLL 142 + R +L Y K+RLL Sbjct: 124 DDNRIDLIYGKDRLL 138 >gi|119714792|ref|YP_921757.1| NADH dehydrogenase subunit I [Nocardioides sp. JS614] gi|156633534|sp|A1SE35|NUOI_NOCSJ RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|119535453|gb|ABL80070.1| NADH dehydrogenase subunit I [Nocardioides sp. JS614] Length = 196 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 55/140 (39%), Positives = 74/140 (52%), Gaps = 9/140 (6%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + + F + R FK T YPF+K T+PRF G H L R+P+G E+C+ C+LC Sbjct: 14 FWDPIAGFGVTFRTMFKKVVTEQYPFDKYPTAPRFHGRHQLNRWPDGLEKCVGCELCAWA 73 Query: 73 CPAQAITIES---------GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 CPA AI +E G R G R Y I+ ++CI CGLC EACP A+ Sbjct: 74 CPADAIYVEGASNSDDPDGGERFSPGERYGRVYQINYLRCILCGLCIEACPTRALTMTNE 133 Query: 124 FEFATETRQELYYDKERLLN 143 +E A + R +L Y+K LL Sbjct: 134 YELADDNRADLIYEKSDLLA 153 >gi|294630804|ref|ZP_06709364.1| NADH-quinone oxidoreductase, I subunit [Streptomyces sp. e14] gi|292834137|gb|EFF92486.1| NADH-quinone oxidoreductase, I subunit [Streptomyces sp. e14] Length = 213 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 55/136 (40%), Positives = 73/136 (53%), Gaps = 5/136 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V F + + FK + T YP +K +T+PRF G H L R+P+G E+C+ C+LC CPA Sbjct: 16 VAGFGVTFKAMFKKRLTEQYPEQKKTTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 75 Query: 77 AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E R G R Y I+ +CI CGLC EACP A+ FE A +R Sbjct: 76 AIYVEGADNTDEERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTNEFELADSSR 135 Query: 132 QELYYDKERLLNNGDR 147 L Y KE+LL + Sbjct: 136 ANLIYTKEQLLAGLEE 151 >gi|194366596|ref|YP_002029206.1| NADH dehydrogenase subunit I [Stenotrophomonas maltophilia R551-3] gi|194349400|gb|ACF52523.1| NADH-quinone oxidoreductase, chain I [Stenotrophomonas maltophilia R551-3] Length = 162 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 87/139 (62%), Positives = 99/139 (71%), Gaps = 1/139 (0%) Query: 25 RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84 +Y FK K T+ YP EK SPRFRG HALRRYPNGEERCIACKLCEA+CPA AITI+S Sbjct: 25 KYSFKPKYTMMYPMEKFPQSPRFRGLHALRRYPNGEERCIACKLCEAVCPALAITIDSAK 84 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNN 144 R DGTRRT RYDID+ KCI+CG C+E+CPVD+IVE E+ E R E K +LL Sbjct: 85 R-EDGTRRTTRYDIDLFKCIFCGFCEESCPVDSIVETHILEYHFENRGENIVTKPQLLAL 143 Query: 145 GDRWESEIVRNIVTDSPYR 163 GDR ESEI D+ YR Sbjct: 144 GDRLESEIAERRAADAAYR 162 >gi|169629228|ref|YP_001702877.1| NADH dehydrogenase subunit I [Mycobacterium abscessus ATCC 19977] gi|169241195|emb|CAM62223.1| NADH-quinone oxidoreductase, I subunit NuoI [Mycobacterium abscessus] Length = 178 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 52/134 (38%), Positives = 74/134 (55%), Gaps = 5/134 (3%) Query: 15 EFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP 74 + + F++ FK + T YP +K T+PR+ G H L RY +G E+CI C+LC CP Sbjct: 10 DAMAGFWVTFSSMFKKRLTEQYPEKKQPTAPRYHGRHQLNRYADGLEKCIGCELCAWACP 69 Query: 75 AQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 A AI +E R G R Y I+ ++CI CGLC EACP A+ ++E A + Sbjct: 70 ADAIFVEGADNSEEERFSPGERYGRVYQINYLRCIGCGLCIEACPTRALTMTNDYEMADD 129 Query: 130 TRQELYYDKERLLN 143 R +L Y K++LL Sbjct: 130 NRADLIYGKDKLLA 143 >gi|111022880|ref|YP_705852.1| NADH dehydrogenase subunit I [Rhodococcus jostii RHA1] gi|123045604|sp|Q0S442|NUOI_RHOSR RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|110822410|gb|ABG97694.1| probable NADH dehydrogenase subunit I [Rhodococcus jostii RHA1] Length = 188 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 54/132 (40%), Positives = 70/132 (53%), Gaps = 5/132 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + F + FK T YP EK T+PR+ G H L RY +G E+CI C+LC CPA Sbjct: 8 IAGFGVTFSTMFKKSNTEFYPEEKVPTAPRYHGRHQLNRYADGLEKCIGCELCAWACPAD 67 Query: 77 AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E R G R Y I+ ++CI CGLC EACP A+ +E A + R Sbjct: 68 AIYVEGADNTDEERFSPGERYGQVYQINYLRCIGCGLCIEACPTRALTMTNEYEMADDNR 127 Query: 132 QELYYDKERLLN 143 L Y+K+RLL Sbjct: 128 AGLIYEKDRLLA 139 >gi|120402875|ref|YP_952704.1| NADH dehydrogenase subunit I [Mycobacterium vanbaalenii PYR-1] gi|156633532|sp|A1T698|NUOI_MYCVP RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|119955693|gb|ABM12698.1| NADH dehydrogenase subunit I [Mycobacterium vanbaalenii PYR-1] Length = 174 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 52/136 (38%), Positives = 71/136 (52%), Gaps = 5/136 (3%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + V F + FK T YP + G + R+ G H L RYP+G E+CI C+LC Sbjct: 4 FLDAVAGFGVTFGSMFKKPVTEEYPEKPGPVAKRYHGRHQLNRYPDGLEKCIGCELCAWA 63 Query: 73 CPAQAITIESG-----PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CPA AI +E R G R Y I+ ++CI CGLC EACP A+ ++E A Sbjct: 64 CPADAIFVEGADNTESERYSPGERYGRVYQINYLRCIGCGLCIEACPTRALTMTNDYEMA 123 Query: 128 TETRQELYYDKERLLN 143 + R +L Y K++LL Sbjct: 124 DDNRSDLIYGKDKLLA 139 >gi|111220507|ref|YP_711301.1| NADH dehydrogenase subunit I [Frankia alni ACN14a] gi|123044863|sp|Q0RRW0|NUOI_FRAAA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|111148039|emb|CAJ59705.1| NADH dehydrogenase (quinone) [Frankia alni ACN14a] Length = 220 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 53/136 (38%), Positives = 74/136 (54%), Gaps = 5/136 (3%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + F + FK TT YP K T+PRF G H L R+P+G E+C+ C+LC Sbjct: 3 FFDPYKGFGVTFSTMFKKPTTEQYPEYKKETAPRFHGRHQLNRHPDGLEKCVGCELCAWA 62 Query: 73 CPAQAITIESG-----PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CPA AI +E R G R Y I+ ++CI CGLC EACP A+ ++E A Sbjct: 63 CPADAIYVEGADNTETERYSPGERYGSVYQINYLRCILCGLCIEACPTRALTMSNDYELA 122 Query: 128 TETRQELYYDKERLLN 143 ++R++L + KE+LL Sbjct: 123 DDSRRDLIFTKEQLLA 138 >gi|296169182|ref|ZP_06850836.1| NADH-quinone oxidoreductase subunit I [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295896161|gb|EFG75827.1| NADH-quinone oxidoreductase subunit I [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 181 Score = 135 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 54/136 (39%), Positives = 73/136 (53%), Gaps = 5/136 (3%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + V F + FK T YP + G +PR+ G H L RYP+G E+CI C+LC Sbjct: 4 FLDAVAGFGVTFGSMFKRNVTEEYPEKPGPVAPRYHGRHQLNRYPDGLEKCIGCELCAWA 63 Query: 73 CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CPA AI +E R G R Y I+ ++CI CGLC EACP A+ ++E A Sbjct: 64 CPADAIYVEGADNTEELRYSPGERYGRVYQINYLRCIGCGLCIEACPTRALTMTNDYEMA 123 Query: 128 TETRQELYYDKERLLN 143 + R +L Y+K+RLL Sbjct: 124 DDNRADLIYEKDRLLA 139 >gi|254391145|ref|ZP_05006352.1| NADH-quinone oxidoreductase subunit I [Streptomyces clavuligerus ATCC 27064] gi|197704839|gb|EDY50651.1| NADH-quinone oxidoreductase subunit I [Streptomyces clavuligerus ATCC 27064] Length = 217 Score = 135 bits (341), Expect = 2e-30, Method: Composition-based stats. Identities = 55/132 (41%), Positives = 72/132 (54%), Gaps = 5/132 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V F + + FK + T YP E+ T+PRF G H L R+P+G E+C+ C+LC CPA Sbjct: 23 VAGFGVTFKAMFKRRLTEQYPEEQKVTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 82 Query: 77 AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E R G R Y I+ +CI CGLC EACP A+ FE A +R Sbjct: 83 AIYVEGADNTDEERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTNEFELADSSR 142 Query: 132 QELYYDKERLLN 143 + L Y KE+LL Sbjct: 143 ENLIYTKEQLLA 154 >gi|298246358|ref|ZP_06970164.1| NADH-quinone oxidoreductase, chain I [Ktedonobacter racemifer DSM 44963] gi|297553839|gb|EFH87704.1| NADH-quinone oxidoreductase, chain I [Ktedonobacter racemifer DSM 44963] Length = 208 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 56/134 (41%), Positives = 74/134 (55%), Gaps = 5/134 (3%) Query: 15 EFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP 74 E + L+ K TTI+YP E+ +PRFRG H L RY NG ERC+ C LC CP Sbjct: 4 EILKGMTTTLKNMGKKPTTISYPEEERELAPRFRGRHVLHRYDNGLERCVGCYLCAGACP 63 Query: 75 AQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 A AI IE R G R +D++M++CI+CG CQ ACP AI ++ A+ Sbjct: 64 ADAIYIEAAENTEEERVSPGERYARVFDVNMLRCIFCGYCQAACPTGAITLEKEYKLASF 123 Query: 130 TRQELYYDKERLLN 143 ++L Y KE+LL Sbjct: 124 HPEDLVYHKEQLLE 137 >gi|72163086|ref|YP_290743.1| NADH dehydrogenase subunit I [Thermobifida fusca YX] gi|110287776|sp|Q47LF2|NUOI_THEFY RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|71916818|gb|AAZ56720.1| NADH-quinone oxidoreductase, chain I [Thermobifida fusca YX] Length = 183 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 55/132 (41%), Positives = 71/132 (53%), Gaps = 5/132 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V F + FK T+ YP K T PRF G H L R+P+G E+CI C+LC CPA Sbjct: 8 VKGFGVTFHTMFKKVPTVEYPEVKAPTMPRFHGRHQLNRWPDGLEKCIGCELCAWACPAD 67 Query: 77 AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E R G R Y I+ ++CI CGLC EACP A+ +E A ++R Sbjct: 68 AIYVEAGDNTEEERYSPGERYGRVYQINYLRCILCGLCVEACPTRALTMTNEYELADDSR 127 Query: 132 QELYYDKERLLN 143 + L Y KE+LL Sbjct: 128 ESLIYTKEQLLA 139 >gi|290958252|ref|YP_003489434.1| NADH dehydrogenase subunit NuoI [Streptomyces scabiei 87.22] gi|260647778|emb|CBG70883.1| NuoI, NADH dehydrogenase subunit [Streptomyces scabiei 87.22] Length = 213 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 54/136 (39%), Positives = 73/136 (53%), Gaps = 5/136 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V F + + FK + T YP ++ +T+PRF G H L R+P+G E+C+ C+LC CPA Sbjct: 16 VAGFGVTFKAMFKKRLTEQYPEQQKTTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 75 Query: 77 AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E R G R Y I+ +CI CGLC EACP A+ FE A +R Sbjct: 76 AIYVEGADNTDEERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTNEFELADSSR 135 Query: 132 QELYYDKERLLNNGDR 147 L Y KE+LL + Sbjct: 136 ANLIYTKEQLLAGLEE 151 >gi|302559099|ref|ZP_07311441.1| NADH-quinone oxidoreductase, I subunit [Streptomyces griseoflavus Tu4000] gi|302476717|gb|EFL39810.1| NADH-quinone oxidoreductase, I subunit [Streptomyces griseoflavus Tu4000] Length = 213 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 54/136 (39%), Positives = 73/136 (53%), Gaps = 5/136 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V F + + FK + T YP ++ +T+PRF G H L R+P+G E+C+ C+LC CPA Sbjct: 16 VAGFGVTFKAMFKKRLTEQYPEQQKTTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 75 Query: 77 AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E R G R Y I+ +CI CGLC EACP A+ FE A +R Sbjct: 76 AIYVEGADNTDEERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTNEFELADSSR 135 Query: 132 QELYYDKERLLNNGDR 147 L Y KE+LL + Sbjct: 136 ANLIYTKEQLLAGLEE 151 >gi|294814402|ref|ZP_06773045.1| NADH-quinone oxidoreductase subunit I [Streptomyces clavuligerus ATCC 27064] gi|326442792|ref|ZP_08217526.1| NADH dehydrogenase subunit I [Streptomyces clavuligerus ATCC 27064] gi|294327001|gb|EFG08644.1| NADH-quinone oxidoreductase subunit I [Streptomyces clavuligerus ATCC 27064] Length = 206 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 55/132 (41%), Positives = 72/132 (54%), Gaps = 5/132 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V F + + FK + T YP E+ T+PRF G H L R+P+G E+C+ C+LC CPA Sbjct: 12 VAGFGVTFKAMFKRRLTEQYPEEQKVTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 71 Query: 77 AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E R G R Y I+ +CI CGLC EACP A+ FE A +R Sbjct: 72 AIYVEGADNTDEERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTNEFELADSSR 131 Query: 132 QELYYDKERLLN 143 + L Y KE+LL Sbjct: 132 ENLIYTKEQLLA 143 >gi|325921403|ref|ZP_08183260.1| NADH dehydrogenase subunit I [Xanthomonas gardneri ATCC 19865] gi|325548161|gb|EGD19158.1| NADH dehydrogenase subunit I [Xanthomonas gardneri ATCC 19865] Length = 162 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 84/139 (60%), Positives = 101/139 (72%), Gaps = 1/139 (0%) Query: 25 RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84 +Y FK K T+ YP EK SPRFRG HALRRYPNGEERCIACKLCEA+CPA AITI+S Sbjct: 25 KYTFKPKYTVLYPMEKFPQSPRFRGVHALRRYPNGEERCIACKLCEAVCPALAITIDSAK 84 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNN 144 R DG+RRT RYDID+ KCI+CG C+E+CPVD+IVE E+ E R E +K +LL Sbjct: 85 R-EDGSRRTTRYDIDLFKCIFCGFCEESCPVDSIVETHLLEYHFEKRGENILNKPQLLAI 143 Query: 145 GDRWESEIVRNIVTDSPYR 163 GDR+E+EI D+ +R Sbjct: 144 GDRFETEIAERRAADAAFR 162 >gi|325915547|ref|ZP_08177858.1| NADH dehydrogenase subunit I [Xanthomonas vesicatoria ATCC 35937] gi|325538263|gb|EGD09948.1| NADH dehydrogenase subunit I [Xanthomonas vesicatoria ATCC 35937] Length = 163 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 84/139 (60%), Positives = 100/139 (71%), Gaps = 1/139 (0%) Query: 25 RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84 +Y FK K T+ YP EK SPRFRG HALRRYPNGEERCIACKLCEA+CPA AITI+S Sbjct: 26 KYTFKPKYTVLYPMEKFPQSPRFRGLHALRRYPNGEERCIACKLCEAVCPALAITIDSAK 85 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNN 144 R DG+RRT RYDID+ KCI+CG C+E+CPVD+IVE E+ E R E +K +LL Sbjct: 86 R-EDGSRRTTRYDIDLFKCIFCGFCEESCPVDSIVETHILEYHFEKRGENIVNKPQLLAI 144 Query: 145 GDRWESEIVRNIVTDSPYR 163 GDR E+EI D+ +R Sbjct: 145 GDRLEAEIAERRAADAAFR 163 >gi|41409307|ref|NP_962143.1| NADH dehydrogenase subunit I [Mycobacterium avium subsp. paratuberculosis K-10] gi|118466656|ref|YP_883193.1| NADH dehydrogenase subunit I [Mycobacterium avium 104] gi|254776463|ref|ZP_05217979.1| NADH dehydrogenase subunit I [Mycobacterium avium subsp. avium ATCC 25291] gi|81700407|sp|Q73V07|NUOI2_MYCPA RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName: Full=NADH dehydrogenase I subunit I 2; AltName: Full=NDH-1 subunit I 2 gi|156633525|sp|A0QJV5|NUOI_MYCA1 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|41398127|gb|AAS05757.1| NuoI_2 [Mycobacterium avium subsp. paratuberculosis K-10] gi|118167943|gb|ABK68840.1| NADH-quinone oxidoreductase chain 1 [Mycobacterium avium 104] Length = 181 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 54/136 (39%), Positives = 73/136 (53%), Gaps = 5/136 (3%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + V F + FK T YP + G +PR+ G H L RYP+G E+CI C+LC Sbjct: 4 FLDAVAGFGVTFASMFKKHVTEEYPEKPGPVAPRYHGRHQLNRYPDGLEKCIGCELCAWA 63 Query: 73 CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CPA AI +E R G R Y I+ ++CI CGLC EACP A+ ++E A Sbjct: 64 CPADAIYVEGADNTEELRYSPGERYGRVYQINYLRCIGCGLCVEACPTRALTMTNDYEMA 123 Query: 128 TETRQELYYDKERLLN 143 + R +L Y+K+RLL Sbjct: 124 DDNRADLIYEKDRLLA 139 >gi|239929606|ref|ZP_04686559.1| NADH dehydrogenase subunit I [Streptomyces ghanaensis ATCC 14672] gi|291437930|ref|ZP_06577320.1| NADH-quinone oxidoreductase [Streptomyces ghanaensis ATCC 14672] gi|291340825|gb|EFE67781.1| NADH-quinone oxidoreductase [Streptomyces ghanaensis ATCC 14672] Length = 213 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 54/136 (39%), Positives = 72/136 (52%), Gaps = 5/136 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V F + + FK + T YP + +T+PRF G H L R+P+G E+C+ C+LC CPA Sbjct: 16 VAGFGVTFKAMFKKRLTEQYPEQPKTTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 75 Query: 77 AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E R G R Y I+ +CI CGLC EACP A+ FE A +R Sbjct: 76 AIYVEGADNTDEERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTNEFELADSSR 135 Query: 132 QELYYDKERLLNNGDR 147 L Y KE+LL + Sbjct: 136 ANLIYTKEQLLAGLEE 151 >gi|182436769|ref|YP_001824488.1| NADH dehydrogenase subunit I [Streptomyces griseus subsp. griseus NBRC 13350] gi|326777364|ref|ZP_08236629.1| NAD(P)H-quinone oxidoreductase subunit I [Streptomyces cf. griseus XylebKG-1] gi|178465285|dbj|BAG19805.1| putative NADH dehydrogenase chain I [Streptomyces griseus subsp. griseus NBRC 13350] gi|326657697|gb|EGE42543.1| NAD(P)H-quinone oxidoreductase subunit I [Streptomyces cf. griseus XylebKG-1] Length = 232 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 54/132 (40%), Positives = 69/132 (52%), Gaps = 5/132 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V F + + FK + T YP T+PRF G H L R+P+G E+C+ C+LC CPA Sbjct: 31 VAGFGVTFKAMFKKRLTEQYPETPKVTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 90 Query: 77 AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E R G R Y I+ +CI CGLC EACP A+ FE A TR Sbjct: 91 AIYVEGADNTEEERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTNEFELANTTR 150 Query: 132 QELYYDKERLLN 143 + L Y K+ LL Sbjct: 151 ESLIYTKDELLA 162 >gi|84624716|ref|YP_452088.1| NADH dehydrogenase subunit I [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188577688|ref|YP_001914617.1| NADH dehydrogenase subunit I [Xanthomonas oryzae pv. oryzae PXO99A] gi|115502548|sp|Q2P0W3|NUOI_XANOM RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|84368656|dbj|BAE69814.1| NADH-ubiquinone oxidoreductase NQO9 subunit [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188522140|gb|ACD60085.1| NADH-quinone oxidoreductase chain 9 [Xanthomonas oryzae pv. oryzae PXO99A] Length = 162 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 85/139 (61%), Positives = 100/139 (71%), Gaps = 1/139 (0%) Query: 25 RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84 +Y FK K T+ YP EK SPRFRG HALRRYPNGEERCIACKLCEA+CPA AITI+S Sbjct: 25 KYTFKPKYTVLYPMEKFPQSPRFRGLHALRRYPNGEERCIACKLCEAVCPALAITIDSAK 84 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNN 144 R DGTRRT RYDID+ KCI+CG C+E+CPVD+IVE E+ E R E +K +LL Sbjct: 85 R-EDGTRRTTRYDIDLFKCIFCGFCEESCPVDSIVETHILEYHFEKRGENIINKPQLLAI 143 Query: 145 GDRWESEIVRNIVTDSPYR 163 GDR E+EI D+ +R Sbjct: 144 GDRLETEIAERRAADAAFR 162 >gi|256396784|ref|YP_003118348.1| NADH-quinone oxidoreductase, chain I [Catenulispora acidiphila DSM 44928] gi|256363010|gb|ACU76507.1| NADH-quinone oxidoreductase, chain I [Catenulispora acidiphila DSM 44928] Length = 203 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 54/132 (40%), Positives = 69/132 (52%), Gaps = 5/132 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V F + FK +TT YP E T+ RF G H L R+P+G E+C+ C+LC CPA Sbjct: 21 VAGFGVTFSTMFKKRTTEQYPEEPKQTALRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 80 Query: 77 AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E R G R Y I+ ++CI CGLC EACP A+ FE A +R Sbjct: 81 AIYVEGADNTEEERYSPGERYGRVYQINYLRCILCGLCIEACPTRALTMTNEFELADSSR 140 Query: 132 QELYYDKERLLN 143 L Y K+ LL Sbjct: 141 ASLIYTKDELLA 152 >gi|158317828|ref|YP_001510336.1| NADH dehydrogenase subunit I [Frankia sp. EAN1pec] gi|254771924|sp|A8LC93|NUOI_FRASN RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|158113233|gb|ABW15430.1| NADH-quinone oxidoreductase, chain I [Frankia sp. EAN1pec] Length = 211 Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 53/131 (40%), Positives = 73/131 (55%), Gaps = 5/131 (3%) Query: 18 GAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA 77 F + FK TT YP +K T+PRF G H L R+P+G E+C+ C+LC CPA A Sbjct: 8 KGFGVTFSTMFKKPTTEQYPEQKKETAPRFHGRHQLNRHPDGLEKCVGCELCAWACPADA 67 Query: 78 ITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 I +E R G R Y I+ ++CI CGLC EACP A+ ++E A ++R Sbjct: 68 IYVEGADNTDEQRFSPGERYGRVYQINYLRCILCGLCIEACPTRALTMSNDYELADDSRD 127 Query: 133 ELYYDKERLLN 143 +L + KE+LL Sbjct: 128 DLIFTKEQLLA 138 >gi|21231952|ref|NP_637869.1| NADH dehydrogenase subunit I [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767921|ref|YP_242683.1| NADH dehydrogenase subunit I [Xanthomonas campestris pv. campestris str. 8004] gi|188991037|ref|YP_001903047.1| NADH dehydrogenase subunit I [Xanthomonas campestris pv. campestris str. B100] gi|81306102|sp|Q4UWB0|NUOI_XANC8 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|81860266|sp|Q8P7U0|NUOI_XANCP RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|21113682|gb|AAM41793.1| NADH-ubiquinone oxidoreductase NQO9 subunit [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573253|gb|AAY48663.1| NADH-ubiquinone oxidoreductase NQO9 subunit [Xanthomonas campestris pv. campestris str. 8004] gi|167732797|emb|CAP50991.1| NADH-ubiquinone oxidoreductase NQO9 subunit [Xanthomonas campestris pv. campestris] Length = 163 Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 85/139 (61%), Positives = 100/139 (71%), Gaps = 1/139 (0%) Query: 25 RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84 +Y FK K T+ YP EK SPRFRG HALRRYPNGEERCIACKLCEA+CPA AITI+S Sbjct: 26 KYTFKPKYTVLYPMEKFPQSPRFRGLHALRRYPNGEERCIACKLCEAVCPALAITIDSAK 85 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNN 144 R DGTRRT RYDID+ KCI+CG C+E+CPVD+IVE E+ E R E +K +LL Sbjct: 86 R-EDGTRRTTRYDIDLFKCIFCGFCEESCPVDSIVETHILEYHFEKRGENIVNKPQLLAI 144 Query: 145 GDRWESEIVRNIVTDSPYR 163 GDR E+EI D+ +R Sbjct: 145 GDRLEAEIAERRAADAAFR 163 >gi|29831388|ref|NP_826022.1| NADH dehydrogenase subunit I [Streptomyces avermitilis MA-4680] gi|81718118|sp|Q82DX3|NUOI1_STRAW RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName: Full=NADH dehydrogenase I subunit I 1; AltName: Full=NDH-1 subunit I 1 gi|29608503|dbj|BAC72557.1| putative NADH dehydrogenase I chain I (complex I) [Streptomyces avermitilis MA-4680] Length = 200 Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 55/136 (40%), Positives = 73/136 (53%), Gaps = 5/136 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V F + + FK + T YP ++ +T+PRF G H L R+P+G E+C+ C+LC CPA Sbjct: 16 VAGFGVTFKAMFKKRLTEQYPEQQKTTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 75 Query: 77 AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E R G R Y I+ +CI CGLC EACP A+ FE A +R Sbjct: 76 AIYVEGADNTDEERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTNEFELADSSR 135 Query: 132 QELYYDKERLLNNGDR 147 L Y KE+LL D Sbjct: 136 ANLIYTKEQLLAGLDD 151 >gi|156743326|ref|YP_001433455.1| NADH-quinone oxidoreductase subunit I [Roseiflexus castenholzii DSM 13941] gi|156234654|gb|ABU59437.1| NADH-quinone oxidoreductase, chain I [Roseiflexus castenholzii DSM 13941] Length = 165 Score = 135 bits (339), Expect = 3e-30, Method: Composition-based stats. Identities = 55/146 (37%), Positives = 74/146 (50%), Gaps = 5/146 (3%) Query: 12 FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71 + LRY F+ T+ YP K RFRG H L+R+ NG ERCI C LC A Sbjct: 1 MIGALFKGLGTTLRYLFRKPVTVEYPEVKRPVRERFRGRHQLKRFANGMERCIGCSLCAA 60 Query: 72 ICPAQAITIESGPRCH-----DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 CPA AI + G R RY+I+M++CI+CG C++ACP +AIV +E Sbjct: 61 ACPADAILVVPAENDPAAPNSPGERYAARYEINMLRCIFCGYCEDACPTNAIVLEHQYEL 120 Query: 127 ATETRQELYYDKERLLNNGDRWESEI 152 + R+ K+ LL D+ EI Sbjct: 121 SFYDRRSSILTKDDLLVPPDKGHGEI 146 >gi|21243424|ref|NP_643006.1| NADH dehydrogenase subunit I [Xanthomonas axonopodis pv. citri str. 306] gi|78048401|ref|YP_364576.1| NADH dehydrogenase subunit I [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|289667371|ref|ZP_06488446.1| NADH dehydrogenase subunit I [Xanthomonas campestris pv. musacearum NCPPB4381] gi|294624670|ref|ZP_06703340.1| NADH dehydrogenase subunit I [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294666769|ref|ZP_06732003.1| NADH dehydrogenase subunit I [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325924683|ref|ZP_08186121.1| NADH dehydrogenase subunit I [Xanthomonas perforans 91-118] gi|81860560|sp|Q8PJ48|NUOI_XANAC RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|115502547|sp|Q3BRN7|NUOI_XANC5 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|21108976|gb|AAM37542.1| NADH-ubiquinone oxidoreductase NQO9 subunit [Xanthomonas axonopodis pv. citri str. 306] gi|78036831|emb|CAJ24524.1| NADH-ubiquinone oxidoreductase NQO9 subunit [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|292601026|gb|EFF45093.1| NADH dehydrogenase subunit I [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292603430|gb|EFF46847.1| NADH dehydrogenase subunit I [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|325544889|gb|EGD16234.1| NADH dehydrogenase subunit I [Xanthomonas perforans 91-118] Length = 162 Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats. Identities = 85/139 (61%), Positives = 100/139 (71%), Gaps = 1/139 (0%) Query: 25 RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84 +Y FK K T+ YP EK SPRFRG HALRRYPNGEERCIACKLCEA+CPA AITI+S Sbjct: 25 KYTFKPKYTVLYPMEKFPQSPRFRGLHALRRYPNGEERCIACKLCEAVCPALAITIDSAK 84 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNN 144 R DGTRRT RYDID+ KCI+CG C+E+CPVD+IVE E+ E R E +K +LL Sbjct: 85 R-EDGTRRTTRYDIDLFKCIFCGFCEESCPVDSIVETHILEYHFEKRGENIVNKPQLLAI 143 Query: 145 GDRWESEIVRNIVTDSPYR 163 GDR E+EI D+ +R Sbjct: 144 GDRLETEIAERRAADAAFR 162 >gi|58582850|ref|YP_201866.1| NADH dehydrogenase subunit I [Xanthomonas oryzae pv. oryzae KACC10331] gi|75508126|sp|Q5GXU0|NUOI_XANOR RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|58427444|gb|AAW76481.1| NADH-ubiquinone oxidoreductase NQO9 subunit [Xanthomonas oryzae pv. oryzae KACC10331] Length = 163 Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats. Identities = 85/139 (61%), Positives = 100/139 (71%), Gaps = 1/139 (0%) Query: 25 RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84 +Y FK K T+ YP EK SPRFRG HALRRYPNGEERCIACKLCEA+CPA AITI+S Sbjct: 26 KYTFKPKYTVLYPMEKFPQSPRFRGLHALRRYPNGEERCIACKLCEAVCPALAITIDSAK 85 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNN 144 R DGTRRT RYDID+ KCI+CG C+E+CPVD+IVE E+ E R E +K +LL Sbjct: 86 R-EDGTRRTTRYDIDLFKCIFCGFCEESCPVDSIVETHILEYHFEKRGENIINKPQLLAI 144 Query: 145 GDRWESEIVRNIVTDSPYR 163 GDR E+EI D+ +R Sbjct: 145 GDRLETEIAERRAADAAFR 163 >gi|292492181|ref|YP_003527620.1| NADH-quinone oxidoreductase, chain I [Nitrosococcus halophilus Nc4] gi|291580776|gb|ADE15233.1| NADH-quinone oxidoreductase, chain I [Nitrosococcus halophilus Nc4] Length = 180 Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats. Identities = 56/140 (40%), Positives = 75/140 (53%), Gaps = 1/140 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 + L L + + + + F+ K TI YP EK +PR+RG L R P+GEERC+A Sbjct: 3 NQLKSLSLGSELRSLWTVFLHLFRPKATIQYPEEKPYIAPRWRGRIILSRDPDGEERCVA 62 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 C LC CP I ++ G + I+ +CI+CGLC+EACP AI P+FE Sbjct: 63 CNLCAVACPVDCIALQKAED-EQGRWYPEFFRINFSRCIFCGLCEEACPTYAIQLTPDFE 121 Query: 126 FATETRQELYYDKERLLNNG 145 RQ L Y+KE LL NG Sbjct: 122 MGEYERQNLVYEKEDLLING 141 >gi|302553434|ref|ZP_07305776.1| NADH-plastoquinone oxidoreductase, I subunit [Streptomyces viridochromogenes DSM 40736] gi|302471052|gb|EFL34145.1| NADH-plastoquinone oxidoreductase, I subunit [Streptomyces viridochromogenes DSM 40736] Length = 235 Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats. Identities = 54/136 (39%), Positives = 74/136 (54%), Gaps = 5/136 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V F + + FK + T YP ++ +T+PRF G H L R+P+G E+C+ C+LC CPA Sbjct: 38 VAGFGVTFKAMFKKRLTEQYPEQQKTTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 97 Query: 77 AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E R G R Y I+ +CI CGLC EACP A+ +FE A +R Sbjct: 98 AIYVEGADNTDEERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTNDFELADSSR 157 Query: 132 QELYYDKERLLNNGDR 147 L Y KE+LL + Sbjct: 158 ANLIYTKEQLLAGLEE 173 >gi|329935989|ref|ZP_08285789.1| NADH dehydrogenase subunit NuoI [Streptomyces griseoaurantiacus M045] gi|329304467|gb|EGG48345.1| NADH dehydrogenase subunit NuoI [Streptomyces griseoaurantiacus M045] Length = 213 Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats. Identities = 54/136 (39%), Positives = 73/136 (53%), Gaps = 5/136 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V F + + FK + T YP ++ +T+PRF G H L R+P+G E+C+ C+LC CPA Sbjct: 16 VAGFGVTFKAMFKKRLTEQYPEQEKTTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 75 Query: 77 AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E R G R Y I+ +CI CGLC EACP A+ FE A +R Sbjct: 76 AIYVEGADNTDEERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTNEFELADSSR 135 Query: 132 QELYYDKERLLNNGDR 147 L Y KE+LL + Sbjct: 136 ANLIYTKEQLLAGLEE 151 >gi|311897898|dbj|BAJ30306.1| putative NADH-quinone oxidoreductase subunit I [Kitasatospora setae KM-6054] Length = 195 Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats. Identities = 53/131 (40%), Positives = 71/131 (54%), Gaps = 5/131 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 F + + FK + T YP K T+PRF G H L R+P+G E+C+ C+LC CPA Sbjct: 14 AAGFGVTFKAMFKKRLTEQYPEYKKPTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 73 Query: 77 AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E R G R Y I+ +CI CGLC EACP A+ +E A +R Sbjct: 74 AIYVEGADNRDDERYSPGERYGAVYQINYARCILCGLCVEACPTRALTMTNEYELADSSR 133 Query: 132 QELYYDKERLL 142 Q+L + KE+LL Sbjct: 134 QDLIFTKEQLL 144 >gi|289665181|ref|ZP_06486762.1| NADH dehydrogenase subunit I [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 163 Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats. Identities = 85/139 (61%), Positives = 100/139 (71%), Gaps = 1/139 (0%) Query: 25 RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84 +Y FK K T+ YP EK SPRFRG HALRRYPNGEERCIACKLCEA+CPA AITI+S Sbjct: 26 KYTFKPKYTVLYPMEKFPQSPRFRGLHALRRYPNGEERCIACKLCEAVCPALAITIDSAK 85 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNN 144 R DGTRRT RYDID+ KCI+CG C+E+CPVD+IVE E+ E R E +K +LL Sbjct: 86 R-EDGTRRTTRYDIDLFKCIFCGFCEESCPVDSIVETHILEYHFEKRGENIVNKPQLLAI 144 Query: 145 GDRWESEIVRNIVTDSPYR 163 GDR E+EI D+ +R Sbjct: 145 GDRLETEIAERRAADAAFR 163 >gi|333025111|ref|ZP_08453175.1| putative NADH-plastoquinone oxidoreductase, I subunit [Streptomyces sp. Tu6071] gi|332744963|gb|EGJ75404.1| putative NADH-plastoquinone oxidoreductase, I subunit [Streptomyces sp. Tu6071] Length = 209 Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats. Identities = 53/132 (40%), Positives = 71/132 (53%), Gaps = 5/132 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + F + + FK + T YP + T+PRF G H L R+P+G E+C+ C+LC CPA Sbjct: 1 MAGFGVTFKAMFKKRLTEQYPEQPKVTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 60 Query: 77 AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E R G R Y I+ +CI CGLC EACP A+ FE A TR Sbjct: 61 AIYVEGADNTEQERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTSEFELADSTR 120 Query: 132 QELYYDKERLLN 143 + L Y K++LL Sbjct: 121 ENLIYTKDQLLA 132 >gi|262200413|ref|YP_003271621.1| NADH-quinone oxidoreductase subunit I [Gordonia bronchialis DSM 43247] gi|262083760|gb|ACY19728.1| NADH-quinone oxidoreductase, chain I [Gordonia bronchialis DSM 43247] Length = 175 Score = 134 bits (337), Expect = 5e-30, Method: Composition-based stats. Identities = 52/139 (37%), Positives = 74/139 (53%), Gaps = 8/139 (5%) Query: 13 LKEFVG---AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69 + +F+ + F T YP +K T+PR+ G H L R+P+G E+CI C+LC Sbjct: 1 MPDFLKPVSGLGVTFSGMFSPTITEQYPEQKEPTAPRYHGRHQLNRHPDGLEKCIGCELC 60 Query: 70 EAICPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 CPA AI +E R G R Y I+ ++CI CGLC EACP A+ ++ Sbjct: 61 AWACPADAIYVEGADNTDDERYSPGERYGRVYQINYLRCIGCGLCIEACPTRALTMTNDY 120 Query: 125 EFATETRQELYYDKERLLN 143 E A + R +L Y+K+RLL Sbjct: 121 ELADDNRADLIYEKDRLLA 139 >gi|251773159|gb|EES53712.1| NADH dehydrogenase, chain I [Leptospirillum ferrodiazotrophum] Length = 182 Score = 134 bits (336), Expect = 5e-30, Method: Composition-based stats. Identities = 58/146 (39%), Positives = 79/146 (54%), Gaps = 1/146 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 + + + + E L LR+ F K T YP EK + +RG A RRY +G ER Sbjct: 1 MLKKFLDTILFTEIGQGLKLTLRHMFMKKVTSQYPKEKLVLADGYRGFIAHRRYDDGVER 60 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVR-YDIDMIKCIYCGLCQEACPVDAIVEG 121 C+ C LCEAICPA+AI + S RR + Y +D +CI+CG C ACPV+A+ Sbjct: 61 CVGCDLCEAICPAKAIRVVSDIHPEVPDRRYAKEYTLDFTRCIFCGFCVVACPVNALSMT 120 Query: 122 PNFEFATETRQELYYDKERLLNNGDR 147 F ++ TR L Y KE++L GDR Sbjct: 121 KEFAHSSFTRNGLIYSKEQMLALGDR 146 >gi|328884320|emb|CCA57559.1| NADH-ubiquinone oxidoreductase chain I [Streptomyces venezuelae ATCC 10712] Length = 192 Score = 134 bits (336), Expect = 5e-30, Method: Composition-based stats. Identities = 54/136 (39%), Positives = 74/136 (54%), Gaps = 5/136 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V F + + FK + T YP ++ +T+PRF G H L R+P+G E+C+ C+LC CPA Sbjct: 8 VAGFGVTFKAMFKKRLTEQYPEQQKTTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 67 Query: 77 AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E R G R Y I+ +CI CGLC EACP A+ FE A +R Sbjct: 68 AIYVEGADNTDEERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTNEFELADSSR 127 Query: 132 QELYYDKERLLNNGDR 147 + L Y KE+LL + Sbjct: 128 ENLIYTKEQLLAGLED 143 >gi|289769826|ref|ZP_06529204.1| NADH-quinone oxidoreductase subunit I 1 [Streptomyces lividans TK24] gi|289700025|gb|EFD67454.1| NADH-quinone oxidoreductase subunit I 1 [Streptomyces lividans TK24] Length = 247 Score = 134 bits (336), Expect = 5e-30, Method: Composition-based stats. Identities = 53/136 (38%), Positives = 73/136 (53%), Gaps = 5/136 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V F + + FK + T YP ++ +T+PRF G H L R+P+G E+C+ C+LC CPA Sbjct: 50 VAGFGVTFKAMFKKRLTEQYPEQQKTTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 109 Query: 77 AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E R G R Y I+ +CI CGLC EACP A+ FE A +R Sbjct: 110 AIYVEGADNTDEERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTNEFELADSSR 169 Query: 132 QELYYDKERLLNNGDR 147 L + KE+LL + Sbjct: 170 ANLIFTKEQLLAGLEE 185 >gi|269128605|ref|YP_003301975.1| NADH-quinone oxidoreductase subunit I [Thermomonospora curvata DSM 43183] gi|268313563|gb|ACY99937.1| NADH-quinone oxidoreductase, chain I [Thermomonospora curvata DSM 43183] Length = 194 Score = 134 bits (336), Expect = 5e-30, Method: Composition-based stats. Identities = 52/132 (39%), Positives = 70/132 (53%), Gaps = 5/132 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V F + F+ T+ YP K T+PRF G H L R+P+G E+CI C+LC CPA Sbjct: 10 VKGFGVAFHQMFQKSETVQYPEVKKPTAPRFHGRHQLNRWPDGLEKCIGCELCAWACPAD 69 Query: 77 AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E R G R Y I+ ++CI CG+C EACP A+ +E A + R Sbjct: 70 AIYVEAADNTEEERYSPGERYGRVYQINYLRCILCGMCIEACPTRALTMTNEYELADDNR 129 Query: 132 QELYYDKERLLN 143 + L Y K+ LL Sbjct: 130 ESLIYTKDMLLA 141 >gi|239943484|ref|ZP_04695421.1| NADH dehydrogenase subunit I [Streptomyces roseosporus NRRL 15998] gi|239989938|ref|ZP_04710602.1| NADH dehydrogenase subunit I [Streptomyces roseosporus NRRL 11379] Length = 201 Score = 134 bits (336), Expect = 5e-30, Method: Composition-based stats. Identities = 53/132 (40%), Positives = 70/132 (53%), Gaps = 5/132 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + F + + FK + T YP +T+PRF G H L R+P+G E+C+ C+LC CPA Sbjct: 1 MAGFGVTFKAMFKKRLTEQYPETPKTTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 60 Query: 77 AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E R G R Y I+ +CI CGLC EACP A+ FE A TR Sbjct: 61 AIYVEGADNTEEERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTNEFELANTTR 120 Query: 132 QELYYDKERLLN 143 + L Y K+ LL Sbjct: 121 ESLIYTKDELLA 132 >gi|291446955|ref|ZP_06586345.1| NADH dehydrogenase subunit I [Streptomyces roseosporus NRRL 15998] gi|291349902|gb|EFE76806.1| NADH dehydrogenase subunit I [Streptomyces roseosporus NRRL 15998] Length = 279 Score = 134 bits (336), Expect = 5e-30, Method: Composition-based stats. Identities = 54/132 (40%), Positives = 70/132 (53%), Gaps = 5/132 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V F + + FK + T YP +T+PRF G H L R+P+G E+C+ C+LC CPA Sbjct: 79 VAGFGVTFKAMFKKRLTEQYPETPKTTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 138 Query: 77 AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E R G R Y I+ +CI CGLC EACP A+ FE A TR Sbjct: 139 AIYVEGADNTEEERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTNEFELANTTR 198 Query: 132 QELYYDKERLLN 143 + L Y K+ LL Sbjct: 199 ESLIYTKDELLA 210 >gi|297563975|ref|YP_003682948.1| NADH-quinone oxidoreductase, chain I [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848424|gb|ADH70442.1| NADH-quinone oxidoreductase, chain I [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 185 Score = 134 bits (336), Expect = 5e-30, Method: Composition-based stats. Identities = 55/132 (41%), Positives = 73/132 (55%), Gaps = 5/132 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V F + FK T+ YP K T+PRF G H L R+ +G E+CI C+LC CPA Sbjct: 8 VKGFGVTFHTMFKKVPTVEYPEVKRPTAPRFHGRHQLNRWADGLEKCIGCELCAWACPAD 67 Query: 77 AITIESGP-----RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E+G R G R Y I+ ++CI CGLC EACP A+ +E A ++R Sbjct: 68 AIYVEAGDNTDDDRYSPGERYGRVYQINYLRCILCGLCVEACPTRALTMTNEYELADDSR 127 Query: 132 QELYYDKERLLN 143 Q L + KE+LL Sbjct: 128 QSLIWTKEQLLA 139 >gi|331699304|ref|YP_004335543.1| NAD(P)H-quinone oxidoreductase subunit I [Pseudonocardia dioxanivorans CB1190] gi|326953993|gb|AEA27690.1| NAD(P)H-quinone oxidoreductase subunit I [Pseudonocardia dioxanivorans CB1190] Length = 188 Score = 134 bits (336), Expect = 6e-30, Method: Composition-based stats. Identities = 51/136 (37%), Positives = 71/136 (52%), Gaps = 5/136 (3%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 +F F + FK T YP + +PR+ G H L R+P+G E+C+ C+LC Sbjct: 4 FVDFFKGFGVTFSTMFKKVVTEEYPEDFPPAAPRYHGRHQLNRHPDGLEKCVGCELCAWA 63 Query: 73 CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CPA AI +E R G R Y I+ ++CI CGLC EACP ++ +E A Sbjct: 64 CPADAIFVEGGDNTEEARYSPGERYGADYQINYLRCIGCGLCIEACPTRSLTMTNFYELA 123 Query: 128 TETRQELYYDKERLLN 143 + RQ+L Y KE+LL Sbjct: 124 DDNRQDLIYTKEQLLA 139 >gi|148656359|ref|YP_001276564.1| NADH-quinone oxidoreductase subunit I [Roseiflexus sp. RS-1] gi|148568469|gb|ABQ90614.1| NADH-quinone oxidoreductase, chain I [Roseiflexus sp. RS-1] Length = 165 Score = 134 bits (336), Expect = 6e-30, Method: Composition-based stats. Identities = 52/141 (36%), Positives = 72/141 (51%), Gaps = 5/141 (3%) Query: 12 FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71 + L+Y F+ T+ YP K RFRG H L+R+ NG ERCI C LC A Sbjct: 1 MIGALFKGLGTTLKYLFRKPVTVEYPEVKRPVRERFRGRHQLKRFANGMERCIGCSLCAA 60 Query: 72 ICPAQAI-----TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 CPA AI + G R RY+I+M++CI+CG C++ACP +AIV +E Sbjct: 61 ACPADAILVVPAENDPAAPHSPGERYAERYEINMLRCIFCGYCEDACPTNAIVLEHQYEL 120 Query: 127 ATETRQELYYDKERLLNNGDR 147 + R+ K+ LL D+ Sbjct: 121 SFYDRRSSILTKDDLLVPPDK 141 >gi|21222953|ref|NP_628732.1| NADH dehydrogenase subunit I [Streptomyces coelicolor A3(2)] gi|81789730|sp|Q9XAR2|NUOI1_STRCO RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName: Full=NADH dehydrogenase I subunit I 1; AltName: Full=NDH-1 subunit I 1 gi|5042269|emb|CAB44523.1| NuoI, NADH dehydrogenase subunit [Streptomyces coelicolor A3(2)] Length = 211 Score = 134 bits (336), Expect = 6e-30, Method: Composition-based stats. Identities = 53/136 (38%), Positives = 73/136 (53%), Gaps = 5/136 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V F + + FK + T YP ++ +T+PRF G H L R+P+G E+C+ C+LC CPA Sbjct: 14 VAGFGVTFKAMFKKRLTEQYPEQQKTTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 73 Query: 77 AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E R G R Y I+ +CI CGLC EACP A+ FE A +R Sbjct: 74 AIYVEGADNTDEERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTNEFELADSSR 133 Query: 132 QELYYDKERLLNNGDR 147 L + KE+LL + Sbjct: 134 ANLIFTKEQLLAGLEE 149 >gi|256785933|ref|ZP_05524364.1| NADH dehydrogenase subunit I [Streptomyces lividans TK24] Length = 225 Score = 133 bits (335), Expect = 6e-30, Method: Composition-based stats. Identities = 53/136 (38%), Positives = 73/136 (53%), Gaps = 5/136 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V F + + FK + T YP ++ +T+PRF G H L R+P+G E+C+ C+LC CPA Sbjct: 28 VAGFGVTFKAMFKKRLTEQYPEQQKTTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 87 Query: 77 AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E R G R Y I+ +CI CGLC EACP A+ FE A +R Sbjct: 88 AIYVEGADNTDEERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTNEFELADSSR 147 Query: 132 QELYYDKERLLNNGDR 147 L + KE+LL + Sbjct: 148 ANLIFTKEQLLAGLEE 163 >gi|26990820|ref|NP_746245.1| NADH dehydrogenase subunit I [Pseudomonas putida KT2440] gi|148546977|ref|YP_001267079.1| NADH dehydrogenase subunit I [Pseudomonas putida F1] gi|167034694|ref|YP_001669925.1| NADH dehydrogenase subunit I [Pseudomonas putida GB-1] gi|170721050|ref|YP_001748738.1| NADH dehydrogenase subunit I [Pseudomonas putida W619] gi|81733276|sp|Q88FH0|NUOI_PSEPK RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|24985827|gb|AAN69709.1|AE016607_3 NADH dehydrogenase I, I subunit [Pseudomonas putida KT2440] gi|148511035|gb|ABQ77895.1| NADH-quinone oxidoreductase, chain I [Pseudomonas putida F1] gi|166861182|gb|ABY99589.1| NADH-quinone oxidoreductase, chain I [Pseudomonas putida GB-1] gi|169759053|gb|ACA72369.1| NADH-quinone oxidoreductase, chain I [Pseudomonas putida W619] gi|313498024|gb|ADR59390.1| NuoI [Pseudomonas putida BIRD-1] Length = 182 Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats. Identities = 53/141 (37%), Positives = 76/141 (53%), Gaps = 8/141 (5%) Query: 12 FLKEFVGA-------FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64 ++ + V + + F+ + T+ YP E PR+RG L R P+GEERC+ Sbjct: 4 YIGDIVKGTGTQLRSLAMVFSHGFRKRDTLQYPEEPVYLPPRYRGRIVLTRDPDGEERCV 63 Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 AC LC CP I+++ DG + I+ +CI+CGLC+EACP AI P+F Sbjct: 64 ACNLCAVACPVGCISLQKAE-TEDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDF 122 Query: 125 EFATETRQELYYDKERLLNNG 145 E A RQ+L Y+KE LL +G Sbjct: 123 EMAEFKRQDLVYEKEDLLISG 143 >gi|297625182|ref|YP_003706616.1| NADH-quinone oxidoreductase subunit I [Truepera radiovictrix DSM 17093] gi|297166362|gb|ADI16073.1| NADH-quinone oxidoreductase, chain I [Truepera radiovictrix DSM 17093] Length = 174 Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats. Identities = 55/149 (36%), Positives = 77/149 (51%), Gaps = 7/149 (4%) Query: 15 EFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP 74 + + L + FK T+ YP + PRFRG H L R+PNG E+CI C LC A CP Sbjct: 5 DIAKGMGVTLGHLFKKPVTVRYPEQPADIKPRFRGRHHLLRHPNGLEKCIGCSLCAAACP 64 Query: 75 AQAITIESGPRCH-----DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 A AI +E+ G R Y+I+M++CI+CG C+EACP A+V G FE + Sbjct: 65 AYAIYVEAAENDPENPTSPGERYAKIYEINMLRCIFCGFCEEACPTGAVVLGHEFELSDF 124 Query: 130 TRQELYYDKERLLNN--GDRWESEIVRNI 156 + Y KE +L G +W+ + Sbjct: 125 RYNDFVYGKEDMLVGVKGSKWQRREAEKL 153 >gi|206890889|ref|YP_002248948.1| NADH-quinone oxidoreductase, chain i subfamily, putative [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742827|gb|ACI21884.1| NADH-quinone oxidoreductase, chain i subfamily, putative [Thermodesulfovibrio yellowstonii DSM 11347] Length = 187 Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats. Identities = 54/146 (36%), Positives = 81/146 (55%), Gaps = 1/146 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPN-GEER 62 + + + + + + F TI YP +K FRG HA R P G+ER Sbjct: 1 MNNLLKKILFIDLIKGLLITFKTIFTTPVTIRYPKQKRPLEDGFRGRHAFVRDPETGKER 60 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+AC C +CP+Q I I+ G R +Y+ID ++CI+CG C+E CPV+AIV Sbjct: 61 CVACTKCAQVCPSQCIYIDYSINPETGARVLTKYEIDALRCIFCGYCEEVCPVNAIVLTE 120 Query: 123 NFEFATETRQELYYDKERLLNNGDRW 148 FE+A+ TR+E Y++++RLL N D + Sbjct: 121 YFEYASYTREENYFNRDRLLINWDEF 146 >gi|166712606|ref|ZP_02243813.1| NADH dehydrogenase subunit I [Xanthomonas oryzae pv. oryzicola BLS256] Length = 162 Score = 133 bits (334), Expect = 9e-30, Method: Composition-based stats. Identities = 84/139 (60%), Positives = 99/139 (71%), Gaps = 1/139 (0%) Query: 25 RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84 +Y FK K T+ YP EK SPRFRG HALRRYPNGEERCIACKLCEA+CPA AITI+S Sbjct: 25 KYTFKPKYTVLYPMEKFPQSPRFRGLHALRRYPNGEERCIACKLCEAVCPALAITIDSAK 84 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNN 144 R D TRRT RYDID+ KCI+CG C+E+CPVD+IVE E+ E R E +K +LL Sbjct: 85 REDD-TRRTTRYDIDLFKCIFCGFCEESCPVDSIVETHILEYHFEKRGENIINKPQLLAI 143 Query: 145 GDRWESEIVRNIVTDSPYR 163 GDR E+EI D+ +R Sbjct: 144 GDRLETEIAERRAADAAFR 162 >gi|271962163|ref|YP_003336359.1| formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I)-like protein [Streptosporangium roseum DSM 43021] gi|270505338|gb|ACZ83616.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I)-like protein [Streptosporangium roseum DSM 43021] Length = 171 Score = 133 bits (334), Expect = 9e-30, Method: Composition-based stats. Identities = 56/132 (42%), Positives = 72/132 (54%), Gaps = 5/132 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V F + FK T+NYP EK T+PRF G H L R+P+G E+C+ C+LC CPA Sbjct: 10 VKGFGVTFHTMFKKVETVNYPEEKKPTAPRFHGRHQLNRWPDGLEKCVGCELCAWACPAD 69 Query: 77 AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E R G R Y I+ ++CI CGLC EACP A+ +E A +R Sbjct: 70 AIFVEGADNTDEERFSPGERYGRTYQINYLRCILCGLCIEACPTRALTMTNEYELADSSR 129 Query: 132 QELYYDKERLLN 143 + L Y KE LL Sbjct: 130 ESLIYTKEMLLA 141 >gi|320009196|gb|ADW04046.1| NADH-quinone oxidoreductase, chain I [Streptomyces flavogriseus ATCC 33331] Length = 198 Score = 133 bits (334), Expect = 9e-30, Method: Composition-based stats. Identities = 54/136 (39%), Positives = 71/136 (52%), Gaps = 5/136 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V F + + FK + T YP + T+PRF G H L R+P+G E+C+ C+LC CPA Sbjct: 16 VAGFGVTFKAMFKKRLTEQYPETQKVTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 75 Query: 77 AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E R G R Y I+ +CI CGLC EACP A+ FE A TR Sbjct: 76 AIYVEGADNTDEERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTNEFELANTTR 135 Query: 132 QELYYDKERLLNNGDR 147 + L Y K+ LL + Sbjct: 136 ESLIYTKDELLAGLEE 151 >gi|325003716|ref|ZP_08124828.1| NADH dehydrogenase subunit I [Pseudonocardia sp. P1] Length = 179 Score = 133 bits (334), Expect = 1e-29, Method: Composition-based stats. Identities = 50/136 (36%), Positives = 72/136 (52%), Gaps = 5/136 (3%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + +F F + FK T YP + +PR+ G H L R+P+G E+C+ C+LC Sbjct: 1 MFDFFKGFGVTFSTMFKKVVTEEYPEDFPPAAPRYHGRHQLNRHPDGLEKCVGCELCAWA 60 Query: 73 CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CPA AI +E R G R Y I+ ++CI CGLC EACP ++ +E A Sbjct: 61 CPADAIYVEGGDNTEEARYSPGERYGAIYQINYLRCIGCGLCIEACPTRSLTMTNFYELA 120 Query: 128 TETRQELYYDKERLLN 143 + RQ+L Y KE+L+ Sbjct: 121 DDNRQDLIYTKEQLMA 136 >gi|41406193|ref|NP_959029.1| NADH dehydrogenase subunit I [Mycobacterium avium subsp. paratuberculosis K-10] gi|81700783|sp|Q744Z4|NUOI1_MYCPA RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName: Full=NADH dehydrogenase I subunit I 1; AltName: Full=NDH-1 subunit I 1 gi|41394541|gb|AAS02412.1| NuoI_1 [Mycobacterium avium subsp. paratuberculosis K-10] Length = 175 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 54/139 (38%), Positives = 74/139 (53%), Gaps = 6/139 (4%) Query: 10 FLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69 F FLK + F + FK T YP + G +PR+ G H L R+P+G E+CI C+LC Sbjct: 2 FTFLK-LIAGFRVTFSAMFKKPVTEGYPEKPGPVAPRYHGRHQLNRWPDGLEKCIGCELC 60 Query: 70 EAICPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 CPA AI +E R G R Y I+ ++CI CG C EACP A+ ++ Sbjct: 61 AWACPADAIFVESADNTEAERFSPGERYGRVYQINYLRCIGCGFCIEACPTRALTMINDY 120 Query: 125 EFATETRQELYYDKERLLN 143 E A + R +L Y K++LL Sbjct: 121 EMADDNRADLIYGKDQLLA 139 >gi|119595091|gb|EAW74685.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase), isoform CRA_a [Homo sapiens] Length = 175 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 89/129 (68%), Positives = 97/129 (75%), Gaps = 2/129 (1%) Query: 1 MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59 M+ + L E + L Y F+ TINYPFEKG SPRFRGEHALRRYP+G Sbjct: 48 MKSVTDRAARTLLWTELFRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 107 Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 EERCIACKLCEAICPAQAITIE+ PR G+RRT RYDIDM KCIYCG CQEACPVDAIV Sbjct: 108 EERCIACKLCEAICPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 166 Query: 120 EGPNFEFAT 128 EGPNFEF+T Sbjct: 167 EGPNFEFST 175 >gi|297201630|ref|ZP_06919027.1| NADH-plastoquinone oxidoreductase, I subunit [Streptomyces sviceus ATCC 29083] gi|197710998|gb|EDY55032.1| NADH-plastoquinone oxidoreductase, I subunit [Streptomyces sviceus ATCC 29083] Length = 219 Score = 132 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 53/136 (38%), Positives = 73/136 (53%), Gaps = 5/136 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V F + + FK + T YP ++ +T+PRF G H L R+P+G E+C+ C+LC CPA Sbjct: 22 VAGFGVTFKAMFKKRLTEQYPEQQKTTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 81 Query: 77 AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E R G R Y I+ +CI CGLC EACP A+ FE A +R Sbjct: 82 AIYVEGADNTDEERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTNEFELADSSR 141 Query: 132 QELYYDKERLLNNGDR 147 L + KE+LL + Sbjct: 142 ANLIFTKEQLLAGLEE 157 >gi|104782528|ref|YP_609026.1| NADH dehydrogenase subunit I [Pseudomonas entomophila L48] gi|123255480|sp|Q1I7Z3|NUOI_PSEE4 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|95111515|emb|CAK16235.1| NADH dehydrogenase I chain I, 2Fe-2S ferredoxin-related [Pseudomonas entomophila L48] Length = 182 Score = 132 bits (332), Expect = 1e-29, Method: Composition-based stats. Identities = 53/141 (37%), Positives = 76/141 (53%), Gaps = 8/141 (5%) Query: 12 FLKEFVGA-------FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64 ++ + V + + F+ + T+ YP E PR+RG L R P+GEERC+ Sbjct: 4 YIGDIVKGTGTQLRSLVMVFSHGFRKRDTLQYPEEPVYLPPRYRGRIVLTRDPDGEERCV 63 Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 AC LC CP I+++ DG + I+ +CI+CGLC+EACP AI P+F Sbjct: 64 ACNLCAVACPVGCISLQKAE-TEDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDF 122 Query: 125 EFATETRQELYYDKERLLNNG 145 E A RQ+L Y+KE LL +G Sbjct: 123 EMAEFKRQDLVYEKEDLLISG 143 >gi|296140859|ref|YP_003648102.1| NADH-quinone oxidoreductase, chain I [Tsukamurella paurometabola DSM 20162] gi|296028993|gb|ADG79763.1| NADH-quinone oxidoreductase, chain I [Tsukamurella paurometabola DSM 20162] Length = 167 Score = 132 bits (332), Expect = 1e-29, Method: Composition-based stats. Identities = 54/132 (40%), Positives = 71/132 (53%), Gaps = 5/132 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 +G F LR F T +YP +K T+ R+ G H L RY +G E+CI C+LC CPA Sbjct: 7 LGGFGTTLRTMFSKPVTESYPEQKEPTAARYHGRHQLNRYADGLEKCIGCELCAWSCPAD 66 Query: 77 AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E R G R Y I+ ++CI CGLC +ACP A+ ++E A R Sbjct: 67 AIYVEGADNTDEERFSPGERYGRVYQINYLRCIGCGLCVKACPTRALTMTNDYEMADGER 126 Query: 132 QELYYDKERLLN 143 EL YDK+ LL Sbjct: 127 AELIYDKDHLLA 138 >gi|209542887|ref|YP_002275116.1| NADH-quinone oxidoreductase subunit I [Gluconacetobacter diazotrophicus PAl 5] gi|209530564|gb|ACI50501.1| NADH-quinone oxidoreductase, chain I [Gluconacetobacter diazotrophicus PAl 5] Length = 170 Score = 132 bits (332), Expect = 1e-29, Method: Composition-based stats. Identities = 48/133 (36%), Positives = 72/133 (54%), Gaps = 2/133 (1%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + + + +L R+ + T+ YP K PR+RG L R P+G+ERC+AC LC Sbjct: 1 MFDILRTLWLTFRHMTHRRVTVGYPETKPPLPPRYRGRIILSRDPDGQERCVACGLCAVA 60 Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 CP I+++ + G + I+ +CI+CG C+EACP AI P+FE + R Sbjct: 61 CPVDCISLQKTEQD--GRWYPDYFRINFSRCIFCGFCEEACPTYAIQLTPDFEMSEYVRP 118 Query: 133 ELYYDKERLLNNG 145 L Y+KE LL +G Sbjct: 119 SLVYEKEDLLISG 131 >gi|77164629|ref|YP_343154.1| NADH dehydrogenase subunit I [Nitrosococcus oceani ATCC 19707] gi|254433116|ref|ZP_05046624.1| NADH-quinone oxidoreductase, chain I subfamily, putative [Nitrosococcus oceani AFC27] gi|110287763|sp|Q3JC22|NUOI1_NITOC RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName: Full=NADH dehydrogenase I subunit I 1; AltName: Full=NDH-1 subunit I 1 gi|76882943|gb|ABA57624.1| NADH dehydrogenase subunit I [Nitrosococcus oceani ATCC 19707] gi|207089449|gb|EDZ66720.1| NADH-quinone oxidoreductase, chain I subfamily, putative [Nitrosococcus oceani AFC27] Length = 180 Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 52/138 (37%), Positives = 72/138 (52%), Gaps = 1/138 (0%) Query: 8 VSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACK 67 + + L + + + + F+ K TI YP E+ PR+RG L R P+GEERC+AC Sbjct: 5 LKNISLGSELKSLWTVFLHLFQPKATIQYPEERPYIPPRWRGRIILSRDPDGEERCVACN 64 Query: 68 LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 LC CP I ++ G + I+ +CI+CG C+EACP AI P+FE Sbjct: 65 LCAVACPVDCIALQKTED-EQGRWYPEFFRINFSRCIFCGFCEEACPTYAIQLTPDFEMG 123 Query: 128 TETRQELYYDKERLLNNG 145 R L Y+KE LL NG Sbjct: 124 EYERPNLVYEKEDLLING 141 >gi|71733335|ref|YP_275286.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. phaseolicola 1448A] gi|257485447|ref|ZP_05639488.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289625433|ref|ZP_06458387.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649284|ref|ZP_06480627.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. aesculi str. 2250] gi|289679207|ref|ZP_06500097.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. syringae FF5] gi|298487555|ref|ZP_07005597.1| NADH-ubiquinone oxidoreductase chain I [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|302185030|ref|ZP_07261703.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. syringae 642] gi|110287765|sp|Q48H47|NUOI_PSE14 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|71553888|gb|AAZ33099.1| NADH-quinone oxidoreductase, I subunit [Pseudomonas syringae pv. phaseolicola 1448A] gi|298157939|gb|EFH99017.1| NADH-ubiquinone oxidoreductase chain I [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|320323795|gb|EFW79879.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. glycinea str. B076] gi|320327934|gb|EFW83939.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. glycinea str. race 4] gi|330866831|gb|EGH01540.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. aesculi str. 0893_23] gi|330881176|gb|EGH15325.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. glycinea str. race 4] gi|330900634|gb|EGH32053.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. japonica str. M301072PT] gi|330954556|gb|EGH54816.1| NADH dehydrogenase subunit I [Pseudomonas syringae Cit 7] gi|330981363|gb|EGH79466.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. aptata str. DSM 50252] gi|330987949|gb|EGH86052.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. lachrymans str. M301315] gi|331010720|gb|EGH90776.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 182 Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 53/141 (37%), Positives = 77/141 (54%), Gaps = 8/141 (5%) Query: 12 FLKEFVGA-------FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64 ++ + V + + F+ + T+ YP E+ PR+RG L R P+GEERC+ Sbjct: 4 YIGDIVKGTGTQLRSLVMVFGHGFRKRDTLQYPEEQVYLPPRYRGRIVLTRDPDGEERCV 63 Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 AC LC CP I+++ DG + I+ +CI+CGLC+EACP AI P+F Sbjct: 64 ACNLCAVACPVGCISLQKAE-TEDGRWYPDFFRINFSRCIFCGLCEEACPTTAIQLTPDF 122 Query: 125 EFATETRQELYYDKERLLNNG 145 E A RQ+L Y+KE LL +G Sbjct: 123 EMADFKRQDLVYEKEDLLISG 143 >gi|237809387|ref|YP_002893827.1| NADH dehydrogenase subunit I [Tolumonas auensis DSM 9187] gi|259514790|sp|C4LB38|NUOI_TOLAT RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|237501648|gb|ACQ94241.1| NADH-quinone oxidoreductase, chain I [Tolumonas auensis DSM 9187] Length = 180 Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 51/129 (39%), Positives = 75/129 (58%), Gaps = 1/129 (0%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + + + + F+ + T+ YP EK +PR+RG L R P+G+ERC+AC LC CP Sbjct: 14 LRSLAMVFSHSFRPRDTLCYPEEKVPLAPRYRGRIVLTRDPDGDERCVACNLCAVACPVG 73 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 I+++ R G + I+ +CI+CGLC+EACP AI P+FE RQ+L Y Sbjct: 74 CISLQKAERVD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDFEMGEYRRQDLVY 132 Query: 137 DKERLLNNG 145 +KE LL +G Sbjct: 133 EKEDLLISG 141 >gi|206890184|ref|YP_002248752.1| NADH-ubiquinone oxidoreductase 23 kda subunit [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742122|gb|ACI21179.1| NADH-ubiquinone oxidoreductase 23 kda subunit [Thermodesulfovibrio yellowstonii DSM 11347] Length = 198 Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 56/161 (34%), Positives = 85/161 (52%), Gaps = 4/161 (2%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYP-NG 59 M+ ++ +FL E L L+ F TI YPFE+ FRG HAL R P Sbjct: 1 MK-LNEIINKIFLIEIFKGLLLTLKMLFSKPVTIQYPFERRKIHDGFRGRHALVRDPFTD 59 Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 +++CI C C +CP++ I I+ + Y ID +CI+C C EACPV A+V Sbjct: 60 KDKCIGCMRCTTVCPSRCIYIKREKTENK--MVVTDYIIDASRCIFCAYCVEACPVCALV 117 Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDS 160 +FE+++ TR L ++KE+LL N D + S+ R++ + Sbjct: 118 LTEDFEYSSYTRNNLIFNKEQLLKNWDEFASKWTRDVYFNK 158 >gi|70731263|ref|YP_261004.1| NADH dehydrogenase subunit I [Pseudomonas fluorescens Pf-5] gi|110287766|sp|Q4K9S9|NUOI_PSEF5 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|68345562|gb|AAY93168.1| NADH-quinone oxidoreductase, I subunit [Pseudomonas fluorescens Pf-5] Length = 182 Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 53/141 (37%), Positives = 76/141 (53%), Gaps = 8/141 (5%) Query: 12 FLKEFVGA-------FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64 ++ + V + + F+ + T+ YP E PR+RG L R P+GEERC+ Sbjct: 4 YIGDIVKGTGTQLRSLVMVFGHGFRKRDTLQYPEEPVYLPPRYRGRIVLTRDPDGEERCV 63 Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 AC LC CP I+++ DG + I+ +CI+CGLC+EACP AI P+F Sbjct: 64 ACNLCAVACPVGCISLQKAE-TEDGRWYPDFFRINFSRCIFCGLCEEACPTTAIQLTPDF 122 Query: 125 EFATETRQELYYDKERLLNNG 145 E A RQ+L Y+KE LL +G Sbjct: 123 EMAEFKRQDLVYEKEDLLISG 143 >gi|237800535|ref|ZP_04588996.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. oryzae str. 1_6] gi|331023395|gb|EGI03452.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. oryzae str. 1_6] Length = 182 Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 53/141 (37%), Positives = 77/141 (54%), Gaps = 8/141 (5%) Query: 12 FLKEFVGA-------FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64 ++ + V + + F+ + T+ YP E+ PR+RG L R P+GEERC+ Sbjct: 4 YIGDIVKGTGTQLRSMVMVFGHGFRKRDTLQYPEEQVYLPPRYRGRIVLTRDPDGEERCV 63 Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 AC LC CP I+++ DG + I+ +CI+CGLC+EACP AI P+F Sbjct: 64 ACNLCAVACPVGCISLQKAE-TEDGRWYPDFFRINFSRCIFCGLCEEACPTTAIQLTPDF 122 Query: 125 EFATETRQELYYDKERLLNNG 145 E A RQ+L Y+KE LL +G Sbjct: 123 EMADFKRQDLVYEKEDLLISG 143 >gi|260598698|ref|YP_003211269.1| NADH dehydrogenase subunit I [Cronobacter turicensis z3032] gi|260217875|emb|CBA32420.1| NADH-quinone oxidoreductase subunit I [Cronobacter turicensis z3032] Length = 211 Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 55/144 (38%), Positives = 76/144 (52%), Gaps = 8/144 (5%) Query: 9 SFLFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 + LK+ V F LR + F + T YP E PR+RG L R P+G+E Sbjct: 30 KTMTLKDIVVGFGTQLRSIWMIGLHAFSKRETRMYPEEPVYLPPRYRGRIVLTRDPDGQE 89 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RC+AC LC CP I+++ DG + I+ +CI+CG+C+EACP AI Sbjct: 90 RCVACNLCAVACPVGCISLQKAE-TKDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQLT 148 Query: 122 PNFEFATETRQELYYDKERLLNNG 145 P+FE RQ+L Y+KE LL +G Sbjct: 149 PDFELGEFKRQDLVYEKEDLLISG 172 >gi|301631489|ref|XP_002944830.1| PREDICTED: hypothetical protein LOC100488392 [Xenopus (Silurana) tropicalis] Length = 1458 Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 69/120 (57%), Positives = 79/120 (65%), Gaps = 1/120 (0%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 + + L E L RY F K T+ YP EK SPRFRG HALRRY NGEER Sbjct: 1160 LLIDFLKSFILWELAKGMVLTGRYAFARKVTVYYPEEKTPLSPRFRGLHALRRYDNGEER 1219 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIACKLCEA+CPA AITIES R G+RRT RYDID+ KCI+CG C+E+CPVD+I Sbjct: 1220 CIACKLCEAVCPAMAITIESDVRAD-GSRRTTRYDIDLTKCIFCGFCEESCPVDSIKFMD 1278 >gi|28870536|ref|NP_793155.1| NADH dehydrogenase I subunit I [Pseudomonas syringae pv. tomato str. DC3000] gi|213970028|ref|ZP_03398160.1| NADH dehydrogenase I, I subunit [Pseudomonas syringae pv. tomato T1] gi|301381383|ref|ZP_07229801.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. tomato Max13] gi|302062154|ref|ZP_07253695.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. tomato K40] gi|302130464|ref|ZP_07256454.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. tomato NCPPB 1108] gi|81730550|sp|Q87ZQ2|NUOI_PSESM RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|28853784|gb|AAO56850.1| NADH dehydrogenase I, I subunit [Pseudomonas syringae pv. tomato str. DC3000] gi|213925132|gb|EEB58695.1| NADH dehydrogenase I, I subunit [Pseudomonas syringae pv. tomato T1] gi|330875766|gb|EGH09915.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330965585|gb|EGH65845.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. actinidiae str. M302091] gi|331017278|gb|EGH97334.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 182 Score = 131 bits (330), Expect = 2e-29, Method: Composition-based stats. Identities = 53/141 (37%), Positives = 77/141 (54%), Gaps = 8/141 (5%) Query: 12 FLKEFVGA-------FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64 ++ + V + + F+ + T+ YP E+ PR+RG L R P+GEERC+ Sbjct: 4 YIGDIVKGTGTQLRSMVMVFGHGFRKRDTLQYPEEQVYLPPRYRGRIVLTRDPDGEERCV 63 Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 AC LC CP I+++ DG + I+ +CI+CGLC+EACP AI P+F Sbjct: 64 ACNLCAVACPVGCISLQKAE-TEDGRWYPDFFRINFSRCIFCGLCEEACPTTAIQLTPDF 122 Query: 125 EFATETRQELYYDKERLLNNG 145 E A RQ+L Y+KE LL +G Sbjct: 123 EMADFKRQDLVYEKEDLLISG 143 >gi|296165390|ref|ZP_06847931.1| NADH-quinone oxidoreductase subunit I [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295899281|gb|EFG78746.1| NADH-quinone oxidoreductase subunit I [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 175 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 54/139 (38%), Positives = 73/139 (52%), Gaps = 6/139 (4%) Query: 10 FLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69 F FLK F + FK T YP + G +PR+ G H L R+P+G E+CI C+LC Sbjct: 2 FTFLKPIA-GFRVTFSAMFKKPVTEGYPEKPGPVAPRYHGRHQLNRWPDGLEKCIGCELC 60 Query: 70 EAICPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 CPA AI +E R G R Y I+ ++CI CG C EACP A+ ++ Sbjct: 61 AWACPADAIFVESADNTEAERFSPGERYGRAYQINYLRCIGCGFCIEACPTRALTMINDY 120 Query: 125 EFATETRQELYYDKERLLN 143 E A + R +L Y K++LL Sbjct: 121 EMADDNRADLIYGKDQLLA 139 >gi|322417691|ref|YP_004196914.1| NADH-quinone oxidoreductase subunit I [Geobacter sp. M18] gi|320124078|gb|ADW11638.1| NADH-quinone oxidoreductase, chain I [Geobacter sp. M18] Length = 176 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 49/133 (36%), Positives = 68/133 (51%), Gaps = 1/133 (0%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 +KE V + R+ F+ T+ YP E+ RFRG L R P+G ERC+AC LC Sbjct: 7 IKEIVTGLSITFRHIFRKPVTVQYPEERRPMPERFRGSIVLTRDPDGAERCVACYLCSGA 66 Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 CP I++ + +G R V + I+ +CI CGLC EACP AI Sbjct: 67 CPVDCISMAAAE-GENGRRYAVWFRINFSRCILCGLCAEACPTLAIQMSSEMFPCKRQVL 125 Query: 133 ELYYDKERLLNNG 145 ++ Y+KE LL +G Sbjct: 126 DMVYEKEDLLIDG 138 >gi|66046433|ref|YP_236274.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. syringae B728a] gi|81308095|sp|Q4ZRI6|NUOI_PSEU2 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|63257140|gb|AAY38236.1| NADH-quinone oxidoreductase, chain I [Pseudomonas syringae pv. syringae B728a] gi|330972914|gb|EGH72980.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. aceris str. M302273PT] Length = 182 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 53/141 (37%), Positives = 77/141 (54%), Gaps = 8/141 (5%) Query: 12 FLKEFVGA-------FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64 ++ + V + + F+ + T+ YP E+ PR+RG L R P+GEERC+ Sbjct: 4 YIGDIVKGTGTQLRSMVMVFGHGFRKRDTLQYPEEQVYLPPRYRGRIVLTRDPDGEERCV 63 Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 AC LC CP I+++ DG + I+ +CI+CGLC+EACP AI P+F Sbjct: 64 ACNLCAVACPVGCISLQKAE-TEDGRWYPDFFRINFSRCIFCGLCEEACPTTAIQLTPDF 122 Query: 125 EFATETRQELYYDKERLLNNG 145 E A RQ+L Y+KE LL +G Sbjct: 123 EMAEFKRQDLVYEKEDLLISG 143 >gi|258592355|emb|CBE68664.1| NADH-quinone oxidoreductase subunit I (NADH dehydrogenase I subunit I) (NDH-1 subunit I) [NC10 bacterium 'Dutch sediment'] Length = 153 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 52/136 (38%), Positives = 75/136 (55%), Gaps = 5/136 (3%) Query: 12 FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71 + E + ++ F+ T++YP E+ +PR+RG H L +G ERC+ C+LC Sbjct: 1 MITEILKGMATTFKHIFRKPVTVSYPEERLPLAPRYRGLHMLVVGDDGMERCVGCELCAV 60 Query: 72 ICPAQAITIESGP-----RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 CPA AI +E+ R G R Y I M++CI+CG C+EACP +AIV G +E Sbjct: 61 ACPADAIYVEAAENTGQERHSKGERYAKVYKIHMLRCIFCGYCEEACPEEAIVLGKQYEL 120 Query: 127 ATETRQELYYDKERLL 142 A+ R Y KERL+ Sbjct: 121 ASYERGGFVYGKERLM 136 >gi|77459832|ref|YP_349339.1| NADH dehydrogenase subunit I [Pseudomonas fluorescens Pf0-1] gi|110287767|sp|Q3KA56|NUOI_PSEPF RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|77383835|gb|ABA75348.1| NADH dehydrogenase subunit I [Pseudomonas fluorescens Pf0-1] Length = 182 Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats. Identities = 53/141 (37%), Positives = 77/141 (54%), Gaps = 8/141 (5%) Query: 12 FLKEFVGA-------FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64 ++ + V + + F+ + T+ YP E+ PR+RG L R P+GEERC+ Sbjct: 4 YIGDIVKGTGTQLRSLVMVFGHGFRKRDTLQYPEEQVYLPPRYRGRIVLTRDPDGEERCV 63 Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 AC LC CP I+++ DG + I+ +CI+CGLC+EACP AI P+F Sbjct: 64 ACNLCAVACPVGCISLQKAE-TEDGRWYPDFFRINFSRCIFCGLCEEACPTTAIQLTPDF 122 Query: 125 EFATETRQELYYDKERLLNNG 145 E A RQ+L Y+KE LL +G Sbjct: 123 EMAEFKRQDLVYEKEDLLISG 143 >gi|330892471|gb|EGH25132.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. mori str. 301020] Length = 179 Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats. Identities = 53/141 (37%), Positives = 77/141 (54%), Gaps = 8/141 (5%) Query: 12 FLKEFVGA-------FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64 ++ + V + + F+ + T+ YP E+ PR+RG L R P+GEERC+ Sbjct: 4 YIGDIVKGTGTQLRSLVMVFGHGFRKRDTLQYPEEQVYLPPRYRGRIVLTRDPDGEERCV 63 Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 AC LC CP I+++ DG + I+ +CI+CGLC+EACP AI P+F Sbjct: 64 ACNLCAVACPVGCISLQKAE-TEDGRWYPDFFRINFSRCIFCGLCEEACPTTAIQLTPDF 122 Query: 125 EFATETRQELYYDKERLLNNG 145 E A RQ+L Y+KE LL +G Sbjct: 123 EMADFKRQDLVYEKEDLLISG 143 >gi|282860727|ref|ZP_06269793.1| NADH-quinone oxidoreductase, chain I [Streptomyces sp. ACTE] gi|282564463|gb|EFB69999.1| NADH-quinone oxidoreductase, chain I [Streptomyces sp. ACTE] Length = 198 Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats. Identities = 53/136 (38%), Positives = 70/136 (51%), Gaps = 5/136 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V F + + F+ + T YP T+PRF G H L R+P+G E+C+ C+LC CPA Sbjct: 16 VAGFGVTFKAMFRKRLTEQYPETPKVTAPRFHGRHQLNRHPDGLEKCVGCELCAWACPAD 75 Query: 77 AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E R G R Y I+ +CI CGLC EACP A+ +FE A TR Sbjct: 76 AIYVEGADNTDEERYSPGERYGRVYQINYARCILCGLCIEACPTRALTMTNDFELANTTR 135 Query: 132 QELYYDKERLLNNGDR 147 L Y K+ LL + Sbjct: 136 ASLIYTKDELLAGLEE 151 >gi|161502534|ref|YP_001569646.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863881|gb|ABX20504.1| hypothetical protein SARI_00578 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|323130652|gb|ADX18082.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326628528|gb|EGE34871.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 190 Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats. Identities = 57/152 (37%), Positives = 78/152 (51%), Gaps = 8/152 (5%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHAL 53 M + + LKE + F +R + F + T YP E PR+RG L Sbjct: 1 MAGAIRDTKTMTLKELLVGFGTQVRSIWMIGLHAFAKRETRMYPEEPVYLPPRYRGRIVL 60 Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 R P+GEERC+AC LC CP I+++ DG + I+ +CI+CGLC+EAC Sbjct: 61 TRDPDGEERCVACNLCAVACPVGCISLQKAE-TKDGRWYPEFFRINFSRCIFCGLCEEAC 119 Query: 114 PVDAIVEGPNFEFATETRQELYYDKERLLNNG 145 P AI P+FE RQ+L Y+KE LL +G Sbjct: 120 PTTAIQLTPDFELGEYKRQDLVYEKEDLLISG 151 >gi|168700377|ref|ZP_02732654.1| NADH-quinone oxidoreductase, chain I [Gemmata obscuriglobus UQM 2246] Length = 188 Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats. Identities = 49/141 (34%), Positives = 75/141 (53%), Gaps = 5/141 (3%) Query: 11 LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70 L++ V L + K K T YP ++ +P +RG H L R G +C+AC +C Sbjct: 22 LYIPALVAGLKTTLGHMVKPKITEQYPEQEPKLTPNYRGVHRLNRDAAGRVKCVACYMCA 81 Query: 71 AICPAQAITIESGPRCHDGT-----RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CPA I I + P D + + ID ++CIYCG+C+EACPVDAI ++ Sbjct: 82 TACPAHCIDIVAAPAPADWQKDGREKYPETFVIDELRCIYCGMCEEACPVDAIELTTLYD 141 Query: 126 FATETRQELYYDKERLLNNGD 146 +R+++ +DKE+LL+ D Sbjct: 142 LTGLSREQMVFDKEKLLSVFD 162 >gi|226944925|ref|YP_002799998.1| NADH dehydrogenase subunit I [Azotobacter vinelandii DJ] gi|226719852|gb|ACO79023.1| NADH-quinone oxidoreductase, chain I [Azotobacter vinelandii DJ] Length = 182 Score = 131 bits (329), Expect = 4e-29, Method: Composition-based stats. Identities = 51/129 (39%), Positives = 75/129 (58%), Gaps = 1/129 (0%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + + + + F+ + T+ YP E PR+RG L R P+GEERC+AC LC CP Sbjct: 16 LRSLVMVFSHAFRKRDTLQYPEEPVYLPPRYRGRIVLTRDPDGEERCVACNLCAVACPVG 75 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 I+++ + DG + I+ +CI+CGLC+EACP AI P+FE + RQEL Y Sbjct: 76 CISLQKAEK-EDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDFEMSEYKRQELVY 134 Query: 137 DKERLLNNG 145 +K+ LL +G Sbjct: 135 EKQDLLISG 143 >gi|229591260|ref|YP_002873379.1| NADH dehydrogenase subunit I [Pseudomonas fluorescens SBW25] gi|312961693|ref|ZP_07776191.1| NADH-quinone oxidoreductase, chain I [Pseudomonas fluorescens WH6] gi|229363126|emb|CAY50146.1| NADH Dehydrogenase I chain I [Pseudomonas fluorescens SBW25] gi|311283952|gb|EFQ62535.1| NADH-quinone oxidoreductase, chain I [Pseudomonas fluorescens WH6] Length = 182 Score = 130 bits (328), Expect = 4e-29, Method: Composition-based stats. Identities = 53/141 (37%), Positives = 76/141 (53%), Gaps = 8/141 (5%) Query: 12 FLKEFVGA-------FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64 ++ + V + + F+ + T+ YP E PR+RG L R P+GEERC+ Sbjct: 4 YIGDIVKGTGTQLRSLVMVFGHGFRKRDTLQYPEEAVYLPPRYRGRIVLTRDPDGEERCV 63 Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 AC LC CP I+++ DG + I+ +CI+CGLC+EACP AI P+F Sbjct: 64 ACNLCAVACPVGCISLQKAE-TEDGRWYPDFFRINFSRCIFCGLCEEACPTTAIQLTPDF 122 Query: 125 EFATETRQELYYDKERLLNNG 145 E A RQ+L Y+KE LL +G Sbjct: 123 EMAEFKRQDLVYEKEDLLISG 143 >gi|256380657|ref|YP_003104317.1| NADH dehydrogenase subunit I [Actinosynnema mirum DSM 43827] gi|255924960|gb|ACU40471.1| NADH-quinone oxidoreductase, chain I [Actinosynnema mirum DSM 43827] Length = 188 Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats. Identities = 53/136 (38%), Positives = 72/136 (52%), Gaps = 5/136 (3%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + + V F + FK T YP K T+PR+ G H L R+P+G E+C+ C+LC Sbjct: 3 MLDPVKGFGVTFSTMFKKVVTEEYPEVKKVTAPRYHGRHQLNRHPDGLEKCVGCELCAWA 62 Query: 73 CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CPA AI +E R G R Y I+ ++CI CGLC EACP ++ FE A Sbjct: 63 CPADAIFVEGGDNTEEARFSPGERYGADYQINYLRCIGCGLCIEACPTRSLTMTNEFELA 122 Query: 128 TETRQELYYDKERLLN 143 + RQ+L + KE LL Sbjct: 123 DDDRQKLIFTKEDLLA 138 >gi|213018798|ref|ZP_03334606.1| NADH dehydrogenase I, I subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|212995749|gb|EEB56389.1| NADH dehydrogenase I, I subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 125 Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats. Identities = 95/124 (76%), Positives = 103/124 (83%), Gaps = 1/124 (0%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 EKG SPRFRGEHALRRYPNGEERCIACKLCE ICPAQAI IE+ R DG+RRT RYDI Sbjct: 2 EKGPLSPRFRGEHALRRYPNGEERCIACKLCEVICPAQAIVIEAEER-EDGSRRTTRYDI 60 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158 DM KCIYCGLCQEACPVDAIVEGPNFEFATETR+EL Y+KE+LL NG+ WE I + Sbjct: 61 DMTKCIYCGLCQEACPVDAIVEGPNFEFATETREELMYNKEKLLRNGEVWEEAIALRLKK 120 Query: 159 DSPY 162 + PY Sbjct: 121 NRPY 124 >gi|300114500|ref|YP_003761075.1| NADH-quinone oxidoreductase subunit I [Nitrosococcus watsonii C-113] gi|299540437|gb|ADJ28754.1| NADH-quinone oxidoreductase, chain I [Nitrosococcus watsonii C-113] Length = 180 Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats. Identities = 52/138 (37%), Positives = 72/138 (52%), Gaps = 1/138 (0%) Query: 8 VSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACK 67 + L L + + + + F+ K TI YP E+ PR+RG L R P+GEERC+AC Sbjct: 5 LKNLSLGSELKSLWTVFLHLFQPKATIQYPEERPYIPPRWRGRIILSRDPDGEERCVACN 64 Query: 68 LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 LC CP I ++ G + I+ +CI+CG C+EACP AI P+FE Sbjct: 65 LCAVACPVDCIALQKTED-EQGRWYPEFFRINFSRCIFCGFCEEACPTYAIQLTPDFEMG 123 Query: 128 TETRQELYYDKERLLNNG 145 R L Y+KE LL +G Sbjct: 124 EYERPNLVYEKEDLLISG 141 >gi|313679593|ref|YP_004057332.1| NADH dehydrogenase subunit i [Oceanithermus profundus DSM 14977] gi|313152308|gb|ADR36159.1| NADH dehydrogenase subunit I [Oceanithermus profundus DSM 14977] Length = 176 Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats. Identities = 57/146 (39%), Positives = 75/146 (51%), Gaps = 7/146 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 A + L++ F TI YP PRF G H L R+P+G E+CI C LC A CPA Sbjct: 6 LAKAMGITLKHLFSKPVTIPYPSAPVPLKPRFHGRHVLTRHPDGLEKCIGCSLCAAACPA 65 Query: 76 QAITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 AI +E + G R Y+I+M++CI+CGLC+EACP AIV G FE A Sbjct: 66 YAIYVEPDENDPENPVSAGERYAKVYEINMLRCIFCGLCEEACPTGAIVLGNEFELADYV 125 Query: 131 RQELYYDKERLLN--NGDRWESEIVR 154 + Y KE LL G + + + Sbjct: 126 YSDFVYGKEDLLVDTVGSKPQRREAQ 151 >gi|146307442|ref|YP_001187907.1| NADH dehydrogenase subunit I [Pseudomonas mendocina ymp] gi|145575643|gb|ABP85175.1| NADH dehydrogenase subunit I [Pseudomonas mendocina ymp] Length = 182 Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats. Identities = 51/129 (39%), Positives = 73/129 (56%), Gaps = 1/129 (0%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + + + + F+ + T+ YP E PR+RG L R P+GEERC+AC LC CP Sbjct: 16 LRSLVMVFSHGFRKRDTLQYPEEPVYLPPRYRGRIVLTRDPDGEERCVACNLCAVACPVG 75 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 I+++ DG + I+ +CI+CGLC+EACP AI P+FE RQ+L Y Sbjct: 76 CISLQKAE-TDDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDFEMGEYKRQDLVY 134 Query: 137 DKERLLNNG 145 +KE LL +G Sbjct: 135 EKEDLLISG 143 >gi|134103322|ref|YP_001108983.1| NADH dehydrogenase subunit I [Saccharopolyspora erythraea NRRL 2338] gi|291004459|ref|ZP_06562432.1| NADH dehydrogenase subunit I [Saccharopolyspora erythraea NRRL 2338] gi|156633540|sp|A4FPT3|NUOI_SACEN RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|133915945|emb|CAM06058.1| NADH dehydrogenase (quinone) [Saccharopolyspora erythraea NRRL 2338] Length = 188 Score = 130 bits (328), Expect = 5e-29, Method: Composition-based stats. Identities = 49/132 (37%), Positives = 71/132 (53%), Gaps = 5/132 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + F + F+ T YP K +PRF G+H L R+P+G E+C+ C+LC CPA Sbjct: 7 IKGFGVTFSTMFRKVVTEEYPEVKKIPAPRFHGKHQLNRHPDGLEKCVGCELCAWACPAD 66 Query: 77 AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E R G R + Y I+ ++CI CGLC EACP ++ +E A + R Sbjct: 67 AIFVEGGTNTEDERYSPGERYGMDYQINYLRCIGCGLCIEACPTRSLTMTNEYETADDNR 126 Query: 132 QELYYDKERLLN 143 ++L + KE LL Sbjct: 127 RDLIFTKEDLLA 138 >gi|258651224|ref|YP_003200380.1| NADH-quinone oxidoreductase, chain I [Nakamurella multipartita DSM 44233] gi|258554449|gb|ACV77391.1| NADH-quinone oxidoreductase, chain I [Nakamurella multipartita DSM 44233] Length = 214 Score = 130 bits (327), Expect = 5e-29, Method: Composition-based stats. Identities = 50/136 (36%), Positives = 69/136 (50%), Gaps = 5/136 (3%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + V F + FK T +YP +PR+ G H L R+P+G E+C+ C+LC Sbjct: 3 FLDPVKGFGVTFATMFKPVVTEDYPKNPEQPAPRYHGRHQLNRHPDGLEKCVGCELCAWA 62 Query: 73 CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CPA AI +E R G R Y I+ ++CI CGLC EACP ++ +E A Sbjct: 63 CPADAIFVEGGDNTDEERYSPGERYGKNYQINYLRCIGCGLCIEACPTRSLTMTNEYELA 122 Query: 128 TETRQELYYDKERLLN 143 + RQ L Y K+ LL Sbjct: 123 DDDRQRLIYTKDMLLA 138 >gi|330503264|ref|YP_004380133.1| NADH dehydrogenase subunit I [Pseudomonas mendocina NK-01] gi|328917550|gb|AEB58381.1| NADH dehydrogenase subunit I [Pseudomonas mendocina NK-01] Length = 182 Score = 130 bits (327), Expect = 5e-29, Method: Composition-based stats. Identities = 51/129 (39%), Positives = 73/129 (56%), Gaps = 1/129 (0%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + + + + F+ + T+ YP E PR+RG L R P+GEERC+AC LC CP Sbjct: 16 LRSLAMVFSHGFRKRDTLQYPEEPVYLPPRYRGRIVLTRDPDGEERCVACNLCAVACPVG 75 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 I+++ DG + I+ +CI+CGLC+EACP AI P+FE RQ+L Y Sbjct: 76 CISLQKAE-TDDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDFEMGEFKRQDLVY 134 Query: 137 DKERLLNNG 145 +KE LL +G Sbjct: 135 EKEDLLISG 143 >gi|315605120|ref|ZP_07880172.1| NADH-quinone oxidoreductase subunit I [Actinomyces sp. oral taxon 180 str. F0310] gi|315313227|gb|EFU61292.1| NADH-quinone oxidoreductase subunit I [Actinomyces sp. oral taxon 180 str. F0310] Length = 217 Score = 130 bits (327), Expect = 5e-29, Method: Composition-based stats. Identities = 52/131 (39%), Positives = 72/131 (54%), Gaps = 5/131 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + + + L FF+ T YP E PRF G H L RY +G E+C+ C+LC CPA Sbjct: 27 MAGYGVTLSSFFRPTVTEQYPREPARVMPRFHGRHQLNRYDDGLEKCVGCELCAWACPAD 86 Query: 77 AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E + G R Y I+ ++CI+CG+C EACP A+ +FE AT TR Sbjct: 87 AIFVEAASNTPDEQYSAGERYGRVYQINYLRCIFCGMCIEACPTRALTMTNDFEIATYTR 146 Query: 132 QELYYDKERLL 142 ++ Y+KE LL Sbjct: 147 EDDIYEKEDLL 157 >gi|282891842|ref|ZP_06300322.1| hypothetical protein pah_c198o033 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281498275|gb|EFB40614.1| hypothetical protein pah_c198o033 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 157 Score = 130 bits (327), Expect = 5e-29, Method: Composition-based stats. Identities = 52/134 (38%), Positives = 73/134 (54%), Gaps = 5/134 (3%) Query: 15 EFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP 74 + F+ L++ F TI YP EK R RG H L ++ +G+ERC+ C+LC +CP Sbjct: 10 SMLRGLFIVLKHMFIKPVTIQYPEEKRKLPERSRGRHYLTKWEDGKERCVGCELCAIVCP 69 Query: 75 AQAIT-----IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 AQAI E G R + I+M++CI+CG C+EACP AIV G +E + Sbjct: 70 AQAIYVKPSENEPKNEHSHGERYASDFQINMLRCIFCGYCEEACPTGAIVLGNQYELSGY 129 Query: 130 TRQELYYDKERLLN 143 TR+ L Y K+ L Sbjct: 130 TRESLIYTKDMLTE 143 >gi|84494922|ref|ZP_00994041.1| NuoI, NADH dehydrogenase subunit [Janibacter sp. HTCC2649] gi|84384415|gb|EAQ00295.1| NuoI, NADH dehydrogenase subunit [Janibacter sp. HTCC2649] Length = 206 Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats. Identities = 54/149 (36%), Positives = 73/149 (48%), Gaps = 10/149 (6%) Query: 5 RCNVSFLFLKEFV---GAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 F + G F + F+ T YP K T+ RF G H L R+P+G E Sbjct: 3 DEKKKAGFFSDIFAPVGGFGVTFATMFRKVATTEYPEVKRPTAQRFHGRHQLNRHPDGLE 62 Query: 62 RCIACKLCEAICPAQAITIE-------SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 +C+ C+LC CPA AI +E SG R G R Y I+ ++CI+CGLC EACP Sbjct: 63 KCVGCELCAWACPADAILVEGANNDDASGQRFSPGERYGRVYQINYLRCIFCGLCIEACP 122 Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLN 143 A+ +E A R +L + KE+LL Sbjct: 123 TRALTMTNEYELADNNRADLIFTKEQLLA 151 >gi|257459158|ref|ZP_05624277.1| 4Fe-4S binding domain protein [Campylobacter gracilis RM3268] gi|257443543|gb|EEV18667.1| 4Fe-4S binding domain protein [Campylobacter gracilis RM3268] Length = 401 Score = 130 bits (327), Expect = 6e-29, Method: Composition-based stats. Identities = 59/147 (40%), Positives = 79/147 (53%), Gaps = 7/147 (4%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKA--KTTINYPFEKGSTSPRFRGEHALRRY-PNGE 60 R ++ F E ++ L+ FK T+ YP EK PR+RG H L R +G Sbjct: 20 LRRFLARTFNGELFVGLWVVLKNMFKRGGSHTLRYPMEKFVMPPRYRGVHKLMRLLESGS 79 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCI C LCE IC A I +E+ DG ++ Y I++ +C+YCGLC + CP AIV Sbjct: 80 ERCIGCGLCEKICVANCIAMETSL-GSDGRKKVDNYSINLGRCVYCGLCADVCPEIAIVH 138 Query: 121 GPNFEFATETRQELYYD-KERLLNNGD 146 G +E A+E R YY KE LL G+ Sbjct: 139 GCEYELASEQRA--YYGFKEDLLIRGE 163 >gi|330958152|gb|EGH58412.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. maculicola str. ES4326] Length = 174 Score = 130 bits (326), Expect = 7e-29, Method: Composition-based stats. Identities = 53/141 (37%), Positives = 77/141 (54%), Gaps = 8/141 (5%) Query: 12 FLKEFVGA-------FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64 ++ + V + + F+ + T+ YP E+ PR+RG L R P+GEERC+ Sbjct: 4 YIGDIVKGTGTQLRSMVMVFGHGFRKRDTLQYPEEQVYLPPRYRGRIVLTRDPDGEERCV 63 Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 AC LC CP I+++ DG + I+ +CI+CGLC+EACP AI P+F Sbjct: 64 ACNLCAVACPVGCISLQKAE-TEDGRWYPDFFRINFSRCIFCGLCEEACPTTAIQLTPDF 122 Query: 125 EFATETRQELYYDKERLLNNG 145 E A RQ+L Y+KE LL +G Sbjct: 123 EMADFKRQDLVYEKEDLLISG 143 >gi|291298806|ref|YP_003510084.1| NADH-quinone oxidoreductase subunit I [Stackebrandtia nassauensis DSM 44728] gi|290568026|gb|ADD40991.1| NADH-quinone oxidoreductase, chain I [Stackebrandtia nassauensis DSM 44728] Length = 185 Score = 130 bits (326), Expect = 7e-29, Method: Composition-based stats. Identities = 51/132 (38%), Positives = 75/132 (56%), Gaps = 5/132 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 +F + + FK + T YP + T+PR+ G H L R+P+G E+C+ C+LC CPA Sbjct: 5 AKSFGVTFAHMFKKQVTEKYPEVRTPTAPRYHGRHILNRHPDGLEKCVGCELCAWACPAD 64 Query: 77 AITIESGP-----RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E G R G R V Y I+ +CI+CGLC EACP ++ +E A + R Sbjct: 65 AIFVEGGDNTDKTRYSPGERYAVDYQINYARCIFCGLCIEACPTRSLTMSNEYELAADNR 124 Query: 132 QELYYDKERLLN 143 ++L + KE+LL Sbjct: 125 RDLIFTKEQLLA 136 >gi|284992917|ref|YP_003411471.1| NADH-quinone oxidoreductase, chain I [Geodermatophilus obscurus DSM 43160] gi|284066162|gb|ADB77100.1| NADH-quinone oxidoreductase, chain I [Geodermatophilus obscurus DSM 43160] Length = 211 Score = 130 bits (326), Expect = 8e-29, Method: Composition-based stats. Identities = 51/136 (37%), Positives = 71/136 (52%), Gaps = 5/136 (3%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 L F + F+ TT YP T PR+ G H L R+P+G E+C+ C+LC Sbjct: 25 LPGPGQGFGVTFAQIFRKVTTEEYPEVPKVTKPRYHGRHVLNRHPDGLEKCVGCELCAWA 84 Query: 73 CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CPA AI +E R G R Y I+ ++CI+CGLC EACP ++ +FE A Sbjct: 85 CPADAIYVEGGDNTEDERYSPGERYGRVYQINYLRCIFCGLCIEACPTRSLTMSNDFELA 144 Query: 128 TETRQELYYDKERLLN 143 + R +L Y KE+L+ Sbjct: 145 DDNRADLIYTKEQLMA 160 >gi|92115240|ref|YP_575168.1| NADH dehydrogenase subunit I [Chromohalobacter salexigens DSM 3043] gi|110287760|sp|Q1QST9|NUOI_CHRSD RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|91798330|gb|ABE60469.1| NADH dehydrogenase subunit I [Chromohalobacter salexigens DSM 3043] Length = 179 Score = 130 bits (326), Expect = 8e-29, Method: Composition-based stats. Identities = 53/129 (41%), Positives = 75/129 (58%), Gaps = 1/129 (0%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + + + F+ + T+ YP E SPR+RG L R P+GEERC+AC LC CP Sbjct: 13 LRTLGMVFMHAFRKRETLQYPEEPVYLSPRYRGRIVLTRDPDGEERCVACNLCAVACPVA 72 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 I+++ G R G + I+ +CI+CGLC+EACP AI P+FE + RQEL Y Sbjct: 73 CISLQKGERDD-GRWYPEFFRINFSRCIFCGLCEEACPTSAIQLTPDFEMSEYRRQELVY 131 Query: 137 DKERLLNNG 145 +K+ LL +G Sbjct: 132 EKDDLLISG 140 >gi|222054369|ref|YP_002536731.1| NADH-quinone oxidoreductase, chain I [Geobacter sp. FRC-32] gi|221563658|gb|ACM19630.1| NADH-quinone oxidoreductase, chain I [Geobacter sp. FRC-32] Length = 176 Score = 129 bits (325), Expect = 9e-29, Method: Composition-based stats. Identities = 52/127 (40%), Positives = 71/127 (55%), Gaps = 1/127 (0%) Query: 19 AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78 + ++ F+ TI YP EK + PRFR L R P+G ERC+AC LC A CP I Sbjct: 13 GLWTTWKHIFRKPVTIQYPEEKRTPYPRFRARIVLTRDPDGGERCVACYLCSAACPVDCI 72 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 +++S +G R + I+ +CIYCGLC EACP AI ++EF E+ Y+K Sbjct: 73 SMQSVE-GPNGRRYAEWFRINFARCIYCGLCAEACPTLAIQMTTDYEFCKRDIMEMIYEK 131 Query: 139 ERLLNNG 145 E LL +G Sbjct: 132 EDLLIDG 138 >gi|332971171|gb|EGK10135.1| NADH-quinone oxidoreductase subunit I [Psychrobacter sp. 1501(2011)] Length = 182 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 54/144 (37%), Positives = 79/144 (54%), Gaps = 3/144 (2%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 + + V +F V + ++ + F+ + TI YP + PRFRG L R P+G+E Sbjct: 3 KTLKNTVVGMFT--IVRSMWMVNSHAFRPRDTILYPEQPVPVPPRFRGRIVLTRDPDGDE 60 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RC+AC LC CP I+++ R DG + I+ +CI+CG+C+EACP AI Sbjct: 61 RCVACNLCAVACPVACISLQKAER-EDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQLT 119 Query: 122 PNFEFATETRQELYYDKERLLNNG 145 P+FE RQ L Y+KE LL +G Sbjct: 120 PDFELGEYVRQNLVYEKEHLLISG 143 >gi|329944210|ref|ZP_08292469.1| NADH-quinone oxidoreductase, chain I [Actinomyces sp. oral taxon 170 str. F0386] gi|328530940|gb|EGF57796.1| NADH-quinone oxidoreductase, chain I [Actinomyces sp. oral taxon 170 str. F0386] Length = 237 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 51/133 (38%), Positives = 69/133 (51%), Gaps = 6/133 (4%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V + + + F+ T YPFE PR+ G H L RY +G E+CI C+LC CPA Sbjct: 32 VAGYGVTISSMFRPVVTEQYPFEPPQVMPRYHGRHQLNRYDDGLEKCIGCELCAWACPAD 91 Query: 77 AIT-----IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF-EFATET 130 AI E G + G R Y I+ ++CI+CG+C EACP A+ +F E Sbjct: 92 AIYVEAASNEPGAQYSPGERYGRVYQINYLRCIFCGMCIEACPTRALTMSTDFDELVGPG 151 Query: 131 RQELYYDKERLLN 143 R+ L Y+KE LL Sbjct: 152 REGLIYEKEDLLA 164 >gi|330810470|ref|YP_004354932.1| NADH-quinone oxidoreductase subunit I [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|75527983|sp|Q8RQ74|NUOI_PSEFL RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|19483810|gb|AAL89571.1| NADH dehydrogenase I subunit I [Pseudomonas fluorescens] gi|327378578|gb|AEA69928.1| NADH-quinone oxidoreductase subunit I [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 182 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 55/141 (39%), Positives = 78/141 (55%), Gaps = 8/141 (5%) Query: 12 FLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64 ++ + V LR + F+ + T+ YP E +PR+RG L R P+GEERC+ Sbjct: 4 YIGDIVKGTGTQLRSLVMIFGHGFRKRDTLQYPEEPVYLAPRYRGRIVLTRDPDGEERCV 63 Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 AC LC CP I+++ DG + I+ +CI+CGLC+EACP AI P+F Sbjct: 64 ACNLCAVACPVGCISLQKAE-TEDGRWYPDFFRINFSRCIFCGLCEEACPTTAIQLTPDF 122 Query: 125 EFATETRQELYYDKERLLNNG 145 E A RQ+L Y+KE LL +G Sbjct: 123 EMAEFKRQDLVYEKEDLLISG 143 >gi|148653489|ref|YP_001280582.1| NADH dehydrogenase subunit I [Psychrobacter sp. PRwf-1] gi|148572573|gb|ABQ94632.1| NADH-quinone oxidoreductase, chain I [Psychrobacter sp. PRwf-1] Length = 182 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 54/144 (37%), Positives = 79/144 (54%), Gaps = 3/144 (2%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 + + V +F V + ++ + F+ + TI YP + PRFRG L R P+G+E Sbjct: 3 KTLKNTVVGMFT--IVRSMWMVNSHAFRPRDTILYPEQPVPVPPRFRGRIVLTRDPDGDE 60 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RC+AC LC CP I+++ R DG + I+ +CI+CG+C+EACP AI Sbjct: 61 RCVACNLCAVACPVACISLQKAER-EDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQLT 119 Query: 122 PNFEFATETRQELYYDKERLLNNG 145 P+FE RQ L Y+KE LL +G Sbjct: 120 PDFELGEYVRQNLVYEKEHLLISG 143 >gi|294056104|ref|YP_003549762.1| NADH-quinone oxidoreductase, chain I [Coraliomargarita akajimensis DSM 45221] gi|293615437|gb|ADE55592.1| NADH-quinone oxidoreductase, chain I [Coraliomargarita akajimensis DSM 45221] Length = 183 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 49/141 (34%), Positives = 73/141 (51%), Gaps = 7/141 (4%) Query: 12 FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71 FL + L FK T+ YP E+ +RG L + PNG E+C++C+LCE Sbjct: 19 FLPQIATGLKTTLGQMFKKSVTLQYPDERPVIPDNYRGVPTLVKDPNGREKCVSCQLCEF 78 Query: 72 ICPAQAITI-------ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 +CP +AI I E P + ++I+M++CIYCG CQE CP +AI F Sbjct: 79 VCPPKAIRITPGEIDAEEEPDRAHVEKAPKEFEINMLRCIYCGFCQEVCPEEAIFLQDIF 138 Query: 125 EFATETRQELYYDKERLLNNG 145 + +R+E+ DK++L G Sbjct: 139 SLSGYSREEMVNDKKKLYELG 159 >gi|326329618|ref|ZP_08195940.1| NADH-quinone oxidoreductase, I subunit [Nocardioidaceae bacterium Broad-1] gi|325952614|gb|EGD44632.1| NADH-quinone oxidoreductase, I subunit [Nocardioidaceae bacterium Broad-1] Length = 179 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 52/140 (37%), Positives = 71/140 (50%), Gaps = 5/140 (3%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + V F + FK T YP +K T RF G H L R+P+G E+C+ C+LC Sbjct: 12 FWDPVSGFAVTFGTQFKKPVTEQYPQQKEPTEERFHGRHQLNRHPDGLEKCVGCELCAWA 71 Query: 73 CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CPA AI +E R G R Y I+ ++CI CGLC EACP A+ +E A Sbjct: 72 CPADAIYVEGAENTEEERYSPGERYGRVYQINYLRCILCGLCIEACPTRALTMTNEYELA 131 Query: 128 TETRQELYYDKERLLNNGDR 147 +R+ L Y+K+ LL + Sbjct: 132 DTSRESLIYEKQDLLAPLED 151 >gi|320160247|ref|YP_004173471.1| NADH-quinone oxidoreductase subunit I [Anaerolinea thermophila UNI-1] gi|319994100|dbj|BAJ62871.1| NADH-quinone oxidoreductase chain I [Anaerolinea thermophila UNI-1] Length = 163 Score = 129 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 55/133 (41%), Positives = 73/133 (54%), Gaps = 5/133 (3%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 L+ + TI YP EK RF+G H L+RY NG E+CI C LC A CPA Sbjct: 1 MFKGLLTTLKEWTGKPVTIQYPEEKRPVRTRFKGRHVLKRYENGLEKCIGCSLCAAACPA 60 Query: 76 QAITIES-----GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 AI +E+ R G R Y+I+M++CI+CG C++ACP +AIV G N+E + Sbjct: 61 DAIFVEAAENTDDERYSPGERYARVYEINMLRCIFCGFCEDACPTEAIVLGDNYELSFTD 120 Query: 131 RQELYYDKERLLN 143 R + Y KE LL Sbjct: 121 RHQSIYTKEMLLE 133 >gi|256371188|ref|YP_003109012.1| NADH-quinone oxidoreductase, chain I [Acidimicrobium ferrooxidans DSM 10331] gi|256007772|gb|ACU53339.1| NADH-quinone oxidoreductase, chain I [Acidimicrobium ferrooxidans DSM 10331] Length = 229 Score = 129 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 55/137 (40%), Positives = 76/137 (55%), Gaps = 5/137 (3%) Query: 15 EFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP 74 + +G F L LR F+ + T+ YP EK PRF G H L RYP+G E+CI C+LC CP Sbjct: 7 DALGGFRLTLRQVFEPRVTLQYPEEKRPKPPRFHGRHVLNRYPDGMEKCIGCELCAGACP 66 Query: 75 AQAIT-----IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 A+ I + G R Y+I+ ++CI+C LC EACP +AI E FEFA Sbjct: 67 ARCIYVRGANNDPERPTSPGERFGFVYEINYLRCIHCDLCVEACPTEAITESKMFEFAFT 126 Query: 130 TRQELYYDKERLLNNGD 146 R++ Y K L+ + + Sbjct: 127 NREDAIYTKAELVVDDE 143 >gi|326772143|ref|ZP_08231428.1| NADH-quinone oxidoreductase, I subunit [Actinomyces viscosus C505] gi|326638276|gb|EGE39177.1| NADH-quinone oxidoreductase, I subunit [Actinomyces viscosus C505] Length = 236 Score = 129 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 51/133 (38%), Positives = 69/133 (51%), Gaps = 6/133 (4%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V + + + F+ T YPFE PR+ G H L RY +G E+CI C+LC CPA Sbjct: 31 VAGYGVTISSMFRPVVTEQYPFEPPQVMPRYHGRHQLNRYDDGLEKCIGCELCAWACPAD 90 Query: 77 AIT-----IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF-EFATET 130 AI E G + G R Y I+ ++CI+CG+C EACP A+ +F E Sbjct: 91 AIYVEAASNEPGAQYSPGERYGRVYQINYLRCIFCGMCIEACPTRALTMSTDFDELVGPG 150 Query: 131 RQELYYDKERLLN 143 R+ L Y+KE LL Sbjct: 151 REGLIYEKEDLLA 163 >gi|226355367|ref|YP_002785107.1| NADH dehydrogenase (quinone) subunit I [Deinococcus deserti VCD115] gi|259514770|sp|C1D0H9|NUOI_DEIDV RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|226317357|gb|ACO45353.1| putative NADH dehydrogenase (quinone), subunit I (NADH-quinone oxidoreductase, subunit I) [Deinococcus deserti VCD115] Length = 179 Score = 129 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 60/157 (38%), Positives = 80/157 (50%), Gaps = 10/157 (6%) Query: 15 EFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEERCIACKLCEAIC 73 E L L F+ T++YP E+ + PRFRG H L R G E+CI C LC A C Sbjct: 5 EIAKGMGLTLGKLFQKPVTVSYPEERATLKPRFRGRHVLTRHPGTGLEKCIGCSLCAAAC 64 Query: 74 PAQAITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 PA AI +E+G G R Y+I+M++CI+CG+C+EACP A+V G FE A Sbjct: 65 PAYAIYVEAGENDPHDPVSPGERYAKVYEINMLRCIFCGMCEEACPTGAVVLGNEFEMAD 124 Query: 129 ETRQELYYDKERLLNN--GDRWESEIVRNIVTDSPYR 163 ++ Y KE +L G R + N P R Sbjct: 125 YRYNDIIYGKEDMLVGVEGSRAQRRDAAN--AGKPVR 159 >gi|284009327|emb|CBA76492.1| NADH-quinone oxidoreductase chain I [Arsenophonus nasoniae] Length = 180 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 53/142 (37%), Positives = 76/142 (53%), Gaps = 8/142 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LKE V +R + F + T YP E PR+RG L R P+G+ERC Sbjct: 1 MTLKELVVGLATQIRSICMIGLHAFHKRETKMYPEEPVYLPPRYRGRIVLTRDPDGQERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC +CP I+++ + G + I+ +CI+CGLC+EACP AI P+ Sbjct: 61 VACNLCAVVCPVGCISLQKAEQPD-GRWYPEFFQINFSRCIFCGLCEEACPTTAIQLTPD 119 Query: 124 FEFATETRQELYYDKERLLNNG 145 FE RQ+L Y+K+ LL +G Sbjct: 120 FEMGEYQRQDLVYEKQDLLISG 141 >gi|325067546|ref|ZP_08126219.1| NADH-quinone oxidoreductase, chain I [Actinomyces oris K20] Length = 235 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 51/133 (38%), Positives = 69/133 (51%), Gaps = 6/133 (4%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V + + + F+ T YPFE PR+ G H L RY +G E+CI C+LC CPA Sbjct: 31 VAGYGVTISSMFRPVVTEQYPFEPPQVMPRYHGRHQLNRYDDGLEKCIGCELCAWACPAD 90 Query: 77 AIT-----IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF-EFATET 130 AI E G + G R Y I+ ++CI+CG+C EACP A+ +F E Sbjct: 91 AIYVEAASNEPGAQYSPGERYGRVYQINYLRCIFCGMCIEACPTRALTMSTDFDELVGPG 150 Query: 131 RQELYYDKERLLN 143 R+ L Y+KE LL Sbjct: 151 REGLIYEKEDLLA 163 >gi|320095557|ref|ZP_08027220.1| NADH-quinone oxidoreductase subunit I [Actinomyces sp. oral taxon 178 str. F0338] gi|319977465|gb|EFW09145.1| NADH-quinone oxidoreductase subunit I [Actinomyces sp. oral taxon 178 str. F0338] Length = 219 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 50/131 (38%), Positives = 71/131 (54%), Gaps = 5/131 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + + + L FF+ T YP E+ PRF G H L RY +G E+C+ C+LC CPA Sbjct: 29 MAGYGVTLSSFFRPTVTEQYPREEARVMPRFHGRHQLNRYADGLEKCVGCELCAWACPAD 88 Query: 77 AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E + G R Y+I+ ++CI+CG+C EACP A+ FE A TR Sbjct: 89 AIFVEAASNTPDEQYSAGERYGRVYEINYLRCIFCGMCIEACPTRALTMTNEFELAEYTR 148 Query: 132 QELYYDKERLL 142 ++ Y K+ LL Sbjct: 149 EDDIYVKDDLL 159 >gi|320353966|ref|YP_004195305.1| NADH-quinone oxidoreductase subunit I [Desulfobulbus propionicus DSM 2032] gi|320122468|gb|ADW18014.1| NADH-quinone oxidoreductase, chain I [Desulfobulbus propionicus DSM 2032] Length = 212 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 57/152 (37%), Positives = 84/152 (55%), Gaps = 2/152 (1%) Query: 8 VSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG-EERCIAC 66 ++ +F E + L L+ F T YP EK P FRG+HAL R P + +CI C Sbjct: 12 LATIFQAEILQGMTLTLKRLFSKPITRQYPEEKPRIRPGFRGQHALVRDPETKDCKCIGC 71 Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTV-RYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 C +CP++ I I S G+RR + Y I+ ++C+YCG C+E CPV+AIV FE Sbjct: 72 MRCAMVCPSRCIRIRSHKDKEPGSRRIIDCYRIESLRCVYCGYCEEVCPVNAIVLTEVFE 131 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIV 157 + + R LY+ +E+LL N DR+ +E + Sbjct: 132 YGSYERPSLYFTREQLLANWDRFVAEKGAEME 163 >gi|159899734|ref|YP_001545981.1| NADH-quinone oxidoreductase subunit I [Herpetosiphon aurantiacus ATCC 23779] gi|159892773|gb|ABX05853.1| NADH-quinone oxidoreductase, chain I [Herpetosiphon aurantiacus ATCC 23779] Length = 168 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 53/137 (38%), Positives = 72/137 (52%), Gaps = 5/137 (3%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + +Y FK T+ YP K RFRG H L+R+ NG ERCI C LC A CPA Sbjct: 8 YFKGLKTTAKYLFKKPVTVEYPEVKRPVRERFRGRHELKRFANGLERCIGCSLCAAACPA 67 Query: 76 QAITIESGPRCH-----DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 AI + G G R Y+I+M++CI+CG C++ACP +AIV +E A Sbjct: 68 DAIYVVPGQNDPANPRSAGERHAAVYEINMLRCIFCGYCEDACPTNAIVLEHQYELAFYD 127 Query: 131 RQELYYDKERLLNNGDR 147 R+ Y ++ LL D+ Sbjct: 128 RRASIYTQDMLLVAVDK 144 >gi|257453974|ref|ZP_05619250.1| NADH-quinone oxidoreductase subunit i [Enhydrobacter aerosaccus SK60] gi|257448639|gb|EEV23606.1| NADH-quinone oxidoreductase subunit i [Enhydrobacter aerosaccus SK60] Length = 183 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 50/133 (37%), Positives = 71/133 (53%), Gaps = 1/133 (0%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + + + + + TI YP + PRFRG L R P+G+ERC+AC LC Sbjct: 13 FGSILRTLIMVASHATRKRDTILYPEQPVPVPPRFRGRIVLTRDPDGDERCVACNLCAVA 72 Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 CP I+++ R DG + I+ +CI+CG+C+EACP AI P+FE RQ Sbjct: 73 CPVGCISLQKAER-EDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQMTPDFELGEYNRQ 131 Query: 133 ELYYDKERLLNNG 145 L Y+KE LL +G Sbjct: 132 NLVYEKEHLLISG 144 >gi|304398209|ref|ZP_07380083.1| NADH-quinone oxidoreductase, chain I [Pantoea sp. aB] gi|308187597|ref|YP_003931728.1| NADH dehydrogenase I chain I [Pantoea vagans C9-1] gi|304354075|gb|EFM18448.1| NADH-quinone oxidoreductase, chain I [Pantoea sp. aB] gi|308058107|gb|ADO10279.1| NADH dehydrogenase I chain I [Pantoea vagans C9-1] Length = 180 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 53/142 (37%), Positives = 76/142 (53%), Gaps = 8/142 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LK+ V F +R + F + T YP E PR+RG L R P+G+ERC Sbjct: 1 MTLKDIVVGFGTTVRSIWLIGLHAFAKRETQMYPEEPVYLPPRYRGRIVLTRDPDGQERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC CP I+++ DG + I+ +CI+CG+C+EACP AI P+ Sbjct: 61 VACNLCAVACPVGCISLQKAE-TKDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQLTPD 119 Query: 124 FEFATETRQELYYDKERLLNNG 145 FE RQ+L Y+K+ LL +G Sbjct: 120 FELGEFKRQDLVYEKDDLLISG 141 >gi|332296568|ref|YP_004438491.1| NAD(P)H-quinone oxidoreductase subunit I [Thermodesulfobium narugense DSM 14796] gi|332179671|gb|AEE15360.1| NAD(P)H-quinone oxidoreductase subunit I [Thermodesulfobium narugense DSM 14796] Length = 192 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 53/149 (35%), Positives = 79/149 (53%), Gaps = 3/149 (2%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG- 59 M+I + + + L E+ + R K T YP K P FRG AL R P+ Sbjct: 1 MKI-QKLIRDVLLVEWFRGLSVTFRTMLKKPVTRLYPHVKRQPFPGFRGRQALVRDPDKL 59 Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 +ERCI C C+ +CP+ I +E G + R Y ID +CIYCG C E CPV+A+V Sbjct: 60 KERCIMCLRCKTVCPSNCIKVEVGKD-ENNARVLKEYSIDATRCIYCGYCVEVCPVNALV 118 Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRW 148 +E+ + R +L ++K++LL+N D + Sbjct: 119 LTEEYEYLGDKRSDLLFNKDKLLSNWDDF 147 >gi|158958055|sp|Q6MDQ8|NUOI_PARUW RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I Length = 157 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 50/133 (37%), Positives = 74/133 (55%), Gaps = 5/133 (3%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + L++ F+ T+ YP EK R RG H L ++ +G ERC+ C+LC +CPA Sbjct: 11 MMKGLIIVLKHAFQTPVTLRYPEEKRILPARSRGRHYLTKWNDGLERCVGCELCAIVCPA 70 Query: 76 QAIT-----IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 QAI E G G R + I+M++CI+CG C+EACP AIV +E + T Sbjct: 71 QAIYVKPAANEPGHIHSHGERYASDFQINMLRCIFCGYCEEACPTGAIVLSNQYELSAYT 130 Query: 131 RQELYYDKERLLN 143 R+++ Y K+RL Sbjct: 131 REDMIYTKDRLTE 143 >gi|218295768|ref|ZP_03496564.1| NADH-quinone oxidoreductase, chain I [Thermus aquaticus Y51MC23] gi|218243927|gb|EED10454.1| NADH-quinone oxidoreductase, chain I [Thermus aquaticus Y51MC23] Length = 182 Score = 127 bits (320), Expect = 3e-28, Method: Composition-based stats. Identities = 60/151 (39%), Positives = 81/151 (53%), Gaps = 7/151 (4%) Query: 11 LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70 + LK + + L+Y F T+ YP + PRF G H L R+PNG E+CI C LC Sbjct: 1 MTLKALAQSLGITLKYLFSKPVTVPYPDAPVALKPRFHGRHVLTRHPNGLEKCIGCSLCA 60 Query: 71 AICPAQAITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 A CPA AI +E + G R Y+I+M++CI+CGLC+EACP AIV G +FE Sbjct: 61 AACPAYAIYVEPAENDPENPVSAGERYAKVYEINMLRCIFCGLCEEACPTGAIVLGYDFE 120 Query: 126 FATETRQELYYDKERLL--NNGDRWESEIVR 154 A +L Y KE +L G + + R Sbjct: 121 MADYQYSDLIYGKEDMLVDVVGTKPQRREAR 151 >gi|218200865|gb|EEC83292.1| hypothetical protein OsI_28652 [Oryza sativa Indica Group] Length = 673 Score = 127 bits (320), Expect = 3e-28, Method: Composition-based stats. Identities = 66/109 (60%), Positives = 75/109 (68%), Gaps = 1/109 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 L E V L RY F+ K T+ +P EK SPRFRG HALRRY NGEERCIA Sbjct: 341 DFFKSFMLVELVKGMALTGRYAFRRKVTVQFPEEKTPLSPRFRGLHALRRYENGEERCIA 400 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 CKLCEA+CPA AITIES R G+RRT RYDID+ KCI+CG C+E+CP Sbjct: 401 CKLCEAVCPALAITIESDVRAD-GSRRTTRYDIDLTKCIFCGFCEESCP 448 >gi|326561163|gb|EGE11528.1| NADH dehydrogenase subunit I [Moraxella catarrhalis 7169] gi|326561574|gb|EGE11915.1| NADH dehydrogenase subunit I [Moraxella catarrhalis 46P47B1] gi|326567649|gb|EGE17757.1| NADH dehydrogenase subunit I [Moraxella catarrhalis 12P80B1] gi|326567948|gb|EGE18045.1| NADH dehydrogenase subunit I [Moraxella catarrhalis BC1] gi|326569471|gb|EGE19531.1| NADH dehydrogenase subunit I [Moraxella catarrhalis BC8] gi|326572766|gb|EGE22752.1| NADH dehydrogenase subunit I [Moraxella catarrhalis BC7] gi|326574014|gb|EGE23963.1| NADH dehydrogenase subunit I [Moraxella catarrhalis CO72] gi|326577456|gb|EGE27340.1| NADH dehydrogenase subunit I [Moraxella catarrhalis O35E] Length = 182 Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats. Identities = 50/133 (37%), Positives = 74/133 (55%), Gaps = 1/133 (0%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + V + ++ + + + TI YP + PRFRG L R P+G+ERC+AC LC Sbjct: 12 MFTIVRSMWMVNSHALRPRDTILYPEQPVPVPPRFRGRIVLTRDPDGDERCVACNLCAVA 71 Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 CP I+++ R DG + I+ +C++CG+C+EACP AI P+FE RQ Sbjct: 72 CPVGCISLQKAER-EDGRWYPEFFRINFSRCVFCGMCEEACPTTAIQLTPDFELGEYDRQ 130 Query: 133 ELYYDKERLLNNG 145 L Y+KE LL +G Sbjct: 131 NLVYEKEHLLISG 143 >gi|46200214|ref|YP_005881.1| NADH-quinone oxidoreductase chain I [Thermus thermophilus HB27] gi|55980061|ref|YP_143358.1| NADH-quinone oxidoreductase subunit 9 [Thermus thermophilus HB8] gi|2499326|sp|Q56224|NQO9_THET8 RecName: Full=NADH-quinone oxidoreductase subunit 9; AltName: Full=NADH dehydrogenase I subunit 9; AltName: Full=NDH-1 subunit 9 gi|81405222|sp|Q72GD6|NUOI_THET2 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|90109660|pdb|2FUG|9 Chain 9, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus gi|90109668|pdb|2FUG|G Chain G, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus gi|90109676|pdb|2FUG|P Chain P, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus gi|90109684|pdb|2FUG|Y Chain Y, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus gi|258588594|pdb|3I9V|9 Chain 9, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Oxidized, 2 MolASU gi|258588602|pdb|3I9V|G Chain G, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Oxidized, 2 MolASU gi|258588610|pdb|3IAM|9 Chain 9, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Reduced, 2 MolASU, With Bound Nadh gi|258588618|pdb|3IAM|G Chain G, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Reduced, 2 MolASU, With Bound Nadh gi|258588626|pdb|3IAS|9 Chain 9, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Oxidized, 4 MolASU, Re-Refined To 3.15 Angstrom Resolution gi|258588634|pdb|3IAS|G Chain G, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Oxidized, 4 MolASU, Re-Refined To 3.15 Angstrom Resolution gi|258588642|pdb|3IAS|P Chain P, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Oxidized, 4 MolASU, Re-Refined To 3.15 Angstrom Resolution gi|258588650|pdb|3IAS|Y Chain Y, Crystal Structure Of The Hydrophilic Domain Of Respiratory Complex I From Thermus Thermophilus, Oxidized, 4 MolASU, Re-Refined To 3.15 Angstrom Resolution gi|296863610|pdb|3M9S|9 Chain 9, Crystal Structure Of Respiratory Complex I From Thermus Thermophilus gi|296863623|pdb|3M9S|G Chain G, Crystal Structure Of Respiratory Complex I From Thermus Thermophilus gi|1279869|gb|AAA97946.1| NADH dehydrogenase I, subunit NQO9 [Thermus thermophilus] gi|46197842|gb|AAS82254.1| NADH-quinone oxidoreductase chain I [Thermus thermophilus HB27] gi|55771474|dbj|BAD69915.1| NADH-quinone oxidoreductase chain 9 [Thermus thermophilus HB8] Length = 182 Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats. Identities = 59/152 (38%), Positives = 81/152 (53%), Gaps = 7/152 (4%) Query: 11 LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70 + LK + + L+Y F T+ YP + PRF G H L R+PNG E+CI C LC Sbjct: 1 MTLKALAQSLGITLKYLFSKPVTVPYPDAPVALKPRFHGRHVLTRHPNGLEKCIGCSLCA 60 Query: 71 AICPAQAITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 A CPA AI +E + G R Y+I+M++CI+CGLC+EACP AIV G +FE Sbjct: 61 AACPAYAIYVEPAENDPENPVSAGERYAKVYEINMLRCIFCGLCEEACPTGAIVLGYDFE 120 Query: 126 FATETRQELYYDKERLL--NNGDRWESEIVRN 155 A +L Y KE +L G + + + Sbjct: 121 MADYEYSDLVYGKEDMLVDVVGTKPQRREAKR 152 >gi|149374620|ref|ZP_01892394.1| NADH-quinone oxidoreductase, chain I [Marinobacter algicola DG893] gi|149361323|gb|EDM49773.1| NADH-quinone oxidoreductase, chain I [Marinobacter algicola DG893] Length = 182 Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats. Identities = 52/129 (40%), Positives = 76/129 (58%), Gaps = 1/129 (0%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + + + F+ + T+NYP ++ PR+RG L R P+GEERC+AC LC CP Sbjct: 16 LRTLGMVFMHSFRKRETVNYPEQQVYLPPRYRGRIVLTRDPDGEERCVACNLCAVACPVD 75 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 I+++ G + DG + I+ +CI+CG+C+EACP AI P+FE RQ+L Y Sbjct: 76 CISLQKGEQ-EDGRWYPEFFRINFSRCIFCGMCEEACPTSAIQLTPDFEMGEYDRQQLVY 134 Query: 137 DKERLLNNG 145 +KE LL NG Sbjct: 135 EKEDLLING 143 >gi|291618182|ref|YP_003520924.1| NuoI [Pantoea ananatis LMG 20103] gi|291153212|gb|ADD77796.1| NuoI [Pantoea ananatis LMG 20103] gi|327394575|dbj|BAK11997.1| NADH-quinone oxidoreductase chain I NuoI [Pantoea ananatis AJ13355] Length = 180 Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats. Identities = 54/142 (38%), Positives = 75/142 (52%), Gaps = 8/142 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LK+ V F +R + F + T YP E PR+RG L R P+G ERC Sbjct: 1 MTLKDIVVGFGTTVRSIWMIGMHAFAKRETQMYPEEPVYLPPRYRGRIVLTRDPDGAERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC CP I+++ DG + I+ +CI+CGLC+EACP AI P+ Sbjct: 61 VACNLCAVACPVGCISLQKAE-TKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119 Query: 124 FEFATETRQELYYDKERLLNNG 145 FE RQ+L Y+K+ LL +G Sbjct: 120 FELGEFKRQDLVYEKDDLLISG 141 >gi|188533354|ref|YP_001907151.1| NADH dehydrogenase subunit I [Erwinia tasmaniensis Et1/99] gi|259907934|ref|YP_002648290.1| NADH dehydrogenase subunit I [Erwinia pyrifoliae Ep1/96] gi|292488836|ref|YP_003531723.1| NADH dehydrogenase I subunit I [Erwinia amylovora CFBP1430] gi|292899987|ref|YP_003539356.1| NADH dehydrogenase I chain I [Erwinia amylovora ATCC 49946] gi|226737392|sp|B2VIN2|NUOI_ERWT9 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|188028396|emb|CAO96257.1| NADH dehydrogenase I subunit I [Erwinia tasmaniensis Et1/99] gi|224963556|emb|CAX55046.1| NADH dehydrogenase I subunit I [Erwinia pyrifoliae Ep1/96] gi|283477815|emb|CAY73731.1| NADH dehydrogenase I chain I [Erwinia pyrifoliae DSM 12163] gi|291199835|emb|CBJ46959.1| NADH dehydrogenase I chain I [Erwinia amylovora ATCC 49946] gi|291554270|emb|CBA21585.1| NADH dehydrogenase I chain I [Erwinia amylovora CFBP1430] gi|310768158|gb|ADP13108.1| NADH dehydrogenase subunit I [Erwinia sp. Ejp617] gi|312172996|emb|CBX81251.1| NADH dehydrogenase I chain I [Erwinia amylovora ATCC BAA-2158] Length = 180 Score = 127 bits (320), Expect = 4e-28, Method: Composition-based stats. Identities = 54/142 (38%), Positives = 75/142 (52%), Gaps = 8/142 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LK+ V F +R F + T+ YP E PR+RG L R P+G+ERC Sbjct: 1 MTLKDIVVGFGTTVRSIWLIGMNAFAKRETLMYPEEPVYLPPRYRGRIVLTRDPDGQERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC CP I+++ G + I+ +CI+CGLC+EACP AI P+ Sbjct: 61 VACNLCAVACPVGCISLQKAETAD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119 Query: 124 FEFATETRQELYYDKERLLNNG 145 FE RQ+L Y+KE LL +G Sbjct: 120 FELGEFKRQDLVYEKENLLISG 141 >gi|261340669|ref|ZP_05968527.1| NADH-quinone oxidoreductase subunit I [Enterobacter cancerogenus ATCC 35316] gi|296103962|ref|YP_003614108.1| NADH dehydrogenase subunit I [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|288317083|gb|EFC56021.1| NADH-quinone oxidoreductase subunit I [Enterobacter cancerogenus ATCC 35316] gi|295058421|gb|ADF63159.1| NADH dehydrogenase subunit I [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295098080|emb|CBK87170.1| NADH dehydrogenase subunit I [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 180 Score = 127 bits (319), Expect = 4e-28, Method: Composition-based stats. Identities = 54/142 (38%), Positives = 74/142 (52%), Gaps = 8/142 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LKE + F +R + F + T YP E PR+RG L R P+G ERC Sbjct: 1 MTLKELLVGFGTQVRSIWMIGLHAFAKRETRMYPEEPVYLPPRYRGRIVLTRDPDGSERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC CP I+++ G + I+ +CI+CGLC+EACP AI P+ Sbjct: 61 VACNLCAVACPVGCISLQKAETVD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119 Query: 124 FEFATETRQELYYDKERLLNNG 145 FE RQ+L Y+KE LL +G Sbjct: 120 FELGEYKRQDLVYEKEDLLISG 141 >gi|293191758|ref|ZP_06609282.1| NADH-quinone oxidoreductase subunit I [Actinomyces odontolyticus F0309] gi|292820451|gb|EFF79434.1| NADH-quinone oxidoreductase subunit I [Actinomyces odontolyticus F0309] Length = 216 Score = 127 bits (319), Expect = 4e-28, Method: Composition-based stats. Identities = 50/131 (38%), Positives = 71/131 (54%), Gaps = 5/131 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + + + + FF+ T YP E PRF G H L RY +G E+C+ C+LC CPA Sbjct: 27 MAGYGVTMASFFRPTVTEQYPREPARVMPRFHGRHQLNRYDDGLEKCVGCELCAWACPAD 86 Query: 77 AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E + G R Y I+ ++CI+CG+C EACP A+ +FE A TR Sbjct: 87 AIFVEAASNTPEEQYSAGERYGRVYQINYLRCIFCGMCIEACPTRALTMTNDFEIAKYTR 146 Query: 132 QELYYDKERLL 142 ++ Y+KE LL Sbjct: 147 EDDIYEKEDLL 157 >gi|94985024|ref|YP_604388.1| NADH-quinone oxidoreductase, chain I [Deinococcus geothermalis DSM 11300] gi|115502526|sp|Q1IZW5|NUOI_DEIGD RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|94555305|gb|ABF45219.1| NADH dehydrogenase subunit I [Deinococcus geothermalis DSM 11300] Length = 179 Score = 127 bits (319), Expect = 4e-28, Method: Composition-based stats. Identities = 54/134 (40%), Positives = 77/134 (57%), Gaps = 6/134 (4%) Query: 15 EFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPN-GEERCIACKLCEAIC 73 + + L F+ T++YP E+ + PRFRG H L R+P+ G E+CI C LC A+C Sbjct: 5 DIAKGMGVTLGKLFQKPVTVSYPEERVTLQPRFRGRHVLTRHPDTGLEKCIGCSLCAAVC 64 Query: 74 PAQAITIESGPRCH-----DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 PA AI +E+ G R Y+I+M++CI+CGLC+EACP A+V G FE A Sbjct: 65 PAYAIYVEAAENDPLNPTSPGERYAKVYEINMLRCIFCGLCEEACPTGAVVLGNEFEMAD 124 Query: 129 ETRQELYYDKERLL 142 ++ Y KE +L Sbjct: 125 YRSRDFVYGKEDML 138 >gi|326562847|gb|EGE13135.1| NADH dehydrogenase subunit I [Moraxella catarrhalis 103P14B1] gi|326577018|gb|EGE26913.1| NADH dehydrogenase subunit I [Moraxella catarrhalis 101P30B1] Length = 182 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 50/133 (37%), Positives = 74/133 (55%), Gaps = 1/133 (0%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + V + ++ + + + TI YP + PRFRG L R P+G+ERC+AC LC Sbjct: 12 MFTIVRSMWMVNSHALRPRGTILYPEQPVPVPPRFRGRIVLTRDPDGDERCVACNLCAVA 71 Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 CP I+++ R DG + I+ +C++CG+C+EACP AI P+FE RQ Sbjct: 72 CPVGCISLQKAER-EDGRWYPEFFRINFSRCVFCGMCEEACPTTAIQLTPDFELGEYDRQ 130 Query: 133 ELYYDKERLLNNG 145 L Y+KE LL +G Sbjct: 131 NLVYEKEHLLISG 143 >gi|311278762|ref|YP_003940993.1| NADH-quinone oxidoreductase, chain I [Enterobacter cloacae SCF1] gi|308747957|gb|ADO47709.1| NADH-quinone oxidoreductase, chain I [Enterobacter cloacae SCF1] Length = 180 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 54/142 (38%), Positives = 74/142 (52%), Gaps = 8/142 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LKE + F +R + F + T YP E PR+RG L R P+G ERC Sbjct: 1 MTLKEILVGFGTQVRSIWMIGLHAFAKRETQMYPEEPVYLPPRYRGRIVLTRDPDGSERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC CP I+++ G + I+ +CI+CGLC+EACP AI P+ Sbjct: 61 VACNLCAVACPVGCISLQKAEMQD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119 Query: 124 FEFATETRQELYYDKERLLNNG 145 FE RQ+L Y+KE LL +G Sbjct: 120 FELGEYKRQDLVYEKEDLLISG 141 >gi|304312247|ref|YP_003811845.1| NADH dehydrogenase I, chain I [gamma proteobacterium HdN1] gi|301797980|emb|CBL46202.1| NADH dehydrogenase I, chain I [gamma proteobacterium HdN1] Length = 175 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 53/129 (41%), Positives = 78/129 (60%), Gaps = 1/129 (0%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + + L + F K T+ YP E+ +PR+RG L R P+G+ERC+AC LC ++CP Sbjct: 9 LVSLGTVLSHTFSKKATVQYPEERPYLAPRYRGRIILSRDPDGDERCVACNLCASVCPPA 68 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 I+++ G R DG V + I+ +CI CG+C+EACP AI P+FE RQ++ Y Sbjct: 69 CISLQKGER-EDGRWYPVFFRINFSRCIMCGMCEEACPTYAIQLTPDFEMGEYVRQDMVY 127 Query: 137 DKERLLNNG 145 +KE LL +G Sbjct: 128 EKEDLLISG 136 >gi|227542301|ref|ZP_03972350.1| NADH dehydrogenase subunit I [Corynebacterium glucuronolyticum ATCC 51866] gi|227181901|gb|EEI62873.1| NADH dehydrogenase subunit I [Corynebacterium glucuronolyticum ATCC 51866] Length = 205 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 51/136 (37%), Positives = 76/136 (55%), Gaps = 5/136 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + F+ K+T+NYP + T+PRF G H L R+P+G E+C+ C+LC CPA Sbjct: 7 WRGMAVTFGAMFREKSTVNYPKKPAETNPRFHGRHQLNRWPDGLEKCVGCELCAWACPAD 66 Query: 77 AITIES-----GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E+ R G R Y+I+ ++CI+CG+C EACP A+ FE A +R Sbjct: 67 AIRVEAAANTDEERYSPGERYGKVYEINYLRCIFCGMCIEACPTRALTMTNEFELANVSR 126 Query: 132 QELYYDKERLLNNGDR 147 + L Y K++LL + Sbjct: 127 EALIYGKDKLLAPLED 142 >gi|82702149|ref|YP_411715.1| NADH dehydrogenase subunit I [Nitrosospira multiformis ATCC 25196] gi|110287762|sp|Q2YA98|NUOI1_NITMU RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName: Full=NADH dehydrogenase I subunit I 1; AltName: Full=NDH-1 subunit I 1 gi|82410214|gb|ABB74323.1| NADH dehydrogenase subunit I [Nitrosospira multiformis ATCC 25196] Length = 171 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 51/129 (39%), Positives = 73/129 (56%), Gaps = 1/129 (0%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + ++ + F+ + TI YP E + PR+RG L R P+GEERC+AC LC A CP Sbjct: 5 LKTMWIVFLHMFRRRVTIQYPDEMPNIPPRWRGRIILSRDPDGEERCVACYLCAAACPVD 64 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 I +++ R + I+ +CI+CG C+EACP DAI P+FE R+ L Y Sbjct: 65 CIALQATED-EHERRYPEFFRINFSRCIFCGFCEEACPTDAIQLTPDFEMGEYNRKNLVY 123 Query: 137 DKERLLNNG 145 +KE LL +G Sbjct: 124 EKEDLLIDG 132 >gi|197116572|ref|YP_002136999.1| NADH dehydrogenase subunit I [Geobacter bemidjiensis Bem] gi|197085932|gb|ACH37203.1| NADH dehydrogenase I, I subunit [Geobacter bemidjiensis Bem] Length = 176 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 45/133 (33%), Positives = 68/133 (51%), Gaps = 1/133 (0%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 +KE + + + ++ T+ +P E+ PRFRG L R P+G ERC+AC LC Sbjct: 7 IKEILTGLSITFSHIWRKPVTVQFPEEQRPMPPRFRGSIVLTRDPDGAERCVACYLCSGA 66 Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 CP I++ + +G R + I+ +CI CG+C EACP AI P Sbjct: 67 CPVDCISMAAAE-GENGRRYAAWFRINFSRCILCGMCAEACPTLAIQMSPEMFRCKRQVM 125 Query: 133 ELYYDKERLLNNG 145 ++ Y+KE LL +G Sbjct: 126 DMVYEKEDLLIDG 138 >gi|49081734|gb|AAT50267.1| PA2644 [synthetic construct] Length = 183 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 50/129 (38%), Positives = 72/129 (55%), Gaps = 1/129 (0%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + + + + F+ + T+ YP E PR+RG L R P+GEERC+AC LC CP Sbjct: 16 LRSLVMIFGHAFRKRDTLQYPEEPVYLPPRYRGRIVLTRDPDGEERCVACNLCAVACPVG 75 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 I+++ DG + I+ +CI+CGLC+EACP AI P+FE RQ+L Y Sbjct: 76 CISLQKAE-TEDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDFEMGEFKRQDLVY 134 Query: 137 DKERLLNNG 145 +K LL +G Sbjct: 135 EKHDLLISG 143 >gi|283786349|ref|YP_003366214.1| NADH-quinone oxidoreductase subunit I [Citrobacter rodentium ICC168] gi|282949803|emb|CBG89426.1| NADH-quinone oxidoreductase subunit I [Citrobacter rodentium ICC168] Length = 180 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 57/142 (40%), Positives = 76/142 (53%), Gaps = 8/142 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LKE + F +R + F + T YP E PRFRG L R P+GEERC Sbjct: 1 MTLKELLVGFGTQVRSIWMIGLHAFAKRETRMYPEEPVYLPPRFRGRIVLTRDPDGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC CP I+++ DG + I+ +CI+CGLC+EACP AI P+ Sbjct: 61 VACNLCAVACPVGCISLQKAE-TKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119 Query: 124 FEFATETRQELYYDKERLLNNG 145 FE RQ+L Y+KE LL +G Sbjct: 120 FELGEYKRQDLVYEKEDLLISG 141 >gi|317048932|ref|YP_004116580.1| NADH-quinone oxidoreductase subunit I [Pantoea sp. At-9b] gi|316950549|gb|ADU70024.1| NADH-quinone oxidoreductase, chain I [Pantoea sp. At-9b] Length = 180 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 54/142 (38%), Positives = 75/142 (52%), Gaps = 8/142 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LK+ V F +R + F + T YP E PR+RG L R P+GEERC Sbjct: 1 MTLKDIVVGFGTTVRSIWMIGMHAFAKRETQMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC CP I+++ G + I+ +CI+CGLC+EACP AI P+ Sbjct: 61 VACNLCAVACPVGCISLQKAEMQD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119 Query: 124 FEFATETRQELYYDKERLLNNG 145 FE RQ+L Y+K+ LL +G Sbjct: 120 FELGEFKRQDLVYEKQDLLISG 141 >gi|320449682|ref|YP_004201778.1| NADH-quinone oxidoreductase subunit I [Thermus scotoductus SA-01] gi|320149851|gb|ADW21229.1| NADH-quinone oxidoreductase, subunit I [Thermus scotoductus SA-01] Length = 182 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 59/151 (39%), Positives = 81/151 (53%), Gaps = 7/151 (4%) Query: 11 LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70 + LK + + L+Y F T+ YP + PRF G H L R+PNG E+CI C LC Sbjct: 1 MTLKALAQSLGITLKYLFSKPVTVPYPDAPVALKPRFHGRHVLTRHPNGLEKCIGCSLCA 60 Query: 71 AICPAQAITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 A CPA AI +E + G R Y+I+M++CI+CGLC+EACP AIV G +FE Sbjct: 61 AACPAYAIYVEPAENDPENPVSAGERYAKVYEINMLRCIFCGLCEEACPTGAIVLGYDFE 120 Query: 126 FATETRQELYYDKERLL--NNGDRWESEIVR 154 A +L Y KE +L G + + + Sbjct: 121 MADYEYSDLIYGKEDMLVDVVGTKPQRREAK 151 >gi|152971209|ref|YP_001336318.1| NADH dehydrogenase subunit I [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238895798|ref|YP_002920534.1| NADH dehydrogenase subunit I [Klebsiella pneumoniae NTUH-K2044] gi|262043321|ref|ZP_06016450.1| NADH-quinone oxidoreductase subunit I [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330003563|ref|ZP_08304678.1| NADH-quinone oxidoreductase subunit I [Klebsiella sp. MS 92-3] gi|150956058|gb|ABR78088.1| NADH dehydrogenase subunit I [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238548116|dbj|BAH64467.1| NADH dehydrogenase subunit I [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259039345|gb|EEW40487.1| NADH-quinone oxidoreductase subunit I [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328536903|gb|EGF63202.1| NADH-quinone oxidoreductase subunit I [Klebsiella sp. MS 92-3] Length = 180 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 54/142 (38%), Positives = 74/142 (52%), Gaps = 8/142 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LKE + F +R + F + T YP E PR+RG L R P+G ERC Sbjct: 1 MTLKELLVGFGTQVRSIWMIGLHAFAKRETRMYPEEPVYLPPRYRGRIVLTRDPDGAERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC CP I+++ G + I+ +CI+CGLC+EACP AI P+ Sbjct: 61 VACNLCAVACPVGCISLQKAETVD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119 Query: 124 FEFATETRQELYYDKERLLNNG 145 FE RQ+L Y+KE LL +G Sbjct: 120 FELGEYKRQDLVYEKEDLLISG 141 >gi|225164251|ref|ZP_03726524.1| NADH-quinone oxidoreductase, chain I [Opitutaceae bacterium TAV2] gi|224801156|gb|EEG19479.1| NADH-quinone oxidoreductase, chain I [Opitutaceae bacterium TAV2] Length = 182 Score = 127 bits (319), Expect = 6e-28, Method: Composition-based stats. Identities = 47/139 (33%), Positives = 72/139 (51%), Gaps = 5/139 (3%) Query: 12 FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71 +L + G L++ T+ YP ++ P +RG L P+G E+C++C+LCE Sbjct: 18 YLPQIAGGLKTTLKHMVAKPVTMEYPEQRPEIPPGYRGAPTLVYDPHGREKCVSCQLCEF 77 Query: 72 ICPAQAITIESGPRCH-----DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 +CP +AI I G +R + IDM++CIYCG CQE CP +AI ++ Sbjct: 78 VCPPKAIRITPGEIPSDDPNAHVEKRPQEFKIDMLRCIYCGFCQEVCPEEAIWLQNHYTV 137 Query: 127 ATETRQELYYDKERLLNNG 145 TR EL +K++L G Sbjct: 138 TGFTRDELVNNKQKLYEMG 156 >gi|156933129|ref|YP_001437045.1| NADH dehydrogenase subunit I [Cronobacter sakazakii ATCC BAA-894] gi|226737391|sp|A7MPB5|NUOI_ENTS8 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|156531383|gb|ABU76209.1| hypothetical protein ESA_00939 [Cronobacter sakazakii ATCC BAA-894] Length = 180 Score = 127 bits (318), Expect = 6e-28, Method: Composition-based stats. Identities = 54/142 (38%), Positives = 75/142 (52%), Gaps = 8/142 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LK+ V F LR + F + T YP E PR+RG L R P+G+ERC Sbjct: 1 MTLKDIVVGFGTQLRSIWMIGLHAFSKRETRMYPEEPVYLPPRYRGRIVLTRDPDGQERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC CP I+++ G + I+ +CI+CG+C+EACP AI P+ Sbjct: 61 VACNLCAVACPVGCISLQKAETVD-GRWYPEFFRINFSRCIFCGMCEEACPTTAIQLTPD 119 Query: 124 FEFATETRQELYYDKERLLNNG 145 FE RQ+L Y+KE LL +G Sbjct: 120 FELGEFKRQDLVYEKEDLLISG 141 >gi|302035984|ref|YP_003796306.1| NADH-quinone oxidoreductase subunit I [Candidatus Nitrospira defluvii] gi|300604048|emb|CBK40380.1| NADH-quinone oxidoreductase, subunit I [Candidatus Nitrospira defluvii] Length = 191 Score = 127 bits (318), Expect = 6e-28, Method: Composition-based stats. Identities = 54/160 (33%), Positives = 82/160 (51%), Gaps = 2/160 (1%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFK-AKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 F + L E + L + T+ YP EK +RG AL RY +G E+ Sbjct: 15 FGDWLKTLTFYELLVGMKATLTHLLNYKPITLQYPHEKRLLPDNYRGMLALLRYDDGTEK 74 Query: 63 CIACKLCEAICPAQAITIESGPRC-HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C+ C LCEA CP++ I + SG R + Y +DM +C++CGLC +ACPVDA+ Sbjct: 75 CVGCDLCEAACPSRVIRVVSGEVPGEPTKRYSKEYYMDMTRCLFCGLCVDACPVDALGMT 134 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161 FE+A +++L+ +K++LL GDR + + P Sbjct: 135 REFEWAVYDKRQLHLNKQQLLAIGDRSFPVREKRLELQHP 174 >gi|91200370|emb|CAJ73416.1| strongly similar to NADH dehydrogenase I chain I [Candidatus Kuenenia stuttgartiensis] Length = 171 Score = 127 bits (318), Expect = 6e-28, Method: Composition-based stats. Identities = 49/130 (37%), Positives = 72/130 (55%), Gaps = 1/130 (0%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + +L + F+ + T YP EK R+RG L R P+G ERC+ C LC A+CP Sbjct: 5 LKTIWLAFLHMFRKRVTYQYPEEKAPLPARWRGRIILSRDPDGGERCVGCYLCAAVCPVD 64 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 I++++ G R + I+ +CI+CG C++ACP AI P+FE RQ L Y Sbjct: 65 CISLQATED-EYGRRYPEFFRINFSRCIFCGFCEDACPTYAIQLVPDFEMCEYNRQNLVY 123 Query: 137 DKERLLNNGD 146 +KE LL +G+ Sbjct: 124 EKEDLLISGE 133 >gi|167549680|ref|ZP_02343439.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|198242928|ref|YP_002216391.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|197937444|gb|ACH74777.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205325199|gb|EDZ13038.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|326624142|gb|EGE30487.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 180 Score = 127 bits (318), Expect = 6e-28, Method: Composition-based stats. Identities = 56/142 (39%), Positives = 76/142 (53%), Gaps = 8/142 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LKE + F +R + F + T YP E PR+RG L R P+GEERC Sbjct: 1 MTLKELLVGFGTQVRSIWMIGLHAFAKRETRMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC CP I+++ DG + I+ +CI+CGLC+EACP AI P+ Sbjct: 61 VACNLCAVACPVGCISLQKAE-TKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119 Query: 124 FEFATETRQELYYDKERLLNNG 145 FE RQ+L Y+KE LL +G Sbjct: 120 FELGEYKRQDLVYEKEDLLISG 141 >gi|269926641|ref|YP_003323264.1| NADH-quinone oxidoreductase, chain I [Thermobaculum terrenum ATCC BAA-798] gi|269790301|gb|ACZ42442.1| NADH-quinone oxidoreductase, chain I [Thermobaculum terrenum ATCC BAA-798] Length = 170 Score = 127 bits (318), Expect = 6e-28, Method: Composition-based stats. Identities = 56/137 (40%), Positives = 73/137 (53%), Gaps = 2/137 (1%) Query: 11 LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPN-GEERCIACKLC 69 + L + F++ L + T YP E + RFRG L P GEE+C AC LC Sbjct: 1 MALLDRFKGFYVVLSQMLQPPVTRQYPKEPRKMTHRFRGIPVLVTDPETGEEKCTACGLC 60 Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 CP IT+ S P G R V Y+I ++C++CGLC EACPV AI +FE A+ Sbjct: 61 ATACPNNVITMTSEPHATKG-RHPVTYNIQALRCLFCGLCVEACPVKAIQMSHHFELAST 119 Query: 130 TRQELYYDKERLLNNGD 146 +R L YDK+RLL G Sbjct: 120 SRDNLLYDKQRLLELGR 136 >gi|15597840|ref|NP_251334.1| NADH dehydrogenase subunit I [Pseudomonas aeruginosa PAO1] gi|107102164|ref|ZP_01366082.1| hypothetical protein PaerPA_01003214 [Pseudomonas aeruginosa PACS2] gi|116050631|ref|YP_790550.1| NADH dehydrogenase subunit I [Pseudomonas aeruginosa UCBPP-PA14] gi|152984090|ref|YP_001347926.1| NADH dehydrogenase subunit I [Pseudomonas aeruginosa PA7] gi|218891195|ref|YP_002440061.1| NADH dehydrogenase subunit I [Pseudomonas aeruginosa LESB58] gi|254235626|ref|ZP_04928949.1| NADH Dehydrogenase I chain I [Pseudomonas aeruginosa C3719] gi|254241074|ref|ZP_04934396.1| NADH Dehydrogenase I chain I [Pseudomonas aeruginosa 2192] gi|296388895|ref|ZP_06878370.1| NADH dehydrogenase subunit I [Pseudomonas aeruginosa PAb1] gi|313107683|ref|ZP_07793865.1| NADH Dehydrogenase I chain I [Pseudomonas aeruginosa 39016] gi|81783693|sp|Q9I0J4|NUOI_PSEAE RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|122259754|sp|Q02ND6|NUOI_PSEAB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|166918795|sp|A6V4E1|NUOI_PSEA7 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|226737408|sp|B7VAQ8|NUOI_PSEA8 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|9948713|gb|AAG06032.1|AE004693_3 NADH Dehydrogenase I chain I [Pseudomonas aeruginosa PAO1] gi|115585852|gb|ABJ11867.1| NADH Dehydrogenase I chain I [Pseudomonas aeruginosa UCBPP-PA14] gi|126167557|gb|EAZ53068.1| NADH Dehydrogenase I chain I [Pseudomonas aeruginosa C3719] gi|126194452|gb|EAZ58515.1| NADH Dehydrogenase I chain I [Pseudomonas aeruginosa 2192] gi|150959248|gb|ABR81273.1| NADH Dehydrogenase I chain I [Pseudomonas aeruginosa PA7] gi|218771420|emb|CAW27187.1| NADH Dehydrogenase I chain I [Pseudomonas aeruginosa LESB58] gi|310880367|gb|EFQ38961.1| NADH Dehydrogenase I chain I [Pseudomonas aeruginosa 39016] Length = 182 Score = 127 bits (318), Expect = 6e-28, Method: Composition-based stats. Identities = 50/129 (38%), Positives = 72/129 (55%), Gaps = 1/129 (0%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + + + + F+ + T+ YP E PR+RG L R P+GEERC+AC LC CP Sbjct: 16 LRSLVMIFGHAFRKRDTLQYPEEPVYLPPRYRGRIVLTRDPDGEERCVACNLCAVACPVG 75 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 I+++ DG + I+ +CI+CGLC+EACP AI P+FE RQ+L Y Sbjct: 76 CISLQKAE-TEDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDFEMGEFKRQDLVY 134 Query: 137 DKERLLNNG 145 +K LL +G Sbjct: 135 EKHDLLISG 143 >gi|237732312|ref|ZP_04562793.1| NADH dehydrogenase subunit I [Citrobacter sp. 30_2] gi|283832289|ref|ZP_06352030.1| NADH-quinone oxidoreductase subunit I [Citrobacter youngae ATCC 29220] gi|226907851|gb|EEH93769.1| NADH dehydrogenase subunit I [Citrobacter sp. 30_2] gi|291071934|gb|EFE10043.1| NADH-quinone oxidoreductase subunit I [Citrobacter youngae ATCC 29220] Length = 180 Score = 127 bits (318), Expect = 7e-28, Method: Composition-based stats. Identities = 57/142 (40%), Positives = 75/142 (52%), Gaps = 8/142 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LKE F +R + F + T YP E PRFRG L R P+GEERC Sbjct: 1 MTLKELFVGFGTQVRSIWMIGLHAFAKRETQMYPEEPVYLPPRFRGRIVLTRDPDGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC CP I+++ DG + I+ +CI+CGLC+EACP AI P+ Sbjct: 61 VACNLCAVACPVGCISLQKAE-TKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119 Query: 124 FEFATETRQELYYDKERLLNNG 145 FE RQ+L Y+KE LL +G Sbjct: 120 FELGEYKRQDLVYEKEDLLISG 141 >gi|320532478|ref|ZP_08033301.1| NADH-quinone oxidoreductase, chain I [Actinomyces sp. oral taxon 171 str. F0337] gi|320135308|gb|EFW27433.1| NADH-quinone oxidoreductase, chain I [Actinomyces sp. oral taxon 171 str. F0337] Length = 235 Score = 127 bits (318), Expect = 7e-28, Method: Composition-based stats. Identities = 51/133 (38%), Positives = 69/133 (51%), Gaps = 6/133 (4%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V + + + F+ T YPFE PR+ G H L RY +G E+CI C+LC CPA Sbjct: 31 VAGYGVTISSMFRPVVTEQYPFEAPQVMPRYHGRHQLNRYDDGLEKCIGCELCAWACPAD 90 Query: 77 AIT-----IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF-EFATET 130 AI E G + G R Y I+ ++CI+CG+C EACP A+ +F E Sbjct: 91 AIYVEAASNEPGAQYSPGERYGRVYQINYLRCIFCGMCIEACPTRALTMSTDFDELVGPG 150 Query: 131 RQELYYDKERLLN 143 R+ L Y+KE LL Sbjct: 151 REGLIYEKEDLLA 163 >gi|238751241|ref|ZP_04612735.1| NADH-quinone oxidoreductase subunit I [Yersinia rohdei ATCC 43380] gi|238710515|gb|EEQ02739.1| NADH-quinone oxidoreductase subunit I [Yersinia rohdei ATCC 43380] Length = 180 Score = 127 bits (318), Expect = 7e-28, Method: Composition-based stats. Identities = 51/129 (39%), Positives = 72/129 (55%), Gaps = 1/129 (0%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V + ++ + F + T+ YP E PR+RG L R P+GEERC+AC LC CP Sbjct: 14 VRSLWMIGSHAFHKRETLMYPEEPVYLPPRYRGRIVLTRDPDGEERCVACNLCAVACPVG 73 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 I+++ G + I+ +CI+CGLC+EACP AI P+FE RQ+L Y Sbjct: 74 CISLQKAEHKD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDFEMGEFKRQDLVY 132 Query: 137 DKERLLNNG 145 +KE LL +G Sbjct: 133 EKEDLLISG 141 >gi|262373368|ref|ZP_06066647.1| NADH-plastoquinone oxidoreductase, I subunit [Acinetobacter junii SH205] gi|262313393|gb|EEY94478.1| NADH-plastoquinone oxidoreductase, I subunit [Acinetobacter junii SH205] Length = 180 Score = 127 bits (318), Expect = 7e-28, Method: Composition-based stats. Identities = 52/135 (38%), Positives = 74/135 (54%), Gaps = 3/135 (2%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGS--TSPRFRGEHALRRYPNGEERCIACKLCE 70 V + ++ + + + TI YP PRFRG L R P+GEERC+AC LC Sbjct: 8 FGSIVRSLWMVFSHATRKRDTILYPEVPAEQIVPPRFRGRIILTRDPDGEERCVACNLCA 67 Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 CP I+++ + DG + I+ +CI+CG+C+EACP AI P+FE A Sbjct: 68 VACPVGCISLQKAEK-EDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQMTPDFELAEYV 126 Query: 131 RQELYYDKERLLNNG 145 RQ+L Y+KE LL +G Sbjct: 127 RQDLVYEKENLLISG 141 >gi|226953545|ref|ZP_03824009.1| NADH dehydrogenase subunit I [Acinetobacter sp. ATCC 27244] gi|294649467|ref|ZP_06726891.1| NADH-quinone oxidoreductase subunit I [Acinetobacter haemolyticus ATCC 19194] gi|226835723|gb|EEH68106.1| NADH dehydrogenase subunit I [Acinetobacter sp. ATCC 27244] gi|292824637|gb|EFF83416.1| NADH-quinone oxidoreductase subunit I [Acinetobacter haemolyticus ATCC 19194] Length = 180 Score = 127 bits (318), Expect = 7e-28, Method: Composition-based stats. Identities = 52/135 (38%), Positives = 74/135 (54%), Gaps = 3/135 (2%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGS--TSPRFRGEHALRRYPNGEERCIACKLCE 70 V + ++ + + + TI YP PRFRG L R P+GEERC+AC LC Sbjct: 8 FGSIVRSLWMVFSHVTRKRDTILYPEVPAEQIVPPRFRGRIILTRDPDGEERCVACNLCA 67 Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 CP I+++ + DG + I+ +CI+CG+C+EACP AI P+FE A Sbjct: 68 VACPVGCISLQKAEK-EDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQMTPDFELAEYV 126 Query: 131 RQELYYDKERLLNNG 145 RQ+L Y+KE LL +G Sbjct: 127 RQDLVYEKENLLISG 141 >gi|206576263|ref|YP_002237331.1| NADH-quinone oxidoreductase, I subunit [Klebsiella pneumoniae 342] gi|288934261|ref|YP_003438320.1| NADH-quinone oxidoreductase, chain I [Klebsiella variicola At-22] gi|290508464|ref|ZP_06547835.1| NADH-quinone oxidoreductase subunit I [Klebsiella sp. 1_1_55] gi|206565321|gb|ACI07097.1| NADH-quinone oxidoreductase, I subunit [Klebsiella pneumoniae 342] gi|288888990|gb|ADC57308.1| NADH-quinone oxidoreductase, chain I [Klebsiella variicola At-22] gi|289777858|gb|EFD85855.1| NADH-quinone oxidoreductase subunit I [Klebsiella sp. 1_1_55] Length = 180 Score = 127 bits (318), Expect = 7e-28, Method: Composition-based stats. Identities = 55/142 (38%), Positives = 75/142 (52%), Gaps = 8/142 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LKE + F +R + F + T YP E PR+RG L R P+G ERC Sbjct: 1 MTLKELLVGFGTQVRSIWMIGLHAFAKRETRMYPEEPVYLPPRYRGRIVLTRDPDGAERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC CP I+++ DG + I+ +CI+CGLC+EACP AI P+ Sbjct: 61 VACNLCAVACPVGCISLQKAE-TKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119 Query: 124 FEFATETRQELYYDKERLLNNG 145 FE RQ+L Y+KE LL +G Sbjct: 120 FELGEYKRQDLVYEKEDLLISG 141 >gi|300717644|ref|YP_003742447.1| NADH dehydrogenase I chain I [Erwinia billingiae Eb661] gi|299063480|emb|CAX60600.1| NADH dehydrogenase I chain I [Erwinia billingiae Eb661] Length = 180 Score = 126 bits (317), Expect = 8e-28, Method: Composition-based stats. Identities = 54/142 (38%), Positives = 75/142 (52%), Gaps = 8/142 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LK+ V F +R F + T+ YP E PR+RG L R P+G+ERC Sbjct: 1 MTLKDLVVGFGTTVRSIFLIGMNAFAKRETMMYPEEPVYLPPRYRGRIVLTRDPDGQERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC CP I+++ G + I+ +CI+CGLC+EACP AI P+ Sbjct: 61 VACNLCAVACPVGCISLQKAETQD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119 Query: 124 FEFATETRQELYYDKERLLNNG 145 FE RQ+L Y+KE LL +G Sbjct: 120 FELGEFKRQDLVYEKENLLISG 141 >gi|312967579|ref|ZP_07781794.1| NADH-quinone oxidoreductase, chain I family protein [Escherichia coli 2362-75] gi|312287776|gb|EFR15681.1| NADH-quinone oxidoreductase, chain I family protein [Escherichia coli 2362-75] Length = 180 Score = 126 bits (317), Expect = 8e-28, Method: Composition-based stats. Identities = 57/142 (40%), Positives = 77/142 (54%), Gaps = 8/142 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LKE + F +R + F + T YP E PR+RG L RYP+GEERC Sbjct: 1 MTLKELLVGFGTQVRSIWMIGLHAFAKRETRMYPEEPVYLPPRYRGRIVLTRYPDGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC CP I+++ DG + I+ +CI+CGLC+EACP AI P+ Sbjct: 61 VACNLCAVACPVGCISLQKAE-TKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119 Query: 124 FEFATETRQELYYDKERLLNNG 145 FE RQ+L Y+KE LL +G Sbjct: 120 FEMGEYKRQDLVYEKEDLLISG 141 >gi|16761246|ref|NP_456863.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16765648|ref|NP_461263.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29141058|ref|NP_804400.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56412782|ref|YP_149857.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62180891|ref|YP_217308.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161612951|ref|YP_001586916.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167994669|ref|ZP_02575760.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168229690|ref|ZP_02654748.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168237338|ref|ZP_02662396.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168242439|ref|ZP_02667371.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168261663|ref|ZP_02683636.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168465976|ref|ZP_02699846.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168817949|ref|ZP_02829949.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194446441|ref|YP_002041581.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194451795|ref|YP_002046374.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194469216|ref|ZP_03075200.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194738262|ref|YP_002115390.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249761|ref|YP_002147279.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197263656|ref|ZP_03163730.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197361716|ref|YP_002141352.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|200386777|ref|ZP_03213389.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204929042|ref|ZP_03220185.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205353436|ref|YP_002227237.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857739|ref|YP_002244390.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213028651|ref|ZP_03343098.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213052937|ref|ZP_03345815.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213419033|ref|ZP_03352099.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213427017|ref|ZP_03359767.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213580776|ref|ZP_03362602.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213612295|ref|ZP_03370121.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|224583193|ref|YP_002636991.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912400|ref|ZP_04656237.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|75505657|sp|Q57M35|NUOI_SALCH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|81678159|sp|Q5PN58|NUOI_SALPA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|81706883|sp|Q7CQ51|NUOI_SALTY RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|81766252|sp|Q8XFD5|NUOI_SALTI RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|25282717|pir||AG0796 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16420862|gb|AAL21222.1| NADH dehydrogenase I chain I [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16503545|emb|CAD07553.1| NADH dehydrogenase I chain I [Salmonella enterica subsp. enterica serovar Typhi] gi|29136684|gb|AAO68249.1| NADH dehydrogenase I chain I [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56127039|gb|AAV76545.1| NADH dehydrogenase I chain I [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62128524|gb|AAX66227.1| NADH dehydrogenase I chain I [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161362315|gb|ABX66083.1| hypothetical protein SPAB_00657 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194405104|gb|ACF65326.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194410099|gb|ACF70318.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194455580|gb|EDX44419.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194713764|gb|ACF92985.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195631186|gb|EDX49746.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197093192|emb|CAR58636.1| NADH dehydrogenase I chain I [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197213464|gb|ACH50861.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197241911|gb|EDY24531.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197289600|gb|EDY28963.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|199603875|gb|EDZ02420.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321586|gb|EDZ06785.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205273217|emb|CAR38180.1| NADH dehydrogenase I chain I [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205327493|gb|EDZ14257.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205335833|gb|EDZ22597.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205338317|gb|EDZ25081.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205345035|gb|EDZ31799.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205349680|gb|EDZ36311.1| NADH-quinone oxidoreductase, I subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709542|emb|CAR33887.1| NADH dehydrogenase I chain I [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224467720|gb|ACN45550.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261247527|emb|CBG25354.1| NADH dehydrogenase I chain I [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994416|gb|ACY89301.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158879|emb|CBW18392.1| NADH dehydrogenase I chain I [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913312|dbj|BAJ37286.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320086755|emb|CBY96527.1| NADH dehydrogenase I chain I [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321222977|gb|EFX48048.1| NADH-ubiquinone oxidoreductase chain I [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322617067|gb|EFY13973.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617627|gb|EFY14526.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624743|gb|EFY21572.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630292|gb|EFY27062.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634473|gb|EFY31206.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322639183|gb|EFY35875.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640046|gb|EFY36713.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645733|gb|EFY42257.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651508|gb|EFY47883.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656068|gb|EFY52367.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659421|gb|EFY55668.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665881|gb|EFY62064.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669879|gb|EFY66020.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673865|gb|EFY69962.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322678623|gb|EFY74679.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683581|gb|EFY79595.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687657|gb|EFY83627.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322715370|gb|EFZ06941.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323193509|gb|EFZ78714.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198414|gb|EFZ83516.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201928|gb|EFZ86990.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208534|gb|EFZ93473.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323209757|gb|EFZ94681.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218293|gb|EGA03003.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323222949|gb|EGA07298.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227385|gb|EGA11550.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232288|gb|EGA16391.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235678|gb|EGA19762.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323241161|gb|EGA25197.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323244903|gb|EGA28905.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323250022|gb|EGA33916.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251634|gb|EGA35502.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323254945|gb|EGA38736.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323260325|gb|EGA43944.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323268099|gb|EGA51576.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270808|gb|EGA54246.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|332989254|gb|AEF08237.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 180 Score = 126 bits (317), Expect = 8e-28, Method: Composition-based stats. Identities = 56/142 (39%), Positives = 76/142 (53%), Gaps = 8/142 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LKE + F +R + F + T YP E PR+RG L R P+GEERC Sbjct: 1 MTLKELLVGFGTQVRSIWMIGLHAFAKRETRMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC CP I+++ DG + I+ +CI+CGLC+EACP AI P+ Sbjct: 61 VACNLCAVACPVGCISLQKAE-TKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119 Query: 124 FEFATETRQELYYDKERLLNNG 145 FE RQ+L Y+KE LL +G Sbjct: 120 FELGEYKRQDLVYEKEDLLISG 141 >gi|39998523|ref|NP_954474.1| NADH dehydrogenase subunit I [Geobacter sulfurreducens PCA] gi|81700840|sp|Q746T4|NUOI2_GEOSL RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName: Full=NADH dehydrogenase I subunit I 2; AltName: Full=NDH-1 subunit I 2 gi|39985470|gb|AAR36824.1| NADH dehydrogenase I, I subunit [Geobacter sulfurreducens PCA] gi|298507467|gb|ADI86190.1| NADH dehydrogenase I, I subunit [Geobacter sulfurreducens KN400] Length = 176 Score = 126 bits (317), Expect = 8e-28, Method: Composition-based stats. Identities = 51/133 (38%), Positives = 73/133 (54%), Gaps = 1/133 (0%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 K F+ ++ F+ T+ YP K + +PR+R L R P+G ERC+AC LC A Sbjct: 7 FKAIATGLFVTWKHIFRRPVTVEYPEVKRTPAPRYRARIVLTRDPDGGERCVACYLCSAA 66 Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 CP I++E+ +G R + I+ +CI+CGLC EACP AI P++E Sbjct: 67 CPVDCISMEAAE-GEEGRRYARWFRINFSRCIFCGLCAEACPTLAIQMTPDYEICERDIM 125 Query: 133 ELYYDKERLLNNG 145 EL Y+KE LL +G Sbjct: 126 ELVYEKEDLLIDG 138 >gi|148262406|ref|YP_001229112.1| NADH dehydrogenase subunit I [Geobacter uraniireducens Rf4] gi|146395906|gb|ABQ24539.1| NADH dehydrogenase subunit I [Geobacter uraniireducens Rf4] Length = 176 Score = 126 bits (317), Expect = 8e-28, Method: Composition-based stats. Identities = 52/133 (39%), Positives = 72/133 (54%), Gaps = 1/133 (0%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 +K + ++ F+ TI YP EK PR+R L R P G ERC+AC LC A Sbjct: 7 IKALCIGLWTTWKHIFRRPATIQYPEEKRIPYPRYRARIVLTRDPEGGERCVACYLCSAA 66 Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 CP I++++ R +G R + I+ +CI+CGLC EACP AI P++E Sbjct: 67 CPVDCISMQAAER-ENGRRYAAWFRINFSRCIFCGLCAEACPTMAIQMTPDYEICKRDIM 125 Query: 133 ELYYDKERLLNNG 145 EL Y+KE LL +G Sbjct: 126 ELVYEKEDLLIDG 138 >gi|238788647|ref|ZP_04632439.1| NADH-quinone oxidoreductase subunit I [Yersinia frederiksenii ATCC 33641] gi|238723242|gb|EEQ14890.1| NADH-quinone oxidoreductase subunit I [Yersinia frederiksenii ATCC 33641] Length = 180 Score = 126 bits (317), Expect = 8e-28, Method: Composition-based stats. Identities = 51/129 (39%), Positives = 71/129 (55%), Gaps = 1/129 (0%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V + ++ + F + T YP E PR+RG L R P+GEERC+AC LC CP Sbjct: 14 VRSLWMIGSHAFHKRETQMYPEEPVYLPPRYRGRIVLTRDPDGEERCVACNLCAVACPVG 73 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 I+++ G + I+ +CI+CGLC+EACP AI P+FE RQ+L Y Sbjct: 74 CISLQKAEHKD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDFEMGEFKRQDLVY 132 Query: 137 DKERLLNNG 145 +KE LL +G Sbjct: 133 EKEDLLISG 141 >gi|227535963|ref|ZP_03966012.1| NADH dehydrogenase (quinone) [Sphingobacterium spiritivorum ATCC 33300] gi|300771669|ref|ZP_07081544.1| NADH-quinone oxidoreductase subunit I [Sphingobacterium spiritivorum ATCC 33861] gi|227244206|gb|EEI94221.1| NADH dehydrogenase (quinone) [Sphingobacterium spiritivorum ATCC 33300] gi|300761658|gb|EFK58479.1| NADH-quinone oxidoreductase subunit I [Sphingobacterium spiritivorum ATCC 33861] Length = 174 Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats. Identities = 53/149 (35%), Positives = 80/149 (53%), Gaps = 10/149 (6%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M I+ ++L + LR+FFK T+ YP + S FRG+H+L+R G Sbjct: 16 MNIWER----MYLPAIAKGLAITLRHFFKKIPTVKYPEQIRPYSKNFRGQHSLKRDEQGR 71 Query: 61 ERCIACKLCEAICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQEACP 114 ERC AC LC CPA+AIT+ + R + Y+I+M++CI+CGLC+EACP Sbjct: 72 ERCTACGLCALSCPAEAITMTAAERQKGEENLYREEKYAAVYEINMLRCIFCGLCEEACP 131 Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLN 143 +AI A+ R++ Y K++L+ Sbjct: 132 KEAIYLDGPHVTASYLRKDFIYGKDKLVE 160 >gi|256425960|ref|YP_003126613.1| NADH-quinone oxidoreductase, chain I [Chitinophaga pinensis DSM 2588] gi|256040868|gb|ACU64412.1| NADH-quinone oxidoreductase, chain I [Chitinophaga pinensis DSM 2588] Length = 169 Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats. Identities = 53/143 (37%), Positives = 75/143 (52%), Gaps = 6/143 (4%) Query: 7 NVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIAC 66 + ++L + + ++ +K K T+ YP +K SP FRG H L R G E C AC Sbjct: 18 FIESIYLWNIIKGMIITFKHIWKRKETVKYPEQKREFSPVFRGLHILNRDAEGRENCTAC 77 Query: 67 KLCEAICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 LC CPA+AIT+E+ R + RY+I+M++CI+CG C+EACP DAI Sbjct: 78 GLCAVACPAEAITMEAAERKAGEEHLYREEKYAARYEINMLRCIFCGFCEEACPKDAIYL 137 Query: 121 GPNFEFATETRQELYYDKERLLN 143 F A R+ Y K+ LL Sbjct: 138 TETFAPANYKREGFIYGKQDLLI 160 >gi|145298716|ref|YP_001141557.1| NADH dehydrogenase subunit I [Aeromonas salmonicida subsp. salmonicida A449] gi|156632701|sp|A4SLN7|NUOI_AERS4 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|142851488|gb|ABO89809.1| NADH dehydrogenase I, I subunit [Aeromonas salmonicida subsp. salmonicida A449] Length = 180 Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats. Identities = 49/129 (37%), Positives = 75/129 (58%), Gaps = 1/129 (0%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + + + + ++ + T++YP E + PR+RG L R P+G+ERC+AC LC CP Sbjct: 14 LRSLGMVFSHAWRPRETLSYPDESIYSPPRYRGRIVLTRDPDGDERCVACNLCAVACPVG 73 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 I+++ R G + I+ +CI+CGLC+EACP AI P+FE RQ+L Y Sbjct: 74 CISLQKAERDD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDFEMGEYRRQDLVY 132 Query: 137 DKERLLNNG 145 +KE LL +G Sbjct: 133 EKEDLLISG 141 >gi|213645876|ref|ZP_03375929.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 180 Score = 126 bits (317), Expect = 9e-28, Method: Composition-based stats. Identities = 56/142 (39%), Positives = 76/142 (53%), Gaps = 8/142 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LKE + F +R + F + T YP E PR+RG L R P+GEERC Sbjct: 1 MTLKELLVGFGTQVRSIWMIGLHAFAKRETRMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC CP I+++ DG + I+ +CI+CGLC+EACP AI P+ Sbjct: 61 VACNLCAVACPVGCISLQKAE-TKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119 Query: 124 FEFATETRQELYYDKERLLNNG 145 FE RQ+L Y+KE LL +G Sbjct: 120 FELGEYKRQDLVYEKEDLLISG 141 >gi|126666311|ref|ZP_01737290.1| NADH dehydrogenase subunit I [Marinobacter sp. ELB17] gi|126629112|gb|EAZ99730.1| NADH dehydrogenase subunit I [Marinobacter sp. ELB17] Length = 179 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 56/129 (43%), Positives = 77/129 (59%), Gaps = 1/129 (0%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + + + F+ + T+NYP E+ SPR+RG L R P+GEERC+AC LC CP Sbjct: 13 LRTLGMVFMHGFRKRETVNYPEEEVYLSPRYRGRIVLTRDPDGEERCVACNLCAVACPVA 72 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 I++E G R DG + I+ +CI+CG+C+EACP AI P+FE RQEL Y Sbjct: 73 CISLEKGER-EDGRWYPEFFRINFSRCIFCGMCEEACPTSAIQLTPDFEMGEYNRQELVY 131 Query: 137 DKERLLNNG 145 +KE LL +G Sbjct: 132 EKEDLLISG 140 >gi|15802828|ref|NP_288855.1| NADH dehydrogenase subunit I [Escherichia coli O157:H7 EDL933] gi|15832419|ref|NP_311192.1| NADH dehydrogenase subunit I [Escherichia coli O157:H7 str. Sakai] gi|16130216|ref|NP_416784.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli str. K-12 substr. MG1655] gi|24113653|ref|NP_708163.1| NADH dehydrogenase subunit I [Shigella flexneri 2a str. 301] gi|26248668|ref|NP_754708.1| NADH dehydrogenase subunit I [Escherichia coli CFT073] gi|30063707|ref|NP_837878.1| NADH dehydrogenase subunit I [Shigella flexneri 2a str. 2457T] gi|82544759|ref|YP_408706.1| NADH dehydrogenase subunit I [Shigella boydii Sb227] gi|89109099|ref|AP_002879.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli str. K-12 substr. W3110] gi|91211573|ref|YP_541559.1| NADH dehydrogenase subunit I [Escherichia coli UTI89] gi|110642485|ref|YP_670215.1| NADH dehydrogenase subunit I [Escherichia coli 536] gi|110806244|ref|YP_689764.1| NADH dehydrogenase subunit I [Shigella flexneri 5 str. 8401] gi|117624470|ref|YP_853383.1| NADH dehydrogenase subunit I [Escherichia coli APEC O1] gi|157157555|ref|YP_001463624.1| NADH dehydrogenase subunit I [Escherichia coli E24377A] gi|157161769|ref|YP_001459087.1| NADH dehydrogenase subunit I [Escherichia coli HS] gi|168748130|ref|ZP_02773152.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7 str. EC4113] gi|168755033|ref|ZP_02780040.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7 str. EC4401] gi|168761280|ref|ZP_02786287.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7 str. EC4501] gi|168767907|ref|ZP_02792914.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7 str. EC4486] gi|168772993|ref|ZP_02798000.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7 str. EC4196] gi|168780136|ref|ZP_02805143.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7 str. EC4076] gi|168787188|ref|ZP_02812195.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7 str. EC869] gi|168798451|ref|ZP_02823458.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7 str. EC508] gi|170019410|ref|YP_001724364.1| NADH dehydrogenase subunit I [Escherichia coli ATCC 8739] gi|170081898|ref|YP_001731218.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli str. K-12 substr. DH10B] gi|170681076|ref|YP_001744479.1| NADH dehydrogenase subunit I [Escherichia coli SMS-3-5] gi|170767587|ref|ZP_02902040.1| NADH-quinone oxidoreductase, I subunit [Escherichia albertii TW07627] gi|187731669|ref|YP_001881102.1| NADH dehydrogenase subunit I [Shigella boydii CDC 3083-94] gi|188493684|ref|ZP_03000954.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli 53638] gi|191166474|ref|ZP_03028304.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli B7A] gi|191170159|ref|ZP_03031713.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli F11] gi|193062235|ref|ZP_03043330.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli E22] gi|193068159|ref|ZP_03049123.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli E110019] gi|194427176|ref|ZP_03059727.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli B171] gi|194433333|ref|ZP_03065613.1| NADH-quinone oxidoreductase, I subunit [Shigella dysenteriae 1012] gi|194436354|ref|ZP_03068456.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli 101-1] gi|195935658|ref|ZP_03081040.1| NADH dehydrogenase subunit I [Escherichia coli O157:H7 str. EC4024] gi|208805658|ref|ZP_03247995.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7 str. EC4206] gi|208814081|ref|ZP_03255410.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7 str. EC4045] gi|208818598|ref|ZP_03258918.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7 str. EC4042] gi|209399174|ref|YP_002271690.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7 str. EC4115] gi|209919729|ref|YP_002293813.1| NADH dehydrogenase subunit I [Escherichia coli SE11] gi|215487494|ref|YP_002329925.1| NADH dehydrogenase subunit I [Escherichia coli O127:H6 str. E2348/69] gi|217326746|ref|ZP_03442829.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7 str. TW14588] gi|218548270|ref|YP_002382061.1| NADH dehydrogenase subunit I [Escherichia fergusonii ATCC 35469] gi|218554837|ref|YP_002387750.1| NADH dehydrogenase subunit I [Escherichia coli IAI1] gi|218559194|ref|YP_002392107.1| NADH dehydrogenase subunit I [Escherichia coli S88] gi|218690441|ref|YP_002398653.1| NADH dehydrogenase subunit I [Escherichia coli ED1a] gi|218695880|ref|YP_002403547.1| NADH dehydrogenase subunit I [Escherichia coli 55989] gi|218700755|ref|YP_002408384.1| NADH dehydrogenase subunit I [Escherichia coli IAI39] gi|218705811|ref|YP_002413330.1| NADH dehydrogenase subunit I [Escherichia coli UMN026] gi|227887337|ref|ZP_04005142.1| NADH dehydrogenase subunit I [Escherichia coli 83972] gi|237704755|ref|ZP_04535236.1| NADH:ubiquinone oxidoreductase [Escherichia sp. 3_2_53FAA] gi|238901456|ref|YP_002927252.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli BW2952] gi|253772797|ref|YP_003035628.1| NADH dehydrogenase subunit I [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162290|ref|YP_003045398.1| NADH dehydrogenase subunit I [Escherichia coli B str. REL606] gi|254794173|ref|YP_003079010.1| NADH dehydrogenase subunit I [Escherichia coli O157:H7 str. TW14359] gi|256017563|ref|ZP_05431428.1| NADH dehydrogenase subunit I [Shigella sp. D9] gi|256022035|ref|ZP_05435900.1| NADH dehydrogenase subunit I [Escherichia sp. 4_1_40B] gi|260844868|ref|YP_003222646.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli O103:H2 str. 12009] gi|260856325|ref|YP_003230216.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli O26:H11 str. 11368] gi|260869004|ref|YP_003235406.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli O111:H- str. 11128] gi|261223265|ref|ZP_05937546.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli O157:H7 str. FRIK2000] gi|261259185|ref|ZP_05951718.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli O157:H7 str. FRIK966] gi|291283522|ref|YP_003500340.1| NADH-quinone oxidoreductase subunit I [Escherichia coli O55:H7 str. CB9615] gi|293405747|ref|ZP_06649739.1| NADH-quinone oxidoreductase [Escherichia coli FVEC1412] gi|293410641|ref|ZP_06654217.1| conserved hypothetical protein [Escherichia coli B354] gi|293415574|ref|ZP_06658217.1| NADH dehydrogenase I subunit I [Escherichia coli B185] gi|293446618|ref|ZP_06663040.1| NADH dehydrogenase I subunit I [Escherichia coli B088] gi|297518346|ref|ZP_06936732.1| NADH dehydrogenase subunit I [Escherichia coli OP50] gi|298381430|ref|ZP_06991029.1| NADH-quinone oxidoreductase subunit I [Escherichia coli FVEC1302] gi|300818119|ref|ZP_07098331.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 107-1] gi|300822152|ref|ZP_07102294.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 119-7] gi|300896955|ref|ZP_07115436.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 198-1] gi|300903666|ref|ZP_07121582.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 84-1] gi|300918554|ref|ZP_07135144.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 115-1] gi|300924540|ref|ZP_07140504.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 182-1] gi|300931366|ref|ZP_07146697.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 187-1] gi|300936845|ref|ZP_07151734.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 21-1] gi|300948575|ref|ZP_07162668.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 116-1] gi|300956459|ref|ZP_07168748.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 175-1] gi|300981077|ref|ZP_07175349.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 200-1] gi|300983376|ref|ZP_07176560.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 45-1] gi|301024079|ref|ZP_07187793.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 69-1] gi|301026951|ref|ZP_07190344.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 196-1] gi|301049034|ref|ZP_07196019.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 185-1] gi|301303260|ref|ZP_07209385.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 124-1] gi|301328773|ref|ZP_07221821.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 78-1] gi|301647622|ref|ZP_07247418.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 146-1] gi|306814608|ref|ZP_07448770.1| NADH dehydrogenase subunit I [Escherichia coli NC101] gi|307138945|ref|ZP_07498301.1| NADH dehydrogenase subunit I [Escherichia coli H736] gi|307311159|ref|ZP_07590803.1| NADH-quinone oxidoreductase, chain I [Escherichia coli W] gi|309793160|ref|ZP_07687588.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 145-7] gi|312973460|ref|ZP_07787632.1| NADH-quinone oxidoreductase, chain I family protein [Escherichia coli 1827-70] gi|331642919|ref|ZP_08344054.1| NADH-quinone oxidoreductase subunit I [Escherichia coli H736] gi|331647936|ref|ZP_08349028.1| NADH-quinone oxidoreductase subunit I [Escherichia coli M605] gi|331653723|ref|ZP_08354724.1| NADH-quinone oxidoreductase subunit I [Escherichia coli M718] gi|331663795|ref|ZP_08364705.1| NADH-quinone oxidoreductase subunit I [Escherichia coli TA143] gi|331668979|ref|ZP_08369827.1| NADH-quinone oxidoreductase subunit I [Escherichia coli TA271] gi|331673786|ref|ZP_08374549.1| NADH-quinone oxidoreductase subunit I [Escherichia coli TA280] gi|331678227|ref|ZP_08378902.1| NADH-quinone oxidoreductase subunit I [Escherichia coli H591] gi|331683953|ref|ZP_08384549.1| NADH-quinone oxidoreductase subunit I [Escherichia coli H299] gi|332278573|ref|ZP_08390986.1| NADH-quinone oxidoreductase subunit I [Shigella sp. D9] gi|84028753|sp|P0AFD8|NUOI_ECO57 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I; AltName: Full=NUO9 gi|84028754|sp|P0AFD7|NUOI_ECOL6 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I; AltName: Full=NUO9 gi|84028755|sp|P0AFD6|NUOI_ECOLI RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I; AltName: Full=NUO9 gi|84028756|sp|P0AFD9|NUOI_SHIFL RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I; AltName: Full=NUO9 gi|110287772|sp|Q31YI0|NUOI_SHIBS RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|115502527|sp|Q1R9D6|NUOI_ECOUT RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|123147879|sp|Q0TFG5|NUOI_ECOL5 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|123342668|sp|Q0T2K6|NUOI_SHIF8 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|156633517|sp|A1ADC9|NUOI_ECOK1 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|12516631|gb|AAG57410.1|AE005460_4 NADH dehydrogenase I chain I [Escherichia coli O157:H7 str. EDL933] gi|26109073|gb|AAN81276.1|AE016763_235 NADH dehydrogenase I chain I [Escherichia coli CFT073] gi|1788617|gb|AAC75341.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli str. K-12 substr. MG1655] gi|13362635|dbj|BAB36588.1| NADH dehydrogenase I chain I [Escherichia coli O157:H7 str. Sakai] gi|24052717|gb|AAN43870.1| NADH dehydrogenase I chain I [Shigella flexneri 2a str. 301] gi|30041962|gb|AAP17688.1| NADH dehydrogenase I chain I [Shigella flexneri 2a str. 2457T] gi|81246170|gb|ABB66878.1| NADH dehydrogenase I chain I [Shigella boydii Sb227] gi|85675342|dbj|BAA16109.2| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli str. K12 substr. W3110] gi|91073147|gb|ABE08028.1| NADH dehydrogenase I chain I [Escherichia coli UTI89] gi|110344077|gb|ABG70314.1| NADH dehydrogenase I chain I [Escherichia coli 536] gi|110615792|gb|ABF04459.1| NADH dehydrogenase I chain I [Shigella flexneri 5 str. 8401] gi|115513594|gb|ABJ01669.1| NADH dehydrogenase I chain I [Escherichia coli APEC O1] gi|157067449|gb|ABV06704.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli HS] gi|157079585|gb|ABV19293.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli E24377A] gi|169754338|gb|ACA77037.1| NADH-quinone oxidoreductase, chain I [Escherichia coli ATCC 8739] gi|169889733|gb|ACB03440.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli str. K-12 substr. DH10B] gi|170123921|gb|EDS92852.1| NADH-quinone oxidoreductase, I subunit [Escherichia albertii TW07627] gi|170518794|gb|ACB16972.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli SMS-3-5] gi|187428661|gb|ACD07935.1| NADH-quinone oxidoreductase, I subunit [Shigella boydii CDC 3083-94] gi|187771242|gb|EDU35086.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7 str. EC4196] gi|188017199|gb|EDU55321.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7 str. EC4113] gi|188488883|gb|EDU63986.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli 53638] gi|189002016|gb|EDU71002.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7 str. EC4076] gi|189357566|gb|EDU75985.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7 str. EC4401] gi|189362978|gb|EDU81397.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7 str. EC4486] gi|189368249|gb|EDU86665.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7 str. EC4501] gi|189372827|gb|EDU91243.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7 str. EC869] gi|189379037|gb|EDU97453.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7 str. EC508] gi|190903434|gb|EDV63153.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli B7A] gi|190909675|gb|EDV69260.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli F11] gi|192931901|gb|EDV84500.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli E22] gi|192958438|gb|EDV88877.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli E110019] gi|194414797|gb|EDX31068.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli B171] gi|194418427|gb|EDX34516.1| NADH-quinone oxidoreductase, I subunit [Shigella dysenteriae 1012] gi|194425082|gb|EDX41067.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli 101-1] gi|208725459|gb|EDZ75060.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7 str. EC4206] gi|208735358|gb|EDZ84045.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7 str. EC4045] gi|208738721|gb|EDZ86403.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7 str. EC4042] gi|209160574|gb|ACI38007.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7 str. EC4115] gi|209765138|gb|ACI80881.1| NADH dehydrogenase I chain I [Escherichia coli] gi|209765140|gb|ACI80882.1| NADH dehydrogenase I chain I [Escherichia coli] gi|209765142|gb|ACI80883.1| NADH dehydrogenase I chain I [Escherichia coli] gi|209765144|gb|ACI80884.1| NADH dehydrogenase I chain I [Escherichia coli] gi|209765146|gb|ACI80885.1| NADH dehydrogenase I chain I [Escherichia coli] gi|209912988|dbj|BAG78062.1| NADH dehydrogenase I chain I [Escherichia coli SE11] gi|215265566|emb|CAS09969.1| NADH: ubiquinone oxidoreductase, chain I [Escherichia coli O127:H6 str. E2348/69] gi|217319113|gb|EEC27538.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli O157:H7 str. TW14588] gi|218352612|emb|CAU98393.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli 55989] gi|218355811|emb|CAQ88424.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia fergusonii ATCC 35469] gi|218361605|emb|CAQ99197.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli IAI1] gi|218365963|emb|CAR03707.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli S88] gi|218370741|emb|CAR18554.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli IAI39] gi|218428005|emb|CAR08776.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli ED1a] gi|218432908|emb|CAR13802.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli UMN026] gi|222034037|emb|CAP76778.1| NadH-quinone oxidoreductase subunit I [Escherichia coli LF82] gi|226901121|gb|EEH87380.1| NADH:ubiquinone oxidoreductase [Escherichia sp. 3_2_53FAA] gi|227835687|gb|EEJ46153.1| NADH dehydrogenase subunit I [Escherichia coli 83972] gi|238861872|gb|ACR63870.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli BW2952] gi|242377914|emb|CAQ32683.1| NADH:ubiquinone oxidoreductase, chain I, subunit of connecting fragment of NADH dehydrogenase I and NADH:ubiquinone oxidoreductase I [Escherichia coli BL21(DE3)] gi|253323841|gb|ACT28443.1| NADH-quinone oxidoreductase, chain I [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974191|gb|ACT39862.1| NADH dehydrogenase subunit I [Escherichia coli B str. REL606] gi|253978358|gb|ACT44028.1| NADH dehydrogenase subunit I [Escherichia coli BL21(DE3)] gi|254593573|gb|ACT72934.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli O157:H7 str. TW14359] gi|257754974|dbj|BAI26476.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli O26:H11 str. 11368] gi|257760015|dbj|BAI31512.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli O103:H2 str. 12009] gi|257765360|dbj|BAI36855.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli O111:H- str. 11128] gi|260448626|gb|ACX39048.1| NADH-quinone oxidoreductase, chain I [Escherichia coli DH1] gi|281179368|dbj|BAI55698.1| NADH dehydrogenase I chain I [Escherichia coli SE15] gi|281601722|gb|ADA74706.1| NADH-quinone oxidoreductase subunit I [Shigella flexneri 2002017] gi|284922269|emb|CBG35354.1| NADH-quinone oxidoreductase subunit I [Escherichia coli 042] gi|290763395|gb|ADD57356.1| NADH-quinone oxidoreductase subunit I [Escherichia coli O55:H7 str. CB9615] gi|291323448|gb|EFE62876.1| NADH dehydrogenase I subunit I [Escherichia coli B088] gi|291427955|gb|EFF00982.1| NADH-quinone oxidoreductase [Escherichia coli FVEC1412] gi|291433222|gb|EFF06201.1| NADH dehydrogenase I subunit I [Escherichia coli B185] gi|291471109|gb|EFF13593.1| conserved hypothetical protein [Escherichia coli B354] gi|294489898|gb|ADE88654.1| NADH-quinone oxidoreductase, I subunit [Escherichia coli IHE3034] gi|298278872|gb|EFI20386.1| NADH-quinone oxidoreductase subunit I [Escherichia coli FVEC1302] gi|299879498|gb|EFI87709.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 196-1] gi|300299143|gb|EFJ55528.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 185-1] gi|300307690|gb|EFJ62210.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 200-1] gi|300316729|gb|EFJ66513.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 175-1] gi|300359223|gb|EFJ75093.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 198-1] gi|300396735|gb|EFJ80273.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 69-1] gi|300404322|gb|EFJ87860.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 84-1] gi|300408542|gb|EFJ92080.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 45-1] gi|300414289|gb|EFJ97599.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 115-1] gi|300419258|gb|EFK02569.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 182-1] gi|300451923|gb|EFK15543.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 116-1] gi|300458032|gb|EFK21525.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 21-1] gi|300460828|gb|EFK24321.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 187-1] gi|300525282|gb|EFK46351.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 119-7] gi|300529263|gb|EFK50325.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 107-1] gi|300841434|gb|EFK69194.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 124-1] gi|300844835|gb|EFK72595.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 78-1] gi|301074249|gb|EFK89055.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 146-1] gi|305852002|gb|EFM52454.1| NADH dehydrogenase subunit I [Escherichia coli NC101] gi|306908665|gb|EFN39162.1| NADH-quinone oxidoreductase, chain I [Escherichia coli W] gi|307554343|gb|ADN47118.1| NADH dehydrogenase I chain I [Escherichia coli ABU 83972] gi|307626183|gb|ADN70487.1| NADH dehydrogenase subunit I [Escherichia coli UM146] gi|308123446|gb|EFO60708.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 145-7] gi|309702593|emb|CBJ01921.1| NADH-quinone oxidoreductase subunit I [Escherichia coli ETEC H10407] gi|310332055|gb|EFP99290.1| NADH-quinone oxidoreductase, chain I family protein [Escherichia coli 1827-70] gi|312946899|gb|ADR27726.1| NADH dehydrogenase subunit I [Escherichia coli O83:H1 str. NRG 857C] gi|313651104|gb|EFS15503.1| NADH-quinone oxidoreductase, chain I family protein [Shigella flexneri 2a str. 2457T] gi|315061573|gb|ADT75900.1| NADH:ubiquinone oxidoreductase, chain I [Escherichia coli W] gi|315136915|dbj|BAJ44074.1| NADH-quinone oxidoreductase subunit I [Escherichia coli DH1] gi|315255215|gb|EFU35183.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 85-1] gi|315285919|gb|EFU45357.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 110-3] gi|315292246|gb|EFU51598.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 153-1] gi|315298120|gb|EFU57389.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 16-3] gi|320177163|gb|EFW52175.1| NADH-ubiquinone oxidoreductase chain I [Shigella dysenteriae CDC 74-1112] gi|320178746|gb|EFW53709.1| NADH-ubiquinone oxidoreductase chain I [Shigella boydii ATCC 9905] gi|320183376|gb|EFW58228.1| NADH-ubiquinone oxidoreductase chain I [Shigella flexneri CDC 796-83] gi|320192098|gb|EFW66743.1| NADH-ubiquinone oxidoreductase chain I [Escherichia coli O157:H7 str. EC1212] gi|320196148|gb|EFW70772.1| NADH-ubiquinone oxidoreductase chain I [Escherichia coli WV_060327] gi|320199869|gb|EFW74458.1| NADH-ubiquinone oxidoreductase chain I [Escherichia coli EC4100B] gi|320641108|gb|EFX10587.1| NADH dehydrogenase subunit I [Escherichia coli O157:H7 str. G5101] gi|320646496|gb|EFX15415.1| NADH dehydrogenase subunit I [Escherichia coli O157:H- str. 493-89] gi|320651593|gb|EFX19973.1| NADH dehydrogenase subunit I [Escherichia coli O157:H- str. H 2687] gi|320657345|gb|EFX25147.1| NADH dehydrogenase subunit I [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663047|gb|EFX30364.1| NADH dehydrogenase subunit I [Escherichia coli O55:H7 str. USDA 5905] gi|320667865|gb|EFX34773.1| NADH dehydrogenase subunit I [Escherichia coli O157:H7 str. LSU-61] gi|323156431|gb|EFZ42586.1| NADH-quinone oxidoreductase, chain I family protein [Escherichia coli EPECa14] gi|323161615|gb|EFZ47500.1| NADH-quinone oxidoreductase, chain I family protein [Escherichia coli E128010] gi|323171962|gb|EFZ57606.1| NADH-quinone oxidoreductase, chain I family protein [Escherichia coli LT-68] gi|323176794|gb|EFZ62384.1| NADH-quinone oxidoreductase, chain I family protein [Escherichia coli 1180] gi|323184400|gb|EFZ69776.1| NADH-quinone oxidoreductase, chain I family protein [Escherichia coli 1357] gi|323187994|gb|EFZ73289.1| NADH-quinone oxidoreductase, chain I family protein [Escherichia coli RN587/1] gi|323377847|gb|ADX50115.1| NADH-quinone oxidoreductase, chain I [Escherichia coli KO11] gi|323936571|gb|EGB32858.1| NADH-quinone oxidoreductase [Escherichia coli E1520] gi|323941022|gb|EGB37209.1| NADH-quinone oxidoreductase [Escherichia coli E482] gi|323944794|gb|EGB40860.1| NADH-quinone oxidoreductase [Escherichia coli H120] gi|323952074|gb|EGB47948.1| NADH-quinone oxidoreductase [Escherichia coli H252] gi|323956047|gb|EGB51800.1| NADH-quinone oxidoreductase [Escherichia coli H263] gi|323961464|gb|EGB57074.1| NADH-quinone oxidoreductase [Escherichia coli H489] gi|323967722|gb|EGB63134.1| NADH-quinone oxidoreductase [Escherichia coli M863] gi|323973014|gb|EGB68208.1| NADH-quinone oxidoreductase [Escherichia coli TA007] gi|323977518|gb|EGB72604.1| NADH-quinone oxidoreductase [Escherichia coli TW10509] gi|324006669|gb|EGB75888.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 57-2] gi|324013179|gb|EGB82398.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 60-1] gi|324020877|gb|EGB90096.1| NADH-quinone oxidoreductase, chain I [Escherichia coli MS 117-3] gi|324112813|gb|EGC06789.1| NADH-quinone oxidoreductase [Escherichia fergusonii B253] gi|324117841|gb|EGC11740.1| NADH-quinone oxidoreductase [Escherichia coli E1167] gi|325496684|gb|EGC94543.1| NADH dehydrogenase subunit I [Escherichia fergusonii ECD227] gi|326339632|gb|EGD63443.1| NADH-ubiquinone oxidoreductase chain I [Escherichia coli O157:H7 str. 1125] gi|326344094|gb|EGD67855.1| NADH-ubiquinone oxidoreductase chain I [Escherichia coli O157:H7 str. 1044] gi|327252551|gb|EGE64210.1| NADH-quinone oxidoreductase, chain I family protein [Escherichia coli STEC_7v] gi|330912106|gb|EGH40616.1| NADH-ubiquinone oxidoreductase chain 1 [Escherichia coli AA86] gi|331039717|gb|EGI11937.1| NADH-quinone oxidoreductase subunit I [Escherichia coli H736] gi|331043660|gb|EGI15798.1| NADH-quinone oxidoreductase subunit I [Escherichia coli M605] gi|331048572|gb|EGI20648.1| NADH-quinone oxidoreductase subunit I [Escherichia coli M718] gi|331059594|gb|EGI31571.1| NADH-quinone oxidoreductase subunit I [Escherichia coli TA143] gi|331064173|gb|EGI36084.1| NADH-quinone oxidoreductase subunit I [Escherichia coli TA271] gi|331069059|gb|EGI40451.1| NADH-quinone oxidoreductase subunit I [Escherichia coli TA280] gi|331074687|gb|EGI46007.1| NADH-quinone oxidoreductase subunit I [Escherichia coli H591] gi|331078905|gb|EGI50107.1| NADH-quinone oxidoreductase subunit I [Escherichia coli H299] gi|332088411|gb|EGI93529.1| NADH-quinone oxidoreductase, chain I family protein [Shigella boydii 5216-82] gi|332090608|gb|EGI95704.1| NADH-quinone oxidoreductase, chain I family protein [Shigella dysenteriae 155-74] gi|332093681|gb|EGI98739.1| NADH-quinone oxidoreductase, chain I family protein [Shigella boydii 3594-74] gi|332100925|gb|EGJ04271.1| NADH-quinone oxidoreductase subunit I [Shigella sp. D9] gi|332344062|gb|AEE57396.1| NADH-quinone oxidoreductase, chain I [Escherichia coli UMNK88] gi|332755330|gb|EGJ85694.1| NADH-quinone oxidoreductase, chain I family protein [Shigella flexneri K-671] gi|332756322|gb|EGJ86673.1| NADH-quinone oxidoreductase, chain I family protein [Shigella flexneri 2747-71] gi|332766100|gb|EGJ96310.1| nuoI [Shigella flexneri 2930-71] gi|333001425|gb|EGK20993.1| NADH-quinone oxidoreductase, chain I family protein [Shigella flexneri VA-6] gi|333001967|gb|EGK21533.1| NADH-quinone oxidoreductase, chain I family protein [Shigella flexneri K-218] gi|333002648|gb|EGK22208.1| NADH-quinone oxidoreductase, chain I family protein [Shigella flexneri K-272] gi|333016230|gb|EGK35561.1| NADH-quinone oxidoreductase, chain I family protein [Shigella flexneri K-304] gi|333016532|gb|EGK35862.1| NADH-quinone oxidoreductase, chain I family protein [Shigella flexneri K-227] Length = 180 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 56/142 (39%), Positives = 76/142 (53%), Gaps = 8/142 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LKE + F +R + F + T YP E PR+RG L R P+GEERC Sbjct: 1 MTLKELLVGFGTQVRSIWMIGLHAFAKRETRMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC CP I+++ DG + I+ +CI+CGLC+EACP AI P+ Sbjct: 61 VACNLCAVACPVGCISLQKAE-TKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119 Query: 124 FEFATETRQELYYDKERLLNNG 145 FE RQ+L Y+KE LL +G Sbjct: 120 FEMGEYKRQDLVYEKEDLLISG 141 >gi|74312799|ref|YP_311218.1| NADH dehydrogenase subunit I [Shigella sonnei Ss046] gi|110287774|sp|Q3YZS9|NUOI_SHISS RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|73856276|gb|AAZ88983.1| NADH dehydrogenase I chain I [Shigella sonnei Ss046] gi|323168550|gb|EFZ54230.1| NADH-quinone oxidoreductase, chain I family protein [Shigella sonnei 53G] Length = 180 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 56/142 (39%), Positives = 76/142 (53%), Gaps = 8/142 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LKE + F +R + F + T YP E PR+RG L R P+GEERC Sbjct: 1 MTLKELLVGFGTQVRSIWMIGLHAFAKRETRMYPEEPIYLPPRYRGRIVLTRDPDGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC CP I+++ DG + I+ +CI+CGLC+EACP AI P+ Sbjct: 61 VACNLCAVACPVGCISLQKAE-TKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119 Query: 124 FEFATETRQELYYDKERLLNNG 145 FE RQ+L Y+KE LL +G Sbjct: 120 FEMGEYKRQDLVYEKEDLLISG 141 >gi|328950039|ref|YP_004367374.1| NAD(P)H-quinone oxidoreductase subunit I [Marinithermus hydrothermalis DSM 14884] gi|328450363|gb|AEB11264.1| NAD(P)H-quinone oxidoreductase subunit I [Marinithermus hydrothermalis DSM 14884] Length = 176 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 55/146 (37%), Positives = 78/146 (53%), Gaps = 7/146 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + L++ F TI YP PR++G H L R+PNG E+CI C LC A+CPA Sbjct: 6 LAKSLGITLKHLFSKPVTIPYPDAPVPLKPRYKGRHVLTRHPNGLEKCIGCSLCAAVCPA 65 Query: 76 QAITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 AI +E+ + G R Y+I+M++CI+CGLC+EACP A+V G FE A Sbjct: 66 YAIYVEAAENDPENPVSAGERYAKVYEINMLRCIFCGLCEEACPTGAVVLGNEFEMADYR 125 Query: 131 RQELYYDKERLL--NNGDRWESEIVR 154 + Y KE +L G + + R Sbjct: 126 YSDHIYSKEDMLVEVVGSKPQRREAR 151 >gi|304311502|ref|YP_003811100.1| NADH dehydrogenase I, chain I [gamma proteobacterium HdN1] gi|301797235|emb|CBL45455.1| NADH dehydrogenase I, chain I [gamma proteobacterium HdN1] Length = 185 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 54/129 (41%), Positives = 77/129 (59%), Gaps = 1/129 (0%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + + + + F + TI+YP + PR+RG L R P+GEERC+AC LC A CPAQ Sbjct: 19 LVSMYEVFMHSFAKRDTISYPEQPVYLPPRYRGRIVLTRDPDGEERCVACNLCAAACPAQ 78 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 I+++ R G + I+ +CI+CG+C+EACP AI P+FE A RQ+L Y Sbjct: 79 CISLQKAERDD-GRWYPEFFRINFSRCIFCGMCEEACPTTAIQLTPDFEMAEFRRQDLVY 137 Query: 137 DKERLLNNG 145 +KE LL +G Sbjct: 138 EKEDLLISG 146 >gi|296112939|ref|YP_003626877.1| NADH-quinone oxidoreductase subunit I [Moraxella catarrhalis RH4] gi|295920633|gb|ADG60984.1| NADH-quinone oxidoreductase subunit I [Moraxella catarrhalis RH4] Length = 182 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 50/133 (37%), Positives = 74/133 (55%), Gaps = 1/133 (0%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + V + ++ + + + TI YP + PRFRG L R P+G+ERC+AC LC Sbjct: 12 MFTIVHSMWMVNSHALRPRDTILYPEQPVPVPPRFRGRIVLTRDPDGDERCVACNLCAVA 71 Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 CP I+++ R DG + I+ +C++CG+C+EACP AI P+FE RQ Sbjct: 72 CPVGCISLQKAER-EDGRWYPEFFRINFSRCVFCGMCEEACPTTAIQLTPDFELGEYDRQ 130 Query: 133 ELYYDKERLLNNG 145 L Y+KE LL +G Sbjct: 131 NLVYEKEHLLISG 143 >gi|294140408|ref|YP_003556386.1| NADH dehydrogenase I subunit I [Shewanella violacea DSS12] gi|293326877|dbj|BAJ01608.1| NADH dehydrogenase I, I subunit [Shewanella violacea DSS12] Length = 184 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 54/144 (37%), Positives = 76/144 (52%), Gaps = 2/144 (1%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 I+ ++ L + + L++ F T+ YP +K SPR+RG L R P+GEE Sbjct: 4 NIWFLTGEWIMLSQIRTLIAI-LKHTFTPAYTVQYPEQKPYLSPRYRGRIVLTRDPDGEE 62 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RC+AC LC CP I++E + G + I+ +CI CG C+EACP AI Sbjct: 63 RCVACNLCSVACPVDCISVEKTEKPD-GRWEAKTFTINFSRCIMCGFCEEACPTHAIQLT 121 Query: 122 PNFEFATETRQELYYDKERLLNNG 145 P+FE A RQ L Y+K LL +G Sbjct: 122 PDFEMAEYDRQNLVYEKHHLLISG 145 >gi|227497690|ref|ZP_03927899.1| NADH dehydrogenase (quinone) [Actinomyces urogenitalis DSM 15434] gi|226832867|gb|EEH65250.1| NADH dehydrogenase (quinone) [Actinomyces urogenitalis DSM 15434] Length = 232 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 48/133 (36%), Positives = 67/133 (50%), Gaps = 6/133 (4%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V + + + F+ T YPF + PR+ G H L RY +G ERCI C+LC CPA Sbjct: 35 VAGYGVTISSIFRPTVTEQYPFVRPVLMPRYHGRHQLNRYDDGLERCIGCELCAWACPAD 94 Query: 77 AITIESGPRCH-----DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF-EFATET 130 AI +E+ G R Y I+ ++CI+CG+C EACP A+ E + Sbjct: 95 AIYVEAASNAPGAQYSPGERYGRVYQINYLRCIFCGMCIEACPTRALTMTHEIDELVGPS 154 Query: 131 RQELYYDKERLLN 143 R L Y+K+ LL Sbjct: 155 RGGLIYEKQDLLA 167 >gi|157144788|ref|YP_001452107.1| NADH dehydrogenase subunit I [Citrobacter koseri ATCC BAA-895] gi|157081993|gb|ABV11671.1| hypothetical protein CKO_00515 [Citrobacter koseri ATCC BAA-895] Length = 180 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 55/142 (38%), Positives = 75/142 (52%), Gaps = 8/142 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LKE + F +R + F + T YP E PR+RG L R P+GEERC Sbjct: 1 MTLKELLVGFGTQVRSIWMIGLHAFAKRETQMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC CP I+++ G + I+ +CI+CGLC+EACP AI P+ Sbjct: 61 VACNLCAVACPVGCISLQKAEMKD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119 Query: 124 FEFATETRQELYYDKERLLNNG 145 FE RQ+L Y+KE LL +G Sbjct: 120 FEMGEYKRQDLVYEKEDLLISG 141 >gi|157371538|ref|YP_001479527.1| NADH dehydrogenase subunit I [Serratia proteamaculans 568] gi|270262807|ref|ZP_06191078.1| NADH-quinone oxidoreductase subunit I [Serratia odorifera 4Rx13] gi|157323302|gb|ABV42399.1| NADH-quinone oxidoreductase, chain I [Serratia proteamaculans 568] gi|270043491|gb|EFA16584.1| NADH-quinone oxidoreductase subunit I [Serratia odorifera 4Rx13] Length = 180 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 55/142 (38%), Positives = 76/142 (53%), Gaps = 8/142 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LKE + F +R + F + T YP E PR+RG L R P+GEERC Sbjct: 1 MTLKELLVGFGTQVRSIWMIGLHAFAKRETQMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC CP I+++ + G + I+ +CI+CGLC+EACP AI P+ Sbjct: 61 VACNLCAVACPVGCISLQKAEQKD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119 Query: 124 FEFATETRQELYYDKERLLNNG 145 FE RQ+L Y+KE LL +G Sbjct: 120 FEMGEFKRQDLVYEKEDLLISG 141 >gi|329296025|ref|ZP_08253361.1| NADH dehydrogenase subunit I [Plautia stali symbiont] Length = 180 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 54/140 (38%), Positives = 73/140 (52%), Gaps = 8/140 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LK+ V F +R + F + T YP E PR+RG L R P+GEERC Sbjct: 1 MTLKDIVVGFGTTVRSIWMIGMHAFAKRETQMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC CP I+++ G + I+ +CI+CGLC+EACP AI P+ Sbjct: 61 VACNLCAVACPVGCISLQKAEMQD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119 Query: 124 FEFATETRQELYYDKERLLN 143 FE RQ+L Y+KE LL Sbjct: 120 FELGEFKRQDLVYEKEDLLI 139 >gi|238759969|ref|ZP_04621122.1| NADH-quinone oxidoreductase subunit I [Yersinia aldovae ATCC 35236] gi|238701796|gb|EEP94360.1| NADH-quinone oxidoreductase subunit I [Yersinia aldovae ATCC 35236] Length = 180 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 56/142 (39%), Positives = 75/142 (52%), Gaps = 8/142 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LKE V F +R + F + T YP E PR+RG L R P+GEERC Sbjct: 1 MTLKELVVGFGTQVRSLWMIGLHAFHKRETQMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC CP I+++ G + I+ +CI+CGLC+EACP AI P+ Sbjct: 61 VACNLCAVACPVGCISLQKAEHQD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119 Query: 124 FEFATETRQELYYDKERLLNNG 145 FE RQ+L Y+KE LL +G Sbjct: 120 FEMGEFKRQDLVYEKEDLLISG 141 >gi|22125532|ref|NP_668955.1| NADH dehydrogenase subunit I [Yersinia pestis KIM 10] gi|45442148|ref|NP_993687.1| NADH dehydrogenase subunit I [Yersinia pestis biovar Microtus str. 91001] gi|51596899|ref|YP_071090.1| NADH dehydrogenase subunit I [Yersinia pseudotuberculosis IP 32953] gi|108808035|ref|YP_651951.1| NADH dehydrogenase subunit I [Yersinia pestis Antiqua] gi|108812305|ref|YP_648072.1| NADH dehydrogenase subunit I [Yersinia pestis Nepal516] gi|145599238|ref|YP_001163314.1| NADH dehydrogenase subunit I [Yersinia pestis Pestoides F] gi|149365546|ref|ZP_01887581.1| NADH Dehydrogenase I chain I [Yersinia pestis CA88-4125] gi|153950602|ref|YP_001400439.1| NADH dehydrogenase subunit I [Yersinia pseudotuberculosis IP 31758] gi|162421132|ref|YP_001606298.1| NADH dehydrogenase subunit I [Yersinia pestis Angola] gi|165925636|ref|ZP_02221468.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165937677|ref|ZP_02226239.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar Orientalis str. IP275] gi|166008508|ref|ZP_02229406.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166213832|ref|ZP_02239867.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|167399268|ref|ZP_02304792.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422344|ref|ZP_02314097.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424548|ref|ZP_02316301.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470944|ref|ZP_02335648.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis FV-1] gi|170023808|ref|YP_001720313.1| NADH dehydrogenase subunit I [Yersinia pseudotuberculosis YPIII] gi|186895980|ref|YP_001873092.1| NADH dehydrogenase subunit I [Yersinia pseudotuberculosis PB1/+] gi|218929634|ref|YP_002347509.1| NADH dehydrogenase subunit I [Yersinia pestis CO92] gi|229838090|ref|ZP_04458249.1| NADH:ubiquinone oxidoreductase, chain I [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895289|ref|ZP_04510463.1| NADH:ubiquinone oxidoreductase, chain I [Yersinia pestis Pestoides A] gi|229898650|ref|ZP_04513795.1| NADH:ubiquinone oxidoreductase, chain I [Yersinia pestis biovar Orientalis str. India 195] gi|229902649|ref|ZP_04517766.1| NADH:ubiquinone oxidoreductase, chain I [Yersinia pestis Nepal516] gi|270490170|ref|ZP_06207244.1| NADH-quinone oxidoreductase, chain I [Yersinia pestis KIM D27] gi|294504362|ref|YP_003568424.1| NADH dehydrogenase subunit I [Yersinia pestis Z176003] gi|81639048|sp|Q669A7|NUOI_YERPS RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|123072748|sp|Q1C6B6|NUOI_YERPA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|123073347|sp|Q1CHQ8|NUOI_YERPN RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|123777027|sp|Q7CJ89|NUOI_YERPE RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|156633544|sp|A4TM29|NUOI_YERPP RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|254772597|sp|A7FGR1|NUOI_YERP3 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|254772598|sp|B2K814|NUOI_YERPB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|254772599|sp|A9R6L4|NUOI_YERPG RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|254772600|sp|B1JGM0|NUOI_YERPY RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|21958432|gb|AAM85206.1|AE013767_3 NADH dehydrogenase I chain I [Yersinia pestis KIM 10] gi|45437012|gb|AAS62564.1| NADH Dehydrogenase I chain I [Yersinia pestis biovar Microtus str. 91001] gi|51590181|emb|CAH21818.1| NADH dehydrogenase I chain I [Yersinia pseudotuberculosis IP 32953] gi|108775953|gb|ABG18472.1| NADH Dehydrogenase I chain I [Yersinia pestis Nepal516] gi|108779948|gb|ABG14006.1| NADH Dehydrogenase I chain I [Yersinia pestis Antiqua] gi|115348245|emb|CAL21173.1| NADH Dehydrogenase I chain I [Yersinia pestis CO92] gi|145210934|gb|ABP40341.1| NADH Dehydrogenase I chain I [Yersinia pestis Pestoides F] gi|149291959|gb|EDM42033.1| NADH Dehydrogenase I chain I [Yersinia pestis CA88-4125] gi|152962097|gb|ABS49558.1| NADH-quinone oxidoreductase, I subunit [Yersinia pseudotuberculosis IP 31758] gi|162353947|gb|ABX87895.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis Angola] gi|165914427|gb|EDR33042.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar Orientalis str. IP275] gi|165922745|gb|EDR39896.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165992890|gb|EDR45191.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166205006|gb|EDR49486.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|166958850|gb|EDR55871.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167051772|gb|EDR63180.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056430|gb|EDR66199.1| NADH-quinone oxidoreductase, I subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169750342|gb|ACA67860.1| NADH-quinone oxidoreductase, chain I [Yersinia pseudotuberculosis YPIII] gi|186699006|gb|ACC89635.1| NADH-quinone oxidoreductase, chain I [Yersinia pseudotuberculosis PB1/+] gi|229680096|gb|EEO76195.1| NADH:ubiquinone oxidoreductase, chain I [Yersinia pestis Nepal516] gi|229688198|gb|EEO80269.1| NADH:ubiquinone oxidoreductase, chain I [Yersinia pestis biovar Orientalis str. India 195] gi|229694456|gb|EEO84503.1| NADH:ubiquinone oxidoreductase, chain I [Yersinia pestis biovar Orientalis str. PEXU2] gi|229701775|gb|EEO89800.1| NADH:ubiquinone oxidoreductase, chain I [Yersinia pestis Pestoides A] gi|262362649|gb|ACY59370.1| NADH dehydrogenase subunit I [Yersinia pestis D106004] gi|262366278|gb|ACY62835.1| NADH dehydrogenase subunit I [Yersinia pestis D182038] gi|270338674|gb|EFA49451.1| NADH-quinone oxidoreductase, chain I [Yersinia pestis KIM D27] gi|294354821|gb|ADE65162.1| NADH dehydrogenase subunit I [Yersinia pestis Z176003] gi|320014614|gb|ADV98185.1| NADH:ubiquinone oxidoreductase, chain I [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 180 Score = 125 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 56/142 (39%), Positives = 77/142 (54%), Gaps = 8/142 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LKE V F +R + F + T+ YP E PR+RG L R P+GEERC Sbjct: 1 MTLKELVVGFGTQVRSLWMIGLHAFHKRETLMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC CP I+++ + G + I+ +CI+CGLC+EACP AI P+ Sbjct: 61 VACNLCAVACPVGCISLQKAEQKD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119 Query: 124 FEFATETRQELYYDKERLLNNG 145 FE RQ+L Y+KE LL +G Sbjct: 120 FEMGEFKRQDLVYEKEDLLISG 141 >gi|290475910|ref|YP_003468805.1| NADH dehydrogenase I subunit I, 2Fe-2S ferredoxin-related [Xenorhabdus bovienii SS-2004] gi|289175238|emb|CBJ82041.1| NADH dehydrogenase I chain I, 2Fe-2S ferredoxin-related [Xenorhabdus bovienii SS-2004] Length = 180 Score = 125 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 57/142 (40%), Positives = 77/142 (54%), Gaps = 8/142 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LKE V F +R + F + T YP E PR+RG L R P+GEERC Sbjct: 1 MTLKELVVGFATQVRSIWMIGLHAFHKRETKMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC A+CP I+++ G + I+ +CI+CGLC+EACP AI P+ Sbjct: 61 VACNLCAAVCPVGCISLQKAEHKD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119 Query: 124 FEFATETRQELYYDKERLLNNG 145 FE RQ+L Y+KE LL +G Sbjct: 120 FELGEFKRQDLVYEKEDLLISG 141 >gi|238798411|ref|ZP_04641892.1| NADH-quinone oxidoreductase subunit I [Yersinia mollaretii ATCC 43969] gi|238717725|gb|EEQ09560.1| NADH-quinone oxidoreductase subunit I [Yersinia mollaretii ATCC 43969] Length = 180 Score = 125 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 56/142 (39%), Positives = 76/142 (53%), Gaps = 8/142 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LKE V F +R + F + T YP E PR+RG L R P+GEERC Sbjct: 1 MTLKELVVGFGTQVRSLWMIGLHAFHKRETQMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC CP I+++ + G + I+ +CI+CGLC+EACP AI P+ Sbjct: 61 VACNLCAVACPVGCISLQKAEQKD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119 Query: 124 FEFATETRQELYYDKERLLNNG 145 FE RQ+L Y+KE LL +G Sbjct: 120 FEMGEFKRQDLVYEKEDLLISG 141 >gi|82777689|ref|YP_404038.1| NADH dehydrogenase subunit I [Shigella dysenteriae Sd197] gi|110287773|sp|Q32DQ8|NUOI_SHIDS RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|81241837|gb|ABB62547.1| NADH dehydrogenase I chain I [Shigella dysenteriae Sd197] Length = 180 Score = 125 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 56/142 (39%), Positives = 76/142 (53%), Gaps = 8/142 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LKE + F +R + F + T YP E PR+RG L R P+GEERC Sbjct: 1 MTLKELLVGFGTQVRSIWMIGLHAFAKRETRMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC CP I+++ DG + I+ +CI+CGLC+EACP AI P+ Sbjct: 61 VACNLCAVACPVGCISLQKTE-TKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119 Query: 124 FEFATETRQELYYDKERLLNNG 145 FE RQ+L Y+KE LL +G Sbjct: 120 FEMGEYKRQDLVYEKEDLLISG 141 >gi|317492616|ref|ZP_07951043.1| NADH-quinone oxidoreductase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919366|gb|EFV40698.1| NADH-quinone oxidoreductase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 180 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 57/142 (40%), Positives = 76/142 (53%), Gaps = 8/142 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LKE V F +R + F + T YP E PR+RG L R P+GEERC Sbjct: 1 MTLKELVVGFGTQVRSLWMIGLHAFAKRETQMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC CP I+++ DG + I+ +CI+CGLC+EACP AI P+ Sbjct: 61 VACNLCAVACPVGCISLQKAE-TKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119 Query: 124 FEFATETRQELYYDKERLLNNG 145 FE RQ+L Y+KE LL +G Sbjct: 120 FELGEFKRQDLVYEKEDLLISG 141 >gi|297565706|ref|YP_003684678.1| NADH-quinone oxidoreductase subunit I [Meiothermus silvanus DSM 9946] gi|296850155|gb|ADH63170.1| NADH-quinone oxidoreductase, chain I [Meiothermus silvanus DSM 9946] Length = 199 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 58/152 (38%), Positives = 78/152 (51%), Gaps = 10/152 (6%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + LR F TI YP PR+ G H L R+PNG E+CI C LC AICPA Sbjct: 7 LAQSLGITLRALFSKPVTIPYPDAPVPLKPRWHGRHVLTRHPNGLEKCIGCSLCAAICPA 66 Query: 76 QAITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 AI +E G R Y+I+M++CI+CGLC+EACP A+V G +FE A Sbjct: 67 YAIYVEPAENDPAHPTSAGERYAKVYEINMLRCIFCGLCEEACPTGAVVLGYDFEMADYR 126 Query: 131 RQELYYDKERLLNNGDRWESEIVRNIVTDSPY 162 +L Y KE +L E + + ++ Y Sbjct: 127 YSDLIYGKEDMLV-----EVQGTKPQRREAVY 153 >gi|293395177|ref|ZP_06639463.1| NADH dehydrogenase I subunit I [Serratia odorifera DSM 4582] gi|291422354|gb|EFE95597.1| NADH dehydrogenase I subunit I [Serratia odorifera DSM 4582] Length = 180 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 56/142 (39%), Positives = 77/142 (54%), Gaps = 8/142 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LKE V F +R + F + T YP E + PR+RG L R P+GEERC Sbjct: 1 MTLKELVVGFGTQVRSIWMIGLHAFAKRETRMYPEEPVNLPPRYRGRIVLTRDPDGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC CP I+++ + G + I+ +CI+CGLC+EACP AI P+ Sbjct: 61 VACNLCAVACPVGCISLQKAEQKD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119 Query: 124 FEFATETRQELYYDKERLLNNG 145 FE RQ+L Y+KE LL +G Sbjct: 120 FEMGEFKRQDLVYEKEDLLISG 141 >gi|257054400|ref|YP_003132232.1| NADH dehydrogenase subunit I [Saccharomonospora viridis DSM 43017] gi|256584272|gb|ACU95405.1| NADH dehydrogenase subunit I [Saccharomonospora viridis DSM 43017] Length = 187 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 50/136 (36%), Positives = 70/136 (51%), Gaps = 5/136 (3%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + + + F + FK T YP +PR+ G H L R+P+G E+C+ C+LC Sbjct: 3 IFDPIKGFGVTFATMFKKVATEEYPEAGAPAAPRYHGRHQLNRHPDGLEKCVGCELCAWA 62 Query: 73 CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CPA AI +E R G R Y I+ ++CI CGLC EACP ++ +E A Sbjct: 63 CPADAIYVEGGDNTEEARYSPGERYGKNYQINYLRCIGCGLCVEACPTRSLTMINFYELA 122 Query: 128 TETRQELYYDKERLLN 143 + RQ+L Y KE LL Sbjct: 123 DDDRQKLIYTKEDLLA 138 >gi|238794600|ref|ZP_04638207.1| NADH-quinone oxidoreductase subunit I [Yersinia intermedia ATCC 29909] gi|238726086|gb|EEQ17633.1| NADH-quinone oxidoreductase subunit I [Yersinia intermedia ATCC 29909] Length = 180 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 56/142 (39%), Positives = 75/142 (52%), Gaps = 8/142 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LKE V F +R + F + T YP E PR+RG L R P+GEERC Sbjct: 1 MTLKELVVGFGTQVRSLWMIGLHAFHKRETQMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC CP I+++ G + I+ +CI+CGLC+EACP AI P+ Sbjct: 61 VACNLCAVACPVGCISLQKAEHKD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119 Query: 124 FEFATETRQELYYDKERLLNNG 145 FE RQ+L Y+KE LL +G Sbjct: 120 FEMGEFKRQDLVYEKEDLLISG 141 >gi|78221388|ref|YP_383135.1| NADH dehydrogenase subunit I [Geobacter metallireducens GS-15] gi|110287755|sp|Q39ZB4|NUOI1_GEOMG RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName: Full=NADH dehydrogenase I subunit I 1; AltName: Full=NDH-1 subunit I 1 gi|78192643|gb|ABB30410.1| NADH dehydrogenase subunit I [Geobacter metallireducens GS-15] Length = 184 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 51/133 (38%), Positives = 72/133 (54%), Gaps = 1/133 (0%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 K F+ ++ F+ T+ YP K + +PR+R L R P G ERC+AC LC A Sbjct: 15 FKAIATGLFVTWKHIFRRSVTVEYPEVKRTPAPRYRARIVLTRDPEGGERCVACYLCSAA 74 Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 CP I++E+ +G R + I+ +CI+CGLC EACP AI P++E Sbjct: 75 CPVDCISMEATED-GNGRRYARWFRINFSRCIFCGLCAEACPTLAIQMTPDYEICERDIM 133 Query: 133 ELYYDKERLLNNG 145 EL Y+KE LL +G Sbjct: 134 ELVYEKEDLLIDG 146 >gi|262369340|ref|ZP_06062668.1| NADH-quinone oxidoreductase subunit I [Acinetobacter johnsonii SH046] gi|262315408|gb|EEY96447.1| NADH-quinone oxidoreductase subunit I [Acinetobacter johnsonii SH046] Length = 180 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 51/135 (37%), Positives = 73/135 (54%), Gaps = 3/135 (2%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGS--TSPRFRGEHALRRYPNGEERCIACKLCE 70 V + ++ + + + TI YP PRFRG L R P+GEERC+AC LC Sbjct: 8 FGSIVRSLWMVFSHVTRKRDTILYPEVPAEQIVPPRFRGRIVLTRDPDGEERCVACNLCA 67 Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 CP I+++ + DG + I+ +CI+CG+C+EACP AI P+FE Sbjct: 68 VACPVGCISLQKAEK-EDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQMTPDFELGEYV 126 Query: 131 RQELYYDKERLLNNG 145 RQ+L Y+KE LL +G Sbjct: 127 RQDLVYEKENLLISG 141 >gi|262376770|ref|ZP_06069998.1| NADH-plastoquinone oxidoreductase, I subunit [Acinetobacter lwoffii SH145] gi|262308480|gb|EEY89615.1| NADH-plastoquinone oxidoreductase, I subunit [Acinetobacter lwoffii SH145] Length = 180 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 52/135 (38%), Positives = 73/135 (54%), Gaps = 3/135 (2%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGS--TSPRFRGEHALRRYPNGEERCIACKLCE 70 V + ++ + + + TI YP PRFRG L R P+GEERC+AC LC Sbjct: 8 FGSIVRSLWMVFSHATRKRDTILYPEVPAEEIVPPRFRGRIVLTRDPDGEERCVACNLCA 67 Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 CP I+++ R DG + I+ +CI+CG+C+EACP AI P+FE Sbjct: 68 VACPVGCISLQKAER-EDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQMTPDFELGEYV 126 Query: 131 RQELYYDKERLLNNG 145 RQ+L Y+KE LL +G Sbjct: 127 RQDLVYEKEHLLISG 141 >gi|223937084|ref|ZP_03628992.1| NADH-quinone oxidoreductase, chain I [bacterium Ellin514] gi|223894365|gb|EEF60818.1| NADH-quinone oxidoreductase, chain I [bacterium Ellin514] Length = 182 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 50/167 (29%), Positives = 88/167 (52%), Gaps = 13/167 (7%) Query: 1 MRIFRCNVSFL---FLKEFVGAFFLCLRYFFK-----AKTTINYPFEKGSTSPRFRGEHA 52 M + R +SF +L G + R+F + T+ YP +K + P +RG Sbjct: 1 MIVKREKLSFWERLYLPALWGGLKVTGRHFRRTLFQGKTVTMEYPEQKWTVPPGYRGAPY 60 Query: 53 LRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRRTVRYDIDMIKCIYCG 107 L + +C++C+LCE +CP +AI I E P+ + + ++I+M++CI+CG Sbjct: 61 LVKDQEDRTKCVSCQLCEFVCPPKAIKIIPPGTEGDPKVGNVEKAPKEFEINMLRCIFCG 120 Query: 108 LCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVR 154 CQE CP +AI ++ +R+E+ Y+KE+LL+ G + +I + Sbjct: 121 FCQEVCPEEAIFLMKDYSLTGTSRKEMIYNKEKLLSLGGIHQDKIQK 167 >gi|238763933|ref|ZP_04624890.1| NADH-quinone oxidoreductase subunit I [Yersinia kristensenii ATCC 33638] gi|238784993|ref|ZP_04628991.1| NADH-quinone oxidoreductase subunit I [Yersinia bercovieri ATCC 43970] gi|238697901|gb|EEP90661.1| NADH-quinone oxidoreductase subunit I [Yersinia kristensenii ATCC 33638] gi|238714109|gb|EEQ06123.1| NADH-quinone oxidoreductase subunit I [Yersinia bercovieri ATCC 43970] Length = 180 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 56/142 (39%), Positives = 75/142 (52%), Gaps = 8/142 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LKE V F +R + F + T YP E PR+RG L R P+GEERC Sbjct: 1 MTLKELVVGFGTQVRSLWMIGLHAFHKRETQMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC CP I+++ G + I+ +CI+CGLC+EACP AI P+ Sbjct: 61 VACNLCAVACPVGCISLQKAEHKD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119 Query: 124 FEFATETRQELYYDKERLLNNG 145 FE RQ+L Y+KE LL +G Sbjct: 120 FEMGEFKRQDLVYEKEDLLISG 141 >gi|148260117|ref|YP_001234244.1| NADH-quinone oxidoreductase, chain I [Acidiphilium cryptum JF-5] gi|146401798|gb|ABQ30325.1| NADH dehydrogenase subunit I [Acidiphilium cryptum JF-5] Length = 170 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 48/126 (38%), Positives = 70/126 (55%), Gaps = 2/126 (1%) Query: 20 FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79 + + F+ T++YP E +PR+RG L R P+GEERC++C LC CP I+ Sbjct: 8 LWYTFLHLFQRNVTVSYPDEMPYLAPRYRGRIVLTRDPDGEERCVSCYLCAVACPVDCIS 67 Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139 ++ G + I+ +CI+CG C+EACP AI P+FE + RQ L Y+KE Sbjct: 68 LQKTEAE--GRWYPEFFRINFSRCIFCGFCEEACPTYAIQLTPDFEMSEYDRQNLVYEKE 125 Query: 140 RLLNNG 145 LL +G Sbjct: 126 HLLISG 131 >gi|332162382|ref|YP_004298959.1| NADH dehydrogenase subunit I [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318606461|emb|CBY27959.1| NADH-ubiquinone oxidoreductase chain I [Yersinia enterocolitica subsp. palearctica Y11] gi|325666612|gb|ADZ43256.1| NADH dehydrogenase subunit I [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 180 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 56/142 (39%), Positives = 75/142 (52%), Gaps = 8/142 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LKE V F +R + F + T YP E PR+RG L R P+GEERC Sbjct: 1 MTLKELVVGFGTQVRSLWMIGLHAFHKRETQMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC CP I+++ G + I+ +CI+CGLC+EACP AI P+ Sbjct: 61 VACNLCAVACPVGCISLQKAEHKD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119 Query: 124 FEFATETRQELYYDKERLLNNG 145 FE RQ+L Y+KE LL +G Sbjct: 120 FEMGEFKRQDLVYEKEDLLISG 141 >gi|123441683|ref|YP_001005667.1| NADH dehydrogenase subunit I [Yersinia enterocolitica subsp. enterocolitica 8081] gi|156633543|sp|A1JLI2|NUOI_YERE8 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|122088644|emb|CAL11439.1| NADH Dehydrogenase I chain I [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 180 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 56/142 (39%), Positives = 75/142 (52%), Gaps = 8/142 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LKE V F +R + F + T YP E PR+RG L R P+GEERC Sbjct: 1 MTLKELVVGFGTQVRSLWMIGLHAFHKRETQMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC CP I+++ G + I+ +CI+CGLC+EACP AI P+ Sbjct: 61 VACNLCAVACPVGCISLQKAEHKD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119 Query: 124 FEFATETRQELYYDKERLLNNG 145 FE RQ+L Y+KE LL +G Sbjct: 120 FEMGEFKRQDLVYEKEDLLISG 141 >gi|304413378|ref|ZP_07394851.1| NADH:ubiquinone oxidoreductase, chain I [Candidatus Regiella insecticola LSR1] gi|304284221|gb|EFL92614.1| NADH:ubiquinone oxidoreductase, chain I [Candidatus Regiella insecticola LSR1] Length = 183 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 56/143 (39%), Positives = 78/143 (54%), Gaps = 8/143 (5%) Query: 10 FLFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 + LKE + F +R + F + T YP E PR+RG L R P+G+ER Sbjct: 3 TMTLKELIIGFGTQIRSLWLMALHAFHPRETKMYPEEPVYLPPRYRGRIVLTRDPDGQER 62 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+AC LC A+CP I+++ DG + I+ +CI+CGLC+EACP AI P Sbjct: 63 CVACNLCAAVCPVDCISLQKAE-TKDGRWYPEFFRINFSRCIFCGLCEEACPTLAIQLTP 121 Query: 123 NFEFATETRQELYYDKERLLNNG 145 +FE RQ+L Y+KE LL +G Sbjct: 122 DFEMGEFKRQDLVYEKEDLLISG 144 >gi|15806509|ref|NP_295220.1| NADH dehydrogenase I subunit I [Deinococcus radiodurans R1] gi|81789326|sp|Q9RU95|NUOI_DEIRA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|6459254|gb|AAF11060.1|AE001993_10 NADH dehydrogenase I, I subunit [Deinococcus radiodurans R1] Length = 178 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 57/157 (36%), Positives = 82/157 (52%), Gaps = 10/157 (6%) Query: 15 EFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPN-GEERCIACKLCEAIC 73 + + L F+ T++YP ++ + PRFRG H L R+P+ G E+CI C LC A C Sbjct: 5 DIAKGMGVTLGKLFQKPLTVSYPEQRATLQPRFRGRHVLTRHPDTGLEKCIGCSLCAAAC 64 Query: 74 PAQAITIESGPRCH-----DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 PA AI +E+ G R Y+I+M++CI+CGLC+EACP A+V G FE A Sbjct: 65 PAYAIYVEAAENDPRDPVSPGERYAKVYEINMLRCIFCGLCEEACPTGAVVLGNEFEMAD 124 Query: 129 ETRQELYYDKERLLNN--GDRWESEIVRNIVTDSPYR 163 ++ Y KE +L G R + + P R Sbjct: 125 YRSRDFVYGKEDMLVGVTGSRPQRREA--LSAGRPVR 159 >gi|256422828|ref|YP_003123481.1| NADH-quinone oxidoreductase, chain I [Chitinophaga pinensis DSM 2588] gi|256037736|gb|ACU61280.1| NADH-quinone oxidoreductase, chain I [Chitinophaga pinensis DSM 2588] Length = 171 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 51/128 (39%), Positives = 73/128 (57%), Gaps = 1/128 (0%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + +L + F + TI YP EK + PR+RG L + P+G ERC+ C LC A CP Sbjct: 5 LRTMWLVFLHLFHKRETIQYPEEKVALRPRWRGRIVLTKDPDGGERCVGCYLCAAACPVD 64 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 I +++ +G R + I+ +CI+CG C+EACP AI P+FE A RQ+L Y Sbjct: 65 CIALQATED-ENGRRYPEFFRINFSRCIFCGYCEEACPTYAIQLTPDFEMAEYRRQDLVY 123 Query: 137 DKERLLNN 144 +KE LL + Sbjct: 124 EKEDLLID 131 >gi|326402930|ref|YP_004283011.1| NADH-quinone oxidoreductase subunit I [Acidiphilium multivorum AIU301] gi|325049791|dbj|BAJ80129.1| NADH-quinone oxidoreductase subunit I [Acidiphilium multivorum AIU301] Length = 170 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 48/126 (38%), Positives = 70/126 (55%), Gaps = 2/126 (1%) Query: 20 FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79 + + F+ T++YP E +PR+RG L R P+GEERC++C LC CP I+ Sbjct: 8 LWYTFLHLFQRNVTVSYPDEMPYLAPRYRGRIVLTRDPDGEERCVSCYLCAVACPVDCIS 67 Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139 ++ G + I+ +CI+CG C+EACP AI P+FE + RQ L Y+KE Sbjct: 68 LQKTEAE--GRWYPEFFRINFSRCIFCGFCEEACPTYAIQLTPDFEMSEYDRQNLVYEKE 125 Query: 140 RLLNNG 145 LL +G Sbjct: 126 HLLISG 131 >gi|330830052|ref|YP_004393004.1| NADH-quinone oxidoreductase subunit I [Aeromonas veronii B565] gi|328805188|gb|AEB50387.1| NADH-quinone oxidoreductase subunit I [Aeromonas veronii B565] Length = 180 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 50/129 (38%), Positives = 76/129 (58%), Gaps = 1/129 (0%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + + + + ++ + T+NYP + +PR+RG L R P+G+ERC+AC LC CP Sbjct: 14 LRSLAMVFSHAWRPRETLNYPEQAVYAAPRYRGRIVLTRDPDGDERCVACNLCAVACPVG 73 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 I+++ R DG + I+ +CI+CGLC+EACP AI P+FE RQ+L Y Sbjct: 74 CISLQKSER-EDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDFEMGEYRRQDLVY 132 Query: 137 DKERLLNNG 145 +KE LL +G Sbjct: 133 EKEDLLISG 141 >gi|183599629|ref|ZP_02961122.1| hypothetical protein PROSTU_03116 [Providencia stuartii ATCC 25827] gi|188021881|gb|EDU59921.1| hypothetical protein PROSTU_03116 [Providencia stuartii ATCC 25827] Length = 180 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 54/142 (38%), Positives = 77/142 (54%), Gaps = 8/142 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LK+ + F +R + F+ + T YP E PR+RG L R P+GEERC Sbjct: 1 MTLKDLLVGFGTQVRSIWLVGLHAFQKRETQMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC CP I+++ DG + I+ +CI+CGLC+EACP AI P+ Sbjct: 61 VACNLCAVACPVGCISLQKAE-HEDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119 Query: 124 FEFATETRQELYYDKERLLNNG 145 FE RQ+L Y+K+ LL +G Sbjct: 120 FEMGEWRRQDLVYEKDHLLISG 141 >gi|302523885|ref|ZP_07276227.1| NADH-plastoquinone oxidoreductase, I subunit [Streptomyces sp. AA4] gi|302432780|gb|EFL04596.1| NADH-plastoquinone oxidoreductase, I subunit [Streptomyces sp. AA4] Length = 192 Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 50/132 (37%), Positives = 67/132 (50%), Gaps = 5/132 (3%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + F + FK T YP +PR+ G H L R+P+G E+C+ C+LC CPA Sbjct: 22 IKGFGVTFGMMFKKVATEEYPEAGAPAAPRYHGRHQLNRHPDGLEKCVGCELCAWACPAD 81 Query: 77 AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E R G R Y I+ ++CI CGLC EACP ++ +E A + R Sbjct: 82 AIFVEGGNNTDEERYSPGERYGADYQINYLRCIGCGLCIEACPTRSLTMTNFYELADDDR 141 Query: 132 QELYYDKERLLN 143 Q L Y KE LL Sbjct: 142 QRLIYTKEDLLA 153 >gi|303248406|ref|ZP_07334666.1| NADH-quinone oxidoreductase, chain I [Desulfovibrio fructosovorans JJ] gi|302490204|gb|EFL50122.1| NADH-quinone oxidoreductase, chain I [Desulfovibrio fructosovorans JJ] Length = 187 Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 52/131 (39%), Positives = 72/131 (54%), Gaps = 1/131 (0%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 +G++ L + F+ T YP K R RG L R P+G+ERC+AC LC C Sbjct: 19 TGIIGSYAATLTHLFRKPVTEQYPEYKRPMPARTRGRIILTRSPDGKERCVACYLCSGAC 78 Query: 74 PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 P I+++S DG RR + I+ +CIYCGLC+EACP AI P F F+ ++ + Sbjct: 79 PVNCISMQSEE-GPDGRRRAAWFRINFARCIYCGLCEEACPTLAIQLTPEFAFSKDSIEA 137 Query: 134 LYYDKERLLNN 144 Y+KE LL N Sbjct: 138 FVYEKEDLLVN 148 >gi|227494511|ref|ZP_03924827.1| NADH dehydrogenase (quinone) [Actinomyces coleocanis DSM 15436] gi|226832245|gb|EEH64628.1| NADH dehydrogenase (quinone) [Actinomyces coleocanis DSM 15436] Length = 222 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 51/144 (35%), Positives = 72/144 (50%), Gaps = 8/144 (5%) Query: 12 FLKEFVG---AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKL 68 FL E + + + FF+ T YPFE PRF G H L RY +G E+CI C+L Sbjct: 19 FLGELFAPVAGYGVTITSFFRPTVTEQYPFEGPYVMPRFHGRHQLNRYADGLEKCIGCEL 78 Query: 69 CEAICPAQAI-----TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 C CPA AI + G R Y ++ ++CI+CGLC EACP A+ + Sbjct: 79 CAWACPADAILVEAANNTPEAQYAPGERYGRVYQVNYLRCIFCGLCMEACPTRALTMSTD 138 Query: 124 FEFATETRQELYYDKERLLNNGDR 147 FE A R +L ++K ++L + Sbjct: 139 FELADYKRADLIFEKPQILAPLEE 162 >gi|225679000|gb|EEH17284.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Paracoccidioides brasiliensis Pb03] Length = 213 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 78/117 (66%), Positives = 88/117 (75%), Gaps = 1/117 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + + E + ++ L FF+ TI YPFEKG SPRFRGEHALRRYP+GEERC Sbjct: 71 LDKAGKYFLMTEMLRGMYVVLEQFFRPPYTIFYPFEKGPISPRFRGEHALRRYPSGEERC 130 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 IACKLCEAICPAQAITIE+ R DG+RRT RYDIDM KCIYCG CQE+CPVDAIVE Sbjct: 131 IACKLCEAICPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQESCPVDAIVE 186 >gi|253698808|ref|YP_003019997.1| NADH dehydrogenase subunit I [Geobacter sp. M21] gi|251773658|gb|ACT16239.1| NADH-quinone oxidoreductase, chain I [Geobacter sp. M21] Length = 176 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 45/133 (33%), Positives = 68/133 (51%), Gaps = 1/133 (0%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 +KE + + + ++ T+ +P E+ PRFRG L R P+G ERC+AC LC Sbjct: 7 IKEILTGLSITFSHIWRKPVTVQFPEEQRPMPPRFRGSIVLTRDPDGAERCVACYLCSGA 66 Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 CP I++ + +G R + I+ +CI CG+C EACP AI P Sbjct: 67 CPVDCISMAAAE-GENGRRYAAWFRINFSRCILCGMCAEACPTLAIQMSPKMFRCKRQVM 125 Query: 133 ELYYDKERLLNNG 145 ++ Y+KE LL +G Sbjct: 126 DMVYEKEDLLIDG 138 >gi|21672444|ref|NP_660511.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|25008868|sp|Q8K9Y0|NUOI_BUCAP RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|21623057|gb|AAM67722.1| NADH dehydrogenase I chain I [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 180 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 54/162 (33%), Positives = 81/162 (50%), Gaps = 11/162 (6%) Query: 8 VSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACK 67 + FL + + + F T YP EK SPR+RG L R +G ERC+AC Sbjct: 6 IIIGFLLQIRSILMV-FKNIFSKSETKMYPEEKLYLSPRYRGRVILTRNIDGGERCVACN 64 Query: 68 LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 LC +CP I+++ + +G + I+ +CI+CGLC+EACP AI P+FE + Sbjct: 65 LCAVVCPVDCISLQKSEK-KNGRWYPKFFRINFSRCIFCGLCEEACPTAAIQLMPDFELS 123 Query: 128 TETRQELYYDKERLLNNGD---------RWESEIVRNIVTDS 160 RQ L Y+KE LL +G R+ ++++ D Sbjct: 124 DFNRQNLVYEKEDLLISGPGKYPDYDFYRFSGVVIKDKKVDK 165 >gi|317123853|ref|YP_004097965.1| NADH dehydrogenase subunit I [Intrasporangium calvum DSM 43043] gi|315587941|gb|ADU47238.1| NADH dehydrogenase subunit I [Intrasporangium calvum DSM 43043] Length = 250 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 49/139 (35%), Positives = 68/139 (48%), Gaps = 12/139 (8%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V F + F+ T YP + T PRF G H L R+ +G E+C+ C+LC CPA Sbjct: 25 VAGFGVSFSTMFRKVATEEYPEKPRPTQPRFHGRHQLNRHADGLEKCVGCELCAWACPAD 84 Query: 77 AITIESGP------------RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 AI +E R G R Y I+ ++CI+CGLC EACP A+ + Sbjct: 85 AILVEGADNDDTPLEQGGKGRFSPGERYGRVYQINYLRCIFCGLCIEACPTRALTMTNFY 144 Query: 125 EFATETRQELYYDKERLLN 143 E A R +L + K++LL Sbjct: 145 ELADNDRGKLIFTKDQLLA 163 >gi|238753747|ref|ZP_04615108.1| NADH-quinone oxidoreductase subunit I [Yersinia ruckeri ATCC 29473] gi|238707983|gb|EEQ00340.1| NADH-quinone oxidoreductase subunit I [Yersinia ruckeri ATCC 29473] Length = 180 Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats. Identities = 55/142 (38%), Positives = 75/142 (52%), Gaps = 8/142 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LKE V F +R + F + T YP E PR+RG L R P+GEERC Sbjct: 1 MTLKELVVGFGTQVRSLWMIGLHAFHKRETQMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC CP I+++ G + ++ +CI+CGLC+EACP AI P+ Sbjct: 61 VACNLCAVACPVGCISLQKAEHQD-GRWYPEFFRVNFSRCIFCGLCEEACPTTAIQLTPD 119 Query: 124 FEFATETRQELYYDKERLLNNG 145 FE RQ+L Y+KE LL +G Sbjct: 120 FEMGEFKRQDLVYEKEDLLISG 141 >gi|302035618|ref|YP_003795940.1| NADH-quinone oxidoreductase subunit I [Candidatus Nitrospira defluvii] gi|300603682|emb|CBK40013.1| NADH-quinone oxidoreductase, subunit I (modular protein) [Candidatus Nitrospira defluvii] Length = 202 Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats. Identities = 47/145 (32%), Positives = 74/145 (51%), Gaps = 1/145 (0%) Query: 5 RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64 + + E A + ++ F T YP E+ + RG L RY +G +RC+ Sbjct: 15 KKILQAALFYEIWDAMKVTFKHMFHRPITFQYPREQRTIPDGHRGALGLLRYGDGRDRCV 74 Query: 65 ACKLCEAICPAQAITIESGPRCHDG-TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 C LCEA CP++ I + S R + ID+ KC++CG C EACPV+A+ Sbjct: 75 GCDLCEAACPSRCIKVISQEDPERPLQRFASEFYIDITKCVFCGYCVEACPVNALAMTKM 134 Query: 124 FEFATETRQELYYDKERLLNNGDRW 148 +E++T ++ L +DK+RL G+R Sbjct: 135 YEYSTHDKRTLLFDKKRLYEVGERH 159 >gi|24372600|ref|NP_716642.1| NADH dehydrogenase subunit I [Shewanella oneidensis MR-1] gi|81744862|sp|Q8EI36|NUOI_SHEON RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|24346625|gb|AAN54087.1|AE015546_4 NADH dehydrogenase I, I subunit [Shewanella oneidensis MR-1] Length = 180 Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats. Identities = 50/129 (38%), Positives = 74/129 (57%), Gaps = 1/129 (0%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + + + + + + T+NYP E +PR+RG L R P+G+ERC+AC LC CP Sbjct: 14 LRSLSMVFSHAWHPRETLNYPEEAVYAAPRYRGRIVLTRDPDGDERCVACNLCAVACPVG 73 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 I+++ R G + I+ +CI+CGLC+EACP AI P+FE RQ+L Y Sbjct: 74 CISLQKSERDD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDFEMGEYRRQDLVY 132 Query: 137 DKERLLNNG 145 +KE LL +G Sbjct: 133 EKEDLLISG 141 >gi|301058593|ref|ZP_07199598.1| NADH-quinone oxidoreductase subunit I [delta proteobacterium NaphS2] gi|300447325|gb|EFK11085.1| NADH-quinone oxidoreductase subunit I [delta proteobacterium NaphS2] Length = 171 Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats. Identities = 52/133 (39%), Positives = 74/133 (55%), Gaps = 1/133 (0%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + + + L + + + T+ YP ++ T PRFRG L R P+G ERC+AC LC A+ Sbjct: 1 MFSILRSIALIFTHAIRPRETVQYPEKRPYTPPRFRGRIVLTRDPDGAERCVACYLCSAV 60 Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 CP I ++ G DG + I+ +CIYCG C+EACP AI P+FE R Sbjct: 61 CPTDCIAVQ-GAVAEDGRHYAASFRINFARCIYCGFCEEACPTLAIQLSPDFEMGEYNRH 119 Query: 133 ELYYDKERLLNNG 145 +L Y+KE LL +G Sbjct: 120 DLVYEKEDLLISG 132 >gi|53804530|ref|YP_113813.1| NADH dehydrogenase subunit I [Methylococcus capsulatus str. Bath] gi|81682188|sp|Q608Y4|NUOI_METCA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|53758291|gb|AAU92582.1| NADH dehydrogenase I, I subunit [Methylococcus capsulatus str. Bath] Length = 171 Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats. Identities = 50/129 (38%), Positives = 71/129 (55%), Gaps = 1/129 (0%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + ++ L++ F T+ YP ++ PR+RG L R P+GEERC+AC LC A+CP Sbjct: 5 LRTLWIVLKHTFSRADTVQYPEQRPKLYPRYRGRIVLTRDPDGEERCVACNLCAAVCPVD 64 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 I ++ G + I+ +CI CGLC+EACP AI P+FE R+ L Y Sbjct: 65 CIALQKTEDVD-GRWYPEFFRINFSRCILCGLCEEACPTYAIQLTPDFELCEYDRRNLVY 123 Query: 137 DKERLLNNG 145 +KE LL G Sbjct: 124 EKEHLLIQG 132 >gi|146312467|ref|YP_001177541.1| NADH dehydrogenase subunit I [Enterobacter sp. 638] gi|145319343|gb|ABP61490.1| NADH dehydrogenase subunit I [Enterobacter sp. 638] Length = 180 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 55/142 (38%), Positives = 75/142 (52%), Gaps = 8/142 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LKE + +R + F + T YP E PR+RG L R P+GEERC Sbjct: 1 MTLKELLVGAGTQIRSIWMIGLHAFAKRETQMYPEEPVYLPPRYRGRIVLSRDPDGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC CP I+++ DG + I+ +CI+CGLC+EACP AI P+ Sbjct: 61 VACNLCAVACPVGCISLQKAE-TKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119 Query: 124 FEFATETRQELYYDKERLLNNG 145 FE RQ+L Y+KE LL +G Sbjct: 120 FEMGEYKRQDLVYEKEDLLISG 141 >gi|37526970|ref|NP_930314.1| NADH dehydrogenase subunit I [Photorhabdus luminescens subsp. laumondii TTO1] gi|81707635|sp|Q7N2J4|NUOI_PHOLL RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|36786403|emb|CAE15456.1| NADH dehydrogenase I chain I (NADH-ubiquinone oxidoreductase chain 9) (NUO9) [Photorhabdus luminescens subsp. laumondii TTO1] Length = 180 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 57/142 (40%), Positives = 77/142 (54%), Gaps = 8/142 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LKE V F +R + F + T YP E PR+RG L R P+GEERC Sbjct: 1 MTLKELVVGFATQVRSIWMIGLHAFHKRETQMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC A+CP I+++ DG + I+ +CI+CGLC+EACP AI P+ Sbjct: 61 VACNLCAAVCPVGCISLQKAE-HEDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119 Query: 124 FEFATETRQELYYDKERLLNNG 145 FE RQ+L Y+KE L +G Sbjct: 120 FEMGEFKRQDLVYEKEELTISG 141 >gi|300723697|ref|YP_003713004.1| NADH dehydrogenase I subunit I, 2Fe-2S ferredoxin-related [Xenorhabdus nematophila ATCC 19061] gi|297630221|emb|CBJ90872.1| NADH dehydrogenase I chain I, 2Fe-2S ferredoxin-related [Xenorhabdus nematophila ATCC 19061] Length = 180 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 56/142 (39%), Positives = 77/142 (54%), Gaps = 8/142 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LKE V F +R + F + T YP E PR+RG L R P+GEERC Sbjct: 1 MTLKELVVGFATQVRSIWMIGLHAFHKRETKMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC A+CP I+++ G + ++ +CI+CGLC+EACP AI P+ Sbjct: 61 VACNLCAAVCPVGCISLQKAEHKD-GRWYPEFFRVNFSRCIFCGLCEEACPTTAIQLTPD 119 Query: 124 FEFATETRQELYYDKERLLNNG 145 FE RQ+L Y+KE LL +G Sbjct: 120 FELGEFKRQDLVYEKEDLLISG 141 >gi|227112320|ref|ZP_03825976.1| NADH dehydrogenase subunit I [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227326159|ref|ZP_03830183.1| NADH dehydrogenase subunit I [Pectobacterium carotovorum subsp. carotovorum WPP14] gi|261820799|ref|YP_003258905.1| NADH dehydrogenase subunit I [Pectobacterium wasabiae WPP163] gi|261604812|gb|ACX87298.1| NADH-quinone oxidoreductase, chain I [Pectobacterium wasabiae WPP163] Length = 180 Score = 124 bits (310), Expect = 5e-27, Method: Composition-based stats. Identities = 56/142 (39%), Positives = 76/142 (53%), Gaps = 8/142 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LKE V F +R FK + T YP E + PR+RG L R P+GEERC Sbjct: 1 MTLKELVVGFGTQIRSICMVGSNAFKKRETRMYPEEPVNPPPRYRGRIVLTRDPDGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC CP I+++ DG + ++ +CI+CG C+EACP AI P+ Sbjct: 61 VACNLCAVACPVGCISLQKAE-TKDGRWYPEFFRVNFSRCIFCGFCEEACPTTAIQLTPD 119 Query: 124 FEFATETRQELYYDKERLLNNG 145 FE RQ+L Y+KE LL +G Sbjct: 120 FEMGDYKRQDLVYEKEDLLISG 141 >gi|261346150|ref|ZP_05973794.1| NADH-quinone oxidoreductase subunit I [Providencia rustigianii DSM 4541] gi|282565803|gb|EFB71338.1| NADH-quinone oxidoreductase subunit I [Providencia rustigianii DSM 4541] Length = 180 Score = 124 bits (310), Expect = 5e-27, Method: Composition-based stats. Identities = 55/142 (38%), Positives = 76/142 (53%), Gaps = 8/142 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LKE + F +R + F + T YP E PR+RG L R P+GEERC Sbjct: 1 MTLKELLVGFATQVRSIWMVGLHAFDKRETQMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC CP I+++ DG + ++ +CI+CGLC+EACP AI P+ Sbjct: 61 VACNLCAVACPVGCISLQKAE-HEDGRWYPEFFRVNFSRCIFCGLCEEACPTTAIQLTPD 119 Query: 124 FEFATETRQELYYDKERLLNNG 145 FE A RQ+L Y+K LL +G Sbjct: 120 FEMADWRRQDLVYEKNDLLISG 141 >gi|51892732|ref|YP_075423.1| NADH dehydrogenase I subunit I [Symbiobacterium thermophilum IAM 14863] gi|81692101|sp|Q67P14|NUOI1_SYMTH RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName: Full=NADH dehydrogenase I subunit I 1; AltName: Full=NDH-1 subunit I 1 gi|51856421|dbj|BAD40579.1| NADH dehydrogenase I subunit I [Symbiobacterium thermophilum IAM 14863] Length = 162 Score = 124 bits (310), Expect = 5e-27, Method: Composition-based stats. Identities = 51/131 (38%), Positives = 74/131 (56%), Gaps = 5/131 (3%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 L+ F+ T++YP+ K +PRFRG H LR Y NG E C+ C+LC+ CPA Sbjct: 7 IAKGMATTLKVLFRKPVTVDYPYVKRPRAPRFRGRHELRTYENGLEMCVGCELCQVACPA 66 Query: 76 QAITIESGPRCH-----DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 AIT+++ G R +Y +D+++CI+CG+C+EACP D + FE A T Sbjct: 67 AAITVQAAENDPDNPHSPGERYGYKYQVDLLRCIFCGMCEEACPTDCLHLTQEFELADFT 126 Query: 131 RQELYYDKERL 141 R+ L KE+L Sbjct: 127 RESLILQKEQL 137 >gi|77917827|ref|YP_355642.1| NADH dehydrogenase subunit I [Pelobacter carbinolicus DSM 2380] gi|110287764|sp|Q3A820|NUOI_PELCD RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|77543910|gb|ABA87472.1| NADH dehydrogenase subunit I [Pelobacter carbinolicus DSM 2380] Length = 176 Score = 124 bits (310), Expect = 6e-27, Method: Composition-based stats. Identities = 54/145 (37%), Positives = 82/145 (56%), Gaps = 7/145 (4%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M +++ + F++ LRY F+ T+ YP K + +PR+RG L R P+GE Sbjct: 1 MSLWKDIKGTIL------PFWVTLRYLFRRPVTVCYPERKQTPAPRYRGRLVLTRDPDGE 54 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERC+AC LC A CP I++++ R DG R + I+ +CI+CGLC EACP A+ Sbjct: 55 ERCVACHLCSAACPVDCISMQAAER-EDGRRYAAWFRINFSRCIFCGLCTEACPTLALQM 113 Query: 121 GPNFEFATETRQELYYDKERLLNNG 145 +E AT ++ Y+K+ LL +G Sbjct: 114 TSEYELATRELLQVIYEKDELLIDG 138 >gi|253689141|ref|YP_003018331.1| NADH-quinone oxidoreductase, chain I [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251755719|gb|ACT13795.1| NADH-quinone oxidoreductase, chain I [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 180 Score = 124 bits (310), Expect = 6e-27, Method: Composition-based stats. Identities = 55/142 (38%), Positives = 76/142 (53%), Gaps = 8/142 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LK+ V F +R FK + T YP E + PR+RG L R P+GEERC Sbjct: 1 MTLKDLVVGFGTQIRSICMVGSNAFKKRETRMYPEEPVNPPPRYRGRIVLTRDPDGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC CP I+++ DG + ++ +CI+CG C+EACP AI P+ Sbjct: 61 VACNLCAVACPVGCISLQKAE-TKDGRWYPEFFRVNFSRCIFCGFCEEACPTTAIQLTPD 119 Query: 124 FEFATETRQELYYDKERLLNNG 145 FE RQ+L Y+KE LL +G Sbjct: 120 FEMGDYKRQDLVYEKEDLLISG 141 >gi|312890388|ref|ZP_07749925.1| NADH dehydrogenase subunit I [Mucilaginibacter paludis DSM 18603] gi|311297158|gb|EFQ74290.1| NADH dehydrogenase subunit I [Mucilaginibacter paludis DSM 18603] Length = 165 Score = 124 bits (310), Expect = 6e-27, Method: Composition-based stats. Identities = 50/138 (36%), Positives = 77/138 (55%), Gaps = 6/138 (4%) Query: 12 FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71 +L + + ++FF+ TI+YP EK S FRG H+L+R G ERC AC LC Sbjct: 23 YLPAILSGLRITGKHFFRKPVTISYPDEKREFSENFRGMHSLKRDEEGRERCTACGLCAL 82 Query: 72 ICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CPA+AIT+ + R + Y+I+M++CI+CGLC+EACP +AI + Sbjct: 83 SCPAEAITMIAAERQKGEEKLYREEKYAAVYEINMLRCIFCGLCEEACPKEAIYLDGDIV 142 Query: 126 FATETRQELYYDKERLLN 143 + R++ Y K++L+ Sbjct: 143 PSNYLRKDFIYGKDKLVE 160 >gi|212712283|ref|ZP_03320411.1| hypothetical protein PROVALCAL_03369 [Providencia alcalifaciens DSM 30120] gi|268591142|ref|ZP_06125363.1| NADH-quinone oxidoreductase subunit I [Providencia rettgeri DSM 1131] gi|212685029|gb|EEB44557.1| hypothetical protein PROVALCAL_03369 [Providencia alcalifaciens DSM 30120] gi|291313368|gb|EFE53821.1| NADH-quinone oxidoreductase subunit I [Providencia rettgeri DSM 1131] Length = 180 Score = 124 bits (310), Expect = 6e-27, Method: Composition-based stats. Identities = 55/142 (38%), Positives = 76/142 (53%), Gaps = 8/142 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LKE + F +R + F + T YP E PR+RG L R P+GEERC Sbjct: 1 MTLKELLVGFATQVRSIWMVGLHAFDKRETQMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC CP I+++ DG + ++ +CI+CGLC+EACP AI P+ Sbjct: 61 VACNLCAVACPVGCISLQKAE-HEDGRWYPEFFRVNFSRCIFCGLCEEACPTTAIQLTPD 119 Query: 124 FEFATETRQELYYDKERLLNNG 145 FE A RQ+L Y+K LL +G Sbjct: 120 FEMADWRRQDLVYEKNDLLISG 141 >gi|253989007|ref|YP_003040363.1| NADH dehydrogenase subunit I [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253780457|emb|CAQ83619.1| NADH-quinone oxidoreductase subunit I [Photorhabdus asymbiotica] Length = 180 Score = 123 bits (309), Expect = 6e-27, Method: Composition-based stats. Identities = 55/142 (38%), Positives = 76/142 (53%), Gaps = 8/142 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LKE V F +R + F + T YP E PR+RG L R P+GEERC Sbjct: 1 MTLKELVVGFATQVRSIWMIGLHAFHKRETQMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC A+CP I+++ G + I+ +CI+CGLC+EACP AI P+ Sbjct: 61 VACNLCAAVCPVGCISLQKAEHKD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119 Query: 124 FEFATETRQELYYDKERLLNNG 145 FE RQ+L Y+K+ L +G Sbjct: 120 FEMGEFKRQDLVYEKDDLTISG 141 >gi|308232352|ref|ZP_07664062.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis SUMu001] gi|308370163|ref|ZP_07666876.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis SUMu002] gi|308371248|ref|ZP_07667119.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis SUMu003] gi|308372440|ref|ZP_07667380.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis SUMu004] gi|308373654|ref|ZP_07667623.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis SUMu005] gi|308374789|ref|ZP_07667864.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis SUMu006] gi|308376003|ref|ZP_07668165.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis SUMu007] gi|308377236|ref|ZP_07668465.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis SUMu008] gi|308378204|ref|ZP_07668688.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis SUMu009] gi|308379423|ref|ZP_07668963.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis SUMu010] gi|308380586|ref|ZP_07669224.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis SUMu011] gi|308406063|ref|ZP_07669499.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis SUMu012] gi|308214182|gb|EFO73581.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis SUMu001] gi|308324956|gb|EFP13807.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis SUMu002] gi|308329373|gb|EFP18224.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis SUMu003] gi|308333202|gb|EFP22053.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis SUMu004] gi|308336692|gb|EFP25543.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis SUMu005] gi|308340533|gb|EFP29384.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis SUMu006] gi|308344472|gb|EFP33323.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis SUMu007] gi|308348468|gb|EFP37319.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis SUMu008] gi|308353098|gb|EFP41949.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis SUMu009] gi|308357071|gb|EFP45922.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis SUMu010] gi|308361026|gb|EFP49877.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis SUMu011] gi|308364634|gb|EFP53485.1| NADH dehydrogenase subunit I I nuoI [Mycobacterium tuberculosis SUMu012] gi|323718242|gb|EGB27422.1| NADH dehydrogenase I subunit I nuoI [Mycobacterium tuberculosis CDC1551A] Length = 167 Score = 123 bits (309), Expect = 6e-27, Method: Composition-based stats. Identities = 51/122 (41%), Positives = 67/122 (54%), Gaps = 5/122 (4%) Query: 27 FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE----- 81 FK T YP G + R+ G H L RYP+G E+CI C+LC CPA AI +E Sbjct: 1 MFKKTVTEEYPERPGPVAARYHGRHQLNRYPDGLEKCIGCELCAWACPADAIYVEGADNT 60 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERL 141 R G R Y I+ ++CI CGLC EACP A+ ++E A + R +L Y+K+RL Sbjct: 61 EEERFSPGERYGRVYQINYLRCIGCGLCIEACPTRALTMTYDYELADDNRADLIYEKDRL 120 Query: 142 LN 143 L Sbjct: 121 LA 122 >gi|50121944|ref|YP_051111.1| NADH dehydrogenase subunit I [Pectobacterium atrosepticum SCRI1043] gi|81693182|sp|Q6D2S4|NUOI_ERWCT RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|49612470|emb|CAG75920.1| NADH-quinone oxidoreductase chain I [Pectobacterium atrosepticum SCRI1043] Length = 180 Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats. Identities = 56/142 (39%), Positives = 76/142 (53%), Gaps = 8/142 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LKE V F +R FK + T YP E + PR+RG L R P+GEERC Sbjct: 1 MTLKELVVGFGTQIRSICMVGSNAFKKRETRMYPEEPVNPPPRYRGRIVLTRDPDGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC CP I+++ DG + ++ +CI+CG C+EACP AI P+ Sbjct: 61 VACNLCAVACPVGCISLQKAE-TKDGRWYPEFFRVNFSRCIFCGFCEEACPTTAIQLTPD 119 Query: 124 FEFATETRQELYYDKERLLNNG 145 FE RQ+L Y+KE LL +G Sbjct: 120 FEMGEYKRQDLVYEKEDLLISG 141 >gi|226327874|ref|ZP_03803392.1| hypothetical protein PROPEN_01755 [Proteus penneri ATCC 35198] gi|225203578|gb|EEG85932.1| hypothetical protein PROPEN_01755 [Proteus penneri ATCC 35198] Length = 180 Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats. Identities = 55/142 (38%), Positives = 80/142 (56%), Gaps = 8/142 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LKE + F +R + F + T YP E + +PR+RG L R P+GEERC Sbjct: 1 MTLKELLTGFGTQVRSIWMIGLHAFAKRETQMYPEEPVNVAPRYRGRIVLTRDPDGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC A+CP I+++ DG + I+ +CI+CGLC+EACP A+ P+ Sbjct: 61 VACNLCAAVCPVGCISLQKAE-HEDGRWYPEFFRINFSRCIFCGLCEEACPTTALQLTPD 119 Query: 124 FEFATETRQELYYDKERLLNNG 145 FE RQ+L Y+K+ LL +G Sbjct: 120 FEMGEFKRQDLVYEKDDLLISG 141 >gi|297570904|ref|YP_003696678.1| NADH-quinone oxidoreductase, chain I [Arcanobacterium haemolyticum DSM 20595] gi|296931251|gb|ADH92059.1| NADH-quinone oxidoreductase, chain I [Arcanobacterium haemolyticum DSM 20595] Length = 227 Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats. Identities = 47/135 (34%), Positives = 69/135 (51%), Gaps = 9/135 (6%) Query: 17 VGAFFLCLRYFFKAKTTINY----PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 V F + F+ T Y P +K PR+ G H L RY +G E+CI C+LC Sbjct: 29 VAGFGVTFSTLFRPAVTEQYLPHKPEQKTPPRPRYHGMHRLNRYADGLEKCIGCELCAWA 88 Query: 73 CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CPA AI +E G + G R Y I+ ++CI+C C +ACP A+ +E A Sbjct: 89 CPADAIYVEAASNKPGEQYSPGERYGRVYQINYLRCIFCSYCIQACPTRALTMSTEYEVA 148 Query: 128 TETRQELYYDKERLL 142 ++R+ L Y+K+ +L Sbjct: 149 DQSRESLIYEKQDIL 163 >gi|242239961|ref|YP_002988142.1| NADH dehydrogenase subunit I [Dickeya dadantii Ech703] gi|242132018|gb|ACS86320.1| NADH-quinone oxidoreductase, chain I [Dickeya dadantii Ech703] Length = 180 Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats. Identities = 55/142 (38%), Positives = 76/142 (53%), Gaps = 8/142 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LKE + F +R FK + T YP E + PRFRG L R P+G+ERC Sbjct: 1 MTLKELLIGFGTQVRSICMVGSNAFKKRETKMYPEEPVNPPPRFRGRIVLTRDPDGQERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC CP I+++ G + I+ +CI+CG+C+EACP AI P+ Sbjct: 61 VACNLCAVACPVGCISLQKAEMKD-GRWYPEFFRINFSRCIFCGMCEEACPTTAIQLTPD 119 Query: 124 FEFATETRQELYYDKERLLNNG 145 FE RQ+L Y+KE LL +G Sbjct: 120 FEMGEFKRQDLVYEKEDLLISG 141 >gi|117618050|ref|YP_856311.1| NADH dehydrogenase subunit I [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|156632700|sp|A0KJ60|NUOI_AERHH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|117559457|gb|ABK36405.1| NADH-quinone oxidoreductase chain i [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 180 Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats. Identities = 50/129 (38%), Positives = 75/129 (58%), Gaps = 1/129 (0%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + + + + + + T+NYP + +PR+RG L R P+G+ERC+AC LC CP Sbjct: 14 LRSLGMVFSHAWSPRETLNYPEQAVYAAPRYRGRIVLTRDPDGDERCVACNLCAVACPVG 73 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 I+++ R DG + I+ +CI+CGLC+EACP AI P+FE RQ+L Y Sbjct: 74 CISLQKSER-EDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDFEMGEYRRQDLVY 132 Query: 137 DKERLLNNG 145 +KE LL +G Sbjct: 133 EKEDLLISG 141 >gi|46446201|ref|YP_007566.1| NADH-ubiquinone oxidoreductase chain I [Candidatus Protochlamydia amoebophila UWE25] gi|46399842|emb|CAF23291.1| probable NADH-ubiquinone oxidoreductase chain I [Candidatus Protochlamydia amoebophila UWE25] Length = 143 Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats. Identities = 50/129 (38%), Positives = 73/129 (56%), Gaps = 5/129 (3%) Query: 20 FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79 + L++ F+ T+ YP EK R RG H L ++ +G ERC+ C+LC +CPAQAI Sbjct: 1 MIIVLKHAFQTPVTLRYPEEKRILPARSRGRHYLTKWNDGLERCVGCELCAIVCPAQAIY 60 Query: 80 -----IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134 E G G R + I+M++CI+CG C+EACP AIV +E + TR+++ Sbjct: 61 VKPAANEPGHIHSHGERYASDFQINMLRCIFCGYCEEACPTGAIVLSNQYELSAYTREDM 120 Query: 135 YYDKERLLN 143 Y K+RL Sbjct: 121 IYTKDRLTE 129 >gi|291296248|ref|YP_003507646.1| NADH-quinone oxidoreductase chain I [Meiothermus ruber DSM 1279] gi|290471207|gb|ADD28626.1| NADH-quinone oxidoreductase, chain I [Meiothermus ruber DSM 1279] Length = 177 Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats. Identities = 56/155 (36%), Positives = 79/155 (50%), Gaps = 10/155 (6%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + + + L+ F TI YP PRF G H L R+PNG E+CI C LC A Sbjct: 3 IAALAQSMGITLKALFSKPVTIPYPDAPVPLKPRFHGRHVLTRHPNGLEKCIGCSLCAAA 62 Query: 73 CPAQAITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CPA AI +E+ + G R Y+I+M++CI+CG+C+EACP A+V G +FE A Sbjct: 63 CPAYAIYVEAAENDPNNPVSAGERYARVYEINMLRCIFCGMCEEACPTGAVVMGYDFEMA 122 Query: 128 TETRQELYYDKERLLNNGDRWESEIVRNIVTDSPY 162 + Y KE +L E E + ++ Y Sbjct: 123 DYRYSDFVYGKEDMLV-----EVEGTKPQRREAAY 152 >gi|251789021|ref|YP_003003742.1| NADH dehydrogenase subunit I [Dickeya zeae Ech1591] gi|271501261|ref|YP_003334286.1| NADH-quinone oxidoreductase subunit I [Dickeya dadantii Ech586] gi|247537642|gb|ACT06263.1| NADH-quinone oxidoreductase, chain I [Dickeya zeae Ech1591] gi|270344816|gb|ACZ77581.1| NADH-quinone oxidoreductase, chain I [Dickeya dadantii Ech586] Length = 180 Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats. Identities = 55/142 (38%), Positives = 76/142 (53%), Gaps = 8/142 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LKE + F +R FK + T YP E + PRFRG L R P+G+ERC Sbjct: 1 MTLKELLIGFGTQVRSICMVGSNAFKKRETKMYPEEPVNPPPRFRGRIVLTRDPDGQERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC CP I+++ G + I+ +CI+CG+C+EACP AI P+ Sbjct: 61 VACNLCAVACPVGCISLQKAEMKD-GRWYPEFFRINFSRCIFCGMCEEACPTTAIQLTPD 119 Query: 124 FEFATETRQELYYDKERLLNNG 145 FE RQ+L Y+KE LL +G Sbjct: 120 FEMGEFKRQDLVYEKEDLLISG 141 >gi|81337046|sp|Q4QSC5|NQO9_RHOMR RecName: Full=NADH-quinone oxidoreductase subunit 9; AltName: Full=NADH dehydrogenase I subunit 9; AltName: Full=NDH-1 subunit 9 gi|66219944|gb|AAY42993.1| Nqo9 [Rhodothermus marinus] Length = 230 Score = 123 bits (309), Expect = 7e-27, Method: Composition-based stats. Identities = 46/153 (30%), Positives = 71/153 (46%), Gaps = 2/153 (1%) Query: 11 LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70 L+L V R + T YP E +RG L NG RC+AC LC Sbjct: 22 LYLPAVVQGLAYTWRKMRSPRYTFQYPDELWYPPDSYRGRPVLVE-ENGRPRCVACGLCA 80 Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 CP AI++++ R ++I+M++CIYCG C+E CP +AIV ++ ++ Sbjct: 81 RACPPLAISMQAKEVDDVKEREPAWFEINMLRCIYCGYCEEVCPEEAIVMSKEYDLTFQS 140 Query: 131 RQELYYDKERLLNNGDRWESEIV-RNIVTDSPY 162 R E + E+LL +R + + + D Y Sbjct: 141 RDEAIFGLEKLLVPAERLKDRLEWLDRYKDPQY 173 >gi|315615550|gb|EFU96182.1| NADH-quinone oxidoreductase, chain I family protein [Escherichia coli 3431] Length = 175 Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats. Identities = 52/129 (40%), Positives = 72/129 (55%), Gaps = 1/129 (0%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V + ++ + F + T YP E PR+RG L R P+GEERC+AC LC CP Sbjct: 9 VRSIWMIGLHAFAKRETRMYPEEPVYLPPRYRGRIVLTRDPDGEERCVACNLCAVACPVG 68 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 I+++ DG + I+ +CI+CGLC+EACP AI P+FE RQ+L Y Sbjct: 69 CISLQKAE-TKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDFEMGEYKRQDLVY 127 Query: 137 DKERLLNNG 145 +KE LL +G Sbjct: 128 EKEDLLISG 136 >gi|197285613|ref|YP_002151485.1| NADH dehydrogenase subunit I [Proteus mirabilis HI4320] gi|227356116|ref|ZP_03840506.1| NADH-quinone oxidoreductase chain I [Proteus mirabilis ATCC 29906] gi|226737407|sp|B4EZC3|NUOI_PROMH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|194683100|emb|CAR43657.1| NADH-quinone oxidoreductase chain I [Proteus mirabilis HI4320] gi|227163761|gb|EEI48673.1| NADH-quinone oxidoreductase chain I [Proteus mirabilis ATCC 29906] Length = 180 Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats. Identities = 56/142 (39%), Positives = 80/142 (56%), Gaps = 8/142 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LKE V F +R + F + T YP E + +PR+RG L R P+GEERC Sbjct: 1 MTLKELVTGFGTQVRSIWMIGLHAFAKRETQMYPEEPVNVAPRYRGRIVLTRDPDGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC A+CP I+++ DG + I+ +CI+CGLC+EACP A+ P+ Sbjct: 61 VACNLCAAVCPVGCISLQKAE-HEDGRWYPEFFRINFSRCIFCGLCEEACPTTALQLTPD 119 Query: 124 FEFATETRQELYYDKERLLNNG 145 FE RQ+L Y+K+ LL +G Sbjct: 120 FEMGEFKRQDLVYEKDDLLISG 141 >gi|325105659|ref|YP_004275313.1| NADH dehydrogenase subunit I [Pedobacter saltans DSM 12145] gi|324974507|gb|ADY53491.1| NADH dehydrogenase subunit I [Pedobacter saltans DSM 12145] Length = 175 Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats. Identities = 52/149 (34%), Positives = 78/149 (52%), Gaps = 10/149 (6%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + ++L + ++ FK K TI YPFE+ S +RG H+L+R G Sbjct: 16 MNFWER----MYLPAIAQGLSITFKHLFKKKVTIQYPFEEREFSNNWRGMHSLKRDEQGR 71 Query: 61 ERCIACKLCEAICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQEACP 114 ERC AC LC CPA+AIT+ S R + Y+I+M++CI+CGLC+EACP Sbjct: 72 ERCTACGLCALSCPAEAITMISAERKKGEENLYREEKYAAVYEINMLRCIFCGLCEEACP 131 Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLN 143 +AI + R++ Y K++L+ Sbjct: 132 KEAIYLDGPIVPSDYLRKDFIYGKDKLVE 160 >gi|327403952|ref|YP_004344790.1| NADH dehydrogenase subunit I [Fluviicola taffensis DSM 16823] gi|327319460|gb|AEA43952.1| NADH dehydrogenase subunit I [Fluviicola taffensis DSM 16823] Length = 179 Score = 123 bits (309), Expect = 8e-27, Method: Composition-based stats. Identities = 49/147 (33%), Positives = 77/147 (52%), Gaps = 6/147 (4%) Query: 7 NVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIAC 66 + ++ +G ++ L++ FK T+ YP K +P +RG+H L+R G E C AC Sbjct: 18 FMEKMYFPAILGGMWITLKHVFKKHNTVKYPEVKREFAPVYRGQHVLKRDEEGRENCTAC 77 Query: 67 KLCEAICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 LC CPA+AIT+ S R + Y+I+M++CI+CGLC+EACP +AI Sbjct: 78 GLCAVACPAEAITMTSEERKKGEEHLYREEKYATTYEINMLRCIFCGLCEEACPKEAIFL 137 Query: 121 GPNFEFATETRQELYYDKERLLNNGDR 147 R + Y K++L+ D+ Sbjct: 138 TDRIVPTYFERNDFIYGKDKLVEPVDQ 164 >gi|307131807|ref|YP_003883823.1| NADH:ubiquinone oxidoreductase subunit I [Dickeya dadantii 3937] gi|306529336|gb|ADM99266.1| NADH:ubiquinone oxidoreductase, chain I [Dickeya dadantii 3937] Length = 180 Score = 123 bits (308), Expect = 8e-27, Method: Composition-based stats. Identities = 54/142 (38%), Positives = 76/142 (53%), Gaps = 8/142 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LKE + F +R FK + T YP E + PRFRG L R P+G+ERC Sbjct: 1 MTLKELLIGFGTQVRSICMVGSNAFKKRETKMYPEEPVNPPPRFRGRIVLTRDPDGQERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC CP I+++ G + I+ +CI+CG+C+EACP AI P+ Sbjct: 61 VACNLCAVACPVGCISLQKAEMKD-GRWYPEFFRINFSRCIFCGMCEEACPTTAIQLTPD 119 Query: 124 FEFATETRQELYYDKERLLNNG 145 FE RQ+L Y+K+ LL +G Sbjct: 120 FEMGEFKRQDLVYEKDDLLISG 141 >gi|254442137|ref|ZP_05055613.1| NADH-quinone oxidoreductase, chain I subfamily [Verrucomicrobiae bacterium DG1235] gi|198256445|gb|EDY80753.1| NADH-quinone oxidoreductase, chain I subfamily [Verrucomicrobiae bacterium DG1235] Length = 180 Score = 123 bits (308), Expect = 8e-27, Method: Composition-based stats. Identities = 47/146 (32%), Positives = 72/146 (49%), Gaps = 6/146 (4%) Query: 6 CNVSFLFLKEFVGAFFLCLRYF-FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64 + L++ E + R F T+ YP ++ +RG L R P G E+C+ Sbjct: 11 NLLEKLYIPEIARGLAVTFRRMLFGETVTLEYPEQRPPIPAGYRGVPTLVRDPEGREKCV 70 Query: 65 ACKLCEAICPAQAITIESGPRCH-----DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 +C+LCE +CP +AI I G + +DIDM++CIYCG+CQE CP +AI Sbjct: 71 SCQLCEFVCPPKAIRITPGEIPEDSEYAHVEKGPKEFDIDMLRCIYCGMCQEVCPEEAIW 130 Query: 120 EGPNFEFATETRQELYYDKERLLNNG 145 + + +R E+ DK +L G Sbjct: 131 LQNQYSMSGYSRAEMVNDKTKLYELG 156 >gi|322831991|ref|YP_004212018.1| NADH-quinone oxidoreductase, chain I [Rahnella sp. Y9602] gi|321167192|gb|ADW72891.1| NADH-quinone oxidoreductase, chain I [Rahnella sp. Y9602] Length = 180 Score = 123 bits (308), Expect = 9e-27, Method: Composition-based stats. Identities = 50/129 (38%), Positives = 71/129 (55%), Gaps = 1/129 (0%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V + ++ + F + T YP + PR+RG L R P+GEERC+AC LC CP Sbjct: 14 VRSLWMIGMHAFAKRETQMYPEVPVNPPPRYRGRIVLTRDPDGEERCVACNLCAVACPVG 73 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 I+++ G + I+ +CI+CGLC+EACP AI P+FE RQ+L Y Sbjct: 74 CISLQKAEMKD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDFELGEFKRQDLVY 132 Query: 137 DKERLLNNG 145 +KE LL +G Sbjct: 133 EKEDLLISG 141 >gi|262280139|ref|ZP_06057924.1| NADH-quinone oxidoreductase subunit I [Acinetobacter calcoaceticus RUH2202] gi|262260490|gb|EEY79223.1| NADH-quinone oxidoreductase subunit I [Acinetobacter calcoaceticus RUH2202] Length = 180 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 52/135 (38%), Positives = 72/135 (53%), Gaps = 3/135 (2%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGS--TSPRFRGEHALRRYPNGEERCIACKLCE 70 V + F+ + + + TI YP PRFRG L R P+GEERC+AC LC Sbjct: 8 FGSIVRSLFMVFSHVTRKRDTILYPEVPAEQIVPPRFRGRIVLTRDPDGEERCVACNLCA 67 Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 CP I+++ DG + I+ +CI+CG+C+EACP AI P+FE Sbjct: 68 VACPVGCISLQKAE-TEDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQMTPDFELGEYV 126 Query: 131 RQELYYDKERLLNNG 145 RQ+L Y+KE LL +G Sbjct: 127 RQDLVYEKENLLISG 141 >gi|15616781|ref|NP_239993.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11133970|sp|P57259|NUOI_BUCAI RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|25282723|pir||G84948 NADH2 dehydrogenase (ubiquinone) (EC 1.6.5.3) chain I [imported] - Buchnera sp. (strain APS) gi|10038844|dbj|BAB12879.1| NADH dehydrogenase I chain I [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 180 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 51/140 (36%), Positives = 75/140 (53%), Gaps = 2/140 (1%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 N+ F + F + F T YP EK +PR+RG L R +G+ERC+A Sbjct: 4 KNIIIGFFTQIRSIFMIGA-NIFSKPETKLYPEEKVYLAPRYRGRIILTRNIDGQERCVA 62 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 C LC +CP I+++ + G + I+ +CI+CGLC+EACP AI P+FE Sbjct: 63 CNLCAVVCPVDCISLQKSEKTD-GRWYPKFFRINFSRCIFCGLCEEACPTAAIQLMPDFE 121 Query: 126 FATETRQELYYDKERLLNNG 145 + RQ+L Y+K+ LL +G Sbjct: 122 LSDFKRQDLVYEKKDLLISG 141 >gi|146298998|ref|YP_001193589.1| NADH-quinone oxidoreductase, chain I [Flavobacterium johnsoniae UW101] gi|146153416|gb|ABQ04270.1| NADH dehydrogenase subunit I [Flavobacterium johnsoniae UW101] Length = 181 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 51/143 (35%), Positives = 78/143 (54%), Gaps = 8/143 (5%) Query: 7 NVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIAC 66 + L+L V + L++ F+ K TI+YP + SP +RG+H L+R G E C AC Sbjct: 22 FIERLYLVAIVKGLAITLKHLFRKKITIHYPEQVREMSPVYRGQHMLKRDEQGRENCTAC 81 Query: 67 KLCEAICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 LC CPA+AIT+++ R + Y+I+M++CI+CGLC+EACP DAI Sbjct: 82 GLCALSCPAEAITMKAAERKADEKHLYREEKYAEIYEINMLRCIFCGLCEEACPKDAIYL 141 Query: 121 G--PNFEFATETRQELYYDKERL 141 A R++ + K++L Sbjct: 142 TTSKVLVPANYDREDFIFGKDKL 164 >gi|397906|emb|CAA48368.1| NADH dehydrogenase I, subunit nuoI [Escherichia coli] Length = 179 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 55/141 (39%), Positives = 74/141 (52%), Gaps = 7/141 (4%) Query: 11 LFLKEFVGAFFLCLRYFF------KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64 + LKE + F +R + T YP E PR+RG L R P+GEERC+ Sbjct: 1 MTLKELLVGFGTQVRSIWMIGLHGSPNQTRMYPEEPVYLPPRYRGRIVLTRDPDGEERCV 60 Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 AC LC CP I+++ DG + I+ +CI+CGLC+EACP AI P+F Sbjct: 61 ACNLCAVACPVGCISLQKAE-TKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDF 119 Query: 125 EFATETRQELYYDKERLLNNG 145 E RQ+L Y+KE LL +G Sbjct: 120 EMGEYKRQDLVYEKEDLLISG 140 >gi|219681536|ref|YP_002467921.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|219682092|ref|YP_002468476.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|257471217|ref|ZP_05635216.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219621825|gb|ACL29981.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219624379|gb|ACL30534.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|311085903|gb|ADP65985.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086476|gb|ADP66557.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311087057|gb|ADP67137.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] gi|311087614|gb|ADP67693.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 180 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 51/140 (36%), Positives = 75/140 (53%), Gaps = 2/140 (1%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 N+ F + F + F T YP EK +PR+RG L R +G+ERC+A Sbjct: 4 KNIIIGFFTQIRSIFMIGA-NIFSKPETKLYPEEKVYLAPRYRGRIILTRNIDGQERCVA 62 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 C LC +CP I+++ + G + I+ +CI+CGLC+EACP AI P+FE Sbjct: 63 CNLCAVVCPVDCISLQKSEKTD-GRWYPKFFRINFSRCIFCGLCEEACPTAAIQLMPDFE 121 Query: 126 FATETRQELYYDKERLLNNG 145 + RQ+L Y+K+ LL +G Sbjct: 122 LSDFKRQDLVYEKKDLLISG 141 >gi|283850899|ref|ZP_06368185.1| NADH-quinone oxidoreductase, chain I [Desulfovibrio sp. FW1012B] gi|283573822|gb|EFC21796.1| NADH-quinone oxidoreductase, chain I [Desulfovibrio sp. FW1012B] Length = 187 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 49/120 (40%), Positives = 66/120 (55%), Gaps = 1/120 (0%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 L + F+ T YP K R RG L R P+G ERC+AC LC +CP I+++S Sbjct: 28 TLTHLFRKPVTEQYPEYKRPLPARTRGRIILTRSPDGRERCVACYLCSGVCPVNCISMQS 87 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLL 142 DG R+ + I+ +CIYCGLC+EACP AI P F F+ + + Y+KE LL Sbjct: 88 EE-GPDGRRQAAWFRINFARCIYCGLCEEACPTLAIQLTPEFAFSKDAIADFVYEKEDLL 146 >gi|238898693|ref|YP_002924374.1| NADH dehydrogenase I chain I, 2Fe-2S ferredoxin-related [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466452|gb|ACQ68226.1| NADH dehydrogenase I chain I, 2Fe-2S ferredoxin-related [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 180 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 49/129 (37%), Positives = 72/129 (55%), Gaps = 1/129 (0%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + + ++ + F + T YP + PR+RG L R P+GEERC+AC LC CP Sbjct: 14 LRSLWMIGLHAFHKRETQMYPEKPVYLPPRYRGRIVLTRDPDGEERCVACNLCAVACPVG 73 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 I+++ + G + I+ +CI+CGLC+EACP AI P+FE RQ+L Y Sbjct: 74 CISLQKAEKKD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDFEMGEFKRQDLVY 132 Query: 137 DKERLLNNG 145 +KE LL +G Sbjct: 133 EKEDLLISG 141 >gi|182412302|ref|YP_001817368.1| NADH-quinone oxidoreductase, chain I [Opitutus terrae PB90-1] gi|177839516|gb|ACB73768.1| NADH-quinone oxidoreductase, chain I [Opitutus terrae PB90-1] Length = 180 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 48/139 (34%), Positives = 76/139 (54%), Gaps = 5/139 (3%) Query: 12 FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71 ++ + +G R+ + K T+ YP ++ + P +RG L + PNG E+C++C+LCE Sbjct: 18 YIPQILGGLKTTFRHLVRKKQTMEYPEQRPAIPPGYRGVPTLVKDPNGREKCVSCQLCEF 77 Query: 72 ICPAQAITIESGP-----RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 +CP +AI I G R ++IDM++CIYCG+CQE CP +AI + Sbjct: 78 VCPPKAIRIWPGEIAADAPTAHVERAPREFEIDMLRCIYCGMCQEVCPEEAIFLQQQYTM 137 Query: 127 ATETRQELYYDKERLLNNG 145 TR E+ +K+RL G Sbjct: 138 TGYTRAEMVNNKQRLYELG 156 >gi|300782459|ref|YP_003762750.1| NADH dehydrogenase I subunit I [Amycolatopsis mediterranei U32] gi|299791973|gb|ADJ42348.1| NADH dehydrogenase I subunit I [Amycolatopsis mediterranei U32] Length = 174 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 51/136 (37%), Positives = 68/136 (50%), Gaps = 5/136 (3%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + V F + FK T YP +PR+ G H L R+P+G E+C+ C+LC Sbjct: 3 FLDPVKGFGVTFGMMFKKVATEEYPEAGAPAAPRYHGRHQLNRHPDGLEKCVGCELCAWA 62 Query: 73 CPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CPA AI +E R G R Y I+ ++CI CGLC EACP ++ +E A Sbjct: 63 CPADAIFVEGGDNTEEARFSPGERYGADYQINYLRCIGCGLCIEACPTRSLTMINFYELA 122 Query: 128 TETRQELYYDKERLLN 143 + RQ L Y KE LL Sbjct: 123 DDDRQRLIYTKEDLLA 138 >gi|238920560|ref|YP_002934075.1| NADH dehydrogenase subunit I [Edwardsiella ictaluri 93-146] gi|269139723|ref|YP_003296424.1| formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Edwardsiella tarda EIB202] gi|294637172|ref|ZP_06715480.1| NADH-quinone oxidoreductase subunit I [Edwardsiella tarda ATCC 23685] gi|259514773|sp|C5B8H9|NUOI_EDWI9 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|238870129|gb|ACR69840.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] gi|267985384|gb|ACY85213.1| formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Edwardsiella tarda EIB202] gi|291089636|gb|EFE22197.1| NADH-quinone oxidoreductase subunit I [Edwardsiella tarda ATCC 23685] gi|304559590|gb|ADM42254.1| NADH-ubiquinone oxidoreductase chain I [Edwardsiella tarda FL6-60] Length = 180 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 54/142 (38%), Positives = 75/142 (52%), Gaps = 8/142 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LKE V F +R + F + T YP E PR+RG L R P+G ERC Sbjct: 1 MTLKELVVGFGTQVRSLWMIGLHAFAKRETKMYPEEPVYLPPRYRGRIVLTRDPDGAERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC CP I+++ DG + I+ +CI+CG+C+EACP A+ P+ Sbjct: 61 VACNLCAVACPVGCISLQKAE-TEDGRWYPEFFRINFSRCIFCGMCEEACPTTALQLTPD 119 Query: 124 FEFATETRQELYYDKERLLNNG 145 FE RQ+L Y+KE LL +G Sbjct: 120 FEMGEFRRQDLVYEKEDLLISG 141 >gi|91065090|gb|ABE03922.1| NuoI [Theonella swinhoei bacterial symbiont clone pSW1H8] Length = 145 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 56/136 (41%), Positives = 73/136 (53%), Gaps = 6/136 (4%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEERCIACKLCEA 71 L + + L FK T+ YP + + PRFRG H L R G E+CI C LC A Sbjct: 3 LFDIARGMGVTLGQLFKRPITVRYPEQPVALEPRFRGRHHLLRHPDTGLEKCIGCSLCAA 62 Query: 72 ICPAQAITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 CPA AI +E+ + G R Y+I+M++CI+CGLC+EACP AIV G FE Sbjct: 63 ACPAYAIYVEAAENDPEAPVSAGERYASIYEINMLRCIFCGLCEEACPTGAIVLGHEFEL 122 Query: 127 ATETRQELYYDKERLL 142 A Q+ Y KE L+ Sbjct: 123 ADFRYQDFVYGKEDLM 138 >gi|50083956|ref|YP_045466.1| NADH dehydrogenase subunit I [Acinetobacter sp. ADP1] gi|81393674|sp|Q6FE64|NUOI_ACIAD RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|49529932|emb|CAG67644.1| NADH dehydrogenase I chain I, 2Fe-2S ferredoxin-related [Acinetobacter sp. ADP1] Length = 180 Score = 122 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 50/133 (37%), Positives = 72/133 (54%), Gaps = 3/133 (2%) Query: 15 EFVGAFFLCLRYFFKAKTTINYPFEKGS--TSPRFRGEHALRRYPNGEERCIACKLCEAI 72 V ++ + + + TI YP PR+RG L R P+GEERC+AC LC Sbjct: 10 SIVRTLWMVFTHITRKRDTILYPEVPAEEIVPPRYRGRIVLTRDPDGEERCVACNLCAVA 69 Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 CP I+++ + DG + I+ +CI+CG+C+EACP AI P+FE RQ Sbjct: 70 CPVGCISLQKAEK-EDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQMTPDFELGEYVRQ 128 Query: 133 ELYYDKERLLNNG 145 +L Y+KE LL +G Sbjct: 129 DLVYEKENLLISG 141 >gi|332662321|ref|YP_004445109.1| NAD(P)H-quinone oxidoreductase subunit I [Haliscomenobacter hydrossis DSM 1100] gi|332331135|gb|AEE48236.1| NAD(P)H-quinone oxidoreductase subunit I [Haliscomenobacter hydrossis DSM 1100] Length = 176 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 50/139 (35%), Positives = 70/139 (50%), Gaps = 6/139 (4%) Query: 11 LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70 ++L G + + FK T+ YP + S FRG+H L+R G E C AC LC Sbjct: 21 MYLPAIAGGLRVTFSHMFKKSATVQYPEQVREHSAVFRGQHVLKRDAEGRENCTACGLCA 80 Query: 71 AICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 CPA+AITI + R + YDI+M++CI+CGLC+EACP DAI Sbjct: 81 VACPAEAITIVAEERKKGEEHLYREEKYAAVYDINMLRCIFCGLCEEACPKDAIYLTDRI 140 Query: 125 EFATETRQELYYDKERLLN 143 + R + + KE L+ Sbjct: 141 VTSNYERADFIFHKEDLVE 159 >gi|268318172|ref|YP_003291891.1| NADH-quinone oxidoreductase, chain I [Rhodothermus marinus DSM 4252] gi|262335706|gb|ACY49503.1| NADH-quinone oxidoreductase, chain I [Rhodothermus marinus DSM 4252] Length = 230 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 46/153 (30%), Positives = 70/153 (45%), Gaps = 2/153 (1%) Query: 11 LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70 L+L V R T YP E +RG L NG RC+AC LC Sbjct: 22 LYLPAVVQGLAYTWRKMRSPLYTFQYPDELWYPPDSYRGRPVLVE-ENGRPRCVACGLCA 80 Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 CP AI++++ R ++I+M++CIYCG C+E CP +AIV ++ ++ Sbjct: 81 RACPPLAISMQAKEVDDVKEREPAWFEINMLRCIYCGYCEEVCPEEAIVMSKEYDLTFQS 140 Query: 131 RQELYYDKERLLNNGDRWESEIV-RNIVTDSPY 162 R E + E+LL +R + + + D Y Sbjct: 141 RDEAIFGLEKLLVPAERLKDRLEWLDRYKDPQY 173 >gi|237751588|ref|ZP_04582068.1| NADH-ubiquinone oxidoreductase [Helicobacter bilis ATCC 43879] gi|229372954|gb|EEO23345.1| NADH-ubiquinone oxidoreductase [Helicobacter bilis ATCC 43879] Length = 206 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 58/145 (40%), Positives = 76/145 (52%), Gaps = 3/145 (2%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62 F+ +V + + L ++ FF TINYPFE SPR+R H L R +G ER Sbjct: 34 FKRSVKLSLGADIIKGLGLTIKEFFSKPVTINYPFETQPLSPRYRAVHNLQRMLESGSER 93 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C LCE IC + I I + DG ++ Y I++ +CIYCGLC E CP AIV G Sbjct: 94 CIGCGLCEKICTSNCIRILTHE-GEDGRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 152 Query: 123 NFEFATETRQELYYDKERLLNNGDR 147 FE A+E R KE L + + Sbjct: 153 RFENASEQRAHFGL-KEDFLKDLEE 176 >gi|163751853|ref|ZP_02159068.1| NADH dehydrogenase subunit I [Shewanella benthica KT99] gi|161328269|gb|EDP99431.1| NADH dehydrogenase subunit I [Shewanella benthica KT99] Length = 171 Score = 122 bits (306), Expect = 1e-26, Method: Composition-based stats. Identities = 52/129 (40%), Positives = 69/129 (53%), Gaps = 1/129 (0%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + L++ F T+ YP +K SPR+RG L R P+GEERC+AC LC CP Sbjct: 5 IRTLITILKHTFTPADTVQYPEQKPYLSPRYRGRIVLTRDPDGEERCVACNLCSVACPVD 64 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 I++E + G + I+ +CI CG C+EACP AI P+FE A RQ L Y Sbjct: 65 CISVEKTEKPD-GRWEAKTFTINFSRCIMCGFCEEACPTHAIQLTPDFEMAEYDRQNLVY 123 Query: 137 DKERLLNNG 145 +K LL G Sbjct: 124 EKHHLLIAG 132 >gi|297625736|ref|YP_003687499.1| NADH-quinone oxidoreductase subunit I (NADH dehydrogenase I subunit I) (NDH-1 subunit I) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921501|emb|CBL56055.1| NADH-quinone oxidoreductase subunit I (NADH dehydrogenase I subunit I) (NDH-1 subunit I) [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 190 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 53/134 (39%), Positives = 72/134 (53%), Gaps = 7/134 (5%) Query: 17 VGAFFLCLRYFFKAKTTINYPFE--KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP 74 F + R F+ T YP + + +PRF G H L R+P+G E+C+ C+LC CP Sbjct: 4 WSGFGITFRTMFRKSFTQGYPEKGKERLVAPRFHGRHQLNRWPDGLEKCVGCELCSWACP 63 Query: 75 AQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 A AI +E R G R Y I+ ++CI CG+C EACP A+ F+ A E Sbjct: 64 ADAIYVEGADNTEEERYSPGERYGRVYQINYLRCILCGMCIEACPTRALTMTNEFKLADE 123 Query: 130 TRQELYYDKERLLN 143 TR+ L YDK+RLL Sbjct: 124 TRESLIYDKDRLLA 137 >gi|150026254|ref|YP_001297080.1| NADH dehydrogenase I, I subunit [Flavobacterium psychrophilum JIP02/86] gi|156633518|sp|A6H1Q5|NUOI_FLAPJ RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|149772795|emb|CAL44279.1| NADH dehydrogenase I, I subunit [Flavobacterium psychrophilum JIP02/86] Length = 183 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 51/148 (34%), Positives = 81/148 (54%), Gaps = 8/148 (5%) Query: 7 NVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIAC 66 + L+L V + +++FF+ K TI+YP + SP +RG+H L+R G E C AC Sbjct: 24 FLESLYLVAIVKGLLITIKHFFRKKVTIHYPEQVREMSPVYRGQHMLKRDEQGRENCTAC 83 Query: 67 KLCEAICPAQAITIESGPRCHDGT------RRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 LC CPA+AIT+++ R + + Y+I+M++CI+CGLC+EACP DAI Sbjct: 84 GLCALSCPAEAITMKAAERKSNEKHLYREEKYAEIYEINMLRCIFCGLCEEACPKDAIYL 143 Query: 121 G--PNFEFATETRQELYYDKERLLNNGD 146 + R+ + K++L+ D Sbjct: 144 TTSKVLVPSNYERENFIFGKDKLVMPLD 171 >gi|284106853|ref|ZP_06386296.1| NADH dehydrogenase subunit I [Candidatus Poribacteria sp. WGA-A3] gi|283830032|gb|EFC34308.1| NADH dehydrogenase subunit I [Candidatus Poribacteria sp. WGA-A3] Length = 179 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 56/163 (34%), Positives = 88/163 (53%), Gaps = 3/163 (1%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFK-AKTTINYPFEKGSTSPRFRGEHALRRYPNG 59 M++ + S +F E + L++F K T+ YP K +RG L RY + Sbjct: 1 MKLKKWIQSLIFF-EILLGMRETLKHFLKYRPITLEYPHVKKPLPENYRGMLGLLRYDDE 59 Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR-YDIDMIKCIYCGLCQEACPVDAI 118 E+C+ C LCEA CP++ I + S + T+R + Y +DM +C++CGLC +ACPVDA+ Sbjct: 60 TEKCVGCDLCEAACPSRVIRVVSAEVPGEPTKRFAKEYYMDMTRCLFCGLCVDACPVDAL 119 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161 FE+A ++ L+ +KE+LL GDR E + + P Sbjct: 120 GMSQEFEWAVYDKRHLHLNKEQLLAIGDRAFPEREKRLEFQHP 162 >gi|148266246|ref|YP_001232952.1| NADH-quinone oxidoreductase, chain I [Geobacter uraniireducens Rf4] gi|146399746|gb|ABQ28379.1| NADH dehydrogenase subunit I [Geobacter uraniireducens Rf4] Length = 132 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 52/128 (40%), Positives = 76/128 (59%), Gaps = 2/128 (1%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + L++ F+ T+ YP E+ P FRG HAL + +C+AC LC +CPA Sbjct: 5 LLKGLQITLKHLFQKPVTLQYPDERPKIEPGFRGLHALNVSHD-RAKCVACYLCPTVCPA 63 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 + IT+E+G + + +Y+IDM++CI+CG C EACPVDAI FE A+ RQ+ Sbjct: 64 KCITVEAGED-ENHDKFAAKYEIDMLRCIFCGYCVEACPVDAIRMTDTFELASYKRQDFI 122 Query: 136 YDKERLLN 143 + KERLL Sbjct: 123 FTKERLLE 130 >gi|115523735|ref|YP_780646.1| NADH dehydrogenase subunit I [Rhodopseudomonas palustris BisA53] gi|123321218|sp|Q07QW8|NUOI1_RHOP5 RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName: Full=NADH dehydrogenase I subunit I 1; AltName: Full=NDH-1 subunit I 1 gi|115517682|gb|ABJ05666.1| NADH-quinone oxidoreductase, chain I [Rhodopseudomonas palustris BisA53] Length = 173 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 48/131 (36%), Positives = 65/131 (49%), Gaps = 1/131 (0%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 ++ R F T+ YP + PR RG L R P+G+ERC+AC LC CP Sbjct: 6 WLEGLLRVGRKLFVKAETVQYPEVRPYLPPRSRGRIVLTRDPDGQERCVACNLCAVACPV 65 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 I + + DG + I+ +CI+CG C+EACP AI P+FE + R L Sbjct: 66 GCIDL-AKAVAEDGRWYPEHFRINFARCIFCGYCEEACPTAAIQLTPDFELSEWRRDALV 124 Query: 136 YDKERLLNNGD 146 YDK LL G+ Sbjct: 125 YDKHDLLIAGE 135 >gi|296124098|ref|YP_003631876.1| NADH-quinone oxidoreductase, chain I [Planctomyces limnophilus DSM 3776] gi|296016438|gb|ADG69677.1| NADH-quinone oxidoreductase, chain I [Planctomyces limnophilus DSM 3776] Length = 222 Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 52/154 (33%), Positives = 73/154 (47%), Gaps = 11/154 (7%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFK-AKTTINYPFEKGSTSPRFRGEHALRRYPNG 59 M + FL LR+ T YP EK +RG H L R G Sbjct: 21 MGFWEST----FLPAIFSGLKNSLRHVTDFKPVTQQYPEEKPDLPLNYRGVHRLNRDDKG 76 Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGT------RRTVRYDIDMIKCIYCGLCQEAC 113 +C+AC +C CPA+ I I + D +R + ID +KCIYCG+C+EAC Sbjct: 77 RVKCVACMMCSTACPARCIEIVAEEAPKDDPLWADRDKRPKSFVIDELKCIYCGMCEEAC 136 Query: 114 PVDAIVEGPNFEFATETRQELYYDKERLLNNGDR 147 PVD+I ++ TRQE+ ++KE+LL D+ Sbjct: 137 PVDSIELTHIYDLTGMTRQEMKFNKEKLLEVFDQ 170 >gi|319789715|ref|YP_004151348.1| NADH-quinone oxidoreductase, chain I [Thermovibrio ammonificans HB-1] gi|317114217|gb|ADU96707.1| NADH-quinone oxidoreductase, chain I [Thermovibrio ammonificans HB-1] Length = 152 Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 54/156 (34%), Positives = 80/156 (51%), Gaps = 5/156 (3%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M I + + + + + L+ FK T++YPFEK RFRG HAL+ P+G Sbjct: 1 MSILKKA----LMIDLLKGMKVTLKTAFKPTVTVHYPFEKVPPRERFRGIHALKLNPDGS 56 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 RC AC LC +CP+ I +E DG + V + +D+ +C++CGLC EACP DAIV Sbjct: 57 YRCEACYLCAEMCPSNVIDMEMTE-GKDGKKELVDFTVDLTRCLFCGLCVEACPRDAIVM 115 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNI 156 +EF+ +L KE L+ G ++ Sbjct: 116 TDIYEFSQYEVGKLILHKEDLMKLGRYYQERERSRR 151 >gi|119595092|gb|EAW74686.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase), isoform CRA_b [Homo sapiens] gi|119595094|gb|EAW74688.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase), isoform CRA_b [Homo sapiens] Length = 172 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 82/121 (67%), Positives = 89/121 (73%), Gaps = 2/121 (1%) Query: 1 MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59 M+ + L E + L Y F+ TINYPFEKG SPRFRGEHALRRYP+G Sbjct: 48 MKSVTDRAARTLLWTELFRGLGMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSG 107 Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 EERCIACKLCEAICPAQAITIE+ PR G+RRT RYDIDM KCIYCG CQEACPVDAIV Sbjct: 108 EERCIACKLCEAICPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIV 166 Query: 120 E 120 E Sbjct: 167 E 167 >gi|221633448|ref|YP_002522673.1| NADH-quinone oxidoreductase subunit i [Thermomicrobium roseum DSM 5159] gi|221155537|gb|ACM04664.1| nadh-quinone oxidoreductase chain i [Thermomicrobium roseum DSM 5159] Length = 220 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 51/132 (38%), Positives = 70/132 (53%), Gaps = 2/132 (1%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPN-GEERCIACKLCEAICPA 75 + F + LR+FF+ TI YP EK +PRFRG ALR P GE C+AC LC ICP Sbjct: 75 IRGFLVTLRHFFQRPVTIQYPEEKREPAPRFRGLPALRSDPETGEALCVACGLCARICPT 134 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 + + P +G R + + +C++CGLC + CPVDAI +E + R+ L Sbjct: 135 SCLEMHVVP-SEEGDRELGEFILRAGRCMFCGLCAQVCPVDAITMSGEYEQSVLDREGLI 193 Query: 136 YDKERLLNNGDR 147 Y K L G + Sbjct: 194 YVKTELAAIGSQ 205 >gi|326799008|ref|YP_004316827.1| NAD(P)H-quinone oxidoreductase subunit I [Sphingobacterium sp. 21] gi|326549772|gb|ADZ78157.1| NAD(P)H-quinone oxidoreductase subunit I [Sphingobacterium sp. 21] Length = 169 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 51/149 (34%), Positives = 80/149 (53%), Gaps = 10/149 (6%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + ++L + + +R+FF+ K T++YP + S +RG H+L+R G Sbjct: 16 MNFWER----MYLPAILKGMRVTIRHFFRKKATVSYPEVERPYSKNYRGMHSLKRDEEGR 71 Query: 61 ERCIACKLCEAICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQEACP 114 ERC AC LC CPA+AIT+ S R + Y+I+M++CI+CGLC+EACP Sbjct: 72 ERCTACGLCALSCPAEAITMISAERKKGEEHLYREEKYAAVYEINMLRCIFCGLCEEACP 131 Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLN 143 +AI A R++ Y K++L+ Sbjct: 132 KEAIYLDGPHVPADYLRKDFIYGKDKLVE 160 >gi|320540447|ref|ZP_08040097.1| putative NADH:ubiquinone oxidoreductase, chain I [Serratia symbiotica str. Tucson] gi|320029378|gb|EFW11407.1| putative NADH:ubiquinone oxidoreductase, chain I [Serratia symbiotica str. Tucson] Length = 176 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 54/142 (38%), Positives = 75/142 (52%), Gaps = 8/142 (5%) Query: 11 LFLKEFVGAF-------FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LKE V F ++ + F + T YP E PR+RG L R P+G ERC Sbjct: 1 MTLKELVVGFCTQVRSIWMIGLHAFAKRETQMYPEEPVYLPPRYRGRIVLTRDPDGAERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC CP I+++ + G + I+ +CI+CGLC+EACP AI P+ Sbjct: 61 VACNLCAVACPVSCISLQKAEQQD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119 Query: 124 FEFATETRQELYYDKERLLNNG 145 FE RQ+L Y+KE LL +G Sbjct: 120 FEMGEFKRQDLVYEKEDLLISG 141 >gi|90425539|ref|YP_533909.1| NADH dehydrogenase subunit I [Rhodopseudomonas palustris BisB18] gi|115502515|sp|Q20Z46|NUOI2_RHOPB RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName: Full=NADH dehydrogenase I subunit I 2; AltName: Full=NDH-1 subunit I 2 gi|90107553|gb|ABD89590.1| NADH-quinone oxidoreductase, chain I [Rhodopseudomonas palustris BisB18] Length = 171 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 49/134 (36%), Positives = 66/134 (49%), Gaps = 1/134 (0%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + ++ A R T+ YP K PR RG L R P+G+ERC+AC LC Sbjct: 1 MIGWLEALLRVGRKLAAKTVTVQYPEVKPQLPPRSRGRIVLTRDPDGQERCVACNLCAVA 60 Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 CP I + DG + I+ +CI+CG C+EACP AI P+FE + R Sbjct: 61 CPVGCIDLSKA-VAEDGRWYPEHFRINFARCIFCGYCEEACPTAAIQLTPDFELSEWRRD 119 Query: 133 ELYYDKERLLNNGD 146 L YDK+ LL G+ Sbjct: 120 ALVYDKKDLLIAGE 133 >gi|193213781|ref|YP_001994980.1| NADH-quinone oxidoreductase subunit I [Chloroherpeton thalassium ATCC 35110] gi|226737388|sp|B3QSE2|NUOI_CHLT3 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|193087258|gb|ACF12533.1| NADH-quinone oxidoreductase, chain I [Chloroherpeton thalassium ATCC 35110] Length = 183 Score = 121 bits (303), Expect = 3e-26, Method: Composition-based stats. Identities = 48/159 (30%), Positives = 71/159 (44%), Gaps = 1/159 (0%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALR-RYPNGEERCI 64 + L+L E + R F T YP K FRG L R ERC+ Sbjct: 14 NFLERLYLPEVLKGLGYTFRQIFAPIFTTEYPDVKWQPPAVFRGRPVLVERDDKTGERCV 73 Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 AC LC +CP AI+I++ + R ++I+M++CIYCG C+E CP +AIV + Sbjct: 74 ACGLCSRVCPPMAISIQAEETELEQERHPATFEINMLRCIYCGYCEEVCPEEAIVMSDEY 133 Query: 125 EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + R+ DK +LL R + + + R Sbjct: 134 DITFNNRENAIMDKSKLLVPVARVQKRLDFLKEYKNKVR 172 >gi|169634174|ref|YP_001707910.1| NADH dehydrogenase subunit I [Acinetobacter baumannii SDF] gi|169797051|ref|YP_001714844.1| NADH dehydrogenase subunit I [Acinetobacter baumannii AYE] gi|184157036|ref|YP_001845375.1| NADH dehydrogenase subunit I [Acinetobacter baumannii ACICU] gi|239501287|ref|ZP_04660597.1| NADH dehydrogenase subunit I [Acinetobacter baumannii AB900] gi|260551026|ref|ZP_05825231.1| NADH-quinone oxidoreductase subunit I [Acinetobacter sp. RUH2624] gi|260555657|ref|ZP_05827877.1| NADH-plastoquinone oxidoreductase, I subunit [Acinetobacter baumannii ATCC 19606] gi|301347787|ref|ZP_07228528.1| NADH dehydrogenase subunit I [Acinetobacter baumannii AB056] gi|301510622|ref|ZP_07235859.1| NADH dehydrogenase subunit I [Acinetobacter baumannii AB058] gi|301595907|ref|ZP_07240915.1| NADH dehydrogenase subunit I [Acinetobacter baumannii AB059] gi|332852140|ref|ZP_08433967.1| NADH-quinone oxidoreductase subunit I [Acinetobacter baumannii 6013150] gi|332867539|ref|ZP_08437692.1| NADH-quinone oxidoreductase subunit I [Acinetobacter baumannii 6013113] gi|332872611|ref|ZP_08440579.1| NADH-quinone oxidoreductase subunit I [Acinetobacter baumannii 6014059] gi|156632697|sp|A3M2Q5|NUOI_ACIBT RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|226737380|sp|B2HU48|NUOI_ACIBC RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|226737381|sp|B0VU49|NUOI_ACIBS RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|226737382|sp|B0V894|NUOI_ACIBY RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|169149978|emb|CAM87872.1| NADH dehydrogenase I chain I, 2Fe-2S ferredoxin-related [Acinetobacter baumannii AYE] gi|169152966|emb|CAP02012.1| NADH dehydrogenase I chain I, 2Fe-2S ferredoxin-related [Acinetobacter baumannii] gi|183208630|gb|ACC56028.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Acinetobacter baumannii ACICU] gi|193076541|gb|ABO11199.2| NADH dehydrogenase I chain I 2Fe-2S ferredoxin-related [Acinetobacter baumannii ATCC 17978] gi|260405974|gb|EEW99461.1| NADH-quinone oxidoreductase subunit I [Acinetobacter sp. RUH2624] gi|260410568|gb|EEX03866.1| NADH-plastoquinone oxidoreductase, I subunit [Acinetobacter baumannii ATCC 19606] gi|332729512|gb|EGJ60851.1| NADH-quinone oxidoreductase subunit I [Acinetobacter baumannii 6013150] gi|332733956|gb|EGJ65101.1| NADH-quinone oxidoreductase subunit I [Acinetobacter baumannii 6013113] gi|332739140|gb|EGJ69999.1| NADH-quinone oxidoreductase subunit I [Acinetobacter baumannii 6014059] Length = 180 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 52/133 (39%), Positives = 73/133 (54%), Gaps = 3/133 (2%) Query: 15 EFVGAFFLCLRYFFKAKTTINYPFEKGS--TSPRFRGEHALRRYPNGEERCIACKLCEAI 72 V F+ + F+ + TI YP PR+RG L R P+GEERC+AC LC Sbjct: 10 SIVRTLFMVFTHGFRKRDTILYPEVPAEEIVPPRYRGRIILTRDPDGEERCVACNLCAVA 69 Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 CP I+++ + DG + I+ +CI+CG+C+EACP AI P+FE RQ Sbjct: 70 CPVGCISLQKAEK-EDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQLTPDFELGEYVRQ 128 Query: 133 ELYYDKERLLNNG 145 +L Y+KE LL +G Sbjct: 129 DLVYEKENLLISG 141 >gi|291285965|ref|YP_003502781.1| NADH-quinone oxidoreductase, chain I [Denitrovibrio acetiphilus DSM 12809] gi|290883125|gb|ADD66825.1| NADH-quinone oxidoreductase, chain I [Denitrovibrio acetiphilus DSM 12809] Length = 165 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 45/143 (31%), Positives = 72/143 (50%), Gaps = 1/143 (0%) Query: 5 RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64 + +FL E + + L + FK T YP+E RFRG ++ + +G +C+ Sbjct: 3 KNIFETIFLTEILKGLSITLSHMFKKPVTYKYPYEATPIMDRFRGIQYIKTHEDGRTKCV 62 Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 C LC+ +CP++ I IE+ +G R +Y++D+ +CIYCG C+E CPVDAI G + Sbjct: 63 GCYLCQKVCPSECIHIETD-CGPNGERLIRKYELDLSRCIYCGYCEEVCPVDAIHMGWEW 121 Query: 125 EFATETRQELYYDKERLLNNGDR 147 R + + L N Sbjct: 122 NTVDSNRDNYVINMKTLSQNYKD 144 >gi|313672286|ref|YP_004050397.1| NADH-quinone oxidoreductase, chain i [Calditerrivibrio nitroreducens DSM 19672] gi|312939042|gb|ADR18234.1| NADH-quinone oxidoreductase, chain I [Calditerrivibrio nitroreducens DSM 19672] Length = 145 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 50/146 (34%), Positives = 80/146 (54%), Gaps = 1/146 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 R + LF E + + L++ FK T+ YPFEK RFRG H ++ G +C Sbjct: 1 MRNIIDTLFFTEILQGLGITLKHMFKKPVTLKYPFEKPIIFDRFRGIHYIKTDEKGNPKC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + C LC+ +CP++ I IE+ +G R +++I++ +CIYCG C+EACP DAI G Sbjct: 61 VGCYLCQKVCPSECIHIETD-AGPNGERLIRKFEIELDRCIYCGFCEEACPKDAIHMGRR 119 Query: 124 FEFATETRQELYYDKERLLNNGDRWE 149 ++ TR + + L+ N ++ E Sbjct: 120 YDTVAPTRDKYLVNMGYLVKNYNKGE 145 >gi|307822808|ref|ZP_07653039.1| NADH-quinone oxidoreductase, chain I [Methylobacter tundripaludum SV96] gi|307736412|gb|EFO07258.1| NADH-quinone oxidoreductase, chain I [Methylobacter tundripaludum SV96] Length = 171 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 48/129 (37%), Positives = 72/129 (55%), Gaps = 1/129 (0%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + + + L++ F T+ YP +K + PR+RG L R P+GEERC+AC LC CP Sbjct: 5 LRSLWEVLKHTFVKPDTVEYPEQKPALFPRYRGRIVLTRDPDGEERCVACNLCAVACPVD 64 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 I ++ +G + I+ +CI CG C+EACP +AI P+FE RQ + Y Sbjct: 65 CIVLQKAED-ENGRWYPEFFRINFSRCIMCGFCEEACPTNAIQLTPDFEMCEYDRQNMVY 123 Query: 137 DKERLLNNG 145 +K+ LL +G Sbjct: 124 EKQHLLIDG 132 >gi|85059572|ref|YP_455274.1| NADH dehydrogenase subunit I [Sodalis glossinidius str. 'morsitans'] gi|110287775|sp|Q2NSK6|NUOI_SODGM RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|84780092|dbj|BAE74869.1| NADH dehydrogenase I subunit I [Sodalis glossinidius str. 'morsitans'] Length = 180 Score = 121 bits (303), Expect = 4e-26, Method: Composition-based stats. Identities = 54/142 (38%), Positives = 73/142 (51%), Gaps = 8/142 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LKE LR F + T YP + PRFRG L R P+G+ERC Sbjct: 1 MTLKELAIGCGTTLRSIWMIGMQAFNKRETRMYPDVPVNPPPRFRGRIVLTRDPDGDERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC CP I+++ DG + I+ +CI+CGLC+EACP AI P+ Sbjct: 61 VACNLCAVACPVDCISLQKAE-TKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119 Query: 124 FEFATETRQELYYDKERLLNNG 145 FE RQ+L Y+K+ LL +G Sbjct: 120 FEMGEFKRQDLVYEKDDLLISG 141 >gi|332830196|gb|EGK02824.1| NADH-quinone oxidoreductase subunit I [Dysgonomonas gadei ATCC BAA-286] Length = 178 Score = 120 bits (302), Expect = 4e-26, Method: Composition-based stats. Identities = 50/145 (34%), Positives = 80/145 (55%), Gaps = 8/145 (5%) Query: 7 NVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIAC 66 + ++L V ++ +++FFK K TI YP ++ SP +RG+H L R G ERC AC Sbjct: 23 FIESIYLPAIVQGMWITIKHFFKKKNTIQYPEQQREFSPVYRGQHVLMRDDQGRERCTAC 82 Query: 67 KLCEAICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 LC CPA+AIT+ + R + Y+I+M++CI+CGLC++ACP +AI Sbjct: 83 GLCALACPAEAITMVAAERKKGEEHLYREEKYAATYEINMLRCIFCGLCEDACPKEAIFL 142 Query: 121 GPNFEFATET--RQELYYDKERLLN 143 + R++ Y K++L+ Sbjct: 143 TKSKLLVKPKLEREDFIYGKDKLVI 167 >gi|293609132|ref|ZP_06691435.1| conserved hypothetical protein [Acinetobacter sp. SH024] gi|292829705|gb|EFF88067.1| conserved hypothetical protein [Acinetobacter sp. SH024] Length = 180 Score = 120 bits (302), Expect = 4e-26, Method: Composition-based stats. Identities = 51/135 (37%), Positives = 70/135 (51%), Gaps = 3/135 (2%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGS--TSPRFRGEHALRRYPNGEERCIACKLCE 70 V + + + + TI YP PRFRG L R P+GEERC+AC LC Sbjct: 8 FGSIVRTLLMVFSHATRKRDTILYPEVPAEQIVPPRFRGRIVLTRDPDGEERCVACNLCA 67 Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 CP I+++ DG + I+ +CI+CG+C+EACP AI P+FE Sbjct: 68 VACPVGCISLQKAE-TEDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQLTPDFELGEYV 126 Query: 131 RQELYYDKERLLNNG 145 RQ+L Y+KE LL +G Sbjct: 127 RQDLVYEKENLLISG 141 >gi|222053578|ref|YP_002535940.1| NADH-quinone oxidoreductase, chain I [Geobacter sp. FRC-32] gi|221562867|gb|ACM18839.1| NADH-quinone oxidoreductase, chain I [Geobacter sp. FRC-32] Length = 132 Score = 120 bits (302), Expect = 4e-26, Method: Composition-based stats. Identities = 51/128 (39%), Positives = 73/128 (57%), Gaps = 2/128 (1%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + L + FK T+ YP E+ +P FRG HAL + +C+AC LC +CPA Sbjct: 5 LLKGLGITLSHLFKKPVTLQYPDERPEVAPTFRGLHALNISH-DKAKCVACYLCPTVCPA 63 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 + I +E+G + + Y+IDM++CI+CG C EACPVDA+ FE A TR + Sbjct: 64 KCIKVEAGED-ENHNKYAAEYEIDMLRCIFCGFCVEACPVDAVRMTEAFELANYTRADFV 122 Query: 136 YDKERLLN 143 + KERLL Sbjct: 123 FSKERLLE 130 >gi|299771412|ref|YP_003733438.1| NADH dehydrogenase subunit I [Acinetobacter sp. DR1] gi|298701500|gb|ADI92065.1| NADH dehydrogenase subunit I [Acinetobacter sp. DR1] Length = 180 Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 52/135 (38%), Positives = 72/135 (53%), Gaps = 3/135 (2%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGS--TSPRFRGEHALRRYPNGEERCIACKLCE 70 V + F+ + + + TI YP PRFRG L R P+GEERC+AC LC Sbjct: 8 FGSIVRSLFMVFTHVTRKRDTILYPEVPAEQIVPPRFRGRIVLTRDPDGEERCVACNLCA 67 Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 CP I+++ DG + I+ +CI+CG+C+EACP AI P+FE Sbjct: 68 VACPVGCISLQKAE-TEDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQLTPDFELGEYV 126 Query: 131 RQELYYDKERLLNNG 145 RQ+L Y+KE LL +G Sbjct: 127 RQDLVYEKENLLISG 141 >gi|255318323|ref|ZP_05359558.1| 4Fe-4S binding domain protein [Acinetobacter radioresistens SK82] gi|262379067|ref|ZP_06072223.1| NADH-plastoquinone oxidoreductase, I subunit [Acinetobacter radioresistens SH164] gi|255304635|gb|EET83817.1| 4Fe-4S binding domain protein [Acinetobacter radioresistens SK82] gi|262298524|gb|EEY86437.1| NADH-plastoquinone oxidoreductase, I subunit [Acinetobacter radioresistens SH164] Length = 180 Score = 120 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 50/133 (37%), Positives = 72/133 (54%), Gaps = 3/133 (2%) Query: 15 EFVGAFFLCLRYFFKAKTTINYPFEKGS--TSPRFRGEHALRRYPNGEERCIACKLCEAI 72 V ++ + + + TI YP PR+RG L R P+GEERC+AC LC Sbjct: 10 SIVRTLWMVFTHVGRKRDTILYPEVPAEQIVPPRYRGRIILTRDPDGEERCVACNLCAVA 69 Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 CP I+++ + DG + I+ +CI+CG+C+EACP AI P+FE RQ Sbjct: 70 CPVGCISLQKAEK-EDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQLTPDFELGEYVRQ 128 Query: 133 ELYYDKERLLNNG 145 +L Y+KE LL +G Sbjct: 129 DLVYEKEHLLISG 141 >gi|322421842|ref|YP_004201065.1| NADH-quinone oxidoreductase subunit I [Geobacter sp. M18] gi|320128229|gb|ADW15789.1| NADH-quinone oxidoreductase, chain I [Geobacter sp. M18] Length = 132 Score = 120 bits (301), Expect = 5e-26, Method: Composition-based stats. Identities = 52/128 (40%), Positives = 74/128 (57%), Gaps = 2/128 (1%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + + + FK T+ YP E+ P FRG HAL + +C+AC LC +CPA Sbjct: 5 LIKGLQITISHMFKKPVTLQYPTERPEIKPGFRGLHALNVSH-DKAKCVACYLCPTVCPA 63 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 + IT+E+G + + +Y+IDM++CI+CG C EACPVDAI FE A +R + Sbjct: 64 KCITVEAGED-ENHDKYAAKYEIDMLRCIFCGYCVEACPVDAIRMTEEFELANYSRADFT 122 Query: 136 YDKERLLN 143 Y KERLL Sbjct: 123 YTKERLLE 130 >gi|110637779|ref|YP_677986.1| NADH dehydrogenase I subunit I [Cytophaga hutchinsonii ATCC 33406] gi|123163631|sp|Q11VC0|NUOI_CYTH3 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|110280460|gb|ABG58646.1| NADH dehydrogenase subunit I [Cytophaga hutchinsonii ATCC 33406] Length = 175 Score = 120 bits (301), Expect = 6e-26, Method: Composition-based stats. Identities = 49/143 (34%), Positives = 75/143 (52%), Gaps = 6/143 (4%) Query: 7 NVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIAC 66 + +++ V + L + FK K TI YP + + +RG+H L+R G E C AC Sbjct: 17 FMERIYIPSIVSGMMITLSHLFKKKATIQYPEVQREFAFVYRGKHILKRDEQGRENCTAC 76 Query: 67 KLCEAICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 LC CPA+AITI + R + Y+I+M++CI+CGLC+EACP DA+ Sbjct: 77 GLCAVSCPAEAITIIADERKKGEEHLYKEEKYASLYEINMLRCIFCGLCEEACPKDAVYL 136 Query: 121 GPNFEFATETRQELYYDKERLLN 143 A R++ Y K++L+ Sbjct: 137 TEELVPAQYNRKDFIYGKDKLVQ 159 >gi|149280562|ref|ZP_01886678.1| NADH dehydrogenase I chain I [Pedobacter sp. BAL39] gi|149228677|gb|EDM34080.1| NADH dehydrogenase I chain I [Pedobacter sp. BAL39] Length = 167 Score = 120 bits (301), Expect = 6e-26, Method: Composition-based stats. Identities = 49/139 (35%), Positives = 74/139 (53%), Gaps = 6/139 (4%) Query: 11 LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70 ++L + + FK + TI YP + S FRG H+L+R +G ERC AC LC Sbjct: 22 MYLPAIAKGLTITFSHLFKKEATIRYPEVQREFSTNFRGMHSLKRDEDGRERCTACGLCA 81 Query: 71 AICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 CPA+AIT+ + R + Y+I+M++CI+CGLC+EACP +AI Sbjct: 82 LSCPAEAITMIAAERKPEEKQLYREEKYASVYEINMLRCIFCGLCEEACPKEAIYLDGPI 141 Query: 125 EFATETRQELYYDKERLLN 143 A R++ Y K++L+ Sbjct: 142 VPADYLRKDFIYGKDKLVE 160 >gi|328953785|ref|YP_004371119.1| NAD(P)H-quinone oxidoreductase subunit I [Desulfobacca acetoxidans DSM 11109] gi|328454109|gb|AEB09938.1| NAD(P)H-quinone oxidoreductase subunit I [Desulfobacca acetoxidans DSM 11109] Length = 134 Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats. Identities = 46/126 (36%), Positives = 66/126 (52%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + TI YP E+ S RFRG L+ + NG+ +C+AC LC+ +CP+ Sbjct: 5 LLKGLGTTFKALISKPITIQYPEERRPVSDRFRGRPELQLHENGKVKCVACTLCKTVCPS 64 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 QAI G + +R++ID+ +CI+CG CQEACP AI +E A + L Sbjct: 65 QAILAIEAAEGTYGEKYPIRFEIDLTRCIFCGFCQEACPKAAIALNKEYELAQYDKSALL 124 Query: 136 YDKERL 141 YD E L Sbjct: 125 YDLEML 130 >gi|291280349|ref|YP_003497184.1| NADH-quinone oxidoreductase subunit I [Deferribacter desulfuricans SSM1] gi|290755051|dbj|BAI81428.1| NADH-quinone oxidoreductase, I subunit [Deferribacter desulfuricans SSM1] Length = 153 Score = 120 bits (301), Expect = 7e-26, Method: Composition-based stats. Identities = 48/148 (32%), Positives = 81/148 (54%), Gaps = 1/148 (0%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + ++F E + + L++ FK T YP+E RFRG H ++ +G Sbjct: 1 MAKNKNIFDYVFFTEILQGMGVTLKHMFKKPVTYKYPYEATPIFERFRGVHYMKTDEDGN 60 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 +C+ C LCE +CP++ I IE+ +G R +Y+I++ +CIYCG C+EACPVDAI Sbjct: 61 PKCVGCYLCERVCPSECIHIETD-AGPNGERLIRKYEIELDRCIYCGFCEEACPVDAIHM 119 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRW 148 G +++ TR+ + + L++ + Sbjct: 120 GRSYDVVRPTREGYRVNMKFLVDKYKEY 147 >gi|284042623|ref|YP_003392963.1| NADH-quinone oxidoreductase, chain I [Conexibacter woesei DSM 14684] gi|283946844|gb|ADB49588.1| NADH-quinone oxidoreductase, chain I [Conexibacter woesei DSM 14684] Length = 177 Score = 120 bits (300), Expect = 7e-26, Method: Composition-based stats. Identities = 47/137 (34%), Positives = 65/137 (47%), Gaps = 6/137 (4%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE-ERCIACKLCEA 71 E + + YP EK PRFRG H L R+ + + E+C+ C LC A Sbjct: 28 FGETLRGLKTTFGRMLEKPVVYEYPEEKVPVYPRFRGRHKLHRFEDSKLEKCVGCSLCAA 87 Query: 72 ICPAQAIT-----IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 CPA I R G R Y+I++ +CI+CG C+ ACP DAI G ++E Sbjct: 88 ACPADCIRVVAAENTPEHRVSAGERYAAVYEINLSRCIFCGYCEVACPFDAITMGHDYEM 147 Query: 127 ATETRQELYYDKERLLN 143 + R +L + KE LL Sbjct: 148 SDYNRDDLIFTKEMLLA 164 >gi|256078649|ref|XP_002575607.1| NADH-ubiquinone oxidoreductase [Schistosoma mansoni] gi|238660849|emb|CAZ31840.1| NADH-ubiquinone oxidoreductase 1, chain, putative [Schistosoma mansoni] Length = 169 Score = 120 bits (300), Expect = 7e-26, Method: Composition-based stats. Identities = 82/120 (68%), Positives = 89/120 (74%), Gaps = 1/120 (0%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 F +L L + + L FK T+NYPFEKG SPRFRGEHALRRYP+GEERC Sbjct: 48 FENVTRWLILADILRGLRLTFGMIFKEPATLNYPFEKGPLSPRFRGEHALRRYPSGEERC 107 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAITIE+ PR G+RRT RYDIDM KCIYCG CQEACPVDAIVE N Sbjct: 108 IACKLCEAICPAQAITIEAEPRAD-GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEVTN 166 >gi|312131902|ref|YP_003999242.1| NADH dehydrogenase subunit i [Leadbetterella byssophila DSM 17132] gi|311908448|gb|ADQ18889.1| NADH dehydrogenase subunit I [Leadbetterella byssophila DSM 17132] Length = 183 Score = 120 bits (300), Expect = 7e-26, Method: Composition-based stats. Identities = 54/154 (35%), Positives = 81/154 (52%), Gaps = 8/154 (5%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 V +L + L++FF K TI YP +K P FRG H L+R G ERC A Sbjct: 16 NVVEKTYLPGVFKGMAITLKHFFSPKPTIRYPEQKRYLGPVFRGHHILKRDEQGRERCTA 75 Query: 66 CKLCEAICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 C LC CPA+AI++ + R + Y+I+M++CI+CGLC+EACP AI Sbjct: 76 CGLCAVACPAEAISMVAAERVKGEEHLYREEKYAAAYEINMLRCIFCGLCEEACPKQAIY 135 Query: 120 EGPN-FEFATETRQELYYDKERLLNN-GDRWESE 151 + F R+++ Y K++L+ + +R+ E Sbjct: 136 LRHDKFVPVFTGREDVIYGKDQLVEDMNERYNRE 169 >gi|332754929|gb|EGJ85294.1| NADH-quinone oxidoreductase, chain I family protein [Shigella flexneri 4343-70] Length = 162 Score = 120 bits (300), Expect = 8e-26, Method: Composition-based stats. Identities = 51/120 (42%), Positives = 68/120 (56%), Gaps = 1/120 (0%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 + F + T YP E PR+RG L R P+GEERC+AC LC CP I+++ Sbjct: 5 HAFAKRETRMYPEEPVYLPPRYRGRIVLTRDPDGEERCVACNLCAVACPVGCISLQKAE- 63 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNG 145 DG + I+ +CI+CGLC+EACP AI P+FE RQ+L Y+KE LL +G Sbjct: 64 TKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDFEMGEYKRQDLVYEKEDLLISG 123 >gi|325954442|ref|YP_004238102.1| NAD(P)H-quinone oxidoreductase subunit I [Weeksella virosa DSM 16922] gi|323437060|gb|ADX67524.1| NAD(P)H-quinone oxidoreductase subunit I [Weeksella virosa DSM 16922] Length = 166 Score = 120 bits (300), Expect = 8e-26, Method: Composition-based stats. Identities = 54/149 (36%), Positives = 76/149 (51%), Gaps = 10/149 (6%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + ++L + +++FF K TINYP EK SP FRG H L R G Sbjct: 16 MNFWEK----IYLVAIFKGLMITIKHFFMKKQTINYPEEKRPFSPVFRGLHILNRDEEGR 71 Query: 61 ERCIACKLCEAICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQEACP 114 E C AC LC CPA+AIT+E+ R + +Y+I+M++CI+CG C+EACP Sbjct: 72 ENCTACGLCALACPAEAITMEAAERLPGEEHLYREEKYAAKYEINMLRCIFCGFCEEACP 131 Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLN 143 DA+ + R+ Y K+ LL Sbjct: 132 KDAVYLSQTVPPPSFDRKNFVYGKQDLLI 160 >gi|255019946|ref|ZP_05292020.1| NADH-ubiquinone oxidoreductase chain I [Acidithiobacillus caldus ATCC 51756] gi|254970605|gb|EET28093.1| NADH-ubiquinone oxidoreductase chain I [Acidithiobacillus caldus ATCC 51756] Length = 173 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 54/133 (40%), Positives = 76/133 (57%), Gaps = 1/133 (0%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 L+ ++ F+ LR + T++YP E+ PR+RG L R P+G+ERC+AC+LC A+ Sbjct: 5 LRSWIVGFWTTLRQLGRWPVTLSYPEEQPQLPPRWRGRPVLTRDPDGDERCVACELCSAV 64 Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 CP Q I +E R G R + I+ +CIYCGLC+EACP AI F F + R Sbjct: 65 CPTQCIELEGDDRPD-GRRYARTFRINFSRCIYCGLCEEACPTLAIQLLEEFAFGKDRRA 123 Query: 133 ELYYDKERLLNNG 145 + Y K LL +G Sbjct: 124 DFVYHKAALLIDG 136 >gi|309785015|ref|ZP_07679648.1| NADH-quinone oxidoreductase, chain I family protein [Shigella dysenteriae 1617] gi|308927385|gb|EFP72859.1| NADH-quinone oxidoreductase, chain I family protein [Shigella dysenteriae 1617] Length = 162 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 51/120 (42%), Positives = 68/120 (56%), Gaps = 1/120 (0%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 + F + T YP E PR+RG L R P+GEERC+AC LC CP I+++ Sbjct: 5 HAFAKRETRMYPEEPVYLPPRYRGRIVLTRDPDGEERCVACNLCAVACPVGCISLQKTE- 63 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNG 145 DG + I+ +CI+CGLC+EACP AI P+FE RQ+L Y+KE LL +G Sbjct: 64 TKDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDFEMGEYKRQDLVYEKEDLLISG 123 >gi|197120279|ref|YP_002140706.1| NADH dehydrogenase I subunit I [Geobacter bemidjiensis Bem] gi|253702587|ref|YP_003023776.1| NADH-quinone oxidoreductase, chain I [Geobacter sp. M21] gi|197089639|gb|ACH40910.1| NADH dehydrogenase I, I subunit [Geobacter bemidjiensis Bem] gi|251777437|gb|ACT20018.1| NADH-quinone oxidoreductase, chain I [Geobacter sp. M21] Length = 132 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 51/128 (39%), Positives = 74/128 (57%), Gaps = 2/128 (1%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + L + FK T+ YP E+ + FRG HAL + +C+AC LC +CPA Sbjct: 5 LIKGLQITLSHMFKKPVTLQYPTERPQIANTFRGLHALNVSH-DKAKCVACYLCPTVCPA 63 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 + IT+E+G + + +Y+IDM++CI+CG C EACPVDAI FE A +R + Sbjct: 64 KCITVEAGEDQNH-DKYAAKYEIDMLRCIFCGYCVEACPVDAIRMTEQFELANYSRADFT 122 Query: 136 YDKERLLN 143 + KERLL Sbjct: 123 FTKERLLE 130 >gi|284039950|ref|YP_003389880.1| NADH-quinone oxidoreductase, chain I [Spirosoma linguale DSM 74] gi|283819243|gb|ADB41081.1| NADH-quinone oxidoreductase, chain I [Spirosoma linguale DSM 74] Length = 188 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 53/146 (36%), Positives = 80/146 (54%), Gaps = 8/146 (5%) Query: 11 LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70 ++L VG + + +FF+ K TI YP K P +RG H L+R G ERC AC LC Sbjct: 21 MYLPAIVGGLAITISHFFRKKPTIQYPEVKKYLGPIYRGHHILKRDEQGRERCTACGLCA 80 Query: 71 AICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN- 123 CPA+AI++ + R + Y+I+M++CI+CGLC+EACP A+ + Sbjct: 81 VACPAEAISMVAAERKKGEENLYREEKYAAVYEINMLRCIFCGLCEEACPKQAVYLRHDR 140 Query: 124 FEFATETRQELYYDKERLLNN-GDRW 148 + R ++ Y K+RL+ N DR+ Sbjct: 141 MVPVFQERDDVIYGKDRLVENMNDRY 166 >gi|78224537|ref|YP_386284.1| NADH-quinone oxidoreductase, chain I [Geobacter metallireducens GS-15] gi|110287757|sp|Q39QB5|NUOI2_GEOMG RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName: Full=NADH dehydrogenase I subunit I 2; AltName: Full=NDH-1 subunit I 2 gi|78195792|gb|ABB33559.1| NADH dehydrogenase subunit I [Geobacter metallireducens GS-15] Length = 131 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 51/128 (39%), Positives = 76/128 (59%), Gaps = 2/128 (1%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + L++ F T+ YP E+ + SP FRG HAL+ + + +C+ C LC +CPA Sbjct: 5 LINGLKITLKHMFMKPVTLQYPDERPTPSPNFRGLHALKVSHS-KAKCVCCYLCPTVCPA 63 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 + IT+E+G + RY+IDM++CI+CG C EACPVDA+ FE A R++ Sbjct: 64 KCITVEAGEDQEH-NKYAERYEIDMLRCIFCGYCVEACPVDALKMTGEFELANYKREDFV 122 Query: 136 YDKERLLN 143 + KERLL Sbjct: 123 FVKERLLE 130 >gi|39995455|ref|NP_951406.1| NADH dehydrogenase I subunit I [Geobacter sulfurreducens PCA] gi|81703471|sp|Q74GA0|NUOI1_GEOSL RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName: Full=NADH dehydrogenase I subunit I 1; AltName: Full=NDH-1 subunit I 1 gi|39982218|gb|AAR33679.1| NADH dehydrogenase I, I subunit [Geobacter sulfurreducens PCA] gi|298504454|gb|ADI83177.1| NADH dehydrogenase I, I subunit [Geobacter sulfurreducens KN400] Length = 132 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 52/128 (40%), Positives = 77/128 (60%), Gaps = 2/128 (1%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + L++ F T+ YP E+ + SP FRG HAL+ + + +C+AC LC +CPA Sbjct: 5 LINGLKITLKHMFMKPVTLQYPDERPTPSPNFRGLHALKVSHD-KAKCVACYLCPTVCPA 63 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 + IT+E+G + RY+IDM++CI+CG C EACPVDA+ FE A R++ Sbjct: 64 KCITVEAGEDATH-DKYAERYEIDMLRCIFCGYCVEACPVDALKMTGQFELANYKREDFI 122 Query: 136 YDKERLLN 143 + KERLL Sbjct: 123 FVKERLLE 130 >gi|294506393|ref|YP_003570451.1| NADH dehydrogenase I, I subunit [Salinibacter ruber M8] gi|294342721|emb|CBH23499.1| NADH dehydrogenase I, I subunit [Salinibacter ruber M8] Length = 239 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 41/144 (28%), Positives = 68/144 (47%), Gaps = 2/144 (1%) Query: 10 FLFLKEFVGAFFLCL-RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKL 68 L+L E R + T YP E+ +RG L + RC++C L Sbjct: 21 SLYLPELFKGLGYSFDRMANEPTYTFEYPEEQWYPPDSYRGRPVLVE-EDDRPRCVSCNL 79 Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 C CP AI+++S + R ++I+M++CIYCG C+E CP +AIV + Sbjct: 80 CARACPPLAISMQSKEVNNVKEREPEWFEINMLRCIYCGFCEEVCPEEAIVMSKEHDLTF 139 Query: 129 ETRQELYYDKERLLNNGDRWESEI 152 ++R E +D + LL ++ + + Sbjct: 140 QSRDEAVFDLDDLLRPSEQMQDRL 163 >gi|157273354|gb|ABV27253.1| NADH-quinone oxidoreductase subunit 9 [Candidatus Chloracidobacterium thermophilum] Length = 168 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 65/152 (42%), Positives = 77/152 (50%), Gaps = 8/152 (5%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + L Y K K T YP PRFRGEH L R NG+ERC+AC LC A CPA Sbjct: 18 IAQGMAVTLSYIPKQKLTRQYPDVPVELYPRFRGEHYLARDENGKERCVACFLCAAACPA 77 Query: 76 QAITIES-------GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 AI IE+ R R Y+ID +CI CG C EACP DAI G NFE A Sbjct: 78 DAIYIEADEDLRPYEERPGVEPRYARVYNIDYGRCILCGYCVEACPKDAIKHGHNFEMAV 137 Query: 129 ETRQELYYDKERLLNNGDRWESEIVRNIVTDS 160 +L DK+ LL+N +R E I +D+ Sbjct: 138 TNFADLVKDKQYLLSNLER-EKTRNLTIRSDA 168 >gi|239905974|ref|YP_002952713.1| NADH-quinone oxidoreductase chain I [Desulfovibrio magneticus RS-1] gi|239795838|dbj|BAH74827.1| NADH-quinone oxidoreductase chain I [Desulfovibrio magneticus RS-1] Length = 185 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 48/120 (40%), Positives = 65/120 (54%), Gaps = 1/120 (0%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 L + F+ T YP K R RG L R P+G ERC+AC LC CP I+++S Sbjct: 26 TLTHLFRKPVTEQYPEYKRPMPARTRGRIILTRSPDGNERCVACYLCSGACPVNCISMQS 85 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLL 142 +G RR + I+ +CIYCGLC+EACP A+ P F F + + Y+KE+LL Sbjct: 86 EE-GENGRRRAAWFRINFARCIYCGLCEEACPTLALQLTPEFAFCKDDIADFVYEKEQLL 144 >gi|170727211|ref|YP_001761237.1| NADH-quinone oxidoreductase subunit I [Shewanella woodyi ATCC 51908] gi|226737416|sp|B1KJV5|NUOI_SHEWM RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|169812558|gb|ACA87142.1| NADH-quinone oxidoreductase, chain I [Shewanella woodyi ATCC 51908] Length = 171 Score = 119 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 51/129 (39%), Positives = 70/129 (54%), Gaps = 1/129 (0%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + L++ F T+ YP +K SPR+RG L R P+GEERC+AC LC CP Sbjct: 5 IRTLITILKHTFTRADTVEYPEQKPYLSPRYRGRIVLTRDPDGEERCVACNLCSVACPVD 64 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 I++ + DG + I+ +CI CG C+EACP AI P+ E A RQ L + Sbjct: 65 CISVVKTEK-EDGRWEAESFTINFSRCIMCGFCEEACPTHAIQLTPDVEMAEYDRQNLVF 123 Query: 137 DKERLLNNG 145 +KE LL +G Sbjct: 124 EKEHLLISG 132 >gi|330889653|gb|EGH22314.1| NADH dehydrogenase subunit I [Pseudomonas syringae pv. mori str. 301020] Length = 153 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 51/113 (45%), Positives = 68/113 (60%), Gaps = 1/113 (0%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 T+ YP E+ PR+RG L R P+GEERC+AC LC CP I+++ DG Sbjct: 3 TLQYPEEQVYLPPRYRGRIVLTRDPDGEERCVACNLCAVACPVGCISLQKAE-TEDGRWY 61 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNG 145 + I+ +CI+CGLC+EACP AI P+FE A RQ+L Y+KE LL +G Sbjct: 62 PDFFRINFSRCIFCGLCEEACPTTAIQLTPDFEMADFKRQDLVYEKEDLLISG 114 >gi|313206207|ref|YP_004045384.1| NADH dehydrogenase subunit i [Riemerella anatipestifer DSM 15868] gi|312445523|gb|ADQ81878.1| NADH dehydrogenase subunit I [Riemerella anatipestifer DSM 15868] gi|325336346|gb|ADZ12620.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Riemerella anatipestifer RA-GD] Length = 175 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 50/139 (35%), Positives = 73/139 (52%), Gaps = 6/139 (4%) Query: 12 FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71 +L V + L++FFK +TI YP ++ + +RG H L+R G ERC AC LC Sbjct: 22 YLPAIVKGMSITLKHFFKKDSTIQYPEQEKPRAKVWRGRHVLKRDDEGRERCTACGLCAV 81 Query: 72 ICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CPA+AIT+ S R + Y+I+M++CI+CGLC+EACP AI Sbjct: 82 ACPAEAITMTSAERTKEEKHLYREEKYASTYEINMLRCIFCGLCEEACPKSAIYLTDRLV 141 Query: 126 FATETRQELYYDKERLLNN 144 R Y K++L+ + Sbjct: 142 DVESNRGSFVYGKDKLVED 160 >gi|121281900|gb|ABM53531.1| putative NADH-ubiquinone oxidoreductase [uncultured bacterium CBNPD1 BAC clone 543] Length = 185 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 54/157 (34%), Positives = 76/157 (48%), Gaps = 20/157 (12%) Query: 10 FLFLKEFVGAFFLCLRYFF----------KAKTTINYPFEKGS---------TSPRFRGE 50 LF+ + +R+F K + YP +K P FRG Sbjct: 21 SLFVPSIIKGLGTTMRHFVENFGRNGSNAKNIWVVQYPEQKRDDRPVEQGGQFRPTFRGV 80 Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRC-HDGTRRTVRYDIDMIKCIYCGLC 109 H L + +G RC+AC +C CPA I I + D + ++DID ++CIYCG+C Sbjct: 81 HRLNKDEDGRVRCVACFMCATACPANCIHIVAEESPWEDREKYPKQFDIDELRCIYCGMC 140 Query: 110 QEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGD 146 +EACPVDAI P++E TR EL +DK +LL D Sbjct: 141 EEACPVDAIELTPHYEVTGLTRAELIFDKSKLLEIYD 177 >gi|189426179|ref|YP_001953356.1| NADH-quinone oxidoreductase, chain I [Geobacter lovleyi SZ] gi|189422438|gb|ACD96836.1| NADH-quinone oxidoreductase, chain I [Geobacter lovleyi SZ] Length = 135 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 52/131 (39%), Positives = 77/131 (58%), Gaps = 2/131 (1%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + + L + FK T+ YP E+ + RFRG HAL+ N + +C+AC LC + Sbjct: 5 FTPIMQGMKITLGHVFKKPVTLMYPDERPKVAERFRGLHALKVSHN-KAKCVACYLCPTV 63 Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 CPA+ IT+E+G + + +Y+IDM++CI+CG C EACPVDA+ FE A R+ Sbjct: 64 CPAKCITVEAGEDANH-DKFAAKYEIDMLRCIFCGYCVEACPVDALKMTGEFELANYRRE 122 Query: 133 ELYYDKERLLN 143 + + KERLL Sbjct: 123 DFVFTKERLLE 133 >gi|89073310|ref|ZP_01159840.1| NADH dehydrogenase I, I subunit [Photobacterium sp. SKA34] gi|89051020|gb|EAR56484.1| NADH dehydrogenase I, I subunit [Photobacterium sp. SKA34] Length = 177 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 54/133 (40%), Positives = 81/133 (60%), Gaps = 1/133 (0%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 L+E GAF +++ + + T+ YP K R+RG L R P+G+ERC+AC LC ++ Sbjct: 7 LQEVTGAFAATIKHVWAPRDTVCYPEVKPDLPERWRGRIVLTRDPDGDERCVACYLCSSV 66 Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 CPA AITI+ R D R +++D +CI+CG+C+EACP +I +FE +R Sbjct: 67 CPANAITIQGAER-EDERRYAKTFELDFSRCIFCGMCEEACPTLSIQCTTDFEMGKYSRD 125 Query: 133 ELYYDKERLLNNG 145 +L Y+KE LL +G Sbjct: 126 KLLYEKEDLLIDG 138 >gi|271962239|ref|YP_003336435.1| formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I)-like protein [Streptosporangium roseum DSM 43021] gi|270505414|gb|ACZ83692.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I)-like protein [Streptosporangium roseum DSM 43021] Length = 417 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 43/134 (32%), Positives = 57/134 (42%), Gaps = 13/134 (9%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 V + LR+ T YP + PR RG AL EE C C LC CP Sbjct: 9 LVKGLSVTLRHMLSRSVTQQYPEVRPDLPPRSRGVIALV-----EENCTVCMLCARECPD 63 Query: 76 QAITIESGPRC--------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 I I+S R+ ID C+YCG+C E CP DA+ P FE+A Sbjct: 64 WCIYIDSHKETLPAPEGGRPRARNMLDRFAIDFSLCMYCGICIEVCPFDALFWSPEFEYA 123 Query: 128 TETRQELYYDKERL 141 + L ++K++L Sbjct: 124 EGDIRNLVHEKDKL 137 >gi|308185016|ref|YP_003929149.1| NADH dehydrogenase subunit I [Helicobacter pylori SJM180] gi|308060936|gb|ADO02832.1| NADH dehydrogenase subunit I [Helicobacter pylori SJM180] Length = 220 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62 F+ + + L ++ FF TI+YP E+ SPR+R H L R +G ER Sbjct: 22 FKDTIKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHHLQRLLDSGSER 81 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C LCE IC + I I + D ++ Y I++ +CIYCGLC E CP AIV G Sbjct: 82 CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140 Query: 123 NFEFATETRQE 133 FE A+ R + Sbjct: 141 RFENASTQRSQ 151 >gi|163781781|ref|ZP_02176781.1| NADH dehydrogenase I chain I [Hydrogenivirga sp. 128-5-R1-1] gi|159883001|gb|EDP76505.1| NADH dehydrogenase I chain I [Hydrogenivirga sp. 128-5-R1-1] Length = 201 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 43/167 (25%), Positives = 76/167 (45%), Gaps = 17/167 (10%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEH---------- 51 + + +F +F+ + LR F+ T YP EK + RFRG H Sbjct: 9 KDYLNIAEAIFFIDFLKGLSVTLRNLFRKPITTEYPKEKLTPPKRFRGAHGHFVWDGSEP 68 Query: 52 -------ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 Y G+ RC+AC +C+ CP + + DG+++ R+D++++ C+ Sbjct: 69 DSLKAIEKFMSYERGKSRCVACYMCQTACPMPTLFRIEAVQLPDGSKKVTRFDMNLLNCL 128 Query: 105 YCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 +CGLC +ACPV + +E A +R++ +RL +G + Sbjct: 129 FCGLCVDACPVGCLTMTDLYELAGYSRRDEVLRMDRLEEHGIDFTKR 175 >gi|317011468|gb|ADU85215.1| NADH dehydrogenase subunit I [Helicobacter pylori SouthAfrica7] Length = 220 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62 F+ + + L ++ FF TI+YP E+ SPR+R H L R +G ER Sbjct: 22 FKDTIKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHHLQRLLDSGSER 81 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C LCE IC + I I + D ++ Y I++ +CIYCGLC E CP AIV G Sbjct: 82 CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140 Query: 123 NFEFATETRQE 133 FE A+ R + Sbjct: 141 RFENASTQRSQ 151 >gi|307637939|gb|ADN80389.1| NADH-ubiquinone oxidoreductase chain I [Helicobacter pylori 908] gi|325996543|gb|ADZ51948.1| NADH-ubiquinone oxidoreductase chain I [Helicobacter pylori 2018] gi|325998132|gb|ADZ50340.1| NADH-ubiquinone oxidoreductase chain I [Helicobacter pylori 2017] Length = 220 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62 F+ + + L ++ FF TI+YP E+ SPR+R H L R +G ER Sbjct: 22 FKDTIKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHHLQRLLDSGSER 81 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C LCE IC + I I + D ++ Y I++ +CIYCGLC E CP AIV G Sbjct: 82 CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140 Query: 123 NFEFATETRQE 133 FE A+ R + Sbjct: 141 RFENASTQRSQ 151 >gi|90579196|ref|ZP_01235006.1| NADH-quinone oxidoreductase, chain I [Vibrio angustum S14] gi|90440029|gb|EAS65210.1| NADH-quinone oxidoreductase, chain I [Vibrio angustum S14] Length = 177 Score = 118 bits (296), Expect = 3e-25, Method: Composition-based stats. Identities = 54/133 (40%), Positives = 81/133 (60%), Gaps = 1/133 (0%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 L+E GAF +++ + + T+ YP K R+RG L R P+G+ERC+AC LC ++ Sbjct: 7 LQEVTGAFAATIKHVWAPRDTVCYPEVKPDLPERWRGRIVLTRDPDGDERCVACYLCSSV 66 Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 CPA AITI+ R D R +++D +CI+CG+C+EACP +I +FE +R Sbjct: 67 CPANAITIQGAER-EDERRYAETFELDFSRCIFCGMCEEACPTLSIQCTTDFEMGKYSRD 125 Query: 133 ELYYDKERLLNNG 145 +L Y+KE LL +G Sbjct: 126 KLLYEKEDLLIDG 138 >gi|289548976|ref|YP_003473964.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermocrinis albus DSM 14484] gi|289182593|gb|ADC89837.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermocrinis albus DSM 14484] Length = 201 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 46/167 (27%), Positives = 76/167 (45%), Gaps = 17/167 (10%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEH---------- 51 + F V + +F+ + L+ K T NYP EK + RFRG H Sbjct: 9 KAFLNLVETVLFVDFIKGLSVTLKNLLKKPITTNYPLEKLTPPKRFRGAHGHFVWDGTEP 68 Query: 52 -------ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 + G+ RC+AC +C+ CP + + DGT++ VR+D++++ C+ Sbjct: 69 NSLKAIEKFMSFEKGKSRCVACYMCQTACPMPTLFRIEAVQMPDGTKKVVRFDMNLLNCL 128 Query: 105 YCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 +CGLC +ACPV + +E A +R+ E+L N W+ Sbjct: 129 FCGLCVDACPVGCLTMTDLYELAGYSRRNAVLRMEQLEKNAIDWKQR 175 >gi|308064046|gb|ADO05933.1| NADH dehydrogenase subunit I [Helicobacter pylori Sat464] Length = 220 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62 F+ + + L ++ FF TI+YP E+ SPR+R H L R +G ER Sbjct: 22 FKDTIKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHHLQRLLDSGSER 81 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C LCE IC + I I + D ++ Y I++ +CIYCGLC E CP AIV G Sbjct: 82 CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140 Query: 123 NFEFATETRQE 133 FE A+ R + Sbjct: 141 RFENASTQRSQ 151 >gi|255533955|ref|YP_003094327.1| NADH-quinone oxidoreductase subunit I [Pedobacter heparinus DSM 2366] gi|255346939|gb|ACU06265.1| NADH-quinone oxidoreductase, chain I [Pedobacter heparinus DSM 2366] Length = 165 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 51/139 (36%), Positives = 75/139 (53%), Gaps = 6/139 (4%) Query: 11 LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70 L+L + + +FFK + TI YP + S FRG H+L+R G ERC AC LC Sbjct: 22 LYLPAIAKGMAITISHFFKKEATIRYPEVEREFSTNFRGMHSLKRDEEGRERCTACGLCA 81 Query: 71 AICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 CPA+AIT+ + R + Y+I+M++CI+CGLC+EACP +AI Sbjct: 82 LSCPAEAITMIAAERKPEEKELYREEKYASVYEINMLRCIFCGLCEEACPKEAIYLDGPI 141 Query: 125 EFATETRQELYYDKERLLN 143 A R++ Y K++L+ Sbjct: 142 VPADYLRKDFIYGKDKLVE 160 >gi|91975813|ref|YP_568472.1| NADH dehydrogenase subunit I [Rhodopseudomonas palustris BisB5] gi|123735639|sp|Q13BG8|NUOI1_RHOPS RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName: Full=NADH dehydrogenase I subunit I 1; AltName: Full=NDH-1 subunit I 1 gi|91682269|gb|ABE38571.1| NADH-quinone oxidoreductase, chain I [Rhodopseudomonas palustris BisB5] Length = 171 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 50/134 (37%), Positives = 67/134 (50%), Gaps = 1/134 (0%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + ++ A R F T YP EK PR RG L R P+G+ERC+AC LC + Sbjct: 1 MIGWLEAMLRVGRKLFVKAETQLYPEEKPKLYPRSRGRIVLTRDPDGQERCVACNLCAVV 60 Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 CP I + DG + I+ +CI+CG C+EACP AI P+FE R Sbjct: 61 CPVGCIDLTKA-VADDGRWYPEHFRINFARCIFCGFCEEACPTSAIQLTPDFELGEWRRD 119 Query: 133 ELYYDKERLLNNGD 146 L Y+K LL +G+ Sbjct: 120 ALVYEKHDLLISGE 133 >gi|108563637|ref|YP_627953.1| NADH dehydrogenase subunit I [Helicobacter pylori HPAG1] gi|115502531|sp|Q1CRZ3|NUOI_HELPH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|107837410|gb|ABF85279.1| NADH-ubiquinone oxidoreductase chain I [Helicobacter pylori HPAG1] Length = 220 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62 F+ + + L ++ FF TI+YP E+ SPR+R H L R +G ER Sbjct: 22 FKDTIKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHHLQRLLDSGSER 81 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C LCE IC + I I + D ++ Y I++ +CIYCGLC E CP AIV G Sbjct: 82 CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140 Query: 123 NFEFATETRQE 133 FE A+ R + Sbjct: 141 RFENASTQRSQ 151 >gi|71892259|ref|YP_277993.1| NADH dehydrogenase subunit I [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|110287759|sp|Q492I3|NUOI_BLOPB RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|71796365|gb|AAZ41116.1| NADH dehydrogenase I chain I, 2Fe-2S ferredoxin-related [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 181 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 47/145 (32%), Positives = 74/145 (51%), Gaps = 4/145 (2%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M++ + + + + + ++ F + T YP SPR+RG L R +G Sbjct: 2 MKLKKVFID---IGSILRSIWMIGMQAFSKRETRMYPEVPYIPSPRYRGRIVLTRDSSGR 58 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERC+AC LC CP I+++ G G + I+ +CI+CG+C+EACP AI Sbjct: 59 ERCVACNLCAVACPVGCISLKKGESTD-GRWYPKFFRINFSRCIFCGMCEEACPTAAIQL 117 Query: 121 GPNFEFATETRQELYYDKERLLNNG 145 P+FE + R +L Y+K LL +G Sbjct: 118 TPDFEMSDFKRHDLVYEKSDLLISG 142 >gi|210135427|ref|YP_002301866.1| NADH dehydrogenase subunit I [Helicobacter pylori P12] gi|226737394|sp|B6JNA8|NUOI_HELP2 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|210133395|gb|ACJ08386.1| NADH-ubiquinone oxidoreductase chain I [Helicobacter pylori P12] Length = 220 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 51/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62 F+ V + L ++ FF TI+YP E+ SPR+R H L R +G ER Sbjct: 22 FKDTVKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHHLQRLLDSGSER 81 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C LCE IC + I I + D ++ Y I++ +CIYCGLC E CP AIV G Sbjct: 82 CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140 Query: 123 NFEFATETRQE 133 FE A+ R + Sbjct: 141 RFENASTQRSQ 151 >gi|208435162|ref|YP_002266828.1| NADH-ubiquinone oxidoreductase chain I [Helicobacter pylori G27] gi|226737395|sp|B5Z8R3|NUOI_HELPG RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|208433091|gb|ACI27962.1| NADH-ubiquinone oxidoreductase chain I [Helicobacter pylori G27] Length = 220 Score = 117 bits (294), Expect = 3e-25, Method: Composition-based stats. Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62 F+ + + L ++ FF TI+YP E+ SPR+R H L R +G ER Sbjct: 22 FKDTIKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHHLQRLLDSGSER 81 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C LCE IC + I I + D ++ Y I++ +CIYCGLC E CP AIV G Sbjct: 82 CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140 Query: 123 NFEFATETRQE 133 FE A+ R + Sbjct: 141 RFENASTQRSQ 151 >gi|15612254|ref|NP_223907.1| NADH dehydrogenase subunit I [Helicobacter pylori J99] gi|81555114|sp|Q9ZJV9|NUOI_HELPJ RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|4155779|gb|AAD06755.1| NADH oxidoreductase I [Helicobacter pylori J99] Length = 220 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62 F+ + + L ++ FF TI+YP E+ SPR+R H L R +G ER Sbjct: 22 FKDTIKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHHLQRLLDSGSER 81 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C LCE IC + I I + D ++ Y I++ +CIYCGLC E CP AIV G Sbjct: 82 CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140 Query: 123 NFEFATETRQE 133 FE A+ R + Sbjct: 141 RFENASTQRSQ 151 >gi|332674071|gb|AEE70888.1| NADH-quinone oxidoreductase subunit I [Helicobacter pylori 83] Length = 220 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62 F+ + + L ++ FF TI+YP E+ SPR+R H L R +G ER Sbjct: 22 FKDTLKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHHLQRLLDSGSER 81 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C LCE IC + I I + D ++ Y I++ +CIYCGLC E CP AIV G Sbjct: 82 CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140 Query: 123 NFEFATETRQE 133 FE A+ R + Sbjct: 141 RFENASTQRSQ 151 >gi|316935778|ref|YP_004110760.1| NADH-quinone oxidoreductase subunit I [Rhodopseudomonas palustris DX-1] gi|315603492|gb|ADU46027.1| NADH-quinone oxidoreductase, chain I [Rhodopseudomonas palustris DX-1] Length = 173 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 47/131 (35%), Positives = 67/131 (51%), Gaps = 1/131 (0%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 ++ A R F T YP EK PR RG L R P+G+ERC+AC LC +CP Sbjct: 6 WLEALLRVGRKLFVKPETQLYPEEKPKLYPRARGRIVLTRDPDGQERCVACNLCATVCPV 65 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 I + DG + ++ +CI+CG C++ACP AI P++E + R L Sbjct: 66 GCIDLSKA-VADDGRWYPEHFRVNFARCIFCGFCEDACPTAAIQLTPDYELSEWRRDALV 124 Query: 136 YDKERLLNNGD 146 Y+K LL +G+ Sbjct: 125 YEKHDLLISGE 135 >gi|317178438|dbj|BAJ56226.1| NADH dehydrogenase subunit I [Helicobacter pylori F30] Length = 220 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62 F+ + + L ++ FF TI+YP E+ SPR+R H L R +G ER Sbjct: 22 FKDTLKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHHLQRLLDSGSER 81 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C LCE IC + I I + D ++ Y I++ +CIYCGLC E CP AIV G Sbjct: 82 CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140 Query: 123 NFEFATETRQE 133 FE A+ R + Sbjct: 141 RFENASTQRSQ 151 >gi|217032331|ref|ZP_03437827.1| hypothetical protein HPB128_132g29 [Helicobacter pylori B128] gi|298735708|ref|YP_003728233.1| NADH dehydrogenase I subunit I [Helicobacter pylori B8] gi|216945997|gb|EEC24611.1| hypothetical protein HPB128_132g29 [Helicobacter pylori B128] gi|298354897|emb|CBI65769.1| NADH dehydrogenase I chain I [Helicobacter pylori B8] Length = 220 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62 F+ + + L ++ FF TI+YP E+ SPR+R H L R +G ER Sbjct: 22 FKDTIKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHNLQRLLDSGSER 81 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C LCE IC + I I + D ++ Y I++ +CIYCGLC E CP AIV G Sbjct: 82 CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140 Query: 123 NFEFATETRQE 133 FE A+ R + Sbjct: 141 RFENASTQRSQ 151 >gi|15645882|ref|NP_208060.1| NADH dehydrogenase subunit I [Helicobacter pylori 26695] gi|81341662|sp|O25858|NUOI_HELPY RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|2314433|gb|AAD08312.1| NADH-ubiquinone oxidoreductase, NQO9 subunit (NQO9) [Helicobacter pylori 26695] Length = 220 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 51/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62 F+ V + L ++ FF TI+YP E+ SPR+R H L R +G ER Sbjct: 22 FKDTVKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHNLQRLLDSGSER 81 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C LCE IC + I I + D ++ Y I++ +CIYCGLC E CP AIV G Sbjct: 82 CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140 Query: 123 NFEFATETRQE 133 FE A+ R + Sbjct: 141 RFENASTQRSQ 151 >gi|116749373|ref|YP_846060.1| NADH dehydrogenase subunit I [Syntrophobacter fumaroxidans MPOB] gi|156632695|sp|A0LJM3|NUOI2_SYNFM RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName: Full=NADH dehydrogenase I subunit I 2; AltName: Full=NDH-1 subunit I 2 gi|116698437|gb|ABK17625.1| NADH-quinone oxidoreductase, chain I [Syntrophobacter fumaroxidans MPOB] Length = 178 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 50/127 (39%), Positives = 66/127 (51%), Gaps = 1/127 (0%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + F+ T YP K + R R L R P+G ERC+AC LC A+CP Sbjct: 11 LASGFATTFVHLFRKPVTEEYPEVKRALPARTRAVIVLTRDPDGGERCVACYLCSAVCPV 70 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 I++++ R DG R + I+ +CIYCGLC+EACP AI P FE +L Sbjct: 71 SCISMQAAER-EDGRRHAAWFRINFARCIYCGLCEEACPTSAIQLTPFFETCERDILKLV 129 Query: 136 YDKERLL 142 Y+KE LL Sbjct: 130 YEKEDLL 136 >gi|317178011|dbj|BAJ55800.1| NADH dehydrogenase subunit I [Helicobacter pylori F16] Length = 220 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62 F+ + + L ++ FF TI+YP E+ SPR+R H L R +G ER Sbjct: 22 FKDTLKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHHLQRLLDSGSER 81 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C LCE IC + I I + D ++ Y I++ +CIYCGLC E CP AIV G Sbjct: 82 CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140 Query: 123 NFEFATETRQE 133 FE A+ R + Sbjct: 141 RFENASTQRSQ 151 >gi|315587159|gb|ADU41540.1| NADH-quinone oxidoreductase subunit I [Helicobacter pylori 35A] Length = 220 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62 F+ + + L ++ FF TI+YP E+ SPR+R H L R +G ER Sbjct: 22 FKDTLKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHHLQRLLDSGSER 81 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C LCE IC + I I + D ++ Y I++ +CIYCGLC E CP AIV G Sbjct: 82 CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140 Query: 123 NFEFATETRQE 133 FE A+ R + Sbjct: 141 RFENASTQRSQ 151 >gi|308062552|gb|ADO04440.1| NADH dehydrogenase subunit I [Helicobacter pylori Cuz20] Length = 220 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62 F+ + + L ++ FF TI+YP E+ SPR+R H L R +G ER Sbjct: 22 FKDTIKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHNLQRLLDSGSER 81 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C LCE IC + I I + D ++ Y I++ +CIYCGLC E CP AIV G Sbjct: 82 CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140 Query: 123 NFEFATETRQE 133 FE A+ R + Sbjct: 141 RFENASTQRSQ 151 >gi|217033589|ref|ZP_03439017.1| hypothetical protein HP9810_899g25 [Helicobacter pylori 98-10] gi|216943935|gb|EEC23369.1| hypothetical protein HP9810_899g25 [Helicobacter pylori 98-10] Length = 220 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62 F+ + + L ++ FF TI+YP E+ SPR+R H L R +G ER Sbjct: 22 FKDTLKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHHLQRLLDSGSER 81 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C LCE IC + I I + D ++ Y I++ +CIYCGLC E CP AIV G Sbjct: 82 CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140 Query: 123 NFEFATETRQE 133 FE A+ R + Sbjct: 141 RFENASTQRSQ 151 >gi|188528057|ref|YP_001910744.1| NADH dehydrogenase subunit I [Helicobacter pylori Shi470] gi|226737396|sp|B2UV32|NUOI_HELPS RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|188144297|gb|ACD48714.1| NADH dehydrogenase subunit I [Helicobacter pylori Shi470] Length = 220 Score = 117 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62 F+ + + L ++ FF TI+YP E+ SPR+R H L R +G ER Sbjct: 22 FKDTIKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHNLQRLLDSGSER 81 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C LCE IC + I I + D ++ Y I++ +CIYCGLC E CP AIV G Sbjct: 82 CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140 Query: 123 NFEFATETRQE 133 FE A+ R + Sbjct: 141 RFENASTQRSQ 151 >gi|308183378|ref|YP_003927505.1| NADH dehydrogenase subunit I [Helicobacter pylori PeCan4] gi|308065563|gb|ADO07455.1| NADH dehydrogenase subunit I [Helicobacter pylori PeCan4] Length = 220 Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats. Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62 F+ + + L ++ FF TI+YP E+ SPR+R H L R +G ER Sbjct: 22 FKDTIKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHNLQRLLDSGSER 81 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C LCE IC + I I + D ++ Y I++ +CIYCGLC E CP AIV G Sbjct: 82 CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140 Query: 123 NFEFATETRQE 133 FE A+ R + Sbjct: 141 RFENASTQRSQ 151 >gi|297380448|gb|ADI35335.1| NADH-quinone oxidoreductase, chain I [Helicobacter pylori v225d] Length = 220 Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats. Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62 F+ + + L ++ FF TI+YP E+ SPR+R H L R +G ER Sbjct: 22 FKDTIKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHNLQRLLDSGSER 81 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C LCE IC + I I + D ++ Y I++ +CIYCGLC E CP AIV G Sbjct: 82 CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140 Query: 123 NFEFATETRQE 133 FE A+ R + Sbjct: 141 RFENASTQRSQ 151 >gi|261838591|gb|ACX98357.1| NADH-ubiquinone oxidoreductase chain I [Helicobacter pylori 51] gi|317180994|dbj|BAJ58780.1| NADH dehydrogenase subunit I [Helicobacter pylori F32] Length = 220 Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats. Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62 F+ + + L ++ FF TI+YP E+ SPR+R H L R +G ER Sbjct: 22 FKDTLKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHHLQRLLDSGSER 81 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C LCE IC + I I + D ++ Y I++ +CIYCGLC E CP AIV G Sbjct: 82 CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140 Query: 123 NFEFATETRQE 133 FE A+ R + Sbjct: 141 RFENASTQRSQ 151 >gi|317013056|gb|ADU83664.1| NADH dehydrogenase subunit I [Helicobacter pylori Lithuania75] Length = 220 Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats. Identities = 51/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62 F+ V + L ++ FF TI+YP E+ SPR+R H L R +G ER Sbjct: 22 FKDTVKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHNLQRLLDSGSER 81 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C LCE IC + I I + D ++ Y I++ +CIYCGLC E CP AIV G Sbjct: 82 CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140 Query: 123 NFEFATETRQE 133 FE A+ R + Sbjct: 141 RFENASTQRSQ 151 >gi|207091606|ref|ZP_03239393.1| NADH dehydrogenase subunit I [Helicobacter pylori HPKX_438_AG0C1] Length = 220 Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats. Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62 F+ + + L ++ FF TI+YP E+ SPR+R H L R +G ER Sbjct: 22 FKDTIKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHNLQRLLDSGSER 81 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C LCE IC + I I + D ++ Y I++ +CIYCGLC E CP AIV G Sbjct: 82 CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140 Query: 123 NFEFATETRQE 133 FE A+ R + Sbjct: 141 RFENASTQRSQ 151 >gi|317009952|gb|ADU80532.1| NADH dehydrogenase subunit I [Helicobacter pylori India7] Length = 220 Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats. Identities = 51/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62 F+ V + L ++ FF TI+YP E+ SPR+R H L R +G ER Sbjct: 22 FKDTVKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHNLQRLLDSGSER 81 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C LCE IC + I I + D ++ Y I++ +CIYCGLC E CP AIV G Sbjct: 82 CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140 Query: 123 NFEFATETRQE 133 FE A+ R + Sbjct: 141 RFENASTQRSQ 151 >gi|315023108|gb|EFT36121.1| NADH-ubiquinone oxidoreductase chain I [Riemerella anatipestifer RA-YM] Length = 161 Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats. Identities = 50/139 (35%), Positives = 73/139 (52%), Gaps = 6/139 (4%) Query: 12 FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71 +L V + L++FFK +TI YP ++ + +RG H L+R G ERC AC LC Sbjct: 8 YLPAIVKGMSITLKHFFKKDSTIQYPEQEKPRAKVWRGRHVLKRDDEGRERCTACGLCAV 67 Query: 72 ICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CPA+AIT+ S R + Y+I+M++CI+CGLC+EACP AI Sbjct: 68 ACPAEAITMTSAERTKEEKHLYREEKYASTYEINMLRCIFCGLCEEACPKSAIYLTDRLV 127 Query: 126 FATETRQELYYDKERLLNN 144 R Y K++L+ + Sbjct: 128 DVESNRGSFVYGKDKLVED 146 >gi|71065158|ref|YP_263885.1| NADH dehydrogenase subunit I [Psychrobacter arcticus 273-4] gi|110287768|sp|Q4FU57|NUOI_PSYA2 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|71038143|gb|AAZ18451.1| NADH dehydrogenase I, subunit I [Psychrobacter arcticus 273-4] Length = 182 Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats. Identities = 53/133 (39%), Positives = 75/133 (56%), Gaps = 1/133 (0%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 L V + ++ + + + TI YP PRFRG L R P+G+ERC+AC LC Sbjct: 12 LFTIVRSMWMVNSHAIRPRDTILYPEVPVPVPPRFRGRIILSRDPDGDERCVACNLCAVA 71 Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 CP I+++ R DG + I+ +CI+CGLC+EACP AI P+FE + RQ Sbjct: 72 CPVGCISLQKAER-EDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQMTPDFEMSEYVRQ 130 Query: 133 ELYYDKERLLNNG 145 +L Y+KE LL +G Sbjct: 131 DLVYEKEHLLISG 143 >gi|285808569|gb|ADC36090.1| NADH-quinone oxidoreductase subunit 9 [uncultured bacterium 164] Length = 173 Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats. Identities = 51/135 (37%), Positives = 68/135 (50%), Gaps = 7/135 (5%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + L +AK T+ YP + PR+RG+H L G+E+C+AC LC A CP+ Sbjct: 14 VIKGMKRTLSEIPRAKWTVQYPDVPITVQPRYRGQHLLHVDEAGKEKCVACYLCAAACPS 73 Query: 76 QAITIESG-------PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 I IE+ R R Y+ID +CI+CG C EACP DAI G NFE + Sbjct: 74 DCIYIEAEDDPRPYAERVGRDERYARVYNIDYGRCIFCGFCVEACPKDAITHGYNFEISV 133 Query: 129 ETRQELYYDKERLLN 143 R +L K+ LL Sbjct: 134 YNRADLLKTKDDLLI 148 >gi|283778526|ref|YP_003369281.1| NADH-quinone oxidoreductase, chain I [Pirellula staleyi DSM 6068] gi|283436979|gb|ADB15421.1| NADH-quinone oxidoreductase, chain I [Pirellula staleyi DSM 6068] Length = 185 Score = 117 bits (293), Expect = 6e-25, Method: Composition-based stats. Identities = 49/165 (29%), Positives = 79/165 (47%), Gaps = 18/165 (10%) Query: 1 MRIFRCNVSFL-----------FLKEFVGAFFLCLRYFFKA----KTTINYPFEKGST-- 43 M+ N+ ++ ++ FV ++ K+ T++YP E+ Sbjct: 1 MKTSDPNIKWIEEPQLGLAGRLYVPLFVQGLTTTFKHLKKSLVGDVVTVSYPEEEPKIGN 60 Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC-HDGTRRTVRYDIDMIK 102 +RG H L + G +C+AC LC CPA I I + D + + ID ++ Sbjct: 61 PLIYRGVHRLNKDKEGRVKCVACFLCATACPAHCIDIVAAESPWSDRDKYPQSFAIDELR 120 Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDR 147 CIYCG+C+EACPVDAI + +R+E+ +DKE+LL+ D Sbjct: 121 CIYCGMCEEACPVDAIELTSLYNLTGRSREEMVFDKEKLLSVYDE 165 >gi|219847958|ref|YP_002462391.1| NADH-quinone oxidoreductase subunit I [Chloroflexus aggregans DSM 9485] gi|219542217|gb|ACL23955.1| NADH-quinone oxidoreductase, chain I [Chloroflexus aggregans DSM 9485] Length = 165 Score = 117 bits (292), Expect = 6e-25, Method: Composition-based stats. Identities = 58/141 (41%), Positives = 76/141 (53%), Gaps = 5/141 (3%) Query: 12 FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71 +KE V LRY FK T+ YP K RFRG H L+R+ NG+ERCI C LC A Sbjct: 1 MIKELVKGLGTTLRYLFKPPVTVQYPEVKRPVRERFRGRHELKRFANGQERCIGCALCAA 60 Query: 72 ICPAQAITIESGPRCH-----DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 CPA AI + G R Y+I+M++CI+CG C++ACP +AIV +E Sbjct: 61 ACPADAILVIPAENDPANPRSPGERYAAVYEINMLRCIFCGYCEDACPTNAIVLEHQYEL 120 Query: 127 ATETRQELYYDKERLLNNGDR 147 + R+ Y KE LL D+ Sbjct: 121 SFYDRRAAIYTKEMLLVPPDK 141 >gi|254779811|ref|YP_003057917.1| NADH dehydrogenase subunit I [Helicobacter pylori B38] gi|254001723|emb|CAX29954.1| NADH-ubiquinone oxidoreductase, NQO9 subunit [Helicobacter pylori B38] Length = 220 Score = 117 bits (292), Expect = 6e-25, Method: Composition-based stats. Identities = 51/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62 F+ V + L ++ FF TI+YP E+ SPR+R H L R +G ER Sbjct: 22 FKDTVKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHNLQRLLDSGSER 81 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C LCE IC + I I + D ++ Y I++ +CIYCGLC E CP AIV G Sbjct: 82 CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140 Query: 123 NFEFATETRQE 133 FE A+ R + Sbjct: 141 RFENASTQRSQ 151 >gi|225848115|ref|YP_002728278.1| NADH-quinone oxidoreductase subunit iota [Sulfurihydrogenibium azorense Az-Fu1] gi|225643255|gb|ACN98305.1| NADH-quinone oxidoreductase subunit i [Sulfurihydrogenibium azorense Az-Fu1] Length = 200 Score = 117 bits (292), Expect = 6e-25, Method: Composition-based stats. Identities = 45/168 (26%), Positives = 80/168 (47%), Gaps = 17/168 (10%) Query: 8 VSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHA--------------- 52 + +F +F+ + L+ FK T YP+EK + RFRG HA Sbjct: 15 IEKIFFLDFIKGLKVTLKNLFKKTITTKYPYEKITPPKRFRGTHAHRVKDGNEPPSFSVL 74 Query: 53 --LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 GE RC+AC +C+ CP ++ + +G ++ VR+D++++ C+YCGLC Sbjct: 75 EKFMDINTGESRCVACYMCQQACPMPSLFRIEAVQLPNGKKKVVRFDMNLLNCLYCGLCV 134 Query: 111 EACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158 +ACPVD ++ +E A R++ + + G ++S ++ Sbjct: 135 DACPVDCLIMTDIYETAKYQREKCVIQMDDMSERGRDFDSRRLKEPDR 182 >gi|261839986|gb|ACX99751.1| NADH dehydrogenase I, I subunit [Helicobacter pylori 52] Length = 220 Score = 117 bits (292), Expect = 7e-25, Method: Composition-based stats. Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62 F+ + + L ++ FF TI+YP E+ SPR+R H L R +G ER Sbjct: 22 FKDTLKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHNLQRLLDSGSER 81 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C LCE IC + I I + D ++ Y I++ +CIYCGLC E CP AIV G Sbjct: 82 CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140 Query: 123 NFEFATETRQE 133 FE A+ R + Sbjct: 141 RFENASTQRSQ 151 >gi|313836208|gb|EFS73922.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL037PA2] gi|314927643|gb|EFS91474.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL044PA1] gi|314971358|gb|EFT15456.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL037PA3] gi|328906295|gb|EGG26070.1| NADH-quinone oxidoreductase, chain I [Propionibacterium sp. P08] Length = 198 Score = 117 bits (292), Expect = 7e-25, Method: Composition-based stats. Identities = 45/134 (33%), Positives = 67/134 (50%), Gaps = 7/134 (5%) Query: 17 VGAFFLCLRYFFKAKTTINYPFE--KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP 74 F + F+ T YP + + PR G H L R+P+G E+C+ C+LC CP Sbjct: 4 WSGFGITFETMFRKPFTQGYPEKGKEKPMPPRMHGRHQLNRWPDGLEKCVGCELCAWACP 63 Query: 75 AQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 A AI +E R G R Y+I+ ++CI CG+C EACP A+ +F+ A Sbjct: 64 ADAIYVEGADNTDEERYSPGERYGRVYEINYLRCILCGMCIEACPTRALTMTNDFKMADT 123 Query: 130 TRQELYYDKERLLN 143 +R + + K+ LL Sbjct: 124 SRAKHIWTKDELLA 137 >gi|109946837|ref|YP_664065.1| NADH dehydrogenase subunit I [Helicobacter acinonychis str. Sheeba] gi|123066349|sp|Q17Z60|NUOI_HELAH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|109714058|emb|CAJ99066.1| NADH dehydrogenase I chain I [Helicobacter acinonychis str. Sheeba] Length = 220 Score = 116 bits (291), Expect = 8e-25, Method: Composition-based stats. Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62 F+ + + L ++ FF TI+YP E+ SPR+R H L R +G ER Sbjct: 22 FKDTIKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHNLQRLLDSGSER 81 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C LCE IC + I I + D ++ Y I++ +CIYCGLC E CP AIV G Sbjct: 82 CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140 Query: 123 NFEFATETRQE 133 FE A+ R + Sbjct: 141 RFENASTQRSQ 151 >gi|317182517|dbj|BAJ60301.1| NADH dehydrogenase subunit I [Helicobacter pylori F57] Length = 220 Score = 116 bits (291), Expect = 8e-25, Method: Composition-based stats. Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62 F+ + + L ++ FF TI+YP E+ SPR+R H L R +G ER Sbjct: 22 FKDTLKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHNLQRLLDSGSER 81 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C LCE IC + I I + D ++ Y I++ +CIYCGLC E CP AIV G Sbjct: 82 CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140 Query: 123 NFEFATETRQE 133 FE A+ R + Sbjct: 141 RFENASTQRSQ 151 >gi|189220227|ref|YP_001940867.1| NADH dehydrogenase subunit I [Methylacidiphilum infernorum V4] gi|189187085|gb|ACD84270.1| NADH dehydrogenase subunit I [Methylacidiphilum infernorum V4] Length = 174 Score = 116 bits (291), Expect = 8e-25, Method: Composition-based stats. Identities = 54/172 (31%), Positives = 85/172 (49%), Gaps = 21/172 (12%) Query: 1 MRIFRCNVSFL---FLKEFVGAFFLCLRYFF-----KAKTTINYPFEKGSTSPRFRGEHA 52 M + R ++ +L + + L++F+ K + T+ YP EK P FRG Sbjct: 3 MIVKRPELNLFEKTYLPGIIQGLGITLKHFWDRITGKTRVTLEYPEEKPKLPPGFRGAPL 62 Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCH-----DGTRRTVRYDIDMIKCIYCG 107 L + G E+C++C++CE ICP +AI I G + + IDM +CIYCG Sbjct: 63 LVKDEEGREKCVSCQMCEFICPPRAIRIIPGEIPPGDKYAKVEKAPEEFFIDMTRCIYCG 122 Query: 108 LCQEACPVDAIVEGP-NFEFATETRQELYYDKERLLNNG-------DRWESE 151 LC+E CP +AI P + + +RQ+L +DK+ L G +WE + Sbjct: 123 LCEEVCPEEAIFLLPKIYSLSGYSRQDLVHDKKTLYELGGVYPLPIRKWEKK 174 >gi|163848448|ref|YP_001636492.1| NADH-quinone oxidoreductase subunit I [Chloroflexus aurantiacus J-10-fl] gi|222526376|ref|YP_002570847.1| NADH-quinone oxidoreductase subunit I [Chloroflexus sp. Y-400-fl] gi|163669737|gb|ABY36103.1| NADH-quinone oxidoreductase, chain I [Chloroflexus aurantiacus J-10-fl] gi|222450255|gb|ACM54521.1| NADH-quinone oxidoreductase, chain I [Chloroflexus sp. Y-400-fl] Length = 165 Score = 116 bits (291), Expect = 8e-25, Method: Composition-based stats. Identities = 58/141 (41%), Positives = 76/141 (53%), Gaps = 5/141 (3%) Query: 12 FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71 +KE V LRY FK T+ YP K RFRG H L+R+ NG+ERCI C LC A Sbjct: 1 MIKELVKGLGTTLRYMFKRPVTVQYPEVKRPVRERFRGRHELKRFANGQERCIGCALCAA 60 Query: 72 ICPAQAITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 CPA AI + G R Y+I+M++CI+CG C++ACP +AIV +E Sbjct: 61 ACPADAILVIPAENDPQNPRSPGERYAAVYEINMLRCIFCGYCEDACPTNAIVLEHQYEL 120 Query: 127 ATETRQELYYDKERLLNNGDR 147 + R+ Y KE LL D+ Sbjct: 121 SFYDRRAAIYTKEMLLVPPDK 141 >gi|192293097|ref|YP_001993702.1| NADH dehydrogenase subunit I [Rhodopseudomonas palustris TIE-1] gi|192286846|gb|ACF03227.1| NADH-quinone oxidoreductase, chain I [Rhodopseudomonas palustris TIE-1] Length = 173 Score = 116 bits (291), Expect = 9e-25, Method: Composition-based stats. Identities = 46/131 (35%), Positives = 68/131 (51%), Gaps = 1/131 (0%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 ++ A R F T YP +K PR RG L R P+G+ERC+AC LC +CP Sbjct: 6 WLEALLRVGRKLFVKPETQLYPEQKPKLYPRARGRIVLTRDPDGQERCVACNLCATVCPV 65 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 I + + DG + ++ +CI+CG C++ACP AI P++E + R L Sbjct: 66 GCIDL-AKAVADDGRWYPEHFRVNFARCIFCGFCEDACPTAAIQLTPDYELSEWRRDALV 124 Query: 136 YDKERLLNNGD 146 Y+K LL +G+ Sbjct: 125 YEKHDLLISGE 135 >gi|288819089|ref|YP_003433437.1| NADH dehydrogenase I chain I [Hydrogenobacter thermophilus TK-6] gi|288788489|dbj|BAI70236.1| NADH dehydrogenase I chain I [Hydrogenobacter thermophilus TK-6] gi|308752672|gb|ADO46155.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Hydrogenobacter thermophilus TK-6] Length = 201 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 47/167 (28%), Positives = 74/167 (44%), Gaps = 17/167 (10%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEH---------- 51 + F V + +F+ + LR + TINYP EK + R+RG H Sbjct: 9 KAFLNIVEAVLFVDFIKGLSVTLRNLLRRPITINYPLEKLTLPKRYRGAHGHFVWDGTEP 68 Query: 52 -------ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 Y G+ RC+AC +C+ CP + + DGT++ VR+D+++ C+ Sbjct: 69 DSLKAIGKFMSYEKGKSRCVACYMCQTACPMPTLFRIEAVQMPDGTKKVVRFDMNLYNCL 128 Query: 105 YCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 +CGLC +ACPV + E A +R Y E L + W+ Sbjct: 129 FCGLCVDACPVGCLTMTDLHELAGYSRASGVYRMEDLERHAIDWKKR 175 >gi|93005410|ref|YP_579847.1| NADH dehydrogenase subunit I [Psychrobacter cryohalolentis K5] gi|110287769|sp|Q1QD90|NUOI_PSYCK RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|92393088|gb|ABE74363.1| NADH-quinone oxidoreductase, chain I [Psychrobacter cryohalolentis K5] Length = 182 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 53/133 (39%), Positives = 74/133 (55%), Gaps = 1/133 (0%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 L V + ++ + + + TI YP PRFRG L R P+G+ERC+AC LC Sbjct: 12 LFTIVRSMWMVNSHALRPRDTILYPEVPVPVPPRFRGRIILSRDPDGDERCVACNLCAVA 71 Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 CP I+++ R DG + I+ +CI+CGLC+EACP AI P+FE RQ Sbjct: 72 CPVGCISLQKAER-EDGRWYPEFFRINFSRCIFCGLCEEACPTTAIQMTPDFEMGEYVRQ 130 Query: 133 ELYYDKERLLNNG 145 +L Y+KE LL +G Sbjct: 131 DLVYEKEHLLISG 143 >gi|255037827|ref|YP_003088448.1| NADH-quinone oxidoreductase, chain I [Dyadobacter fermentans DSM 18053] gi|254950583|gb|ACT95283.1| NADH-quinone oxidoreductase, chain I [Dyadobacter fermentans DSM 18053] Length = 197 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 47/140 (33%), Positives = 72/140 (51%), Gaps = 7/140 (5%) Query: 12 FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71 +L + +++FF K TI YP K P FRG H L+R G ERC AC LC Sbjct: 22 YLPAIATGLAITIKHFFSKKVTIQYPEVKRYLGPVFRGRHILKRDAEGRERCTACGLCAV 81 Query: 72 ICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE-GPNF 124 CPA+AI++ + R + Y+++M++CI+CGLC+EACP A+ F Sbjct: 82 ACPAEAISMVAAERVKGEENLYREEKYAAVYEVNMLRCIFCGLCEEACPKQAVYLRHDEF 141 Query: 125 EFATETRQELYYDKERLLNN 144 R ++ + K+ L+ + Sbjct: 142 VPVFTERDQVIWGKDLLVED 161 >gi|162448798|ref|YP_001611165.1| NADH dehydrogenase I chain I [Sorangium cellulosum 'So ce 56'] gi|161159380|emb|CAN90685.1| NADH dehydrogenase I chain I [Sorangium cellulosum 'So ce 56'] Length = 224 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 53/174 (30%), Positives = 77/174 (44%), Gaps = 26/174 (14%) Query: 12 FLKEFVGAFFLCLRYFFKAK--------------------TTINYPFEKGSTSPRFRGEH 51 ++ E V + +++FFK TTI+YP EK RFRG H Sbjct: 35 YIPEMVKGLGITMKHFFKNTKEMVLGQKPDPVLHALEPGVTTISYPEEKRPYPERFRGIH 94 Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGP-----RCHDGTRRTVRYDIDMIKCIYC 106 L + RC+AC C CPAQ I IE R R + ID ++C++C Sbjct: 95 RLTLREDNSPRCVACLCCSTACPAQCIAIEPAEYPDGDRRKGYERYPSSFVIDELRCVFC 154 Query: 107 GLCQEACPVDAIVE-GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 G C EACPVDAI ++R++ Y ++ L++ DR S + N + Sbjct: 155 GFCVEACPVDAIRMDTGLHAVPYDSREQFIYRRDLLMSLSDRSGSRLTANKRHE 208 >gi|317014660|gb|ADU82096.1| NADH dehydrogenase subunit I [Helicobacter pylori Gambia94/24] Length = 219 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 50/131 (38%), Positives = 68/131 (51%), Gaps = 2/131 (1%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEER 62 F+ + + L ++ FF TI+YP E+ SPR+R H L R +G ER Sbjct: 22 FKDTIKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYRAVHNLQRLLDSGSER 81 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C LCE IC + I I + D ++ Y I++ +CIYCGLC E CP AIV G Sbjct: 82 CIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVMGN 140 Query: 123 NFEFATETRQE 133 FE A+ R + Sbjct: 141 RFENASTQRSQ 151 >gi|320105159|ref|YP_004180750.1| NADH dehydrogenase subunit I [Isosphaera pallida ATCC 43644] gi|319752441|gb|ADV64201.1| NADH dehydrogenase subunit I [Isosphaera pallida ATCC 43644] Length = 201 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 44/142 (30%), Positives = 67/142 (47%), Gaps = 7/142 (4%) Query: 12 FLKEFVGAFFLCLRYFFK----AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACK 67 +L + + L + T YP E + S +RG H L + G +C+AC Sbjct: 23 YLPQVLSGLALTAHHMLGTVMGRHLTSQYPEEVHTPSQNYRGVHRLNKDEEGRVKCVACM 82 Query: 68 LCEAICPAQAITIESGPRCHDGT---RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 LC CP I I + + ID ++CIYCG+C+EACPVDAI + Sbjct: 83 LCATACPVHCIDIVPATAPPSWPDREKYPESFVIDELRCIYCGMCEEACPVDAIELTGLY 142 Query: 125 EFATETRQELYYDKERLLNNGD 146 + +R+E+ +DK +LL+ D Sbjct: 143 DLTGLSREEMIFDKTKLLSVFD 164 >gi|314965050|gb|EFT09149.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL082PA2] gi|315093910|gb|EFT65886.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL060PA1] gi|327325778|gb|EGE67570.1| NADH-quinone oxidoreductase, I subunit [Propionibacterium acnes HL103PA1] Length = 199 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 45/134 (33%), Positives = 67/134 (50%), Gaps = 7/134 (5%) Query: 17 VGAFFLCLRYFFKAKTTINYPFE--KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP 74 F + F+ T YP + + PR G H L R+P+G E+C+ C+LC CP Sbjct: 4 WSGFGITFETMFRKSFTQGYPEKGKEKPMPPRMHGRHQLNRWPDGLEKCVGCELCAWACP 63 Query: 75 AQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 A AI +E R G R Y+I+ ++CI CG+C EACP A+ +F+ A Sbjct: 64 ADAIYVEGADNTDEERYSPGERYGRVYEINYLRCILCGMCIEACPTRALTMTNDFKMADT 123 Query: 130 TRQELYYDKERLLN 143 +R + + K+ LL Sbjct: 124 SRAKHIWTKDELLA 137 >gi|269837680|ref|YP_003319908.1| NADH-quinone oxidoreductase, chain I [Sphaerobacter thermophilus DSM 20745] gi|269786943|gb|ACZ39086.1| NADH-quinone oxidoreductase, chain I [Sphaerobacter thermophilus DSM 20745] Length = 148 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 50/134 (37%), Positives = 68/134 (50%), Gaps = 2/134 (1%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPN-GEERCIACKLCEA 71 + + V F++ R F TI YP EK +PRFRG +LR P GE C+AC LC Sbjct: 1 MLDEVKGFWVTFRRLFTPNVTIQYPEEKRQMAPRFRGLPSLRADPETGEPLCVACGLCAR 60 Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 ICP + + P +G R + + +C++CG+C + CPVDAI +E AT R Sbjct: 61 ICPTSCLEMTVVP-SEEGDRELAEFILRSGRCLFCGMCAQVCPVDAITMSGEYELATLQR 119 Query: 132 QELYYDKERLLNNG 145 L Y K L G Sbjct: 120 DGLIYTKTELAAIG 133 >gi|282855266|ref|ZP_06264598.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes J139] gi|282581854|gb|EFB87239.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes J139] gi|314923986|gb|EFS87817.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL001PA1] gi|314983070|gb|EFT27162.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL110PA3] gi|315090603|gb|EFT62579.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL110PA4] gi|315104129|gb|EFT76105.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL050PA2] Length = 199 Score = 115 bits (289), Expect = 1e-24, Method: Composition-based stats. Identities = 45/134 (33%), Positives = 67/134 (50%), Gaps = 7/134 (5%) Query: 17 VGAFFLCLRYFFKAKTTINYPFE--KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP 74 F + F+ T YP + + PR G H L R+P+G E+C+ C+LC CP Sbjct: 4 WSGFGITFETMFRKSFTQGYPEKGKEKPMPPRMHGRHQLNRWPDGLEKCVGCELCAWACP 63 Query: 75 AQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 A AI +E R G R Y+I+ ++CI CG+C EACP A+ +F+ A Sbjct: 64 ADAIYVEGADNTDEERYSPGERYGRVYEINYLRCILCGMCIEACPTRALTMTNDFKMADT 123 Query: 130 TRQELYYDKERLLN 143 +R + + K+ LL Sbjct: 124 SRAKHIWTKDELLA 137 >gi|116622976|ref|YP_825132.1| NADH-quinone oxidoreductase subunit I [Candidatus Solibacter usitatus Ellin6076] gi|122253832|sp|Q01ZR8|NUOI1_SOLUE RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName: Full=NADH dehydrogenase I subunit I 1; AltName: Full=NDH-1 subunit I 1 gi|116226138|gb|ABJ84847.1| NADH-quinone oxidoreductase, chain I [Candidatus Solibacter usitatus Ellin6076] Length = 167 Score = 115 bits (289), Expect = 1e-24, Method: Composition-based stats. Identities = 50/132 (37%), Positives = 63/132 (47%), Gaps = 5/132 (3%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + T +YP RFRG H L+R NG E+C+AC LC A CP+ Sbjct: 15 IAKGMGITFKEMMGPTVTDDYPDAPPKFEERFRGVHVLQRDVNGMEKCVACFLCAAACPS 74 Query: 76 QAITIESGP-----RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 I IE+ R G R Y+ID +CI+CG C EACP DAI G FE A+ Sbjct: 75 NCIYIEAAENTDKIRMSGGERYAKVYNIDYNRCIFCGYCVEACPTDAITHGHGFEAASYN 134 Query: 131 RQELYYDKERLL 142 L KE +L Sbjct: 135 TSTLVKRKEDML 146 >gi|332971771|gb|EGK10719.1| NADH-quinone oxidoreductase subunit I [Desmospora sp. 8437] Length = 150 Score = 115 bits (289), Expect = 1e-24, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 59/134 (44%), Gaps = 5/134 (3%) Query: 11 LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70 + + + + L+ + K T YP E RFRG L ++CI C C Sbjct: 5 IHMMGLIKGMGVTLKTMTQKKVTHKYPDEPMPMPDRFRGIQYL-----DPDKCIVCNQCA 59 Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 +CP IT+ + +DI+ CI C LC E CP +AIV NFE A+ + Sbjct: 60 RVCPTDCITLTGRKHPEKRGKVIDTFDINFEICILCDLCTEVCPTEAIVMTHNFELASYS 119 Query: 131 RQELYYDKERLLNN 144 R +L+ D L N Sbjct: 120 RDDLFKDIHWLQEN 133 >gi|86748479|ref|YP_484975.1| NADH dehydrogenase subunit I [Rhodopseudomonas palustris HaA2] gi|115502508|sp|Q2J0E6|NUOI1_RHOP2 RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName: Full=NADH dehydrogenase I subunit I 1; AltName: Full=NDH-1 subunit I 1 gi|86571507|gb|ABD06064.1| NADH-quinone oxidoreductase, chain I [Rhodopseudomonas palustris HaA2] Length = 171 Score = 115 bits (289), Expect = 1e-24, Method: Composition-based stats. Identities = 51/134 (38%), Positives = 67/134 (50%), Gaps = 1/134 (0%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + ++ A R F T YP EK PR RG L R P+G+ERC+AC LC A+ Sbjct: 1 MIGWLEAMLRVGRKLFVKAETQLYPEEKPKLFPRSRGRIVLTRDPDGQERCVACNLCAAV 60 Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 CP I + DG + I+ +CI+CG C+EACP AI P+FE R Sbjct: 61 CPVGCIDLSKA-VADDGRWYPEHFRINFARCIFCGFCEEACPTAAIQLTPDFELGEWRRD 119 Query: 133 ELYYDKERLLNNGD 146 L Y+K LL G+ Sbjct: 120 ALVYEKHDLLIAGE 133 >gi|51893910|ref|YP_076601.1| NADH dehydrogenase I subunit I [Symbiobacterium thermophilum IAM 14863] gi|81388111|sp|Q67KP1|NUOI2_SYMTH RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName: Full=NADH dehydrogenase I subunit I 2; AltName: Full=NDH-1 subunit I 2 gi|51857599|dbj|BAD41757.1| NADH dehydrogenase I subunit I [Symbiobacterium thermophilum IAM 14863] Length = 240 Score = 115 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 43/139 (30%), Positives = 64/139 (46%), Gaps = 2/139 (1%) Query: 14 KEFVGAFFLCLR-YFFKAKTTINYPFEKGSTSPRFRGEHALRRY-PNGEERCIACKLCEA 71 K V + R F+ T+ YP ++ P FRG L+ GE +C +C C Sbjct: 15 KSIVTGLGITFREMMFRPAITVFYPEQRDDVPPWFRGIPVLKTDLRTGEYKCTSCMQCAQ 74 Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 CP ITIE + R+ IDM +C+ C C EACP D++V G ++E Sbjct: 75 ACPVNVITIEWHQDPETKKKVCDRFAIDMSRCMLCNFCVEACPFDSLVMGYDYELCKVNP 134 Query: 132 QELYYDKERLLNNGDRWES 150 + L ++ E LL G ++ Sbjct: 135 ENLVFEFEDLLRLGLKYSK 153 >gi|94968872|ref|YP_590920.1| NADH-quinone oxidoreductase, chain I [Candidatus Koribacter versatilis Ellin345] gi|156632693|sp|Q1IQK4|NUOI2_ACIBL RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName: Full=NADH dehydrogenase I subunit I 2; AltName: Full=NDH-1 subunit I 2 gi|94550922|gb|ABF40846.1| NADH dehydrogenase subunit I [Candidatus Koribacter versatilis Ellin345] Length = 175 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 55/137 (40%), Positives = 65/137 (47%), Gaps = 10/137 (7%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTS-----PRFRGEHALRRYPNGEERCIACKLCE 70 + FK T NYP G RFRG H L+R NG E+C+AC LC Sbjct: 10 IAKGMGITFSEMFKPTTVENYPDGPGVLRGAVFQERFRGMHVLQRDENGLEKCVACFLCA 69 Query: 71 AICPAQAITIESGPRCHDGT-----RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 A CP+ I IE+ R Y+ID +CI+CG C EACP DAI G FE Sbjct: 70 AACPSNCIYIEAAENTETNRVSGAERYAKVYNIDYNRCIFCGYCVEACPTDAITHGHGFE 129 Query: 126 FATETRQELYYDKERLL 142 AT L Y KE+LL Sbjct: 130 LATFNASNLVYRKEQLL 146 >gi|50843378|ref|YP_056605.1| NADH dehydrogenase subunit I [Propionibacterium acnes KPA171202] gi|289426989|ref|ZP_06428708.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes J165] gi|295131452|ref|YP_003582115.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes SK137] gi|81692381|sp|Q6A6G6|NUOI_PROAC RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|50840980|gb|AAT83647.1| NADH dehydrogenase I chain I [Propionibacterium acnes KPA171202] gi|289159811|gb|EFD07996.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes J165] gi|291377349|gb|ADE01204.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes SK137] gi|313763292|gb|EFS34656.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL013PA1] gi|313773338|gb|EFS39304.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL074PA1] gi|313793600|gb|EFS41640.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL110PA1] gi|313802889|gb|EFS44102.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL110PA2] gi|313806335|gb|EFS44851.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL087PA2] gi|313810759|gb|EFS48473.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL083PA1] gi|313813682|gb|EFS51396.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL025PA1] gi|313814968|gb|EFS52682.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL059PA1] gi|313819446|gb|EFS57160.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL046PA2] gi|313821252|gb|EFS58966.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL036PA1] gi|313822293|gb|EFS60007.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL036PA2] gi|313826149|gb|EFS63863.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL063PA1] gi|313829362|gb|EFS67076.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL063PA2] gi|313831070|gb|EFS68784.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL007PA1] gi|313833200|gb|EFS70914.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL056PA1] gi|313838157|gb|EFS75871.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL086PA1] gi|314916746|gb|EFS80577.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL005PA4] gi|314919128|gb|EFS82959.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL050PA1] gi|314921208|gb|EFS85039.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL050PA3] gi|314925998|gb|EFS89829.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL036PA3] gi|314930364|gb|EFS94195.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL067PA1] gi|314956147|gb|EFT00543.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL027PA1] gi|314959680|gb|EFT03782.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL002PA1] gi|314962254|gb|EFT06355.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL002PA2] gi|314963232|gb|EFT07332.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL082PA1] gi|314969775|gb|EFT13873.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL037PA1] gi|314973946|gb|EFT18042.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL053PA1] gi|314976874|gb|EFT20969.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL045PA1] gi|314979339|gb|EFT23433.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL072PA2] gi|314984996|gb|EFT29088.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL005PA1] gi|314986329|gb|EFT30421.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL005PA2] gi|314988574|gb|EFT32665.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL005PA3] gi|315079691|gb|EFT51679.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL053PA2] gi|315081019|gb|EFT52995.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL078PA1] gi|315083918|gb|EFT55894.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL027PA2] gi|315085055|gb|EFT57031.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL002PA3] gi|315089484|gb|EFT61460.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL072PA1] gi|315097697|gb|EFT69673.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL038PA1] gi|315098096|gb|EFT70072.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL059PA2] gi|315102686|gb|EFT74662.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL046PA1] gi|315107934|gb|EFT79910.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL030PA1] gi|315108828|gb|EFT80804.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL030PA2] gi|327325717|gb|EGE67514.1| NADH-quinone oxidoreductase, I subunit [Propionibacterium acnes HL096PA3] gi|327330835|gb|EGE72580.1| NADH-quinone oxidoreductase, I subunit [Propionibacterium acnes HL096PA2] gi|327333130|gb|EGE74857.1| NADH-quinone oxidoreductase, I subunit [Propionibacterium acnes HL097PA1] gi|327442872|gb|EGE89526.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL043PA2] gi|327445264|gb|EGE91918.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL043PA1] gi|327447750|gb|EGE94404.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL013PA2] gi|327451639|gb|EGE98293.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL087PA3] gi|327452292|gb|EGE98946.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL083PA2] gi|327452509|gb|EGE99163.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL092PA1] gi|328752125|gb|EGF65741.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL025PA2] gi|328755069|gb|EGF68685.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL020PA1] gi|328757017|gb|EGF70633.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes HL087PA1] gi|328761553|gb|EGF75071.1| NADH-quinone oxidoreductase, I subunit [Propionibacterium acnes HL099PA1] gi|332676321|gb|AEE73137.1| NADH-quinone oxidoreductase subunit I [Propionibacterium acnes 266] Length = 198 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 45/134 (33%), Positives = 67/134 (50%), Gaps = 7/134 (5%) Query: 17 VGAFFLCLRYFFKAKTTINYPFE--KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP 74 F + F+ T YP + + PR G H L R+P+G E+C+ C+LC CP Sbjct: 4 WSGFGITFETMFRKSFTQGYPEKGKEKPMPPRMHGRHQLNRWPDGLEKCVGCELCAWACP 63 Query: 75 AQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 A AI +E R G R Y+I+ ++CI CG+C EACP A+ +F+ A Sbjct: 64 ADAIYVEGADNTDEERYSPGERYGRVYEINYLRCILCGMCIEACPTRALTMTNDFKMADT 123 Query: 130 TRQELYYDKERLLN 143 +R + + K+ LL Sbjct: 124 SRAKHIWTKDELLA 137 >gi|39937317|ref|NP_949593.1| NADH dehydrogenase subunit I [Rhodopseudomonas palustris CGA009] gi|81619360|sp|Q6N1Z5|NUOI2_RHOPA RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName: Full=NADH dehydrogenase I subunit I 2; AltName: Full=NDH-1 subunit I 2 gi|39651175|emb|CAE29698.1| NADH-ubiquinone dehydrogenase chain I [Rhodopseudomonas palustris CGA009] Length = 173 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 46/131 (35%), Positives = 68/131 (51%), Gaps = 1/131 (0%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 ++ A R F T YP +K PR RG L R P+G+ERC+AC LC +CP Sbjct: 6 WLEALLRVGRKLFVKPETQLYPEQKPKLYPRARGRIVLTRDPDGQERCVACNLCATVCPV 65 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 I + + DG + ++ +CI+CG C++ACP AI P++E + R L Sbjct: 66 GCIDL-AKAVADDGRWYPEYFRVNFARCIFCGFCEDACPTAAIQLTPDYELSEWRRDALV 124 Query: 136 YDKERLLNNGD 146 Y+K LL +G+ Sbjct: 125 YEKHDLLISGE 135 >gi|289425635|ref|ZP_06427407.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes SK187] gi|289153936|gb|EFD02629.1| NADH-quinone oxidoreductase, chain I [Propionibacterium acnes SK187] Length = 199 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 45/134 (33%), Positives = 67/134 (50%), Gaps = 7/134 (5%) Query: 17 VGAFFLCLRYFFKAKTTINYPFE--KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP 74 F + F+ T YP + + PR G H L R+P+G E+C+ C+LC CP Sbjct: 5 WSGFGITFETMFRKSFTQGYPEKGKEKPMPPRMHGRHQLNRWPDGLEKCVGCELCAWACP 64 Query: 75 AQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 A AI +E R G R Y+I+ ++CI CG+C EACP A+ +F+ A Sbjct: 65 ADAIYVEGADNTDEERYSPGERYGRVYEINYLRCILCGMCIEACPTRALTMTNDFKMADT 124 Query: 130 TRQELYYDKERLLN 143 +R + + K+ LL Sbjct: 125 SRAKHIWTKDELLA 138 >gi|77463679|ref|YP_353183.1| NADH dehydrogenase subunit I [Rhodobacter sphaeroides 2.4.1] gi|221639523|ref|YP_002525785.1| NADH dehydrogenase subunit I [Rhodobacter sphaeroides KD131] gi|110287770|sp|Q3J1Q2|NUOI2_RHOS4 RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName: Full=NADH dehydrogenase I subunit I 2; AltName: Full=NDH-1 subunit I 2 gi|77388097|gb|ABA79282.1| NADH-quinone oxidoreductase, chain I, ferredoxin [Rhodobacter sphaeroides 2.4.1] gi|221160304|gb|ACM01284.1| NADH-quinone oxidoreductase subunit I 2 [Rhodobacter sphaeroides KD131] Length = 164 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 51/134 (38%), Positives = 69/134 (51%), Gaps = 1/134 (0%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 +K + + R F T+ YP EK +PR RG L R P+G+ERC+AC LC A Sbjct: 1 MKGILDSILRVGRMIFAPTKTVQYPEEKLPLAPRTRGRIVLTRDPDGQERCVACNLCAAA 60 Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 CP I + G + I+ +CI+CG C+EACP AI P+ E A R Sbjct: 61 CPVDCIDVVKAETPD-GRWYPESFRINFARCIFCGYCEEACPTSAIQLTPDVELADYRRG 119 Query: 133 ELYYDKERLLNNGD 146 L Y+KE LL +G+ Sbjct: 120 FLQYEKEDLLISGE 133 >gi|316973508|gb|EFV57088.1| NADH-quinone oxidoreductase subunit I [Trichinella spiralis] Length = 165 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 87/143 (60%), Positives = 94/143 (65%), Gaps = 4/143 (2%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 ++FL E + A F K TINYPFEKG SPRFRGEHALRRYP+GEERC Sbjct: 27 LDRGFHWMFLSELIRALGHLFGSFLKEPATINYPFEKGPLSPRFRGEHALRRYPSGEERC 86 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 IACKLCEAICPAQAITIE+ R G+RRT RYDIDM KCIYCGLCQEACPVDAI Sbjct: 87 IACKLCEAICPAQAITIEAEERPD-GSRRTTRYDIDMCKCIYCGLCQEACPVDAIKSN-- 143 Query: 124 FEFATETRQELYYDKERLLNNGD 146 A R L Y+ R L D Sbjct: 144 -AVAVYKRMFLLYNYLRTLEKYD 165 >gi|126462511|ref|YP_001043625.1| NADH dehydrogenase subunit I [Rhodobacter sphaeroides ATCC 17029] gi|156632694|sp|A3PKI7|NUOI2_RHOS1 RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName: Full=NADH dehydrogenase I subunit I 2; AltName: Full=NDH-1 subunit I 2 gi|126104175|gb|ABN76853.1| NADH-quinone oxidoreductase, chain I [Rhodobacter sphaeroides ATCC 17029] Length = 164 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 51/134 (38%), Positives = 69/134 (51%), Gaps = 1/134 (0%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 +K + + R F T+ YP EK +PR RG L R P+G+ERC+AC LC A Sbjct: 1 MKGILDSILRVGRMIFAPTKTVQYPEEKLPLAPRTRGRIVLTRDPDGQERCVACNLCAAA 60 Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 CP I + G + I+ +CI+CG C+EACP AI P+ E A R Sbjct: 61 CPVDCIDVVKAETPD-GRWYPESFRINFARCIFCGYCEEACPTSAIQLTPDVELADYRRG 119 Query: 133 ELYYDKERLLNNGD 146 L Y+KE LL +G+ Sbjct: 120 FLQYEKEDLLISGE 133 >gi|94676609|ref|YP_588818.1| NADH dehydrogenase subunit I [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|110287758|sp|Q1LT96|NUOI_BAUCH RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|94219759|gb|ABF13918.1| NADH-quinone oxidoreductase, chain I [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 180 Score = 115 bits (287), Expect = 2e-24, Method: Composition-based stats. Identities = 48/130 (36%), Positives = 67/130 (51%), Gaps = 1/130 (0%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + ++ F + T YP + RFRG L P+G ERC+AC LC CP Sbjct: 13 ILRSIWMIGMQAFNKRETQMYPDIPIYQTSRFRGRIVLTCDPDGYERCVACNLCAVACPV 72 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 I+++ G + I+ +CI+CGLC+EACP AI P+FE A RQ+L Sbjct: 73 DCISLQKTESKE-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPDFEMAEFKRQDLV 131 Query: 136 YDKERLLNNG 145 Y+KE LL G Sbjct: 132 YEKEDLLIRG 141 >gi|126640817|ref|YP_001083801.1| NADH dehydrogenase subunit I [Acinetobacter baumannii ATCC 17978] gi|213156543|ref|YP_002318204.1| NADH dehydrogenase I chain I 2Fe-2S ferredoxin-related [Acinetobacter baumannii AB0057] gi|215484512|ref|YP_002326747.1| NADH-quinone oxidoreductase subunit 9 [Acinetobacter baumannii AB307-0294] gi|213055703|gb|ACJ40605.1| NADH dehydrogenase I chain I 2Fe-2S ferredoxin-related [Acinetobacter baumannii AB0057] gi|213988464|gb|ACJ58763.1| NADH-quinone oxidoreductase subunit 9 [Acinetobacter baumannii AB307-0294] gi|322506935|gb|ADX02389.1| nuoI [Acinetobacter baumannii 1656-2] gi|323516802|gb|ADX91183.1| NADH dehydrogenase subunit I [Acinetobacter baumannii TCDC-AB0715] Length = 164 Score = 115 bits (287), Expect = 2e-24, Method: Composition-based stats. Identities = 50/126 (39%), Positives = 71/126 (56%), Gaps = 3/126 (2%) Query: 22 LCLRYFFKAKTTINYPFEKGS--TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79 + + F+ + TI YP PR+RG L R P+GEERC+AC LC CP I+ Sbjct: 1 MVFTHGFRKRDTILYPEVPAEEIVPPRYRGRIILTRDPDGEERCVACNLCAVACPVGCIS 60 Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139 ++ + DG + I+ +CI+CG+C+EACP AI P+FE RQ+L Y+KE Sbjct: 61 LQKAEK-EDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQLTPDFELGEYVRQDLVYEKE 119 Query: 140 RLLNNG 145 LL +G Sbjct: 120 NLLISG 125 >gi|332558535|ref|ZP_08412857.1| NADH dehydrogenase subunit I [Rhodobacter sphaeroides WS8N] gi|332276247|gb|EGJ21562.1| NADH dehydrogenase subunit I [Rhodobacter sphaeroides WS8N] Length = 164 Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 51/134 (38%), Positives = 69/134 (51%), Gaps = 1/134 (0%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 +K + + R F T+ YP EK +PR RG L R P+G+ERC+AC LC A Sbjct: 1 MKGILDSILRVGRMIFAPAKTVQYPEEKLPLAPRTRGRIVLTRDPDGQERCVACNLCAAA 60 Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 CP I + G + I+ +CI+CG C+EACP AI P+ E A R Sbjct: 61 CPVDCIDVVKAETPD-GRWYPESFRINFARCIFCGYCEEACPTSAIQLTPDVELADYRRG 119 Query: 133 ELYYDKERLLNNGD 146 L Y+KE LL +G+ Sbjct: 120 FLQYEKEDLLISGE 133 >gi|254283716|ref|ZP_04958684.1| NADH dehydrogenase i, i subunit [gamma proteobacterium NOR51-B] gi|219679919|gb|EED36268.1| NADH dehydrogenase i, i subunit [gamma proteobacterium NOR51-B] Length = 175 Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 49/126 (38%), Positives = 69/126 (54%), Gaps = 1/126 (0%) Query: 20 FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79 + L++ F T+ YP EK +PR+RG L P+GEERC+AC LC CP I Sbjct: 12 MWTILQHTFTRSETVQYPEEKPYLAPRYRGRIVLTCDPDGEERCVACNLCAVACPVDCIA 71 Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139 ++ + DG + I+ +CI CG+C+EACP +AI P+FE RQ + Y+KE Sbjct: 72 LQQATK-EDGRWYPEFFRINFSRCIMCGMCEEACPTNAIQLTPDFEMCEYDRQSMVYEKE 130 Query: 140 RLLNNG 145 L G Sbjct: 131 HLQIAG 136 >gi|288817725|ref|YP_003432072.1| NADH dehydrogenase chain I [Hydrogenobacter thermophilus TK-6] gi|288787124|dbj|BAI68871.1| NADH dehydrogenase chain I [Hydrogenobacter thermophilus TK-6] gi|308751324|gb|ADO44807.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Hydrogenobacter thermophilus TK-6] Length = 207 Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 43/180 (23%), Positives = 77/180 (42%), Gaps = 23/180 (12%) Query: 2 RIFRCNVSF---LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL----- 53 ++F +S+ +F +F+ + +R+ F T +YP+EK + RFRG Sbjct: 4 KVFERQLSWLERIFFVDFIKGLSVTIRHAFSKTITTHYPYEKLTPPKRFRGFLGHKVVDG 63 Query: 54 ---------------RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 G RC+ C LC+ CP + G + +G R +++ Sbjct: 64 NEPQPAFDEWVERFKIEVRPGRSRCVVCMLCKRACPVPQLFEIEGEKLPNGKRVVSIFNM 123 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158 +++ C +CG C +ACPVD + E A+ TR++ + E L G W++ + Sbjct: 124 NLMLCTFCGFCVDACPVDCLFNSDIHETASYTRKDAILNLEALEQIGRDWQARREKEPDR 183 >gi|146277735|ref|YP_001167894.1| NADH dehydrogenase subunit I [Rhodobacter sphaeroides ATCC 17025] gi|145555976|gb|ABP70589.1| NADH-quinone oxidoreductase, chain I [Rhodobacter sphaeroides ATCC 17025] Length = 164 Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 50/134 (37%), Positives = 68/134 (50%), Gaps = 1/134 (0%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 +K + + R F T+ YP K +PR RG L R P+G+ERC+AC LC A Sbjct: 1 MKGILDSILRVGRMVFAPTKTVEYPEVKLPLAPRTRGRIVLTRDPDGQERCVACNLCAAA 60 Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 CP I + G + I+ +CI+CG C+EACP AI P+ E A R Sbjct: 61 CPVDCIDVVKAETPD-GRWYPESFRINFARCIFCGYCEEACPTSAIQLTPDVELADYRRG 119 Query: 133 ELYYDKERLLNNGD 146 L Y+KE LL +G+ Sbjct: 120 SLQYEKEDLLISGE 133 >gi|150375766|ref|YP_001312362.1| NADH-quinone oxidoreductase subunit I [Sinorhizobium medicae WSM419] gi|150030313|gb|ABR62429.1| NADH-quinone oxidoreductase, chain I [Sinorhizobium medicae WSM419] Length = 211 Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 48/139 (34%), Positives = 74/139 (53%), Gaps = 2/139 (1%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEERCI 64 + + F + L Y F T+ YP EK R+RG H L+R GE +C+ Sbjct: 33 RWIGWAFFADLANGLALTFGYMFSKPVTMQYPDKEKWLPYSRYRGHHFLKRDAEGEIKCV 92 Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 AC+LC ICP I + G RR +++ID +C++CGLC++ACP DAI G + Sbjct: 93 ACELCAQICPCDCIEVVPYED-EKGNRRPAKFEIDTARCLFCGLCEDACPADAIALGQQY 151 Query: 125 EFATETRQELYYDKERLLN 143 EF++ + ++L ++ LL Sbjct: 152 EFSSFSSRDLVIGRDDLLA 170 >gi|116329922|ref|YP_799640.1| NADH dehydrogenase (ubiquinone), I chain [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|122282305|sp|Q04W38|NUOI_LEPBJ RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|116123611|gb|ABJ74882.1| NADH dehydrogenase (ubiquinone), I chain [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 175 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 51/145 (35%), Positives = 78/145 (53%), Gaps = 11/145 (7%) Query: 11 LFLKEFVGAFFLCLRYF-----FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 + ++ L++F + TI YP +K S RFRG H ++R G ERC + Sbjct: 21 FYFYSIGKGLWITLKHFIKAAILRRTVTIEYPEKKRKYSTRFRGMHTMKRDEQGRERCTS 80 Query: 66 CKLCEAICPAQAITIESGP------RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 C C ICPA AI IE+G H + +++ID+++CI+CG+C+EACP AI Sbjct: 81 CFCCMWICPADAIYIEAGEVVPEIQHLHPEDKYAKKFEIDLLRCIFCGMCEEACPKGAIY 140 Query: 120 EGPNFEFATETRQELYYDKERLLNN 144 E AT++R++L KER++ Sbjct: 141 LDGPGEMATDSREDLILTKERMMQI 165 >gi|116329474|ref|YP_799194.1| NADH dehydrogenase (ubiquinone), I chain [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|122282746|sp|Q04XD4|NUOI_LEPBL RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|116122218|gb|ABJ80261.1| NADH dehydrogenase (ubiquinone), I chain [Leptospira borgpetersenii serovar Hardjo-bovis L550] Length = 175 Score = 114 bits (286), Expect = 4e-24, Method: Composition-based stats. Identities = 51/145 (35%), Positives = 77/145 (53%), Gaps = 11/145 (7%) Query: 11 LFLKEFVGAFFLCLRYF-----FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 + ++ L++F + TI YP +K S RFRG H ++R G ERC + Sbjct: 21 FYFYSIGKGLWITLKHFIKAAILRRTVTIEYPEKKRKYSTRFRGMHTMKRDEQGRERCTS 80 Query: 66 CKLCEAICPAQAITIESGP------RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 C C ICPA AI IE+G H + +++ID+++CI+CG+C+EACP AI Sbjct: 81 CFCCMWICPADAIYIEAGEVVPEIQHLHPEDKYAKKFEIDLLRCIFCGMCEEACPKGAIY 140 Query: 120 EGPNFEFATETRQELYYDKERLLNN 144 E AT+ R++L KER++ Sbjct: 141 LDGPGEMATDNREDLILTKERMMQI 165 >gi|163784657|ref|ZP_02179485.1| NADH dehydrogenase I chain I [Hydrogenivirga sp. 128-5-R1-1] gi|159880075|gb|EDP73751.1| NADH dehydrogenase I chain I [Hydrogenivirga sp. 128-5-R1-1] Length = 203 Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats. Identities = 47/157 (29%), Positives = 78/157 (49%), Gaps = 17/157 (10%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHA------------- 52 N +F +F+ + ++ FF+ T YP+EK + RFRG HA Sbjct: 16 SNTERIFFIDFIKGMKITIKNFFRKTITTRYPYEKLTPPKRFRGTHAHRVRDGKEPPSFN 75 Query: 53 ----LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 GE RC+AC +C+ CP ++ + +G +R R+D++++ C+YCGL Sbjct: 76 VLLQFMEIKEGESRCVACYMCQQACPVPSLFNIEAQQLPNGKKRVKRFDMNLLNCLYCGL 135 Query: 109 CQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNG 145 C +ACPVD I+ N+E A+ TR++ + + G Sbjct: 136 CVDACPVDCIIMTDNYESASYTRKDCTIHIDDMSQRG 172 >gi|218459472|ref|ZP_03499563.1| NADH:ubiquinone oxidoreductase subunit 6 (chain I) [Rhizobium etli Kim 5] Length = 205 Score = 114 bits (285), Expect = 4e-24, Method: Composition-based stats. Identities = 47/139 (33%), Positives = 73/139 (52%), Gaps = 2/139 (1%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEERCI 64 + + F + L Y F T+ YP EK R+RG H L+R GE +C+ Sbjct: 5 RWIGWAFFADLANGLALTFGYMFSKPVTMQYPDKEKWLPYSRYRGHHFLKRDEAGEIKCV 64 Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 AC+LC ICP I + G R +++ID +C++CGLC++ACP DAI G + Sbjct: 65 ACELCARICPCDCIEVVPYED-EKGNRHPAKFEIDTARCLFCGLCEDACPADAIALGQQY 123 Query: 125 EFATETRQELYYDKERLLN 143 EF++ + ++L ++ LL Sbjct: 124 EFSSFSSRDLVIGRDDLLA 142 >gi|95928438|ref|ZP_01311186.1| NADH-quinone oxidoreductase, chain I [Desulfuromonas acetoxidans DSM 684] gi|95135709|gb|EAT17360.1| NADH-quinone oxidoreductase, chain I [Desulfuromonas acetoxidans DSM 684] Length = 131 Score = 114 bits (284), Expect = 5e-24, Method: Composition-based stats. Identities = 53/133 (39%), Positives = 76/133 (57%), Gaps = 3/133 (2%) Query: 12 FLKEFVGAFFLCLRYFF-KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70 +KEF+ + ++ TT++YP K S RFRG H L N E+C+AC LC Sbjct: 1 MIKEFIQGLSITAKHLLPGNSTTVDYPKVKLEPSDRFRGLHRLVPDHN-REKCVACYLCP 59 Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 +CPA+ IT+E+ +G + Y IDM++CI+CG C EACPV+AI +E A Sbjct: 60 TVCPAKCITVEAAED-ENGVKYPTVYQIDMLRCIFCGYCVEACPVEAIEMTGEYELANYK 118 Query: 131 RQELYYDKERLLN 143 R++ + KERLL Sbjct: 119 REDFCFTKERLLK 131 >gi|41582337|gb|AAS07951.1| NADH-quinone oxidoreductase, chain I [uncultured marine bacterium 463] Length = 175 Score = 114 bits (284), Expect = 5e-24, Method: Composition-based stats. Identities = 49/129 (37%), Positives = 71/129 (55%), Gaps = 1/129 (0%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V + L++ F T+ YP +K +PR+RG L + P+GEERC+AC LC CP Sbjct: 9 VRTIWTILQHSFTRAETVQYPEQKPYLAPRYRGRIVLTKDPDGEERCVACNLCAVACPVD 68 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 I ++ G + DG + I+ +CI CG+C+EACP +AI P+FE R + Y Sbjct: 69 CIALQQGVK-EDGRWYPEFFRINFSRCIMCGMCEEACPTNAIQLTPDFEMCEYNRSSMVY 127 Query: 137 DKERLLNNG 145 +KE L G Sbjct: 128 EKEHLQIEG 136 >gi|332883536|gb|EGK03819.1| NADH-quinone oxidoreductase subunit I [Dysgonomonas mossii DSM 22836] Length = 177 Score = 114 bits (284), Expect = 5e-24, Method: Composition-based stats. Identities = 47/153 (30%), Positives = 81/153 (52%), Gaps = 8/153 (5%) Query: 7 NVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIAC 66 ++ + + +++FFK K T+ YP ++ SP +RG+H L R G ERC AC Sbjct: 22 FAEKIYFPAVIKGLIITIKHFFKKKATVQYPEQQREFSPVYRGQHVLMRDDQGRERCTAC 81 Query: 67 KLCEAICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 LC CPA+AIT+ + R + Y+I+M++CI+CG+C+EACP +AI Sbjct: 82 GLCALSCPAEAITMVAAERKKGEEHLYREEKYASEYEINMLRCIFCGICEEACPKEAIFL 141 Query: 121 GPNFEFATET--RQELYYDKERLLNNGDRWESE 151 + R++ Y K++L+ + + ++ Sbjct: 142 TKSKLLVKPKLEREDFIYGKDKLVISVEDAKAR 174 >gi|15606570|ref|NP_213950.1| NADH dehydrogenase I chain I [Aquifex aeolicus VF5] gi|81669678|sp|O67386|NUOI2_AQUAE RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName: Full=NADH dehydrogenase I subunit I 2; AltName: Full=NDH-1 subunit I 2 gi|2983791|gb|AAC07349.1| NADH dehydrogenase I chain I [Aquifex aeolicus VF5] Length = 208 Score = 114 bits (284), Expect = 6e-24, Method: Composition-based stats. Identities = 43/173 (24%), Positives = 72/173 (41%), Gaps = 20/173 (11%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYP-------- 57 + +F +F+ + L+ + T +YP+EK + RFRG A + Sbjct: 11 SWLERIFFIDFIKGLRITLKNALRKTITTHYPYEKITPPKRFRGYFAHKVVDGTEPQPAF 70 Query: 58 ------------NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 G+ RC+ C C+ CP + G + +G R ++++M+ C Y Sbjct: 71 QEWVNRYNILVEYGKSRCVVCLRCKRACPVPQLFEIEGKKLPNGKRVVSVFNMNMLLCTY 130 Query: 106 CGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158 CG C +ACPVD + + E A+ TR++ E L G W+ R Sbjct: 131 CGFCVDACPVDCLYQTDIHENASYTRKDAVLTLEILEQIGRDWQRRREREPDR 183 >gi|307304402|ref|ZP_07584153.1| NADH-quinone oxidoreductase, chain I [Sinorhizobium meliloti BL225C] gi|307318109|ref|ZP_07597545.1| NADH-quinone oxidoreductase, chain I [Sinorhizobium meliloti AK83] gi|306896150|gb|EFN26900.1| NADH-quinone oxidoreductase, chain I [Sinorhizobium meliloti AK83] gi|306902604|gb|EFN33198.1| NADH-quinone oxidoreductase, chain I [Sinorhizobium meliloti BL225C] Length = 188 Score = 114 bits (284), Expect = 6e-24, Method: Composition-based stats. Identities = 48/139 (34%), Positives = 75/139 (53%), Gaps = 2/139 (1%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEERCI 64 + + F + L Y F T+ YP EK R+RG H L+R +GE +C+ Sbjct: 10 RWIGWAFFADLANGLALTFGYMFSRPVTMQYPDKEKWLPYSRYRGHHFLKRDDDGEIKCV 69 Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 AC+LC ICP I + G RR +++ID +C++CGLC++ACP DAI G + Sbjct: 70 ACELCARICPCDCIEVVPYED-EKGNRRPAKFEIDTARCLFCGLCEDACPADAIALGQQY 128 Query: 125 EFATETRQELYYDKERLLN 143 EF++ + ++L ++ LL Sbjct: 129 EFSSFSSRDLVIGRDDLLA 147 >gi|327398405|ref|YP_004339274.1| NAD(P)H-quinone oxidoreductase subunit I [Hippea maritima DSM 10411] gi|327181034|gb|AEA33215.1| NAD(P)H-quinone oxidoreductase subunit I [Hippea maritima DSM 10411] Length = 139 Score = 114 bits (284), Expect = 6e-24, Method: Composition-based stats. Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 2/133 (1%) Query: 11 LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPN-GEERCIACKLC 69 + + + ++Y F T YP E+ R R HAL ++ + G+ +CI C LC Sbjct: 1 MLFNDLRKGLSVTIKYLFTRPVTCQYPNERLEVPERGRWLHALEKFEDSGKIKCIDCGLC 60 Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 E +CP++ I I T+ Y++D+ +C++CGLC E CP A+ +E A Sbjct: 61 ERVCPSKCIKITPIENEDH-TKNAAEYELDLGRCLFCGLCVEVCPELALSMTDKYELAEY 119 Query: 130 TRQELYYDKERLL 142 R++ Y KE+LL Sbjct: 120 DREKFIYTKEQLL 132 >gi|254481086|ref|ZP_05094332.1| NADH-quinone oxidoreductase, chain I subfamily, putative [marine gamma proteobacterium HTCC2148] gi|214038881|gb|EEB79542.1| NADH-quinone oxidoreductase, chain I subfamily, putative [marine gamma proteobacterium HTCC2148] Length = 175 Score = 114 bits (284), Expect = 6e-24, Method: Composition-based stats. Identities = 49/129 (37%), Positives = 71/129 (55%), Gaps = 1/129 (0%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V + L++ F T+ YP +K +PR+RG L + P+GEERC+AC LC CP Sbjct: 9 VRTIWTILQHSFTRAETVQYPEQKPYLAPRYRGRIVLTKDPDGEERCVACNLCAVACPVD 68 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 I ++ G + DG + I+ +CI CG+C+EACP +AI P+FE R + Y Sbjct: 69 CIALQQGVK-EDGRWYPEFFRINFSRCIMCGMCEEACPTNAIQLTPDFEMCEYNRSSMVY 127 Query: 137 DKERLLNNG 145 +KE L G Sbjct: 128 EKEHLQIEG 136 >gi|24212861|ref|NP_710342.1| NADH dehydrogenase (ubiquinone) chain I [Leptospira interrogans serovar Lai str. 56601] gi|45656052|ref|YP_000138.1| NADH dehydrogenase II subunit [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|81472291|sp|Q8F9N0|NUOI_LEPIN RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|81699547|sp|Q72VZ9|NUOI_LEPIC RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|24193522|gb|AAN47360.1| NADH dehydrogenase (ubiquinone) chain I [Leptospira interrogans serovar Lai str. 56601] gi|45599285|gb|AAS68775.1| NADH dehydrogenase I I subunit [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 175 Score = 113 bits (283), Expect = 7e-24, Method: Composition-based stats. Identities = 49/144 (34%), Positives = 76/144 (52%), Gaps = 11/144 (7%) Query: 11 LFLKEFVGAFFLCLRYF-----FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 + ++ L++F + TI +P +K S RFRG H ++R G ERC + Sbjct: 21 FYFYSIGKGLWITLKHFIKAAILRKAVTIEFPEKKRKYSTRFRGMHTMKRDEQGRERCTS 80 Query: 66 CKLCEAICPAQAITIESGP------RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 C C ICPA AI IE+ H + +++ID+++CI+CG+C+EACP AI Sbjct: 81 CFCCMWICPADAIYIEAAEVTPEIQHLHPEDKYAKKFEIDLLRCIFCGMCEEACPKGAIY 140 Query: 120 EGPNFEFATETRQELYYDKERLLN 143 E AT+ R++L KER++ Sbjct: 141 LDGPGEMATDNREDLILTKERMMQ 164 >gi|317051063|ref|YP_004112179.1| NADH-quinone oxidoreductase subunit I [Desulfurispirillum indicum S5] gi|316946147|gb|ADU65623.1| NADH-quinone oxidoreductase, chain I [Desulfurispirillum indicum S5] Length = 173 Score = 113 bits (283), Expect = 8e-24, Method: Composition-based stats. Identities = 52/141 (36%), Positives = 76/141 (53%), Gaps = 8/141 (5%) Query: 11 LFLKEFVGAFFLCLRYFFKA------KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64 L+L E + + LR+F + +YP +K PR+RG H L +G +C+ Sbjct: 19 LYLPEIIKGMGITLRHFLRNLHDSKNIIVRDYPEQKVEIPPRWRGRHRLTTREDGSIKCV 78 Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRT-VRYDIDMIKCIYCGLCQEACPVDAIVE-GP 122 AC +C CPA+ I IE+ R T + R+DID+++CIYCG C EACPVDAI Sbjct: 79 ACFMCATNCPAKCIFIEATEREDGVTEKMPARFDIDLLECIYCGFCVEACPVDAIRMDTG 138 Query: 123 NFEFATETRQELYYDKERLLN 143 F T+ R ++ KE+L+ Sbjct: 139 IFSVVTDNRADMVVTKEQLMQ 159 >gi|322378675|ref|ZP_08053108.1| NADH-quinone oxidoreductase subunit I (NuoI) [Helicobacter suis HS1] gi|322379666|ref|ZP_08053984.1| NADH dehydrogenase subunit I [Helicobacter suis HS5] gi|321147902|gb|EFX42484.1| NADH dehydrogenase subunit I [Helicobacter suis HS5] gi|321148892|gb|EFX43359.1| NADH-quinone oxidoreductase subunit I (NuoI) [Helicobacter suis HS1] Length = 218 Score = 113 bits (283), Expect = 8e-24, Method: Composition-based stats. Identities = 48/129 (37%), Positives = 65/129 (50%), Gaps = 2/129 (1%) Query: 7 NVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEERCIA 65 + F + L ++ FF TI+YP E SPR+R H L R +G ERCI Sbjct: 27 TLKSSFGLDLFKGLGLTIKEFFSKDVTIHYPMEVLPLSPRYRAVHHLQRLLDSGNERCIG 86 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 C LCE IC + I I + + + Y I++ +CIYCGLC E CP AIV G FE Sbjct: 87 CGLCEKICTSNCIRIITHKAPDE-RKYIDSYTINLGRCIYCGLCAEVCPELAIVMGQRFE 145 Query: 126 FATETRQEL 134 ++ R + Sbjct: 146 NSSVQRSQF 154 >gi|10945077|emb|CAC14151.1| putative NADH-ubiquinone oxidoreductase subunit [Sinorhizobium meliloti] Length = 210 Score = 113 bits (282), Expect = 9e-24, Method: Composition-based stats. Identities = 48/139 (34%), Positives = 74/139 (53%), Gaps = 2/139 (1%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEERCI 64 + + F + L Y F T+ YP EK R+RG H L+R GE +C+ Sbjct: 32 RWIGWAFFADLANGLALTFGYMFSRPVTMQYPDKEKWLPYSRYRGHHFLKRDDEGEIKCV 91 Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 AC+LC ICP I + G RR +++ID +C++CGLC++ACP DAI G + Sbjct: 92 ACELCARICPCDCIEVVPYED-EKGNRRPAKFEIDTARCLFCGLCEDACPADAIALGQQY 150 Query: 125 EFATETRQELYYDKERLLN 143 EF++ + ++L ++ LL Sbjct: 151 EFSSFSSRDLVIGRDDLLA 169 >gi|149061898|gb|EDM12321.1| NADH dehydrogenase (ubiquinone) Fe-S protein 8 (predicted), isoform CRA_b [Rattus norvegicus] Length = 109 Score = 113 bits (282), Expect = 9e-24, Method: Composition-based stats. Identities = 57/75 (76%), Positives = 64/75 (85%) Query: 89 GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRW 148 G+RRT RYDIDM KCIYCG CQEACPVDAIVEGPNFEF+TET +EL Y+KE+LLNNGD+W Sbjct: 35 GSRRTTRYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFSTETHEELLYNKEKLLNNGDKW 94 Query: 149 ESEIVRNIVTDSPYR 163 E+EI NI D YR Sbjct: 95 EAEIAANIQADYLYR 109 >gi|16263279|ref|NP_436072.1| NADH:ubiquinone oxidoreductase subunit 6 (chain I) [Sinorhizobium meliloti 1021] gi|81774724|sp|Q92YN8|NUOI2_RHIME RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName: Full=NADH dehydrogenase I subunit I 2; AltName: Full=NDH-1 subunit I 2 gi|14523955|gb|AAK65484.1| NADH:ubiquinone oxidoreductase subunit 6 (chain I) [Sinorhizobium meliloti 1021] Length = 188 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 48/139 (34%), Positives = 74/139 (53%), Gaps = 2/139 (1%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEERCI 64 + + F + L Y F T+ YP EK R+RG H L+R GE +C+ Sbjct: 10 RWIGWAFFADLANGLALTFGYMFSRPVTMQYPDKEKWLPYSRYRGHHFLKRDDEGEIKCV 69 Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 AC+LC ICP I + G RR +++ID +C++CGLC++ACP DAI G + Sbjct: 70 ACELCARICPCDCIEVVPYED-EKGNRRPAKFEIDTARCLFCGLCEDACPADAIALGQQY 128 Query: 125 EFATETRQELYYDKERLLN 143 EF++ + ++L ++ LL Sbjct: 129 EFSSFSSRDLVIGRDDLLA 147 >gi|188996811|ref|YP_001931062.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188931878|gb|ACD66508.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 200 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 39/165 (23%), Positives = 75/165 (45%), Gaps = 17/165 (10%) Query: 11 LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHA-----------------L 53 +F +F+ + + + T YPFEK + RFRG HA Sbjct: 18 IFFIDFMKGLKVTFKNLLQKTITTKYPFEKLTPPKRFRGVHAHRVKDGNEPPSFSVLEKF 77 Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 GE RC+AC +C+ CP ++ + + +G ++ +++++++ C+YCGLC +AC Sbjct: 78 MDIETGESRCVACYMCQQACPMPSLFVIEAEQLPNGKKKVKKFEMNLLNCLYCGLCVDAC 137 Query: 114 PVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158 PV+ ++ +E A R+ E + G ++ ++ Sbjct: 138 PVNCLIMTDIYEMAQYQRKNCVIHMEDMSERGKDFDRRRLKEPDR 182 >gi|183222747|ref|YP_001840743.1| NADH-quinone oxidoreductase chain I [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189912779|ref|YP_001964334.1| NADH dehydrogenase subunit I [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|226737397|sp|B0SHV5|NUOI_LEPBA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|226737398|sp|B0SRH5|NUOI_LEPBP RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|167777455|gb|ABZ95756.1| NADH dehydrogenase (ubiquinone), I chain [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167781169|gb|ABZ99467.1| NADH-quinone oxidoreductase chain I [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 175 Score = 113 bits (282), Expect = 1e-23, Method: Composition-based stats. Identities = 51/144 (35%), Positives = 78/144 (54%), Gaps = 11/144 (7%) Query: 11 LFLKEFVGAFFLCLRYF-----FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 + ++ L++F F + TI YP +K S RFRG H+++R G ERC A Sbjct: 21 FYFWSIGKGLWITLKHFVKVAFFNKQVTIEYPDKKRQYSTRFRGMHSMKRDEQGRERCTA 80 Query: 66 CKLCEAICPAQAITIESGP------RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 C C ICPA AI IE+ H + +++I++++CI+CGLC+EACP AI Sbjct: 81 CFCCMWICPANAIHIEAAEVTAERQHLHPEDKYAKKFEINLLRCIFCGLCEEACPKGAIY 140 Query: 120 EGPNFEFATETRQELYYDKERLLN 143 E A + R++L+ KER++ Sbjct: 141 LDGTGEMAADNREDLFLTKERMME 164 >gi|297181764|gb|ADI17945.1| formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kd subunit (chain i) [uncultured Desulfobacterales bacterium HF0200_07G10] Length = 189 Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 51/171 (29%), Positives = 77/171 (45%), Gaps = 23/171 (13%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFF----------------KAKTTINYPFEKGSTS 44 M + + ++ E + +L R FF + T+ YP EK Sbjct: 11 MTWWERS----YIPEILKGMWLTSRRFFHNLFGFIPFFLGTEKDRRIMTVYYPEEKIEYP 66 Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP---RCHDGTRRTVRYDIDMI 101 +RG L + +G+ C+AC LCE CPA I IE G + + R +DID Sbjct: 67 VAYRGRPVLAQNEDGQPACVACGLCEIACPAYCIHIEPGENSGKQNQYERWPDVFDIDYA 126 Query: 102 KCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEI 152 CI+CG C+EACP +AI + E + R+++ Y KE+LL + I Sbjct: 127 ICIFCGNCEEACPEEAIFMSDDCEISMLDRKKMLYTKEQLLTPVADLQKRI 177 >gi|224437351|ref|ZP_03658323.1| NADH dehydrogenase subunit I [Helicobacter cinaedi CCUG 18818] gi|313143814|ref|ZP_07806007.1| NADH-quinone oxidoreductase subunit I [Helicobacter cinaedi CCUG 18818] gi|313128845|gb|EFR46462.1| NADH-quinone oxidoreductase subunit I [Helicobacter cinaedi CCUG 18818] Length = 234 Score = 112 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 51/136 (37%), Positives = 66/136 (48%), Gaps = 2/136 (1%) Query: 7 NVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEERCIA 65 F + + L FF T+ YP E SPR+R H L R + ERCI Sbjct: 26 TFKTSFSLDLLSGLKTALGAFFSPNVTVQYPLESNPLSPRYRAIHKLQRLLESENERCIG 85 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 C LCE IC + I I + R DG ++ + Y I+ +CIYCGLC E CP AI+ G FE Sbjct: 86 CGLCEKICTSNCIRIITD-RGEDGRKKILDYSINFGRCIYCGLCAEVCPELAIIHGKGFE 144 Query: 126 FATETRQELYYDKERL 141 A+ R + E L Sbjct: 145 NASVQRAHFGFKPELL 160 >gi|225849707|ref|YP_002729941.1| NADH-quinone oxidoreductase subunit i 2 (nadhdehydrogenase i subunit i 2) (ndh-1 subunit i 2) [Persephonella marina EX-H1] gi|225645452|gb|ACO03638.1| NADH-quinone oxidoreductase subunit i 2 (nadhdehydrogenase i subunit i 2) (ndh-1 subunit i 2) [Persephonella marina EX-H1] Length = 233 Score = 112 bits (280), Expect = 1e-23, Method: Composition-based stats. Identities = 49/185 (26%), Positives = 79/185 (42%), Gaps = 27/185 (14%) Query: 5 RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRR--------- 55 + V +F +F +++ F+ T+++P+E +PRFRG H LR Sbjct: 15 QSIVEKIFFLDFAKGLATTIKHLFRKVITVDFPYEVVVPAPRFRGVHGLRNVDGTELPDF 74 Query: 56 -----------YPNGEERCIACKLCEAICPAQAITIES-------GPRCHDGTRRTVRYD 97 GE RCI CK C+A CP I H G + ++D Sbjct: 75 DAWVKKLKIKPPEMGETRCIGCKFCQAACPVPEIFTIKTEKLDVPEDHPHHGLKVVSQFD 134 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIV 157 +D+ KC++CGLC ACP I+ ++ ++ TR+ DKE+L D + S Sbjct: 135 MDLGKCMFCGLCTLACPTACIIHTDIYDLSSYTRRGWVLDKEKLSKIADDFVSRRREEKF 194 Query: 158 TDSPY 162 + + Sbjct: 195 DEHSF 199 >gi|33519937|ref|NP_878769.1| NADH dehydrogenase subunit I [Candidatus Blochmannia floridanus] gi|81666916|sp|Q7VRV9|NUOI_BLOFL RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|33504283|emb|CAD83175.1| NADH dehydrogenase I chain I [Candidatus Blochmannia floridanus] Length = 181 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 44/145 (30%), Positives = 69/145 (47%), Gaps = 4/145 (2%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M++ ++ + + ++ F + T YP S R+RG L R G Sbjct: 2 MKLKEFFINII---SIFRSVYMVGMQAFSKRETYMYPDVACKLSSRYRGRIVLTRDSAGH 58 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERC+AC LC CP I+++ G + I+ +CI+CG+C+EACP AI Sbjct: 59 ERCVACNLCAVSCPVGCISLKKSENSE-GRWYPEFFRINFSRCIFCGMCEEACPTAAIQL 117 Query: 121 GPNFEFATETRQELYYDKERLLNNG 145 +FE + R +L Y+K LL +G Sbjct: 118 ISDFEMSDYKRSDLVYEKSDLLISG 142 >gi|188996567|ref|YP_001930818.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188931634|gb|ACD66264.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 230 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 46/180 (25%), Positives = 80/180 (44%), Gaps = 27/180 (15%) Query: 8 VSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALR------------- 54 V +F +F+ +++ +K T+++P+E + PRFRG H LR Sbjct: 14 VEKIFFLDFIKGLKTTIKHLWKKVITVDFPYEVVTPPPRFRGIHGLRTVDGTENPEFDSW 73 Query: 55 -------RYPNGEERCIACKLCEAICPAQAITIE-------SGPRCHDGTRRTVRYDIDM 100 GE RCIACK C+A CP + H G + +++D+ Sbjct: 74 VKRLKIKPPEPGETRCIACKFCQAACPVPELFDIQSEKLDVPEDHPHYGLKVMTVFNMDL 133 Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDS 160 KC +CGLC +ACP D I+ ++ ++ TR+ DK++L + + + + + Sbjct: 134 SKCTFCGLCTQACPTDCIIMTDIYDLSSYTRKSWVLDKDKLTQIANDFVARRGKEKFNEK 193 >gi|301061344|ref|ZP_07202126.1| NADH-quinone oxidoreductase, chain I [delta proteobacterium NaphS2] gi|300444663|gb|EFK08646.1| NADH-quinone oxidoreductase, chain I [delta proteobacterium NaphS2] Length = 299 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 46/123 (37%), Positives = 57/123 (46%), Gaps = 1/123 (0%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 L + FK T YP K R R L R P GEERC+AC LC A Sbjct: 16 FSGLARGLGTTLIHLFKKNVTEEYPEYKRPLFERTRARIILTRDPEGEERCVACYLCAAA 75 Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 CP I++ R DG R + I+ +CIYCGLC+EACP AI ++EF + Sbjct: 76 CPVSCISMGGAER-EDGRRWATWFRINFARCIYCGLCEEACPTLAIQLTAHYEFCDDDIL 134 Query: 133 ELY 135 L Sbjct: 135 NLV 137 >gi|116515045|ref|YP_802674.1| NADH dehydrogenase I chain I [Buchnera aphidicola str. Cc (Cinara cedri)] gi|122285559|sp|Q057W8|NUOI_BUCCC RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|116256899|gb|ABJ90581.1| NADH dehydrogenase I chain I [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 181 Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 51/140 (36%), Positives = 74/140 (52%), Gaps = 2/140 (1%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 N+ FL + + F + T YP E + S R+RG L R NG ERC+A Sbjct: 4 KNIFLGFLSQIRSILMI-FSNIFSFRETRLYPDEPLNLSLRYRGRIILTRNSNGSERCVA 62 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 C LC A+CP I+++ +G + I++ +CI+CGLC+EACP AI P+ E Sbjct: 63 CNLCSAVCPVNCISLKKSEE-KNGRWYAKSFQINLSRCIFCGLCEEACPTMAIQLTPDIE 121 Query: 126 FATETRQELYYDKERLLNNG 145 + R+EL Y K+ LL +G Sbjct: 122 LSEFKRKELLYKKKNLLFSG 141 >gi|225629812|ref|ZP_03787741.1| NADH dehydrogenase I, I subunit [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591335|gb|EEH12446.1| NADH dehydrogenase I, I subunit [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 105 Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 76/105 (72%), Positives = 85/105 (80%), Gaps = 1/105 (0%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 NGE+ CIACKLCE ICPAQAI IE+ R DG+RRT RYDIDM KCIYCGLCQEACPVDA Sbjct: 1 NGEDECIACKLCEVICPAQAIVIEAEER-EDGSRRTTRYDIDMTKCIYCGLCQEACPVDA 59 Query: 118 IVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPY 162 IVEGPNFEFATETR+EL Y+KE+LL NG+ WE I + + PY Sbjct: 60 IVEGPNFEFATETREELMYNKEKLLRNGEVWEDAIALRLKKNRPY 104 >gi|315453245|ref|YP_004073515.1| NADH-quinone oxidoreductase subunit I [Helicobacter felis ATCC 49179] gi|315132297|emb|CBY82925.1| NADH-quinone oxidoreductase subunit I [Helicobacter felis ATCC 49179] Length = 207 Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 50/129 (38%), Positives = 66/129 (51%), Gaps = 2/129 (1%) Query: 7 NVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEERCIA 65 + F E L ++ FF + TI+YP E SPR+R H L R +G ERCI Sbjct: 20 TLKTSFGLELFKGLGLTIKEFFSKEVTIHYPMEVLPLSPRYRAVHHLQRLLESGNERCIG 79 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 C LCE IC + I I + D + Y I++ +CIYCGLC E CP AIV G FE Sbjct: 80 CGLCEKICTSNCIRIITHK-GEDERKHIDSYTINLGRCIYCGLCAEVCPELAIVMGQRFE 138 Query: 126 FATETRQEL 134 ++ R + Sbjct: 139 NSSVQRSQF 147 >gi|195953134|ref|YP_002121424.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Hydrogenobaculum sp. Y04AAS1] gi|195932746|gb|ACG57446.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Hydrogenobaculum sp. Y04AAS1] Length = 208 Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 38/165 (23%), Positives = 73/165 (44%), Gaps = 20/165 (12%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL------------ 53 + + +F+ + ++ F T +YP+EK + RFRG Sbjct: 11 NFLETILFLDFIKGMSVTIKQAFTKTITTHYPYEKLTPPKRFRGFFGHKTVNGLEPQPAF 70 Query: 54 --------RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 G+ RC+ C LC+ CP + G + +G + ++++++ C + Sbjct: 71 DEWVERMKIEPRPGKSRCVVCYLCKKACPVPDLFEIDGQKLENGKKVVSVFNMNLMLCTF 130 Query: 106 CGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWES 150 CGLC +ACPVD + + E A+ +R++ + E+L G W++ Sbjct: 131 CGLCVDACPVDCLFQSDIHETASFSRKDSILNLEKLEAIGRSWQN 175 >gi|27904653|ref|NP_777779.1| NADH dehydrogenase subunit I [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|38372472|sp|Q89AT9|NUOI_BUCBP RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|27904050|gb|AAO26884.1| NADH dehydrogenase I chain I [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 180 Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 48/145 (33%), Positives = 75/145 (51%), Gaps = 4/145 (2%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M +F+ ++ + + +L F + T YP E S S R+RG L R G+ Sbjct: 1 MILFKFFLACF---SQIKSVWLTFINIFSKRETRMYPEESLSLSSRYRGRIILSRNSFGK 57 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERC+AC LC +CP I++ + + I++ +CI+CGLC+EACP AI Sbjct: 58 ERCVACGLCSVVCPVSCISL-KKSTLKNNKWYPKFFRINLSRCIFCGLCEEACPTLAIQL 116 Query: 121 GPNFEFATETRQELYYDKERLLNNG 145 + E + RQ+L Y+K+ LL +G Sbjct: 117 ISDVELSEYKRQDLVYEKDDLLISG 141 >gi|328952913|ref|YP_004370247.1| NAD(P)H-quinone oxidoreductase subunit I [Desulfobacca acetoxidans DSM 11109] gi|328453237|gb|AEB09066.1| NAD(P)H-quinone oxidoreductase subunit I [Desulfobacca acetoxidans DSM 11109] Length = 177 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 42/138 (30%), Positives = 63/138 (45%), Gaps = 3/138 (2%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPN-G 59 M + V+ + + +RYF K T+ YP EK + SPR+RG G Sbjct: 2 MAYVKETVNGF--ISLLAGLAVTIRYFVKPIVTVQYPREKLTLSPRYRGHIEFIIDEETG 59 Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 RC AC+ C CP++ IT+ +R V Y +D C CGLC E CP +A+ Sbjct: 60 SHRCTACENCMRTCPSKVITVTGVKVAGSKKKRAVTYQLDYSLCSLCGLCVEVCPTNALK 119 Query: 120 EGPNFEFATETRQELYYD 137 + A +R+++ D Sbjct: 120 FSDEYRLAGYSRKDMVID 137 >gi|115378570|ref|ZP_01465725.1| NADH-quinone oxidoreductase chain i [Stigmatella aurantiaca DW4/3-1] gi|310820736|ref|YP_003953094.1| NADH-quinone oxidoreductase subunit i [Stigmatella aurantiaca DW4/3-1] gi|115364442|gb|EAU63522.1| NADH-quinone oxidoreductase chain i [Stigmatella aurantiaca DW4/3-1] gi|309393808|gb|ADO71267.1| NADH-quinone oxidoreductase subunit I [Stigmatella aurantiaca DW4/3-1] Length = 244 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 49/160 (30%), Positives = 72/160 (45%), Gaps = 28/160 (17%) Query: 12 FLKEFVGAFFLCLRYFFKA-------------------KTTINYPFEKGSTSPRFRGEHA 52 ++ E + + ++FF+ TT++YP EK P +RG H Sbjct: 18 YVPELLRGLAITTKHFFRNLFGTRDTNTEVVDRKGTSLVTTVSYPEEKPVYPPGYRGLHR 77 Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG--------TRRTVRYDIDMIKCI 104 L +G+ RC+AC +C ICPAQ I IE+G + + ++ ID ++CI Sbjct: 78 LVPREDGKPRCVACYMCATICPAQCIYIEAGEYAPESEESQSRVIEKYPTQFVIDELRCI 137 Query: 105 YCGLCQEACPVDAIVE-GPNFEFATETRQELYYDKERLLN 143 CGLC EACP DAI RQ +D +LL Sbjct: 138 VCGLCVEACPKDAIRMDTYEHTKPEYNRQGFVFDIPKLLK 177 >gi|171914649|ref|ZP_02930119.1| NADH dehydrogenase (ubiquinone), I chain [Verrucomicrobium spinosum DSM 4136] Length = 177 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 50/147 (34%), Positives = 72/147 (48%), Gaps = 12/147 (8%) Query: 11 LFLKEFVGAFFLCLRYFF-----KAKTTINYPFEKGS--TSPRFRGEHALRRYPNGEERC 63 F+ + L + K K T+ YP EK +RG AL +G ERC Sbjct: 17 WFISTLAKGLLITLGHAIAILRGKKKVTMQYPEEKWDANLPDHYRGAPALVTDEHGRERC 76 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTR-----RTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++C+LCE ICP +AITI R ++IDMI+CIYCG+C+E CP AI Sbjct: 77 VSCQLCEFICPPRAITIIPEEIPSTDPWAKVEKRPRLFNIDMIRCIYCGMCEEVCPEQAI 136 Query: 119 VEGPNFEFATETRQELYYDKERLLNNG 145 ++ +R E+ +DK++L G Sbjct: 137 FLRKDYAITGLSRAEMVHDKKKLYEIG 163 >gi|227822745|ref|YP_002826717.1| NADH-quinone oxidoreductase subunit I2 [Sinorhizobium fredii NGR234] gi|227341746|gb|ACP25964.1| NADH-quinone oxidoreductase subunit I2 [Sinorhizobium fredii NGR234] Length = 188 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 48/142 (33%), Positives = 74/142 (52%), Gaps = 2/142 (1%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEE 61 + + F + L Y F T+ YP EK R+RG H L+R GE Sbjct: 7 TIGTWIGWTFFADLATGLALTFGYMFSKTVTMQYPDKEKWLPYSRYRGHHFLKRDEEGEI 66 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 +C+AC+LC ICP I + G RR +++ID +C++CGLC++ACP DAI G Sbjct: 67 KCVACELCARICPCYCIEVVPYED-EKGNRRPAKFEIDTARCLFCGLCEDACPADAIALG 125 Query: 122 PNFEFATETRQELYYDKERLLN 143 +EF++ + ++L ++ LL Sbjct: 126 QQYEFSSFSSRDLVIGRDDLLA 147 >gi|154174565|ref|YP_001407454.1| NADH dehydrogenase subunit I [Campylobacter curvus 525.92] gi|112803235|gb|EAU00579.1| NADH-quinone oxidoreductase subunit i (nadhdehydrogenase i subunit i) (ndh-1 subunit i) [Campylobacter curvus 525.92] Length = 231 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 51/149 (34%), Positives = 77/149 (51%), Gaps = 3/149 (2%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYF-FKAKTTINYPFEKGSTSPRFRGEHALRRY-PNGEE 61 F+ +S F E ++ LR F T+ YP +K R+RG H L R+ + E Sbjct: 22 FKRFISRTFKSELFTGLWVVLREMLFTKSHTLKYPLQKIELDARYRGVHRLMRFIESENE 81 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCI C LCE IC + I +++ +G + T++Y I++ +C+YCG C + CP AIV G Sbjct: 82 RCIGCGLCEKICVSNCIAMQTALD-ENGRKATLKYSINLGRCVYCGFCADVCPELAIVHG 140 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWES 150 +EFA+E R + L + D E Sbjct: 141 DRYEFASEQRAYFGMKDDFLTKDKDLSEQ 169 >gi|154508645|ref|ZP_02044287.1| hypothetical protein ACTODO_01146 [Actinomyces odontolyticus ATCC 17982] gi|153798279|gb|EDN80699.1| hypothetical protein ACTODO_01146 [Actinomyces odontolyticus ATCC 17982] Length = 151 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 46/125 (36%), Positives = 66/125 (52%), Gaps = 5/125 (4%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + + + + FF+ T YP E PRF G H L RY +G E+C+ C+LC CPA Sbjct: 27 MAGYGVTMASFFRPTVTEQYPREPARVMPRFHGRHQLNRYDDGLEKCVGCELCAWACPAD 86 Query: 77 AITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 AI +E + G R Y I+ ++CI+CG+C EACP A+ +FE A TR Sbjct: 87 AIFVEAASNTPEEQYSAGERYGRVYQINYLRCIFCGMCIEACPTRALTMTNDFEIAKYTR 146 Query: 132 QELYY 136 ++ Y Sbjct: 147 EDDIY 151 >gi|95928465|ref|ZP_01311213.1| 4Fe-4S ferredoxin, iron-sulfur binding [Desulfuromonas acetoxidans DSM 684] gi|95135736|gb|EAT17387.1| 4Fe-4S ferredoxin, iron-sulfur binding [Desulfuromonas acetoxidans DSM 684] Length = 146 Score = 111 bits (277), Expect = 3e-23, Method: Composition-based stats. Identities = 36/131 (27%), Positives = 58/131 (44%), Gaps = 1/131 (0%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPN-GEERCIACKLCEAI 72 + + L+ F T +YP +K +P +RG L + G +CI C C Sbjct: 13 WSLIVGLKVTLKALFSPTVTTHYPRQKIEVTPNYRGHIDLVKDSESGSHKCITCGSCMRE 72 Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 CP+ I ++ R + ++ +D KC CG C E CP DA+ +E A R+ Sbjct: 73 CPSDCIVVDGEKREGVKGKVLTKFTLDFTKCSLCGACVEVCPTDALDYSNEYELAGFKRE 132 Query: 133 ELYYDKERLLN 143 + +YD + L Sbjct: 133 DFHYDILKRLE 143 >gi|295697740|ref|YP_003590978.1| NADH-quinone oxidoreductase, chain I [Bacillus tusciae DSM 2912] gi|295413342|gb|ADG07834.1| NADH-quinone oxidoreductase, chain I [Bacillus tusciae DSM 2912] Length = 154 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 48/136 (35%), Positives = 61/136 (44%), Gaps = 6/136 (4%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + F+ + + K K T+ YP + RFRG H L ERCI C C I Sbjct: 1 MFGFLKGLAVTISQLPKKKVTLQYPDVRPQWPERFRGIHQL-----SVERCIVCGQCARI 55 Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 CP I++ SG R D +DI CI C LC E CP +AI FE A +R Sbjct: 56 CPTSCISL-SGTRGEDRKLHLDTFDISFEICILCDLCTEVCPTEAIKMTDEFELAAYSRD 114 Query: 133 ELYYDKERLLNNGDRW 148 +LY + E L N R Sbjct: 115 QLYKNIEWLHENYVRH 130 >gi|256390059|ref|YP_003111623.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Catenulispora acidiphila DSM 44928] gi|256356285|gb|ACU69782.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Catenulispora acidiphila DSM 44928] Length = 531 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 47/135 (34%), Positives = 59/135 (43%), Gaps = 14/135 (10%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 L+ T YP K PR RG AL EE C +C LC CP Sbjct: 42 LAKGLATTLKTMTHRSVTAQYPDVKPELPPRSRGVIALL-----EENCTSCMLCARECPD 96 Query: 76 QAITIESG----PRCHDGTRRTVR-----YDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 I I+S P G R R + ID C+YCG+C EACP DA+ P FE+ Sbjct: 97 WCIYIDSHKEVVPATEPGQRDRTRNVLDRFAIDYSLCMYCGICIEACPFDALFWSPEFEY 156 Query: 127 ATETRQELYYDKERL 141 A +L ++K+RL Sbjct: 157 AEFDIVDLLHEKDRL 171 >gi|154291493|ref|XP_001546329.1| hypothetical protein BC1G_15267 [Botryotinia fuckeliana B05.10] gi|150846765|gb|EDN21958.1| hypothetical protein BC1G_15267 [Botryotinia fuckeliana B05.10] Length = 271 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 65/156 (41%), Positives = 80/156 (51%), Gaps = 32/156 (20%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 + + E ++ L +F+ TI YPFEK Sbjct: 69 STMDKAGKYFLMSELFRGMYVVLEQYFRPPYTIYYPFEKI-------------------- 108 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 CPAQAITIE+ R DG+RRT RYDIDM KCIYCG CQE+CPVDAIVE Sbjct: 109 -----------CPAQAITIEAEER-EDGSRRTTRYDIDMTKCIYCGFCQESCPVDAIVES 156 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIV 157 PN E+ATETR+EL Y+KE+L W S ++ I Sbjct: 157 PNAEYATETREELLYNKEKLFGCEVDWSSTLLDEIA 192 >gi|262197692|ref|YP_003268901.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haliangium ochraceum DSM 14365] gi|262081039|gb|ACY17008.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haliangium ochraceum DSM 14365] Length = 204 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 48/147 (32%), Positives = 69/147 (46%), Gaps = 11/147 (7%) Query: 12 FLKEFVGAFFLCLRYFFKAKT---------TINYPFEKGSTSPRFRGEHALRRYPNGEER 62 FL + + L++F K T++YP EK R RG H L + +G R Sbjct: 42 FLPATIKGLGITLKHFAKNVFRGRGKAYIETLSYPEEKEPYPERNRGLHRLMQREDGAAR 101 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGT-RRTVRYDIDMIKCIYCGLCQEACPVDAIVE- 120 C+AC C +CPA ITI G + ++ID ++C+ CGLC E+CP DAI Sbjct: 102 CVACMCCPTVCPANCITIIPAETDDQGIEKYPAVFEIDELRCVVCGLCVESCPCDAIRMD 161 Query: 121 GPNFEFATETRQELYYDKERLLNNGDR 147 E R + K++LL+ G R Sbjct: 162 TGIHAPPVEERGDGIMVKDQLLDLGIR 188 >gi|225848100|ref|YP_002728263.1| NADH-quinone oxidoreductase subunit iota [Sulfurihydrogenibium azorense Az-Fu1] gi|225644414|gb|ACN99464.1| NADH-quinone oxidoreductase subunit i 2 (nadhdehydrogenase i subunit i 2) (ndh-1 subunit i 2) [Sulfurihydrogenibium azorense Az-Fu1] Length = 230 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 27/180 (15%) Query: 8 VSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALR------------- 54 V +F +F+ +++ +K T+++P+E + PRFRG H LR Sbjct: 14 VEKIFFLDFIKGLKTTIKHLWKKVITVDFPYEVVTPPPRFRGVHGLRTVDGTENPEFDSW 73 Query: 55 -------RYPNGEERCIACKLCEAICPAQAITIE-------SGPRCHDGTRRTVRYDIDM 100 GE RCIACK C+A CP + H G + +++D+ Sbjct: 74 VKRLKIKPPEPGETRCIACKFCQAACPVPELFDIQSEKLDVPEGHPHYGLKVMTVFNMDL 133 Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDS 160 KC +CGLC +ACP D I+ ++ ++ TR+ DK+ L + + + + + Sbjct: 134 SKCTFCGLCTQACPTDCIIMTDIYDLSSYTRRSWVLDKDMLTQIANDFVARRGKEKFDEK 193 >gi|226227060|ref|YP_002761166.1| NADH-quinone oxidoreductase chain I [Gemmatimonas aurantiaca T-27] gi|226090251|dbj|BAH38696.1| NADH-quinone oxidoreductase chain I [Gemmatimonas aurantiaca T-27] Length = 151 Score = 110 bits (276), Expect = 4e-23, Method: Composition-based stats. Identities = 46/133 (34%), Positives = 69/133 (51%), Gaps = 2/133 (1%) Query: 12 FLKEFVGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70 +++ + ++ K T+ YP K SPR+RG H + +G+ +C+AC LC Sbjct: 3 YIRSTLAGMATTFKHLVDPHKVTMEYPETKWDLSPRWRGTHRMLTTEDGKAKCVACGLCP 62 Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 +CPA I + G G R + ++ID +CI+CG CQE CP +AI G ++E A Sbjct: 63 TVCPANCIKLTPGED-EQGNRYPLVFEIDEFRCIFCGYCQEVCPEEAIHLGRHYENAEYD 121 Query: 131 RQELYYDKERLLN 143 R YD ERL Sbjct: 122 RASFVYDLERLTA 134 >gi|330860328|emb|CBX70641.1| NADH-quinone oxidoreductase subunit I [Yersinia enterocolitica W22703] Length = 137 Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats. Identities = 52/136 (38%), Positives = 71/136 (52%), Gaps = 8/136 (5%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LKE V F +R + F + T YP E PR+RG L R P+GEERC Sbjct: 1 MTLKELVVGFGTQVRSLWMIGLHAFHKRETQMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AC LC CP I+++ G + I+ +CI+CGLC+EACP AI P+ Sbjct: 61 VACNLCAVACPVGCISLQKAEHKD-GRWYPEFFRINFSRCIFCGLCEEACPTTAIQLTPD 119 Query: 124 FEFATETRQELYYDKE 139 FE RQ+L Y+K+ Sbjct: 120 FEMGEFKRQDLVYEKK 135 >gi|86359334|ref|YP_471226.1| NADH-ubiquinone oxidoreductase protein [Rhizobium etli CFN 42] gi|115502513|sp|Q2K3T7|NUOI2_RHIEC RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName: Full=NADH dehydrogenase I subunit I 2; AltName: Full=NDH-1 subunit I 2 gi|86283436|gb|ABC92499.1| probable NADH-ubiquinone oxidoreductase protein [Rhizobium etli CFN 42] Length = 188 Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats. Identities = 48/138 (34%), Positives = 74/138 (53%), Gaps = 2/138 (1%) Query: 7 NVSFLFLKEFVGAFFLCLRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEERCIA 65 + + F + A L Y F + T+ YP EK R+RG H L+R GE +C+A Sbjct: 11 WIGWTFFADLANALTLTFGYMFSSPVTMQYPDTEKWLPYSRYRGHHFLKRDEEGEIKCVA 70 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 C+LC ICP I + G R +++ID +C++CGLC++ACP DAI G +E Sbjct: 71 CELCARICPCDCIEVVPYED-EKGNRHPAKFEIDTARCLFCGLCEDACPADAIALGQQYE 129 Query: 126 FATETRQELYYDKERLLN 143 F++ + +L ++ LL Sbjct: 130 FSSFSSADLVIGRDDLLA 147 >gi|289548985|ref|YP_003473973.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermocrinis albus DSM 14484] gi|289182602|gb|ADC89846.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermocrinis albus DSM 14484] Length = 208 Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats. Identities = 42/165 (25%), Positives = 72/165 (43%), Gaps = 20/165 (12%) Query: 7 NVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL------------- 53 + + +F+ + +R+ F+ T +YP+EK + RFRG Sbjct: 12 WLERILFLDFIRGLSITIRHAFRRTITTHYPYEKLTPPKRFRGFFGHKVVDGREPQPAFD 71 Query: 54 -------RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 G RC+ C LC+ CP + G + +G RR ++++M+ C +C Sbjct: 72 EWVERFKIEVVPGRSRCVVCLLCKRACPVPQLFEIEGEKLPNGKRRVSVFNMNMMLCTFC 131 Query: 107 GLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 G C +ACPVD + + E A+ +R++ D E L G W+ Sbjct: 132 GFCVDACPVDCLFQSDIHETASYSRKDAVLDLETLERIGRDWQRR 176 >gi|15606521|ref|NP_213901.1| NADH dehydrogenase I chain I [Aquifex aeolicus VF5] gi|81343827|sp|O67337|NUOI1_AQUAE RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|2983739|gb|AAC07300.1| NADH dehydrogenase I chain I [Aquifex aeolicus VF5] Length = 201 Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats. Identities = 39/167 (23%), Positives = 71/167 (42%), Gaps = 17/167 (10%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEH---------- 51 + + + + +F+ + L+ + T YP EK + RFRG H Sbjct: 9 KDYLNILESILFIDFLKGLSVTLKNLLRRPITTEYPKEKLTPPKRFRGAHGHYVWDGTEP 68 Query: 52 -------ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 Y + RC+AC +C+ CP + + +G ++ VR+D++++ C+ Sbjct: 69 DSLKAIEKFMSYEKAKSRCVACYMCQTACPMPTLFRIEAVQLPNGKKKVVRFDMNLLNCL 128 Query: 105 YCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 +CGLC +ACPV + FE A +R+ E L ++ Sbjct: 129 FCGLCVDACPVGCLTMTDIFELANYSRRNEVLRMEDLEKFAIDFKQR 175 >gi|190893221|ref|YP_001979763.1| NADH-ubiquinone oxidoreductase [Rhizobium etli CIAT 652] gi|190698500|gb|ACE92585.1| probable NADH-ubiquinone oxidoreductase protein [Rhizobium etli CIAT 652] Length = 188 Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats. Identities = 49/138 (35%), Positives = 74/138 (53%), Gaps = 2/138 (1%) Query: 7 NVSFLFLKEFVGAFFLCLRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEERCIA 65 + + F + A L L Y F T+ YP EK R+RG H L+R GE +C+A Sbjct: 11 WIGWTFFADLANALTLTLGYMFARPVTMQYPDREKWLPYSRYRGHHFLKRDEEGEIKCVA 70 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 C+LC ICP I + G R +++ID +C++CGLC++ACP DAI G +E Sbjct: 71 CELCARICPCDCIEVVPYED-EKGNRHPAKFEIDTARCLFCGLCEDACPADAIALGQQYE 129 Query: 126 FATETRQELYYDKERLLN 143 F++ + +L ++ LL Sbjct: 130 FSSFSSADLVIGRDDLLA 147 >gi|225874992|ref|YP_002756451.1| NADH dehydrogenase I, I subunit [Acidobacterium capsulatum ATCC 51196] gi|225791517|gb|ACO31607.1| NADH dehydrogenase I, I subunit [Acidobacterium capsulatum ATCC 51196] Length = 183 Score = 110 bits (275), Expect = 6e-23, Method: Composition-based stats. Identities = 52/152 (34%), Positives = 67/152 (44%), Gaps = 10/152 (6%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGS-----TSPRFRGEHALRRYPNGEERCIACKL 68 + R F+ NYP G RFRG H L+R NG E+C+AC L Sbjct: 30 TGIAKGMSITFREMFQPTEVENYPDGPGPSRGAMLQERFRGAHVLQRDENGLEKCVACFL 89 Query: 69 CEAICPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 C A CP+ I IE R R Y+ID +CI+CG C EACP DAI G Sbjct: 90 CAAACPSNCIYIEAADNTEEQRISSAERYAKVYNIDYNRCIFCGYCVEACPTDAITHGHG 149 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRN 155 FE A+ + KE +L + + +N Sbjct: 150 FELASMHATNMIMRKEDMLVQLSTGQPSLAQN 181 >gi|154149243|ref|YP_001405797.1| NADH dehydrogenase subunit I [Campylobacter hominis ATCC BAA-381] gi|189030926|sp|A7HZV6|NUOI_CAMHC RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|153805252|gb|ABS52259.1| NADH-quinone oxidoreductase subunit i (nadhdehydrogenase i subunit i) (ndh-1 subunit i) [Campylobacter hominis ATCC BAA-381] Length = 200 Score = 110 bits (275), Expect = 6e-23, Method: Composition-based stats. Identities = 57/151 (37%), Positives = 81/151 (53%), Gaps = 5/151 (3%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKA--KTTINYPFEKGSTSPRFRGEHAL-RRYPNGE 60 F+ + F E ++ LR K TI YP EK S R+RG H L R +G Sbjct: 20 FKQFLHRTFRGELFIGLWVVLREMLKKNNSHTILYPMEKFELSDRYRGIHKLLRLLESGN 79 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCI C LCE IC + I +E+ DG ++ + Y I+ +C+YCGLC + CP AIV Sbjct: 80 ERCIGCGLCEKICVSNCIRMETTL-GDDGRKKVLNYSINFGRCVYCGLCADVCPELAIVH 138 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESE 151 G ++EFA+E R + K+ LL D +++ Sbjct: 139 GGDYEFASEQRAFFGFKKD-LLTKYDELKNQ 168 >gi|327191030|gb|EGE58084.1| putative NADH-ubiquinone oxidoreductase protein [Rhizobium etli CNPAF512] Length = 188 Score = 110 bits (275), Expect = 6e-23, Method: Composition-based stats. Identities = 48/138 (34%), Positives = 73/138 (52%), Gaps = 2/138 (1%) Query: 7 NVSFLFLKEFVGAFFLCLRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEERCIA 65 + + F + A L Y F T+ YP EK R+RG H L+R GE +C+A Sbjct: 11 WIGWTFFADLANALTLTFGYMFSRPVTMQYPDREKWLPYARYRGHHFLKRDEEGEIKCVA 70 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 C+LC ICP I + G R +++ID +C++CGLC++ACP DAI G +E Sbjct: 71 CELCARICPCDCIEVVPYED-EKGNRHPAKFEIDTARCLFCGLCEDACPADAIALGQQYE 129 Query: 126 FATETRQELYYDKERLLN 143 F++ + +L ++ LL Sbjct: 130 FSSFSSADLVIGRDDLLA 147 >gi|163781771|ref|ZP_02176771.1| NADH dehydrogenase I chain I [Hydrogenivirga sp. 128-5-R1-1] gi|159882991|gb|EDP76495.1| NADH dehydrogenase I chain I [Hydrogenivirga sp. 128-5-R1-1] Length = 213 Score = 110 bits (275), Expect = 6e-23, Method: Composition-based stats. Identities = 42/160 (26%), Positives = 71/160 (44%), Gaps = 20/160 (12%) Query: 12 FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL------------------ 53 +F+ + +R+ F T +YP+EK + RFRG A Sbjct: 17 LFIDFIKGLSVTIRHAFSRTITTHYPYEKLTPPKRFRGFFAHKVVDGNEPQPAYDEWVER 76 Query: 54 --RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 G+ RC+ C LC+ CP + G + +G R ++++++ C +CG C + Sbjct: 77 FKIEVVPGKSRCVVCMLCKRACPVPQLFEIEGKKLDNGRRVVSVFNMNLMLCTFCGFCVD 136 Query: 112 ACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 ACPVD + + E A+ TR++ D E L G W++ Sbjct: 137 ACPVDCLYQTDIHETASYTRKDSILDLELLEKIGKDWQAR 176 >gi|299136503|ref|ZP_07029686.1| NADH-quinone oxidoreductase, chain I [Acidobacterium sp. MP5ACTX8] gi|298601018|gb|EFI57173.1| NADH-quinone oxidoreductase, chain I [Acidobacterium sp. MP5ACTX8] Length = 165 Score = 110 bits (275), Expect = 7e-23, Method: Composition-based stats. Identities = 57/152 (37%), Positives = 71/152 (46%), Gaps = 16/152 (10%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTS-----PRFRGEHALRR 55 M I R + + LR F+ NYP KG RFRG+H L+R Sbjct: 1 MSIIRNVAA------IAKGMSITLREGFQPTEVENYPDGKGPLRGAQLQERFRGKHQLQR 54 Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGT-----RRTVRYDIDMIKCIYCGLCQ 110 NG E+C+AC LC A CPA I IE+ + R Y+ID +CI+CG C Sbjct: 55 DENGLEKCVACFLCAAACPANCIYIEAAENTEEVRISSAERYAKVYNIDYNRCIFCGYCV 114 Query: 111 EACPVDAIVEGPNFEFATETRQELYYDKERLL 142 EACP DAI G FE A+ + KE LL Sbjct: 115 EACPTDAITHGHGFELASLNATSMVMRKEDLL 146 >gi|162148247|ref|YP_001602708.1| NADH-quinone oxidoreductase subunit I [Gluconacetobacter diazotrophicus PAl 5] gi|161786824|emb|CAP56407.1| putative NADH-quinone oxidoreductase subunit I [Gluconacetobacter diazotrophicus PAl 5] Length = 149 Score = 110 bits (274), Expect = 7e-23, Method: Composition-based stats. Identities = 45/110 (40%), Positives = 62/110 (56%), Gaps = 2/110 (1%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 YP K PR+RG L R P+G+ERC+AC LC CP I+++ + G Sbjct: 3 YPETKPPLPPRYRGRIILSRDPDGQERCVACGLCAVACPVDCISLQKTEQD--GRWYPDY 60 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNG 145 + I+ +CI+CG C+EACP AI P+FE + R L Y+KE LL +G Sbjct: 61 FRINFSRCIFCGFCEEACPTYAIQLTPDFEMSEYVRPSLVYEKEDLLISG 110 >gi|195953125|ref|YP_002121415.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Hydrogenobaculum sp. Y04AAS1] gi|195932737|gb|ACG57437.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Hydrogenobaculum sp. Y04AAS1] Length = 202 Score = 110 bits (274), Expect = 8e-23, Method: Composition-based stats. Identities = 39/155 (25%), Positives = 70/155 (45%), Gaps = 17/155 (10%) Query: 8 VSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYP---------- 57 + + +F+ + ++ + T YP EK + RFRG+H Y Sbjct: 16 LESVLFLDFIKGLTITMKNLLRKPITTQYPKEKITPPKRFRGKHGHFVYDGQEPPSLKAI 75 Query: 58 -------NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 G+ RC+AC +C+ CP + + DGT++ VR+D++++ C++CGLC Sbjct: 76 EGFMSFEKGKSRCVACYMCQTACPMPTLFRIEAVQMPDGTKKVVRFDMNLLNCLFCGLCV 135 Query: 111 EACPVDAIVEGPNFEFATETRQELYYDKERLLNNG 145 +ACPV+ + E A R + + + G Sbjct: 136 DACPVECLTMSDIHEMAVYRRSQAVIHMDDMEKIG 170 >gi|322435034|ref|YP_004217246.1| NADH-quinone oxidoreductase, chain I [Acidobacterium sp. MP5ACTX9] gi|321162761|gb|ADW68466.1| NADH-quinone oxidoreductase, chain I [Acidobacterium sp. MP5ACTX9] Length = 166 Score = 110 bits (274), Expect = 9e-23, Method: Composition-based stats. Identities = 52/137 (37%), Positives = 66/137 (48%), Gaps = 10/137 (7%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTS-----PRFRGEHALRRYPNGEERCIACKLCE 70 + + F+ NYP KG RFRG+H L+R NG E+C+AC LC Sbjct: 8 IAKGMSITFKEMFQPTEVENYPDGKGPMRGAQFQQRFRGKHQLQRDENGLEKCVACFLCA 67 Query: 71 AICPAQAITIESGPRCHDGT-----RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 A CP+ I IE+ + R Y+ID +CI+CG C EACP DAI G FE Sbjct: 68 AACPSNCIYIEAAENTEEVRISSAERYAKVYNIDYNRCIFCGYCVEACPTDAITHGHGFE 127 Query: 126 FATETRQELYYDKERLL 142 A+ L KE LL Sbjct: 128 LASLNATTLVMRKEDLL 144 >gi|108758967|ref|YP_630943.1| NADH dehydrogenase I subunit I [Myxococcus xanthus DK 1622] gi|122981133|sp|Q1D8T0|NUOI_MYXXD RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|108462847|gb|ABF88032.1| NADH dehydrogenase I, I subunit [Myxococcus xanthus DK 1622] Length = 254 Score = 109 bits (273), Expect = 9e-23, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 70/160 (43%), Gaps = 28/160 (17%) Query: 12 FLKEFVGAFFLCLRYFFKA-------------------KTTINYPFEKGSTSPRFRGEHA 52 ++ + + ++FF+ TT+ YP EK +RG H Sbjct: 18 YVPNLLRGLGITAKHFFRNLFGTRDTNTQVVDRTGASLMTTVAYPEEKPIYPEGYRGLHR 77 Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG--------TRRTVRYDIDMIKCI 104 L +G+ RC+AC +C ICPAQ I IE+G + + ++ ID ++CI Sbjct: 78 LVPREDGKPRCVACYMCATICPAQCIYIEAGEYEDEASDSEDRVIEKYPTQFVIDELRCI 137 Query: 105 YCGLCQEACPVDAIVE-GPNFEFATETRQELYYDKERLLN 143 CGLC +ACP DAI TRQ YD +LL Sbjct: 138 VCGLCVDACPKDAIRMDTYTHTPPEYTRQNFVYDIPKLLK 177 >gi|33864284|ref|NP_895844.1| NADH dehydrogenase subunit I [Prochlorococcus marinus str. MIT 9313] gi|81711995|sp|Q7TUL5|NDHI_PROMM RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName: Full=NAD(P)H dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I; Short=NDH-I gi|33641064|emb|CAE22193.1| putative NADH Dehydrogenase subunit [Prochlorococcus marinus str. MIT 9313] Length = 218 Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + + + T+ YP+EK S R+RG ++CIAC++C +CP Sbjct: 22 LIQGLAVTFDHLRRRPITVQYPYEKLIPSERYRGRI-----HYEFDKCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + Y ID CI+CG C E CP + + +E A R L Sbjct: 77 NLPVVDWVMNKETKKKELRNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAYDRHSLN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|167463146|ref|ZP_02328235.1| NADH dehydrogenase subunit I [Paenibacillus larvae subsp. larvae BRL-230010] Length = 151 Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats. Identities = 43/134 (32%), Positives = 58/134 (43%), Gaps = 7/134 (5%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 +K + + L+ K T YP RFRG +CI C +C + Sbjct: 1 MKGIIKGLGVTLKSMVSKKVTYAYPDAPLQMPDRFRGIQHFEPD-----KCIVCNMCAKV 55 Query: 73 CPAQAITIESGPRC--HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 CP IT+ P + YDI+ CI C C E CP +AIV NFE +T + Sbjct: 56 CPTDCITLTGKPNPDPEKKGKVIDTYDINFEICILCDFCTEVCPTEAIVMTGNFELSTYS 115 Query: 131 RQELYYDKERLLNN 144 R EL+ + E L NN Sbjct: 116 RDELFKNMEWLANN 129 >gi|319760609|ref|YP_004124547.1| NADH-quinone oxidoreductase subunit I [Candidatus Blochmannia vafer str. BVAF] gi|318039323|gb|ADV33873.1| NADH-quinone oxidoreductase subunit I [Candidatus Blochmannia vafer str. BVAF] Length = 181 Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats. Identities = 46/145 (31%), Positives = 69/145 (47%), Gaps = 3/145 (2%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + +F + + ++ R F + T YP S R+RG L R G Sbjct: 1 MIKLKQFFIHIF--SILRSIWMVGRQAFNQRETQMYPDITCKVSSRYRGRIILTRDKLGN 58 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERC+AC LC CP I+++ G + I+ +CI+CG+C+EACP AI Sbjct: 59 ERCVACNLCAVSCPVGCISLKKSETID-GRWYPDFFRINFSRCIFCGMCEEACPTAAIQL 117 Query: 121 GPNFEFATETRQELYYDKERLLNNG 145 +FE + R +L Y+K LL +G Sbjct: 118 ISDFEMSDFKRGDLVYEKSDLLVSG 142 >gi|237756344|ref|ZP_04584894.1| NADH-quinone oxidoreductase, subunit i 2 [Sulfurihydrogenibium yellowstonense SS-5] gi|237691495|gb|EEP60553.1| NADH-quinone oxidoreductase, subunit i 2 [Sulfurihydrogenibium yellowstonense SS-5] Length = 230 Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats. Identities = 45/180 (25%), Positives = 78/180 (43%), Gaps = 27/180 (15%) Query: 8 VSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALR------------- 54 V +F +F+ +++ +K T+++P+E + RFRG H LR Sbjct: 14 VEKIFFLDFIKGLKTTIKHLWKKVITVDFPYEVVTPPARFRGIHGLRTVDGTENPEFDSW 73 Query: 55 -------RYPNGEERCIACKLCEAICPAQAITIE-------SGPRCHDGTRRTVRYDIDM 100 GE RCIACK C+A CP + H G + +++D+ Sbjct: 74 VKRLKIKPPEPGETRCIACKFCQAACPVPELFDIQSEKLDVPEDHPHYGLKVMTVFNMDL 133 Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDS 160 KC +CGLC +ACP D I+ ++ ++ TR+ DK+ L + + + + + Sbjct: 134 SKCTFCGLCTQACPTDCIIMTDIYDLSSYTRKSWVLDKDVLTQIANDFVARRGKEKFDEK 193 >gi|118340561|gb|ABK80611.1| putative 4Fe-4S ferredoxin subunit I, iron-sulfur binding domain [uncultured marine Nitrospinaceae bacterium] Length = 189 Score = 109 bits (272), Expect = 2e-22, Method: Composition-based stats. Identities = 47/171 (27%), Positives = 74/171 (43%), Gaps = 23/171 (13%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFF----------------KAKTTINYPFEKGSTS 44 M + + ++ E + +L R FF + T+ YP E+ Sbjct: 11 MTWWEKS----YIPEILKGMWLTSRRFFHNLFGFIPFFLGTEKDRRIMTVYYPEEQVEYP 66 Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC---HDGTRRTVRYDIDMI 101 +RG L + +G+ C+AC LCE CPA I I + R ++ID Sbjct: 67 IAYRGRPVLAQNEDGQPACVACGLCEIACPAYCIDIVPAENTGKQNQYERWPEVFNIDYA 126 Query: 102 KCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEI 152 CI+CG C+EACP +AI + E + R+++ Y KE+LL + I Sbjct: 127 ICIFCGNCEEACPEEAIFMSDDCEISMLDRKQMLYTKEQLLTPVADLQKRI 177 >gi|124024377|ref|YP_001018684.1| NADH dehydrogenase subunit I [Prochlorococcus marinus str. MIT 9303] gi|156632624|sp|A2CD59|NDHI_PROM3 RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName: Full=NAD(P)H dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I; Short=NDH-I gi|123964663|gb|ABM79419.1| putative NADH Dehydrogenase subunit [Prochlorococcus marinus str. MIT 9303] Length = 218 Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + + + T+ YP+EK S R+RG ++CIAC++C +CP Sbjct: 22 LIQGLAVTFDHLRRRPITVQYPYEKLIPSERYRGRI-----HYEFDKCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + Y ID CI+CG C E CP + + +E A R L Sbjct: 77 NLPVVDWVMNKETKKKELRNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAYDRHSLN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|251799769|ref|YP_003014500.1| NADH dehydrogenase subunit I [Paenibacillus sp. JDR-2] gi|247547395|gb|ACT04414.1| NADH-quinone oxidoreductase, chain I [Paenibacillus sp. JDR-2] Length = 149 Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 57/134 (42%), Gaps = 7/134 (5%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + V + L+ K T +YP E RFRG CI C C I Sbjct: 1 MNGLVQGLGVTLKSMVSKKVTTSYPDEPFLMPDRFRGIQHFIPD-----LCIVCNQCARI 55 Query: 73 CPAQAITIESGPRCHD--GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 CP IT+ P + +D++ CI C LC E CP +AIV +FE + + Sbjct: 56 CPTDCITLTGKPNPDPAKKGKVIDTFDLNFEICILCDLCTEVCPTEAIVMTNHFELSAYS 115 Query: 131 RQELYYDKERLLNN 144 R +L+ D E L +N Sbjct: 116 RDDLFKDVEWLTDN 129 >gi|32267094|ref|NP_861126.1| NADH dehydrogenase subunit I [Helicobacter hepaticus ATCC 51449] gi|81665422|sp|Q7VFT0|NUOI_HELHP RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|32263146|gb|AAP78192.1| donor-ubiquinone reductase I [Helicobacter hepaticus ATCC 51449] Length = 212 Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats. Identities = 53/138 (38%), Positives = 68/138 (49%), Gaps = 3/138 (2%) Query: 7 NVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEERCIA 65 + F + L FF K TI+YP E SPR+R H L R + ERCI Sbjct: 28 TLKTSFSLDLFSGLKTALGAFFSPKVTIHYPLESAPLSPRYRAIHKLQRLLESENERCIG 87 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 C LCE IC + I I + DG ++ + Y I+ +CIYCGLC E CP AIV G E Sbjct: 88 CGLCEKICTSNCIRIITDK-GEDGRKKILNYSINFGRCIYCGLCAEVCPELAIVHGDLVE 146 Query: 126 FATETRQELYYDKERLLN 143 A+ R + K +LL Sbjct: 147 NASTQRAFFGF-KPQLLE 163 >gi|116747653|ref|YP_844340.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|156632692|sp|A0LEQ3|NUOI1_SYNFM RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName: Full=NADH dehydrogenase I subunit I 1; AltName: Full=NDH-1 subunit I 1 gi|116696717|gb|ABK15905.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Syntrophobacter fumaroxidans MPOB] Length = 149 Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 38/125 (30%), Positives = 58/125 (46%), Gaps = 1/125 (0%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPN-GEERCIACKLCEAI 72 V + R + T+ YP E + SP FRG L+ + + G +CIAC CE + Sbjct: 12 WSLVEGMRVTFRRLLRPVVTVQYPREVVTLSPAFRGHIELKSFADTGTHKCIACGTCERM 71 Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 CP+ I ++ G + Y ID +C CG+C E+CP + +E A E+R Sbjct: 72 CPSNVIKVQGTKAQPKGAKVATHYVIDFTRCSLCGICVESCPTGTLQYSTEYELAGESRW 131 Query: 133 ELYYD 137 + D Sbjct: 132 DGVID 136 >gi|313903490|ref|ZP_07836881.1| NADH-quinone oxidoreductase, chain I [Thermaerobacter subterraneus DSM 13965] gi|313466311|gb|EFR61834.1| NADH-quinone oxidoreductase, chain I [Thermaerobacter subterraneus DSM 13965] Length = 159 Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 2/147 (1%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEERCIACKLCEAI 72 K V + R + T+NYP E+ +RG L G+ C AC LC Sbjct: 12 KSLVAGHAVTWRSAARPPVTVNYPDERPDLPKGYRGIPVLKTNLETGDLNCTACGLCARS 71 Query: 73 CPAQAITIESGPRCHDGT-RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 CP I + + RR ++IDM +C+ C LC EACP DA+ +FE A + Sbjct: 72 CPVNVIEVIEETDENGKRLRRPKVFNIDMSRCMVCNLCVEACPFDALEMANHFEIADYSV 131 Query: 132 QELYYDKERLLNNGDRWESEIVRNIVT 158 L ++KE+L ++++ + Sbjct: 132 PNLIFNKEQLAEIWKQYDAVRLAGGEK 158 >gi|225850949|ref|YP_002731183.1| NADH-quinone oxidoreductase subunit i [Persephonella marina EX-H1] gi|225646012|gb|ACO04198.1| NADH-quinone oxidoreductase subunit i [Persephonella marina EX-H1] Length = 200 Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 45/162 (27%), Positives = 72/162 (44%), Gaps = 17/162 (10%) Query: 7 NVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHA-------------- 52 N +F +F+ + R + T +PFEK + RFRG HA Sbjct: 14 NRERIFFVDFIKGMRVTFRNLLRKTVTTAFPFEKLTPPKRFRGTHAHRVKNGKEPPSFKV 73 Query: 53 ---LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 GE RC+AC +C CP + + DG ++ VR+D++++ C+YCGLC Sbjct: 74 IEKFMDIDTGESRCVACYMCMQACPVPFLFNIEAVQLPDGRKKVVRFDMNLLNCMYCGLC 133 Query: 110 QEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 EACPVD ++ +E A+ R + + G ++ Sbjct: 134 TEACPVDCLIMTDIYETASYHRASCVLHIDDMAKRGIDFDRR 175 >gi|317121161|ref|YP_004101164.1| NADH-quinone oxidoreductase, chain I [Thermaerobacter marianensis DSM 12885] gi|315591141|gb|ADU50437.1| NADH-quinone oxidoreductase, chain I [Thermaerobacter marianensis DSM 12885] Length = 159 Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats. Identities = 42/147 (28%), Positives = 65/147 (44%), Gaps = 2/147 (1%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEERCIACKLCEAI 72 K V + R + T+NYP E+ +RG L G+ C AC LC Sbjct: 12 KSIVVGHAVTWRSTTRPPVTVNYPDERPDLPKGYRGIPVLKTNLETGQLNCTACGLCARS 71 Query: 73 CPAQAITIESGPRCHDGT-RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 CP I + + RR ++IDM +C+ C LC EACP DA+ +FE A + Sbjct: 72 CPVNVIEVVEETDENGKRLRRPKVFNIDMSRCMVCNLCVEACPFDALEMANHFEIADYSV 131 Query: 132 QELYYDKERLLNNGDRWESEIVRNIVT 158 L ++KE+L ++++ + Sbjct: 132 PNLIFNKEQLAEIWKQYDAVRLAGGEK 158 >gi|152993799|ref|YP_001359520.1| NADH dehydrogenase subunit I [Sulfurovum sp. NBC37-1] gi|151425660|dbj|BAF73163.1| NADH-quinone oxidoreductase, chain I [Sulfurovum sp. NBC37-1] Length = 207 Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats. Identities = 53/153 (34%), Positives = 75/153 (49%), Gaps = 8/153 (5%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYF----FKA-KTTINYPFEKGSTSPRFRGEH-ALR 54 M F+ V+ F E + + +R F+ T+ YPFEK SPR+R H LR Sbjct: 29 MDKFKQVVNRTFKLELLVGLGVTMREMINALFRGQMHTVKYPFEKLPISPRYRAIHDMLR 88 Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 +G RCI C LCE IC + IT+++ + + Y I+ +CI+CG C E CP Sbjct: 89 LLESGHYRCIGCGLCEKICISNCITMDTR-YDENQRKEVSEYTINFGRCIFCGYCAEVCP 147 Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLNNGDR 147 AIV G +E A+E R E +L D+ Sbjct: 148 ELAIVHGQRYETASEQRASFSL-FEDMLTPIDK 179 >gi|242310562|ref|ZP_04809717.1| NADH-quinone oxidoreductase subunit I [Helicobacter pullorum MIT 98-5489] gi|239522960|gb|EEQ62826.1| NADH-quinone oxidoreductase subunit I [Helicobacter pullorum MIT 98-5489] Length = 204 Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats. Identities = 61/168 (36%), Positives = 87/168 (51%), Gaps = 10/168 (5%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKT-TINYPFEKGSTSPRFRGEHAL-RRYPNG 59 + F + E +L L+ F KA+ T+ YP EK SPR+R H L R +G Sbjct: 18 QKFISFWNRALKGELFVGLWLVLKEFCKAQIHTVQYPLEKLPLSPRYRAVHELKRLLESG 77 Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 ERCI C LCE IC + I +E+G D ++ Y I+ +CIYCGLC E CP AIV Sbjct: 78 NERCIGCGLCEKICVSNCIRMETG-YGEDKRKKVFEYTINFGRCIYCGLCAEVCPELAIV 136 Query: 120 EGPNFEFATETR------QELYYDKERLLNNGDRWESEIVRNIVTDSP 161 G +E A+E R +++ +++L GD E E V ++ D+ Sbjct: 137 HGKRYENASEQRASFSLKEDMLTPMDKVLKGGDS-EFEGVGSVSVDAD 183 >gi|170077547|ref|YP_001734185.1| NADH dehydrogenase subunit I [Synechococcus sp. PCC 7002] gi|75527215|sp|Q8KX59|NDHI_SYNP2 RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName: Full=NAD(P)H dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I; Short=NDH-I gi|22651979|gb|AAN03534.1|AF381034_2 NADH dehydrogenase subunit I [Synechococcus sp. PCC 7002] gi|169885216|gb|ACA98929.1| NADH-plastoquinone oxidoreductase, I subunit [Synechococcus sp. PCC 7002] Length = 203 Score = 107 bits (268), Expect = 4e-22, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 52/122 (42%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + + T+ YP+EK S RFRG +CIAC++C +CP Sbjct: 22 IGQGLSVTFDHMRRRPVTVQYPYEKLIPSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + Y ID CI+CG C E CP + + +E AT R EL Sbjct: 77 NLPVVDWEFDKSIKKKTLKHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELATYDRHELN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|300775181|ref|ZP_07085043.1| NADH-quinone oxidoreductase subunit I [Chryseobacterium gleum ATCC 35910] gi|300505921|gb|EFK37057.1| NADH-quinone oxidoreductase subunit I [Chryseobacterium gleum ATCC 35910] Length = 185 Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats. Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 11/144 (7%) Query: 11 LFLKEFVGAFFLCLRYFFKA-----KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 ++L + ++ + +YP + + +RG+H L+R G ERC A Sbjct: 21 IYLPAIFTGMGITFKHAVRTVIKGAPAVYSYPEVQKPRTTIWRGQHVLKRDEEGRERCTA 80 Query: 66 CKLCEAICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 C LC CPA+AIT+ + R + Y+I+M++CI+CG+C+EACP AI Sbjct: 81 CGLCAVACPAEAITMTAAERTKEEKHLYREEKYASVYEINMLRCIFCGMCEEACPKSAIY 140 Query: 120 EGPNFEFATETRQELYYDKERLLN 143 R Y K++L+ Sbjct: 141 LTDRLVDVETNRGSFIYGKDKLVE 164 >gi|209522711|ref|ZP_03271269.1| NADH-plastoquinone oxidoreductase, I subunit [Arthrospira maxima CS-328] gi|209496760|gb|EDZ97057.1| NADH-plastoquinone oxidoreductase, I subunit [Arthrospira maxima CS-328] Length = 207 Score = 107 bits (268), Expect = 5e-22, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + + T+ YP+EK S RFRG +CI+C++C +CP Sbjct: 22 IGQGLSVTFDHMKRRPITVQYPYEKLIPSERFRGRIHFEFD-----KCISCEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ ++ Y ID CI+CG C E CP + + +E A R EL Sbjct: 77 NLPVVDWEFNRETKKKKLKHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAYDRHELN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|308275208|emb|CBX31805.1| NADH-quinone oxidoreductase subunit I 1 [uncultured Desulfobacterium sp.] Length = 152 Score = 107 bits (267), Expect = 5e-22, Method: Composition-based stats. Identities = 38/143 (26%), Positives = 61/143 (42%), Gaps = 3/143 (2%) Query: 4 FRCNVSFLFL--KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEH-ALRRYPNGE 60 F+ V +F K + + ++ F+ T+ YP +K +P FRG A+ Sbjct: 7 FKQYVKEIFTGSKSLIIGMGITFKHMFRPIVTVQYPRQKPIMTPHFRGHIEAILFDDTKS 66 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C+AC LC CP+ I ++ + +Y ID KC CGLC + CP + Sbjct: 67 HHCVACGLCARTCPSHVIKVQGEKTKAGDRKYGKQYFIDFTKCSLCGLCVDVCPEKTLKF 126 Query: 121 GPNFEFATETRQELYYDKERLLN 143 +E A +R + D + L Sbjct: 127 SDEYELAFYSRWDGVMDIMQRLE 149 >gi|187736098|ref|YP_001878210.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Akkermansia muciniphila ATCC BAA-835] gi|187426150|gb|ACD05429.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Akkermansia muciniphila ATCC BAA-835] Length = 187 Score = 107 bits (267), Expect = 5e-22, Method: Composition-based stats. Identities = 49/157 (31%), Positives = 78/157 (49%), Gaps = 22/157 (14%) Query: 11 LFLKEFVGAFFLCLRYFF-------KAK---------TTINYPFEKGS--TSPRFRGEHA 52 +L+ +G +L +R+ + K T+ YP + +RG Sbjct: 17 FYLQSILGGLWLTIRHLVLALLGKSRNKKELAGSGIGVTMQYPEARWDKHLPKYYRGAPV 76 Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR----YDIDMIKCIYCGL 108 L + +G ERC++C+LCE ICPA+AITI GP + + + IDM++CIYCG+ Sbjct: 77 LVKGEDGRERCVSCQLCEFICPARAITITPGPIQEGPWGKVEKAPREFQIDMLRCIYCGM 136 Query: 109 CQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNG 145 C+EACP AI N+ F + + ++K +L G Sbjct: 137 CEEACPEQAIFMSHNYLFTPTDKTQAIHNKAKLYELG 173 >gi|148240626|ref|YP_001226013.1| NADH dehydrogenase subunit I [Synechococcus sp. WH 7803] gi|156632628|sp|A5GP51|NDHI_SYNPW RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName: Full=NAD(P)H dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I; Short=NDH-I gi|147849165|emb|CAK24716.1| NAD(P)H-quinone oxidoreductase subunit I [Synechococcus sp. WH 7803] Length = 218 Score = 107 bits (267), Expect = 5e-22, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + + T+ YP+EK S R+RG ++CIAC++C +CP Sbjct: 22 LTQGLAVTFDHMKRRPVTVQYPYEKLIPSERYRGRI-----HYEFDKCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + Y ID CI+CG C E CP + + +E A R L Sbjct: 77 NLPVVDWVMNKETKKKELRNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAFDRHSLN 136 Query: 136 YD 137 +D Sbjct: 137 FD 138 >gi|87123593|ref|ZP_01079444.1| NADH dehydrogenase I chain I (or NdhI) [Synechococcus sp. RS9917] gi|86169313|gb|EAQ70569.1| NADH dehydrogenase I chain I (or NdhI) [Synechococcus sp. RS9917] Length = 218 Score = 107 bits (267), Expect = 5e-22, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + + T+ YP+EK S R+RG ++CIAC++C +CP Sbjct: 22 LTQGLAVTFDHMKRRPVTVQYPYEKLIPSERYRGRI-----HYELDKCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + Y ID CI+CG C E CP + + +E A R L Sbjct: 77 NLPVVDWVMNKETKKKDLRNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAFDRHSLN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|218439484|ref|YP_002377813.1| NADH dehydrogenase subunit I [Cyanothece sp. PCC 7424] gi|226724529|sp|B7KK60|NDHI_CYAP7 RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName: Full=NAD(P)H dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I; Short=NDH-I gi|218172212|gb|ACK70945.1| NADH-plastoquinone oxidoreductase, I subunit [Cyanothece sp. PCC 7424] Length = 200 Score = 107 bits (267), Expect = 5e-22, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + + T+ YP+EK S RFRG +CIAC++C +CP Sbjct: 22 IGQGLAVTFDHMRRRPVTVQYPYEKLIPSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + Y ID CI+CG C E CP + + +E A+ R EL Sbjct: 77 NLPVVDWEFNKAVKKKELKHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELASYDRHELN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|34556907|ref|NP_906722.1| NADH dehydrogenase subunit I [Wolinella succinogenes DSM 1740] gi|81707394|sp|Q7MA42|NUOI_WOLSU RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|34482622|emb|CAE09622.1| NADH DEHYDROGENASE I CHAIN I [Wolinella succinogenes] Length = 205 Score = 107 bits (267), Expect = 5e-22, Method: Composition-based stats. Identities = 57/157 (36%), Positives = 81/157 (51%), Gaps = 8/157 (5%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKT-TINYPFEKGSTSPRFRGEHAL-RRYPN 58 +++FR +VS E +L LR + T YP EK SPR+R H L R + Sbjct: 24 LQVFRRSVS----GELFKGLWLVLREMLRFNIHTTQYPKEKLPLSPRYRAIHELLRLLES 79 Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 G ERCI C LCE IC + I +E+ DG ++ Y I+ +CI+CG C E CP AI Sbjct: 80 GNERCIGCGLCEKICISNCIRMETS-YGEDGRKKVHEYTINFGRCIFCGFCAEVCPELAI 138 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRN 155 V G +E A+E R KE +L +R+ ++ + Sbjct: 139 VHGGRYENASEQRAHFGL-KEDMLTPMERFMNQGQKE 174 >gi|284050278|ref|ZP_06380488.1| NADH dehydrogenase subunit I [Arthrospira platensis str. Paraca] gi|291568240|dbj|BAI90512.1| NADH dehydrogenase subunit I [Arthrospira platensis NIES-39] Length = 207 Score = 107 bits (267), Expect = 5e-22, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + + T+ YP+EK S RFRG +CI+C++C +CP Sbjct: 22 IGQGLSVTFDHMKRRPITVQYPYEKLIPSERFRGRIHFEFD-----KCISCEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ ++ Y ID CI+CG C E CP + + +E A R EL Sbjct: 77 NLPVVDWEFNRETKKKKLKHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAYDRHELN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|57505808|ref|ZP_00371733.1| NADH2 dehydrogenase (ubiquinone) I chain I Cj1571c [Campylobacter upsaliensis RM3195] gi|57015838|gb|EAL52627.1| NADH2 dehydrogenase (ubiquinone) I chain I Cj1571c [Campylobacter upsaliensis RM3195] Length = 216 Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats. Identities = 57/167 (34%), Positives = 78/167 (46%), Gaps = 13/167 (7%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKA--KTTINYPFEKGSTSPRFRGEHAL-RRYPN 58 R + +V E ++ +R K TI YPFEK R+R H L R + Sbjct: 23 RALKRSVKL----ELFVGLWVVMRELLKKGNSATIKYPFEKVQIDNRYRAVHRLMRFIES 78 Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ERCI C LCE IC + I +E+ +G ++ Y I++ +CIYCG C E CP AI Sbjct: 79 ENERCIGCGLCEKICISNCIRMETSLD-ENGRKKANNYSINLGRCIYCGFCAEVCPELAI 137 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRW----ESEIVRNIVTDSP 161 V G +E A E R Y KE L D+ E E ++ D+ Sbjct: 138 VHGKEYENAAEQRSYFGY-KEDFLTPIDKLKNQVEFEGAGSLRKDAD 183 >gi|206970194|ref|ZP_03231147.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus cereus AH1134] gi|206734771|gb|EDZ51940.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus cereus AH1134] Length = 142 Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats. Identities = 44/147 (29%), Positives = 59/147 (40%), Gaps = 7/147 (4%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 +K L K K T +YP + RFRG E+CI C C I Sbjct: 1 MKGLFKGLKYTLSNLSKKKVTYDYPNQPLPLPDRFRGIQKFY-----PEKCIVCNQCSNI 55 Query: 73 CPAQAITIESGPRCHD--GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 CP I + + YDI+ CI C LC E CP +AIV NFE A + Sbjct: 56 CPTDCIQLTGKKHPDPTKKGKIIDTYDINFEICILCDLCTEVCPTEAIVMTNNFELAEYS 115 Query: 131 RQELYYDKERLLNNGDRWESEIVRNIV 157 R +L+ + + L N + E+ N Sbjct: 116 RDDLFKNLQWLDENDENDENVRKENKA 142 >gi|33866803|ref|NP_898362.1| NADH dehydrogenase subunit I [Synechococcus sp. WH 8102] gi|81712227|sp|Q7U403|NDHI_SYNPX RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName: Full=NAD(P)H dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I; Short=NDH-I gi|33639404|emb|CAE08788.1| NADH dehydrogenase I chain I (or NdhI) [Synechococcus sp. WH 8102] Length = 215 Score = 107 bits (266), Expect = 6e-22, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + + + T+ YP+EK S R+RG ++CIAC++C +CP Sbjct: 22 LAQGFSVTFDHMKRRPVTVQYPYEKLIPSERYRGRI-----HYEFDKCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + Y ID CI+CG C E CP + + +E A R L Sbjct: 77 NLPVVDWVMNKATKKKELRNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAFDRHSLN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|296268312|ref|YP_003650944.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Thermobispora bispora DSM 43833] gi|296091099|gb|ADG87051.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermobispora bispora DSM 43833] Length = 234 Score = 107 bits (266), Expect = 6e-22, Method: Composition-based stats. Identities = 44/136 (32%), Positives = 58/136 (42%), Gaps = 13/136 (9%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + LR+ + T YP K PR RG AL EE C C LC CP Sbjct: 13 LAKGLGVTLRHMLRKSDTQQYPEVKPDLPPRSRGVIALV-----EENCTVCMLCARECPD 67 Query: 76 QAITIESGPRC--------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 I I+S R+ ID C+YCG+C E CP DA+ P FE+A Sbjct: 68 WCIYIDSHKETLPAPEGGRPRVRNVLDRFAIDFSLCMYCGICVEVCPFDALFWSPEFEYA 127 Query: 128 TETRQELYYDKERLLN 143 ++L ++K+RL Sbjct: 128 EYDIRDLLHEKDRLRE 143 >gi|307152384|ref|YP_003887768.1| NADH-plastoquinone oxidoreductase, I subunit [Cyanothece sp. PCC 7822] gi|306982612|gb|ADN14493.1| NADH-plastoquinone oxidoreductase, I subunit [Cyanothece sp. PCC 7822] Length = 196 Score = 107 bits (266), Expect = 7e-22, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + + T+ YP+EK S RFRG +CIAC++C +CP Sbjct: 22 IGQGLAVTFDHMRRRPVTVQYPYEKLIPSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + Y ID CI+CG C E CP + + +E A+ R EL Sbjct: 77 NLPVVDWEFNKAIKKKELKHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELASYDRHELN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|67920416|ref|ZP_00513936.1| NADH-plastoquinone oxidoreductase, subunit I:NADH-quinone oxidoreductase, chain I [Crocosphaera watsonii WH 8501] gi|67857900|gb|EAM53139.1| NADH-plastoquinone oxidoreductase, subunit I:NADH-quinone oxidoreductase, chain I [Crocosphaera watsonii WH 8501] Length = 196 Score = 107 bits (266), Expect = 7e-22, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 53/122 (43%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + + T+ YP+EK S RFRG ++CIAC++C +CP Sbjct: 22 IGQGLSVTFDHMRRRPVTVQYPYEKLIPSERFRGRI-----HYEFDKCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + Y ID CI+CG C E CP + + +E AT R EL Sbjct: 77 NLPVVDWEFNKASKKKELKHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELATYDRHELN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|319650857|ref|ZP_08004994.1| NADH dehydrogenase subunit I [Bacillus sp. 2_A_57_CT2] gi|317397455|gb|EFV78156.1| NADH dehydrogenase subunit I [Bacillus sp. 2_A_57_CT2] Length = 139 Score = 107 bits (266), Expect = 7e-22, Method: Composition-based stats. Identities = 44/136 (32%), Positives = 58/136 (42%), Gaps = 7/136 (5%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + L+ + K T +YP E RFRG E+CI C C I Sbjct: 1 MLGLAKGLSYTLKNLTRKKVTYDYPNEPLPLPDRFRGIQKFY-----PEKCIVCNQCANI 55 Query: 73 CPAQAI--TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 CP I T + P + YDI+ CI C LC E CP +AI+ NFE A + Sbjct: 56 CPTDCIQLTGKKHPDPAKKGKIIDTYDINFEICILCDLCTEVCPTEAIIMTNNFELAEYS 115 Query: 131 RQELYYDKERLLNNGD 146 R EL+ + E L N + Sbjct: 116 RDELFKNLEWLDENDE 131 >gi|304407744|ref|ZP_07389395.1| NADH-quinone oxidoreductase, chain I [Paenibacillus curdlanolyticus YK9] gi|304343227|gb|EFM09070.1| NADH-quinone oxidoreductase, chain I [Paenibacillus curdlanolyticus YK9] Length = 149 Score = 107 bits (266), Expect = 7e-22, Method: Composition-based stats. Identities = 43/137 (31%), Positives = 59/137 (43%), Gaps = 7/137 (5%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 +K + L+ K T +YP R+RG CI C C I Sbjct: 1 MKGIFKGMGVTLKAMTAPKVTTSYPDAPYFMPERYRGIQHFEPD-----LCIVCNQCVRI 55 Query: 73 CPAQAITIESGPRCHD--GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 CP IT+ P + +D++ CI C LC E CP +AIV NFE A+ + Sbjct: 56 CPTDCITLTGKPNPDPDKKGKVIDTFDLNFEICILCDLCTEVCPTEAIVMTGNFELASYS 115 Query: 131 RQELYYDKERLLNNGDR 147 R EL+ DK+ L +N R Sbjct: 116 RDELFKDKQWLTDNDTR 132 >gi|16332085|ref|NP_442813.1| NADH dehydrogenase subunit I [Synechocystis sp. PCC 6803] gi|128917|sp|P26525|NDHI_SYNY3 RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName: Full=NAD(P)H dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I; Short=NDH-I gi|47556|emb|CAA44375.1| NDHI [Synechocystis sp. PCC 6803] gi|1001394|dbj|BAA10884.1| NADH dehydrogenase subunit; NdhI [Synechocystis sp. PCC 6803] Length = 193 Score = 107 bits (266), Expect = 8e-22, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + + T+ YP+EK S RFRG +CIAC++C +CP Sbjct: 23 IGQGLAVTFDHMSRRPITVQYPYEKLIPSERFRGRIHFEFD-----KCIACEVCVRVCPI 77 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + Y ID CI+CG C E CP + + +E A R +L Sbjct: 78 NLPVVDWEFNKAVKKKELKHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAYDRHDLN 137 Query: 136 YD 137 YD Sbjct: 138 YD 139 >gi|238061176|ref|ZP_04605885.1| 4Fe-4S ferredoxin iron-sulfur binding protein [Micromonospora sp. ATCC 39149] gi|237882987|gb|EEP71815.1| 4Fe-4S ferredoxin iron-sulfur binding protein [Micromonospora sp. ATCC 39149] Length = 226 Score = 106 bits (265), Expect = 8e-22, Method: Composition-based stats. Identities = 45/134 (33%), Positives = 57/134 (42%), Gaps = 13/134 (9%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 V + LR + TT YP PR RG AL E C C LC CP Sbjct: 28 LVKGLAVTLRTMTRRSTTQQYPDVAPELPPRSRGVIALL-----AENCTVCMLCARECPD 82 Query: 76 QAITIESGPRC--------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 I I+S R+DID C+YCG+C E CP DA+ P FE+A Sbjct: 83 WCIYIDSHKEEVAVPGAARPRQRNVLDRFDIDFSLCMYCGICVEVCPFDALYWSPEFEYA 142 Query: 128 TETRQELYYDKERL 141 ++L +DK+ L Sbjct: 143 EYDIRDLLHDKDHL 156 >gi|78213919|ref|YP_382698.1| NADH dehydrogenase subunit I [Synechococcus sp. CC9605] gi|110287713|sp|Q3AGY9|NDHI_SYNSC RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName: Full=NAD(P)H dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I; Short=NDH-I gi|78198378|gb|ABB36143.1| NADH-plastoquinone oxidoreductase, I subunit [Synechococcus sp. CC9605] Length = 215 Score = 106 bits (265), Expect = 8e-22, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + + + T+ YP+EK S R+RG ++CIAC++C +CP Sbjct: 22 LAQGFSVTFDHMQRRPVTVQYPYEKLIPSERYRGRI-----HYEFDKCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + Y ID CI+CG C E CP + + +E A R L Sbjct: 77 NLPVVDWVMNKATKKKELRNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAFDRHSLN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|218245872|ref|YP_002371243.1| NADH dehydrogenase subunit I [Cyanothece sp. PCC 8801] gi|257058920|ref|YP_003136808.1| NADH dehydrogenase subunit I [Cyanothece sp. PCC 8802] gi|226724530|sp|B7K0U6|NDHI_CYAP8 RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName: Full=NAD(P)H dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I; Short=NDH-I gi|218166350|gb|ACK65087.1| NADH-plastoquinone oxidoreductase, I subunit [Cyanothece sp. PCC 8801] gi|256589086|gb|ACU99972.1| NADH-plastoquinone oxidoreductase, I subunit [Cyanothece sp. PCC 8802] Length = 193 Score = 106 bits (265), Expect = 9e-22, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 52/122 (42%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + + T+ YP+EK S RFRG +CIAC++C +CP Sbjct: 22 IGQGLSVTFDHMRRRPVTVQYPYEKLIPSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + Y ID CI+CG C E CP + + +E AT R EL Sbjct: 77 NLPVVDWEFNKAVKKKELKHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELATYDRHELN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|159036135|ref|YP_001535388.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Salinispora arenicola CNS-205] gi|157914970|gb|ABV96397.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Salinispora arenicola CNS-205] Length = 216 Score = 106 bits (265), Expect = 9e-22, Method: Composition-based stats. Identities = 45/136 (33%), Positives = 58/136 (42%), Gaps = 13/136 (9%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 V + L+ + T YP + PR RG AL EE C C LC CP Sbjct: 25 LVKGLAVTLKTMTRRSATQQYPDVAPALPPRSRGVIALL-----EENCTVCMLCARECPD 79 Query: 76 QAITIESGPRC--------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 I I+S R+DID C+YCG+C E CP DA+ P FE+A Sbjct: 80 WCIYIDSHKEEVAVPGATRPRQRNVLDRFDIDFSLCMYCGICIEVCPFDALYWSPEFEYA 139 Query: 128 TETRQELYYDKERLLN 143 ++L +DKE L Sbjct: 140 EYDIRDLLHDKEHLSE 155 >gi|315638070|ref|ZP_07893255.1| NADH-quinone oxidoreductase subunit I [Campylobacter upsaliensis JV21] gi|315481918|gb|EFU72537.1| NADH-quinone oxidoreductase subunit I [Campylobacter upsaliensis JV21] Length = 216 Score = 106 bits (265), Expect = 9e-22, Method: Composition-based stats. Identities = 57/167 (34%), Positives = 77/167 (46%), Gaps = 13/167 (7%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKA--KTTINYPFEKGSTSPRFRGEHAL-RRYPN 58 R + +V E ++ +R K TI YPFEK R+R H L R + Sbjct: 23 RALKRSVKL----ELFVGLWVVMRELLKKGNSATIKYPFEKVQIDNRYRAVHRLMRFIES 78 Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ERCI C LCE IC + I +E+ G ++ Y I++ +CIYCG C E CP AI Sbjct: 79 ENERCIGCGLCEKICISNCIRMETSLD-EKGRKKANNYSINLGRCIYCGFCAEVCPELAI 137 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRW----ESEIVRNIVTDSP 161 V G +E A E R Y KE L D+ E E ++ D+ Sbjct: 138 VHGKEYENAAEQRSYFGY-KEDFLTPIDKLKNQVEFEGAGSLRKDAD 183 >gi|315501489|ref|YP_004080376.1| 4fe-4S ferredoxin iron-sulfur binding domain-containing protein [Micromonospora sp. L5] gi|315408108|gb|ADU06225.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Micromonospora sp. L5] Length = 196 Score = 106 bits (265), Expect = 9e-22, Method: Composition-based stats. Identities = 44/134 (32%), Positives = 58/134 (43%), Gaps = 13/134 (9%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 V + L+ + TT YP + PR RG AL EE C C LC CP Sbjct: 12 LVKGLAVTLKTMTRRSTTQQYPDVEPELPPRSRGVIALL-----EENCTVCMLCARECPD 66 Query: 76 QAITIESGPRC--------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 I I+S ++DID C+YCG+C E CP DA+ P FE+A Sbjct: 67 WCIYIDSHKEEVAVPGAARPRQRNVLDKFDIDFSLCMYCGICVEVCPFDALYWSPEFEYA 126 Query: 128 TETRQELYYDKERL 141 + L +DK+ L Sbjct: 127 EYDIKNLLHDKDHL 140 >gi|302870008|ref|YP_003838645.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Micromonospora aurantiaca ATCC 27029] gi|302572867|gb|ADL49069.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Micromonospora aurantiaca ATCC 27029] Length = 196 Score = 106 bits (265), Expect = 9e-22, Method: Composition-based stats. Identities = 44/134 (32%), Positives = 58/134 (43%), Gaps = 13/134 (9%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 V + L+ + TT YP + PR RG AL EE C C LC CP Sbjct: 12 LVKGLAVTLKTMTRRSTTQQYPDVEPELPPRSRGVIALL-----EENCTVCMLCARECPD 66 Query: 76 QAITIESGPRC--------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 I I+S ++DID C+YCG+C E CP DA+ P FE+A Sbjct: 67 WCIYIDSHKEEVAVPGAARPRQRNVLDKFDIDFSLCMYCGICVEVCPFDALYWSPEFEYA 126 Query: 128 TETRQELYYDKERL 141 + L +DK+ L Sbjct: 127 EYDIKNLLHDKDHL 140 >gi|254423733|ref|ZP_05037451.1| NADH-plastoquinone oxidoreductase, I subunit [Synechococcus sp. PCC 7335] gi|196191222|gb|EDX86186.1| NADH-plastoquinone oxidoreductase, I subunit [Synechococcus sp. PCC 7335] Length = 212 Score = 106 bits (265), Expect = 9e-22, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + + T+ YP+EK S R+RG +CIAC++C +CP Sbjct: 22 IGQGLSVTFDHMKRRPVTVQYPYEKVIPSERYRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + Y ID CI+CG C E CP + + +E + R +L Sbjct: 77 NLPVVDWEFNKAAKKKVLNHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSAYDRHDLN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|113955570|ref|YP_731812.1| NADH dehydrogenase subunit I [Synechococcus sp. CC9311] gi|123327562|sp|Q0I6W0|NDHI_SYNS3 RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName: Full=NAD(P)H dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I; Short=NDH-I gi|113882921|gb|ABI47879.1| NADH-plastoquinone oxidoreductase, I subunit [Synechococcus sp. CC9311] Length = 219 Score = 106 bits (265), Expect = 9e-22, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + + T+ YP+EK S R+RG ++CIAC++C +CP Sbjct: 22 LTQGLSVTFDHMKRRPVTVQYPYEKLIPSERYRGRI-----HYEFDKCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + Y ID CI+CG C E CP + + +E A R L Sbjct: 77 NLPVVDWVMNKETKKKELRNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAFDRHSLN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|325277470|ref|ZP_08143076.1| NADH dehydrogenase subunit I [Pseudomonas sp. TJI-51] gi|324097399|gb|EGB95639.1| NADH dehydrogenase subunit I [Pseudomonas sp. TJI-51] Length = 141 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 47/103 (45%), Positives = 62/103 (60%), Gaps = 1/103 (0%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 PR+RG L R P+GEERC+AC LC CP I+++ DG + I+ + Sbjct: 1 MPPRYRGRIVLTRDPDGEERCVACNLCAVACPVGCISLQKAE-TEDGRWYPEFFRINFSR 59 Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNG 145 CI+CGLC+EACP AI P+FE A RQ+L Y+KE LL +G Sbjct: 60 CIFCGLCEEACPTTAIQLTPDFEMAEFKRQDLVYEKEDLLISG 102 >gi|120538|sp|Q00236|NDHI_PLEBO RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName: Full=NAD(P)H dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I; Short=NDH-I gi|216819|dbj|BAA00815.1| NADH-ubiquinone oxidoreductase 23 kDa subunit homolog [Leptolyngbya boryana IAM M-101] Length = 194 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + + T+ YP+EK S RFRG +CIAC++C +CP Sbjct: 22 IGQGLSVTFDHMRRRPITVQYPYEKLILSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ ++ Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 NLPVVDWEFNKETKKKKLNHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|254496130|ref|ZP_05109029.1| NADH dehydrogenase I, truncated I subunit [Legionella drancourtii LLAP12] gi|254354671|gb|EET13307.1| NADH dehydrogenase I, truncated I subunit [Legionella drancourtii LLAP12] Length = 113 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 68/114 (59%), Positives = 78/114 (68%), Gaps = 1/114 (0%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 ALRRYPNGEERCIACKLCEA+CPA AITIES PR DG+RRT RYDIDM KCI CGLC Sbjct: 1 MLALRRYPNGEERCIACKLCEAVCPALAITIESEPR-EDGSRRTTRYDIDMFKCINCGLC 59 Query: 110 QEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 +E+CPVD+IV P + R + KE+LL GD E + + D YR Sbjct: 60 EESCPVDSIVVTPIHHYHISERGQNIMTKEKLLALGDLMEPRLAADRAADEKYR 113 >gi|260434445|ref|ZP_05788415.1| NADH-plastoquinone oxidoreductase, i subunit [Synechococcus sp. WH 8109] gi|260412319|gb|EEX05615.1| NADH-plastoquinone oxidoreductase, i subunit [Synechococcus sp. WH 8109] Length = 215 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + + + T+ YP+EK S R+RG ++CIAC++C +CP Sbjct: 22 LAQGFSVTFDHMQRRPVTVQYPYEKLIPSERYRGRI-----HYEFDKCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + Y ID CI+CG C E CP + + +E A R L Sbjct: 77 NLPVVDWVMNKATKKKELRNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAFDRHSLN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|297192748|ref|ZP_06910146.1| NADH-quinone oxidoreductase subunit I 2 [Streptomyces pristinaespiralis ATCC 25486] gi|197721065|gb|EDY64973.1| NADH-quinone oxidoreductase subunit I 2 [Streptomyces pristinaespiralis ATCC 25486] Length = 241 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 41/139 (29%), Positives = 56/139 (40%), Gaps = 14/139 (10%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + LR K T YP + PR RG L EE C C LC C Sbjct: 7 SGLAKGLAVTLRTMTKKTVTAQYPDVQPELPPRSRGVIGLF-----EENCTVCMLCAREC 61 Query: 74 PAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 P I I+S R+ ID C+YCG+C E CP DA+ P F Sbjct: 62 PDWCIYIDSHKETVPAAVPGGRERSRNVLDRFAIDFSLCMYCGICIEVCPFDALFWSPEF 121 Query: 125 EFATETRQELYYDKERLLN 143 E+A ++L +++++L Sbjct: 122 EYAETDIRDLTHERDKLRE 140 >gi|89095638|ref|ZP_01168532.1| NADH dehydrogenase subunit I [Bacillus sp. NRRL B-14911] gi|89089384|gb|EAR68491.1| NADH dehydrogenase subunit I [Bacillus sp. NRRL B-14911] Length = 139 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 45/136 (33%), Positives = 57/136 (41%), Gaps = 7/136 (5%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + L + K T NYP E RFRG E+CI C C I Sbjct: 1 MLGLAKGLKYTLSNLARKKVTYNYPKEPLPLPDRFRGIQKFY-----PEKCIVCNQCANI 55 Query: 73 CPAQAI--TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 CP I T + P + YDI+ CI C LC E CP +AI+ NFE A + Sbjct: 56 CPTDCIQLTGKKHPDPAKKGKIIDTYDINFEICILCDLCTEVCPTEAIIMTNNFELAEYS 115 Query: 131 RQELYYDKERLLNNGD 146 R EL+ + E L N + Sbjct: 116 RDELFKNLEWLDENDE 131 >gi|237752484|ref|ZP_04582964.1| NADH-quinone oxidoreductase subunit I [Helicobacter winghamensis ATCC BAA-430] gi|229375973|gb|EEO26064.1| NADH-quinone oxidoreductase subunit I [Helicobacter winghamensis ATCC BAA-430] Length = 218 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 58/169 (34%), Positives = 78/169 (46%), Gaps = 8/169 (4%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKT-TINYPFEKGSTSPRFRGEHAL-RRYPNG 59 + F + E +L + KA+ T+ YP EK S R+R H L R +G Sbjct: 18 QKFVRFWNRALKGELFVGLWLVFKELCKAQIHTVQYPLEKLPLSSRYRAVHELKRLLDSG 77 Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 ERCI C LCE IC A I +E+ D + Y I+ +CIYCGLC E CP AIV Sbjct: 78 NERCIGCGLCEKICVANCIRMETS-YGEDKRKAVTEYSINFGRCIYCGLCAEVCPELAIV 136 Query: 120 EGPNFEFATETRQELYYDKERLLNN-----GDRWESEIVRNIVTDSPYR 163 G +E A E R K+ L G+ E + V ++ D+ R Sbjct: 137 HGGRYENACEQRASFALKKDMLTPIEKVLSGNDCEFDGVGSVSVDADRR 185 >gi|152977482|ref|YP_001376999.1| NADH dehydrogenase subunit I [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152026234|gb|ABS24004.1| NADH-quinone oxidoreductase, chain I [Bacillus cytotoxicus NVH 391-98] Length = 139 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 44/141 (31%), Positives = 58/141 (41%), Gaps = 7/141 (4%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 +K + L K K T +YP + RFRG E+CI C C I Sbjct: 1 MKGLLKGLKYTLSNLSKKKVTYDYPNQPLPLPDRFRGIQKFY-----PEKCIVCNQCANI 55 Query: 73 CPAQAITIESGPRCHD--GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 CP I + + YDI+ CI C LC E CP +AIV NFE A T Sbjct: 56 CPTNCIQLTGKKHPDPTKKGKIIDTYDINFEICILCDLCTEVCPTEAIVMTNNFELAEYT 115 Query: 131 RQELYYDKERLLNNGDRWESE 151 R +L+ + + L N + E Sbjct: 116 RDDLFKNLQWLDENDENVRKE 136 >gi|228994014|ref|ZP_04153916.1| NADH-quinone oxidoreductase, chain I [Bacillus pseudomycoides DSM 12442] gi|229000083|ref|ZP_04159653.1| NADH-quinone oxidoreductase, chain I [Bacillus mycoides Rock3-17] gi|229007602|ref|ZP_04165197.1| NADH-quinone oxidoreductase, chain I [Bacillus mycoides Rock1-4] gi|228753740|gb|EEM03183.1| NADH-quinone oxidoreductase, chain I [Bacillus mycoides Rock1-4] gi|228759620|gb|EEM08596.1| NADH-quinone oxidoreductase, chain I [Bacillus mycoides Rock3-17] gi|228765812|gb|EEM14464.1| NADH-quinone oxidoreductase, chain I [Bacillus pseudomycoides DSM 12442] Length = 139 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 46/141 (32%), Positives = 59/141 (41%), Gaps = 7/141 (4%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 +K L K K T +YP + RFRG E+CI C C I Sbjct: 1 MKGLFKGLKYTLSNLSKKKVTYDYPNQPLPLPDRFRGIQKFY-----PEKCIVCNQCANI 55 Query: 73 CPAQAI--TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 CP I T + P + YDI+ CI C LC E CP +AIV NFE A T Sbjct: 56 CPTDCIQLTGKKHPDPAKKGKIIDTYDINFEICILCDLCTEVCPTEAIVMTNNFELAEYT 115 Query: 131 RQELYYDKERLLNNGDRWESE 151 R +L+ + + L N + E Sbjct: 116 RDDLFKNLQWLDENDENVRKE 136 >gi|282897414|ref|ZP_06305416.1| NADH-plastoquinone oxidoreductase, subunit I [Raphidiopsis brookii D9] gi|281198066|gb|EFA72960.1| NADH-plastoquinone oxidoreductase, subunit I [Raphidiopsis brookii D9] Length = 194 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + + T+ YP+EK RFRG ++CIAC++C +CP Sbjct: 22 IGQGLAVTFDHMQRRPVTVQYPYEKLIPGERFRGRI-----HYEFDKCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ ++ Y ID CI+CG C E CP + + +E AT R EL Sbjct: 77 NLPVVDWEMDKATKKKKLKHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELATYDRHELN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|126659017|ref|ZP_01730158.1| NADH dehydrogenase subunit I [Cyanothece sp. CCY0110] gi|126619674|gb|EAZ90402.1| NADH dehydrogenase subunit I [Cyanothece sp. CCY0110] Length = 196 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + + T+ YP+EK S R+RG +CIAC++C +CP Sbjct: 22 IGQGLSVTFDHMRRRPVTVQYPYEKLIPSERYRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + Y ID CI+CG C E CP + + +E A R EL Sbjct: 77 NLPVVDWEFNKDAKKKELKHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAYDRHELN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|313681402|ref|YP_004059140.1| NADH dehydrogenase subunit i [Sulfuricurvum kujiense DSM 16994] gi|313154262|gb|ADR32940.1| NADH dehydrogenase subunit I [Sulfuricurvum kujiense DSM 16994] Length = 207 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 49/145 (33%), Positives = 71/145 (48%), Gaps = 4/145 (2%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKT-TINYPFEKGSTSPRFRGEHAL-RRYPNGEE 61 F+ + E ++ LR K T+ YP EK PR+R H L R + +G E Sbjct: 34 FKQVLKRALRGELFVGLWVVLREMIKFDIHTVQYPKEKLPIGPRYRAVHKLLRLWESGYE 93 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCI C LCE IC + I +++ + + Y I++ +CI+CG C E CP AIV G Sbjct: 94 RCIGCGLCEKICISDCIRMDTRID-ENSRKEVTEYSINLGRCIFCGYCAEVCPELAIVHG 152 Query: 122 PNFEFATETRQELYYDKERLLNNGD 146 +E A+E R K+ +L D Sbjct: 153 QRYENASEQRAHFVI-KDDMLTPLD 176 >gi|88809899|ref|ZP_01125405.1| NADH dehydrogenase subunit I [Synechococcus sp. WH 7805] gi|88786283|gb|EAR17444.1| NADH dehydrogenase subunit I [Synechococcus sp. WH 7805] Length = 218 Score = 105 bits (263), Expect = 1e-21, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + + T+ YP+EK S R+RG ++CIAC++C +CP Sbjct: 22 LTQGLAVTFDHMKRRPVTVQYPYEKLIPSERYRGRI-----HYEFDKCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + Y ID CI+CG C E CP + + +E A R L Sbjct: 77 NLPVVDWVMNKETKKKELRNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAFDRHSLN 136 Query: 136 YD 137 +D Sbjct: 137 FD 138 >gi|282900717|ref|ZP_06308659.1| NADH-plastoquinone oxidoreductase, subunit I [Cylindrospermopsis raciborskii CS-505] gi|281194517|gb|EFA69472.1| NADH-plastoquinone oxidoreductase, subunit I [Cylindrospermopsis raciborskii CS-505] Length = 194 Score = 105 bits (263), Expect = 1e-21, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + + T+ YP+EK RFRG ++CIAC++C +CP Sbjct: 22 IGQGLAVTFDHMQRRPVTVQYPYEKLIPGERFRGRI-----HYEFDKCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ ++ Y ID CI+CG C E CP + + +E AT R EL Sbjct: 77 NLPVVDWEMDKATKKKKLKHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELATYDRHELN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|330470209|ref|YP_004407952.1| 4fe-4S ferredoxin iron-sulfur binding domain-containing protein [Verrucosispora maris AB-18-032] gi|328813180|gb|AEB47352.1| 4fe-4S ferredoxin iron-sulfur binding domain-containing protein [Verrucosispora maris AB-18-032] Length = 208 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 46/136 (33%), Positives = 58/136 (42%), Gaps = 13/136 (9%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 V + L+ K TT YP PR RG AL EE C C LC C Sbjct: 13 SGLVKGLAVTLKTMTKRSTTQQYPDVAPELPPRSRGVIALL-----EENCTVCMLCSREC 67 Query: 74 PAQAITIESGPRC--------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 P I I+S R+DID C+YCG+C E CP DA+ P FE Sbjct: 68 PDWCIYIDSHKEEVAVPGAARPRQRNVLDRFDIDFSLCMYCGICIEVCPFDALYWSPEFE 127 Query: 126 FATETRQELYYDKERL 141 +A ++L +DK+ L Sbjct: 128 YAEYDIKDLLHDKDHL 143 >gi|108796796|ref|YP_636373.1| NADH dehydrogenase subunit I [Staurastrum punctulatum] gi|110287708|sp|Q32S03|NDHI_STAPU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|61393564|gb|AAX45705.1| 18 kDa subunit of NADH-plastoquinone oxidoreductase [Staurastrum punctulatum] Length = 181 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 FF+ L + + TI YP+EK S RFRG +CIAC++C +CP Sbjct: 19 IGQGFFVTLDHMNRTPITIQYPYEKLIPSERFRGRIHFEFD-----KCIACEVCVRVCPI 73 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + ++ Y ID CI+CG C E CP + + +E ++ R EL Sbjct: 74 NLPVVDWEFQKSMKKKQLKSYSIDFGVCIFCGNCVEFCPTNCLSMTEEYELSSYDRHELN 133 Query: 136 YD 137 YD Sbjct: 134 YD 135 >gi|124024945|ref|YP_001014061.1| NADH dehydrogenase subunit I [Prochlorococcus marinus str. NATL1A] gi|156632623|sp|A2BZY6|NDHI_PROM1 RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName: Full=NAD(P)H dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I; Short=NDH-I gi|123960013|gb|ABM74796.1| putative NADH Dehydrogenase subunit [Prochlorococcus marinus str. NATL1A] Length = 218 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 V + + + T+ YP+EK S R+RG ++CIAC++C +CP Sbjct: 22 LVDGLGVTFDHMRRRPVTVQYPYEKLIPSERYRGRI-----HYEFDKCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + Y ID CI+CG C E CP + + +E + R L Sbjct: 77 NLPVVDWVMNKETKKKELRNYSIDFGACIFCGNCVEYCPTNCLSMTEEYELSAFDRHSLN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|11467871|ref|NP_050922.1| NADH dehydrogenase subunit I [Nephroselmis olivacea] gi|75274741|sp|Q9TKV4|NDHI_NEPOL RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|5880800|gb|AAD54893.1|AF137379_116 subunit I of NADH-plastoquinoneoxidoreductase [Nephroselmis olivacea] Length = 173 Score = 105 bits (263), Expect = 2e-21, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 55/122 (45%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + + + TI+YP+EK S RFRG +CIAC++C +CP Sbjct: 22 IGQGFGVTFDHMSRRPITIHYPYEKLIPSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + ++ Y ID CI+CG C E CP + + +E + R EL Sbjct: 77 NLPVVDWDYQKSVKKKQLRSYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSVYDRHELN 136 Query: 136 YD 137 +D Sbjct: 137 FD 138 >gi|320106211|ref|YP_004181801.1| NADH-quinone oxidoreductase subunit I [Terriglobus saanensis SP1PR4] gi|319924732|gb|ADV81807.1| NADH-quinone oxidoreductase, chain I [Terriglobus saanensis SP1PR4] Length = 167 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 49/140 (35%), Positives = 65/140 (46%), Gaps = 10/140 (7%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTS-----PRFRGEHALRRYPNGEERCIACK 67 + + + + NYP G RFRG+H L+R NG E+C+AC Sbjct: 7 IAGIAKGMSITFKEMLQPTEVENYPDGPGPMRGAKFQERFRGKHQLQRDENGLEKCVACF 66 Query: 68 LCEAICPAQAITIESGPRCHDGT-----RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 LC A CP+ I IE+ + R Y+ID +CI+CG C EACP DAI G Sbjct: 67 LCAAACPSNCIYIEAAENTEEVRISSAERYAKVYNIDYNRCIFCGYCVEACPTDAITHGH 126 Query: 123 NFEFATETRQELYYDKERLL 142 FE A+ L KE +L Sbjct: 127 GFELASLNATNLVMRKEDML 146 >gi|219848531|ref|YP_002462964.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Chloroflexus aggregans DSM 9485] gi|219542790|gb|ACL24528.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chloroflexus aggregans DSM 9485] Length = 426 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 39/141 (27%), Positives = 54/141 (38%), Gaps = 15/141 (10%) Query: 16 FVGAFFLCLRYF---FK---------AKTTINYPFEKGSTSPRFRGEHALRRYPN-GEER 62 + + +++ FK TI YP E+ +R L G E Sbjct: 31 LLRGMAVIWKHWKESFKLNRSYSQIHGTFTIQYPEERARIPETYRNMPILLYDDETGHEL 90 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVR--YDIDMIKCIYCGLCQEACPVDAIVE 120 C +C CE ICP Q I + G + I+ C+ CG C E CP DAI Sbjct: 91 CTSCFQCERICPPQVIHMTQAKDPATGKPVPAVAEFIIEYDACMSCGFCAEVCPFDAIKM 150 Query: 121 GPNFEFATETRQELYYDKERL 141 FE +T+ L KE+L Sbjct: 151 DHEFELSTDDHARLTVHKEQL 171 >gi|301056762|ref|YP_003794973.1| NADH dehydrogenase subunit I [Bacillus anthracis CI] gi|300378931|gb|ADK07835.1| NADH dehydrogenase subunit I [Bacillus cereus biovar anthracis str. CI] Length = 139 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 45/141 (31%), Positives = 59/141 (41%), Gaps = 7/141 (4%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 +K L K K T +YP + RFRG E+CI C C I Sbjct: 1 MKGLFKGLKYTLSNLSKKKVTYDYPNQPLPLPDRFRGIQKFY-----PEKCIVCNQCSNI 55 Query: 73 CPAQAI--TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 CP I T + P + YDI+ CI C LC E CP +AIV NFE A + Sbjct: 56 CPTDCIQLTGKKHPNPTKKGKIIDTYDINFEICILCDLCTEVCPTEAIVMTNNFELAEYS 115 Query: 131 RQELYYDKERLLNNGDRWESE 151 R +L+ + + L N + E Sbjct: 116 RDDLFKNLQWLDENDENVRKE 136 >gi|172037138|ref|YP_001803639.1| NADH dehydrogenase subunit I [Cyanothece sp. ATCC 51142] gi|254767211|sp|B1WPK3|NDHI_CYAA5 RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName: Full=NAD(P)H dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I; Short=NDH-I gi|171698592|gb|ACB51573.1| NADH dehydrogenase subunit I [Cyanothece sp. ATCC 51142] Length = 196 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + + T+ YP+EK S R+RG +CIAC++C +CP Sbjct: 22 IGQGLSVTFDHMRRRPVTVQYPYEKLIPSERYRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + Y ID CI+CG C E CP + + +E A R EL Sbjct: 77 NLPVVDWEFNKDAKKKELKHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAYDRHELN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|157415787|ref|YP_001483043.1| NADH dehydrogenase subunit I [Campylobacter jejuni subsp. jejuni 81116] gi|172047188|sp|A8FNM9|NUOI_CAMJ8 RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|157386751|gb|ABV53066.1| NADH-quinone oxidoreductase, I subunit [Campylobacter jejuni subsp. jejuni 81116] gi|307748426|gb|ADN91696.1| NADH-quinone oxidoreductase subunit I [Campylobacter jejuni subsp. jejuni M1] gi|315931251|gb|EFV10221.1| NADH-quinone oxidoreductase, chain I family protein [Campylobacter jejuni subsp. jejuni 327] Length = 213 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 58/167 (34%), Positives = 80/167 (47%), Gaps = 13/167 (7%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKA--KTTINYPFEKGSTSPRFRGEHALRRY-PN 58 + FR +V E F+ +R K TI YPFEK R+R H L R+ + Sbjct: 23 QTFRRSVKL----ELFVGLFVMMRELLKRNNSATIKYPFEKVKLDNRYRAVHRLMRFIES 78 Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ERCI C LCE IC + I +E+ +G ++ Y I++ +CIYCG C E CP AI Sbjct: 79 ENERCIGCGLCEKICISNCIRMETSLD-ENGRKKVGNYSINLGRCIYCGFCAEVCPELAI 137 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRW----ESEIVRNIVTDSP 161 V G +E A E R Y K+ L D+ E E ++ D+ Sbjct: 138 VHGTEYENAAEQRSYFGY-KQDFLTPIDKLKNQVEFEGAGSLRKDAD 183 >gi|254457275|ref|ZP_05070703.1| NADH-quinone oxidoreductase subunit i [Campylobacterales bacterium GD 1] gi|207086067|gb|EDZ63351.1| NADH-quinone oxidoreductase subunit i [Campylobacterales bacterium GD 1] Length = 204 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 46/149 (30%), Positives = 73/149 (48%), Gaps = 4/149 (2%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKT-TINYPFEKGSTSPRFRGEHAL-RRYPNGEE 61 F+ V F E ++ +R + T+ YP EK PR+R H + R + + E Sbjct: 31 FKRAVKRTFRGELFVGLWVVMREMIRFDIHTVQYPEEKMPIGPRYRAVHEMKRLWESDAE 90 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCI C LCE IC + I +E+ + + Y I++ +CI+CG C E CP AI G Sbjct: 91 RCIGCGLCEKICISNCIRMET-KIDENSRKEVSEYTINLGRCIFCGYCAEVCPELAITHG 149 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWES 150 +E A++ R+ D +L D+ ++ Sbjct: 150 GEYENASDQREHFV-DYAAMLTPLDKMKA 177 >gi|156598257|gb|ABU85392.1| NADH-plastoquinone oxidoreductase subunit I [Ginkgo biloba] Length = 183 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 40/122 (32%), Positives = 56/122 (45%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK S RFRG +CIAC++C +CP Sbjct: 22 IGQGFIVTLYHMNRLPMTIQYPYEKLIPSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ G +R Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 NLPVVDWKFGEDIGKKRLENYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|72383362|ref|YP_292717.1| NADH dehydrogenase subunit I [Prochlorococcus marinus str. NATL2A] gi|110287704|sp|Q46HL4|NDHI_PROMT RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName: Full=NAD(P)H dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I; Short=NDH-I gi|72003212|gb|AAZ59014.1| NADH-plastoquinone oxidoreductase, subunit I:NADH-quinone oxidoreductase, chain I [Prochlorococcus marinus str. NATL2A] Length = 218 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 V + + + T+ YP+EK S R+RG ++CIAC++C +CP Sbjct: 22 LVDGLGVTFDHMRRRPVTVQYPYEKLIPSERYRGRI-----HYEFDKCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + Y ID CI+CG C E CP + + +E + R L Sbjct: 77 NLPVVDWVMNKETKKKELRNYSIDFGACIFCGNCVEYCPTNCLSMTEEYELSAFDRHSLN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|229076508|ref|ZP_04209470.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus Rock4-18] gi|229099728|ref|ZP_04230654.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus Rock3-29] gi|229105887|ref|ZP_04236513.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus Rock3-28] gi|229118791|ref|ZP_04248141.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus Rock1-3] gi|228664661|gb|EEL20153.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus Rock1-3] gi|228677546|gb|EEL31797.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus Rock3-28] gi|228683698|gb|EEL37650.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus Rock3-29] gi|228706694|gb|EEL58905.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus Rock4-18] Length = 139 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 43/141 (30%), Positives = 57/141 (40%), Gaps = 7/141 (4%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 +K L K K T +YP + RFRG E+CI C C I Sbjct: 1 MKGLFKGLKYTLSNLSKKKVTYDYPNQPLPLPDRFRGIQKFY-----PEKCIVCNQCSNI 55 Query: 73 CPAQAITIESGPRCHD--GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 CP I + + YDI+ CI C LC E CP +AIV NFE A + Sbjct: 56 CPTDCIQLTGKKHPDPTKKGKIIDTYDINFEICILCDLCTEVCPTEAIVMTNNFELAAYS 115 Query: 131 RQELYYDKERLLNNGDRWESE 151 R +L+ + + L N + E Sbjct: 116 RDDLFKNLQWLDENDENVRKE 136 >gi|75908927|ref|YP_323223.1| NADH dehydrogenase subunit I [Anabaena variabilis ATCC 29413] gi|110287695|sp|Q3M9K8|NDHI_ANAVT RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName: Full=NAD(P)H dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I; Short=NDH-I gi|75702652|gb|ABA22328.1| NADH-plastoquinone oxidoreductase, subunit I [Anabaena variabilis ATCC 29413] Length = 194 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + + T+ YP+EK RFRG ++CIAC++C +CP Sbjct: 22 IGQGLSVTFDHMRRRPVTVQYPYEKLIPGERFRGRI-----HYEFDKCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ ++ Y ID CI+CG C E CP + + +E AT R EL Sbjct: 77 NLPVVDWEFDKATKKKKLNHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELATYDRHELN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|83815968|ref|YP_444641.1| NADH dehydrogenase i, i subunit [Salinibacter ruber DSM 13855] gi|83757362|gb|ABC45475.1| NADH dehydrogenase i, i subunit [Salinibacter ruber DSM 13855] Length = 202 Score = 105 bits (262), Expect = 2e-21, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 62/123 (50%), Gaps = 1/123 (0%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 T YP E+ +RG L + RC++C LC CP AI+++S + Sbjct: 5 PTYTFEYPEEQWYPPDSYRGRPVLVE-EDDRPRCVSCNLCARACPPLAISMQSKEVNNVK 63 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWE 149 R ++I+M++CIYCG C+E CP +AIV + ++R E +D + LL ++ + Sbjct: 64 EREPEWFEINMLRCIYCGFCEEVCPEEAIVMSKEHDLTFQSRDEAVFDLDDLLRPSEQMQ 123 Query: 150 SEI 152 + Sbjct: 124 DRL 126 >gi|196228499|ref|ZP_03127366.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chthoniobacter flavus Ellin428] gi|196227902|gb|EDY22405.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chthoniobacter flavus Ellin428] Length = 176 Score = 105 bits (261), Expect = 2e-21, Method: Composition-based stats. Identities = 49/147 (33%), Positives = 74/147 (50%), Gaps = 12/147 (8%) Query: 11 LFLKEFVGAFFLCLRYFFK-----AKTTINYPFEKGS--TSPRFRGEHALRRYPNGEERC 63 ++L V + +++ + K + YP EK +RG L + + ERC Sbjct: 16 IYLPSIVAGLAITIKHLKRMLKGETKVVMQYPEEKWDAHMPEHYRGAPTLVKDEHDRERC 75 Query: 64 IACKLCEAICPAQAITIESGP-----RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +AC+LCE ICP +AITI + +R ++IDMI+CIYCGLC+E CP AI Sbjct: 76 VACQLCEFICPPRAITITPEEIPAESKFAKVEKRPKEFEIDMIRCIYCGLCEEVCPEQAI 135 Query: 119 VEGPNFEFATETRQELYYDKERLLNNG 145 ++ TR E+ +DK +L G Sbjct: 136 FLRKDYAITGTTRAEMKHDKAKLYELG 162 >gi|17227720|ref|NP_484268.1| NADH dehydrogenase subunit I [Nostoc sp. PCC 7120] gi|28201842|sp|Q9WWM6|NDHI_ANASP RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName: Full=NAD(P)H dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I; Short=NDH-I gi|5042149|emb|CAB44669.1| NDH-I protein [Nostoc sp. PCC 7120] gi|17135202|dbj|BAB77748.1| NADH dehydrogenase subunit I [Nostoc sp. PCC 7120] Length = 194 Score = 105 bits (261), Expect = 2e-21, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + + T+ YP+EK RFRG ++CIAC++C +CP Sbjct: 22 IGQGLSVTFDHMRRRPVTVQYPYEKLIPGERFRGRI-----HYEFDKCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ ++ Y ID CI+CG C E CP + + +E AT R EL Sbjct: 77 NLPVVDWEFDKATKKKKLNHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELATYDRHELN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|56750218|ref|YP_170919.1| NADH dehydrogenase subunit I [Synechococcus elongatus PCC 6301] gi|81300153|ref|YP_400361.1| NADH dehydrogenase subunit I [Synechococcus elongatus PCC 7942] gi|81596814|sp|Q5N5L9|NDHI_SYNP6 RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName: Full=NAD(P)H dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I; Short=NDH-I gi|110287711|sp|Q31NJ5|NDHI_SYNE7 RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName: Full=NAD(P)H dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I; Short=NDH-I gi|56685177|dbj|BAD78399.1| NADH dehydrogenase subunit NdhI [Synechococcus elongatus PCC 6301] gi|81169034|gb|ABB57374.1| NADH-plastoquinone oxidoreductase, I subunit NADH-quinone oxidoreductase, chain I [Synechococcus elongatus PCC 7942] Length = 202 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 36/124 (29%), Positives = 54/124 (43%), Gaps = 5/124 (4%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 K + + + T+ YP+EK S R+RG ++CIAC++C +C Sbjct: 20 KAIGQGLGVTFDHMQRRPVTVQYPYEKLIPSERYRGRI-----HYEFDKCIACEVCVRVC 74 Query: 74 PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 P ++ + Y ID CI+CG C E CP + + +E AT R E Sbjct: 75 PINLPVVDWVYNKETKKKDLKNYSIDFGACIFCGNCVEYCPTNCLSMTEEYELATYDRHE 134 Query: 134 LYYD 137 L YD Sbjct: 135 LNYD 138 >gi|30023328|ref|NP_834959.1| NADH dehydrogenase subunit I [Bacillus cereus ATCC 14579] gi|30265318|ref|NP_847695.1| NADH dehydrogenase subunit I [Bacillus anthracis str. Ames] gi|42784465|ref|NP_981712.1| NADH dehydrogenase subunit I [Bacillus cereus ATCC 10987] gi|47530856|ref|YP_022205.1| NADH dehydrogenase subunit I [Bacillus anthracis str. 'Ames Ancestor'] gi|47569790|ref|ZP_00240461.1| NADH-ubiquinone oxidoreductase, NQO9 subunit (NQO9) [Bacillus cereus G9241] gi|49188131|ref|YP_031384.1| NADH dehydrogenase subunit I [Bacillus anthracis str. Sterne] gi|49481261|ref|YP_039286.1| NADH dehydrogenase subunit I [Bacillus thuringiensis serovar konkukian str. 97-27] gi|52140266|ref|YP_086564.1| NADH dehydrogenase subunit I [Bacillus cereus E33L] gi|165869867|ref|ZP_02214524.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus anthracis str. A0488] gi|167636391|ref|ZP_02394691.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus anthracis str. A0442] gi|167641705|ref|ZP_02399949.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus anthracis str. A0193] gi|170689352|ref|ZP_02880546.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus anthracis str. A0465] gi|170708836|ref|ZP_02899271.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus anthracis str. A0389] gi|177654093|ref|ZP_02936103.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus anthracis str. A0174] gi|190567689|ref|ZP_03020601.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus anthracis Tsiankovskii-I] gi|196036330|ref|ZP_03103728.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus cereus W] gi|196039456|ref|ZP_03106761.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus cereus NVH0597-99] gi|196045657|ref|ZP_03112887.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus cereus 03BB108] gi|206976926|ref|ZP_03237828.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus cereus H3081.97] gi|217962784|ref|YP_002341360.1| NADH dehydrogenase subunit I [Bacillus cereus AH187] gi|218231784|ref|YP_002370070.1| NADH dehydrogenase subunit I [Bacillus cereus B4264] gi|218900421|ref|YP_002448832.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus cereus G9842] gi|222098766|ref|YP_002532824.1| NADH dehydrogenase subunit i [Bacillus cereus Q1] gi|227818058|ref|YP_002818067.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus anthracis str. CDC 684] gi|228903769|ref|ZP_04067886.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis IBL 4222] gi|228911135|ref|ZP_04074941.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis IBL 200] gi|228924030|ref|ZP_04087306.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228942441|ref|ZP_04104979.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228949015|ref|ZP_04111288.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228955541|ref|ZP_04117545.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228968417|ref|ZP_04129410.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis serovar sotto str. T04001] gi|228975374|ref|ZP_04135930.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982010|ref|ZP_04142304.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis Bt407] gi|228988519|ref|ZP_04148608.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229014463|ref|ZP_04171581.1| NADH-quinone oxidoreductase, chain I [Bacillus mycoides DSM 2048] gi|229020513|ref|ZP_04177260.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus AH1273] gi|229026730|ref|ZP_04183067.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus AH1272] gi|229032926|ref|ZP_04188881.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus AH1271] gi|229050966|ref|ZP_04194516.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus AH676] gi|229072762|ref|ZP_04205962.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus F65185] gi|229082510|ref|ZP_04214973.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus Rock4-2] gi|229094404|ref|ZP_04225477.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus Rock3-42] gi|229112707|ref|ZP_04242243.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus Rock1-15] gi|229130546|ref|ZP_04259502.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus BDRD-Cer4] gi|229142034|ref|ZP_04270559.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus BDRD-ST26] gi|229147835|ref|ZP_04276177.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus BDRD-ST24] gi|229153459|ref|ZP_04281637.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus m1550] gi|229158855|ref|ZP_04286913.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus ATCC 4342] gi|229164240|ref|ZP_04292174.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus R309803] gi|229175968|ref|ZP_04303465.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus MM3] gi|229181543|ref|ZP_04308869.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus 172560W] gi|229193546|ref|ZP_04320491.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus ATCC 10876] gi|229199417|ref|ZP_04326082.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus m1293] gi|229602053|ref|YP_002869510.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus anthracis str. A0248] gi|254686282|ref|ZP_05150141.1| NADH dehydrogenase subunit I [Bacillus anthracis str. CNEVA-9066] gi|254724278|ref|ZP_05186062.1| NADH dehydrogenase subunit I [Bacillus anthracis str. A1055] gi|254735223|ref|ZP_05192932.1| NADH dehydrogenase subunit I [Bacillus anthracis str. Western North America USA6153] gi|254744427|ref|ZP_05202107.1| NADH dehydrogenase subunit I [Bacillus anthracis str. Kruger B] gi|254755731|ref|ZP_05207764.1| NADH dehydrogenase subunit I [Bacillus anthracis str. Vollum] gi|254759536|ref|ZP_05211561.1| NADH dehydrogenase subunit I [Bacillus anthracis str. Australia 94] gi|296505722|ref|YP_003667422.1| NADH dehydrogenase subunit I [Bacillus thuringiensis BMB171] gi|29898889|gb|AAP12160.1| NADH-quinone oxidoreductase chain I [Bacillus cereus ATCC 14579] gi|30259996|gb|AAP29181.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus anthracis str. Ames] gi|42740397|gb|AAS44320.1| NADH dehydrogenase I, I subunit [Bacillus cereus ATCC 10987] gi|47506004|gb|AAT34680.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus anthracis str. 'Ames Ancestor'] gi|47553532|gb|EAL11912.1| NADH-ubiquinone oxidoreductase, NQO9 subunit (NQO9) [Bacillus cereus G9241] gi|49182058|gb|AAT57434.1| NADH dehydrogenase I, I subunit [Bacillus anthracis str. Sterne] gi|49332817|gb|AAT63463.1| NADH dehydrogenase I, subunit I (NADH-quinone oxidoreductase, chain I) [Bacillus thuringiensis serovar konkukian str. 97-27] gi|51973735|gb|AAU15285.1| NADH dehydrogenase I, subunit I (NADH-quinone oxidoreductase, chain I) [Bacillus cereus E33L] gi|164714190|gb|EDR19710.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus anthracis str. A0488] gi|167510330|gb|EDR85732.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus anthracis str. A0193] gi|167528225|gb|EDR91007.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus anthracis str. A0442] gi|170126236|gb|EDS95128.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus anthracis str. A0389] gi|170666720|gb|EDT17489.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus anthracis str. A0465] gi|172080976|gb|EDT66055.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus anthracis str. A0174] gi|190561105|gb|EDV15078.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus anthracis Tsiankovskii-I] gi|195991122|gb|EDX55092.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus cereus W] gi|196023488|gb|EDX62165.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus cereus 03BB108] gi|196029616|gb|EDX68218.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus cereus NVH0597-99] gi|206744892|gb|EDZ56297.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus cereus H3081.97] gi|217063581|gb|ACJ77831.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus cereus AH187] gi|218159741|gb|ACK59733.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus cereus B4264] gi|218544081|gb|ACK96475.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus cereus G9842] gi|221242825|gb|ACM15535.1| NADH dehydrogenase I, subunit I (NADH-quinone oxidoreductase, chain I) [Bacillus cereus Q1] gi|227003411|gb|ACP13154.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus anthracis str. CDC 684] gi|228584131|gb|EEK42284.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus m1293] gi|228589935|gb|EEK47809.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus ATCC 10876] gi|228601911|gb|EEK59406.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus 172560W] gi|228607562|gb|EEK64887.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus MM3] gi|228619262|gb|EEK76154.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus R309803] gi|228624839|gb|EEK81608.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus ATCC 4342] gi|228630063|gb|EEK86714.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus m1550] gi|228635663|gb|EEK92151.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus BDRD-ST24] gi|228641323|gb|EEK97629.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus BDRD-ST26] gi|228652885|gb|EEL08767.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus BDRD-Cer4] gi|228670839|gb|EEL26147.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus Rock1-15] gi|228689005|gb|EEL42831.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus Rock3-42] gi|228700942|gb|EEL53465.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus Rock4-2] gi|228710388|gb|EEL62362.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus F65185] gi|228722424|gb|EEL73819.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus AH676] gi|228728471|gb|EEL79492.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus AH1271] gi|228734578|gb|EEL85235.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus AH1272] gi|228740784|gb|EEL91035.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus AH1273] gi|228746813|gb|EEL96698.1| NADH-quinone oxidoreductase, chain I [Bacillus mycoides DSM 2048] gi|228771235|gb|EEM19712.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228777771|gb|EEM26044.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis Bt407] gi|228784356|gb|EEM32379.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228791276|gb|EEM38885.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis serovar sotto str. T04001] gi|228804163|gb|EEM50778.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228810771|gb|EEM57119.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228817282|gb|EEM63369.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228835520|gb|EEM80885.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228848498|gb|EEM93346.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis IBL 200] gi|228855858|gb|EEN00401.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis IBL 4222] gi|229266461|gb|ACQ48098.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus anthracis str. A0248] gi|296326774|gb|ADH09702.1| NADH dehydrogenase subunit I [Bacillus thuringiensis BMB171] gi|324329243|gb|ADY24503.1| NADH dehydrogenase subunit I [Bacillus thuringiensis serovar finitimus YBT-020] gi|326943093|gb|AEA18989.1| NADH dehydrogenase subunit I [Bacillus thuringiensis serovar chinensis CT-43] Length = 139 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 43/141 (30%), Positives = 57/141 (40%), Gaps = 7/141 (4%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 +K L K K T +YP + RFRG E+CI C C I Sbjct: 1 MKGLFKGLKYTLSNLSKKKVTYDYPNQPLPLPDRFRGIQKFY-----PEKCIVCNQCSNI 55 Query: 73 CPAQAITIESGPRCHD--GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 CP I + + YDI+ CI C LC E CP +AIV NFE A + Sbjct: 56 CPTDCIQLTGKKHPDPTKKGKIIDTYDINFEICILCDLCTEVCPTEAIVMTNNFELAEYS 115 Query: 131 RQELYYDKERLLNNGDRWESE 151 R +L+ + + L N + E Sbjct: 116 RDDLFKNLQWLDENDENVRKE 136 >gi|78183863|ref|YP_376297.1| NADH dehydrogenase subunit I [Synechococcus sp. CC9902] gi|110287712|sp|Q3B074|NDHI_SYNS9 RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName: Full=NAD(P)H dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I; Short=NDH-I gi|78168157|gb|ABB25254.1| NADH-plastoquinone oxidoreductase, subunit I [Synechococcus sp. CC9902] Length = 210 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + + + T+ YP+EK S R+RG ++CIAC++C +CP Sbjct: 22 LAQGFAVTFDHMQRRPVTVQYPYEKLIPSERYRGRI-----HYEFDKCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + Y ID CI+CG C E CP + + +E A R L Sbjct: 77 NLPVVDWVMNKATKKKELRNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAFDRHSLN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|148243377|ref|YP_001228534.1| NADH dehydrogenase subunit I [Synechococcus sp. RCC307] gi|147851687|emb|CAK29181.1| NAD(P)H-quinone oxidoreductase subunit I [Synechococcus sp. RCC307] Length = 212 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + + T+ YP+EK S R+RG ++CIAC++C +CP Sbjct: 35 IARGLSVTFDHLRRRPVTVQYPYEKLIPSERYRGRI-----HYEFDKCIACEVCVRVCPI 89 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + Y ID CI+CG C E CP + + +E A R L Sbjct: 90 NLPVVDWVMNKATKKKELRNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAFDRHSLN 149 Query: 136 YD 137 +D Sbjct: 150 FD 151 >gi|163942983|ref|YP_001647867.1| NADH dehydrogenase subunit I [Bacillus weihenstephanensis KBAB4] gi|229063945|ref|ZP_04200244.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus AH603] gi|229136110|ref|ZP_04264864.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus BDRD-ST196] gi|229170002|ref|ZP_04297695.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus AH621] gi|163865180|gb|ABY46239.1| NADH-quinone oxidoreductase, chain I [Bacillus weihenstephanensis KBAB4] gi|228613520|gb|EEK70652.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus AH621] gi|228647355|gb|EEL03436.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus BDRD-ST196] gi|228716351|gb|EEL68061.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus AH603] Length = 139 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 43/141 (30%), Positives = 57/141 (40%), Gaps = 7/141 (4%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 +K L K K T +YP + RFRG E+CI C C I Sbjct: 1 MKGLFKGLKYTLSNLSKKKVTYDYPNQPLPLPDRFRGIQKFY-----PEKCIVCNQCSNI 55 Query: 73 CPAQAITIESGPRCHD--GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 CP I + + YDI+ CI C LC E CP +AIV NFE A + Sbjct: 56 CPTDCIQLTGKKHPDPTKKGKIIDTYDINFEICILCDLCTEVCPTEAIVMTNNFELAEYS 115 Query: 131 RQELYYDKERLLNNGDRWESE 151 R +L+ + + L N + E Sbjct: 116 RDDLFKNLQWLDENDENIRKE 136 >gi|119485496|ref|ZP_01619824.1| NADH dehydrogenase subunit I [Lyngbya sp. PCC 8106] gi|119457252|gb|EAW38378.1| NADH dehydrogenase subunit I [Lyngbya sp. PCC 8106] Length = 202 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + + T+ YP+EK S RFRG +CI+C++C +CP Sbjct: 22 IGQGLSVTFDHMRRRPITVQYPYEKLIPSERFRGRIHFEFD-----KCISCEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + ++ Y ID CI+CG C E CP + + +E A R EL Sbjct: 77 NLPVVDWEFNKANKKKQLKHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAYDRHELN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|297616447|ref|YP_003701606.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Syntrophothermus lipocalidus DSM 12680] gi|297144284|gb|ADI01041.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Syntrophothermus lipocalidus DSM 12680] Length = 248 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 5/124 (4%) Query: 11 LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70 ++ + + ++FF K T YP E+ PRFRG + E+CI C +C Sbjct: 3 VYGTGLLKGLKVTFKHFFDRKLTEQYPEERPKLYPRFRGRLYI-----EPEKCIVCSICV 57 Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 CP +++E G +R + Y+ID C++C LC E CP + FE+AT + Sbjct: 58 RTCPNGVLSLEEGRDETAKKKRLLSYEIDHQYCMFCNLCVENCPAQCLHFNHEFEWATFS 117 Query: 131 RQEL 134 R +L Sbjct: 118 RDQL 121 >gi|116071525|ref|ZP_01468793.1| NADH dehydrogenase subunit I [Synechococcus sp. BL107] gi|116065148|gb|EAU70906.1| NADH dehydrogenase subunit I [Synechococcus sp. BL107] Length = 210 Score = 105 bits (261), Expect = 3e-21, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + + + T+ YP+EK S R+RG ++CIAC++C +CP Sbjct: 22 LAQGFAVTFDHMQRRPVTVQYPYEKLIPSERYRGRI-----HYEFDKCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + Y ID CI+CG C E CP + + +E A R L Sbjct: 77 NLPVVDWVMNKATKKKELRNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAFDRHSLN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|330850679|ref|YP_004376560.1| NADH-plastoquinone oxidoreductase subunit I [Ptilidium pulcherrimum] gi|302024808|gb|ADK89654.1| NADH-plastoquinone oxidoreductase subunit I [Ptilidium pulcherrimum] Length = 183 Score = 104 bits (260), Expect = 3e-21, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + ++ TI YP+EK S RFRG +CIAC++C +CP Sbjct: 22 IGQGFMVTLDHMNRSPMTIQYPYEKLIPSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + ++ Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 NLPVVDWELKKTMRKKQLKSYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|295697426|ref|YP_003590664.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Bacillus tusciae DSM 2912] gi|295413028|gb|ADG07520.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Bacillus tusciae DSM 2912] Length = 145 Score = 104 bits (260), Expect = 3e-21, Method: Composition-based stats. Identities = 45/136 (33%), Positives = 57/136 (41%), Gaps = 7/136 (5%) Query: 11 LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70 +F + + L+ + K T YP E + RFRG L E+CI C C Sbjct: 1 MFGGGVLKGLTVTLKEMIRPKVTTRYPDETYTFPNRFRGIQKLY-----PEKCIVCNQCA 55 Query: 71 AICPAQAITIESGPRCHD--GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 +CP Q ITI P + ++I CI C LC E CP +AIV FE A Sbjct: 56 MVCPTQCITIRGKPHPDPAKKGKVLETFEIHFDTCILCDLCTEVCPTEAIVMTNQFELAE 115 Query: 129 ETRQELYYDKERLLNN 144 TR L D L N Sbjct: 116 YTRDALQKDMTWLTEN 131 >gi|283956943|ref|ZP_06374415.1| NADH-quinone oxidoreductase, I subunit [Campylobacter jejuni subsp. jejuni 1336] gi|283791444|gb|EFC30241.1| NADH-quinone oxidoreductase, I subunit [Campylobacter jejuni subsp. jejuni 1336] Length = 213 Score = 104 bits (260), Expect = 3e-21, Method: Composition-based stats. Identities = 57/167 (34%), Positives = 79/167 (47%), Gaps = 13/167 (7%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKA--KTTINYPFEKGSTSPRFRGEHALRRY-PN 58 + R +V E F+ +R K TI YPFEK R+R H L R+ + Sbjct: 23 QALRRSVKL----ELFVGLFVMMRELLKRNNSATIKYPFEKVKLDNRYRAVHRLMRFIES 78 Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ERCI C LCE IC + I +E+ +G ++ Y I++ +CIYCG C E CP AI Sbjct: 79 ENERCIGCGLCEKICISNCIRMETSLD-ENGRKKVGNYSINLGRCIYCGFCAEVCPELAI 137 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRW----ESEIVRNIVTDSP 161 V G +E A E R Y K+ L D+ E E ++ D+ Sbjct: 138 VHGTEYENAAEQRSYFGY-KQDFLTPIDKLKNQVEFEGAGSLRKDAD 183 >gi|152990046|ref|YP_001355768.1| NADH dehydrogenase subunit I [Nitratiruptor sp. SB155-2] gi|151421907|dbj|BAF69411.1| NADH-quinone oxidoreductase, chain I [Nitratiruptor sp. SB155-2] Length = 203 Score = 104 bits (260), Expect = 3e-21, Method: Composition-based stats. Identities = 51/150 (34%), Positives = 72/150 (48%), Gaps = 4/150 (2%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKT-TINYPFEKGSTSPRFRGEHAL-RRYPNGEE 61 F+ + E + L + TI YP EK PR+R H L R +G E Sbjct: 32 FKRVLKRSVKLELFVGLRITLLEMIRFNIHTIQYPKEKLPIGPRYRAVHKLLRLLESGNE 91 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCI C LCE IC + I I++ +G + Y I+ +CI+CG C E CP AIV G Sbjct: 92 RCIGCGLCEKICISNCIRIDT-KVDENGRKIPTEYTINFGRCIFCGYCAEVCPELAIVHG 150 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESE 151 ++E A+E R KE +L D+ + + Sbjct: 151 QDYENASEQRAHFAL-KEDMLTPLDKLKEQ 179 >gi|218906472|ref|YP_002454306.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus cereus AH820] gi|225867272|ref|YP_002752650.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus cereus 03BB102] gi|228917904|ref|ZP_04081440.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228930301|ref|ZP_04093307.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228936579|ref|ZP_04099374.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|229124798|ref|ZP_04253977.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus 95/8201] gi|229187520|ref|ZP_04314661.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus BGSC 6E1] gi|218536179|gb|ACK88577.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus cereus AH820] gi|225787244|gb|ACO27461.1| NADH dehydrogenase (ubiquinone), I subunit [Bacillus cereus 03BB102] gi|228595959|gb|EEK53638.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus BGSC 6E1] gi|228658673|gb|EEL14334.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus 95/8201] gi|228823094|gb|EEM68931.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829360|gb|EEM74991.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228841701|gb|EEM86812.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 139 Score = 104 bits (260), Expect = 3e-21, Method: Composition-based stats. Identities = 43/141 (30%), Positives = 57/141 (40%), Gaps = 7/141 (4%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 +K L K K T +YP + RFRG E+CI C C I Sbjct: 1 MKGLFKGLKYTLGNLSKKKVTYDYPNQPLPLPDRFRGIQKFY-----PEKCIVCNQCSNI 55 Query: 73 CPAQAITIESGPRCHD--GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 CP I + + YDI+ CI C LC E CP +AIV NFE A + Sbjct: 56 CPTDCIQLTGKKHPDPTKKGKIIDTYDINFEICILCDLCTEVCPTEAIVMTNNFELAEYS 115 Query: 131 RQELYYDKERLLNNGDRWESE 151 R +L+ + + L N + E Sbjct: 116 RDDLFKNLQWLDENDENVRKE 136 >gi|307069587|ref|YP_003878064.1| putative NADH:ubiquinone oxidoreductase, chain I [Candidatus Zinderia insecticola CARI] gi|306482847|gb|ADM89718.1| putative NADH:ubiquinone oxidoreductase, chain I [Candidatus Zinderia insecticola CARI] Length = 164 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 55/134 (41%), Positives = 82/134 (61%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + + LFL + + A + + F K T YP EK S +FRG HALR Y N + RC Sbjct: 11 LKKKILNLFLIDILKALNITKYFLFSKKITNKYPIEKIPISKKFRGLHALRIYNNKKSRC 70 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 I+CKLCE++CPA AI I++G + R T+ Y I++ KCI+CGLC+ +CPV++IVE Sbjct: 71 ISCKLCESVCPANAINIKTGYNKKNNIRETIEYKINLKKCIFCGLCESSCPVNSIVEFNF 130 Query: 124 FEFATETRQELYYD 137 FE+ + ++ + Sbjct: 131 FEYCFFNKNKMILN 144 >gi|116073963|ref|ZP_01471225.1| NADH dehydrogenase subunit I [Synechococcus sp. RS9916] gi|116069268|gb|EAU75020.1| NADH dehydrogenase subunit I [Synechococcus sp. RS9916] Length = 214 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + + T+ YP+EK S R+RG ++CIAC++C +CP Sbjct: 22 LTQGLAVTFDHMKRRPVTVQYPYEKLIPSERYRGRI-----HYEFDKCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + Y ID CI+CG C E CP + + +E A R L Sbjct: 77 NLPVVDWVMNKATKKKELRNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAFDRHSLN 136 Query: 136 YD 137 +D Sbjct: 137 FD 138 >gi|157165652|ref|YP_001466108.1| NADH dehydrogenase subunit I [Campylobacter concisus 13826] gi|112800556|gb|EAT97900.1| NADH-quinone oxidoreductase subunit i (nadhdehydrogenase i subunit i) (ndh-1 subunit i) [Campylobacter concisus 13826] Length = 212 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 46/164 (28%), Positives = 80/164 (48%), Gaps = 8/164 (4%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYF-FKAKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEE 61 F+ ++ F + + + L+ F T+ YP +K + R+RG H L + + E Sbjct: 22 FKHFIAATFKLDLLVGLKITLKQMLFSKSHTLKYPMQKMELNARYRGIHRLLKFVESENE 81 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCI C LCE IC + I++++ DG ++ Y I++ +C+YCG C + CP AIV G Sbjct: 82 RCIGCGLCEKICVSNCISMKTSL-GEDGRKKVASYTINLSRCVYCGFCADVCPELAIVCG 140 Query: 122 PNFEFATETR-----QELYYDKERLLNNGDRWESEIVRNIVTDS 160 +E A+E + + + ++ L + +E DS Sbjct: 141 QEYEVASENKILFGTKAEFLTDDKFLKDQAEFEGYGALPKNADS 184 >gi|300864218|ref|ZP_07109102.1| NAD(P)H-quinone oxidoreductase subunit I [Oscillatoria sp. PCC 6506] gi|300337792|emb|CBN54248.1| NAD(P)H-quinone oxidoreductase subunit I [Oscillatoria sp. PCC 6506] Length = 196 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 52/122 (42%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + + T+ YP+EK S RFRG +CI+C++C +CP Sbjct: 22 IGQGLSVTFDHMSRRPITVQYPYEKLIPSERFRGRIHFEFD-----KCISCEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ ++ Y ID CI+CG C E CP + + +E A R EL Sbjct: 77 NLPVVDWEFNKETKKKQLKHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAYERHELN 136 Query: 136 YD 137 +D Sbjct: 137 FD 138 >gi|313199667|ref|YP_004021283.1| NADH-plastoquinone oxidoreductase subunit I [Isoetes flaccida] gi|291575396|gb|ADE18109.1| NADH-plastoquinone oxidoreductase subunit I [Isoetes flaccida] Length = 186 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK S RFRG +CIAC++C +CP Sbjct: 22 IGRGFMVTLDHMNRLPMTIQYPYEKLIPSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + + ++ Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 NLPVVDWELKRNMKKKQLKSYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|317123873|ref|YP_004097985.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Intrasporangium calvum DSM 43043] gi|315587961|gb|ADU47258.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Intrasporangium calvum DSM 43043] Length = 329 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 45/138 (32%), Positives = 57/138 (41%), Gaps = 14/138 (10%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 L V R + T YP PR RG AL EE C +C LC Sbjct: 68 LPGLVKGLAATARTLTRHAHTAEYPDVMPKLPPRTRGVIALT-----EENCTSCMLCARE 122 Query: 73 CPAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 CP I I+S R+ ID C+YCG+C E CP DA+ P Sbjct: 123 CPDWCIYIDSHKEEIPATTEGGRARQRNVLDRFAIDFSLCMYCGICVEVCPFDALWWSPE 182 Query: 124 FEFATETRQELYYDKERL 141 FE+A +EL ++K+RL Sbjct: 183 FEYAELDIRELVHEKDRL 200 >gi|284929388|ref|YP_003421910.1| NADH-plastoquinone oxidoreductase subunit I protein [cyanobacterium UCYN-A] gi|284809832|gb|ADB95529.1| NADH-plastoquinone oxidoreductase subunit I protein [cyanobacterium UCYN-A] Length = 197 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + + T+ YP+EK S R+RG + ++CIAC++C CP Sbjct: 22 IGQGLSVTFDHMSRRPITVQYPYEKLIPSERYRGRI-----HHEFDKCIACEVCVRSCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 + + + Y ID CI+CG C E CP + + ++E AT R EL Sbjct: 77 NLPVVNWQFNKENKKKDLKDYSIDFGVCIFCGNCVEYCPTNCLSMTEDYELATYDRHELN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|37520223|ref|NP_923600.1| NADH dehydrogenase subunit I [Gloeobacter violaceus PCC 7421] gi|81711055|sp|Q7NMW1|NDHI_GLOVI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName: Full=NAD(P)H dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I; Short=NDH-I gi|35211216|dbj|BAC88595.1| NADH dehydrogenase subunit I [Gloeobacter violaceus PCC 7421] Length = 209 Score = 104 bits (260), Expect = 4e-21, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + + T+ YP+EK S RFRG +CI+C++C +CP Sbjct: 22 IGQGMGVVFDHMRRKPVTVQYPYEKLIPSERFRGRIHF-----ERPKCISCEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + Y ID CI+CG C E CP + +E + R EL Sbjct: 77 NLPVVDYEFNKETKKKELNSYSIDFGVCIFCGNCVEYCPTSCLSMTEEYELSVYDRHELN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|119513556|ref|ZP_01632573.1| NADH dehydrogenase subunit I [Nodularia spumigena CCY9414] gi|119461789|gb|EAW42809.1| NADH dehydrogenase subunit I [Nodularia spumigena CCY9414] Length = 197 Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + + T+ YP+EK RFRG +CIAC++C +CP Sbjct: 22 IGQGLAVTFDHMQRRPVTVQYPYEKLIPGERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + ++ Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 NLPVVDWEFEKANKKKKLKHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|87301843|ref|ZP_01084677.1| NADH dehydrogenase subunit I [Synechococcus sp. WH 5701] gi|87283411|gb|EAQ75366.1| NADH dehydrogenase subunit I [Synechococcus sp. WH 5701] Length = 203 Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + + T+ YP+EK S R+RG ++CI+C++C +CP Sbjct: 22 ITQGLSVTFDHLRRRPITVQYPYEKLIPSERYRGRI-----HYEFDKCISCEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + Y ID CI+CG C E CP + + +E A R L Sbjct: 77 NLPVVDWVMNKETKKKELKNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAFDRHSLN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|42524471|ref|NP_969851.1| NADH dehydrogenase I chain I [Bdellovibrio bacteriovorus HD100] gi|81697766|sp|Q6MIR9|NUOI_BDEBA RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|39576680|emb|CAE80844.1| NADH dehydrogenase I chain I [Bdellovibrio bacteriovorus HD100] Length = 174 Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats. Identities = 52/150 (34%), Positives = 74/150 (49%), Gaps = 9/150 (6%) Query: 1 MRIFRCN--VSFLFLKEFVGAFFLCLRYFFK------AKTTINYPFEKGSTSPRFRGEHA 52 M + + N S FL +G +++ K T+NYP EK SPRF+G H Sbjct: 1 MSVMQNNSEKSKWFLPGILGGLATTMKHLLKNLFNQKKMMTLNYPEEKYEYSPRFKGNHV 60 Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGP-RCHDGTRRTVRYDIDMIKCIYCGLCQE 111 L +G RC AC LC CPA+ I I + + + Y+ID+++C++CG C+E Sbjct: 61 LTVKKDGSLRCTACMLCATNCPAECIKITAAEHNDPTVEKFPISYEIDILRCVFCGFCEE 120 Query: 112 ACPVDAIVEGPNFEFATETRQELYYDKERL 141 ACPVDAI GP ++ YD L Sbjct: 121 ACPVDAIRLGPEWQTPGVNGANFIYDINHL 150 >gi|159030037|emb|CAO90418.1| ndhI [Microcystis aeruginosa PCC 7806] Length = 190 Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + + T+ YP+EK S R+RG +CIAC++C +CP Sbjct: 22 IGEGLSVTFDHMRRRPITVQYPYEKLIPSERYRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + Y ID CI+CG C E CP + + +E AT R EL Sbjct: 77 NLPVVDWTFNKEIKKKELKHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELATYDRHELN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|316962582|gb|EFV48695.1| NADH dehydrogenase I, I subunit [Trichinella spiralis] Length = 114 Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats. Identities = 82/112 (73%), Positives = 87/112 (77%), Gaps = 1/112 (0%) Query: 11 LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70 +FL E + A F K TINYPFEKG SPRFRGEHALRRYP+GEERCIACKLCE Sbjct: 1 MFLSELIRALGHLFGSFLKEPATINYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCE 60 Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 AICPAQAITIE+ R G+RRT RYDIDM KCIYCGLCQEACPVDAIVE Sbjct: 61 AICPAQAITIEAEERPD-GSRRTTRYDIDMCKCIYCGLCQEACPVDAIVEVN 111 >gi|145592966|ref|YP_001157263.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Salinispora tropica CNB-440] gi|145302303|gb|ABP52885.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Salinispora tropica CNB-440] Length = 216 Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats. Identities = 44/134 (32%), Positives = 58/134 (43%), Gaps = 13/134 (9%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 V + L+ + T YP + PR RG AL EE C C LC CP Sbjct: 25 LVKGLAVTLKTMTRRSATQQYPDVAPALPPRSRGVIALL-----EENCTVCMLCARECPD 79 Query: 76 QAITIESGPRCHD--------GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 I I+S ++DID C+YCG+C E CP DA+ P FE+A Sbjct: 80 WCIYIDSHKEEVMVPGATRSRQRNVLDQFDIDFSLCMYCGICIEVCPFDALYWSPEFEYA 139 Query: 128 TETRQELYYDKERL 141 ++L +DKE L Sbjct: 140 EYDIKDLLHDKEHL 153 >gi|307721742|ref|YP_003892882.1| NADH dehydrogenase subunit I [Sulfurimonas autotrophica DSM 16294] gi|306979835|gb|ADN09870.1| NADH dehydrogenase subunit I [Sulfurimonas autotrophica DSM 16294] Length = 205 Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats. Identities = 47/149 (31%), Positives = 73/149 (48%), Gaps = 4/149 (2%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFK-AKTTINYPFEKGSTSPRFRGEHAL-RRYPNGEE 61 F+ V F E ++ LR + T+ YP EK PR+R H + R + + E Sbjct: 32 FKRVVKRSFKGELFVGLWVVLREMIRFDTHTVKYPEEKMPIGPRYRAVHEMKRLWESDTE 91 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCI C LCE IC + I I++ + + Y I++ +CI+CG C E CP AI G Sbjct: 92 RCIGCGLCEKICISDCIRIDTRID-ENSRKEVSEYTINLGRCIFCGYCAEVCPELAITHG 150 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWES 150 +E A++ R+ E +L D+ ++ Sbjct: 151 GEYENASDQREHFLL-FEDMLTPIDKMKA 178 >gi|298489904|ref|YP_003720081.1| NADH-plastoquinone oxidoreductase subunit I ['Nostoc azollae' 0708] gi|298231822|gb|ADI62958.1| NADH-plastoquinone oxidoreductase, I subunit ['Nostoc azollae' 0708] Length = 194 Score = 104 bits (259), Expect = 4e-21, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + + T+ YP+EK RFRG ++CIAC++C +CP Sbjct: 22 IGQGLSVTFDHMQRRPITVQYPYEKLIPGERFRGRI-----HYEFDKCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ ++ Y ID CI+CG C E CP + + +E A+ R EL Sbjct: 77 NLPVVDWEMDKATKKKKLKHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELASYDRHELN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|57238584|ref|YP_179715.1| NADH dehydrogenase subunit I [Campylobacter jejuni RM1221] gi|81675543|sp|Q5HSM0|NUOI_CAMJR RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|57167388|gb|AAW36167.1| NADH-quinone oxidoreductase, I subunit [Campylobacter jejuni RM1221] gi|315059021|gb|ADT73350.1| NADH-ubiquinone oxidoreductase chain I [Campylobacter jejuni subsp. jejuni S3] Length = 213 Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats. Identities = 57/166 (34%), Positives = 79/166 (47%), Gaps = 13/166 (7%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKA--KTTINYPFEKGSTSPRFRGEHALRRY-PN 58 + R +V E F+ +R K TI YPFEK R+R H L R+ + Sbjct: 23 QALRRSVKL----ELFVGLFVMMRELLKRNNSATIKYPFEKVKLDNRYRAVHRLMRFIES 78 Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ERCI C LCE IC + I +E+ +G ++ Y I++ +CIYCG C E CP AI Sbjct: 79 ENERCIGCGLCEKICISNCIRMETSLD-ENGRKKVGNYSINLGRCIYCGFCAEVCPELAI 137 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRW----ESEIVRNIVTDS 160 V G +E A E R Y K+ L D+ E E ++ D+ Sbjct: 138 VHGTEYENAAEQRSYFGY-KQDFLTPIDKLKNQVEFEGAGSLRKDA 182 >gi|315930446|gb|EFV09510.1| NADH-quinone oxidoreductase, I subunit [Campylobacter jejuni subsp. jejuni 305] Length = 213 Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats. Identities = 57/166 (34%), Positives = 79/166 (47%), Gaps = 13/166 (7%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKA--KTTINYPFEKGSTSPRFRGEHALRRY-PN 58 + R +V E F+ +R K TI YPFEK R+R H L R+ + Sbjct: 23 QALRRSVKL----ELFVGLFVMMRELLKRNNSATIKYPFEKVKLDNRYRAVHRLMRFIES 78 Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ERCI C LCE IC + I +E+ +G ++ Y I++ +CIYCG C E CP AI Sbjct: 79 ENERCIGCGLCEKICISNCIRMETSLD-ENGRKKVENYSINLGRCIYCGFCAEVCPELAI 137 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRW----ESEIVRNIVTDS 160 V G +E A E R Y K+ L D+ E E ++ D+ Sbjct: 138 VHGTEYENAAEQRSYFGY-KQDFLTPIDKLKNQVEFEGAGSLRKDA 182 >gi|86152229|ref|ZP_01070440.1| NADH-quinone oxidoreductase, I subunit [Campylobacter jejuni subsp. jejuni 260.94] gi|88596340|ref|ZP_01099577.1| NADH-quinone oxidoreductase, I subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|315124982|ref|YP_004066986.1| NADH-quinone oxidoreductase, I subunit [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85840718|gb|EAQ57969.1| NADH-quinone oxidoreductase, I subunit [Campylobacter jejuni subsp. jejuni 260.94] gi|88191181|gb|EAQ95153.1| NADH-quinone oxidoreductase, I subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|284926766|gb|ADC29118.1| NADH dehydrogenase I chain I [Campylobacter jejuni subsp. jejuni IA3902] gi|315018704|gb|ADT66797.1| NADH-quinone oxidoreductase, I subunit [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 213 Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats. Identities = 57/166 (34%), Positives = 79/166 (47%), Gaps = 13/166 (7%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKA--KTTINYPFEKGSTSPRFRGEHALRRY-PN 58 + R +V E F+ +R K TI YPFEK R+R H L R+ + Sbjct: 23 QALRRSVKL----ELFVGLFVMMRELLKRNNSATIKYPFEKVKLDNRYRAVHRLMRFIES 78 Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ERCI C LCE IC + I +E+ +G ++ Y I++ +CIYCG C E CP AI Sbjct: 79 ENERCIGCGLCEKICISNCIRMETSLD-ENGRKKVENYSINLGRCIYCGFCAEVCPELAI 137 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRW----ESEIVRNIVTDS 160 V G +E A E R Y K+ L D+ E E ++ D+ Sbjct: 138 VHGTEYENAAEQRSYFGY-KQDFLTPIDKLKNQVEFEGAGSLRKDA 182 >gi|166368385|ref|YP_001660658.1| NADH dehydrogenase subunit I [Microcystis aeruginosa NIES-843] gi|226724531|sp|B0JHQ4|NDHI_MICAN RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName: Full=NAD(P)H dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I; Short=NDH-I gi|166090758|dbj|BAG05466.1| NADH dehydrogenase subunit I [Microcystis aeruginosa NIES-843] Length = 190 Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + + T+ YP+EK S R+RG +CIAC++C +CP Sbjct: 22 IGEGLSVTFDHMRRRPITVQYPYEKLIPSERYRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + Y ID CI+CG C E CP + + +E A+ R EL Sbjct: 77 NLPVVDWTFNKEIKKKELKHYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELASYDRHELN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|305432367|ref|ZP_07401529.1| NADH-quinone oxidoreductase subunit I [Campylobacter coli JV20] gi|304444406|gb|EFM37057.1| NADH-quinone oxidoreductase subunit I [Campylobacter coli JV20] Length = 221 Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats. Identities = 53/154 (34%), Positives = 74/154 (48%), Gaps = 9/154 (5%) Query: 15 EFVGAFFLCLRYFFKA--KTTINYPFEKGSTSPRFRGEHALRRY-PNGEERCIACKLCEA 71 E ++ +R K TI YPFEK R+R H L R+ + ERCI C LCE Sbjct: 32 ELFVGLWVVMREMLKRNNSATIKYPFEKVKLDNRYRAVHRLMRFIESENERCIGCGLCEK 91 Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 IC + I +E+ + ++ Y I++ +CIYCG C E CP AIV G +E A E R Sbjct: 92 ICISNCIRMETSLD-ENARKKVGNYSINLGRCIYCGFCAEVCPELAIVHGTEYENAAEQR 150 Query: 132 QELYYDKERLLNNGDRW----ESEIVRNIVTDSP 161 Y K+ L D+ E E ++ D+ Sbjct: 151 SYFGY-KQDFLTPIDKLKNQVEFEGAGSLRKDAD 183 >gi|113475270|ref|YP_721331.1| NADH dehydrogenase subunit I [Trichodesmium erythraeum IMS101] gi|123161032|sp|Q115G6|NDHI_TRIEI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName: Full=NAD(P)H dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I; Short=NDH-I gi|110166318|gb|ABG50858.1| NADH-plastoquinone oxidoreductase, I subunit [Trichodesmium erythraeum IMS101] Length = 209 Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 52/122 (42%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + + T+ YP+EK S RFRG +CIAC++C +CP Sbjct: 22 IGQGLSVTFDHMSRRPVTVQYPYEKLIPSERFRGRIHFEYD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ ++ Y ID CI+CG C E CP + + +E A R EL Sbjct: 77 NLPVVDWEFNKETKKKKLKHYSIDFGVCIFCGNCVEYCPSNCLSMTEEYELAAYDRHELN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|254431184|ref|ZP_05044887.1| NADH-plastoquinone oxidoreductase, I subunit [Cyanobium sp. PCC 7001] gi|197625637|gb|EDY38196.1| NADH-plastoquinone oxidoreductase, I subunit [Cyanobium sp. PCC 7001] Length = 207 Score = 104 bits (259), Expect = 5e-21, Method: Composition-based stats. Identities = 33/120 (27%), Positives = 51/120 (42%), Gaps = 5/120 (4%) Query: 18 GAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA 77 + + + T+ YP+EK S R+RG ++CIAC++C +CP Sbjct: 24 QGLAVTFDHLRRRPVTVQYPYEKLIPSERYRGRI-----HYEFDKCIACEVCVRVCPINL 78 Query: 78 ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 ++ + Y ID CI+CG C E CP + + +E A R L YD Sbjct: 79 PVVDWVMNKTTKKKELRNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAFDRHSLNYD 138 >gi|255535803|ref|YP_003096174.1| NADH-ubiquinone oxidoreductase chain I [Flavobacteriaceae bacterium 3519-10] gi|255341999|gb|ACU08112.1| NADH-ubiquinone oxidoreductase chain I [Flavobacteriaceae bacterium 3519-10] Length = 182 Score = 104 bits (258), Expect = 5e-21, Method: Composition-based stats. Identities = 43/145 (29%), Positives = 72/145 (49%), Gaps = 8/145 (5%) Query: 7 NVSFLFLKEFVGAFFLCLRYFFK--AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64 + ++L E + + +++ + +YP + + +RG H L+R G ERC Sbjct: 17 FMERIYLPEILKGMAITMKHALQGSKGKVFSYPEVEKPRAKVWRGLHVLKRDEEGRERCT 76 Query: 65 ACKLCEAICPAQAITIESGPRC------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 AC LC +CPA+AIT+ S R + + Y+I+M++CI+CGLC+EACP A+ Sbjct: 77 ACGLCAVVCPAEAITMTSAERTREEKHLYREEKYASVYEINMLRCIFCGLCEEACPKSAV 136 Query: 119 VEGPNFEFATETRQELYYDKERLLN 143 R Y K++L+ Sbjct: 137 YLTDRLVDVEVNRGSFIYGKDKLVE 161 >gi|57168324|ref|ZP_00367458.1| NADH2 dehydrogenase (ubiquinone) I chain I Cj1571c [Campylobacter coli RM2228] gi|57020132|gb|EAL56806.1| NADH2 dehydrogenase (ubiquinone) I chain I Cj1571c [Campylobacter coli RM2228] Length = 221 Score = 104 bits (258), Expect = 5e-21, Method: Composition-based stats. Identities = 53/154 (34%), Positives = 73/154 (47%), Gaps = 9/154 (5%) Query: 15 EFVGAFFLCLRYFFKA--KTTINYPFEKGSTSPRFRGEHAL-RRYPNGEERCIACKLCEA 71 E ++ +R K TI YPFEK R+R H L R + ERCI C LCE Sbjct: 32 ELFVGLWVVMREMLKRNNSATIKYPFEKVKLDNRYRAVHRLMRFIESENERCIGCGLCEK 91 Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 IC + I +E+ + ++ Y I++ +CIYCG C E CP AIV G +E A E R Sbjct: 92 ICISNCIRMETSLD-ENARKKVGNYSINLGRCIYCGFCAEVCPELAIVHGTEYENAAEQR 150 Query: 132 QELYYDKERLLNNGDRW----ESEIVRNIVTDSP 161 Y K+ L D+ E E ++ D+ Sbjct: 151 SYFGY-KQDFLTPIDKLKNQVEFEGAGSLRKDAD 183 >gi|86152969|ref|ZP_01071174.1| nadh dehydrogenase i chain i [Campylobacter jejuni subsp. jejuni HB93-13] gi|85843854|gb|EAQ61064.1| nadh dehydrogenase i chain i [Campylobacter jejuni subsp. jejuni HB93-13] Length = 213 Score = 104 bits (258), Expect = 5e-21, Method: Composition-based stats. Identities = 57/167 (34%), Positives = 79/167 (47%), Gaps = 13/167 (7%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKA--KTTINYPFEKGSTSPRFRGEHALRRY-PN 58 + R +V E F+ +R K TI YPFEK R+R H L R+ + Sbjct: 23 QALRRSVKL----ELFIGLFVMMRELLKRNNSATIKYPFEKVKLDNRYRAVHRLMRFIES 78 Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ERCI C LCE IC + I +E+ +G ++ Y I++ +CIYCG C E CP AI Sbjct: 79 ENERCIGCGLCEKICISNCIRMETSLD-ENGRKKVGNYSINLGRCIYCGFCAEVCPELAI 137 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRW----ESEIVRNIVTDSP 161 V G +E A E R Y K+ L D+ E E ++ D+ Sbjct: 138 VHGTEYENAAEQRSYFGY-KQDFLTPIDKLKNQVEFEGAGSLRKDAD 183 >gi|124302960|ref|YP_001023755.1| NADH dehydrogenase subunit I [Angiopteris evecta] gi|156632604|sp|A2T387|NDHI_ANGEV RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|110628358|gb|ABG79654.1| NADH-plastoquinone oxidoreductase subunit I [Angiopteris evecta] Length = 181 Score = 104 bits (258), Expect = 6e-21, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK S RFRG +CIAC++C +CP Sbjct: 22 IGQGFVVTLDHMNRLPMTIQYPYEKLIPSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + ++ Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 NLPVVDWELKESVRKKQLKNYSIDFAVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|295400699|ref|ZP_06810676.1| NADH-quinone oxidoreductase, chain I [Geobacillus thermoglucosidasius C56-YS93] gi|312112607|ref|YP_003990923.1| NADH-quinone oxidoreductase, chain I [Geobacillus sp. Y4.1MC1] gi|294977280|gb|EFG52881.1| NADH-quinone oxidoreductase, chain I [Geobacillus thermoglucosidasius C56-YS93] gi|311217708|gb|ADP76312.1| NADH-quinone oxidoreductase, chain I [Geobacillus sp. Y4.1MC1] Length = 139 Score = 104 bits (258), Expect = 6e-21, Method: Composition-based stats. Identities = 44/134 (32%), Positives = 55/134 (41%), Gaps = 7/134 (5%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + L+ + K T +YP E RFRG E+CI C C I Sbjct: 1 MIGLAKGLAYTLKNLAREKVTYDYPNEPLPLPDRFRGIQKFY-----PEKCIVCNQCANI 55 Query: 73 CPAQAI--TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 CP I T + P + Y I+ CI C LC E CP +AIV NFE A + Sbjct: 56 CPTDCIQLTGKKHPDPAKKGKIIDTYSINFEICILCDLCTEVCPTEAIVMTNNFELAEYS 115 Query: 131 RQELYYDKERLLNN 144 R +LY D L N Sbjct: 116 RDDLYKDLAWLDEN 129 >gi|33239635|ref|NP_874577.1| NADH dehydrogenase subunit I [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|81712853|sp|Q7VE31|NDHI_PROMA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName: Full=NAD(P)H dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I; Short=NDH-I gi|33237160|gb|AAP99229.1| NAD(P)H-quinone oxidoreductase subunit I [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 219 Score = 104 bits (258), Expect = 7e-21, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + + + T+ YP+EK S R+RG ++CIAC++C +CP Sbjct: 22 LLQGLAVTFDHMRRRPITVQYPYEKLIPSERYRGRI-----HYEFDKCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + Y ID CI+CG C E CP + + +E A R L Sbjct: 77 NLPVVDWVMNKETKKKELRNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAFDRHSLN 136 Query: 136 YD 137 +D Sbjct: 137 FD 138 >gi|228961558|ref|ZP_04123168.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798176|gb|EEM45179.1| NADH-quinone oxidoreductase, chain I [Bacillus thuringiensis serovar pakistani str. T13001] Length = 139 Score = 103 bits (257), Expect = 7e-21, Method: Composition-based stats. Identities = 43/141 (30%), Positives = 57/141 (40%), Gaps = 7/141 (4%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 +K L K K T +YP + RFRG E+CI C C I Sbjct: 1 MKGLFNGLKYTLSNLSKKKVTYDYPNQPLPLPDRFRGIQKFY-----PEKCIVCNQCSNI 55 Query: 73 CPAQAITIESGPRCHD--GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 CP I + + YDI+ CI C LC E CP +AIV NFE A + Sbjct: 56 CPTDCIQLTGKKHPDPTKKGKIIDTYDINFEICILCDLCTEVCPTEAIVMTNNFELAEYS 115 Query: 131 RQELYYDKERLLNNGDRWESE 151 R +L+ + + L N + E Sbjct: 116 RDDLFKNLQWLDENDENVRKE 136 >gi|22711918|ref|NP_683856.1| NADH dehydrogenase subunit I [Chaetosphaeridium globosum] gi|75302097|sp|Q8M9T7|NDHI_CHAGL RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|22416922|gb|AAM96522.1| subunit I of NADH-plastoquinone oxidoreductase [Chaetosphaeridium globosum] Length = 182 Score = 103 bits (257), Expect = 7e-21, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 55/122 (45%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK S RFRG +CIAC++C +CP Sbjct: 19 IGQGFTITLDHMNRLPVTIQYPYEKLIPSERFRGRIHFEFD-----KCIACEVCVRVCPI 73 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + ++ Y ID CI+CG C E CP + + +E + R EL Sbjct: 74 NLPVVDWEFQKSIKKKQLKSYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSVYDRHELN 133 Query: 136 YD 137 YD Sbjct: 134 YD 135 >gi|283824559|gb|ADB43092.1| predicted NADH dehydrogenase subunit I [uncultured marine phage] Length = 191 Score = 103 bits (257), Expect = 7e-21, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 54/122 (44%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + L + + T+ YP+EK S R+RG ++CIAC++C +CP Sbjct: 19 LIDGLSVTLSHMGRRPVTVQYPYEKLIPSERYRGRI-----HYEFDKCIACEVCVRVCPI 73 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + Y ID CI+CG C E CP + + +E + R +L Sbjct: 74 NLPVVDWVMNKQTKKKELRNYSIDFGACIFCGNCVEYCPTNCLSMTEEYELSVFDRHQLN 133 Query: 136 YD 137 YD Sbjct: 134 YD 135 >gi|318040629|ref|ZP_07972585.1| NADH dehydrogenase subunit I [Synechococcus sp. CB0101] Length = 200 Score = 103 bits (257), Expect = 7e-21, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + + T+ YP+EK S R+RG ++CIAC++C +CP Sbjct: 22 LTQGLSVTFDHLRRRPITVQYPYEKLIPSERYRGRI-----HYEFDKCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + Y ID CI+CG C E CP + + +E A R L Sbjct: 77 NLPVVDWVMNKATKKKELRNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAFDRHSLN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|116624761|ref|YP_826917.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Candidatus Solibacter usitatus Ellin6076] gi|122252713|sp|Q01UN8|NUOI2_SOLUE RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName: Full=NADH dehydrogenase I subunit I 2; AltName: Full=NDH-1 subunit I 2 gi|116227923|gb|ABJ86632.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Candidatus Solibacter usitatus Ellin6076] Length = 151 Score = 103 bits (257), Expect = 8e-21, Method: Composition-based stats. Identities = 46/138 (33%), Positives = 69/138 (50%), Gaps = 2/138 (1%) Query: 8 VSFLFLKEFVGAFFLCLRYF-FKAKTTINYPFEKGSTSPRFRGEHALRRYP-NGEERCIA 65 + +FL + F+ R K T YP E+ + R+RG L P NGE CI+ Sbjct: 5 LKKIFLVDLFQGLFVTFRNQNPKYIYTEQYPAERPKVAERYRGAPRLNINPDNGETLCIS 64 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 C LC CP I + S + V + D +C++CGLC++ACPVDA+ +FE Sbjct: 65 CNLCALACPENLIVVTSERSEVTKRKELVTFTYDTSRCMFCGLCEDACPVDALELTQDFE 124 Query: 126 FATETRQELYYDKERLLN 143 A+ TR+ +D++ L Sbjct: 125 MASYTREGQIWDRQALEE 142 >gi|86149440|ref|ZP_01067671.1| NADH-quinone oxidoreductase, I subunit [Campylobacter jejuni subsp. jejuni CF93-6] gi|121612213|ref|YP_001001211.1| NADH dehydrogenase subunit I [Campylobacter jejuni subsp. jejuni 81-176] gi|167006104|ref|ZP_02271862.1| NADH dehydrogenase subunit I [Campylobacter jejuni subsp. jejuni 81-176] gi|218563160|ref|YP_002344940.1| NADH dehydrogenase subunit I [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|116248560|sp|Q0P857|NUOI_CAMJE RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|156633516|sp|A1W1H0|NUOI_CAMJJ RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|85840222|gb|EAQ57480.1| NADH-quinone oxidoreductase, I subunit [Campylobacter jejuni subsp. jejuni CF93-6] gi|87249800|gb|EAQ72759.1| NADH-quinone oxidoreductase, I subunit [Campylobacter jejuni subsp. jejuni 81-176] gi|112360867|emb|CAL35668.1| NADH dehydrogenase I chain I [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315927683|gb|EFV07014.1| NADH-quinone oxidoreductase, chain I family protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 213 Score = 103 bits (257), Expect = 8e-21, Method: Composition-based stats. Identities = 55/153 (35%), Positives = 75/153 (49%), Gaps = 9/153 (5%) Query: 15 EFVGAFFLCLRYFFKA--KTTINYPFEKGSTSPRFRGEHALRRY-PNGEERCIACKLCEA 71 E F+ +R K TI YPFEK R+R H L R+ + ERCI C LCE Sbjct: 32 ELFVGLFVMMRELLKRNNSATIKYPFEKVKLDNRYRAVHRLMRFIESENERCIGCGLCEK 91 Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 IC + I +E+ +G ++ Y I++ +CIYCG C E CP AIV G +E A E R Sbjct: 92 ICISNCIRMETSLD-ENGRKKVENYSINLGRCIYCGFCAEVCPELAIVHGTEYENAAEQR 150 Query: 132 QELYYDKERLLNNGDRW----ESEIVRNIVTDS 160 Y K+ L D+ E E ++ D+ Sbjct: 151 SYFGY-KQDFLTPIDKLKNQVEFEGAGSLRKDA 182 >gi|298489805|ref|YP_003719982.1| NADH-plastoquinone oxidoreductase subunit I ['Nostoc azollae' 0708] gi|298231723|gb|ADI62859.1| NADH-plastoquinone oxidoreductase, I subunit ['Nostoc azollae' 0708] Length = 207 Score = 103 bits (256), Expect = 9e-21, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + + T+ YP+EK S RFRG +CI+C++C +CP Sbjct: 22 IGQGLSVTFDHMNRRPITVQYPYEKLIPSERFRGRIHFEFD-----KCISCEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ ++ Y ID CI+CG C E CP + I ++ T R EL Sbjct: 77 NLPVVDWEFDQETKKKKLNHYSIDFGVCIFCGNCVEFCPTNCISFTEEYDLCTYDRHELN 136 Query: 136 YD 137 D Sbjct: 137 LD 138 >gi|283953816|ref|ZP_06371347.1| NADH-quinone oxidoreductase, I subunit [Campylobacter jejuni subsp. jejuni 414] gi|283794857|gb|EFC33595.1| NADH-quinone oxidoreductase, I subunit [Campylobacter jejuni subsp. jejuni 414] Length = 213 Score = 103 bits (256), Expect = 9e-21, Method: Composition-based stats. Identities = 57/167 (34%), Positives = 80/167 (47%), Gaps = 13/167 (7%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKA--KTTINYPFEKGSTSPRFRGEHALRRY-P 57 ++ R +V E F+ +R K TI YPFEK R+R H L R+ Sbjct: 22 LQALRRSVKL----ELFVGLFVMMRELLKRNNSATIKYPFEKVKLDNRYRAVHRLMRFIE 77 Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + ERCI C LCE IC + I +E+ +G ++ Y I++ +CIYCG C E CP A Sbjct: 78 SENERCIGCGLCEKICISNCIRMETSLD-ENGRKKVSNYSINLGRCIYCGFCAEVCPELA 136 Query: 118 IVEGPNFEFATETRQELYYDKERLLNNGDRW----ESEIVRNIVTDS 160 IV G +E A E R Y K+ L D+ E E ++ D+ Sbjct: 137 IVHGTEYENAAEQRSYFGY-KQDFLTPIDKLKNQVEFEGAGSLRKDA 182 >gi|212640513|ref|YP_002317033.1| NADH dehydrogenase subunit I [Anoxybacillus flavithermus WK1] gi|212561993|gb|ACJ35048.1| NADH dehydrogenase subunit I [Anoxybacillus flavithermus WK1] Length = 139 Score = 103 bits (256), Expect = 9e-21, Method: Composition-based stats. Identities = 44/134 (32%), Positives = 55/134 (41%), Gaps = 7/134 (5%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + + L+ K K T +YP E RFRG E+CI C C I Sbjct: 1 MLGLMKGLAYTLKNLTKEKVTYDYPNEPLPLPDRFRGIQKFY-----PEKCIVCNQCANI 55 Query: 73 CPAQAITIESGPRCHD--GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 CP I + + YDI+ CI C LC E CP +AIV NFE A + Sbjct: 56 CPTDCIQLTGKKHPDPTKKGKIIDTYDINFEICILCDLCTEVCPTEAIVMTNNFELAEYS 115 Query: 131 RQELYYDKERLLNN 144 R EL+ D L N Sbjct: 116 RDELFKDLTWLDEN 129 >gi|296133532|ref|YP_003640779.1| NADH-quinone oxidoreductase, chain I [Thermincola sp. JR] gi|296032110|gb|ADG82878.1| NADH-quinone oxidoreductase, chain I [Thermincola potens JR] Length = 149 Score = 103 bits (256), Expect = 9e-21, Method: Composition-based stats. Identities = 39/127 (30%), Positives = 60/127 (47%), Gaps = 6/127 (4%) Query: 11 LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70 +F + + + L++FF+ K T YP E+ + RF+G L +CIAC LC Sbjct: 1 MFGQGLIKGLSITLKHFFEKKITQQYPEERPNLPDRFKGSFKL-----NVPKCIACGLCA 55 Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 CP I I S D ++ Y + + +C+YCG C E CP A+ FE Sbjct: 56 NACPNHVIEITSEK-GEDKKKKLTGYKMMVERCLYCGFCVETCPTKALQWTKEFENTKFF 114 Query: 131 RQELYYD 137 R+++ D Sbjct: 115 REDVNLD 121 >gi|159902717|ref|YP_001550061.1| NADH dehydrogenase subunit I [Prochlorococcus marinus str. MIT 9211] gi|226724532|sp|A9BD19|NDHI_PROM4 RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName: Full=NAD(P)H dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I; Short=NDH-I gi|159887893|gb|ABX08107.1| putative NADH Dehydrogenase subunit [Prochlorococcus marinus str. MIT 9211] Length = 215 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + + + T+ YP+EK S R+RG ++CIAC++C +CP Sbjct: 22 LLQGLAVTFDHMGRRPITVQYPYEKLIPSERYRGRI-----HYEFDKCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + Y ID CI+CG C E CP + + +E A R L Sbjct: 77 NLPVVDWVMNKETKKKELRNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAFDRHSLN 136 Query: 136 YD 137 +D Sbjct: 137 FD 138 >gi|163847543|ref|YP_001635587.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Chloroflexus aurantiacus J-10-fl] gi|222525393|ref|YP_002569864.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Chloroflexus sp. Y-400-fl] gi|163668832|gb|ABY35198.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chloroflexus aurantiacus J-10-fl] gi|222449272|gb|ACM53538.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chloroflexus sp. Y-400-fl] Length = 358 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 38/152 (25%), Positives = 55/152 (36%), Gaps = 15/152 (9%) Query: 14 KEFVGAFFLCLRYF---FK---------AKTTINYPFEKGSTSPRFRGEHALRRYPN-GE 60 + + +++ F+ TI YP E+ +R L G Sbjct: 29 SGLLRGMAVIWKHWKESFRLNRSYRQIHGTFTIQYPEERPRIPETYRNMPILLYDDETGH 88 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR--YDIDMIKCIYCGLCQEACPVDAI 118 E C +C CE ICP Q I + G + I+ C+ CG C E CP DAI Sbjct: 89 ELCTSCFQCERICPPQVIHMTQAKDPATGKPVPAVAEFIIEYDACMSCGFCAEVCPFDAI 148 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWES 150 FE +T+ L K +L +E Sbjct: 149 KMDHEFELSTDDHSSLTVHKAQLNRPISYYEK 180 >gi|157736568|ref|YP_001489251.1| NADH-quinone oxidoreductase, I subunit [Arcobacter butzleri RM4018] gi|315635731|ref|ZP_07890994.1| NADH-quinone oxidoreductase subunit I [Arcobacter butzleri JV22] gi|157698422|gb|ABV66582.1| NADH-quinone oxidoreductase, I subunit [Arcobacter butzleri RM4018] gi|315480028|gb|EFU70698.1| NADH-quinone oxidoreductase subunit I [Arcobacter butzleri JV22] Length = 166 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 47/149 (31%), Positives = 74/149 (49%), Gaps = 9/149 (6%) Query: 5 RCNVSFLFLKEFVGAFFLCLRYFFKAKT------TINYPF-EKGSTSPRFRGEHALRRYP 57 + L+L G ++F K T+ YP + + R+RG H L ++ Sbjct: 11 KSFKDRLYLPGIAGGMKTTFKHFVKNLKDVESINTLQYPEVQPTDITDRYRGVHRLTKFD 70 Query: 58 NGEERCIACKLCEAICPAQAITIESGPRC-HDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 +G E+C+AC +C CPA+ I IE+ R +R + ID+++C++CG C EACP D Sbjct: 71 DGSEKCVACFMCATACPAECIFIEAEERFDEHNEKRPKEFKIDLLECVFCGYCVEACPCD 130 Query: 117 AIVE-GPNFEFATETRQELYYDKERLLNN 144 AI F F R++ DK+ L+ N Sbjct: 131 AIRMDTGIFSFTASKREDFVLDKKALMAN 159 >gi|148925719|ref|ZP_01809407.1| NADH dehydrogenase I chain I [Campylobacter jejuni subsp. jejuni CG8486] gi|205355586|ref|ZP_03222356.1| NADH dehydrogenase I chain I [Campylobacter jejuni subsp. jejuni CG8421] gi|145845729|gb|EDK22820.1| NADH dehydrogenase I chain I [Campylobacter jejuni subsp. jejuni CG8486] gi|205346363|gb|EDZ32996.1| NADH dehydrogenase I chain I [Campylobacter jejuni subsp. jejuni CG8421] Length = 213 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 57/166 (34%), Positives = 79/166 (47%), Gaps = 13/166 (7%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKA--KTTINYPFEKGSTSPRFRGEHALRRY-PN 58 + R +V E F+ +R K TI YPFEK R+R H L R+ + Sbjct: 23 QALRRSVKL----ELFVGLFVMMRELLKRNNSATIKYPFEKVKLDNRYRAVHRLMRFIES 78 Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ERCI C LCE IC + I +E+ +G ++ Y I++ +CIYCG C E CP AI Sbjct: 79 ENERCIGCGLCEKICISNCIRMETSLD-ENGRKKVGNYSINLGRCIYCGFCAEVCPELAI 137 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRW----ESEIVRNIVTDS 160 V G +E A E R Y K+ L D+ E E ++ D+ Sbjct: 138 VHGIEYENAAEQRSYFGY-KQDFLTPIDKLKNQVEFEGAGSLRKDA 182 >gi|307327969|ref|ZP_07607150.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Streptomyces violaceusniger Tu 4113] gi|306886274|gb|EFN17279.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Streptomyces violaceusniger Tu 4113] Length = 233 Score = 103 bits (256), Expect = 1e-20, Method: Composition-based stats. Identities = 41/139 (29%), Positives = 57/139 (41%), Gaps = 14/139 (10%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + LR + T YP + PR RG L EE C C LC C Sbjct: 6 SGLAKGLAVTLRTMTRKSHTAQYPDAQPELPPRTRGVIGLF-----EENCTVCMLCAREC 60 Query: 74 PAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 P I I+S R+ ID C+YCG+C E CP DA+ P F Sbjct: 61 PDWCIYIDSHKETVPPAAPGGRERSRNVLDRFAIDFALCMYCGICIEVCPFDALFWSPEF 120 Query: 125 EFATETRQELYYDKERLLN 143 E+A E ++L +++++L Sbjct: 121 EYAEEDIRDLTHERDKLRE 139 >gi|290489750|gb|ADD31282.1| NADH-plastoquinone oxidoreductase subunit I protein [Antirrhinum majus] Length = 171 Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETSIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|94968319|ref|YP_590367.1| 4Fe-4S ferredoxin, iron-sulfur binding [Candidatus Koribacter versatilis Ellin345] gi|123381597|sp|Q1IS57|NUOI1_ACIBL RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName: Full=NADH dehydrogenase I subunit I 1; AltName: Full=NDH-1 subunit I 1 gi|94550369|gb|ABF40293.1| NADH dehydrogenase subunit I [Candidatus Koribacter versatilis Ellin345] Length = 152 Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 1/135 (0%) Query: 8 VSFLFLKEFVGAFFLCLRY-FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIAC 66 + +FL + + + +Y K T YP E+ + RFRG+ ++ NGE CI C Sbjct: 7 LRKVFLIDLIKGLSITFKYQAPKDCQTEQYPQERPVITDRFRGQPMMKLGENGETLCIGC 66 Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 LC CP I ++S + V Y D+ +C++CGLC+EACP ++ G +E Sbjct: 67 NLCALACPENLIAMKSDRDPVTKKKVMVTYVYDVSRCMFCGLCEEACPTQSLKLGTGYEM 126 Query: 127 ATETRQELYYDKERL 141 A +R+ + D++ L Sbjct: 127 ALYSREGMVLDRKVL 141 >gi|11466756|ref|NP_039352.1| NADH dehydrogenase subunit I [Marchantia polymorpha] gi|120536|sp|P06253|NDHI_MARPO RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|11727|emb|CAA28138.1| frxB [Marchantia polymorpha] Length = 183 Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TTI YP+EK S RFRG +CIAC++C +CP Sbjct: 22 IGQGFLVTLDHMNRLPTTIQYPYEKLIPSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + ++ Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 NLPVVDWELKKTIKKKQLKNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYNRHELN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|317968123|ref|ZP_07969513.1| NADH dehydrogenase subunit I [Synechococcus sp. CB0205] Length = 198 Score = 102 bits (255), Expect = 1e-20, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + + T+ YP+EK S R+RG ++CIAC++C +CP Sbjct: 22 LAQGLSVTFDHLQRRPITVQYPYEKLIPSERYRGRI-----HYEFDKCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + Y ID CI+CG C E CP + + +E A R L Sbjct: 77 NLPVVDWVMNKATKKKELRNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELAAFDRHSLN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|206942068|gb|ACI22631.1| NADH-plastoquinone oxidoreductase subunit I [Aneura pinguis] Length = 177 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 40/122 (32%), Positives = 56/122 (45%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK S RFRG +CIAC++C +CP Sbjct: 18 IGQGFLVTLDHMNRFPITIQYPYEKLIPSERFRGRIHFEFD-----KCIACEVCVRVCPM 72 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ R +R Y ID CI+CG C E CP + + +E +T R EL Sbjct: 73 NLPVVDWELRRTMRRKRLRSYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTHDRHELN 132 Query: 136 YD 137 YD Sbjct: 133 YD 134 >gi|153951035|ref|YP_001398853.1| NADH dehydrogenase subunit I [Campylobacter jejuni subsp. doylei 269.97] gi|166918791|sp|A7H5S3|NUOI_CAMJD RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|152938481|gb|ABS43222.1| NADH-quinone oxidoreductase, I subunit [Campylobacter jejuni subsp. doylei 269.97] Length = 213 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 55/153 (35%), Positives = 75/153 (49%), Gaps = 9/153 (5%) Query: 15 EFVGAFFLCLRYFFKA--KTTINYPFEKGSTSPRFRGEHALRRY-PNGEERCIACKLCEA 71 E F+ +R K TI YPFEK R+R H L R+ + ERCI C LCE Sbjct: 32 ELFVGLFVMMRELLKRNNSATIKYPFEKVKLDNRYRAVHRLMRFIESENERCIGCGLCEK 91 Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 IC + I +E+ +G ++ Y I++ +CIYCG C E CP AIV G +E A E R Sbjct: 92 ICISNCIRMETSLD-ENGRKKVGNYSINLGRCIYCGFCAEVCPELAIVHGIEYENAAEQR 150 Query: 132 QELYYDKERLLNNGDRW----ESEIVRNIVTDS 160 Y K+ L D+ E E ++ D+ Sbjct: 151 SYFGY-KQDFLTPIDKLKNQVEFEGAGSLRKDA 182 >gi|329938295|ref|ZP_08287746.1| NADH dehydrogenase subunit NuoI2 [Streptomyces griseoaurantiacus M045] gi|329302784|gb|EGG46674.1| NADH dehydrogenase subunit NuoI2 [Streptomyces griseoaurantiacus M045] Length = 233 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 44/165 (26%), Positives = 61/165 (36%), Gaps = 26/165 (15%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + LR + T YP + PR RG L EE C C LC C Sbjct: 15 SGLAKGLAVTLRTMTRKTVTAQYPDTQPHLPPRSRGVIGLF-----EENCTVCMLCAREC 69 Query: 74 PAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 P I I+S R+ ID C+YCG+C E CP DA+ P F Sbjct: 70 PDWCIYIDSHKETVPAANPGGRERSRNVLDRFAIDFSLCMYCGICIEVCPFDALFWSPEF 129 Query: 125 EFATETRQELYYDKERL------------LNNGDRWESEIVRNIV 157 E+A ++L +++++L L+ G EI Sbjct: 130 EYAETDIRDLTHERDKLREWMWTVPAPPALDPGAEEPKEIAAARK 174 >gi|108796694|ref|YP_636525.1| NADH dehydrogenase subunit I [Zygnema circumcarinatum] gi|110287714|sp|Q32RK1|NDHI_ZYGCR RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|61393678|gb|AAX45820.1| 18 kDa subunit of NADH-plastoquinone oxidoreductase [Zygnema circumcarinatum] Length = 181 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + +TI YP+EK S RFRG +CIAC++C +CP Sbjct: 19 IGQGFMVTLDHMNRTASTIQYPYEKLIPSERFRGRIHFEFD-----KCIACEVCVRVCPI 73 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + ++ Y ID CI+CG C E CP + + +E + R EL Sbjct: 74 NLPVVDWEFQKSMKKKQLKSYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSAYDRHELN 133 Query: 136 YD 137 YD Sbjct: 134 YD 135 >gi|172072940|ref|YP_001806701.1| NADH dehydrogenase subunit I [Cryptomeria japonica] gi|171854959|dbj|BAG16699.1| NADH-plastoquinone oxidoreductase subunit I [Cryptomeria japonica] gi|239794327|dbj|BAH73324.1| NADH-plastoquinone oxidoreductase subunit I [Cryptomeria japonica] gi|239794410|dbj|BAH73406.1| NADH-plastoquinone oxidoreductase subunit I [Cryptomeria japonica] Length = 160 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 40/122 (32%), Positives = 56/122 (45%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK S RFRG +CIAC++C +CP Sbjct: 22 IGQGFMVTLYHMNRLPITIQYPYEKLIPSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ G +R Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 NLPVVDWKVGIDIGKKRLENYSIDFGICIFCGNCVEYCPTNCLAMTEEYELSTYDRHELN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|156742067|ref|YP_001432196.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Roseiflexus castenholzii DSM 13941] gi|156233395|gb|ABU58178.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Roseiflexus castenholzii DSM 13941] Length = 449 Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats. Identities = 39/151 (25%), Positives = 57/151 (37%), Gaps = 16/151 (10%) Query: 16 FVGAFFLCLRYF-------FKAK------TTINYPFEKGSTSPRFRGEHALRRYPN-GEE 61 + + R+F + T+ YP E+ FR L G+E Sbjct: 35 LLTGLDVVFRHFRDALTRKLEKPSQQTGVFTVQYPEERLKLPEAFRNFPILLYDDETGQE 94 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVR--YDIDMIKCIYCGLCQEACPVDAIV 119 C +C C+ ICP Q I + G + I+ C+ CGLC E CP DAI Sbjct: 95 LCTSCFQCQRICPPQVIHMTQARDPSTGKPVPAVAEFLIEYDACMSCGLCAEVCPFDAIK 154 Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWES 150 FE++T+ L +K L +E Sbjct: 155 MDHEFEYSTDVHGGLTINKAALNRPISYYEK 185 >gi|239828578|ref|YP_002951202.1| NADH dehydrogenase subunit I [Geobacillus sp. WCH70] gi|239808871|gb|ACS25936.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacillus sp. WCH70] Length = 139 Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats. Identities = 42/134 (31%), Positives = 52/134 (38%), Gaps = 7/134 (5%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + L+ + K T +YP E RFRG E+CI C C I Sbjct: 1 MIGLAKGLAYTLKNLTREKVTYDYPNEPLPLPDRFRGIQKFY-----PEKCIVCNQCANI 55 Query: 73 CPAQAITIESGPRCHD--GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 CP I + + Y I+ CI C LC E CP +AIV NFE A + Sbjct: 56 CPTDCIQLTGKKHPDPTKKGKIIDTYSINFEICILCDLCTEVCPTEAIVMTNNFELAEYS 115 Query: 131 RQELYYDKERLLNN 144 R LY D L N Sbjct: 116 RDALYKDLAWLDEN 129 >gi|313183963|ref|YP_004021817.1| NADH-plastoquinone oxidoreductase subunit I [Equisetum arvense] gi|281371683|gb|ADA63616.1| NADH-plastoquinone oxidoreductase subunit I [Equisetum arvense] Length = 182 Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + + ++ TI YP+EK S RFRG +CIAC++C +CP Sbjct: 22 IGQGFSVTTDHMNRSPMTIQYPYEKLIPSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + ++ Y ID CI+CG C E CP + + +E +T R +L Sbjct: 77 NLPVVDWELKKDLRKKQLKNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHDLN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|60117229|ref|YP_209563.1| NADH dehydrogenase subunit I [Huperzia lucidula] gi|75286705|sp|Q5SCZ1|NDHI_HUPLU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|50660037|gb|AAT80759.1| NADH-plastoquinone oxidoreductase subunit 8 [Huperzia lucidula] Length = 183 Score = 102 bits (253), Expect = 2e-20, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + T+ YP+EK S RFRG +CIAC++C +CP Sbjct: 22 IGQGFMVTLDHMNRLPMTVQYPYEKLIPSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + ++ Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 NLPVVDWEFEKNIRKKQLTSYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 +D Sbjct: 137 HD 138 >gi|284034103|ref|YP_003384034.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Kribbella flavida DSM 17836] gi|283813396|gb|ADB35235.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Kribbella flavida DSM 17836] Length = 214 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 43/137 (31%), Positives = 60/137 (43%), Gaps = 14/137 (10%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 K + + + + T YP + PR RG AL EE C +C LC C Sbjct: 6 KGLIDGLKVTAKTLSRRAVTEQYPDVQPELPPRSRGVIALM-----EENCTSCMLCAREC 60 Query: 74 PAQAITIES---------GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 P+ I I+S R+ ID C+YCG+C EACP DA+ P F Sbjct: 61 PSWCIYIDSHTETAPSVGEQARERSRNVLDRFAIDFSLCMYCGICIEACPFDALFWSPEF 120 Query: 125 EFATETRQELYYDKERL 141 E+A + L ++K+RL Sbjct: 121 EYAETDLRNLTHEKDRL 137 >gi|138896928|ref|YP_001127381.1| NADH dehydrogenase subunit I [Geobacillus thermodenitrificans NG80-2] gi|196249745|ref|ZP_03148441.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacillus sp. G11MC16] gi|134268441|gb|ABO68636.1| NADH-quinone oxidoreductase chain I [Geobacillus thermodenitrificans NG80-2] gi|196210621|gb|EDY05384.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacillus sp. G11MC16] Length = 139 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 44/134 (32%), Positives = 54/134 (40%), Gaps = 7/134 (5%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + V L+ + K T YP E RFRG E+CI C C I Sbjct: 1 MIGLVKGLAYTLKELTREKVTYKYPHEPLPLPDRFRGIQKFY-----PEKCIVCNQCMNI 55 Query: 73 CPAQAITIESGPRCHD--GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 CP Q I + + Y+I+ CI C LC E CP +AIV NFE A + Sbjct: 56 CPTQCIQLTGKKHPDPTKKGKVIETYNINFEICILCDLCTEVCPTEAIVMTNNFELAEYS 115 Query: 131 RQELYYDKERLLNN 144 R LY D L N Sbjct: 116 RDALYKDLTWLDEN 129 >gi|124112065|ref|YP_001019163.1| 18 kDa subunit of NADH-plastoquinone oxidoreductase [Chlorokybus atmophyticus] gi|156632609|sp|Q19V57|NDHI_CHLAT RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|124012181|gb|ABD62197.2| 18 kDa subunit of NADH-plastoquinone oxidoreductase [Chlorokybus atmophyticus] Length = 175 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + + + TI YP+EK S RFRG +CIAC++C +CP Sbjct: 22 IGQGFMVTFDHMSRRPVTIQYPYEKLIPSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 + + ++ Y ID CI+CG C E CP + + +E + R EL Sbjct: 77 NLPVVNWEFQKEKKKKQLQTYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSVYDRHELN 136 Query: 136 YD 137 +D Sbjct: 137 FD 138 >gi|139387309|ref|YP_001123429.1| NADH dehydrogenase subunit I [Capsella bursa-pastoris] gi|156632608|sp|A4QKP9|NDHI_CAPBU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|134286630|dbj|BAF50254.1| NADH dehydrogenase subunit [Capsella bursa-pastoris] Length = 172 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHTNRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + +R + Y ID CI+CG C E CP + + +EF+T R EL Sbjct: 77 DLPVVDWKLETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYEFSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|296274495|ref|YP_003657126.1| NADH-quinone oxidoreductase subunit I [Arcobacter nitrofigilis DSM 7299] gi|296098669|gb|ADG94619.1| NADH-quinone oxidoreductase, chain I [Arcobacter nitrofigilis DSM 7299] Length = 207 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 49/172 (28%), Positives = 73/172 (42%), Gaps = 18/172 (10%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYF-----FKAKTTINYPFEKGSTSPRFRGEHALRRY 56 ++F+ ++ E + K T+ YP EK PR+R H L Sbjct: 34 QVFKRSIK----GELFTGLKITFIMMKEALFNKQMHTVQYPAEKLPIGPRYRAVHKLLAL 89 Query: 57 -PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 +GE RCI C LCE IC + I +++ + + + Y I+ +CI+CG C E CP Sbjct: 90 LESGENRCIGCGLCEKICISDCIRMDTRID-ENSRKEVLEYTINFGRCIFCGYCAEVCPE 148 Query: 116 DAIVEGPNFEFATETRQELYYDKERLLNNGDR------WESEIVRNIVTDSP 161 AIV G +E A E R K+ LL D+ +E + D Sbjct: 149 LAIVHGGRYENAGEQRAHFVV-KDDLLTPLDKLAQQQEYEGFGAVSPDADEK 199 >gi|123965423|ref|YP_001010504.1| NADH dehydrogenase subunit I [Prochlorococcus marinus str. MIT 9515] gi|156632625|sp|A2BUD6|NDHI_PROM5 RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName: Full=NAD(P)H dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I; Short=NDH-I gi|123199789|gb|ABM71397.1| putative NADH Dehydrogenase subunit [Prochlorococcus marinus str. MIT 9515] Length = 208 Score = 101 bits (251), Expect = 3e-20, Method: Composition-based stats. Identities = 39/144 (27%), Positives = 62/144 (43%), Gaps = 13/144 (9%) Query: 1 MRIFRCNVSFLFLKEFVG-------AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL 53 M+ F V+ ++KE G + + + T+ YP+EK S R+RG Sbjct: 1 MKDFLQKVNS-YIKEAFGAGKYLYDGLSVTFDHLRRRPVTVQYPYEKLIPSERYRGRI-- 57 Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 ++CIAC++C +CP ++ + Y ID CI+CG C E C Sbjct: 58 ---HYEFDKCIACEVCVRVCPINLPVVDWVMNKETKKKELRNYSIDFGVCIFCGNCVEYC 114 Query: 114 PVDAIVEGPNFEFATETRQELYYD 137 P + + +E AT R L +D Sbjct: 115 PTNCLSMTEEYELATFDRHNLNFD 138 >gi|330850797|ref|YP_004376475.1| NADH dehydrogenase subunit I [Olea europaea subsp. europaea] gi|291059308|gb|ADD72144.1| NADH-plastoquinone oxidoreductase subunit I [Olea europaea] gi|328795487|emb|CBR30369.1| NADH dehydrogenase subunit I [Olea europaea subsp. europaea] Length = 170 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHVNRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYNRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|326200333|gb|ADZ52372.1| NADH dehydrogenase 18 kDa subunit [Asclepias syriaca] Length = 173 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFAITLSHANRLPITIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R Y ID CI+CG C E CP + + +E ++ R EL Sbjct: 77 DLPVVDWKLESDIRKKRLFNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSSYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|123967714|ref|YP_001008572.1| NADH dehydrogenase subunit I [Prochlorococcus marinus str. AS9601] gi|156632626|sp|A2BNV4|NDHI_PROMS RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName: Full=NAD(P)H dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I; Short=NDH-I gi|123197824|gb|ABM69465.1| putative NADH Dehydrogenase subunit [Prochlorococcus marinus str. AS9601] Length = 208 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 37/144 (25%), Positives = 61/144 (42%), Gaps = 13/144 (9%) Query: 1 MRIFRCNVSFLFLKE-------FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL 53 M+ F ++ ++KE + + + T+ YP+EK S R+RG Sbjct: 1 MKNFLQQINS-YIKEAFNAGKYLYNGLSVTFDHLRRRPVTVQYPYEKLIPSERYRGRI-- 57 Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 ++CIAC++C +CP ++ + Y ID CI+CG C E C Sbjct: 58 ---HYEFDKCIACEVCVRVCPINLPVVDWVMNKETKKKELRNYSIDFGVCIFCGNCVEYC 114 Query: 114 PVDAIVEGPNFEFATETRQELYYD 137 P + + +E AT R L +D Sbjct: 115 PTNCLSMTEEYELATFDRHNLNFD 138 >gi|116617162|ref|YP_817536.1| NADH-plastoquinone oxidoreductase subunit I [Coffea arabica] gi|122153673|sp|A0A389|NDHI_COFAR RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|116242218|gb|ABJ89733.1| NADH-plastoquinone oxidoreductase subunit I [Coffea arabica] Length = 167 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK T RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPITIQYPYEKLITPERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ ++ + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKQLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|34501455|ref|NP_904242.1| NADH dehydrogenase subunit I [Physcomitrella patens subsp. patens] gi|75294068|sp|Q6YXP9|NDHI_PHYPA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|34494825|dbj|BAC85092.1| NADH dehydrogenase 18 kD subunit [Physcomitrella patens subsp. patens] Length = 181 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK S RFRG +CIAC++C +CP Sbjct: 22 IGQGFMVTLDHMNRLPMTIQYPYEKLIPSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + ++ Y ID CI+CG C E CP + + +E + R +L Sbjct: 77 NLPVVDWELKKDVKKKQLKSYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSIYDRHDLN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|139390403|ref|YP_001123000.1| NADH dehydrogenase subunit [Aethionema cordifolium] gi|156632602|sp|A4QJH0|NDHI_AETCO RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|134286196|dbj|BAF49825.1| NADH dehydrogenase subunit [Aethionema cordifolium] Length = 167 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 40/122 (32%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHTNRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +EF+T R EL Sbjct: 77 DLPVVDWKLETPIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYEFSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|115391957|ref|YP_778545.1| NADH dehydrogenase subunit I [Jasminum nudiflorum] gi|122164925|sp|Q06R76|NDHI_JASNU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|110456278|gb|ABG74683.1| NADH dehydrogenase 18 kDa subunit [Jasminum nudiflorum] Length = 167 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYNRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|139389858|ref|YP_001123518.1| NADH dehydrogenase subunit I [Crucihimalaya wallichii] gi|156632611|sp|A4QKY8|NDHI_CRUWA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|134286720|dbj|BAF50343.1| NADH dehydrogenase subunit [Crucihimalaya wallichii] Length = 172 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHTNRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + +R + Y ID CI+CG C E CP + + +EF+T R EL Sbjct: 77 DLPVVDWKLETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYEFSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|78778547|ref|YP_396659.1| NADH dehydrogenase subunit I [Prochlorococcus marinus str. MIT 9312] gi|110287703|sp|Q31D22|NDHI_PROM9 RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName: Full=NAD(P)H dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I; Short=NDH-I gi|78712046|gb|ABB49223.1| NADH-plastoquinone oxidoreductase, I subunit [Prochlorococcus marinus str. MIT 9312] Length = 208 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 37/144 (25%), Positives = 61/144 (42%), Gaps = 13/144 (9%) Query: 1 MRIFRCNVSFLFLKE-------FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL 53 M+ F ++ ++KE + + + T+ YP+EK S R+RG Sbjct: 1 MKNFLQQINS-YIKEAFNAGKYLYNGLSVTFDHLRRRPVTVQYPYEKLIPSERYRGRI-- 57 Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 ++CIAC++C +CP ++ + Y ID CI+CG C E C Sbjct: 58 ---HYEFDKCIACEVCVRVCPINLPVVDWVMNKETKKKELRNYSIDFGVCIFCGNCVEYC 114 Query: 114 PVDAIVEGPNFEFATETRQELYYD 137 P + + +E AT R L +D Sbjct: 115 PTNCLSMTEEYELATFDRHNLNFD 138 >gi|226315025|ref|YP_002774921.1| NADH dehydrogenase subunit I [Brevibacillus brevis NBRC 100599] gi|226097975|dbj|BAH46417.1| NADH-quinone oxidoreductase chain I [Brevibacillus brevis NBRC 100599] Length = 137 Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats. Identities = 44/134 (32%), Positives = 57/134 (42%), Gaps = 7/134 (5%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + + + K T YP PRFRG E+CI C C I Sbjct: 1 MLGLAKGLGYTFKKLTEKKVTHFYPDVPFPMPPRFRGIQHF-----SPEKCIVCNQCARI 55 Query: 73 CPAQAI--TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 CP + I T + P + YDI+ CI C LC E CP +AIV NFE A + Sbjct: 56 CPTECIQLTGKPHPDPEKKGKIIDTYDINFELCILCDLCTEVCPTEAIVMTNNFELAAYS 115 Query: 131 RQELYYDKERLLNN 144 R ELY + + L +N Sbjct: 116 RDELYKNLKWLDDN 129 >gi|268678788|ref|YP_003303219.1| NADH-quinone oxidoreductase, chain I [Sulfurospirillum deleyianum DSM 6946] gi|268616819|gb|ACZ11184.1| NADH-quinone oxidoreductase, chain I [Sulfurospirillum deleyianum DSM 6946] Length = 204 Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats. Identities = 52/154 (33%), Positives = 75/154 (48%), Gaps = 4/154 (2%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKT-TINYPFEKGSTSPRFRGEHAL-RRYPNGEE 61 F+ V E ++ LR + T+ YP EK PR+R H L R + +G E Sbjct: 31 FQRVVKRTLKGELFVGLWVVLREMIRFDIHTLKYPSEKMEMGPRYRAIHRLLRLFESGSE 90 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCI C LCE IC A+ I +E+ + +Y I+ +CI+CG C E CP AIV G Sbjct: 91 RCIGCGLCEKICIAKCIRMETRID-EKSRKEVSQYSINFGRCIFCGYCAEVCPELAIVHG 149 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRN 155 +E A+E R KE +L D + ++ + Sbjct: 150 AEYENASEQRAHFGL-KEDMLTPLDTFRAKEQKE 182 >gi|22298210|ref|NP_681457.1| NADH dehydrogenase subunit I [Thermosynechococcus elongatus BP-1] gi|81743592|sp|Q8DL31|NDHI_THEEB RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName: Full=NAD(P)H dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I; Short=NDH-I gi|22294389|dbj|BAC08219.1| NADH dehydrogenase subunit [Thermosynechococcus elongatus BP-1] Length = 196 Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + + T+ YP+EK S RFRG +CIAC++C +CP Sbjct: 21 IGQGLSVTFDHMRRRPITVQYPYEKLIPSERFRGRIHFEFD-----KCIACEVCVRVCPI 75 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + Y ID CI+C C E CP + + +E AT R EL Sbjct: 76 NLPVVDWVFNKELKKKELKHYSIDFGVCIFCANCVEYCPTNCLSVTEEYELATYDRHELN 135 Query: 136 YD 137 YD Sbjct: 136 YD 137 >gi|139389473|ref|YP_001123169.1| NADH dehydrogenase subunit I [Olimarabidopsis pumila] gi|156632619|sp|A4QJY6|NDHI_OLIPU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|134286367|dbj|BAF49994.1| NADH dehydrogenase subunit [Olimarabidopsis pumila] Length = 172 Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats. Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHTNRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + +R + Y ID CI+CG C E CP + + +EF+T R EL Sbjct: 77 DLPVVDWKLETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYEFSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|7525089|ref|NP_051113.1| NADH dehydrogenase subunit I [Arabidopsis thaliana] gi|297790826|ref|XP_002863298.1| NADH dehydrogenase subunit I [Arabidopsis lyrata subsp. lyrata] gi|6685681|sp|P56755|NDHI_ARATH RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|5881750|dbj|BAA84441.1| NADH dehydrogenase subunit [Arabidopsis thaliana] gi|297309132|gb|EFH39557.1| NADH dehydrogenase subunit I [Arabidopsis lyrata subsp. lyrata] Length = 172 Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats. Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHTNRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + +R + Y ID CI+CG C E CP + + +EF+T R EL Sbjct: 77 DLPVVDWKLETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYEFSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|18860373|ref|NP_569689.1| NADH dehydrogenase subunit I [Psilotum nudum] gi|75305090|sp|Q8WHX5|NDHI_PSINU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|18389526|dbj|BAB84278.1| NADH dehydrogenase 18kD subunit [Psilotum nudum] Length = 165 Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + T+ YP+EK S RFRG +CIAC++C +CP Sbjct: 22 IGQSFMVTLEHMNRLPITVQYPYEKIIPSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ ++ Y ID CI+CG C E CP + + +E AT R EL Sbjct: 77 NLPVVDWELIKSMRKKQLKSYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELATYDRHELN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|139389152|ref|YP_001123869.1| NADH dehydrogenase subunit I [Nasturtium officinale] gi|156632617|sp|A4QLY9|NDHI_NASOF RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|134287075|dbj|BAF50694.1| NADH dehydrogenase subunit [Nasturtium officinale] Length = 167 Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats. Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHTNRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + +R + Y ID CI+CG C E CP + + +EF+T R EL Sbjct: 77 DLPVVDWKLETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYEFSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|126695517|ref|YP_001090403.1| NADH dehydrogenase subunit I [Prochlorococcus marinus str. MIT 9301] gi|156632622|sp|A3PAM7|NDHI_PROM0 RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName: Full=NAD(P)H dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I; Short=NDH-I gi|126542560|gb|ABO16802.1| putative NADH Dehydrogenase subunit [Prochlorococcus marinus str. MIT 9301] Length = 208 Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats. Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 13/144 (9%) Query: 1 MRIFRCNVSFLFLKE-------FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL 53 M+ F ++ ++KE F + + + T+ YP+EK S R+RG Sbjct: 1 MKNFLQQINS-YIKEAFNAGKYLYNGFSVTFDHLRRRPVTVQYPYEKLIPSERYRGRI-- 57 Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 ++CIAC++C +CP ++ + Y ID CI+CG C E C Sbjct: 58 ---HYEFDKCIACEVCVRVCPINLPVVDWVMNKETKKKELRNYSIDFGVCIFCGNCVEYC 114 Query: 114 PVDAIVEGPNFEFATETRQELYYD 137 P + + +E AT R L +D Sbjct: 115 PTNCLSMTEEYELATFDRHNLNFD 138 >gi|295798108|emb|CAX68929.1| NADH dehydrogenase I, I subunit (23 kDa) [uncultured bacterium] Length = 178 Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats. Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 19/150 (12%) Query: 12 FLKEFVGAFFLCLRYFFKAK-----------------TTINYPFEKGSTSPRFRGEHALR 54 ++ E + L ++FF+ T+ +P E + R R H L Sbjct: 19 YISEVIRGVSLTSKHFFRNFFLHLLHAFGLFKNIPAGVTVQFPEETPFLADRTRTRHRLT 78 Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT-RRTVRYDIDMIKCIYCGLCQEAC 113 + +G RC+AC +CE +CPA+ I I + +R +DID+ KC+YCG C E C Sbjct: 79 KREDGSPRCVACMMCETVCPARCIYIVAEEHPDPNIEKRPKSFDIDLGKCVYCGFCVEVC 138 Query: 114 PVDAIVE-GPNFEFATETRQELYYDKERLL 142 P DAI +++TR++L D +LL Sbjct: 139 PEDAIRMDTKIVAISSDTREDLMLDITKLL 168 >gi|89280690|ref|YP_514907.1| NADH dehydrogenase subunit I [Solanum lycopersicum] gi|91209043|ref|YP_538904.1| NADH dehydrogenase subunit I [Solanum bulbocastanum] gi|108773183|ref|YP_635693.1| NADH dehydrogenase subunit I [Solanum tuberosum] gi|110287700|sp|Q2MI46|NDHI_SOLLC RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|110287705|sp|Q2MID3|NDHI_SOLBU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|110287706|sp|Q2VEC7|NDHI_SOLTU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|82754677|gb|ABB90091.1| NADH dehydrogenase subunit I [Solanum tuberosum] gi|84371950|gb|ABC56268.1| NADH-plastoquinone oxidoreductase subunit I [Solanum bulbocastanum] gi|84372038|gb|ABC56355.1| NADH-plastoquinone oxidoreductase subunit I [Solanum lycopersicum] gi|88656858|gb|ABD47111.1| NADH-plastoquinone oxidoreductase subunit I [Solanum tuberosum] gi|89241726|emb|CAJ32449.1| NADH dehydrogenase subunit I [Solanum lycopersicum] Length = 167 Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|157412516|ref|YP_001483382.1| NADH dehydrogenase subunit I [Prochlorococcus marinus str. MIT 9215] gi|254526469|ref|ZP_05138521.1| NADH-plastoquinone oxidoreductase, I subunit [Prochlorococcus marinus str. MIT 9202] gi|167016274|sp|A8G2G5|NDHI_PROM2 RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName: Full=NAD(P)H dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I; Short=NDH-I gi|157387091|gb|ABV49796.1| putative NADH Dehydrogenase subunit [Prochlorococcus marinus str. MIT 9215] gi|221537893|gb|EEE40346.1| NADH-plastoquinone oxidoreductase, I subunit [Prochlorococcus marinus str. MIT 9202] Length = 208 Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 5/119 (4%) Query: 19 AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78 + + + T+ YP+EK S R+RG ++CIAC++C +CP Sbjct: 25 GLSVTFDHLRRRPVTVQYPYEKLIPSERYRGRI-----HYEFDKCIACEVCVRVCPINLP 79 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 ++ + Y ID CI+CG C E CP + + +E AT R L +D Sbjct: 80 VVDWVMNKETKKKELRNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELATFDRHNLNFD 138 >gi|139389319|ref|YP_001123084.1| NADH dehydrogenase subunit [Aethionema grandiflorum] gi|156632603|sp|A4QJQ4|NDHI_AETGR RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|134286281|dbj|BAF49909.1| NADH dehydrogenase subunit [Aethionema grandiflorum] Length = 167 Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats. Identities = 40/122 (32%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK S RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHTNRLPVTIQYPYEKLIISERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ H +R + Y ID CI+CG C E CP + + +EF+T R EL Sbjct: 77 DLPVVDWKLETHIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYEFSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|139388150|ref|YP_001123341.1| NADH dehydrogenase subunit [Barbarea verna] gi|156632606|sp|A4QKG1|NDHI_BARVE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|134286541|dbj|BAF50166.1| NADH dehydrogenase subunit [Barbarea verna] Length = 167 Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats. Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHTNRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + +R + Y ID CI+CG C E CP + + +EF+T R EL Sbjct: 77 DLPVVDWKLETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYEFSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|320354155|ref|YP_004195494.1| NADH dehydrogenase subunit I [Desulfobulbus propionicus DSM 2032] gi|320122657|gb|ADW18203.1| NADH dehydrogenase subunit I [Desulfobulbus propionicus DSM 2032] Length = 174 Score = 100 bits (250), Expect = 5e-20, Method: Composition-based stats. Identities = 47/147 (31%), Positives = 71/147 (48%), Gaps = 8/147 (5%) Query: 5 RCNVSFLFLKEFVGAFFLCLRYFFK------AKTTINYPFEKGSTSPRFRGEHALRRYPN 58 + L+L E + +F +YP +K + R+RG H L ++ + Sbjct: 13 KDLYERLYLVEVFKGMAVTFGHFISNFLDNSKLYVRHYPEQKPEITARWRGRHRLTKHED 72 Query: 59 GEERCIACKLCEAICPAQAITIESGPRCH-DGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 G +C+AC +C+ CPA+ I IE+G R + VR+DID+++CIYCG C EACP+DA Sbjct: 73 GTMKCVACFMCQTNCPAKCIMIEAGERVDGRTEKMPVRFDIDLLECIYCGYCVEACPMDA 132 Query: 118 IVE-GPNFEFATETRQELYYDKERLLN 143 I F + R LL Sbjct: 133 IRMDTGIFSVTGDKRSSFVMTLNDLLA 159 >gi|139390209|ref|YP_001123781.1| NADH dehydrogenase subunit I [Lobularia maritima] gi|156632616|sp|A4QLQ1|NDHI_LOBMA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|134286986|dbj|BAF50606.1| NADH dehydrogenase subunit [Lobularia maritima] Length = 167 Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats. Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHTNRLPVTIQYPYEKVITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + +R + Y ID CI+CG C E CP + + +EF+T R EL Sbjct: 77 DLPVVDWKLETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYEFSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|311033314|ref|ZP_07711404.1| NADH dehydrogenase subunit I [Bacillus sp. m3-13] Length = 139 Score = 100 bits (249), Expect = 6e-20, Method: Composition-based stats. Identities = 42/134 (31%), Positives = 54/134 (40%), Gaps = 7/134 (5%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + L+ K K T +YP E RFRG E+CI C C I Sbjct: 1 MLGLAKGLKYTLQNLTKKKVTYDYPNEPLPLPDRFRGIQKFY-----PEKCIVCNQCSNI 55 Query: 73 CPAQAITIESGPRCHD--GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 CP I + + YDI+ CI C LC E CP +AI+ NFE A + Sbjct: 56 CPTDCIQLTGKKHPDPTKKGKIIDTYDINFEICILCDLCTEVCPTEAIIMTNNFELAEYS 115 Query: 131 RQELYYDKERLLNN 144 R L+ D + L N Sbjct: 116 RDRLFKDLQWLDEN 129 >gi|262400772|gb|ACY66261.1| NADH dehydrogenase subunit I [Brassica napus] Length = 167 Score = 100 bits (249), Expect = 6e-20, Method: Composition-based stats. Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHTNRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + +R + Y ID CI+CG C E CP + + +EF+T R EL Sbjct: 77 DLPVVDWKLETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYEFSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|108802696|ref|YP_636353.1| NADH dehydrogenase subunit I [Eucalyptus globulus subsp. globulus] gi|309322499|ref|YP_003934012.1| NADH-plastoquinone oxidoreductase subunit I [Eucalyptus grandis] gi|110287697|sp|Q49KU4|NDHI_EUCGG RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|60460862|gb|AAX21082.1| NADH-plastoquinone oxidoreductase subunit I [Eucalyptus globulus subsp. globulus] gi|308223333|gb|ADO23641.1| NADH-plastoquinone oxidoreductase subunit I [Eucalyptus grandis] Length = 167 Score = 100 bits (249), Expect = 6e-20, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETGIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|81301632|ref|YP_398927.1| NADH dehydrogenase subunit I [Nicotiana tomentosiformis] gi|110287702|sp|Q33BW8|NDHI_NICTO RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|80750991|dbj|BAE48067.1| NADH dehydrogenase 18kD subunit [Nicotiana tomentosiformis] Length = 167 Score = 100 bits (249), Expect = 6e-20, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|290489758|gb|ADD31286.1| NADH-plastoquinone oxidoreductase subunit I protein [Ilex cornuta] Length = 167 Score = 100 bits (249), Expect = 6e-20, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK S RFRG +CIAC++C +CP Sbjct: 22 IGQGFTITLSHANRLPVTIQYPYEKLIISERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|197121695|ref|YP_002133646.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Anaeromyxobacter sp. K] gi|220916491|ref|YP_002491795.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|196171544|gb|ACG72517.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Anaeromyxobacter sp. K] gi|219954345|gb|ACL64729.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 239 Score = 100 bits (249), Expect = 6e-20, Method: Composition-based stats. Identities = 50/182 (27%), Positives = 74/182 (40%), Gaps = 31/182 (17%) Query: 10 FLFLKEFVGAFFLCLRYFFKA-----------------------KTTINYPFEKGSTSPR 46 ++ E + ++F K T+ YP E+ +P Sbjct: 15 SMYFPEIIRGIGTITKHFLKNLFFSRDANPDILARKRGGFGHSDNVTLQYPEERAPYAPA 74 Query: 47 FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG-TRRTVRYDIDMIKCIY 105 +RG H L +G+ RC+AC +C ICPAQ I IE+ D + ++ ID ++CI Sbjct: 75 YRGLHRLVPREDGKPRCVACYMCATICPAQCIYIEAAEYPDDPVEKYPAKFVIDELRCIV 134 Query: 106 CGLCQEACPVDAIVE-GPNFEFATETRQELYYDKERLLNN------GDRWESEIVRNIVT 158 CG C EACP DAI + R +D++RLL D W +I Sbjct: 135 CGFCVEACPKDAIRMDSGEHTPPSYERSAQIWDEKRLLRGPPVSYQYDPWLRRGSPSIPP 194 Query: 159 DS 160 D Sbjct: 195 DK 196 >gi|86158986|ref|YP_465771.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Anaeromyxobacter dehalogenans 2CP-C] gi|110287754|sp|Q2IL01|NUOI1_ANADE RecName: Full=NADH-quinone oxidoreductase subunit I 1; AltName: Full=NADH dehydrogenase I subunit I 1; AltName: Full=NDH-1 subunit I 1 gi|85775497|gb|ABC82334.1| NADH dehydrogenase subunit I [Anaeromyxobacter dehalogenans 2CP-C] Length = 239 Score = 100 bits (249), Expect = 6e-20, Method: Composition-based stats. Identities = 50/182 (27%), Positives = 74/182 (40%), Gaps = 31/182 (17%) Query: 10 FLFLKEFVGAFFLCLRYFFKA-----------------------KTTINYPFEKGSTSPR 46 ++ E + ++F K T+ YP E+ +P Sbjct: 15 SMYFPEIIRGIGTITKHFLKNLFFSRDANPDILARKRGGFGHSDNVTLQYPEERAPYAPA 74 Query: 47 FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG-TRRTVRYDIDMIKCIY 105 +RG H L +G+ RC+AC +C ICPAQ I IE+ D + ++ ID ++CI Sbjct: 75 YRGLHRLVPREDGKPRCVACYMCATICPAQCIYIEAAEYPDDPVEKYPAKFVIDELRCIV 134 Query: 106 CGLCQEACPVDAIVE-GPNFEFATETRQELYYDKERLLNN------GDRWESEIVRNIVT 158 CG C EACP DAI + R +D++RLL D W +I Sbjct: 135 CGFCVEACPKDAIRMDSGEHTPPSYERSAQIWDEKRLLRGPPVSYQYDPWLRRGSPSIPP 194 Query: 159 DS 160 D Sbjct: 195 DK 196 >gi|225544176|ref|YP_002720166.1| ndhI [Jatropha curcas] gi|224979617|gb|ACN72744.1| ndhI [Jatropha curcas] Length = 170 Score = 100 bits (249), Expect = 6e-20, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWQLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|139389698|ref|YP_001123254.1| NADH dehydrogenase subunit [Arabis hirsuta] gi|156632605|sp|A4QK74|NDHI_ARAHI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|134286453|dbj|BAF50079.1| NADH dehydrogenase subunit [Arabis hirsuta] Length = 167 Score = 100 bits (249), Expect = 6e-20, Method: Composition-based stats. Identities = 41/122 (33%), Positives = 59/122 (48%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHTNRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + +R + Y ID CI+CG C E CP + + +EFAT R EL Sbjct: 77 DLPVVDWKLETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYEFATYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|290489766|gb|ADD31290.1| NADH-plastoquinone oxidoreductase subunit I protein [Nerium oleander] Length = 167 Score = 100 bits (249), Expect = 6e-20, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFTITLSHANRLPITIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R Y ID CI+CG C E CP + + +E ++ R EL Sbjct: 77 DLPVVDWKLESDIRKKRLFNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSSYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|11466019|ref|NP_054561.1| NADH dehydrogenase subunit I [Nicotiana tabacum] gi|28261773|ref|NP_783286.1| NADH dehydrogenase subunit I [Atropa belladonna] gi|78102602|ref|YP_358741.1| NADH dehydrogenase subunit I [Nicotiana sylvestris] gi|120539|sp|P06252|NDHI_TOBAC RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75295516|sp|Q7FNR7|NDHI_ATRBE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|110287701|sp|Q3C1Q0|NDHI_NICSY RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|1223671|emb|CAA77397.1| NADH dehydrogenase 18kD subunit [Nicotiana tabacum] gi|20068387|emb|CAC88100.1| NADH dehydrogenase 18kD subunit [Atropa belladonna] gi|77799629|dbj|BAE46718.1| NADH dehydrogenase 18kD subunit [Nicotiana sylvestris] gi|225259|prf||1211235CU ORF 167 Length = 167 Score = 100 bits (249), Expect = 6e-20, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|290489764|gb|ADD31289.1| NADH-plastoquinone oxidoreductase subunit I protein [Nelumbo nucifera] Length = 180 Score = 100 bits (249), Expect = 6e-20, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWRLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|297569880|ref|YP_003691224.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfurivibrio alkaliphilus AHT2] gi|296925795|gb|ADH86605.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfurivibrio alkaliphilus AHT2] Length = 146 Score = 100 bits (249), Expect = 6e-20, Method: Composition-based stats. Identities = 36/124 (29%), Positives = 57/124 (45%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 K V + +Y + T+ YP + +PR+RG L +CIAC +C+ C Sbjct: 13 KSLVVGLGITFKYMIRPVVTLQYPRQAVKMAPRYRGHIDLVPDAESGNKCIACGMCQRNC 72 Query: 74 PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 P+ IT++S + Y +D KC CGLC E+CP DA+ + A ++ Sbjct: 73 PSGCITLKSEKPEGAKKKVLTGYRLDFTKCSLCGLCVESCPTDALDFSKEYNLAGFKAED 132 Query: 134 LYYD 137 +D Sbjct: 133 FVFD 136 >gi|239929559|ref|ZP_04686512.1| NADH dehydrogenase subunit NuoI2 [Streptomyces ghanaensis ATCC 14672] gi|291437885|ref|ZP_06577275.1| NADH-quinone oxidoreductase subunit I 2 [Streptomyces ghanaensis ATCC 14672] gi|291340780|gb|EFE67736.1| NADH-quinone oxidoreductase subunit I 2 [Streptomyces ghanaensis ATCC 14672] Length = 223 Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats. Identities = 41/139 (29%), Positives = 57/139 (41%), Gaps = 14/139 (10%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + LR K T YP + + PR RG L EE C C LC C Sbjct: 7 SGLAKGLAVTLRTMTKKPVTDQYPDTQPALPPRTRGVIGLF-----EENCTVCMLCAREC 61 Query: 74 PAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 P I I+S R+ ID C+YCG+C E CP DA+ P F Sbjct: 62 PDWCIYIDSHKETIPATTPGGRERSRNVLDRFAIDFSLCMYCGICIEVCPFDALFWSPEF 121 Query: 125 EFATETRQELYYDKERLLN 143 E+A ++L +++++L Sbjct: 122 EYAETDIRDLTHERDKLRE 140 >gi|164597843|ref|NP_084755.2| NADH dehydrogenase subunit I [Oenothera elata subsp. hookeri] gi|169142763|ref|YP_001687190.1| NADH dehydrogenase subunit I [Oenothera argillicola] gi|169142913|ref|YP_001687336.1| NADH dehydrogenase subunit I [Oenothera glazioviana] gi|169142998|ref|YP_001687420.1| NADH dehydrogenase subunit I [Oenothera biennis] gi|169143084|ref|YP_001687504.1| NADH dehydrogenase subunit I [Oenothera parviflora] gi|172045751|sp|Q9MTH8|NDHI_OENEH RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|159793001|gb|ABW98757.1| NADH dehydrogenase subunit I [Oenothera argillicola] gi|159793171|gb|ABW98925.1| NADH dehydrogenase subunit I [Oenothera biennis] gi|159895525|gb|ABX10090.1| NADH dehydrogenase subunit I [Oenothera glazioviana] gi|159895610|gb|ABX10174.1| NADH dehydrogenase subunit I [Oenothera parviflora] gi|162423711|emb|CAB67224.2| NADH dehydrogenase subunit I [Oenothera elata subsp. hookeri] Length = 165 Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETGVRKKRLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|21222986|ref|NP_628765.1| NADH dehydrogenase subunit NuoI2 [Streptomyces coelicolor A3(2)] gi|256785901|ref|ZP_05524332.1| NADH dehydrogenase subunit NuoI2 [Streptomyces lividans TK24] gi|289769794|ref|ZP_06529172.1| NADH-quinone oxidoreductase subunit I 2 [Streptomyces lividans TK24] gi|81783418|sp|Q9F2V8|NUOI2_STRCO RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName: Full=NADH dehydrogenase I subunit I 2; AltName: Full=NDH-1 subunit I 2 gi|10129699|emb|CAC08256.1| NADH dehydrogenase subunit NuoI2 [Streptomyces coelicolor A3(2)] gi|289699993|gb|EFD67422.1| NADH-quinone oxidoreductase subunit I 2 [Streptomyces lividans TK24] Length = 197 Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats. Identities = 40/139 (28%), Positives = 56/139 (40%), Gaps = 14/139 (10%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + LR + T YP + PR RG L EE C C LC C Sbjct: 7 SGLAKGLAVTLRTMTRKTVTEQYPDAQPELPPRTRGVIGLF-----EENCTVCMLCAREC 61 Query: 74 PAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 P I I+S R+ ID C+YCG+C E CP DA+ P F Sbjct: 62 PDWCIYIDSHKETVPAATPGGRDRSRNVLDRFAIDFALCMYCGICIEVCPFDALFWSPEF 121 Query: 125 EFATETRQELYYDKERLLN 143 E+A ++L +++++L Sbjct: 122 EYAETDIRDLTHERDKLRE 140 >gi|78778014|ref|YP_394329.1| NADH dehydrogenase subunit I [Sulfurimonas denitrificans DSM 1251] gi|110287777|sp|Q30PI7|NUOI_SULDN RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|78498554|gb|ABB45094.1| NADH-quinone oxidoreductase, chain I [Sulfurimonas denitrificans DSM 1251] Length = 211 Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats. Identities = 44/140 (31%), Positives = 67/140 (47%), Gaps = 3/140 (2%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKT-TINYPFEKGSTSPRFRGEHAL-RRYPNGEE 61 F + E ++ LR + TI YP EK PR+R H + R + + E Sbjct: 38 FTRTLRRAIRGELFVGLWVVLREMIRFDIHTIQYPLEKMPIGPRYRAVHEMKRLWESDTE 97 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RCI C LCE IC + I I++ + + Y I++ +CI+CG C E CP AI G Sbjct: 98 RCIGCGLCEKICISNCIRIDT-KLDENSRKEVTEYSINLGRCIFCGYCAEVCPELAITHG 156 Query: 122 PNFEFATETRQELYYDKERL 141 +E A++ R+ ++ L Sbjct: 157 GEYENASDQREHFIMYQDML 176 >gi|323366672|gb|ADX43805.1| NADH dehydrogenase subunit I [Eutrochium maculatum] Length = 166 Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|290489752|gb|ADD31283.1| NADH-plastoquinone oxidoreductase subunit I protein [Aucuba japonica] Length = 167 Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK T RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITPERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKFETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|139388967|ref|YP_001123693.1| NADH dehydrogenase subunit I [Lepidium virginicum] gi|156632615|sp|A4QLG3|NDHI_LEPVR RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|134286897|dbj|BAF50518.1| NADH dehydrogenase subunit [Lepidium virginicum] Length = 167 Score = 100 bits (249), Expect = 7e-20, Method: Composition-based stats. Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHTNRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + +R + Y ID CI+CG C E CP + + +EF+T R EL Sbjct: 77 DLPVVDWKLETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYEFSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|326909444|ref|YP_004327715.1| NADH dehydrogenase subunit I [Hevea brasiliensis] gi|308523558|gb|ADO33608.1| NADH dehydrogenase subunit I [Hevea brasiliensis] Length = 165 Score = 100 bits (248), Expect = 8e-20, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|223931105|ref|YP_002586967.1| NADH-plastoquinone oxidoreductase subunit I [Syntrichia ruralis] gi|219562319|gb|ACL27650.1| NADH-plastoquinone oxidoreductase subunit I [Syntrichia ruralis] Length = 183 Score = 100 bits (248), Expect = 8e-20, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 55/122 (45%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK S RFRG +CIAC++C +CP Sbjct: 22 IGQGFMVTLDHMNRLPMTIQYPYEKLIPSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + ++ Y ID CI+CG C E CP + + +E + R +L Sbjct: 77 NLPVVDWELKKDIKKKQLKSYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSIYDRHDLN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|218662859|ref|ZP_03518789.1| NADH-ubiquinone oxidoreductase protein [Rhizobium etli IE4771] Length = 165 Score = 100 bits (248), Expect = 8e-20, Method: Composition-based stats. Identities = 46/125 (36%), Positives = 69/125 (55%), Gaps = 2/125 (1%) Query: 20 FFLCLRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78 L Y F T+ YP EK R+RG H L+R GE +C+AC+LC ICP I Sbjct: 1 MALTFGYLFSRTVTMQYPDKEKWLPYSRYRGHHFLKRDEAGEIKCVACELCARICPCDCI 60 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 + G R +++ID +C++CGLC++ACP DAI G +EF++ + ++L + Sbjct: 61 EVVPYED-EKGNRHPAKFEIDTARCLFCGLCEDACPADAIALGQQYEFSSFSSRDLVIGR 119 Query: 139 ERLLN 143 + LL Sbjct: 120 DDLLA 124 >gi|51245168|ref|YP_065052.1| NADH dehydrogenase, subunit 8 [Desulfotalea psychrophila LSv54] gi|50876205|emb|CAG36045.1| similar to NADH dehydrogenase, subunit 8 [Desulfotalea psychrophila LSv54] Length = 145 Score = 100 bits (248), Expect = 8e-20, Method: Composition-based stats. Identities = 36/125 (28%), Positives = 53/125 (42%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 L + + R FF K T+ YP E RFRG L G RC+AC +C Sbjct: 12 LWSLIVGMRITAREFFTPKITVQYPHETEVMPARFRGHIELIGDEEGNTRCVACGMCVRA 71 Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 CP+ I + + Y++D KC CG C E+C AI + + ++ Sbjct: 72 CPSGCIKVSGEKLEGSKKKIATVYELDFTKCSLCGSCIESCNFGAIQFSRVYNHVSTKKE 131 Query: 133 ELYYD 137 + YY+ Sbjct: 132 DFYYN 136 >gi|222824430|ref|YP_002576004.1| NADH-quinone oxidoreductase, I subunit [Campylobacter lari RM2100] gi|222539651|gb|ACM64752.1| NADH-quinone oxidoreductase, I subunit [Campylobacter lari RM2100] Length = 210 Score = 100 bits (248), Expect = 8e-20, Method: Composition-based stats. Identities = 52/165 (31%), Positives = 75/165 (45%), Gaps = 9/165 (5%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKA--KTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 F + E ++ LR K TI YP EK S R+R H L R+ E Sbjct: 22 FIQIIKRSLNTELFVGLYVVLREMLKKNNSATIKYPMEKVSLDNRYRAVHRLMRFIESEN 81 Query: 62 RC-IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C I C LCE IC + I +E+ DG ++ Y I++ +CIYCG C + CP AIV Sbjct: 82 ECCIGCGLCEKICISNCIRMETSL-GEDGRKKVENYSINLGRCIYCGFCADVCPELAIVH 140 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEI----VRNIVTDSP 161 G +E A E R K+ L D ++++ ++ D+ Sbjct: 141 GKEYENAAEQRSYFG-QKQDFLTPIDELKNQVIFEGSGSLRKDAD 184 >gi|323149136|ref|YP_004222700.1| NADH-plastoquinone oxidoreductase subunit I [Anthriscus cerefolium] gi|289645629|gb|ADD13692.1| NADH-plastoquinone oxidoreductase subunit I [Anthriscus cerefolium] Length = 167 Score = 100 bits (248), Expect = 8e-20, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHASRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|220907086|ref|YP_002482397.1| NADH dehydrogenase subunit I [Cyanothece sp. PCC 7425] gi|254767212|sp|B8HQP6|NDHI_CYAP4 RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName: Full=NAD(P)H dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I; Short=NDH-I gi|219863697|gb|ACL44036.1| NADH-plastoquinone oxidoreductase, I subunit [Cyanothece sp. PCC 7425] Length = 193 Score = 100 bits (248), Expect = 8e-20, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 51/122 (41%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + + T+ YP+EK S RFRG +CI+C++C +CP Sbjct: 22 IGQGLAVTFDHMRRRPVTVQYPYEKLIPSERFRGRIHFEFD-----KCISCEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ ++ Y ID CI+C C E CP + + +E + R EL Sbjct: 77 NLPVVDWEFNKELKKKQLKHYSIDFGVCIFCANCVEYCPTNCLSVTEEYELSVYDRHELN 136 Query: 136 YD 137 +D Sbjct: 137 FD 138 >gi|168188225|gb|ACA14502.1| NADH dehydrogenase subunit I [Atractylis cancellata] Length = 166 Score = 100 bits (248), Expect = 8e-20, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|296936725|gb|ADH94397.1| NADH-plastoquinone oxidoreductase subunit I [Syzygium cumini] Length = 167 Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFIITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETGIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|156573661|gb|ABU85164.1| NADH-plastoquinone oxidoreductase subunit I [Anethum graveolens] Length = 167 Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHASRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|261420756|ref|YP_003254438.1| NADH dehydrogenase subunit I [Geobacillus sp. Y412MC61] gi|297531551|ref|YP_003672826.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacillus sp. C56-T3] gi|319768426|ref|YP_004133927.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacillus sp. Y412MC52] gi|261377213|gb|ACX79956.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacillus sp. Y412MC61] gi|297254803|gb|ADI28249.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacillus sp. C56-T3] gi|317113292|gb|ADU95784.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacillus sp. Y412MC52] Length = 139 Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats. Identities = 42/134 (31%), Positives = 55/134 (41%), Gaps = 7/134 (5%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + + L+ + K T +YP E RFRG E+CI C C I Sbjct: 1 MIGLMKGLAYTLKELTREKVTYDYPHEPLPLPDRFRGIQKFY-----PEKCIVCNQCVNI 55 Query: 73 CPAQAITIESGPRCHD--GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 CP + I + + Y+I+ CI C LC E CP +AIV NFE A + Sbjct: 56 CPTECIQLTGKKHPDPTKKGKVIETYNINFEICILCDLCTEVCPTEAIVMTNNFELAEYS 115 Query: 131 RQELYYDKERLLNN 144 R LY D L N Sbjct: 116 RDALYKDLAWLDEN 129 >gi|168188229|gb|ACA14504.1| NADH dehydrogenase subunit I [Barnadesia spinosa] Length = 166 Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|169794126|ref|YP_001718490.1| NADH dehydrogenase subunit I [Manihot esculenta] gi|157695938|gb|ABV66207.1| NADH-plastoquinone oxidoreductase subunit I [Manihot esculenta] Length = 165 Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + T+ YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTVQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|157325587|ref|YP_001468365.1| NADH dehydrogenase subunit I [Ipomoea purpurea] gi|157056815|gb|ABV02405.1| NADH-plastoquinone oxidoreductase subunit I [Ipomoea purpurea] Length = 167 Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK T RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITPERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWQLETDIRKKRLLNYSIDFGLCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 ++ Sbjct: 137 FN 138 >gi|91208952|ref|YP_538986.1| NADH dehydrogenase subunit I [Gossypium hirsutum] gi|119368553|ref|YP_913240.1| NADH dehydrogenase 18kD subunit [Gossypium barbadense] gi|110287698|sp|Q2L959|NDHI_GOSHI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|125952732|sp|A0ZZ89|NDHI_GOSBA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|85687466|gb|ABC73678.1| NADH-plastoquinone oxidoreductase subunit I [Gossypium hirsutum] gi|119224915|dbj|BAF41301.1| NADH dehydrogenase 18kD subunit [Gossypium barbadense] Length = 167 Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKFETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|168188237|gb|ACA14508.1| NADH dehydrogenase subunit I [Carthamus tinctorius] gi|168188239|gb|ACA14509.1| NADH dehydrogenase subunit I [Centaurea melitensis] Length = 166 Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIKKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|75300807|sp|Q8HVJ9|NDHI_TRIME RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300822|sp|Q8HVL4|NDHI_SIGBL RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300852|sp|Q8HVP4|NDHI_MILQU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|24460640|gb|AAN61760.1| NADH dehydrogenase subunit I [Milleria quinqueflora] gi|24460700|gb|AAN61790.1| NADH dehydrogenase subunit I [Sigesbeckia blakei] gi|24460730|gb|AAN61805.1| NADH dehydrogenase subunit I [Trigonospermum melampodioides] Length = 166 Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|108804038|ref|YP_643975.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Rubrobacter xylanophilus DSM 9941] gi|108765281|gb|ABG04163.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Rubrobacter xylanophilus DSM 9941] Length = 183 Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats. Identities = 40/123 (32%), Positives = 54/123 (43%), Gaps = 9/123 (7%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + L++ F+ K T YP K R RG +RCI+C C +CP Sbjct: 8 ILKGMGITLKHLFEKKITRQYPEYKREMPERTRG-----MLTVDMDRCISCLQCMRVCPD 62 Query: 76 QAITIESGPRCHDGTRRTVRY----DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 ITI R DG+ + Y ID +C+YC LC E CPV+ I FE R Sbjct: 63 HCITIVQDRRDADGSGKPRPYSMGFMIDDSRCMYCALCVEVCPVNCIYHTEEFEIQAYNR 122 Query: 132 QEL 134 +L Sbjct: 123 LDL 125 >gi|158335315|ref|YP_001516487.1| NADH dehydrogenase subunit I [Acaryochloris marina MBIC11017] gi|226724528|sp|B0BZW3|NDHI_ACAM1 RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName: Full=NAD(P)H dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I; Short=NDH-I gi|158305556|gb|ABW27173.1| proton-translocating NAD(P)H-quinone oxidoreductase, chain I [Acaryochloris marina MBIC11017] Length = 200 Score = 100 bits (248), Expect = 9e-20, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + + T+ YP+EK S RFRG +CI+C++C +CP Sbjct: 22 IGQGLAVTFDHMKRRPITVQYPYEKLIPSERFRGRIHFEFD-----KCISCEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ ++ Y ID CI+C C E CP + + +E +T R EL Sbjct: 77 NLPVVDWEFNKEIKKKQLKHYSIDFGVCIFCANCVEYCPTNCLSVTEEYELSTFDRHELN 136 Query: 136 YD 137 +D Sbjct: 137 FD 138 >gi|149390318|ref|YP_001294149.1| NADH-plastoquinone oxidoreductase subunit I [Chloranthus spicatus] gi|156632610|sp|A6MMH3|NDHI_CHLSC RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|146744238|gb|ABQ43310.1| NADH-plastoquinone oxidoreductase subunit I [Chloranthus spicatus] Length = 180 Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFMITLSHANRLPVTIQYPYEKSITSERFRGRIHFELD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWRLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|168188245|gb|ACA14512.1| NADH dehydrogenase subunit I [Chaptalia nutans] Length = 166 Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK T RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITPERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|139390006|ref|YP_001123605.1| NADH dehydrogenase subunit [Draba nemorosa] gi|156632613|sp|A4QL75|NDHI_DRANE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|134286808|dbj|BAF50430.1| NADH dehydrogenase subunit [Draba nemorosa] Length = 167 Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 40/122 (32%), Positives = 59/122 (48%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHTNRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + +R + Y ID CI+CG C E CP + + +EF+T R EL Sbjct: 77 DLPVVDWKLETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYEFSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|75300830|sp|Q8HVM2|NDHI_PSIGN RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300855|sp|Q8HVP7|NDHI_MARCE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300871|sp|Q8HVR3|NDHI_HYMLE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300876|sp|Q8HVR8|NDHI_HELBG RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|24460592|gb|AAN61736.1| NADH dehydrogenase subunit I [Helenium bigelovii] gi|24460602|gb|AAN61741.1| NADH dehydrogenase subunit I [Hymenoxys lemmonii] gi|24460634|gb|AAN61757.1| NADH dehydrogenase subunit I [Marshallia caespitosa] gi|24460684|gb|AAN61782.1| NADH dehydrogenase subunit I [Psilostrophe gnaphalodes] Length = 166 Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|11466442|ref|NP_038448.1| NADH dehydrogenase subunit I [Mesostigma viride] gi|14194989|sp|Q9MUL2|NDHI_MESVI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|7259585|gb|AAF43886.1|AF166114_98 subunit I of NADH-plastoquinoneoxidoreductase [Mesostigma viride] Length = 176 Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 53/122 (43%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + + + TI YP+EK S RFRG +CIAC++C +CP Sbjct: 22 IGQGFMVTFDHMNRRAITIQYPYEKLIPSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 + + ++ Y ID CI+CG C E CP + + +E + R EL Sbjct: 77 NLPVVNWEFQKEKKKKQLQTYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSVYDRHELN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|91203927|emb|CAJ71580.1| strongly similar to NADH dehydrogenase I subunit I [Candidatus Kuenenia stuttgartiensis] Length = 139 Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 49/134 (36%), Positives = 70/134 (52%), Gaps = 4/134 (2%) Query: 16 FVGAFFLCLRYFFKAK--TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 V L L+ F T +YP + + RFRG L+ +G E+C+AC LC +C Sbjct: 5 LVKGLLLTLKRFLNPFTCVTESYPDARPRLAKRFRGLPELQIGEDGREKCVACGLCAKVC 64 Query: 74 PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 P+Q I+IE R Y++D +CI+CG C+EACP AI+ G FE AT + Sbjct: 65 PSQCISIEGAED-EQFRRYPSMYELDSFRCIFCGFCEEACPERAILLGDVFELAT-DKNS 122 Query: 134 LYYDKERLLNNGDR 147 DKE+LL + + Sbjct: 123 GVLDKEKLLESARK 136 >gi|290489788|gb|ADD31301.1| NADH-plastoquinone oxidoreductase subunit I protein [Plumbago auriculata] Length = 170 Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFLITLSHANRLPITIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|168188323|gb|ACA14550.1| NADH dehydrogenase subunit I [Macledium zeyheri] Length = 166 Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLENDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|75300902|sp|Q8HVU4|NDHI_CORPT RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|24460539|gb|AAN61710.1| NADH dehydrogenase subunit I [Coreopsis petrophiloides] Length = 166 Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 40/122 (32%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R V Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWQLETDIRKKRLVNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|75300816|sp|Q8HVK8|NDHI_STESO RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|24460712|gb|AAN61796.1| NADH dehydrogenase subunit I [Steiractinia sodiroi] Length = 166 Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPM 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|325210979|ref|YP_004286057.1| NADH-plastoquinone oxidoreductase subunit I [Gossypium thurberi] gi|290775841|gb|ADD62337.1| NADH-plastoquinone oxidoreductase subunit I [Gossypium thurberi] Length = 167 Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKFETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|290958203|ref|YP_003489385.1| NADH dehydrogenase subunit NuoI2 [Streptomyces scabiei 87.22] gi|260647729|emb|CBG70834.1| NADH dehydrogenase subunit NuoI2 [Streptomyces scabiei 87.22] Length = 192 Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 41/139 (29%), Positives = 55/139 (39%), Gaps = 14/139 (10%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + LR + T YP + PR RG L EE C C LC C Sbjct: 7 SGLAKGLAVTLRTMTRKTVTAQYPDVQPELPPRTRGVIGLF-----EENCTVCMLCAREC 61 Query: 74 PAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 P I I+S R+ ID C+YCG+C E CP DA+ P F Sbjct: 62 PDWCIYIDSHKETVPPSAPGGRERSRNVLDRFAIDFSLCMYCGICIEVCPFDALFWSPEF 121 Query: 125 EFATETRQELYYDKERLLN 143 E+A EL +++++L Sbjct: 122 EYAETDIHELTHERDKLRE 140 >gi|168188249|gb|ACA14514.1| NADH dehydrogenase subunit I [Chrysanthemoides monilifera] gi|168188337|gb|ACA14557.1| NADH dehydrogenase subunit I [Osteospermum asperulum] Length = 166 Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|75300840|sp|Q8HVN2|NDHI_PERLI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|24460664|gb|AAN61772.1| NADH dehydrogenase subunit I [Perityle lindheimeri] Length = 166 Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|75300860|sp|Q8HVQ2|NDHI_TRIPN RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300912|sp|Q8HVV4|NDHI_BAHAB RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|24460519|gb|AAN61700.1| NADH dehydrogenase subunit I [Bahia absinthifolia] gi|24460624|gb|AAN61752.1| NADH dehydrogenase subunit I [Trilisa paniculata] gi|323366670|gb|ADX43804.1| NADH dehydrogenase subunit I [Eupatorium hyssopifolium] gi|323366674|gb|ADX43806.1| NADH dehydrogenase subunit I [Garberia heterophylla] gi|323366676|gb|ADX43807.1| NADH dehydrogenase subunit I [Garberia heterophylla] gi|323366678|gb|ADX43808.1| NADH dehydrogenase subunit I [Garberia heterophylla] gi|323366680|gb|ADX43809.1| NADH dehydrogenase subunit I [Carphephorus corymbosus] gi|323366682|gb|ADX43810.1| NADH dehydrogenase subunit I [Carphephorus corymbosus] gi|323366684|gb|ADX43811.1| NADH dehydrogenase subunit I [Carphephorus corymbosus] gi|323366686|gb|ADX43812.1| NADH dehydrogenase subunit I [Carphephorus corymbosus] gi|323366688|gb|ADX43813.1| NADH dehydrogenase subunit I [Hartwrightia floridana] gi|323366690|gb|ADX43814.1| NADH dehydrogenase subunit I [Hartwrightia floridana] gi|323366692|gb|ADX43815.1| NADH dehydrogenase subunit I [Litrisa carnosa] gi|323366694|gb|ADX43816.1| NADH dehydrogenase subunit I [Litrisa carnosa] gi|323366696|gb|ADX43817.1| NADH dehydrogenase subunit I [Carphephorus pseudoliatris] gi|323366698|gb|ADX43818.1| NADH dehydrogenase subunit I [Carphephorus pseudoliatris] gi|323366700|gb|ADX43819.1| NADH dehydrogenase subunit I [Carphephorus pseudoliatris] gi|323366702|gb|ADX43820.1| NADH dehydrogenase subunit I [Carphephorus pseudoliatris] gi|323366704|gb|ADX43821.1| NADH dehydrogenase subunit I [Carphephorus bellidifolius] gi|323366706|gb|ADX43822.1| NADH dehydrogenase subunit I [Carphephorus bellidifolius] gi|323366708|gb|ADX43823.1| NADH dehydrogenase subunit I [Carphephorus bellidifolius] gi|323366710|gb|ADX43824.1| NADH dehydrogenase subunit I [Carphephorus tomentosus] gi|323366712|gb|ADX43825.1| NADH dehydrogenase subunit I [Carphephorus tomentosus] gi|323366714|gb|ADX43826.1| NADH dehydrogenase subunit I [Carphephorus tomentosus] gi|323366716|gb|ADX43827.1| NADH dehydrogenase subunit I [Carphephorus tomentosus] gi|323366718|gb|ADX43828.1| NADH dehydrogenase subunit I [Liatris spicata] gi|323366720|gb|ADX43829.1| NADH dehydrogenase subunit I [Liatris elegantula] gi|323366722|gb|ADX43830.1| NADH dehydrogenase subunit I [Liatris microcephala] gi|323366724|gb|ADX43831.1| NADH dehydrogenase subunit I [Liatris squarrulosa] gi|323366726|gb|ADX43832.1| NADH dehydrogenase subunit I [Liatris aspera] gi|323366728|gb|ADX43833.1| NADH dehydrogenase subunit I [Liatris microcephala] gi|323366730|gb|ADX43834.1| NADH dehydrogenase subunit I [Liatris elegans] gi|323366732|gb|ADX43835.1| NADH dehydrogenase subunit I [Liatris spicata] gi|323366734|gb|ADX43836.1| NADH dehydrogenase subunit I [Liatris tenuifolia] gi|323366736|gb|ADX43837.1| NADH dehydrogenase subunit I [Trilisa paniculata] gi|323366738|gb|ADX43838.1| NADH dehydrogenase subunit I [Trilisa paniculata] gi|323366740|gb|ADX43839.1| NADH dehydrogenase subunit I [Trilisa paniculata] gi|323366742|gb|ADX43840.1| NADH dehydrogenase subunit I [Trilisa paniculata] gi|323366744|gb|ADX43841.1| NADH dehydrogenase subunit I [Trilisa paniculata] gi|323366746|gb|ADX43842.1| NADH dehydrogenase subunit I [Trilisa odoratissima] gi|323366748|gb|ADX43843.1| NADH dehydrogenase subunit I [Trilisa odoratissima] gi|323366750|gb|ADX43844.1| NADH dehydrogenase subunit I [Trilisa odoratissima] gi|323366752|gb|ADX43845.1| NADH dehydrogenase subunit I [Trilisa odoratissima] gi|323366754|gb|ADX43846.1| NADH dehydrogenase subunit I [Trilisa odoratissima] gi|323366756|gb|ADX43847.1| NADH dehydrogenase subunit I [Trilisa odoratissima] gi|323366758|gb|ADX43848.1| NADH dehydrogenase subunit I [Trilisa odoratissima] Length = 166 Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|291303392|ref|YP_003514670.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Stackebrandtia nassauensis DSM 44728] gi|290572612|gb|ADD45577.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Stackebrandtia nassauensis DSM 44728] Length = 168 Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 44/136 (32%), Positives = 57/136 (41%), Gaps = 13/136 (9%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L+ K T YP E PR RG AL+ E C C LC C Sbjct: 6 SGLAKGLAVTLKTMTKPSHTHQYPDESPELPPRTRGVIALQ-----EANCTVCMLCAREC 60 Query: 74 PAQAITIESGPRC--------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 P I I+S ++DID C+YCG+C E CP DA+ P FE Sbjct: 61 PDWCIYIDSHKETVEVPGAARPRQRNVLDKFDIDFSLCMYCGICIEVCPFDALFWSPEFE 120 Query: 126 FATETRQELYYDKERL 141 +A + L +DK+RL Sbjct: 121 YAEGDIRNLLHDKDRL 136 >gi|114330024|ref|YP_740705.1| NADH-plastoquinone oxidoreductase subunit I [Nandina domestica] gi|122165913|sp|Q09FQ6|NDHI_NANDO RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|114054526|gb|ABI49919.1| NADH-plastoquinone oxidoreductase subunit I [Nandina domestica] Length = 180 Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|52220865|ref|YP_087020.1| NADH dehydrogenase subunit I [Panax ginseng] gi|75289351|sp|Q68RV2|NDHI_PANGI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|51235368|gb|AAT98564.1| NADH dehydrogenase 18 kDa subunit [Panax ginseng] Length = 167 Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLEMDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|75300873|sp|Q8HVR5|NDHI_HULAL RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|24460598|gb|AAN61739.1| NADH dehydrogenase subunit I [Hulsea algida] Length = 166 Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGLIITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|168188311|gb|ACA14544.1| NADH dehydrogenase subunit I [Jungia polita] Length = 166 Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPM 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|168188258|gb|ACA14518.1| NADH dehydrogenase subunit I [Dasyphyllum reticulatum] Length = 166 Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHSNRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|75300905|sp|Q8HVU7|NDHI_CHASO RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|24460533|gb|AAN61707.1| NADH dehydrogenase subunit I [Chamaechaenactis scaposa] Length = 166 Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK S RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLIISERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|168188205|gb|ACA14492.1| NADH dehydrogenase subunit I [Achillea millefolium] gi|168188333|gb|ACA14555.1| NADH dehydrogenase subunit I [Oncosiphon grandiflorum] Length = 166 Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|292655142|ref|YP_003535039.1| NADH dehydrogenase-like complex subunit I [Haloferax volcanii DS2] gi|291370688|gb|ADE02915.1| NADH dehydrogenase-like complex subunit I [Haloferax volcanii DS2] Length = 153 Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 46/130 (35%), Positives = 68/130 (52%), Gaps = 11/130 (8%) Query: 13 LKEFVGAFFLCLRYFF-KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71 + + + L++ T+ YP SPRFRG H +ERCI C+ CE Sbjct: 1 MIGILKGMAVTLKHALDGQTFTVEYPETAPEVSPRFRGVHKF-----SQERCIWCRQCEN 55 Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 +CP I I + R +Y++ + +CIYC LC+E CPVDAI+ NFEF +T+ Sbjct: 56 VCPNDTIQIVQDDQ-----RNGEQYNLHIGQCIYCRLCEEVCPVDAILLTQNFEFTADTK 110 Query: 132 QELYYDKERL 141 + Y+KE+L Sbjct: 111 NDFVYNKEQL 120 >gi|75300896|sp|Q8HVT8|NDHI_DIMHO RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|24460551|gb|AAN61716.1| NADH dehydrogenase subunit I [Dimeresia howellii] Length = 166 Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHVNRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|168188272|gb|ACA14525.1| NADH dehydrogenase subunit I [Echinops ritro] Length = 166 Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|75300832|sp|Q8HVM4|NDHI_PSAAN RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300836|sp|Q8HVM8|NDHI_PHABO RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300868|sp|Q8HVR0|NDHI_INUBR RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300910|sp|Q8HVV2|NDHI_BLEZA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300913|sp|Q8HVV5|NDHI_ATHGP RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|24460517|gb|AAN61699.1| NADH dehydrogenase subunit I [Athroisma gracile subsp. psyllioides] gi|24460523|gb|AAN61702.1| NADH dehydrogenase subunit I [Blepharispermum zanguebaricum] gi|24460608|gb|AAN61744.1| NADH dehydrogenase subunit I [Inula britannica] gi|24460672|gb|AAN61776.1| NADH dehydrogenase subunit I [Phaneroglossa bolusii] gi|24460680|gb|AAN61780.1| NADH dehydrogenase subunit I [Psathyrotes annua] gi|168188213|gb|ACA14496.1| NADH dehydrogenase subunit I [Adenocaulon chilense] gi|168188227|gb|ACA14503.1| NADH dehydrogenase subunit I [Baccharis neglecta] gi|168188231|gb|ACA14505.1| NADH dehydrogenase subunit I [Berkheya purpurea] gi|168188233|gb|ACA14506.1| NADH dehydrogenase subunit I [Brachyclados caespitosus] gi|168188241|gb|ACA14510.1| NADH dehydrogenase subunit I [Centratherum punctatum] gi|168188247|gb|ACA14513.1| NADH dehydrogenase subunit I [Chimantaea humilis] gi|168188264|gb|ACA14521.1| NADH dehydrogenase subunit I [Dinoseris salicifolia] gi|168188266|gb|ACA14522.1| NADH dehydrogenase subunit I [Dolichlasium lagascae] gi|168188274|gb|ACA14526.1| NADH dehydrogenase subunit I [Eremanthus erythropappus] gi|168188276|gb|ACA14527.1| NADH dehydrogenase subunit I [Erigeron tenuis] gi|168188292|gb|ACA14535.1| NADH dehydrogenase subunit I [Gorteria diffusa] gi|168188299|gb|ACA14538.1| NADH dehydrogenase subunit I [Hesperomannia arbuscula] gi|168188303|gb|ACA14540.1| NADH dehydrogenase subunit I [Hoplophyllum spinosum] gi|168188309|gb|ACA14543.1| NADH dehydrogenase subunit I [Ianthopappus corymbosus] gi|168188313|gb|ACA14545.1| NADH dehydrogenase subunit I [Leucheria thermarum] gi|168188315|gb|ACA14546.1| NADH dehydrogenase subunit I [Leucomeris spectabilis] gi|168188317|gb|ACA14547.1| NADH dehydrogenase subunit I [Sinclairia palmeri] gi|168188329|gb|ACA14553.1| NADH dehydrogenase subunit I [Nouelia insignis] gi|168188331|gb|ACA14554.1| NADH dehydrogenase subunit I [Oldenburgia grandis] gi|168188344|gb|ACA14560.1| NADH dehydrogenase subunit I [Pertya scandens] gi|168188346|gb|ACA14561.1| NADH dehydrogenase subunit I [Platycarphella carlinoides] gi|168188350|gb|ACA14563.1| NADH dehydrogenase subunit I [Pluchea carolinensis] gi|168188354|gb|ACA14565.1| NADH dehydrogenase subunit I [Relhania calycina] gi|168188358|gb|ACA14567.1| NADH dehydrogenase subunit I [Scolymus maculatus] gi|168188360|gb|ACA14568.1| NADH dehydrogenase subunit I [Senecio polypodioides] gi|168188364|gb|ACA14570.1| NADH dehydrogenase subunit I [Stenopadus talaumifolius] gi|168188366|gb|ACA14571.1| NADH dehydrogenase subunit I [Stifftia chrysantha] gi|168188370|gb|ACA14573.1| NADH dehydrogenase subunit I [Stomatochaeta condensata] gi|168188372|gb|ACA14574.1| NADH dehydrogenase subunit I [Syncarpha vestita] gi|168188374|gb|ACA14575.1| NADH dehydrogenase subunit I [Tarchonanthus camphoratus] gi|168188380|gb|ACA14578.1| NADH dehydrogenase subunit I [Ursinia speciosa] gi|168188383|gb|ACA14579.1| NADH dehydrogenase subunit I [Wunderlichia mirabilis] gi|170665735|gb|ACB29407.1| NADH dehydrogenase subunit I [Psacalium paucicapitatum] Length = 166 Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|75300877|sp|Q8HVR9|NDHI_GUATU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|24460590|gb|AAN61735.1| NADH dehydrogenase subunit I [Guardiola tulocarpus] Length = 166 Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|168188268|gb|ACA14523.1| NADH dehydrogenase subunit I [Doniophyton anomalum] Length = 166 Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|167391856|ref|YP_001671736.1| NADH dehydrogenase subunit I [Carica papaya] gi|166344183|gb|ABY86833.1| NADH-plastoquinone oxidoreductase subunit I [Carica papaya] Length = 167 Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFIITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 NLPVVDWKFETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|170784788|ref|YP_001718704.1| NADH-plastoquinone oxidoreductase subunit I [Trachelium caeruleum] gi|156598753|gb|ABU85631.1| NADH-plastoquinone oxidoreductase subunit I [Trachelium caeruleum] gi|157267536|gb|ABV26529.1| NADH-plastoquinone oxidoreductase subunit I [Trachelium caeruleum] Length = 167 Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLMTSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R +L Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHQLN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|75300888|sp|Q8HVT0|NDHI_ENYSE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|24460568|gb|AAN61724.1| NADH dehydrogenase subunit I [Enydra sessilis] Length = 166 Score = 99.8 bits (247), Expect = 1e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|168188284|gb|ACA14531.1| NADH dehydrogenase subunit I [Gamochaeta pensylvanica] Length = 166 Score = 99.4 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|75300803|sp|Q8HVJ5|NDHI_BAHTO RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|24460738|gb|AAN61809.1| NADH dehydrogenase subunit I [Bahiopsis tomentosa] Length = 166 Score = 99.4 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|75300814|sp|Q8HVK6|NDHI_SYNNO RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300863|sp|Q8HVQ5|NDHI_LASMA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300898|sp|Q8HVU0|NDHI_DELBI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300899|sp|Q8HVU1|NDHI_DAMCA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300908|sp|Q8HVV0|NDHI_CALVA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|24460527|gb|AAN61704.1| NADH dehydrogenase subunit I [Calyptocarpus vialis] gi|24460545|gb|AAN61713.1| NADH dehydrogenase subunit I [Damnxanthodium calvum] gi|24460547|gb|AAN61714.1| NADH dehydrogenase subunit I [Delilia biflora] gi|24460618|gb|AAN61749.1| NADH dehydrogenase subunit I [Lasianthaea macrocephala] gi|24460716|gb|AAN61798.1| NADH dehydrogenase subunit I [Synedrella nodiflora] Length = 166 Score = 99.4 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|114107187|ref|YP_740171.1| NADH-plastoquinone oxidoreductase subunit I [Daucus carota] gi|122233825|sp|Q0G9Q8|NDHI_DAUCA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|113200962|gb|ABI32478.1| NADH-plastoquinone oxidoreductase subunit I [Daucus carota] Length = 164 Score = 99.4 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHASRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLEKDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|75300906|sp|Q8HVU8|NDHI_CHAPD RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|24460531|gb|AAN61706.1| NADH dehydrogenase subunit I [Chaetymenia peduncularis] Length = 166 Score = 99.4 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|197131392|gb|ACH47214.1| NADH-plastoquinone oxidoreductase subunit I [Pelargonium cotyledonis] Length = 173 Score = 99.4 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 39/126 (30%), Positives = 59/126 (46%), Gaps = 5/126 (3%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSLMITLSHANRFPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKFETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YDKERL 141 Y++ L Sbjct: 137 YNQTAL 142 >gi|94502542|ref|YP_588169.1| NADH dehydrogenase subunit I [Helianthus annuus] gi|75300797|sp|Q8HVI9|NDHI_ZINJU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300799|sp|Q8HVJ1|NDHI_ZALME RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300800|sp|Q8HVJ2|NDHI_ARNDE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300802|sp|Q8HVJ4|NDHI_VILAC RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300804|sp|Q8HVJ6|NDHI_VERJA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300806|sp|Q8HVJ8|NDHI_VARMX RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300811|sp|Q8HVK3|NDHI_TETRE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300812|sp|Q8HVK4|NDHI_TETOR RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300813|sp|Q8HVK5|NDHI_TARER RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300817|sp|Q8HVK9|NDHI_SQUKU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300818|sp|Q8HVL0|NDHI_SPIUR RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300820|sp|Q8HVL2|NDHI_SMAMI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300823|sp|Q8HVL5|NDHI_RUMPE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300824|sp|Q8HVL6|NDHI_RUDHI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300825|sp|Q8HVL7|NDHI_ROJSU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300828|sp|Q8HVM0|NDHI_RATCO RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300834|sp|Q8HVM6|NDHI_PODEM RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300837|sp|Q8HVM9|NDHI_PEUSC RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300841|sp|Q8HVN3|NDHI_PERCD RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300848|sp|Q8HVP0|NDHI_NEULO RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300849|sp|Q8HVP1|NDHI_MONRV RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300850|sp|Q8HVP2|NDHI_MONGR RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300851|sp|Q8HVP3|NDHI_MONPA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300856|sp|Q8HVP8|NDHI_MADSA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300864|sp|Q8HVQ6|NDHI_LAGRA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300865|sp|Q8HVQ7|NDHI_KINPA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300869|sp|Q8HVR1|NDHI_IDIQU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300870|sp|Q8HVR2|NDHI_ICHTE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300875|sp|Q8HVR7|NDHI_HELAN RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300878|sp|Q8HVS0|NDHI_GRERE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300879|sp|Q8HVS1|NDHI_GALQU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300880|sp|Q8HVS2|NDHI_GALPT RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300881|sp|Q8HVS3|NDHI_FLOPE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300882|sp|Q8HVS4|NDHI_FLARA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300883|sp|Q8HVS5|NDHI_EUTPA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300886|sp|Q8HVS8|NDHI_CONNE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300892|sp|Q8HVT4|NDHI_DYSTE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300893|sp|Q8HVT5|NDHI_DYSMI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300894|sp|Q8HVT6|NDHI_DUGME RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300897|sp|Q8HVT9|NDHI_DESFU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300900|sp|Q8HVU2|NDHI_DAHCO RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300901|sp|Q8HVU3|NDHI_CYMVE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300904|sp|Q8HVU6|NDHI_CHRHE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300911|sp|Q8HVV3|NDHI_BEBJU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300914|sp|Q8HVV6|NDHI_ARNMO RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|24460507|gb|AAN61694.1| NADH dehydrogenase subunit I [Alloispermum scabrifolium] gi|24460509|gb|AAN61695.1| NADH dehydrogenase subunit I [Amblyopappus pusillus] gi|24460515|gb|AAN61698.1| NADH dehydrogenase subunit I [Arnica mollis] gi|24460521|gb|AAN61701.1| NADH dehydrogenase subunit I [Bebbia juncea] gi|24460535|gb|AAN61708.1| NADH dehydrogenase subunit I [Chromolepis heterophylla] gi|24460541|gb|AAN61711.1| NADH dehydrogenase subunit I [Cymophora venezuelensis] gi|24460543|gb|AAN61712.1| NADH dehydrogenase subunit I [Dahlia coccinea] gi|24460549|gb|AAN61715.1| NADH dehydrogenase subunit I [Desmanthodium fruticosum] gi|24460555|gb|AAN61718.1| NADH dehydrogenase subunit I [Dugesia mexicana] gi|24460557|gb|AAN61719.1| NADH dehydrogenase subunit I [Dyscritothamnus mirandae] gi|24460559|gb|AAN61720.1| NADH dehydrogenase subunit I [Thymophylla tenuiloba] gi|24460572|gb|AAN61726.1| NADH dehydrogenase subunit I [Constancea nevinii] gi|24460578|gb|AAN61729.1| NADH dehydrogenase subunit I [Eutetras palmeri] gi|24460580|gb|AAN61730.1| NADH dehydrogenase subunit I [Flaveria ramosissima] gi|24460582|gb|AAN61731.1| NADH dehydrogenase subunit I [Florestina pedata] gi|24460584|gb|AAN61732.1| NADH dehydrogenase subunit I [Galeana pratensis] gi|24460586|gb|AAN61733.1| NADH dehydrogenase subunit I [Galinsoga quadriradiata] gi|24460588|gb|AAN61734.1| NADH dehydrogenase subunit I [Greenmaniella resinosa] gi|24460594|gb|AAN61737.1| NADH dehydrogenase subunit I [Helianthus annuus] gi|24460604|gb|AAN61742.1| NADH dehydrogenase subunit I [Ichthyothere terminalis] gi|24460606|gb|AAN61743.1| NADH dehydrogenase subunit I [Idiopappus quitensis] gi|24460614|gb|AAN61747.1| NADH dehydrogenase subunit I [Kingianthus paradoxus] gi|24460616|gb|AAN61748.1| NADH dehydrogenase subunit I [Lagophylla ramosissima] gi|24460632|gb|AAN61756.1| NADH dehydrogenase subunit I [Madia sativa] gi|24460642|gb|AAN61761.1| NADH dehydrogenase subunit I [Monactis pallatangensis] gi|24460644|gb|AAN61762.1| NADH dehydrogenase subunit I [Monolopia gracilens] gi|24460646|gb|AAN61763.1| NADH dehydrogenase subunit I [Montanoa revealii] gi|24460648|gb|AAN61764.1| NADH dehydrogenase subunit I [Neurolaena lobata] gi|24460662|gb|AAN61771.1| NADH dehydrogenase subunit I [Pericome caudata] gi|24460670|gb|AAN61775.1| NADH dehydrogenase subunit I [Peucephyllum schottii] gi|24460676|gb|AAN61778.1| NADH dehydrogenase subunit I [Podachaenium eminens] gi|24460688|gb|AAN61784.1| NADH dehydrogenase subunit I [Ratibida columnifera] gi|24460694|gb|AAN61787.1| NADH dehydrogenase subunit I [Rojasianthe superba] gi|24460696|gb|AAN61788.1| NADH dehydrogenase subunit I [Rudbeckia hirta] gi|24460698|gb|AAN61789.1| NADH dehydrogenase subunit I [Rumfordia penninervis] gi|24460704|gb|AAN61792.1| NADH dehydrogenase subunit I [Smallanthus microcephalus] gi|24460708|gb|AAN61794.1| NADH dehydrogenase subunit I [Spilanthes urens] gi|24460710|gb|AAN61795.1| NADH dehydrogenase subunit I [Squamopappus skutchii] gi|24460718|gb|AAN61799.1| NADH dehydrogenase subunit I [Tagetes erecta] gi|24460720|gb|AAN61800.1| NADH dehydrogenase subunit I [Tetrachyron orizabensis] gi|24460722|gb|AAN61801.1| NADH dehydrogenase subunit I [Tetragonotheca repanda] gi|24460732|gb|AAN61806.1| NADH dehydrogenase subunit I [Varilla mexicana] gi|24460736|gb|AAN61808.1| NADH dehydrogenase subunit I [Verbesina jacksonii] gi|24460740|gb|AAN61810.1| NADH dehydrogenase subunit I [Villanova achilleoides] gi|24460744|gb|AAN61812.1| NADH dehydrogenase subunit I [Arnica dealbata] gi|24460746|gb|AAN61813.1| NADH dehydrogenase subunit I [Zaluzania megacephala] gi|24460750|gb|AAN61815.1| NADH dehydrogenase subunit I [Zinnia juniperifolia] gi|88656946|gb|ABD47197.1| NADH-plastoquinone oxidoreductase subunit I [Helianthus annuus] Length = 166 Score = 99.4 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|75300916|sp|Q8HVV8|NDHI_AMBTR RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|24460511|gb|AAN61696.1| NADH dehydrogenase subunit I [Ambrosia trifida] Length = 166 Score = 99.4 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|168188297|gb|ACA14537.1| NADH dehydrogenase subunit I [Hecastocleis shockleyi] Length = 166 Score = 99.4 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|75300891|sp|Q8HVT3|NDHI_EATNI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|24460561|gb|AAN61721.1| NADH dehydrogenase subunit I [Eatonella nivea] Length = 166 Score = 99.4 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|75300915|sp|Q8HVV7|NDHI_APHJA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|24460513|gb|AAN61697.1| NADH dehydrogenase subunit I [Aphanactis jamesoniana] Length = 166 Score = 99.4 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|153004163|ref|YP_001378488.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|166918784|sp|A7H9V8|NUOI_ANADF RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|152027736|gb|ABS25504.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Anaeromyxobacter sp. Fw109-5] Length = 238 Score = 99.4 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 49/181 (27%), Positives = 73/181 (40%), Gaps = 31/181 (17%) Query: 11 LFLKEFVGAFFLCLRYFFKA-----------------------KTTINYPFEKGSTSPRF 47 ++ E + ++F + T+ YP E+ P + Sbjct: 16 MYFPEIIRGIGAVTKHFLRNLFFTRDKNPDILERRRGEFGWADNVTLQYPEERAPYPPGY 75 Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT-RRTVRYDIDMIKCIYC 106 RG H L +G RC+AC +C CPAQ I IE+G D + V++ ID ++CI C Sbjct: 76 RGLHRLVPREDGRARCVACYMCATACPAQCIYIEAGEYADDPIEKYPVKFVIDELRCIVC 135 Query: 107 GLCQEACPVDAIVE-GPNFEFATETRQELYYDKERLLNN------GDRWESEIVRNIVTD 159 G C EACP DAI + R +D++RLL D W +I + Sbjct: 136 GFCVEACPKDAIRMDSGEHTPPSYERGAQIWDEKRLLRGPPVSYQYDPWLRRGSPSIPAE 195 Query: 160 S 160 Sbjct: 196 K 196 >gi|148657102|ref|YP_001277307.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Roseiflexus sp. RS-1] gi|148569212|gb|ABQ91357.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Roseiflexus sp. RS-1] Length = 440 Score = 99.4 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 56/151 (37%), Gaps = 16/151 (10%) Query: 16 FVGAFFLCLRYF-------FKAK------TTINYPFEKGSTSPRFRGEHALRRYPN-GEE 61 + + R+F + T+ YP E+ FR L G E Sbjct: 35 LLTGLDVVFRHFRDALTRKLEKPSQQTGVFTVQYPEERLKLPEAFRNFPILLYDDETGHE 94 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVR--YDIDMIKCIYCGLCQEACPVDAIV 119 C +C C+ ICP Q I + G + I+ C+ CGLC E CP DAI Sbjct: 95 LCTSCFQCQRICPPQVIHMTQARDPATGKAVPAVAEFLIEYDACMSCGLCAEVCPFDAIK 154 Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWES 150 FEF+T+ L +K L +E Sbjct: 155 MDHEFEFSTDVHGGLTINKAGLNRPISYYEK 185 >gi|75300847|sp|Q8HVN9|NDHI_OBLMI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|24460650|gb|AAN61765.1| NADH dehydrogenase subunit I [Oblivia mikanioides] Length = 166 Score = 99.4 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|115502273|sp|Q8HVK0|NDHI_TRIBB RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|24460726|gb|AAN61803.1| NADH dehydrogenase subunit I [Trichocoryne connata] Length = 166 Score = 99.4 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 40/122 (32%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ H +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETHIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|239980101|ref|ZP_04702625.1| NADH dehydrogenase I chain I [Streptomyces albus J1074] gi|291451955|ref|ZP_06591345.1| NADH-quinone oxidoreductase subunit I 2 [Streptomyces albus J1074] gi|291354904|gb|EFE81806.1| NADH-quinone oxidoreductase subunit I 2 [Streptomyces albus J1074] Length = 224 Score = 99.4 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 41/137 (29%), Positives = 56/137 (40%), Gaps = 14/137 (10%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + LR K T YP + PR RG L EE C C LC C Sbjct: 15 SGLAKGLAVTLRTMTKKTVTAQYPETQPDLPPRTRGVIGLF-----EENCTVCMLCAREC 69 Query: 74 PAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 P I I+S R+ ID C+YCG+C E CP DA+ P F Sbjct: 70 PDWCIYIDSHKETVPPAAPGGRERSRNVLDRFAIDFSLCMYCGICIEVCPFDALFWSPEF 129 Query: 125 EFATETRQELYYDKERL 141 E+A ++L +++++L Sbjct: 130 EYAETDIRDLTHERDKL 146 >gi|24460654|gb|AAN61767.1| NADH dehydrogenase subunit I [Oxypappus scaber] Length = 166 Score = 99.4 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|75300921|sp|Q8HVW3|NDHI_ACAAU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|24460501|gb|AAN61691.1| NADH dehydrogenase subunit I [Acanthospermum australe] Length = 166 Score = 99.4 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFTITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|295837075|ref|ZP_06824008.1| NADH-quinone oxidoreductase subunit I 2 [Streptomyces sp. SPB74] gi|295826349|gb|EDY44115.2| NADH-quinone oxidoreductase subunit I 2 [Streptomyces sp. SPB74] Length = 208 Score = 99.4 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 40/139 (28%), Positives = 54/139 (38%), Gaps = 14/139 (10%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + LR + T YP PR RG L EE C C LC C Sbjct: 7 TGLAKGLAVTLRTMTRKSVTAQYPDTLPPLPPRSRGVIGLF-----EENCTVCMLCAREC 61 Query: 74 PAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 P I I+S R+ ID C+YCG+C E CP DA+ P F Sbjct: 62 PDWCIYIDSHKETVPPAAPGGRERSRNVLDRFAIDFSLCMYCGICIEVCPFDALFWSPEF 121 Query: 125 EFATETRQELYYDKERLLN 143 E+A +L +++++L Sbjct: 122 EYAETDVHDLTHERDKLRE 140 >gi|114329801|ref|YP_740619.1| NADH-plastoquinone oxidoreductase subunit I [Platanus occidentalis] gi|122165989|sp|Q09FZ2|NDHI_PLAOC RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|114054439|gb|ABI49833.1| NADH-plastoquinone oxidoreductase subunit I [Platanus occidentalis] Length = 180 Score = 99.4 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 + +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVNWRLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|313199751|ref|YP_004021365.1| NADH-plastoquinone oxidoreductase subunit I [Theobroma cacao] gi|309321315|gb|ADO64858.1| NADH-plastoquinone oxidoreductase subunit I [Theobroma cacao] gi|328924832|gb|ADO64943.2| NADH-plastoquinone oxidoreductase subunit I [Theobroma cacao] Length = 167 Score = 99.4 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKFETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|168188255|gb|ACA14517.1| NADH dehydrogenase subunit I [Corymbium glabrum] Length = 166 Score = 99.4 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|75300884|sp|Q8HVS6|NDHI_COETI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|24460576|gb|AAN61728.1| NADH dehydrogenase subunit I [Coespeletia timotensis] Length = 166 Score = 99.4 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|33860719|ref|NP_892280.1| NADH dehydrogenase subunit I [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|81711989|sp|Q7TUH1|NDHI_PROMP RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName: Full=NAD(P)H dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I; Short=NDH-I gi|33633661|emb|CAE18618.1| putative NADH Dehydrogenase subunit [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 208 Score = 99.4 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 39/144 (27%), Positives = 62/144 (43%), Gaps = 13/144 (9%) Query: 1 MRIFRCNVSFLFLKEFVG-------AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL 53 M+ F V+ ++KE F + + + T+ YP+EK S R+RG Sbjct: 1 MKDFLQKVNS-YIKEAFSAGKYLYDGFTVTFDHLRRRPVTVQYPYEKLIPSERYRGRI-- 57 Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 ++CIAC++C +CP ++ + Y ID CI+CG C E C Sbjct: 58 ---HYEFDKCIACEVCVRVCPINLPVVDWVMNKETKKKELRNYSIDFGVCIFCGNCVEYC 114 Query: 114 PVDAIVEGPNFEFATETRQELYYD 137 P + + +E AT R L +D Sbjct: 115 PTNCLSMTEEYELATFDRHNLNFD 138 >gi|168188262|gb|ACA14520.1| NADH dehydrogenase subunit I [Dimorphotheca sinuata] Length = 166 Score = 99.4 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK T RFRG +CIAC++C +CP Sbjct: 22 IGQGFIITLSHANRLPVTIQYPYEKLITPERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|168188215|gb|ACA14497.1| NADH dehydrogenase subunit I [Adenocaulon bicolor] Length = 166 Score = 99.4 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|75300829|sp|Q8HVM1|NDHI_RAIAR RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|24460686|gb|AAN61783.1| NADH dehydrogenase subunit I [Raillardella argentea] Length = 166 Score = 99.4 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLENDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|75295815|sp|Q7I7Y4|NDHI_ZEXSE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300798|sp|Q8HVJ0|NDHI_WEDTE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300801|sp|Q8HVJ3|NDHI_TILBA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300810|sp|Q8HVK2|NDHI_SPHTR RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300819|sp|Q8HVL1|NDHI_PERMO RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300844|sp|Q8HVN6|NDHI_MELNV RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300853|sp|Q8HVP5|NDHI_LUNJA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300857|sp|Q8HVP9|NDHI_LIPIN RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300859|sp|Q8HVQ1|NDHI_ECLPR RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300895|sp|Q8HVT7|NDHI_DIMVE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300903|sp|Q8HVU5|NDHI_CLIAL RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|115502271|sp|Q8HVN7|NDHI_OXYSB RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|24460537|gb|AAN61709.1| NADH dehydrogenase subunit I [Clibadium alatum] gi|24460553|gb|AAN61717.1| NADH dehydrogenase subunit I [Dimerostemma vestitum] gi|24460626|gb|AAN61753.1| NADH dehydrogenase subunit I [Eclipta prostrata] gi|24460630|gb|AAN61755.1| NADH dehydrogenase subunit I [Lipochaeta integrifolia] gi|24460638|gb|AAN61759.1| NADH dehydrogenase subunit I [Lundellianthus jaliscensis] gi|24460656|gb|AAN61768.1| NADH dehydrogenase subunit I [Melanthera nivea] gi|24460668|gb|AAN61774.1| NADH dehydrogenase subunit I [Oyedaea verbesinoides] gi|24460706|gb|AAN61793.1| NADH dehydrogenase subunit I [Perymenium macrocephalum] gi|24460724|gb|AAN61802.1| NADH dehydrogenase subunit I [Sphagneticola trilobata] gi|24460742|gb|AAN61811.1| NADH dehydrogenase subunit I [Tilesia baccata] gi|24460748|gb|AAN61814.1| NADH dehydrogenase subunit I [Wedelia tegetis] gi|27533113|gb|AAO18347.1| NADH dehydrogenase subunit I [Zexmenia serrata] Length = 166 Score = 99.4 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|75300890|sp|Q8HVT2|NDHI_ENCCL RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|24460564|gb|AAN61722.1| NADH dehydrogenase subunit I [Encelia californica] Length = 166 Score = 99.4 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|161784247|ref|YP_001595563.1| NADH dehydrogenase 18kD subunit [Lemna minor] gi|88696825|gb|ABD48550.1| NADH dehydrogenase 18kD subunit [Lemna minor] Length = 174 Score = 99.4 bits (246), Expect = 1e-19, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFIITLSHANRLPVTIQYPYEKSITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + ++ + Y ID CI+CG C E CP + + +E + R EL Sbjct: 77 NLPVVDWRLETNIKKKQLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSAYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|75300833|sp|Q8HVM5|NDHI_POLCN RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|24460678|gb|AAN61779.1| NADH dehydrogenase subunit I [Polymnia canadensis] Length = 166 Score = 99.4 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|75300854|sp|Q8HVP6|NDHI_MELLU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|24460636|gb|AAN61758.1| NADH dehydrogenase subunit I [Melampodium leucanthum] Length = 166 Score = 99.4 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y Sbjct: 137 YT 138 >gi|168188223|gb|ACA14501.1| NADH dehydrogenase subunit I [Arctotis hirsuta] gi|168188301|gb|ACA14539.1| NADH dehydrogenase subunit I [Heterolepis aliena] Length = 166 Score = 99.4 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|81176305|ref|YP_398382.1| NADH dehydrogenase subunit I [Lactuca sativa] gi|110287699|sp|Q332S3|NDHI_LACSA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|78675223|dbj|BAE47649.1| NADH dehydrogenase subunit I [Lactuca sativa] gi|88657034|gb|ABD47284.1| NADH-plastoquinone oxidoreductase subunit I [Lactuca sativa] gi|168188209|gb|ACA14494.1| NADH dehydrogenase subunit I [Acourtia turbinata] gi|168188211|gb|ACA14495.1| NADH dehydrogenase subunit I [Richterago angustifolia] gi|168188217|gb|ACA14498.1| NADH dehydrogenase subunit I [Ainsliaea apiculata] gi|168188219|gb|ACA14499.1| NADH dehydrogenase subunit I [Ainsliaea macrocephala] gi|168188221|gb|ACA14500.1| NADH dehydrogenase subunit I [Aphyllocladus spartioides] gi|168188235|gb|ACA14507.1| NADH dehydrogenase subunit I [Brachylaena elliptica] gi|168188243|gb|ACA14511.1| NADH dehydrogenase subunit I [Chaetanthera pentacaenoides] gi|168188253|gb|ACA14516.1| NADH dehydrogenase subunit I [Cnicothamnus lorentzii] gi|168188288|gb|ACA14533.1| NADH dehydrogenase subunit I [Gochnatia hiriartiana] gi|168188294|gb|ACA14536.1| NADH dehydrogenase subunit I [Gundelia tournefortii] gi|168188305|gb|ACA14541.1| NADH dehydrogenase subunit I [Hyalis argentea] gi|168188307|gb|ACA14542.1| NADH dehydrogenase subunit I [Hyaloseris rubicunda] gi|168188319|gb|ACA14548.1| NADH dehydrogenase subunit I [Lophopappus cuneatus] gi|168188321|gb|ACA14549.1| NADH dehydrogenase subunit I [Lycoseris crocata] gi|168188327|gb|ACA14552.1| NADH dehydrogenase subunit I [Nassauvia pygmaea] gi|168188348|gb|ACA14562.1| NADH dehydrogenase subunit I [Plazia daphnoides] gi|168188352|gb|ACA14564.1| NADH dehydrogenase subunit I [Proustia cuneifolia] gi|168188362|gb|ACA14569.1| NADH dehydrogenase subunit I [Sonchus oleraceus] gi|168188368|gb|ACA14572.1| NADH dehydrogenase subunit I [Stokesia laevis] gi|168188376|gb|ACA14576.1| NADH dehydrogenase subunit I [Trichocline boecheri] gi|168188378|gb|ACA14577.1| NADH dehydrogenase subunit I [Trixis divaricata] gi|168188385|gb|ACA14580.1| NADH dehydrogenase subunit I [Youngia japonica] gi|223712684|gb|ACN22059.1| NADH dehydrogenase subunit I [Catamixis baccharoides] Length = 166 Score = 99.4 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|75300907|sp|Q8HVU9|NDHI_CHAST RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|24460529|gb|AAN61705.1| NADH dehydrogenase subunit I [Chaenactis santolinoides] Length = 166 Score = 99.4 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + T+ YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTVQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|48478735|ref|YP_024342.1| NADH dehydrogenase subunit I [Saccharum hybrid cultivar SP-80-3280] gi|50812598|ref|YP_054699.1| NADH dehydrogenase subunit I [Saccharum officinarum] gi|118614546|ref|YP_899461.1| NADH-plastoquinone oxidoreductase subunit I [Sorghum bicolor] gi|75290170|sp|Q6ENP3|NDHI_SACOF RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75291234|sp|Q6L3D6|NDHI_SACHY RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|125952749|sp|A1E9X8|NDHI_SORBI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|48478637|gb|AAT44657.1| NADH dehydrogenase subunit I [Saccharum hybrid cultivar SP80-3280] gi|49659582|dbj|BAD27363.1| NADH dehydrogenase 18kD subunit [Saccharum hybrid cultivar NCo 310] gi|118201180|gb|ABK79550.1| NADH-plastoquinone oxidoreductase subunit I [Sorghum bicolor] Length = 180 Score = 99.4 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + L + + TI+YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGLIITLSHTNRLPITIHYPYEKSITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ ++ + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPLVDWKFEKDIKRKQLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|297585412|ref|YP_003701192.1| NADH-quinone oxidoreductase, chain I [Bacillus selenitireducens MLS10] gi|297143869|gb|ADI00627.1| NADH-quinone oxidoreductase, chain I [Bacillus selenitireducens MLS10] Length = 285 Score = 99.4 bits (246), Expect = 2e-19, Method: Composition-based stats. Identities = 43/131 (32%), Positives = 57/131 (43%), Gaps = 7/131 (5%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + F + L YF K TI YP EK RFRG H E+CI C LC CP Sbjct: 4 LLKGFGVTLNYFRKKNLTIQYPEEKMVMPERFRGIHRFF-----PEKCIVCNLCVQACPT 58 Query: 76 QAITIESGPRCHDGTRRTV-RYDIDMIKCIYCGLCQEACPVDAIVEGPNFE-FATETRQE 133 IT+ + ++ + Y+ID CI C C E CP AIV ++ + R + Sbjct: 59 DVITLTGKKSEENPKKKVIDTYNIDFQGCILCDFCTEVCPTQAIVMTARYDNLSEYNRAD 118 Query: 134 LYYDKERLLNN 144 + D L N Sbjct: 119 HFKDINWLTAN 129 >gi|168188270|gb|ACA14524.1| NADH dehydrogenase subunit I [Duidaea pinifolia] gi|168188290|gb|ACA14534.1| NADH dehydrogenase subunit I [Gongylolepis benthamiana] Length = 166 Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 NLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|290489772|gb|ADD31293.1| NADH-plastoquinone oxidoreductase subunit I protein [Bulnesia arborea] Length = 164 Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKFENDIRKKRLFNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|290489756|gb|ADD31285.1| NADH-plastoquinone oxidoreductase subunit I protein [Ehretia acuminata] Length = 167 Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK S RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLIASERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ ++ + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKQLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|168188286|gb|ACA14532.1| NADH dehydrogenase subunit I [Gochnatia hypoleuca] Length = 166 Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLEIDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|28202228|ref|NP_777468.1| NADH dehydrogenase subunit I [Anthoceros formosae] gi|47117204|sp|Q85A84|NDHI_ANTFO RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|27807930|dbj|BAC55405.1| NADH dehydrogenase 18 kDa subunit [Anthoceros formosae] gi|27808104|dbj|BAC55505.1| NADH dehydrogenase 18 kDa subunit [Anthoceros formosae] Length = 183 Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK S RFRG +CIAC++C +CP Sbjct: 22 IGQGFIVTLDHMNRLPMTIQYPYEKLVPSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + ++ Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 NLPVVDWKFKKDIKKKQLKSYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|290489794|gb|ADD31304.1| NADH-plastoquinone oxidoreductase subunit I protein [Trochodendron aralioides] Length = 180 Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|168188342|gb|ACA14559.1| NADH dehydrogenase subunit I [Perezia purpurata] Length = 166 Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|168188325|gb|ACA14551.1| NADH dehydrogenase subunit I [Mutisia retrorsa] Length = 166 Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|110287696|sp|Q2QD37|NDHI_CUCSA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|74027152|gb|AAZ94702.1| NADH dehydrogenase 18 kDa subunit [Cucumis sativus] gi|115432854|gb|ABI97467.1| NADH-plastoquinone oxidoreductase subunit I [Cucumis sativus] gi|115498356|gb|ABI98798.1| NADH-plastoquinone oxidoreductase subunit I [Cucumis sativus] Length = 160 Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK S RFRG +CIAC++C +CP Sbjct: 22 IGQGFVITLSHANRLPVTIQYPYEKLIASERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|323366668|gb|ADX43803.1| NADH dehydrogenase subunit I [Ageratina luciae-brauniae] Length = 166 Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|75300805|sp|Q8HVJ7|NDHI_VENCA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300831|sp|Q8HVM3|NDHI_PSEAR RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300835|sp|Q8HVM7|NDHI_PHIZI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300846|sp|Q8HVN8|NDHI_OTESC RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300858|sp|Q8HVQ0|NDHI_LOXSI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300861|sp|Q8HVQ3|NDHI_MONCO RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300862|sp|Q8HVQ4|NDHI_LAYHE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300866|sp|Q8HVQ8|NDHI_JAUCA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300867|sp|Q8HVQ9|NDHI_JAEHI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300872|sp|Q8HVR4|NDHI_HYMFF RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300885|sp|Q8HVS7|NDHI_ERICN RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300887|sp|Q8HVS9|NDHI_ERIST RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300889|sp|Q8HVT1|NDHI_ENGPE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|75300920|sp|Q8HVW2|NDHI_ACMRA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|24460503|gb|AAN61692.1| NADH dehydrogenase subunit I [Acmella radicans] gi|24460505|gb|AAN61693.1| NADH dehydrogenase subunit I [Alepidocline annua] gi|24460566|gb|AAN61723.1| NADH dehydrogenase subunit I [Engelmannia peristenia] gi|24460570|gb|AAN61725.1| NADH dehydrogenase subunit I [Eriophyllum staechadifolium] gi|24460574|gb|AAN61727.1| NADH dehydrogenase subunit I [Eriophyllum congdonii] gi|24460600|gb|AAN61740.1| NADH dehydrogenase subunit I [Hymenopappus filifolius var. filifolius] gi|24460610|gb|AAN61745.1| NADH dehydrogenase subunit I [Jaegeria hirta] gi|24460612|gb|AAN61746.1| NADH dehydrogenase subunit I [Jaumea carnosa] gi|24460620|gb|AAN61750.1| NADH dehydrogenase subunit I [Layia heterotricha] gi|24460622|gb|AAN61751.1| NADH dehydrogenase subunit I [Monolopia congdonii] gi|24460628|gb|AAN61754.1| NADH dehydrogenase subunit I [Loxothysanus sinuatus] gi|24460652|gb|AAN61766.1| NADH dehydrogenase subunit I [Oteiza scandens] gi|24460674|gb|AAN61777.1| NADH dehydrogenase subunit I [Philactis zinnioides] gi|24460682|gb|AAN61781.1| NADH dehydrogenase subunit I [Pseudoclappia arenaria] gi|24460734|gb|AAN61807.1| NADH dehydrogenase subunit I [Venegasia carpesioides] Length = 166 Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|122894039|ref|YP_001004235.1| NADH-plastoquinone oxidoreductase subunit I [Ranunculus macranthus] gi|156632627|sp|A1XGT7|NDHI_RANMC RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|85540853|gb|ABC70805.1| NADH-plastoquinone oxidoreductase subunit I [Ranunculus macranthus] Length = 180 Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSLMITLSHANRLPVTIQYPYEKVITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + +R + Y ID CI+CG C E CP + + +E + R EL Sbjct: 77 DLPVVDWKLETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSAYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|121720668|ref|YP_001001588.1| NADH-plastoquinone oxidoreductase subunit I [Nuphar advena] gi|156632618|sp|A1XG09|NDHI_NUPAD RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|84682259|gb|ABC60513.1| NADH-plastoquinone oxidoreductase subunit I [Nuphar advena] Length = 179 Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFMITLSHANRLPVTIQYPYEKSITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWRLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|168188251|gb|ACA14515.1| NADH dehydrogenase subunit I [Chuquiraga spinosa] Length = 166 Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPIVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|189162325|ref|YP_001936571.1| NADH dehydrogenase subunit I [Fagopyrum esculentum subsp. ancestrale] gi|166065411|gb|ABY79786.1| NADH dehydrogenase subunit I [Fagopyrum esculentum subsp. ancestrale] Length = 170 Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFLITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E + R EL Sbjct: 77 DLPVVDWKLETGIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSMYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|168188340|gb|ACA14558.1| NADH dehydrogenase subunit I [Pasaccardoa grantii] Length = 166 Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYEISTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|168188335|gb|ACA14556.1| NADH dehydrogenase subunit I [Onoseris hastata] Length = 166 Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKFETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|68164858|ref|YP_247654.1| NADH dehydrogenase subunit I [Cucumis sativus] gi|67511453|emb|CAJ00813.1| NADH dehydrogenase subunit I [Cucumis sativus] Length = 160 Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 55/122 (45%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK S RFRG +CIAC+ C +CP Sbjct: 22 IGQGFVITLSHANRLPVTIQYPYEKLIASERFRGRIHFEFD-----KCIACEACVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|168188356|gb|ACA14566.1| NADH dehydrogenase subunit I [Richterago amplexifolia] Length = 166 Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|260677471|ref|YP_003208253.1| NADH-plastoquinone oxidoreductase subunit I [Coix lacryma-jobi] gi|209361409|gb|ACI43324.1| NADH-plastoquinone oxidoreductase subunit I [Coix lacryma-jobi] Length = 180 Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + L + + TI+YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGLIITLSHTNRLPITIHYPYEKSITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ ++ + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPLVDWRFEKDIKRKQLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|290489792|gb|ADD31303.1| NADH-plastoquinone oxidoreductase subunit I protein [Staphylea colchica] Length = 179 Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYNRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|75300827|sp|Q8HVL9|NDHI_RIEOB RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|24460690|gb|AAN61785.1| NADH dehydrogenase subunit I [Riencourtia oblongifolia] Length = 166 Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|75300842|sp|Q8HVN4|NDHI_PARHY RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|24460660|gb|AAN61770.1| NADH dehydrogenase subunit I [Parthenium hysterophorus] Length = 166 Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|75300839|sp|Q8HVN1|NDHI_PEROV RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|24460666|gb|AAN61773.1| NADH dehydrogenase subunit I [Perymeniopsis ovalifolia] Length = 166 Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGHCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|75300815|sp|Q8HVK7|NDHI_STERE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|24460714|gb|AAN61797.1| NADH dehydrogenase subunit I [Stevia rebaudiana] Length = 166 Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFIITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|75300826|sp|Q8HVL8|NDHI_RENSL RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|24460692|gb|AAN61786.1| NADH dehydrogenase subunit I [Rensonia salvadorica] Length = 166 Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|75300843|sp|Q8HVN5|NDHI_PALAR RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|24460658|gb|AAN61769.1| NADH dehydrogenase subunit I [Palafoxia arida] Length = 166 Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFIITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|183217791|ref|YP_001837411.1| NADH dehydrogenase subunit I [Guizotia abyssinica] gi|179366306|gb|ACB86577.1| NADH-plastoquinone oxidoreductase subunit I [Guizotia abyssinica] Length = 166 Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTFDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|134299887|ref|YP_001113383.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfotomaculum reducens MI-1] gi|134052587|gb|ABO50558.1| NADH dehydrogenase subunit I [Desulfotomaculum reducens MI-1] Length = 165 Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 40/120 (33%), Positives = 56/120 (46%), Gaps = 7/120 (5%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 K + + +++FFK K T+ YP + RF G +CIAC C C Sbjct: 4 KGLIKGLGVTIKHFFKPKVTVQYPEVRLPIPERFFGRPQFFYD-----KCIACNQCVNAC 58 Query: 74 PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 P I +E+ D + RYD D C++CG+CQEACP DAI +FE R + Sbjct: 59 PNNVIKLETD--TVDKKKVVTRYDFDQQYCMFCGMCQEACPKDAIKFSDDFELTQYNRPD 116 >gi|34500968|ref|NP_904153.1| NADH dehydrogenase subunit I [Amborella trichopoda] gi|75294671|sp|Q70XW0|NDHI_AMBTC RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|34481683|emb|CAD45160.1| NADH dehydrogenase 18kD subunit [Amborella trichopoda] Length = 180 Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFMITLSHANRLPVTIQYPYEKSITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWRFETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|91214191|ref|YP_538814.1| NADH dehydrogenase subunit I [Glycine max] gi|110287707|sp|Q2PMN6|NDHI_SOYBN RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|83595792|gb|ABC25173.1| NADH-plastoquinone oxidoreductase subunit I [Glycine max] Length = 163 Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK +S RFRG +CIAC++C +CP Sbjct: 22 IGQGFTITLSHANRLPVTIQYPYEKIISSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ ++ + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKQLLNYSIDFGICIFCGNCIEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|50346839|ref|YP_053210.1| NADH dehydrogenase subunit I [Nymphaea alba] gi|75290268|sp|Q6EVZ6|NDHI_NYMAL RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|50250384|emb|CAF28650.1| NADH dehydrogenase 18kD subunit [Nymphaea alba] Length = 179 Score = 99.0 bits (245), Expect = 2e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFMITLSHANRLPVTIQYPYEKSITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWRLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|325280127|ref|YP_004252669.1| putative NADH dehydrogenase I subunit I [Odoribacter splanchnicus DSM 20712] gi|324311936|gb|ADY32489.1| putative NADH dehydrogenase I subunit I [Odoribacter splanchnicus DSM 20712] Length = 158 Score = 98.6 bits (244), Expect = 2e-19, Method: Composition-based stats. Identities = 53/158 (33%), Positives = 71/158 (44%), Gaps = 10/158 (6%) Query: 1 MRIFRCNVSFLF--LKEFVGAFFLCLRYFFKAKTTINYPFEK--GSTSPRFRGEHALRRY 56 MR + S F L + + LR FF KTT YP + RFRGE + Sbjct: 1 MRSTQEYFSSFFNGLGSLLKGMSITLREFFTPKTTEKYPENRATLKMFDRFRGELTMPHN 60 Query: 57 PNGEERCIACKLCEAICPAQAITIESGP---RCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 E C+AC +CE CP I +ES + VRY D C+YC LC +C Sbjct: 61 ERNEHHCVACGICEMNCPNDTIRVESEMVTTEDGKKKKVLVRYLYDHGSCLYCQLCVRSC 120 Query: 114 PVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 P AI P +E A TR++L +L + G R E++ Sbjct: 121 PHQAITFIPTYEHAVFTREKLVL---QLNHEGSRLETK 155 >gi|108773204|ref|YP_635802.1| NADH dehydrogenase subunit I [Chara vulgaris] gi|115502270|sp|Q1ACE5|NDHI_CHAVU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|77157860|gb|ABA61901.1| 18 kDa subunit of NADH-plastoquinone oxidoreductase [Chara vulgaris] Length = 159 Score = 98.6 bits (244), Expect = 2e-19, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 56/122 (45%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + ++ T+ YP+EK TS RFRG +CI C++C +CP Sbjct: 22 IGQGFIVTLNHINRSAITVQYPYEKLITSERFRGRIHFEFD-----KCIVCEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + ++ Y ID CI+CG C E CP + + +E + R EL Sbjct: 77 NLPVVDWNFQQDIRKKKLKNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSVYDRHELN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|290489762|gb|ADD31288.1| NADH-plastoquinone oxidoreductase subunit I protein [Meliosma aff. cuneifolia Moore 333] Length = 180 Score = 98.6 bits (244), Expect = 2e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFMITLSHTNRLPITIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWRLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|75300821|sp|Q8HVL3|NDHI_SILPE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|24460702|gb|AAN61791.1| NADH dehydrogenase subunit I [Silphium perfoliatum] Length = 166 Score = 98.6 bits (244), Expect = 2e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|75755713|ref|YP_319817.1| NADH dehydrogenase subunit I [Acorus calamus] gi|161622363|ref|YP_001586235.1| NADH dehydrogenase subunit I [Acorus americanus] gi|110287694|sp|Q3V4Y0|NDHI_ACOCL RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|74381763|emb|CAI53848.1| NADH dehydrogenase 18kD subunit [Acorus calamus] gi|156573621|gb|ABU85146.1| NADH-plastoquinone oxidoreductase subunit I [Acorus americanus] gi|160369906|gb|ABX38797.1| NADH-plastoquinone oxidoreductase subunit I [Acorus americanus] Length = 179 Score = 98.6 bits (244), Expect = 2e-19, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ ++ + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWRLDTDVRKKQLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|297201679|ref|ZP_06919076.1| NADH-plastoquinone oxidoreductase, I subunit [Streptomyces sviceus ATCC 29083] gi|197710948|gb|EDY54982.1| NADH-plastoquinone oxidoreductase, I subunit [Streptomyces sviceus ATCC 29083] Length = 189 Score = 98.6 bits (244), Expect = 2e-19, Method: Composition-based stats. Identities = 42/139 (30%), Positives = 56/139 (40%), Gaps = 14/139 (10%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + LR K T YP + PR RG L EE C C LC C Sbjct: 7 SGLAKGLAVTLRTMTKKTVTEQYPDAQPDLPPRTRGVIGLF-----EENCTVCMLCAREC 61 Query: 74 PAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 P I I+S R+ ID C+YCG+C E CP DA+ P F Sbjct: 62 PDWCIYIDSHKETVPAAAPGGRERSRNVLDRFAIDFSLCMYCGICIEVCPFDALFWSPEF 121 Query: 125 EFATETRQELYYDKERLLN 143 E+A +EL +++++L Sbjct: 122 EYAETDIRELTHERDKLRE 140 >gi|296274184|ref|YP_003656815.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Arcobacter nitrofigilis DSM 7299] gi|296098358|gb|ADG94308.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Arcobacter nitrofigilis DSM 7299] Length = 170 Score = 98.6 bits (244), Expect = 2e-19, Method: Composition-based stats. Identities = 55/160 (34%), Positives = 84/160 (52%), Gaps = 17/160 (10%) Query: 11 LFLKEFVGAFFLCLRYFFKAK------TTINYPFEKGS---TSPRFRGEHALRRYPNGEE 61 LF+ +G L +F K TTI YP E+ + T+PR+RG H L ++ + E Sbjct: 17 LFIPAIMGGMKTTLGHFTKNLKDVSNLTTIQYPEEQPTDVATNPRYRGVHRLTKWEDESE 76 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDG-TRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 +C+AC +C CPA+ I I++ R +R + ID+++C+YCG C EACP DAI Sbjct: 77 KCVACYMCATACPAECIFIDAEERFDGKAEKRPKEFKIDLLECVYCGYCVEACPCDAIRM 136 Query: 121 -GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 F +R+E DK+ L+NN E +++ D Sbjct: 137 DTGILSFTGSSREEFVVDKKYLMNN------ERAKDLSND 170 >gi|168188260|gb|ACA14519.1| NADH dehydrogenase subunit I [Dicoma sp. JLP-2008] Length = 166 Score = 98.6 bits (244), Expect = 2e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYEISTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|156598600|gb|ABU85557.1| NADH-plastoquinone oxidoreductase subunit I [Scaevola aemula] Length = 160 Score = 98.6 bits (244), Expect = 2e-19, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHVNRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ ++ + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 NLPVVDWKLETEIRKKQLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|322369190|ref|ZP_08043755.1| NADH-quinone oxidoreductase, chain I [Haladaptatus paucihalophilus DX253] gi|320550922|gb|EFW92571.1| NADH-quinone oxidoreductase, chain I [Haladaptatus paucihalophilus DX253] Length = 153 Score = 98.6 bits (244), Expect = 2e-19, Method: Composition-based stats. Identities = 46/130 (35%), Positives = 69/130 (53%), Gaps = 11/130 (8%) Query: 13 LKEFVGAFFLCLRY-FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71 + + + +++ T+ YP SPRFRG H +ERCI C+ CE Sbjct: 1 MIGLLKSMATTMKHALGGTTFTVEYPDVAPEVSPRFRGIHKF-----SQERCIWCRQCEN 55 Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 +CP I I + R +Y++ + +CIYC LC+E CPVDAI+ NFEF +T+ Sbjct: 56 VCPNDTIQIVQDDQ-----RNGEQYNLHVGQCIYCRLCEEVCPVDAILLTQNFEFTGDTK 110 Query: 132 QELYYDKERL 141 +L Y+KE+L Sbjct: 111 DDLVYNKEQL 120 >gi|159901495|ref|YP_001547742.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Herpetosiphon aurantiacus ATCC 23779] gi|159894534|gb|ABX07614.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Herpetosiphon aurantiacus ATCC 23779] Length = 330 Score = 98.6 bits (244), Expect = 2e-19, Method: Composition-based stats. Identities = 40/150 (26%), Positives = 55/150 (36%), Gaps = 17/150 (11%) Query: 18 GAFFLCLRYF----FKAK----------TTINYPFEKGSTSPRFRGEHALRRYP-NGEER 62 + R F F + YP E+ +R L G E Sbjct: 29 KGLGIVFRKFRKALFGKPNSDRADTEGQFNVQYPEERLVLPEAYRNMPILLYDDATGHEL 88 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTV--RYDIDMIKCIYCGLCQEACPVDAIVE 120 C +C CE ICP Q I I G + ++ C+ CG C E CP DAI Sbjct: 89 CTSCFQCERICPPQVIHITQAKDPATGKPVPAAANFVLEYDTCMSCGYCAEVCPFDAIKM 148 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWES 150 +FE +T EL + +RLL +E+ Sbjct: 149 DHDFELSTGNHPELDVNYDRLLRPISYYEA 178 >gi|114107100|ref|YP_740256.1| NADH-plastoquinone oxidoreductase subunit I [Liriodendron tulipifera] gi|122233809|sp|Q0G9G5|NDHI_LIRTU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|113201048|gb|ABI32563.1| NADH-plastoquinone oxidoreductase subunit I [Liriodendron tulipifera] Length = 180 Score = 98.6 bits (244), Expect = 2e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFMITLSHANRLPVTIQYPYEKSITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWRLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|297159543|gb|ADI09255.1| NADH dehydrogenase subunit NuoI2 [Streptomyces bingchenggensis BCW-1] Length = 204 Score = 98.6 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 41/139 (29%), Positives = 57/139 (41%), Gaps = 14/139 (10%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + LR + T YP + PR RG L EE C C LC C Sbjct: 6 SGLAKGLAVTLRTMTRKAHTAQYPDVQPELPPRTRGVIGLF-----EENCTVCMLCAREC 60 Query: 74 PAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 P I I+S R+ ID C+YCG+C E CP DA+ P F Sbjct: 61 PDWCIYIDSHKETVPPAAPGGRERSRNVLDRFAIDFALCMYCGICIEVCPFDALFWSPEF 120 Query: 125 EFATETRQELYYDKERLLN 143 E+A E ++L +++++L Sbjct: 121 EYAEEDIRDLTHERDKLRE 139 >gi|282860766|ref|ZP_06269832.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Streptomyces sp. ACTE] gi|282564502|gb|EFB70038.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Streptomyces sp. ACTE] Length = 218 Score = 98.6 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 42/139 (30%), Positives = 55/139 (39%), Gaps = 14/139 (10%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + LR K T YP + PR RG L EE C C LC C Sbjct: 7 SGLAKGLAVTLRTMTKRTVTAQYPDVQPELPPRTRGVIGLF-----EENCTVCMLCAREC 61 Query: 74 PAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 P I I+S R+ ID C+YCG+C E CP DA+ P F Sbjct: 62 PDWCIYIDSHKETVPPAAPGGRERSRNVLDRFAIDFALCMYCGICIEVCPFDALFWSPEF 121 Query: 125 EFATETRQELYYDKERLLN 143 E+A EL +++++L Sbjct: 122 EYAETDIHELTHERDKLRE 140 >gi|182436714|ref|YP_001824433.1| putative NADH dehydrogenase chain I [Streptomyces griseus subsp. griseus NBRC 13350] gi|178465230|dbj|BAG19750.1| putative NADH dehydrogenase chain I [Streptomyces griseus subsp. griseus NBRC 13350] Length = 195 Score = 98.6 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 45/166 (27%), Positives = 60/166 (36%), Gaps = 26/166 (15%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + LR + T YP + PR RG L EE C C LC C Sbjct: 7 SGLAKGLAVTLRTMTRKTVTAQYPDAQPELPPRSRGVIGLF-----EENCTVCMLCAREC 61 Query: 74 PAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 P I I+S R+ ID C+YCG+C E CP DA+ P F Sbjct: 62 PDWCIYIDSHKETSPPAAPGGRERSRNVLDRFAIDFSLCMYCGICIEVCPFDALFWSPEF 121 Query: 125 EFATETRQELYYDKERL------------LNNGDRWESEIVRNIVT 158 E+A EL +++++L L+ G EI Sbjct: 122 EYAETDIHELTHERDKLREWMWTVPEPPALDPGAEEPKEIAAARKA 167 >gi|75300909|sp|Q8HVV1|NDHI_CALME RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|24460525|gb|AAN61703.1| NADH dehydrogenase subunit I [Calea megacephala] Length = 166 Score = 98.6 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFIITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|290489776|gb|ADD31295.1| NADH-plastoquinone oxidoreductase subunit I protein [Euonymus americanus] Length = 175 Score = 98.6 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWQFETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|290489774|gb|ADD31294.1| NADH-plastoquinone oxidoreductase subunit I protein [Cornus florida] Length = 167 Score = 98.6 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|168188207|gb|ACA14493.1| NADH dehydrogenase subunit I [Acicarpha spathulata] Length = 166 Score = 98.6 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPIVDWKLETEIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|156597947|gb|ABU85241.1| NADH-plastoquinone oxidoreductase subunit I [Cycas micronesica] Length = 185 Score = 98.6 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 55/122 (45%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP++K S RFRG +CIA ++C +CP Sbjct: 22 IGQGFMVTLYHMNRLPMTIQYPYDKLIPSERFRGRIHFEFD-----KCIAREVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ G +R + ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWNFGRDIGKKRLENHSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|323148879|ref|YP_004221971.1| NADH-plastoquinone oxidoreductase subunit I [Erodium carvifolium] gi|316926343|gb|ADU58196.1| NADH-plastoquinone oxidoreductase subunit I [Erodium carvifolium] Length = 171 Score = 98.6 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSLMITLSHANRFPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + + +R Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKFQTNIRKKRLFNYSIDFGICIFCGNCVEYCPTNCLAMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|269128578|ref|YP_003301948.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Thermomonospora curvata DSM 43183] gi|268313536|gb|ACY99910.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermomonospora curvata DSM 43183] Length = 178 Score = 98.6 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 44/136 (32%), Positives = 56/136 (41%), Gaps = 13/136 (9%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + LR + T YP + PR RG AL EE C C LC CP Sbjct: 9 LAKGLAVTLRTMTRRSVTRQYPQVRPDLPPRSRGVIALL-----EENCTVCMLCARECPD 63 Query: 76 QAITIESGPRC--------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 I I+S R+ ID C+YCG+C E CP DA+ P FE+A Sbjct: 64 WCIYIDSHKETLPAEGGGRPRTRNVLDRFAIDFALCMYCGICVEVCPFDALFWSPQFEYA 123 Query: 128 TETRQELYYDKERLLN 143 EL ++K+RL Sbjct: 124 EYDIAELTHEKDRLRE 139 >gi|24460728|gb|AAN61804.1| NADH dehydrogenase subunit I [Tridax balbisioides] Length = 166 Score = 98.6 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLAHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|325610487|gb|ADZ36438.1| NADH dehydrogenase 18 kDa subunit [Polyspora chrysandra] Length = 167 Score = 98.6 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFIITLSHANRLPVTIQYPYEKWITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|300711696|ref|YP_003737510.1| NADH-quinone oxidoreductase, chain I [Halalkalicoccus jeotgali B3] gi|299125379|gb|ADJ15718.1| NADH-quinone oxidoreductase, chain I [Halalkalicoccus jeotgali B3] Length = 153 Score = 98.6 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 46/130 (35%), Positives = 68/130 (52%), Gaps = 11/130 (8%) Query: 13 LKEFVGAFFLCLRYFF-KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71 + + +++ T+ YP SPRFRG H +ERCI C+ CE Sbjct: 1 MIGLFKSMATTMKHALDGNTFTVEYPETAPEVSPRFRGVHKF-----SQERCIWCRQCEN 55 Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 +CP I I + R +Y++ + +CIYC LC+E CPVDAI+ NFEF +T+ Sbjct: 56 VCPNDTIQIVQDEQ-----RNGEQYNLHIGQCIYCRLCEEVCPVDAILLTQNFEFTGDTK 110 Query: 132 QELYYDKERL 141 +L Y+KE+L Sbjct: 111 DDLVYNKEQL 120 >gi|110227132|ref|YP_665610.1| NADH dehydrogenase subunit I [Populus alba] gi|115502272|sp|Q14FA4|NDHI_POPAL RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|109945570|dbj|BAE97258.1| NADH dehydrogenase subunit I [Populus alba] Length = 176 Score = 98.6 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFMTTLSHVNRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWELETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYNRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|167630269|ref|YP_001680768.1| proton-translocating NADH-ubiquinone oxidoreductase, 23 kd, chain i [Heliobacterium modesticaldum Ice1] gi|167593009|gb|ABZ84757.1| proton-translocating NADH-ubiquinone oxidoreductase, 23 kd, chain i [Heliobacterium modesticaldum Ice1] Length = 147 Score = 98.6 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 40/128 (31%), Positives = 60/128 (46%), Gaps = 5/128 (3%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 K + ++ L+ FF+ K T YP RFRG +CIAC +C+ C Sbjct: 4 KGLLTGMWVTLKEFFRKKVTEEYPDVMPDLGDRFRGG----TLKLQTSKCIACGICQNAC 59 Query: 74 PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 P +I + S R + R+ Y D C++C LC +ACPV I F F+ +R++ Sbjct: 60 PNGSIKLTSV-RDENNKRKLSTYVHDAGLCLFCNLCIDACPVKCIDWTGEFAFSGYSRED 118 Query: 134 LYYDKERL 141 L +D L Sbjct: 119 LVFDCIEL 126 >gi|134093260|ref|YP_001109561.1| NADH dehydrogenase subunit I [Populus trichocarpa] gi|224102347|ref|XP_002334188.1| predicted protein [Populus trichocarpa] gi|224102355|ref|XP_002334190.1| predicted protein [Populus trichocarpa] gi|156632621|sp|A4GYX0|NDHI_POPTR RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|133712122|gb|ABO36765.1| NADH-plastoquinone oxidoreductase SU I [Populus trichocarpa] gi|222870343|gb|EEF07474.1| predicted protein [Populus trichocarpa] gi|222870345|gb|EEF07476.1| predicted protein [Populus trichocarpa] Length = 176 Score = 98.6 bits (244), Expect = 3e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFMTTLSHVNRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWELETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYNRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|229577808|ref|YP_002836144.1| NADH-plastoquinone oxidoreductase subunit I [Megaleranthis saniculifolia] gi|226933936|gb|ACO92069.1| NADH-plastoquinone oxidoreductase subunit I [Megaleranthis saniculifolia] Length = 180 Score = 98.2 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFMITLSHTNRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|68565792|sp|Q85FH1|NDHI_ADICA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|48476043|gb|AAP29445.2| NADH dehydrogenase subunit I [Adiantum capillus-veneris] Length = 167 Score = 98.2 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 36/126 (28%), Positives = 57/126 (45%), Gaps = 5/126 (3%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + T+ YP+EK S RFRG +CIAC++C +CP Sbjct: 22 IGQGFAVTLDHLNRLPITVQYPYEKKLPSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ ++ Y ID CI+CG C E CP + + +E ++ R EL Sbjct: 77 NLPVVDWIFLKDVKKKKLKNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSSYNRHELN 136 Query: 136 YDKERL 141 +D+ L Sbjct: 137 FDQTAL 142 >gi|149390497|ref|YP_001294325.1| NADH-plastoquinone oxidoreductase subunit I [Illicium oligandrum] gi|156632614|sp|A6MMZ9|NDHI_ILLOL RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|147917450|gb|ABQ52574.1| NADH-plastoquinone oxidoreductase subunit I [Illicium oligandrum] Length = 180 Score = 98.2 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFMITLSHTNRLPVTIQYPYEKSITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWRLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|319955925|ref|YP_004167188.1| NADH dehydrogenase subunit i [Nitratifractor salsuginis DSM 16511] gi|319418329|gb|ADV45439.1| NADH dehydrogenase subunit I [Nitratifractor salsuginis DSM 16511] Length = 207 Score = 98.2 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 52/169 (30%), Positives = 72/169 (42%), Gaps = 12/169 (7%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFK-----AKTTINYPFEKGSTSPRFRGEHAL-RRYP 57 F+ V E + R K TI YPFEK +PR+R H + R Sbjct: 32 FKRVVRRSVQLELFTGLKVTFREMIKALFMGEMHTIKYPFEKLPIAPRYRAIHEMKRLLE 91 Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 +G RCI C LCE IC A I I++ + + Y ++ +CI+CG C E CP A Sbjct: 92 SGHYRCIGCGLCEKICIANCIRIDTR-YDENQRKEVSEYTLNFGRCIFCGYCAEVCPELA 150 Query: 118 IVEGPNFEFATETRQELYYDKERL-----LNNGDRWESEIVRNIVTDSP 161 IV G +E A+E R E ++ L L N + + D Sbjct: 151 IVHGGRYEVASEQRAEYALFEDMLTPLDQLANQKEYPGFGAVSPDADEK 199 >gi|115605072|ref|YP_784524.1| NADH-plastoquinone oxidoreductase subunit I [Piper cenocladum] gi|122164317|sp|Q06GK9|NDHI_PIPCE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|112253801|gb|ABI14522.1| NADH-plastoquinone oxidoreductase subunit I [Piper cenocladum] Length = 180 Score = 98.2 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFAITLSHTNRLPVTIQYPYEKSITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|86605454|ref|YP_474217.1| NADH dehydrogenase subunit I [Synechococcus sp. JA-3-3Ab] gi|110287709|sp|Q2JWB4|NDHI_SYNJA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName: Full=NAD(P)H dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I; Short=NDH-I gi|86553996|gb|ABC98954.1| NADH-ubiquinone/plastoquinone oxidoreductase, I subunit [Synechococcus sp. JA-3-3Ab] Length = 210 Score = 98.2 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + + T+ YPFEK S RFRG +CIAC++C +CP Sbjct: 21 IGQGMGVVFDHMNRRPVTVQYPFEKLIPSERFRGRIHFEFD-----KCIACEICVRVCPI 75 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + Y ID CI+C C E CP + + ++E AT R EL Sbjct: 76 DLPVVDWVYNTELKKKELYSYSIDFGVCIFCANCVEFCPTNCLSVTEDYELATYDRHELN 135 Query: 136 YD 137 Y Sbjct: 136 YH 137 >gi|254416203|ref|ZP_05029957.1| NADH-plastoquinone oxidoreductase, I subunit [Microcoleus chthonoplastes PCC 7420] gi|196176885|gb|EDX71895.1| NADH-plastoquinone oxidoreductase, I subunit [Microcoleus chthonoplastes PCC 7420] Length = 207 Score = 98.2 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + + T+ YP+EK S R+RG +CI+C++C +CP Sbjct: 22 IGQGLSVTFDHMQRRPVTVQYPYEKLIPSERYRGRIHFEFD-----KCISCEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + Y ID CI+C C E CP + + +E +T R EL Sbjct: 77 NLPVVDYEFDKASKKKNLKHYSIDFGVCIFCANCIEYCPTNCLSATEEYEMSTYDRHELN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|139387498|ref|YP_001122851.1| NADH-plastoquinone oxidoreductase subunit I [Phaseolus vulgaris] gi|289066875|ref|YP_003434393.1| NADH-plastoquinone oxidoreductase subunit I [Vigna radiata] gi|156632620|sp|A4GGF0|NDHI_PHAVU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|112031020|gb|ABH88132.1| NADH-plastoquinone oxidoreductase subunit I [Phaseolus vulgaris] gi|158187181|gb|ABW22814.1| NADH-plastoquinone oxidoreductase subunit I [Phaseolus vulgaris] gi|259020062|gb|ACV90260.1| NADH-plastoquinone oxidoreductase subunit I [Vigna radiata] Length = 161 Score = 98.2 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + L + + TI YP+EK +S RFRG +CIAC++C +CP Sbjct: 22 IGQGLMITLSHANRLPVTIQYPYEKIISSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPIVDWKLETDIRKKRLLNYSIDFGICIFCGNCIEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|168188280|gb|ACA14529.1| NADH dehydrogenase subunit I [Gerbera piloselloides] gi|168188282|gb|ACA14530.1| NADH dehydrogenase subunit I [Gerbera serrata] Length = 166 Score = 98.2 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGEGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|290489782|gb|ADD31298.1| NADH-plastoquinone oxidoreductase subunit I protein [Heuchera sanguinea] Length = 167 Score = 98.2 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|290489780|gb|ADD31297.1| NADH-plastoquinone oxidoreductase subunit I protein [Gunnera manicata] Length = 167 Score = 98.2 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + ++ + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETNIRKKQLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|290489790|gb|ADD31302.1| NADH-plastoquinone oxidoreductase subunit I protein [Quercus nigra] Length = 165 Score = 98.2 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPM 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWELETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|150251538|ref|YP_001312270.1| NADH dehydrogenase subunit I [Cycas taitungensis] gi|149941588|dbj|BAF65012.1| NADH dehydrogenase subunit I [Cycas taitungensis] Length = 185 Score = 98.2 bits (243), Expect = 3e-19, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 55/122 (45%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP++K S RFRG +CIA ++C +CP Sbjct: 22 IGQGFMVTLYHMNRLPMTIQYPYDKLIPSERFRGRIHFEFD-----KCIAREVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ G +R + ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWNFGRDIGKKRLENHSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|306486046|gb|ADM92670.1| NADH-plastoquinone oxidoreductase subunit I [Davidia involucrata] Length = 163 Score = 98.2 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|326777314|ref|ZP_08236579.1| NADH dehydrogenase (quinone) [Streptomyces cf. griseus XylebKG-1] gi|326657647|gb|EGE42493.1| NADH dehydrogenase (quinone) [Streptomyces cf. griseus XylebKG-1] Length = 198 Score = 98.2 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 41/139 (29%), Positives = 55/139 (39%), Gaps = 14/139 (10%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + LR + T YP + PR RG L EE C C LC C Sbjct: 7 SGLAKGLAVTLRTMTRKTVTAQYPDAQPELPPRSRGVIGLF-----EENCTVCMLCAREC 61 Query: 74 PAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 P I I+S R+ ID C+YCG+C E CP DA+ P F Sbjct: 62 PDWCIYIDSHKETSPPAAPGGRERSRNVLDRFAIDFSLCMYCGICIEVCPFDALFWSPEF 121 Query: 125 EFATETRQELYYDKERLLN 143 E+A EL +++++L Sbjct: 122 EYAETDIHELTHERDKLRE 140 >gi|91984047|ref|YP_567132.1| NADH dehydrogenase subunit I [Vitis vinifera] gi|225466295|ref|XP_002274492.1| PREDICTED: similar to NADH dehydrogenase subunit I [Vitis vinifera] gi|225466352|ref|XP_002274882.1| PREDICTED: similar to NADH dehydrogenase subunit I [Vitis vinifera] gi|225466424|ref|XP_002262806.1| PREDICTED: similar to NADH dehydrogenase subunit I [Vitis vinifera] gi|225466426|ref|XP_002262894.1| PREDICTED: similar to NADH dehydrogenase subunit I [Vitis vinifera] gi|115502274|sp|Q0ZIW4|NDHI_VITVI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|91701705|gb|ABE47589.1| NADH-plastoquinone oxidoreductase subunit I [Vitis vinifera] Length = 167 Score = 98.2 bits (243), Expect = 4e-19, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ ++ + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKQLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|313184045|ref|YP_004021202.1| NADH-plastoquinone oxidoreductase subunit I [Castanea mollissima] gi|309321572|gb|ADO65112.1| NADH-plastoquinone oxidoreductase subunit I [Castanea mollissima] Length = 165 Score = 97.9 bits (242), Expect = 4e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPM 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWELETNIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|56421885|ref|YP_149203.1| NADH dehydrogenase subunit I [Geobacillus kaustophilus HTA426] gi|56381727|dbj|BAD77635.1| NADH:ubiquinone oxidoreductase 23 kD subunit (chain I)/Formate hydrogenlyase subunit 6 [Geobacillus kaustophilus HTA426] Length = 135 Score = 97.9 bits (242), Expect = 4e-19, Method: Composition-based stats. Identities = 42/130 (32%), Positives = 54/130 (41%), Gaps = 7/130 (5%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + L+ + K T +YP E RFRG E+CI C C ICP + Sbjct: 1 MKGLAYTLKELTREKVTYDYPHEPLPLPDRFRGIQKFY-----PEKCIVCNQCVNICPTE 55 Query: 77 AITIESGPRCHD--GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134 I + + Y+I+ CI C LC E CP +AIV NFE A +R L Sbjct: 56 CIQLTGKKHPDPTKKGKVIETYNINFEICILCDLCTEVCPTEAIVMTNNFELAEYSRDAL 115 Query: 135 YYDKERLLNN 144 Y D L N Sbjct: 116 YKDLAWLDEN 125 >gi|290489768|gb|ADD31291.1| NADH-plastoquinone oxidoreductase subunit I protein [Rhododendron simsii] Length = 175 Score = 97.9 bits (242), Expect = 4e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFMITLSHVNRFPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIQKKRLFNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|323148958|ref|YP_004222512.1| NADH-plastoquinone oxidoreductase subunit I [Smilax china] gi|308742649|gb|ADO33500.1| NADH-plastoquinone oxidoreductase subunit I [Smilax china] Length = 182 Score = 97.9 bits (242), Expect = 4e-19, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFIITLSHTNRLPVTIQYPYEKSITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ ++ + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWRFEKDIKKKQLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|290489770|gb|ADD31292.1| NADH-plastoquinone oxidoreductase subunit I protein [Berberidopsis corallina] Length = 167 Score = 97.9 bits (242), Expect = 4e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFMVTLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|304437254|ref|ZP_07397214.1| proton-translocating NADH-quinone oxidoreductase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369746|gb|EFM23411.1| proton-translocating NADH-quinone oxidoreductase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 209 Score = 97.9 bits (242), Expect = 4e-19, Method: Composition-based stats. Identities = 34/127 (26%), Positives = 59/127 (46%), Gaps = 5/127 (3%) Query: 11 LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70 +F K + + ++ + K T+ YP EK + FRG + CI C +C Sbjct: 1 MFGKGLLTGMSVTWKHLWGKKETVCYPEEKLPMTDNFRGGN----LAMDWRVCIGCSMCA 56 Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 CP +A+ + P R Y +C+YC LC EACPV+ +V ++ A+ + Sbjct: 57 NACPNKALDLTIVPDAK-KKRHMKSYIHHSGRCLYCNLCVEACPVNTLVWDKDYAIASWS 115 Query: 131 RQELYYD 137 ++ + +D Sbjct: 116 KETMTHD 122 >gi|222479143|ref|YP_002565380.1| NADH-quinone oxidoreductase, chain I [Halorubrum lacusprofundi ATCC 49239] gi|222452045|gb|ACM56310.1| NADH-quinone oxidoreductase, chain I [Halorubrum lacusprofundi ATCC 49239] Length = 153 Score = 97.9 bits (242), Expect = 4e-19, Method: Composition-based stats. Identities = 45/130 (34%), Positives = 69/130 (53%), Gaps = 11/130 (8%) Query: 13 LKEFVGAFFLCLRYFF-KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71 + + + +++ T+ YP E SPRFRG H +ERCI C+ CE Sbjct: 1 MIGLMKSMATTMKHALDGKTFTVEYPEEAPEVSPRFRGVHKF-----SQERCIWCRQCEN 55 Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 +CP I I + R +Y++ + +CIYC LC+E CPVDAI+ NFEF +T+ Sbjct: 56 VCPNDTIQIVQDDQ-----RNGEQYNLHIGQCIYCRLCEEVCPVDAILLTQNFEFTADTK 110 Query: 132 QELYYDKERL 141 + ++KE+L Sbjct: 111 DDFVFNKEQL 120 >gi|325610637|gb|ADZ36565.1| NADH dehydrogenase 18 kDa subunit [Stewartia crassifolia] Length = 167 Score = 97.9 bits (242), Expect = 4e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFIITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|76801793|ref|YP_326801.1| NADH dehydrogenase-like complex, subunit I [Natronomonas pharaonis DSM 2160] gi|76557658|emb|CAI49241.1| NADH dehydrogenase-like complex, subunit I [Natronomonas pharaonis DSM 2160] Length = 153 Score = 97.9 bits (242), Expect = 4e-19, Method: Composition-based stats. Identities = 48/130 (36%), Positives = 71/130 (54%), Gaps = 11/130 (8%) Query: 13 LKEFVGAFFLCLRYFF-KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71 + + + +++ K T+ YP E SPRFRG H +ERCI C+ CE Sbjct: 1 MIGMLKSMATTMKHALDGEKFTVQYPEETPEVSPRFRGVHKF-----SQERCIWCRQCEN 55 Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 +CP I I + R +Y++ + +CIYC LC+E CPVDAI+ NFEF +T+ Sbjct: 56 VCPNDTIQIVTDD-----MRNGEQYNLHIGQCIYCRLCEEVCPVDAILLTQNFEFTGDTK 110 Query: 132 QELYYDKERL 141 +L Y+KE+L Sbjct: 111 DDLAYNKEQL 120 >gi|238927264|ref|ZP_04659024.1| NADH dehydrogenase (quinone) [Selenomonas flueggei ATCC 43531] gi|238884851|gb|EEQ48489.1| NADH dehydrogenase (quinone) [Selenomonas flueggei ATCC 43531] Length = 207 Score = 97.9 bits (242), Expect = 4e-19, Method: Composition-based stats. Identities = 35/127 (27%), Positives = 58/127 (45%), Gaps = 5/127 (3%) Query: 11 LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70 +F K + + ++ + K T+ YP EK + FRG + CI C +C Sbjct: 1 MFGKGLLTGMSVTWKHLWGKKETVCYPEEKLPMTDNFRGGN----LAMDWRVCIGCSMCA 56 Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 CP +A+ + P R Y +C+YC LC EACPV +V ++ AT + Sbjct: 57 NACPNKALDLTIVPDAK-KKRHMKSYIHHSGRCLYCNLCVEACPVHTLVWDKDYAIATWS 115 Query: 131 RQELYYD 137 ++ + +D Sbjct: 116 KETMTHD 122 >gi|168699247|ref|ZP_02731524.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Gemmata obscuriglobus UQM 2246] Length = 184 Score = 97.9 bits (242), Expect = 4e-19, Method: Composition-based stats. Identities = 44/148 (29%), Positives = 57/148 (38%), Gaps = 13/148 (8%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYF---FKA---KTTINYPFEKGSTSPRFRGEHALR 54 MR + NV +L + LRYF F+ YP PR+RG H Sbjct: 1 MRTWIRNV-YLATTTLAAGMSVTLRYFVQSFRRGTFAAHFAYPERPVPVRPRYRGFHRF- 58 Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCH-DGTRRTVRYDIDMIKCIYCGLCQEAC 113 CI C C CP I I+ + ID KC++C LC + C Sbjct: 59 ----DLTTCIGCDKCARACPVDCIYIDKEKAPPPHKGFVVTGFKIDYTKCMFCALCVDPC 114 Query: 114 PVDAIVEGPNFEFATETRQELYYDKERL 141 PVD I G N + +T TR D +L Sbjct: 115 PVDCIFMGSNHDISTYTRDGCVVDYAKL 142 >gi|320009163|gb|ADW04013.1| putative NADH dehydrogenase chain I [Streptomyces flavogriseus ATCC 33331] Length = 206 Score = 97.9 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 42/139 (30%), Positives = 55/139 (39%), Gaps = 14/139 (10%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + LR K T YP + PR RG L EE C C LC C Sbjct: 7 SGLAKGLAVTLRTMTKRTVTAQYPDVQPELPPRTRGVIGLF-----EENCTVCMLCAREC 61 Query: 74 PAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 P I I+S R+ ID C+YCG+C E CP DA+ P F Sbjct: 62 PDWCIYIDSHKETTPPAAPGGRERSRNVLDRFAIDFALCMYCGICIEVCPFDALFWSPEF 121 Query: 125 EFATETRQELYYDKERLLN 143 E+A EL +++++L Sbjct: 122 EYAETDIHELTHERDKLRE 140 >gi|159161215|ref|YP_001542501.1| NADH-plastoquinone oxidoreductase subunit I [Ceratophyllum demersum] gi|148508498|gb|ABQ81505.1| NADH-plastoquinone oxidoreductase subunit I [Ceratophyllum demersum] gi|227481173|emb|CAP62552.1| NADH dehydrogenase 18kD subunit [Ceratophyllum demersum] Length = 170 Score = 97.9 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFMITLSHANRLPITIQYPYEKSITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|290489754|gb|ADD31284.1| NADH-plastoquinone oxidoreductase subunit I protein [Dillenia indica] Length = 169 Score = 97.9 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFMITLSHANRLPVTIQYPYEKSITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKFETDIRKKRLFNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|75300874|sp|Q8HVR6|NDHI_HOFFA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|24460596|gb|AAN61738.1| NADH dehydrogenase subunit I [Hofmeisteria fasciculata] Length = 166 Score = 97.9 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFIITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYHRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|197131382|gb|ACH47209.1| NADH-plastoquinone oxidoreductase subunit I [Geranium carolinianum] Length = 173 Score = 97.9 bits (242), Expect = 5e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFMITLSHANRFPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKFETDIRKKRLFNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|156598455|gb|ABU85487.1| NADH-plastoquinone oxidoreductase subunit I [Passiflora biflora] Length = 163 Score = 97.5 bits (241), Expect = 5e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFMITLSHANRLPVTIQYPYEKFITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R Y ID CI+CG C E CP + + +E +T +R EL Sbjct: 77 DLPVVDWKLETDIRKKRLFNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYSRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|32480899|ref|NP_862809.1| NADH dehydrogenase subunit I [Calycanthus floridus var. glaucus] gi|75297114|sp|Q7YJT0|NDHI_CALFG RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|32399435|emb|CAD28776.1| NADH dehydrogenase 18kD subunit [Calycanthus floridus var. glaucus] Length = 180 Score = 97.5 bits (241), Expect = 5e-19, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 56/122 (45%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFMITLSHANRLPVTIQYPYEKSITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 + +R + Y ID CI+CG C E CP + + +E + R EL Sbjct: 77 DLPVVHWRLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSAYNRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|194476797|ref|YP_002048976.1| NADH dehydrogenase subunit I [Paulinella chromatophora] gi|171191804|gb|ACB42766.1| NADH dehydrogenase subunit I [Paulinella chromatophora] Length = 176 Score = 97.5 bits (241), Expect = 5e-19, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 53/123 (43%), Gaps = 6/123 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 V + + + T+ YP+EK SPR+RG +CIAC++C +CP Sbjct: 22 IVQGLSVTFDHLKRRPITVQYPYEKLIPSPRYRGRIHFELD-----KCIACEVCVKVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVR-YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134 ++ P + +R Y ID CI+C C E CP + +E + R L Sbjct: 77 NLPVVDFVPGPTSKVGKELRNYSIDFGVCIFCANCVEYCPTQCLSMTEEYELTSFDRHNL 136 Query: 135 YYD 137 YD Sbjct: 137 NYD 139 >gi|156573585|gb|ABU85130.1| NADH-plastoquinone oxidoreductase subunit I [Yucca schidigera] Length = 180 Score = 97.5 bits (241), Expect = 5e-19, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSLIITLSHTNRLPVTIQYPYEKSITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ ++ + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWRFEKDIKKKQLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|302536206|ref|ZP_07288548.1| NADH-plastoquinone oxidoreductase, I subunit [Streptomyces sp. C] gi|302445101|gb|EFL16917.1| NADH-plastoquinone oxidoreductase, I subunit [Streptomyces sp. C] Length = 203 Score = 97.5 bits (241), Expect = 5e-19, Method: Composition-based stats. Identities = 46/166 (27%), Positives = 60/166 (36%), Gaps = 26/166 (15%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + LR K T YP + PR RG L EE C C LC C Sbjct: 7 SGLAKGLAVTLRTMTKRAHTAQYPEVQPELPPRSRGVIGLF-----EENCTVCMLCAREC 61 Query: 74 PAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 P I I+S R+ ID C+YCG+C E CP DA+ P F Sbjct: 62 PDWCIYIDSHKETVPAAAPGGRERSRNVLDRFAIDFSLCMYCGICIEVCPFDALFWSPEF 121 Query: 125 EFATETRQELYYDKERL------------LNNGDRWESEIVRNIVT 158 E+A EL +++++L L+ G EI Sbjct: 122 EYAETDIHELTHERDKLREWMWTVPAPPALDPGAEEPKEIAAARKA 167 >gi|86608350|ref|YP_477112.1| NADH dehydrogenase subunit I [Synechococcus sp. JA-2-3B'a(2-13)] gi|110287710|sp|Q2JHK4|NDHI_SYNJB RecName: Full=NAD(P)H-quinone oxidoreductase subunit I; AltName: Full=NAD(P)H dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I; Short=NDH-I gi|86556892|gb|ABD01849.1| NADH-ubiquinone/plastoquinone oxidoreductase, I subunit [Synechococcus sp. JA-2-3B'a(2-13)] Length = 210 Score = 97.5 bits (241), Expect = 5e-19, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 51/122 (41%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + + T+ YPFEK S RFRG +CIAC++C +CP Sbjct: 21 IGQGMGVVFDHMGRRPVTVQYPFEKLIPSERFRGRIHFEFD-----KCIACEICVRVCPI 75 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + Y ID CI+C C E CP + + ++E AT R +L Sbjct: 76 DLPVVDWAYNPELKKKELYSYSIDFGVCIFCANCVEFCPTNCLSVTEDYELATYDRHDLN 135 Query: 136 YD 137 Y Sbjct: 136 YH 137 >gi|333025064|ref|ZP_08453128.1| putative NADH dehydrogenase chain I [Streptomyces sp. Tu6071] gi|332744916|gb|EGJ75357.1| putative NADH dehydrogenase chain I [Streptomyces sp. Tu6071] Length = 192 Score = 97.5 bits (241), Expect = 5e-19, Method: Composition-based stats. Identities = 41/139 (29%), Positives = 54/139 (38%), Gaps = 14/139 (10%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + LR + T YP PR RG L EE C C LC C Sbjct: 7 TGLAKGLAVTLRTMTRKSVTAQYPDTLPPLPPRSRGVIGLF-----EENCTVCMLCAREC 61 Query: 74 PAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 P I I+S R+ ID C+YCG+C E CP DA+ P F Sbjct: 62 PDWCIYIDSHKETVPPAAPGGRERSRNVLDRFAIDFSLCMYCGICIEVCPFDALFWSPEF 121 Query: 125 EFATETRQELYYDKERLLN 143 E+A EL +++++L Sbjct: 122 EYAETDIHELTHERDKLRE 140 >gi|325610549|gb|ADZ36491.1| NADH dehydrogenase 18 kDa subunit [Stewartia rubiginosa] gi|325610562|gb|ADZ36502.1| NADH dehydrogenase 18 kDa subunit [Stewartia serrata] gi|325610570|gb|ADZ36509.1| NADH dehydrogenase 18 kDa subunit [Stewartia monadelpha] gi|325610583|gb|ADZ36520.1| NADH dehydrogenase 18 kDa subunit [Stewartia rostrata] Length = 167 Score = 97.5 bits (241), Expect = 6e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFIITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|295065783|ref|YP_003587723.1| NADH dehydrogenase subunit I [Anomochloa marantoidea] gi|251765307|gb|ACT15461.1| NADH dehydrogenase subunit I [Anomochloa marantoidea] Length = 180 Score = 97.5 bits (241), Expect = 6e-19, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI+YP+EK S RFRG +CIAC++C +CP Sbjct: 22 IGQSFIITLSHTNRLPITIHYPYEKSIASERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ ++ + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPLVDWRFEKDIKKKQLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|239943531|ref|ZP_04695468.1| putative NADH dehydrogenase chain I [Streptomyces roseosporus NRRL 15998] gi|239989985|ref|ZP_04710649.1| putative NADH dehydrogenase chain I [Streptomyces roseosporus NRRL 11379] gi|291446998|ref|ZP_06586388.1| NADH-quinone oxidoreductase subunit I 2 [Streptomyces roseosporus NRRL 15998] gi|291349945|gb|EFE76849.1| NADH-quinone oxidoreductase subunit I 2 [Streptomyces roseosporus NRRL 15998] Length = 203 Score = 97.1 bits (240), Expect = 6e-19, Method: Composition-based stats. Identities = 42/139 (30%), Positives = 55/139 (39%), Gaps = 14/139 (10%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + LR K T YP + PR RG L EE C C LC C Sbjct: 7 SGLAKGLAVTLRTMTKKTVTAQYPDTQPELPPRSRGVIGLF-----EENCTVCMLCAREC 61 Query: 74 PAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 P I I+S R+ ID C+YCG+C E CP DA+ P F Sbjct: 62 PDWCIYIDSHKETSPPAAPGGRERSRNVLDRFAIDFSLCMYCGICIEVCPFDALFWSPEF 121 Query: 125 EFATETRQELYYDKERLLN 143 E+A EL +++++L Sbjct: 122 EYAETDIHELTHERDKLRE 140 >gi|115604989|ref|YP_784441.1| NADH-plastoquinone oxidoreductase subunit I [Drimys granadensis] gi|122164392|sp|Q06GU2|NDHI_DRIGR RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|112032717|gb|ABH88352.1| NADH-plastoquinone oxidoreductase subunit I [Drimys granadensis] Length = 180 Score = 97.1 bits (240), Expect = 6e-19, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFMITLSHANRLPVTIQYPYEKSITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E + R EL Sbjct: 77 DLPVVDWRLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSIYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|15789837|ref|NP_279661.1| NADH dehydrogenase/oxidoreductase-like protein [Halobacterium sp. NRC-1] gi|169235558|ref|YP_001688758.1| NADH dehydrogenase-like complex subunit I [Halobacterium salinarum R1] gi|10580231|gb|AAG19141.1| NADH dehydrogenase/oxidoreductase-like protein [Halobacterium sp. NRC-1] gi|167726624|emb|CAP13409.1| NADH dehydrogenase-like complex subunit I [Halobacterium salinarum R1] Length = 153 Score = 97.1 bits (240), Expect = 7e-19, Method: Composition-based stats. Identities = 45/130 (34%), Positives = 69/130 (53%), Gaps = 11/130 (8%) Query: 13 LKEFVGAFFLCLRY-FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71 + + + +++ T+ YP E S RFRG H +ERCI C+ CE Sbjct: 1 MIGLLKSMATTMKHALSGDTFTVEYPEEAPEVSARFRGVHKF-----SQERCIWCRQCEN 55 Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 +CP I I + R +Y++ + +CIYC LC+E CPVDAI+ NFEF +T+ Sbjct: 56 VCPNDTIQIVTD-----NQRNGEQYNLHVGQCIYCRLCEEVCPVDAILLTENFEFTGDTK 110 Query: 132 QELYYDKERL 141 +L ++KE+L Sbjct: 111 HDLVFNKEQL 120 >gi|325610505|gb|ADZ36453.1| NADH dehydrogenase 18 kDa subunit [Schima khasiana] gi|325610513|gb|ADZ36460.1| NADH dehydrogenase 18 kDa subunit [Gordonia lasianthus] gi|325610521|gb|ADZ36467.1| NADH dehydrogenase 18 kDa subunit [Franklinia alatamaha] Length = 167 Score = 97.1 bits (240), Expect = 7e-19, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFIITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E + R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSAYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|313183875|ref|YP_004021718.1| NADH-plastoquinone oxidoreductase subunit I [Prunus persica] gi|309321487|gb|ADO65028.1| NADH-plastoquinone oxidoreductase subunit I [Prunus persica] Length = 172 Score = 97.1 bits (240), Expect = 7e-19, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK T+ RFRG +CIAC++C +CP Sbjct: 22 IGQSFMITLSHANRLPVTIQYPYEKLITAERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|302521254|ref|ZP_07273596.1| NADH-plastoquinone oxidoreductase, I subunit [Streptomyces sp. SPB78] gi|318056640|ref|ZP_07975363.1| putative NADH dehydrogenase chain I [Streptomyces sp. SA3_actG] gi|318077269|ref|ZP_07984601.1| putative NADH dehydrogenase chain I [Streptomyces sp. SA3_actF] gi|302430149|gb|EFL01965.1| NADH-plastoquinone oxidoreductase, I subunit [Streptomyces sp. SPB78] Length = 192 Score = 97.1 bits (240), Expect = 7e-19, Method: Composition-based stats. Identities = 41/139 (29%), Positives = 54/139 (38%), Gaps = 14/139 (10%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + LR + T YP PR RG L EE C C LC C Sbjct: 7 TGLAKGLAVTLRTMTRKSVTAQYPDTLPPLPPRSRGVIGLF-----EENCTVCMLCAREC 61 Query: 74 PAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 P I I+S R+ ID C+YCG+C E CP DA+ P F Sbjct: 62 PDWCIYIDSHKETVPPAAPGGRERSRNVLDRFAIDFSLCMYCGICIEVCPFDALFWSPEF 121 Query: 125 EFATETRQELYYDKERLLN 143 E+A EL +++++L Sbjct: 122 EYAETDIHELTHERDKLRE 140 >gi|218670705|ref|ZP_03520376.1| probable NADH-ubiquinone oxidoreductase protein [Rhizobium etli GR56] Length = 141 Score = 97.1 bits (240), Expect = 7e-19, Method: Composition-based stats. Identities = 46/131 (35%), Positives = 68/131 (51%), Gaps = 2/131 (1%) Query: 7 NVSFLFLKEFVGAFFLCLRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEERCIA 65 + + F + A L Y F T+ YP EK R+RG H L R GE +C+A Sbjct: 11 WIGWAFFADLANALVLTFGYLFSRTVTMQYPDKEKWLPYSRYRGHHFLTRDDEGEIKCVA 70 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 C+LC ICP I + G R +++ID +C++CGLC++ACP DAI G +E Sbjct: 71 CELCARICPCDCIEVVPYED-EKGNRHPAKFEIDTARCLFCGLCEDACPADAIALGQQYE 129 Query: 126 FATETRQELYY 136 F++ + +L Sbjct: 130 FSSFSSADLVI 140 >gi|197131390|gb|ACH47213.1| NADH-plastoquinone oxidoreductase subunit I [Sarcocaulon vanderietiae] Length = 176 Score = 97.1 bits (240), Expect = 7e-19, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSLMITLSHANRFPVTIQYPYEKFITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPLVDWKFESDIRKKRLLNYSIDFGLCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|317046225|ref|YP_004072514.1| NADH dehydrogenase 18 kDa subunit [Corynocarpus laevigata] gi|309252942|gb|ADO60362.1| NADH dehydrogenase 18 kDa subunit [Corynocarpus laevigata] Length = 169 Score = 97.1 bits (240), Expect = 7e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|4150870|emb|CAA09813.1| ndhI protein [Hordeum vulgare subsp. vulgare] Length = 180 Score = 97.1 bits (240), Expect = 7e-19, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F L + + TI+YP+EK T RFRG +CIAC++C +CP Sbjct: 22 IGQSFITTLSHTNRLPITIHYPYEKSITPERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ ++ + Y ID CI+CG C E CP + +E +T R EL Sbjct: 77 DLPVVDWRFEKDIKRKQLLNYSIDFGVCIFCGNCVEYCPTSCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|11497585|ref|NP_054992.1| NADH dehydrogenase subunit I [Spinacia oleracea] gi|18203252|sp|Q9M3I7|NDHI_SPIOL RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|7636166|emb|CAB88788.1| NADH dehydrogenase 18kD subunit [Spinacia oleracea] Length = 170 Score = 97.1 bits (240), Expect = 7e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C CP Sbjct: 22 IGQSFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRACPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|294814432|ref|ZP_06773075.1| NADH-quinone oxidoreductase subunit I [Streptomyces clavuligerus ATCC 27064] gi|326442822|ref|ZP_08217556.1| NADH dehydrogenase subunit NuoI2 [Streptomyces clavuligerus ATCC 27064] gi|294327031|gb|EFG08674.1| NADH-quinone oxidoreductase subunit I [Streptomyces clavuligerus ATCC 27064] Length = 212 Score = 97.1 bits (240), Expect = 7e-19, Method: Composition-based stats. Identities = 41/139 (29%), Positives = 56/139 (40%), Gaps = 14/139 (10%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + LR + T YP + PR RG L EE C C LC C Sbjct: 7 SGLAKGLAVTLRTMTRKTVTAQYPDVQPDLPPRTRGVIGLF-----EENCTVCMLCAREC 61 Query: 74 PAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 P I I+S R+ ID C+YCG+C E CP DA+ P F Sbjct: 62 PDWCIYIDSHKETVPAAAPGGRERSRNVLDRFAIDFSLCMYCGICIEVCPFDALFWSPEF 121 Query: 125 EFATETRQELYYDKERLLN 143 E+A +EL +++++L Sbjct: 122 EYAETDIRELTHERDKLRE 140 >gi|320161224|ref|YP_004174448.1| iron-sulfur binding protein [Anaerolinea thermophila UNI-1] gi|319995077|dbj|BAJ63848.1| iron-sulfur binding protein [Anaerolinea thermophila UNI-1] Length = 203 Score = 97.1 bits (240), Expect = 7e-19, Method: Composition-based stats. Identities = 41/183 (22%), Positives = 63/183 (34%), Gaps = 35/183 (19%) Query: 16 FVGAFFLCLRYF----------------------------FKAKTTINYPFEKGSTSPRF 47 + ++ ++F + TI YP EK F Sbjct: 6 IIRGLWVTFKHFILTYIEDIRAGKKRYYTQEGILARTRSDVRGAFTIQYPEEKYPVPEEF 65 Query: 48 RGEHALRR----YPNGEERCIACKLCEAICPAQAIT--IESGPRCHDGTRRTVRYDIDMI 101 R L RC +C +C +CP Q I + P + ID+ Sbjct: 66 RYIPFLVYEEGENREKNYRCTSCGICAKVCPPQCIWIVRTTDPNTGKPIPAPAEFYIDVD 125 Query: 102 KCIYCGLCQEACPVDAIVEGPNFEFATETR-QELYYDKERLLNNGDRWESEIVRNIVTDS 160 C+ CGLC E CP DAI ++E A+ R + ++KERL + +N + Sbjct: 126 ICMNCGLCAEYCPFDAIKMDHDYEIASYNRFADHIFNKERLGKPLSYYAQIRPQNFAREE 185 Query: 161 PYR 163 R Sbjct: 186 AAR 188 >gi|118430441|ref|YP_874706.1| NADH-plastoquinone oxidoreductase subunit I [Hordeum vulgare subsp. vulgare] gi|126302574|sp|O98692|NDHI_HORVU RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|118201095|gb|ABK79466.1| NADH-plastoquinone oxidoreductase subunit I [Hordeum vulgare subsp. vulgare] Length = 180 Score = 97.1 bits (240), Expect = 7e-19, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F L + + TI+YP+EK T RFRG +CIAC++C +CP Sbjct: 22 IGQSFITTLSHTNRLPITIHYPYEKSITPERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ ++ + Y ID CI+CG C E CP + +E +T R EL Sbjct: 77 DLPVVDWRFEKDIKRKQLLNYSIDFGVCIFCGNCVEYCPTSCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|149390405|ref|YP_001294404.1| NADH dehydrogenase subunit I [Dioscorea elephantipes] gi|156632612|sp|A6MMQ9|NDHI_DIOEL RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|148668097|gb|ABR01481.1| NADH-plastoquinone oxidoreductase subunit I [Dioscorea elephantipes] Length = 180 Score = 97.1 bits (240), Expect = 8e-19, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK S RFRG +CIAC++C +CP Sbjct: 22 IGQSFIITLSHTNRLPVTIQYPYEKSIASERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + ++ + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWRLEKNIKKKQLLNYSIDFGFCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|14017627|ref|NP_114312.1| NADH dehydrogenase subunit I [Triticum aestivum] gi|17380134|sp|P05312|NDHI_WHEAT RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|13928260|dbj|BAB47089.1| NADH dehydrogenase 18kDa subunit [Triticum aestivum] Length = 180 Score = 97.1 bits (240), Expect = 8e-19, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F L + + TI+YP+EK T RFRG +CIAC++C +CP Sbjct: 22 IGQSFITTLSHTNRLPITIHYPYEKSITPERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ ++ + Y ID CI+CG C E CP + +E +T R EL Sbjct: 77 DLPVVDWRFEKDIKRKQLLNYSIDFGVCIFCGNCVEYCPTSCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|302543403|ref|ZP_07295745.1| NADH-quinone oxidoreductase subunit I 2 [Streptomyces hygroscopicus ATCC 53653] gi|302461021|gb|EFL24114.1| NADH-quinone oxidoreductase subunit I 2 [Streptomyces himastatinicus ATCC 53653] Length = 195 Score = 97.1 bits (240), Expect = 8e-19, Method: Composition-based stats. Identities = 41/139 (29%), Positives = 57/139 (41%), Gaps = 14/139 (10%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + LR + T YP + PR RG L EE C C LC C Sbjct: 6 SGLAKGLAVTLRTMTRRSHTAQYPDAQPELPPRTRGVIGLF-----EENCTVCMLCAREC 60 Query: 74 PAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 P I I+S R+ ID C+YCG+C E CP DA+ P F Sbjct: 61 PDWCIYIDSHKETVPPAAPGGRERSRNVLDRFAIDFALCMYCGICIEVCPFDALFWSPEF 120 Query: 125 EFATETRQELYYDKERLLN 143 E+A E ++L +++++L Sbjct: 121 EYAEEDIRDLTHERDKLRE 139 >gi|257051788|ref|YP_003129621.1| NADH-quinone oxidoreductase, chain I [Halorhabdus utahensis DSM 12940] gi|256690551|gb|ACV10888.1| NADH-quinone oxidoreductase, chain I [Halorhabdus utahensis DSM 12940] Length = 153 Score = 97.1 bits (240), Expect = 8e-19, Method: Composition-based stats. Identities = 47/130 (36%), Positives = 66/130 (50%), Gaps = 11/130 (8%) Query: 13 LKEFVGAFFLCLRYFF-KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71 + + +++ T+ YP SPRFRG H +ERCI C+ CE Sbjct: 1 MIGVLKGMATTMKHALDGKTFTVEYPETAPEVSPRFRGVH-----KYSQERCIWCRQCEN 55 Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 +CP I I + R +Y++ + +CIYC LC+E CP DAIV NFEF +T+ Sbjct: 56 VCPNDTIQIVMDDQ-----RNGEQYNLHVGQCIYCRLCEEVCPTDAIVLTQNFEFVGDTK 110 Query: 132 QELYYDKERL 141 +L YDKE L Sbjct: 111 DDLAYDKEEL 120 >gi|111074963|gb|ABH04825.1| NAD(P)H-quinone oxidoreductase 23 kDa subunit [Heliobacillus mobilis] Length = 147 Score = 96.7 bits (239), Expect = 8e-19, Method: Composition-based stats. Identities = 38/126 (30%), Positives = 56/126 (44%), Gaps = 5/126 (3%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + F+ ++ FF+ T YP RFRG +CI+C +C CP Sbjct: 6 LLKGMFVTIQEFFRKPVTEEYPDVMPDLGDRFRGGTI----KLKTSKCISCGICMNSCPN 61 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 +I + S R + R Y D C+YC LC E+CPV I F F+ +R++L Sbjct: 62 GSIKLTSV-RDENNKRHLSTYVHDSGLCLYCNLCIESCPVKCIDWTNEFAFSGYSREDLI 120 Query: 136 YDKERL 141 +D L Sbjct: 121 FDCIDL 126 >gi|156598297|gb|ABU85410.1| NADH-plastoquinone oxidoreductase subunit I [Musa acuminata] Length = 180 Score = 96.7 bits (239), Expect = 9e-19, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFIITLSHTNRLPVTIQYPYEKSITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ ++ + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWRLERDMKKKQLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|290489784|gb|ADD31299.1| NADH-plastoquinone oxidoreductase subunit I protein [Liquidambar styraciflua] Length = 160 Score = 96.7 bits (239), Expect = 9e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|12342|emb|CAA29900.1| unnamed protein product [Triticum aestivum] Length = 176 Score = 96.7 bits (239), Expect = 9e-19, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F L + + TI+YP+EK T RFRG +CIAC++C +CP Sbjct: 24 IGQSFITTLSHTNRLPITIHYPYEKSITPERFRGRIHFEFD-----KCIACEVCVGVCPI 78 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ ++ + Y ID CI+CG C E CP + +E +T R EL Sbjct: 79 DLPVVDWRFEKDIKKKQLLNYSIDFGVCIFCGNCVEYCPTSCLSMTEEYELSTYDRHELN 138 Query: 136 YD 137 Y+ Sbjct: 139 YN 140 >gi|325610555|gb|ADZ36496.1| NADH dehydrogenase 18 kDa subunit [Stewartia pseudocamellia] gi|325610590|gb|ADZ36526.1| NADH dehydrogenase 18 kDa subunit [Stewartia sinensis] Length = 167 Score = 96.7 bits (239), Expect = 9e-19, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFIITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E + R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSAYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|302553482|ref|ZP_07305824.1| NADH-plastoquinone oxidoreductase, I subunit [Streptomyces viridochromogenes DSM 40736] gi|302471100|gb|EFL34193.1| NADH-plastoquinone oxidoreductase, I subunit [Streptomyces viridochromogenes DSM 40736] Length = 183 Score = 96.7 bits (239), Expect = 9e-19, Method: Composition-based stats. Identities = 41/139 (29%), Positives = 56/139 (40%), Gaps = 14/139 (10%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + LR K T YP + PR RG L EE C C LC C Sbjct: 7 SGLAKGLAVTLRTMTKKSVTAQYPDAQPDLPPRTRGVIGLF-----EENCTVCMLCAREC 61 Query: 74 PAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 P I I+S R+ ID C+YCG+C E CP DA+ P F Sbjct: 62 PDWCIYIDSHKETVPAATPGGRERSRNVLDRFAIDFSLCMYCGICIEVCPFDALFWSPEF 121 Query: 125 EFATETRQELYYDKERLLN 143 E+A ++L +++++L Sbjct: 122 EYAETDIRDLTHERDKLRE 140 >gi|114329711|ref|YP_740531.1| NADH-plastoquinone oxidoreductase subunit I [Citrus sinensis] gi|122166137|sp|Q09MC2|NDHI_CITSI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|113952677|gb|ABI49075.1| NADH-plastoquinone oxidoreductase subunit I [Citrus sinensis] Length = 167 Score = 96.7 bits (239), Expect = 9e-19, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + TI YP+EK S RFRG +CIAC++C +CP Sbjct: 22 IGQSFMITLSQANRLPVTIQYPYEKLIPSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E AT R EL Sbjct: 77 DLPVVDWKFETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELATYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|309812472|ref|ZP_07706227.1| 4Fe-4S binding domain protein [Dermacoccus sp. Ellin185] gi|308433777|gb|EFP57654.1| 4Fe-4S binding domain protein [Dermacoccus sp. Ellin185] Length = 211 Score = 96.7 bits (239), Expect = 9e-19, Method: Composition-based stats. Identities = 43/138 (31%), Positives = 58/138 (42%), Gaps = 14/138 (10%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 ++ + R K + YP K PR RG AL EE C AC LC Sbjct: 40 IRGLLAGMRTTARTMTKKTSVQQYPDVKPDLPPRSRGVIALL-----EENCTACMLCARE 94 Query: 73 CPAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 CP + I+S R+ ID C+YCG+C E CP DA+ P Sbjct: 95 CPDWCLYIDSHKETVPSETPGGRDRQRNVVDRFAIDFSLCMYCGICIEVCPFDALFWSPE 154 Query: 124 FEFATETRQELYYDKERL 141 FE+AT ++L +K+ L Sbjct: 155 FEYATNDIRDLLQEKDEL 172 >gi|226227801|ref|YP_002761907.1| NADH-quinone oxidoreductase chain I [Gemmatimonas aurantiaca T-27] gi|226090992|dbj|BAH39437.1| NADH-quinone oxidoreductase chain I [Gemmatimonas aurantiaca T-27] Length = 185 Score = 96.7 bits (239), Expect = 9e-19, Method: Composition-based stats. Identities = 46/156 (29%), Positives = 76/156 (48%), Gaps = 18/156 (11%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLC----LRYFF------KAKTTINYPFEKG-STSPRFRG 49 M ++ +L E + + LR + T YP E+ +PR RG Sbjct: 1 MTLWERA----YLPEVLRGLAITTGVFLRNMGKWITGRRGAVTTYYPEERRADFAPRNRG 56 Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESG--PRCHDGTRRTVRYDIDMIKCIYCG 107 +H L + P+G +CIAC +C +CPA+ I IE G + VR++ID +C++CG Sbjct: 57 KHVLTQRPDGSVQCIACNMCATVCPAKVIEIEPGFDMNDPAHPKYPVRFEIDYSRCVFCG 116 Query: 108 LCQEACPVDAIVEGPNF-EFATETRQELYYDKERLL 142 +C EACP DAI P+ ++ R ++ + ++ Sbjct: 117 MCVEACPEDAIRMEPDVPNLVSDDRYNMWITMDEMM 152 >gi|302559057|ref|ZP_07311399.1| NADH-quinone oxidoreductase subunit I 2 [Streptomyces griseoflavus Tu4000] gi|302476675|gb|EFL39768.1| NADH-quinone oxidoreductase subunit I 2 [Streptomyces griseoflavus Tu4000] Length = 183 Score = 96.7 bits (239), Expect = 9e-19, Method: Composition-based stats. Identities = 41/139 (29%), Positives = 56/139 (40%), Gaps = 14/139 (10%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + LR K T YP + PR RG L EE C C LC C Sbjct: 7 SGLAKGLAVTLRTMTKKSVTAPYPDTQPDLPPRTRGVIGLF-----EENCTVCMLCAREC 61 Query: 74 PAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 P I I+S R+ ID C+YCG+C E CP DA+ P F Sbjct: 62 PDWCIYIDSHKETVPAAAPGGRDRSRNVLDRFAIDFSLCMYCGICIEVCPFDALFWSPEF 121 Query: 125 EFATETRQELYYDKERLLN 143 E+A ++L +++++L Sbjct: 122 EYAETDIRDLTHERDKLRE 140 >gi|194033200|ref|YP_002000539.1| NADH dehydrogenase subunit I [Brachypodium distachyon] gi|193075608|gb|ACF08691.1| NADH dehydrogenase 18kDa subunit [Brachypodium distachyon] Length = 180 Score = 96.7 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F L + + TI+YP+EK T RFRG +CIAC++C +CP Sbjct: 22 IGQSFITTLSHTNRLPITIHYPYEKSITPERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ ++ + Y ID CI+CG C E CP + +E +T R EL Sbjct: 77 DLPIVDWRFEKAVKRKQLLNYSIDFGVCIFCGNCVEYCPTSCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|84494889|ref|ZP_00994008.1| NADH dehydrogenase subunit [Janibacter sp. HTCC2649] gi|84384382|gb|EAQ00262.1| NADH dehydrogenase subunit [Janibacter sp. HTCC2649] Length = 184 Score = 96.7 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 44/138 (31%), Positives = 56/138 (40%), Gaps = 14/138 (10%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 L + + K T YP PR RG AL EE C +C LC Sbjct: 10 LPGILKGLATTAKTAMKPVHTHEYPDVAPDLPPRSRGVIALL-----EENCTSCMLCARE 64 Query: 73 CPAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 CP I IES + ID C+YCG+C E CP DA+ P Sbjct: 65 CPDWCIYIESHKETIPATTEGGRERQRNVLDDFSIDFSLCMYCGICIEVCPFDALFWSPQ 124 Query: 124 FEFATETRQELYYDKERL 141 FE+A + +L +DK+RL Sbjct: 125 FEYAETSILDLLHDKDRL 142 >gi|149390595|ref|YP_001294239.1| NADH-plastoquinone oxidoreductase subunit I [Buxus microphylla] gi|156632607|sp|A6MM91|NDHI_BUXMI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|146762340|gb|ABQ45304.1| NADH-plastoquinone oxidoreductase subunit I [Buxus microphylla] Length = 182 Score = 96.3 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 59/122 (48%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFMITLSHTNRLPVTIQYPYEKLLTSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETYIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|328884359|emb|CCA57598.1| NADH-ubiquinone oxidoreductase chain I [Streptomyces venezuelae ATCC 10712] Length = 186 Score = 96.3 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 42/139 (30%), Positives = 55/139 (39%), Gaps = 14/139 (10%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + LR K T YP + PR RG L EE C C LC C Sbjct: 7 SGLAKGLAVTLRTMTKKTVTAQYPDVQPELPPRTRGVIGLF-----EENCTVCMLCAREC 61 Query: 74 PAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 P I I+S R+ ID C+YCG+C E CP DA+ P F Sbjct: 62 PDWCIYIDSHKETVPAAVPGGRERSRNVLDRFAIDFSLCMYCGICIEVCPFDALFWSPEF 121 Query: 125 EFATETRQELYYDKERLLN 143 E+A EL +++++L Sbjct: 122 EYAETDIHELTHERDKLRE 140 >gi|325126919|ref|YP_004286156.1| NADH-plastoquinone oxidoreductase subunit I [Fragaria vesca subsp. vesca] gi|324022831|gb|ADY15405.1| NADH-plastoquinone oxidoreductase subunit I [Fragaria vesca subsp. vesca] Length = 167 Score = 96.3 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK T+ RFRG +CIAC++C +CP Sbjct: 22 IGQSFIITLSHANRLPVTIQYPYEKLITAERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|290489760|gb|ADD31287.1| NADH-plastoquinone oxidoreductase subunit I protein [Lonicera japonica] Length = 165 Score = 96.3 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFTITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E + R EL Sbjct: 77 DLPIVDWKLETDIRKKRLLNYSIDFGICIFCGNCIEYCPTNCLSMTEEYELSVYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|118430357|ref|YP_874791.1| NADH-plastoquinone oxidoreductase subunit I [Agrostis stolonifera] gi|125952727|sp|A1EA63|NDHI_AGRST RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|118201266|gb|ABK79635.1| NADH-plastoquinone oxidoreductase subunit I [Agrostis stolonifera] Length = 180 Score = 96.3 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F L + + TI+YP+EK T RFRG +CIAC++C +CP Sbjct: 22 IGQSFITTLSHTNRLPITIHYPYEKSITPERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ ++ + Y ID CI+CG C E CP + +E +T R EL Sbjct: 77 DLPVVDWRFEKDIKRKQLLNYSIDFGVCIFCGNCVEYCPTSCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|255961435|ref|YP_003097630.1| NADH-plastoquinone oxidoreductase subunit I [Dendrocalamus latiflorus] gi|255040312|gb|ACT99972.1| NADH-plastoquinone oxidoreductase subunit I [Dendrocalamus latiflorus] Length = 180 Score = 96.3 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI+YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFIITLSHTNRLPITIHYPYEKSITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ ++ + Y ID CI+CG C E CP + +E +T R EL Sbjct: 77 DLPLVDWRFEKDIKRKQLLNYSIDFGVCIFCGNCVEYCPTSCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|289065143|ref|YP_003434029.1| NADH-plastoquinone oxidoreductase subunit I [Typha latifolia] gi|281371826|gb|ADA63753.1| NADH-plastoquinone oxidoreductase subunit I [Typha latifolia] Length = 180 Score = 96.3 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK T+ RFRG +CIAC++C +CP Sbjct: 22 IGQSFIITLSHTNRLPVTIQYPYEKSITTERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ ++ + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWRFEKDIKKKQLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|225155891|ref|ZP_03724376.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Opitutaceae bacterium TAV2] gi|224803344|gb|EEG21582.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Opitutaceae bacterium TAV2] Length = 223 Score = 96.3 bits (238), Expect = 1e-18, Method: Composition-based stats. Identities = 38/145 (26%), Positives = 63/145 (43%), Gaps = 14/145 (9%) Query: 11 LFLKEFVGAFFLCLRYF------FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE--- 61 +F + + + F + TT+ YP ++ + FR L + Sbjct: 1 MFGTGILKGLVVTAKNFAGSYHDPRRLTTVQYPEQRTTLPENFRSFPFLVFDEIEGKSPI 60 Query: 62 ---RCIACKLCEAICPAQAITIESGPRCHDGT-RRTVRYDIDMIKCIYCGLCQEACPVDA 117 RC+ACK+CE CP Q I I ++ +DID C+ CGLC E+CP D+ Sbjct: 61 EGLRCVACKICEKECPPQCIYIVPERDEKGKALKKPAIFDIDFSVCMGCGLCAESCPFDS 120 Query: 118 IVEGPNFEFATETR-QELYYDKERL 141 I ++E R ++L +++L Sbjct: 121 IKMDHHYEITANNRYEDLLVHRDQL 145 >gi|253729608|ref|YP_003029793.1| Ndhl [Bambusa oldhamii] gi|246367118|gb|ACS94729.1| Ndhl [Bambusa oldhamii] Length = 180 Score = 95.9 bits (237), Expect = 1e-18, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI+YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFIITLSHTNRLPITIHYPYEKSITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ ++ + Y ID CI+CG C E CP + +E +T R EL Sbjct: 77 DLPLVDWRFEKDIKRKQLLNYSIDFGVCIFCGNCVEYCPTSCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|29831428|ref|NP_826062.1| NADH dehydrogenase I chain I [Streptomyces avermitilis MA-4680] gi|81718086|sp|Q82DT3|NUOI2_STRAW RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName: Full=NADH dehydrogenase I subunit I 2; AltName: Full=NDH-1 subunit I 2 gi|29608543|dbj|BAC72597.1| putative NADH dehydrogenase I chain I (complex I) [Streptomyces avermitilis MA-4680] Length = 216 Score = 95.9 bits (237), Expect = 1e-18, Method: Composition-based stats. Identities = 42/139 (30%), Positives = 55/139 (39%), Gaps = 14/139 (10%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + LR K T YP + PR RG L EE C C LC C Sbjct: 7 SGLAKGLAVTLRTMTKKTVTAQYPDAQPELPPRSRGVIGLF-----EENCTVCMLCAREC 61 Query: 74 PAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 P I I+S R+ ID C+YCG+C E CP DA+ P F Sbjct: 62 PDWCIYIDSHKETVPPAAPGGRERSRNVLDRFAIDFSLCMYCGICIEVCPFDALFWSPEF 121 Query: 125 EFATETRQELYYDKERLLN 143 E+A EL +++++L Sbjct: 122 EYAETDIHELTHERDKLRE 140 >gi|257387968|ref|YP_003177741.1| NADH-quinone oxidoreductase, chain I [Halomicrobium mukohataei DSM 12286] gi|257170275|gb|ACV48034.1| NADH-quinone oxidoreductase, chain I [Halomicrobium mukohataei DSM 12286] Length = 153 Score = 95.9 bits (237), Expect = 1e-18, Method: Composition-based stats. Identities = 47/130 (36%), Positives = 71/130 (54%), Gaps = 11/130 (8%) Query: 13 LKEFVGAFFLCLRYFF-KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71 + + + +++ T++YP E SPRFRG H +ERCI C+ CE Sbjct: 1 MIGILKSMATTMKHALDGETFTVSYPEEVPEVSPRFRGVHKF-----SQERCIWCRQCEN 55 Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 +CP I I + + R +Y++ + +CIYC LC+E CPVDAI+ NFEF +T+ Sbjct: 56 VCPNNTIQIVTDDQ-----RNGEQYNLHIGQCIYCRLCEEVCPVDAILLTQNFEFTADTK 110 Query: 132 QELYYDKERL 141 E Y+KE+L Sbjct: 111 DEFAYNKEQL 120 >gi|290489786|gb|ADD31300.1| NADH-plastoquinone oxidoreductase subunit I protein [Oxalis latifolia] Length = 167 Score = 95.9 bits (237), Expect = 1e-18, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFMIALSHANRLPVTIQYPYEKLITSDRFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKFETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|115528430|gb|AAI19754.1| NDUFS8 protein [Homo sapiens] Length = 64 Score = 95.9 bits (237), Expect = 1e-18, Method: Composition-based stats. Identities = 48/64 (75%), Positives = 54/64 (84%) Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 M KCIYCG CQEACPVDAIVEGPNFEF+TET +EL Y+KE+LLNNGD+WE+EI NI D Sbjct: 1 MTKCIYCGFCQEACPVDAIVEGPNFEFSTETHEELLYNKEKLLNNGDKWEAEIAANIQAD 60 Query: 160 SPYR 163 YR Sbjct: 61 YLYR 64 >gi|115531975|ref|YP_784131.1| NADH-plastoquinone oxidoreductase subunit 8 [Pelargonium x hortorum] gi|122164264|sp|Q06FQ0|NDHI_PELHO RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|112382129|gb|ABI17322.1| NADH-plastoquinone oxidoreductase subunit 8 [Pelargonium x hortorum] Length = 167 Score = 95.9 bits (237), Expect = 1e-18, Method: Composition-based stats. Identities = 39/126 (30%), Positives = 59/126 (46%), Gaps = 5/126 (3%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSLIITLSHSNRFPVTIQYPYEKLMTSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKFERDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YDKERL 141 Y++ L Sbjct: 137 YNQTAL 142 >gi|11467259|ref|NP_043091.1| NADH dehydrogenase subunit I [Zea mays] gi|1171861|sp|P46722|NDHI_MAIZE RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|902288|emb|CAA60352.1| NADH dehydrogenase subunit [Zea mays] Length = 180 Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI+YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFIITLSHTNRLPITIHYPYEKSITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ ++ + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPLVDWRFEKDIKRKQLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|150004309|ref|YP_001299053.1| NADH dehydrogenase I chain I [Bacteroides vulgatus ATCC 8482] gi|212693815|ref|ZP_03301943.1| hypothetical protein BACDOR_03336 [Bacteroides dorei DSM 17855] gi|237709343|ref|ZP_04539824.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|237724577|ref|ZP_04555058.1| conserved hypothetical protein [Bacteroides sp. D4] gi|265755019|ref|ZP_06089933.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|294776880|ref|ZP_06742343.1| 4Fe-4S binding domain protein [Bacteroides vulgatus PC510] gi|319644244|ref|ZP_07998757.1| hypothetical protein HMPREF9011_04360 [Bacteroides sp. 3_1_40A] gi|149932733|gb|ABR39431.1| NADH dehydrogenase I chain I [Bacteroides vulgatus ATCC 8482] gi|212663704|gb|EEB24278.1| hypothetical protein BACDOR_03336 [Bacteroides dorei DSM 17855] gi|229437136|gb|EEO47213.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] gi|229456728|gb|EEO62449.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|263234630|gb|EEZ20209.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|294449356|gb|EFG17893.1| 4Fe-4S binding domain protein [Bacteroides vulgatus PC510] gi|317384235|gb|EFV65207.1| hypothetical protein HMPREF9011_04360 [Bacteroides sp. 3_1_40A] Length = 150 Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 45/131 (34%), Positives = 59/131 (45%), Gaps = 6/131 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEK--GSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + + R FF K T YP + SPRFRG + NG +CIAC LC+ C Sbjct: 19 LLTGMKVTGREFFTPKVTEQYPENRATLKISPRFRGRLIMPVDENGNNKCIACGLCQMAC 78 Query: 74 PAQAITIESG----PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 P ITI S + V+Y+ D+ C++C LC ACP DAI FE A Sbjct: 79 PNDTITITSESVTNEETGKKKKILVKYEYDLGACMFCQLCVNACPHDAIRFDTEFENAVF 138 Query: 130 TRQELYYDKER 140 R +L + Sbjct: 139 DRSKLVLTLNK 149 >gi|313126882|ref|YP_004037152.1| NADH-quinone oxidoreductase, chain i [Halogeometricum borinquense DSM 11551] gi|312293247|gb|ADQ67707.1| NADH-quinone oxidoreductase, chain I [Halogeometricum borinquense DSM 11551] Length = 153 Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 46/130 (35%), Positives = 68/130 (52%), Gaps = 11/130 (8%) Query: 13 LKEFVGAFFLCLRYFF-KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71 + + + +++ T+ YP SPRFRG H +ERCI C+ CE Sbjct: 1 MIGLLKSMATTMKHALDGETFTVEYPDVAPEVSPRFRGVHKF-----SQERCIWCRQCEN 55 Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 +CP I I + R +Y++ + +CIYC LC+E CPVDAI+ NFEF +T+ Sbjct: 56 VCPNDTIQIVQDDQ-----RNGEQYNLHIGQCIYCRLCEEVCPVDAILLTQNFEFTADTK 110 Query: 132 QELYYDKERL 141 E Y+KE+L Sbjct: 111 DEFVYNKEQL 120 >gi|290489778|gb|ADD31296.1| NADH-plastoquinone oxidoreductase subunit I protein [Ficus sp. Moore 315] Length = 166 Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK + RFRG +CIAC++C +CP Sbjct: 22 IGQSFMITLSHVNRLPITIQYPYEKVIATERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 I+ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVIDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|46805102|dbj|BAD17341.1| rice chloroplast 18kDa protein related to a subunit of NADH dehydrogenase [Oryza sativa Japonica Group] Length = 180 Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI+YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFIITLSHTNRLPITIHYPYEKSITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ ++ + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPLVDWRFEKDIKRKQLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|309322123|ref|YP_003933939.1| NADH-plastoquinone oxidoreductase subunit I [Erodium texanum] gi|197131380|gb|ACH47208.1| NADH-plastoquinone oxidoreductase subunit I [Erodium texanum] gi|300069216|gb|ADJ66338.1| NADH-plastoquinone oxidoreductase subunit I [Erodium texanum] Length = 171 Score = 95.9 bits (237), Expect = 2e-18, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + L + + TI YP+EK TS R RG +CIAC++C +CP Sbjct: 22 IGQSLMITLSHANRFPVTIQYPYEKLITSERVRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + +R Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKFQTDIRKKRLFNYSIDFGICIFCGNCVEYCPTNCLAMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|159106918|ref|YP_001531336.1| NADH-plastoquinone oxidoreductase subunit I [Lolium perenne] gi|158934452|emb|CAO86030.1| NADH-plastoquinone oxidoreductase subunit I [Lolium perenne] Length = 180 Score = 95.6 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F L + + TI+YP+EK T RFRG +CIAC++C +CP Sbjct: 22 IGQSFITTLSHTNRLPITIHYPYEKSITPERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + ++ + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPLVDWRFKKDIKRKQLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|290790889|gb|ADD63145.1| NADH-plastoquinone oxidoreductase subunit I [Microlaena stipoides] Length = 180 Score = 95.6 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI+YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFIITLSHTNRLPITIHYPYEKSITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ ++ + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPLVDWRFEKDIKRKQLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|50234042|ref|YP_052819.1| NADH dehydrogenase subunit I [Oryza nivara] gi|109156637|ref|YP_654256.1| NADH dehydrogenase subunit I [Oryza sativa Indica Group] gi|68565729|sp|Q6ENA3|NDHI_ORYNI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|148887177|sp|P0C384|NDHI_ORYSA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|148887178|sp|P0C385|NDHI_ORYSI RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|148887179|sp|P0C386|NDHI_ORYSJ RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|42795529|gb|AAS46096.1| NADH dehydrogenase subunit I [Oryza sativa Indica Group] gi|42795595|gb|AAS46161.1| NADH dehydrogenase subunit I [Oryza sativa Japonica Group] gi|42795659|gb|AAS46224.1| NADH dehydrogenase subunit I [Oryza sativa Japonica Group] gi|49615066|dbj|BAD26849.1| NADH dehydrogenase subunit I [Oryza nivara] gi|290790616|gb|ADD62876.1| NADH-plastoquinone oxidoreductase subunit I [Oryza sativa Japonica Group] gi|290790685|gb|ADD62944.1| NADH-plastoquinone oxidoreductase subunit I [Oryza meridionalis] gi|290790754|gb|ADD63012.1| NADH-plastoquinone oxidoreductase subunit I [Oryza australiensis] gi|290790822|gb|ADD63079.1| NADH-plastoquinone oxidoreductase subunit I [Potamophila parviflora] Length = 180 Score = 95.6 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI+YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFIITLSHTNRLPITIHYPYEKSITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ ++ + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPLVDWRFEKDIKRKQLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|309792513|ref|ZP_07686977.1| hypothetical protein OSCT_2928 [Oscillochloris trichoides DG6] gi|308225501|gb|EFO79265.1| hypothetical protein OSCT_2928 [Oscillochloris trichoides DG6] Length = 386 Score = 95.6 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 40/141 (28%), Positives = 53/141 (37%), Gaps = 15/141 (10%) Query: 16 FVGAFFLCLRYF---FKA---------KTTINYPFEKGSTSPRFRGEHALRRYPN-GEER 62 + + ++ F+ TI YP E+ +R L G E Sbjct: 24 LLQGLKVVWDHWIGSFRKNENFSQIHGTFTIEYPDERMKLPQAYRNMPVLIYDDETGHEL 83 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTV--RYDIDMIKCIYCGLCQEACPVDAIVE 120 C AC C CP + I I + G + I+ C+ CGLC EACP DAI Sbjct: 84 CTACYQCARACPPEVIHITQAKDPNTGKMVPASLEFIIEYDACMSCGLCAEACPFDAIKM 143 Query: 121 GPNFEFATETRQELYYDKERL 141 FE AT+ R L K L Sbjct: 144 DHFFELATDDRMGLLQRKADL 164 >gi|296121588|ref|YP_003629366.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Planctomyces limnophilus DSM 3776] gi|296013928|gb|ADG67167.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Planctomyces limnophilus DSM 3776] Length = 176 Score = 95.6 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 41/147 (27%), Positives = 58/147 (39%), Gaps = 12/147 (8%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFF----KAKTTI--NYPFEKGSTSPRFRGEHALR 54 MRI+ NV +L + + +L LR + + T YP + R+RG H Sbjct: 1 MRIWLQNV-WLAVSSVIRGLWLTLRVWLKTYRRPTFTEVYEYPEQPIPLKARYRGFHRF- 58 Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 CI C C CP I I + + ID KC++C LC + CP Sbjct: 59 ----DLTTCIGCDKCAVACPVDCIYINKSRVPGSKGFQVDGFAIDYTKCMFCALCVDPCP 114 Query: 115 VDAIVEGPNFEFATETRQELYYDKERL 141 VD I G N + + R D +L Sbjct: 115 VDCIFMGSNHDLSCYNRDGCVVDYAKL 141 >gi|242910156|ref|YP_002970699.1| NADH-plastoquinone oxidoreductase subunit I [Alsophila spinulosa] gi|218454825|gb|ACK77162.1| NADH-plastoquinone oxidoreductase subunit I [Alsophila spinulosa] Length = 182 Score = 95.6 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 54/122 (44%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK +S RFRG +CIAC++C +CP Sbjct: 22 IGQGFAVTLDHLNRLPITIQYPYEKIVSSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ ++ Y D CI+ G C E CP + + +E ++ R EL Sbjct: 77 NLPVVDWKLIKSIRKKQLKSYSTDFGVCIFRGNCVEYCPTNCLSMTEEYELSSYDRHELN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|254883416|ref|ZP_05256126.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|254836209|gb|EET16518.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] Length = 151 Score = 95.6 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 45/131 (34%), Positives = 59/131 (45%), Gaps = 6/131 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEK--GSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + + R FF K T YP + SPRFRG + NG +CIAC LC+ C Sbjct: 20 LLTGMKVTGREFFTPKVTEQYPENRATLKISPRFRGRLIMPVDENGNNKCIACGLCQMAC 79 Query: 74 PAQAITIESG----PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 P ITI S + V+Y+ D+ C++C LC ACP DAI FE A Sbjct: 80 PNDTITITSESVTNEETGKKKKILVKYEYDLGACMFCQLCVNACPHDAIRFDTEFENAVF 139 Query: 130 TRQELYYDKER 140 R +L + Sbjct: 140 DRSKLVLTLNK 150 >gi|114804317|ref|YP_762314.1| NADH-plastoquinone oxidoreductase subunit I [Morus indica] gi|122166757|sp|Q09WW4|NDHI_MORIN RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|78100369|gb|ABB21010.1| NADH-plastoquinone oxidoreductase subunit I [Morus indica] Length = 167 Score = 95.6 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK + RFRG +CIAC++C +CP Sbjct: 22 IGQSFMITLSHVNRLPITIQYPYEKVIAAERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ ++ + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKQLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|11466851|ref|NP_039448.1| NADH dehydrogenase subunit I [Oryza sativa Japonica Group] gi|12054|emb|CAA33909.1| 18kDa protein related to a subunit of NADH dehydroghenase [Oryza sativa Japonica Group] gi|226675|prf||1603356DC NADH dehydrogenase-like 18kD protein Length = 178 Score = 95.6 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 59/122 (48%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI+YP+EK TS RFRG +CIAC++C +CP Sbjct: 20 IGQSFIITLSHTNRLPITIHYPYEKSITSERFRGRIHFEFD-----KCIACEVCVRVCPI 74 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ ++ + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 75 DLPLVDWRFEKDIKRKQLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 134 Query: 136 YD 137 Y+ Sbjct: 135 YN 136 >gi|13518491|ref|NP_084849.1| NADH dehydrogenase subunit I [Lotus japonicus] gi|31563216|sp|Q9BBP0|NDHI_LOTJA RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|13359032|dbj|BAB33249.1| NADH dehydrogenase subunit [Lotus japonicus] Length = 161 Score = 95.6 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + +R + Y ID CI+CG C E CP + + +E + R EL Sbjct: 77 DLPVVDWKLETNIRKKRLLNYSIDFGICIFCGNCIEYCPTNCLSMTEEYELSAYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|311896696|dbj|BAJ29104.1| putative NADH-quinone oxidoreductase subunit I [Kitasatospora setae KM-6054] Length = 192 Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 42/139 (30%), Positives = 57/139 (41%), Gaps = 14/139 (10%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + +R + T YP + PR RG AL EE C C LC C Sbjct: 6 SGLAKGLAVTMRTMMRKTVTAQYPDVQPDLPPRSRGVIALL-----EENCTVCMLCAREC 60 Query: 74 PAQAITIESGPRC---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 P I I+S R+ ID C+YCG+C E CP DA+ P F Sbjct: 61 PDWCIYIDSHKETLPAADPNARARTRNVLDRFAIDFSLCMYCGICVEVCPFDALFWSPEF 120 Query: 125 EFATETRQELYYDKERLLN 143 E+A +EL ++++RL Sbjct: 121 EYAETDIRELTHERDRLRE 139 >gi|332708451|ref|ZP_08428427.1| NADH-plastoquinone oxidoreductase subunit I protein [Lyngbya majuscula 3L] gi|332352782|gb|EGJ32346.1| NADH-plastoquinone oxidoreductase subunit I protein [Lyngbya majuscula 3L] Length = 201 Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 51/122 (41%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + + T+ YP+EK S R+RG +CI+C++C +CP Sbjct: 22 IGQGISVTFDHMQRRPITVQYPYEKLIPSERYRGRIHFEFD-----KCISCEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + Y ID CI+C C E CP + + +E +T R EL Sbjct: 77 NLPVVDYEFDKATKKKNLKHYSIDFGVCIFCANCIEYCPTNCLSATEEYEISTYDRHELN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|261416726|ref|YP_003250409.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261373182|gb|ACX75927.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326992|gb|ADL26193.1| NADH-quinone oxidoreductase, I subunit [Fibrobacter succinogenes subsp. succinogenes S85] Length = 157 Score = 95.2 bits (235), Expect = 3e-18, Method: Composition-based stats. Identities = 41/133 (30%), Positives = 54/133 (40%), Gaps = 7/133 (5%) Query: 14 KEFVGAFFLCLRYFFKAK--TTINYPFEK--GSTSPRFRGEHALRRYPNGEERCIACKLC 69 + + L+YFF K T YP + R+RG + +G C AC +C Sbjct: 23 WSLICGLSVTLKYFFNPKRIVTEQYPENRKTLKMHDRYRGRLEMIEDADGNNHCTACGMC 82 Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 E CP A + G + RY C CGLC EACP AI P FE AT Sbjct: 83 ERACP-NASINVLATKNIAGKKVLGRYVYHFASCTQCGLCVEACPFGAIRMSPAFEVATT 141 Query: 130 TRQEL--YYDKER 140 +L +K+ Sbjct: 142 DPNDLEMILNKKE 154 >gi|261879873|ref|ZP_06006300.1| NADH-ubiquinone oxidoreductase [Prevotella bergensis DSM 17361] gi|270333466|gb|EFA44252.1| NADH-ubiquinone oxidoreductase [Prevotella bergensis DSM 17361] Length = 179 Score = 94.8 bits (234), Expect = 3e-18, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 61/134 (45%), Gaps = 7/134 (5%) Query: 19 AFFLCLRYFFKAKTTINYPFEK---GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 L+ +F K+T YP + SPRFRG +R NG RC+AC +CE CP Sbjct: 22 GLKTTLKEYFTPKSTEQYPENRKTTLHVSPRFRGRLVFKRDENGAHRCVACTMCEKACPN 81 Query: 76 Q----AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 +E+ ++ Y D+ C++C LC AC DAI +FE A R Sbjct: 82 DTIKIMAHMETNEETGRKKKKLDDYQYDLGDCMFCQLCVNACNFDAIEFTNDFEHAVFDR 141 Query: 132 QELYYDKERLLNNG 145 +L ++ + +G Sbjct: 142 SKLVLHLDKEVYDG 155 >gi|118576848|ref|YP_876591.1| NADH-ubiquinone oxidoreductase, subunit I [Cenarchaeum symbiosum A] gi|118195369|gb|ABK78287.1| NADH-ubiquinone oxidoreductase, subunit I [Cenarchaeum symbiosum A] Length = 166 Score = 94.8 bits (234), Expect = 3e-18, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 11/139 (7%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGST--------SPRFRGEHALRRYPN-GEERCI 64 + A +++ + T+ YP EK G L+ + C Sbjct: 6 SGIIKALNSGIKHLAVKRFTLRYPEEKLKFVGDGYQFDPTTGVGIAGLKGRHMLFHDHCT 65 Query: 65 ACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+LC C A+AI++ P ++ + ID KC++CGLC +ACP A+ Sbjct: 66 GCQLCAIACEGIAEAISMVKVPETWKQNKKAIMPQIDYGKCVFCGLCVDACPFYALYMTN 125 Query: 123 NFEFATETRQELYYDKERL 141 ++E ++ T++ L Y +L Sbjct: 126 DYELSSYTKEALIYTPAQL 144 >gi|313156890|gb|EFR56328.1| 4Fe-4S binding domain protein [Alistipes sp. HGB5] Length = 146 Score = 94.8 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 42/145 (28%), Positives = 63/145 (43%), Gaps = 8/145 (5%) Query: 4 FRCNVSFLF--LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFR--GEHALRRYPNG 59 + + F L + + R FF K T YP + + R GE + G Sbjct: 1 MKSYIKGFFHGLGSLLTGLKVTGREFFTPKVTEQYPENRATLRMFDRFCGELTMPHDAEG 60 Query: 60 EERCIACKLCEAICPAQAIT----IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 +CIAC LC++ CP I + + P +R V Y+ D+ C++C LC ACP Sbjct: 61 RNKCIACGLCQSACPNGTIRITTEMVADPETGKSRKRLVLYEYDLGACMFCRLCVNACPT 120 Query: 116 DAIVEGPNFEFATETRQELYYDKER 140 AI +FE A TR++L + Sbjct: 121 GAIRFSTDFEHAVYTREKLVKTLNK 145 >gi|283795022|ref|YP_003359413.1| NADH dehydrogenase 18 kDa subunit [Olea europaea] gi|281428741|gb|ADA69980.1| NADH dehydrogenase 18 kDa subunit [Olea europaea] Length = 168 Score = 94.8 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 39/123 (31%), Positives = 55/123 (44%), Gaps = 6/123 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 19 IGQGFMITLSHVNRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 73 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP-VDAIVEGPNFEFATETRQEL 134 ++ +R + Y ID CI+CG C E CP +E +T R EL Sbjct: 74 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPNKIVYQMTEEYELSTYNRHEL 133 Query: 135 YYD 137 Y+ Sbjct: 134 NYN 136 >gi|292559560|ref|YP_003540987.1| NADH-plastoquinone oxidoreductase subunit I [Phoenix dactylifera] gi|156598105|gb|ABU85318.1| NADH-plastoquinone oxidoreductase subunit I [Elaeis oleifera] gi|290790968|gb|ADD63223.1| NADH-plastoquinone oxidoreductase subunit I [Phoenix dactylifera] gi|294620633|gb|ADF28202.1| NADH-plastoquinone oxidoreductase subunit I [Phoenix dactylifera] Length = 180 Score = 94.8 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFVITLSHTNRLPITIQYPYEKSITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ ++ + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWRFERDIKKKQLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTSDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|320529344|ref|ZP_08030432.1| 4Fe-4S binding domain protein [Selenomonas artemidis F0399] gi|320138310|gb|EFW30204.1| 4Fe-4S binding domain protein [Selenomonas artemidis F0399] Length = 228 Score = 94.8 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 5/127 (3%) Query: 11 LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70 +F K + + ++ + K T YP EK + FRG + CI C +C Sbjct: 1 MFGKGLLTGMSVTWKHLWGKKETFCYPEEKLPMTENFRGGN----LAMDWRVCIGCSMCA 56 Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 CP +A+ + R Y +C+YC LC E CPV +V ++ +T + Sbjct: 57 NACPNKALDLTIVQDAK-KKRHMQYYIHKSGRCLYCNLCVEVCPVKTLVWDKDYAISTWS 115 Query: 131 RQELYYD 137 ++ + +D Sbjct: 116 KETMTHD 122 >gi|168188278|gb|ACA14528.1| NADH dehydrogenase subunit I [Felicia heterophylla] Length = 166 Score = 94.4 bits (233), Expect = 4e-18, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + T+ YP++K TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFIITLSHANRLPVTVQYPYKKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 NLPVVDWKLETDIKKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEKYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|295136963|ref|YP_003587797.1| NADH dehydrogenase subunit I [Lathyrus sativus] gi|293338685|gb|ADE43657.1| NADH dehydrogenase subunit I [Lathyrus sativus] Length = 166 Score = 94.4 bits (233), Expect = 4e-18, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFMIILSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKMETDIRKKRLLNYSIDFGICIFCGNCIEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|258592364|emb|CBE68673.1| putative 4Fe-4S ferredoxin iron-sulfur binding domain protein precursor [NC10 bacterium 'Dutch sediment'] Length = 176 Score = 94.4 bits (233), Expect = 4e-18, Method: Composition-based stats. Identities = 40/131 (30%), Positives = 59/131 (45%), Gaps = 4/131 (3%) Query: 15 EFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPN-GEERCIACKLCEAIC 73 + + + LRY F T+ YP E+ R H LR G+ +C AC+ C IC Sbjct: 14 SILRSMKVTLRYLFTRAITVQYPDEQRPQPLRALNRHVLRIDETTGQLKCTACEACARIC 73 Query: 74 PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE-GPNFEFATETRQ 132 P + I + + + R + ID C+YC LC E CP DAI E +++ R Sbjct: 74 PTRCIELTGTGKGKN--RHPSAFTIDHNLCMYCNLCVEVCPFDAITMWTRIGELSSDARS 131 Query: 133 ELYYDKERLLN 143 L +D + L Sbjct: 132 GLVFDLKALTA 142 >gi|238007148|gb|ACR34609.1| unknown [Zea mays] Length = 64 Score = 94.4 bits (233), Expect = 5e-18, Method: Composition-based stats. Identities = 49/64 (76%), Positives = 55/64 (85%) Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 M KCIYCG CQEACPVDAIVEGPNFEFATET +EL YDKE+LL NGDRWE+EI N+ ++ Sbjct: 1 MTKCIYCGFCQEACPVDAIVEGPNFEFATETHEELLYDKEKLLENGDRWETEIAENLRSE 60 Query: 160 SPYR 163 S YR Sbjct: 61 SLYR 64 >gi|94265856|ref|ZP_01289586.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium MLMS-1] gi|93453592|gb|EAT03988.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium MLMS-1] Length = 148 Score = 94.4 bits (233), Expect = 5e-18, Method: Composition-based stats. Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 2/126 (1%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE--ERCIACKLCEA 71 K V + RY + T+ YP + +PR+RG L E +CIAC +C+ Sbjct: 13 KSLVVGLGITFRYMIQPVVTLQYPRQTVKMAPRYRGHIDLIFDAEAESGNKCIACGMCQR 72 Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 CP+ IT++S + Y +D KC CGLC E+CP DA+ + A Sbjct: 73 NCPSDCITLKSEKPEGAKKKVLTGYQLDFTKCSLCGLCVESCPTDALEFSKEYNLAGLKA 132 Query: 132 QELYYD 137 ++ +D Sbjct: 133 EDYVFD 138 >gi|289829692|ref|ZP_06547233.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] Length = 132 Score = 94.4 bits (233), Expect = 5e-18, Method: Composition-based stats. Identities = 42/94 (44%), Positives = 56/94 (59%), Gaps = 1/94 (1%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 L R P+GEERC+AC LC CP I+++ DG + I+ +CI+CGLC+E Sbjct: 1 MLTRDPDGEERCVACNLCAVACPVGCISLQKAE-TKDGRWYPEFFRINFSRCIFCGLCEE 59 Query: 112 ACPVDAIVEGPNFEFATETRQELYYDKERLLNNG 145 ACP AI P+FE RQ+L Y+KE LL +G Sbjct: 60 ACPTTAIQLTPDFELGEYKRQDLVYEKEDLLISG 93 >gi|295137002|ref|YP_003587549.1| NADH dehydrogenase subunit I [Pisum sativum] gi|293338574|gb|ADE43547.1| NADH dehydrogenase subunit I [Pisum sativum] Length = 166 Score = 94.0 bits (232), Expect = 6e-18, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFMIILSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKMETDIRKKRLLNYSIDFGICIFCGNCIEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|21954438|emb|CAD12667.1| electron-transferring-flavoprotein dehydrogenase subunit [Hortaea werneckii] Length = 64 Score = 94.0 bits (232), Expect = 6e-18, Method: Composition-based stats. Identities = 44/64 (68%), Positives = 52/64 (81%) Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 M KCIYCG CQE+CPVDAIVEGPN E+ATETR+EL Y+KE+LL NGD+WE E+ D Sbjct: 1 MTKCIYCGFCQESCPVDAIVEGPNAEYATETREELLYNKEKLLANGDKWEPELAAIARAD 60 Query: 160 SPYR 163 +PYR Sbjct: 61 APYR 64 >gi|309322199|ref|YP_003934114.1| NADH-plastoquinone oxidoreductase subunit I [Geranium palmatum] gi|197131386|gb|ACH47211.1| NADH-plastoquinone oxidoreductase subunit I [Geranium palmatum] gi|300069292|gb|ADJ66413.1| NADH-plastoquinone oxidoreductase subunit I [Geranium palmatum] Length = 173 Score = 94.0 bits (232), Expect = 6e-18, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 56/119 (47%), Gaps = 5/119 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFMITLSHANRFPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134 + ++ +R Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 ELPVVDWKFETDIRKKRLFNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHEL 135 >gi|219674000|ref|YP_002456484.1| NADH-plastoquinone oxidoreductase subunit I [Trifolium subterraneum] gi|193788969|gb|ACF20565.1| NADH-plastoquinone oxidoreductase subunit I [Trifolium subterraneum] Length = 162 Score = 94.0 bits (232), Expect = 6e-18, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFMIILSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCIEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|284164399|ref|YP_003402678.1| NADH-quinone oxidoreductase, chain I [Haloterrigena turkmenica DSM 5511] gi|284014054|gb|ADB60005.1| NADH-quinone oxidoreductase, chain I [Haloterrigena turkmenica DSM 5511] Length = 153 Score = 94.0 bits (232), Expect = 7e-18, Method: Composition-based stats. Identities = 44/130 (33%), Positives = 71/130 (54%), Gaps = 11/130 (8%) Query: 13 LKEFVGAFFLCLRYFF-KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71 + + + +++ + T+ YP SPRFRG H +ERCI C+ CE Sbjct: 1 MIGILKSMATTMKHALDGSTFTVEYPETAPDVSPRFRGVHKF-----SQERCIWCRQCEN 55 Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 +CP I I + + R+ +Y++ + +C+YC LC+E CPVDAI+ NFEF +T+ Sbjct: 56 VCPNDTIQIVTNDQ-----RQGEQYNLHIGQCVYCRLCEEVCPVDAILLTQNFEFTADTK 110 Query: 132 QELYYDKERL 141 + Y+KE+L Sbjct: 111 HDFVYNKEQL 120 >gi|309322279|ref|YP_003934357.1| NADH-plastoquinone oxidoreductase subunit I [Monsonia speciosa] gi|197131388|gb|ACH47212.1| NADH-plastoquinone oxidoreductase subunit I [Monsonia speciosa] gi|300069372|gb|ADJ66492.1| NADH-plastoquinone oxidoreductase subunit I [Monsonia speciosa] Length = 175 Score = 94.0 bits (232), Expect = 7e-18, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSLMITLLHTNRFPITIQYPYEKFITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPLVDWKFESDIRKKGLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|197131384|gb|ACH47210.1| NADH-plastoquinone oxidoreductase subunit I [Geranium macrorrhizum] Length = 173 Score = 93.6 bits (231), Expect = 7e-18, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 56/119 (47%), Gaps = 5/119 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFMITLSHANRFPVTIQYPYEKLITSGRFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134 + ++ +R Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 ELPVVDWKFETDIRKKRLFNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSTYDRHEL 135 >gi|325857154|ref|ZP_08172444.1| 4Fe-4S binding domain protein [Prevotella denticola CRIS 18C-A] gi|327313382|ref|YP_004328819.1| 4Fe-4S binding domain-containing protein [Prevotella denticola F0289] gi|325483217|gb|EGC86195.1| 4Fe-4S binding domain protein [Prevotella denticola CRIS 18C-A] gi|326944442|gb|AEA20327.1| 4Fe-4S binding domain protein [Prevotella denticola F0289] Length = 178 Score = 93.6 bits (231), Expect = 7e-18, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 59/135 (43%), Gaps = 7/135 (5%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEK---GSTSPRFRGEHALRRYPNGEERCIACKLC 69 LK + ++ +F K+T YP + + R RG +R G +C +C +C Sbjct: 16 LKTLATGMKVTMKEYFTPKSTEQYPENRKTTLHVAKRHRGRLVFKRDEEGNYKCTSCTMC 75 Query: 70 EAICPAQ----AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 E CP A + + P ++ + Y D+ C++C LC AC DAI +FE Sbjct: 76 EKACPNGTIKIASEMVTNPETGRKKKQLLDYQYDLGDCMFCELCVNACNFDAIEFTNDFE 135 Query: 126 FATETRQELYYDKER 140 A R +L ++ Sbjct: 136 NAVFDRSKLVLHLDK 150 >gi|325269274|ref|ZP_08135892.1| NADH-quinone oxidoreductase subunit I [Prevotella multiformis DSM 16608] gi|324988401|gb|EGC20366.1| NADH-quinone oxidoreductase subunit I [Prevotella multiformis DSM 16608] Length = 178 Score = 93.6 bits (231), Expect = 7e-18, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 59/135 (43%), Gaps = 7/135 (5%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEK---GSTSPRFRGEHALRRYPNGEERCIACKLC 69 LK + ++ +F K+T YP + + R RG +R G +C +C +C Sbjct: 16 LKTLATGMKVTMKEYFTPKSTEQYPENRKTTLHVAQRHRGRLVFKRDEEGNYKCTSCTMC 75 Query: 70 EAICPAQ----AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 E CP A + + P ++ + Y D+ C++C LC AC DAI +FE Sbjct: 76 EKACPNGTIKIASEMVTNPETGRKKKQLLDYQYDLGDCMFCELCVNACNFDAIEFTNDFE 135 Query: 126 FATETRQELYYDKER 140 + R +L ++ Sbjct: 136 NSVFDRSKLVLHLDK 150 >gi|197294161|ref|YP_002149781.1| NADH-plastoquinone oxidoreductase subunit I [Cicer arietinum] gi|197089849|gb|ACH41119.1| NADH-plastoquinone oxidoreductase subunit I [Cicer arietinum] Length = 162 Score = 93.6 bits (231), Expect = 8e-18, Method: Composition-based stats. Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK T RFRG +CIAC++C +CP Sbjct: 22 IGQSFVIILSHANRLPVTIQYPYEKLITPERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCIEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|118475180|ref|YP_891369.1| NADH-ubiquinone oxidoreductase subunit 8 [Campylobacter fetus subsp. fetus 82-40] gi|261886061|ref|ZP_06010100.1| NADH-ubiquinone oxidoreductase subunit 8 [Campylobacter fetus subsp. venerealis str. Azul-94] gi|156633515|sp|A0RMD6|NUOI_CAMFF RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|118414406|gb|ABK82826.1| NADH-ubiquinone oxidoreductase subunit 8 [Campylobacter fetus subsp. fetus 82-40] Length = 165 Score = 93.6 bits (231), Expect = 8e-18, Method: Composition-based stats. Identities = 42/148 (28%), Positives = 67/148 (45%), Gaps = 8/148 (5%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTT------INYPFEKG-STSPRFRGEHALR 54 R + ++L R+FF+ + YP +K + R+RG H L Sbjct: 10 RKKIPFLQRIYLPFIFAGMARTFRHFFRNLKDSSNIDFLEYPEQKPTDITNRYRGLHRLT 69 Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + G+ +C+AC +C CPA I I + + ++ ID+++C++CGLC EACP Sbjct: 70 KNEKGDLKCVACDMCATACPANCIFITATEIEGSKEKAPSKFTIDLLECVFCGLCVEACP 129 Query: 115 VDAIVE-GPNFEFATETRQELYYDKERL 141 DAI F TR+ D + L Sbjct: 130 KDAIRMDTGIFTKVGNTRESFLADIKTL 157 >gi|55378233|ref|YP_136083.1| NADH dehydrogenase/oxidoreductase-like protein [Haloarcula marismortui ATCC 43049] gi|55230958|gb|AAV46377.1| NADH dehydrogenase/oxidoreductase-like protein [Haloarcula marismortui ATCC 43049] Length = 153 Score = 93.6 bits (231), Expect = 8e-18, Method: Composition-based stats. Identities = 46/130 (35%), Positives = 67/130 (51%), Gaps = 11/130 (8%) Query: 13 LKEFVGAFFLCLRYFF-KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71 + + + +++ T+ YP SPRFRG H +ERCI C+ CE Sbjct: 1 MIGILKSMATTMKHALDGETFTVEYPDVAPEVSPRFRGVH-----KWSQERCIWCRQCEN 55 Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 +CP I I + R +Y++ + +CIYC LC+E CP DAI+ NFEF +T+ Sbjct: 56 VCPNNTIQIVMDEQ-----RNGEQYNLHIGQCIYCRLCEEVCPTDAILLTQNFEFTADTK 110 Query: 132 QELYYDKERL 141 E YDKE+L Sbjct: 111 DEFAYDKEQL 120 >gi|313895779|ref|ZP_07829333.1| 4Fe-4S binding domain protein [Selenomonas sp. oral taxon 137 str. F0430] gi|312975204|gb|EFR40665.1| 4Fe-4S binding domain protein [Selenomonas sp. oral taxon 137 str. F0430] Length = 218 Score = 93.6 bits (231), Expect = 9e-18, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 5/127 (3%) Query: 11 LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70 +F K + + ++ + K T YP EK + FRG + CI C +C Sbjct: 1 MFGKGLLTGMSVTWKHLWGKKETFCYPEEKLPMTENFRGGN----LAMDWRVCIGCSMCA 56 Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 CP +A+ + R Y +C+YC LC E CPV +V ++ +T + Sbjct: 57 NACPNKALDLTIVQDAK-KKRHMQYYIHKSGRCLYCNLCVEVCPVKTLVWDKDYAISTWS 115 Query: 131 RQELYYD 137 ++ + +D Sbjct: 116 KETMTHD 122 >gi|78043690|ref|YP_360252.1| proton-translocating NADH-quinone oxidoreductase subunit I [Carboxydothermus hydrogenoformans Z-2901] gi|115502524|sp|Q3AC82|NUOI_CARHZ RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|77995805|gb|ABB14704.1| proton-translocating NADH-quinone oxidoreductase, I subunit [Carboxydothermus hydrogenoformans Z-2901] Length = 140 Score = 93.6 bits (231), Expect = 9e-18, Method: Composition-based stats. Identities = 37/124 (29%), Positives = 59/124 (47%), Gaps = 6/124 (4%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + + + +K T+ YP K PRF G L E+CIAC LC+ C Sbjct: 7 TGLLKGLAITFKELWKKPVTLEYPEHKEKLPPRFHGSFTLH-----SEKCIACGLCQQAC 61 Query: 74 PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 P + I + S + R+ Y+++M C++CGLC EACP +A+V +E A ++ Sbjct: 62 PNKVIKVGSIKD-ENNKRKLASYEMEMKYCLFCGLCVEACPTNALVFNQEYELAKYRIED 120 Query: 134 LYYD 137 + Sbjct: 121 IKLT 124 >gi|320352995|ref|YP_004194334.1| NADH dehydrogenase subunit I [Desulfobulbus propionicus DSM 2032] gi|320121497|gb|ADW17043.1| NADH dehydrogenase subunit I [Desulfobulbus propionicus DSM 2032] Length = 151 Score = 93.6 bits (231), Expect = 9e-18, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 55/122 (45%), Gaps = 1/122 (0%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPN-GEERCIACKLCEAI 72 K + + R FFK T YP+E + +P FRG L G C+ C +C+ Sbjct: 13 KSLLTGLAITAREFFKPVVTEQYPWEVPTMTPLFRGHIELIGNEETGAPNCVVCGMCQRA 72 Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 CP+Q I+++ + RY +D KC CG C E+C +A+ + + ++ Sbjct: 73 CPSQCISLDGKKNESGKGKVLTRYVLDFTKCSLCGSCVESCNFNALRFSKEYNLVSFDKK 132 Query: 133 EL 134 + Sbjct: 133 DF 134 >gi|153004151|ref|YP_001378476.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152027724|gb|ABS25492.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Anaeromyxobacter sp. Fw109-5] Length = 284 Score = 93.2 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 45/124 (36%), Gaps = 1/124 (0%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 K F + L + + T+ YP C C+ CE C Sbjct: 17 KSFWQGMSITLSHLLRRPITVQYPDRTPMPVRDMLPPRYRGFLEVDAAICTGCQACERAC 76 Query: 74 PAQAITIESGPRC-HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 P I I + R ++DID KC++CGLC E CP +I FE + + Sbjct: 77 PINCIQITLEKDPTNPKQRVVTQFDIDEAKCMFCGLCVEPCPTGSIQHTREFEGSQRNIR 136 Query: 133 ELYY 136 L + Sbjct: 137 NLTF 140 >gi|153012163|ref|YP_001381678.1| NADH-plastoquinone oxidoreductase subunit I [Medicago truncatula] gi|124360818|gb|ABN08790.1| Alpha-helical ferredoxin [Medicago truncatula] Length = 161 Score = 93.2 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 58/122 (47%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFIIILSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E +T R EL Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCIEYCPTNCLSMTEEYELSTYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|110667600|ref|YP_657411.1| NADH dehydrogenase-like complex, subunit I [Haloquadratum walsbyi DSM 16790] gi|109625347|emb|CAJ51769.1| NADH dehydrogenase-like complex, subunit I [Haloquadratum walsbyi DSM 16790] Length = 153 Score = 93.2 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 45/130 (34%), Positives = 67/130 (51%), Gaps = 11/130 (8%) Query: 13 LKEFVGAFFLCLRYFF-KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71 + + + +++ T+ YP SPRFRG H +ERCI C+ CE Sbjct: 1 MIGLLKSMATTMKHALDGETFTVEYPDVAPEVSPRFRGVHKF-----SQERCIWCRQCEK 55 Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 +CP I I + R +Y++ + +CIYC LC+E CPVDAI+ NFEF +T+ Sbjct: 56 VCPNDTIQIVQDDK-----RNGEQYNLHIGQCIYCRLCEEVCPVDAILLTQNFEFTADTK 110 Query: 132 QELYYDKERL 141 E Y+ E+L Sbjct: 111 DEFVYNMEQL 120 >gi|260592328|ref|ZP_05857786.1| NADH-ubiquinone oxidoreductase, NQO9 subunit [Prevotella veroralis F0319] gi|260535715|gb|EEX18332.1| NADH-ubiquinone oxidoreductase, NQO9 subunit [Prevotella veroralis F0319] Length = 178 Score = 93.2 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 43/154 (27%), Positives = 66/154 (42%), Gaps = 17/154 (11%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEK---GSTSPRFRGEHALRRYPNGEERCIACKLC 69 LK + ++ +F K+T YP + + R RG +R N +C AC +C Sbjct: 16 LKTLATGMKVTMKEYFTPKSTEQYPENRKTTLHVAKRHRGRLVFKRDENENYKCTACTMC 75 Query: 70 EAICPAQ----AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 E CP A + + P ++ + Y D+ C++C LC AC DAI +FE Sbjct: 76 EKACPNGTIKIASEMVTNPETGRKKKQLLDYQYDLGDCMFCELCVNACNFDAIEFTNDFE 135 Query: 126 FATETRQELY--YDKE--------RLLNNGDRWE 149 A R +L DKE +L+ G W+ Sbjct: 136 NAVFDRSKLVLHLDKEIYKGGSLPKLIEGGADWK 169 >gi|282860266|ref|ZP_06269336.1| 4Fe-4S binding domain protein [Prevotella bivia JCVIHMP010] gi|282586940|gb|EFB92175.1| 4Fe-4S binding domain protein [Prevotella bivia JCVIHMP010] Length = 177 Score = 93.2 bits (230), Expect = 1e-17, Method: Composition-based stats. Identities = 42/153 (27%), Positives = 62/153 (40%), Gaps = 16/153 (10%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEK---GSTSPRFRGEHALRRYPNGEERCIACKLC 69 LK + ++ +F K+T YP + S R RG R NG +C +C +C Sbjct: 16 LKTLATGLKVTMKEYFTPKSTEQYPENRKTTLHVSDRHRGRLVFLRDENGNHKCTSCTMC 75 Query: 70 EAICPAQAITIESGPRCHDGTRRTVR---YDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 E CP I I S + ++ Y D+ C++C LC AC AI +FE Sbjct: 76 EKACPNGTIRILSQMVTNAEGKKKKELVDYQYDLGDCMFCSLCTNACNFGAIEFTNDFEN 135 Query: 127 ATETRQELYYDKER----------LLNNGDRWE 149 A R +L ++ L+ G WE Sbjct: 136 AVFDRSKLVLHLDKEVYAGGSLPNLIEGGAAWE 168 >gi|315608357|ref|ZP_07883346.1| NADH-quinone oxidoreductase subunit I [Prevotella buccae ATCC 33574] gi|315249987|gb|EFU29987.1| NADH-quinone oxidoreductase subunit I [Prevotella buccae ATCC 33574] Length = 177 Score = 92.9 bits (229), Expect = 1e-17, Method: Composition-based stats. Identities = 41/135 (30%), Positives = 59/135 (43%), Gaps = 7/135 (5%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEK---GSTSPRFRGEHALRRYPNGEERCIACKLC 69 +K LR +F K+T YP + SPR RG +R N RC+AC +C Sbjct: 15 MKTLAVGMKTTLREYFTPKSTEQYPENRKTTLHLSPRHRGRLVFKRDENENHRCVACTMC 74 Query: 70 EAICPAQA----ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 E CP + + P R+ + Y D+ C++C LC AC DAI +FE Sbjct: 75 EKACPNGTIVLTHEMVADPETGKKKRQLIDYQYDLGDCMFCQLCVNACNFDAIEFTNDFE 134 Query: 126 FATETRQELYYDKER 140 A R +L ++ Sbjct: 135 QAVFDRSKLVLHLDK 149 >gi|289582897|ref|YP_003481363.1| NADH-quinone oxidoreductase, chain I [Natrialba magadii ATCC 43099] gi|289532450|gb|ADD06801.1| NADH-quinone oxidoreductase, chain I [Natrialba magadii ATCC 43099] Length = 153 Score = 92.9 bits (229), Expect = 1e-17, Method: Composition-based stats. Identities = 46/130 (35%), Positives = 70/130 (53%), Gaps = 11/130 (8%) Query: 13 LKEFVGAFFLCLRYFF-KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71 + + + +++ + T+ YP SPRFRG H +ERCI C+ CE Sbjct: 1 MIGVLKSMATTMKHALDGSTFTVEYPTAAPDVSPRFRGVHKF-----SQERCIWCRQCEN 55 Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 +CP I I + R +Y++ + +CIYC LC+E CPVDAI+ NFEF +T+ Sbjct: 56 VCPNDTIQIVMDDK-----RNGEQYNLHIGQCIYCRLCEEVCPVDAILLTQNFEFTGDTK 110 Query: 132 QELYYDKERL 141 +L Y+KE+L Sbjct: 111 HDLVYNKEQL 120 >gi|323702659|ref|ZP_08114320.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfotomaculum nigrificans DSM 574] gi|323532322|gb|EGB22200.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfotomaculum nigrificans DSM 574] Length = 158 Score = 92.9 bits (229), Expect = 1e-17, Method: Composition-based stats. Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 7/123 (5%) Query: 11 LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70 +F + + + L +FF+ T+ YP ++ RF G ++CIAC C Sbjct: 1 MFGEGLLKGLKITLGWFFRKPVTVQYPEQRLPIPDRFFGRPEF-----DYDKCIACNQCV 55 Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 CP + I + + D + YD D C++CG+CQEACP DAI +FE Sbjct: 56 NACPNKVIKLTTE--TVDKKKVVTGYDFDQQYCMFCGMCQEACPKDAIRFTKDFELTKYH 113 Query: 131 RQE 133 R + Sbjct: 114 RPD 116 >gi|332826697|gb|EGJ99519.1| hypothetical protein HMPREF9455_04115 [Dysgonomonas gadei ATCC BAA-286] Length = 236 Score = 92.9 bits (229), Expect = 1e-17, Method: Composition-based stats. Identities = 46/168 (27%), Positives = 65/168 (38%), Gaps = 15/168 (8%) Query: 1 MRIFRCNVSFLF--LKEFVGAFFLCLRYFFKAKTTINYPFEKGS--TSPRFRGEHALRRY 56 M S LF +K + + + K T YP + + RFRGE + Sbjct: 1 MSSVSEYFSGLFGGIKSLLTGMRVTWGELWTKKITEQYPENRATLVIPDRFRGELIMPHD 60 Query: 57 PNGEERCIACKLCEAICPAQAITIES---GPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 N E C AC +C+ CP I + S + RY D+ C +C LC C Sbjct: 61 ENNEHACTACGICQMNCPNGTIQVISKSIETEDGKKKKIIDRYIYDLGMCTFCNLCVITC 120 Query: 114 PVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161 P DAIV FE + TR +L ++L E +R + P Sbjct: 121 PSDAIVFANTFENSLFTRSKLI---QQL-----NHEGSKLREKKKEKP 160 >gi|261416519|ref|YP_003250202.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372975|gb|ACX75720.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Fibrobacter succinogenes subsp. succinogenes S85] Length = 188 Score = 92.9 bits (229), Expect = 1e-17, Method: Composition-based stats. Identities = 47/153 (30%), Positives = 75/153 (49%), Gaps = 12/153 (7%) Query: 1 MRIFRCN----VSFLFLKEFVGAFFLCLRY----FFK--AKTTINYPFEKGSTSPRFRGE 50 MR+ + + L++ E + + L++ F+ TI+YP + +R + Sbjct: 1 MRVIKQKPMTVIERLYIFEAIRGLWTTLKHAARGLFRYEELPTISYPEGQPEIRNTYRAK 60 Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGP-RCHDGTRRTVRYDIDMIKCIYCGLC 109 H L P+G RC+AC +C A CPA I IE+ +R +R+DID + C++CGLC Sbjct: 61 HRLMLRPDGTPRCVACGMCAAACPAHCIFIEATQSDDPRIEKRVMRFDIDHLTCVFCGLC 120 Query: 110 QEACPVDAIVE-GPNFEFATETRQELYYDKERL 141 EACPVDA+ F +R++ L Sbjct: 121 AEACPVDALRMDTKQIIFEHRSREDFVAHLYDL 153 >gi|147669455|ref|YP_001214273.1| NADH-quinone oxidoreductase, chain I [Dehalococcoides sp. BAV1] gi|289432722|ref|YP_003462595.1| NADH-quinone oxidoreductase, chain I [Dehalococcoides sp. GT] gi|146270403|gb|ABQ17395.1| NADH-quinone oxidoreductase, chain I [Dehalococcoides sp. BAV1] gi|288946442|gb|ADC74139.1| NADH-quinone oxidoreductase, chain I [Dehalococcoides sp. GT] Length = 183 Score = 92.9 bits (229), Expect = 1e-17, Method: Composition-based stats. Identities = 40/115 (34%), Positives = 55/115 (47%), Gaps = 6/115 (5%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + L ++ F+ T+ YP EK + S R RG + +E CIAC C CP Sbjct: 11 ILKGMRLTFKHLFRPWITVQYPEEKLAMSKRIRGNQVIWV----KETCIACLACARACPV 66 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DAIVEGPNFEFATE 129 +AI +E R D + ID CI+CGLC E+CP +AI G +E T Sbjct: 67 KAINMEVS-RGEDRKLKVDHMSIDFGLCIFCGLCVESCPTKNAIYMGCGYETTTY 120 >gi|322383093|ref|ZP_08056920.1| hypothetical protein PL1_1942 [Paenibacillus larvae subsp. larvae B-3650] gi|321152755|gb|EFX45381.1| hypothetical protein PL1_1942 [Paenibacillus larvae subsp. larvae B-3650] Length = 137 Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 41/120 (34%), Positives = 52/120 (43%), Gaps = 7/120 (5%) Query: 27 FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC 86 K T YP RFRG +CI C +C +CP IT+ P Sbjct: 1 MVSKKVTYAYPDAPLQMPDRFRGIQHFEPD-----KCIVCNMCAKVCPTDCITLTGKPNP 55 Query: 87 --HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNN 144 + YDI+ CI C C E CP +AIV NFE +T +R EL+ + E L NN Sbjct: 56 DPEKKGKVIDTYDINFEICILCDFCTEVCPTEAIVMTGNFELSTYSRDELFKNMEWLANN 115 >gi|150017832|ref|YP_001310086.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149904297|gb|ABR35130.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Clostridium beijerinckii NCIMB 8052] Length = 129 Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 35/123 (28%), Positives = 58/123 (47%), Gaps = 6/123 (4%) Query: 11 LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70 +F K + + L + F+ T YP E R R L E+CI+C +C Sbjct: 1 MFGKGLLNGLRVTLGHLFEKNITQQYPEEHPKLPLRSRCSFRL-----DSEKCISCSICA 55 Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 CP + I +ES + + +Y++ + C++CGLC E+CP A+ +FE + + Sbjct: 56 LSCPNRVINVESYKD-ENNKKHLTKYEMQLEYCLFCGLCVESCPTKALQVTSDFELSAYS 114 Query: 131 RQE 133 R E Sbjct: 115 RAE 117 >gi|281419769|ref|ZP_06250768.1| NADH-ubiquinone oxidoreductase, NQO9 subunit [Prevotella copri DSM 18205] gi|281406145|gb|EFB36825.1| NADH-ubiquinone oxidoreductase, NQO9 subunit [Prevotella copri DSM 18205] Length = 176 Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 40/135 (29%), Positives = 56/135 (41%), Gaps = 7/135 (5%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEK---GSTSPRFRGEHALRRYPNGEERCIACKLC 69 LK ++ +F K+T YP + SPRFRG R N +C+ C LC Sbjct: 14 LKTLAIGMKTTMKEYFTPKSTEQYPENRKTTLHVSPRFRGRLVFVRDENEAYKCVGCTLC 73 Query: 70 EAICPAQ----AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 E CP + P R+ V Y D+ C++C LC AC AI +FE Sbjct: 74 EKSCPNDTIKIVTEMVEDPETGKKKRKLVDYQYDLGDCMFCELCVNACNFGAIKFVNDFE 133 Query: 126 FATETRQELYYDKER 140 A R +L ++ Sbjct: 134 NAVFDRNKLVMHLDK 148 >gi|308746031|ref|YP_003934613.1| NADH-plastoquinone oxidoreductase subunit I [Cheilanthes lindheimeri] gi|302375464|gb|ADL29838.1| NADH-plastoquinone oxidoreductase subunit I [Cheilanthes lindheimeri] Length = 175 Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 5/119 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + + T+ YP+EK S RFRG +CIAC++C +CP Sbjct: 22 IGQGSAVTSDHSNRLPITVQYPYEKNLPSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134 ++ ++ Y ID CI+CG C E CP + + FE ++ R EL Sbjct: 77 NLPVVDWIFMKEVKKKKLRSYTIDFGVCIFCGNCVEYCPTNCLSMTEEFELSSYDRHEL 135 >gi|121534367|ref|ZP_01666191.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus carboxydivorans Nor1] gi|121307137|gb|EAX48055.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus carboxydivorans Nor1] Length = 149 Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 44/127 (34%), Positives = 55/127 (43%), Gaps = 5/127 (3%) Query: 11 LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70 +F K + + L+ FF T+ YP EK + RFRG RCIAC LC Sbjct: 1 MFGKGLLTGMLITLKRFFGRPNTVQYPDEKLPMTARFRGGA----LTLDINRCIACGLCA 56 Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 CP QAI + + Y C+YC LC EACP A+ N+E A Sbjct: 57 MACPNQAI-GLATTVDESKKKSLTSYIHHTGLCLYCNLCLEACPAKALTWDQNYEAACYL 115 Query: 131 RQELYYD 137 RQ L D Sbjct: 116 RQNLDVD 122 >gi|224178048|ref|YP_002600966.1| 18 kDa subunit of NADH-plastoquinone oxidoreductase [Pyramimonas parkeae] gi|215882715|gb|ACJ71088.1| 18 kDa subunit of NADH-plastoquinone oxidoreductase [Pyramimonas parkeae] Length = 149 Score = 92.5 bits (228), Expect = 2e-17, Method: Composition-based stats. Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + + + TI+YP+ + S RFRG +CIAC++C +CP Sbjct: 22 IGQGFRVTFDHMNRKPITIHYPYGEMVPSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ + ++ Y ID CI+CG C E CP + + + + R EL Sbjct: 77 NLPVVDWEYKASMKKKQLKSYSIDFGVCIFCGNCVEYCPTNCLSMTEEYALSVYDRHELN 136 Query: 136 YD 137 +D Sbjct: 137 FD 138 >gi|30352087|ref|NP_848114.1| NADH dehydrogenase subunit I [Adiantum capillus-veneris] Length = 167 Score = 92.1 bits (227), Expect = 2e-17, Method: Composition-based stats. Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 5/126 (3%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + T+ YP+EK S RFRG +CIAC++ +CP Sbjct: 22 IGQGFAVTLDHSNRLPITVQYPYEKKLPSERFRGRIHFEFD-----KCIACEVRVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ ++ Y ID CI+CG C E CP + + +E ++ R EL Sbjct: 77 NLPVVDWIFLKDVKKKKLKNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSSYNRHELN 136 Query: 136 YDKERL 141 +D+ L Sbjct: 137 FDQTAL 142 >gi|154756870|gb|ABS85186.1| NADH dehydrogenase subunit I [Hypericum perforatum] Length = 163 Score = 92.1 bits (227), Expect = 2e-17, Method: Composition-based stats. Identities = 36/122 (29%), Positives = 57/122 (46%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +FF+ L + + T+ YP+EK RFRG +CIAC++C +CP Sbjct: 22 IGQSFFITLSHSNRLSVTLQYPYEKFILLDRFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R + Y ID CI+CG C E CP + + +E ++ R EL Sbjct: 77 DLPVVDWKWETLIRKKRLLNYSIDFGICIFCGNCVEYCPTNCLSMTEEYELSSYDRHELN 136 Query: 136 YD 137 Y+ Sbjct: 137 YN 138 >gi|161527789|ref|YP_001581615.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Nitrosopumilus maritimus SCM1] gi|160339090|gb|ABX12177.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Nitrosopumilus maritimus SCM1] Length = 165 Score = 92.1 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 11/139 (7%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGST--------SPRFRGEHALRRYPN-GEERCI 64 + A +++ + T+ YP EK G L+ + C Sbjct: 5 TGIIRALNSGIKHIAIKRFTLRYPEEKLKFVGDGYQFDPSTGVGIAGLKGRHMLFHDHCT 64 Query: 65 ACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+LC C A+AI + P ++++ ID KC++CGLC +ACP A+ Sbjct: 65 GCQLCSIACEGVAEAIAMVKVPEEQKQNKKSIMPQIDYGKCVFCGLCVDACPFYALYMTN 124 Query: 123 NFEFATETRQELYYDKERL 141 ++E ++ T++ L Y +L Sbjct: 125 DYELSSFTKEGLIYTPAQL 143 >gi|323388071|gb|ADX60297.1| hypothetical protein [Furcellaria lumbricalis] Length = 65 Score = 92.1 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 46/64 (71%), Positives = 53/64 (82%) Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 M KCI+CG CQEACPVDAIVEGPN+E+ TET +EL Y+KE LL NGDRWESEI +NI + Sbjct: 2 MTKCIFCGACQEACPVDAIVEGPNYEYGTETHEELLYNKETLLENGDRWESEIAKNIENE 61 Query: 160 SPYR 163 S YR Sbjct: 62 SMYR 65 >gi|83589831|ref|YP_429840.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica ATCC 39073] gi|83572745|gb|ABC19297.1| NADH dehydrogenase subunit I [Moorella thermoacetica ATCC 39073] Length = 134 Score = 92.1 bits (227), Expect = 3e-17, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 9/132 (6%) Query: 11 LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70 +F + + + + F T YP + + P G L E+CIAC +C Sbjct: 1 MFGQGLLKGLSITWHFCFGKAVTEQYPERRPNLPPASHGSFRL-----EREKCIACGICA 55 Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 CP IT+ES R R Y + + +C++CGLC E+CP A+ P+FE A Sbjct: 56 NACPNHVITVESE-RDEQKKRHLTGYRVKLGQCLFCGLCVESCPQGALHWQPDFELACYR 114 Query: 131 RQELYYDKERLL 142 ++ ++ LL Sbjct: 115 HED---TEQDLL 123 >gi|270308199|ref|YP_003330257.1| NADH:quinone oxidoreductase subunit 1 (chain I) [Dehalococcoides sp. VS] gi|270154091|gb|ACZ61929.1| NADH:quinone oxidoreductase subunit 1 (chain I) [Dehalococcoides sp. VS] Length = 183 Score = 91.7 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 39/115 (33%), Positives = 54/115 (46%), Gaps = 6/115 (5%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + L ++ F+ T YP EK + S R RG + +E CIAC C CP Sbjct: 11 ILKGMRLTFKHLFRPWITAQYPEEKLTMSKRIRGTQVIWV----KETCIACLACARACPV 66 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DAIVEGPNFEFATE 129 +AI +E R D + ID C++CGLC E+CP +AI G +E T Sbjct: 67 KAINMEVS-RGEDRKLKVDHMSIDFGLCVFCGLCVESCPTKNAIYMGYGYETTTY 120 >gi|329957594|ref|ZP_08298069.1| 4Fe-4S binding domain protein [Bacteroides clarus YIT 12056] gi|328522471|gb|EGF49580.1| 4Fe-4S binding domain protein [Bacteroides clarus YIT 12056] Length = 167 Score = 91.7 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 43/144 (29%), Positives = 61/144 (42%), Gaps = 7/144 (4%) Query: 1 MRIFRCNVSFLF--LKEFVGAFFLCLRYFFKAKTTINYPFEK--GSTSPRFRGEHALRRY 56 M+ + L + + + F + KTT YP + S RFRG + Sbjct: 1 MKDNNSYIGSLINGITSLLTGMKTTMTVFCRKKTTEQYPENRKTLKLSERFRGTLTMPHN 60 Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV---RYDIDMIKCIYCGLCQEAC 113 E CIAC LC+ CP I + S + ++ +Y+ D+ CI+C LC AC Sbjct: 61 ERNEHHCIACGLCQMACPNDTIKVTSETVETEDGKKKKILAKYEYDLGSCIFCQLCVNAC 120 Query: 114 PVDAIVEGPNFEFATETRQELYYD 137 P DAI NFE A R +L Sbjct: 121 PHDAITFDQNFEHAVFDRSKLVLT 144 >gi|317130739|ref|YP_004097021.1| NADH-quinone oxidoreductase, chain I [Bacillus cellulosilyticus DSM 2522] gi|315475687|gb|ADU32290.1| NADH-quinone oxidoreductase, chain I [Bacillus cellulosilyticus DSM 2522] Length = 151 Score = 91.7 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 45/131 (34%), Positives = 60/131 (45%), Gaps = 7/131 (5%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + F + YF K K TI YP E+ RFRG H +CI C LC CP Sbjct: 4 LLKGFGVTFNYFRKKKITIQYPDEQVVMPERFRGIHRFFPD-----KCIVCNLCVTACPT 58 Query: 76 QAITIESGPRCHDGTRRTV-RYDIDMIKCIYCGLCQEACPVDAIVEGPNFE-FATETRQE 133 IT+ + ++ + Y+ID CI C C E CP DAIV ++ ++ R E Sbjct: 59 DVITLTGKKSEENPKKKIIDTYNIDFQGCILCDFCTEVCPTDAIVMTARYDNLSSFNRSE 118 Query: 134 LYYDKERLLNN 144 + D E L NN Sbjct: 119 HFKDIEWLTNN 129 >gi|16082008|ref|NP_394425.1| NADH dehydrogenase subunit I [Thermoplasma acidophilum DSM 1728] gi|10640280|emb|CAC12094.1| NADH dehydrogenase, chain ndhI [Thermoplasma acidophilum] Length = 154 Score = 91.3 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 6/133 (4%) Query: 9 SFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKL 68 + L + + ++ FK T+ YP EK T RF+ L C+ C L Sbjct: 19 KRIPLIGSLQGMYTVFKHLFKKPITVQYPEEKAYTPARFKFRIFLSMDD-----CVGCTL 73 Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 CE +CP +I + R + +R + ++ C C C+E CP +AI E A Sbjct: 74 CEQVCPNLSIRMIVVERNNPHNKRNLYPQVNFGTCTVCRNCEEICPTEAIYLTHELETA- 132 Query: 129 ETRQELYYDKERL 141 TR +Y E L Sbjct: 133 RTRNNFFYSPEEL 145 >gi|281424346|ref|ZP_06255259.1| NADH-ubiquinone oxidoreductase, NQO9 subunit [Prevotella oris F0302] gi|299140922|ref|ZP_07034060.1| NADH-ubiquinone oxidoreductase, NQO9 subunit (NQO9) [Prevotella oris C735] gi|281401615|gb|EFB32446.1| NADH-ubiquinone oxidoreductase, NQO9 subunit [Prevotella oris F0302] gi|298577888|gb|EFI49756.1| NADH-ubiquinone oxidoreductase, NQO9 subunit (NQO9) [Prevotella oris C735] Length = 177 Score = 91.3 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 56/135 (41%), Gaps = 7/135 (5%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEK---GSTSPRFRGEHALRRYPNGEERCIACKLC 69 LK + ++ +F KTT YP + + R RG R + +C AC +C Sbjct: 15 LKTLGTGLKVTMKEYFTPKTTEQYPENRKTTLHVAKRHRGRLVFLRDEDENYKCTACTMC 74 Query: 70 EAICPAQ----AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 E CP +E P ++ Y D+ C++C LC AC AI +FE Sbjct: 75 EKACPNDTIKIVAHLEENPETGRKKKQLDDYQYDLGDCMFCQLCVNACNFGAIEFVNDFE 134 Query: 126 FATETRQELYYDKER 140 + R +L Y ++ Sbjct: 135 NSVFDRDKLVYHLDK 149 >gi|13541942|ref|NP_111630.1| NADH dehydrogenase subunit I [Thermoplasma volcanium GSS1] Length = 154 Score = 91.3 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 6/133 (4%) Query: 9 SFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKL 68 + + F ++ FK T+ YP EK T PRF+ L C+ C L Sbjct: 19 KRIPFVGMLQGMFTVFKHLFKKPITVQYPEEKAYTPPRFKFRIFLSMD-----DCVGCTL 73 Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 CE +CP +I + R + +R + ++ C C C+E CP +AI E A Sbjct: 74 CEQVCPNLSIRMIVVERNNPHNKRNLYPQVNFGTCTVCRNCEEICPTEAIYLTHELETA- 132 Query: 129 ETRQELYYDKERL 141 TR +Y + L Sbjct: 133 RTRNNFFYSPQEL 145 >gi|313679552|ref|YP_004057291.1| NADH dehydrogenase i subunit i [Oceanithermus profundus DSM 14977] gi|313152267|gb|ADR36118.1| NADH dehydrogenase I subunit I [Oceanithermus profundus DSM 14977] Length = 189 Score = 91.3 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 47/134 (35%), Positives = 60/134 (44%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 K + ++ T YP+ K P AL +G ERCI C CE C Sbjct: 12 KAIGTGMATVHKRVYEEAPTEFYPYVKPDLPPVSVQSLALVENEDGSERCIVCLQCERAC 71 Query: 74 PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 PAQ ITIE R+DID++ C+YC C EACPV +IV +FE +T Q Sbjct: 72 PAQVITIERHRNPEGKGFLIDRFDIDLVNCMYCAACVEACPVSSIVTIQDFEMSTYDLQT 131 Query: 134 LYYDKERLLNNGDR 147 L D + L R Sbjct: 132 LKADVDFLHEQARR 145 >gi|258647048|ref|ZP_05734517.1| NADH-ubiquinone oxidoreductase, NQO9 subunit [Prevotella tannerae ATCC 51259] gi|260853163|gb|EEX73032.1| NADH-ubiquinone oxidoreductase, NQO9 subunit [Prevotella tannerae ATCC 51259] Length = 194 Score = 91.3 bits (225), Expect = 4e-17, Method: Composition-based stats. Identities = 41/156 (26%), Positives = 61/156 (39%), Gaps = 9/156 (5%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGS--TSPRFRGEHALRRYPNGEERCIACKLCEA 71 K +R F K T YP + RFRG + N E +C+ C LC Sbjct: 15 KTLAVGLRTTMRELFTKKITQQYPENRKELVMFDRFRGSLVMPHNENNEHKCVGCGLCMM 74 Query: 72 ICPAQAITIESGPRCHDGTRRTV---RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 CP +I + + ++ R++ ++ C++C LC ACP DAI +FE A Sbjct: 75 ACPNNSINVVTEMVATPDGKKKKQLLRHEYNLGSCMFCMLCVRACPHDAITFDQSFENAV 134 Query: 129 ETRQELYYDKE----RLLNNGDRWESEIVRNIVTDS 160 R +L RLL R + D+ Sbjct: 135 FDRSKLILQLNQPGSRLLEKPARSAAPKAATPADDA 170 >gi|330838011|ref|YP_004412591.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Selenomonas sputigena ATCC 35185] gi|329745775|gb|AEB99131.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Selenomonas sputigena ATCC 35185] Length = 139 Score = 90.9 bits (224), Expect = 5e-17, Method: Composition-based stats. Identities = 40/124 (32%), Positives = 60/124 (48%), Gaps = 5/124 (4%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 K + + + K T++YP EK + RFRG H E+CI+C+LC C Sbjct: 4 KGLTKGLGVTWGHLWGKKETVSYPEEKIPMTERFRGGH----LAMEAEKCISCRLCATNC 59 Query: 74 PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 P +A+ + R Y D+ +CIYCG+C E CP AI NF A+ +++ Sbjct: 60 PNKALDLHIVTD-EAKKRHMAEYWHDIGRCIYCGICVEVCPPKAISWDKNFAIASYFKED 118 Query: 134 LYYD 137 + YD Sbjct: 119 MRYD 122 >gi|154250402|ref|YP_001411227.1| putative oxidoreductase [Fervidobacterium nodosum Rt17-B1] gi|154154338|gb|ABS61570.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Fervidobacterium nodosum Rt17-B1] Length = 615 Score = 90.9 bits (224), Expect = 5e-17, Method: Composition-based stats. Identities = 32/116 (27%), Positives = 50/116 (43%), Gaps = 6/116 (5%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 + + F+ TI P EK + R+RG H N +CI C C ICP AIT+ Sbjct: 11 IAWKNLFEKPVTIRVPKEKREAAERYRGFHI-----NDWNKCIGCGTCAKICPTDAITMV 65 Query: 82 SGPRCHDGT-RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 P + R ID +C +C +C + C ++ + F + ++ YY Sbjct: 66 EVPDMKQEYGMKPQRPAIDYGRCSFCAMCVDICTTGSLQMTREYIFVSPNPEDFYY 121 >gi|302327043|gb|ADL26244.1| NADH-quinone oxidoreductase, I subunit [Fibrobacter succinogenes subsp. succinogenes S85] Length = 180 Score = 90.9 bits (224), Expect = 5e-17, Method: Composition-based stats. Identities = 45/142 (31%), Positives = 71/142 (50%), Gaps = 8/142 (5%) Query: 8 VSFLFLKEFVGAFFLCLRY----FFK--AKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 + L++ E + + L++ F+ TI+YP + +R +H L P+G Sbjct: 4 IERLYIFEAIRGLWTTLKHAARGLFRYEELPTISYPEGQPEIRNTYRAKHRLMLRPDGTP 63 Query: 62 RCIACKLCEAICPAQAITIESGP-RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 RC+AC +C A CPA I IE+ +R +R+DID + C++CGLC EACPVDA+ Sbjct: 64 RCVACGMCAAACPAHCIFIEATQSDDPRIEKRVMRFDIDHLTCVFCGLCAEACPVDALRM 123 Query: 121 -GPNFEFATETRQELYYDKERL 141 F +R++ L Sbjct: 124 DTKQIIFEHRSREDFVAHLYDL 145 >gi|118579075|ref|YP_900325.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Pelobacter propionicus DSM 2379] gi|118580054|ref|YP_901304.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Pelobacter propionicus DSM 2379] gi|118581586|ref|YP_902836.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Pelobacter propionicus DSM 2379] gi|156633537|sp|A1ALP7|NUOI_PELPD RecName: Full=NADH-quinone oxidoreductase subunit I; AltName: Full=NADH dehydrogenase I subunit I; AltName: Full=NDH-1 subunit I gi|118501785|gb|ABK98267.1| NADH dehydrogenase subunit I [Pelobacter propionicus DSM 2379] gi|118502764|gb|ABK99246.1| NADH dehydrogenase subunit I [Pelobacter propionicus DSM 2379] gi|118504296|gb|ABL00779.1| NADH dehydrogenase subunit I [Pelobacter propionicus DSM 2379] Length = 186 Score = 90.9 bits (224), Expect = 6e-17, Method: Composition-based stats. Identities = 42/156 (26%), Positives = 69/156 (44%), Gaps = 18/156 (11%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKT----------TINYPFE-KGSTSPRFRG 49 M ++ L++ E + + FF T YP E + S RG Sbjct: 11 MDLWDR----LYIFEVIRGLCITGSVFFGNMWKWLTFRKGALTAYYPEELRADYSSANRG 66 Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGP--RCHDGTRRTVRYDIDMIKCIYCG 107 H L +G+ +C++C +C +CPA I I+S + R++ID +CI+CG Sbjct: 67 RHLLTTRADGKVQCVSCNMCATVCPAYCIEIQSAADFNDPFHPKSPDRFEIDYSRCIFCG 126 Query: 108 LCQEACPVDAIVEGPNF-EFATETRQELYYDKERLL 142 C EACP DAI + F R+ ++ ++ L+ Sbjct: 127 FCVEACPEDAIRMSKDTPNFPGFDRENMWATQDLLM 162 >gi|329765840|ref|ZP_08257406.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137683|gb|EGG41953.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Candidatus Nitrosoarchaeum limnia SFB1] Length = 165 Score = 90.5 bits (223), Expect = 6e-17, Method: Composition-based stats. Identities = 35/144 (24%), Positives = 61/144 (42%), Gaps = 21/144 (14%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTS--------------PRFRGEHALRRYPNG 59 + A +++ + T+ YP EK ++G H L Sbjct: 5 SGIIKALNSGIKHIAIKRFTLRYPEEKLKFVGDGYQFDPSTGVGIAGYKGRHMLFHDH-- 62 Query: 60 EERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 C C+LC C A+AI + P H ++ + ID KC++CGLC +ACP A Sbjct: 63 ---CTGCQLCSIACEGVAEAIAMVKVPEEHKQNKKAIMPQIDYGKCVFCGLCVDACPFYA 119 Query: 118 IVEGPNFEFATETRQELYYDKERL 141 + ++E ++ +++ L Y +L Sbjct: 120 LYMTNDYELSSFSKEGLIYTPAQL 143 >gi|288928302|ref|ZP_06422149.1| NADH-ubiquinone oxidoreductase, NQO9 subunit (NQO9) [Prevotella sp. oral taxon 317 str. F0108] gi|288331136|gb|EFC69720.1| NADH-ubiquinone oxidoreductase, NQO9 subunit (NQO9) [Prevotella sp. oral taxon 317 str. F0108] Length = 176 Score = 90.5 bits (223), Expect = 6e-17, Method: Composition-based stats. Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 6/134 (4%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEK---GSTSPRFRGEHALRRYPNGEERCIACKLC 69 +K + LR +F K T YP + + R RG ++R N +C+AC +C Sbjct: 16 IKSLATGLRVTLREYFTPKVTEQYPENRKTTLHVAKRSRGRLVMKRDENDVVKCVACLMC 75 Query: 70 EAICPAQAITIESGPRCHDGTRRT---VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 E CP I I S ++ ++ V+YD D+ C++C LC AC DAI +FE Sbjct: 76 EKACPNGTIRIVSEMVTNEEGKKKRQLVKYDYDLGDCMFCELCTNACNFDAIEFTNDFEN 135 Query: 127 ATETRQELYYDKER 140 + R +L + ++ Sbjct: 136 SVFNRDKLVIELDK 149 >gi|315230617|ref|YP_004071053.1| NADH-ubiquinone oxidoreductase subunit I [Thermococcus barophilus MP] gi|315183645|gb|ADT83830.1| NADH-ubiquinone oxidoreductase chain I [Thermococcus barophilus MP] Length = 213 Score = 90.5 bits (223), Expect = 7e-17, Method: Composition-based stats. Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 13/135 (9%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80 +L L+Y FK TI P+EK + ++RG H+L ++CI C C ICPA+AI + Sbjct: 24 WLGLKYLFKKPVTIKIPYEKTQIAEKYRGFHSL-----DWKKCIGCNFCGQICPARAIEM 78 Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE--LYYD- 137 +R ID +C +C C + CP A+ N+ TE R+E L YD Sbjct: 79 TWIEVNGKAEKRP-HPKIDYGRCTFCQFCVDVCPTGALGFVSNYMLTTEWREEELLLYDW 137 Query: 138 ----KERLLNNGDRW 148 +++ +++ Sbjct: 138 VPIHPDKIKEINEKY 152 >gi|167764933|ref|ZP_02437054.1| hypothetical protein BACSTE_03325 [Bacteroides stercoris ATCC 43183] gi|167697602|gb|EDS14181.1| hypothetical protein BACSTE_03325 [Bacteroides stercoris ATCC 43183] Length = 169 Score = 90.5 bits (223), Expect = 7e-17, Method: Composition-based stats. Identities = 38/130 (29%), Positives = 54/130 (41%), Gaps = 5/130 (3%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEK--GSTSPRFRGEHALRRYPNGEERCIACKLCE 70 + + + F++ KTT YP + S RFRG + E C+AC LC+ Sbjct: 17 ITSLLTGMKTTMTVFWRKKTTEQYPENRKTLKLSERFRGTLTMPHNEKNEHHCVACGLCQ 76 Query: 71 AICPAQ---AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CP + + +Y+ D+ CI+C LC ACP DAI NFE A Sbjct: 77 TACPNDTIKVTSQTIETEDGKKKKILAKYEYDLGSCIFCQLCVNACPHDAITFDQNFEHA 136 Query: 128 TETRQELYYD 137 R +L Sbjct: 137 VFDRSKLVLT 146 >gi|301353382|ref|YP_003795635.1| NADH-plastoquinone oxidoreductase subunit I [Pteridium aquilinum subsp. aquilinum] gi|301016300|gb|ADK47587.1| NADH-plastoquinone oxidoreductase subunit I [Pteridium aquilinum subsp. aquilinum] Length = 160 Score = 90.2 bits (222), Expect = 8e-17, Method: Composition-based stats. Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 5/122 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + ++ T+ YP+EK +S RFRG +CIAC++ +CP Sbjct: 22 IGQGSAVTSDHSNRSPITVQYPYEKILSSERFRGRIHFEFD-----KCIACEVRVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++ +R Y ID CI+CG C E CP + + +E ++ R EL Sbjct: 77 NLPVVDWILLKDIKKKRLKSYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSSYDRHELN 136 Query: 136 YD 137 YD Sbjct: 137 YD 138 >gi|330997242|ref|ZP_08321095.1| 4Fe-4S binding domain protein [Paraprevotella xylaniphila YIT 11841] gi|329571037|gb|EGG52744.1| 4Fe-4S binding domain protein [Paraprevotella xylaniphila YIT 11841] Length = 165 Score = 90.2 bits (222), Expect = 9e-17, Method: Composition-based stats. Identities = 41/169 (24%), Positives = 67/169 (39%), Gaps = 15/169 (8%) Query: 1 MRIFRCNVSFLF--LKEFVGAFFLCLRYFFKAKTTINYPFEKG---STSPRFRGEHALRR 55 M F + + + G ++ FF+ K T YP + R R + + Sbjct: 1 MSKFTKYIKRYWRSTESLAGGLKTSIKVFFRKKVTEQYPENRHTTLYIPERHRAQLEMIH 60 Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCH---DGTRRTVRYDIDMIKCIYCGLCQEA 112 + C+AC LC+ CP I + S R + V+Y+ D+ C++C LC A Sbjct: 61 DDRNQHHCVACGLCQMACPNDTIRVVSEVREDAEGKKKKYLVKYEYDLGSCMFCQLCVNA 120 Query: 113 CPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161 CP AI +FE + R ++LL +R S + + P Sbjct: 121 CPHGAIRFSNDFENSVFER-------DKLLLTLNREGSVLAPAPEKNKP 162 >gi|305666192|ref|YP_003862479.1| NADH dehydrogenase I subunit I [Maribacter sp. HTCC2170] gi|88707690|gb|EAQ99931.1| NADH dehydrogenase I, chain I [Maribacter sp. HTCC2170] Length = 158 Score = 90.2 bits (222), Expect = 9e-17, Method: Composition-based stats. Identities = 41/149 (27%), Positives = 55/149 (36%), Gaps = 13/149 (8%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFF---KAKTTINYPF--EKGSTSPRFRGEHALRR 55 M F + K + + +YF K T YP E RFRGE + Sbjct: 1 MSYFSDIFKGI--KTLLTGMSVTGKYFLHSRKGAITQQYPDNRETLKMFDRFRGEVIMPH 58 Query: 56 YPNGEERCIACKLCEAICPAQAITIESG----PRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 RC C+ CE CP I I ++ ++ + C CGLC + Sbjct: 59 DEENRHRCTGCQKCEIACPNGTIEIIWDRGIDEETGKKKKKIDQFVYHLSMCTMCGLCID 118 Query: 112 ACPVDAIVEGPNFEFATETRQEL--YYDK 138 CP DAI G NFE + R L +K Sbjct: 119 VCPTDAIKWGQNFENSVYDRTALTRVLNK 147 >gi|302345403|ref|YP_003813756.1| 4Fe-4S binding domain protein [Prevotella melaninogenica ATCC 25845] gi|302149394|gb|ADK95656.1| 4Fe-4S binding domain protein [Prevotella melaninogenica ATCC 25845] Length = 178 Score = 90.2 bits (222), Expect = 9e-17, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 7/135 (5%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEK---GSTSPRFRGEHALRRYPNGEERCIACKLC 69 LK + ++ +F K+T YP + + R RG +R +C AC +C Sbjct: 16 LKTLATGMKVTMKEYFTPKSTEQYPENRKTTLHVAKRHRGRLVFKRDEEKNHKCTACTMC 75 Query: 70 EAICPAQAIT----IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 E CP I + + ++ V Y+ D+ C++C LC AC DAI +FE Sbjct: 76 EKACPNGTIKILSEMVTNEETGKKKKQLVDYEYDLGDCMFCELCVNACNFDAIEFTNDFE 135 Query: 126 FATETRQELYYDKER 140 A R +L ++ Sbjct: 136 NAVFNRSKLILHLDK 150 >gi|288803379|ref|ZP_06408812.1| NADH-ubiquinone oxidoreductase, NQO9 subunit (NQO9) [Prevotella melaninogenica D18] gi|288334199|gb|EFC72641.1| NADH-ubiquinone oxidoreductase, NQO9 subunit (NQO9) [Prevotella melaninogenica D18] Length = 178 Score = 90.2 bits (222), Expect = 1e-16, Method: Composition-based stats. Identities = 36/135 (26%), Positives = 58/135 (42%), Gaps = 7/135 (5%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEK---GSTSPRFRGEHALRRYPNGEERCIACKLC 69 LK + ++ +F K+T YP + + R RG +R +C AC +C Sbjct: 16 LKTLATGMKVTMKEYFTPKSTEQYPENRKTTLHVAKRHRGRLVFKRDEEKNHKCTACTMC 75 Query: 70 EAICPAQAIT----IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 E CP I + + ++ V Y+ D+ C++C LC AC DAI +FE Sbjct: 76 EKACPNGTIKILSEMVTNEETGKKKKQLVDYEYDLGDCMFCELCVNACNFDAIEFTNDFE 135 Query: 126 FATETRQELYYDKER 140 A R +L ++ Sbjct: 136 NAVFDRSKLILHLDK 150 >gi|218176295|ref|YP_002364552.1| NADH-plastoquinone oxidoreductase subunit I [Festuca arundinacea] gi|215882379|gb|ACJ70809.1| NADH-plastoquinone oxidoreductase subunit I [Festuca arundinacea] Length = 180 Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 5/120 (4%) Query: 18 GAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA 77 F L + + TI+ EK T FRG +CIAC++C +CP Sbjct: 24 QGFITTLSHTNRLLITIHTLNEKSITPGGFRGRIHFEFD-----KCIACEVCVRVCPIDL 78 Query: 78 ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 ++ + ++ + Y ID CI+CG C E CP + + +E +T R EL Y+ Sbjct: 79 PLVDWRFKKDIKRKQLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTYDRHELNYN 138 >gi|71004228|ref|XP_756780.1| hypothetical protein UM00633.1 [Ustilago maydis 521] gi|46095829|gb|EAK81062.1| hypothetical protein UM00633.1 [Ustilago maydis 521] Length = 64 Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 43/64 (67%), Positives = 49/64 (76%) Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 M KCIYCG CQEACPVDAIVE N E++TETR+EL Y+KE+LL NGDR E+EI NI D Sbjct: 1 MTKCIYCGFCQEACPVDAIVETQNTEYSTETREELLYNKEKLLANGDRAEAEIAANIYAD 60 Query: 160 SPYR 163 R Sbjct: 61 HLQR 64 >gi|225874133|ref|YP_002755592.1| NADH dehydrogenase I, I subunit [Acidobacterium capsulatum ATCC 51196] gi|225792565|gb|ACO32655.1| NADH dehydrogenase I, I subunit [Acidobacterium capsulatum ATCC 51196] Length = 189 Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 40/155 (25%), Positives = 57/155 (36%), Gaps = 15/155 (9%) Query: 11 LFLKEFVGAFFLCLRYFFK------AKTTINYPFEKGSTSPRFRGEHALRRYPNGEE--- 61 + + R FF T+ YP E+ R L + E Sbjct: 1 MLGEGIAKGLIETARNFFGSFVDKDRLVTVQYPEERHPLPEASRVFPFLLYDGDDAEKGL 60 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGT-----RRTVRYDIDMIKCIYCGLCQEACPVD 116 RC++C +CE CP ITIE ++ID+ C+ C +C E CP D Sbjct: 61 RCVSCHICEKECPPHCITIEKSTDKKPDYVGKSQFYPAVFNIDVSVCMSCQICVEVCPFD 120 Query: 117 AIVEGPNFEFATETR-QELYYDKERLLNNGDRWES 150 AI FE +T R L + KE+L + Sbjct: 121 AIRMDTAFELSTSDRFDGLLWTKEQLAKPNSHYRQ 155 >gi|260887652|ref|ZP_05898915.1| NADH-quinone oxidoreductase, I subunit [Selenomonas sputigena ATCC 35185] gi|260862668|gb|EEX77168.1| NADH-quinone oxidoreductase, I subunit [Selenomonas sputigena ATCC 35185] Length = 134 Score = 89.8 bits (221), Expect = 1e-16, Method: Composition-based stats. Identities = 39/120 (32%), Positives = 59/120 (49%), Gaps = 5/120 (4%) Query: 18 GAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA 77 + + + K T++YP EK + RFRG H E+CI+C+LC CP +A Sbjct: 3 KGLGVTWGHLWGKKETVSYPEEKIPMTERFRGGH----LAMEAEKCISCRLCATNCPNKA 58 Query: 78 ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 + + R Y D+ +CIYCG+C E CP AI NF A+ ++++ YD Sbjct: 59 LDLHIVTD-EAKKRHMAEYWHDIGRCIYCGICVEVCPPKAISWDKNFAIASYFKEDMRYD 117 >gi|14325373|dbj|BAB60277.1| NADH dehydrogenase I chain F [Thermoplasma volcanium GSS1] Length = 143 Score = 89.4 bits (220), Expect = 1e-16, Method: Composition-based stats. Identities = 37/133 (27%), Positives = 56/133 (42%), Gaps = 6/133 (4%) Query: 9 SFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKL 68 + + F ++ FK T+ YP EK T PRF+ L C+ C L Sbjct: 8 KRIPFVGMLQGMFTVFKHLFKKPITVQYPEEKAYTPPRFKFRIFLSMD-----DCVGCTL 62 Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 CE +CP +I + R + +R + ++ C C C+E CP +AI E A Sbjct: 63 CEQVCPNLSIRMIVVERNNPHNKRNLYPQVNFGTCTVCRNCEEICPTEAIYLTHELETA- 121 Query: 129 ETRQELYYDKERL 141 TR +Y + L Sbjct: 122 RTRNNFFYSPQEL 134 >gi|218129266|ref|ZP_03458070.1| hypothetical protein BACEGG_00843 [Bacteroides eggerthii DSM 20697] gi|317475238|ref|ZP_07934505.1| 4Fe-4S binding domain-containing protein [Bacteroides eggerthii 1_2_48FAA] gi|217988644|gb|EEC54964.1| hypothetical protein BACEGG_00843 [Bacteroides eggerthii DSM 20697] gi|316908691|gb|EFV30378.1| 4Fe-4S binding domain-containing protein [Bacteroides eggerthii 1_2_48FAA] Length = 170 Score = 89.4 bits (220), Expect = 2e-16, Method: Composition-based stats. Identities = 40/129 (31%), Positives = 56/129 (43%), Gaps = 5/129 (3%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEK--GSTSPRFRGEHALRRYPNGEERCIACKLCEA 71 + + F + KTT YP + S RFRG + E C+AC LC+ Sbjct: 19 SSLLTGMKTTMTVFCRKKTTEQYPENRKTLKLSERFRGTLTMPHNEQNEHHCVACGLCQM 78 Query: 72 ICPAQAITIESGPRCHDGTRRTV---RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 CP I + S + ++ +Y+ D+ CI+C LC ACP DAI NFE A Sbjct: 79 ACPNDTIKVTSETIETEDGKKKKILAKYEYDLGSCIFCQLCVNACPHDAITFDQNFEHAV 138 Query: 129 ETRQELYYD 137 R +L Sbjct: 139 FDRSKLVLT 147 >gi|224026048|ref|ZP_03644414.1| hypothetical protein BACCOPRO_02801 [Bacteroides coprophilus DSM 18228] gi|224019284|gb|EEF77282.1| hypothetical protein BACCOPRO_02801 [Bacteroides coprophilus DSM 18228] Length = 155 Score = 89.0 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 34/145 (23%), Positives = 59/145 (40%), Gaps = 8/145 (5%) Query: 1 MRIFRCNVSFLF--LKEFVGAFFLCLRYFFKAKTTINYPFEKG---STSPRFRGEHALRR 55 M F + +K + ++ F++ K T YP + R R + Sbjct: 1 MESFNEYIKGFGSGVKSLLIGMRTSMKVFWQPKVTEQYPENRHTTLHIPERHRAMLVMPH 60 Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV---RYDIDMIKCIYCGLCQEA 112 C+AC LC+ CP I + S R + ++ +Y+ ++ C++C LC A Sbjct: 61 DSENHHHCVACGLCQMACPNGTIKVTSETREDEDGKKKKFLVKYEYNLGSCMFCQLCVNA 120 Query: 113 CPVDAIVEGPNFEFATETRQELYYD 137 CP AI +FE A +++L Sbjct: 121 CPHGAIQFTNDFENAVFEKEKLLLT 145 >gi|182412571|ref|YP_001817637.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Opitutus terrae PB90-1] gi|177839785|gb|ACB74037.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Opitutus terrae PB90-1] Length = 183 Score = 89.0 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 40/123 (32%), Positives = 55/123 (44%), Gaps = 1/123 (0%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPN-GEERCIACKLCEA 71 K + + R K T+ YP E RFRG L P G+ RC AC LCE Sbjct: 14 FKSLLIGMRITGREAAKPILTVQYPRETLKMPARFRGHIQLILDPETGKPRCTACTLCEK 73 Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 CP++ I ++ R D + +Y +D KC CG C E CP DAI + + R Sbjct: 74 ACPSECIDLDGLRREGDKKKSVSKYMLDFTKCSLCGSCVEVCPSDAIEFSKQYNVVSLGR 133 Query: 132 QEL 134 ++ Sbjct: 134 EQF 136 >gi|255007682|ref|ZP_05279808.1| putative NADH dehydrogenase I subunit I [Bacteroides fragilis 3_1_12] gi|313145377|ref|ZP_07807570.1| NADH dehydrogenase subunit I [Bacteroides fragilis 3_1_12] gi|313134144|gb|EFR51504.1| NADH dehydrogenase subunit I [Bacteroides fragilis 3_1_12] Length = 159 Score = 89.0 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 39/129 (30%), Positives = 58/129 (44%), Gaps = 5/129 (3%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGS--TSPRFRGEHALRRYPNGEERCIACKLCE 70 + + ++ +F+ K T YP + RFRG + N E RC+AC LC+ Sbjct: 16 IGSLLTGMKTTIKVYFRKKVTEQYPENRAELKMFDRFRGTLTMPHNENNEHRCVACGLCQ 75 Query: 71 AICPAQAITIESGPRCHDGTRRTV---RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CP I + S + ++ +Y+ D+ CI+C LC ACP DAI FE A Sbjct: 76 MACPNDTIKVTSETVETEEGKKKKILAKYEYDLGSCIFCQLCVNACPHDAITFDQVFEHA 135 Query: 128 TETRQELYY 136 R +L Sbjct: 136 VFDRSKLIL 144 >gi|217077743|ref|YP_002335461.1| putative oxidoreductase [Thermosipho africanus TCF52B] gi|217037598|gb|ACJ76120.1| glutamate synthase, beta subunit [Thermosipho africanus TCF52B] Length = 616 Score = 89.0 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 31/124 (25%), Positives = 51/124 (41%), Gaps = 7/124 (5%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 KEF +Y F+ TI P+ K + R+RG H N E+CI C C IC Sbjct: 9 KEFFAPIK-AWKYMFRKPVTIKVPYVKREAAERYRGFHI-----NDWEKCIGCGTCAKIC 62 Query: 74 PAQAITIESGPRCHDGT-RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 P AI + ++ R ID +C +C +C + C ++ + + + Sbjct: 63 PTDAIRMVEVEGLAQEYGKKPQRPVIDYGRCSFCAMCVDICTTSSLKMTREYVHISPDPE 122 Query: 133 ELYY 136 + + Sbjct: 123 DFIF 126 >gi|332881561|ref|ZP_08449210.1| 4Fe-4S binding domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332680559|gb|EGJ53507.1| 4Fe-4S binding domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 165 Score = 89.0 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 43/169 (25%), Positives = 68/169 (40%), Gaps = 15/169 (8%) Query: 1 MRIFRCNVSFLF--LKEFVGAFFLCLRYFFKAKTTINYPFEKG---STSPRFRGEHALRR 55 M F + + + G ++ FF+ K T YP + R R + + Sbjct: 1 MSKFTKYIKRYWRSTESLAGGLNTSIKVFFRKKVTEQYPENRHTTLYIPERHRAQLEMIH 60 Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCH---DGTRRTVRYDIDMIKCIYCGLCQEA 112 + C+AC LC+ CP I + S R + VRY+ D+ C++C LC A Sbjct: 61 NDRNQHHCVACGLCQMACPNDTIRVVSEVREDAEGKKKKYLVRYEYDLGSCMFCQLCVNA 120 Query: 113 CPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161 CP DAI +FE + R ++LL +R S + + P Sbjct: 121 CPHDAIRFSNDFENSVFER-------DKLLLTLNREGSVLAPAPEKNKP 162 >gi|329962487|ref|ZP_08300487.1| 4Fe-4S binding domain protein [Bacteroides fluxus YIT 12057] gi|328530043|gb|EGF56931.1| 4Fe-4S binding domain protein [Bacteroides fluxus YIT 12057] Length = 187 Score = 89.0 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 39/130 (30%), Positives = 59/130 (45%), Gaps = 5/130 (3%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEK--GSTSPRFRGEHALRRYPNGEERCIACKLCE 70 + + + F + KTT YP + S RFRG + N E C+AC LC+ Sbjct: 35 ITSLLTGMKTTMTVFCRKKTTEQYPENRATLKLSDRFRGTLTMPHNANNEHHCVACGLCQ 94 Query: 71 AICPAQAITIESGPRCHDGTRRTV---RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CP I + S + ++ +Y+ D+ C++C LC ACP DAI+ +FE A Sbjct: 95 TACPNDTIKVTSEMIETEEGKKKKILAKYEYDLGSCMFCQLCVNACPHDAIMFDQDFEHA 154 Query: 128 TETRQELYYD 137 R +L Sbjct: 155 VFDRSKLVLT 164 >gi|255037784|ref|YP_003088405.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Dyadobacter fermentans DSM 18053] gi|254950540|gb|ACT95240.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dyadobacter fermentans DSM 18053] Length = 513 Score = 89.0 bits (219), Expect = 2e-16, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 55/154 (35%), Gaps = 34/154 (22%) Query: 17 VGAFFLCLRYFF-----KAK---------------TTINYPFEKGSTSPRFRGEHALRRY 56 + L LR+ + + TI YP E R R Sbjct: 16 LTGMRLTLRHLWNARKSRKPADIRSSSFYDQQDGIVTIQYPQETIPIPDNGR-----YRL 70 Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTR---------RTVRYDIDMIKCIYCG 107 N + CI C C +CP I IE D R ++DIDM KC YCG Sbjct: 71 HNEMDDCIVCDKCAKVCPVDCIDIEPIKAVEDVGRASDGSPIRLYAAKFDIDMAKCCYCG 130 Query: 108 LCQEACPVDAIVEGPNFEFATETRQELYYDKERL 141 LC CP + + F+++ +++ Y+ L Sbjct: 131 LCTTVCPTECLTMTKTFDYSELDVRDMVYNYSNL 164 >gi|332885913|gb|EGK06157.1| hypothetical protein HMPREF9456_00031 [Dysgonomonas mossii DSM 22836] Length = 195 Score = 88.6 bits (218), Expect = 2e-16, Method: Composition-based stats. Identities = 43/158 (27%), Positives = 63/158 (39%), Gaps = 10/158 (6%) Query: 1 MRIFRCNVSFLF--LKEFVGAFFLCLRYFFKAKTTINYPFEKGS--TSPRFRGEHALRRY 56 M S LF +K + + + K T YP + + RFRGE + Sbjct: 1 MSSVSEYFSGLFGGIKSLLTGMRITWGELWTKKITEQYPENRATLVIPDRFRGELTMPHD 60 Query: 57 PNGEERCIACKLCEAICPAQAITIES---GPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 N E C AC +C+ CP I + S + +Y D+ C +C LC C Sbjct: 61 ENNEHACTACGICQMNCPNGTIQVISRSIETEDGKKKKVLDKYIYDLGLCTFCNLCVITC 120 Query: 114 PVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 P DAI FE + TR +L E+L +G + + Sbjct: 121 PSDAIKFANTFENSLFTRSKLI---EQLNRDGSKLREK 155 >gi|317503348|ref|ZP_07961395.1| NADH-quinone oxidoreductase subunit I [Prevotella salivae DSM 15606] gi|315665527|gb|EFV05147.1| NADH-quinone oxidoreductase subunit I [Prevotella salivae DSM 15606] Length = 177 Score = 88.6 bits (218), Expect = 2e-16, Method: Composition-based stats. Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 7/135 (5%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEK---GSTSPRFRGEHALRRYPNGEERCIACKLC 69 LK + ++ +F KTT YP + S R RG +R + +C+AC +C Sbjct: 15 LKTLGTGLKVTMKEYFTPKTTEQYPENRKTTLHVSKRHRGRLVFKRNEDESYKCVACLMC 74 Query: 70 EAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 E CP I + P R+ Y D+ C++C LC AC DAI +FE Sbjct: 75 EKACPNGTIQITSHMAEDPETGRKKRQLDDYHYDLGDCMFCQLCVNACNFDAIKFVNDFE 134 Query: 126 FATETRQELYYDKER 140 + + +L Y ++ Sbjct: 135 NSVFDKDKLVYHLDK 149 >gi|260912213|ref|ZP_05918765.1| NADH-ubiquinone oxidoreductase [Prevotella sp. oral taxon 472 str. F0295] gi|260633647|gb|EEX51785.1| NADH-ubiquinone oxidoreductase [Prevotella sp. oral taxon 472 str. F0295] Length = 176 Score = 88.6 bits (218), Expect = 2e-16, Method: Composition-based stats. Identities = 40/134 (29%), Positives = 62/134 (46%), Gaps = 6/134 (4%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEK---GSTSPRFRGEHALRRYPNGEERCIACKLC 69 +K + LR +F K T YP + + R RG ++R N +C+AC +C Sbjct: 16 IKSLTTGLRVTLREYFTPKVTEQYPENRKTTLHVAQRSRGRLVMKRDENDVVKCVACLMC 75 Query: 70 EAICPAQAITIESGP---RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 E CP I I S R+ ++YD D+ C++C LC AC DAI +FE Sbjct: 76 EKACPNGTIRIVSEMVTTEEGKKKRQLIKYDYDLGDCMFCELCTNACNFDAIEFTNDFEN 135 Query: 127 ATETRQELYYDKER 140 + R +L + ++ Sbjct: 136 SVFNRDKLVIELDK 149 >gi|167044394|gb|ABZ09071.1| putative 4Fe-4S binding domain protein [uncultured marine crenarchaeote HF4000_APKG6D3] Length = 165 Score = 88.6 bits (218), Expect = 2e-16, Method: Composition-based stats. Identities = 34/144 (23%), Positives = 60/144 (41%), Gaps = 21/144 (14%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTS--------------PRFRGEHALRRYPNG 59 + A +++ + T YP +K ++G H L Sbjct: 5 SGIIKALNSGIKHIATKRFTFRYPEQKLKFVGDGYQYDPDSGVGIAGYKGRHILFHD--- 61 Query: 60 EERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 +C C+LC C A+AI + P ++ + ID KC++CGLC +ACP A Sbjct: 62 --KCTGCQLCAIACEDIAEAIAMVKVPEQWKHNKKAIMPQIDYGKCVFCGLCVDACPFYA 119 Query: 118 IVEGPNFEFATETRQELYYDKERL 141 + ++E ++ T++ L Y +L Sbjct: 120 LYMTNDYELSSFTKEALIYTPAQL 143 >gi|333031510|ref|ZP_08459571.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Bacteroides coprosuis DSM 18011] gi|332742107|gb|EGJ72589.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Bacteroides coprosuis DSM 18011] Length = 154 Score = 88.6 bits (218), Expect = 2e-16, Method: Composition-based stats. Identities = 41/149 (27%), Positives = 61/149 (40%), Gaps = 10/149 (6%) Query: 1 MRIFRCNVSFLF--LKEFVGAFFLCLRYFFKAKTTINYPF--EKGSTSPRFRGEHALRRY 56 M + + + + + L+ FF K T YP E RFRG + Sbjct: 5 MGNKKSYIQKIISAISSLTTGMRVTLKEFFTPKVTQCYPENRETLVIPERFRGTLEMPHD 64 Query: 57 PNGEERCIACKLCEAICPAQAITIESG----PRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 +G +CIAC LC+ CP I + S ++ V Y ++ C+YC LC + Sbjct: 65 EDGNNKCIACGLCQNACPNGTIEVISEMVVDEETGKKKKKLVDYKYNLGSCMYCNLCVDV 124 Query: 113 CPVDAIVEGPNFEFATETRQ--ELYYDKE 139 CP AI FE A + EL +K+ Sbjct: 125 CPTKAIRFNNKFEHAVFDKTVLELKLNKK 153 >gi|282881435|ref|ZP_06290109.1| 4Fe-4S binding domain protein [Prevotella timonensis CRIS 5C-B1] gi|281304661|gb|EFA96747.1| 4Fe-4S binding domain protein [Prevotella timonensis CRIS 5C-B1] Length = 177 Score = 88.6 bits (218), Expect = 2e-16, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 59/138 (42%), Gaps = 7/138 (5%) Query: 10 FLFLKEFVGAFFLCLRYFFKAKTTINYPFEK---GSTSPRFRGEHALRRYPNGEERCIAC 66 + +K V + L+ +F K+T YP + + R RG +R +G C+AC Sbjct: 12 WYAIKSLVTGLRVTLKEYFTPKSTEQYPENRKTTLHVAQRHRGRLVFKRNEDGTHNCVAC 71 Query: 67 KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 +CE CP + I + ++ V Y + C++C LC +C +AI Sbjct: 72 TMCEKACPNETILIKSEMVVNEETGKKKKQLVDYQYKLGDCMFCQLCVNSCNFNAIEFTN 131 Query: 123 NFEFATETRQELYYDKER 140 +FE + R L ++ Sbjct: 132 DFENSVFERDSLTMHLDK 149 >gi|298373153|ref|ZP_06983143.1| NADH dehydrogenase I, I subunit [Bacteroidetes oral taxon 274 str. F0058] gi|298276057|gb|EFI17608.1| NADH dehydrogenase I, I subunit [Bacteroidetes oral taxon 274 str. F0058] Length = 177 Score = 88.6 bits (218), Expect = 2e-16, Method: Composition-based stats. Identities = 41/147 (27%), Positives = 63/147 (42%), Gaps = 10/147 (6%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPN-- 58 M+ + + + + ++ + + K T YP +G SP R L N Sbjct: 1 MKYIKEFFTAI--WRLMQGMYISMCNMLRPKVTEAYPENRGKVSPAPRMRSLLTMPHNSD 58 Query: 59 GEERCIACKLCEAICPAQAITIES----GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 +C AC +CE+ CP I + + P R RY D+ CI+C LC CP Sbjct: 59 NYNKCTACGVCESNCPNGTIQVITKKVVDPETGKEKRVLDRYLYDVGSCIFCALCTYTCP 118 Query: 115 VDAIVEGPNFEFATETRQELYY--DKE 139 DAI G +FE + ++ L Y +KE Sbjct: 119 FDAIHWGTDFEHSVYSKDRLLYRLNKE 145 >gi|75299143|sp|Q85Y15|NDHI_PHODC RecName: Full=NAD(P)H-quinone oxidoreductase subunit I, chloroplastic; AltName: Full=NAD(P)H dehydrogenase subunit I; Short=NDH subunit I; AltName: Full=NADH-plastoquinone oxidoreductase subunit I gi|28195673|gb|AAO27803.1| NADH dehydrogenase subunit I [Phoenix dactylifera] Length = 163 Score = 88.6 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 36/118 (30%), Positives = 55/118 (46%), Gaps = 5/118 (4%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFVITLSHTNRLPITIQYPYEKSITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 ++ ++ + Y ID CI+CG C E CP + + +E +T R E Sbjct: 77 DLPVVDWRFERDIKKKQLLNYSIDFGVCIFCGNCVEYCPTNCLSMTEEYELSTSDRHE 134 >gi|307566001|ref|ZP_07628459.1| 4Fe-4S binding domain protein [Prevotella amnii CRIS 21A-A] gi|307345189|gb|EFN90568.1| 4Fe-4S binding domain protein [Prevotella amnii CRIS 21A-A] Length = 177 Score = 88.2 bits (217), Expect = 3e-16, Method: Composition-based stats. Identities = 38/134 (28%), Positives = 58/134 (43%), Gaps = 6/134 (4%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEK---GSTSPRFRGEHALRRYPNGEERCIACKLC 69 LK + ++ +F K+T YP + + R RG R G +C AC +C Sbjct: 16 LKTLATGLKVTMKEYFTPKSTEQYPENRKTTLHVAARHRGRLTFIRDEEGNYKCTACTMC 75 Query: 70 EAICPAQAITIESGPRCHDGTRRTVR---YDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 E CP I I S ++ R+ + Y D+ C++C LC AC AI +FE Sbjct: 76 EKACPNGTIRILSQMVTNEEGRKKKQLVDYQYDLGDCMFCELCTNACGFGAIEFTNDFEN 135 Query: 127 ATETRQELYYDKER 140 A R +L ++ Sbjct: 136 AVFDRSKLVLHLDK 149 >gi|323345260|ref|ZP_08085483.1| NADH-quinone oxidoreductase subunit I [Prevotella oralis ATCC 33269] gi|323093374|gb|EFZ35952.1| NADH-quinone oxidoreductase subunit I [Prevotella oralis ATCC 33269] Length = 177 Score = 88.2 bits (217), Expect = 3e-16, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 60/149 (40%), Gaps = 9/149 (6%) Query: 1 MRIFRCNVSFLF--LKEFVGAFFLCLRYFFKAKTTINYPFEK---GSTSPRFRGEHALRR 55 M + S + +K + + + K+T YP + + R RG +R Sbjct: 1 MENKQSYFSGILDGVKSLATGLGVTFKEYLTPKSTEQYPENRKTTLHVAKRHRGRLVFKR 60 Query: 56 YPNGEERCIACKLCEAICPAQ----AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 +G +C+AC +CE CP + + R+ V Y D+ C++C LC Sbjct: 61 DDDGNHKCVACLMCEKACPNGTIKIMSEMVTNEETGRKKRQLVDYQYDLGDCMFCQLCVN 120 Query: 112 ACPVDAIVEGPNFEFATETRQELYYDKER 140 AC D+I +FE + R L ++ Sbjct: 121 ACNFDSIEFTNDFENSVFDRNTLVLHLDK 149 >gi|162456309|ref|YP_001618676.1| putative NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56'] gi|161166891|emb|CAN98196.1| putative NADH dehydrogenase (ubiquinone) [Sorangium cellulosum 'So ce 56'] Length = 214 Score = 88.2 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 39/129 (30%), Positives = 54/129 (41%), Gaps = 13/129 (10%) Query: 16 FVGAFFLCLRYFFKAKTTINYPF-----EKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70 + + + F+ T+ YP PR+RG ++ C CK CE Sbjct: 17 ILEGMAVTFSHLFREPITVQYPDKTDRPVSEMLPPRYRGFLEVQMD-----ICTGCKRCE 71 Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD---AIVEGPNFEFA 127 CP + I I+ + R+DIDM KC+YCGLC EAC + AI FE A Sbjct: 72 RACPIECIAIDLEKDPATKKQAMSRFDIDMGKCMYCGLCVEACKTESTGAIRHTREFEGA 131 Query: 128 TETRQELYY 136 T L + Sbjct: 132 APTLDHLTF 140 >gi|90578224|ref|ZP_01234035.1| hydrogenase 4 Fe-S subunit [Vibrio angustum S14] gi|90441310|gb|EAS66490.1| hydrogenase 4 Fe-S subunit [Vibrio angustum S14] Length = 182 Score = 88.2 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 41/145 (28%), Positives = 63/145 (43%), Gaps = 13/145 (8%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 L+ + T YPF + FRG+ L ++C++C C CPA Sbjct: 1 MFKLLKTVLKT---GEVTTKYPFAPLEVNEDFRGKPEL-----DADQCLSCGACMRACPA 52 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A+ +E+ + R+++ M +CIYCG C+E CP AI NFE A +++LY Sbjct: 53 NALVMETDEKSGT-----RRWELSMARCIYCGRCEEVCPTKAIKLSQNFELAVTRKEDLY 107 Query: 136 YDKERLLNNGDRWESEIVRNIVTDS 160 L N + E V + D Sbjct: 108 EHAVFQLANCRQCERPFVAKKLLDY 132 >gi|87306374|ref|ZP_01088521.1| NADH dehydrogenase subunit I [Blastopirellula marina DSM 3645] gi|87290553|gb|EAQ82440.1| NADH dehydrogenase subunit I [Blastopirellula marina DSM 3645] Length = 175 Score = 87.8 bits (216), Expect = 4e-16, Method: Composition-based stats. Identities = 41/149 (27%), Positives = 55/149 (36%), Gaps = 14/149 (9%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKA--------KTTINYPFEKGSTSPRFRGEHA 52 M + NV + + + +RY+F YP SPR+RG H Sbjct: 1 MLTWIRNV-YSAVVTVAEGLSITIRYWFSTYDKDRKAFAEHYEYPELPVQVSPRYRGFHR 59 Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 CIAC C CP I I + ID KC++C LC E Sbjct: 60 -----YDLTTCIACDQCAKACPVDCIYIGKERVEGAKGFAVTGFTIDYTKCMFCALCVEP 114 Query: 113 CPVDAIVEGPNFEFATETRQELYYDKERL 141 CPVD I G + ++ +R D RL Sbjct: 115 CPVDCIFMGGTLDLSSYSRDGAIVDFSRL 143 >gi|189459781|ref|ZP_03008566.1| hypothetical protein BACCOP_00410 [Bacteroides coprocola DSM 17136] gi|189433510|gb|EDV02495.1| hypothetical protein BACCOP_00410 [Bacteroides coprocola DSM 17136] Length = 155 Score = 87.8 bits (216), Expect = 4e-16, Method: Composition-based stats. Identities = 35/145 (24%), Positives = 58/145 (40%), Gaps = 8/145 (5%) Query: 1 MRIFRCNVSFLF--LKEFVGAFFLCLRYFFKAKTTINYPFEKG---STSPRFRGEHALRR 55 M F + +K + ++ F + K T YP + R R + + Sbjct: 1 MESFSEYIKGFASGVKSLLIGMRTSMKVFCQPKVTEQYPENRHTTLHIPERHRAQLVMPH 60 Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---YDIDMIKCIYCGLCQEA 112 CIAC LC+ CP I + S R + ++ Y+ ++ C++C LC A Sbjct: 61 DDENHHHCIACGLCQMACPNGTIKVISEMREDEEGKKKKVLVKYEYNLGSCMFCELCVNA 120 Query: 113 CPVDAIVEGPNFEFATETRQELYYD 137 CP AI +FE A +++L Sbjct: 121 CPHGAIKFSNDFENAVFEKEKLLLT 145 >gi|15897266|ref|NP_341871.1| NADH dehydrogenase subunit I [Sulfolobus solfataricus P2] gi|13813471|gb|AAK40661.1| NADH dehydrogenase subunit I (NuoI) [Sulfolobus solfataricus P2] Length = 188 Score = 87.8 bits (216), Expect = 4e-16, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 20/153 (13%) Query: 12 FLKEFVGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70 E + + ++YF K + T+ YP + + +RG L + CI C LC Sbjct: 36 LFAEHIQSIVTGIKYFVKPQRITLQYPEDSLTLPTGYRGMIRLYKD-----VCIGCTLCA 90 Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 ICPA A+ + + I+ +C++CG C + CPVDA+ E + Sbjct: 91 LICPADAMKMVTESGKKFP-------QINYGRCVFCGFCVDVCPVDALKETKVHDLVFNN 143 Query: 131 RQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 R++L +D DR+ +I + D P R Sbjct: 144 RKQLIFDP-------DRFNVDIDDVPMQDKPVR 169 >gi|110639004|ref|YP_679213.1| NADH:ubiquinone oxidoreductase subunit I [Cytophaga hutchinsonii ATCC 33406] gi|110281685|gb|ABG59871.1| NADH dehydrogenase subunit I [Cytophaga hutchinsonii ATCC 33406] Length = 427 Score = 87.8 bits (216), Expect = 4e-16, Method: Composition-based stats. Identities = 38/174 (21%), Positives = 56/174 (32%), Gaps = 38/174 (21%) Query: 1 MRIFRCNVSFLFLK--EFVGAFFLCLRYFF------KAK----------------TTINY 36 M N+ + L L++FF + T Y Sbjct: 1 MARRISNIRLFIVSVQSMAIGLRLTLKHFFVSIGVKRKPQVGVMDADYFTHKDGIVTNLY 60 Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR----- 91 P E R R N + CI C LC +CP I IE + + Sbjct: 61 PHESIPVPDNGR-----YRLHNEVDDCIVCDLCAKVCPVNCIEIEPIKSPVEIGKTSDGS 115 Query: 92 ----RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERL 141 +DIDM KC +CGLC CP + + ++F+ + + Y L Sbjct: 116 TKRIYAATFDIDMAKCCFCGLCTTVCPTECLTMTKTYDFSEYDVRNMVYHFAEL 169 >gi|307611651|emb|CBX01339.1| NADH-quinone oxidoreductase chain I [Legionella pneumophila 130b] Length = 138 Score = 87.8 bits (216), Expect = 5e-16, Method: Composition-based stats. Identities = 60/88 (68%), Positives = 69/88 (78%), Gaps = 1/88 (1%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 ++YFF+ K T+ +P E+ SPRFRG ALRRYPNGEERCIACKLCEA+CPA AITIES Sbjct: 27 TVKYFFRKKITVQFPEEQTPLSPRFRGLLALRRYPNGEERCIACKLCEAVCPALAITIES 86 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 R G+RRT RYDIDM KCI CGLC+ Sbjct: 87 EQRDD-GSRRTTRYDIDMFKCINCGLCE 113 >gi|319901162|ref|YP_004160890.1| NADH dehydrogenase I, chain I [Bacteroides helcogenes P 36-108] gi|319416193|gb|ADV43304.1| NADH dehydrogenase I, chain I [Bacteroides helcogenes P 36-108] Length = 176 Score = 87.5 bits (215), Expect = 5e-16, Method: Composition-based stats. Identities = 40/130 (30%), Positives = 55/130 (42%), Gaps = 5/130 (3%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEK--GSTSPRFRGEHALRRYPNGEERCIACKLCE 70 + + + F + KTT YP + SPRFRG + N E RC+AC LC+ Sbjct: 14 IGSLLTGMKTSMTVFLRQKTTEQYPENRATLKLSPRFRGTLIMPHNDNNEHRCVACGLCQ 73 Query: 71 AICPAQ---AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CP + + +Y+ D+ C++C LC ACP DAI NFE A Sbjct: 74 MACPNDTIRVTSHTVETEDGKKKKVLEKYEYDLGSCMFCQLCVNACPHDAITFDQNFEHA 133 Query: 128 TETRQELYYD 137 R L Sbjct: 134 VFDRTRLVLT 143 >gi|258514495|ref|YP_003190717.1| NADH-quinone oxidoreductase, chain I [Desulfotomaculum acetoxidans DSM 771] gi|257778200|gb|ACV62094.1| NADH-quinone oxidoreductase, chain I [Desulfotomaculum acetoxidans DSM 771] Length = 160 Score = 87.5 bits (215), Expect = 5e-16, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 7/119 (5%) Query: 11 LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70 +F + + + + F+ K T+ YP EK RF G L ++CIAC LC Sbjct: 1 MFGRGLLKGLQVTWKEFWTPKFTVQYPEEKHPVPARFHGRFVL-----DADKCIACNLCA 55 Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 CP + I I + + Y +++ C++CGLC EAC DAI +F Sbjct: 56 NACPNRVINIVTAKVGT--KKYLTNYVMNIQYCLFCGLCVEACNKDAIHFSDDFGMTQY 112 >gi|238598205|ref|XP_002394547.1| hypothetical protein MPER_05550 [Moniliophthora perniciosa FA553] gi|215463730|gb|EEB95477.1| hypothetical protein MPER_05550 [Moniliophthora perniciosa FA553] Length = 81 Score = 87.5 bits (215), Expect = 5e-16, Method: Composition-based stats. Identities = 45/71 (63%), Positives = 51/71 (71%) Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNG 145 + DIDM KCIYCG CQEACPVDAIVE N EFATETR+EL Y+KE+LL NG Sbjct: 1 PRWTFQADHENDIDMTKCIYCGFCQEACPVDAIVETQNQEFATETREELMYNKEKLLANG 60 Query: 146 DRWESEIVRNI 156 DR E+EI N+ Sbjct: 61 DRAEAEIAANL 71 >gi|332796874|ref|YP_004458374.1| NADH-quinone oxidoreductase, chain I [Acidianus hospitalis W1] gi|332694609|gb|AEE94076.1| NADH-quinone oxidoreductase, chain I [Acidianus hospitalis W1] Length = 164 Score = 87.5 bits (215), Expect = 6e-16, Method: Composition-based stats. Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 13/136 (9%) Query: 12 FLKEFVGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70 + + + ++Y K + T+ YP E + +RG L + CI C LC Sbjct: 14 LFVDHLQSIGTGIKYMVKPQRITLKYPEESLTLPTGYRGIIRLYKD-----VCIGCTLCA 68 Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 ICPA A+ + + + I+ +C++CG C + CPVDA+ E + A Sbjct: 69 MICPADAMKMMT-------YQGKKLPTINYGRCVFCGFCVDICPVDALKETGVHDVAFSN 121 Query: 131 RQELYYDKERLLNNGD 146 R++L +D E+ N D Sbjct: 122 RRDLIFDPEKFNKNFD 137 >gi|53712158|ref|YP_098150.1| NADH dehydrogenase I chain I [Bacteroides fragilis YCH46] gi|60680342|ref|YP_210486.1| putative NADH dehydrogenase I subunit I [Bacteroides fragilis NCTC 9343] gi|253563804|ref|ZP_04841261.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|265765489|ref|ZP_06093764.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|52215023|dbj|BAD47616.1| NADH dehydrogenase I chain I [Bacteroides fragilis YCH46] gi|60491776|emb|CAH06534.1| putative NADH dehydrogenase I subunit I [Bacteroides fragilis NCTC 9343] gi|251947580|gb|EES87862.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|263254873|gb|EEZ26307.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|301161875|emb|CBW21419.1| putative NADH dehydrogenase I subunit I [Bacteroides fragilis 638R] Length = 159 Score = 87.1 bits (214), Expect = 7e-16, Method: Composition-based stats. Identities = 39/129 (30%), Positives = 58/129 (44%), Gaps = 5/129 (3%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGS--TSPRFRGEHALRRYPNGEERCIACKLCE 70 + + ++ +F+ K T YP + RFRG + N E RC+AC LC+ Sbjct: 16 IGSLLTGMKTTIKVYFRKKVTEQYPENRAELKMFDRFRGTLNMPHNENNEHRCVACGLCQ 75 Query: 71 AICPAQAITIESGPRCHDGTRRTV---RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CP I + S + ++ +Y+ D+ CI+C LC ACP DAI FE A Sbjct: 76 MACPNDTIKVTSETIETEEGKKKKILAKYEYDLGSCIFCQLCVNACPHDAITFDQVFEHA 135 Query: 128 TETRQELYY 136 R +L Sbjct: 136 VFDRTKLVL 144 >gi|89895329|ref|YP_518816.1| NADH dehydrogenase I chain I [Desulfitobacterium hafniense Y51] gi|219669763|ref|YP_002460198.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfitobacterium hafniense DCB-2] gi|89334777|dbj|BAE84372.1| NADH dehydrogenase I chain I [Desulfitobacterium hafniense Y51] gi|219540023|gb|ACL21762.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfitobacterium hafniense DCB-2] Length = 135 Score = 87.1 bits (214), Expect = 7e-16, Method: Composition-based stats. Identities = 34/128 (26%), Positives = 56/128 (43%), Gaps = 6/128 (4%) Query: 11 LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70 + K + + L+ T YP + R L +CI+C LC Sbjct: 1 MLGKGLLTGMGIVLKKMLGPNITEFYPEVMPNLPKTVRSSMGLEPD-----KCISCTLCA 55 Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 CP + IT+ S + + Y +D+ +C++CGLC EACP +A+ FE + Sbjct: 56 LACPNKVITLTSEKD-ENNKKVLKTYHMDVGRCLFCGLCTEACPTNALTVTQEFENSVFY 114 Query: 131 RQELYYDK 138 ++LY+D Sbjct: 115 PEDLYWDM 122 >gi|284174515|ref|ZP_06388484.1| NADH dehydrogenase subunit I [Sulfolobus solfataricus 98/2] gi|261601935|gb|ACX91538.1| NADH-quinone oxidoreductase, chain I [Sulfolobus solfataricus 98/2] Length = 167 Score = 87.1 bits (214), Expect = 7e-16, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 66/153 (43%), Gaps = 20/153 (13%) Query: 12 FLKEFVGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70 E + + ++YF K + T+ YP + + +RG L + CI C LC Sbjct: 15 LFAEHIQSIVTGIKYFVKPQRITLQYPEDSLTLPTGYRGMIRLYKD-----VCIGCTLCA 69 Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 ICPA A+ + + I+ +C++CG C + CPVDA+ E + Sbjct: 70 LICPADAMKMVTESGKKFP-------QINYGRCVFCGFCVDVCPVDALKETKVHDLVFNN 122 Query: 131 RQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 R++L +D DR+ +I + D P R Sbjct: 123 RKQLIFDP-------DRFNVDIDDVPMQDKPVR 148 >gi|303237635|ref|ZP_07324195.1| 4Fe-4S binding domain protein [Prevotella disiens FB035-09AN] gi|302482087|gb|EFL45122.1| 4Fe-4S binding domain protein [Prevotella disiens FB035-09AN] Length = 177 Score = 87.1 bits (214), Expect = 7e-16, Method: Composition-based stats. Identities = 40/132 (30%), Positives = 58/132 (43%), Gaps = 7/132 (5%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEK---GSTSPRFRGEHALRRYPNGEERCIACKLC 69 K ++ +F K+T YP + + R RG +R + +C+AC +C Sbjct: 15 FKTLATGLKTTMKEYFTPKSTEQYPENRKTTLHVAERHRGRLVFKRDESENYKCVACLMC 74 Query: 70 EAICPAQAITIESGPRCHDGTRRTVR----YDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 E CP I I+S R + T + R Y DM C++C LC AC DAI +FE Sbjct: 75 EKACPNGTIRIKSEMRENPETGKKKRVLLDYQYDMGDCMFCQLCVNACNFDAIKFTNDFE 134 Query: 126 FATETRQELYYD 137 A R +L Sbjct: 135 NAVFDRSKLVLH 146 >gi|323388073|gb|ADX60298.1| hypothetical protein [Furcellaria lumbricalis] Length = 59 Score = 87.1 bits (214), Expect = 8e-16, Method: Composition-based stats. Identities = 42/59 (71%), Positives = 49/59 (83%) Query: 105 YCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 +CG CQEACPVDAIVEGPN+E+ TET +EL Y+KE LL NGDRWESEI +NI +S YR Sbjct: 1 FCGACQEACPVDAIVEGPNYEYGTETHEELLYNKETLLENGDRWESEIAKNIENESMYR 59 >gi|284039760|ref|YP_003389690.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Spirosoma linguale DSM 74] gi|283819053|gb|ADB40891.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Spirosoma linguale DSM 74] Length = 507 Score = 87.1 bits (214), Expect = 8e-16, Method: Composition-based stats. Identities = 43/170 (25%), Positives = 64/170 (37%), Gaps = 36/170 (21%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAK--------------------TTINYPFEK 40 M F+ S + + L LR+ A T+ YP+E+ Sbjct: 1 MSYFKDIQSGIRTT--LKGLSLTLRHLRNATKRRTAEGIASDSYFDLQNGLVTLQYPYEQ 58 Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR--------- 91 G + LR N E CI C C +CP ITI++ + R Sbjct: 59 LPIPDN--GRYRLR---NEIEDCIVCDKCAKVCPVDCITIDAIKATEEVGRASDGSPIRL 113 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERL 141 ++DIDM KC YCGLC CP + + F+++ +L Y+ L Sbjct: 114 YAAKFDIDMAKCCYCGLCTVVCPTECLTMDKKFDYSEFELGKLTYNFSNL 163 >gi|304382884|ref|ZP_07365367.1| NADH-quinone oxidoreductase subunit I [Prevotella marshii DSM 16973] gi|304336069|gb|EFM02316.1| NADH-quinone oxidoreductase subunit I [Prevotella marshii DSM 16973] Length = 190 Score = 86.7 bits (213), Expect = 9e-16, Method: Composition-based stats. Identities = 37/128 (28%), Positives = 57/128 (44%), Gaps = 5/128 (3%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKG--STSPRFRGEHALRRYPNGEERCIACKLCE 70 + + + + +F K T YP + S R R + NG +C+AC+LC+ Sbjct: 16 MSSLLTGLGVTWKEYFTKKVTEQYPENRKTEHISERHRAILTMPHDENGVNKCVACELCQ 75 Query: 71 AICPAQAITIESGPRCHDGTRRT---VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CP IT+ S + ++ Y D+ C++C LC +ACP DAI NFE + Sbjct: 76 KACPNGTITVLSQMVVKEDGKKKKLLTDYVYDLGDCMFCNLCVDACPHDAIRFSNNFENS 135 Query: 128 TETRQELY 135 R L Sbjct: 136 VFDRNVLV 143 >gi|282877797|ref|ZP_06286610.1| 4Fe-4S binding domain protein [Prevotella buccalis ATCC 35310] gi|281300113|gb|EFA92469.1| 4Fe-4S binding domain protein [Prevotella buccalis ATCC 35310] Length = 177 Score = 86.7 bits (213), Expect = 9e-16, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 57/134 (42%), Gaps = 7/134 (5%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEK---GSTSPRFRGEHALRRYPNGEERCIACKLCE 70 K V + L+ +F K+T YP + + R RG +R +G C+AC +CE Sbjct: 16 KSLVTGLRVTLKEYFTPKSTEQYPENRKTTLHVAQRHRGRLVFKRNEDGTHNCVACTMCE 75 Query: 71 AICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 CP + I + ++ V Y + C++C LC +C +AI +FE Sbjct: 76 KACPNETILIKSEMVVNEETGRKKKQLVDYQYKLGDCMFCQLCVNSCNFNAIEFTNDFEN 135 Query: 127 ATETRQELYYDKER 140 + R L ++ Sbjct: 136 SVFERDSLTMHLDK 149 >gi|123443020|ref|YP_001006995.1| hydrogenase 4 subunit H [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122089981|emb|CAL12838.1| hydrogenase-4 component H [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 195 Score = 86.7 bits (213), Expect = 1e-15, Method: Composition-based stats. Identities = 42/142 (29%), Positives = 63/142 (44%), Gaps = 11/142 (7%) Query: 20 FFLCLRYFFK-AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78 F + K TT+ YPF+ S FRG+ E+CIAC C CPA A+ Sbjct: 1 MFKLFKTLLKVGDTTVKYPFKPLEVSHGFRGKP-----QYDAEQCIACGACTMACPANAL 55 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 T+E+ + T ++ + + +CI+CG C+E CP AIV FE A + +LY Sbjct: 56 TMETDI-----IKGTRQWQLFLGRCIFCGRCEEVCPTRAIVLSQEFELAVFNKADLYQHA 110 Query: 139 ERLLNNGDRWESEIVRNIVTDS 160 L + + + D Sbjct: 111 TFTLAHCQQCQKPFAPKKEVDY 132 >gi|83591008|ref|YP_431017.1| formate hydrogenlyase complex iron-sulfur subunit [Moorella thermoacetica ATCC 39073] gi|83573922|gb|ABC20474.1| NADH dehydrogenase subunit I [Moorella thermoacetica ATCC 39073] Length = 184 Score = 86.3 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 40/142 (28%), Positives = 59/142 (41%), Gaps = 10/142 (7%) Query: 19 AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78 L + + T+ YPF+ +P FRG+ RCIAC C CP AI Sbjct: 1 MLKLLKKALQVGEATVEYPFKPVEVAPGFRGKPEYNFD-----RCIACGACATACPPNAI 55 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 T+E + ++I +CI+CG C+E CP AI FE A ++++LYY Sbjct: 56 TMEYDLKQGT-----KTWNIFYGRCIFCGRCEEVCPTGAIALTTEFELAVASKEDLYYRA 110 Query: 139 ERLLNNGDRWESEIVRNIVTDS 160 E L + + Sbjct: 111 EVQLRKCSCCGEYFAPSRELEY 132 >gi|198276155|ref|ZP_03208686.1| hypothetical protein BACPLE_02344 [Bacteroides plebeius DSM 17135] gi|198270967|gb|EDY95237.1| hypothetical protein BACPLE_02344 [Bacteroides plebeius DSM 17135] Length = 149 Score = 86.3 bits (212), Expect = 1e-15, Method: Composition-based stats. Identities = 35/148 (23%), Positives = 62/148 (41%), Gaps = 8/148 (5%) Query: 1 MRIFRCNVSFLF--LKEFVGAFFLCLRYFFKAKTTINYPFEKG---STSPRFRGEHALRR 55 M F+ + +K + ++ F + K T YP + R R + Sbjct: 1 MNGFKEYLKGYVGGVKSLLVGMRTSMKVFCQKKITEQYPENRHTTLHIPERHRAMLVMPV 60 Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV---RYDIDMIKCIYCGLCQEA 112 G CIAC LC+ CP I + + R + ++ +Y+ ++ C++C LC A Sbjct: 61 DEEGNHHCIACGLCQMSCPNGTIRLTTEMRETEDGKKKKFLVKYEYNLGSCMFCMLCVNA 120 Query: 113 CPVDAIVEGPNFEFATETRQELYYDKER 140 CP +AI +FE A +++L + Sbjct: 121 CPHNAIQFTNDFENAVFQKEKLVMTLNK 148 >gi|318604975|emb|CBY26473.1| formate hydrogenlyase complex 3 iron-sulfur protein; Formate hydrogenlyase subunit 6; Ni,Fe-hydrogenase III medium subunit [Yersinia enterocolitica subsp. palearctica Y11] Length = 195 Score = 85.9 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 43/145 (29%), Positives = 65/145 (44%), Gaps = 13/145 (8%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + F L+ TT+ YPF+ S FRG+ E+CIAC C CPA Sbjct: 1 MLKLFKTILKV---GDTTVKYPFKPLEVSHGFRGKP-----QYDAEQCIACGACTMACPA 52 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A+T+E+ + T ++ + + +CI+CG C+E CP AIV P FE A + +LY Sbjct: 53 NALTMETD-----FAKGTRQWQLFLGRCIFCGRCEEVCPTRAIVLSPEFELAVFNKADLY 107 Query: 136 YDKERLLNNGDRWESEIVRNIVTDS 160 L + + + D Sbjct: 108 QRATFTLAHCQQCQKPFAPKKEVDY 132 >gi|116754360|ref|YP_843478.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanosaeta thermophila PT] gi|116665811|gb|ABK14838.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Methanosaeta thermophila PT] Length = 180 Score = 85.9 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 54/148 (36%), Gaps = 9/148 (6%) Query: 16 FVGAFFLCLRYFFKAK-TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP 74 + + L+ T YP RG H L CI C C +CP Sbjct: 2 VLKSLKYTLKTALTTTEVTRLYPEVMMELPANERGIHEL-----DATTCIGCGSCARVCP 56 Query: 75 AQAITIESGPRC-HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 I + R+ ID +C +CGLC + CPV + G E A R++ Sbjct: 57 NSCIEMVPYKYGNPLKNRKMQFPQIDYGRCTFCGLCVDECPVSCLKMGKRTEIAGWDRKD 116 Query: 134 LYYDKERLLNNGDRWESEIVRNIVTDSP 161 + Y +R+ ++ + V + ++ Sbjct: 117 IVYGPDRIAV--KKFSDKEVAELEAEAK 142 >gi|73670845|ref|YP_306860.1| F420H2 dehydrogenase subunit I [Methanosarcina barkeri str. Fusaro] gi|72398007|gb|AAZ72280.1| F420H2 dehydrogenase subunit I [Methanosarcina barkeri str. Fusaro] Length = 136 Score = 85.9 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 38/139 (27%), Positives = 57/139 (41%), Gaps = 12/139 (8%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + +R + T YP ++ S RFRG L + +CI C +C CP Sbjct: 2 VLKNIKYAIRNITRPPVTRMYPEKQSELSDRFRGLQIL-----DKSKCIGCGICANTCPN 56 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE--FATETRQE 133 AI I P T++ ID+ C++CGLC + CP A+ G + ++ Sbjct: 57 AAIKIVKAPIAPGSTKQRWFPQIDIGHCLFCGLCIDQCPKGALSSGKEYAKGLVKWKHKD 116 Query: 134 LYYDKERL-----LNNGDR 147 L E+L L GD Sbjct: 117 LLITPEKLAREVDLEEGDE 135 >gi|332161096|ref|YP_004297673.1| hydrogenase 4 subunit H [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325665326|gb|ADZ41970.1| hydrogenase 4 subunit H [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330863808|emb|CBX73903.1| hydrogenase-4 component H [Yersinia enterocolitica W22703] Length = 195 Score = 85.5 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 43/145 (29%), Positives = 64/145 (44%), Gaps = 13/145 (8%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + F L+ TT+ YPF+ S FRG+ E+CIAC C CPA Sbjct: 1 MLKLFKTILKV---GDTTVKYPFKPLEVSHGFRGKP-----QYDAEQCIACGACTMACPA 52 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A+T+E+ + T ++ + + CI+CG C+E CP AIV P FE A + +LY Sbjct: 53 NALTMETDLA-----KGTRQWQLFLGHCIFCGRCEEVCPTRAIVLSPEFELAVFNKADLY 107 Query: 136 YDKERLLNNGDRWESEIVRNIVTDS 160 L + + + D Sbjct: 108 QRATFTLAHCQQCQKPFAPKKEVDY 132 >gi|21228588|ref|NP_634510.1| F420H2 dehydrogenase subunit [Methanosarcina mazei Go1] gi|20907082|gb|AAM32182.1| F420H2 dehydrogenase subunit [Methanosarcina mazei Go1] Length = 177 Score = 85.5 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 35/131 (26%), Positives = 53/131 (40%), Gaps = 7/131 (5%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 L + L+ K + T P + S RFRG L + +CI C +C Sbjct: 40 LSMVLKNIKYALKNIPKERVTRLCPEVESPLSERFRGLQTL-----DKSKCIGCGICANT 94 Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF--EFATET 130 CP AI I P ++ ID+ C++CGLC + CP A+ G + Sbjct: 95 CPNSAIKIVKAPIAPGSEKKRWFPQIDIGHCLFCGLCIDQCPKGALSSGKEYCKGMVKWA 154 Query: 131 RQELYYDKERL 141 ++L E+L Sbjct: 155 HKDLLMTPEKL 165 >gi|227488700|ref|ZP_03919016.1| NADH dehydrogenase subunit I [Corynebacterium glucuronolyticum ATCC 51867] gi|227091361|gb|EEI26673.1| NADH dehydrogenase subunit I [Corynebacterium glucuronolyticum ATCC 51867] Length = 136 Score = 85.5 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 38/73 (52%) Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134 +A R G R Y+I+ ++CI+CG+C EACP A+ FE A +R+ L Sbjct: 1 MEAAANTDEERYSPGERYGKVYEINYLRCIFCGMCIEACPTRALTMTNEFELANVSREAL 60 Query: 135 YYDKERLLNNGDR 147 Y K++LL + Sbjct: 61 IYGKDKLLAPLED 73 >gi|29349471|ref|NP_812974.1| NADH dehydrogenase I subunit I [Bacteroides thetaiotaomicron VPI-5482] gi|253570159|ref|ZP_04847568.1| NADH dehydrogenase subunit I [Bacteroides sp. 1_1_6] gi|29341380|gb|AAO79168.1| NADH dehydrogenase I, chain I [Bacteroides thetaiotaomicron VPI-5482] gi|251840540|gb|EES68622.1| NADH dehydrogenase subunit I [Bacteroides sp. 1_1_6] Length = 162 Score = 85.5 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 5/129 (3%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGS--TSPRFRGEHALRRYPNGEERCIACKLCE 70 + ++ +F+ K T YP + RFRG A+ N E RC+AC LC+ Sbjct: 18 ISTLATGMKTSIKVYFRKKVTEQYPENRKELKMFDRFRGTLAMPHNENNEHRCVACGLCQ 77 Query: 71 AICPAQAITIESGPRCHDGTRRTV---RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CP IT+ S + ++ +Y+ D+ C++C LC ACP DAI NFE A Sbjct: 78 IACPNDTITVTSETIETEDGKKKKILAKYEYDLGACMFCQLCVNACPHDAITFDQNFEHA 137 Query: 128 TETRQELYY 136 R +L Sbjct: 138 VFDRTKLVL 146 >gi|298384970|ref|ZP_06994529.1| NADH-ubiquinone oxidoreductase, NQO9 subunit (NQO9) [Bacteroides sp. 1_1_14] gi|298262114|gb|EFI04979.1| NADH-ubiquinone oxidoreductase, NQO9 subunit (NQO9) [Bacteroides sp. 1_1_14] Length = 162 Score = 85.5 bits (210), Expect = 2e-15, Method: Composition-based stats. Identities = 41/129 (31%), Positives = 60/129 (46%), Gaps = 5/129 (3%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGS--TSPRFRGEHALRRYPNGEERCIACKLCE 70 + ++ +F+ K T YP + RFRG A+ N E RC+AC LC+ Sbjct: 18 ISTLATGMKTSIKVYFRKKVTEQYPENRKELKMFDRFRGTLAMPHNENNEHRCVACGLCQ 77 Query: 71 AICPAQAITIESGPRCHDGTRRTV---RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CP IT+ S + ++ +Y+ D+ C++C LC ACP DAI NFE A Sbjct: 78 IACPNDTITVTSETIETEDGKKKKILAKYEYDLGACMFCQLCVNACPHDAITFDQNFEHA 137 Query: 128 TETRQELYY 136 R +L Sbjct: 138 VFDRTKLVL 146 >gi|325298886|ref|YP_004258803.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Bacteroides salanitronis DSM 18170] gi|324318439|gb|ADY36330.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Bacteroides salanitronis DSM 18170] Length = 155 Score = 85.2 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 34/145 (23%), Positives = 55/145 (37%), Gaps = 8/145 (5%) Query: 1 MRIFRCNVSFLF--LKEFVGAFFLCLRYFFKAKTTINYPFEKG---STSPRFRGEHALRR 55 M F + LK + ++ F + K T YP + R R + Sbjct: 1 MESFSDYIKGYASGLKSLLVGLRTSMKVFLEPKVTEQYPENRHTTLHIPERHRARLTMIH 60 Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---YDIDMIKCIYCGLCQEA 112 CIAC LC+ CP I + + R ++ Y+ ++ C++C LC Sbjct: 61 DEENHHHCIACGLCQMNCPNGTIKLTTEMREDADGKKKKVLVKYEYNLGSCMFCNLCVNV 120 Query: 113 CPVDAIVEGPNFEFATETRQELYYD 137 CP +AI +FE A + +L Sbjct: 121 CPHNAIEFCNDFENAVFEKDKLVLT 145 >gi|220916479|ref|YP_002491783.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219954333|gb|ACL64717.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 267 Score = 85.2 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 45/124 (36%), Gaps = 1/124 (0%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 K F + L Y + TT+ YP C C+ CE C Sbjct: 17 KSFWHGLSITLSYLARRPTTVQYPDRTPMPVRDMLPPRYRGFLEVDTGICTGCQACERAC 76 Query: 74 PAQAITIESGPRC-HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 P I I + R ++DID KC++CGLC E CP +I FE + Sbjct: 77 PIGCIQISLEKDAANPKQRVVTQFDIDEAKCMFCGLCVEPCPTGSIQHTREFEGTHRHIR 136 Query: 133 ELYY 136 L + Sbjct: 137 NLVF 140 >gi|197121683|ref|YP_002133634.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Anaeromyxobacter sp. K] gi|196171532|gb|ACG72505.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Anaeromyxobacter sp. K] Length = 270 Score = 85.2 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 45/124 (36%), Gaps = 1/124 (0%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 K F + L Y + TT+ YP C C+ CE C Sbjct: 17 KSFWHGLSITLSYLARRPTTVQYPDRTPMPVRDMLPPRYRGFLEVDTGICTGCQACERAC 76 Query: 74 PAQAITIESGPRC-HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 P I I + R ++DID KC++CGLC E CP +I FE + Sbjct: 77 PIGCIQISLEKDAANPKQRVVTQFDIDEAKCMFCGLCVEPCPTGSIQHTREFEGTHRHIR 136 Query: 133 ELYY 136 L + Sbjct: 137 NLVF 140 >gi|240102772|ref|YP_002959081.1| NADH dehydrogenase subunit I [Thermococcus gammatolerans EJ3] gi|239910326|gb|ACS33217.1| membrane bound oxidoreductase, MbxN subunit (MbxN) [Thermococcus gammatolerans EJ3] Length = 238 Score = 85.2 bits (209), Expect = 3e-15, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 64/154 (41%), Gaps = 17/154 (11%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80 ++ ++Y FK TI PFEK +P++RG H L ++C+ C C ICPA+AI + Sbjct: 23 WMGIKYLFKKPVTIKIPFEKIEPAPKYRGFHTL-----DWKKCVGCNFCGQICPARAIEM 77 Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY----- 135 +R ID +C +C C + CP A+ + T+ ++ Sbjct: 78 TWLEVDGKMEKRP-HPKIDYGRCTFCQFCVDVCPTGALGFSEAYLLTTDGTEDALELFNW 136 Query: 136 --YDKERLLNNGDRWES----EIVRNIVTDSPYR 163 +++ +++ + D YR Sbjct: 137 VPIHPDKVRELNEKFGDYRFPVVKIEKKADGTYR 170 >gi|255691142|ref|ZP_05414817.1| NADH-ubiquinone oxidoreductase, NQO9 subunit [Bacteroides finegoldii DSM 17565] gi|260623235|gb|EEX46106.1| NADH-ubiquinone oxidoreductase, NQO9 subunit [Bacteroides finegoldii DSM 17565] Length = 162 Score = 84.8 bits (208), Expect = 3e-15, Method: Composition-based stats. Identities = 39/129 (30%), Positives = 57/129 (44%), Gaps = 5/129 (3%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGS--TSPRFRGEHALRRYPNGEERCIACKLCE 70 + ++ +F+ K T YP + RFRG + N E RC+AC LC+ Sbjct: 18 ISTLATGMKTSIKVYFRKKVTEQYPENRKELKMFDRFRGTLNMPHNENNEHRCVACGLCQ 77 Query: 71 AICPAQAITIESGPRCHDGTRRTV---RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CP I + + ++ +Y+ D+ CI+C LC ACP DAI NFE A Sbjct: 78 MACPNDTIKVTGETIETEDGKKKKILAKYEYDLGSCIFCQLCVNACPHDAITFDQNFEHA 137 Query: 128 TETRQELYY 136 R +L Sbjct: 138 VFDRTKLVL 146 >gi|86158998|ref|YP_465783.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Anaeromyxobacter dehalogenans 2CP-C] gi|110287756|sp|Q2IL14|NUOI2_ANADE RecName: Full=NADH-quinone oxidoreductase subunit I 2; AltName: Full=NADH dehydrogenase I subunit I 2; AltName: Full=NDH-1 subunit I 2 gi|85775509|gb|ABC82346.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 264 Score = 84.8 bits (208), Expect = 3e-15, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 46/124 (37%), Gaps = 1/124 (0%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 K F + L Y + TT+ YP C C+ CE C Sbjct: 17 KSFWHGLSITLSYLARRPTTVQYPDRTPMPVRDMLPPRYRGFLEVDSGICTGCQACERAC 76 Query: 74 PAQAITIESGPRC-HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 P I I + R ++DID KC++CGLC E CP +I FE + + Sbjct: 77 PIGCIQISLEKDAANPKQRVVTQFDIDEAKCMFCGLCVEPCPTGSIQHTREFEGTHKHIR 136 Query: 133 ELYY 136 L + Sbjct: 137 NLVF 140 >gi|307299701|ref|ZP_07579495.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Thermotogales bacterium mesG1.Ag.4.2] gi|306914628|gb|EFN45020.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Thermotogales bacterium mesG1.Ag.4.2] Length = 609 Score = 84.8 bits (208), Expect = 3e-15, Method: Composition-based stats. Identities = 27/140 (19%), Positives = 50/140 (35%), Gaps = 11/140 (7%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M ++ + + F TI P + R+RG H N Sbjct: 1 MSVYDDFKKTF------WGPTVAWKRLFTKPVTIKVPQVYREAAERYRGFHV-----NDW 49 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++C C C ICP AI + D ++ R ID +C +CG+C + C ++ Sbjct: 50 DKCSGCGTCAKICPTDAIKMVPVDITVDIGKKAQRPAIDYGRCSFCGMCVDICTTGSLNM 109 Query: 121 GPNFEFATETRQELYYDKER 140 + ++ ++ + Sbjct: 110 TREYIHISDDPDSFFFLPDE 129 >gi|212550778|ref|YP_002309095.1| NADH dehydrogenase I subunit I [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549016|dbj|BAG83684.1| NADH dehydrogenase I subunit I [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 152 Score = 84.8 bits (208), Expect = 3e-15, Method: Composition-based stats. Identities = 37/146 (25%), Positives = 64/146 (43%), Gaps = 8/146 (5%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPN 58 M + + + V ++ + F + K T YP ++ R RG+ + Sbjct: 1 MNQIKNIIKGI--WHLVQGMYITMLNFLRKKVTEQYPEDRAKVFRYERMRGQLVMSHNEK 58 Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR----YDIDMIKCIYCGLCQEACP 114 + +C C +C+A CP I I + + T + + Y D+ C +C +C +CP Sbjct: 59 NQHKCTVCGICQANCPNGTIRIITKKELDEVTEKEKKTLDKYIYDIGSCTFCSICTISCP 118 Query: 115 VDAIVEGPNFEFATETRQELYYDKER 140 +AI+ NFE AT TR +LY + Sbjct: 119 QNAILWTTNFEHATFTRSKLYMKLNK 144 >gi|238788859|ref|ZP_04632650.1| Hydrogenase-4 component H [Yersinia frederiksenii ATCC 33641] gi|238723164|gb|EEQ14813.1| Hydrogenase-4 component H [Yersinia frederiksenii ATCC 33641] Length = 198 Score = 84.8 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 41/145 (28%), Positives = 61/145 (42%), Gaps = 13/145 (8%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F L+ TT+ YPF+ S FRG+ E+CIAC C CPA Sbjct: 1 MFKLFKTILKV---GDTTVKYPFKPLEVSSGFRGKP-----QYDAEQCIACGACTMACPA 52 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A+T+E+ ++ + + +CI+CG C+E CP AIV FE A + +LY Sbjct: 53 NALTMETDIVNGT-----RQWQLFLGRCIFCGRCEEVCPTRAIVLSQEFELAVFNKADLY 107 Query: 136 YDKERLLNNGDRWESEIVRNIVTDS 160 L + + + D Sbjct: 108 QRASFTLAHCRQCQEPFAPQKEVDY 132 >gi|294630837|ref|ZP_06709397.1| NADH-quinone oxidoreductase subunit I 2 [Streptomyces sp. e14] gi|292834170|gb|EFF92519.1| NADH-quinone oxidoreductase subunit I 2 [Streptomyces sp. e14] Length = 226 Score = 84.8 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 38/126 (30%), Positives = 53/126 (42%), Gaps = 14/126 (11%) Query: 27 FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC 86 + T YP + PR RG L EE C C LC CP I I+S Sbjct: 1 MTRKTVTEQYPDTQPDLPPRTRGVIGLF-----EENCTVCMLCARECPDWCIYIDSHKET 55 Query: 87 ---------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 R+ ID C+YCG+C E CP DA+ P FE+A ++L ++ Sbjct: 56 VPAATPGGRERSRNVLDRFAIDFSLCMYCGICIEVCPFDALFWSPEFEYAETDIRDLTHE 115 Query: 138 KERLLN 143 +++L Sbjct: 116 RDKLRE 121 >gi|14591236|ref|NP_143313.1| NADH dehydrogenase subunit I [Pyrococcus horikoshii OT3] gi|3257870|dbj|BAA30553.1| 206aa long hypothetical NADH-plastoquinone oxidoreductase subunit [Pyrococcus horikoshii OT3] Length = 206 Score = 84.8 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 6/113 (5%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80 +L L+Y FK TI P EK +P++RG H L ++CI C C ICPA+AI + Sbjct: 24 WLGLKYLFKKPVTIKIPDEKIEPAPKYRGFHTL-----DWKKCIGCNFCGQICPARAIEM 78 Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 +R ID +C +C C + CP A+ ++ T ++E Sbjct: 79 TWIEVNGKLEKRP-HPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGKEE 130 >gi|223936525|ref|ZP_03628436.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [bacterium Ellin514] gi|223894689|gb|EEF61139.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [bacterium Ellin514] Length = 209 Score = 84.8 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 38/146 (26%), Positives = 57/146 (39%), Gaps = 15/146 (10%) Query: 11 LFLKEFVGAFFLCLRYFFK------AKTTINYPFEKGSTSPRFRGEHALRRYPNGE---E 61 + + + R F T+ YP ++ R L Sbjct: 1 MLGEGIIKGMVETARNFVGSYHDPERLVTVEYPEQRVPPKENARNFPFLVYDGEDPMKGL 60 Query: 62 RCIACKLCEAICPAQAITIESG-----PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 RC+AC++CE CP + I I + +DID+ C+ C +C E CP + Sbjct: 61 RCVACQICEKECPPKCIYIIKDSVKKPDYMGKMQIQPKVFDIDVSVCMSCQICVEVCPFE 120 Query: 117 AIVEGPNFEFATETR-QELYYDKERL 141 AI FE ATE R Q L +K++L Sbjct: 121 AIKMDTKFELATEDRFQGLLLNKQQL 146 >gi|302348178|ref|YP_003815816.1| NADH-quinone oxidoreductase subunit I [Acidilobus saccharovorans 345-15] gi|302328590|gb|ADL18785.1| NADH-quinone oxidoreductase subunit I [Acidilobus saccharovorans 345-15] Length = 196 Score = 84.8 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 9/128 (7%) Query: 17 VGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +GA + ++YF + T+ YP E +RG L +CI+C C ICPA Sbjct: 24 LGALIVGVKYFIDPNRITLLYPHEYIKLRQGYRGYIVLIFD-----KCISCASCARICPA 78 Query: 76 QAITIESGPRCHDG---TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 +A+ + + + I+ +CI+CG C + CP +A+ P + Q Sbjct: 79 RAMKMVTMEVKDKKLNRAMKKKYPVINYNRCIFCGYCVDVCPTEALYHVPYHDLVYLNMQ 138 Query: 133 ELYYDKER 140 ++ + E Sbjct: 139 DMILNVEE 146 >gi|227828038|ref|YP_002829818.1| NADH dehydrogenase subunit I [Sulfolobus islandicus M.14.25] gi|227830775|ref|YP_002832555.1| NADH dehydrogenase subunit I [Sulfolobus islandicus L.S.2.15] gi|229579671|ref|YP_002838070.1| NADH dehydrogenase subunit I [Sulfolobus islandicus Y.G.57.14] gi|229581663|ref|YP_002840062.1| NADH dehydrogenase subunit I [Sulfolobus islandicus Y.N.15.51] gi|229585307|ref|YP_002843809.1| NADH dehydrogenase subunit I [Sulfolobus islandicus M.16.27] gi|238620268|ref|YP_002915094.1| NADH dehydrogenase subunit I [Sulfolobus islandicus M.16.4] gi|284998289|ref|YP_003420057.1| NADH-quinone oxidoreductase, chain I [Sulfolobus islandicus L.D.8.5] gi|227457223|gb|ACP35910.1| NADH-quinone oxidoreductase, chain I [Sulfolobus islandicus L.S.2.15] gi|227459834|gb|ACP38520.1| NADH-quinone oxidoreductase, chain I [Sulfolobus islandicus M.14.25] gi|228010386|gb|ACP46148.1| NADH-quinone oxidoreductase, chain I [Sulfolobus islandicus Y.G.57.14] gi|228012379|gb|ACP48140.1| NADH-quinone oxidoreductase, chain I [Sulfolobus islandicus Y.N.15.51] gi|228020357|gb|ACP55764.1| NADH-quinone oxidoreductase, chain I [Sulfolobus islandicus M.16.27] gi|238381338|gb|ACR42426.1| NADH-quinone oxidoreductase, chain I [Sulfolobus islandicus M.16.4] gi|284446185|gb|ADB87687.1| NADH-quinone oxidoreductase, chain I [Sulfolobus islandicus L.D.8.5] Length = 167 Score = 84.8 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 39/137 (28%), Positives = 66/137 (48%), Gaps = 14/137 (10%) Query: 5 RCNVSFLFLKEFVGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + N++ LF E + + ++YF K + T+ YP + S +RG L + C Sbjct: 9 KENIASLF-AEHIQSIVTGIKYFVKPQRITLQYPEDSLSLPTGYRGMIRLYKD-----VC 62 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 I C LC ICPA A+ + + I+ +C++CG C + CPVDA+ E Sbjct: 63 IGCTLCALICPADAMKMVT-------QSGKKFPQINYGRCVFCGFCVDVCPVDALKETKV 115 Query: 124 FEFATETRQELYYDKER 140 + +R++L +D +R Sbjct: 116 HDLVFNSRKQLIFDPDR 132 >gi|73748696|ref|YP_307935.1| proton-translocating NADH-quinone oxidoreductase, I subunit [Dehalococcoides sp. CBDB1] gi|73660412|emb|CAI83019.1| proton-translocating NADH-quinone oxidoreductase, I subunit [Dehalococcoides sp. CBDB1] Length = 169 Score = 84.8 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 40/111 (36%), Positives = 54/111 (48%), Gaps = 6/111 (5%) Query: 20 FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79 L ++ F+ T+ YP EK + S R RG + +E CIAC C CP +AI Sbjct: 1 MRLTFKHLFRPWITVQYPEEKLAMSKRIRGNQVIWV----KETCIACLACARACPVKAIN 56 Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DAIVEGPNFEFATE 129 +E R D + ID CI+CGLC E+CP +AI G +E T Sbjct: 57 MEVS-RGEDRKLKVDHMSIDFGLCIFCGLCVESCPTKNAIYMGCGYETTTY 106 >gi|330448644|ref|ZP_08312292.1| 4Fe-4S binding domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328492835|dbj|GAA06789.1| 4Fe-4S binding domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 182 Score = 84.4 bits (207), Expect = 4e-15, Method: Composition-based stats. Identities = 40/145 (27%), Positives = 62/145 (42%), Gaps = 13/145 (8%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 L+ + T YPF S FRG+ L ++C++C C CPA Sbjct: 1 MFKLLKTVLKT---GEVTTKYPFAPLEVSEDFRGKPEL-----DADQCLSCGACMRACPA 52 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A+ +E+ + R+++ M +CIYCG C+E CP AI NFE A +++LY Sbjct: 53 NALVMETDEKAGT-----RRWELSMARCIYCGRCEEVCPTKAIKLSQNFELAVTRKEDLY 107 Query: 136 YDKERLLNNGDRWESEIVRNIVTDS 160 L N + V + + Sbjct: 108 EHAVFQLANCRQCGRPFVAKKLLEY 132 >gi|20090359|ref|NP_616434.1| F(420)H(2) dehydrogenase, subunit FpoI [Methanosarcina acetivorans C2A] gi|19915364|gb|AAM04914.1| F(420)H(2) dehydrogenase, subunit FpoI [Methanosarcina acetivorans C2A] Length = 136 Score = 84.4 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 33/128 (25%), Positives = 54/128 (42%), Gaps = 7/128 (5%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + ++ K + T P + S RFRG L + +CI C +C CP Sbjct: 2 VLKNIKYAVKNIPKKRVTRLCPEVESPLSDRFRGLQIL-----DKSKCIGCGICANTCPN 56 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE--FATETRQE 133 AI I P +++ +ID+ C++CGLC + CP A+ G + ++ Sbjct: 57 NAIKIVKAPIAPGSSKQRWFPEIDIGHCLFCGLCIDQCPKGALSSGKEYTKGMVKWAHKD 116 Query: 134 LYYDKERL 141 L E+L Sbjct: 117 LLMTPEKL 124 >gi|270294465|ref|ZP_06200667.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270275932|gb|EFA21792.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 167 Score = 84.4 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 40/144 (27%), Positives = 61/144 (42%), Gaps = 7/144 (4%) Query: 1 MRIFRCNVSFLF--LKEFVGAFFLCLRYFFKAKTTINYPFEK--GSTSPRFRGEHALRRY 56 M+ + L + + + F + KTT YP + S RFRG + Sbjct: 1 MKEKNSYIGGLIHGVTSLLTGMKTTMTVFCRRKTTEQYPENRSTLKLSDRFRGTLTMPHN 60 Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV---RYDIDMIKCIYCGLCQEAC 113 E RC+AC LC+ CP I + + ++ +Y+ D+ C++C LC AC Sbjct: 61 DKNEHRCVACGLCQMACPNDTIKVTGEMVETEDGKKKKILVKYEYDLGSCMFCQLCVNAC 120 Query: 114 PVDAIVEGPNFEFATETRQELYYD 137 P DAI +FE A R +L Sbjct: 121 PHDAITFDQDFEHAVFDRTKLVMT 144 >gi|160891174|ref|ZP_02072177.1| hypothetical protein BACUNI_03621 [Bacteroides uniformis ATCC 8492] gi|317481070|ref|ZP_07940149.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 4_1_36] gi|156859395|gb|EDO52826.1| hypothetical protein BACUNI_03621 [Bacteroides uniformis ATCC 8492] gi|316902783|gb|EFV24658.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 4_1_36] Length = 167 Score = 84.4 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 40/144 (27%), Positives = 61/144 (42%), Gaps = 7/144 (4%) Query: 1 MRIFRCNVSFLF--LKEFVGAFFLCLRYFFKAKTTINYPFEK--GSTSPRFRGEHALRRY 56 M+ + L + + + F + KTT YP + S RFRG + Sbjct: 1 MKEKNSYIGGLIHGVTSLLTGMKTTMTVFCRRKTTEQYPENRSTLKLSDRFRGTLTMPHN 60 Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV---RYDIDMIKCIYCGLCQEAC 113 E RC+AC LC+ CP I + + ++ +Y+ D+ C++C LC AC Sbjct: 61 DKNEHRCVACGLCQMACPNDTIKVTGEMVETEDGKKKKILVKYEYDLGSCMFCQLCVNAC 120 Query: 114 PVDAIVEGPNFEFATETRQELYYD 137 P DAI +FE A R +L Sbjct: 121 PHDAITFDQDFEHAVFDRTKLVMT 144 >gi|150021107|ref|YP_001306461.1| putative oxidoreductase [Thermosipho melanesiensis BI429] gi|149793628|gb|ABR31076.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosipho melanesiensis BI429] Length = 616 Score = 84.4 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 44/115 (38%), Gaps = 6/115 (5%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 ++ K TI P+ K + R+RG H N CI C C ICP AI + Sbjct: 17 AWKFLLKKPVTIKVPYVKREAAERYRGFHI-----NDWNECIGCGTCSKICPTDAIKMVE 71 Query: 83 GPRCHDGT-RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 + R ID +C +C +C + C ++ + + ++ + Sbjct: 72 IEDLPQQYGEKPQRPVIDYGRCSFCAMCVDICTTGSLKMTREYVHISPNPEDFIF 126 >gi|238761068|ref|ZP_04622045.1| Hydrogenase-4 component H [Yersinia kristensenii ATCC 33638] gi|238761321|ref|ZP_04622297.1| Hydrogenase-4 component H [Yersinia kristensenii ATCC 33638] gi|238700295|gb|EEP93036.1| Hydrogenase-4 component H [Yersinia kristensenii ATCC 33638] gi|238700548|gb|EEP93288.1| Hydrogenase-4 component H [Yersinia kristensenii ATCC 33638] Length = 184 Score = 84.4 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 42/142 (29%), Positives = 63/142 (44%), Gaps = 11/142 (7%) Query: 20 FFLCLRYFFK-AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78 F + K TT+ YPF+ S FRG+ E+CIAC C CPA A+ Sbjct: 1 MFKLFKTLLKVGDTTVKYPFKPLEVSHGFRGKP-----QYDAEQCIACGACTMACPANAL 55 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 T+E+ + T ++ + + +CI+CG C+E CP AIV FE A + +LY Sbjct: 56 TMETDI-----IKGTRQWQLFLGRCIFCGRCEEVCPTRAIVLSQEFELAVFNKADLYQRA 110 Query: 139 ERLLNNGDRWESEIVRNIVTDS 160 L + + + D Sbjct: 111 SFTLAHCQQCQKPFAPKKEVDY 132 >gi|65317271|ref|ZP_00390230.1| COG1143: Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Bacillus anthracis str. A2012] Length = 120 Score = 84.4 bits (207), Expect = 5e-15, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 52/121 (42%), Gaps = 7/121 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD--GT 90 T +YP + RFRG E+CI C C ICP I + Sbjct: 2 TYDYPNQPLPLPDRFRGIQKFY-----PEKCIVCNQCSNICPTDCIQLTGKKHPDPTKKG 56 Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWES 150 + YDI+ CI C LC E CP +AIV NFE A +R +L+ + + L N + Sbjct: 57 KIIDTYDINFEICILCDLCTEVCPTEAIVMTNNFELAEYSRDDLFKNLQWLDENDENVRK 116 Query: 151 E 151 E Sbjct: 117 E 117 >gi|323475129|gb|ADX85735.1| NADH-quinone oxidoreductase, chain I [Sulfolobus islandicus REY15A] gi|323477861|gb|ADX83099.1| NADH-quinone oxidoreductase, chain I [Sulfolobus islandicus HVE10/4] Length = 167 Score = 84.0 bits (206), Expect = 6e-15, Method: Composition-based stats. Identities = 38/137 (27%), Positives = 65/137 (47%), Gaps = 14/137 (10%) Query: 5 RCNVSFLFLKEFVGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + N++ LF E + + ++Y K + T+ YP + S +RG L + C Sbjct: 9 KENIASLF-AEHIQSIVTGIKYLVKPQRITLQYPEDSLSLPTGYRGMIRLYKD-----VC 62 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 I C LC ICPA A+ + + I+ +C++CG C + CPVDA+ E Sbjct: 63 IGCTLCALICPADAMKMVT-------QSGKKFPQINYGRCVFCGFCVDVCPVDALKETKV 115 Query: 124 FEFATETRQELYYDKER 140 + +R++L +D +R Sbjct: 116 HDLVFNSRKQLIFDPDR 132 >gi|330834249|ref|YP_004408977.1| NADH dehydrogenase subunit I [Metallosphaera cuprina Ar-4] gi|329566388|gb|AEB94493.1| NADH dehydrogenase subunit I [Metallosphaera cuprina Ar-4] Length = 169 Score = 84.0 bits (206), Expect = 6e-15, Method: Composition-based stats. Identities = 37/132 (28%), Positives = 60/132 (45%), Gaps = 13/132 (9%) Query: 17 VGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 V A L+YF K K T+ YP E + +RG L + CI C LC +CPA Sbjct: 23 VQAVGAGLKYFVKPQKITLKYPEESMTLPSGYRGMIRLYKD-----VCIGCTLCAMVCPA 77 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A+ + + + I+ +C++C C + CPVDA+ E + R+EL Sbjct: 78 DAMKMVTEQGKKLPS-------INYGRCVFCAFCVDICPVDALKETGVHDATFSNRRELI 130 Query: 136 YDKERLLNNGDR 147 + ++ + D+ Sbjct: 131 FTPDKFDQDFDQ 142 >gi|70608047|ref|YP_256917.1| NADH dehydrogenase subunit I [Sulfolobus acidocaldarius DSM 639] gi|68568695|gb|AAY81624.1| NADH-quinone oxidoreductase [Sulfolobus acidocaldarius DSM 639] Length = 165 Score = 84.0 bits (206), Expect = 6e-15, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 58/136 (42%), Gaps = 13/136 (9%) Query: 13 LKEFVGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71 + + A L+Y + + T+ YP E S +RG L + CI C LC Sbjct: 16 FVDHLQAVGTGLKYAVRPQRITLKYPEEAISLPTGYRGMIRLYKD-----ICIGCTLCAL 70 Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 ICPA A+ + + I+ +C++CG C + CPVDA+ E + R Sbjct: 71 ICPADAMKMTTEA-------GKKLPVINYGRCVFCGFCVDVCPVDALRETRVHDTIFTNR 123 Query: 132 QELYYDKERLLNNGDR 147 ++L + ++ D Sbjct: 124 RDLVFRPDKFDQAYDE 139 >gi|260171806|ref|ZP_05758218.1| NADH dehydrogenase I, chain I [Bacteroides sp. D2] gi|315920118|ref|ZP_07916358.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313693993|gb|EFS30828.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 162 Score = 84.0 bits (206), Expect = 6e-15, Method: Composition-based stats. Identities = 40/129 (31%), Positives = 57/129 (44%), Gaps = 5/129 (3%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGS--TSPRFRGEHALRRYPNGEERCIACKLCE 70 + ++ +F+ K T YP + RFRG + N E RCIAC LC+ Sbjct: 18 ISTLATGMKTSIKVYFRKKVTEQYPENRKELKMFDRFRGTLNMPHNENNEHRCIACGLCQ 77 Query: 71 AICPAQAITIESGPRCHDGTRRTVR---YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CP I + S + ++ Y+ D+ C++C LC ACP DAI NFE A Sbjct: 78 TACPNDTIKVISETVETEDGKKKKILATYEYDLGACMFCQLCVNACPHDAITFDQNFEHA 137 Query: 128 TETRQELYY 136 R +L Sbjct: 138 VFDRTKLVL 146 >gi|313202846|ref|YP_004041503.1| NADH dehydrogenase i subunit i [Paludibacter propionicigenes WB4] gi|312442162|gb|ADQ78518.1| putative NADH dehydrogenase I subunit I [Paludibacter propionicigenes WB4] Length = 166 Score = 84.0 bits (206), Expect = 6e-15, Method: Composition-based stats. Identities = 39/141 (27%), Positives = 55/141 (39%), Gaps = 7/141 (4%) Query: 1 MRIFRCNVSFLF--LKEFVGAFFLCLRYFFKAKTTINYPFEKGS--TSPRFRGEHALRRY 56 M+ S LF +K + + + K T YP + + S RFR E + Sbjct: 1 MKSILKYFSGLFTGIKSLLTGMGETWKELWTKKVTQQYPENRDTLVISDRFRAELTMPHD 60 Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK---CIYCGLCQEAC 113 N E C AC +C+ CP I + + ++ D C +C LC C Sbjct: 61 ENNEHACTACGICQMNCPNGTIKVNPKMIETEDGKKKKILDTYQWDLGMCTFCNLCVITC 120 Query: 114 PVDAIVEGPNFEFATETRQEL 134 P DAI FE A TR +L Sbjct: 121 PSDAIKFENTFENAVFTRGKL 141 >gi|312183559|gb|ADQ42349.1| NADH:ubiquinone oxidoreductase I [Methanosaeta harundinacea] Length = 185 Score = 84.0 bits (206), Expect = 7e-15, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 7/127 (5%) Query: 16 FVGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP 74 + + + + T YP + RG H L +CI C C ICP Sbjct: 2 VLKNLKMTFKRATSGVEVTRLYPEKIMDLPDAERGVHVL-----EIRKCIGCGACARICP 56 Query: 75 AQAITIESGPRCHDGTRRTVRY-DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 I + + R + + ++Y ID +C++CGLC + CP ++ FE + R++ Sbjct: 57 NDCIKLVAYSRGNPVKNKKLQYPQIDYGRCMFCGLCVDDCPASCLIMSKQFEISGWNRED 116 Query: 134 LYYDKER 140 + YD E Sbjct: 117 IIYDPED 123 >gi|124004525|ref|ZP_01689370.1| NADH dehydrogenase i, 23 kda subunit [Microscilla marina ATCC 23134] gi|123990097|gb|EAY29611.1| NADH dehydrogenase i, 23 kda subunit [Microscilla marina ATCC 23134] Length = 488 Score = 84.0 bits (206), Expect = 7e-15, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 58/186 (31%), Gaps = 47/186 (25%) Query: 17 VGAFFLCLRYFF-----KAK----------------TTINYPFEKGSTSPRFRGEHALRR 55 + L +++ F + T YP+E R R Sbjct: 22 LIGLKLSIKHAFEARQRRKPADSIATPAYFEQQTGRVTTQYPYEAIPVPDNGR-----YR 76 Query: 56 YPNGEERCIACKLCEAICPAQAITIES---------GPRCHDGTRRTVRYDIDMIKCIYC 106 N + CI C C ICP I IE +DIDM KC YC Sbjct: 77 LFNEMDDCIVCDKCAKICPVDCIDIEPIRATGQIGTASDGSPIRLYAATFDIDMAKCCYC 136 Query: 107 GLCQEACPVDAIVEGPNFEFATETRQELYYD-----------KERLLNNGDRWESEIVRN 155 GLC CP + + ++++ ++ Y K+ L + E E + Sbjct: 137 GLCTTVCPTECLTMTKAYDYSEVDITDMIYHFSNLTPDQVQEKKDLFEQYMK-EKEATKK 195 Query: 156 IVTDSP 161 + + Sbjct: 196 QMAQAK 201 >gi|238784033|ref|ZP_04628048.1| Hydrogenase-4 component H [Yersinia bercovieri ATCC 43970] gi|238715010|gb|EEQ07007.1| Hydrogenase-4 component H [Yersinia bercovieri ATCC 43970] Length = 208 Score = 83.6 bits (205), Expect = 7e-15, Method: Composition-based stats. Identities = 43/145 (29%), Positives = 64/145 (44%), Gaps = 13/145 (8%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + F L+ TT+ YPF+ S FRG+ +CIAC C CPA Sbjct: 1 MLKLFKTILKV---GDTTVKYPFKPLEVSHGFRGKP-----QYEAAQCIACGACTMACPA 52 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A+T+E+ R T ++ + + +CI+CG C+E CP AIV P FE A + +LY Sbjct: 53 NALTMETDIA-----RGTRQWQLFLGRCIFCGRCEEVCPTRAIVLSPEFELAVFNKADLY 107 Query: 136 YDKERLLNNGDRWESEIVRNIVTDS 160 L + + + D Sbjct: 108 QRATFTLTSCQQCQRPFAPKKEVDY 132 >gi|283780218|ref|YP_003370973.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Pirellula staleyi DSM 6068] gi|283438671|gb|ADB17113.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pirellula staleyi DSM 6068] Length = 175 Score = 83.6 bits (205), Expect = 7e-15, Method: Composition-based stats. Identities = 40/149 (26%), Positives = 58/149 (38%), Gaps = 14/149 (9%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFF------KAKTTIN--YPFEKGSTSPRFRGEHA 52 M + N+ +L + ++ LRY+ + T YP + + R+RG H Sbjct: 1 MWDWLRNI-YLAVYTVGHGMYVTLRYWLITYQPERGTFTERFEYPEKPVPVAARYRGFHR 59 Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 CIAC C CP I I + + ID KC++C LC E Sbjct: 60 -----YDLTTCIACDQCAKACPVDCIYIGKERVEGSKGFKITGFAIDYSKCMFCALCVEP 114 Query: 113 CPVDAIVEGPNFEFATETRQELYYDKERL 141 CPVD I G + + +R D RL Sbjct: 115 CPVDCIFMGATHDLSCYSRDGCIVDFSRL 143 >gi|317050799|ref|YP_004111915.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein [Desulfurispirillum indicum S5] gi|316945883|gb|ADU65359.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfurispirillum indicum S5] Length = 176 Score = 83.6 bits (205), Expect = 8e-15, Method: Composition-based stats. Identities = 40/145 (27%), Positives = 59/145 (40%), Gaps = 11/145 (7%) Query: 19 AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78 L+Y + T YP R RG EE+CIAC +C CP I Sbjct: 35 GMKTVLKYAGGPRPTREYPEVVRPLPERSRGRLYFI-----EEKCIACNMCVKACPIDVI 89 Query: 79 --TIESGPRCHDGTRRTV----RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 R DG + V +Y +D+ +CI CGLC E CP DA+ + +E A ++ Sbjct: 90 QLEFHREDREVDGKVKKVPVIDKYTVDIGECISCGLCAEHCPTDAVFQSQEYETAYYYKE 149 Query: 133 ELYYDKERLLNNGDRWESEIVRNIV 157 +K+ L + + R + Sbjct: 150 LFVMNKDELAMTFPEYIEKKSRELK 174 >gi|119719990|ref|YP_920485.1| NADH dehydrogenase subunit I [Thermofilum pendens Hrk 5] gi|119525110|gb|ABL78482.1| NADH-quinone oxidoreductase, chain I [Thermofilum pendens Hrk 5] Length = 156 Score = 83.6 bits (205), Expect = 8e-15, Method: Composition-based stats. Identities = 37/126 (29%), Positives = 55/126 (43%), Gaps = 11/126 (8%) Query: 17 VGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 V A L+Y K + T+ YP +RG E+CI C LC ICPA Sbjct: 12 VRAVLTGLKYLVKPNRITVYYPEYYVEPPEGYRGMIKYY-----PEKCIQCGLCAMICPA 66 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A+ + G R ++ +CI+CG C + CP DA+ + A + +EL Sbjct: 67 GAMKMYVKKGEKKG-----RPGVNYQRCIFCGFCVDICPQDALEMTKVHDVAFSSLEELV 121 Query: 136 YDKERL 141 + E+L Sbjct: 122 FPPEKL 127 >gi|82544937|ref|YP_408884.1| hydrogenase 4 subunit H [Shigella boydii Sb227] gi|81246348|gb|ABB67056.1| hydrogenase 4 Fe-S subunit [Shigella boydii Sb227] gi|320176267|gb|EFW51328.1| Hydrogenase-4 component H [Shigella dysenteriae CDC 74-1112] gi|320185185|gb|EFW59965.1| Hydrogenase-4 component H [Shigella flexneri CDC 796-83] gi|332092788|gb|EGI97857.1| hydrogenase-4 component H [Shigella boydii 3594-74] Length = 179 Score = 83.6 bits (205), Expect = 9e-15, Method: Composition-based stats. Identities = 41/138 (29%), Positives = 58/138 (42%), Gaps = 15/138 (10%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + +R T+ YPF SP FRG+ L +CIAC C CPA Sbjct: 1 MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLM-----PSQCIACGACA--CPA 50 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A+TI++ + + + + + +CIYCG C+E CP AI NFE + +LY Sbjct: 51 NALTIQTDDQQNS-----RTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 105 Query: 136 YDKERLLNNGDRWESEIV 153 L R E Sbjct: 106 TRATFHLQRCSRCERPFA 123 >gi|14520923|ref|NP_126398.1| NADH dehydrogenase subunit I [Pyrococcus abyssi GE5] gi|5458140|emb|CAB49629.1| nuoI NADH dehydrogenase I, subunit I [Pyrococcus abyssi GE5] Length = 214 Score = 83.6 bits (205), Expect = 9e-15, Method: Composition-based stats. Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 6/113 (5%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80 +L L+Y FK TI P+EK +P++RG H L ++CI C C ICPA+AI + Sbjct: 24 WLGLKYLFKKPVTIKIPYEKIDPAPKYRGFHTL-----DWKKCIGCNFCGQICPARAIEM 78 Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 +R ID +C +C C + CP A+ ++ T +E Sbjct: 79 TWIEVDGKMEKRP-HPKIDYGRCTFCQFCVDVCPTGALGFIESYILTTTGDEE 130 >gi|193068443|ref|ZP_03049406.1| iron-sulfur cluster-binding protein [Escherichia coli E110019] gi|192958395|gb|EDV88835.1| iron-sulfur cluster-binding protein [Escherichia coli E110019] Length = 179 Score = 83.6 bits (205), Expect = 9e-15, Method: Composition-based stats. Identities = 41/141 (29%), Positives = 59/141 (41%), Gaps = 15/141 (10%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + +R T+ YPF SP FRG+ L +CIAC C CPA Sbjct: 1 MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLM-----PSQCIACGACA--CPA 50 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A+TI++ + + + + + +CIYCG C+E CP AI NFE + +LY Sbjct: 51 NALTIQTDDQQNS-----RTWQLYLRRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 105 Query: 136 YDKERLLNNGDRWESEIVRNI 156 L R E + Sbjct: 106 TRATFHLQRCSRCERPFAQQK 126 >gi|260768584|ref|ZP_05877518.1| formate hydrogenlyase complex 3 iron-sulfur protein [Vibrio furnissii CIP 102972] gi|260616614|gb|EEX41799.1| formate hydrogenlyase complex 3 iron-sulfur protein [Vibrio furnissii CIP 102972] gi|315180293|gb|ADT87207.1| hydrogenase 4 Fe-S subunit [Vibrio furnissii NCTC 11218] Length = 192 Score = 83.6 bits (205), Expect = 9e-15, Method: Composition-based stats. Identities = 39/145 (26%), Positives = 61/145 (42%), Gaps = 13/145 (8%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + L+ T YPF + FRG+ L +CI+C C CPA Sbjct: 1 MIKLLKTILKT---GDVTAKYPFAPFEVAEDFRGKPEL-----NASQCISCGACTRACPA 52 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A+ +E+ + R+++ + +CIYCG C+E CP AI FE A +++LY Sbjct: 53 NALIMETDEQNGT-----RRWELSLARCIYCGRCEEVCPTHAIELSKAFELAVTKKEDLY 107 Query: 136 YDKERLLNNGDRWESEIVRNIVTDS 160 E L N + V + + Sbjct: 108 ESAEFELANCTCCQRPFVAKKLLNY 132 >gi|157161948|ref|YP_001459266.1| hydrogenase 4 subunit H [Escherichia coli HS] gi|170019228|ref|YP_001724182.1| hydrogenase 4 subunit H [Escherichia coli ATCC 8739] gi|194437671|ref|ZP_03069767.1| iron-sulfur cluster-binding protein [Escherichia coli 101-1] gi|253772620|ref|YP_003035451.1| hydrogenase 4 subunit H [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162462|ref|YP_003045570.1| hydrogenase 4 subunit H [Escherichia coli B str. REL606] gi|297519670|ref|ZP_06938056.1| hydrogenase 4 subunit H [Escherichia coli OP50] gi|300930125|ref|ZP_07145547.1| hydrogenase 4 subunit H [Escherichia coli MS 187-1] gi|157067628|gb|ABV06883.1| iron-sulfur cluster-binding protein [Escherichia coli HS] gi|169754156|gb|ACA76855.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia coli ATCC 8739] gi|194423477|gb|EDX39468.1| iron-sulfur cluster-binding protein [Escherichia coli 101-1] gi|242378086|emb|CAQ32859.1| hydrogenase 4, component H, subunit of hydrogenase 4 [Escherichia coli BL21(DE3)] gi|253323664|gb|ACT28266.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974363|gb|ACT40034.1| hydrogenase 4, Fe-S subunit [Escherichia coli B str. REL606] gi|253978530|gb|ACT44200.1| hydrogenase 4, Fe-S subunit [Escherichia coli BL21(DE3)] gi|300461969|gb|EFK25462.1| hydrogenase 4 subunit H [Escherichia coli MS 187-1] gi|323961282|gb|EGB56894.1| 4Fe-4S binding domain-containing protein [Escherichia coli H489] gi|323970990|gb|EGB66239.1| 4Fe-4S binding domain-containing protein [Escherichia coli TA007] Length = 179 Score = 83.6 bits (205), Expect = 9e-15, Method: Composition-based stats. Identities = 41/141 (29%), Positives = 59/141 (41%), Gaps = 15/141 (10%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + +R T+ YPF SP FRG+ L +CIAC C CPA Sbjct: 1 MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLM-----PSQCIACGACA--CPA 50 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A+TI++ + + + + + +CIYCG C+E CP AI NFE + +LY Sbjct: 51 NALTIQTDDQQNS-----RTWQLYLRRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 105 Query: 136 YDKERLLNNGDRWESEIVRNI 156 L R E + Sbjct: 106 TRATFHLQRCSRCERPFAQQK 126 >gi|301167763|emb|CBW27347.1| putative NADH dehydrogenase I subunit I [Bacteriovorax marinus SJ] Length = 174 Score = 83.2 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 40/149 (26%), Positives = 55/149 (36%), Gaps = 19/149 (12%) Query: 18 GAFFLCLRYFFK-AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + L+Y + TI YP + R N E CI+C C CP Sbjct: 33 KGMGITLKYVYGVKPVTIEYPEVREILPENSRSRL-----FNDAENCISCYQCAVACPVD 87 Query: 77 AITIESGPRCHDGTRRTV-----------RYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 I I + R D + +Y ID C YCGLC CP + + ++E Sbjct: 88 CIYITATKRDKDAPKLKASNGNPIRLDLHQYTIDTALCCYCGLCTTVCPTECLTHTTDYE 147 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVR 154 FA T + YD L + W IV+ Sbjct: 148 FAQYTLDSMKYDY--LAPDIRAWRDRIVK 174 >gi|317493923|ref|ZP_07952340.1| 4Fe-4S binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] gi|316918250|gb|EFV39592.1| 4Fe-4S binding domain-containing protein [Enterobacteriaceae bacterium 9_2_54FAA] Length = 185 Score = 83.2 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 38/145 (26%), Positives = 59/145 (40%), Gaps = 13/145 (8%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + ++ T+ YP + P FRG+ E+CIAC C A CPA Sbjct: 1 MLKLLKTAFKH---RDATVAYPAKPMQVDPNFRGKPE-----YNPEQCIACGACTAACPA 52 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A+T+E+ R + + + +CI+C C+E CP AI P FE A + +L+ Sbjct: 53 NALTMETNAREGT-----RTWSLHLGRCIFCARCEEVCPTAAIKLTPEFELAVWNKNDLF 107 Query: 136 YDKERLLNNGDRWESEIVRNIVTDS 160 E + N + D Sbjct: 108 QTAEFKVCNCVECGAPYAAQKEIDY 132 >gi|238757223|ref|ZP_04618410.1| Hydrogenase-4 component H [Yersinia aldovae ATCC 35236] gi|238704601|gb|EEP97131.1| Hydrogenase-4 component H [Yersinia aldovae ATCC 35236] Length = 184 Score = 83.2 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 40/142 (28%), Positives = 60/142 (42%), Gaps = 11/142 (7%) Query: 20 FFLCLRYFFK-AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78 + K TT+ YPF+ S FRG+ +CIAC C CPA A+ Sbjct: 1 MLKLFKTLLKVGDTTVKYPFKPLEVSHGFRGKP-----QYDAGQCIACGACTMACPANAL 55 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 T+E+ + T ++ + + +CI+CG C+E CP AIV FE A + +LY Sbjct: 56 TMETDLA-----KGTRQWQLFLGRCIFCGRCEEVCPTRAIVLSQEFELAVFNKADLYQRA 110 Query: 139 ERLLNNGDRWESEIVRNIVTDS 160 L + + D Sbjct: 111 TFTLAHCQQCRQPFAPKKEVDY 132 >gi|238749930|ref|ZP_04611434.1| Hydrogenase-4 component H [Yersinia rohdei ATCC 43380] gi|238711859|gb|EEQ04073.1| Hydrogenase-4 component H [Yersinia rohdei ATCC 43380] Length = 206 Score = 83.2 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 41/145 (28%), Positives = 62/145 (42%), Gaps = 13/145 (8%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + F L+ TT+ YPF+ S FRG+ E+CIAC C CPA Sbjct: 1 MLKLFKTILKV---GDTTVKYPFKPLEVSAGFRGKP-----QYDAEQCIACGACTMACPA 52 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A+T+E+ ++ + + +CI+CG C+E CP AIV FE A ++ +LY Sbjct: 53 NALTMETDIANST-----RQWQLFLGRCIFCGRCEEVCPTRAIVLSQEFELAVFSKADLY 107 Query: 136 YDKERLLNNGDRWESEIVRNIVTDS 160 L + + D Sbjct: 108 QRANFTLAHCQQCHQPFAPKKEVDY 132 >gi|300770866|ref|ZP_07080743.1| NADH dehydrogenase I [Sphingobacterium spiritivorum ATCC 33861] gi|300762139|gb|EFK58958.1| NADH dehydrogenase I [Sphingobacterium spiritivorum ATCC 33861] Length = 189 Score = 83.2 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 37/170 (21%), Positives = 60/170 (35%), Gaps = 36/170 (21%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAK--------------------TTINYPFEK 40 M + + ++ L V L +R+ F A+ T+ +P +K Sbjct: 1 MMLIKTTINALLTA--VKGLSLTVRHLFGARRARHELDITKDHYFDKQDGVATVQFPKQK 58 Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR--------- 91 R + + CI C LC CP I I + + Sbjct: 59 MPIPEVARYQLEVEIDD-----CIVCDLCAKACPVDCIDILAIKSPEAIGKTSDGSVKRL 113 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERL 141 ++DIDM KC+YCGLC CP + I ++ +T +L Y + Sbjct: 114 YAEKFDIDMAKCMYCGLCTVVCPTECITMTNQYDRSTSKLTDLIYGFSDM 163 >gi|295086641|emb|CBK68164.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Bacteroides xylanisolvens XB1A] Length = 165 Score = 83.2 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 43/149 (28%), Positives = 63/149 (42%), Gaps = 13/149 (8%) Query: 1 MRIFRCN-VSFLFLKEFV-------GAFFLCLRYFFKAKTTINYPFEKGS--TSPRFRGE 50 M+I + +L V ++ +F+ K T YP + RFRG Sbjct: 1 MKIMEYKDKKYTYLGGLVHGISTLATGMKTSIKVYFRKKVTEQYPENRKELKMFDRFRGT 60 Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---YDIDMIKCIYCG 107 + N E RC+AC LC+ CP I + S + ++ Y+ D+ C++C Sbjct: 61 LNMPHNENNEHRCVACGLCQMACPNDTIKVTSETVETEDGKKKKILATYEYDLGACMFCQ 120 Query: 108 LCQEACPVDAIVEGPNFEFATETRQELYY 136 LC ACP DAI NFE A R +L Sbjct: 121 LCVNACPHDAITFDQNFEHAVFDRTKLVL 149 >gi|300087937|ref|YP_003758459.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527670|gb|ADJ26138.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 193 Score = 83.2 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 57/119 (47%), Gaps = 6/119 (5%) Query: 12 FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71 F + + + R+ + T+ YP +K + S R RG + E CI+C+ CE Sbjct: 7 FGEGLLRGLKITARHLGRKWITVQYPEQKLTMSRRVRGTDIIW----DRESCISCRACER 62 Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DAIVEGPNFEFATE 129 CP AI +E R D +T +D+ CI+CGLC E+CP +I G N+ T Sbjct: 63 ACPVGAIKMEVS-RGEDKKLKTDDITVDLGLCIFCGLCIESCPTGVSIYIGYNYANTTY 120 >gi|237714287|ref|ZP_04544768.1| NADH dehydrogenase subunit I [Bacteroides sp. D1] gi|237719849|ref|ZP_04550330.1| NADH dehydrogenase I [Bacteroides sp. 2_2_4] gi|262408336|ref|ZP_06084883.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|293373611|ref|ZP_06619959.1| 4Fe-4S binding domain protein [Bacteroides ovatus SD CMC 3f] gi|294646450|ref|ZP_06724091.1| 4Fe-4S binding domain protein [Bacteroides ovatus SD CC 2a] gi|294809422|ref|ZP_06768127.1| 4Fe-4S binding domain protein [Bacteroides xylanisolvens SD CC 1b] gi|298480348|ref|ZP_06998546.1| NADH-ubiquinone oxidoreductase, NQO9 subunit (NQO9) [Bacteroides sp. D22] gi|229445779|gb|EEO51570.1| NADH dehydrogenase subunit I [Bacteroides sp. D1] gi|229451118|gb|EEO56909.1| NADH dehydrogenase I [Bacteroides sp. 2_2_4] gi|262353888|gb|EEZ02981.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292631436|gb|EFF50066.1| 4Fe-4S binding domain protein [Bacteroides ovatus SD CMC 3f] gi|292638221|gb|EFF56598.1| 4Fe-4S binding domain protein [Bacteroides ovatus SD CC 2a] gi|294443358|gb|EFG12120.1| 4Fe-4S binding domain protein [Bacteroides xylanisolvens SD CC 1b] gi|298273629|gb|EFI15192.1| NADH-ubiquinone oxidoreductase, NQO9 subunit (NQO9) [Bacteroides sp. D22] Length = 162 Score = 83.2 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 39/129 (30%), Positives = 57/129 (44%), Gaps = 5/129 (3%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGS--TSPRFRGEHALRRYPNGEERCIACKLCE 70 + ++ +F+ K T YP + RFRG + N E RC+AC LC+ Sbjct: 18 ISTLATGMKTSIKVYFRKKVTEQYPENRKELKMFDRFRGTLNMPHNENNEHRCVACGLCQ 77 Query: 71 AICPAQAITIESGPRCHDGTRRTVR---YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CP I + S + ++ Y+ D+ C++C LC ACP DAI NFE A Sbjct: 78 MACPNDTIKVTSETVETEDGKKKKILATYEYDLGACMFCQLCVNACPHDAITFDQNFEHA 137 Query: 128 TETRQELYY 136 R +L Sbjct: 138 VFDRTKLVL 146 >gi|153807448|ref|ZP_01960116.1| hypothetical protein BACCAC_01728 [Bacteroides caccae ATCC 43185] gi|149129810|gb|EDM21022.1| hypothetical protein BACCAC_01728 [Bacteroides caccae ATCC 43185] Length = 162 Score = 83.2 bits (204), Expect = 1e-14, Method: Composition-based stats. Identities = 40/129 (31%), Positives = 58/129 (44%), Gaps = 5/129 (3%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGS--TSPRFRGEHALRRYPNGEERCIACKLCE 70 + ++ +F+ K T YP + RFRG + N E RC+AC LC+ Sbjct: 18 ISTLATGMKTSIKVYFRKKVTEQYPENRKELKMFDRFRGTLNMPHNENNEHRCVACGLCQ 77 Query: 71 AICPAQAITIESGPRCHDGTRRTV---RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CP I + S + ++ RY+ D+ C++C LC ACP DAI NFE A Sbjct: 78 MACPNDTIKVISETIETEDGKKKKILARYEYDLGACMFCQLCVNACPHDAITFDQNFEHA 137 Query: 128 TETRQELYY 136 R +L Sbjct: 138 VFDRTKLVL 146 >gi|238799240|ref|ZP_04642687.1| Hydrogenase-4 component H [Yersinia mollaretii ATCC 43969] gi|238716905|gb|EEQ08774.1| Hydrogenase-4 component H [Yersinia mollaretii ATCC 43969] Length = 184 Score = 82.8 bits (203), Expect = 1e-14, Method: Composition-based stats. Identities = 40/129 (31%), Positives = 59/129 (45%), Gaps = 10/129 (7%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 TT+ YPF+ S FRG+ E+CIAC C CPA A+T+E+ Sbjct: 14 TTVKYPFKPLEVSQGFRGKP-----QYDAEQCIACGACTLACPANALTMETDIANGT--- 65 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 ++ + + +CI+CG C+E CP AIV FE A + +LY L + + +S Sbjct: 66 --RQWQLFLGRCIFCGRCEEVCPTRAIVLSQEFELAVFNKADLYQRASFTLAHCQQCQSA 123 Query: 152 IVRNIVTDS 160 D Sbjct: 124 FAPKKEVDY 132 >gi|57234302|ref|YP_181653.1| proton-translocating NADH-quinone oxidoreductase, I subunit [Dehalococcoides ethenogenes 195] gi|57224750|gb|AAW39807.1| proton-translocating NADH-quinone oxidoreductase, I subunit [Dehalococcoides ethenogenes 195] Length = 169 Score = 82.8 bits (203), Expect = 1e-14, Method: Composition-based stats. Identities = 38/111 (34%), Positives = 53/111 (47%), Gaps = 6/111 (5%) Query: 20 FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79 L ++ F+ T+ YP EK + S R RG + +E CIAC C CP +AI Sbjct: 1 MRLTFKHLFRPWITVQYPEEKLTMSKRIRGTQVIWV----KETCIACLACARACPVKAIN 56 Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-AIVEGPNFEFATE 129 +E R D + ID C++CGLC E+CP +I G +E T Sbjct: 57 MEVS-RGEDRKLKVDHMSIDFGLCVFCGLCVESCPTKTSIYMGYGYETTTY 106 >gi|18977813|ref|NP_579170.1| NADH dehydrogenase subunit I [Pyrococcus furiosus DSM 3638] gi|18893564|gb|AAL81565.1| NADH dehydrogenase subunit [Pyrococcus furiosus DSM 3638] Length = 208 Score = 82.8 bits (203), Expect = 1e-14, Method: Composition-based stats. Identities = 38/119 (31%), Positives = 55/119 (46%), Gaps = 12/119 (10%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80 + L+Y FK TI P+E +PR+RG H L ++CI C +C ICPA+AI + Sbjct: 24 WFGLKYLFKKPVTIKIPYEFIEPAPRYRGFHTL-----DWKKCIGCNMCGQICPARAIEM 78 Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE--LYYD 137 + ID +C +C C + CP A+ + T R+E L YD Sbjct: 79 TWIE-----GEKRPHPKIDYGRCTFCQFCVDVCPTGALGFIETYMLTTTWREEELLLYD 132 >gi|332157675|ref|YP_004422954.1| NADH dehydrogenase subunit I [Pyrococcus sp. NA2] gi|331033138|gb|AEC50950.1| NADH dehydrogenase subunit I [Pyrococcus sp. NA2] Length = 202 Score = 82.8 bits (203), Expect = 1e-14, Method: Composition-based stats. Identities = 36/113 (31%), Positives = 54/113 (47%), Gaps = 6/113 (5%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80 +L L+Y FK TI P+EK +P++RG H L ++CI C C ICPA+AI + Sbjct: 21 WLGLKYLFKKPVTIKIPYEKIDPAPKYRGFHTL-----DWKKCIGCNFCGQICPARAIEM 75 Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 +R ID +C +C C + CP A+ ++ T +E Sbjct: 76 TWIEVDGKLEKRP-HPKIDYGRCTFCQFCVDVCPTGALGFVESYILTTTGDEE 127 >gi|189468080|ref|ZP_03016865.1| hypothetical protein BACINT_04474 [Bacteroides intestinalis DSM 17393] gi|189436344|gb|EDV05329.1| hypothetical protein BACINT_04474 [Bacteroides intestinalis DSM 17393] Length = 170 Score = 82.8 bits (203), Expect = 1e-14, Method: Composition-based stats. Identities = 36/130 (27%), Positives = 54/130 (41%), Gaps = 5/130 (3%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEK--GSTSPRFRGEHALRRYPNGEERCIACKLCE 70 + + + F + K T YP + RFRG + E CIAC LC+ Sbjct: 18 IGSLLTGMKTTMTVFCRRKVTEQYPENRATLEMFDRFRGTLTMPHNERNEHHCIACGLCQ 77 Query: 71 AICPAQAITIESGPRCHDGTRRTV---RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CP I + S + ++ +Y+ D+ C++C LC ACP AI +FE A Sbjct: 78 IACPNDTIKVTSEMIETEDGKKKKILAKYEYDLGSCMFCQLCVTACPHGAITFATDFEHA 137 Query: 128 TETRQELYYD 137 R +L Sbjct: 138 VFDRTKLVKT 147 >gi|261868404|ref|YP_003256326.1| hydrogenase-4 subunit H [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413736|gb|ACX83107.1| hydrogenase-4 component H [Aggregatibacter actinomycetemcomitans D11S-1] Length = 215 Score = 82.8 bits (203), Expect = 1e-14, Method: Composition-based stats. Identities = 38/117 (32%), Positives = 54/117 (46%), Gaps = 11/117 (9%) Query: 20 FFLCLRYFFK-AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78 F L+ FK T YPF+ FRG+ L CI C C CPA A+ Sbjct: 1 MFKLLKTVFKAGDVTTKYPFKPYEVDDDFRGKPELNSDQ-----CIVCAACTMACPANAL 55 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 T+ + P D + + + +CI+CG C+E CP AI +FE + +Q+LY Sbjct: 56 TMRTDPVTGD-----RTWSLFLGRCIFCGRCEEVCPTKAIRLTQDFELSVTNKQDLY 107 >gi|299148402|ref|ZP_07041464.1| NADH-ubiquinone oxidoreductase, NQO9 subunit (NQO9) [Bacteroides sp. 3_1_23] gi|298513163|gb|EFI37050.1| NADH-ubiquinone oxidoreductase, NQO9 subunit (NQO9) [Bacteroides sp. 3_1_23] Length = 162 Score = 82.8 bits (203), Expect = 1e-14, Method: Composition-based stats. Identities = 39/129 (30%), Positives = 57/129 (44%), Gaps = 5/129 (3%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGS--TSPRFRGEHALRRYPNGEERCIACKLCE 70 + ++ +F+ K T YP + RFRG + N E RC+AC LC+ Sbjct: 18 ISTLATGMKTSIKVYFRKKVTEQYPENRKELKMFDRFRGTLNMPHNENNEHRCVACGLCQ 77 Query: 71 AICPAQAITIESGPRCHDGTRRTVR---YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CP I + S + ++ Y+ D+ C++C LC ACP DAI NFE A Sbjct: 78 MACPNDTIKVTSETVETEDGKKKKILATYEYDLGACMFCQLCVNACPHDAITFDQNFEHA 137 Query: 128 TETRQELYY 136 R +L Sbjct: 138 VFDRTKLVL 146 >gi|288801147|ref|ZP_06406603.1| NADH-quinone oxidoreductase subunit I (NADH dehydrogenase I subunit I) [Prevotella sp. oral taxon 299 str. F0039] gi|288332081|gb|EFC70563.1| NADH-quinone oxidoreductase subunit I (NADH dehydrogenase I subunit I) [Prevotella sp. oral taxon 299 str. F0039] Length = 203 Score = 82.8 bits (203), Expect = 2e-14, Method: Composition-based stats. Identities = 35/127 (27%), Positives = 57/127 (44%), Gaps = 5/127 (3%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEA 71 K + + + +F K T YP + + S R RG + +G+ +C+AC +CE+ Sbjct: 17 KSLLTGMGVTWKEYFTPKITEQYPENRKTVHISARHRGTLIMPHDEDGKNKCVACLMCES 76 Query: 72 ICPAQAITIESGPRCHDGTRRT---VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 CP I I+ ++ Y+ D+ C++C LC AC DAI +FE + Sbjct: 77 ACPNGTIRIKWDNVVTPDGKKKRLLQDYEYDLGDCMFCQLCVNACNYDAIHFSNSFEHSV 136 Query: 129 ETRQELY 135 R L Sbjct: 137 FNRNVLV 143 >gi|74313014|ref|YP_311433.1| hydrogenase 4 subunit H [Shigella sonnei Ss046] gi|73856491|gb|AAZ89198.1| hydrogenase 4 Fe-S subunit [Shigella sonnei Ss046] gi|323169073|gb|EFZ54750.1| hydrogenase-4 component H [Shigella sonnei 53G] gi|323170246|gb|EFZ55899.1| hydrogenase-4 component H [Escherichia coli LT-68] Length = 179 Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 41/138 (29%), Positives = 58/138 (42%), Gaps = 15/138 (10%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + +R T+ YPF SP FRG+ L +CIAC C CPA Sbjct: 1 MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLM-----PSQCIACGACA--CPA 50 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A+TI++ + + + + + +CIYCG C+E CP AI NFE + +LY Sbjct: 51 NALTIQTDDQQNS-----RTWQLYLRRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 105 Query: 136 YDKERLLNNGDRWESEIV 153 L R E Sbjct: 106 TRATFHLQRCSRCERPFA 123 >gi|312129477|ref|YP_003996817.1| 4fe-4S ferredoxin iroN-sulfur binding domain protein [Leadbetterella byssophila DSM 17132] gi|311906023|gb|ADQ16464.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Leadbetterella byssophila DSM 17132] Length = 576 Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 64/196 (32%), Gaps = 44/196 (22%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAK--------------------TTINYPFEKGS 42 FR + + L L++ + A+ T+ YP + Sbjct: 17 YFRNILRGIRTTS--KGLGLTLKHLWAARHSKGHMELRSTEFFQVDEGNVTLQYPHARLE 74 Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR---------RT 93 G + L + CI C C +CP I IE+ Sbjct: 75 VPDT--GRYQLDCEIDD---CIVCDKCAKVCPVDCIEIEAIKSPELIRYASDGSPVRLHA 129 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY--------DKERLLNNG 145 +++IDM KC +CGLC CP + + ++F+ E L + + E Sbjct: 130 AKFNIDMAKCCFCGLCTTVCPTECLTMTSEYDFSVEEVDLLNFAFSNLSAKEAEEKRELY 189 Query: 146 DRWESEIVRNIVTDSP 161 ++ +E + D P Sbjct: 190 QQFVAEKEASKALDKP 205 >gi|191169663|ref|ZP_03031362.1| iron-sulfur cluster-binding protein [Escherichia coli B7A] gi|209919964|ref|YP_002294048.1| hydrogenase 4 subunit H [Escherichia coli SE11] gi|218555014|ref|YP_002387927.1| hydrogenase 4 subunit H [Escherichia coli IAI1] gi|218696115|ref|YP_002403782.1| hydrogenase 4 subunit H [Escherichia coli 55989] gi|307312518|ref|ZP_07592151.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia coli W] gi|309794468|ref|ZP_07688891.1| hydrogenase 4 subunit H [Escherichia coli MS 145-7] gi|190900297|gb|EDV60147.1| iron-sulfur cluster-binding protein [Escherichia coli B7A] gi|209913223|dbj|BAG78297.1| hydrogenase 4 Fe-S subunit [Escherichia coli SE11] gi|218352847|emb|CAU98646.1| hydrogenase 4, Fe-S subunit [Escherichia coli 55989] gi|218361782|emb|CAQ99379.1| hydrogenase 4, Fe-S subunit [Escherichia coli IAI1] gi|306907441|gb|EFN37945.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia coli W] gi|308121924|gb|EFO59186.1| hydrogenase 4 subunit H [Escherichia coli MS 145-7] gi|315061807|gb|ADT76134.1| hydrogenase 4, Fe-S subunit [Escherichia coli W] gi|320200048|gb|EFW74637.1| Hydrogenase-4 component H [Escherichia coli EC4100B] gi|323377612|gb|ADX49880.1| hydrogenase 4 subunit H [Escherichia coli KO11] gi|324020087|gb|EGB89306.1| hydrogenase 4 subunit H [Escherichia coli MS 117-3] gi|324118168|gb|EGC12065.1| 4Fe-4S binding domain-containing protein [Escherichia coli E1167] Length = 179 Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 41/138 (29%), Positives = 58/138 (42%), Gaps = 15/138 (10%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + +R T+ YPF SP FRG+ L +CIAC C CPA Sbjct: 1 MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLM-----PSQCIACGACA--CPA 50 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A+TI++ + + + + + +CIYCG C+E CP AI NFE + +LY Sbjct: 51 NALTIQTDDQQNS-----RTWQLYLRRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 105 Query: 136 YDKERLLNNGDRWESEIV 153 L R E Sbjct: 106 TRATFHLQRCSRCERPFA 123 >gi|146304647|ref|YP_001191963.1| NADH dehydrogenase subunit I [Metallosphaera sedula DSM 5348] gi|145702897|gb|ABP96039.1| NADH-quinone oxidoreductase, chain I [Metallosphaera sedula DSM 5348] Length = 169 Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 38/132 (28%), Positives = 61/132 (46%), Gaps = 13/132 (9%) Query: 17 VGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + A ++YF K + T+ YP E S +RG L + CI C LC +CPA Sbjct: 23 LQAVGAGIKYFVKPQRITLKYPDESMSLPTGYRGMIRLYKD-----VCIGCTLCAMVCPA 77 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A+ + + I+ +C++C C + CPVDA+ E + A R+EL Sbjct: 78 DAMKMVTDQGKKFP-------TINYGRCVFCAFCVDICPVDALKETGVHDAAFSNRRELI 130 Query: 136 YDKERLLNNGDR 147 ++ ER + D+ Sbjct: 131 FNPERFDQDFDQ 142 >gi|187733421|ref|YP_001881278.1| hydrogenase 4 subunit H [Shigella boydii CDC 3083-94] gi|187430413|gb|ACD09687.1| iron-sulfur cluster-binding protein [Shigella boydii CDC 3083-94] Length = 179 Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 41/138 (29%), Positives = 58/138 (42%), Gaps = 15/138 (10%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + +R T+ YPF SP FRG+ L +CIAC C CPA Sbjct: 1 MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLM-----PSQCIACGACT--CPA 50 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A+TI++ + + + + + +CIYCG C+E CP AI NFE + +LY Sbjct: 51 NALTIQTDDQQNS-----RTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 105 Query: 136 YDKERLLNNGDRWESEIV 153 L R E Sbjct: 106 TRATFHLQRCSRCERPFA 123 >gi|293446842|ref|ZP_06663264.1| hyfH [Escherichia coli B088] gi|291323672|gb|EFE63100.1| hyfH [Escherichia coli B088] gi|323184455|gb|EFZ69830.1| hydrogenase-4 component H [Escherichia coli 1357] Length = 179 Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 41/141 (29%), Positives = 59/141 (41%), Gaps = 15/141 (10%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + +R T+ YPF SP FRG+ L +CIAC C CPA Sbjct: 1 MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLM-----PSQCIACGACA--CPA 50 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A+TI++ + + + + + +CIYCG C+E CP AI NFE + +LY Sbjct: 51 NALTIQTDDQQNS-----RTWQLYLRRCIYCGRCEEVCPTRAIQLTNNFEPTVTNKADLY 105 Query: 136 YDKERLLNNGDRWESEIVRNI 156 L R E + Sbjct: 106 TRATFHLQRCSRCERPFAQQK 126 >gi|15922548|ref|NP_378217.1| NADH dehydrogenase subunit I [Sulfolobus tokodaii str. 7] gi|15623338|dbj|BAB67326.1| 169aa long hypothetical NADH-plastoquinone oxidoreductase subunit 9 [Sulfolobus tokodaii str. 7] Length = 169 Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 34/137 (24%), Positives = 61/137 (44%), Gaps = 13/137 (9%) Query: 12 FLKEFVGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70 + + A ++Y + + T+ YP E + +RG L + CI C LC Sbjct: 18 LFVDHLNAVGTGIKYMIQPQRITLKYPEESLTLPTGYRGMIRLYKD-----ICIGCTLCA 72 Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 ICPA A+ + + + I+ +C++CG C + CPVDA+ E + Sbjct: 73 LICPADAMKMVTEGGKKFPS-------INYGRCVFCGFCVDVCPVDALKETRVHDAVFTN 125 Query: 131 RQELYYDKERLLNNGDR 147 R++L + +R + D+ Sbjct: 126 RRDLVFRPDRFDQDFDQ 142 >gi|224538208|ref|ZP_03678747.1| hypothetical protein BACCELL_03099 [Bacteroides cellulosilyticus DSM 14838] gi|224520176|gb|EEF89281.1| hypothetical protein BACCELL_03099 [Bacteroides cellulosilyticus DSM 14838] Length = 166 Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 37/130 (28%), Positives = 55/130 (42%), Gaps = 5/130 (3%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEK--GSTSPRFRGEHALRRYPNGEERCIACKLCE 70 + + + F + K T YP + RFRG + E CIAC LC+ Sbjct: 14 IGSLLTGMKTTMTVFCRRKVTEQYPENRATLEMFDRFRGTLTMPHNDRNEHHCIACGLCQ 73 Query: 71 AICPAQAITIESGPRCHDGTRRTV---RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CP I + S + ++ +Y+ D+ C++C LC ACP DAI +FE A Sbjct: 74 IACPNDTIKVTSEMIETEDGKKKKILAKYEYDLGSCMFCQLCVTACPHDAITFATDFEHA 133 Query: 128 TETRQELYYD 137 R +L Sbjct: 134 VFDRTKLVKT 143 >gi|160886844|ref|ZP_02067847.1| hypothetical protein BACOVA_04858 [Bacteroides ovatus ATCC 8483] gi|156107255|gb|EDO09000.1| hypothetical protein BACOVA_04858 [Bacteroides ovatus ATCC 8483] Length = 165 Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 39/129 (30%), Positives = 57/129 (44%), Gaps = 5/129 (3%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGS--TSPRFRGEHALRRYPNGEERCIACKLCE 70 + ++ +F+ K T YP + RFRG + N E RC+AC LC+ Sbjct: 21 ISTLATGMKTSIKVYFRKKVTEQYPENRKELKMFDRFRGTLNMPHNENNEHRCVACGLCQ 80 Query: 71 AICPAQAITIESGPRCHDGTRRTVR---YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 CP I + S + ++ Y+ D+ C++C LC ACP DAI NFE A Sbjct: 81 MACPNDTIKVTSETVETEDGKKKKILATYEYDLGACMFCQLCVNACPHDAITFDQNFEHA 140 Query: 128 TETRQELYY 136 R +L Sbjct: 141 VFDRTKLVL 149 >gi|238793445|ref|ZP_04637070.1| Hydrogenase-4 component H [Yersinia intermedia ATCC 29909] gi|238727218|gb|EEQ18747.1| Hydrogenase-4 component H [Yersinia intermedia ATCC 29909] Length = 184 Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 41/145 (28%), Positives = 61/145 (42%), Gaps = 13/145 (8%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F L+ TT+ YPF+ S FRG+ E+CIAC C CPA Sbjct: 1 MFKLFKTILKV---GDTTVKYPFKPLEVSHGFRGKP-----QYDAEQCIACGACTMACPA 52 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A+T+E+ ++ + + +CI+CG C+E CP AIV FE A + +LY Sbjct: 53 NALTMETDLASGT-----RQWQLFLGRCIFCGRCEEVCPTRAIVLSQEFELAVFNKADLY 107 Query: 136 YDKERLLNNGDRWESEIVRNIVTDS 160 L + + + D Sbjct: 108 QRASFTLTHCQQCQQPFAPKKEVDY 132 >gi|239618411|ref|YP_002941733.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Kosmotoga olearia TBF 19.5.1] gi|239507242|gb|ACR80729.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Kosmotoga olearia TBF 19.5.1] Length = 604 Score = 82.5 bits (202), Expect = 2e-14, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 51/133 (38%), Gaps = 6/133 (4%) Query: 7 NVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIAC 66 N +F K F + +Y F TI P + R+RG H N E C C Sbjct: 2 NAKEIFKKTFW-GPTIAWKYLFAKPITITVPKVYREAAERYRGFHI-----NDWELCTGC 55 Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 C ICP AI + + + + ID +C +CG+C + C ++ + Sbjct: 56 GTCSKICPTDAIKMIPVDIETEPGEKAEKPAIDYGRCSFCGMCVDICTTGSLKMTREYIH 115 Query: 127 ATETRQELYYDKE 139 ++ ++ E Sbjct: 116 ISDNPNTFFFMPE 128 >gi|242399878|ref|YP_002995303.1| Membrane-bound NADP+-reducing complex MBX, subunit MbxN (dehydrogenase subunit) [Thermococcus sibiricus MM 739] gi|242266272|gb|ACS90954.1| Membrane-bound NADP+-reducing complex MBX, subunit MbxN (dehydrogenase subunit) [Thermococcus sibiricus MM 739] Length = 202 Score = 82.1 bits (201), Expect = 2e-14, Method: Composition-based stats. Identities = 33/113 (29%), Positives = 53/113 (46%), Gaps = 10/113 (8%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80 +L ++Y FK TI P+E + ++RG H L + CI C +C ICPA+AI + Sbjct: 24 WLSIKYLFKKPVTIKIPYEPTQIAEKYRGFHTLNW-----KTCIGCNMCGQICPARAIEM 78 Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 + ID +C +C C + CP A+ ++ TE ++E Sbjct: 79 TWIE-----GEKRAHPKIDYGRCTFCQFCVDVCPTGALGHVEHYLLTTEWKEE 126 >gi|290558868|gb|EFD92259.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Candidatus Parvarchaeum acidophilus ARMAN-5] gi|290559404|gb|EFD92736.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Candidatus Parvarchaeum acidophilus ARMAN-5] Length = 193 Score = 82.1 bits (201), Expect = 2e-14, Method: Composition-based stats. Identities = 42/132 (31%), Positives = 62/132 (46%), Gaps = 8/132 (6%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 +KE + AF L+ + T YP + R RG +L E CI C+LC I Sbjct: 3 IKETIEAFGYGLKESITKRATYPYPDKPLPIQKRSRGMLSL-----DLENCIGCELCYKI 57 Query: 73 CPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 CP+ AI ++ G R + ID KCI+CGLC E CP + ++ +T+ Sbjct: 58 CPSDAIRMQKIDFKEAGFHTNARSEAPAIDFNKCIFCGLCSEICPPKVLHHTHKYDISTD 117 Query: 130 TRQELYYDKERL 141 R+EL + +L Sbjct: 118 DRKELIHSPFKL 129 >gi|170289768|ref|YP_001736584.1| NADH dehydrogenase subunit I [Candidatus Korarchaeum cryptofilum OPF8] gi|170173848|gb|ACB06901.1| NADH dehydrogenase subunit I [Candidatus Korarchaeum cryptofilum OPF8] Length = 163 Score = 82.1 bits (201), Expect = 2e-14, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 54/126 (42%), Gaps = 7/126 (5%) Query: 17 VGAFFLCLRYFF-KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + A F ++Y F + TI YP E +RG + CI C LC +CPA Sbjct: 10 LKAIFTGMKYLFLGPRLTIMYPDEIEDLPEDYRGMIE-----YDWDSCIKCSLCAMVCPA 64 Query: 76 QAITIE-SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134 A+ + S + R I+ +C++CG C + CP +++ + A T +E Sbjct: 65 DAMKMYVSKEESEKEGKVVKRPGINYTRCVFCGFCVDICPTNSLRFTKVHDVAYYTYEEQ 124 Query: 135 YYDKER 140 Y + Sbjct: 125 IYPPQE 130 >gi|90410735|ref|ZP_01218750.1| hydrogenase 4 Fe-S subunit [Photobacterium profundum 3TCK] gi|90328366|gb|EAS44664.1| hydrogenase 4 Fe-S subunit [Photobacterium profundum 3TCK] Length = 182 Score = 82.1 bits (201), Expect = 2e-14, Method: Composition-based stats. Identities = 37/122 (30%), Positives = 56/122 (45%), Gaps = 13/122 (10%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 ++ + T YPF S FRG+ L +C++C C CPA Sbjct: 1 MFKLLKTVIKT---GEATTKYPFAPLEISGDFRGKPEL-----DANQCLSCGACTRACPA 52 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A+ +E+ + R+++ M +CIYCG C+E CP AI NFE A +++LY Sbjct: 53 NALIMETDVKAGT-----RRWELSMARCIYCGRCEEVCPTKAITLSQNFELAVTRKEDLY 107 Query: 136 YD 137 D Sbjct: 108 ED 109 >gi|257053292|ref|YP_003131125.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Halorhabdus utahensis DSM 12940] gi|256692055|gb|ACV12392.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Halorhabdus utahensis DSM 12940] Length = 119 Score = 82.1 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 36/112 (32%), Positives = 52/112 (46%), Gaps = 11/112 (9%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 L+ K + T++YP K + RFRG + C C +CE C A AI + + Sbjct: 11 ALKTLGKDRATVSYPKNKRTLPDRFRGAVEF-----DPDPCTGCGMCERHCAADAIVVGT 65 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134 + V KC++CG C+E+CP DAIV G +FE A R+ Sbjct: 66 DDDGNVTWEYDV------AKCMFCGQCEESCPTDAIVMGKDFELADSDRESF 111 >gi|254172023|ref|ZP_04878699.1| NADH dehydrogenase subunit i [Thermococcus sp. AM4] gi|214033919|gb|EEB74745.1| NADH dehydrogenase subunit i [Thermococcus sp. AM4] Length = 226 Score = 82.1 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 54/113 (47%), Gaps = 6/113 (5%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80 ++ ++Y FK TI PFEK +P++RG H L ++C+ C C ICPA+AI + Sbjct: 20 WMGIKYLFKKPVTIKIPFEKIEPAPKYRGFHTL-----DWKKCVGCNFCGQICPARAIEM 74 Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 +R +D +C +C C + CP A+ + T+ ++ Sbjct: 75 TWLEVDGKMEKRP-HPKVDYGRCTFCQFCVDVCPTGALGFSEAYILTTDGTED 126 >gi|57641149|ref|YP_183627.1| NADH dehydrogenase subunit I [Thermococcus kodakarensis KOD1] gi|57159473|dbj|BAD85403.1| membrane bound hydrogenase, 4Fe-4S cluster-binding subunit [Thermococcus kodakarensis KOD1] Length = 217 Score = 82.1 bits (201), Expect = 3e-14, Method: Composition-based stats. Identities = 32/108 (29%), Positives = 51/108 (47%), Gaps = 6/108 (5%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80 ++ ++Y FK TI P+EK +P++RG H L ++C+ C C ICPA+AI + Sbjct: 24 WMGIKYLFKKPVTIKIPYEKIEPAPKYRGFHTL-----DWKKCVGCNFCGQICPARAIEM 78 Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 R +D +C +C C + CP A+ N+ T Sbjct: 79 TWIEVNGHIATRP-HPKVDYGRCTFCQFCVDVCPTGALGFSENYYLTT 125 >gi|332702765|ref|ZP_08422853.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfovibrio africanus str. Walvis Bay] gi|332552914|gb|EGJ49958.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfovibrio africanus str. Walvis Bay] Length = 224 Score = 81.7 bits (200), Expect = 3e-14, Method: Composition-based stats. Identities = 34/153 (22%), Positives = 58/153 (37%), Gaps = 28/153 (18%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE--ERCIACKLCE 70 + + + + FF+ + T++YP + FRG L P RCI C LC Sbjct: 14 MWSLIVGLRVTTKNFFQPQVTVHYPRQSVDNLSTFRGHIELVGQPKDPATPRCITCMLCA 73 Query: 71 AICPAQAITIESGPRCHDGTRRTVR--------------------------YDIDMIKCI 104 +CP+Q I+I + + ++++ C Sbjct: 74 TVCPSQCISITKAKAPPPEPAKKLPDHAEGPLVPPEKAEPPKAKVIKTPGSFELNFNTCS 133 Query: 105 YCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 CG+C + CPV ++ + A +RQE YD Sbjct: 134 LCGMCVQNCPVSSLRFSTDVYAAGFSRQEFEYD 166 >gi|294674396|ref|YP_003575012.1| proton-translocating NADH-quinone oxidoreductase I subunit [Prevotella ruminicola 23] gi|294472661|gb|ADE82050.1| putative proton-translocating NADH-quinone oxidoreductase, I subunit [Prevotella ruminicola 23] Length = 181 Score = 81.7 bits (200), Expect = 3e-14, Method: Composition-based stats. Identities = 43/158 (27%), Positives = 58/158 (36%), Gaps = 21/158 (13%) Query: 13 LKEFVGAFFLCLRY----FFKAKTTINYPFEK---GSTSPRFRGEHALRRYPNGEERCIA 65 LK + + FF K+T YP + S R RG +R +G +C A Sbjct: 15 LKTLATGMKITWKEYFKDFFTNKSTEQYPENRKTTLHVSKRHRGRLTFKRNEDGSYKCTA 74 Query: 66 CKLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C LCE CP I + P + Y D+ C++C LC AC DAI Sbjct: 75 CTLCEKACPNGTIKITAHMAEDPETGKKKKVLDDYAYDLGDCMFCQLCTNACNFDAIEFT 134 Query: 122 PNFEFATETRQELYYDKER----------LLNNGDRWE 149 +FE A R L L+ G W+ Sbjct: 135 NDFENAVFDRSRLVLHLNEEVYAGGSLPNLIEGGAEWQ 172 >gi|326799613|ref|YP_004317432.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Sphingobacterium sp. 21] gi|326550377|gb|ADZ78762.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Sphingobacterium sp. 21] Length = 187 Score = 81.7 bits (200), Expect = 3e-14, Method: Composition-based stats. Identities = 37/149 (24%), Positives = 57/149 (38%), Gaps = 34/149 (22%) Query: 17 VGAFFLCLRYFFKAK--------------------TTINYPFEKGSTSPRFRGEHALRRY 56 + + L++FF A+ TTI YP ++ R + Sbjct: 13 LKGLSITLKHFFAARKARKELDIKQENYFEKQEGVTTIQYPKQEIPIPEVAR-----YQL 67 Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTR---------RTVRYDIDMIKCIYCG 107 + CI C LC CP I+IE+ + ++DIDM KC+YCG Sbjct: 68 DVEIDDCIVCDLCAKACPVDCISIEAIKATEAIGKTSDGSVKRLYAAKFDIDMAKCMYCG 127 Query: 108 LCQEACPVDAIVEGPNFEFATETRQELYY 136 LC CP + I N++ + +L Y Sbjct: 128 LCTVVCPTECITMTDNYDRSFSNLSDLIY 156 >gi|7649018|gb|AAF65736.1|AF228525_6 F420H2 dehydrogenase subunit FpoI [Methanosarcina mazei Go1] Length = 136 Score = 81.7 bits (200), Expect = 3e-14, Method: Composition-based stats. Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 7/128 (5%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + L+ K + T P + S RFRG L + +CI C +C CP Sbjct: 2 VLKNIKYALKNIPKERVTRLCPEVESPLSERFRGLQTL-----DKSKCIGCGICANTCPN 56 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF--EFATETRQE 133 AI I P ++ ID+ C++CGLC + CP A+ G + ++ Sbjct: 57 SAIKIVKAPIAPGSEKKRWFPQIDIGHCLFCGLCIDQCPKGALSSGKEYCKGMVKWAHKD 116 Query: 134 LYYDKERL 141 L E+L Sbjct: 117 LLMTPEKL 124 >gi|119719100|ref|YP_919595.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Thermofilum pendens Hrk 5] gi|119524220|gb|ABL77592.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermofilum pendens Hrk 5] Length = 194 Score = 81.3 bits (199), Expect = 4e-14, Method: Composition-based stats. Identities = 35/119 (29%), Positives = 53/119 (44%), Gaps = 13/119 (10%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + LR T+ YPF+ FRG+ + C+ C C +CP Sbjct: 3 IRQILKIALRE---GVATLEYPFKPEEAPEDFRGKPEI-----DPSICMGCGACANVCPP 54 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134 AIT R + I +CI+CG C+EACP+ AI + +E A++TR++L Sbjct: 55 DAITCVDDLE-----RGLRTWKIFYGRCIFCGRCEEACPLSAIRQSKEYELASKTREDL 108 >gi|194379558|dbj|BAG63745.1| unnamed protein product [Homo sapiens] Length = 171 Score = 81.3 bits (199), Expect = 4e-14, Method: Composition-based stats. Identities = 49/110 (44%), Positives = 56/110 (50%), Gaps = 4/110 (3%) Query: 1 MR-IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59 M+ + L E + L Y F+ TINYPFEKG SPR RGEHALRRYP+G Sbjct: 48 MKSVTDRAARTLLWTELFRGLGMTLSYLFREPATINYPFEKGPLSPRLRGEHALRRYPSG 107 Query: 60 EERCIACKLCEAICPAQ---AITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 EERCIACKLCEAICPAQ G + C+ C Sbjct: 108 EERCIACKLCEAICPAQVSPCPNRPPRQPLPLGEGGQAALGPNPSPCLMC 157 >gi|90407578|ref|ZP_01215759.1| hydrogenase 4 Fe-S subunit [Psychromonas sp. CNPT3] gi|90311281|gb|EAS39385.1| hydrogenase 4 Fe-S subunit [Psychromonas sp. CNPT3] Length = 206 Score = 81.3 bits (199), Expect = 4e-14, Method: Composition-based stats. Identities = 37/103 (35%), Positives = 51/103 (49%), Gaps = 10/103 (9%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 TI YPF FRG+ + E+CIAC C CPA A+ +E+ + Sbjct: 16 TIQYPFAPLEVCDDFRGKPE-----HDPEQCIACAACTQACPANALIMETDTENNL---- 66 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 R++I +CIYCG C+E CP +AI FE A + +LY Sbjct: 67 -RRWEISFARCIYCGRCEEVCPTNAITLSQEFELAVTNKADLY 108 >gi|124027084|ref|YP_001012404.1| NADH-ubiquinone oxidoreductase subunit 8 [Hyperthermus butylicus DSM 5456] gi|123977778|gb|ABM80059.1| NADH-ubiquinone oxidoreductase subunit 8 [Hyperthermus butylicus DSM 5456] Length = 181 Score = 81.3 bits (199), Expect = 4e-14, Method: Composition-based stats. Identities = 44/147 (29%), Positives = 66/147 (44%), Gaps = 18/147 (12%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V A LR K T+ YP + FRG ++CI C LC ICPA+ Sbjct: 34 VSAISAALRRASKKPMTLMYPTVEEEKPQLFRGFIL-----YDYDKCIGCSLCAQICPAR 88 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 AI + P + +R D+ +CIYCGLC + CP DA++ F+ E +++ + Sbjct: 89 AIKMYRVP-----GDKRLRPGYDVGRCIYCGLCTDICPTDALILSDRFDHVFEKLEDMIF 143 Query: 137 DKERLLNNGDRWESEIVRNIVTDSPYR 163 D W ++I + I + P R Sbjct: 144 DP-------IDW-AQISKKIREEKPTR 162 >gi|193216257|ref|YP_001997456.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Chloroherpeton thalassium ATCC 35110] gi|193089734|gb|ACF15009.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chloroherpeton thalassium ATCC 35110] Length = 268 Score = 81.3 bits (199), Expect = 4e-14, Method: Composition-based stats. Identities = 40/179 (22%), Positives = 56/179 (31%), Gaps = 43/179 (24%) Query: 14 KEFVGAFFLCLRYFFKAK--------------------TTINYPFEKGSTSPRFRGEHAL 53 + + ++ A T+ YP E T R Sbjct: 13 TTILTGLGITWKHLLNATKRKGFAGIAEDHYFNQVDGLVTLQYPSEAVPTPSFAR----- 67 Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHD-------------GTRRTVRYDIDM 100 R N + CI C C CP + ITI S D +DIDM Sbjct: 68 YRLHNEIDDCIGCDQCAKACPVKCITIGSFKATPDDIEILGTTSDGTKKRLWIPVFDIDM 127 Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY-----DKERLLNNGDRWESEIVR 154 KC++CGLC CP + + P +F R+ L Y KE + + E Sbjct: 128 GKCMFCGLCTYPCPTECLTMTPVHDFTEFDREHLIYHFGNMTKEMEADKRKKLEQFEAE 186 >gi|67539066|ref|XP_663307.1| hypothetical protein AN5703.2 [Aspergillus nidulans FGSC A4] gi|40743606|gb|EAA62796.1| hypothetical protein AN5703.2 [Aspergillus nidulans FGSC A4] Length = 64 Score = 81.3 bits (199), Expect = 4e-14, Method: Composition-based stats. Identities = 43/64 (67%), Positives = 50/64 (78%) Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 M KCIYCG CQE+CPVDAIVE N E+ATETR+EL Y+KE+LL NGD+WE EI D Sbjct: 1 MTKCIYCGYCQESCPVDAIVETANAEYATETREELLYNKEKLLANGDKWEPEIAAAARAD 60 Query: 160 SPYR 163 +PYR Sbjct: 61 APYR 64 >gi|218886693|ref|YP_002436014.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757647|gb|ACL08546.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 207 Score = 80.9 bits (198), Expect = 5e-14, Method: Composition-based stats. Identities = 36/151 (23%), Positives = 52/151 (34%), Gaps = 26/151 (17%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYP--FEKGSTSPRFRGEHALRRYPNGE--ERCIACKL 68 L V + + F K T++YP + FRG L +CIAC L Sbjct: 11 LWSLVVGLGITGKEFCKPGVTVHYPRAEVTPEAAASFRGPIELIGLDKDPAKPKCIACML 70 Query: 69 CEAICPAQAITIESGPRCHD----------------------GTRRTVRYDIDMIKCIYC 106 C + CP+ IT+ P + + D C C Sbjct: 71 CVSACPSNCITVTRAPTPKPTPEELKAMAEAEARGEKPKKPAPPKAPGTWTYDFSLCSLC 130 Query: 107 GLCQEACPVDAIVEGPNFEFATETRQELYYD 137 G C EACPVD+I + R++ +D Sbjct: 131 GSCVEACPVDSIGFSHDIYMVGTKREDFVFD 161 >gi|194702414|gb|ACF85291.1| unknown [Zea mays] Length = 159 Score = 80.9 bits (198), Expect = 5e-14, Method: Composition-based stats. Identities = 42/65 (64%), Positives = 48/65 (73%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 +F +++ LFL E V L L+YFF TINYPFEKG SPRFRGEHALRRY +GEER Sbjct: 64 VFERSINTLFLTEMVRGLMLTLKYFFDRNVTINYPFEKGPLSPRFRGEHALRRYESGEER 123 Query: 63 CIACK 67 CIACK Sbjct: 124 CIACK 128 >gi|126460652|ref|YP_001056930.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Pyrobaculum calidifontis JCM 11548] gi|126250373|gb|ABO09464.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum calidifontis JCM 11548] Length = 132 Score = 80.9 bits (198), Expect = 5e-14, Method: Composition-based stats. Identities = 35/124 (28%), Positives = 55/124 (44%), Gaps = 11/124 (8%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + F + L+ F+ T+ +P E+ P RG N + +CI+C+LCEA+CPA+ Sbjct: 5 IKLFAVALKNLFEKPWTVRWPEERRDYGPAPRGFIV-----NDKSKCISCQLCEAVCPAK 59 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 AI ID +CI CG C +ACP ++ + E ++ Sbjct: 60 AIKFHLEEDGKRYPG------IDWGRCILCGYCVDACPTGSLQHTAHIEITWDSLDTYKK 113 Query: 137 DKER 140 KE Sbjct: 114 PKEM 117 >gi|325121088|gb|ADY80611.1| NADH dehydrogenase I chain I [Acinetobacter calcoaceticus PHEA-2] Length = 119 Score = 80.9 bits (198), Expect = 5e-14, Method: Composition-based stats. Identities = 29/77 (37%), Positives = 42/77 (54%), Gaps = 1/77 (1%) Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 CP I+++ DG + I+ +CI+CG+C+EACP AI P+FE Sbjct: 5 VAVACPVGCISLQKAE-TEDGRWYPEFFRINFSRCIFCGMCEEACPTTAIQLTPDFELGE 63 Query: 129 ETRQELYYDKERLLNNG 145 RQ+L Y+KE LL +G Sbjct: 64 YVRQDLVYEKENLLISG 80 >gi|89074819|ref|ZP_01161273.1| hydrogenase 4 Fe-S subunit [Photobacterium sp. SKA34] gi|89049394|gb|EAR54956.1| hydrogenase 4 Fe-S subunit [Photobacterium sp. SKA34] Length = 182 Score = 80.9 bits (198), Expect = 6e-14, Method: Composition-based stats. Identities = 39/145 (26%), Positives = 61/145 (42%), Gaps = 13/145 (8%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 L+ + T YPF + FRG+ L ++C++C C CPA Sbjct: 1 MFKLLKTVLKT---GEVTTKYPFSPLEVNEDFRGKPEL-----DADQCLSCAACMRACPA 52 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A+ +E+ + R+++ + +CIYCG C+E CP AI NFE A + +LY Sbjct: 53 NALIMETDVKAGT-----RRWELSLARCIYCGRCEEVCPTHAIKLSQNFELAVTNKADLY 107 Query: 136 YDKERLLNNGDRWESEIVRNIVTDS 160 L N E V + + Sbjct: 108 ESATFQLENCCECERPFVARKLLEY 132 >gi|298530779|ref|ZP_07018181.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfonatronospira thiodismutans ASO3-1] gi|298510153|gb|EFI34057.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfonatronospira thiodismutans ASO3-1] Length = 277 Score = 80.5 bits (197), Expect = 6e-14, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 52/168 (30%), Gaps = 34/168 (20%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE- 60 R + L + FF+ T++YP + + +RG L Sbjct: 76 STIRKTIKG--LWSLGVGLKVTSVNFFRPPVTVHYPRQVVPSLEGYRGHVELVPSAEDPG 133 Query: 61 -ERCIACKLCEAICPAQAITIESGPRCHD------------------------------G 89 RCI C C ICP I+I+ + Sbjct: 134 ASRCIGCGACVRICPGACISIKVSHKRPHLAPKKTGKPPDHDQGHFLIPMPKARALPGIA 193 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 R + ++ C CGLC E CP A+ N A TR E YD Sbjct: 194 RRSPTSFKLNYNYCSLCGLCVETCPAGALAFSSNIYLAGYTRNEFKYD 241 >gi|78186623|ref|YP_374666.1| NADH dehydrogenase I, 23 kDa subunit [Chlorobium luteolum DSM 273] gi|78166525|gb|ABB23623.1| NADH dehydrogenase I, 23 kDa subunit [Chlorobium luteolum DSM 273] Length = 215 Score = 80.5 bits (197), Expect = 7e-14, Method: Composition-based stats. Identities = 39/181 (21%), Positives = 57/181 (31%), Gaps = 42/181 (23%) Query: 14 KEFVGAFFLCLRYFFK--------------------AKTTINYPFEKGSTSPRFRGEHAL 53 + L++FF T+ YP E T R Sbjct: 18 TTIATGMGITLKHFFNAVKRKGDAGIDDVDYFGQVDGLVTLQYPREAVPTPSNGR----- 72 Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCH-------------DGTRRTVRYDIDM 100 R N + CI C C CP I +E+ +DID Sbjct: 73 YRLHNDIDDCIGCGQCVRACPVSCIEMETIKVMPEDLAACGKTSGGQQKKFWVPVFDIDT 132 Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDS 160 KC+ CG+C CP + + P +F+ R L Y N R E+E + V ++ Sbjct: 133 AKCMTCGICTTVCPTECLRHTPVADFSDFDRWNLVYH----FGNLTRHEAEAKKRKVEEA 188 Query: 161 P 161 Sbjct: 189 Q 189 >gi|227537461|ref|ZP_03967510.1| possible NADH dehydrogenase i subunit [Sphingobacterium spiritivorum ATCC 33300] gi|227242735|gb|EEI92750.1| possible NADH dehydrogenase i subunit [Sphingobacterium spiritivorum ATCC 33300] Length = 189 Score = 80.5 bits (197), Expect = 7e-14, Method: Composition-based stats. Identities = 37/170 (21%), Positives = 59/170 (34%), Gaps = 36/170 (21%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAK--------------------TTINYPFEK 40 M + + ++ L V L +R+ A+ T+ +P +K Sbjct: 1 MMLIKTTINALLTA--VKGLSLTVRHLIGARRARHELDITKDHYFDKQDGVATVQFPKQK 58 Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR--------- 91 R + + CI C LC CP I I S + Sbjct: 59 MPIPEVARYQLEVEIDD-----CIVCDLCAKACPVDCIDILSIKSPEAIGKTSDGSVKRL 113 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERL 141 ++DIDM KC+YCGLC CP + I ++ +T +L Y + Sbjct: 114 YAEKFDIDMAKCMYCGLCTVVCPTECITMTNQYDRSTSKLTDLIYGFSDM 163 >gi|170289382|ref|YP_001739620.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Thermotoga sp. RQ2] gi|170176885|gb|ACB09937.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermotoga sp. RQ2] Length = 615 Score = 80.5 bits (197), Expect = 7e-14, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 8/125 (6%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFE-KGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 K+F ++ + TI P + + S R+RG H N +CI C C I Sbjct: 9 KDFFAPLK-AWKFLVRKPVTIEVPNKIRREASERYRGFHV-----NDWGKCIGCGTCAKI 62 Query: 73 CPAQAITIESGPRCHDGTRR-TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 CP AIT+ P + R ID +C +C LC + C ++ + +E Sbjct: 63 CPTDAITMVEVPDLTQEDGKLPQRPVIDYGRCSFCALCVDICTTGSLKMTREYIHISEDP 122 Query: 132 QELYY 136 ++ + Sbjct: 123 EDFIF 127 >gi|145298795|ref|YP_001141636.1| hydrogenase-4 component H [Aeromonas salmonicida subsp. salmonicida A449] gi|142851567|gb|ABO89888.1| hydrogenase-4 component H [Aeromonas salmonicida subsp. salmonicida A449] Length = 185 Score = 80.5 bits (197), Expect = 8e-14, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 54/120 (45%), Gaps = 13/120 (10%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + F L+ T YPF + FRG+ + CIAC C CPA Sbjct: 1 MIKLFKTILK---AGTPTAKYPFAPIDVNRDFRGKPKYQADQ-----CIACAACTKACPA 52 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A+ +E + +R++I M +CI+CG C+E CP AI P FE A + +LY Sbjct: 53 NALVMEVDMETGE-----LRWEISMARCIFCGRCEEVCPTHAIALSPEFELAVTNKADLY 107 >gi|15643973|ref|NP_229022.1| putative oxidoreductase [Thermotoga maritima MSB8] gi|4981770|gb|AAD36292.1|AE001778_13 glutamate synthase, beta subunit [Thermotoga maritima MSB8] Length = 618 Score = 80.5 bits (197), Expect = 8e-14, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 51/125 (40%), Gaps = 8/125 (6%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFE-KGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 K+F ++ + TI P + + S R+RG H N +CI C C I Sbjct: 12 KDFFAPLK-AWKFLVRKPVTIEVPNKIRREASERYRGFHV-----NDWGKCIGCGTCAKI 65 Query: 73 CPAQAITIESGPRCHDGTRR-TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 CP AIT+ P + R ID +C +C LC + C ++ + +E Sbjct: 66 CPTDAITMVEVPDLTQEDGKLPQRPVIDYGRCSFCALCVDICTTGSLKMTREYIHISEDP 125 Query: 132 QELYY 136 ++ + Sbjct: 126 EDFIF 130 >gi|90426040|ref|YP_534410.1| formate hydrogenlyase complex iron-sulfur subunit [Rhodopseudomonas palustris BisB18] gi|90108054|gb|ABD90091.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodopseudomonas palustris BisB18] Length = 189 Score = 80.5 bits (197), Expect = 8e-14, Method: Composition-based stats. Identities = 38/116 (32%), Positives = 56/116 (48%), Gaps = 11/116 (9%) Query: 20 FFLCLRYFFK-AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78 F L+ F+ + T+ YPF S FRG+ + E+CIAC C CPA A+ Sbjct: 1 MFKLLKEVFRTGEATVKYPFAPLEISKDFRGKPE-----HNAEQCIACAACTVACPANAL 55 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134 T+E+ + I +C++CG C+E CP AI P+FE A + +L Sbjct: 56 TMETDLVAGT-----RTWSISYGRCVFCGRCEEVCPTQAIKLTPDFELAVANKADL 106 >gi|167752195|ref|ZP_02424322.1| hypothetical protein ALIPUT_00437 [Alistipes putredinis DSM 17216] gi|167660436|gb|EDS04566.1| hypothetical protein ALIPUT_00437 [Alistipes putredinis DSM 17216] Length = 145 Score = 80.1 bits (196), Expect = 8e-14, Method: Composition-based stats. Identities = 40/143 (27%), Positives = 61/143 (42%), Gaps = 8/143 (5%) Query: 6 CNVSFLF--LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFR--GEHALRRYPNGEE 61 + LF ++ + + + F K T YP + + R G + G+ Sbjct: 3 NYIQGLFHGIRTLLTGLKVTGKEFVTPKITEQYPENRATLKMNERFCGTLTMPHDAEGKN 62 Query: 62 RCIACKLCEAICPAQAIT----IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 +C+AC LC+A CP I + RR V+Y+ D+ C++C LC ACP DA Sbjct: 63 KCVACGLCQAACPNGTIKITTETVTDEETGKPRRRLVKYEYDLGACMFCHLCVNACPHDA 122 Query: 118 IVEGPNFEFATETRQELYYDKER 140 I FE A TR +L + Sbjct: 123 IRFDTAFEHAVYTRDKLVKTLNK 145 >gi|300727163|ref|ZP_07060581.1| NADH-ubiquinone oxidoreductase, Nqo9 subunit (nqo9) [Prevotella bryantii B14] gi|299775549|gb|EFI72141.1| NADH-ubiquinone oxidoreductase, Nqo9 subunit (nqo9) [Prevotella bryantii B14] Length = 193 Score = 80.1 bits (196), Expect = 8e-14, Method: Composition-based stats. Identities = 37/150 (24%), Positives = 60/150 (40%), Gaps = 22/150 (14%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKG---STSPRFRGEHALRRYPN----------- 58 +K + L+ +F K+T YP + S R RG +R + Sbjct: 16 MKTLATGLKITLKEYFTPKSTEQYPENRLTTLHVSKRHRGRLVFKRVTDADLQDPKLQAR 75 Query: 59 ----GEERCIACKLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 G+ +C AC +CE CP + I ++ P + Y D+ C++C LC Sbjct: 76 GLKVGDYKCTACTMCEKACPNETIKITAHMQEDPETGKKKKVLDDYLYDLGDCMFCQLCV 135 Query: 111 EACPVDAIVEGPNFEFATETRQELYYDKER 140 AC DAI +FE + R +L ++ Sbjct: 136 NACNFDAIEFTNDFENSVFDRSKLALHLDK 165 >gi|119356794|ref|YP_911438.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Chlorobium phaeobacteroides DSM 266] gi|119354143|gb|ABL65014.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Chlorobium phaeobacteroides DSM 266] Length = 228 Score = 80.1 bits (196), Expect = 9e-14, Method: Composition-based stats. Identities = 46/192 (23%), Positives = 65/192 (33%), Gaps = 43/192 (22%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFF---KAK-----------------TTINYPFEK 40 M + N+ + L++FF K K T+ YP E Sbjct: 1 MSEYFRNIKTGA-STIATGMGITLQHFFNAVKRKGDAGVGDSNYFGQVDGLVTLQYPREA 59 Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH------------- 87 T R N + CI C CE CP ITIE+ Sbjct: 60 IPTPANGRYRLE-----NNIDDCIGCAQCERACPIGCITIETIKVTADDLGVCGKTSGGQ 114 Query: 88 DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDR 147 +DID KC+ CGLC CP + ++ P +F+ RQ L Y N R Sbjct: 115 QKKFWLPVFDIDTAKCMTCGLCTVVCPTECLIHSPVSDFSEFDRQNLVYH----FGNLTR 170 Query: 148 WESEIVRNIVTD 159 E+E + + + Sbjct: 171 LEAEAKKRKLQE 182 >gi|297526160|ref|YP_003668184.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Staphylothermus hellenicus DSM 12710] gi|297255076|gb|ADI31285.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Staphylothermus hellenicus DSM 12710] Length = 154 Score = 80.1 bits (196), Expect = 9e-14, Method: Composition-based stats. Identities = 42/129 (32%), Positives = 58/129 (44%), Gaps = 8/129 (6%) Query: 16 FVGAFFLCLRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP 74 + A L +Y FK T YP+ E+ + + R H L RCI C+ C+ CP Sbjct: 2 VLKAVLLGFKYLFKKPYTRMYPYKEEAYVTSKTRARHILYMD-----RCIGCRACQLACP 56 Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP--NFEFATETRQ 132 A AI + + R+ + ID +C YCGLC EACPV+A+ TE + Sbjct: 57 ADAIKMYHVEGDYPKNRKKIFPGIDYSRCTYCGLCVEACPVNALAMTNYTMEHLITEDKA 116 Query: 133 ELYYDKERL 141 Y E L Sbjct: 117 TTLYTPEML 125 >gi|126465554|ref|YP_001040663.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Staphylothermus marinus F1] gi|126014377|gb|ABN69755.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Staphylothermus marinus F1] Length = 153 Score = 80.1 bits (196), Expect = 9e-14, Method: Composition-based stats. Identities = 42/129 (32%), Positives = 58/129 (44%), Gaps = 8/129 (6%) Query: 16 FVGAFFLCLRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP 74 + A L +Y FK T YP+ E+ + + R H L RCI C+ C+ CP Sbjct: 2 VLKAVLLGFKYLFKKPYTRMYPYKEEAYVTSKTRARHILYMD-----RCIGCRACQLACP 56 Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP--NFEFATETRQ 132 A AI + + R+ + ID +C YCGLC EACPV+A+ TE + Sbjct: 57 ADAIKMYHVEGDYPKNRKKIFPGIDYSRCTYCGLCVEACPVNALAMTNYTMEHLITEDKA 116 Query: 133 ELYYDKERL 141 Y E L Sbjct: 117 TTLYTPEML 125 >gi|189346378|ref|YP_001942907.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chlorobium limicola DSM 245] gi|189340525|gb|ACD89928.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chlorobium limicola DSM 245] Length = 204 Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 42/189 (22%), Positives = 61/189 (32%), Gaps = 43/189 (22%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFK--------------------AKTTINYPFEK 40 M + N+ + + L++FF T+ YP E Sbjct: 1 MSEYFSNIKTGAVT-IATGMSITLKHFFNAIHRKGDAGIDDADYFRQVDGLCTLQYPREA 59 Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH------------- 87 R N E CI C CE CP I IE+ Sbjct: 60 VPVPLNARYRL-----YNDIEDCIGCGQCERACPVTCIAIETIKVVPEDLAVCGKTSGGQ 114 Query: 88 DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDR 147 +DID+ KC+ CG+C CP + +V P +F+ RQ + Y N R Sbjct: 115 QKKFWVPVFDIDVAKCMTCGICVSVCPTECLVHTPVSDFSEFDRQNMIYH----FGNLSR 170 Query: 148 WESEIVRNI 156 E+E + Sbjct: 171 LEAEAKKRK 179 >gi|212223633|ref|YP_002306869.1| NADH dehydrogenase subunit I [Thermococcus onnurineus NA1] gi|212008590|gb|ACJ15972.1| membrane bound hydrogenase [Thermococcus onnurineus NA1] Length = 232 Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 34/113 (30%), Positives = 53/113 (46%), Gaps = 6/113 (5%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80 ++ L+Y FK TI P+E+ + +RG H L ++C+ C C ICPA+AI + Sbjct: 23 WMGLKYLFKKPVTIKIPYERVQIAKDYRGFHTL-----DWKKCVGCNFCGQICPARAIEM 77 Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 +R ID +C +C C + CP A+ N+ TE + E Sbjct: 78 TWIEVDGKMEKRP-HPKIDYGRCTFCEFCVDVCPPGALGFIENYILTTEWKDE 129 >gi|294634802|ref|ZP_06713327.1| formate hydrogenlyase subunit 6 [Edwardsiella tarda ATCC 23685] gi|291091793|gb|EFE24354.1| formate hydrogenlyase subunit 6 [Edwardsiella tarda ATCC 23685] Length = 185 Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 38/145 (26%), Positives = 60/145 (41%), Gaps = 13/145 (8%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + LR+ T+ YP P FRG+ +CIAC C A CPA Sbjct: 1 MLKLLKTALRH---RHATVAYPARPLDVDPNFRGKP-----QYDARQCIACGACTAACPA 52 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A+T+E+ R+ +++ +CI+C C+E CP AIV P FE A +++L Sbjct: 53 NALTMENDVANGL-----RRWSLNLGRCIFCARCEEVCPTAAIVLSPEFELAVWRKEDLQ 107 Query: 136 YDKERLLNNGDRWESEIVRNIVTDS 160 + + + + D Sbjct: 108 QRADFAICHCVECGAPYAAQKEIDY 132 >gi|325578546|ref|ZP_08148646.1| formate hydrogenlyase complex iron-sulfur protein [Haemophilus parainfluenzae ATCC 33392] gi|325159782|gb|EGC71912.1| formate hydrogenlyase complex iron-sulfur protein [Haemophilus parainfluenzae ATCC 33392] Length = 215 Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 37/117 (31%), Positives = 54/117 (46%), Gaps = 11/117 (9%) Query: 20 FFLCLRYFFK-AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78 F L+ FK T YPF+ FRG+ L CI C C CPA A+ Sbjct: 1 MFKLLKTVFKAGDVTTKYPFKPYEVDEDFRGKPELNSDQ-----CIVCAACTIACPANAL 55 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 T+ + P D + + + +CI+CG C+E CP AI +FE + +Q+L+ Sbjct: 56 TMRTDPVTGD-----RTWSLFLGRCIFCGRCEEVCPTKAIRLSQDFELSVTNKQDLF 107 >gi|117617630|ref|YP_857017.1| hydrogenase-4 component H [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559037|gb|ABK35985.1| hydrogenase-4 component H [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 185 Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 53/120 (44%), Gaps = 13/120 (10%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + F L+ T YPF + FRG+ + CIAC C CPA Sbjct: 1 MIKLFKTILK---AGTPTAKYPFAPYEVNRDFRGKPKYQADQ-----CIACAACTKACPA 52 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A+ +E + R++I M +CI+CG C+E CP AI P FE A + +LY Sbjct: 53 NALVMEVDMETGE-----RRWEISMARCIFCGRCEEVCPTRAIALSPEFELAVTNKADLY 107 >gi|157370669|ref|YP_001478658.1| formate hydrogenlyase complex iron-sulfur subunit [Serratia proteamaculans 568] gi|157322433|gb|ABV41530.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Serratia proteamaculans 568] Length = 181 Score = 79.8 bits (195), Expect = 1e-13, Method: Composition-based stats. Identities = 36/142 (25%), Positives = 60/142 (42%), Gaps = 10/142 (7%) Query: 19 AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78 L + T+ YP + P FRG+ ++CIAC C CP+ A+ Sbjct: 1 MLKLIKKVLKTGPATVAYPSQPLVVDPNFRGKPE-----YNPQQCIACGACANACPSNAL 55 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 ++ + TR TVR+ + + +CI+C C+E CP AI FE A +++LY Sbjct: 56 SMTTDL-----TRGTVRWQLFLGRCIFCARCEEVCPTAAIRLSQQFELAVWRKEDLYEQA 110 Query: 139 ERLLNNGDRWESEIVRNIVTDS 160 + + + + D Sbjct: 111 DFAICHCRQCGKAYASQKEIDY 132 >gi|91773268|ref|YP_565960.1| F420H2 dehydrogenase subunit I [Methanococcoides burtonii DSM 6242] gi|91712283|gb|ABE52210.1| F420H2 dehydrogenase subunit I [Methanococcoides burtonii DSM 6242] Length = 135 Score = 79.4 bits (194), Expect = 1e-13, Method: Composition-based stats. Identities = 36/128 (28%), Positives = 52/128 (40%), Gaps = 7/128 (5%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + ++ +K T YP S RFRG L + +CI C +C CP Sbjct: 2 VLKNIVRAVKNIYKPPITRRYPEVPTELSDRFRGLQKL-----DKSKCIGCGICANTCPN 56 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT--ETRQE 133 AI I D + ID+ C++CGLC + CP DA+ + T +E Sbjct: 57 SAIKIVRARVNKDSDKTRWFPAIDISHCMFCGLCIDQCPQDALSSTKVYTTGVIRLTHEE 116 Query: 134 LYYDKERL 141 L Y + L Sbjct: 117 LLYTPDML 124 >gi|330829824|ref|YP_004392776.1| hydrogenase-4 component H [Aeromonas veronii B565] gi|328804960|gb|AEB50159.1| Hydrogenase-4 component H [Aeromonas veronii B565] Length = 185 Score = 79.4 bits (194), Expect = 1e-13, Method: Composition-based stats. Identities = 38/120 (31%), Positives = 53/120 (44%), Gaps = 13/120 (10%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + F L+ T YPF + FRG+ + CIAC C CPA Sbjct: 1 MIKLFKTILK---AGTPTAKYPFAPIDVNRDFRGKPKYQADQ-----CIACAACTKACPA 52 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A+ +E + R++I M +CI+CG C+E CP AI P FE A + +LY Sbjct: 53 NALVMEVDMETGE-----RRWEISMARCIFCGRCEEVCPTRAIALSPEFELAVTNKADLY 107 >gi|261345090|ref|ZP_05972734.1| hydrogenase-4 component H [Providencia rustigianii DSM 4541] gi|282566774|gb|EFB72309.1| hydrogenase-4 component H [Providencia rustigianii DSM 4541] Length = 183 Score = 79.4 bits (194), Expect = 1e-13, Method: Composition-based stats. Identities = 38/141 (26%), Positives = 59/141 (41%), Gaps = 12/141 (8%) Query: 20 FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79 F LR T+ YPF+ + FRG+ ++CIAC C + CPA A+T Sbjct: 4 LFKTLRN--AGTATVKYPFKPLEVAHGFRGKPE-----YDPQQCIACGACISACPANALT 56 Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139 +E+ + R+ + + +CIYC C+E CP AI FE A + +LY Sbjct: 57 METDLESGE-----RRWQLFLGRCIYCARCEEVCPTRAIHLTEEFETAVMNKADLYMKGT 111 Query: 140 RLLNNGDRWESEIVRNIVTDS 160 L + + + Sbjct: 112 FRLQHCRQCGEAFAPKKSVEY 132 >gi|139437056|ref|ZP_01771216.1| Hypothetical protein COLAER_00191 [Collinsella aerofaciens ATCC 25986] gi|133776703|gb|EBA40523.1| Hypothetical protein COLAER_00191 [Collinsella aerofaciens ATCC 25986] Length = 238 Score = 79.4 bits (194), Expect = 1e-13, Method: Composition-based stats. Identities = 38/129 (29%), Positives = 57/129 (44%), Gaps = 10/129 (7%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T+ YPF T+ RG+ + E CIAC C CPA AI +++ Sbjct: 14 ATVKYPFAPFPTNKDMRGKPE-----HNAELCIACGACGVACPADAIRMDTDLAADT--- 65 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 + + ID +CI+CG C+EACP++AI FE A ++ +L L + R Sbjct: 66 --ITWSIDYGRCIFCGRCEEACPMEAIKLTEEFELAVMSKDDLTSKSVYTLEHCSRCGKP 123 Query: 152 IVRNIVTDS 160 + D Sbjct: 124 FAPHKEIDY 132 >gi|212710434|ref|ZP_03318562.1| hypothetical protein PROVALCAL_01496 [Providencia alcalifaciens DSM 30120] gi|212686854|gb|EEB46382.1| hypothetical protein PROVALCAL_01496 [Providencia alcalifaciens DSM 30120] Length = 183 Score = 79.4 bits (194), Expect = 2e-13, Method: Composition-based stats. Identities = 38/141 (26%), Positives = 59/141 (41%), Gaps = 12/141 (8%) Query: 20 FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79 F LR T+ YPF+ + FRG+ ++CIAC C + CPA A+T Sbjct: 4 LFKTLRN--AGTATVKYPFKPLEVAHGFRGKPE-----YDPQQCIACGACISACPANALT 56 Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139 +E+ + R+ + + +CIYC C+E CP AI FE A + +LY Sbjct: 57 METDLESGE-----RRWQLFLGRCIYCARCEEVCPTRAIHLTEEFETAVMNKADLYMKGT 111 Query: 140 RLLNNGDRWESEIVRNIVTDS 160 L + + + Sbjct: 112 FRLQHCRQCGEAFAPKKSVEY 132 >gi|226327310|ref|ZP_03802828.1| hypothetical protein PROPEN_01177 [Proteus penneri ATCC 35198] gi|225204528|gb|EEG86882.1| hypothetical protein PROPEN_01177 [Proteus penneri ATCC 35198] Length = 184 Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 40/145 (27%), Positives = 58/145 (40%), Gaps = 13/145 (8%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + F ++ + T YPF+ FRG+ E+CI C C A CPA Sbjct: 1 MLKLFKTIIKT---GEATTKYPFKPLDLPDGFRGKPE-----YDAEQCIVCGACTAACPA 52 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A+T+E+ + + + + +CIYCG C+E CP AIV FE A + +LY Sbjct: 53 NALTMETNLETGE-----RHWQLFIGRCIYCGRCEEVCPTRAIVLSDMFETAVTKKSDLY 107 Query: 136 YDKERLLNNGDRWESEIVRNIVTDS 160 L N D Sbjct: 108 IKGTFKLLNCRECHQPFTPRKSVDY 132 >gi|242238722|ref|YP_002986903.1| hydrogenase 4 subunit H [Dickeya dadantii Ech703] gi|242130779|gb|ACS85081.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya dadantii Ech703] Length = 189 Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 13/120 (10%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + F L+ +T+ YPF FRG+ +CI C C CPA Sbjct: 1 MLKLFKTILK---AGNSTVKYPFAPLEVPTGFRGKPE-----YDPAQCIGCAACTMACPA 52 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A+T+++ + + + + +CI+CG C+E CP AIV FE A ++ +LY Sbjct: 53 NALTMDNDINNGE-----RIWQLFLGRCIFCGRCEEVCPTRAIVLSQEFEMAVASKADLY 107 >gi|48478477|ref|YP_024183.1| NADH dehydrogenase subunit I [Picrophilus torridus DSM 9790] gi|48431125|gb|AAT43990.1| NADH-quinone oxidoreductase chain I [Picrophilus torridus DSM 9790] Length = 170 Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 44/142 (30%), Positives = 57/142 (40%), Gaps = 23/142 (16%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-- 74 + + ++ FK TI YP EKG RFR L E CI C LC+ ICP Sbjct: 26 IQTMYHVGKFIFKKPVTIQYPEEKGDIPERFRYRIFL-----SPESCIGCTLCQQICPNH 80 Query: 75 ---------------AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 A AI G R + +R + D++ C C C+E CP +AI Sbjct: 81 SIKMEVWDLSSQNTGAHAIKTARGVRENAQNKRHLYPDVNFGTCTVCRNCEEICPTNAIY 140 Query: 120 EGPNFEFATETRQELYYDKERL 141 FE A TR Y + L Sbjct: 141 LTHEFETA-RTRNSFTYSPQEL 161 >gi|301156408|emb|CBW15879.1| formate hydrogenlyase complex iron-sulfur protein [Haemophilus parainfluenzae T3T1] Length = 215 Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 11/117 (9%) Query: 20 FFLCLRYFFK-AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78 F L+ FK T YPF+ FRG+ L CI C C CPA A+ Sbjct: 1 MFKLLKTVFKAGDVTTKYPFKPYEVDEDFRGKPELNSDQ-----CIVCAACTIACPANAL 55 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 T+ + P + + + + +CI+CG C+E CP AI +FE + +Q+L+ Sbjct: 56 TMRTDPITGE-----RTWSLFLGRCIFCGRCEEVCPTKAIRLSQDFELSVTNKQDLF 107 >gi|295401604|ref|ZP_06811572.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacillus thermoglucosidasius C56-YS93] gi|312110880|ref|YP_003989196.1| formate hydrogenlyase complex iron-sulfur subunit [Geobacillus sp. Y4.1MC1] gi|294976371|gb|EFG51981.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacillus thermoglucosidasius C56-YS93] gi|311215981|gb|ADP74585.1| formate hydrogenlyase complex iron-sulfur subunit [Geobacillus sp. Y4.1MC1] Length = 172 Score = 79.0 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 40/142 (28%), Positives = 59/142 (41%), Gaps = 10/142 (7%) Query: 19 AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78 L + + T+ YPF+ +P FRG+ +CIAC C CP+ AI Sbjct: 1 MLKLLKKALQVGEATVKYPFKPLEVAPGFRGKPV-----YDFSQCIACGACATACPSNAI 55 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 T+E + R V ++I+ +CI+CG C E CP AI FE A +++LY Sbjct: 56 TMEHDFK-----RGIVSWNINYGRCIFCGRCDEVCPTGAIALSEEFELAASRKEDLYCRA 110 Query: 139 ERLLNNGDRWESEIVRNIVTDS 160 E L + Sbjct: 111 EIQLCKCSSCGKHFAPYRELEY 132 >gi|72151767|ref|XP_780257.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase), partial [Strongylocentrotus purpuratus] gi|115659328|ref|XP_001197681.1| PREDICTED: similar to NADH dehydrogenase (ubiquinone) Fe-S protein 8, 23kDa (NADH-coenzyme Q reductase), partial [Strongylocentrotus purpuratus] Length = 87 Score = 78.6 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 48/74 (64%), Positives = 52/74 (70%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 I S LF E + L Y F+ TINYPFEKG SPRFRGEHALRRYP+GEER Sbjct: 14 ITDRAASTLFFTELTRGLAMTLSYLFREPATINYPFEKGPLSPRFRGEHALRRYPSGEER 73 Query: 63 CIACKLCEAICPAQ 76 CIACKLCEA+CPAQ Sbjct: 74 CIACKLCEAVCPAQ 87 >gi|222100328|ref|YP_002534896.1| Glutamate synthase, beta subunit [Thermotoga neapolitana DSM 4359] gi|221572718|gb|ACM23530.1| Glutamate synthase, beta subunit [Thermotoga neapolitana DSM 4359] Length = 618 Score = 78.6 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 8/125 (6%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFE-KGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 K+F ++ + TI P + K S R+RG H N +CI C C I Sbjct: 12 KDFFAPLK-AWKFLARKPVTIEVPNKTKREASERYRGFHV-----NDWGKCIGCGTCSKI 65 Query: 73 CPAQAITIESGPRCHDGTRR-TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 CP AIT+ P + R ID +C +C LC + C ++ + +E Sbjct: 66 CPTDAITMVEVPDLTQEDGKLPQRPVIDYGRCSFCALCVDICTTGSLQMTREYIHISEDP 125 Query: 132 QELYY 136 ++ + Sbjct: 126 EDFVF 130 >gi|145592470|ref|YP_001154472.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Pyrobaculum arsenaticum DSM 13514] gi|145284238|gb|ABP51820.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum arsenaticum DSM 13514] Length = 132 Score = 78.6 bits (192), Expect = 3e-13, Method: Composition-based stats. Identities = 36/127 (28%), Positives = 55/127 (43%), Gaps = 13/127 (10%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + F + ++ F+ T+ +P E+ R RG N +CI+C+LCEA+CPA+ Sbjct: 5 LKLFVVAVKNLFERPWTVRWPEERRDYGDRVRGFIV-----NDRSKCISCQLCEAVCPAK 59 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 AI ID +CI CG C +ACP ++ + E R Y Sbjct: 60 AIKFHLEENGKRYPG------IDWGRCILCGYCVDACPTGSLQHTTDVEI--TWRDLNTY 111 Query: 137 DKERLLN 143 K R + Sbjct: 112 RKPREME 118 >gi|322831877|ref|YP_004211904.1| formate hydrogenlyase complex iron-sulfur subunit [Rahnella sp. Y9602] gi|321167078|gb|ADW72777.1| formate hydrogenlyase complex iron-sulfur subunit [Rahnella sp. Y9602] Length = 185 Score = 78.2 bits (191), Expect = 3e-13, Method: Composition-based stats. Identities = 32/141 (22%), Positives = 57/141 (40%), Gaps = 10/141 (7%) Query: 19 AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78 L + T+ YPF+ + FRG+ ++CIAC C CP+ A+ Sbjct: 1 MLKLIKKVLKTGTATVAYPFKPLDLAANFRGKP-----QYTAQQCIACGACANACPSNAL 55 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 T+ + +R+ + + +CI+C C+E CP AI FE A +++L+ Sbjct: 56 TMTTAEDGET-----LRWQLFLGRCIFCARCEEVCPTAAIRLSQEFELAVWRKEDLFETA 110 Query: 139 ERLLNNGDRWESEIVRNIVTD 159 + + + D Sbjct: 111 DFPICHCRACGKPYAVQKEID 131 >gi|251792878|ref|YP_003007604.1| hydrogenase-4 subunit H [Aggregatibacter aphrophilus NJ8700] gi|247534271|gb|ACS97517.1| hydrogenase-4 component H [Aggregatibacter aphrophilus NJ8700] Length = 215 Score = 78.2 bits (191), Expect = 3e-13, Method: Composition-based stats. Identities = 36/117 (30%), Positives = 54/117 (46%), Gaps = 11/117 (9%) Query: 20 FFLCLRYFFK-AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78 F L+ FK T YPF+ FRG+ L CI C C CPA A+ Sbjct: 1 MFKLLKTVFKTGDATTKYPFKPYEVDEDFRGKPELNSDQ-----CIVCAACTMTCPANAL 55 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 T+ + P + + + + +CI+CG C+E CP AI +FE + +Q+L+ Sbjct: 56 TMRTDPVTGE-----RTWSLFLGRCIFCGRCEEVCPTKAIRLTQDFELSVANKQDLF 107 >gi|269140239|ref|YP_003296940.1| hydrogenase 4 subunit H [Edwardsiella tarda EIB202] gi|267985900|gb|ACY85729.1| hydrogenase 4 subunit H [Edwardsiella tarda EIB202] gi|304560069|gb|ADM42733.1| Formate hydrogenlyase complex 3 iron-sulfur protein; Formate hydrogenlyase subunit 6; Ni,Fe-hydrogenase III medium subunit [Edwardsiella tarda FL6-60] Length = 185 Score = 78.2 bits (191), Expect = 3e-13, Method: Composition-based stats. Identities = 36/145 (24%), Positives = 58/145 (40%), Gaps = 13/145 (8%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + LR+ T+ YP FRG+ ++CIAC C A CPA Sbjct: 1 MLKLLKTALRH---RHATVAYPARPLDVDANFRGKP-----QYDAQQCIACGACTAACPA 52 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A+T+++ + +++ +CI+C C+E CP AIV P FE A +++L Sbjct: 53 NALTMQTDAASGV-----RTWALNLGRCIFCARCEEVCPTAAIVLSPEFELAVWRKEDLQ 107 Query: 136 YDKERLLNNGDRWESEIVRNIVTDS 160 E + + D Sbjct: 108 QRAEFRVCRCIECGAPYAAQKEIDY 132 >gi|255513523|gb|EET89789.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Candidatus Micrarchaeum acidiphilum ARMAN-2] Length = 121 Score = 78.2 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 7/126 (5%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 V + K +T+ +P + + + +RG H L + CI+C C ICP Sbjct: 2 IVKPLINVAKEVLKPPSTLEFPENRENLTDNYRGIHKL-----DMKTCISCAACARICPN 56 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 Q I + GT++ I++ +C++C LC+E CP ++ ++ F R++ Sbjct: 57 QTIDMVDTETPDKGTKKMPL--INLERCLFCALCEEVCPTKCLILTKDYSFEAYDRRDYI 114 Query: 136 YDKERL 141 E L Sbjct: 115 KRPEDL 120 >gi|197286368|ref|YP_002152240.1| hydrogenase 4 subunit H [Proteus mirabilis HI4320] gi|227357422|ref|ZP_03841776.1| formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Proteus mirabilis ATCC 29906] gi|194683855|emb|CAR44986.1| hydrogenase-4 component H [Proteus mirabilis HI4320] gi|227162380|gb|EEI47380.1| formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Proteus mirabilis ATCC 29906] Length = 184 Score = 77.8 bits (190), Expect = 4e-13, Method: Composition-based stats. Identities = 35/105 (33%), Positives = 50/105 (47%), Gaps = 10/105 (9%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T YPF+ FRG+ E+CI C C + CPA A+T+E+ + Sbjct: 14 ATTKYPFKPLELPDGFRGKPE-----YSPEQCIVCGACTSACPANALTMETNLETGE--- 65 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 + + + +CIYCG C+E CP AIV FE A + +LY Sbjct: 66 --RHWQLFIGRCIYCGRCEEVCPTRAIVLSDMFETAVTQKSDLYI 108 >gi|294496244|ref|YP_003542737.1| F420H2 dehydrogenase subunit I [Methanohalophilus mahii DSM 5219] gi|292667243|gb|ADE37092.1| F420H2 dehydrogenase subunit I [Methanohalophilus mahii DSM 5219] Length = 137 Score = 77.8 bits (190), Expect = 4e-13, Method: Composition-based stats. Identities = 35/128 (27%), Positives = 55/128 (42%), Gaps = 7/128 (5%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + L+ K + T YP + RFRG L + +CI C +C CP Sbjct: 2 VLKNITRALKNIRKPRVTRMYPEIRSELPERFRGLQKL-----DKSKCIGCGICANTCPN 56 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE--FATETRQE 133 AI I D T+ +ID+ C++CGLC + CP DA+ + T ++ Sbjct: 57 CAIKIVRARVSKDSTKTRWFPEIDVGHCLFCGLCIDQCPQDALSSSKIYTDGIITWKHED 116 Query: 134 LYYDKERL 141 L + ++L Sbjct: 117 LLFTPDQL 124 >gi|119871841|ref|YP_929848.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Pyrobaculum islandicum DSM 4184] gi|119673249|gb|ABL87505.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum islandicum DSM 4184] Length = 132 Score = 77.8 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 11/114 (9%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + F + L+Y F+ T+ +P E+ R RG N +CI+C+LCEA+CPA+ Sbjct: 5 LKMFGVALKYVFQRPITVRWPEERRDYGDRIRGFII-----NDRTKCISCQLCEAVCPAK 59 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 AI ID +CI CG C +ACP ++ N E Sbjct: 60 AIRFHLEADGKRYPG------IDWGRCILCGYCVDACPTGSLRHINNTEIVWTD 107 >gi|312885980|ref|ZP_07745608.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Mucilaginibacter paludis DSM 18603] gi|311301517|gb|EFQ78558.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Mucilaginibacter paludis DSM 18603] Length = 197 Score = 77.8 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 40/156 (25%), Positives = 55/156 (35%), Gaps = 36/156 (23%) Query: 17 VGAFFLCLRYFF----------------------KAKTTINYPFEKGSTSPRFRGEHALR 54 FL LR+FF K TI YP +K R Sbjct: 13 WVGLFLTLRHFFASNKQRVVSSVKSDNYFEEQDGKGTNTIQYPQQKLPVPEVGR-----Y 67 Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCH---------DGTRRTVRYDIDMIKCIY 105 + + CI C LC +CP ITI+S ++DIDM KC+Y Sbjct: 68 QLDVEMDDCIVCDLCAKVCPVDCITIDSIKATEAIGQTSDGTTKRLYAAKFDIDMAKCMY 127 Query: 106 CGLCQEACPVDAIVEGPNFEFATETRQELYYDKERL 141 CGLC CP + I ++ + + L Y + Sbjct: 128 CGLCTVVCPTECITMTNQYDKSVQDLNLLTYKFSDM 163 >gi|271501146|ref|YP_003334171.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein [Dickeya dadantii Ech586] gi|270344701|gb|ACZ77466.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya dadantii Ech586] Length = 189 Score = 77.8 bits (190), Expect = 5e-13, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 13/120 (10%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + F L+ +T+ YPF + FRG+ E+CI C C CPA Sbjct: 1 MIKLFKTILK---AGNSTVKYPFAPLAVPTGFRGKPE-----YDPEQCIGCAACTMACPA 52 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A+T+ + + + + +CI+CG C+E CP AIV FE A + +LY Sbjct: 53 NALTMANDLDSGT-----RTWQLFLGRCIFCGRCEEVCPTRAIVLSQEFEMAVANKADLY 107 >gi|288961304|ref|YP_003451643.1| formate hydrogenlyase complex iron-sulfur subunit [Azospirillum sp. B510] gi|288913612|dbj|BAI75099.1| formate hydrogenlyase complex iron-sulfur subunit [Azospirillum sp. B510] Length = 186 Score = 77.4 bits (189), Expect = 5e-13, Method: Composition-based stats. Identities = 38/145 (26%), Positives = 59/145 (40%), Gaps = 11/145 (7%) Query: 20 FFLCLRYFFK-AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78 L+ F+ + T+ YPF FRG+ + E CIAC C CPA AI Sbjct: 1 MLKLLKEIFRTGEATVKYPFAPMPVCKDFRGKPEHK-----AEDCIACAACTVACPANAI 55 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 +E+ + + I+ +C++CG C+E+CP AI +FE A ++ +L Sbjct: 56 AMETDTTAGN-----RVWSINYGRCVFCGRCEESCPTGAIRLSDDFELAVGSKADLTRKA 110 Query: 139 ERLLNNGDRWESEIVRNIVTDSPYR 163 L + D R Sbjct: 111 VFTLADCACCGKPFAPAKEVDYVAR 135 >gi|307130312|ref|YP_003882328.1| hydrogenase 4, Fe-S subunit [Dickeya dadantii 3937] gi|306527841|gb|ADM97771.1| hydrogenase 4, Fe-S subunit [Dickeya dadantii 3937] Length = 189 Score = 77.4 bits (189), Expect = 6e-13, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 13/120 (10%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + F L+ +T+ YPF + FRG+ +CI C C CPA Sbjct: 1 MIKLFKTILK---AGNSTVKYPFAPLAVPAGFRGKPE-----YDPAQCIGCAACTMACPA 52 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A+T+ + + + + +CI+CG C+E CP AIV FE A ++ +LY Sbjct: 53 NALTMANDLDNGT-----RTWQLFLGRCIFCGRCEEVCPTRAIVLSQEFEMAVASKADLY 107 >gi|149909813|ref|ZP_01898464.1| putative oxidoreductase [Moritella sp. PE36] gi|149807145|gb|EDM67101.1| putative oxidoreductase [Moritella sp. PE36] Length = 134 Score = 77.4 bits (189), Expect = 6e-13, Method: Composition-based stats. Identities = 39/111 (35%), Positives = 57/111 (51%), Gaps = 5/111 (4%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 ++ G+ C+ C+LC ICP IT+ G RR +DID+ +C+YCGLC++A Sbjct: 1 MKTNDEGDVNCVGCELCAKICPCDCITVVPYED-EKGNRRPKVFDIDLARCLYCGLCEDA 59 Query: 113 CPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWES----EIVRNIVTD 159 CP DAI G +E AT T + L E L+ + E I ++ D Sbjct: 60 CPADAIKLGQEYEVATTTTEALVVHLEDLIAAPRKAEEGAGTVIPASLAKD 110 >gi|218883727|ref|YP_002428109.1| NADH-ubiquinone oxidoreductase, subunit I [Desulfurococcus kamchatkensis 1221n] gi|218765343|gb|ACL10742.1| NADH-ubiquinone oxidoreductase, subunit I [Desulfurococcus kamchatkensis 1221n] Length = 133 Score = 77.4 bits (189), Expect = 6e-13, Method: Composition-based stats. Identities = 34/116 (29%), Positives = 43/116 (37%), Gaps = 8/116 (6%) Query: 18 GAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA 77 L L+ TI YP E P +RG H +C C LC CPA A Sbjct: 5 KILNLVLKNLASKPATIQYPKEPTPVEPDYRGRH-----YADLGKCTGCSLCSIECPADA 59 Query: 78 ITIESGP---RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 I + P R + ID KC+YC C CP +A + + A T Sbjct: 60 IKMTPIPSGYDVPKSNPRKIYPLIDYGKCVYCYRCITVCPFNAYISTNEYRLADTT 115 >gi|110598462|ref|ZP_01386733.1| 4Fe-4S ferredoxin, iron-sulfur binding [Chlorobium ferrooxidans DSM 13031] gi|110339912|gb|EAT58416.1| 4Fe-4S ferredoxin, iron-sulfur binding [Chlorobium ferrooxidans DSM 13031] Length = 207 Score = 77.4 bits (189), Expect = 6e-13, Method: Composition-based stats. Identities = 45/170 (26%), Positives = 58/170 (34%), Gaps = 39/170 (22%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKT--------------------TINYPFEK 40 M + N+ + + L++FF A T+ YP E Sbjct: 1 MSEYFSNIKTGAVT-IATGLGITLKHFFNATKRKGDAGVDDVDYFRQVDGLCTLQYPREV 59 Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH------------- 87 T R R N E CI C CE CP ITIE+ Sbjct: 60 IPTPLNGR-----YRLYNNIEDCIGCGQCERACPISCITIETIKVAADDLAVCGKTSDGQ 114 Query: 88 DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 +DID KC+ CGLC CP D +V P +F+ RQ L Y Sbjct: 115 QKKFWVPVFDIDTAKCMTCGLCTNVCPTDCLVHTPVSDFSQFDRQNLLYH 164 >gi|194333680|ref|YP_002015540.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Prosthecochloris aestuarii DSM 271] gi|194311498|gb|ACF45893.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Prosthecochloris aestuarii DSM 271] Length = 206 Score = 77.1 bits (188), Expect = 7e-13, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 50/155 (32%), Gaps = 38/155 (24%) Query: 16 FVGAFFLCLRYFFK--------------------AKTTINYPFEKGSTSPRFRGEHALRR 55 + + LR+FF T+ YP E T R R Sbjct: 15 ILTGMGITLRHFFNAVKRKGDAGIDDAGYFGQVDGLVTLQYPKEAVPTPEIAR-----YR 69 Query: 56 YPNGEERCIACKLCEAICPAQAITIESGP-------------RCHDGTRRTVRYDIDMIK 102 N + CI C C CP + I +E+ +DID+ K Sbjct: 70 LYNNIDDCIGCGQCVRACPIECIAMETIKVTKDDLDLCGKTSNGQQKRFWVPVFDIDVAK 129 Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 C+ CG+C CP + + +F+ R + Y Sbjct: 130 CMTCGICASVCPTECLYHTTVSDFSEFNRDYMIYH 164 >gi|145219895|ref|YP_001130604.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Prosthecochloris vibrioformis DSM 265] gi|145206059|gb|ABP37102.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Chlorobium phaeovibrioides DSM 265] Length = 210 Score = 77.1 bits (188), Expect = 7e-13, Method: Composition-based stats. Identities = 42/181 (23%), Positives = 57/181 (31%), Gaps = 50/181 (27%) Query: 16 FVGAFFLCLRYF---FKAK-----------------TTINYPFEKGSTSPRFRGEHALRR 55 + L++F F K T+ YP E T RG + L Sbjct: 15 IATGMGITLKHFLNAFNRKGDAGIDDVDYFRQVDGLVTLQYPREAVPTPL--RGRYRLHN 72 Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCH-------------DGTRRTVRYDIDMIK 102 + CI C C CP I IE+ +DID K Sbjct: 73 AIDD---CIGCGQCVRACPVNCIEIETIKVMPEDLAACGKTSGGQQKKFWVPVFDIDTAK 129 Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPY 162 C+ CG+C CP + +V P +F+ RQ L Y L I D+ Sbjct: 130 CMTCGMCTNVCPTECLVHTPVSDFSEFDRQNLLYHFGNL------------SRIEADAKR 177 Query: 163 R 163 R Sbjct: 178 R 178 >gi|260913689|ref|ZP_05920165.1| hydrogenase-4 component H [Pasteurella dagmatis ATCC 43325] gi|260632228|gb|EEX50403.1| hydrogenase-4 component H [Pasteurella dagmatis ATCC 43325] Length = 189 Score = 77.1 bits (188), Expect = 7e-13, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 50/117 (42%), Gaps = 11/117 (9%) Query: 20 FFLCLRYFFK-AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78 F L+ FK T+ YPF+ P RG CI C C CPA A+ Sbjct: 1 MFKLLKTVFKTGDATVKYPFKPLDVHPDVRGRPEFNSDQ-----CIVCSACTMACPANAL 55 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 T+ + D + + + +CI+CG C+E CP AI +FE A + +L Sbjct: 56 TMRTDAVTGD-----RTWSLFLARCIFCGRCEEVCPTKAIRLTNDFELAVANKDDLL 107 >gi|171186239|ref|YP_001795158.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Thermoproteus neutrophilus V24Sta] gi|170935451|gb|ACB40712.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermoproteus neutrophilus V24Sta] Length = 132 Score = 77.1 bits (188), Expect = 7e-13, Method: Composition-based stats. Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 11/114 (9%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + F + L+Y F+ T+ +P E+ R RG N +CI+C+LCEA+CPA+ Sbjct: 5 LKMFGVALKYVFQRPITVRWPEERRDYGDRMRGFIV-----NDRGKCISCQLCEAVCPAK 59 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 AI ID +CI CG C +ACP ++ N E Sbjct: 60 AIKFHLEADGRRYPG------IDWGRCILCGYCVDACPTGSLKYVNNTEIVWTD 107 >gi|289811711|ref|ZP_06542340.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 112 Score = 77.1 bits (188), Expect = 8e-13, Method: Composition-based stats. Identities = 40/112 (35%), Positives = 56/112 (50%), Gaps = 8/112 (7%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LKE + F +R + F + T YP E PR+RG L R P+GEERC Sbjct: 1 MTLKELLVGFGTQVRSIWMIGLHAFAKRETRMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 +AC LC CP I+++ DG + I+ +CI+CGLC+E P Sbjct: 61 VACNLCAVACPVGCISLQKAE-TKDGRWYPEFFRINFSRCIFCGLCEERRPT 111 >gi|239905461|ref|YP_002952200.1| iron-sulfur binding protein [Desulfovibrio magneticus RS-1] gi|239795325|dbj|BAH74314.1| iron-sulfur binding protein [Desulfovibrio magneticus RS-1] Length = 199 Score = 77.1 bits (188), Expect = 9e-13, Method: Composition-based stats. Identities = 35/154 (22%), Positives = 53/154 (34%), Gaps = 29/154 (18%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHAL--RRYPNGEERCIACKLCE 70 LK + R F K T+ YP ++ + +RG L R RCIAC C Sbjct: 14 LKSLFVGLGITGRAFAKPAVTVIYPKQEVTNLDTYRGHIELVGREDNPAMPRCIACGACT 73 Query: 71 AICPAQAITIES---------------------------GPRCHDGTRRTVRYDIDMIKC 103 CP+Q +++ P G + + D C Sbjct: 74 RACPSQCLSVGCPVGAGSGGGDAEALELAGELIPVGTAMAPAPQKGCKVPGVFIYDYSLC 133 Query: 104 IYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 CG C ACPVD++ + + +R + D Sbjct: 134 SLCGQCVRACPVDSLRFSQHVYYVGRSRADFRLD 167 >gi|298674250|ref|YP_003726000.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein [Methanohalobium evestigatum Z-7303] gi|298287238|gb|ADI73204.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanohalobium evestigatum Z-7303] Length = 143 Score = 76.7 bits (187), Expect = 9e-13, Method: Composition-based stats. Identities = 31/122 (25%), Positives = 52/122 (42%), Gaps = 8/122 (6%) Query: 23 CLRYFFKAKTTINYPFEK-GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 ++ ++ TI P EK RF+G L + +CI C +C CP AI I Sbjct: 9 AIKSIYQPPVTIMCPEEKSRGIPERFKGLQVL-----DKSKCIGCGICANTCPNNAIKIV 63 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE--FATETRQELYYDKE 139 ++ +ID+ C++CGLC + CP DA+ + ++L + + Sbjct: 64 RSRVSKTSDKQRWFPEIDIGHCMFCGLCIDQCPQDALSSSKIYTSGVVKWNHEDLLFTPD 123 Query: 140 RL 141 L Sbjct: 124 EL 125 >gi|327310888|ref|YP_004337785.1| NADH-quinone oxidoreductase subunit I [Thermoproteus uzoniensis 768-20] gi|326947367|gb|AEA12473.1| NADH-quinone oxidoreductase, subunit I [Thermoproteus uzoniensis 768-20] Length = 132 Score = 76.7 bits (187), Expect = 9e-13, Method: Composition-based stats. Identities = 34/123 (27%), Positives = 54/123 (43%), Gaps = 11/123 (8%) Query: 12 FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71 L + + F + ++ + T++YP E R RG N ++CI+C LCEA Sbjct: 1 MLTDHIRLFAVAVKNALRGPITVDYPRESRDYGDRLRGYIV-----NDRDKCISCGLCEA 55 Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 +CPA+A+ GP ID +CI+CG C +ACP ++ E + Sbjct: 56 VCPAKAVKFSVGPDGKRYPG------IDYGRCIFCGYCVDACPTGSLRHTQWHEVVWTSL 109 Query: 132 QEL 134 Sbjct: 110 DTF 112 >gi|251790299|ref|YP_003005020.1| hydrogenase 4 subunit H [Dickeya zeae Ech1591] gi|247538920|gb|ACT07541.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dickeya zeae Ech1591] Length = 189 Score = 76.7 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 13/120 (10%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + F L+ +T+ YPF + FRG+ E+CI C C CPA Sbjct: 1 MIKLFKTILK---AGNSTVKYPFAPLAVPAGFRGKPE-----YAPEQCIGCAACTMACPA 52 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A+T+ + + + + +CI+CG C+E CP AIV FE A + +LY Sbjct: 53 NALTMANDLDNGT-----RTWQLFLGRCIFCGRCEEVCPTRAIVLSQEFEMAVANKADLY 107 >gi|20808125|ref|NP_623296.1| formate hydrogenlyase complex iron-sulfur subunit [Thermoanaerobacter tengcongensis MB4] gi|254479089|ref|ZP_05092442.1| 4Fe-4S binding domain protein [Carboxydibrachium pacificum DSM 12653] gi|20516712|gb|AAM24900.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Thermoanaerobacter tengcongensis MB4] gi|214034971|gb|EEB75692.1| 4Fe-4S binding domain protein [Carboxydibrachium pacificum DSM 12653] Length = 198 Score = 76.7 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 35/104 (33%), Positives = 52/104 (50%), Gaps = 10/104 (9%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T+ YPF+ + FRG+ A RCI C C CP+ AIT++ R Sbjct: 14 ATVEYPFKPVEVAQGFRGKPA-----YDFSRCIGCGACATACPSNAITMDCDLD-----R 63 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ++I+ +CI+CG C+E CP AIV FE A ++++Y Sbjct: 64 GIKSWNINYGRCIFCGRCEEVCPTGAIVLSTEFELAVIKKEDMY 107 Score = 33.5 bits (75), Expect = 9.5, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAI--TIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 ++ + RCI C CE +CP AI + E R + + +CI+CG Sbjct: 65 IKSWNINYGRCIFCGRCEEVCPTGAIVLSTEFELAVIKKEDMYCRAEFQLCRCIFCG 121 >gi|75764476|ref|ZP_00743963.1| NADH-quinone oxidoreductase chain I [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74488039|gb|EAO51768.1| NADH-quinone oxidoreductase chain I [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 111 Score = 76.7 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 36/112 (32%), Positives = 47/112 (41%), Gaps = 7/112 (6%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD--GTRRTVRYDID 99 RFRG E+CI C C ICP I + + YDI+ Sbjct: 2 PLPDRFRGIQKFY-----PEKCIVCNQCSNICPTDCIQLTGKKHPDPTKKGKIIDTYDIN 56 Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 CI C LC E CP +AIV NFE A +R +L+ + + L N + E Sbjct: 57 FEICILCDLCTEVCPTEAIVMTNNFELAEYSRDDLFKNLQWLDENDENVRKE 108 >gi|218884264|ref|YP_002428646.1| NuoI NADH dehydrogenase I, subunit I [Desulfurococcus kamchatkensis 1221n] gi|218765880|gb|ACL11279.1| NuoI NADH dehydrogenase I, subunit I [Desulfurococcus kamchatkensis 1221n] Length = 158 Score = 76.7 bits (187), Expect = 1e-12, Method: Composition-based stats. Identities = 34/115 (29%), Positives = 51/115 (44%), Gaps = 8/115 (6%) Query: 24 LRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 L+Y + T P +K +P RG H L +C C +C+ +CPA AI + + Sbjct: 10 LKYLLRKPYTRQVPRIDKPFKTPVTRGSHVL-----DMLKCTGCSMCQQVCPANAIDMVT 64 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG--PNFEFATETRQELY 135 + R ID+ KC +CGLC E CP +A+ +E T + L Sbjct: 65 ADGDYPQNPRKRFPRIDLHKCTFCGLCVEYCPFNALSMTTATGYELFTVDKSTLL 119 >gi|50120179|ref|YP_049346.1| hydrogenase 4 subunit H [Pectobacterium atrosepticum SCRI1043] gi|49610705|emb|CAG74150.1| hydrogenase-4 component H [Pectobacterium atrosepticum SCRI1043] Length = 183 Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 34/104 (32%), Positives = 50/104 (48%), Gaps = 10/104 (9%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T+ YPF P FRG+ ++CIAC C CPA A+T+E+ Sbjct: 15 VTVKYPFAPLEVCPGFRGKPE-----YDAQQCIACGACTIACPANALTMETDIETGA--- 66 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 + + + +CI+CG C+E CP AI +FE A + +LY Sbjct: 67 --RTWQLFLGRCIFCGRCEEVCPTRAIQLSADFELAVTHKPDLY 108 >gi|260893115|ref|YP_003239212.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ammonifex degensii KC4] gi|260865256|gb|ACX52362.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ammonifex degensii KC4] Length = 147 Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 42/128 (32%), Positives = 51/128 (39%), Gaps = 14/128 (10%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + + LR F T YP E S P RGE E C+ C+ CE CP Sbjct: 1 MKMLSVVLRNLFSPPVTRKYPQEIRSPFPATRGEIVFT-----VEECMTCRRCERTCPVG 55 Query: 77 AITIESGPRCH---------DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 AI +E GPR G R ++ D KCIYCGLC E CP IV Sbjct: 56 AIKVEIGPRLEVASAGEGQTRGAGRLIKRRYDPYKCIYCGLCIEVCPQGIIVFQGTHTSP 115 Query: 128 TETRQELY 135 ++E Sbjct: 116 ATRKEEKV 123 >gi|325104669|ref|YP_004274323.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pedobacter saltans DSM 12145] gi|324973517|gb|ADY52501.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pedobacter saltans DSM 12145] Length = 194 Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 41/178 (23%), Positives = 61/178 (34%), Gaps = 39/178 (21%) Query: 13 LKEFVGAFFLCLRYF---FKAK-----------------TTINYPFEKGSTSPRFRGEHA 52 LK + ++ FK+K T+ YP +K R Sbjct: 10 LKTSWKGLTITFKHLIGAFKSKKIKGIEDPNYFEEQAGIVTLQYPHQKLPIPEVGR---- 65 Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR---------RTVRYDIDMIKC 103 + + CI C LC ICP I IES + ++DIDM KC Sbjct: 66 -YQLHVEIDDCIVCDLCAKICPVDCIEIESIKATEAIGKTSDGSVKRLYAAKFDIDMAKC 124 Query: 104 IYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161 +YCGLC CP + I ++ + + EL Y + E ++ D Sbjct: 125 MYCGLCTTVCPTECITMTNQYDRSFPSITELNYKFSTMTE-----EEAELKRQELDKQ 177 >gi|94269628|ref|ZP_01291517.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium MLMS-1] gi|93451146|gb|EAT02073.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium MLMS-1] Length = 131 Score = 76.3 bits (186), Expect = 1e-12, Method: Composition-based stats. Identities = 34/108 (31%), Positives = 52/108 (48%), Gaps = 2/108 (1%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGE--ERCIACKLCEAICPAQAITIESGPRCHDG 89 T+ YP + +PR+RG L E +CIAC +C+ CP+ IT++S Sbjct: 14 VTLQYPRQTFKMAPRYRGHIDLIFDAEAESGNKCIACGMCQRNCPSDCITLKSEKPEGAK 73 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 + Y +D KC CGLC E+CP DA+ + A ++ +D Sbjct: 74 KKVLTGYQLDFTKCSLCGLCVESCPTDALEFSKEYNLAGLKAEDYVFD 121 >gi|261368107|ref|ZP_05980990.1| putative Ech hydrogenase, subunit EchF [Subdoligranulum variabile DSM 15176] gi|282569865|gb|EFB75400.1| putative Ech hydrogenase, subunit EchF [Subdoligranulum variabile DSM 15176] Length = 146 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 43/118 (36%), Gaps = 14/118 (11%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80 L+ F T +YPF R RG + E CI+C +C CP A+T+ Sbjct: 11 GTALKNLFSKPVTTSYPFAPAQYPERMRGHIEI-----DIESCISCGMCARSCPPGALTV 65 Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 + R + I C+ CG C CP + P + TR Y + Sbjct: 66 D---------RAAGTWTIQRFDCVQCGNCVNVCPKKCLKMVPGYTTPDTTRHSDTYTR 114 >gi|156934234|ref|YP_001438150.1| formate hydrogenlyase complex iron-sulfur subunit [Cronobacter sakazakii ATCC BAA-894] gi|156532488|gb|ABU77314.1| hypothetical protein ESA_02064 [Cronobacter sakazakii ATCC BAA-894] Length = 180 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 53/136 (38%), Gaps = 10/136 (7%) Query: 25 RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84 + T YP + FRG+ + ++CI C C CP+ A+T+E+ Sbjct: 7 KALKTGVATQPYPLQPMPVDKNFRGKP-----QHNPQQCIGCAACINACPSNALTVETDL 61 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNN 144 + + + ++ +CI+CG C+E CP AI P +E A +++ L Sbjct: 62 QHDR-----LDWQFNLGRCIFCGRCEEVCPTAAIRLTPEYELAVWRKEDFLQQASFALCR 116 Query: 145 GDRWESEIVRNIVTDS 160 + D Sbjct: 117 CRVCQQPFAVQKEVDY 132 >gi|325969470|ref|YP_004245662.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Vulcanisaeta moutnovskia 768-28] gi|323708673|gb|ADY02160.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Vulcanisaeta moutnovskia 768-28] Length = 194 Score = 75.9 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 38/146 (26%), Positives = 53/146 (36%), Gaps = 16/146 (10%) Query: 17 VGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 A + + + TI YP E RFRG L ++CI+C C CP Sbjct: 20 AKALITGFKEAIEPNRLTIQYPREVRWVPERFRGWIML-----DIKKCISCFQCAWACPV 74 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 AI + P I +CI C C +ACPV A++ P + A E+ Sbjct: 75 NAIQMYRAPNGKFYPG------IRYTECILCHFCVDACPVGALIPTPIHDIAYVDFDEVK 128 Query: 136 YDKERLLN----NGDRWESEIVRNIV 157 + E + D E I I Sbjct: 129 FKPEDMSRSPEYIYDESERVIKYEIK 154 >gi|270263098|ref|ZP_06191368.1| formate hydrogenlyase complex iron-sulfur subunit [Serratia odorifera 4Rx13] gi|270042786|gb|EFA15880.1| formate hydrogenlyase complex iron-sulfur subunit [Serratia odorifera 4Rx13] Length = 177 Score = 75.5 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 32/142 (22%), Positives = 56/142 (39%), Gaps = 10/142 (7%) Query: 19 AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78 L + T+ YP + + FRG+ ++CIAC C CP+ A+ Sbjct: 1 MLKLIKKVLKTGNATVAYPAQPLAVDANFRGKPE-----YSPQQCIACGACANACPSNAL 55 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 T+E+ +R+ + +CI+C C+E CP A+ FE A +++L Sbjct: 56 TMETDVENGV-----IRWQFFLGRCIFCARCEEVCPTTALRLSNQFELAVWRKEDLLESA 110 Query: 139 ERLLNNGDRWESEIVRNIVTDS 160 + L + + D Sbjct: 111 DFALCHCRQCGKAYAPQKEIDY 132 >gi|91202885|emb|CAJ72524.1| strongly similar to membrane-bound [NiFe]-hydrogenase-3, small subunit (chain G) [Candidatus Kuenenia stuttgartiensis] Length = 262 Score = 75.5 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 12/111 (10%) Query: 25 RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84 + F T YP++K FRG + E+C AC +C CP A T Sbjct: 7 KSFQTGIATSGYPWKKEPAPLHFRGRIEI-----DSEKCKACNVCVETCPTNAYTWIEE- 60 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 G R + KC++CG+C+E CP AI +FE A +++L Sbjct: 61 ---QGKRYL---QLSHAKCVFCGMCEEVCPYKAIRITNDFELAATNKEDLL 105 >gi|327400432|ref|YP_004341271.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein [Archaeoglobus veneficus SNP6] gi|327315940|gb|AEA46556.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Archaeoglobus veneficus SNP6] Length = 176 Score = 75.5 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 37/128 (28%), Positives = 54/128 (42%), Gaps = 12/128 (9%) Query: 17 VGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + AF + LR K + T+ YP E FRG +CI+C C +CPA Sbjct: 22 LEAFGIGLREAIKPSRLTVQYPREIRKRPDNFRGMLIFEID-----KCISCFQCAFVCPA 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 AI ++ GP ++ KCI+C C + CP A + A T +E+ Sbjct: 77 NAIAMKKGPDGKYYP------SVNYAKCIFCHFCADTCPKGAWKSSKFMDVAFPTIEEML 130 Query: 136 YDKERLLN 143 E+LL Sbjct: 131 LTTEKLLR 138 >gi|260597691|ref|YP_003210262.1| formate hydrogenlyase complex iron-sulfur subunit [Cronobacter turicensis z3032] gi|260216868|emb|CBA30405.1| Formate hydrogenlyase subunit 6 [Cronobacter turicensis z3032] Length = 180 Score = 75.5 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 30/136 (22%), Positives = 52/136 (38%), Gaps = 10/136 (7%) Query: 25 RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84 + T YP + FRG+ + ++CI C C CP+ A+T+E+ Sbjct: 7 KALKTGVATQPYPLQPMPVDKNFRGKP-----QHNPQQCIGCAACINACPSNALTVETDL 61 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNN 144 + + ++ +CI+CG C+E CP AI P +E A +++ L Sbjct: 62 EHDR-----LDWQFNLGRCIFCGRCEEVCPTAAIRLTPEYELAVWRKEDFLQQASFALCR 116 Query: 145 GDRWESEIVRNIVTDS 160 + D Sbjct: 117 CRVCQQPFAVQKEVDY 132 >gi|117925495|ref|YP_866112.1| oxidoreductase [Magnetococcus sp. MC-1] gi|117609251|gb|ABK44706.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Magnetococcus sp. MC-1] Length = 598 Score = 75.5 bits (184), Expect = 2e-12, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 7/119 (5%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80 F + F+ +I P + +PR+RG H N E+CI C CEAIC AI + Sbjct: 10 FTAWKNLFREPVSIKDPIHR-KAAPRYRGFH-----KNDVEKCIGCGTCEAICQNGAIDM 63 Query: 81 -ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 E+ + + +R ID +C +C LC + C ++ +++ + + Sbjct: 64 VENRDVPGNRSDSGLRPRIDYGRCCWCALCVDVCMTSSLTMSNAYQWVDSDPKAFMFTP 122 >gi|307595216|ref|YP_003901533.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Vulcanisaeta distributa DSM 14429] gi|307550417|gb|ADN50482.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Vulcanisaeta distributa DSM 14429] Length = 194 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 49/126 (38%), Gaps = 12/126 (9%) Query: 17 VGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 A + + + TI YP E RFRG L ++CI+C C CP Sbjct: 20 AKALITGFKEAVEPNRLTIQYPREVRWIPERFRGWIML-----DIKKCISCFQCAWACPV 74 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 AI + P I +CI C C +ACPV A++ P + A E+ Sbjct: 75 NAIQMYRAPNGKFYPG------IRYTECILCHFCVDACPVGALIPTPIHDIAYVDFDEVK 128 Query: 136 YDKERL 141 + E + Sbjct: 129 FKPEDM 134 >gi|189500534|ref|YP_001960004.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Chlorobium phaeobacteroides BS1] gi|189495975|gb|ACE04523.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chlorobium phaeobacteroides BS1] Length = 206 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 49/157 (31%), Gaps = 38/157 (24%) Query: 14 KEFVGAFFLCLRYFFK--------------------AKTTINYPFEKGSTSPRFRGEHAL 53 + + LR+FF T+ YP E T R Sbjct: 13 TSILTGMGITLRHFFNAVKRKGDAGIDEENYFNQVDGLVTLQYPREAVPTPEIGRYRL-- 70 Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCH-------------DGTRRTVRYDIDM 100 N + CI C C CP I +E+ +DID+ Sbjct: 71 ---YNEIDDCIGCGQCVRACPIDCIMMETIKVTKDDLAVCGKTSGGQQKKFWVPVFDIDV 127 Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 +C+ CG+C CP + + +F+ R+ + Y Sbjct: 128 AQCMTCGICSAVCPTECLYHTQVSDFSEFRRENMIYH 164 >gi|78188617|ref|YP_378955.1| NADH dehydrogenase I, 23 kDa subunit [Chlorobium chlorochromatii CaD3] gi|78170816|gb|ABB27912.1| NADH dehydrogenase I, 23 kDa subunit [Chlorobium chlorochromatii CaD3] Length = 200 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 54/170 (31%), Gaps = 39/170 (22%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFK--------------------AKTTINYPFEK 40 M + N+ + + L++FF T+ YP E Sbjct: 1 MSEYFSNIKSSAVT-IASGMAITLKHFFNAVHRKGDAGLDDVDYFKQVDGLVTLQYPHEV 59 Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH------------- 87 T R N E CI C C CP IT+E+ Sbjct: 60 IPTPQHGRYRL-----YNNIEDCIGCGQCVRACPITCITMETIKVLPEDLASCGKTSDGQ 114 Query: 88 DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 +DID+ KC+ CG+C CP + + P +F+ R + Y Sbjct: 115 QKKFWIPVFDIDVAKCMTCGICTTVCPTECLYHTPVSDFSEFDRNSMMYH 164 >gi|118431451|ref|NP_147932.2| NADH dehydrogenase subunit I [Aeropyrum pernix K1] gi|116062775|dbj|BAA80416.2| NuoI homolog [Aeropyrum pernix K1] Length = 186 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 32/131 (24%), Positives = 58/131 (44%), Gaps = 10/131 (7%) Query: 14 KEFVGAFFLCLRYFFKAK-TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + + A + L+YF + +I YP E +RG L + +CI+C C I Sbjct: 21 TDNLAALMIGLKYFVNPRRFSIYYPKEYPELRQGYRGFIIL-----NKAKCISCAACARI 75 Query: 73 CPAQAITIE----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 CP+ A+ + P+ + I+ +CI+CG C + CP +A+ + Sbjct: 76 CPSAAMKMIRVPVPHPKEPEKKVTKQFPVINYQRCIFCGYCVDICPTEALYHVNYHDIVY 135 Query: 129 ETRQELYYDKE 139 + E+++D E Sbjct: 136 DNLAEMFWDLE 146 >gi|296242365|ref|YP_003649852.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Thermosphaera aggregans DSM 11486] gi|296094949|gb|ADG90900.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermosphaera aggregans DSM 11486] Length = 133 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 30/119 (25%), Positives = 44/119 (36%), Gaps = 8/119 (6%) Query: 18 GAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA 77 L L T+ YP++ P FRG H +C C LC CPA Sbjct: 5 KLLKLTLENLVSKPATVQYPYQPTVIEPDFRGRH-----YADLSKCTGCSLCSIECPADT 59 Query: 78 ITIESGPR---CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 I + P+ R + I+ +CI+C C CP +A V + A + + Sbjct: 60 IKMTPIPQEYEVPKSNPRRLYPLINYGRCIFCYRCITVCPFNAYVTTNEYRLADTAKND 118 >gi|238921133|ref|YP_002934648.1| formate hydrogenlyase complex iron-sulfur subunit [Edwardsiella ictaluri 93-146] gi|238870702|gb|ACR70413.1| hydrogenase-4 component H [Edwardsiella ictaluri 93-146] Length = 185 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 33/119 (27%), Positives = 53/119 (44%), Gaps = 13/119 (10%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + LR+ T+ YP FRG+ ++CIAC C A CPA Sbjct: 1 MLKLLKTALRH---RHATVAYPARPLDVDANFRGKP-----QYDAQQCIACGACTAACPA 52 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134 A+T+++ + +++ +CI+C C+E CP AIV FE A +++L Sbjct: 53 NALTMQTDAASGV-----RTWALNLGRCIFCARCEEVCPTAAIVLSSEFELAVWRKEDL 106 >gi|320101009|ref|YP_004176601.1| NADH-ubiquinone oxidoreductase subunit I [Desulfurococcus mucosus DSM 2162] gi|319753361|gb|ADV65119.1| NADH-ubiquinone oxidoreductase, subunit I [Desulfurococcus mucosus DSM 2162] Length = 133 Score = 75.1 bits (183), Expect = 3e-12, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 40/114 (35%), Gaps = 8/114 (7%) Query: 18 GAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA 77 L + TI YP E FRG H +C C LC CPA A Sbjct: 5 KILGLAVSNLASKPATIEYPKEPTPVEEDFRGRH-----YADLSKCTGCSLCSIECPADA 59 Query: 78 ITIESGPR---CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 I + P R + ID KC+YC C CP +A + + A Sbjct: 60 IKMTPIPEGYDVPKSNPRRIYPLIDYGKCVYCYRCISVCPFNAYIHTNEYRLAD 113 >gi|326390320|ref|ZP_08211879.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Thermoanaerobacter ethanolicus JW 200] gi|325993597|gb|EGD52030.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Thermoanaerobacter ethanolicus JW 200] Length = 162 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 2/102 (1%) Query: 24 LRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYP-NGEERCIACKLCEAICPAQAITIES 82 L+ FK T+ YP E P+ R N +CI C +C+ ICP AI ++ Sbjct: 15 LKNLFKKPMTVKYPKEILKVFPKDGVSPIYRGLHTNDLNKCIGCGMCQRICPFDAIEMKV 74 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 G R + +D +C +CG C + CP +++ ++ Sbjct: 75 IGENEQG-RAIKKPVVDYGRCSFCGFCVDVCPTNSLKMSRHY 115 >gi|146312834|ref|YP_001177908.1| formate hydrogenlyase complex iron-sulfur subunit [Enterobacter sp. 638] gi|145319710|gb|ABP61857.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Enterobacter sp. 638] Length = 180 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 53/117 (45%), Gaps = 11/117 (9%) Query: 20 FFLCLRYFFK-AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78 F ++ K T +YP E FRG+ + ++CI C C CP+ A+ Sbjct: 1 MFTFIKKLVKTGTVTSSYPLEPIPVDKNFRGKPE-----HNPQQCIGCAACVNACPSNAL 55 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 T+E+ + + + ++ +CI+CG C+E CP AI +E A +++ Sbjct: 56 TVETDLAT-----KELAWQFNLGRCIFCGRCEEVCPTVAIKLSQEYELAVWKKEDFL 107 >gi|254173917|ref|ZP_04880588.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermococcus sp. AM4] gi|214032166|gb|EEB72997.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermococcus sp. AM4] Length = 168 Score = 74.7 bits (182), Expect = 4e-12, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 47/115 (40%), Gaps = 10/115 (8%) Query: 20 FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79 L + K T YPF +RG+ + E+CI C C CP QAI Sbjct: 4 LKLISKALSIGKVTEKYPFAPIEVPEDYRGKPVI-----DGEKCIGCGACANACPPQAI- 57 Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134 D R + + +CI+C CQ+ CPV AI FE AT + +L Sbjct: 58 ----QVYDDVERGVRVVHLFLGRCIFCARCQDVCPVGAIKLTKEFELATPDQDDL 108 >gi|171185123|ref|YP_001794042.1| NADH dehydrogenase subunit I [Thermoproteus neutrophilus V24Sta] gi|170934335|gb|ACB39596.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermoproteus neutrophilus V24Sta] Length = 156 Score = 74.4 bits (181), Expect = 4e-12, Method: Composition-based stats. Identities = 38/125 (30%), Positives = 52/125 (41%), Gaps = 13/125 (10%) Query: 17 VGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + A + R F K + T+ YP+EK R RG L E+C +C LC ICP Sbjct: 13 LDALAVAARNFAKPERITVFYPYEKLEY-GRMRGWIGLW-----TEKCTSCMLCARICPT 66 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 AI + P ID +CI C C + CP DA+ E A +E+ Sbjct: 67 NAIKMYMEPNGKRYPG------IDYGRCIMCHFCIDVCPTDALYPTDIKELAWYDYKEMI 120 Query: 136 YDKER 140 Y + Sbjct: 121 YTPDM 125 >gi|307265393|ref|ZP_07546949.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306919507|gb|EFN49725.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 162 Score = 74.4 bits (181), Expect = 5e-12, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 2/102 (1%) Query: 24 LRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYP-NGEERCIACKLCEAICPAQAITIES 82 L+ FK T+ YP E P+ R N +CI C +C+ ICP AI ++ Sbjct: 15 LKNLFKKPMTVKYPKEILKVFPKDGVSPIYRGLHTNDLNKCIGCGMCQRICPFDAIEMKV 74 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 G R + +D +C +CG C + CP +++ ++ Sbjct: 75 IGENEQG-RAIKKPVVDYGRCSFCGFCVDVCPTNSLKMSRHY 115 >gi|254173159|ref|ZP_04879832.1| hydrogenase-4 component b [Thermococcus sp. AM4] gi|214032568|gb|EEB73397.1| hydrogenase-4 component b [Thermococcus sp. AM4] Length = 201 Score = 74.4 bits (181), Expect = 5e-12, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 44/107 (41%), Gaps = 10/107 (9%) Query: 29 KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88 KA T YPF P +RG + E+CI C C CP A+ +E Sbjct: 25 KAPVTTPYPFIDIEKPPEYRGIPHI-----NPEKCIGCGACVNACPPDALILEWDKEHGV 79 Query: 89 GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 R + +CI C C E CP A+ FE AT+ +++L Sbjct: 80 -----KRLTFNAARCIRCHRCVEVCPTGAMEPTNIFEIATDNKEDLV 121 >gi|240102301|ref|YP_002958609.1| formate hydrogenlyase I subunit G (Mhy1G) [Thermococcus gammatolerans EJ3] gi|239909854|gb|ACS32745.1| formate hydrogenlyase I subunit G (Mhy1G) [Thermococcus gammatolerans EJ3] Length = 201 Score = 74.4 bits (181), Expect = 5e-12, Method: Composition-based stats. Identities = 32/107 (29%), Positives = 44/107 (41%), Gaps = 10/107 (9%) Query: 29 KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88 KA T YPF P +RG + E+CI C C CP A+ +E Sbjct: 25 KAPVTTPYPFIDIEKPPEYRGIPHI-----NPEKCIGCGACVNACPPDALILEWDKEHGV 79 Query: 89 GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 R + +CI C C E CP A+ FE AT+ +++L Sbjct: 80 -----KRLTFNAARCIRCHRCVEVCPTGAMEPTNIFEIATDNKEDLV 121 >gi|323388075|gb|ADX60299.1| hypothetical protein [Furcellaria lumbricalis] Length = 49 Score = 74.4 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 37/48 (77%), Positives = 43/48 (89%) Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDR 147 M KCI+CG CQEACPVDAIVEGPN+E+ATET +EL Y+KE+LL NGDR Sbjct: 2 MTKCIFCGACQEACPVDAIVEGPNYEYATETHEELLYNKEKLLENGDR 49 >gi|327312049|ref|YP_004338946.1| NADH-quinone oxidoreductase subunit I [Thermoproteus uzoniensis 768-20] gi|326948528|gb|AEA13634.1| NADH-quinone oxidoreductase, subunit I [Thermoproteus uzoniensis 768-20] Length = 178 Score = 74.4 bits (181), Expect = 6e-12, Method: Composition-based stats. Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 12/122 (9%) Query: 21 FLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79 L ++Y K + TI YP+E R RG L ERC +C +C ICP AI Sbjct: 18 GLGVKYTIKPERLTIYYPYEVPDYMGRVRGWIGLW-----TERCTSCMICARICPTNAIK 72 Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139 + ID +CI C C +ACP A+ +FA +++ Y + Sbjct: 73 MYMEKNGRRYPG------IDYGRCIMCHYCIDACPTYALYPTDIRDFAFYRHEDMMYTPD 126 Query: 140 RL 141 + Sbjct: 127 MM 128 >gi|242278966|ref|YP_002991095.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio salexigens DSM 2638] gi|242121860|gb|ACS79556.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio salexigens DSM 2638] Length = 201 Score = 74.0 bits (180), Expect = 6e-12, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 55/162 (33%), Gaps = 29/162 (17%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSP--RFRGEHALRRYPNG 59 +I+ S L + + + F T++YP E ++ FRG L P Sbjct: 6 KIWDDVTS---LWSLIVGLKVTGKNFVDKNVTLHYPRETVTSGELEGFRGPLELIGKPKD 62 Query: 60 E--ERCIACKLCEAICPAQAITIESGPRC----------------------HDGTRRTVR 95 +CIAC +C CP++ IT+ + + Sbjct: 63 PAKPKCIACMMCVTACPSKCITVVKAKAPKPTEAELQAMKEAEERGEKVNKPKAPKEPAK 122 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 + D C CG C E CP A+ N R+EL D Sbjct: 123 FLYDFSLCSLCGSCVENCPAKALRYSSNVYLTVTDRKELKMD 164 >gi|315230910|ref|YP_004071346.1| hydrogenase-4 component H [Thermococcus barophilus MP] gi|315183938|gb|ADT84123.1| hydrogenase-4 component H [Thermococcus barophilus MP] Length = 172 Score = 74.0 bits (180), Expect = 6e-12, Method: Composition-based stats. Identities = 35/115 (30%), Positives = 49/115 (42%), Gaps = 10/115 (8%) Query: 20 FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79 F L + K T YPF FRG+ + E+CI C C CP QA+ Sbjct: 4 FKLIAKAVSIGKVTEKYPFVPIEVPEGFRGKPVI-----DPEKCIGCTSCSNACPPQALQ 58 Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134 + P R + + +CI+C CQ+ CP AI FE AT + ++L Sbjct: 59 VYDEPE-----RGVRVVHLFIGRCIFCARCQDVCPTGAIKLTKEFELATLSEEDL 108 >gi|194336917|ref|YP_002018711.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pelodictyon phaeoclathratiforme BU-1] gi|194309394|gb|ACF44094.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pelodictyon phaeoclathratiforme BU-1] Length = 214 Score = 74.0 bits (180), Expect = 6e-12, Method: Composition-based stats. Identities = 36/155 (23%), Positives = 50/155 (32%), Gaps = 38/155 (24%) Query: 16 FVGAFFLCLRYFFK--------------------AKTTINYPFEKGSTSPRFRGEHALRR 55 + L++FF T+ YP E T R Sbjct: 15 IAAGMGITLKHFFNAIHRKGDAGLDDVDYFRQVDGLCTLQYPREVIPTPKHGRYRL---- 70 Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGT-------------RRTVRYDIDMIK 102 N E CI C C CP IT+E+ D +DID+ K Sbjct: 71 -YNKIEDCIGCGQCVRACPISCITMETIKVAPDDMALCGKTSDGQQKKFWIPVFDIDVAK 129 Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 C+ CG+C CP + +V P +F+ R Y Sbjct: 130 CMTCGICTTVCPTECLVHTPVSDFSEFDRSNFIYH 164 >gi|57642028|ref|YP_184506.1| NADH-plastoquinone oxidoreductase subunit [Thermococcus kodakarensis KOD1] gi|57160352|dbj|BAD86282.1| membrane bound hydrogenase, 4Fe-4S cluster-binding subunit [Thermococcus kodakarensis KOD1] Length = 143 Score = 74.0 bits (180), Expect = 6e-12, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 44/113 (38%), Gaps = 15/113 (13%) Query: 22 LCLRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80 + LR FK T +P E FRG A +C+ C++C +CPA Sbjct: 9 VVLRNLFKKPATNRFPQTEPVPIPEDFRGMIAYNVD-----KCVGCRMCVNVCPAGVFVY 63 Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 R + + +C+YCG C + CP A+ +F A+ + Sbjct: 64 LPEIR---------KVALWTARCVYCGQCVDVCPTGALQLSKDFLLASYDNHD 107 >gi|14520927|ref|NP_126402.1| NADH-plastoquinone oxidoreductase subunit [Pyrococcus abyssi GE5] gi|5458144|emb|CAB49633.1| cooX-like CO-induced hydrogenase related, subunit X [Pyrococcus abyssi GE5] Length = 138 Score = 74.0 bits (180), Expect = 6e-12, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 17/120 (14%) Query: 20 FFLCLRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78 ++ FK T +P E FRG+ +C+ C++C +CPA Sbjct: 7 LSTVIKNLFKPPATNPFPKTEPVPVPENFRGKIVYNVD-----KCVGCRMCVTVCPAGVF 61 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR--QELYY 136 R + + +C++C C + CP A+ F A+ + ++ Y Sbjct: 62 VYLPEIR---------KVALWTGRCVFCKQCVDVCPTGALQMSDEFLLASYDKYDEKFIY 112 >gi|159040890|ref|YP_001540142.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Caldivirga maquilingensis IC-167] gi|157919725|gb|ABW01152.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Caldivirga maquilingensis IC-167] Length = 166 Score = 74.0 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 51/126 (40%), Gaps = 12/126 (9%) Query: 17 VGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + A + ++ F K + TI YP E+ RFRG N E+CI+C C CP Sbjct: 17 LNALAVGVKEFVKPTRFTIQYPRERRWVIDRFRGFMI-----NDVEKCISCFQCAWACPV 71 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 AI + P I +CI C C +ACPV ++ + A + Sbjct: 72 NAIFMYRAPNGKYYPG------IRYEQCILCHFCVDACPVGSLQGTTISDGAFPDLESTV 125 Query: 136 YDKERL 141 + E + Sbjct: 126 FKPEDM 131 >gi|189502386|ref|YP_001958103.1| hypothetical protein Aasi_1026 [Candidatus Amoebophilus asiaticus 5a2] gi|189497827|gb|ACE06374.1| hypothetical protein Aasi_1026 [Candidatus Amoebophilus asiaticus 5a2] Length = 184 Score = 74.0 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 37/108 (34%), Positives = 50/108 (46%), Gaps = 14/108 (12%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH---- 87 T+ YP EK RG + L N E CI C C ICP I IES P Sbjct: 47 ITLQYPHEKLPVPS--RGRYKL---HNAIEDCIVCDKCAKICPVDCIEIESIPAPDVFGI 101 Query: 88 --DGTRRTVR---YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 +G ++ + +DIDM KC +CGLC CP + + P ++F+ Sbjct: 102 TSNGMKKRIHAAKFDIDMAKCCFCGLCTTVCPTECLTMTPEYDFSVFD 149 >gi|256826556|ref|YP_003150515.1| NADH:ubiquinone oxidoreductase chain I-like protein [Cryptobacterium curtum DSM 15641] gi|256582699|gb|ACU93833.1| NADH:ubiquinone oxidoreductase chain I-like protein [Cryptobacterium curtum DSM 15641] Length = 181 Score = 74.0 bits (180), Expect = 7e-12, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 51/148 (34%), Gaps = 11/148 (7%) Query: 17 VGAFFLCLRYFFK-AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + A LR K TI YPF T P RG+ A Sbjct: 1 MKAMLKTLRNILKTGDATIKYPFAPYDTVPYMRGKPEHDLEKCIACA----------ACA 50 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A + D + T+ + ID +CI+CG C+E CPV AI FE A ++ +L Sbjct: 51 VACPPNAIQMPTDLSAGTITWSIDYGRCIFCGRCEEVCPVVAIKLTNEFELAVASKSDLI 110 Query: 136 YDKERLLNNGDRWESEIVRNIVTDSPYR 163 D L + D R Sbjct: 111 EDCTYTLQKCSKCGQYFAPRKEVDYAVR 138 >gi|261342162|ref|ZP_05970020.1| formate hydrogenlyase subunit 6 [Enterobacter cancerogenus ATCC 35316] gi|288315495|gb|EFC54433.1| formate hydrogenlyase subunit 6 [Enterobacter cancerogenus ATCC 35316] Length = 180 Score = 73.6 bits (179), Expect = 8e-12, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 10/128 (7%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 T YP E FRG+ + ++CI C C CP+ A+T+E + Sbjct: 15 TSRYPLEPLPVDKNFRGKPE-----HNPQQCIGCAACVNACPSNALTVEIDLKSG----- 64 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEI 152 + + ++ +CI+CG C+E CP AI +E A +++ +L N + Sbjct: 65 ELAWQFNLGRCIFCGRCEEVCPTAAIRLSQEYELAVWKKEDFLQQSRFVLCNCRVCKRPF 124 Query: 153 VRNIVTDS 160 D Sbjct: 125 AVQKEIDY 132 >gi|126465959|ref|YP_001041068.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Staphylothermus marinus F1] gi|126014782|gb|ABN70160.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Staphylothermus marinus F1] Length = 175 Score = 73.6 bits (179), Expect = 8e-12, Method: Composition-based stats. Identities = 31/103 (30%), Positives = 49/103 (47%), Gaps = 12/103 (11%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T+ YP++K + FRG+ ++ +CIAC C +CP A+T+ Sbjct: 22 VTVLYPYQKPLITSEFRGKISI-----DPSKCIACGACVNVCPPNALTLSKQENI----- 71 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134 + + + +CI+CG C E CPV AI FE A+ +L Sbjct: 72 --IMINYFIGRCIFCGRCAEVCPVGAITVTNEFELASTRIDDL 112 >gi|240102116|ref|YP_002958424.1| formate hydrogenlyase II subunit G (Mhy2G) [Thermococcus gammatolerans EJ3] gi|239909669|gb|ACS32560.1| formate hydrogenlyase II subunit G (Mhy2G) [Thermococcus gammatolerans EJ3] Length = 165 Score = 73.6 bits (179), Expect = 8e-12, Method: Composition-based stats. Identities = 36/104 (34%), Positives = 47/104 (45%), Gaps = 10/104 (9%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T+ YPF K P +RG + CI C C CPA A+ R D + Sbjct: 3 VTLKYPFVKIEAPPEYRGVPHI-----NPRLCIGCGACVNACPADAL-----LRIDDYEK 52 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 T + +D+ +CI C C EACP AI NFE AT R++ Sbjct: 53 GTRKIVLDVGRCIRCARCDEACPTGAIRMTRNFEVATLDRKDHV 96 >gi|18312729|ref|NP_559396.1| NADH dehydrogenase subunit I [Pyrobaculum aerophilum str. IM2] gi|18160208|gb|AAL63578.1| NADH-ubiquinone oxidoreductase subunit [Pyrobaculum aerophilum str. IM2] Length = 155 Score = 73.6 bits (179), Expect = 1e-11, Method: Composition-based stats. Identities = 38/125 (30%), Positives = 54/125 (43%), Gaps = 13/125 (10%) Query: 17 VGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + AF + ++ F K + TI YP+EK R RG L E+C +C LC ICP Sbjct: 12 IDAFRVAVKNFVKPERITIYYPYEKLEY-GRMRGWIGLW-----TEKCTSCFLCARICPT 65 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 AI + P ID +CI C C + CP +A+ E A +E+ Sbjct: 66 NAIKMYLAPNTKRYPG------IDYGRCIMCHFCIDICPTEALYPTDIMELAWYDYKEMI 119 Query: 136 YDKER 140 Y + Sbjct: 120 YTPDM 124 >gi|212223421|ref|YP_002306657.1| Formate hydrogen lyase subunit 6 [Thermococcus onnurineus NA1] gi|212008378|gb|ACJ15760.1| Formate hydrogen lyase subunit 6 [Thermococcus onnurineus NA1] Length = 205 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 33/107 (30%), Positives = 43/107 (40%), Gaps = 10/107 (9%) Query: 29 KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88 KA T +YPF P +RG + CI C C CP A+TIE Sbjct: 23 KAPVTTSYPFVDIEKPPEYRGIPRI-----DPHLCIGCGACVRACPPDALTIEWDFENGR 77 Query: 89 GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 R + +CI C C E CP A+ FE AT +++L Sbjct: 78 -----KRIVFNAARCIRCHRCVEVCPTGAMQGTTRFEIATPNKEDLI 119 >gi|296104396|ref|YP_003614542.1| formate hydrogenlyase complex iron-sulfur subunit [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295058855|gb|ADF63593.1| formate hydrogenlyase complex iron-sulfur subunit [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 180 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 10/128 (7%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 T YP E FRG+ + ++CI C C CP+ A+T+E+ + Sbjct: 15 TSRYPLEPMPVDKNFRGKPE-----HNPQQCIGCAACVNACPSNALTVETDLKTG----- 64 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEI 152 + + ++ +CI+CG C+E CP AI +E A +++ L N + Sbjct: 65 ELAWQFNLGRCIFCGRCEEVCPTVAIRLSQEYELAVWKKEDFLQQSRFALCNCRVCKRPF 124 Query: 153 VRNIVTDS 160 D Sbjct: 125 AVQKEIDY 132 >gi|119873120|ref|YP_931127.1| NADH dehydrogenase subunit I [Pyrobaculum islandicum DSM 4184] gi|119674528|gb|ABL88784.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum islandicum DSM 4184] Length = 159 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 37/125 (29%), Positives = 51/125 (40%), Gaps = 13/125 (10%) Query: 17 VGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + A + R F K + TI YP+EK RG L E+C +C +C ICPA Sbjct: 16 IDAISIAARNFVKPERITIYYPYEKLEYGRA-RGWIGLL-----VEKCTSCMMCARICPA 69 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 AI + P ID +CI C C + CP +A+ E +E+ Sbjct: 70 NAIKMYVAPNGKRYPG------IDYGRCIMCHFCIDVCPTEALFPTDIKELTWYDSKEML 123 Query: 136 YDKER 140 Y E Sbjct: 124 YTPEM 128 >gi|295097301|emb|CBK86391.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 180 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 54/128 (42%), Gaps = 10/128 (7%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 T +YP E FRG+ + ++CI C C CP+ A+T+E+ + + Sbjct: 15 TSSYPLEPIPVDKNFRGKPE-----HNPQQCIGCAACVNACPSNALTVETDLKTGE---- 65 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEI 152 + + ++ +CI+CG C+E CP AI +E A +++ L N + Sbjct: 66 -LAWQFNLGRCIFCGRCEEVCPTVAIRLSQEYELAVWKKEDFLQQSRFALCNCRVCKRPF 124 Query: 153 VRNIVTDS 160 D Sbjct: 125 AVQKEIDY 132 >gi|289804003|ref|ZP_06534632.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 154 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 10/129 (7%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T +YP E + FRG+ + ++CI C C CP+ A+T+E+ ++ Sbjct: 14 ATSSYPLEPIAVDKNFRGKPE-----HNPQQCIGCAACVNACPSNALTVETDLATNE--- 65 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 + + ++ +CI+CG C+E CP AI +E A +++ L N Sbjct: 66 --LAWQFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRP 123 Query: 152 IVRNIVTDS 160 D Sbjct: 124 FAVQKEIDY 132 >gi|320101197|ref|YP_004176789.1| NuoI NADH dehydrogenase I subunit I [Desulfurococcus mucosus DSM 2162] gi|319753549|gb|ADV65307.1| NuoI NADH dehydrogenase I, subunit I [Desulfurococcus mucosus DSM 2162] Length = 156 Score = 73.2 bits (178), Expect = 1e-11, Method: Composition-based stats. Identities = 35/121 (28%), Positives = 49/121 (40%), Gaps = 8/121 (6%) Query: 24 LRYFFKAKTTINYPFEKGST-SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 LRY K T P +P RG H L +C C +C+ +CPA +I + Sbjct: 10 LRYLLKRPYTRQVPRVDTPFKTPVTRGGHVL-----DMAKCTGCSMCQQVCPANSIDMVV 64 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG--PNFEFATETRQELYYDKER 140 + R ID+ KC +CGLC E CP +A+ +E T + L Sbjct: 65 VEGEYPQNPRKRFPRIDLNKCTFCGLCVEYCPFNALSMTTATGYELFTTDKSTLLKQPMD 124 Query: 141 L 141 L Sbjct: 125 L 125 >gi|153872085|ref|ZP_02001079.1| glutamate synthase small subunit [Beggiatoa sp. PS] gi|152071448|gb|EDN68920.1| glutamate synthase small subunit [Beggiatoa sp. PS] Length = 598 Score = 72.8 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 41/105 (39%), Gaps = 10/105 (9%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 L Y + T+ P E +P +RG H N E+CI C C IC AI + Sbjct: 10 ALSYLGREPVTL--PIEPRPAAPIYRGFHL-----NDWEKCIGCGTCATICDNYAINMVE 62 Query: 83 GPR---CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 + R ID +C +C LC + CP +I + Sbjct: 63 IKDLPSDPIKGIKPRRPAIDYGRCCWCALCVDICPTGSISLSREY 107 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 2/24 (8%) Query: 101 IKCIYCGLCQEACPVDAIVEGPNF 124 +CI CG+C EACP + + P + Sbjct: 180 SRCIQCGMCHEACPTN--MHAPEY 201 Score = 35.5 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 16/47 (34%), Gaps = 1/47 (2%) Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 PR R + KCI CG C C AI + ++ Sbjct: 24 EPRPAAPIYRGFHLNDW-EKCIGCGTCATICDNYAINMVEIKDLPSD 69 >gi|126459132|ref|YP_001055410.1| NADH dehydrogenase subunit I [Pyrobaculum calidifontis JCM 11548] gi|126248853|gb|ABO07944.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum calidifontis JCM 11548] Length = 155 Score = 72.8 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 40/125 (32%), Positives = 52/125 (41%), Gaps = 13/125 (10%) Query: 17 VGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 VGA + R F K + TI YP+EK R RG L E+C +C LC ICP Sbjct: 11 VGALRVAARNFVKPERITIYYPYEKLDY-GRMRGWIGLW-----TEKCTSCMLCARICPT 64 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 AI + P ID +CI C C + CP DA+ E +E+ Sbjct: 65 NAIKMYLAPNNKRYPG------IDYGRCIMCHFCIDICPTDALYPTDIKELTWYDYREMV 118 Query: 136 YDKER 140 Y + Sbjct: 119 YTPDM 123 >gi|187251535|ref|YP_001876017.1| ech hydrogenase subunit F [Elusimicrobium minutum Pei191] gi|186971695|gb|ACC98680.1| Ech hydrogenase subunit F [Elusimicrobium minutum Pei191] Length = 140 Score = 72.8 bits (177), Expect = 1e-11, Method: Composition-based stats. Identities = 36/128 (28%), Positives = 53/128 (41%), Gaps = 15/128 (11%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + A + F +TI YP++K T+ +R E CI C +C CPA Sbjct: 5 LKALKEVINNLFTKHSTIEYPYKKIETAETYRARIKFT-----PENCIGCNICVRNCPAN 59 Query: 77 AITIES----------GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 AI I +R + ID+ +CIYC C E+CP A+ FE Sbjct: 60 AIKITQINPQDKPQALEGGKVIPAKRKFKCVIDLGRCIYCAQCVESCPKKALYASTEFEL 119 Query: 127 ATETRQEL 134 A +++L Sbjct: 120 AAFDKKDL 127 >gi|262043974|ref|ZP_06017058.1| formate hydrogenlyase subunit 6 [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259038700|gb|EEW39887.1| formate hydrogenlyase subunit 6 [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 180 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 10/129 (7%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T YP E FRG+ ++CI C C CP+ A+T+E + Sbjct: 14 ATHAYPLEPMPVDKNFRGKPEHT-----PQQCIGCAACVNACPSNALTVEIDLATNQ--- 65 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 + + ++ +CI+CG C+E CP AI P +E A +++ + + + Sbjct: 66 --LAWQFNLGRCIFCGRCEEVCPTAAIKLSPEYELAVWKKEDFLQQSRFAICHCRECQRP 123 Query: 152 IVRNIVTDS 160 D Sbjct: 124 FAVQKEIDY 132 >gi|260892455|ref|YP_003238552.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ammonifex degensii KC4] gi|260864596|gb|ACX51702.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ammonifex degensii KC4] Length = 127 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 33/115 (28%), Positives = 42/115 (36%), Gaps = 6/115 (5%) Query: 19 AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78 + LR F T YPFE+ RG+ E C C CE CP AI Sbjct: 1 MLGVVLRNLFTGPVTRRYPFERRQYFDGSRGKLLFH-----PEYCEFCGECERACPTGAI 55 Query: 79 TIESGPRCHDGTRRTVRYD-IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 +++ V D KCI+CG C EACP AI ++ Sbjct: 56 ELDTAWDTRRQDYSIVWLRRYDPFKCIFCGNCVEACPYGAIELAEEPAAPGYRKE 110 >gi|288933890|ref|YP_003437949.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Klebsiella variicola At-22] gi|288888619|gb|ADC56937.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Klebsiella variicola At-22] Length = 180 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 52/129 (40%), Gaps = 10/129 (7%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T YP E FRG+ ++CI C C CP+ A+T+E+ + Sbjct: 14 ATHAYPLEPMPVDKNFRGKPEHT-----PQQCIGCAACVNACPSNALTVETDLTTNQ--- 65 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 + + ++ +CI+CG C+E CP AI P +E A +++ + + + Sbjct: 66 --LAWQFNLGRCIFCGRCEEVCPTAAIKLSPEYELAVWKKEDFLQQSRFAICHCRECQRP 123 Query: 152 IVRNIVTDS 160 D Sbjct: 124 FAVQKEIDY 132 >gi|290511029|ref|ZP_06550398.1| formate hydrogenlyase complex iron-sulfur subunit hycF [Klebsiella sp. 1_1_55] gi|289776022|gb|EFD84021.1| formate hydrogenlyase complex iron-sulfur subunit hycF [Klebsiella sp. 1_1_55] Length = 180 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 52/129 (40%), Gaps = 10/129 (7%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T YP E FRG+ ++CI C C CP+ A+T+E+ + Sbjct: 14 ATHAYPLEPMPVDKNFRGKPEHT-----PQQCIGCAACVNACPSNALTVETDLTTNQ--- 65 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 + + ++ +CI+CG C+E CP AI P +E A +++ + + + Sbjct: 66 --LAWQFNLGRCIFCGRCEEVCPTAAIKLSPEYELAVWKKEDFLQQSRFAICHCRECQRP 123 Query: 152 IVRNIVTDS 160 D Sbjct: 124 FAVQKEIDY 132 >gi|238896177|ref|YP_002920913.1| formate hydrogenlyase complex iron-sulfur subunit [Klebsiella pneumoniae NTUH-K2044] gi|238548495|dbj|BAH64846.1| hydrogenase 4 Fe-S subunit [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 180 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 10/129 (7%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T YP E FRG+ ++CI C C CP+ A+T+E + Sbjct: 14 ATHAYPLEPMPVDKNFRGKPEHT-----PQQCIGCAACVNACPSNALTVEIDLAANQ--- 65 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 + + ++ +CI+CG C+E CP AI P +E A +++ + + + Sbjct: 66 --LAWQFNLGRCIFCGRCEEVCPTAAIKLSPEYELAVWKKEDFLQQSRFAICHCRECQRP 123 Query: 152 IVRNIVTDS 160 D Sbjct: 124 FAVQKEIDY 132 >gi|145590888|ref|YP_001152890.1| NADH dehydrogenase subunit I [Pyrobaculum arsenaticum DSM 13514] gi|145282656|gb|ABP50238.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum arsenaticum DSM 13514] Length = 154 Score = 72.4 bits (176), Expect = 2e-11, Method: Composition-based stats. Identities = 38/125 (30%), Positives = 52/125 (41%), Gaps = 13/125 (10%) Query: 17 VGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + A + + F K + TI YP+EK R RG L E+C +C LC ICP Sbjct: 11 IDAMAVAAKNFAKPERITIYYPYEKLEY-VRMRGWIGLW-----TEKCTSCMLCARICPT 64 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 AI + P ID +CI C C + CP DA+ E A +E+ Sbjct: 65 NAIKMYLAPNNKRYPG------IDYGRCIMCHFCIDVCPTDALYGTGIKELAWYDYKEMI 118 Query: 136 YDKER 140 Y + Sbjct: 119 YTPDM 123 >gi|152971579|ref|YP_001336688.1| formate hydrogenlyase complex iron-sulfur subunit [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|330008024|ref|ZP_08306140.1| 4Fe-4S binding domain protein [Klebsiella sp. MS 92-3] gi|150956428|gb|ABR78458.1| hydrogenase 4 Fe-S subunit [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|328535255|gb|EGF61747.1| 4Fe-4S binding domain protein [Klebsiella sp. MS 92-3] Length = 180 Score = 72.1 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 10/129 (7%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T YP E FRG+ ++CI C C CP+ A+T+E + Sbjct: 14 ATHAYPLEPMPVDKNFRGKPEHT-----PQQCIGCAACVNACPSNALTVEIDLATNQ--- 65 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 + + ++ +CI+CG C+E CP AI P +E A +++ + + + Sbjct: 66 --LAWQFNLGRCIFCGRCEEVCPTAAIKLSPEYELAVWKKEDFLQQSRFAICHCRECQRP 123 Query: 152 IVRNIVTDS 160 D Sbjct: 124 FAVQKEIDY 132 >gi|14591231|ref|NP_143308.1| NADH-plastoquinone oxidoreductase subunit [Pyrococcus horikoshii OT3] gi|3257864|dbj|BAA30547.1| 136aa long hypothetical NADH-plastoquinone oxidoreductase subunit [Pyrococcus horikoshii OT3] Length = 136 Score = 72.1 bits (175), Expect = 2e-11, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 17/120 (14%) Query: 20 FFLCLRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78 ++ FK+ T +P E FRG +C+ C++C +CPA Sbjct: 7 LPTVIKNLFKSPATNPFPKTEPIPVPDNFRGRIVYNVD-----KCVGCRMCVTVCPAGVF 61 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR--QELYY 136 R + + +C++C C + CP A+ F A+ + ++ Y Sbjct: 62 VYIPEIR---------KVALWTGRCVFCKQCVDVCPTGALQMSDEFLLASYDKYDEKFIY 112 >gi|15803011|ref|NP_289041.1| hydrogenase 4 subunit H [Escherichia coli O157:H7 EDL933] gi|15832604|ref|NP_311377.1| hydrogenase 4 subunit H [Escherichia coli O157:H7 str. Sakai] gi|168748456|ref|ZP_02773478.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str. EC4113] gi|168756257|ref|ZP_02781264.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str. EC4401] gi|168761094|ref|ZP_02786101.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str. EC4501] gi|168768577|ref|ZP_02793584.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str. EC4486] gi|168773601|ref|ZP_02798608.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str. EC4196] gi|168778451|ref|ZP_02803458.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str. EC4076] gi|168787831|ref|ZP_02812838.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str. EC869] gi|168798856|ref|ZP_02823863.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str. EC508] gi|195936631|ref|ZP_03082013.1| hydrogenase 4 subunit H [Escherichia coli O157:H7 str. EC4024] gi|208807802|ref|ZP_03250139.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str. EC4206] gi|208813770|ref|ZP_03255099.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str. EC4045] gi|208820809|ref|ZP_03261129.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str. EC4042] gi|209399054|ref|YP_002271957.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str. EC4115] gi|217327102|ref|ZP_03443185.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str. TW14588] gi|254794433|ref|YP_003079270.1| hydrogenase 4 subunit H [Escherichia coli O157:H7 str. TW14359] gi|261223079|ref|ZP_05937360.1| hydrogenase 4, Fe-S subunit [Escherichia coli O157:H7 str. FRIK2000] gi|261259369|ref|ZP_05951902.1| hydrogenase 4, Fe-S subunit [Escherichia coli O157:H7 str. FRIK966] gi|291283708|ref|YP_003500526.1| Iron-sulfur cluster-binding protein [Escherichia coli O55:H7 str. CB9615] gi|12516873|gb|AAG57598.1|AE005478_8 hydrogenase 4 Fe-S subunit [Escherichia coli O157:H7 str. EDL933] gi|13362820|dbj|BAB36773.1| hydrogenase 4 Fe-S subunit [Escherichia coli O157:H7 str. Sakai] gi|187770726|gb|EDU34570.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str. EC4196] gi|188017123|gb|EDU55245.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str. EC4113] gi|189003184|gb|EDU72170.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str. EC4076] gi|189356628|gb|EDU75047.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str. EC4401] gi|189362200|gb|EDU80619.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str. EC4486] gi|189368360|gb|EDU86776.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str. EC4501] gi|189372312|gb|EDU90728.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str. EC869] gi|189378647|gb|EDU97063.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str. EC508] gi|208727603|gb|EDZ77204.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str. EC4206] gi|208735047|gb|EDZ83734.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str. EC4045] gi|208740932|gb|EDZ88614.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str. EC4042] gi|209160454|gb|ACI37887.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str. EC4115] gi|209763628|gb|ACI80126.1| hydrogenase 4 Fe-S subunit [Escherichia coli] gi|209763630|gb|ACI80127.1| hydrogenase 4 Fe-S subunit [Escherichia coli] gi|209763632|gb|ACI80128.1| hydrogenase 4 Fe-S subunit [Escherichia coli] gi|209763634|gb|ACI80129.1| hydrogenase 4 Fe-S subunit [Escherichia coli] gi|209763636|gb|ACI80130.1| hydrogenase 4 Fe-S subunit [Escherichia coli] gi|217319469|gb|EEC27894.1| iron-sulfur cluster-binding protein [Escherichia coli O157:H7 str. TW14588] gi|254593833|gb|ACT73194.1| hydrogenase 4, Fe-S subunit [Escherichia coli O157:H7 str. TW14359] gi|290763581|gb|ADD57542.1| Iron-sulfur cluster-binding protein [Escherichia coli O55:H7 str. CB9615] gi|320188820|gb|EFW63479.1| Hydrogenase-4 component H [Escherichia coli O157:H7 str. EC1212] gi|320646274|gb|EFX15201.1| hydrogenase 4 subunit H [Escherichia coli O157:H- str. 493-89] gi|320657165|gb|EFX24974.1| hydrogenase 4 subunit H [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662771|gb|EFX30103.1| hydrogenase 4 subunit H [Escherichia coli O55:H7 str. USDA 5905] gi|320667575|gb|EFX34490.1| hydrogenase 4 subunit H [Escherichia coli O157:H7 str. LSU-61] gi|326340283|gb|EGD64087.1| Hydrogenase-4 component H [Escherichia coli O157:H7 str. 1125] gi|326344968|gb|EGD68712.1| Hydrogenase-4 component H [Escherichia coli O157:H7 str. 1044] Length = 181 Score = 72.1 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 36/138 (26%), Positives = 52/138 (37%), Gaps = 13/138 (9%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + +R T+ YPF SP FRG+ L A CP Sbjct: 1 MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACGACA-----CACPT 52 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A+TI++ + + + + + +CIYCG C+E CP AI NFE + +LY Sbjct: 53 NALTIQTDDQQNS-----RTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 107 Query: 136 YDKERLLNNGDRWESEIV 153 L R E Sbjct: 108 TRATFHLQRCSRCERPFA 125 >gi|18977808|ref|NP_579165.1| NADH-plastoquinone oxidoreductase subunit [Pyrococcus furiosus DSM 3638] gi|18893557|gb|AAL81560.1| mbh14 iron-sulfur protein (like HycF, EchF, CooX) [Pyrococcus furiosus DSM 3638] Length = 139 Score = 72.1 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 49/145 (33%), Gaps = 18/145 (12%) Query: 20 FFLCLRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78 ++ FK T +P E FRG+ +C+ C++C +CPA Sbjct: 7 LPTVIKNLFKKPATNPFPKTEPVPVPEDFRGKLVYNVD-----KCVGCRMCVTVCPAGVF 61 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE--LYY 136 R + + + +C+ C C + CP A+ F A+ + + L Y Sbjct: 62 VYLPEIR---------KVTLWIGRCVMCKQCVDVCPTAALQMSDEFLLASYDKYDAKLIY 112 Query: 137 -DKERLLNNGDRWESEIVRNIVTDS 160 E + + E + Sbjct: 113 LTPEEAEDIKKKLEEANKAKAEKQA 137 >gi|21673601|ref|NP_661666.1| NADH dehydrogenase I, 23 kDa subunit [Chlorobium tepidum TLS] gi|21646715|gb|AAM72008.1| NADH dehydrogenase I, 23 kDA subunit [Chlorobium tepidum TLS] Length = 216 Score = 72.1 bits (175), Expect = 3e-11, Method: Composition-based stats. Identities = 42/170 (24%), Positives = 60/170 (35%), Gaps = 39/170 (22%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKT--------------------TINYPFEK 40 M + N+ + + L++FF A T+ YP E Sbjct: 1 MSEYFSNIKTS-VTTIATGMGITLKHFFNAVKRKGDAGIDDADYFRQVDGLCTLQYPKEA 59 Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH------------- 87 T P G + L N CI CK CE CP + ITIE+ Sbjct: 60 IPTPP--HGRYRLYCNIND---CIGCKQCERACPVECITIETIKTTSDDLEACGKTSGGQ 114 Query: 88 DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 +DID+ KC+ CG+CQ CP D + P +F+ + Y Sbjct: 115 QKRMWVPVFDIDLAKCMTCGICQSVCPTDCLYHTPVADFSEFDVSNMMYH 164 >gi|320640992|gb|EFX10476.1| hydrogenase 4 subunit H [Escherichia coli O157:H7 str. G5101] Length = 181 Score = 71.7 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 36/138 (26%), Positives = 52/138 (37%), Gaps = 13/138 (9%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + +R T+ YPF SP FRG+ L A CP Sbjct: 1 MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACGACA-----CACPT 52 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A+TI++ + + + + + +CIYCG C+E CP AI NFE + +LY Sbjct: 53 NALTIQTDDQQNS-----RTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 107 Query: 136 YDKERLLNNGDRWESEIV 153 L R E Sbjct: 108 TRATFHLQRCSRCERPFA 125 >gi|148791383|gb|ABR12483.1| hydrogenase 4 Fe-S subunit [Klebsiella oxytoca] Length = 180 Score = 71.7 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 49/104 (47%), Gaps = 10/104 (9%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T +YP E FRG+ + ++CI C C CP+ A+T+E+ + Sbjct: 14 ATHSYPLEPMPVDKNFRGKPE-----HNPQQCIGCAACVNACPSNALTVETDLAANQ--- 65 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 + + ++ +CI+CG C+E CP AI +E A +++ Sbjct: 66 --LGWQFNLGRCIFCGRCEEVCPTAAIRLSQEYELAVWKKEDFL 107 >gi|296242763|ref|YP_003650250.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Thermosphaera aggregans DSM 11486] gi|296095347|gb|ADG91298.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermosphaera aggregans DSM 11486] Length = 160 Score = 71.7 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 31/116 (26%), Positives = 45/116 (38%), Gaps = 8/116 (6%) Query: 20 FFLCLRYFFKAKTTINYPFEKGST-SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78 L++ K T P + + RG H L +C C +C+ +CPA I Sbjct: 6 LAKSLKHLAKNPYTRLVPRKSSPFKTDSIRGAHLL-----DMSKCTGCSMCQQVCPAACI 60 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN--FEFATETRQ 132 + + R ID KC +CGLC E CPV A+ +E T + Sbjct: 61 DMVVVEGDYSQNPRKRFPRIDHSKCTFCGLCVEYCPVAALSMTTVTGYELFTTNKD 116 >gi|168262038|ref|ZP_02684011.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205349072|gb|EDZ35703.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 180 Score = 71.7 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 10/129 (7%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T +YP E + FRG+ + ++CI C C CP+ A+T+E+ ++ Sbjct: 14 ATSSYPLEPIAVDKNFRGKPE-----HNPQQCIGCAACVNACPSNALTVETDLATNE--- 65 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 + + ++ +CI+CG C+E CP AI +E A +++ L N Sbjct: 66 --LAWQFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRP 123 Query: 152 IVRNIVTDS 160 D Sbjct: 124 FAVQKEIDY 132 >gi|324497291|gb|ADY39446.1| formate hydrogenlyase complex iron-sulfur subunit [bacterium enrichment culture clone P24-9H] Length = 180 Score = 71.7 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 50/103 (48%), Gaps = 10/103 (9%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 T +YP E FRG+ + ++CI C C CP+ A+T+E+ + + Sbjct: 15 TSSYPLEPMPVDKNFRGKPE-----HNPQQCIGCAACVNACPSNALTVETDLKTGE---- 65 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 + + ++ +CI+CG C+E CP AI +E A +++ Sbjct: 66 -LAWQFNLGRCIFCGRCEEVCPTVAIRLSQEYELAVWKKEDFL 107 >gi|239907412|ref|YP_002954153.1| iron-sulfur binding protein [Desulfovibrio magneticus RS-1] gi|239797278|dbj|BAH76267.1| iron-sulfur binding protein [Desulfovibrio magneticus RS-1] Length = 167 Score = 71.7 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 34/142 (23%), Positives = 53/142 (37%), Gaps = 17/142 (11%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE--ERCIACKLCE 70 LK + + F + + T+ YP ++ FRG L + RC+AC C Sbjct: 14 LKSLFVGLGITGKAFCQPQVTVIYPKQEVDNLSTFRGHVELVGKEDDPSVPRCVACGACV 73 Query: 71 AICPAQAIT---------------IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 CP+ +T + GP G++ +D C CG C + CPV Sbjct: 74 KACPSDCLTILCPVPAKEGQEDAPMAMGPAPQKGSKTPGAVIVDFSLCSLCGQCAKTCPV 133 Query: 116 DAIVEGPNFEFATETRQELYYD 137 D++ N R+E D Sbjct: 134 DSLRFSDNPYMVALDRKEFRID 155 >gi|207109996|ref|ZP_03244158.1| NADH dehydrogenase subunit I [Helicobacter pylori HPKX_438_CA4C1] Length = 138 Score = 71.7 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 33/73 (45%), Positives = 42/73 (57%), Gaps = 1/73 (1%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCI C LCE IC + I I + D ++ Y I++ +CIYCGLC E CP AIV Sbjct: 2 ERCIGCGLCEKICTSNCIRIITHK-GEDNRKKIDSYTINLGRCIYCGLCAEVCPELAIVM 60 Query: 121 GPNFEFATETRQE 133 G FE A+ R + Sbjct: 61 GNRFENASTQRSQ 73 >gi|168235880|ref|ZP_02660938.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194738376|ref|YP_002115801.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194713878|gb|ACF93099.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197290888|gb|EDY30242.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 180 Score = 71.7 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 10/129 (7%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T +YP E + FRG+ + ++CI C C CP+ A+T+E+ ++ Sbjct: 14 ATSSYPLEPIAVDKNFRGKPE-----HNPQQCIGCAACVNACPSNALTVETDLATNE--- 65 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 + + ++ +CI+CG C+E CP AI +E A +++ L N Sbjct: 66 --LAWQFNLSRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRP 123 Query: 152 IVRNIVTDS 160 D Sbjct: 124 FAVQKEIDY 132 >gi|293415751|ref|ZP_06658394.1| hydrogenase 4 subunit H [Escherichia coli B185] gi|291433399|gb|EFF06378.1| hydrogenase 4 subunit H [Escherichia coli B185] Length = 181 Score = 71.7 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 36/138 (26%), Positives = 52/138 (37%), Gaps = 13/138 (9%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + +R T+ YPF SP FRG+ L A CP Sbjct: 1 MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLMLSQCIACGACA-----CACPT 52 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A+TI++ + + + + + +CIYCG C+E CP AI NFE + +LY Sbjct: 53 NALTIQTDDQQNS-----RTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 107 Query: 136 YDKERLLNNGDRWESEIV 153 L R E Sbjct: 108 TRATFHLQRCSRCERPFA 125 >gi|149194129|ref|ZP_01871227.1| formate hydrogenlyase complex iron-sulfur subunit [Caminibacter mediatlanticus TB-2] gi|149136082|gb|EDM24560.1| formate hydrogenlyase complex iron-sulfur subunit [Caminibacter mediatlanticus TB-2] Length = 179 Score = 71.7 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 40/131 (30%), Positives = 55/131 (41%), Gaps = 19/131 (14%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T +YPF FRG+ E+CI C C CP AI + Sbjct: 15 VTYDYPFGDYEVPDGFRGKP-----HYEYEKCIGCAACAIACPPNAINVSYLKGEDK--- 66 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 +++ D +CI+C C+E CP AI FE A ++KE LL G E E Sbjct: 67 --SKWEFDCGRCIFCARCEEVCPTGAIYLTKEFENAVR------FNKEDLLQIG---ELE 115 Query: 152 IVRNIVTDSPY 162 +VR V + P+ Sbjct: 116 VVRCRVCNKPF 126 >gi|322614333|gb|EFY11264.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322621602|gb|EFY18455.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624463|gb|EFY21296.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628794|gb|EFY25577.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633479|gb|EFY30221.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635945|gb|EFY32653.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639653|gb|EFY36338.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646836|gb|EFY43339.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322654784|gb|EFY51103.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322659004|gb|EFY55257.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664429|gb|EFY60623.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668322|gb|EFY64479.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673698|gb|EFY69799.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677759|gb|EFY73822.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322681411|gb|EFY77443.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322683813|gb|EFY79823.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323193798|gb|EFZ79001.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200268|gb|EFZ85350.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323203229|gb|EFZ88258.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205524|gb|EFZ90489.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210814|gb|EFZ95687.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216338|gb|EGA01065.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221086|gb|EGA05517.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323226907|gb|EGA11089.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323230809|gb|EGA14927.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234840|gb|EGA18926.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238879|gb|EGA22929.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241579|gb|EGA25610.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248274|gb|EGA32210.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323251142|gb|EGA35015.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323256025|gb|EGA39763.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323263160|gb|EGA46698.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323264335|gb|EGA47841.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271162|gb|EGA54590.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 180 Score = 71.7 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 10/129 (7%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T +YP E + FRG+ + ++CI C C CP+ A+T+E+ ++ Sbjct: 14 ATSSYPLEPIAVDKNFRGKPE-----HNPQQCIGCAACVNACPSNALTVETDLATNE--- 65 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 + + ++ +CI+CG C+E CP AI +E A +++ L N Sbjct: 66 --LAWQFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRP 123 Query: 152 IVRNIVTDS 160 D Sbjct: 124 FAVQKEIDY 132 >gi|254168032|ref|ZP_04874880.1| 4Fe-4S binding domain protein [Aciduliprofundum boonei T469] gi|254168105|ref|ZP_04874952.1| 4Fe-4S binding domain protein [Aciduliprofundum boonei T469] gi|289596051|ref|YP_003482747.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Aciduliprofundum boonei T469] gi|197622871|gb|EDY35439.1| 4Fe-4S binding domain protein [Aciduliprofundum boonei T469] gi|197623075|gb|EDY35642.1| 4Fe-4S binding domain protein [Aciduliprofundum boonei T469] gi|289533838|gb|ADD08185.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Aciduliprofundum boonei T469] Length = 160 Score = 71.7 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 42/129 (32%), Positives = 59/129 (45%), Gaps = 14/129 (10%) Query: 15 EFVGAFFLCLRYFFKAKTTINYPFEKGS-------TSPRFRGEHALRRYPNGEERCIACK 67 V F LR+ KA T+ YP++K + + R+RG H N E CI C+ Sbjct: 2 SIVKPFK-ALRHLSKAPHTVKYPYQKHTDIEGLELPTERYRGFH-----SNNIETCIGCQ 55 Query: 68 LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 LC +CPA AIT + R ID +C YCG C + CP +++ P +E Sbjct: 56 LCSKVCPAAAITYVKIENSGKKGLKW-RPVIDYGRCCYCGFCTDICPTKSLILTPRYELV 114 Query: 128 TETRQELYY 136 TE E + Sbjct: 115 TENIDEFKF 123 >gi|16761625|ref|NP_457242.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16766154|ref|NP_461769.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29143109|ref|NP_806451.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|161615751|ref|YP_001589716.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167550312|ref|ZP_02344069.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167994152|ref|ZP_02575244.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168230909|ref|ZP_02655967.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168464026|ref|ZP_02697943.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168820464|ref|ZP_02832464.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194471670|ref|ZP_03077654.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|198243506|ref|YP_002216820.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388107|ref|ZP_03214719.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205353792|ref|YP_002227593.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207858111|ref|YP_002244762.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213052198|ref|ZP_03345076.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213426141|ref|ZP_03358891.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213583851|ref|ZP_03365677.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213610077|ref|ZP_03369903.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213648117|ref|ZP_03378170.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289823876|ref|ZP_06543482.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25324256|pir||AD0846 formate hydrogenlyase chain 6 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16421394|gb|AAL21728.1| hydrogenase 3 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16503926|emb|CAD05955.1| formate hydrogenlyase subunit 6 [Salmonella enterica subsp. enterica serovar Typhi] gi|29138742|gb|AAO70311.1| formate hydrogenlyase subunit 6 [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|161365115|gb|ABX68883.1| hypothetical protein SPAB_03542 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194458034|gb|EDX46873.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|195633645|gb|EDX52059.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197938022|gb|ACH75355.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605205|gb|EDZ03750.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205273573|emb|CAR38560.1| formate hydrogenlyase subunit 6 [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205324749|gb|EDZ12588.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205327931|gb|EDZ14695.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205334623|gb|EDZ21387.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205342812|gb|EDZ29576.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206709914|emb|CAR34268.1| formate hydrogenlyase subunit 6 [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261247984|emb|CBG25817.1| formate hydrogenlyase subunit 6 [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994971|gb|ACY89856.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159408|emb|CBW18926.1| formate hydrogenlyase subunit 6 [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913866|dbj|BAJ37840.1| formate hydrogenlyase iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087251|emb|CBY97016.1| NADH dehydrogenase [ubiquinone] iron-sulfur protein 8, mitochondrial NADH-ubiquinone oxidoreductase 23 kDa subunit; Complex I-23kD; CI-23kD; Flags: Precursor [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321223401|gb|EFX48467.1| Formate hydrogenlyase complex 3 iron-sulfur protein [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323131199|gb|ADX18629.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326624579|gb|EGE30924.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628900|gb|EGE35243.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332989720|gb|AEF08703.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 180 Score = 71.7 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 10/129 (7%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T +YP E + FRG+ + ++CI C C CP+ A+T+E+ ++ Sbjct: 14 ATSSYPLEPIAVDKNFRGKPE-----HNPQQCIGCAACVNACPSNALTVETDLATNE--- 65 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 + + ++ +CI+CG C+E CP AI +E A +++ L N Sbjct: 66 --LAWQFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRP 123 Query: 152 IVRNIVTDS 160 D Sbjct: 124 FAVQKEIDY 132 >gi|257077083|ref|ZP_05571444.1| NADH dehydrogenase subunit I [Ferroplasma acidarmanus fer1] Length = 168 Score = 71.7 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 42/142 (29%), Positives = 55/142 (38%), Gaps = 23/142 (16%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + + +Y F T YP +KG RFR L E C+ C LC ICP Sbjct: 24 LKSMLNMGKYVFTKPVTTQYPEDKGKIPERFRFRIFLV-----PEACVGCTLCSKICPNH 78 Query: 77 AITIES-----------------GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 +I +E G R + +R + D++ C C C+E CP DAI Sbjct: 79 SIKMEHWDLDRTGLEDNVVQTARGDRKNLQNKRNIYPDVNFGTCTVCRQCEEICPTDAIY 138 Query: 120 EGPNFEFATETRQELYYDKERL 141 FE A TR Y E L Sbjct: 139 LTHQFEDA-RTRNSFTYSPEEL 159 >gi|212224746|ref|YP_002307982.1| NADH-plastoquinone oxidoreductase subunit [Thermococcus onnurineus NA1] gi|212009703|gb|ACJ17085.1| membrane bound hydrogenase, 4Fe-4S cluster-binding subunit [Thermococcus onnurineus NA1] Length = 152 Score = 71.7 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 40/110 (36%), Gaps = 15/110 (13%) Query: 22 LCLRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80 LR FK T +P E FRG+ +C+ C++C +CPA Sbjct: 9 TVLRNMFKKPATNLFPATEPVPVPDNFRGQLKYNVD-----KCVGCRMCVTVCPAGVFVF 63 Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 R + + +C+YC C + CP A+ F A+ Sbjct: 64 LPEIR---------KVALWTARCVYCSQCVDVCPTAALQMSDEFLLASYN 104 >gi|167045509|gb|ABZ10162.1| putative 4Fe-4S binding domain protein [uncultured marine microorganism HF4000_APKG10H11] Length = 160 Score = 71.7 bits (174), Expect = 4e-11, Method: Composition-based stats. Identities = 34/136 (25%), Positives = 49/136 (36%), Gaps = 20/136 (14%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 K + + ++ F + T+ YP+E + +RG L E CI C LCE C Sbjct: 13 KNIIQPIIVGFKHIFSKRHTMKYPYEYIPPTKNYRGRIEL-----DMETCINCMLCEKYC 67 Query: 74 PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP--------VDAIVEGPNFE 125 P AI ID KC +CG C CP + Sbjct: 68 PDHAIQTYYVDGKKFPG-------IDFGKCCFCGYCVWVCPPNIRKGGEEVCLSLNEEHS 120 Query: 126 FATETRQELYYDKERL 141 F + + EL Y ++L Sbjct: 121 FPSFDKAELIYPPQKL 136 >gi|218884333|ref|YP_002428715.1| Hydrogenase 4 Fe-S subunit [Desulfurococcus kamchatkensis 1221n] gi|218765949|gb|ACL11348.1| Hydrogenase 4 Fe-S subunit [Desulfurococcus kamchatkensis 1221n] Length = 171 Score = 71.3 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 12/105 (11%) Query: 31 KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT 90 + T YPFE+ +P FRG+ + +CI C C CP A+ + Sbjct: 19 RVTRKYPFEEPLVTPDFRGKIEI-----NASKCIGCGACVNACPPNALQLIEDKEK---- 69 Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 + + +CI+C C + CP AI FE AT+ +LY Sbjct: 70 ---LVLRYFIGRCIFCWRCIDVCPTGAIKGTREFELATDDISDLY 111 >gi|296241799|ref|YP_003649286.1| NADH dehydrogenase subunit I [Thermosphaera aggregans DSM 11486] gi|296094383|gb|ADG90334.1| NADH dehydrogenase subunit I [Thermosphaera aggregans DSM 11486] Length = 173 Score = 71.3 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 33/107 (30%), Positives = 46/107 (42%), Gaps = 12/107 (11%) Query: 31 KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT 90 + T YP+E+ SP FRG + E +CI C C CP A+ + S Sbjct: 19 RVTKKYPYEEPLVSPDFRGLIEI-----DENKCIGCGACVNACPPNALQLISDKDT---- 69 Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 + +CI+C C + CPV AI FE AT+ +LY Sbjct: 70 ---TVIRYFIGRCIFCWRCVDVCPVGAIKGTRKFELATDDASDLYVH 113 >gi|303247497|ref|ZP_07333769.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio fructosovorans JJ] gi|302491193|gb|EFL51085.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio fructosovorans JJ] Length = 184 Score = 71.3 bits (173), Expect = 4e-11, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 53/141 (37%), Gaps = 16/141 (11%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE--RCIACKLCE 70 LK V + + + T+ YP E+ FRG L RC+AC C Sbjct: 15 LKSLVIGLGVTGKALCEPGVTVIYPKEEVDNLATFRGHVELIGKDEDPAVARCVACGACV 74 Query: 71 AICPAQAITIES--------------GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 CP+ I++ GP G++ ++ +D C CG C ACPVD Sbjct: 75 KACPSNCISVLCPVPVKEGEADTGKLGPAPQKGSKTPAKFIVDFSLCSLCGQCARACPVD 134 Query: 117 AIVEGPNFEFATETRQELYYD 137 ++ + R+ ++ Sbjct: 135 SLRFCHDAYMVAFDRKAFEFE 155 >gi|284006928|emb|CBA72199.1| hydrogenase-4 component H [Arsenophonus nasoniae] Length = 180 Score = 71.3 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 48/103 (46%), Gaps = 10/103 (9%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T +YP FRG+ + ++CI C C CP+ A+T E + Sbjct: 14 VTEDYPLTPIKVDKNFRGKP-----QHNPQQCIGCGACVNACPSNALTAEIDL-----PK 63 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134 + + +++ +CI+CG C+E CP AI +E A +++L Sbjct: 64 GQLFWQLNLGRCIFCGRCEEVCPTAAIRLSQEYELAVWRKEDL 106 >gi|161502107|ref|YP_001569219.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863454|gb|ABX20077.1| hypothetical protein SARI_00124 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 180 Score = 71.3 bits (173), Expect = 5e-11, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 10/129 (7%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T +YP E + FRG+ + ++CI C C CP+ A+T+E+ ++ Sbjct: 14 ATSSYPLEPIAVDKNFRGKPE-----HNPQQCIGCAACVNACPSNALTVETDLATNE--- 65 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 + + ++ +CI+CG C+E CP AI +E A +++ L N Sbjct: 66 --LAWQFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRP 123 Query: 152 IVRNIVTDS 160 D Sbjct: 124 FAVQKEIDY 132 >gi|82778087|ref|YP_404436.1| formate hydrogenlyase complex iron-sulfur subunit [Shigella dysenteriae Sd197] gi|309786197|ref|ZP_07680825.1| formate hydrogenlyase subunit 6 [Shigella dysenteriae 1617] gi|81242235|gb|ABB62945.1| probable iron-sulfur protein of hydrogenase 3 [Shigella dysenteriae Sd197] gi|308925942|gb|EFP71421.1| formate hydrogenlyase subunit 6 [Shigella dysenteriae 1617] Length = 180 Score = 70.9 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 10/129 (7%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T +YP E + FRG+ ++CI C C CP+ A+T+E+ + Sbjct: 14 ATSSYPLEPIAVDKNFRGKPE-----QNPQQCIGCAACVNACPSNALTVETDLATGE--- 65 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 + ++ ++ +CI+CG C+E CP AI +E A +++ L N Sbjct: 66 --LVWEFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRP 123 Query: 152 IVRNIVTDS 160 D Sbjct: 124 FAVQKEIDY 132 >gi|62181351|ref|YP_217768.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62128984|gb|AAX66687.1| hydrogenase 3, putative quinone oxidoreductase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322715834|gb|EFZ07405.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 180 Score = 70.9 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 10/129 (7%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T +YP E + FRG+ + ++CI C C CP+ A+T+E+ ++ Sbjct: 14 ATSSYPLEPIAVDKNFRGKPE-----HNPQQCIGCAACVNACPSNALTVETSLATNE--- 65 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 + + ++ +CI+CG C+E CP AI +E A +++ L N Sbjct: 66 --LAWQFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRP 123 Query: 152 IVRNIVTDS 160 D Sbjct: 124 FAVQKEIDY 132 >gi|160902350|ref|YP_001567931.1| putative oxidoreductase [Petrotoga mobilis SJ95] gi|160359994|gb|ABX31608.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Petrotoga mobilis SJ95] Length = 612 Score = 70.9 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 43/108 (39%), Gaps = 13/108 (12%) Query: 23 CLRYFFKAKTTINYPFE-----KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA 77 +Y K T+ P E S R+RG H N E+CI C C ICP A Sbjct: 14 AWKYLTKKPVTV--PMENILITPREASDRYRGFHI-----NDWEKCIGCGTCSKICPTDA 66 Query: 78 ITIES-GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 IT+ + R ID +C +CGLC + C ++ + Sbjct: 67 ITMIEIEELSDVEGSKPQRPSIDYGRCSFCGLCVDICTTGSLQMTKEY 114 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 17/42 (40%) Query: 87 HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 R + D KCI CG C + CP DAI E + Sbjct: 36 EASDRYRGFHINDWEKCIGCGTCSKICPTDAITMIEIEELSD 77 >gi|193212953|ref|YP_001998906.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Chlorobaculum parvum NCIB 8327] gi|193086430|gb|ACF11706.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chlorobaculum parvum NCIB 8327] Length = 213 Score = 70.9 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 59/170 (34%), Gaps = 39/170 (22%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKT--------------------TINYPFEK 40 M + N+ + L++FF A T+ YP E Sbjct: 1 MSEYFSNIKTSATT-IATGMGITLKHFFNAVKRKGDAGIDDADYFRQVDGLCTLQYPKEA 59 Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH------------- 87 T P G + L + CI C+ C+ CP Q ITIE+ Sbjct: 60 IPTPP--HGRYRLYCNIDD---CIGCRQCDRACPVQCITIETIKATSDDLEACGKTSGGQ 114 Query: 88 DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 +DID+ KC+ CG+C CP + + P +F+ + + Y Sbjct: 115 QKRMWVPVFDIDVAKCMTCGICVSVCPTECLYHTPVADFSEFNVKNMMYH 164 >gi|315231247|ref|YP_004071683.1| Fe-hydrogenase subunit beta [Thermococcus barophilus MP] gi|315184275|gb|ADT84460.1| Fe-hydrogenase subunit beta [Thermococcus barophilus MP] Length = 190 Score = 70.9 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 37/145 (25%), Positives = 54/145 (37%), Gaps = 18/145 (12%) Query: 20 FFLCLRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78 L FK T +P E T FRG+ ++CI CKLC +CPA I Sbjct: 7 LSTVLSNLFKKPATNMFPKTEPVPTPEGFRGKLV-----YDVDKCIGCKLCVTVCPAGVI 61 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 + + +C++C C + CPV+A+ F AT + + D Sbjct: 62 EFVPE---------IKKVTFWLGRCVFCAQCVDVCPVNALEMSKEFLLATYDKYD---DN 109 Query: 139 ERLLNNGDRWESEIVRNIVTDSPYR 163 R L N + E + YR Sbjct: 110 LRWLKNEEIEEMIEAQKSKKVKKYR 134 Score = 42.0 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 10/70 (14%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 ++Y ++C C LC CP AIT G + ID KC+ CG+C C Sbjct: 131 KKYRIIPDKCKGCTLCARNCPQNAITGAPGK----------VHKIDPNKCVGCGICASVC 180 Query: 114 PVDAIVEGPN 123 AI E Sbjct: 181 RFGAIEEYEE 190 >gi|311278312|ref|YP_003940543.1| formate hydrogenlyase complex iron-sulfur subunit [Enterobacter cloacae SCF1] gi|308747507|gb|ADO47259.1| formate hydrogenlyase complex iron-sulfur subunit [Enterobacter cloacae SCF1] Length = 180 Score = 70.9 bits (172), Expect = 5e-11, Method: Composition-based stats. Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 10/136 (7%) Query: 25 RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84 + T YP + FRG+ + ++CI C C CP+ A+T+E+ Sbjct: 7 KALKTGTATAAYPLQPIEVDKNFRGKPE-----HSPQQCIGCAACVNACPSNALTVETDL 61 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNN 144 + + + ++ +CI+CG C+E CP AI +E A +++ L + Sbjct: 62 AGNA-----LAWQFNLGRCIFCGRCEEVCPTAAIRLSQEYELAVWKKEDFLQQSRFALCS 116 Query: 145 GDRWESEIVRNIVTDS 160 + D Sbjct: 117 CRVCQRPFAVQKEIDY 132 >gi|218701212|ref|YP_002408841.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli IAI39] gi|218371198|emb|CAR19029.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli IAI39] Length = 180 Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 10/129 (7%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T +YP E + FRG+ ++CI C C CP+ A+T+E+ + Sbjct: 14 ATSSYPLEPIAVDKNFRGKPE-----QNPQQCIGCAACVNACPSNALTVETDLATGE--- 65 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 + ++ ++ +CI+CG C+E CP AI +E A +++ +L N Sbjct: 66 --LAWEFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFVLCNCRVCNRP 123 Query: 152 IVRNIVTDS 160 D Sbjct: 124 FAVQKEIDY 132 >gi|215488036|ref|YP_002330467.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli O127:H6 str. E2348/69] gi|215266108|emb|CAS10533.1| formate hydrogenlyase complex iron-sulfur protein HycF [Escherichia coli O127:H6 str. E2348/69] Length = 180 Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 10/129 (7%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T +YP E + FRG+ ++CI C C CP+ A+T+E+ + Sbjct: 14 ATSSYPLEPIAVDKNFRGKPE-----QNPQQCIGCAACVNACPSNALTVETDLATGE--- 65 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 + + ++ +CI+CG C+E CP AI +E A +++ L N Sbjct: 66 --LAWQFNLGRCIFCGRCEEVCPTVAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRP 123 Query: 152 IVRNIVTDS 160 D Sbjct: 124 FAVQKEIDY 132 >gi|110642843|ref|YP_670573.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli 536] gi|191171357|ref|ZP_03032906.1| formate hydrogenlyase, subunit F [Escherichia coli F11] gi|300941096|ref|ZP_07155608.1| hydrogenase 4 subunit H [Escherichia coli MS 21-1] gi|300975044|ref|ZP_07172845.1| hydrogenase 4 subunit H [Escherichia coli MS 200-1] gi|312965022|ref|ZP_07779262.1| formate hydrogenlyase subunit 6 [Escherichia coli 2362-75] gi|331648438|ref|ZP_08349526.1| formate hydrogenlyase subunit 6 (FHL subunit 6) (Hydrogenase-3component F) [Escherichia coli M605] gi|110344435|gb|ABG70672.1| formate hydrogenase-3 component F [Escherichia coli 536] gi|190908291|gb|EDV67881.1| formate hydrogenlyase, subunit F [Escherichia coli F11] gi|281179723|dbj|BAI56053.1| formate hydrogenlyase subunit [Escherichia coli SE15] gi|300308812|gb|EFJ63332.1| hydrogenase 4 subunit H [Escherichia coli MS 200-1] gi|300454139|gb|EFK17632.1| hydrogenase 4 subunit H [Escherichia coli MS 21-1] gi|312290578|gb|EFR18458.1| formate hydrogenlyase subunit 6 [Escherichia coli 2362-75] gi|324005682|gb|EGB74901.1| hydrogenase 4 subunit H [Escherichia coli MS 57-2] gi|324013675|gb|EGB82894.1| hydrogenase 4 subunit H [Escherichia coli MS 60-1] gi|331042185|gb|EGI14327.1| formate hydrogenlyase subunit 6 (FHL subunit 6) (Hydrogenase-3component F) [Escherichia coli M605] Length = 180 Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 10/129 (7%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T +YP E + FRG+ ++CI C C CP+ A+T+E+ + Sbjct: 14 ATSSYPLEPIAVDKNFRGKPE-----QNPQQCIGCAACVNACPSNALTVETDLATGE--- 65 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 + + ++ +CI+CG C+E CP AI +E A +++ L N Sbjct: 66 --LAWQFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRP 123 Query: 152 IVRNIVTDS 160 D Sbjct: 124 FAVQKEIDY 132 >gi|170682605|ref|YP_001744869.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli SMS-3-5] gi|170520323|gb|ACB18501.1| formate hydrogenlyase, subunit F [Escherichia coli SMS-3-5] Length = 180 Score = 70.9 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 10/129 (7%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T +YP E + FRG+ ++CI C C CP+ A+T+E+ + Sbjct: 14 ATSSYPLEPIAVDKNFRGKPE-----QNPQQCIGCSACVNACPSNALTVETDLATGE--- 65 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 + ++ ++ +CI+CG C+E CP AI +E A +++ L N Sbjct: 66 --LAWEFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRP 123 Query: 152 IVRNIVTDS 160 D Sbjct: 124 FAVQKEIDY 132 >gi|323966867|gb|EGB62296.1| 4Fe-4S binding domain-containing protein [Escherichia coli M863] gi|327251443|gb|EGE63129.1| formate hydrogenlyase subunit 6 [Escherichia coli STEC_7v] Length = 180 Score = 70.5 bits (171), Expect = 6e-11, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 10/129 (7%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T +YP E + FRG+ ++CI C C CP+ A+T+E+ + Sbjct: 14 ATSSYPLEPIAVDKNFRGKPE-----QNPQQCIGCAACVNACPSNALTVETDLATGE--- 65 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 + + ++ +CI+CG C+E CP AI +E A +++ L N Sbjct: 66 --LAWQFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRP 123 Query: 152 IVRNIVTDS 160 D Sbjct: 124 FAVQKEIDY 132 >gi|296134447|ref|YP_003641694.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola sp. JR] gi|296033025|gb|ADG83793.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola potens JR] Length = 174 Score = 70.5 bits (171), Expect = 7e-11, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 49/121 (40%), Gaps = 10/121 (8%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + LR + +T YPF K S RG+ C+AC++CE +C Sbjct: 1 MFSFIKIVLRNLIRGPSTEPYPFGKASAPKGLRGKVKF-----DAHNCVACRMCEHVCAG 55 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 AI P + +++ + C +CGLC+ CP AI ++ A + + Sbjct: 56 GAIQFSEVPD-----KSGLKFTLWHNTCAFCGLCEYYCPTKAIHLTGDYHTAHLQKDKYG 110 Query: 136 Y 136 Y Sbjct: 111 Y 111 >gi|283852205|ref|ZP_06369478.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio sp. FW1012B] gi|283572431|gb|EFC20418.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio sp. FW1012B] Length = 175 Score = 70.5 bits (171), Expect = 7e-11, Method: Composition-based stats. Identities = 35/143 (24%), Positives = 50/143 (34%), Gaps = 18/143 (12%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALR--RYPNGEERCIACKLCE 70 LK V + R + T+ YP E+ FRG L RC+AC C Sbjct: 14 LKSLVIGLGVTGRAICQPGITVIYPREEVDNLASFRGHVELIGKDDAPDVPRCVACGACV 73 Query: 71 AICPAQAITI----------------ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 CP+ +T+ + GP G + +D C CG C + CP Sbjct: 74 KACPSNCLTVLCPVPAKEGDEAGAEAKMGPAPQKGCKSPAVVIVDFSLCSLCGQCAKTCP 133 Query: 115 VDAIVEGPNFEFATETRQELYYD 137 VD++ N R+ D Sbjct: 134 VDSLKFSDNPYMVAFDRKAFKID 156 >gi|206580434|ref|YP_002236934.1| formate hydrogenlyase, subunit F [Klebsiella pneumoniae 342] gi|206569492|gb|ACI11268.1| formate hydrogenlyase, subunit F [Klebsiella pneumoniae 342] Length = 180 Score = 70.5 bits (171), Expect = 7e-11, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 53/129 (41%), Gaps = 10/129 (7%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T +YP + FRG+ ++CI C C CP+ A+T+E+ + Sbjct: 14 ATHSYPLDPMPVDKNFRGKPEHT-----PQQCIGCAACVNACPSNALTVETDLTTNQ--- 65 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 + + ++ +CI+CG C+E CP AI P +E A +++ + + + Sbjct: 66 --LAWQFNLGRCIFCGRCEEVCPTAAIKLSPEYELAVWKKEDFLQQSRFAICHCRECQRP 123 Query: 152 IVRNIVTDS 160 D Sbjct: 124 FAVQKEIDY 132 >gi|333002277|gb|EGK21841.1| hydrogenase-4 component H [Shigella flexneri K-272] gi|333016098|gb|EGK35430.1| hydrogenase-4 component H [Shigella flexneri K-227] Length = 181 Score = 70.5 bits (171), Expect = 7e-11, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 48/138 (34%), Gaps = 13/138 (9%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + +R T+ YPF SP FRG+ L A Sbjct: 1 MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG----------ACA 47 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A + D + + + + + +CIYCG C+E CP AI NFE + + +LY Sbjct: 48 CACPANALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELSVTHKADLY 107 Query: 136 YDKERLLNNGDRWESEIV 153 L R E Sbjct: 108 THATFHLQRCSRCERPFA 125 >gi|26249119|ref|NP_755159.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli CFT073] gi|91212080|ref|YP_542066.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli UTI89] gi|117624952|ref|YP_853940.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli APEC O1] gi|170765966|ref|ZP_02900777.1| formate hydrogenlyase, subunit F [Escherichia albertii TW07627] gi|218690844|ref|YP_002399056.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli ED1a] gi|227888258|ref|ZP_04006063.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli 83972] gi|237706657|ref|ZP_04537138.1| formate hydrogenlyase subunit 6 [Escherichia sp. 3_2_53FAA] gi|300976820|ref|ZP_07173637.1| hydrogenase 4 subunit H [Escherichia coli MS 45-1] gi|301049523|ref|ZP_07196481.1| hydrogenase 4 subunit H [Escherichia coli MS 185-1] gi|306812402|ref|ZP_07446600.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli NC101] gi|331658828|ref|ZP_08359770.1| formate hydrogenlyase subunit 6 (FHL subunit 6) (Hydrogenase-3component F) [Escherichia coli TA206] gi|26109526|gb|AAN81729.1|AE016765_131 Formate hydrogenlyase subunit 6 [Escherichia coli CFT073] gi|91073654|gb|ABE08535.1| formate hydrogenlyase subunit 6 [Escherichia coli UTI89] gi|115514076|gb|ABJ02151.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli APEC O1] gi|170125112|gb|EDS94043.1| formate hydrogenlyase, subunit F [Escherichia albertii TW07627] gi|218428408|emb|CAR09333.2| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli ED1a] gi|226899697|gb|EEH85956.1| formate hydrogenlyase subunit 6 [Escherichia sp. 3_2_53FAA] gi|227834527|gb|EEJ44993.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli 83972] gi|294491620|gb|ADE90376.1| formate hydrogenlyase, subunit F [Escherichia coli IHE3034] gi|300298754|gb|EFJ55139.1| hydrogenase 4 subunit H [Escherichia coli MS 185-1] gi|300410006|gb|EFJ93544.1| hydrogenase 4 subunit H [Escherichia coli MS 45-1] gi|305854440|gb|EFM54878.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli NC101] gi|307554695|gb|ADN47470.1| formate hydrogenlyase subunit 6 [Escherichia coli ABU 83972] gi|307625709|gb|ADN70013.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli UM146] gi|315289283|gb|EFU48678.1| hydrogenase 4 subunit H [Escherichia coli MS 110-3] gi|315293723|gb|EFU53075.1| hydrogenase 4 subunit H [Escherichia coli MS 153-1] gi|320194858|gb|EFW69487.1| Formate hydrogenlyase complex 3 iron-sulfur protein [Escherichia coli WV_060327] gi|323188866|gb|EFZ74151.1| formate hydrogenlyase subunit 6 [Escherichia coli RN587/1] gi|323951061|gb|EGB46937.1| 4Fe-4S binding domain-containing protein [Escherichia coli H252] gi|323957068|gb|EGB52793.1| 4Fe-4S binding domain-containing protein [Escherichia coli H263] gi|331053410|gb|EGI25439.1| formate hydrogenlyase subunit 6 (FHL subunit 6) (Hydrogenase-3component F) [Escherichia coli TA206] Length = 180 Score = 70.5 bits (171), Expect = 7e-11, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 52/129 (40%), Gaps = 10/129 (7%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T +YP E + FRG+ ++CI C C CP+ A+T+E+ + Sbjct: 14 ATSSYPLEPIAVDKNFRGKPE-----QNPQQCIGCAACVNACPSNALTVETDLATGE--- 65 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 + + D+ +CI+CG C+E CP AI +E A +++ L N Sbjct: 66 --LAWQFDLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRP 123 Query: 152 IVRNIVTDS 160 D Sbjct: 124 FAVQKEIDY 132 >gi|293412078|ref|ZP_06654801.1| 4Fe-4S ferredoxin [Escherichia coli B354] gi|291468849|gb|EFF11340.1| 4Fe-4S ferredoxin [Escherichia coli B354] Length = 180 Score = 70.5 bits (171), Expect = 7e-11, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 10/129 (7%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T +YP E + FRG+ ++CI C C CP+ A+T+E+ + Sbjct: 14 ATSSYPLEPIAVDKNFRGKPE-----QNPQQCIGCAACVNACPSNALTVETDIATGE--- 65 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 + ++ ++ +CI+CG C+E CP AI +E A +++ L N Sbjct: 66 --LAWEFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRP 123 Query: 152 IVRNIVTDS 160 D Sbjct: 124 FAVQKEIDY 132 >gi|218706214|ref|YP_002413733.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli UMN026] gi|293406212|ref|ZP_06650138.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli FVEC1412] gi|298381949|ref|ZP_06991546.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli FVEC1302] gi|300899959|ref|ZP_07118162.1| hydrogenase 4 subunit H [Escherichia coli MS 198-1] gi|331664274|ref|ZP_08365180.1| formate hydrogenlyase subunit 6 (FHL subunit 6) (Hydrogenase-3component F) [Escherichia coli TA143] gi|218433311|emb|CAR14211.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli UMN026] gi|284922656|emb|CBG35744.1| formate hydrogenlyase subunit 6 [Escherichia coli 042] gi|291426218|gb|EFE99250.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli FVEC1412] gi|298277089|gb|EFI18605.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli FVEC1302] gi|300356468|gb|EFJ72338.1| hydrogenase 4 subunit H [Escherichia coli MS 198-1] gi|331058205|gb|EGI30186.1| formate hydrogenlyase subunit 6 (FHL subunit 6) (Hydrogenase-3component F) [Escherichia coli TA143] Length = 180 Score = 70.5 bits (171), Expect = 7e-11, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 10/129 (7%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T +YP E + FRG+ ++CI C C CP+ A+T+E+ + Sbjct: 14 ATSSYPLEPIAVDKNFRGKPE-----QNPQQCIGCAACVNACPSNALTVETDLATGE--- 65 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 + ++ ++ +CI+CG C+E CP AI +E A +++ L N Sbjct: 66 --LAWEFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRICNRP 123 Query: 152 IVRNIVTDS 160 D Sbjct: 124 FAVQKEIDY 132 >gi|333001063|gb|EGK20633.1| formate hydrogenlyase subunit 6 [Shigella flexneri K-272] gi|333015432|gb|EGK34771.1| formate hydrogenlyase subunit 6 [Shigella flexneri K-227] Length = 180 Score = 70.5 bits (171), Expect = 7e-11, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 53/129 (41%), Gaps = 10/129 (7%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T +YP E + FRG+ ++CI C C CP+ A+T+E+ + Sbjct: 14 ATSSYPLEPIAVDKNFRGKPE-----QNPQQCIGCAACVNACPSNALTVETDLPTGE--- 65 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 + ++ ++ +CI+CG C+E CP AI FE A +++ L N Sbjct: 66 --LAWEFNLGRCIFCGRCEEVCPTAAIKLSQEFELAVWKKEDFLQQSRFALCNCRVCNRP 123 Query: 152 IVRNIVTDS 160 D Sbjct: 124 FAVQKEIDY 132 >gi|194445625|ref|YP_002042090.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194404288|gb|ACF64510.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 180 Score = 70.5 bits (171), Expect = 7e-11, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 55/129 (42%), Gaps = 10/129 (7%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T +YP E + FRG+ + ++CI C C CP+ A+T+E+ ++ Sbjct: 14 ATSSYPLEPIAVDKNFRGKPE-----HNPQQCIGCAACVNACPSNALTVETLLATNE--- 65 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 + + ++ +CI+CG C+E CP AI +E A +++ L N + Sbjct: 66 --LAWQFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCKRP 123 Query: 152 IVRNIVTDS 160 D Sbjct: 124 FAVQKEIDY 132 >gi|300820848|ref|ZP_07100998.1| hydrogenase 4 subunit H [Escherichia coli MS 119-7] gi|300903498|ref|ZP_07121423.1| hydrogenase 4 subunit H [Escherichia coli MS 84-1] gi|301302840|ref|ZP_07208968.1| hydrogenase 4 subunit H [Escherichia coli MS 124-1] gi|331669228|ref|ZP_08370076.1| hydrogenase-4 component H [Escherichia coli TA271] gi|331678473|ref|ZP_08379148.1| hydrogenase-4 component H [Escherichia coli H591] gi|300404530|gb|EFJ88068.1| hydrogenase 4 subunit H [Escherichia coli MS 84-1] gi|300526601|gb|EFK47670.1| hydrogenase 4 subunit H [Escherichia coli MS 119-7] gi|300841775|gb|EFK69535.1| hydrogenase 4 subunit H [Escherichia coli MS 124-1] gi|315256504|gb|EFU36472.1| hydrogenase 4 subunit H [Escherichia coli MS 85-1] gi|331064422|gb|EGI36333.1| hydrogenase-4 component H [Escherichia coli TA271] gi|331074933|gb|EGI46253.1| hydrogenase-4 component H [Escherichia coli H591] Length = 181 Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 48/141 (34%), Gaps = 13/141 (9%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + +R T+ YPF SP FRG+ L A Sbjct: 1 MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG----------ACA 47 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A + D + + + + + +CIYCG C+E CP AI NFE + +LY Sbjct: 48 CACPANALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 107 Query: 136 YDKERLLNNGDRWESEIVRNI 156 L R E + Sbjct: 108 TRATFHLQRCSRCERPFAQQK 128 >gi|14521671|ref|NP_127147.1| hydrogenase-4 component b [Pyrococcus abyssi GE5] gi|5458890|emb|CAB50377.1| Formate hydrogen lyase subunit 6 (hydrogenase 3 component F) [Pyrococcus abyssi GE5] Length = 185 Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 33/122 (27%), Positives = 49/122 (40%), Gaps = 10/122 (8%) Query: 31 KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT 90 T +YPF + P +RG + E CI C C CP A+ +E Sbjct: 25 PVTTDYPFVEVEKPPEYRGVPHI-----DPELCIGCGACVNACPPDALIMEWDKENGV-- 77 Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWES 150 R + +CI C C E CP A+ FE AT ++++L E L +R + Sbjct: 78 ---KRLTFNAARCIRCYRCVEVCPTGAMQGTLRFEVATPSKEDLVEVVEHRLAKCERCGN 134 Query: 151 EI 152 + Sbjct: 135 YL 136 >gi|298246751|ref|ZP_06970556.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Ktedonobacter racemifer DSM 44963] gi|297549410|gb|EFH83276.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Ktedonobacter racemifer DSM 44963] Length = 801 Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 10/90 (11%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C++C C +CP ++ + R RY + +CI+CG C E CP A+ Sbjct: 689 HDTDCVSCGACVQVCPTGSLMMAE--------RHLTRYAFALDRCIFCGDCVEVCPHGAL 740 Query: 119 VEGPNFEFATETR--QELYYDKERLLNNGD 146 E PNFE + R +++ +K+ L D Sbjct: 741 GETPNFELSFFNRFGEDVTLEKQDLAQAPD 770 >gi|118581922|ref|YP_903172.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Pelobacter propionicus DSM 2379] gi|118504632|gb|ABL01115.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pelobacter propionicus DSM 2379] Length = 128 Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 44/129 (34%), Positives = 56/129 (43%), Gaps = 18/129 (13%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 LR+ T NYP EK FRG + E+CI CK C CPA+AI I Sbjct: 11 VLRHSVMKPATCNYPAEKQKMPEHFRGRIRYK-----AEKCIGCKFCVRDCPARAIEIFK 65 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLL 142 + + +CIYCG C ++CP DA+ P+FE A DKE+L Sbjct: 66 VADKVFEAKFY------LDRCIYCGQCVDSCPKDALELTPDFELAQ-------IDKEKLR 112 Query: 143 NNGDRWESE 151 R E E Sbjct: 113 VVCRREEGE 121 >gi|118579036|ref|YP_900286.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Pelobacter propionicus DSM 2379] gi|118501746|gb|ABK98228.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pelobacter propionicus DSM 2379] Length = 129 Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 40/124 (32%), Positives = 54/124 (43%), Gaps = 11/124 (8%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 LR+ A T NYPFEK FRG+ E+CI CK+C CPA+AITI Sbjct: 12 VLRHSIMAPATRNYPFEKLEMPDNFRGKIVF-----DYEKCIGCKICVRDCPARAITITR 66 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLL 142 + + + +CIYC C ++CP A+ FE A R + Sbjct: 67 VAD------KVFEAEFYLDRCIYCAQCVDSCPKGALDNTREFELAQIDRTQHRIHFHAKT 120 Query: 143 NNGD 146 + GD Sbjct: 121 DVGD 124 >gi|209761898|gb|ACI79261.1| formate hydrogenlyase subunit-7 component F [Escherichia coli] gi|320645910|gb|EFX14891.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli O157:H- str. 493-89] gi|320651210|gb|EFX19645.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli O157:H- str. H 2687] Length = 180 Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 10/129 (7%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T +YP E + FRG+ ++CI C C CP+ A+T+E+ + Sbjct: 14 ATSSYPLEPIAVDKNFRGKPE-----QNPQQCIGCAACVNACPSNALTVETDLATGE--- 65 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 + ++ ++ +CI+CG C+E CP AI +E A +++ L N Sbjct: 66 --LAWEFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRP 123 Query: 152 IVRNIVTDS 160 D Sbjct: 124 FAVQKEIDY 132 >gi|168242578|ref|ZP_02667510.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194448985|ref|YP_002046809.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197251323|ref|YP_002147746.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197261856|ref|ZP_03161930.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|204928218|ref|ZP_03219418.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|224584625|ref|YP_002638423.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238909615|ref|ZP_04653452.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|194407289|gb|ACF67508.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197215026|gb|ACH52423.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197240111|gb|EDY22731.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|204322540|gb|EDZ07737.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205338217|gb|EDZ24981.1| formate hydrogenlyase, subunit F [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|224469152|gb|ACN46982.1| hydrogenase 4 Fe-S subunit [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 180 Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 54/129 (41%), Gaps = 10/129 (7%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T +YP E + FRG+ + ++CI C C CP+ A+T+E+ ++ Sbjct: 14 ATSSYPLEPIAVDKNFRGKPE-----HNPQQCIGCAACVNACPSNALTVETLLATNE--- 65 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 + + ++ +CI+CG C+E CP AI +E A +++ L N Sbjct: 66 --LAWQFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRP 123 Query: 152 IVRNIVTDS 160 D Sbjct: 124 FAVQKEIDY 132 >gi|15803237|ref|NP_289269.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli O157:H7 EDL933] gi|15832830|ref|NP_311603.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli O157:H7 str. Sakai] gi|74313287|ref|YP_311706.1| formate hydrogenlyase complex iron-sulfur subunit [Shigella sonnei Ss046] gi|82545205|ref|YP_409152.1| formate hydrogenlyase complex iron-sulfur subunit [Shigella boydii Sb227] gi|110806653|ref|YP_690173.1| formate hydrogenlyase complex iron-sulfur subunit [Shigella flexneri 5 str. 8401] gi|157162166|ref|YP_001459484.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli HS] gi|168749955|ref|ZP_02774977.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str. EC4113] gi|168755465|ref|ZP_02780472.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str. EC4401] gi|168762881|ref|ZP_02787888.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str. EC4501] gi|168768811|ref|ZP_02793818.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str. EC4486] gi|168774748|ref|ZP_02799755.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str. EC4196] gi|168778702|ref|ZP_02803709.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str. EC4076] gi|168787975|ref|ZP_02812982.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str. EC869] gi|168800199|ref|ZP_02825206.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str. EC508] gi|170019034|ref|YP_001723988.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli ATCC 8739] gi|188492377|ref|ZP_02999647.1| iron-sulfur binding domain protein [Escherichia coli 53638] gi|191166826|ref|ZP_03028652.1| formate hydrogenlyase, subunit F [Escherichia coli B7A] gi|193065016|ref|ZP_03046091.1| formate hydrogenlyase, subunit F [Escherichia coli E22] gi|194427901|ref|ZP_03060447.1| formate hydrogenlyase, subunit F [Escherichia coli B171] gi|194438985|ref|ZP_03071069.1| formate hydrogenlyase, subunit F [Escherichia coli 101-1] gi|195938470|ref|ZP_03083852.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli O157:H7 str. EC4024] gi|208805909|ref|ZP_03248246.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str. EC4206] gi|208813713|ref|ZP_03255042.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str. EC4045] gi|208818938|ref|ZP_03259258.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str. EC4042] gi|209396172|ref|YP_002272183.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str. EC4115] gi|217327035|ref|ZP_03443118.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str. TW14588] gi|218547772|ref|YP_002381563.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia fergusonii ATCC 35469] gi|253772425|ref|YP_003035256.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254037759|ref|ZP_04871817.1| formate hydrogenlyase [Escherichia sp. 1_1_43] gi|254162651|ref|YP_003045759.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli B str. REL606] gi|254794660|ref|YP_003079497.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli O157:H7 str. TW14359] gi|260845363|ref|YP_003223141.1| formate hydrogenlyase complex iron-sulfur protein HycF [Escherichia coli O103:H2 str. 12009] gi|261226014|ref|ZP_05940295.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli O157:H7 str. FRIK2000] gi|261256728|ref|ZP_05949261.1| formate hydrogenlyase complex iron-sulfur protein HycF [Escherichia coli O157:H7 str. FRIK966] gi|291284047|ref|YP_003500865.1| Formate hydrogenlyase, subunit F [Escherichia coli O55:H7 str. CB9615] gi|293415970|ref|ZP_06658610.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli B185] gi|300930578|ref|ZP_07145970.1| hydrogenase 4 subunit H [Escherichia coli MS 187-1] gi|301027130|ref|ZP_07190499.1| hydrogenase 4 subunit H [Escherichia coli MS 69-1] gi|307312857|ref|ZP_07592487.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia coli W] gi|309795180|ref|ZP_07689599.1| hydrogenase 4 subunit H [Escherichia coli MS 145-7] gi|312973070|ref|ZP_07787243.1| formate hydrogenlyase subunit 6 [Escherichia coli 1827-70] gi|331654197|ref|ZP_08355197.1| formate hydrogenlyase subunit 6 (FHL subunit 6) (Hydrogenase-3component F) [Escherichia coli M718] gi|331674228|ref|ZP_08374988.1| formate hydrogenlyase subunit 6 (FHL subunit 6) (Hydrogenase-3component F) [Escherichia coli TA280] gi|331684333|ref|ZP_08384925.1| formate hydrogenlyase subunit 6 (FHL subunit 6) (Hydrogenase-3component F) [Escherichia coli H299] gi|12517168|gb|AAG57827.1|AE005500_6 probable iron-sulfur protein of hydrogenase 3 (part of FHL complex) [Escherichia coli O157:H7 str. EDL933] gi|13363047|dbj|BAB36999.1| formate hydrogenlyase subunit-7 component F [Escherichia coli O157:H7 str. Sakai] gi|73856764|gb|AAZ89471.1| probable iron-sulfur protein of hydrogenase 3 [Shigella sonnei Ss046] gi|81246616|gb|ABB67324.1| probable iron-sulfur protein of hydrogenase 3 [Shigella boydii Sb227] gi|110616201|gb|ABF04868.1| probable iron-sulfur protein of hydrogenase 3 (part of FHL complex) [Shigella flexneri 5 str. 8401] gi|157067846|gb|ABV07101.1| formate hydrogenlyase, subunit F [Escherichia coli HS] gi|169753962|gb|ACA76661.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia coli ATCC 8739] gi|187769586|gb|EDU33430.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str. EC4196] gi|188015821|gb|EDU53943.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str. EC4113] gi|188487576|gb|EDU62679.1| iron-sulfur binding domain protein [Escherichia coli 53638] gi|189003527|gb|EDU72513.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str. EC4076] gi|189357266|gb|EDU75685.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str. EC4401] gi|189362055|gb|EDU80474.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str. EC4486] gi|189366888|gb|EDU85304.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str. EC4501] gi|189372135|gb|EDU90551.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str. EC869] gi|189377500|gb|EDU95916.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str. EC508] gi|190903197|gb|EDV62920.1| formate hydrogenlyase, subunit F [Escherichia coli B7A] gi|192927313|gb|EDV81932.1| formate hydrogenlyase, subunit F [Escherichia coli E22] gi|194414134|gb|EDX30410.1| formate hydrogenlyase, subunit F [Escherichia coli B171] gi|194422106|gb|EDX38109.1| formate hydrogenlyase, subunit F [Escherichia coli 101-1] gi|208725710|gb|EDZ75311.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str. EC4206] gi|208734990|gb|EDZ83677.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str. EC4045] gi|208739061|gb|EDZ86743.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str. EC4042] gi|209157572|gb|ACI35005.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str. EC4115] gi|209761900|gb|ACI79262.1| formate hydrogenlyase subunit-7 component F [Escherichia coli] gi|209761902|gb|ACI79263.1| formate hydrogenlyase subunit-7 component F [Escherichia coli] gi|209761904|gb|ACI79264.1| formate hydrogenlyase subunit-7 component F [Escherichia coli] gi|209761906|gb|ACI79265.1| formate hydrogenlyase subunit-7 component F [Escherichia coli] gi|217319402|gb|EEC27827.1| formate hydrogenlyase, subunit F [Escherichia coli O157:H7 str. TW14588] gi|218355313|emb|CAQ87920.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia fergusonii ATCC 35469] gi|222034414|emb|CAP77156.1| Formate hydrogenlyase subunit 6 [Escherichia coli LF82] gi|226839383|gb|EEH71404.1| formate hydrogenlyase [Escherichia sp. 1_1_43] gi|242378277|emb|CAQ33052.1| formate hydrogenlyase complex iron-sulfur protein, subunit of hydrogenase 3 and formate hydrogenlyase complex [Escherichia coli BL21(DE3)] gi|253323469|gb|ACT28071.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974552|gb|ACT40223.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli B str. REL606] gi|253978719|gb|ACT44389.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli BL21(DE3)] gi|254594060|gb|ACT73421.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli O157:H7 str. TW14359] gi|257760510|dbj|BAI32007.1| formate hydrogenlyase complex iron-sulfur protein HycF [Escherichia coli O103:H2 str. 12009] gi|290763920|gb|ADD57881.1| Formate hydrogenlyase, subunit F [Escherichia coli O55:H7 str. CB9615] gi|291432159|gb|EFF05141.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli B185] gi|300395162|gb|EFJ78700.1| hydrogenase 4 subunit H [Escherichia coli MS 69-1] gi|300461520|gb|EFK25013.1| hydrogenase 4 subunit H [Escherichia coli MS 187-1] gi|306907292|gb|EFN37798.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia coli W] gi|308121151|gb|EFO58413.1| hydrogenase 4 subunit H [Escherichia coli MS 145-7] gi|309703079|emb|CBJ02411.1| formate hydrogenlyase subunit 6 [Escherichia coli ETEC H10407] gi|310333012|gb|EFQ00226.1| formate hydrogenlyase subunit 6 [Escherichia coli 1827-70] gi|312947249|gb|ADR28076.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli O83:H1 str. NRG 857C] gi|315061996|gb|ADT76323.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli W] gi|315298792|gb|EFU58046.1| hydrogenase 4 subunit H [Escherichia coli MS 16-3] gi|320173427|gb|EFW48626.1| Formate hydrogenlyase complex 3 iron-sulfur protein [Shigella dysenteriae CDC 74-1112] gi|320186506|gb|EFW61234.1| Formate hydrogenlyase complex 3 iron-sulfur protein [Shigella flexneri CDC 796-83] gi|320189052|gb|EFW63711.1| Formate hydrogenlyase complex 3 iron-sulfur protein [Escherichia coli O157:H7 str. EC1212] gi|320640363|gb|EFX09902.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli O157:H7 str. G5101] gi|320656760|gb|EFX24648.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320662303|gb|EFX29700.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli O55:H7 str. USDA 5905] gi|320667354|gb|EFX34312.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli O157:H7 str. LSU-61] gi|323159852|gb|EFZ45823.1| formate hydrogenlyase subunit 6 [Escherichia coli E128010] gi|323167105|gb|EFZ52823.1| formate hydrogenlyase subunit 6 [Shigella sonnei 53G] gi|323172992|gb|EFZ58623.1| formate hydrogenlyase subunit 6 [Escherichia coli LT-68] gi|323377421|gb|ADX49689.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli KO11] gi|323935724|gb|EGB32038.1| 4Fe-4S binding domain-containing protein [Escherichia coli E1520] gi|323941449|gb|EGB37632.1| 4Fe-4S binding domain-containing protein [Escherichia coli E482] gi|323960620|gb|EGB56246.1| 4Fe-4S binding domain-containing protein [Escherichia coli H489] gi|323971551|gb|EGB66784.1| 4Fe-4S binding domain-containing protein [Escherichia coli TA007] gi|324111345|gb|EGC05327.1| 4Fe-4S binding domain-containing protein [Escherichia fergusonii B253] gi|325496239|gb|EGC94098.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia fergusonii ECD227] gi|326339208|gb|EGD63023.1| Formate hydrogenlyase complex 3 iron-sulfur protein [Escherichia coli O157:H7 str. 1044] gi|326342909|gb|EGD66677.1| Formate hydrogenlyase complex 3 iron-sulfur protein [Escherichia coli O157:H7 str. 1125] gi|331047579|gb|EGI19656.1| formate hydrogenlyase subunit 6 (FHL subunit 6) (Hydrogenase-3component F) [Escherichia coli M718] gi|331068322|gb|EGI39717.1| formate hydrogenlyase subunit 6 (FHL subunit 6) (Hydrogenase-3component F) [Escherichia coli TA280] gi|331077948|gb|EGI49154.1| formate hydrogenlyase subunit 6 (FHL subunit 6) (Hydrogenase-3component F) [Escherichia coli H299] gi|332091881|gb|EGI96959.1| formate hydrogenlyase subunit 6 [Shigella boydii 3594-74] gi|332344601|gb|AEE57935.1| formate hydrogenlyase subunit 6 [Escherichia coli UMNK88] Length = 180 Score = 70.5 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 10/129 (7%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T +YP E + FRG+ ++CI C C CP+ A+T+E+ + Sbjct: 14 ATSSYPLEPIAVDKNFRGKPE-----QNPQQCIGCAACVNACPSNALTVETDLATGE--- 65 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 + ++ ++ +CI+CG C+E CP AI +E A +++ L N Sbjct: 66 --LAWEFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRP 123 Query: 152 IVRNIVTDS 160 D Sbjct: 124 FAVQKEIDY 132 >gi|323978670|gb|EGB73752.1| 4Fe-4S binding domain-containing protein [Escherichia coli TW10509] Length = 180 Score = 70.1 bits (170), Expect = 8e-11, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 10/129 (7%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T +YP E + FRG+ ++CI C C CP+ A+T+E+ + Sbjct: 14 ATSSYPLEPIAVDKNFRGKPE-----QNPQQCIGCAACVNACPSNALTVETDLATGE--- 65 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 + ++ ++ +CI+CG C+E CP AI +E A +++ L N Sbjct: 66 --LAWEFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRP 123 Query: 152 IVRNIVTDS 160 D Sbjct: 124 FAVQKEIDY 132 >gi|4761221|gb|AAD29283.1|AF113909_2 NADH dehydrogenase 18kD subunit [Suaeda japonica] Length = 114 Score = 70.1 bits (170), Expect = 9e-11, Method: Composition-based stats. Identities = 25/79 (31%), Positives = 39/79 (49%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++CIAC++C CP ++ +R + Y ID CI+CG C E CP + + Sbjct: 4 EFDKCIACEVCVRACPIDLPLVDWKLETDIRKKRLLNYSIDFGICIFCGNCVEYCPTNCL 63 Query: 119 VEGPNFEFATETRQELYYD 137 +E +T R EL Y+ Sbjct: 64 SMTEEYELSTYDRHELNYN 82 >gi|332087441|gb|EGI92569.1| formate hydrogenlyase subunit 6 [Shigella boydii 5216-82] Length = 180 Score = 70.1 bits (170), Expect = 9e-11, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 10/129 (7%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T +YP E + FRG+ ++CI C C CP+ A+T+E+ + Sbjct: 14 ATSSYPLEPIAVDKNFRGKPE-----QNPQQCIGCAACVNACPSNALTVETDLATGE--- 65 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 + ++ ++ +CI+CG C+E CP AI +E A +++ L N Sbjct: 66 --LAWEFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRP 123 Query: 152 IVRNIVTDS 160 D Sbjct: 124 FAVQKEIDY 132 >gi|194432977|ref|ZP_03065260.1| formate hydrogenlyase, subunit F [Shigella dysenteriae 1012] gi|194418704|gb|EDX34790.1| formate hydrogenlyase, subunit F [Shigella dysenteriae 1012] gi|320180857|gb|EFW55780.1| Formate hydrogenlyase complex 3 iron-sulfur protein [Shigella boydii ATCC 9905] gi|332088651|gb|EGI93764.1| formate hydrogenlyase subunit 6 [Shigella dysenteriae 155-74] Length = 180 Score = 70.1 bits (170), Expect = 9e-11, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 10/129 (7%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T +YP E + FRG+ ++CI C C CP+ A+T+E+ + Sbjct: 14 ATSSYPLEPIAVDKNFRGKPE-----QNPQQCIGCAACVNACPSNALTVETDLATGE--- 65 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 + ++ ++ +CI+CG C+E CP AI +E A +++ L N Sbjct: 66 --LAWEFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRP 123 Query: 152 IVRNIVTDS 160 D Sbjct: 124 FAVQKEIDY 132 >gi|283852264|ref|ZP_06369536.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio sp. FW1012B] gi|283572346|gb|EFC20334.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio sp. FW1012B] Length = 193 Score = 70.1 bits (170), Expect = 9e-11, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 49/152 (32%), Gaps = 30/152 (19%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE--ERCIACKLCE 70 LK + + R + T+ YP + +RG L RCIAC C Sbjct: 14 LKSLLVGLGITGRAMARPSVTVLYPKREVGNLDTYRGHVELVGKDGEPAVPRCIACGACV 73 Query: 71 AICPAQAI----------------------------TIESGPRCHDGTRRTVRYDIDMIK 102 CP+Q + GP G + + D Sbjct: 74 RACPSQCLAVACPIGGGKPGPEGRSAAELAGELIPEVETMGPAPQKGCKTPGAFVYDYSL 133 Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134 C CG C +ACPVD++ + F RQ+ Sbjct: 134 CSLCGQCVKACPVDSLRFSRHAYFIGTRRQDF 165 >gi|288932071|ref|YP_003436131.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus placidus DSM 10642] gi|288894319|gb|ADC65856.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus placidus DSM 10642] Length = 247 Score = 70.1 bits (170), Expect = 9e-11, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 12/129 (9%) Query: 17 VGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + A + K TI+YP E+ FRG +E CI+C C ICPA Sbjct: 20 LRAISEVTKQAIKPGTITISYPHERRKLPDYFRGFILF-----EKEECISCFRCAHICPA 74 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 AI + + +D KCI+C C ++CP A+ + A + + + Sbjct: 75 NAIQMYADQEGRYYPG------VDYAKCIFCHFCVDSCPTAALKPSKIHDVAFKDVESMM 128 Query: 136 YDKERLLNN 144 E++ Sbjct: 129 ITPEQMEQV 137 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 30/84 (35%), Gaps = 7/84 (8%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E+ + P E CI C+LC CP AI + V + Sbjct: 165 EELTVKFDKPKRPRFVAAPLNAENCIGCRLCMFSCPVDAIKSKVEE-------VKVTLET 217 Query: 99 DMIKCIYCGLCQEACPVDAIVEGP 122 D KC CG+C CP + + P Sbjct: 218 DYEKCTGCGICVRICPTEVLKLTP 241 >gi|242399275|ref|YP_002994699.1| Membrane-bound hydrogenase MBH 1, subunit Mbh1N (hydrogenase subunit) [Thermococcus sibiricus MM 739] gi|242265668|gb|ACS90350.1| Membrane-bound hydrogenase MBH 1, subunit Mbh1N (hydrogenase subunit) [Thermococcus sibiricus MM 739] Length = 189 Score = 70.1 bits (170), Expect = 9e-11, Method: Composition-based stats. Identities = 35/147 (23%), Positives = 54/147 (36%), Gaps = 23/147 (15%) Query: 20 FFLCLRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78 + LR FK+ T +P E FRG+ +CI CKLC +CPA Sbjct: 7 LSVVLRNLFKSPATNAFPKSEPVPIPEGFRGKLVYHVD-----KCIGCKLCMNVCPAGVF 61 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR--QELYY 136 + + + +C++C C + CPV+A+ F AT + L + Sbjct: 62 EYVPE---------IKKVTLWLGRCVFCQQCVDVCPVNALEMSGEFLLATYDKYDDNLRW 112 Query: 137 DKERLLNNGDRWESEIVRNIVTDSPYR 163 K + E I + YR Sbjct: 113 LKN------EEIEEMIAQKSGKTKKYR 133 Score = 41.2 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 28/70 (40%), Gaps = 10/70 (14%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 ++Y E+C C LC CP AI V + I+ KCI CG+C C Sbjct: 130 KKYRIIAEKCKGCTLCARNCPQNAIEGAP----------RVVHKINPEKCIGCGICATIC 179 Query: 114 PVDAIVEGPN 123 AI E Sbjct: 180 KFSAIEEYEE 189 >gi|303245741|ref|ZP_07332024.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio fructosovorans JJ] gi|302493004|gb|EFL52869.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio fructosovorans JJ] Length = 189 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 46/153 (30%), Gaps = 28/153 (18%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALR--RYPNGEERCIACKLCE 70 +K + + K T+ YP + +RG L G RC+AC C Sbjct: 14 IKSLFVGLGITGQALTKPNVTVLYPMGEVKNLDSYRGHVELVGKEDDPGSPRCVACGACV 73 Query: 71 AICPAQAIT--------------------------IESGPRCHDGTRRTVRYDIDMIKCI 104 CP+ ++ P G + + D C Sbjct: 74 RACPSNCLSVACPVGDAGPKGREAEEMVGELIPRIEMMAPAPQKGCKFPGVFTYDYSLCS 133 Query: 105 YCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 CG C CPV ++ + F R++ D Sbjct: 134 LCGQCVRICPVASLRFSRHAYFIGTRREDFRLD 166 >gi|213859999|ref|ZP_03385703.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 118 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 10/104 (9%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T +YP E + FRG+ + ++CI C C CP+ A+T+E+ ++ Sbjct: 14 ATSSYPLEPIAVDKNFRGKPE-----HNPQQCIGCAACVNACPSNALTVETDLATNE--- 65 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 + + ++ +CI+CG C+E CP AI +E A +++ Sbjct: 66 --LAWQFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFL 107 >gi|283798986|ref|ZP_06348139.1| formate hydrogenlyase subunit 6 [Clostridium sp. M62/1] gi|291073254|gb|EFE10618.1| formate hydrogenlyase subunit 6 [Clostridium sp. M62/1] Length = 112 Score = 70.1 bits (170), Expect = 1e-10, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 10/104 (9%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T +YP E + FRG+ + ++CI C C CP+ A+T+E+ ++ Sbjct: 10 ATSSYPLEPIAVDKNFRGKPE-----HNPQQCIGCAACVNACPSNALTVETLLATNE--- 61 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 + + ++ +CI+CG C+E CP AI +E A +++ Sbjct: 62 --LAWQFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFL 103 >gi|332157671|ref|YP_004422950.1| NADH-plastoquinone oxidoreductase subunit [Pyrococcus sp. NA2] gi|331033134|gb|AEC50946.1| NADH-plastoquinone oxidoreductase subunit [Pyrococcus sp. NA2] Length = 136 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 28/142 (19%), Positives = 49/142 (34%), Gaps = 18/142 (12%) Query: 20 FFLCLRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78 ++ FK T +P E T FRG+ E+C+ C++C +CPA Sbjct: 7 LPTVIKNLFKRPATNPFPKTEPVPTPEGFRGKIV-----YNVEKCVGCRMCVTVCPAGVF 61 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE---LY 135 R + + +C++C C + CP A+ F A+ + + +Y Sbjct: 62 IYLPEIR---------KVTLWTGRCVFCKQCVDVCPTGALQMSDEFLLASYDKYDGKFIY 112 Query: 136 YDKERLLNNGDRWESEIVRNIV 157 E + E Sbjct: 113 LTPEEAEEIKKKQEELKKAKKK 134 >gi|283786730|ref|YP_003366595.1| formate hydrogenlyase subunit 6 [Citrobacter rodentium ICC168] gi|282950184|emb|CBG89820.1| formate hydrogenlyase subunit 6 [Citrobacter rodentium ICC168] Length = 180 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 55/128 (42%), Gaps = 10/128 (7%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 T +YP E + FRG+ + ++CI C C CP+ A+T+E+ ++ Sbjct: 15 TSSYPLEPIAVDKNFRGKPE-----HNPQQCIGCAACVNACPSNALTVETDLATNE---- 65 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEI 152 + + ++ +CI+CG C+E CP AI +E A +++ L + + Sbjct: 66 -LAWQFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCHCRVCQRPF 124 Query: 153 VRNIVTDS 160 D Sbjct: 125 AVQKEIDY 132 >gi|16130627|ref|NP_417200.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli str. K-12 substr. MG1655] gi|89109507|ref|AP_003287.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli str. K-12 substr. W3110] gi|170082296|ref|YP_001731616.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli str. K-12 substr. DH10B] gi|238901857|ref|YP_002927653.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli BW2952] gi|256024773|ref|ZP_05438638.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia sp. 4_1_40B] gi|300947002|ref|ZP_07161228.1| hydrogenase 4 subunit H [Escherichia coli MS 116-1] gi|300954960|ref|ZP_07167372.1| hydrogenase 4 subunit H [Escherichia coli MS 175-1] gi|301027397|ref|ZP_07190736.1| hydrogenase 4 subunit H [Escherichia coli MS 196-1] gi|301645300|ref|ZP_07245250.1| hydrogenase 4 subunit H [Escherichia coli MS 146-1] gi|307139407|ref|ZP_07498763.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli H736] gi|331643404|ref|ZP_08344535.1| formate hydrogenlyase subunit 6 (FHL subunit 6) (Hydrogenase-3component F) [Escherichia coli H736] gi|123920|sp|P16432|HYCF_ECOLI RecName: Full=Formate hydrogenlyase subunit 6; Short=FHL subunit 6; AltName: Full=Hydrogenase-3 component F gi|41685|emb|CAA35551.1| hycF [Escherichia coli] gi|882613|gb|AAA69230.1| formate hydrogenlyase subunit 6 [Escherichia coli str. K-12 substr. MG1655] gi|1789075|gb|AAC75762.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli str. K-12 substr. MG1655] gi|85675541|dbj|BAE76797.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli str. K12 substr. W3110] gi|169890131|gb|ACB03838.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli str. K-12 substr. DH10B] gi|238861136|gb|ACR63134.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli BW2952] gi|260448230|gb|ACX38652.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia coli DH1] gi|299879311|gb|EFI87522.1| hydrogenase 4 subunit H [Escherichia coli MS 196-1] gi|300318095|gb|EFJ67879.1| hydrogenase 4 subunit H [Escherichia coli MS 175-1] gi|300453389|gb|EFK17009.1| hydrogenase 4 subunit H [Escherichia coli MS 116-1] gi|301076418|gb|EFK91224.1| hydrogenase 4 subunit H [Escherichia coli MS 146-1] gi|315137327|dbj|BAJ44486.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli DH1] gi|315615108|gb|EFU95745.1| formate hydrogenlyase subunit 6 [Escherichia coli 3431] gi|331036875|gb|EGI09099.1| formate hydrogenlyase subunit 6 (FHL subunit 6) (Hydrogenase-3component F) [Escherichia coli H736] gi|1093499|prf||2104213F hycF gene Length = 180 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 10/129 (7%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T +YP E + FRG+ ++CI C C CP+ A+T+E+ + Sbjct: 14 ATSSYPLEPIAVDKNFRGKPE-----QNPQQCIGCAACVNACPSNALTVETDLATGE--- 65 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 + ++ ++ CI+CG C+E CP AI +E A +++ L N Sbjct: 66 --LAWEFNLGHCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRP 123 Query: 152 IVRNIVTDS 160 D Sbjct: 124 FAVQKEIDY 132 >gi|301429512|dbj|BAJ12135.1| NADH dehydrogenase I chain H [Pseudomonas putida] Length = 261 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 48/104 (46%), Gaps = 3/104 (2%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M+ V + + + + + + F+ + T+ YP E PR+RG L R P+GE Sbjct: 161 MKYIFDIVHGFYTQ--LRSLVMIFGHAFRKRDTLQYPEEPVYLPPRYRGRIVLTRDPDGE 218 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 ERC+ +C CP I+++ DG + I+ +CI Sbjct: 219 ERCVYETVCAVACPVGCISLQKAE-TEDGRWYPDFFRINFSRCI 261 >gi|187731222|ref|YP_001881533.1| formate hydrogenlyase complex iron-sulfur subunit [Shigella boydii CDC 3083-94] gi|187428214|gb|ACD07488.1| formate hydrogenlyase, subunit F [Shigella boydii CDC 3083-94] Length = 180 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 10/129 (7%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T +YP E + FRG+ ++CI C C CP+ A+T+E+ + Sbjct: 14 ATSSYPLEPIAVDKNFRGKPE-----QNPQQCIGCAACVNACPSNALTVETDLATGE--- 65 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 + ++ ++ +CI+CG C+E CP AI +E A +++ L N Sbjct: 66 --LAWEFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNHP 123 Query: 152 IVRNIVTDS 160 D Sbjct: 124 FAVQKEIDY 132 >gi|254173268|ref|ZP_04879941.1| NAD(P)H-quinone oxidoreductase subunit I (NAD(P)Hdehydrogenase I subunit I) [Thermococcus sp. AM4] gi|214032677|gb|EEB73506.1| NAD(P)H-quinone oxidoreductase subunit I (NAD(P)Hdehydrogenase I subunit I) [Thermococcus sp. AM4] Length = 146 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 39/110 (35%), Gaps = 15/110 (13%) Query: 22 LCLRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80 LR + T +P E FRG+ +C+ C++C +CPA Sbjct: 9 TVLRNLVRKPATNLFPKTEPVPVPENFRGQLKYNVD-----KCVGCRMCVTVCPAGVFVY 63 Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 R + + +C+YC C + CP A+ F A+ Sbjct: 64 LPDIR---------KVALWTGRCVYCAQCVDVCPTGALQMSDEFLLASYD 104 >gi|298244917|ref|ZP_06968723.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Ktedonobacter racemifer DSM 44963] gi|297552398|gb|EFH86263.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Ktedonobacter racemifer DSM 44963] Length = 801 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 10/85 (11%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C++C C +CP ++ + R RY + +CI+CG C E CP A+ Sbjct: 689 HDTDCVSCGACVQVCPTGSLMMAE--------RHLTRYAFALDRCIFCGDCVEVCPHGAL 740 Query: 119 VEGPNFEFATETR--QELYYDKERL 141 E PNFE + R +++ +K+ L Sbjct: 741 GETPNFELSFFNRFGEDVTLEKQDL 765 >gi|206891147|ref|YP_002248826.1| NAD(P)H-quinone oxidoreductase chain I, (NAD(P)H dehydrogenase, chain I) [Thermodesulfovibrio yellowstonii DSM 11347] gi|206743085|gb|ACI22142.1| NAD(P)H-quinone oxidoreductase chain I, (NAD(P)H dehydrogenase, chain I) [Thermodesulfovibrio yellowstonii DSM 11347] Length = 162 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 36/126 (28%), Positives = 50/126 (39%), Gaps = 15/126 (11%) Query: 12 FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71 K + A L R+ K T YPF + RG + +CI C C Sbjct: 1 MFKSKIKALLLSSRH---KKITRPYPFVPVTPPENLRGRLEV-----DPNKCIGCGNCVR 52 Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 CP++ ITIE+ +CIYCG C ACP AI +E AT+ + Sbjct: 53 TCPSRLITIENYKDE-------RIVMFSSGRCIYCGRCAAACPEKAICITHEYELATDNK 105 Query: 132 QELYYD 137 ++L Sbjct: 106 KDLEIT 111 >gi|293410883|ref|ZP_06654459.1| hydrogenase 4 subunit H [Escherichia coli B354] gi|291471351|gb|EFF13835.1| hydrogenase 4 subunit H [Escherichia coli B354] Length = 181 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 47/138 (34%), Gaps = 13/138 (9%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + +R T+ YPF SP FRG+ L A Sbjct: 1 MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG----------ACA 47 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A + D + T + + + +CIYCG C+E CP AI NFE + +LY Sbjct: 48 CACPANALTIQTDDQQNTRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 107 Query: 136 YDKERLLNNGDRWESEIV 153 L R E Sbjct: 108 TRATFHLQRCSRCERPFA 125 >gi|284922435|emb|CBG35522.1| hydrogenase-4 component H [Escherichia coli 042] Length = 181 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 47/138 (34%), Gaps = 13/138 (9%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + +R T+ YPF SP FRG+ L A Sbjct: 1 MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG----------ACA 47 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A + D + T + + + +CIYCG C+E CP AI NFE + +LY Sbjct: 48 CACPANALTIQTDDQQNTRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 107 Query: 136 YDKERLLNNGDRWESEIV 153 L R E Sbjct: 108 TRATFHLQRCSRCERPFA 125 >gi|301329010|ref|ZP_07222037.1| hydrogenase 4 subunit H [Escherichia coli MS 78-1] gi|300844644|gb|EFK72404.1| hydrogenase 4 subunit H [Escherichia coli MS 78-1] Length = 181 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 47/138 (34%), Gaps = 13/138 (9%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + +R T+ YPF SP FRG+ L A Sbjct: 1 MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG----------ACA 47 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A + D + + + + + +CIYCG C+E CP AI NFE + +LY Sbjct: 48 CACPANALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 107 Query: 136 YDKERLLNNGDRWESEIV 153 L R E Sbjct: 108 TRATFHLQRCSRCERPFA 125 >gi|323967932|gb|EGB63344.1| 4Fe-4S binding domain-containing protein [Escherichia coli M863] gi|327252138|gb|EGE63810.1| hydrogenase-4 component H [Escherichia coli STEC_7v] Length = 181 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 48/138 (34%), Gaps = 13/138 (9%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + +R T+ YPF SP FRG+ L A Sbjct: 1 MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG----------ACA 47 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A + D + T + + + +CIYCG C+E CP AI NFE + +LY Sbjct: 48 CACPANALTIQTDDQQNTRTWQLYLGRCIYCGRCEEVCPTRAIQLTDNFELTVTNKADLY 107 Query: 136 YDKERLLNNGDRWESEIV 153 + L R E Sbjct: 108 TRAKFHLQRCSRCERPFA 125 >gi|212224721|ref|YP_002307957.1| Formate hydrogen lyase subunit 6 (hydrogenase 3 component F) [Thermococcus onnurineus NA1] gi|212009678|gb|ACJ17060.1| Formate hydrogen lyase subunit 6 (hydrogenase 3 component F) [Thermococcus onnurineus NA1] Length = 165 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 32/104 (30%), Positives = 42/104 (40%), Gaps = 10/104 (9%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T+ YPF K P +RG + CI C C CP A+ R D R Sbjct: 3 VTLKYPFVKLEAPPEYRGIPQI-----DATLCIGCGACVNACPPDAL-----LRIDDYNR 52 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 +D+ +CI C C+E CP AI FE A+ R + Sbjct: 53 GVREIVLDVGRCIRCARCEEVCPTGAIKLTNLFEAASPDRMDHV 96 >gi|218555264|ref|YP_002388177.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli IAI1] gi|300815876|ref|ZP_07096100.1| hydrogenase 4 subunit H [Escherichia coli MS 107-1] gi|218362032|emb|CAQ99639.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli IAI1] gi|300531805|gb|EFK52867.1| hydrogenase 4 subunit H [Escherichia coli MS 107-1] Length = 180 Score = 69.7 bits (169), Expect = 1e-10, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 10/129 (7%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T +YP E + FRG+ ++CI C C CP+ A+T+E+ + Sbjct: 14 ATSSYPLEPIAVDKNFRGKPE-----QNPQQCIGCAACVNACPSNALTVEADLATGE--- 65 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 + ++ ++ +CI+CG C+E CP AI +E A +++ +L + Sbjct: 66 --LAWEFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFVLCSCRVCNRP 123 Query: 152 IVRNIVTDS 160 D Sbjct: 124 FAVQKEIDY 132 >gi|300921420|ref|ZP_07137780.1| hydrogenase 4 subunit H [Escherichia coli MS 115-1] gi|300411654|gb|EFJ94964.1| hydrogenase 4 subunit H [Escherichia coli MS 115-1] Length = 181 Score = 69.4 bits (168), Expect = 1e-10, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 47/138 (34%), Gaps = 13/138 (9%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + +R T+ YPF SP FRG+ L A Sbjct: 1 MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG----------ACA 47 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A + D + + + + + +CIYCG C+E CP AI NFE + +LY Sbjct: 48 CACPANALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 107 Query: 136 YDKERLLNNGDRWESEIV 153 L R E Sbjct: 108 TRATFHLQRCSRCERPFA 125 >gi|330508774|ref|YP_004385202.1| 4Fe-4S ferredoxin, iron-sulfur binding domain-containing protein [Methanosaeta concilii GP-6] gi|328929582|gb|AEB69384.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Methanosaeta concilii GP-6] Length = 193 Score = 69.4 bits (168), Expect = 1e-10, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 50/129 (38%), Gaps = 8/129 (6%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC-HDGT 90 T YP RG H L CI C C +CP I + Sbjct: 23 VTRLYPEFMMELPDAERGIHEL-----DATICIGCGSCARVCPNSCIEMVHFKFGNPLKN 77 Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWES 150 ++ ID +C++CGLC + CPV+ + G A R+++ + L R+ + Sbjct: 78 KKMQFPQIDYGRCMFCGLCVDECPVECLKMGKKVIMAGWERKDIVKGPDFLAT--KRFSA 135 Query: 151 EIVRNIVTD 159 + V ++ + Sbjct: 136 KEVADLEAE 144 >gi|157156396|ref|YP_001463810.1| hydrogenase 4 subunit H [Escherichia coli E24377A] gi|300922194|ref|ZP_07138330.1| hydrogenase 4 subunit H [Escherichia coli MS 182-1] gi|312973274|ref|ZP_07787446.1| hydrogenase-4 component H [Escherichia coli 1827-70] gi|331653913|ref|ZP_08354914.1| hydrogenase-4 component H [Escherichia coli M718] gi|157078426|gb|ABV18134.1| iron-sulfur cluster-binding protein [Escherichia coli E24377A] gi|300421433|gb|EFK04744.1| hydrogenase 4 subunit H [Escherichia coli MS 182-1] gi|309702766|emb|CBJ02097.1| hydrogenase-4 component H [Escherichia coli ETEC H10407] gi|310331869|gb|EFP99104.1| hydrogenase-4 component H [Escherichia coli 1827-70] gi|323936380|gb|EGB32670.1| 4Fe-4S binding domain-containing protein [Escherichia coli E1520] gi|323941253|gb|EGB37438.1| 4Fe-4S binding domain-containing protein [Escherichia coli E482] gi|331048762|gb|EGI20838.1| hydrogenase-4 component H [Escherichia coli M718] Length = 181 Score = 69.4 bits (168), Expect = 1e-10, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 47/138 (34%), Gaps = 13/138 (9%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + +R T+ YPF SP FRG+ L A Sbjct: 1 MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG----------ACA 47 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A + D + + + + + +CIYCG C+E CP AI NFE + +LY Sbjct: 48 CACPANALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 107 Query: 136 YDKERLLNNGDRWESEIV 153 L R E Sbjct: 108 TRATFHLQRCSRCERPFA 125 >gi|193069699|ref|ZP_03050651.1| formate hydrogenlyase, subunit F [Escherichia coli E110019] gi|192957062|gb|EDV87513.1| formate hydrogenlyase, subunit F [Escherichia coli E110019] Length = 180 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 10/129 (7%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T +YP E + FRG+ ++CI C C CP+ A+T+E+ + Sbjct: 14 ATSSYPLEPIAVDKNFRGKPE-----QNPQQCIGCAACVNACPSNALTVETDLATGE--- 65 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 + ++ ++ +CI+CG C+E CP AI +E A +++ +L + Sbjct: 66 --LAWEFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFVLCSCRVCNRP 123 Query: 152 IVRNIVTDS 160 D Sbjct: 124 FAVQKEIDY 132 >gi|157157477|ref|YP_001464032.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli E24377A] gi|218696314|ref|YP_002403981.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli 55989] gi|256019501|ref|ZP_05433366.1| formate hydrogenlyase complex iron-sulfur subunit [Shigella sp. D9] gi|260856827|ref|YP_003230718.1| formate hydrogenlyase complex iron-sulfur protein HycF [Escherichia coli O26:H11 str. 11368] gi|260869395|ref|YP_003235797.1| formate hydrogenlyase complex iron-sulfur protein HycF [Escherichia coli O111:H- str. 11128] gi|293449036|ref|ZP_06663457.1| hycF [Escherichia coli B088] gi|300820495|ref|ZP_07100646.1| hydrogenase 4 subunit H [Escherichia coli MS 119-7] gi|300906777|ref|ZP_07124459.1| hydrogenase 4 subunit H [Escherichia coli MS 84-1] gi|300919244|ref|ZP_07135767.1| hydrogenase 4 subunit H [Escherichia coli MS 115-1] gi|300922238|ref|ZP_07138364.1| hydrogenase 4 subunit H [Escherichia coli MS 182-1] gi|301305389|ref|ZP_07211483.1| hydrogenase 4 subunit H [Escherichia coli MS 124-1] gi|301326245|ref|ZP_07219628.1| hydrogenase 4 subunit H [Escherichia coli MS 78-1] gi|331669453|ref|ZP_08370299.1| formate hydrogenlyase subunit 6 (FHL subunit 6) (Hydrogenase-3component F) [Escherichia coli TA271] gi|331678694|ref|ZP_08379368.1| formate hydrogenlyase subunit 6 (FHL subunit 6) (Hydrogenase-3component F) [Escherichia coli H591] gi|332280623|ref|ZP_08393036.1| formate hydrogenlyase complex iron-sulfur subunit [Shigella sp. D9] gi|157079507|gb|ABV19215.1| formate hydrogenlyase, subunit F [Escherichia coli E24377A] gi|218353046|emb|CAU98871.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli 55989] gi|257755476|dbj|BAI26978.1| formate hydrogenlyase complex iron-sulfur protein HycF [Escherichia coli O26:H11 str. 11368] gi|257765751|dbj|BAI37246.1| formate hydrogenlyase complex iron-sulfur protein HycF [Escherichia coli O111:H- str. 11128] gi|291322126|gb|EFE61555.1| hycF [Escherichia coli B088] gi|300401471|gb|EFJ85009.1| hydrogenase 4 subunit H [Escherichia coli MS 84-1] gi|300413689|gb|EFJ96999.1| hydrogenase 4 subunit H [Escherichia coli MS 115-1] gi|300421368|gb|EFK04679.1| hydrogenase 4 subunit H [Escherichia coli MS 182-1] gi|300526759|gb|EFK47828.1| hydrogenase 4 subunit H [Escherichia coli MS 119-7] gi|300839309|gb|EFK67069.1| hydrogenase 4 subunit H [Escherichia coli MS 124-1] gi|300847090|gb|EFK74850.1| hydrogenase 4 subunit H [Escherichia coli MS 78-1] gi|315254502|gb|EFU34470.1| hydrogenase 4 subunit H [Escherichia coli MS 85-1] gi|320202370|gb|EFW76940.1| Formate hydrogenlyase complex 3 iron-sulfur protein [Escherichia coli EC4100B] gi|323154936|gb|EFZ41128.1| formate hydrogenlyase subunit 6 [Escherichia coli EPECa14] gi|323180141|gb|EFZ65693.1| formate hydrogenlyase subunit 6 [Escherichia coli 1180] gi|323183247|gb|EFZ68644.1| formate hydrogenlyase subunit 6 [Escherichia coli 1357] gi|323946399|gb|EGB42427.1| 4Fe-4S binding domain-containing protein [Escherichia coli H120] gi|324119970|gb|EGC13848.1| 4Fe-4S binding domain-containing protein [Escherichia coli E1167] gi|331063121|gb|EGI35034.1| formate hydrogenlyase subunit 6 (FHL subunit 6) (Hydrogenase-3component F) [Escherichia coli TA271] gi|331073524|gb|EGI44845.1| formate hydrogenlyase subunit 6 (FHL subunit 6) (Hydrogenase-3component F) [Escherichia coli H591] gi|332102975|gb|EGJ06321.1| formate hydrogenlyase complex iron-sulfur subunit [Shigella sp. D9] Length = 180 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 54/129 (41%), Gaps = 10/129 (7%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T +YP E + FRG+ ++CI C C CP+ A+T+E+ + Sbjct: 14 ATSSYPLEPIAVDKNFRGKPE-----QNPQQCIGCAACVNACPSNALTVETDLATGE--- 65 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 + ++ ++ +CI+CG C+E CP AI +E A +++ +L + Sbjct: 66 --LAWEFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFVLCSCRVCNRP 123 Query: 152 IVRNIVTDS 160 D Sbjct: 124 FAVQKEIDY 132 >gi|300940270|ref|ZP_07154867.1| hydrogenase 4 subunit H [Escherichia coli MS 21-1] gi|300454911|gb|EFK18404.1| hydrogenase 4 subunit H [Escherichia coli MS 21-1] Length = 181 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 47/138 (34%), Gaps = 13/138 (9%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + +R T+ YPF SP FRG+ L A Sbjct: 1 MLKLLKTIMRT---GTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG----------ACA 47 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A + D + T + + + +CIYCG C+E CP AI NFE + +LY Sbjct: 48 CACPANALTIQTDDQQNTRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 107 Query: 136 YDKERLLNNGDRWESEIV 153 L R E Sbjct: 108 TRATFHLQRCSRCERPFA 125 >gi|194432084|ref|ZP_03064373.1| iron-sulfur cluster-binding protein [Shigella dysenteriae 1012] gi|194419613|gb|EDX35693.1| iron-sulfur cluster-binding protein [Shigella dysenteriae 1012] gi|320180472|gb|EFW55403.1| Hydrogenase-4 component H [Shigella boydii ATCC 9905] gi|332087932|gb|EGI93057.1| hydrogenase-4 component H [Shigella boydii 5216-82] gi|332089822|gb|EGI94923.1| hydrogenase-4 component H [Shigella dysenteriae 155-74] Length = 181 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 47/138 (34%), Gaps = 13/138 (9%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + +R T+ YPF SP FRG+ L A Sbjct: 1 MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG----------ACA 47 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A + D + + + + + +CIYCG C+E CP AI NFE + +LY Sbjct: 48 CACPANALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 107 Query: 136 YDKERLLNNGDRWESEIV 153 L R E Sbjct: 108 TRATFHLQRCSRCERPFA 125 >gi|218700946|ref|YP_002408575.1| hydrogenase 4 subunit H [Escherichia coli IAI39] gi|218370932|emb|CAR18751.1| hydrogenase 4, Fe-S subunit [Escherichia coli IAI39] Length = 181 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 47/138 (34%), Gaps = 13/138 (9%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + +R T+ YPF SP FRG+ L A Sbjct: 1 MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG----------ACA 47 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A + D + + + + + +CIYCG C+E CP AI NFE + +LY Sbjct: 48 CACPANALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 107 Query: 136 YDKERLLNNGDRWESEIV 153 L R E Sbjct: 108 TRATFHLQRCSRCERPFA 125 >gi|331664045|ref|ZP_08364955.1| hydrogenase-4 component H [Escherichia coli TA143] gi|331059844|gb|EGI31821.1| hydrogenase-4 component H [Escherichia coli TA143] Length = 181 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 47/138 (34%), Gaps = 13/138 (9%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + +R T+ YPF SP FRG+ L A Sbjct: 1 MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG----------ACA 47 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A + D + T + + + +CIYCG C+E CP AI NFE + +LY Sbjct: 48 CACPANALTIQTDDQQNTRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 107 Query: 136 YDKERLLNNGDRWESEIV 153 L R E Sbjct: 108 TRATFHLQRCSRCERPFA 125 >gi|170680047|ref|YP_001744671.1| hydrogenase 4 subunit H [Escherichia coli SMS-3-5] gi|170517765|gb|ACB15943.1| iron-sulfur cluster-binding protein [Escherichia coli SMS-3-5] Length = 181 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 47/138 (34%), Gaps = 13/138 (9%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + +R T+ YPF SP FRG+ L A Sbjct: 1 MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG----------ACA 47 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A + D + T + + + +CIYCG C+E CP AI NFE + +LY Sbjct: 48 CACPANALTIQTDDQQNTRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 107 Query: 136 YDKERLLNNGDRWESEIV 153 L R E Sbjct: 108 TRATFHLQRCSRCERPFA 125 >gi|218705987|ref|YP_002413506.1| hydrogenase 4 subunit H [Escherichia coli UMN026] gi|293405924|ref|ZP_06649916.1| hydrogenase 4 subunit H [Escherichia coli FVEC1412] gi|298381672|ref|ZP_06991271.1| hydrogenase 4 subunit H [Escherichia coli FVEC1302] gi|300897631|ref|ZP_07116036.1| hydrogenase 4 subunit H [Escherichia coli MS 198-1] gi|218433084|emb|CAR13979.1| hydrogenase 4, Fe-S subunit [Escherichia coli UMN026] gi|291428132|gb|EFF01159.1| hydrogenase 4 subunit H [Escherichia coli FVEC1412] gi|298279114|gb|EFI20628.1| hydrogenase 4 subunit H [Escherichia coli FVEC1302] gi|300358631|gb|EFJ74501.1| hydrogenase 4 subunit H [Escherichia coli MS 198-1] Length = 181 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 47/138 (34%), Gaps = 13/138 (9%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + +R T+ YPF SP FRG+ L A Sbjct: 1 MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG----------ACA 47 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A + D + T + + + +CIYCG C+E CP AI NFE + +LY Sbjct: 48 CACPANALTIQTDDQQNTRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 107 Query: 136 YDKERLLNNGDRWESEIV 153 L R E Sbjct: 108 TRATFHLQRCSRCERPFA 125 >gi|16130413|ref|NP_416983.1| hydrogenase 4, Fe-S subunit [Escherichia coli str. K-12 substr. MG1655] gi|89109294|ref|AP_003074.1| hydrogenase 4, Fe-S subunit [Escherichia coli str. K-12 substr. W3110] gi|170082098|ref|YP_001731418.1| hydrogenase 4, Fe-S subunit [Escherichia coli str. K-12 substr. DH10B] gi|238901653|ref|YP_002927449.1| hydrogenase 4, Fe-S subunit [Escherichia coli BW2952] gi|256021826|ref|ZP_05435691.1| hydrogenase 4 subunit H [Escherichia sp. 4_1_40B] gi|300951812|ref|ZP_07165625.1| hydrogenase 4 subunit H [Escherichia coli MS 116-1] gi|300958885|ref|ZP_07170991.1| hydrogenase 4 subunit H [Escherichia coli MS 175-1] gi|301023873|ref|ZP_07187604.1| hydrogenase 4 subunit H [Escherichia coli MS 196-1] gi|301644478|ref|ZP_07244475.1| hydrogenase 4 subunit H [Escherichia coli MS 146-1] gi|307139122|ref|ZP_07498478.1| hydrogenase 4 subunit H [Escherichia coli H736] gi|331643105|ref|ZP_08344240.1| hydrogenase-4 component H [Escherichia coli H736] gi|2494437|sp|P77423|HYFH_ECOLI RecName: Full=Hydrogenase-4 component H gi|1616957|gb|AAB88570.1| HyfH [Escherichia coli] gi|1788833|gb|AAC75541.1| hydrogenase 4, Fe-S subunit [Escherichia coli str. K-12 substr. MG1655] gi|1805547|dbj|BAA16376.1| hydrogenase 4, Fe-S subunit [Escherichia coli str. K12 substr. W3110] gi|169889933|gb|ACB03640.1| hydrogenase 4, Fe-S subunit [Escherichia coli str. K-12 substr. DH10B] gi|238861460|gb|ACR63458.1| hydrogenase 4, Fe-S subunit [Escherichia coli BW2952] gi|260448433|gb|ACX38855.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Escherichia coli DH1] gi|299880627|gb|EFI88838.1| hydrogenase 4 subunit H [Escherichia coli MS 196-1] gi|300314487|gb|EFJ64271.1| hydrogenase 4 subunit H [Escherichia coli MS 175-1] gi|300448959|gb|EFK12579.1| hydrogenase 4 subunit H [Escherichia coli MS 116-1] gi|301077223|gb|EFK92029.1| hydrogenase 4 subunit H [Escherichia coli MS 146-1] gi|315137111|dbj|BAJ44270.1| hydrogenase 4 subunit H [Escherichia coli DH1] gi|315615731|gb|EFU96363.1| hydrogenase-4 component H [Escherichia coli 3431] gi|331039903|gb|EGI12123.1| hydrogenase-4 component H [Escherichia coli H736] gi|332344308|gb|AEE57642.1| hydrogenase-4, subunit H [Escherichia coli UMNK88] Length = 181 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 47/138 (34%), Gaps = 13/138 (9%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + +R T+ YPF SP FRG+ L A Sbjct: 1 MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG----------ACA 47 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A + D + + + + + +CIYCG C+E CP AI NFE + +LY Sbjct: 48 CACPANALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 107 Query: 136 YDKERLLNNGDRWESEIV 153 L R E Sbjct: 108 TRATFHLQRCSRCERPFA 125 >gi|209920159|ref|YP_002294243.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli SE11] gi|209913418|dbj|BAG78492.1| formate hydrogenlyase subunit [Escherichia coli SE11] gi|324017033|gb|EGB86252.1| hydrogenase 4 subunit H [Escherichia coli MS 117-3] Length = 180 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 10/104 (9%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T +YP E + FRG+ ++CI C C CP+ A+T+E+ + Sbjct: 14 ATSSYPLEPIAVDKNFRGKPE-----QNPQQCIGCAACVNACPSNALTVETDLATGE--- 65 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 + ++ ++ +CI+CG C+E CP AI +E A +++ Sbjct: 66 --LAWEFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFL 107 >gi|301024710|ref|ZP_07188353.1| hydrogenase 4 subunit H [Escherichia coli MS 69-1] gi|331673943|ref|ZP_08374706.1| hydrogenase-4 component H [Escherichia coli TA280] gi|300396441|gb|EFJ79979.1| hydrogenase 4 subunit H [Escherichia coli MS 69-1] gi|331069216|gb|EGI40608.1| hydrogenase-4 component H [Escherichia coli TA280] Length = 181 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 47/138 (34%), Gaps = 13/138 (9%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + +R T+ YPF SP FRG+ L A Sbjct: 1 MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG----------ACA 47 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A + D + + + + + +CIYCG C+E CP AI NFE + +LY Sbjct: 48 CACPANALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 107 Query: 136 YDKERLLNNGDRWESEIV 153 L R E Sbjct: 108 TRATFHLQRCSRCERPFA 125 >gi|323977334|gb|EGB72420.1| 4Fe-4S binding domain-containing protein [Escherichia coli TW10509] Length = 181 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 34/138 (24%), Positives = 47/138 (34%), Gaps = 13/138 (9%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + +R T+ YPF SP FRG+ L A Sbjct: 1 MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG----------ACA 47 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A + D + T + + + +CIYCG C+E CP AI NFE + +LY Sbjct: 48 CACPANALTIQTDDQQNTRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 107 Query: 136 YDKERLLNNGDRWESEIV 153 L R E Sbjct: 108 TRATFHLQRCSRCERPFA 125 >gi|268324500|emb|CBH38088.1| hypothetical protein containing 4Fe-4S binding domains [uncultured archaeon] Length = 244 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 31/128 (24%), Positives = 48/128 (37%), Gaps = 12/128 (9%) Query: 17 VGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 A + T YP E+ FRG ERCI+C C +CPA Sbjct: 19 ASALATAAKEVVAPLSITTQYPRERRKWPDCFRGYILF-----DPERCISCFECSFVCPA 73 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 AI ++ +D KCI+C C ++CP A+ + + E++ Sbjct: 74 NAIWMKEAKSG------RFYPTLDYGKCIFCHFCVDSCPGGALRTTKIHDVSYTNMDEMF 127 Query: 136 YDKERLLN 143 D E ++ Sbjct: 128 TDTEEMIE 135 Score = 42.0 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 5/61 (8%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + CIACK+CE +C + A++ + +R +ID C CGLC + Sbjct: 179 MVSVCVDRASCIACKVCEKVCESGAVSSSLDEA-----KMVIRMEIDSEVCTGCGLCVKE 233 Query: 113 C 113 C Sbjct: 234 C 234 >gi|157954630|gb|ABW05547.1| formate hydrogenlyase subunit G [Thermococcus litoralis DSM 5473] Length = 165 Score = 69.4 bits (168), Expect = 2e-10, Method: Composition-based stats. Identities = 30/105 (28%), Positives = 43/105 (40%), Gaps = 10/105 (9%) Query: 31 KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT 90 T YPFE P +RG + C+ C C CP A+ + D Sbjct: 2 PVTKYYPFEPEQAPPEYRGIPEI-----DPRLCVGCGACVNACPPDAL-----IKIDDYE 51 Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 + T + +D+ +CI C C+E CP AI FE A++ R Sbjct: 52 KGTRKIVLDIGRCIRCARCEEVCPTGAIRLTQEFEAASDDRSSHV 96 >gi|56414800|ref|YP_151875.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197363728|ref|YP_002143365.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56129057|gb|AAV78563.1| formate hydrogenlyase subunit 6 [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197095205|emb|CAR60756.1| formate hydrogenlyase subunit 6 [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 180 Score = 69.0 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 10/104 (9%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T +YP E + FRG+ + ++CI C C CP+ A+T+E+ ++ Sbjct: 14 ATSSYPLEPIAVDKNFRGKPE-----HNPQQCIGCAACVNACPSNALTVETLLATNE--- 65 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 + + ++ +CI+CG C+E CP AI +E A +++ Sbjct: 66 --LAWQFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFL 107 >gi|332999463|gb|EGK19048.1| formate hydrogenlyase subunit 6 [Shigella flexneri VA-6] Length = 180 Score = 69.0 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 10/129 (7%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T +YP E + FRG+ ++CI C C CP+ A+T+E+ + Sbjct: 14 ATSSYPLEPIAVDKNFRGKPE-----QNPQQCIGCAACVNACPSNALTVETDLATGE--- 65 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 + ++ ++ +CI+CG C+E CP AI +E A ++ L N Sbjct: 66 --LAWEFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKENFLQQSRFALCNCRVCNRP 123 Query: 152 IVRNIVTDS 160 D Sbjct: 124 FAVQKEIDY 132 >gi|11500028|ref|NP_071278.1| NADH dehydrogenase subunit I [Archaeoglobus fulgidus DSM 4304] Length = 148 Score = 69.0 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 33/104 (31%), Positives = 48/104 (46%), Gaps = 13/104 (12%) Query: 31 KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT 90 + T+ YP E+ FRG E+CI+C C ICPA AI +E R + G Sbjct: 34 RITVEYPRERRRYPECFRGFIVF-----DREKCISCFRCAQICPANAIQMEYFDRAYPG- 87 Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134 ID KCI+C C ++CP A+ + A ++ E+ Sbjct: 88 -------IDYAKCIFCHFCVDSCPTGALNTSKVHDVAFKSMDEM 124 >gi|78043124|ref|YP_360649.1| carbon monoxide-induced hydrogenase, iron-sulfur cluster-binding subunit [Carboxydothermus hydrogenoformans Z-2901] gi|77995239|gb|ABB14138.1| carbon monoxide-induced hydrogenase, iron-sulfur cluster-binding subunit [Carboxydothermus hydrogenoformans Z-2901] Length = 165 Score = 69.0 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 48/117 (41%), Gaps = 10/117 (8%) Query: 20 FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79 + LR FK+ TT YPF + RG+ CIAC++CE +C AI Sbjct: 5 LKIALRNLFKSPTTDPYPFGETFVPKGLRGKA-----KYNAGACIACRMCEHVCAGGAIQ 59 Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 I + + + + C +CGLC+ CP AI ++ A + Y Sbjct: 60 I-----REVADKSGLEFILWHNTCTFCGLCEYYCPTKAIRLTEDYHTAHRQEDKYRY 111 >gi|24113817|ref|NP_708327.1| hydrogenase 4 subunit H [Shigella flexneri 2a str. 301] gi|30063864|ref|NP_838035.1| hydrogenase 4 subunit H [Shigella flexneri 2a str. 2457T] gi|110806419|ref|YP_689939.1| hydrogenase 4 subunit H [Shigella flexneri 5 str. 8401] gi|24052904|gb|AAN44034.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 2a str. 301] gi|30042119|gb|AAP17845.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 2a str. 2457T] gi|110615967|gb|ABF04634.1| hydrogenase 4 Fe-S subunit [Shigella flexneri 5 str. 8401] gi|281601891|gb|ADA74875.1| Hydrogenase 4 Fe-S subunit [Shigella flexneri 2002017] gi|313650946|gb|EFS15346.1| hydrogenase-4 component H [Shigella flexneri 2a str. 2457T] gi|332755131|gb|EGJ85496.1| hydrogenase-4 component H [Shigella flexneri 4343-70] gi|332755531|gb|EGJ85895.1| hydrogenase-4 component H [Shigella flexneri K-671] gi|332756410|gb|EGJ86761.1| hydrogenase-4 component H [Shigella flexneri 2747-71] gi|333001992|gb|EGK21558.1| hydrogenase-4 component H [Shigella flexneri K-218] gi|333016469|gb|EGK35800.1| hydrogenase-4 component H [Shigella flexneri K-304] Length = 181 Score = 69.0 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 47/138 (34%), Gaps = 13/138 (9%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + +R T+ YPF SP FRG+ L A Sbjct: 1 MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG----------ACA 47 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A + D + + + + + +CIYCG C+E CP AI NFE + +LY Sbjct: 48 CACPANALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTHKADLY 107 Query: 136 YDKERLLNNGDRWESEIV 153 L R E Sbjct: 108 THATFHLQRCSRCERPFA 125 >gi|320100263|ref|YP_004175855.1| NADH dehydrogenase subunit I [Desulfurococcus mucosus DSM 2162] gi|319752615|gb|ADV64373.1| NADH dehydrogenase subunit I [Desulfurococcus mucosus DSM 2162] Length = 172 Score = 69.0 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 31/107 (28%), Positives = 45/107 (42%), Gaps = 12/107 (11%) Query: 31 KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT 90 + T YPFE+ +P FRG+ + +CI C C CP A+ + Sbjct: 19 RATRKYPFEEPLVTPDFRGKVEI-----DASKCIGCGACVNACPPNALQLIEDSEK---- 69 Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 + + +CI+C C + CPV AI FE AT +LY Sbjct: 70 ---LVLRYFIGRCIFCWRCIDVCPVKAIKGTREFELATNDVADLYVH 113 >gi|240102092|ref|YP_002958400.1| NADH-plastoquinone oxidoreductase subunit [Thermococcus gammatolerans EJ3] gi|239909645|gb|ACS32536.1| membrane bound hydrogenase, MbhN subunit (MbhN) [Thermococcus gammatolerans EJ3] Length = 145 Score = 69.0 bits (167), Expect = 2e-10, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 42/113 (37%), Gaps = 15/113 (13%) Query: 22 LCLRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80 L+ K T +P E FRG ++C+ C++C +CPA Sbjct: 9 TVLKNLTKKPATNLFPKTEPVPVPEDFRGMI-----TYDVDKCVGCRMCYNVCPAGVFVC 63 Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 R + + +CIYCG C + CP A+ +F A+ + Sbjct: 64 LPEIR---------KVALWTARCIYCGQCVDVCPTGALKLSRDFLLASYDNHD 107 >gi|300817747|ref|ZP_07097962.1| hydrogenase 4 subunit H [Escherichia coli MS 107-1] gi|300529735|gb|EFK50797.1| hydrogenase 4 subunit H [Escherichia coli MS 107-1] Length = 181 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 47/138 (34%), Gaps = 13/138 (9%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + +R T+ YPF SP FRG+ L A Sbjct: 1 MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG----------ACA 47 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A + D + + + + + +CIYCG C+E CP AI NFE + +LY Sbjct: 48 CACPANALTIQTDDQQNSHTWQLYLRRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 107 Query: 136 YDKERLLNNGDRWESEIV 153 L R E Sbjct: 108 TRATFHLQRCSRCERPFA 125 >gi|260856583|ref|YP_003230474.1| hydrogenase 4, Fe-S subunit HyfH [Escherichia coli O26:H11 str. 11368] gi|260869178|ref|YP_003235580.1| hydrogenase 4, Fe-S subunit HyfH [Escherichia coli O111:H- str. 11128] gi|257755232|dbj|BAI26734.1| hydrogenase 4, Fe-S subunit HyfH [Escherichia coli O26:H11 str. 11368] gi|257765534|dbj|BAI37029.1| hydrogenase 4, Fe-S subunit HyfH [Escherichia coli O111:H- str. 11128] gi|323156091|gb|EFZ42250.1| hydrogenase-4 component H [Escherichia coli EPECa14] gi|323177392|gb|EFZ62980.1| hydrogenase-4 component H [Escherichia coli 1180] Length = 181 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 47/138 (34%), Gaps = 13/138 (9%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + +R T+ YPF SP FRG+ L A Sbjct: 1 MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG----------ACA 47 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A + D + + + + + +CIYCG C+E CP AI NFE + +LY Sbjct: 48 CACPANALTIQTDDQQNSRTWQLYLRRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLY 107 Query: 136 YDKERLLNNGDRWESEIV 153 L R E Sbjct: 108 TRATFHLQRCSRCERPFA 125 >gi|256017365|ref|ZP_05431230.1| hydrogenase 4 subunit H [Shigella sp. D9] gi|332278364|ref|ZP_08390777.1| iron-sulfur cluster-binding protein [Shigella sp. D9] gi|323944708|gb|EGB40775.1| 4Fe-4S binding domain-containing protein [Escherichia coli H120] gi|332100716|gb|EGJ04062.1| iron-sulfur cluster-binding protein [Shigella sp. D9] Length = 181 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 33/141 (23%), Positives = 48/141 (34%), Gaps = 13/141 (9%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + +R T+ YPF SP FRG+ L A Sbjct: 1 MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG----------ACA 47 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A + D + + + + + +CIYCG C+E CP AI NFE + +LY Sbjct: 48 CACPANALTIQTDDQQNSRTWQLYLRRCIYCGRCEEVCPTRAIQLTNNFEPTVTNKADLY 107 Query: 136 YDKERLLNNGDRWESEIVRNI 156 L R E + Sbjct: 108 TRATFHLQRCSRCERPFAQQK 128 >gi|319789456|ref|YP_004151089.1| NADH-ubiquinone oxidoreductase 23 kda subunit [Thermovibrio ammonificans HB-1] gi|317113958|gb|ADU96448.1| NADH-ubiquinone oxidoreductase 23 kda subunit [Thermovibrio ammonificans HB-1] Length = 136 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 37/93 (39%), Gaps = 11/93 (11%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 ++ F T+ YP E P +RG + EE CI C CE +CP AI Sbjct: 8 TIKNLFSKPVTVKYPQELSPPPPNYRGVIVYK-----EELCIFCTKCELVCPPGAIRFTY 62 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 ++ + CIYCG C ACP Sbjct: 63 SEDGS------KKFHYNPYLCIYCGECVRACPK 89 >gi|295105898|emb|CBL03441.1| hypothetical protein [Gordonibacter pamelaeae 7-10-1-b] Length = 122 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 32/114 (28%), Positives = 48/114 (42%), Gaps = 15/114 (13%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80 + L+ F TI YP E+ + P +G N + CI C +C CP AIT+ Sbjct: 8 KMTLKSLFGKPETIQYPVEQKTPPPGLKGHV-----TNNVDACILCGICMKRCPCDAITV 62 Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF-EFATETRQE 133 + R + I+ +C+ CG C CP + P + ATE R + Sbjct: 63 DKPART---------WSINRFRCVQCGTCVRECPKQCLAMEPTYTPPATEKRSD 107 >gi|317486366|ref|ZP_07945194.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316922355|gb|EFV43613.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 170 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 30/99 (30%), Positives = 40/99 (40%), Gaps = 14/99 (14%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 LR F K T YP K +RG N E CI C++C CPAQ I+ + Sbjct: 6 TILRNFLKRPATRKYPMVKRDPFSNYRGRLI-----NNVESCIFCRMCSTKCPAQCISTD 60 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + D C+YCG+C E CP ++ Sbjct: 61 PKEAF---------WGYDPFSCVYCGICVEVCPTKSLFM 90 >gi|213865415|ref|ZP_03387534.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 81 Score = 68.6 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 23/42 (54%), Positives = 29/42 (69%) Query: 104 IYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNG 145 I+CGLC+EACP AI P+FE RQ+L Y+KE LL +G Sbjct: 1 IFCGLCEEACPTTAIQLTPDFELGEYKRQDLVYEKEDLLISG 42 >gi|333001623|gb|EGK21191.1| hydrogenase-4 component H [Shigella flexneri VA-6] Length = 181 Score = 68.2 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 47/138 (34%), Gaps = 13/138 (9%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + +R T+ YPF SP FRG+ L A Sbjct: 1 MLKLLKTIMR---AGTPTVKYPFAPLEVSPGFRGKPDLMPSQCIACG----------ACA 47 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A + D + + + + + +CIYCG C+E CP AI NFE + +LY Sbjct: 48 CACPANALTIQTDDQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTHKADLY 107 Query: 136 YDKERLLNNGDRWESEIV 153 L R E Sbjct: 108 THATFHLQRCSRCERPFA 125 >gi|283835552|ref|ZP_06355293.1| formate hydrogenlyase subunit 6 [Citrobacter youngae ATCC 29220] gi|291068762|gb|EFE06871.1| formate hydrogenlyase subunit 6 [Citrobacter youngae ATCC 29220] Length = 180 Score = 68.2 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 53/128 (41%), Gaps = 10/128 (7%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 T +YP E + FRG+ + ++CI C C CP+ A+T+E+ ++ Sbjct: 15 TSSYPLEPIAVDKNFRGKPE-----HNPQQCIGCAACVNACPSNALTVETDLVTNE---- 65 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEI 152 + + ++ +CI+C C+E CP AI +E A +++ L N Sbjct: 66 -LAWQFNLGRCIFCARCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFSLCNCRVCNRPF 124 Query: 153 VRNIVTDS 160 D Sbjct: 125 AVQKEIDY 132 >gi|298530615|ref|ZP_07018017.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfonatronospira thiodismutans ASO3-1] gi|298509989|gb|EFI33893.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfonatronospira thiodismutans ASO3-1] Length = 179 Score = 68.2 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 33/154 (21%), Positives = 52/154 (33%), Gaps = 30/154 (19%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER--CIACKLCE 70 + + + F + T++YP + + +RG L + CIAC C Sbjct: 13 MWSLLVGMKVTAVNFKSPQITVHYPRQVTNL-DGYRGHIELVPSDEDPTKSKCIACSNCV 71 Query: 71 AICPAQAITIESGPRCHDGTRRTVR---------------------------YDIDMIKC 103 ICP I++++ + +D C Sbjct: 72 RICPGACISLKASKPKKKAAEEKKAAPGTETETQPEGKKEAPPKKAKPELQSFVLDYNYC 131 Query: 104 IYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 CGLC E+CP A+ + A TRQE YD Sbjct: 132 CLCGLCVESCPSGALRYSSDVYVAGFTRQEFVYD 165 >gi|258646995|ref|ZP_05734464.1| formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit [Dialister invisus DSM 15470] gi|260404436|gb|EEW97983.1| formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit [Dialister invisus DSM 15470] Length = 412 Score = 68.2 bits (165), Expect = 3e-10, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 48/112 (42%), Gaps = 14/112 (12%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 FK T +YP + + P RG N E+CI C CE CP+ AI I+ Sbjct: 13 NLFKPPVTSSYPLQPRTPLPIDRGHIV-----NQWEKCILCGACERACPSGAIRID---- 63 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 R+ ++ I+ C+ CG C E CP+ + + + + E+ + Sbjct: 64 -----RKNRKWIINPYACVQCGACVEQCPMKCLAMEGMYTEPSTEKSEIVHT 110 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 9/72 (12%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 N +C+ C +C C A+ I+ R+ + ID C+ CG+C E CP Sbjct: 196 NDVSKCVLCGMCLRGCVGGALDID---------RKRRTWTIDPAACVQCGVCVEHCPKQC 246 Query: 118 IVEGPNFEFATE 129 + + F + Sbjct: 247 LSLNEAYTFTAD 258 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 31/94 (32%), Gaps = 9/94 (9%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P E S R E N C+ C CP A+ I+ R+ + Sbjct: 301 PKETLSGKETERKETEKIPVINDVSECVLCGKYTDGCPGSALEID---------RKNRTW 351 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 ID C+ C +C E CP + + + Sbjct: 352 TIDPAACVQCDICVENCPKQCLSMNKEYVLGADD 385 >gi|326202294|ref|ZP_08192163.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium papyrosolvens DSM 2782] gi|325987412|gb|EGD48239.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium papyrosolvens DSM 2782] Length = 124 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 44/118 (37%), Gaps = 13/118 (11%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + T YPFEK RG+ ++CI C +C+ CPA Sbjct: 1 MFKMMENVFKNLASKPATRMYPFEKREPFKDSRGQIE----GIEIDKCIFCGICQRKCPA 56 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 AI + + ++I+ KC+ C C EACP IV + A ++ Sbjct: 57 NAIVVNKAEKS---------WEINQFKCVICNACVEACPKKCIVASAEHKTAATKKEN 105 >gi|224373086|ref|YP_002607458.1| carbon monoxide-induced hydrogenase, iron-sulfur cluster-binding subunit [Nautilia profundicola AmH] gi|223589184|gb|ACM92920.1| carbon monoxide-induced hydrogenase, iron-sulfur cluster-binding subunit [Nautilia profundicola AmH] Length = 167 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 44/117 (37%), Gaps = 12/117 (10%) Query: 20 FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79 + +R K TT YPF + RG+ + + C AC CE +CP+ AI Sbjct: 5 LKIAIRNLLKGPTTDPYPFGPTFIPDKLRGKLKV-----DAKACTACGTCEEVCPSGAIH 59 Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 I + C +CG C+ CP AI +F A ++ + Sbjct: 60 ITKNENV-------YVHTTWYNTCCFCGNCEFFCPTGAIKLTNDFHTANTEAEKFKF 109 >gi|218559710|ref|YP_002392623.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli S88] gi|218366479|emb|CAR04231.1| formate hydrogenlyase complex iron-sulfur protein [Escherichia coli S88] Length = 180 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 52/129 (40%), Gaps = 10/129 (7%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T +YP E + FRG+ ++CI C C CP+ A+T+E+ + Sbjct: 14 ATSSYPLEPIAVDKNFRGKPE-----QNPQQCIGCAACVNACPSNALTVETDLATGE--- 65 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 + + D+ +CI+CG C+E CP AI +E A +++ L N Sbjct: 66 --LAWQFDLGRCIFCGRCEEFCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRP 123 Query: 152 IVRNIVTDS 160 D Sbjct: 124 FAVQKEIDY 132 >gi|34558136|ref|NP_907951.1| formate hydrogenlyase complex iron-sulfur subunit [Wolinella succinogenes DSM 1740] gi|34483854|emb|CAE10851.1| HYDROGENASE 4 FE-S SUBUNIT [Wolinella succinogenes] Length = 179 Score = 68.2 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 51/116 (43%), Gaps = 16/116 (13%) Query: 31 KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT 90 K T YPF + FRG+ A CI C C CP+ AIT+E + Sbjct: 13 KITHQYPFAPYKVADHFRGKPAYVFD-----LCIGCAACGVACPSNAITVELNQEQNK-- 65 Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGD 146 + ++ D +CI+CG C E CP AI FE A + +DK L+ G+ Sbjct: 66 ---LIWEFDCGRCIFCGRCDEVCPTGAIRLSEEFELAVK------FDKSALIQRGE 112 >gi|90425975|ref|YP_534345.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodopseudomonas palustris BisB18] gi|90107989|gb|ABD90026.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodopseudomonas palustris BisB18] Length = 166 Score = 67.8 bits (164), Expect = 4e-10, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 12/108 (11%) Query: 20 FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79 + K +T +PF + +T +RG+ E C+ C +CE +C A AI Sbjct: 4 LKILWDNLRKGPSTEAFPFGEATTPAGYRGKVTF-----DEATCVGCNMCEHVCAAGAIR 58 Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 + + I C+ CGLC CP AI ++ + Sbjct: 59 FAEADDG-------LHFVIWHNTCVSCGLCAYYCPTKAIKLSNDWHLS 99 >gi|332766296|gb|EGJ96506.1| 4Fe-4S binding domain protein [Shigella flexneri 2930-71] Length = 173 Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 44/127 (34%), Gaps = 10/127 (7%) Query: 27 FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC 86 T+ YPF SP FRG+ L A A + Sbjct: 1 MRAGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG----------ACACACPANALTIQ 50 Query: 87 HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGD 146 D + + + + + +CIYCG C+E CP AI NFE + +LY L Sbjct: 51 TDDQQNSRTWQLYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTHKADLYTHATFHLQRCS 110 Query: 147 RWESEIV 153 R E Sbjct: 111 RCERPFA 117 >gi|298244919|ref|ZP_06968725.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ktedonobacter racemifer DSM 44963] gi|297552400|gb|EFH86265.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ktedonobacter racemifer DSM 44963] Length = 246 Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 38/90 (42%), Gaps = 4/90 (4%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYP----NGEERCIACKL 68 ++ + L + F+ K T YP+EK PR RG L +C AC L Sbjct: 1 MRGILEGMSLTFSHMFRPKVTRLYPYEKPKLPPRSRGLIQLIAQEGLKTEFNLKCEACLL 60 Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDI 98 CE CP +AITIE P R + I Sbjct: 61 CEKACPPRAITIEYEPMYEWRERPWYKSYI 90 >gi|297521336|ref|ZP_06939722.1| formate hydrogenlyase complex iron-sulfur subunit [Escherichia coli OP50] Length = 104 Score = 67.8 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 10/101 (9%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T +YP E + FRG+ ++CI C C CP+ A+T+E+ + Sbjct: 14 ATSSYPLEPIAVDKNFRGKPE-----QNPQQCIGCAACVNACPSNALTVETDLATGE--- 65 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 + ++ ++ +CI+CG C+E CP AI +E A ++ Sbjct: 66 --LAWEFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKE 104 >gi|303241787|ref|ZP_07328283.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acetivibrio cellulolyticus CD2] gi|302590668|gb|EFL60420.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acetivibrio cellulolyticus CD2] Length = 121 Score = 67.4 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 55/124 (44%), Gaps = 14/124 (11%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80 F+ T+ YP K + RG+ L E C+ C +C+ CP AIT+ Sbjct: 8 KTIFANLFRKPATLMYPVVKREFTRNTRGKVEL-----NIETCVFCGICQKKCPTGAITV 62 Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140 + R +++I+ KCI C C E+CP + G + + T+ + ++ R Sbjct: 63 D---------RANKKWEIERFKCIACSYCVESCPKKCLAMGNEYSKPSATKDKEVFEDAR 113 Query: 141 LLNN 144 +L+N Sbjct: 114 VLDN 117 >gi|156937933|ref|YP_001435729.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Ignicoccus hospitalis KIN4/I] gi|156566917|gb|ABU82322.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Ignicoccus hospitalis KIN4/I] Length = 189 Score = 67.4 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 6/107 (5%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + Y +++ T YPFEK FRG E+CI C C CP Sbjct: 22 VLKSLKAVAEYLVQSRPTTLYPFEKNDLPENFRGVLV-----YDIEKCIGCGACVLACPN 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + GP+ + + + C++CGLC +ACP A Sbjct: 77 NCLYRRPGPKTE-KNKPGIYIAFEPTHCLFCGLCVDACPPVASSLRH 122 >gi|147919461|ref|YP_686799.1| hydrogenase, small subunit-like protein (HycG-like) [uncultured methanogenic archaeon RC-I] gi|110622195|emb|CAJ37473.1| hydrogenase, small subunit-like protein (HycG-like) [uncultured methanogenic archaeon RC-I] Length = 247 Score = 67.4 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 50/129 (38%), Gaps = 26/129 (20%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 Y K T YP E +F G A+ + +C C C A CP+ AI Sbjct: 9 YLKKGVVTSKYPAEPFRAPEKFLGMPAI-----DKSKCDRCGKCLAACPSGAINDN---- 59 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNG 145 +DI +CI+C C + C AI +E A++ + + + ++G Sbjct: 60 ----------FDISPGRCIFCAACADVC--SAIRMTGEYELASKAKPDF-----DVESSG 102 Query: 146 DRWESEIVR 154 E +I + Sbjct: 103 RELEKKIKK 111 >gi|313904891|ref|ZP_07838263.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eubacterium cellulosolvens 6] gi|313470324|gb|EFR65654.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eubacterium cellulosolvens 6] Length = 170 Score = 67.4 bits (163), Expect = 6e-10, Method: Composition-based stats. Identities = 32/112 (28%), Positives = 47/112 (41%), Gaps = 15/112 (13%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 L+ FK T YP E R RG A+ + CI+C +C+ CP AI ++ Sbjct: 10 ALKNLFKKPVTTTYPAEPAVYPERSRGHVAI-----DVDGCISCGICQLSCPLGAIKVD- 63 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF-EFATETRQE 133 ++ +DID CI CG C E CP + + E E ++ Sbjct: 64 --------KKEGTWDIDRFDCIACGYCVEKCPKKCLSMVSGYQEPGREKYED 107 >gi|305664296|ref|YP_003860584.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ignisphaera aggregans DSM 17230] gi|304378865|gb|ADM28704.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ignisphaera aggregans DSM 17230] Length = 127 Score = 67.4 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 46/108 (42%), Gaps = 7/108 (6%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE- 81 L+ + TI +P + FRG+H +CI C +C CP+ IT++ Sbjct: 7 ALKNLLRRPATIQFPRKPTPVEKDFRGKH-----YADLRKCIGCSICAMECPSNCITMKR 61 Query: 82 -SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 R + I+ C++C C + CPV+A + ++ +T Sbjct: 62 LPEGIKLKHNPRGLYPVIEYNACVFCYRCVKVCPVNAYITTNDYMLST 109 >gi|307265661|ref|ZP_07547214.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306919305|gb|EFN49526.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 123 Score = 67.4 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 48/124 (38%), Gaps = 14/124 (11%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + T YPFEK + RG N ++CI C +C+ +CP+ Sbjct: 1 MLDMLKNVVSNLTHKPVTRKYPFEKREPFEKARGHI-----KNDIDKCILCGICQRVCPS 55 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 I R+ + +CI CG+C E+CP ++ + + + E+ Sbjct: 56 NCI---------QVNRKEGTWAFQPFECIICGVCVESCPTKSLTMAKEYRPISNEKYEIV 106 Query: 136 YDKE 139 KE Sbjct: 107 QKKE 110 >gi|317054476|ref|YP_004118501.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Pantoea sp. At-9b] gi|316952471|gb|ADU71945.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pantoea sp. At-9b] Length = 181 Score = 67.4 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 45/104 (43%), Gaps = 10/104 (9%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T +YP + FRG+ + ++CI C C CP+ A+++ + Sbjct: 14 ATQSYPLQPIDVDANFRGKPE-----HNAQQCIGCAACVNACPSNALSVATDLTAGQ--- 65 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 + + ++ +CI+C C+E CP AI FE A + + Sbjct: 66 --LAWTFNLGRCIFCARCEEVCPTAAITLSQQFELAVWNKADFL 107 >gi|218548078|ref|YP_002381869.1| hydrogenase 4 subunit H [Escherichia fergusonii ATCC 35469] gi|218355619|emb|CAQ88230.1| Hydrogenase-4 component H [Escherichia fergusonii ATCC 35469] gi|324112979|gb|EGC06955.1| 4Fe-4S binding domain-containing protein [Escherichia fergusonii B253] gi|325496481|gb|EGC94340.1| hydrogenase 4 subunit H [Escherichia fergusonii ECD227] Length = 182 Score = 67.4 bits (163), Expect = 7e-10, Method: Composition-based stats. Identities = 33/144 (22%), Positives = 49/144 (34%), Gaps = 13/144 (9%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + +R + T+ YPF SP FRG+ L A Sbjct: 1 MLKLLKTIMR---AGEATVKYPFAPLEVSPGFRGKPELDAAQCIACA----------ACA 47 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 A + D + T + + + +CIYCG C+E CP AI NFE + +LY Sbjct: 48 SACPANALTILTDEQQDTRTWQLFLGRCIYCGRCEEVCPTRAITLSENFELTVTNKADLY 107 Query: 136 YDKERLLNNGDRWESEIVRNIVTD 159 L + + D Sbjct: 108 TRATFHLQHCKQCGKPFAAQKSVD 131 >gi|125975498|ref|YP_001039408.1| 4Fe-4S ferredoxin, iron-sulfur binding [Clostridium thermocellum ATCC 27405] gi|256004214|ref|ZP_05429197.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium thermocellum DSM 2360] gi|281419469|ref|ZP_06250483.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium thermocellum JW20] gi|125715723|gb|ABN54215.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Clostridium thermocellum ATCC 27405] gi|255991804|gb|EEU01903.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium thermocellum DSM 2360] gi|281406875|gb|EFB37139.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium thermocellum JW20] gi|316939618|gb|ADU73652.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Clostridium thermocellum DSM 1313] Length = 128 Score = 67.0 bits (162), Expect = 8e-10, Method: Composition-based stats. Identities = 32/124 (25%), Positives = 49/124 (39%), Gaps = 15/124 (12%) Query: 15 EFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP 74 F ++ F T+ YP EK P RG + + CI C LC CP Sbjct: 2 SFFTMTKTLIKSIFHGPYTVRYPLEKKEPFPASRGRIEI-----NIQDCIFCGLCARRCP 56 Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF-EFATETRQE 133 AI +E R+ I+ ++CI CG C E CP + + + E ++ Sbjct: 57 TGAINVEKPE---------SRWSINRLRCIQCGYCSEVCPKKCLKMNNMYPAPSFENIED 107 Query: 134 LYYD 137 +Y + Sbjct: 108 VYQN 111 >gi|268680486|ref|YP_003304917.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfurospirillum deleyianum DSM 6946] gi|268618517|gb|ACZ12882.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfurospirillum deleyianum DSM 6946] Length = 179 Score = 67.0 bits (162), Expect = 8e-10, Method: Composition-based stats. Identities = 36/115 (31%), Positives = 51/115 (44%), Gaps = 16/115 (13%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T YPFE + FRG+ A CI C C CP+ AIT++ + Sbjct: 14 ITHKYPFEPYKVAQNFRGKPAYTFD-----LCIGCAACGIACPSNAITVQFNED-----K 63 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGD 146 + ++ D +CI+CG C E CP AI FE A + +DK L+ G+ Sbjct: 64 SKLVWEFDCGRCIFCGRCDEVCPTGAIRLSEEFELAVK------FDKSALIQRGE 112 >gi|309784776|ref|ZP_07679409.1| hydrogenase-4 component H [Shigella dysenteriae 1617] gi|308927146|gb|EFP72620.1| hydrogenase-4 component H [Shigella dysenteriae 1617] Length = 131 Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 43/127 (33%), Gaps = 10/127 (7%) Query: 27 FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC 86 T+ YPF SP FRG+ L A A + Sbjct: 1 MRAGTATVKYPFAPLEVSPGFRGKPDLMPSQCIACG----------ACACACPANALTIQ 50 Query: 87 HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGD 146 D + + + + +CIYCG C+E CP AI NFE + +LY L Sbjct: 51 TDDQQNSRTWQRYLGRCIYCGRCEEVCPTRAIQLTNNFELTVTNKADLYTRATFHLQRCS 110 Query: 147 RWESEIV 153 R E Sbjct: 111 RCERPFA 117 >gi|121534187|ref|ZP_01666012.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus carboxydivorans Nor1] gi|121307290|gb|EAX48207.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus carboxydivorans Nor1] Length = 165 Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 32/117 (27%), Positives = 50/117 (42%), Gaps = 12/117 (10%) Query: 20 FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79 + +R FK +T YPF + RG+ + C+AC++CE +C AI Sbjct: 5 LKIAIRNLFKRPSTDPYPFGETFVPKGLRGKA-----QYNPKACVACRMCEYVCAGGAIQ 59 Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 I + + + + C +CGLC+ CP AI ++ T RQE Y Sbjct: 60 I-----REVADKSGLEFILWHNTCTFCGLCEHYCPTKAIRLTEDY--HTTHRQEDKY 109 >gi|120602014|ref|YP_966414.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfovibrio vulgaris DP4] gi|120562243|gb|ABM27987.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Desulfovibrio vulgaris DP4] Length = 211 Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 42/112 (37%), Gaps = 10/112 (8%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 G + R K +T +PF + T RFRG+ L C+ C +C +C Sbjct: 1 MFGFLKVLARNVLKGPSTDPFPFAEAHTPARFRGQVRL-----DPALCVGCAICHHVCAG 55 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 AI I + + C CGLC+ CP AI ++ A Sbjct: 56 GAINIAEREDGSGYD-----FTVWHNTCALCGLCRHYCPTGAITLSNDWHNA 102 >gi|332701740|ref|ZP_08421828.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfovibrio africanus str. Walvis Bay] gi|332551889|gb|EGJ48933.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfovibrio africanus str. Walvis Bay] Length = 140 Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 47/112 (41%), Gaps = 14/112 (12%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80 L + +T YP RGE N ++CI C C +CP+Q IT+ Sbjct: 6 KTALGNLLRKYSTRMYPHVVREPFKDARGEL-----YNEIDKCIFCMKCSKVCPSQCITV 60 Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 ++ + ++ D C+YCG+C E CPV + P + A R+ Sbjct: 61 DN---------KAATWECDPFACVYCGVCVENCPVSCLHMKPAYRKAVYDRE 103 >gi|46580694|ref|YP_011502.1| hydrogenase subunit CooX [Desulfovibrio vulgaris str. Hildenborough] gi|46450113|gb|AAS96762.1| hydrogenase, CooX subunit, putative [Desulfovibrio vulgaris str. Hildenborough] gi|311234413|gb|ADP87267.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio vulgaris RCH1] Length = 211 Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 29/112 (25%), Positives = 42/112 (37%), Gaps = 10/112 (8%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 G + R K +T +PF + T RFRG+ L C+ C +C +C Sbjct: 1 MFGFLKVLARNVLKGPSTDPFPFAEAHTPARFRGQVRL-----DPALCVGCAICHHVCAG 55 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 AI I + + C CGLC+ CP AI ++ A Sbjct: 56 GAINIAEREDGSGYD-----FTVWHNTCALCGLCRHYCPTGAITLSNDWHNA 102 >gi|317153005|ref|YP_004121053.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316943256|gb|ADU62307.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 195 Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 63/189 (33%), Gaps = 35/189 (18%) Query: 1 MRIFRCNV--SFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKG--STSPRFRGEHALRRY 56 M R +V + + + +YF + T++YP + + G L Sbjct: 1 MNALRKHVIQPIIDCWSLLVGLKITGKYFCQPLITVHYPRQVIDDENLSTYGGHVELIGM 60 Query: 57 PNGE--ERCIACKLCEAICPAQAITIESGPRC----------------------HDGTRR 92 P +CI+C +C CP+ + + G + Sbjct: 61 PKDPATPKCISCMMCVTNCPSNCLKVVKSKPPVTTPEQEQAWKEAEERGEKVTRPKGPKY 120 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEI 152 ++ D C CG C + CP + + N + +R+E++ D LL E Sbjct: 121 PAKFMYDYTLCSLCGTCIDNCPANTLRFSNNIYWVATSRKEMHID---LLARL----REK 173 Query: 153 VRNIVTDSP 161 ++ +P Sbjct: 174 ATDLSAPAP 182 >gi|225164839|ref|ZP_03727063.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutaceae bacterium TAV2] gi|224800549|gb|EEG18921.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutaceae bacterium TAV2] Length = 294 Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 45/113 (39%), Gaps = 7/113 (6%) Query: 29 KAKTTINYPFEKGS-TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI-ESGPRC 86 + T+ YP R G + +C C C CP AIT + Sbjct: 13 RGCATMAYPDGPAPALPDRHGGALRI-----DPTKCNGCADCAPACPTGAITYSNTNDTG 67 Query: 87 HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139 + +R +D+ +C++C C EACP AIV+ + AT R +L + Sbjct: 68 NRTGQRARLATLDLGRCLFCNECIEACPDGAIVQTGDHRMATRQRDDLILAPD 120 >gi|149194387|ref|ZP_01871484.1| NADH dehydrogenase subunit I [Caminibacter mediatlanticus TB-2] gi|149135562|gb|EDM24041.1| NADH dehydrogenase subunit I [Caminibacter mediatlanticus TB-2] Length = 190 Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 32/101 (31%), Positives = 40/101 (39%), Gaps = 10/101 (9%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSP-RFRGEHALRRYPNGEERCIACKLCEAICP 74 + F + F+ TI YPFE R+RG E CI C CE +CP Sbjct: 1 MIKMFIESFKNMFQKPDTIKYPFEPSPPPKGRYRGTIL-----YEESLCIFCDKCENVCP 55 Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 AI E D Y+ + CIYCG C + CP Sbjct: 56 PGAILFE----IVDYETNKREYNYNPYLCIYCGACVDECPK 92 >gi|237729675|ref|ZP_04560156.1| formate hydrogenlyase complex iron-sulfur subunit [Citrobacter sp. 30_2] gi|226908281|gb|EEH94199.1| formate hydrogenlyase complex iron-sulfur subunit [Citrobacter sp. 30_2] Length = 180 Score = 66.7 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 10/103 (9%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 T +YP E + FRG+ + ++CI C C CP+ A+T+E+ + Sbjct: 15 TSSYPLEPIAVDKNFRGKPE-----HNPQQCIGCAACVNACPSNALTVETDLVTN----- 64 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 + + ++ +CI+C C+E CP AI +E A + + Sbjct: 65 ELAWQFNLGRCIFCARCEEVCPTAAIKLSQEYELAVWKKDDFL 107 >gi|118581191|ref|YP_902441.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Pelobacter propionicus DSM 2379] gi|118581199|ref|YP_902449.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Pelobacter propionicus DSM 2379] gi|118503901|gb|ABL00384.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pelobacter propionicus DSM 2379] gi|118503909|gb|ABL00392.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pelobacter propionicus DSM 2379] Length = 175 Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 30/120 (25%), Positives = 39/120 (32%), Gaps = 11/120 (9%) Query: 15 EFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP 74 + + T+ YPFE RFRG +CI C C Sbjct: 2 SILSKLKETAICLNAGRVTMPYPFESKPVPERFRGRPI-----WDHVKCIGCAGCAN--- 53 Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134 + E R + Y +C YCG C + CP DAI FE T +L Sbjct: 54 -NCPSREILINDICQEIRILHY--LGRRCTYCGRCADVCPEDAITMSHEFENGTNKITDL 110 >gi|118474452|ref|YP_891336.1| formate hydrogenlyase complex iron-sulfur subunit [Campylobacter fetus subsp. fetus 82-40] gi|261885852|ref|ZP_06009891.1| formate hydrogenlyase complex iron-sulfur subunit [Campylobacter fetus subsp. venerealis str. Azul-94] gi|118413678|gb|ABK82098.1| hydrogenase-4 component H [Campylobacter fetus subsp. fetus 82-40] Length = 176 Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 30/115 (26%), Positives = 50/115 (43%), Gaps = 16/115 (13%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T YP+E FRG+ CI C C CP+ AI+++ + Sbjct: 13 VTSKYPYEPYIVEEHFRGKP-----TYHYTNCIGCAACGVACPSNAISVKWED-----GK 62 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGD 146 + +++ + +CI+CG C E CP AI ++E + +DK L+ G+ Sbjct: 63 KFIKWRYNCGRCIFCGRCDEVCPTAAIRLSNDYELTVK------FDKSALIQEGE 111 >gi|220904047|ref|YP_002479359.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868346|gb|ACL48681.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 254 Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 30/118 (25%), Positives = 47/118 (39%), Gaps = 12/118 (10%) Query: 19 AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78 + + T++YP ++ + SPR+ G +L C C+ C A CP A+ Sbjct: 1 MLRIIKERIHQKYRTLDYPHQQPTLSPRYMGRPSLI-----PVDCGDCRACYAACPTAAL 55 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 G +DM +C +CG C+ ACP AI A R++L Sbjct: 56 LPTEGVPGSTP-------TLDMGRCTFCGACRAACPKQAITFTGEHRMAAFRREDLLI 106 >gi|124485782|ref|YP_001030398.1| NADH-plastoquinone oxidoreductase subunit [Methanocorpusculum labreanum Z] gi|124363323|gb|ABN07131.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Methanocorpusculum labreanum Z] Length = 146 Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 33/138 (23%), Positives = 42/138 (30%), Gaps = 22/138 (15%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGS-----------------TSPRFRGEHALRRYPN 58 L K T +P + P + Sbjct: 1 MFPMLKEILAQSVKKPVTNLFPAARLPKTITGFLGQVGEGKAALIPPVETPSAMRGKLLY 60 Query: 59 GEERCIACKLCEAICPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 C C LC +CPA AI D R R I + CI+CG C + C Sbjct: 61 DRNLCNGCGLCMKVCPAHAIEQVVYPVPPAKDAEDKPRAQKRVRIYVGNCIFCGQCIDIC 120 Query: 114 PVDAIVEGPNFEFATETR 131 P AI + P+F ATE R Sbjct: 121 PKGAISQSPDFLLATEDR 138 >gi|225629759|ref|ZP_03787707.1| NADH dehydrogenase I, I subunit [Wolbachia endosymbiont of Muscidifurax uniraptor] gi|225591388|gb|EEH12480.1| NADH dehydrogenase I, I subunit [Wolbachia endosymbiont of Muscidifurax uniraptor] Length = 75 Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 37/65 (56%), Positives = 44/65 (67%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER 62 + + + E + F + L+Y FK K T+ YP EKG SPRFRGEHALRRYPNGEER Sbjct: 10 MLKKLAWYWSFVELIKGFVITLKYMFKPKVTLRYPMEKGPLSPRFRGEHALRRYPNGEER 69 Query: 63 CIACK 67 CIACK Sbjct: 70 CIACK 74 >gi|289578798|ref|YP_003477425.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermoanaerobacter italicus Ab9] gi|297545019|ref|YP_003677321.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528511|gb|ADD02863.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermoanaerobacter italicus Ab9] gi|296842794|gb|ADH61310.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 123 Score = 66.3 bits (160), Expect = 1e-09, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 48/124 (38%), Gaps = 14/124 (11%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + L T YPFEK R RG N ++CI C +C+ +CP+ Sbjct: 1 MLDMLKNVLSNLIHKPVTRKYPFEKREPFERARGHI-----KNDIDKCILCGICQRVCPS 55 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 I R+ ++ +C+ CG C E CP ++ + + + E+ Sbjct: 56 NCI---------QVNRKEGKWVFQPFECVICGACVENCPTKSLKMEAEYRAVSNEKYEIV 106 Query: 136 YDKE 139 + KE Sbjct: 107 HKKE 110 >gi|218888274|ref|YP_002437595.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218759228|gb|ACL10127.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 229 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 10/112 (8%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +G + R + +T +PF + T RFRG+ + +C+ C +C +C Sbjct: 1 MLGFLKILARNVAQGPSTDPFPFAETHTPSRFRGKVTM-----DPAKCVGCAICRHVCAG 55 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 AI IE + + C CGLC+ CP AI ++ A Sbjct: 56 GAIRIEPREDRSGYD-----FTVWHNTCALCGLCRHYCPTGAITMTNDWHNA 102 >gi|148262959|ref|YP_001229665.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Geobacter uraniireducens Rf4] gi|146396459|gb|ABQ25092.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Geobacter uraniireducens Rf4] Length = 263 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 36/119 (30%), Positives = 47/119 (39%), Gaps = 7/119 (5%) Query: 19 AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78 F L + TI YP E FRG L C+LC CP AI Sbjct: 1 MFKAILARIHQKHRTIKYPAEPAVLPELFRGYPLLNPDACPSG----CRLCADACPFGAI 56 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 T +G GT + + D+ KC++C C EACP AI + + A R +L Sbjct: 57 TTGNGE-LETGTGKNLSLDM--GKCLFCPECAEACPHGAISFSCDEKLAATHRADLIVT 112 >gi|167951303|ref|ZP_02538377.1| NADH dehydrogenase subunit I [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 49 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 16/47 (34%), Positives = 29/47 (61%) Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 AIVE +E+ E R++ K++LL GD++E+++ +I + YR Sbjct: 3 AIVETRIYEYHFENREDAVMTKQKLLALGDKYEAQLAADIEAQARYR 49 >gi|220930726|ref|YP_002507635.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium cellulolyticum H10] gi|220001054|gb|ACL77655.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium cellulolyticum H10] Length = 124 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 44/118 (37%), Gaps = 13/118 (11%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + T YPFEK RG+ E+CI C +C+ CPA Sbjct: 1 MFKMMENIFKNLTSKPATRMYPFEKREPFKDSRGQIE----GIEIEKCIFCSICQRKCPA 56 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 AI + + ++I+ KC+ C +C E CP IV + A ++ Sbjct: 57 NAIVVNKAEKS---------WEINQFKCVICNVCVEVCPKKCIVASSEHKTAQAKKEN 105 >gi|289805382|ref|ZP_06536011.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 79 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 22/40 (55%), Positives = 27/40 (67%) Query: 106 CGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNG 145 CGLC+EACP AI P+FE RQ+L Y+KE LL +G Sbjct: 1 CGLCEEACPTTAIQLTPDFELGEYKRQDLVYEKEDLLISG 40 >gi|289522407|ref|ZP_06439261.1| NAD(P)H-quinone oxidoreductase subunit I (NAD(P)Hdehydrogenase I subunit I) [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504243|gb|EFD25407.1| NAD(P)H-quinone oxidoreductase subunit I (NAD(P)Hdehydrogenase I subunit I) [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 134 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 32/140 (22%), Positives = 52/140 (37%), Gaps = 36/140 (25%) Query: 18 GAFFLCLRYFFKAKTTINYPFE----------------------KGSTSPRFRGEHALRR 55 F+ ++ FFK T +P T FRG A Sbjct: 4 KMLFINIKQFFKKPFTNLFPLAHIPDHLLAVLKRVKSGEAKLNPPVPTPEGFRGRIA--- 60 Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 +++CI C+LC +CPA AI+ + + + + + +C +C C E CPV Sbjct: 61 --YDKDKCIGCRLCVRVCPANAISYITEEK---------KIMVHVDRCCFCAQCTEICPV 109 Query: 116 DAIVEGPNFEFATETRQELY 135 + F A+ R+E Sbjct: 110 QCLSMSNEFLLASYNRKEQV 129 >gi|224372679|ref|YP_002607051.1| NADH-ubiquinone oxidoreductase 23 kda subunit [Nautilia profundicola AmH] gi|223589224|gb|ACM92960.1| NADH-ubiquinone oxidoreductase 23 kda subunit [Nautilia profundicola AmH] Length = 168 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 32/100 (32%), Positives = 39/100 (39%), Gaps = 9/100 (9%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + F L+ TI YPF +RG EE CI C CE ICP Sbjct: 1 MIQMFIESLKNLVSKPETIKYPFAPSPEPKGYRGTIL-----YNEELCIFCDKCENICPP 55 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 AI E +Y+ + CIYCG C +ACP Sbjct: 56 GAIKFEVVDIESGK----KQYNYNPYLCIYCGACVDACPK 91 >gi|157148258|ref|YP_001455577.1| formate hydrogenlyase complex iron-sulfur subunit [Citrobacter koseri ATCC BAA-895] gi|157085463|gb|ABV15141.1| hypothetical protein CKO_04075 [Citrobacter koseri ATCC BAA-895] Length = 180 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 30/128 (23%), Positives = 50/128 (39%), Gaps = 10/128 (7%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 T +YP E + FRG+ + ++CI C C CP+ A+T+E+ Sbjct: 15 TSSYPLEPIAVDKNFRGKPE-----HNPQQCIGCAACVNACPSNALTVETCLVTG----- 64 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEI 152 + + ++ +CI+C C+E CP AI +E A + + L N Sbjct: 65 ELAWQFNLGRCIFCARCEEVCPTAAIKLSQEYELAVWKKADFLQQSRFTLCNCRVCNRPF 124 Query: 153 VRNIVTDS 160 D Sbjct: 125 AVQKEIDY 132 >gi|78221590|ref|YP_383337.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Geobacter metallireducens GS-15] gi|78192845|gb|ABB30612.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Geobacter metallireducens GS-15] Length = 262 Score = 65.9 bits (159), Expect = 2e-09, Method: Composition-based stats. Identities = 35/117 (29%), Positives = 44/117 (37%), Gaps = 13/117 (11%) Query: 24 LRYFFKAKT----TINYPFEKGSTSPRFRGEHALRRYPNGEERCIA-CKLCEAICPAQAI 78 L+ F + TI YP FRG L E C C C CP AI Sbjct: 2 LKALFARRHQGHRTIAYPAGPAQLPELFRGAPFL-----DPEMCPGGCADCANACPHGAI 56 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 T +G G +DM KC++C C ACP AI + A R++L Sbjct: 57 TAGTG---DQGPGTGKTLALDMGKCLFCPECAGACPHGAISFTGDHRLAVNRREDLI 110 >gi|154174847|ref|YP_001407624.1| formate hydrogenlyase complex iron-sulfur subunit [Campylobacter curvus 525.92] gi|112802292|gb|EAT99636.1| hydrogenase-4 component H [Campylobacter curvus 525.92] Length = 179 Score = 65.5 bits (158), Expect = 2e-09, Method: Composition-based stats. Identities = 37/131 (28%), Positives = 55/131 (41%), Gaps = 19/131 (14%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + F + +Y K T YPFE FRG+ E CI C C CP+ Sbjct: 1 MMKLFDITEKY---GKATYAYPFEPYIVPENFRGQP-----NYTYELCIGCAACGIACPS 52 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 AI ++ + ++ D +CI+CG C E CP A+ +FE A + Sbjct: 53 NAIELKMNETQDR-----LVWEFDCGRCIFCGRCDEVCPTGAVRLSDSFELAVK------ 101 Query: 136 YDKERLLNNGD 146 +DK L+ G+ Sbjct: 102 FDKSALIQRGE 112 >gi|213859376|ref|ZP_03385080.1| NADH dehydrogenase subunit I [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 100 Score = 65.5 bits (158), Expect = 3e-09, Method: Composition-based stats. Identities = 34/101 (33%), Positives = 48/101 (47%), Gaps = 8/101 (7%) Query: 11 LFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 + LKE + F +R + F + T YP E PR+RG L R P+GEERC Sbjct: 1 MTLKELLVGFGTQVRSIWMIGLHAFAKRETRMYPEEPVYLPPRYRGRIVLTRDPDGEERC 60 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 +AC LC CP I+++ DG + I+ +CI Sbjct: 61 VACNLCAVACPVGCISLQKAE-TKDGRWYPEFFRINFSRCI 100 >gi|83592759|ref|YP_426511.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodospirillum rubrum ATCC 11170] gi|1515469|gb|AAC45119.1| CooX [Rhodospirillum rubrum] gi|83575673|gb|ABC22224.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodospirillum rubrum ATCC 11170] Length = 166 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 43/108 (39%), Gaps = 12/108 (11%) Query: 20 FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79 + ++ K +T P T +RG+ E C+ CK+CE +CP AI Sbjct: 4 LSILMKNLLKGPSTEPLPTADSPTPAAYRGKVTF-----DETACVGCKMCEHVCPGGAIR 58 Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 E P +R+ I C+ CGLC C AI ++ + Sbjct: 59 FEERPEG-------LRFMIWHNTCVNCGLCSHYCLTKAIKLSNDWHLS 99 >gi|323698259|ref|ZP_08110171.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio sp. ND132] gi|323458191|gb|EGB14056.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio desulfuricans ND132] Length = 195 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 57/165 (34%), Gaps = 28/165 (16%) Query: 1 MRIFRCNV--SFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKG--STSPRFRGEHALRRY 56 M F+ NV L + + +YF + T++YP E + G L Sbjct: 1 MGKFKENVIQPILDCWSLIVGLKITGKYFCQPLVTVHYPREVIDDENLRTYGGHVELIGK 60 Query: 57 PNGE--ERCIACKLCEAICPAQAITIESGP----------------------RCHDGTRR 92 P +CI+C +C CP++ +T+ + Sbjct: 61 PKDPATPKCISCMMCVTNCPSKCLTVVKSKPPKLTAEEEAAMKAAEEAGEKVNKPKAPKN 120 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 ++ D C CG C E CP ++ + + +R+E+ D Sbjct: 121 PAKFIYDYTLCSLCGTCIENCPAKSLRFSNDIYWVATSRKEMKLD 165 >gi|297616849|ref|YP_003702008.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Syntrophothermus lipocalidus DSM 12680] gi|297144686|gb|ADI01443.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Syntrophothermus lipocalidus DSM 12680] Length = 120 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 41/120 (34%), Gaps = 15/120 (12%) Query: 19 AFFL-CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA 77 + + F T YP++ RG L ++CI C CE CPA A Sbjct: 3 GMLIQVFKNLFSRPATRGYPYQPREPFRAARGTLML-----DIDKCIVCGACEKACPAGA 57 Query: 78 ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 I ++ Y D CI CG C EACP + + + ++ Sbjct: 58 IEVKPKEHL---------YKYDPYSCIVCGNCVEACPTGCFEITSEWRKPVTEMRTMVWE 108 >gi|15898912|ref|NP_343517.1| pyruvate synthase delta chain (Pyruvic-ferredoxin oxidoreductase delta chain) (porD-like) [Sulfolobus solfataricus P2] gi|284173031|ref|ZP_06387000.1| pyruvate synthase delta chain (Pyruvic-ferredoxin oxidoreductase delta chain) (porD-like) protein [Sulfolobus solfataricus 98/2] gi|1707734|emb|CAA69454.1| orf c01004 [Sulfolobus solfataricus P2] gi|13815423|gb|AAK42307.1| Pyruvate synthase delta chain (Pyruvic-ferredoxin oxidoreductase delta chain) (porD-like) [Sulfolobus solfataricus P2] gi|261603331|gb|ACX92934.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Sulfolobus solfataricus 98/2] Length = 363 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 45/138 (32%), Gaps = 14/138 (10%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 L + + P K + + RG R + CI CKLC CP + Sbjct: 230 LTWQEMLEGTVIPAVPRGKRNELFK-RGTTKFERPTVDFDTCIKCKLCWVYCPDECFDET 288 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DAIVEGPNFEFATETRQELYYDKER 140 YDI C+ CG+C E CPV D IV F R + +++ Sbjct: 289 PDG----------YYDIAYDYCVGCGICAEVCPVKDCIVMVDESMFTDYRRPYEMWKEDK 338 Query: 141 LLNNGDRWESEIVRNIVT 158 W + + Sbjct: 339 --AKYKEWLKTVRQARKE 354 >gi|323700403|ref|ZP_08112315.1| hypothetical protein DND132_2997 [Desulfovibrio sp. ND132] gi|323460335|gb|EGB16200.1| hypothetical protein DND132_2997 [Desulfovibrio desulfuricans ND132] Length = 166 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 14/104 (13%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80 ++ + T YP+E P +RGE + +CI C C CP+Q IT+ Sbjct: 5 STVIKNLLRKPATRKYPYEVRDPFPNYRGELVI-----DINKCIFCGTCSRKCPSQCITV 59 Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 + + D C+YCG+C+++CP ++ Sbjct: 60 DKDA---------GTWQCDPYACVYCGICRDSCPTKSLSMKDVH 94 >gi|291519866|emb|CBK75087.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Butyrivibrio fibrisolvens 16/4] Length = 134 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 39/102 (38%), Gaps = 14/102 (13%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 ++ F T YPF R RG + + CI C +C CP AIT++ Sbjct: 11 VIKNLFSEPATTQYPFVPREYPERTRGHIDINKD-----SCILCGMCMRSCPPGAITVD- 64 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 R + I+ CI CG C E CP + P + Sbjct: 65 --------RVGKTWSINRFDCIQCGYCAEKCPKKCLSITPGY 98 >gi|16303247|dbj|BAB70482.1| pyruvate:ferredoxin oxidoreductase delta subunit [Sulfolobus solfataricus] Length = 363 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 31/138 (22%), Positives = 45/138 (32%), Gaps = 14/138 (10%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 L + + P K + + RG R + CI CKLC CP + Sbjct: 230 LTWQEMLEGTVIPAVPRGKRNELFK-RGTTKFERPTVDFDTCIECKLCWVYCPDECFDGT 288 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DAIVEGPNFEFATETRQELYYDKER 140 YDI C+ CG+C E CPV D IV F R + +++ Sbjct: 289 PDG----------YYDIAYDYCVGCGICAEVCPVKDCIVMVDESMFTDYRRPYEMWKEDK 338 Query: 141 LLNNGDRWESEIVRNIVT 158 W + + Sbjct: 339 --AKYKEWLKTVRQARKE 354 >gi|296272276|ref|YP_003654907.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Arcobacter nitrofigilis DSM 7299] gi|296096451|gb|ADG92401.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Arcobacter nitrofigilis DSM 7299] Length = 178 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 50/116 (43%), Gaps = 16/116 (13%) Query: 31 KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT 90 K T YP E S FRG+ E CI C C CP+ AI ++ Sbjct: 12 KATYKYPLEPYEVSEGFRGKP-----SYTYENCIGCTACGVACPSNAINVKLNED----- 61 Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGD 146 + + ++ D +CI+CG C E CP AIV FE A + +DK L G+ Sbjct: 62 KTKLVWEFDAARCIFCGRCDEVCPTGAIVLSQEFELAVK------FDKNNLKERGE 111 >gi|256827156|ref|YP_003151115.1| NADH:ubiquinone oxidoreductase chain I-like protein [Cryptobacterium curtum DSM 15641] gi|256583299|gb|ACU94433.1| NADH:ubiquinone oxidoreductase chain I-like protein [Cryptobacterium curtum DSM 15641] Length = 144 Score = 65.1 bits (157), Expect = 3e-09, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 45/104 (43%), Gaps = 14/104 (13%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80 + LR F T+ YP E +G A N + CI C +C+ +CP+ AI + Sbjct: 8 KMTLRSLFTKPETLLYPTEVKPAYLNLKGHIA-----NRIDECILCGMCQRVCPSDAIVV 62 Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 E ++ + ID +C+ C C ACP ++ P + Sbjct: 63 E---------KKNGTWSIDHFRCVQCSACVRACPTSSLSMEPEY 97 >gi|145592473|ref|YP_001154475.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit [Pyrobaculum arsenaticum DSM 13514] gi|145284241|gb|ABP51823.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit [Pyrobaculum arsenaticum DSM 13514] Length = 312 Score = 64.7 bits (156), Expect = 4e-09, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 28/77 (36%), Gaps = 2/77 (2%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--TVRYDIDMIKCIYC 106 G + + +CI C+ C CP AI R R+ D D C C Sbjct: 235 GGWRIDKPVIDHSKCIMCRKCWLYCPDDAIIEAWVEREGPRGRKFRMKMIDFDYQYCKGC 294 Query: 107 GLCQEACPVDAIVEGPN 123 G+C E CP AI Sbjct: 295 GVCAEVCPTGAIQMVRE 311 Score = 35.1 bits (79), Expect = 3.1, Method: Composition-based stats. Identities = 18/46 (39%), Positives = 21/46 (45%) Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 A A+ S G R + ID KCI C C CP DAI+E Sbjct: 221 AGAVFPGSSFPYATGGWRIDKPVIDHSKCIMCRKCWLYCPDDAIIE 266 >gi|229583141|ref|YP_002841540.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Sulfolobus islandicus Y.N.15.51] gi|228013857|gb|ACP49618.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Sulfolobus islandicus Y.N.15.51] Length = 363 Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 49/143 (34%), Gaps = 18/143 (12%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 L + P K + + RG R + CI CKLC CP + Sbjct: 230 LTWHEMLEGTVIPAVPRGKRNELFK-RGTTKFERPTVDFDTCIKCKLCWIYCPDECFDET 288 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DAIVEGPNFEFATETRQELYYDKER 140 YDI C+ CG+C + CPV D IV F R Y+ + Sbjct: 289 PDG----------YYDIAYDYCVGCGICADVCPVKDCIVMVDESMFTDYRRP---YEMWK 335 Query: 141 LLNNGDRWESEIVRNIVTDSPYR 163 N ++ E ++N+ R Sbjct: 336 --ENKAKY-KEWLKNVRQARKER 355 >gi|139439380|ref|ZP_01772821.1| Hypothetical protein COLAER_01840 [Collinsella aerofaciens ATCC 25986] gi|133775159|gb|EBA38979.1| Hypothetical protein COLAER_01840 [Collinsella aerofaciens ATCC 25986] Length = 113 Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 14/100 (14%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80 L K T+ YP EK + R RG N + CI C +C CPA A+ + Sbjct: 8 KTALGSMVKQPVTVCYPQEKLAAPERLRGHIV-----NDMDVCICCGMCARRCPAGALAV 62 Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + R+ + ID C+ CG C E+CP + Sbjct: 63 D---------RKGGTWSIDPYACVVCGECIESCPKHCLTM 93 >gi|306486048|gb|ADM92671.1| NADH-plastoquinone oxidoreductase subunit I [Franklinia alatamaha] Length = 113 Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 5/96 (5%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQSFIITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 ++ +R + Y ID CI+CG C E Sbjct: 77 DLPVVDWKLETDIRKKRLLNYSIDFGICIFCGNCVE 112 >gi|239905427|ref|YP_002952166.1| putative hydrogenase-4 component I [Desulfovibrio magneticus RS-1] gi|239795291|dbj|BAH74280.1| putative hydrogenase-4 component I [Desulfovibrio magneticus RS-1] Length = 258 Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 43/118 (36%), Gaps = 15/118 (12%) Query: 19 AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78 + L + K T+ +P SPRFRG L P E C C CP A+ Sbjct: 1 MLNILLERLRQGKRTVAFPAAMPPLSPRFRGLPVLADSPCAEG----CASCAGACPTGAL 56 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 + +D+ +CI CG C E CP + + A+ TR L Sbjct: 57 GADEDG-----------LYLDLGRCILCGTCAELCPGRRVSFSRDHRLASSTRDGLVL 103 >gi|229087783|ref|ZP_04219905.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus Rock3-44] gi|228695542|gb|EEL48405.1| NADH-quinone oxidoreductase, chain I [Bacillus cereus Rock3-44] Length = 77 Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 36/74 (48%) Query: 78 ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 +T + P + YDI+ CI C LC E CP +AIV NFE A TR +L+ + Sbjct: 1 MTGKKHPDPTKKGKIIDTYDINFEICILCDLCTEVCPTEAIVMTNNFELAEYTRDDLFKN 60 Query: 138 KERLLNNGDRWESE 151 + L N + E Sbjct: 61 LQWLDENDENVRKE 74 >gi|227829378|ref|YP_002831157.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Sulfolobus islandicus L.S.2.15] gi|229578177|ref|YP_002836575.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Sulfolobus islandicus Y.G.57.14] gi|284996746|ref|YP_003418513.1| hypothetical protein LD85_0352 [Sulfolobus islandicus L.D.8.5] gi|227455825|gb|ACP34512.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Sulfolobus islandicus L.S.2.15] gi|228008891|gb|ACP44653.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Sulfolobus islandicus Y.G.57.14] gi|284444641|gb|ADB86143.1| hypothetical protein LD85_0352 [Sulfolobus islandicus L.D.8.5] Length = 363 Score = 64.3 bits (155), Expect = 5e-09, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 49/143 (34%), Gaps = 18/143 (12%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 L + P K + + RG R + CI CKLC CP + Sbjct: 230 LTWHEMLEGTVIPAVPRGKRNELFK-RGTTKFERPTVDFDTCIKCKLCWIYCPDECFDET 288 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DAIVEGPNFEFATETRQELYYDKER 140 YDI C+ CG+C + CPV D IV F R Y+ + Sbjct: 289 PDG----------YYDIAYDYCVGCGICADVCPVKDCIVMVDESMFTDYRRP---YEMWK 335 Query: 141 LLNNGDRWESEIVRNIVTDSPYR 163 N ++ E ++N+ R Sbjct: 336 --ENKAKY-KEWLKNVRQARKER 355 >gi|119871838|ref|YP_929845.1| pyruvate ferredoxin oxidoreductase subunit gamma/delta [Pyrobaculum islandicum DSM 4184] gi|119673246|gb|ABL87502.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit [Pyrobaculum islandicum DSM 4184] Length = 312 Score = 64.3 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 28/77 (36%), Gaps = 2/77 (2%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR--RTVRYDIDMIKCIYC 106 G + + +CI C+ C CP AI R RT D D C C Sbjct: 235 GGWRIEKPIIDHSKCIMCRKCWLYCPDDAIIEAWREAPGPRGRVFRTKVIDFDYQYCKGC 294 Query: 107 GLCQEACPVDAIVEGPN 123 G+C E CP AI Sbjct: 295 GICAEVCPTGAIQMVRE 311 >gi|323476480|gb|ADX81718.1| pyruvate ferredoxin, flavodoxin oxidoreductase, delta subunit [Sulfolobus islandicus HVE10/4] Length = 363 Score = 64.3 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 50/143 (34%), Gaps = 18/143 (12%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 L + + P K + + RG R + CI CKLC CP + Sbjct: 230 LTWQEMLEGTVIPAVPRGKRNELFK-RGTTKFERPTVDFDTCIKCKLCWIYCPDECFDET 288 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DAIVEGPNFEFATETRQELYYDKER 140 YDI C+ CG+C + CPV D IV F R Y+ + Sbjct: 289 PDG----------YYDIAYDYCVGCGICADVCPVKDCIVMVDESMFTDYRRP---YEMWK 335 Query: 141 LLNNGDRWESEIVRNIVTDSPYR 163 N ++ E ++N+ R Sbjct: 336 --ENKAKY-KEWLKNVRQARKER 355 >gi|222529079|ref|YP_002572961.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Caldicellulosiruptor bescii DSM 6725] gi|312127859|ref|YP_003992733.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Caldicellulosiruptor hydrothermalis 108] gi|222455926|gb|ACM60188.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Caldicellulosiruptor bescii DSM 6725] gi|311777878|gb|ADQ07364.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Caldicellulosiruptor hydrothermalis 108] Length = 126 Score = 64.3 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 50/125 (40%), Gaps = 15/125 (12%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 G L F T YP EK RG + E+CI C +C+ CP+ Sbjct: 1 MFGMLKNVLDNLFSKPATRLYPKEKRPFFKDTRGSLEI-----EIEKCIFCGICQRKCPS 55 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 AI ++ R + + ++ KC+ C +C E+CP ++ F T ++ Y Sbjct: 56 NAIVVD---------RNSRTWQLNQYKCVLCNVCVESCPKKCLISKEQFNVPTTYKE-FY 105 Query: 136 YDKER 140 K+ Sbjct: 106 IKKQE 110 >gi|323473828|gb|ADX84434.1| pyruvate ferredoxin, flavodoxin oxidoreductase, delta subunit [Sulfolobus islandicus REY15A] Length = 363 Score = 64.0 bits (154), Expect = 6e-09, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 50/143 (34%), Gaps = 18/143 (12%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 L + + P K + + RG R + CI CKLC CP + Sbjct: 230 LTWQEMLEGTVIPAVPRGKRNELFK-RGTTKFERPTVDFDTCIKCKLCWIYCPDECFDET 288 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DAIVEGPNFEFATETRQELYYDKER 140 YDI C+ CG+C + CPV D IV F R Y+ + Sbjct: 289 PDG----------YYDIAYDYCVGCGICADVCPVKDCIVMVDESMFTDYRRP---YEMWK 335 Query: 141 LLNNGDRWESEIVRNIVTDSPYR 163 N ++ E ++N+ R Sbjct: 336 --ENKAKY-KEWLKNVRQARKER 355 >gi|227826744|ref|YP_002828523.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Sulfolobus islandicus M.14.25] gi|229583908|ref|YP_002842409.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Sulfolobus islandicus M.16.27] gi|238618839|ref|YP_002913664.1| pyruvate ferredoxin, flavodoxin oxidoreductase, delta subunit [Sulfolobus islandicus M.16.4] gi|227458539|gb|ACP37225.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Sulfolobus islandicus M.14.25] gi|228018957|gb|ACP54364.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Sulfolobus islandicus M.16.27] gi|238379908|gb|ACR40996.1| pyruvate ferredoxin, flavodoxin oxidoreductase, delta subunit [Sulfolobus islandicus M.16.4] Length = 363 Score = 64.0 bits (154), Expect = 6e-09, Method: Composition-based stats. Identities = 34/143 (23%), Positives = 50/143 (34%), Gaps = 18/143 (12%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 L + + P K + + RG R + CI CKLC CP + Sbjct: 230 LTWQEMLEGTVIPAVPRGKRNELFK-RGTTKFERPTVDFDTCIKCKLCWIYCPDECFDET 288 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DAIVEGPNFEFATETRQELYYDKER 140 YDI C+ CG+C + CPV D IV F R Y+ + Sbjct: 289 PDG----------YYDIAYDYCVGCGICADVCPVKDCIVMVDESMFTDYRRP---YEMWK 335 Query: 141 LLNNGDRWESEIVRNIVTDSPYR 163 N ++ E ++N+ R Sbjct: 336 --ENKAKY-KEWLKNVRQARKER 355 >gi|312134934|ref|YP_004002272.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Caldicellulosiruptor owensensis OL] gi|311774985|gb|ADQ04472.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Caldicellulosiruptor owensensis OL] Length = 126 Score = 64.0 bits (154), Expect = 6e-09, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 50/125 (40%), Gaps = 15/125 (12%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 G L F T YP EK RG + E+CI C +C+ CP+ Sbjct: 1 MFGMLRNVLDNLFSKPATRLYPKEKRPFFKDTRGSLEI-----EIEKCIFCGICQRKCPS 55 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 AI ++ R + + ++ KCI C +C E+CP ++ F T ++ Y Sbjct: 56 NAIVVD---------RNSRTWQLNQYKCILCNVCVESCPKKCLISKEQFNVPTTYKE-FY 105 Query: 136 YDKER 140 K+ Sbjct: 106 IKKQE 110 >gi|146296552|ref|YP_001180323.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410128|gb|ABP67132.1| ech hydrogenase subunit F [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 127 Score = 64.0 bits (154), Expect = 6e-09, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 46/117 (39%), Gaps = 14/117 (11%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 G L F T YP EK RG + +CI C +C+ CPA Sbjct: 1 MFGMLQNVLNNLFSKPATRLYPKEKRPFFKGTRGSLEIEID-----KCIFCGICQRKCPA 55 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 AIT++ R + ++ KC+ C +C E+CP ++ F T ++ Sbjct: 56 NAITVD---------RNAKMWQLNQYKCVLCNVCVESCPKKCLISKEQFNLPTTYKE 103 >gi|302404533|ref|XP_003000104.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Verticillium albo-atrum VaMs.102] gi|261361286|gb|EEY23714.1| NADH-ubiquinone oxidoreductase 23 kDa subunit [Verticillium albo-atrum VaMs.102] Length = 149 Score = 64.0 bits (154), Expect = 6e-09, Method: Composition-based stats. Identities = 26/56 (46%), Positives = 31/56 (55%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYP 57 + L E ++ + FF+ TI YPFEKG SPRFRGEHALRRYP Sbjct: 58 STLDRMGRYFLLTEMFRGMYVLMEQFFRPPYTIFYPFEKGPISPRFRGEHALRRYP 113 >gi|315427007|dbj|BAJ48625.1| hypothetical protein HGMM_F30C12C43 [Candidatus Caldiarchaeum subterraneum] gi|315427014|dbj|BAJ48631.1| hypothetical protein HGMM_F12C01C05 [Candidatus Caldiarchaeum subterraneum] gi|315428095|dbj|BAJ49682.1| hypothetical protein HGMM_F21D07C32 [Candidatus Caldiarchaeum subterraneum] Length = 302 Score = 64.0 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 31/59 (52%) Query: 89 GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDR 147 +++ +D +C++CG C +ACP A+ P E + R+ L+Y ++L G R Sbjct: 226 HNKKSYFPAVDYGRCVFCGFCVDACPFYALEMTPEIELSDTDRRSLFYSPKKLAKPGVR 284 Score = 40.5 bits (93), Expect = 0.072, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 27/77 (35%), Gaps = 20/77 (25%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKG---------------STSPRFRGEHALRRYPNGE 60 V + L++ F TI YP+EK P F+G H L Sbjct: 9 IVKPMIVALKHVFMPTVTIKYPYEKIINTTGENYRYDPKASIAYPGFKGRHILYLD---- 64 Query: 61 ERCIACKLCEAICPAQA 77 +C C LC+ C A Sbjct: 65 -KCTGCSLCDIACQNVA 80 >gi|302872078|ref|YP_003840714.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Caldicellulosiruptor obsidiansis OB47] gi|302574937|gb|ADL42728.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Caldicellulosiruptor obsidiansis OB47] Length = 126 Score = 64.0 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 50/125 (40%), Gaps = 15/125 (12%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 G L F T YP EK RG + E+CI C +C+ CP+ Sbjct: 1 MFGMLRNVLDNLFSKPVTRLYPKEKRPFFKDTRGSLEI-----EIEKCIFCGICQRKCPS 55 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 AI ++ R + + ++ KC+ C +C E+CP ++ F T ++ Y Sbjct: 56 NAIVVD---------RNSRTWQLNQYKCVLCNVCVESCPKKCLISKEQFNVPTTYKE-FY 105 Query: 136 YDKER 140 K+ Sbjct: 106 IKKQE 110 >gi|41033705|emb|CAF18519.1| 2-oxoglutarate synthase, 2-oxoacid-ferredoxin oxidoreductase CD subunit [Thermoproteus tenax] Length = 311 Score = 64.0 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 25/77 (32%), Gaps = 2/77 (2%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAI--TIESGPRCHDGTRRTVRYDIDMIKCIYC 106 G + + +CI C+ C CP A+ R D C C Sbjct: 234 GSWRVEKPIIDHSKCIMCRKCWMFCPDDAVLEVWRETKLPSGRVVRVKAIDFSYEYCKGC 293 Query: 107 GLCQEACPVDAIVEGPN 123 G+C + CP AI Sbjct: 294 GICADVCPTGAIQMVRE 310 >gi|283853523|ref|ZP_06370764.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio sp. FW1012B] gi|283571104|gb|EFC19123.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio sp. FW1012B] Length = 253 Score = 64.0 bits (154), Expect = 7e-09, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 43/119 (36%), Gaps = 17/119 (14%) Query: 19 AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC-IACKLCEAICPAQA 77 + + + T+ +P PRFRG L C C C CP A Sbjct: 1 MLHILAERLRQGRRTVAFPKNVPDLPPRFRGLPVL-----SPGPCATDCASCAGTCPTGA 55 Query: 78 ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 + + +D+ KCI+CG C ACP + + A++TR+ L Sbjct: 56 LGADEAGLF-----------LDLGKCIFCGTCATACPAGRVAFSQDHRLASDTREGLVL 103 >gi|312622665|ref|YP_004024278.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Caldicellulosiruptor kronotskyensis 2002] gi|312203132|gb|ADQ46459.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Caldicellulosiruptor kronotskyensis 2002] Length = 126 Score = 63.6 bits (153), Expect = 8e-09, Method: Composition-based stats. Identities = 31/125 (24%), Positives = 50/125 (40%), Gaps = 15/125 (12%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 G L F T YP EK RG + E+CI C +C+ CP+ Sbjct: 1 MFGMLKNVLDNLFSKPATRLYPKEKRPFFKDTRGSLEI-----EIEKCIFCGICQRKCPS 55 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 AI ++ R + + ++ KC+ C +C E+CP ++ F T ++ Y Sbjct: 56 NAIIVD---------RNSRTWQLNQYKCVLCNVCVESCPKKCLISKEQFNVPTTYKE-FY 105 Query: 136 YDKER 140 K+ Sbjct: 106 IKKQE 110 >gi|20806657|ref|NP_621828.1| formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Thermoanaerobacter tengcongensis MB4] gi|20515106|gb|AAM23432.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Thermoanaerobacter tengcongensis MB4] Length = 123 Score = 63.6 bits (153), Expect = 8e-09, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 43/109 (39%), Gaps = 14/109 (12%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + T YPFEK RG N E+CI C +C+ +CP+ Sbjct: 1 MLSMLKNVVYNLTHKPATRRYPFEKREPFEGTRGHIE-----NDIEKCILCGICQRVCPS 55 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 I ++ R+ + + CI CG C +ACP +++ + Sbjct: 56 NCIQVD---------RKEGTWKFEPFACIVCGACVDACPTKSLIMLKEY 95 >gi|326389236|ref|ZP_08210804.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Thermoanaerobacter ethanolicus JW 200] gi|325994599|gb|EGD53023.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Thermoanaerobacter ethanolicus JW 200] Length = 123 Score = 63.6 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 44/109 (40%), Gaps = 14/109 (12%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + T YPFEK R RG N E+CI C +C+ +CP+ Sbjct: 1 MLDMLKNVVSNLTHKPATRKYPFEKREPFERARGHIE-----NDIEKCILCGICQRVCPS 55 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 I ++ R+ + + CI CG+C +ACP ++ + Sbjct: 56 NCIQVD---------RKEGTWGFEPFACIICGVCVDACPTKSLTMLREY 95 >gi|313683180|ref|YP_004060918.1| NADH-ubiquinone oxidoreductase 23 kda subunit [Sulfuricurvum kujiense DSM 16994] gi|313156040|gb|ADR34718.1| NADH-ubiquinone oxidoreductase 23 kda subunit [Sulfuricurvum kujiense DSM 16994] Length = 143 Score = 63.6 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 34/101 (33%), Gaps = 11/101 (10%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + FK T YP E +RG G + CI C CE +CP Sbjct: 1 MFRSMLEAFKNLFKPVRTHPYPAEDIVLPSGYRGLIE-----YGIDACIFCDKCEKVCPP 55 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 AI Y + CIYCG C ACP Sbjct: 56 GAILFYQHESGE------KEYRYNPWLCIYCGECVRACPKP 90 >gi|171186242|ref|YP_001795161.1| pyruvate ferredoxin oxidoreductase subunit gamma/delta [Thermoproteus neutrophilus V24Sta] gi|170935454|gb|ACB40715.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit [Thermoproteus neutrophilus V24Sta] Length = 312 Score = 63.6 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 28/77 (36%), Gaps = 2/77 (2%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR--RTVRYDIDMIKCIYC 106 G + + +CI C+ C CP AI R RT D D C C Sbjct: 235 GGWRIEKPIIDHSKCIMCRKCWLYCPDDAIIEAWREAPGPRGRVFRTKAIDFDYQYCKGC 294 Query: 107 GLCQEACPVDAIVEGPN 123 G+C E CP AI Sbjct: 295 GVCAEVCPTGAIQMVRE 311 >gi|157164904|ref|YP_001466172.1| formate hydrogenlyase complex iron-sulfur subunit [Campylobacter concisus 13826] gi|112801504|gb|EAT98848.1| hydrogenase-4 component H [Campylobacter concisus 13826] Length = 179 Score = 63.6 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 35/131 (26%), Positives = 54/131 (41%), Gaps = 19/131 (14%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + F + +Y K T YPFE FRG+ + C+ C C CP+ Sbjct: 1 MMKLFDITEKY---GKATYAYPFEPYIVPENFRGQP-----DYTYDLCVGCAACGIACPS 52 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 AI ++ + + D +CI+CG C E CP A+ +FE A + Sbjct: 53 NAIELKMNDEQTR-----LVWQFDCGRCIFCGRCDEVCPTGAVRLSDSFELAVK------ 101 Query: 136 YDKERLLNNGD 146 +DK L+ G+ Sbjct: 102 FDKSALIQRGE 112 >gi|242280699|ref|YP_002992828.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio salexigens DSM 2638] gi|242123593|gb|ACS81289.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio salexigens DSM 2638] Length = 124 Score = 63.6 bits (153), Expect = 9e-09, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 48/111 (43%), Gaps = 10/111 (9%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 L+ + +T YP EK R+RGE N + CI CK C+ CP+Q IT+ Sbjct: 7 TVLKNLLQKSSTRMYPIEKREPFERYRGEL-----FNNIDECIFCKKCQIKCPSQCITVT 61 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 GT + C+YC +C + CP +++ P + R+ Sbjct: 62 KDKDSGTGTWICDPF-----ACVYCSICVDHCPTNSLYMKPVHRAPSAERE 107 >gi|83591658|ref|YP_425410.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodospirillum rubrum ATCC 11170] gi|83574572|gb|ABC21123.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodospirillum rubrum ATCC 11170] Length = 175 Score = 63.6 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 12/104 (11%) Query: 31 KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT 90 + T+ YPF PRFRG + +CI C C +CP + I + Sbjct: 16 RVTLPYPFVPLKAPPRFRGRPTI-----DGAKCIGCGACAEVCPPRLIEVNDAAST---- 66 Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134 +++ +C YC CQE CP A+ +FE AT R+ L Sbjct: 67 ---RTVELNYSRCTYCARCQEICPTGAMTCTEDFEMATADRKNL 107 >gi|257460516|ref|ZP_05625617.1| hydrolase, carbon-nitrogen family [Campylobacter gracilis RM3268] gi|257441847|gb|EEV16989.1| hydrolase, carbon-nitrogen family [Campylobacter gracilis RM3268] Length = 179 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 38/131 (29%), Positives = 57/131 (43%), Gaps = 19/131 (14%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + F + +Y K T YPFE FRG+ E CI C C CP+ Sbjct: 1 MMKLFDITEKY---GKATYAYPFEPYIVPENFRGQPEYTY-----ELCIGCAACGIACPS 52 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 AI ++ + ++ D +CI+CG C E CP A+ G +FE A + Sbjct: 53 NAIELKMNEAQTK-----LIWEFDCGRCIFCGRCDEVCPTGAVRLGNSFELAVK------ 101 Query: 136 YDKERLLNNGD 146 +DK L+ +G+ Sbjct: 102 FDKSALIQHGE 112 >gi|327310891|ref|YP_004337788.1| 2-oxoglutarate synthase, 2-oxoacid-ferredoxin oxidoreductase CD subunit [Thermoproteus uzoniensis 768-20] gi|326947370|gb|AEA12476.1| 2-oxoglutarate synthase, 2-oxoacid-ferredoxin oxidoreductase CD subunit [Thermoproteus uzoniensis 768-20] Length = 314 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 27/77 (35%), Gaps = 2/77 (2%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR--RTVRYDIDMIKCIYC 106 G + R +CI C+ C CP A+ R + D D C C Sbjct: 237 GSWRVERPVIDHSKCIMCRRCWIYCPDDAVLEVWREAKGPRGRSVKVKSIDFDYNYCKGC 296 Query: 107 GLCQEACPVDAIVEGPN 123 G+C E CP AI Sbjct: 297 GICAEVCPTGAIKMVRE 313 >gi|256830388|ref|YP_003159116.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfomicrobium baculatum DSM 4028] gi|256579564|gb|ACU90700.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfomicrobium baculatum DSM 4028] Length = 263 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 32/119 (26%), Positives = 46/119 (38%), Gaps = 17/119 (14%) Query: 20 FFLCLRYFFKAKTTINYPFEKGS-TSPRFRGEHALRRYPNGEERCIA-CKLCEAICPAQA 77 F + + T+ YP R G L C C C+ +CP A Sbjct: 4 FDTLMNRMRRGCQTMPYPKGPAPALPDRHGGALRL-----DASLCPEGCAQCQGVCPTGA 58 Query: 78 ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 IT+E G R +D+ +C++CG C ACP AI + AT R++L Sbjct: 59 ITLEPGRRA----------RLDLGRCLFCGDCVAACPHGAITTTNDHRLATRRREDLIL 107 >gi|325290168|ref|YP_004266349.1| hypothetical protein Sgly_2055 [Syntrophobotulus glycolicus DSM 8271] gi|324965569|gb|ADY56348.1| hypothetical protein Sgly_2055 [Syntrophobotulus glycolicus DSM 8271] Length = 120 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 14/104 (13%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80 +R F T YP K PR RG L CI C +C+ CPA AI++ Sbjct: 8 KTVMRSLFGKPATAMYPIIKNEFYPRTRGRIEL-----NVADCIFCGMCDKRCPADAISV 62 Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 +R R++ID +CI C C E CP + + G + Sbjct: 63 ---------SRPDKRWEIDRTRCIVCNFCVEVCPKNCLNTGKQY 97 >gi|303327571|ref|ZP_07358012.1| putative Ech hydrogenase, subunit EchF [Desulfovibrio sp. 3_1_syn3] gi|302862511|gb|EFL85444.1| putative Ech hydrogenase, subunit EchF [Desulfovibrio sp. 3_1_syn3] Length = 139 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 42/108 (38%), Gaps = 14/108 (12%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + LR T YP E+ P +RG N + CI C C +CP Sbjct: 1 MYMLKNVLRNLSGKPATRLYPLEEREPFPAYRGVI-----HNDVQACIFCSTCARVCPTG 55 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 AIT+++ + R++ D C+YC C E CP + + Sbjct: 56 AITVDA---------KAGRWEYDPFLCVYCSACVEKCPTKCLKQESIH 94 >gi|323706316|ref|ZP_08117882.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323534368|gb|EGB24153.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 118 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 52/125 (41%), Gaps = 14/125 (11%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + K T YPFE+ RG N + CI C +C+ +CP+ Sbjct: 1 MLDMLKNVFSNLSKKPVTRMYPFEERKPFDINRGHLE-----NNIDECIFCGMCQRVCPS 55 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 I+++ R+T ++ + +C+ CG+C E CP + ++ T+ + ++ Sbjct: 56 NCISVD---------RKTSVWEYNPFECVLCGVCVEKCPKKCLKLDVHYRSCTDKKYNIH 106 Query: 136 YDKER 140 +K Sbjct: 107 LEKHD 111 >gi|167042388|gb|ABZ07115.1| putative 4Fe-4S binding domain protein [uncultured marine crenarchaeote HF4000_ANIW97P9] Length = 69 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 28/47 (59%) Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERL 141 ID KC++CGLC +ACP A+ ++E ++ T++ L Y +L Sbjct: 1 MPQIDYGKCVFCGLCVDACPFYALYMTNDYELSSFTKEALIYTPAQL 47 >gi|255322774|ref|ZP_05363916.1| hydrolase, carbon-nitrogen family [Campylobacter showae RM3277] gi|255300116|gb|EET79391.1| hydrolase, carbon-nitrogen family [Campylobacter showae RM3277] Length = 179 Score = 63.2 bits (152), Expect = 1e-08, Method: Composition-based stats. Identities = 35/131 (26%), Positives = 53/131 (40%), Gaps = 19/131 (14%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + F + +Y K T YPFE FRG+ E C+ C C CP+ Sbjct: 1 MMKLFDITEKY---GKATYAYPFEPYKVPENFRGQP-----FYTYELCVGCAACGVACPS 52 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 AI ++ + + + D +CI+CG C E CP + FE A + Sbjct: 53 NAIELKMNEKQDK-----LVWQFDCGRCIFCGRCDEVCPTGGVRLSQGFELAVK------ 101 Query: 136 YDKERLLNNGD 146 +DK L+ G+ Sbjct: 102 FDKSALIQRGE 112 >gi|257064039|ref|YP_003143711.1| NADH:ubiquinone oxidoreductase chain I-like protein [Slackia heliotrinireducens DSM 20476] gi|256791692|gb|ACV22362.1| NADH:ubiquinone oxidoreductase chain I-like protein [Slackia heliotrinireducens DSM 20476] Length = 300 Score = 62.8 bits (151), Expect = 1e-08, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 37/103 (35%), Gaps = 13/103 (12%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80 + +R F T+ YP + RG + + CI C +C CPA AI + Sbjct: 8 KMTMRSLFGTPETVLYPVVEPKRHANTRGHIE----NHAPQDCILCGICMKKCPANAIVV 63 Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 R + ID +CI C C ACP + Sbjct: 64 SKPERT---------WTIDPFRCIRCNECAIACPKQCLSMHME 97 >gi|322419369|ref|YP_004198592.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein [Geobacter sp. M18] gi|320125756|gb|ADW13316.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp. M18] Length = 125 Score = 62.8 bits (151), Expect = 1e-08, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 48/113 (42%), Gaps = 14/113 (12%) Query: 19 AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78 L+ F T YPF+K +GE L ++C C +C+ CP+Q I Sbjct: 3 MLNTLLKNLFTGYATRLYPFKKREPFQDVKGELKL-----DVDKCTFCTVCQIKCPSQCI 57 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 ++ R+ ++ ID C+YCG+C + CP + + A ++ Sbjct: 58 QVD---------RKERQWRIDPFACVYCGICVDVCPTSCLRHEGYYRPAVYSK 101 >gi|210631900|ref|ZP_03297112.1| hypothetical protein COLSTE_01002 [Collinsella stercoris DSM 13279] gi|210159825|gb|EEA90796.1| hypothetical protein COLSTE_01002 [Collinsella stercoris DSM 13279] Length = 157 Score = 62.8 bits (151), Expect = 1e-08, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 41/109 (37%), Gaps = 12/109 (11%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 + LR F T+ YP E+ + + CI C +C+ CP AI ++ Sbjct: 1 MTLRSLFGKPATVQYPAEQVPAMSYEHMRGHVECD---MDTCILCGMCQRACPVGAIAVD 57 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 R+ + ID +CI C C CP + G + AT Sbjct: 58 ---------RKGGTWSIDQYRCIQCASCTRECPKSCLSMGTSCAPATTD 97 >gi|331658362|ref|ZP_08359324.1| NADH-quinone oxidoreductase subunit I [Escherichia coli TA206] gi|331056610|gb|EGI28619.1| NADH-quinone oxidoreductase subunit I [Escherichia coli TA206] Length = 115 Score = 62.8 bits (151), Expect = 1e-08, Method: Composition-based stats. Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 7/83 (8%) Query: 9 SFLFLKEFVGAFFLCLR-------YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 + LKE + F +R + F + T YP E PR+RG L R P+GEE Sbjct: 29 KTMTLKELLVGFGTQVRSIWMIGLHAFAKRETRMYPEEPVYLPPRYRGRIVLTRDPDGEE 88 Query: 62 RCIACKLCEAICPAQAITIESGP 84 RC+AC LC CP I+++ Sbjct: 89 RCVACNLCAVACPVGCISLQKAE 111 >gi|312793274|ref|YP_004026197.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180414|gb|ADQ40584.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 126 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 50/125 (40%), Gaps = 15/125 (12%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 G F T YP EK RG + E+CI C +C+ CP+ Sbjct: 1 MFGMLRNVFDNLFSKPATRLYPKEKRPFFKDTRGSLEI-----EIEKCIFCGICQRKCPS 55 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 AI ++ R + + ++ KC+ C +C E+CP ++ F T T +E Y Sbjct: 56 NAIVVD---------RNSRTWQLNQYKCVLCNVCVESCPKKCLISKEQFNVPT-TYKEFY 105 Query: 136 YDKER 140 K+ Sbjct: 106 IKKQE 110 >gi|220904933|ref|YP_002480245.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869232|gb|ACL49567.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 133 Score = 62.8 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 14/108 (12%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + LR T YP E+ P +RG N E+CI C C +CP Sbjct: 1 MYMLKNVLRNLSGKPATRLYPLEEREPFPAYRGVI-----TNEVEKCIFCNSCARVCPTD 55 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 AIT+++ + + D C+YC C E CP +V+ P Sbjct: 56 AITVDA---------KAGHWHYDPFLCVYCSACVEKCPTKCLVQVPTH 94 >gi|169247668|gb|ACA51667.1| EchF [Thermoanaerobacterium saccharolyticum] Length = 118 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 27/125 (21%), Positives = 51/125 (40%), Gaps = 14/125 (11%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + K T YPFE+ RG N + CI C +C+ +CP+ Sbjct: 1 MLDMLKSVFSNLSKKPVTRMYPFEERKPFDINRGHLE-----NNIDECIFCGMCQRVCPS 55 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 I ++ R+T ++ + +C+ CG+C E CP + ++ T+ + ++ Sbjct: 56 NCIKVD---------RKTGVWEYNPFECVLCGVCVEKCPKKCLKLDVHYRSCTDKKYNIH 106 Query: 136 YDKER 140 +K Sbjct: 107 LEKHD 111 >gi|73748670|ref|YP_307909.1| hydrogenase, EchF subunit [Dehalococcoides sp. CBDB1] gi|147669429|ref|YP_001214247.1| ech hydrogenase subunit F [Dehalococcoides sp. BAV1] gi|289432696|ref|YP_003462569.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dehalococcoides sp. GT] gi|73660386|emb|CAI82993.1| hydrogenase, EchF subunit [Dehalococcoides sp. CBDB1] gi|146270377|gb|ABQ17369.1| ech hydrogenase subunit F [Dehalococcoides sp. BAV1] gi|288946416|gb|ADC74113.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dehalococcoides sp. GT] Length = 114 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 34/104 (32%), Positives = 48/104 (46%), Gaps = 14/104 (13%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80 L+ F A T YP+EK + RG +RC C C +CPA+AIT+ Sbjct: 6 GTVLKNLFSAPATRRYPYEKRESFEGSRGSIV-----WDAKRCDMCSDCARVCPARAITV 60 Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 +S + + D +KCIYCG C E C AI++ P + Sbjct: 61 DSEKH---------QIEYDPLKCIYCGTCTETCLQHAIIQHPLY 95 >gi|88603009|ref|YP_503187.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methanospirillum hungatei JF-1] gi|88188471|gb|ABD41468.1| ech hydrogenase subunit F [Methanospirillum hungatei JF-1] Length = 126 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 43/109 (39%), Gaps = 14/109 (12%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 L+ K TI YP++ +P RG + CI C LC+ CPA AI + Sbjct: 9 TVLKNLVKGPATIRYPYQPAKMTPVTRGHLVINID-----DCIFCGLCKMHCPADAIEVS 63 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 R + ++ +C+ CG C CP D + + T + Sbjct: 64 KPDRT---------WRLNQFQCVICGCCVSYCPKDCLSIEQTYLPPTTS 103 >gi|9367355|emb|CAB97258.1| NADH dehydrogenase 8 subunit [Wallaceina inconstans] gi|9367357|emb|CAB97257.1| NADH gehydrogenase 8 subunit [Wallaceina brevicula] Length = 102 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 40/90 (44%), Positives = 47/90 (52%), Gaps = 1/90 (1%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 TI P E S RG H LR Y G ERCIAC+LCE ICP+ AI + R G R Sbjct: 1 ITIVLPIELTIVSLLVRGNHFLRFYWCGLERCIACRLCEYICPSLAIDVR-VLRSLLGFR 59 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 + + + +CIYCG C CP DAI Sbjct: 60 FSEIFTLSYRRCIYCGFCMHVCPTDAITHS 89 >gi|193479938|gb|ACF17991.1| EchF [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 129 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 14/108 (12%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + LR +T YPFE FRG+ N CI CK C+ CP+Q Sbjct: 1 MYMLSNVLRNIMGKYSTRLYPFETRPAYEGFRGKLV-----NNIHDCIFCKSCQIKCPSQ 55 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 IT++ ++D D C+YC +C +ACP + Sbjct: 56 CITVDPKE---------GKWDCDPFACVYCSVCVDACPTHCLSMENQH 94 >gi|323159340|gb|EFZ45325.1| hydrogenase-4 component H [Escherichia coli E128010] Length = 95 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 15/105 (14%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + +R T+ YPF SP FRG+ L +CIAC C CPA Sbjct: 1 MLKLLKTIMR---AGTATVKYPFAPLEVSPGFRGKPDLM-----PSQCIACGACA--CPA 50 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 A+TI++ + + + + + +CIYCG C+E CP AI Sbjct: 51 NALTIQTDDQQNS-----RTWQLYLRRCIYCGRCEEVCPTRAISL 90 >gi|312877212|ref|ZP_07737181.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Caldicellulosiruptor lactoaceticus 6A] gi|311796021|gb|EFR12381.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Caldicellulosiruptor lactoaceticus 6A] Length = 126 Score = 62.4 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 30/125 (24%), Positives = 49/125 (39%), Gaps = 15/125 (12%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 G L F T YP EK +G + E+CI C +C+ CP+ Sbjct: 1 MFGMLKNVLDNLFSKPATRLYPKEKRPFFKDTKGSLEI-----EIEKCIFCGICQRKCPS 55 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 AI ++ R + ++ KC+ C +C E+CP ++ F T ++ Y Sbjct: 56 NAIVVDRNLRT---------WQLNQYKCVLCNVCVESCPKKCLISKEQFNVPTTYKE-FY 105 Query: 136 YDKER 140 K+ Sbjct: 106 IKKQE 110 >gi|269216333|ref|ZP_06160187.1| formate hydrogenlyase subunit 6 [Slackia exigua ATCC 700122] gi|269130592|gb|EEZ61670.1| formate hydrogenlyase subunit 6 [Slackia exigua ATCC 700122] Length = 180 Score = 62.0 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 30/140 (21%), Positives = 44/140 (31%), Gaps = 10/140 (7%) Query: 19 AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78 + T YP FRG+ C + CP AI Sbjct: 1 MLKTLINALKTGNATTQYPAAPMDLPYGFRGKPEHDEKQCIACA-----ACASACPPNAI 55 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 + + ++I+ +CI+CG C+E CP DAI G FE A ++L Sbjct: 56 QMTVDESAGT-----IAWNINYGRCIFCGRCEEVCPFDAIKLGNEFELAVMAAEDLEESS 110 Query: 139 ERLLNNGDRWESEIVRNIVT 158 LL + Sbjct: 111 TYLLEHCAACGKPFAPRKQV 130 >gi|146303970|ref|YP_001191286.1| pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta [Metallosphaera sedula DSM 5348] gi|145702220|gb|ABP95362.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Metallosphaera sedula DSM 5348] Length = 362 Score = 62.0 bits (149), Expect = 2e-08, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 29/85 (34%), Gaps = 11/85 (12%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 RG R + CI C LC CP YDI C+ CG Sbjct: 254 RGTTKTERPTVDFDACIKCDLCWVYCPDGCFDKTPEG----------YYDIAYDYCVGCG 303 Query: 108 LCQEACPV-DAIVEGPNFEFATETR 131 +C E CPV + IV TR Sbjct: 304 ICAEVCPVKNCIVMVDEKRLPDYTR 328 Score = 33.5 bits (75), Expect = 9.5, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 17/41 (41%) Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + GT +T R +D CI C LC CP + P Sbjct: 249 NEQFKRGTTKTERPTVDFDACIKCDLCWVYCPDGCFDKTPE 289 >gi|218886618|ref|YP_002435939.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757572|gb|ACL08471.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 131 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 30/108 (27%), Positives = 43/108 (39%), Gaps = 14/108 (12%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + LR +T YPFE FRG+ N CI CK C+ CP+Q Sbjct: 1 MYMLSNVLRNIMGKYSTRLYPFETRPAYEGFRGKLV-----NNIHDCIFCKSCQIKCPSQ 55 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 IT++ ++D D C+YC +C +ACP + Sbjct: 56 CITVDPKE---------GKWDCDPFACVYCSVCVDACPTHCLSMENQH 94 >gi|160879878|ref|YP_001558846.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Clostridium phytofermentans ISDg] gi|160428544|gb|ABX42107.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium phytofermentans ISDg] Length = 120 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 42/123 (34%), Gaps = 16/123 (13%) Query: 15 EFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP 74 + F T+ YP + R RG+ + CI C +C+ CP Sbjct: 2 SVFSMTKTLFKNLFHGPYTVLYPIKAKDKFDRTRGKIEISID-----DCIFCSMCQRRCP 56 Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET--RQ 132 A+T++ + I+ CI CG C E CP + + +E R Sbjct: 57 TGALTVDKAK---------SSWSIERFSCIQCGYCTEVCPKKCLHMDNQYTTPSENKIRD 107 Query: 133 ELY 135 E Sbjct: 108 EFV 110 >gi|298289305|gb|ADI75232.1| NADH dehydrogenase subunit 8 [Leishmania amazonensis] Length = 145 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 46/111 (41%), Positives = 58/111 (52%), Gaps = 1/111 (0%) Query: 11 LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70 +F +FV +FF+C F T+ P E S RG H LR Y G ERCIAC+LC+ Sbjct: 1 MFCYDFVFSFFVCFYMCFLCCVTLILPCEITIVSICARGHHFLRFYWCGLERCIACRLCD 60 Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 ICP+ AI + R G R + + I +CIYCG C CP DAI Sbjct: 61 FICPSLAIDVRC-IRSLCGYRYSDLFYISYRRCIYCGFCMHVCPTDAITHS 110 >gi|126460655|ref|YP_001056933.1| pyruvate ferredoxin oxidoreductase subunit gamma/delta [Pyrobaculum calidifontis JCM 11548] gi|126250376|gb|ABO09467.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit [Pyrobaculum calidifontis JCM 11548] Length = 312 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 27/77 (35%), Gaps = 2/77 (2%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--TVRYDIDMIKCIYC 106 G + + +CI C+ C CP AI R+ D D C C Sbjct: 235 GGWRIDKPVIDHSKCIMCRKCWLYCPDDAIIEAWREVEGPRGRKFRMKFIDFDYAFCKGC 294 Query: 107 GLCQEACPVDAIVEGPN 123 G+C E CP AI Sbjct: 295 GVCAEVCPTGAIQMVRE 311 Score = 33.9 bits (76), Expect = 8.4, Method: Composition-based stats. Identities = 17/46 (36%), Positives = 21/46 (45%) Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 A A+ + G R + ID KCI C C CP DAI+E Sbjct: 221 AGAVFPGTSFFYTTGGWRIDKPVIDHSKCIMCRKCWLYCPDDAIIE 266 >gi|320161602|ref|YP_004174827.1| iron-sulfur binding protein [Anaerolinea thermophila UNI-1] gi|319995456|dbj|BAJ64227.1| iron-sulfur binding protein [Anaerolinea thermophila UNI-1] Length = 146 Score = 62.0 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 33/121 (27%), Positives = 48/121 (39%), Gaps = 12/121 (9%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 +R FK T YPFE+ FRG+ E+C C LC CPA AI + Sbjct: 12 VVRSVFKKPATQLYPFERKPAPVAFRGKLV-----WEPEKCAGCMLCVKDCPANAIELIV 66 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP-NFEFATETRQEL--YYDKE 139 + + + +CIYC C +C + +E A+ ++ YY KE Sbjct: 67 LDKVN----KRFVMRYHADRCIYCAQCVVSCRFKCLDLSDEEWELASTGKEPFTVYYGKE 122 Query: 140 R 140 Sbjct: 123 E 123 >gi|303325434|ref|ZP_07355877.1| hydrogenase subunit [Desulfovibrio sp. 3_1_syn3] gi|302863350|gb|EFL86281.1| hydrogenase subunit [Desulfovibrio sp. 3_1_syn3] Length = 271 Score = 61.7 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 46/118 (38%), Gaps = 7/118 (5%) Query: 19 AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA- 77 + + T++YP + + SPR+ G L + C C+ C CPA A Sbjct: 1 MLRIIKERLHQKYRTLDYPRREPALSPRYLGRPTLT-----DVDCGDCRACFTACPAGAL 55 Query: 78 -ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134 + + + +DM +CI+CG C+ ACP A A R+ L Sbjct: 56 LPSPSAASGPPGQSCGARTPLLDMGRCIFCGACRAACPKGAFHFSGEHRLAAFRREAL 113 >gi|120603549|ref|YP_967949.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfovibrio vulgaris DP4] gi|120563778|gb|ABM29522.1| ech hydrogenase subunit F [Desulfovibrio vulgaris DP4] Length = 130 Score = 61.7 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 14/108 (12%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + L+ + T YPF+ FRG N E CI CK C+ CP+Q Sbjct: 1 MYMLSNVLKNLSRKYATRLYPFQTRPAFEGFRGRLV-----NKIEDCIFCKSCQIKCPSQ 55 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 IT++ + +D D C+YC +C +ACP + Sbjct: 56 CITVDP---------KAGTWDCDPFACVYCSVCVDACPTQCLSMVNVH 94 >gi|46578845|ref|YP_009653.1| ech hydrogenase subunit EchF [Desulfovibrio vulgaris str. Hildenborough] gi|46448257|gb|AAS94912.1| Ech hydrogenase, subunit EchF, putative [Desulfovibrio vulgaris str. Hildenborough] gi|311232709|gb|ADP85563.1| Ech hydrogenase subunit EchF [Desulfovibrio vulgaris RCH1] Length = 133 Score = 61.7 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 43/108 (39%), Gaps = 14/108 (12%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + L+ + T YPF+ FRG N E CI CK C+ CP+Q Sbjct: 1 MYMLSNVLKNLSRKYATRLYPFQTRPAFEGFRGRLV-----NKIEDCIFCKSCQIKCPSQ 55 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 IT++ + +D D C+YC +C +ACP + Sbjct: 56 CITVDP---------KAGTWDCDPFACVYCSVCVDACPTQCLSMVNVH 94 >gi|304315650|ref|YP_003850795.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777152|gb|ADL67711.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 118 Score = 61.7 bits (148), Expect = 3e-08, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 50/125 (40%), Gaps = 14/125 (11%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + T YPF + RG N + CI C +C+ +CP+ Sbjct: 1 MLDMLKSVFSNLSRKPVTRMYPFVERKPFDINRGHLE-----NNIDECIFCGMCQRVCPS 55 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 I ++ R+T ++ + +C+ CG+C E CP + ++ T+ + ++ Sbjct: 56 NCIKVD---------RKTSVWEYNPFECVLCGVCVEKCPKKCLKLDVHYRSCTDKKYNIH 106 Query: 136 YDKER 140 +K Sbjct: 107 LEKHD 111 >gi|282856071|ref|ZP_06265357.1| NADH-plastoquinone oxidoreductase subunit [Pyramidobacter piscolens W5455] gi|282586092|gb|EFB91374.1| NADH-plastoquinone oxidoreductase subunit [Pyramidobacter piscolens W5455] Length = 192 Score = 61.7 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 54/157 (34%), Gaps = 35/157 (22%) Query: 16 FVGAFFLC-LRYFFKAKTTINYPFEKGS-----------------TSPRFRGEHALRRYP 57 + A L LR FF T +P + R R Sbjct: 1 MLNAMSLTVLRQFFMRCLTRPFPAMRMPDSMSGALQAAAEGKVALNPAVPRWGRFRGRLN 60 Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 +CI C +C +CPA+AI + + + D +C +C C + CPV A Sbjct: 61 YDRAKCIGCGMCTKVCPARAIVFDPDTEGQKPRKVMLHGD----RCCFCAQCNDVCPVSA 116 Query: 118 IVEGPNFEF-------ATETRQE------LYYDKERL 141 + +F F A TR++ L + KE L Sbjct: 117 LSMTTDFAFSSSGDRKAGTTRKDTGKAVRLPFQKEWL 153 >gi|256380639|ref|YP_003104299.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Actinosynnema mirum DSM 43827] gi|255924942|gb|ACU40453.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Actinosynnema mirum DSM 43827] Length = 173 Score = 61.3 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 31/96 (32%), Positives = 40/96 (41%), Gaps = 13/96 (13%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT--------RRT 93 PR RG AL E C C +C CP I I+S Sbjct: 3 DLPPRTRGVIALL-----EANCTVCMICARECPDWCIHIDSHTEVEQQPGSARPRARNVL 57 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 R+ ID +C+YCG+C EACP DA+ P+F + Sbjct: 58 DRFAIDYGQCLYCGICVEACPFDALHWAPDFSYPGT 93 >gi|206895851|ref|YP_002247250.1| NADH dehydrogenase subunit [Coprothermobacter proteolyticus DSM 5265] gi|206738468|gb|ACI17546.1| NADH dehydrogenase subunit [Coprothermobacter proteolyticus DSM 5265] Length = 183 Score = 61.3 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 32/106 (30%), Positives = 40/106 (37%), Gaps = 14/106 (13%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 E G L +P E P++RG+ E C C+ CE + Sbjct: 3 FGEIFGKLMDTL---VGGPVVKPFPKEPVKVPPKWRGKPL-----YDAEDCTGCRQCERV 54 Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CP AITIE Y ID CIYC C +ACP A+ Sbjct: 55 CPPGAITIEDKKGE------FFHYKIDYGVCIYCWYCIDACPTTAL 94 >gi|197124107|ref|YP_002136058.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Anaeromyxobacter sp. K] gi|196173956|gb|ACG74929.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Anaeromyxobacter sp. K] Length = 256 Score = 61.3 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 39/107 (36%), Gaps = 14/107 (13%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 T+ +P RFRG + C C CP +AI Sbjct: 15 TVAFPDGPPRFPARFRGRPVVDPSRCEAG----CAGCAEACPTEAILDPG---------- 60 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139 T +D+ +C +CG C ACP AI + A TR+ L ++ Sbjct: 61 TATMRVDLGRCTFCGDCATACPPGAIRFTGDHRLAARTREALVVSRD 107 >gi|302389112|ref|YP_003824933.1| NADH dehydrogenase (quinone) [Thermosediminibacter oceani DSM 16646] gi|302199740|gb|ADL07310.1| NADH dehydrogenase (quinone) [Thermosediminibacter oceani DSM 16646] Length = 625 Score = 61.3 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 15/101 (14%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 L+Y F+ + + ++ AL+RY C C C +CP AI+ E Sbjct: 540 TTLKY-FRDEYLAHVREKRCPAGVC----QALKRYAIDATVCKGCSKCSRVCPVGAISGE 594 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + I+ KCI CG C EACP A+ EG Sbjct: 595 IKKP----------FTINPDKCIKCGACVEACPFKAVKEGK 625 >gi|221135174|ref|ZP_03561477.1| electron transport complex, RnfABCDGE type, C subunit [Glaciecola sp. HTCC2999] Length = 529 Score = 61.3 bits (147), Expect = 4e-08, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 37/106 (34%), Gaps = 3/106 (2%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 E CI C LC CPA + + + CI CG C CP Sbjct: 377 EDERPCIRCGLCADACPAG-LLPQQLFWHSKAKEYDKAQAYHLDACIECGACAYVCP-SE 434 Query: 118 IVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 I + A + +KE+ +R+E+ R ++ D R Sbjct: 435 IPLVHYYRKAKTDIKYQAAEKEKSEKARERFETRQAR-LLADKQAR 479 >gi|86160078|ref|YP_466863.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Anaeromyxobacter dehalogenans 2CP-C] gi|85776589|gb|ABC83426.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Anaeromyxobacter dehalogenans 2CP-C] Length = 256 Score = 61.3 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 39/107 (36%), Gaps = 14/107 (13%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 T+ +P RFRG + + C C CP AI Sbjct: 15 TVAFPDGPPRFPARFRGRPVVEPSRCEDG----CAACVEACPTDAILDAGK--------- 61 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139 +D+ +C +CG C ACP A+ + A+ +R+ L ++ Sbjct: 62 -ATMRVDLGRCTFCGDCAAACPSGALRFTGDHRLASRSREALVVSRD 107 >gi|57234353|ref|YP_181594.1| hydrogenase, EchF subunit, putative [Dehalococcoides ethenogenes 195] gi|57224801|gb|AAW39858.1| hydrogenase, EchF subunit, putative [Dehalococcoides ethenogenes 195] Length = 114 Score = 60.9 bits (146), Expect = 5e-08, Method: Composition-based stats. Identities = 32/104 (30%), Positives = 43/104 (41%), Gaps = 14/104 (13%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80 L+ F T YP+EK + RG RC C C +CPA+AIT+ Sbjct: 6 GTVLKNLFSTPPTRRYPYEKRESFAGSRGNI-----TWDAGRCDMCNDCARVCPARAITL 60 Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 + + D +KCIYCG C E C AI + P + Sbjct: 61 KPEKHL---------IEYDPLKCIYCGTCAETCLQHAITQHPLY 95 >gi|257791326|ref|YP_003181932.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Eggerthella lenta DSM 2243] gi|317490463|ref|ZP_07948945.1| 4Fe-4S binding domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325831427|ref|ZP_08164681.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1] gi|257475223|gb|ACV55543.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella lenta DSM 2243] gi|316910456|gb|EFV32083.1| 4Fe-4S binding domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325486681|gb|EGC89129.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1] Length = 118 Score = 60.9 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 14/111 (12%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80 + L FK T+ YP E + +G N +RCI C +C+ CP AI + Sbjct: 8 KMTLGGLFKKPETLMYPVETKTPPAGLKGHVV-----NDVDRCILCGICQKRCPCAAIVV 62 Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 + R + ID +C+ CG C CP D + P + ++ Sbjct: 63 DKPART---------WTIDRFRCVQCGSCVRECPKDCLTMEPTYTPPATSK 104 >gi|307352625|ref|YP_003893676.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307155858|gb|ADN35238.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanoplanus petrolearius DSM 11571] Length = 128 Score = 60.9 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 30/101 (29%), Positives = 39/101 (38%), Gaps = 14/101 (13%) Query: 24 LRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG 83 L+ T+ YPFE RG + CI C LC CPA AI + Sbjct: 13 LKNLVGGPATLRYPFEPAKRYDASRGHIEINID-----DCIFCGLCSKNCPADAIEVSKP 67 Query: 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 R ++ID +CI C C EACP D + + Sbjct: 68 DRT---------WEIDRFRCIICNSCVEACPKDCLSTSNVY 99 >gi|182414283|ref|YP_001819349.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutus terrae PB90-1] gi|177841497|gb|ACB75749.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutus terrae PB90-1] Length = 285 Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 30/154 (19%), Positives = 51/154 (33%), Gaps = 25/154 (16%) Query: 23 CLRY-FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC-IACKLCEAICPAQAITI 80 L + + + T+ +P P G +C C C +CP QAIT+ Sbjct: 6 TLIHRLKRGRETMAFPNGPAPALPDRHGGA----LRVDASKCADGCAACAEVCPTQAITV 61 Query: 81 ESGPRCHDGTRRTV-----------RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 G + +D+ +C++C C + CP AI + + A Sbjct: 62 ADSKVAPPGITDGTPGPRGNASALPKITLDLGRCVFCAECVKTCPAGAITQTGDHRMAVR 121 Query: 130 TRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 R++L G + E+ D R Sbjct: 122 RREDLVL--------GAPGQEEVRLAAALDEKLR 147 >gi|322420679|ref|YP_004199902.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. M18] gi|320127066|gb|ADW14626.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. M18] Length = 252 Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 29/103 (28%), Positives = 40/103 (38%), Gaps = 16/103 (15%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 T+ YP E RFRG L+ + C+LC CP A+ G G Sbjct: 15 TMAYPKEPLPLPERFRGYPELKSSLCPPD----CRLCADACPVGAVGCSEGLSVDLG--- 67 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 KC++C C +ACP I G + A R++L Sbjct: 68 ---------KCLFCAECADACPKGGISYGNDARLAVNRREDLV 101 >gi|124486432|ref|YP_001031048.1| ech hydrogenase subunit F [Methanocorpusculum labreanum Z] gi|124363973|gb|ABN07781.1| ech hydrogenase subunit F [Methanocorpusculum labreanum Z] Length = 124 Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 26/138 (18%), Positives = 48/138 (34%), Gaps = 14/138 (10%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + L+ FF T +P+ RG +C +C +C CP+Q Sbjct: 1 MKMLKTILKQFFDKPATTTFPYTPLENFEGTRGHLVF-----DPSKCTSCMMCMKRCPSQ 55 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 AIT++ + + +D +C+ CG C + C D + + + + Sbjct: 56 AITVQRAEKI---------WTLDRFRCVMCGNCVDVCKFDVLSMEREYAKSATPTERGVE 106 Query: 137 DKERLLNNGDRWESEIVR 154 E +R + E Sbjct: 107 TYEITYVKPERPKKETAE 124 >gi|222054796|ref|YP_002537158.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. FRC-32] gi|221564085|gb|ACM20057.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. FRC-32] Length = 256 Score = 60.5 bits (145), Expect = 8e-08, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 43/117 (36%), Gaps = 15/117 (12%) Query: 19 AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78 L + T+ YP E FRG L + C+LC CP AI Sbjct: 1 MLKTILARIHQKHRTLKYPDEPAQLPELFRGYPVLNAEACPAD----CRLCANACPFGAI 56 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 + +DM KC++C C +CP AI + + A TR++L Sbjct: 57 SRNEN-----------CLALDMGKCLFCPECTLSCPHGAIRFSRDEKLAARTRRDLI 102 >gi|283853890|ref|ZP_06371103.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio sp. FW1012B] gi|283570713|gb|EFC18760.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio sp. FW1012B] Length = 123 Score = 60.1 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 14/104 (13%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 F +T YPF FRG N + CI C+ C+ CP+Q I++++ Sbjct: 11 NLFSKSSTRLYPFAVRGHFEGFRGTLV-----NNIDECIFCRTCQIKCPSQCISVDN--- 62 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 + + + + C+YCG+C + CP + Sbjct: 63 ------KAGTWTCEAMSCVYCGVCVDVCPTSCLSMTKEHRPVAT 100 >gi|255654750|ref|ZP_05400159.1| putative reductase [Clostridium difficile QCD-23m63] gi|296449496|ref|ZP_06891273.1| nitroreductase fused to ferredoxin domain protein [Clostridium difficile NAP08] gi|296878181|ref|ZP_06902196.1| nitroreductase fused to ferredoxin domain protein [Clostridium difficile NAP07] gi|296261560|gb|EFH08378.1| nitroreductase fused to ferredoxin domain protein [Clostridium difficile NAP08] gi|296430934|gb|EFH16766.1| nitroreductase fused to ferredoxin domain protein [Clostridium difficile NAP07] Length = 273 Score = 60.1 bits (144), Expect = 9e-08, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 38/107 (35%), Gaps = 14/107 (13%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 E+C+ C +CE+ C AI ++ CI CG C CP Sbjct: 1 MIDINLEKCVGCGMCESDCLVNAIKVKDDKAKVKNI-----------LCINCGHCMAICP 49 Query: 115 VDAIVEG--PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 DAI E R+ + E+LL N ++ I + + Sbjct: 50 TDAIEMQGFDKNEVVEYNRESFELEPEKLL-NFIKFRRSIRQYKDIE 95 >gi|253699704|ref|YP_003020893.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. M21] gi|251774554|gb|ACT17135.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter sp. M21] Length = 252 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 50/126 (39%), Gaps = 24/126 (19%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 T+ YP E RFRG ++ +E C++C CP A+ + G G Sbjct: 15 TMAYPREPLPLPERFRGYPEIKADLCPKE----CRVCADACPVGALECQPGLSLDLG--- 67 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEI 152 KC++C C ACP AIV P+ A R+EL + GD E + Sbjct: 68 ---------KCLFCPECSRACPNGAIVHTPDARLAANHREELV------VRPGD--ERRL 110 Query: 153 VRNIVT 158 + + Sbjct: 111 AQALEK 116 >gi|118578783|ref|YP_900033.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Pelobacter propionicus DSM 2379] gi|118501493|gb|ABK97975.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Pelobacter propionicus DSM 2379] Length = 252 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 42/122 (34%), Gaps = 16/122 (13%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 T YP PRFRG L C+ C CP AI+ + G Sbjct: 15 TFAYPDAPLPLPPRFRGLPLLDASRCESG----CRACAESCPYGAISADGALSLDMG--- 67 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEI 152 KC++CG C E C AI + A+ +R+ L + E+ Sbjct: 68 ---------KCLFCGQCAEECRQGAISFSNDAALASRSREGLVVRAAEQYQPAEAMGREL 118 Query: 153 VR 154 +R Sbjct: 119 LR 120 >gi|119719979|ref|YP_920474.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Thermofilum pendens Hrk 5] gi|119525099|gb|ABL78471.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermofilum pendens Hrk 5] Length = 233 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 44/105 (41%), Gaps = 9/105 (8%) Query: 20 FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79 ++ + T+ P+ + RG L ++C+ C LC CP+ AIT Sbjct: 11 LKTAVKSLLQPPLTV--PYTGHLNNSFIRGAPLL-----DRDKCLGCSLCARSCPSGAIT 63 Query: 80 IESGPRCHDGTRRTVR--YDIDMIKCIYCGLCQEACPVDAIVEGP 122 + G + G + R + +CIYCG+C E CP AI Sbjct: 64 MVPGGKKVVGGKEVERKIPSFNYYQCIYCGVCAEVCPGRAISMVK 108 >gi|239904917|ref|YP_002951655.1| Ech hydrogenase subunit EchF [Desulfovibrio magneticus RS-1] gi|239794780|dbj|BAH73769.1| Ech hydrogenase subunit EchF [Desulfovibrio magneticus RS-1] Length = 120 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 14/111 (12%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 F +T YPF FRG + CI C+ C CP+Q I +++ Sbjct: 11 NLFSKSSTRLYPFAVRGHFEGFRGTLNINID-----ECIFCRTCMIKCPSQCIAVDN--- 62 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 + + + + C+YCG+C + CP + +Q + Y Sbjct: 63 ------KAGTWTCEAMSCVYCGVCVDVCPTGCLSMSKEHRPVATEKQTMAY 107 >gi|303248160|ref|ZP_07334424.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio fructosovorans JJ] gi|302490424|gb|EFL50333.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio fructosovorans JJ] Length = 121 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 14/107 (13%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 +T YPF FRG N + CI C+ C CP+Q IT+++ Sbjct: 11 NLLTKSSTRLYPFAVRGHFEGFRGTLV-----NNIDECIFCRSCMIKCPSQCITVDN--- 62 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 + + D + C+YCG+C + CP + + + + Sbjct: 63 ------KVGTWTCDAMACVYCGICVDVCPTNCLSMTKEHRPVSTEHE 103 >gi|269215528|ref|ZP_06159382.1| NADH dehydrogenase I, I subunit [Slackia exigua ATCC 700122] gi|269131015|gb|EEZ62090.1| NADH dehydrogenase I, I subunit [Slackia exigua ATCC 700122] Length = 154 Score = 60.1 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 14/101 (13%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80 + +R FK TI YP E RG ++C+ C +C+ +CP +I + Sbjct: 8 KMTIRSLFKKPETIMYPLESPEPYAAMRGHV-----DVEPQKCVLCSICQRVCPTDSIVV 62 Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 + ++ + I+ C+ CG C ACP DA+ Sbjct: 63 D---------KKGASWTINWFSCVICGECVRACPHDALDMH 94 >gi|78355312|ref|YP_386761.1| iron-sulfur cluster-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217717|gb|ABB37066.1| iron-sulfur cluster-binding protein, putative [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 427 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 30/104 (28%), Positives = 43/104 (41%), Gaps = 14/104 (13%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 EERC C C A CP AIT+ + TRR +D C+ CG C CP Sbjct: 284 MAQIQEERCTGCGKCAAACPIDAITMVPAAQTTPDTRRRRSVQVDTSLCLGCGACALKCP 343 Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158 A+V E R++ + E D +E I++++ Sbjct: 344 TGAMVL--------EKRRQRVFHPE------DSFERVILQSLER 373 >gi|298245739|ref|ZP_06969545.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Ktedonobacter racemifer DSM 44963] gi|297553220|gb|EFH87085.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Ktedonobacter racemifer DSM 44963] Length = 601 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 31/111 (27%), Positives = 37/111 (33%), Gaps = 12/111 (10%) Query: 29 KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88 + T P E + R CI C C ICP I++E R Sbjct: 481 RETETGYSPQEAVVQAR--RCLQCQLNIMIDPSICILCSGCVDICPYDCISMEGLSRVVK 538 Query: 89 GTRRTV---------RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 G ID KCI CGLC CP DAI FE ++ Sbjct: 539 GDPMHQGTSTWEGGADMIIDEEKCIRCGLCVVRCPTDAISMV-QFEVSSPN 588 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 25/90 (27%), Gaps = 8/90 (8%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIA------CKLCEAICPAQAITIESGPRCHDGT 90 P E+ RG Y + + I E+ + Sbjct: 443 PAEEIELPDYRRGMV--DNYESIPHQLIPSLPLSERYSHTRETETGYSPQEAVVQARRCL 500 Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + + ID CI C C + CP D I Sbjct: 501 QCQLNIMIDPSICILCSGCVDICPYDCISM 530 >gi|320101037|ref|YP_004176629.1| dihydroorotate dehydrogenase family protein [Desulfurococcus mucosus DSM 2162] gi|319753389|gb|ADV65147.1| dihydroorotate dehydrogenase family protein [Desulfurococcus mucosus DSM 2162] Length = 403 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 31/62 (50%), Gaps = 7/62 (11%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E++CI C CE +C A+ +E G +R R ID+ KC CGLC CP AI Sbjct: 346 DEKKCIGCGFCEQVCNYDAVHVEDA-----GGKRVAR--IDLTKCYGCGLCTSVCPTRAI 398 Query: 119 VE 120 Sbjct: 399 HF 400 >gi|288961343|ref|YP_003451682.1| 4Fe-4S ferredoxin, iron-sulfur binding [Azospirillum sp. B510] gi|288913651|dbj|BAI75138.1| 4Fe-4S ferredoxin, iron-sulfur binding [Azospirillum sp. B510] Length = 176 Score = 59.7 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 38/104 (36%), Gaps = 12/104 (11%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + L + T P + P +RG A + RC AC C +C + Sbjct: 1 MAMLKTILGNLLRPSRT-RAPADMPDVPPAYRGALA-----HEAARCTACGTCAYVCAPK 54 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 AI+ P R + +C +CGLC + CP AI Sbjct: 55 AISFTQDPGLSVSWRFFI------GQCSFCGLCAQNCPTQAIRL 92 >gi|270308172|ref|YP_003330230.1| hydrogenase, EchF subunit [Dehalococcoides sp. VS] gi|270154064|gb|ACZ61902.1| hydrogenase, EchF subunit [Dehalococcoides sp. VS] Length = 114 Score = 59.3 bits (142), Expect = 1e-07, Method: Composition-based stats. Identities = 32/104 (30%), Positives = 43/104 (41%), Gaps = 14/104 (13%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80 L+ F T YP+EK + RG RC C C +CPA AIT+ Sbjct: 6 GTVLKNLFSTPPTRRYPYEKRESFADSRGNI-----TWDAGRCDMCNDCARVCPAHAITL 60 Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 + + D +KCIYCG C E C AI++ P + Sbjct: 61 KPEKHI---------IEYDPLKCIYCGTCTETCLQHAIIQHPLY 95 >gi|255099820|ref|ZP_05328797.1| putative reductase [Clostridium difficile QCD-63q42] Length = 273 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 38/107 (35%), Gaps = 14/107 (13%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 E+C+ C +CE+ C AI ++ CI CG C CP Sbjct: 1 MIDINLEKCVGCGMCESDCLVNAIKVKDDKAKVKNI-----------LCINCGHCMAICP 49 Query: 115 VDAIVEG--PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 DAI E R+ + E+LL N ++ I + + Sbjct: 50 TDAIEMQGFDKNEVIEYNRESFELEPEKLL-NFIKFRRSIRQYKDIE 95 >gi|13541074|ref|NP_110762.1| hypothetical protein TVN0243 [Thermoplasma volcanium GSS1] Length = 984 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 42/122 (34%), Gaps = 9/122 (7%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E Y +CI C C C E+ R V Sbjct: 129 KYPYEPKPYPVDDSNPF----YVYDPNQCILCGRCVEACQ-DVQVNETLSIDWSRERPRV 183 Query: 95 RYD----IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWES 150 +D I+ C+ CG C CPV+A++E A K+++++ E Sbjct: 184 VWDNDVPINESSCVSCGHCVTVCPVNALMEKTMLGKAGFLTGLEKNTKQKMIDVVKSIEP 243 Query: 151 EI 152 EI Sbjct: 244 EI 245 >gi|14324457|dbj|BAB59385.1| formate hydrogenase [Thermoplasma volcanium GSS1] Length = 981 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 42/122 (34%), Gaps = 9/122 (7%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E Y +CI C C C E+ R V Sbjct: 126 KYPYEPKPYPVDDSNPF----YVYDPNQCILCGRCVEACQ-DVQVNETLSIDWSRERPRV 180 Query: 95 RYD----IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWES 150 +D I+ C+ CG C CPV+A++E A K+++++ E Sbjct: 181 VWDNDVPINESSCVSCGHCVTVCPVNALMEKTMLGKAGFLTGLEKNTKQKMIDVVKSIEP 240 Query: 151 EI 152 EI Sbjct: 241 EI 242 >gi|255305705|ref|ZP_05349877.1| putative reductase [Clostridium difficile ATCC 43255] Length = 273 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 38/107 (35%), Gaps = 14/107 (13%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 E+C+ C +CE+ C AI ++ CI CG C CP Sbjct: 1 MIDINLEKCVGCGMCESDCLVNAIKVKDDKAKVKNI-----------LCINCGHCMAICP 49 Query: 115 VDAIVEG--PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 DAI E R+ + E+LL N ++ I + + Sbjct: 50 TDAIEMQGFDKNEVIEYNRESFELEPEKLL-NFIKFRRSIRQYKDIE 95 >gi|226361233|ref|YP_002779011.1| ferredoxin--NADP(+) reductase [Rhodococcus opacus B4] gi|226239718|dbj|BAH50066.1| putative ferredoxin--NADP(+) reductase [Rhodococcus opacus B4] Length = 561 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 5/76 (6%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C C A+CP I G R ID + CI CG C +ACP Sbjct: 1 MAHVVTQSCCNDASCVAVCPVDCIHPTPNE---PGYGRAEMLYIDPVGCIDCGACIDACP 57 Query: 115 VDAIVEGPNFEFATET 130 VDAI+ P+++ ET Sbjct: 58 VDAIL--PDYDLTPET 71 >gi|52548542|gb|AAU82391.1| formate hydrogenlyase subunit 6/NADH-ubiquinone oxidoreductase 23 kD subunit [uncultured archaeon GZfos17C7] gi|52549750|gb|AAU83599.1| formate hydrogenlyase subunit 6/NADH-ubiquinone oxidoreductase 23 kD subunit [uncultured archaeon GZfos32E4] gi|52550198|gb|AAU84047.1| formate hydrogenlyase subunit 6/NADH-ubiquinone oxidoreductase 23 kD subunit [uncultured archaeon GZfos36D8] Length = 250 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 11/111 (9%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 T+ YP E+ S FRG ++CI+C C +CPA AI ++ P + Sbjct: 41 TVFYPRERKKMSDNFRGFILF-----DPDKCISCFNCSFVCPANAIRMKEAPN------K 89 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLN 143 ID +CI+C C ++C A+ + A + E++ E ++ Sbjct: 90 RYYPTIDYGRCIFCHFCIDSCSGGALKATKIHDVAYKDMDEMFTPTEEMIE 140 Score = 41.6 bits (96), Expect = 0.039, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 7/61 (11%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + CI C++CE +C + AI+ + +R ID KC CGLC + Sbjct: 184 MVSQCIDRASCIGCRVCEEMCESGAISSSAE-------NGMLRMKIDTDKCTGCGLCVKE 236 Query: 113 C 113 C Sbjct: 237 C 237 >gi|400072|sp|P30826|NDUS8_TRYBB RecName: Full=NADH-ubiquinone oxidoreductase subunit 8; AltName: Full=Maxicircle iron-sulfur protein 1 gi|552291|gb|AAA91499.1| NADH dehydrogenase subunit 8 [Trypanosoma brucei] Length = 145 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 38/90 (42%), Positives = 46/90 (51%), Gaps = 1/90 (1%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 TI P E S RG H LR Y G ERCIAC+LC+ ICP+ A+ + G G R Sbjct: 22 VTICLPIELTIVSLLVRGNHFLRFYWCGLERCIACRLCDLICPSLALDVRVGWSFG-GHR 80 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 + + +CIYCG C CP DAI Sbjct: 81 FADWFTLSYRRCIYCGFCMHVCPTDAITHS 110 >gi|258516935|ref|YP_003193157.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Desulfotomaculum acetoxidans DSM 771] gi|257780640|gb|ACV64534.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Desulfotomaculum acetoxidans DSM 771] Length = 677 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 33/101 (32%), Positives = 43/101 (42%), Gaps = 14/101 (13%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 LR FF+ + + + L Y E++CIAC +C CP AI+ Sbjct: 540 TLR-FFRDEYIAHIRDKHCPAGVC----KDLLHYLVLEDQCIACGICAKACPVDAIS--- 591 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 G R+ Y ID KCI CG C E CP D I+ G Sbjct: 592 ------GERKKPPYKIDPEKCIRCGACMEKCPKDVIIRGSI 626 >gi|147919860|ref|YP_686389.1| ech hydrogenase, subunit F [uncultured methanogenic archaeon RC-I] gi|110621785|emb|CAJ37063.1| Ech hydrogenase, subunit F [uncultured methanogenic archaeon RC-I] Length = 150 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 30/124 (24%), Positives = 45/124 (36%), Gaps = 17/124 (13%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + ++ F T NYP+ P R + +CI C LC+ CP Sbjct: 1 MLKILENIVKNAFSPVYTSNYPYTPYQHFPGTRADVTF-----DGTKCILCGLCQRSCPP 55 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL- 134 + I I + +CI CG C CP +AIV+ + +R+ L Sbjct: 56 ECIIIHKEKEE---------IEYLNTQCIRCGYCVRVCPTNAIVQNEVY--TKPSRERLT 104 Query: 135 YYDK 138 Y K Sbjct: 105 IYTK 108 >gi|254974321|ref|ZP_05270793.1| putative reductase [Clostridium difficile QCD-66c26] gi|255091717|ref|ZP_05321195.1| putative reductase [Clostridium difficile CIP 107932] gi|255313445|ref|ZP_05355028.1| putative reductase [Clostridium difficile QCD-76w55] gi|255516133|ref|ZP_05383809.1| putative reductase [Clostridium difficile QCD-97b34] gi|255649229|ref|ZP_05396131.1| putative reductase [Clostridium difficile QCD-37x79] gi|260682403|ref|YP_003213688.1| putative reductase [Clostridium difficile CD196] gi|260686002|ref|YP_003217135.1| putative reductase [Clostridium difficile R20291] gi|306519331|ref|ZP_07405678.1| putative reductase [Clostridium difficile QCD-32g58] gi|260208566|emb|CBA61245.1| putative reductase [Clostridium difficile CD196] gi|260212018|emb|CBE02566.1| putative reductase [Clostridium difficile R20291] Length = 273 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 38/107 (35%), Gaps = 14/107 (13%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 E+C+ C +CE+ C AI ++ CI CG C CP Sbjct: 1 MIDINLEKCVGCGMCESDCLVNAIKVKDDKAKVKNI-----------LCINCGHCMAICP 49 Query: 115 VDAIVEG--PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 DAI E R+ + E+LL N ++ I + + Sbjct: 50 TDAIEMQGFDKNEVIEYNRESFELEPEKLL-NFIKFRRSIRQYKDIE 95 >gi|317154073|ref|YP_004122121.1| hypothetical protein Daes_2370 [Desulfovibrio aespoeensis Aspo-2] gi|316944324|gb|ADU63375.1| hypothetical protein Daes_2370 [Desulfovibrio aespoeensis Aspo-2] Length = 146 Score = 59.3 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 14/103 (13%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 + + T YPF P +RGE + + CI C C CP+Q I ++ Sbjct: 6 TVIMNLLRKPATRQYPFTVRDPFPNYRGELYI-----DIDGCIFCGTCARKCPSQCIEVD 60 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 + D C+YCG+C++ CP + Sbjct: 61 KE---------QGLWTCDPHACVYCGICRDTCPTKCLHMKDVH 94 >gi|153006624|ref|YP_001380949.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Anaeromyxobacter sp. Fw109-5] gi|152030197|gb|ABS27965.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Anaeromyxobacter sp. Fw109-5] Length = 256 Score = 59.0 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 39/104 (37%), Gaps = 16/104 (15%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERC-IACKLCEAICPAQAITIESGPRCHDGTR 91 T+ +P RFRG + RC C C CP +AI Sbjct: 15 TVAFPDGPAKFPARFRGRPVV-----DPARCADGCADCAERCPTEAILDPGRASMA---- 65 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 +D+ +C++CG C EACP A+ + A R+ L Sbjct: 66 ------VDLGRCLFCGECAEACPSGALRFTNDHRLAARDREALV 103 >gi|303247448|ref|ZP_07333720.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio fructosovorans JJ] gi|302491144|gb|EFL51036.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfovibrio fructosovorans JJ] Length = 253 Score = 59.0 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 45/118 (38%), Gaps = 15/118 (12%) Query: 19 AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78 F + L + + T+ +P PR+RG L C A +C +CP A+ Sbjct: 1 MFRILLERLQQGRRTVAFPKSLPPLPPRYRGRPELV-DGPCVSDCKA--VCAGLCPTGAL 57 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 + +D+ +CI CG C ACP + + A+ +R+ L Sbjct: 58 GFDHDG-----------LYLDLGRCILCGACA-ACPGGRVRFTGDHRLASTSREGLIL 103 >gi|126698285|ref|YP_001087182.1| putative reductase [Clostridium difficile 630] gi|115249722|emb|CAJ67539.1| putative nitroreductase [Clostridium difficile] Length = 273 Score = 59.0 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 38/107 (35%), Gaps = 14/107 (13%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 E+C+ C +CE+ C AI ++ CI CG C CP Sbjct: 1 MIDINLEKCVGCGMCESDCLVNAIKVKDDKAKVKNI-----------LCINCGHCMAICP 49 Query: 115 VDAIVEG--PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 DAI E R+ + E+LL N ++ I + + Sbjct: 50 TDAIEMQGFDKNEVIEYNRETFELEPEKLL-NFIKFRRSIRQYKDIE 95 >gi|317485984|ref|ZP_07944839.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316922757|gb|EFV43988.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 279 Score = 59.0 bits (141), Expect = 2e-07, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 34/108 (31%), Gaps = 10/108 (9%) Query: 20 FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79 + K T +PF + T R RG + C+ C C +C A AI Sbjct: 4 LKILWDNLKKGPVTDAFPFGETYTPDRLRGRVEI-----DPALCVGCGTCVHVCAAGAIN 58 Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 I + C C C+ CP A+ ++ A Sbjct: 59 ISKFEDGSG-----FEITVWRNSCCLCAQCRHYCPTKAVTLTNDWHSA 101 >gi|169831264|ref|YP_001717246.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Candidatus Desulforudis audaxviator MP104C] gi|169638108|gb|ACA59614.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Candidatus Desulforudis audaxviator MP104C] Length = 126 Score = 58.6 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 30/96 (31%), Positives = 39/96 (40%), Gaps = 10/96 (10%) Query: 25 RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84 + + T YPFEK + P RG + C C LCE +CP+QAI Sbjct: 10 KNLAGSPATRKYPFEKRAYFPGARGRLEI-----DFLTCGYCGLCERVCPSQAIKKIGDK 64 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + D T + CIYCG C E C A+ Sbjct: 65 KDPDVTILYKPF-----ACIYCGRCVEVCKFGAVQI 95 >gi|288574135|ref|ZP_06392492.1| Cobyrinic acid ac-diamide synthase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569876|gb|EFC91433.1| Cobyrinic acid ac-diamide synthase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 286 Score = 58.6 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 29/114 (25%), Positives = 37/114 (32%), Gaps = 22/114 (19%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P E+ + EE CI C C C A+ + G Sbjct: 49 PKEQEEIP-----FMGMDGAEVDEETCIGCGKCRDFCRFDAVAMVDGKA----------- 92 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGP----NFEFATETRQELYYDKERLLNNGD 146 I KC C C CPV AI P N+ A + +L Y RL G+ Sbjct: 93 RIRQGKCEGCAGCTMVCPVQAISMVPRRQGNWYKADTGKGKLVY--ARLYPGGE 144 >gi|154149578|ref|YP_001403196.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Candidatus Methanoregula boonei 6A8] gi|153998130|gb|ABS54553.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Methanoregula boonei 6A8] Length = 132 Score = 58.6 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 45/112 (40%), Gaps = 14/112 (12%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80 L+ F T+ YP + + RG + E+CIAC+ C+ CP QAI + Sbjct: 8 KTVLKSLFSRPATLMYPAKPAKKAALTRGHVTIV-----PEKCIACRTCQRKCPTQAIIV 62 Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 + + + ID ++CI C C E CP + + + R Sbjct: 63 DVKEKT---------WQIDRLRCIVCNCCVETCPTKCLAMDTQYYESMTARG 105 >gi|21228427|ref|NP_634349.1| ech hydrogenase subunit [Methanosarcina mazei Go1] gi|20906904|gb|AAM32021.1| Ech Hydrogenase, Subunit [Methanosarcina mazei Go1] Length = 126 Score = 58.6 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 30/107 (28%), Positives = 42/107 (39%), Gaps = 14/107 (13%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 +G L L T YPFE T F+G + E CI C LC+ CP Sbjct: 4 MGMLNLVLSNISHKPATRLYPFEIRETYKEFKGRIVI-----NPENCILCGLCQKKCPPD 58 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 AIT+ + ++I++ +CI C C CP D + Sbjct: 59 AITVTKADKT---------WEINLFRCIMCTECVTGCPKDCLSISNE 96 >gi|307353715|ref|YP_003894766.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307156948|gb|ADN36328.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanoplanus petrolearius DSM 11571] Length = 134 Score = 58.6 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 47/139 (33%), Gaps = 36/139 (25%) Query: 15 EFVGAFFLCLRYFFKAKTTINYPFE----------------------KGSTSPRFRGEHA 52 F+ L+ K T +P + T FRG+ Sbjct: 2 SFLPTMVEVLKQILKKPATNLFPAKYLPKSITGFLGKVAEGKAEINPPVPTPENFRGKI- 60 Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + CI CK+C +CPA AI + I + +CI+C C +A Sbjct: 61 ----TYDRDICIGCKICTRVCPANAIEFIKETKTV---------RIYVTQCIFCSQCNDA 107 Query: 113 CPVDAIVEGPNFEFATETR 131 CPV + +F A E R Sbjct: 108 CPVHCLHMSEDFLLADEDR 126 >gi|170290729|ref|YP_001737545.1| heterodisulfide reductase, subunit A [Candidatus Korarchaeum cryptofilum OPF8] gi|170174809|gb|ACB07862.1| Heterodisulfide reductase, subunit A [Candidatus Korarchaeum cryptofilum OPF8] Length = 656 Score = 58.6 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 32/127 (25%), Positives = 41/127 (32%), Gaps = 7/127 (5%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M + L +E V ++ K K N K S +R+ Sbjct: 192 MGVLNWEGRRLSGREIVRTLIKMVKDNPKIKVYTNSEVVKVDGSIGNFKITVMRKPRYVN 251 Query: 61 ERCIACKLCEAICPAQAITIE-------SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 ERC C CE +CP RY ID C +CG C E C Sbjct: 252 ERCNLCGKCEEVCPVSVPDEYEYGIKKRKAIYLPYSGAYPERYVIDPNSCTFCGKCVEVC 311 Query: 114 PVDAIVE 120 PV+AI Sbjct: 312 PVNAIDL 318 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 6/61 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E +C C +C +ICP AI+++ ++ ID + C CG C ACP AI Sbjct: 583 DESKCSGCGICVSICPFNAISMQKREDGTRYSK------IDPLLCEGCGTCVAACPSAAI 636 Query: 119 V 119 Sbjct: 637 Q 637 Score = 39.7 bits (91), Expect = 0.12, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 17/35 (48%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 ++D KC CG+C CP +AI + ++ Sbjct: 581 EVDESKCSGCGICVSICPFNAISMQKREDGTRYSK 615 >gi|41033685|emb|CAF18509.1| putative 2-oxoglutarate synthase, 2-oxoacid-ferredoxin oxidoreductases delta subunit [Thermoproteus tenax] Length = 102 Score = 58.6 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 32/65 (49%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +ERCI C++C CP I G G + V+Y+ID C CG+C CPV AI Sbjct: 37 HDERCIRCRVCWMYCPEGTIKEVRGEFVVKGHKYQVKYEIDYNYCKGCGICAHECPVKAI 96 Query: 119 VEGPN 123 P Sbjct: 97 EMVPE 101 >gi|45359026|ref|NP_988583.1| polyferredoxin [Methanococcus maripaludis S2] gi|45047901|emb|CAF31019.1| polyferredoxin [Methanococcus maripaludis S2] Length = 393 Score = 58.6 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 31/113 (27%), Positives = 46/113 (40%), Gaps = 14/113 (12%) Query: 9 SFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKL 68 S +L EFV + +F T E RFR + + E+CI+C Sbjct: 4 SIWYLYEFVR------KKWFMRFTNAKSEKESFIPPERFRKIPVI---FDLPEKCISCSA 54 Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C+ CP+ AI++E + D CI CG C E+CP + + G Sbjct: 55 CKESCPSDAISMEFNEEF-----KKEMPVFDAGSCINCGNCVESCPTNVLEMG 102 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 29/84 (34%), Gaps = 4/84 (4%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI----ESGPRCHDGTRRTVRYDI 98 S F E CI C C CP + + + + + I Sbjct: 64 ISMEFNEEFKKEMPVFDAGSCINCGNCVESCPTNVLEMGTLRKEAKELLWNVPKIINLLI 123 Query: 99 DMIKCIYCGLCQEACPVDAIVEGP 122 D C+ CG C+ ACPVDAI Sbjct: 124 DEEVCVSCGTCENACPVDAISHNN 147 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 33/104 (31%), Positives = 47/104 (45%), Gaps = 17/104 (16%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 Y EE+CI C++C C P ++ T I+ C+ CGLCQ ACP Sbjct: 275 CYIVDEEKCIGCRICYRSCNV--------PEAILISKETNLPYINPEYCVRCGLCQNACP 326 Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158 VDAI TET ++L Y K + D +ES + ++ Sbjct: 327 VDAIDY-----LKTETSEDL-YSKRK---IRDEFESILHSDLEE 361 Score = 40.5 bits (93), Expect = 0.081, Method: Composition-based stats. Identities = 31/94 (32%), Positives = 45/94 (47%), Gaps = 13/94 (13%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + EE C++C CE CP AI+ + T Y+ID+ C+ C C Sbjct: 116 PKIINLLIDEEVCVSCGTCENACPVDAISHNN----------TGLYEIDVNLCVSCKNCL 165 Query: 111 EACPV-DAIVEGPNFEFAT--ETRQELYYDKERL 141 +ACPV +AIV E + E Q + +D+ERL Sbjct: 166 KACPVENAIVTYSEPELSEKIEIAQNIKFDRERL 199 Score = 37.4 bits (85), Expect = 0.73, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 24/60 (40%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 + A + + + R+ KCI C C+E+CP DAI N EF E Sbjct: 16 WFMRFTNAKSEKESFIPPERFRKIPVIFDLPEKCISCSACKESCPSDAISMEFNEEFKKE 75 Score = 34.7 bits (78), Expect = 4.4, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 22/82 (26%), Gaps = 23/82 (28%) Query: 56 YPNGEERCIACKLCEAICPA-QAITIESGPR----------------------CHDGTRR 92 Y C++CK C CP AI S P Sbjct: 151 YEIDVNLCVSCKNCLKACPVENAIVTYSEPELSEKIEIAQNIKFDRERLGSEFKEKSDVI 210 Query: 93 TVRYDIDMIKCIYCGLCQEACP 114 I CI CG C + CP Sbjct: 211 AEIPRIVPSLCIGCGNCVDVCP 232 >gi|218883496|ref|YP_002427878.1| dihydroorotate dehydrogenase family protein [Desulfurococcus kamchatkensis 1221n] gi|218765112|gb|ACL10511.1| dihydroorotate dehydrogenase family protein [Desulfurococcus kamchatkensis 1221n] Length = 407 Score = 58.2 bits (139), Expect = 3e-07, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 7/62 (11%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E++CI C CE +C A+ +E +R R +I KC CGLC CP AI Sbjct: 350 DEKKCIGCGFCEQVCNYDAVHVE-----ESSGKRVARVNIM--KCYGCGLCTSVCPTRAI 402 Query: 119 VE 120 Sbjct: 403 HF 404 Score = 34.7 bits (78), Expect = 4.9, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 15/35 (42%) Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + +D KCI CG C++ C DA+ Sbjct: 336 KPEPRRVWAQPPVVDEKKCIGCGFCEQVCNYDAVH 370 >gi|317128887|ref|YP_004095169.1| pyruvate/ketoisovalerate oxidoreductase, subunit gamma [Bacillus cellulosilyticus DSM 2522] gi|315473835|gb|ADU30438.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit [Bacillus cellulosilyticus DSM 2522] Length = 337 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 2/75 (2%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 CI C C+ +CP E G G ++ ID C C C +ACP +A Sbjct: 251 YDSNTCIHCAACDTVCPDYCFVWEEGED-KRGRKQMFLKGIDYQYCKGCLKCVDACPTEA 309 Query: 118 IV-EGPNFEFATETR 131 + +A E R Sbjct: 310 LQDMIEELGYAEENR 324 >gi|126459791|ref|YP_001056069.1| thiamine pyrophosphate binding domain-containing protein [Pyrobaculum calidifontis JCM 11548] gi|126249512|gb|ABO08603.1| thiamine pyrophosphate enzyme domain protein TPP-binding [Pyrobaculum calidifontis JCM 11548] Length = 593 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 10/71 (14%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R L RY ++C++C +C + AI+ SG + ID C+ CG Sbjct: 517 RSGVRLPRYFVDVDKCVSCGICYNVLKCSAISKASGGKA----------YIDPALCVGCG 566 Query: 108 LCQEACPVDAI 118 +C E CPV AI Sbjct: 567 VCAEVCPVGAI 577 >gi|48478111|ref|YP_023817.1| formate dehydrogenase alpha chain [Picrophilus torridus DSM 9790] gi|48430759|gb|AAT43624.1| formate dehydrogenase alpha chain [Picrophilus torridus DSM 9790] Length = 976 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 39/105 (37%), Gaps = 11/105 (10%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQE 111 Y CI C C C + R V D I+ C+ CG C Sbjct: 137 FYRYDPNECILCGRCVEACQDVEVNETIHIDWTLERPRVVWDDGKMINESSCVSCGHCVT 196 Query: 112 ACPVDAIVEGPNFEFATE----TRQELYYDKERLLNNGDRWESEI 152 CPV+A++E E A TR+ KE L++ G E ++ Sbjct: 197 VCPVNALMEKSMLEEAGYFTSLTRKA----KESLIDFGKNLEDQL 237 Score = 37.8 bits (86), Expect = 0.52, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 20/69 (28%), Gaps = 9/69 (13%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQA-----ITIESGPRCHDGTRRTVRYDIDMIKCI 104 R C C C + + + ++ Y D +CI Sbjct: 87 RLLREHNLHCTVCENNNGDCALHNAVDSSGLERQKYKYEKKPYEIDDSNPFYRYDPNECI 146 Query: 105 YCGLCQEAC 113 CG C EAC Sbjct: 147 LCGRCVEAC 155 >gi|212690609|ref|ZP_03298737.1| hypothetical protein BACDOR_00095 [Bacteroides dorei DSM 17855] gi|212666855|gb|EEB27427.1| hypothetical protein BACDOR_00095 [Bacteroides dorei DSM 17855] Length = 582 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 6/70 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQ 110 + CI+C +C CP AI P + ID KCIYCG C Sbjct: 245 WIDHDTCISCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDENKCIYCGKCM 304 Query: 111 EACPVDAIVE 120 ACP AI E Sbjct: 305 NACPFGAIFE 314 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIACK--LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + + C C C+ CP A+ + + ID CI CG+C + Sbjct: 209 QINYEITDLCRGCTARSCQYNCPKGAVHVHADTGKAW---------IDHDTCISCGICHK 259 Query: 112 ACPVDAIVEGP 122 +CP AIV P Sbjct: 260 SCPYHAIVYIP 270 >gi|126178309|ref|YP_001046274.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanoculleus marisnigri JR1] gi|125861103|gb|ABN56292.1| ech hydrogenase subunit F [Methanoculleus marisnigri JR1] Length = 137 Score = 58.2 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 39/116 (33%), Gaps = 14/116 (12%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 LR T YP + RG C +C LC CP Sbjct: 3 IFQMTKTVLRNLAGGPATRQYPAVPARSCSLTRGHIVF-----DPATCRSCSLCVKRCPC 57 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 +AI ++ + ++ID ++CI CG C E CP ++ ++ Sbjct: 58 EAIRLDKEAK---------VWEIDRMRCIACGDCVEGCPFGSLTMEQSYHPPVTEH 104 >gi|125972862|ref|YP_001036772.1| NADH dehydrogenase (quinone) [Clostridium thermocellum ATCC 27405] gi|256005732|ref|ZP_05430687.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 2360] gi|281417061|ref|ZP_06248081.1| NADH dehydrogenase (quinone) [Clostridium thermocellum JW20] gi|125713087|gb|ABN51579.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Clostridium thermocellum ATCC 27405] gi|255990305|gb|EEU00432.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 2360] gi|281408463|gb|EFB38721.1| NADH dehydrogenase (quinone) [Clostridium thermocellum JW20] gi|316940900|gb|ADU74934.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 1313] Length = 597 Score = 57.8 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 10/68 (14%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 AL Y E+C +C +C CP +AI+ E + V Y ID KCI CG+C Sbjct: 536 KALMHYEIDAEKCKSCGICARQCPVKAISGE----------KKVPYVIDQNKCIKCGVCM 585 Query: 111 EACPVDAI 118 E CP AI Sbjct: 586 EKCPFKAI 593 >gi|150399525|ref|YP_001323292.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanococcus vannielii SB] gi|150012228|gb|ABR54680.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus vannielii SB] Length = 394 Score = 57.8 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 46/113 (40%), Gaps = 14/113 (12%) Query: 9 SFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKL 68 S +L EFV + +FK T E RFR + E+CI+C Sbjct: 4 SIWYLYEFVR------KKWFKKFTNAKSEKESYIEPERFRKIPV---TVDFPEKCISCSA 54 Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C CP+ AI ++ + + D D CI CG C E+CP + + G Sbjct: 55 CAESCPSDAILMKHNEEYNR-----IMPDFDDGSCINCGNCVESCPTEVLEMG 102 Score = 40.1 bits (92), Expect = 0.094, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 8/67 (11%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + + +++CI C++C C P + ++ T ID I C+ CG+C+ C Sbjct: 274 KCHTINDKKCIGCRICYKSCNV--------PNALNISKETNLPYIDPIYCVRCGICENVC 325 Query: 114 PVDAIVE 120 PVDA+ Sbjct: 326 PVDAVDI 332 Score = 38.9 bits (89), Expect = 0.21, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 10/70 (14%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 E C++C CE +CP AI+ R Y ID+ C+ C C ++C Sbjct: 119 INLVIDSEVCVSCSSCEKVCPVDAISHN----------RFSIYKIDVNSCVSCKKCIDSC 168 Query: 114 PVDAIVEGPN 123 PV+ + + Sbjct: 169 PVENAILTYD 178 Score = 38.9 bits (89), Expect = 0.22, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 22/53 (41%) Query: 74 PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 A + + + R+ KCI C C E+CP DAI+ N E+ Sbjct: 20 FTNAKSEKESYIEPERFRKIPVTVDFPEKCISCSACAESCPSDAILMKHNEEY 72 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 2/51 (3%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 C+ C C ++CP AI + + T++ + I+ KCI C +C ++C Sbjct: 245 CVKCGHCLSVCPTSAIRTGTLAKITKNTKKC--HTINDKKCIGCRICYKSC 293 >gi|332295480|ref|YP_004437403.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Thermodesulfobium narugense DSM 14796] gi|332178583|gb|AEE14272.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Thermodesulfobium narugense DSM 14796] Length = 157 Score = 57.8 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 33/132 (25%), Positives = 50/132 (37%), Gaps = 13/132 (9%) Query: 22 LCLRYFFKAKTTINYPFEKGST-SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80 + + FK T + F G + RCIAC +C+ CPA+ I I Sbjct: 7 ILIENIFKPPITEDISSVNLPKHPKGFHGHPE-----HDPTRCIACGICQYFCPAKVIKI 61 Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140 + Y +D+ +C CG C + CP +AI PN F T + D + Sbjct: 62 SQIDDK-------INYHMDLDQCTCCGQCIDYCPTNAIKHRPNPYFVTTNLDDFKVDHQI 114 Query: 141 LLNNGDRWESEI 152 L + + I Sbjct: 115 NLIKCAKCGAFI 126 >gi|150002944|ref|YP_001297688.1| putative hydrogenase [Bacteroides vulgatus ATCC 8482] gi|149931368|gb|ABR38066.1| putative hydrogenase [Bacteroides vulgatus ATCC 8482] Length = 583 Score = 57.8 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 6/70 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQ 110 + CI+C +C CP AI P + ID KCIYCG C Sbjct: 245 WIDHDTCISCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDENKCIYCGKCM 304 Query: 111 EACPVDAIVE 120 ACP AI E Sbjct: 305 NACPFGAIFE 314 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIACK--LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + + C C C+ CP A+ + + ID CI CG+C + Sbjct: 209 QINYEITDLCRGCTARSCQYNCPKGAVHVHADTGKAW---------IDHDTCISCGICHK 259 Query: 112 ACPVDAIVEGP 122 +CP AIV P Sbjct: 260 SCPYHAIVYIP 270 >gi|326331682|ref|ZP_08197970.1| ferredoxin--NADP reductase [Nocardioidaceae bacterium Broad-1] gi|325950481|gb|EGD42533.1| ferredoxin--NADP reductase [Nocardioidaceae bacterium Broad-1] Length = 536 Score = 57.8 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 5/68 (7%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C C +CP I G I +CI CG C++ACPV+AI Sbjct: 7 QSCCNDASCVEVCPVDCIHPGPDE---PGFGAAEMLYIHPDECIDCGACEDACPVNAIF- 62 Query: 121 GPNFEFAT 128 P++E Sbjct: 63 -PDYEVPD 69 >gi|255016559|ref|ZP_05288685.1| putative hydrogenase [Bacteroides sp. 2_1_7] gi|256842203|ref|ZP_05547707.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|262384870|ref|ZP_06078002.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|298377650|ref|ZP_06987601.1| Fe-hydrogenase large subunit family protein [Bacteroides sp. 3_1_19] gi|301308948|ref|ZP_07214893.1| Fe-hydrogenase large subunit family protein [Bacteroides sp. 20_3] gi|256736087|gb|EEU49417.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|262293586|gb|EEY81522.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|298265353|gb|EFI07015.1| Fe-hydrogenase large subunit family protein [Bacteroides sp. 3_1_19] gi|300832974|gb|EFK63599.1| Fe-hydrogenase large subunit family protein [Bacteroides sp. 20_3] Length = 478 Score = 57.8 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 36/93 (38%), Gaps = 12/93 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQEA 112 E CI+C C CP AI P + ID KCIYCG C A Sbjct: 148 DHETCISCGKCHQSCPYHAIVYIPIPCEEVCPVKAISKDEYGVEHIDESKCIYCGKCVNA 207 Query: 113 CPVDAIVE-GPNFEFATETRQELYYDKERLLNN 144 CP AI E F+ R +KE+++ Sbjct: 208 CPFGAIFEISQVFDILQRLR-----NKEQMVAI 235 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 30/98 (30%), Gaps = 12/98 (12%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------------ITIESGPR 85 E S + C+ + C + + P+ Sbjct: 75 DELTPLSEYAKRALFRSENKKENIMCVVDEACSSCVSVNYEITNLCRGCVARSCYMNCPK 134 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 ++ + +ID CI CG C ++CP AIV P Sbjct: 135 DAIRFKKNGQAEIDHETCISCGKCHQSCPYHAIVYIPI 172 >gi|150006680|ref|YP_001301423.1| putative hydrogenase [Parabacteroides distasonis ATCC 8503] gi|149935104|gb|ABR41801.1| putative hydrogenase [Parabacteroides distasonis ATCC 8503] Length = 478 Score = 57.8 bits (138), Expect = 4e-07, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 36/93 (38%), Gaps = 12/93 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQEA 112 E CI+C C CP AI P + ID KCIYCG C A Sbjct: 148 DHETCISCGKCHQSCPYHAIVYIPIPCEEVCPVKAISKDKYGVEHIDESKCIYCGKCVNA 207 Query: 113 CPVDAIVE-GPNFEFATETRQELYYDKERLLNN 144 CP AI E F+ R +KE+++ Sbjct: 208 CPFGAIFEISQVFDILQRLR-----NKEQMVAI 235 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 30/98 (30%), Gaps = 12/98 (12%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------------ITIESGPR 85 E S + C+ + C + + P+ Sbjct: 75 DELTPLSEYAKRALFRSENKKENIMCVVDEACSSCVSVNYEITNLCRGCVARSCYMNCPK 134 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 ++ + +ID CI CG C ++CP AIV P Sbjct: 135 DAIRFKKNGQAEIDHETCISCGKCHQSCPYHAIVYIPI 172 >gi|327311337|ref|YP_004338234.1| pyruvate/ketoisovalerate oxidoreductase subunit delta [Thermoproteus uzoniensis 768-20] gi|326947816|gb|AEA12922.1| pyruvate/ketoisovalerate oxidoreductase, delta subunit [Thermoproteus uzoniensis 768-20] Length = 102 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 30/65 (46%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++RCI C++C CP I G G + +Y+ID C CG+C CP AI Sbjct: 37 HDDRCIRCRICWTYCPEGTIKEIKGEFVVKGRKYQYKYEIDYNYCKGCGICAHECPTKAI 96 Query: 119 VEGPN 123 P Sbjct: 97 EMVPE 101 >gi|197119557|ref|YP_002139984.1| Ech-hydrogenase-like complex small subunit [Geobacter bemidjiensis Bem] gi|197088917|gb|ACH40188.1| Ech-hydrogenase-related complex, small subunit [Geobacter bemidjiensis Bem] Length = 252 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 31/126 (24%), Positives = 48/126 (38%), Gaps = 24/126 (19%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 T+ YP E + RFRG ++ ++ C+ C CP A+ + G Sbjct: 15 TMAYPREPLALPERFRGYPEIKADLCPKD----CRACADACPVDALECQPDLSLDLG--- 67 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEI 152 KC++C C ACP AI P+ A R+EL + GD E + Sbjct: 68 ---------KCLFCPECSRACPQGAITHTPDARLAANHREELV------VRPGD--EHRL 110 Query: 153 VRNIVT 158 + + Sbjct: 111 AQALEK 116 >gi|218885304|ref|YP_002434625.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756258|gb|ACL07157.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 491 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 42/102 (41%), Gaps = 17/102 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 C C LCE CP A+++ P G +R R +D C+ CG C CP Sbjct: 353 RCDASLCNGCGLCERACPVDAVSL---PVPPGGRKRDRRCAVDEAYCLGCGACALKCPTG 409 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158 A+ P R+ ++L+ D +E I++++ Sbjct: 410 ALRLHP--------RER------KVLHPADSFERVILQSLER 437 >gi|3005972|emb|CAA76122.1| echF [Methanosarcina barkeri] Length = 122 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 40/107 (37%), Gaps = 14/107 (13%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 +G L L + T YPFE F+G E CI C LC+ CP Sbjct: 1 MGMLNLVLTNISRKPATRLYPFEIREPFKEFKGRIVF-----DPENCILCGLCQKKCPPD 55 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 AIT+ + +++++ +CI C C CP + Sbjct: 56 AITVTKADKT---------WELNLFRCIMCTECVNGCPKGCLSISNE 93 >gi|290967889|ref|ZP_06559439.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Megasphaera genomosp. type_1 str. 28L] gi|290782028|gb|EFD94606.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Megasphaera genomosp. type_1 str. 28L] Length = 1173 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 43/113 (38%), Gaps = 15/113 (13%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT---------------IESGPRCH 87 TS + AL E+CI C C +CP I + P+ Sbjct: 668 TSKYEKAAPALHVPSWDAEKCIGCMQCSFVCPHATIRPSLTTKEETAAAPAGYKVAPKAR 727 Query: 88 DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140 G + V +D C+ CG C + CPVDA+ PN + + YY E+ Sbjct: 728 AGKQYDVAIVVDQDDCLECGSCVDVCPVDALTMVPNVDTERAKMELWYYATEK 780 >gi|289596354|ref|YP_003483050.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Aciduliprofundum boonei T469] gi|289534141|gb|ADD08488.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Aciduliprofundum boonei T469] Length = 148 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 14/103 (13%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR-------TVR 95 T P FRG+ + C+ C LC +CP+ AI + + + ++ Sbjct: 48 TPPGFRGKLE-----YDIDECVGCGLCAQVCPSHAIELVRDKKWIIMHCKEGAKLAAPLK 102 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR--QELYY 136 I + +C++CG C + CP + F A E + ++L Sbjct: 103 IKIYVSRCVFCGQCVDVCPRKCLKMSDEFLLANEDKLAEDLII 145 >gi|256828363|ref|YP_003157091.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfomicrobium baculatum DSM 4028] gi|256577539|gb|ACU88675.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfomicrobium baculatum DSM 4028] Length = 425 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 38/101 (37%), Gaps = 16/101 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C C LC CP A+++E R+ + C+ CG+C CP AI Sbjct: 288 DETLCTGCGLCAKACPVNAVSVE--KISGQDARKPKKLADMKEHCLGCGVCALKCPTGAI 345 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 +R + Y E D +E +++ + D Sbjct: 346 TLQ--------SRPQKVYHPE------DSFERVMLQALERD 372 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 11/21 (52%), Positives = 15/21 (71%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 +D C CGLC +ACPV+A+ Sbjct: 287 VDETLCTGCGLCAKACPVNAV 307 >gi|73667697|ref|YP_303712.1| ech hydrogenase subunit F [Methanosarcina barkeri str. Fusaro] gi|72394859|gb|AAZ69132.1| ech hydrogenase subunit F [Methanosarcina barkeri str. Fusaro] Length = 122 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 40/107 (37%), Gaps = 14/107 (13%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 +G L L + T YPFE F+G E CI C LC+ CP Sbjct: 1 MGMLNLVLTNISRKPATRLYPFEIREPFKEFKGRIVF-----DPENCILCGLCQKKCPPD 55 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 AIT+ + +++++ +CI C C CP + Sbjct: 56 AITVTKADKT---------WELNLFRCIMCTECVNGCPKGCLSISNE 93 >gi|291280504|ref|YP_003497339.1| ferredoxin-dependent glutamate synthase subunit beta [Deferribacter desulfuricans SSM1] gi|290755206|dbj|BAI81583.1| ferredoxin-dependent glutamate synthase, beta subunit [Deferribacter desulfuricans SSM1] Length = 777 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 33/109 (30%), Gaps = 2/109 (1%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 L F KA +K A + ++RC++C C + Sbjct: 666 FRGLS--LDDFKKAPVIPQDKMKKEYYPLLNPMAVAEKEPEFEKDRCMSCGFCRDCEMCK 723 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 + E T Y D KCI CG+C CP N E Sbjct: 724 DVCPEQAIVRIQNDDGTFEYYSDPNKCIGCGICAGVCPCGIWTMIDNVE 772 >gi|257077352|ref|ZP_05571713.1| formate dehydrogenase alpha chain [Ferroplasma acidarmanus fer1] Length = 978 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 44/119 (36%), Gaps = 11/119 (9%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD--- 97 TS + +++ Y ++CI C C C + R V D Sbjct: 125 PFTSKGYEPDYSNPFYRYDPDQCILCGRCVEACQDVEVNETLHIDWSLERPRVVWDDNKA 184 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE----TRQELYYDKERLLNNGDRWESEI 152 I+ C+ CG C CPV+A++E E A TR+ K L+ G E + Sbjct: 185 INDSSCVSCGHCVTVCPVNALMEKSMLEEAGYFTSLTRKA----KYNLIEFGKDLEKPV 239 >gi|312878987|ref|ZP_07738787.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260] gi|310782278|gb|EFQ22676.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260] Length = 597 Score = 57.8 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 30/97 (30%), Positives = 40/97 (41%), Gaps = 15/97 (15%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 +RY F+ + + +K AL + +CI C C +CP AIT E Sbjct: 513 TTIRY-FRHEYEAHIKDKKCPAGAC----VALTSFVIDPAKCIGCTKCARVCPVNAITGE 567 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + ID KC+ CG C EACPV AI Sbjct: 568 IKKP----------HVIDAEKCVKCGACAEACPVKAI 594 >gi|147677713|ref|YP_001211928.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit [Pelotomaculum thermopropionicum SI] gi|146273810|dbj|BAF59559.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit [Pelotomaculum thermopropionicum SI] Length = 650 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 31/97 (31%), Positives = 39/97 (40%), Gaps = 15/97 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 LR+ F+ + + + AL Y EERCIAC LC C QAI E Sbjct: 541 TLRH-FRKEYIAHVMDKTCPAGVC----KALLDYRVDEERCIACGLCAKACTVQAIYGEP 595 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 Y ID KC+ C C CP +AI+ Sbjct: 596 KKP----------YRIDPEKCVKCAACVARCPRNAIM 622 Score = 37.8 bits (86), Expect = 0.51, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 20/52 (38%) Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + + + Y +D +CI CGLC +AC V AI P Sbjct: 544 HFRKEYIAHVMDKTCPAGVCKALLDYRVDEERCIACGLCAKACTVQAIYGEP 595 >gi|282163147|ref|YP_003355532.1| Ech hydrogenase subunit F [Methanocella paludicola SANAE] gi|282155461|dbj|BAI60549.1| Ech hydrogenase subunit F [Methanocella paludicola SANAE] Length = 145 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 27/116 (23%), Positives = 41/116 (35%), Gaps = 14/116 (12%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + T NYPF P R + +CI C+LC+ CPA Sbjct: 1 MLKILENIFKNITSKPYTSNYPFTPYQHFPGTRADVTF-----DGTKCILCQLCQRSCPA 55 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 + I I + +CI CG C CP +AI + + ++ R Sbjct: 56 ECIIIHKEE---------TTVEYLNTQCIRCGYCVRVCPTNAISQNEVYTKPSKER 102 >gi|298373293|ref|ZP_06983282.1| Fe-hydrogenase large subunit family protein [Bacteroidetes oral taxon 274 str. F0058] gi|298274345|gb|EFI15897.1| Fe-hydrogenase large subunit family protein [Bacteroidetes oral taxon 274 str. F0058] Length = 491 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110 + CI+C +C CP AI P + + D ID KCIYCG C Sbjct: 146 QIDHDACISCGICHQSCPYHAIVYIPVPCEESCPVKAISKDEFGIEHIDESKCIYCGKCI 205 Query: 111 EACPVDAIVE 120 ACP AI E Sbjct: 206 NACPFGAIFE 215 Score = 40.9 bits (94), Expect = 0.057, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 10/83 (12%) Query: 48 RGEHALRRYPNGEERCIAC--------KLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 R +E C +C LC+ T P+ ++ + ID Sbjct: 91 RERLKENILCVIDEACSSCVQINYEITNLCKGCVARGCYTNC--PKNAVHFQKNGQAQID 148 Query: 100 MIKCIYCGLCQEACPVDAIVEGP 122 CI CG+C ++CP AIV P Sbjct: 149 HDACISCGICHQSCPYHAIVYIP 171 >gi|154491696|ref|ZP_02031322.1| hypothetical protein PARMER_01307 [Parabacteroides merdae ATCC 43184] gi|154087937|gb|EDN86982.1| hypothetical protein PARMER_01307 [Parabacteroides merdae ATCC 43184] Length = 481 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 27/68 (39%), Gaps = 6/68 (8%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQEA 112 + CI+C C CP AI P + ID KCIYCG C A Sbjct: 148 DHDTCISCGKCHQNCPYHAIVYIPIPCEEVCPVKAISKDEYGVEHIDESKCIYCGKCVNA 207 Query: 113 CPVDAIVE 120 CP AI E Sbjct: 208 CPFGAIFE 215 Score = 38.9 bits (89), Expect = 0.25, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 29/98 (29%), Gaps = 12/98 (12%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------------ITIESGPR 85 E S + C+ + C + + P+ Sbjct: 75 DELTPLSEYAKQALLRSENKKENLMCVVDEACSSCVQVNYEITNLCRGCVARSCYMNCPK 134 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 ++ + +ID CI CG C + CP AIV P Sbjct: 135 DAIRFKKNGQAEIDHDTCISCGKCHQNCPYHAIVYIPI 172 >gi|239942291|ref|ZP_04694228.1| putative ferredoxin reductase [Streptomyces roseosporus NRRL 15998] gi|239988757|ref|ZP_04709421.1| putative ferredoxin reductase [Streptomyces roseosporus NRRL 11379] gi|291445751|ref|ZP_06585141.1| ferredoxin-NADP+ reductase [Streptomyces roseosporus NRRL 15998] gi|291348698|gb|EFE75602.1| ferredoxin-NADP+ reductase [Streptomyces roseosporus NRRL 15998] Length = 556 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 30/92 (32%), Positives = 37/92 (40%), Gaps = 10/92 (10%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C C A+CP I R T ID CI CG C +ACPVDAI Sbjct: 7 QTCCNDATCVAVCPVNCIHPTPEERA---FGSTEMLHIDPRACIDCGACADACPVDAIF- 62 Query: 121 GPNFEFATETRQ-----ELYYDKERLLNNGDR 147 P + R+ YY+ E L+ GD Sbjct: 63 -PVDSLSAGQREYADINAAYYEGEEPLSVGDE 93 >gi|218264316|ref|ZP_03478173.1| hypothetical protein PRABACTJOHN_03864 [Parabacteroides johnsonii DSM 18315] gi|218222117|gb|EEC94767.1| hypothetical protein PRABACTJOHN_03864 [Parabacteroides johnsonii DSM 18315] Length = 481 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 27/68 (39%), Gaps = 6/68 (8%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQEA 112 + CI+C C CP AI P + ID KCIYCG C A Sbjct: 148 DHDTCISCGKCHQNCPYHAIVYIPIPCEEVCPVKAISKDEYGVEHIDESKCIYCGKCVNA 207 Query: 113 CPVDAIVE 120 CP AI E Sbjct: 208 CPFGAIFE 215 Score = 38.9 bits (89), Expect = 0.25, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 29/98 (29%), Gaps = 12/98 (12%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------------ITIESGPR 85 E S + C+ + C + + P+ Sbjct: 75 DELTPLSEYAKQALLRSENKKENLMCVVDEACSSCVQVNYEITNLCRGCVARSCYMNCPK 134 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 ++ + +ID CI CG C + CP AIV P Sbjct: 135 DAIRFKKNGQAEIDHDTCISCGKCHQNCPYHAIVYIPI 172 >gi|126465150|ref|YP_001040259.1| dihydroorotate dehydrogenase family protein [Staphylothermus marinus F1] gi|126013973|gb|ABN69351.1| dihydroorotate dehydrogenase family protein [Staphylothermus marinus F1] Length = 406 Score = 57.4 bits (137), Expect = 6e-07, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 6/67 (8%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++CI C CE +C A+ + ++ C CGLC CP AI Sbjct: 346 DPKKCIGCGFCEQVCDYNAVKVVPNEEGK------RIAQVNYDLCYGCGLCTSVCPTRAI 399 Query: 119 VEGPNFE 125 + Sbjct: 400 HFEEELD 406 Score = 37.4 bits (85), Expect = 0.68, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 18/41 (43%) Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 + +D KCI CG C++ C +A+ PN E Sbjct: 332 KPEPRRVWAKPPVVDPKKCIGCGFCEQVCDYNAVKVVPNEE 372 >gi|150016647|ref|YP_001308901.1| hydrogenase, Fe-only [Clostridium beijerinckii NCIMB 8052] gi|149903112|gb|ABR33945.1| hydrogenase, Fe-only [Clostridium beijerinckii NCIMB 8052] Length = 644 Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 10/63 (15%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++CI C C+ CP I E + ID +C +CG C ACPVDAI Sbjct: 220 KKCIGCGACKRACPVDCINGELKKKHE----------IDYNRCTHCGACVSACPVDAISA 269 Query: 121 GPN 123 G N Sbjct: 270 GDN 272 >gi|237725194|ref|ZP_04555675.1| conserved hypothetical protein [Bacteroides sp. D4] gi|265754284|ref|ZP_06089473.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|229436460|gb|EEO46537.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] gi|263234993|gb|EEZ20548.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 487 Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 6/70 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQ 110 + CI+C +C CP AI P + ID KCIYCG C Sbjct: 150 WIDHDTCISCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDENKCIYCGKCM 209 Query: 111 EACPVDAIVE 120 ACP AI E Sbjct: 210 NACPFGAIFE 219 Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIACK--LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + + C C C+ CP A+ + + ID CI CG+C + Sbjct: 114 QINYEITDLCRGCTARSCQYNCPKGAVHVHADTGKAW---------IDHDTCISCGICHK 164 Query: 112 ACPVDAIVEGP 122 +CP AIV P Sbjct: 165 SCPYHAIVYIP 175 >gi|254884686|ref|ZP_05257396.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|254837479|gb|EET17788.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] Length = 488 Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 6/70 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQ 110 + CI+C +C CP AI P + ID KCIYCG C Sbjct: 150 WIDHDTCISCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDENKCIYCGKCM 209 Query: 111 EACPVDAIVE 120 ACP AI E Sbjct: 210 NACPFGAIFE 219 Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIACK--LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + + C C C+ CP A+ + + ID CI CG+C + Sbjct: 114 QINYEITDLCRGCTARSCQYNCPKGAVHVHADTGKAW---------IDHDTCISCGICHK 164 Query: 112 ACPVDAIVEGP 122 +CP AIV P Sbjct: 165 SCPYHAIVYIP 175 >gi|237709652|ref|ZP_04540133.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|229456288|gb|EEO62009.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 487 Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 6/70 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQ 110 + CI+C +C CP AI P + ID KCIYCG C Sbjct: 150 WIDHDTCISCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDENKCIYCGKCM 209 Query: 111 EACPVDAIVE 120 ACP AI E Sbjct: 210 NACPFGAIFE 219 Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIACK--LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + + C C C+ CP A+ + + ID CI CG+C + Sbjct: 114 QINYEITDLCRGCTARSCQYNCPKGAVHVHADTGKAW---------IDHDTCISCGICHK 164 Query: 112 ACPVDAIVEGP 122 +CP AIV P Sbjct: 165 SCPYHAIVYIP 175 >gi|145592049|ref|YP_001154051.1| thiamine pyrophosphate binding domain-containing protein [Pyrobaculum arsenaticum DSM 13514] gi|145283817|gb|ABP51399.1| thiamine pyrophosphate enzyme domain protein TPP-binding [Pyrobaculum arsenaticum DSM 13514] Length = 604 Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 10/68 (14%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 A+ +Y E+CI C +C + AI + ID C+ CG+C Sbjct: 531 VAIPKYKVEPEKCIGCGICYNLLKCSAIQARPDRKA----------YIDPALCVGCGMCA 580 Query: 111 EACPVDAI 118 E CPVDAI Sbjct: 581 EVCPVDAI 588 >gi|294776604|ref|ZP_06742073.1| 4Fe-4S binding domain protein [Bacteroides vulgatus PC510] gi|319642355|ref|ZP_07997010.1| hydrogenase [Bacteroides sp. 3_1_40A] gi|294449519|gb|EFG18050.1| 4Fe-4S binding domain protein [Bacteroides vulgatus PC510] gi|317386015|gb|EFV66939.1| hydrogenase [Bacteroides sp. 3_1_40A] Length = 481 Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 28/70 (40%), Gaps = 6/70 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQ 110 + CI+C +C CP AI P + ID KCIYCG C Sbjct: 143 WIDHDTCISCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDENKCIYCGKCM 202 Query: 111 EACPVDAIVE 120 ACP AI E Sbjct: 203 NACPFGAIFE 212 Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIACK--LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + + C C C+ CP A+ + + ID CI CG+C + Sbjct: 107 QINYEITDLCRGCTARSCQYNCPKGAVHVHADTGKAW---------IDHDTCISCGICHK 157 Query: 112 ACPVDAIVEGP 122 +CP AIV P Sbjct: 158 SCPYHAIVYIP 168 >gi|309390313|gb|ADO78193.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Halanaerobium praevalens DSM 2228] Length = 1178 Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 42/141 (29%), Gaps = 26/141 (18%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPR 85 S + A+ + CI C C CP A Sbjct: 669 PPGLSQYEKRGIAINVPDWKIDTCIQCNQCSLACPHAVIRPFLLNEEEAANAPEGFETLD 728 Query: 86 CHDGTRRTVRYDID--MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD------ 137 + Y I C CG+C E CPVDA+ E A + Y Sbjct: 729 ARGKQLEGLEYKIQVSPYDCTGCGVCAEVCPVDALEMTSFAEMAEKEADNWEYAVNEVSV 788 Query: 138 KERLLNN----GDRWESEIVR 154 K+ L++ G +++ ++ Sbjct: 789 KDDLMDPVNIKGSQFQEPLLE 809 >gi|302389032|ref|YP_003824853.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Thermosediminibacter oceani DSM 16646] gi|302199660|gb|ADL07230.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Thermosediminibacter oceani DSM 16646] Length = 315 Score = 57.4 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 37/108 (34%), Gaps = 16/108 (14%) Query: 22 LCLRYFFKAKT---TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78 + K T+ P E+ G ++R E C C C CP I Sbjct: 219 TTAKELLKQMPFAGTVPSPQEENEGMVT--GNWRMKRPILNTEACTQCWTCWIYCPDTCI 276 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 + DG ++Y C CGLC CP AI E P +F Sbjct: 277 -----KKGEDGPLFNLKY------CKGCGLCAAVCPTGAITEVPELDF 313 >gi|171184660|ref|YP_001793579.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Thermoproteus neutrophilus V24Sta] gi|170933872|gb|ACB39133.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Thermoproteus neutrophilus V24Sta] Length = 103 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 28/75 (37%), Positives = 34/75 (45%), Gaps = 1/75 (1%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G LR N ERC+ C+LC CP I + G G VRY+I+ C CG+ Sbjct: 28 GWRTLRPVIND-ERCVRCQLCWLYCPEGTIVEKKGVFKVGGRTYDVRYEINYDYCKGCGI 86 Query: 109 CQEACPVDAIVEGPN 123 C CP AI P Sbjct: 87 CANECPTKAIEMVPE 101 >gi|153868837|ref|ZP_01998574.1| protein involved in sulfur oxidation dsrL [Beggiatoa sp. PS] gi|152074580|gb|EDN71420.1| protein involved in sulfur oxidation dsrL [Beggiatoa sp. PS] Length = 662 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 4/60 (6%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C C CP +A+ G Y+ +CI C +C E CP I G Sbjct: 604 MCFECDNCVMYCPQEAVKRTPKKDATTGRYVYTDYN----RCIGCHICAEVCPTGYINMG 659 >gi|226364584|ref|YP_002782366.1| ferredoxin--NADP(+) reductase [Rhodococcus opacus B4] gi|226243073|dbj|BAH53421.1| putative ferredoxin--NADP(+) reductase [Rhodococcus opacus B4] Length = 559 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 29/81 (35%), Gaps = 6/81 (7%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C C +CP I + T ID CI CG C E CPV+AI Sbjct: 7 QPCCNDASCVDVCPVNCIHPTPDEKP---FATTEMLYIDPDTCIDCGACVEECPVEAIYA 63 Query: 121 GPNFEFATE---TRQELYYDK 138 + + E YY K Sbjct: 64 ENDLDEVDEPYLDINAQYYTK 84 >gi|111017434|ref|YP_700406.1| ferredoxin--NADP(+) reductase [Rhodococcus jostii RHA1] gi|110816964|gb|ABG92248.1| ferredoxin--NADP(+) reductase [Rhodococcus jostii RHA1] Length = 542 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 28/62 (45%), Gaps = 3/62 (4%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C C A+CP I R +RT ID CI CG C + CPVDAIV Sbjct: 7 QNCCNDATCVAVCPVDCIHPTPAERE---YQRTEMLYIDPGACIDCGACADVCPVDAIVP 63 Query: 121 GP 122 G Sbjct: 64 GD 65 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 18/65 (27%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + +P R CI C C +CP AI P R + Sbjct: 19 CPVDCIHPTPAEREYQRTEMLYIDPGACIDCGACADVCPVDAIVPGDAPAPDIDRYREIN 78 Query: 96 YDIDM 100 + Sbjct: 79 AEYFQ 83 >gi|308274678|emb|CBX31277.1| hypothetical protein N47_E47890 [uncultured Desulfobacterium sp.] Length = 1155 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 23/85 (27%), Gaps = 7/85 (8%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR-------YDI 98 +F+ C C C +C + + Y I Sbjct: 101 QFKVTIRQHLNWVDPNLCTGCGYCADVCQVEIPDKFNENIGTHKAVYLPVPHAIPNPYII 160 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPN 123 D C CG C + CP AI + Sbjct: 161 DFTSCTRCGACIKVCPTGAINLPQD 185 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 9/59 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 C C+ C CP A +++ R I+ C CG C CP A Sbjct: 1086 HHSICALCEQCIDACPYGARSVDYD---------NERILINPGICQGCGTCAAVCPNSA 1135 >gi|118580575|ref|YP_901825.1| glutamate synthase alpha subunit [Pelobacter propionicus DSM 2379] gi|118503285|gb|ABK99767.1| glutamate synthase (NADPH) GltB3 subunit [Pelobacter propionicus DSM 2379] Length = 771 Score = 57.0 bits (136), Expect = 8e-07, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 32/95 (33%), Gaps = 5/95 (5%) Query: 29 KAKTTINYPFEKGS---TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 K P E+ S P+ RG LR + RCI+C C E Sbjct: 674 KKP--EMIPQERLSRELFMPQNRGRFRLRDAKDEVHRCISCGTCRDCSMCLETCPEGAIV 731 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + +V Y D CI CG+C CP Sbjct: 732 RTEKEDGSVEYTSDERYCIGCGICASICPCGVWAM 766 >gi|148264692|ref|YP_001231398.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Geobacter uraniireducens Rf4] gi|146398192|gb|ABQ26825.1| ech hydrogenase subunit F [Geobacter uraniireducens Rf4] Length = 124 Score = 57.0 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 43/117 (36%), Gaps = 14/117 (11%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + T+ YP + + RG N +RCI C +C CP Sbjct: 3 IFTMTKTVTKNLVTGPATLMYPQRERIFTAITRGRIE-----NAIDRCIFCGMCGRRCPT 57 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 AIT+ + + ID +KC C LC E CPV + G ++ RQ Sbjct: 58 YAITVTKESKA---------WQIDRLKCCICNLCVEVCPVKCLSTGNHYSQPVVERQ 105 >gi|293392056|ref|ZP_06636390.1| hydrogenase-4 component H [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952590|gb|EFE02709.1| hydrogenase-4 component H [Aggregatibacter actinomycetemcomitans D7S-1] Length = 168 Score = 57.0 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 35/65 (53%), Gaps = 5/65 (7%) Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 CPA A+T+ + P D + + + +CI+CG C+E CP AI +FE + Sbjct: 1 MACPANALTMRTDPVTGD-----RTWSLFLGRCIFCGRCEEVCPTKAIRLTQDFELSVTN 55 Query: 131 RQELY 135 +Q+LY Sbjct: 56 KQDLY 60 >gi|182415927|ref|YP_001820993.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Opitutus terrae PB90-1] gi|177843141|gb|ACB77393.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Opitutus terrae PB90-1] Length = 104 Score = 57.0 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 35/97 (36%), Gaps = 14/97 (14%) Query: 28 FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH 87 T YPFE P RG+ C C +C CP +AI + Sbjct: 7 VSKPVTCRYPFEPRVPVPGSRGQLEF-----DPTACTYCTVCAKKCPTRAIVV------- 54 Query: 88 DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 R + ID + CI CG C E+CP + + Sbjct: 55 --KRAAKHWTIDRLLCISCGYCVESCPKHCLELTTDH 89 >gi|169334180|ref|ZP_02861373.1| hypothetical protein ANASTE_00576 [Anaerofustis stercorihominis DSM 17244] gi|169258897|gb|EDS72863.1| hypothetical protein ANASTE_00576 [Anaerofustis stercorihominis DSM 17244] Length = 1170 Score = 57.0 bits (136), Expect = 9e-07, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 26/82 (31%), Gaps = 16/82 (19%) Query: 58 NGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTR-----------RTVRYDIDMI 101 +CI C C +CP I E +G R + Sbjct: 684 WDANKCIQCNQCSYVCPHATIRPFLLDDEEKKNAPEGFETLEAKGPGVEGYNFRIQVSSY 743 Query: 102 KCIYCGLCQEACPVDAIVEGPN 123 C+ CG C E CP +AI P Sbjct: 744 DCLGCGQCVEICPTNAISMTPI 765 >gi|226361209|ref|YP_002778987.1| ferredoxin--NADP(+) reductase [Rhodococcus opacus B4] gi|226239694|dbj|BAH50042.1| putative ferredoxin--NADP(+) reductase [Rhodococcus opacus B4] Length = 541 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 28/62 (45%), Gaps = 3/62 (4%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C C A+CP I R +RT ID CI CG C + CPVDAIV Sbjct: 7 QNCCNDATCVAVCPVDCIHPTPAERE---YKRTEMLYIDPGACIDCGACSDVCPVDAIVP 63 Query: 121 GP 122 G Sbjct: 64 GD 65 >gi|111022079|ref|YP_705051.1| ferredoxin--NADP(+) reductase, C-terminal [Rhodococcus jostii RHA1] gi|110821609|gb|ABG96893.1| possible ferredoxin--NADP(+) reductase, C-terminal [Rhodococcus jostii RHA1] Length = 559 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 29/81 (35%), Gaps = 6/81 (7%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C C +CP I + T ID CI CG C E CPV+AI Sbjct: 7 QPCCNDASCVDVCPVNCIHPTPDEKP---FATTEMLYIDPDTCIDCGACVEECPVEAIYA 63 Query: 121 GPNFEFATE---TRQELYYDK 138 + + E YY K Sbjct: 64 ENDLDEVDEPYLDINAQYYTK 84 >gi|302871901|ref|YP_003840537.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor obsidiansis OB47] gi|302574760|gb|ADL42551.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor obsidiansis OB47] Length = 598 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 15/96 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 LRY F+ + + ++ AL R ++ C C +C CPA AIT + Sbjct: 514 TLRY-FRDEYEAHVKEKRCPAGAC----KALLRIVIDKDLCKGCGICAKNCPANAITGQI 568 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ID KCI CG+C E CP AI Sbjct: 569 KKP----------FEIDQSKCIKCGVCIEKCPFKAI 594 >gi|298528245|ref|ZP_07015649.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfonatronospira thiodismutans ASO3-1] gi|298511897|gb|EFI35799.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfonatronospira thiodismutans ASO3-1] Length = 203 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 36/85 (42%), Gaps = 3/85 (3%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E S R +L RY E C C C+ +C A+ E+ G ++I Sbjct: 115 EHVDRSCPSRECKSLVRYEIVPELCTMCGECKKVCRYNAVLGETKKPYFTGY---QPFEI 171 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPN 123 + +C CG C + CP AIV G N Sbjct: 172 RLKRCTGCGECVDVCPEGAIVVGSN 196 >gi|312127640|ref|YP_003992514.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor hydrothermalis 108] gi|311777659|gb|ADQ07145.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor hydrothermalis 108] Length = 598 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 30/96 (31%), Positives = 41/96 (42%), Gaps = 15/96 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 LRY F+ + + ++ AL R +E C C +C CPA AIT + Sbjct: 514 TLRY-FRDEYEAHVKEKRCPAGAC----KALLRIVIDKELCKGCGICAKNCPANAITGQI 568 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ID KCI CG+C E CP AI Sbjct: 569 KKP----------FEIDQSKCIKCGVCIEKCPFKAI 594 >gi|146296868|ref|YP_001180639.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410444|gb|ABP67448.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 598 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 15/96 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 LRY F+ + + ++ AL R ++ C C +C CPA AIT + Sbjct: 514 TLRY-FRDEYEAHVKEKRCPAGAC----KALLRIVIDKDLCKGCGICAKNCPANAITGQI 568 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ID KCI CG+C E CP AI Sbjct: 569 KKP----------FEIDQEKCIKCGVCIEKCPFKAI 594 >gi|325288319|ref|YP_004264500.1| NADH dehydrogenase (quinone) [Syntrophobotulus glycolicus DSM 8271] gi|324963720|gb|ADY54499.1| NADH dehydrogenase (quinone) [Syntrophobotulus glycolicus DSM 8271] Length = 247 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 42/111 (37%), Gaps = 11/111 (9%) Query: 25 RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84 + T +Y E +G + ++ C C C CP AI +E+ Sbjct: 7 KSLMTGIVTTDYSGEGAIIPEHDQGFPIRQ-----DKFCQQCGKCAEACPQAAIKLEAAA 61 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 + + ID+ KCI CG C E CPV A+ G E A + L Sbjct: 62 ------WKGFSWKIDLKKCICCGFCIEECPVQALSRGKEDEQAEISLDSLL 106 >gi|222529289|ref|YP_002573171.1| NADH dehydrogenase [Caldicellulosiruptor bescii DSM 6725] gi|312622465|ref|YP_004024078.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor kronotskyensis 2002] gi|222456136|gb|ACM60398.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor bescii DSM 6725] gi|312202932|gb|ADQ46259.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor kronotskyensis 2002] Length = 598 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 15/96 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 LRY F+ + + ++ AL R ++ C C +C CPA AIT + Sbjct: 514 TLRY-FRDEYEAHVKEKRCPAGAC----KALLRIVIDKDLCKGCGICAKNCPANAITGQI 568 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ID KCI CG+C E CP AI Sbjct: 569 KKP----------FEIDQSKCIKCGVCIEKCPFKAI 594 >gi|295101854|emb|CBK99399.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [Faecalibacterium prausnitzii L2-6] Length = 1174 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 28/99 (28%), Gaps = 15/99 (15%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ--------------AITIESGP 84 E+G+++ RG +C+ C C +C A Sbjct: 667 EQGASAYEKRGTAVNVPEW-DAAKCVGCNQCAFVCSHATIRPFQLTADELAAAPAQTKSR 725 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + + C+ CG C CP AI P Sbjct: 726 DNKPANEYKFVMAVSPLDCMGCGECVTVCPTKAIQMVPQ 764 >gi|242281199|ref|YP_002993328.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio salexigens DSM 2638] gi|242124093|gb|ACS81789.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio salexigens DSM 2638] Length = 428 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 36/97 (37%), Gaps = 15/97 (15%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C C CP AIT+ + +I+ C+ CG+C CP A+ Sbjct: 293 DCNGCGKCARACPIDAITMHKE-NVPGAEKPRRFAEINKNICLGCGVCALKCPTGALQM- 350 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158 + R++ E D +E I++++ Sbjct: 351 -------DKREQRVIHPE------DSFERVILQSLER 374 Score = 38.2 bits (87), Expect = 0.41, Method: Composition-based stats. Identities = 11/26 (42%), Positives = 14/26 (53%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPN 123 I++ C CG C ACP+DAI Sbjct: 289 IELADCNGCGKCARACPIDAITMHKE 314 >gi|312135114|ref|YP_004002452.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor owensensis OL] gi|311775165|gb|ADQ04652.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor owensensis OL] Length = 598 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 41/96 (42%), Gaps = 15/96 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 LRY F+ + + ++ AL R ++ C C +C CPA AIT + Sbjct: 514 TLRY-FRDEYEAHVKEKRCPAGAC----KALLRIVIDKDLCKGCGICAKNCPANAITGQI 568 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ID KCI CG+C E CP AI Sbjct: 569 KKP----------FEIDQSKCIKCGVCIEKCPFKAI 594 >gi|312876005|ref|ZP_07735994.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor lactoaceticus 6A] gi|311797203|gb|EFR13543.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor lactoaceticus 6A] Length = 598 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 30/96 (31%), Positives = 41/96 (42%), Gaps = 15/96 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 LRY F+ + + ++ AL R +E C C +C CPA AIT + Sbjct: 514 TLRY-FRDEYEAHVKEKRCPAGAC----KALLRIVIDKELCKGCGICAKNCPANAITGQI 568 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ID KCI CG+C E CP AI Sbjct: 569 KKP----------FEIDQSKCIKCGVCIEKCPFKAI 594 >gi|312793480|ref|YP_004026403.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180620|gb|ADQ40790.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor kristjanssonii 177R1B] Length = 598 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 30/96 (31%), Positives = 41/96 (42%), Gaps = 15/96 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 LRY F+ + + ++ AL R +E C C +C CPA AIT + Sbjct: 514 TLRY-FRDEYEAHVKEKRCPAGAC----KALLRIVIDKELCKGCGICAKNCPANAITGQI 568 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ID KCI CG+C E CP AI Sbjct: 569 KKP----------FEIDQSKCIKCGVCIEKCPFKAI 594 >gi|329964944|ref|ZP_08301952.1| 4Fe-4S binding domain protein [Bacteroides fluxus YIT 12057] gi|328524585|gb|EGF51653.1| 4Fe-4S binding domain protein [Bacteroides fluxus YIT 12057] Length = 486 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110 + CI+C +C CP AI P + + D ID KCIYCG C Sbjct: 148 WIDHDACISCGICHKSCPYHAIVYIPVPCEEACPVKAISKDAKGIEHIDENKCIYCGKCL 207 Query: 111 EACPVDAIVE 120 ACP AI E Sbjct: 208 NACPFGAIFE 217 Score = 37.8 bits (86), Expect = 0.53, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 27/80 (33%), Gaps = 6/80 (7%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY------DIDMIK 102 G +E C AC + + ++ V ID Sbjct: 94 GTPKDNIMCVIDEACSACVQINYEITNLCRGCTARSCQTNCPKKAVHVKESGQAWIDHDA 153 Query: 103 CIYCGLCQEACPVDAIVEGP 122 CI CG+C ++CP AIV P Sbjct: 154 CISCGICHKSCPYHAIVYIP 173 >gi|224535649|ref|ZP_03676188.1| hypothetical protein BACCELL_00513 [Bacteroides cellulosilyticus DSM 14838] gi|224522722|gb|EEF91827.1| hypothetical protein BACCELL_00513 [Bacteroides cellulosilyticus DSM 14838] Length = 486 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110 + CI+C +C CP AI P + + D ID KCIYCG C Sbjct: 148 WIDHDECISCGICHKSCPYHAIVYIPVPCEEACPVKAISKDKKGIEHIDESKCIYCGKCL 207 Query: 111 EACPVDAIVE 120 ACP AI E Sbjct: 208 NACPFGAIFE 217 Score = 37.8 bits (86), Expect = 0.49, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 28/80 (35%), Gaps = 6/80 (7%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY------DIDMIK 102 G +E C AC + + ++ V ID + Sbjct: 94 GTPKDNIMCVIDEACSACVQINYEITNLCRGCTARSCQTNCPKKAVHVKESGQAWIDHDE 153 Query: 103 CIYCGLCQEACPVDAIVEGP 122 CI CG+C ++CP AIV P Sbjct: 154 CISCGICHKSCPYHAIVYIP 173 >gi|270297051|ref|ZP_06203250.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270273038|gb|EFA18901.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 486 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110 + CI+C +C CP AI P + + D ID KCIYCG C Sbjct: 148 WIDHDACISCGICHKSCPYHAIVYIPVPCEEACPVKAISKDEKGIEHIDESKCIYCGKCL 207 Query: 111 EACPVDAIVE 120 ACP AI E Sbjct: 208 NACPFGAIFE 217 Score = 37.8 bits (86), Expect = 0.47, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 27/80 (33%), Gaps = 6/80 (7%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY------DIDMIK 102 G +E C AC + + ++ V ID Sbjct: 94 GRPKDNIMCVIDEACSACVQINYEITNLCRGCTARSCQVNCPKKAVHVKESGQAWIDHDA 153 Query: 103 CIYCGLCQEACPVDAIVEGP 122 CI CG+C ++CP AIV P Sbjct: 154 CISCGICHKSCPYHAIVYIP 173 >gi|167037865|ref|YP_001665443.1| NADH dehydrogenase (quinone) [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116282|ref|YP_004186441.1| NADH dehydrogenase (quinone) [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856699|gb|ABY95107.1| NADH dehydrogenase (quinone) [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929373|gb|ADV80058.1| NADH dehydrogenase (quinone) [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 596 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 15/97 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 +RY F+ + + +K AL R+ ++C C +C CP AI+ Sbjct: 513 TIRY-FRDEYEAHIKEKKCPAGVC----QALLRFYIDPDKCKGCGICAKNCPVNAISG-- 565 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + Y ID KCI CG C E CP AI Sbjct: 566 --------KPRQPYVIDQDKCIKCGTCIEKCPFGAIY 594 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 8/62 (12%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 I+ + +R+ ID KC CG+C + CPV+AI + + RQ D+ Sbjct: 524 HIKEKKCPAGVCQALLRFYIDPDKCKGCGICAKNCPVNAI--------SGKPRQPYVIDQ 575 Query: 139 ER 140 ++ Sbjct: 576 DK 577 >gi|317133525|ref|YP_004092839.1| NADH dehydrogenase (quinone) [Ethanoligenens harbinense YUAN-3] gi|315471504|gb|ADU28108.1| NADH dehydrogenase (quinone) [Ethanoligenens harbinense YUAN-3] Length = 624 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 38/98 (38%), Gaps = 15/98 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 L+Y F+ + + +K T A+ Y E C C C ICP AI+ E Sbjct: 541 TLKY-FRDEYIAHVRDKKCPTHTC----KAMSIYAIDPEACKGCSKCSRICPVGAISGE- 594 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + ID KCI CG C CP AI E Sbjct: 595 ---------IRHPFTIDTQKCIKCGACIANCPFHAIKE 623 >gi|289578042|ref|YP_003476669.1| NADH dehydrogenase (quinone) [Thermoanaerobacter italicus Ab9] gi|297544313|ref|YP_003676615.1| NADH dehydrogenase (quinone) [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289527755|gb|ADD02107.1| NADH dehydrogenase (quinone) [Thermoanaerobacter italicus Ab9] gi|296842088|gb|ADH60604.1| NADH dehydrogenase (quinone) [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 596 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 15/97 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 +RY F+ + + +K AL R+ ++C C +C CP AI+ Sbjct: 513 TIRY-FRDEYEAHIKEKKCPAGVC----QALLRFYIDPDKCKGCGICAKNCPVNAISG-- 565 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + Y ID KCI CG C E CP AI Sbjct: 566 --------KPRQPYVIDQDKCIKCGTCIEKCPFGAIY 594 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 8/62 (12%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 I+ + +R+ ID KC CG+C + CPV+AI + + RQ D+ Sbjct: 524 HIKEKKCPAGVCQALLRFYIDPDKCKGCGICAKNCPVNAI--------SGKPRQPYVIDQ 575 Query: 139 ER 140 ++ Sbjct: 576 DK 577 >gi|189467136|ref|ZP_03015921.1| hypothetical protein BACINT_03520 [Bacteroides intestinalis DSM 17393] gi|189435400|gb|EDV04385.1| hypothetical protein BACINT_03520 [Bacteroides intestinalis DSM 17393] Length = 486 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110 + CI+C +C CP AI P + + D ID KCIYCG C Sbjct: 148 WIDHDECISCGICHKSCPYHAIVYIPVPCEEACPVKAISKDKKGIEHIDESKCIYCGKCL 207 Query: 111 EACPVDAIVE 120 ACP AI E Sbjct: 208 NACPFGAIFE 217 Score = 37.8 bits (86), Expect = 0.51, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 28/80 (35%), Gaps = 6/80 (7%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY------DIDMIK 102 G +E C AC + + ++ V ID + Sbjct: 94 GTPKDNIMCVIDEACSACVQINYEITNLCRGCTARSCQTNCPKKAVHVKESGQAWIDHDE 153 Query: 103 CIYCGLCQEACPVDAIVEGP 122 CI CG+C ++CP AIV P Sbjct: 154 CISCGICHKSCPYHAIVYIP 173 >gi|126459280|ref|YP_001055558.1| pyruvate ferredoxin oxidoreductase, delta subunit [Pyrobaculum calidifontis JCM 11548] gi|126249001|gb|ABO08092.1| pyruvate ferredoxin oxidoreductase, delta subunit [Pyrobaculum calidifontis JCM 11548] Length = 103 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 29/65 (44%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++RCI C+LC CP I G V+Y+I+ C CG+C CP AI Sbjct: 37 HDDRCIRCQLCWLYCPEGTIVEVKGVFKVGNRTYDVKYEINYDYCKGCGICANECPTKAI 96 Query: 119 VEGPN 123 P Sbjct: 97 EMVPE 101 >gi|187934487|ref|YP_001886193.1| periplasmic [Fe] hydrogenase 1 [Clostridium botulinum B str. Eklund 17B] gi|187722640|gb|ACD23861.1| periplasmic [Fe] hydrogenase 1 [Clostridium botulinum B str. Eklund 17B] Length = 646 Score = 56.6 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 10/63 (15%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++CI C C+ CP I E + ++ID KC +CG C ACPVDAI Sbjct: 222 KKCIGCGSCKRACPVDCIDGELKKQ----------HNIDYNKCTHCGACISACPVDAITA 271 Query: 121 GPN 123 G N Sbjct: 272 GNN 274 >gi|288575149|ref|ZP_06393506.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570890|gb|EFC92447.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 229 Score = 56.3 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 34/134 (25%), Positives = 48/134 (35%), Gaps = 35/134 (26%) Query: 24 LRYFFKAKTTINYP----------------------FEKGSTSPRFRGEHALRRYPNGEE 61 LR+ FK T YP E T RFRG+ E Sbjct: 10 LRHLFKKAFTNPYPVSHMPDDLTGVLEAASKGEIDLNEPVETWGRFRGKVG-----YDRE 64 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 +CI C +C +CPA AI + + +C +C C + CPVDA+ Sbjct: 65 KCIGCGMCMKVCPANAIERAPED--------PKKIIVHNDRCCFCAQCNDICPVDALTMT 116 Query: 122 PNFEFATETRQELY 135 +F +T R+ Sbjct: 117 CDFAISTYERKSNV 130 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 36/94 (38%), Gaps = 12/94 (12%) Query: 29 KAKTTINYPFEKGSTSPRFRGEHA--LRRYPNGEERCIACKLCEAICPAQAITIESGPRC 86 + + + KG A + Y EE C+ C +C CP AI Sbjct: 139 RKPFQSEWTYRKGEVPDEVEDPKAQPKKVYRVREEDCVGCTICAKACPVGAIEG------ 192 Query: 87 HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + ++ ID KC+ CG+C CP AI E Sbjct: 193 ----KVKEKHVIDPEKCVGCGVCASKCPKGAIEE 222 >gi|160888148|ref|ZP_02069151.1| hypothetical protein BACUNI_00556 [Bacteroides uniformis ATCC 8492] gi|317478948|ref|ZP_07938095.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 4_1_36] gi|156862283|gb|EDO55714.1| hypothetical protein BACUNI_00556 [Bacteroides uniformis ATCC 8492] gi|316904925|gb|EFV26732.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 4_1_36] Length = 486 Score = 56.3 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110 + CI+C +C CP AI P + + D ID KCIYCG C Sbjct: 148 WIDHDACISCGICHKSCPYHAIVYIPVPCEEACPVKAISKDEKGIEHIDESKCIYCGKCL 207 Query: 111 EACPVDAIVE 120 ACP AI E Sbjct: 208 NACPFGAIFE 217 Score = 37.8 bits (86), Expect = 0.51, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 27/80 (33%), Gaps = 6/80 (7%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY------DIDMIK 102 G +E C AC + + ++ V ID Sbjct: 94 GRPKDNIMCVIDEACSACVQINYEITNLCRGCTARSCQVNCPKKAVHVKESGQAWIDHDA 153 Query: 103 CIYCGLCQEACPVDAIVEGP 122 CI CG+C ++CP AIV P Sbjct: 154 CISCGICHKSCPYHAIVYIP 173 >gi|294786061|ref|ZP_06751346.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Fusobacterium sp. 3_1_27] gi|294486283|gb|EFG33648.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Fusobacterium sp. 3_1_27] Length = 1190 Score = 56.3 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 37/120 (30%), Gaps = 20/120 (16%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI----------------TIE 81 FE G+ + RG N ++CI C C +CP AI Sbjct: 679 FENGTAAFEKRGVAVNVPIWN-LDKCIECNQCAYVCPHAAIRAFLITEEEKTVSPVEFAT 737 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN---FEFATETRQELYYDK 138 T R + + C CG C CP A+ P E + + Y K Sbjct: 738 KKANGKGLEDLTYRIQVTPLDCTGCGSCANVCPAKALDMEPIAVALENHEDEKASYIYSK 797 >gi|148244923|ref|YP_001219617.1| putative glutamate synthase (NADPH) small subunit [Candidatus Vesicomyosocius okutanii HA] gi|146326750|dbj|BAF61893.1| intracellular sulfur oxidation protein DsrL [Candidatus Vesicomyosocius okutanii HA] Length = 654 Score = 56.3 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 4/59 (6%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C C CP A+ + G Y+ KCI C +C + CP I G Sbjct: 597 CFECDNCVMYCPQDAVFKVKKDKATLGRYVDTDYN----KCIGCHICADVCPTGYIQMG 651 >gi|319901972|ref|YP_004161700.1| hydrogenase large subunit domain protein [Bacteroides helcogenes P 36-108] gi|319417003|gb|ADV44114.1| hydrogenase large subunit domain protein [Bacteroides helcogenes P 36-108] Length = 486 Score = 56.3 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110 + CI+C +C CP AI P + + D ID KCIYCG C Sbjct: 148 WIDHDACISCGICHKSCPYHAIVYIPVPCEEACPVKAISKDEKGIEHIDESKCIYCGKCL 207 Query: 111 EACPVDAIVE 120 ACP AI E Sbjct: 208 NACPFGAIFE 217 Score = 37.4 bits (85), Expect = 0.60, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 28/80 (35%), Gaps = 6/80 (7%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY------DIDMIK 102 G+ +E C AC + + ++ V ID Sbjct: 94 GKPKENIMCVIDEACSACVQINYEITNLCRGCTARSCQVNCPKKAVHVKESGQAWIDHDA 153 Query: 103 CIYCGLCQEACPVDAIVEGP 122 CI CG+C ++CP AIV P Sbjct: 154 CISCGICHKSCPYHAIVYIP 173 >gi|237741100|ref|ZP_04571581.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. 4_1_13] gi|229430632|gb|EEO40844.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. 4_1_13] Length = 1190 Score = 56.3 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 37/120 (30%), Gaps = 20/120 (16%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI----------------TIE 81 FE G+ + RG N ++CI C C +CP AI Sbjct: 679 FENGTAAFEKRGVAVNVPIWN-LDKCIECNQCAYVCPHAAIRAFLITEEEKTVSPVEFAT 737 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN---FEFATETRQELYYDK 138 T R + + C CG C CP A+ P E + + Y K Sbjct: 738 KKANGKGLEDLTYRIQVTPLDCTGCGSCANVCPAKALDMEPIAVALENHEDEKASYIYSK 797 >gi|237808741|ref|YP_002893181.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Tolumonas auensis DSM 9187] gi|237501002|gb|ACQ93595.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Tolumonas auensis DSM 9187] Length = 1196 Score = 56.3 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 31/94 (32%), Gaps = 16/94 (17%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA-----ITIESGPRCHDGTRRTV 94 +TS + AL E+ CI C C +CP A + G + Sbjct: 678 PTATSQWEKRNIALEIPEWREDLCIQCGNCSFVCPHAAIRAKFYHKDLAENAPAGAKWAP 737 Query: 95 R-----------YDIDMIKCIYCGLCQEACPVDA 117 + C CGLC EACPV A Sbjct: 738 ISARGFPDTLYTLQVYPEDCTGCGLCVEACPVRA 771 Score = 36.2 bits (82), Expect = 1.3, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 21/84 (25%) Query: 85 RCHDGTRRTVRYDIDMIK---CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERL 141 +R + +I + CI CG C CP AI R + Y K+ L Sbjct: 680 ATSQWEKRNIALEIPEWREDLCIQCGNCSFVCPHAAI------------RAKF-YHKD-L 725 Query: 142 LNN---GDRWESEIVRNIVTDSPY 162 N G +W + I D+ Y Sbjct: 726 AENAPAGAKW-APISARGFPDTLY 748 >gi|256846239|ref|ZP_05551696.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Fusobacterium sp. 3_1_36A2] gi|256718008|gb|EEU31564.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Fusobacterium sp. 3_1_36A2] Length = 1190 Score = 56.3 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 37/120 (30%), Gaps = 20/120 (16%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI----------------TIE 81 FE G+ + RG N ++CI C C +CP AI Sbjct: 679 FENGTAAFEKRGVAVNVPIWN-LDKCIECNQCAYVCPHAAIRAFLITEEEKTVSPVEFAT 737 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN---FEFATETRQELYYDK 138 T R + + C CG C CP A+ P E + + Y K Sbjct: 738 KKANGKGLEDLTYRIQVTPLDCTGCGSCANVCPAKALDMEPIAVALENHEDEKASYIYSK 797 >gi|313113215|ref|ZP_07798836.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Faecalibacterium cf. prausnitzii KLE1255] gi|310624467|gb|EFQ07801.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Faecalibacterium cf. prausnitzii KLE1255] Length = 1181 Score = 56.3 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 28/99 (28%), Gaps = 15/99 (15%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ--------------AITIESGP 84 E+G+++ RG +C+ C C +C A Sbjct: 674 EQGASAYEKRGTAVNVPEW-DAAKCVGCNQCAFVCSHATIRPFQLTADELAAAPAQTKSR 732 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + + C+ CG C CP AI P Sbjct: 733 DNKPANEYKFVMAVSPLDCMGCGECVTVCPTKAITMVPQ 771 >gi|253700860|ref|YP_003022049.1| nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein [Geobacter sp. M21] gi|251775710|gb|ACT18291.1| nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein [Geobacter sp. M21] Length = 314 Score = 56.3 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 35/97 (36%), Gaps = 11/97 (11%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 + + FK PF+ ++ G CI+C LC C A+T+ Sbjct: 129 VTGHHKFKVGF-AGCPFDCPKSATNDVGLQGAVWPALDASGCISCGLCAKSCTEGALTMG 187 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + + D KCIYCG C + CP A Sbjct: 188 ADNKPVF----------DTAKCIYCGDCIKVCPTGAW 214 >gi|126437797|ref|YP_001073488.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [Mycobacterium sp. JLS] gi|126237597|gb|ABO00998.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Mycobacterium sp. JLS] Length = 1202 Score = 56.3 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 30/100 (30%), Gaps = 24/100 (24%) Query: 58 NGEERCIACKLCEAICPA--------QAITIESGPRCHDGTRRTVR--------YDIDMI 101 + CI C C +CP A ++ P + + Sbjct: 698 WDPDTCIQCGNCAFVCPHSVIRTKLYDADRLDGAPDAFASAPLNAVGLPESRYTLQVYVE 757 Query: 102 KCIYCGLCQEACP--------VDAIVEGPNFEFATETRQE 133 C CGLC EACP AI GP E R+ Sbjct: 758 DCTGCGLCVEACPAVAPGIPLTKAINLGPREPLVAEQREN 797 >gi|289522359|ref|ZP_06439213.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504195|gb|EFD25359.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 590 Score = 56.3 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 42/98 (42%), Gaps = 15/98 (15%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 L+YF + T + +K +L RY + CI C C ICP AI+ Sbjct: 506 TTLKYFREEYET-HVKDKKCPAKVC----PSLIRYTINTDLCIGCTRCARICPVGAISG- 559 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + ++ID KC+ CG C++ CPV AI Sbjct: 560 ---------KVKEPHEIDDAKCVRCGQCKQTCPVSAIF 588 >gi|225175927|ref|ZP_03729919.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1] gi|225168515|gb|EEG77317.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1] Length = 597 Score = 56.3 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 30/96 (31%), Positives = 40/96 (41%), Gaps = 15/96 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 L+YF K T + +K AL Y + C+ C +C CP AI E Sbjct: 514 TLQYFRKEYET-HIKDKKCPAGVC----QALFFYRIDDHICVGCGVCIKACPTDAIEGE- 567 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 R + +DM KCI CG C +ACP A+ Sbjct: 568 ---------RKQAHHLDMEKCIKCGGCVDACPFHAV 594 >gi|312144189|ref|YP_003995635.1| NADH dehydrogenase (quinone) [Halanaerobium sp. 'sapolanicus'] gi|311904840|gb|ADQ15281.1| NADH dehydrogenase (quinone) [Halanaerobium sp. 'sapolanicus'] Length = 600 Score = 56.3 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 10/69 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L Y E CI C C +CP AI+ E ++ID CI CG C+ Sbjct: 542 LSTYVITTEDCIGCGKCAKVCPVDAISGEIKG----------IFEIDEDICIACGACEPV 591 Query: 113 CPVDAIVEG 121 CPVDAI +G Sbjct: 592 CPVDAISQG 600 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 17/44 (38%) Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +A + Y I CI CG C + CPVDAI Sbjct: 524 YEAHIHKQNCPAGACQDLLSTYVITTEDCIGCGKCAKVCPVDAI 567 >gi|323701729|ref|ZP_08113400.1| Ferredoxin hydrogenase [Desulfotomaculum nigrificans DSM 574] gi|323533265|gb|EGB23133.1| Ferredoxin hydrogenase [Desulfotomaculum nigrificans DSM 574] Length = 467 Score = 56.3 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 6/71 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110 CI C C CP AI + P + V+ D ID +C+ CG+C Sbjct: 124 FIDHTVCIECGKCAKACPYHAIIEITRPCERACALKAVKIDDSRKAVIDSDRCVSCGMCV 183 Query: 111 EACPVDAIVEG 121 CP AI + Sbjct: 184 TVCPFGAITDT 194 Score = 42.0 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 5/63 (7%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTV-----RYDIDMIKCIYCGLCQEACPVDA 117 C C + + + + P + ++ + R ID CI CG C +ACP A Sbjct: 85 CNGCSVNKYVVTDACQNCVAHPCRNSCPKKAISVIQNRAFIDHTVCIECGKCAKACPYHA 144 Query: 118 IVE 120 I+E Sbjct: 145 IIE 147 >gi|34763801|ref|ZP_00144714.1| Pyruvate-flavodoxin oxidoreductase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27886425|gb|EAA23687.1| Pyruvate-flavodoxin oxidoreductase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 1190 Score = 56.3 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 37/120 (30%), Gaps = 20/120 (16%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI----------------TIE 81 FE G+ + RG N ++CI C C +CP AI Sbjct: 679 FENGTAALEKRGVAVNVPIWN-LDKCIECNQCAYVCPHAAIRAFLITEEEKTVSPVEFAT 737 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN---FEFATETRQELYYDK 138 T R + + C CG C CP A+ P E + + Y K Sbjct: 738 KKANGKGLEDLTYRIQVTPLDCTGCGSCANVCPAKALDMEPIAVALENHEDEKASYIYSK 797 >gi|254168050|ref|ZP_04874898.1| Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein [Aciduliprofundum boonei T469] gi|289595979|ref|YP_003482675.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Aciduliprofundum boonei T469] gi|197623093|gb|EDY35660.1| Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein [Aciduliprofundum boonei T469] gi|289533766|gb|ADD08113.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Aciduliprofundum boonei T469] Length = 629 Score = 56.3 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 3/71 (4%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R + Y +++C C +C AI + +G R I+ C CG Sbjct: 556 RKQGEWWVYEINQDKCTQCGICSDWLACVAIYKDKDDLAPNGK---PRVYINNALCDGCG 612 Query: 108 LCQEACPVDAI 118 +C CP +AI Sbjct: 613 VCATVCPFNAI 623 >gi|268323352|emb|CBH36940.1| hypothetical protein, Coenzyme F420 hydrogenase/dehydrogenase, beta subunit family [uncultured archaeon] Length = 467 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 42/130 (32%), Gaps = 14/130 (10%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA-ITI 80 + +R P E S R+ +ERCI C LC +C ++ Sbjct: 81 IGIRKMLLELLLARCPDEGRIQSLAMEYGIVKPRFVLEDERCILCGLCTRVCDELVGVSA 140 Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY--DK 138 + Y CI CG C CP +AI R++ Y Sbjct: 141 INVISRGVEREVGTPYRELSDDCIGCGSCALVCPTEAI-----------KREKNIYPTTA 189 Query: 139 ERLLNNGDRW 148 E ++ D++ Sbjct: 190 EDIVELEDKF 199 >gi|254168136|ref|ZP_04874983.1| Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein [Aciduliprofundum boonei T469] gi|197622902|gb|EDY35470.1| Thiamine pyrophosphate enzyme, C-terminal TPP binding domain protein [Aciduliprofundum boonei T469] Length = 629 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 3/71 (4%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R + Y +++C C +C AI + +G R I+ C CG Sbjct: 556 RKQGEWWVYEINQDKCTQCGICSDWLACVAIYKDKDDLAPNGK---PRVYINNALCDGCG 612 Query: 108 LCQEACPVDAI 118 +C CP +AI Sbjct: 613 VCATVCPFNAI 623 >gi|297526580|ref|YP_003668604.1| dihydroorotate dehydrogenase family protein [Staphylothermus hellenicus DSM 12710] gi|297255496|gb|ADI31705.1| dihydroorotate dehydrogenase family protein [Staphylothermus hellenicus DSM 12710] Length = 406 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 6/67 (8%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +CI C CE +C A+ + ++ C CGLC CP AI Sbjct: 346 DPRKCIGCGFCEQVCDYNAVKVLPSEEGK------RIAQVNHDLCYGCGLCTSVCPTRAI 399 Query: 119 VEGPNFE 125 + Sbjct: 400 HFEEELD 406 Score = 34.3 bits (77), Expect = 6.3, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 18/41 (43%) Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 + +D KCI CG C++ C +A+ P+ E Sbjct: 332 KPEPRRVWAKPPVVDPRKCIGCGFCEQVCDYNAVKVLPSEE 372 >gi|159905593|ref|YP_001549255.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanococcus maripaludis C6] gi|159887086|gb|ABX02023.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus maripaludis C6] Length = 393 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 43/113 (38%), Gaps = 14/113 (12%) Query: 9 SFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKL 68 S +L EFV + +F T RFR + + E+CI+C Sbjct: 4 SIWYLYEFVR------KKWFMRFTNAKSEKGSFIPPERFRKIPVI---FDLPEKCISCSA 54 Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C CP+ AITIE D CI CG C E+CP + + G Sbjct: 55 CAESCPSDAITIEYNEEFKKNMPVF-----DTGSCINCGNCVESCPTNVLEMG 102 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 34/104 (32%), Positives = 48/104 (46%), Gaps = 16/104 (15%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 L EE C++C CE CP AI+ S Y+ID+ C+ C C Sbjct: 116 PKLVNLVIDEEVCVSCGSCENACPVNAISHNSNG----------LYEIDVNLCVSCKNCV 165 Query: 111 EACPV-DAIVEGPNFEFAT--ETRQELYYDKERLLNNGDRWESE 151 EACPV +AIV + + E Q + +++ERL G +E E Sbjct: 166 EACPVENAIVTYDEPKLSEQIEIAQNIKFNRERL---GSDFEEE 206 Score = 40.1 bits (92), Expect = 0.10, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 8/64 (12%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 Y EE+CI C++C C P ++ T I+ C+ C +C+ CP Sbjct: 275 CYIIDEEKCIGCRICYRACNV--------PEAISISKETNLPYINPEYCVRCAICRNVCP 326 Query: 115 VDAI 118 VDA+ Sbjct: 327 VDAV 330 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 24/82 (29%), Gaps = 23/82 (28%) Query: 56 YPNGEERCIACKLCEAICPA-QAITIESGPR----------------------CHDGTRR 92 Y C++CK C CP AI P+ + Sbjct: 151 YEIDVNLCVSCKNCVEACPVENAIVTYDEPKLSEQIEIAQNIKFNRERLGSDFEEETDVI 210 Query: 93 TVRYDIDMIKCIYCGLCQEACP 114 + I CI CG C + CP Sbjct: 211 SEIPRIVPSLCIGCGNCVDVCP 232 Score = 35.8 bits (81), Expect = 1.7, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 22/57 (38%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 + A + + + R+ KCI C C E+CP DAI N EF Sbjct: 16 WFMRFTNAKSEKGSFIPPERFRKIPVIFDLPEKCISCSACAESCPSDAITIEYNEEF 72 >gi|91202589|emb|CAJ72228.1| similar to NAD(P) oxidoreductase, FAD-containing subunit [Candidatus Kuenenia stuttgartiensis] Length = 566 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 27/70 (38%), Gaps = 10/70 (14%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCH----------DGTRRTVRYDIDMIKCIYCGLCQ 110 E+CI C C +CP I++ S ID KCI CGLC Sbjct: 489 EKCILCGGCIDVCPYNCISMVSRENISLPDSLRNEENIPEEWDAAMIIDEEKCIRCGLCV 548 Query: 111 EACPVDAIVE 120 + CP AI Sbjct: 549 KRCPTRAITM 558 Score = 38.2 bits (87), Expect = 0.36, Method: Composition-based stats. Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%) Query: 95 RYDIDMI-KCIYCGLCQEACPVDAIVE 120 Y+I + KCI CG C + CP + I Sbjct: 482 HYNIFIDEKCILCGGCIDVCPYNCISM 508 >gi|251779851|ref|ZP_04822771.1| periplasmic [Fe] hydrogenase 1 [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084166|gb|EES50056.1| periplasmic [Fe] hydrogenase 1 [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 646 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 10/63 (15%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++CI C C+ CP I E + ++ID KC +CG C ACPVDAI Sbjct: 222 KKCIGCGSCKRACPVDCIDGELKKQ----------HNIDYNKCTHCGACISACPVDAITA 271 Query: 121 GPN 123 G N Sbjct: 272 GNN 274 >gi|188589939|ref|YP_001920992.1| periplasmic [Fe] hydrogenase 1 [Clostridium botulinum E3 str. Alaska E43] gi|188500220|gb|ACD53356.1| periplasmic [Fe] hydrogenase 1 [Clostridium botulinum E3 str. Alaska E43] Length = 646 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 10/63 (15%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++CI C C+ CP I E + ++ID KC +CG C ACPVDAI Sbjct: 222 KKCIGCGSCKRACPVDCIDGELKKQ----------HNIDYNKCTHCGACISACPVDAITA 271 Query: 121 GPN 123 G N Sbjct: 272 GNN 274 >gi|240145957|ref|ZP_04744558.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Roseburia intestinalis L1-82] gi|257201944|gb|EEV00229.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Roseburia intestinalis L1-82] gi|291535856|emb|CBL08968.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [Roseburia intestinalis M50/1] gi|291538352|emb|CBL11463.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [Roseburia intestinalis XB6B4] Length = 1181 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 33/108 (30%), Gaps = 16/108 (14%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES--------------- 82 FE G+ + RG N E+CI C C +C I Sbjct: 673 FEHGAAAYEKRGTAVTVPTWN-AEKCIQCNQCAFVCSHATIRPFMLSEDEVKAAPSNIKV 731 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 + + + C+ CG C CPV AI P A E Sbjct: 732 ADTKPKASEYKYTMSVSPLDCMGCGECITVCPVGAIEMVPQESQADEQ 779 >gi|3414805|gb|AAC31429.1| NADH dehydrogenase subunit 8 [Strigomonas oncopelti] Length = 145 Score = 56.3 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 41/107 (38%), Positives = 54/107 (50%), Gaps = 1/107 (0%) Query: 11 LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70 +F+ +F +FF+C F T+ P E S RG H R Y G ERCIAC+LC+ Sbjct: 1 MFVCDFCFSFFVCFYMCFLCCVTLVLPLELTIVSVCVRGNHYFRFYWCGLERCIACRLCD 60 Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 ICP+ I + G G R + + +CIYCG C CP DA Sbjct: 61 FICPSLDIDVRVG-WSLCGHRFSGVFGFSYRRCIYCGFCMHVCPTDA 106 >gi|254787399|ref|YP_003074828.1| glutamate synthase (NADPH) small subunit [Teredinibacter turnerae T7901] gi|237686554|gb|ACR13818.1| pyridine nucleotide-disulphide oxidoreductase family protein [Teredinibacter turnerae T7901] Length = 542 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 27/85 (31%), Gaps = 5/85 (5%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRY 96 E+ + G + + RC +C C A + + G Y Sbjct: 459 EERNKSFDEVLGGLSEQEVQYEASRCYSCGNCFECDGCYGACPEHAIIKLGSGRF----Y 514 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEG 121 ID +C CG C CP AI Sbjct: 515 QIDYSRCTGCGACTTQCPTAAIHMT 539 >gi|326391446|ref|ZP_08212982.1| NADH dehydrogenase (quinone) [Thermoanaerobacter ethanolicus JW 200] gi|325992525|gb|EGD50981.1| NADH dehydrogenase (quinone) [Thermoanaerobacter ethanolicus JW 200] Length = 596 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 15/97 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 +RY F+ + + ++ AL R+ ++C AC +C CP AI+ Sbjct: 513 TIRY-FRDEYEAHIKEKRCPAGVC----QALLRFYIDPDKCKACGICAKNCPVNAISG-- 565 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + V Y ID KCI CG C E CP AI Sbjct: 566 --------KPKVPYVIDQDKCIKCGTCIEKCPFGAIY 594 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 22/44 (50%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 I+ + +R+ ID KC CG+C + CPV+AI P Sbjct: 524 HIKEKRCPAGVCQALLRFYIDPDKCKACGICAKNCPVNAISGKP 567 >gi|307266695|ref|ZP_07548223.1| NADH dehydrogenase (quinone) [Thermoanaerobacter wiegelii Rt8.B1] gi|306918297|gb|EFN48543.1| NADH dehydrogenase (quinone) [Thermoanaerobacter wiegelii Rt8.B1] Length = 596 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 41/97 (42%), Gaps = 15/97 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 +RY F+ + + ++ AL R+ ++C AC +C CP AI+ Sbjct: 513 TIRY-FRDEYEAHIKEKRCPAGVC----QALLRFYIDPDKCKACGICAKNCPVNAISG-- 565 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + V Y ID KCI CG C E CP AI Sbjct: 566 --------KPKVPYVIDQDKCIKCGTCIEKCPFGAIY 594 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 22/44 (50%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 I+ + +R+ ID KC CG+C + CPV+AI P Sbjct: 524 HIKEKRCPAGVCQALLRFYIDPDKCKACGICAKNCPVNAISGKP 567 >gi|197118360|ref|YP_002138787.1| dissimilatory sulfite reductase (desulfoviridin) subunit [Geobacter bemidjiensis Bem] gi|197087720|gb|ACH38991.1| dissimilatory sulfite reductase (desulfoviridin) subunit, putative [Geobacter bemidjiensis Bem] Length = 314 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 36/97 (37%), Gaps = 11/97 (11%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 + + FK PF+ ++ G CI+C LC C A+T+ Sbjct: 129 VTGHHKFKVGF-AGCPFDCPKSATNDVGLQGAVWPALDASGCISCGLCAKSCTEGALTMG 187 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + + D KCIYCG C + CP DA Sbjct: 188 ADNKPVF----------DTAKCIYCGDCIKVCPTDAW 214 >gi|52549204|gb|AAU83053.1| uncharacterized anaerobic dehydrogenase [uncultured archaeon GZfos26D6] Length = 396 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 27/102 (26%), Positives = 34/102 (33%), Gaps = 2/102 (1%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA-ITIESGPRCHDGTRRT 93 P E S R+ +ERCI C LC +C ++ + Sbjct: 23 RCPEEGRIQSLALEYGVVKPRFVLEDERCILCGLCTRVCDELVGVSAINVISRGVEREVG 82 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAI-VEGPNFEFATETRQEL 134 Y CI CG C CP DAI E + E EL Sbjct: 83 TPYKELSDDCIGCGSCALVCPTDAIKREKNIYPTTAEDIAEL 124 >gi|118602834|ref|YP_904049.1| putative glutamate synthase (NADPH) small subunit [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567773|gb|ABL02578.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 654 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 4/59 (6%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C C CP A+ + G Y+ KCI C +C + CP I G Sbjct: 597 CFECDNCVMYCPQDAVFKVKKDKATLGRYVDTDYN----KCIGCHICADVCPTGYIQMG 651 >gi|20092967|ref|NP_619042.1| formylmethanofuran dehydrogenase, subunit F [Methanosarcina acetivorans C2A] gi|19918282|gb|AAM07522.1| formylmethanofuran dehydrogenase, subunit F [Methanosarcina acetivorans C2A] Length = 346 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 33/66 (50%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 ERC+ C LCE ICP I + + + DID C++CG C CPV+AIV Sbjct: 106 NERCVHCGLCEDICPQGCIEVTREISPDGKLKLVGKTDIDTECCVHCGWCAAVCPVNAIV 165 Query: 120 EGPNFE 125 FE Sbjct: 166 VEKPFE 171 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 30/68 (44%), Gaps = 3/68 (4%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRT---VRYDIDMIKCIYCGLCQEACPV 115 E CIAC +C +CP A+ + + + ++ +C++CGLC++ CP Sbjct: 62 EREECIACGICARVCPTGALELRQEGKTLNDRSYIFEAMKPTTVNERCVHCGLCEDICPQ 121 Query: 116 DAIVEGPN 123 I Sbjct: 122 GCIEVTRE 129 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 30/87 (34%), Gaps = 4/87 (4%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 + + + R+ E+ C C C CP AI + Sbjct: 150 VHCGWCAAVCPVNAIVVEKPFEGRWTGSEDTCQTCHTCVETCPTNAIFNKKAKPGE---- 205 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAI 118 + + CIYCG C +CPV+AI Sbjct: 206 KVEKISHRPDACIYCGACAVSCPVNAI 232 Score = 42.0 bits (97), Expect = 0.030, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 1/71 (1%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM-IKCIYCGLCQEA 112 R+ ERCI C C CP + + + G ++ +CI CG+C Sbjct: 16 RQLIYKPERCIGCGTCVQACPKGILAVGAVGAVVRGLLDANFLEMKEREECIACGICARV 75 Query: 113 CPVDAIVEGPN 123 CP A+ Sbjct: 76 CPTGALELRQE 86 Score = 41.6 bits (96), Expect = 0.038, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 8/61 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C+ C C A+CP AI +E R+ C C C E CP +AI Sbjct: 145 DTECCVHCGWCAAVCPVNAIVVEK--------PFEGRWTGSEDTCQTCHTCVETCPTNAI 196 Query: 119 V 119 Sbjct: 197 F 197 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 17/79 (21%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRR-----------------TVRYDIDM 100 + + CI C C CP AI + D ++ R + D Sbjct: 212 HRPDACIYCGACAVSCPVNAIDVRKTAILPDVEKKSVLEKKLLEAPVPEALLRTRLETDE 271 Query: 101 IKCIYCGLCQEACPVDAIV 119 C+ CG C CPV+A+ Sbjct: 272 YACLGCGNCVIVCPVNALY 290 Score = 34.7 bits (78), Expect = 4.1, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 28/93 (30%), Gaps = 9/93 (9%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT---------IESGPRCHDG 89 EK R E C+ C C +CP A+ + + Sbjct: 250 EKKLLEAPVPEALLRTRLETDEYACLGCGNCVIVCPVNALYSRELASGYLNDMDEKALLE 309 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + + ++ C G C CPV+AI Sbjct: 310 VKNGIISVVNQDVCGADGACAMICPVNAIWLVK 342 >gi|150402632|ref|YP_001329926.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanococcus maripaludis C7] gi|150033662|gb|ABR65775.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus maripaludis C7] Length = 393 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 42/113 (37%), Gaps = 14/113 (12%) Query: 9 SFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKL 68 S +L EFV + +F T RFR + + E+CI+C Sbjct: 4 SIWYLYEFVR------KKWFMRFTNAKSEKGSFIPPERFRRIPVI---FDLPEKCISCSA 54 Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C CP+ AI +E D CI CG C E+CP + + G Sbjct: 55 CAESCPSDAIKMEYNEEFKKNMPVF-----DAGSCINCGNCVESCPTNVLEMG 102 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 8/64 (12%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 Y EE+CI C++C C P ++ T I+ C+ CGLCQ ACP Sbjct: 275 CYIVDEEKCIGCRICYRACNV--------PEAILISKETNLPYINPEYCVRCGLCQNACP 326 Query: 115 VDAI 118 VDAI Sbjct: 327 VDAI 330 Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 32/103 (31%), Positives = 46/103 (44%), Gaps = 16/103 (15%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 L EE C++C CE CP AI+ + Y+ID+ C+ C C Sbjct: 116 PKLVNLLIDEEICVSCGSCENACPVNAISHNNNG----------LYEIDVNLCVSCKNCV 165 Query: 111 EACPV-DAIVEGPNFEFAT--ETRQELYYDKERLLNNGDRWES 150 EACPV +AIV + + E Q + ++ ERL G +E Sbjct: 166 EACPVENAIVTYDEPKLSEQIEIAQNIKFNMERL---GSDFEE 205 Score = 37.8 bits (86), Expect = 0.50, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 22/57 (38%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 + A + + + RR KCI C C E+CP DAI N EF Sbjct: 16 WFMRFTNAKSEKGSFIPPERFRRIPVIFDLPEKCISCSACAESCPSDAIKMEYNEEF 72 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 24/82 (29%), Gaps = 23/82 (28%) Query: 56 YPNGEERCIACKLCEAICPA-QAITIESGPR----------------------CHDGTRR 92 Y C++CK C CP AI P+ D Sbjct: 151 YEIDVNLCVSCKNCVEACPVENAIVTYDEPKLSEQIEIAQNIKFNMERLGSDFEEDRDVI 210 Query: 93 TVRYDIDMIKCIYCGLCQEACP 114 + I CI CG C + CP Sbjct: 211 SEIPRIVPSLCIGCGNCVDVCP 232 >gi|294102539|ref|YP_003554397.1| NADH dehydrogenase (quinone) [Aminobacterium colombiense DSM 12261] gi|293617519|gb|ADE57673.1| NADH dehydrogenase (quinone) [Aminobacterium colombiense DSM 12261] Length = 597 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 30/100 (30%), Positives = 40/100 (40%), Gaps = 15/100 (15%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 LRY F+ + + +K AL Y ++ C C LC CP I + Sbjct: 513 TTLRY-FRDEYVAHVKDKKCPAGVCS----ALIEYSIDQDLCKRCGLCARNCPVHCIPGD 567 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 R Y ID +CI CG C E CP AI++G Sbjct: 568 ----------RASGYTIDTERCIRCGTCFEKCPFGAIIKG 597 >gi|218779007|ref|YP_002430325.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfatibacillum alkenivorans AK-01] gi|218760391|gb|ACL02857.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfatibacillum alkenivorans AK-01] Length = 362 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 27/77 (35%), Gaps = 11/77 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI C C C AI+++ I CI CG C CP +AI Sbjct: 292 DGDLCIGCGECLDRCQVAAISLDGDAAV-----------IAGEYCIGCGNCATVCPQEAI 340 Query: 119 VEGPNFEFATETRQELY 135 E A + R + Sbjct: 341 SMVRCAEKAPQPRPDFI 357 >gi|134045161|ref|YP_001096647.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanococcus maripaludis C5] gi|132662786|gb|ABO34432.1| membrane-bound hydrogenase subunit ehaP [Methanococcus maripaludis C5] Length = 393 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 30/113 (26%), Positives = 42/113 (37%), Gaps = 14/113 (12%) Query: 9 SFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKL 68 S +L EFV + +F T RFR + + E+CI+C Sbjct: 4 SIWYLYEFVR------KKWFMRFTNAKSEKGSFIPPKRFRKIPVI---FDLPEKCISCSA 54 Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C CP+ AI +E D CI CG C E+CP + + G Sbjct: 55 CAESCPSDAIKMEYNEEFKKNMPVF-----DAGSCINCGNCVESCPTNVLEMG 102 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 8/64 (12%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 Y EE+CI C++C C P + T I+ C+ CGLCQ ACP Sbjct: 275 CYLVDEEKCIGCRICYRACNV--------PEAVSISNETNLPYINPEYCVRCGLCQNACP 326 Query: 115 VDAI 118 VDAI Sbjct: 327 VDAI 330 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 29/65 (44%), Gaps = 10/65 (15%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 L EE C++C CE CP AI+ S Y+ID+ C+ C C Sbjct: 116 PKLVNLLIDEEICVSCGSCENACPVDAISHNSNG----------LYEIDVNLCVSCKNCV 165 Query: 111 EACPV 115 EACPV Sbjct: 166 EACPV 170 Score = 37.8 bits (86), Expect = 0.53, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 21/57 (36%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 + A + + R+ KCI C C E+CP DAI N EF Sbjct: 16 WFMRFTNAKSEKGSFIPPKRFRKIPVIFDLPEKCISCSACAESCPSDAIKMEYNEEF 72 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 16/59 (27%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 CI C C +C +++ C+ CG C E CP AI G Sbjct: 221 CIGCGNCVDVCS----------------GSIDLERLEVTSCVRCGKCLEVCPTTAIRIG 263 >gi|150391791|ref|YP_001321840.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF] gi|149951653|gb|ABR50181.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF] Length = 598 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 29/68 (42%), Gaps = 9/68 (13%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 AL +Y E C C +C CP I+ G Y ID KCI CG C Sbjct: 537 KALAKYLVVSELCKKCGICAKKCPVDCISGVKGKE---------VYLIDQEKCIKCGACL 587 Query: 111 EACPVDAI 118 EACP AI Sbjct: 588 EACPFKAI 595 Score = 35.5 bits (80), Expect = 2.4, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 17/49 (34%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + + + +Y + C CG+C + CPVD I Sbjct: 516 KYFRDEYDAHVHDKSCPAGVCKALAKYLVVSELCKKCGICAKKCPVDCI 564 >gi|189461429|ref|ZP_03010214.1| hypothetical protein BACCOP_02084 [Bacteroides coprocola DSM 17136] gi|189431958|gb|EDV00943.1| hypothetical protein BACCOP_02084 [Bacteroides coprocola DSM 17136] Length = 490 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110 + CI+C +C CP AI P + + D ID KCIYCG C Sbjct: 146 HIDHDTCISCGICHKSCPYHAIVYIPVPCEEACPVKAISKDENNIEHIDESKCIYCGKCL 205 Query: 111 EACPVDAIVE 120 ACP AI E Sbjct: 206 NACPFGAIFE 215 Score = 42.0 bits (97), Expect = 0.029, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 34/98 (34%), Gaps = 13/98 (13%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIA---CKLCEAI----------CPAQAITIESGP 84 E S R R C+ C C + C A++ + Sbjct: 74 DELTPLSEYARQALDRRNKLKENILCVIDEACSSCVQVNYEVSNLCRGCVARSCYMNCPK 133 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 ++T + ID CI CG+C ++CP AIV P Sbjct: 134 GAVHFDKKTGQAHIDHDTCISCGICHKSCPYHAIVYIP 171 >gi|19704753|ref|NP_604315.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19715079|gb|AAL95614.1| Pyruvate-flavodoxin oxidoreductase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 1190 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 37/120 (30%), Gaps = 20/120 (16%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI----------------TIE 81 FE G+ + RG N ++CI C C +CP AI Sbjct: 679 FENGTAAFEKRGVAVNVPIWN-LDKCIECNQCAYVCPHAAIRAFLITDEEKAASPVEFAT 737 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN---FEFATETRQELYYDK 138 T R + + C CG C CP A+ P E + + Y K Sbjct: 738 KKANGKGLEDLTYRIQVTPLDCTGCGSCANVCPAKALDMNPIAVALENHEDEKAAYIYSK 797 >gi|323703081|ref|ZP_08114736.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574] gi|323531975|gb|EGB21859.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574] Length = 645 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 15/97 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 LR FF+ + + + L + +CI+C +C C AI+ E Sbjct: 540 TLR-FFREEYIAHVRDKTCPAGVC----RELTDFVVDPAKCISCGICAKACGVGAISGEK 594 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + ID KCI CG CQ CP +AI Sbjct: 595 KKP----------FYIDRQKCIKCGACQARCPKEAIF 621 >gi|167465595|ref|ZP_02330684.1| pyruvate ferredoxin oxidoreductase gamma-delta subunit [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381244|ref|ZP_08055247.1| hypothetical protein PL1_0156 [Paenibacillus larvae subsp. larvae B-3650] gi|321154820|gb|EFX47091.1| hypothetical protein PL1_0156 [Paenibacillus larvae subsp. larvae B-3650] Length = 336 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 1/67 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ CI C C+ CP G G + ID C C C EACP A+ Sbjct: 253 NQQDCINCAACDQSCPDFCFVWAEGEDKK-GRKHQFLQGIDYQYCKGCLKCVEACPTTAL 311 Query: 119 VEGPNFE 125 +G E Sbjct: 312 SKGRETE 318 >gi|94266046|ref|ZP_01289766.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium MLMS-1] gi|93453406|gb|EAT03831.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium MLMS-1] Length = 677 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 6/62 (9%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C +CE C AI+ + RY +D +CI CG C CP P Sbjct: 622 CRDCHICEHTCHYGAISRQDLGAGDY------RYVVDESRCIGCGFCAGVCPCGVWEMQP 675 Query: 123 NF 124 + Sbjct: 676 RW 677 >gi|257437722|ref|ZP_05613477.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Faecalibacterium prausnitzii A2-165] gi|257200029|gb|EEU98313.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Faecalibacterium prausnitzii A2-165] Length = 1181 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 28/99 (28%), Gaps = 15/99 (15%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ--------------AITIESGP 84 E+G+++ RG +C+ C C +C A Sbjct: 674 EQGASAYEKRGTAVNVPEW-DASKCVGCNQCAFVCSHATIRPFQLTADELAAAPAQTKSR 732 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + + C+ CG C CP AI P Sbjct: 733 DNRPANEYKFVMAVSPLDCMGCGECVTVCPTKAIAMVPQ 771 >gi|118580368|ref|YP_901618.1| cobyrinic acid a,c-diamide synthase [Pelobacter propionicus DSM 2379] gi|118503078|gb|ABK99560.1| Cobyrinic acid a,c-diamide synthase [Pelobacter propionicus DSM 2379] Length = 305 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 6/61 (9%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + CI C +C C A+ +E R + ID C CG+C CPV I Sbjct: 80 QSDCIGCGVCRRWCRFDAVNMEKNDRGE------TVFSIDPASCEGCGVCVRFCPVQVID 133 Query: 120 E 120 Sbjct: 134 F 134 Score = 34.3 bits (77), Expect = 5.0, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 6/42 (14%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139 I CI CG+C+ C DA+ N R E + + Sbjct: 78 ILQSDCIGCGVCRRWCRFDAVNMEKN------DRGETVFSID 113 >gi|31580611|gb|AAP51030.1| EchF [Desulfovibrio gigas] Length = 105 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 39/99 (39%), Gaps = 14/99 (14%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 ++ K+T YPF P RGE E+CI C C CP+Q I+++ Sbjct: 9 TVVKNLINKKSTRPYPFVVREPFPDQRGEL-----YCDIEQCIFCGTCARKCPSQCISVD 63 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + D C+YCG C+E CP + Sbjct: 64 KE---------QGIWKCDPFACVYCGTCEEVCPTHCLHH 93 >gi|188585512|ref|YP_001917057.1| hydrogenase large subunit domain protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350199|gb|ACB84469.1| hydrogenase large subunit domain protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 507 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 29/77 (37%), Positives = 37/77 (48%), Gaps = 6/77 (7%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCG 107 R+ +E+CI C C+ +CP AI+ P T V+ D ID KC+ CG Sbjct: 138 RQAYINQEKCIECGKCKNMCPFNAISDVMRPCRSACTVDAVKVDGDRRISIDQDKCVSCG 197 Query: 108 LCQEACPVDAIVEGPNF 124 C EACP AI NF Sbjct: 198 ACIEACPFGAIASKSNF 214 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 20/64 (31%), Gaps = 3/64 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 R + C + R+ I+ KCI CG C+ CP Sbjct: 102 CDKCPINRFTVTEACRGCVAHYCMESCPKDAISFINRQA---YINQEKCIECGKCKNMCP 158 Query: 115 VDAI 118 +AI Sbjct: 159 FNAI 162 >gi|108801828|ref|YP_642025.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Mycobacterium sp. MCS] gi|119870981|ref|YP_940933.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [Mycobacterium sp. KMS] gi|108772247|gb|ABG10969.1| Pyruvate:ferredoxin (flavodoxin) oxidoreductase [Mycobacterium sp. MCS] gi|119697070|gb|ABL94143.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Mycobacterium sp. KMS] Length = 1191 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 30/100 (30%), Gaps = 24/100 (24%) Query: 58 NGEERCIACKLCEAICPA--------QAITIESGP--------RCHDGTRRTVRYDIDMI 101 + CI C C +CP A ++ P + + Sbjct: 687 WDPDTCIQCGNCAFVCPHSVIRTKLYDADRLDGAPGAFASAPLNAVGLPESRYTLQVYVE 746 Query: 102 KCIYCGLCQEACP--------VDAIVEGPNFEFATETRQE 133 C CGLC EACP AI GP E R+ Sbjct: 747 DCTGCGLCVEACPAVAPGIPLTKAINLGPREPLVAEQREN 786 >gi|21227667|ref|NP_633589.1| molybdenum formylmethanofuran dehydrogenase subunit [Methanosarcina mazei Go1] gi|20906059|gb|AAM31261.1| molybdenum formylmethanofuran dehydrogenase subunit [Methanosarcina mazei Go1] Length = 346 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 1/76 (1%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 E C+ C LCE IC I + + + ID C++CG C CPV+AI Sbjct: 106 NESCVHCGLCEDICSQGCIEVTREISTDGKLKVIGKTHIDTECCVHCGWCAAVCPVNAIS 165 Query: 120 EGPNFEFATETRQELY 135 FE +R E Sbjct: 166 VEKPFE-GRWSRDENV 180 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 31/87 (35%), Gaps = 4/87 (4%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 + + + R+ E C C C +CPA AI + Sbjct: 150 VHCGWCAAVCPVNAISVEKPFEGRWSRDENVCQTCHTCIDVCPANAIFNKKAKSGE---- 205 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAI 118 R + CIYCG C ACPVDAI Sbjct: 206 RVEKITHRPDACIYCGACAVACPVDAI 232 Score = 41.2 bits (95), Expect = 0.051, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 1/71 (1%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI-DMIKCIYCGLCQEA 112 R+ E+CI C C CP ++I + G ++ C+ CG+C + Sbjct: 16 RQLVYQPEKCIGCGTCVQACPKGTLSIGAVGAVARGLLDADFLEMAKSEDCLVCGICAKV 75 Query: 113 CPVDAIVEGPN 123 CP A+ Sbjct: 76 CPTGALELRQE 86 Score = 40.9 bits (94), Expect = 0.069, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 8/69 (11%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + + E C+ C C A+CP AI++E R+ D C C C Sbjct: 137 KVIGKTHIDTECCVHCGWCAAVCPVNAISVEK--------PFEGRWSRDENVCQTCHTCI 188 Query: 111 EACPVDAIV 119 + CP +AI Sbjct: 189 DVCPANAIF 197 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 9/95 (9%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT---------IESGPRCH 87 P EK + + ++ C+ C C +CP A + + Sbjct: 248 PLEKKLIEVPAPEDALRTQLETDDDACLGCGNCVIVCPVNAFDNRELAAGYLYDMDEKAI 307 Query: 88 DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 G + ++ +C G C CPVDAI Sbjct: 308 LGVKNGKISVVNQERCGGDGTCALICPVDAIRLVK 342 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 17/77 (22%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRR-----------------TVRYDIDM 100 + + CI C C CP AI + + ++ + + D Sbjct: 212 HRPDACIYCGACAVACPVDAIDVRKTAILPEMEKKGPLEKKLIEVPAPEDALRTQLETDD 271 Query: 101 IKCIYCGLCQEACPVDA 117 C+ CG C CPV+A Sbjct: 272 DACLGCGNCVIVCPVNA 288 Score = 39.3 bits (90), Expect = 0.20, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 3/66 (4%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM---IKCIYCGLCQEACPVDA 117 E C+ C +C +CP A+ + + R C++CGLC++ C Sbjct: 64 EDCLVCGICAKVCPTGALELRQEGKPLTDMSYISRAMRPTSVNESCVHCGLCEDICSQGC 123 Query: 118 IVEGPN 123 I Sbjct: 124 IEVTRE 129 Score = 33.9 bits (76), Expect = 8.1, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 15/31 (48%) Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 ++ + KCI CG C +ACP + G Sbjct: 13 KKDRQLVYQPEKCIGCGTCVQACPKGTLSIG 43 >gi|261368692|ref|ZP_05981575.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Subdoligranulum variabile DSM 15176] gi|282569230|gb|EFB74765.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Subdoligranulum variabile DSM 15176] Length = 909 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 26/91 (28%), Gaps = 16/91 (17%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQ------------AITIESGPRCHDGTR---R 92 RG + +CI C C +C A ES + Sbjct: 676 RGTAVMVPEW-DPSKCIQCNNCAFVCSHATIRPFCLTADELAKAPESLKSADTKPKASEY 734 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + + C+ CG C CP AI P Sbjct: 735 KFTIAVSPLDCMGCGECVTVCPTKAIEMKPQ 765 >gi|148265954|ref|YP_001232660.1| nitrite and sulphite reductase 4Fe-4S region [Geobacter uraniireducens Rf4] gi|146399454|gb|ABQ28087.1| nitrite and sulphite reductase 4Fe-4S region [Geobacter uraniireducens Rf4] Length = 315 Score = 55.9 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 10/83 (12%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 PF+ ++ G +E CI+C LC C AI + + Sbjct: 146 CPFDCPKSATNDVGFQGAIWPELSKEECISCGLCAKSCTEGAIAMGDDGKPVF------- 198 Query: 96 YDIDMIKCIYCGLCQEACPVDAI 118 KCIYCG C + CP +A Sbjct: 199 ---RADKCIYCGDCVKVCPTEAW 218 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 22/51 (43%), Gaps = 3/51 (5%) Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 CP + G + + ++ +CI CGLC ++C AI G + Sbjct: 146 CPFDCPKSATN---DVGFQGAIWPELSKEECISCGLCAKSCTEGAIAMGDD 193 >gi|255021729|ref|ZP_05293769.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Acidithiobacillus caldus ATCC 51756] gi|254968869|gb|EET26391.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Acidithiobacillus caldus ATCC 51756] Length = 264 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 44/121 (36%), Gaps = 14/121 (11%) Query: 40 KGSTSPRFRGEHALRRYPNGEERC-IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 + + L G C C C A CP AI + +G ++ Sbjct: 17 RWPQRGPDGQDGVLGMPRWGPAACRTGCDACVAACPTGAIQVNAGKA-----------EV 65 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERL-LNNGDRWESEIVRNIV 157 D +CI C C E CP A+ ++ F R++L + KE L G + R++ Sbjct: 66 DYGRCIVCQRCVEDCPEGAMTSSYDWAFGVRRREDLLW-KEALDSRVGQDLGKRVARSLR 124 Query: 158 T 158 Sbjct: 125 R 125 >gi|119872732|ref|YP_930739.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Pyrobaculum islandicum DSM 4184] gi|119674140|gb|ABL88396.1| pyruvate ferredoxin oxidoreductase, delta subunit [Pyrobaculum islandicum DSM 4184] Length = 103 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 1/75 (1%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G LR N ERCI C+LC CP I + G V+Y+I+ C CG+ Sbjct: 28 GWRTLRPVIND-ERCIRCQLCWLYCPEGTIVEKRGVFKVGNRTYDVKYEINYDYCKGCGI 86 Query: 109 CQEACPVDAIVEGPN 123 C CP AI P Sbjct: 87 CANECPTKAIEMVPE 101 >gi|325479368|gb|EGC82464.1| pyruvate synthase [Anaerococcus prevotii ACS-065-V-Col13] Length = 1178 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 39/133 (29%), Gaps = 31/133 (23%) Query: 24 LRYFFKA---------KTTINYPFE----KGSTSPRFRGEHALRRYPNGEERCIACKLCE 70 +R K + P++ TS + AL E CI C C Sbjct: 639 IRNMVKPIINLHEDDLPVSAYLPYDDGQYMPGTSQYEKRGIALFVPEWKIENCIQCNQCS 698 Query: 71 AICPAQAITI-----ESGPRCHDGT-----------RRTVRYDIDMIKCIYCGLCQEAC- 113 +CP I E+ +G R + C+ CG C + C Sbjct: 699 FVCPHATIRPFLLDEEAKKNAPEGFETKKAIGKGLENYEFRIQVSPYDCMGCGNCVDVCP 758 Query: 114 -PVDAIVEGPNFE 125 P A+ P E Sbjct: 759 APTKALEMKPIDE 771 >gi|212696805|ref|ZP_03304933.1| hypothetical protein ANHYDRO_01367 [Anaerococcus hydrogenalis DSM 7454] gi|212676095|gb|EEB35702.1| hypothetical protein ANHYDRO_01367 [Anaerococcus hydrogenalis DSM 7454] Length = 502 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 7/77 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112 +++CI C C CP AI+ P + ++ D ID KC+ CG C A Sbjct: 146 DQDKCIKCGKCVQACPYNAISHTKRPCAEACGVKAIKSDKLNRAEIDDDKCVACGRCITA 205 Query: 113 CPVDAI-VEGPNFEFAT 128 CP AI + ++ A Sbjct: 206 CPFGAISDKTEIYQLAK 222 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 5/65 (7%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-----IDMIKCIYCGLCQEACPVDA 117 C AC + P + + + Y ID KCI CG C +ACP +A Sbjct: 105 CEACPENRVEVTNTCRACIAHPCVNVCPKNAITYTSKGSIIDQDKCIKCGKCVQACPYNA 164 Query: 118 IVEGP 122 I Sbjct: 165 ISHTK 169 >gi|153809516|ref|ZP_01962184.1| hypothetical protein BACCAC_03834 [Bacteroides caccae ATCC 43185] gi|149127824|gb|EDM19047.1| hypothetical protein BACCAC_03834 [Bacteroides caccae ATCC 43185] Length = 489 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 28/68 (41%), Gaps = 6/68 (8%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQEA 112 E CI+C +C CP AI P + ID KCIYCG C A Sbjct: 148 DHETCISCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDESKCIYCGKCMNA 207 Query: 113 CPVDAIVE 120 CP AI E Sbjct: 208 CPFGAIFE 215 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 8/70 (11%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 ++ C C C P+ ++ + ID CI CG+C ++ Sbjct: 110 IQINYEITNLCRGC--VARSCYMNC------PKDAIRFKKNGQAMIDHETCISCGICHKS 161 Query: 113 CPVDAIVEGP 122 CP AIV P Sbjct: 162 CPYHAIVYIP 171 >gi|111018949|ref|YP_701921.1| ferredoxin--NADP(+) reductase [Rhodococcus jostii RHA1] gi|110818479|gb|ABG93763.1| probable ferredoxin--NADP(+) reductase [Rhodococcus jostii RHA1] Length = 553 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 3/59 (5%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C C + CP I R +T ID CI CG C +ACPVDAI Sbjct: 7 QACCNDASCVSACPVNCIHPTPEERE---FAQTEMLHIDPETCIDCGACVDACPVDAIF 62 >gi|325847091|ref|ZP_08169917.1| 4Fe-4S binding domain protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481063|gb|EGC84108.1| 4Fe-4S binding domain protein [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 502 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 7/77 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112 +++CI C C CP AI+ P + ++ D ID KC+ CG C A Sbjct: 146 DQDKCIKCGKCVQACPYNAISHTKRPCAEACGVKAIKSDKLNRAEIDDDKCVACGRCITA 205 Query: 113 CPVDAI-VEGPNFEFAT 128 CP AI + ++ A Sbjct: 206 CPFGAISDKTEIYQLAK 222 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 5/65 (7%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-----IDMIKCIYCGLCQEACPVDA 117 C AC + P + + + Y ID KCI CG C +ACP +A Sbjct: 105 CEACPENRVEVTNTCRACIAHPCVNVCPKNAITYTSKGSIIDQDKCIKCGKCVQACPYNA 164 Query: 118 IVEGP 122 I Sbjct: 165 ISHTK 169 >gi|145590459|ref|YP_001152461.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Pyrobaculum arsenaticum DSM 13514] gi|145282227|gb|ABP49809.1| pyruvate ferredoxin oxidoreductase, delta subunit [Pyrobaculum arsenaticum DSM 13514] Length = 102 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 1/75 (1%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G ALR + +RC+ C+LC CP I G +Y+I+ C CG+ Sbjct: 28 GWRALRPVIHD-DRCVRCQLCWLYCPEGTIVELKGIFKVGNRTYDTKYEINYDYCKGCGI 86 Query: 109 CQEACPVDAIVEGPN 123 C CP AI P Sbjct: 87 CANECPTKAIEMVPE 101 >gi|119870982|ref|YP_940934.1| putative glutamate synthase (NADPH) small subunit [Mycobacterium sp. KMS] gi|161407219|ref|YP_642026.2| putative glutamate synthase (NADPH) small subunit [Mycobacterium sp. MCS] gi|119697071|gb|ABL94144.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Mycobacterium sp. KMS] Length = 559 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 8/62 (12%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C C CP AI + Y+ +C CG C E CPV AI Sbjct: 504 NCFECDGCYGACPEDAIIKVAEGHHG--------YEFVYDRCTGCGACFEQCPVHAIEML 555 Query: 122 PN 123 P Sbjct: 556 PE 557 >gi|254448496|ref|ZP_05061956.1| eleCtron transport complex, rnfabcdge type, c subunit [gamma proteobacterium HTCC5015] gi|198261879|gb|EDY86164.1| eleCtron transport complex, rnfabcdge type, c subunit [gamma proteobacterium HTCC5015] Length = 792 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 42/122 (34%), Gaps = 2/122 (1%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 T P K + G+ P + CI C C CPA + + Sbjct: 331 TDELPIVKATNCILA-GQAGEIADPGHADPCIRCGACADACPADLLPQQLYWYSKSREFE 389 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEI 152 + + ++ CI CG C CP I + FA + +K + + +R + + Sbjct: 390 RAQDEYNLFDCIECGCCSYVCPSH-IPLVQYYRFAKTEIRNAEVEKRKAEHAKERHDFRL 448 Query: 153 VR 154 R Sbjct: 449 ER 450 >gi|160944252|ref|ZP_02091481.1| hypothetical protein FAEPRAM212_01761 [Faecalibacterium prausnitzii M21/2] gi|158444434|gb|EDP21438.1| hypothetical protein FAEPRAM212_01761 [Faecalibacterium prausnitzii M21/2] Length = 1206 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 28/99 (28%), Gaps = 15/99 (15%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ--------------AITIESGP 84 E+G+++ RG +C+ C C +C A Sbjct: 699 EQGASAYEKRGTAVNVPEW-DAAKCVGCNQCAFVCSHATIRPFLLTADELAAAPAQTKSR 757 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + + C+ CG C CP AI P Sbjct: 758 DNKLTPEYKFVMAVSPLDCMGCGECVTVCPTKAITMVPQ 796 >gi|34762397|ref|ZP_00143398.1| Pyruvate-flavodoxin oxidoreductase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|237742092|ref|ZP_04572573.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. 4_1_13] gi|256845429|ref|ZP_05550887.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Fusobacterium sp. 3_1_36A2] gi|294785275|ref|ZP_06750563.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Fusobacterium sp. 3_1_27] gi|27887922|gb|EAA24989.1| Pyruvate-flavodoxin oxidoreductase [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|229429740|gb|EEO39952.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. 4_1_13] gi|256718988|gb|EEU32543.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Fusobacterium sp. 3_1_36A2] gi|294486989|gb|EFG34351.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Fusobacterium sp. 3_1_27] Length = 1189 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 18/112 (16%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE--------------SG 83 FE G+++ RG N ++CI C C +CP AI + Sbjct: 676 FENGTSAFEKRGVAVDVPIWN-VDKCIQCNQCSYVCPHAAIRPFLINEDELKAAPNSFAT 734 Query: 84 PRCHDGTRRTVRYDIDMI--KCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 + + Y I + C+ CG C CP +A+ P E + ET ++ Sbjct: 735 KKAAGKGLDGLVYRIQVSALDCVGCGSCANVCPANALDMRPIAE-SLETHED 785 >gi|226358185|ref|YP_002787924.1| formate dehydrogenase, alpha subunit [Deinococcus deserti VCD115] gi|226319828|gb|ACO47822.1| putative formate dehydrogenase, alpha subunit [Deinococcus deserti VCD115] Length = 999 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 3/84 (3%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---YD 97 + + Y ++CI C C C + D R + Sbjct: 127 PYHPKPYLKDETNPFYRYDPDQCILCGRCVEACQNLQVNETLTINWEDPHPRVLWDGGRP 186 Query: 98 IDMIKCIYCGLCQEACPVDAIVEG 121 I+ C+ CG C CP +A++E Sbjct: 187 INESSCVSCGHCVTVCPCNALMET 210 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 22/75 (29%), Gaps = 9/75 (12%) Query: 48 RGEHALRRYPNGEERCIAC----KLCEA-----ICPAQAITIESGPRCHDGTRRTVRYDI 98 R + N C C C + Q P+ + Y Sbjct: 85 RATAFDKILGNHLLYCTVCDNNNGNCVVHNTTALMKVQHQVTPYHPKPYLKDETNPFYRY 144 Query: 99 DMIKCIYCGLCQEAC 113 D +CI CG C EAC Sbjct: 145 DPDQCILCGRCVEAC 159 >gi|295103724|emb|CBL01268.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [Faecalibacterium prausnitzii SL3/3] Length = 1174 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 28/99 (28%), Gaps = 15/99 (15%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ--------------AITIESGP 84 E+G+++ RG +C+ C C +C A Sbjct: 667 EQGASAYEKRGTAVNVPEW-DAAKCVGCNQCAFVCSHATIRPFLLTADELAAAPAQTKSR 725 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + + C+ CG C CP AI P Sbjct: 726 DNKLTPEYKFVMAVSPLDCMGCGECVTVCPTKAITMVPQ 764 >gi|19704505|ref|NP_604067.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19714781|gb|AAL95366.1| Pyruvate-flavodoxin oxidoreductase [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 1188 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 18/112 (16%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE--------------SG 83 FE G+++ RG N ++CI C C +CP AI + Sbjct: 675 FENGTSAFEKRGVAVDVPIWN-VDKCIQCNQCSYVCPHAAIRPFLINEDELKAAPNSFAT 733 Query: 84 PRCHDGTRRTVRYDIDMI--KCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 + + Y I + C+ CG C CP +A+ P E + ET ++ Sbjct: 734 KKATGKGLDELVYRIQVSALDCVGCGSCANVCPANALDMRPIAE-SLETHED 784 >gi|227499381|ref|ZP_03929492.1| NADH dehydrogenase (ubiquinone) [Anaerococcus tetradius ATCC 35098] gi|227218585|gb|EEI83825.1| NADH dehydrogenase (ubiquinone) [Anaerococcus tetradius ATCC 35098] Length = 526 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 31/82 (37%), Positives = 40/82 (48%), Gaps = 12/82 (14%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 K T P R L E CI C C+ +CPAQAI+ E +++I+ Sbjct: 457 KTKTCPAKRCLSLLNYDI--GEACIGCGKCKRLCPAQAISGE----------VRNKHEIN 504 Query: 100 MIKCIYCGLCQEACPVDAIVEG 121 KCI CG C+E CP+DAI G Sbjct: 505 QDKCIKCGQCKENCPIDAICLG 526 >gi|108803761|ref|YP_643698.1| 2-oxoacid:acceptor oxidoreductase subunit delta, pyruvate/2-ketoisovalerate [Rubrobacter xylanophilus DSM 9941] gi|108765004|gb|ABG03886.1| 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate [Rubrobacter xylanophilus DSM 9941] Length = 403 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 37/106 (34%), Gaps = 12/106 (11%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117 + CI C+ C CP + + I+ C CG+C + CPV D Sbjct: 289 NFDTCIKCRQCWIDCPDECFEVTEEGLHP----------INYEYCTGCGICSQVCPVEDC 338 Query: 118 IVEGPNFEFATE-TRQELYYDKERLLNNGDRWESEIVRNIVTDSPY 162 IV + EF E R K+ E +I R + Y Sbjct: 339 IVMVNDLEFIDEGDRDVYEMWKQDPEAYHRWREEKIARGRIEHHGY 384 >gi|237747571|ref|ZP_04578051.1| molybdopterin oxidoreductase [Oxalobacter formigenes OXCC13] gi|229378933|gb|EEO29024.1| molybdopterin oxidoreductase [Oxalobacter formigenes OXCC13] Length = 698 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 21/58 (36%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI C LCE C +G + KCI CG C CP AI Sbjct: 562 DICIGCGLCELACIEVGAEALKMIETKNGRMVFNDFTTPAEKCIGCGACTSVCPTGAI 619 >gi|224024973|ref|ZP_03643339.1| hypothetical protein BACCOPRO_01704 [Bacteroides coprophilus DSM 18228] gi|224018209|gb|EEF76207.1| hypothetical protein BACCOPRO_01704 [Bacteroides coprophilus DSM 18228] Length = 462 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110 + CI+C +C CP AI P + + D I+ KCIYCG C Sbjct: 147 HIDHDTCISCGICHKSCPYHAIVYIPVPCEEACPVKAISKDEHNIEHINEDKCIYCGKCL 206 Query: 111 EACPVDAIVE 120 ACP AI E Sbjct: 207 NACPFGAIFE 216 Score = 41.6 bits (96), Expect = 0.033, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 7/82 (8%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-------IDM 100 RG+ +E C +C + + + V +D ID Sbjct: 91 RGKIKENILCVIDEACSSCVQVNYEVSNLCRGCVARSCYMNCPKGAVHFDKKTGQAHIDH 150 Query: 101 IKCIYCGLCQEACPVDAIVEGP 122 CI CG+C ++CP AIV P Sbjct: 151 DTCISCGICHKSCPYHAIVYIP 172 >gi|217967308|ref|YP_002352814.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724] gi|217336407|gb|ACK42200.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724] Length = 596 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 36/97 (37%), Gaps = 15/97 (15%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 L+Y F+ + + +K AL Y E C C +C CP AI + Sbjct: 512 TTLKY-FRDEYLAHIRDKKCPAKVCT----ALIHYEVIREECRKCSICFRNCPVGAIYKD 566 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 Y ID KC CG+C + CP AI Sbjct: 567 EDG----------TYVIDQSKCTKCGICFQVCPFSAI 593 >gi|325294577|ref|YP_004281091.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065025|gb|ADY73032.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfurobacterium thermolithotrophum DSM 11699] Length = 765 Score = 55.5 bits (132), Expect = 2e-06, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 7/89 (7%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI-------TIESGPRCHDGTRRTVRY 96 S F+ + + ++CIAC CE +CP + T Y Sbjct: 228 SGTFKVKIRRKSIKINPDKCIACGECEKVCPVEVPNEFNLGKTKRKAIYKPFPLAIPDVY 287 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 ID CI+CG C++ CP AI E Sbjct: 288 HIDEAACIFCGECEKVCPTQAINLQAESE 316 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 5/82 (6%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100 +G +++C C+ C CP AI+++ G D +ID Sbjct: 535 PKIYKDLKGREKKYYAQIDQDKCSRCETCLMCCPHGAISVKKGKTPEDNW-----IEIDP 589 Query: 101 IKCIYCGLCQEACPVDAIVEGP 122 C CGLC ACP AI Sbjct: 590 NLCRGCGLCYAACPSKAINFSN 611 >gi|325295368|ref|YP_004281882.1| NADH dehydrogenase subunit I [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065816|gb|ADY73823.1| NADH dehydrogenase subunit I [Desulfurobacterium thermolithotrophum DSM 11699] Length = 169 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 12/118 (10%) Query: 15 EFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP 74 E V + F+ K T + + +RG+H ++ CI C LC CP Sbjct: 12 EVVKKLIRITKAVFRPKATEVWLDKDIKRDYHYRGKHIIK-----AAICIGCGLCARTCP 66 Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC---PVDAIVEGPNFEFATE 129 + I + + + +C++CG C++ C P AI + E Sbjct: 67 VKCIEMIPTGVK----KPRAIPRVKASECMFCGFCEDVCPAKPEKAIKLTDIYAMYVE 120 >gi|296328384|ref|ZP_06870910.1| pyruvate:ferredoxin oxidoreductase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154458|gb|EFG95250.1| pyruvate:ferredoxin oxidoreductase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 1188 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 43/112 (38%), Gaps = 18/112 (16%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE--------------SG 83 FE G+++ RG N ++CI C C +CP AI + Sbjct: 675 FENGTSAFEKRGVAVDVPIWN-VDKCIQCNQCSYVCPHAAIRPFLINEDELKAAPNSFAT 733 Query: 84 PRCHDGTRRTVRYDIDMI--KCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 + + Y I + C+ CG C CP +A+ P E + ET ++ Sbjct: 734 KKATGKGLDELVYRIQVSALDCVGCGSCANVCPANALDMRPIAE-SLETHED 784 >gi|212704286|ref|ZP_03312414.1| hypothetical protein DESPIG_02341 [Desulfovibrio piger ATCC 29098] gi|212672248|gb|EEB32731.1| hypothetical protein DESPIG_02341 [Desulfovibrio piger ATCC 29098] Length = 193 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 10/108 (9%) Query: 20 FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79 + R + +T +P + T R RG + C+ C +C +C A AI Sbjct: 5 LKILFRNLLQGPSTDPFPLGETFTPERLRGRVKI-----DPNLCMGCGVCRHVCAAGAIN 59 Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 I P + C C C++ CP A+ ++ A Sbjct: 60 IRQKPDNSGY-----TITVWQDSCCLCASCRQYCPTGAMSITNDWHSA 102 >gi|329927647|ref|ZP_08281794.1| 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family [Paenibacillus sp. HGF5] gi|328938345|gb|EGG34736.1| 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family [Paenibacillus sp. HGF5] Length = 338 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 2/72 (2%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI-V 119 E CI C C+ +CP I E P G + ID C C C EACP A+ Sbjct: 255 EDCIHCAACDTVCPDFCIVWEKKPD-KRGNMQMFMKGIDYQYCKGCLKCIEACPTTALAA 313 Query: 120 EGPNFEFATETR 131 +A + R Sbjct: 314 MLEEPHYAEQHR 325 Score = 34.7 bits (78), Expect = 3.9, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 4/46 (8%) Query: 89 GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134 G+R+ + + CI+C C CP IV E + R + Sbjct: 243 GSRQGYLPEYKIEDCIHCAACDTVCPDFCIVW----EKKPDKRGNM 284 >gi|218780114|ref|YP_002431432.1| NADH dehydrogenase (quinone) [Desulfatibacillum alkenivorans AK-01] gi|218761498|gb|ACL03964.1| Putative NADH-quinone oxidoreductase, NADH-binding subunit NuoF [Desulfatibacillum alkenivorans AK-01] Length = 633 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 36/97 (37%), Gaps = 14/97 (14%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 L +FFK + + +K L Y + C C C CP AIT E Sbjct: 548 LTTLHFFKDEYLAHIKDQKCPAGVC----KDLITYSIDPDACTGCGACAKQCPNNAITGE 603 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + ID CI CG+C+E C +A+ Sbjct: 604 KKEP----------HTIDTDACIRCGICEETCKFNAV 630 >gi|85857933|ref|YP_460135.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus aciditrophicus SB] gi|85721024|gb|ABC75967.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus aciditrophicus SB] Length = 637 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 29/99 (29%), Positives = 41/99 (41%), Gaps = 15/99 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 +RY F+++ + +K AL +Y +E+C C C CP +AI+ E Sbjct: 554 TIRY-FRSEYDAHIRSKKCPAGVC----KALIQYNIDKEKCTGCMACAKKCPVEAISGER 608 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 ID KCI CG+C E C DAI Sbjct: 609 KKAHE----------IDQAKCIKCGVCMETCKFDAITLS 637 >gi|152992442|ref|YP_001358163.1| hypothetical protein SUN_0848 [Sulfurovum sp. NBC37-1] gi|151424303|dbj|BAF71806.1| hypothetical protein [Sulfurovum sp. NBC37-1] Length = 199 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 10/106 (9%) Query: 11 LFLKEFVGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69 + L + + F ++ + + R+RGEH + E CI C C Sbjct: 1 MILFDIAKKVLRVSKALFTESPAKVDVRYTAMHSPARYRGEHRI-----DYETCIGCDSC 55 Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 ICP AIT+ + ++ + ++++ CI+CGLC++ CP Sbjct: 56 NKICPTHAITM----KHLPFKKQNIVPEVNLSVCIFCGLCEDVCPT 97 Score = 41.6 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 16/53 (30%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + A H R + ID CI C C + CP AI Sbjct: 16 ALFTESPAKVDVRYTAMHSPARYRGEHRIDYETCIGCDSCNKICPTHAITMKH 68 >gi|325294930|ref|YP_004281444.1| NADH-ubiquinone oxidoreductase 23 kda subunit [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065378|gb|ADY73385.1| NADH-ubiquinone oxidoreductase 23 kda subunit [Desulfurobacterium thermolithotrophum DSM 11699] Length = 137 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 34/135 (25%), Positives = 49/135 (36%), Gaps = 12/135 (8%) Query: 24 LRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG 83 L+ FK T YPFE P +RG + +E CI C CE +CP AI Sbjct: 9 LKNLFKKPATHQYPFEPSPPPPNYRGNIVYK-----KELCIFCTKCELVCPPGAIRFTYN 63 Query: 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLN 143 + + CIYCG C ACP A E A +E + + + Sbjct: 64 EDGS------REFHYNPYLCIYCGECVRACPK-AGCLIQVEEMAPPATEEEIPNWDEIEK 116 Query: 144 NGDRWESEIVRNIVT 158 + + ++ Sbjct: 117 EAEESKKRWLKARKK 131 >gi|226361046|ref|YP_002778824.1| ferredoxin--NADP(+) reductase [Rhodococcus opacus B4] gi|226239531|dbj|BAH49879.1| putative ferredoxin--NADP(+) reductase [Rhodococcus opacus B4] Length = 553 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 3/59 (5%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C C + CP I R +T ID CI CG C +ACPVDAI Sbjct: 7 QACCNDASCVSACPVNCIHPTPEERE---FAQTEMLHIDPETCIDCGACVDACPVDAIF 62 >gi|15896602|ref|NP_349951.1| nitroreductase family protein [Clostridium acetobutylicum ATCC 824] gi|15026443|gb|AAK81291.1|AE007833_4 Nitroreductase family protein fused to ferredoxin domain [Clostridium acetobutylicum ATCC 824] gi|325510763|gb|ADZ22399.1| Nitroreductase family protein fused to ferredoxin domain [Clostridium acetobutylicum EA 2018] Length = 273 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 16/103 (15%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 E+CI C C C + I I G I+ CI CG C CP Sbjct: 1 MMTVDIEKCIGCGKCVKDCFPKDIEIVDGKA-----------KINNETCIKCGHCIAVCP 49 Query: 115 VDAIVEGPNFEFA---TETRQELYYDKERLLNNGDRWESEIVR 154 ++A+ +++ + ++E D ++L+ N ++ I + Sbjct: 50 MNAVS-TDDYDMSEVKEYNKEEFSVDADKLM-NFIKFRRTIRQ 90 >gi|320353865|ref|YP_004195204.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein [Desulfobulbus propionicus DSM 2032] gi|320122367|gb|ADW17913.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfobulbus propionicus DSM 2032] Length = 443 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 37/101 (36%), Gaps = 17/101 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RC C LC CP QAI +E ++ R C+ CG+C CP A+ Sbjct: 288 DSSRCQGCGLCAQACPIQAIWMEPANDPARPAKKIAR---IGSFCLGCGVCALRCPTGAL 344 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 RQ+ E D +E I++ + D Sbjct: 345 KLHE--------RQQQVVHPE------DSFERVILQALERD 371 Score = 40.9 bits (94), Expect = 0.056, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 18/31 (58%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 +D +C CGLC +ACP+ AI P + A Sbjct: 286 QVDSSRCQGCGLCAQACPIQAIWMEPANDPA 316 >gi|310826466|ref|YP_003958823.1| NADH dehydrogenase (quinone) [Eubacterium limosum KIST612] gi|308738200|gb|ADO35860.1| NADH dehydrogenase (quinone) [Eubacterium limosum KIST612] Length = 599 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 29/81 (35%), Positives = 36/81 (44%), Gaps = 13/81 (16%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 +EK + R L Y EE+C C +C CP AIT E + Sbjct: 529 YEKRCPAGVCRN---LLNYVIDEEKCKGCGICAKKCPGDAITGEKKKP----------HV 575 Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID KC+ CG C EACP +AI Sbjct: 576 IDAAKCVKCGACIEACPFNAI 596 Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats. Identities = 15/40 (37%), Positives = 18/40 (45%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 I R + Y ID KC CG+C + CP DAI Sbjct: 527 HIYEKRCPAGVCRNLLNYVIDEEKCKGCGICAKKCPGDAI 566 >gi|60683111|ref|YP_213255.1| putative iron hydrogenase [Bacteroides fragilis NCTC 9343] gi|60494545|emb|CAH09344.1| putative iron hydrogenase [Bacteroides fragilis NCTC 9343] Length = 489 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 6/68 (8%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112 + CI+C C CP AI P + + D ID KCIYCG C A Sbjct: 148 DHDACISCGKCHQSCPYHAIVFIPVPCEEACPVKAISKDENGIEHIDESKCIYCGKCLNA 207 Query: 113 CPVDAIVE 120 CP AI E Sbjct: 208 CPFGAIFE 215 Score = 40.5 bits (93), Expect = 0.081, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 31/97 (31%), Gaps = 12/97 (12%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------------ITIESGPR 85 E S S R + C+ + C + + P+ Sbjct: 75 DELTSLSEYARQALERKNKQKENILCVIDEACSSCVQVNYEVTNLCRGCVARSCYMNCPK 134 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 R+ + ID CI CG C ++CP AIV P Sbjct: 135 DAIRFRKNGQAKIDHDACISCGKCHQSCPYHAIVFIP 171 >gi|331697100|ref|YP_004333339.1| molybdopterin oxidoreductase Fe4S4 region [Pseudonocardia dioxanivorans CB1190] gi|326951789|gb|AEA25486.1| molybdopterin oxidoreductase Fe4S4 region [Pseudonocardia dioxanivorans CB1190] Length = 316 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 29/89 (32%), Gaps = 8/89 (8%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK----CIYCGLCQE 111 Y RCI C C C A + G + + D C+YCG C Sbjct: 176 YVRDYSRCILCYKCVKACGTDAQFTFAISAAGRGFDARIATEFDAELPDSACVYCGNCIG 235 Query: 112 ACPVDAIVEGPNFEFATETRQELYYDKER 140 CP A+ E R+ +D E Sbjct: 236 VCPTGALKSVREHEL----READDWDPEE 260 >gi|296242044|ref|YP_003649531.1| dihydroorotate dehydrogenase family protein [Thermosphaera aggregans DSM 11486] gi|296094628|gb|ADG90579.1| dihydroorotate dehydrogenase family protein [Thermosphaera aggregans DSM 11486] Length = 403 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 6/62 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E++CI C C+ +C A+ +E G +R D KC CGLC CP AI Sbjct: 346 DEKKCIGCGFCQQVCDYDAVHVEE----SGGGKRLAVVD--RTKCYGCGLCTSVCPTRAI 399 Query: 119 VE 120 Sbjct: 400 HF 401 >gi|257785126|ref|YP_003180343.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Atopobium parvulum DSM 20469] gi|257473633|gb|ACV51752.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Atopobium parvulum DSM 20469] Length = 1184 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 32/150 (21%), Positives = 51/150 (34%), Gaps = 29/150 (19%) Query: 31 KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ-------------- 76 K ++ FE G+ + RG + N E+CI C C +CP Sbjct: 666 KNHVDGQFELGAAAYEKRGIAVVVPEWN-VEKCIQCNQCAYVCPHAVIRPFVLTDEEVAA 724 Query: 77 --AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE- 133 A + I + C C C CP DA+ P E E++QE Sbjct: 725 APAQSQFKDAVGPKAKGYKFEIAISQLDCTGCSNCVYICPADALTMKPIEE--QESKQEI 782 Query: 134 ------LYYDKERLLNN---GDRWESEIVR 154 +K L+ N G +++ ++ Sbjct: 783 FDYAVNHVSEKTELVANNVKGSQFKKPLLE 812 >gi|226308457|ref|YP_002768417.1| ferredoxin--NADP(+) reductase [Rhodococcus erythropolis PR4] gi|226187574|dbj|BAH35678.1| probable ferredoxin--NADP(+) reductase [Rhodococcus erythropolis PR4] Length = 560 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 3/65 (4%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C C +CP I T ID CI CG C + CPV+AI Sbjct: 7 QPCCNDASCVDVCPVNCIHPTPDEAP---FATTEMLYIDPDTCIDCGACVDECPVEAIFP 63 Query: 121 GPNFE 125 + Sbjct: 64 DNELD 68 >gi|126437798|ref|YP_001073489.1| putative glutamate synthase (NADPH) small subunit [Mycobacterium sp. JLS] gi|126237598|gb|ABO00999.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Mycobacterium sp. JLS] Length = 558 Score = 55.5 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 8/62 (12%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C C CP AI + Y+ +C CG C E CPV AI Sbjct: 504 NCFECDGCYGACPEDAIIKVAEGHHG--------YEFVYDRCTGCGACFEQCPVHAIEML 555 Query: 122 PN 123 P Sbjct: 556 PE 557 >gi|301164623|emb|CBW24182.1| putative iron hydrogenase [Bacteroides fragilis 638R] Length = 489 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 6/68 (8%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112 + CI+C C CP AI P + + D ID KCIYCG C A Sbjct: 148 DHDACISCGKCHQSCPYHAIVFIPVPCEEACPVKAISKDENGIEHIDESKCIYCGKCLNA 207 Query: 113 CPVDAIVE 120 CP AI E Sbjct: 208 CPFGAIFE 215 Score = 42.4 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 30/97 (30%), Gaps = 12/97 (12%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------------ITIESGPR 85 E S R + C+ + C + + P+ Sbjct: 75 DELTPLSEYARQALERKNKQKENILCVIDEACSSCVQVNYEVTNLCRGCVARSCYMNCPK 134 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 R+ + ID CI CG C ++CP AIV P Sbjct: 135 DAIRFRKNGQAKIDHDACISCGKCHQSCPYHAIVFIP 171 >gi|53715176|ref|YP_101168.1| putative hydrogenase [Bacteroides fragilis YCH46] gi|253566311|ref|ZP_04843765.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|265767004|ref|ZP_06094833.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|52218041|dbj|BAD50634.1| putative hydrogenase [Bacteroides fragilis YCH46] gi|251945415|gb|EES85853.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|263253381|gb|EEZ24857.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 489 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 6/68 (8%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112 + CI+C C CP AI P + + D ID KCIYCG C A Sbjct: 148 DHDACISCGKCHQSCPYHAIVFIPVPCEEACPVKAISKDENGIEHIDESKCIYCGKCLNA 207 Query: 113 CPVDAIVE 120 CP AI E Sbjct: 208 CPFGAIFE 215 Score = 42.4 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 30/97 (30%), Gaps = 12/97 (12%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------------ITIESGPR 85 E S R + C+ + C + + P+ Sbjct: 75 DELTPLSEYARQALERKNKQKENILCVIDEACSSCVQVNYEVTNLCRGCVARSCYMNCPK 134 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 R+ + ID CI CG C ++CP AIV P Sbjct: 135 DAIRFRKNGQAKIDHDACISCGKCHQSCPYHAIVFIP 171 >gi|220918887|ref|YP_002494191.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Anaeromyxobacter dehalogenans 2CP-1] gi|219956741|gb|ACL67125.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Anaeromyxobacter dehalogenans 2CP-1] Length = 259 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 36/107 (33%), Gaps = 11/107 (10%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 T+ +P RFRG + A E+ P Sbjct: 15 TVAFPDGPPRFPARFRGRPVVDPSRCEAGC-----------AGCAGCAEACPTEAILDPG 63 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139 T +D+ +C +CG C ACP AI + A TR+ L ++ Sbjct: 64 TATMRVDLGRCTFCGDCVTACPPGAIRFTGDHRLAARTREALVVSRD 110 >gi|256026642|ref|ZP_05440476.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. D11] gi|289764638|ref|ZP_06524016.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. D11] gi|289716193|gb|EFD80205.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. D11] Length = 1188 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 38/120 (31%), Gaps = 20/120 (16%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT----IESGPRCHDGTRRT 93 FE G+ + RG N ++CI C C +CP AI E T Sbjct: 677 FENGTAAFEKRGVAVNVPIWN-LDKCIECNQCSYVCPHAAIRAFLITEEEKAASPVEFAT 735 Query: 94 V------------RYDIDMIKCIYCGLCQEACPVDAIVEGPN---FEFATETRQELYYDK 138 R + + C CG C CP A+ P E + + Y K Sbjct: 736 KKANGKGLEGLTYRIQVTPLDCTGCGSCANVCPAKALDMEPIAVALENHEDEKASYIYSK 795 >gi|237745305|ref|ZP_04575786.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. 7_1] gi|229432534|gb|EEO42746.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. 7_1] Length = 1188 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 38/120 (31%), Gaps = 20/120 (16%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT----IESGPRCHDGTRRT 93 FE G+ + RG N ++CI C C +CP AI E T Sbjct: 677 FENGTAAFEKRGVAVNVPIWN-LDKCIECNQCSYVCPHAAIRAFLITEEEKAASPVEFAT 735 Query: 94 V------------RYDIDMIKCIYCGLCQEACPVDAIVEGPN---FEFATETRQELYYDK 138 R + + C CG C CP A+ P E + + Y K Sbjct: 736 KKANGKGLEGLTYRIQVTPLDCTGCGSCANVCPAKALDMEPIAVALENHEDEKASYIYSK 795 >gi|108772248|gb|ABG10970.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Mycobacterium sp. MCS] Length = 545 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 8/62 (12%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C C CP AI + Y+ +C CG C E CPV AI Sbjct: 490 NCFECDGCYGACPEDAIIKVAEGHHG--------YEFVYDRCTGCGACFEQCPVHAIEML 541 Query: 122 PN 123 P Sbjct: 542 PE 543 >gi|222053901|ref|YP_002536263.1| nitrite and sulphite reductase 4Fe-4S region [Geobacter sp. FRC-32] gi|221563190|gb|ACM19162.1| nitrite and sulphite reductase 4Fe-4S region [Geobacter sp. FRC-32] Length = 315 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 31/83 (37%), Gaps = 10/83 (12%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 PF+ ++ G + CI+C LC C AI + + + Sbjct: 146 CPFDCPKSATNDVGFQGAIWPELHADECISCGLCAKSCTEGAIAMGADGKPEF------- 198 Query: 96 YDIDMIKCIYCGLCQEACPVDAI 118 + CIYCG C + CP +A Sbjct: 199 ---NAAACIYCGDCVKVCPTEAW 218 Score = 35.5 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 7/59 (11%) Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG----PNFEFA 127 CP + G + + ++ +CI CGLC ++C AI G P F A Sbjct: 146 CPFDCPKSATN---DVGFQGAIWPELHADECISCGLCAKSCTEGAIAMGADGKPEFNAA 201 >gi|254304390|ref|ZP_04971748.1| pyruvate synthase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324582|gb|EDK89832.1| pyruvate synthase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 1190 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 36/112 (32%), Gaps = 18/112 (16%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI----------------TIE 81 FE G+ + RG N ++CI C C +CP AI Sbjct: 679 FENGTAAFEKRGVAVDVPIWN-IDKCIECNQCAYVCPHAAIRAFLITEEEKTASPIEFTT 737 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 + R + + C CG C CP A+ P A E ++ Sbjct: 738 KKANGKGLENLSYRIQVTPLDCTGCGSCANVCPAKALDMNPI-AVALENHED 788 >gi|296328475|ref|ZP_06870995.1| pyruvate:ferredoxin oxidoreductase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296154381|gb|EFG95179.1| pyruvate:ferredoxin oxidoreductase [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 1190 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 36/112 (32%), Gaps = 18/112 (16%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI----------------TIE 81 FE G+ + RG N ++CI C C +CP AI Sbjct: 679 FENGTAAFEKRGVAVNVPIWN-LDKCIECNQCAYVCPHAAIRAFLITDEEKAASPVEFAT 737 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 T R + + C CG C CP A+ P A E ++ Sbjct: 738 KKANGKGLEDLTYRIQVTPLDCTGCGSCANVCPAKALDMNPI-AVALENHED 788 >gi|237747483|ref|ZP_04577963.1| molybdopterin oxidoreductase [Oxalobacter formigenes HOxBLS] gi|229378834|gb|EEO28925.1| molybdopterin oxidoreductase [Oxalobacter formigenes HOxBLS] Length = 701 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 20/58 (34%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI C LCE C G + KCI CG C CP AI Sbjct: 565 DICIGCGLCELACIEVGAEALKMVETKGGRMVFKDFTTPAEKCIGCGACTSVCPTGAI 622 >gi|291518661|emb|CBK73882.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [Butyrivibrio fibrisolvens 16/4] Length = 1177 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 33/108 (30%), Gaps = 16/108 (14%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES--------------- 82 FE G+ + RG E+CI C C +C I Sbjct: 673 FELGAAAYEKRGTAVTVPTW-DPEKCIQCNQCAFVCSHATIRPYMLSEDEVKAAPANIKL 731 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 + + + C+ CG C CPV AI P + A E Sbjct: 732 ADTKPKASEYKYTMSVSPLDCMGCGECTTVCPVGAITMVPQADEADEQ 779 >gi|260495498|ref|ZP_05815624.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Fusobacterium sp. 3_1_33] gi|260197035|gb|EEW94556.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Fusobacterium sp. 3_1_33] Length = 1188 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 38/120 (31%), Gaps = 20/120 (16%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT----IESGPRCHDGTRRT 93 FE G+ + RG N ++CI C C +CP AI E T Sbjct: 677 FENGTAAFEKRGVAVNVPIWN-LDKCIECNQCSYVCPHAAIRAFLITEEEKAASPVEFAT 735 Query: 94 V------------RYDIDMIKCIYCGLCQEACPVDAIVEGPN---FEFATETRQELYYDK 138 R + + C CG C CP A+ P E + + Y K Sbjct: 736 KKANGKGLEGLTYRIQVTPLDCTGCGSCANVCPAKALDMEPIAVALENHEDEKASYIYSK 795 >gi|222099246|ref|YP_002533814.1| Glutamate synthase (NADPH) GltB2 subunit [Thermotoga neapolitana DSM 4359] gi|221571636|gb|ACM22448.1| Glutamate synthase (NADPH) GltB2 subunit [Thermotoga neapolitana DSM 4359] Length = 507 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 30/92 (32%), Gaps = 13/92 (14%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R A + +CI C C +C A + KC+ C Sbjct: 4 RKVPAEFVVERDDYKCIRCLACVRVCSYGANYYDENANRVYTENY---------KCVGCH 54 Query: 108 LCQEACPVDAIVE-GPNFE---FATETRQELY 135 C+ CP +AI NF+ A T + L Sbjct: 55 FCEAICPTEAITVRRNNFDIRPLAHWTPEHLI 86 >gi|198275297|ref|ZP_03207828.1| hypothetical protein BACPLE_01456 [Bacteroides plebeius DSM 17135] gi|198271880|gb|EDY96150.1| hypothetical protein BACPLE_01456 [Bacteroides plebeius DSM 17135] Length = 491 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 6/70 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQ 110 ++CI+C +C CP AI P + ID KCIYCG C Sbjct: 147 QIDHDKCISCGICHKSCPYHAIVYIPVPCEEACPVKAISKDEHYIEHIDESKCIYCGKCL 206 Query: 111 EACPVDAIVE 120 ACP AI E Sbjct: 207 NACPFGAIFE 216 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 35/98 (35%), Gaps = 13/98 (13%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIA---CKLCEAI----------CPAQAITIESGP 84 E S R + C+ C C + C A++ + Sbjct: 75 DELTPLSEYARKTLERKERIKENILCVIDEACSSCVQVNYEVSNLCRGCVARSCYMNCPK 134 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 ++T + ID KCI CG+C ++CP AIV P Sbjct: 135 GAVHFNKKTGQAQIDHDKCISCGICHKSCPYHAIVYIP 172 >gi|88603830|ref|YP_504008.1| NADH-plastoquinone oxidoreductase subunit [Methanospirillum hungatei JF-1] gi|88189292|gb|ABD42289.1| Membrane bound hydrogenase subunit mbhN [Methanospirillum hungatei JF-1] Length = 134 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 31/110 (28%), Positives = 48/110 (43%), Gaps = 19/110 (17%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 K TI+ P T ++RG+ CI CK+C +CPA AI Sbjct: 42 EKATIHPP---IPTPVKYRGKIL-----YDRNTCIGCKMCIRVCPANAIEFIPD------ 87 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR--QELYYD 137 T R I + +C++C C + CP D + +F ATE R +++ + Sbjct: 88 ---TKRIRIWVTQCVFCSQCNDICPKDCLHMSSDFLLATEDRFNEDMIVE 134 >gi|317487064|ref|ZP_07945872.1| pyridine nucleotide-disulfide oxidoreductase [Bilophila wadsworthia 3_1_6] gi|316921746|gb|EFV43024.1| pyridine nucleotide-disulfide oxidoreductase [Bilophila wadsworthia 3_1_6] Length = 767 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 26/95 (27%), Gaps = 8/95 (8%) Query: 37 PFEKGSTSPRFR--------GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88 P EK L +RC++C C E Sbjct: 669 PVEKKPVPSGQLSTAYFTRCPHGELPAANRDFDRCVSCGTCRDCRMCLESCPEGAISRET 728 Query: 89 GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 RY D +CI CG+C CP PN Sbjct: 729 LAGGAYRYVSDPDRCIGCGICSGVCPCGIWTMHPN 763 >gi|302381092|ref|ZP_07269552.1| pyruvate synthase [Finegoldia magna ACS-171-V-Col3] gi|302311139|gb|EFK93160.1| pyruvate synthase [Finegoldia magna ACS-171-V-Col3] Length = 1226 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 42/139 (30%), Gaps = 27/139 (19%) Query: 28 FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA------------ 75 FK + +P TS + AL ++CI C C +CP Sbjct: 657 FKDRANGEFP---MGTSAYEKRCIALNVPEWQMDKCIQCNQCAYVCPHAVIRPFLLNEED 713 Query: 76 --QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLCQEACP--VDAIVEGPNFEFATE 129 A + + + I C CG C + CP A++ P E Sbjct: 714 RKNAPETFESKKAVGKGFEDLTFRIQVSPADCTGCGNCADVCPAKEKALIMKPFEEQHIA 773 Query: 130 TRQELYY------DKERLL 142 + Y KE L+ Sbjct: 774 QKDNWTYAVEKVGYKEDLM 792 >gi|167040762|ref|YP_001663747.1| NADH dehydrogenase (quinone) [Thermoanaerobacter sp. X514] gi|256750972|ref|ZP_05491855.1| NADH dehydrogenase (quinone) [Thermoanaerobacter ethanolicus CCSD1] gi|300914800|ref|ZP_07132116.1| NADH dehydrogenase [Thermoanaerobacter sp. X561] gi|307723966|ref|YP_003903717.1| NADH dehydrogenase (quinone) [Thermoanaerobacter sp. X513] gi|166855002|gb|ABY93411.1| NADH dehydrogenase (quinone) [Thermoanaerobacter sp. X514] gi|256750082|gb|EEU63103.1| NADH dehydrogenase (quinone) [Thermoanaerobacter ethanolicus CCSD1] gi|300889735|gb|EFK84881.1| NADH dehydrogenase [Thermoanaerobacter sp. X561] gi|307581027|gb|ADN54426.1| NADH dehydrogenase (quinone) [Thermoanaerobacter sp. X513] Length = 596 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 15/97 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 +RY F+ + + ++ AL R+ ++C C +C CP AI+ ++ Sbjct: 513 TIRY-FRDEYEAHIKEKRCPAGVC----QALLRFYIAPDKCKGCGICAKNCPVNAISGKT 567 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 Y ID KCI CG C E CP AI Sbjct: 568 KEP----------YVIDQDKCIKCGTCIEKCPFGAIY 594 Score = 42.4 bits (98), Expect = 0.023, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 8/62 (12%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 I+ + +R+ I KC CG+C + CPV+AI + +T++ D+ Sbjct: 524 HIKEKRCPAGVCQALLRFYIAPDKCKGCGICAKNCPVNAI--------SGKTKEPYVIDQ 575 Query: 139 ER 140 ++ Sbjct: 576 DK 577 >gi|91772347|ref|YP_565039.1| formylmethanofuran dehydrogenase, subunit F [Methanococcoides burtonii DSM 6242] gi|91711362|gb|ABE51289.1| Molybdenum formylmethanofuran dehydrogenase subunit F [Methanococcoides burtonii DSM 6242] Length = 340 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 32/74 (43%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C+ C +CE ICP AI R ID C++CG C E CP +AI Sbjct: 100 NDNCVHCGVCEQICPQGAIETRQWLANDGSARIDGETIIDQETCVHCGWCSEVCPTNAIT 159 Query: 120 EGPNFEFATETRQE 133 FE E ++ Sbjct: 160 VQKPFEGTWERAED 173 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 4/87 (4%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 + E T+ + + E+ C AC+ C +CP A+ P G R Sbjct: 144 VHCGWCSEVCPTNAITVQKPFEGTWERAEDVCQACRTCVDVCPCNALF---NPEWAPGER 200 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAI 118 CIYCG C +CPV+AI Sbjct: 201 VDKVAQ-RPDACIYCGACAVSCPVNAI 226 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 1/64 (1%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 E+CI C C +CP + I S G DI CI CG+C + CP A+ Sbjct: 18 PEKCIGCGTCTMVCPKDTLIIGSVGPVARGLINKEYLDIR-DTCITCGMCTKVCPTGALE 76 Query: 120 EGPN 123 + Sbjct: 77 MRED 80 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 32/68 (47%), Gaps = 3/68 (4%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRC---HDGTRRTVRYDIDMIKCIYCGLCQ 110 + Y + + CI C +C +CP A+ + + + ++ C++CG+C+ Sbjct: 51 KEYLDIRDTCITCGMCTKVCPTGALEMREDGKPVCDENFLCSSLAPTTVNDNCVHCGVCE 110 Query: 111 EACPVDAI 118 + CP AI Sbjct: 111 QICPQGAI 118 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 9/71 (12%) Query: 59 GEERCIACKLCEAICPAQAIT---------IESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 E+ C+ C C +CP A + + + R +D C CG C Sbjct: 264 DEDACLGCGNCVIMCPVNAKSSKDLAAGSLNDLDEKPLLEVRNGTVKVVDQEACGSCGAC 323 Query: 110 QEACPVDAIVE 120 CPV AI Sbjct: 324 ALICPVSAIWL 334 Score = 38.9 bits (89), Expect = 0.26, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 17/75 (22%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK----------------- 102 + CI C C CP AI ++ D ++ V + K Sbjct: 208 PDACIYCGACAVSCPVNAIDVQKTAIVPDMNKKAVFEKKLLNKPSATPVLTSVLVTDEDA 267 Query: 103 CIYCGLCQEACPVDA 117 C+ CG C CPV+A Sbjct: 268 CLGCGNCVIMCPVNA 282 Score = 38.2 bits (87), Expect = 0.40, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 11/77 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E C+ C C +CP AIT++ ++ C C C + CP +A+ Sbjct: 139 DQETCVHCGWCSEVCPTNAITVQK--------PFEGTWERAEDVCQACRTCVDVCPCNAL 190 Query: 119 VEGPNFEFATETRQELY 135 N E+A R + Sbjct: 191 F---NPEWAPGERVDKV 204 >gi|255011300|ref|ZP_05283426.1| putative hydrogenase [Bacteroides fragilis 3_1_12] gi|313149111|ref|ZP_07811304.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313137878|gb|EFR55238.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 489 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 6/68 (8%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112 + CI+C C CP AI P + + D ID KCIYCG C A Sbjct: 148 DHDACISCGKCHQSCPYHAIVFIPVPCEEACPVKAISKDENGIEHIDENKCIYCGKCLNA 207 Query: 113 CPVDAIVE 120 CP AI E Sbjct: 208 CPFGAIFE 215 Score = 41.2 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 30/97 (30%), Gaps = 12/97 (12%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------------ITIESGPR 85 E S R + C+ + C + + P+ Sbjct: 75 DELTPLSEYARHALERKNEQKENILCVIDEACSSCVQVNYEITNLCRGCVARSCYMNCPK 134 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 R+ + ID CI CG C ++CP AIV P Sbjct: 135 DAIRFRKNGQAKIDHDACISCGKCHQSCPYHAIVFIP 171 >gi|322419743|ref|YP_004198966.1| nitrite and sulphite reductase 4Fe-4S region [Geobacter sp. M18] gi|320126130|gb|ADW13690.1| nitrite and sulphite reductase 4Fe-4S region [Geobacter sp. M18] Length = 316 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 10/83 (12%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 PF+ ++ G + CI+C LC C A+++ + Sbjct: 142 CPFDCPKSAINDVGFQGAVWPKLDADGCISCGLCAKSCAEGALSMGPDNKPLF------- 194 Query: 96 YDIDMIKCIYCGLCQEACPVDAI 118 D KCIYCG C + CP A Sbjct: 195 ---DASKCIYCGDCIKVCPTGAW 214 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 3/55 (5%) Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 C A CP G + V +D CI CGLC ++C A+ GP+ Sbjct: 138 CFAGCPFDCP---KSAINDVGFQGAVWPKLDADGCISCGLCAKSCAEGALSMGPD 189 >gi|220929108|ref|YP_002506017.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium cellulolyticum H10] gi|219999436|gb|ACL76037.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium cellulolyticum H10] Length = 266 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 33/124 (26%), Positives = 52/124 (41%), Gaps = 20/124 (16%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T+ YP K + S G +C CK C ++CP A+ + + Sbjct: 14 VTVEYPK-KNTKSTYITGIPEF-----DYSKCTRCKKCISVCPTGAVVMTDKD-----GQ 62 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL------YYDKERLLNNG 145 R D++ +CI+C C+EAC A+ FE A ++R+ L DK+ NG Sbjct: 63 RGKFPDVNADECIFCRFCEEACSNQAVSLSNKFELAQKSRELLRAAPLYVGDKD---VNG 119 Query: 146 DRWE 149 +E Sbjct: 120 IDYE 123 Score = 40.5 bits (93), Expect = 0.088, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 21/56 (37%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + + + +T+E + T T + D KC C C CP A+V Sbjct: 3 NIVKKLVQHGTVTVEYPKKNTKSTYITGIPEFDYSKCTRCKKCISVCPTGAVVMTD 58 >gi|119716585|ref|YP_923550.1| putative glutamate synthase (NADPH) small subunit [Nocardioides sp. JS614] gi|119537246|gb|ABL81863.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Nocardioides sp. JS614] Length = 544 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 25/62 (40%), Gaps = 8/62 (12%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C +C C +CP AIT P Y ID+ C CGLC CP AI Sbjct: 489 NCFSCDNCFGVCPDNAITKTGDPDTP--------YLIDLDYCKGCGLCAAECPAGAIRMA 540 Query: 122 PN 123 P Sbjct: 541 PE 542 >gi|288940990|ref|YP_003443230.1| DsrL protein [Allochromatium vinosum DSM 180] gi|10120476|gb|AAG13082.1| DsrL [Allochromatium vinosum DSM 180] gi|288896362|gb|ADC62198.1| DsrL [Allochromatium vinosum DSM 180] Length = 654 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 20/59 (33%), Gaps = 4/59 (6%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C C CP A+ G Y KCI C +C + CP I G Sbjct: 597 CFECDNCVIFCPQDAVFRVDKGSRTTGRYVDTDY----AKCIGCHICADVCPTGYIKMG 651 >gi|121535881|ref|ZP_01667679.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus carboxydivorans Nor1] gi|121305546|gb|EAX46490.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus carboxydivorans Nor1] Length = 368 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 11/71 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + +CI C C A+CP AIT+ I + KCI CG C CPV A+ Sbjct: 191 DQAKCIGCAKCAAVCPENAITVSDKKAS-----------IAVDKCIGCGECLTVCPVKAV 239 Query: 119 VEGPNFEFATE 129 + A Sbjct: 240 GMDWATDLAVF 250 Score = 40.5 bits (93), Expect = 0.091, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 3/61 (4%) Query: 65 ACKLCEAICPAQAIT---IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 K E AI + P + + + +D KCI C C CP +AI Sbjct: 154 HFKGHEMAGFGGAIKNLAMGGAPAIGKKEQHSPKIMVDQAKCIGCAKCAAVCPENAITVS 213 Query: 122 P 122 Sbjct: 214 D 214 >gi|256544643|ref|ZP_05472015.1| periplasmic [Fe] hydrogenase 1 [Anaerococcus vaginalis ATCC 51170] gi|256399532|gb|EEU13137.1| periplasmic [Fe] hydrogenase 1 [Anaerococcus vaginalis ATCC 51170] Length = 489 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 7/77 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112 +++CI C C CP AI P + ++ D ID KC+ CG C A Sbjct: 133 DQDKCIKCGKCVEACPYNAIAHTKRPCAESCGVKAIKSDKLGRAEIDDDKCVACGRCITA 192 Query: 113 CPVDAI-VEGPNFEFAT 128 CP AI + ++ A Sbjct: 193 CPFGAISDKTEIYQLAK 209 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 5/65 (7%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-----IDMIKCIYCGLCQEACPVDA 117 C AC + P + + + Y ID KCI CG C EACP +A Sbjct: 92 CEACPENRVEVTNTCRACIAHPCVNVCPKNAITYTSKGSIIDQDKCIKCGKCVEACPYNA 151 Query: 118 IVEGP 122 I Sbjct: 152 IAHTK 156 >gi|225378477|ref|ZP_03755698.1| hypothetical protein ROSEINA2194_04145 [Roseburia inulinivorans DSM 16841] gi|225209700|gb|EEG92054.1| hypothetical protein ROSEINA2194_04145 [Roseburia inulinivorans DSM 16841] Length = 1181 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 33/108 (30%), Gaps = 16/108 (14%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES--------------- 82 FE+G+++ RG +CI C C +C I Sbjct: 673 FEQGASAYEKRGTAVTVPTW-DAAKCIQCNQCAFVCSHATIRPFMLSEDEVKAAPANIKL 731 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 + + + C+ CG C CPV AI P A E Sbjct: 732 ADTKPKASEYKYTMSVSPLDCMGCGECITVCPVGAIEMVPQESQAEEQ 779 >gi|284162672|ref|YP_003401295.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Archaeoglobus profundus DSM 5631] gi|284012669|gb|ADB58622.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Archaeoglobus profundus DSM 5631] Length = 147 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 33/131 (25%), Positives = 49/131 (37%), Gaps = 16/131 (12%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNG 59 M + + + S LK + A F ++ + T+ YP E RG Sbjct: 1 MVVVKRSFSK--LKGHINAIFEAVKEVVRPSTITVQYPKEIR-FYENIRGYI-----QVE 52 Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 C+ C C ICPA AI + + +G ID KCI+C C + CP A+ Sbjct: 53 AISCLGCARCARICPANAIIM----KNVNGRYYPT---IDFGKCIFCHFCIDVCPTGALR 105 Query: 120 EGPNFEFATET 130 + A Sbjct: 106 NTTVHDLAFNN 116 >gi|307594821|ref|YP_003901138.1| pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta [Vulcanisaeta distributa DSM 14429] gi|307550022|gb|ADN50087.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Vulcanisaeta distributa DSM 14429] Length = 117 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRC-HDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 ++ CI C+ C CP AI P DG + + Y+ID C CG+C CPV A Sbjct: 48 NQDLCIRCRTCWTYCPEPAILELDKPYITKDGRKYDITYEIDYDHCKGCGICAHECPVKA 107 Query: 118 IVEGPN 123 I P Sbjct: 108 ITMIPE 113 >gi|226304296|ref|YP_002764254.1| ferredoxin--NADP(+) reductase [Rhodococcus erythropolis PR4] gi|226183411|dbj|BAH31515.1| putative ferredoxin--NADP(+) reductase [Rhodococcus erythropolis PR4] Length = 563 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 29/95 (30%), Positives = 37/95 (38%), Gaps = 12/95 (12%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C C A+CP I RT ID CI CG C +ACP+DAIV Sbjct: 7 QPCCNDASCVAVCPVNCIHPTPDESD---YARTEMLYIDPNTCIDCGACADACPIDAIVP 63 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRN 155 + ++ Y L N D +E RN Sbjct: 64 D-----SDLDEGDMPY----LEINADYFEDPKNRN 89 >gi|169824082|ref|YP_001691693.1| pyruvate/ferredoxin oxidoreductase [Finegoldia magna ATCC 29328] gi|303235258|ref|ZP_07321876.1| pyruvate synthase [Finegoldia magna BVS033A4] gi|167830887|dbj|BAG07803.1| pyruvate/ferredoxin oxidoreductase [Finegoldia magna ATCC 29328] gi|302493572|gb|EFL53360.1| pyruvate synthase [Finegoldia magna BVS033A4] Length = 1226 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 42/139 (30%), Gaps = 27/139 (19%) Query: 28 FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA------------ 75 FK + +P TS + AL ++CI C C +CP Sbjct: 657 FKDRANGEFP---MGTSAYEKRCIALNVPEWQMDKCIQCNQCAYVCPHAVIRPFLLNEED 713 Query: 76 --QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLCQEACP--VDAIVEGPNFEFATE 129 A + + + I C CG C + CP A++ P E Sbjct: 714 RKNAPETFESKKAVGKGFEDLTFRIQVSPADCTGCGNCADVCPAKEKALIMKPFEEQHIA 773 Query: 130 TRQELYY------DKERLL 142 + Y KE L+ Sbjct: 774 QKDNWTYAVEKVGYKEDLM 792 >gi|77920193|ref|YP_358008.1| glutamate synthase subunit alpha-like [Pelobacter carbinolicus DSM 2380] gi|77546276|gb|ABA89838.1| glutamate synthase (NADPH) GltB3 subunit [Pelobacter carbinolicus DSM 2380] Length = 771 Score = 55.1 bits (131), Expect = 3e-06, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 28/81 (34%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 K S P+ RG + + +RCI+C C E + T Y D Sbjct: 686 KESFMPQNRGRFRVEDACSEVDRCISCGSCRDCTLCLETCPEGAIVREEKPDGTFEYVSD 745 Query: 100 MIKCIYCGLCQEACPVDAIVE 120 CI CGLC CP Sbjct: 746 EKYCIGCGLCAGICPCGIWQM 766 >gi|282165308|ref|YP_003357693.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Methanocella paludicola SANAE] gi|282157622|dbj|BAI62710.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Methanocella paludicola SANAE] Length = 196 Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 37/105 (35%), Gaps = 14/105 (13%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + AF FF+ T++ G T+ FR C C C C + Sbjct: 7 LKAFGDLALNFFRKPVTVD--ESYGFTAENFRWLPRRNAD-----LCTGCGACNERCSSG 59 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 A ++ ID ++CI+CG C + CP A+ Sbjct: 60 ATSLTDADGE-------RTVSIDGLRCIFCGRCADVCPERALELT 97 >gi|297625387|ref|YP_003687150.1| Pyruvate synthase/Pyruvate-flavodoxin oxidoreductase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921152|emb|CBL55699.1| Pyruvate synthase/Pyruvate-flavodoxin oxidoreductase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 1255 Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 24/82 (29%), Gaps = 16/82 (19%) Query: 58 NGEERCIACKLCEAICPAQ---AITIESGPRCHDGTRRTVRY-------------DIDMI 101 ++ CI C C +CP A + + Sbjct: 742 WDQDNCIQCGNCAFVCPHGVLRAKYYKPDVLDDAPKSFQAVPLNAAGLPDEMYTLQVFAE 801 Query: 102 KCIYCGLCQEACPVDAIVEGPN 123 C CGLC EACPV I P Sbjct: 802 DCTGCGLCVEACPVHPIGGDPE 823 >gi|164686811|ref|ZP_02210839.1| hypothetical protein CLOBAR_00407 [Clostridium bartlettii DSM 16795] gi|164604201|gb|EDQ97666.1| hypothetical protein CLOBAR_00407 [Clostridium bartlettii DSM 16795] Length = 646 Score = 55.1 bits (131), Expect = 4e-06, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 31/63 (49%), Gaps = 10/63 (15%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E+CI C +C+ +CP I E + ID +C +CG C ACPVDAI Sbjct: 223 EKCIGCGICQRVCPVDCIAGEKKEQR----------RIDYNRCTHCGRCLSACPVDAITA 272 Query: 121 GPN 123 G N Sbjct: 273 GDN 275 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 8/40 (20%) Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140 KCI CG+CQ CPVD I A E +++ D R Sbjct: 223 EKCIGCGICQRVCPVDCI--------AGEKKEQRRIDYNR 254 >gi|330996166|ref|ZP_08320056.1| 4Fe-4S binding domain protein [Paraprevotella xylaniphila YIT 11841] gi|329573670|gb|EGG55261.1| 4Fe-4S binding domain protein [Paraprevotella xylaniphila YIT 11841] Length = 480 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 28/69 (40%), Gaps = 6/69 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQ 110 E+CI+C C +CP AI P + ID KCIYCG C Sbjct: 147 YIDHEKCISCGRCHQVCPYHAIVYIPVPCEEACPVKAISKDEYGVEHIDPEKCIYCGKCL 206 Query: 111 EACPVDAIV 119 ACP AI Sbjct: 207 NACPFGAIF 215 Score = 40.5 bits (93), Expect = 0.083, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 27/71 (38%), Gaps = 12/71 (16%) Query: 54 RRYPNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + C C + C CP AI +S + ID KCI CG C + Sbjct: 112 KINYEVTNLCRGCAARPCYNNCPKDAIHYDSEGKA----------YIDHEKCISCGRCHQ 161 Query: 112 ACPVDAIVEGP 122 CP AIV P Sbjct: 162 VCPYHAIVYIP 172 >gi|257081914|ref|ZP_05576275.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Enterococcus faecalis E1Sol] gi|256989944|gb|EEU77246.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Enterococcus faecalis E1Sol] Length = 1177 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 33/96 (34%), Gaps = 17/96 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96 AL ++C C C +CP AI E G Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYHI 738 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130 + + C CGLC +ACPV AI+ P +E E Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773 >gi|17229403|ref|NP_485951.1| pyruvate flavodoxin dehydrogenase [Nostoc sp. PCC 7120] gi|17131001|dbj|BAB73610.1| pyruvate flavodoxin dehydrogenase [Nostoc sp. PCC 7120] Length = 1187 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 28/100 (28%), Gaps = 24/100 (24%) Query: 58 NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRYDID--MI 101 + CI C C +CP A + D +++ I Sbjct: 688 WDTDVCIQCGKCVMVCPHSVIRSKVYEPEQLENAPSTFKSANAKDHDWHGLKFTIQVAAE 747 Query: 102 KCIYCGLCQEACPV--------DAIVEGPNFEFATETRQE 133 C CG+C + CP AI P R+ Sbjct: 748 DCTGCGICVDVCPAKNKAQPRNKAINMQPQLPLRQAEREN 787 >gi|292491704|ref|YP_003527143.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Nitrosococcus halophilus Nc4] gi|291580299|gb|ADE14756.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Nitrosococcus halophilus Nc4] Length = 557 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 44/122 (36%), Gaps = 17/122 (13%) Query: 20 FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79 L + + F+ P F + C C C ++CPA A+ Sbjct: 399 LRLAVEHLFQQAP-APQPIIPLPAGAPFGEIQV------DRQTCTLCLACVSVCPASAL- 450 Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF-ATETRQELYYDK 138 G R +R+ C+ CG+CQ ACP DAI P + + R+ ++ Sbjct: 451 ------LDGGERPQLRF--IEANCVQCGVCQAACPEDAIALSPRMVYESIRNRETRVLNE 502 Query: 139 ER 140 E Sbjct: 503 EE 504 >gi|75909255|ref|YP_323551.1| ferredoxin (flavodoxin) oxidoreductase [Anabaena variabilis ATCC 29413] gi|90101419|sp|Q3M8N0|NIFJ_ANAVT RecName: Full=Pyruvate-flavodoxin oxidoreductase gi|75702980|gb|ABA22656.1| ferredoxin (flavodoxin) oxidoreductase [Anabaena variabilis ATCC 29413] Length = 1190 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 28/100 (28%), Gaps = 24/100 (24%) Query: 58 NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRYDID--MI 101 + CI C C +CP A + D +++ I Sbjct: 691 WDTDVCIQCGKCVMVCPHSVIRSKVYEPEQLENAPSTFKSANAKDHDWHGLKFTIQVAAE 750 Query: 102 KCIYCGLCQEACP--------VDAIVEGPNFEFATETRQE 133 C CG+C + CP AI P R+ Sbjct: 751 DCTGCGICVDVCPAKNKAQPRKKAINMEPQLPLRQAEREN 790 >gi|16331975|ref|NP_442703.1| pyruvate oxidoreductase [Synechocystis sp. PCC 6803] gi|1709285|sp|P52965|NIFJ_SYNY3 RecName: Full=Putative pyruvate-flavodoxin oxidoreductase gi|1006618|dbj|BAA10774.1| pyruvate oxidoreductase [Synechocystis sp. PCC 6803] Length = 1199 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 28/138 (20%), Positives = 40/138 (28%), Gaps = 33/138 (23%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIE 81 YP R G P+ C+ C C +CP A Sbjct: 666 YPTATTQWEKRNVGHEIPVWDPD---VCVQCGKCVIVCPHAVIRGKVYEEAELANAPVSF 722 Query: 82 SGPRCHDGTRRTVRYDID--MIKCIYCGLCQEACPV--------DAIVEGPNFEFATETR 131 D + ++ I C CG+C + CP AI P + R Sbjct: 723 KFTNAKDHDWQGSKFTIQVAPEDCTGCGICVDVCPAKNKSQPRLRAINMAPQLPLREQER 782 Query: 132 Q--ELYYDKERLLNNGDR 147 + + + D L N DR Sbjct: 783 ENWDFFLD----LPNPDR 796 >gi|319949121|ref|ZP_08023214.1| putative ferredoxin reductase [Dietzia cinnamea P4] gi|319437231|gb|EFV92258.1| putative ferredoxin reductase [Dietzia cinnamea P4] Length = 551 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 29/100 (29%), Positives = 34/100 (34%), Gaps = 7/100 (7%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C A C CP I ID + C+ CG C ACP Sbjct: 1 MPHVITQACCADASCVHACPVNCIHPTPDEPD---FATAEMLYIDPVSCVDCGACVGACP 57 Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVR 154 V AIV P+ E A E L + E L DR R Sbjct: 58 VGAIV--PHTELAPEQHDFLQINAE--LTGDDRPSRPQAR 93 >gi|288940021|ref|YP_003442261.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Allochromatium vinosum DSM 180] gi|288895393|gb|ADC61229.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Allochromatium vinosum DSM 180] Length = 1193 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 29/99 (29%), Gaps = 25/99 (25%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC------ 86 T FEK AL+ E C C C +CP AI + P Sbjct: 676 TGTTRFEKRQL--------ALQLPKWDENLCTQCGKCPLVCPHAAIRAKVYPAALTNGAP 727 Query: 87 -----------HDGTRRTVRYDIDMIKCIYCGLCQEACP 114 V Y I C CGLC E CP Sbjct: 728 ASFKHAAIKGKDFPEGYRVSYQIAPDDCTGCGLCAEVCP 766 >gi|253576872|ref|ZP_04854197.1| pyruvate/ketoisovalerate oxidoreductase [Paenibacillus sp. oral taxon 786 str. D14] gi|251843739|gb|EES71762.1| pyruvate/ketoisovalerate oxidoreductase [Paenibacillus sp. oral taxon 786 str. D14] Length = 343 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 1/65 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI C C+++CP E+G G + ID C C C E CP A+ Sbjct: 265 DTDSCIHCANCDSVCPDLCFVWEAGEDKK-GRPQMFLSGIDYQYCKGCLKCVEICPTGAL 323 Query: 119 VEGPN 123 Sbjct: 324 SMRRE 328 >gi|20089203|ref|NP_615278.1| formylmethanofuran dehydrogenase, subunit F [Methanosarcina acetivorans C2A] gi|19914078|gb|AAM03758.1| formylmethanofuran dehydrogenase, subunit F [Methanosarcina acetivorans C2A] Length = 346 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 1/76 (1%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 E C+ C LCE ICP I + + + +ID C++CG C CPV+AI Sbjct: 106 NENCVHCGLCEDICPQGCIEVTREISGDGSLKLVGKTNIDTECCVHCGWCAAVCPVNAIS 165 Query: 120 EGPNFEFATETRQELY 135 F A TR E Sbjct: 166 VEKPFAGA-WTRDENV 180 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 30/87 (34%), Gaps = 4/87 (4%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 + + + + E C C C +CPA AI + Sbjct: 150 VHCGWCAAVCPVNAISVEKPFAGAWTRDENVCQTCHTCIDVCPANAIFNKKAKSGE---- 205 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAI 118 R + CIYCG C +CPVDAI Sbjct: 206 RVEKITHRPDACIYCGACAVSCPVDAI 232 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 3/66 (4%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRT---VRYDIDMIKCIYCGLCQEACPVDA 117 E C+ C +C +CP A+ + + + T V+ C++CGLC++ CP Sbjct: 64 EECLVCGICARVCPTGALELRQEGKPLNDTSYISKAVKPTSVNENCVHCGLCEDICPQGC 123 Query: 118 IVEGPN 123 I Sbjct: 124 IEVTRE 129 Score = 40.9 bits (94), Expect = 0.060, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 17/78 (21%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRR-----------------TVRYDIDM 100 + + CI C C CP AI + + ++ R + D Sbjct: 212 HRPDACIYCGACAVSCPVDAIDVRKTAILPEMEKKGPLEKKLLDAPVPEALLRTRLETDE 271 Query: 101 IKCIYCGLCQEACPVDAI 118 C+ CG C CPV+A+ Sbjct: 272 AACLGCGNCVIVCPVNAL 289 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 8/63 (12%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E C+ C C A+CP AI++E D C C C + CP + Sbjct: 143 NIDTECCVHCGWCAAVCPVNAISVEKPFAGAW--------TRDENVCQTCHTCIDVCPAN 194 Query: 117 AIV 119 AI Sbjct: 195 AIF 197 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 1/65 (1%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI-DMIKCIYCGLCQEACPVDAI 118 E CI C C CP + + + G ++ +C+ CG+C CP A+ Sbjct: 22 PEICIGCGTCVQACPKGTLAVGAVGVIARGLLDADFLEMTKKEECLVCGICARVCPTGAL 81 Query: 119 VEGPN 123 Sbjct: 82 ELRQE 86 Score = 38.2 bits (87), Expect = 0.35, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 28/95 (29%), Gaps = 9/95 (9%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---------ESGPRCH 87 P EK R E C+ C C +CP A+ + + Sbjct: 248 PLEKKLLDAPVPEALLRTRLETDEAACLGCGNCVIVCPVNALDNRELASGYLNDMDEKAL 307 Query: 88 DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 R ++ C G C CPV+AI Sbjct: 308 LEVRNGKVSVVNQEVCGGDGTCALICPVNAIWLVK 342 >gi|307596042|ref|YP_003902359.1| pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta [Vulcanisaeta distributa DSM 14429] gi|307551243|gb|ADN51308.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Vulcanisaeta distributa DSM 14429] Length = 105 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 1/66 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGP-RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 ++ CI C++C CP AI P G + + Y+ID C CG+C CPV A Sbjct: 37 DQDACIRCRICWMYCPEPAILELKKPYVTKTGKKYDLTYEIDYDHCKGCGICAHECPVKA 96 Query: 118 IVEGPN 123 I P Sbjct: 97 IKMVPE 102 >gi|262201358|ref|YP_003272566.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein [Gordonia bronchialis DSM 43247] gi|262084705|gb|ACY20673.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Gordonia bronchialis DSM 43247] Length = 527 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 3/59 (5%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C + C ++CP I R G + ID CI CG C +ACPVDAI Sbjct: 6 QSCCSDAACVSVCPVNCIHPTPEER---GFGSSDILHIDPEACIDCGACADACPVDAIY 61 >gi|89093291|ref|ZP_01166241.1| 4Fe-4S ferredoxin, iron-sulfur binding [Oceanospirillum sp. MED92] gi|89082587|gb|EAR61809.1| 4Fe-4S ferredoxin, iron-sulfur binding [Oceanospirillum sp. MED92] Length = 349 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 35/158 (22%), Positives = 54/158 (34%), Gaps = 12/158 (7%) Query: 9 SFLFLK---EFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 S++FL +F+ L L + P + FR R G RC Sbjct: 200 SYMFLSILGDFLFGLTLALAMTLRQPFCRICP--MLALHAVFRKLGLARLVKKGTSRCDK 257 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 C LC CP ++S + TR DI + C CG C E CP +++ Sbjct: 258 CGLCAEACPMDIRELQSEFNDVEKTR-----DITLPDCTLCGRCVEFCPDKDVLQLRYLN 312 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + Y+ K + W+ + N+ R Sbjct: 313 IPVFSADPKYFKKRK--KAQKHWDEIKLINLDAGKKVR 348 >gi|332880702|ref|ZP_08448375.1| 4Fe-4S binding domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681336|gb|EGJ54260.1| 4Fe-4S binding domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 480 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 28/69 (40%), Gaps = 6/69 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQ 110 E+CI+C C +CP AI P + ID KCIYCG C Sbjct: 147 YIDHEKCISCGRCHQVCPYHAIVYIPVPCEEACPVKAISKDEYGVEHIDPEKCIYCGKCL 206 Query: 111 EACPVDAIV 119 ACP AI Sbjct: 207 NACPFGAIF 215 Score = 40.5 bits (93), Expect = 0.090, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 27/71 (38%), Gaps = 12/71 (16%) Query: 54 RRYPNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + C C + C CP AI +S + ID KCI CG C + Sbjct: 112 KINYEVTNLCRGCAARPCYNNCPKDAIHYDSEGKA----------YIDHEKCISCGRCHQ 161 Query: 112 ACPVDAIVEGP 122 CP AIV P Sbjct: 162 VCPYHAIVYIP 172 >gi|158522287|ref|YP_001530157.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Desulfococcus oleovorans Hxd3] gi|158511113|gb|ABW68080.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Desulfococcus oleovorans Hxd3] Length = 776 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 6/66 (9%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C +C CP AI+ P Y++D CI CG C ACP Sbjct: 716 NCRDCGICVTACPQSAISRAEKPDSGFA------YEVDETLCIGCGFCAGACPCGVWGLV 769 Query: 122 PNFEFA 127 PN E + Sbjct: 770 PNTELS 775 Score = 34.7 bits (78), Expect = 4.9, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 14/40 (35%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + DG + C CG+C ACP AI Sbjct: 693 YFDPRLTGFDGMDQCGAQCASCGNCRDCGICVTACPQSAI 732 >gi|238923844|ref|YP_002937360.1| pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase, alpha subunit [Eubacterium rectale ATCC 33656] gi|238875519|gb|ACR75226.1| pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase, alpha subunit [Eubacterium rectale ATCC 33656] gi|291524555|emb|CBK90142.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [Eubacterium rectale DSM 17629] gi|291527981|emb|CBK93567.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [Eubacterium rectale M104/1] Length = 1185 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 27/94 (28%), Gaps = 15/94 (15%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAIT---------------IESGPRCHDGTRRTVRY 96 A+ E+CI C C +C I ++ Sbjct: 686 AVTVPQWDPEKCIQCNNCAFVCSHATIRPFLLTDDEVKAAPDNMKVADMKPKAGAYKYTM 745 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 + + C+ CG C CP AI P A E Sbjct: 746 SVSPLDCMGCGECITVCPTAAISMQPQESQAAEQ 779 >gi|332686332|ref|YP_004456106.1| pyruvate-flavodoxin oxidoreductase [Melissococcus plutonius ATCC 35311] gi|332370341|dbj|BAK21297.1| pyruvate-flavodoxin oxidoreductase [Melissococcus plutonius ATCC 35311] Length = 1114 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 34/95 (35%), Gaps = 20/95 (21%) Query: 58 NGEERCIACKLCEAICPAQAIT-----IESGPRCHDGTRR---------TVRYDIDMIKC 103 E C C C +CP AI E DG R + + C Sbjct: 688 WNSEFCTMCNACSFVCPHAAIRPILADQEEMENAPDGFIVKNMRGQDGLMYRIQVSIEDC 747 Query: 104 IYCGLCQEACPV--DAIVEGPNFEFATETRQELYY 136 CGLC EACPV A+ P E ++++ + Sbjct: 748 TGCGLCVEACPVKDKALKMEPI----EEQKEQMIH 778 >gi|257439152|ref|ZP_05614907.1| Fe-hydrogenase large subunit family protein [Faecalibacterium prausnitzii A2-165] gi|257198403|gb|EEU96687.1| Fe-hydrogenase large subunit family protein [Faecalibacterium prausnitzii A2-165] Length = 528 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 34/86 (39%), Gaps = 8/86 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112 +E+CI C C +CP AI P + D ID KC+ CG C Sbjct: 163 DQEKCIKCGRCATVCPYNAIVKTERPCAAACGMGAIHSDELGRAEIDYSKCVSCGQCLVN 222 Query: 113 CPVDAI-VEGPNFEF-ATETRQELYY 136 CP AI +G ++ R + Y Sbjct: 223 CPFGAIADKGQIYQLIQGFNRGDRIY 248 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 12/85 (14%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P R L + + + C+A C +CP +AIT ESG R Sbjct: 113 PLVNVIKFACNRCPEKLVKVSDLCQGCLA-HPCMEVCPKKAITWESG-----------RS 160 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEG 121 ID KCI CG C CP +AIV+ Sbjct: 161 TIDQEKCIKCGRCATVCPYNAIVKT 185 >gi|20093747|ref|NP_613594.1| formylmethanofuran dehydrogenase subunit F, ferredoxin containing [Methanopyrus kandleri AV19] gi|19886647|gb|AAM01524.1| Probable formylmethanofuran dehydrogenase subunit F, ferredoxin containing [Methanopyrus kandleri AV19] Length = 357 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 30/73 (41%), Positives = 38/73 (52%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G+ + EE+CI CK CE CPA AIT+E ++D KC+YCG+ Sbjct: 142 GDLVMGEIEIDEEKCIYCKACEEACPADAITVERPKPSAADPEPEFTIEVDEDKCVYCGV 201 Query: 109 CQEACPVDAIVEG 121 C CPVDAI G Sbjct: 202 CMRTCPVDAIKVG 214 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 32/83 (38%), Gaps = 2/83 (2%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 R R +C AC +CEA CP AI++ P + D Sbjct: 11 EVSPPLLRVVRKGVEERELVINTSKCAACGICEAACPVGAISV--APPSAVVRKGEDPID 68 Query: 98 IDMIKCIYCGLCQEACPVDAIVE 120 +D KC+ CG+C CP D I Sbjct: 69 VDESKCVLCGICAFVCPYDVIQL 91 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 7/74 (9%) Query: 59 GEERCIACKLCEAICPAQA-------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 E++C+ C +C CP A + D+D C+YCG C Sbjct: 192 DEDKCVYCGVCMRTCPVDAIKVGCMVCYGTTRGEIPAKGEVDGSVDVDPSSCVYCGWCGF 251 Query: 112 ACPVDAIVEGPNFE 125 CPVDAI +E Sbjct: 252 VCPVDAIEVIKPYE 265 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 5/65 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E C+ C LC +CP A+ E G + + C YCG C ACPV+AI Sbjct: 271 DDEECVGCGLCVEVCPCGALEFEKGGKAGK-----TKIVAHPETCAYCGACARACPVNAI 325 Query: 119 VEGPN 123 Sbjct: 326 TVVRE 330 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 8/62 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C C +CP AI + ++D +C+ CGLC E CP A+ Sbjct: 239 DPSSCVYCGWCGFVCPVDAIEVIK--------PYEGTLEVDDEECVGCGLCVEVCPCGAL 290 Query: 119 VE 120 Sbjct: 291 EF 292 Score = 38.2 bits (87), Expect = 0.35, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 3/63 (4%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDG---TRRTVRYDIDMIKCIYCGLCQEACPV 115 E +C+ C +C +CP I + + ++D +C+YC LC + CP Sbjct: 70 DESKCVLCGICAFVCPYDVIQLLVNGKPMTEAGLPNLPKSVEVDEEECVYCSLCADTCPQ 129 Query: 116 DAI 118 +AI Sbjct: 130 EAI 132 >gi|313683592|ref|YP_004061330.1| 4fe-4S ferredoxin, iron-sulfur binding protein [Sulfuricurvum kujiense DSM 16994] gi|313156452|gb|ADR35130.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Sulfuricurvum kujiense DSM 16994] Length = 333 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 32/103 (31%), Gaps = 11/103 (10%) Query: 12 FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71 + + + + L F +A P F+ LR NG C +C C Sbjct: 208 LIADLLFGLMIALALFVRAPFCRICPI--LPMQTLFKKIGLLRLVKNGSSSCESCGNCVK 265 Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 CP I+ +I C CG C E CP Sbjct: 266 ACPMDIYEIQESAENK---------NITHADCTLCGRCIEFCP 299 >gi|297587645|ref|ZP_06946289.1| pyruvate:ferredoxin oxidoreductase [Finegoldia magna ATCC 53516] gi|297574334|gb|EFH93054.1| pyruvate:ferredoxin oxidoreductase [Finegoldia magna ATCC 53516] Length = 1224 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 42/139 (30%), Gaps = 27/139 (19%) Query: 28 FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA------------ 75 FK + +P TS + AL ++CI C C +CP Sbjct: 657 FKDRANGEFP---MGTSAYEKRCIALNVPEWQMDKCIQCNQCAYVCPHAVIRPFLLNEED 713 Query: 76 --QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLCQEACP--VDAIVEGPNFEFATE 129 A + + + I C CG C + CP A++ P E Sbjct: 714 RKNAPETFESKKAVGKGFEDLTFRIQVSPADCTGCGNCADVCPAKEKALIMKPFEEQHLA 773 Query: 130 TRQELYY------DKERLL 142 + Y KE L+ Sbjct: 774 QKDNWTYAVEKVGYKEDLM 792 >gi|298528244|ref|ZP_07015648.1| NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding [Desulfonatronospira thiodismutans ASO3-1] gi|298511896|gb|EFI35798.1| NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding [Desulfonatronospira thiodismutans ASO3-1] Length = 682 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 28/127 (22%), Positives = 42/127 (33%), Gaps = 29/127 (22%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINY----PFEKGSTSPRFRGEHALRRYPNGEERCIACKL 68 L+++ F L F + K T PF K CI C Sbjct: 112 LQDYAYEFGLRESSFSRKKFTYPVDEGNPFVKR-----------------DPAYCILCGR 154 Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDI--DMIKCIYCGLCQEACPVDAIVE------ 120 C +C Q + ++ D+ C +CG C + CPV A+ E Sbjct: 155 CVRVCKEQGTNVLDFMGRGIESKVITANDMPLHESGCTFCGSCIDVCPVSALREADREQK 214 Query: 121 GPNFEFA 127 G +EF+ Sbjct: 215 GREWEFS 221 >gi|169830611|ref|YP_001716593.1| hydrogenase large subunit [Candidatus Desulforudis audaxviator MP104C] gi|169637455|gb|ACA58961.1| hydrogenase large subunit domain protein [Candidatus Desulforudis audaxviator MP104C] Length = 485 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 6/71 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110 + C+ C +C CP AI S P ++ D ID+ KC+ CG+C Sbjct: 125 YIDNDSCVECGICAKNCPYYAIVEISRPCERSCDMGAIKVDECRRAVIDLDKCVSCGMCV 184 Query: 111 EACPVDAIVEG 121 CP AI + Sbjct: 185 AVCPFGAITDT 195 >gi|329578082|gb|EGG59495.1| pyruvate synthase [Enterococcus faecalis TX1467] Length = 1177 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96 AL ++C C C +CP AI E G R Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130 + + C CGLC +ACPV AI+ P +E E Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773 >gi|327535793|gb|AEA94627.1| pyruvate:ferredoxin oxidoreductase [Enterococcus faecalis OG1RF] Length = 1177 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96 AL ++C C C +CP AI E G R Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130 + + C CGLC +ACPV AI+ P +E E Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773 >gi|323481499|gb|ADX80938.1| pyruvate:ferredoxin oxidoreductase [Enterococcus faecalis 62] Length = 1177 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96 AL ++C C C +CP AI E G R Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130 + + C CGLC +ACPV AI+ P +E E Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773 >gi|315574716|gb|EFU86907.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX0309B] gi|315580972|gb|EFU93163.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX0309A] Length = 1177 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96 AL ++C C C +CP AI E G R Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130 + + C CGLC +ACPV AI+ P +E E Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773 >gi|315172494|gb|EFU16511.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX1346] Length = 1177 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96 AL ++C C C +CP AI E G R Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130 + + C CGLC +ACPV AI+ P +E E Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773 >gi|315170187|gb|EFU14204.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX1342] Length = 1177 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96 AL ++C C C +CP AI E G R Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130 + + C CGLC +ACPV AI+ P +E E Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773 >gi|315168553|gb|EFU12570.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX1341] Length = 1177 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96 AL ++C C C +CP AI E G R Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130 + + C CGLC +ACPV AI+ P +E E Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773 >gi|315150055|gb|EFT94071.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX0012] Length = 1177 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96 AL ++C C C +CP AI E G R Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130 + + C CGLC +ACPV AI+ P +E E Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773 >gi|315148537|gb|EFT92553.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX4244] Length = 1177 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96 AL ++C C C +CP AI E G R Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130 + + C CGLC +ACPV AI+ P +E E Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773 >gi|315032695|gb|EFT44627.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX0017] gi|315143710|gb|EFT87726.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX2141] Length = 1177 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96 AL ++C C C +CP AI E G R Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130 + + C CGLC +ACPV AI+ P +E E Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773 >gi|312899937|ref|ZP_07759255.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX0470] gi|311292933|gb|EFQ71489.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX0470] Length = 1177 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96 AL ++C C C +CP AI E G R Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130 + + C CGLC +ACPV AI+ P +E E Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773 >gi|312953593|ref|ZP_07772430.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX0102] gi|310628431|gb|EFQ11714.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX0102] gi|315151860|gb|EFT95876.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX0031] Length = 1177 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96 AL ++C C C +CP AI E G R Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130 + + C CGLC +ACPV AI+ P +E E Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773 >gi|307270724|ref|ZP_07552015.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX4248] gi|306513034|gb|EFM81675.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX4248] Length = 1177 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96 AL ++C C C +CP AI E G R Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130 + + C CGLC +ACPV AI+ P +E E Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773 >gi|307287613|ref|ZP_07567656.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX0109] gi|306501351|gb|EFM70654.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX0109] gi|315165010|gb|EFU09027.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX1302] Length = 1177 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96 AL ++C C C +CP AI E G R Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130 + + C CGLC +ACPV AI+ P +E E Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773 >gi|307290425|ref|ZP_07570340.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX0411] gi|306498618|gb|EFM68120.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX0411] Length = 1177 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96 AL ++C C C +CP AI E G R Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130 + + C CGLC +ACPV AI+ P +E E Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773 >gi|294781438|ref|ZP_06746780.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis PC1.1] gi|294451565|gb|EFG20025.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis PC1.1] Length = 1189 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96 AL ++C C C +CP AI E G R Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130 + + C CGLC +ACPV AI+ P +E E Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773 >gi|257416752|ref|ZP_05593746.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Enterococcus faecalis AR01/DG] gi|257158580|gb|EEU88540.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Enterococcus faecalis ARO1/DG] Length = 1177 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96 AL ++C C C +CP AI E G R Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130 + + C CGLC +ACPV AI+ P +E E Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773 >gi|257090704|ref|ZP_05585065.1| pyruvate decarboxylase [Enterococcus faecalis CH188] gi|312905245|ref|ZP_07764365.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX0635] gi|256999516|gb|EEU86036.1| pyruvate decarboxylase [Enterococcus faecalis CH188] gi|310631482|gb|EFQ14765.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX0635] gi|315579260|gb|EFU91451.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX0630] Length = 1177 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96 AL ++C C C +CP AI E G R Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130 + + C CGLC +ACPV AI+ P +E E Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773 >gi|257087545|ref|ZP_05581906.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis D6] gi|256995575|gb|EEU82877.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis D6] gi|315025298|gb|EFT37230.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX2137] Length = 1177 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96 AL ++C C C +CP AI E G R Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130 + + C CGLC +ACPV AI+ P +E E Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773 >gi|257084456|ref|ZP_05578817.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Enterococcus faecalis Fly1] gi|256992486|gb|EEU79788.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Enterococcus faecalis Fly1] Length = 1177 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96 AL ++C C C +CP AI E G R Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130 + + C CGLC +ACPV AI+ P +E E Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773 >gi|257079740|ref|ZP_05574101.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Enterococcus faecalis JH1] gi|256987770|gb|EEU75072.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Enterococcus faecalis JH1] Length = 1177 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96 AL ++C C C +CP AI E G R Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130 + + C CGLC +ACPV AI+ P +E E Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773 >gi|256963682|ref|ZP_05567853.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis HIP11704] gi|307271628|ref|ZP_07552899.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX0855] gi|256954178|gb|EEU70810.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis HIP11704] gi|306511506|gb|EFM80505.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX0855] Length = 1177 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96 AL ++C C C +CP AI E G R Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130 + + C CGLC +ACPV AI+ P +E E Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773 >gi|256961199|ref|ZP_05565370.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis Merz96] gi|293384148|ref|ZP_06630042.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis R712] gi|293386962|ref|ZP_06631531.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis S613] gi|312907901|ref|ZP_07766884.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis DAPTO 512] gi|312978570|ref|ZP_07790308.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis DAPTO 516] gi|256951695|gb|EEU68327.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis Merz96] gi|291078628|gb|EFE15992.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis R712] gi|291083632|gb|EFE20595.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis S613] gi|310625992|gb|EFQ09275.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis DAPTO 512] gi|311288719|gb|EFQ67275.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis DAPTO 516] Length = 1177 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96 AL ++C C C +CP AI E G R Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130 + + C CGLC +ACPV AI+ P +E E Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773 >gi|256957802|ref|ZP_05561973.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Enterococcus faecalis DS5] gi|256948298|gb|EEU64930.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Enterococcus faecalis DS5] Length = 1193 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96 AL ++C C C +CP AI E G R Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130 + + C CGLC +ACPV AI+ P +E E Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773 >gi|256853874|ref|ZP_05559239.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Enterococcus faecalis T8] gi|256710817|gb|EEU25860.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Enterococcus faecalis T8] gi|315030383|gb|EFT42315.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX4000] Length = 1177 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96 AL ++C C C +CP AI E G R Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130 + + C CGLC +ACPV AI+ P +E E Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773 >gi|256763201|ref|ZP_05503781.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis T3] gi|256684452|gb|EEU24147.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis T3] Length = 1177 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96 AL ++C C C +CP AI E G R Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130 + + C CGLC +ACPV AI+ P +E E Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773 >gi|256616925|ref|ZP_05473771.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Enterococcus faecalis ATCC 4200] gi|307276810|ref|ZP_07557921.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX2134] gi|256596452|gb|EEU15628.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Enterococcus faecalis ATCC 4200] gi|306506447|gb|EFM75606.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX2134] Length = 1177 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96 AL ++C C C +CP AI E G R Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130 + + C CGLC +ACPV AI+ P +E E Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773 >gi|255975082|ref|ZP_05425668.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis T2] gi|307285593|ref|ZP_07565732.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX0860] gi|255967954|gb|EET98576.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis T2] gi|306502817|gb|EFM72082.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX0860] Length = 1177 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96 AL ++C C C +CP AI E G R Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130 + + C CGLC +ACPV AI+ P +E E Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773 >gi|300860602|ref|ZP_07106689.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TUSoD Ef11] gi|300849641|gb|EFK77391.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TUSoD Ef11] gi|315035847|gb|EFT47779.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX0027] gi|315159259|gb|EFU03276.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX0312] Length = 1177 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96 AL ++C C C +CP AI E G R Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130 + + C CGLC +ACPV AI+ P +E E Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773 >gi|229545072|ref|ZP_04433797.1| pyruvate synthase [Enterococcus faecalis TX1322] gi|229309964|gb|EEN75951.1| pyruvate synthase [Enterococcus faecalis TX1322] Length = 1184 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96 AL ++C C C +CP AI E G R Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130 + + C CGLC +ACPV AI+ P +E E Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773 >gi|227554056|ref|ZP_03984103.1| pyruvate synthase [Enterococcus faecalis HH22] gi|257419969|ref|ZP_05596963.1| pyruvate decarboxylase [Enterococcus faecalis T11] gi|227176804|gb|EEI57776.1| pyruvate synthase [Enterococcus faecalis HH22] gi|257161797|gb|EEU91757.1| pyruvate decarboxylase [Enterococcus faecalis T11] Length = 1177 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96 AL ++C C C +CP AI E G R Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130 + + C CGLC +ACPV AI+ P +E E Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773 >gi|29377046|ref|NP_816200.1| pyruvate flavodoxin/ferredoxin oxidoreductase family protein [Enterococcus faecalis V583] gi|29344512|gb|AAO82270.1| pyruvate flavodoxin/ferredoxin oxidoreductase family protein [Enterococcus faecalis V583] Length = 1177 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96 AL ++C C C +CP AI E G R Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130 + + C CGLC +ACPV AI+ P +E E Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773 >gi|298387444|ref|ZP_06996996.1| Fe-hydrogenase large subunit family protein [Bacteroides sp. 1_1_14] gi|298259651|gb|EFI02523.1| Fe-hydrogenase large subunit family protein [Bacteroides sp. 1_1_14] Length = 489 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 6/68 (8%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQEA 112 + C++C +C CP AI P + ID KCIYCG C A Sbjct: 148 DHDTCVSCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGVEHIDESKCIYCGKCMNA 207 Query: 113 CPVDAIVE 120 CP AI E Sbjct: 208 CPFGAIFE 215 Score = 38.9 bits (89), Expect = 0.23, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 12/97 (12%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------------ITIESGPR 85 E S R C+ + C + + P+ Sbjct: 75 DEVTPLSEYARMALNRPEPSKENIMCVIDEACSSCVQINYEITNLCRGCVARSCYMNCPK 134 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 ++ + ID C+ CG+C ++CP AIV P Sbjct: 135 DAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAIVYIP 171 >gi|257421852|ref|ZP_05598842.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Enterococcus faecalis X98] gi|257163676|gb|EEU93636.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Enterococcus faecalis X98] gi|315155444|gb|EFT99460.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX0043] Length = 862 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96 AL ++C C C +CP AI E G R Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130 + + C CGLC +ACPV AI+ P +E E Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773 >gi|253571979|ref|ZP_04849384.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251838576|gb|EES66662.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 489 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 6/68 (8%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQEA 112 + C++C +C CP AI P + ID KCIYCG C A Sbjct: 148 DHDTCVSCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGVEHIDESKCIYCGKCMNA 207 Query: 113 CPVDAIVE 120 CP AI E Sbjct: 208 CPFGAIFE 215 Score = 38.9 bits (89), Expect = 0.23, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 12/97 (12%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------------ITIESGPR 85 E S R C+ + C + + P+ Sbjct: 75 DEVTPLSEYARMALNRPEPSKENIMCVIDEACSSCVQINYEITNLCRGCVARSCYMNCPK 134 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 ++ + ID C+ CG+C ++CP AIV P Sbjct: 135 DAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAIVYIP 171 >gi|74318495|ref|YP_316235.1| putative glutamate synthase (NADPH) small subunit [Thiobacillus denitrificans ATCC 25259] gi|74057990|gb|AAZ98430.1| iron-sulfur cluster-binding protein, GltD family [Thiobacillus denitrificans ATCC 25259] Length = 653 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 23/60 (38%), Gaps = 3/60 (5%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 +C C C CP A+ R D D KCI C +C + CP IV G Sbjct: 594 QCFECDNCVVYCPQTAVFKVKKKDNPTVGRY---VDTDYGKCIGCHICADVCPTGYIVMG 650 >gi|332981009|ref|YP_004462450.1| dihydroorotate oxidase [Mahella australiensis 50-1 BON] gi|332698687|gb|AEE95628.1| dihydroorotate oxidase [Mahella australiensis 50-1 BON] Length = 385 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 11/60 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++C +C +C +C AI + P Y I C CGLC E CP+ A+ Sbjct: 334 DKCTSCGICAPLCIFDAIDSSTEP-----------YRIVQDICDGCGLCAEVCPISAVEM 382 >gi|23014811|ref|ZP_00054610.1| COG0493: NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Magnetospirillum magnetotacticum MS-1] Length = 651 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 21/59 (35%), Gaps = 4/59 (6%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C C CP A+ G Y KCI C +C++ CP I G Sbjct: 594 CFECDNCVVFCPQHAVDRVKKSERTTGRYVETDY----SKCIGCHICKDVCPTGYIQMG 648 >gi|332299925|ref|YP_004441846.1| Ferredoxin hydrogenase [Porphyromonas asaccharolytica DSM 20707] gi|332176988|gb|AEE12678.1| Ferredoxin hydrogenase [Porphyromonas asaccharolytica DSM 20707] Length = 499 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 28/70 (40%), Gaps = 6/70 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110 E CI+C C CP AI P + D ID KCIYCG C Sbjct: 147 QIDHEICISCGQCHKNCPYHAIVYIPVPCEESCPVGAISKDEDGIEHIDESKCIYCGSCL 206 Query: 111 EACPVDAIVE 120 ACP AI E Sbjct: 207 NACPFGAIFE 216 Score = 37.8 bits (86), Expect = 0.50, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 27/97 (27%), Gaps = 12/97 (12%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ------AITIESGPRCHDGTR 91 E S + C+ + C + S + + Sbjct: 76 DELTPLSEYAHTALHRPQPTKENVLCVIDEACTSCVQINYEVSNLCRGCVSRACSSNCPK 135 Query: 92 RTVRY------DIDMIKCIYCGLCQEACPVDAIVEGP 122 + + ID CI CG C + CP AIV P Sbjct: 136 SCISFKKNGQAQIDHEICISCGQCHKNCPYHAIVYIP 172 >gi|312878988|ref|ZP_07738788.1| NAD-dependent formate dehydrogenase catalytic subunit [Aminomonas paucivorans DSM 12260] gi|310782279|gb|EFQ22677.1| NAD-dependent formate dehydrogenase catalytic subunit [Aminomonas paucivorans DSM 12260] Length = 902 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 36/90 (40%), Gaps = 4/90 (4%) Query: 35 NYPF-EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGT 90 PF E+G T ++ E A Y +CI C C C + A Sbjct: 122 KSPFAEEGDTCTKYALEDANPFYVRDMNKCILCGRCIRACDSLAQYHAIDFQNRGIKTMV 181 Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + V D++ C +CG C + CPV A+ E Sbjct: 182 QPPVGVDLEHSDCTFCGQCVQVCPVGALSE 211 >gi|219853283|ref|YP_002467715.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanosphaerula palustris E1-9c] gi|219547542|gb|ACL17992.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanosphaerula palustris E1-9c] Length = 125 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 39/98 (39%), Gaps = 14/98 (14%) Query: 27 FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC 86 K T+NYP S RG + + C C LC CP QAI+++ Sbjct: 14 LLKKPATLNYPARPAKKSDLSRGHLTI-----DVDSCKWCGLCSRRCPTQAISVD----- 63 Query: 87 HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 R+ ++ID +C+ C C E CP + + Sbjct: 64 ----RKGKTWEIDRFRCVVCNSCVEICPAHCLTMENTY 97 >gi|29347244|ref|NP_810747.1| putative hydrogenase [Bacteroides thetaiotaomicron VPI-5482] gi|29339143|gb|AAO76941.1| putative hydrogenase [Bacteroides thetaiotaomicron VPI-5482] Length = 482 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 6/68 (8%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQEA 112 + C++C +C CP AI P + ID KCIYCG C A Sbjct: 141 DHDTCVSCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGVEHIDESKCIYCGKCMNA 200 Query: 113 CPVDAIVE 120 CP AI E Sbjct: 201 CPFGAIFE 208 Score = 38.9 bits (89), Expect = 0.23, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 12/97 (12%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------------ITIESGPR 85 E S R C+ + C + + P+ Sbjct: 68 DEVTPLSEYARMALNRPEPSKENIMCVIDEACSSCVQINYEITNLCRGCVARSCYMNCPK 127 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 ++ + ID C+ CG+C ++CP AIV P Sbjct: 128 DAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAIVYIP 164 >gi|295111792|emb|CBL28542.1| Uncharacterized Fe-S center protein [Synergistetes bacterium SGP1] Length = 370 Score = 54.7 bits (130), Expect = 4e-06, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 12/73 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 +E+CI C C IC A + G ID +C+ CG C ACPVD Sbjct: 192 HVEQEKCICCGRCVRICAHDAPHVTPGRGA----------TIDHDRCVGCGRCIGACPVD 241 Query: 117 AIVEGPNFEFATE 129 A+ P+++ A + Sbjct: 242 AVA--PDYDEAFD 252 >gi|313886419|ref|ZP_07820139.1| 4Fe-4S binding domain protein [Porphyromonas asaccharolytica PR426713P-I] gi|312924135|gb|EFR34924.1| 4Fe-4S binding domain protein [Porphyromonas asaccharolytica PR426713P-I] Length = 492 Score = 54.7 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 28/70 (40%), Gaps = 6/70 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110 E CI+C C CP AI P + D ID KCIYCG C Sbjct: 140 QIDHEICISCGQCHKNCPYHAIVYIPVPCEESCPVGAISKDEDGIEHIDESKCIYCGSCL 199 Query: 111 EACPVDAIVE 120 ACP AI E Sbjct: 200 NACPFGAIFE 209 Score = 37.8 bits (86), Expect = 0.52, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 27/97 (27%), Gaps = 12/97 (12%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ------AITIESGPRCHDGTR 91 E S + C+ + C + S + + Sbjct: 69 DELTPLSEYAHTALHRPQPTKENVLCVIDEACTSCVQINYEVSNLCRGCVSRACSSNCPK 128 Query: 92 RTVRY------DIDMIKCIYCGLCQEACPVDAIVEGP 122 + + ID CI CG C + CP AIV P Sbjct: 129 SCISFKKNGQAQIDHEICISCGQCHKNCPYHAIVYIP 165 >gi|218782454|ref|YP_002433772.1| hypothetical protein Dalk_4626 [Desulfatibacillum alkenivorans AK-01] gi|218763838|gb|ACL06304.1| protein of unknown function DUF362 [Desulfatibacillum alkenivorans AK-01] Length = 387 Score = 54.7 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 32/101 (31%), Positives = 40/101 (39%), Gaps = 19/101 (18%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80 L + T S RFR R P G+E+C C C ICPA AI+ Sbjct: 296 GTILSNMVRWPIT----------SKRFRNLFIDRPVP-GQEKCTLCYQCMKICPAGAIS- 343 Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 + G ++ D KCI C C E CP AI +G Sbjct: 344 ----KAGSGGKKPT---YDYNKCIRCYCCMEVCPEAAIEKG 377 >gi|51894398|ref|YP_077089.1| pyruvate ferredoxin oxidoreductase gamma-delta subunit [Symbiobacterium thermophilum IAM 14863] gi|51858087|dbj|BAD42245.1| pyruvate ferredoxin oxidoreductase gamma-delta subunit [Symbiobacterium thermophilum IAM 14863] Length = 343 Score = 54.7 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 4/81 (4%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+CI C C+ +CP E G G V I+ C C C EACPVDA+ Sbjct: 260 DREKCIDCAQCDMVCPDYCFVWEQG-VDKRGRPAMVLKGINYQYCKGCLKCVEACPVDAL 318 Query: 119 VEGPN---FEFATETRQELYY 136 E + A R + Sbjct: 319 REMREQDGYADAHTVRHDHLL 339 >gi|307298219|ref|ZP_07578023.1| BFD domain protein (2Fe-2S)-binding domain protein [Thermotogales bacterium mesG1.Ag.4.2] gi|306916305|gb|EFN46688.1| BFD domain protein (2Fe-2S)-binding domain protein [Thermotogales bacterium mesG1.Ag.4.2] Length = 605 Score = 54.7 bits (130), Expect = 5e-06, Method: Composition-based stats. Identities = 31/121 (25%), Positives = 38/121 (31%), Gaps = 21/121 (17%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE----------R 62 ++E + LR F T+ +F N Sbjct: 325 IQERLKYLKDTLRKFRSGPTSSKTRAGLSKLGSKFEEVSFTNGNQNDFTKYTGKMRPLIE 384 Query: 63 C---IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 C I C CE CPA AI+I G R ID KC CG+C CP AI Sbjct: 385 CFEAIPCNPCETSCPAGAISI--------GDNINSRPIIDYSKCTGCGICATTCPGLAIF 436 Query: 120 E 120 Sbjct: 437 M 437 >gi|325970707|ref|YP_004246898.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Spirochaeta sp. Buddy] gi|324025945|gb|ADY12704.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Spirochaeta sp. Buddy] Length = 369 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 24/65 (36%), Gaps = 11/65 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI C C IC A I G ID KC+ CG C CP DAI Sbjct: 193 DQSLCIGCGNCVDICAHDAPMITEGLS-----------WIDQNKCVGCGRCIGVCPTDAI 241 Query: 119 VEGPN 123 N Sbjct: 242 SNNDN 246 >gi|302347898|ref|YP_003815536.1| Pyruvate:ferredoxin oxidoreductase (POR) and putative 2-oxoglutarate:ferredoxin oxidoreductase (KGOR), delta subunit [Acidilobus saccharovorans 345-15] gi|302328310|gb|ADL18505.1| Pyruvate:ferredoxin oxidoreductase (POR) and putative 2-oxoglutarate:ferredoxin oxidoreductase (KGOR), delta subunit [Acidilobus saccharovorans 345-15] Length = 112 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 1/75 (1%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR-YDIDMIKCIYCG 107 G+ + +++CI C++C +CP AI P R YD+D C CG Sbjct: 34 GDWKVLMPVIDQDKCIRCRICWYVCPDNAIKELDKPHTTKAKRVYKISYDVDYDYCKGCG 93 Query: 108 LCQEACPVDAIVEGP 122 +C + CPV AI P Sbjct: 94 MCAQECPVKAIDMVP 108 >gi|289522156|ref|ZP_06439010.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503992|gb|EFD25156.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 573 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 15/97 (15%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 +RY F+ + + ++ AL +Y ++C C LC CP + I+ + Sbjct: 489 TTIRY-FRDEYLAHIEEKRCPAKVC----PALIKYVVDPDKCRKCGLCARNCPVKCISGD 543 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 R Y ID KCI CG C + CP I Sbjct: 544 ----------RQTPYFIDQEKCIKCGTCMQVCPFGVI 570 >gi|225175529|ref|ZP_03729523.1| nitrite and sulphite reductase 4Fe-4S region [Dethiobacter alkaliphilus AHT 1] gi|225168858|gb|EEG77658.1| nitrite and sulphite reductase 4Fe-4S region [Dethiobacter alkaliphilus AHT 1] Length = 285 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 26/86 (30%), Positives = 34/86 (39%), Gaps = 11/86 (12%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P G + + + CI+C LC CP+ AIT+E G Sbjct: 138 CPRSCAKPQENDFGFIGVIKPKFKQNDCISCGLCADTCPSGAITMEDGYPA--------- 188 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEG 121 ID KCI+CG C CP +A G Sbjct: 189 --IDREKCIHCGECVAVCPTEAWQVG 212 Score = 38.5 bits (88), Expect = 0.32, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 18/50 (36%), Gaps = 1/50 (2%) Query: 76 QAITIESGPRC-HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 + P+ G ++ CI CGLC + CP AI + Sbjct: 137 GCPRSCAKPQENDFGFIGVIKPKFKQNDCISCGLCADTCPSGAITMEDGY 186 >gi|221194389|ref|ZP_03567446.1| hydrogenase large subunit domain protein [Atopobium rimae ATCC 49626] gi|221185293|gb|EEE17683.1| hydrogenase large subunit domain protein [Atopobium rimae ATCC 49626] Length = 532 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQ 110 +E+CI C +CE +CP AI P R DID KC+ CG C Sbjct: 154 FIDQEKCIKCGMCEKVCPYHAILHHLRPCAEACGMHAIGSDEHGRADIDYEKCVSCGQCL 213 Query: 111 EACPVDAI 118 CP AI Sbjct: 214 VNCPFGAI 221 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 23/86 (26%), Gaps = 5/86 (5%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + C+ I ++ Sbjct: 98 IPEVYYQPPLI--NIIKFACNACEDNVFRVSNACQGCLAHPCREICPKGAISFVDKKAF- 154 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEG 121 ID KCI CG+C++ CP AI+ Sbjct: 155 --IDQEKCIKCGMCEKVCPYHAILHH 178 >gi|237744805|ref|ZP_04575286.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. 7_1] gi|229432034|gb|EEO42246.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. 7_1] Length = 1188 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 40/112 (35%), Gaps = 18/112 (16%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA--------------ITIESG 83 FE G+ + RG N ++CI C C +CP A + Sbjct: 675 FENGTAAFEKRGVAVDVPIWN-VDKCIQCNQCSYVCPHAAIRPFLINEKELKAAPMPFAT 733 Query: 84 PRCHDGTRRTVRYDIDMI--KCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 + + Y I + C+ CG C CP +A+ P E + E ++ Sbjct: 734 KKAAGKGLDGLVYRIQVSALDCVGCGSCANVCPANALDMRPIAE-SLEAHED 784 >gi|255658407|ref|ZP_05403816.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Mitsuokella multacida DSM 20544] gi|260849741|gb|EEX69748.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Mitsuokella multacida DSM 20544] Length = 1174 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 26/85 (30%), Gaps = 14/85 (16%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQ--------------AITIESGPRCHDGTRRTVRYD 97 A+ ++CI C C +CP A Sbjct: 680 AINVPVWNTQKCIGCNKCSYVCPHASIRPVLTTDEELAAAPEGFPSKDVRAVKDYHFTVA 739 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 + + C+ CG C + CPV A+ P Sbjct: 740 VSTMDCLGCGNCAQVCPVKALDMTP 764 >gi|220929646|ref|YP_002506555.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Clostridium cellulolyticum H10] gi|219999974|gb|ACL76575.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Clostridium cellulolyticum H10] Length = 597 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 31/69 (44%), Gaps = 10/69 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + +Y +C +C +C CP I E + V Y ID KC CG+C E Sbjct: 539 MMKYTVDASKCKSCGICAKACPMGCIKGE----------KKVPYVIDNSKCAKCGVCIEK 588 Query: 113 CPVDAIVEG 121 CP AI +G Sbjct: 589 CPFKAISKG 597 Score = 38.2 bits (87), Expect = 0.43, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 19/40 (47%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + + ++Y +D KC CG+C +ACP+ I Sbjct: 525 HVFDKKCPAGVCKSMMKYTVDASKCKSCGICAKACPMGCI 564 >gi|94972213|ref|YP_594253.1| formate dehydrogenase, alpha subunit [Deinococcus geothermalis DSM 11300] gi|94554264|gb|ABF44179.1| formate dehydrogenase, alpha subunit [Deinococcus geothermalis DSM 11300] Length = 1004 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 3/83 (3%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---YD 97 + + Y ++CI C C C + D R + Sbjct: 127 PYQPKPYPKDETNPFYRYDPDQCILCGRCVEACQNLQVNETLTINWEDPHPRVLWDGGRP 186 Query: 98 IDMIKCIYCGLCQEACPVDAIVE 120 I+ C+ CG C CP +A++E Sbjct: 187 INESSCVSCGHCVSVCPCNALME 209 >gi|228470307|ref|ZP_04055211.1| Fe-hydrogenase large subunit family protein [Porphyromonas uenonis 60-3] gi|228308050|gb|EEK16925.1| Fe-hydrogenase large subunit family protein [Porphyromonas uenonis 60-3] Length = 492 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 28/70 (40%), Gaps = 6/70 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110 + CI+C C CP AI P + D ID KCIYCG C Sbjct: 140 QIDHDVCISCGQCHKNCPYHAIVYIPVPCEESCPVGAISKDEDGIEHIDESKCIYCGSCL 199 Query: 111 EACPVDAIVE 120 ACP AI E Sbjct: 200 NACPFGAIFE 209 Score = 37.4 bits (85), Expect = 0.76, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 6/72 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110 +E C +C S + + + + ID CI CG C Sbjct: 94 CVIDEACTSCVQINYEVSNLCRGCVSRACSSNCPKSCISFQKNGQAQIDHDVCISCGQCH 153 Query: 111 EACPVDAIVEGP 122 + CP AIV P Sbjct: 154 KNCPYHAIVYIP 165 >gi|15679732|ref|NP_276850.1| pyruvate ferredoxin oxidoreductase subunit gamma/delta [Methanothermobacter thermautotrophicus str. Delta H] gi|2622871|gb|AAB86210.1| pyruvate oxidoreductase, gamma subunit [Methanothermobacter thermautotrophicus str. Delta H] Length = 261 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 14/65 (21%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +++CI C C CP I E ++ID C CG+C E CPV AI Sbjct: 210 DKDKCIDCDNCILFCPEGCINRE--------------HEIDYDYCKGCGICAEKCPVKAI 255 Query: 119 VEGPN 123 Sbjct: 256 KMERE 260 Score = 37.0 bits (84), Expect = 0.93, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 18/42 (42%) Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 + G+ RT + +D KCI C C CP I ++ Sbjct: 196 KNKTGSWRTFKPVLDKDKCIDCDNCILFCPEGCINREHEIDY 237 >gi|326405999|gb|ADZ63070.1| pyruvate dehydrogenase [Lactococcus lactis subsp. lactis CV56] Length = 1193 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 34/104 (32%), Gaps = 17/104 (16%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 E TS + AL + CI C C +CP AI + Sbjct: 668 DEPLGTSASEKRVIALEIPEWNAQACIQCNECSFVCPHAAIRPFLVDEDEWNQAPEGFHV 727 Query: 98 IDM--------------IKCIYCGLCQEACPV--DAIVEGPNFE 125 +D C CGLC EACP +A+ P +E Sbjct: 728 MDYKGADGLKYRIQVSVEDCTGCGLCVEACPKKGEALKMIP-YE 770 >gi|68304950|gb|AAY89961.1| predicted DsrL [uncultured bacterium BAC13K9BAC] Length = 657 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 21/60 (35%), Gaps = 4/60 (6%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C C CP A+ G Y+ KCI C +C + CP I G Sbjct: 599 MCFECDNCVIYCPQDAVFRVKKDEATLGRYVDTDYN----KCIGCHICADVCPTGYIKMG 654 >gi|15672404|ref|NP_266578.1| pyruvate-flavodoxin oxidoreductase [Lactococcus lactis subsp. lactis Il1403] gi|12723298|gb|AAK04520.1|AE006279_2 pyruvate-flavodoxin oxidoreductase [Lactococcus lactis subsp. lactis Il1403] Length = 1190 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 34/104 (32%), Gaps = 17/104 (16%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 E TS + AL + CI C C +CP AI + Sbjct: 665 DEPLGTSASEKRVIALEIPEWNAQACIQCNECSFVCPHAAIRPFLVDEDEWNQAPEGFHV 724 Query: 98 IDM--------------IKCIYCGLCQEACPV--DAIVEGPNFE 125 +D C CGLC EACP +A+ P +E Sbjct: 725 MDYKGADGLKYRIQVSVEDCTGCGLCVEACPKKGEALKMIP-YE 767 >gi|315161806|gb|EFU05823.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX0645] Length = 1177 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 33/96 (34%), Gaps = 17/96 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96 AL ++C C C +CP AI E G R Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPVGFAMREMRGTDGLMYRI 738 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130 + C CGLC +ACPV AI+ P +E E Sbjct: 739 QFSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773 >gi|260173332|ref|ZP_05759744.1| putative hydrogenase [Bacteroides sp. D2] gi|315921605|ref|ZP_07917845.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313695480|gb|EFS32315.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 489 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 6/68 (8%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQEA 112 + C++C +C CP AI P + ID KCIYCG C A Sbjct: 148 DHDTCVSCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDESKCIYCGKCMNA 207 Query: 113 CPVDAIVE 120 CP AI E Sbjct: 208 CPFGAIFE 215 Score = 38.5 bits (88), Expect = 0.28, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 12/97 (12%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------------ITIESGPR 85 E S R + C+ + C + + P+ Sbjct: 75 DEVTPLSEYARLALSRPEPDKENIMCVIDEACSSCVQINYEITNLCRGCVARSCYMNCPK 134 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 ++ + ID C+ CG+C ++CP AIV P Sbjct: 135 DAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAIVYIP 171 >gi|256026538|ref|ZP_05440372.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. D11] gi|289764548|ref|ZP_06523926.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. D11] gi|289716103|gb|EFD80115.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. D11] Length = 1188 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 40/112 (35%), Gaps = 18/112 (16%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA--------------ITIESG 83 FE G+ + RG N ++CI C C +CP A + Sbjct: 675 FENGTAAFEKRGVAVDVPIWN-VDKCIQCNQCSYVCPHAAIRPFLINEKELKAAPMPFAT 733 Query: 84 PRCHDGTRRTVRYDIDMI--KCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 + + Y I + C+ CG C CP +A+ P E + E ++ Sbjct: 734 KKAAGKGLDGLVYRIQVSALDCVGCGSCANVCPANALDMRPIAE-SLEAHED 784 >gi|326778460|ref|ZP_08237725.1| Ferredoxin--NADP(+) reductase [Streptomyces cf. griseus XylebKG-1] gi|326658793|gb|EGE43639.1| Ferredoxin--NADP(+) reductase [Streptomyces cf. griseus XylebKG-1] Length = 554 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 29/72 (40%), Gaps = 5/72 (6%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C C A+CP I R T ID CI CG C +ACPVDAI Sbjct: 7 QTCCNDATCVAVCPVNCIHPTPEERA---FGSTEMLHIDPRACIDCGACADACPVDAIF- 62 Query: 121 GPNFEFATETRQ 132 P + R+ Sbjct: 63 -PVDALSAGQRE 73 >gi|182437825|ref|YP_001825544.1| putative ferredoxin reductase [Streptomyces griseus subsp. griseus NBRC 13350] gi|178466341|dbj|BAG20861.1| putative ferredoxin reductase [Streptomyces griseus subsp. griseus NBRC 13350] Length = 554 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 29/72 (40%), Gaps = 5/72 (6%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C C A+CP I R T ID CI CG C +ACPVDAI Sbjct: 7 QTCCNDATCVAVCPVNCIHPTPEERA---FGSTEMLHIDPRACIDCGACADACPVDAIF- 62 Query: 121 GPNFEFATETRQ 132 P + R+ Sbjct: 63 -PVDALSAGQRE 73 >gi|293373213|ref|ZP_06619575.1| iron only hydrogenase large subunit, C-terminal domain protein [Bacteroides ovatus SD CMC 3f] gi|292631861|gb|EFF50477.1| iron only hydrogenase large subunit, C-terminal domain protein [Bacteroides ovatus SD CMC 3f] Length = 489 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 6/68 (8%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQEA 112 + C++C +C CP AI P + ID KCIYCG C A Sbjct: 148 DHDTCVSCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDESKCIYCGKCMNA 207 Query: 113 CPVDAIVE 120 CP AI E Sbjct: 208 CPFGAIFE 215 Score = 38.5 bits (88), Expect = 0.28, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 12/97 (12%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------------ITIESGPR 85 E S R + C+ + C + + P+ Sbjct: 75 DEVTPLSEYARLALSRPEPDKENIMCVIDEACSSCVQINYEITNLCRGCVARSCYMNCPK 134 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 ++ + ID C+ CG+C ++CP AIV P Sbjct: 135 DAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAIVYIP 171 >gi|281490964|ref|YP_003352944.1| pyruvate dehydrogenase [Lactococcus lactis subsp. lactis KF147] gi|281374722|gb|ADA64242.1| Pyruvate dehydrogenase (ferredoxin/flavodoxin-dependent) [Lactococcus lactis subsp. lactis KF147] Length = 1223 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 34/104 (32%), Gaps = 17/104 (16%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 E TS + AL + CI C C +CP AI + Sbjct: 665 DEPLGTSASEKRGIALEIPEWNAQACIQCNECSFVCPHAAIRPFLVDEDEWNQAPEGFHV 724 Query: 98 IDM--------------IKCIYCGLCQEACPV--DAIVEGPNFE 125 +D C CGLC EACP +A+ P +E Sbjct: 725 MDYKGADGLKYRIQVSVEDCTGCGLCVEACPKKGEALKMIP-YE 767 >gi|218961476|ref|YP_001741251.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional hydrogenase), subunit beta; putative signal peptide [Candidatus Cloacamonas acidaminovorans] gi|167730133|emb|CAO81045.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional hydrogenase), subunit beta; putative signal peptide [Candidatus Cloacamonas acidaminovorans] Length = 619 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 10/70 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L + +++CI C LC CP I+ + Y I+ + CI CG C + Sbjct: 538 LMHFEIDKDKCIGCSLCARKCPVSCISGSREEK----------YTINQLSCIKCGTCMDV 587 Query: 113 CPVDAIVEGP 122 CPV AI + P Sbjct: 588 CPVKAISKIP 597 Score = 39.3 bits (90), Expect = 0.16, Method: Composition-based stats. Identities = 12/30 (40%), Positives = 15/30 (50%) Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + ++ID KCI C LC CPV I Sbjct: 539 MHFEIDKDKCIGCSLCARKCPVSCISGSRE 568 >gi|308161867|gb|EFO64299.1| Fe-hydrogenase-1 [Giardia lamblia P15] Length = 495 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 26/86 (30%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 G A +CI C +C C Q I + + Sbjct: 23 PPKPQHDVTGVDANNAIMIDYAKCIGCNMCIKACDVQGIGVYKQNEKPKYPPIVKLSTLF 82 Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFE 125 CI CG C CPVDAI N E Sbjct: 83 NSDCIGCGQCATICPVDAIAPKNNLE 108 Score = 34.3 bits (77), Expect = 6.2, Method: Composition-based stats. Identities = 12/33 (36%), Positives = 14/33 (42%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 ID KCI C +C +AC V I E Sbjct: 40 MIDYAKCIGCNMCIKACDVQGIGVYKQNEKPKY 72 >gi|299149444|ref|ZP_07042501.1| Fe-hydrogenase large subunit family protein [Bacteroides sp. 3_1_23] gi|298512631|gb|EFI36523.1| Fe-hydrogenase large subunit family protein [Bacteroides sp. 3_1_23] Length = 489 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 6/68 (8%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQEA 112 + C++C +C CP AI P + ID KCIYCG C A Sbjct: 148 DHDTCVSCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDESKCIYCGKCMNA 207 Query: 113 CPVDAIVE 120 CP AI E Sbjct: 208 CPFGAIFE 215 Score = 38.5 bits (88), Expect = 0.28, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 12/97 (12%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------------ITIESGPR 85 E S R + C+ + C + + P+ Sbjct: 75 DEVTPLSEYARLALSRPEPDKENIMCVIDEACSSCVQINYEITNLCRGCVARSCYMNCPK 134 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 ++ + ID C+ CG+C ++CP AIV P Sbjct: 135 DAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAIVYIP 171 >gi|298480728|ref|ZP_06998924.1| Fe-hydrogenase large subunit family protein [Bacteroides sp. D22] gi|298273162|gb|EFI14727.1| Fe-hydrogenase large subunit family protein [Bacteroides sp. D22] Length = 489 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 6/68 (8%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQEA 112 + C++C +C CP AI P + ID KCIYCG C A Sbjct: 148 DHDTCVSCGICHKSCPYHAIVYIPVPCEEACPVKAISKDEHGIEHIDESKCIYCGKCMNA 207 Query: 113 CPVDAIVE 120 CP AI E Sbjct: 208 CPFGAIFE 215 Score = 37.8 bits (86), Expect = 0.47, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 8/69 (11%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + C C C P+ ++ + ID C+ CG+C ++C Sbjct: 111 QINYEITNLCRGC--VARSCYMNC------PKDAIRFKKNGQAMIDHDTCVSCGICHKSC 162 Query: 114 PVDAIVEGP 122 P AIV P Sbjct: 163 PYHAIVYIP 171 >gi|237723391|ref|ZP_04553872.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|229447913|gb|EEO53704.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] Length = 489 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 6/68 (8%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQEA 112 + C++C +C CP AI P + ID KCIYCG C A Sbjct: 148 DHDTCVSCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDESKCIYCGKCMNA 207 Query: 113 CPVDAIVE 120 CP AI E Sbjct: 208 CPFGAIFE 215 Score = 38.5 bits (88), Expect = 0.28, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 12/97 (12%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------------ITIESGPR 85 E S R + C+ + C + + P+ Sbjct: 75 DEVTPLSEYARLALSRPEPDKENIMCVIDEACSSCVQINYEITNLCRGCVARSCYMNCPK 134 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 ++ + ID C+ CG+C ++CP AIV P Sbjct: 135 DAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAIVYIP 171 >gi|237713804|ref|ZP_04544285.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262409289|ref|ZP_06085832.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|294644700|ref|ZP_06722449.1| 4Fe-4S binding domain protein [Bacteroides ovatus SD CC 2a] gi|294805939|ref|ZP_06764806.1| 4Fe-4S binding domain protein [Bacteroides xylanisolvens SD CC 1b] gi|229446251|gb|EEO52042.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262352741|gb|EEZ01838.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|292639963|gb|EFF58232.1| 4Fe-4S binding domain protein [Bacteroides ovatus SD CC 2a] gi|294446821|gb|EFG15421.1| 4Fe-4S binding domain protein [Bacteroides xylanisolvens SD CC 1b] gi|295085089|emb|CBK66612.1| Iron only hydrogenase large subunit, C-terminal domain [Bacteroides xylanisolvens XB1A] Length = 489 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 6/68 (8%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQEA 112 + C++C +C CP AI P + ID KCIYCG C A Sbjct: 148 DHDTCVSCGICHKSCPYHAIVYIPVPCEEACPVKAISKDEHGIEHIDESKCIYCGKCMNA 207 Query: 113 CPVDAIVE 120 CP AI E Sbjct: 208 CPFGAIFE 215 Score = 38.5 bits (88), Expect = 0.28, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 12/97 (12%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------------ITIESGPR 85 E S R + C+ + C + + P+ Sbjct: 75 DEVTPLSEYARLALSRPEPDKENIMCVIDEACSSCVQINYEITNLCRGCVARSCYMNCPK 134 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 ++ + ID C+ CG+C ++CP AIV P Sbjct: 135 DAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAIVYIP 171 >gi|167629699|ref|YP_001680198.1| ferridoxin/ hydrogenase, putative [Heliobacterium modesticaldum Ice1] gi|167592439|gb|ABZ84187.1| ferridoxin/ hydrogenase, putative [Heliobacterium modesticaldum Ice1] Length = 493 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 31/68 (45%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY------DIDMIKCIYCGLCQ 110 +++CI C C +CP AIT P + ++Y ID KC+ CG C Sbjct: 141 YINQQKCIECGRCHQVCPYGAITDMQRPCIKACPVKAIQYGEDKIARIDPNKCVSCGHCA 200 Query: 111 EACPVDAI 118 +CP AI Sbjct: 201 VSCPFGAI 208 Score = 42.4 bits (98), Expect = 0.022, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 21/76 (27%), Gaps = 3/76 (3%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 A+ +R C + I R I+ K Sbjct: 90 IPDPLVRVIAIACDECPVDRFTVTGACRGCITHRCIEACPVDAIAQINRLA---YINQQK 146 Query: 103 CIYCGLCQEACPVDAI 118 CI CG C + CP AI Sbjct: 147 CIECGRCHQVCPYGAI 162 >gi|160886568|ref|ZP_02067571.1| hypothetical protein BACOVA_04579 [Bacteroides ovatus ATCC 8483] gi|156108453|gb|EDO10198.1| hypothetical protein BACOVA_04579 [Bacteroides ovatus ATCC 8483] Length = 489 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 6/68 (8%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQEA 112 + C++C +C CP AI P + ID KCIYCG C A Sbjct: 148 DHDTCVSCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDESKCIYCGKCMNA 207 Query: 113 CPVDAIVE 120 CP AI E Sbjct: 208 CPFGAIFE 215 Score = 38.5 bits (88), Expect = 0.28, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 12/97 (12%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------------ITIESGPR 85 E S R + C+ + C + + P+ Sbjct: 75 DEVTPLSEYARLALSRPEPDKENIMCVIDEACSSCVQINYEITNLCRGCVARSCYMNCPK 134 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 ++ + ID C+ CG+C ++CP AIV P Sbjct: 135 DAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAIVYIP 171 >gi|297568801|ref|YP_003690145.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfurivibrio alkaliphilus AHT2] gi|296924716|gb|ADH85526.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfurivibrio alkaliphilus AHT2] Length = 1019 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 6/63 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ CI C LCE++CP QAI I + + C CG+C CPV AI Sbjct: 946 DKDGCIGCGLCESLCPYQAIRIYKDDNNK------RKAETITASCKGCGICASHCPVFAI 999 Query: 119 VEG 121 G Sbjct: 1000 SMG 1002 Score = 40.1 bits (92), Expect = 0.098, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 28/94 (29%), Gaps = 12/94 (12%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP-------RCHDGTRRTVRY 96 F + +R ++C AC +C CP + + Y Sbjct: 93 PGAFTAKLQVRPRYIDADKCTACGMCTQYCPRHLVDGYNEGLAVTRPIHIDYPQAVPATY 152 Query: 97 DIDMIKCIY-----CGLCQEACPVDAIVEGPNFE 125 ID C++ C +C C AI E Sbjct: 153 FIDPKACLHLQHGTCKICVPVCQTKAIDFDQQPE 186 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 11/31 (35%), Positives = 14/31 (45%) Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +D CI CGLC+ CP AI + Sbjct: 940 PTVSTVDKDGCIGCGLCESLCPYQAIRIYKD 970 >gi|295113549|emb|CBL32186.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [Enterococcus sp. 7L76] Length = 1177 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 33/96 (34%), Gaps = 17/96 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96 AL ++C C C +CP AI E G R Sbjct: 679 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130 + C CGLC +ACPV AI+ P +E E Sbjct: 739 QFSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773 >gi|303239624|ref|ZP_07326149.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2] gi|302592795|gb|EFL62518.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2] Length = 598 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 10/66 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + +Y E C +C +C CP AI+ E + V Y ID KC+ CG+C E Sbjct: 539 MMKYVINAETCKSCGICAKQCPVGAISGE----------KKVPYVIDQNKCVKCGVCMEK 588 Query: 113 CPVDAI 118 CP AI Sbjct: 589 CPFKAI 594 Score = 40.5 bits (93), Expect = 0.075, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 19/49 (38%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + + + ++Y I+ C CG+C + CPV AI Sbjct: 516 KYFKDEYMAHVIDKKCPAGVCKSMMKYVINAETCKSCGICAKQCPVGAI 564 >gi|73670190|ref|YP_306205.1| hypothetical protein Mbar_A2721 [Methanosarcina barkeri str. Fusaro] gi|72397352|gb|AAZ71625.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro] Length = 369 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 26/69 (37%), Gaps = 11/69 (15%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E+CI C+ C ICP A + ID CI CG C E CPV AI Sbjct: 194 EKCIGCQKCIKICPVGAPYLLGE-----------VSMIDPNICISCGQCMEVCPVGAITI 242 Query: 121 GPNFEFATE 129 + Sbjct: 243 DWEHDIPNF 251 >gi|88603223|ref|YP_503401.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methanospirillum hungatei JF-1] gi|88188685|gb|ABD41682.1| formylmethanofuran dehydrogenase, subunit G [Methanospirillum hungatei JF-1] Length = 229 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 33/110 (30%), Positives = 42/110 (38%), Gaps = 12/110 (10%) Query: 24 LRYFFKAKTTINYPF---EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80 L +FF+ K IN+ E T RG + C C LC+ ICPA Sbjct: 27 LEFFFRKKWIINFLHPRTEPLETPLHARGVPEIT-----GRACTHCYLCQMICPA----P 77 Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 + G I CI CGLC E CP + G F+ AT + Sbjct: 78 GALEVKKTGRPAVWNPHIYPGHCIRCGLCVEICPEVVLESGRIFQKATRS 127 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 4/70 (5%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAIT----IESGPRCHDGTRRTVRYDIDMIKCI 104 G A+ CI C LC ICP + + R ++ I+ + CI Sbjct: 86 GRPAVWNPHIYPGHCIRCGLCVEICPEVVLESGRIFQKATRSETWMNYSIHIRINPVTCI 145 Query: 105 YCGLCQEACP 114 CG C ACP Sbjct: 146 GCGSCAVACP 155 Score = 38.9 bits (89), Expect = 0.21, Method: Composition-based stats. Identities = 15/86 (17%), Positives = 22/86 (25%), Gaps = 8/86 (9%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQ--------AITIESGPRCHDGTRRTVRYDIDM 100 + CI C C CP + + + + Sbjct: 130 WMNYSIHIRINPVTCIGCGSCAVACPINRQTDPVLTSKGTVTTDEVILAVENGIAHVFHE 189 Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEF 126 KC C C+E CP +I E Sbjct: 190 EKCTGCSTCEEQCPTRSIQVSRILEM 215 >gi|257784216|ref|YP_003179433.1| Ferredoxin hydrogenase [Atopobium parvulum DSM 20469] gi|257472723|gb|ACV50842.1| Ferredoxin hydrogenase [Atopobium parvulum DSM 20469] Length = 531 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQ 110 +E+CI C +C +CP QAI P G+ R DID KC+ CG C Sbjct: 154 YIDQEKCIQCGMCFKVCPYQAIHHHVRPCAAACGMDAIGSDEHGRADIDYEKCVSCGQCL 213 Query: 111 EACPVDAI 118 CP AI Sbjct: 214 VNCPFGAI 221 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 23/64 (35%), Gaps = 5/64 (7%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-----DIDMIKCIYCGLCQEACPVDA 117 C AC+ + P + + + ID KCI CG+C + CP A Sbjct: 115 CNACEDNVYRVTNACQGCLAHPCREICPKEAISFVDKKAYIDQEKCIQCGMCFKVCPYQA 174 Query: 118 IVEG 121 I Sbjct: 175 IHHH 178 >gi|167463835|ref|ZP_02328924.1| formate dehydrogenase chain A [Paenibacillus larvae subsp. larvae BRL-230010] gi|322384672|ref|ZP_08058350.1| oxidoreductase-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321150557|gb|EFX44038.1| oxidoreductase-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 982 Score = 54.3 bits (129), Expect = 5e-06, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 3/84 (3%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-- 97 + ++ + + Y ++CI C C C + R + D Sbjct: 124 RPFRPKGYKKDMSNPFYRYDPDQCILCGRCVEACQDLQVNETLSIDWEREIPRVIWDDDK 183 Query: 98 -IDMIKCIYCGLCQEACPVDAIVE 120 I+ C+ CG C CP +A++E Sbjct: 184 AINESSCVSCGHCVTVCPCNALME 207 >gi|95931039|ref|ZP_01313767.1| 4Fe-4S ferredoxin, iron-sulfur binding [Desulfuromonas acetoxidans DSM 684] gi|95132935|gb|EAT14606.1| 4Fe-4S ferredoxin, iron-sulfur binding [Desulfuromonas acetoxidans DSM 684] Length = 770 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 37/109 (33%), Gaps = 2/109 (1%) Query: 12 FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71 + +++ + R K + + K PR RG + RCI+C C Sbjct: 660 YCSDWLNGLEVVERK--KLEVIPQHRLSKELFRPRNRGRLNITDGREETTRCISCGTCRD 717 Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E+ R +G T Y D CI CG+C CP Sbjct: 718 CSMCLEACPEAAIRRIEGPNGTFEYVSDDHVCIGCGICAGLCPCGIWTM 766 >gi|225374841|ref|ZP_03752062.1| hypothetical protein ROSEINA2194_00464 [Roseburia inulinivorans DSM 16841] gi|225213302|gb|EEG95656.1| hypothetical protein ROSEINA2194_00464 [Roseburia inulinivorans DSM 16841] Length = 468 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 26/68 (38%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110 ++C C C CP AI P + YD ID KCI CG C Sbjct: 124 HIDPQKCKECGKCAQACPYNAIAHLKRPCKFSCPVNAITYDEYGISVIDEKKCIRCGKCI 183 Query: 111 EACPVDAI 118 +CP AI Sbjct: 184 HSCPFGAI 191 >gi|147920955|ref|YP_685237.1| putative hydrogenase 2(4Fe-4S) ferredoxin component (EchF-like) [uncultured methanogenic archaeon RC-I] gi|110620633|emb|CAJ35911.1| putative hydrogenase 2(4Fe-4S) ferredoxin component (EchF-like) [uncultured methanogenic archaeon RC-I] Length = 221 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 16/124 (12%) Query: 12 FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71 +K GAF + FK T++ + G + +R +E+C C C Sbjct: 1 MMKGKFGAFTGLIANLFKKPVTVDVDY--GFLAETYRAMPR-----RDDEKCTGCGACFE 53 Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET- 130 C + A I +D CI+CG C +ACP A+ + E Sbjct: 54 RCSSGATKITDKD-------GQRTVTVDGNNCIFCGRCADACPEHALSLTFEPQTPEEKA 106 Query: 131 -RQE 133 R+E Sbjct: 107 AREE 110 >gi|4972240|emb|CAB43934.1| pyruvate ferredoxin oxidoreductase [Clostridium pasteurianum] Length = 1181 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 30/101 (29%), Gaps = 16/101 (15%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES--------------- 82 FE G+ + RG + + +C+ C +C +C I Sbjct: 673 FEIGAAAYEKRGTAVMVPEW-DKTKCVQCNMCSFVCSHATIRPFMLDGDEVKAAPSNIKL 731 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + + C+ CG C CP AI P Sbjct: 732 ADTKPKAGEYKFTVSVTPLDCMGCGECITVCPTKAITMVPQ 772 >gi|297570585|ref|YP_003691929.1| fumarate reductase/succinate dehydrogenase flavoprotein domain protein [Desulfurivibrio alkaliphilus AHT2] gi|296926500|gb|ADH87310.1| fumarate reductase/succinate dehydrogenase flavoprotein domain protein [Desulfurivibrio alkaliphilus AHT2] Length = 1029 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 7/63 (11%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+CI C +CE CP +AI + + + + C CG+C CP AI Sbjct: 951 ETEKCIGCGVCETFCPYKAIRLHKVE-------KGRKAETVTASCKGCGVCAARCPTLAI 1003 Query: 119 VEG 121 G Sbjct: 1004 DMG 1006 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 27/92 (29%), Gaps = 12/92 (13%) Query: 47 FRGEHALRRYPNGEERCIACKLCEAIC-------PAQAITIESGPRCHDGTRRTVRYDID 99 F R EE+C C C C + ++ S R Y ID Sbjct: 106 FTARIRRRPRYIDEEKCTGCGQCAQYCLKLLGDDYNENLSRTSAIRIEYPQAVPTTYHID 165 Query: 100 MIKCIY-----CGLCQEACPVDAIVEGPNFEF 126 C+ CGLC C AI E Sbjct: 166 DSVCLRLKHNTCGLCTAVCQARAIDFSQQEEI 197 Score = 37.8 bits (86), Expect = 0.45, Method: Composition-based stats. Identities = 10/26 (38%), Positives = 14/26 (53%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGP 122 ++ KCI CG+C+ CP AI Sbjct: 949 RVETEKCIGCGVCETFCPYKAIRLHK 974 >gi|225872009|ref|YP_002753463.1| formate dehydrogenase, alpha subunit [Acidobacterium capsulatum ATCC 51196] gi|225791532|gb|ACO31622.1| formate dehydrogenase, alpha subunit [Acidobacterium capsulatum ATCC 51196] Length = 1005 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 3/83 (3%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY---D 97 + +H Y +CI C C C + R + + Sbjct: 136 PWQPKPYPQDHTNPFYRYDPNQCILCGRCVEACQNYQVNETLSINWESDHPRVLWDGGSE 195 Query: 98 IDMIKCIYCGLCQEACPVDAIVE 120 I C+ CG C CP +A++E Sbjct: 196 IGGSSCVSCGHCVTVCPCNALME 218 Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 24/74 (32%), Gaps = 9/74 (12%) Query: 49 GEHALRRYPNGEERCIACKL----CEA-----ICPAQAITIESGPRCHDGTRRTVRYDID 99 GE R N + C C C + + P+ + Y D Sbjct: 95 GEAFDRILKNHQLYCSVCDNNNQDCTVHNTTALLDVEHQKYPWQPKPYPQDHTNPFYRYD 154 Query: 100 MIKCIYCGLCQEAC 113 +CI CG C EAC Sbjct: 155 PNQCILCGRCVEAC 168 >gi|206890550|ref|YP_002249479.1| pyridine nucleotide-disulfide oxidoreductase [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742488|gb|ACI21545.1| pyridine nucleotide-disulfide oxidoreductase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 805 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 34/121 (28%), Gaps = 21/121 (17%) Query: 12 FLKEFVGAFFLCLRYFFKAKTTI----NYPFEKGSTSPRFRGEHALRRYPNGEE-----R 62 L E++ A T P+EK R E Sbjct: 696 LLAEYLHG------ELMHAPITRDLRPRIPYEKVKIDYYERCRAVTSLEQEAERCLSCGS 749 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C +CE C AI+ P Y +D KCI CG C CP Sbjct: 750 CRDCHMCEMTCYWGAISRVEKPDGRY------EYVVDENKCIACGFCVGICPCGVWEMVE 803 Query: 123 N 123 N Sbjct: 804 N 804 >gi|18312371|ref|NP_559038.1| pyruvate ferredoxin oxidoreductase delta subunit (porD) [Pyrobaculum aerophilum str. IM2] gi|18159822|gb|AAL63220.1| pyruvate ferredoxin oxidoreductase delta subunit (porD) [Pyrobaculum aerophilum str. IM2] Length = 102 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 28/65 (43%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++RCI C+LC CP I G V+Y++ C CG+C CP AI Sbjct: 37 HDDRCIRCQLCWLYCPEGTIAEIKGVFKVGNKTYDVKYEVIYDYCKGCGICANECPTKAI 96 Query: 119 VEGPN 123 P Sbjct: 97 EMVPE 101 >gi|301063579|ref|ZP_07204096.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] gi|300442311|gb|EFK06559.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] Length = 429 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 33/102 (32%), Gaps = 6/102 (5%) Query: 38 FEKGSTSPR--FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 E + R NG + CI C C CP + + Sbjct: 323 EEMPILPDTDAIMVQGRDRIVLNGNDPCINCGECIRACPVRIPVNMLVRLLENSQYENAA 382 Query: 96 YDIDMIKCIYCGLCQEAC----PVDAIVEGPNFEFATETRQE 133 + D++ CI CGLC C PV + +E + R E Sbjct: 383 REYDLLSCIECGLCSYVCEAKIPVFHYIMLGKYELSLMERAE 424 >gi|227519756|ref|ZP_03949805.1| pyruvate synthase [Enterococcus faecalis TX0104] gi|227072844|gb|EEI10807.1| pyruvate synthase [Enterococcus faecalis TX0104] Length = 1177 Score = 54.3 bits (129), Expect = 6e-06, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96 AL ++C C C +CP AI E G R Sbjct: 679 IALEVPEWQIDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 738 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130 + + C CGLC +ACPV AI+ P +E E Sbjct: 739 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 773 >gi|295098859|emb|CBK87948.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [Eubacterium cylindroides T2-87] Length = 1181 Score = 53.9 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 26/99 (26%), Gaps = 15/99 (15%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ--------------AITIESGP 84 E G+ + RG +CI C C +C A Sbjct: 674 ETGAAAYEKRGTAVTVPEW-DATKCIQCNQCAFVCSHATIRPFILDEKEAEAAPENIKLA 732 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + + C+ CG C CP AI P Sbjct: 733 DSKHAPGMKYTMSVTPLDCMGCGECITVCPTGAIKMVPQ 771 >gi|150389480|ref|YP_001319529.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149949342|gb|ABR47870.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Alkaliphilus metalliredigens QYMF] Length = 370 Score = 53.9 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 11/56 (19%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C++C CP AI +E ID CI CG C CP AI Sbjct: 196 CIGCQMCVENCPVDAIHMEDKKAV-----------IDPEVCIGCGECITVCPKRAI 240 Score = 40.5 bits (93), Expect = 0.083, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 14/36 (38%) Query: 87 HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + + CI C +C E CPVDAI Sbjct: 180 KQMQHSDAKPKVMENLCIGCQMCVENCPVDAIHMED 215 >gi|159119394|ref|XP_001709915.1| Fe-hydrogenase-1 [Giardia lamblia ATCC 50803] gi|13506793|gb|AAK28337.1| Fe-hydrogenase [Giardia intestinalis] gi|157438033|gb|EDO82241.1| Fe-hydrogenase-1 [Giardia lamblia ATCC 50803] Length = 474 Score = 53.9 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 24/68 (35%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +CI C +C C Q I + + CI CG C CPVDAI Sbjct: 21 DYAKCIGCNMCIKACDVQGIGVYKQNEKPKYPPIVKLSTLFNSDCIGCGQCATICPVDAI 80 Query: 119 VEGPNFEF 126 N E Sbjct: 81 APKNNLEI 88 Score = 34.3 bits (77), Expect = 6.4, Method: Composition-based stats. Identities = 12/33 (36%), Positives = 14/33 (42%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 ID KCI C +C +AC V I E Sbjct: 19 MIDYAKCIGCNMCIKACDVQGIGVYKQNEKPKY 51 >gi|307152881|ref|YP_003888265.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Cyanothece sp. PCC 7822] gi|306983109|gb|ADN14990.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Cyanothece sp. PCC 7822] Length = 1220 Score = 53.9 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 29/100 (29%), Gaps = 24/100 (24%) Query: 58 NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRYDID--MI 101 C+ C C +CP A + D + +++ I Sbjct: 697 WDPNVCVQCGKCVMVCPHAVIRSKVYEEQELANAPDTFKSTQAKDHDWKALKFTIQVAAE 756 Query: 102 KCIYCGLCQEACPV--------DAIVEGPNFEFATETRQE 133 C CG+C + CP AI P + R+ Sbjct: 757 DCTGCGICVDVCPAKNKSQPKLKAINMEPQLPLREQEREN 796 >gi|332376414|gb|AEE63347.1| unknown [Dendroctonus ponderosae] Length = 105 Score = 53.9 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 21/44 (47%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPR 46 + +F E + + L + FK TINYPFEKG SP Sbjct: 54 VTDRAALTMFWTELIRGLGITLAHIFKEPATINYPFEKGPLSPH 97 >gi|291614141|ref|YP_003524298.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Sideroxydans lithotrophicus ES-1] gi|291584253|gb|ADE11911.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Sideroxydans lithotrophicus ES-1] Length = 656 Score = 53.9 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 21/60 (35%), Gaps = 4/60 (6%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C C CP A+ G YD KCI C +C + CP I G Sbjct: 598 MCFECDNCVVYCPQTAVYRVKKTESTLGRYVATDYD----KCIGCHICADVCPTGYIQMG 653 >gi|154420549|ref|XP_001583289.1| 4Fe-4S binding domain containing protein [Trichomonas vaginalis G3] gi|121917530|gb|EAY22303.1| 4Fe-4S binding domain containing protein [Trichomonas vaginalis G3] Length = 499 Score = 53.9 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 6/65 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C C ICP A+T + + + + C+ CG C + CP AI Sbjct: 130 NHAACIDCYKCVDICPTGALTHGNHLQT------FGHFGLRDSGCVSCGACVDVCPTKAI 183 Query: 119 VEGPN 123 N Sbjct: 184 SVTDN 188 Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 16/50 (32%), Gaps = 2/50 (4%) Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPVDAIVEGP 122 A A + P I + CI C C + CP A+ G Sbjct: 104 ANAYKMIQDPTRKQTHIDITTGSIQLNHAACIDCYKCVDICPTGALTHGN 153 >gi|325846673|ref|ZP_08169588.1| pyruvate synthase [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481431|gb|EGC84472.1| pyruvate synthase [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 1176 Score = 53.9 bits (128), Expect = 6e-06, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 38/114 (33%), Gaps = 20/114 (17%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESG 83 FE G+T RG AL + CI C C +CP A Sbjct: 664 FEPGTTKYEKRG-IALNVPEWQIDNCIQCNQCSYVCPHAVIRPFLVTEDEKSNAPEGFET 722 Query: 84 PRC--HDGTRRTVRYDIDMIKCIYCGLCQEAC--PVDAIVEGPNFEFATETRQE 133 + R I + C CG C + C P A++ P FE E ++ Sbjct: 723 KKAIGKGMDGYDFRIQISPLDCTGCGNCADVCPAPKKALLMKP-FEEEVEKEKD 775 >gi|295100394|emb|CBK97939.1| Iron only hydrogenase large subunit, C-terminal domain [Faecalibacterium prausnitzii L2-6] Length = 517 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 34/86 (39%), Gaps = 8/86 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112 +E+CI C C +CP AI P + D ID KC+ CG C Sbjct: 152 DQEKCIKCGRCVGVCPYNAIVKTERPCAAACGMGAIHSDELGRAEIDYSKCVSCGQCLVN 211 Query: 113 CPVDAI-VEGPNFEF-ATETRQELYY 136 CP AI +G ++ R + Y Sbjct: 212 CPFGAIADKGQIYQLIQGFNRGDRIY 237 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 12/85 (14%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P R L + + + C+A C +CP +AIT ESG R Sbjct: 102 PLVNVIKFACNRCPEKLVKVSDLCQGCLA-HPCMEVCPKKAITWESG-----------RS 149 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEG 121 ID KCI CG C CP +AIV+ Sbjct: 150 TIDQEKCIKCGRCVGVCPYNAIVKT 174 >gi|259502158|ref|ZP_05745060.1| dihydroorotate dehydrogenase [Lactobacillus antri DSM 16041] gi|259169776|gb|EEW54271.1| dihydroorotate dehydrogenase [Lactobacillus antri DSM 16041] Length = 292 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 23/82 (28%), Gaps = 6/82 (7%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 K ++CI C C C A + D Sbjct: 187 KNVVPTSQLDRDYKVYPKIDWDKCIGCGRCFISCQDGAH------QAMGWDDEKRLPTFD 240 Query: 100 MIKCIYCGLCQEACPVDAIVEG 121 KC+ C LC CPV AI G Sbjct: 241 KSKCVGCQLCALVCPVHAIKLG 262 >gi|212696067|ref|ZP_03304195.1| hypothetical protein ANHYDRO_00603 [Anaerococcus hydrogenalis DSM 7454] gi|212676696|gb|EEB36303.1| hypothetical protein ANHYDRO_00603 [Anaerococcus hydrogenalis DSM 7454] Length = 1176 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 38/114 (33%), Gaps = 20/114 (17%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESG 83 FE G+T RG AL + CI C C +CP A Sbjct: 664 FEPGTTKYEKRG-IALNVPEWQIDNCIQCNQCSYVCPHAVIRPFLVTEDEKANAPEGFET 722 Query: 84 PRC--HDGTRRTVRYDIDMIKCIYCGLCQEAC--PVDAIVEGPNFEFATETRQE 133 + R I + C CG C + C P A++ P FE E ++ Sbjct: 723 KKAIGKGMDGYDFRIQISPLDCTGCGNCADVCPAPKKALLMKP-FEEEVEKEKD 775 >gi|327399635|ref|YP_004340504.1| glutamate synthase [Hippea maritima DSM 10411] gi|327182264|gb|AEA34445.1| Glutamate synthase (NADPH) [Hippea maritima DSM 10411] Length = 504 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 19/60 (31%), Gaps = 9/60 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + RCI CK C C A + C+ C C CP +AI Sbjct: 20 DDYRCIRCKACVEQCSFDATFYDEEEDKVWNWN---------ANCVGCNRCVAICPTEAI 70 >gi|260654695|ref|ZP_05860185.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Jonquetella anthropi E3_33 E1] gi|260630711|gb|EEX48905.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Jonquetella anthropi E3_33 E1] Length = 800 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 26/78 (33%), Gaps = 16/78 (20%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRR----------------TVRYDIDMIKCI 104 ++CI C C +CP AI R + + C+ Sbjct: 690 DKCIQCNQCAMVCPHAAIRPVLADDEEMKDAPAAFKTVDARGKELAGLKFRMQVSPLDCM 749 Query: 105 YCGLCQEACPVDAIVEGP 122 CG C + CPV A+ P Sbjct: 750 GCGNCADICPVKALEMSP 767 >gi|171185318|ref|YP_001794237.1| thiamine pyrophosphate binding domain-containing protein [Thermoproteus neutrophilus V24Sta] gi|170934530|gb|ACB39791.1| thiamine pyrophosphate protein domain protein TPP-binding [Thermoproteus neutrophilus V24Sta] Length = 590 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 10/63 (15%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 Y ++C+ C LC + AI + ID C CG+C E CP Sbjct: 524 YWVDVDKCVGCSLCYGLLRCSAIAPRGDRKA----------YIDPALCTGCGMCAEVCPT 573 Query: 116 DAI 118 AI Sbjct: 574 GAI 576 >gi|323698801|ref|ZP_08110713.1| response regulator receiver protein [Desulfovibrio sp. ND132] gi|323458733|gb|EGB14598.1| response regulator receiver protein [Desulfovibrio desulfuricans ND132] Length = 1142 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 13/83 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGP-------RCHDGTRRTVRYDIDMIKCIYCGLCQE 111 +CI+C C +CP + + + Y +D+ CI C C E Sbjct: 113 DPAKCISCGRCAEVCPVRVPSEFNAGLTERTAVHLPVPYAIPNHYVLDLDNCIRCWKCHE 172 Query: 112 ACPVDAIVEGPNFEFATETRQEL 134 ACP AI +F E R++ Sbjct: 173 ACPTGAI------DFKFEDRRDF 189 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 9/58 (15%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 C C+ C + CP A +++ + +D I C CG C CP A Sbjct: 1071 HSLCSLCQACVSACPYGARAVDTTEE---------KIIVDEILCQGCGACAAVCPNSA 1119 Score = 38.5 bits (88), Expect = 0.27, Method: Composition-based stats. Identities = 12/19 (63%), Positives = 12/19 (63%) Query: 98 IDMIKCIYCGLCQEACPVD 116 ID KCI CG C E CPV Sbjct: 112 IDPAKCISCGRCAEVCPVR 130 >gi|220904812|ref|YP_002480124.1| molybdopterin oxidoreductase Fe4S4 region [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869111|gb|ACL49446.1| molybdopterin oxidoreductase Fe4S4 region [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 374 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 36/98 (36%), Gaps = 9/98 (9%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYD 97 F ++ RC+ C C ++C A AI + G R V Sbjct: 149 PEPGSFPLDNDHPMITRDFSRCVQCGRCASVCSAVQVNDAIPPQFGRRAEKEAWWPVV-- 206 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 D +C +CG C + CP A+ ++ A R++ Sbjct: 207 -DYQRCTHCGECVQVCPTGALTAKKSYGLAA--REDRV 241 >gi|307719056|ref|YP_003874588.1| hypothetical protein STHERM_c13750 [Spirochaeta thermophila DSM 6192] gi|306532781|gb|ADN02315.1| hypothetical protein STHERM_c13750 [Spirochaeta thermophila DSM 6192] Length = 595 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 26/68 (38%), Positives = 31/68 (45%), Gaps = 10/68 (14%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 L Y ++CI C +C CP AIT E R + ID KCI CG C Sbjct: 535 VELVTYTILPDKCIGCGVCARRCPVNAITGE----------RKQPHVIDQDKCIKCGACY 584 Query: 111 EACPVDAI 118 EAC +AI Sbjct: 585 EACKFNAI 592 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 29/72 (40%), Gaps = 8/72 (11%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 I V Y I KCI CG+C CPV+AI E +Q D+ Sbjct: 523 HIVEKRCPTGKCVELVTYTILPDKCIGCGVCARRCPVNAI--------TGERKQPHVIDQ 574 Query: 139 ERLLNNGDRWES 150 ++ + G +E+ Sbjct: 575 DKCIKCGACYEA 586 >gi|291546307|emb|CBL19415.1| Iron only hydrogenase large subunit, C-terminal domain [Ruminococcus sp. SR1/5] Length = 340 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 7/83 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110 +++CI C C+A+CP AI + P + + D I+ KC+ CG+C Sbjct: 146 FIDQDKCIHCGRCKAVCPYDAIAHKERPCERACGVKAIESDEQGRASINQDKCVSCGMCM 205 Query: 111 EACPVDAI-VEGPNFEFATETRQ 132 +CP AI + F+ + R+ Sbjct: 206 VSCPFGAISDKSQIFQLSHALRE 228 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 13/66 (19%) Query: 57 PNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 C C C CP AI++ +G ID KCI+CG C+ CP Sbjct: 115 YEVSNMCRGCVAHPCLLTCPKGAISMVNGKSF-----------IDQDKCIHCGRCKAVCP 163 Query: 115 VDAIVE 120 DAI Sbjct: 164 YDAIAH 169 >gi|253741867|gb|EES98726.1| Fe-hydrogenase-1 [Giardia intestinalis ATCC 50581] Length = 474 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 24/68 (35%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +CI C +C C Q I + + CI CG C CPVDAI Sbjct: 21 DYAKCIGCNMCIKACDVQGIGVYKQNEKPKYPPIVKLSTLFKSDCIGCGQCATICPVDAI 80 Query: 119 VEGPNFEF 126 N E Sbjct: 81 APKNNIEI 88 Score = 35.1 bits (79), Expect = 3.2, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 15/46 (32%) Query: 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 G ID KCI C +C +AC V I E Sbjct: 6 QHDVTGVDYNNAIMIDYAKCIGCNMCIKACDVQGIGVYKQNEKPKY 51 >gi|261404864|ref|YP_003241105.1| pyruvate/ketoisovalerate oxidoreductase subunit gamma [Paenibacillus sp. Y412MC10] gi|261281327|gb|ACX63298.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit [Paenibacillus sp. Y412MC10] Length = 340 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 1/58 (1%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C+ +CP I E+ P G + ID C C C EACP A+ Sbjct: 255 EDCIHCAACDTVCPDFCIVWETKPD-KRGNMQMFMKGIDYQYCKGCLKCIEACPTTAL 311 Score = 35.5 bits (80), Expect = 2.3, Method: Composition-based stats. Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 4/46 (8%) Query: 89 GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134 G+R+ + + CI+C C CP IV E + R + Sbjct: 243 GSRQGYLPEYKIEDCIHCAACDTVCPDFCIVW----ETKPDKRGNM 284 >gi|294338873|emb|CAZ87210.1| BoxA (Benzoyl-CoA oxygenase component A) [Thiomonas sp. 3As] Length = 424 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 11/69 (15%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 LR++ E CI C CEA CP AIT ++ Y +D KC +C C Sbjct: 6 PAVLRQHLIDPEICIRCNTCEATCPVGAITHDAN-----------NYVVDADKCNFCMAC 54 Query: 110 QEACPVDAI 118 CP AI Sbjct: 55 VPPCPTGAI 63 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 11/23 (47%), Positives = 12/23 (52%) Query: 98 IDMIKCIYCGLCQEACPVDAIVE 120 ID CI C C+ CPV AI Sbjct: 14 IDPEICIRCNTCEATCPVGAITH 36 >gi|304316578|ref|YP_003851723.1| NADH dehydrogenase (quinone) [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778080|gb|ADL68639.1| NADH dehydrogenase (quinone) [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 596 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 15/97 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 LRY F+ + + ++ AL R+ E+C C +C CP AI+ Sbjct: 513 TLRY-FRDEYEAHIKEKRCPAGVC----QALLRFRIDPEKCKGCGICAKNCPTNAISG-- 565 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + + ID KCI CG C + CP DAI Sbjct: 566 --------KVKQPHVIDQDKCIKCGTCMDKCPFDAIY 594 >gi|227501325|ref|ZP_03931374.1| hydrogenase large subunit domain protein [Anaerococcus tetradius ATCC 35098] gi|227216558|gb|EEI81964.1| hydrogenase large subunit domain protein [Anaerococcus tetradius ATCC 35098] Length = 508 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV------RYDIDMIKCIYCGLCQ 110 +++CI C C CP AI + P + + R DI+ KC+ CG C Sbjct: 144 YIDQDKCIKCGKCVDACPYHAINHQKRPCAESCGVKAISSDDLGRADINEDKCVACGRCI 203 Query: 111 EACPVDAI 118 +CP AI Sbjct: 204 ISCPFGAI 211 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 5/65 (7%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-----DIDMIKCIYCGLCQEACPVDA 117 C AC + Q P + + V Y ID KCI CG C +ACP A Sbjct: 105 CEACPENKVTVTDQCHACIGHPCVNVCPKNAVSYSAKGAYIDQDKCIKCGKCVDACPYHA 164 Query: 118 IVEGP 122 I Sbjct: 165 INHQK 169 >gi|260588669|ref|ZP_05854582.1| iron-sulfur cluster-binding protein [Blautia hansenii DSM 20583] gi|331081982|ref|ZP_08331110.1| hypothetical protein HMPREF0992_00034 [Lachnospiraceae bacterium 6_1_63FAA] gi|260541144|gb|EEX21713.1| iron-sulfur cluster-binding protein [Blautia hansenii DSM 20583] gi|330405577|gb|EGG85107.1| hypothetical protein HMPREF0992_00034 [Lachnospiraceae bacterium 6_1_63FAA] Length = 374 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 11/62 (17%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + C+ C++C IC A E+ I+ KC+ CG C CP D Sbjct: 191 HVDQNLCVGCQMCAKICAHDAPEFENKKA-----------TINHDKCVGCGRCIGVCPKD 239 Query: 117 AI 118 AI Sbjct: 240 AI 241 >gi|94967507|ref|YP_589555.1| 4Fe-4S ferredoxin, iron-sulfur binding [Candidatus Koribacter versatilis Ellin345] gi|94549557|gb|ABF39481.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Candidatus Koribacter versatilis Ellin345] Length = 455 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 30/97 (30%), Gaps = 9/97 (9%) Query: 25 RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84 RY K + F + E RCI C C CP + G Sbjct: 31 RYLKKLRVIEESARHAAEQGAMFSEGPQAQHPLIDESRCIGCGTCSTACPEGDVLGIIGG 90 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 + + KCI G C EACPV AI Sbjct: 91 KAAI---------VKPYKCIGHGFCAEACPVGAITMT 118 >gi|323494238|ref|ZP_08099350.1| formate dehydrogenase, alpha subunit [Vibrio brasiliensis LMG 20546] gi|323311401|gb|EGA64553.1| formate dehydrogenase, alpha subunit [Vibrio brasiliensis LMG 20546] Length = 1402 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 14/79 (17%) Query: 59 GEERCIACKLCEAICPAQAITIE--------------SGPRCHDGTRRTVRYDIDMIKCI 104 RCI+C C C QA+ R H G+ R+ R + KC+ Sbjct: 631 DANRCISCGQCIQACSEQAVHGILNFVHDQNGRPALRPDDRPHFGSSRSGRILMGDSKCV 690 Query: 105 YCGLCQEACPVDAIVEGPN 123 CG C +ACP A+V+ + Sbjct: 691 QCGACVQACPTGAMVDSRD 709 Score = 33.5 bits (75), Expect = 9.8, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 20/68 (29%), Gaps = 4/68 (5%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100 G R G+ +C+ C C CP A+ + I Sbjct: 667 RPDDRPHFGSSRSGRILMGDSKCVQCGACVQACPTGAMVDSRDRSQGREEQLKQVDTI-- 724 Query: 101 IKCIYCGL 108 C YCG+ Sbjct: 725 --CTYCGV 730 >gi|320105609|ref|YP_004181199.1| formate dehydrogenase subunit alpha [Terriglobus saanensis SP1PR4] gi|319924130|gb|ADV81205.1| formate dehydrogenase, alpha subunit [Terriglobus saanensis SP1PR4] Length = 1021 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 3/85 (3%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR--- 95 ++ F +H+ Y ++CI C C C + R D R + Sbjct: 155 QRPFLHKPFEQDHSNPFYRYDPDQCILCGRCVEACQDVQVNETLTIRWEDEHPRVLWDGG 214 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVE 120 I C+ CG C CP +A++E Sbjct: 215 EQIAGSSCVSCGHCITVCPCNALME 239 Score = 42.0 bits (97), Expect = 0.029, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 33/119 (27%), Gaps = 21/119 (17%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGEHALR-----RYPNGEERCIAC----KLCEAICPAQ 76 +A +T P E S R + A R N + C C C Sbjct: 89 QLVRACSTEIAP-EMRVLSVSHRADVAQREAMDRILQNHDLYCTVCDNNNGNCTIHNTTG 147 Query: 77 AITIESGPRCHDG-----TRRTVRYDIDMIKCIYCGLCQEAC------PVDAIVEGPNF 124 ++I+ R Y D +CI CG C EAC I Sbjct: 148 EMSIQHQQRPFLHKPFEQDHSNPFYRYDPDQCILCGRCVEACQDVQVNETLTIRWEDEH 206 >gi|302392544|ref|YP_003828364.1| cobyrinic acid ac-diamide synthase [Acetohalobium arabaticum DSM 5501] gi|302204621|gb|ADL13299.1| Cobyrinic acid ac-diamide synthase [Acetohalobium arabaticum DSM 5501] Length = 288 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 14/63 (22%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 EE CI C LC+ +C A+T + Y+ID +KC CGLC CP DA+ Sbjct: 64 DEEECIDCGLCKKLCNFGAVTDD--------------YEIDEVKCEGCGLCAAKCPTDAL 109 Query: 119 VEG 121 Sbjct: 110 QLT 112 >gi|237739850|ref|ZP_04570331.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. 2_1_31] gi|229423458|gb|EEO38505.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. 2_1_31] Length = 1188 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 39/120 (32%), Gaps = 20/120 (16%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT---IESGPRCHDGTRRTV 94 FE G+ + RG N ++CI C C +CP AI I + + Sbjct: 677 FENGTAAFEKRGVAVDVPIWN-LDKCIQCNQCSYVCPHAAIRSFLITDEEKAASPIEFST 735 Query: 95 -------------RYDIDMIKCIYCGLCQEACPVDAIVEGPN---FEFATETRQELYYDK 138 R + + C CG C CP A+ P E + + Y K Sbjct: 736 LKANGKGLENLSYRIQVTPLDCTGCGSCANVCPAKALDMNPIAVALENQEDKKASYIYSK 795 >gi|303325627|ref|ZP_07356070.1| carbon monoxide-induced hydrogenase, iron-sulfur cluster-binding subunit [Desulfovibrio sp. 3_1_syn3] gi|302863543|gb|EFL86474.1| carbon monoxide-induced hydrogenase, iron-sulfur cluster-binding subunit [Desulfovibrio sp. 3_1_syn3] Length = 192 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 46/130 (35%), Gaps = 14/130 (10%) Query: 20 FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79 + R + +T +P + T R RG + C+ C +C +C A AI Sbjct: 5 LKVLFRNLLEGPSTDPFPLGETFTPARLRGRAKV-----DPTLCMGCGVCRHVCAAGAIN 59 Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139 I P I C C C+ CP A+ ++ A ++ + Sbjct: 60 ITHLPDGSGY-----TITIWQNSCCLCASCRHYCPTGAMSISTDWHSAHPEEEKF----D 110 Query: 140 RLLNNGDRWE 149 RL + ++E Sbjct: 111 RLEQHTIKYE 120 >gi|317050948|ref|YP_004112064.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Desulfurispirillum indicum S5] gi|316946032|gb|ADU65508.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Desulfurispirillum indicum S5] Length = 779 Score = 53.9 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 28/90 (31%), Positives = 31/90 (34%), Gaps = 8/90 (8%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 +P S + A R G C C CE ICP QAI T Sbjct: 693 HPMNPQRVSEQEADAEADRCMSCGY--CRDCHFCEDICPEQAIVRRENGDG------TFE 744 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 Y KCI CG+C CP V N E Sbjct: 745 YCSLDEKCIGCGICAGVCPCGIWVMEDNLE 774 >gi|118467681|ref|YP_889914.1| ferredoxin/ferredoxin--NADP reductase [Mycobacterium smegmatis str. MC2 155] gi|118168968|gb|ABK69864.1| probable ferredoxin/ferredoxin--NADP reductase [Mycobacterium smegmatis str. MC2 155] Length = 557 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 22/72 (30%), Gaps = 3/72 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C + C CP I G ID C+ CG C ACP Sbjct: 1 MPHVITQSCCSDGSCVYACPVNCIHPSPDE---PGFATAEMLYIDPDACVDCGACVSACP 57 Query: 115 VDAIVEGPNFEF 126 V AI E Sbjct: 58 VGAIAPDTRLEP 69 >gi|237736591|ref|ZP_04567072.1| hydrogenase [Fusobacterium mortiferum ATCC 9817] gi|229420453|gb|EEO35500.1| hydrogenase [Fusobacterium mortiferum ATCC 9817] Length = 642 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 10/62 (16%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E+CI C C +CP + I + ++ ID +C +CG C ACPV AI E Sbjct: 221 EKCIGCTACARVCPVKCIDG----------KLKEKHTIDTDRCTHCGQCVAACPVGAIFE 270 Query: 121 GP 122 G Sbjct: 271 GD 272 >gi|239616963|ref|YP_002940285.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Kosmotoga olearia TBF 19.5.1] gi|239505794|gb|ACR79281.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Kosmotoga olearia TBF 19.5.1] Length = 202 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 10/97 (10%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + + F + T +PFE +RG+ E+C+ C C +CPA+ Sbjct: 6 IREIKEAISNIFSKRFTTKFPFEVYEPVETYRGKPLF-----NPEKCVGCGACVQVCPAK 60 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 AI + + + CIYCG CQE C Sbjct: 61 AIDMVDDLVE-----KVRVLTVKYTDCIYCGQCQEKC 92 Score = 38.5 bits (88), Expect = 0.31, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 14/40 (35%) Query: 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + + KC+ CG C + CP AI + Sbjct: 28 EVYEPVETYRGKPLFNPEKCVGCGACVQVCPAKAIDMVDD 67 >gi|169831040|ref|YP_001717022.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Candidatus Desulforudis audaxviator MP104C] gi|169637884|gb|ACA59390.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Candidatus Desulforudis audaxviator MP104C] Length = 995 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 30/85 (35%), Gaps = 7/85 (8%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPA---QAITIESGPRC----HDGTRRTVRY 96 RFR E C C C A+CP A + G R Y Sbjct: 90 PGRFRVSLRHSPRGVAAEACKGCGDCAAVCPVEVPDAFNMGFGTRKAIYQPYSQAYPRAY 149 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEG 121 +D CI C LC EACP A+ G Sbjct: 150 VLDPEHCIECTLCVEACPTGAVTLG 174 Score = 42.4 bits (98), Expect = 0.022, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 29/83 (34%), Gaps = 24/83 (28%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 E+C AC C +CP I I+ ++C CG+C CP AI Sbjct: 921 PEKCAACLGCVRVCPFNVPVIAGN-----------ISWIEPVQCQGCGICVAECPNAAIH 969 Query: 120 EGPNFEFATETRQELYYDKERLL 142 Y KE+LL Sbjct: 970 LIG-------------YRKEQLL 979 >gi|18314097|ref|NP_560764.1| indolepyruvate ferredoxin oxidoreductase alpha subunit part 2, authentic frameshift [Pyrobaculum aerophilum str. IM2] gi|18161681|gb|AAL64946.1| indolepyruvate ferredoxin oxidoreductase alpha subunit part 2, authentic frameshift [Pyrobaculum aerophilum str. IM2] Length = 390 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 10/70 (14%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R L +Y +C C LC + AI + H +D C+ CG Sbjct: 314 RAGIQLPKYQVDVNKCTGCGLCYNLLKCSAIYKRPDRKAH----------VDPALCVGCG 363 Query: 108 LCQEACPVDA 117 +C E CP +A Sbjct: 364 ICAEVCPFNA 373 >gi|239981284|ref|ZP_04703808.1| putative ferredoxin reductase [Streptomyces albus J1074] gi|291453142|ref|ZP_06592532.1| ferredoxin-NADP+ reductase [Streptomyces albus J1074] gi|291356091|gb|EFE82993.1| ferredoxin-NADP+ reductase [Streptomyces albus J1074] Length = 535 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 3/67 (4%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C C A+CP I R T ID CI CG C +ACPVDAI Sbjct: 7 QTCCNDATCVAVCPVNCIHPTPEERA---FGSTEMLHIDPRSCIDCGACADACPVDAIFP 63 Query: 121 GPNFEFA 127 + A Sbjct: 64 VDRLKPA 70 >gi|323484489|ref|ZP_08089855.1| hypothetical protein HMPREF9474_01606 [Clostridium symbiosum WAL-14163] gi|323692550|ref|ZP_08106783.1| 4Fe-4S ferredoxin [Clostridium symbiosum WAL-14673] gi|323402267|gb|EGA94599.1| hypothetical protein HMPREF9474_01606 [Clostridium symbiosum WAL-14163] gi|323503416|gb|EGB19245.1| 4Fe-4S ferredoxin [Clostridium symbiosum WAL-14673] Length = 439 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 1/63 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-DIDMIKCIYCGLCQEACPVDA 117 E CI C C +CP AI +E +G + R +D C+ CG+C CPV A Sbjct: 291 NMETCIGCGKCAKVCPVLAIRMEEENPSGEGEKTGRRKAVVDKDICLGCGVCVRNCPVSA 350 Query: 118 IVE 120 I Sbjct: 351 IRL 353 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 3/45 (6%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNF---EFATETRQELYYDKE 139 ++M CI CG C + CPV AI E R++ DK+ Sbjct: 290 VNMETCIGCGKCAKVCPVLAIRMEEENPSGEGEKTGRRKAVVDKD 334 >gi|315925580|ref|ZP_07921790.1| Fe-hydrogenase large subunit family protein [Pseudoramibacter alactolyticus ATCC 23263] gi|315621121|gb|EFV01092.1| Fe-hydrogenase large subunit family protein [Pseudoramibacter alactolyticus ATCC 23263] Length = 493 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 6/66 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112 +C C +C CP AI P + + YD ID KCI CG C + Sbjct: 126 DANKCRECGMCATACPYNAIAHLVRPCKNSCPVDALTYDEMGLSVIDEEKCIRCGNCIHS 185 Query: 113 CPVDAI 118 CP AI Sbjct: 186 CPFGAI 191 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 13/62 (20%) Query: 61 ERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C K C + C AI R ID KC CG+C ACP +AI Sbjct: 97 DNCQNCLGKACLSACRFGAIHPGE-----------KRSRIDANKCRECGMCATACPYNAI 145 Query: 119 VE 120 Sbjct: 146 AH 147 >gi|302336154|ref|YP_003801361.1| Ferredoxin hydrogenase [Olsenella uli DSM 7084] gi|301319994|gb|ADK68481.1| Ferredoxin hydrogenase [Olsenella uli DSM 7084] Length = 539 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPR------CHDGTRRTVRYDIDMIKCIYCGLCQ 110 ++ C+ C +CE CP AI P G+ R DID KC+ CG C Sbjct: 158 HIDQDLCVQCGMCERTCPYHAIHHHVRPCAAACGMHAIGSDEHGRADIDYEKCVSCGQCL 217 Query: 111 EACPVDAI 118 CP AI Sbjct: 218 VNCPFGAI 225 Score = 42.0 bits (97), Expect = 0.029, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 5/64 (7%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-----DIDMIKCIYCGLCQEACPVDA 117 C ACK Q + P ++ + + ID C+ CG+C+ CP A Sbjct: 119 CNACKDNVYTVTDQCQGCLAHPCREICPKQAISFVDKRAHIDQDLCVQCGMCERTCPYHA 178 Query: 118 IVEG 121 I Sbjct: 179 IHHH 182 >gi|257066555|ref|YP_003152811.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Anaerococcus prevotii DSM 20548] gi|256798435|gb|ACV29090.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Anaerococcus prevotii DSM 20548] Length = 1178 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 40/133 (30%), Gaps = 31/133 (23%) Query: 24 LRYFFKA---------KTTINYPFEKGS----TSPRFRGEHALRRYPNGEERCIACKLCE 70 +R K + P++ G TS + AL + CI C C Sbjct: 639 IRNMVKPIINLHEDDLPVSAYLPYDDGQYMAGTSQYEKRGIALFVPEWKIDNCIQCNQCS 698 Query: 71 AICPAQAITI-----ESGPRCHDGTR-----------RTVRYDIDMIKCIYCGLCQEAC- 113 +CP I E+ +G R + C+ CG C + C Sbjct: 699 FVCPHATIRPFLLDDEAKANAPEGFETKKAIGKGLEGYEFRIQVSPYDCMGCGNCVDVCP 758 Query: 114 -PVDAIVEGPNFE 125 P A+ P E Sbjct: 759 APTKALEMKPIDE 771 >gi|218778375|ref|YP_002429693.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Desulfatibacillum alkenivorans AK-01] gi|218759759|gb|ACL02225.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Desulfatibacillum alkenivorans AK-01] Length = 774 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 33/108 (30%), Gaps = 3/108 (2%) Query: 19 AFFLCLRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEE--RCIACKLCEAICPA 75 A + K ++ P +K S + C +C C Sbjct: 663 AMAITAIMEGKRPESLEKPQIDKTRVSMGYFNPRVREFEEVNTCAMDCSSCGTCRDCGIC 722 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AI ++ + + +D KCI CG C ACP N Sbjct: 723 EAICPQAAITRVEEPGKRFEMVVDPEKCIGCGFCAGACPCGIWTLVEN 770 >gi|320101917|ref|YP_004177508.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Isosphaera pallida ATCC 43644] gi|319749199|gb|ADV60959.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Isosphaera pallida ATCC 43644] Length = 257 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 27/111 (24%), Positives = 39/111 (35%), Gaps = 17/111 (15%) Query: 19 AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA-CKLCEAICPAQA 77 + + TI YP R RG + RC + C+ C CP A Sbjct: 1 MLSVLAERLRQKHRTIEYPLAPPVLPDRLRGLPIV-----DASRCPSGCQACAEACPTNA 55 Query: 78 ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 I ++ ID+ KC++C C ACP +AI + A Sbjct: 56 IRLDPAGPV-----------IDLGKCLFCTECTTACPQEAIAYTTDHRLAV 95 >gi|210634534|ref|ZP_03298151.1| hypothetical protein COLSTE_02073 [Collinsella stercoris DSM 13279] gi|210158786|gb|EEA89757.1| hypothetical protein COLSTE_02073 [Collinsella stercoris DSM 13279] Length = 1180 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 17/101 (16%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------QAITIESGP----- 84 FE G+++ RG + + + +CI C C +CP A + + P Sbjct: 676 FELGASAYEKRGVAVMVPHWDE-TKCIQCNQCAYVCPHATIRPFALNADEMAAAPEGLRT 734 Query: 85 ---RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + T I + C+ C C + CP DA+ P Sbjct: 735 LDVKIPKDTGYKFTMAISPLDCMGCTNCAKVCPKDALTMVP 775 >gi|20807374|ref|NP_622545.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Thermoanaerobacter tengcongensis MB4] gi|254478307|ref|ZP_05091687.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Carboxydibrachium pacificum DSM 12653] gi|20515893|gb|AAM24149.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Thermoanaerobacter tengcongensis MB4] gi|214035772|gb|EEB76466.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Carboxydibrachium pacificum DSM 12653] Length = 596 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 39/97 (40%), Gaps = 15/97 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 LRY F+ + + ++ AL + E+C AC +C CP AI+ Sbjct: 513 TLRY-FRHEYEAHIKEKRCPAGVCT----ALLSFVIDPEKCKACGICAKNCPVGAISG-- 565 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + Y ID KCI CG C + CP AI Sbjct: 566 --------KPKTPYVIDQEKCIKCGTCIDKCPFGAIY 594 Score = 37.8 bits (86), Expect = 0.51, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 19/44 (43%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 I+ + + ID KC CG+C + CPV AI P Sbjct: 524 HIKEKRCPAGVCTALLSFVIDPEKCKACGICAKNCPVGAISGKP 567 >gi|262066343|ref|ZP_06025955.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Fusobacterium periodonticum ATCC 33693] gi|291379907|gb|EFE87425.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Fusobacterium periodonticum ATCC 33693] Length = 1188 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 39/120 (32%), Gaps = 20/120 (16%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT---IESGPRCHDGTRRTV 94 FE G+ + RG N ++CI C C +CP AI I + + Sbjct: 677 FENGTAAFEKRGVAVDVPIWN-LDKCIQCNQCSYVCPHAAIRSFLITDEEKAASPIEFST 735 Query: 95 -------------RYDIDMIKCIYCGLCQEACPVDAIVEGPN---FEFATETRQELYYDK 138 R + + C CG C CP A+ P E + + Y K Sbjct: 736 LKANGKGLENLSYRIQVTPLDCTGCGSCANVCPAKALDMNPIAVALENQEDKKASYIYSK 795 >gi|163796768|ref|ZP_02190726.1| dihydropyrimidine dehydrogenase [alpha proteobacterium BAL199] gi|159178022|gb|EDP62569.1| dihydropyrimidine dehydrogenase [alpha proteobacterium BAL199] Length = 435 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 6/95 (6%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI C C A S + R+++ +C+ Sbjct: 329 QYLNLNYVAKARIDQDSCIQCGRCHI-----ACEDTSHQAITNMVDGQRRFEVIDEECVG 383 Query: 106 CGLCQEACPV-DAIVEGPNFEFATETRQELYYDKE 139 C LC CPV + I P A + R + Sbjct: 384 CNLCVNVCPVENCITMVPMAAGAVDPRTGRVVTDD 418 >gi|20093900|ref|NP_613747.1| ferredoxin [Methanopyrus kandleri AV19] gi|19886841|gb|AAM01677.1| Ferredoxin [Methanopyrus kandleri AV19] Length = 192 Score = 53.9 bits (128), Expect = 8e-06, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 30/91 (32%), Gaps = 9/91 (9%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E PRFR +RCI C C CP + + Sbjct: 26 EIMQRPPRFRDFP-----DVDLDRCILCGACADACPVE----GRDGCPPAMEMSEEGPVL 76 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 +CI CGLC E CP AI G E E Sbjct: 77 HKERCIRCGLCVEVCPTGAIEMGTLHEEVEE 107 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 3/63 (4%) Query: 59 GEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 +ERCI C LC +CP AI + + R +D C+ CG C+ ACP Sbjct: 77 HKERCIRCGLCVEVCPTGAIEMGTLHEEVEERVQPPKPARIVVDSDLCVGCGKCESACPS 136 Query: 116 DAI 118 DAI Sbjct: 137 DAI 139 Score = 39.3 bits (90), Expect = 0.16, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 20/86 (23%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 E+ R + C+ C CE+ CP+ AIT+E Sbjct: 106 EERVQPPKPAR-------IVVDSDLCVGCGKCESACPSDAITVEETAEVD---------- 148 Query: 98 IDMIKCIYCGLCQEACPVD-AIVEGP 122 +C+ C +C E CPV AI P Sbjct: 149 --EERCVLCEVCLEVCPVAGAIKLVP 172 Score = 34.3 bits (77), Expect = 5.4, Method: Composition-based stats. Identities = 13/36 (36%), Positives = 17/36 (47%) Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 S R D+D+ +CI CG C +ACPV Sbjct: 22 HTSREIMQRPPRFRDFPDVDLDRCILCGACADACPV 57 >gi|188584741|ref|YP_001916286.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349428|gb|ACB83698.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus JW/NM-WN-LF] Length = 597 Score = 53.6 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 29/69 (42%), Gaps = 10/69 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L +Y + CI C C +CP AI+ E ID KCI CG C E Sbjct: 539 LVKYKIIADNCIGCTACVKVCPVDAISGEKKQAHE----------IDPDKCIGCGECYEK 588 Query: 113 CPVDAIVEG 121 C +AI G Sbjct: 589 CKFEAITLG 597 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 8/72 (11%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 IE G V+Y I CI C C + CPVDAI + E +Q D Sbjct: 525 HIEKGRCPAGICADLVKYKIIADNCIGCTACVKVCPVDAI--------SGEKKQAHEIDP 576 Query: 139 ERLLNNGDRWES 150 ++ + G+ +E Sbjct: 577 DKCIGCGECYEK 588 >gi|194466721|ref|ZP_03072708.1| dihydroorotate dehydrogenase family protein [Lactobacillus reuteri 100-23] gi|227543869|ref|ZP_03973918.1| dihydroorotate dehydrogenase family protein [Lactobacillus reuteri CF48-3A] gi|300909615|ref|ZP_07127076.1| dihydroorotate dehydrogenase [Lactobacillus reuteri SD2112] gi|157805448|gb|ABV80266.1| dihydropyrimidine dehydrogenase [Lactobacillus reuteri] gi|194453757|gb|EDX42654.1| dihydroorotate dehydrogenase family protein [Lactobacillus reuteri 100-23] gi|227186130|gb|EEI66201.1| dihydroorotate dehydrogenase family protein [Lactobacillus reuteri CF48-3A] gi|300893480|gb|EFK86839.1| dihydroorotate dehydrogenase [Lactobacillus reuteri SD2112] Length = 432 Score = 53.6 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 26/85 (30%), Gaps = 12/85 (14%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI---TIESGPRCHDGTRRTVRY 96 K + ++CI C C C A T + R + Sbjct: 323 KNIIPTNQLDRNYKVYPKIDWDKCIGCGRCFISCQDGAHQALTWDDEKRQPVFDK----- 377 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEG 121 KC+ C LC CPV AI G Sbjct: 378 ----SKCVGCQLCALVCPVGAIKLG 398 >gi|88603408|ref|YP_503586.1| cobyrinic acid a,c-diamide synthase [Methanospirillum hungatei JF-1] gi|88188870|gb|ABD41867.1| Cobyrinic acid a,c-diamide synthase [Methanospirillum hungatei JF-1] Length = 289 Score = 53.6 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 33/97 (34%), Gaps = 18/97 (18%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103 + FRG + + CI C +C C AI + Y++ +C Sbjct: 53 TQEFRG---MDGAVIDTKSCIGCGICAEACVYDAI-----------QKVGEIYEVVPYRC 98 Query: 104 IYCGLCQEACPVDAIVE----GPNFEFATETRQELYY 136 CG C CP DA+ +A + L Y Sbjct: 99 EGCGTCTIVCPEDAVSMKSRITGMIHYADTSAGPLLY 135 >gi|41406923|ref|NP_959759.1| FprB [Mycobacterium avium subsp. paratuberculosis K-10] gi|41395273|gb|AAS03142.1| FprB [Mycobacterium avium subsp. paratuberculosis K-10] Length = 566 Score = 53.6 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 21/64 (32%), Gaps = 3/64 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C C CP I G + ID C+ CG C ACP Sbjct: 1 MPHVITQSCCNDGSCVFACPVNCIHPTPDE---PGFATSEMLYIDPAACVDCGACVSACP 57 Query: 115 VDAI 118 V AI Sbjct: 58 VGAI 61 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 1/44 (2%) Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 + C G C ACPV+ I P+ E T + LY D Sbjct: 1 MPHVITQSCCNDGSCVFACPVNCIHPTPD-EPGFATSEMLYIDP 43 >gi|148544533|ref|YP_001271903.1| dihydropyrimidine dehydrogenase [Lactobacillus reuteri DSM 20016] gi|184153896|ref|YP_001842237.1| dihydropyrimidine dehydrogenase [Lactobacillus reuteri JCM 1112] gi|227363039|ref|ZP_03847176.1| dihydropyrimidine dehydrogenase [Lactobacillus reuteri MM2-3] gi|325682854|ref|ZP_08162370.1| dihydroorotate dehydrogenase [Lactobacillus reuteri MM4-1A] gi|148531567|gb|ABQ83566.1| dihydroorotate oxidase B, catalytic subunit [Lactobacillus reuteri DSM 20016] gi|183225240|dbj|BAG25757.1| putative oxidoreductase [Lactobacillus reuteri JCM 1112] gi|227071923|gb|EEI10209.1| dihydropyrimidine dehydrogenase [Lactobacillus reuteri MM2-3] gi|324977204|gb|EGC14155.1| dihydroorotate dehydrogenase [Lactobacillus reuteri MM4-1A] Length = 432 Score = 53.6 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 26/85 (30%), Gaps = 12/85 (14%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI---TIESGPRCHDGTRRTVRY 96 K + ++CI C C C A T + R + Sbjct: 323 KNIIPTNQLDRNYKVYPKIDWDKCIGCGRCFISCQDGAHQALTWDDEKRQPVFDK----- 377 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEG 121 KC+ C LC CPV AI G Sbjct: 378 ----SKCVGCQLCALVCPVGAIKLG 398 >gi|259502930|ref|ZP_05745832.1| dihydroorotate dehydrogenase [Lactobacillus antri DSM 16041] gi|259169123|gb|EEW53618.1| dihydroorotate dehydrogenase [Lactobacillus antri DSM 16041] Length = 431 Score = 53.6 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 23/82 (28%), Gaps = 6/82 (7%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 K ++CI C C C A + D Sbjct: 323 KNIVPTNQLDRDYKVYPKIDWDKCIGCGRCFISCQDGAH------QAMGWDADKRLPTFD 376 Query: 100 MIKCIYCGLCQEACPVDAIVEG 121 KC+ C LC CPV AI G Sbjct: 377 QSKCVGCQLCALVCPVGAIKLG 398 >gi|294783062|ref|ZP_06748386.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Fusobacterium sp. 1_1_41FAA] gi|294479940|gb|EFG27717.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Fusobacterium sp. 1_1_41FAA] Length = 1188 Score = 53.6 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 27/120 (22%), Positives = 39/120 (32%), Gaps = 20/120 (16%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT---IESGPRCHDGTRRTV 94 FE G+ + RG N ++CI C C +CP AI I + + Sbjct: 677 FENGTAAFEKRGVAVDVPIWN-LDKCIQCNQCSYVCPHAAIRAFLITDEEKVASPIEFST 735 Query: 95 -------------RYDIDMIKCIYCGLCQEACPVDAIVEGPN---FEFATETRQELYYDK 138 R + + C CG C CP A+ P E + + Y K Sbjct: 736 LKANGKGLENLSYRIQVTPLDCTGCGSCANVCPAKALDMNPIAVALENQEDKKASYIYSK 795 >gi|326201302|ref|ZP_08191174.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Clostridium papyrosolvens DSM 2782] gi|325988870|gb|EGD49694.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Clostridium papyrosolvens DSM 2782] Length = 623 Score = 53.6 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 31/70 (44%), Gaps = 10/70 (14%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 AL +E+C C C ICP QAI + Y I+ KCI CG C Sbjct: 563 KALAYIVIEKEKCKGCSKCARICPVQAIEG----------KIKEPYTINQSKCIKCGACL 612 Query: 111 EACPVDAIVE 120 EACP AI E Sbjct: 613 EACPFAAIKE 622 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 13/40 (32%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + + I+ KC C C CPV AI Sbjct: 551 HVIDKKCKTHTCKALAYIVIEKEKCKGCSKCARICPVQAI 590 >gi|116511282|ref|YP_808498.1| pyruvate:ferredoxin oxidoreductase, fusion of alpha, beta and gamma subunit [Lactococcus lactis subsp. cremoris SK11] gi|116106936|gb|ABJ72076.1| Pyruvate:ferredoxin oxidoreductase, fusion of alpha, beta and gamma subunit [Lactococcus lactis subsp. cremoris SK11] Length = 1223 Score = 53.6 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 34/104 (32%), Gaps = 17/104 (16%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 E T+ + AL + CI C C +CP AI + Sbjct: 665 DEPLGTTASEKRGIALEIPEWNAQACIQCNECSFVCPHAAIRPFLVDEDEWNQAPEGFHV 724 Query: 98 IDM--------------IKCIYCGLCQEACPV--DAIVEGPNFE 125 +D C CGLC EACP +A+ P +E Sbjct: 725 MDYKGSDGLKYRIQVSVEDCTGCGLCVEACPKKGEALKMIP-YE 767 >gi|144898936|emb|CAM75800.1| Hdr-like menaquinol oxidoreductase subunit [Magnetospirillum gryphiswaldense MSR-1] Length = 650 Score = 53.6 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 4/59 (6%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C C CP A++ + G Y KCI C +C + CP I G Sbjct: 593 CFECDNCVVFCPQTAVSRVAKNERTTGRYVETDY----SKCIGCHICADVCPTGFIQMG 647 >gi|622960|gb|AAA85495.1| pyruvate:ferredoxin oxidoreductase proprotein [Trichomonas vaginalis] Length = 1157 Score = 53.6 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 31/95 (32%), Gaps = 14/95 (14%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCHDGTRRTVRYDI 98 A+ E++CI C C +CP I + + R I Sbjct: 670 IAVTVPKWDEKKCIQCNTCAMVCPHAVICPFLLKPEEVQGLTTLKAKGKEIKDYQFRIQI 729 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 + C CG C +CP A+ + A +E Sbjct: 730 TPLDCTGCGTCVTSCPTKALSMT--YRNAKLDEEE 762 >gi|315186947|gb|EFU20705.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Spirochaeta thermophila DSM 6578] Length = 595 Score = 53.6 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 10/68 (14%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 L Y ++CI C +C CP AI+ E R + ID KCI CG C Sbjct: 535 VELVTYTILPDKCIGCGVCARRCPVNAISGE----------RKQPHVIDQDKCIKCGACY 584 Query: 111 EACPVDAI 118 EAC +AI Sbjct: 585 EACKFNAI 592 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 8/72 (11%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 I V Y I KCI CG+C CPV+AI + E +Q D+ Sbjct: 523 HIVEKRCPTGKCVELVTYTILPDKCIGCGVCARRCPVNAI--------SGERKQPHVIDQ 574 Query: 139 ERLLNNGDRWES 150 ++ + G +E+ Sbjct: 575 DKCIKCGACYEA 586 >gi|73668816|ref|YP_304831.1| formylmethanofuran dehydrogenase subunit F [Methanosarcina barkeri str. Fusaro] gi|1124960|emb|CAA63629.1| molybdenum formylmethanofuran dehydrogenase subunit fmdF [Methanosarcina barkeri] gi|72395978|gb|AAZ70251.1| formylmethanofuran dehydrogenase, subunit F [Methanosarcina barkeri str. Fusaro] gi|1587237|prf||2206350E formylmethanofuran dehydrogenase Length = 346 Score = 53.6 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 31/66 (46%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 E C+ C LCE ICP I + + + +ID C++CG C CPV+AI Sbjct: 106 NESCVHCGLCEDICPQGCIEVTRDISADGKLKLVGKTNIDTECCVHCGWCAAVCPVNAIS 165 Query: 120 EGPNFE 125 FE Sbjct: 166 VEKPFE 171 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 31/87 (35%), Gaps = 4/87 (4%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 + + + + E+ C C C +CPA AI + Sbjct: 150 VHCGWCAAVCPVNAISVEKPFEGHWARDEDVCQTCHTCVEVCPANAIFNKKAKPGE---- 205 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAI 118 R + CIYCG C ACPVDAI Sbjct: 206 RVEKITHRPDACIYCGACAVACPVDAI 232 Score = 42.0 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 3/68 (4%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM---IKCIYCGLCQEACPV 115 E C+ C +C CP A+ ++ + R C++CGLC++ CP Sbjct: 62 EREACLVCGICAKACPTGALEMKQEGKTITDKSYLFRAMKPTSVNESCVHCGLCEDICPQ 121 Query: 116 DAIVEGPN 123 I + Sbjct: 122 GCIEVTRD 129 Score = 41.2 bits (95), Expect = 0.052, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 8/63 (12%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E C+ C C A+CP AI++E + D C C C E CP + Sbjct: 143 NIDTECCVHCGWCAAVCPVNAISVEK--------PFEGHWARDEDVCQTCHTCVEVCPAN 194 Query: 117 AIV 119 AI Sbjct: 195 AIF 197 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 1/65 (1%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM-IKCIYCGLCQEACPVDAI 118 E+CI C C CP + I + G ++ C+ CG+C +ACP A+ Sbjct: 22 PEKCIGCGTCVQACPKGNLAIGAVGAITRGLVDADFLEMKEREACLVCGICAKACPTGAL 81 Query: 119 VEGPN 123 Sbjct: 82 EMKQE 86 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 17/78 (21%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRR-----------------TVRYDIDM 100 + + CI C C CP AI + D ++ + D Sbjct: 212 HRPDACIYCGACAVACPVDAIDVRKTAILPDMEKKGVLEKKLLEKPAPETMLRTCLETDE 271 Query: 101 IKCIYCGLCQEACPVDAI 118 C+ CG C CPV+A+ Sbjct: 272 AACLGCGNCVIVCPVNAL 289 Score = 38.5 bits (88), Expect = 0.32, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 28/93 (30%), Gaps = 9/93 (9%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES---------GPRCHDG 89 EK E C+ C C +CP A++ + G Sbjct: 250 EKKLLEKPAPETMLRTCLETDEAACLGCGNCVIVCPVNALSDCELAAGHLNNMDEKALLG 309 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + ID +C G C CPVDAI Sbjct: 310 VKNGRIKVIDQDRCGADGACAMICPVDAIRLVK 342 >gi|312144646|ref|YP_003996092.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Halanaerobium sp. 'sapolanicus'] gi|311905297|gb|ADQ15738.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Halanaerobium sp. 'sapolanicus'] Length = 1178 Score = 53.6 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 28/97 (28%), Gaps = 16/97 (16%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPR 85 S + A+ ++ CI C C CP A Sbjct: 667 PPGLSKYEKRGIAIDVPDWKDDICIQCNQCALACPHAVIRPFLLDEEEVANAPEGFKTIE 726 Query: 86 CHDGTRRTVRYDID--MIKCIYCGLCQEACPVDAIVE 120 + Y I C CG+C + CPV+A+ Sbjct: 727 AKGKQLEGLEYKIQVSPYDCTGCGVCVDVCPVNALEM 763 >gi|262276174|ref|ZP_06053983.1| iron-sulfur cluster-binding protein [Grimontia hollisae CIP 101886] gi|262219982|gb|EEY71298.1| iron-sulfur cluster-binding protein [Grimontia hollisae CIP 101886] Length = 570 Score = 53.6 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 19/102 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C A+CP A++ G+R + + C+ CGLC+ +CP I Sbjct: 436 HDCTLCMGCVAVCPTGALS-------SIGSRPGITFR--EQDCVQCGLCESSCPESVITL 486 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPY 162 P F + +E RQ+ +E L +E E I P+ Sbjct: 487 EPRFNWNSEQRQQ----REIL------YEEEAAACITCGKPF 518 Score = 35.1 bits (79), Expect = 3.2, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 11/53 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C CPA+A++ + I+ C G C CP +AI Sbjct: 211 CTRCIDACPAEALSTIN-----------QTITINPYLCQGIGSCATVCPTEAI 252 >gi|225572042|ref|ZP_03780906.1| hypothetical protein RUMHYD_00336 [Blautia hydrogenotrophica DSM 10507] gi|225040477|gb|EEG50723.1| hypothetical protein RUMHYD_00336 [Blautia hydrogenotrophica DSM 10507] Length = 501 Score = 53.6 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 7/85 (8%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGL 108 + +CI C C+++CP AI+ ++ P + R I KC+ CG+ Sbjct: 144 YSHIDQTKCIKCGKCKSVCPYDAISHKTRPCERACGVNAITSDQQGRATILNDKCVSCGM 203 Query: 109 CQEACPVDAI-VEGPNFEFATETRQ 132 C +CP AI + F+ A R+ Sbjct: 204 CMVSCPFGAISDKSQIFQLAHALRE 228 Score = 40.5 bits (93), Expect = 0.088, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 25/66 (37%), Gaps = 13/66 (19%) Query: 57 PNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 C C C ICP AI++ G ID KCI CG C+ CP Sbjct: 115 YEVSNICKGCVAHPCMLICPKGAISMVDGYSH-----------IDQTKCIKCGKCKSVCP 163 Query: 115 VDAIVE 120 DAI Sbjct: 164 YDAISH 169 >gi|123476296|ref|XP_001321321.1| pyruvate:ferredoxin oxidoreductase BI [Trichomonas vaginalis G3] gi|121904145|gb|EAY09098.1| pyruvate:ferredoxin oxidoreductase BI [Trichomonas vaginalis G3] Length = 1157 Score = 53.6 bits (127), Expect = 8e-06, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 31/95 (32%), Gaps = 14/95 (14%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCHDGTRRTVRYDI 98 A+ E++CI C C +CP I + + R I Sbjct: 670 IAVTVPKWDEKKCIQCNTCAMVCPHAVICPFLLKPEEVQGLTTLKAKGKEIKDYQFRIQI 729 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 + C CG C +CP A+ + A +E Sbjct: 730 TPLDCTGCGTCVTSCPTKALSMT--YRNAKLDEEE 762 >gi|311696283|gb|ADP99156.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [marine bacterium HP15] Length = 1199 Score = 53.6 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 34/122 (27%), Gaps = 27/122 (22%) Query: 29 KAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAICPA----------- 75 K + P T S + AL + C+ C C ICP Sbjct: 658 KLPVSAFPPDGTWPTGTSQYEKRTIALEIPIWESDLCVQCNFCAMICPHTAITSKVFEPE 717 Query: 76 ------QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV--------DAIVEG 121 +A + + + R + C CGLC E CP AI Sbjct: 718 SVKGAPEAFEVVPETQTSELEGLDYRIQVAPDDCTGCGLCVEVCPAKDRTQPKRKAINMQ 777 Query: 122 PN 123 P Sbjct: 778 PI 779 >gi|15643163|ref|NP_228207.1| glutamate synthase, alpha subunit [Thermotoga maritima MSB8] gi|148269661|ref|YP_001244121.1| glutamate synthase (NADPH) [Thermotoga petrophila RKU-1] gi|170288336|ref|YP_001738574.1| glutamate synthase (NADPH) [Thermotoga sp. RQ2] gi|281411629|ref|YP_003345708.1| glutamate synthase (NADPH) [Thermotoga naphthophila RKU-10] gi|4980901|gb|AAD35482.1|AE001719_8 glutamate synthase, alpha subunit [Thermotoga maritima MSB8] gi|147735205|gb|ABQ46545.1| glutamate synthase (NADPH) GltB2 subunit [Thermotoga petrophila RKU-1] gi|170175839|gb|ACB08891.1| Glutamate synthase (NADPH) [Thermotoga sp. RQ2] gi|281372732|gb|ADA66294.1| Glutamate synthase (NADPH) [Thermotoga naphthophila RKU-10] Length = 507 Score = 53.6 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 31/100 (31%), Gaps = 20/100 (20%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 K P F + +CI C C +C A + Sbjct: 3 KRKVPPEFV-------VERDDYKCIRCLACVRVCSYGANFYDENANRVYTEN-------- 47 Query: 100 MIKCIYCGLCQEACPVDAIVEGPN-FE---FATETRQELY 135 KC+ C C+ CP +AI N F+ A T + L Sbjct: 48 -TKCVGCHFCEAICPTEAITVRKNDFDIRPLAHWTPEHLI 86 >gi|313114957|ref|ZP_07800452.1| 4Fe-4S binding domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310622717|gb|EFQ06177.1| 4Fe-4S binding domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 516 Score = 53.6 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 8/86 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112 +++CI C C +CP AI P + D ID KC+ CG C Sbjct: 152 DQDKCIKCGRCVGVCPYNAIVKTERPCAAACGMGAIHSDELGRAEIDYSKCVSCGQCLVN 211 Query: 113 CPVDAI-VEGPNFEF-ATETRQELYY 136 CP AI +G ++ R + Y Sbjct: 212 CPFGAIADKGQIYQLIQGFNRGDRIY 237 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 12/85 (14%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P R L + + + C+A C +CP +AIT ESG R Sbjct: 102 PLVNVIKFACNRCPEKLVKVSDLCQGCLA-HPCMEVCPKKAITWESG-----------RS 149 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEG 121 ID KCI CG C CP +AIV+ Sbjct: 150 IIDQDKCIKCGRCVGVCPYNAIVKT 174 >gi|296132262|ref|YP_003639509.1| NADH dehydrogenase (quinone) [Thermincola sp. JR] gi|296030840|gb|ADG81608.1| NADH dehydrogenase (quinone) [Thermincola potens JR] Length = 619 Score = 53.6 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 32/70 (45%), Gaps = 10/70 (14%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 AL Y ++C C C+ +CP AI+ E ID KCI CG C E Sbjct: 560 ALLEYKIDPDKCKGCGACKKVCPVGAISGEKKEAHE----------IDAGKCIKCGSCIE 609 Query: 112 ACPVDAIVEG 121 C DAI++G Sbjct: 610 KCKFDAIIKG 619 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 18/40 (45%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 I + + Y ID KC CG C++ CPV AI Sbjct: 547 HIHNKKCTAGVCTALLEYKIDPDKCKGCGACKKVCPVGAI 586 >gi|325265417|ref|ZP_08132141.1| Fe-hydrogenase large subunit family protein [Clostridium sp. D5] gi|324029418|gb|EGB90709.1| Fe-hydrogenase large subunit family protein [Clostridium sp. D5] Length = 503 Score = 53.6 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQ 110 +E+CI C C+++CP AI + P + G+ + R ID KC+ CG+C Sbjct: 148 FIDQEKCIKCGKCKSVCPYDAIAKKERPCKNACGVSAIGSDKYGRAFIDPEKCVSCGMCM 207 Query: 111 EACPVDAI 118 +CP AI Sbjct: 208 VSCPFGAI 215 Score = 41.2 bits (95), Expect = 0.046, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 13/64 (20%) Query: 57 PNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 C C C+ +CP AI+ +G ID KCI CG C+ CP Sbjct: 117 YEVSNICKGCLAHPCQEVCPKGAISFVNGKSF-----------IDQEKCIKCGKCKSVCP 165 Query: 115 VDAI 118 DAI Sbjct: 166 YDAI 169 >gi|260892290|ref|YP_003238387.1| glutamate synthase alpha subunit domain protein [Ammonifex degensii KC4] gi|260864431|gb|ACX51537.1| glutamate synthase alpha subunit domain protein [Ammonifex degensii KC4] Length = 635 Score = 53.6 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 28/64 (43%), Gaps = 7/64 (10%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C +C ICP QAIT RY+ D +CI CG C +ACP P Sbjct: 578 CRDCGICLNICPQQAITRHQEGNG-------WRYEADPQRCIGCGFCADACPCGVWELRP 630 Query: 123 NFEF 126 N E Sbjct: 631 NQEP 634 >gi|257053166|ref|YP_003130999.1| NADH dehydrogenase (quinone) [Halorhabdus utahensis DSM 12940] gi|256691929|gb|ACV12266.1| NADH dehydrogenase (quinone) [Halorhabdus utahensis DSM 12940] Length = 634 Score = 53.6 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 32/84 (38%), Gaps = 11/84 (13%) Query: 38 FEKGSTSPRFRGEHALR-RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 E+ G Y E CI C+ C CP AI+ E G + Sbjct: 559 DEECPAGDCELGSGEHAGTYKIIAEDCIGCQQCVDACPIDAISGEPGE----------VH 608 Query: 97 DIDMIKCIYCGLCQEACPVDAIVE 120 +ID C+ CG C + CPVD I Sbjct: 609 EIDPAACVGCGQCVDPCPVDTIEL 632 Score = 38.9 bits (89), Expect = 0.21, Method: Composition-based stats. Identities = 13/27 (48%), Positives = 15/27 (55%) Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGP 122 Y I CI C C +ACP+DAI P Sbjct: 578 YKIIAEDCIGCQQCVDACPIDAISGEP 604 >gi|255690239|ref|ZP_05413914.1| Fe-hydrogenase large subunit family protein [Bacteroides finegoldii DSM 17565] gi|260624258|gb|EEX47129.1| Fe-hydrogenase large subunit family protein [Bacteroides finegoldii DSM 17565] Length = 489 Score = 53.6 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 6/68 (8%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQEA 112 + C++C +C CP AI P + ID KCIYCG C A Sbjct: 148 DHDTCVSCGICHKSCPYHAIVYIPVPCEESCPVKAISKDEHGIEHIDESKCIYCGKCLNA 207 Query: 113 CPVDAIVE 120 CP AI E Sbjct: 208 CPFGAIFE 215 Score = 39.3 bits (90), Expect = 0.20, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 31/97 (31%), Gaps = 12/97 (12%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------------ITIESGPR 85 E S R + C+ + C + + P+ Sbjct: 75 DEVAPLSDYARMALSRPEPNKENIMCVIDEACSSCVQINYEITNLCRGCVARSCYMNCPK 134 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 ++ + ID C+ CG+C ++CP AIV P Sbjct: 135 DAIRFKKNGQAMIDHDTCVSCGICHKSCPYHAIVYIP 171 >gi|160942972|ref|ZP_02090210.1| hypothetical protein FAEPRAM212_00449 [Faecalibacterium prausnitzii M21/2] gi|158445666|gb|EDP22669.1| hypothetical protein FAEPRAM212_00449 [Faecalibacterium prausnitzii M21/2] Length = 538 Score = 53.6 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 8/86 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112 +++CI C C +CP AI P + D ID KC+ CG C Sbjct: 173 DQDKCIKCGRCVTVCPYNAIVKTERPCAAACGMGAIHSDELGRAEIDYSKCVSCGQCLVN 232 Query: 113 CPVDAI-VEGPNFEF-ATETRQELYY 136 CP AI +G ++ R + Y Sbjct: 233 CPFGAIADKGQIYQLIQGFNRGDRIY 258 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 12/85 (14%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P R L + + + C+A C +CP +AIT ESG R Sbjct: 123 PLVNVIKFACNRCPEKLVKVSDLCQGCLA-HPCMEVCPKKAITWESG-----------RS 170 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEG 121 ID KCI CG C CP +AIV+ Sbjct: 171 TIDQDKCIKCGRCVTVCPYNAIVKT 195 >gi|18313615|ref|NP_560282.1| polyferredoxin [Pyrobaculum aerophilum str. IM2] gi|18161161|gb|AAL64464.1| polyferredoxin [Pyrobaculum aerophilum str. IM2] Length = 370 Score = 53.6 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 32/125 (25%), Positives = 43/125 (34%), Gaps = 19/125 (15%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPN----GEERCIACKLCEAICPAQAITIESGPRCH 87 T P E + R R + + +CI C LC CPA AI Sbjct: 52 WTPLPPAEAREATRRDFLTGGFIRLRDTVVIDQSKCIWCGLCADYCPASAIEYVERKNVK 111 Query: 88 DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE-----GPNFEFATETRQELYYDKERLL 142 + CI CGLC CPVDA+ G + +RQ L + + Sbjct: 112 ----------VKYESCIDCGLCNSVCPVDAVKMPSLPDGYIADLVKTSRQPLKFICDYAF 161 Query: 143 NNGDR 147 +GD Sbjct: 162 EDGDE 166 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 18/52 (34%), Gaps = 11/52 (21%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 C C C CP A+++ + CI CG+C CP Sbjct: 259 CTLCGACVNACPTDALSVRGYE-----------LRLVPALCIACGVCVAKCP 299 >gi|325845863|ref|ZP_08169061.1| protein HymB [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481769|gb|EGC84801.1| protein HymB [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 526 Score = 53.6 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 10/60 (16%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E+CI C C+ +CP AI+ E + R++ID KCI CG C E CP++AI Sbjct: 476 EKCIGCGKCKMLCPVGAISGE----------KRNRHEIDHDKCIKCGQCMENCPIEAIAL 525 Score = 38.9 bits (89), Expect = 0.23, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 9/76 (11%) Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134 QA E+ R + Y I KCI CG C+ CPV AI + E R Sbjct: 451 YQAHVGENKTCPAKRCRSLLSYLIG-EKCIGCGKCKMLCPVGAI--------SGEKRNRH 501 Query: 135 YYDKERLLNNGDRWES 150 D ++ + G E+ Sbjct: 502 EIDHDKCIKCGQCMEN 517 >gi|89897634|ref|YP_521121.1| pyruvate ferredoxin oxidoreductase [Desulfitobacterium hafniense Y51] gi|219670762|ref|YP_002461197.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Desulfitobacterium hafniense DCB-2] gi|89337082|dbj|BAE86677.1| pyruvate ferredoxin oxidoreductase [Desulfitobacterium hafniense Y51] gi|219541022|gb|ACL22761.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Desulfitobacterium hafniense DCB-2] Length = 1174 Score = 53.6 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 45/137 (32%), Gaps = 34/137 (24%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG ++CI C C +CP QA + + Sbjct: 675 RGIAVYVPEWQ-IDKCIQCNQCAYVCPHATIRSFLLDDQESAQAPDTFKTKKPINKKLEG 733 Query: 94 VRYDID--MIKCIYCGLCQEACPVD--AIVEGP----------NFEFATETRQELYYDKE 139 Y I + C CG C + CP A+V P N+EFA +K Sbjct: 734 YHYRIQVSPLDCTGCGNCADICPAPGKALVMEPADHEIEMEAENWEFAMT-----VTEKR 788 Query: 140 RLLNNGDRWESEIVRNI 156 LL+ + S++ R + Sbjct: 789 DLLDVKTLFGSQLARPL 805 >gi|294495923|ref|YP_003542416.1| formylmethanofuran dehydrogenase, subunit F [Methanohalophilus mahii DSM 5219] gi|292666922|gb|ADE36771.1| formylmethanofuran dehydrogenase, subunit F [Methanohalophilus mahii DSM 5219] Length = 341 Score = 53.6 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 35/74 (47%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C+ C LCE +CP I ++ + + + ID C++CG C+ CPVDAI Sbjct: 101 NDDCVHCGLCEQVCPQGCIEVDQWLSNDNAAKVDGQTTIDQECCVHCGWCESVCPVDAIE 160 Query: 120 EGPNFEFATETRQE 133 FE ++ Sbjct: 161 VEKPFEGTWFRDED 174 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 28/64 (43%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 E+CI C C +CP + + I S G +I CI CG+C + CP A+ Sbjct: 18 PEKCIGCGTCVMVCPKETLVIGSVGPVARGLIDKEFLEIRPNTCITCGMCSKVCPTGALE 77 Query: 120 EGPN 123 + Sbjct: 78 MRED 81 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 3/79 (3%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR---TVRYDID 99 P RG CI C +C +CP A+ + + + ++ Sbjct: 41 VGPVARGLIDKEFLEIRPNTCITCGMCSKVCPTGALEMREDGKPVEEKTYLINAIKPTTV 100 Query: 100 MIKCIYCGLCQEACPVDAI 118 C++CGLC++ CP I Sbjct: 101 NDDCVHCGLCEQVCPQGCI 119 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 5/110 (4%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 + + + E+ C AC+ C +CP A+ + Sbjct: 145 VHCGWCESVCPVDAIEVEKPFEGTWFRDEDVCQACRTCVDVCPCNALFNPDWEAGERVDK 204 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERL 141 R CIYCG C +CPV AI A E ++ ++K+ L Sbjct: 205 VAQR----PDACIYCGACAVSCPVQAIDVRKT-AIAAEMEKKKVFEKKLL 249 Score = 38.9 bits (89), Expect = 0.24, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 26/92 (28%), Gaps = 9/92 (9%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES---------GPRCHD 88 FEK + E C+ C C +CP A + + Sbjct: 244 FEKKLLDKPSVKPTLTSKLVTDEYDCLGCGNCVIVCPVNAYANKELAAGHLNNMDEKALL 303 Query: 89 GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 +D C CG C CP +AI Sbjct: 304 EVENGAVNVVDQDVCGSCGACAMICPTNAIWL 335 Score = 38.5 bits (88), Expect = 0.29, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 17/75 (22%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK----------------- 102 + CI C C CP QAI + + ++ V + K Sbjct: 209 PDACIYCGACAVSCPVQAIDVRKTAIAAEMEKKKVFEKKLLDKPSVKPTLTSKLVTDEYD 268 Query: 103 CIYCGLCQEACPVDA 117 C+ CG C CPV+A Sbjct: 269 CLGCGNCVIVCPVNA 283 >gi|212696952|ref|ZP_03305080.1| hypothetical protein ANHYDRO_01515 [Anaerococcus hydrogenalis DSM 7454] gi|212676040|gb|EEB35647.1| hypothetical protein ANHYDRO_01515 [Anaerococcus hydrogenalis DSM 7454] Length = 526 Score = 53.6 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 33/60 (55%), Gaps = 10/60 (16%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E+CI C C+ +CP AI+ E + R++ID KCI CG C E CP++AI Sbjct: 476 EKCIGCGKCKMLCPVGAISGE----------KRNRHEIDHDKCIKCGQCMENCPIEAIAL 525 Score = 38.9 bits (89), Expect = 0.23, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 9/76 (11%) Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134 QA E+ R + Y I KCI CG C+ CPV AI + E R Sbjct: 451 YQAHVGENKTCPAKRCRSLLSYLIG-EKCIGCGKCKMLCPVGAI--------SGEKRNRH 501 Query: 135 YYDKERLLNNGDRWES 150 D ++ + G E+ Sbjct: 502 EIDHDKCIKCGQCMEN 517 >gi|182419411|ref|ZP_02950663.1| iron-dependent hydrogenase [Clostridium butyricum 5521] gi|237666562|ref|ZP_04526547.1| ferredoxin hydrogenase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376742|gb|EDT74314.1| iron-dependent hydrogenase [Clostridium butyricum 5521] gi|237657761|gb|EEP55316.1| ferredoxin hydrogenase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 495 Score = 53.6 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 7/69 (10%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIKCIYCGLC 109 +C C +C+ CP AI + P + + +I KCI CG C Sbjct: 135 HIDTTKCKECGMCKKACPYDAIAQDMRPCKRACPTGAINFNKYDLSTEITESKCINCGAC 194 Query: 110 QEACPVDAI 118 +CP AI Sbjct: 195 MASCPFGAI 203 Score = 38.5 bits (88), Expect = 0.29, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 13/58 (22%) Query: 63 CIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C C+++C AI+ +G ID KC CG+C++ACP DAI Sbjct: 110 CRNCIAHKCQSVCNFGAISYVNGRAH-----------IDTTKCKECGMCKKACPYDAI 156 >gi|206901606|ref|YP_002250206.1| dihydroorotate dehydrogenase superfamily [Dictyoglomus thermophilum H-6-12] gi|206740709|gb|ACI19767.1| dihydroorotate dehydrogenase superfamily [Dictyoglomus thermophilum H-6-12] Length = 390 Score = 53.6 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 12/68 (17%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L + C +C +C+ +C A + G I C CGLC + Sbjct: 324 LYEAYINPDLCTSCGICKKVCIYDAPVEKEGK------------YIITDLCDGCGLCVKL 371 Query: 113 CPVDAIVE 120 CPV AI Sbjct: 372 CPVRAISM 379 >gi|309389693|gb|ADO77573.1| cobyrinic acid ac-diamide synthase [Halanaerobium praevalens DSM 2228] Length = 288 Score = 53.6 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 39/109 (35%), Gaps = 25/109 (22%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE-- 120 CI C C C AIT+ +++ +KC CG+C E CP A+ Sbjct: 68 CIDCGKCYDHCRYNAITVND-------------FEVKKLKCEGCGVCVEVCPTKALKLEA 114 Query: 121 --GPNFEFATETRQELYY--------DKERLLNNGDRWESEIVRNIVTD 159 N A ++ + +L++ + +EI + D Sbjct: 115 VATGNIYQAESQFGDMVHARLFPGADTSGKLVSEVKKKTAEIAKKKEKD 163 >gi|294102249|ref|YP_003554107.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Aminobacterium colombiense DSM 12261] gi|293617229|gb|ADE57383.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Aminobacterium colombiense DSM 12261] Length = 220 Score = 53.6 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 9/92 (9%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103 P + R +ERCI CKLC +CPA AI + + I + +C Sbjct: 47 PPIEPQGYFRGRLDYDKERCIGCKLCIRVCPANAIEFLEEEK---------KIQIHVDRC 97 Query: 104 IYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 +C C E CPV + + ++ R+ Sbjct: 98 CFCAQCTEICPVKCLSMSKEYLISSYDRKAQI 129 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 10/66 (15%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 +Y EE+CI C C CP AI+ E + ID KC+ CG C E C Sbjct: 149 VKYEVDEEKCIGCTKCARNCPVNAISGELKKP----------HVIDKEKCVGCGKCAELC 198 Query: 114 PVDAIV 119 P DAI Sbjct: 199 PKDAIH 204 Score = 33.9 bits (76), Expect = 6.8, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 15/38 (39%) Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 P R D D +CI C LC CP +AI Sbjct: 46 NPPIEPQGYFRGRLDYDKERCIGCKLCIRVCPANAIEF 83 >gi|302875667|ref|YP_003844300.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Clostridium cellulovorans 743B] gi|307688105|ref|ZP_07630551.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Clostridium cellulovorans 743B] gi|302578524|gb|ADL52536.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Clostridium cellulovorans 743B] Length = 1179 Score = 53.6 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 27/93 (29%), Gaps = 19/93 (20%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQ----------------AITIESGPRCHDGTR 91 RG + ++CI C C +CP A Sbjct: 675 RGIAVMLPQWQ-IDKCIQCGQCAFVCPHATIRQFVLDKGEQEKAPATFATKKATGRGLEE 733 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVD--AIVEGP 122 R I + C CG C + CP AI+ P Sbjct: 734 YQYRIQIAPMDCTGCGNCADVCPAPGKAIIMQP 766 >gi|238021504|ref|ZP_04601930.1| hypothetical protein GCWU000324_01404 [Kingella oralis ATCC 51147] gi|237868484|gb|EEP69490.1| hypothetical protein GCWU000324_01404 [Kingella oralis ATCC 51147] Length = 324 Score = 53.6 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 24/66 (36%), Gaps = 10/66 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C C CP AI S + + +C CGLC CPVD Sbjct: 73 WIDEAVCIGCTACIRACPVDAIMGASKQ----------MHTVLADECTGCGLCVAPCPVD 122 Query: 117 AIVEGP 122 I P Sbjct: 123 CIYMRP 128 >gi|295103488|emb|CBL01032.1| Iron only hydrogenase large subunit, C-terminal domain [Faecalibacterium prausnitzii SL3/3] Length = 517 Score = 53.6 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 8/86 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112 +++CI C C +CP AI P + D ID KC+ CG C Sbjct: 152 DQDKCIKCGRCVTVCPYNAIVKTERPCAAACGMGAIHSDELGRAEIDYSKCVSCGQCLVN 211 Query: 113 CPVDAI-VEGPNFEF-ATETRQELYY 136 CP AI +G ++ R + Y Sbjct: 212 CPFGAIADKGQIYQLIQGFNRGDRIY 237 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 12/85 (14%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P R L + + + C+A C +CP +AIT ESG R Sbjct: 102 PLVNVIKFACNRCPEKLVKVSDLCQGCLA-HPCMEVCPKKAITWESG-----------RS 149 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEG 121 ID KCI CG C CP +AIV+ Sbjct: 150 TIDQDKCIKCGRCVTVCPYNAIVKT 174 >gi|156743974|ref|YP_001434103.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [Roseiflexus castenholzii DSM 13941] gi|156235302|gb|ABU60085.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Roseiflexus castenholzii DSM 13941] Length = 1192 Score = 53.6 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 29/104 (27%), Gaps = 24/104 (23%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE----------------SGPRCHDG 89 + AL + CI C C +CP I + S R + Sbjct: 673 WEKRTIALEVPIWEPDICIQCGKCAYVCPHAVIRTKVYEPALLEGAPETFLSSEARFKEF 732 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPV--------DAIVEGPNFE 125 I C CGLC E CP AI P E Sbjct: 733 PGYKYTLAISPEDCTGCGLCVEVCPAKDKRQVGRKAINMKPLVE 776 >gi|238924739|ref|YP_002938255.1| ferredoxin hydrogenase [Eubacterium rectale ATCC 33656] gi|238876414|gb|ACR76121.1| ferredoxin hydrogenase [Eubacterium rectale ATCC 33656] gi|291526109|emb|CBK91696.1| Iron only hydrogenase large subunit, C-terminal domain [Eubacterium rectale DSM 17629] Length = 485 Score = 53.6 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 26/68 (38%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110 ++C C C CP AI P + Y+ ID KCI CG C Sbjct: 124 HIDPQKCKECGRCAQACPYNAIAHLKRPCKFSCPVNAITYNEYGISVIDESKCIRCGKCI 183 Query: 111 EACPVDAI 118 +CP AI Sbjct: 184 HSCPFGAI 191 >gi|206900762|ref|YP_002250635.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit [Dictyoglomus thermophilum H-6-12] gi|206739865|gb|ACI18923.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit [Dictyoglomus thermophilum H-6-12] Length = 596 Score = 53.6 bits (127), Expect = 9e-06, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 35/97 (36%), Gaps = 15/97 (15%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 L+Y F+ + + +K AL Y E C C +C CP AI + Sbjct: 512 TTLKY-FRDEYLAHIRDKKCPAKVCT----ALIHYEVIREECRKCSICFRNCPVGAIYKD 566 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 Y ID KC CG+C + CP I Sbjct: 567 EDG----------TYVIDQSKCTKCGICFQVCPFKVI 593 >gi|291527156|emb|CBK92742.1| Iron only hydrogenase large subunit, C-terminal domain [Eubacterium rectale M104/1] Length = 485 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 26/68 (38%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110 ++C C C CP AI P + Y+ ID KCI CG C Sbjct: 124 HIDPQKCKECGRCAQACPYNAIAHLKRPCKFSCPVNAITYNEYGISVIDESKCIRCGKCI 183 Query: 111 EACPVDAI 118 +CP AI Sbjct: 184 HSCPFGAI 191 >gi|20094920|ref|NP_614767.1| flavoprotein [Methanopyrus kandleri AV19] gi|19888159|gb|AAM02697.1| Archaea-specific flavoprotein [Methanopyrus kandleri AV19] Length = 246 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 11/74 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + Y ERC C +C CP AI + G I +++C+ CG C EA Sbjct: 140 ITPYMVLRERCEGCGICVDACPRSAIDMVDGKAF-----------IRLLRCVGCGKCAEA 188 Query: 113 CPVDAIVEGPNFEF 126 CP DAI G +E Sbjct: 189 CPEDAIHGGLEYEM 202 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 16/44 (36%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + R Y + +C CG+C +ACP AI Sbjct: 126 WVVPCDYEEGKIRTITPYMVLRERCEGCGICVDACPRSAIDMVD 169 >gi|312113374|ref|YP_004010970.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Rhodomicrobium vannielii ATCC 17100] gi|311218503|gb|ADP69871.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Rhodomicrobium vannielii ATCC 17100] Length = 651 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 4/59 (6%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C C CP +AI G T Y KC+ C +CQ+ CP I G Sbjct: 594 CFECDACLIFCPQKAIDRVPKKERAIGRYVTTDYK----KCVGCHICQDVCPTGYIQMG 648 >gi|255994291|ref|ZP_05427426.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Eubacterium saphenum ATCC 49989] gi|255993004|gb|EEU03093.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Eubacterium saphenum ATCC 49989] Length = 1189 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 28/140 (20%), Positives = 43/140 (30%), Gaps = 31/140 (22%) Query: 27 FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA--------- 77 FK + +P G+T RG E CI C C +CP Sbjct: 668 LFKDRADGEFP--TGTTQYEKRGVAVNVPTWR-SETCIQCNQCAFVCPHACIRPVLVDAD 724 Query: 78 -------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV--DAIVEGP------ 122 + R + + C+ CG C CP ++V P Sbjct: 725 EKAKAPSQFKTEAAKGKGFEGLEFRMQVSPLDCLGCGSCANVCPTKEKSLVMTPLADNMD 784 Query: 123 ---NFEFATETRQ-ELYYDK 138 N+E+A E + + +K Sbjct: 785 EKENWEYAMEIPEKDNIMEK 804 >gi|125623314|ref|YP_001031797.1| NifJ protein [Lactococcus lactis subsp. cremoris MG1363] gi|124492122|emb|CAL97051.1| NifJ protein [Lactococcus lactis subsp. cremoris MG1363] gi|300070063|gb|ADJ59463.1| NifJ protein [Lactococcus lactis subsp. cremoris NZ9000] Length = 1223 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 34/104 (32%), Gaps = 17/104 (16%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 E T+ + AL + CI C C +CP AI + Sbjct: 665 DEPLGTTVSEKRGIALEVPEWNAQACIQCNECSFVCPHAAIRPFLVDEDEWNQAPEGFHV 724 Query: 98 IDM--------------IKCIYCGLCQEACPV--DAIVEGPNFE 125 +D C CGLC EACP +A+ P +E Sbjct: 725 MDYKGSDGLKYRIQVSVEDCTGCGLCVEACPKKGEALKMIP-YE 767 >gi|114567049|ref|YP_754203.1| MinD family protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337984|gb|ABI68832.1| MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 288 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 19/85 (22%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 EE CI+C LC +C AI+ E Y + + C CG C++ CPV+ Sbjct: 62 HIDEESCISCGLCMELCRFDAISSE--------------YQVLPLFCEGCGFCEKICPVE 107 Query: 117 AIVE-----GPNFEFATETRQELYY 136 AI G FE +++ + Sbjct: 108 AIAMQARSSGHCFEGVFNQKKQNLF 132 >gi|312140996|ref|YP_004008332.1| ferredoxin domain oxidoreductase [Rhodococcus equi 103S] gi|311890335|emb|CBH49653.1| ferredoxin domain oxidoreductase [Rhodococcus equi 103S] Length = 578 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 3/66 (4%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + C C + CP I T I+ CI CG C +AC Sbjct: 14 NMAYVITQTCCNDASCVSACPVNCIHPTPEEAE---FATTEMLYIEPQACIDCGACVDAC 70 Query: 114 PVDAIV 119 PV+AI Sbjct: 71 PVNAIF 76 >gi|114320439|ref|YP_742122.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Alkalilimnicola ehrlichii MLHE-1] gi|114226833|gb|ABI56632.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Alkalilimnicola ehrlichii MLHE-1] Length = 566 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 46/121 (38%), Gaps = 17/121 (14%) Query: 20 FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79 L L + F+ P + + +P L + C C C +CP+ A+T Sbjct: 394 LGLALDHLFRN---APAPAREVALAPGAPFGEVLV----NTDACTLCMACAQVCPSSALT 446 Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF-ATETRQELYYDK 138 +V+ C+ CGLCQ ACP +A+ P + E RQ ++ Sbjct: 447 DNPE---------SVQLRFIEDNCVQCGLCQTACPEEAVSLRPRLLYDGPERRQARVLNE 497 Query: 139 E 139 E Sbjct: 498 E 498 >gi|302391064|ref|YP_003826884.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Acetohalobium arabaticum DSM 5501] gi|302203141|gb|ADL11819.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Acetohalobium arabaticum DSM 5501] Length = 600 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 25/63 (39%), Positives = 29/63 (46%), Gaps = 10/63 (15%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 Y EE CI C C +CP AI E + ID +CI CG C + CPV Sbjct: 545 YVIDEEDCIGCTSCVDVCPVDAIEGEKKEA----------HVIDTDECINCGSCVDECPV 594 Query: 116 DAI 118 DAI Sbjct: 595 DAI 597 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 23/66 (34%), Gaps = 8/66 (12%) Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134 +A E + Y ID CI C C + CPVDAI E ++ Sbjct: 524 YEAHIYEETCPAGNCQELVAGYVIDEEDCIGCTSCVDVCPVDAIE--------GEKKEAH 575 Query: 135 YYDKER 140 D + Sbjct: 576 VIDTDE 581 >gi|123455670|ref|XP_001315577.1| 4Fe-4S binding domain containing protein [Trichomonas vaginalis G3] gi|121898258|gb|EAY03354.1| 4Fe-4S binding domain containing protein [Trichomonas vaginalis G3] Length = 499 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 6/65 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C C +CP A+T + + + + C+ CG C + CP AI Sbjct: 130 NHAACIDCYKCVDVCPTGALTKGNHLQT------FGHFGLRDSGCVSCGACVDVCPTKAI 183 Query: 119 VEGPN 123 N Sbjct: 184 TVTDN 188 >gi|167629058|ref|YP_001679557.1| NADH dehydrogenase conserved domain protein, nuoe and nuof [Heliobacterium modesticaldum Ice1] gi|167591798|gb|ABZ83546.1| NADH dehydrogenase conserved domain protein, nuoe and nuof [Heliobacterium modesticaldum Ice1] Length = 906 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 38/97 (39%), Gaps = 13/97 (13%) Query: 23 CLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 LRYF + IN+ R + R +C C LC +CP +AI+ E Sbjct: 817 TLRYFRHEYEAHINHKRCPAGVCAALRPKGKFRIDEE---KCRRCGLCVRLCPVEAISGE 873 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 R + ID +CI CG C + CP I Sbjct: 874 VRKRP---------FVIDKNRCIACGACAQKCPAKCI 901 Score = 41.2 bits (95), Expect = 0.053, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 9/70 (12%) Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE-LYYDKERLLNNGDRWE 149 R ++ ID KC CGLC CPV+AI + E R+ DK R + G + Sbjct: 843 RPKGKFRIDEEKCRRCGLCVRLCPVEAI--------SGEVRKRPFVIDKNRCIACGACAQ 894 Query: 150 SEIVRNIVTD 159 + I + Sbjct: 895 KCPAKCIARE 904 >gi|259416523|ref|ZP_05740443.1| 4Fe-4S ferredoxin, iron-sulfur binding [Silicibacter sp. TrichCH4B] gi|259347962|gb|EEW59739.1| 4Fe-4S ferredoxin, iron-sulfur binding [Silicibacter sp. TrichCH4B] Length = 667 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 31/99 (31%), Gaps = 13/99 (13%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 L ++ C C C ++CP A+ + Sbjct: 502 PLPEGAPYGAVLV----DQDACTLCLSCVSLCPPGALGDNPD---------LPQLRFQED 548 Query: 102 KCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140 C+ CGLC CP DAI P A ++ ++E Sbjct: 549 ACLQCGLCANVCPEDAITYEPRLNLAASALDQMVLNEEE 587 Score = 37.8 bits (86), Expect = 0.52, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 18/55 (32%), Gaps = 11/55 (20%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C CP AIT ID + C CG C CP AI Sbjct: 294 TGCTRCLDACPTGAITPNGDSVA-----------IDPMICAGCGACASLCPSSAI 337 >gi|253573620|ref|ZP_04850963.1| pyruvate/ketoisovalerate oxidoreductase [Paenibacillus sp. oral taxon 786 str. D14] gi|251847148|gb|EES75153.1| pyruvate/ketoisovalerate oxidoreductase [Paenibacillus sp. oral taxon 786 str. D14] Length = 335 Score = 53.6 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 31/85 (36%), Gaps = 2/85 (2%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 EE CI C C+ +CP E P G + ID C C C AC Sbjct: 248 MMPHFKEESCIHCAQCDNVCPDNCFVWEERPDKK-GRPQMFLKGIDYQYCKGCLKCIHAC 306 Query: 114 PVDAIVEGPNFE-FATETRQELYYD 137 P DA+ E +A R +D Sbjct: 307 PTDALSGEREEEGYAEAHRVPHLFD 331 >gi|313898502|ref|ZP_07832039.1| 4Fe-4S binding domain protein [Clostridium sp. HGF2] gi|312956884|gb|EFR38515.1| 4Fe-4S binding domain protein [Clostridium sp. HGF2] Length = 257 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 37/105 (35%), Gaps = 12/105 (11%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 CI C C CP + + + +I +CI CG C CP Sbjct: 7 QINPSLCIGCGQCAKDCP-----------TSNIQLKDKKAEILEAECIMCGHCAAICPKK 55 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161 A+ E A E + D +++L R+ I + T+ P Sbjct: 56 AVTISGYSEAAVEQASSVRLDPQKVLEV-IRFRRTIRQFQETEIP 99 >gi|300856106|ref|YP_003781090.1| nitroreductase family protein fused to ferredoxin domain-containing protein [Clostridium ljungdahlii DSM 13528] gi|300436221|gb|ADK15988.1| nitroreductase family protein fused to ferredoxin domain protein [Clostridium ljungdahlii DSM 13528] Length = 272 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 37/107 (34%), Gaps = 16/107 (14%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 E+CI C C C A+ I I G I+ I CI CG C CP Sbjct: 1 MMNVNSEKCIGCGQCVKDCFARDIEIIDGKA-----------KINNITCIKCGHCIAVCP 49 Query: 115 VDAIVEGPNFEFAT---ETRQELYYDKERLLNNGDRWESEIVRNIVT 158 A+ + +++ D + LL N ++ I + Sbjct: 50 KSAVS-TDEYNMEDIKEYNKEDFSVDADTLL-NFIKFRRTIRQFKDK 94 >gi|226304299|ref|YP_002764257.1| ferredoxin--NADP(+) reductase [Rhodococcus erythropolis PR4] gi|226183414|dbj|BAH31518.1| putative ferredoxin--NADP(+) reductase [Rhodococcus erythropolis PR4] Length = 574 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 26/69 (37%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C C +CPA I RT ID C+ CG C +ACP Sbjct: 1 MPHVITQSCCNDAACVVVCPANCIHPTPDEPD---YARTEILYIDPRSCVDCGACIQACP 57 Query: 115 VDAIVEGPN 123 VDAIV Sbjct: 58 VDAIVPHDE 66 >gi|124027549|ref|YP_001012869.1| pyruvate synthase subunit porD [Hyperthermus butylicus DSM 5456] gi|123978243|gb|ABM80524.1| pyruvate synthase subunit porD [Hyperthermus butylicus DSM 5456] Length = 114 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Query: 59 GEERCIACKLCEAICPAQAITI-ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 +++C+ C+LC CP AI + G + + ++++ C CG+C CPV A Sbjct: 47 NQDKCVRCRLCWTYCPDGAIVELDKEYVTSTGRKYKITFEVNYDYCKGCGICANECPVKA 106 Query: 118 IVEGPN 123 I P Sbjct: 107 IEMVPE 112 >gi|304313915|ref|YP_003849062.1| tungsten formylmethanofuran dehydrogenase, subunit F [Methanothermobacter marburgensis str. Marburg] gi|1890207|emb|CAA61210.1| tungsten formylmethanofuran dehydrogenase [Methanothermobacter thermautotrophicus] gi|302587374|gb|ADL57749.1| tungsten formylmethanofuran dehydrogenase, subunit F [Methanothermobacter marburgensis str. Marburg] Length = 349 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 36/72 (50%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R + ++ CI C +CE +CP AI IE ++D KC++CG Sbjct: 139 RKDLITGEIEIDKDTCIYCGMCEEMCPVDAIEIEHQIPSSSSPTVATDINVDEDKCVHCG 198 Query: 108 LCQEACPVDAIV 119 +C+ CPVDAI+ Sbjct: 199 ICKRICPVDAIM 210 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 35/74 (47%), Gaps = 1/74 (1%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 L+ +E CI CK CE CP AIT + T +ID CIYCG+C Sbjct: 102 PKILKSAEIDDETCIQCKACETACPQDAIT-ITRELPERKDLITGEIEIDKDTCIYCGMC 160 Query: 110 QEACPVDAIVEGPN 123 +E CPVDAI Sbjct: 161 EEMCPVDAIEIEHQ 174 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 28/86 (32%), Positives = 37/86 (43%), Gaps = 11/86 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-----DIDMIKCIYCGLCQEAC 113 E++C+ C +C+ ICP AI + V ID C+ CG CQE C Sbjct: 190 DEDKCVHCGICKRICPVDAIMQVCRICPYGEYEIKVPEVTGTSYIDPELCVNCGWCQEIC 249 Query: 114 PVDAIVEGPNFEFATETRQELYYDKE 139 PVDA FE EL D++ Sbjct: 250 PVDAATVTKPFE------GELIIDQD 269 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 3/87 (3%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 + E + ++ C AC+ C CP ++ P+ Sbjct: 240 VNCGWCQEICPVDAATVTKPFEGELIIDQDTCQACETCVMACPCNVLSF---PKPEKSGE 296 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAI 118 + + D CIYCG C+ +CPV+AI Sbjct: 297 KPTKLYKDERFCIYCGACERSCPVNAI 323 Score = 42.8 bits (99), Expect = 0.018, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 31/86 (36%), Gaps = 4/86 (4%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R R+ + C C LC ICP AI + + + ID KC+ CG Sbjct: 16 RTGEENRKLIFQDCLCAVCGLCGEICPVSAIEVNPTGAMVRTEQDESKILIDENKCVLCG 75 Query: 108 LCQEACPVDA----IVEGPNFEFATE 129 +C CP A I E A Sbjct: 76 MCSSICPFQALDLQIDGTSIKELAEY 101 >gi|309781571|ref|ZP_07676306.1| iron-sulfur cluster-binding protein [Ralstonia sp. 5_7_47FAA] gi|308919676|gb|EFP65338.1| iron-sulfur cluster-binding protein [Ralstonia sp. 5_7_47FAA] Length = 708 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 9/79 (11%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ERC C C CP+QA+ ++ + C+ CGLC+ CP AI Sbjct: 576 NRERCTLCMACVGACPSQALRDQAE---------RPVLAMIERNCVQCGLCETTCPESAI 626 Query: 119 VEGPNFEFATETRQELYYD 137 P + E RQ + Sbjct: 627 ALVPRLNLSAEARQSATLN 645 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 7/55 (12%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C +C A AI + + C+ CG C ACP AI Sbjct: 323 VGCNACVDVCSASAIASQWKDGRGSVH-------VTPNLCVGCGACTTACPTGAI 370 Score = 37.8 bits (86), Expect = 0.45, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 18/48 (37%) Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 A + +G + R ID+ +C C C + CP AI Sbjct: 168 WPVHAGELAQVNGWLGAFEVQWRNRNPIDLDRCTRCNACIDVCPEGAI 215 Score = 35.1 bits (79), Expect = 2.9, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 25/91 (27%), Gaps = 19/91 (20%) Query: 28 FKAKTTINYPFEKGSTSPRFRGEHALRRYP-----NGEERCIACKLCEAICPAQAITIES 82 F +P G + A +RC C C +CP AI Sbjct: 160 FVPPMERRWPVHAGELAQVNGWLGAFEVQWRNRNPIDLDRCTRCNACIDVCPEGAID--- 216 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 Y ID+ C C +AC Sbjct: 217 -----------ALYQIDLDACRDHRACVKAC 236 >gi|209695337|ref|YP_002263266.1| electron transport complex protein RnfC [Aliivibrio salmonicida LFI1238] gi|208009289|emb|CAQ79555.1| electron transport complex protein RnfC [Aliivibrio salmonicida LFI1238] Length = 716 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 29/134 (21%), Positives = 41/134 (30%), Gaps = 10/134 (7%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 P K + L Y + CI C C CP A+ + Sbjct: 351 HQQIPITKITNCIITPDRKELPLYNHEMA-CIRCSSCADACPV-ALLPQQLYWYSKSEDY 408 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGD---RWE 149 + + CI CG C CP I + A + E+Y K+ L R+E Sbjct: 409 EKCEEYHLSDCIECGACAYVCP-SEIPLVQYYRQA---KSEIYARKQDSLAADRAKVRFE 464 Query: 150 SEIVRNIVTDSPYR 163 E + D R Sbjct: 465 -EKNARMERDKLER 477 >gi|38569321|gb|AAR24341.1| reductive dehalogenase homologous protein RdhA9 [Dehalococcoides sp. FL2] Length = 474 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 3/71 (4%) Query: 59 GEERCIACKLCEAICPAQAI---TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 G E C C +C CP AI + + D KC +C +CQ CP Sbjct: 358 GREFCKTCGICAEACPMDAIQKGEPSWEVNHKWDNPGYLHWRNDRSKCGHCPVCQPVCPF 417 Query: 116 DAIVEGPNFEF 126 +A+ + E Sbjct: 418 NAMDKSFIHEL 428 >gi|325278925|ref|YP_004251467.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Odoribacter splanchnicus DSM 20712] gi|324310734|gb|ADY31287.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Odoribacter splanchnicus DSM 20712] Length = 1178 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 39/108 (36%), Gaps = 20/108 (18%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQA-----ITIESGPRCHDGTR-----------RTV 94 A+ E CI C C +CP A ++ E GT+ Sbjct: 682 IAVNVPEWQVENCIQCNQCAYVCPHAAIRPFLMSDEELAAAPAGTQAKPAIGKELAGYKF 741 Query: 95 RYDIDMIKCIYCGLCQEACP--VDAIVEGP-NFEFATETRQELYYDKE 139 R + + C CG C + CP A+V P + E R E Y DK+ Sbjct: 742 RIQVSPLDCTGCGNCADVCPAKTKALVMRPLESQMVEENRWE-YMDKK 788 >gi|229549315|ref|ZP_04438040.1| pyruvate synthase [Enterococcus faecalis ATCC 29200] gi|229305552|gb|EEN71548.1| pyruvate synthase [Enterococcus faecalis ATCC 29200] Length = 749 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 17/96 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------TVRY 96 AL ++C C C +CP AI E G R Sbjct: 251 IALEVPEWQMDKCTMCNECAFVCPHAAIRPFLADEEELKEAPAGFAMREMRGTDGLMYRI 310 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130 + + C CGLC +ACPV AI+ P +E E Sbjct: 311 QVSLEDCTGCGLCVQACPVKDKAILMKP-YETQKEQ 345 >gi|77176881|gb|ABA64545.1| reductive dehalogenase protein [Dehalococcoides sp. KB1] Length = 474 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 3/71 (4%) Query: 59 GEERCIACKLCEAICPAQAI---TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 G E C C +C CP AI + + D KC +C +CQ CP Sbjct: 358 GREFCKTCGICAEACPMDAIQKGEPSWEVNHKWDNPGYLHWRNDRSKCGHCPVCQPVCPF 417 Query: 116 DAIVEGPNFEF 126 +A+ + E Sbjct: 418 NAMDKSFIHEL 428 >gi|325675367|ref|ZP_08155051.1| ferredoxin-NADP reductase [Rhodococcus equi ATCC 33707] gi|325553338|gb|EGD23016.1| ferredoxin-NADP reductase [Rhodococcus equi ATCC 33707] Length = 564 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 3/59 (5%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C C + CP I T I+ CI CG C +ACPV+AI Sbjct: 7 QTCCNDASCVSACPVNCIHPTPEEAE---FATTEMLYIEPQACIDCGACVDACPVNAIF 62 >gi|300728139|ref|ZP_07061510.1| nitroreductase family protein [Prevotella bryantii B14] gi|299774565|gb|EFI71186.1| nitroreductase family protein [Prevotella bryantii B14] Length = 269 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 20/67 (29%), Gaps = 8/67 (11%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + CI C C +CP + +CI CG C + CP Sbjct: 5 NINTDTCIMCGKCTQVCPPHIFMQREKKTPIRVFK--------PERCIDCGHCVDVCPTH 56 Query: 117 AIVEGPN 123 +I Sbjct: 57 SIEHSNI 63 >gi|239909239|ref|YP_002955981.1| nucleotide-disulphide oxidoreductase family protein [Desulfovibrio magneticus RS-1] gi|239799106|dbj|BAH78095.1| nucleotide-disulphide oxidoreductase family protein [Desulfovibrio magneticus RS-1] Length = 777 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 23/66 (34%), Gaps = 6/66 (9%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C LCE +CP AI+ + KCI CG C ACP Sbjct: 718 CRDCGLCETLCPVGAISRQQKEGKEFAMVSD------PEKCIGCGFCANACPCGVWSWVE 771 Query: 123 NFEFAT 128 N T Sbjct: 772 NTPLTT 777 >gi|126180364|ref|YP_001048329.1| cobyrinic acid a,c-diamide synthase [Methanoculleus marisnigri JR1] gi|125863158|gb|ABN58347.1| Cobyrinic acid a,c-diamide synthase [Methanoculleus marisnigri JR1] Length = 289 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 35/99 (35%), Gaps = 18/99 (18%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 + T+ FRG L ERC C +C C AI RR +++D Sbjct: 49 RRLTTEEFRG---LAAARIDPERCRDCGICADHCRFGAIV-----------RRDDAWEVD 94 Query: 100 MIKCIYCGLCQEACPVDAIVEGP----NFEFATETRQEL 134 + C C +C CP AI P + R L Sbjct: 95 TMHCEGCAVCTYVCPTGAISMEPRVCGEIYTSATDRGNL 133 >gi|126437410|ref|YP_001073101.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Mycobacterium sp. JLS] gi|126237210|gb|ABO00611.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Mycobacterium sp. JLS] Length = 561 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 21/64 (32%), Gaps = 3/64 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C + C CP I G ID C+ CG C ACP Sbjct: 1 MPHVITQSCCSDGSCVFACPVNCIHPTPDE---PGFATAEMLYIDPAACVDCGACVSACP 57 Query: 115 VDAI 118 V AI Sbjct: 58 VGAI 61 Score = 35.5 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 1/44 (2%) Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 + C G C ACPV+ I P+ E T + LY D Sbjct: 1 MPHVITQSCCSDGSCVFACPVNCIHPTPD-EPGFATAEMLYIDP 43 >gi|108801425|ref|YP_641622.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Mycobacterium sp. MCS] gi|119870578|ref|YP_940530.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Mycobacterium sp. KMS] gi|108771844|gb|ABG10566.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Mycobacterium sp. MCS] gi|119696667|gb|ABL93740.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Mycobacterium sp. KMS] Length = 561 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 21/64 (32%), Gaps = 3/64 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C + C CP I G ID C+ CG C ACP Sbjct: 1 MPHVITQSCCSDGSCVFACPVNCIHPTPDE---PGFATAEMLYIDPAACVDCGACVSACP 57 Query: 115 VDAI 118 V AI Sbjct: 58 VGAI 61 Score = 35.5 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 1/44 (2%) Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 + C G C ACPV+ I P+ E T + LY D Sbjct: 1 MPHVITQSCCSDGSCVFACPVNCIHPTPD-EPGFATAEMLYIDP 43 >gi|134100924|ref|YP_001106585.1| ferredoxin--NADP+ reductase [Saccharopolyspora erythraea NRRL 2338] gi|291003463|ref|ZP_06561436.1| ferredoxin--NADP+ reductase [Saccharopolyspora erythraea NRRL 2338] gi|133913547|emb|CAM03660.1| ferredoxin--NADP+ reductase [Saccharopolyspora erythraea NRRL 2338] Length = 508 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 3/63 (4%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C C +CP I GT + ID CI CG C +ACPV+AI Sbjct: 7 QTCCNDASCVKVCPVNCIHPTPDE-PDFGTAEMLH--IDPATCIDCGACADACPVEAIFP 63 Query: 121 GPN 123 Sbjct: 64 VEE 66 >gi|320333930|ref|YP_004170641.1| formate dehydrogenase subunit alpha [Deinococcus maricopensis DSM 21211] gi|319755219|gb|ADV66976.1| formate dehydrogenase, alpha subunit [Deinococcus maricopensis DSM 21211] Length = 1008 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 3/84 (3%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---Y 96 + + + Y ++CI C C C + R + Sbjct: 123 RPFQPKPYAVDDTNPFYRYDPDQCILCGRCVEACQNLQVNETLSINWESAHPRVLWDGGR 182 Query: 97 DIDMIKCIYCGLCQEACPVDAIVE 120 DI C+ CG C CP +A+ E Sbjct: 183 DIGESSCVSCGHCVTVCPCNALQE 206 Score = 40.5 bits (93), Expect = 0.083, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 25/75 (33%), Gaps = 9/75 (12%) Query: 48 RGEHALRRYPNGEERCIAC----KLCEA-----ICPAQAITIESGPRCHDGTRRTVRYDI 98 R + R + E C C C + Q T P+ + Y Sbjct: 82 REDAFDRLLAHHELYCTVCDNNNGNCTVHNTTALMRVQHQTRPFQPKPYAVDDTNPFYRY 141 Query: 99 DMIKCIYCGLCQEAC 113 D +CI CG C EAC Sbjct: 142 DPDQCILCGRCVEAC 156 >gi|307130991|ref|YP_003883007.1| inner membrane iron-sulfur protein in SoxR-reducing complex [Dickeya dadantii 3937] gi|306528520|gb|ADM98450.1| inner membrane iron-sulfur protein in SoxR-reducing complex [Dickeya dadantii 3937] Length = 739 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 36/110 (32%), Gaps = 3/110 (2%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + E+ CI C C CPA + + G + CI CG C C Sbjct: 369 IQAQEEEQACIRCGKCADACPAG-LLPQQLYWFSRGQEHEKARQHHLFDCIECGACAYVC 427 Query: 114 PVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 P I + Q L + + + R+++ R + + R Sbjct: 428 P-SNIPLVQYYRQKKAEIQALDLESRKAVEAKARFDARQAR-LEREKQAR 475 >gi|257466098|ref|ZP_05630409.1| hydrogenase, Fe-only [Fusobacterium gonidiaformans ATCC 25563] gi|315917255|ref|ZP_07913495.1| hydrogenase [Fusobacterium gonidiaformans ATCC 25563] gi|313691130|gb|EFS27965.1| hydrogenase [Fusobacterium gonidiaformans ATCC 25563] Length = 652 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 32/85 (37%), Gaps = 10/85 (11%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 E G+ E+CI C C +CP Q IT R Sbjct: 200 EEHVEDLKCPAGQCIHLLKFKITEKCIGCTACARVCPVQCITGAPKKRHF---------- 249 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 +D +C +CG C ACPV AI EG Sbjct: 250 LDTSRCTHCGQCVSACPVGAIFEGD 274 >gi|257452106|ref|ZP_05617405.1| hydrogenase, Fe-only [Fusobacterium sp. 3_1_5R] gi|317058652|ref|ZP_07923137.1| hydrogenase [Fusobacterium sp. 3_1_5R] gi|313684328|gb|EFS21163.1| hydrogenase [Fusobacterium sp. 3_1_5R] Length = 652 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 32/85 (37%), Gaps = 10/85 (11%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 E G+ E+CI C C +CP Q IT R Sbjct: 200 EEHVEDLKCPAGQCIHLLKFKITEKCIGCTACARVCPVQCITGAPKKRHF---------- 249 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 +D +C +CG C ACPV AI EG Sbjct: 250 LDTSRCTHCGQCVSACPVGAIFEGD 274 >gi|297563041|ref|YP_003682015.1| molybdopterin oxidoreductase Fe4S4 region [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296847489|gb|ADH69509.1| molybdopterin oxidoreductase Fe4S4 region [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 313 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 4/75 (5%) Query: 56 YPNGEERCIACKLCEAIC--PAQAITIESGPRCHDGTRRTVRYDIDM--IKCIYCGLCQE 111 Y +CI C C C Q R + +D+ + C+YCG C E Sbjct: 170 YVRDYSKCIMCYKCVDACGDQWQNTFAIGVAGRGFDARVSTEHDVTLPDSACVYCGNCIE 229 Query: 112 ACPVDAIVEGPNFEF 126 CP A+ F+ Sbjct: 230 VCPTGALSFRTEFDM 244 >gi|325479615|gb|EGC82707.1| 4Fe-4S binding domain protein [Anaerococcus prevotii ACS-065-V-Col13] Length = 509 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 6/66 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV------RYDIDMIKCIYCGLCQEA 112 +++CI C C + CP AI + P + + R DI+ KC+ CG C Sbjct: 146 DQDKCIKCGKCVSACPYNAINHQKRPCAESCGVKAISSDELGRADINEDKCVACGRCIIT 205 Query: 113 CPVDAI 118 CP AI Sbjct: 206 CPFGAI 211 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 5/65 (7%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-----IDMIKCIYCGLCQEACPVDA 117 C AC + Q P + + V Y ID KCI CG C ACP +A Sbjct: 105 CEACPENKVTVTDQCHACIGHPCVNVCPKNAVTYTAKGAIIDQDKCIKCGKCVSACPYNA 164 Query: 118 IVEGP 122 I Sbjct: 165 INHQK 169 >gi|260899671|ref|ZP_05908066.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus AQ4037] gi|308109467|gb|EFO47007.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus AQ4037] Length = 553 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 35/102 (34%), Gaps = 9/102 (8%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + C C C A+CP A+ + ++ CI CGLC++ACP Sbjct: 415 CESKDCTLCMSCVAVCPTHALHTDG---------QSPSLKFVEQDCIQCGLCEKACPEKV 465 Query: 118 IVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 + P + E RQ+ E R + D Sbjct: 466 LTLTPRMNWVKEERQKAVVIHEEKAAECIRCHKPFAPQSMID 507 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 6/54 (11%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 C+ C CPA A++ E + R +I+ C G C ACP +AI Sbjct: 186 CERCVDACPAGALSSEGSDKTGH------RIEINPYLCQGVGTCATACPTEAIH 233 >gi|281356040|ref|ZP_06242533.1| Ferredoxin hydrogenase [Victivallis vadensis ATCC BAA-548] gi|281317409|gb|EFB01430.1| Ferredoxin hydrogenase [Victivallis vadensis ATCC BAA-548] Length = 463 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 6/68 (8%) Query: 59 GEERCIACKLCEAICPAQA------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 +CI C C +CP A ++ P G R ID CIYCG C A Sbjct: 142 DRTKCINCGKCMTVCPYHAIIRNPLPCEDACPVGAIGKGEDGRVRIDFKNCIYCGKCFRA 201 Query: 113 CPVDAIVE 120 CP AI+E Sbjct: 202 CPFSAIME 209 Score = 40.1 bits (92), Expect = 0.12, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 22/65 (33%), Gaps = 5/65 (7%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCIYCGLCQEACPVDA 117 C C + + P ++ R ID KCI CG C CP A Sbjct: 101 CHGCVDSHVQVSNSCVGCFARPCVGVCPKQAIQVINQRSTIDRTKCINCGKCMTVCPYHA 160 Query: 118 IVEGP 122 I+ P Sbjct: 161 IIRNP 165 >gi|114567215|ref|YP_754369.1| 2Fe-2S iron-sulfur cluster binding domain-containing protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338150|gb|ABI68998.1| 2Fe-2S iron-sulfur cluster domain with dehydrogenase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 247 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 29/105 (27%), Positives = 35/105 (33%), Gaps = 6/105 (5%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 EERCI C+LC C + S R YD CI C C CP AI Sbjct: 119 EEERCIVCRLCVLACEKMGTSAISTVMRGIDKRVGTPYDQAATACIGCAACAHICPTGAI 178 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + TR ++K L N +R D R Sbjct: 179 EVLD----SGNTRT--IWNKNFNLINCERCGQPFATREQIDHVSR 217 >gi|317497055|ref|ZP_07955382.1| 4Fe-4S binding domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316895600|gb|EFV17755.1| 4Fe-4S binding domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 481 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 28/74 (37%), Gaps = 6/74 (8%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCI 104 R ++C C +C CP AI S P + YD ID KCI Sbjct: 118 PGHTRSRIDPQKCKECGMCAKACPYNAIAHVSRPCKDSCPVDAISYDEYGVSVIDEEKCI 177 Query: 105 YCGLCQEACPVDAI 118 CG C CP AI Sbjct: 178 RCGQCAAKCPFGAI 191 Score = 38.2 bits (87), Expect = 0.42, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 21/63 (33%), Gaps = 5/63 (7%) Query: 63 CIACKLCEAICPAQAI-----TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 C C + + R R ID KC CG+C +ACP +A Sbjct: 85 CADCPISSYVVTNNCQNCLGKDCIKACRFGAIEPGHTRSRIDPQKCKECGMCAKACPYNA 144 Query: 118 IVE 120 I Sbjct: 145 IAH 147 >gi|307594818|ref|YP_003901135.1| methyl-viologen-reducing hydrogenase subunit delta [Vulcanisaeta distributa DSM 14429] gi|307550019|gb|ADN50084.1| methyl-viologen-reducing hydrogenase delta subunit [Vulcanisaeta distributa DSM 14429] Length = 1226 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 30/83 (36%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 R + L R E CI +LC CP + + G + C+ Sbjct: 7 DVNRVKRPLGRLKITPEMCIGDELCVKRCPMGILELTREEVNPRGYHYVRIKPGKEVDCV 66 Query: 105 YCGLCQEACPVDAIVEGPNFEFA 127 CG+C++ CP +AI E Sbjct: 67 ACGICEKVCPTNAIYVEHEEEIT 89 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 22/62 (35%), Gaps = 10/62 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +C+ C LC CP AI E G I+ C CG C CP A+ Sbjct: 1014 DPGKCVGCLLCVKACPYGAIKGEPGKPV----------TINPAACQGCGSCVGECPYGAL 1063 Query: 119 VE 120 Sbjct: 1064 DM 1065 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 12/36 (33%), Positives = 16/36 (44%) Query: 87 HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + +D KC+ C LC +ACP AI P Sbjct: 1002 DYIIKEVSVPRVDPGKCVGCLLCVKACPYGAIKGEP 1037 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 23/92 (25%), Gaps = 15/92 (16%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE-------SGPRCHDGTRRTVRY 96 +R L + C C LCE +CP + Y Sbjct: 193 PGHYR-AKILVKPRYVTNECTKCGLCEGVCPVVVPSEYNAGIGLRKAIYLPFPQAEPGIY 251 Query: 97 DIDMIKC-------IYCGLCQEACPVDAIVEG 121 ID C I C C C I+ Sbjct: 252 AIDPDLCLNKPPENIACNRCVSVCEPRTILFT 283 Score = 35.1 bits (79), Expect = 3.3, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 15/34 (44%) Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 G H + V+ +C CGLC+ CPV Sbjct: 190 KGEPGHYRAKILVKPRYVTNECTKCGLCEGVCPV 223 >gi|296395410|ref|YP_003660294.1| monooxygenase FAD-binding protein [Segniliparus rotundus DSM 44985] gi|296182557|gb|ADG99463.1| monooxygenase FAD-binding protein [Segniliparus rotundus DSM 44985] Length = 556 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 22/64 (34%), Gaps = 3/64 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C + C CP I G ID C+ CG C ACP Sbjct: 1 MPHVITQSCCSDGSCVFACPVNCIHPTPDE---PGFLTAETLHIDPAACVDCGACVHACP 57 Query: 115 VDAI 118 VDAI Sbjct: 58 VDAI 61 Score = 35.1 bits (79), Expect = 3.2, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 1/44 (2%) Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 + C G C ACPV+ I P+ E T + L+ D Sbjct: 1 MPHVITQSCCSDGSCVFACPVNCIHPTPD-EPGFLTAETLHIDP 43 >gi|330828774|ref|YP_004391726.1| iron-sulfur cluster-binding protein [Aeromonas veronii B565] gi|328803910|gb|AEB49109.1| Iron-sulfur cluster-binding protein [Aeromonas veronii B565] Length = 588 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 9/71 (12%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C A+CP++A+ + CI CG+C++ACP AIV Sbjct: 454 SDCTLCMGCVAVCPSRALHAVGHAPG---------LNFIEQDCIQCGMCEKACPEQAIVL 504 Query: 121 GPNFEFATETR 131 P + E R Sbjct: 505 TPRLQPVPEAR 515 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 11/53 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C +CP A+ +G R ID C G C ACP AI Sbjct: 230 CSRCLDVCPTDALKPING-----------RIQIDPHLCQGFGSCASACPTGAI 271 Score = 34.3 bits (77), Expect = 5.6, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 12/45 (26%) Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 QA P ++ C C C CP A+ Sbjct: 428 WQANEGNREPLAVPHGAPYGSVELKESDCTLCMGCVAVCPSRALH 472 Score = 33.5 bits (75), Expect = 9.7, Method: Composition-based stats. Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR--YDIDMIKCIYC 106 + CI C +CE CP QAI + + RR V+ + CI C Sbjct: 485 QDCIQCGMCEKACPEQAIVLTPRLQPVPEARRAVQSLKAEEAACCIRC 532 >gi|83312474|ref|YP_422738.1| putative glutamate synthase (NADPH) small subunit [Magnetospirillum magneticum AMB-1] gi|82947315|dbj|BAE52179.1| NADPH-dependent glutamate synthase beta chain and related oxidoreductase [Magnetospirillum magneticum AMB-1] Length = 651 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 4/59 (6%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C C CP A++ G Y KCI C +C++ CP I G Sbjct: 594 CFECDNCVVFCPQTAVSRVKKSERTTGRYVETDY----AKCIGCHICKDVCPTGYIQMG 648 >gi|254787398|ref|YP_003074827.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Teredinibacter turnerae T7901] gi|237686318|gb|ACR13582.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Teredinibacter turnerae T7901] Length = 1195 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 36/121 (29%), Gaps = 24/121 (19%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPR 85 T+ + A+ E CI C C +CP A Sbjct: 675 PTGTTQWEKRNIAMDIPIWDSELCIQCGNCSIVCPHATIRAKFYRESALVNAPDSFRSAD 734 Query: 86 CHDGTRRTVRY--DIDMIKCIYCGLCQEACPV--------DAIVEGPNFEFATETRQELY 135 +RY + C CGLC ACPV AI P E+ ++ L Sbjct: 735 VTARGFPDLRYTLQVYPEDCTGCGLCVRACPVNDPQDESRHAINMQPKQEWFESEKENLS 794 Query: 136 Y 136 + Sbjct: 795 F 795 >gi|182417722|ref|ZP_02949040.1| uptake hydrogenase [Clostridium butyricum 5521] gi|237668967|ref|ZP_04528951.1| NADH dehydrogenase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378446|gb|EDT75977.1| uptake hydrogenase [Clostridium butyricum 5521] gi|237657315|gb|EEP54871.1| putative iron hydrogenase, electron-transfer subunit [Clostridium butyricum E4 str. BoNT E BL5262] Length = 656 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 40/96 (41%), Gaps = 15/96 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 L+Y FK + T + +K AL Y +++C C C CP QAI E Sbjct: 573 TLKY-FKEEYTAHVVDKKCPGGVC----KALISYEINKDKCRGCSKCSRNCPVQAIQGEI 627 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ID KCI CG C CP +A+ Sbjct: 628 KK----------TFEIDKEKCIKCGQCIIECPFNAV 653 >gi|148270498|ref|YP_001244958.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1] gi|147736042|gb|ABQ47382.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1] Length = 626 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 30/69 (43%), Gaps = 10/69 (14%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 A ++Y + C C LC CP AIT E G Y I+ KC+ CGLC Sbjct: 567 AFKKYVINPDICKGCGLCARSCPQNAITGERGKP----------YTINQEKCVKCGLCAS 616 Query: 112 ACPVDAIVE 120 CP AI Sbjct: 617 KCPFKAIEL 625 Score = 41.6 bits (96), Expect = 0.039, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 16/39 (41%) Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 G +Y I+ C CGLC +CP +AI Sbjct: 555 HIEGECPSGMCTAFKKYVINPDICKGCGLCARSCPQNAI 593 >gi|291545110|emb|CBL18219.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [Ruminococcus sp. 18P13] Length = 1180 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 36/100 (36%), Gaps = 16/100 (16%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA---------------QAITIES 82 FE+G+++ RG + N E C C C +CP + Sbjct: 671 FEQGASAYEKRGVAVMVPTWN-AETCAKCNKCAFVCPHATIRPFAMNAEEAAAAPANTKK 729 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 P+ T T I + C+ CG+C CP ++ P Sbjct: 730 APKPIVKTDYTYTLAISPMDCMGCGVCIGVCPTKSLTMVP 769 >gi|118616138|ref|YP_904470.1| NADPH:adrenodoxin oxidoreductase FprB [Mycobacterium ulcerans Agy99] gi|118568248|gb|ABL02999.1| NADPH:adrenodoxin oxidoreductase FprB [Mycobacterium ulcerans Agy99] Length = 561 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 3/64 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C C CP I G + ID + C+ CG C ACP Sbjct: 1 MPHVITQSCCNDGSCVFACPVNCIHPTPDE---PGFATSEMLYIDPVTCVDCGACVSACP 57 Query: 115 VDAI 118 V AI Sbjct: 58 VGAI 61 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 1/44 (2%) Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 + C G C ACPV+ I P+ E T + LY D Sbjct: 1 MPHVITQSCCNDGSCVFACPVNCIHPTPD-EPGFATSEMLYIDP 43 >gi|325284680|ref|YP_004264143.1| formate dehydrogenase, alpha subunit [Deinococcus proteolyticus MRP] gi|324316169|gb|ADY27283.1| formate dehydrogenase, alpha subunit [Deinococcus proteolyticus MRP] Length = 1060 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 3/84 (3%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---Y 96 + + + + Y ++CI C C C + R + Sbjct: 185 RPYHPKGYEKDFSNPFYRYDPDQCILCGRCVEACQNVQVNETLSINWEAEQPRVLWDGGK 244 Query: 97 DIDMIKCIYCGLCQEACPVDAIVE 120 I C+ CG C CP +A++E Sbjct: 245 PIGESSCVSCGHCITVCPCNALME 268 Score = 40.5 bits (93), Expect = 0.079, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 21/69 (30%), Gaps = 9/69 (13%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRRTV-----RYDIDMIKCI 104 R N C C C + +E R + Y D +CI Sbjct: 150 RLIANHVLYCTVCDNNNGNCAVHNTLSTLRLEHQHRPYHPKGYEKDFSNPFYRYDPDQCI 209 Query: 105 YCGLCQEAC 113 CG C EAC Sbjct: 210 LCGRCVEAC 218 >gi|323704270|ref|ZP_08115849.1| NADH dehydrogenase (quinone) [Thermoanaerobacterium xylanolyticum LX-11] gi|323536336|gb|EGB26108.1| NADH dehydrogenase (quinone) [Thermoanaerobacterium xylanolyticum LX-11] Length = 596 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 15/97 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 ++Y F+ + + ++ AL ++ ++C C +C CP AI+ Sbjct: 513 TIKY-FRDEYEAHIKEKRCPAGVC----QALLKFRIDPDKCKGCGICAKNCPTNAISG-- 565 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + + ID KCI CG C + CP DAI Sbjct: 566 --------KVKQPHVIDQDKCIKCGTCMDKCPFDAIY 594 >gi|123505468|ref|XP_001328981.1| Iron only hydrogenase large subunit, C-terminal domain containing protein [Trichomonas vaginalis G3] gi|121911931|gb|EAY16758.1| Iron only hydrogenase large subunit, C-terminal domain containing protein [Trichomonas vaginalis G3] Length = 541 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 24/98 (24%), Gaps = 11/98 (11%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-QAITIESGP 84 K L CI C C C QA+ Sbjct: 94 MMPKTPEIEELYTYLKPARKVNMTPQKLTSISFDPGLCIQCDRCTRACSDIQAMDAIQED 153 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + I CI CG C CP +AI E P Sbjct: 154 ----------THQIIDFDCIQCGQCANVCPTNAIYETP 181 >gi|269963060|ref|ZP_06177396.1| iron-sulfur cluster-binding protein [Vibrio harveyi 1DA3] gi|269832192|gb|EEZ86315.1| iron-sulfur cluster-binding protein [Vibrio harveyi 1DA3] Length = 553 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 35/102 (34%), Gaps = 9/102 (8%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + C C C A+CP +A+ + + CI CGLC++ACP Sbjct: 415 CESKDCTLCMSCVAVCPTRALHTDGE---------SPSLKFVEQDCIQCGLCEKACPEKV 465 Query: 118 IVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 + P + E RQ+ E R + D Sbjct: 466 LTLTPRMNWVKEERQKAVVIHEEKAAECIRCHKPFAPQSMID 507 Score = 39.3 bits (90), Expect = 0.16, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 6/54 (11%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 C+ C CPA A++ E + R +I+ C G C ACP +AI Sbjct: 186 CERCVDACPAGALSSEGSDKTGH------RIEINPYLCQGVGTCATACPTEAIH 233 >gi|153832369|ref|ZP_01985036.1| iron-sulfur cluster-binding protein [Vibrio harveyi HY01] gi|156974556|ref|YP_001445463.1| ferredoxin [Vibrio harveyi ATCC BAA-1116] gi|148871398|gb|EDL70261.1| iron-sulfur cluster-binding protein [Vibrio harveyi HY01] gi|156526150|gb|ABU71236.1| hypothetical protein VIBHAR_02274 [Vibrio harveyi ATCC BAA-1116] Length = 553 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 35/102 (34%), Gaps = 9/102 (8%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + C C C A+CP +A+ + + CI CGLC++ACP Sbjct: 415 CESKDCTLCMSCVAVCPTRALHTDGE---------SPSLKFVEQDCIQCGLCEKACPEKV 465 Query: 118 IVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 + P + E RQ+ E R + D Sbjct: 466 LTLTPRMNWVKEERQKAVVIHEEKAAECIRCHKPFAPQSMID 507 Score = 39.3 bits (90), Expect = 0.16, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 6/54 (11%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 C+ C CPA A++ E + R +I+ C G C ACP +AI Sbjct: 186 CERCVDACPAGALSSEGSDKTGH------RIEINPYLCQGVGTCATACPTEAIH 233 >gi|91223727|ref|ZP_01258991.1| iron-sulfur cluster-binding protein [Vibrio alginolyticus 12G01] gi|91191219|gb|EAS77484.1| iron-sulfur cluster-binding protein [Vibrio alginolyticus 12G01] Length = 553 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 36/102 (35%), Gaps = 9/102 (8%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + C C C A+CP +A+ + R+ CI CGLC++ACP Sbjct: 415 CESKGCTLCMSCVAVCPTRALHTDG---------RSPSLKFVEQDCIQCGLCEKACPEKV 465 Query: 118 IVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 + P + E RQ+ E R + D Sbjct: 466 LTLTPRMNWVKEERQKAVVIHEEKAAECIRCHKPFAPQSMID 507 Score = 40.1 bits (92), Expect = 0.10, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 6/54 (11%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 C+ C CPA A++ E R R +I+ C G C ACP +AI Sbjct: 186 CERCVDACPAGALSSEGSDRTGH------RIEINPYLCQGVGTCATACPTEAIH 233 >gi|330506526|ref|YP_004382954.1| formylmethanofuran dehydrogenase subunit F [Methanosaeta concilii GP-6] gi|328927334|gb|AEB67136.1| formylmethanofuran dehydrogenase, subunit F [Methanosaeta concilii GP-6] Length = 343 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 26/86 (30%), Positives = 40/86 (46%), Gaps = 2/86 (2%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT-RRTVRYDIDMIKCIYCGLC 109 A++ E+C+ C LC +CP I +E DG+ + R ID+ +C++CG C Sbjct: 94 VAIKSTVVDSEKCVHCGLCCDVCPQACIELEDRHLAEDGSLKVGGRTIIDLERCVHCGWC 153 Query: 110 QEACPVDAIVEGPNFEFATETRQELY 135 CP AI F T +R + Sbjct: 154 ASVCPTGAISFEKPFA-GTFSRDDNV 178 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 4/67 (5%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 + + C ACK C CPA A+ G + + R CIYCG C +ACPV Sbjct: 172 FSRDDNVCQACKTCVHTCPANALFNREWKAGERGEKVSHR----PDACIYCGACAQACPV 227 Query: 116 DAIVEGP 122 AIV Sbjct: 228 RAIVVSK 234 Score = 38.9 bits (89), Expect = 0.24, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 1/65 (1%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDG-TRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +RCI C C +CP + I S G + C +C LC CP A+ Sbjct: 18 PDRCIGCGTCVQVCPKGELIIGSVGAVVRGLIDKDFIEKRMSGACAFCALCSRVCPTGAL 77 Query: 119 VEGPN 123 N Sbjct: 78 EFRKN 82 Score = 37.0 bits (84), Expect = 0.90, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 16/77 (20%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRR----------------TVRYDIDMI 101 + + CI C C CP +AI + + + T + D I Sbjct: 210 HRPDACIYCGACAQACPVRAIVVSKTAIIPEMKGKGAFEKKLALPLPRPTLTSCLETDEI 269 Query: 102 KCIYCGLCQEACPVDAI 118 C+ CG C ACPV+A+ Sbjct: 270 ACLGCGNCVIACPVNAL 286 Score = 35.5 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 8/61 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ERC+ C C ++CP AI+ E + D C C C CP +A+ Sbjct: 143 DLERCVHCGWCASVCPTGAISFEK--------PFAGTFSRDDNVCQACKTCVHTCPANAL 194 Query: 119 V 119 Sbjct: 195 F 195 Score = 33.5 bits (75), Expect = 8.7, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 24/77 (31%), Gaps = 9/77 (11%) Query: 55 RYPNGEERCIACKLCEAICPAQAIT---------IESGPRCHDGTRRTVRYDIDMIKCIY 105 E C+ C C CP A++ E + R +D C Sbjct: 263 CLETDEIACLGCGNCVIACPVNALSDPYLAAGHLNELEIKPLLEVRDGTVKVVDQEVCGS 322 Query: 106 CGLCQEACPVDAIVEGP 122 C C CP DAI P Sbjct: 323 CATCSMICPADAIRLVP 339 >gi|297617763|ref|YP_003702922.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Syntrophothermus lipocalidus DSM 12680] gi|297145600|gb|ADI02357.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Syntrophothermus lipocalidus DSM 12680] Length = 354 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 25/79 (31%), Positives = 35/79 (44%), Gaps = 14/79 (17%) Query: 59 GEERCIACKLC-EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 CI C +C E CP +AI + ++ +CI CGLC CP +A Sbjct: 273 DAPECIGCGICAEERCPVKAIEMIEDIAV-----------LNNDRCIGCGLCVSKCPTNA 321 Query: 118 IVE--GPNFEFATETRQEL 134 I ++EF ET +EL Sbjct: 322 ISLVKRDDYEFPPETVREL 340 Score = 37.0 bits (84), Expect = 0.83, Method: Composition-based stats. Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 1/36 (2%) Query: 97 DIDMIKCIYCGLCQEA-CPVDAIVEGPNFEFATETR 131 ID +CI CG+C E CPV AI + R Sbjct: 271 RIDAPECIGCGICAEERCPVKAIEMIEDIAVLNNDR 306 >gi|296169651|ref|ZP_06851269.1| ferredoxin--NADP(+) reductase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295895648|gb|EFG75344.1| ferredoxin--NADP(+) reductase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 563 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 3/64 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C C CP I G + ID + C+ CG C ACP Sbjct: 1 MPHVITQSCCNDGSCVFACPVNCIHPTPDE---PGFATSEMLYIDPVACVDCGACVSACP 57 Query: 115 VDAI 118 V AI Sbjct: 58 VGAI 61 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 1/44 (2%) Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 + C G C ACPV+ I P+ E T + LY D Sbjct: 1 MPHVITQSCCNDGSCVFACPVNCIHPTPD-EPGFATSEMLYIDP 43 >gi|183984613|ref|YP_001852904.1| NADPH:adrenodoxin oxidoreductase FprB [Mycobacterium marinum M] gi|183177939|gb|ACC43049.1| NADPH:adrenodoxin oxidoreductase FprB [Mycobacterium marinum M] Length = 561 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 3/64 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C C CP I G + ID + C+ CG C ACP Sbjct: 1 MPHVITQSCCNDGSCVFACPVNCIHPTPDE---PGFATSEMLYIDPVACVDCGACVSACP 57 Query: 115 VDAI 118 V AI Sbjct: 58 VGAI 61 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 1/44 (2%) Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 + C G C ACPV+ I P+ E T + LY D Sbjct: 1 MPHVITQSCCNDGSCVFACPVNCIHPTPD-EPGFATSEMLYIDP 43 >gi|167767746|ref|ZP_02439799.1| hypothetical protein CLOSS21_02281 [Clostridium sp. SS2/1] gi|167710485|gb|EDS21064.1| hypothetical protein CLOSS21_02281 [Clostridium sp. SS2/1] gi|291558899|emb|CBL37699.1| Iron only hydrogenase large subunit, C-terminal domain [butyrate-producing bacterium SSC/2] Length = 481 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 28/74 (37%), Gaps = 6/74 (8%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCI 104 R ++C C +C CP AI S P + YD ID KCI Sbjct: 118 PGHTRSRIDPQKCKECGMCAKACPYNAIAHVSRPCKDSCPVDAISYDEYGVSVIDEEKCI 177 Query: 105 YCGLCQEACPVDAI 118 CG C CP AI Sbjct: 178 RCGQCAAKCPFGAI 191 Score = 38.2 bits (87), Expect = 0.45, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 21/63 (33%), Gaps = 5/63 (7%) Query: 63 CIACKLCEAICPAQAI-----TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 C C + + R R ID KC CG+C +ACP +A Sbjct: 85 CADCPISSYVVTNNCQNCLGKDCIKACRFGAIEPGHTRSRIDPQKCKECGMCAKACPYNA 144 Query: 118 IVE 120 I Sbjct: 145 IAH 147 >gi|152990043|ref|YP_001355765.1| NADH-quinone oxidoreductase, chain G [Nitratiruptor sp. SB155-2] gi|151421904|dbj|BAF69408.1| NADH-quinone oxidoreductase, chain G [Nitratiruptor sp. SB155-2] Length = 758 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 26/78 (33%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 ++R CI C+ C +C + V + + + C Sbjct: 127 DQYRPIQKWNYIQYDPSLCILCEKCVHVCNEVIGDDAIEIEYGGYKSKIVPKNAETLDCT 186 Query: 105 YCGLCQEACPVDAIVEGP 122 +CG C CPV A++ Sbjct: 187 FCGECIAVCPVGALISSD 204 >gi|226324119|ref|ZP_03799637.1| hypothetical protein COPCOM_01897 [Coprococcus comes ATCC 27758] gi|225207668|gb|EEG90022.1| hypothetical protein COPCOM_01897 [Coprococcus comes ATCC 27758] Length = 482 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 25/68 (36%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110 +C C C CP AI P + YD ID KCI CG C Sbjct: 124 HIDASKCKECGQCAKACPYNAIAHLKRPCKFSCPVDAITYDEHGISIIDKNKCIRCGKCI 183 Query: 111 EACPVDAI 118 +CP AI Sbjct: 184 HSCPFGAI 191 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 23/62 (37%), Gaps = 13/62 (20%) Query: 61 ERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C C K C C AI R ID KC CG C +ACP +AI Sbjct: 97 ENCQNCLGKACINACKFGAIEPG-----------HYRSHIDASKCKECGQCAKACPYNAI 145 Query: 119 VE 120 Sbjct: 146 AH 147 >gi|170289107|ref|YP_001739345.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2] gi|170176610|gb|ACB09662.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2] Length = 626 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 30/69 (43%), Gaps = 10/69 (14%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 A ++Y + C C LC CP AIT E G Y I+ KC+ CGLC Sbjct: 567 AFKKYVINPDICKGCGLCARSCPQNAITGERGKP----------YTINQEKCVKCGLCAS 616 Query: 112 ACPVDAIVE 120 CP AI Sbjct: 617 KCPFKAIEL 625 Score = 41.2 bits (95), Expect = 0.041, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 16/39 (41%) Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 G +Y I+ C CGLC +CP +AI Sbjct: 555 HIEGECPSGMCTAFKKYVINPDICKGCGLCARSCPQNAI 593 >gi|3355643|emb|CAA08780.1| tungsten formylmethanofuran dehydrogenase subunit fwdF [Methanothermobacter wolfeii] Length = 349 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 35/72 (48%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R + ++ CI C +CE +CP AI I+ +D KC++CG Sbjct: 139 RKDLVTGEIEIDKDTCIYCGMCEEMCPVDAIEIDHQTPSSASPVVATDIRVDEDKCVHCG 198 Query: 108 LCQEACPVDAIV 119 +C+ CPVDAI+ Sbjct: 199 ICKRICPVDAIM 210 Score = 50.9 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 28/74 (37%), Positives = 35/74 (47%), Gaps = 1/74 (1%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 ++ +E CI CK CE CP AIT + T +ID CIYCG+C Sbjct: 102 PKIIKSAEIDDETCIQCKACETACPQDAIT-ITRELPERKDLVTGEIEIDKDTCIYCGMC 160 Query: 110 QEACPVDAIVEGPN 123 +E CPVDAI Sbjct: 161 EEMCPVDAIEIDHQ 174 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 27/86 (31%), Positives = 36/86 (41%), Gaps = 11/86 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-----DIDMIKCIYCGLCQEAC 113 E++C+ C +C+ ICP AI + ID C+ CG CQE C Sbjct: 190 DEDKCVHCGICKRICPVDAIMQVCRICPYGEYEIKTPEVTGTSYIDPELCVNCGWCQEIC 249 Query: 114 PVDAIVEGPNFEFATETRQELYYDKE 139 PVDA FE EL D++ Sbjct: 250 PVDAATVTKPFE------GELIIDQD 269 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 35/92 (38%), Gaps = 3/92 (3%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 + E + ++ C AC+ C +CP ++ P+ Sbjct: 240 VNCGWCQEICPVDAATVTKPFEGELIIDQDTCQACETCVMVCPCNVLSF---PKPEKPGE 296 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +T + D CIYCG C+ +CPV AI N Sbjct: 297 KTTKLHKDERFCIYCGACERSCPVTAITVKRN 328 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 4/89 (4%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG----PRCHDGTRRTV 94 E T R E + E +C+ C +C +ICP QA+ ++ + + Sbjct: 47 EVNPTGAMVRTEQEKSKIAIDENKCVLCGMCSSICPFQALDLQIDGTSIKELAEYPKIIK 106 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +ID CI C C+ ACP DAI Sbjct: 107 SAEIDDETCIQCKACETACPQDAITITRE 135 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 31/86 (36%), Gaps = 4/86 (4%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R RR + C C LC ICP AI + + + ID KC+ CG Sbjct: 16 RTGEENRRLIFQDCLCAVCGLCGEICPVSAIEVNPTGAMVRTEQEKSKIAIDENKCVLCG 75 Query: 108 LCQEACPVDA----IVEGPNFEFATE 129 +C CP A I E A Sbjct: 76 MCSSICPFQALDLQIDGTSIKELAEY 101 >gi|15828144|ref|NP_302407.1| ferredoxin, ferredoxin-NADP reductase [Mycobacterium leprae TN] gi|221230621|ref|YP_002504037.1| ferredoxin, ferredoxin-NADP reductase [Mycobacterium leprae Br4923] gi|17432976|sp|O33064|FPRB_MYCLE RecName: Full=Probable ferredoxin/ferredoxin--NADP reductase; Short=FNR gi|2440106|emb|CAB16679.1| ferredoxin [Mycobacterium leprae] gi|13093698|emb|CAC31089.1| ferredoxin, ferredoxin-NADP reductase [Mycobacterium leprae] gi|219933728|emb|CAR72231.1| ferredoxin, ferredoxin-NADP reductase [Mycobacterium leprae Br4923] Length = 555 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 3/64 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C C CP I G + ID + C+ CG C ACP Sbjct: 1 MPYIITQSCCNDGSCVFACPVNCIHPTPDE---PGFATSEMLYIDPVACVDCGACVSACP 57 Query: 115 VDAI 118 V AI Sbjct: 58 VGAI 61 Score = 37.8 bits (86), Expect = 0.55, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 1/44 (2%) Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 I C G C ACPV+ I P+ E T + LY D Sbjct: 1 MPYIITQSCCNDGSCVFACPVNCIHPTPD-EPGFATSEMLYIDP 43 >gi|300814458|ref|ZP_07094720.1| 4Fe-4S binding domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511428|gb|EFK38666.1| 4Fe-4S binding domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 505 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 6/66 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQEA 112 +E+CI C C CP AI + P + R DID KC+ CG C Sbjct: 146 DKEKCIRCGRCHEACPYNAIVMYDRPCAAVCGVKAIGSDDFDRADIDQDKCVACGRCIAT 205 Query: 113 CPVDAI 118 CP AI Sbjct: 206 CPFGAI 211 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 23/65 (35%), Gaps = 5/65 (7%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-----DIDMIKCIYCGLCQEACPVDA 117 C AC + P + + ID KCI CG C EACP +A Sbjct: 105 CEACPTKSYFVTNNCRKCIAHPCINVCPVNAISMGKDSTIIDKEKCIRCGRCHEACPYNA 164 Query: 118 IVEGP 122 IV Sbjct: 165 IVMYD 169 >gi|325960196|ref|YP_004291662.1| methyl-viologen-reducing hydrogenase subunit delta [Methanobacterium sp. AL-21] gi|325331628|gb|ADZ10690.1| methyl-viologen-reducing hydrogenase delta subunit [Methanobacterium sp. AL-21] Length = 771 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 25/69 (36%), Gaps = 7/69 (10%) Query: 59 GEERCIACKLCEAICPAQAITIES-------GPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 +RC +C C IC + + ID CI CG C E Sbjct: 239 DGDRCTSCGRCAEICSINVPDEFNFNLTLRNAAYKPFAGALPSSFSIDPDACIKCGKCVE 298 Query: 112 ACPVDAIVE 120 ACPVDAI Sbjct: 299 ACPVDAINL 307 Score = 38.5 bits (88), Expect = 0.34, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 12/62 (19%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++RC C C CPA+AI ++ ++D + C CG C C A+ Sbjct: 578 DQDRCNQCLSCLEQCPAKAIYLDK------------MVEVDPVACTGCGYCVSLCETKAL 625 Query: 119 VE 120 Sbjct: 626 SL 627 >gi|209694967|ref|YP_002262896.1| putative ferredoxin [Aliivibrio salmonicida LFI1238] gi|208008919|emb|CAQ79135.1| putative ferredoxin [Aliivibrio salmonicida LFI1238] Length = 558 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 10/81 (12%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C C C A+CP +A+ + + C+ CGLC ACP A+ Sbjct: 423 KDCTLCMGCVAVCPTRALHGDQD---------SPTLKFIEQDCVQCGLCVNACPEKALSM 473 Query: 121 GPNFEFATETRQE-LYYDKER 140 + E RQE KE Sbjct: 474 KVQMNWNKEERQETQIMHKED 494 Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 6/53 (11%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C CPA A+T E I+ C G C ACP +AI Sbjct: 189 CERCVDACPAGALTSEGTAETGHNI------QINPYLCQGVGTCSTACPTEAI 235 >gi|226323626|ref|ZP_03799144.1| hypothetical protein COPCOM_01401 [Coprococcus comes ATCC 27758] gi|225207810|gb|EEG90164.1| hypothetical protein COPCOM_01401 [Coprococcus comes ATCC 27758] Length = 622 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 27/68 (39%), Gaps = 10/68 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 LR++ E C C C CPA AI Y I+ KCI CG C E Sbjct: 563 LRKFQIDPEICKGCSKCARNCPAGAIEGVLK----------SPYHINQEKCIKCGACMEQ 612 Query: 113 CPVDAIVE 120 CP AI Sbjct: 613 CPFKAIHI 620 >gi|241663771|ref|YP_002982131.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Ralstonia pickettii 12D] gi|240865798|gb|ACS63459.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ralstonia pickettii 12D] Length = 719 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 9/79 (11%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ERC C C CP+QA+ ++ + C+ CGLC+ CP AI Sbjct: 587 NRERCTLCMACVGACPSQALRDQAE---------RPVLAMIERNCVQCGLCETTCPESAI 637 Query: 119 VEGPNFEFATETRQELYYD 137 P + E RQ + Sbjct: 638 ALVPRLNLSAEARQSATLN 656 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 7/55 (12%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C +C A AI + + C+ CG C ACP AI Sbjct: 334 VGCNACVDVCSASAIASQWKDGRGS-------VRVTPNLCVGCGACTTACPTGAI 381 Score = 38.9 bits (89), Expect = 0.26, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 18/48 (37%) Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 A + +G + R ID+ +C C C + CP AI Sbjct: 179 WPVHAGELAQVNGWLGAFEVKWRNRNPIDLDRCTRCNACIDVCPEGAI 226 Score = 35.1 bits (79), Expect = 3.8, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 25/91 (27%), Gaps = 19/91 (20%) Query: 28 FKAKTTINYPFEKGSTSPRFRGEHALRRYP-----NGEERCIACKLCEAICPAQAITIES 82 F +P G + A +RC C C +CP AI Sbjct: 171 FVPPMERRWPVHAGELAQVNGWLGAFEVKWRNRNPIDLDRCTRCNACIDVCPEGAID--- 227 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 Y ID+ C C +AC Sbjct: 228 -----------ALYQIDLDACRDHRACVKAC 247 >gi|224369236|ref|YP_002603400.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Desulfobacterium autotrophicum HRM2] gi|223691953|gb|ACN15236.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Desulfobacterium autotrophicum HRM2] Length = 402 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 30/83 (36%), Gaps = 4/83 (4%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100 G + HA C CK C C AI P ++T + +D Sbjct: 293 GKFPKPAQEVHAAFHAVIDGTACSGCKKCTKKCQIDAILATDIPA----QKKTFVHQVDR 348 Query: 101 IKCIYCGLCQEACPVDAIVEGPN 123 +CI CGLC CP AI N Sbjct: 349 DRCIGCGLCVGGCPEHAISMVEN 371 >gi|187929661|ref|YP_001900148.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Ralstonia pickettii 12J] gi|187726551|gb|ACD27716.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ralstonia pickettii 12J] Length = 719 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 31/79 (39%), Gaps = 9/79 (11%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ERC C C CP+QA+ ++ + C+ CGLC+ CP AI Sbjct: 587 NRERCTLCMACVGACPSQALRDQAE---------RPVLAMIERNCVQCGLCETTCPESAI 637 Query: 119 VEGPNFEFATETRQELYYD 137 P + E RQ + Sbjct: 638 ALVPRLNLSAEARQSATLN 656 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 7/55 (12%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C +C A AI + + C+ CG C ACP AI Sbjct: 334 VGCNACVDVCSASAIASQWKDGRGSVH-------VTPNLCVGCGACTTACPTGAI 381 Score = 37.8 bits (86), Expect = 0.52, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 18/48 (37%) Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 A + +G + R ID+ +C C C + CP AI Sbjct: 179 WPVHAGELAQVNGWLGAFEVQWRNRNPIDLDRCTRCNACIDVCPEGAI 226 Score = 35.1 bits (79), Expect = 3.5, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 25/91 (27%), Gaps = 19/91 (20%) Query: 28 FKAKTTINYPFEKGSTSPRFRGEHALRRYP-----NGEERCIACKLCEAICPAQAITIES 82 F +P G + A +RC C C +CP AI Sbjct: 171 FVPPMERRWPVHAGELAQVNGWLGAFEVQWRNRNPIDLDRCTRCNACIDVCPEGAID--- 227 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 Y ID+ C C +AC Sbjct: 228 -----------ALYQIDLDACRDHRACVKAC 247 >gi|123446216|ref|XP_001311861.1| pyruvate:ferredoxin oxidoreductase BII [Trichomonas vaginalis G3] gi|121893686|gb|EAX98931.1| pyruvate:ferredoxin oxidoreductase BII [Trichomonas vaginalis G3] Length = 1157 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 27/83 (32%), Gaps = 12/83 (14%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCHDGTRRTVRYDI 98 A+ E++CI C C +CP I + + R I Sbjct: 670 IAVTVPKWDEKKCIQCNTCAIVCPHAVIRPFLLKPEEVQGLTTLKAKGKEIKDYQFRIQI 729 Query: 99 DMIKCIYCGLCQEACPVDAIVEG 121 + C CG C +CP A+ Sbjct: 730 TPLDCTGCGTCVTSCPTKALSMT 752 >gi|15644176|ref|NP_229225.1| Fe-hydrogenase, subunit beta [Thermotoga maritima MSB8] gi|4981989|gb|AAD36495.1|AE001794_11 Fe-hydrogenase, subunit beta [Thermotoga maritima MSB8] gi|2865516|gb|AAC02685.1| Fe-hydrogenase beta subunit [Thermotoga maritima MSB8] Length = 626 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 30/69 (43%), Gaps = 10/69 (14%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 A ++Y + C C LC CP AIT E G Y ID KC+ CGLC Sbjct: 567 AFKKYVINPDICKGCGLCARSCPQNAITGERGKP----------YTIDQEKCVKCGLCAS 616 Query: 112 ACPVDAIVE 120 CP AI Sbjct: 617 KCPFKAIEL 625 Score = 41.6 bits (96), Expect = 0.039, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 16/39 (41%) Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 G +Y I+ C CGLC +CP +AI Sbjct: 555 HIEGECPSGMCTAFKKYVINPDICKGCGLCARSCPQNAI 593 >gi|150017381|ref|YP_001309635.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium beijerinckii NCIMB 8052] gi|149903846|gb|ABR34679.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium beijerinckii NCIMB 8052] Length = 282 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 29/88 (32%), Gaps = 11/88 (12%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P G A + C CK+CE C AI++ Sbjct: 138 CPNNCVKAPISDLGFLAQNEPKVEADMCKGCKICERTCKVDAISMVHKKAV--------- 188 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPN 123 ID KCI CG C +ACP A+ Sbjct: 189 --IDYDKCISCGQCVKACPFKAMKLEKE 214 >gi|254508907|ref|ZP_05121015.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus 16] gi|219548146|gb|EED25163.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus 16] Length = 553 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 9/102 (8%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + C C C A+CP +A+ + + C+ CGLC++ACP +A Sbjct: 415 CESKDCTLCMSCVAVCPTRALHTDGT---------SPSLQFVEQDCVQCGLCEKACPENA 465 Query: 118 IVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 + P + ++TRQ E R + D Sbjct: 466 LSLTPRMNWDSQTRQNAVVLHEEKAAECIRCHKPFAPQSMID 507 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 6/54 (11%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 C+ C CPA A++ E + R +I+ C G C ACP +AI Sbjct: 186 CERCVDACPAGALSSEGSDKTGH------RIEINPYLCQGVGTCATACPTEAIH 233 >gi|117921346|ref|YP_870538.1| FAD linked oxidase domain-containing protein [Shewanella sp. ANA-3] gi|117613678|gb|ABK49132.1| FAD linked oxidase domain protein [Shewanella sp. ANA-3] Length = 934 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 9/93 (9%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 E + I + + D + KCI CG C++ CP A+ P AT Sbjct: 509 EGLLNPGVILNDDSTVHVKNIKPCPVVDDFVDKCIECGFCEKTCPTSALNFSPRQRIATL 568 Query: 130 TRQELYYDKERLLNNGDRWESEIVRNIVTDSPY 162 R+ ERL +GD+ + D+ Y Sbjct: 569 -RE-----IERLEQSGDK---AAAEKMRADAKY 592 Score = 38.2 bits (87), Expect = 0.41, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 26/76 (34%), Gaps = 18/76 (23%) Query: 57 PNGEERCIACKLCEAICPAQAITIES-----------------GPRCHDGTRRTVRYDID 99 + ++CI C CE CP A+ + R +YD+ Sbjct: 536 DDFVDKCIECGFCEKTCPTSALNFSPRQRIATLREIERLEQSGDKAAAEKMRADAKYDVI 595 Query: 100 MIKCIYCGLCQEACPV 115 C C LC ACPV Sbjct: 596 -DTCAACQLCTIACPV 610 >gi|297625386|ref|YP_003687149.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase:4Fe-4S ferredoxin, iron-sulfur binding:Aromatic-ring hydroxylase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921151|emb|CBL55698.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase:4Fe-4S ferredoxin, iron-sulfur binding:Aromatic-ring hydroxylase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 543 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 23/62 (37%), Gaps = 9/62 (14%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C C CP AI + RY D KC CG C E CPV AI Sbjct: 490 NCFECDGCYGSCPEDAIVKLG---------KGHRYRFDYDKCTGCGTCFEQCPVHAIEMI 540 Query: 122 PN 123 P Sbjct: 541 PE 542 >gi|224368543|ref|YP_002602706.1| HdrA3 [Desulfobacterium autotrophicum HRM2] gi|223691259|gb|ACN14542.1| HdrA3 [Desulfobacterium autotrophicum HRM2] Length = 418 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 6/62 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RCI C CE +CP A++ + +D+ C CG C CP AI Sbjct: 115 DPGRCILCGRCEKVCPENAVS------PTICHALPRTFLVDINACTGCGKCVAVCPTHAI 168 Query: 119 VE 120 Sbjct: 169 DL 170 Score = 37.4 bits (85), Expect = 0.64, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 15/30 (50%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 ID +CI CG C++ CP +A+ Sbjct: 113 RIDPGRCILCGRCEKVCPENAVSPTICHAL 142 >gi|297195797|ref|ZP_06913195.1| ferredoxin-NADP+ reductase [Streptomyces pristinaespiralis ATCC 25486] gi|297152954|gb|EFH32068.1| ferredoxin-NADP+ reductase [Streptomyces pristinaespiralis ATCC 25486] Length = 452 Score = 53.2 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 3/59 (5%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C + C A+CP I R T ID CI CG C +ACPVDAI Sbjct: 7 QTCCSDATCVAVCPVNCIHPTPEERA---FGSTEMLYIDPRSCIDCGACADACPVDAIF 62 >gi|281412804|ref|YP_003346883.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10] gi|281373907|gb|ADA67469.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10] Length = 626 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 30/69 (43%), Gaps = 10/69 (14%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 A ++Y + C C LC CP AIT E G Y ID KC+ CGLC Sbjct: 567 AFKKYVINPDICKGCGLCARSCPQNAITGERGKP----------YTIDQEKCVKCGLCAS 616 Query: 112 ACPVDAIVE 120 CP AI Sbjct: 617 KCPFKAIEL 625 Score = 41.2 bits (95), Expect = 0.041, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 16/39 (41%) Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 G +Y I+ C CGLC +CP +AI Sbjct: 555 HIEGECPSGMCTAFKKYVINPDICKGCGLCARSCPQNAI 593 >gi|229588699|ref|YP_002870818.1| putative electron transpor-like protein [Pseudomonas fluorescens SBW25] gi|229360565|emb|CAY47422.1| putative electron transpor-related protein [Pseudomonas fluorescens SBW25] Length = 387 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 29/78 (37%), Gaps = 10/78 (12%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 RGE + E CI C C CP AI + + + + + +C Sbjct: 63 DTHRGEAPAQVAYIREAECIGCTKCIQACPVDAIVGAAK----------LMHTVIIDECT 112 Query: 105 YCGLCQEACPVDAIVEGP 122 C LC CPVD I P Sbjct: 113 GCDLCVAPCPVDCIEMHP 130 >gi|254830988|ref|ZP_05235643.1| hypothetical protein Lmon1_06498 [Listeria monocytogenes 10403S] Length = 995 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 3/85 (3%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E+ + + + Y ++CI C C C + R + D Sbjct: 124 ERPYREKGYLNDFSHPFYRYDPDQCILCGRCVEACQQVQVNETLSIDWERSQPRVIWDDD 183 Query: 99 DMIK---CIYCGLCQEACPVDAIVE 120 C+ CGLC CP +A++E Sbjct: 184 RPANLSSCVSCGLCATVCPCNALME 208 Score = 40.5 bits (93), Expect = 0.074, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 9/69 (13%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCI 104 R N C C C+ + + +E R + Y D +CI Sbjct: 90 RILENHLLYCTVCDNNNGNCKVHNTTELLGVEKQERPYREKGYLNDFSHPFYRYDPDQCI 149 Query: 105 YCGLCQEAC 113 CG C EAC Sbjct: 150 LCGRCVEAC 158 >gi|21228665|ref|NP_634587.1| ferredoxin [Methanosarcina mazei Go1] gi|20907167|gb|AAM32259.1| Ferredoxin [Methanosarcina mazei Go1] Length = 369 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 11/69 (15%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E+CI C C ICP A ++E I+ CI CG C E CP +AI Sbjct: 194 EKCIGCGNCVEICPVGAASLEGD-----------VSRINPGVCISCGQCMEVCPENAIDL 242 Query: 121 GPNFEFATE 129 + Sbjct: 243 NWEQDIPEF 251 Score = 41.6 bits (96), Expect = 0.035, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 19/57 (33%), Gaps = 4/57 (7%) Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVRY----DIDMIKCIYCGLCQEACPVDA 117 K AI + ++ Y + KCI CG C E CPV A Sbjct: 154 HFKGHIMAGFGGAIKNLAMGCAPAAGKKDQHYPTSPHVVEEKCIGCGNCVEICPVGA 210 >gi|282862944|ref|ZP_06272004.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Streptomyces sp. ACTE] gi|282561926|gb|EFB67468.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Streptomyces sp. ACTE] Length = 548 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 26/59 (44%), Gaps = 3/59 (5%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C + C A+CP I R T ID CI CG C +ACPVDAI Sbjct: 7 QTCCSDATCIAVCPVNCIHPTPEERD---FGSTEMLHIDPKSCIDCGACADACPVDAIF 62 >gi|218288430|ref|ZP_03492720.1| formate dehydrogenase, alpha subunit [Alicyclobacillus acidocaldarius LAA1] gi|218241403|gb|EED08577.1| formate dehydrogenase, alpha subunit [Alicyclobacillus acidocaldarius LAA1] Length = 994 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 3/83 (3%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD--- 97 T + + + Y ++CI C C C ++ R + + Sbjct: 136 PFTPKPYEVDMSNPFYRYDPQQCILCGRCVEACQNLQVSEVLSIAWDREVPRVIWDNDVP 195 Query: 98 IDMIKCIYCGLCQEACPVDAIVE 120 I+ C+ CG C CP +A++E Sbjct: 196 INESSCVSCGHCVTVCPTNALME 218 >gi|189499447|ref|YP_001958917.1| NADH dehydrogenase (quinone) [Chlorobium phaeobacteroides BS1] gi|189494888|gb|ACE03436.1| NADH dehydrogenase (quinone) [Chlorobium phaeobacteroides BS1] Length = 594 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 39/97 (40%), Gaps = 13/97 (13%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 L+Y F+ + + ++ L + ++ C C +CE CP AIT Sbjct: 508 TTLKY-FRDEYVAHVEEKRCPAGVC----KGLITHTIMQDTCTGCSICERYCPVDAITGV 562 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ + ID C+ CG+C E C DAI Sbjct: 563 --------IKKPESWVIDHDLCVNCGMCVEVCNSDAI 591 >gi|299066025|emb|CBJ37206.1| putative 4Fe-4S ferredoxin [Ralstonia solanacearum CMR15] Length = 736 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 9/79 (11%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RC C C + CP+QA+ ++ + C+ CGLC CP DAI Sbjct: 604 DRARCTLCMACVSACPSQALRDQAE---------RPVLSMIEHNCVQCGLCDTTCPEDAI 654 Query: 119 VEGPNFEFATETRQELYYD 137 P + E RQ + + Sbjct: 655 ALVPRLNLSAEARQPVVLN 673 Score = 40.5 bits (93), Expect = 0.088, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 7/55 (12%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C +C A AI + + C+ CG C ACP A+ Sbjct: 351 VGCDACVRVCSAAAIASQWKDGRGSVH-------VTPNLCVGCGACTTACPTGAL 398 Score = 38.2 bits (87), Expect = 0.38, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 19/48 (39%) Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 A SG + R ID+ +C +C C + CP DAI Sbjct: 196 WPIQAGERVQVSGWLGVFEVQWQSRNPIDLDRCTHCNACIDVCPEDAI 243 Score = 35.1 bits (79), Expect = 3.5, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 36/118 (30%), Gaps = 21/118 (17%) Query: 30 AKTTINYPF---EKGSTSPRFRGEHALRRYPN--GEERCIACKLCEAICPAQAITIESGP 84 +P E+ S + N +RC C C +CP AI Sbjct: 190 PPMARRWPIQAGERVQVSGWLGVFEVQWQSRNPIDLDRCTHCNACIDVCPEDAID----- 244 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEAC-PVDAIVEGPNFEFATET-RQELYYDKER 140 Y ID+ C C +AC AI G T + R +L +D Sbjct: 245 ---------TLYQIDLEACRDHRDCVKACGEAMAIDFGRLDAPQTASGRFDLIFDLND 293 >gi|297625916|ref|YP_003687679.1| Pyruvate:ferredoxin (Flavodoxin) oxidoreductase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921681|emb|CBL56238.1| Pyruvate:ferredoxin (Flavodoxin) oxidoreductase [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 1239 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 29/94 (30%), Gaps = 16/94 (17%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTR----------------RTVRYDIDMI 101 E CI C C CP AI I+ P + + Sbjct: 705 WDESLCIDCGKCAITCPHAAIRIKVAPEAEFADAPEGFKSKNYRDRKLAGHRLVVQVAPD 764 Query: 102 KCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 C CG+C + CP + E + E R+E Sbjct: 765 DCTGCGICVDVCPAKSKTEVKHKSLNMEPRREHL 798 >gi|260437208|ref|ZP_05791024.1| hydrogenase subunit [Butyrivibrio crossotus DSM 2876] gi|292810521|gb|EFF69726.1| hydrogenase subunit [Butyrivibrio crossotus DSM 2876] Length = 481 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 25/71 (35%), Gaps = 6/71 (8%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCG 107 +C C +C CP AI P + YD ID KCI CG Sbjct: 121 HHSKIDGSKCKECGMCAKACPYNAIAHLKRPCKFSCPVDAITYDEYGISVIDEKKCIRCG 180 Query: 108 LCQEACPVDAI 118 C CP AI Sbjct: 181 QCIHKCPFGAI 191 >gi|20092258|ref|NP_618333.1| hypothetical protein MA3446 [Methanosarcina acetivorans C2A] gi|19917495|gb|AAM06813.1| conserved hypothetical protein [Methanosarcina acetivorans C2A] Length = 360 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 11/68 (16%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 +CI C C ICP A ++E ID CI CG C E CP AI Sbjct: 186 KCIGCGRCVEICPVGAASLEGD-----------VSRIDPGICISCGQCMEVCPEGAIDIN 234 Query: 122 PNFEFATE 129 + Sbjct: 235 WEEDIPEF 242 Score = 41.2 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 19/57 (33%), Gaps = 4/57 (7%) Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVRY----DIDMIKCIYCGLCQEACPVDA 117 K AI + ++ Y + KCI CG C E CPV A Sbjct: 145 HFKGHIMAGFGGAIKNLAMGCAPAAGKKDQHYPTSPHVVEAKCIGCGRCVEICPVGA 201 >gi|322650604|gb|EFY47009.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] Length = 124 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 25/65 (38%) Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRN 155 + ++ +CI+CG C+E CP AI +E A +++ L N Sbjct: 12 WQFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRPFAVQ 71 Query: 156 IVTDS 160 D Sbjct: 72 KEIDY 76 >gi|307243639|ref|ZP_07525782.1| 4Fe-4S binding domain protein [Peptostreptococcus stomatis DSM 17678] gi|306493008|gb|EFM65018.1| 4Fe-4S binding domain protein [Peptostreptococcus stomatis DSM 17678] Length = 516 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQ 110 ++ CI C C+A+CP AI P + R ID KC+ CG+C Sbjct: 147 FIDQDLCIKCGRCKAVCPYDAIAKLERPCARACGMDAIESDKYGRASIDYDKCVSCGVCI 206 Query: 111 EACPVDAI 118 +CP AI Sbjct: 207 SSCPFGAI 214 Score = 38.2 bits (87), Expect = 0.35, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 13/60 (21%) Query: 61 ERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C + C +CP +A+++ +G ID CI CG C+ CP DAI Sbjct: 120 DICRGCLARPCVEVCPKKAVSMVNGKSF-----------IDQDLCIKCGRCKAVCPYDAI 168 >gi|282883119|ref|ZP_06291718.1| Fe-hydrogenase large subunit family protein [Peptoniphilus lacrimalis 315-B] gi|281296931|gb|EFA89428.1| Fe-hydrogenase large subunit family protein [Peptoniphilus lacrimalis 315-B] Length = 505 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 6/66 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMIKCIYCGLCQEA 112 +++CI C C CP AI + P + R DID KC+ CG C Sbjct: 146 DKDKCIRCGRCHEACPYNAIVMYDRPCAAVCGVKAIGSDDFDRADIDQDKCVACGRCIAT 205 Query: 113 CPVDAI 118 CP AI Sbjct: 206 CPFGAI 211 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 23/65 (35%), Gaps = 5/65 (7%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-----DIDMIKCIYCGLCQEACPVDA 117 C AC + P + + ID KCI CG C EACP +A Sbjct: 105 CEACPTKSYFVTNNCRKCIAHPCINVCPVNAISMGKDSTIIDKDKCIRCGRCHEACPYNA 164 Query: 118 IVEGP 122 IV Sbjct: 165 IVMYD 169 >gi|16804624|ref|NP_466109.1| hypothetical protein lmo2586 [Listeria monocytogenes EGD-e] gi|224503621|ref|ZP_03671928.1| hypothetical protein LmonFR_14143 [Listeria monocytogenes FSL R2-561] gi|16412074|emb|CAD00664.1| lmo2586 [Listeria monocytogenes EGD-e] Length = 995 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 3/85 (3%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E+ + + + Y ++CI C C C + R + D Sbjct: 124 ERPYREKGYLNDFSHPFYRYDPDQCILCGRCVEACQQVQVNETLSIDWERSQPRVIWDDD 183 Query: 99 DMIK---CIYCGLCQEACPVDAIVE 120 C+ CGLC CP +A++E Sbjct: 184 RPANLSSCVSCGLCATVCPCNALME 208 Score = 40.5 bits (93), Expect = 0.078, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 9/69 (13%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCI 104 R N C C C+ + + +E R + Y D +CI Sbjct: 90 RILENHLLYCTVCDNNNGNCKVHNTTELLGVEKQERPYREKGYLNDFSHPFYRYDPDQCI 149 Query: 105 YCGLCQEAC 113 CG C EAC Sbjct: 150 LCGRCVEAC 158 >gi|258510840|ref|YP_003184274.1| formate dehydrogenase, alpha subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477566|gb|ACV57885.1| formate dehydrogenase, alpha subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 994 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 3/83 (3%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD--- 97 T + + + Y ++CI C C C ++ R + + Sbjct: 136 PFTPKPYEVDMSNPFYRYDPQQCILCGRCVEACQNLQVSEVLSIAWDREVPRVIWDNDVP 195 Query: 98 IDMIKCIYCGLCQEACPVDAIVE 120 I+ C+ CG C CP +A++E Sbjct: 196 INESSCVSCGHCVTVCPTNALME 218 >gi|88797367|ref|ZP_01112957.1| pyridine nucleotide-disulphide oxidoreductase family protein [Reinekea sp. MED297] gi|88780236|gb|EAR11421.1| pyridine nucleotide-disulphide oxidoreductase family protein [Reinekea sp. MED297] Length = 547 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 30/96 (31%), Gaps = 5/96 (5%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVR 95 P E+ + + RC +C C A ++ G + Sbjct: 455 PAERLDSFDEIVQGLNDEQAHFEASRCYSCGTCFECDGCFGACPEQAITILGTG----LG 510 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 Y ID +C CG C CP AI P E E Sbjct: 511 YRIDYDRCTGCGACVLQCPTHAISLFPVTELEQEDH 546 >gi|258514612|ref|YP_003190834.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfotomaculum acetoxidans DSM 771] gi|257778317|gb|ACV62211.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfotomaculum acetoxidans DSM 771] Length = 368 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 32/69 (46%), Gaps = 13/69 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA- 117 E++CI C C +CP QAIT+ +ID+ KCI CG C CPV A Sbjct: 191 DEDKCIGCGGCSEVCPEQAITMSEMKA-----------NIDLDKCIGCGECLTVCPVKAN 239 Query: 118 -IVEGPNFE 125 I + E Sbjct: 240 GIDWQTDLE 248 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 17/42 (40%) Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 + P + + +D KCI CG C E CP AI Sbjct: 172 MGGAPAIGKKEQHGTKIVVDEDKCIGCGGCSEVCPEQAITMS 213 >gi|116873952|ref|YP_850733.1| formate dehydrogenase, alpha subunit [Listeria welshimeri serovar 6b str. SLCC5334] gi|116742830|emb|CAK21954.1| formate dehydrogenase, alpha subunit [Listeria welshimeri serovar 6b str. SLCC5334] Length = 995 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 3/85 (3%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E+ + + + Y ++CI C C C + R + D Sbjct: 124 ERPYREKGYLNDFSHPFYRYDPDQCILCGRCVEACQQVQVNETLSIDWERSQPRVIWDDD 183 Query: 99 DMIK---CIYCGLCQEACPVDAIVE 120 C+ CGLC CP +A++E Sbjct: 184 RPANLSSCVSCGLCATVCPCNALME 208 Score = 40.5 bits (93), Expect = 0.079, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 9/69 (13%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCI 104 R N C C C+ + + +E R + Y D +CI Sbjct: 90 RILENHLLYCTVCDNNNGNCKVHNTTELLGVEKQERPYREKGYLNDFSHPFYRYDPDQCI 149 Query: 105 YCGLCQEAC 113 CG C EAC Sbjct: 150 LCGRCVEAC 158 >gi|120405980|ref|YP_955809.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Mycobacterium vanbaalenii PYR-1] gi|119958798|gb|ABM15803.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Mycobacterium vanbaalenii PYR-1] Length = 559 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 3/64 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C + C CP I G ID + C+ CG C ACP Sbjct: 1 MPHVITQSCCSDGSCVYACPVNCIHPTPDE---PGFATAEMLYIDPVACVDCGACVSACP 57 Query: 115 VDAI 118 V AI Sbjct: 58 VGAI 61 Score = 35.5 bits (80), Expect = 2.3, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 1/44 (2%) Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 + C G C ACPV+ I P+ E T + LY D Sbjct: 1 MPHVITQSCCSDGSCVYACPVNCIHPTPD-EPGFATAEMLYIDP 43 >gi|303243651|ref|ZP_07329992.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanothermococcus okinawensis IH1] gi|302485893|gb|EFL48816.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanothermococcus okinawensis IH1] Length = 426 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 31/113 (27%), Positives = 47/113 (41%), Gaps = 14/113 (12%) Query: 9 SFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKL 68 S +L EFV + + K E R+R YP +CI+C Sbjct: 4 SIWYLYEFVR------KKWIKKFLDAKTEEEIVIAPKRYRKVPPTVVYPE---KCISCGA 54 Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C+ CP+ AI + + P+ + +ID+ CI CG C E+CP + G Sbjct: 55 CKGSCPSFAIELVNNPKYNK-----KIPEIDVGSCISCGNCVESCPTKVLEIG 102 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 40/105 (38%), Gaps = 17/105 (16%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + Y E +CI C++C +C S T I+ C+ CGLC C Sbjct: 310 KCYIIDENKCIGCRICYKVCNVDNAISISSE--------TRLPYINPEYCVRCGLCYREC 361 Query: 114 PVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158 PVDAI E + + +L D +ES I ++ Sbjct: 362 PVDAIGLTKTEE---------VFGRYKLRKIRDEFESIIRSDLEE 397 Score = 38.9 bits (89), Expect = 0.22, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 37/85 (43%), Gaps = 12/85 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 EE C+ C C+ +CP AI V + ID CI C C +ACPV Sbjct: 124 DEELCVNCSSCKLVCPVDAIDYNG-----------VSHVIDKNICIGCNRCIDACPVIDA 172 Query: 119 VEGPNFEFATETRQELYYDK-ERLL 142 ++ + + E + Y K ERLL Sbjct: 173 IKTYDEKILKEKIDKSQYLKFERLL 197 Score = 38.5 bits (88), Expect = 0.30, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 16/61 (26%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI+C C +CP + ++++CI CG C E CP +A+ G Sbjct: 257 CISCGNCVDVCP----------------GYIDLKNYNVVECIKCGECIEVCPTNAMRIGE 300 Query: 123 N 123 Sbjct: 301 I 301 Score = 37.4 bits (85), Expect = 0.74, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 19/48 (39%) Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 A T E R+ + KCI CG C+ +CP AI N Sbjct: 22 DAKTEEEIVIAPKRYRKVPPTVVYPEKCISCGACKGSCPSFAIELVNN 69 >gi|317497525|ref|ZP_07955844.1| 4Fe-4S binding domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316895208|gb|EFV17371.1| 4Fe-4S binding domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 495 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDG------TRRTVRYDIDMIKCIYCGL 108 +E+CI C C+ +CP AI P + T R I+ KC+ CG+ Sbjct: 142 YSYIDQEKCIKCGQCKKVCPYGAIYERKRPCANACGVGAIETDYAGRAKINPDKCVSCGM 201 Query: 109 CQEACPVDAI 118 C CP AI Sbjct: 202 CMVNCPFGAI 211 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 5/68 (7%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-----IDMIKCIYCGLCQEACP 114 C CK I Q + P ++ + + ID KCI CG C++ CP Sbjct: 102 PSACNECKEKAFIVGEQCQGCMAHPCMEVCPKKAISFKDGYSYIDQEKCIKCGQCKKVCP 161 Query: 115 VDAIVEGP 122 AI E Sbjct: 162 YGAIYERK 169 >gi|317509391|ref|ZP_07967010.1| 4Fe-4S binding domain-containing protein [Segniliparus rugosus ATCC BAA-974] gi|316252314|gb|EFV11765.1| 4Fe-4S binding domain-containing protein [Segniliparus rugosus ATCC BAA-974] Length = 548 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 22/64 (34%), Gaps = 3/64 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C + C CP I ID C+ CG C +ACP Sbjct: 1 MPHVVTQSCCSDGSCVFACPVNCIHPTPDEPD---FLTAEMLHIDPAACVDCGACVDACP 57 Query: 115 VDAI 118 V+AI Sbjct: 58 VEAI 61 Score = 33.9 bits (76), Expect = 6.7, Method: Composition-based stats. Identities = 9/21 (42%), Positives = 11/21 (52%) Query: 103 CIYCGLCQEACPVDAIVEGPN 123 C G C ACPV+ I P+ Sbjct: 9 CCSDGSCVFACPVNCIHPTPD 29 >gi|311069204|ref|YP_003974127.1| YrhE protein [Bacillus atrophaeus 1942] gi|310869721|gb|ADP33196.1| YrhE [Bacillus atrophaeus 1942] Length = 979 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 4/91 (4%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+ + + Y +CIAC C +C + R Sbjct: 123 HQKYPYTPKEDPSCAV-DMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWERERPR 181 Query: 93 TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120 + I+ C+ CG C CP +A++E Sbjct: 182 VIWDQGVAINESSCVSCGQCVTVCPCNALME 212 >gi|312127263|ref|YP_003992137.1| pyruvate/ketoisovalerate oxidoreductase subunit gamma [Caldicellulosiruptor hydrothermalis 108] gi|311777282|gb|ADQ06768.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit [Caldicellulosiruptor hydrothermalis 108] Length = 339 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 2/66 (3%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E+CI C LCE CP R +G + D C C C + CP A+VE Sbjct: 252 EKCINCGLCETTCPD--YVFVWDRRIENGKLKMFNLGPDYQYCKGCLRCVDVCPTAALVE 309 Query: 121 GPNFEF 126 G E+ Sbjct: 310 GIEREY 315 >gi|288572802|ref|ZP_06391159.1| NADH dehydrogenase (quinone) [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568543|gb|EFC90100.1| NADH dehydrogenase (quinone) [Dethiosulfovibrio peptidovorans DSM 11002] Length = 589 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 10/66 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L Y E+CI C C CP AI+ E + ID CI CG C+ + Sbjct: 531 LIHYIIDPEKCIGCTKCAKNCPVDAISGEIKKP----------HVIDDSICIRCGKCKVS 580 Query: 113 CPVDAI 118 CPV AI Sbjct: 581 CPVGAI 586 Score = 41.2 bits (95), Expect = 0.048, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 18/49 (36%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + I + Y ID KCI C C + CPVDAI Sbjct: 508 KYFKDEYMAHIVDHRCPATVCPSLIHYIIDPEKCIGCTKCAKNCPVDAI 556 >gi|88859825|ref|ZP_01134464.1| electron transport complex protein RnfC [Pseudoalteromonas tunicata D2] gi|88817819|gb|EAR27635.1| electron transport complex protein RnfC [Pseudoalteromonas tunicata D2] Length = 872 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 44/128 (34%), Gaps = 6/128 (4%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 T+ P K + + + + E+ CI C C CPA + + Sbjct: 348 TVRVPVIKTTNCILAPSQVE-QPFAGDEKACIRCSACADACPAS-LLPQQLQWFAKSQEF 405 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEI 152 ++ CI CG C CP I + A +E +K + +R+E Sbjct: 406 DKLEQHNLFDCIECGACAFVCP-SEIPLVQYYRVAKVQIKEQKAEKAKAERAKERFE--- 461 Query: 153 VRNIVTDS 160 +RN + Sbjct: 462 IRNRRLEK 469 >gi|114320814|ref|YP_742497.1| putative glutamate synthase (NADPH) small subunit [Alkalilimnicola ehrlichii MLHE-1] gi|114227208|gb|ABI57007.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Alkalilimnicola ehrlichii MLHE-1] Length = 648 Score = 52.8 bits (125), Expect = 1e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 4/59 (6%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C C CP A+ G Y +CI C +C++ CP I G Sbjct: 591 CFECDNCLIYCPQDAVERVPKKERATGRYVQTDYT----RCIGCHICRDVCPTGYIEMG 645 >gi|290892750|ref|ZP_06555742.1| formate dehydrogenase [Listeria monocytogenes FSL J2-071] gi|290557810|gb|EFD91332.1| formate dehydrogenase [Listeria monocytogenes FSL J2-071] Length = 995 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 3/85 (3%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E+ + + + Y ++CI C C C + R + D Sbjct: 124 ERPYREKGYLNDFSHPFYRYDPDQCILCGRCVEACQQVQVNETLSIDWERSQPRVIWDDD 183 Query: 99 DMIK---CIYCGLCQEACPVDAIVE 120 C+ CGLC CP +A++E Sbjct: 184 RPANLSSCVSCGLCATVCPCNALME 208 Score = 40.5 bits (93), Expect = 0.082, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 9/69 (13%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCI 104 R N C C C+ + + +E R + Y D +CI Sbjct: 90 RILENHLLYCTVCDNNNGNCKVHNTTELLGVEKQERPYREKGYLNDFSHPFYRYDPDQCI 149 Query: 105 YCGLCQEAC 113 CG C EAC Sbjct: 150 LCGRCVEAC 158 >gi|227499429|ref|ZP_03929540.1| pyruvate synthase [Anaerococcus tetradius ATCC 35098] gi|227218491|gb|EEI83734.1| pyruvate synthase [Anaerococcus tetradius ATCC 35098] Length = 1175 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 31/117 (26%), Positives = 43/117 (36%), Gaps = 20/117 (17%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTR- 91 FE G+T RG AL + CI C C +CP I T E +G Sbjct: 665 FESGTTQYEKRG-IALTVPEWQIDNCIQCNQCSYVCPHAVIRPFLVTEEEKANAPEGFTT 723 Query: 92 ----------RTVRYDIDMIKCIYCGLCQEAC--PVDAIVEGPNFEFATETRQELYY 136 R + + C CG C + C P A++ P FE E ++ +Y Sbjct: 724 KKAIGKGMDGYEFRIQVSPLDCTGCGNCADVCPAPKKALLMKP-FEEEVEKEKDNWY 779 >gi|210615774|ref|ZP_03290755.1| hypothetical protein CLONEX_02973 [Clostridium nexile DSM 1787] gi|210150110|gb|EEA81119.1| hypothetical protein CLONEX_02973 [Clostridium nexile DSM 1787] Length = 502 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQ 110 +E+CI C C+++CP AI+ + P G+ + R ID KC+ CG+C Sbjct: 147 YIDQEKCIKCGKCKSVCPYDAISKKERPCAKACGVNAIGSDKMGRAHIDNDKCVSCGMCM 206 Query: 111 EACPVDAI 118 +CP AI Sbjct: 207 VSCPFGAI 214 Score = 41.2 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 13/64 (20%) Query: 57 PNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C C C +CP AI+++ G R ID KCI CG C+ CP Sbjct: 116 YEVSDMCKGCVAHPCREVCPVGAISMKKG-----------RSYIDQEKCIKCGKCKSVCP 164 Query: 115 VDAI 118 DAI Sbjct: 165 YDAI 168 >gi|167766696|ref|ZP_02438749.1| hypothetical protein CLOSS21_01202 [Clostridium sp. SS2/1] gi|167711633|gb|EDS22212.1| hypothetical protein CLOSS21_01202 [Clostridium sp. SS2/1] gi|291558362|emb|CBL37162.1| Iron only hydrogenase large subunit, C-terminal domain [butyrate-producing bacterium SSC/2] Length = 495 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDG------TRRTVRYDIDMIKCIYCGL 108 +E+CI C C+ +CP AI P + T R I+ KC+ CG+ Sbjct: 142 YSYIDQEKCIKCGQCKKVCPYGAIYERKRPCANACGVGAIETDYAGRAKINPDKCVSCGM 201 Query: 109 CQEACPVDAI 118 C CP AI Sbjct: 202 CMVNCPFGAI 211 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 5/68 (7%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-----IDMIKCIYCGLCQEACP 114 C CK I Q + P ++ + + ID KCI CG C++ CP Sbjct: 102 PSACNECKEKAFIVGEQCQGCMAHPCMEVCPKKAISFKDGYSYIDQEKCIKCGQCKKVCP 161 Query: 115 VDAIVEGP 122 AI E Sbjct: 162 YGAIYERK 169 >gi|149191926|ref|ZP_01870158.1| iron-sulfur cluster-binding protein [Vibrio shilonii AK1] gi|148834231|gb|EDL51236.1| iron-sulfur cluster-binding protein [Vibrio shilonii AK1] Length = 553 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 9/75 (12%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++C C C A+CP +A+ + D CI CG+C++ACP A+ Sbjct: 418 DKCTLCMACVAVCPTKALHNDGDRPA---------LDFIEQDCIQCGMCEKACPESALSL 468 Query: 121 GPNFEFATETRQELY 135 + +E+R+ Sbjct: 469 TQRINWDSESRRSAV 483 Score = 40.5 bits (93), Expect = 0.072, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 6/54 (11%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 C+ C CPA A++ E + + +I+ C G C ACP +AI Sbjct: 186 CERCVDACPAGALSSEGNDKIGH------KIEINPYLCQGVGTCATACPTEAIH 233 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 7/23 (30%), Positives = 9/23 (39%) Query: 97 DIDMIKCIYCGLCQEACPVDAIV 119 + KC C C CP A+ Sbjct: 414 ECATDKCTLCMACVAVCPTKALH 436 Score = 34.3 bits (77), Expect = 5.3, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 2/49 (4%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR--YDIDMIKCIYCG 107 + CI C +CE CP A+++ +RR+ ++ +C+ CG Sbjct: 449 QDCIQCGMCEKACPESALSLTQRINWDSESRRSAVALHEEKAAECLRCG 497 >gi|284803026|ref|YP_003414891.1| hypothetical protein LM5578_2783 [Listeria monocytogenes 08-5578] gi|284996167|ref|YP_003417935.1| hypothetical protein LM5923_2732 [Listeria monocytogenes 08-5923] gi|284058588|gb|ADB69529.1| hypothetical protein LM5578_2783 [Listeria monocytogenes 08-5578] gi|284061634|gb|ADB72573.1| hypothetical protein LM5923_2732 [Listeria monocytogenes 08-5923] Length = 995 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 3/85 (3%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E+ + + + Y ++CI C C C + R + D Sbjct: 124 ERPYREKGYLNDFSHPFYRYDPDQCILCGRCVEACQQVQVNETLSIDWERSQPRVIWDDD 183 Query: 99 DMIK---CIYCGLCQEACPVDAIVE 120 C+ CGLC CP +A++E Sbjct: 184 RPANLSSCVSCGLCATVCPCNALME 208 Score = 40.5 bits (93), Expect = 0.084, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 9/69 (13%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCI 104 R N C C C+ + + +E R + Y D +CI Sbjct: 90 RILENHLLYCTVCDNNNGNCKVHNTTELLGVEKQERPYREKGYLNDFSHPFYRYDPDQCI 149 Query: 105 YCGLCQEAC 113 CG C EAC Sbjct: 150 LCGRCVEAC 158 >gi|224500458|ref|ZP_03668807.1| hypothetical protein LmonF1_12634 [Listeria monocytogenes Finland 1988] Length = 995 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 3/85 (3%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E+ + + + Y ++CI C C C + R + D Sbjct: 124 ERPYREKGYLNDFSHPFYRYDPDQCILCGRCVEACQQVQVNETLSIDWERSQPRVIWDDD 183 Query: 99 DMIK---CIYCGLCQEACPVDAIVE 120 C+ CGLC CP +A++E Sbjct: 184 RPANLSSCVSCGLCATVCPCNALME 208 Score = 40.5 bits (93), Expect = 0.085, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 9/69 (13%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCI 104 R N C C C+ + + +E R + Y D +CI Sbjct: 90 RILENHLLYCTVCDNNNGNCKVHNTTELLGVEKQERPYREKGYLNDFSHPFYRYDPDQCI 149 Query: 105 YCGLCQEAC 113 CG C EAC Sbjct: 150 LCGRCVEAC 158 >gi|164686831|ref|ZP_02210859.1| hypothetical protein CLOBAR_00427 [Clostridium bartlettii DSM 16795] gi|164604221|gb|EDQ97686.1| hypothetical protein CLOBAR_00427 [Clostridium bartlettii DSM 16795] Length = 274 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 16/89 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++CI C LC+ C I + I + CI CG C CPV A+ Sbjct: 4 DRDKCIGCTLCKQDCIVSDIEMIDKKAH-----------IRNLTCIKCGHCIAICPVKAV 52 Query: 119 VEGPNFEFA-----TETRQELYYDKERLL 142 E++ +++ D ++L+ Sbjct: 53 SCDDEEEYSMEEVIPYEKEDFTIDADKLM 81 >gi|47096769|ref|ZP_00234352.1| formate dehydrogenase, alpha subunit [Listeria monocytogenes str. 1/2a F6854] gi|254900960|ref|ZP_05260884.1| formate dehydrogenase Alpha subunit [Listeria monocytogenes J0161] gi|254913826|ref|ZP_05263838.1| formate dehydrogenase [Listeria monocytogenes J2818] gi|254938215|ref|ZP_05269912.1| formate dehydrogenase [Listeria monocytogenes F6900] gi|47014855|gb|EAL05805.1| formate dehydrogenase, alpha subunit [Listeria monocytogenes str. 1/2a F6854] gi|258610827|gb|EEW23435.1| formate dehydrogenase [Listeria monocytogenes F6900] gi|293591843|gb|EFG00178.1| formate dehydrogenase [Listeria monocytogenes J2818] Length = 995 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 3/85 (3%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E+ + + + Y ++CI C C C + R + D Sbjct: 124 ERPYREKGYLNDFSHPFYRYDPDQCILCGRCVEACQQVQVNETLSIDWERSQPRVIWDDD 183 Query: 99 DMIK---CIYCGLCQEACPVDAIVE 120 C+ CGLC CP +A++E Sbjct: 184 RPANLSSCVSCGLCATVCPCNALME 208 Score = 40.5 bits (93), Expect = 0.085, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 9/69 (13%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCI 104 R N C C C+ + + +E R + Y D +CI Sbjct: 90 RILENHLLYCTVCDNNNGNCKVHNTTELLGVEKQERPYREKGYLNDFSHPFYRYDPDQCI 149 Query: 105 YCGLCQEAC 113 CG C EAC Sbjct: 150 LCGRCVEAC 158 >gi|302349195|ref|YP_003816833.1| Putative sulfur reductase catalytic hydrophilic subunit, fused PsrA-PsrB-like protein [Acidilobus saccharovorans 345-15] gi|302329607|gb|ADL19802.1| Putative sulfur reductase catalytic hydrophilic subunit, fused PsrA-PsrB-like protein [Acidilobus saccharovorans 345-15] Length = 886 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 24/80 (30%), Gaps = 12/80 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDG--TRRTVRYDIDMIKCIYCGLCQEACPVD 116 RCI C C C G R D C+ CGLC + CP Sbjct: 136 DMNRCIKCFRCVKACDEVQGYHVWRAWGRGGRIMIRPDGPDFAHSSCVSCGLCVDVCPTG 195 Query: 117 AIVEGPNFEFATETRQELYY 136 A+ E R L Y Sbjct: 196 AL----------EDRSVLIY 205 >gi|282899808|ref|ZP_06307770.1| ferredoxin (flavodoxin) oxidoreductase [Cylindrospermopsis raciborskii CS-505] gi|281195290|gb|EFA70225.1| ferredoxin (flavodoxin) oxidoreductase [Cylindrospermopsis raciborskii CS-505] Length = 1200 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 37/134 (27%), Gaps = 30/134 (22%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ--------------AITIESGPR 85 TS + A + CI C C +CP A Sbjct: 681 PTGTSKWEKRNIAQEIPVWDPQVCIQCGKCVMVCPHGVIRSKVYQPEELVNAPPTFKTAN 740 Query: 86 CHDGTRRTVRYDID--MIKCIYCGLCQEACP--------VDAIVEGPNFEFATETRQ--E 133 + +++ I C C LC + CP AI + R+ + Sbjct: 741 AKEHHWHELKFTIQVAAEDCTGCALCVDVCPAKNKAQPKKKAINMAQQRPLREQERENWD 800 Query: 134 LYYDKERLLNNGDR 147 + + L N DR Sbjct: 801 FFLN----LPNPDR 810 >gi|289422669|ref|ZP_06424509.1| hydrogenase large subunit domain protein [Peptostreptococcus anaerobius 653-L] gi|289156848|gb|EFD05473.1| hydrogenase large subunit domain protein [Peptostreptococcus anaerobius 653-L] Length = 515 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQ 110 +E+CI C C++ CP AI P + + R ID KC+ CGLC Sbjct: 147 FIDQEKCIKCGRCKSSCPYGAIAKLERPCANACGMDAITSDKYGRAKIDYDKCVSCGLCM 206 Query: 111 EACPVDAI 118 +CP AI Sbjct: 207 SSCPFGAI 214 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 5/61 (8%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-----IDMIKCIYCGLCQEACPVDA 117 C +C E + P + + ID KCI CG C+ +CP A Sbjct: 108 CNSCPDNEFFTTNTCRGCLARPCVEVCPKNAISMVNGKSFIDQEKCIKCGRCKSSCPYGA 167 Query: 118 I 118 I Sbjct: 168 I 168 >gi|254829511|ref|ZP_05234198.1| formate dehydrogenase [Listeria monocytogenes FSL N3-165] gi|258601926|gb|EEW15251.1| formate dehydrogenase [Listeria monocytogenes FSL N3-165] Length = 995 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 3/85 (3%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E+ + + + Y ++CI C C C + R + D Sbjct: 124 ERPYREKGYLNDFSHPFYRYDPDQCILCGRCVEACQQVQVNETLSIDWERSQPRVIWDDD 183 Query: 99 DMIK---CIYCGLCQEACPVDAIVE 120 C+ CGLC CP +A++E Sbjct: 184 RPANLSSCVSCGLCATVCPCNALME 208 Score = 40.5 bits (93), Expect = 0.087, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 9/69 (13%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCI 104 R N C C C+ + + +E R + Y D +CI Sbjct: 90 RILENHLLYCTVCDNNNGNCKVHNTTELLGVEKQERPYREKGYLNDFSHPFYRYDPDQCI 149 Query: 105 YCGLCQEAC 113 CG C EAC Sbjct: 150 LCGRCVEAC 158 >gi|226225132|ref|YP_002759239.1| formate dehydrogenase alpha chain [Listeria monocytogenes Clip81459] gi|254826313|ref|ZP_05231314.1| formate dehydrogenase [Listeria monocytogenes FSL J1-194] gi|254854412|ref|ZP_05243760.1| formate dehydrogenase [Listeria monocytogenes FSL R2-503] gi|255519930|ref|ZP_05387167.1| formate dehydrogenase alpha chain [Listeria monocytogenes FSL J1-175] gi|300766085|ref|ZP_07076053.1| formate dehydrogenase, alpha subunit [Listeria monocytogenes FSL N1-017] gi|225877594|emb|CAS06308.1| Putative formate dehydrogenase alpha chain [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258607812|gb|EEW20420.1| formate dehydrogenase [Listeria monocytogenes FSL R2-503] gi|293595554|gb|EFG03315.1| formate dehydrogenase [Listeria monocytogenes FSL J1-194] gi|300513231|gb|EFK40310.1| formate dehydrogenase, alpha subunit [Listeria monocytogenes FSL N1-017] Length = 995 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 3/85 (3%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E+ + + + Y ++CI C C C + R + D Sbjct: 124 ERPYREKGYLNDFSHPFYRYDPDQCILCGRCVEACQQVQVNETLSIDWERSQPRVIWDDD 183 Query: 99 DMIK---CIYCGLCQEACPVDAIVE 120 C+ CGLC CP +A++E Sbjct: 184 RPANLSSCVSCGLCATVCPCNALME 208 Score = 40.5 bits (93), Expect = 0.087, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 9/69 (13%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCI 104 R N C C C+ + + +E R + Y D +CI Sbjct: 90 RILENHLLYCTVCDNNNGNCKVHNTTELLGVEKQERPYREKGYLNDFSHPFYRYDPDQCI 149 Query: 105 YCGLCQEAC 113 CG C EAC Sbjct: 150 LCGRCVEAC 158 >gi|47094039|ref|ZP_00231769.1| formate dehydrogenase, alpha subunit [Listeria monocytogenes str. 4b H7858] gi|47017589|gb|EAL08392.1| formate dehydrogenase, alpha subunit [Listeria monocytogenes str. 4b H7858] Length = 995 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 3/85 (3%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E+ + + + Y ++CI C C C + R + D Sbjct: 124 ERPYREKGYLNDFSHPFYRYDPDQCILCGRCVEACQQVQVNETLSIDWERSQPRVIWDDD 183 Query: 99 DMIK---CIYCGLCQEACPVDAIVE 120 C+ CGLC CP +A++E Sbjct: 184 RPANLSSCVSCGLCATVCPCNALME 208 Score = 40.5 bits (93), Expect = 0.087, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 9/69 (13%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCI 104 R N C C C+ + + +E R + Y D +CI Sbjct: 90 RILENHLLYCTVCDNNNGNCKVHNTTELLGVEKQERPYREKGYLNDFSHPFYRYDPDQCI 149 Query: 105 YCGLCQEAC 113 CG C EAC Sbjct: 150 LCGRCVEAC 158 >gi|167630654|ref|YP_001681153.1| ferredoxin (4fe-4s) domain, putative iron-only hydrogenase [Heliobacterium modesticaldum Ice1] gi|167593394|gb|ABZ85142.1| ferredoxin (4fe-4s) domain, putative iron-only hydrogenase [Heliobacterium modesticaldum Ice1] Length = 484 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 36/104 (34%), Gaps = 21/104 (20%) Query: 36 YPFEKGSTSPRFRGEHALRRYP---------------NGEERCIACKLCEAICPAQAITI 80 P E+ + + RG A +E+CI C C CP AIT Sbjct: 88 CPVERFTVTEACRGCIAHPCMEACPVGAISQINRRAIINQEKCIECGRCRQACPYGAITD 147 Query: 81 ESGPRCHDGTRRTVRY------DIDMIKCIYCGLCQEACPVDAI 118 P + + Y ID KCI CG C CP AI Sbjct: 148 TQRPCIKACPVKAISYSEDKLATIDQKKCINCGQCAYRCPFGAI 191 >gi|119952330|ref|YP_949931.1| putative ferredoxin-NADP reductase [Arthrobacter aurescens TC1] gi|119951460|gb|ABM10370.1| putative Ferredoxin-NADP reductase [Arthrobacter aurescens TC1] Length = 531 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 5/84 (5%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C + C +CP Q I G + ID CI CG C + CPV AI Sbjct: 7 HGCCSDASCIPVCPVQCIRPRPG---DPDFTTAEQLYIDPATCIDCGACMDECPVSAIH- 62 Query: 121 GPNFEFATETRQELYYDKERLLNN 144 P ++ E + L + + ++N Sbjct: 63 -PEWDLPDELSEYLAVNADYYVDN 85 >gi|160880195|ref|YP_001559163.1| hydrogenase, Fe-only [Clostridium phytofermentans ISDg] gi|160428861|gb|ABX42424.1| hydrogenase, Fe-only [Clostridium phytofermentans ISDg] Length = 644 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 10/64 (15%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + CI C C +CP I + + + ID +C +CG C CPV+AI Sbjct: 221 MDNCIGCDKCTKVCPVDCIVGDFKEQ----------HYIDYTRCTHCGACLSTCPVNAIT 270 Query: 120 EGPN 123 G N Sbjct: 271 SGNN 274 >gi|15899539|ref|NP_344144.1| formate dehydrogenase Alpha subunit (fdhF-2) [Sulfolobus solfataricus P2] gi|284173469|ref|ZP_06387438.1| formate dehydrogenase Alpha subunit (fdhF-2) [Sulfolobus solfataricus 98/2] gi|13816176|gb|AAK42934.1| Formate dehydrogenase Alpha subunit (fdhF-2) [Sulfolobus solfataricus P2] gi|261601311|gb|ACX90914.1| formate dehydrogenase, alpha subunit [Sulfolobus solfataricus 98/2] Length = 979 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQE 111 Y +CI C C C A+ R V + I C+ CG C Sbjct: 139 FYIYDPSQCILCGRCVEACQDFAVNEVIWINWDLNPPRVVWDNGNPIGNSSCVNCGTCVT 198 Query: 112 ACPVDAIVE 120 CPV+A++E Sbjct: 199 VCPVNALME 207 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 23/55 (41%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C L EA+ + + + + Y D +CI CG C EAC A+ E Sbjct: 110 CVLHEAVIKLNINSQKYVEKPYQTDESGPFYIYDPSQCILCGRCVEACQDFAVNE 164 >gi|84385487|ref|ZP_00988518.1| iron-sulfur cluster-binding protein [Vibrio splendidus 12B01] gi|84379467|gb|EAP96319.1| iron-sulfur cluster-binding protein [Vibrio splendidus 12B01] Length = 553 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 36/102 (35%), Gaps = 9/102 (8%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + C C C A+CP +A+ + + CI CGLC++ACP + Sbjct: 415 CESKDCTLCMSCVAVCPTRALHTDGA---------SPSLKFVEQDCIQCGLCEKACPENV 465 Query: 118 IVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 + P + E RQ+ E R + D Sbjct: 466 LTLTPRMNWVKEERQQAVVIHEEKAAECLRCHKPFAPQSMID 507 Score = 37.4 bits (85), Expect = 0.68, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 6/53 (11%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C CPA A++ E + + +I+ C G C +CP +AI Sbjct: 186 CERCVDACPAGALSSEGSDKTGH------KIEINPYLCQGVGTCATSCPTEAI 232 >gi|324999651|ref|ZP_08120763.1| molybdopterin oxidoreductase Fe4S4 region [Pseudonocardia sp. P1] Length = 325 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 4/101 (3%) Query: 29 KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88 + + P + + + Y RCI C C C A + Sbjct: 152 RHPGHHHAPDGRTRATVEQPVKIDNDLYVRDYSRCIMCYKCVNACGTDAQFTFAIAAAGR 211 Query: 89 GTRRTVRYDIDMIK----CIYCGLCQEACPVDAIVEGPNFE 125 G + + D+ C+YCG C CP A+V + Sbjct: 212 GFDARIATEHDVELPDSACVYCGNCIGVCPTGALVSVAEHD 252 >gi|159043051|ref|YP_001531845.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein [Dinoroseobacter shibae DFL 12] gi|157910811|gb|ABV92244.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dinoroseobacter shibae DFL 12] Length = 672 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 27/81 (33%), Gaps = 9/81 (11%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C C+ C +CP A+ T C+ CGLC CP AI Sbjct: 519 DPEACTLCQACTGVCPTGALLDNPE---------TPMLRFTESACVQCGLCAATCPETAI 569 Query: 119 VEGPNFEFATETRQELYYDKE 139 P +FA +E Sbjct: 570 TLTPQLDFAAWDTPRRILHEE 590 >gi|46908757|ref|YP_015146.1| formate dehydrogenase, alpha subunit [Listeria monocytogenes serotype 4b str. F2365] gi|46882029|gb|AAT05323.1| formate dehydrogenase, alpha subunit [Listeria monocytogenes serotype 4b str. F2365] Length = 995 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 3/85 (3%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E+ + + + Y ++CI C C C + R + D Sbjct: 124 ERPYREKGYLNDFSHPFYRYDPDQCILCGRCVEACQQVQVNETLSIDWERSQPRVIWDDD 183 Query: 99 DMIK---CIYCGLCQEACPVDAIVE 120 C+ CGLC CP +A++E Sbjct: 184 RPANLSSCVSCGLCATVCPCNALME 208 Score = 40.5 bits (93), Expect = 0.088, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 9/69 (13%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCI 104 R N C C C+ + + +E R + Y D +CI Sbjct: 90 RILENHLLYCTVCDNNNGNCKVHNTTELLGVEKQERPYREKGYLNDFSHPFYRYDPDQCI 149 Query: 105 YCGLCQEAC 113 CG C EAC Sbjct: 150 LCGRCVEAC 158 >gi|328469843|gb|EGF40756.1| formate dehydrogenase, alpha subunit [Listeria monocytogenes 220] Length = 962 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 3/85 (3%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E+ + + + Y ++CI C C C + R + D Sbjct: 124 ERPYREKGYLNDFSHPFYRYDPDQCILCGRCVEACQQVQVNETLSIDWERSQPRVIWDDD 183 Query: 99 DMIK---CIYCGLCQEACPVDAIVE 120 C+ CGLC CP +A++E Sbjct: 184 RPANLSSCVSCGLCATVCPCNALME 208 Score = 40.5 bits (93), Expect = 0.088, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 9/69 (13%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCI 104 R N C C C+ + + +E R + Y D +CI Sbjct: 90 RILENHLLYCTVCDNNNGNCKVHNTTELLGVEKQERPYREKGYLNDFSHPFYRYDPDQCI 149 Query: 105 YCGLCQEAC 113 CG C EAC Sbjct: 150 LCGRCVEAC 158 >gi|313672137|ref|YP_004050248.1| glutamate synthase (nadph) gltb3 subunit [Calditerrivibrio nitroreducens DSM 19672] gi|312938893|gb|ADR18085.1| glutamate synthase (NADPH) GltB3 subunit [Calditerrivibrio nitroreducens DSM 19672] Length = 776 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 29/108 (26%), Gaps = 2/108 (1%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 L F KA +K G+ + +RC++C C Sbjct: 664 MFKGLP--LSNFAKAPMIPQDRIKKEYYEQINLGKTGKVAPEDETKRCLSCGFCRDCELC 721 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 E Y + KCI CG+C CP N Sbjct: 722 LNSCPEQAISRIQKDGGKFEYISNPNKCIGCGICAGICPCGIWEMIDN 769 >gi|169247660|gb|ACA51660.1| HydB [Thermoanaerobacterium saccharolyticum] Length = 596 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 15/97 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 +RY F+ + + ++ AL ++ ++C C +C CP AI+ Sbjct: 513 TIRY-FRDEYEAHIKEKRCPAGVC----QALLKFRIDPDKCKGCGICAKNCPTNAISG-- 565 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + + ID KCI CG C + CP DAI Sbjct: 566 --------KVKQPHVIDQDKCIKCGTCMDKCPFDAIY 594 >gi|218961763|ref|YP_001741538.1| putative electron transfer flavoprotein alpha-subunit (etfA and 4Fe-4S ferredoxin modules) [Candidatus Cloacamonas acidaminovorans] gi|167730420|emb|CAO81332.1| putative electron transfer flavoprotein alpha-subunit (etfA and 4Fe-4S ferredoxin modules) [Candidatus Cloacamonas acidaminovorans] Length = 398 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 27/70 (38%), Gaps = 11/70 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + E+C+ C C C AI IE ID KC+ CG C A Sbjct: 1 MFMIEVLIEKCVGCGACLRACAYDAIKIEEKLAI-----------IDSDKCVLCGACVSA 49 Query: 113 CPVDAIVEGP 122 CP DAI+ Sbjct: 50 CPFDAILLRK 59 >gi|91203805|emb|CAJ71458.1| similar to NADH:ubiquinone oxidoreductase 51 kDa subunit [Candidatus Kuenenia stuttgartiensis] Length = 594 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 31/101 (30%), Positives = 41/101 (40%), Gaps = 15/101 (14%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80 L+Y FK + + K L ++ EE C C LC CP AIT Sbjct: 509 MTTLKY-FKDEYVEHIKENKCRAGVC----KELIKFSVIEEACTGCHLCYKNCPVDAITG 563 Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 E+ + ID CI CG+C E C DAI++G Sbjct: 564 ETKK----------VHHIDQKICIKCGMCYEVCKFDAILKG 594 >gi|254932171|ref|ZP_05265530.1| formate dehydrogenase [Listeria monocytogenes HPB2262] gi|293583728|gb|EFF95760.1| formate dehydrogenase [Listeria monocytogenes HPB2262] gi|332313016|gb|EGJ26111.1| Putative oxidoreductase yjgC [Listeria monocytogenes str. Scott A] Length = 995 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 3/85 (3%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E+ + + + Y ++CI C C C + R + D Sbjct: 124 ERPYREKGYLNDFSHPFYRYDPDQCILCGRCVEACQQVQVNETLSIDWERSQPRVIWDDD 183 Query: 99 DMIK---CIYCGLCQEACPVDAIVE 120 C+ CGLC CP +A++E Sbjct: 184 RPANLSSCVSCGLCATVCPCNALME 208 Score = 40.5 bits (93), Expect = 0.088, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 9/69 (13%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCI 104 R N C C C+ + + +E R + Y D +CI Sbjct: 90 RILENHLLYCTVCDNNNGNCKVHNTTELLGVEKQERPYREKGYLNDFSHPFYRYDPDQCI 149 Query: 105 YCGLCQEAC 113 CG C EAC Sbjct: 150 LCGRCVEAC 158 >gi|303257906|ref|ZP_07343915.1| [Fe] hydrogenase gamma [Burkholderiales bacterium 1_1_47] gi|331000429|ref|ZP_08324104.1| putative ferredoxin hydrogenase HydA1 [Parasutterella excrementihominis YIT 11859] gi|302859249|gb|EFL82331.1| [Fe] hydrogenase gamma [Burkholderiales bacterium 1_1_47] gi|329571761|gb|EGG53441.1| putative ferredoxin hydrogenase HydA1 [Parasutterella excrementihominis YIT 11859] Length = 597 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 4/79 (5%) Query: 59 GEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 +C+ C C +C A+ I+ + +D KC+ CG C CP Sbjct: 146 DVNKCVRCMRCVEVCNKIQGIGALRIDEIGTKAGVCLNGTKDWVDSTKCVRCGQCIMVCP 205 Query: 115 VDAIVEGPNFEFATETRQE 133 A++ N + A E ++ Sbjct: 206 TGALMSTDNVDKAREILED 224 >gi|266619152|ref|ZP_06112087.1| ferredoxin hydrogenase [Clostridium hathewayi DSM 13479] gi|288869333|gb|EFD01632.1| ferredoxin hydrogenase [Clostridium hathewayi DSM 13479] Length = 457 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 34/101 (33%), Gaps = 23/101 (22%) Query: 25 RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84 ++ F T I P E + S EE CI C C+ +C Sbjct: 3 KHLF---TDIRVPIEPDNPSVM-----------RHEELCIKCGQCKTVCT---------E 39 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 + D CI+CG C CPV I E P +E Sbjct: 40 SIGVAGYYDLLKTGDTAICIHCGQCANVCPVGCITEVPEWE 80 >gi|258513529|ref|YP_003189751.1| NADH dehydrogenase (quinone) [Desulfotomaculum acetoxidans DSM 771] gi|257777234|gb|ACV61128.1| NADH dehydrogenase (quinone) [Desulfotomaculum acetoxidans DSM 771] Length = 597 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 15/98 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 LR+ F+ + + ++ AL Y C C LC CPA AI+ E Sbjct: 514 TLRH-FREEYIAHIKDKRCPAGAC----QALVTYYIDARACKGCGLCSKNCPAGAISGEK 568 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + ID KCI CG C++ C ++I Sbjct: 569 KKP----------HVIDAGKCIKCGTCKDKCKFNSIFI 596 >gi|239625212|ref|ZP_04668243.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239519442|gb|EEQ59308.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 507 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR------YDIDMIKCIYCGLCQ 110 ++RCI C C +C AI I+ P + DID KC+ CG+C Sbjct: 148 HIDQDRCIRCGRCADVCSYNAIIIQERPCAAACGMDCIHSDENGKADIDYDKCVSCGMCL 207 Query: 111 EACPVDAI 118 CP AI Sbjct: 208 VNCPFGAI 215 Score = 38.2 bits (87), Expect = 0.39, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 7/66 (10%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-------IDMIKCIYCGLCQEACPV 115 C AC + + P + V D ID +CI CG C + C Sbjct: 107 CNACHEKRVVVTDGCQGCLAHPCVEVCPKDAVSIDRSNGRSHIDQDRCIRCGRCADVCSY 166 Query: 116 DAIVEG 121 +AI+ Sbjct: 167 NAIIIQ 172 >gi|291535976|emb|CBL09088.1| Iron only hydrogenase large subunit, C-terminal domain [Roseburia intestinalis M50/1] Length = 482 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110 +C C C CP AI P + Y+ ID KCI CG C Sbjct: 124 HIDPSKCKECGRCAQACPYNAIAHLKRPCKFSCPVNAITYNEYGISVIDKEKCIRCGKCI 183 Query: 111 EACPVDAI 118 +CP AI Sbjct: 184 HSCPFGAI 191 >gi|227485286|ref|ZP_03915602.1| hydrogenase large subunit domain protein [Anaerococcus lactolyticus ATCC 51172] gi|227236746|gb|EEI86761.1| hydrogenase large subunit domain protein [Anaerococcus lactolyticus ATCC 51172] Length = 508 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 6/66 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112 +++CI C C CP AI + P + ++ D ID KC+ CG C Sbjct: 146 DQDKCIKCGKCVEACPYNAINHQKRPCAESCGVKAIKSDELGRASIDENKCVACGRCIIT 205 Query: 113 CPVDAI 118 CP AI Sbjct: 206 CPFGAI 211 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 25/65 (38%), Gaps = 5/65 (7%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-----DIDMIKCIYCGLCQEACPVDA 117 C AC + Q P + + V Y ID KCI CG C EACP +A Sbjct: 105 CEACPENKVTVTDQCHACIGHPCVNVCPKNAVSYSSKGAKIDQDKCIKCGKCVEACPYNA 164 Query: 118 IVEGP 122 I Sbjct: 165 INHQK 169 >gi|218883891|ref|YP_002428273.1| Pyruvate synthase subunit porD [Desulfurococcus kamchatkensis 1221n] gi|218765507|gb|ACL10906.1| Pyruvate synthase subunit porD [Desulfurococcus kamchatkensis 1221n] Length = 93 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 11/67 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +C C +C CP AI + +++ C CG+C CPV AI Sbjct: 36 DHNKCTKCMICWLFCPDMAIVWDGEK-----------IQVNLDYCKGCGICAHECPVKAI 84 Query: 119 VEGPNFE 125 P FE Sbjct: 85 SMVPEFE 91 >gi|307729120|ref|YP_003906344.1| dihydroorotate dehydrogenase family protein [Burkholderia sp. CCGE1003] gi|307583655|gb|ADN57053.1| dihydroorotate dehydrogenase family protein [Burkholderia sp. CCGE1003] Length = 440 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 8/75 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117 +++CI C LC C A + + +++ +C+ C LC CPV Sbjct: 341 DQDKCIQCGLCHIACEDTAHQAITKEKAGV-----RHFEVMDSECVGCNLCMHVCPVEQC 395 Query: 118 IVE--GPNFEFATET 130 I N E+A T Sbjct: 396 ITMERVDNGEYANWT 410 >gi|90420729|ref|ZP_01228635.1| formate dehydrogenase, alpha subunit [Aurantimonas manganoxydans SI85-9A1] gi|90335020|gb|EAS48781.1| formate dehydrogenase, alpha subunit [Aurantimonas manganoxydans SI85-9A1] Length = 931 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 5/84 (5%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID----MIKCIYCGLCQEACP 114 + CI C C C + + G R +DI + C+ CG C +ACP Sbjct: 150 NMDACITCGACVRACR-EVQVNDVIGMAERGNRSVPVFDIHDPMGLSTCVTCGECVQACP 208 Query: 115 VDAIVEGPNFEFATETRQELYYDK 138 A+ E + R +DK Sbjct: 209 TGALYEKSLMDETHTVRAVQDFDK 232 >gi|261856376|ref|YP_003263659.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Halothiobacillus neapolitanus c2] gi|261836845|gb|ACX96612.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Halothiobacillus neapolitanus c2] Length = 274 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 31/131 (23%), Positives = 48/131 (36%), Gaps = 15/131 (11%) Query: 29 KAKTTINYPFEKGST-SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH 87 K + T +P GS G L E C C CP++AIT+ Sbjct: 11 KGRATTGWPESAGSDGQEGVLGLPKLNADQCSEGA-QGCTKCVTSCPSEAITLNVTEDQE 69 Query: 88 DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY-----YDKERLL 142 D+D +C+ C LC E CP A ++ FA R +L ++ L Sbjct: 70 P------HIDLDYARCVGCQLCTETCPSGAFSPSNDWAFAVRDRADLSRLARPATPDKKL 123 Query: 143 NNGDRWESEIV 153 ++W+ + Sbjct: 124 E--EKWQKSLA 132 >gi|117922345|ref|YP_871537.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Shewanella sp. ANA-3] gi|117614677|gb|ABK50131.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella sp. ANA-3] Length = 553 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 30/82 (36%), Gaps = 9/82 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+C C C AICP A+ C+ CGLC+ ACP I Sbjct: 419 NVEKCTLCMSCVAICPTMALQDGGDKPALH---------FIEQNCVQCGLCEAACPEKVI 469 Query: 119 VEGPNFEFATETRQELYYDKER 140 P F RQ+L KE Sbjct: 470 SLTPQINFDKAARQQLQTLKEE 491 Score = 38.5 bits (88), Expect = 0.29, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 11/53 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C CPA AI+ + ++D C G C ACP AI Sbjct: 195 CNRCLNFCPADAISSVAKK-----------IEVDPYLCHGAGSCASACPTGAI 236 >gi|213028131|ref|ZP_03342578.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 118 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 25/65 (38%) Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRN 155 + ++ +CI+CG C+E CP AI +E A +++ L N Sbjct: 6 WQFNLGRCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRPFAVQ 65 Query: 156 IVTDS 160 D Sbjct: 66 KEIDY 70 >gi|189485599|ref|YP_001956540.1| electron transfer flavoprotein alpha subunit [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287558|dbj|BAG14079.1| electron transfer flavoprotein alpha subunit [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 409 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 3/71 (4%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++C+ CK+CE +CP AI+I ++ ID+ KC YCG C + C +AI Sbjct: 10 DKCVGCKMCENVCPFNAISIVERLEYP---KKFKLAVIDLNKCTYCGSCVQTCKFNAIEL 66 Query: 121 GPNFEFATETR 131 + + + Sbjct: 67 KKDVPLSVVDK 77 Score = 38.2 bits (87), Expect = 0.39, Method: Composition-based stats. Identities = 9/29 (31%), Positives = 15/29 (51%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 + KC+ C +C+ CP +AI E+ Sbjct: 7 VFTDKCVGCKMCENVCPFNAISIVERLEY 35 >gi|158521485|ref|YP_001529355.1| nitroreductase [Desulfococcus oleovorans Hxd3] gi|158510311|gb|ABW67278.1| nitroreductase [Desulfococcus oleovorans Hxd3] Length = 334 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 24/82 (29%), Gaps = 5/82 (6%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + + E+C C C CP E G V Y Sbjct: 5 LKQAYLPDMNFPVRTIDAEKCSKCGRCFETCPTYGYRWEKGQVPEP-----VGYGGFSQA 59 Query: 103 CIYCGLCQEACPVDAIVEGPNF 124 CI CG C CP AI +F Sbjct: 60 CINCGNCIAVCPTGAITMTGSF 81 >gi|51244894|ref|YP_064778.1| hydrogenase, component I-formate hydrogenlyase subunit 7 [Desulfotalea psychrophila LSv54] gi|50875931|emb|CAG35771.1| related to hydrogenase, component I-formate hydrogenlyase subunit 7 [Desulfotalea psychrophila LSv54] Length = 248 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 42/117 (35%), Gaps = 17/117 (14%) Query: 19 AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78 + + T YP E S R+RG + + + E + C ICP + I Sbjct: 1 MLKIIKNKMEQGNKTAKYPKEPISLYHRYRGMPVINKDCSAEIA----RQCLDICPQECI 56 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 E+ ID+ +C +CG C+ + + NFE R EL Sbjct: 57 DPEAK-------------TIDLGRCTFCGQCETVAEGNFVKFSQNFELGAANRDELI 100 >gi|323499047|ref|ZP_08104027.1| iron-sulfur cluster-binding protein [Vibrio sinaloensis DSM 21326] gi|323315882|gb|EGA68913.1| iron-sulfur cluster-binding protein [Vibrio sinaloensis DSM 21326] Length = 553 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 34/84 (40%), Gaps = 10/84 (11%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + C C C A+CP +A+ + + CI CGLC +ACP Sbjct: 415 CESKDCTLCMSCVAVCPTRALHTDGA---------SPSLQFIEQDCIQCGLCTKACPEQV 465 Query: 118 IVEGPNFEFATETRQEL-YYDKER 140 + P + E+RQ+ +E+ Sbjct: 466 LTMTPRMNWDQESRQQAKVIHQEK 489 Score = 40.9 bits (94), Expect = 0.068, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 6/54 (11%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 C C CPA A++ E + R +I+ C G C ACP +AI Sbjct: 186 CDRCVDACPAGALSSEGNDKTGH------RIEINPYLCQGVGTCATACPTEAIH 233 >gi|315641113|ref|ZP_07896192.1| pyruvate-ferredoxin oxidoreductase [Enterococcus italicus DSM 15952] gi|315483121|gb|EFU73638.1| pyruvate-ferredoxin oxidoreductase [Enterococcus italicus DSM 15952] Length = 1234 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 31/156 (19%), Positives = 49/156 (31%), Gaps = 28/156 (17%) Query: 2 RIFRCNVSFLFLKEFV------GAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRR 55 + + ++KE V L + + + T T+ + AL Sbjct: 630 KEIKKASKSTYVKEIVEPINAQKGNELSVGTLVENQMTRG--DMPLGTTAVEKRGIALEV 687 Query: 56 YPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRRTV---------RYDIDMI 101 +RC C C +CP AI E +G R + + Sbjct: 688 PQWISDRCTMCNECAFVCPHAAIRPFLANGEEMEEAPEGFIVREMRGKDGLLYRIQVSVE 747 Query: 102 KCIYCGLCQEACPV--DAIVEGPNFEFATETRQELY 135 C CGLC EACP A+ P E +++ Sbjct: 748 DCTGCGLCVEACPAKGKALEMKPY----GEQKEQAI 779 >gi|289435849|ref|YP_003465721.1| formate dehydrogenase, alpha subunit [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289172093|emb|CBH28639.1| formate dehydrogenase, alpha subunit [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 995 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 3/85 (3%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E+ + + + Y ++CI C C C + R + D Sbjct: 124 ERPYREKGYLNDFSHPFYRYDPDQCILCGRCVEACQQVQVNETLSIDWERSQPRVIWDDD 183 Query: 99 DMIK---CIYCGLCQEACPVDAIVE 120 C+ CGLC CP +A++E Sbjct: 184 KPANLSSCVSCGLCATVCPCNALME 208 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 9/69 (13%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCI 104 R N C C C+ + + +E R + Y D +CI Sbjct: 90 RILENHLLYCTVCDNNNGNCKVHNTTELLGVEQQERPYREKGYLNDFSHPFYRYDPDQCI 149 Query: 105 YCGLCQEAC 113 CG C EAC Sbjct: 150 LCGRCVEAC 158 >gi|149203818|ref|ZP_01880787.1| NAD-dependent formate dehydrogenase, alpha subunit [Roseovarius sp. TM1035] gi|149142935|gb|EDM30977.1| NAD-dependent formate dehydrogenase, alpha subunit [Roseovarius sp. TM1035] Length = 964 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 30/93 (32%), Gaps = 4/93 (4%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDID 99 + + + +CI C C C A+TI+ + D Sbjct: 166 PEWLPKDDSNPYFSYDPSKCIVCNRCVRACEEVQGTFALTIQGRGFDSRVSAGNADDDFL 225 Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 C+ CG C +ACP + E E T R Sbjct: 226 ASDCVSCGACVQACPTATLQEKSIIELGTPDRS 258 >gi|312868661|ref|ZP_07728854.1| dihydropyrimidine dehydrogenase [Lactobacillus oris PB013-T2-3] gi|311095775|gb|EFQ54026.1| dihydropyrimidine dehydrogenase [Lactobacillus oris PB013-T2-3] Length = 431 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 22/79 (27%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 ++CI C C C A + D K Sbjct: 326 VPTNQLDRDYKVYPKIDWDKCIGCGRCFISCQDGAH------QAMGWDDDKRLPTFDQSK 379 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV AI G Sbjct: 380 CVGCQLCALVCPVGAIKLG 398 >gi|326202175|ref|ZP_08192045.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium papyrosolvens DSM 2782] gi|325987970|gb|EGD48796.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium papyrosolvens DSM 2782] Length = 266 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 43/113 (38%), Gaps = 11/113 (9%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 + + T+ YP K + S G +C C C + CP A+ + Sbjct: 4 IVKKMIQHGTVTLQYPK-KNTKSTYITGIPEF-----DYSKCERCGKCISACPTGALVLV 57 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134 R ++ +CI+C C+EAC A+ NFE A ++R L Sbjct: 58 DKD-----GEREKLPAVNADECIFCRFCEEACTNQALKLSNNFELAQKSRDLL 105 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 23/56 (41%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + + + +T++ + T T + D KC CG C ACP A+V Sbjct: 3 NIVKKMIQHGTVTLQYPKKNTKSTYITGIPEFDYSKCERCGKCISACPTGALVLVD 58 >gi|16081547|ref|NP_393903.1| formate dehydrogenase related protein [Thermoplasma acidophilum DSM 1728] gi|10639595|emb|CAC11567.1| formate dehydrogenase related protein [Thermoplasma acidophilum] Length = 996 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 34/101 (33%), Gaps = 3/101 (2%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQE 111 Y +CI C C C + R V D I+ C+ CG C Sbjct: 157 FYVYDPSQCILCGRCVEACQDVQVNETLHIDWSLERPRVVWDDGSKINESSCVSCGHCVT 216 Query: 112 ACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEI 152 CPV+A++E A K +++ +E I Sbjct: 217 VCPVNALMEKTMIGNAGYLTDLDTETKNTMIDLVKAFEPII 257 >gi|28898284|ref|NP_797889.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus RIMD 2210633] gi|153837769|ref|ZP_01990436.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus AQ3810] gi|254229544|ref|ZP_04922957.1| Ferredoxin [Vibrio sp. Ex25] gi|260361866|ref|ZP_05774875.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus K5030] gi|260878621|ref|ZP_05890976.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus AN-5034] gi|260896153|ref|ZP_05904649.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus Peru-466] gi|262394268|ref|YP_003286122.1| iron-sulfur cluster-binding protein [Vibrio sp. Ex25] gi|28806501|dbj|BAC59773.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus RIMD 2210633] gi|149748874|gb|EDM59709.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus AQ3810] gi|151937917|gb|EDN56762.1| Ferredoxin [Vibrio sp. Ex25] gi|262337862|gb|ACY51657.1| iron-sulfur cluster-binding protein [Vibrio sp. Ex25] gi|308086193|gb|EFO35888.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus Peru-466] gi|308091268|gb|EFO40963.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus AN-5034] gi|308111393|gb|EFO48933.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus K5030] Length = 553 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 36/102 (35%), Gaps = 9/102 (8%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + C C C A+CP +A+ + ++ CI CGLC++ACP Sbjct: 415 CESKDCTLCMSCVAVCPTRALHTDG---------QSPSLKFVEQDCIQCGLCEKACPEKV 465 Query: 118 IVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 + P + E RQ+ E R + D Sbjct: 466 LTLTPRMNWVKEERQKAVVIHEEKAAECIRCHKPFAPQSMID 507 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 6/54 (11%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 C+ C CPA A++ E + R +I+ C G C ACP +AI Sbjct: 186 CERCVDACPAGALSSEGSDKTGH------RIEINPYLCQGVGTCATACPTEAIH 233 >gi|313631834|gb|EFR99003.1| putative formate dehydrogenase [Listeria seeligeri FSL N1-067] Length = 995 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 3/85 (3%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E+ + + + Y ++CI C C C + R + D Sbjct: 124 ERPYREKGYLNDFSHPFYRYDPDQCILCGRCVEACQQVQVNETLSIDWERSQPRVIWDDD 183 Query: 99 DMIK---CIYCGLCQEACPVDAIVE 120 C+ CGLC CP +A++E Sbjct: 184 KPANLSSCVSCGLCATVCPCNALME 208 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 9/69 (13%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCI 104 R N C C C+ + + +E R + Y D +CI Sbjct: 90 RILENHLLYCTVCDNNNGNCKVHNTTELLGVEQQERPYREKGYLNDFSHPFYRYDPDQCI 149 Query: 105 YCGLCQEAC 113 CG C EAC Sbjct: 150 LCGRCVEAC 158 >gi|159042417|ref|YP_001541669.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Caldivirga maquilingensis IC-167] gi|157921252|gb|ABW02679.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Caldivirga maquilingensis IC-167] Length = 107 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGP-RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 ++ C C++C CP AI P +G + ++ ++++ C CG+C CPV A Sbjct: 38 DQDACTRCRICWLYCPEPAILELDKPYVAKNGRKYSITFEVNYDYCKGCGICANECPVKA 97 Query: 118 IVEGPN 123 I P Sbjct: 98 IKMVPE 103 >gi|67474180|ref|XP_652839.1| Fe-hydrogenase [Entamoeba histolytica HM-1:IMSS] gi|27652439|gb|AAO17820.1| putative long iron-dependent hydrogenase 2 [Entamoeba histolytica] gi|56469743|gb|EAL47464.1| Fe-hydrogenase, putative [Entamoeba histolytica HM-1:IMSS] Length = 504 Score = 52.8 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 26/66 (39%), Gaps = 6/66 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV------RYDIDMIKCIYCGLCQEA 112 + CI C C CP AI +S P + ID KCI CG C A Sbjct: 147 NQNNCIKCGRCYKFCPYGAIISKSVPCVKACPCGAMLDSPEGVKTIDFEKCINCGGCMRA 206 Query: 113 CPVDAI 118 CP AI Sbjct: 207 CPFGAI 212 Score = 40.5 bits (93), Expect = 0.090, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 6/65 (9%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY------DIDMIKCIYCGLCQEAC 113 ++ C C S P + ++ + + I+ CI CG C + C Sbjct: 102 QKGCNKCHFNGYFVTQACEGCTSRPCSVNCPKKCISFGEDGRAVINQNNCIKCGRCYKFC 161 Query: 114 PVDAI 118 P AI Sbjct: 162 PYGAI 166 >gi|313835282|gb|EFS72996.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL037PA2] gi|314928232|gb|EFS92063.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL044PA1] gi|314970063|gb|EFT14161.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL037PA3] gi|328905958|gb|EGG25734.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium sp. P08] Length = 605 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 9/62 (14%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C C CP AI + RY+ + KCI C C + CPV AI Sbjct: 514 NCFECDGCYGSCPEDAI---------IKLGKGHRYEFNYDKCIGCATCFDQCPVHAIEMI 564 Query: 122 PN 123 P Sbjct: 565 PE 566 >gi|325479256|gb|EGC82352.1| pyruvate synthase [Anaerococcus prevotii ACS-065-V-Col13] Length = 1175 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 28/117 (23%), Positives = 40/117 (34%), Gaps = 20/117 (17%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESG 83 FE G+T RG AL + CI C C +CP A Sbjct: 665 FESGTTQYEKRG-IALNVPEWQLDNCIQCNQCSFVCPHAVIRPFLVTEDEKANAPEGFDT 723 Query: 84 PRCHDGTRRTVRYDID--MIKCIYCGLCQEACPVD--AIVEGPNFEFATETRQELYY 136 + + I + C CG C + CP A++ P FE E ++ +Y Sbjct: 724 KKAIGKGMEGYEFRIQVSPLDCTGCGNCADVCPAPQKALLMKP-FEEQVEKEKDNWY 779 >gi|33596549|ref|NP_884192.1| putative iron-sulfur binding protein [Bordetella parapertussis 12822] gi|33566318|emb|CAE37231.1| putative iron-sulfur binding protein [Bordetella parapertussis] Length = 705 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 9/79 (11%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C C + CP+ A+ ++ + + C+ CGLC CP +AI Sbjct: 572 DSDACTLCMSCVSACPSNALLDNP---------QSPQLRMVEKNCVQCGLCATTCPENAI 622 Query: 119 VEGPNFEFATETRQELYYD 137 P A R+ + + Sbjct: 623 TLVPRLLLAPRRREAVVLN 641 Score = 40.5 bits (93), Expect = 0.071, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 9/55 (16%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C+ C IC A+AI+ +S R ++ C+ CG C CP A+ Sbjct: 323 VGCRACIDICSARAISSDS---------HHQRIVVNPNLCVGCGACTTVCPSGAL 368 Score = 34.3 bits (77), Expect = 5.3, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 13/30 (43%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 ID+ C C C ACP AI + A Sbjct: 200 IDLDLCTRCNACISACPDGAIGLDYQVDTA 229 >gi|148655365|ref|YP_001275570.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [Roseiflexus sp. RS-1] gi|148567475|gb|ABQ89620.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Roseiflexus sp. RS-1] Length = 1192 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 29/104 (27%), Gaps = 24/104 (23%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE----------------SGPRCHDG 89 + AL + CI C C +CP I + + R + Sbjct: 673 WEKRTIALEVPVWEPDICIQCGKCAYVCPHAVIRTKVYEPALLEGAPETFLSAEARFKEF 732 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPV--------DAIVEGPNFE 125 I C CGLC E CP AI P E Sbjct: 733 PGYKYTLAISSEDCTGCGLCVEVCPAKDKRQVGRKAINMKPLVE 776 >gi|94264814|ref|ZP_01288591.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase:4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium MLMS-1] gi|93454753|gb|EAT05011.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase:4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium MLMS-1] Length = 938 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 6/63 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E CI C LC+++CP QAI I + + C CG+C CPV AI Sbjct: 864 DKETCIGCGLCQSLCPYQAIRIAKDDNNK------RKAETITASCKGCGICAAHCPVFAI 917 Query: 119 VEG 121 G Sbjct: 918 SMG 920 Score = 41.2 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 29/94 (30%), Gaps = 12/94 (12%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP-------RCHDGTRRTVRY 96 +F +R ++C AC +C CP + + Y Sbjct: 24 PGKFSARLRVRPRYIDADKCTACGMCTQYCPRHLVDDYNEGLALTRPIHIDYPQAVPASY 83 Query: 97 DIDMIKCIY-----CGLCQEACPVDAIVEGPNFE 125 ID C++ C +C AC AI E Sbjct: 84 FIDPEACLHLKHGTCKICVSACQTRAIDFAQEAE 117 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 12/31 (38%), Positives = 14/31 (45%) Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +D CI CGLCQ CP AI + Sbjct: 858 PTVSTVDKETCIGCGLCQSLCPYQAIRIAKD 888 >gi|307266765|ref|ZP_07548290.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter wiegelii Rt8.B1] gi|306918207|gb|EFN48456.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter wiegelii Rt8.B1] Length = 1170 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 40/123 (32%), Gaps = 30/123 (24%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG L + CI C C +CP +A + + Sbjct: 674 RGIAVLIPEWQ-IDNCIQCNQCSYVCPHAVIRPFLLTEEEMKKAPSTFKLKKAIGRGLEG 732 Query: 94 VRYDID--MIKCIYCGLCQEAC--PVDAIVEGP----------NFEFATE-TRQELYYDK 138 + Y I + C CG C + C P A++ P N+E+A ++ DK Sbjct: 733 LWYRIQVSPLDCTGCGNCADVCPAPTKALIMKPAEEQIEKEARNWEYAVTLDVKDNLVDK 792 Query: 139 ERL 141 L Sbjct: 793 ATL 795 >gi|296158465|ref|ZP_06841296.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia sp. Ch1-1] gi|295891409|gb|EFG71196.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia sp. Ch1-1] Length = 413 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 11/68 (16%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 LR++ E CI C CE CP AIT + Y + C C C Sbjct: 8 EVLRQHLIDPEICIRCNTCEETCPVDAITHDDN-----------NYVVKADICNGCMACV 56 Query: 111 EACPVDAI 118 CP AI Sbjct: 57 PPCPTGAI 64 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 14/26 (53%), Positives = 15/26 (57%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPN 123 ID CI C C+E CPVDAI N Sbjct: 15 IDPEICIRCNTCEETCPVDAITHDDN 40 >gi|33601102|ref|NP_888662.1| putative iron-sulfur binding protein [Bordetella bronchiseptica RB50] gi|33575537|emb|CAE32615.1| putative iron-sulfur binding protein [Bordetella bronchiseptica RB50] Length = 705 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 9/79 (11%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C C + CP+ A+ ++ + + C+ CGLC CP +AI Sbjct: 572 DSDACTLCMSCVSACPSNALLDNP---------QSPQLRMVEKNCVQCGLCATTCPENAI 622 Query: 119 VEGPNFEFATETRQELYYD 137 P A R+ + + Sbjct: 623 TLVPRLLLAPRRREAVVLN 641 Score = 40.5 bits (93), Expect = 0.072, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 9/55 (16%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C+ C IC A+AI+ +S R ++ C+ CG C CP A+ Sbjct: 323 VGCRACIDICSARAISSDS---------HHQRIVVNPNLCVGCGACTTVCPSGAL 368 Score = 34.3 bits (77), Expect = 5.3, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 13/30 (43%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 ID+ C C C ACP AI + A Sbjct: 200 IDLDLCTRCNACISACPDGAIGLDYQVDTA 229 >gi|328905957|gb|EGG25733.1| pyruvate-flavodoxin oxidoreductase [Propionibacterium sp. P08] Length = 1206 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 22/81 (27%), Gaps = 16/81 (19%) Query: 58 NGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTVRYDIDMI 101 CI C C +CP I + I Sbjct: 695 WEPNACIQCGNCAFVCPHGVIRAKYYPQSQLEGAPESFQSAELNAAGLPESCYTLQIVPD 754 Query: 102 KCIYCGLCQEACPVDAIVEGP 122 +C CGLC EACP I E Sbjct: 755 QCTGCGLCVEACPAHPIGEPD 775 >gi|313835283|gb|EFS72997.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL037PA2] gi|314928233|gb|EFS92064.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL044PA1] gi|314970064|gb|EFT14162.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL037PA3] Length = 1204 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 22/81 (27%), Gaps = 16/81 (19%) Query: 58 NGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTVRYDIDMI 101 CI C C +CP I + I Sbjct: 693 WEPNACIQCGNCAFVCPHGVIRAKYYPQSQLEGAPESFQSAELNAAGLPESCYTLQIVPD 752 Query: 102 KCIYCGLCQEACPVDAIVEGP 122 +C CGLC EACP I E Sbjct: 753 QCTGCGLCVEACPAHPIGEPD 773 >gi|322437052|ref|YP_004219264.1| formate dehydrogenase, alpha subunit [Acidobacterium sp. MP5ACTX9] gi|321164779|gb|ADW70484.1| formate dehydrogenase, alpha subunit [Acidobacterium sp. MP5ACTX9] Length = 1008 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 3/93 (3%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---Y 96 + + + + Y +CI C C C + + R + Sbjct: 143 RPYMEKPYEKDMSNPFYRYDPNQCILCGRCVEACQSVQVNETLTINWESEHPRVLWDGGE 202 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 I+ C+ CG C CP +A++E A Sbjct: 203 KIEGSSCVSCGHCVTVCPCNALMEKTMIGHAGY 235 Score = 38.5 bits (88), Expect = 0.28, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 22/71 (30%), Gaps = 13/71 (18%) Query: 54 RRYPNGEERCIACKL----CEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C QA P D + RYD + Sbjct: 108 RILQNHMLYCTVCDNNNQNCTVHNATADLDVKHQARPYMEKPYEKDMSNPFYRYD--PNQ 165 Query: 103 CIYCGLCQEAC 113 CI CG C EAC Sbjct: 166 CILCGRCVEAC 176 >gi|288926084|ref|ZP_06420012.1| NADH-ubiquinone oxidoreductase, NQO9 subunit (NQO9) [Prevotella buccae D17] gi|288337124|gb|EFC75482.1| NADH-ubiquinone oxidoreductase, NQO9 subunit (NQO9) [Prevotella buccae D17] Length = 94 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 29/63 (46%) Query: 78 ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 + + P R+ + Y D+ C++C LC AC DAI +FE A R +L Sbjct: 4 HEMVADPETGKKKRQLIDYQYDLGDCMFCQLCVNACNFDAIEFTNDFEQAVFDRSKLVLH 63 Query: 138 KER 140 ++ Sbjct: 64 LDK 66 >gi|260494607|ref|ZP_05814737.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Fusobacterium sp. 3_1_33] gi|260197769|gb|EEW95286.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Fusobacterium sp. 3_1_33] Length = 657 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 40/112 (35%), Gaps = 18/112 (16%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA--------------ITIESG 83 FE G+ + RG N ++CI C C +CP A + Sbjct: 144 FENGTAAFEKRGVAVDVPIWN-VDKCIQCNQCSYVCPHAAIRPFLINEKELKAAPMPFAT 202 Query: 84 PRCHDGTRRTVRYDIDMI--KCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 + + Y I + C+ CG C CP +A+ P E + E ++ Sbjct: 203 KKAAGKGLDGLVYRIQVSALDCVGCGSCANVCPANALDMRPIAE-SLEAHED 253 >gi|258406380|ref|YP_003199122.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfohalobium retbaense DSM 5692] gi|257798607|gb|ACV69544.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfohalobium retbaense DSM 5692] Length = 807 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 35/113 (30%), Gaps = 10/113 (8%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPR---FRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79 L + K T E S + FR + P C+AC C A+CP + Sbjct: 209 ALGTLVQRKVTAFTQTEVTSITKHEGNFRARLSSAAQPVDPAACVACGACSAVCPEFGHS 268 Query: 80 IESGP-------RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 + Y I C CG C+E CP AI E Sbjct: 269 GFNEGLFARKAIDKDAPRAVPDAYTILDDVCTRCGACEEVCPAGAIDLKAEPE 321 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 11/59 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 E CI C++CE +CP AI + D C CGLC ACP A Sbjct: 596 NRETCIQCRMCETVCPHGAIRLTEEGMVAD-----------PAFCQACGLCAAACPTHA 643 Score = 37.4 bits (85), Expect = 0.75, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 22/50 (44%), Gaps = 2/50 (4%) Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPVDAIVEGPN 123 +A + + P H G + ++ + + CI C +C+ CP AI Sbjct: 571 KAAAMTALPALHFGQKTPPKHSSHLNRETCIQCRMCETVCPHGAIRLTEE 620 >gi|220935361|ref|YP_002514260.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thioalkalivibrio sp. HL-EbGR7] gi|219996671|gb|ACL73273.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thioalkalivibrio sp. HL-EbGR7] Length = 648 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 19/59 (32%), Gaps = 4/59 (6%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C CP A+ G Y KC+ C +C E CP I Sbjct: 590 MCFECDNCVIYCPQTAVYRVPKKEAATGRYVATDY----AKCVGCHICAEVCPTGYIDM 644 >gi|207109994|ref|ZP_03244156.1| NADH dehydrogenase subunit I [Helicobacter pylori HPKX_438_CA4C1] Length = 68 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 21/45 (46%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFR 48 F+ + + L ++ FF TI+YP E+ SPR+R Sbjct: 22 FKDTIKTSLGLDLFKGLGLTIKEFFSPSVTIHYPMEQLPLSPRYR 66 >gi|54309051|ref|YP_130071.1| iron-sulfur cluster-binding protein [Photobacterium profundum SS9] gi|46913483|emb|CAG20269.1| hypothetical iron-sulfur cluster-binding protein [Photobacterium profundum SS9] Length = 581 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 9/75 (12%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C C C A+CP +A G + CI CGLC++ACP + Sbjct: 447 DDCTLCMSCVAVCPTRAFHAVGGRPG---------LQLIEEDCIQCGLCEKACPEKVLTL 497 Query: 121 GPNFEFATETRQELY 135 P F + ETR+ Sbjct: 498 KPGFNWNAETRKAAV 512 Score = 35.5 bits (80), Expect = 2.6, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 11/53 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C CPA A++ +I+ C G C ACP +AI Sbjct: 210 CNRCVDACPAGALSSIGHA-----------IEINPYLCQGVGTCATACPTEAI 251 >gi|296242128|ref|YP_003649615.1| pyruvate ferredoxin oxidoreductase subunit delta [Thermosphaera aggregans DSM 11486] gi|296094712|gb|ADG90663.1| pyruvate ferredoxin oxidoreductase, delta subunit [Thermosphaera aggregans DSM 11486] Length = 93 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 11/67 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +C C LC CP AI + ++ C CG+C CPV AI Sbjct: 36 DHNKCTKCMLCWLFCPDMAIVWDGEK-----------IQVNYDYCKGCGICAHECPVKAI 84 Query: 119 VEGPNFE 125 P FE Sbjct: 85 SMIPEFE 91 >gi|94264130|ref|ZP_01287928.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase:4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium MLMS-1] gi|93455466|gb|EAT05660.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase:4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium MLMS-1] Length = 938 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 6/63 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E CI C LC+++CP QAI I + + C CG+C CPV AI Sbjct: 864 DKETCIGCGLCQSLCPYQAIRIAKDDNNK------RKAETITASCKGCGICAAHCPVFAI 917 Query: 119 VEG 121 G Sbjct: 918 SMG 920 Score = 41.2 bits (95), Expect = 0.049, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 29/94 (30%), Gaps = 12/94 (12%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP-------RCHDGTRRTVRY 96 +F +R ++C AC +C CP + + Y Sbjct: 24 PGKFSARLRVRPRYIDADKCTACGMCTQYCPRHLVDDYNEGLALTRPIHIDYPQAVPASY 83 Query: 97 DIDMIKCIY-----CGLCQEACPVDAIVEGPNFE 125 ID C++ C +C AC AI E Sbjct: 84 FIDPEACLHLKHGTCKICVSACQTRAIDFAQEAE 117 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 12/31 (38%), Positives = 14/31 (45%) Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +D CI CGLCQ CP AI + Sbjct: 858 PTVSTVDKETCIGCGLCQSLCPYQAIRIAKD 888 >gi|90418463|ref|ZP_01226375.1| putative 4Fe-4S ferredoxin [Aurantimonas manganoxydans SI85-9A1] gi|90338135|gb|EAS51786.1| putative 4Fe-4S ferredoxin [Aurantimonas manganoxydans SI85-9A1] Length = 680 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 9/82 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +ERC C C + CPA A+ G C+ CG+C CP AI Sbjct: 518 DKERCTLCMACVSACPADALRDTPGKPEL---------RFVEAACVQCGICAATCPETAI 568 Query: 119 VEGPNFEFATETRQELYYDKER 140 P + A Q + +++ Sbjct: 569 TLDPRYNLAPTVMQPVTLNEDE 590 Score = 34.7 bits (78), Expect = 3.9, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 12/50 (24%) Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E + ID C CG C CP A+ Sbjct: 277 HERSKKTGCTKCIDNCPPSAISPDGDNILIDTAICGGCGNCAAHCPTGAV 326 >gi|50121206|ref|YP_050373.1| electron transport complex protein RnfC [Pectobacterium atrosepticum SCRI1043] gi|81693263|sp|Q6D4W2|RNFC_ERWCT RecName: Full=Electron transport complex protein rnfC; AltName: Full=Nitrogen fixation protein rnfC gi|49611732|emb|CAG75181.1| electron transport complex protein [Pectobacterium atrosepticum SCRI1043] Length = 693 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 33/103 (32%), Gaps = 12/103 (11%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ CI C C CPA + + G D + CI CG C CP Sbjct: 373 EEQSCIRCSKCADACPAG-LLPQQLYWFSRGQEHEKARDHHLFDCIECGACAYVCP---- 427 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161 N RQE K + + + + + D+ Sbjct: 428 ---SNIPLVQYYRQE----KAEIRAIDEDAQRAALAKVRFDAK 463 >gi|320156338|ref|YP_004188717.1| iron-sulfur cluster-binding protein [Vibrio vulnificus MO6-24/O] gi|319931650|gb|ADV86514.1| iron-sulfur cluster-binding protein [Vibrio vulnificus MO6-24/O] Length = 552 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 36/104 (34%), Gaps = 12/104 (11%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T P E T A+ G C C C A+CP +A+ + Sbjct: 391 ATSRVPVENTVTLSSHAPYGAVSCATTG---CTLCMSCVAVCPTRALHTDGE-------- 439 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 + C+ CGLC +ACP + P + E+RQ Sbjct: 440 -SPSLQFVEQDCVQCGLCTKACPEQVLTLTPRMNWDKESRQAAV 482 Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 6/54 (11%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 C+ C CPA A+T + + +I+ C G C +CP +AI Sbjct: 185 CERCVDACPAGALTSQGSDKTGH------HIEINPYLCQGVGTCATSCPTEAIH 232 >gi|183231113|ref|XP_656317.2| dihydropyrimidine dehydrogenase [Entamoeba histolytica HM-1:IMSS] gi|169802613|gb|EAL50934.2| dihydropyrimidine dehydrogenase, putative [Entamoeba histolytica HM-1:IMSS] Length = 901 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 32/86 (37%), Gaps = 8/86 (9%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G R + + CI C C C + T + RY +D KCI C L Sbjct: 817 GPEKWRVNAHIKNNCIGCGSCALSCRDNSTTAI--------VKDGNRYRVDDEKCIGCAL 868 Query: 109 CQEACPVDAIVEGPNFEFATETRQEL 134 C CPV+AI T +EL Sbjct: 869 CSSVCPVNAIEYVKVKGLNEMTPEEL 894 >gi|91784376|ref|YP_559582.1| benzoyl-CoA oxygenase, component A [Burkholderia xenovorans LB400] gi|91688330|gb|ABE31530.1| benzoyl-CoA oxygenase, component A [Burkholderia xenovorans LB400] Length = 413 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 11/68 (16%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 LR++ E CI C CE CP AIT + Y + C C C Sbjct: 8 EVLRQHLIDPEICIRCNTCEETCPVDAITHDDN-----------NYVVKADICNGCMACV 56 Query: 111 EACPVDAI 118 CP AI Sbjct: 57 PPCPTGAI 64 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 14/26 (53%), Positives = 15/26 (57%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPN 123 ID CI C C+E CPVDAI N Sbjct: 15 IDPEICIRCNTCEETCPVDAITHDDN 40 >gi|85860895|ref|YP_463097.1| glutamate synthase (NADPH) [Syntrophus aciditrophicus SB] gi|85723986|gb|ABC78929.1| glutamate synthase (NADPH) [Syntrophus aciditrophicus SB] Length = 777 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 17/107 (15%), Positives = 27/107 (25%), Gaps = 6/107 (5%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + + P E+ + C +C C + Sbjct: 673 IRGRKETMGQL------QPMPAERVKMAYFEPWLPENADVTAWSRVCASCGSCRDCGLCE 726 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 AI ++ D + Y +CI CG C CP N Sbjct: 727 AICPQNAIFRLDKSSGAFEYRSRAERCIGCGFCAGVCPTGVWRLVEN 773 >gi|289523836|ref|ZP_06440690.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502926|gb|EFD24090.1| protein HymB [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 579 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 33/77 (42%), Gaps = 10/77 (12%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 L + CI C C +CPA+AI+ E + +D +KC+ CG C Sbjct: 513 QGLFVANINQGSCIGCGQCAKVCPAKAISGE----------VRKPHVVDALKCVGCGQCM 562 Query: 111 EACPVDAIVEGPNFEFA 127 + CP ++I E A Sbjct: 563 DICPTNSITSSRRGEIA 579 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 14/47 (29%), Positives = 16/47 (34%), Gaps = 6/47 (12%) Query: 78 ITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEACPVDAI 118 E DG R I+ CI CG C + CP AI Sbjct: 494 YFHEEYEEHVDGYCRAGVCQGLFVANINQGSCIGCGQCAKVCPAKAI 540 >gi|89096782|ref|ZP_01169674.1| formate dehydrogenase chain A [Bacillus sp. NRRL B-14911] gi|89088797|gb|EAR67906.1| formate dehydrogenase chain A [Bacillus sp. NRRL B-14911] Length = 990 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 3/84 (3%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---Y 96 + S + + + Y ++CI C C C + G R + Sbjct: 125 RPHRSKGYEVDMSHPFYRYDPDQCILCGRCVETCQDLQVNETLTIDWETGQPRVLWDGGK 184 Query: 97 DIDMIKCIYCGLCQEACPVDAIVE 120 I+ C+ CG C CP +A++E Sbjct: 185 SINESSCVSCGQCVSVCPCNALME 208 >gi|325846909|ref|ZP_08169766.1| pyruvate synthase [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481151|gb|EGC84195.1| pyruvate synthase [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 1177 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 40/133 (30%), Gaps = 31/133 (23%) Query: 24 LRYFFKA---------KTTINYPFEKGS----TSPRFRGEHALRRYPNGEERCIACKLCE 70 ++ + + P++ G TS + AL + CI C C Sbjct: 639 IKNMVRPIINLKEDDLPVSTYLPYDDGQYMAGTSRYEKRGIALFVPEWNIDNCIQCNQCS 698 Query: 71 AICPAQAITI-----ESGPRCHDGTR-----------RTVRYDIDMIKCIYCGLCQEAC- 113 ICP I E + +G R + C+ CG C + C Sbjct: 699 YICPHATIRPFLLDEEQKAKAPEGFETKKAIGKGLEGYEFRIQVSPYDCMGCGNCVDVCP 758 Query: 114 -PVDAIVEGPNFE 125 P A+ P E Sbjct: 759 APKKALAMKPIDE 771 >gi|323478518|gb|ADX83756.1| formate dehydrogenase, alpha subunit [Sulfolobus islandicus HVE10/4] Length = 979 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQE 111 Y +CI C C C A+ R V + I C+ CG C Sbjct: 139 FYVYDPSQCILCGRCVEACQDFAVNEVIWINWDLNPPRVVWDNGNPIGNSSCVNCGTCVT 198 Query: 112 ACPVDAIVE 120 CPV+A++E Sbjct: 199 VCPVNALME 207 Score = 40.5 bits (93), Expect = 0.073, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 27/80 (33%), Gaps = 7/80 (8%) Query: 48 RGEHALRRYPNGEERCIACKL-------CEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100 R R + C C+ E++ + + R + Y D Sbjct: 85 RKTAISRILRYHKLYCSMCENNNGDCVLHESVIKLNINSQKYIERPYQVDDSGPFYVYDP 144 Query: 101 IKCIYCGLCQEACPVDAIVE 120 +CI CG C EAC A+ E Sbjct: 145 SQCILCGRCVEACQDFAVNE 164 >gi|323475906|gb|ADX86512.1| formate dehydrogenase, alpha subunit [Sulfolobus islandicus REY15A] Length = 979 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQE 111 Y +CI C C C A+ R V + I C+ CG C Sbjct: 139 FYVYDPSQCILCGRCVEACQDFAVNEVIWINWDLNPPRVVWDNGNPIGNSSCVNCGTCVT 198 Query: 112 ACPVDAIVE 120 CPV+A++E Sbjct: 199 VCPVNALME 207 Score = 40.5 bits (93), Expect = 0.073, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 27/80 (33%), Gaps = 7/80 (8%) Query: 48 RGEHALRRYPNGEERCIACKL-------CEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100 R R + C C+ E++ + + R + Y D Sbjct: 85 RKTAISRILRYHKLYCSMCENNNGDCVLHESVIKLNINSQKYIERPYQVDDSGPFYVYDP 144 Query: 101 IKCIYCGLCQEACPVDAIVE 120 +CI CG C EAC A+ E Sbjct: 145 SQCILCGRCVEACQDFAVNE 164 >gi|256544397|ref|ZP_05471772.1| pyruvate-ferredoxin oxidoreductase [Anaerococcus vaginalis ATCC 51170] gi|256399929|gb|EEU13531.1| pyruvate-ferredoxin oxidoreductase [Anaerococcus vaginalis ATCC 51170] Length = 1177 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 40/133 (30%), Gaps = 31/133 (23%) Query: 24 LRYFFKA---------KTTINYPFEKGS----TSPRFRGEHALRRYPNGEERCIACKLCE 70 ++ + + P++ G TS + AL + CI C C Sbjct: 639 IKNMVRPIINLEEDDLPVSTYLPYDDGQYMAGTSRYEKRGIALFVPEWNIDNCIQCNQCS 698 Query: 71 AICPAQAITI-----ESGPRCHDGTR-----------RTVRYDIDMIKCIYCGLCQEAC- 113 ICP I E + +G R + C+ CG C + C Sbjct: 699 YICPHATIRPFLLDEEQKAKAPEGFETKKAIGKGLEGYEFRIQVSPYDCMGCGNCVDVCP 758 Query: 114 -PVDAIVEGPNFE 125 P A+ P E Sbjct: 759 APKKALAMKPIDE 771 >gi|212696683|ref|ZP_03304811.1| hypothetical protein ANHYDRO_01224 [Anaerococcus hydrogenalis DSM 7454] gi|212676414|gb|EEB36021.1| hypothetical protein ANHYDRO_01224 [Anaerococcus hydrogenalis DSM 7454] Length = 1177 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 40/133 (30%), Gaps = 31/133 (23%) Query: 24 LRYFFKA---------KTTINYPFEKGS----TSPRFRGEHALRRYPNGEERCIACKLCE 70 ++ + + P++ G TS + AL + CI C C Sbjct: 639 IKNMVRPIINLKEDDLPVSTYLPYDDGQYMAGTSRYEKRGIALFVPEWNIDNCIQCNQCS 698 Query: 71 AICPAQAITI-----ESGPRCHDGTR-----------RTVRYDIDMIKCIYCGLCQEAC- 113 ICP I E + +G R + C+ CG C + C Sbjct: 699 YICPHATIRPFLLDEEQKAKAPEGFETKKAIGKGLEGYEFRIQVSPYDCMGCGNCVDVCP 758 Query: 114 -PVDAIVEGPNFE 125 P A+ P E Sbjct: 759 APKKALAMKPIDE 771 >gi|295111644|emb|CBL28394.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [Synergistetes bacterium SGP1] Length = 1201 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 40/117 (34%), Gaps = 26/117 (22%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITI------------------ESGPRCHDG 89 RG NG E+CI C C +CP AI + + Sbjct: 682 RGVAVNVPEWNG-EKCIQCNQCSMVCPHAAIRPFLLDAAEQEAAPKDFGAVDPKAKALKE 740 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP------NFEFATETRQELYYDKER 140 + +D + C+ CG C + CPV A+ P + T + DK++ Sbjct: 741 AGYRYKIQVDTLDCLGCGNCADICPVKALEMKPTASQEGEIDNWTYAVEG-VADKDK 796 >gi|291538469|emb|CBL11580.1| Iron only hydrogenase large subunit, C-terminal domain [Roseburia intestinalis XB6B4] Length = 482 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110 +C C C CP AI P + Y+ ID KCI CG C Sbjct: 124 HIDPSKCKECGRCAQACPYNAIAHLKRPCKFSCPVNAITYNEYGISVIDKEKCIRCGKCI 183 Query: 111 EACPVDAI 118 +CP AI Sbjct: 184 HSCPFGAI 191 >gi|169837543|ref|ZP_02870731.1| electron transport complex protein RnfC [candidate division TM7 single-cell isolate TM7a] Length = 501 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 33/103 (32%), Gaps = 6/103 (5%) Query: 16 FVGAFFLCL--RYFFKAKT--TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71 V + + F T + + T G L + CI+C C Sbjct: 137 IVRELKITNEDKVIFGGPMMGTEIF-DSRVPTVKGTSGILFLDTEEIERKSCISCGYCVE 195 Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 CP + E +G + ++ CI CG C+ CP Sbjct: 196 ACPMNLMPFEFADYYKNG-KYEKMATANIQNCIECGACEFVCP 237 Score = 37.8 bits (86), Expect = 0.47, Method: Composition-based stats. Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 4/33 (12%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 +I+ CI CG C EACP + P FEFA Sbjct: 181 EIERKSCISCGYCVEACP---MNLMP-FEFADY 209 >gi|150015217|ref|YP_001307471.1| ferredoxin hydrogenase [Clostridium beijerinckii NCIMB 8052] gi|149901682|gb|ABR32515.1| Ferredoxin hydrogenase [Clostridium beijerinckii NCIMB 8052] Length = 496 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 7/69 (10%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-------DIDMIKCIYCGLC 109 ++C C +C+ CP A+ + P + Y +I KC+ CG C Sbjct: 135 YIDPDKCKECGMCKKACPYDAVAEDMRPCKKSCPTGALSYNAEDLSAEITESKCVNCGAC 194 Query: 110 QEACPVDAI 118 ACP AI Sbjct: 195 MSACPFGAI 203 Score = 37.4 bits (85), Expect = 0.63, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 13/60 (21%) Query: 63 CIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C++ C AIT G R ID KC CG+C++ACP DA+ E Sbjct: 110 CRNCIAHKCQSACNFGAITYVDG-----------RAYIDPDKCKECGMCKKACPYDAVAE 158 >gi|323498950|ref|ZP_08103933.1| formate dehydrogenase, alpha subunit [Vibrio sinaloensis DSM 21326] gi|323316062|gb|EGA69090.1| formate dehydrogenase, alpha subunit [Vibrio sinaloensis DSM 21326] Length = 1402 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 14/79 (17%) Query: 59 GEERCIACKLCEAICPAQAITIE--------------SGPRCHDGTRRTVRYDIDMIKCI 104 RCI+C C C QA+ R H G+ + R + C+ Sbjct: 631 DANRCISCGQCIQACSEQAVHGILNFIHDQHGRPALRPDDRPHFGSSKNGRLLMGDSNCV 690 Query: 105 YCGLCQEACPVDAIVEGPN 123 CG C +ACP A+V+ + Sbjct: 691 QCGACVQACPTGAMVDSRD 709 Score = 34.7 bits (78), Expect = 3.9, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 21/72 (29%), Gaps = 9/72 (12%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P ++ G + G+ C+ C C CP A+ Sbjct: 668 PDDRPHFGSSKNGRLLM-----GDSNCVQCGACVQACPTGAMVDSRDRSQGREEVLHQVD 722 Query: 97 DIDMIKCIYCGL 108 I C YCG+ Sbjct: 723 TI----CTYCGV 730 >gi|282897271|ref|ZP_06305273.1| ferredoxin (flavodoxin) oxidoreductase [Raphidiopsis brookii D9] gi|281197923|gb|EFA72817.1| ferredoxin (flavodoxin) oxidoreductase [Raphidiopsis brookii D9] Length = 1201 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 24/134 (17%), Positives = 37/134 (27%), Gaps = 30/134 (22%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPR 85 TS + A + CI C C +CP A Sbjct: 679 PTGTSKWEKRNIAQEIPVWDPQVCIQCGKCVMVCPHSVIRSKVYQPEELVNAPPTFKTAN 738 Query: 86 CHDGTRRTVRYDID--MIKCIYCGLCQEACP--------VDAIVEGPNFEFATETRQ--E 133 + +++ I C C LC + CP AI + R+ + Sbjct: 739 AKEHDWHELKFTIQVAAEDCTGCALCVDVCPAKNKAEPKKKAINMVQQRPLREQERENWD 798 Query: 134 LYYDKERLLNNGDR 147 + + L N DR Sbjct: 799 FFLN----LPNPDR 808 >gi|229585934|ref|YP_002844436.1| formate dehydrogenase, alpha subunit [Sulfolobus islandicus M.16.27] gi|228020984|gb|ACP56391.1| formate dehydrogenase, alpha subunit [Sulfolobus islandicus M.16.27] Length = 979 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQE 111 Y +CI C C C A+ R V + I C+ CG C Sbjct: 139 FYVYDPSQCILCGRCVEACQDFAVNEVIWINWDLNPPRVVWDNGNPIGNSSCVNCGTCVT 198 Query: 112 ACPVDAIVE 120 CPV+A++E Sbjct: 199 VCPVNALME 207 Score = 40.5 bits (93), Expect = 0.089, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 7/86 (8%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKL-------CEAICPAQAITIESGPRCHDGTRRTV 94 S R R + C C+ E++ + + + + Sbjct: 79 KRSMEARKTAISRILRYHKLYCSMCENNNGDCVLHESVIKLNINSQKYIEKPYQVDDSGP 138 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVE 120 Y D +CI CG C EAC A+ E Sbjct: 139 FYVYDPSQCILCGRCVEACQDFAVNE 164 >gi|117164510|emb|CAJ88056.1| putative ferredoxin reductase [Streptomyces ambofaciens ATCC 23877] Length = 510 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 5/72 (6%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C + C ++CP I + T ID CI CG C +ACPVDAI Sbjct: 7 QTCCSDATCVSVCPVNCIRPTPEEQA---FGSTEMLHIDPKTCIDCGACADACPVDAIF- 62 Query: 121 GPNFEFATETRQ 132 P R+ Sbjct: 63 -PVESLTAGQRE 73 >gi|325967871|ref|YP_004244063.1| pyruvate:ferredoxin oxidoreductase (POR), delta subunit [Vulcanisaeta moutnovskia 768-28] gi|323707074|gb|ADY00561.1| Pyruvate:ferredoxin oxidoreductase (POR), delta subunit [Vulcanisaeta moutnovskia 768-28] Length = 106 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 1/66 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRC-HDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 ++ CI C++C CP AI P G + + Y+ID C CG+C CPV A Sbjct: 38 DQDACIRCRICWMYCPEPAILELKKPYTTKSGKKYDLTYEIDYDHCKGCGICAHECPVKA 97 Query: 118 IVEGPN 123 I Sbjct: 98 IKMVSE 103 >gi|167386568|ref|XP_001737815.1| dihydropyrimidine dehydrogenase [Entamoeba dispar SAW760] gi|165899267|gb|EDR25906.1| dihydropyrimidine dehydrogenase, putative [Entamoeba dispar SAW760] Length = 901 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 32/86 (37%), Gaps = 8/86 (9%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G R + + CI C C C + T + RY +D KCI C L Sbjct: 817 GPEKWRVNAHIKNNCIGCGSCALSCRDNSTTAI--------VKDGNRYRVDDEKCIGCAL 868 Query: 109 CQEACPVDAIVEGPNFEFATETRQEL 134 C CPV+AI T +EL Sbjct: 869 CSSVCPVNAIEYVKVKGLNEMTPEEL 894 >gi|302876987|ref|YP_003845620.1| nitroreductase [Clostridium cellulovorans 743B] gi|307687678|ref|ZP_07630124.1| nitroreductase [Clostridium cellulovorans 743B] gi|302579844|gb|ADL53856.1| nitroreductase [Clostridium cellulovorans 743B] Length = 273 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 37/108 (34%), Gaps = 16/108 (14%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 E+CI C C C + I + G I C CG C CP Sbjct: 1 MMKVNAEKCIGCGQCIKDCFPRDIEMVDGKAI-----------IKNEACFKCGHCIAVCP 49 Query: 115 VDAIVEGPNF---EFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 +A+ + E ++E + ERLL N ++ + + + Sbjct: 50 KEAVS-TDEYNMEEVKNYQKEEFEIEPERLL-NFIKFRRTVRQFRNKE 95 >gi|238620908|ref|YP_002915734.1| formate dehydrogenase, alpha subunit [Sulfolobus islandicus M.16.4] gi|238381978|gb|ACR43066.1| formate dehydrogenase, alpha subunit [Sulfolobus islandicus M.16.4] Length = 979 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQE 111 Y +CI C C C A+ R V + I C+ CG C Sbjct: 139 FYVYDPSQCILCGRCVEACQDFAVNEVIWINWDLNPPRVVWDNGNPIGKSSCVNCGTCVT 198 Query: 112 ACPVDAIVE 120 CPV+A++E Sbjct: 199 VCPVNALME 207 Score = 40.1 bits (92), Expect = 0.095, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 7/86 (8%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKL-------CEAICPAQAITIESGPRCHDGTRRTV 94 S R R + C C+ E++ + + + + Sbjct: 79 KRSMEARKTAISRILRYHKLYCSMCENNNGDCVLHESVIKLNINSQKYIEKPYQVDDSGP 138 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVE 120 Y D +CI CG C EAC A+ E Sbjct: 139 FYVYDPSQCILCGRCVEACQDFAVNE 164 >gi|228909379|ref|ZP_04073204.1| formate dehydrogenase [Bacillus thuringiensis IBL 200] gi|228850156|gb|EEM94985.1| formate dehydrogenase [Bacillus thuringiensis IBL 200] Length = 979 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 7/96 (7%) Query: 33 TINYPFE-KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 YP+E K S Y +CIAC C +C + Sbjct: 123 HQKYPYEPKVDVSEVDMTHP---FYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERP 179 Query: 92 RTVR---YDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 R + +I+ C+ CG C CP +A++E F Sbjct: 180 RVIWDEGVNINDSSCVSCGQCVTICPCNALMEKTMF 215 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 91 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|229580377|ref|YP_002838777.1| formate dehydrogenase, alpha subunit [Sulfolobus islandicus Y.G.57.14] gi|228011093|gb|ACP46855.1| formate dehydrogenase, alpha subunit [Sulfolobus islandicus Y.G.57.14] Length = 979 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQE 111 Y +CI C C C A+ R V + I C+ CG C Sbjct: 139 FYVYDPSQCILCGRCVEACQDFAVNEVIWINWDLNPPRVVWDNGNPIGNSSCVNCGTCVT 198 Query: 112 ACPVDAIVE 120 CPV+A++E Sbjct: 199 VCPVNALME 207 Score = 40.1 bits (92), Expect = 0.091, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 7/86 (8%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKL-------CEAICPAQAITIESGPRCHDGTRRTV 94 S R R + C C+ E++ + + + + Sbjct: 79 KRSMEARKTAISRILRYHKLYCSMCENNNGDCVLHESVIKLNINSQKYIEKPYQVDDSGP 138 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVE 120 Y D +CI CG C EAC A+ E Sbjct: 139 FYVYDPSQCILCGRCVEACQDFAVNE 164 >gi|220905145|ref|YP_002480457.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869444|gb|ACL49779.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 192 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 37/108 (34%), Gaps = 10/108 (9%) Query: 20 FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79 + R + +T +P + T R RG + + C+ C +C C A AI Sbjct: 5 LKVLFRNLLEGPSTDPFPLGETFTPERLRGRAVV-----DPDLCMGCGICRHSCAAGAIH 59 Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 I P I C C C+ CP A+ ++ A Sbjct: 60 IGQLPDSSG-----FTITIWQNSCCLCASCRHYCPTGAMSISTDWHSA 102 >gi|160947614|ref|ZP_02094781.1| hypothetical protein PEPMIC_01549 [Parvimonas micra ATCC 33270] gi|158446748|gb|EDP23743.1| hypothetical protein PEPMIC_01549 [Parvimonas micra ATCC 33270] Length = 531 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 15/93 (16%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 ++F+ + + +K +C+ C C CP IT Sbjct: 451 HYFRNEYEAHIYDKKCPAGVCQALLEFFITD-----KCVGCTKCAKACPVDCITGVQKE- 504 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + ID KCI CG C+ ACPV+AI Sbjct: 505 ---------LHVIDPSKCIKCGSCEAACPVNAI 528 >gi|227828716|ref|YP_002830496.1| formate dehydrogenase, subunit alpha [Sulfolobus islandicus M.14.25] gi|227460512|gb|ACP39198.1| formate dehydrogenase, alpha subunit [Sulfolobus islandicus M.14.25] Length = 979 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQE 111 Y +CI C C C A+ R V + I C+ CG C Sbjct: 139 FYVYDPSQCILCGRCVEACQDFAVNEVIWINWDLNPPRVVWDNGNPIGNSSCVNCGTCVT 198 Query: 112 ACPVDAIVE 120 CPV+A++E Sbjct: 199 VCPVNALME 207 Score = 40.1 bits (92), Expect = 0.092, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 7/86 (8%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKL-------CEAICPAQAITIESGPRCHDGTRRTV 94 S R R + C C+ E++ + + + + Sbjct: 79 KRSMEARKTAISRILRYHKLYCSMCENNNGDCVLHESVIKLNINSQKYIEKPYQVDDSGP 138 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVE 120 Y D +CI CG C EAC A+ E Sbjct: 139 FYVYDPSQCILCGRCVEACQDFAVNE 164 >gi|221310658|ref|ZP_03592505.1| hypothetical protein Bsubs1_14876 [Bacillus subtilis subsp. subtilis str. 168] gi|221314981|ref|ZP_03596786.1| hypothetical protein BsubsN3_14792 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221319902|ref|ZP_03601196.1| hypothetical protein BsubsJ_14703 [Bacillus subtilis subsp. subtilis str. JH642] gi|221324183|ref|ZP_03605477.1| hypothetical protein BsubsS_14847 [Bacillus subtilis subsp. subtilis str. SMY] gi|321312247|ref|YP_004204534.1| putative oxidoreductase [Bacillus subtilis BSn5] gi|320018521|gb|ADV93507.1| putative oxido-reductase [Bacillus subtilis BSn5] Length = 979 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 4/91 (4%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+ + + Y +CIAC C +C + R Sbjct: 123 HQKYPYTPKEDPSCAV-DMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWERERPR 181 Query: 93 TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120 + + I+ C+ CG C CP +A++E Sbjct: 182 VIWDEGVPINESSCVSCGQCVTVCPCNALME 212 >gi|284998992|ref|YP_003420760.1| formate dehydrogenase, alpha subunit [Sulfolobus islandicus L.D.8.5] gi|284446888|gb|ADB88390.1| formate dehydrogenase, alpha subunit [Sulfolobus islandicus L.D.8.5] Length = 979 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQE 111 Y +CI C C C A+ R V + I C+ CG C Sbjct: 139 FYVYDPSQCILCGRCVEACQDFAVNEVIWINWDLNPPRVVWDNGNPIGNSSCVNCGTCVT 198 Query: 112 ACPVDAIVE 120 CPV+A++E Sbjct: 199 VCPVNALME 207 Score = 40.1 bits (92), Expect = 0.095, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 7/86 (8%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKL-------CEAICPAQAITIESGPRCHDGTRRTV 94 S R R + C C+ E++ + + + + Sbjct: 79 KRSMEARKTAISRILRYHKLYCSMCENNNGDCVLHESVIKLNINSQKYIEKPYQVDDSGP 138 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVE 120 Y D +CI CG C EAC A+ E Sbjct: 139 FYVYDPSQCILCGRCVEACQDFAVNE 164 >gi|229580988|ref|YP_002839387.1| formate dehydrogenase, alpha subunit [Sulfolobus islandicus Y.N.15.51] gi|228011704|gb|ACP47465.1| formate dehydrogenase, alpha subunit [Sulfolobus islandicus Y.N.15.51] Length = 979 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQE 111 Y +CI C C C A+ R V + I C+ CG C Sbjct: 139 FYVYDPSQCILCGRCVEACQDFAVNEVIWINWDLNPPRVVWDNGNPIGNSSCVNCGTCVT 198 Query: 112 ACPVDAIVE 120 CPV+A++E Sbjct: 199 VCPVNALME 207 Score = 40.5 bits (93), Expect = 0.085, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 7/86 (8%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKL-------CEAICPAQAITIESGPRCHDGTRRTV 94 S R R + C C+ E++ + + + + Sbjct: 79 KRSMEARKNAISRILRYHKLYCSMCENNNGDCVLHESVIKLNINSQKYIEKPYQVDDSGP 138 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVE 120 Y D +CI CG C EAC A+ E Sbjct: 139 FYVYDPSQCILCGRCVEACQDFAVNE 164 >gi|310658217|ref|YP_003935938.1| [fe] hydrogenase, electron-transfer subunit [Clostridium sticklandii DSM 519] gi|308824995|emb|CBH21033.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium sticklandii] Length = 625 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 10/69 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L +Y EE+CI C C +CP I+ + ++ ID +CI CG C +A Sbjct: 567 LLKYMINEEKCIGCTKCAKVCPVSCISG----------KVKEKHVIDQNQCIKCGACFDA 616 Query: 113 CPVDAIVEG 121 CPV+AI +G Sbjct: 617 CPVNAITKG 625 Score = 41.2 bits (95), Expect = 0.049, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 18/40 (45%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ + ++Y I+ KCI C C + CPV I Sbjct: 553 HVQDKICPAGACQSLLKYMINEEKCIGCTKCAKVCPVSCI 592 >gi|291485126|dbj|BAI86201.1| hypothetical protein BSNT_03950 [Bacillus subtilis subsp. natto BEST195] Length = 982 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 4/91 (4%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+ + + Y +CIAC C +C + R Sbjct: 126 HQKYPYTPKEDPSCAV-DMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWERERPR 184 Query: 93 TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120 + + I+ C+ CG C CP +A++E Sbjct: 185 VIWDEGVPINESSCVSCGQCVTVCPCNALME 215 >gi|218282605|ref|ZP_03488843.1| hypothetical protein EUBIFOR_01429 [Eubacterium biforme DSM 3989] gi|218216476|gb|EEC90014.1| hypothetical protein EUBIFOR_01429 [Eubacterium biforme DSM 3989] Length = 1182 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 27/87 (31%), Gaps = 15/87 (17%) Query: 52 ALRRYPNGEERCIACKLCEAICPA-------------QAITIESGPRCHDGTRRTVRYDI 98 A+ E+CI C C +C +A + +Y + Sbjct: 686 AVTVPEWDAEKCIQCNQCAFVCSHATIRPFLLSEEEVKAAPAQIKLADVKPKATEFKYTM 745 Query: 99 D--MIKCIYCGLCQEACPVDAIVEGPN 123 + C+ CG C CP AI P Sbjct: 746 SVSPLDCMGCGECITVCPTQAIKMVPQ 772 >gi|124028304|ref|YP_001013624.1| indolepyruvate oxidoreductase subunit [Hyperthermus butylicus DSM 5456] gi|123978998|gb|ABM81279.1| indolepyruvate oxidoreductase subunit [Hyperthermus butylicus DSM 5456] Length = 632 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 33/105 (31%), Gaps = 12/105 (11%) Query: 19 AFFLCLRYFFKAK-TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA 77 + F + + + R + + Y E+C +C C + A Sbjct: 535 GMARVVAEFLRKPGVNVIIAKHPCALLEA-RLKGVEKVYTVVPEKCTSCMACVKVTGCPA 593 Query: 78 ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + + + I C CGLC CP AIVE P Sbjct: 594 LYVTEDGKVG----------IVEEDCTGCGLCARFCPYGAIVEKP 628 >gi|33592565|ref|NP_880209.1| putative iron-sulfur binding protein [Bordetella pertussis Tohama I] gi|33572211|emb|CAE41759.1| putative iron-sulfur binding protein [Bordetella pertussis Tohama I] gi|332381983|gb|AEE66830.1| putative iron-sulfur binding protein [Bordetella pertussis CS] Length = 696 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 9/79 (11%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C C + CP+ A+ ++ + + C+ CGLC CP +AI Sbjct: 563 DSDACTLCMSCVSACPSNALLDNP---------QSPQLRMVEKNCVQCGLCATTCPENAI 613 Query: 119 VEGPNFEFATETRQELYYD 137 P A R+ + + Sbjct: 614 TLVPRLLLAPRRREAVVLN 632 Score = 42.0 bits (97), Expect = 0.029, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 9/58 (15%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 + C+ C IC A+AI+ +S R ++ C+ CG C CP A+ Sbjct: 314 VGCRACIDICSARAISSDS---------HHQRIVVNPSLCVGCGACTTVCPSGALTYT 362 Score = 34.3 bits (77), Expect = 5.5, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 13/30 (43%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 ID+ C C C ACP AI + A Sbjct: 191 IDLDLCTRCNACISACPDGAIGLDYQVDTA 220 >gi|16079776|ref|NP_390600.1| oxidoreductase [Bacillus subtilis subsp. subtilis str. 168] gi|81415751|sp|Q795Y4|FDHL_BACSU RecName: Full=Putative formate dehydrogenase yrhE gi|2635168|emb|CAB14664.1| putative oxido-reductase [Bacillus subtilis subsp. subtilis str. 168] Length = 980 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 4/91 (4%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+ + + Y +CIAC C +C + R Sbjct: 124 HQKYPYTPKEDPSCAV-DMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWERERPR 182 Query: 93 TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120 + + I+ C+ CG C CP +A++E Sbjct: 183 VIWDEGVPINESSCVSCGQCVTVCPCNALME 213 >gi|329119761|ref|ZP_08248439.1| electron transport complex protein RnfB [Neisseria bacilliformis ATCC BAA-1200] gi|327464124|gb|EGF10431.1| electron transport complex protein RnfB [Neisseria bacilliformis ATCC BAA-1200] Length = 281 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 30/83 (36%), Gaps = 12/83 (14%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 K +P AL E CI C C CP AI S + + + Sbjct: 63 KPPLAPVKIQTPAL--AWIDEAACIGCTACIRACPVDAIMGASK----------LMHTVI 110 Query: 100 MIKCIYCGLCQEACPVDAIVEGP 122 +C CGLC CPVD I P Sbjct: 111 AAECTGCGLCVAPCPVDCIHMRP 133 >gi|320162233|ref|YP_004175458.1| putative pyruvate:ferredoxin oxidoreductase [Anaerolinea thermophila UNI-1] gi|319996087|dbj|BAJ64858.1| putative pyruvate:ferredoxin oxidoreductase [Anaerolinea thermophila UNI-1] Length = 1190 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 28/108 (25%), Gaps = 24/108 (22%) Query: 50 EHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVR 95 AL + CI C C +CP A + Sbjct: 684 NIALEIPVWEPDLCIQCGKCAMVCPHAVIRMKVYEPELLANAPATFKSIDAKFKEFPNTK 743 Query: 96 YDID--MIKCIYCGLCQEACPV--------DAIVEGPNFEFATETRQE 133 + I C C LC EACP AI P + R+ Sbjct: 744 FTIQVAPEDCTGCALCVEACPAKDKTQAGRKAINMAPQPPIREQEREN 791 >gi|296333186|ref|ZP_06875639.1| putative oxido-reductase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305675308|ref|YP_003866980.1| putative oxido-reductase [Bacillus subtilis subsp. spizizenii str. W23] gi|296149384|gb|EFG90280.1| putative oxido-reductase [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305413552|gb|ADM38671.1| putative oxido-reductase [Bacillus subtilis subsp. spizizenii str. W23] Length = 979 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 4/91 (4%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+ + + Y +CIAC C +C + R Sbjct: 123 HQKYPYTPKEDPSCAV-DMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWERERPR 181 Query: 93 TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120 + + I+ C+ CG C CP +A++E Sbjct: 182 VIWDEGVPINESSCVSCGQCVTVCPCNALME 212 >gi|1934609|gb|AAB80862.1| formate dehydrogenase chain A [Bacillus subtilis subsp. subtilis str. 168] Length = 982 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 4/91 (4%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+ + + Y +CIAC C +C + R Sbjct: 126 HQKYPYTPKEDPSCAV-DMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWERERPR 184 Query: 93 TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120 + + I+ C+ CG C CP +A++E Sbjct: 185 VIWDEGVPINESSCVSCGQCVTVCPCNALME 215 >gi|295110160|emb|CBL24113.1| Iron only hydrogenase large subunit, C-terminal domain [Ruminococcus obeum A2-162] Length = 501 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 7/83 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRC------HDGTRRTVRYDIDMIKCIYCGLCQ 110 +++CI C C+A CP AI+ P G+ R I KC+ CG+C Sbjct: 146 YIDQDKCIKCGKCKASCPYDAISHNVRPCEQACGVKAIGSDEQGRASILEDKCVSCGMCM 205 Query: 111 EACPVDAI-VEGPNFEFATETRQ 132 +CP AI + F+ A R Sbjct: 206 VSCPFGAISDKSQIFQLAHALRD 228 Score = 40.9 bits (94), Expect = 0.059, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 13/62 (20%) Query: 61 ERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C C CP AI+++ G ID KCI CG C+ +CP DAI Sbjct: 119 NMCRGCVAHPCMQACPKGAISMKDGKSY-----------IDQDKCIKCGKCKASCPYDAI 167 Query: 119 VE 120 Sbjct: 168 SH 169 >gi|282163784|ref|YP_003356169.1| hypothetical protein MCP_1114 [Methanocella paludicola SANAE] gi|282156098|dbj|BAI61186.1| conserved hypothetical protein [Methanocella paludicola SANAE] Length = 381 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 33/97 (34%), Gaps = 11/97 (11%) Query: 28 FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH 87 FK T++ R R RC+ C +C CP +A+ G Sbjct: 289 FKKPPTMSMERIPPVLLNAAR-RLVSNRPRIDVSRCVKCGICARDCPPKAMKFTKGAAPV 347 Query: 88 DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 ID KCI C CQE CP A+ F Sbjct: 348 ----------IDQGKCIRCYCCQELCPEGAVYVAKPF 374 >gi|113971070|ref|YP_734863.1| FAD linked oxidase domain-containing protein [Shewanella sp. MR-4] gi|113885754|gb|ABI39806.1| FAD linked oxidase domain protein [Shewanella sp. MR-4] Length = 934 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 9/93 (9%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 E + I + + D + KCI CG C++ CP A+ P AT Sbjct: 509 EGLLNPGVILNDDSTVHVKNIKPCPVVDDFVDKCIECGFCEKTCPTSALNFSPRQRIATL 568 Query: 130 TRQELYYDKERLLNNGDRWESEIVRNIVTDSPY 162 R+ ERL +GD+ + D+ Y Sbjct: 569 -RE-----IERLEQSGDK---AAADKMRADAKY 592 Score = 38.2 bits (87), Expect = 0.37, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 26/76 (34%), Gaps = 18/76 (23%) Query: 57 PNGEERCIACKLCEAICPAQAITIES-----------------GPRCHDGTRRTVRYDID 99 + ++CI C CE CP A+ D R +YD+ Sbjct: 536 DDFVDKCIECGFCEKTCPTSALNFSPRQRIATLREIERLEQSGDKAAADKMRADAKYDVI 595 Query: 100 MIKCIYCGLCQEACPV 115 C C LC ACPV Sbjct: 596 -DTCAACQLCTIACPV 610 >gi|229075467|ref|ZP_04208456.1| formate dehydrogenase [Bacillus cereus Rock4-18] gi|228707716|gb|EEL59900.1| formate dehydrogenase [Bacillus cereus Rock4-18] Length = 975 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+E + Y +CIAC C +C + R Sbjct: 119 HQKYPYE--PKVDGSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWEAERPR 176 Query: 93 TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120 + DI+ C+ CG C CP +A++E Sbjct: 177 VIWDNGVDINDSSCVSCGQCVTICPCNALME 207 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 87 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDGSEVDMTHPFYRYDPNQ 146 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 147 CIACGQCVEVC 157 >gi|229098016|ref|ZP_04228966.1| formate dehydrogenase [Bacillus cereus Rock3-29] gi|228685453|gb|EEL39381.1| formate dehydrogenase [Bacillus cereus Rock3-29] Length = 975 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 7/92 (7%) Query: 33 TINYPFE-KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 YP+E K S Y +CIAC C +C + Sbjct: 119 HQKYPYEPKIDVSEVDMTHP---FYRYDPNQCIACGQCVEVCQNLQVNETISIDWEAERP 175 Query: 92 RTVR---YDIDMIKCIYCGLCQEACPVDAIVE 120 R + DI+ C+ CG C CP +A++E Sbjct: 176 RVIWDNGVDINDSSCVSCGQCVTICPCNALME 207 Score = 39.7 bits (91), Expect = 0.12, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 87 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKIDVSEVDMTHPFYRYDPNQ 146 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 147 CIACGQCVEVC 157 >gi|229117035|ref|ZP_04246417.1| formate dehydrogenase [Bacillus cereus Rock1-3] gi|228666439|gb|EEL21899.1| formate dehydrogenase [Bacillus cereus Rock1-3] Length = 979 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 7/92 (7%) Query: 33 TINYPFE-KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 YP+E K S Y +CIAC C +C + Sbjct: 123 HQKYPYEPKIDVSEVDMTHP---FYRYDPNQCIACGQCVEVCQNLQVNETISIDWEAERP 179 Query: 92 RTVR---YDIDMIKCIYCGLCQEACPVDAIVE 120 R + DI+ C+ CG C CP +A++E Sbjct: 180 RVIWDNGVDINDSSCVSCGQCVTICPCNALME 211 Score = 39.7 bits (91), Expect = 0.12, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 91 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKIDVSEVDMTHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|114048300|ref|YP_738850.1| FAD linked oxidase domain-containing protein [Shewanella sp. MR-7] gi|113889742|gb|ABI43793.1| FAD linked oxidase domain protein [Shewanella sp. MR-7] Length = 934 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 9/93 (9%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 E + I + + D + KCI CG C++ CP A+ P AT Sbjct: 509 EGLLNPGVILNDDSTVHVKNIKPCPVVDDFVDKCIECGFCEKTCPTSALNFSPRQRIATL 568 Query: 130 TRQELYYDKERLLNNGDRWESEIVRNIVTDSPY 162 R+ ERL +GD+ + D+ Y Sbjct: 569 -RE-----IERLEQSGDK---AAADKMRADAKY 592 Score = 38.2 bits (87), Expect = 0.38, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 26/76 (34%), Gaps = 18/76 (23%) Query: 57 PNGEERCIACKLCEAICPAQAITIES-----------------GPRCHDGTRRTVRYDID 99 + ++CI C CE CP A+ D R +YD+ Sbjct: 536 DDFVDKCIECGFCEKTCPTSALNFSPRQRIATLREIERLEQSGDKAAADKMRADAKYDVI 595 Query: 100 MIKCIYCGLCQEACPV 115 C C LC ACPV Sbjct: 596 -DTCAACQLCTIACPV 610 >gi|14250944|emb|CAC39239.1| FdhA-II protein [Eubacterium acidaminophilum] Length = 897 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 3/68 (4%) Query: 55 RYPNGEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQE 111 Y + + +CI+C C +C Q T +D+D+ K C+ CG C Sbjct: 138 FYISDQNKCISCGRCVRVCNELQCTGAIDLAERGFDTHVATPFDVDLEKSKCVSCGNCVA 197 Query: 112 ACPVDAIV 119 CPV A++ Sbjct: 198 VCPVGALM 205 Score = 33.5 bits (75), Expect = 8.6, Method: Composition-based stats. Identities = 12/56 (21%), Positives = 17/56 (30%), Gaps = 5/56 (8%) Query: 63 CIACKLC-----EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 C+ C + E + ++ Y D KCI CG C C Sbjct: 101 CVKSGDCRLQDYCYEYGVKEPEFEGAKKNYEIDDSNPFYISDQNKCISCGRCVRVC 156 >gi|326391859|ref|ZP_08213372.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter ethanolicus JW 200] gi|325992099|gb|EGD50578.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter ethanolicus JW 200] Length = 1175 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 52/143 (36%), Gaps = 31/143 (21%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTRRTV 94 G+ + RG + CI C C +CP AI T E +G + Sbjct: 667 PGTAAYEKRGIAVDVPEWQ-IDNCIQCNQCAFVCPHAAIRPFLLTEEEVKNAPEGFKVKK 725 Query: 95 -----------RYDIDMIKCIYCGLCQEACP--VDAIVEGP---------NFEFATE-TR 131 R + ++ C CG+C CP A+V P N+E+A + Sbjct: 726 AIGKGFEGLYYRIQVSVLDCTGCGVCVNECPAKEKALVMKPLETQMEEAKNWEYAMTLSP 785 Query: 132 QELYYDKERLLNNGDRWESEIVR 154 +E +KE G ++E ++ Sbjct: 786 KENPMNKE--TVKGSQFEKPLLE 806 >gi|331091265|ref|ZP_08340106.1| hypothetical protein HMPREF9477_00749 [Lachnospiraceae bacterium 2_1_46FAA] gi|330404712|gb|EGG84251.1| hypothetical protein HMPREF9477_00749 [Lachnospiraceae bacterium 2_1_46FAA] Length = 502 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 36/85 (42%), Gaps = 7/85 (8%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGL 108 + +CI C C+A CP AI + P + R ID KC+ CG+ Sbjct: 145 HSFIDQTKCIKCGKCKANCPYDAIAKKERPCQKSCGVNAIVSDKYGRAKIDNDKCVSCGM 204 Query: 109 CQEACPVDAI-VEGPNFEFATETRQ 132 C +CP AI + F+ A R+ Sbjct: 205 CMVSCPFGAISDKSQIFQLARALRE 229 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 13/64 (20%) Query: 57 PNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 C C C+ +CP AI+++ G ID KCI CG C+ CP Sbjct: 116 YEVSNMCKGCVAHPCKEVCPVGAISMKDG-----------HSFIDQTKCIKCGKCKANCP 164 Query: 115 VDAI 118 DAI Sbjct: 165 YDAI 168 >gi|238756490|ref|ZP_04617795.1| Electron transport complex protein rnfC [Yersinia ruckeri ATCC 29473] gi|238705277|gb|EEP97689.1| Electron transport complex protein rnfC [Yersinia ruckeri ATCC 29473] Length = 552 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 35/101 (34%), Gaps = 3/101 (2%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C LC CPA + + G + + CI CG C CP I Sbjct: 353 CIRCGLCVDACPAG-LLPQQLYWFSRGEEHEKARNHHLFDCIECGACAYVCPSH-IPLVQ 410 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + + L + R R+E++ R + + R Sbjct: 411 YYRQEKAEIKALDLETARATEAKARFEAKQAR-LEREKSAR 450 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 9/16 (56%), Positives = 10/16 (62%) Query: 99 DMIKCIYCGLCQEACP 114 CI CGLC +ACP Sbjct: 349 QEEACIRCGLCVDACP 364 >gi|254505773|ref|ZP_05117919.1| putative formate dehydrogenase alpha subunit [Vibrio parahaemolyticus 16] gi|219551426|gb|EED28405.1| putative formate dehydrogenase alpha subunit [Vibrio parahaemolyticus 16] Length = 1402 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 14/79 (17%) Query: 59 GEERCIACKLCEAICPAQAITIE--------------SGPRCHDGTRRTVRYDIDMIKCI 104 RCI+C C C QA+ R H G+ + R + C+ Sbjct: 631 DANRCISCGQCIQACSEQAVHGILNFVHDQHGRPALRPDDRPHFGSSKNGRLLMGDSNCV 690 Query: 105 YCGLCQEACPVDAIVEGPN 123 CG C +ACP A+V+ + Sbjct: 691 QCGACVQACPTGAMVDSRD 709 Score = 34.7 bits (78), Expect = 4.6, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 21/72 (29%), Gaps = 9/72 (12%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P ++ G + G+ C+ C C CP A+ Sbjct: 668 PDDRPHFGSSKNGRLLM-----GDSNCVQCGACVQACPTGAMVDSRDRAQGREEVLKKVD 722 Query: 97 DIDMIKCIYCGL 108 I C YCG+ Sbjct: 723 TI----CTYCGV 730 >gi|113972044|ref|YP_735837.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Shewanella sp. MR-4] gi|113886728|gb|ABI40780.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella sp. MR-4] Length = 553 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 30/82 (36%), Gaps = 9/82 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+C C C AICP A+ C+ CGLC+ ACP I Sbjct: 419 NVEKCTLCMSCVAICPTMALQDGGDKPALH---------FIEQNCVQCGLCEAACPEKVI 469 Query: 119 VEGPNFEFATETRQELYYDKER 140 P F RQ+L KE Sbjct: 470 SLTPQINFDKAARQQLQTLKEE 491 Score = 37.0 bits (84), Expect = 0.86, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 11/53 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C CPA AI+ + ++D C G C ACP AI Sbjct: 195 CNRCLNFCPADAISSVAKK-----------IEVDPYLCHGAGSCSSACPTGAI 236 >gi|114049274|ref|YP_739824.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Shewanella sp. MR-7] gi|113890716|gb|ABI44767.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella sp. MR-7] Length = 553 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 30/82 (36%), Gaps = 9/82 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+C C C AICP A+ C+ CGLC+ ACP I Sbjct: 419 NVEKCTLCMSCVAICPTMALQDGGDKPALH---------FIEQNCVQCGLCEAACPEKVI 469 Query: 119 VEGPNFEFATETRQELYYDKER 140 P F RQ+L KE Sbjct: 470 SLTPQINFDKAARQQLQTLKEE 491 Score = 37.0 bits (84), Expect = 0.86, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 11/53 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C CPA AI+ + ++D C G C ACP AI Sbjct: 195 CNRCLNFCPADAISSVAKK-----------IEVDPYLCHGAGSCSSACPTGAI 236 >gi|328952636|ref|YP_004369970.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfobacca acetoxidans DSM 11109] gi|328452960|gb|AEB08789.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfobacca acetoxidans DSM 11109] Length = 780 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 1/58 (1%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C A+CP Q I + Y ID +C CG C E CP +AI Sbjct: 246 CNLCGQCAAVCPVQ-INDHAAIYLPSPHAFPTGYVIDSEQCTRCGACLEVCPQEAITL 302 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 10/72 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP---V 115 E+C CK C CP QAI + + + + C CG+C ACP V Sbjct: 567 DPEKCTGCKRCFQQCPFQAIELYDREGE-------TKARVIVAACKGCGVCAGACPAEAV 619 Query: 116 DAIVEGPNFEFA 127 A A Sbjct: 620 TAYGFTDEMILA 631 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 10/29 (34%), Positives = 13/29 (44%) Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + +ID KC C C + CP AI Sbjct: 562 IVCEIDPEKCTGCKRCFQQCPFQAIELYD 590 >gi|227485074|ref|ZP_03915390.1| pyruvate synthase [Anaerococcus lactolyticus ATCC 51172] gi|227236907|gb|EEI86922.1| pyruvate synthase [Anaerococcus lactolyticus ATCC 51172] Length = 1175 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 39/114 (34%), Gaps = 20/114 (17%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESG 83 FE G+T+ RG AL + CI C C +CP A Sbjct: 665 FESGTTAYEKRG-IALNVPEWQIDNCIQCNQCSYVCPHAVIRPFLVTEEEKANAPEGFET 723 Query: 84 PRCHDGTRRTVRYDID--MIKCIYCGLCQEAC--PVDAIVEGPNFEFATETRQE 133 + + I + C CG C + C P A++ P FE E ++ Sbjct: 724 KKAIGKGMDGFTFRIQVSPLDCTGCGNCADVCPAPKKALLMKP-FEEEVEKEKD 776 >gi|222100042|ref|YP_002534610.1| Fe-hydrogenase beta subunit [Thermotoga neapolitana DSM 4359] gi|221572432|gb|ACM23244.1| Fe-hydrogenase beta subunit [Thermotoga neapolitana DSM 4359] Length = 626 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 30/69 (43%), Gaps = 10/69 (14%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 A ++Y E C C LC CP AIT E G Y ID KC+ CG+C Sbjct: 567 AFKKYVINPEICKGCGLCARSCPQNAITGERGKP----------YRIDQEKCVKCGVCAS 616 Query: 112 ACPVDAIVE 120 CP AI Sbjct: 617 KCPFKAIEL 625 Score = 41.2 bits (95), Expect = 0.042, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 16/39 (41%) Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 G +Y I+ C CGLC +CP +AI Sbjct: 555 HIEGECPSGMCTAFKKYVINPEICKGCGLCARSCPQNAI 593 >gi|300690753|ref|YP_003751748.1| 4Fe-4S ferredoxin [Ralstonia solanacearum PSI07] gi|299077813|emb|CBJ50451.1| putative 4Fe-4S ferredoxin [Ralstonia solanacearum PSI07] Length = 708 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 9/74 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ERC C C + CP+QA+ ++ + C+ CGLC+ CP DAI Sbjct: 576 DRERCTLCMACVSACPSQALRDQAE---------RPVLSMIERNCVQCGLCETTCPEDAI 626 Query: 119 VEGPNFEFATETRQ 132 P + + RQ Sbjct: 627 ALVPRLNLSADARQ 640 Score = 41.2 bits (95), Expect = 0.042, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 7/55 (12%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C +C A AIT + + C+ CG C ACP A+ Sbjct: 323 VGCDACVRVCSAAAITSQWKDGRGSVH-------VTPNLCVGCGACTTACPTGAL 370 Score = 38.2 bits (87), Expect = 0.41, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 20/48 (41%) Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 A + SG + R ID+ +C +C C + CP DAI Sbjct: 168 WPIQAGELVQVSGWLGAFEVQWRSRNPIDLDRCTHCNACIDVCPEDAI 215 Score = 34.7 bits (78), Expect = 4.1, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 24/89 (26%), Gaps = 19/89 (21%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYP-----NGEERCIACKLCEAICPAQAITIESGP 84 +P + G A +RC C C +CP AI Sbjct: 162 PPMERRWPIQAGELVQVSGWLGAFEVQWRSRNPIDLDRCTHCNACIDVCPEDAID----- 216 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 Y ID+ C C +AC Sbjct: 217 ---------TLYQIDLDACRDHRDCVKAC 236 Score = 34.7 bits (78), Expect = 4.9, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 1/66 (1%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR-YDIDMI 101 S R + E C+ C LCE CP AI + R+ V + Sbjct: 591 PSQALRDQAERPVLSMIERNCVQCGLCETTCPEDAIALVPRLNLSADARQPVTLNETQPF 650 Query: 102 KCIYCG 107 CI CG Sbjct: 651 HCIRCG 656 >gi|291286072|ref|YP_003502888.1| Electron transfer flavoprotein alpha subunit [Denitrovibrio acetiphilus DSM 12809] gi|290883232|gb|ADD66932.1| Electron transfer flavoprotein alpha subunit [Denitrovibrio acetiphilus DSM 12809] Length = 440 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 31/74 (41%), Gaps = 16/74 (21%) Query: 48 RGEHALRRYPNGEERCIACK-LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 RG L+ CIAC CE+ CP A+T++ I+ KCI C Sbjct: 8 RGVARLKPD-----TCIACGARCESACPVDAVTMDDNESP----------IINEEKCIGC 52 Query: 107 GLCQEACPVDAIVE 120 C + CP DAI Sbjct: 53 VKCVKVCPADAIFM 66 Score = 34.3 bits (77), Expect = 6.1, Method: Composition-based stats. Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%) Query: 100 MIKCIYCGL-CQEACPVDAIVEGPN 123 CI CG C+ ACPVDA+ N Sbjct: 15 PDTCIACGARCESACPVDAVTMDDN 39 >gi|148976171|ref|ZP_01812914.1| iron-sulfur cluster-binding protein [Vibrionales bacterium SWAT-3] gi|145964566|gb|EDK29820.1| iron-sulfur cluster-binding protein [Vibrionales bacterium SWAT-3] Length = 555 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 36/102 (35%), Gaps = 9/102 (8%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + C C C A+CP +A+ + + CI CGLC++ACP + Sbjct: 417 CESKDCTLCMSCVAVCPTRALHTDGA---------SPSLKFVEQDCIQCGLCEKACPENV 467 Query: 118 IVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 + P + E RQ+ E R + D Sbjct: 468 LTLTPRMNWVKEERQKAVVIHEEKAAECVRCHKPFAPQSMID 509 Score = 37.4 bits (85), Expect = 0.73, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 6/53 (11%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C CPA A++ E + + +I+ C G C +CP +AI Sbjct: 188 CERCVDACPAGALSSEGSDKTGH------KIEINPYLCQGVGTCATSCPTEAI 234 >gi|15678946|ref|NP_276063.1| tungsten formylmethanofuran dehydrogenase, subunit F-like protein [Methanothermobacter thermautotrophicus str. Delta H] gi|2622023|gb|AAB85424.1| tungsten formylmethanofuran dehydrogenase, subunit F homolog [Methanothermobacter thermautotrophicus str. Delta H] Length = 332 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 31/74 (41%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R E+CI C C A+CPA AI I +D KC+YCG Sbjct: 129 RKSLVKGEINVSMEKCIYCGECAAMCPASAIEISWRDPDSSNMAIADGIRVDEDKCLYCG 188 Query: 108 LCQEACPVDAIVEG 121 +C+ CPV AI Sbjct: 189 ICKRICPVGAIRMS 202 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 4/83 (4%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-- 97 + P RG + R +E+C+ C LC ++C AI ++ + G +D Sbjct: 38 RAPLLPIARGLIKMNRVSFNKEKCVLCGLCASVCIFGAIDLQKDGKSIRGADEYPFWDFK 97 Query: 98 --IDMIKCIYCGLCQEACPVDAI 118 ID KC CG C +ACP +A+ Sbjct: 98 LEIDDEKCFLCGNCADACPRNAL 120 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 26/76 (34%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R R + C C LC CP AI G + R + KC+ CG Sbjct: 6 RMGSERRTLNYNPDLCTGCGLCSETCPVNAIDRAPLLPIARGLIKMNRVSFNKEKCVLCG 65 Query: 108 LCQEACPVDAIVEGPN 123 LC C AI + Sbjct: 66 LCASVCIFGAIDLQKD 81 Score = 41.2 bits (95), Expect = 0.051, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 3/63 (4%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---YDIDMIKCIYCGLCQEACPV 115 E++C+ C +C+ ICP AI + ++ + +C +CG C E CP Sbjct: 180 DEDKCLYCGICKRICPVGAIRMSCLTCMYNEELKATVEGAVITIDERCAHCGWCMEICPA 239 Query: 116 DAI 118 +AI Sbjct: 240 NAI 242 Score = 34.3 bits (77), Expect = 5.5, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 10/64 (15%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY--CGLCQEACPVDAI 118 ERC C C ICPA AIT++ R +C C C + CP +AI Sbjct: 225 ERCAHCGWCMEICPANAITVKKPIRGTISQA--------DERCRGESCHACVDVCPCNAI 276 Query: 119 VEGP 122 Sbjct: 277 SIIN 280 >gi|330811333|ref|YP_004355795.1| Electron transport complex protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327379441|gb|AEA70791.1| Electron transport complex protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 341 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 28/78 (35%), Gaps = 10/78 (12%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 RG + E CI C C CP AI + + + I + +C Sbjct: 63 DTSRGVAPAQVAFIREAECIGCTKCIQACPVDAIVGAAK----------LMHTILIDECT 112 Query: 105 YCGLCQEACPVDAIVEGP 122 C LC CPVD I P Sbjct: 113 GCDLCVAPCPVDCIEMHP 130 >gi|258515754|ref|YP_003191976.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfotomaculum acetoxidans DSM 771] gi|257779459|gb|ACV63353.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfotomaculum acetoxidans DSM 771] Length = 369 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 10/68 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +++CI C C +CP +A T+ + I CI CG C CP AI Sbjct: 191 NQDKCIGCAQCSTVCPEKASTLNDNNKAE----------ISPDSCIGCGECLTTCPEKAI 240 Query: 119 VEGPNFEF 126 E Sbjct: 241 EMDWETEI 248 Score = 37.0 bits (84), Expect = 0.96, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 19/62 (30%), Gaps = 3/62 (4%) Query: 65 ACKLCEAICPAQAIT---IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 K E AI + P + + ++ KCI C C CP A Sbjct: 154 HFKGHEMAGFGGAIKNLAMGGAPAAGKKEQHASKMIVNQDKCIGCAQCSTVCPEKASTLN 213 Query: 122 PN 123 N Sbjct: 214 DN 215 >gi|320100539|ref|YP_004176131.1| pyruvate ferredoxin oxidoreductase subunit delta [Desulfurococcus mucosus DSM 2162] gi|319752891|gb|ADV64649.1| pyruvate ferredoxin oxidoreductase, delta subunit [Desulfurococcus mucosus DSM 2162] Length = 93 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 11/67 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +C C +C CP AI + +++ C CG+C CPV AI Sbjct: 36 DHGKCTKCMICWLFCPDMAIVWDGEK-----------IQVNLDYCKGCGICAHECPVKAI 84 Query: 119 VEGPNFE 125 P FE Sbjct: 85 SMVPEFE 91 >gi|167039777|ref|YP_001662762.1| cobyrinic acid a,c-diamide synthase [Thermoanaerobacter sp. X514] gi|300914979|ref|ZP_07132294.1| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter sp. X561] gi|307724899|ref|YP_003904650.1| cobyrinic acid a,c-diamide synthase [Thermoanaerobacter sp. X513] gi|166854017|gb|ABY92426.1| Cobyrinic acid a,c-diamide synthase [Thermoanaerobacter sp. X514] gi|300888703|gb|EFK83850.1| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter sp. X561] gi|307581960|gb|ADN55359.1| cobyrinic acid a,c-diamide synthase [Thermoanaerobacter sp. X513] Length = 291 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 42/110 (38%), Gaps = 22/110 (20%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE-------ERCIACKLCEAIC 73 L K K + E + + +GE ++ G+ ++CI C LCE +C Sbjct: 19 ATTLSTIVKNKIMADCDVEAPNLNIVLQGEIIEKQDFYGKETAVIDKDKCIECGLCERLC 78 Query: 74 PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 AI+ ++++ C CGLC CPV+AI Sbjct: 79 RFDAISN---------------FEVNPYYCEGCGLCMYKCPVEAIKLVEE 113 >gi|71281638|ref|YP_268922.1| electron transport complex protein RnfC [Colwellia psychrerythraea 34H] gi|71147378|gb|AAZ27851.1| electron transport complex, RnfABCDGE type, C subunit [Colwellia psychrerythraea 34H] Length = 788 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 13/112 (11%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + E CI C C +CP+Q + + + +++ CI CG C CP Sbjct: 378 ESNEVECIRCGQCSDVCPSQ-LLPQELQWSAKAKDYSQLEKLNLRDCIDCGACAYVCPSQ 436 Query: 117 AIVEGPNFEFAT-ETRQ----ELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 I + A E R+ +L +K ++ R+E+ +R + + R Sbjct: 437 -IPLVHYYRIAKAEIREQQQLDLKAEKAKI-----RFEARKLR-LEKEKVAR 481 >gi|83309275|ref|YP_419539.1| ferredoxin-NADP reductase [Magnetospirillum magneticum AMB-1] gi|82944116|dbj|BAE48980.1| Ferredoxin-NADP reductase [Magnetospirillum magneticum AMB-1] Length = 393 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 11/65 (16%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 R++ CI C CE CP AIT + Y + KC C C C Sbjct: 5 RQHLIDPVVCIRCNTCEEACPVDAITHDG-----------TNYVVSYDKCTGCRTCVSPC 53 Query: 114 PVDAI 118 P AI Sbjct: 54 PTGAI 58 Score = 38.2 bits (87), Expect = 0.39, Method: Composition-based stats. Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Query: 98 IDMIKCIYCGLCQEACPVDAI-VEGPNFEFATET 130 ID + CI C C+EACPVDAI +G N+ + + Sbjct: 9 IDPVVCIRCNTCEEACPVDAITHDGTNYVVSYDK 42 >gi|257789834|ref|YP_003180440.1| thiamine pyrophosphate protein domain-containing protein TPP-binding [Eggerthella lenta DSM 2243] gi|257473731|gb|ACV54051.1| thiamine pyrophosphate protein domain protein TPP-binding [Eggerthella lenta DSM 2243] Length = 735 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 2/76 (2%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C CK C I ++ R +R + +D C CGLC + CP DA+ Sbjct: 651 DAETCTGCKKCITEIGCPGIGFDADARGPRSKQRGQAF-VDPSLCNGCGLCVQVCPFDAL 709 Query: 119 VEG-PNFEFATETRQE 133 P + + ET + Sbjct: 710 SMTEPQTDVSRETSSD 725 >gi|229104102|ref|ZP_04234776.1| formate dehydrogenase [Bacillus cereus Rock3-28] gi|228679309|gb|EEL33512.1| formate dehydrogenase [Bacillus cereus Rock3-28] Length = 975 Score = 52.4 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 7/92 (7%) Query: 33 TINYPFE-KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 YP+E K S Y +CIAC C +C + Sbjct: 119 HQKYPYEPKVDVSEVDMTHP---FYRYDPNQCIACGQCVEVCQNLQVNETISIDWEAERP 175 Query: 92 RTVR---YDIDMIKCIYCGLCQEACPVDAIVE 120 R + DI+ C+ CG C CP +A++E Sbjct: 176 RVIWDNGVDINDSSCVSCGQCVTICPCNALME 207 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 87 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 146 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 147 CIACGQCVEVC 157 >gi|320103709|ref|YP_004179300.1| NAD-dependent formate dehydrogenase catalytic subunit [Isosphaera pallida ATCC 43644] gi|319750991|gb|ADV62751.1| NAD-dependent formate dehydrogenase iron-sulfur protein [Isosphaera pallida ATCC 43644] Length = 986 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 7/91 (7%) Query: 32 TTINYP-FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDG 89 TT +P ++ + P R A+ + CI C LC C Q + Sbjct: 187 TTSRFPARDETAIPPPDRSHPAM---AVHLDSCIQCGLCVRACREVQVNDVIGLAHRGYQ 243 Query: 90 TRRTVRYD--IDMIKCIYCGLCQEACPVDAI 118 TR +D + C+ CG C +ACP A+ Sbjct: 244 TRVVFDFDDPMGQSSCVGCGECVQACPTGAL 274 >gi|255525491|ref|ZP_05392428.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium carboxidivorans P7] gi|296188576|ref|ZP_06856964.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7] gi|255510856|gb|EET87159.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Clostridium carboxidivorans P7] gi|296046840|gb|EFG86286.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7] Length = 242 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 7/70 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C C C A++I+ + DID KCIYC C +ACP + Sbjct: 32 CNDNCTGCGKCVQECLVDAVSIKKD-------TKHKSIDIDFKKCIYCNNCVDACPSKVL 84 Query: 119 VEGPNFEFAT 128 +++ A+ Sbjct: 85 KSSNDYKMAS 94 >gi|148262877|ref|YP_001229583.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Geobacter uraniireducens Rf4] gi|146396377|gb|ABQ25010.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Geobacter uraniireducens Rf4] Length = 143 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 41/118 (34%), Gaps = 15/118 (12%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + T+ YP + + RG N +RCI C +C CP Sbjct: 3 IFTMTKTVTKNLVTGPATLMYPQRERIFTAITRGRIE-----NAIDRCIFCGMCGRRCPT 57 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 AI + + + ID +KC C LC E CPV + N R++ Sbjct: 58 YAIVVTKESKA---------WQIDRLKCCTCNLCVEVCPVKCLS-TDNHGKKEIDREQ 105 >gi|315442745|ref|YP_004075624.1| NADPH-dependent glutamate synthase beta chain-like oxidoreductase [Mycobacterium sp. Spyr1] gi|315261048|gb|ADT97789.1| NADPH-dependent glutamate synthase beta chain-like oxidoreductase [Mycobacterium sp. Spyr1] Length = 557 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 3/64 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C + C CP I G ID + C+ CG C ACP Sbjct: 1 MPHVITQSCCSDGSCVYACPVNCIHPSPDE---PGFATAEMLYIDPVACVDCGACVSACP 57 Query: 115 VDAI 118 V AI Sbjct: 58 VGAI 61 Score = 34.7 bits (78), Expect = 4.1, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 1/44 (2%) Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 + C G C ACPV+ I P+ E T + LY D Sbjct: 1 MPHVITQSCCSDGSCVYACPVNCIHPSPD-EPGFATAEMLYIDP 43 >gi|291534172|emb|CBL07285.1| glutamate synthase (NADPH) GltB3 subunit [Megamonas hypermegale ART12/1] Length = 778 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 23/73 (31%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L + RCI+C C E + Y D KCI CG+C Sbjct: 696 LGEPADDVNRCISCGTCRDCETCMQSCPEKAITRIQHLDGSFEYVSDANKCIGCGICAGV 755 Query: 113 CPVDAIVEGPNFE 125 CP N E Sbjct: 756 CPCGIWTLKNNPE 768 >gi|254168046|ref|ZP_04874894.1| 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family [Aciduliprofundum boonei T469] gi|289595976|ref|YP_003482672.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Aciduliprofundum boonei T469] gi|197623089|gb|EDY35656.1| 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family [Aciduliprofundum boonei T469] gi|289533763|gb|ADD08110.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Aciduliprofundum boonei T469] Length = 108 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 3/90 (3%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGT 90 P K ++ G R ++CI C +C CP AI E+ + Sbjct: 8 EPTPIAKVPSTENKTGGWRTFRPIIHYDKCIRCYICWKFCPDAAIHFASPEAHEAPKEAL 67 Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + +I+ C CG+C CP AI Sbjct: 68 AKFDTVEINYDFCKGCGICANECPTKAIEL 97 >gi|94676995|ref|YP_588861.1| pyruvate-flavodoxin oxidoreductase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94220145|gb|ABF14304.1| Pyruvate-flavodoxin oxidoreductase [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 1163 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 20/117 (17%), Positives = 27/117 (23%), Gaps = 24/117 (20%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A E C C C A C Sbjct: 646 ILAGLGDTL------PVSAFPPDGTWPIGTARWEKRNIAETIPIWTAELCTQCNYCVAAC 699 Query: 74 PA--------------QAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACP 114 P A T +Y + C CGLC + CP Sbjct: 700 PHAAIRAKVVAPTALDGAPTSLKFIDAKMRHMYGQKYLLQVAPEDCTGCGLCVKVCP 756 >gi|145222311|ref|YP_001132989.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Mycobacterium gilvum PYR-GCK] gi|145214797|gb|ABP44201.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Mycobacterium gilvum PYR-GCK] Length = 557 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 3/64 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C + C CP I G ID + C+ CG C ACP Sbjct: 1 MPHVITQSCCSDGSCVYACPVNCIHPSPDE---PGFATAEMLYIDPVACVDCGACVSACP 57 Query: 115 VDAI 118 V AI Sbjct: 58 VGAI 61 Score = 34.7 bits (78), Expect = 4.1, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 1/44 (2%) Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 + C G C ACPV+ I P+ E T + LY D Sbjct: 1 MPHVITQSCCSDGSCVYACPVNCIHPSPD-EPGFATAEMLYIDP 43 >gi|328943786|ref|ZP_08241251.1| pyruvate-ferredoxin oxidoreductase [Atopobium vaginae DSM 15829] gi|327491755|gb|EGF23529.1| pyruvate-ferredoxin oxidoreductase [Atopobium vaginae DSM 15829] Length = 1172 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 44/129 (34%), Gaps = 28/129 (21%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 +E G+ + RG + + + +CI C C +CP I + Sbjct: 666 YELGTAAYEKRGVAVMVPHWDE-TKCIQCNNCSFVCPHSTIRPIAMTEAEAAAAPAQMRM 724 Query: 98 ID----------------MIKCIYCGLCQEACPVDAIVEGP---------NFEFATETRQ 132 ID + C+ C C CP D + P +++A + + Sbjct: 725 IDAKGKGADGLKFAIAVSPLDCMGCTNCVYVCPKDCLTMVPTEQELDQQEVWDYAVD--E 782 Query: 133 ELYYDKERL 141 + +KE+L Sbjct: 783 DNVSEKEQL 791 >gi|70607938|ref|YP_256808.1| indolepyruvate ferredoxin oxidoreductase alpha [Sulfolobus acidocaldarius DSM 639] gi|68568586|gb|AAY81515.1| indolepyruvate ferredoxin oxidoreductase alpha [Sulfolobus acidocaldarius DSM 639] Length = 611 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 23/68 (33%), Gaps = 10/68 (14%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + L + +C C +C AI + ID+ CI CG C Sbjct: 538 NKLPKAVVDMAKCTGCTICYDYFTCPAIIPRKDKKAE----------IDVYNCIGCGACV 587 Query: 111 EACPVDAI 118 CP AI Sbjct: 588 PVCPFKAI 595 >gi|256545265|ref|ZP_05472630.1| pyruvate-ferredoxin oxidoreductase [Anaerococcus vaginalis ATCC 51170] gi|256399092|gb|EEU12704.1| pyruvate-ferredoxin oxidoreductase [Anaerococcus vaginalis ATCC 51170] Length = 1176 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 30/114 (26%), Positives = 41/114 (35%), Gaps = 20/114 (17%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTR- 91 FE G+T RG AL + CI C C +CP I T E +G Sbjct: 664 FEPGTTQYEKRG-IALNVPEWQIDNCIQCNQCSYVCPHAVIRPFLLTEEEKANAPEGFET 722 Query: 92 ----------RTVRYDIDMIKCIYCGLCQEAC--PVDAIVEGPNFEFATETRQE 133 R + + C CG C + C P A++ P FE E ++ Sbjct: 723 KKAIGKGMDGYDFRIQVSPLDCTGCGNCADVCPAPKKALLMKP-FEEEVEKEKD 775 >gi|297543967|ref|YP_003676269.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841742|gb|ADH60258.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 1175 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 52/143 (36%), Gaps = 31/143 (21%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTRRTV 94 G+ + RG + CI C C +CP AI T E +G + Sbjct: 667 PGTAAYEKRGIAVDVPEWQ-IDNCIQCNQCAFVCPHAAIRPFLLTEEEAKNAPEGFKVKK 725 Query: 95 -----------RYDIDMIKCIYCGLCQEACP--VDAIVEGP---------NFEFATE-TR 131 R + ++ C CG+C CP A+V P N+E+A + Sbjct: 726 AIGKGFEGLYYRIQVSVLDCTGCGVCANECPAKEKALVMKPLETQMEEAKNWEYAMTLSP 785 Query: 132 QELYYDKERLLNNGDRWESEIVR 154 +E +KE G ++E ++ Sbjct: 786 KENPMNKE--TVKGSQFEKPLLE 806 >gi|289577658|ref|YP_003476285.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter italicus Ab9] gi|289527371|gb|ADD01723.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter italicus Ab9] Length = 1175 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 52/143 (36%), Gaps = 31/143 (21%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTRRTV 94 G+ + RG + CI C C +CP AI T E +G + Sbjct: 667 PGTAAYEKRGIAVDVPEWQ-IDNCIQCNQCAFVCPHAAIRPFLLTEEEAKNAPEGFKVKK 725 Query: 95 -----------RYDIDMIKCIYCGLCQEACP--VDAIVEGP---------NFEFATE-TR 131 R + ++ C CG+C CP A+V P N+E+A + Sbjct: 726 AIGKGFEGLYYRIQVSVLDCTGCGVCANECPAKEKALVMKPLETQMEEAKNWEYAMTLSP 785 Query: 132 QELYYDKERLLNNGDRWESEIVR 154 +E +KE G ++E ++ Sbjct: 786 KENPMNKE--TVKGSQFEKPLLE 806 >gi|332140733|ref|YP_004426471.1| electron transport complex protein RnfB [Alteromonas macleodii str. 'Deep ecotype'] gi|327550755|gb|AEA97473.1| electron transport complex protein RnfB [Alteromonas macleodii str. 'Deep ecotype'] Length = 193 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 32/96 (33%), Gaps = 10/96 (10%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E E + E+ CI C C CP AI + + + Sbjct: 94 EPKPLDAAHGEEDVKKVAFIREDECIGCTKCIQACPVDAILGAAK----------HMHTV 143 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134 +C C LC + CPVD I P + + + + Sbjct: 144 ITDECTGCDLCVDPCPVDCIDMVPITQTTSTWKWDF 179 >gi|302871534|ref|YP_003840170.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit [Caldicellulosiruptor obsidiansis OB47] gi|302574393|gb|ADL42184.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit [Caldicellulosiruptor obsidiansis OB47] Length = 339 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 6/82 (7%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E+CI C LCE CP +G + + +D C C C + CP A++E Sbjct: 252 EKCINCGLCETTCPD--YVFVWDRIVENGKPKMINIGLDYQYCKGCLRCVDICPTGALIE 309 Query: 121 GPNFEFATET---RQEL-YYDK 138 G E+ E + + Y+K Sbjct: 310 GIEREYDMEKISAKHDFDIYEK 331 Score = 35.5 bits (80), Expect = 2.3, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 10/49 (20%) Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWE 149 KCI CGLC+ CP V E K +++N G ++ Sbjct: 252 EKCINCGLCETTCPDYVFVWDRIVEN----------GKPKMINIGLDYQ 290 >gi|253581620|ref|ZP_04858845.1| hydrogenase [Fusobacterium varium ATCC 27725] gi|251836690|gb|EES65225.1| hydrogenase [Fusobacterium varium ATCC 27725] Length = 644 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 15/76 (19%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E+CI C C +CP + I+ + R + +D +C +CG C ACPV AI E Sbjct: 221 EKCIGCTACARVCPVKCISGKIKER----------HILDTSRCTHCGQCVAACPVGAIFE 270 Query: 121 GPNF-----EFATETR 131 G + + AT R Sbjct: 271 GDHTMKLLKDLATPNR 286 >gi|218709479|ref|YP_002417100.1| hypothetical protein VS_1488 [Vibrio splendidus LGP32] gi|218322498|emb|CAV18657.1| Conserved hypothetical protein [Vibrio splendidus LGP32] Length = 553 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 36/102 (35%), Gaps = 9/102 (8%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + C C C A+CP +A+ + + CI CGLC++ACP + Sbjct: 415 CESKDCTLCMSCVAVCPTRALHTDGA---------SPSLKFVEQDCIQCGLCEKACPENV 465 Query: 118 IVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 + P + E RQ+ E R + D Sbjct: 466 LTLTPRMNWVKEERQKAVVIHEEKAAECLRCHKPFAPQSMID 507 Score = 38.2 bits (87), Expect = 0.37, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 6/53 (11%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C CPA A++ E + + +I+ C G C +CP +AI Sbjct: 186 CERCVDACPAGALSSEGSEKTGH------KIEINPYLCQGVGTCATSCPTEAI 232 >gi|167947207|ref|ZP_02534281.1| pyruvate ferredoxin/flavodoxin oxidoreductase family protein [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 468 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 26/89 (29%), Gaps = 24/89 (26%) Query: 58 NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY--DIDMI 101 + CI C C +CP A R RY I + Sbjct: 125 WEPDICIQCGNCSFVCPHSVIRSKFYHEKKLADAPDSFPSARISARGFPETRYTLQIYLE 184 Query: 102 KCIYCGLCQEACP--------VDAIVEGP 122 C CGLC EACP AI P Sbjct: 185 DCTGCGLCVEACPAYDFEDKTTKAINMKP 213 Score = 34.7 bits (78), Expect = 4.9, Method: Composition-based stats. Identities = 9/26 (34%), Positives = 9/26 (34%) Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFE 125 CI CG C CP I E Sbjct: 127 PDICIQCGNCSFVCPHSVIRSKFYHE 152 >gi|54027063|ref|YP_121305.1| putative ferredoxin reductase [Nocardia farcinica IFM 10152] gi|54018571|dbj|BAD59941.1| putative ferredoxin reductase [Nocardia farcinica IFM 10152] Length = 556 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 3/63 (4%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 +RC C + CP I T ID CI CG C +ACPV+AI Sbjct: 7 QRCCNDASCVSECPVDCIRPTPDQPE---FATTEMLYIDPDTCIDCGACVDACPVEAIFS 63 Query: 121 GPN 123 + Sbjct: 64 EDD 66 >gi|227831455|ref|YP_002833235.1| formate dehydrogenase, alpha subunit [Sulfolobus islandicus L.S.2.15] gi|227457903|gb|ACP36590.1| formate dehydrogenase, alpha subunit [Sulfolobus islandicus L.S.2.15] Length = 979 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQE 111 Y +CI C C C A+ R V + I C+ CG C Sbjct: 139 FYVYDPSQCILCGRCVEACQDFAVNEVIWINWDLNPPRVVWDNGNPIGNSSCVNCGTCVT 198 Query: 112 ACPVDAIVE 120 CPV+A++E Sbjct: 199 VCPVNALME 207 Score = 40.1 bits (92), Expect = 0.10, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 7/86 (8%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKL-------CEAICPAQAITIESGPRCHDGTRRTV 94 S R R + C C+ E++ + + + + Sbjct: 79 KRSMEARKTAISRILRYHKLYCSMCENNNGDCVLHESVIKLNINSQKYIEKPYQVDDSGP 138 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVE 120 Y D +CI CG C EAC A+ E Sbjct: 139 FYVYDPSQCILCGRCVEACQDFAVNE 164 >gi|90413851|ref|ZP_01221838.1| hypothetical iron-sulfur cluster-binding protein [Photobacterium profundum 3TCK] gi|90325162|gb|EAS41665.1| hypothetical iron-sulfur cluster-binding protein [Photobacterium profundum 3TCK] Length = 566 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 9/75 (12%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C C C A+CP +A G + CI CGLC++ACP + Sbjct: 432 DDCTLCMSCVAVCPTRAFHAVGGRPG---------LQLIEEDCIQCGLCEKACPEKVLTL 482 Query: 121 GPNFEFATETRQELY 135 P F + ETR+ Sbjct: 483 KPGFNWNAETRKAAV 497 Score = 34.7 bits (78), Expect = 5.0, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 11/53 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C CPA A++ +I+ C G C ACP +AI Sbjct: 200 CNRCVDACPAGALSSLGHA-----------IEINPYLCQGVGTCATACPTEAI 241 >gi|328887041|emb|CCA60280.1| Ferredoxin or Ferredoxin--NADP(+) reductase,actinobacterial (eukaryote) type [Streptomyces venezuelae ATCC 10712] Length = 552 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 26/72 (36%), Gaps = 5/72 (6%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C C A+CP I T ID CI CG C +ACPVDAI Sbjct: 7 QTCCNDATCVAVCPVNCIHPTPEEPD---FGTTEMLYIDPKSCIDCGACADACPVDAIFP 63 Query: 121 GPNFEFATETRQ 132 R+ Sbjct: 64 ADR--LTGRLRE 73 >gi|288574747|ref|ZP_06393104.1| NADH dehydrogenase (quinone) [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570488|gb|EFC92045.1| NADH dehydrogenase (quinone) [Dethiosulfovibrio peptidovorans DSM 11002] Length = 594 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 10/68 (14%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 AL RY +++C C LC CP I + R ++ ID C+ CG C Sbjct: 534 QALIRYRIDQDKCKKCGLCAKNCPVNCIDGD----------RKTQFVIDEDACVRCGTCY 583 Query: 111 EACPVDAI 118 + CP DAI Sbjct: 584 DKCPFDAI 591 Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats. Identities = 14/34 (41%), Positives = 18/34 (52%) Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + +RY ID KC CGLC + CPV+ I Sbjct: 528 CPAGACQALIRYRIDQDKCKKCGLCAKNCPVNCI 561 >gi|256829154|ref|YP_003157882.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Desulfomicrobium baculatum DSM 4028] gi|256578330|gb|ACU89466.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Desulfomicrobium baculatum DSM 4028] Length = 794 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 27/61 (44%), Gaps = 6/61 (9%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C +CEAICP AI+ E+ P D KCI CG C ACP P Sbjct: 736 CRDCGICEAICPRGAISREALPDNEFAM------VCDSEKCIGCGFCAGACPCGIWTLIP 789 Query: 123 N 123 N Sbjct: 790 N 790 >gi|187924671|ref|YP_001896313.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia phytofirmans PsJN] gi|187715865|gb|ACD17089.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia phytofirmans PsJN] Length = 413 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 11/68 (16%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 LR++ E CI C CE CP AIT + Y + C C C Sbjct: 8 EVLRQHLIDPEICIRCNTCEETCPVDAITHDDN-----------NYVVKAEICNGCMACV 56 Query: 111 EACPVDAI 118 CP AI Sbjct: 57 PPCPTGAI 64 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 14/26 (53%), Positives = 15/26 (57%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPN 123 ID CI C C+E CPVDAI N Sbjct: 15 IDPEICIRCNTCEETCPVDAITHDDN 40 >gi|238916679|ref|YP_002930196.1| putative pyruvate-flavodoxin oxidoreductase [Eubacterium eligens ATCC 27750] gi|238872039|gb|ACR71749.1| putative pyruvate-flavodoxin oxidoreductase [Eubacterium eligens ATCC 27750] Length = 1186 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 37/111 (33%), Gaps = 19/111 (17%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ--------------AITIESG 83 FE G+++ RG + C+ C C +C A + Sbjct: 673 FETGASAYEKRGTAVMVPEW-DPTACVQCNSCAFVCSHATIRPFILSTDEVNAAPSNIKL 731 Query: 84 PRCHDGTRRTVRYDID--MIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130 +T++Y + + C+ CG C CP +AI P A E Sbjct: 732 ADSKHAIDKTMKYTMSVSPLDCMGCGECVTVCPKAGEAIKMVPQESQADEQ 782 >gi|121535727|ref|ZP_01667530.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus carboxydivorans Nor1] gi|121305692|gb|EAX46631.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus carboxydivorans Nor1] Length = 147 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 9/68 (13%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 R+ RC C C A+C ++A+ +E R T KCI CGLC +AC Sbjct: 77 RQIQVDTGRCTHCGACTAVCFSRALVLE---------RPTWELSFHPDKCIVCGLCVQAC 127 Query: 114 PVDAIVEG 121 PV AI +G Sbjct: 128 PVRAIRQG 135 >gi|46200681|ref|ZP_00207795.1| COG0369: Sulfite reductase, alpha subunit (flavoprotein) [Magnetospirillum magnetotacticum MS-1] Length = 393 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 11/65 (16%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 R++ CI C CE CP AIT + Y + KC C C C Sbjct: 5 RQHLIDPVVCIRCNTCEEACPVDAITHDG-----------TNYVVSFDKCTGCRTCVSPC 53 Query: 114 PVDAI 118 P AI Sbjct: 54 PTGAI 58 Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats. Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%) Query: 98 IDMIKCIYCGLCQEACPVDAI-VEGPNFEFATET 130 ID + CI C C+EACPVDAI +G N+ + + Sbjct: 9 IDPVVCIRCNTCEEACPVDAITHDGTNYVVSFDK 42 >gi|297568110|ref|YP_003689454.1| FAD dependent oxidoreductase [Desulfurivibrio alkaliphilus AHT2] gi|296924025|gb|ADH84835.1| FAD dependent oxidoreductase [Desulfurivibrio alkaliphilus AHT2] Length = 680 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 27/87 (31%), Gaps = 8/87 (9%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P + A+R G C C +CE C AI+ Y Sbjct: 601 PVIPTAPPAATPESEAIRCVSCG--LCRDCHICENTCHYGAISRRDLGEGEF------EY 652 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPN 123 +D +CI CG C CP N Sbjct: 653 VVDPDRCIGCGFCAGTCPCGIWEMEEN 679 >gi|224013016|ref|XP_002295160.1| nadp-reducing hydrogenase [Thalassiosira pseudonana CCMP1335] gi|220969122|gb|EED87464.1| nadp-reducing hydrogenase [Thalassiosira pseudonana CCMP1335] Length = 585 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 30/70 (42%), Gaps = 2/70 (2%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACP 114 +CI C LC C AQ I G +D + + CI CG C CP Sbjct: 156 WRDMSKCIECGLCVDACSAQKINAIGFAERGSGMLPITAFDKPLSETGCISCGQCILRCP 215 Query: 115 VDAIVEGPNF 124 V A++E P++ Sbjct: 216 VGALIERPDW 225 >gi|134299396|ref|YP_001112892.1| electron transfer flavoprotein subunit beta [Desulfotomaculum reducens MI-1] gi|134052096|gb|ABO50067.1| electron transfer flavoprotein beta-subunit [Desulfotomaculum reducens MI-1] Length = 439 Score = 52.0 bits (123), Expect = 2e-05, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 10/63 (15%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C+ C CP +A+ + + KC+ CG C E CPV+A+ Sbjct: 9 CMGCQACITSCPHEALFMNDAG----------VCQVIPEKCVDCGECVEVCPVEALSSPK 58 Query: 123 NFE 125 N E Sbjct: 59 NTE 61 >gi|312880261|ref|ZP_07740061.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Aminomonas paucivorans DSM 12260] gi|310783552|gb|EFQ23950.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Aminomonas paucivorans DSM 12260] Length = 137 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 14/96 (14%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 +RG A +CI C+LC +CPA AI + + I Sbjct: 48 PVEPPEGYRGRIA-----YDRGKCIGCRLCIKVCPANAIEFVPEEK---------KIRIH 93 Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 + +C +C C E CPV + + R+E Sbjct: 94 VDRCCFCEQCTEICPVSCLWMTRECLVSGTDRREQV 129 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 18/55 (32%) Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 C + P R D KCI C LC + CP +AI P Sbjct: 32 CGFLRDVAEGKRSLCPPVEPPEGYRGRIAYDRGKCIGCRLCIKVCPANAIEFVPE 86 >gi|295707101|ref|YP_003600176.1| formate dehydrogenase subunit alpha [Bacillus megaterium DSM 319] gi|294804760|gb|ADF41826.1| formate dehydrogenase, alpha subunit [Bacillus megaterium DSM 319] Length = 979 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+ + + + Y +CIAC C +C + R Sbjct: 123 HQKYPY--TPKASENEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAKRPR 180 Query: 93 TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120 + D I+ C+ CG C CP +A++E Sbjct: 181 VLWDDGVAINESSCVSCGQCVTVCPCNALME 211 Score = 40.1 bits (92), Expect = 0.099, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 22/71 (30%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ A+ + IE + Y D + Sbjct: 91 RLLENHLLYCTVCDNNNGNCKLHNTAEMMEIEHQKYPYTPKASENEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|304315847|ref|YP_003850992.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777349|gb|ADL67908.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 1172 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 40/123 (32%), Gaps = 30/123 (24%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG + E+CI C C +CP A + Sbjct: 675 RGIAVMIPQWQ-IEKCIQCNQCSFVCPHAVIRPFLLNDEEAKNAPPTFETKKAVGRGLEA 733 Query: 94 VRYDID--MIKCIYCGLCQEACPVD--AIVEGP----------NFEFATE-TRQELYYDK 138 +Y I + C CG C + CP A+V P N+E+A + ++ +K Sbjct: 734 FQYRIQVSPLDCTGCGNCADVCPAPGKALVMMPAEGEIESQADNWEYAVKIKPKDNIMEK 793 Query: 139 ERL 141 L Sbjct: 794 TTL 796 >gi|260891188|ref|ZP_05902451.1| electron transport complex, RnfABCDGE type, C subunit [Leptotrichia hofstadii F0254] gi|260859215|gb|EEX73715.1| electron transport complex, RnfABCDGE type, C subunit [Leptotrichia hofstadii F0254] Length = 464 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 29/105 (27%), Gaps = 4/105 (3%) Query: 13 LKEFVGAFFLCLRY---FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69 L V + F I + G L CI+C C Sbjct: 338 LYHIVKRLKITNEEKVIFGGPMMGIEVFDSRVPVIKGTSGILFLSTEEIERNNCISCGYC 397 Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 CP + E G + ++ CI CG C+ CP Sbjct: 398 VEACPMNLMPFEFADYYEKG-KYEKMVKANIQNCIECGACEFVCP 441 Score = 38.5 bits (88), Expect = 0.33, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 17/61 (27%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNI 156 +I+ CI CG C EACP++ + FEFA Y+K ++E + NI Sbjct: 385 EIERNNCISCGYCVEACPMNLMP----FEFADY------YEK-------GKYEKMVKANI 427 Query: 157 V 157 Sbjct: 428 Q 428 >gi|254994329|ref|ZP_05276519.1| formate dehydrogenase alpha chain [Listeria monocytogenes FSL J2-064] Length = 679 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 3/85 (3%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E+ + + + Y ++CI C C C + R + D Sbjct: 34 ERPYREKGYLNDFSHPFYRYDPDQCILCGRCVEACQQVQVNETLSIDWERSQPRVIWDDD 93 Query: 99 DMIK---CIYCGLCQEACPVDAIVE 120 C+ CGLC CP +A++E Sbjct: 94 RPANLSSCVSCGLCATVCPCNALME 118 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 9/68 (13%) Query: 55 RYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCIY 105 N C C C+ + + +E R + Y D +CI Sbjct: 1 MLENHLLYCTVCDNNNGNCKVHNTTELLGVEKQERPYREKGYLNDFSHPFYRYDPDQCIL 60 Query: 106 CGLCQEAC 113 CG C EAC Sbjct: 61 CGRCVEAC 68 >gi|294501751|ref|YP_003565451.1| formate dehydrogenase subunit alpha [Bacillus megaterium QM B1551] gi|294351688|gb|ADE72017.1| formate dehydrogenase, alpha subunit [Bacillus megaterium QM B1551] Length = 979 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+ + + + Y +CIAC C +C + R Sbjct: 123 HQKYPY--TPKASENEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAKRPR 180 Query: 93 TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120 + D I+ C+ CG C CP +A++E Sbjct: 181 VLWDDGVAINESSCVSCGQCVTVCPCNALME 211 Score = 40.1 bits (92), Expect = 0.10, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 22/71 (30%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ A+ + IE + Y D + Sbjct: 91 RLLENHLLYCTVCDNNNGNCKLHNTAEMMEIEHQKYPYTPKASENEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|227499096|ref|ZP_03929233.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|226904545|gb|EEH90463.1| conserved hypothetical protein [Acidaminococcus sp. D21] Length = 1168 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 31/112 (27%), Gaps = 22/112 (19%) Query: 31 KTTINYPFEKGSTS-----PRFRGEHALRRYPNGEERCIACKLCEAICPA---------- 75 + P+ G RG N ++CI C +C +CP Sbjct: 652 PVSDFVPYSNGMFPQGTSRHEKRGTSVRVSSWN-PQKCIQCNMCSYVCPHAILRPMLLTE 710 Query: 76 ----QAITIESGPRCHDGTRRTVRYDIDMI--KCIYCGLCQEACPVDAIVEG 121 A R+ I + C CG C CPV A+ Sbjct: 711 EEVKGAPEGMKDIPAKGKDVEPYRFHIAVSTLDCTGCGSCANVCPVGAMEMS 762 >gi|254481381|ref|ZP_05094626.1| electron transport complex, RnfABCDGE type, C subunit subfamily, putative [marine gamma proteobacterium HTCC2148] gi|214038544|gb|EEB79206.1| electron transport complex, RnfABCDGE type, C subunit subfamily, putative [marine gamma proteobacterium HTCC2148] Length = 677 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 2/99 (2%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C +C CPA + + G ++ CI CG C CP I Sbjct: 367 QACIRCGMCAEACPAS-LLPQQLFWFSQGKEFEKAEQHNLFDCIECGACSFVCP-SNIPL 424 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 + A +L D E+ ++ R+E+ R D Sbjct: 425 VQYYRAAKAEVVQLRKDAEKSEHSRIRFEARQTRLERED 463 >gi|94967761|ref|YP_589809.1| pyruvate--ferredoxin (flavodoxin) oxidoreductase [Candidatus Koribacter versatilis Ellin345] gi|94549811|gb|ABF39735.1| Pyruvate--ferredoxin (flavodoxin) oxidoreductase [Candidatus Koribacter versatilis Ellin345] Length = 1208 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 25/85 (29%), Gaps = 16/85 (18%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTR 91 + AL E+ CI C C +CP A Sbjct: 678 WEKRNIALEIPVWDEQLCIQCGKCVLVCPHAVIRAKVFKTDYTKNAPETFKTAPAKWKDL 737 Query: 92 RTVRY--DIDMIKCIYCGLCQEACP 114 + Y + C CGLC EACP Sbjct: 738 KDQLYSLQVAPEDCTGCGLCVEACP 762 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 25/98 (25%), Gaps = 3/98 (3%) Query: 23 CLRYFF--KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80 L F K TT++ F+ P E L + + Sbjct: 614 TLANLFEVKVPTTVSSTFDMRPPVPTHAPEFVLNVLGPIIDGRGDDLPVSMMPVDGTFPT 673 Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + + D CI CG C CP I Sbjct: 674 ATALWEKRNIALEIPVW-DEQLCIQCGKCVLVCPHAVI 710 >gi|294102067|ref|YP_003553925.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Aminobacterium colombiense DSM 12261] gi|293617047|gb|ADE57201.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Aminobacterium colombiense DSM 12261] Length = 1186 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 16/78 (20%) Query: 61 ERCIACKLCEAICPAQAITI----------------ESGPRCHDGTRRTVRYDIDMIKCI 104 ++CI C C +CP AI + + + R + + C+ Sbjct: 692 DKCIQCNQCAMVCPHAAIRPVLLDEEEKKNAPATFATVEAKGKEFAGLSFRMQVSSLDCL 751 Query: 105 YCGLCQEACPVDAIVEGP 122 CG C + CPV A+ P Sbjct: 752 GCGNCVDICPVSALEMKP 769 >gi|224368284|ref|YP_002602447.1| HdrA1 [Desulfobacterium autotrophicum HRM2] gi|223691000|gb|ACN14283.1| HdrA1 [Desulfobacterium autotrophicum HRM2] Length = 1016 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 31/82 (37%), Gaps = 14/82 (17%) Query: 57 PNGEERCIACKLCEAICPAQAIT-------IESGPRCHDGTRRTVRYDIDMIKCI----- 104 E++CIAC LC CP + G ++Y ID CI Sbjct: 103 YVDEDKCIACGLCAEKCPKKVPDEYNEGLNYRKAAYIKYGQTVPLKYAIDPDNCIMINKG 162 Query: 105 YCGLCQEACPVDAIV--EGPNF 124 CG+C + CP AI P F Sbjct: 163 KCGVCAKICPTGAINFEMKPEF 184 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 3/58 (5%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C LC +CP A+T+ RR D C CG+C CP + I Sbjct: 941 QNCDGCALCLDVCPYNALTLVEFEENGKQHRRIKT---DRALCKGCGICAATCPKEGI 995 >gi|20808299|ref|NP_623470.1| MinD family protein [Thermoanaerobacter tengcongensis MB4] gi|20516902|gb|AAM25074.1| MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Thermoanaerobacter tengcongensis MB4] Length = 290 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 22/108 (20%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE-------ERCIACKLCEAICPA 75 L K K + E + + +GE + G+ ++CI C LCE +C Sbjct: 21 TLSTIVKNKIMADCDVEAPNLNIILQGEIVEKYDFYGKETAVIDKDKCIECGLCEELCRF 80 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 AI+ ++++ C CGLC CPV+AI Sbjct: 81 NAISN---------------FEVNPYYCEGCGLCMYKCPVEAIKMVEE 113 >gi|85707196|ref|ZP_01038282.1| NAD-dependent formate dehydrogenase, alpha subunit [Roseovarius sp. 217] gi|85668250|gb|EAQ23125.1| NAD-dependent formate dehydrogenase, alpha subunit [Roseovarius sp. 217] Length = 964 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 30/93 (32%), Gaps = 4/93 (4%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDID 99 + + + +CI C C C A+TI+ + D Sbjct: 166 PEWLPKDDSNPYFSYDPSKCIVCNRCVRACEEVQGTFALTIQGRGFDSRVSAGNAGDDFL 225 Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 C+ CG C +ACP + E E T R Sbjct: 226 ASDCVSCGACVQACPTATLQEKSIIELGTPDRS 258 >gi|146304084|ref|YP_001191400.1| formate dehydrogenase subunit alpha [Metallosphaera sedula DSM 5348] gi|145702334|gb|ABP95476.1| formate dehydrogenase, alpha subunit [Metallosphaera sedula DSM 5348] Length = 973 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 32/86 (37%), Gaps = 3/86 (3%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 F + + +++ Y +CI C C C A+ + R V Sbjct: 119 FHQRYVEKPYSLDNSGPFYVYDPAQCILCGRCVEACQDFAVNEVIWIDWNLNPPRVVWDQ 178 Query: 98 ---IDMIKCIYCGLCQEACPVDAIVE 120 I C+ CG C CPV+A++E Sbjct: 179 GNPIGNSSCVNCGTCVTVCPVNALME 204 Score = 40.5 bits (93), Expect = 0.077, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 28/84 (33%), Gaps = 7/84 (8%) Query: 44 SPRFRGEHALRRYPNGEERCIACKL-------CEAICPAQAITIESGPRCHDGTRRTVRY 96 S R E R + C C+ EA+ + + + Y Sbjct: 78 SKGARKEAISRILRYHKLYCTVCENNNGDCVLHEAVIKEKVFHQRYVEKPYSLDNSGPFY 137 Query: 97 DIDMIKCIYCGLCQEACPVDAIVE 120 D +CI CG C EAC A+ E Sbjct: 138 VYDPAQCILCGRCVEACQDFAVNE 161 >gi|37679887|ref|NP_934496.1| ferredoxin [Vibrio vulnificus YJ016] gi|37198632|dbj|BAC94467.1| ferredoxin [Vibrio vulnificus YJ016] Length = 557 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 35/104 (33%), Gaps = 12/104 (11%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T P E A+ G C C C A+CP +A+ + Sbjct: 396 ATSRVPVENTVALSSHAPYGAVSCATTG---CTLCMSCVAVCPTRALHTDGE-------- 444 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 + C+ CGLC +ACP + P + E+RQ Sbjct: 445 -SPSLQFVEQDCVQCGLCTKACPEQVLTLTPRMNWDKESRQAAV 487 Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 6/54 (11%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 C+ C CPA A+T + + +I+ C G C +CP +AI Sbjct: 190 CERCVDACPAGALTSQGSDKTGH------HIEINPYLCQGVGTCATSCPTEAIH 237 >gi|304315067|ref|YP_003850214.1| tungsten containing formylmethanofuran dehydrogenase, subunit F related protein [Methanothermobacter marburgensis str. Marburg] gi|302588526|gb|ADL58901.1| predicted tungsten containing formylmethanofuran dehydrogenase, subunit F related protein [Methanothermobacter marburgensis str. Marburg] Length = 332 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 30/74 (40%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R E+CI C C A+CP AI I +D KC+YCG Sbjct: 129 RKSLVKGEINVSMEKCIYCGECAAMCPVSAIEISWRDPDSSNMAIADGIRVDEDKCLYCG 188 Query: 108 LCQEACPVDAIVEG 121 +C+ CPV AI Sbjct: 189 ICKRICPVGAIRMS 202 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 4/81 (4%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---- 97 P RG + R +E+C+ C LC ++C AI ++ + G +D Sbjct: 40 PLLPIARGLIKMNRVSFNKEKCVLCGLCASVCIFGAIDLQKDGKSIRGADEYPFWDFKLE 99 Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID KC CG C +ACP +A+ Sbjct: 100 IDDEKCFLCGNCADACPRNAL 120 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 27/76 (35%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R R + C C LC CP AI I G + R + KC+ CG Sbjct: 6 RMGSERRTLNYNPDLCTGCGLCSETCPVDAIDIAPLLPIARGLIKMNRVSFNKEKCVLCG 65 Query: 108 LCQEACPVDAIVEGPN 123 LC C AI + Sbjct: 66 LCASVCIFGAIDLQKD 81 Score = 41.2 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 3/63 (4%) Query: 59 GEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 E++C+ C +C+ ICP AI + + KC +CG C E CP Sbjct: 180 DEDKCLYCGICKRICPVGAIRMSCLTCMYKEELKATVEGAVITIDEKCAHCGWCMEICPA 239 Query: 116 DAI 118 +AI Sbjct: 240 NAI 242 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 10/64 (15%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY--CGLCQEACPVDAI 118 E+C C C ICPA AIT++ R G +C C C + CP +AI Sbjct: 225 EKCAHCGWCMEICPANAITVKKPIRGTIGQA--------DERCRGESCHACVDVCPCNAI 276 Query: 119 VEGP 122 Sbjct: 277 SIIN 280 >gi|51894343|ref|YP_077034.1| iron hydrogenase beta subunit [Symbiobacterium thermophilum IAM 14863] gi|51858032|dbj|BAD42190.1| iron hydrogenase beta subunit [Symbiobacterium thermophilum IAM 14863] Length = 618 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 39/98 (39%), Gaps = 13/98 (13%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 LRY F+ + + + AL + +ERC AC +C CP A+ E Sbjct: 534 TLRY-FREEYEAHVRDKHCPAGRC----KALTDFRIDQERCKACNVCARNCPVDAVHGE- 587 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 R+ + ID CI CG C C +A+V Sbjct: 588 -------VRKPETFYIDAEACIKCGTCATVCKFNAVVW 618 >gi|187935649|ref|YP_001886506.1| dihydropyrimidine dehydrogenase [Clostridium botulinum B str. Eklund 17B] gi|187723802|gb|ACD25023.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum B str. Eklund 17B] Length = 412 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 7/94 (7%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 K + EE+C+ C C C A + +++ Sbjct: 322 KNIIPAEDLDREYIVYPKVDEEKCLGCGRCYISCYDGAHQAIK------WNAEERKPEVN 375 Query: 100 MIKCIYCGLCQEACPVDAIVEGPN-FEFATETRQ 132 +C+ C LC CPV AI +G F+ + R+ Sbjct: 376 KDRCVGCHLCALVCPVTAIGKGEIKFKNNGKERE 409 >gi|154502471|ref|ZP_02039531.1| hypothetical protein RUMGNA_00284 [Ruminococcus gnavus ATCC 29149] gi|153796867|gb|EDN79287.1| hypothetical protein RUMGNA_00284 [Ruminococcus gnavus ATCC 29149] Length = 506 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 33/68 (48%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQ 110 +E+CI C C+A+CP AI + P + + R ID KC+ CG+C Sbjct: 150 YIDQEKCIKCGKCKAVCPYDAIAKKERPCKNACGVGAIVSDKYGRAYIDTEKCVSCGMCM 209 Query: 111 EACPVDAI 118 +CP AI Sbjct: 210 VSCPFGAI 217 Score = 41.6 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 13/64 (20%) Query: 57 PNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 C C C +CP AI++ +G ID KCI CG C+ CP Sbjct: 119 YEVSNMCKGCLAHPCSEVCPKGAISMVNGKSY-----------IDQEKCIKCGKCKAVCP 167 Query: 115 VDAI 118 DAI Sbjct: 168 YDAI 171 >gi|186476296|ref|YP_001857766.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia phymatum STM815] gi|184192755|gb|ACC70720.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia phymatum STM815] Length = 416 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 24/68 (35%), Gaps = 11/68 (16%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 L+++ E CI C CE CP AI + Y + C C C Sbjct: 8 EVLKQHLIDPEICIRCNTCEETCPIDAIQHDD-----------TNYVVMPDVCNGCMACV 56 Query: 111 EACPVDAI 118 CP AI Sbjct: 57 PPCPTGAI 64 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 16/39 (41%) Query: 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 ++ ID CI C C+E CP+DAI Sbjct: 1 MNAPVSIEVLKQHLIDPEICIRCNTCEETCPIDAIQHDD 39 >gi|89900968|ref|YP_523439.1| putative glutamate synthase (NADPH) small subunit [Rhodoferax ferrireducens T118] gi|89345705|gb|ABD69908.1| 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate [Rhodoferax ferrireducens T118] Length = 541 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 9/62 (14%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C C +CP A+ + +D + C CG+C CP AI Sbjct: 487 NCFECDNCYGVCPDNAVIKHGPGKG---------FDFNYDYCKGCGICVSECPCGAIKMV 537 Query: 122 PN 123 P Sbjct: 538 PE 539 >gi|307265233|ref|ZP_07546791.1| Ferredoxin hydrogenase [Thermoanaerobacter wiegelii Rt8.B1] gi|306919677|gb|EFN49893.1| Ferredoxin hydrogenase [Thermoanaerobacter wiegelii Rt8.B1] Length = 513 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110 ++CI C C+ +CP AI+ P + + D I+ KC CG+C Sbjct: 131 HIDYDKCIECGRCKDVCPYNAISDTLRPCIRSCAAKAIIMDEELKAVINYEKCTSCGMCT 190 Query: 111 EACPVDAI 118 ACP AI Sbjct: 191 LACPFGAI 198 Score = 41.2 bits (95), Expect = 0.049, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 5/64 (7%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTR-----RTVRYDIDMIKCIYCGLCQEACPVDA 117 C C + + R R R ID KCI CG C++ CP +A Sbjct: 92 CEGCPIKRYRVTEACRGCLAHKCIEVCPRGAISIRDKRAHIDYDKCIECGRCKDVCPYNA 151 Query: 118 IVEG 121 I + Sbjct: 152 ISDT 155 >gi|307267360|ref|ZP_07548855.1| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter wiegelii Rt8.B1] gi|306917618|gb|EFN47897.1| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter wiegelii Rt8.B1] Length = 291 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 40/110 (36%), Gaps = 22/110 (20%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG-------EERCIACKLCEAIC 73 L K K + E + + +GE ++ G ++CI C LCE +C Sbjct: 19 ATTLSTIVKNKIMADCDVEAPNLNIVLQGEIIEKQDFYGKETAVIDRDKCIECGLCEELC 78 Query: 74 PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 AI+ +++ C CGLC CPV+AI Sbjct: 79 RFDAISN---------------FEVYPYYCEGCGLCMYKCPVEAIKLVEE 113 >gi|306821643|ref|ZP_07455241.1| NADH dehydrogenase (quinone) [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550388|gb|EFM38381.1| NADH dehydrogenase (quinone) [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 527 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 10/64 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E+CI C C +CP + I R + I +CI CG C EACPV Sbjct: 473 YYITEKCIGCTKCANVCPVKCIDGSIKKR----------HVITAQQCIKCGQCYEACPVH 522 Query: 117 AIVE 120 AI Sbjct: 523 AIEL 526 >gi|257463022|ref|ZP_05627425.1| hydrogenase, Fe-only [Fusobacterium sp. D12] Length = 652 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 31/85 (36%), Gaps = 10/85 (11%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 E G+ E+CI C C +CP + I R Sbjct: 200 EEHVEDLKCPAGQCIHLLKFKITEKCIGCTACARVCPVKCIAGAPKKRHF---------- 249 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 +D +C +CG C ACPV AI EG Sbjct: 250 LDTSRCTHCGQCVSACPVGAIFEGD 274 >gi|297544478|ref|YP_003676780.1| Ferredoxin hydrogenase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842253|gb|ADH60769.1| Ferredoxin hydrogenase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 506 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110 ++CI C C+ +CP AI+ P + + D I+ KC CG+C Sbjct: 131 HIDYDKCIECGRCKDVCPYNAISDTLRPCIRSCAAKAITMDEELKAVINYEKCTSCGMCT 190 Query: 111 EACPVDAI 118 ACP AI Sbjct: 191 LACPFGAI 198 Score = 41.2 bits (95), Expect = 0.050, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 5/64 (7%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTR-----RTVRYDIDMIKCIYCGLCQEACPVDA 117 C C + + R R R ID KCI CG C++ CP +A Sbjct: 92 CEGCPIKRYRVTEACRGCLAHKCIEVCPRGAISIRDKRAHIDYDKCIECGRCKDVCPYNA 151 Query: 118 IVEG 121 I + Sbjct: 152 ISDT 155 >gi|239995948|ref|ZP_04716472.1| electron transport complex protein RnfB [Alteromonas macleodii ATCC 27126] Length = 193 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 32/96 (33%), Gaps = 10/96 (10%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E E + E+ CI C C CP AI + + + Sbjct: 94 EPKPLDAAHGEEDVKKVAFIREDECIGCTKCIQACPVDAILGAAK----------HMHTV 143 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134 +C C LC + CPVD I P + + + + Sbjct: 144 ITDECTGCDLCVDPCPVDCIDMVPIAQTTSTWKWDF 179 >gi|228990944|ref|ZP_04150907.1| formate dehydrogenase [Bacillus pseudomycoides DSM 12442] gi|228768724|gb|EEM17324.1| formate dehydrogenase [Bacillus pseudomycoides DSM 12442] Length = 975 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+E + + Y +CIAC C +C + R Sbjct: 119 HQKYPYE--PKVDTSEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 176 Query: 93 TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120 + DI+ C+ CG C CP +A++E Sbjct: 177 VIWDDGVDINDSSCVSCGQCVTICPCNALME 207 Score = 40.1 bits (92), Expect = 0.12, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 87 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDTSEVDMSHPFYRYDPNQ 146 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 147 CIACGQCVEVC 157 >gi|167629239|ref|YP_001679738.1| hypothetical protein HM1_0833 [Heliobacterium modesticaldum Ice1] gi|167591979|gb|ABZ83727.1| conserved hypothetical protein [Heliobacterium modesticaldum Ice1] Length = 295 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 9/69 (13%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 R ++ CI C C +C AI + R + I C CG C + C Sbjct: 59 RSLTWNKDGCIFCGRCLKVCRFDAIKFD---------RSGPKQVISPFACEGCGCCVDVC 109 Query: 114 PVDAIVEGP 122 P +A P Sbjct: 110 PGEAFTLTP 118 >gi|91784371|ref|YP_559577.1| dihydropyrimidine dehydrogenase [Burkholderia xenovorans LB400] gi|91688325|gb|ABE31525.1| dihydropyrimidine dehydrogenase (NADP+) / dihydroorotate oxidase B, catalytic subunit [Burkholderia xenovorans LB400] Length = 444 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 8/75 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117 +++CI C LC C A + +++ +C+ C LC CPV Sbjct: 341 DQDKCIQCGLCHIACEDTAHQAIMKEKDGV-----RHFEVMDSECVGCNLCMHVCPVEQC 395 Query: 118 IVE--GPNFEFATET 130 I N E+A T Sbjct: 396 ITMERVDNGEYANWT 410 >gi|294637339|ref|ZP_06715635.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Edwardsiella tarda ATCC 23685] gi|291089496|gb|EFE22057.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Edwardsiella tarda ATCC 23685] Length = 964 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 24/83 (28%), Gaps = 16/83 (19%) Query: 50 EHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVR 95 AL E CI C C +CP A R Sbjct: 683 NIALEIPIWRPELCIQCGNCAFVCPHAAIRAKFYHQDRLTGAPDDFRSAPISARGFPETR 742 Query: 96 Y--DIDMIKCIYCGLCQEACPVD 116 Y + C CGLC EACPV Sbjct: 743 YTLQVYPEDCTGCGLCVEACPVR 765 Score = 37.4 bits (85), Expect = 0.63, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 19/51 (37%), Gaps = 13/51 (25%) Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWES 150 CI CG C CP AI R + Y ++RL D + S Sbjct: 693 PELCIQCGNCAFVCPHAAI------------RAKF-YHQDRLTGAPDDFRS 730 >gi|297570515|ref|YP_003691859.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Desulfurivibrio alkaliphilus AHT2] gi|296926430|gb|ADH87240.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Desulfurivibrio alkaliphilus AHT2] Length = 682 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 41/105 (39%), Gaps = 18/105 (17%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E+ + S R +RC+ C C +CP QA IE I Sbjct: 469 EEQAVSEARRCLECGNGARVTADRCVKCLNCVRLCPYQAPRIE------------QVALI 516 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLN 143 + +C+ CG+C ACP AI A T ++L + +LL Sbjct: 517 NRERCLACGICHGACPTGAIKM------AGGTPEQLAAELPQLLA 555 >gi|18976577|ref|NP_577934.1| glutamate synthase subunit alpha [Pyrococcus furiosus DSM 3638] gi|18892138|gb|AAL80329.1| glutamate synthase subunit alpha [Pyrococcus furiosus DSM 3638] Length = 502 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 41/107 (38%), Gaps = 14/107 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++RCI C C CP + ID KC+ C C CP DA+ Sbjct: 14 DDKRCIKCGACIYQCPFGVYKWNADKSD---------ITIDYTKCVGCQRCVVFCPTDAL 64 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT--DSPYR 163 + P + + Y+++E + + + E V T D PY+ Sbjct: 65 IVRP---YPGSYKPNAYWNREVISDIKRQAEGGGVLLTGTGNDKPYK 108 >gi|332973049|gb|EGK10986.1| iron-sulfur cluster-binding protein [Kingella kingae ATCC 23330] Length = 285 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 26/69 (37%), Gaps = 10/69 (14%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C C CP AI S + + + +C CGLC CPVD Sbjct: 73 WIDEAVCIGCTACIRACPVDAIMGASK----------LMHTVLADECTGCGLCVAPCPVD 122 Query: 117 AIVEGPNFE 125 I P E Sbjct: 123 CIYLQPTKE 131 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 15/43 (34%), Positives = 19/43 (44%) Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 A + + + V ID CI C C ACPVDAI+ Sbjct: 53 ATALHRETTSPQKSHQNVIAWIDEAVCIGCTACIRACPVDAIM 95 >gi|330834752|ref|YP_004409480.1| formate dehydrogenase, alpha subunit [Metallosphaera cuprina Ar-4] gi|329566891|gb|AEB94996.1| formate dehydrogenase, alpha subunit [Metallosphaera cuprina Ar-4] Length = 964 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY---DIDMIKCIYCGLCQE 111 Y +CI C C C A+ R V +I C+ CG C Sbjct: 127 FYVYDPNQCILCGRCVEACQDFAVNEVIWINWDLDPPRVVWDKGSNIGDSSCVNCGTCVT 186 Query: 112 ACPVDAIVE 120 CPV+A++E Sbjct: 187 VCPVNALME 195 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 22/55 (40%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C L A+ + + + + Y D +CI CG C EAC A+ E Sbjct: 98 CDLHNAVVKERTFRQDYLNKPYSQDSSGPFYVYDPNQCILCGRCVEACQDFAVNE 152 >gi|223984601|ref|ZP_03634728.1| hypothetical protein HOLDEFILI_02024 [Holdemania filiformis DSM 12042] gi|223963448|gb|EEF67833.1| hypothetical protein HOLDEFILI_02024 [Holdemania filiformis DSM 12042] Length = 628 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 36/96 (37%), Gaps = 14/96 (14%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 LR F+ + + ++ L Y E+C C +C CP AI+ Sbjct: 544 TLR-LFRDEYEAHVKEKRCPAGVC----KKLLHYSIDPEKCRKCSMCARNCPVGAISGVP 598 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 G + Y ID KCI CG C E C A+ Sbjct: 599 GQKP---------YVIDHDKCIKCGACMETCRFGAV 625 Score = 38.5 bits (88), Expect = 0.32, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 19/44 (43%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 ++ ++ + Y ID KC C +C CPV AI P Sbjct: 555 HVKEKRCPAGVCKKLLHYSIDPEKCRKCSMCARNCPVGAISGVP 598 >gi|86146002|ref|ZP_01064329.1| iron-sulfur cluster-binding protein [Vibrio sp. MED222] gi|85836207|gb|EAQ54338.1| iron-sulfur cluster-binding protein [Vibrio sp. MED222] Length = 553 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 36/102 (35%), Gaps = 9/102 (8%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + C C C A+CP +A+ + + CI CGLC++ACP + Sbjct: 415 CESKDCTLCMSCVAVCPTRALHTDGA---------SPSLKFVEQDCIQCGLCEKACPENV 465 Query: 118 IVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 + P + E RQ+ E R + D Sbjct: 466 LTLTPRMNWVKEERQKAVVIHEEKAAECLRCHKPFAPQSMID 507 Score = 37.4 bits (85), Expect = 0.73, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 6/53 (11%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C CPA A++ E + + +I+ C G C +CP +AI Sbjct: 186 CERCVDACPAGALSSEGSDKTGH------KIEINPYLCQGVGTCATSCPTEAI 232 >gi|328951911|ref|YP_004369245.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfobacca acetoxidans DSM 11109] gi|328452235|gb|AEB08064.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfobacca acetoxidans DSM 11109] Length = 262 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 1/65 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRT-VRYDIDMIKCIYCGLCQEACPVDA 117 + C+ C LC +C G RR +++ CI CG C E CP A Sbjct: 124 DMDLCVLCGLCVRVCQEAIGASAISFVGRGGNRRVSTPFEMHSEACIGCGACAEICPTGA 183 Query: 118 IVEGP 122 I Sbjct: 184 IRMED 188 >gi|257469186|ref|ZP_05633280.1| hydrogenase, Fe-only [Fusobacterium ulcerans ATCC 49185] gi|317063434|ref|ZP_07927919.1| hydrogenase [Fusobacterium ulcerans ATCC 49185] gi|313689110|gb|EFS25945.1| hydrogenase [Fusobacterium ulcerans ATCC 49185] Length = 644 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 10/62 (16%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E+CI C C +CP + I+ + R + +D +C +CG C ACPV AI E Sbjct: 221 EKCIGCTACARVCPVKCISGKIKER----------HILDTSRCTHCGQCVAACPVGAIFE 270 Query: 121 GP 122 G Sbjct: 271 GD 272 >gi|254247589|ref|ZP_04940910.1| Electron transport complex, RnfABCDGE type, B subunit [Burkholderia cenocepacia PC184] gi|124872365|gb|EAY64081.1| Electron transport complex, RnfABCDGE type, B subunit [Burkholderia cenocepacia PC184] Length = 342 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 22/66 (33%), Gaps = 10/66 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C LC CP AI + I C C LC CPVD Sbjct: 118 FIDENLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVASLCTGCDLCVPPCPVD 167 Query: 117 AIVEGP 122 I P Sbjct: 168 CIAMLP 173 >gi|153812810|ref|ZP_01965478.1| hypothetical protein RUMOBE_03217 [Ruminococcus obeum ATCC 29174] gi|149831170|gb|EDM86259.1| hypothetical protein RUMOBE_03217 [Ruminococcus obeum ATCC 29174] Length = 501 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 7/83 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRC------HDGTRRTVRYDIDMIKCIYCGLCQ 110 +++CI C C+A CP AI+ P G+ R I KC+ CG+C Sbjct: 146 YIDQDKCIKCGKCKAACPYDAISHNIRPCEQACGVKAIGSDEQGRASILEDKCVSCGMCM 205 Query: 111 EACPVDAI-VEGPNFEFATETRQ 132 +CP AI + F+ A R Sbjct: 206 VSCPFGAISDKSQIFQLAHALRG 228 Score = 41.6 bits (96), Expect = 0.039, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 13/62 (20%) Query: 61 ERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C C CP AI+++ G ID KCI CG C+ ACP DAI Sbjct: 119 NMCRGCVAHPCMQACPKGAISMKDGKSY-----------IDQDKCIKCGKCKAACPYDAI 167 Query: 119 VE 120 Sbjct: 168 SH 169 >gi|254974516|ref|ZP_05270988.1| iron-dependent hydrogenase [Clostridium difficile QCD-66c26] gi|255313641|ref|ZP_05355224.1| iron-dependent hydrogenase [Clostridium difficile QCD-76w55] gi|255516325|ref|ZP_05384001.1| iron-dependent hydrogenase [Clostridium difficile QCD-97b34] gi|255649424|ref|ZP_05396326.1| iron-dependent hydrogenase [Clostridium difficile QCD-37x79] gi|260682592|ref|YP_003213877.1| iron-dependent hydrogenase [Clostridium difficile CD196] gi|260686192|ref|YP_003217325.1| iron-dependent hydrogenase [Clostridium difficile R20291] gi|306519505|ref|ZP_07405852.1| iron-dependent hydrogenase [Clostridium difficile QCD-32g58] gi|260208755|emb|CBA61611.1| iron-dependent hydrogenase [Clostridium difficile CD196] gi|260212208|emb|CBE02900.1| iron-dependent hydrogenase [Clostridium difficile R20291] Length = 498 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 7/69 (10%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIKCIYCGLC 109 + C AC +C++ C AI+ P R T++ I CI CG C Sbjct: 138 YINHDLCKACGMCKSSCQYDAISEVVRPCKSVCPTGALDFNRNTMKAMIHEDNCINCGAC 197 Query: 110 QEACPVDAI 118 ACP AI Sbjct: 198 ISACPFGAI 206 >gi|14250934|emb|CAC39230.1| HymB protein [Eubacterium acidaminophilum] Length = 597 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 10/58 (17%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++CI C C +CP AI+ + ++ ID KCI CG C +ACPV+AI Sbjct: 547 DKCIGCTKCARVCPVTAISG----------KVKEKHVIDTDKCIKCGACMDACPVNAI 594 >gi|4972238|emb|CAB43933.1| pyruvate ferredoxin oxidoreductase [Clostridium pasteurianum] Length = 1175 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 34/102 (33%), Gaps = 20/102 (19%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG + ++CI C C ICP +A + Sbjct: 675 RGIAVMVPEWQ-IDKCIQCNQCAYICPHATVRSFLLNDEELSKAPDTFKTKKPVGKGLEE 733 Query: 94 VRY--DIDMIKCIYCGLCQEACPVD--AIVEGP-NFEFATET 130 + + I + C CG C + CP A++ P + E E+ Sbjct: 734 MHFKIQISPLDCTGCGNCADVCPAPGKALIMKPADHEIEMES 775 >gi|332797392|ref|YP_004458892.1| formate dehydrogenase subunit alpha [Acidianus hospitalis W1] gi|332695127|gb|AEE94594.1| formate dehydrogenase, alpha subunit [Acidianus hospitalis W1] Length = 977 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQE 111 Y +CI C C C A+ R + + I C+ CG C Sbjct: 136 FYIYDPSQCILCGRCVEACQDFAVNEVIWINWDLNPPRVIWDNGNPIGNSSCVNCGTCVT 195 Query: 112 ACPVDAIVE 120 CPV+A++E Sbjct: 196 VCPVNALME 204 Score = 38.9 bits (89), Expect = 0.22, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 7/86 (8%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKL-------CEAICPAQAITIESGPRCHDGTRRTV 94 + R R + C C+ EA+ + + + + Sbjct: 76 PRAVNARKTAISRILKYHKLYCSICENNNGDCVLHEAVIKLGINSQKYVEKPYSVDDTGP 135 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVE 120 Y D +CI CG C EAC A+ E Sbjct: 136 FYIYDPSQCILCGRCVEACQDFAVNE 161 >gi|325281874|ref|YP_004254416.1| Ferredoxin hydrogenase [Odoribacter splanchnicus DSM 20712] gi|324313683|gb|ADY34236.1| Ferredoxin hydrogenase [Odoribacter splanchnicus DSM 20712] Length = 471 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 34/66 (51%), Gaps = 6/66 (9%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEACP 114 E C++C LC+ +CP AI P + + D ID KCIYCG C +ACP Sbjct: 147 EDCVSCGLCQKVCPYHAIVYTPVPCEDVCPVKAISKDAEGVEHIDKEKCIYCGKCMQACP 206 Query: 115 VDAIVE 120 AI+E Sbjct: 207 YGAIME 212 Score = 41.6 bits (96), Expect = 0.035, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 5/68 (7%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-----IDMIKCIYCGLCQEACP 114 E C AC + E P + + + + I C+ CGLCQ+ CP Sbjct: 101 HEACSACIQSQYAVTNLCRGCEGRPCVMNCPKAAISFIGGKASISSEDCVSCGLCQKVCP 160 Query: 115 VDAIVEGP 122 AIV P Sbjct: 161 YHAIVYTP 168 >gi|297545414|ref|YP_003677716.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296843189|gb|ADH61705.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 1171 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 40/123 (32%), Gaps = 30/123 (24%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITI----ESGPRCHDGTRR----------- 92 RG L + CI C C +CP I E + T + Sbjct: 675 RGIAVLIPEWQ-IDNCIQCNQCSYVCPHAVIRPFLLTEEEMKKAPPTFKLKKAIGRGLEG 733 Query: 93 -TVRYDIDMIKCIYCGLCQEAC--PVDAIVEGP----------NFEFATE-TRQELYYDK 138 R + + C CG C + C P A++ P N+E+A ++ DK Sbjct: 734 LWYRIQVSPLDCTGCGNCADVCPAPTKALIMKPAEEQIEKEARNWEYAVTLDVKDNLVDK 793 Query: 139 ERL 141 L Sbjct: 794 TTL 796 >gi|288574064|ref|ZP_06392421.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569805|gb|EFC91362.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 354 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 11/73 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E+C+ C C CP +AI++ G ID CI CG C CP AI Sbjct: 190 DDEKCVGCGRCFRNCPVKAISMTGGKAV-----------IDKDVCIGCGECLTVCPASAI 238 Query: 119 VEGPNFEFATETR 131 + R Sbjct: 239 SLDWRTDVVQFHR 251 Score = 40.9 bits (94), Expect = 0.058, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 18/42 (42%) Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 + P + + R +D KC+ CG C CPV AI Sbjct: 171 MGCAPAEGKKEQHSARMSVDDEKCVGCGRCFRNCPVKAISMT 212 >gi|220931029|ref|YP_002507937.1| NADH dehydrogenase I subunit F [Halothermothrix orenii H 168] gi|219992339|gb|ACL68942.1| NADH dehydrogenase I subunit F [Halothermothrix orenii H 168] Length = 624 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 15/100 (15%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 L+Y F+ + + +K AL+ Y + C C LC CP AI+ Sbjct: 540 TTLKY-FRDEYEAHVKDKKCPAGVC----EALKSYKINPDLCKGCSLCARKCPVDAISG- 593 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 + + ID KCI CG C EAC +A+ G Sbjct: 594 ---------KVKEPFVIDQDKCIKCGACYEACKFNAVEVG 624 >gi|157363816|ref|YP_001470583.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO] gi|157314420|gb|ABV33519.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO] Length = 626 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 10/68 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 ++Y E+ C C LC CP AI E G Y ID KCI CGLC + Sbjct: 568 FKKYVVNEQLCKGCGLCAKSCPQNAIFGERGKP----------YKIDQEKCIKCGLCVQK 617 Query: 113 CPVDAIVE 120 C AI Sbjct: 618 CRFKAIEM 625 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 18/40 (45%) Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 +G +Y ++ C CGLC ++CP +AI Sbjct: 555 HLNGVCPSGTCVSFKKYVVNEQLCKGCGLCAKSCPQNAIF 594 >gi|85860375|ref|YP_462577.1| iron-sulfur cluster and nucleotide-binding protein [Syntrophus aciditrophicus SB] gi|85723466|gb|ABC78409.1| iron-sulfur cluster and nucleotide-binding protein [Syntrophus aciditrophicus SB] Length = 297 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 5/73 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ERCI C LC +C AI+ D ++ + C C LC ACP AI Sbjct: 64 DPERCIGCGLCMGLCRFGAISSSKNEAGRDAGELEKPC-VNPLLCEGCKLCVRACPEQAI 122 Query: 119 VEGPNFEFATETR 131 +FE + R Sbjct: 123 ----DFEPHIDGR 131 Score = 37.0 bits (84), Expect = 0.80, Method: Composition-based stats. Identities = 12/27 (44%), Positives = 13/27 (48%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPN 123 ID +CI CGLC C AI N Sbjct: 62 RIDPERCIGCGLCMGLCRFGAISSSKN 88 >gi|117925448|ref|YP_866065.1| glutamate synthase (NADPH) small subunit [Magnetococcus sp. MC-1] gi|117609204|gb|ABK44659.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Magnetococcus sp. MC-1] Length = 585 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 20/60 (33%), Gaps = 6/60 (10%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C C CP AIT G +C+ C +C E CP I G Sbjct: 529 MCFECNQCMLFCPQDAITKFK------GNAEGEVMFTYYERCVGCHICSEVCPTGYIDMG 582 >gi|90415121|ref|ZP_01223076.1| putative formate dehydrogenase, alpha subunit [Photobacterium profundum 3TCK] gi|90323766|gb|EAS40385.1| putative formate dehydrogenase, alpha subunit [Photobacterium profundum 3TCK] Length = 1385 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 10/70 (14%) Query: 59 GEERCIACKLCEAICPAQAITIE----------SGPRCHDGTRRTVRYDIDMIKCIYCGL 108 RCI+C C C +A+ S R Y + C+ CG Sbjct: 616 DANRCISCGQCVEACNEKAVHGTLSFAKNADGSSASRPECRPGFDKGYSMGDSNCVQCGA 675 Query: 109 CQEACPVDAI 118 C + CP A+ Sbjct: 676 CVQVCPTGAL 685 Score = 35.1 bits (79), Expect = 3.0, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 4/53 (7%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 Y G+ C+ C C +CP A+ + I C YCG+ Sbjct: 663 YSMGDSNCVQCGACVQVCPTGALVDKRDKSQGRIEMLKPVETI----CTYCGV 711 Score = 34.3 bits (77), Expect = 5.6, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 15/100 (15%) Query: 62 RCIACKL-----CEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110 RC+ C C+ A + ++ ++ D D +CI CG C Sbjct: 568 RCLECGCQANTDCKLRDYATEYDVAETELTNESCQKFHVDDSSEFIVFDANRCISCGQCV 627 Query: 111 EACPVDAIVEG----PNFEFATETRQELYYDKERLLNNGD 146 EAC A+ N + ++ +R E ++ + GD Sbjct: 628 EACNEKAVHGTLSFAKNADGSSASRPECRPGFDKGYSMGD 667 >gi|323483907|ref|ZP_08089282.1| hypothetical protein HMPREF9474_01031 [Clostridium symbiosum WAL-14163] gi|323693503|ref|ZP_08107710.1| ferredoxin hydrogenase [Clostridium symbiosum WAL-14673] gi|323402745|gb|EGA95068.1| hypothetical protein HMPREF9474_01031 [Clostridium symbiosum WAL-14163] gi|323502460|gb|EGB18315.1| ferredoxin hydrogenase [Clostridium symbiosum WAL-14673] Length = 484 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 26/68 (38%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110 ++C C C CP AI P + YD ID KCI CG C Sbjct: 126 FIDPDKCRECGKCATACPYNAIAHLERPCKKVCPVDAITYDEYGICVIDEKKCIQCGACI 185 Query: 111 EACPVDAI 118 +CP AI Sbjct: 186 HSCPFGAI 193 Score = 37.0 bits (84), Expect = 0.96, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 13/62 (20%) Query: 61 ERCIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C C++ CP AIT+ + ID KC CG C ACP +AI Sbjct: 99 DNCRKCMGKACQSSCPFGAITMGNNKAF-----------IDPDKCRECGKCATACPYNAI 147 Query: 119 VE 120 Sbjct: 148 AH 149 >gi|307297327|ref|ZP_07577133.1| cobyrinic acid ac-diamide synthase [Thermotogales bacterium mesG1.Ag.4.2] gi|306916587|gb|EFN46969.1| cobyrinic acid ac-diamide synthase [Thermotogales bacterium mesG1.Ag.4.2] Length = 291 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 12/63 (19%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI+C +CE C A+ R Y +D C CG+C CP DAI Sbjct: 65 DSCISCGICEKYCRFDAV------------IRGGPYSVDPYACEGCGMCVAVCPADAITL 112 Query: 121 GPN 123 N Sbjct: 113 KDN 115 >gi|302393028|ref|YP_003828848.1| NADH dehydrogenase (quinone) [Acetohalobium arabaticum DSM 5501] gi|302205105|gb|ADL13783.1| NADH dehydrogenase (quinone) [Acetohalobium arabaticum DSM 5501] Length = 598 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 10/63 (15%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 + C C C CPA AI+ E+ + + ID+ +CI CG C + CP Sbjct: 543 DYKITDDCEGCTKCVDECPADAISGEAKEQ----------HTIDVDECIKCGACVDVCPF 592 Query: 116 DAI 118 DAI Sbjct: 593 DAI 595 >gi|228997025|ref|ZP_04156656.1| formate dehydrogenase [Bacillus mycoides Rock3-17] gi|228762650|gb|EEM11566.1| formate dehydrogenase [Bacillus mycoides Rock3-17] Length = 979 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+E + + Y +CIAC C +C + R Sbjct: 123 HQKYPYE--PKVDASEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 180 Query: 93 TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120 + DI+ C+ CG C CP +A++E Sbjct: 181 VIWDDGVDINDSSCVSCGQCVTICPCNALME 211 Score = 40.1 bits (92), Expect = 0.10, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 91 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDASEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|27365883|ref|NP_761411.1| Iron-sulfur cluster-binding protein [Vibrio vulnificus CMCP6] gi|27362032|gb|AAO10938.1| Iron-sulfur cluster-binding protein [Vibrio vulnificus CMCP6] Length = 552 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 35/104 (33%), Gaps = 12/104 (11%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T P E A+ G C C C A+CP +A+ + Sbjct: 391 ATSRVPVENIVALSSHAPYGAVSCATTG---CTLCMSCVAVCPTRALHTDGE-------- 439 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 + C+ CGLC +ACP + P + E+RQ Sbjct: 440 -SPSLQFVEQDCVQCGLCTKACPEQVLTLTPRMNWDKESRQAAV 482 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 24/54 (44%), Gaps = 6/54 (11%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 C+ C CPA A++ + + R +I+ C G C +CP +AI Sbjct: 185 CERCVDACPAGALSSQGSEKTGH------RIEINPYLCQGVGTCATSCPTEAIH 232 >gi|326391175|ref|ZP_08212720.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter ethanolicus JW 200] gi|325992808|gb|EGD51255.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter ethanolicus JW 200] Length = 1170 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 40/123 (32%), Gaps = 30/123 (24%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITI----ESGPRCHDGTRR----------- 92 RG L + CI C C +CP I E + T + Sbjct: 674 RGIAVLIPEWQ-IDNCIQCNQCSYVCPHAVIRPFLLTEEEMKKAPPTFKLKKAIGRGLEG 732 Query: 93 -TVRYDIDMIKCIYCGLCQEAC--PVDAIVEGP----------NFEFATE-TRQELYYDK 138 R + + C CG C + C P A++ P N+E+A ++ DK Sbjct: 733 LWYRIQVSPLDCTGCGNCADVCPAPTKALIMKPAEEQIEKEARNWEYAVTLDVKDNLVDK 792 Query: 139 ERL 141 L Sbjct: 793 TTL 795 >gi|213855566|ref|ZP_03383806.1| formate hydrogenlyase complex iron-sulfur subunit [Salmonella enterica subsp. enterica serovar Typhi str. M223] Length = 88 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 25/65 (38%) Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRN 155 ++ ++ CI+CG C+E CP AI +E A +++ L N Sbjct: 4 WEFNLGHCIFCGRCEEVCPTAAIKLSQEYELAVWKKEDFLQQSRFALCNCRVCNRPFAVQ 63 Query: 156 IVTDS 160 D Sbjct: 64 KEIDY 68 >gi|323706136|ref|ZP_08117705.1| Ferredoxin hydrogenase [Thermoanaerobacterium xylanolyticum LX-11] gi|323534580|gb|EGB24362.1| Ferredoxin hydrogenase [Thermoanaerobacterium xylanolyticum LX-11] Length = 504 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110 ++CI C C+ CP AI+ P + + + D I+ KC CG C Sbjct: 131 NIDYDKCIECGRCKDACPYNAISDNLRPCIRSCSAKAITMDEELKAAINYEKCTSCGACT 190 Query: 111 EACPVDAI 118 ACP AI Sbjct: 191 VACPFGAI 198 >gi|319893259|ref|YP_004150134.1| Formate dehydrogenase related protein [Staphylococcus pseudintermedius HKU10-03] gi|317162955|gb|ADV06498.1| Formate dehydrogenase related protein [Staphylococcus pseudintermedius HKU10-03] gi|323463694|gb|ADX75847.1| formate dehydrogenase, alpha subunit [Staphylococcus pseudintermedius ED99] Length = 978 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 29/95 (30%), Gaps = 7/95 (7%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 K G Y +CI C C +C + R + + Sbjct: 126 EYKPKPYEVDFGPF----YRYDPNQCILCGRCVEVCQDVQVNETLSIDWDREHPRVIWDN 181 Query: 98 ---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 I+ C+ CG C CP +A++E A Sbjct: 182 DVSINDSSCVGCGQCATVCPCNAMMENNMVGNAGY 216 Score = 40.5 bits (93), Expect = 0.075, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 18/68 (26%), Gaps = 8/68 (11%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIE----SGPRCHDGTRRTVRYDIDMIKCIY 105 R + C C CE +E Y D +CI Sbjct: 90 RILEKHQLYCTVCDYNNGNCEIHNTMDQWGLEHQTYEYKPKPYEVDFGPFYRYDPNQCIL 149 Query: 106 CGLCQEAC 113 CG C E C Sbjct: 150 CGRCVEVC 157 >gi|254171957|ref|ZP_04878633.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Thermococcus sp. AM4] gi|214033853|gb|EEB74679.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Thermococcus sp. AM4] Length = 648 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 28/79 (35%), Gaps = 9/79 (11%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R Y E++C CK+C AI ++ + ID C CG Sbjct: 579 REGKQWPLYQVNEDKCTGCKICINAYGCPAIYWDAEKKKA---------KIDPTMCWGCG 629 Query: 108 LCQEACPVDAIVEGPNFEF 126 C + CP DA + E Sbjct: 630 GCAQVCPFDAFEKVREGEL 648 >gi|94448907|emb|CAJ44288.1| NADH dehydrogenase (ubiquinone) [Heliobacillus mobilis] Length = 846 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 39/97 (40%), Gaps = 13/97 (13%) Query: 23 CLRYFFKA-KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 LR+F + I EK + +Y E+C C LC +CP +AI+ Sbjct: 756 TLRHFRHEYEAHIK---EKRCPAGVCPALKPKGKYRIDGEKCRRCGLCVKVCPVKAIS-- 810 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 G R + ID CI CG C + CPV I Sbjct: 811 -------GEIRKTPFAIDAKLCIACGACAQKCPVHVI 840 >gi|319644919|ref|ZP_07999152.1| YrhE protein [Bacillus sp. BT1B_CT2] gi|317392728|gb|EFV73522.1| YrhE protein [Bacillus sp. BT1B_CT2] Length = 979 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 4/89 (4%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+ + + Y +CIAC C +C + R + Sbjct: 125 KYPYTPKEDPSCAV-DMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWERERPRVI 183 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 + I+ C+ CG C CP +A++E Sbjct: 184 WDEGVSINESSCVSCGQCVTVCPCNALME 212 >gi|302335002|ref|YP_003800209.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Olsenella uli DSM 7084] gi|301318842|gb|ADK67329.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Olsenella uli DSM 7084] Length = 423 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 30/103 (29%), Gaps = 16/103 (15%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 LR C C C CP A ++ + ++ C+ CG C Sbjct: 312 ELRVPVCDPTLCTMCGACVTACPPHACDLDERG----------HFSVEPAYCVNCGACAT 361 Query: 112 ACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVR 154 CP A+ P Q+L E E + + Sbjct: 362 VCPEHALAMEPC------DPQDLVIRDEEAERRRKAAERQRAQ 398 Score = 34.7 bits (78), Expect = 4.2, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 21/66 (31%), Gaps = 12/66 (18%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 C+ C +CP AI I C CGLC CP +A+ Sbjct: 69 CRRCLDVCPVDAIEIGESSVRV------------ADGCRKCGLCTMVCPTEALPVQRIMA 116 Query: 126 FATETR 131 A + Sbjct: 117 KALYDK 122 >gi|149374944|ref|ZP_01892717.1| formate dehydrogenase, alpha subunit [Marinobacter algicola DG893] gi|149360833|gb|EDM49284.1| formate dehydrogenase, alpha subunit [Marinobacter algicola DG893] Length = 956 Score = 52.0 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 4/95 (4%) Query: 29 KAKTTINYPFEKGSTSPRFRGEHA-LRRYPNGEERCIACKLCEAICP-AQAITIESGPRC 86 + T+++ + ST P RG+ A + CI C LCE C Q + Sbjct: 140 RKTPTVHHVEPRSSTLPHARGQDATHSAMNVNLDACITCGLCERACREVQGNDVIGLAHR 199 Query: 87 HDGTRRTVRYDIDMIK--CIYCGLCQEACPVDAIV 119 ++ +D M C+ CG C +ACP A++ Sbjct: 200 GAASKVIFDFDDPMGDSTCVACGECVQACPTGALM 234 >gi|327400970|ref|YP_004341809.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein [Archaeoglobus veneficus SNP6] gi|327316478|gb|AEA47094.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Archaeoglobus veneficus SNP6] Length = 127 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 10/62 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 EE+CI C C +ICP +AI + + I+ KCI+CG C CPV A+ Sbjct: 75 DEEKCIHCGACISICPVEAIELNGEKKVV----------INASKCIHCGNCVNVCPVKAL 124 Query: 119 VE 120 Sbjct: 125 KL 126 >gi|312793902|ref|YP_004026825.1| pyruvate/ketoisovalerate oxidoreductase subunit gamma [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181042|gb|ADQ41212.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit [Caldicellulosiruptor kristjanssonii 177R1B] Length = 339 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 8/91 (8%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E+CI C LCE CP R +G + D C C C + CP A+VE Sbjct: 252 EKCINCGLCETTCPD--YVFVWDRRIENGKLKMFNLGPDYQYCKGCLRCVDICPTGALVE 309 Query: 121 GPNFEFATET---RQEL-YYDKERLLNNGDR 147 G E+ E + + Y+K +G++ Sbjct: 310 GIEREYDIEKISAKHDFDIYEKW--YEDGEK 338 >gi|304317218|ref|YP_003852363.1| ferredoxin hydrogenase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778720|gb|ADL69279.1| Ferredoxin hydrogenase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 504 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 6/71 (8%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCG 107 R+ ++CI C C+ CP AI+ P + + D I+ KC CG Sbjct: 128 RKSHIDYDKCIECGRCKEACPYNAISDNLRPCIRSCAAKAITMDEELKASINYEKCTSCG 187 Query: 108 LCQEACPVDAI 118 C ACP AI Sbjct: 188 ACTLACPFGAI 198 Score = 41.2 bits (95), Expect = 0.042, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 34/103 (33%), Gaps = 20/103 (19%) Query: 18 GAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIAC--KLCEAICPA 75 ++Y + E E + E C C C +CP Sbjct: 68 KNLKRTMKYAIEG-------EEPVIQVLDIACEECPIKRYRVTEACRGCITHRCTEVCPK 120 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 AI+I ID KCI CG C+EACP +AI Sbjct: 121 GAISIIDRKSH-----------IDYDKCIECGRCKEACPYNAI 152 >gi|253688410|ref|YP_003017600.1| electron transport complex, RnfABCDGE type, C subunit [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259494051|sp|C6DH15|RNFC_PECCP RecName: Full=Electron transport complex protein rnfC gi|251754988|gb|ACT13064.1| electron transport complex, RnfABCDGE type, C subunit [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 747 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 32/103 (31%), Gaps = 12/103 (11%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ CI C C CPA + + G + + CI CG C CP Sbjct: 373 EEQSCIRCSQCADACPAG-LLPQQLYWFSRGQEHEKARNHHLFDCIECGACAYVCP---- 427 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161 N RQE K + + + + D+ Sbjct: 428 ---SNIPLVQYYRQE----KAEIRAIDEDAQRAAQAKVRFDAK 463 >gi|251777769|ref|ZP_04820689.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082084|gb|EES47974.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 412 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 7/94 (7%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 K + EE+C+ C C C A + +++ Sbjct: 322 KNIIPAEDLDREYIVYPEVDEEKCLGCGRCYISCYDGAHQAIK------WNSEERKPEVN 375 Query: 100 MIKCIYCGLCQEACPVDAIVEGPN-FEFATETRQ 132 +C+ C LC CPV AI +G F+ + R+ Sbjct: 376 KDRCVGCHLCALVCPVTAIGKGEIKFKNNGKERE 409 >gi|187924666|ref|YP_001896308.1| dihydropyrimidine dehydrogenase [Burkholderia phytofirmans PsJN] gi|187715860|gb|ACD17084.1| dihydroorotate dehydrogenase family protein [Burkholderia phytofirmans PsJN] Length = 444 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 8/75 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117 +++CI C LC C A + +++ +C+ C LC CPV Sbjct: 341 DQDKCIQCGLCHIACEDTAHQAIMKEKDGV-----RHFEVMDSECVGCNLCMHVCPVEQC 395 Query: 118 IVE--GPNFEFATET 130 I N E+A T Sbjct: 396 ISMERVDNGEYANWT 410 >gi|54302442|ref|YP_132435.1| putative formate dehydrogenase, alphasubunit [Photobacterium profundum SS9] gi|46915864|emb|CAG22635.1| putative formate dehydrogenase, alphasubunit [Photobacterium profundum SS9] Length = 1394 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 10/70 (14%) Query: 59 GEERCIACKLCEAICPAQAITIE----------SGPRCHDGTRRTVRYDIDMIKCIYCGL 108 RCI+C C C +A+ S R Y + C+ CG Sbjct: 625 DANRCISCGQCVEACNEKAVHGTLSFAKNADGSSASRPECRPGFDKGYSMGDSNCVQCGA 684 Query: 109 CQEACPVDAI 118 C + CP A+ Sbjct: 685 CVQVCPTGAL 694 Score = 35.1 bits (79), Expect = 3.1, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 4/53 (7%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 Y G+ C+ C C +CP A+ + I C YCG+ Sbjct: 672 YSMGDSNCVQCGACVQVCPTGALVDKRDKSQGRIEMLKPVETI----CTYCGV 720 Score = 34.3 bits (77), Expect = 5.8, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 15/100 (15%) Query: 62 RCIACKL-----CEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110 RC+ C C+ A + ++ ++ D D +CI CG C Sbjct: 577 RCLECGCQANTDCKLRDYATEYDVAETELTNESCQKFHVDDSSEFIVFDANRCISCGQCV 636 Query: 111 EACPVDAIVEG----PNFEFATETRQELYYDKERLLNNGD 146 EAC A+ N + ++ +R E ++ + GD Sbjct: 637 EACNEKAVHGTLSFAKNADGSSASRPECRPGFDKGYSMGD 676 >gi|300814154|ref|ZP_07094437.1| electron transport complex, RnfABCDGE type, B subunit [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511811|gb|EFK39028.1| electron transport complex, RnfABCDGE type, B subunit [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 317 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 32/91 (35%), Gaps = 11/91 (12%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 P++ + + N CI+CK+CE CP AI +E Sbjct: 184 KGIIKLVPYKSKTVVKCMSNDVGKIVRANCNIGCISCKMCEKNCPKDAIHVEDNLA---- 239 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ID KCI CG C CP AI Sbjct: 240 -------RIDYEKCINCGKCVSVCPTGAIFC 263 Score = 33.5 bits (75), Expect = 9.1, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 5/70 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCIYCGLCQEAC 113 +E+C+AC C ICP I + + I CI C +C++ C Sbjct: 168 DKEKCVACMKCINICPKGIIKLVPYKSKTVVKCMSNDVGKIVRANCNIGCISCKMCEKNC 227 Query: 114 PVDAIVEGPN 123 P DAI N Sbjct: 228 PKDAIHVEDN 237 >gi|282882923|ref|ZP_06291528.1| electron transport complex, rnfaBcdge type, b subunit [Peptoniphilus lacrimalis 315-B] gi|281297334|gb|EFA89825.1| electron transport complex, rnfaBcdge type, b subunit [Peptoniphilus lacrimalis 315-B] Length = 317 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 32/91 (35%), Gaps = 11/91 (12%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 P++ + + N CI+CK+CE CP AI +E Sbjct: 184 KGIIKLVPYKSKTVVKCMSNDVGKIVRANCNIGCISCKMCEKNCPKDAIHVEDNLA---- 239 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ID KCI CG C CP AI Sbjct: 240 -------RIDYEKCINCGKCVSVCPTGAIFC 263 Score = 33.5 bits (75), Expect = 9.0, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 5/70 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCIYCGLCQEAC 113 +E+C+AC C ICP I + + I CI C +C++ C Sbjct: 168 DKEKCVACMKCINICPKGIIKLVPYKSKTVVKCMSNDVGKIVRANCNIGCISCKMCEKNC 227 Query: 114 PVDAIVEGPN 123 P DAI N Sbjct: 228 PKDAIHVEDN 237 >gi|255502232|gb|ACU11597.1| HfsD [Thermoanaerobacterium saccharolyticum] Length = 495 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110 ++CI C C+ CP AI+ P + + + D I+ KC CG C Sbjct: 122 NIDYDKCIECGRCKDACPYNAISDNLRPCIRSCSAKAITMDEELKAAINYEKCTSCGACT 181 Query: 111 EACPVDAI 118 ACP AI Sbjct: 182 LACPFGAI 189 >gi|297620125|ref|YP_003708230.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanococcus voltae A3] gi|297379102|gb|ADI37257.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus voltae A3] Length = 419 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 40/113 (35%), Gaps = 14/113 (12%) Query: 9 SFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKL 68 S +L EFV + + K E R+R + + + CI+C Sbjct: 4 SIWYLYEFVR------KKWLKRFANAKTEKEAYVPPERYR---RIPVSIDQPDNCISCNG 54 Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C CP++AI ++ CI CG C E CP + +G Sbjct: 55 CYQSCPSEAIEMQYSEEYGKNLPVF-----FPGSCIACGNCVETCPTGVLEQG 102 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 12/79 (15%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + Y +E C+ C C ICP AIT E+ Y I C+ C C Sbjct: 116 PKINNYIIDDELCVKCDSCRRICPVNAITYENN-----------VYRIKSNDCVGCNRCA 164 Query: 111 EACPV-DAIVEGPNFEFAT 128 ACPV +AI +E + Sbjct: 165 TACPVENAIKSYNEYELSE 183 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 10/68 (14%) Query: 54 RRYPNGEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 Y E++CI C++C C AI+I S I+ C+ CGLC Sbjct: 310 NCYIINEDKCIGCRICSKACNVENAISISSETNMPY---------INPDYCVRCGLCHRE 360 Query: 113 CPVDAIVE 120 CPVDAI Sbjct: 361 CPVDAIDF 368 Score = 42.4 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 4/65 (6%) Query: 63 CIACKLCEAICPAQAITI----ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CIAC C CP + + + + Y ID C+ C C+ CPV+AI Sbjct: 84 CIACGNCVETCPTGVLEQGTLRKEAKQYIWTVPKINNYIIDDELCVKCDSCRRICPVNAI 143 Query: 119 VEGPN 123 N Sbjct: 144 TYENN 148 Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 16/60 (26%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C C +CP + ++++++C+ CGLC E CP AI G Sbjct: 257 CIKCNNCVDVCP----------------GKIDLNELNVLECVKCGLCIEVCPTTAIRTGK 300 Score = 34.3 bits (77), Expect = 6.5, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 21/53 (39%) Query: 74 PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 A A T + + RR CI C C ++CP +AI + E+ Sbjct: 20 FANAKTEKEAYVPPERYRRIPVSIDQPDNCISCNGCYQSCPSEAIEMQYSEEY 72 >gi|312877401|ref|ZP_07737366.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit [Caldicellulosiruptor lactoaceticus 6A] gi|311795875|gb|EFR12239.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit [Caldicellulosiruptor lactoaceticus 6A] Length = 339 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 38/91 (41%), Gaps = 8/91 (8%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E+CI C LCE CP R +G + D C C C + CP A+VE Sbjct: 252 EKCINCGLCETTCPD--YVFVWDRRIENGKLKMFNLGPDYQYCKGCLRCVDICPTGALVE 309 Query: 121 GPNFEFATET---RQEL-YYDKERLLNNGDR 147 G E+ E + + Y+K +G++ Sbjct: 310 GIEREYDIEKISAKHDFDIYEKW--YEDGEK 338 >gi|291165831|gb|EFE27878.1| Fe-hydrogenase large subunit family protein [Filifactor alocis ATCC 35896] Length = 498 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQ 110 +E+CI C C+ CP AI P G+ R ID KC+ CG C Sbjct: 145 HIDKEKCIKCGKCKEACPYNAIIQYDRPCAEACGVNAIGSDEYGRALIDHDKCVSCGQCM 204 Query: 111 EACPVDAI 118 CP AI Sbjct: 205 AHCPFGAI 212 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 32/92 (34%), Gaps = 13/92 (14%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACK--LCEAICPAQAITIESGPRCHDGT 90 T F + C C C +CP AIT+ Sbjct: 90 TERVYEAPLVNVIPFACNACPTKALEVTSTCRQCMAHPCIQVCPVGAITMGE-------- 141 Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + ID KCI CG C+EACP +AI++ Sbjct: 142 ---TQTHIDKEKCIKCGKCKEACPYNAIIQYD 170 >gi|288919210|ref|ZP_06413547.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Frankia sp. EUN1f] gi|288349380|gb|EFC83620.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Frankia sp. EUN1f] Length = 1175 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 27/81 (33%), Gaps = 16/81 (19%) Query: 58 NGEERCIACKLCEAICPAQAITI----------------ESGPRCHDGTRRTVRYDIDMI 101 E C++C C +CP AI + + P+ + + Sbjct: 682 WDAELCVSCGKCAIVCPHAAIRMTLFDPARLADAPATFRHTRPKDPRLGDYRLTIQVAPD 741 Query: 102 KCIYCGLCQEACPVDAIVEGP 122 C CG+C EACP + Sbjct: 742 DCTGCGVCVEACPAKSREMPD 762 >gi|149920708|ref|ZP_01909173.1| putative carbamoyl transferase [Plesiocystis pacifica SIR-1] gi|149818495|gb|EDM77944.1| putative carbamoyl transferase [Plesiocystis pacifica SIR-1] Length = 1178 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 31/85 (36%), Gaps = 12/85 (14%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 + T A ERC C +CE +CP + PR ++ Sbjct: 232 RRPTVASLHRAKADAPVRVDPERCDGCGVCERLCPVDFLDGLGQPRAG----------LE 281 Query: 100 MIKCIYCGLCQEACPVDAIVEGPNF 124 CI C +C EACP DA P + Sbjct: 282 PDACIRCQVCVEACPTDA--MRPVY 304 >gi|302670217|ref|YP_003830177.1| iron-only hydrogenase [Butyrivibrio proteoclasticus B316] gi|302394690|gb|ADL33595.1| iron-only hydrogenase [Butyrivibrio proteoclasticus B316] Length = 490 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 26/71 (36%), Gaps = 6/71 (8%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCG 107 +C C C A CP AI P + YD ID KCI CG Sbjct: 124 THMHIDPAKCKECGKCAAACPYSAIVHLERPCKKACPVGAITYDEYGYCKIDEDKCIQCG 183 Query: 108 LCQEACPVDAI 118 C +CP AI Sbjct: 184 HCIHSCPFAAI 194 >gi|78223444|ref|YP_385191.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Geobacter metallireducens GS-15] gi|78194699|gb|ABB32466.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Geobacter metallireducens GS-15] Length = 371 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 27/62 (43%), Gaps = 11/62 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + RCIAC LC CP + +T GP I KCI CGLC CP AI Sbjct: 295 EQARCIACGLCAKRCPVRGVTSIMGPLH-----------ISEEKCIGCGLCVTTCPTQAI 343 Query: 119 VE 120 Sbjct: 344 SL 345 >gi|251789757|ref|YP_003004478.1| RnfABCDGE type electron transport complex subunit C [Dickeya zeae Ech1591] gi|247538378|gb|ACT06999.1| electron transport complex, RnfABCDGE type, C subunit [Dickeya zeae Ech1591] Length = 673 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 34/105 (32%), Gaps = 3/105 (2%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ CI C C CPA + + G + CI CG C CP I Sbjct: 374 EEQGCIRCGKCADACPAG-LLPQQLYWFSRGQEHEKARQHHLFDCIECGACAYVCP-SNI 431 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + Q L + + R+++ R + + R Sbjct: 432 PLVQYYRQEKAEIQTLDLESRKAAEAKARFDARQAR-LAKEKQAR 475 >gi|325610412|gb|ADZ36376.1| NADH dehydrogenase 18 kDa subunit [Lysimachia christinae] Length = 111 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 37/87 (42%), Gaps = 5/87 (5%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F + L + + TI YP+EK TS RFRG +CIAC++C +CP Sbjct: 22 IGQGFMITLSHANRLPVTIQYPYEKLITSERFRGRIHFEFD-----KCIACEVCVRVCPI 76 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIK 102 ++ +R + Y ID Sbjct: 77 DLPVVDWKFEPDIRKKRLLNYSIDFWN 103 >gi|291519873|emb|CBK75094.1| Iron only hydrogenase large subunit, C-terminal domain [Butyrivibrio fibrisolvens 16/4] Length = 492 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 29/71 (40%), Gaps = 6/71 (8%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCG 107 RR +C C +C CP QAI P + YD ID KCI CG Sbjct: 124 RRMHIDPTKCKECGMCAKECPYQAIVHLERPCKKACPVGAISYDEYGHCVIDDEKCISCG 183 Query: 108 LCQEACPVDAI 118 C +CP AI Sbjct: 184 HCIHSCPFGAI 194 >gi|262203739|ref|YP_003274947.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein [Gordonia bronchialis DSM 43247] gi|262087086|gb|ACY23054.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Gordonia bronchialis DSM 43247] Length = 559 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 24/71 (33%), Gaps = 3/71 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 C C A+CP I ID CI CG C + CP Sbjct: 1 MAHVITRPCCNDASCVAVCPVNCIHPTPDEPE---FFTAESLYIDPETCIDCGACIDECP 57 Query: 115 VDAIVEGPNFE 125 V+AI+ + E Sbjct: 58 VEAIIPDDSLE 68 >gi|257066859|ref|YP_003153115.1| hydrogenase large subunit domain-containing protein [Anaerococcus prevotii DSM 20548] gi|256798739|gb|ACV29394.1| hydrogenase large subunit domain protein [Anaerococcus prevotii DSM 20548] Length = 508 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 6/66 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV------RYDIDMIKCIYCGLCQEA 112 +++CI C C A CP QAI + P + + R ID KC+ CG C Sbjct: 146 DQDKCIKCGKCVAACPYQAINHQKRPCAESCGVKAIGSDELGRAKIDEDKCVACGRCIIT 205 Query: 113 CPVDAI 118 CP AI Sbjct: 206 CPFGAI 211 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 23/65 (35%), Gaps = 5/65 (7%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-----IDMIKCIYCGLCQEACPVDA 117 C AC + Q P + + V Y ID KCI CG C ACP A Sbjct: 105 CEACPENKVTVTDQCHACIGHPCVNVCPKNAVTYTAKGAIIDQDKCIKCGKCVAACPYQA 164 Query: 118 IVEGP 122 I Sbjct: 165 INHQK 169 >gi|254168196|ref|ZP_04875043.1| 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family [Aciduliprofundum boonei T469] gi|197622962|gb|EDY35530.1| 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family [Aciduliprofundum boonei T469] Length = 108 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 33/90 (36%), Gaps = 3/90 (3%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGT 90 P K ++ G R ++CI C +C CP AI E+ + Sbjct: 8 EPTPIAKVPSTENKTGGWRTFRPIIHYDKCIRCYICWKFCPDTAIYFASPEAHEAPKEAL 67 Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + +I+ C CG+C CP AI Sbjct: 68 AKFDTVEINYDFCKGCGICANECPTKAIEL 97 >gi|254425853|ref|ZP_05039570.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Synechococcus sp. PCC 7335] gi|196188276|gb|EDX83241.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Synechococcus sp. PCC 7335] Length = 1256 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 29/102 (28%), Gaps = 26/102 (25%) Query: 58 NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRYDIDMIKC 103 E C+ C C +CP +A + + + C Sbjct: 708 WDPEVCVQCAKCVMVCPHSVIRAKAYDPSLLRKAPKTFLHTEAREWEGKAFTLQVAAEDC 767 Query: 104 IYCGLCQEACPV--------DAIVEGPNFEFATE----TRQE 133 CG+C + CP AI P ++ + R + Sbjct: 768 TGCGICVDVCPAKNKAVPRLKAINMTPVYQPSQTEALDNRAD 809 >gi|149908969|ref|ZP_01897628.1| putative formate dehydrogenase, alphasubunit [Moritella sp. PE36] gi|149807980|gb|EDM67923.1| putative formate dehydrogenase, alphasubunit [Moritella sp. PE36] Length = 1383 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 10/75 (13%) Query: 59 GEERCIACKLCEAICPAQAITIE----------SGPRCHDGTRRTVRYDIDMIKCIYCGL 108 RCI+C C C QA+ S R + + C+ CG Sbjct: 616 DANRCISCGQCVDACNEQAVHGVLSFMKNDDGASASRPECRPGFENGFSMGDSNCVQCGR 675 Query: 109 CQEACPVDAIVEGPN 123 C + CP A+V+ + Sbjct: 676 CVQVCPTGALVDSRD 690 >gi|319936847|ref|ZP_08011259.1| 4Fe-4S ferredoxin [Coprobacillus sp. 29_1] gi|319808115|gb|EFW04687.1| 4Fe-4S ferredoxin [Coprobacillus sp. 29_1] Length = 366 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 11/64 (17%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 ++ CI C C IC A TI I+ KC+ CG C CP DAI Sbjct: 192 QDLCIGCGQCIKICAHDAPTITDHKAS-----------INHDKCVGCGRCIGVCPKDAIK 240 Query: 120 EGPN 123 + Sbjct: 241 ASMD 244 >gi|269139848|ref|YP_003296549.1| pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase, alpha subunit [Edwardsiella tarda EIB202] gi|267985509|gb|ACY85338.1| pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase, alpha subunit [Edwardsiella tarda EIB202] gi|304559687|gb|ADM42351.1| Pyruvate-flavodoxin oxidoreductase [Edwardsiella tarda FL6-60] Length = 1193 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 24/83 (28%), Gaps = 16/83 (19%) Query: 50 EHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVR 95 AL + CI C C +CP A R Sbjct: 683 NIALEIPAWRPDLCIQCGNCAFVCPHAAIRAKFYHQDLLDGAPQDFRSAPISARGFPETR 742 Query: 96 Y--DIDMIKCIYCGLCQEACPVD 116 Y + C CGLC EACPV Sbjct: 743 YTLQVYPEDCTGCGLCVEACPVR 765 Score = 37.4 bits (85), Expect = 0.62, Method: Composition-based stats. Identities = 9/19 (47%), Positives = 9/19 (47%) Query: 100 MIKCIYCGLCQEACPVDAI 118 CI CG C CP AI Sbjct: 693 PDLCIQCGNCAFVCPHAAI 711 >gi|167760379|ref|ZP_02432506.1| hypothetical protein CLOSCI_02753 [Clostridium scindens ATCC 35704] gi|167662052|gb|EDS06182.1| hypothetical protein CLOSCI_02753 [Clostridium scindens ATCC 35704] Length = 382 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 23/67 (34%), Gaps = 11/67 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C C +C A I ID KC+ CG C CP D Sbjct: 205 YVEVENCIGCGNCIRVCAHDAPKITDRKAF-----------IDHDKCVGCGRCIGVCPKD 253 Query: 117 AIVEGPN 123 A+ + Sbjct: 254 AVCPPND 260 >gi|294678050|ref|YP_003578665.1| dihydropyrimidine dehydrogenase [Rhodobacter capsulatus SB 1003] gi|294476870|gb|ADE86258.1| dihydropyrimidine dehydrogenase (NADP(+)) [Rhodobacter capsulatus SB 1003] Length = 433 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 30/110 (27%), Gaps = 14/110 (12%) Query: 15 EFVGAFFLCLRYFFKAKTTINYPFEKGSTSP----RFRGEHALRRYPNGEERCIACKLCE 70 E + Y + T + ++ + + ++ CI C C Sbjct: 298 EMISGLS---DYMDRKGLTETREIVGRAVPKVTDWQYLNLNYTTKASIAQDDCIKCGRCH 354 Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 +C E + +C+ C LC E CP I Sbjct: 355 IVC-------EDTSHQAIAMAADRTVTVKEEECVACNLCVEVCPTKCITM 397 >gi|255527174|ref|ZP_05394059.1| nitroreductase [Clostridium carboxidivorans P7] gi|296186117|ref|ZP_06854522.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7] gi|255509129|gb|EET85484.1| nitroreductase [Clostridium carboxidivorans P7] gi|296049385|gb|EFG88814.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7] Length = 273 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 40/108 (37%), Gaps = 16/108 (14%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 E+CI C C C + I + +G I+ CI CG C CP Sbjct: 1 MMNVNTEKCIGCGECIKDCFIRDIEMVNGKA-----------KINNKTCIKCGHCIAICP 49 Query: 115 VDAIVEGPNF---EFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 +A+ + E T++E D + LL N ++ + + + Sbjct: 50 KNAVS-TDEYDMKEVKEFTKEEFLIDPDNLL-NFIKFRRTVRQFKDKE 95 >gi|163731475|ref|ZP_02138922.1| iron-sulfur cluster-binding protein, putative [Roseobacter litoralis Och 149] gi|161394929|gb|EDQ19251.1| iron-sulfur cluster-binding protein, putative [Roseobacter litoralis Och 149] Length = 678 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 28/93 (30%), Gaps = 14/93 (15%) Query: 37 PF-EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P E L + C C C ++CP+ A+ + Sbjct: 507 PEAEVLELPDAAPYGAILV----DTDACTLCLSCVSLCPSGALGDNPD---------NPQ 553 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 C+ CGLC CP AI P F+ Sbjct: 554 LRFQEDACLQCGLCSNICPEQAITLKPQFDLTD 586 Score = 37.8 bits (86), Expect = 0.47, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 11/53 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C +CP AIT ID + C CG C CP AI Sbjct: 306 CTKCLDVCPTGAITSAGD-----------HVAIDPLICAGCGACSALCPSGAI 347 >gi|330829269|ref|YP_004392221.1| anaerobic sulfite reductase subunit C [Aeromonas veronii B565] gi|328804405|gb|AEB49604.1| Anaerobic sulfite reductase subunit C [Aeromonas veronii B565] Length = 336 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 28/93 (30%), Gaps = 8/93 (8%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 P + + G + + ERCI C C C A+ + Sbjct: 147 KMVIAGCPNDCAKANMADFGILGIAKIHFNAERCIGCGACVKACNHHAVDCLAIKHGKAV 206 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + KCI CG C ACP A P Sbjct: 207 K--------EESKCIGCGECVLACPTLAWQRDP 231 >gi|304397718|ref|ZP_07379595.1| electron transport complex, RnfABCDGE type, C subunit [Pantoea sp. aB] gi|304354890|gb|EFM19260.1| electron transport complex, RnfABCDGE type, C subunit [Pantoea sp. aB] Length = 947 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 3/110 (2%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + E+ CI C C CPA+ + + G + CI CG C C Sbjct: 368 MGNNDEEQSCIRCSACADACPAK-LLPQQLYWFSQGGDHDKARSHHIDDCIECGACAYVC 426 Query: 114 PVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 P I + + + + +R L R+E+ R + + R Sbjct: 427 P-SNIPLVQYYRQEKAELRAIDLEAKRTLEAKARFEARQAR-LEREKQAR 474 >gi|229020831|ref|ZP_04177540.1| formate dehydrogenase [Bacillus cereus AH1273] gi|229027420|ref|ZP_04183668.1| formate dehydrogenase [Bacillus cereus AH1272] gi|228733881|gb|EEL84627.1| formate dehydrogenase [Bacillus cereus AH1272] gi|228740456|gb|EEL90745.1| formate dehydrogenase [Bacillus cereus AH1273] Length = 975 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+E + + Y +CIAC C +C + R Sbjct: 119 HQKYPYE--PKVDASEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 176 Query: 93 TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120 + DI+ C+ CG C CP +A++E Sbjct: 177 VIWDEGVDINDSSCVSCGQCVTICPCNALME 207 Score = 40.1 bits (92), Expect = 0.12, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 87 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDASEVDMSHPFYRYDPNQ 146 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 147 CIACGQCVEVC 157 >gi|229132574|ref|ZP_04261423.1| formate dehydrogenase [Bacillus cereus BDRD-ST196] gi|228650920|gb|EEL06906.1| formate dehydrogenase [Bacillus cereus BDRD-ST196] Length = 978 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+E + + Y +CIAC C +C + R Sbjct: 119 HQKYPYE--PKVDASEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 176 Query: 93 TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120 + DI+ C+ CG C CP +A++E Sbjct: 177 VIWDEGVDINDSSCVSCGQCVTICPCNALME 207 Score = 40.1 bits (92), Expect = 0.12, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 87 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDASEVDMSHPFYRYDPNQ 146 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 147 CIACGQCVEVC 157 >gi|161870852|ref|YP_001600026.1| ferredoxin, 4Fe-4S type [Neisseria meningitidis 053442] gi|161596405|gb|ABX74065.1| ferredoxin, 4Fe-4S bacterial type [Neisseria meningitidis 053442] Length = 279 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C +CPA AI + + + +C CGLC CPVD I Sbjct: 75 DETACIGCTACIRVCPADAIMGAGK----------LMHTVIADECTGCGLCVAPCPVDCI 124 Query: 119 VEGP 122 P Sbjct: 125 HMQP 128 Score = 35.5 bits (80), Expect = 2.4, Method: Composition-based stats. Identities = 11/23 (47%), Positives = 12/23 (52%) Query: 97 DIDMIKCIYCGLCQEACPVDAIV 119 ID CI C C CP DAI+ Sbjct: 73 RIDETACIGCTACIRVCPADAIM 95 >gi|146304360|ref|YP_001191676.1| thiamine pyrophosphate binding domain-containing protein [Metallosphaera sedula DSM 5348] gi|145702610|gb|ABP95752.1| thiamine pyrophosphate enzyme domain protein TPP-binding protein [Metallosphaera sedula DSM 5348] Length = 607 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 22/65 (33%), Gaps = 10/65 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++C C +C AI S + I+ CI CG C CP +AI Sbjct: 542 NYDKCTGCTICYDYFTCPAILKRSDKKAV----------INPQDCIGCGACVPVCPFNAI 591 Query: 119 VEGPN 123 Sbjct: 592 KLEGE 596 >gi|317500246|ref|ZP_07958476.1| Fe-hydrogenase large subunit family protein [Lachnospiraceae bacterium 8_1_57FAA] gi|331087521|ref|ZP_08336454.1| hypothetical protein HMPREF1025_00037 [Lachnospiraceae bacterium 3_1_46FAA] gi|316898372|gb|EFV20413.1| Fe-hydrogenase large subunit family protein [Lachnospiraceae bacterium 8_1_57FAA] gi|330404066|gb|EGG83615.1| hypothetical protein HMPREF1025_00037 [Lachnospiraceae bacterium 3_1_46FAA] Length = 503 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 7/78 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQ 110 +E+CI C C+++CP AI + P + R ID KC+ CG+C Sbjct: 148 YIDQEKCIKCGKCKSVCPYDAIAKKERPCQKACGVNAIKSDKMGRAYIDNEKCVSCGMCM 207 Query: 111 EACPVDAI-VEGPNFEFA 127 +CP AI + F+ A Sbjct: 208 VSCPFGAISDKSQIFQLA 225 Score = 40.9 bits (94), Expect = 0.054, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 13/64 (20%) Query: 57 PNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 C C C+ +CP AI++ +G R ID KCI CG C+ CP Sbjct: 117 YEVSNICKGCLAHPCQEVCPKDAISMVNG-----------RSYIDQEKCIKCGKCKSVCP 165 Query: 115 VDAI 118 DAI Sbjct: 166 YDAI 169 >gi|126460373|ref|YP_001056651.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Pyrobaculum calidifontis JCM 11548] gi|126250094|gb|ABO09185.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Pyrobaculum calidifontis JCM 11548] Length = 83 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 10/68 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++CI C LC CP I E G + ID C CG+C + CPV AI Sbjct: 26 NLQKCIDCGLCWLYCPESVIDWEKGQKV----------TIDYTFCKGCGICADVCPVKAI 75 Query: 119 VEGPNFEF 126 P E Sbjct: 76 DMVPEGEL 83 >gi|332296822|ref|YP_004438744.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Treponema brennaborense DSM 12168] gi|332179925|gb|AEE15613.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Treponema brennaborense DSM 12168] Length = 370 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 11/65 (16%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 +E C+ C +C C AITIE+ I+ KC+ CG C ACP DA+ Sbjct: 196 QEACVGCGMCRKNCAHGAITIEAKKAS-----------INHDKCVGCGRCIGACPKDAVH 244 Query: 120 EGPNF 124 G + Sbjct: 245 PGADH 249 >gi|330446092|ref|ZP_08309744.1| pyridine nucleotide-disulphide oxidoreductase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490283|dbj|GAA04241.1| pyridine nucleotide-disulphide oxidoreductase family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 549 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 24/101 (23%), Gaps = 2/101 (1%) Query: 29 KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88 + E+ + + RC +C C Sbjct: 448 RNPINEVAVAERVKDFTEVVQGLTMDQAVYEATRCYSCGNC--FECDGCYGACPEQGAII 505 Query: 89 GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 + RY D KC C C CP AI P + Sbjct: 506 KLGKGNRYKFDYEKCTGCQACVNQCPCHAIAMSPVSDIPFT 546 >gi|237740168|ref|ZP_04570649.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. 2_1_31] gi|229422185|gb|EEO37232.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. 2_1_31] Length = 1189 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 50/131 (38%), Gaps = 21/131 (16%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-------------QAITIESGP 84 FE G+ + RG N ++CI C C +CP +A +E Sbjct: 676 FENGTAAFEKRGVAVDVPIWN-IDKCIQCNQCSYVCPHAVIRPFLINEEELKASPVELAT 734 Query: 85 RCHDGTRRT---VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERL 141 + G R + + C+ CG C CP A+ P + + ++++ K Sbjct: 735 KKPTGKGLDGLAYRIQVSTLDCVGCGSCAHVCPAKALDMMPIAD-SLNDKEDI---KADY 790 Query: 142 LNNGDRWESEI 152 L N ++ S++ Sbjct: 791 LFNNVKYRSDL 801 >gi|189220397|ref|YP_001941037.1| Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, beta subunit [Methylacidiphilum infernorum V4] gi|189187255|gb|ACD84440.1| Pyruvate:ferredoxin oxidoreductase or related 2-oxoacid:ferredoxin oxidoreductase, beta subunit [Methylacidiphilum infernorum V4] Length = 1182 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 33/130 (25%), Gaps = 26/130 (20%) Query: 29 KAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAICPAQ---AITIES- 82 K + P+ T S + +L CI C C CP A E Sbjct: 661 KLPVSSFSPYGAFPTATSRWEKRNISLEVPLWEPSLCIQCGQCIMACPHGVIRAKVYEPS 720 Query: 83 --GPRCHDGTRRTVRYDIDMI----------KCIYCGLCQEACP--------VDAIVEGP 122 + RY C C LC E CP AI Sbjct: 721 CLEKAPEGFLKAQARYPQWEGLFYSIAVSEADCTGCALCVEVCPAFDKYQPAKKAINMTM 780 Query: 123 NFEFATETRQ 132 + E R+ Sbjct: 781 RRDLFEELRK 790 >gi|82523792|emb|CAI78535.1| pyruvate oxidoreductase [uncultured Chloroflexi bacterium] Length = 1181 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 27/92 (29%), Gaps = 16/92 (17%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPR 85 T+ + AL + CI C C +CP A + Sbjct: 666 PTGTTQWEKRNIALEIPEWVPDLCIMCGKCVFVCPHAVIRAKVYEPQYLENAPETFKSRK 725 Query: 86 CHDGTRRTVRY--DIDMIKCIYCGLCQEACPV 115 + Y + C C LC EACPV Sbjct: 726 ANWKEFPDTLYSLQVAPEDCTGCALCVEACPV 757 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 1/27 (3%) Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEF 126 CI CG C CP A++ +E Sbjct: 686 PDLCIMCGKCVFVCP-HAVIRAKVYEP 711 >gi|305666200|ref|YP_003862487.1| ferredoxin (flavodoxin) oxidoreductase [Maribacter sp. HTCC2170] gi|88708191|gb|EAR00428.1| ferredoxin (flavodoxin) oxidoreductase [Maribacter sp. HTCC2170] Length = 1176 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 28/130 (21%), Positives = 37/130 (28%), Gaps = 40/130 (30%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIE------------------SGPRCHDG 89 RG +GEE C C C ICP AI + + R + Sbjct: 676 RGIADKVPVWDGEEICTQCNKCVVICPHAAIRAKVVSNGELANAPSTLKSVPAKGRPFNK 735 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACP--------VDAIVEG----------PNFEF----A 127 + + C C LC E CP AI PN+++ Sbjct: 736 EEESYVLQVSPQDCTGCDLCVEVCPAVSKEDPDFKAINMHSKLKVEGAEDPNWDYFIDLP 795 Query: 128 TETRQELYYD 137 R EL Sbjct: 796 DYDRTELNIT 805 >gi|257452670|ref|ZP_05617969.1| NAD-reducing iron-only hydrogenase large subunit [Fusobacterium sp. 3_1_5R] gi|317059210|ref|ZP_07923695.1| iron hydrogenase 1 [Fusobacterium sp. 3_1_5R] gi|313684886|gb|EFS21721.1| iron hydrogenase 1 [Fusobacterium sp. 3_1_5R] Length = 567 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 3/68 (4%) Query: 59 GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQEACPV 115 +CI C+ CE+IC Q+ I +G R + + +C +CG C CP Sbjct: 146 DVTKCIMCRRCESICRDIQSCNILTGVRRGFSAVVDTAFSRSLQHTRCTFCGQCVSVCPT 205 Query: 116 DAIVEGPN 123 AI E N Sbjct: 206 GAIYETDN 213 >gi|153814717|ref|ZP_01967385.1| hypothetical protein RUMTOR_00932 [Ruminococcus torques ATCC 27756] gi|145847748|gb|EDK24666.1| hypothetical protein RUMTOR_00932 [Ruminococcus torques ATCC 27756] Length = 503 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 36/78 (46%), Gaps = 7/78 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQ 110 +E+CI C C+++CP AI + P + R ID KC+ CG+C Sbjct: 148 YIDQEKCIKCGKCKSVCPYDAIAKKERPCQKACGVNAIKSDKMGRAYIDNEKCVSCGMCM 207 Query: 111 EACPVDAI-VEGPNFEFA 127 +CP AI + F+ A Sbjct: 208 VSCPFGAISDKSQIFQLA 225 Score = 40.9 bits (94), Expect = 0.056, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 13/64 (20%) Query: 57 PNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 C C C+ +CP AI++ +G R ID KCI CG C+ CP Sbjct: 117 YEVSNICKGCLAHPCQEVCPKDAISMVNG-----------RSYIDQEKCIKCGKCKSVCP 165 Query: 115 VDAI 118 DAI Sbjct: 166 YDAI 169 >gi|302343180|ref|YP_003807709.1| electron transport complex, RnfABCDGE type, C subunit [Desulfarculus baarsii DSM 2075] gi|301639793|gb|ADK85115.1| electron transport complex, RnfABCDGE type, C subunit [Desulfarculus baarsii DSM 2075] Length = 454 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 24/54 (44%), Gaps = 1/54 (1%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 E CI C C +CP I E G C G D D++ CI CG C CP Sbjct: 380 EPCIHCGRCVQVCPVNLIPAELGKMCQYGH-YEEAADKDLMHCIECGCCAYVCP 432 Score = 38.2 bits (87), Expect = 0.40, Method: Composition-based stats. Identities = 9/17 (52%), Positives = 12/17 (70%) Query: 103 CIYCGLCQEACPVDAIV 119 CI+CG C + CPV+ I Sbjct: 382 CIHCGRCVQVCPVNLIP 398 >gi|257066535|ref|YP_003152791.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Anaerococcus prevotii DSM 20548] gi|256798415|gb|ACV29070.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Anaerococcus prevotii DSM 20548] Length = 1175 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 29/117 (24%), Positives = 40/117 (34%), Gaps = 20/117 (17%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESG 83 FE G+T RG AL + CI C C +CP A Sbjct: 665 FESGTTQYEKRG-IALNVPEWQLDNCIQCNQCSYVCPHAVIRPFLVTEEEKANAPEGFDT 723 Query: 84 PRCHDGTRRTVRYDID--MIKCIYCGLCQEAC--PVDAIVEGPNFEFATETRQELYY 136 + + I + C CG C + C P A++ P FE E +E +Y Sbjct: 724 KKAIGKGMEGYEFRIQVSPLDCTGCGNCADVCPAPEKALLMKP-FEDEVEKEKENWY 779 >gi|160902062|ref|YP_001567643.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Petrotoga mobilis SJ95] gi|160359706|gb|ABX31320.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Petrotoga mobilis SJ95] Length = 100 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 6/78 (7%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 GE ++R E+C C C CP AI+ ++ ++++ C CG+ Sbjct: 28 GEWRIQRPIIDREKCTNCMQCWLYCPDMAIS------GGLDGKKMKLGEVNLDYCKGCGV 81 Query: 109 CQEACPVDAIVEGPNFEF 126 C CPV+AI P EF Sbjct: 82 CAAVCPVNAIEMKPESEF 99 >gi|325203327|gb|ADY98780.1| iron-sulfur cluster-binding protein [Neisseria meningitidis M01-240355] Length = 279 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 10/66 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C C CPA AI + + + +C CGLC CPVD Sbjct: 73 QIDETACIGCTACIRACPADAIMGAGK----------LMHTVIADECTGCGLCVAPCPVD 122 Query: 117 AIVEGP 122 I P Sbjct: 123 CIHMQP 128 >gi|310659325|ref|YP_003937046.1| cobyrinic acid a,c-diamide synthase [Clostridium sticklandii DSM 519] gi|308826103|emb|CBH22141.1| Cobyrinic acid a,c-diamide synthase [Clostridium sticklandii] Length = 295 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 31/74 (41%), Gaps = 12/74 (16%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 + + + E+CI C LC C AI ES Y ++ C C LC Sbjct: 56 YYGMNKAVIDSEKCINCGLCMEKCRFDAIENESD------------YKVNPFACEGCSLC 103 Query: 110 QEACPVDAIVEGPN 123 + CPV+AI+ + Sbjct: 104 EYVCPVNAIIMNKD 117 Score = 37.4 bits (85), Expect = 0.66, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 20/46 (43%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 ++ + + ID KCI CGLC E C DAI ++ Sbjct: 45 MHQNTDKISSNYYGMNKAVIDSEKCINCGLCMEKCRFDAIENESDY 90 >gi|302392276|ref|YP_003828096.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acetohalobium arabaticum DSM 5501] gi|302204353|gb|ADL13031.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acetohalobium arabaticum DSM 5501] Length = 369 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 28/75 (37%), Gaps = 14/75 (18%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 HA+ EE CI C C CP A I+ R KCI CG C Sbjct: 182 MHAVVTPEVEEEECITCGECSDWCPEDAFEIDEVSRLD------------EEKCIGCGEC 229 Query: 110 QEACPVDAIVEGPNF 124 CP DAI P F Sbjct: 230 IVTCPTDAI--TPRF 242 >gi|296158460|ref|ZP_06841291.1| dihydroorotate dehydrogenase family protein [Burkholderia sp. Ch1-1] gi|295891404|gb|EFG71191.1| dihydroorotate dehydrogenase family protein [Burkholderia sp. Ch1-1] Length = 444 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 8/75 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117 +++CI C LC C A + +++ +C+ C LC CPV Sbjct: 341 DQDKCIQCGLCHIACEDTAHQAIMKEKDGV-----RHFEVMDSECVGCNLCMHVCPVEQC 395 Query: 118 IVE--GPNFEFATET 130 I N E+A T Sbjct: 396 ITMERVDNGEYANWT 410 >gi|257466531|ref|ZP_05630842.1| NAD-reducing iron-only hydrogenase large subunit [Fusobacterium gonidiaformans ATCC 25563] gi|315917686|ref|ZP_07913926.1| iron hydrogenase 1 [Fusobacterium gonidiaformans ATCC 25563] gi|313691561|gb|EFS28396.1| iron hydrogenase 1 [Fusobacterium gonidiaformans ATCC 25563] Length = 567 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 3/68 (4%) Query: 59 GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQEACPV 115 +CI C+ CE+IC Q+ I +G R + + +C +CG C CP Sbjct: 146 DVTKCIMCRRCESICRDIQSCNILTGVRRGFSAVVDTAFSRSLQHTRCTFCGQCVSVCPT 205 Query: 116 DAIVEGPN 123 AI E N Sbjct: 206 GAIYETDN 213 >gi|229166602|ref|ZP_04294354.1| formate dehydrogenase [Bacillus cereus AH621] gi|228616856|gb|EEK73929.1| formate dehydrogenase [Bacillus cereus AH621] Length = 975 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+E + + Y +CIAC C +C + R Sbjct: 119 HQKYPYE--PKVDASEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 176 Query: 93 TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120 + DI+ C+ CG C CP +A++E Sbjct: 177 VIWDEGVDINDSSCVSCGQCVTICPCNALME 207 Score = 39.7 bits (91), Expect = 0.12, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 87 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDASEVDMSHPFYRYDPNQ 146 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 147 CIACGQCVEVC 157 >gi|163800923|ref|ZP_02194823.1| iron-sulfur cluster-binding protein [Vibrio sp. AND4] gi|159175272|gb|EDP60069.1| iron-sulfur cluster-binding protein [Vibrio sp. AND4] Length = 553 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 36/102 (35%), Gaps = 9/102 (8%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + C C C A+CP +A+ + + CI CGLC++ACP + Sbjct: 415 CESKGCTLCMSCVAVCPTRALHTDGE---------SPSLKFIEQDCIQCGLCEKACPENV 465 Query: 118 IVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 + P + + RQ+ E R + D Sbjct: 466 LTLTPRMNWVKQERQKAVVIHEEKAAECIRCHKPFAPQSMID 507 Score = 37.8 bits (86), Expect = 0.51, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 23/54 (42%), Gaps = 6/54 (11%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 C C CPA A++ + + R +I+ C G C ACP +AI Sbjct: 186 CDRCVDACPAGALSSQGSDKIGH------RIEINPYLCQGVGTCSTACPTEAIH 233 >gi|117621436|ref|YP_857087.1| anaerobic sulfite reductase subunit C [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562843|gb|ABK39791.1| anaerobic sulfite reductase subunit C [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 336 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 32/103 (31%), Gaps = 13/103 (12%) Query: 25 RYFFKAKTTIN-----YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79 ++ + + P + + G + + ERCI C C C A+ Sbjct: 137 KHLYPNPYHLKMVIAGCPNDCAKANMADFGILGIAKIHFNAERCIGCGACVKACSHHAVD 196 Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + + KCI CG C ACP A P Sbjct: 197 CLAIKHGKAVK--------EESKCIGCGECVLACPTLAWQRDP 231 >gi|320335010|ref|YP_004171721.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein [Deinococcus maricopensis DSM 21211] gi|319756299|gb|ADV68056.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Deinococcus maricopensis DSM 21211] Length = 326 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 35/99 (35%), Gaps = 16/99 (16%) Query: 36 YPFEKGST----------SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 P E+ G P ++ CI C +C +CP AIT + P Sbjct: 216 VPEERVPQDWVWRARALKPTPAPGTPVHWPAPVVDDTCIDCPVCANVCPTNAITRDFQPT 275 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 V +D+ C C C ++CP AI P + Sbjct: 276 GE------VTLTLDLAACTSCNACAQSCPPQAITLQPEW 308 Score = 41.6 bits (96), Expect = 0.033, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 12/55 (21%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C CP A+ + +I+ C CGLC +ACP A+ Sbjct: 34 CDACARACPHDAVILTH------------TVEINEANCTGCGLCVQACPSGALEF 76 Score = 38.9 bits (89), Expect = 0.24, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 34/115 (29%), Gaps = 26/115 (22%) Query: 18 GAFFLCLRYFFKAKTTI---NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP 74 F L F+ T+ + P + E + + + Sbjct: 186 RGMFGTL---FRGARTVVAQSIPDQPLPFVDWSVPEERVPQDW--------------VWR 228 Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 A+A+ P V D CI C +C CP +AI +F+ E Sbjct: 229 ARALKPTPAPGTPVHWPAPVVDD----TCIDCPVCANVCPTNAI--TRDFQPTGE 277 >gi|308186746|ref|YP_003930877.1| Electron transport complex protein rnfC [Pantoea vagans C9-1] gi|308057256|gb|ADO09428.1| Electron transport complex protein rnfC [Pantoea vagans C9-1] Length = 869 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 3/110 (2%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + E+ CI C C CPA+ + + G + CI CG C C Sbjct: 368 MGNNDEEQSCIRCSACADACPAK-LLPQQLYWYSQGGDHDKARAHHIDDCIECGACAYVC 426 Query: 114 PVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 P I + + + + +R L R+E+ R + + R Sbjct: 427 P-SNIPLVQYYRQEKAELRAIDLEAKRTLEAKARFEARQAR-LEREKQAR 474 >gi|256751838|ref|ZP_05492710.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter ethanolicus CCSD1] gi|256749245|gb|EEU62277.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter ethanolicus CCSD1] Length = 1197 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 40/123 (32%), Gaps = 30/123 (24%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG L + CI C C +CP +A + + Sbjct: 701 RGIAVLIPEWQ-IDNCIQCNQCSFVCPHAVIRPFLLTEKEVKKAPPTFNVKKAIGRGLEG 759 Query: 94 VRYDID--MIKCIYCGLCQEAC--PVDAIVEGP----------NFEFATE-TRQELYYDK 138 + Y I + C CG C + C P A++ P N+E+A ++ DK Sbjct: 760 LWYRIQVSPLDCTGCGNCADVCPAPTKALIMKPAEEQIEKEARNWEYAVTLDVKDNLVDK 819 Query: 139 ERL 141 L Sbjct: 820 TTL 822 >gi|78355772|ref|YP_387221.1| hydrogenase-like [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218177|gb|ABB37526.1| hydrogenase-like protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 483 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 6/66 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQEA 112 ++C+ C C +CP AI P + ID +CI+CG C A Sbjct: 145 DPDKCVQCGKCMNVCPYHAIVQIPIPCEESCPTGAISKDECGKQVIDYDRCIFCGKCMAA 204 Query: 113 CPVDAI 118 CP A+ Sbjct: 205 CPFAAV 210 Score = 41.2 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 27/72 (37%), Gaps = 13/72 (18%) Query: 54 RRYPNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 R + C C + C CP A+ I G ID KC+ CG C Sbjct: 109 RTHYEATSACRGCLAEACVQHCPKDAVRIVDGKS-----------RIDPDKCVQCGKCMN 157 Query: 112 ACPVDAIVEGPN 123 CP AIV+ P Sbjct: 158 VCPYHAIVQIPI 169 >gi|323705569|ref|ZP_08117143.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacterium xylanolyticum LX-11] gi|323535046|gb|EGB24823.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacterium xylanolyticum LX-11] Length = 1172 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 40/123 (32%), Gaps = 30/123 (24%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG + E+CI C C +CP A + Sbjct: 675 RGIAVMIPQWQ-IEKCIQCNQCSLVCPHAVIRPFLLNDEEVKNAPPTFETKKAVGRGLEA 733 Query: 94 VRYDID--MIKCIYCGLCQEACPVD--AIVEGP----------NFEFATE-TRQELYYDK 138 +Y I + C CG C + CP A+V P N+EFA + ++ +K Sbjct: 734 FQYRIQVSPLDCTGCGNCADVCPAPGKALVMMPAEGEIENQADNWEFAVKIKPKDNVMEK 793 Query: 139 ERL 141 L Sbjct: 794 TTL 796 >gi|229058395|ref|ZP_04196779.1| formate dehydrogenase [Bacillus cereus AH603] gi|228719904|gb|EEL71494.1| formate dehydrogenase [Bacillus cereus AH603] Length = 978 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+E + + Y +CIAC C +C + R Sbjct: 119 HQKYPYE--PKVDASEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 176 Query: 93 TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120 + DI+ C+ CG C CP +A++E Sbjct: 177 VIWDEGVDINDSSCVSCGQCVTICPCNALME 207 Score = 39.7 bits (91), Expect = 0.12, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 87 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDASEVDMSHPFYRYDPNQ 146 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 147 CIACGQCVEVC 157 >gi|153884|gb|AAA99277.1| anaerobic sulfite reductase [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 337 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 29/94 (30%), Gaps = 8/94 (8%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 + P + S G + + +RCI C C C A+ + Sbjct: 147 KTVIVGCPNDCAKASMADLGIIGVAKMRFTADRCIGCGACVKACSHHAVGCLALKNGKAV 206 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + CI CG C ACP A P+ Sbjct: 207 K--------EESACIGCGECVLACPTLAWQRKPD 232 >gi|218767102|ref|YP_002341614.1| putative ferredoxin [Neisseria meningitidis Z2491] gi|121051110|emb|CAM07381.1| putative ferredoxin [Neisseria meningitidis Z2491] Length = 279 Score = 51.6 bits (122), Expect = 3e-05, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 10/66 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C C CPA AI + + + +C CGLC CPVD Sbjct: 73 QIDETACIGCTACIRACPADAIMGAGK----------LMHTVIADECTGCGLCVAPCPVD 122 Query: 117 AIVEGP 122 I P Sbjct: 123 CIHMQP 128 >gi|294673934|ref|YP_003574550.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Prevotella ruminicola 23] gi|294474000|gb|ADE83389.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Prevotella ruminicola 23] Length = 1191 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 39/104 (37%), Gaps = 18/104 (17%) Query: 28 FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------- 80 F T++ +E G+ + RG A N ++ CI C C ICP AI Sbjct: 658 FVKHNTVDGSWEVGTAAYEKRGVEAFVPVWN-KDNCIQCNQCAYICPHAAIRPFVLDDEE 716 Query: 81 --------ESGPRCHDGTRRTVRYDIDMI--KCIYCGLCQEACP 114 ++ + + + I+ C+ CG C + CP Sbjct: 717 LKGFAAAADTLEMKAPAAMKGMHFRIETSVLDCLGCGNCADICP 760 >gi|227871720|ref|ZP_03990129.1| ferredoxin hydrogenase [Oribacterium sinus F0268] gi|227842429|gb|EEJ52650.1| ferredoxin hydrogenase [Oribacterium sinus F0268] Length = 488 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110 +C C +C CP AI + P + YD ID +CI CG C Sbjct: 127 HIDPMKCKECGMCATACPYSAIAQLTRPCKKPCPVNAITYDENGLCVIDDNRCIRCGQCV 186 Query: 111 EACPVDAI 118 +CP AI Sbjct: 187 HSCPFGAI 194 >gi|239627105|ref|ZP_04670136.1| nitroreductase [Clostridiales bacterium 1_7_47_FAA] gi|239517251|gb|EEQ57117.1| nitroreductase [Clostridiales bacterium 1_7_47FAA] Length = 264 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 31/90 (34%), Gaps = 11/90 (12%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 E CI C LC+ CPA I IE+ I CI CG C C Sbjct: 5 HIIRINPETCIGCGLCKRDCPAGNIQIENKKA-----------KILTQSCIMCGHCVAIC 53 Query: 114 PVDAIVEGPNFEFATETRQELYYDKERLLN 143 P A+ E E + + + LL Sbjct: 54 PKAAVTMTGFDEPPIEIGKPATLNPQELLA 83 Score = 34.7 bits (78), Expect = 3.9, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 13/33 (39%) Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + I+ CI CGLC+ CP I Sbjct: 1 MKNKHIIRINPETCIGCGLCKRDCPAGNIQIEN 33 >gi|153002602|ref|YP_001368283.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein [Shewanella baltica OS185] gi|151367220|gb|ABS10220.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella baltica OS185] Length = 553 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 31/82 (37%), Gaps = 9/82 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+C C C AICP A+ C+ CGLC+ ACP I Sbjct: 419 NVEKCTMCMSCVAICPTVALQDGGDKPALH---------FIEQNCVQCGLCEAACPEKVI 469 Query: 119 VEGPNFEFATETRQELYYDKER 140 P F TRQ+ + KE Sbjct: 470 SLTPQINFDKATRQQQHTLKEE 491 Score = 38.9 bits (89), Expect = 0.23, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 11/53 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C CPA AI+ + +ID C G C ACP AI Sbjct: 195 CNRCLNFCPADAISSVAKK-----------IEIDPYLCHGAGSCTSACPTGAI 236 >gi|39996453|ref|NP_952404.1| iron-sulfur cluster-binding protein [Geobacter sulfurreducens PCA] gi|39983333|gb|AAR34727.1| iron-sulfur cluster-binding protein [Geobacter sulfurreducens PCA] Length = 322 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 29/87 (33%), Gaps = 10/87 (11%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 PF+ ++ G + CI C LC C AI + + Sbjct: 145 CPFDCPKSATNDVGFQGAVWPVLSADHCIGCGLCAKSCTEDAIAMGDNGKPLF------- 197 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+YCG C + CP +A G Sbjct: 198 ---IPANCLYCGDCLKVCPTEAWRAGK 221 Score = 39.7 bits (91), Expect = 0.12, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 21/62 (33%), Gaps = 2/62 (3%) Query: 64 IACKLCEAIC-PAQAITIESGPRC-HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 I + A G + V + CI CGLC ++C DAI G Sbjct: 131 IPTGHHKFKVGFAGCPFDCPKSATNDVGFQGAVWPVLSADHCIGCGLCAKSCTEDAIAMG 190 Query: 122 PN 123 N Sbjct: 191 DN 192 >gi|317132141|ref|YP_004091455.1| dihydroorotate dehydrogenase family protein [Ethanoligenens harbinense YUAN-3] gi|315470120|gb|ADU26724.1| dihydroorotate dehydrogenase family protein [Ethanoligenens harbinense YUAN-3] Length = 401 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 6/63 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C+ C C C A S + T R D+ KC+ C LC CP AI Sbjct: 339 DRDACVGCGRCFISCRDGAHQAIS------WEKTTRRPDVLTEKCVGCHLCTLVCPTQAI 392 Query: 119 VEG 121 G Sbjct: 393 HPG 395 >gi|59711970|ref|YP_204746.1| formate hydrogenlyase subunit 6 [Vibrio fischeri ES114] gi|59480071|gb|AAW85858.1| formate hydrogenlyase subunit 6 [Vibrio fischeri ES114] Length = 566 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 10/84 (11%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + C C C A+CP +A+ + + C+ CGLC ACP Sbjct: 428 CETKDCTLCMGCVAVCPTRALHSDPD---------SPTLKFIEQDCVQCGLCVSACPEKV 478 Query: 118 IVEGPNFEFATETRQE-LYYDKER 140 + + ETRQE KE Sbjct: 479 LSMKVQMNWNQETRQETQIVHKED 502 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 22/53 (41%), Gaps = 6/53 (11%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C CPA A+T E + I+ C G C ACP +AI Sbjct: 197 CERCVDACPAGALTSEGSDQTGH------HIQINPYLCQGVGTCATACPTEAI 243 >gi|332296339|ref|YP_004438262.1| hydrogenase, Fe-only [Thermodesulfobium narugense DSM 14796] gi|332179442|gb|AEE15131.1| hydrogenase, Fe-only [Thermodesulfobium narugense DSM 14796] Length = 449 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 38/108 (35%), Gaps = 15/108 (13%) Query: 31 KTTINYP----FEKGSTSP-RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 T P KG +R + +C+ C C CPA AI E G Sbjct: 7 PVTTFLPGPDSRVKGPLPEGTYRPGELKGIIKINQNKCVGCDTCREQCPANAIRGELGVA 66 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 ID++KCI CG C CP AI + E + ++ Sbjct: 67 HS----------IDIMKCITCGQCLINCPFGAIEQMSFVEEVAKKLED 104 >gi|326201391|ref|ZP_08191263.1| NADH dehydrogenase (quinone) [Clostridium papyrosolvens DSM 2782] gi|325988959|gb|EGD49783.1| NADH dehydrogenase (quinone) [Clostridium papyrosolvens DSM 2782] Length = 597 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 10/69 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + +Y +C +C +C +CP I E + V Y ID KC CG+C E Sbjct: 539 MMKYTVEASKCKSCGICAKVCPMSCIKGE----------KKVPYVIDNTKCAKCGVCMEK 588 Query: 113 CPVDAIVEG 121 CP AI +G Sbjct: 589 CPFKAISKG 597 Score = 38.5 bits (88), Expect = 0.32, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 18/40 (45%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + + ++Y ++ KC CG+C + CP+ I Sbjct: 525 HVFDKKCPAGVCKSMMKYTVEASKCKSCGICAKVCPMSCI 564 >gi|161612684|ref|YP_001586649.1| hypothetical protein SPAB_00381 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|168261406|ref|ZP_02683379.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|161362048|gb|ABX65816.1| hypothetical protein SPAB_00381 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|205349348|gb|EDZ35979.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 337 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 28/94 (29%), Gaps = 8/94 (8%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 + P + S G + + RCI C C C A+ + Sbjct: 147 KTVIVGCPNDCAKASMADLGIIGVAKMRFTANRCIGCGACVKACSHHAVGCLALKNGKAV 206 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + CI CG C ACP A P+ Sbjct: 207 K--------EESACIGCGECVLACPTLAWQRKPD 232 >gi|138895374|ref|YP_001125827.1| subunit gamma of pyruvate oxidoreductase [Geobacillus thermodenitrificans NG80-2] gi|196249178|ref|ZP_03147877.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit [Geobacillus sp. G11MC16] gi|134266887|gb|ABO67082.1| Gamma subunit of pyruvate oxidoreductase [Geobacillus thermodenitrificans NG80-2] gi|196211407|gb|EDY06167.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit [Geobacillus sp. G11MC16] Length = 336 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 1/62 (1%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 ++CI C C+ +CP E G ++ ID C C C EACP Sbjct: 246 RWEADKCIHCVACDNVCPDLCFVWE-ERVDKKGRKQMFLAGIDYQYCKGCLKCVEACPTA 304 Query: 117 AI 118 A+ Sbjct: 305 AL 306 >gi|70732171|ref|YP_261927.1| RnfABCDGE type electron transport complex subunit B [Pseudomonas fluorescens Pf-5] gi|68346470|gb|AAY94076.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas fluorescens Pf-5] Length = 401 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 29/78 (37%), Gaps = 10/78 (12%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 RGE + E CI C C CP AI + + + + + +C Sbjct: 63 DHSRGEAPAQIAHIREAECIGCTKCIQACPVDAIVGAAK----------LMHSVLIDECT 112 Query: 105 YCGLCQEACPVDAIVEGP 122 C LC CPVD I P Sbjct: 113 GCDLCVAPCPVDCIDMLP 130 >gi|308070037|ref|YP_003871642.1| formate dehydrogenase subunit alpha [Paenibacillus polymyxa E681] gi|305859316|gb|ADM71104.1| Formate dehydrogenase alpha chain [Paenibacillus polymyxa E681] Length = 980 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP++ + + Y +CIAC C +C + R Sbjct: 123 HQKYPYQPKVDPTEV--DMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSLDWEAERPR 180 Query: 93 TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120 + D I+ C+ CG C CP +A++E Sbjct: 181 VIWDDRVAINDSSCVSCGQCVTVCPCNALME 211 Score = 38.2 bits (87), Expect = 0.41, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 18/71 (25%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C Q + + Y D + Sbjct: 91 RLLENHLLYCTVCDNNNGNCTLHNTAELMEIEHQKYPYQPKVDPTEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|261821594|ref|YP_003259700.1| electron transport complex protein RnfC [Pectobacterium wasabiae WPP163] gi|261605607|gb|ACX88093.1| electron transport complex, RnfABCDGE type, C subunit [Pectobacterium wasabiae WPP163] Length = 737 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 32/103 (31%), Gaps = 12/103 (11%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ CI C C CPA + + G + + CI CG C CP Sbjct: 373 EEQSCIRCSKCADACPAG-LLPQQLYWFSRGQEHEKARNHHLFDCIECGACAYVCP---- 427 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161 N RQE K + + + + D+ Sbjct: 428 ---SNIPLVQYYRQE----KAEIRAIDEDAQRAAQAKVRFDAK 463 >gi|320115140|ref|YP_004185299.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|319928231|gb|ADV78916.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 1197 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 40/123 (32%), Gaps = 30/123 (24%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG L + CI C C +CP +A + + Sbjct: 701 RGIAVLIPEWQ-IDNCIQCNQCSFVCPHAVIRPFLLTEKEVKKAPPTFNVKKAIGRGLEG 759 Query: 94 VRYDID--MIKCIYCGLCQEAC--PVDAIVEGP----------NFEFATE-TRQELYYDK 138 + Y I + C CG C + C P A++ P N+E+A ++ DK Sbjct: 760 LWYRIQVSPLDCTGCGNCADVCPAPTKALIMKPAEEQIEKEARNWEYAVTLDVKDNLVDK 819 Query: 139 ERL 141 L Sbjct: 820 TTL 822 >gi|15642785|ref|NP_227826.1| NADP-reducing hydrogenase, subunit C [Thermotoga maritima MSB8] gi|148270047|ref|YP_001244507.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1] gi|170288731|ref|YP_001738969.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2] gi|281412072|ref|YP_003346151.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10] gi|4980493|gb|AAD35104.1|AE001689_10 NADP-reducing hydrogenase, subunit C [Thermotoga maritima MSB8] gi|147735591|gb|ABQ46931.1| NADH dehydrogenase (quinone) [Thermotoga petrophila RKU-1] gi|170176234|gb|ACB09286.1| NADH dehydrogenase (quinone) [Thermotoga sp. RQ2] gi|281373175|gb|ADA66737.1| NADH dehydrogenase (quinone) [Thermotoga naphthophila RKU-10] Length = 607 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 39/96 (40%), Gaps = 15/96 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 LRY F+ + + ++ + AL Y E+C+ C C +CP Q I+ + Sbjct: 513 TLRY-FRDEYLAHVKEKRCPSKKC----KALISYVIDPEKCVGCTACARVCPVQCISGQ- 566 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + ID +C+ CG C E C AI Sbjct: 567 ---------VRQPHVIDQAECVRCGSCIEVCRFGAI 593 >gi|167036716|ref|YP_001664294.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167039436|ref|YP_001662421.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [Thermoanaerobacter sp. X514] gi|300915448|ref|ZP_07132761.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter sp. X561] gi|307725240|ref|YP_003904991.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter sp. X513] gi|166853676|gb|ABY92085.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Thermoanaerobacter sp. X514] gi|166855550|gb|ABY93958.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|300888508|gb|EFK83657.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter sp. X561] gi|307582301|gb|ADN55700.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter sp. X513] Length = 1171 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 40/123 (32%), Gaps = 30/123 (24%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG L + CI C C +CP +A + + Sbjct: 675 RGIAVLIPEWQ-IDNCIQCNQCSFVCPHAVIRPFLLTEKEVKKAPPTFNVKKAIGRGLEG 733 Query: 94 VRYDID--MIKCIYCGLCQEAC--PVDAIVEGP----------NFEFATE-TRQELYYDK 138 + Y I + C CG C + C P A++ P N+E+A ++ DK Sbjct: 734 LWYRIQVSPLDCTGCGNCADVCPAPTKALIMKPAEEQIEKEARNWEYAVTLDVKDNLVDK 793 Query: 139 ERL 141 L Sbjct: 794 TTL 796 >gi|220931476|ref|YP_002508384.1| NADH dehydrogenase (ubiquinone) 51 kDa subunit [Halothermothrix orenii H 168] gi|219992786|gb|ACL69389.1| NADH dehydrogenase (ubiquinone) 51 kDa subunit [Halothermothrix orenii H 168] Length = 594 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 32/69 (46%), Gaps = 11/69 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L RY E C C LC +CP AIT E ID+ KCI CG C + Sbjct: 536 LTRYKIIAEECRNCGLCAKVCPVDAITKEEEAHV-----------IDLDKCIKCGSCLDK 584 Query: 113 CPVDAIVEG 121 CP +A+ +G Sbjct: 585 CPFNAVQKG 593 Score = 41.2 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 16/40 (40%), Positives = 19/40 (47%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 I+ R RY I +C CGLC + CPVDAI Sbjct: 522 HIKDKNCPAGSCRNLTRYKIIAEECRNCGLCAKVCPVDAI 561 >gi|306792261|ref|ZP_07430563.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis SUMu005] gi|308339184|gb|EFP28035.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis SUMu005] Length = 575 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 3/64 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C C CP I G + ID + C+ CG C ACP Sbjct: 1 MPHVITQSCCNDASCVFACPVNCIHPTPDE---PGFATSEMLYIDPVACVDCGACVTACP 57 Query: 115 VDAI 118 V AI Sbjct: 58 VSAI 61 >gi|289555333|ref|ZP_06444543.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis KZN 605] gi|289439965|gb|EFD22458.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis KZN 605] Length = 550 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 3/64 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C C CP I G + ID + C+ CG C ACP Sbjct: 1 MPHVITQSCCNDASCVFACPVNCIHPTPDE---PGFATSEMLYIDPVACVDCGACVTACP 57 Query: 115 VDAI 118 V AI Sbjct: 58 VSAI 61 >gi|257052556|ref|YP_003130389.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Halorhabdus utahensis DSM 12940] gi|256691319|gb|ACV11656.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Halorhabdus utahensis DSM 12940] Length = 97 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 9/65 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CIAC C+ CP QA G Y D+ C CG+C+E CPVDAI Sbjct: 40 DAETCIACGQCDTFCPDQAAKPVEGEDF---------YAFDLDYCKGCGICEEVCPVDAI 90 Query: 119 VEGPN 123 Sbjct: 91 DMIRE 95 >gi|15608026|ref|NP_215401.1| NADPH:adrenodoxin oxidoreductase FprB [Mycobacterium tuberculosis H37Rv] gi|15840300|ref|NP_335337.1| ferredoxin/ferredoxin--NADP reductase, putative [Mycobacterium tuberculosis CDC1551] gi|31792074|ref|NP_854567.1| NADPH:adrenodoxin oxidoreductase FprB [Mycobacterium bovis AF2122/97] gi|121636809|ref|YP_977032.1| putative NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|148660663|ref|YP_001282186.1| putative ferredoxin/ferredoxin--NADP reductase [Mycobacterium tuberculosis H37Ra] gi|148822094|ref|YP_001286848.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis F11] gi|167968347|ref|ZP_02550624.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis H37Ra] gi|215402685|ref|ZP_03414866.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis 02_1987] gi|215410472|ref|ZP_03419280.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis 94_M4241A] gi|215426152|ref|ZP_03424071.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis T92] gi|215429743|ref|ZP_03427662.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis EAS054] gi|218752551|ref|ZP_03531347.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis GM 1503] gi|219556751|ref|ZP_03535827.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis T17] gi|224989280|ref|YP_002643967.1| putative NADPH:adrenodoxin oxidoreductase [Mycobacterium bovis BCG str. Tokyo 172] gi|253800092|ref|YP_003033093.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis KZN 1435] gi|254231194|ref|ZP_04924521.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis C] gi|254363817|ref|ZP_04979863.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis str. Haarlem] gi|254549863|ref|ZP_05140310.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260185781|ref|ZP_05763255.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis CPHL_A] gi|260199906|ref|ZP_05767397.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis T46] gi|260204088|ref|ZP_05771579.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis K85] gi|289442296|ref|ZP_06432040.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis T46] gi|289446451|ref|ZP_06436195.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis CPHL_A] gi|289568850|ref|ZP_06449077.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis T17] gi|289573512|ref|ZP_06453739.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis K85] gi|289744616|ref|ZP_06503994.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis 02_1987] gi|289749408|ref|ZP_06508786.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis T92] gi|289752941|ref|ZP_06512319.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis EAS054] gi|289761017|ref|ZP_06520395.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis GM 1503] gi|294996366|ref|ZP_06802057.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis 210] gi|297633403|ref|ZP_06951183.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis KZN 4207] gi|297730388|ref|ZP_06959506.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis KZN R506] gi|298524378|ref|ZP_07011787.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis 94_M4241A] gi|313657715|ref|ZP_07814595.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis KZN V2475] gi|54037133|sp|P65528|FPRB_MYCTU RecName: Full=Probable ferredoxin/ferredoxin--NADP reductase; Short=FNR gi|54037134|sp|P65529|FPRB_MYCBO RecName: Full=Probable ferredoxin/ferredoxin--NADP reductase; Short=FNR gi|1314025|emb|CAA97393.1| PROBABLE NADPH:ADRENODOXIN OXIDOREDUCTASE FPRB (ADRENODOXIN REDUCTASE) (AR) (FERREDOXIN-NADP(+) REDUCTASE) [Mycobacterium tuberculosis H37Rv] gi|13880462|gb|AAK45151.1| ferredoxin/ferredoxin--NADP reductase, putative [Mycobacterium tuberculosis CDC1551] gi|31617661|emb|CAD93771.1| PROBABLE NADPH:ADRENODOXIN OXIDOREDUCTASE FPRB (ADRENODOXIN REDUCTASE) (AR) (FERREDOXIN-NADP(+) REDUCTASE) [Mycobacterium bovis AF2122/97] gi|121492456|emb|CAL70924.1| Probable nadph:adrenodoxin oxidoreductase fprB [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|124600253|gb|EAY59263.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis C] gi|134149331|gb|EBA41376.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis str. Haarlem] gi|148504815|gb|ABQ72624.1| putative ferredoxin/ferredoxin--NADP reductase [Mycobacterium tuberculosis H37Ra] gi|148720621|gb|ABR05246.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis F11] gi|224772393|dbj|BAH25199.1| putative NADPH:adrenodoxin oxidoreductase [Mycobacterium bovis BCG str. Tokyo 172] gi|253321595|gb|ACT26198.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis KZN 1435] gi|289415215|gb|EFD12455.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis T46] gi|289419409|gb|EFD16610.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis CPHL_A] gi|289537943|gb|EFD42521.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis K85] gi|289542604|gb|EFD46252.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis T17] gi|289685144|gb|EFD52632.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis 02_1987] gi|289689995|gb|EFD57424.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis T92] gi|289693528|gb|EFD60957.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis EAS054] gi|289708523|gb|EFD72539.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis GM 1503] gi|298494172|gb|EFI29466.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis 94_M4241A] gi|323720595|gb|EGB29673.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis CDC1551A] gi|326904895|gb|EGE51828.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis W-148] gi|328459830|gb|AEB05253.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis KZN 4207] Length = 575 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 3/64 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C C CP I G + ID + C+ CG C ACP Sbjct: 1 MPHVITQSCCNDASCVFACPVNCIHPTPDE---PGFATSEMLYIDPVACVDCGACVTACP 57 Query: 115 VDAI 118 V AI Sbjct: 58 VSAI 61 >gi|15920260|ref|NP_375929.1| formate dehydrogenase subunit alpha [Sulfolobus tokodaii str. 7] gi|15621042|dbj|BAB65038.1| 973aa long hypothetical formate dehydrogenase alpha subunit [Sulfolobus tokodaii str. 7] Length = 973 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQE 111 Y +CI C C C A+ R V + I C+ CG C Sbjct: 135 FYVYNPSQCILCGRCVEACQDFAVNEVIWINWDLNPPRVVWDNGNPIGNSSCVNCGTCVT 194 Query: 112 ACPVDAIVE 120 CPV+A++E Sbjct: 195 VCPVNALME 203 Score = 41.2 bits (95), Expect = 0.052, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 7/80 (8%) Query: 48 RGEHALRRYPNGEERCIACKL-------CEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100 R + R + C C+ EA+ + + + + Y + Sbjct: 81 RKKAVERILKYHKLYCTVCENNNGDCPLHEAVIKLGINSQQYIEKPYPIDDSGPFYVYNP 140 Query: 101 IKCIYCGLCQEACPVDAIVE 120 +CI CG C EAC A+ E Sbjct: 141 SQCILCGRCVEACQDFAVNE 160 >gi|240102484|ref|YP_002958793.1| Indolepyruvate ferredoxin oxidoreductase alpha subunit (iorA) [Thermococcus gammatolerans EJ3] gi|239910038|gb|ACS32929.1| Indolepyruvate ferredoxin oxidoreductase alpha subunit (iorA) [Thermococcus gammatolerans EJ3] Length = 647 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 27/78 (34%), Gaps = 9/78 (11%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R Y EE+C CK+C AI ++ + ID C CG Sbjct: 579 RKGERWPIYHVIEEKCTGCKICINAYGCPAIYWDAEKKKA---------RIDPTICWGCG 629 Query: 108 LCQEACPVDAIVEGPNFE 125 C + CP DA E Sbjct: 630 GCAQVCPFDAFEPMKEGE 647 >gi|229004682|ref|ZP_04162419.1| formate dehydrogenase [Bacillus mycoides Rock1-4] gi|228756570|gb|EEM05878.1| formate dehydrogenase [Bacillus mycoides Rock1-4] Length = 979 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+E + + Y +CIAC C +C + R Sbjct: 123 HQKYPYE--PKVDASEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 180 Query: 93 TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120 + DI+ C+ CG C CP +A++E Sbjct: 181 VIWDDGEDINDSSCVSCGQCVTICPCNALME 211 Score = 40.1 bits (92), Expect = 0.10, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 91 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDASEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|325145280|gb|EGC67558.1| iron-sulfur cluster-binding protein [Neisseria meningitidis M01-240013] Length = 279 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CPA AI + + + +C CGLC CPVD I Sbjct: 75 DESACIGCTACIRACPADAIMGAGK----------LMHTVIADECTGCGLCVAPCPVDCI 124 Query: 119 VEGP 122 P Sbjct: 125 HMQP 128 Score = 35.5 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 12/23 (52%), Positives = 13/23 (56%) Query: 97 DIDMIKCIYCGLCQEACPVDAIV 119 ID CI C C ACP DAI+ Sbjct: 73 RIDESACIGCTACIRACPADAIM 95 >gi|308271652|emb|CBX28260.1| hypothetical protein N47_G35840 [uncultured Desulfobacterium sp.] Length = 1087 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 28/89 (31%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 P + + R+ GE+ CI C LC IC + S + Sbjct: 95 RCPDVPVLQKLGEQYGISETRFKKGEDTCILCGLCTRICAKMGNSAISLTGRGVEMKVDT 154 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + I C+ CG C CP I Sbjct: 155 PFHIQTEACLSCGACASVCPTGHITLEKI 183 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 4/59 (6%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C +C +C +ICP A + + I+ + C CGLC +C AI Sbjct: 1014 YCSSCGVCVSICPYSAPSFIEESARFFPGKA----QINPVLCKGCGLCVASCRSGAIRL 1068 >gi|188585464|ref|YP_001917009.1| hydrogenase large subunit domain protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350151|gb|ACB84421.1| hydrogenase large subunit domain protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 482 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 27/75 (36%), Gaps = 6/75 (8%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG------TRRTVRYDIDMIKCI 104 + ++CI C C+ CP AI P + ID KCI Sbjct: 114 FVQHKAKIDGQKCIECGKCKDACPYNAIVDVMRPCKKACGVNAINIEVNKKATIDNDKCI 173 Query: 105 YCGLCQEACPVDAIV 119 CG C CP AI+ Sbjct: 174 QCGACVYQCPFGAIM 188 Score = 38.9 bits (89), Expect = 0.21, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 13/58 (22%) Query: 63 CIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C C + CP AI ID KCI CG C++ACP +AI Sbjct: 95 CRGCLANHCVSYCPVGAIEFVQHKA-----------KIDGQKCIECGKCKDACPYNAI 141 >gi|161502296|ref|YP_001569408.1| hypothetical protein SARI_00327 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863643|gb|ABX20266.1| hypothetical protein SARI_00327 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 344 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 28/94 (29%), Gaps = 8/94 (8%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 + P + S G + + ERCI C C C A+ + Sbjct: 154 KTVIVGCPNDCAKASMADLGIIGVAKMRFTAERCIGCGACMKACSHHAVGCLALKNGKAV 213 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + CI CG C ACP A P Sbjct: 214 K--------EESACIGCGECVLACPTLAWQRKPE 239 >gi|149915672|ref|ZP_01904198.1| iron-sulfur cluster-binding protein, putative [Roseobacter sp. AzwK-3b] gi|149810564|gb|EDM70407.1| iron-sulfur cluster-binding protein, putative [Roseobacter sp. AzwK-3b] Length = 632 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 31/99 (31%), Gaps = 13/99 (13%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 L + C C C ++CP+ A+ + Sbjct: 467 PLPEDAPYGAVLV----DTDACTLCLSCVSLCPSGALLENPDK---------PQLRFQED 513 Query: 102 KCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140 C+ CGLC CP DAI P A ++ ++E Sbjct: 514 ACLQCGLCANVCPEDAITYEPRLNLADAAMTQVVLNEEE 552 Score = 38.5 bits (88), Expect = 0.34, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 19/55 (34%), Gaps = 11/55 (20%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C ICP AI ID + C CG C CP AI Sbjct: 257 VGCSNCLDICPTGAIIPAGE-----------HVTIDPMICAGCGACAARCPSGAI 300 >gi|160895522|ref|YP_001561104.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Delftia acidovorans SPH-1] gi|160361106|gb|ABX32719.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Delftia acidovorans SPH-1] Length = 439 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 26/70 (37%), Gaps = 11/70 (15%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 L ++ E CI C CEA CP AIT + Y + +C C Sbjct: 7 EHGILTQHLIDPEICIRCNTCEATCPVGAITHDD-----------RNYVVLAEQCNGCMD 55 Query: 109 CQEACPVDAI 118 C CP AI Sbjct: 56 CVSPCPTGAI 65 Score = 37.0 bits (84), Expect = 0.80, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 12/25 (48%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 ID CI C C+ CPV AI Sbjct: 16 IDPEICIRCNTCEATCPVGAITHDD 40 >gi|52081124|ref|YP_079915.1| formate dehydrogenase subunit alpha YrhE [Bacillus licheniformis ATCC 14580] gi|52786501|ref|YP_092330.1| YrhE [Bacillus licheniformis ATCC 14580] gi|52004335|gb|AAU24277.1| Formate dehydrogenase, alpha subunit YrhE [Bacillus licheniformis ATCC 14580] gi|52349003|gb|AAU41637.1| YrhE [Bacillus licheniformis ATCC 14580] Length = 979 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 4/89 (4%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+ + + Y +CIAC C +C + R + Sbjct: 125 KYPYTPKEDPSCAV-DMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWELERPRVI 183 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 + I+ C+ CG C CP +A++E Sbjct: 184 WDEGVSINESSCVSCGQCVTVCPCNALME 212 >gi|116754225|ref|YP_843343.1| formate dehydrogenase, alpha subunit [Methanosaeta thermophila PT] gi|116665676|gb|ABK14703.1| formate dehydrogenase, alpha subunit (F420) [Methanosaeta thermophila PT] Length = 920 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 27/84 (32%), Gaps = 3/84 (3%) Query: 39 EKGSTSPRFRGEHALR--RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 E+ ++G R + CI C C IC + Sbjct: 148 ERIRYPVSYKGLPVFREPFFDRDYNLCIMCGRCARICSELRGEGVLQMIADYHRGSWIGP 207 Query: 97 D-IDMIKCIYCGLCQEACPVDAIV 119 D + C +CG C +ACP A+ Sbjct: 208 DSLIESTCKFCGACVDACPTGALY 231 >gi|325205297|gb|ADZ00750.1| iron-sulfur cluster-binding protein [Neisseria meningitidis M04-240196] Length = 279 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CPA AI + + + +C CGLC CPVD I Sbjct: 75 DETACIGCTACIRACPADAIMGAGK----------LMHTVIADECTGCGLCVAPCPVDCI 124 Query: 119 VEGP 122 P Sbjct: 125 HMQP 128 Score = 35.1 bits (79), Expect = 3.3, Method: Composition-based stats. Identities = 12/23 (52%), Positives = 13/23 (56%) Query: 97 DIDMIKCIYCGLCQEACPVDAIV 119 ID CI C C ACP DAI+ Sbjct: 73 RIDETACIGCTACIRACPADAIM 95 >gi|239616787|ref|YP_002940109.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Kosmotoga olearia TBF 19.5.1] gi|239505618|gb|ACR79105.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Kosmotoga olearia TBF 19.5.1] Length = 98 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 27/81 (33%), Gaps = 10/81 (12%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G + R +CI C C CP AI ID C CG Sbjct: 27 GTWRIMRPIWDVNKCINCMQCWLFCPDLAIIQNDAKMEG----------IDYDYCKGCGT 76 Query: 109 CQEACPVDAIVEGPNFEFATE 129 C CP DAI P +F E Sbjct: 77 CAAVCPKDAIEMRPETDFQGE 97 >gi|190893219|ref|YP_001979761.1| NADH-ubiquinone oxidoreductase, chain G [Rhizobium etli CIAT 652] gi|190698498|gb|ACE92583.1| NADH-ubiquinone oxidoreductase protein, chain G [Rhizobium etli CIAT 652] Length = 860 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 3/82 (3%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 ++ S R + N RCI C+ C +C + G ++ Sbjct: 126 DKRVFHSEDIRLSPVIIMNVN---RCIQCQRCVRMCEEVVGAVALGTIEKGMDTAVTGFE 182 Query: 98 IDMIKCIYCGLCQEACPVDAIV 119 + C CG C E CPV A++ Sbjct: 183 GSLASCDQCGNCVEVCPVGALM 204 >gi|169351250|ref|ZP_02868188.1| hypothetical protein CLOSPI_02029 [Clostridium spiroforme DSM 1552] gi|169292312|gb|EDS74445.1| hypothetical protein CLOSPI_02029 [Clostridium spiroforme DSM 1552] Length = 599 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 37/93 (39%), Gaps = 13/93 (13%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 + F+ + + +K L +Y EE+C C LC CP AI E G Sbjct: 517 HQFRDEYIAHIVDKKCPAGVC----KELLQYVIDEEKCRKCGLCAKQCPVGAIHGELGKV 572 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 Y ID KCI CG C +AC + I Sbjct: 573 P---------YVIDQEKCIKCGQCIKACHFNVI 596 Score = 40.9 bits (94), Expect = 0.065, Method: Composition-based stats. Identities = 15/41 (36%), Positives = 19/41 (46%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 I + ++Y ID KC CGLC + CPV AI Sbjct: 526 HIVDKKCPAGVCKELLQYVIDEEKCRKCGLCAKQCPVGAIH 566 >gi|149195035|ref|ZP_01872127.1| NADH dehydrogenase subunit I [Caminibacter mediatlanticus TB-2] gi|149134748|gb|EDM23232.1| NADH dehydrogenase subunit I [Caminibacter mediatlanticus TB-2] Length = 168 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 10/105 (9%) Query: 12 FLKEFVGAFFLCLRYFFKAKT-TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70 + E F ++ F + + T + E SP FRG H ++ E C C C Sbjct: 1 MIFEIGEKIFRVMKAFKEPRIATKDIVKEPAHKSPIFRGRHIVKY-----EICTGCDACN 55 Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 ICP AI ++ P R ++++ CI+CGLC++ CP Sbjct: 56 KICPVDAIKMKPLPIK----RPNKVPEVNLAICIFCGLCEDVCPT 96 Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 16/46 (34%) Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 A H R+ + C C C + CPVDAI P Sbjct: 22 ATKDIVKEPAHKSPIFRGRHIVKYEICTGCDACNKICPVDAIKMKP 67 >gi|15679550|ref|NP_276667.1| tungsten formylmethanofuran dehydrogenase, subunit F [Methanothermobacter thermautotrophicus str. Delta H] gi|2622676|gb|AAB86028.1| tungsten formylmethanofuran dehydrogenase, subunit F [Methanothermobacter thermautotrophicus str. Delta H] Length = 336 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 34/71 (47%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R + +E CI C +CE +CP AI I+ +D KC++CG Sbjct: 126 RKDLITGEIEIDKETCIYCGMCEEMCPVDAIEIDHQVPTSSSPAVATDIRVDEDKCVHCG 185 Query: 108 LCQEACPVDAI 118 +C+ CPVDAI Sbjct: 186 ICKRICPVDAI 196 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 29/74 (39%), Positives = 35/74 (47%), Gaps = 1/74 (1%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 ++ +E CI CK CE CP AITI T +ID CIYCG+C Sbjct: 89 PKIIKSAEIDDETCIQCKACETACPQDAITITRDL-PERKDLITGEIEIDKETCIYCGMC 147 Query: 110 QEACPVDAIVEGPN 123 +E CPVDAI Sbjct: 148 EEMCPVDAIEIDHQ 161 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 5/72 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-----DIDMIKCIYCGLCQEAC 113 E++C+ C +C+ ICP AIT + V ID C+ CG CQE C Sbjct: 177 DEDKCVHCGICKRICPVDAITQVCRICPYGEYEIKVPEVTGTSYIDPELCVNCGWCQEIC 236 Query: 114 PVDAIVEGPNFE 125 PVDA FE Sbjct: 237 PVDAATVTKPFE 248 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 31/86 (36%), Gaps = 4/86 (4%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R R+ + C C LC ICP AI + + + ID KC+ CG Sbjct: 3 RTGEENRKLIFQDCLCAVCGLCGEICPVNAIEVNPTGAMVRTEQDESKICIDENKCVLCG 62 Query: 108 LCQEACPVDA----IVEGPNFEFATE 129 +C CP A I E A Sbjct: 63 MCSSICPFQALDLQIDGTSIKELAEY 88 Score = 42.0 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 3/87 (3%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 + E + E+ C AC+ C CP ++ P+ Sbjct: 227 VNCGWCQEICPVDAATVTKPFEGELIIDEDTCQACETCVMACPCNVLSF---PKPEKPGE 283 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAI 118 + + D CIYCG C+ +CPVDAI Sbjct: 284 KPAKLYKDERFCIYCGACERSCPVDAI 310 Score = 42.0 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 8/101 (7%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG----PRCHDGTRRTV 94 E T R E + E +C+ C +C +ICP QA+ ++ + + Sbjct: 34 EVNPTGAMVRTEQDESKICIDENKCVLCGMCSSICPFQALDLQIDGTSIKELAEYPKIIK 93 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 +ID CI C C+ ACP DAI + R++L Sbjct: 94 SAEIDDETCIQCKACETACPQDAITITRDL----PERKDLI 130 >gi|331084747|ref|ZP_08333835.1| hypothetical protein HMPREF0987_00138 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330410841|gb|EGG90263.1| hypothetical protein HMPREF0987_00138 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 504 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGL 108 + +CI C C++ CP AI + P + R ID KC+ CG+ Sbjct: 147 HSYIDQSKCIKCGKCKSACPYDAIAKKERPCARACGVNAIVSDKVGRAKIDNEKCVSCGM 206 Query: 109 CQEACPVDAI 118 C +CP AI Sbjct: 207 CMVSCPFGAI 216 Score = 42.4 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 13/64 (20%) Query: 57 PNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 C C C +CP AI++ +G ID KCI CG C+ ACP Sbjct: 118 YEVSNMCKGCLAHPCAEVCPKDAISMVNG-----------HSYIDQSKCIKCGKCKSACP 166 Query: 115 VDAI 118 DAI Sbjct: 167 YDAI 170 >gi|328553883|gb|AEB24375.1| YjgC [Bacillus amyloliquefaciens TA208] gi|328911259|gb|AEB62855.1| formate dehydrogenase, alpha subunit [Bacillus amyloliquefaciens LL3] Length = 985 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 9/101 (8%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 ++ + PF++ + Y ++CI C C C +T Sbjct: 114 TVKEM--KINHQSIPFDQKPYPKD----ESNPFYRYDPDQCILCGRCVEACQDVQVTETL 167 Query: 83 GPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPVDAIVE 120 R + I+ C+ CG C CP +A++E Sbjct: 168 SIDWDRKHPRVIWDQDVPINESSCVSCGHCSTVCPCNAMME 208 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 21/66 (31%), Gaps = 9/66 (13%) Query: 57 PNGEERCIAC----KLCEAICPA-----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 N E C C CE +I + + Y D +CI CG Sbjct: 93 HNHELYCTVCDYNNGSCEVHNTVKEMKINHQSIPFDQKPYPKDESNPFYRYDPDQCILCG 152 Query: 108 LCQEAC 113 C EAC Sbjct: 153 RCVEAC 158 >gi|312883749|ref|ZP_07743469.1| electron transport complex protein RnfC [Vibrio caribbenthicus ATCC BAA-2122] gi|309368599|gb|EFP96131.1| electron transport complex protein RnfC [Vibrio caribbenthicus ATCC BAA-2122] Length = 645 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 44/158 (27%), Gaps = 22/158 (13%) Query: 13 LKEFVGA---FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69 L + L + P K S + N CI C C Sbjct: 333 LPRLIMGGPMMGFTLPH-------SQVPITKTSNCILAPTRREISSDQNEMA-CIRCSAC 384 Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT- 128 CPA + + ++ + CI CG C CP I + A Sbjct: 385 ADACPAS-LLPQQLQWYAKAKDYEKCEELHIGDCIECGACAFVCP-SEIPLVQYYRQAKA 442 Query: 129 ---ETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 R+E KE R+E + R + D R Sbjct: 443 EIRTNREE----KEAAERAKLRFEEKKAR-LERDKEKR 475 >gi|269968577|ref|ZP_06182579.1| iron-sulfur cluster-binding protein [Vibrio alginolyticus 40B] gi|269826788|gb|EEZ81120.1| iron-sulfur cluster-binding protein [Vibrio alginolyticus 40B] Length = 553 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 36/102 (35%), Gaps = 9/102 (8%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + C C C A+CP +A+ + R+ CI CGLC++ACP Sbjct: 415 CESKDCTLCMSCVAVCPTRALHTDG---------RSPSLKFVEQDCIQCGLCEKACPEKV 465 Query: 118 IVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 + P + + RQ+ E R + D Sbjct: 466 LTLTPRMNWVKKERQKAVVIHEEKAAECIRCHKPFAPQSMID 507 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 6/54 (11%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 C+ C CPA A++ E + R +I+ C G C ACP +AI Sbjct: 186 CERCVDACPAGALSSEGSDKTGH------RIEINPYLCQGVGTCATACPTEAIH 233 >gi|260428000|ref|ZP_05781979.1| formate dehydrogenase, alpha subunit [Citreicella sp. SE45] gi|260422492|gb|EEX15743.1| formate dehydrogenase, alpha subunit [Citreicella sp. SE45] Length = 973 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 31/93 (33%), Gaps = 4/93 (4%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDID 99 + + + +CI C C C A+TIE + D Sbjct: 175 PLYMPKDQSNPYFTYDPSKCIVCSRCVRACEEVQGTFALTIEGRGFDSRVSAGAAGDDFL 234 Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 C+ CG C +ACP + E E T R+ Sbjct: 235 ASDCVSCGACVQACPTATLQEKSVAELGTPDRE 267 >gi|89055049|ref|YP_510500.1| formate dehydrogenase, alpha subunit [Jannaschia sp. CCS1] gi|88864598|gb|ABD55475.1| formate dehydrogenase alpha subunit [Jannaschia sp. CCS1] Length = 973 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 31/95 (32%), Gaps = 4/95 (4%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYD 97 + + + +CIAC C C A+T+E + D Sbjct: 164 PNPEWIPKDDSNPYFTYDPAKCIACSRCVRACEEVQGTFALTMEGRGFDSRISAGGPDSD 223 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 C+ CG C +ACP + E E T R Sbjct: 224 FLTSDCVSCGACVQACPTATLQEKSVIELGTPERS 258 >gi|325141137|gb|EGC63638.1| iron-sulfur cluster-binding protein [Neisseria meningitidis CU385] Length = 279 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CPA AI + + + +C CGLC CPVD I Sbjct: 75 DESACIGCTACIRACPADAIMGAGK----------LMHTVIADECTGCGLCVAPCPVDCI 124 Query: 119 VEGP 122 P Sbjct: 125 HMQP 128 Score = 35.5 bits (80), Expect = 2.9, Method: Composition-based stats. Identities = 12/23 (52%), Positives = 13/23 (56%) Query: 97 DIDMIKCIYCGLCQEACPVDAIV 119 ID CI C C ACP DAI+ Sbjct: 73 RIDESACIGCTACIRACPADAIM 95 >gi|315231233|ref|YP_004071669.1| NADH-quinone oxidoreductase subunit I [Thermococcus barophilus MP] gi|315184261|gb|ADT84446.1| NADH-quinone oxidoreductase chain I [Thermococcus barophilus MP] Length = 152 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 46/146 (31%), Gaps = 46/146 (31%) Query: 18 GAFFLCLRYFFKAKTTINYPFE----------------------KGSTSPRFRGEHALRR 55 A FL L+ + T +P + FRG+ Sbjct: 4 KAMFLFLKQLMERPFTNPFPVKHAPKNVTALIDKVQRGEAKINPPVPVPEGFRGKLKYT- 62 Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP- 114 ERCI C+LC +CPA A+ + + +C++C LC + CP Sbjct: 63 ----PERCIGCRLCILVCPANAMEWIPE---------LKKIRHYVSRCMFCALCVDVCPG 109 Query: 115 ---------VDAIVEGPNFEFATETR 131 V A+ F A + Sbjct: 110 KKFPGEEKAVKALRMSDEFLLADYNK 135 >gi|296109798|ref|YP_003616747.1| hypothetical protein Metin_1129 [Methanocaldococcus infernus ME] gi|295434612|gb|ADG13783.1| hypothetical protein Metin_1129 [Methanocaldococcus infernus ME] Length = 356 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 35/76 (46%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 R R +C+ C +C +CPAQAI + G T + +ID KCI Sbjct: 14 EISREGKEKRELIWNNNKCVGCGICYDVCPAQAIVLGPLGAIAKGIIDTFKLNIDENKCI 73 Query: 105 YCGLCQEACPVDAIVE 120 CGLC ACP DA+ Sbjct: 74 LCGLCASACPFDALNL 89 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 35/71 (49%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R + + +E+C+ C +C CPA AI +E + V +D +C+YC Sbjct: 140 RSKFVVGEININKEKCVYCGICADYCPADAIILERVIPTPTNPKPVVDIRVDTERCVYCR 199 Query: 108 LCQEACPVDAI 118 +C+ CP DAI Sbjct: 200 VCEYVCPHDAI 210 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 1/73 (1%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R R +E C+ C+ CE +CP +AI + +I+ KC+YCG Sbjct: 101 RYPKIKRDIEVSQETCVLCEQCEVVCPKEAIRVH-RELTERSKFVVGEININKEKCVYCG 159 Query: 108 LCQEACPVDAIVE 120 +C + CP DAI+ Sbjct: 160 ICADYCPADAIIL 172 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 38/105 (36%), Gaps = 5/105 (4%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA----ITIESGPRCHDGTRRTVRY 96 G +G + E +CI C LC + CP A I + + Sbjct: 50 GPLGAIAKGIIDTFKLNIDENKCILCGLCASACPFDALNLYINGVNSKDIERYPKIKRDI 109 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNF-EFATETRQELYYDKER 140 ++ C+ C C+ CP +AI E + E+ +KE+ Sbjct: 110 EVSQETCVLCEQCEVVCPKEAIRVHRELTERSKFVVGEININKEK 154 Score = 42.4 bits (98), Expect = 0.022, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 6/106 (5%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 L E + + + T + + + E+C AC+ C I Sbjct: 228 LYEDIKGETIVDKELC---VTCGWCSHICPVNAIKVEKPFEGEVKIDTEKCNACEACVYI 284 Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CP A+ + + + + ++ C+ CG C +ACPV+AI Sbjct: 285 CPCSALEFPEAKKKGE---KVTKLVVNQNLCVLCGACAKACPVNAI 327 Score = 42.4 bits (98), Expect = 0.023, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 8/75 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD--------IDMIKCIYCGLCQ 110 ERC+ C++CE +CP AI + +D C+ CG C Sbjct: 191 DTERCVYCRVCEYVCPHDAIEAICYKCPLHKRIPHAKLYEDIKGETIVDKELCVTCGWCS 250 Query: 111 EACPVDAIVEGPNFE 125 CPV+AI FE Sbjct: 251 HICPVNAIKVEKPFE 265 Score = 37.0 bits (84), Expect = 0.93, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 23/62 (37%), Gaps = 8/62 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E C+ C C ICP AI +E ID KC C C CP A+ Sbjct: 239 DKELCVTCGWCSHICPVNAIKVEKPFEGE--------VKIDTEKCNACEACVYICPCSAL 290 Query: 119 VE 120 Sbjct: 291 EF 292 Score = 34.7 bits (78), Expect = 4.4, Method: Composition-based stats. Identities = 12/22 (54%), Positives = 15/22 (68%) Query: 101 IKCIYCGLCQEACPVDAIVEGP 122 KC+ CG+C + CP AIV GP Sbjct: 30 NKCVGCGICYDVCPAQAIVLGP 51 >gi|325661658|ref|ZP_08150282.1| hypothetical protein HMPREF0490_01016 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472185|gb|EGC75399.1| hypothetical protein HMPREF0490_01016 [Lachnospiraceae bacterium 4_1_37FAA] Length = 504 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGL 108 + +CI C C++ CP AI + P + R ID KC+ CG+ Sbjct: 147 HSYIDQSKCIKCGKCKSACPYDAIAKKERPCARACGVNAIVSDKVGRAKIDNEKCVSCGM 206 Query: 109 CQEACPVDAI 118 C +CP AI Sbjct: 207 CMVSCPFGAI 216 Score = 42.4 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 13/64 (20%) Query: 57 PNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 C C C +CP AI++ +G ID KCI CG C+ ACP Sbjct: 118 YEVSNMCKGCLAHPCAEVCPKDAISMVNG-----------HSYIDQSKCIKCGKCKSACP 166 Query: 115 VDAI 118 DAI Sbjct: 167 YDAI 170 >gi|325972699|ref|YP_004248890.1| hydrogenase large subunit domain protein [Spirochaeta sp. Buddy] gi|324027937|gb|ADY14696.1| hydrogenase large subunit domain protein [Spirochaeta sp. Buddy] Length = 486 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR------YDIDMIKCIYCGLCQ 110 E RCI C C+ +CP A+ P V+ +ID CI CG C Sbjct: 144 HIDESRCIRCGKCKEVCPFHAVVHIPVPCEEACPVNAVKKNAEGYVEIDYKLCISCGRCA 203 Query: 111 EACPVDAIVE 120 +CP AIVE Sbjct: 204 MSCPFGAIVE 213 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 5/65 (7%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-----DIDMIKCIYCGLCQEACPVDA 117 C +C + + P + + + + ID +CI CG C+E CP A Sbjct: 105 CSSCPPDRYLISDACRGCFARPCLANCPKDCITFSGGQAHIDESRCIRCGKCKEVCPFHA 164 Query: 118 IVEGP 122 +V P Sbjct: 165 VVHIP 169 >gi|323702072|ref|ZP_08113740.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574] gi|323532954|gb|EGB22825.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574] Length = 627 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 39/97 (40%), Gaps = 15/97 (15%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 LRY F+ + + +K AL+ Y E+C C LC +CPA AIT E Sbjct: 543 TTLRY-FRDEYIAHVRDKKCPAGAC----QALKEYYIDPEKCKGCTLCSRVCPAGAITGE 597 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 I++ C+ CG C E C AI Sbjct: 598 KKQPHE----------INVELCLKCGTCAEKCKFGAI 624 >gi|299531136|ref|ZP_07044548.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Comamonas testosteroni S44] gi|298720839|gb|EFI61784.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Comamonas testosteroni S44] Length = 433 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 11/70 (15%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 L+++ E CI C CEA CP AIT + Y + KC C Sbjct: 8 ENGILKQHLIDPEICIRCNTCEATCPVDAITHDDN-----------NYVVMADKCNGCMD 56 Query: 109 CQEACPVDAI 118 C CP +I Sbjct: 57 CISPCPTGSI 66 Score = 38.5 bits (88), Expect = 0.28, Method: Composition-based stats. Identities = 13/26 (50%), Positives = 14/26 (53%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPN 123 ID CI C C+ CPVDAI N Sbjct: 17 IDPEICIRCNTCEATCPVDAITHDDN 42 >gi|264676201|ref|YP_003276107.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Comamonas testosteroni CNB-2] gi|262206713|gb|ACY30811.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Comamonas testosteroni CNB-2] Length = 433 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 11/70 (15%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 L+++ E CI C CEA CP AIT + Y + KC C Sbjct: 8 ENGILKQHLIDPEICIRCNTCEATCPVDAITHDDN-----------NYVVMADKCNGCMD 56 Query: 109 CQEACPVDAI 118 C CP +I Sbjct: 57 CISPCPTGSI 66 Score = 38.5 bits (88), Expect = 0.28, Method: Composition-based stats. Identities = 13/26 (50%), Positives = 14/26 (53%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPN 123 ID CI C C+ CPVDAI N Sbjct: 17 IDPEICIRCNTCEATCPVDAITHDDN 42 >gi|227326453|ref|ZP_03830477.1| electron transport complex protein RnfC [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 684 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 32/103 (31%), Gaps = 12/103 (11%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ CI C C CPA + + G + + CI CG C CP Sbjct: 373 EEQSCIRCSKCADACPAG-LLPQQLYWFSRGQEHEKARNHHLFDCIECGACAYVCP---- 427 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161 N RQE K + + + + D+ Sbjct: 428 ---SNIPLVQYYRQE----KAEIRAIDEEAQRAAQAKVRFDAK 463 >gi|227111414|ref|ZP_03825070.1| electron transport complex protein RnfC [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 753 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 32/103 (31%), Gaps = 12/103 (11%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ CI C C CPA + + G + + CI CG C CP Sbjct: 373 EEQSCIRCSKCADACPAG-LLPQQLYWFSRGQEHEKARNHHLFDCIECGACAYVCP---- 427 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161 N RQE K + + + + D+ Sbjct: 428 ---SNIPLVQYYRQE----KAEIRAIDEEAQRAAQAKVRFDAK 463 >gi|167755792|ref|ZP_02427919.1| hypothetical protein CLORAM_01307 [Clostridium ramosum DSM 1402] gi|237734759|ref|ZP_04565240.1| NADH dehydrogenase [Mollicutes bacterium D7] gi|167704731|gb|EDS19310.1| hypothetical protein CLORAM_01307 [Clostridium ramosum DSM 1402] gi|229382087|gb|EEO32178.1| NADH dehydrogenase [Coprobacillus sp. D7] Length = 599 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 13/93 (13%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 + F+ + + +K L +Y E++C C LC CP AI+ E G Sbjct: 517 HQFRDEYIAHIVDKKCPAGVC----KELLQYEIDEDKCRKCGLCAKQCPVGAISGELGKV 572 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 Y ID KCI CG C +AC + I Sbjct: 573 P---------YVIDQEKCIKCGQCIKACHFNVI 596 >gi|218779911|ref|YP_002431229.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfatibacillum alkenivorans AK-01] gi|218761295|gb|ACL03761.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfatibacillum alkenivorans AK-01] Length = 363 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 10/67 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C AC CE C AIT + +D +CI CGLC CP +AI Sbjct: 274 DAELCAACGDCEERCQVLAITYDDDGIAV----------VDEDRCIGCGLCVTTCPTEAI 323 Query: 119 VEGPNFE 125 P E Sbjct: 324 TLKPVSE 330 >gi|172061288|ref|YP_001808940.1| ferredoxin [Burkholderia ambifaria MC40-6] gi|171993805|gb|ACB64724.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia ambifaria MC40-6] Length = 341 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 22/66 (33%), Gaps = 10/66 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C LC CP AI + I C C LC CPVD Sbjct: 113 FIDESLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVESLCTGCDLCVPPCPVD 162 Query: 117 AIVEGP 122 I P Sbjct: 163 CIAMVP 168 >gi|67968340|dbj|BAE00240.1| NADH dehydrogenase subunit I [Selaginella uncinata] Length = 185 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 43/120 (35%), Gaps = 5/120 (4%) Query: 18 GAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA 77 F + + + TI YP+EK S RFRG IA + + P Sbjct: 21 RGFTVTPDHMDRLPITIQYPYEKSIPSERFRGRIHFEFDKR-----IAREARVRVRPTHL 75 Query: 78 ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 ++ G +R+ + ID + G E P + +E T R EL +D Sbjct: 76 PVVDRGLGEGMRRKRSRSHSIDPGARTFRGNRAEYRPTNRSPMTGEYEPPTHDRHELNHD 135 >gi|117927911|ref|YP_872462.1| putative glutamate synthase (NADPH) small subunit [Acidothermus cellulolyticus 11B] gi|117648374|gb|ABK52476.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Acidothermus cellulolyticus 11B] Length = 543 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 3/63 (4%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 RC +C C A+ ++ + Y ID+ C CGLC CPV AI Sbjct: 477 RRCFSCGNCFQCDNCYAVCPDAAVLKVESGHG---YAIDLDYCKGCGLCVAECPVGAIRT 533 Query: 121 GPN 123 P Sbjct: 534 VPE 536 >gi|197335123|ref|YP_002156163.1| formate hydrogenlyase subunit 6 [Vibrio fischeri MJ11] gi|197316613|gb|ACH66060.1| formate hydrogenlyase subunit 6 [Vibrio fischeri MJ11] Length = 558 Score = 51.6 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 31/84 (36%), Gaps = 10/84 (11%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + C C C A+CP +A+ + + C+ CGLC ACP Sbjct: 420 CETKDCTLCMGCVAVCPTRALHSDPD---------SPTLKFIEQDCVQCGLCVSACPEKV 470 Query: 118 IVEGPNFEFATETRQE-LYYDKER 140 + + ETRQE KE Sbjct: 471 LSMKVQMNWNQETRQETQIVHKED 494 Score = 40.1 bits (92), Expect = 0.12, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 12/82 (14%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 C+ C CPA A+T E + I+ C G C ACP +AI + Sbjct: 189 CERCVDACPAGALTSEGSDQTGH------HIQINPYLCQGVGTCATACPTEAIS----YA 238 Query: 126 FATETRQELYYDKERLLNNGDR 147 + + + RLL N + Sbjct: 239 LPEAEKTQNFAT--RLLANYKK 258 >gi|308049505|ref|YP_003913071.1| formate dehydrogenase, alpha subunit [Ferrimonas balearica DSM 9799] gi|307631695|gb|ADN75997.1| formate dehydrogenase, alpha subunit [Ferrimonas balearica DSM 9799] Length = 1366 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 28/86 (32%), Gaps = 3/86 (3%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---I 98 +F + + RCI+C C C Q + R D + Sbjct: 595 PAPQKFAVDESSPFIRLDRNRCISCGQCVQACREQGVHNVLRFPDGAPMCRVQVADGELM 654 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNF 124 C CG+C +ACPV AI Sbjct: 655 ATSDCAQCGMCIQACPVGAITAKTQH 680 Score = 38.2 bits (87), Expect = 0.43, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 17/48 (35%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 C C +C CP AIT ++ + I + CGL Sbjct: 657 SDCAQCGMCIQACPVGAITAKTQHQHGQKDEYKKVNTICTYCGVGCGL 704 >gi|126732920|ref|ZP_01748710.1| iron-sulfur cluster-binding protein [Sagittula stellata E-37] gi|126706626|gb|EBA05701.1| iron-sulfur cluster-binding protein [Sagittula stellata E-37] Length = 649 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 13/102 (12%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E L ++ C C C ++CP+ A+ + R +R+ Sbjct: 483 ETLPLPEGAPYGAVLV----DQDACTLCLSCVSLCPSGAL-------GDNPDRPELRFQ- 530 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140 C+ CGLC CP +AI P + + +E Sbjct: 531 -EDACLQCGLCANVCPEEAISLQPQLDLTPAALTQRVLKEEE 571 Score = 40.1 bits (92), Expect = 0.10, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 11/55 (20%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C +CP AIT + +D + C CG C CP AI Sbjct: 277 TGCTRCLDLCPTGAITPDGE-----------HVSVDPLICAGCGACSAVCPSGAI 320 >gi|220932902|ref|YP_002509810.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Halothermothrix orenii H 168] gi|219994212|gb|ACL70815.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Halothermothrix orenii H 168] Length = 370 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 25/65 (38%), Gaps = 11/65 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 EE+C C+ C CP AITI ID CI CG C CP DAI Sbjct: 192 DEEKCEKCRKCVKFCPENAITINKE-----------TSTIDQNLCIGCGECVVTCPTDAI 240 Query: 119 VEGPN 123 Sbjct: 241 KIQWE 245 Score = 35.1 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 11/37 (29%), Positives = 14/37 (37%) Query: 87 HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 V +ID KC C C + CP +AI Sbjct: 180 KQMMHSDVLPEIDEEKCEKCRKCVKFCPENAITINKE 216 >gi|115352416|ref|YP_774255.1| ferredoxin [Burkholderia ambifaria AMMD] gi|115282404|gb|ABI87921.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia ambifaria AMMD] Length = 339 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 22/66 (33%), Gaps = 10/66 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C LC CP AI + I C C LC CPVD Sbjct: 113 FIDESLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVESLCTGCDLCVPPCPVD 162 Query: 117 AIVEGP 122 I P Sbjct: 163 CIAMVP 168 >gi|326391290|ref|ZP_08212831.1| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter ethanolicus JW 200] gi|325992685|gb|EGD51136.1| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter ethanolicus JW 200] Length = 291 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 42/110 (38%), Gaps = 22/110 (20%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE-------ERCIACKLCEAIC 73 L K K + E + + +GE ++ G+ ++CI C LCE +C Sbjct: 19 ATTLSTIIKNKIMADCDVEAPNLNIVLQGEIIEKQDFYGKETAVIDKDKCIECGLCERLC 78 Query: 74 PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 AI+ ++++ C CGLC CPV+AI Sbjct: 79 RFDAISN---------------FEVNPYYCEGCGLCMYKCPVEAIKLVEE 113 >gi|317489291|ref|ZP_07947808.1| indolepyruvate ferredoxin oxidoreductase [Eggerthella sp. 1_3_56FAA] gi|325832214|ref|ZP_08165213.1| putative indolepyruvate ferredoxin oxidoreductase, alpha subunit [Eggerthella sp. HGA1] gi|316911692|gb|EFV33284.1| indolepyruvate ferredoxin oxidoreductase [Eggerthella sp. 1_3_56FAA] gi|325486050|gb|EGC88504.1| putative indolepyruvate ferredoxin oxidoreductase, alpha subunit [Eggerthella sp. HGA1] Length = 767 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 2/73 (2%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C CK C I ++ R +R + +D C CGLC + CP DA+ Sbjct: 687 DAETCTGCKKCITEIGCPGIGFDADARGPRSKQRGQAF-VDPSLCNGCGLCVQVCPFDAL 745 Query: 119 VEG-PNFEFATET 130 P + + ET Sbjct: 746 SMTEPQTDVSRET 758 >gi|309390025|gb|ADO77905.1| Ferredoxin hydrogenase [Halanaerobium praevalens DSM 2228] Length = 501 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 6/66 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQEA 112 +E+CI C C+ CP +AI P R I+ C+ CG C A Sbjct: 149 DQEKCINCGKCKKACPYEAIVNYERPCAEACGVDAIESDEYQRAKINQNNCVSCGQCIIA 208 Query: 113 CPVDAI 118 CP AI Sbjct: 209 CPFGAI 214 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 8/68 (11%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-----IDMIKCIYCGLCQEACPVDA 117 C C + P + + ID KCI CG C++ACP +A Sbjct: 108 CEKCPTNAHFVTNNCRKCLAHPCSIVCPVDAITIEEKAAVIDQEKCINCGKCKKACPYEA 167 Query: 118 IVEGPNFE 125 IV N+E Sbjct: 168 IV---NYE 172 >gi|302336924|ref|YP_003802130.1| dihydroorotate dehydrogenase [Spirochaeta smaragdinae DSM 11293] gi|301634109|gb|ADK79536.1| dihydroorotate dehydrogenase family protein [Spirochaeta smaragdinae DSM 11293] Length = 834 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 15/96 (15%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 +P + S A R G CI C C A+CP A T++ Sbjct: 753 FPEVETGLSEDAARREAARCMHCG---CINCLRCVAVCPYNARTLD-----------FPI 798 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 +D C CG C CP A+ E A E+R Sbjct: 799 MSVDRELCRNCGACVSVCPTGALTATVVDELA-ESR 833 >gi|225028997|ref|ZP_03718189.1| hypothetical protein EUBHAL_03289 [Eubacterium hallii DSM 3353] gi|224953695|gb|EEG34904.1| hypothetical protein EUBHAL_03289 [Eubacterium hallii DSM 3353] Length = 506 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 6/66 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112 ++ CI C C +C AI ++ P + + D ID KC+ CG+C Sbjct: 149 DQDACIKCGRCATVCSYNAIIVQERPCAKACGMKAITSDENGKATIDYDKCVSCGMCLVN 208 Query: 113 CPVDAI 118 CP AI Sbjct: 209 CPFGAI 214 Score = 37.4 bits (85), Expect = 0.68, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 21/63 (33%), Gaps = 7/63 (11%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-------IDMIKCIYCGLCQEACPV 115 C AC + + P ++ + D ID CI CG C C Sbjct: 106 CNACDEKKVHVTDGCQGCLAHPCMEVCPKKAISLDRVTGKSIIDQDACIKCGRCATVCSY 165 Query: 116 DAI 118 +AI Sbjct: 166 NAI 168 >gi|167752987|ref|ZP_02425114.1| hypothetical protein ALIPUT_01250 [Alistipes putredinis DSM 17216] gi|167659301|gb|EDS03431.1| hypothetical protein ALIPUT_01250 [Alistipes putredinis DSM 17216] Length = 271 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 6/68 (8%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112 + CI+C +C + CP AI P + + D ID KCIYCG C + Sbjct: 142 NHDLCISCGICHSNCPYHAIVYMPVPCEEACPVKAITKDERGVEHIDESKCIYCGKCINS 201 Query: 113 CPVDAIVE 120 CP AI E Sbjct: 202 CPFGAIFE 209 Score = 34.3 bits (77), Expect = 6.0, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 22/69 (31%), Gaps = 8/69 (11%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + C C C P+ R + I+ CI CG+C C Sbjct: 105 QTNYEITNLCKGC--VARACATNC------PKNAIEFNRAGKAVINHDLCISCGICHSNC 156 Query: 114 PVDAIVEGP 122 P AIV P Sbjct: 157 PYHAIVYMP 165 >gi|16761464|ref|NP_457081.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|16765870|ref|NP_461485.1| anaerobic sulfide reductase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|29140839|ref|NP_804181.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62181114|ref|YP_217531.1| anaerobic sulfide reductase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|167549421|ref|ZP_02343180.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|167992677|ref|ZP_02573773.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168232125|ref|ZP_02657183.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168238290|ref|ZP_02663348.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168243336|ref|ZP_02668268.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168466692|ref|ZP_02700546.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168821468|ref|ZP_02833468.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194444809|ref|YP_002041812.1| sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449446|ref|YP_002046611.1| sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194471798|ref|ZP_03077782.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194735811|ref|YP_002115613.1| sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197249765|ref|YP_002147505.1| sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197263863|ref|ZP_03163937.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198244708|ref|YP_002216616.1| sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|200388883|ref|ZP_03215495.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204929566|ref|ZP_03220640.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205353648|ref|YP_002227449.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857958|ref|YP_002244609.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213163624|ref|ZP_03349334.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425304|ref|ZP_03358054.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213583918|ref|ZP_03365744.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] gi|213618813|ref|ZP_03372639.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213646418|ref|ZP_03376471.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|224582910|ref|YP_002636708.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238912671|ref|ZP_04656508.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289825397|ref|ZP_06544634.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|60391778|sp|P0A1Y2|ASRC_SALTY RecName: Full=Anaerobic sulfite reductase subunit C gi|60391779|sp|P0A1Y3|ASRC_SALTI RecName: Full=Anaerobic sulfite reductase subunit C gi|25387614|pir||AE0825 anaerobic sulfite reductase chain C (EC 1.8.1.-) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16421096|gb|AAL21444.1| anaerobic sulfide reductase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|16503764|emb|CAD02753.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Typhi] gi|29136464|gb|AAO68030.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|62128747|gb|AAX66450.1| anaerobic sulfide reductase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194403472|gb|ACF63694.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407750|gb|ACF67969.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194458162|gb|EDX47001.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194711313|gb|ACF90534.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|195630754|gb|EDX49346.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197213468|gb|ACH50865.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197242118|gb|EDY24738.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197288804|gb|EDY28177.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197939224|gb|ACH76557.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|199605981|gb|EDZ04526.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204321285|gb|EDZ06485.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205273429|emb|CAR38405.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205325275|gb|EDZ13114.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205329116|gb|EDZ15880.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205333579|gb|EDZ20343.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205337685|gb|EDZ24449.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205341941|gb|EDZ28705.1| sulfite reductase, subunit C [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206709761|emb|CAR34113.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224467437|gb|ACN45267.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|261247746|emb|CBG25574.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994674|gb|ACY89559.1| anaerobic sulfide reductase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159099|emb|CBW18613.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913539|dbj|BAJ37513.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320087048|emb|CBY96817.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321222746|gb|EFX47817.1| Anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322613320|gb|EFY10262.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620476|gb|EFY17341.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625056|gb|EFY21885.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629500|gb|EFY26276.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322633887|gb|EFY30626.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635493|gb|EFY32204.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639831|gb|EFY36510.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644283|gb|EFY40827.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322652250|gb|EFY48607.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654842|gb|EFY51159.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658230|gb|EFY54496.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322669679|gb|EFY65825.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673314|gb|EFY69419.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322674897|gb|EFY70984.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322682920|gb|EFY78938.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685581|gb|EFY81576.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322715604|gb|EFZ07175.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323130880|gb|ADX18310.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|323194692|gb|EFZ79882.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200376|gb|EFZ85457.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323201276|gb|EFZ86343.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208346|gb|EFZ93286.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211578|gb|EFZ96416.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323216010|gb|EGA00742.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221917|gb|EGA06311.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225602|gb|EGA09829.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229319|gb|EGA13443.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235366|gb|EGA19450.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237448|gb|EGA21511.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245203|gb|EGA29204.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248777|gb|EGA32704.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254043|gb|EGA37864.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323254908|gb|EGA38700.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262013|gb|EGA45578.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323267797|gb|EGA51278.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269644|gb|EGA53096.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326624371|gb|EGE30716.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628750|gb|EGE35093.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332989477|gb|AEF08460.1| anaerobic sulfide reductase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 337 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 29/94 (30%), Gaps = 8/94 (8%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 + P + S G + + +RCI C C C A+ + Sbjct: 147 KTVIVGCPNDCAKASMADLGIIGVAKMRFTADRCIGCGACVKACSHHAVGCLALKNGKAV 206 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + CI CG C ACP A P+ Sbjct: 207 K--------EESACIGCGECVLACPTLAWQRKPD 232 >gi|308388428|gb|ADO30748.1| putative ferredoxin [Neisseria meningitidis alpha710] Length = 279 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CPA AI + + + +C CGLC CPVD I Sbjct: 75 DETACIGCTACIRACPADAIMGAGK----------LMHTVIADECTGCGLCVAPCPVDCI 124 Query: 119 VEGP 122 P Sbjct: 125 HMQP 128 Score = 35.1 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 12/23 (52%), Positives = 13/23 (56%) Query: 97 DIDMIKCIYCGLCQEACPVDAIV 119 ID CI C C ACP DAI+ Sbjct: 73 RIDETACIGCTACIRACPADAIM 95 >gi|296313314|ref|ZP_06863255.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria polysaccharea ATCC 43768] gi|296840194|gb|EFH24132.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria polysaccharea ATCC 43768] Length = 279 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CPA AI + + + +C CGLC CPVD I Sbjct: 75 DETACIGCTACIRACPADAIMGAGK----------LMHTVIADECTGCGLCVAPCPVDCI 124 Query: 119 VEGP 122 P Sbjct: 125 HMQP 128 Score = 35.1 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 12/23 (52%), Positives = 13/23 (56%) Query: 97 DIDMIKCIYCGLCQEACPVDAIV 119 ID CI C C ACP DAI+ Sbjct: 73 RIDETACIGCTACIRACPADAIM 95 >gi|261391743|emb|CAX49192.1| putative ferredoxin [Neisseria meningitidis 8013] gi|325197493|gb|ADY92949.1| iron-sulfur cluster-binding protein [Neisseria meningitidis G2136] Length = 279 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CPA AI + + + +C CGLC CPVD I Sbjct: 75 DETACIGCTACIRACPADAIMGAGK----------LMHTVIADECTGCGLCVAPCPVDCI 124 Query: 119 VEGP 122 P Sbjct: 125 HMQP 128 Score = 35.1 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 12/23 (52%), Positives = 13/23 (56%) Query: 97 DIDMIKCIYCGLCQEACPVDAIV 119 ID CI C C ACP DAI+ Sbjct: 73 RIDETACIGCTACIRACPADAIM 95 >gi|254673479|emb|CBA08875.1| putative ferredoxin [Neisseria meningitidis alpha275] Length = 279 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CPA AI + + + +C CGLC CPVD I Sbjct: 75 DESACIGCTACIRACPADAIMGAGK----------LMHTVIADECTGCGLCVAPCPVDCI 124 Query: 119 VEGP 122 P Sbjct: 125 HMQP 128 Score = 35.5 bits (80), Expect = 2.9, Method: Composition-based stats. Identities = 12/23 (52%), Positives = 13/23 (56%) Query: 97 DIDMIKCIYCGLCQEACPVDAIV 119 ID CI C C ACP DAI+ Sbjct: 73 RIDESACIGCTACIRACPADAIM 95 >gi|257126678|ref|YP_003164792.1| electron transport complex, RnfABCDGE type, C subunit [Leptotrichia buccalis C-1013-b] gi|257050617|gb|ACV39801.1| electron transport complex, RnfABCDGE type, C subunit [Leptotrichia buccalis C-1013-b] Length = 458 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 1/75 (1%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 + G L + E CI+C C CP + E G + + Sbjct: 362 RIPVIKGTSGILFLSKEEIERESCISCGYCVEACPMNLMPFEFADYYEKG-KYEKMIKAN 420 Query: 100 MIKCIYCGLCQEACP 114 + CI CG C+ CP Sbjct: 421 IQNCIECGACEFVCP 435 Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 17/61 (27%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNI 156 +I+ CI CG C EACP++ + FEFA Y+K ++E I NI Sbjct: 379 EIERESCISCGYCVEACPMNLMP----FEFADY------YEK-------GKYEKMIKANI 421 Query: 157 V 157 Sbjct: 422 Q 422 >gi|224369370|ref|YP_002603534.1| HdrA4 [Desulfobacterium autotrophicum HRM2] gi|223692087|gb|ACN15370.1| HdrA4 [Desulfobacterium autotrophicum HRM2] Length = 1161 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 27/88 (30%), Gaps = 7/88 (7%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPA-------QAITIESGPRCHDGTRRTVRY 96 + RC C LC +CP ++ Y Sbjct: 99 PGNYHATLESPVPIVDPNRCTGCNLCAQVCPVSIDDPFNHGLSRTKAIYLPVPHAVPNIY 158 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNF 124 IDM C CG C++ CP DAI + Sbjct: 159 TIDMNHCTLCGECEQTCPFDAITLPADH 186 Score = 41.2 bits (95), Expect = 0.053, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 17/51 (33%), Gaps = 9/51 (17%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 C C C C A T++ R ID I C CG C C Sbjct: 1097 CSVCGRCIDACAFGARTLDPDTN---------RIKIDPIICQGCGACASVC 1138 Score = 35.1 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 16/35 (45%) Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 E P + T + +D +C C LC + CPV Sbjct: 96 EGEPGNYHATLESPVPIVDPNRCTGCNLCAQVCPV 130 Score = 33.5 bits (75), Expect = 9.9, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 21/72 (29%), Gaps = 4/72 (5%) Query: 31 KTTINYPFE----KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC 86 +I+ PF + Y C C CE CP AIT+ + R Sbjct: 129 PVSIDDPFNHGLSRTKAIYLPVPHAVPNIYTIDMNHCTLCGECEQTCPFDAITLPADHRK 188 Query: 87 HDGTRRTVRYDI 98 + I Sbjct: 189 NFKILVVDDEQI 200 >gi|121634081|ref|YP_974326.1| putative ferredoxin [Neisseria meningitidis FAM18] gi|120865787|emb|CAM09516.1| putative ferredoxin [Neisseria meningitidis FAM18] gi|325133026|gb|EGC55699.1| iron-sulfur cluster-binding protein [Neisseria meningitidis M6190] gi|325139098|gb|EGC61644.1| iron-sulfur cluster-binding protein [Neisseria meningitidis ES14902] Length = 279 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CPA AI + + + +C CGLC CPVD I Sbjct: 75 DETACIGCTACIRACPADAIMGAGK----------LMHTVIADECTGCGLCVAPCPVDCI 124 Query: 119 VEGP 122 P Sbjct: 125 HMQP 128 Score = 35.1 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 12/23 (52%), Positives = 13/23 (56%) Query: 97 DIDMIKCIYCGLCQEACPVDAIV 119 ID CI C C ACP DAI+ Sbjct: 73 RIDETACIGCTACIRACPADAIM 95 >gi|160878251|ref|YP_001557219.1| ferredoxin hydrogenase [Clostridium phytofermentans ISDg] gi|160426917|gb|ABX40480.1| Ferredoxin hydrogenase [Clostridium phytofermentans ISDg] Length = 484 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110 +C C +C + CP AI P + D ID KCI CG C Sbjct: 126 HIDPAKCKECGMCASACPYNAIADLKRPCKKSCPVDAISMDENNIVVIDEEKCINCGQCI 185 Query: 111 EACPVDAI 118 CP AI Sbjct: 186 NNCPFGAI 193 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 20/61 (32%), Gaps = 5/61 (8%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCIYCGLCQEACPVDA 117 C C + + + R ID KC CG+C ACP +A Sbjct: 87 CEECPITRFLVTDNCQKCMGKRCQKACNFQAISMSHDRAHIDPAKCKECGMCASACPYNA 146 Query: 118 I 118 I Sbjct: 147 I 147 >gi|29828378|ref|NP_823012.1| NADH dehydrogenase I chain G [Streptomyces avermitilis MA-4680] gi|29605481|dbj|BAC69547.1| putative NADH dehydrogenase I chain G (complex I) [Streptomyces avermitilis MA-4680] Length = 286 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 4/75 (5%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM----IKCIYCGLCQE 111 Y ++CI C C C Q + G + + D C+YCG C E Sbjct: 145 YVRDYDKCILCYKCVDACGDQWQNTFAISVVGRGFDARIAVEHDAPLTDSACVYCGNCVE 204 Query: 112 ACPVDAIVEGPNFEF 126 CP A+ F+ Sbjct: 205 VCPTGALSFKSEFDM 219 >gi|167758102|ref|ZP_02430229.1| hypothetical protein CLOSCI_00440 [Clostridium scindens ATCC 35704] gi|167663999|gb|EDS08129.1| hypothetical protein CLOSCI_00440 [Clostridium scindens ATCC 35704] Length = 503 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQ 110 +++CI C C+++CP AI+ + P R I+ KC+ CG+C Sbjct: 148 YIDQDKCIKCGKCKSVCPYDAISKKERPCQKACGVGAIESDNMGRAHINNDKCVSCGMCM 207 Query: 111 EACPVDAI 118 +CP AI Sbjct: 208 VSCPFGAI 215 Score = 41.6 bits (96), Expect = 0.039, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 13/64 (20%) Query: 57 PNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 C C C +CP AI++ G ID KCI CG C+ CP Sbjct: 117 YEVSNMCKGCLAHPCIEVCPKDAISMVGGKSY-----------IDQDKCIKCGKCKSVCP 165 Query: 115 VDAI 118 DAI Sbjct: 166 YDAI 169 >gi|158522308|ref|YP_001530178.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfococcus oleovorans Hxd3] gi|158511134|gb|ABW68101.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus oleovorans Hxd3] Length = 378 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 8/63 (12%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C A C AI + + I+ KC+ CG C CP ++ Sbjct: 200 KTCIGCGDCVAHCAHGAIRLVKEGE--------KKALINEEKCVGCGECIVVCPTGSVQI 251 Query: 121 GPN 123 N Sbjct: 252 QWN 254 >gi|104780426|ref|YP_606924.1| lectron transport complex protein RnfB [Pseudomonas entomophila L48] gi|95109413|emb|CAK14113.1| putative lectron transport complex protein RnfB [Pseudomonas entomophila L48] Length = 254 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 30/84 (35%), Gaps = 10/84 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 RG+ + E CI C C CP AI S + + + Sbjct: 57 VPIIAPDTTRGQAPAQVASIREAECIGCTKCIQACPVDAIVGASK----------LMHTV 106 Query: 99 DMIKCIYCGLCQEACPVDAIVEGP 122 I+C C LC ACPVD I P Sbjct: 107 IAIECTGCDLCLPACPVDCIDMRP 130 >gi|116748266|ref|YP_844953.1| response regulator receiver modulated FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Syntrophobacter fumaroxidans MPOB] gi|116697330|gb|ABK16518.1| response regulator receiver modulated FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Syntrophobacter fumaroxidans MPOB] Length = 1139 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 27/84 (32%), Gaps = 7/84 (8%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR-------Y 96 +F R ERC C C +CP + + Y Sbjct: 99 PGKFVATLRYRPSLIDPERCNGCGECTRVCPVEVPDEFNAGLATRKAVYLPVPHNLPNSY 158 Query: 97 DIDMIKCIYCGLCQEACPVDAIVE 120 ID C +CG CQ ACP AI Sbjct: 159 VIDTDACNHCGACQNACPTGAIDL 182 Score = 42.0 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 19/58 (32%), Gaps = 9/58 (15%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 C C+ C CP A + R +D C CG C ACP A Sbjct: 1071 HSLCSLCERCVVACPFHARWYDEEEE---------RIVVDEFVCQGCGACSAACPNGA 1119 >gi|332704183|ref|ZP_08424271.1| Glutamate synthase (NADPH) [Desulfovibrio africanus str. Walvis Bay] gi|332554332|gb|EGJ51376.1| Glutamate synthase (NADPH) [Desulfovibrio africanus str. Walvis Bay] Length = 507 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 12/83 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E CI C++C C A + D KC+ C C+ CP + Sbjct: 18 DKEACINCEVCVRQCSYGAHFWDD---------VRKSVRHDSSKCVGCHRCEAFCPTACL 68 Query: 119 VEGPNFEFATETRQELYYDKERL 141 TE R+ ++ + L Sbjct: 69 TIRH---KPTEFRENAVWNPKFL 88 >gi|320100963|ref|YP_004176555.1| indolepyruvate ferredoxin oxidoreductase subunit alpha [Desulfurococcus mucosus DSM 2162] gi|319753315|gb|ADV65073.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Desulfurococcus mucosus DSM 2162] Length = 637 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 26/71 (36%), Gaps = 9/71 (12%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R L Y E++C C C + AI I +G R I C CG Sbjct: 562 RRRVVLPVYTVIEDKCTGCNACINLTACPAIVIPTGSRKPV---------ILEELCAGCG 612 Query: 108 LCQEACPVDAI 118 LC CP AI Sbjct: 613 LCASICPFKAI 623 >gi|319411308|emb|CBY91719.1| putative ferredoxin [Neisseria meningitidis WUE 2594] gi|325130942|gb|EGC53669.1| iron-sulfur cluster-binding protein [Neisseria meningitidis OX99.30304] gi|325135016|gb|EGC57644.1| iron-sulfur cluster-binding protein [Neisseria meningitidis M13399] gi|325137038|gb|EGC59634.1| iron-sulfur cluster-binding protein [Neisseria meningitidis M0579] gi|325202960|gb|ADY98414.1| iron-sulfur cluster-binding protein [Neisseria meningitidis M01-240149] gi|325207242|gb|ADZ02694.1| iron-sulfur cluster-binding protein [Neisseria meningitidis NZ-05/33] Length = 279 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CPA AI + + + +C CGLC CPVD I Sbjct: 75 DETACIGCTACIRACPADAIMGAGK----------LMHTVIADECTGCGLCVAPCPVDCI 124 Query: 119 VEGP 122 P Sbjct: 125 HMQP 128 Score = 35.1 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 12/23 (52%), Positives = 13/23 (56%) Query: 97 DIDMIKCIYCGLCQEACPVDAIV 119 ID CI C C ACP DAI+ Sbjct: 73 RIDETACIGCTACIRACPADAIM 95 >gi|296449690|ref|ZP_06891460.1| periplasmic hydrogenase 1 [Clostridium difficile NAP08] gi|296877993|ref|ZP_06902012.1| periplasmic hydrogenase 1 [Clostridium difficile NAP07] gi|296261414|gb|EFH08239.1| periplasmic hydrogenase 1 [Clostridium difficile NAP08] gi|296431061|gb|EFH16889.1| periplasmic hydrogenase 1 [Clostridium difficile NAP07] Length = 509 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 7/71 (9%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT-------RRTVRYDIDMIKCIYCG 107 E C AC +C+ C AI+ P R ++ I KC+ CG Sbjct: 147 MAYINHELCKACGMCKKACQYDAISEVVRPCKSVCPTNALGFDRENMKAMIHEEKCLNCG 206 Query: 108 LCQEACPVDAI 118 C ACP AI Sbjct: 207 ACMSACPFGAI 217 >gi|288561338|ref|YP_003424824.1| glutamate synthase alpha subunit GltA [Methanobrevibacter ruminantium M1] gi|288544048|gb|ADC47932.1| glutamate synthase alpha subunit GltA [Methanobrevibacter ruminantium M1] Length = 495 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 10/68 (14%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C C C + CP + + I C+ C +C+E CP Sbjct: 26 CDNPNKSACKNCYSCYSNCPHGVYEVINDEPLP----------IHQENCVGCKICEEMCP 75 Query: 115 VDAIVEGP 122 AI P Sbjct: 76 THAIYVRP 83 >gi|170726904|ref|YP_001760930.1| electron transport complex protein RnfC [Shewanella woodyi ATCC 51908] gi|169812251|gb|ACA86835.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella woodyi ATCC 51908] Length = 784 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 3/102 (2%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 CI C C +CPAQ + + ++ CI CG C CP I Sbjct: 383 PCIRCGECAVVCPAQ-LLPQQLFWHSKAQEYDKAVSYNLNDCIECGCCSYVCP-SNIPLV 440 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + A + +K++ R+E + + + R Sbjct: 441 EYYRVAKSAVKNEIEEKKQAELAKQRFELR-TQRLEDEKLAR 481 >gi|91202656|emb|CAJ72295.1| similar to molybdopterin oxidoreductase, molybdopterin-containing subunit/ NuoG subunit of NADH dehydrogenase I [Candidatus Kuenenia stuttgartiensis] Length = 896 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 5/81 (6%) Query: 57 PNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEAC 113 +CI C C IC Q + + TR + ++ M C++CG C C Sbjct: 140 YRDMNKCIMCGKCVRICDEVQGQHVWTFSDRGIKTRVSTAFEKSMQDGGCVFCGHCVSVC 199 Query: 114 PVDAIVEGPNFEFA--TETRQ 132 PV A+++ P + A ETR+ Sbjct: 200 PVGALMDKPVMKKARSWETRK 220 >gi|11498785|ref|NP_070014.1| iron-sulfur cluster binding protein [Archaeoglobus fulgidus DSM 4304] gi|2649398|gb|AAB90058.1| iron-sulfur cluster binding protein [Archaeoglobus fulgidus DSM 4304] Length = 131 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 10/68 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L +E+C+ C C +ICP +AI I R I+ KC++CG C + Sbjct: 72 LEAVQKDDEKCVHCGACVSICPTEAIYINGDKRVA----------INTEKCVHCGSCVKV 121 Query: 113 CPVDAIVE 120 CP A+ Sbjct: 122 CPTRALSL 129 >gi|304389020|ref|ZP_07371066.1| iron-sulfur cluster-binding protein [Neisseria meningitidis ATCC 13091] gi|304337001|gb|EFM03189.1| iron-sulfur cluster-binding protein [Neisseria meningitidis ATCC 13091] Length = 279 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CPA AI + + + +C CGLC CPVD I Sbjct: 75 DETACIGCTACIRACPADAIMGAGK----------LMHTVIADECTGCGLCVAPCPVDCI 124 Query: 119 VEGP 122 P Sbjct: 125 HMQP 128 Score = 35.1 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 12/23 (52%), Positives = 13/23 (56%) Query: 97 DIDMIKCIYCGLCQEACPVDAIV 119 ID CI C C ACP DAI+ Sbjct: 73 RIDETACIGCTACIRACPADAIM 95 >gi|303240081|ref|ZP_07326602.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Acetivibrio cellulolyticus CD2] gi|302592350|gb|EFL62077.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Acetivibrio cellulolyticus CD2] Length = 1181 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 16/101 (15%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES--------------- 82 FE G+++ RG ++C+ C +C +C I Sbjct: 673 FEMGASAYEKRGTAVNVPQW-DPQKCVQCTMCSFVCSHATIRPFMLSEDEVKAAPSNIKL 731 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + + + C+ CG C CP AI P Sbjct: 732 ADSKPKASEYKFTMSVTPLDCMGCGECITVCPAKAIEMVPQ 772 >gi|254670133|emb|CBA05130.1| putative ferredoxin [Neisseria meningitidis alpha153] Length = 279 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CPA AI + + + +C CGLC CPVD I Sbjct: 75 DETACIGCTACIRACPADAIMGAGK----------LMHTVIADECTGCGLCVAPCPVDCI 124 Query: 119 VEGP 122 P Sbjct: 125 HMQP 128 Score = 35.1 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 12/23 (52%), Positives = 13/23 (56%) Query: 97 DIDMIKCIYCGLCQEACPVDAIV 119 ID CI C C ACP DAI+ Sbjct: 73 RIDETACIGCTACIRACPADAIM 95 >gi|238917328|ref|YP_002930845.1| ferredoxin hydrogenase [Eubacterium eligens ATCC 27750] gi|238872688|gb|ACR72398.1| ferredoxin hydrogenase [Eubacterium eligens ATCC 27750] Length = 489 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 26/68 (38%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110 ++C C +C CP AI P + D ID KCI CG C Sbjct: 128 YIDPDKCKECGMCAKACPYNAIADLIRPCKKICPANAITMDENGICEIDENKCIQCGQCI 187 Query: 111 EACPVDAI 118 ACP AI Sbjct: 188 HACPFGAI 195 >gi|225175969|ref|ZP_03729961.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dethiobacter alkaliphilus AHT 1] gi|225168557|gb|EEG77359.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dethiobacter alkaliphilus AHT 1] Length = 369 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 23/63 (36%), Gaps = 11/63 (17%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C C CPA AI I +ID KCI CG C CP AI Sbjct: 196 CKVCSTCLKWCPADAILIMEETA-----------EIDHDKCIGCGECTVVCPTRAIKIQW 244 Query: 123 NFE 125 E Sbjct: 245 KSE 247 >gi|225405722|ref|ZP_03760911.1| hypothetical protein CLOSTASPAR_04943 [Clostridium asparagiforme DSM 15981] gi|225042746|gb|EEG52992.1| hypothetical protein CLOSTASPAR_04943 [Clostridium asparagiforme DSM 15981] Length = 484 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 26/68 (38%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110 +C +C C CP AI P + YD ID KCI CG C Sbjct: 125 YIDPAKCKSCGKCSQACPYNAIAHLERPCKKSCPVDAITYDEYGICEIDEKKCIECGNCV 184 Query: 111 EACPVDAI 118 +CP AI Sbjct: 185 HSCPFGAI 192 >gi|209884426|ref|YP_002288283.1| NADH dehydrogenase i chain g [Oligotropha carboxidovorans OM5] gi|209872622|gb|ACI92418.1| NADH dehydrogenase i chain g [Oligotropha carboxidovorans OM5] Length = 319 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 4/75 (5%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT----VRYDIDMIKCIYCGLCQE 111 Y ++CI C C C Q + G ++ C++CG C E Sbjct: 170 YVREYDKCILCYKCVDACGTQWQNSFAIQIAGRGFDAQISTEFAVELPESACVFCGNCVE 229 Query: 112 ACPVDAIVEGPNFEF 126 CP A+ ++ Sbjct: 230 VCPTGALSFKSEYDM 244 >gi|168184462|ref|ZP_02619126.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum Bf] gi|237796254|ref|YP_002863806.1| dihydropyrimidine dehydrogenase [Clostridium botulinum Ba4 str. 657] gi|182672460|gb|EDT84421.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum Bf] gi|229261448|gb|ACQ52481.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum Ba4 str. 657] Length = 411 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 7/110 (6%) Query: 15 EFVGAFFLCLRY-FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + + ++ FK + K + +E C+ C C C Sbjct: 295 DMIEGLSYYMKEKGFKKLEDMVGLANKNIIPAEDLDRGYIVYPKFNKENCVGCGRCYISC 354 Query: 74 PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 G + + + ++ C+ C LC CPV I +G Sbjct: 355 YDG------GHQAIKWDGKNRKPILEKENCVGCHLCANVCPVQCISKGEI 398 >gi|126698470|ref|YP_001087367.1| iron-dependent hydrogenase [Clostridium difficile 630] gi|260682591|ref|YP_003213876.1| iron-dependent hydrogenase [Clostridium difficile CD196] gi|260686191|ref|YP_003217324.1| iron-dependent hydrogenase [Clostridium difficile R20291] gi|260208754|emb|CBA61609.1| iron-dependent hydrogenase [Clostridium difficile CD196] gi|260212207|emb|CBE02898.1| iron-dependent hydrogenase [Clostridium difficile R20291] Length = 509 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 7/71 (9%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT-------RRTVRYDIDMIKCIYCG 107 E C AC +C+ C AI+ P R ++ I KC+ CG Sbjct: 147 MAYINHELCKACGMCKKACQYDAISEVVRPCKSVCPTNALGFDRENMKAMIHEDKCLNCG 206 Query: 108 LCQEACPVDAI 118 C ACP AI Sbjct: 207 ACMSACPFGAI 217 >gi|119719691|ref|YP_920186.1| thiamine pyrophosphate binding domain-containing protein [Thermofilum pendens Hrk 5] gi|119524811|gb|ABL78183.1| indolepyruvate ferredoxin oxidoreductase, subunit iorA [Thermofilum pendens Hrk 5] Length = 623 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 10/69 (14%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + Y +ERC+ C +C AI E R I C+ CG+C Sbjct: 558 ERVVPYYVDQERCVRCGICVDKFSCPAIVREEDGRVV----------ILPEVCVGCGVCA 607 Query: 111 EACPVDAIV 119 CP AI Sbjct: 608 TICPAKAIH 616 >gi|323526712|ref|YP_004228865.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia sp. CCGE1001] gi|323383714|gb|ADX55805.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia sp. CCGE1001] Length = 414 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 11/68 (16%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 LR++ E CI C CE CP AIT + Y + C C C Sbjct: 8 EVLRQHLIDPEICIRCNTCEETCPIDAITHDDN-----------NYVVRADVCNGCMACV 56 Query: 111 EACPVDAI 118 CP AI Sbjct: 57 PPCPTGAI 64 Score = 37.0 bits (84), Expect = 0.86, Method: Composition-based stats. Identities = 13/26 (50%), Positives = 15/26 (57%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPN 123 ID CI C C+E CP+DAI N Sbjct: 15 IDPEICIRCNTCEETCPIDAITHDDN 40 >gi|56412572|ref|YP_149647.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197361507|ref|YP_002141143.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56126829|gb|AAV76335.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197092983|emb|CAR58415.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 337 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 29/94 (30%), Gaps = 8/94 (8%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 + P + S G + + +RCI C C C A+ + Sbjct: 147 KTVIVGCPNDCAKASMADLGIIGVAKMRFTADRCIGCGACVKACSHHAVGCLALKNGKAV 206 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + CI CG C ACP A P+ Sbjct: 207 K--------EESACIGCGECVLACPTLAWQRKPD 232 >gi|308233843|ref|ZP_07664580.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Atopobium vaginae DSM 15829] Length = 953 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 24/129 (18%), Positives = 44/129 (34%), Gaps = 28/129 (21%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 +E G+ + RG + + + +CI C C +CP I + Sbjct: 447 YELGTAAYEKRGVAVMVPHWDE-TKCIQCNNCSFVCPHSTIRPIAMTEAEAAAAPAQMRM 505 Query: 98 ID----------------MIKCIYCGLCQEACPVDAIVEGP---------NFEFATETRQ 132 ID + C+ C C CP D + P +++A + + Sbjct: 506 IDAKGKGADGLKFAIAVSPLDCMGCTNCVYVCPKDCLTMVPTEQELDQQEVWDYAVD--E 563 Query: 133 ELYYDKERL 141 + +KE+L Sbjct: 564 DNVSEKEQL 572 >gi|309792297|ref|ZP_07686769.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [Oscillochloris trichoides DG6] gi|308225838|gb|EFO79594.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [Oscillochloris trichoides DG6] Length = 1182 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 27/92 (29%), Gaps = 16/92 (17%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPR 85 +T+ + AL E+ CI C C +CP A Sbjct: 669 PTATTQWEKRNLALEIPVWDEKICIQCGKCAFVCPHAVIRSKVYQPDALAGAPDTFKSVD 728 Query: 86 CHDGTRRTVRY--DIDMIKCIYCGLCQEACPV 115 RY + C C LC E CPV Sbjct: 729 ARFKELPGQRYTLQVSPEDCTGCALCVEVCPV 760 Score = 34.3 bits (77), Expect = 6.4, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 16/56 (28%), Gaps = 13/56 (23%) Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158 CI CG C CP I Y + L D ++S R Sbjct: 692 CIQCGKCAFVCPHAVIRSK-------------VYQPDALAGAPDTFKSVDARFKEL 734 >gi|240145814|ref|ZP_04744415.1| periplasmic [Fe] hydrogenase 1 [Roseburia intestinalis L1-82] gi|257202092|gb|EEV00377.1| periplasmic [Fe] hydrogenase 1 [Roseburia intestinalis L1-82] Length = 348 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110 +C C C CP AI P + Y+ ID KCI CG C Sbjct: 124 HIDPSKCKECGRCAQACPYNAIAHLKRPCKFSCPVNAITYNEYGISVIDKEKCIRCGKCI 183 Query: 111 EACPVDAI 118 +CP AI Sbjct: 184 HSCPFGAI 191 >gi|59802094|ref|YP_208806.1| putative ferredoxin [Neisseria gonorrhoeae FA 1090] gi|194099985|ref|YP_002003124.1| putative ferredoxin [Neisseria gonorrhoeae NCCP11945] gi|239997992|ref|ZP_04717916.1| putative ferredoxin [Neisseria gonorrhoeae 35/02] gi|240017478|ref|ZP_04724018.1| putative ferredoxin [Neisseria gonorrhoeae FA6140] gi|268593845|ref|ZP_06128012.1| ferredoxin [Neisseria gonorrhoeae 35/02] gi|293398133|ref|ZP_06642338.1| electron transport complex protein RnfB [Neisseria gonorrhoeae F62] gi|59718989|gb|AAW90394.1| putative ferredoxin [Neisseria gonorrhoeae FA 1090] gi|193935275|gb|ACF31099.1| putative ferredoxin [Neisseria gonorrhoeae NCCP11945] gi|268547234|gb|EEZ42652.1| ferredoxin [Neisseria gonorrhoeae 35/02] gi|291611396|gb|EFF40466.1| electron transport complex protein RnfB [Neisseria gonorrhoeae F62] gi|317165435|gb|ADV08976.1| putative ferredoxin [Neisseria gonorrhoeae TCDC-NG08107] Length = 279 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CPA AI + + + +C CGLC CPVD I Sbjct: 75 DETACIGCTACIRACPADAIMGAGK----------LMHTVITDECTGCGLCVAPCPVDCI 124 Query: 119 VEGP 122 P Sbjct: 125 HMQP 128 Score = 35.1 bits (79), Expect = 3.5, Method: Composition-based stats. Identities = 12/23 (52%), Positives = 13/23 (56%) Query: 97 DIDMIKCIYCGLCQEACPVDAIV 119 ID CI C C ACP DAI+ Sbjct: 73 RIDETACIGCTACIRACPADAIM 95 >gi|167037063|ref|YP_001664641.1| cobyrinic acid a,c-diamide synthase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320115478|ref|YP_004185637.1| cobyrinic acid a,c-diamide synthase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166855897|gb|ABY94305.1| Cobyrinic acid a,c-diamide synthase [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319928569|gb|ADV79254.1| cobyrinic acid a,c-diamide synthase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 291 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 42/110 (38%), Gaps = 22/110 (20%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE-------ERCIACKLCEAIC 73 L K K + E + + +GE +R G+ ++CI C LCE +C Sbjct: 19 ATTLSTIVKNKIMADCDVEAPNLNIVLQGEIIEKRDFYGKETAVIDKDKCIECGLCEELC 78 Query: 74 PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 AI+ ++++ C CGLC CPV+AI Sbjct: 79 RFDAISN---------------FEVNPYYCEGCGLCMYKCPVEAIKLIEE 113 >gi|312622083|ref|YP_004023696.1| pyruvate/ketoisovalerate oxidoreductase subunit gamma [Caldicellulosiruptor kronotskyensis 2002] gi|312202550|gb|ADQ45877.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit [Caldicellulosiruptor kronotskyensis 2002] Length = 339 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 8/91 (8%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E+CI C LCE CP + +G + D C C C + CP A+VE Sbjct: 252 EKCINCGLCETTCPD--YVFVWDRKVENGKSKMFNLGPDYQYCKGCLRCVDICPTGALVE 309 Query: 121 GPNFEFATET---RQEL-YYDKERLLNNGDR 147 G E+ E + + Y+K +G++ Sbjct: 310 GIEREYDIEKISAKHDFDIYEKW--YEDGEK 338 >gi|312898883|ref|ZP_07758271.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Megasphaera micronuciformis F0359] gi|310620045|gb|EFQ03617.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Megasphaera micronuciformis F0359] Length = 1172 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 35/99 (35%), Gaps = 18/99 (18%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAIT---------------IESGPRCHDGTRRTVR 95 AL E+CI C C +CP I + P+ G Sbjct: 676 PALYVPSWDAEKCIGCVQCSFVCPHATIRPVLTTEEERAKAPAGFVTAPKAKSGKEYGFT 735 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134 +D + C+ CG C CP A+ PN E E R ++ Sbjct: 736 IVVDQLDCLECGSCANVCPAKALTMVPNTE---EERAKM 771 >gi|77918361|ref|YP_356176.1| MinD family ATPase [Pelobacter carbinolicus DSM 2380] gi|77544444|gb|ABA88006.1| MinD superfamily P-loop ATPase [Pelobacter carbinolicus DSM 2380] Length = 299 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 26/82 (31%), Gaps = 4/82 (4%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100 T ++ +C C C+ +C +A+ Y ID Sbjct: 46 PPTPLSSHPFSGGKQAFIETAKCQLCGTCQKLCRFEAVRGPDTQSGSP----ESGYSIDS 101 Query: 101 IKCIYCGLCQEACPVDAIVEGP 122 C CG+C CP +AI Sbjct: 102 TACEGCGVCAHFCPAEAIRFTD 123 >gi|78067137|ref|YP_369906.1| ferredoxin [Burkholderia sp. 383] gi|77967882|gb|ABB09262.1| Electron transport complex, RnfABCDGE type, B subunit [Burkholderia sp. 383] Length = 334 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 22/66 (33%), Gaps = 10/66 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C LC CP AI + I C C LC CPVD Sbjct: 113 FIDESLCIGCTLCMQACPVDAIVGAPKQ----------MHTIIESLCTGCDLCVPPCPVD 162 Query: 117 AIVEGP 122 I P Sbjct: 163 CIAMLP 168 >gi|289547804|ref|YP_003472792.1| NADH:ubiquinone oxidoreductase, subunit G, iron- sulphur binding protein [Thermocrinis albus DSM 14484] gi|289181421|gb|ADC88665.1| NADH:ubiquinone oxidoreductase, subunit G, iron- sulphur binding protein [Thermocrinis albus DSM 14484] Length = 636 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 26/86 (30%), Positives = 32/86 (37%), Gaps = 6/86 (6%) Query: 61 ERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RC+ C C +C A + R +D C CGLC CPV AI Sbjct: 149 NRCVVCYRCTRVCDEVVGARALYVEERGFHTNIVPAVRPMDTSSCEMCGLCVYVCPVGAI 208 Query: 119 VEGPNFEFATETRQELYYDKERLLNN 144 + P F TR K+R L N Sbjct: 209 ISKP---FKYWTRS-WLLKKDRTLCN 230 >gi|262066998|ref|ZP_06026610.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Fusobacterium periodonticum ATCC 33693] gi|291379285|gb|EFE86803.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Fusobacterium periodonticum ATCC 33693] Length = 1189 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 44/124 (35%), Gaps = 25/124 (20%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-------------QAITIESGP 84 FE G+++ RG N ++CI C C +CP +A IE Sbjct: 676 FENGTSAFEKRGVAVDVPIWN-IDKCIQCNQCSYVCPHAVIRPFLINEEELKASPIELAT 734 Query: 85 RCHDGTRRT---VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERL 141 + G R + + C+ CG C CP +A+ P + DKE + Sbjct: 735 KKPTGKGLDGLGYRIQVSTLDCVGCGSCAHVCPANALDMMPI--------ADSLNDKEDI 786 Query: 142 LNNG 145 + Sbjct: 787 KADY 790 >gi|254805750|ref|YP_003083971.1| putative ferredoxin [Neisseria meningitidis alpha14] gi|254669291|emb|CBA08254.1| putative ferredoxin [Neisseria meningitidis alpha14] Length = 279 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CPA AI + + + +C CGLC CPVD I Sbjct: 75 DETACIGCTACIRACPADAIMGAGK----------LMHTVIADECTGCGLCVAPCPVDCI 124 Query: 119 VEGP 122 P Sbjct: 125 HMQP 128 Score = 35.1 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 12/23 (52%), Positives = 13/23 (56%) Query: 97 DIDMIKCIYCGLCQEACPVDAIV 119 ID CI C C ACP DAI+ Sbjct: 73 RIDETACIGCTACIRACPADAIM 95 >gi|227823015|ref|YP_002826987.1| dihydropyrimidine dehydrogenase [Sinorhizobium fredii NGR234] gi|227342016|gb|ACP26234.1| dihydropyrimidine dehydrogenase [Sinorhizobium fredii NGR234] Length = 437 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 6/78 (7%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI C C A S +++ +C+ Sbjct: 330 QYLNLNYVSKAKIDQDACIKCGRCHI-----ACEDTSHQAITQFVNGMRHFEVIEEECVG 384 Query: 106 CGLCQEACPV-DAIVEGP 122 C LC CPV + I P Sbjct: 385 CNLCVNVCPVENCITMEP 402 >gi|240015030|ref|ZP_04721943.1| putative ferredoxin [Neisseria gonorrhoeae DGI18] gi|240081619|ref|ZP_04726162.1| putative ferredoxin [Neisseria gonorrhoeae FA19] gi|240113900|ref|ZP_04728390.1| putative ferredoxin [Neisseria gonorrhoeae MS11] gi|240116632|ref|ZP_04730694.1| putative ferredoxin [Neisseria gonorrhoeae PID18] gi|240118855|ref|ZP_04732917.1| putative ferredoxin [Neisseria gonorrhoeae PID1] gi|240122098|ref|ZP_04735060.1| putative ferredoxin [Neisseria gonorrhoeae PID24-1] gi|240124392|ref|ZP_04737348.1| putative ferredoxin [Neisseria gonorrhoeae PID332] gi|240124736|ref|ZP_04737622.1| putative ferredoxin [Neisseria gonorrhoeae SK-92-679] gi|240129069|ref|ZP_04741730.1| putative ferredoxin [Neisseria gonorrhoeae SK-93-1035] gi|254494652|ref|ZP_05107823.1| ferredoxin [Neisseria gonorrhoeae 1291] gi|260439607|ref|ZP_05793423.1| putative ferredoxin [Neisseria gonorrhoeae DGI2] gi|268597712|ref|ZP_06131879.1| ferredoxin [Neisseria gonorrhoeae FA19] gi|268599961|ref|ZP_06134128.1| ferredoxin [Neisseria gonorrhoeae MS11] gi|268602297|ref|ZP_06136464.1| ferredoxin [Neisseria gonorrhoeae PID18] gi|268604560|ref|ZP_06138727.1| ferredoxin [Neisseria gonorrhoeae PID1] gi|268683016|ref|ZP_06149878.1| ferredoxin [Neisseria gonorrhoeae PID332] gi|268683315|ref|ZP_06150177.1| ferredoxin [Neisseria gonorrhoeae SK-92-679] gi|268687445|ref|ZP_06154307.1| ferredoxin [Neisseria gonorrhoeae SK-93-1035] gi|291042849|ref|ZP_06568590.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] gi|226513692|gb|EEH63037.1| ferredoxin [Neisseria gonorrhoeae 1291] gi|268551500|gb|EEZ46519.1| ferredoxin [Neisseria gonorrhoeae FA19] gi|268584092|gb|EEZ48768.1| ferredoxin [Neisseria gonorrhoeae MS11] gi|268586428|gb|EEZ51104.1| ferredoxin [Neisseria gonorrhoeae PID18] gi|268588691|gb|EEZ53367.1| ferredoxin [Neisseria gonorrhoeae PID1] gi|268623300|gb|EEZ55700.1| ferredoxin [Neisseria gonorrhoeae PID332] gi|268623599|gb|EEZ55999.1| ferredoxin [Neisseria gonorrhoeae SK-92-679] gi|268627729|gb|EEZ60129.1| ferredoxin [Neisseria gonorrhoeae SK-93-1035] gi|291013283|gb|EFE05249.1| conserved hypothetical protein [Neisseria gonorrhoeae DGI2] Length = 279 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CPA AI + + + +C CGLC CPVD I Sbjct: 75 DETACIGCTACIRACPADAIMGAGK----------LMHTVITDECTGCGLCVAPCPVDCI 124 Query: 119 VEGP 122 P Sbjct: 125 HMQP 128 Score = 35.1 bits (79), Expect = 3.5, Method: Composition-based stats. Identities = 12/23 (52%), Positives = 13/23 (56%) Query: 97 DIDMIKCIYCGLCQEACPVDAIV 119 ID CI C C ACP DAI+ Sbjct: 73 RIDETACIGCTACIRACPADAIM 95 >gi|154686862|ref|YP_001422023.1| YrhE [Bacillus amyloliquefaciens FZB42] gi|154352713|gb|ABS74792.1| YrhE [Bacillus amyloliquefaciens FZB42] Length = 995 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 4/91 (4%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+ S + + Y +CIAC C +C + R Sbjct: 139 HQKYPYTPKDDSKCAV-DMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWERDRPR 197 Query: 93 TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120 + + I+ C+ CG C CP +A++E Sbjct: 198 VIWDEGVAINESSCVSCGQCVTVCPCNALME 228 >gi|296330667|ref|ZP_06873144.1| iron-sulfur binding domain-containing protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305673923|ref|YP_003865595.1| iron-sulfur binding domain-containing protein [Bacillus subtilis subsp. spizizenii str. W23] gi|296152131|gb|EFG93003.1| iron-sulfur binding domain-containing protein [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305412167|gb|ADM37286.1| iron-sulfur binding domain-containing protein [Bacillus subtilis subsp. spizizenii str. W23] Length = 985 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 9/101 (8%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 ++ + PF++ + + + Y ++CI C C C +T Sbjct: 114 TVKEM--KINHQSIPFDQKP----YHKDESHPFYRYDPDQCILCGRCVEACQDVQVTETL 167 Query: 83 GPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPVDAIVE 120 R + + I+ C+ CG C CP +A++E Sbjct: 168 TIDWERKRPRVIWDNDVPINESSCVSCGHCSTVCPCNAMME 208 Score = 40.9 bits (94), Expect = 0.060, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 21/66 (31%), Gaps = 9/66 (13%) Query: 57 PNGEERCIAC----KLCEAICPA-----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 N E C C CE +I + + Y D +CI CG Sbjct: 93 YNHELYCTVCDYNNGGCEIHNTVKEMKINHQSIPFDQKPYHKDESHPFYRYDPDQCILCG 152 Query: 108 LCQEAC 113 C EAC Sbjct: 153 RCVEAC 158 >gi|323526708|ref|YP_004228861.1| dihydroorotate dehydrogenase family protein [Burkholderia sp. CCGE1001] gi|323383710|gb|ADX55801.1| dihydroorotate dehydrogenase family protein [Burkholderia sp. CCGE1001] Length = 442 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 8/75 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117 +++CI C LC C A + +++ +C+ C LC CPV Sbjct: 341 DQDKCIQCGLCHIACEDTAHQAIMKEKDGV-----RHFEVVDSECVGCNLCMHVCPVEQC 395 Query: 118 IVE--GPNFEFATET 130 I N E+A T Sbjct: 396 ITMERVDNGEYANWT 410 >gi|209550605|ref|YP_002282522.1| dihydropyrimidine dehydrogenase [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536361|gb|ACI56296.1| dihydroorotate dehydrogenase family protein [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 437 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 6/78 (7%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI C C C + ++ +G R +++ +C+ Sbjct: 330 QYLNLNYIAKAKIDQDACIKCGRCHIACED--TSHQAITNVVNGLR---HFEVIEEECVG 384 Query: 106 CGLCQEACPV-DAIVEGP 122 C LC CPV + I P Sbjct: 385 CNLCVNVCPVENCITMEP 402 >gi|302035986|ref|YP_003796308.1| NADH-quinone oxidoreductase subunit G [Candidatus Nitrospira defluvii] gi|300604050|emb|CBK40382.1| NADH-quinone oxidoreductase, subunit G [Candidatus Nitrospira defluvii] Length = 889 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 28/108 (25%), Gaps = 7/108 (6%) Query: 31 KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT 90 TT + K + RC+ C C C P Sbjct: 125 PTTSRFTETKRIFQKEYFSPLI----ETQMNRCVQCLRCVRYCDEIMDVKALAPVGRGTM 180 Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIV---EGPNFEFATETRQELY 135 + + C +CG C + CPV AI + R + Sbjct: 181 TEIKHFGPHELDCEFCGGCIQICPVGAITSRLSMYEYRPWMLKRADTI 228 >gi|239787665|emb|CAX84132.1| Pyridine nucleotide-disulphide oxidoreductase family protein [uncultured bacterium] Length = 544 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 23/67 (34%), Gaps = 5/67 (7%) Query: 58 NGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 RC++C C A + + G +YD C CGLC CP Sbjct: 480 YEARRCMSCGNCFECDNCYGACPDNAIIKVGPGQGFEFKYDY----CKGCGLCVTECPCG 535 Query: 117 AIVEGPN 123 AI P Sbjct: 536 AIDMVPE 542 >gi|255659850|ref|ZP_05405259.1| pyridine nucleotide-disulfide oxidoreductase [Mitsuokella multacida DSM 20544] gi|260847927|gb|EEX67934.1| pyridine nucleotide-disulfide oxidoreductase [Mitsuokella multacida DSM 20544] Length = 778 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 26/74 (35%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 L + +RC++C C E + T+ Y D +CI CG+C Sbjct: 694 ELGDPVSDYKRCVSCGTCRDCKMCLESCPEKAINRIEHEDGTIEYTSDPNRCIGCGICAG 753 Query: 112 ACPVDAIVEGPNFE 125 CP N E Sbjct: 754 VCPCGVWTIQDNPE 767 >gi|167770334|ref|ZP_02442387.1| hypothetical protein ANACOL_01677 [Anaerotruncus colihominis DSM 17241] gi|167667656|gb|EDS11786.1| hypothetical protein ANACOL_01677 [Anaerotruncus colihominis DSM 17241] Length = 513 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 6/66 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQEA 112 +E+CI C C +CP AI P R ID KC+ CG+C Sbjct: 157 DQEKCIKCGRCAEVCPYGAILKLERPCASACGMDAISSDEHGRAVIDYDKCVSCGMCIVN 216 Query: 113 CPVDAI 118 CP AI Sbjct: 217 CPFGAI 222 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 13/58 (22%) Query: 63 CIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C C+ +CP A++I G ID KCI CG C E CP AI Sbjct: 130 CQGCLAHPCKEVCPRDAVSIVHGKSV-----------IDQEKCIKCGRCAEVCPYGAI 176 >gi|88799940|ref|ZP_01115512.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Reinekea sp. MED297] gi|88777371|gb|EAR08574.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Reinekea sp. MED297] Length = 196 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 30/95 (31%), Gaps = 10/95 (10%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E E + E+ CI C C CP AI + + + Sbjct: 88 EPKPLDAEHGEEKTPQVAIIREDECIGCTKCIQACPVDAILGAAKQ----------MHTV 137 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 +C C LC E CPVD I P + Q Sbjct: 138 IESECTGCDLCVEPCPVDCIDMVPIEDTLATWHQN 172 >gi|188590495|ref|YP_001921441.1| dihydropyrimidine dehydrogenase [Clostridium botulinum E3 str. Alaska E43] gi|188500776|gb|ACD53912.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum E3 str. Alaska E43] Length = 412 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 7/94 (7%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 K + EE+C+ C C C A + +++ Sbjct: 322 KNIIPAEDLDREYIVYPEVNEEKCLGCGRCYISCYDGAHQAIK------WNSEERKPEVN 375 Query: 100 MIKCIYCGLCQEACPVDAIVEGPN-FEFATETRQ 132 +C+ C LC CPV AI +G F+ + R+ Sbjct: 376 KDRCVGCHLCALVCPVTAIGKGEIKFKNNGKERE 409 >gi|119897730|ref|YP_932943.1| electron transport complex protein RnfC [Azoarcus sp. BH72] gi|119670143|emb|CAL94056.1| putative electronen transport complex protein RnfC [Azoarcus sp. BH72] Length = 552 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 36/104 (34%), Gaps = 8/104 (7%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 AL P E+ CI C C CPA+ E + + CI CG C Sbjct: 352 PALFPPPPPEQPCIRCGECARACPAELQPFELY-WFGRARNFGKAQEYHLFDCIECGCCA 410 Query: 111 EACPVDAIVEGPNFEFAT---ETRQELYYDKERLLNNGDRWESE 151 CP I F F+ R+ DK+ +R+E Sbjct: 411 YVCPAH-IPLVDYFRFSKGEIWARER---DKDAADAARERFEFR 450 >gi|126698471|ref|YP_001087368.1| iron-dependent hydrogenase [Clostridium difficile 630] gi|255100006|ref|ZP_05328983.1| iron-dependent hydrogenase [Clostridium difficile QCD-63q42] gi|255305893|ref|ZP_05350065.1| iron-dependent hydrogenase [Clostridium difficile ATCC 43255] gi|115249908|emb|CAJ67727.1| putative iron-dependent hydrogenase [Clostridium difficile] Length = 498 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 7/69 (10%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIKCIYCGLC 109 + C AC +C++ C AI+ P R T++ I CI CG C Sbjct: 138 YINHDLCKACGMCKSSCQYDAISEVVRPCKSVCPTGALDFNRNTMKAMIHEDNCINCGAC 197 Query: 110 QEACPVDAI 118 ACP AI Sbjct: 198 MSACPFGAI 206 >gi|110634405|ref|YP_674613.1| dihydropyrimidine dehydrogenase [Mesorhizobium sp. BNC1] gi|110285389|gb|ABG63448.1| dihydrouracil dehydrogenase (NAD+) / dihydropyrimidine dehydrogenase (NADP+) [Chelativorans sp. BNC1] Length = 437 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 33/78 (42%), Gaps = 6/78 (7%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI C C C + ++ +G R +++ +C+ Sbjct: 330 QYLNLNYITKARIDQDLCIKCGRCHIACED--TSHQAITSVVNGVRY---FEVKEEECVG 384 Query: 106 CGLCQEACPV-DAIVEGP 122 C LC CPV + I P Sbjct: 385 CNLCVNVCPVENCITMVP 402 >gi|293568092|ref|ZP_06679429.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecium E1071] gi|291589174|gb|EFF20985.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecium E1071] Length = 1230 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 20/93 (21%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTV 94 AL +RC C C +CP AI I R DG + Sbjct: 680 VALEVPQWISDRCTMCNECAFVCPHAAIRPFLADEEEMEEAPEGFIVREMRGADGVKY-- 737 Query: 95 RYDIDMIKCIYCGLCQEACP--VDAIVEGPNFE 125 R + + C CGLC EACP A+V P E Sbjct: 738 RIQVSVEDCTGCGLCVEACPAKEKALVMKPYEE 770 >gi|302557265|ref|ZP_07309607.1| respiratory chain oxidoreductase [Streptomyces griseoflavus Tu4000] gi|302474883|gb|EFL37976.1| respiratory chain oxidoreductase [Streptomyces griseoflavus Tu4000] Length = 286 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 26/75 (34%), Gaps = 4/75 (5%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM----IKCIYCGLCQE 111 Y +CI C C C Q + G + + D C+YCG C E Sbjct: 145 YVRDYGKCILCYKCVDACGDQWQNTFAISVAGHGFDARIAVEHDAPLTDSACVYCGNCIE 204 Query: 112 ACPVDAIVEGPNFEF 126 CP A+ F+ Sbjct: 205 VCPTGALSFKSEFDM 219 >gi|251780330|ref|ZP_04823250.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084645|gb|EES50535.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 626 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 39/98 (39%), Gaps = 15/98 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 L+Y F+ + + +K +L Y +++C C C +CPA AIT E Sbjct: 543 TLKY-FREEYIAHVVDKKCPGGVC----KSLMSYEIDKDKCKGCSKCARMCPAGAITGEI 597 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 Y ID KCI CG C + C AI Sbjct: 598 KKP----------YTIDQSKCIKCGACMDGCAFKAIQL 625 >gi|254974515|ref|ZP_05270987.1| iron-dependent hydrogenase [Clostridium difficile QCD-66c26] gi|255091906|ref|ZP_05321384.1| iron-dependent hydrogenase [Clostridium difficile CIP 107932] gi|255100005|ref|ZP_05328982.1| iron-dependent hydrogenase [Clostridium difficile QCD-63q42] gi|255305892|ref|ZP_05350064.1| iron-dependent hydrogenase [Clostridium difficile ATCC 43255] gi|255313640|ref|ZP_05355223.1| iron-dependent hydrogenase [Clostridium difficile QCD-76w55] gi|255516324|ref|ZP_05384000.1| iron-dependent hydrogenase [Clostridium difficile QCD-97b34] gi|255649423|ref|ZP_05396325.1| iron-dependent hydrogenase [Clostridium difficile QCD-37x79] gi|306519504|ref|ZP_07405851.1| iron-dependent hydrogenase [Clostridium difficile QCD-32g58] gi|328887576|emb|CAJ67726.2| putative iron-dependent hydrogenase [Clostridium difficile] Length = 496 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 7/71 (9%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT-------RRTVRYDIDMIKCIYCG 107 E C AC +C+ C AI+ P R ++ I KC+ CG Sbjct: 134 MAYINHELCKACGMCKKACQYDAISEVVRPCKSVCPTNALGFDRENMKAMIHEDKCLNCG 193 Query: 108 LCQEACPVDAI 118 C ACP AI Sbjct: 194 ACMSACPFGAI 204 >gi|77918639|ref|YP_356454.1| NifJ-like oxidoreductase, Fe-S subunit [Pelobacter carbinolicus DSM 2380] gi|77544722|gb|ABA88284.1| NifJ-like oxidoreductase, Fe-S subunit [Pelobacter carbinolicus DSM 2380] Length = 1180 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 32/92 (34%), Gaps = 16/92 (17%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------QAITIESGP------- 84 +TS + AL E C+ C LC +CP A +E P Sbjct: 668 PTATSRYEKRNIALEIPVWDEHLCVQCGLCSFVCPHATLRMKIYDASYLEQAPQTFRTVD 727 Query: 85 -RCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 R + + C+ CG+C E CPV Sbjct: 728 ARGAEFEGNKFTLQVAPEDCVGCGICVEVCPV 759 >gi|254491903|ref|ZP_05105082.1| electron transport complex, RnfABCDGE type, C subunit subfamily [Methylophaga thiooxidans DMS010] gi|224463381|gb|EEF79651.1| electron transport complex, RnfABCDGE type, C subunit subfamily [Methylophaga thiooxydans DMS010] Length = 508 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 33/156 (21%), Positives = 45/156 (28%), Gaps = 25/156 (16%) Query: 20 FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEH--------------ALRRYPN-----GE 60 F + T P E G + L + Sbjct: 311 FGTPISELLAFAETKRQPDEPFILGGPMMGFNLSGDNLPVTKTANCILVGVDDAAPASEP 370 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 CI C C CPA + + R D ++ CI CG C CP I Sbjct: 371 LPCIRCGDCATACPASLLPQQLYWHSRAKDFDQTR-DYNLFDCIECGCCDYVCP-SKIPL 428 Query: 121 GPNFEFATETR--QELYYDKERLLNNGDRWESEIVR 154 F FA QE + K L +R+E+ + R Sbjct: 429 VSYFRFAKTEIMNQEREHQKSDLAR--ERFETRLAR 462 >gi|209885821|ref|YP_002289678.1| formate dehydrogenase, alpha subunit [Oligotropha carboxidovorans OM5] gi|209874017|gb|ACI93813.1| formate dehydrogenase, alpha subunit [Oligotropha carboxidovorans OM5] Length = 923 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 35/85 (41%), Gaps = 3/85 (3%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRY 96 + + R+ G+++ + CI C LC C Q + + G + + Sbjct: 122 ESRFPKAERWTGDYSHPAMSVNLDACIQCGLCVRACREVQVNDVIGMAYRNHGAKVVFDF 181 Query: 97 D--IDMIKCIYCGLCQEACPVDAIV 119 D + C+ CG C +ACP A++ Sbjct: 182 DDPMGESTCVACGECVQACPTGALM 206 >gi|317153236|ref|YP_004121284.1| glutamate synthase (NADPH) [Desulfovibrio aespoeensis Aspo-2] gi|316943487|gb|ADU62538.1| Glutamate synthase (NADPH) [Desulfovibrio aespoeensis Aspo-2] Length = 508 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 23/68 (33%), Gaps = 9/68 (13%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + CI CK+C C QA + + D KCI C C+ CP Sbjct: 14 CIDRDPDLCINCKVCVRQCSYQAHYFDEARQKVM---------HDNTKCIGCHRCEALCP 64 Query: 115 VDAIVEGP 122 A+ Sbjct: 65 TAALNIRN 72 >gi|220929712|ref|YP_002506621.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Clostridium cellulolyticum H10] gi|220000040|gb|ACL76641.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Clostridium cellulolyticum H10] Length = 623 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 10/68 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L +E+C C C ICP QAI + Y ++ KCI CG C E Sbjct: 565 LASIVIEKEKCKGCSKCARICPVQAIEG----------KIKEPYTVNQSKCIKCGACLEV 614 Query: 113 CPVDAIVE 120 CP AI E Sbjct: 615 CPFAAIKE 622 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 13/40 (32%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + + I+ KC C C CPV AI Sbjct: 551 HVVDKKCKTHTCKSLASIVIEKEKCKGCSKCARICPVQAI 590 >gi|15679548|ref|NP_276665.1| formate dehydrogenase, alpha subunit-like protein [Methanothermobacter thermautotrophicus str. Delta H] gi|2622673|gb|AAB86026.1| formate dehydrogenase, alpha subunit homolog [Methanothermobacter thermautotrophicus str. Delta H] Length = 865 Score = 51.3 bits (121), Expect = 4e-05, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 2/66 (3%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQEA 112 + ++CI C LC +C A TR + D I C+ CG C E Sbjct: 124 FFIRNHDKCILCGLCVRVCRATGAEAIDFAYRGHDTRISTFMDRAITESSCVSCGECVEV 183 Query: 113 CPVDAI 118 CPV A+ Sbjct: 184 CPVGAL 189 >gi|327191027|gb|EGE58081.1| NADH-ubiquinone oxidoreductase protein, chain G [Rhizobium etli CNPAF512] Length = 859 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 3/82 (3%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 ++ S R + N RCI C+ C +C + G ++ Sbjct: 126 DKRVFHSEDIRLSPVIIMNVN---RCIQCQRCVRMCEEVVGAVALGTVEKGMDTAVTGFE 182 Query: 98 IDMIKCIYCGLCQEACPVDAIV 119 + C CG C E CPV A++ Sbjct: 183 GSLAGCDQCGNCVEVCPVGALM 204 >gi|308174421|ref|YP_003921126.1| oxido-reductase [Bacillus amyloliquefaciens DSM 7] gi|307607285|emb|CBI43656.1| putative oxido-reductase [Bacillus amyloliquefaciens DSM 7] Length = 995 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 4/91 (4%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+ S + + Y +CIAC C +C + R Sbjct: 139 HQKYPYTPKDDSKCAV-DMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWERDRPR 197 Query: 93 TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120 + + I+ C+ CG C CP +A++E Sbjct: 198 VIWDEGVAINESSCVSCGQCVTVCPCNALME 228 >gi|70606159|ref|YP_255029.1| formate dehydrogenase alpha chain [Sulfolobus acidocaldarius DSM 639] gi|68566807|gb|AAY79736.1| formate dehydrogenase alpha chain [Sulfolobus acidocaldarius DSM 639] Length = 976 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQE 111 Y +CI C C C A+ + R V + I C+ CG C Sbjct: 137 FYTYDPSQCILCGRCVEACQDFAVNEVIWIDWNLNPPRVVWDNGNPIGNSSCVNCGTCVT 196 Query: 112 ACPVDAIVE 120 CPV+A++E Sbjct: 197 VCPVNALME 205 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 26/86 (30%), Gaps = 7/86 (8%) Query: 42 STSPRFRGEHALRRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRRTVR-- 95 + R R + C C CE + I S G Sbjct: 77 PRALNARKTAVSRILRYHKLYCTICENNNGDCELHEAVIKLNINSQKYVDKGYALDDTGP 136 Query: 96 -YDIDMIKCIYCGLCQEACPVDAIVE 120 Y D +CI CG C EAC A+ E Sbjct: 137 FYTYDPSQCILCGRCVEACQDFAVNE 162 >gi|325129008|gb|EGC51858.1| iron-sulfur cluster-binding protein [Neisseria meningitidis N1568] Length = 279 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CPA AI + + + +C CGLC CPVD I Sbjct: 75 DETACIGCTACIRACPADAIMGAGK----------LMHTVIADECTGCGLCVAPCPVDCI 124 Query: 119 VEGP 122 P Sbjct: 125 HMQP 128 Score = 35.1 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 12/23 (52%), Positives = 13/23 (56%) Query: 97 DIDMIKCIYCGLCQEACPVDAIV 119 ID CI C C ACP DAI+ Sbjct: 73 RIDETACIGCTACIRACPADAIM 95 >gi|323141630|ref|ZP_08076512.1| protein HymB [Phascolarctobacterium sp. YIT 12067] gi|322413895|gb|EFY04732.1| protein HymB [Phascolarctobacterium sp. YIT 12067] Length = 596 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 16/96 (16%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 L+Y F+ + + ++ G + + C C LC CP QAI+ Sbjct: 514 TLKY-FRDEYEAHIKEKRCPA-----GVCEKMLHYEISDVCRGCGLCARQCPVQAISGSP 567 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ ID KCI CG C ACP AI Sbjct: 568 K----------TKHVIDQNKCIKCGACMTACPFKAI 593 Score = 38.2 bits (87), Expect = 0.43, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 16/43 (37%) Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 RC G + + C CGLC CPV AI P Sbjct: 525 HIKEKRCPAGVCEKMLHYEISDVCRGCGLCARQCPVQAISGSP 567 >gi|297526529|ref|YP_003668553.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Staphylothermus hellenicus DSM 12710] gi|297255445|gb|ADI31654.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Staphylothermus hellenicus DSM 12710] Length = 640 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 9/73 (12%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 L Y +++C C +C + AI + G + I C CG Sbjct: 564 HKGIKLPVYTILQDKCTGCMVCVNLLGCPAIVVPKGSKKP---------VILPELCAGCG 614 Query: 108 LCQEACPVDAIVE 120 LC + CP +AIV Sbjct: 615 LCAQVCPFNAIVL 627 >gi|157779399|gb|ABV71243.1| NADPH-dependent sulfur oxidoreductase B subunit [Thermococcus litoralis DSM 5473] Length = 555 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 14/104 (13%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 L +F+ + + ++ L +Y ++C C C CP +AI+ E Sbjct: 464 LTTLQYFRDEYIAHVKDKRCPAKVCKP----LIKYVIIADKCTGCTACAIFCPVKAISGE 519 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 + + ID CI CG C C DAI +E Sbjct: 520 ----------KLKPHVIDQEACIKCGTCYNVCRFDAIKIVDAYE 553 >gi|15966201|ref|NP_386554.1| dihydropyrimidine dehydrogenase [Sinorhizobium meliloti 1021] gi|307308552|ref|ZP_07588254.1| dihydroorotate dehydrogenase family protein [Sinorhizobium meliloti BL225C] gi|307317330|ref|ZP_07596770.1| dihydroorotate dehydrogenase family protein [Sinorhizobium meliloti AK83] gi|15075471|emb|CAC47027.1| Dihydropyrimidine dehydrogenase [Sinorhizobium meliloti 1021] gi|306896919|gb|EFN27665.1| dihydroorotate dehydrogenase family protein [Sinorhizobium meliloti AK83] gi|306900952|gb|EFN31561.1| dihydroorotate dehydrogenase family protein [Sinorhizobium meliloti BL225C] Length = 437 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 6/78 (7%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI C C A S +++ +C+ Sbjct: 330 QYLNLNYIAKAKIDQDACIKCGRCHI-----ACEDTSHQAITQFVNGVRHFEVIEEECVG 384 Query: 106 CGLCQEACPV-DAIVEGP 122 C LC CPV + I P Sbjct: 385 CNLCVNVCPVENCITMEP 402 >gi|107023264|ref|YP_621591.1| ferredoxin [Burkholderia cenocepacia AU 1054] gi|116690347|ref|YP_835970.1| ferredoxin [Burkholderia cenocepacia HI2424] gi|105893453|gb|ABF76618.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia cenocepacia AU 1054] gi|116648436|gb|ABK09077.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia cenocepacia HI2424] Length = 342 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 22/66 (33%), Gaps = 10/66 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C LC CP AI + I C C LC CPVD Sbjct: 118 FIDENLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVASLCTGCDLCIPPCPVD 167 Query: 117 AIVEGP 122 I P Sbjct: 168 CIAMLP 173 >gi|303232658|ref|ZP_07319343.1| pyruvate synthase [Atopobium vaginae PB189-T1-4] gi|302481144|gb|EFL44219.1| pyruvate synthase [Atopobium vaginae PB189-T1-4] Length = 1179 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 27/130 (20%), Positives = 45/130 (34%), Gaps = 24/130 (18%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-----QAITIESGPRCHDGTRR 92 +E G+ + RG + + +CI C C +CP A+T E + Sbjct: 673 YELGTAAYEKRGVAVMVPRWDE-TKCIQCNNCSFVCPHATIRPFAMTPEEAAAAPSNMKM 731 Query: 93 T---------VRYDID--MIKCIYCGLCQEACPVDAIVEGP-NFEFATETR------QEL 134 +++ I + C+ C C CP D + P E + ++ Sbjct: 732 IDAVGKGAQGMKFSIVVSPLDCMGCTNCLYVCPKDCLTMVPTEEELPMQKVWDWAVDEDN 791 Query: 135 YYDKERLLNN 144 KE L NN Sbjct: 792 VSTKEELANN 801 >gi|294782748|ref|ZP_06748074.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Fusobacterium sp. 1_1_41FAA] gi|294481389|gb|EFG29164.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Fusobacterium sp. 1_1_41FAA] Length = 1189 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 28/124 (22%), Positives = 43/124 (34%), Gaps = 25/124 (20%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-------------QAITIESGP 84 FE G+++ RG N ++CI C C +CP +A IE Sbjct: 676 FENGTSAFEKRGVAVDVPIWN-IDKCIQCNQCSYVCPHAVIRPFLINEEELKASPIELAT 734 Query: 85 RCHDGTRRT---VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERL 141 + G R + + C+ CG C CP A+ P + DKE + Sbjct: 735 KKPTGKGLDGLGYRIQVSTLDCVGCGSCAHVCPAKALDMMPI--------ADSLNDKEDI 786 Query: 142 LNNG 145 + Sbjct: 787 KADY 790 >gi|160941320|ref|ZP_02088657.1| hypothetical protein CLOBOL_06213 [Clostridium bolteae ATCC BAA-613] gi|158435881|gb|EDP13648.1| hypothetical protein CLOBOL_06213 [Clostridium bolteae ATCC BAA-613] Length = 296 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 24/139 (17%), Positives = 48/139 (34%), Gaps = 18/139 (12%) Query: 24 LRYFFKAKT-TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 L +F+ ++P+ + + + C C C + C A + + Sbjct: 5 LDSWFQEPVLQCHFPWVIIFSMSDKESKEEIHMVEINRNACTGCGQCMSDCIANNLFLRE 64 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT---ETRQELYYDKE 139 G G CI CG C CP++A+ P ++ ++++ D + Sbjct: 65 GKAEVSGN------------CILCGHCVAVCPLNAVSI-PEYDMGDVEELSQEQAGLDSD 111 Query: 140 RLLNNGDRWESEIVRNIVT 158 RLL ++ + R Sbjct: 112 RLLK-AIKYRRSVRRFKQK 129 >gi|153833749|ref|ZP_01986416.1| formate dehydrogenase, alpha subunit [Vibrio harveyi HY01] gi|148869921|gb|EDL68884.1| formate dehydrogenase, alpha subunit [Vibrio harveyi HY01] Length = 1412 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 14/79 (17%) Query: 59 GEERCIACKLCEAICPAQAITIE--------------SGPRCHDGTRRTVRYDIDMIKCI 104 RCI+C C C +A+ R H G+ + + C+ Sbjct: 631 DANRCISCGQCIQACRDKAVHGVLNFVCDKQGRPALRPDDRPHFGSNKNGLTLMGDSNCV 690 Query: 105 YCGLCQEACPVDAIVEGPN 123 CG C + CP A+V+ + Sbjct: 691 QCGACVQVCPTGAMVDSRD 709 >gi|119896806|ref|YP_932019.1| electron transport complex protein RnfC [Azoarcus sp. BH72] gi|119669219|emb|CAL93132.1| probable electronen transport complex protein RnfC [Azoarcus sp. BH72] Length = 519 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 28/78 (35%), Gaps = 7/78 (8%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 CI C C CP + ++ G DI + CI CG C CP I Sbjct: 382 PCIRCASCVGACPIGLMPLDMAALIKHGDLAASV-DIGLKDCIGCGTCSYVCP-SKIPLV 439 Query: 122 PNF-----EFATETRQEL 134 F E A + R ++ Sbjct: 440 HYFNHAKGELAAQDRNKM 457 >gi|15676135|ref|NP_273266.1| ferredoxin, 4Fe-4S type [Neisseria meningitidis MC58] gi|7225430|gb|AAF40665.1| ferredoxin, 4Fe-4S bacterial type [Neisseria meningitidis MC58] gi|316985127|gb|EFV64079.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria meningitidis H44/76] gi|325199417|gb|ADY94872.1| iron-sulfur cluster-binding protein [Neisseria meningitidis H44/76] Length = 279 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CPA AI + + + +C CGLC CPVD I Sbjct: 75 DETACIGCTACIRACPADAIMGAGK----------LMHTVIADECTGCGLCVAPCPVDCI 124 Query: 119 VEGP 122 P Sbjct: 125 HMQP 128 Score = 35.1 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 12/23 (52%), Positives = 13/23 (56%) Query: 97 DIDMIKCIYCGLCQEACPVDAIV 119 ID CI C C ACP DAI+ Sbjct: 73 RIDETACIGCTACIRACPADAIM 95 >gi|116749408|ref|YP_846095.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116698472|gb|ABK17660.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Syntrophobacter fumaroxidans MPOB] Length = 1021 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 6/64 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E CI C LCEA+CP AI R H + R + C CG+C +CP AI Sbjct: 947 DQEACIGCGLCEALCPFGAI------RLHKVIGKGFRAETISASCKGCGVCSASCPQKAI 1000 Query: 119 VEGP 122 Sbjct: 1001 DMKH 1004 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 27/80 (33%), Gaps = 12/80 (15%) Query: 54 RRYPNGEERCIACKLCEAICPAQAIT-------IESGPRCHDGTRRTVRYDIDMIKCIY- 105 + +CIAC +C CP + ++Y ID CIY Sbjct: 105 QPRYVDSSKCIACGVCAEKCPKKVDDLFNEGLGKRKAAYVKYPQAVPLKYVIDEDNCIYF 164 Query: 106 ----CGLCQEACPVDAIVEG 121 C C++ CP A+ Sbjct: 165 KSGKCRACEKFCPAGAVDFS 184 >gi|317126172|ref|YP_004100284.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Intrasporangium calvum DSM 43043] gi|315590260|gb|ADU49557.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Intrasporangium calvum DSM 43043] Length = 586 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 9/62 (14%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C C CP AI + RY+ + KC CG C CPV AI Sbjct: 492 NCFECDGCFGSCPEDAI---------IKLGKGKRYEFNYAKCTGCGTCYRQCPVHAIEMV 542 Query: 122 PN 123 Sbjct: 543 SE 544 >gi|311067708|ref|YP_003972631.1| iron-sulfur binding domain-containing protein [Bacillus atrophaeus 1942] gi|310868225|gb|ADP31700.1| iron-sulfur binding domain-containing protein [Bacillus atrophaeus 1942] Length = 984 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 9/101 (8%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 ++ + PF++ + + + Y ++CI C C C +T Sbjct: 113 TVKEM--KINHQSIPFDQKP----YHKDESHPFYRYDPDQCILCGRCVEACQDVQVTETL 166 Query: 83 GPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPVDAIVE 120 R + + I+ C+ CG C CP +A++E Sbjct: 167 TIDWERKRPRVIWDNDVPINESSCVSCGHCSTVCPCNAMME 207 Score = 40.9 bits (94), Expect = 0.062, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 21/66 (31%), Gaps = 9/66 (13%) Query: 57 PNGEERCIAC----KLCEAICPA-----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 N E C C CE +I + + Y D +CI CG Sbjct: 92 YNHELYCTVCDYNNGGCEIHNTVKEMKINHQSIPFDQKPYHKDESHPFYRYDPDQCILCG 151 Query: 108 LCQEAC 113 C EAC Sbjct: 152 RCVEAC 157 >gi|302388830|ref|YP_003824651.1| NADH dehydrogenase (quinone) [Thermosediminibacter oceani DSM 16646] gi|302199458|gb|ADL07028.1| NADH dehydrogenase (quinone) [Thermosediminibacter oceani DSM 16646] Length = 583 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 37/98 (37%), Gaps = 15/98 (15%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 LRY F+ + + +K AL Y E+C +C LC CP AI Sbjct: 499 TTLRY-FRDEYEAHIKDKKCPAKQC----KALIAYRIDAEKCKSCGLCARKCPVNAIKGS 553 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 G Y+I + KC CG C + C A+ Sbjct: 554 KGQP----------YEIVLEKCTKCGTCMQVCRFGAVF 581 Score = 40.9 bits (94), Expect = 0.060, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 19/44 (43%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 I+ + + Y ID KC CGLC CPV+AI Sbjct: 511 HIKDKKCPAKQCKALIAYRIDAEKCKSCGLCARKCPVNAIKGSK 554 >gi|297584190|ref|YP_003699970.1| pyruvate/ketoisovalerate oxidoreductase subunit gamma [Bacillus selenitireducens MLS10] gi|297142647|gb|ADH99404.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit [Bacillus selenitireducens MLS10] Length = 337 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C+ +CP E G G + ID C C C +ACP DA+ Sbjct: 254 ESCIHCAACDTVCPDYCFVWEQGEDKK-GRPQMFLKGIDYQYCKGCLKCVDACPTDAL 310 >gi|126667558|ref|ZP_01738528.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Marinobacter sp. ELB17] gi|126627984|gb|EAZ98611.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Marinobacter sp. ELB17] Length = 211 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 28/82 (34%), Gaps = 10/82 (12%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E A R E+ CI C C CP AI G + + I Sbjct: 92 EPQPLDAEHGAAQAKRVAVIREDECIGCTKCIQACPVDAI---------LGAAKHMHTVI 142 Query: 99 DMIKCIYCGLCQEACPVDAIVE 120 +C C LC E CPVD I Sbjct: 143 -ESECTGCDLCVEPCPVDCIDM 163 >gi|134299648|ref|YP_001113144.1| hydrogenase large subunit [Desulfotomaculum reducens MI-1] gi|134052348|gb|ABO50319.1| hydrogenase large subunit domain protein [Desulfotomaculum reducens MI-1] Length = 462 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110 + C+ C C CP AI + P + ++ D ID C CGLC Sbjct: 124 FIDQNSCVECGKCANACPYNAIIEVTRPCERACALKAIKVDDSRKAVIDHELCASCGLCV 183 Query: 111 EACPVDAI 118 CP AI Sbjct: 184 TVCPFGAI 191 Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 5/63 (7%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTV-----RYDIDMIKCIYCGLCQEACPVDA 117 C C L + + + P + ++ + R ID C+ CG C ACP +A Sbjct: 85 CNGCSLNKYVVTDACQNCVAHPCRNSCPKKAISVIQNRAFIDQNSCVECGKCANACPYNA 144 Query: 118 IVE 120 I+E Sbjct: 145 IIE 147 >gi|304408661|ref|ZP_07390282.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella baltica OS183] gi|307305490|ref|ZP_07585238.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella baltica BA175] gi|304352482|gb|EFM16879.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella baltica OS183] gi|306911793|gb|EFN42218.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella baltica BA175] Length = 882 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 11/109 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114 E+ CI C C CPA P+ + YD ++ CI CG C CP Sbjct: 375 EEKACIRCGECATACPA-----LLLPQQLFWHAKAEEYDKAASYNLKDCIECGCCSYVCP 429 Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 I + A ++ +K++ R+++ + R + + R Sbjct: 430 -SDIPLVEYYRIAKSALKQAADEKQQAERAKQRFDARLAR-LEEEKLAR 476 >gi|291522103|emb|CBK80396.1| electron transport complex, RnfABCDGE type, B subunit [Coprococcus catus GD/7] Length = 256 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 27/90 (30%), Gaps = 11/90 (12%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 PFEK + + CI C C C AI + + Sbjct: 178 KHVIALVPFEKKHHVLCVNTDKGAEAMKVCKTSCIGCMKCVKTCEHDAIHVTNFNAA--- 234 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 ID KC CG C E CP AI Sbjct: 235 --------IDYDKCTNCGACAEVCPKHAIC 256 Score = 37.4 bits (85), Expect = 0.76, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 5/69 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV-----RYDIDMIKCIYCGLCQEAC 113 +++C+ C +C CP I + + H + CI C C + C Sbjct: 162 DQDKCVGCGICVKTCPKHVIALVPFEKKHHVLCVNTDKGAEAMKVCKTSCIGCMKCVKTC 221 Query: 114 PVDAIVEGP 122 DAI Sbjct: 222 EHDAIHVTN 230 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 11/67 (16%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 C+ C A+CP +AI + G ID KC+ CG+C + CP Sbjct: 130 DSTCAYGCLGHGDCAAVCPEKAIIVHDGLAM-----------IDQDKCVGCGICVKTCPK 178 Query: 116 DAIVEGP 122 I P Sbjct: 179 HVIALVP 185 >gi|290956205|ref|YP_003487387.1| respiratory chain oxidoreductase [Streptomyces scabiei 87.22] gi|260645731|emb|CBG68822.1| putative respiratory chain oxidoreductase [Streptomyces scabiei 87.22] Length = 286 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 4/75 (5%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID----MIKCIYCGLCQE 111 Y ++CI C C C +Q + G + + D C+YCG C E Sbjct: 145 YVRDYDKCILCYKCVDACGSQWQNSFAISVVGRGFDARIAVEHDGPLTDSACVYCGNCVE 204 Query: 112 ACPVDAIVEGPNFEF 126 CP A+ F+ Sbjct: 205 VCPTGALSFKSEFDM 219 >gi|154483117|ref|ZP_02025565.1| hypothetical protein EUBVEN_00818 [Eubacterium ventriosum ATCC 27560] gi|149735925|gb|EDM51811.1| hypothetical protein EUBVEN_00818 [Eubacterium ventriosum ATCC 27560] Length = 504 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 6/66 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQEA 112 +++CI C C + CP A+ + P R DID +C+ CG+C + Sbjct: 146 DQDKCIKCGKCASACPYNAVVKQERPCAKACGMNAIKSDEYGRADIDYDQCVSCGMCLVS 205 Query: 113 CPVDAI 118 CP AI Sbjct: 206 CPFSAI 211 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 20/61 (32%), Gaps = 5/61 (8%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTR-----RTVRYDIDMIKCIYCGLCQEACPVDA 117 C AC P + R ID KCI CG C ACP +A Sbjct: 105 CHACPEKRVFITNACQGCLEHPCIEVCPKDAIKMVKGRSVIDQDKCIKCGKCASACPYNA 164 Query: 118 I 118 + Sbjct: 165 V 165 >gi|217973446|ref|YP_002358197.1| electron transport complex protein RnfC [Shewanella baltica OS223] gi|217498581|gb|ACK46774.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella baltica OS223] Length = 876 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 11/109 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114 E+ CI C C CPA P+ + YD ++ CI CG C CP Sbjct: 375 EEKACIRCGECATACPA-----LLLPQQLFWHAKAEEYDKAASYNLKDCIECGCCSYVCP 429 Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 I + A ++ +K++ R+++ + R + + R Sbjct: 430 -SDIPLVEYYRIAKSALKQAADEKQQAERAKQRFDARLAR-LEEEKLAR 476 >gi|160875223|ref|YP_001554539.1| electron transport complex protein RnfC [Shewanella baltica OS195] gi|160860745|gb|ABX49279.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella baltica OS195] gi|315267416|gb|ADT94269.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella baltica OS678] Length = 888 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 11/109 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114 E+ CI C C CPA P+ + YD ++ CI CG C CP Sbjct: 375 EEKACIRCGECATACPA-----LLLPQQLFWHAKAEEYDKAASYNLKDCIECGCCSYVCP 429 Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 I + A ++ +K++ R+++ + R + + R Sbjct: 430 -SDIPLVEYYRIAKSALKQAADEKQQAERAKQRFDARLAR-LEEEKLAR 476 >gi|78044500|ref|YP_359586.1| Fe-hydrogenase subunit beta [Carboxydothermus hydrogenoformans Z-2901] gi|77996615|gb|ABB15514.1| Fe-hydrogenase, beta subunit [Carboxydothermus hydrogenoformans Z-2901] Length = 592 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 32/99 (32%), Positives = 43/99 (43%), Gaps = 15/99 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 LRY F+ + + +K AL Y E++C+ C C +CP AI+ E Sbjct: 509 TLRY-FRHEYEAHIYDKKCPAGVC----AALLEYKILEDKCVGCGACARVCPVGAISGE- 562 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 R + ID KCI CG C E C AIV+G Sbjct: 563 ---------RKQPHQIDPEKCIKCGSCMEKCKFGAIVKG 592 >gi|126090184|ref|YP_001041665.1| electron transport complex protein RnfC [Shewanella baltica OS155] gi|126174477|ref|YP_001050626.1| electron transport complex protein RnfC [Shewanella baltica OS155] gi|125997682|gb|ABN61757.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella baltica OS155] gi|125999840|gb|ABN63910.1| hypothetical protein Sbal_4547 [Shewanella baltica OS155] Length = 884 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 41/109 (37%), Gaps = 11/109 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114 E+ CI C C CPA P+ + YD ++ CI CG C CP Sbjct: 375 EEKACIRCGECATACPA-----LLLPQQLFWHAKAEEYDKAASYNLKDCIECGCCSYVCP 429 Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 I + A ++ +K++ R+++ + R + + R Sbjct: 430 -SDIPLVEYYRIAKSALKQAADEKQQAERAKQRFDARLAR-LEEEKLAR 476 >gi|220909729|ref|YP_002485040.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [Cyanothece sp. PCC 7425] gi|219866340|gb|ACL46679.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Cyanothece sp. PCC 7425] Length = 1193 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 36/116 (31%), Gaps = 30/116 (25%) Query: 58 NGEERCIACKLCEAICPAQ--------------AITIESGPRCHDGTRRTVRYDID--MI 101 + C+ C C +CP A T D +++ I Sbjct: 683 WEPDLCVQCGKCVMVCPHAVIRSKVYTPDHLETAPTEFKSANARDHDWTDLKFTIQVAAE 742 Query: 102 KCIYCGLCQEACPVD--------AIVEGPNFEFATETRQ--ELYYDKERLLNNGDR 147 C CG+C + CP AI P + RQ + + D L N DR Sbjct: 743 DCTGCGICVDVCPARSKSEARLKAINMQPQLPLREQERQNWDFFLD----LPNPDR 794 >gi|16078281|ref|NP_389098.1| oxidoreductase [Bacillus subtilis subsp. subtilis str. 168] gi|221309064|ref|ZP_03590911.1| hypothetical protein Bsubs1_06726 [Bacillus subtilis subsp. subtilis str. 168] gi|221313391|ref|ZP_03595196.1| hypothetical protein BsubsN3_06662 [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318314|ref|ZP_03599608.1| hypothetical protein BsubsJ_06601 [Bacillus subtilis subsp. subtilis str. JH642] gi|221322587|ref|ZP_03603881.1| hypothetical protein BsubsS_06707 [Bacillus subtilis subsp. subtilis str. SMY] gi|81342378|sp|O34720|YJGC_BACSU RecName: Full=Probable oxidoreductase yjgC gi|2612888|gb|AAC46312.1| formate dehydrogenase alpha subunit homolog [Bacillus subtilis subsp. subtilis str. 168] gi|2633570|emb|CAB13073.1| putative oxidoreductase [Bacillus subtilis subsp. subtilis str. 168] Length = 985 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 9/101 (8%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 ++ + PF+ + + + Y ++CI C C C +T Sbjct: 114 TVKEM--KINHQSIPFDHKP----YHKDESHPFYRYDPDQCILCGRCVEACQDVQVTETL 167 Query: 83 GPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPVDAIVE 120 R + + I+ C+ CG C CP +A++E Sbjct: 168 TIDWERKRPRVIWDNDVPINESSCVSCGHCSTVCPCNAMME 208 Score = 40.5 bits (93), Expect = 0.074, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 21/66 (31%), Gaps = 9/66 (13%) Query: 57 PNGEERCIAC----KLCEAICPA-----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 N E C C CE +I + + Y D +CI CG Sbjct: 93 YNHELYCTVCDYNNGGCEIHNTVKEMKINHQSIPFDHKPYHKDESHPFYRYDPDQCILCG 152 Query: 108 LCQEAC 113 C EAC Sbjct: 153 RCVEAC 158 >gi|260893624|ref|YP_003239721.1| hydrogenase, Fe-only [Ammonifex degensii KC4] gi|260865765|gb|ACX52871.1| hydrogenase, Fe-only [Ammonifex degensii KC4] Length = 583 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 39/95 (41%), Gaps = 8/95 (8%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP----AQAITIESGPRCHD 88 T+ P P A+ R PN +CI C+ CE++C AI ++ Sbjct: 122 TVRIPALPRKELPLDTSTVAIIRDPN---KCIVCRRCESVCHNIQTVGAIALQGKGFAAT 178 Query: 89 GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 RY +D C+ CG C CPV AI E + Sbjct: 179 VAPVGGRY-LDETNCVQCGQCALVCPVGAIYERDD 212 >gi|254451106|ref|ZP_05064543.1| iron-sulfur cluster-binding protein [Octadecabacter antarcticus 238] gi|198265512|gb|EDY89782.1| iron-sulfur cluster-binding protein [Octadecabacter antarcticus 238] Length = 649 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 33/106 (31%), Gaps = 12/106 (11%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 R + P K P A+ + C C C ++CP+ A+ Sbjct: 464 TRRQVARLSAKALNPDAKLLPLPDNAPYGAVVVDTD---ACTLCLACVSLCPSGALGDNP 520 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 + C+ CGLC CP AI P F+ + Sbjct: 521 D---------LPQLRFQESACLQCGLCANICPEKAITLKPQFDLSD 557 Score = 38.5 bits (88), Expect = 0.31, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 18/53 (33%), Gaps = 11/53 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C +CP AI ID + C CG C CP AI Sbjct: 279 CSNCLNVCPTGAILSAGE-----------VVSIDPLICAGCGACSAVCPSGAI 320 >gi|188589360|ref|YP_001921432.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum E3 str. Alaska E43] gi|188499641|gb|ACD52777.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum E3 str. Alaska E43] Length = 626 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 10/68 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L Y +++C C C +CPA AIT E Y ID KCI CG C + Sbjct: 568 LMSYEIDKDKCKGCSKCARMCPAGAITGEIKKP----------YTIDQSKCIKCGACMDG 617 Query: 113 CPVDAIVE 120 C AI Sbjct: 618 CAFKAIQL 625 >gi|156977574|ref|YP_001448480.1| oxidoreductase [Vibrio harveyi ATCC BAA-1116] gi|156529168|gb|ABU74253.1| hypothetical protein VIBHAR_06362 [Vibrio harveyi ATCC BAA-1116] Length = 1412 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 14/79 (17%) Query: 59 GEERCIACKLCEAICPAQAITIE--------------SGPRCHDGTRRTVRYDIDMIKCI 104 RCI+C C C +A+ R H G+ + + C+ Sbjct: 631 DANRCISCGQCIQACRDKAVHGVLNFVCDKQGRPALRPDDRPHFGSNKNGLTLMGDSNCV 690 Query: 105 YCGLCQEACPVDAIVEGPN 123 CG C + CP A+V+ + Sbjct: 691 QCGACVQVCPTGAMVDSRD 709 >gi|157375410|ref|YP_001474010.1| putative pyruvate oxidoreductase [Shewanella sediminis HAW-EB3] gi|157317784|gb|ABV36882.1| putative pyruvate oxidoreductase [Shewanella sediminis HAW-EB3] Length = 1197 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 37/116 (31%), Gaps = 20/116 (17%) Query: 58 NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY--DIDMI 101 E CI C C +CP A T RY + Sbjct: 694 WDREICIQCGNCAIVCPHAAIRAKFYNKRRLQGAPTTFPSSNVTSRGFPDARYTLQVYAD 753 Query: 102 KCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIV 157 C CGLC +ACPV+ + + + +++ D+ R L + I N Sbjct: 754 DCTGCGLCVKACPVNHTADEHHHAINMQNKEKHLQDERRNLE----FFETIAYNRR 805 >gi|301062302|ref|ZP_07202968.1| pyridine nucleotide-disulfide oxidoreductase [delta proteobacterium NaphS2] gi|300443602|gb|EFK07701.1| pyridine nucleotide-disulfide oxidoreductase [delta proteobacterium NaphS2] Length = 722 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 1/64 (1%) Query: 63 CIACKLCEAICPAQAITIE-SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 CI C C IC + + R + + +CI CG C CP +AI Sbjct: 585 CIRCGACVDICRNKMGVDALQFGYLNFDHREPTDFRVTAERCILCGACAANCPTEAISMA 644 Query: 122 PNFE 125 E Sbjct: 645 DVGE 648 >gi|323703026|ref|ZP_08114682.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574] gi|323532039|gb|EGB21922.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574] Length = 613 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 26/75 (34%), Gaps = 10/75 (13%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 AL Y + C C C CP AIT E + I+ C CGLC Sbjct: 542 KALISYRVLADACKGCGRCSRECPTGAITGEKKMP----------FTINQEMCARCGLCI 591 Query: 111 EACPVDAIVEGPNFE 125 C +AI E Sbjct: 592 SVCKFNAITVTTGKE 606 Score = 38.2 bits (87), Expect = 0.45, Method: Composition-based stats. Identities = 10/49 (20%), Positives = 14/49 (28%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + I + + Y + C CG C CP AI Sbjct: 521 KYFRHEYEAHIFDKACPAKKCKALISYRVLADACKGCGRCSRECPTGAI 569 >gi|291563047|emb|CBL41863.1| Iron only hydrogenase large subunit, C-terminal domain [butyrate-producing bacterium SS3/4] Length = 513 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 6/66 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR------YDIDMIKCIYCGLCQEA 112 ++CI C C +C AI I+ P + DI+ KC+ CG C Sbjct: 156 DPDKCIKCGQCANVCAYHAIIIQERPCAAACGMDAIHSDENGKADINYDKCVSCGQCLVN 215 Query: 113 CPVDAI 118 CP AI Sbjct: 216 CPFGAI 221 Score = 39.3 bits (90), Expect = 0.20, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 28/92 (30%), Gaps = 9/92 (9%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 T P R Y + C +CP A++++ Sbjct: 96 KPETYYTPPLINVIKFACNACPEKRVYVTDGCQGCLAHPCVEVCPKDAVSLD-------- 147 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 R R ID KCI CG C C AI+ Sbjct: 148 -RTNGRSRIDPDKCIKCGQCANVCAYHAIIIQ 178 >gi|224369752|ref|YP_002603916.1| HydA2 [Desulfobacterium autotrophicum HRM2] gi|223692469|gb|ACN15752.1| HydA2 [Desulfobacterium autotrophicum HRM2] Length = 599 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 9/85 (10%) Query: 59 GEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 +CI C C +C A+ + ++ CI CG C CP Sbjct: 148 DMSKCIRCFRCVKVCREIQGIDALV-ITQKGLETEISVRDHLPLNESDCISCGQCILVCP 206 Query: 115 VDAIVEGPNFEFATETRQELYYDKE 139 V A+ N E A +L Y+ E Sbjct: 207 VGALAGRNNIEDAM----DLIYNPE 227 >gi|207742645|ref|YP_002259037.1| ferredoxin protein [Ralstonia solanacearum IPO1609] gi|206594039|emb|CAQ60966.1| ferredoxin protein [Ralstonia solanacearum IPO1609] Length = 708 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 9/74 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RC C C + CP+QA+ ++ + C+ CGLC+ CP DAI Sbjct: 576 DRARCTLCMACVSACPSQALRDQAE---------QPVLSMIERNCVQCGLCETTCPEDAI 626 Query: 119 VEGPNFEFATETRQ 132 P + RQ Sbjct: 627 ALVPRLNLSAGARQ 640 Score = 41.6 bits (96), Expect = 0.035, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 7/55 (12%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C+ C +C A AIT + + C+ CG C ACP A+ Sbjct: 323 VGCEACVQVCSAAAITSQWKDGRGSVH-------VTPNLCVGCGACTTACPTGAL 370 Score = 38.5 bits (88), Expect = 0.29, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 20/48 (41%) Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 A +T G + R ID+ +C C C +ACP DAI Sbjct: 168 WPVHAGELTQVGGWLGAFDVQWRSRNPIDLDRCTRCNACIDACPEDAI 215 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 1/66 (1%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-IDMI 101 S R + E C+ C LCE CP AI + G R+ V + + Sbjct: 591 PSQALRDQAEQPVLSMIERNCVQCGLCETTCPEDAIALVPRLNLSAGARQPVTLNATEPF 650 Query: 102 KCIYCG 107 CI CG Sbjct: 651 HCIRCG 656 Score = 35.5 bits (80), Expect = 2.5, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 32/118 (27%), Gaps = 21/118 (17%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYP-----NGEERCIACKLCEAICPAQAITIESGP 84 +P G + A +RC C C CP AI Sbjct: 162 PPMARRWPVHAGELTQVGGWLGAFDVQWRSRNPIDLDRCTRCNACIDACPEDAID----- 216 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEAC-PVDAIVEGPNFEFATET-RQELYYDKER 140 Y ID+ C C +AC AI G T R +L +D Sbjct: 217 ---------TLYQIDLDACRDHRDCVKACGEAMAIDFGRLDAPQTYAGRFDLIFDLND 265 >gi|170696011|ref|ZP_02887149.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia graminis C4D1M] gi|170139091|gb|EDT07281.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia graminis C4D1M] Length = 413 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 11/68 (16%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 LR++ E CI C CE CP AIT + Y + C C C Sbjct: 8 EVLRQHLIDPEICIRCNTCEETCPIDAITHDDN-----------NYVVKADVCNGCMACV 56 Query: 111 EACPVDAI 118 CP AI Sbjct: 57 PPCPTGAI 64 Score = 37.0 bits (84), Expect = 0.95, Method: Composition-based stats. Identities = 13/26 (50%), Positives = 15/26 (57%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPN 123 ID CI C C+E CP+DAI N Sbjct: 15 IDPEICIRCNTCEETCPIDAITHDDN 40 >gi|168187508|ref|ZP_02622143.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium botulinum C str. Eklund] gi|169294609|gb|EDS76742.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium botulinum C str. Eklund] Length = 1168 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 30/130 (23%), Positives = 41/130 (31%), Gaps = 26/130 (20%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTRRTVRYDIDMIK--- 102 A+ E CI C C +CP I T E +G + I K Sbjct: 676 IAINVPEWSMENCIQCNQCSYVCPHAVIRPTLLTEEEYKNKPEGFKAVEAKGIKGEKLYY 735 Query: 103 --------CIYCGLCQEAC--PVDAIVEGP----NFEFATETRQELYYDKE----RLLNN 144 C CG C E C P A+V P E A + KE + Sbjct: 736 SMNVSVLDCTGCGNCAEVCPAPTKALVMKPSATQEAEQANYDYAQTLAVKENPMDKYTVK 795 Query: 145 GDRWESEIVR 154 G ++E ++ Sbjct: 796 GSQFEKPLLE 805 >gi|218780619|ref|YP_002431937.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfatibacillum alkenivorans AK-01] gi|218762003|gb|ACL04469.1| Putative uncharacterized protein (contains partial HdrA and MvhD domains) [Desulfatibacillum alkenivorans AK-01] Length = 532 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 15/79 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++C C C CP AI +S R I C CG+C CP DAI Sbjct: 335 DVDKCTVCLTCYRCCPHGAIYWDS------------RAIIAESACQGCGICASECPNDAI 382 Query: 119 VEGPNFEFATETRQELYYD 137 G ++A + + D Sbjct: 383 QLG---DYADDAMAQAIKD 398 >gi|221135173|ref|ZP_03561476.1| electron transport complex protein RnfB [Glaciecola sp. HTCC2999] Length = 193 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 31/96 (32%), Gaps = 10/96 (10%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E E + E CI C C CP AI S + + Sbjct: 90 EPKPLDGDHGVEEVKKVAYIREAECIGCTKCIQACPVDAIIGASKQ----------MHTV 139 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134 + +C C LC CPVD I P E + +L Sbjct: 140 IVDECTGCDLCVAPCPVDCIDMLPVKETPQTWQWDL 175 >gi|86358877|ref|YP_470769.1| dihydropyrimidine dehydrogenase [Rhizobium etli CFN 42] gi|86282979|gb|ABC92042.1| probable dihydroorotate oxidase protein [Rhizobium etli CFN 42] Length = 437 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 31/94 (32%), Gaps = 6/94 (6%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI C C A S +++ +C+ Sbjct: 330 QYLNLNYVAKAKIDQDACIKCGRCHI-----ACEDTSHQAITSVVNGLRHFEVIEEECVG 384 Query: 106 CGLCQEACPV-DAIVEGPNFEFATETRQELYYDK 138 C LC CPV + I P + R D Sbjct: 385 CNLCVNVCPVENCITMEPLAAGTIDKRTGRVVDP 418 >gi|328912744|gb|AEB64340.1| Putative formate dehydrogenase yrhE [Bacillus amyloliquefaciens LL3] Length = 982 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 4/91 (4%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+ S + + Y +CIAC C +C + R Sbjct: 126 HQKYPYTPKDDSKCAV-DMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWERDRPR 184 Query: 93 TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120 + + I+ C+ CG C CP +A++E Sbjct: 185 VIWDEGVAINESSCVSCGQCVTVCPCNALME 215 >gi|309389874|gb|ADO77754.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Halanaerobium praevalens DSM 2228] Length = 601 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 29/64 (45%), Gaps = 10/64 (15%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 Y EE CI C C +CP AI+ E + ID CI CG C+ CP Sbjct: 545 YYIIDEEACIGCSKCSKVCPVDAISGEIK----------NPFKIDPDVCIACGACEPECP 594 Query: 115 VDAI 118 VDAI Sbjct: 595 VDAI 598 >gi|332652559|ref|ZP_08418304.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Ruminococcaceae bacterium D16] gi|332517705|gb|EGJ47308.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Ruminococcaceae bacterium D16] Length = 1181 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 31/103 (30%), Gaps = 18/103 (17%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-----------------QAITI 80 FE G+ + RG + +CI C C +CP +A I Sbjct: 672 FELGAAAYEKRGVAVMVPTW-DATKCIQCNQCSFVCPHATIRPFMLTEEEAAAAPEAAKI 730 Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 I + C+ C +C CP A+ P Sbjct: 731 VDVKAGKGKGVYKFAMAISPLDCMGCTVCAGVCPTKALTMVPQ 773 >gi|299537486|ref|ZP_07050780.1| formate dehydrogenase alpha chain [Lysinibacillus fusiformis ZC1] gi|298727047|gb|EFI67628.1| formate dehydrogenase alpha chain [Lysinibacillus fusiformis ZC1] Length = 978 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP++ + + Y +CIAC C +C + R Sbjct: 119 HQKYPYQPKVEP--HEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSLDWEAERPR 176 Query: 93 TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120 + I+ C+ CG C CP +A++E Sbjct: 177 VIWDTGVAINDSSCVSCGQCVTVCPCNALME 207 Score = 40.1 bits (92), Expect = 0.095, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 22/71 (30%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGP-------RCHDGTRRTVRYDIDMIK 102 R N C C C A+ + IE H+ Y D + Sbjct: 87 RLLENHLLYCTVCDNNNGNCALHNTAEMMEIEHQKYPYQPKVEPHEVDMSHPFYRYDPNQ 146 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 147 CIACGQCVEVC 157 >gi|295091990|emb|CBK78097.1| Uncharacterized Fe-S center protein [Clostridium cf. saccharolyticum K10] Length = 368 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 11/64 (17%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 +++CI C CE C AI+ ID KC+ CG C CPVDA+ Sbjct: 194 QDQCIGCHACERDCAHGAISFPEKKAF-----------IDESKCVGCGRCIGVCPVDAVA 242 Query: 120 EGPN 123 + Sbjct: 243 NHCD 246 >gi|307729116|ref|YP_003906340.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia sp. CCGE1003] gi|307583651|gb|ADN57049.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia sp. CCGE1003] Length = 412 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 11/68 (16%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 LR++ E CI C CE CP AIT + Y + C C C Sbjct: 8 EVLRQHLIDPEICIRCNTCEETCPIDAITHDEN-----------NYVVKADVCNGCMACV 56 Query: 111 EACPVDAI 118 CP AI Sbjct: 57 PPCPTGAI 64 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 13/26 (50%), Positives = 15/26 (57%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPN 123 ID CI C C+E CP+DAI N Sbjct: 15 IDPEICIRCNTCEETCPIDAITHDEN 40 >gi|239628141|ref|ZP_04671172.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239518287|gb|EEQ58153.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 483 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 25/68 (36%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110 +C C C CP AI P + YD ID KCI CG C Sbjct: 125 YIDPAKCKECGKCSQACPYNAIAHLERPCKKICPVDAITYDEYGICVIDEKKCIQCGACI 184 Query: 111 EACPVDAI 118 +CP AI Sbjct: 185 HSCPFGAI 192 >gi|157962813|ref|YP_001502847.1| FAD linked oxidase domain-containing protein [Shewanella pealeana ATCC 700345] gi|157847813|gb|ABV88312.1| FAD linked oxidase domain protein [Shewanella pealeana ATCC 700345] Length = 939 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 35/93 (37%), Gaps = 9/93 (9%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 E + I + + D + KCI CG C++ CP A+ P AT Sbjct: 509 EGLLNPGVILNDDNQIHVKNIKPCPVVDDLVDKCIECGFCEKTCPTSALNMSPRQRIATL 568 Query: 130 TRQELYYDKERLLNNGDRWESEIVRNIVTDSPY 162 R+ ERL +GD+ + + + Y Sbjct: 569 -RE-----IERLEQSGDK---QAAEQMRAAAKY 592 Score = 37.4 bits (85), Expect = 0.64, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 18/76 (23%) Query: 57 PNGEERCIACKLCEAICPAQAITIES-----------------GPRCHDGTRRTVRYDID 99 + ++CI C CE CP A+ + + + R +YD+ Sbjct: 536 DDLVDKCIECGFCEKTCPTSALNMSPRQRIATLREIERLEQSGDKQAAEQMRAAAKYDVV 595 Query: 100 MIKCIYCGLCQEACPV 115 C C LC ACPV Sbjct: 596 -DTCAACQLCTIACPV 610 >gi|328554340|gb|AEB24832.1| YrhE [Bacillus amyloliquefaciens TA208] Length = 980 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 4/91 (4%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+ S + + Y +CIAC C +C + R Sbjct: 124 HQKYPYTPKDDSKCAV-DMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWERDRPR 182 Query: 93 TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120 + + I+ C+ CG C CP +A++E Sbjct: 183 VIWDEGVAINESSCVSCGQCVTVCPCNALME 213 >gi|217966957|ref|YP_002352463.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724] gi|217336056|gb|ACK41849.1| NADH dehydrogenase (quinone) [Dictyoglomus turgidum DSM 6724] Length = 624 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 26/67 (38%), Positives = 29/67 (43%), Gaps = 10/67 (14%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 A +RY E C C LC CP AI+ E G Y ID KC CG+C E Sbjct: 565 AFKRYVINPELCKGCGLCARFCPQNAISGERGKP----------YVIDQEKCAKCGVCVE 614 Query: 112 ACPVDAI 118 C AI Sbjct: 615 KCKFKAI 621 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 15/39 (38%) Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 G RY I+ C CGLC CP +AI Sbjct: 553 HIEGICPSGMCTAFKRYVINPELCKGCGLCARFCPQNAI 591 >gi|187776798|ref|ZP_02993271.1| hypothetical protein CLOSPO_00314 [Clostridium sporogenes ATCC 15579] gi|187775457|gb|EDU39259.1| hypothetical protein CLOSPO_00314 [Clostridium sporogenes ATCC 15579] Length = 398 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 12/58 (20%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+C AC +CE CP AI + +G + KC CG C EACP DAI Sbjct: 8 EKCKACGICEKQCPFDAIHVINGLAEVN------------EKCTICGACVEACPFDAI 53 Score = 37.0 bits (84), Expect = 0.97, Method: Composition-based stats. Identities = 11/22 (50%), Positives = 14/22 (63%) Query: 98 IDMIKCIYCGLCQEACPVDAIV 119 I KC CG+C++ CP DAI Sbjct: 5 IIKEKCKACGICEKQCPFDAIH 26 >gi|117920614|ref|YP_869806.1| electron transport complex protein RnfC [Shewanella sp. ANA-3] gi|117612946|gb|ABK48400.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella sp. ANA-3] Length = 788 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 42/126 (33%), Gaps = 11/126 (8%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 TI P KG+ + P + CI C C A P+ + Sbjct: 349 TIQVPILKGTNCILVPSSQEIGTTPEE-KACIRCGECA-----NACPALLLPQQLFWHAK 402 Query: 93 TVRYD----IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRW 148 YD ++ CI CG C CP I + A ++ +K + R+ Sbjct: 403 AEEYDKAASYNLKDCIECGCCSYVCP-SDIPLVEYYRIAKSALKQAADEKHQAERAKQRF 461 Query: 149 ESEIVR 154 E+ I R Sbjct: 462 EARIQR 467 >gi|110834472|ref|YP_693331.1| electron transport complex protein RnfC [Alcanivorax borkumensis SK2] gi|110647583|emb|CAL17059.1| electron transport complex protein rnfC [Alcanivorax borkumensis SK2] Length = 991 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 40/97 (41%), Gaps = 12/97 (12%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C C +CPA + + + ++ +++ CI CG C CP I Sbjct: 398 CIRCGSCAEVCPANLLPQQLYWHAKNDDLEKAQH-HNLMDCIECGACAYVCPSH-IPLVQ 455 Query: 123 NFEFAT-ETRQ----ELYYDKERLLNNGDRWESEIVR 154 + +A E RQ +L DK R R+E+ R Sbjct: 456 YYRYAKAEVRQQAADQLKADKAR-----QRFEARQAR 487 >gi|328952277|ref|YP_004369611.1| Pyruvate dehydrogenase (NADP(+)), 2-oxoglutarate synthase [Desulfobacca acetoxidans DSM 11109] gi|328452601|gb|AEB08430.1| Pyruvate dehydrogenase (NADP(+))., 2-oxoglutarate synthase [Desulfobacca acetoxidans DSM 11109] Length = 1292 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 24/144 (16%), Positives = 36/144 (25%), Gaps = 32/144 (22%) Query: 2 RIFRCNVSFLFLKE---FVGAFFLCLRYF--FKAKTTINYPFEKGSTSPRFRGEHALRRY 56 + +L+ + + +F T Y F G Sbjct: 745 NLIPNYQEIFYLEMVHPLIEGRRISWDHFLPVVPAATTRYRDV------SFIGTQLPVWD 798 Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRC------------------HDGTRRTVRYDI 98 +C AC C A CP A+ R R + D Sbjct: 799 A---AKCTACGTCTASCPDSALFCTVTERPIPEEYERFFKVFKKPPKGVPWERFAMNIDA 855 Query: 99 DMIKCIYCGLCQEACPVDAIVEGP 122 C CG+C CP +A+ Sbjct: 856 VPSACKGCGVCAAVCPTNALRMVD 879 >gi|288575050|ref|ZP_06393407.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570791|gb|EFC92348.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 1173 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 29/88 (32%), Gaps = 16/88 (18%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQA----------------ITIESGPRCHDGTRRTV 94 A+ ++CI C C +CP A + + Sbjct: 679 VAIDVPEWIMDKCIQCNQCAMVCPHAAIRPVLLNEDEMSLAPKNFEVIDAKGKELEGLKF 738 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGP 122 R + + C+ CG C + CPV A+ P Sbjct: 739 RMQVSPLDCLGCGNCADICPVKALEMKP 766 >gi|86359332|ref|YP_471224.1| NADH-ubiquinone oxidoreductase chain G protein [Rhizobium etli CFN 42] gi|86283434|gb|ABC92497.1| NADH-ubiquinone oxidoreductase chain G protein [Rhizobium etli CFN 42] Length = 859 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 3/80 (3%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 + S R + N RCI C+ C +C + G ++ Sbjct: 128 RVFHSQDIRLSPVIIMNVN---RCIQCQRCVRMCEEVVGAVALGTVEKGMDTAVTGFEGS 184 Query: 100 MIKCIYCGLCQEACPVDAIV 119 + C CG C E CPV A++ Sbjct: 185 LASCDQCGNCVEVCPVGALM 204 >gi|313887911|ref|ZP_07821590.1| electron transport complex, RnfABCDGE type, B subunit [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846077|gb|EFR33459.1| electron transport complex, RnfABCDGE type, B subunit [Peptoniphilus harei ACS-146-V-Sch2b] Length = 305 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 33/91 (36%), Gaps = 11/91 (12%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 K P++ + + N CI C +CE CP AI +E+ Sbjct: 184 KKIISLRPYKSKTVVECKSLDSGKVVRNNCSIGCIGCGICEKNCPKDAIHVENNLAS--- 240 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ID KCI CG+C CP AI Sbjct: 241 --------IDYDKCINCGICVSKCPTGAIYC 263 Score = 40.5 bits (93), Expect = 0.072, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 34/78 (43%), Gaps = 5/78 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCIYCGLCQEAC 113 +E+C+AC C ICP + I++ + V + I CI CG+C++ C Sbjct: 168 DKEKCVACMKCINICPKKIISLRPYKSKTVVECKSLDSGKVVRNNCSIGCIGCGICEKNC 227 Query: 114 PVDAIVEGPNFEFATETR 131 P DAI N + Sbjct: 228 PKDAIHVENNLASIDYDK 245 >gi|261378107|ref|ZP_05982680.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria cinerea ATCC 14685] gi|269145561|gb|EEZ71979.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria cinerea ATCC 14685] Length = 279 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 24/66 (36%), Gaps = 10/66 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C C CP AI S + + +C CGLC CPVD Sbjct: 73 WIDESACIGCTACIRACPTDAIMGASK----------FMHTVIADECTGCGLCIAPCPVD 122 Query: 117 AIVEGP 122 I P Sbjct: 123 CIHMQP 128 >gi|255654945|ref|ZP_05400354.1| iron-dependent hydrogenase [Clostridium difficile QCD-23m63] gi|296449691|ref|ZP_06891461.1| periplasmic hydrogenase 1 [Clostridium difficile NAP08] gi|296877992|ref|ZP_06902011.1| periplasmic hydrogenase 1 [Clostridium difficile NAP07] gi|296261415|gb|EFH08240.1| periplasmic hydrogenase 1 [Clostridium difficile NAP08] gi|296431060|gb|EFH16888.1| periplasmic hydrogenase 1 [Clostridium difficile NAP07] Length = 498 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 7/69 (10%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIKCIYCGLC 109 + C AC +C++ C AI+ P R T++ I CI CG C Sbjct: 138 YINHDLCKACGMCKSSCQYDAISEVVRPCKSVCPTGALDFNRNTMKAMIHEDNCINCGAC 197 Query: 110 QEACPVDAI 118 ACP AI Sbjct: 198 MSACPFGAI 206 >gi|83409915|emb|CAI64336.1| heterodisulfide reductase like protein, subunit A [uncultured archaeon] Length = 1024 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 1/61 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-DIDMIKCIYCGLCQEACPVDA 117 E CI C C +CP +A ++ + + +I+ C CG C CP A Sbjct: 943 DPELCIGCGRCTLVCPYKAPELKEVTVETEEIVYITKKSEINPAVCKGCGSCAAECPTGA 1002 Query: 118 I 118 I Sbjct: 1003 I 1003 Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 12/91 (13%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR-------TVRY 96 F + ++C AC+LC + CP + + + + + Sbjct: 104 PGNFTVTVKKKATYVDYDKCTACELCVSKCPVKVPDEYNEGQNNRKAIYLAFPQAVPRVF 163 Query: 97 DIDMIKCIY-----CGLCQEACPVDAIVEGP 122 ID C+Y CG CQ+AC DAI Sbjct: 164 TIDAEHCLYLTKGKCGNCQKACENDAINFED 194 >gi|321314956|ref|YP_004207243.1| putative oxidoreductase [Bacillus subtilis BSn5] gi|320021230|gb|ADV96216.1| putative oxidoreductase [Bacillus subtilis BSn5] Length = 985 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 9/101 (8%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 ++ + PF+ + + + Y ++CI C C C +T Sbjct: 114 TVKEM--KINHQSIPFDHKP----YHKDESHPFYRYDPDQCILCGRCVEACQDVQVTETL 167 Query: 83 GPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPVDAIVE 120 R + + I+ C+ CG C CP +A++E Sbjct: 168 TIDWERKRPRVIWDNDVPINESSCVSCGHCSTVCPCNAMME 208 Score = 40.5 bits (93), Expect = 0.079, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 21/66 (31%), Gaps = 9/66 (13%) Query: 57 PNGEERCIAC----KLCEAICPA-----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 N E C C CE +I + + Y D +CI CG Sbjct: 93 YNHELYCTVCDYNNGGCEIHNTVKEMKINHQSIPFDHKPYHKDESHPFYRYDPDQCILCG 152 Query: 108 LCQEAC 113 C EAC Sbjct: 153 RCVEAC 158 >gi|293557151|ref|ZP_06675705.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecium E1039] gi|291600720|gb|EFF31018.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecium E1039] Length = 1230 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 20/93 (21%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTV 94 AL +RC C C +CP AI I R DG + Sbjct: 680 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMEEAPEGFIVREMRGADGVKY-- 737 Query: 95 RYDIDMIKCIYCGLCQEACP--VDAIVEGPNFE 125 R + + C CGLC EACP A+V P E Sbjct: 738 RIQVSVEDCTGCGLCVEACPAKEKALVMKPYEE 770 >gi|294616487|ref|ZP_06696268.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecium E1636] gi|291590635|gb|EFF22363.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecium E1636] Length = 1230 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 20/93 (21%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTV 94 AL +RC C C +CP AI I R DG + Sbjct: 680 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMEEAPEGFIVREMRGADGVKY-- 737 Query: 95 RYDIDMIKCIYCGLCQEACP--VDAIVEGPNFE 125 R + + C CGLC EACP A+V P E Sbjct: 738 RIQVSVEDCTGCGLCVEACPAKEKALVMKPYEE 770 >gi|289565854|ref|ZP_06446295.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecium D344SRF] gi|289162314|gb|EFD10173.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecium D344SRF] Length = 1230 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 20/93 (21%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTV 94 AL +RC C C +CP AI I R DG + Sbjct: 680 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMEEAPEGFIVREMRGADGVKY-- 737 Query: 95 RYDIDMIKCIYCGLCQEACP--VDAIVEGPNFE 125 R + + C CGLC EACP A+V P E Sbjct: 738 RIQVSVEDCTGCGLCVEACPAKEKALVMKPYEE 770 >gi|282853212|ref|ZP_06262549.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes J139] gi|282582665|gb|EFB88045.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes J139] Length = 595 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 23/62 (37%), Gaps = 9/62 (14%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C C CP AI + RY+ + KC C C + CPV AI Sbjct: 504 NCFECDGCYGSCPEDAI---------IKLGKGHRYEFNYDKCTGCATCFDQCPVHAIEMI 554 Query: 122 PN 123 P Sbjct: 555 PE 556 >gi|257884388|ref|ZP_05664041.1| pyruvate decarboxylase [Enterococcus faecium 1,231,501] gi|257820226|gb|EEV47374.1| pyruvate decarboxylase [Enterococcus faecium 1,231,501] Length = 1227 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 20/93 (21%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTV 94 AL +RC C C +CP AI I R DG + Sbjct: 677 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMEEAPEGFIVREMRGADGVKY-- 734 Query: 95 RYDIDMIKCIYCGLCQEACP--VDAIVEGPNFE 125 R + + C CGLC EACP A+V P E Sbjct: 735 RIQVSVEDCTGCGLCVEACPAKEKALVMKPYEE 767 >gi|257878479|ref|ZP_05658132.1| pyruvate decarboxylase [Enterococcus faecium 1,230,933] gi|257882901|ref|ZP_05662554.1| pyruvate decarboxylase [Enterococcus faecium 1,231,502] gi|257889321|ref|ZP_05668974.1| pyruvate decarboxylase [Enterococcus faecium 1,231,410] gi|257894334|ref|ZP_05673987.1| pyruvate decarboxylase [Enterococcus faecium 1,231,408] gi|260560068|ref|ZP_05832246.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecium C68] gi|257812707|gb|EEV41465.1| pyruvate decarboxylase [Enterococcus faecium 1,230,933] gi|257818559|gb|EEV45887.1| pyruvate decarboxylase [Enterococcus faecium 1,231,502] gi|257825681|gb|EEV52307.1| pyruvate decarboxylase [Enterococcus faecium 1,231,410] gi|257830713|gb|EEV57320.1| pyruvate decarboxylase [Enterococcus faecium 1,231,408] gi|260073903|gb|EEW62227.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecium C68] Length = 1227 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 20/93 (21%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTV 94 AL +RC C C +CP AI I R DG + Sbjct: 677 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMEEAPEGFIVREMRGADGVKY-- 734 Query: 95 RYDIDMIKCIYCGLCQEACP--VDAIVEGPNFE 125 R + + C CGLC EACP A+V P E Sbjct: 735 RIQVSVEDCTGCGLCVEACPAKEKALVMKPYEE 767 >gi|288940083|ref|YP_003442323.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Allochromatium vinosum DSM 180] gi|288895455|gb|ADC61291.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Allochromatium vinosum DSM 180] Length = 139 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 28/102 (27%), Positives = 36/102 (35%), Gaps = 14/102 (13%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80 L R T YP E+ + R RG R C C +C CP QAI Sbjct: 12 SLVTRSALAKPATRLYPAERRTPYARTRGHIEFRID-----TCNFCTICAHKCPTQAI-- 64 Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 ++ + ID +CI C +C E C I P Sbjct: 65 -------QVSKLDKTWAIDHSRCILCSICVEDCREGCITLSP 99 >gi|240168690|ref|ZP_04747349.1| putative glutamate synthase (NADPH) small subunit [Mycobacterium kansasii ATCC 12478] Length = 551 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 29/87 (33%), Gaps = 3/87 (3%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P ++ + G + R RC++C C + R RY Sbjct: 466 PRQRVTGFDEVVGGLSDRAATFEAGRCLSCGNC--FECDGCLGSCPEDAV-IKLGRGHRY 522 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPN 123 D +C C C E CPV AI P Sbjct: 523 RFDYDRCTGCATCYEQCPVHAIEMIPE 549 >gi|238619159|ref|YP_002913984.1| thiamine pyrophosphate protein domain protein TPP-binding [Sulfolobus islandicus M.16.4] gi|238380228|gb|ACR41316.1| thiamine pyrophosphate protein domain protein TPP-binding [Sulfolobus islandicus M.16.4] Length = 612 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 23/71 (32%), Gaps = 10/71 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L + E+C C +C AI + ID CI CG C Sbjct: 541 LPKAIVDLEKCTGCSICYDYFTCPAIIPRKDKKAE----------IDNYTCIGCGACIPV 590 Query: 113 CPVDAIVEGPN 123 CP AI N Sbjct: 591 CPFKAISLKGN 601 >gi|227827015|ref|YP_002828794.1| thiamine pyrophosphate protein domain protein TPP-binding [Sulfolobus islandicus M.14.25] gi|227458810|gb|ACP37496.1| thiamine pyrophosphate protein domain protein TPP-binding [Sulfolobus islandicus M.14.25] Length = 612 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 23/71 (32%), Gaps = 10/71 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L + E+C C +C AI + ID CI CG C Sbjct: 541 LPKAIVDLEKCTGCSICYDYFTCPAIIPRKDKKAE----------IDNYTCIGCGACIPV 590 Query: 113 CPVDAIVEGPN 123 CP AI N Sbjct: 591 CPFKAISLKGN 601 >gi|227829891|ref|YP_002831670.1| thiamine pyrophosphate protein domain protein TPP-binding [Sulfolobus islandicus L.S.2.15] gi|227456338|gb|ACP35025.1| thiamine pyrophosphate protein domain protein TPP-binding [Sulfolobus islandicus L.S.2.15] Length = 612 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 23/71 (32%), Gaps = 10/71 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L + E+C C +C AI + ID CI CG C Sbjct: 541 LPKAIVDLEKCTGCSICYDYFTCPAIIPRKDKKAE----------IDNYTCIGCGACIPV 590 Query: 113 CPVDAIVEGPN 123 CP AI N Sbjct: 591 CPFKAISLKGN 601 >gi|218883674|ref|YP_002428056.1| Indolepyruvate oxidoreductase subunit iorA [Desulfurococcus kamchatkensis 1221n] gi|218765290|gb|ACL10689.1| Indolepyruvate oxidoreductase subunit iorA [Desulfurococcus kamchatkensis 1221n] Length = 637 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 13/82 (15%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R + L Y E++CI C C + AI + +G + I C CG Sbjct: 562 RKQVVLPIYTIVEDKCIGCMACVNLTACPAIIVPAGSKKPI---------ILEELCNGCG 612 Query: 108 LCQEACPVDAI----VEGPNFE 125 LC CP AI P +E Sbjct: 613 LCASICPYKAITVKNTPSPEWE 634 >gi|193211705|ref|YP_001997658.1| putative glutamate synthase (NADPH) small subunit [Chlorobaculum parvum NCIB 8327] gi|193085182|gb|ACF10458.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Chlorobaculum parvum NCIB 8327] Length = 578 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 29/96 (30%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 + +AK T P E + ERC++C C + + Sbjct: 478 HTPQAKRTTIEPEEVVGNHDELLEALTHEEAKSESERCMSCGFCFDCKQCVSFCPQEAIT 537 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 + + KC+ C LC CP I G Sbjct: 538 RFRDNPAGEKVYTNYAKCVGCHLCSLVCPCGYIQMG 573 >gi|69245966|ref|ZP_00603738.1| Pyruvate decarboxylase:4Fe-4S ferredoxin, iron-sulfur binding:Pyruvate ferredoxin/flavodoxin oxidoreductase:Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal [Enterococcus faecium DO] gi|258615996|ref|ZP_05713766.1| pyruvate ferredoxin/flavodoxin oxidoreductase family protein [Enterococcus faecium DO] gi|293559805|ref|ZP_06676323.1| pyruvate:ferredoxin [Enterococcus faecium E1162] gi|294623416|ref|ZP_06702272.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecium U0317] gi|314939691|ref|ZP_07846915.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecium TX0133a04] gi|314942220|ref|ZP_07849072.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecium TX0133C] gi|314948853|ref|ZP_07852223.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecium TX0082] gi|314950795|ref|ZP_07853867.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecium TX0133A] gi|314992225|ref|ZP_07857665.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecium TX0133B] gi|314995217|ref|ZP_07860330.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecium TX0133a01] gi|68195496|gb|EAN09940.1| Pyruvate decarboxylase:4Fe-4S ferredoxin, iron-sulfur binding:Pyruvate ferredoxin/flavodoxin oxidoreductase:Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal [Enterococcus faecium DO] gi|291597182|gb|EFF28377.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecium U0317] gi|291606224|gb|EFF35640.1| pyruvate:ferredoxin [Enterococcus faecium E1162] gi|313590547|gb|EFR69392.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecium TX0133a01] gi|313593225|gb|EFR72070.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecium TX0133B] gi|313597010|gb|EFR75855.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecium TX0133A] gi|313598992|gb|EFR77837.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecium TX0133C] gi|313641026|gb|EFS05606.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecium TX0133a04] gi|313644726|gb|EFS09306.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecium TX0082] Length = 1230 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 20/93 (21%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTV 94 AL +RC C C +CP AI I R DG + Sbjct: 680 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMEEAPEGFIVREMRGADGVKY-- 737 Query: 95 RYDIDMIKCIYCGLCQEACP--VDAIVEGPNFE 125 R + + C CGLC EACP A+V P E Sbjct: 738 RIQVSVEDCTGCGLCVEACPAKEKALVMKPYEE 770 >gi|319790462|ref|YP_004152095.1| NADH dehydrogenase subunit I [Thermovibrio ammonificans HB-1] gi|317114964|gb|ADU97454.1| NADH dehydrogenase subunit I [Thermovibrio ammonificans HB-1] Length = 192 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 12/108 (11%) Query: 25 RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84 + F K T + + +RG+H +R E CI C LC CP I + Sbjct: 22 KAVFAPKATEIWWDKGVRRELHYRGKHIIR-----AELCIGCSLCSRACPVNCIDMVPTG 76 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPV---DAIVEGPNFEFATE 129 + + +C++CGLC++ACP AI + E Sbjct: 77 VK----KPRAVPRVRANECMFCGLCEDACPTKPEKAIKLTDEYRMFVE 120 >gi|315126996|ref|YP_004068999.1| electron transport complex protein RnfC [Pseudoalteromonas sp. SM9913] gi|315015510|gb|ADT68848.1| electron transport complex protein RnfC [Pseudoalteromonas sp. SM9913] Length = 679 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 2/92 (2%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C C CPA + + + ++ CI CG C CP I Sbjct: 377 CIRCSACADACPAS-LLPQQLQWFAKSKEYDKLQEHNLFDCIECGACAYVCP-SEIPLVQ 434 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVR 154 + A +E +K + +R+++ R Sbjct: 435 YYRVAKVEIKEQIAEKIKSDRAKERFDARKAR 466 >gi|317060630|ref|ZP_07925115.1| hydrogenase [Fusobacterium sp. D12] gi|313686306|gb|EFS23141.1| hydrogenase [Fusobacterium sp. D12] Length = 599 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 31/85 (36%), Gaps = 10/85 (11%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 E G+ E+CI C C +CP + I R Sbjct: 147 EEHVEDLKCPAGQCIHLLKFKITEKCIGCTACARVCPVKCIAGAPKKRHF---------- 196 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 +D +C +CG C ACPV AI EG Sbjct: 197 LDTSRCTHCGQCVSACPVGAIFEGD 221 >gi|207721377|ref|YP_002251818.1| ferredoxin protein [Ralstonia solanacearum MolK2] gi|206586536|emb|CAQ17123.1| ferredoxin protein [Ralstonia solanacearum MolK2] Length = 708 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 9/74 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RC C C + CP+QA+ ++ + C+ CGLC+ CP DAI Sbjct: 576 DRARCTLCMACVSACPSQALRDQAE---------QPVLSMIERNCVQCGLCETTCPEDAI 626 Query: 119 VEGPNFEFATETRQ 132 P + RQ Sbjct: 627 ALVPRLNLSAGARQ 640 Score = 40.9 bits (94), Expect = 0.059, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 7/55 (12%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C+ C +C A AIT + + C+ CG C ACP A+ Sbjct: 323 VGCEACVRVCSAVAITSQWKDGRGSVH-------VTPNLCVGCGACTTACPTGAL 370 Score = 38.5 bits (88), Expect = 0.30, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 20/48 (41%) Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 A +T G + R ID+ +C C C +ACP DAI Sbjct: 168 WPVHAGELTQVGGWLGAFDVQWRSRNPIDLDRCTRCNACIDACPEDAI 215 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 1/66 (1%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-IDMI 101 S R + E C+ C LCE CP AI + G R+ V + + Sbjct: 591 PSQALRDQAEQPVLSMIERNCVQCGLCETTCPEDAIALVPRLNLSAGARQPVTLNATEPF 650 Query: 102 KCIYCG 107 CI CG Sbjct: 651 HCIRCG 656 Score = 35.5 bits (80), Expect = 2.6, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 32/118 (27%), Gaps = 21/118 (17%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYP-----NGEERCIACKLCEAICPAQAITIESGP 84 +P G + A +RC C C CP AI Sbjct: 162 PPMARRWPVHAGELTQVGGWLGAFDVQWRSRNPIDLDRCTRCNACIDACPEDAID----- 216 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEAC-PVDAIVEGPNFEFATET-RQELYYDKER 140 Y ID+ C C +AC AI G T R +L +D Sbjct: 217 ---------TLYQIDLDACRDHRDCVKACGEAMAIDFGRLDAPQTYAGRFDLIFDLND 265 >gi|153807872|ref|ZP_01960540.1| hypothetical protein BACCAC_02158 [Bacteroides caccae ATCC 43185] gi|149129481|gb|EDM20695.1| hypothetical protein BACCAC_02158 [Bacteroides caccae ATCC 43185] Length = 459 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 39/89 (43%), Gaps = 5/89 (5%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVR 95 PF G SPR R A ++CI C+ CE++C Q + S R T Sbjct: 2 PFNGGELSPRKREITA--SIVRNMDKCIFCRRCESVCNDVQTVGALSAIRRGFNTTIAPA 59 Query: 96 YDIDM--IKCIYCGLCQEACPVDAIVEGP 122 +D M +C YCG C CPV A+ E Sbjct: 60 FDRMMTESECTYCGQCVAVCPVGALTERD 88 >gi|295115197|emb|CBL36044.1| Uncharacterized Fe-S center protein [butyrate-producing bacterium SM4/1] Length = 368 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 11/64 (17%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 +++CI C CE C AI+ ID KC+ CG C CPVDA+ Sbjct: 194 QDQCIGCHACERDCAHGAISFPEKKAF-----------IDESKCVGCGRCIGVCPVDAVA 242 Query: 120 EGPN 123 + Sbjct: 243 NHCD 246 >gi|283797800|ref|ZP_06346953.1| iron-sulfur cluster-binding protein [Clostridium sp. M62/1] gi|291074483|gb|EFE11847.1| iron-sulfur cluster-binding protein [Clostridium sp. M62/1] Length = 368 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 11/64 (17%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 +++CI C CE C AI+ ID KC+ CG C CPVDA+ Sbjct: 194 QDQCIGCHACERDCAHGAISFPEKKAF-----------IDESKCVGCGRCIGVCPVDAVA 242 Query: 120 EGPN 123 + Sbjct: 243 NHCD 246 >gi|154418685|ref|XP_001582360.1| pyruvate:ferredoxin oxidoreductase A [Trichomonas vaginalis G3] gi|622958|gb|AAA85494.1| pyruvate:ferredoxin oxidoreductase proprotein [Trichomonas vaginalis] gi|121916595|gb|EAY21374.1| pyruvate:ferredoxin oxidoreductase A [Trichomonas vaginalis G3] Length = 1157 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 33/107 (30%), Gaps = 14/107 (13%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRC 86 T+ + A+ E++CI C C +CP I + Sbjct: 658 VPNDTAKYEKRGIAVTVPKWEEKKCIQCNTCAMVCPHAVIRPFLLTQEEAKGLTTLKAKG 717 Query: 87 HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 + R I + C C C +CP A+ + A +E Sbjct: 718 KEIKNYQFRIQITPLDCTGCATCVTSCPTKALSMT--YRNAKLDEEE 762 >gi|50841651|ref|YP_054878.1| putative glutamate synthase (NADPH) small subunit [Propionibacterium acnes KPA171202] gi|289424167|ref|ZP_06425950.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes SK187] gi|295129728|ref|YP_003580391.1| Pyridine nucleotide-disulfide oxidoreductase family protein associated with PFOR [Propionibacterium acnes SK137] gi|50839253|gb|AAT81920.1| dehydrogenase, GltD family [Propionibacterium acnes KPA171202] gi|289154864|gb|EFD03546.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes SK187] gi|291375698|gb|ADD99552.1| Pyridine nucleotide-disulfide oxidoreductase family protein associated with PFOR [Propionibacterium acnes SK137] gi|332674564|gb|AEE71380.1| protein YgfK [Propionibacterium acnes 266] Length = 595 Score = 51.3 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 23/62 (37%), Gaps = 9/62 (14%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C C CP AI + RY+ + KC C C + CPV AI Sbjct: 504 NCFECDGCYGSCPEDAI---------IKLGKGHRYEFNYDKCTGCATCFDQCPVHAIEMI 554 Query: 122 PN 123 P Sbjct: 555 PE 556 >gi|314922500|gb|EFS86331.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL001PA1] gi|314965577|gb|EFT09676.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL082PA2] gi|314982739|gb|EFT26831.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL110PA3] gi|315091393|gb|EFT63369.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL110PA4] gi|315094328|gb|EFT66304.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL060PA1] gi|315105052|gb|EFT77028.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL050PA2] gi|327329120|gb|EGE70880.1| pyridine nucleotide-disulfide oxidoreductase family protein [Propionibacterium acnes HL103PA1] Length = 605 Score = 50.9 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 23/62 (37%), Gaps = 9/62 (14%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C C CP AI + RY+ + KC C C + CPV AI Sbjct: 514 NCFECDGCYGSCPEDAI---------IKLGKGHRYEFNYDKCTGCATCFDQCPVHAIEMI 564 Query: 122 PN 123 P Sbjct: 565 PE 566 >gi|313772692|gb|EFS38658.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL074PA1] gi|313811173|gb|EFS48887.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL083PA1] gi|313832174|gb|EFS69888.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL007PA1] gi|313834333|gb|EFS72047.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL056PA1] gi|314974430|gb|EFT18525.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL053PA1] gi|314977381|gb|EFT21476.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL045PA1] gi|314985426|gb|EFT29518.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL005PA1] gi|315097261|gb|EFT69237.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL038PA1] gi|327331224|gb|EGE72963.1| pyridine nucleotide-disulfide oxidoreductase family protein [Propionibacterium acnes HL096PA2] gi|327447403|gb|EGE94057.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL043PA1] gi|327450412|gb|EGE97066.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL043PA2] gi|328759538|gb|EGF73144.1| pyridine nucleotide-disulfide oxidoreductase family protein [Propionibacterium acnes HL099PA1] Length = 605 Score = 50.9 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 23/62 (37%), Gaps = 9/62 (14%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C C CP AI + RY+ + KC C C + CPV AI Sbjct: 514 NCFECDGCYGSCPEDAI---------IKLGKGHRYEFNYDKCTGCATCFDQCPVHAIEMI 564 Query: 122 PN 123 P Sbjct: 565 PE 566 >gi|299143936|ref|ZP_07037016.1| Fe-hydrogenase large subunit family protein [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518421|gb|EFI42160.1| Fe-hydrogenase large subunit family protein [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 498 Score = 50.9 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQ 110 +CI C C+ CP AI + P G+ R +ID +C+ CG C Sbjct: 144 HIDTTKCIKCGRCKETCPYNAIVMYDRPCAAACGVNAIGSDEYGRAEIDHDECVACGRCI 203 Query: 111 EACPVDAI 118 +CP AI Sbjct: 204 ASCPFGAI 211 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 13/68 (19%) Query: 57 PNGEERCIACK--LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C C C +CP A+TIE ID KCI CG C+E CP Sbjct: 113 YYVTDNCRKCMAHPCTNVCPVNAVTIERNRAH-----------IDTTKCIKCGRCKETCP 161 Query: 115 VDAIVEGP 122 +AIV Sbjct: 162 YNAIVMYD 169 >gi|289427411|ref|ZP_06429124.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes J165] gi|289159341|gb|EFD07532.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes J165] Length = 595 Score = 50.9 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 23/62 (37%), Gaps = 9/62 (14%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C C CP AI + RY+ + KC C C + CPV AI Sbjct: 504 NCFECDGCYGSCPEDAI---------IKLGKGHRYEFNYDKCTGCATCFDQCPVHAIEMI 554 Query: 122 PN 123 P Sbjct: 555 PE 556 >gi|302527244|ref|ZP_07279586.1| ferredoxin-NADP+ reductase [Streptomyces sp. AA4] gi|302436139|gb|EFL07955.1| ferredoxin-NADP+ reductase [Streptomyces sp. AA4] Length = 500 Score = 50.9 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 3/59 (5%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C C ++CP I GT + D CI CG C +ACPVDAI Sbjct: 7 QTCCNDATCVSVCPVNCIHPTPDE-PDFGTTEMLYVD--PASCIDCGACADACPVDAIF 62 >gi|242398619|ref|YP_002994043.1| Pyruvate-formate lyase-activating enzyme [Thermococcus sibiricus MM 739] gi|242265012|gb|ACS89694.1| Pyruvate-formate lyase-activating enzyme [Thermococcus sibiricus MM 739] Length = 301 Score = 50.9 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 10/59 (16%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 +CI C C +CP AI+ + ID KC CG+C ACP A+ Sbjct: 54 KCIHCHTCVKVCPENAISFDENE----------TQQIDREKCTGCGVCASACPTSALRL 102 Score = 37.8 bits (86), Expect = 0.55, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 18/57 (31%), Gaps = 1/57 (1%) Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 +G KCI+C C + CP +AI N E R+ Sbjct: 28 GCPLSCWWCHNPEGVSPKPELMYFEFKCIHCHTCVKVCPENAISFDEN-ETQQIDRE 83 >gi|170755508|ref|YP_001782909.1| electron transfer flavoprotein, alpha subunit/FixB family protein [Clostridium botulinum B1 str. Okra] gi|169120720|gb|ACA44556.1| electron transfer flavoprotein, alpha subunit/FixB family protein [Clostridium botulinum B1 str. Okra] gi|322807596|emb|CBZ05171.1| electron transfer flavoprotein, alpha subunit [Clostridium botulinum H04402 065] Length = 398 Score = 50.9 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 12/58 (20%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+C AC +CE CP AI + +G + KC CG C EACP DAI Sbjct: 8 EKCKACGICEKQCPFDAIHVVNGLAEVN------------EKCTICGACVEACPFDAI 53 Score = 37.0 bits (84), Expect = 0.88, Method: Composition-based stats. Identities = 11/22 (50%), Positives = 14/22 (63%) Query: 98 IDMIKCIYCGLCQEACPVDAIV 119 I KC CG+C++ CP DAI Sbjct: 5 IIKEKCKACGICEKQCPFDAIH 26 >gi|167748877|ref|ZP_02421004.1| hypothetical protein ANACAC_03651 [Anaerostipes caccae DSM 14662] gi|317470283|ref|ZP_07929677.1| 4Fe-4S binding domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|167651847|gb|EDR95976.1| hypothetical protein ANACAC_03651 [Anaerostipes caccae DSM 14662] gi|316902256|gb|EFV24176.1| 4Fe-4S binding domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 495 Score = 50.9 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 6/70 (8%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDG------TRRTVRYDIDMIKCIYCGL 108 +E+CI C C+ +CP AI P T R I+ KC+ CG+ Sbjct: 142 YSYIDQEKCIKCGQCQKVCPYSAIHERKRPCEVACGVGAIETDYAGRATINPDKCVSCGM 201 Query: 109 CQEACPVDAI 118 C CP AI Sbjct: 202 CMVNCPFGAI 211 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 5/65 (7%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-----DIDMIKCIYCGLCQEACPVDA 117 C ACK I + + P + + + ID KCI CG CQ+ CP A Sbjct: 105 CNACKDRAFIVGGECQGCMAHPCMEVCPKNAISFVDGYSYIDQEKCIKCGQCQKVCPYSA 164 Query: 118 IVEGP 122 I E Sbjct: 165 IHERK 169 >gi|160933096|ref|ZP_02080485.1| hypothetical protein CLOLEP_01939 [Clostridium leptum DSM 753] gi|156868170|gb|EDO61542.1| hypothetical protein CLOLEP_01939 [Clostridium leptum DSM 753] Length = 546 Score = 50.9 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 25/71 (35%), Gaps = 6/71 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110 +C C C A CP AI+ P + D I +CI CG C Sbjct: 191 YIDPAKCKECGRCAAACPYNAISDTMRPCLRSCPVDAITMDENKQASIKYERCIGCGACT 250 Query: 111 EACPVDAIVEG 121 CP AI + Sbjct: 251 MDCPFGAISDT 261 >gi|186476850|ref|YP_001858320.1| ferredoxin [Burkholderia phymatum STM815] gi|184193309|gb|ACC71274.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia phymatum STM815] Length = 291 Score = 50.9 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 24/99 (24%), Gaps = 18/99 (18%) Query: 24 LRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG 83 L P E CI C LC CP AI Sbjct: 56 LAKLLGKPVIPLNPENGVERPRP--------VAFIDENLCIGCTLCMQACPVDAIVGAPK 107 Query: 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + I C C LC CPVD I P Sbjct: 108 Q----------MHTIVAELCTGCDLCVPPCPVDCIAMIP 136 >gi|320353468|ref|YP_004194807.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Desulfobulbus propionicus DSM 2032] gi|320121970|gb|ADW17516.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Desulfobulbus propionicus DSM 2032] Length = 1126 Score = 50.9 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 6/59 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 ++ C C C +C A+T+++ ID C CG C CP A Sbjct: 1048 DDQLCRGCGRCANVCLYHAVTLQANTVGGW------HAHIDEALCKGCGNCLSVCPTGA 1100 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 10/19 (52%), Positives = 12/19 (63%) Query: 98 IDMIKCIYCGLCQEACPVD 116 ID +C CG C ACPV+ Sbjct: 106 IDTDRCTLCGKCVAACPVN 124 >gi|291537778|emb|CBL10889.1| 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family [Roseburia intestinalis XB6B4] Length = 373 Score = 50.9 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 5/96 (5%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 ++RCI C LC++ CP + + P + G V +D C C C + CP A+V Sbjct: 265 QDRCINCGLCDSACPD--MVFQFAPGTYKGKEAMVNQGLDYRHCKGCLRCVDVCPTHALV 322 Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRN 155 + ++ + + LL + R++ + Sbjct: 323 KAEEKDYPDKPHS---MPDQDLLPDSVRYQKTGANS 355 >gi|293401255|ref|ZP_06645399.1| putative [Fe] hydrogenase, large subunit HymC [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305381|gb|EFE46626.1| putative [Fe] hydrogenase, large subunit HymC [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 553 Score = 50.9 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 38/114 (33%), Gaps = 21/114 (18%) Query: 12 FLKEFVGAFFLCLRYFFK-AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70 + E + + K + P E +P R +L CI C C+ Sbjct: 1 MILELRIILKIGGSFMSKHENVDVRVPVE--DNNPAIRRIESL---------CIRCGQCK 49 Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 +C G + D CI+CG C CP +A+VE ++ Sbjct: 50 EVC---------KKEISVGHHYDLLKTKDTAICIHCGQCVNVCPTNALVERHDW 94 >gi|255028983|ref|ZP_05300934.1| hypothetical protein LmonL_07101 [Listeria monocytogenes LO28] Length = 608 Score = 50.9 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 3/85 (3%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E+ + + + Y ++CI C C C + R + D Sbjct: 124 ERPYREKGYLNDFSHPFYRYDPDQCILCGRCVEACQQVQVNETLSIDWERSQPRVIWDDD 183 Query: 99 DMIK---CIYCGLCQEACPVDAIVE 120 C+ CGLC CP +A++E Sbjct: 184 RPANLSSCVSCGLCATVCPCNALME 208 Score = 38.9 bits (89), Expect = 0.24, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 9/69 (13%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCI 104 R N C C C+ + + +E R + Y D +CI Sbjct: 90 RILENHLLYCTVCDNNNGNCKVHNTTELLGVEKQERPYREKGYLNDFSHPFYRYDPDQCI 149 Query: 105 YCGLCQEAC 113 CG C EAC Sbjct: 150 LCGRCVEAC 158 >gi|229584184|ref|YP_002842685.1| thiamine pyrophosphate protein domain protein TPP-binding [Sulfolobus islandicus M.16.27] gi|228019233|gb|ACP54640.1| thiamine pyrophosphate protein domain protein TPP-binding [Sulfolobus islandicus M.16.27] Length = 612 Score = 50.9 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 23/71 (32%), Gaps = 10/71 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L + E+C C +C AI + ID CI CG C Sbjct: 541 LPKAIVDLEKCTGCSICYDYFTCPAIIPRKDKKAE----------IDNYTCIGCGACIPV 590 Query: 113 CPVDAIVEGPN 123 CP AI N Sbjct: 591 CPFKAISLKGN 601 >gi|168183587|ref|ZP_02618251.1| electron transfer flavoprotein, alpha subunit/FixB family [Clostridium botulinum Bf] gi|237796726|ref|YP_002864278.1| electron transfer flavoprotein subunit alpha/FixB family protein [Clostridium botulinum Ba4 str. 657] gi|182673296|gb|EDT85257.1| electron transfer flavoprotein, alpha subunit/FixB family [Clostridium botulinum Bf] gi|229261514|gb|ACQ52547.1| electron transfer flavoprotein, alpha subunit/FixB family protein [Clostridium botulinum Ba4 str. 657] Length = 398 Score = 50.9 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 12/58 (20%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+C AC +CE CP AI + +G + KC CG C EACP DAI Sbjct: 8 EKCKACGICEKQCPFDAIHVVNGLAEVN------------EKCTICGACVEACPFDAI 53 Score = 37.0 bits (84), Expect = 0.88, Method: Composition-based stats. Identities = 11/22 (50%), Positives = 14/22 (63%) Query: 98 IDMIKCIYCGLCQEACPVDAIV 119 I KC CG+C++ CP DAI Sbjct: 5 IIKEKCKACGICEKQCPFDAIH 26 >gi|167392731|ref|XP_001740273.1| hypothetical protein [Entamoeba dispar SAW760] gi|165895662|gb|EDR23298.1| hypothetical protein, conserved [Entamoeba dispar SAW760] Length = 504 Score = 50.9 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 25/66 (37%), Gaps = 6/66 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV------RYDIDMIKCIYCGLCQEA 112 + CI C C CP AI +S P + ID KCI CG C A Sbjct: 147 NQNDCIKCGRCFKFCPYGAIIHKSIPCVKACPCGAMLDSPEGVKTIDFEKCINCGGCMRA 206 Query: 113 CPVDAI 118 CP I Sbjct: 207 CPFGTI 212 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 24/67 (35%), Gaps = 6/67 (8%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEAC 113 ++ C C S P + ++ + + I+ CI CG C + C Sbjct: 102 QKGCNKCHFNGYFVTQSCEGCTSRPCSVNCPKKCISFGEDGRALINQNDCIKCGRCFKFC 161 Query: 114 PVDAIVE 120 P AI+ Sbjct: 162 PYGAIIH 168 >gi|153938285|ref|YP_001392631.1| electron transfer flavoprotein, alpha subunit/FixB family protein [Clostridium botulinum F str. Langeland] gi|152934181|gb|ABS39679.1| electron transfer flavoprotein, alpha subunit/FixB family protein [Clostridium botulinum F str. Langeland] gi|295320617|gb|ADG00995.1| electron transfer flavoprotein, alpha subunit/FixB family protein [Clostridium botulinum F str. 230613] Length = 398 Score = 50.9 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 12/58 (20%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+C AC +CE CP AI + +G + KC CG C EACP DAI Sbjct: 8 EKCKACGICEKQCPFDAIHVVNGLAEVN------------EKCTICGACVEACPFDAI 53 Score = 37.0 bits (84), Expect = 0.88, Method: Composition-based stats. Identities = 11/22 (50%), Positives = 14/22 (63%) Query: 98 IDMIKCIYCGLCQEACPVDAIV 119 I KC CG+C++ CP DAI Sbjct: 5 IIKEKCKACGICEKQCPFDAIH 26 >gi|158522840|ref|YP_001530710.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfococcus oleovorans Hxd3] gi|158511666|gb|ABW68633.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus oleovorans Hxd3] Length = 427 Score = 50.9 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 28/101 (27%), Positives = 38/101 (37%), Gaps = 8/101 (7%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T ++P G + + A + + E CI C C ICPA+ G Sbjct: 319 YTESHP--VGPDTDMIFVQGADQIFDVSENSCINCGDCVRICPARVPVNVLIRYLQAGEY 376 Query: 92 RTVRYDIDMIKCIYCGLCQEACP-----VDAIVEGPNFEFA 127 D++ CI CGLC CP I G +EFA Sbjct: 377 GEAVDSHDLLSCIDCGLCSCVCPARIPIFQYIQLGK-YEFA 416 >gi|91780908|ref|YP_556115.1| benzoyl-CoA oxygenase, component A [Burkholderia xenovorans LB400] gi|91693568|gb|ABE36765.1| benzoyl-CoA oxygenase, component A [Burkholderia xenovorans LB400] Length = 414 Score = 50.9 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 11/68 (16%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 LR++ E CI C CE CP AIT + Y + C C C Sbjct: 8 EVLRQHLIDPEICIRCNTCEETCPIDAITHDDN-----------NYVVKADVCNGCMACV 56 Query: 111 EACPVDAI 118 CP AI Sbjct: 57 SPCPTGAI 64 Score = 37.0 bits (84), Expect = 0.86, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 17/40 (42%) Query: 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 ++ ID CI C C+E CP+DAI N Sbjct: 1 MNAPVPIEVLRQHLIDPEICIRCNTCEETCPIDAITHDDN 40 >gi|319938422|ref|ZP_08012816.1| Fe-hydrogenase large subunit family protein [Coprobacillus sp. 29_1] gi|319806338|gb|EFW03005.1| Fe-hydrogenase large subunit family protein [Coprobacillus sp. 29_1] Length = 502 Score = 50.9 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 6/66 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQEA 112 +E+CI C LC CP AI P DID KC+ CG+C Sbjct: 145 DQEKCIKCGLCIKNCPYGAIMKMERPCAKACGMDAIQTDEHGHADIDYDKCVSCGMCLVN 204 Query: 113 CPVDAI 118 CP AI Sbjct: 205 CPFGAI 210 Score = 40.9 bits (94), Expect = 0.056, Method: Composition-based stats. Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 13/59 (22%) Query: 63 CIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 C C C+ +CP AI I +G R ID KCI CGLC + CP AI+ Sbjct: 118 CQGCLAHPCKEVCPKGAIDIING-----------RSIIDQEKCIKCGLCIKNCPYGAIM 165 >gi|284997007|ref|YP_003418774.1| thiamine pyrophosphate enzyme domain protein TPP-binding protein [Sulfolobus islandicus L.D.8.5] gi|284444902|gb|ADB86404.1| thiamine pyrophosphate enzyme domain protein TPP-binding protein [Sulfolobus islandicus L.D.8.5] Length = 612 Score = 50.9 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 23/71 (32%), Gaps = 10/71 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L + E+C C +C AI + ID CI CG C Sbjct: 541 LPKAIVDLEKCTGCSICYDYFTCPAIIPRKDKKAE----------IDNYTCIGCGACIPV 590 Query: 113 CPVDAIVEGPN 123 CP AI N Sbjct: 591 CPFKAISLKGN 601 >gi|257866189|ref|ZP_05645842.1| respiratory-chain NADH dehydrogenase 51 kDa subunit [Enterococcus casseliflavus EC30] gi|257872520|ref|ZP_05652173.1| respiratory-chain NADH dehydrogenase 51 kDa subunit [Enterococcus casseliflavus EC10] gi|257800123|gb|EEV29175.1| respiratory-chain NADH dehydrogenase 51 kDa subunit [Enterococcus casseliflavus EC30] gi|257806684|gb|EEV35506.1| respiratory-chain NADH dehydrogenase 51 kDa subunit [Enterococcus casseliflavus EC10] Length = 445 Score = 50.9 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 36/109 (33%), Gaps = 10/109 (9%) Query: 13 LKEFVGA-------FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 L +F G L K+ T+ P KG S + + E CI Sbjct: 313 LIDFAGGFQGAPSKLILGGPMMGKSVKTLKVPVTKG--SNGIVVFNEETDWLYAENPCIR 370 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 C C CP + + +E G ++ CI CG C CP Sbjct: 371 CNKCVEACPMRLMPMEIDQFYRAGD-YQKCEELLAEACINCGACTFVCP 418 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 4/41 (9%) Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLN 143 CI C C EACP+ + E R Y E LL Sbjct: 368 CIRCNKCVEACPMRLMPM----EIDQFYRAGDYQKCEELLA 404 >gi|313764837|gb|EFS36201.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL013PA1] gi|313792724|gb|EFS40805.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL110PA1] gi|313803388|gb|EFS44570.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL110PA2] gi|313807034|gb|EFS45532.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL087PA2] gi|313814047|gb|EFS51761.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL025PA1] gi|313815601|gb|EFS53315.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL059PA1] gi|313817819|gb|EFS55533.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL046PA2] gi|313821355|gb|EFS59069.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL036PA1] gi|313824704|gb|EFS62418.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL036PA2] gi|313826368|gb|EFS64082.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL063PA1] gi|313828941|gb|EFS66655.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL063PA2] gi|313839448|gb|EFS77162.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL086PA1] gi|314916399|gb|EFS80230.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL005PA4] gi|314917239|gb|EFS81070.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL050PA1] gi|314921614|gb|EFS85445.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL050PA3] gi|314926390|gb|EFS90221.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL036PA3] gi|314930738|gb|EFS94569.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL067PA1] gi|314955142|gb|EFS99547.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL027PA1] gi|314959339|gb|EFT03441.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL002PA1] gi|314961511|gb|EFT05612.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL002PA2] gi|314964098|gb|EFT08198.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL082PA1] gi|314969207|gb|EFT13305.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL037PA1] gi|314980076|gb|EFT24170.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL072PA2] gi|314986930|gb|EFT31022.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL005PA2] gi|314990577|gb|EFT34668.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL005PA3] gi|315078796|gb|EFT50818.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL053PA2] gi|315081729|gb|EFT53705.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL078PA1] gi|315082955|gb|EFT54931.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL027PA2] gi|315086475|gb|EFT58451.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL002PA3] gi|315088189|gb|EFT60165.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL072PA1] gi|315099589|gb|EFT71565.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL059PA2] gi|315102180|gb|EFT74156.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL046PA1] gi|315107545|gb|EFT79521.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL030PA1] gi|315109948|gb|EFT81924.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL030PA2] gi|327333850|gb|EGE75567.1| pyridine nucleotide-disulfide oxidoreductase family protein [Propionibacterium acnes HL096PA3] gi|327334733|gb|EGE76444.1| pyridine nucleotide-disulfide oxidoreductase family protein [Propionibacterium acnes HL097PA1] gi|327444681|gb|EGE91335.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL013PA2] gi|327454431|gb|EGF01086.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL087PA3] gi|327456498|gb|EGF03153.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL083PA2] gi|327457233|gb|EGF03888.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL092PA1] gi|328756191|gb|EGF69807.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL087PA1] gi|328758186|gb|EGF71802.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL020PA1] gi|328758573|gb|EGF72189.1| tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Propionibacterium acnes HL025PA2] Length = 605 Score = 50.9 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 23/62 (37%), Gaps = 9/62 (14%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C C CP AI + RY+ + KC C C + CPV AI Sbjct: 514 NCFECDGCYGSCPEDAI---------IKLGKGHRYEFNYDKCTGCATCFDQCPVHAIEMI 564 Query: 122 PN 123 P Sbjct: 565 PE 566 >gi|302391756|ref|YP_003827576.1| anaerobic carbon-monoxide dehydrogenase diaphorase component flavoprotein [Acetohalobium arabaticum DSM 5501] gi|302203833|gb|ADL12511.1| anaerobic carbon-monoxide dehydrogenase diaphorase component flavoprotein [Acetohalobium arabaticum DSM 5501] Length = 613 Score = 50.9 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 36/96 (37%), Gaps = 16/96 (16%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 L+Y F+ + + K +L Y + C C C CP AI+ E+ Sbjct: 531 TLKY-FRDEYKAHVKDNKCPAGVC----KSLVEYQI-TDDCQGCTKCVDECPGDAISGEA 584 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + + ID CI CG C CP DAI Sbjct: 585 KEQ----------HTIDEDDCIKCGSCINVCPFDAI 610 >gi|257066578|ref|YP_003152834.1| NADH dehydrogenase (quinone) [Anaerococcus prevotii DSM 20548] gi|256798458|gb|ACV29113.1| NADH dehydrogenase (quinone) [Anaerococcus prevotii DSM 20548] Length = 526 Score = 50.9 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 10/60 (16%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E CI C C+ +CP +AI E+ + I+ KCI CG C++ CP++AI Sbjct: 476 EDCIGCGKCKRLCPNEAIAGEARKKHE----------INQDKCIKCGQCKDNCPINAIAL 525 Score = 37.4 bits (85), Expect = 0.75, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 9/66 (13%) Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134 +A E+ + Y I CI CG C+ CP +AI A E R++ Sbjct: 451 YEAHVNENKTCPSKRCISLLNYTIGED-CIGCGKCKRLCPNEAI--------AGEARKKH 501 Query: 135 YYDKER 140 ++++ Sbjct: 502 EINQDK 507 >gi|170078052|ref|YP_001734690.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Synechococcus sp. PCC 7002] gi|169885721|gb|ACA99434.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Synechococcus sp. PCC 7002] Length = 1178 Score = 50.9 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 30/121 (24%), Gaps = 24/121 (19%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPR 85 TS + A E CI C C +CP A Sbjct: 667 PTGTSKWEKRNVAQFIPEWDPEVCIQCGKCVMVCPHATIRAKVYEPNLLGNAPESFKSID 726 Query: 86 CHDGTRRTVRYDID--MIKCIYCGLCQEACP--------VDAIVEGPNFEFATETRQELY 135 D ++ I C CG+C + CP AI + R Sbjct: 727 AKDKNFSGQKFTIQVAPEDCTGCGVCVDVCPAKNKAQPSKKAINMVEQLPLREQERTNWD 786 Query: 136 Y 136 Y Sbjct: 787 Y 787 Score = 38.5 bits (88), Expect = 0.29, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 23/102 (22%), Gaps = 12/102 (11%) Query: 23 CLRYFFK------AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 L F+ P + R A G+ ++C C+ P Sbjct: 610 TLANLFEVNVGEANSPIRKPPAVSPNAPDFMRNVQAPMLIKEGDRLPVSCLPCDGTYPTG 669 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E I CG C CP I Sbjct: 670 TSKWEKRNVAQFIPEWDPEVCIQ------CGKCVMVCPHATI 705 >gi|170760160|ref|YP_001788602.1| electron transfer flavoprotein, alpha subunit/FixB family protein [Clostridium botulinum A3 str. Loch Maree] gi|169407149|gb|ACA55560.1| electron transfer flavoprotein, alpha subunit/FixB family protein [Clostridium botulinum A3 str. Loch Maree] Length = 398 Score = 50.9 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 12/58 (20%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+C AC +CE CP AI + +G + KC CG C EACP DAI Sbjct: 8 EKCKACGICEKQCPFDAIHVVNGLAEVN------------EKCTICGACVEACPFDAI 53 Score = 37.0 bits (84), Expect = 0.88, Method: Composition-based stats. Identities = 11/22 (50%), Positives = 14/22 (63%) Query: 98 IDMIKCIYCGLCQEACPVDAIV 119 I KC CG+C++ CP DAI Sbjct: 5 IIKEKCKACGICEKQCPFDAIH 26 >gi|77460730|ref|YP_350237.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas fluorescens Pf0-1] gi|77384733|gb|ABA76246.1| putative electron transpor-related protein [Pseudomonas fluorescens Pf0-1] Length = 404 Score = 50.9 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 28/78 (35%), Gaps = 10/78 (12%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 RG + E CI C C CP AI + + + + + +C Sbjct: 63 DISRGSAPPQVAYIREAECIGCTKCIQACPIDAIVGAAK----------LMHTVIIDECT 112 Query: 105 YCGLCQEACPVDAIVEGP 122 C LC CPVD I P Sbjct: 113 GCDLCVAPCPVDCIEMHP 130 >gi|313667518|ref|YP_004047802.1| ferredoxin [Neisseria lactamica ST-640] gi|313004980|emb|CBN86408.1| putative ferredoxin [Neisseria lactamica 020-06] Length = 279 Score = 50.9 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 24/64 (37%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CPA AI + + +C CGLC CPVD I Sbjct: 75 DETACIGCTACIRACPADAIMGAGK----------FMHTVIADECTGCGLCVAPCPVDCI 124 Query: 119 VEGP 122 P Sbjct: 125 HMQP 128 Score = 34.7 bits (78), Expect = 4.4, Method: Composition-based stats. Identities = 12/23 (52%), Positives = 13/23 (56%) Query: 97 DIDMIKCIYCGLCQEACPVDAIV 119 ID CI C C ACP DAI+ Sbjct: 73 RIDETACIGCTACIRACPADAIM 95 >gi|89902050|ref|YP_524521.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodoferax ferrireducens T118] gi|89346787|gb|ABD70990.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Rhodoferax ferrireducens T118] Length = 254 Score = 50.9 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 42/102 (41%), Gaps = 12/102 (11%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 T P + +T FRG+ + + C+ C +CP++A+ +E Sbjct: 13 TQYIPDLRAATPGGFRGKPVISDAACADG----CQACVQVCPSRAVRLEPTQPDP----- 63 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134 ID+ +C+ CG C+ CP + + + +R+ L Sbjct: 64 ---VHIDLGRCVLCGDCEPVCPSRKLSFNNDVKLCATSREAL 102 >gi|56122436|gb|AAV74342.1| pyruvate:ferredoxin oxidoreductase A-like protein [Trichomonas vaginalis] Length = 1157 Score = 50.9 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 33/107 (30%), Gaps = 14/107 (13%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRC 86 T+ + A+ E++CI C C +CP I + Sbjct: 658 VPNDTAKYEKRGIAVTVPKWEEKKCIQCNTCAMVCPHAVIRPFLLTQEEAKGLTTLKAKG 717 Query: 87 HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 + R I + C C C +CP A+ + A +E Sbjct: 718 KEIKNYQFRIQITPLDCTGCATCVTSCPTKALSMT--YRNAKLDEEE 762 >gi|300716526|ref|YP_003741329.1| Electron transport complex protein [Erwinia billingiae Eb661] gi|299062362|emb|CAX59479.1| Electron transport complex protein [Erwinia billingiae Eb661] Length = 707 Score = 50.9 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 45/131 (34%), Gaps = 4/131 (3%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 T++ P K + + + E+ CI C C CPA A+ + G Sbjct: 348 TLDVPVVKITNCILAPAANEM-GDNEAEQSCIRCSACADACPA-ALLPQQLYWYSRGKDH 405 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEI 152 + ++ CI CG C CP I + + + + ER R+E+ Sbjct: 406 DKAREHNIADCIECGACAYVCP-SNIPLVQYYRQEKAEIRAIDLEAERNAQAKARFEAR- 463 Query: 153 VRNIVTDSPYR 163 + + R Sbjct: 464 QERLEREKLAR 474 >gi|320012396|gb|ADW07246.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Streptomyces flavogriseus ATCC 33331] Length = 556 Score = 50.9 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 3/59 (5%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C + C ++CP I RT ID CI CG C +ACPV+A+ Sbjct: 7 QTCCSDATCVSVCPVNCIHPTPEEPD---FGRTEMLYIDPRSCIDCGACADACPVEAVF 62 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 13/34 (38%), Gaps = 2/34 (5%) Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 C C CPV+ I P E R E+ Y Sbjct: 9 CCSDATCVSVCPVNCIHPTP--EEPDFGRTEMLY 40 >gi|224371568|ref|YP_002605732.1| iron-sulfur cluster binding protein [Desulfobacterium autotrophicum HRM2] gi|223694285|gb|ACN17568.1| iron-sulfur cluster binding protein [Desulfobacterium autotrophicum HRM2] Length = 375 Score = 50.9 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 11/62 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C +C+ CP AI+I + R +D+ +CI CGLC CP AI Sbjct: 272 DPGLCTGCGICKKRCPMDAISI-----------KNKRAVLDLDRCIGCGLCVSTCPEKAI 320 Query: 119 VE 120 Sbjct: 321 HL 322 >gi|218780440|ref|YP_002431758.1| formate dehydrogenase, alpha subunit [Desulfatibacillum alkenivorans AK-01] gi|218761824|gb|ACL04290.1| Cytoplasmic formate dehydrogenase, alpha subunit [Desulfatibacillum alkenivorans AK-01] Length = 918 Score = 50.9 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 3/83 (3%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 + + + A + RCI C CEA C + + + Y + Sbjct: 154 PSDKEYPKDLANPFFVRDYSRCIKCGRCEAACNE---VQVNLAIDWNRNDKDASYPLANE 210 Query: 102 KCIYCGLCQEACPVDAIVEGPNF 124 C+YCG C + CPV A+VE Sbjct: 211 FCVYCGECVQTCPVGALVEKDVH 233 >gi|148381229|ref|YP_001255770.1| electron transfer flavoprotein alpha-subunit [Clostridium botulinum A str. ATCC 3502] gi|153933291|ref|YP_001385604.1| electron transfer flavoprotein, alpha subunit/FixB family protein [Clostridium botulinum A str. ATCC 19397] gi|153936895|ref|YP_001389010.1| electron transfer flavoprotein, alpha subunit/FixB family protein [Clostridium botulinum A str. Hall] gi|148290713|emb|CAL84844.1| electron transfer flavoprotein alpha-subunit [Clostridium botulinum A str. ATCC 3502] gi|152929335|gb|ABS34835.1| electron transfer flavoprotein, alpha subunit/FixB family protein [Clostridium botulinum A str. ATCC 19397] gi|152932809|gb|ABS38308.1| electron transfer flavoprotein, alpha subunit/FixB family protein [Clostridium botulinum A str. Hall] Length = 398 Score = 50.9 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 12/58 (20%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+C AC +CE CP AI + +G + KC CG C EACP DAI Sbjct: 8 EKCKACGICEKQCPFDAIHVVNGLAEVN------------EKCTICGACVEACPFDAI 53 Score = 37.0 bits (84), Expect = 0.90, Method: Composition-based stats. Identities = 11/22 (50%), Positives = 14/22 (63%) Query: 98 IDMIKCIYCGLCQEACPVDAIV 119 I KC CG+C++ CP DAI Sbjct: 5 IIKEKCKACGICEKQCPFDAIH 26 >gi|294340395|emb|CAZ88776.1| Putative NADH ubiquinone oxidoreductase, 20 kDa subunit [Thiomonas sp. 3As] Length = 273 Score = 50.9 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 38/117 (32%), Gaps = 18/117 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA----CKLCEAICPAQAI 78 K + T +P G E L RC + C C A+CPA AI Sbjct: 5 TWFSLQKGRATTPWPERPGP----DGQEGVLGLPRFDAARCSSEQSGCSDCVAVCPASAI 60 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 +D +C+ C LC E CP A ++ F + +L Sbjct: 61 KRSEAGAV----------QLDYARCVGCQLCTEVCPESAFSVSHDWAFGVRDKSDLL 107 >gi|289578863|ref|YP_003477490.1| cobyrinic acid ac-diamide synthase [Thermoanaerobacter italicus Ab9] gi|297545078|ref|YP_003677380.1| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289528576|gb|ADD02928.1| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter italicus Ab9] gi|296842853|gb|ADH61369.1| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 291 Score = 50.9 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 42/108 (38%), Gaps = 22/108 (20%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE-------ERCIACKLCEAICPA 75 L K K + E + + +GE ++ G+ ++CI C LCE +C Sbjct: 21 TLSTIVKNKIMADCDVEAPNLNIVLQGEIIEKQDFYGKETAVIDKDKCIECGLCEELCRF 80 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 AI+ ++++ C CGLC CPV+AI Sbjct: 81 GAISN---------------FEVNPYYCEGCGLCMYKCPVEAIKLVEE 113 >gi|157377554|ref|YP_001476154.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Shewanella sediminis HAW-EB3] gi|157319928|gb|ABV39026.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella sediminis HAW-EB3] Length = 563 Score = 50.9 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 30/82 (36%), Gaps = 9/82 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++C C C + CP QA+T C+ CGLC+ ACP I Sbjct: 429 NSDKCTLCLSCVSTCPTQALTDGGDKPALH---------FVEQDCVQCGLCESACPEKVI 479 Query: 119 VEGPNFEFATETRQELYYDKER 140 P F RQ+ KE Sbjct: 480 SLTPQMNFDKAQRQQRQTLKEE 501 Score = 38.9 bits (89), Expect = 0.26, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 17/53 (32%), Gaps = 11/53 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C CPA AI ID C G C ACP AI Sbjct: 205 CNRCLNFCPADAIQSID-----------KMITIDPYLCHGAGSCTNACPTGAI 246 >gi|119872287|ref|YP_930294.1| thiamine pyrophosphate binding domain-containing protein [Pyrobaculum islandicum DSM 4184] gi|119673695|gb|ABL87951.1| thiamine pyrophosphate enzyme domain protein TPP-binding [Pyrobaculum islandicum DSM 4184] Length = 592 Score = 50.9 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 10/73 (13%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R + +Y E+C +C LC + AI+ + +D C+ CG Sbjct: 516 RLGVQIPKYQVDLEKCKSCGLCYNLLKCSAISKRPDGKA----------YVDPALCVGCG 565 Query: 108 LCQEACPVDAIVE 120 +C E CP +A Sbjct: 566 VCAEVCPFNAFKL 578 >gi|94498904|ref|ZP_01305442.1| electron transport complex protein RnfC [Oceanobacter sp. RED65] gi|94428536|gb|EAT13508.1| electron transport complex protein RnfC [Oceanobacter sp. RED65] Length = 727 Score = 50.9 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 36/94 (38%), Gaps = 2/94 (2%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C +C CPAQ + + + ++ CI CG C CP I Sbjct: 375 QPCIRCGMCTEACPAQ-LLPQQLYWFSKSSNLEQAEQHNIADCIECGACAYVCP-SNIPL 432 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVR 154 + ++ DK + +R+E+ + R Sbjct: 433 VQYYRHTKGEIKQAQADKIKSDRAKERFEARLAR 466 Score = 34.7 bits (78), Expect = 4.5, Method: Composition-based stats. Identities = 9/16 (56%), Positives = 10/16 (62%) Query: 99 DMIKCIYCGLCQEACP 114 CI CG+C EACP Sbjct: 373 MEQPCIRCGMCTEACP 388 >gi|17547095|ref|NP_520497.1| ferredoxin protein [Ralstonia solanacearum GMI1000] gi|17429396|emb|CAD16083.1| putative ferredoxin protein [Ralstonia solanacearum GMI1000] Length = 719 Score = 50.9 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 9/79 (11%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RC C C + CP+QA+ + + C+ CGLC CP DAI Sbjct: 587 DRARCTLCMACVSACPSQALRDAAE---------RPVLSMIERNCVQCGLCDTTCPEDAI 637 Query: 119 VEGPNFEFATETRQELYYD 137 P + + RQ + + Sbjct: 638 ALVPRLNLSADARQPVVLN 656 Score = 41.2 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 7/55 (12%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C +C A AIT + + C+ CG C ACP A+ Sbjct: 334 VGCDACVRVCSAAAITSQWKDGRGSVH-------VTPNLCVGCGACTTACPTGAL 381 Score = 37.8 bits (86), Expect = 0.55, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 19/48 (39%) Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 A SG + R ID+ +C C C +ACP DAI Sbjct: 179 WPIQAGERVQVSGWLGAFDVQWQSRNPIDLDRCTRCNACIDACPEDAI 226 >gi|310778436|ref|YP_003966769.1| NAD-dependent formate dehydrogenase catalytic subunit [Ilyobacter polytropus DSM 2926] gi|309747759|gb|ADO82421.1| NAD-dependent formate dehydrogenase catalytic subunit [Ilyobacter polytropus DSM 2926] Length = 890 Score = 50.9 bits (120), Expect = 5e-05, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 1/66 (1%) Query: 55 RYPNGEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + +CI+C C +C Q + + ID C +CG C C Sbjct: 136 FFTIDSNKCISCGKCVKVCETLQCNNVLKLDPVTKKVLVSEGVKIDESNCAFCGNCVSVC 195 Query: 114 PVDAIV 119 PV A+ Sbjct: 196 PVGALQ 201 >gi|242399261|ref|YP_002994685.1| Membrane-bound hydrogenase MBH 2, subunit Mbh2N (hydrogenase subunit) [Thermococcus sibiricus MM 739] gi|242265654|gb|ACS90336.1| Membrane-bound hydrogenase MBH 2, subunit Mbh2N (hydrogenase subunit) [Thermococcus sibiricus MM 739] Length = 152 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 24/102 (23%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 FRG+ ERCI C+LC +CPA A+ R + Sbjct: 48 PVPIPEDFRGKI-----HYDPERCIGCRLCITVCPANAMEWIPELR---------KIRHY 93 Query: 100 MIKCIYCGLCQEACP----------VDAIVEGPNFEFATETR 131 + +C++C LC + CP V A+ +F A + Sbjct: 94 VSRCMFCALCVDVCPGKKFPGEEKSVKALSISEDFLLADYDK 135 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 15/41 (36%) Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 P + D +CI C LC CP +A+ P Sbjct: 46 HPPVPIPEDFRGKIHYDPERCIGCRLCITVCPANAMEWIPE 86 >gi|224371231|ref|YP_002605395.1| ferredoxin (iron-sulfur cluster-binding protein) [Desulfobacterium autotrophicum HRM2] gi|223693948|gb|ACN17231.1| ferredoxin (iron-sulfur cluster-binding protein) [Desulfobacterium autotrophicum HRM2] Length = 384 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 40/123 (32%), Gaps = 23/123 (18%) Query: 17 VGAFFLCLRYFFKAKTTINYP-FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + F L+ + + + SP+ + + CI C C CP Sbjct: 160 LSGFGGTLKNLGMGCASRKGKLDQHSTVSPKIK-----------RKTCIGCGACVDNCPV 208 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 +AIT+E I+ CI CG C CP ++ N + + Sbjct: 209 KAITLEDDKA-----------TINPEVCIGCGECIIRCPTGSVNIRWNQTIPVFLEKMME 257 Query: 136 YDK 138 Y K Sbjct: 258 YTK 260 >gi|218781349|ref|YP_002432667.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfatibacillum alkenivorans AK-01] gi|218762733|gb|ACL05199.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfatibacillum alkenivorans AK-01] Length = 369 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 11/61 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E+C C CE +CP A +E ID CI CG C CP AI Sbjct: 191 NKEKCTGCGSCEDVCPVGAAKLEDEISI-----------IDAKVCIGCGECMTVCPEKAI 239 Query: 119 V 119 Sbjct: 240 N 240 Score = 40.9 bits (94), Expect = 0.067, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 3/62 (4%) Query: 65 ACKLCEAICPAQAIT---IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 K E AI + P + + ++ KC CG C++ CPV A Sbjct: 154 HFKGHELAGWGGAIKNLAMGCAPAAGKQQQHDLTMKVNKEKCTGCGSCEDVCPVGAAKLE 213 Query: 122 PN 123 Sbjct: 214 DE 215 >gi|229578417|ref|YP_002836815.1| thiamine pyrophosphate protein domain protein TPP-binding [Sulfolobus islandicus Y.G.57.14] gi|229582865|ref|YP_002841264.1| thiamine pyrophosphate protein domain protein TPP-binding [Sulfolobus islandicus Y.N.15.51] gi|228009131|gb|ACP44893.1| thiamine pyrophosphate protein domain protein TPP-binding [Sulfolobus islandicus Y.G.57.14] gi|228013581|gb|ACP49342.1| thiamine pyrophosphate protein domain protein TPP-binding [Sulfolobus islandicus Y.N.15.51] Length = 612 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 22/71 (30%), Gaps = 10/71 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L + E C C +C AI + ID CI CG C Sbjct: 541 LPKAIVDLEICTGCSICYDYFTCPAIIPRKDKKAE----------IDNYTCIGCGACIPV 590 Query: 113 CPVDAIVEGPN 123 CP AI N Sbjct: 591 CPFKAISLKGN 601 >gi|30018775|ref|NP_830406.1| formate dehydrogenase alpha chain [Bacillus cereus ATCC 14579] gi|229126022|ref|ZP_04255045.1| formate dehydrogenase [Bacillus cereus BDRD-Cer4] gi|29894316|gb|AAP07607.1| Formate dehydrogenase alpha chain [Bacillus cereus ATCC 14579] gi|228657447|gb|EEL13262.1| formate dehydrogenase [Bacillus cereus BDRD-Cer4] Length = 978 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + R + Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 + I+ C+ CG C CP +A++E Sbjct: 183 WDNGVSINESSCVSCGQCVTVCPCNALME 211 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|302877304|ref|YP_003845868.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Gallionella capsiferriformans ES-2] gi|302580093|gb|ADL54104.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Gallionella capsiferriformans ES-2] Length = 542 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 21/62 (33%), Gaps = 9/62 (14%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C C +CP A+ + + + C CGLC CP AI Sbjct: 488 NCFECDNCYGVCPDNAVIKLGPGKG---------FQFNYDYCKGCGLCVAECPCGAIAMV 538 Query: 122 PN 123 P Sbjct: 539 PE 540 >gi|269793046|ref|YP_003317950.1| glycyl-radical enzyme activating protein family [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100681|gb|ACZ19668.1| glycyl-radical enzyme activating protein family [Thermanaerovibrio acidaminovorans DSM 6589] Length = 301 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 17/86 (19%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + ERC+ C C CPA AI+ +D +C+ CG+C +ACP D Sbjct: 49 WHFPERCVGCGRCALACPAGAIS------------YGEHLRLDRSRCVRCGMCAQACPAD 96 Query: 117 A-----IVEGPNFEFATETRQELYYD 137 A P A + E++YD Sbjct: 97 AMRLLGWAMTPRELLAQALKDEIFYD 122 Score = 38.9 bits (89), Expect = 0.24, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 21/68 (30%), Gaps = 4/68 (5%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 +RY + I CP + + +C+ CG C AC Sbjct: 10 KRYSIHDGPGIRTTFHLKGCPLRCRWCHNPEGLDFEPSVW----HFPERCVGCGRCALAC 65 Query: 114 PVDAIVEG 121 P AI G Sbjct: 66 PAGAISYG 73 >gi|163794803|ref|ZP_02188773.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [alpha proteobacterium BAL199] gi|159180076|gb|EDP64601.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [alpha proteobacterium BAL199] Length = 676 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 25/92 (27%), Gaps = 13/92 (14%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P E + E C C C + CPA A+ Sbjct: 500 PDEPLPLPIGAPYGRVVV----DTEGCTLCLACVSACPASALQDNPDKPQLL-------- 547 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 C+ CGLC CP I P + A Sbjct: 548 -FQEDACVQCGLCAATCPEKVITLEPRYALAD 578 Score = 38.5 bits (88), Expect = 0.31, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 19/55 (34%), Gaps = 11/55 (20%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C +CPA AI +D C CGLC CP AI Sbjct: 284 TGCTRCLDLCPASAIAPAGD-----------VVSVDPALCGGCGLCAGTCPTSAI 327 >gi|332298988|ref|YP_004440910.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Treponema brennaborense DSM 12168] gi|332182091|gb|AEE17779.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Treponema brennaborense DSM 12168] Length = 1186 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 27/98 (27%), Gaps = 24/98 (24%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ---------------- 76 T FEK + + + CI C C +CP Sbjct: 675 TATTQFEKRAIAEKVPEW--------DPSVCIQCGQCTVVCPHAVIRMKTLSDDAAAKAP 726 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 A + + + V I C CGLC CP Sbjct: 727 AGFKSADLKPKAEAGKKVVLQISTEDCTGCGLCVAVCP 764 Score = 35.5 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 8/21 (38%), Positives = 8/21 (38%) Query: 100 MIKCIYCGLCQEACPVDAIVE 120 CI CG C CP I Sbjct: 694 PSVCIQCGQCTVVCPHAVIRM 714 >gi|327401724|ref|YP_004342563.1| methyl-viologen-reducing hydrogenase subunit delta [Archaeoglobus veneficus SNP6] gi|327317232|gb|AEA47848.1| methyl-viologen-reducing hydrogenase delta subunit [Archaeoglobus veneficus SNP6] Length = 756 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 29/96 (30%), Gaps = 8/96 (8%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA-------ITIESGPRCHDGTRRT 93 + F RCI+C C +CP ++ Sbjct: 221 WKENGNFVARIRKAPQYVDPSRCISCGKCSEVCPVDVENSFDCGMSKRKAIDKEFKLAIP 280 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 Y+I C CG C EACP +AI E E Sbjct: 281 DIYNIVEE-CTKCGECVEACPTNAINLDAEEEIIEE 315 Score = 42.4 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 13/67 (19%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ C AC++CEA CP AI ++ C CGLC ACP +AI Sbjct: 562 DQDLCSACRICEAACPHGAIDVKDFAYVD------------PAFCQGCGLCMAACPSNAI 609 Query: 119 VEGPNFE 125 NFE Sbjct: 610 QLV-NFE 615 >gi|323702453|ref|ZP_08114117.1| Electron transfer flavoprotein alpha/beta-subunit [Desulfotomaculum nigrificans DSM 574] gi|323532592|gb|EGB22467.1| Electron transfer flavoprotein alpha/beta-subunit [Desulfotomaculum nigrificans DSM 574] Length = 448 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 10/66 (15%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 N C+ C+ C CP +A+ I ++ KC+ CG C E CP Sbjct: 1 MAVNVSPACMGCQACITTCPYEALFINDNG----------VCEVIKDKCVECGKCVEVCP 50 Query: 115 VDAIVE 120 V+A+ Sbjct: 51 VEALSL 56 >gi|291542332|emb|CBL15442.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Ruminococcus bromii L2-63] Length = 286 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 40/113 (35%), Gaps = 22/113 (19%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 G + E+ CI C +C C AIT+E G +D KC Sbjct: 147 ENDVGIKGGIKVSWKEDACIGCGVCVKACRQGAITLEDGKIS-----------VDNSKCN 195 Query: 105 YCGLCQEACPVDAIVEGPNFEFA-----------TETRQELYYDKERLLNNGD 146 YCG C +ACP DA + + E +KE+L+ D Sbjct: 196 YCGRCFKACPTDAWNTIHGYIVSFGGLFGNSINKGEKIIPFIENKEKLMEICD 248 >gi|209516646|ref|ZP_03265499.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia sp. H160] gi|209502921|gb|EEA02924.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia sp. H160] Length = 412 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 11/68 (16%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 LR++ E CI C CE CP AIT + Y + C C C Sbjct: 8 EVLRQHLIDPEICIRCNTCEETCPIDAITHDDN-----------NYVVKADVCNGCMACV 56 Query: 111 EACPVDAI 118 CP AI Sbjct: 57 PPCPTGAI 64 Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats. Identities = 13/26 (50%), Positives = 15/26 (57%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPN 123 ID CI C C+E CP+DAI N Sbjct: 15 IDPEICIRCNTCEETCPIDAITHDDN 40 >gi|221069698|ref|ZP_03545803.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Comamonas testosteroni KF-1] gi|220714721|gb|EED70089.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Comamonas testosteroni KF-1] Length = 433 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 11/70 (15%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 L+++ E CI C CEA CP AIT + Y + KC C Sbjct: 8 ENGILKQHLIDPEICIRCNTCEATCPVDAITHDDN-----------NYVVMADKCNGCMD 56 Query: 109 CQEACPVDAI 118 C CP +I Sbjct: 57 CISPCPTGSI 66 Score = 38.2 bits (87), Expect = 0.35, Method: Composition-based stats. Identities = 13/26 (50%), Positives = 14/26 (53%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPN 123 ID CI C C+ CPVDAI N Sbjct: 17 IDPEICIRCNTCEATCPVDAITHDDN 42 >gi|218884497|ref|YP_002428879.1| Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Desulfurococcus kamchatkensis 1221n] gi|218766113|gb|ACL11512.1| Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, delta subunit [Desulfurococcus kamchatkensis 1221n] Length = 93 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 32/95 (33%), Gaps = 11/95 (11%) Query: 30 AKTTINYPFEKGSTSPRFR-GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88 T P + + + G + + +C C CE CP I +E Sbjct: 7 PPKTGQPPLTRPNIGVAGKTGFWRTTKPIVDQSKCTRCYQCEIFCPVNVIRVEPE----- 61 Query: 89 GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 ID C CG+C + CPV+AI Sbjct: 62 -----TGVKIDYDYCKGCGVCADVCPVNAISMVEE 91 >gi|126734228|ref|ZP_01749975.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Roseobacter sp. CCS2] gi|126717094|gb|EBA13958.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Roseobacter sp. CCS2] Length = 643 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 9/82 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C C ++CP+ A+ + C+ CGLC + CP DAI Sbjct: 492 NTDSCTLCLSCVSLCPSGALGDNPDK---------PQLRFQEDACLQCGLCVQICPEDAI 542 Query: 119 VEGPNFEFATETRQELYYDKER 140 P + + ++E Sbjct: 543 TLAPRLDLTDAALNQTVLNEEE 564 Score = 40.9 bits (94), Expect = 0.059, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 11/55 (20%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C +CP AI+ E ID + C CG C CP AI Sbjct: 273 TGCTNCLDLCPTGAISPEGD-----------HVSIDPMICAGCGACSAGCPSGAI 316 >gi|299136918|ref|ZP_07030101.1| formate dehydrogenase, alpha subunit [Acidobacterium sp. MP5ACTX8] gi|298601433|gb|EFI57588.1| formate dehydrogenase, alpha subunit [Acidobacterium sp. MP5ACTX8] Length = 1005 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 3/85 (3%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR--- 95 E+ T + + + Y +CI C C C + + R + Sbjct: 140 ERPFTKKPYEVDMSNPFYRYDPNQCILCGRCVQACQTVQVNETLTIGWELDSPRVLWDGG 199 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVE 120 I C+ CG C CP +A++E Sbjct: 200 MQIGGSSCVSCGHCITVCPCNALME 224 Score = 40.9 bits (94), Expect = 0.067, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 26/83 (31%), Gaps = 9/83 (10%) Query: 48 RGEHALRRYPNGEERCIACKL----CEAICPAQAITIESGPRCHDGTRRTV-----RYDI 98 R E N C C C A A+ +E R V Y Sbjct: 100 RAEAFDVILGNHMLYCTVCDNNNENCTVHNTALAMKVEHQERPFTKKPYEVDMSNPFYRY 159 Query: 99 DMIKCIYCGLCQEACPVDAIVEG 121 D +CI CG C +AC + E Sbjct: 160 DPNQCILCGRCVQACQTVQVNET 182 >gi|168179067|ref|ZP_02613731.1| electron transfer flavoprotein, alpha subunit/FixB family protein [Clostridium botulinum NCTC 2916] gi|182670138|gb|EDT82114.1| electron transfer flavoprotein, alpha subunit/FixB family protein [Clostridium botulinum NCTC 2916] Length = 398 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 12/58 (20%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+C AC +CE CP AI + +G + KC CG C EACP DAI Sbjct: 8 EKCKACGICEKQCPFDAIHVVNGLAEVN------------EKCTICGACVEACPFDAI 53 Score = 37.0 bits (84), Expect = 0.94, Method: Composition-based stats. Identities = 11/22 (50%), Positives = 14/22 (63%) Query: 98 IDMIKCIYCGLCQEACPVDAIV 119 I KC CG+C++ CP DAI Sbjct: 5 IIKEKCKACGICEKQCPFDAIH 26 >gi|11498862|ref|NP_070091.1| iron-sulfur cluster binding protein [Archaeoglobus fulgidus DSM 4304] gi|2649316|gb|AAB89980.1| iron-sulfur cluster binding protein [Archaeoglobus fulgidus DSM 4304] Length = 369 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 10/89 (11%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +CIAC +C CP +A+ + +++ KC+ CG+C CPV+AI Sbjct: 286 DSSKCIACGICMLRCPMKAVKAKINREPA---------NVEAEKCLGCGVCVPTCPVEAI 336 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDR 147 E E L Y +E L + G Sbjct: 337 ELVEREEL-QEWPDHLTYYQELLADRGKD 364 Score = 37.0 bits (84), Expect = 0.97, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 4/65 (6%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C C A A I + +D KCI CG+C CP+ A+ Sbjct: 254 CNCCSDCCAFFRA----IHEAGHPKTIAHSSYVASVDSSKCIACGICMLRCPMKAVKAKI 309 Query: 123 NFEFA 127 N E A Sbjct: 310 NREPA 314 >gi|229110994|ref|ZP_04240554.1| formate dehydrogenase [Bacillus cereus Rock1-15] gi|228672478|gb|EEL27762.1| formate dehydrogenase [Bacillus cereus Rock1-15] Length = 975 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 7/92 (7%) Query: 33 TINYPFE-KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 YP+E K S Y +CIAC C +C + Sbjct: 119 HQKYPYEPKVDVSEVDMTHP---FYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERP 175 Query: 92 RTVR---YDIDMIKCIYCGLCQEACPVDAIVE 120 R + +I+ C+ CG C CP +A++E Sbjct: 176 RVIWDEGVNINDSSCVSCGQCVTICPCNALME 207 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 87 RLLENHLLYCTVCDNNNGNCKLHNTAELMGIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 146 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 147 CIACGQCVEVC 157 >gi|187932967|ref|YP_001886497.1| iron hydrogenase, electron-transfer subunit [Clostridium botulinum B str. Eklund 17B] gi|187721120|gb|ACD22341.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum B str. Eklund 17B] Length = 626 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 10/68 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L Y +++C C C +CPA AIT E Y ID KCI CG C + Sbjct: 568 LMSYEIDKDKCKGCSKCARMCPAGAITGEIKKP----------YTIDQSKCIKCGACMDG 617 Query: 113 CPVDAIVE 120 C AI Sbjct: 618 CAFKAIQL 625 >gi|182417446|ref|ZP_02948773.1| nitroreductase family protein fused to ferredoxin domain [Clostridium butyricum 5521] gi|237665843|ref|ZP_04525831.1| 4Fe-4S binding domain protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378615|gb|EDT76142.1| nitroreductase family protein fused to ferredoxin domain [Clostridium butyricum 5521] gi|237658790|gb|EEP56342.1| nitroreductase family protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 278 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 42/107 (39%), Gaps = 16/107 (14%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + +++CI C C CP + I++ +I+ C+ CG C CP Sbjct: 1 MFKVNKDKCIGCSQCVKDCPVRVISLIDNKA-----------EINNNNCMKCGHCIAICP 49 Query: 115 VDAIVEGPNF---EFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158 V+A+ ++ E + + D + LL N ++ + + Sbjct: 50 VNAVS-TDDYNMEEVISYDKNSFSVDPDNLL-NFIKFRRSVRKFKDK 94 >gi|146292946|ref|YP_001183370.1| electron transport complex protein RnfC [Shewanella putrefaciens CN-32] gi|145564636|gb|ABP75571.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella putrefaciens CN-32] Length = 793 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 47/126 (37%), Gaps = 11/126 (8%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 TIN P KG+ + P + CI C C +CPA P+ + Sbjct: 350 TINVPILKGTNCILVPSNQEIGVTPEE-KACIRCGECANVCPA-----LLLPQQLFWHAK 403 Query: 93 TVRYD----IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRW 148 YD ++ CI CG C CP I + A ++ +K++ R+ Sbjct: 404 AEEYDKAASFNLKDCIECGCCSYVCP-SDIPLVEYYRIAKSALKQTADEKQQAERAKHRF 462 Query: 149 ESEIVR 154 E+ + R Sbjct: 463 EARLAR 468 >gi|319426525|gb|ADV54599.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella putrefaciens 200] Length = 793 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 47/126 (37%), Gaps = 11/126 (8%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 TIN P KG+ + P + CI C C +CPA P+ + Sbjct: 350 TINVPILKGTNCILVPSNQEIGVTPEE-KACIRCGECANVCPA-----LLLPQQLFWHAK 403 Query: 93 TVRYD----IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRW 148 YD ++ CI CG C CP I + A ++ +K++ R+ Sbjct: 404 AEEYDKAASFNLKDCIECGCCSYVCP-SDIPLVEYYRIAKSALKQTADEKQQAERAKHRF 462 Query: 149 ESEIVR 154 E+ + R Sbjct: 463 EARLAR 468 >gi|123453905|ref|XP_001314811.1| pyruvate:ferredoxin oxidoreductase E [Trichomonas vaginalis G3] gi|121897468|gb|EAY02588.1| pyruvate:ferredoxin oxidoreductase E [Trichomonas vaginalis G3] Length = 1157 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 12/91 (13%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPA-----------QAITIESGPRCHDGTR 91 TS + A+ E++CI C C +CP +A + + + Sbjct: 662 TSQWEKRGIAVDVPKWDEKKCIQCNTCSMVCPHAVIRPFLLTDEEAKGMVTLKAKGKEIK 721 Query: 92 -RTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 R I + C CG C +CP A+ Sbjct: 722 DYRFRIQISPLDCTGCGTCVTSCPTQALSMQ 752 >gi|120598969|ref|YP_963543.1| electron transport complex protein RnfC [Shewanella sp. W3-18-1] gi|120559062|gb|ABM24989.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella sp. W3-18-1] Length = 793 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 47/126 (37%), Gaps = 11/126 (8%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 TIN P KG+ + P + CI C C +CPA P+ + Sbjct: 350 TINVPILKGTNCILVPSNQEIGVTPEE-KACIRCGECANVCPA-----LLLPQQLFWHAK 403 Query: 93 TVRYD----IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRW 148 YD ++ CI CG C CP I + A ++ +K++ R+ Sbjct: 404 AEEYDKAASFNLKDCIECGCCSYVCP-SDIPLVEYYRIAKSALKQTADEKQQAERAKHRF 462 Query: 149 ESEIVR 154 E+ + R Sbjct: 463 EARLAR 468 >gi|225570897|ref|ZP_03779920.1| hypothetical protein CLOHYLEM_07001 [Clostridium hylemonae DSM 15053] gi|225160359|gb|EEG72978.1| hypothetical protein CLOHYLEM_07001 [Clostridium hylemonae DSM 15053] Length = 263 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 17/94 (18%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 +E+CI C C+ CPA AI I G C++CG C CP Sbjct: 1 MIQIDKEKCIGCGACKRDCPADAIKIREGKAEVFK------------DCLHCGHCVAVCP 48 Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLNNGDRW 148 V+A P ++ A Y+KE+ + D + Sbjct: 49 VNAAAI-PEYDMAEVE----AYEKEKFTLDADHY 77 >gi|170751379|ref|YP_001757639.1| formate dehydrogenase, alpha subunit [Methylobacterium radiotolerans JCM 2831] gi|170657901|gb|ACB26956.1| formate dehydrogenase, alpha subunit [Methylobacterium radiotolerans JCM 2831] Length = 953 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 26/81 (32%), Gaps = 2/81 (2%) Query: 55 RYPNGEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + +CI C C C + R D + +C+ CG C +A Sbjct: 165 YFTYDPSKCIVCNRCVRACEEVQGTFALTIAGRGFDSRVAAGPTNFFESECVSCGACVQA 224 Query: 113 CPVDAIVEGPNFEFATETRQE 133 CP + E E+ E Sbjct: 225 CPTATLQEKSIHEYGQPEHAE 245 >gi|196034106|ref|ZP_03101516.1| molybdopterin oxidoreductase family protein [Bacillus cereus W] gi|195993180|gb|EDX57138.1| molybdopterin oxidoreductase family protein [Bacillus cereus W] Length = 979 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 7/92 (7%) Query: 33 TINYPFE-KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 YP+E K S Y +CIAC C +C + Sbjct: 123 HQKYPYEPKVDVSEVDMTHP---FYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERP 179 Query: 92 RTVR---YDIDMIKCIYCGLCQEACPVDAIVE 120 R + +I+ C+ CG C CP +A++E Sbjct: 180 RVIWDEGVNINDSSCVSCGQCVTICPCNALME 211 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 91 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|91226395|ref|ZP_01261194.1| putative formate dehydrogenase, alpha subunit [Vibrio alginolyticus 12G01] gi|91189209|gb|EAS75489.1| putative formate dehydrogenase, alpha subunit [Vibrio alginolyticus 12G01] Length = 1429 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 14/79 (17%) Query: 59 GEERCIACKLCEAICPAQAITIE--------------SGPRCHDGTRRTVRYDIDMIKCI 104 RCI+C C C +A+ R H G+ + + C+ Sbjct: 648 DANRCISCGQCIQACRDKAVHGVLNFVCDKQGRPALRPDDRPHFGSNKNGLTLMGDSNCV 707 Query: 105 YCGLCQEACPVDAIVEGPN 123 CG C + CP A+V+ + Sbjct: 708 QCGACVQVCPTGAMVDSRD 726 >gi|16801792|ref|NP_472060.1| hypothetical protein lin2731 [Listeria innocua Clip11262] gi|16415267|emb|CAC97957.1| lin2731 [Listeria innocua Clip11262] Length = 995 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 3/84 (3%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 + + + Y ++CI C C C + R + D Sbjct: 125 RPYREKGYLNDFTHPFYRYDPDQCILCGRCVEACQQVQVNETLSIDWERSQPRVIWDDDR 184 Query: 100 MIK---CIYCGLCQEACPVDAIVE 120 C+ CGLC CP +A++E Sbjct: 185 PANLSSCVSCGLCATVCPCNALME 208 Score = 39.3 bits (90), Expect = 0.16, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 9/69 (13%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCI 104 R N C C C+ + + +E R + Y D +CI Sbjct: 90 RILENHLLYCTVCDNNNGNCKVHNTTELLGVEKQDRPYREKGYLNDFTHPFYRYDPDQCI 149 Query: 105 YCGLCQEAC 113 CG C EAC Sbjct: 150 LCGRCVEAC 158 >gi|163847637|ref|YP_001635681.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [Chloroflexus aurantiacus J-10-fl] gi|222525495|ref|YP_002569966.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [Chloroflexus sp. Y-400-fl] gi|163668926|gb|ABY35292.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Chloroflexus aurantiacus J-10-fl] gi|222449374|gb|ACM53640.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Chloroflexus sp. Y-400-fl] Length = 1192 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 26/92 (28%), Gaps = 16/92 (17%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPR 85 T+ + AL CI C C +CP A Sbjct: 670 PTGTTKWEKRNIALEIPVWDPNICIQCNKCVFVCPHATIRAKVYPEEALAGAPEGFLSAP 729 Query: 86 CHDGTRRTVRY--DIDMIKCIYCGLCQEACPV 115 RY + C CGLC EACPV Sbjct: 730 ARFKEFPGQRYTLQVAPEDCTGCGLCVEACPV 761 >gi|298369582|ref|ZP_06980899.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria sp. oral taxon 014 str. F0314] gi|298282139|gb|EFI23627.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria sp. oral taxon 014 str. F0314] Length = 284 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 10/66 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C C CP AI R + + + +C CGLC CPVD Sbjct: 74 WIDETACIGCTACIRACPVDAIMG----------ARKLMHTVIADECTGCGLCVAPCPVD 123 Query: 117 AIVEGP 122 I P Sbjct: 124 CIHMQP 129 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 15/34 (44%) Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + ID CI C C ACPVDAI+ Sbjct: 63 APAKIQHHALAWIDETACIGCTACIRACPVDAIM 96 >gi|154496907|ref|ZP_02035603.1| hypothetical protein BACCAP_01200 [Bacteroides capillosus ATCC 29799] gi|150273865|gb|EDN00978.1| hypothetical protein BACCAP_01200 [Bacteroides capillosus ATCC 29799] Length = 507 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID------MIKCIYCGLCQ 110 +++CI C C +C +AI I+ P + DI+ KC+ CG+C Sbjct: 148 HIDQDKCIKCGRCADVCSYKAIIIQERPCAVACGVDAIHTDINGKAEIDYDKCVSCGMCL 207 Query: 111 EACPVDAI 118 CP AI Sbjct: 208 VNCPFGAI 215 Score = 40.9 bits (94), Expect = 0.068, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 11/61 (18%) Query: 63 CIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C CE +CP AI ++ R R ID KCI CG C + C AI+ Sbjct: 121 CQGCLAHPCEEVCPKDAIKLD---------RYNGRSHIDQDKCIKCGRCADVCSYKAIII 171 Query: 121 G 121 Sbjct: 172 Q 172 >gi|124485168|ref|YP_001029784.1| hypothetical protein Mlab_0341 [Methanocorpusculum labreanum Z] gi|124362709|gb|ABN06517.1| Cobyrinic acid a,c-diamide synthase [Methanocorpusculum labreanum Z] Length = 293 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 34/101 (33%), Gaps = 18/101 (17%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 + + F G A P C C C C A+ ++ G Y I+ Sbjct: 49 RLIRTDPFMGMKAAVIDPE---LCTECGACLEHCRFHAVEMDDGA-----------YLIN 94 Query: 100 MIKCIYCGLCQEACPVDAIVEGPN----FEFATETRQELYY 136 +C C +C CP DA+ P ++ R L + Sbjct: 95 PSRCEGCAVCTIVCPADAVSMQPRQTGVIMYSEVDRGHLVH 135 >gi|15895764|ref|NP_349113.1| pyruvate ferredoxin oxidoreductase [Clostridium acetobutylicum ATCC 824] gi|15025520|gb|AAK80453.1|AE007748_9 Pyruvate ferredoxin oxidoreductase [Clostridium acetobutylicum ATCC 824] gi|325509914|gb|ADZ21550.1| Pyruvate ferredoxin oxidoreductase [Clostridium acetobutylicum EA 2018] Length = 1173 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 32/104 (30%), Gaps = 18/104 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY 96 A+ ++CI C C +CP A + + Y Sbjct: 677 IAVNVPEWQIDKCIQCNQCAYVCPHSVIRACLLDDEEKENAPERFVTKKPVGKGLEHLHY 736 Query: 97 --DIDMIKCIYCGLCQEACPVD--AIVEGPNFEFATETRQELYY 136 I + C CG C + CP A++ P E E + Y Sbjct: 737 KIQISPLDCTGCGNCADICPAPGKALIMKPAAEQIEEQSENFEY 780 >gi|296242566|ref|YP_003650053.1| pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta [Thermosphaera aggregans DSM 11486] gi|296095150|gb|ADG91101.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Thermosphaera aggregans DSM 11486] Length = 93 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 25/65 (38%), Gaps = 10/65 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +C C CE CP I +E ID+ C CG+C E CPV AI Sbjct: 37 DNGKCTRCFTCETYCPVNVIRVEPE----------TGVSIDLDYCKGCGVCAEVCPVKAI 86 Query: 119 VEGPN 123 P Sbjct: 87 SMVPE 91 >gi|226950711|ref|YP_002805802.1| electron transfer flavoprotein, alpha subunit/FixB family protein [Clostridium botulinum A2 str. Kyoto] gi|226842543|gb|ACO85209.1| electron transfer flavoprotein, alpha subunit/FixB family protein [Clostridium botulinum A2 str. Kyoto] Length = 398 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 12/58 (20%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+C AC +CE CP AI + +G + KC CG C EACP DAI Sbjct: 8 EKCKACGICEKQCPFDAIHVVNGLAEVN------------EKCTICGACVEACPFDAI 53 Score = 37.0 bits (84), Expect = 0.95, Method: Composition-based stats. Identities = 11/22 (50%), Positives = 14/22 (63%) Query: 98 IDMIKCIYCGLCQEACPVDAIV 119 I KC CG+C++ CP DAI Sbjct: 5 IIKEKCKACGICEKQCPFDAIH 26 >gi|170696015|ref|ZP_02887153.1| dihydroorotate dehydrogenase family protein [Burkholderia graminis C4D1M] gi|170139095|gb|EDT07285.1| dihydroorotate dehydrogenase family protein [Burkholderia graminis C4D1M] Length = 442 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 8/75 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117 +++CI C LC C A + + +++ +C+ C LC CPV Sbjct: 341 DQDKCIKCGLCHIACEDTAHQAITKEKDGV-----RHFEVVDSECVGCNLCMHVCPVEQC 395 Query: 118 IVE--GPNFEFATET 130 I N E+A T Sbjct: 396 ITMERVDNGEYANWT 410 >gi|154685660|ref|YP_001420821.1| YjgC [Bacillus amyloliquefaciens FZB42] gi|154351511|gb|ABS73590.1| YjgC [Bacillus amyloliquefaciens FZB42] Length = 996 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 9/101 (8%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 ++ + PF++ + Y ++CI C C C +T Sbjct: 125 TVKEM--KINHQSIPFDQKPYPKD----ESNPFYRYDPDQCILCGRCVEACQDVQVTETL 178 Query: 83 GPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPVDAIVE 120 R + I+ C+ CG C CP +A++E Sbjct: 179 SIDWERKRPRVIWDQDVPINESSCVSCGHCSTVCPCNAMME 219 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 21/66 (31%), Gaps = 9/66 (13%) Query: 57 PNGEERCIAC----KLCEAICPA-----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 N E C C CE +I + + Y D +CI CG Sbjct: 104 HNHELYCTVCDYNNGSCEVHNTVKEMKINHQSIPFDQKPYPKDESNPFYRYDPDQCILCG 163 Query: 108 LCQEAC 113 C EAC Sbjct: 164 RCVEAC 169 >gi|86158682|ref|YP_465467.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Anaeromyxobacter dehalogenans 2CP-C] gi|85775193|gb|ABC82030.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 438 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 32/86 (37%), Gaps = 10/86 (11%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + ERC+ C C CP AI P R+ R +D +C+ CG+C C A Sbjct: 290 SDRERCLGCGKCSKKCPVGAIPRVPDPDPRF--RKHGRPQVDEARCLGCGVCTLTCNPGA 347 Query: 118 IVEGPNFEFATETRQELYYDKERLLN 143 + R + E LL Sbjct: 348 MKLHH--------RTQRVLHPEDLLE 365 >gi|308049948|ref|YP_003913514.1| electron transport complex, RnfABCDGE type, C subunit [Ferrimonas balearica DSM 9799] gi|307632138|gb|ADN76440.1| electron transport complex, RnfABCDGE type, C subunit [Ferrimonas balearica DSM 9799] Length = 895 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 36/103 (34%), Gaps = 3/103 (2%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 CI C C +CP Q++ + +++ CI CG C CP I Sbjct: 379 RNCIRCGECAQVCP-QSLLPQQLYWHSQAAEYDKAAQLNLSDCIECGACAFVCP-SDIPL 436 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 ++ A ++ + R+++ R + + R Sbjct: 437 VHHYRIAKAELRDAAQKATKAEEAKLRFDARQAR-LEKEKAER 478 >gi|307331425|ref|ZP_07610543.1| molybdopterin oxidoreductase Fe4S4 region [Streptomyces violaceusniger Tu 4113] gi|306882924|gb|EFN13992.1| molybdopterin oxidoreductase Fe4S4 region [Streptomyces violaceusniger Tu 4113] Length = 290 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 4/75 (5%) Query: 56 YPNGEERCIACKLCEAIC--PAQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQE 111 Y ++CI C C C Q + R + +D + C+YCG C E Sbjct: 145 YVRDYDKCILCYKCVDACGEQWQNTFAIAVAGRGFDARISTEHDAPLTDSACVYCGNCIE 204 Query: 112 ACPVDAIVEGPNFEF 126 CP A+ F+ Sbjct: 205 VCPTGALSFKTEFDM 219 >gi|294101031|ref|YP_003552889.1| Cobyrinic acid ac-diamide synthase [Aminobacterium colombiense DSM 12261] gi|293616011|gb|ADE56165.1| Cobyrinic acid ac-diamide synthase [Aminobacterium colombiense DSM 12261] Length = 292 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 33/104 (31%), Gaps = 14/104 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ERC C C C A+ + + KC CG C CP AI Sbjct: 67 DTERCTVCGGCVGFCRFNALEKANNG-----------ITLLPWKCEGCGGCALVCPHQAI 115 Query: 119 VEGPNFEFATETRQELYYDK--ERLLNNGDRWESEIVRNIVTDS 160 ++E R Y L+ G+ +V + +S Sbjct: 116 SM-HSYEQGQYWRGTTTYGPLWHARLHAGEENSGMLVARLKKES 158 >gi|260892256|ref|YP_003238353.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Ammonifex degensii KC4] gi|260864397|gb|ACX51503.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Ammonifex degensii KC4] Length = 995 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 28/89 (31%), Gaps = 7/89 (7%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------ 97 FR + L E C AC +C +CP + + Sbjct: 88 PGNFRVKLELHPRGVKVEECRACGVCFKVCPVEVPDEFNQGLSSRKAIYQPYPQAFPRAA 147 Query: 98 -IDMIKCIYCGLCQEACPVDAIVEGPNFE 125 ID C CG C++ CP AI E Sbjct: 148 VIDWGSCTRCGRCRDTCPTKAIDLEMEPE 176 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 26/76 (34%), Gaps = 15/76 (19%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +C+AC C +CP A I+ + C CG C CP AI Sbjct: 923 DPAKCVACLTCVRVCPYGAPRYTPEK---------GVVAIEPLACQGCGTCVGECPNAAI 973 Query: 119 VEGPNFEFATETRQEL 134 E R+++ Sbjct: 974 ------ELEGYRREQM 983 >gi|260576927|ref|ZP_05844909.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Rhodobacter sp. SW2] gi|259020863|gb|EEW24177.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Rhodobacter sp. SW2] Length = 544 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 9/62 (14%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C C +CP A+ + I++ C CG+C CP AI Sbjct: 490 NCFECDTCYGVCPDNAVIKLGSGMG---------FTINLDYCKGCGICAAECPCGAIDMV 540 Query: 122 PN 123 P Sbjct: 541 PE 542 >gi|326202787|ref|ZP_08192654.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Clostridium papyrosolvens DSM 2782] gi|325986864|gb|EGD47693.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Clostridium papyrosolvens DSM 2782] Length = 1183 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 35/110 (31%), Gaps = 18/110 (16%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES--------------- 82 FE+G+++ RG L + + C+ C C +C I Sbjct: 673 FEQGASAYEKRGTAVLVPEWD-AKLCLQCNSCAFVCSHATIRPFMLSEDEIKAAPANIKL 731 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130 + + + C+ CG C CPV AI P A E Sbjct: 732 ADTKPKASEYKFTMSVSPLDCMGCGECITVCPVKEKAIKMVPQESQAEEQ 781 >gi|222097027|ref|YP_002531084.1| formate dehydrogenase, alpha subunit [Bacillus cereus Q1] gi|221241085|gb|ACM13795.1| formate dehydrogenase, alpha subunit [Bacillus cereus Q1] Length = 979 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 7/92 (7%) Query: 33 TINYPFE-KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 YP+E K S Y +CIAC C +C + Sbjct: 123 HQKYPYEPKVDVSEVDMTHP---FYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERP 179 Query: 92 RTVR---YDIDMIKCIYCGLCQEACPVDAIVE 120 R + +I+ C+ CG C CP +A++E Sbjct: 180 RVIWDEGVNINDSSCVSCGQCVTICPCNALME 211 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 91 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|254173091|ref|ZP_04879765.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Thermococcus sp. AM4] gi|214033247|gb|EEB74075.1| Respiratory-chain NADH dehydrogenase 51 Kd subunit family [Thermococcus sp. AM4] Length = 599 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 10/66 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L RY E+C C C CPA AIT E + ++ID CI CG C E Sbjct: 537 LIRYVIIPEKCTGCTACAIFCPANAITGE----------KLKPHEIDQSACIKCGTCYEV 586 Query: 113 CPVDAI 118 C +AI Sbjct: 587 CRFNAI 592 Score = 38.5 bits (88), Expect = 0.30, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 15/39 (38%) Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 G + +RY I KC C C CP +AI Sbjct: 524 HIEGKCPAKVCKPLIRYVIIPEKCTGCTACAIFCPANAI 562 >gi|206968949|ref|ZP_03229904.1| molybdopterin oxidoreductase family protein [Bacillus cereus AH1134] gi|206735990|gb|EDZ53148.1| molybdopterin oxidoreductase family protein [Bacillus cereus AH1134] Length = 979 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 7/92 (7%) Query: 33 TINYPFE-KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 YP+E K S Y +CIAC C +C + Sbjct: 123 HQKYPYEPKVDVSEVDMTHP---FYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERP 179 Query: 92 RTVR---YDIDMIKCIYCGLCQEACPVDAIVE 120 R + +I+ C+ CG C CP +A++E Sbjct: 180 RVIWDEGVNINDSSCVSCGQCVTICPCNALME 211 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 91 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|218904697|ref|YP_002452531.1| molybdopterin oxidoreductase family protein [Bacillus cereus AH820] gi|218540186|gb|ACK92584.1| molybdopterin oxidoreductase family protein [Bacillus cereus AH820] Length = 979 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+E + Y +CIAC C +C + R Sbjct: 123 HQKYPYE--PKVDASEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 180 Query: 93 TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120 + +I+ C+ CG C CP +A++E Sbjct: 181 VIWDEGVNINDSSCVSCGQCVTICPCNALME 211 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 91 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDASEVDMTHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|83746719|ref|ZP_00943768.1| Formate hydrogenlyase subunit 6 [Ralstonia solanacearum UW551] gi|83726672|gb|EAP73801.1| Formate hydrogenlyase subunit 6 [Ralstonia solanacearum UW551] Length = 719 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 9/74 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RC C C + CP+QA+ ++ + C+ CGLC+ CP DAI Sbjct: 587 DRARCTLCMACVSACPSQALRDQAE---------QPVLSMIERNCVQCGLCETTCPEDAI 637 Query: 119 VEGPNFEFATETRQ 132 P + RQ Sbjct: 638 ALVPRLNLSAGARQ 651 Score = 41.2 bits (95), Expect = 0.041, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 7/55 (12%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C+ C +C A AIT + + C+ CG C ACP A+ Sbjct: 334 VGCEACVQVCSAAAITSQWKDGRGSVH-------VTPNLCVGCGACTTACPTGAL 381 Score = 38.5 bits (88), Expect = 0.34, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 20/48 (41%) Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 A +T G + R ID+ +C C C +ACP DAI Sbjct: 179 WPVHAGELTQVGGWLGAFDVQWRSRNPIDLDRCTRCNACIDACPEDAI 226 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 1/66 (1%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-IDMI 101 S R + E C+ C LCE CP AI + G R+ V + + Sbjct: 602 PSQALRDQAEQPVLSMIERNCVQCGLCETTCPEDAIALVPRLNLSAGARQPVTLNATEPF 661 Query: 102 KCIYCG 107 CI CG Sbjct: 662 HCIRCG 667 Score = 35.1 bits (79), Expect = 3.0, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 32/118 (27%), Gaps = 21/118 (17%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYP-----NGEERCIACKLCEAICPAQAITIESGP 84 +P G + A +RC C C CP AI Sbjct: 173 PPMARRWPVHAGELTQVGGWLGAFDVQWRSRNPIDLDRCTRCNACIDACPEDAID----- 227 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEAC-PVDAIVEGPNFEFATET-RQELYYDKER 140 Y ID+ C C +AC AI G T R +L +D Sbjct: 228 ---------TLYQIDLDACRDHRDCVKACGEAMAIDFGRLDAPQTYAGRFDLIFDLND 276 >gi|239908169|ref|YP_002954910.1| iron-sulphur binding protein [Desulfovibrio magneticus RS-1] gi|239798035|dbj|BAH77024.1| iron-sulphur binding protein [Desulfovibrio magneticus RS-1] Length = 210 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 28/74 (37%), Gaps = 11/74 (14%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G A+R E C C C CP AI I +G I+ C+ CG Sbjct: 79 GLIAVREASVDPEACHGCGACAEACPDAAIQITAGKAV-----------INQGTCLGCGA 127 Query: 109 CQEACPVDAIVEGP 122 C CP AI GP Sbjct: 128 CARVCPSRAIASGP 141 >gi|254509887|ref|ZP_05121954.1| iron-sulfur cluster-binding protein [Rhodobacteraceae bacterium KLH11] gi|221533598|gb|EEE36586.1| iron-sulfur cluster-binding protein [Rhodobacteraceae bacterium KLH11] Length = 631 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 30/82 (36%), Gaps = 9/82 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C C ++CP+ A+ + + C+ CG+C+ CP AI Sbjct: 479 DAGSCTLCLSCVSLCPSGALIDNPDK---------PQLNFQQDACLQCGICRTICPEQAI 529 Query: 119 VEGPNFEFATETRQELYYDKER 140 P + + + ++E Sbjct: 530 ELVPQLDLSDRALSQQVLNEEE 551 Score = 37.4 bits (85), Expect = 0.69, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 19/59 (32%), Gaps = 11/59 (18%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C ICP AIT ID + C CG C CP AI Sbjct: 257 TGCSNCLDICPTGAITPAGD-----------HVAIDPMICAGCGECSALCPSTAITYED 304 >gi|220927475|ref|YP_002504384.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Clostridium cellulolyticum H10] gi|219997803|gb|ACL74404.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Clostridium cellulolyticum H10] Length = 1183 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 33/110 (30%), Gaps = 18/110 (16%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES--------------- 82 FE G+++ RG L + C+ C C +C I Sbjct: 673 FEMGASAYEKRGTAVLVPEWD-ASLCLQCNSCAFVCSHATIRPFMLSEDEIKAAPSNIKL 731 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATET 130 + + + C+ CG C CPV AI P A E Sbjct: 732 ADTRPKASEYKFTMSVSPLDCMGCGECITVCPVKEKAIKMVPQESQAQEQ 781 >gi|126436658|ref|YP_001072349.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Mycobacterium sp. JLS] gi|126236458|gb|ABN99858.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Mycobacterium sp. JLS] Length = 548 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 24/63 (38%), Gaps = 3/63 (4%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C C +CP I GT ID CI CG C E CPVDAI Sbjct: 7 QNCCKDASCVPVCPVDCIRPAGEAGQFVGT---EMLYIDPETCIDCGACLEECPVDAIYY 63 Query: 121 GPN 123 + Sbjct: 64 DED 66 >gi|319936568|ref|ZP_08010982.1| hydrogenase [Coprobacillus sp. 29_1] gi|319808366|gb|EFW04926.1| hydrogenase [Coprobacillus sp. 29_1] Length = 457 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 9/77 (11%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 EE+CI C C+ IC ++ +D CI CG C CPV Sbjct: 21 QRDEEKCIKCGQCKNICQD---------YIGVHGTYSLEDTLDRAVCINCGQCANVCPVS 71 Query: 117 AIVEGPNFEFATETRQE 133 +I E + F E + Sbjct: 72 SIHETYEYPFIQEDMKN 88 >gi|296504078|ref|YP_003665778.1| formate dehydrogenase subunit alpha [Bacillus thuringiensis BMB171] gi|296325130|gb|ADH08058.1| formate dehydrogenase alpha chain [Bacillus thuringiensis BMB171] Length = 979 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+E + Y +CIAC C +C + R Sbjct: 123 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 180 Query: 93 TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120 + +I+ C+ CG C CP +A++E Sbjct: 181 VIWDEGVNINDSSCVSCGQCVTICPCNALME 211 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 91 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|228922280|ref|ZP_04085587.1| formate dehydrogenase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228837335|gb|EEM82669.1| formate dehydrogenase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 975 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+E + Y +CIAC C +C + R Sbjct: 119 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 176 Query: 93 TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120 + +I+ C+ CG C CP +A++E Sbjct: 177 VIWDEGVNINDSSCVSCGQCVTICPCNALME 207 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 87 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 146 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 147 CIACGQCVEVC 157 >gi|228953840|ref|ZP_04115879.1| formate dehydrogenase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228805808|gb|EEM52388.1| formate dehydrogenase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 975 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 7/92 (7%) Query: 33 TINYPFE-KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 YP+E K S Y +CIAC C +C + Sbjct: 119 HQKYPYEPKVDVSEVDMTHP---FYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERP 175 Query: 92 RTVR---YDIDMIKCIYCGLCQEACPVDAIVE 120 R + +I+ C+ CG C CP +A++E Sbjct: 176 RVIWDKGVNINDSSCVSCGQCVTICPCNALME 207 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 87 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 146 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 147 CIACGQCVEVC 157 >gi|228940656|ref|ZP_04103221.1| formate dehydrogenase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228973575|ref|ZP_04134158.1| formate dehydrogenase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228786162|gb|EEM34158.1| formate dehydrogenase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819035|gb|EEM65095.1| formate dehydrogenase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326941288|gb|AEA17184.1| formate dehydrogenase alpha chain [Bacillus thuringiensis serovar chinensis CT-43] Length = 979 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+E + Y +CIAC C +C + R Sbjct: 123 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 180 Query: 93 TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120 + +I+ C+ CG C CP +A++E Sbjct: 181 VIWDEGVNINDSSCVSCGQCVTICPCNALME 211 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 91 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|228980133|ref|ZP_04140448.1| formate dehydrogenase [Bacillus thuringiensis Bt407] gi|228779615|gb|EEM27867.1| formate dehydrogenase [Bacillus thuringiensis Bt407] Length = 975 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+E + Y +CIAC C +C + R Sbjct: 119 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 176 Query: 93 TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120 + +I+ C+ CG C CP +A++E Sbjct: 177 VIWDEGVNINDSSCVSCGQCVTICPCNALME 207 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 87 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 146 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 147 CIACGQCVEVC 157 >gi|229080777|ref|ZP_04213295.1| formate dehydrogenase [Bacillus cereus Rock4-2] gi|228702511|gb|EEL54979.1| formate dehydrogenase [Bacillus cereus Rock4-2] Length = 975 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+E + Y +CIAC C +C + R Sbjct: 119 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 176 Query: 93 TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120 + +I+ C+ CG C CP +A++E Sbjct: 177 VIWDEGVNINDSSCVSCGQCVTICPCNALME 207 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 87 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 146 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 147 CIACGQCVEVC 157 >gi|229047252|ref|ZP_04192852.1| formate dehydrogenase [Bacillus cereus AH676] gi|229128844|ref|ZP_04257820.1| formate dehydrogenase [Bacillus cereus BDRD-Cer4] gi|229146139|ref|ZP_04274515.1| formate dehydrogenase [Bacillus cereus BDRD-ST24] gi|228637350|gb|EEK93804.1| formate dehydrogenase [Bacillus cereus BDRD-ST24] gi|228654549|gb|EEL10411.1| formate dehydrogenase [Bacillus cereus BDRD-Cer4] gi|228724119|gb|EEL75464.1| formate dehydrogenase [Bacillus cereus AH676] Length = 975 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+E + Y +CIAC C +C + R Sbjct: 119 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 176 Query: 93 TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120 + +I+ C+ CG C CP +A++E Sbjct: 177 VIWDEGVNINDSSCVSCGQCVTICPCNALME 207 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 87 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 146 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 147 CIACGQCVEVC 157 >gi|229179856|ref|ZP_04307202.1| formate dehydrogenase [Bacillus cereus 172560W] gi|228603537|gb|EEK61012.1| formate dehydrogenase [Bacillus cereus 172560W] Length = 975 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+E + Y +CIAC C +C + R Sbjct: 119 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 176 Query: 93 TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120 + +I+ C+ CG C CP +A++E Sbjct: 177 VIWDKGVNINDSSCVSCGQCVTICPCNALME 207 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 87 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 146 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 147 CIACGQCVEVC 157 >gi|229191659|ref|ZP_04318638.1| formate dehydrogenase [Bacillus cereus ATCC 10876] gi|228591821|gb|EEK49661.1| formate dehydrogenase [Bacillus cereus ATCC 10876] Length = 975 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 7/92 (7%) Query: 33 TINYPFE-KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 YP+E K S Y +CIAC C +C + Sbjct: 119 HQKYPYEPKVDVSEVDMTHP---FYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERP 175 Query: 92 RTVR---YDIDMIKCIYCGLCQEACPVDAIVE 120 R + +I+ C+ CG C CP +A++E Sbjct: 176 RVIWDEGVNINDSSCVSCGQCVTICPCNALME 207 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 87 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 146 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 147 CIACGQCVEVC 157 >gi|255279826|ref|ZP_05344381.1| Fe-hydrogenase large subunit family protein [Bryantella formatexigens DSM 14469] gi|255269599|gb|EET62804.1| Fe-hydrogenase large subunit family protein [Bryantella formatexigens DSM 14469] Length = 507 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 6/66 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112 +++CI C C +C AI ++ P + D ID KC+ CG+C Sbjct: 150 DQDKCIKCGRCADVCSYHAIIVQERPCAAACGMDAIHTDANGKADIDYEKCVSCGMCLVN 209 Query: 113 CPVDAI 118 CP AI Sbjct: 210 CPFGAI 215 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 19/63 (30%), Gaps = 7/63 (11%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGT-------RRTVRYDIDMIKCIYCGLCQEACPV 115 C AC + P R R ID KCI CG C + C Sbjct: 107 CNACHEKRVFVTDGCRGCLAHPCVEVCPKGAVTLERTNGRSVIDQDKCIKCGRCADVCSY 166 Query: 116 DAI 118 AI Sbjct: 167 HAI 169 >gi|206975529|ref|ZP_03236442.1| molybdopterin oxidoreductase family protein [Bacillus cereus H3081.97] gi|206746431|gb|EDZ57825.1| molybdopterin oxidoreductase family protein [Bacillus cereus H3081.97] Length = 979 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+E + Y +CIAC C +C + R Sbjct: 123 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 180 Query: 93 TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120 + +I+ C+ CG C CP +A++E Sbjct: 181 VIWDEGVNINDSSCVSCGQCVTICPCNALME 211 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 91 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|218235645|ref|YP_002368385.1| molybdopterin oxidoreductase family protein [Bacillus cereus B4264] gi|218163602|gb|ACK63594.1| molybdopterin oxidoreductase family protein [Bacillus cereus B4264] Length = 979 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+E + Y +CIAC C +C + R Sbjct: 123 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 180 Query: 93 TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120 + +I+ C+ CG C CP +A++E Sbjct: 181 VIWDEGVNINDSSCVSCGQCVTICPCNALME 211 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 91 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|161524127|ref|YP_001579139.1| ferredoxin [Burkholderia multivorans ATCC 17616] gi|189351116|ref|YP_001946744.1| ferredoxin [Burkholderia multivorans ATCC 17616] gi|160341556|gb|ABX14642.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia multivorans ATCC 17616] gi|189335138|dbj|BAG44208.1| electron transport complex protein [Burkholderia multivorans ATCC 17616] Length = 320 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 22/66 (33%), Gaps = 10/66 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C LC CP AI + I C C LC CPVD Sbjct: 113 FIDENLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVASLCTGCDLCVPPCPVD 162 Query: 117 AIVEGP 122 I P Sbjct: 163 CIAMVP 168 >gi|114763310|ref|ZP_01442734.1| iron-sulfur cluster-binding protein [Pelagibaca bermudensis HTCC2601] gi|114544108|gb|EAU47118.1| iron-sulfur cluster-binding protein [Roseovarius sp. HTCC2601] Length = 638 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 37/119 (31%), Gaps = 14/119 (11%) Query: 23 CLRYFFKAKTTINYPF-EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 R + +P E + L ++ C C C ++CP+ A+ Sbjct: 455 TRRQITRQAARALHPETESLALPEGAPYGAVLV----DQDACTLCLSCVSLCPSGALGDN 510 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140 + C+ CGLC CP DAI P E + ++E Sbjct: 511 PD---------LPQLRFQEDACLQCGLCANVCPEDAIAYEPRLLLTDEAFDQKVLNEEE 560 Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 11/55 (20%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C +CP AI+ + +D + C CG C ACP AI Sbjct: 267 VGCTSCLDLCPTGAISPDGD-----------HVSVDPMICAGCGACSSACPSGAI 310 >gi|52141962|ref|YP_084867.1| formate dehydrogenase, alpha subunit [Bacillus cereus E33L] gi|51975431|gb|AAU16981.1| formate dehydrogenase, alpha subunit [Bacillus cereus E33L] Length = 979 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 7/92 (7%) Query: 33 TINYPFE-KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 YP+E K S Y +CIAC C +C + Sbjct: 123 HQKYPYEPKVDVSEVDMTHP---FYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERP 179 Query: 92 RTVR---YDIDMIKCIYCGLCQEACPVDAIVE 120 R + +I+ C+ CG C CP +A++E Sbjct: 180 RVIWDEGVNINDSSCVSCGQCVTICPCNALME 211 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 91 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|330995206|ref|ZP_08319119.1| pyruvate synthase [Paraprevotella xylaniphila YIT 11841] gi|329576348|gb|EGG57862.1| pyruvate synthase [Paraprevotella xylaniphila YIT 11841] Length = 1182 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 47/146 (32%), Gaps = 36/146 (24%) Query: 28 FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------- 80 FK +P +G+ + RG A N + CI C C +CP AI Sbjct: 658 FKGIEDGTWP--QGTAAYEKRGVAAFVPTWN-PDNCIQCNKCAYVCPHAAIRPFVLDAEE 714 Query: 81 --------ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP--------------VDAI 118 R + ++ C+ CG C + CP + Sbjct: 715 MKGFNAPVIEMKAPAAMKGMNFRIQVSVMDCLGCGNCADVCPGNPKLGKALTMVPLEQEL 774 Query: 119 VEGPNFEFATETRQELYYDKERLLNN 144 E PN+E+ + K+ L++ Sbjct: 775 DEAPNWEYCVKN----VKSKQDLVDI 796 >gi|261823320|ref|YP_003261426.1| glycyl-radical enzyme activating protein family [Pectobacterium wasabiae WPP163] gi|261607333|gb|ACX89819.1| glycyl-radical enzyme activating protein family [Pectobacterium wasabiae WPP163] Length = 305 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 27/77 (35%), Gaps = 15/77 (19%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103 R + L N CI C C +C A++ + + ID +C Sbjct: 45 PESQRPQPELIYKKND---CIRCGKCVDVCKQHALSPNN------------PFFIDRERC 89 Query: 104 IYCGLCQEACPVDAIVE 120 I CG C CP A+ Sbjct: 90 IQCGDCTHVCPTQALEM 106 >gi|228959758|ref|ZP_04121433.1| formate dehydrogenase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228799888|gb|EEM46830.1| formate dehydrogenase [Bacillus thuringiensis serovar pakistani str. T13001] Length = 975 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+E + Y +CIAC C +C + R Sbjct: 119 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 176 Query: 93 TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120 + +I+ C+ CG C CP +A++E Sbjct: 177 VIWDEGVNINDSSCVSCGQCVTICPCNALME 207 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 87 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 146 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 147 CIACGQCVEVC 157 >gi|229174233|ref|ZP_04301767.1| formate dehydrogenase [Bacillus cereus MM3] gi|228609251|gb|EEK66539.1| formate dehydrogenase [Bacillus cereus MM3] Length = 975 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+E + Y +CIAC C +C + R Sbjct: 119 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 176 Query: 93 TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120 + +I+ C+ CG C CP +A++E Sbjct: 177 VIWDEGVNINDSSCVSCGQCVTICPCNALME 207 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 87 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 146 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 147 CIACGQCVEVC 157 >gi|217960973|ref|YP_002339541.1| molybdopterin oxidoreductase family protein [Bacillus cereus AH187] gi|229140185|ref|ZP_04268743.1| formate dehydrogenase [Bacillus cereus BDRD-ST26] gi|217066127|gb|ACJ80377.1| molybdopterin oxidoreductase family protein [Bacillus cereus AH187] gi|228643271|gb|EEK99544.1| formate dehydrogenase [Bacillus cereus BDRD-ST26] Length = 979 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+E + Y +CIAC C +C + R Sbjct: 123 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 180 Query: 93 TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120 + +I+ C+ CG C CP +A++E Sbjct: 181 VIWDEGVNINDSSCVSCGQCVTICPCNALME 211 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 91 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|330992501|ref|ZP_08316449.1| hypothetical protein SXCC_02408 [Gluconacetobacter sp. SXCC-1] gi|329760700|gb|EGG77196.1| hypothetical protein SXCC_02408 [Gluconacetobacter sp. SXCC-1] Length = 424 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 10/85 (11%) Query: 45 PRFRGEHALRRYPN-----GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 RF + L N ++ CI C LC C + + R Y++ Sbjct: 322 ERFVPWNQLNMKFNTIAKIDQDACIKCGLCHIACEDTSHQAIAKTRVDG----ERHYEVI 377 Query: 100 MIKCIYCGLCQEACPV-DAIVEGPN 123 +C+ C LC CPV D I P Sbjct: 378 DAECVGCNLCAHVCPVSDCITMQPQ 402 >gi|323697908|ref|ZP_08109820.1| Glutamate synthase (NADPH) [Desulfovibrio sp. ND132] gi|323457840|gb|EGB13705.1| Glutamate synthase (NADPH) [Desulfovibrio desulfuricans ND132] Length = 509 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 24/78 (30%), Gaps = 9/78 (11%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + E CI CK+C C +A + + D K Sbjct: 2 LFQPINKNYHEFCIERDPELCINCKVCVRQCSYEAHYWDEARQKVM---------HDNSK 52 Query: 103 CIYCGLCQEACPVDAIVE 120 CI C C+ CP A+ Sbjct: 53 CIGCHRCEALCPTAALNI 70 >gi|229071070|ref|ZP_04204296.1| formate dehydrogenase [Bacillus cereus F65185] gi|228712010|gb|EEL63959.1| formate dehydrogenase [Bacillus cereus F65185] Length = 975 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+E + Y +CIAC C +C + R Sbjct: 119 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 176 Query: 93 TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120 + +I+ C+ CG C CP +A++E Sbjct: 177 VIWDEGVNINDSSCVSCGQCVTICPCNALME 207 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 87 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 146 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 147 CIACGQCVEVC 157 >gi|229197682|ref|ZP_04324402.1| formate dehydrogenase [Bacillus cereus m1293] gi|228585759|gb|EEK43857.1| formate dehydrogenase [Bacillus cereus m1293] Length = 975 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+E + Y +CIAC C +C + R Sbjct: 119 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 176 Query: 93 TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120 + +I+ C+ CG C CP +A++E Sbjct: 177 VIWDEGVNINDSSCVSCGQCVTICPCNALME 207 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 87 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 146 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 147 CIACGQCVEVC 157 >gi|254520090|ref|ZP_05132146.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA] gi|226913839|gb|EEH99040.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA] Length = 634 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 10/65 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + CI C C CP AI + ++ I++ KCI CGLC EACP Sbjct: 574 YEVTDSCIGCTKCLRACPVLAIKG----------KIREKHIINIDKCIRCGLCYEACPTK 623 Query: 117 AIVEG 121 AI++ Sbjct: 624 AIIKT 628 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 8/79 (10%) Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 + +C G + + CI C C ACPV AI + R Sbjct: 549 FFNNEYKEHVIDKKCTAGVCKGLVKYEVTDSCIGCTKCLRACPVLAIK--------GKIR 600 Query: 132 QELYYDKERLLNNGDRWES 150 ++ + ++ + G +E+ Sbjct: 601 EKHIINIDKCIRCGLCYEA 619 >gi|164686661|ref|ZP_02210689.1| hypothetical protein CLOBAR_00256 [Clostridium bartlettii DSM 16795] gi|164604051|gb|EDQ97516.1| hypothetical protein CLOBAR_00256 [Clostridium bartlettii DSM 16795] Length = 622 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 10/68 (14%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 AL+ + ++C C C CP AIT E + ID KCI CG C E Sbjct: 563 ALKTFKIDPDKCKGCTKCARNCPVGAITGEKKEA----------HVIDTTKCIKCGACME 612 Query: 112 ACPVDAIV 119 C DAI Sbjct: 613 GCKFDAIY 620 Score = 38.5 bits (88), Expect = 0.32, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 20/71 (28%), Gaps = 8/71 (11%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 E I G + ID KC C C CPV AI E Sbjct: 541 ELFRHEYEEHIVDGKCRAHVCSALKTFKIDPDKCKGCTKCARNCPVGAI--------TGE 592 Query: 130 TRQELYYDKER 140 ++ D + Sbjct: 593 KKEAHVIDTTK 603 >gi|144899879|emb|CAM76743.1| NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Magnetospirillum gryphiswaldense MSR-1] Length = 567 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 5/60 (8%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C+AC C +CP A+ S Y D C CGLC + CP I Sbjct: 510 NCLACDNCWTLCPDNAVLKTSEMAKDG-----SHYLFDYEYCKGCGLCAKECPCGFISMQ 564 >gi|327398403|ref|YP_004339272.1| NADH dehydrogenase (quinone) [Hippea maritima DSM 10411] gi|327181032|gb|AEA33213.1| NADH dehydrogenase (quinone) [Hippea maritima DSM 10411] Length = 785 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 2/83 (2%) Query: 38 FEKGSTSPRFRG-EHALRRYPNGEERCIACKLCEAICPAQAITIE-SGPRCHDGTRRTVR 95 E S + H R + CIAC+ C IC + + G R Sbjct: 128 EEADPLSVPNKSIHHEWRIIHHDANLCIACRRCVTICDKVVNFGILAMAKKEWGGREVDT 187 Query: 96 YDIDMIKCIYCGLCQEACPVDAI 118 D ++C +CG C CP A+ Sbjct: 188 KDGKPLECEFCGQCVSICPTGAM 210 >gi|324327470|gb|ADY22730.1| formate dehydrogenase, alpha subunit [Bacillus thuringiensis serovar finitimus YBT-020] Length = 979 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+E + Y +CIAC C +C + R Sbjct: 123 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 180 Query: 93 TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120 + +I+ C+ CG C CP +A++E Sbjct: 181 VIWDEGVNINDSSCVSCGQCVTICPCNALME 211 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 91 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|229151767|ref|ZP_04279967.1| formate dehydrogenase [Bacillus cereus m1550] gi|228631694|gb|EEK88323.1| formate dehydrogenase [Bacillus cereus m1550] Length = 975 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+E + Y +CIAC C +C + R Sbjct: 119 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 176 Query: 93 TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120 + +I+ C+ CG C CP +A++E Sbjct: 177 VIWDEGVNINDSSCVSCGQCVTICPCNALME 207 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 87 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 146 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 147 CIACGQCVEVC 157 >gi|30021674|ref|NP_833305.1| formate dehydrogenase alpha chain [Bacillus cereus ATCC 14579] gi|29897229|gb|AAP10506.1| Formate dehydrogenase alpha chain [Bacillus cereus ATCC 14579] Length = 979 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+E + Y +CIAC C +C + R Sbjct: 123 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 180 Query: 93 TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120 + +I+ C+ CG C CP +A++E Sbjct: 181 VIWDEGVNINDSSCVSCGQCVTICPCNALME 211 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 91 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|300703372|ref|YP_003744974.1| 4fe-4S ferredoxin [Ralstonia solanacearum CFBP2957] gi|299071035|emb|CBJ42344.1| putative 4Fe-4S ferredoxin [Ralstonia solanacearum CFBP2957] Length = 719 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 9/74 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RC C C + CP+QA+ ++ + C+ CGLC+ CP DAI Sbjct: 587 DRARCTLCMACVSACPSQALRDQAE---------QPVLSMIERNCVQCGLCETTCPEDAI 637 Query: 119 VEGPNFEFATETRQ 132 P + RQ Sbjct: 638 ALVPRLNLSAGARQ 651 Score = 40.5 bits (93), Expect = 0.090, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 7/55 (12%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C+ C +C A AIT + + C+ CG C ACP A+ Sbjct: 334 VGCEACVQVCSAAAITSQWQDGRGSVH-------VAPNLCVGCGACTMACPTGAL 381 Score = 37.4 bits (85), Expect = 0.60, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 18/48 (37%) Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + G + R ID+ +C C C +ACP DAI Sbjct: 179 WPVHVGELAQVGGWLGAFDVQWRSRNPIDLDRCTRCNACIDACPEDAI 226 Score = 35.5 bits (80), Expect = 2.3, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 1/66 (1%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-IDMI 101 S R + E C+ C LCE CP AI + G R+ V + + Sbjct: 602 PSQALRDQAEQPVLSMIERNCVQCGLCETTCPEDAIALVPRLNLSAGARQPVTLNATEPF 661 Query: 102 KCIYCG 107 CI CG Sbjct: 662 HCIRCG 667 >gi|291550262|emb|CBL26524.1| Iron only hydrogenase large subunit, C-terminal domain [Ruminococcus torques L2-14] Length = 434 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 7/78 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQ 110 +++CI C C+++CP AI + P + R ID KC+ CG+C Sbjct: 79 FIDQDKCIKCGKCKSVCPYDAIAKKERPCKKACGVNAITSDKLGRAYIDADKCVSCGMCM 138 Query: 111 EACPVDAI-VEGPNFEFA 127 +CP AI + F+ A Sbjct: 139 VSCPFGAISDKSQIFQLA 156 Score = 41.2 bits (95), Expect = 0.053, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 13/64 (20%) Query: 57 PNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 C C C+ +CP AI++ +G ID KCI CG C+ CP Sbjct: 48 YEVSNVCKGCLAHPCQEVCPRGAISMVNGKSF-----------IDQDKCIKCGKCKSVCP 96 Query: 115 VDAI 118 DAI Sbjct: 97 YDAI 100 >gi|255026848|ref|ZP_05298834.1| hypothetical protein LmonocytFSL_11906 [Listeria monocytogenes FSL J2-003] Length = 597 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 3/85 (3%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E+ + + + Y ++CI C C C + R + D Sbjct: 124 ERPYREKGYLNDFSHPFYRYDPDQCILCGRCVEACQQVQVNETLSIDWERSQPRVIWDDD 183 Query: 99 DMIK---CIYCGLCQEACPVDAIVE 120 C+ CGLC CP +A++E Sbjct: 184 RPANLSSCVSCGLCATVCPCNALME 208 Score = 38.5 bits (88), Expect = 0.29, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 9/69 (13%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCI 104 R N C C C+ + + +E R + Y D +CI Sbjct: 90 RILENHLLYCTVCDNNNGNCKVHNTTELLGVEKQERPYREKGYLNDFSHPFYRYDPDQCI 149 Query: 105 YCGLCQEAC 113 CG C EAC Sbjct: 150 LCGRCVEAC 158 >gi|167756750|ref|ZP_02428877.1| hypothetical protein CLORAM_02297 [Clostridium ramosum DSM 1402] gi|237734469|ref|ZP_04564950.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|167702925|gb|EDS17504.1| hypothetical protein CLORAM_02297 [Clostridium ramosum DSM 1402] gi|229382289|gb|EEO32380.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 263 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 34/105 (32%), Positives = 42/105 (40%), Gaps = 12/105 (11%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + A CLR T+ P++K + E ALR N CI C +C C Sbjct: 168 PDLCQACGKCLRVCPNNVITL-IPYQKQAVVKCNSNEPALRARKNCAVSCIGCGICARNC 226 Query: 74 PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 P AI IE+ ID KC CGLC+E CP I Sbjct: 227 PNNAIIIENSLA-----------RIDYTKCTNCGLCKEKCPRKCI 260 Score = 37.8 bits (86), Expect = 0.56, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 5/69 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK-----CIYCGLCQEAC 113 + C AC C +CP IT+ + + + K CI CG+C C Sbjct: 167 NPDLCQACGKCLRVCPNNVITLIPYQKQAVVKCNSNEPALRARKNCAVSCIGCGICARNC 226 Query: 114 PVDAIVEGP 122 P +AI+ Sbjct: 227 PNNAIIIEN 235 >gi|150392337|ref|YP_001322386.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149952199|gb|ABR50727.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Alkaliphilus metalliredigens QYMF] Length = 1171 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 30/129 (23%), Positives = 44/129 (34%), Gaps = 34/129 (26%) Query: 57 PNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR-----------TVRYDIDM 100 E+CI C C +CP AI + + +G + R + Sbjct: 683 EWQMEKCIQCNQCAYVCPHAAIRPFLVDEKEAAQAPEGFKTLKAMGKEFNGLQYRLQVST 742 Query: 101 IKCIYCGLCQEACPVD---AIVEGP----------NFEFATETRQELYYDKERLLNNGDR 147 + C CG C + CP AI P N+E+AT DK L N G Sbjct: 743 LDCTGCGNCVDICPAPKGKAIEMKPVEPQVEAQKENWEYATT-----LTDKSELTNIGTV 797 Query: 148 WESEIVRNI 156 S+ + + Sbjct: 798 KGSQFAQPL 806 >gi|294495829|ref|YP_003542322.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanohalophilus mahii DSM 5219] gi|292666828|gb|ADE36677.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanohalophilus mahii DSM 5219] Length = 369 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 29/71 (40%), Gaps = 12/71 (16%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 E C C C +CP A+ I + ID KCI CG C CP Sbjct: 188 HPEIDAEICNGCATCVEVCPCDAMEINNDNIS----------TIDDDKCIGCGECMTVCP 237 Query: 115 VDAIVEGPNFE 125 V+AI G N+E Sbjct: 238 VEAI--GFNYE 246 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 15/37 (40%) Query: 87 HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + + +ID C C C E CP DA+ + Sbjct: 180 KMEQHKGLHPEIDAEICNGCATCVEVCPCDAMEINND 216 >gi|73540750|ref|YP_295270.1| ferredoxin [Ralstonia eutropha JMP134] gi|72118163|gb|AAZ60426.1| Electron transport complex, RnfABCDGE type, B subunit [Ralstonia eutropha JMP134] Length = 248 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 23/64 (35%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C LC CP AI + + I C C LC CPVD I Sbjct: 83 DESLCIGCTLCIQACPVDAIAGAAKQ----------MHTIIPELCTGCDLCVPPCPVDCI 132 Query: 119 VEGP 122 P Sbjct: 133 DMVP 136 Score = 37.8 bits (86), Expect = 0.52, Method: Composition-based stats. Identities = 14/22 (63%), Positives = 15/22 (68%) Query: 97 DIDMIKCIYCGLCQEACPVDAI 118 ID CI C LC +ACPVDAI Sbjct: 81 RIDESLCIGCTLCIQACPVDAI 102 >gi|325570424|ref|ZP_08146201.1| electron transport complex protein RnfC [Enterococcus casseliflavus ATCC 12755] gi|325156634|gb|EGC68811.1| electron transport complex protein RnfC [Enterococcus casseliflavus ATCC 12755] Length = 445 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 36/109 (33%), Gaps = 10/109 (9%) Query: 13 LKEFVGA-------FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 L +F G L K+ T+ P KG S + + E CI Sbjct: 313 LIDFAGGFQGAPSKLILGGPMMGKSVKTLKVPVTKG--SNGIVVFNEETDWLYAENPCIR 370 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 C C CP + + +E G ++ CI CG C CP Sbjct: 371 CNKCVEACPMRLMPMEIDQFYRAGD-YQKCEELLAEACINCGACTFVCP 418 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 4/41 (9%) Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLN 143 CI C C EACP+ + E R Y E LL Sbjct: 368 CIRCNKCVEACPMRLMPM----EIDQFYRAGDYQKCEELLA 404 >gi|260430223|ref|ZP_05784197.1| 4Fe-4S ferredoxin, iron-sulfur binding [Citreicella sp. SE45] gi|260418695|gb|EEX11951.1| 4Fe-4S ferredoxin, iron-sulfur binding [Citreicella sp. SE45] Length = 461 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 33/119 (27%), Gaps = 14/119 (11%) Query: 23 CLRYFFKAKTTINYPFE-KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 R + +P L C C C ++CP+ A+ Sbjct: 277 TRRQISRQAARALHPEGGTLPLPAGAPYGAVLV----DTGACTLCLSCVSLCPSGALGDN 332 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140 + C+ CG+C CP DAI P F + ++E Sbjct: 333 PD---------LPQLRFQEDACLQCGICATVCPEDAITLDPRFNLNESALSQEVLNEEE 382 Score = 38.9 bits (89), Expect = 0.24, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 11/55 (20%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C +CP AI + ID + C CG C ACP A+ Sbjct: 89 TGCTRCLDLCPTGAILPDGD-----------HVTIDPMICAGCGACSAACPSGAV 132 >gi|229826121|ref|ZP_04452190.1| hypothetical protein GCWU000182_01486 [Abiotrophia defectiva ATCC 49176] gi|229789694|gb|EEP25808.1| hypothetical protein GCWU000182_01486 [Abiotrophia defectiva ATCC 49176] Length = 507 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 6/66 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQEA 112 ++ CI C C +CP A+ I+ P + DID KC+ CG C Sbjct: 150 DQDVCIKCGKCAEVCPYHAVIIQERPCAAACGMDAIHSDVHGKADIDYEKCVSCGQCLVN 209 Query: 113 CPVDAI 118 CP AI Sbjct: 210 CPFGAI 215 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 20/66 (30%), Gaps = 7/66 (10%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-------IDMIKCIYCGLCQEACPV 115 C C + P + V D ID CI CG C E CP Sbjct: 107 CNGCTEKRVFVTDGCQGCLAHPCVEVCPKTCVSLDRTNGRSKIDQDVCIKCGKCAEVCPY 166 Query: 116 DAIVEG 121 A++ Sbjct: 167 HAVIIQ 172 >gi|160942428|ref|ZP_02089735.1| hypothetical protein CLOBOL_07312 [Clostridium bolteae ATCC BAA-613] gi|158434680|gb|EDP12447.1| hypothetical protein CLOBOL_07312 [Clostridium bolteae ATCC BAA-613] Length = 624 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 28/69 (40%), Gaps = 10/69 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 ++ Y EE C C C CPA AI E + I +CI CG C EA Sbjct: 565 MKTYIIDEETCRGCSKCAKGCPAGAIAGELK----------HVFTIRQQQCIKCGACAEA 614 Query: 113 CPVDAIVEG 121 CP A+ Sbjct: 615 CPFGAVHIQ 623 >gi|90417026|ref|ZP_01224955.1| electron transport complex protein RnfC [marine gamma proteobacterium HTCC2207] gi|90331373|gb|EAS46617.1| electron transport complex protein RnfC [marine gamma proteobacterium HTCC2207] Length = 596 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 21/122 (17%), Positives = 33/122 (27%), Gaps = 16/122 (13%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 +A + CI C +C CP + + ++ CI CG C Sbjct: 358 YAEIPDDEPAQPCIRCGMCAEACPVS-LLPQQLFWYAQAQEHDRLEAHNLFDCIECGACS 416 Query: 111 EACPVDAIVEGPNFEFA--------------TETRQELYYDKERLLNNGDRWESEIVRNI 156 CP I + A R + KER+ E++ Sbjct: 417 YVCP-SNIPLVQYYRAAKGEIRQAREEKVKSDHARDRFEFHKERIEQAEREKEAKRAARR 475 Query: 157 VT 158 Sbjct: 476 EA 477 >gi|92114035|ref|YP_573963.1| 4Fe-4S ferredoxin, iron-sulfur binding [Chromohalobacter salexigens DSM 3043] gi|91797125|gb|ABE59264.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Chromohalobacter salexigens DSM 3043] Length = 552 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 9/73 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C C A+CP QA++ ++ + C+ CGLC+ ACP I Sbjct: 416 DTDNCTLCMACVAVCPTQALSSPG---------QSPALNFQESACVQCGLCETACPEQVI 466 Query: 119 VEGPNFEFATETR 131 P F A E R Sbjct: 467 ALHPGFMAAPEPR 479 Score = 41.2 bits (95), Expect = 0.053, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 37/105 (35%), Gaps = 26/105 (24%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 C C +CPA AI+ ID +C G C ACP AI + Sbjct: 193 CTRCLDVCPADAISSVKQEIV-----------IDPFRCHGAGSCTSACPTGAIR----YA 237 Query: 126 FATETRQELYYDKERLL-----NNGD----RWESEIVRNIVTDSP 161 T R + Y RLL GD R+ + + D+P Sbjct: 238 LPTPERLDDYIT--RLLATYHAEGGDTAVVRFLDQETQASEPDAP 280 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 9/22 (40%), Positives = 10/22 (45%) Query: 97 DIDMIKCIYCGLCQEACPVDAI 118 DID C C C CP A+ Sbjct: 414 DIDTDNCTLCMACVAVCPTQAL 435 >gi|150390845|ref|YP_001320894.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF] gi|149950707|gb|ABR49235.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF] Length = 582 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 10/68 (14%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 AL + EE+CI C LC C AI E+ + I KCI CG+C Sbjct: 522 KALLTHNILEEKCINCGLCLRKCRLDAIIREN----------HGAHRIQTEKCIQCGVCL 571 Query: 111 EACPVDAI 118 +ACPV+A+ Sbjct: 572 DACPVNAV 579 >gi|119714883|ref|YP_921848.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Nocardioides sp. JS614] gi|119535544|gb|ABL80161.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Nocardioides sp. JS614] Length = 544 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 26/62 (41%), Gaps = 3/62 (4%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C C +CP Q I G T + ID CI CG C ACPVDAI Sbjct: 7 QSCCEDAACVTVCPVQCIRPRPG---DPDFESTEQLYIDPSSCIDCGACATACPVDAIYP 63 Query: 121 GP 122 G Sbjct: 64 GD 65 >gi|295092507|emb|CBK78614.1| Iron only hydrogenase large subunit, C-terminal domain [Clostridium cf. saccharolyticum K10] Length = 507 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQ 110 +++CI C C+ +C AI I+ P + DID KC+ CG C Sbjct: 148 YIDQDKCIKCGKCKEVCGYNAIIIQERPCAAACGMDAIHSDVNGKADIDYDKCVSCGQCL 207 Query: 111 EACPVDAI 118 CP AI Sbjct: 208 VNCPFGAI 215 Score = 38.2 bits (87), Expect = 0.36, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 7/66 (10%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-------IDMIKCIYCGLCQEACPV 115 C AC + P + V D ID KCI CG C+E C Sbjct: 107 CNACHEKRVYVTDGCQGCLAHPCVEVCPKGAVTLDRTNGRSYIDQDKCIKCGKCKEVCGY 166 Query: 116 DAIVEG 121 +AI+ Sbjct: 167 NAIIIQ 172 >gi|253579343|ref|ZP_04856613.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849441|gb|EES77401.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 289 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 12/99 (12%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 G E+ CI+C +C C +A+ + G ++D KC Sbjct: 149 ENDVGIKGGMNIEYKEDDCISCGVCVKACRQEALKMVDGK-----------IELDAQKCN 197 Query: 105 YCGLCQEACPVDAIVEGPNFEFA-TETRQELYYDKERLL 142 +CG C ++CPVDA P + + T Y E LL Sbjct: 198 HCGRCVKSCPVDAWKGTPGYIVSFGGTFGNNIYKGEELL 236 Score = 34.7 bits (78), Expect = 4.0, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 16/45 (35%) Query: 78 ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 G + + + CI CG+C +AC +A+ Sbjct: 142 NNCLKAEENDVGIKGGMNIEYKEDDCISCGVCVKACRQEALKMVD 186 >gi|219849508|ref|YP_002463941.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [Chloroflexus aggregans DSM 9485] gi|219543767|gb|ACL25505.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Chloroflexus aggregans DSM 9485] Length = 1192 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 26/92 (28%), Gaps = 16/92 (17%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPR 85 T+ + A+ CI C C +CP A Sbjct: 670 PTGTTKWEKRNIAIEIPVWDPNICIQCNKCVFVCPHATIRAKVYPEEALAGAPEGFQSAP 729 Query: 86 CHDGTRRTVRY--DIDMIKCIYCGLCQEACPV 115 RY + C CGLC EACPV Sbjct: 730 ARFKEFPGQRYTLQVAPEDCTGCGLCVEACPV 761 >gi|13474498|ref|NP_106067.1| NAD-dependent formate dehydrogenase alpha subunit [Mesorhizobium loti MAFF303099] gi|14025252|dbj|BAB51853.1| NAD-dependent formate dehydrogenase alpha subunit [Mesorhizobium loti MAFF303099] Length = 970 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 27/81 (33%), Gaps = 3/81 (3%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T G + D +C+ CG C + Sbjct: 182 YFTYDPAQCIVCSRCVRACEEVQGTFALTIEGRGFESRMVAGMHEDFIASECVSCGACVQ 241 Query: 112 ACPVDAIVEGPNFEFATETRQ 132 ACP DA+ E E R Sbjct: 242 ACPTDALREKTVLEKGMPERS 262 >gi|229031228|ref|ZP_04187235.1| formate dehydrogenase [Bacillus cereus AH1271] gi|228730095|gb|EEL81068.1| formate dehydrogenase [Bacillus cereus AH1271] Length = 979 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+E + Y +CIAC C +C + R Sbjct: 123 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 180 Query: 93 TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120 + +I+ C+ CG C CP +A++E Sbjct: 181 VIWDEGVNINDSSCVSCGQCVTICPCNALME 211 Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 91 RLLGNHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|221126279|ref|XP_002164598.1| PREDICTED: similar to predicted protein [Hydra magnipapillata] Length = 1399 Score = 50.9 bits (120), Expect = 6e-05, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 11/61 (18%) Query: 59 GEERCIACKLCEAICP---AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 ++ CI C C C QAIT E + +++ +C+ C LC CPV Sbjct: 850 NQDNCIQCGRCHIACEDTSHQAITFEKDGK--------RHFEVKEDECVGCNLCVTVCPV 901 Query: 116 D 116 Sbjct: 902 P 902 >gi|281356167|ref|ZP_06242660.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Victivallis vadensis ATCC BAA-548] gi|281317536|gb|EFB01557.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Victivallis vadensis ATCC BAA-548] Length = 1174 Score = 50.9 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 28/108 (25%), Gaps = 26/108 (24%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA--------------- 77 T FEK +P +CI C C CP A Sbjct: 665 TATSRFEKRGIAPSVPKW--------DSAKCIQCNQCVMACPHAAIRAKLIKEADLAAAP 716 Query: 78 -ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP--VDAIVEGP 122 + R + + C CG+C E CP AI Sbjct: 717 ATFNVVDAKAVKEPGLKFRLQVFVEDCTGCGVCVETCPAKEKAITMTH 764 >gi|228966460|ref|ZP_04127513.1| formate dehydrogenase [Bacillus thuringiensis serovar sotto str. T04001] gi|228793182|gb|EEM40732.1| formate dehydrogenase [Bacillus thuringiensis serovar sotto str. T04001] Length = 979 Score = 50.9 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+E + Y +CIAC C +C + R Sbjct: 123 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 180 Query: 93 TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120 + +I+ C+ CG C CP +A++E Sbjct: 181 VIWDEGVNINDSSCVSCGQCVTICPCNALME 211 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 91 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|228928622|ref|ZP_04091658.1| formate dehydrogenase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228947188|ref|ZP_04109482.1| formate dehydrogenase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229123087|ref|ZP_04252294.1| formate dehydrogenase [Bacillus cereus 95/8201] gi|228660381|gb|EEL16014.1| formate dehydrogenase [Bacillus cereus 95/8201] gi|228812435|gb|EEM58762.1| formate dehydrogenase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228830941|gb|EEM76542.1| formate dehydrogenase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 954 Score = 50.9 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+E + Y +CIAC C +C + R Sbjct: 98 HQKYPYE--PKVDASEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 155 Query: 93 TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120 + +I+ C+ CG C CP +A++E Sbjct: 156 VIWDEGVNINDSSCVSCGQCVTICPCNALME 186 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 66 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDASEVDMTHPFYRYDPNQ 125 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 126 CIACGQCVEVC 136 >gi|83588937|ref|YP_428946.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Moorella thermoacetica ATCC 39073] gi|83571851|gb|ABC18403.1| Pyruvate:ferredoxin (flavodoxin) oxidoreductase [Moorella thermoacetica ATCC 39073] Length = 1171 Score = 50.9 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 31/117 (26%), Gaps = 20/117 (17%) Query: 31 KTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88 + P + + A+ E CI C C +CP AI Sbjct: 652 PVSTFTPDGVFPVGTTKYEKRGIAVNIPQWQPENCIQCNQCSLVCPHAAIRPYLAKPADL 711 Query: 89 GTRRTV----------------RYDIDMIKCIYCGLCQEACP--VDAIVEGPNFEFA 127 R + + C CG C + CP V A+ P E Sbjct: 712 AGAPETFVTKDAIGKEAAGLKFRIQVSPLDCTGCGNCADVCPAKVKALTMVPLEEVT 768 >gi|303248776|ref|ZP_07335028.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio fructosovorans JJ] gi|302489863|gb|EFL49792.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio fructosovorans JJ] Length = 376 Score = 50.9 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 11/82 (13%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 + + R+ ++CI C C A+CPA A T++ I+ CI CG Sbjct: 187 KQDQHCVRFVVEPKKCIGCGQCVAVCPAGAATMQDKKAF-----------IEKAICIGCG 235 Query: 108 LCQEACPVDAIVEGPNFEFATE 129 C CP A+ + E Sbjct: 236 ECLTVCPKKAMRIDWHTEIVPF 257 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 18/43 (41%) Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + PR + VR+ ++ KCI CG C CP A Sbjct: 179 MGCAPRAGKQDQHCVRFVVEPKKCIGCGQCVAVCPAGAATMQD 221 >gi|282882399|ref|ZP_06291027.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Peptoniphilus lacrimalis 315-B] gi|281297820|gb|EFA90288.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Peptoniphilus lacrimalis 315-B] Length = 1178 Score = 50.9 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 40/123 (32%), Gaps = 30/123 (24%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR----------- 91 TS + A+ E CI C C +CP I + + Sbjct: 670 TSKYEKRGIAVNVPHWKIENCIQCNQCSLVCPHAVIRPFLLDKEEAKKKPETFETMSARG 729 Query: 92 -----RTVRYDIDMIKCIYCGLCQEACP--VDAIVEGP----------NFEFATE--TRQ 132 R I + C CG C + CP A+V P N+EFAT ++Q Sbjct: 730 KGLTDYEFRIQISPLDCTGCGNCAQVCPAKEKALVMTPYEKELEVQAINWEFATTVKSKQ 789 Query: 133 ELY 135 + Sbjct: 790 DNI 792 >gi|294898536|ref|XP_002776267.1| pyruvate:ferredoxin oxidoreductase, putative [Perkinsus marinus ATCC 50983] gi|239883169|gb|EER08083.1| pyruvate:ferredoxin oxidoreductase, putative [Perkinsus marinus ATCC 50983] Length = 897 Score = 50.9 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 34/120 (28%), Gaps = 19/120 (15%) Query: 31 KTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAICPA------------- 75 + P + + AL ++C C C AICP Sbjct: 527 PVSSFDPRGHYPPATTQYEKRGVALTIPIVDMDKCTQCNKCSAICPHAAIRPFLISQLEA 586 Query: 76 ----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 +A + +D R + C C C ACP +A+ P + R Sbjct: 587 DVAPKAFDMRMAKGGNDVAGMMYRIQVAPEDCTGCEACSWACPDNALTMTPLEDVVEVQR 646 >gi|294886221|ref|XP_002771617.1| pyruvate:ferredoxin oxidoreductase/NADPH-cytochrome P450, putative [Perkinsus marinus ATCC 50983] gi|239875323|gb|EER03433.1| pyruvate:ferredoxin oxidoreductase/NADPH-cytochrome P450, putative [Perkinsus marinus ATCC 50983] Length = 1831 Score = 50.9 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 34/120 (28%), Gaps = 19/120 (15%) Query: 31 KTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAICPA------------- 75 + P + + AL ++C C C AICP Sbjct: 714 PVSSFDPRGHYPPATTQYEKRGVALTIPIVDMDKCTQCNKCSAICPHAAIRPFLISQLEA 773 Query: 76 ----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 +A + +D R + C C C ACP +A+ P + R Sbjct: 774 DVAPKAFDMRMAKGGNDVAGMMYRIQVAPEDCTGCEACSWACPDNALTMTPLEDVVEVQR 833 >gi|253702589|ref|YP_003023778.1| molybdopterin oxidoreductase [Geobacter sp. M21] gi|251777439|gb|ACT20020.1| molybdopterin oxidoreductase [Geobacter sp. M21] Length = 821 Score = 50.9 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 29/101 (28%), Gaps = 7/101 (6%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 L Y T + EK + + + RCI C C IC Sbjct: 113 LTFEY---KVNTNRFVDEKFNHAIDYDNPLI----ERDMNRCIHCGKCARICDEIVSYGA 165 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + + C +CG C CPV A+ P Sbjct: 166 YTFINRGIEAKMGTEFDGPLNCEFCGSCVSVCPVGALNSRP 206 >gi|197117888|ref|YP_002138315.1| electron transfer flavoprotein subunit alpha [Geobacter bemidjiensis Bem] gi|197087248|gb|ACH38519.1| electron transfer flavoprotein, alpha subunit [Geobacter bemidjiensis Bem] Length = 442 Score = 50.9 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 29/100 (29%), Positives = 38/100 (38%), Gaps = 22/100 (22%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACK-LCEAICPAQAITIESGPRCHDGTRRTVRYD 97 E + RG+ A+ E RCIAC C++ CP AI + Sbjct: 3 EAVKKPKKPRGKAAVL-----EGRCIACGARCQSACPVDAIQMNEAGEPV---------- 47 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 ID KCI C C + CP AI E A ++ D Sbjct: 48 IDASKCIGCVKCVKVCPAQAI------EMAFTPEEKRILD 81 >gi|328473707|gb|EGF44542.1| iron-sulfur cluster-binding protein [Vibrio parahaemolyticus 10329] Length = 553 Score = 50.9 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 35/102 (34%), Gaps = 9/102 (8%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + C C C A+CP +A+ + ++ CI CGLC++ACP Sbjct: 415 CENKDCTLCMSCVAVCPTRALHTDG---------QSPSLKFVEQDCIQCGLCEKACPEKV 465 Query: 118 IVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 + + E RQ+ E R + D Sbjct: 466 LTLTTRMNWVKEERQKAVVIHEEKAAECIRCHKPFAPQSMID 507 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 6/54 (11%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 C+ C CPA A++ E + R +I+ C G C ACP +AI Sbjct: 186 CERCVDACPAGALSSEGSDKTGH------RIEINPYLCQGVGTCATACPTEAIH 233 >gi|319782785|ref|YP_004142261.1| dihydroorotate dehydrogenase [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317168673|gb|ADV12211.1| dihydroorotate dehydrogenase family protein [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 437 Score = 50.9 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 6/78 (7%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI C C A S +++ +C+ Sbjct: 330 QYLNLNYVAKAHIDQDACIKCGRCHI-----ACEDTSHQAITSMVDGVRHFEVIEAECVG 384 Query: 106 CGLCQEACPV-DAIVEGP 122 C LC CPV + I P Sbjct: 385 CNLCVNVCPVENCITMEP 402 >gi|312959250|ref|ZP_07773768.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas fluorescens WH6] gi|311286510|gb|EFQ65073.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas fluorescens WH6] Length = 320 Score = 50.9 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 28/75 (37%), Gaps = 10/75 (13%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 RGE + E CI C C CP AI + + + + +C C Sbjct: 66 RGEAPAQVAYIREAECIGCTKCIQACPVDAIVGAAK----------LMHTVISDECTGCD 115 Query: 108 LCQEACPVDAIVEGP 122 LC CPVD I P Sbjct: 116 LCVAPCPVDCIEMRP 130 >gi|307718915|ref|YP_003874447.1| hypothetical protein STHERM_c12330 [Spirochaeta thermophila DSM 6192] gi|306532640|gb|ADN02174.1| hypothetical protein STHERM_c12330 [Spirochaeta thermophila DSM 6192] Length = 527 Score = 50.9 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 26/65 (40%), Gaps = 6/65 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQEA 112 ERCI C LCE +CP AI P ID CI CG C +A Sbjct: 191 DYERCINCGLCERVCPFHAIVRIPVPCEEVCPVGAIEKGEDGVARIDRGACILCGKCLKA 250 Query: 113 CPVDA 117 CP A Sbjct: 251 CPFGA 255 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 5/94 (5%) Query: 29 KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88 + + PFE P A R + ++C+ A ++G Sbjct: 126 RGSVDLAVPFELDDGFPLHMITEA--CNACEGARFMVTEVCQGCV---ARPCKTGCPRGA 180 Query: 89 GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + R ID +CI CGLC+ CP AIV P Sbjct: 181 ISIVRGRASIDYERCINCGLCERVCPFHAIVRIP 214 >gi|288575184|ref|ZP_06393540.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568466|gb|EFC90024.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 288 Score = 50.9 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 11/73 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E+C+ C C CP +AI++ G ID CI CG C CP AI Sbjct: 149 DDEKCVGCGRCFRNCPVKAISMTGGKAV-----------IDKDVCIGCGECLTVCPASAI 197 Query: 119 VEGPNFEFATETR 131 + R Sbjct: 198 SLDWRTDVVQFHR 210 Score = 40.1 bits (92), Expect = 0.10, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 18/42 (42%) Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 + P + + R +D KC+ CG C CPV AI Sbjct: 130 MGCAPAEGKKEQHSARMSVDDEKCVGCGRCFRNCPVKAISMT 171 >gi|218898664|ref|YP_002447075.1| molybdopterin oxidoreductase family protein [Bacillus cereus G9842] gi|218542322|gb|ACK94716.1| molybdopterin oxidoreductase family protein [Bacillus cereus G9842] Length = 979 Score = 50.9 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+E + Y +CIAC C +C + R Sbjct: 123 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 180 Query: 93 TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120 + +I+ C+ CG C CP +A++E Sbjct: 181 VIWDEGVNINDSSCVSCGQCVTICPCNALME 211 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 91 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|162147298|ref|YP_001601759.1| dihydropyrimidine dehydrogenase [Gluconacetobacter diazotrophicus PAl 5] gi|161785875|emb|CAP55446.1| Dihydroorotate dehydrogenase [Gluconacetobacter diazotrophicus PAl 5] Length = 426 Score = 50.9 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 5/66 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117 +E CI C LC C + + R Y + C+ C LC CPV D Sbjct: 341 DQESCIQCGLCHIACEDTSHQAIARTRVEG----RRHYAVIDEACVGCNLCAHVCPVDDC 396 Query: 118 IVEGPN 123 I P Sbjct: 397 ITMVPQ 402 >gi|327393782|dbj|BAK11204.1| electron transport complex protein RnfC [Pantoea ananatis AJ13355] Length = 814 Score = 50.9 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 3/110 (2%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 E+ CI C C CPA+ + + G R + CI CG C C Sbjct: 368 MGNDEQEQSCIRCSACADACPAKLLPQQLYWYSKGGDHDKAR-AHHIDDCIECGACAYVC 426 Query: 114 PVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 P I + + + + +R L R+E+ R + + R Sbjct: 427 P-SNIPLVQYYRQEKAELRAIDLEAKRTLEAKARFEARQAR-LEREKQAR 474 >gi|260893278|ref|YP_003239375.1| methyl-viologen-reducing hydrogenase delta subunit [Ammonifex degensii KC4] gi|260865419|gb|ACX52525.1| methyl-viologen-reducing hydrogenase delta subunit [Ammonifex degensii KC4] Length = 810 Score = 50.9 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 29/96 (30%), Gaps = 7/96 (7%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA-------ITIESGPR 85 T + E F ++C+ C C AICP + I+ Sbjct: 222 TRTWVKEVKKDGGNFLVTLWQEPQFVNSQKCVECGRCAAICPVEVENDFDMGISRRKAAY 281 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 Y ID C CG C ACP AI Sbjct: 282 KPHPMALPPGYTIDPNSCTRCGACVGACPAQAIDLQ 317 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 23/72 (31%), Gaps = 10/72 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++C C C +CP I Y C CGLC ACP AI Sbjct: 608 DPQKCSGCGFCAKVCPHGVIQRREDG----------TYYTSPAFCQGCGLCTTACPTGAI 657 Query: 119 VEGPNFEFATET 130 E + E Sbjct: 658 RITNFNEESVEK 669 >gi|260434027|ref|ZP_05787998.1| iron-sulfur cluster-binding protein [Silicibacter lacuscaerulensis ITI-1157] gi|260417855|gb|EEX11114.1| iron-sulfur cluster-binding protein [Silicibacter lacuscaerulensis ITI-1157] Length = 651 Score = 50.9 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 9/82 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C C C ++CP+ A+ + + C+ CGLC+ CP AI Sbjct: 499 DTEACTLCLSCVSLCPSGALIDNPD---------LPQLNYQQDACLQCGLCKTICPESAI 549 Query: 119 VEGPNFEFATETRQELYYDKER 140 P + + ++E Sbjct: 550 TLVPELDLSDRALSPRVLNEEE 571 Score = 38.2 bits (87), Expect = 0.37, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 20/55 (36%), Gaps = 11/55 (20%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C ICP AIT ID + C CG C CP AI Sbjct: 277 VGCSNCLDICPTGAITPAGD-----------HVAIDPMVCAGCGECAALCPSTAI 320 >gi|229157143|ref|ZP_04285223.1| formate dehydrogenase [Bacillus cereus ATCC 4342] gi|228626207|gb|EEK82954.1| formate dehydrogenase [Bacillus cereus ATCC 4342] Length = 1022 Score = 50.9 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+E + Y +CIAC C +C + R Sbjct: 166 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 223 Query: 93 TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120 + +I+ C+ CG C CP +A++E Sbjct: 224 VIWDEGVNINDSSCVSCGQCVTICPCNALME 254 Score = 39.3 bits (90), Expect = 0.16, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 134 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 193 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 194 CIACGQCVEVC 204 >gi|153853057|ref|ZP_01994466.1| hypothetical protein DORLON_00451 [Dorea longicatena DSM 13814] gi|149753843|gb|EDM63774.1| hypothetical protein DORLON_00451 [Dorea longicatena DSM 13814] Length = 503 Score = 50.9 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 7/78 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDG------TRRTVRYDIDMIKCIYCGLCQ 110 +E+CI C C+++CP AI+ + P + R ++ KC+ CG+C Sbjct: 148 YIDQEKCIKCGKCKSVCPYDAISKKERPCAKACGVNAIENDKVGRAYVNPDKCVSCGMCM 207 Query: 111 EACPVDAI-VEGPNFEFA 127 CP AI + F+ A Sbjct: 208 VNCPFGAISDKSQIFQLA 225 Score = 42.0 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 13/64 (20%) Query: 57 PNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 C C C +CP AI++ +G ID KCI CG C+ CP Sbjct: 117 YEVSNMCKGCLAHPCMEVCPKGAISMVNGKSY-----------IDQEKCIKCGKCKSVCP 165 Query: 115 VDAI 118 DAI Sbjct: 166 YDAI 169 >gi|56965540|ref|YP_177274.1| dihydropyrimidine dehydrogenase [Bacillus clausii KSM-K16] gi|56911786|dbj|BAD66313.1| dihydropyrimidine dehydrogenase [Bacillus clausii KSM-K16] Length = 419 Score = 50.9 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 4/65 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117 + CI C C C A +G D +C+ C LC CPV+ A Sbjct: 338 NRDVCINCNKCHISCEDTAHQCIGRYTDENGAPYLKV---DEDECVGCNLCSIVCPVEGA 394 Query: 118 IVEGP 122 I P Sbjct: 395 IAMVP 399 >gi|47568933|ref|ZP_00239625.1| formate dehydrogenase, alpha subunit [Bacillus cereus G9241] gi|47554417|gb|EAL12776.1| formate dehydrogenase, alpha subunit [Bacillus cereus G9241] Length = 979 Score = 50.9 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+E + Y +CIAC C +C + R Sbjct: 123 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 180 Query: 93 TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120 + +I+ C+ CG C CP +A++E Sbjct: 181 VIWDEGVNINDSSCVSCGQCVTICPCNALME 211 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 91 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|256752102|ref|ZP_05492969.1| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter ethanolicus CCSD1] gi|256749011|gb|EEU62048.1| Cobyrinic acid ac-diamide synthase [Thermoanaerobacter ethanolicus CCSD1] Length = 291 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 42/108 (38%), Gaps = 22/108 (20%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE-------ERCIACKLCEAICPA 75 L K K + E + + +GE +R G+ ++CI C LCE +C Sbjct: 21 TLSTIVKNKIMADCDVEAPNLNIVLQGEIIEKRDFYGKETAVIDKDKCIECGLCEELCRF 80 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 AI+ ++++ C CGLC CPV+AI Sbjct: 81 DAISN---------------FEVNPYYCEGCGLCMYKCPVEAIKLIEE 113 >gi|217963307|ref|YP_002348985.1| formate dehydrogenase Alpha subunit [Listeria monocytogenes HCC23] gi|217332577|gb|ACK38371.1| formate dehydrogenase Alpha subunit [Listeria monocytogenes HCC23] gi|307572114|emb|CAR85293.1| formate dehydrogenase, alpha subunit [Listeria monocytogenes L99] Length = 995 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 29/84 (34%), Gaps = 3/84 (3%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 + + + + Y ++CI C C C + R + D Sbjct: 125 RPYREKGYLNDFSHPFYRYDPDQCILCGRCVEACQQVQVNETLSIDWERSQPRVIWDDDR 184 Query: 100 MIK---CIYCGLCQEACPVDAIVE 120 C+ CGLC CP +A++E Sbjct: 185 PANLSSCVSCGLCATVCPCNALME 208 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 9/69 (13%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCI 104 R N C C C+ + + +E R + Y D +CI Sbjct: 90 RILENHLLYCTVCDNNNGNCKVHNTTELLGVEKQDRPYREKGYLNDFSHPFYRYDPDQCI 149 Query: 105 YCGLCQEAC 113 CG C EAC Sbjct: 150 LCGRCVEAC 158 >gi|320159713|ref|YP_004172937.1| dihydroorotate dehydrogenase family protein [Anaerolinea thermophila UNI-1] gi|319993566|dbj|BAJ62337.1| dihydroorotate dehydrogenase family protein [Anaerolinea thermophila UNI-1] Length = 375 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 37/107 (34%), Gaps = 24/107 (22%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEE--------------RCIACKLCEAICPAQAI 78 T + E G +S + L +Y NG+ RC C +CE +C A+ Sbjct: 277 TARWLEEHGYSSLQEVKGKFLEKYRNGQRVVTSLEQVAVVDEARCKGCGVCERVCQYDAL 336 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 +D C CGLC CP DA+ +E Sbjct: 337 RAPQKQVA----------QVDAELCAACGLCVSVCPHDALSLRLRWE 373 >gi|296165553|ref|ZP_06848081.1| ferredoxin-NADP reductase [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295899092|gb|EFG78570.1| ferredoxin-NADP reductase [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 539 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 3/58 (5%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C +CP I GT ID + CI CG C +ACPVDAI Sbjct: 7 QSCCKDASCVPVCPVDCIRPVGATGEITGT---EMLYIDPVTCIDCGACVDACPVDAI 61 >gi|269959878|ref|ZP_06174255.1| conserved hypothetical protein [Vibrio harveyi 1DA3] gi|269835177|gb|EEZ89259.1| conserved hypothetical protein [Vibrio harveyi 1DA3] Length = 1451 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 14/79 (17%) Query: 59 GEERCIACKLCEAICPAQAITIE--------------SGPRCHDGTRRTVRYDIDMIKCI 104 RCI+C C C +A+ R H G+ + + C+ Sbjct: 670 DANRCISCGQCIQACRDKAVHGVLNFVCDKQGRPALRPDDRPHFGSNKNGLTLMGDSNCV 729 Query: 105 YCGLCQEACPVDAIVEGPN 123 CG C + CP A+V+ + Sbjct: 730 QCGACVQVCPTGAMVDSRD 748 >gi|269966134|ref|ZP_06180224.1| putative formate dehydrogenase, alpha subunit [Vibrio alginolyticus 40B] gi|269829281|gb|EEZ83525.1| putative formate dehydrogenase, alpha subunit [Vibrio alginolyticus 40B] Length = 1451 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 29/79 (36%), Gaps = 14/79 (17%) Query: 59 GEERCIACKLCEAICPAQAITIE--------------SGPRCHDGTRRTVRYDIDMIKCI 104 RCI+C C C +A+ R H G+ + + C+ Sbjct: 670 DANRCISCGQCIQACRDKAVHGVLNFVCDKQGRPALRPDDRPHFGSNKNGLTLMGDSNCV 729 Query: 105 YCGLCQEACPVDAIVEGPN 123 CG C + CP A+V+ + Sbjct: 730 QCGACVQVCPTGAMVDSRD 748 >gi|228986658|ref|ZP_04146788.1| formate dehydrogenase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228772989|gb|EEM21425.1| formate dehydrogenase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 1022 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+E + Y +CIAC C +C + R Sbjct: 166 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 223 Query: 93 TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120 + +I+ C+ CG C CP +A++E Sbjct: 224 VIWDEGVNINDSSCVSCGQCVTICPCNALME 254 Score = 39.3 bits (90), Expect = 0.16, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 134 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 193 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 194 CIACGQCVEVC 204 >gi|110802004|ref|YP_699826.1| [Fe] hydrogenase [Clostridium perfringens SM101] gi|110682505|gb|ABG85875.1| [Fe] hydrogenase [Clostridium perfringens SM101] Length = 490 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 7/68 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-------IDMIKCIYCGLCQE 111 E+C C C+ +CP AI P + + YD ID KCI CG C Sbjct: 133 DYEKCKECGKCKEVCPYNAIAEVKRPCMRACIPKALSYDVDSKKAVIDDSKCIQCGACVV 192 Query: 112 ACPVDAIV 119 CP AI+ Sbjct: 193 DCPFGAIM 200 Score = 41.6 bits (96), Expect = 0.036, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 3/70 (4%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + R I C + + + R+ ID KC CG C+E Sbjct: 90 IACDECPVNRFIVTDACRGCLAKKCRDSCNFEAINFDNRKCK---IDYEKCKECGKCKEV 146 Query: 113 CPVDAIVEGP 122 CP +AI E Sbjct: 147 CPYNAIAEVK 156 >gi|229162404|ref|ZP_04290367.1| formate dehydrogenase [Bacillus cereus R309803] gi|228621088|gb|EEK77951.1| formate dehydrogenase [Bacillus cereus R309803] Length = 975 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+E + Y +CIAC C +C + R Sbjct: 119 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 176 Query: 93 TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120 + +I+ C+ CG C CP +A++E Sbjct: 177 VIWDEGVNINDSSCVSCGQCVTICPCNALME 207 Score = 39.3 bits (90), Expect = 0.16, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 87 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 146 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 147 CIACGQCVEVC 157 >gi|217077618|ref|YP_002335336.1| NADP-reducing hydrogenase, subunit c [Thermosipho africanus TCF52B] gi|217037473|gb|ACJ75995.1| NADP-reducing hydrogenase, subunit c [Thermosipho africanus TCF52B] Length = 602 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 10/66 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L Y E+C+ C C +CP AI E ++ID C+ CG C E Sbjct: 539 LISYVINPEKCVGCTACARVCPVNAINGEVKK----------VHEIDQDACVKCGSCIEV 588 Query: 113 CPVDAI 118 C AI Sbjct: 589 CRFGAI 594 Score = 42.0 bits (97), Expect = 0.030, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 17/41 (41%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + + + Y I+ KC+ C C CPV+AI Sbjct: 525 HVRDKTCPAKKCKDLISYVINPEKCVGCTACARVCPVNAIN 565 >gi|197103275|ref|YP_002128653.1| NADPH-dependent glutamate synthase beta chain [Phenylobacterium zucineum HLK1] gi|196480551|gb|ACG80078.1| NADPH-dependent glutamate synthase beta chain [Phenylobacterium zucineum HLK1] Length = 546 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 21/63 (33%), Gaps = 3/63 (4%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 RC++C C A E RR Y +C C +C E CP AI Sbjct: 483 RRCLSCGNCFECDQCYAACPEQAIEKLGPGRR---YRYLYDRCTGCAVCFETCPCHAIEM 539 Query: 121 GPN 123 Sbjct: 540 IQE 542 >gi|119476464|ref|ZP_01616815.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB [marine gamma proteobacterium HTCC2143] gi|119450328|gb|EAW31563.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB [marine gamma proteobacterium HTCC2143] Length = 201 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 29/85 (34%), Gaps = 10/85 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E E+ E+ CI C C CP AI + + + Sbjct: 97 EAVPLDAEHGEENVKTVAYIREDECIGCTKCIQACPVDAILGAAKQ----------MHTV 146 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPN 123 + +C C LC E CPVD I P Sbjct: 147 IVSECTGCDLCVEPCPVDCIDMLPI 171 >gi|167039047|ref|YP_001662032.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [Thermoanaerobacter sp. X514] gi|300913362|ref|ZP_07130679.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter sp. X561] gi|307723624|ref|YP_003903375.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter sp. X513] gi|166853287|gb|ABY91696.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Thermoanaerobacter sp. X514] gi|300890047|gb|EFK85192.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter sp. X561] gi|307580685|gb|ADN54084.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter sp. X513] Length = 1175 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 53/143 (37%), Gaps = 31/143 (21%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTRRTV 94 G+ + RG + CI C C +CP AI T E +G + Sbjct: 667 PGTAAYEKRGIAVDVPEWQ-IDNCIQCNQCAFVCPHAAIRPFLLTEEEVKNAPEGFKVKK 725 Query: 95 -----------RYDIDMIKCIYCGLCQEACP--VDAIVEGP---------NFEFATE-TR 131 R + ++ C CG+C CP A+V P N+E+A + Sbjct: 726 AIGKGFEGLYYRIQVSVLDCTGCGVCANECPAKEKALVMKPLETQMEEAKNWEYAMTLSP 785 Query: 132 QELYYDKERLLNNGDRWESEIVR 154 +E +KE G ++E+ ++ Sbjct: 786 KENPMNKE--TVKGSQFETPLLE 806 >gi|294102533|ref|YP_003554391.1| protein of unknown function DUF362 [Aminobacterium colombiense DSM 12261] gi|293617513|gb|ADE57667.1| protein of unknown function DUF362 [Aminobacterium colombiense DSM 12261] Length = 377 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI C+ CE IC A A+ ++S + H + KCI C CQE CP +AI Sbjct: 312 NPDLCIRCRKCEEICAAHAVILDSNGKLHF----------NYNKCIRCFCCQEVCPNNAI 361 Query: 119 VEGP 122 Sbjct: 362 EFQK 365 >gi|261880705|ref|ZP_06007132.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Prevotella bergensis DSM 17361] gi|270332477|gb|EFA43263.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Prevotella bergensis DSM 17361] Length = 1201 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 16/102 (15%) Query: 28 FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA------------ 75 F T++ ++ G+++ RG A N E CI C C CP Sbjct: 658 FVKHGTVDGTWQNGTSAYEKRGVEAFVPQWN-PENCIQCNKCAYSCPHATIRPFVMDDEE 716 Query: 76 -QAITIESGPRCHDGTRRTVRYDIDMI--KCIYCGLCQEACP 114 +A+++ES + + + I + C+ CG C + CP Sbjct: 717 NKAVSLESLEMKAPKEMKGMHFRIQVSVMDCLGCGNCADVCP 758 >gi|145591121|ref|YP_001153123.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Pyrobaculum arsenaticum DSM 13514] gi|145282889|gb|ABP50471.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum arsenaticum DSM 13514] Length = 373 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 15/93 (16%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 +++CI C LC CPA A + C+ CGLC CPVDAI Sbjct: 84 QDKCIWCGLCAGYCPASAFEYVE----------RAVVRVKYDLCVDCGLCNSVCPVDAIK 133 Query: 120 E-----GPNFEFATETRQELYYDKERLLNNGDR 147 + +R+ L + + +GD Sbjct: 134 MPSLPDTYLADLVKTSRRPLKFICDYAFEDGDE 166 Score = 41.2 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 33/107 (30%), Gaps = 19/107 (17%) Query: 27 FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER--------CIACKLCEAICPAQAI 78 + T EK + P R + + G C C C +CP A+ Sbjct: 215 LGREGNTFYVKAEKAALEPGDRWQTRMLAIAVGMPAGVVRVKEGCTLCGACVNVCPTDAL 274 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 +I+ + CI CG+C E CP I E Sbjct: 275 SIKGHE-----------LRLVPALCIACGVCAEKCPEGVIEIRQQPE 310 >gi|114765412|ref|ZP_01444527.1| NAD-dependent formate dehydrogenase, alpha subunit [Pelagibaca bermudensis HTCC2601] gi|114542255|gb|EAU45285.1| NAD-dependent formate dehydrogenase, alpha subunit [Roseovarius sp. HTCC2601] Length = 973 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 29/82 (35%), Gaps = 4/82 (4%) Query: 55 RYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + +CI C C C A+TIE + D C+ CG C Sbjct: 186 YFTYDPSKCIVCSRCVRACEEVQGTFALTIEGRGFESRVSAGASGDDFLSSDCVSCGACV 245 Query: 111 EACPVDAIVEGPNFEFATETRQ 132 +ACP + E E T R+ Sbjct: 246 QACPTATLQEKSVAELGTPDRE 267 >gi|94265001|ref|ZP_01288771.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium MLMS-1] gi|93454548|gb|EAT04829.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium MLMS-1] Length = 668 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 18/87 (20%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C+ C C +CP A I+ R C+ CGLC ACP AI Sbjct: 495 NDYCVKCLNCVRLCPYDAPRIDRTARVP------------AEHCLACGLCYGACPTGAIR 542 Query: 120 EGPNFEFATETRQELYYDKERLLNNGD 146 N + ++L +RLL D Sbjct: 543 LQNN------SPEQLAASSQRLLAELD 563 >gi|21539315|gb|AAM53401.1| pyruvate:ferredoxin oxidoreductase [Mastigamoeba balamuthi] Length = 1202 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 29/119 (24%), Positives = 42/119 (35%), Gaps = 23/119 (19%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTR--------RTV 94 RG + N E+C+ C C +CP I + E G Sbjct: 689 RGIAESVPHWN-HEKCVQCNQCSFVCPHAVIRSYQISEEEMKNAPAGFDTLKSRKPGYRF 747 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGP---NFEFATETR---QELYYDKERLLNNGDR 147 R ++ + C C +C E CPV + P FE + +E+ K L GDR Sbjct: 748 RINVSALDCTGCSVCVEQCPVKCLEMKPLESEFEMQKDAIRFVREMVAPKPEL---GDR 803 >gi|114566201|ref|YP_753355.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337136|gb|ABI67984.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 590 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 34/95 (35%), Gaps = 14/95 (14%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 +RY F+ + + +K L +Y +RC+ C LC CPA I Sbjct: 501 TTIRY-FRDEYEAHIREKKCPAKQC----QELLQYIIDPDRCMGCGLCVYACPADCIK-- 553 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 G Y I+ C CG C + CP Sbjct: 554 -------GGENNQPYYIEQENCSKCGACLDICPER 581 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 16/45 (35%), Positives = 21/45 (46%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 I + ++Y ID +C+ CGLC ACP D I G N Sbjct: 513 HIREKKCPAKQCQELLQYIIDPDRCMGCGLCVYACPADCIKGGEN 557 >gi|323476735|gb|ADX81973.1| thiamine pyrophosphate domain, TPP-binding protein [Sulfolobus islandicus HVE10/4] Length = 612 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 22/68 (32%), Gaps = 10/68 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L + E+C C +C AI + ID CI CG C Sbjct: 541 LPKAIVDLEKCTGCSICYDYFTCPAIIPRKDKKAE----------IDNYTCIGCGACIPV 590 Query: 113 CPVDAIVE 120 CP AI Sbjct: 591 CPFKAISL 598 >gi|315187127|gb|EFU20884.1| hydrogenase large subunit domain protein [Spirochaeta thermophila DSM 6578] Length = 527 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 26/65 (40%), Gaps = 6/65 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQEA 112 ERCI C LCE +CP AI P ID CI CG C +A Sbjct: 191 DYERCINCGLCERVCPFHAIVRIPVPCEEVCPVGAIEKGEDGVARIDRGACILCGKCLKA 250 Query: 113 CPVDA 117 CP A Sbjct: 251 CPFGA 255 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 31/94 (32%), Gaps = 5/94 (5%) Query: 29 KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88 + + PFE P A R + ++C+ T Sbjct: 126 RGSVDLAVPFELDDGFPLHMITEA--CNACEGARFMVTEVCQGCVARPCKTGCPKGAISI 183 Query: 89 GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 R ID +CI CGLC+ CP AIV P Sbjct: 184 ---VRGRASIDYERCINCGLCERVCPFHAIVRIP 214 >gi|289524270|ref|ZP_06441124.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502489|gb|EFD23653.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 1184 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 23/89 (25%), Gaps = 16/89 (17%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHD 88 TS + A+ CI C C ICP A Sbjct: 676 TSKWEKRNIAVEIPKWNPSACIQCGRCTFICPHATIRAKVYDKSYLKDAPEGWQYAEAKW 735 Query: 89 GTRRTVRYDID--MIKCIYCGLCQEACPV 115 + + I C CG C CPV Sbjct: 736 PQYKDQAFTIQIAPEDCTGCGSCVANCPV 764 Score = 33.5 bits (75), Expect = 8.8, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 18/56 (32%), Gaps = 13/56 (23%) Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVR 154 + CI CG C CP I YDK L + + W+ + Sbjct: 692 NPSACIQCGRCTFICPHATIRAK-------------VYDKSYLKDAPEGWQYAEAK 734 >gi|288800889|ref|ZP_06406346.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Prevotella sp. oral taxon 299 str. F0039] gi|288332350|gb|EFC70831.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Prevotella sp. oral taxon 299 str. F0039] Length = 1191 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 30/101 (29%), Gaps = 18/101 (17%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK----- 102 RG A + CI C C +CP I D+ + K Sbjct: 678 RGVEAFNPEWT-ADNCIQCNKCAYVCPHACIRPFVLDEAEHAQFNDTTLDMKVPKTMAGM 736 Query: 103 ----------CIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 C+ CG C + CP + G + TR E Sbjct: 737 HFRIQVSVLDCVGCGNCADVCPGN--KNGKALDMVPFTRDE 775 >gi|206901010|ref|YP_002251422.1| iron-sulfur cluster-binding protein [Dictyoglomus thermophilum H-6-12] gi|206740113|gb|ACI19171.1| iron-sulfur cluster-binding protein [Dictyoglomus thermophilum H-6-12] Length = 369 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 21/65 (32%), Gaps = 10/65 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C+ C CP A+ + + CI CG C CP AI Sbjct: 191 NPNLCIGCRRCVTHCPTGALEMVNKKSVLT----------RPDLCIGCGECAVVCPTSAI 240 Query: 119 VEGPN 123 N Sbjct: 241 KILWN 245 >gi|164686658|ref|ZP_02210686.1| hypothetical protein CLOBAR_00253 [Clostridium bartlettii DSM 16795] gi|164604048|gb|EDQ97513.1| hypothetical protein CLOBAR_00253 [Clostridium bartlettii DSM 16795] Length = 628 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 27/81 (33%), Positives = 34/81 (41%), Gaps = 12/81 (14%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 K P + + L + N CI C LC+ CPA AIT E + + Sbjct: 557 HVKDKKCPAAKCQSMLNYFIND--NCIGCGLCKKNCPADAITGEKKEK----------HV 604 Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID KC+ CG C E C AI Sbjct: 605 IDTTKCLKCGACMEKCKKHAI 625 Score = 38.5 bits (88), Expect = 0.32, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 9/72 (12%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 ++ + + Y I+ CI CGLC++ CP DAI E +++ D Sbjct: 557 HVKDKKCPAAKCQSMLNYFIN-DNCIGCGLCKKNCPADAI--------TGEKKEKHVIDT 607 Query: 139 ERLLNNGDRWES 150 + L G E Sbjct: 608 TKCLKCGACMEK 619 >gi|27377428|ref|NP_768957.1| formate dehydrogenase subunit alpha [Bradyrhizobium japonicum USDA 110] gi|27350572|dbj|BAC47582.1| formate dehydrogenase alpha subunit [Bradyrhizobium japonicum USDA 110] Length = 922 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 3/98 (3%) Query: 25 RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESG 83 F+ T + + R+ + + + CI C LC C Q + Sbjct: 109 SKFWHWAETTGVTESRFPAAERWATDASHPAMRVNLDACIQCGLCVRACREVQVNDVIGM 168 Query: 84 PRCHDGTRRTVRYD--IDMIKCIYCGLCQEACPVDAIV 119 G++ +D + C+ CG C +ACP A++ Sbjct: 169 AYRSHGSKIVFDFDDPMGESTCVACGECVQACPTGALM 206 >gi|148266248|ref|YP_001232954.1| molybdopterin oxidoreductase [Geobacter uraniireducens Rf4] gi|146399748|gb|ABQ28381.1| molybdopterin oxidoreductase [Geobacter uraniireducens Rf4] Length = 828 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 26/93 (27%), Gaps = 4/93 (4%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 T + EK + RCI C C IC Sbjct: 118 KVNTNKFHDEKFHHKIDYENPLI----ERDMNRCIHCGKCARICDEIVSYGAYTFISRGI 173 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + + C +CG C CPV A++ P Sbjct: 174 EAKMGTEFDGPLNCEFCGSCVSVCPVGALISRP 206 Score = 34.3 bits (77), Expect = 5.1, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 19/66 (28%), Gaps = 5/66 (7%) Query: 53 LRRYPNGEERCIACKLC-----EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 L ++P C A C H + DM +CI+CG Sbjct: 92 LLKHPIDCPVCDAAGDCDLQNLTYEYKVNTNKFHDEKFHHKIDYENPLIERDMNRCIHCG 151 Query: 108 LCQEAC 113 C C Sbjct: 152 KCARIC 157 >gi|325968712|ref|YP_004244904.1| pyruvate:ferredoxin oxidoreductase (POR), subunit delta [Vulcanisaeta moutnovskia 768-28] gi|323707915|gb|ADY01402.1| Pyruvate:ferredoxin oxidoreductase (POR), subunit delta [Vulcanisaeta moutnovskia 768-28] Length = 366 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 31/91 (34%), Gaps = 13/91 (14%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P ++ G R ++CI C LC CP + + Sbjct: 248 PNQRNPYFTG--GTAKHYRPVINFDKCIKCSLCWEYCPDSVFDVTPDG----------YF 295 Query: 97 DIDMIKCIYCGLCQEACPVD-AIVEGPNFEF 126 + + C CG+C E CPV I+ EF Sbjct: 296 NPVLAYCKGCGICAEVCPVPDTIIMVDEMEF 326 >gi|305663539|ref|YP_003859827.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Ignisphaera aggregans DSM 17230] gi|304378108|gb|ADM27947.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Ignisphaera aggregans DSM 17230] Length = 107 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 32/66 (48%), Gaps = 1/66 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGP-RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 +++CI C +C +CP AI+I P + G +ID C CGLC E CPV A Sbjct: 40 NQDKCIRCLICWIVCPEPAISIADKPYKDSRGREWKFTLEIDYNYCKGCGLCVEECPVKA 99 Query: 118 IVEGPN 123 I Sbjct: 100 IDFVEE 105 >gi|224371989|ref|YP_002606155.1| PorA4 [Desulfobacterium autotrophicum HRM2] gi|223694708|gb|ACN17991.1| PorA4 [Desulfobacterium autotrophicum HRM2] Length = 1167 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 34/112 (30%), Gaps = 20/112 (17%) Query: 31 KTTINYPFEKGS--TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA----------- 77 + P TS + A+ E CI C C +CP A Sbjct: 653 PVSSFSPDGIFPNSTSKYEKRGVAINVPEWIPENCIQCNQCSFVCPHAAIIPIVATEDEL 712 Query: 78 -----ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP--VDAIVEGP 122 + D R I+ + C CG C + CP V A+V P Sbjct: 713 KNAPGTFETVEGKGKDLKDYKFRMQINPLDCQGCGNCADICPAKVKALVMKP 764 >gi|209544343|ref|YP_002276572.1| dihydropyrimidine dehydrogenase [Gluconacetobacter diazotrophicus PAl 5] gi|209532020|gb|ACI51957.1| dihydroorotate dehydrogenase family protein [Gluconacetobacter diazotrophicus PAl 5] Length = 426 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 5/66 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117 +E CI C LC C + + R Y + C+ C LC CPV D Sbjct: 341 DQESCIQCGLCHIACEDTSHQAIARTRVEG----RRHYAVIDEACVGCNLCAHVCPVDDC 396 Query: 118 IVEGPN 123 I P Sbjct: 397 ITMVPQ 402 >gi|169343278|ref|ZP_02864288.1| [Fe] hydrogenase [Clostridium perfringens C str. JGS1495] gi|169298576|gb|EDS80657.1| [Fe] hydrogenase [Clostridium perfringens C str. JGS1495] Length = 490 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 7/68 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-------IDMIKCIYCGLCQE 111 E+C C C+ +CP AI P + + YD ID KCI CG C Sbjct: 133 DYEKCKECGKCKEVCPYNAIAEVKRPCMRACIPKALSYDVDSKKAVIDDSKCIQCGACVV 192 Query: 112 ACPVDAIV 119 CP AI+ Sbjct: 193 DCPFGAIM 200 Score = 40.9 bits (94), Expect = 0.069, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 3/70 (4%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + R I C + + R+ ID KC CG C+E Sbjct: 90 IACDECPVNRFIVTDACRGCLAKKCRDSCNFGAISFDNRKCK---IDYEKCKECGKCKEV 146 Query: 113 CPVDAIVEGP 122 CP +AI E Sbjct: 147 CPYNAIAEVK 156 >gi|157364373|ref|YP_001471140.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO] gi|157314977|gb|ABV34076.1| NADH dehydrogenase (quinone) [Thermotoga lettingae TMO] Length = 599 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 10/66 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L RY +C+ C C +CP AI+ E + ID CI CG C E Sbjct: 539 LIRYVIDSAKCVGCTACARVCPVNAISGEIRK----------THVIDNDICIRCGSCIEV 588 Query: 113 CPVDAI 118 C AI Sbjct: 589 CRFGAI 594 Score = 42.0 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 25/61 (40%), Gaps = 8/61 (13%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 ++ + +RY ID KC+ C C CPV+AI + E R+ D Sbjct: 525 HVKEKRCPALKCKNLIRYVIDSAKCVGCTACARVCPVNAI--------SGEIRKTHVIDN 576 Query: 139 E 139 + Sbjct: 577 D 577 >gi|148643398|ref|YP_001273911.1| flavoprotein [Methanobrevibacter smithii ATCC 35061] gi|222445640|ref|ZP_03608155.1| hypothetical protein METSMIALI_01280 [Methanobrevibacter smithii DSM 2375] gi|261349809|ref|ZP_05975226.1| archaeoflavoprotein, MJ0208 family [Methanobrevibacter smithii DSM 2374] gi|148552415|gb|ABQ87543.1| flavoprotein [Methanobrevibacter smithii ATCC 35061] gi|222435205|gb|EEE42370.1| hypothetical protein METSMIALI_01280 [Methanobrevibacter smithii DSM 2375] gi|288860594|gb|EFC92892.1| archaeoflavoprotein, MJ0208 family [Methanobrevibacter smithii DSM 2374] Length = 233 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 29/88 (32%), Positives = 38/88 (43%), Gaps = 18/88 (20%) Query: 61 ERCIACKLCEA--ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +C CK C A IC +AI ID++KCI CGLC++ACP AI Sbjct: 145 SKCEDCKECVASLICEQKAIVPHKE--------------IDLLKCIGCGLCKDACPNGAI 190 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGD 146 EG R + ++L GD Sbjct: 191 SEGKI--ITMYMRDIDIENTKKLTGIGD 216 >gi|110800553|ref|YP_697264.1| [Fe] hydrogenase [Clostridium perfringens ATCC 13124] gi|110675200|gb|ABG84187.1| [Fe] hydrogenase [Clostridium perfringens ATCC 13124] Length = 490 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 7/68 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-------IDMIKCIYCGLCQE 111 E+C C C+ +CP AI P + + YD ID KCI CG C Sbjct: 133 DYEKCKECGKCKEVCPYNAIAEVKRPCMRACIPKALSYDVDSKKAVIDDSKCIQCGACVV 192 Query: 112 ACPVDAIV 119 CP AI+ Sbjct: 193 DCPFGAIM 200 Score = 40.9 bits (94), Expect = 0.069, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 3/70 (4%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + R I C + + R+ ID KC CG C+E Sbjct: 90 IACDECPVNRFIVTDACRGCLAKKCRDSCNFGAISFDNRKCK---IDYEKCKECGKCKEV 146 Query: 113 CPVDAIVEGP 122 CP +AI E Sbjct: 147 CPYNAIAEVK 156 >gi|94269811|ref|ZP_01291569.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium MLMS-1] gi|93451066|gb|EAT02016.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium MLMS-1] Length = 668 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 18/87 (20%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C+ C C +CP A I+ R C+ CGLC ACP AI Sbjct: 495 NDYCVKCLNCVRLCPYDAPRIDRTARVP------------AEHCLACGLCYGACPTGAIR 542 Query: 120 EGPNFEFATETRQELYYDKERLLNNGD 146 N + ++L +RLL D Sbjct: 543 LQNN------SPEQLAASSQRLLAELD 563 >gi|116748324|ref|YP_845011.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116697388|gb|ABK16576.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Syntrophobacter fumaroxidans MPOB] Length = 381 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 2/60 (3%) Query: 61 ERCIACKLCEAICPAQAIT--IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI C +C C +AI + T ID +C+ C C ACP A+ Sbjct: 193 KNCIGCGVCRDQCAHEAIELVDRPEDAPRPEPKITQMARIDPRRCVGCAACIHACPQHAL 252 >gi|108804450|ref|YP_644387.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Rubrobacter xylanophilus DSM 9941] gi|108765693|gb|ABG04575.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Rubrobacter xylanophilus DSM 9941] Length = 531 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 33/161 (20%), Positives = 47/161 (29%), Gaps = 45/161 (27%) Query: 39 EKGSTSPRFRGEHALRRYPN------------------------GEERCIACKLCEAICP 74 EKG R H +R +RCI CK C CP Sbjct: 42 EKGEFPDTQRAFHVMRCNHCEDAPCVEACPVTALYVREDGIVDFNWDRCIGCKACTQACP 101 Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE----- 129 A+ I+ ++ C CP AI+ G + A+E Sbjct: 102 YDALYIDPESHTAAKCNYCAHRVDMGLE----PACVNVCPEQAIISGDMDDPASEISRLL 157 Query: 130 TRQELYY------DKERL-LNNGDRWESEIVRNIVTDSPYR 163 R+++ K +L NGD D+P R Sbjct: 158 AREKVTVRRPEKGTKPKLFYINGDE-----AALTPEDAPVR 193 Score = 42.4 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 31/94 (32%), Gaps = 17/94 (18%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQA-----ITIESGPRCHDGTRRTVRYDIDMIKCIY 105 A + +CI C C C A+ + G + +++C + Sbjct: 1 MANYGFIIDNRKCIGCHACTVACKAEHEVPLGVNRTWVKYIEKGEFPDTQRAFHVMRCNH 60 Query: 106 C--GLCQEACPVDAIVEGPNFEFATETRQELYYD 137 C C EACPV A+ R++ D Sbjct: 61 CEDAPCVEACPVTAL----------YVREDGIVD 84 >gi|313903955|ref|ZP_07837335.1| hydrogenase large subunit domain protein [Eubacterium cellulosolvens 6] gi|313471104|gb|EFR66426.1| hydrogenase large subunit domain protein [Eubacterium cellulosolvens 6] Length = 513 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 25/70 (35%), Gaps = 6/70 (8%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCG 107 R +C C C CP AI P + Y+ ID KCI CG Sbjct: 124 HRSHIDPTKCRECGKCAQACPYNAIVHLERPCKKACPVGAITYNEYGICIIDEEKCINCG 183 Query: 108 LCQEACPVDA 117 C ACP A Sbjct: 184 HCIHACPFGA 193 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 13/66 (19%) Query: 57 PNGEERCIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + + C C C+ C AI+I + R ID KC CG C +ACP Sbjct: 96 YSVTDNCRKCMGQACKNACKFDAISIGNH-----------RSHIDPTKCRECGKCAQACP 144 Query: 115 VDAIVE 120 +AIV Sbjct: 145 YNAIVH 150 >gi|237798781|ref|ZP_04587242.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv. oryzae str. 1_6] gi|331021634|gb|EGI01691.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv. oryzae str. 1_6] Length = 291 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 10/75 (13%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 RG + E CI C C CP AI + + + + + +C C Sbjct: 76 RGAAPAQVAFIREAECIGCTKCIQACPVDAIVGAAK----------LMHTVIIEECTGCD 125 Query: 108 LCQEACPVDAIVEGP 122 LC CPVD I P Sbjct: 126 LCVAPCPVDCIEMHP 140 >gi|224588326|gb|ACN58950.1| iron-sulfur cluster-binding protein [uncultured bacterium BLR10] Length = 245 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 26/74 (35%), Gaps = 10/74 (13%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C LC CP AI + + + + C C LC CPVD Sbjct: 81 YIDESLCIGCTLCIQACPVDAIIGAAK----------LMHTVVPDLCTGCDLCVNPCPVD 130 Query: 117 AIVEGPNFEFATET 130 IV P E Sbjct: 131 CIVMHPVTETTGWN 144 Score = 37.0 bits (84), Expect = 0.91, Method: Composition-based stats. Identities = 15/28 (53%), Positives = 16/28 (57%) Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAI 118 R ID CI C LC +ACPVDAI Sbjct: 75 RPRAVAYIDESLCIGCTLCIQACPVDAI 102 >gi|319937320|ref|ZP_08011727.1| NADH dehydrogenase [Coprobacillus sp. 29_1] gi|319807686|gb|EFW04279.1| NADH dehydrogenase [Coprobacillus sp. 29_1] Length = 597 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 27/68 (39%), Positives = 29/68 (42%), Gaps = 9/68 (13%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 AL Y E++C C LC CPA AI E G Y ID KCI CG C Sbjct: 536 KALLSYEIDEDKCRKCGLCARQCPANAIDGELGKVP---------YRIDQNKCIKCGNCM 586 Query: 111 EACPVDAI 118 AC I Sbjct: 587 TACHFGVI 594 Score = 38.9 bits (89), Expect = 0.22, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 18/40 (45%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 I + + Y+ID KC CGLC CP +AI Sbjct: 524 HIIDKKCPAGVCKALLSYEIDEDKCRKCGLCARQCPANAI 563 >gi|308162304|gb|EFO64710.1| Pyruvate-flavodoxin oxidoreductase [Giardia lamblia P15] Length = 1253 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 30/161 (18%), Positives = 45/161 (27%), Gaps = 35/161 (21%) Query: 5 RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64 V + L F + P G S + A + +E CI Sbjct: 669 DKYVKDIILPAVTRKFANIGTKDVMKYNSGKIP---GGYSKYEKLGSAAKVPTWKKENCI 725 Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK---------------------- 102 C C CP A+ +++ +K Sbjct: 726 QCGFCSVQCPHAAVRCFVMNEDAKPDNVPEDFEMLDMKGKLAAVNSDSSKIKFRVQVSPL 785 Query: 103 -CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLL 142 C CG+C EACP DA+ P + DK++ L Sbjct: 786 DCRGCGVCVEACPKDALAMTPI---------DTVLDKQQKL 817 >gi|293377681|ref|ZP_06623870.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecium PC4.1] gi|292643681|gb|EFF61802.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecium PC4.1] Length = 1230 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 20/93 (21%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTV 94 AL +RC C C +CP AI I R DG + Sbjct: 680 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMEEAPEGFIVREMRGADGVKY-- 737 Query: 95 RYDIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125 R + + C CGLC EACP A+V P E Sbjct: 738 RIQVSVEDCTGCGLCVEACPAKGKALVMKPYEE 770 >gi|257898280|ref|ZP_05677933.1| pyruvate decarboxylase [Enterococcus faecium Com15] gi|257836192|gb|EEV61266.1| pyruvate decarboxylase [Enterococcus faecium Com15] Length = 1227 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 20/93 (21%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTV 94 AL +RC C C +CP AI I R DG + Sbjct: 677 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMEEAPEGFIVREMRGADGVKY-- 734 Query: 95 RYDIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125 R + + C CGLC EACP A+V P E Sbjct: 735 RIQVSVEDCTGCGLCVEACPAKGKALVMKPYEE 767 >gi|257895709|ref|ZP_05675362.1| pyruvate decarboxylase [Enterococcus faecium Com12] gi|257832274|gb|EEV58695.1| pyruvate decarboxylase [Enterococcus faecium Com12] Length = 1227 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 20/93 (21%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTV 94 AL +RC C C +CP AI I R DG + Sbjct: 677 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMEEAPEGFIVREMRGADGVKY-- 734 Query: 95 RYDIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125 R + + C CGLC EACP A+V P E Sbjct: 735 RIQVSVEDCTGCGLCVEACPAKGKALVMKPYEE 767 >gi|257887172|ref|ZP_05666825.1| pyruvate decarboxylase [Enterococcus faecium 1,141,733] gi|257823226|gb|EEV50158.1| pyruvate decarboxylase [Enterococcus faecium 1,141,733] Length = 1227 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 20/93 (21%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTV 94 AL +RC C C +CP AI I R DG + Sbjct: 677 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMEEAPEGFIVREMRGADGVKY-- 734 Query: 95 RYDIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125 R + + C CGLC EACP A+V P E Sbjct: 735 RIQVSVEDCTGCGLCVEACPAKGKALVMKPYEE 767 >gi|227551692|ref|ZP_03981741.1| pyruvate synthase [Enterococcus faecium TX1330] gi|227179133|gb|EEI60105.1| pyruvate synthase [Enterococcus faecium TX1330] Length = 1230 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 20/93 (21%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTV 94 AL +RC C C +CP AI I R DG + Sbjct: 680 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMEEAPEGFIVREMRGADGVKY-- 737 Query: 95 RYDIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125 R + + C CGLC EACP A+V P E Sbjct: 738 RIQVSVEDCTGCGLCVEACPAKGKALVMKPYEE 770 >gi|117617793|ref|YP_857568.1| iron-sulfur cluster-binding protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117559200|gb|ABK36148.1| iron-sulfur cluster-binding protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 576 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 9/70 (12%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C C A+CP++A+ + CI CG+C++ACP AIV Sbjct: 443 DCTLCMGCVAVCPSRALHAVGHAPG---------LNFIEQDCIQCGMCEKACPEQAIVLM 493 Query: 122 PNFEFATETR 131 P + E R Sbjct: 494 PRLQPVPEAR 503 Score = 35.5 bits (80), Expect = 2.6, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 11/53 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C +CP A+ +G R ID C G C ACP AI Sbjct: 216 CSRCLDVCPTDALKPING-----------RIQIDPHLCQGFGSCASACPTGAI 257 Score = 35.5 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 2/49 (4%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR--YDIDMIKCIYCG 107 + CI C +CE CP QAI + + RR V+ + CI CG Sbjct: 473 QDCIQCGMCEKACPEQAIVLMPRLQPVPEARRAVQSLKAEEAACCIRCG 521 >gi|323474197|gb|ADX84803.1| thiamine pyrophosphate protein domain protein TPP-binding protein [Sulfolobus islandicus REY15A] Length = 612 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 22/68 (32%), Gaps = 10/68 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L + E+C C +C AI + ID CI CG C Sbjct: 541 LPKAIVDLEKCTGCSICYDYFTCPAIIPRKDKKAE----------IDNYTCIGCGACIPV 590 Query: 113 CPVDAIVE 120 CP AI Sbjct: 591 CPFKAISL 598 >gi|312137325|ref|YP_004004662.1| glutamate synthase (nadph) gltb2 subunit [Methanothermus fervidus DSM 2088] gi|311225044|gb|ADP77900.1| glutamate synthase (NADPH) GltB2 subunit [Methanothermus fervidus DSM 2088] Length = 499 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 32/96 (33%), Gaps = 15/96 (15%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 E C C C CP I +G + I +C+ C +C+E CP Sbjct: 26 CDNRDENLCKDCFSCYNNCPHNVYEIINGEP----------FPIWHERCVGCRICEEMCP 75 Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLNNGDRWES 150 +AI E R+ + L+ + E Sbjct: 76 NNAI----EVHAVPEDRRN-VWSYADLVEIQRKAEE 106 >gi|309379085|emb|CBX22216.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 279 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 24/64 (37%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CPA AI + + +C CGLC CPVD I Sbjct: 75 DETACIGCTACIRSCPADAIMGAGK----------FMHTVIADECTGCGLCVAPCPVDCI 124 Query: 119 VEGP 122 P Sbjct: 125 HMQP 128 Score = 33.9 bits (76), Expect = 8.5, Method: Composition-based stats. Identities = 11/23 (47%), Positives = 13/23 (56%) Query: 97 DIDMIKCIYCGLCQEACPVDAIV 119 ID CI C C +CP DAI+ Sbjct: 73 RIDETACIGCTACIRSCPADAIM 95 >gi|308173196|ref|YP_003919901.1| oxidoreductase [Bacillus amyloliquefaciens DSM 7] gi|307606060|emb|CBI42431.1| putative oxidoreductase [Bacillus amyloliquefaciens DSM 7] Length = 781 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 9/101 (8%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 ++ + PF++ + Y ++CI C C C +T Sbjct: 114 TVKEM--KINHQSIPFDQKPYPKD----ESNPFYRYDPDQCILCGRCVEACQDVQVTETL 167 Query: 83 GPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPVDAIVE 120 R + I+ C+ CG C CP +A++E Sbjct: 168 SIDWDRKHPRVIWDQDVPINESSCVSCGHCSTVCPCNAMME 208 Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 21/66 (31%), Gaps = 9/66 (13%) Query: 57 PNGEERCIAC----KLCEAICPA-----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 N E C C CE +I + + Y D +CI CG Sbjct: 93 HNHELYCTVCDYNNGSCEVHNTVKEMKINHQSIPFDQKPYPKDESNPFYRYDPDQCILCG 152 Query: 108 LCQEAC 113 C EAC Sbjct: 153 RCVEAC 158 >gi|295115323|emb|CBL36170.1| Iron only hydrogenase large subunit, C-terminal domain [butyrate-producing bacterium SM4/1] Length = 507 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQ 110 +++CI C C+ +C AI ++ P + DID KC+ CG C Sbjct: 148 YIDQDKCIKCGKCKEVCGYNAIIVQERPCAAACGMDAIHSDVNGKADIDYDKCVSCGQCL 207 Query: 111 EACPVDAI 118 CP AI Sbjct: 208 VNCPFGAI 215 Score = 38.2 bits (87), Expect = 0.38, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 7/63 (11%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-------IDMIKCIYCGLCQEACPV 115 C AC + P + V D ID KCI CG C+E C Sbjct: 107 CNACHEKRVYVTDGCQGCLAHPCVEVCPKGAVTLDRTNGRSYIDQDKCIKCGKCKEVCGY 166 Query: 116 DAI 118 +AI Sbjct: 167 NAI 169 >gi|256827982|ref|YP_003156710.1| formate dehydrogenase subunit alpha [Desulfomicrobium baculatum DSM 4028] gi|256577158|gb|ACU88294.1| formate dehydrogenase, alpha subunit [Desulfomicrobium baculatum DSM 4028] Length = 886 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 5/88 (5%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRY 96 FE+ PR+R E +CI C C C Q T+ Sbjct: 122 FERTK--PRYRPETGNPFIVRDFSKCILCGRCVQACNEVQVNEAIDFGYRGAATKIVAGC 179 Query: 97 D--IDMIKCIYCGLCQEACPVDAIVEGP 122 D + C++CG C + CP A+ Sbjct: 180 DTTLAESDCVFCGECLQVCPTGALSMTD 207 >gi|283796610|ref|ZP_06345763.1| Fe-hydrogenase large subunit family protein [Clostridium sp. M62/1] gi|291076031|gb|EFE13395.1| Fe-hydrogenase large subunit family protein [Clostridium sp. M62/1] Length = 507 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQ 110 +++CI C C+ +C AI ++ P + DID KC+ CG C Sbjct: 148 YIDQDKCIKCGKCKEVCGYNAIIVQERPCAAACGMDAIHSDVNGKADIDYDKCVSCGQCL 207 Query: 111 EACPVDAI 118 CP AI Sbjct: 208 VNCPFGAI 215 Score = 38.2 bits (87), Expect = 0.38, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 7/63 (11%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-------IDMIKCIYCGLCQEACPV 115 C AC + P + V D ID KCI CG C+E C Sbjct: 107 CNACHEKRVYVTDGCQGCLAHPCVEVCPKGAVTLDRTNGRSYIDQDKCIKCGKCKEVCGY 166 Query: 116 DAI 118 +AI Sbjct: 167 NAI 169 >gi|222529694|ref|YP_002573576.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit [Caldicellulosiruptor bescii DSM 6725] gi|222456541|gb|ACM60803.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit [Caldicellulosiruptor bescii DSM 6725] Length = 339 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 2/66 (3%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E+CI C LCE CP + +G + D C C C + CP A+VE Sbjct: 252 EKCINCGLCETTCPD--YVFVWDRKAENGKLKMFNLGPDYQYCKGCLRCVDICPTGALVE 309 Query: 121 GPNFEF 126 G E+ Sbjct: 310 GIEREY 315 >gi|302348411|ref|YP_003816049.1| Indolepyruvate:ferredoxin oxidoreductase (IOR), alpha subunit [Acidilobus saccharovorans 345-15] gi|302328823|gb|ADL19018.1| Indolepyruvate:ferredoxin oxidoreductase (IOR), alpha subunit [Acidilobus saccharovorans 345-15] Length = 633 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 10/63 (15%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 Y +++C AC +C AI ++ + ID C CG+C E CP Sbjct: 566 YQVEDDKCTACGICYNAFSCPAIFVKDDRKA----------WIDPSLCTGCGVCAEICPY 615 Query: 116 DAI 118 AI Sbjct: 616 KAI 618 >gi|302343816|ref|YP_003808345.1| electron transfer flavoprotein alpha/beta-subunit [Desulfarculus baarsii DSM 2075] gi|301640429|gb|ADK85751.1| Electron transfer flavoprotein alpha/beta-subunit [Desulfarculus baarsii DSM 2075] Length = 405 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 23/72 (31%), Gaps = 15/72 (20%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C C CP A+ + G C CG C +ACP AI Sbjct: 6 DKNLCTGCGSCVDACPFGAMELHDGVAVAG------------DGCTLCGACVDACPESAI 53 Query: 119 VEGPNFEFATET 130 E A E Sbjct: 54 GLD---EPAGEQ 62 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 14/32 (43%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 ID C CG C +ACP A+ A + Sbjct: 5 IDKNLCTGCGSCVDACPFGAMELHDGVAVAGD 36 >gi|300814489|ref|ZP_07094750.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511407|gb|EFK38646.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 1178 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 40/123 (32%), Gaps = 30/123 (24%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR----------- 91 TS + A+ E CI C C +CP I + + Sbjct: 670 TSKYEKRGIAVNVPHWKIENCIQCNQCSLVCPHAVIRPFLLDKEEAKKKPETFETMSARG 729 Query: 92 -----RTVRYDIDMIKCIYCGLCQEACP--VDAIVEGP----------NFEFATE--TRQ 132 R I + C CG C + CP A+V P N+EFAT ++Q Sbjct: 730 KGLTDYEFRIQISPLDCTGCGNCAQVCPAKEKALVMTPYEKELEVQAINWEFATTVKSKQ 789 Query: 133 ELY 135 + Sbjct: 790 DNI 792 >gi|170733685|ref|YP_001765632.1| ferredoxin [Burkholderia cenocepacia MC0-3] gi|169816927|gb|ACA91510.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia cenocepacia MC0-3] Length = 306 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 22/66 (33%), Gaps = 10/66 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C LC CP AI + I C C LC CPVD Sbjct: 81 FIDENLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVASLCTGCDLCIPPCPVD 130 Query: 117 AIVEGP 122 I P Sbjct: 131 CIAMLP 136 >gi|168205840|ref|ZP_02631845.1| [Fe] hydrogenase [Clostridium perfringens E str. JGS1987] gi|170662681|gb|EDT15364.1| [Fe] hydrogenase [Clostridium perfringens E str. JGS1987] Length = 490 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 7/68 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-------IDMIKCIYCGLCQE 111 E+C C C+ +CP AI P + + YD ID KCI CG C Sbjct: 133 DYEKCKECGKCKEVCPYNAIAEVKRPCMRACIPKALSYDVDSKKAVIDDSKCIQCGACVV 192 Query: 112 ACPVDAIV 119 CP AI+ Sbjct: 193 DCPFGAIM 200 Score = 40.5 bits (93), Expect = 0.071, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 3/70 (4%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + R I C + + R+ ID KC CG C+E Sbjct: 90 IACDECPVNRFIVTDACRGCLAKKCRDSCNFGAISFDNRKCK---IDYEKCKECGKCKEV 146 Query: 113 CPVDAIVEGP 122 CP +AI E Sbjct: 147 CPYNAIAEVK 156 >gi|28210852|ref|NP_781796.1| pyruvate-flavodoxin oxidoreductase [Clostridium tetani E88] gi|28203291|gb|AAO35733.1| pyruvate-flavodoxin oxidoreductase [Clostridium tetani E88] Length = 1175 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 29/121 (23%), Positives = 39/121 (32%), Gaps = 34/121 (28%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG + E+CI C C ICP +A + Sbjct: 675 RGIAVMVPQWQ-IEKCIQCNQCSYICPHAVIRPFLVTEEEQNRAPKTFETKKAVGKGFEN 733 Query: 94 VRYDID--MIKCIYCGLCQEACPV--DAIVEGP----------NFEFATETRQELYYDKE 139 Y I + C CG C + CP A+V P N+EFA Y+KE Sbjct: 734 YGYRIQVSPLDCTGCGNCADVCPALGKALVMQPAEQEIENQVDNWEFAVT-----LYEKE 788 Query: 140 R 140 + Sbjct: 789 K 789 >gi|302342222|ref|YP_003806751.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075] gi|301638835|gb|ADK84157.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075] Length = 633 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 38/100 (38%), Gaps = 15/100 (15%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 L+Y F+ + + +K L + ++C C C +CP A++ E Sbjct: 549 TTLKY-FRDEYLAHITDKKCPAGVC----KELITFAIDVDKCTGCGSCARLCPQSAVSGE 603 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 + ID CI CG+C ++C A+V Sbjct: 604 KKKP----------HQIDQSLCIRCGVCYDSCKFGAVVIS 633 >gi|299135121|ref|ZP_07028312.1| molybdopterin oxidoreductase Fe4S4 region [Afipia sp. 1NLS2] gi|298590098|gb|EFI50302.1| molybdopterin oxidoreductase Fe4S4 region [Afipia sp. 1NLS2] Length = 308 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 4/75 (5%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT----VRYDIDMIKCIYCGLCQE 111 Y ++CI C C C Q + G ++ C++CG C E Sbjct: 162 YVREYDKCILCYKCVDACGTQWQNSFAIQIAGRGFDSQISTEFAVELPESACVFCGNCVE 221 Query: 112 ACPVDAIVEGPNFEF 126 CP A+ ++ Sbjct: 222 VCPTGALSFKSEYDM 236 >gi|288817439|ref|YP_003431786.1| NADH dehydrogenase I chain G [Hydrogenobacter thermophilus TK-6] gi|288786838|dbj|BAI68585.1| NADH dehydrogenase I chain G [Hydrogenobacter thermophilus TK-6] gi|308751046|gb|ADO44529.1| ferredoxin [Hydrogenobacter thermophilus TK-6] Length = 627 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 2/64 (3%) Query: 61 ERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RC+ C C +C A + R ID C CGLC CPV AI Sbjct: 150 NRCVVCYRCTRVCDDVNGARALYVEERGFHTNIVPTVRPIDTSSCEMCGLCVHVCPVGAI 209 Query: 119 VEGP 122 + P Sbjct: 210 ISKP 213 >gi|317153654|ref|YP_004121702.1| cobyrinic acid ac-diamide synthase [Desulfovibrio aespoeensis Aspo-2] gi|316943905|gb|ADU62956.1| cobyrinic acid ac-diamide synthase [Desulfovibrio aespoeensis Aspo-2] Length = 299 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 6/66 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C +C AI D + Y + +C C +C E CP AI Sbjct: 64 DPEACIGCGQCAELCRFDAI------AGPDCNHPGIAYRVLPFRCEGCKVCVELCPAKAI 117 Query: 119 VEGPNF 124 Sbjct: 118 AFPQRH 123 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 14/38 (36%) Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + + ID CI CG C E C DAI Sbjct: 46 DPRHKVEHEFHSGNEAVIDPEACIGCGQCAELCRFDAI 83 >gi|254491482|ref|ZP_05104661.1| 4Fe-4S binding domain protein [Methylophaga thiooxidans DMS010] gi|224462960|gb|EEF79230.1| 4Fe-4S binding domain protein [Methylophaga thiooxydans DMS010] Length = 517 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 35/82 (42%), Gaps = 10/82 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ C C C ++CP A+ + + C+ CG+C ACP DAI Sbjct: 391 DKQACTLCMSCVSVCPVGAVVDGVDK---------PQLNFIEDLCVQCGICDTACPEDAI 441 Query: 119 VEGPNFEFATET-RQELYYDKE 139 P + F E RQ+ ++E Sbjct: 442 TLSPRYLFEREQARQKRILNEE 463 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 10/53 (18%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C CPA A+ +++ C CG C CP AI Sbjct: 160 CTNCIDACPAGAVESSG----------WDLINVNPSLCQGCGSCTVVCPSGAI 202 >gi|221211649|ref|ZP_03584628.1| electron transport complex, rnfaBcdge type, b subunit [Burkholderia multivorans CGD1] gi|221169010|gb|EEE01478.1| electron transport complex, rnfaBcdge type, b subunit [Burkholderia multivorans CGD1] Length = 288 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 22/67 (32%), Gaps = 10/67 (14%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C LC CP AI + I C C LC CPVD Sbjct: 81 FIDENLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVASLCTGCDLCVPPCPVD 130 Query: 117 AIVEGPN 123 I P Sbjct: 131 CIAMVPI 137 >gi|157375071|ref|YP_001473671.1| pyridine nucleotide-disulphide oxidoreductase [Shewanella sediminis HAW-EB3] gi|157317445|gb|ABV36543.1| pyridine nucleotide-disulphide oxidoreductase [Shewanella sediminis HAW-EB3] Length = 895 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 37/115 (32%), Gaps = 13/115 (11%) Query: 30 AKTTINYPFE---KGSTSPRFRGEHALRRYPNGEERCIACKL-CEAICPAQAITIESGPR 85 K T FE K + C C C A+ A + Sbjct: 221 RKITREDAFEVIRKAEENGLMHSMPNFDGSGETHAICNCCGCGCFALRLAGMW------Q 274 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP---NFEFATETRQELYYD 137 D R ID +C+ CG C E CP +A+ G A +++L +D Sbjct: 275 NPDMVRSNYVVKIDAEQCVACGECVEVCPTNALKLGQKLCEISPAKTAKRDLPHD 329 >gi|42782638|ref|NP_979885.1| molybdopterin oxidoreductase family protein [Bacillus cereus ATCC 10987] gi|42738564|gb|AAS42493.1| molybdopterin oxidoreductase family protein [Bacillus cereus ATCC 10987] Length = 1012 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+E + Y +CIAC C +C + R Sbjct: 156 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 213 Query: 93 TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120 + +I+ C+ CG C CP +A++E Sbjct: 214 VIWDEGVNINDSSCVSCGQCVTICPCNALME 244 Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 124 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 183 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 184 CIACGQCVEVC 194 >gi|20093705|ref|NP_613552.1| heterodisulfide reductase, subunit A, polyferredoxin [Methanopyrus kandleri AV19] gi|41017082|sp|P96801|HDRA2_METKA RecName: Full=CoB--CoM heterodisulfide reductase iron-sulfur subunit A 2 gi|1890204|emb|CAA70999.1| heterodisulfide reductase [Methanopyrus kandleri] gi|19886593|gb|AAM01482.1| Heterodisulfide reductase, subunit A, polyferredoxin [Methanopyrus kandleri AV19] Length = 656 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 27/80 (33%), Gaps = 7/80 (8%) Query: 57 PNGEERCIACKLCEAICPAQAIT-------IESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 E+ C C C +CP + + + ID CI CGLC Sbjct: 242 YVDEDACTGCGACAEVCPIEVPNEFDEGLGMRKAIYKPFPQAVPSVFTIDEEHCIRCGLC 301 Query: 110 QEACPVDAIVEGPNFEFATE 129 +E C DAI E E Sbjct: 302 EEVCDADAIDFDQEPEIVEE 321 Score = 39.7 bits (91), Expect = 0.12, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 7/64 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 EE C C C +CP AI + + ++ C CG C ACP A+ Sbjct: 582 DEEICGGCGTCVELCPYGAIELVEKD-------GKLVAEVTAALCKGCGTCAAACPSGAM 634 Query: 119 VEGP 122 + Sbjct: 635 EQNH 638 Score = 35.1 bits (79), Expect = 3.8, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 20/48 (41%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103 + EE CI C LCE +C A AI + P + + I C Sbjct: 288 FTIDEEHCIRCGLCEEVCDADAIDFDQEPEIVEEEVGAIICAIGYDTC 335 >gi|18311557|ref|NP_563491.1| [Fe] hydrogenase [Clostridium perfringens str. 13] gi|168213503|ref|ZP_02639128.1| [Fe] hydrogenase [Clostridium perfringens CPE str. F4969] gi|168217341|ref|ZP_02642966.1| [Fe] hydrogenase [Clostridium perfringens NCTC 8239] gi|18146241|dbj|BAB82281.1| probable hydrogenase [Clostridium perfringens str. 13] gi|170715055|gb|EDT27237.1| [Fe] hydrogenase [Clostridium perfringens CPE str. F4969] gi|182380626|gb|EDT78105.1| [Fe] hydrogenase [Clostridium perfringens NCTC 8239] Length = 490 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 7/68 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-------IDMIKCIYCGLCQE 111 E+C C C+ +CP AI P + + YD ID KCI CG C Sbjct: 133 DYEKCKECGKCKEVCPYNAIAEVKRPCMRACIPKALSYDVDSKKAVIDDSKCIQCGACVV 192 Query: 112 ACPVDAIV 119 CP AI+ Sbjct: 193 DCPFGAIM 200 Score = 40.5 bits (93), Expect = 0.072, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 3/70 (4%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + R I C + + R+ ID KC CG C+E Sbjct: 90 IACDECPVNRFIVTDACRGCLAKKCRDSCNFGAISFDNRKCK---IDYEKCKECGKCKEV 146 Query: 113 CPVDAIVEGP 122 CP +AI E Sbjct: 147 CPYNAIAEVK 156 >gi|323141631|ref|ZP_08076513.1| putative ferredoxin hydrogenase HydA1 [Phascolarctobacterium sp. YIT 12067] gi|322413896|gb|EFY04733.1| putative ferredoxin hydrogenase HydA1 [Phascolarctobacterium sp. YIT 12067] Length = 575 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 3/68 (4%) Query: 59 GEERCIACKLCEAICPA---QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 +E+CI C C +C ++ +G + +D+ C YCG C + CP Sbjct: 146 DQEKCILCGRCIRVCRDVQGMSVYSFAGRGFNTMVSTAFEHDLLNSACTYCGQCADVCPT 205 Query: 116 DAIVEGPN 123 AIVE + Sbjct: 206 GAIVEKDD 213 >gi|313888440|ref|ZP_07822107.1| pyruvate synthase [Peptoniphilus harei ACS-146-V-Sch2b] gi|312845469|gb|EFR32863.1| pyruvate synthase [Peptoniphilus harei ACS-146-V-Sch2b] Length = 1178 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 35/110 (31%), Gaps = 29/110 (26%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGT-----------R 91 RG + E CI C C +CP I E +G Sbjct: 676 RGIAVNVPHWK-SENCIQCNQCSLVCPHAVIRPFLADEEEKANAPEGFETIKARGKGLEN 734 Query: 92 RTVRYDIDMIKCIYCGLCQEACP--VDAIVEGP----------NFEFATE 129 R I + C CG C + CP A+V P N+E+A E Sbjct: 735 YEYRMQISPLDCTGCGNCAQVCPAKEKALVMSPFENELDVQAANWEYAFE 784 >gi|301055059|ref|YP_003793270.1| formate dehydrogenase subunit alpha [Bacillus anthracis CI] gi|300377228|gb|ADK06132.1| formate dehydrogenase, alpha subunit [Bacillus cereus biovar anthracis str. CI] Length = 979 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 7/92 (7%) Query: 33 TINYPFE-KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 YP+E K S Y +CIAC C +C + Sbjct: 123 HQKYPYEPKVDVSEVDMTHP---FYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERP 179 Query: 92 RTVRYD---IDMIKCIYCGLCQEACPVDAIVE 120 R + + I+ C+ CG C CP +A++E Sbjct: 180 RVIWDEGVSINDSSCVSCGQCVTICPCNALME 211 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 91 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|293571875|ref|ZP_06682891.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecium E980] gi|291608129|gb|EFF37435.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecium E980] Length = 1230 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 20/93 (21%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTV 94 AL +RC C C +CP AI I R DG + Sbjct: 680 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMEEAPEGFIVREMRGVDGVKY-- 737 Query: 95 RYDIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125 R + + C CGLC EACP A+V P E Sbjct: 738 RIQVSVEDCTGCGLCVEACPAKGKALVMKPYEE 770 >gi|291460311|ref|ZP_06599701.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Oribacterium sp. oral taxon 078 str. F0262] gi|291417066|gb|EFE90785.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Oribacterium sp. oral taxon 078 str. F0262] Length = 1177 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 34/118 (28%), Gaps = 24/118 (20%) Query: 31 KTTINYPFEKGSTSP-----RFRGEHALRRYPNGEERCIACKLCEAICPA---------- 75 + P+ GST RG N + CI C C +CP Sbjct: 659 PVSAFLPYADGSTPSGTAAYEKRGIAVNVPSWN-PDNCIQCNFCSYVCPHAAIRPFAYTE 717 Query: 76 ----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD----AIVEGPNFE 125 +A + + ++ C+ CG C CP A+ P E Sbjct: 718 EEASKAPEGDVTKPMTGMPAYKFGIKVSVMDCVGCGSCANVCPGMKGQKALTMTPIAE 775 >gi|256751588|ref|ZP_05492464.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter ethanolicus CCSD1] gi|256749538|gb|EEU62566.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter ethanolicus CCSD1] Length = 1175 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 53/143 (37%), Gaps = 31/143 (21%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTRRTV 94 G+ + RG + CI C C +CP AI T E +G + Sbjct: 667 PGTAAYEKRGIAVDVPEWQ-IDNCIQCNQCAFVCPHAAIRPFLLTEEEVKNAPEGFKVKK 725 Query: 95 -----------RYDIDMIKCIYCGLCQEACP--VDAIVEGP---------NFEFATE-TR 131 R + ++ C CG+C CP A+V P N+E+A + Sbjct: 726 AIGKGFEGLYYRIQVSVLDCTGCGVCANECPAKEKALVMNPLETQMEEAKNWEYAMTLSP 785 Query: 132 QELYYDKERLLNNGDRWESEIVR 154 +E +KE G ++E+ ++ Sbjct: 786 KENPMNKE--TVKGSQFETPLLE 806 >gi|281420085|ref|ZP_06251084.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Prevotella copri DSM 18205] gi|281405885|gb|EFB36565.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Prevotella copri DSM 18205] Length = 1192 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 46/142 (32%), Gaps = 32/142 (22%) Query: 28 FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------- 80 F T++ ++ G+ + RG A N E CI C C +CP AI Sbjct: 658 FVKHNTVDGTWQNGTAAFEKRGVEAFVPVWN-VENCIQCNKCSFVCPHAAIRPFVLTDEE 716 Query: 81 ---------ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP----VDAIVEGPNFEFA 127 + R +I ++ C+ CG C + CP A+ P Sbjct: 717 LAGIEGLKTQDVKAPKALAGMHFRIEISVLDCLGCGNCADVCPGKKGEKALTMVP----- 771 Query: 128 TETRQELYYDKERLLNNGDRWE 149 D E ++ WE Sbjct: 772 ------FNVDAEDMVKEAANWE 787 >gi|182624288|ref|ZP_02952073.1| [Fe] hydrogenase [Clostridium perfringens D str. JGS1721] gi|177910506|gb|EDT72879.1| [Fe] hydrogenase [Clostridium perfringens D str. JGS1721] Length = 490 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 7/68 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-------IDMIKCIYCGLCQE 111 E+C C C+ +CP AI P + + YD ID KCI CG C Sbjct: 133 DYEKCKECGKCKEVCPYNAIAEVKRPCMRACIPKALSYDVDSKKAVIDDSKCIQCGACVV 192 Query: 112 ACPVDAIV 119 CP AI+ Sbjct: 193 DCPFGAIM 200 Score = 40.5 bits (93), Expect = 0.072, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 3/70 (4%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + R I C + + R+ ID KC CG C+E Sbjct: 90 IACDECPVNRFIVTDACRGCLAKKCRDSCNFGAISFDNRKCK---IDYEKCKECGKCKEV 146 Query: 113 CPVDAIVEGP 122 CP +AI E Sbjct: 147 CPYNAIAEVK 156 >gi|154249675|ref|YP_001410500.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1] gi|154153611|gb|ABS60843.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1] Length = 610 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 10/68 (14%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 A Y E+C+ C C +CP AI E ++ID C+ CG C Sbjct: 540 KAFISYVISPEKCVGCTACARVCPTNAIHGE----------VRKVHEIDQEACVRCGSCI 589 Query: 111 EACPVDAI 118 E C AI Sbjct: 590 EVCRFGAI 597 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 10/41 (24%), Positives = 16/41 (39%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 ++ + + Y I KC+ C C CP +AI Sbjct: 528 HVKDNICPAKKCKAFISYVISPEKCVGCTACARVCPTNAIH 568 >gi|117626444|ref|YP_859767.1| putative pyruvate-formate lyase-activating enzyme [Escherichia coli APEC O1] gi|115515568|gb|ABJ03643.1| putative pyruvate-formate lyase-activating enzyme [Escherichia coli APEC O1] Length = 305 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 28/77 (36%), Gaps = 15/77 (19%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103 R L N CI C C CP QA++ + + I+ +C Sbjct: 45 PESQRHSPELLFKKND---CIRCGKCIDACPQQALSTTNA------------WFINRDRC 89 Query: 104 IYCGLCQEACPVDAIVE 120 I CG C E CP A+ Sbjct: 90 IQCGKCTEICPTRALEM 106 >gi|308271659|emb|CBX28267.1| hypothetical protein N47_G35910 [uncultured Desulfobacterium sp.] Length = 1465 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 24/67 (35%), Gaps = 6/67 (8%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E +CI C LCE C AI R + R C CG+C CP AI Sbjct: 1391 DEGKCIGCGLCEQSCAFGAI------RLKQVHGKGYRAGNYSALCKGCGVCAAGCPQRAI 1444 Query: 119 VEGPNFE 125 E Sbjct: 1445 DMKHFSE 1451 Score = 35.5 bits (80), Expect = 2.4, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 3/35 (8%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 ID+ KC CG C + CPV ++ R+ Sbjct: 86 IDLSKCTSCGDCAKVCPVT---LPNEYDETLSERK 117 >gi|307944819|ref|ZP_07660157.1| dihydropyrimidine dehydrogenase [NADP+] [Roseibium sp. TrichSKD4] gi|307772033|gb|EFO31256.1| dihydropyrimidine dehydrogenase [NADP+] [Roseibium sp. TrichSKD4] Length = 437 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 35/87 (40%), Gaps = 6/87 (6%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 + + + + ++ CI C C C + ++ +G R +++ +C+ Sbjct: 329 QHLNLNYIAKAKIDQDLCIKCGRCHIACED--TSHQAITNLVNGVR---HFEVIDEECVG 383 Query: 106 CGLCQEACPV-DAIVEGPNFEFATETR 131 C LC CPV + I P + + R Sbjct: 384 CNLCVNVCPVENCITMEPMAAGSVDPR 410 >gi|229083820|ref|ZP_04216131.1| formate dehydrogenase [Bacillus cereus Rock3-44] gi|228699477|gb|EEL52151.1| formate dehydrogenase [Bacillus cereus Rock3-44] Length = 980 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E ++ + Y +CIAC C +C + R + Sbjct: 125 KYPYEPKVSAKEV--DMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWSLDRPRVI 182 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 I+ C+ CG C CP +A++E Sbjct: 183 WDTGVSINDSSCVSCGQCVTVCPCNALME 211 Score = 40.1 bits (92), Expect = 0.12, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSAKEVDMTHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|195952802|ref|YP_002121092.1| ferredoxin [Hydrogenobaculum sp. Y04AAS1] gi|195932414|gb|ACG57114.1| ferredoxin [Hydrogenobaculum sp. Y04AAS1] Length = 622 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 5/81 (6%) Query: 61 ERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RC+ C C +C +A + R D ID C CG+C + CPV AI Sbjct: 149 NRCVVCYRCTRVCDYINKAKALYVEERGFDSNIVPTVRPIDTSSCDMCGMCVDVCPVGAI 208 Query: 119 VEGPNFEFATETRQELYYDKE 139 + P F +R L ++E Sbjct: 209 ISKP---FKFWSRSWLLKNEE 226 >gi|163119487|ref|YP_079382.2| iron-sulfur binding domain-containing protein [Bacillus licheniformis ATCC 14580] gi|145902994|gb|AAU23744.2| iron-sulfur binding domain containing protein [Bacillus licheniformis ATCC 14580] Length = 985 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 9/101 (8%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 ++ + PF++ + + + Y ++CI C C C +T Sbjct: 114 TVKEM--KVNHQSIPFDQKP----YHKDESNPFYRYDPDQCILCGRCVEACQDVQVTETL 167 Query: 83 GPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPVDAIVE 120 R + + I+ C+ CG C CP +A++E Sbjct: 168 TIDWERKRPRVIWDNDVPINESSCVSCGHCSTVCPCNAMME 208 Score = 40.9 bits (94), Expect = 0.066, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 21/66 (31%), Gaps = 9/66 (13%) Query: 57 PNGEERCIAC----KLCEAI-----CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 N E C C CE +I + + Y D +CI CG Sbjct: 93 YNHELYCTVCDYNNGGCEIHNTVKEMKVNHQSIPFDQKPYHKDESNPFYRYDPDQCILCG 152 Query: 108 LCQEAC 113 C EAC Sbjct: 153 RCVEAC 158 >gi|49481746|ref|YP_037653.1| formate dehydrogenase subunit alpha [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49333302|gb|AAT63948.1| formate dehydrogenase, alpha subunit [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 979 Score = 50.5 bits (119), Expect = 7e-05, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 7/92 (7%) Query: 33 TINYPFE-KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 YP+E K S Y +CIAC C +C + Sbjct: 123 HQKYPYEPKVDVSEVDMTHP---FYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERP 179 Query: 92 RTVRYD---IDMIKCIYCGLCQEACPVDAIVE 120 R + + I+ C+ CG C CP +A++E Sbjct: 180 RVIWDEGVSINDSSCVSCGQCVTICPCNALME 211 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 91 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|302344645|ref|YP_003809174.1| nitroreductase [Desulfarculus baarsii DSM 2075] gi|301641258|gb|ADK86580.1| nitroreductase [Desulfarculus baarsii DSM 2075] Length = 304 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 11/60 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++CI C C CPAQA T+ +G G R CI CG C CP A+ Sbjct: 10 DAQKCIGCGRCVVTCPAQAFTLAAGKSVVSGQR-----------CILCGHCLAVCPTGAV 58 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 12/31 (38%), Positives = 13/31 (41%) Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 R + ID KCI CG C CP A Sbjct: 1 MDRQISTVIDAQKCIGCGRCVVTCPAQAFTL 31 >gi|153000587|ref|YP_001366268.1| electron transport complex protein RnfC [Shewanella baltica OS185] gi|151365205|gb|ABS08205.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella baltica OS185] Length = 885 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 40/109 (36%), Gaps = 11/109 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114 E+ CI C C CPA P+ + YD ++ CI CG C CP Sbjct: 375 EEKACIRCGECATACPA-----LLLPQQLFWHAKAEEYDKAASYNLKDCIECGCCSYVCP 429 Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 I + A + +K++ R+++ + R + + R Sbjct: 430 -SDIPLVEYYRIAKSALKHAADEKQQAERAKQRFDARLAR-LEEEKLAR 476 >gi|89896304|ref|YP_519791.1| hypothetical protein DSY3558 [Desulfitobacterium hafniense Y51] gi|89335752|dbj|BAE85347.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 273 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 27/108 (25%), Positives = 38/108 (35%), Gaps = 16/108 (14%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 E+CI C LC C I I G I +C+ CG C CP Sbjct: 1 MVNIDSEKCIGCGLCVRDCFPGKIVIVEGKA-----------QIKNKQCMQCGHCIAICP 49 Query: 115 VDAIVEGPNFEFAT---ETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 DA+ + A R+E D + LL N ++ + I + Sbjct: 50 QDAVSMI-EYNMAEVKAYDRREFSVDADILL-NFIKYRRSCRQFIDKE 95 >gi|229042448|ref|ZP_04190194.1| formate dehydrogenase [Bacillus cereus AH676] gi|228726902|gb|EEL78113.1| formate dehydrogenase [Bacillus cereus AH676] Length = 978 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + R + Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 + I+ C+ CG C CP +A++E Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|229108197|ref|ZP_04237819.1| formate dehydrogenase [Bacillus cereus Rock1-15] gi|229143315|ref|ZP_04271746.1| formate dehydrogenase [Bacillus cereus BDRD-ST24] gi|228640122|gb|EEK96521.1| formate dehydrogenase [Bacillus cereus BDRD-ST24] gi|228675213|gb|EEL30435.1| formate dehydrogenase [Bacillus cereus Rock1-15] Length = 978 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + R + Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 + I+ C+ CG C CP +A++E Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|228951082|ref|ZP_04113200.1| formate dehydrogenase [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228808599|gb|EEM55100.1| formate dehydrogenase [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 978 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + R + Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 + I+ C+ CG C CP +A++E Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|218283672|ref|ZP_03489633.1| hypothetical protein EUBIFOR_02227 [Eubacterium biforme DSM 3989] gi|218215661|gb|EEC89199.1| hypothetical protein EUBIFOR_02227 [Eubacterium biforme DSM 3989] Length = 505 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110 +E+CI C C CP AIT P ++ D ID KC+ CG+C Sbjct: 146 CIDQEKCIKCGRCMDACPYHAITKLERPCAASCGMDAIKSDADGKAEIDYDKCVSCGMCL 205 Query: 111 EACPVDAI 118 CP AI Sbjct: 206 VNCPFGAI 213 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 21/61 (34%), Gaps = 5/61 (8%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-----DIDMIKCIYCGLCQEACPVDA 117 C AC + S + + ID KCI CG C +ACP A Sbjct: 107 CNACPEKKVFVTNACQGCLSHQCTEVCPKDAIHIVNGKSCIDQEKCIKCGRCMDACPYHA 166 Query: 118 I 118 I Sbjct: 167 I 167 >gi|157370479|ref|YP_001478468.1| RnfABCDGE type electron transport complex subunit C [Serratia proteamaculans 568] gi|166991048|sp|A8GE00|RNFC_SERP5 RecName: Full=Electron transport complex protein rnfC gi|157322243|gb|ABV41340.1| electron transport complex, RnfABCDGE type, C subunit [Serratia proteamaculans 568] Length = 703 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 3/107 (2%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E+ CI C LC CPA + + G + ++ CI CG C CP Sbjct: 371 QEQEQSCIRCGLCVDACPAG-LLPQQLYWFSRGEEHEKARNHNLFDCIECGACAFVCP-S 428 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 I + + + + R R+E+++ R + + R Sbjct: 429 NIPLVQYYRQEKAEIKAIDLEAARTAEAKARYEAKLAR-LEREKLAR 474 >gi|65320849|ref|ZP_00393808.1| COG3383: Uncharacterized anaerobic dehydrogenase [Bacillus anthracis str. A2012] Length = 975 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 33/92 (35%), Gaps = 7/92 (7%) Query: 33 TINYPFE-KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 YP+E K S Y +CIAC C +C + Sbjct: 119 HQKYPYEPKVDVSEVDMTHP---FYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERP 175 Query: 92 RTVRYD---IDMIKCIYCGLCQEACPVDAIVE 120 R + + I+ C+ CG C CP +A++E Sbjct: 176 RVIWDEGVSINDSSCVSCGQCVTICPCNALME 207 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 87 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 146 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 147 CIACGQCVEVC 157 >gi|310778339|ref|YP_003966672.1| electron transport complex, RnfABCDGE type, C subunit [Ilyobacter polytropus DSM 2926] gi|309747662|gb|ADO82324.1| electron transport complex, RnfABCDGE type, C subunit [Ilyobacter polytropus DSM 2926] Length = 438 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 29/81 (35%), Gaps = 3/81 (3%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEER---CIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 EK + G AL + E CI C C +CP + + G + Sbjct: 336 DEKENLKKGTGGILALLKDECNEYETKACINCGACVDVCPMGLMPLRYVELARKGDYSRM 395 Query: 95 RYDIDMIKCIYCGLCQEACPV 115 + CI CG C+ ACP Sbjct: 396 EKRYSLSSCIKCGCCEYACPT 416 >gi|309777113|ref|ZP_07672077.1| putative [Fe] hydrogenase, large subunit HymC [Erysipelotrichaceae bacterium 3_1_53] gi|308915122|gb|EFP60898.1| putative [Fe] hydrogenase, large subunit HymC [Erysipelotrichaceae bacterium 3_1_53] Length = 572 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 9/62 (14%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C C +C + G + D CI+CG C CP AI E Sbjct: 27 CIRCGQCRDVCQ---------KQISVGHHYDLVKTGDTAICIHCGQCANVCPTGAITEIQ 77 Query: 123 NF 124 ++ Sbjct: 78 DW 79 >gi|284048866|ref|YP_003399205.1| hydrogenase large subunit domain protein [Acidaminococcus fermentans DSM 20731] gi|283953087|gb|ADB47890.1| hydrogenase large subunit domain protein [Acidaminococcus fermentans DSM 20731] Length = 504 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 6/70 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQ 110 + CI C C+ CP A+ + P + + + +ID C+ CG C+ Sbjct: 136 HIDYDMCIECGNCKRACPYGAVVEIARPCENACKVHALHTGKNKKAEIDKNICVECGACR 195 Query: 111 EACPVDAIVE 120 ACP AI E Sbjct: 196 GACPFGAIEE 205 Score = 37.4 bits (85), Expect = 0.63, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 8/86 (9%) Query: 40 KGSTSPRFRGEHALRRYPNGEERC-----IACKLCEAICPAQAITIESGPRCHDGTRRTV 94 K +T P R +H + P C + +C + + Sbjct: 77 KATTEPVDRTQHVIAVLPEACSACPVNKYMITDVCRRCLTHRCMNGCPKKAISV---YQG 133 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVE 120 R ID CI CG C+ ACP A+VE Sbjct: 134 RAHIDYDMCIECGNCKRACPYGAVVE 159 >gi|228957009|ref|ZP_04118784.1| formate dehydrogenase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228802640|gb|EEM49482.1| formate dehydrogenase [Bacillus thuringiensis serovar pakistani str. T13001] Length = 978 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + R + Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 + I+ C+ CG C CP +A++E Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|228995922|ref|ZP_04155580.1| formate dehydrogenase [Bacillus mycoides Rock3-17] gi|228763894|gb|EEM12783.1| formate dehydrogenase [Bacillus mycoides Rock3-17] Length = 980 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E ++ + Y +CIAC C +C + R + Sbjct: 125 KYPYEPKVSAKEV--DMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWSLDRPRVI 182 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 + I+ C+ CG C CP +A++E Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSAKEVDMTHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|228989723|ref|ZP_04149705.1| formate dehydrogenase [Bacillus pseudomycoides DSM 12442] gi|229003539|ref|ZP_04161357.1| formate dehydrogenase [Bacillus mycoides Rock1-4] gi|228757777|gb|EEM07004.1| formate dehydrogenase [Bacillus mycoides Rock1-4] gi|228770057|gb|EEM18639.1| formate dehydrogenase [Bacillus pseudomycoides DSM 12442] Length = 980 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E ++ + Y +CIAC C +C + R + Sbjct: 125 KYPYEPKVSAKEV--DMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWSLDRPRVI 182 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 + I+ C+ CG C CP +A++E Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSAKEVDMTHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|229068276|ref|ZP_04201579.1| formate dehydrogenase [Bacillus cereus F65185] gi|228714737|gb|EEL66609.1| formate dehydrogenase [Bacillus cereus F65185] Length = 978 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + R + Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 + I+ C+ CG C CP +A++E Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|229077902|ref|ZP_04210513.1| formate dehydrogenase [Bacillus cereus Rock4-2] gi|228705420|gb|EEL57795.1| formate dehydrogenase [Bacillus cereus Rock4-2] Length = 978 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + R + Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 + I+ C+ CG C CP +A++E Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|168209817|ref|ZP_02635442.1| [Fe] hydrogenase [Clostridium perfringens B str. ATCC 3626] gi|170712096|gb|EDT24278.1| [Fe] hydrogenase [Clostridium perfringens B str. ATCC 3626] Length = 490 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 7/68 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-------IDMIKCIYCGLCQE 111 E+C C C+ +CP AI P + + YD ID KCI CG C Sbjct: 133 DYEKCKECGKCKEVCPYNAIAEVKRPCMRACIPKALSYDVDSKKAVIDDSKCIQCGACVV 192 Query: 112 ACPVDAIV 119 CP AI+ Sbjct: 193 DCPFGAIM 200 Score = 40.5 bits (93), Expect = 0.072, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 3/70 (4%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + R I C + + R+ ID KC CG C+E Sbjct: 90 IACDECPVNRFIVTDACRGCLAKKCRDSCNFGAISFDNRKCK---IDYEKCKECGKCKEV 146 Query: 113 CPVDAIVEGP 122 CP +AI E Sbjct: 147 CPYNAIAEVK 156 >gi|116749582|ref|YP_846269.1| molybdopterin oxidoreductase [Syntrophobacter fumaroxidans MPOB] gi|116698646|gb|ABK17834.1| molybdopterin oxidoreductase [Syntrophobacter fumaroxidans MPOB] Length = 880 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 6/91 (6%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTR 91 I++P+ R R E A R + + C+ C C +C A I + Sbjct: 117 IDFPY-SPEEFGRHRAEQAGRYFERDYDLCVRCGRCVRVCHEVRGAKAIVFREKHGR-QE 174 Query: 92 RTVRYDIDMIK--CIYCGLCQEACPVDAIVE 120 +D + + C +CG C + CPV A+ E Sbjct: 175 VGTPFDRPLAETGCQFCGACVDVCPVGALRE 205 >gi|150397561|ref|YP_001328028.1| dihydropyrimidine dehydrogenase [Sinorhizobium medicae WSM419] gi|150029076|gb|ABR61193.1| dihydroorotate dehydrogenase family protein [Sinorhizobium medicae WSM419] Length = 437 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 6/76 (7%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI C C C + ++ + +G R +++ +C+ Sbjct: 330 QYLNLNYITKAKIDQDACIKCGRCHIACED--TSHQAITQLVNGVR---HFEVIEEECVG 384 Query: 106 CGLCQEACPV-DAIVE 120 C LC CPV + I Sbjct: 385 CNLCVNVCPVDNCITM 400 >gi|323488015|ref|ZP_08093268.1| formate dehydrogenase subunit alpha [Planococcus donghaensis MPA1U2] gi|323398283|gb|EGA91076.1| formate dehydrogenase subunit alpha [Planococcus donghaensis MPA1U2] Length = 975 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 7/93 (7%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+E + Y +CIAC C +C E+ R Sbjct: 118 HQKYPYE--PKCTVDEVDLTNPFYRYDPNQCIACGQCVEVCQ-NLQVNETLTMDWSRDRP 174 Query: 93 TVRYD----IDMIKCIYCGLCQEACPVDAIVEG 121 V +D I+ C+ CG C ACP +A++E Sbjct: 175 IVLWDGGAKINDSSCVSCGQCVTACPCNALMET 207 Score = 40.1 bits (92), Expect = 0.10, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-------TVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 86 RILENHLLYCTVCDNNNGNCKVHNTVDMMEIEHQKYPYEPKCTVDEVDLTNPFYRYDPNQ 145 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 146 CIACGQCVEVC 156 >gi|301057791|ref|ZP_07198860.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] gi|300448102|gb|EFK11798.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] Length = 574 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 31/86 (36%), Gaps = 11/86 (12%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD-----------GTRRTVRY 96 R Y ERCI C+ C + P I + +G +D + Sbjct: 481 RCYLCYLHYEIDMERCIYCRYCIDVAPRDCIKLVNGVETNDDGAIIGFVETSEWEKVNAV 540 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGP 122 ID +CI CG C CP+D I Sbjct: 541 IIDNKRCIRCGECVRVCPMDCISVTK 566 Score = 37.4 bits (85), Expect = 0.62, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 20/53 (37%) Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 + +S + Y+IDM +CIYC C + P D I E Sbjct: 466 VETGYLKEQSREEAKRCYLCYLHYEIDMERCIYCRYCIDVAPRDCIKLVNGVE 518 >gi|229185806|ref|ZP_04312981.1| formate dehydrogenase [Bacillus cereus BGSC 6E1] gi|228597684|gb|EEK55329.1| formate dehydrogenase [Bacillus cereus BGSC 6E1] Length = 979 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+E + Y +CIAC C +C + R Sbjct: 123 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 180 Query: 93 TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120 + + I+ C+ CG C CP +A++E Sbjct: 181 VIWDEGVSINDSSCVSCGQCVTICPCNALME 211 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 91 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|225865555|ref|YP_002750933.1| molybdopterin oxidoreductase family protein [Bacillus cereus 03BB102] gi|225787962|gb|ACO28179.1| molybdopterin oxidoreductase family protein [Bacillus cereus 03BB102] Length = 979 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+E + Y +CIAC C +C + R Sbjct: 123 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 180 Query: 93 TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120 + + I+ C+ CG C CP +A++E Sbjct: 181 VIWDEGVSINDSSCVSCGQCVTICPCNALME 211 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 91 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|196038509|ref|ZP_03105818.1| molybdopterin oxidoreductase family protein [Bacillus cereus NVH0597-99] gi|196030917|gb|EDX69515.1| molybdopterin oxidoreductase family protein [Bacillus cereus NVH0597-99] Length = 979 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+E + Y +CIAC C +C + R Sbjct: 123 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 180 Query: 93 TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120 + + I+ C+ CG C CP +A++E Sbjct: 181 VIWDEGVSINDSSCVSCGQCVTICPCNALME 211 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 91 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|158520057|ref|YP_001527927.1| AMP-dependent synthetase and ligase [Desulfococcus oleovorans Hxd3] gi|158508883|gb|ABW65850.1| AMP-dependent synthetase and ligase [Desulfococcus oleovorans Hxd3] Length = 708 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 29/86 (33%), Positives = 37/86 (43%), Gaps = 6/86 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGP-RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 EE C C +C ICPA++I + GP + +G D+ CI CG C ACP A Sbjct: 30 NEETCRRCGICSFICPARSIKSDRGPMKWKEGMPWLATVAPDVTNCIACGCCLAACPEGA 89 Query: 118 IVEGPNFEFA-TETR----QELYYDK 138 I F R +L Y K Sbjct: 90 ITIERWFNPGYFYQRLSQTSDLVYPK 115 >gi|160940737|ref|ZP_02088079.1| hypothetical protein CLOBOL_05631 [Clostridium bolteae ATCC BAA-613] gi|158436257|gb|EDP14024.1| hypothetical protein CLOBOL_05631 [Clostridium bolteae ATCC BAA-613] Length = 505 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 25/68 (36%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110 +C C C CP AI P + YD ID KCI CG C Sbjct: 147 YIEPGKCKECGKCSQACPYNAIAHLERPCKKICPVDAITYDEYGICVIDEKKCIQCGACI 206 Query: 111 EACPVDAI 118 +CP AI Sbjct: 207 HSCPFGAI 214 >gi|91200126|emb|CAJ73169.1| similar to molybdopterin containing oxidoreductase (FdhA, nuoG, napA) [Candidatus Kuenenia stuttgartiensis] Length = 896 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 5/81 (6%) Query: 57 PNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEAC 113 +CI C C IC Q + + TR + ++ M C++CG C C Sbjct: 140 YRDMNKCILCGKCVRICDEVQGQHVWAFSDRGIKTRVSTAFEKSMQDGGCVFCGHCVSVC 199 Query: 114 PVDAIVEGPNFEFA--TETRQ 132 PV A+++ P + A ETR+ Sbjct: 200 PVGALMDKPVMKKARSWETRK 220 >gi|30263522|ref|NP_845899.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. Ames] gi|49186372|ref|YP_029624.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. Sterne] gi|50196953|ref|YP_052641.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|165871012|ref|ZP_02215663.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. A0488] gi|167640582|ref|ZP_02398844.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. A0193] gi|170688420|ref|ZP_02879628.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. A0465] gi|170708174|ref|ZP_02898621.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. A0389] gi|177652510|ref|ZP_02934977.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. A0174] gi|190564630|ref|ZP_03017551.1| molybdopterin oxidoreductase family protein [Bacillus anthracis Tsiankovskii-I] gi|227813598|ref|YP_002813607.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. CDC 684] gi|229603890|ref|YP_002867767.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. A0248] gi|254686139|ref|ZP_05149998.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. CNEVA-9066] gi|254723536|ref|ZP_05185324.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. A1055] gi|254738611|ref|ZP_05196314.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. Western North America USA6153] gi|254752929|ref|ZP_05204965.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. Vollum] gi|254759201|ref|ZP_05211227.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. Australia 94] gi|30258157|gb|AAP27385.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. Ames] gi|49180299|gb|AAT55675.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. Sterne] gi|50083015|gb|AAT70149.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|164713223|gb|EDR18749.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. A0488] gi|167511450|gb|EDR86834.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. A0193] gi|170126982|gb|EDS95862.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. A0389] gi|170667590|gb|EDT18345.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. A0465] gi|172082184|gb|EDT67251.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. A0174] gi|190563947|gb|EDV17911.1| molybdopterin oxidoreductase family protein [Bacillus anthracis Tsiankovskii-I] gi|227007095|gb|ACP16838.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. CDC 684] gi|229268298|gb|ACQ49935.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. A0248] Length = 979 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+E + Y +CIAC C +C + R Sbjct: 123 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 180 Query: 93 TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120 + + I+ C+ CG C CP +A++E Sbjct: 181 VIWDEGVSINDSSCVSCGQCVTICPCNALME 211 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 91 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|229092537|ref|ZP_04223693.1| formate dehydrogenase [Bacillus cereus Rock3-42] gi|228690824|gb|EEL44599.1| formate dehydrogenase [Bacillus cereus Rock3-42] Length = 975 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+E + Y +CIAC C +C + R Sbjct: 119 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 176 Query: 93 TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120 + + I+ C+ CG C CP +A++E Sbjct: 177 VIWDEGVSINDSSCVSCGQCVTICPCNALME 207 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 87 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 146 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 147 CIACGQCVEVC 157 >gi|260588646|ref|ZP_05854559.1| Fe-hydrogenase large subunit family protein [Blautia hansenii DSM 20583] gi|331082003|ref|ZP_08331131.1| hypothetical protein HMPREF0992_00055 [Lachnospiraceae bacterium 6_1_63FAA] gi|260541121|gb|EEX21690.1| Fe-hydrogenase large subunit family protein [Blautia hansenii DSM 20583] gi|330405598|gb|EGG85128.1| hypothetical protein HMPREF0992_00055 [Lachnospiraceae bacterium 6_1_63FAA] Length = 501 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 7/76 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQEA 112 +E+CI C C+++CP AI + P R I+ KC+ CG+C + Sbjct: 148 DQEKCIKCGKCKSVCPYDAIAKKERPCARACGVNAIESDEMGRATINNEKCVSCGMCMVS 207 Query: 113 CPVDAI-VEGPNFEFA 127 CP AI + F+ A Sbjct: 208 CPFGAISDKSQIFQLA 223 Score = 42.0 bits (97), Expect = 0.029, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 13/67 (19%) Query: 54 RRYPNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + C C C+ ICP AI+I G ID KCI CG C+ Sbjct: 112 TKMYEVSNMCRGCVAHPCKEICPKGAISIIKGKSV-----------IDQEKCIKCGKCKS 160 Query: 112 ACPVDAI 118 CP DAI Sbjct: 161 VCPYDAI 167 >gi|239628401|ref|ZP_04671432.1| hydrogenase [Clostridiales bacterium 1_7_47_FAA] gi|239518547|gb|EEQ58413.1| hydrogenase [Clostridiales bacterium 1_7_47FAA] Length = 461 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 31/105 (29%), Gaps = 19/105 (18%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + E RCI C C +C + + G R Sbjct: 6 SPEVRVPIDKENVSIFR------EESRCIKCGQCRDMCRDYIGVLGTYDLLRTGDR---- 55 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140 CI CG C CPV++I E P + D E+ Sbjct: 56 -----AVCINCGQCANVCPVESIREQPEYGMVAAD----IMDPEK 91 >gi|196044536|ref|ZP_03111771.1| molybdopterin oxidoreductase family protein [Bacillus cereus 03BB108] gi|196024571|gb|EDX63243.1| molybdopterin oxidoreductase family protein [Bacillus cereus 03BB108] Length = 979 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+E + Y +CIAC C +C + R Sbjct: 123 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 180 Query: 93 TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120 + + I+ C+ CG C CP +A++E Sbjct: 181 VIWDEGVSINDSSCVSCGQCVTICPCNALME 211 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 91 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|167038236|ref|YP_001665814.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116646|ref|YP_004186805.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166857070|gb|ABY95478.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929737|gb|ADV80422.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 1175 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 53/143 (37%), Gaps = 31/143 (21%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTRRTV 94 G+ + RG + CI C C +CP AI T E +G + Sbjct: 667 PGTAAYEKRGIAVDVPEWQ-IDNCIQCNQCAFVCPHAAIRPFLLTEEEVKNAPEGFKVKK 725 Query: 95 -----------RYDIDMIKCIYCGLCQEACP--VDAIVEGP---------NFEFATE-TR 131 R + ++ C CG+C CP A+V P N+E+A + Sbjct: 726 AIGKGFEGLYYRIQVSVLDCTGCGVCANECPAKEKALVMKPLETQMEEAKNWEYAMTLSP 785 Query: 132 QELYYDKERLLNNGDRWESEIVR 154 +E +KE G ++E+ ++ Sbjct: 786 KENPMNKE--TVKGSQFETPLLE 806 >gi|293416256|ref|ZP_06658896.1| sulfite reductase [Escherichia coli B185] gi|291432445|gb|EFF05427.1| sulfite reductase [Escherichia coli B185] Length = 337 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 27/94 (28%), Gaps = 8/94 (8%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 P + S G + R ERCI C C C A+ S Sbjct: 148 KTVIAGCPNDCAKASMSDFGIIGVARMRFTAERCIGCGACVKACAHHAVGCLSLKNGKA- 206 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + CI CG C ACP A P Sbjct: 207 -------TKEESLCIGCGECVLACPTLAWQRQPQ 233 >gi|253741756|gb|EES98619.1| Pyruvate-flavodoxin oxidoreductase [Giardia intestinalis ATCC 50581] Length = 1253 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 34/105 (32%), Gaps = 32/105 (30%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK------------------ 102 E CI C C CP A+ + +++ +K Sbjct: 722 ENCIQCGFCSVQCPHAAVRCFVMNEDNKPDNVPEDFEMLDMKGKLAAVNSDSSKIKFRVQ 781 Query: 103 -----CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLL 142 C CG+C EACP DA+ P + DK++ L Sbjct: 782 VSPLDCRGCGVCVEACPKDALAMTPI---------DTVLDKQQKL 817 >gi|228906337|ref|ZP_04070221.1| formate dehydrogenase [Bacillus thuringiensis IBL 200] gi|228853249|gb|EEM98022.1| formate dehydrogenase [Bacillus thuringiensis IBL 200] Length = 978 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + R + Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 + I+ C+ CG C CP +A++E Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|228937827|ref|ZP_04100457.1| formate dehydrogenase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228970708|ref|ZP_04131350.1| formate dehydrogenase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228977285|ref|ZP_04137681.1| formate dehydrogenase [Bacillus thuringiensis Bt407] gi|228782424|gb|EEM30606.1| formate dehydrogenase [Bacillus thuringiensis Bt407] gi|228789010|gb|EEM36947.1| formate dehydrogenase [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228821862|gb|EEM67860.1| formate dehydrogenase [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326938308|gb|AEA14204.1| formate dehydrogenase alpha chain [Bacillus thuringiensis serovar chinensis CT-43] Length = 978 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + R + Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 + I+ C+ CG C CP +A++E Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|229177118|ref|ZP_04304507.1| formate dehydrogenase [Bacillus cereus 172560W] gi|228606299|gb|EEK63731.1| formate dehydrogenase [Bacillus cereus 172560W] Length = 978 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + R + Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 + I+ C+ CG C CP +A++E Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|218895646|ref|YP_002444057.1| molybdopterin oxidoreductase family protein [Bacillus cereus G9842] gi|228899276|ref|ZP_04063539.1| formate dehydrogenase [Bacillus thuringiensis IBL 4222] gi|218543549|gb|ACK95943.1| molybdopterin oxidoreductase family protein [Bacillus cereus G9842] gi|228860307|gb|EEN04704.1| formate dehydrogenase [Bacillus thuringiensis IBL 4222] Length = 978 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + R + Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 + I+ C+ CG C CP +A++E Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|218235223|ref|YP_002365387.1| molybdopterin oxidoreductase family protein [Bacillus cereus B4264] gi|218163180|gb|ACK63172.1| molybdopterin oxidoreductase family protein [Bacillus cereus B4264] Length = 978 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + R + Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 + I+ C+ CG C CP +A++E Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|310778774|ref|YP_003967107.1| nitroreductase [Ilyobacter polytropus DSM 2926] gi|309748097|gb|ADO82759.1| nitroreductase [Ilyobacter polytropus DSM 2926] Length = 273 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 16/108 (14%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 EE+CI C LC C + I + I+ + C CG C CP Sbjct: 1 MMIVNEEKCIGCGLCVKDCFPKDIELIDKKA-----------KINNVTCFKCGHCIAVCP 49 Query: 115 VDAIVEGPNFEFA---TETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 DA+ F+ + +++ D LL N ++ I + + Sbjct: 50 TDAVT-TDEFDMSEVIEYDKEKFQVDPNNLL-NFIKFRRSIRQFKDKE 95 >gi|294083652|ref|YP_003550409.1| formate dehydrogenase subunit alpha [Candidatus Puniceispirillum marinum IMCC1322] gi|292663224|gb|ADE38325.1| formate dehydrogenase alpha subunit [Candidatus Puniceispirillum marinum IMCC1322] Length = 924 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 31/98 (31%), Gaps = 3/98 (3%) Query: 25 RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC---PAQAITIE 81 +K T + + + + + CI C LC C + Sbjct: 113 SELWKYAETQDVESGRFPARMSAEPDSSHPAIAVNMDACIQCGLCVRACREVQVNDVIGL 172 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 +G D+ C+ CG C +ACP A++ Sbjct: 173 AGRGADAHIVFDFGDDMGASTCVGCGECVQACPTGALM 210 >gi|229523599|ref|ZP_04413004.1| iron-sulfur cluster-binding protein [Vibrio cholerae bv. albensis VL426] gi|229337180|gb|EEO02197.1| iron-sulfur cluster-binding protein [Vibrio cholerae bv. albensis VL426] Length = 570 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 9/75 (12%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C A+CP +A+ C+ CGLC +ACP A+ Sbjct: 435 SDCTLCMSCVAVCPTRALHPAGDSPA---------LRFIEQDCVQCGLCVKACPEQALSA 485 Query: 121 GPNFEFATETRQELY 135 P ++ RQ + Sbjct: 486 TPQLNWSKAARQGVV 500 Score = 40.9 bits (94), Expect = 0.067, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 6/54 (11%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 C+ C CPA A++ E + R I+ C G C ACP +AI Sbjct: 203 CERCVDACPAGALSSEGSDQTGH------RIQINPYLCQGVGTCATACPTEAIH 250 Score = 33.9 bits (76), Expect = 7.3, Method: Composition-based stats. Identities = 6/23 (26%), Positives = 8/23 (34%) Query: 97 DIDMIKCIYCGLCQEACPVDAIV 119 + C C C CP A+ Sbjct: 431 ECQASDCTLCMSCVAVCPTRALH 453 >gi|167771401|ref|ZP_02443454.1| hypothetical protein ANACOL_02767 [Anaerotruncus colihominis DSM 17241] gi|167666041|gb|EDS10171.1| hypothetical protein ANACOL_02767 [Anaerotruncus colihominis DSM 17241] Length = 403 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 11/63 (17%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + C+ C +C+ C AI I + ID KC+ CG C ACPVD Sbjct: 226 YVEQSVCVGCGMCKRNCAHDAIAITNRKAS-----------IDHSKCVGCGRCIGACPVD 274 Query: 117 AIV 119 A+ Sbjct: 275 AVQ 277 >gi|197120281|ref|YP_002140708.1| NADH dehydrogenase I subunit G [Geobacter bemidjiensis Bem] gi|197089641|gb|ACH40912.1| NADH dehydrogenase I, G subunit, putative [Geobacter bemidjiensis Bem] Length = 821 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 20/64 (31%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RCI C C IC + + C +CG C CPV A+ Sbjct: 143 DMNRCIHCGKCARICDEIVSYGAYTFINRGIEAKMGTEFDGPLNCEFCGSCVSVCPVGAL 202 Query: 119 VEGP 122 P Sbjct: 203 NSRP 206 >gi|83590433|ref|YP_430442.1| 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate [Moorella thermoacetica ATCC 39073] gi|83573347|gb|ABC19899.1| 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate [Moorella thermoacetica ATCC 39073] Length = 315 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 26/78 (33%), Gaps = 11/78 (14%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G ++R E C C C CP IT +M C CGL Sbjct: 247 GNWRIQRPIIDREACTECYTCWIYCPDSCITRTEEGPV-----------FNMKYCKGCGL 295 Query: 109 CQEACPVDAIVEGPNFEF 126 C CP A+ P +F Sbjct: 296 CTAVCPSGALTNVPELDF 313 >gi|296241969|ref|YP_003649456.1| indolepyruvate ferredoxin oxidoreductase subunit alpha [Thermosphaera aggregans DSM 11486] gi|296094553|gb|ADG90504.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Thermosphaera aggregans DSM 11486] Length = 636 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 24/67 (35%), Gaps = 9/67 (13%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 L Y E+C C C + A+ +E R I C CGLC Sbjct: 565 VLPVYKVDPEKCTGCLACVNLSACPALVLEPDSRKPV---------IIEELCAGCGLCAS 615 Query: 112 ACPVDAI 118 CP +AI Sbjct: 616 ICPFNAI 622 >gi|291537642|emb|CBL10754.1| 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family [Roseburia intestinalis M50/1] Length = 373 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 5/96 (5%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 ++RCI C LC++ CP + + P + G V +D C C C + CP A+V Sbjct: 265 QDRCINCGLCDSTCPD--MVFQFAPGTYKGKEAMVNQGLDYRHCKGCLRCVDVCPTHALV 322 Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRN 155 + ++ + + LL + R++ + Sbjct: 323 KAEEKDYPDKPHS---MPDQDLLPDSVRYQKTGANS 355 >gi|219667887|ref|YP_002458322.1| nitroreductase [Desulfitobacterium hafniense DCB-2] gi|219538147|gb|ACL19886.1| nitroreductase [Desulfitobacterium hafniense DCB-2] Length = 278 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 38/109 (34%), Gaps = 16/109 (14%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 E+CI C LC C I I G I +C+ CG C C Sbjct: 5 IMVNIDSEKCIGCGLCVRDCFPGKIVIVEGKA-----------QIKNKQCMQCGHCIAIC 53 Query: 114 PVDAIVEGPNFEFAT---ETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 P DA+ + A R+E D + LL N ++ + I + Sbjct: 54 PQDAVSMI-EYNMAEVKAYDRREFSVDADILL-NFIKYRRSCRQFIDKE 100 >gi|166366555|ref|YP_001658828.1| pyruvate-flavodoxin oxidoreductase [Microcystis aeruginosa NIES-843] gi|166088928|dbj|BAG03636.1| pyruvate-flavodoxin oxidoreductase [Microcystis aeruginosa NIES-843] Length = 1184 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 40/134 (29%), Gaps = 30/134 (22%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ--------------AITIESGPR 85 +TS + A + C+ C C +CP A Sbjct: 669 PTATSQWEKRNIAQEIPVWDADVCVQCGKCVLVCPHAVIRSKVYDEAELATAPETFKVAN 728 Query: 86 CHDGTRRTVRYDID--MIKCIYCGLCQEACPV--------DAIVEGPNFEFATETR--QE 133 D + +++ I C CGLC + CP AI P + R + Sbjct: 729 AKDHDWKGLKFTIQVAAEDCTGCGLCVDVCPAKNKSQPRLRAINMAPQLPLREQERVNWD 788 Query: 134 LYYDKERLLNNGDR 147 + + L N DR Sbjct: 789 FFLN----LPNPDR 798 >gi|159026286|emb|CAO88863.1| unnamed protein product [Microcystis aeruginosa PCC 7806] Length = 1184 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 40/134 (29%), Gaps = 30/134 (22%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ--------------AITIESGPR 85 +TS + A + C+ C C +CP A Sbjct: 669 PTATSQWEKRNIAQEIPVWDADVCVQCGKCVLVCPHAVIRSKVYDEVELATAPETFKVAN 728 Query: 86 CHDGTRRTVRYDID--MIKCIYCGLCQEACPV--------DAIVEGPNFEFATETR--QE 133 D + +++ I C CGLC + CP AI P + R + Sbjct: 729 AKDHDWKGLKFTIQVAAEDCTGCGLCVDVCPAKNKSQPRLRAINMAPQLPLREQERVNWD 788 Query: 134 LYYDKERLLNNGDR 147 + + L N DR Sbjct: 789 FFLN----LPNPDR 798 >gi|293607054|ref|ZP_06689397.1| benzoyl-CoA oxygenase [Achromobacter piechaudii ATCC 43553] gi|292814544|gb|EFF73682.1| benzoyl-CoA oxygenase [Achromobacter piechaudii ATCC 43553] Length = 416 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 27/67 (40%), Gaps = 11/67 (16%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 LR++ E CI C CE CP AIT +S Y +D C C C Sbjct: 9 VLRQHLIDPEICIRCNTCEETCPVDAITHDSN-----------NYVVDPDICNGCMACVP 57 Query: 112 ACPVDAI 118 CP +I Sbjct: 58 PCPTGSI 64 Score = 37.8 bits (86), Expect = 0.57, Method: Composition-based stats. Identities = 14/26 (53%), Positives = 15/26 (57%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPN 123 ID CI C C+E CPVDAI N Sbjct: 15 IDPEICIRCNTCEETCPVDAITHDSN 40 >gi|291436114|ref|ZP_06575504.1| NADH dehydrogenase I chain G [Streptomyces ghanaensis ATCC 14672] gi|291339009|gb|EFE65965.1| NADH dehydrogenase I chain G [Streptomyces ghanaensis ATCC 14672] Length = 301 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 4/75 (5%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM----IKCIYCGLCQE 111 Y ++CI C C C Q + G + + D C+YCG C E Sbjct: 160 YVRDYDKCILCYKCVDACGEQWQNTFAISVAGRGFDARIAVEHDAALTDSACVYCGNCIE 219 Query: 112 ACPVDAIVEGPNFEF 126 CP A+ F+ Sbjct: 220 VCPTGALSFKSEFDM 234 >gi|269792006|ref|YP_003316910.1| Cobyrinic acid ac-diamide synthase [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099641|gb|ACZ18628.1| Cobyrinic acid ac-diamide synthase [Thermanaerovibrio acidaminovorans DSM 6589] Length = 296 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 22/63 (34%), Gaps = 11/63 (17%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 C C C A C AI +E G +D +C CG C CP AI Sbjct: 68 RHLCEGCGRCAAACRFDAIWLEDGEV-----------RLDRRRCEGCGACAVVCPTGAIS 116 Query: 120 EGP 122 P Sbjct: 117 LSP 119 >gi|229148929|ref|ZP_04277174.1| formate dehydrogenase [Bacillus cereus m1550] gi|228634469|gb|EEK91053.1| formate dehydrogenase [Bacillus cereus m1550] Length = 978 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + R + Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 + I+ C+ CG C CP +A++E Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|256830113|ref|YP_003158841.1| response regulator receiver protein [Desulfomicrobium baculatum DSM 4028] gi|256579289|gb|ACU90425.1| response regulator receiver protein [Desulfomicrobium baculatum DSM 4028] Length = 1143 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 30/87 (34%), Gaps = 7/87 (8%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI-------TIESGPRCHDGTRRTVRY 96 +F + R +C++C C +CP + T S Y Sbjct: 98 PGKFFVSLSRRSPLVDPHKCVSCGKCSEVCPVKVPSEFNAGLTQRSAVYLPVPHAIPNHY 157 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPN 123 +D+ CI C C EACP AI Sbjct: 158 VLDLDNCIRCWKCHEACPTGAIDLKFE 184 Score = 38.9 bits (89), Expect = 0.25, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 9/55 (16%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 C C+ C A CP A T++ +D + C CG C CP A Sbjct: 1075 CSLCQACVAACPYGARTVDLE---------NELILVDEMLCQGCGACAAVCPNSA 1120 >gi|257413665|ref|ZP_04743762.2| pyruvate ferredoxin oxidoreductase gamma-delta subunit [Roseburia intestinalis L1-82] gi|257202840|gb|EEV01125.1| pyruvate ferredoxin oxidoreductase gamma-delta subunit [Roseburia intestinalis L1-82] Length = 373 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 5/96 (5%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 ++RCI C LC++ CP + + P + G V +D C C C + CP A+V Sbjct: 265 QDRCINCGLCDSTCPD--MVFQFAPGTYKGKEAMVNQGLDYRHCKGCLRCVDVCPTHALV 322 Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRN 155 + ++ + + LL + R++ + Sbjct: 323 KAEEKDYPDKPHS---MPDQDLLPDSVRYQKTGANS 355 >gi|323692877|ref|ZP_08107102.1| hypothetical protein HMPREF9475_01965 [Clostridium symbiosum WAL-14673] gi|323503052|gb|EGB18889.1| hypothetical protein HMPREF9475_01965 [Clostridium symbiosum WAL-14673] Length = 263 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 28/88 (31%), Gaps = 16/88 (18%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + CI C C C + + I+ G C+ CG C CP Sbjct: 1 MVKIEQSLCIGCAKCVKDCVSGVLHIDQGKAAVR------------ESCMQCGHCVAVCP 48 Query: 115 VDAIVEGPNFEFAT---ETRQELYYDKE 139 V A+ P ++ A + Y E Sbjct: 49 VKAVSI-PEYDMADVAEYDKDSFTYTPE 75 >gi|313898382|ref|ZP_07831919.1| 4Fe-4S binding domain protein [Clostridium sp. HGF2] gi|312956764|gb|EFR38395.1| 4Fe-4S binding domain protein [Clostridium sp. HGF2] Length = 504 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV------RYDIDMIKCIYCGLCQ 110 +E+CI C C +CP AI P + R +ID KC+ CG+C Sbjct: 145 YIDQEKCIKCGRCMDVCPYGAINKLERPCARSCGMDAITSDELGRAEIDYDKCVSCGMCL 204 Query: 111 EACPVDAI 118 CP AI Sbjct: 205 VNCPFGAI 212 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 13/61 (21%) Query: 61 ERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C C+ +CP AI++ +G ID KCI CG C + CP AI Sbjct: 118 DTCQGCLAHPCKEVCPKDAISMVNGKSY-----------IDQEKCIKCGRCMDVCPYGAI 166 Query: 119 V 119 Sbjct: 167 N 167 >gi|300785297|ref|YP_003765588.1| ferredoxin--NADP+ reductase [Amycolatopsis mediterranei U32] gi|299794811|gb|ADJ45186.1| ferredoxin--NADP+ reductase [Amycolatopsis mediterranei U32] Length = 489 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 3/59 (5%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C C ++CP I T ID + CI CG C +ACPVDAI Sbjct: 7 QTCCTDATCVSVCPVNCIHPTPDEPD---FGTTDLLYIDPVTCIDCGACADACPVDAIF 62 >gi|298528321|ref|ZP_07015725.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans ASO3-1] gi|298511973|gb|EFI35875.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans ASO3-1] Length = 615 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 38/96 (39%), Gaps = 15/96 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 L+YF K Y + R AL ++ ++C +C LC CP+ A+ + Sbjct: 534 TLKYFPKE-----YEDHIRNKKCPARKCIALVKFRVNPDKCTSCGLCHKNCPSGAVRWKK 588 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ID KCI C LC + C DAI Sbjct: 589 KQPAE----------IDPQKCIKCMLCLDKCMFDAI 614 Score = 37.0 bits (84), Expect = 0.88, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 19/53 (35%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + I + V++ ++ KC CGLC + CP A+ Sbjct: 536 KYFPKEYEDHIRNKKCPARKCIALVKFRVNPDKCTSCGLCHKNCPSGAVRWKK 588 >gi|219852666|ref|YP_002467098.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanosphaerula palustris E1-9c] gi|219546925|gb|ACL17375.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanosphaerula palustris E1-9c] Length = 368 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 11/68 (16%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C+ C +CP QAI ++ G I +CI C C CP AI Sbjct: 195 CIGCQTCLPVCPQQAIGMDEGAAL-----------ISKDRCIGCFECMTVCPERAIDVDW 243 Query: 123 NFEFATET 130 + T T Sbjct: 244 ETDIPTFT 251 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 18/70 (25%), Gaps = 3/70 (4%) Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVR---YDIDMIKCIYCGLCQEACPVDAIVEG 121 K E AI +R + CI C C CP AI Sbjct: 154 HFKGHEVAGFGGAIKNLGMGCASPAGKREQHSARPMVVRDLCIGCQTCLPVCPQQAIGMD 213 Query: 122 PNFEFATETR 131 ++ R Sbjct: 214 EGAALISKDR 223 >gi|170691834|ref|ZP_02882998.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia graminis C4D1M] gi|170143118|gb|EDT11282.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia graminis C4D1M] Length = 344 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 22/64 (34%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C LC CP AI + + C C LC CPVD I Sbjct: 124 DEHICIGCTLCMQACPVDAIVGAPK----------HMHTVVAELCTGCDLCVPPCPVDCI 173 Query: 119 VEGP 122 P Sbjct: 174 SMQP 177 Score = 37.4 bits (85), Expect = 0.63, Method: Composition-based stats. Identities = 16/31 (51%), Positives = 17/31 (54%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 ID CI C LC +ACPVDAIV P Sbjct: 123 IDEHICIGCTLCMQACPVDAIVGAPKHMHTV 153 >gi|167630826|ref|YP_001681325.1| formate dehydrogenase, alpha subunit [Heliobacterium modesticaldum Ice1] gi|167593566|gb|ABZ85314.1| formate dehydrogenase, alpha subunit [Heliobacterium modesticaldum Ice1] Length = 937 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 5/86 (5%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 YP P G ++R ++C C CE +CP+ A+T G Sbjct: 142 YPAVDVPLLPLKGGNPFIQRDE---QKCTGCGSCERLCPSTALTSLQARGSVFGETAETA 198 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEG 121 + C +CG+C CP A++E Sbjct: 199 SE--NAACDHCGICLNVCPTAALLET 222 >gi|53725521|ref|YP_103524.1| ferredoxin [Burkholderia mallei ATCC 23344] gi|76812165|ref|YP_332747.1| ferredoxin [Burkholderia pseudomallei 1710b] gi|52428944|gb|AAU49537.1| iron-sulfur cluster-binding protein [Burkholderia mallei ATCC 23344] gi|76581618|gb|ABA51093.1| electron transport complex, RnfABCDGE type, B subunit subfamily, putative [Burkholderia pseudomallei 1710b] Length = 316 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 26/81 (32%), Gaps = 10/81 (12%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 + E A E+ CI C LC CP AI + I Sbjct: 92 PLNQAHGVERARPVAFIDEQLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVAE 141 Query: 102 KCIYCGLCQEACPVDAIVEGP 122 C C LC CPVD I P Sbjct: 142 LCTGCDLCVPPCPVDCIAMIP 162 >gi|323483873|ref|ZP_08089250.1| nitroreductase [Clostridium symbiosum WAL-14163] gi|323402827|gb|EGA95148.1| nitroreductase [Clostridium symbiosum WAL-14163] Length = 263 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 28/88 (31%), Gaps = 16/88 (18%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + CI C C C + + I+ G C+ CG C CP Sbjct: 1 MVKIEQSLCIGCAKCVKDCVSGVLHIDQGKAAVR------------ESCMQCGHCVAVCP 48 Query: 115 VDAIVEGPNFEFAT---ETRQELYYDKE 139 V A+ P ++ A + Y E Sbjct: 49 VKAVSI-PEYDMADVAEYDKDSFTYTPE 75 >gi|295677023|ref|YP_003605547.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia sp. CCGE1002] gi|295436866|gb|ADG16036.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Burkholderia sp. CCGE1002] Length = 412 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 11/68 (16%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 LR++ E CI C CE CP AIT + Y + C C C Sbjct: 8 EILRQHLIDPEICIRCNTCEETCPIDAITHDDN-----------NYVVKADVCNGCMACV 56 Query: 111 EACPVDAI 118 CP AI Sbjct: 57 PPCPTGAI 64 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 13/26 (50%), Positives = 15/26 (57%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPN 123 ID CI C C+E CP+DAI N Sbjct: 15 IDPEICIRCNTCEETCPIDAITHDDN 40 >gi|253999507|ref|YP_003051570.1| RnfABCDGE type electron transport complex subunit B [Methylovorus sp. SIP3-4] gi|253986186|gb|ACT51043.1| electron transport complex, RnfABCDGE type, B subunit [Methylovorus sp. SIP3-4] Length = 299 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 30/81 (37%), Gaps = 10/81 (12%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 +P+ + + E+ CI C LC CP AI S + + Sbjct: 99 PLNPQHGVQKPKQVAFIDEQTCIGCTLCIQACPVDAILGASKQ----------MHTVIAD 148 Query: 102 KCIYCGLCQEACPVDAIVEGP 122 +C C LC CPVD I P Sbjct: 149 ECTGCELCIAPCPVDCITMQP 169 >gi|228919447|ref|ZP_04082811.1| formate dehydrogenase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228840090|gb|EEM85367.1| formate dehydrogenase [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 978 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + R + Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 + I+ C+ CG C CP +A++E Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|228963683|ref|ZP_04124826.1| formate dehydrogenase [Bacillus thuringiensis serovar sotto str. T04001] gi|228795987|gb|EEM43452.1| formate dehydrogenase [Bacillus thuringiensis serovar sotto str. T04001] Length = 974 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + R + Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 + I+ C+ CG C CP +A++E Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|229159670|ref|ZP_04287681.1| formate dehydrogenase [Bacillus cereus R309803] gi|228623821|gb|EEK80636.1| formate dehydrogenase [Bacillus cereus R309803] Length = 988 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + R + Sbjct: 133 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 190 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 + I+ C+ CG C CP +A++E Sbjct: 191 WDNGVSINDSSCVSCGQCVTVCPCNALME 219 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 99 RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 158 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 159 CIACGQCVEVC 169 >gi|223985321|ref|ZP_03635396.1| hypothetical protein HOLDEFILI_02702 [Holdemania filiformis DSM 12042] gi|223962708|gb|EEF67145.1| hypothetical protein HOLDEFILI_02702 [Holdemania filiformis DSM 12042] Length = 202 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 26/74 (35%), Positives = 30/74 (40%), Gaps = 6/74 (8%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCI 104 L R +C C C CP AI + P +R+D ID KCI Sbjct: 128 MGLHRAQIDYTKCKECGACARSCPYNAIVVTERPCSQHCPVDAIRWDENGIAQIDETKCI 187 Query: 105 YCGLCQEACPVDAI 118 CG CQ ACP AI Sbjct: 188 NCGACQAACPFGAI 201 Score = 33.9 bits (76), Expect = 7.5, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 20/64 (31%), Gaps = 5/64 (7%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGT-----RRTVRYDIDMIKCIYCGLCQEACPVDA 117 C C + + + R ID KC CG C +CP +A Sbjct: 95 CDGCTIRKIQITDNCRKCMAKACLASCKFDAISMGLHRAQIDYTKCKECGACARSCPYNA 154 Query: 118 IVEG 121 IV Sbjct: 155 IVVT 158 >gi|303249089|ref|ZP_07335331.1| hydrogenase, Fe-only [Desulfovibrio fructosovorans JJ] gi|1914864|emb|CAA72423.1| cytochrome-c3 hydrogenase [Desulfovibrio fructosovorans JJ] gi|302489504|gb|EFL49448.1| hydrogenase, Fe-only [Desulfovibrio fructosovorans JJ] Length = 421 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 28/84 (33%), Positives = 33/84 (39%), Gaps = 10/84 (11%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 +E+ P + A E +CI C C CP AIT ESG Sbjct: 11 YEQTVPPPGTNLDQAYIV-QVDETKCIGCDTCMGYCPTGAITGESGEPHKV--------- 60 Query: 98 IDMIKCIYCGLCQEACPVDAIVEG 121 +D CI CG C CPV AI E Sbjct: 61 VDPAACINCGQCLTHCPVAAIYET 84 Score = 37.0 bits (84), Expect = 0.91, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 17/45 (37%) Query: 74 PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 A+ ++ P + +D KCI C C CP AI Sbjct: 6 MAKIFYEQTVPPPGTNLDQAYIVQVDETKCIGCDTCMGYCPTGAI 50 >gi|73661910|ref|YP_300691.1| formate dehydrogenase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|123775385|sp|Q49ZN0|FDHL_STAS1 RecName: Full=Putative formate dehydrogenase SSP0601 gi|72494425|dbj|BAE17746.1| putative formate dehydrogenase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 984 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 13/96 (13%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P+EK Y +CI C C +C + R + Sbjct: 131 PYEKDYGP----------FYRYDPNQCILCGRCVEVCQDVQVNETLTIDWERQQPRVIWD 180 Query: 97 D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 + I+ C+ CG C CP +A++E A Sbjct: 181 NDTSINDSSCVGCGQCATVCPCNAMLEVNMEGNAGY 216 Score = 42.8 bits (99), Expect = 0.018, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 17/68 (25%), Gaps = 8/68 (11%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIE----SGPRCHDGTRRTVRYDIDMIKCIY 105 R C C CE +E Y D +CI Sbjct: 90 RILEKHMLYCTVCDYNNGDCEIHNTMDQWGLEHQTYEYKEKPYEKDYGPFYRYDPNQCIL 149 Query: 106 CGLCQEAC 113 CG C E C Sbjct: 150 CGRCVEVC 157 >gi|330995605|ref|ZP_08319505.1| electron transfer flavoprotein FAD-binding domain protein [Paraprevotella xylaniphila YIT 11841] gi|329575011|gb|EGG56564.1| electron transfer flavoprotein FAD-binding domain protein [Paraprevotella xylaniphila YIT 11841] Length = 404 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 12/64 (18%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 +CI+C +C C AI + P C CG C +ACPV A V Sbjct: 17 QCISCGICAESCAYGAIRMGDFPEVD------------EENCRLCGGCVQACPVGAWVMQ 64 Query: 122 PNFE 125 E Sbjct: 65 RQDE 68 Score = 37.4 bits (85), Expect = 0.73, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 17/45 (37%) Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 + + +CI CG+C E+C AI G E E Sbjct: 1 MKMNKDKDFILQLQAGQCISCGICAESCAYGAIRMGDFPEVDEEN 45 >gi|322418857|ref|YP_004198080.1| electron transfer flavoprotein alpha/beta-subunit [Geobacter sp. M18] gi|320125244|gb|ADW12804.1| Electron transfer flavoprotein alpha/beta-subunit [Geobacter sp. M18] Length = 441 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 16/81 (19%) Query: 42 STSPRFRGEHALRRYPNGEERCIACK-LCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100 + RG+ L E +CIAC C++ CP AI + ID Sbjct: 6 KPPKKPRGKATLL-----ENKCIACGARCQSACPVDAIQMNDAGEP----------IIDA 50 Query: 101 IKCIYCGLCQEACPVDAIVEG 121 +CI C C + CPV A+ Sbjct: 51 SRCIGCVKCVKVCPVQALEMS 71 >gi|229188797|ref|ZP_04315832.1| formate dehydrogenase [Bacillus cereus ATCC 10876] gi|228594698|gb|EEK52482.1| formate dehydrogenase [Bacillus cereus ATCC 10876] Length = 978 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + R + Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 + I+ C+ CG C CP +A++E Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|206967976|ref|ZP_03228932.1| molybdopterin oxidoreductase family protein [Bacillus cereus AH1134] gi|206736896|gb|EDZ54043.1| molybdopterin oxidoreductase family protein [Bacillus cereus AH1134] Length = 978 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + R + Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 + I+ C+ CG C CP +A++E Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|84686203|ref|ZP_01014098.1| NAD-dependent formate dehydrogenase, alpha subunit [Maritimibacter alkaliphilus HTCC2654] gi|84665730|gb|EAQ12205.1| NAD-dependent formate dehydrogenase, alpha subunit [Rhodobacterales bacterium HTCC2654] Length = 971 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 29/82 (35%), Gaps = 4/82 (4%) Query: 55 RYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + +CI C C C A+TIE + D C+ CG C Sbjct: 184 YFTYDPAKCIVCSRCVRACEEVQGTFALTIEGRGFDSRVSAGGAMDDFLSSDCVSCGACV 243 Query: 111 EACPVDAIVEGPNFEFATETRQ 132 +ACP + E E T TR Sbjct: 244 QACPTATLQEKSVAELGTPTRS 265 >gi|99080237|ref|YP_612391.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ruegeria sp. TM1040] gi|99036517|gb|ABF63129.1| 4Fe-4S ferredoxin iron-sulfur binding [Ruegeria sp. TM1040] Length = 652 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 9/82 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C C ++CP+ A+ + C+ CGLC ACP DAI Sbjct: 500 DTDACTLCLSCVSLCPSGALGDNED---------LPQLRFQEDACLQCGLCANACPEDAI 550 Query: 119 VEGPNFEFATETRQELYYDKER 140 P A ++ ++E Sbjct: 551 TFAPRLNLAPSALDQIVLNEEE 572 Score = 37.4 bits (85), Expect = 0.76, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 18/55 (32%), Gaps = 11/55 (20%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C CP AIT ID + C CG C CP AI Sbjct: 279 TGCTRCLDACPTGAITPNGDSVA-----------IDPMICAGCGACASLCPSGAI 322 >gi|325295599|ref|YP_004282113.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfurobacterium thermolithotrophum DSM 11699] gi|325066047|gb|ADY74054.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfurobacterium thermolithotrophum DSM 11699] Length = 58 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 27/65 (41%), Gaps = 10/65 (15%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + E CI C C ++CP AI + Y+I CI CG C E C Sbjct: 1 MAHKIDPELCIGCGACASVCPTNAIHPTDDGK----------YEIVPEDCIDCGACVEVC 50 Query: 114 PVDAI 118 P DAI Sbjct: 51 PTDAI 55 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 2/37 (5%) Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPN--FEFATET 130 + ID CI CG C CP +AI + +E E Sbjct: 3 HKIDPELCIGCGACASVCPTNAIHPTDDGKYEIVPED 39 >gi|229101345|ref|ZP_04232089.1| formate dehydrogenase [Bacillus cereus Rock3-28] gi|228682050|gb|EEL36183.1| formate dehydrogenase [Bacillus cereus Rock3-28] Length = 978 Score = 50.5 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + + R + Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWNLDRPRVI 182 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 + I+ C+ CG C CP +A++E Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211 Score = 40.5 bits (93), Expect = 0.084, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKVHNTVHMMEIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|310643155|ref|YP_003947913.1| molybdopterin oxidoreductase family protein [Paenibacillus polymyxa SC2] gi|309248105|gb|ADO57672.1| Molybdopterin oxidoreductase family protein [Paenibacillus polymyxa SC2] Length = 980 Score = 50.5 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+ + + Y +CIAC C +C + R Sbjct: 123 HQKYPY--RPKVDPTEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSLDWEAERPR 180 Query: 93 TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120 + + I+ C+ CG C CP +A++E Sbjct: 181 VIWDEGVAINDSSCVSCGQCVTVCPCNALME 211 Score = 38.5 bits (88), Expect = 0.27, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 22/71 (30%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ A+ + IE + Y D + Sbjct: 91 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYRPKVDPTEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|310827037|ref|YP_003959394.1| hypothetical protein ELI_1445 [Eubacterium limosum KIST612] gi|308738771|gb|ADO36431.1| hypothetical protein ELI_1445 [Eubacterium limosum KIST612] Length = 259 Score = 50.5 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 26/79 (32%), Gaps = 11/79 (13%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 E+CI C LCE C A I +E G + CI CG C C Sbjct: 7 HHIKIDREKCIGCGLCEKDCVAHNIALEDGKA-----------RVRAQDCILCGHCVAVC 55 Query: 114 PVDAIVEGPNFEFATETRQ 132 P A+ E R Sbjct: 56 PKAAVAISGYGEAPVPDRG 74 >gi|291532647|emb|CBL05760.1| Uncharacterized conserved protein [Megamonas hypermegale ART12/1] Length = 331 Score = 50.5 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 34/96 (35%), Gaps = 12/96 (12%) Query: 28 FKAKTTINY-PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC 86 F T G++ L P + C+AC C CP +AITI Sbjct: 233 FAKPHTYKSMQDTYVPKFILKLGQNQLTSKPVINKNCVACGRCSHHCPPKAITIIDKKV- 291 Query: 87 HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 +ID KCI C CQE CP A+ Sbjct: 292 ----------NIDYQKCIRCYCCQELCPHQAVDLKD 317 >gi|288932026|ref|YP_003436086.1| ferredoxin-dependent glutamate synthase [Ferroglobus placidus DSM 10642] gi|288894274|gb|ADC65811.1| ferredoxin-dependent glutamate synthase [Ferroglobus placidus DSM 10642] Length = 479 Score = 50.5 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 22/63 (34%), Gaps = 10/63 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +RCI C C CP +A+ E C+ CG C + CP AI Sbjct: 8 DRDRCIKCLRCVRYCPTEALGEEDKMPVVKKQ----------TACVGCGNCVDVCPAYAI 57 Query: 119 VEG 121 Sbjct: 58 QVS 60 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 10/25 (40%), Positives = 13/25 (52%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 ID +CI C C CP +A+ E Sbjct: 7 IDRDRCIKCLRCVRYCPTEALGEED 31 >gi|228916202|ref|ZP_04079772.1| formate dehydrogenase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228843400|gb|EEM88478.1| formate dehydrogenase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 954 Score = 50.5 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+E + Y +CIAC C +C + R Sbjct: 98 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 155 Query: 93 TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120 + + I+ C+ CG C CP +A++E Sbjct: 156 VIWDEGVSINDSSCVSCGQCVTICPCNALME 186 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 66 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 125 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 126 CIACGQCVEVC 136 >gi|147678983|ref|YP_001213198.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit [Pelotomaculum thermopropionicum SI] gi|146275080|dbj|BAF60829.1| NADH:ubiquinone oxidoreductase, NADH-binding 51 kD subunit [Pelotomaculum thermopropionicum SI] Length = 617 Score = 50.5 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 10/68 (14%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 AL Y +E+C C C CPA AI E + ID+ KCI CG C + Sbjct: 558 ALLVYVIDQEKCTGCGACARACPAGAIAGEKKQP----------HVIDVEKCIKCGSCIQ 607 Query: 112 ACPVDAIV 119 C +AI Sbjct: 608 KCKFEAIY 615 Score = 42.4 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 8/62 (12%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 I + Y ID KC CG C ACP AI A E +Q D Sbjct: 545 HIVDKRCPAGVCSALLVYVIDQEKCTGCGACARACPAGAI--------AGEKKQPHVIDV 596 Query: 139 ER 140 E+ Sbjct: 597 EK 598 >gi|20093897|ref|NP_613744.1| ferredoxin [Methanopyrus kandleri AV19] gi|19886838|gb|AAM01674.1| Ferredoxin [Methanopyrus kandleri AV19] Length = 252 Score = 50.5 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 34/102 (33%), Positives = 45/102 (44%), Gaps = 13/102 (12%) Query: 31 KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT 90 + T + K R + LR+ ++RCIAC+LCE ICP +A I+ Sbjct: 103 RVTKDSIEVKLEEVDVIRRKFVLRKAILRKDRCIACRLCEQICPVEAPNIDK-------- 154 Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 ID KCI C C+ ACPVDAIV R+ Sbjct: 155 -----LRIDEDKCIGCKACEHACPVDAIVIERTLTPPEFERE 191 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 3/79 (3%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + + E++CI CK CE CP AI IE + R ++D CI C +C E Sbjct: 152 IDKLRIDEDKCIGCKACEHACPVDAIVIERTLTPPEFER---EIELDQDMCIGCEVCVEV 208 Query: 113 CPVDAIVEGPNFEFATETR 131 CPVDA+ + + R Sbjct: 209 CPVDAVEMEGDVANISYDR 227 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 16/82 (19%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E+ T P F E L ++ CI C++C +CP A+ +E +I Sbjct: 180 ERTLTPPEFEREIEL-----DQDMCIGCEVCVEVCPVDAVEMEGD-----------VANI 223 Query: 99 DMIKCIYCGLCQEACPVDAIVE 120 +CI CG C CP AI Sbjct: 224 SYDRCIRCGECARNCPTGAIKI 245 Score = 38.2 bits (87), Expect = 0.41, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 9/60 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ERC+ CK C CP A+T ++D C+ C LC ++CPVDAI Sbjct: 45 DPERCVGCKTCYEECPVDALTEPDSTNPP---------EVDHDACVRCRLCAKSCPVDAI 95 Score = 33.9 bits (76), Expect = 8.0, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 15/74 (20%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---------------IDMIKC 103 + C+ C+LC CP AI + SG V+ + + +C Sbjct: 76 DHDACVRCRLCAKSCPVDAIKVVSGEARVTKDSIEVKLEEVDVIRRKFVLRKAILRKDRC 135 Query: 104 IYCGLCQEACPVDA 117 I C LC++ CPV+A Sbjct: 136 IACRLCEQICPVEA 149 >gi|309775984|ref|ZP_07670976.1| Fe-hydrogenase large subunit family protein [Erysipelotrichaceae bacterium 3_1_53] gi|308916266|gb|EFP62014.1| Fe-hydrogenase large subunit family protein [Erysipelotrichaceae bacterium 3_1_53] Length = 504 Score = 50.5 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV------RYDIDMIKCIYCGLCQ 110 +E+CI C C +CP AI P + R +ID KC+ CG+C Sbjct: 145 YIDQEKCIKCGRCMDVCPYGAINKLERPCARSCGMDAITSDELGRAEIDYDKCVSCGMCL 204 Query: 111 EACPVDAI 118 CP AI Sbjct: 205 VNCPFGAI 212 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 13/61 (21%) Query: 61 ERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C C+ +CP AI++ +G ID KCI CG C + CP AI Sbjct: 118 DTCQGCLAHPCKEVCPKDAISMVNGKSY-----------IDQEKCIKCGRCMDVCPYGAI 166 Query: 119 V 119 Sbjct: 167 N 167 >gi|301059352|ref|ZP_07200279.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] gi|300446581|gb|EFK10419.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] Length = 616 Score = 50.5 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 15/96 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 L+Y F+ + + ++ L Y E+C C LC+ C AI+ E Sbjct: 533 TLKY-FREEYIAHIKEKRCPAGVC----KQLIVYAIDPEKCTGCGLCKKNCAFGAISGEK 587 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ID KC+ CG+C C A+ Sbjct: 588 KAPHA----------IDPEKCVKCGMCLTKCKFGAV 613 >gi|229095238|ref|ZP_04226230.1| formate dehydrogenase [Bacillus cereus Rock3-29] gi|229114186|ref|ZP_04243607.1| formate dehydrogenase [Bacillus cereus Rock1-3] gi|228669206|gb|EEL24627.1| formate dehydrogenase [Bacillus cereus Rock1-3] gi|228688097|gb|EEL41983.1| formate dehydrogenase [Bacillus cereus Rock3-29] Length = 978 Score = 50.5 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + + R + Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWNLDRPRVI 182 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 + I+ C+ CG C CP +A++E Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211 Score = 40.5 bits (93), Expect = 0.087, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKVHNTVHMMEIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|170745440|ref|YP_001766897.1| formate dehydrogenase, alpha subunit [Methylobacterium radiotolerans JCM 2831] gi|170659041|gb|ACB28095.1| formate dehydrogenase, alpha subunit [Methylobacterium radiotolerans JCM 2831] Length = 989 Score = 50.5 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 3/87 (3%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRY 96 + + R+ G+ + + CI C LC C Q + G + + Sbjct: 188 ESRFPAAERWTGDFSHPAMSVNLDACIQCNLCVRACREVQVNDVIGMAYRSAGAKVVFDF 247 Query: 97 DIDM--IKCIYCGLCQEACPVDAIVEG 121 D M C+ CG C +ACP A++ Sbjct: 248 DDPMGGSTCVACGECVQACPTGALMPS 274 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 1/56 (1%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL-CQ 110 P G C+AC C CP A+ + TR C YCG+ CQ Sbjct: 249 DPMGGSTCVACGECVQACPTGALMPSAYLDAEHKTRTVYPDREVTSLCPYCGVGCQ 304 >gi|160888747|ref|ZP_02069750.1| hypothetical protein BACUNI_01165 [Bacteroides uniformis ATCC 8492] gi|270293523|ref|ZP_06199725.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides sp. D20] gi|317479507|ref|ZP_07938638.1| ferredoxin oxidoreductase [Bacteroides sp. 4_1_36] gi|156861646|gb|EDO55077.1| hypothetical protein BACUNI_01165 [Bacteroides uniformis ATCC 8492] gi|270274990|gb|EFA20850.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides sp. D20] gi|316904327|gb|EFV26150.1| ferredoxin oxidoreductase [Bacteroides sp. 4_1_36] Length = 1185 Score = 50.5 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 32/90 (35%), Gaps = 15/90 (16%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGP 84 E+G+ RG A N E CI C C +CP A + Sbjct: 667 EQGTAKYEKRGVAAFVPEWN-AENCIQCNKCAYVCPHASIRPFVLDAEEQKGANFTQLKA 725 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 T R +D++ C+ CG C + CP Sbjct: 726 VGKAFDGMTFRIQVDVLDCLGCGNCADVCP 755 >gi|116253448|ref|YP_769286.1| dihydropyrimidine dehydrogenase [Rhizobium leguminosarum bv. viciae 3841] gi|115258096|emb|CAK09197.1| putative dihydropyrimidine dehydrogenase [Rhizobium leguminosarum bv. viciae 3841] Length = 437 Score = 50.5 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 6/94 (6%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI C C A S + +++ +C+ Sbjct: 330 QYLNLNYIAKAKIDQDACIKCGRCYI-----ACEDTSHQAITNFVDGVRHFEVMDEECVG 384 Query: 106 CGLCQEACPV-DAIVEGPNFEFATETRQELYYDK 138 C LC CPV + I A + R D Sbjct: 385 CNLCVSVCPVENCITMEQLPAGALDKRTGRVVDP 418 >gi|13471617|ref|NP_103183.1| dihydropyrimidine dehydrogenase [Mesorhizobium loti MAFF303099] gi|14022359|dbj|BAB48969.1| probable oxidoreductase [Mesorhizobium loti MAFF303099] Length = 437 Score = 50.5 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 6/78 (7%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI C C A S +++ +C+ Sbjct: 330 QYLNLNYVAKAHIDQDACIKCGRCHI-----ACEDTSHQAITSMVDGVRHFEVIEAECVG 384 Query: 106 CGLCQEACPV-DAIVEGP 122 C LC CPV + I P Sbjct: 385 CNLCVNVCPVENCITMEP 402 >gi|303242577|ref|ZP_07329054.1| hydrogenase, Fe-only [Acetivibrio cellulolyticus CD2] gi|302589881|gb|EFL59652.1| hydrogenase, Fe-only [Acetivibrio cellulolyticus CD2] Length = 566 Score = 50.5 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 26/72 (36%), Gaps = 3/72 (4%) Query: 55 RYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQE 111 + +CI C C +C Q + + +D I C+ CG C Sbjct: 140 CITRDQNKCILCGDCVRVCNEVQNVGAIDFGYRGSKMKICTAFDKPIAQSNCVGCGQCAL 199 Query: 112 ACPVDAIVEGPN 123 ACP AIV N Sbjct: 200 ACPTGAIVIKNN 211 >gi|239927772|ref|ZP_04684725.1| NADH dehydrogenase I chain G [Streptomyces ghanaensis ATCC 14672] Length = 286 Score = 50.5 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 4/75 (5%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM----IKCIYCGLCQE 111 Y ++CI C C C Q + G + + D C+YCG C E Sbjct: 145 YVRDYDKCILCYKCVDACGEQWQNTFAISVAGRGFDARIAVEHDAALTDSACVYCGNCIE 204 Query: 112 ACPVDAIVEGPNFEF 126 CP A+ F+ Sbjct: 205 VCPTGALSFKSEFDM 219 >gi|126652326|ref|ZP_01724502.1| hypothetical protein BB14905_00250 [Bacillus sp. B14905] gi|126590901|gb|EAZ85014.1| hypothetical protein BB14905_00250 [Bacillus sp. B14905] Length = 978 Score = 50.5 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP++ + + Y +CIAC C +C + + R Sbjct: 119 HQKYPYKPKVEP--HEVDMSHPFYRYDPNQCIACGQCVEVCQSLQVNETLSLDWEAERPR 176 Query: 93 TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120 + I+ C+ CG C CP +A++E Sbjct: 177 VIWDTGVAINDSSCVSCGQCVTVCPCNALME 207 Score = 38.2 bits (87), Expect = 0.43, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C Q + H+ Y D + Sbjct: 87 RLLENHLLYCTVCDNNNGNCTLHNTAELMEIEHQKYPYKPKVEPHEVDMSHPFYRYDPNQ 146 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 147 CIACGQCVEVC 157 >gi|118478818|ref|YP_895969.1| formate dehydrogenase, subunit alpha [Bacillus thuringiensis str. Al Hakam] gi|118418043|gb|ABK86462.1| formate dehydrogenase, alpha subunit [Bacillus thuringiensis str. Al Hakam] Length = 1012 Score = 50.5 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+E + Y +CIAC C +C + R Sbjct: 156 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 213 Query: 93 TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120 + + I+ C+ CG C CP +A++E Sbjct: 214 VIWDEGVSINDSSCVSCGQCVTICPCNALME 244 Score = 39.3 bits (90), Expect = 0.16, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 124 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 183 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 184 CIACGQCVEVC 194 >gi|113970403|ref|YP_734196.1| electron transport complex protein RnfC [Shewanella sp. MR-4] gi|113885087|gb|ABI39139.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella sp. MR-4] Length = 809 Score = 50.5 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 42/126 (33%), Gaps = 11/126 (8%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 TI P KG+ + P + CI C C A P+ + Sbjct: 349 TIQVPILKGTNCILVPSSQEIGTTPEE-KACIRCGECA-----NACPALLLPQQLFWHAK 402 Query: 93 TVRYD----IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRW 148 YD ++ CI CG C CP I + A ++ +K + R+ Sbjct: 403 AEEYDKAASYNLKDCIECGCCSYVCP-SDIPLVEYYRIAKSALKQAADEKHQAERAKLRF 461 Query: 149 ESEIVR 154 E+ I R Sbjct: 462 EARIQR 467 >gi|114047405|ref|YP_737955.1| electron transport complex protein RnfC [Shewanella sp. MR-7] gi|113888847|gb|ABI42898.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella sp. MR-7] Length = 799 Score = 50.5 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 42/126 (33%), Gaps = 11/126 (8%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 TI P KG+ + P + CI C C A P+ + Sbjct: 349 TIQVPILKGTNCILVPSSQEIGTTPEE-KACIRCGECA-----NACPALLLPQQLFWHAK 402 Query: 93 TVRYD----IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRW 148 YD ++ CI CG C CP I + A ++ +K + R+ Sbjct: 403 AEEYDKAASYNLKDCIECGCCSYVCP-SDIPLVEYYRIAKSALKQAADEKHQAERAKLRF 461 Query: 149 ESEIVR 154 E+ I R Sbjct: 462 EARIQR 467 >gi|325958330|ref|YP_004289796.1| glutamate synthase (NADPH) [Methanobacterium sp. AL-21] gi|325329762|gb|ADZ08824.1| Glutamate synthase (NADPH) [Methanobacterium sp. AL-21] Length = 503 Score = 50.5 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 32/96 (33%), Gaps = 15/96 (15%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 EE C C C CP I Y + C+ C +C+E C Sbjct: 25 MCDNRDEELCKNCYSCFNNCPHDVYEIIDDEP----------YPLHHENCVGCRICEEMC 74 Query: 114 PVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWE 149 P +AI E R+ + + ++ G + E Sbjct: 75 PNNAI----EVNAVPEDRRN-VWTQSDIVEIGRKSE 105 >gi|228932018|ref|ZP_04094910.1| formate dehydrogenase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228827601|gb|EEM73343.1| formate dehydrogenase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 978 Score = 50.5 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + R + Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 I+ C+ CG C CP +A++E Sbjct: 183 WDHGVSINDSSCVSCGQCVTVCPCNALME 211 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|169351005|ref|ZP_02867943.1| hypothetical protein CLOSPI_01782 [Clostridium spiroforme DSM 1552] gi|169292067|gb|EDS74200.1| hypothetical protein CLOSPI_01782 [Clostridium spiroforme DSM 1552] Length = 507 Score = 50.5 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110 +++CI C LC+ CP AI + P + D I+ KC+ CG+C Sbjct: 144 YIDQDKCIKCGLCKNNCPYDAILKKERPCAKACGMNAIESDEYGNAHINYDKCVSCGMCL 203 Query: 111 EACPVDAI 118 +CP AI Sbjct: 204 VSCPFGAI 211 Score = 42.4 bits (98), Expect = 0.022, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 28/92 (30%), Gaps = 11/92 (11%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEER------CIACKLCEAICPAQAITIESGPRCHDGTR 91 E S +Y C C+ + + P + Sbjct: 74 DEPAPISKGIEESIIADKYYEPPLINIIKFACNKCEENKYEVSNGCQACLAHPCIEICPK 133 Query: 92 RTVRYD-----IDMIKCIYCGLCQEACPVDAI 118 + + ID KCI CGLC+ CP DAI Sbjct: 134 NAISFKNGKAYIDQDKCIKCGLCKNNCPYDAI 165 >gi|157364729|ref|YP_001471496.1| dihydroorotate dehydrogenase [Thermotoga lettingae TMO] gi|157315333|gb|ABV34432.1| dihydroorotate dehydrogenase [Thermotoga lettingae TMO] Length = 386 Score = 50.5 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 25/83 (30%), Gaps = 12/83 (14%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 K S L + + C +C C+ +C A + Sbjct: 311 KAILSNEQIDRRHLFKAQINQALCTSCGTCQKVCIYDAPYQSEKS------------YVI 358 Query: 100 MIKCIYCGLCQEACPVDAIVEGP 122 C CGLC + CPV AI Sbjct: 359 SELCDGCGLCVKLCPVKAIEMVK 381 >gi|123426665|ref|XP_001307088.1| pyruvate:ferredoxin oxidoreductase C [Trichomonas vaginalis G3] gi|121888697|gb|EAX94158.1| pyruvate:ferredoxin oxidoreductase C [Trichomonas vaginalis G3] Length = 1189 Score = 50.5 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 49/146 (33%), Gaps = 19/146 (13%) Query: 31 KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE-------SG 83 T P + +S + A ++CI C C C I + Sbjct: 673 PITARIPRDGLGSSKYEKRGIATNIPVWDADKCIQCNTCAYSCAHAVIRPQLMKHGKGPE 732 Query: 84 PRCHDGTRRTVRYD----IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE---TRQELYY 136 +++ YD + C+ C +C E CP A+ F ATE T+ Y Sbjct: 733 GVKVLQSKKFKGYDFAITVSAHDCLSCQVCIEKCPTKALS----FPLATEEVVTKAAALY 788 Query: 137 DK-ERLLNNGDRWESEIVRNIVTDSP 161 DK +L + E++ N + Sbjct: 789 DKFAKLPDIDALREADPALNESLEKK 814 >gi|5650750|emb|CAB51635.1| putative NADH-ubiquinone oxidoreductase subunit [Sinorhizobium meliloti] Length = 853 Score = 50.5 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 3/80 (3%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 + S R + N RCI C+ C +C + G ++ Sbjct: 128 RVFHSKDIRLSPVIIMNVN---RCIQCQRCVRMCEEVVGAVALGTVEKGMDTAVTGFEGS 184 Query: 100 MIKCIYCGLCQEACPVDAIV 119 + C CG C E CPV A++ Sbjct: 185 LASCDQCGNCVEVCPVGALM 204 >gi|78358241|ref|YP_389690.1| iron-sulfur cluster-binding/ATPase domain-containing protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220646|gb|ABB39995.1| iron-sulfur cluster-binding/ATPase domain protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 308 Score = 50.5 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 15/89 (16%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93 I P + + +A + CI C C C A+T+ + + Sbjct: 44 ILQPEVRRTV-----DFYAGQLASVDPLLCIGCGSCADHCRFDAVTVAADGK-------- 90 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + I C C +C CP A+ Sbjct: 91 --WQIRPEFCEGCAVCLHVCPAQAVTMND 117 >gi|159116967|ref|XP_001708704.1| Pyruvate-flavodoxin oxidoreductase [Giardia lamblia ATCC 50803] gi|960283|gb|AAA74894.1| pyruvate:ferredoxin oxidoreductase [Giardia intestinalis] gi|157436817|gb|EDO81030.1| Pyruvate-flavodoxin oxidoreductase [Giardia lamblia ATCC 50803] Length = 1253 Score = 50.5 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 33/105 (31%), Gaps = 32/105 (30%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK------------------ 102 E CI C C CP A+ +++ +K Sbjct: 722 ENCIQCGFCSVQCPHAAVRCFVMNEDAKPDNVPEDFEMLDMKGKLAAVNSDSSKIKFRVQ 781 Query: 103 -----CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLL 142 C CG+C EACP DA+ P + DK++ L Sbjct: 782 VSPLDCRGCGVCVEACPKDALAMTPI---------DTVLDKQQKL 817 >gi|24375983|ref|NP_720026.1| iron-sulfur cluster-binding protein [Shewanella oneidensis MR-1] gi|24350982|gb|AAN57470.1|AE015883_1 iron-sulfur cluster-binding protein [Shewanella oneidensis MR-1] Length = 558 Score = 50.5 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 30/82 (36%), Gaps = 9/82 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+C C C AICP A+ C+ CGLC+ ACP I Sbjct: 424 NVEKCTLCMSCVAICPTMALQDGGDKPALH---------FIEQNCVQCGLCESACPEKVI 474 Query: 119 VEGPNFEFATETRQELYYDKER 140 P F RQ+ + KE Sbjct: 475 SLTPQINFDKAARQQQHTLKEE 496 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 11/53 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C CPA AI+ + ++D C G C CP AI Sbjct: 200 CNRCLNFCPADAISSVAKK-----------IEVDPYLCHGAGSCASTCPTGAI 241 >gi|330998795|ref|ZP_08322523.1| 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family [Parasutterella excrementihominis YIT 11859] gi|329576292|gb|EGG57808.1| 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family [Parasutterella excrementihominis YIT 11859] Length = 468 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 21/62 (33%), Gaps = 8/62 (12%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C+ C C +CP A+ Y + C CG+C CP AI Sbjct: 413 NCLQCDNCYGVCPDNAVIKTGDDNVP--------YIFNYDYCKGCGVCASECPCGAIKME 464 Query: 122 PN 123 P Sbjct: 465 PE 466 >gi|325281877|ref|YP_004254419.1| Fe-S cluster domain-containing protein [Odoribacter splanchnicus DSM 20712] gi|324313686|gb|ADY34239.1| Fe-S cluster domain protein [Odoribacter splanchnicus DSM 20712] Length = 568 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 25/65 (38%), Gaps = 11/65 (16%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L+ E C C C CP +AI IE I +CIYCG C + Sbjct: 3 LKPIYTEPENCQDCYKCVRECPVKAIQIEDNKAY-----------IIEERCIYCGHCTQV 51 Query: 113 CPVDA 117 CP A Sbjct: 52 CPTGA 56 Score = 34.7 bits (78), Expect = 4.9, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 12/32 (37%) Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 C C C CPV AI N + E R Sbjct: 10 PENCQDCYKCVRECPVKAIQIEDNKAYIIEER 41 >gi|313681399|ref|YP_004059137.1| NADH dehydrogenase subunit g [Sulfuricurvum kujiense DSM 16994] gi|313154259|gb|ADR32937.1| NADH dehydrogenase subunit G [Sulfuricurvum kujiense DSM 16994] Length = 751 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 1/83 (1%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 + R CI C+ C +C + + + D + C Sbjct: 127 DQHRKIEHWGLINYDPSLCILCEKCVHVCNEIIGDDAIELQFGGYKSSVIPKNSDALDCT 186 Query: 105 YCGLCQEACPVDAIVEGPNFEFA 127 +CG C CPV A+V NF+++ Sbjct: 187 FCGECIAVCPVGALV-SSNFQYS 208 >gi|228934847|ref|ZP_04097678.1| formate dehydrogenase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228824747|gb|EEM70548.1| formate dehydrogenase [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 954 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+E + Y +CIAC C +C + R Sbjct: 98 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 155 Query: 93 TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120 + + I+ C+ CG C CP +A++E Sbjct: 156 VIWDEGVSINDSSCVSCGQCVTICPCNALME 186 Score = 39.3 bits (90), Expect = 0.16, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 66 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 125 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 126 CIACGQCVEVC 136 >gi|169828796|ref|YP_001698954.1| formate dehydrogenase subunit alpha [Lysinibacillus sphaericus C3-41] gi|168993284|gb|ACA40824.1| Formate dehydrogenase alpha chain [Lysinibacillus sphaericus C3-41] Length = 978 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP++ + + Y +CIAC C +C + + R Sbjct: 119 HQKYPYKPKVEP--HEVDMSHPFYRYDPNQCIACGQCVEVCQSLQVNETLSLDWEAERPR 176 Query: 93 TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120 + I+ C+ CG C CP +A++E Sbjct: 177 VIWDTGVAINDSSCVSCGQCVTVCPCNALME 207 Score = 38.2 bits (87), Expect = 0.44, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C Q + H+ Y D + Sbjct: 87 RLLENHLLYCTVCDNNNGNCTLHNTAELMEIEHQKYPYKPKVEPHEVDMSHPFYRYDPNQ 146 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 147 CIACGQCVEVC 157 >gi|146342635|ref|YP_001207683.1| putative glutamate synthase (NADPH) 2-ketoglutarate NADP oxidoreductase subunit gamma (korC-like) [Bradyrhizobium sp. ORS278] gi|146195441|emb|CAL79466.1| putative glutamate synthase (NADPH); putative 2-ketoglutarate: NADP oxidoreductase, gamma subunit (korC-like) [Bradyrhizobium sp. ORS278] Length = 599 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 30/107 (28%), Gaps = 20/107 (18%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 K + R + + CI C C ICP IT D R Sbjct: 475 DVKLALGEAHRCLNCDVQTVFSNTLCIECDACADICPMDCITFTENGEEADLRSRLKAPS 534 Query: 98 IDMIK--------------------CIYCGLCQEACPVDAIVEGPNF 124 + + C++CGLC E CP A F Sbjct: 535 VHPDQSLYVSSDLKTGRVMVKDEDVCLHCGLCAERCPTGAWDMQKYF 581 Score = 34.7 bits (78), Expect = 4.2, Method: Composition-based stats. Identities = 11/26 (42%), Positives = 13/26 (50%) Query: 103 CIYCGLCQEACPVDAIVEGPNFEFAT 128 CI C C + CP+D I N E A Sbjct: 500 CIECDACADICPMDCITFTENGEEAD 525 >gi|330889574|gb|EGH22235.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv. mori str. 301020] Length = 290 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 10/75 (13%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 RG + E CI C C CP AI + + + + + +C C Sbjct: 76 RGAAPAQVAFIREAECIGCTKCIQACPVDAIVGAAK----------LMHTVIVDECTGCD 125 Query: 108 LCQEACPVDAIVEGP 122 LC CPVD I P Sbjct: 126 LCVAPCPVDCIEMHP 140 >gi|320161182|ref|YP_004174406.1| NAD-reducing hydrogenase subunit [Anaerolinea thermophila UNI-1] gi|319995035|dbj|BAJ63806.1| NAD-reducing hydrogenase subunit [Anaerolinea thermophila UNI-1] Length = 594 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 39/96 (40%), Gaps = 15/96 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 L+YF + +EK + R AL Y E C C +C CP AIT E Sbjct: 511 TLKYFRHEY--EAHIYEKRCPAKVCR---ALITYEIVPETCTGCTVCARNCPVNAITGE- 564 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 R + ID C+ CG+C + C +AI Sbjct: 565 ---------RRQPHKIDPDICVRCGICMQVCNFNAI 591 >gi|322421844|ref|YP_004201067.1| molybdopterin oxidoreductase [Geobacter sp. M18] gi|320128231|gb|ADW15791.1| molybdopterin oxidoreductase [Geobacter sp. M18] Length = 821 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 20/64 (31%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RCI C C IC + + C +CG C CPV A+ Sbjct: 143 DMNRCIHCGKCARICDEIVSYGAYTFINRGIEAKMGTEFDGPLNCEFCGSCVSVCPVGAL 202 Query: 119 VEGP 122 P Sbjct: 203 NSRP 206 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 14/74 (18%), Positives = 18/74 (24%), Gaps = 8/74 (10%) Query: 48 RGEHALRRYPNGEERCIAC---KLC-----EAICPAQAITIESGPRCHDGTRRTVRYDID 99 R C C C A H+ + D Sbjct: 84 RKLVLELLLLKHPIDCPVCDAAGDCDLQNLTYEYKVNANRFTDEKFNHEIDYENPLIERD 143 Query: 100 MIKCIYCGLCQEAC 113 M +CI+CG C C Sbjct: 144 MNRCIHCGKCARIC 157 >gi|253314649|ref|ZP_04837862.1| formate dehydrogenase-like protein [Staphylococcus aureus subsp. aureus str. CF-Marseille] Length = 869 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 13/96 (13%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P+EK Y +CI C C C + R + Sbjct: 16 PYEKDYGP----------FYRYDPNQCILCGRCVEACQDIEVNETIRIDWDREHPRVIWD 65 Query: 97 D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 + I+ C+ CG C CP +A++E A Sbjct: 66 NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGY 101 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 11/36 (30%) Query: 78 ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 Y D +CI CG C EAC Sbjct: 7 HQTYEYKEKPYEKDYGPFYRYDPNQCILCGRCVEAC 42 >gi|229491834|ref|ZP_04385655.1| ferredoxin--NADP+ reductase [Rhodococcus erythropolis SK121] gi|229321515|gb|EEN87315.1| ferredoxin--NADP+ reductase [Rhodococcus erythropolis SK121] Length = 575 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 35/104 (33%), Gaps = 12/104 (11%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C + C CP I ID C+ CG C ACP Sbjct: 1 MPHVVTQSCCSDASCVYACPVNCIHPTPDEPD---FLTAEMLHIDPQACVDCGACVSACP 57 Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158 VDAIV P + R + L N D ++ E R ++ Sbjct: 58 VDAIV--PESKLTDPQR---VF----LSINADFYKEERPRPLLA 92 >gi|226309118|ref|YP_002769078.1| ferredoxin--NADP(+) reductase [Rhodococcus erythropolis PR4] gi|226188235|dbj|BAH36339.1| putative ferredoxin--NADP(+) reductase [Rhodococcus erythropolis PR4] Length = 575 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 35/104 (33%), Gaps = 12/104 (11%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C + C CP I ID C+ CG C ACP Sbjct: 1 MPHVVTQSCCSDASCVYACPVNCIHPTPDEPD---FLTAEMLHIDPQACVDCGACVSACP 57 Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158 VDAIV P + R + L N D ++ E R ++ Sbjct: 58 VDAIV--PESKLTDPQR---VF----LSINADFYKEERPRPLLA 92 >gi|229543514|ref|ZP_04432574.1| formate dehydrogenase, alpha subunit [Bacillus coagulans 36D1] gi|229327934|gb|EEN93609.1| formate dehydrogenase, alpha subunit [Bacillus coagulans 36D1] Length = 980 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YPF + +++ Y +CIAC C C + R Sbjct: 123 HQKYPF--TPKTDASGVDYSNPFYRYDPNQCIACGRCVEACQNLQVNETLSIDWEAERPR 180 Query: 93 TVRYD---IDMIKCIYCGLCQEACPVDAIVE 120 + + I+ C+ CG C CP +A++E Sbjct: 181 VIWDNGVPINESSCVSCGHCVTVCPCNALME 211 Score = 37.4 bits (85), Expect = 0.59, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 21/81 (25%), Gaps = 11/81 (13%) Query: 44 SPRFRGEHALRRYPNGEERCIAC----KLC-------EAICPAQAITIESGPRCHDGTRR 92 S R E R N C C C + Q Sbjct: 81 SEAARHEAMDRILANHLLYCTVCDNNNGNCIVHNTTEKMGIEHQKYPFTPKTDASGVDYS 140 Query: 93 TVRYDIDMIKCIYCGLCQEAC 113 Y D +CI CG C EAC Sbjct: 141 NPFYRYDPNQCIACGRCVEAC 161 >gi|307304400|ref|ZP_07584151.1| NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding [Sinorhizobium meliloti BL225C] gi|306902602|gb|EFN33196.1| NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding [Sinorhizobium meliloti BL225C] Length = 853 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 3/80 (3%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 + S R + N RCI C+ C +C + G ++ Sbjct: 128 RVFHSKDIRLSPVIIMNVN---RCIQCQRCVRMCEEVVGAVALGTVEKGMDTAVTGFEGS 184 Query: 100 MIKCIYCGLCQEACPVDAIV 119 + C CG C E CPV A++ Sbjct: 185 LASCDQCGNCVEVCPVGALM 204 >gi|257875824|ref|ZP_05655477.1| respiratory-chain NADH dehydrogenase 51 kDa subunit [Enterococcus casseliflavus EC20] gi|257809990|gb|EEV38810.1| respiratory-chain NADH dehydrogenase 51 kDa subunit [Enterococcus casseliflavus EC20] Length = 445 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 35/109 (32%), Gaps = 10/109 (9%) Query: 13 LKEFVGA-------FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 L +F G L K+ T+ P KG S + + E CI Sbjct: 313 LIDFAGGFQGAPSKLILGGPMMGKSVKTLKVPVTKG--SNGIVVFNEETDWLYAENPCIR 370 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 C C CP + +E G ++ CI CG C CP Sbjct: 371 CNKCVEACPMLLMPMEIDQFYRAGD-YQKCEELLAEACINCGACTFVCP 418 Score = 35.5 bits (80), Expect = 2.3, Method: Composition-based stats. Identities = 14/41 (34%), Positives = 16/41 (39%), Gaps = 4/41 (9%) Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLN 143 CI C C EACP+ + E R Y E LL Sbjct: 368 CIRCNKCVEACPMLLMPM----EIDQFYRAGDYQKCEELLA 404 >gi|254461883|ref|ZP_05075299.1| dihydroorotate dehydrogenase family protein [Rhodobacterales bacterium HTCC2083] gi|206678472|gb|EDZ42959.1| dihydroorotate dehydrogenase family protein [Rhodobacteraceae bacterium HTCC2083] Length = 434 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 35/95 (36%), Gaps = 8/95 (8%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI+C C A C E + + +C+ Sbjct: 330 QYLNLNYIAKAKIDQDLCISCGRCFAAC-------EDTSHQAIAMSEDRVFSVIDAECVA 382 Query: 106 CGLCQEACPVD-AIVEGPNFEFATETRQELYYDKE 139 C LC CPV+ I A + R + +K+ Sbjct: 383 CNLCVNVCPVETCITMEKMPVGAVDPRTDRVVEKD 417 >gi|188533914|ref|YP_001907711.1| Electron transport complex protein [Erwinia tasmaniensis Et1/99] gi|226735445|sp|B2VEQ3|RNFC_ERWT9 RecName: Full=Electron transport complex protein rnfC gi|188028956|emb|CAO96822.1| Electron transport complex protein [Erwinia tasmaniensis Et1/99] Length = 804 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 47/133 (35%), Gaps = 8/133 (6%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 T++ P K + + E+ CI C C CPA A+ + G Sbjct: 348 TLDVPVVKITNCILAPAASEM-GQNEAEQGCIRCSACADACPA-ALLPQQLYWYSRGGDH 405 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF--EFATETRQELYYDKERLLNNGDRWES 150 ++ CI CG C CP I + E A +L ++ L N R+E+ Sbjct: 406 DKARAHNIADCIECGACAYVCP-SNIPLVQYYRQEKAEIQAIDLEAERAALAKN--RFEA 462 Query: 151 EIVRNIVTDSPYR 163 + + + R Sbjct: 463 R-QQRLEREKAAR 474 >gi|16263281|ref|NP_436074.1| NuoG2 NADH I chain G 2 [Sinorhizobium meliloti 1021] gi|17380454|sp|P56914|NUOG2_RHIME RecName: Full=NADH-quinone oxidoreductase subunit G 2; AltName: Full=NADH dehydrogenase I subunit G 2; AltName: Full=NDH-1 subunit G 2 gi|14523958|gb|AAK65486.1| NuoG2 NADH:quinone oxidoreductase subunit 7 (chain G2) [Sinorhizobium meliloti 1021] Length = 853 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 3/80 (3%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 + S R + N RCI C+ C +C + G ++ Sbjct: 128 RVFHSKDIRLSPVIIMNVN---RCIQCQRCVRMCEEVVGAVALGTVEKGMDTAVTGFEGS 184 Query: 100 MIKCIYCGLCQEACPVDAIV 119 + C CG C E CPV A++ Sbjct: 185 LASCDQCGNCVEVCPVGALM 204 >gi|312602354|ref|YP_004022199.1| dihydropyrimidine dehydrogenase [NADP+] subunit beta [Burkholderia rhizoxinica HKI 454] gi|312169668|emb|CBW76680.1| Dihydropyrimidine dehydrogenase [NADP+] beta subunit (EC 1.3.1.2) [Burkholderia rhizoxinica HKI 454] Length = 425 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 27/76 (35%), Gaps = 6/76 (7%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + +CI C LC C A +G R +++ C+ Sbjct: 328 KYLNLQYDIKARIDQSKCIQCGLCHIACEDTAHQAITGYRDGR-----RHFEVIDANCVG 382 Query: 106 CGLCQEACPV-DAIVE 120 C LC CPV I Sbjct: 383 CNLCMHVCPVDQCITM 398 >gi|307265544|ref|ZP_07547099.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter wiegelii Rt8.B1] gi|306919498|gb|EFN49717.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacter wiegelii Rt8.B1] Length = 1175 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 32/143 (22%), Positives = 51/143 (35%), Gaps = 31/143 (21%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTRRTV 94 G+ + RG + CI C C +CP AI T E +G + Sbjct: 667 PGTAAYEKRGIAVDVPEWQ-IDNCIQCNQCAFVCPHAAIRPFLLTEEEVKNAPEGFKVKK 725 Query: 95 -----------RYDIDMIKCIYCGLCQEACP--VDAIVEGP---------NFEFATE-TR 131 R + ++ C CG+C CP A+V P N+E+A + Sbjct: 726 AIGKGFEGLYYRIQVSVLDCTGCGVCVNECPAKEKALVMKPLETQMEEAKNWEYAMTLSP 785 Query: 132 QELYYDKERLLNNGDRWESEIVR 154 +E KE G ++E ++ Sbjct: 786 KENPMSKE--TVKGSQFEKPLLE 806 >gi|258515175|ref|YP_003191397.1| Electron transfer flavoprotein alpha/beta- subunit [Desulfotomaculum acetoxidans DSM 771] gi|257778880|gb|ACV62774.1| Electron transfer flavoprotein alpha/beta- subunit [Desulfotomaculum acetoxidans DSM 771] Length = 441 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 10/63 (15%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 N CI C+ C + CP A+ I+ + CI CG C CPV A Sbjct: 4 NVSNTCIGCQACISACPHGALYIDDNG----------LCKVIAKNCIECGGCIGVCPVGA 53 Query: 118 IVE 120 I Sbjct: 54 ISL 56 Score = 34.7 bits (78), Expect = 4.5, Method: Composition-based stats. Identities = 9/21 (42%), Positives = 10/21 (47%) Query: 103 CIYCGLCQEACPVDAIVEGPN 123 CI C C ACP A+ N Sbjct: 9 CIGCQACISACPHGALYIDDN 29 >gi|257462646|ref|ZP_05627056.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. D12] gi|317060293|ref|ZP_07924778.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. D12] gi|313685969|gb|EFS22804.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. D12] Length = 1190 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 35/106 (33%), Gaps = 19/106 (17%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI----ESGPRCHDGTRRT 93 FE G+ S RG + CI C C +CP AI E + T Sbjct: 677 FENGTASFEKRGVAVEVPEWI-ADNCIQCNQCSYVCPHAAIRPFLITEEEKKASPVEFVT 735 Query: 94 V------------RYDIDMIKCIYCGLCQEACPVD--AIVEGPNFE 125 R + + C+ CG C CP A++ P E Sbjct: 736 KKAVGKGLEDVSYRIQVTPLDCVGCGSCVNVCPAPGKALIMKPIAE 781 >gi|226940149|ref|YP_002795222.1| electron transport complex protein RnfC [Laribacter hongkongensis HLHK9] gi|226715075|gb|ACO74213.1| electron transport complex protein RnfC [Laribacter hongkongensis HLHK9] Length = 620 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 33/102 (32%), Gaps = 11/102 (10%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 CI C C CP ++ + + + CI CG C CP I Sbjct: 362 PCIRCGECAKACPTDLQPMDLY-WFAKSRQTGRAQEHHLFDCIECGACSYVCPSQ-IPLV 419 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + FA + ER D+ +EI R +R Sbjct: 420 DYYRFAKSD----IWAAER-----DKKAAEIARTRHEFREFR 452 >gi|171058834|ref|YP_001791183.1| putative glutamate synthase (NADPH) small subunit [Leptothrix cholodnii SP-6] gi|170776279|gb|ACB34418.1| Glutamate synthase (NADH) [Leptothrix cholodnii SP-6] Length = 571 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 9/59 (15%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C +CP A+ R R++I++ C CG+C CP AI Sbjct: 517 NCFECDNCYGVCPDNAVIKLGPGR---------RFEINLDYCKGCGMCAAECPCGAIEM 566 >gi|304314560|ref|YP_003849707.1| energy-converting hydrogenase A, subunit P [Methanothermobacter marburgensis str. Marburg] gi|5734542|emb|CAB52771.1| polyferredoxin [Methanothermobacter thermautotrophicus] gi|302588019|gb|ADL58394.1| energy-converting hydrogenase A, subunit P [Methanothermobacter marburgensis str. Marburg] Length = 340 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 42/140 (30%), Gaps = 18/140 (12%) Query: 10 FLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69 +L EF + + + + E RFR + +E CI C C Sbjct: 5 IWYLYEFAR------KSWAEKFANAHTEHEILEKPERFRDFPTVH-----KEYCIGCGAC 53 Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA--IVEGPNFEFA 127 CPA I CI CG C E CP D I G N Sbjct: 54 TTACPAPGAIKLVRDTDTSEEEGLTYPVIVRGACIRCGFCAEVCPTDPKTIECGENHLI- 112 Query: 128 TETRQEL-YYDKERLLNNGD 146 R+E E+L D Sbjct: 113 ---REEFTIVPSEKLYVIDD 129 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 28/75 (37%), Positives = 31/75 (41%), Gaps = 5/75 (6%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR-----YDIDMIKCIYCG 107 L CI C C +CP TIE G T+ Y ID CI C Sbjct: 77 LTYPVIVRGACIRCGFCAEVCPTDPKTIECGENHLIREEFTIVPSEKLYVIDDYLCIRCR 136 Query: 108 LCQEACPVDAIVEGP 122 C +ACPVDAIVE Sbjct: 137 KCMKACPVDAIVEED 151 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 27/60 (45%), Gaps = 11/60 (18%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 Y + CI C+ C CP AI E G R +ID +CI CG C E CPV Sbjct: 125 YVIDDYLCIRCRKCMKACPVDAIVEEDG-----------RVEIDQSRCIACGDCLEKCPV 173 >gi|15895497|ref|NP_348846.1| pyruvate:ferredoxin oxidoreductase [Clostridium acetobutylicum ATCC 824] gi|15025228|gb|AAK80186.1|AE007723_4 Pyruvate:ferredoxin oxidoreductase [Clostridium acetobutylicum ATCC 824] gi|325509644|gb|ADZ21280.1| Pyruvate:ferredoxin oxidoreductase [Clostridium acetobutylicum EA 2018] Length = 1171 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 30/91 (32%), Gaps = 19/91 (20%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQA-----ITIESGPRCHDGTRRTVRY--------- 96 A+ ++CI C C +CP +T E +G + Sbjct: 677 IAINVPEWNVDKCIQCNQCSFVCPHAVIRPALMTAEEAKNAPEGMQYKKAMGVKSDEELN 736 Query: 97 ---DIDMIKCIYCGLCQEACP--VDAIVEGP 122 I + C CG C E CP A+V P Sbjct: 737 FSIVISPLDCTGCGNCAEVCPAKEKALVMKP 767 >gi|118581920|ref|YP_903170.1| formate dehydrogenase subunit alpha [Pelobacter propionicus DSM 2379] gi|118504630|gb|ABL01113.1| NAD-dependent formate dehydrogenase catalytic subunit [Pelobacter propionicus DSM 2379] Length = 904 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 3/68 (4%) Query: 55 RYPNGEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQE 111 Y +C+ C+ C C A Q G R +D I C+ CG C Sbjct: 142 FYSRNMNKCVKCRRCVTTCSAYQCSEAIDFAGRGFGVRVAAPFDDQIRNSSCVSCGNCVS 201 Query: 112 ACPVDAIV 119 CPV A+ Sbjct: 202 VCPVGALQ 209 >gi|302391251|ref|YP_003827071.1| dihydroorotate dehydrogenase family protein [Acetohalobium arabaticum DSM 5501] gi|302203328|gb|ADL12006.1| dihydroorotate dehydrogenase family protein [Acetohalobium arabaticum DSM 5501] Length = 409 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 13/77 (16%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 E CI C +C C AI++ + +D KC +CGLC CP +A+ Sbjct: 341 PEECIGCGMCLNWCFYDAISLYEEDGE-------TKAKVDPDKCDHCGLCVSLCPKEALN 393 Query: 120 EGPNFEFATETRQELYY 136 +E + E Y Sbjct: 394 M--EYE----DKDEKVY 404 >gi|222099656|ref|YP_002534224.1| Pyruvate synthase subunit porD [Thermotoga neapolitana DSM 4359] gi|221572046|gb|ACM22858.1| Pyruvate synthase subunit porD [Thermotoga neapolitana DSM 4359] Length = 99 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 34/92 (36%), Gaps = 10/92 (10%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 + G+ G + R +E+CI C C CP QAI E G Sbjct: 16 DKPGTAREYKTGTWRVMRPILHKEKCIDCMFCWLYCPDQAIVQEGGIMKGF--------- 66 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 + C CGLC CP AI P EF E Sbjct: 67 -NYDYCKGCGLCANVCPKQAIEMRPETEFLGE 97 >gi|210620710|ref|ZP_03292196.1| hypothetical protein CLOHIR_00139 [Clostridium hiranonis DSM 13275] gi|210155211|gb|EEA86217.1| hypothetical protein CLOHIR_00139 [Clostridium hiranonis DSM 13275] Length = 501 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 7/69 (10%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIKCIYCGLC 109 +++C +C C+ C AI+ P + T + I KC+ CG C Sbjct: 138 YIDQDKCKSCGACKKACQYDAISEMIRPCKSVCPTGALDINKDTSKAIIHEEKCVNCGAC 197 Query: 110 QEACPVDAI 118 ACP AI Sbjct: 198 MSACPFGAI 206 Score = 33.9 bits (76), Expect = 7.5, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 13/69 (18%) Query: 54 RRYPNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + C C C+ C AI+ +G R ID KC CG C++ Sbjct: 104 INDFTVTDLCRGCLAHRCKESCKFGAISYING-----------RAYIDQDKCKSCGACKK 152 Query: 112 ACPVDAIVE 120 AC DAI E Sbjct: 153 ACQYDAISE 161 >gi|297619218|ref|YP_003707323.1| Cobyrinic acid ac-diamide synthase [Methanococcus voltae A3] gi|297378195|gb|ADI36350.1| Cobyrinic acid ac-diamide synthase [Methanococcus voltae A3] Length = 318 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 10/76 (13%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 + + ++ ++ C CKLC C AI ++ ID + C CG Sbjct: 56 KEYYGVKCAVLNQDLCTNCKLCYEKCRFDAILLDKDENVV----------IDDLSCEGCG 105 Query: 108 LCQEACPVDAIVEGPN 123 LC+ CPVDAI Sbjct: 106 LCEYICPVDAITMEDE 121 >gi|221195140|ref|ZP_03568196.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Atopobium rimae ATCC 49626] gi|221185043|gb|EEE17434.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Atopobium rimae ATCC 49626] Length = 1186 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 26/145 (17%), Positives = 48/145 (33%), Gaps = 33/145 (22%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI--------------ESG 83 FE G+ + RG + + +CI C C +CP AI Sbjct: 673 FELGAAAYEKRGIAVMVPRWDD-TKCIQCNQCAYVCPHAAIRPFVLTDEEVAAAPAAAVF 731 Query: 84 PRCHDGTRRTVRYDI--DMIKCIYCGLCQEACPVDAIVE---------GPNFEFATETRQ 132 + ++++I C C C CP DA+ F+++ Sbjct: 732 KDAVGPKAKGLKFEIAVSQFDCTGCSNCVYICPADALTMVAAEEEQPKQEIFDYSV---- 787 Query: 133 ELYYDKERLLNN---GDRWESEIVR 154 +K L+ N G +++ ++ Sbjct: 788 AHVAEKPELVANNVKGSQFKKPLLE 812 >gi|212702371|ref|ZP_03310499.1| hypothetical protein DESPIG_00384 [Desulfovibrio piger ATCC 29098] gi|212674249|gb|EEB34732.1| hypothetical protein DESPIG_00384 [Desulfovibrio piger ATCC 29098] Length = 289 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 28/89 (31%), Gaps = 17/89 (19%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P K T +R+ CI C C +C +A+ G Sbjct: 46 QPEVKERTPFISGHSARIRQDD-----CIRCGQCADLCRFEAVRPHDGG----------- 89 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 + C CG+C + CP AI N Sbjct: 90 -FLIDDHCEGCGVCVKLCPQQAIDFPDNH 117 >gi|157374206|ref|YP_001472806.1| putative glutamate synthase (NADPH) [Shewanella sediminis HAW-EB3] gi|157316580|gb|ABV35678.1| putative glutamate synthase (NADPH) [Shewanella sediminis HAW-EB3] Length = 597 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 34/111 (30%), Gaps = 26/111 (23%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------ITIESGPRCHDGTR 91 EK + R + E+ CI C CE +CP ++ R Sbjct: 476 DEKLALDEAHRCFNCDVHTIFSEDICIECSACEDVCPVDCINFIPAHAEDTEVRDPIVVN 535 Query: 92 RTVRYDIDMIK--------------------CIYCGLCQEACPVDAIVEGP 122 R DI+ + C++CGLC E CP A Sbjct: 536 RLRVSDINPEQELFVSAPLKTGHLMIKDEDVCLHCGLCAERCPTGAWDMKK 586 Score = 39.3 bits (90), Expect = 0.20, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 20/54 (37%) Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 H V CI C C++ CPVD I P TE R + ++ Sbjct: 483 EAHRCFNCDVHTIFSEDICIECSACEDVCPVDCINFIPAHAEDTEVRDPIVVNR 536 >gi|147920357|ref|YP_685870.1| 2(4Fe-4S) ferredoxin-domain-containing protein [uncultured methanogenic archaeon RC-I] gi|110621266|emb|CAJ36544.1| 2(4Fe-4S) ferredoxin-domain protein [uncultured methanogenic archaeon RC-I] Length = 130 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + +C+ C C ++CP AI+ E + ID C+ CG C ACP AI Sbjct: 75 DDNQCVHCGACVSVCPVDAISYEHDWQV----------TIDKAACVQCGTCTHACPTSAI 124 Query: 119 VEGP 122 Sbjct: 125 RLTD 128 Score = 37.0 bits (84), Expect = 0.80, Method: Composition-based stats. Identities = 10/24 (41%), Positives = 15/24 (62%) Query: 101 IKCIYCGLCQEACPVDAIVEGPNF 124 +C++CG C CPVDAI ++ Sbjct: 77 NQCVHCGACVSVCPVDAISYEHDW 100 >gi|150016338|ref|YP_001308592.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149902803|gb|ABR33636.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Clostridium beijerinckii NCIMB 8052] Length = 1172 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 22/115 (19%), Positives = 35/115 (30%), Gaps = 30/115 (26%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT----------------RRTV 94 A+ ++CI C C ICP + Sbjct: 677 IAVNVPEWQTDKCIQCGQCAFICPHATVRQFLVDESEMKNAPEDFITKKAAGKGLENYGY 736 Query: 95 RYDIDMIKCIYCGLCQEACPVD--AIVEGP----------NFEFAT--ETRQELY 135 R I + C CG C + CP A++ P N+E+A +++L Sbjct: 737 RIQIAPLDCTGCGNCADVCPAPGKALIMKPAEEQILEQAENWEYAMKLTPKEDLI 791 >gi|332830208|gb|EGK02836.1| hypothetical protein HMPREF9455_01086 [Dysgonomonas gadei ATCC BAA-286] Length = 428 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 29/104 (27%), Gaps = 11/104 (10%) Query: 17 VGAFFLCLRY------FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70 + + + T S G R+ CI+C C Sbjct: 306 LFGLSVTNKTVVLGGPMMGRGIT----DWNVPVSKGSSGVLFFRKERIKRSNCISCGYCV 361 Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 +CP + ++ G + + CI C C+ CP Sbjct: 362 DVCPMHLMPMKFEENFRRG-KYFNLEKYSISSCIECAACEYICP 404 Score = 40.5 bits (93), Expect = 0.091, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 4/56 (7%) Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140 + G + I CI CG C + CP+ + F R+ Y++ E+ Sbjct: 336 KGSSGVLFFRKERIKRSNCISCGYCVDVCPMHLMPMKFEENF----RRGKYFNLEK 387 >gi|312602256|ref|YP_004022101.1| ferredoxin--NADP reductase [Burkholderia rhizoxinica HKI 454] gi|312169570|emb|CBW76582.1| Ferredoxin--NADP reductase (EC 1.18.1.2) [Burkholderia rhizoxinica HKI 454] Length = 406 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 11/69 (15%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 L ++ + CI C CE CP AIT ++ Y ++ C C C Sbjct: 1 MAMLNQHLIDPQVCIRCNTCEETCPNDAITHDAN-----------NYVVNAQVCNGCMAC 49 Query: 110 QEACPVDAI 118 CP AI Sbjct: 50 VPPCPTGAI 58 Score = 34.3 bits (77), Expect = 5.5, Method: Composition-based stats. Identities = 12/23 (52%), Positives = 13/23 (56%) Query: 98 IDMIKCIYCGLCQEACPVDAIVE 120 ID CI C C+E CP DAI Sbjct: 9 IDPQVCIRCNTCEETCPNDAITH 31 >gi|312135460|ref|YP_004002798.1| pyruvate/ketoisovalerate oxidoreductase subunit gamma [Caldicellulosiruptor owensensis OL] gi|311775511|gb|ADQ04998.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit [Caldicellulosiruptor owensensis OL] Length = 339 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 39/91 (42%), Gaps = 8/91 (8%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E+CI C LCE CP +G + + +D C C C + CP A+VE Sbjct: 252 EKCINCGLCETTCPD--YVFVWDRIIENGKPKMINMGLDYQYCKGCLRCVDICPAGALVE 309 Query: 121 GPNFEFATET---RQEL-YYDKERLLNNGDR 147 G E+ E + + Y+K +G++ Sbjct: 310 GIEREYDIEKISAKHDFDIYEKW--YEDGEK 338 Score = 35.5 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 10/65 (15%) Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNN 144 + + +R KCI CGLC+ CP V E K +++N Sbjct: 236 KNNMTSRIGKIPVFVKEKCINCGLCETTCPDYVFVWDRIIEN----------GKPKMINM 285 Query: 145 GDRWE 149 G ++ Sbjct: 286 GLDYQ 290 >gi|301052239|ref|YP_003790450.1| formate dehydrogenase subunit alpha [Bacillus anthracis CI] gi|300374408|gb|ADK03312.1| formate dehydrogenase, alpha subunit, anaerobic [Bacillus cereus biovar anthracis str. CI] Length = 978 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + R + Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 I+ C+ CG C CP +A++E Sbjct: 183 WDHGVSINDSSCVSCGQCVTVCPCNALME 211 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|229089652|ref|ZP_04220914.1| formate dehydrogenase [Bacillus cereus Rock3-42] gi|228693682|gb|EEL47383.1| formate dehydrogenase [Bacillus cereus Rock3-42] Length = 978 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + R + Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 I+ C+ CG C CP +A++E Sbjct: 183 WDHGVSINDSSCVSCGQCVTVCPCNALME 211 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|225181697|ref|ZP_03735136.1| protein of unknown function DUF362 [Dethiobacter alkaliphilus AHT 1] gi|225167568|gb|EEG76380.1| protein of unknown function DUF362 [Dethiobacter alkaliphilus AHT 1] Length = 370 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 12/60 (20%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI+CK+C+ CPA AIT+E I+ CI C CQE CP AI Sbjct: 313 DSCISCKICQHACPAGAITMEEAA------------QIEEGACIRCYCCQEMCPEGAIEL 360 Score = 33.9 bits (76), Expect = 7.6, Method: Composition-based stats. Identities = 10/26 (38%), Positives = 13/26 (50%) Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVE 120 + + CI C +CQ ACP AI Sbjct: 307 HPKVKVDSCISCKICQHACPAGAITM 332 >gi|225571993|ref|ZP_03780857.1| hypothetical protein RUMHYD_00287 [Blautia hydrogenotrophica DSM 10507] gi|225040526|gb|EEG50772.1| hypothetical protein RUMHYD_00287 [Blautia hydrogenotrophica DSM 10507] Length = 368 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 11/63 (17%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 ++ CI CK C IC A + I+ KC+ CG C CP D Sbjct: 191 HVNQKLCIGCKKCAQICAHDAPEFKDLKAA-----------INHDKCVGCGRCLGVCPKD 239 Query: 117 AIV 119 AI Sbjct: 240 AIC 242 >gi|119476465|ref|ZP_01616816.1| electron transport complex protein RnfC [marine gamma proteobacterium HTCC2143] gi|119450329|gb|EAW31564.1| electron transport complex protein RnfC [marine gamma proteobacterium HTCC2143] Length = 684 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 40/100 (40%), Gaps = 2/100 (2%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C +C +CPA + + G D +++ CI CG C ACP I Sbjct: 368 QACIRCGMCAEVCPAS-LLPQQLYWFSRGKEYEKLEDHNLMDCIECGACSYACP-SNIPL 425 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDS 160 + + +E D + + R+E+ R ++ Sbjct: 426 VQYYRASKADIREQKQDAIKAEQSKMRFEARQERLDRQEA 465 >gi|229154293|ref|ZP_04282413.1| formate dehydrogenase [Bacillus cereus ATCC 4342] gi|228629117|gb|EEK85824.1| formate dehydrogenase [Bacillus cereus ATCC 4342] Length = 978 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + R + Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 I+ C+ CG C CP +A++E Sbjct: 183 WDHGVSINDSSCVSCGQCVTVCPCNALME 211 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|217077037|ref|YP_002334753.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Thermosipho africanus TCF52B] gi|217036890|gb|ACJ75412.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Thermosipho africanus TCF52B] Length = 642 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 26/78 (33%), Gaps = 9/78 (11%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 + + L Y ++C CK C AI ++ + ID C CG Sbjct: 574 KNKEKLPLYKVNTDKCTGCKTCIVTFGCPAIFWDAE---------NKKAKIDPTMCWGCG 624 Query: 108 LCQEACPVDAIVEGPNFE 125 C + CP A E Sbjct: 625 SCAQVCPFGAFELVKEAE 642 >gi|212705024|ref|ZP_03313152.1| hypothetical protein DESPIG_03092 [Desulfovibrio piger ATCC 29098] gi|212671576|gb|EEB32059.1| hypothetical protein DESPIG_03092 [Desulfovibrio piger ATCC 29098] Length = 480 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 6/71 (8%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY------DIDMIKCIYCGLCQEA 112 E+C C +C CP AI + P R + +ID KC CG C A Sbjct: 149 DPEKCRNCGMCMDACPYHAIVRLNVPCEAACPVRAIHKGNKGRAEIDFEKCTSCGRCMRA 208 Query: 113 CPVDAIVEGPN 123 CP A++E Sbjct: 209 CPFGAVMERSE 219 Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 22/76 (28%), Gaps = 5/76 (6%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-----DIDMIK 102 R E + C C + + + ID K Sbjct: 93 RKEPNWPILTVCDIACQGCMRARYYVTDACQGCVARSCIGSCRFGAISFSRGRSTIDPEK 152 Query: 103 CIYCGLCQEACPVDAI 118 C CG+C +ACP AI Sbjct: 153 CRNCGMCMDACPYHAI 168 >gi|153952568|ref|YP_001398777.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Campylobacter jejuni subsp. doylei 269.97] gi|152940014|gb|ABS44755.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Campylobacter jejuni subsp. doylei 269.97] Length = 1186 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 21/124 (16%), Positives = 36/124 (29%), Gaps = 24/124 (19%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA------------------QAIT 79 FE G+T RG + CI C C ++CP Sbjct: 668 FEHGTTEYEKRGVGVMVPRWIE-ANCIQCNQCASVCPHAVIRPFLINDEEMVNAPRGVKD 726 Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-----AIVEGPNFEFATETRQEL 134 + G + + + + + C C LC CP + +F + + Sbjct: 727 HALEAKGTKGEKLSFKIQVSPLDCTGCELCVHECPTKEKSLVMVPLQEEMDFGEQENADY 786 Query: 135 YYDK 138 + K Sbjct: 787 LFKK 790 >gi|49480180|ref|YP_034847.1| formate dehydrogenase subunit alpha, anaerobic [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49331736|gb|AAT62382.1| formate dehydrogenase, alpha subunit, anaerobic [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 978 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + R + Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 I+ C+ CG C CP +A++E Sbjct: 183 WDHGVSINDSSCVSCGQCVTVCPCNALME 211 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|18313957|ref|NP_560624.1| 2-ketoacid ferredoxin oxidoreductase delta subunit [Pyrobaculum aerophilum str. IM2] gi|18161530|gb|AAL64806.1| 2-ketoacid ferredoxin oxidoreductase delta subunit [Pyrobaculum aerophilum str. IM2] Length = 83 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 29/84 (34%), Gaps = 10/84 (11%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 S G + +CI C LC CP I E G + ID Sbjct: 7 PAPASAGITGTWRTYKPVVNLSKCIDCGLCWLYCPESVIDWEKG----------TKVRID 56 Query: 100 MIKCIYCGLCQEACPVDAIVEGPN 123 C CG+C + CPV AI P Sbjct: 57 YDFCKGCGICADVCPVKAIDMVPE 80 >gi|119356407|ref|YP_911051.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [Chlorobium phaeobacteroides DSM 266] gi|119353756|gb|ABL64627.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Chlorobium phaeobacteroides DSM 266] Length = 1186 Score = 50.1 bits (118), Expect = 9e-05, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 26/98 (26%), Gaps = 24/98 (24%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA--------------- 77 T FEK + + G + CI C C +CP A Sbjct: 672 TGTSKFEKRNLADNIPGW--------EPDLCIQCGKCCMVCPHAAIRAKVYDPKYLKNAP 723 Query: 78 -ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + + + I C C +C CP Sbjct: 724 NTFKNTDAKAANWEGMKYTIQIAPEDCTGCEMCAHVCP 761 Score = 34.7 bits (78), Expect = 4.6, Method: Composition-based stats. Identities = 9/19 (47%), Positives = 9/19 (47%) Query: 100 MIKCIYCGLCQEACPVDAI 118 CI CG C CP AI Sbjct: 691 PDLCIQCGKCCMVCPHAAI 709 >gi|307318107|ref|ZP_07597543.1| NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding [Sinorhizobium meliloti AK83] gi|306896148|gb|EFN26898.1| NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding [Sinorhizobium meliloti AK83] Length = 853 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 3/80 (3%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 + S R + N RCI C+ C +C + G ++ Sbjct: 128 RVFHSKDIRLSPVIIMNVN---RCIQCQRCVRMCEEVVGAVALGTVEKGMDTAVTGFEGS 184 Query: 100 MIKCIYCGLCQEACPVDAIV 119 + C CG C E CPV A++ Sbjct: 185 LASCDQCGNCVEVCPVGALM 204 >gi|304412801|ref|ZP_07394403.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Shewanella baltica OS183] gi|307307465|ref|ZP_07587200.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Shewanella baltica BA175] gi|304348881|gb|EFM13297.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Shewanella baltica OS183] gi|306910253|gb|EFN40686.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Shewanella baltica BA175] Length = 553 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 30/82 (36%), Gaps = 9/82 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+C C C AICP A+ C+ CGLC+ ACP I Sbjct: 419 NVEKCTMCMSCVAICPTVALQDGGDKPALH---------FIEQNCVQCGLCEAACPEKVI 469 Query: 119 VEGPNFEFATETRQELYYDKER 140 P F RQ+ + KE Sbjct: 470 SLTPQINFDKAARQQQHTLKEE 491 Score = 38.9 bits (89), Expect = 0.23, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 11/53 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C CPA AI+ + +ID C G C ACP AI Sbjct: 195 CNRCLNFCPADAISSVAKK-----------IEIDPYLCHGAGSCTSACPTGAI 236 >gi|297190829|ref|ZP_06908227.1| NADH-quinone oxidoreductase subunit G 2 [Streptomyces pristinaespiralis ATCC 25486] gi|297150632|gb|EFH30699.1| NADH-quinone oxidoreductase subunit G 2 [Streptomyces pristinaespiralis ATCC 25486] Length = 285 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 4/75 (5%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM----IKCIYCGLCQE 111 Y ++CI C C C Q + G + + D C+YCG C E Sbjct: 145 YVRDYDKCILCYKCVDACGDQWQNTFAIAVAGRGFDARISTEHDAPLTDSACVYCGNCIE 204 Query: 112 ACPVDAIVEGPNFEF 126 CP A+ F+ Sbjct: 205 VCPTGALSFKSEFDM 219 >gi|282857806|ref|ZP_06267014.1| iron hydrogenase 1 ([Fe] hydrogenase) (Fe-only hydrogenase) (CpI) [Pyramidobacter piscolens W5455] gi|282584367|gb|EFB89727.1| iron hydrogenase 1 ([Fe] hydrogenase) (Fe-only hydrogenase) (CpI) [Pyramidobacter piscolens W5455] Length = 577 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 30/89 (33%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 + PFEK S R + L R + +C+ C + Sbjct: 120 DTPFEKHYVSRRTSPDFPLIRDFSLCIKCMRCVQVCDKIQHANVWDVVNTGAKTTVDVAR 179 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 Y ++ C CG C CPV A+ E + Sbjct: 180 VYRLEDADCALCGQCITHCPVGALHERDD 208 >gi|228983790|ref|ZP_04143987.1| formate dehydrogenase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228775985|gb|EEM24354.1| formate dehydrogenase [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 978 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + R + Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 I+ C+ CG C CP +A++E Sbjct: 183 WDHGVSINDSSCVSCGQCVTVCPCNALME 211 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|225862561|ref|YP_002747939.1| molybdopterin oxidoreductase family protein [Bacillus cereus 03BB102] gi|229182920|ref|ZP_04310153.1| formate dehydrogenase [Bacillus cereus BGSC 6E1] gi|225788100|gb|ACO28317.1| molybdopterin oxidoreductase family protein [Bacillus cereus 03BB102] gi|228600544|gb|EEK58131.1| formate dehydrogenase [Bacillus cereus BGSC 6E1] Length = 978 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + R + Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 I+ C+ CG C CP +A++E Sbjct: 183 WDHGVSINDSSCVSCGQCVTVCPCNALME 211 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|217958175|ref|YP_002336719.1| molybdopterin oxidoreductase family protein [Bacillus cereus AH187] gi|217066922|gb|ACJ81172.1| molybdopterin oxidoreductase family protein [Bacillus cereus AH187] Length = 978 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + R + Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 I+ C+ CG C CP +A++E Sbjct: 183 WDHGVSINDSSCVSCGQCVTVCPCNALME 211 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|254361778|ref|ZP_04977913.1| NADH dehydrogenase (ubiquinone) [Mannheimia haemolytica PHL213] gi|153093313|gb|EDN74309.1| NADH dehydrogenase (ubiquinone) [Mannheimia haemolytica PHL213] Length = 205 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 25/81 (30%), Gaps = 10/81 (12%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 E ++ E+ CI C C CP AI + + I Sbjct: 96 PPMEGMAEPEMKVAFVIEDLCIGCTKCIQACPVDAIIGTNK----------AMHTIIPDL 145 Query: 103 CIYCGLCQEACPVDAIVEGPN 123 C C LC CP + I P Sbjct: 146 CTGCELCVAPCPTNCIEMRPI 166 >gi|118578917|ref|YP_900167.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Pelobacter propionicus DSM 2379] gi|118501627|gb|ABK98109.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pelobacter propionicus DSM 2379] Length = 435 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 40/106 (37%), Gaps = 12/106 (11%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 E+C C LC CP AI + + ++ ID C+ CG+C CP A Sbjct: 289 REKCSGCGLCAQACPINAIAMVAADTRSPKRKQDAV--IDTAICLGCGVCALKCPSGACR 346 Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRW--ESEIVRNIVTDSPYR 163 +R++ E E ++N++ D+P R Sbjct: 347 LT--------SREQRVITPESTFERVMLHSLEKGTLQNLLFDNPAR 384 Score = 38.5 bits (88), Expect = 0.30, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 21/40 (52%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 I KC CGLC +ACP++AI + + +Q+ D Sbjct: 287 ITREKCSGCGLCAQACPINAIAMVAADTRSPKRKQDAVID 326 >gi|47567169|ref|ZP_00237885.1| NAD-dependent formate dehydrogenase, alpha subunit [Bacillus cereus G9241] gi|47556225|gb|EAL14560.1| NAD-dependent formate dehydrogenase, alpha subunit [Bacillus cereus G9241] Length = 978 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + R + Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 I+ C+ CG C CP +A++E Sbjct: 183 WDHGVSINDSSCVSCGQCVTVCPCNALME 211 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|328953055|ref|YP_004370389.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] gi|328453379|gb|AEB09208.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] Length = 617 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 34/96 (35%), Gaps = 15/96 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 L+Y F+ + T + +K L Y C +C C CP AI+ Sbjct: 534 TLKY-FREEYTKHIVDKKCPALVC----RQLLTYTIDPNECTSCLACVRECPVGAISGPK 588 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 I+ CI CGLC + C DA+ Sbjct: 589 KEPQV----------INQDLCIKCGLCHDVCQFDAV 614 >gi|260893719|ref|YP_003239816.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ammonifex degensii KC4] gi|260865860|gb|ACX52966.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ammonifex degensii KC4] Length = 1016 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 9/63 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +C C++C +CP AI+ + I+ C CG+C ACP AI Sbjct: 947 DPAKCSGCRICVNLCPYNAISFDD---------VNKVSVINEAVCKGCGVCAAACPSKAI 997 Query: 119 VEG 121 G Sbjct: 998 TMG 1000 Score = 35.5 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 27/88 (30%), Gaps = 22/88 (25%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCH-------DGTRRTVRYDIDMIKCIY---- 105 E+C+AC C A CP + + Y ID KC+ Sbjct: 102 YVDPEKCVACGDCAAKCPVKVKDEFNEGLGERKAIFIKYSQAVPAAYMIDATKCLRILHA 161 Query: 106 -----------CGLCQEACPVDAIVEGP 122 CGLC +AC AI Sbjct: 162 EKAKAAGKEPPCGLCAKACQRGAINFDD 189 >gi|228913279|ref|ZP_04076913.1| formate dehydrogenase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228846330|gb|EEM91348.1| formate dehydrogenase [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 978 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + R + Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 I+ C+ CG C CP +A++E Sbjct: 183 WDHGVSINDSSCVSCGQCVTVCPCNALME 211 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|228944343|ref|ZP_04106716.1| formate dehydrogenase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228815245|gb|EEM61493.1| formate dehydrogenase [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 978 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + R + Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 I+ C+ CG C CP +A++E Sbjct: 183 WDHGVSINDSSCVSCGQCVTVCPCNALME 211 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|296127647|ref|YP_003634899.1| Ferredoxin hydrogenase [Brachyspira murdochii DSM 12563] gi|296019463|gb|ADG72700.1| Ferredoxin hydrogenase [Brachyspira murdochii DSM 12563] Length = 490 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 6/69 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGT------RRTVRYDIDMIKCIYCGLCQ 110 +CI C LC CP AI P + ID KCI+CG C Sbjct: 144 HIDSSKCINCGLCLKNCPYHAIIYIPVPCEESCPVGAINKNEQGKEVIDYHKCIFCGNCM 203 Query: 111 EACPVDAIV 119 CP A++ Sbjct: 204 RECPFSAMM 212 Score = 40.1 bits (92), Expect = 0.099, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 29/81 (35%), Gaps = 6/81 (7%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR------TVRYDIDMI 101 R + +E C AC + + P + + R ID Sbjct: 89 REKPTWPMLTVLDEACNACVRANFMVTNACQACLARPCLVNCPKDAITILDEKRAHIDSS 148 Query: 102 KCIYCGLCQEACPVDAIVEGP 122 KCI CGLC + CP AI+ P Sbjct: 149 KCINCGLCLKNCPYHAIIYIP 169 >gi|118476276|ref|YP_893427.1| formate dehydrogenase, subunit alpha [Bacillus thuringiensis str. Al Hakam] gi|118415501|gb|ABK83920.1| formate dehydrogenase, alpha subunit [Bacillus thuringiensis str. Al Hakam] Length = 986 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + R + Sbjct: 133 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 190 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 I+ C+ CG C CP +A++E Sbjct: 191 WDHGVSINDSSCVSCGQCVTVCPCNALME 219 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 99 RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 158 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 159 CIACGQCVEVC 169 >gi|30260746|ref|NP_843123.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. Ames] gi|47525864|ref|YP_017213.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49183583|ref|YP_026835.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. Sterne] gi|165871793|ref|ZP_02216437.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. A0488] gi|167635652|ref|ZP_02393963.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. A0442] gi|167640648|ref|ZP_02398909.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. A0193] gi|170688486|ref|ZP_02879693.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. A0465] gi|170708211|ref|ZP_02898657.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. A0389] gi|177653752|ref|ZP_02935853.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. A0174] gi|190568151|ref|ZP_03021060.1| molybdopterin oxidoreductase family protein [Bacillus anthracis Tsiankovskii-I] gi|218901784|ref|YP_002449618.1| molybdopterin oxidoreductase family protein [Bacillus cereus AH820] gi|227816540|ref|YP_002816549.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. CDC 684] gi|228925778|ref|ZP_04088862.1| formate dehydrogenase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229120240|ref|ZP_04249491.1| formate dehydrogenase [Bacillus cereus 95/8201] gi|229601455|ref|YP_002865191.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. A0248] gi|254684332|ref|ZP_05148192.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. CNEVA-9066] gi|254722134|ref|ZP_05183923.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. A1055] gi|254738796|ref|ZP_05196499.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. Western North America USA6153] gi|254743818|ref|ZP_05201502.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. Kruger B] gi|254755020|ref|ZP_05207054.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. Vollum] gi|254762246|ref|ZP_05214090.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. Australia 94] gi|30254195|gb|AAP24609.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. Ames] gi|47501012|gb|AAT29688.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. 'Ames Ancestor'] gi|49177510|gb|AAT52886.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. Sterne] gi|164712518|gb|EDR18051.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. A0488] gi|167511363|gb|EDR86748.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. A0193] gi|167528911|gb|EDR91667.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. A0442] gi|170126867|gb|EDS95748.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. A0389] gi|170667511|gb|EDT18267.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. A0465] gi|172081144|gb|EDT66220.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. A0174] gi|190560643|gb|EDV14619.1| molybdopterin oxidoreductase family protein [Bacillus anthracis Tsiankovskii-I] gi|218539273|gb|ACK91671.1| molybdopterin oxidoreductase family protein [Bacillus cereus AH820] gi|227004272|gb|ACP14015.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. CDC 684] gi|228663281|gb|EEL18870.1| formate dehydrogenase [Bacillus cereus 95/8201] gi|228833793|gb|EEM79346.1| formate dehydrogenase [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|229265863|gb|ACQ47500.1| molybdopterin oxidoreductase family protein [Bacillus anthracis str. A0248] Length = 978 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + R + Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 I+ C+ CG C CP +A++E Sbjct: 183 WDHGVSINDSSCVSCGQCVTVCPCNALME 211 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|15678427|ref|NP_275542.1| polyferredoxin [Methanothermobacter thermautotrophicus str. Delta H] gi|2621461|gb|AAB84905.1| polyferredoxin [Methanothermobacter thermautotrophicus str. Delta H] Length = 341 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 33/140 (23%), Positives = 42/140 (30%), Gaps = 18/140 (12%) Query: 10 FLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69 +L EF + + + + E RFR ++ E CI C C Sbjct: 5 IWYLYEFAR------KSWAEKFANAHTEHEILEKPERFRDFPTVK-----REYCIGCGAC 53 Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA--IVEGPNFEFA 127 CPA I CI CG C E CP D I G N Sbjct: 54 TTACPAPGAIKLVRDTDTAEEEGQTYPVIVRGACIRCGFCAEVCPTDPKTIECGENHLI- 112 Query: 128 TETRQEL-YYDKERLLNNGD 146 R+E E+L D Sbjct: 113 ---REEFTIVPSEKLYVIDD 129 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 29/65 (44%), Gaps = 5/65 (7%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVR-----YDIDMIKCIYCGLCQEACPVDA 117 CI C C +CP TIE G T+ Y ID CI C C +ACPVDA Sbjct: 87 CIRCGFCAEVCPTDPKTIECGENHLIREEFTIVPSEKLYVIDDYLCIRCKKCMKACPVDA 146 Query: 118 IVEGP 122 I E Sbjct: 147 ITEKD 151 Score = 42.4 bits (98), Expect = 0.022, Method: Composition-based stats. Identities = 29/109 (26%), Positives = 47/109 (43%), Gaps = 14/109 (12%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 Y + CI CK C CP AIT + G R ++D +CI CG C E CPV Sbjct: 125 YVIDDYLCIRCKKCMKACPVDAITEKDG-----------RVEVDQGRCIACGECLEKCPV 173 Query: 116 DAIVEGPNFEFATETRQELYYDKE-RLLNNGDRWESEIVRNIVTDSPYR 163 ++ + + E + + + L + +SE ++ + + YR Sbjct: 174 KGALKVIHVAYVEEQK--MVINLAVNELESAIEEKSEDIKKLEAEGVYR 220 >gi|288574748|ref|ZP_06393105.1| ferredoxin [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570489|gb|EFC92046.1| ferredoxin [Dethiosulfovibrio peptidovorans DSM 11002] Length = 671 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 30/93 (32%), Gaps = 8/93 (8%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC--PAQAITIESGPRCHDGTR 91 + YPF F + + RCI C C +C A T++ R + Sbjct: 123 VRYPF----LYAPFHNDTSKETIQMDHNRCILCLRCIRVCAEKVGAHTLDLEKRGWNTNV 178 Query: 92 RTV--RYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ CG C + CP AI Sbjct: 179 VADLGHLLGQSESCVDCGACAQVCPTGAITIRD 211 >gi|196046780|ref|ZP_03114002.1| molybdopterin oxidoreductase family protein [Bacillus cereus 03BB108] gi|196022315|gb|EDX61000.1| molybdopterin oxidoreductase family protein [Bacillus cereus 03BB108] Length = 978 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + R + Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 I+ C+ CG C CP +A++E Sbjct: 183 WDHGVSINDSSCVSCGQCVTVCPCNALME 211 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|160877323|ref|YP_001556639.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein [Shewanella baltica OS195] gi|160862845|gb|ABX51379.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella baltica OS195] gi|315269528|gb|ADT96381.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Shewanella baltica OS678] Length = 553 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 30/82 (36%), Gaps = 9/82 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+C C C AICP A+ C+ CGLC+ ACP I Sbjct: 419 NVEKCTMCMSCVAICPTVALQDGGDKPALH---------FIEQNCVQCGLCEAACPEKVI 469 Query: 119 VEGPNFEFATETRQELYYDKER 140 P F RQ+ + KE Sbjct: 470 SLTPQINFDKAARQQQHTLKEE 491 Score = 38.9 bits (89), Expect = 0.23, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 11/53 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C CPA AI+ + +ID C G C ACP AI Sbjct: 195 CNRCLNFCPADAISSVAKK-----------IEIDPYLCHGAGSCTSACPTGAI 236 >gi|78043073|ref|YP_361194.1| iron-sulfur cluster-binding protein [Carboxydothermus hydrogenoformans Z-2901] gi|77995188|gb|ABB14087.1| iron-sulfur cluster-binding protein [Carboxydothermus hydrogenoformans Z-2901] Length = 372 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 27/115 (23%), Positives = 39/115 (33%), Gaps = 13/115 (11%) Query: 18 GAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA 77 L F I + ++ P ERC+ C C CP +A Sbjct: 270 SGKGLTFN--FAPPNNIESLDGRIPAFLVRFFQNQFTARPVMNERCVGCGRCARHCPPKA 327 Query: 78 ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 + IE+ +D KCI C CQE CP +A+ F +R+ Sbjct: 328 VKIENRRAI-----------VDYNKCIRCYCCQELCPANAVELKEGFLMRLFSRK 371 >gi|52144723|ref|YP_082108.1| formate dehydrogenase, alpha subunit, anaerobic [Bacillus cereus E33L] gi|51978192|gb|AAU19742.1| formate dehydrogenase, alpha subunit, anaerobic [Bacillus cereus E33L] Length = 978 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + R + Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 I+ C+ CG C CP +A++E Sbjct: 183 WDHGVSINDSSCVSCGQCVTVCPCNALME 211 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|311279508|ref|YP_003941739.1| electron transport complex, RnfABCDGE type, C subunit [Enterobacter cloacae SCF1] gi|308748703|gb|ADO48455.1| electron transport complex, RnfABCDGE type, C subunit [Enterobacter cloacae SCF1] Length = 679 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQDEKGCIRCSACADACPAD-LLPQQLYWFSKGQQHDKAQTHNLSDCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQELYY--DKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEQRAAEAKARFEARQARLEREKAARLER 477 >gi|300245945|gb|ADJ94030.1| putative respiratory-chain NADH dehydrogenase domain [Clostridia bacterium enrichment culture clone BF] Length = 603 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 26/66 (39%), Positives = 29/66 (43%), Gaps = 10/66 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L RY EE+C C C CP AI E + +D KCI CGLC A Sbjct: 542 LIRYEVTEEKCKGCGRCNKQCPTGAIAGEKKQP----------FALDQGKCIRCGLCINA 591 Query: 113 CPVDAI 118 C DAI Sbjct: 592 CKFDAI 597 >gi|302555319|ref|ZP_07307661.1| respiratory chain oxidoreductase [Streptomyces viridochromogenes DSM 40736] gi|302472937|gb|EFL36030.1| respiratory chain oxidoreductase [Streptomyces viridochromogenes DSM 40736] Length = 286 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 4/75 (5%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID----MIKCIYCGLCQE 111 Y ++CI C C C Q + G + + D C+YCG C E Sbjct: 145 YIRDYDKCILCYKCVDACGDQWQNSFAISVAGRGFDARISVEHDGPLTDSACVYCGNCIE 204 Query: 112 ACPVDAIVEGPNFEF 126 CP A+ F+ Sbjct: 205 VCPTGALSFKSEFDM 219 >gi|225181056|ref|ZP_03734503.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dethiobacter alkaliphilus AHT 1] gi|225168253|gb|EEG77057.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dethiobacter alkaliphilus AHT 1] Length = 416 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 22/97 (22%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C C CP AI + + ID C+ CG+C CP A+V Sbjct: 290 CTGCGKCVQACPVDAIGVTDKEE--------KKAQIDTEYCLGCGVCTVQCPTKALVLKK 341 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 K+++L+ + +E +++++ D Sbjct: 342 R--------------KQKVLHPENTFERVLLQSLERD 364 >gi|213029517|ref|ZP_03343964.1| anaerobic sulfite reductase subunit C [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 216 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 29/94 (30%), Gaps = 8/94 (8%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 + P + S G + + +RCI C C C A+ + Sbjct: 26 KTVIVGCPNDCAKASMADLGIIGVAKMRFTADRCIGCGACVKACSHHAVGCLALKNGKAV 85 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + CI CG C ACP A P+ Sbjct: 86 K--------EESACIGCGECVLACPTLAWQRKPD 111 >gi|120405062|ref|YP_954891.1| putative glutamate synthase (NADPH) small subunit [Mycobacterium vanbaalenii PYR-1] gi|119957880|gb|ABM14885.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Mycobacterium vanbaalenii PYR-1] Length = 543 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 5/64 (7%) Query: 58 NGEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 RC++C C A ++ + G R YD KC C +C + CPV Sbjct: 479 YESGRCLSCGNCFECDGCLGACPEDAVIKLGVGQRYRFDYD----KCTGCAVCADQCPVH 534 Query: 117 AIVE 120 AI Sbjct: 535 AIEM 538 >gi|299143765|ref|ZP_07036845.1| iron-sulfur cluster-binding protein [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518250|gb|EFI41989.1| iron-sulfur cluster-binding protein [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 316 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 33/127 (25%), Positives = 43/127 (33%), Gaps = 15/127 (11%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P++ + + N CIACKLCE CP AI + Sbjct: 190 IPYKAKTVVDCHSNDVGKDVRVNCSVGCIACKLCEKNCPKDAIHVVDNLA---------- 239 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVE---GPNFEFATETRQELYYDKERLLNNGDRWESEI 152 ID KCI CG+C CP AI + R E K+ LL R + E Sbjct: 240 -RIDYTKCINCGICVSKCPTGAIFCEYPERVEKMKERQRLEAEKKKQELLE-AKRAQQEA 297 Query: 153 VRNIVTD 159 + Sbjct: 298 AEKANAE 304 >gi|229028382|ref|ZP_04184506.1| formate dehydrogenase [Bacillus cereus AH1271] gi|228732930|gb|EEL83788.1| formate dehydrogenase [Bacillus cereus AH1271] Length = 978 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + + R + Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWNLDRPRVI 182 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 I+ C+ CG C CP +A++E Sbjct: 183 WDHGVSINDSSCVSCGQCVTVCPCNALME 211 Score = 39.3 bits (90), Expect = 0.16, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ + +E ++ Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKVHNTVHMMGVEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|229194900|ref|ZP_04321683.1| formate dehydrogenase [Bacillus cereus m1293] gi|228588604|gb|EEK46639.1| formate dehydrogenase [Bacillus cereus m1293] Length = 978 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + R + Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 I+ C+ CG C CP +A++E Sbjct: 183 WDHGVSINDSSCVSCGQCVTVCPCNALME 211 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|261368062|ref|ZP_05980945.1| iron-sulfur cluster-binding protein [Subdoligranulum variabile DSM 15176] gi|282570052|gb|EFB75587.1| iron-sulfur cluster-binding protein [Subdoligranulum variabile DSM 15176] Length = 368 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 11/59 (18%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E C+ C C IC A I ID KC+ CG C CP DA+ Sbjct: 194 QELCVGCGRCVKICAHDAPHIVDRKSS-----------IDQNKCVGCGRCIGVCPTDAV 241 >gi|225572493|ref|ZP_03781357.1| hypothetical protein RUMHYD_00790 [Blautia hydrogenotrophica DSM 10507] gi|225040033|gb|EEG50279.1| hypothetical protein RUMHYD_00790 [Blautia hydrogenotrophica DSM 10507] Length = 1180 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 22/102 (21%), Positives = 31/102 (30%), Gaps = 19/102 (18%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQ-----AITIESGPRCHDGTR---------RT 93 RG N + CI C C +CP A+T E +G + Sbjct: 679 RGIAVDIPIWN-PDNCIQCNRCAYVCPHAVIRPVALTEEEAANAPEGMKTLKMTGMADYK 737 Query: 94 VRYDIDMIKCIYCGLCQEACP----VDAIVEGPNFEFATETR 131 + C CG C CP V A+ A + + Sbjct: 738 FAMVVSAYDCTGCGSCANVCPGKKGVKALAMENMEANAGQQK 779 >gi|224477286|ref|YP_002634892.1| putative formate dehydrogenase [Staphylococcus carnosus subsp. carnosus TM300] gi|222421893|emb|CAL28707.1| putative formate dehydrogenase [Staphylococcus carnosus subsp. carnosus TM300] Length = 986 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 30/95 (31%), Gaps = 7/95 (7%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 K + G Y +CI C C +C + R + + Sbjct: 126 EYKPKPYEKDFGPF----YRYDPNQCILCGRCVEVCQDVQVNETLSIDWEREQPRVIWDN 181 Query: 98 ---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 I+ C+ CG C CP +A++E A Sbjct: 182 DVSINESSCVNCGQCATVCPCNAMMENKMVGNAGY 216 >gi|217968097|ref|YP_002353603.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dictyoglomus turgidum DSM 6724] gi|217337196|gb|ACK42989.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dictyoglomus turgidum DSM 6724] Length = 369 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 20/65 (30%), Gaps = 10/65 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C+ C CP A+ + CI CG C CP AI Sbjct: 191 NPNLCIGCRRCVDHCPTGALEMVDKKSKLT----------RPELCIGCGECAVVCPTSAI 240 Query: 119 VEGPN 123 N Sbjct: 241 KILWN 245 >gi|206560783|ref|YP_002231548.1| ferredoxin [Burkholderia cenocepacia J2315] gi|198036825|emb|CAR52725.1| putative electron transport-related protein [Burkholderia cenocepacia J2315] Length = 303 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 26/81 (32%), Gaps = 10/81 (12%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 +P EH E CI C LC CP AI + I Sbjct: 66 PLNPVNGTEHPRAIAFIDENLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVAS 115 Query: 102 KCIYCGLCQEACPVDAIVEGP 122 C C LC CPVD I P Sbjct: 116 LCTGCDLCVPPCPVDCIAMLP 136 >gi|196035704|ref|ZP_03103107.1| molybdopterin oxidoreductase family protein [Bacillus cereus W] gi|195991671|gb|EDX55636.1| molybdopterin oxidoreductase family protein [Bacillus cereus W] Length = 978 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + R + Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 I+ C+ CG C CP +A++E Sbjct: 183 WDHGVSINDSSCVSCGQCVTVCPCNALME 211 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|160935016|ref|ZP_02082402.1| hypothetical protein CLOLEP_03892 [Clostridium leptum DSM 753] gi|156866469|gb|EDO59841.1| hypothetical protein CLOLEP_03892 [Clostridium leptum DSM 753] Length = 571 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 37/96 (38%), Gaps = 15/96 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 LRY F+ + + + AL Y ++C C C +CP AI+ Sbjct: 488 TLRY-FRDEYEAHVKEHRCPAGVC----KALLHYEIVADKCRGCTACARVCPVGAISGT- 541 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + ID+ KCI CG C E C DAI Sbjct: 542 ---------VKQPHTIDVNKCIKCGACIEKCKFDAI 568 Score = 40.5 bits (93), Expect = 0.090, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 16/43 (37%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 ++ + + Y+I KC C C CPV AI Sbjct: 499 HVKEHRCPAGVCKALLHYEIVADKCRGCTACARVCPVGAISGT 541 >gi|83644719|ref|YP_433154.1| electron transport complex protein RnfB [Hahella chejuensis KCTC 2396] gi|123767479|sp|Q2SKU5|RNFB_HAHCH RecName: Full=Electron transport complex protein rnfB gi|83632762|gb|ABC28729.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Hahella chejuensis KCTC 2396] Length = 197 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 28/84 (33%), Gaps = 10/84 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E + E+ CI C C CP AI + + + Sbjct: 91 EAVPLDSEHGESKGKQVAYIREDECIGCTKCIQACPVDAILGAAKQ----------MHTV 140 Query: 99 DMIKCIYCGLCQEACPVDAIVEGP 122 + +C C LC E CPVD I P Sbjct: 141 IVSECTGCDLCVEPCPVDCIDMIP 164 >gi|28211392|ref|NP_782336.1| pyruvate-flavodoxin oxidoreductase [Clostridium tetani E88] gi|28203833|gb|AAO36273.1| pyruvate-flavodoxin oxidoreductase [Clostridium tetani E88] Length = 1215 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 52/133 (39%), Gaps = 31/133 (23%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTR----------RTVR 95 A+ ++ CI C C +CP I T E +G R + + Sbjct: 721 IAVNVPEWQQDNCIQCNQCSFVCPHSVIRPFLLTEEEAKNAPEGYRIVEAKGGPAFKDFK 780 Query: 96 YDID--MIKCIYCGLCQEACPVD--AIVEGP---------NFEFATE-TRQELYYDKERL 141 Y + + C CG C E CP A++ P NF ++T+ +++E +K + Sbjct: 781 YTMSVSPLDCTGCGNCAEVCPAPSKALIMKPAGTQLKEQENFAYSTKLSKKENPMNK--M 838 Query: 142 LNNGDRWESEIVR 154 G ++E ++ Sbjct: 839 TIKGSQFEQPLLE 851 >gi|148263632|ref|YP_001230338.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Geobacter uraniireducens Rf4] gi|146397132|gb|ABQ25765.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Geobacter uraniireducens Rf4] Length = 431 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 32/78 (41%), Gaps = 10/78 (12%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 +RC C C A CP + + + R+ R ID C+ CG+C +CPV AI Sbjct: 290 DRCNGCGRCVAACPVAVAELITANDPLNPARKKAR--IDRENCLGCGVCVRSCPVAAIRL 347 Query: 121 GPNFEFATETRQELYYDK 138 E+R + Sbjct: 348 --------ESRPQRVITP 357 Score = 33.9 bits (76), Expect = 8.0, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 16/39 (41%) Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139 +C CG C ACPV + R++ D+E Sbjct: 290 DRCNGCGRCVAACPVAVAELITANDPLNPARKKARIDRE 328 >gi|324324630|gb|ADY19890.1| molybdopterin oxidoreductase family protein [Bacillus thuringiensis serovar finitimus YBT-020] Length = 978 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + R + Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 I+ C+ CG C CP +A++E Sbjct: 183 WDHGVSINDSSCVSCGQCVTVCPCNALME 211 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|322437602|ref|YP_004219692.1| formate dehydrogenase, alpha subunit [Acidobacterium sp. MP5ACTX9] gi|321165495|gb|ADW71198.1| formate dehydrogenase, alpha subunit [Acidobacterium sp. MP5ACTX9] Length = 1005 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 27/85 (31%), Gaps = 3/85 (3%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR--- 95 E + + + Y +CI C C C + R + Sbjct: 140 EHPFKPKPYDVDMSNPFYRYDPSQCILCGRCVQACQTVQVNETLTIGWELDQPRVLWDGG 199 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVE 120 I C+ CG C CP +A++E Sbjct: 200 MQIGGSSCVSCGHCITVCPCNALME 224 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 25/83 (30%), Gaps = 9/83 (10%) Query: 48 RGEHALRRYPNGEERCIACKL----CEAICPAQAITIESGPRCHDGTRRTV-----RYDI 98 R E N C C C A A+ +E V Y Sbjct: 100 RAEAFDVILGNHMLYCTVCDNNNENCTVHNTAVAMKVEHQEHPFKPKPYDVDMSNPFYRY 159 Query: 99 DMIKCIYCGLCQEACPVDAIVEG 121 D +CI CG C +AC + E Sbjct: 160 DPSQCILCGRCVQACQTVQVNET 182 >gi|317153096|ref|YP_004121144.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfovibrio aespoeensis Aspo-2] gi|316943347|gb|ADU62398.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfovibrio aespoeensis Aspo-2] Length = 1168 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 31/97 (31%), Gaps = 28/97 (28%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTV----------------RYDIDMIKCI 104 + CI C C +CP AI R I+ + C+ Sbjct: 683 DNCIQCNQCAFVCPHSAIRAVLADPAELKKAPKTFEVLDAVGKDVKGQKFRIQINTLDCM 742 Query: 105 YCGLCQEACP--VDAIVE----------GPNFEFATE 129 CG C + CP A+V PNF+F+ Sbjct: 743 GCGNCADVCPAKEKALVMQPIVSQTPVQTPNFDFSQT 779 >gi|260464286|ref|ZP_05812478.1| dihydroorotate dehydrogenase family protein [Mesorhizobium opportunistum WSM2075] gi|259029910|gb|EEW31194.1| dihydroorotate dehydrogenase family protein [Mesorhizobium opportunistum WSM2075] Length = 437 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 6/78 (7%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI C C A S +++ +C+ Sbjct: 330 QYLNLNYVAKARIDQDACIKCGRCHI-----ACEDTSHQAITSMVDGVRHFEVIEAECVG 384 Query: 106 CGLCQEACPV-DAIVEGP 122 C LC CPV + I P Sbjct: 385 CNLCVNVCPVENCITMEP 402 >gi|150375768|ref|YP_001312364.1| molybdopterin oxidoreductase [Sinorhizobium medicae WSM419] gi|150030315|gb|ABR62431.1| molybdopterin oxidoreductase [Sinorhizobium medicae WSM419] Length = 850 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 3/80 (3%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 + S R + N RCI C+ C +C + G ++ Sbjct: 128 RVFHSKDIRLSPVIIMNVN---RCIQCQRCVRMCEEVVGAVALGTVEKGMDTAVTGFEGS 184 Query: 100 MIKCIYCGLCQEACPVDAIV 119 + C CG C E CPV A++ Sbjct: 185 LASCDQCGNCVEVCPVGALM 204 >gi|325290604|ref|YP_004266785.1| cobyrinic acid ac-diamide synthase [Syntrophobotulus glycolicus DSM 8271] gi|324966005|gb|ADY56784.1| cobyrinic acid ac-diamide synthase [Syntrophobotulus glycolicus DSM 8271] Length = 295 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 11/74 (14%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 + + +CI+C LC C AI + +Y++ +C CG+C Sbjct: 56 YFGMPKAVVDYRKCISCGLCLEYCRFNAIK-----------KNNSQYEVSCYECEGCGVC 104 Query: 110 QEACPVDAIVEGPN 123 + CPV AI P+ Sbjct: 105 EAFCPVQAISLQPD 118 >gi|323484501|ref|ZP_08089867.1| hypothetical protein HMPREF9474_01618 [Clostridium symbiosum WAL-14163] gi|323692562|ref|ZP_08106795.1| NADH dehydrogenase [Clostridium symbiosum WAL-14673] gi|323402279|gb|EGA94611.1| hypothetical protein HMPREF9474_01618 [Clostridium symbiosum WAL-14163] gi|323503428|gb|EGB19257.1| NADH dehydrogenase [Clostridium symbiosum WAL-14673] Length = 595 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 35/94 (37%), Gaps = 14/94 (14%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 +FF+ + + ++ AL Y E+C C LC CPA AI Sbjct: 514 HFFRDEYEAHIKEKRCPAGVC----KALLSYVIDREKCRGCTLCAKNCPAGAIIGT---- 565 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + ID KCI CG C E C AI Sbjct: 566 ------VKNPHIIDNEKCIKCGACMEKCHFGAIY 593 Score = 35.1 bits (79), Expect = 3.0, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 18/43 (41%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 I+ + + Y ID KC C LC + CP AI+ Sbjct: 523 HIKEKRCPAGVCKALLSYVIDREKCRGCTLCAKNCPAGAIIGT 565 >gi|317055057|ref|YP_004103524.1| indolepyruvate ferredoxin oxidoreductase subunit alpha [Ruminococcus albus 7] gi|315447326|gb|ADU20890.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Ruminococcus albus 7] Length = 603 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 37/93 (39%), Gaps = 16/93 (17%) Query: 38 FEKGSTSPRFRGEHAL-----RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 EKG + F+ A+ R E+CI C+ C+ + R Sbjct: 522 EEKGVKAIIFKSPCAVLIKPERPAVIDTEKCINCQKCKNLLGC-----------PGLVLR 570 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 + I+ C CGLC + CPV+AI G N E Sbjct: 571 DGKIAIEESLCTGCGLCAQVCPVNAIGGGKNAE 603 >gi|260892248|ref|YP_003238345.1| NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding protein [Ammonifex degensii KC4] gi|260864389|gb|ACX51495.1| NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding protein [Ammonifex degensii KC4] Length = 826 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 30/121 (24%), Positives = 40/121 (33%), Gaps = 23/121 (19%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 FE + + + R N CI C C +C Q I + TR D Sbjct: 126 FEVRDPGYEVKEDLFIVRDYN---LCILCGRCIRVCRTQGADILDFMKRGIETRVGTPLD 182 Query: 98 --IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRN 155 + C +CG C CP A+ +KERL G WE E V + Sbjct: 183 RSLLESGCDFCGSCVSVCPTGAL-----------------MEKERL-GKGREWELEKVHS 224 Query: 156 I 156 Sbjct: 225 R 225 >gi|253582598|ref|ZP_04859819.1| electron transport complex protein [Fusobacterium varium ATCC 27725] gi|251835468|gb|EES64008.1| electron transport complex protein [Fusobacterium varium ATCC 27725] Length = 333 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 33/89 (37%), Gaps = 11/89 (12%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 K P K T E CI C LC+ CP AIT+E+ Sbjct: 185 KKVISMLPQNKKVTVLCSSKEKGATARKACSTACIGCGLCKKACPVDAITVENNLA---- 240 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ID KCI CGLC CP +AI Sbjct: 241 -------KIDPEKCIQCGLCAAKCPTNAI 262 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 8/60 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+CI C LC A CP AI E + +I KC+ C LC + CPV A+ Sbjct: 243 DPEKCIQCGLCAAKCPTNAIKSEIKEV--------KKAEIIEEKCVGCTLCAKVCPVGAV 294 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 5/70 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQEAC 113 E++CI+C LC+ CP + I++ + + CI CGLC++AC Sbjct: 169 NEDKCISCGLCQKACPKKVISMLPQNKKVTVLCSSKEKGATARKACSTACIGCGLCKKAC 228 Query: 114 PVDAIVEGPN 123 PVDAI N Sbjct: 229 PVDAITVENN 238 Score = 41.2 bits (95), Expect = 0.042, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 10/81 (12%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 K T+ +++ EE+C+ C LC +CP A+ E + ID Sbjct: 256 KCPTNAIKSEIKEVKKAEIIEEKCVGCTLCAKVCPVGAVEGELKAKHK----------ID 305 Query: 100 MIKCIYCGLCQEACPVDAIVE 120 KCI CGLC + C + AI Sbjct: 306 QEKCIGCGLCFDKCKLKAIKM 326 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 14/76 (18%) Query: 52 ALRRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 A+ Y G++ C+ CE +CP AI + ++ KCI CG Sbjct: 128 AMMLYAGGDKSCVYSCLGHGDCERVCPVNAIKVNDKGIAE----------VNEDKCISCG 177 Query: 108 LCQEACPVDAIVEGPN 123 LCQ+ACP I P Sbjct: 178 LCQKACPKKVISMLPQ 193 >gi|229171373|ref|ZP_04298958.1| formate dehydrogenase [Bacillus cereus MM3] gi|228612077|gb|EEK69314.1| formate dehydrogenase [Bacillus cereus MM3] Length = 969 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + + R + Sbjct: 116 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWNLDRPRVI 173 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 I+ C+ CG C CP +A++E Sbjct: 174 WDHGVSINDSSCVSCGQCVTVCPCNALME 202 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 82 RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 141 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 142 CIACGQCVEVC 152 >gi|220925073|ref|YP_002500375.1| formate dehydrogenase subunit alpha [Methylobacterium nodulans ORS 2060] gi|219949680|gb|ACL60072.1| formate dehydrogenase, alpha subunit [Methylobacterium nodulans ORS 2060] Length = 988 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 25/88 (28%), Gaps = 8/88 (9%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC---PAQAITIESGPRCHDGTR 91 +P E + CI C LC C + + Sbjct: 189 RFPSEARWQPDASHPAMRVNLD-----ACIQCNLCVRACREVQVNDVIGMAYRNADAKVV 243 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C+ CG C +ACP A++ Sbjct: 244 FDFDDPMGQSTCVACGECVQACPTGALM 271 >gi|187250889|ref|YP_001875371.1| Fe-hydrogenase large subunit family protein [Elusimicrobium minutum Pei191] gi|186971049|gb|ACC98034.1| Fe-hydrogenase large subunit family protein [Elusimicrobium minutum Pei191] Length = 478 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 6/70 (8%) Query: 57 PNGEERCIACKLCEAICPAQA------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 +C C C++ CP A E+ P + R ID CI CG C Sbjct: 144 YIEPAKCKNCGKCKSACPYGAILKLNVPCEEACPVNAIKKDQKGRAIIDHSMCISCGRCM 203 Query: 111 EACPVDAIVE 120 + CP AI+E Sbjct: 204 KVCPFGAIME 213 Score = 37.8 bits (86), Expect = 0.57, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 13/68 (19%) Query: 53 LRRYPNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 +R E C C + C CP AI++++G R I+ KC CG C+ Sbjct: 109 MRSNYMVTEVCQGCVARQCIYDCPFNAISMQNG-----------RAYIEPAKCKNCGKCK 157 Query: 111 EACPVDAI 118 ACP AI Sbjct: 158 SACPYGAI 165 >gi|220919681|ref|YP_002494984.1| formate dehydrogenase, alpha subunit [Methylobacterium nodulans ORS 2060] gi|219952101|gb|ACL62492.1| formate dehydrogenase, alpha subunit [Methylobacterium nodulans ORS 2060] Length = 988 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 25/88 (28%), Gaps = 8/88 (9%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC---PAQAITIESGPRCHDGTR 91 +P E + CI C LC C + + Sbjct: 189 RFPSEARWQPDASHPAMRVNLD-----ACIQCNLCVRACREVQVNDVIGMAYRNADAKVV 243 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C+ CG C +ACP A++ Sbjct: 244 FDFDDPMGQSTCVACGECVQACPTGALM 271 >gi|217971445|ref|YP_002356196.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein [Shewanella baltica OS223] gi|217496580|gb|ACK44773.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella baltica OS223] Length = 553 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 30/82 (36%), Gaps = 9/82 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+C C C AICP A+ C+ CGLC+ ACP I Sbjct: 419 NVEKCTMCMSCVAICPTVALQDGGDKPALH---------FIEQNCVQCGLCEAACPEKVI 469 Query: 119 VEGPNFEFATETRQELYYDKER 140 P F RQ+ + KE Sbjct: 470 SLTPQINFDKAARQQQHTLKEE 491 Score = 38.9 bits (89), Expect = 0.24, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 11/53 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C CPA AI+ + +ID C G C ACP AI Sbjct: 195 CNRCLNFCPADAISSVAKK-----------IEIDPYLCHGAGSCTSACPTGAI 236 >gi|121535575|ref|ZP_01667382.1| hydrogenase large subunit domain protein [Thermosinus carboxydivorans Nor1] gi|121305815|gb|EAX46750.1| hydrogenase large subunit domain protein [Thermosinus carboxydivorans Nor1] Length = 499 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV------RYDIDMIKCIYCGLCQ 110 + RC+ C LC+ CP AI S P + V R I+ KC+ CG C+ Sbjct: 137 FIDKNRCVECGLCKRSCPYGAIIEVSRPCERACDLKAVVAGADRRAVINYDKCVQCGACK 196 Query: 111 EACPVDAI 118 ACP AI Sbjct: 197 IACPFGAI 204 Score = 40.9 bits (94), Expect = 0.064, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 3/66 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 ++ I C I R ID +C+ CGLC+ +CP Sbjct: 98 CDRCPIDKFIVTDACRNCVAHHCINSCPKKAIAVVQNRAF---IDKNRCVECGLCKRSCP 154 Query: 115 VDAIVE 120 AI+E Sbjct: 155 YGAIIE 160 >gi|116626038|ref|YP_828194.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [Candidatus Solibacter usitatus Ellin6076] gi|116229200|gb|ABJ87909.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Candidatus Solibacter usitatus Ellin6076] Length = 1190 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 29/105 (27%), Gaps = 24/105 (22%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHD 88 T+ + AL ++ CI C C +CP A Sbjct: 675 TAQWEKRNIALEIPEWDQDLCIQCGKCVLVCPHSVIRAKVYDDSYLGNAPATFKAVPARW 734 Query: 89 GTRRTVRY--DIDMIKCIYCGLCQEACPV--------DAIVEGPN 123 + +Y + C C LC + CP AI P Sbjct: 735 KDMKDRKYTLQVAPEDCTGCTLCVQVCPAKSKSEVKHRAINMVPQ 779 >gi|94267644|ref|ZP_01290947.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium MLMS-1] gi|93451914|gb|EAT02640.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium MLMS-1] Length = 450 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 18/87 (20%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C+ C C +CP A I+ R C+ CGLC ACP AI Sbjct: 277 NDYCVKCLNCVRLCPYDAPRIDRTARVP------------AEHCLACGLCYGACPTGAIR 324 Query: 120 EGPNFEFATETRQELYYDKERLLNNGD 146 N + ++L +RLL D Sbjct: 325 LQNN------SPEQLAASSQRLLAELD 345 >gi|330957741|gb|EGH58001.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv. maculicola str. ES4326] Length = 291 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 10/75 (13%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 RG + E CI C C CP AI + + + + + +C C Sbjct: 76 RGAAPAQVAFIREAECIGCTKCIQACPVDAIVGAAK----------LMHTVIIDECTGCD 125 Query: 108 LCQEACPVDAIVEGP 122 LC CPVD I P Sbjct: 126 LCIAPCPVDCIDMHP 140 >gi|298717366|ref|YP_003730008.1| molybdopterin oxidoreductase family protein [Pantoea vagans C9-1] gi|298361555|gb|ADI78336.1| molybdopterin oxidoreductase family protein [Pantoea vagans C9-1] Length = 990 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 3/81 (3%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICP---AQAITIESGPRCHDGTRRTVRYD 97 + +H+ Y ++CI C C C + H + Sbjct: 127 PHQPKPYAKDHSNPFYTYDPDQCILCGRCVEACQNVEVNETLSIDYTQAHPRVLWDGGTE 186 Query: 98 IDMIKCIYCGLCQEACPVDAI 118 I C+ CG C CP +A+ Sbjct: 187 IAGSSCVSCGHCVTVCPCNAL 207 Score = 37.4 bits (85), Expect = 0.62, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 20/69 (28%), Gaps = 9/69 (13%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAIT-----IESGPRCHDGTRRTVRYDIDMIKCI 104 R E C C C + P+ + Y D +CI Sbjct: 91 RLLNRHELYCTVCEHNTGDCTLHNAVADMHIPIQYYPHQPKPYAKDHSNPFYTYDPDQCI 150 Query: 105 YCGLCQEAC 113 CG C EAC Sbjct: 151 LCGRCVEAC 159 >gi|157364627|ref|YP_001471394.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Thermotoga lettingae TMO] gi|157315231|gb|ABV34330.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Thermotoga lettingae TMO] Length = 100 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 37/91 (40%), Gaps = 10/91 (10%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E G+ G+ ++R +CI C +C CP AI E+ I Sbjct: 18 EPGTARKYKTGDWRVKRPVYDRSKCIDCMMCWFYCPDLAIIQENSVMKG----------I 67 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 + C CG+C CP +AI P EF+ E Sbjct: 68 NYFYCKGCGICANVCPRNAIEMRPETEFSHE 98 >gi|126176318|ref|YP_001052467.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Shewanella baltica OS155] gi|125999523|gb|ABN63598.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella baltica OS155] Length = 553 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 30/82 (36%), Gaps = 9/82 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+C C C AICP A+ C+ CGLC+ ACP I Sbjct: 419 NVEKCTMCMSCVAICPTVALQDGGDKPALH---------FIEQNCVQCGLCEAACPEKVI 469 Query: 119 VEGPNFEFATETRQELYYDKER 140 P F RQ+ + KE Sbjct: 470 SLTPQINFDKAARQQQHTLKEE 491 Score = 38.9 bits (89), Expect = 0.24, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 11/53 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C CPA AI+ + +ID C G C ACP AI Sbjct: 195 CNRCLNFCPADAISSVAKK-----------IEIDPYLCHGAGSCTSACPTGAI 236 >gi|325570024|ref|ZP_08145949.1| pyruvate-ferredoxin oxidoreductase [Enterococcus casseliflavus ATCC 12755] gi|325156852|gb|EGC69023.1| pyruvate-ferredoxin oxidoreductase [Enterococcus casseliflavus ATCC 12755] Length = 1227 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 31/83 (37%), Gaps = 20/83 (24%) Query: 61 ERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTVRYDIDMIKCI 104 +RC C C +CP AI I R +G + R + + C Sbjct: 690 DRCTMCNECAFVCPHAAIRPFLADEDELTEAPEGFIVREMRGANGQKY--RIQVSVEDCT 747 Query: 105 YCGLCQEACPV--DAIVEGPNFE 125 CGLC EACP A+ P E Sbjct: 748 GCGLCVEACPAKGKALTMRPYEE 770 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 4/54 (7%) Query: 101 IKCIYCGLCQEACPVDAI--VEGPNFEFATETRQELYYDKERLLNNGDRWESEI 152 +C C C CP AI E TE + +E NG ++ ++ Sbjct: 690 DRCTMCNECAFVCPHAAIRPFLADEDEL-TEAPEGFIV-REMRGANGQKYRIQV 741 >gi|315651297|ref|ZP_07904325.1| Fe-hydrogenase large subunit family protein [Eubacterium saburreum DSM 3986] gi|315486449|gb|EFU76803.1| Fe-hydrogenase large subunit family protein [Eubacterium saburreum DSM 3986] Length = 507 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 6/66 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQEA 112 +E+CI C C +C AI I++ P + DID KC+ CG C Sbjct: 150 NQEKCIKCGRCANVCAYNAIIIQTRPCAASCGMDAISSDENGKADIDYDKCVSCGQCLVN 209 Query: 113 CPVDAI 118 CP AI Sbjct: 210 CPFGAI 215 Score = 38.9 bits (89), Expect = 0.24, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 27/92 (29%), Gaps = 9/92 (9%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 T P G R Y + C +CP A+ I+ Sbjct: 90 KAETYYTPPLINIIKFACHGCVEKRVYVTNGCQGCLAHPCAEVCPTGAVKIDKESGFSS- 148 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 I+ KCI CG C C +AI+ Sbjct: 149 --------INQEKCIKCGRCANVCAYNAIIIQ 172 >gi|257875571|ref|ZP_05655224.1| pyruvate decarboxylase [Enterococcus casseliflavus EC20] gi|257809737|gb|EEV38557.1| pyruvate decarboxylase [Enterococcus casseliflavus EC20] Length = 1227 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 31/83 (37%), Gaps = 20/83 (24%) Query: 61 ERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTVRYDIDMIKCI 104 +RC C C +CP AI I R +G + R + + C Sbjct: 690 DRCTMCNECAFVCPHAAIRPFLADEDELTEAPEGFIVREMRGANGQKY--RIQVSVEDCT 747 Query: 105 YCGLCQEACPV--DAIVEGPNFE 125 CGLC EACP A+ P E Sbjct: 748 GCGLCVEACPAKGKALTMRPYEE 770 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 4/54 (7%) Query: 101 IKCIYCGLCQEACPVDAI--VEGPNFEFATETRQELYYDKERLLNNGDRWESEI 152 +C C C CP AI E TE + +E NG ++ ++ Sbjct: 690 DRCTMCNECAFVCPHAAIRPFLADEDEL-TEAPEGFIV-REMRGANGQKYRIQV 741 >gi|257865944|ref|ZP_05645597.1| pyruvate decarboxylase [Enterococcus casseliflavus EC30] gi|257872277|ref|ZP_05651930.1| pyruvate decarboxylase [Enterococcus casseliflavus EC10] gi|257799878|gb|EEV28930.1| pyruvate decarboxylase [Enterococcus casseliflavus EC30] gi|257806441|gb|EEV35263.1| pyruvate decarboxylase [Enterococcus casseliflavus EC10] Length = 1227 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 31/83 (37%), Gaps = 20/83 (24%) Query: 61 ERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTVRYDIDMIKCI 104 +RC C C +CP AI I R +G + R + + C Sbjct: 690 DRCTMCNECAFVCPHAAIRPFLADEDELTEAPEGFIVREMRGANGQKY--RIQVSVEDCT 747 Query: 105 YCGLCQEACPV--DAIVEGPNFE 125 CGLC EACP A+ P E Sbjct: 748 GCGLCVEACPAKGKALTMRPYEE 770 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 4/54 (7%) Query: 101 IKCIYCGLCQEACPVDAI--VEGPNFEFATETRQELYYDKERLLNNGDRWESEI 152 +C C C CP AI E TE + +E NG ++ ++ Sbjct: 690 DRCTMCNECAFVCPHAAIRPFLADEDEL-TEAPEGFIV-REMRGANGQKYRIQV 741 >gi|225619733|ref|YP_002720990.1| iron only hydrogenase large subunit, C-terminal domain-containing protein [Brachyspira hyodysenteriae WA1] gi|225214552|gb|ACN83286.1| iron only hydrogenase large subunit, C-terminal domain protein [Brachyspira hyodysenteriae WA1] Length = 490 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 6/69 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGT------RRTVRYDIDMIKCIYCGLCQ 110 +CI C LC CP AI P + ID KCI+CG C Sbjct: 144 HIDSSKCINCGLCLKNCPYHAIIYIPVPCEESCPVGAINKNDQGKEVIDYHKCIFCGNCM 203 Query: 111 EACPVDAIV 119 CP A++ Sbjct: 204 RECPFSAMM 212 Score = 40.9 bits (94), Expect = 0.061, Method: Composition-based stats. Identities = 26/64 (40%), Positives = 29/64 (45%), Gaps = 12/64 (18%) Query: 61 ERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C AC + C CP AITI R H ID KCI CGLC + CP AI Sbjct: 116 NACQACLARPCMVNCPKDAITILDEKRAH----------IDSSKCINCGLCLKNCPYHAI 165 Query: 119 VEGP 122 + P Sbjct: 166 IYIP 169 >gi|163736984|ref|ZP_02144402.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Phaeobacter gallaeciensis BS107] gi|161389588|gb|EDQ13939.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Phaeobacter gallaeciensis BS107] Length = 649 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 23/119 (19%), Positives = 34/119 (28%), Gaps = 14/119 (11%) Query: 23 CLRYFFKAKTTINYP-FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 R + P E L N C C C ++CP+ A+ Sbjct: 464 TRRQITRQAAKALVPTAETLPLPEGAPYGAVLVSSDN----CTLCLSCVSLCPSGALGDN 519 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140 + C+ CGLC CP DAI P + ++ +E Sbjct: 520 PD---------LPQLRFQEDACLQCGLCATICPEDAITYEPRLNLTPDALSQVVLHEEE 569 Score = 37.4 bits (85), Expect = 0.63, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 19/55 (34%), Gaps = 11/55 (20%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C ICP AI+ ID + C CG C CP AI Sbjct: 276 TGCTRCLDICPTGAISPAGD-----------HVSIDPMICAGCGSCASLCPSGAI 319 >gi|153940176|ref|YP_001392096.1| dihydropyrimidine dehydrogenase [Clostridium botulinum F str. Langeland] gi|152936072|gb|ABS41570.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum F str. Langeland] gi|295320101|gb|ADG00479.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum F str. 230613] Length = 411 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 33/110 (30%), Gaps = 7/110 (6%) Query: 15 EFVGAFFLCLRY-FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + + ++ F+ + K + EE C+ C C C Sbjct: 295 DMIEGLSYYMKEKGFEKLEDMVGLANKNIIPAEDLDRGYIVYPKFNEENCVGCGRCYISC 354 Query: 74 PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 G + + + +D C+ C LC CPV I +G Sbjct: 355 YDG------GHQAIKWDGKNRKPMLDKENCVGCHLCANVCPVQCISKGEI 398 >gi|84489021|ref|YP_447253.1| Fe-S center containing protein [Methanosphaera stadtmanae DSM 3091] gi|84372340|gb|ABC56610.1| predicted Fe-S center containing protein [Methanosphaera stadtmanae DSM 3091] Length = 367 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 36/108 (33%), Gaps = 22/108 (20%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + F L+ + + + F + A C+AC +C CP Sbjct: 159 ILAGFGGALKNLAMGCASRRGKIHQHKIAAPFISKIA----------CLACNVCIDACPE 208 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 AIT++ I+ KCI C C ACP +AI Sbjct: 209 NAITVD------------THAHINYEKCIGCNDCIGACPKNAIKLNKI 244 >gi|52785968|ref|YP_091797.1| YjgC [Bacillus licheniformis ATCC 14580] gi|52348470|gb|AAU41104.1| YjgC [Bacillus licheniformis ATCC 14580] Length = 1010 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 9/101 (8%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 ++ + PF++ + + + Y ++CI C C C +T Sbjct: 139 TVKEM--KVNHQSIPFDQKP----YHKDESNPFYRYDPDQCILCGRCVEACQDVQVTETL 192 Query: 83 GPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPVDAIVE 120 R + + I+ C+ CG C CP +A++E Sbjct: 193 TIDWERKRPRVIWDNDVPINESSCVSCGHCSTVCPCNAMME 233 Score = 40.5 bits (93), Expect = 0.083, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 21/66 (31%), Gaps = 9/66 (13%) Query: 57 PNGEERCIAC----KLCEAI-----CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 N E C C CE +I + + Y D +CI CG Sbjct: 118 YNHELYCTVCDYNNGGCEIHNTVKEMKVNHQSIPFDQKPYHKDESNPFYRYDPDQCILCG 177 Query: 108 LCQEAC 113 C EAC Sbjct: 178 RCVEAC 183 >gi|294617417|ref|ZP_06697051.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecium E1679] gi|291596323|gb|EFF27582.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecium E1679] Length = 731 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 20/93 (21%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTV 94 AL +RC C C +CP AI I R DG + Sbjct: 181 VALEVPQWISDRCTMCNECAFVCPHAAIRPFLADEEEMEEAPEGFIVREMRGADGVKY-- 238 Query: 95 RYDIDMIKCIYCGLCQEACP--VDAIVEGPNFE 125 R + + C CGLC EACP A+V P E Sbjct: 239 RIQVSVEDCTGCGLCVEACPAKEKALVMKPYEE 271 >gi|196041311|ref|ZP_03108605.1| molybdopterin oxidoreductase family protein [Bacillus cereus NVH0597-99] gi|196027796|gb|EDX66409.1| molybdopterin oxidoreductase family protein [Bacillus cereus NVH0597-99] Length = 978 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + R + Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 I+ C+ CG C CP +A++E Sbjct: 183 WDHGVSINDSSCVSCGQCVTVCPCNALME 211 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|31747592|gb|AAO38266.1| NADP-reducing hydrogenase subunit C [Leptospirillum ferrooxidans] Length = 617 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 10/66 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L +Y EE C C LCE +CP+ ++T E G H ID+ CI C C +A Sbjct: 561 LIKYVVIEEDCTTCGLCEPVCPSGSVTWEKGEVAH----------IDLTTCIRCKACVDA 610 Query: 113 CPVDAI 118 C AI Sbjct: 611 CKFRAI 616 Score = 33.9 bits (76), Expect = 6.7, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 15/42 (35%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 I ++Y + C CGLC+ CP ++ Sbjct: 547 HIRDKRCPGTVCNDLIKYVVIEEDCTTCGLCEPVCPSGSVTW 588 >gi|257869231|ref|ZP_05648884.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Enterococcus gallinarum EG2] gi|257803395|gb|EEV32217.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Enterococcus gallinarum EG2] Length = 1231 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 29/80 (36%), Gaps = 18/80 (22%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTV 94 AL +RC C C +CP AI I R DG + + Sbjct: 680 IALEVPEWLSDRCTMCNECAFVCPHAAIRPFLVDEDELTEAPEGFIVREMRGKDGQKYRI 739 Query: 95 RYDIDMIKCIYCGLCQEACP 114 + I C CGLC EACP Sbjct: 740 QVSI--EDCTGCGLCVEACP 757 Score = 34.3 bits (77), Expect = 5.9, Method: Composition-based stats. Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 4/54 (7%) Query: 101 IKCIYCGLCQEACPVDAI--VEGPNFEFATETRQELYYDKERLLNNGDRWESEI 152 +C C C CP AI E TE + +E +G ++ ++ Sbjct: 690 DRCTMCNECAFVCPHAAIRPFLVDEDEL-TEAPEGFIV-REMRGKDGQKYRIQV 741 >gi|257470438|ref|ZP_05634529.1| electron transport complex, RnfABCDGE type, B subunit [Fusobacterium ulcerans ATCC 49185] gi|317064646|ref|ZP_07929131.1| electron transport complex protein [Fusobacterium ulcerans ATCC 49185] gi|313690322|gb|EFS27157.1| electron transport complex protein [Fusobacterium ulcerans ATCC 49185] Length = 333 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 33/89 (37%), Gaps = 11/89 (12%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 K P K T E CI C LC+ CP AIT+E+ Sbjct: 185 KKVISMLPQNKKVTVLCSSKEKGATARKACSTACIGCGLCKKACPVDAITVENNLA---- 240 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ID KCI CGLC CP +AI Sbjct: 241 -------KIDPEKCIQCGLCAAKCPTNAI 262 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 8/60 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+CI C LC A CP AI E + +I KC+ C LC + CPV A+ Sbjct: 243 DPEKCIQCGLCAAKCPTNAIKSEIKE--------IKKAEIIEEKCVGCTLCAKVCPVGAV 294 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 5/70 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQEAC 113 E++CI+C LC+ CP + I++ + + CI CGLC++AC Sbjct: 169 DEDKCISCGLCQKACPKKVISMLPQNKKVTVLCSSKEKGATARKACSTACIGCGLCKKAC 228 Query: 114 PVDAIVEGPN 123 PVDAI N Sbjct: 229 PVDAITVENN 238 Score = 42.0 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 10/81 (12%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 K T+ +++ EE+C+ C LC +CP A+ E + ID Sbjct: 256 KCPTNAIKSEIKEIKKAEIIEEKCVGCTLCAKVCPVGAVEGELKAKHK----------ID 305 Query: 100 MIKCIYCGLCQEACPVDAIVE 120 KCI CGLC + C + AI Sbjct: 306 QEKCIGCGLCFDKCKLKAIKM 326 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 14/76 (18%) Query: 52 ALRRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 A+ Y G++ C+ CE +CP AI + +D KCI CG Sbjct: 128 AMMLYAGGDKSCVYSCLGHGDCERVCPVNAIKVNDKGIAE----------VDEDKCISCG 177 Query: 108 LCQEACPVDAIVEGPN 123 LCQ+ACP I P Sbjct: 178 LCQKACPKKVISMLPQ 193 >gi|257463641|ref|ZP_05628032.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. D12] gi|317061193|ref|ZP_07925678.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. D12] gi|313686869|gb|EFS23704.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. D12] Length = 1193 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 39/122 (31%), Gaps = 22/122 (18%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE---SGPRCHDGTRRTV 94 FE G+++ RG + +CI C C +CP I + Sbjct: 677 FENGTSAFEKRGVAVDVPLWD-STKCIQCNQCSYVCPHAVIRPFLVSEEEKAASPVAFDT 735 Query: 95 -------------RYDIDMIKCIYCGLCQEACPVD--AIVEGPN---FEFATETRQELYY 136 R + + C+ CG C CP AI P + + + + + Sbjct: 736 LKAMGKGLDGLTYRIQVSPLDCVGCGSCVNVCPAPGKAITMQPIAMSMDAEEDKKADYLF 795 Query: 137 DK 138 +K Sbjct: 796 NK 797 >gi|296136161|ref|YP_003643403.1| hypothetical protein Tint_1703 [Thiomonas intermedia K12] gi|295796283|gb|ADG31073.1| hypothetical protein Tint_1703 [Thiomonas intermedia K12] Length = 273 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 40/112 (35%), Gaps = 20/112 (17%) Query: 29 KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA-----CKLCEAICPAQAITIESG 83 K + T +P G G+ + P + C + C C A CPA AIT Sbjct: 11 KGRATTPWPERPGPD-----GQEGVLGLPRFDATCCSSEQSGCSDCVAACPASAITRSEA 65 Query: 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 +D +C+ C LC E CP A ++ F + +L Sbjct: 66 GAI----------QLDYARCVGCQLCTEVCPEGAFSVSHDWAFGVRDKADLL 107 >gi|229137387|ref|ZP_04265999.1| formate dehydrogenase [Bacillus cereus BDRD-ST26] gi|228646086|gb|EEL02308.1| formate dehydrogenase [Bacillus cereus BDRD-ST26] Length = 969 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + R + Sbjct: 116 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 173 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 I+ C+ CG C CP +A++E Sbjct: 174 WDHGVSINDSSCVSCGQCVTVCPCNALME 202 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 82 RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 141 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 142 CIACGQCVEVC 152 >gi|126465204|ref|YP_001040313.1| indolepyruvate ferredoxin oxidoreductase, subunit iorA [Staphylothermus marinus F1] gi|126014027|gb|ABN69405.1| indolepyruvate ferredoxin oxidoreductase, subunit iorA [Staphylothermus marinus F1] Length = 624 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 9/73 (12%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 L Y +++C C +C + AI + G + I C CG Sbjct: 548 HKGIKLPVYTILQDKCTGCMVCVNLLGCPAIIVPKGAKKP---------VILSELCAGCG 598 Query: 108 LCQEACPVDAIVE 120 LC + CP +AIV Sbjct: 599 LCAQVCPFNAIVL 611 >gi|319645446|ref|ZP_07999678.1| YjgC protein [Bacillus sp. BT1B_CT2] gi|317392332|gb|EFV73127.1| YjgC protein [Bacillus sp. BT1B_CT2] Length = 1035 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 37/101 (36%), Gaps = 9/101 (8%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 ++ + PF++ + + + Y ++CI C C C +T Sbjct: 164 TVKEM--KVNHQSIPFDQKP----YHKDESNPFYRYDPDQCILCGRCVEACQDVQVTETL 217 Query: 83 GPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPVDAIVE 120 R + + I+ C+ CG C CP +A++E Sbjct: 218 TIDWERKRPRVIWDNDVPINESSCVSCGHCSTVCPCNAMME 258 Score = 40.5 bits (93), Expect = 0.086, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 21/66 (31%), Gaps = 9/66 (13%) Query: 57 PNGEERCIAC----KLCEAI-----CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 N E C C CE +I + + Y D +CI CG Sbjct: 143 YNHELYCTVCDYNNGGCEIHNTVKEMKVNHQSIPFDQKPYHKDESNPFYRYDPDQCILCG 202 Query: 108 LCQEAC 113 C EAC Sbjct: 203 RCVEAC 208 >gi|312897374|ref|ZP_07756798.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Megasphaera micronuciformis F0359] gi|310621435|gb|EFQ04971.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Megasphaera micronuciformis F0359] Length = 1174 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 34/114 (29%), Gaps = 20/114 (17%) Query: 31 KTTINYPFEKGSTS-----PRFRGEHALRRYPNGEERCIACKLCEAICPA---------- 75 +I FE G RG + E+CI C C +CP Sbjct: 655 PVSIFDGFEDGHWPTGTCAEEKRGVAMFVPSWDN-EKCIGCNQCSFVCPHAAIRPFLLTD 713 Query: 76 ----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 +A + + ++ C+ CG C CP A+ P E Sbjct: 714 EEAAKAPEGYTNKVIKTAGDYKYSIVVSVMDCLGCGSCTHVCPKQALTMKPFDE 767 >gi|303257784|ref|ZP_07343794.1| pyridine nucleotide-disulfide oxidoreductase family protein [Burkholderiales bacterium 1_1_47] gi|302859387|gb|EFL82468.1| pyridine nucleotide-disulfide oxidoreductase family protein [Burkholderiales bacterium 1_1_47] Length = 542 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 21/62 (33%), Gaps = 8/62 (12%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C+ C C +CP A+ Y + C CG+C CP AI Sbjct: 487 NCLQCDNCYGVCPDNAVIKTGDDNVP--------YIFNYDYCKGCGVCASECPCGAIKME 538 Query: 122 PN 123 P Sbjct: 539 PE 540 >gi|291287575|ref|YP_003504391.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio acetiphilus DSM 12809] gi|290884735|gb|ADD68435.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio acetiphilus DSM 12809] Length = 778 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 29/98 (29%) Query: 24 LRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG 83 L F KA + P A + RC++C C + E Sbjct: 672 LDNFEKAPVIPQDKIKDEYYHPLNATRVAEMEAGDETTRCMSCGFCRDCSFCLEVCPEQA 731 Query: 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 + T Y + KCI CG+C CP Sbjct: 732 ITRTENPDGTFEYLSNPSKCIGCGICAGVCPCGVWTMH 769 >gi|188587083|ref|YP_001918628.1| glycyl-radical enzyme activating protein family [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351770|gb|ACB86040.1| glycyl-radical enzyme activating protein family [Natranaerobius thermophilus JW/NM-WN-LF] Length = 310 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 38/99 (38%), Gaps = 11/99 (11%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 + G + C+ C LC+ ICP AI E I+ Sbjct: 41 RCEWCHNPEGLAFESQLLIHHNSCMDCGLCQEICPENAIFTEQN-----------STQIN 89 Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 KC C +CQE+CPV+AI A + +E+ DK Sbjct: 90 QEKCKKCSICQESCPVNAIEMIGEQMTANKVIEEVEKDK 128 Score = 37.0 bits (84), Expect = 0.84, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 18/48 (37%) Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +G + I C+ CGLCQE CP +AI N Sbjct: 37 GCPLRCEWCHNPEGLAFESQLLIHHNSCMDCGLCQEICPENAIFTEQN 84 >gi|158634516|gb|ABW76110.1| pyruvate:ferredoxin oxidoreductase [Trimastix pyriformis] Length = 1200 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/107 (18%), Positives = 33/107 (30%), Gaps = 19/107 (17%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQ--------------AITIESGPRCHDGTR-- 91 RG + +C+ C +C +CP A E + Sbjct: 677 RGLAPSVPAWDLNGKCVQCAMCSFVCPHAVIRPYLVTDAEAQAAPYKEGFAVKPTKGKEF 736 Query: 92 --RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 + R + ++ C CG C CPV A+ P + + Y Sbjct: 737 EGYSFRIQVSVMDCTGCGSCANVCPVKALEMKP-YPTQARQHENWMY 782 >gi|84499617|ref|ZP_00997905.1| NAD-dependent formate dehydrogenase, alpha subunit [Oceanicola batsensis HTCC2597] gi|84392761|gb|EAQ04972.1| NAD-dependent formate dehydrogenase, alpha subunit [Oceanicola batsensis HTCC2597] Length = 974 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 29/81 (35%), Gaps = 4/81 (4%) Query: 55 RYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + +CI C C C A+TIES + D C+ CG C Sbjct: 187 YFTYDPAKCIVCSRCVRACEEVQGTFALTIESRGFDSRVSFGAKSDDALHSDCVSCGACV 246 Query: 111 EACPVDAIVEGPNFEFATETR 131 +ACP + E E T R Sbjct: 247 QACPTATLQEKSVAEMGTPDR 267 >gi|330502370|ref|YP_004379239.1| electron transport complex protein RnfC [Pseudomonas mendocina NK-01] gi|328916656|gb|AEB57487.1| electron transport complex protein RnfC [Pseudomonas mendocina NK-01] Length = 814 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 2/98 (2%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 CI C C CPA + + G ++ CI CG C CP +I Sbjct: 371 PCIRCGECAEACPAS-LLPQQLHFFALGQEHEQLKAHNLFDCIECGACAYVCP-SSIPLV 428 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 + A +EL + + ++ R+E R + Sbjct: 429 QYYRVAKAEIRELEQKQLKAEHSKQRFEQRQERLRRAE 466 >gi|304395180|ref|ZP_07377064.1| formate dehydrogenase, alpha subunit [Pantoea sp. aB] gi|304357433|gb|EFM21796.1| formate dehydrogenase, alpha subunit [Pantoea sp. aB] Length = 990 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 3/81 (3%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICP---AQAITIESGPRCHDGTRRTVRYD 97 + +H+ Y ++CI C C C + H + Sbjct: 127 PHQPKPYAKDHSNPFYTYDPDQCILCGRCVEACQNVEVNETLSIDYTQAHPRVLWDGGTE 186 Query: 98 IDMIKCIYCGLCQEACPVDAI 118 I C+ CG C CP +A+ Sbjct: 187 IAGSSCVSCGHCVTVCPCNAL 207 Score = 37.4 bits (85), Expect = 0.59, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 20/69 (28%), Gaps = 9/69 (13%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAIT-----IESGPRCHDGTRRTVRYDIDMIKCI 104 R E C C C + P+ + Y D +CI Sbjct: 91 RLLNRHELYCTVCEHNTGDCTLHNTVADMHIPIQYYPHQPKPYAKDHSNPFYTYDPDQCI 150 Query: 105 YCGLCQEAC 113 CG C EAC Sbjct: 151 LCGRCVEAC 159 >gi|300246023|gb|ADJ94069.1| putative respiratory-chain NADH dehydrogenase [Clostridia bacterium enrichment culture clone BF] Length = 597 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 32/70 (45%), Gaps = 10/70 (14%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 AL Y + C C C +CPA AIT E + ID KCI CG C E Sbjct: 538 ALLEYKIVADNCKGCGACARVCPASAITGEKKEA----------HVIDTSKCIKCGSCIE 587 Query: 112 ACPVDAIVEG 121 C +AIV+G Sbjct: 588 KCKFNAIVKG 597 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 16/59 (27%), Gaps = 8/59 (13%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 I + Y I C CG C CP AI E ++ D Sbjct: 525 HIHDKKCPAGVCSALLEYKIVADNCKGCGACARVCPASAI--------TGEKKEAHVID 575 >gi|294636318|ref|ZP_06714715.1| sulfite reductase, subunit C [Edwardsiella tarda ATCC 23685] gi|291090401|gb|EFE22962.1| sulfite reductase, subunit C [Edwardsiella tarda ATCC 23685] Length = 335 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 27/88 (30%), Gaps = 8/88 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + + G + R ERCI C C C A+ S Sbjct: 153 CPNDCAKATMADLGVLGIARIKFTPERCIGCGACVRACKHHAVDCLSLHNGKASK----- 207 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPN 123 CI CG C ACP A P+ Sbjct: 208 ---QESLCIGCGECVLACPTLAWQRQPD 232 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 14/54 (25%), Gaps = 1/54 (1%) Query: 68 LCEAICPAQAI-TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + A G R +CI CG C AC A+ Sbjct: 144 YHLKVVLAGCPNDCAKATMADLGVLGIARIKFTPERCIGCGACVRACKHHAVDC 197 >gi|294890821|ref|XP_002773331.1| 68 kDa protein, putative [Perkinsus marinus ATCC 50983] gi|239878383|gb|EER05147.1| 68 kDa protein, putative [Perkinsus marinus ATCC 50983] Length = 614 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 1/74 (1%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 E LR E+RC K C+ C +G C + R + I CI CG+ Sbjct: 16 EEQRLRIAIVSEDRCKP-KKCQLECKKYCPVNRTGKFCVEVDRHSKVSWISETLCIGCGI 74 Query: 109 CQEACPVDAIVEGP 122 C + CP DAI Sbjct: 75 CVKKCPFDAITIIN 88 >gi|167756634|ref|ZP_02428761.1| hypothetical protein CLORAM_02171 [Clostridium ramosum DSM 1402] gi|237733922|ref|ZP_04564403.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|167702809|gb|EDS17388.1| hypothetical protein CLORAM_02171 [Clostridium ramosum DSM 1402] gi|229383003|gb|EEO33094.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 507 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110 +++CI C LC+ CP AI P + D I+ KC+ CG+C Sbjct: 144 YIDQDKCIKCGLCKTNCPYDAILKRERPCAKACGMDAIETDEYGNAHINYDKCVSCGMCL 203 Query: 111 EACPVDAI 118 +CP AI Sbjct: 204 VSCPFGAI 211 Score = 41.6 bits (96), Expect = 0.033, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 28/92 (30%), Gaps = 11/92 (11%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEER------CIACKLCEAICPAQAITIESGPRCHDGTR 91 E S +Y C C + + + P + Sbjct: 74 DEPAPISKGIEESIIADKYYEPPLINIIKFACNKCPEKKFEVSSGCQACLAHPCIEVCPK 133 Query: 92 RTVRYD-----IDMIKCIYCGLCQEACPVDAI 118 + + ID KCI CGLC+ CP DAI Sbjct: 134 NAISFKDGKAYIDQDKCIKCGLCKTNCPYDAI 165 >gi|323484215|ref|ZP_08089584.1| hypothetical protein HMPREF9474_01335 [Clostridium symbiosum WAL-14163] gi|323692097|ref|ZP_08106344.1| 4Fe-4S ferredoxin [Clostridium symbiosum WAL-14673] gi|323402457|gb|EGA94786.1| hypothetical protein HMPREF9474_01335 [Clostridium symbiosum WAL-14163] gi|323503897|gb|EGB19712.1| 4Fe-4S ferredoxin [Clostridium symbiosum WAL-14673] Length = 368 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 11/63 (17%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++CI C C+ C AI+I I KC CG C CPVDA+ Sbjct: 195 DKCIGCGACKRNCAHDAISIAEKKAS-----------IAPDKCAGCGRCIGVCPVDAVAN 243 Query: 121 GPN 123 + Sbjct: 244 HCD 246 >gi|238923605|ref|YP_002937121.1| Fe-hydrogenase large subunit family protein [Eubacterium rectale ATCC 33656] gi|238875280|gb|ACR74987.1| Fe-hydrogenase large subunit family protein [Eubacterium rectale ATCC 33656] Length = 530 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 6/66 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQEA 112 +E+CI C C ++C AI ++ P + +ID KC+ CG C Sbjct: 173 DQEKCIKCGRCASVCSYNAIIVQERPCAKACGMDAISSDENGKANIDYDKCVSCGQCLVN 232 Query: 113 CPVDAI 118 CP AI Sbjct: 233 CPFGAI 238 Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 20/63 (31%), Gaps = 7/63 (11%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-------IDMIKCIYCGLCQEACPV 115 C AC + P + V D ID KCI CG C C Sbjct: 130 CNACPEKRVHVTDGCQGCLAHPCMEVCPKDAVSLDRTTGKSVIDQEKCIKCGRCASVCSY 189 Query: 116 DAI 118 +AI Sbjct: 190 NAI 192 >gi|42779733|ref|NP_976980.1| molybdopterin oxidoreductase family protein [Bacillus cereus ATCC 10987] gi|42735650|gb|AAS39588.1| molybdopterin oxidoreductase family protein [Bacillus cereus ATCC 10987] Length = 978 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + R + Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 + I+ C+ CG C CP +A++E Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211 Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|319652053|ref|ZP_08006173.1| YjgC protein [Bacillus sp. 2_A_57_CT2] gi|317396201|gb|EFV76919.1| YjgC protein [Bacillus sp. 2_A_57_CT2] Length = 988 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 12/87 (13%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P+EK + P +R ++CI C C C +T R + Sbjct: 134 PYEKDESHPFYR---------YDPDQCILCGRCVEACQDVQVTETLTIDWERERPRVIWD 184 Query: 97 D---IDMIKCIYCGLCQEACPVDAIVE 120 + I+ C+ CG C CP +A++E Sbjct: 185 NDVPINESSCVSCGHCSTVCPCNAMME 211 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 9/66 (13%) Query: 57 PNGEERCIAC----KLCEAICPAQAITIES-----GPRCHDGTRRTVRYDIDMIKCIYCG 107 N E C C CE +A+ I + ++ Y D +CI CG Sbjct: 96 FNHELYCTVCDYNNGGCEIHNTVKAMKINHQSIPFDQKPYEKDESHPFYRYDPDQCILCG 155 Query: 108 LCQEAC 113 C EAC Sbjct: 156 RCVEAC 161 >gi|311108198|ref|YP_003981051.1| benzoyl-CoA oxygenase/reductase BoxA [Achromobacter xylosoxidans A8] gi|310762887|gb|ADP18336.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Achromobacter xylosoxidans A8] Length = 412 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 11/68 (16%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 L+++ E CI C CE CP +AIT +S Y +D C C C Sbjct: 8 EVLKQHLIDPEICIRCNTCEETCPIKAITHDSN-----------NYVVDPEICNGCMACV 56 Query: 111 EACPVDAI 118 CP AI Sbjct: 57 PPCPTGAI 64 Score = 35.1 bits (79), Expect = 3.3, Method: Composition-based stats. Identities = 12/26 (46%), Positives = 14/26 (53%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPN 123 ID CI C C+E CP+ AI N Sbjct: 15 IDPEICIRCNTCEETCPIKAITHDSN 40 >gi|310777929|ref|YP_003966262.1| dihydroorotate dehydrogenase family protein [Ilyobacter polytropus DSM 2926] gi|309747252|gb|ADO81914.1| dihydroorotate dehydrogenase family protein [Ilyobacter polytropus DSM 2926] Length = 366 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 10/61 (16%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E+CI C +C +CP AI I ID KC CG+C CP DA+ Sbjct: 315 EKCIGCGICADLCPYHAIHINENKLAV----------IDADKCFGCGVCVSKCPKDAMTI 364 Query: 121 G 121 Sbjct: 365 S 365 Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats. Identities = 11/23 (47%), Positives = 13/23 (56%) Query: 101 IKCIYCGLCQEACPVDAIVEGPN 123 KCI CG+C + CP AI N Sbjct: 315 EKCIGCGICADLCPYHAIHINEN 337 >gi|261856372|ref|YP_003263655.1| electron transport complex, RnfABCDGE type, C subunit [Halothiobacillus neapolitanus c2] gi|261836841|gb|ACX96608.1| electron transport complex, RnfABCDGE type, C subunit [Halothiobacillus neapolitanus c2] Length = 567 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 36/112 (32%), Gaps = 16/112 (14%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + CI C LC CPA + + + + + CI CG+C CP + Sbjct: 375 PQPCIRCSLCAEACPAD-LLPQQLYWYARAKQFDRVVEYHLFDCIECGVCSAVCPSH-LP 432 Query: 120 EGPNFEFATET--------------RQELYYDKERLLNNGDRWESEIVRNIV 157 + +A R+ + ERL E+ + + Sbjct: 433 LVDYYRYAKTEVWAREREKSKASQARERFEFRNERLERIKAEREAALNKKRQ 484 >gi|15602251|ref|NP_245323.1| electron transport complex protein RnfB [Pasteurella multocida subsp. multocida str. Pm70] gi|17368782|sp|Q9CNP1|RNFB_PASMU RecName: Full=Electron transport complex protein rnfB gi|12720633|gb|AAK02470.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 198 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 25/79 (31%), Gaps = 10/79 (12%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 + G+ A E+ CI C C CP AI + + I Sbjct: 94 PPTTDIEGDPAPMVAFIDEDMCIGCTKCIQACPVDAIIGTNK----------AMHTIIPD 143 Query: 102 KCIYCGLCQEACPVDAIVE 120 C C LC CP D I Sbjct: 144 LCTGCELCVPPCPTDCISM 162 Score = 38.5 bits (88), Expect = 0.28, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 30/78 (38%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 P + + +CI + A+ + +E +G + ID CI Sbjct: 57 PGCKPYAEAIANGDDITKCIPGGQTVIVNIAELMGVEPPTTDIEGDPAPMVAFIDEDMCI 116 Query: 105 YCGLCQEACPVDAIVEGP 122 C C +ACPVDAI+ Sbjct: 117 GCTKCIQACPVDAIIGTN 134 >gi|67643798|ref|ZP_00442541.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia mallei GB8 horse 4] gi|121599061|ref|YP_992363.1| ferredoxin [Burkholderia mallei SAVP1] gi|124385577|ref|YP_001026832.1| ferredoxin [Burkholderia mallei NCTC 10229] gi|126451277|ref|YP_001079881.1| ferredoxin [Burkholderia mallei NCTC 10247] gi|126453295|ref|YP_001065463.1| ferredoxin [Burkholderia pseudomallei 1106a] gi|166999900|ref|ZP_02265729.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia mallei PRL-20] gi|242316966|ref|ZP_04815982.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia pseudomallei 1106b] gi|254175604|ref|ZP_04882264.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia mallei ATCC 10399] gi|254207541|ref|ZP_04913891.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia mallei JHU] gi|254258562|ref|ZP_04949616.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia pseudomallei 1710a] gi|254359954|ref|ZP_04976224.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia mallei 2002721280] gi|121227871|gb|ABM50389.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia mallei SAVP1] gi|124293597|gb|ABN02866.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia mallei NCTC 10229] gi|126226937|gb|ABN90477.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia pseudomallei 1106a] gi|126244147|gb|ABO07240.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia mallei NCTC 10247] gi|147751435|gb|EDK58502.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia mallei JHU] gi|148029194|gb|EDK87099.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia mallei 2002721280] gi|160696648|gb|EDP86618.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia mallei ATCC 10399] gi|238525236|gb|EEP88664.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia mallei GB8 horse 4] gi|242140205|gb|EES26607.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia pseudomallei 1106b] gi|243064025|gb|EES46211.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia mallei PRL-20] gi|254217251|gb|EET06635.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia pseudomallei 1710a] Length = 290 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 26/81 (32%), Gaps = 10/81 (12%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 + E A E+ CI C LC CP AI + I Sbjct: 66 PLNQAHGVERARPVAFIDEQLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVAE 115 Query: 102 KCIYCGLCQEACPVDAIVEGP 122 C C LC CPVD I P Sbjct: 116 LCTGCDLCVPPCPVDCIAMIP 136 >gi|330446984|ref|ZP_08310635.1| sulfite reductase, subunit C [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491175|dbj|GAA05132.1| sulfite reductase, subunit C [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 333 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 28/87 (32%), Gaps = 8/87 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + + G + + ERCI C C C A+ S Sbjct: 153 CPNDCAKANMADFGILGIAKINFTPERCIGCGACVRACQHHAVNCLSLKNGKAVK----- 207 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGP 122 + KCI CG C ACP A P Sbjct: 208 ---EESKCIGCGECVLACPTLAWQRDP 231 Score = 35.1 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 16/54 (29%), Gaps = 1/54 (1%) Query: 68 LCEAICPAQAITIESGPRC-HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 I A + G + + +CI CG C AC A+ Sbjct: 144 YHLKIVAAGCPNDCAKANMADFGILGIAKINFTPERCIGCGACVRACQHHAVNC 197 >gi|315657652|ref|ZP_07910534.1| pyridine nucleotide-disulfide oxidoreductase [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492124|gb|EFU81733.1| pyridine nucleotide-disulfide oxidoreductase [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 557 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 10/62 (16%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C C +CP AIT R +Y C CG+C E CP AI Sbjct: 504 NCFGCDNCFGVCPDNAITKI----------RPTQYVFKYDYCKGCGICSEECPCGAISMV 553 Query: 122 PN 123 P Sbjct: 554 PE 555 >gi|315654422|ref|ZP_07907330.1| pyridine nucleotide-disulfide oxidoreductase [Mobiluncus curtisii ATCC 51333] gi|315491457|gb|EFU81074.1| pyridine nucleotide-disulfide oxidoreductase [Mobiluncus curtisii ATCC 51333] Length = 557 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 10/62 (16%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C C +CP AIT R +Y C CG+C E CP AI Sbjct: 504 NCFGCDNCFGVCPDNAITKI----------RPTQYVFKYDYCKGCGICSEECPCGAISMV 553 Query: 122 PN 123 P Sbjct: 554 PE 555 >gi|304390449|ref|ZP_07372402.1| pyridine nucleotide-disulfide oxidoreductase [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326205|gb|EFL93450.1| pyridine nucleotide-disulfide oxidoreductase [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 557 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 10/62 (16%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C C +CP AIT R +Y C CG+C E CP AI Sbjct: 504 NCFGCDNCFGVCPDNAITKI----------RPTQYVFKYDYCKGCGICSEECPCGAISMV 553 Query: 122 PN 123 P Sbjct: 554 PE 555 >gi|307594654|ref|YP_003900971.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Vulcanisaeta distributa DSM 14429] gi|307549855|gb|ADN49920.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Vulcanisaeta distributa DSM 14429] Length = 366 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 31/91 (34%), Gaps = 13/91 (14%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P ++ G R ++CI C LC CP + + Sbjct: 248 PNQRNPYFTG--GTAKHYRPVVNFDKCIKCSLCWEYCPDSVFDVTPDG----------YF 295 Query: 97 DIDMIKCIYCGLCQEACPVD-AIVEGPNFEF 126 + + C CG+C E CPV I+ EF Sbjct: 296 NPVLAYCKGCGVCAEVCPVPDTIIMVDEMEF 326 >gi|304439876|ref|ZP_07399770.1| periplasmic hydrogenase 1 [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371615|gb|EFM25227.1| periplasmic hydrogenase 1 [Peptoniphilus duerdenii ATCC BAA-1640] Length = 501 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 6/66 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPR------CHDGTRRTVRYDIDMIKCIYCGLCQEA 112 ++C+ C C+ CP AI P G+ R +ID KC+ CG C Sbjct: 146 DHDKCVKCGRCKDTCPYHAIVDFDRPCSAACGVGAIGSDEYNRAEIDQDKCVACGRCISE 205 Query: 113 CPVDAI 118 CP AI Sbjct: 206 CPFGAI 211 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 13/60 (21%) Query: 61 ERCIACK--LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C C +CP A+ I R +ID KC+ CG C++ CP AI Sbjct: 117 DNCRRCMAHPCTNVCPVNAVKIGKH-----------RAEIDHDKCVKCGRCKDTCPYHAI 165 >gi|295675947|ref|YP_003604471.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia sp. CCGE1002] gi|295435790|gb|ADG14960.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia sp. CCGE1002] Length = 301 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 23/64 (35%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ CI C LC CP AI + + C C LC CPVD I Sbjct: 83 DEQVCIGCTLCMQACPVDAIVGAPKQ----------MHTVIAELCTGCDLCVPPCPVDCI 132 Query: 119 VEGP 122 P Sbjct: 133 AMLP 136 Score = 37.4 bits (85), Expect = 0.62, Method: Composition-based stats. Identities = 14/21 (66%), Positives = 15/21 (71%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C LC +ACPVDAI Sbjct: 82 IDEQVCIGCTLCMQACPVDAI 102 >gi|220931057|ref|YP_002507965.1| hydrogenase large subunit domain protein [Halothermothrix orenii H 168] gi|219992367|gb|ACL68970.1| hydrogenase large subunit domain protein [Halothermothrix orenii H 168] Length = 491 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 6/65 (9%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY------DIDMIKCIYCGLCQEAC 113 E+C+ C LC CP AI P + V +ID CI CG C EAC Sbjct: 148 REKCVECGLCVKACPYGAILEVERPCTSACSLDAVVPGEKSTAEIDDNNCIECGSCIEAC 207 Query: 114 PVDAI 118 P AI Sbjct: 208 PFGAI 212 Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 13/60 (21%) Query: 61 ERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C C CP AITI + + KC+ CGLC +ACP AI Sbjct: 118 NACRNCVAHHCVNSCPRGAITIVNNQAY-----------VIREKCVECGLCVKACPYGAI 166 >gi|328952561|ref|YP_004369895.1| fumarate reductase/succinate dehydrogenase flavoprotein domain protein [Desulfobacca acetoxidans DSM 11109] gi|328452885|gb|AEB08714.1| fumarate reductase/succinate dehydrogenase flavoprotein domain protein [Desulfobacca acetoxidans DSM 11109] Length = 1042 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 26/64 (40%), Gaps = 6/64 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C LCEA CP AI + P + R + C CG+C ACP AI Sbjct: 965 DAYLCIGCGLCEASCPFAAIRLIQVP------GKGYRAENITASCKGCGVCAAACPQRAI 1018 Query: 119 VEGP 122 Sbjct: 1019 DMIH 1022 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 32/95 (33%), Gaps = 18/95 (18%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT-------IESGPRCHDGTRRTVRY 96 F R +RCIAC +C CP +A ++Y Sbjct: 105 PGHFTVTVRQRPRYIDMDRCIACGVCAEKCPYKAADEFNEGLNQRKAAYVKYPQAVPLKY 164 Query: 97 DIDMIKCIY-----------CGLCQEACPVDAIVE 120 ID +CIY CG C++ CP A+ Sbjct: 165 AIDPDRCIYFKPDKKGKIGRCGACEKFCPAGAVNF 199 Score = 42.0 bits (97), Expect = 0.030, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 25/73 (34%), Gaps = 9/73 (12%) Query: 54 RRYPNGEERCI------ACKLC---EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 N CI C + A +E P T R IDM +CI Sbjct: 66 TFPTNDCSMCILSPKLVECGRHLNIHLLTLADVTALEGEPGHFTVTVRQRPRYIDMDRCI 125 Query: 105 YCGLCQEACPVDA 117 CG+C E CP A Sbjct: 126 ACGVCAEKCPYKA 138 >gi|288962204|ref|YP_003452499.1| dihydropyrimidine dehydrogenase (NADP+) [Azospirillum sp. B510] gi|288914470|dbj|BAI75955.1| dihydropyrimidine dehydrogenase (NADP+) [Azospirillum sp. B510] Length = 427 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 5/66 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117 CI C C +C T R G R + + +C+ C LC CPV Sbjct: 342 DPALCIDCGRCHVVCED---TSHQAIRIDQGEGR-RVFTVVDEECVGCNLCSHVCPVPDC 397 Query: 118 IVEGPN 123 I P Sbjct: 398 ITMVPE 403 >gi|298345847|ref|YP_003718534.1| glutamate synthase (NADPH) small subunit [Mobiluncus curtisii ATCC 43063] gi|298235908|gb|ADI67040.1| glutamate synthase (NADPH) small subunit [Mobiluncus curtisii ATCC 43063] Length = 557 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 10/62 (16%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C C +CP AIT R +Y C CG+C E CP AI Sbjct: 504 NCFGCDNCFGVCPDNAITKI----------RPTQYVFKYDYCKGCGICSEECPCGAISMV 553 Query: 122 PN 123 P Sbjct: 554 PE 555 >gi|222094341|ref|YP_002528400.1| formate dehydrogenase, alpha subunit, anaerobic [Bacillus cereus Q1] gi|221238398|gb|ACM11108.1| formate dehydrogenase, alpha subunit, anaerobic [Bacillus cereus Q1] Length = 978 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + R + Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 I+ C+ CG C CP +A++E Sbjct: 183 WDHGVSINDSSCVSCGQCVTVCPCNALME 211 Score = 39.3 bits (90), Expect = 0.16, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|24113018|ref|NP_707528.1| electron transport complex protein RnfB [Shigella flexneri 2a str. 301] gi|30063143|ref|NP_837314.1| electron transport complex protein RnfB [Shigella flexneri 2a str. 2457T] gi|82544004|ref|YP_407951.1| electron transport complex protein RnfB [Shigella boydii Sb227] gi|81723373|sp|Q83KY6|RNFB_SHIFL RecName: Full=Electron transport complex protein rnfB gi|123769444|sp|Q320Y5|RNFB_SHIBS RecName: Full=Electron transport complex protein rnfB gi|24051982|gb|AAN43235.1| orf, conserved hypothetical protein [Shigella flexneri 2a str. 301] gi|30041392|gb|AAP17121.1| hypothetical protein S1785 [Shigella flexneri 2a str. 2457T] gi|81245415|gb|ABB66123.1| conserved hypothetical protein [Shigella boydii Sb227] gi|281601062|gb|ADA74046.1| Electron transport complex protein rnfB [Shigella flexneri 2002017] gi|313648903|gb|EFS13340.1| electron transport complex, RnfABCDGE type, B subunit [Shigella flexneri 2a str. 2457T] gi|332757135|gb|EGJ87475.1| electron transport complex, RnfABCDGE type, B subunit [Shigella flexneri 4343-70] gi|332758097|gb|EGJ88422.1| electron transport complex, RnfABCDGE type, B subunit [Shigella flexneri 2747-71] gi|332758458|gb|EGJ88779.1| electron transport complex, RnfABCDGE type, B subunit [Shigella flexneri K-671] gi|332767029|gb|EGJ97228.1| electron transport complex, RnfABCDGE type, B subunit [Shigella flexneri 2930-71] gi|333003892|gb|EGK23427.1| electron transport complex, RnfABCDGE type, B subunit [Shigella flexneri K-218] gi|333017979|gb|EGK37284.1| electron transport complex, RnfABCDGE type, B subunit [Shigella flexneri K-304] Length = 192 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 26/76 (34%), Gaps = 10/76 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI + V + + C C LC + CP I Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RVMHTVMSDLCTGCNLCVDPCPTHCI 162 Query: 119 VEGPNFEFATETRQEL 134 P E + +L Sbjct: 163 SLQPVAETPDSWKWDL 178 Score = 35.5 bits (80), Expect = 2.6, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C C +ACPVDAI Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132 >gi|89092706|ref|ZP_01165659.1| electron transport complex protein RnfB [Oceanospirillum sp. MED92] gi|89083218|gb|EAR62437.1| electron transport complex protein RnfB [Oceanospirillum sp. MED92] Length = 198 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 28/85 (32%), Gaps = 10/85 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E E + E+ CI C C CP AI + + + Sbjct: 91 EAIPLEGGVEEEPVKKVAYIREDECIGCTKCIQACPVDAILGAAKQ----------MHTV 140 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPN 123 +C C LC E CPVD I P Sbjct: 141 IETECTGCDLCVEPCPVDCIDMLPI 165 >gi|221199573|ref|ZP_03572617.1| electron transport complex, rnfaBcdge type, b subunit [Burkholderia multivorans CGD2M] gi|221205527|ref|ZP_03578542.1| electron transport complex, rnfaBcdge type, b subunit [Burkholderia multivorans CGD2] gi|221174365|gb|EEE06797.1| electron transport complex, rnfaBcdge type, b subunit [Burkholderia multivorans CGD2] gi|221180858|gb|EEE13261.1| electron transport complex, rnfaBcdge type, b subunit [Burkholderia multivorans CGD2M] Length = 288 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 22/66 (33%), Gaps = 10/66 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C LC CP AI + I C C LC CPVD Sbjct: 81 FIDENLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVASLCTGCDLCVPPCPVD 130 Query: 117 AIVEGP 122 I P Sbjct: 131 CIAMVP 136 >gi|26250358|ref|NP_756398.1| putative pyruvate formate-lyase 3 activating enzyme [Escherichia coli CFT073] gi|26110788|gb|AAN82972.1|AE016769_87 Putative pyruvate formate-lyase 3 activating enzyme [Escherichia coli CFT073] Length = 305 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 28/77 (36%), Gaps = 15/77 (19%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103 R L N CI C C CP QA++ + + I+ +C Sbjct: 45 PESQRHSPELLFKKND---CIRCGKCIDACPQQALSTTNA------------WFINRDRC 89 Query: 104 IYCGLCQEACPVDAIVE 120 I CG C E CP A+ Sbjct: 90 IQCGKCTEICPTRALEM 106 >gi|254242172|ref|ZP_04935494.1| hypothetical protein PA2G_02903 [Pseudomonas aeruginosa 2192] gi|126195550|gb|EAZ59613.1| hypothetical protein PA2G_02903 [Pseudomonas aeruginosa 2192] Length = 774 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 10/97 (10%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 CI C C +CP + + G ++ CI CG C CP +I Sbjct: 368 PCIRCGDCAQVCPVS-LLPQQLHFFALGDEHEQLLAHNLFDCIECGACAYVCP-SSIPLV 425 Query: 122 PNFEFAT-ETRQELYYDKERLL---NNGDRWESEIVR 154 + + E R++ +++LL + +R+E R Sbjct: 426 QYYRASKAEIREQ----RQKLLKAEQSRERFEQRQAR 458 Score = 37.0 bits (84), Expect = 0.99, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 17/54 (31%) Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNI 156 CI CG C + CPV + + +F GD E + N+ Sbjct: 369 CIRCGDCAQVCPVSLLPQQLHF-----------------FALGDEHEQLLAHNL 405 >gi|320538846|ref|ZP_08038522.1| putative iron-sulfur protein [Serratia symbiotica str. Tucson] gi|320031006|gb|EFW13009.1| putative iron-sulfur protein [Serratia symbiotica str. Tucson] Length = 190 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 25/85 (29%), Gaps = 10/85 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E E + E CI C C CP AI +G + + Sbjct: 91 EPQPLGSEIAAEPVRQVAYIDEANCIGCTKCIQACPVDAIVGATG----------AMHTV 140 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPN 123 C C LC CP D I P Sbjct: 141 IADLCTGCDLCVAPCPTDCIEMRPI 165 >gi|291528206|emb|CBK93792.1| Iron only hydrogenase large subunit, C-terminal domain [Eubacterium rectale M104/1] Length = 507 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 6/66 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQEA 112 +E+CI C C ++C AI ++ P + +ID KC+ CG C Sbjct: 150 DQEKCIKCGRCASVCSYNAIIVQERPCAKACGMDAISSDENGKANIDYDKCVSCGQCLVN 209 Query: 113 CPVDAI 118 CP AI Sbjct: 210 CPFGAI 215 Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 20/63 (31%), Gaps = 7/63 (11%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-------IDMIKCIYCGLCQEACPV 115 C AC + P + V D ID KCI CG C C Sbjct: 107 CNACPEKRVHVTDGCQGCLAHPCMEVCPKDAVSLDRTTGKSVIDQEKCIKCGRCASVCSY 166 Query: 116 DAI 118 +AI Sbjct: 167 NAI 169 >gi|291525181|emb|CBK90768.1| Iron only hydrogenase large subunit, C-terminal domain [Eubacterium rectale DSM 17629] Length = 507 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 6/66 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQEA 112 +E+CI C C ++C AI ++ P + +ID KC+ CG C Sbjct: 150 DQEKCIKCGRCASVCSYNAIIVQERPCAKACGMDAISSDENGKANIDYDKCVSCGQCLVN 209 Query: 113 CPVDAI 118 CP AI Sbjct: 210 CPFGAI 215 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 11/58 (18%) Query: 63 CIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C C +CP AI+++ R T + ID KCI CG C C +AI Sbjct: 121 CQGCLAHPCMEVCPKDAISLD---------RTTGKSVIDQEKCIKCGRCASVCSYNAI 169 >gi|237748027|ref|ZP_04578507.1| rnfC protein [Oxalobacter formigenes OXCC13] gi|229379389|gb|EEO29480.1| rnfC protein [Oxalobacter formigenes OXCC13] Length = 426 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 32/91 (35%), Gaps = 1/91 (1%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 + G R E CI C C CP + + ++ G ++ D+ Sbjct: 333 PVTKGTNGVLVFERQTVDRENCIGCGRCIDACPMRLMPLKYAEGWRLGNLVMMK-RHDLN 391 Query: 102 KCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 C+ CG C+ CP + + F R+ Sbjct: 392 LCVECGACESVCPSNVPLMASIFSGKARLRE 422 >gi|217979112|ref|YP_002363259.1| putative glutamate synthase (NADPH) small subunit [Methylocella silvestris BL2] gi|217504488|gb|ACK51897.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methylocella silvestris BL2] Length = 552 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 23/67 (34%), Gaps = 3/67 (4%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 RC++C C A E +RY D +C C +C E CP Sbjct: 479 RYEARRCLSCGNCFECDQCYAACPEQAIVKLGPG---LRYRYDFDRCTGCAVCYEQCPCH 535 Query: 117 AIVEGPN 123 AI P Sbjct: 536 AIEMIPE 542 >gi|192362376|ref|YP_001981502.1| electron transport complex protein RnfC [Cellvibrio japonicus Ueda107] gi|190688541|gb|ACE86219.1| Electron transport complex protein RnfC [Cellvibrio japonicus Ueda107] Length = 786 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 6/96 (6%) Query: 61 ERCIACKLCEAICPAQAITIE--SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI C LC CP + + + D R ++ CI CG C CP +I Sbjct: 379 QACIRCGLCAEACPVDLLPQQLFWYAQAEDFERLESH---NLFDCIECGACAYVCP-SSI 434 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESEIVR 154 + A + +KE+ + R+E R Sbjct: 435 PLVQYYRAAKGSIHLQELEKEKSDRSRQRFEFRKAR 470 >gi|183983396|ref|YP_001851687.1| NADH-dependent glutamate synthase (small subunit) GltD [Mycobacterium marinum M] gi|183176722|gb|ACC41832.1| NADH-dependent glutamate synthase (small subunit) GltD [Mycobacterium marinum M] Length = 561 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 30/86 (34%), Gaps = 5/86 (5%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTV 94 P ++ S G + RC++C C A ++ + G R Sbjct: 475 SPEDRISGFDEVMGGLSAEAATFEAGRCLSCGNCFECDGCLGACPEDAVIKLGRGHRYRF 534 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVE 120 YD +C C C + CPV AI Sbjct: 535 DYD----RCTGCATCYDQCPVHAIEM 556 >gi|89092705|ref|ZP_01165658.1| electron transport complex protein RnfC [Oceanospirillum sp. MED92] gi|89083217|gb|EAR62436.1| electron transport complex protein RnfC [Oceanospirillum sp. MED92] Length = 1047 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 3/74 (4%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 CI C +CE +CPA+ + + G ++ CI CG C CP I Sbjct: 369 NPCIRCGMCEQVCPAE-LLPQQLHWFAKGKEFEKAKHHNLFDCIECGACSYVCP-SNIPL 426 Query: 121 GPNFEFA-TETRQE 133 + FA +E R E Sbjct: 427 VQYYRFAKSEIRAE 440 >gi|304383331|ref|ZP_07365797.1| pyruvate:ferredoxin oxidoreductase [Prevotella marshii DSM 16973] gi|304335499|gb|EFM01763.1| pyruvate:ferredoxin oxidoreductase [Prevotella marshii DSM 16973] Length = 1190 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 49/144 (34%), Gaps = 31/144 (21%) Query: 28 FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH 87 F T++ ++ G+ + RG A + CI C C +CP I Sbjct: 657 FVKYGTVDGTWQTGTAAYEKRGVEAFAPEWM-ADNCIQCNKCSYVCPHACIRPFVLDEEE 715 Query: 88 DGTRR---------------TVRYDIDMIKCIYCGLCQEACPVD----AIVEGPNFEFAT 128 G + R + ++ C+ CG C + CP + A+ P FA Sbjct: 716 YGKFKGETLEMKAPKQLKGMHFRIQVSVMDCVGCGNCADVCPGNKNGKALEMKP---FAG 772 Query: 129 ETRQELYYD--------KERLLNN 144 + +D K+ L++ Sbjct: 773 YNEEADRWDYLIKNVKSKQDLVDI 796 >gi|297156136|gb|ADI05848.1| NADH dehydrogenase I chain G [Streptomyces bingchenggensis BCW-1] Length = 286 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 4/75 (5%) Query: 56 YPNGEERCIACKLCEAIC--PAQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQE 111 Y ++CI C C C Q + R + D + C+YCG C E Sbjct: 145 YVRDYDKCILCYKCVDACGEQWQNTFAIAVAGRGFDARISTEQDAPLTDSACVYCGNCIE 204 Query: 112 ACPVDAIVEGPNFEF 126 CP A+ F+ Sbjct: 205 VCPTGALSFKSEFDM 219 >gi|217419601|ref|ZP_03451107.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia pseudomallei 576] gi|217396905|gb|EEC36921.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia pseudomallei 576] Length = 290 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 26/81 (32%), Gaps = 10/81 (12%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 + E A E+ CI C LC CP AI + I Sbjct: 66 PLNQAHGVERARPVAFIDEQLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVAE 115 Query: 102 KCIYCGLCQEACPVDAIVEGP 122 C C LC CPVD I P Sbjct: 116 LCTGCDLCVPPCPVDCIAMIP 136 >gi|150021055|ref|YP_001306409.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429] gi|149793576|gb|ABR31024.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429] Length = 602 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 10/66 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L Y E+C+ C C +CPA I+ E ++ID C+ CG C E Sbjct: 539 LISYVIDPEKCVGCTACARVCPASCISGE----------VRKVHEIDQSACVKCGSCIEV 588 Query: 113 CPVDAI 118 C AI Sbjct: 589 CRFGAI 594 Score = 40.9 bits (94), Expect = 0.069, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 16/40 (40%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ G + + Y ID KC+ C C CP I Sbjct: 525 HVKEGKCPAKKCKDLISYVIDPEKCVGCTACARVCPASCI 564 >gi|11498837|ref|NP_070066.1| heterodisulfide reductase, subunit A/methylviologen reducing hydrogenase, subunit delta [Archaeoglobus fulgidus DSM 4304] gi|2649346|gb|AAB90008.1| heterodisulfide reductase, subunit A/methylviologen reducing hydrogenase, subunit delta [Archaeoglobus fulgidus DSM 4304] Length = 769 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 12/65 (18%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 EE+CI C++CE +C A+T++ + I+ C CG+C ACP D Sbjct: 570 YVDEEKCIGCRICEKVCEFNAVTVDRKAK------------INPNACAMCGICVAACPAD 617 Query: 117 AIVEG 121 AI G Sbjct: 618 AIDMG 622 Score = 35.1 bits (79), Expect = 3.0, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 27/88 (30%), Gaps = 8/88 (9%) Query: 46 RFRGEHALRRYPNGEERCIAC-KLCEAICPAQAITIESGPRCHDGTRRTVRYD------- 97 FR + E +C C C ++CP + Sbjct: 226 NFRIKVIKHPRYVDESKCKGCIDDCSSVCPVEIPNEFDYGIGVRKAIYIPIPQSTPLYAA 285 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFE 125 ID CI C LC++AC A+ E Sbjct: 286 IDWEHCIGCRLCEKACQPKAVDFSQQPE 313 >gi|24374054|ref|NP_718097.1| electron transport complex protein RnfC [Shewanella oneidensis MR-1] gi|24348529|gb|AAN55541.1|AE015693_3 iron-sulfur cluster-binding protein [Shewanella oneidensis MR-1] Length = 790 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 43/126 (34%), Gaps = 11/126 (8%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 TI P KG+ + P + CI C C A P+ + Sbjct: 350 TIQVPILKGTNCILVPSSQEIGTTPEE-KACIRCGECA-----NACPALLLPQQLFWHAK 403 Query: 93 TVRYD----IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRW 148 YD ++ CI CG C CP I + A ++ +K++ R+ Sbjct: 404 AEEYDKAASYNLKDCIECGCCSYVCP-SDIPLVEYYRIAKSALKQTADEKQQAERAKLRF 462 Query: 149 ESEIVR 154 E+ + R Sbjct: 463 EARLQR 468 >gi|53718739|ref|YP_107725.1| ferredoxin [Burkholderia pseudomallei K96243] gi|134281040|ref|ZP_01767749.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia pseudomallei 305] gi|237811474|ref|YP_002895925.1| electron transport complex, rnfaBcdge type, b subunit [Burkholderia pseudomallei MSHR346] gi|52209153|emb|CAH35097.1| putative electron transport-related protein [Burkholderia pseudomallei K96243] gi|134247346|gb|EBA47431.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia pseudomallei 305] gi|237505183|gb|ACQ97501.1| electron transport complex, rnfaBcdge type, b subunit [Burkholderia pseudomallei MSHR346] Length = 290 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 26/81 (32%), Gaps = 10/81 (12%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 + E A E+ CI C LC CP AI + I Sbjct: 66 PLNQAHGVERARPVAFIDEQLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVAE 115 Query: 102 KCIYCGLCQEACPVDAIVEGP 122 C C LC CPVD I P Sbjct: 116 LCTGCDLCVPPCPVDCIAMIP 136 >gi|254298437|ref|ZP_04965889.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia pseudomallei 406e] gi|157808125|gb|EDO85295.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia pseudomallei 406e] Length = 281 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 26/81 (32%), Gaps = 10/81 (12%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 + E A E+ CI C LC CP AI + I Sbjct: 66 PLNQAHGVERARPVAFIDEQLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVAE 115 Query: 102 KCIYCGLCQEACPVDAIVEGP 122 C C LC CPVD I P Sbjct: 116 LCTGCDLCVPPCPVDCIAMIP 136 >gi|327400962|ref|YP_004341801.1| methyl-viologen-reducing hydrogenase subunit delta [Archaeoglobus veneficus SNP6] gi|327316470|gb|AEA47086.1| methyl-viologen-reducing hydrogenase delta subunit [Archaeoglobus veneficus SNP6] Length = 753 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 9/61 (14%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E CI C+LC +C A+ I+ R+ + ID C CG C ACPVDAI Sbjct: 556 ENCIGCRLCAEVCRFNAVVIDE---------RSGKAKIDANACAMCGACVAACPVDAIDM 606 Query: 121 G 121 G Sbjct: 607 G 607 Score = 35.5 bits (80), Expect = 2.9, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 22/79 (27%), Gaps = 7/79 (8%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-------IDMI 101 G LR + CK C C + ID Sbjct: 222 GNFKLRIVKHPRYVNENCKGCIEDCSSVCPVDVFDGVGIRKAVYIPFPQATPLYAAIDWE 281 Query: 102 KCIYCGLCQEACPVDAIVE 120 CI C LC +AC +AI Sbjct: 282 NCIRCELCVKACKPNAIDF 300 >gi|312880859|ref|ZP_07740659.1| Cobyrinic acid ac-diamide synthase [Aminomonas paucivorans DSM 12260] gi|310784150|gb|EFQ24548.1| Cobyrinic acid ac-diamide synthase [Aminomonas paucivorans DSM 12260] Length = 291 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 34/99 (34%), Gaps = 24/99 (24%) Query: 24 LRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG 83 LR ++T +PF S + E+RC C C +C A+ E G Sbjct: 44 LRILLDPQSTEEWPFVGKSVAVL------------DEKRCTRCGACRDLCRFDALPWEEG 91 Query: 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 PR +C C LC CP +A P Sbjct: 92 PRVD------------ATRCEGCALCHHVCPQEAFSLVP 118 >gi|269216907|ref|ZP_06160761.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Slackia exigua ATCC 700122] gi|269129714|gb|EEZ60798.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Slackia exigua ATCC 700122] Length = 1275 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 20/116 (17%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ--------------AITIESG 83 FE G+ + RG + C C +C +CP A + Sbjct: 765 FETGAAAYEKRGVAVNVPTWD-ASTCTQCNMCSYVCPHATIRPFLLTDEEADAAPDTVTA 823 Query: 84 PRCHDGTRRTVRYD--IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 G R ++Y + + C+ C +C CP +++ P A ET ++ +D Sbjct: 824 IDAKGGKMRGMKYTLVVSPLDCMGCEVCVHQCPTNSLSMSPI---AVETPKQNAFD 876 >gi|261494021|ref|ZP_05990524.1| electron transport complex protein RnfB [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496220|ref|ZP_05992626.1| electron transport complex protein RnfB [Mannheimia haemolytica serotype A2 str. OVINE] gi|261308172|gb|EEY09469.1| electron transport complex protein RnfB [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310187|gb|EEY11387.1| electron transport complex protein RnfB [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 205 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 25/81 (30%), Gaps = 10/81 (12%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 E ++ E+ CI C C CP AI + + I Sbjct: 96 PPMEGMVEPEMKVAFVIEDLCIGCTKCIQACPVDAIIGTNK----------AMHTIIPDL 145 Query: 103 CIYCGLCQEACPVDAIVEGPN 123 C C LC CP + I P Sbjct: 146 CTGCELCVAPCPTNCIEMRPI 166 >gi|154414441|ref|XP_001580248.1| 4Fe-4S binding domain containing protein [Trichomonas vaginalis G3] gi|121914463|gb|EAY19262.1| 4Fe-4S binding domain containing protein [Trichomonas vaginalis G3] Length = 658 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 10/90 (11%) Query: 31 KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT 90 K ++ E + GE L + CI C C +CP AIT+ Sbjct: 563 KNIRDWAKENANFDIENIGEEPLINHLVNPYTCIGCGRC-TMCPNDAITLIPAK------ 615 Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 Y +D KC CGLC+ CP ++ Sbjct: 616 ---WVYKVDPDKCNGCGLCESVCPTNSCGL 642 >gi|56478215|ref|YP_159804.1| electron transport complex protein RnfB [Aromatoleum aromaticum EbN1] gi|81677376|sp|Q5P1B1|RNFB_AZOSE RecName: Full=Electron transport complex protein rnfB gi|56314258|emb|CAI08903.1| Electron transport complex protein [Aromatoleum aromaticum EbN1] Length = 183 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 28/87 (32%), Gaps = 10/87 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E S E E+ CI C LC CP AI + + + Sbjct: 89 EFKPLSEEHGEEKPKSVARIDEQLCIGCTLCIQACPVDAIVGAAK----------HMHTV 138 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFE 125 C C LC CPVD I P E Sbjct: 139 VPALCTGCELCVAPCPVDCIAMTPLPE 165 >gi|33112419|sp|Q968X7|PNO_CRYPV RecName: Full=Pyruvate dehydrogenase [NADP+]; AltName: Full=CpPNO; AltName: Full=Pyruvate:NADP+ oxidoreductase gi|13897519|gb|AAK48421.1|AF208233_1 pyruvate:ferredoxin oxidoreductase/NADPH-cytochrome P450 reductase [Cryptosporidium parvum] Length = 1934 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 37/111 (33%), Gaps = 22/111 (19%) Query: 27 FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA--------- 77 F+ T+ G+T+ RG A+ +C C C +CP A Sbjct: 688 MFEPTGTVPL----GTTAYEKRG-IAMSIPIVDMNKCTQCNYCSIVCPHAAIRPFLLDEA 742 Query: 78 --------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + I + + R + + C C LC ACP DA+ Sbjct: 743 EFKNAPETMHIPKAKGGQEFSSYYYRIQVTPLDCTGCELCVHACPDDALHM 793 >gi|330949992|gb|EGH50252.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas syringae Cit 7] Length = 291 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 28/75 (37%), Gaps = 10/75 (13%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 RG + E CI C C CP AI S + + + + +C C Sbjct: 76 RGTAPAQVAFIREAECIGCTKCIQACPVDAILGASK----------LMHTVIIDECTGCD 125 Query: 108 LCQEACPVDAIVEGP 122 LC CPVD I P Sbjct: 126 LCVAPCPVDCIEMHP 140 >gi|331001648|ref|ZP_08325171.1| hypothetical protein HMPREF0491_00033 [Lachnospiraceae oral taxon 107 str. F0167] gi|330413369|gb|EGG92736.1| hypothetical protein HMPREF0491_00033 [Lachnospiraceae oral taxon 107 str. F0167] Length = 507 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 29/66 (43%), Gaps = 6/66 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQEA 112 +E+CI C C +C AI +++ P + DID KC+ CG C Sbjct: 150 NQEKCIKCGRCANVCAYNAIIVQTRPCAASCGMDAISSDENGKADIDYDKCVSCGQCLVN 209 Query: 113 CPVDAI 118 CP AI Sbjct: 210 CPFGAI 215 Score = 38.2 bits (87), Expect = 0.40, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 26/89 (29%), Gaps = 9/89 (10%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 T P G R Y + C +CP A+ I+ Sbjct: 90 KAETYYTPPLINIIKFACHGCVEKRVYVTDGCQGCLAHPCSEVCPTGAVKIDKESGFSS- 148 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 I+ KCI CG C C +AI Sbjct: 149 --------INQEKCIKCGRCANVCAYNAI 169 >gi|307729066|ref|YP_003906290.1| electron transport complex, RnfABCDGE type subunit B [Burkholderia sp. CCGE1003] gi|307583601|gb|ADN56999.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia sp. CCGE1003] Length = 321 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 23/64 (35%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ CI C LC CP AI + + C C LC CPVD I Sbjct: 85 DEQICIGCTLCMQACPVDAIVGAPK----------HMHTVVAELCTGCDLCVPPCPVDCI 134 Query: 119 VEGP 122 P Sbjct: 135 SMLP 138 Score = 38.2 bits (87), Expect = 0.38, Method: Composition-based stats. Identities = 16/31 (51%), Positives = 17/31 (54%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 ID CI C LC +ACPVDAIV P Sbjct: 84 IDEQICIGCTLCMQACPVDAIVGAPKHMHTV 114 >gi|317154615|ref|YP_004122663.1| nitroreductase [Desulfovibrio aespoeensis Aspo-2] gi|316944866|gb|ADU63917.1| nitroreductase [Desulfovibrio aespoeensis Aspo-2] Length = 272 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 7/68 (10%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + + E C LC ++CPA I + G ++ CI CG C Sbjct: 1 MTLFTVNAETCARDGLCASVCPAGCIDWQPGELPVPHEKKF-------AYCIGCGHCVAV 53 Query: 113 CPVDAIVE 120 CP A+ Sbjct: 54 CPHGALHL 61 >gi|251778159|ref|ZP_04821079.1| nitroreductase family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082474|gb|EES48364.1| nitroreductase family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 273 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 16/103 (15%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + +E+CI+CK C CP I + G +I CI CG C CP Sbjct: 1 MFEVNKEKCISCKQCINDCPVSDILLIEGKA-----------NIKNESCIKCGHCIAICP 49 Query: 115 VDAIVEGPNF---EFATETRQELYYDKERLLNNGDRWESEIVR 154 A+ ++ E + E + + LL N ++ + + Sbjct: 50 TKAVS-TDDYNMDEVKEYNKSEFSIEADNLL-NFIKFRRSVRK 90 >gi|297587236|ref|ZP_06945881.1| NADH dehydrogenase (quinone) [Finegoldia magna ATCC 53516] gi|297575217|gb|EFH93936.1| NADH dehydrogenase (quinone) [Finegoldia magna ATCC 53516] Length = 626 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 38/96 (39%), Gaps = 16/96 (16%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 L+Y F+ + + +K AL Y ++CI C C CP I E Sbjct: 544 TLKY-FRNEYEAHIYDKKCPAHAC----KALLSYEI-TDKCIGCTKCAKNCPVSCIEGEV 597 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + + ID +CI CG C+ CPV A+ Sbjct: 598 KKQ----------HVIDKSQCIKCGNCETVCPVHAV 623 >gi|258404574|ref|YP_003197316.1| Cobyrinic acid ac-diamide synthase [Desulfohalobium retbaense DSM 5692] gi|257796801|gb|ACV67738.1| Cobyrinic acid ac-diamide synthase [Desulfohalobium retbaense DSM 5692] Length = 285 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 14/64 (21%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++C C +C + C AI+ + I + +C C LC CP AI Sbjct: 64 DPQKCTECGVCASSCRFGAISEDIE--------------IRLEQCEGCALCSYVCPETAI 109 Query: 119 VEGP 122 P Sbjct: 110 SMHP 113 >gi|169351160|ref|ZP_02868098.1| hypothetical protein CLOSPI_01939 [Clostridium spiroforme DSM 1552] gi|169292222|gb|EDS74355.1| hypothetical protein CLOSPI_01939 [Clostridium spiroforme DSM 1552] Length = 770 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 10/87 (11%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + ++C C C ICP Q I+++ + ID KCI+CG CQ C Sbjct: 392 KFNICDYDQCTGCGACSVICPKQCISMKKNDEG------FLYPVIDYHKCIHCGNCQRKC 445 Query: 114 PVDAIVEGPNFEFATETRQELYYDKER 140 PV + N E T +K+ Sbjct: 446 PVKNKYKEDNKEPETYA----CMNKDD 468 >gi|297619238|ref|YP_003707343.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanococcus voltae A3] gi|297378215|gb|ADI36370.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus voltae A3] Length = 343 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 27/80 (33%), Gaps = 5/80 (6%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 +G + + C C +CE ICP I I R I K Sbjct: 242 YPFWKKGLYKFDEKFKISKDCNLCGICEKICPVNNIEIIDNENLEYNDRI-----IFKHK 296 Query: 103 CIYCGLCQEACPVDAIVEGP 122 C C C + CPV AI G Sbjct: 297 CQECLSCIQTCPVRAISYGN 316 Score = 34.7 bits (78), Expect = 4.1, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 17/48 (35%) Query: 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 P G + C CG+C++ CPV+ I N R Sbjct: 243 PFWKKGLYKFDEKFKISKDCNLCGICEKICPVNNIEIIDNENLEYNDR 290 >gi|152995572|ref|YP_001340407.1| electron transport complex protein RnfB [Marinomonas sp. MWYL1] gi|150836496|gb|ABR70472.1| electron transport complex, RnfABCDGE type, B subunit [Marinomonas sp. MWYL1] Length = 198 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 28/82 (34%), Gaps = 10/82 (12%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E E A R E+ CI C C CP AI + + + Sbjct: 91 EAVPLDGDHGTESAKRVAVIREDECIGCTKCIQACPVDAILGAAKQ----------MHTV 140 Query: 99 DMIKCIYCGLCQEACPVDAIVE 120 +C C LC E CPVD I Sbjct: 141 IADECTGCDLCVEPCPVDCIDM 162 >gi|37526279|ref|NP_929623.1| electron transport complex protein RnfB [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785710|emb|CAE14694.1| Electron transport complex protein RnfB [Photorhabdus luminescens subsp. laumondii TTO1] Length = 210 Score = 50.1 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 28/85 (32%), Gaps = 10/85 (11%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 A + EE CI C C CP AI + + I C C LC Sbjct: 104 NPARKVAFIDEENCIGCTKCIQACPVDAIVGAT----------RAMHTIVEDLCTGCDLC 153 Query: 110 QEACPVDAIVEGPNFEFATETRQEL 134 CP D I P + + +L Sbjct: 154 VAPCPTDCITMIPVATTTSNWKWDL 178 >gi|307594911|ref|YP_003901228.1| indolepyruvate ferredoxin oxidoreductase subunit alpha [Vulcanisaeta distributa DSM 14429] gi|307550112|gb|ADN50177.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Vulcanisaeta distributa DSM 14429] Length = 616 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 12/72 (16%) Query: 47 FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 FRG RY + C AC +C + AI + ID C+ C Sbjct: 541 FRGYV--TRYYVDLDACKACGICYNLIACPAIVPLENRKA----------WIDPNMCVGC 588 Query: 107 GLCQEACPVDAI 118 +C + CP +AI Sbjct: 589 SVCAQVCPYNAI 600 >gi|284106851|ref|ZP_06386294.1| NAD-dependent formate dehydrogenase, alpha subunit [Candidatus Poribacteria sp. WGA-A3] gi|283830030|gb|EFC34306.1| NAD-dependent formate dehydrogenase, alpha subunit [Candidatus Poribacteria sp. WGA-A3] Length = 887 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 4/88 (4%) Query: 31 KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT 90 T + K ++ G RC++C C C Sbjct: 124 PTVSRFKELKRVFPKQYLGPVI----ETQMNRCVSCMRCVRYCDEVMDAQALAADGRGTL 179 Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + + + ++C CG C + CPV AI Sbjct: 180 TQITHWAGNELECDMCGGCIQICPVGAI 207 >gi|254563763|ref|YP_003070858.1| NAD-dependent formate dehydrogenase, molybdenum containing subunit alpha [Methylobacterium extorquens DM4] gi|254271041|emb|CAX27048.1| NAD-dependent formate dehydrogenase, molybdenum containing, alpha subunit [Methylobacterium extorquens DM4] Length = 950 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 2/98 (2%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVR 95 K ++ + + + +CI C C C + R D Sbjct: 148 HVKPASDRYLPKDESNPYFTYDPSKCIVCNRCVRACEETQGTFALTIEGRGFDSRVAAGP 207 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 + +C+ CG C +ACP + E ++ E Sbjct: 208 TNFMQSECVSCGACVQACPTATLQEKTIHQYGQPDHSE 245 >gi|229543244|ref|ZP_04432304.1| formate dehydrogenase, alpha subunit [Bacillus coagulans 36D1] gi|229327664|gb|EEN93339.1| formate dehydrogenase, alpha subunit [Bacillus coagulans 36D1] Length = 997 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 32/92 (34%), Gaps = 9/92 (9%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA----QAITIESGPRCHD 88 Y FE P + Y ++CI C C C + +TI+ Sbjct: 123 HQKYQFEAKPYPPD----QSHPFYRYEPDQCILCGRCVEACQDLQVNETLTIDWDREVPR 178 Query: 89 GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ID C+ CG C CP +A++E Sbjct: 179 VIWDNDVP-IDESSCVSCGHCVTVCPCNALME 209 Score = 40.1 bits (92), Expect = 0.12, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 35/101 (34%), Gaps = 13/101 (12%) Query: 26 YFFKAKTTINYP---FEKGSTSPRFRGEHAL-RRYPNGEERCIAC----KLCEAICPAQA 77 +A T P E GS + A+ R N E C C C A+ Sbjct: 59 NLVRACATKVEPGMEVESGSKPVKDAQYEAMSRILKNHELYCTVCDNNNGNCVVHNTAEH 118 Query: 78 ITIESGP-----RCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + IE + + + Y + +CI CG C EAC Sbjct: 119 LEIEHQKYQFEAKPYPPDQSHPFYRYEPDQCILCGRCVEAC 159 >gi|150388601|ref|YP_001318650.1| electron transfer flavoprotein, alpha subunit-like protein [Alkaliphilus metalliredigens QYMF] gi|149948463|gb|ABR46991.1| Electron transfer flavoprotein, alpha subunit-like protein [Alkaliphilus metalliredigens QYMF] Length = 392 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 12/71 (16%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + + E+C C LC C A+ E+ + C CG+C ++ Sbjct: 1 MSQLTINLEKCTGCGLCIKSCATDALHKENNKA------------MVNENCTLCGICIDS 48 Query: 113 CPVDAIVEGPN 123 CP +AI Sbjct: 49 CPFEAISIEKE 59 Score = 38.2 bits (87), Expect = 0.36, Method: Composition-based stats. Identities = 12/34 (35%), Positives = 18/34 (52%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 I++ KC CGLC ++C DA+ + N E Sbjct: 5 TINLEKCTGCGLCIKSCATDALHKENNKAMVNEN 38 >gi|197302758|ref|ZP_03167811.1| hypothetical protein RUMLAC_01487 [Ruminococcus lactaris ATCC 29176] gi|197298156|gb|EDY32703.1| hypothetical protein RUMLAC_01487 [Ruminococcus lactaris ATCC 29176] Length = 1188 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 26/84 (30%), Gaps = 14/84 (16%) Query: 58 NGEERCIACKLCEAICPAQ-----AITIESGPRCHDGTR---------RTVRYDIDMIKC 103 +CI C C +CP A+T E + +G + + C Sbjct: 689 WDPSKCIQCNRCAYVCPHAVIRPVALTEEEAAQAPEGIKTLGMIGMPDMKFTMTVSAYDC 748 Query: 104 IYCGLCQEACPVDAIVEGPNFEFA 127 CG C CP E E A Sbjct: 749 TGCGSCVNVCPGKKNKETGEVEKA 772 >gi|126179133|ref|YP_001047098.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanoculleus marisnigri JR1] gi|125861927|gb|ABN57116.1| formylmethanofuran dehydrogenase, subunit G [Methanoculleus marisnigri JR1] Length = 202 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 31/134 (23%), Positives = 42/134 (31%), Gaps = 24/134 (17%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 MR F V E++ ++FF T F+G E Sbjct: 1 MRSFVYYVREFLRPEWIR------KFFFARTA-------PLETPSYFKGYP-----TRTE 42 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C C C ICPA G + ++ CI CGLC EACP + Sbjct: 43 KECTGCFTCMMICPA------PGAIAVLRKKDEWEPEVYPGHCIRCGLCVEACPEGVLSS 96 Query: 121 GPNFEFATETRQEL 134 G + R Sbjct: 97 GRILDVTRRDRTAF 110 Score = 34.3 bits (77), Expect = 5.5, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 22/74 (29%), Gaps = 8/74 (10%) Query: 53 LRRYPNGEERCIACKLCEAICPAQ-------AITIESGPRCHDGTRRTVRYDI-DMIKCI 104 + C+ C C CP A + S R I M KC Sbjct: 113 WYHLEVDDTLCMRCGNCCVSCPVNREIDPQLAGSGTSASDEVIMRIEGGRVRILHMEKCT 172 Query: 105 YCGLCQEACPVDAI 118 C C+ CP AI Sbjct: 173 GCTTCETQCPNRAI 186 >gi|323169186|gb|EFZ54862.1| electron transport complex, RnfABCDGE type, B subunit [Shigella sonnei 53G] Length = 192 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI + + + C C LC + CP I Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTHCI 162 Query: 119 VEGPNFEFATETRQEL 134 P E + +L Sbjct: 163 SLQPVAETPDSWKWDL 178 Score = 35.5 bits (80), Expect = 2.4, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C C +ACPVDAI Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132 >gi|295112090|emb|CBL28840.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Synergistetes bacterium SGP1] Length = 628 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 37/98 (37%), Gaps = 15/98 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 LRY F+ + + ++ ++R+ +C C C CP AI+ Sbjct: 544 TLRY-FRDEYEAHVSEKRCPAKVC----QKMKRFEIDAAQCRGCTKCARSCPVGAISGV- 597 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + ID KCI CG C E CP AI E Sbjct: 598 ---------VKAPHLIDDGKCIRCGACMENCPFGAIRE 626 >gi|225166802|ref|YP_002650787.1| putative dihydroorotate dehydrogenase family protein [Clostridium botulinum] gi|253771334|ref|YP_003034159.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum D str. 1873] gi|225007466|dbj|BAH29562.1| putative dihydroorotate dehydrogenase family protein [Clostridium botulinum] gi|253721311|gb|ACT33604.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum D str. 1873] Length = 362 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 14/82 (17%) Query: 39 EKGSTSPRFRGEHALRRYP--NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 E+ + +G+ E++CI C +CE +CP A+ ++ Sbjct: 287 EEVKNTKLEKGDIKFNPDNPVIDEDKCIKCGVCERVCPYFALKLKEKINVD--------- 337 Query: 97 DIDMIKCIYCGLCQEACPVDAI 118 KC CGLC+ CPVDAI Sbjct: 338 ---TTKCFGCGLCESKCPVDAI 356 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 11/23 (47%), Positives = 14/23 (60%) Query: 98 IDMIKCIYCGLCQEACPVDAIVE 120 ID KCI CG+C+ CP A+ Sbjct: 308 IDEDKCIKCGVCERVCPYFALKL 330 >gi|218561250|ref|YP_002394163.1| pyruvate formate-lyase 3-activating enzyme [Escherichia coli S88] gi|218691120|ref|YP_002399332.1| putative pyruvate formate-lyase 3-activating enzyme [Escherichia coli ED1a] gi|237703757|ref|ZP_04534238.1| pyruvate-formate lyase-activating enzyme [Escherichia sp. 3_2_53FAA] gi|218368019|emb|CAR05821.1| putative pyruvate formate-lyase 3-activating enzyme [Escherichia coli S88] gi|218428684|emb|CAR09615.2| putative pyruvate formate-lyase 3-activating enzyme [Escherichia coli ED1a] gi|226901669|gb|EEH87928.1| pyruvate-formate lyase-activating enzyme [Escherichia sp. 3_2_53FAA] gi|323950274|gb|EGB46155.1| glycyl-radical enzyme activating protein family protein [Escherichia coli H252] gi|323955614|gb|EGB51374.1| glycyl-radical enzyme activating protein family protein [Escherichia coli H263] Length = 305 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 28/77 (36%), Gaps = 15/77 (19%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103 R L N CI C C CP QA++ + + I+ +C Sbjct: 45 PESQRHSPELLFKKND---CIRCGKCIDACPQQALSTTNA------------WFINRDRC 89 Query: 104 IYCGLCQEACPVDAIVE 120 I CG C E CP A+ Sbjct: 90 IQCGKCTEICPTRALEM 106 >gi|217966854|ref|YP_002352360.1| dihydroorotate dehydrogenase [Dictyoglomus turgidum DSM 6724] gi|217335953|gb|ACK41746.1| dihydroorotate dehydrogenase [Dictyoglomus turgidum DSM 6724] Length = 390 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 12/68 (17%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L + C +C +C+ +C A + G C CGLC Sbjct: 324 LYEAYINSDLCTSCGICKKVCIYDAPIEKDGKYF------------ITDLCDGCGLCVRL 371 Query: 113 CPVDAIVE 120 CP AI Sbjct: 372 CPTKAISM 379 >gi|194437731|ref|ZP_03069826.1| pyruvate-formate lyase-activating enzyme [Escherichia coli 101-1] gi|194423227|gb|EDX39219.1| pyruvate-formate lyase-activating enzyme [Escherichia coli 101-1] Length = 305 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 28/77 (36%), Gaps = 15/77 (19%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103 R L N CI C C CP QA++ + + I+ +C Sbjct: 45 PESQRHSPELLFKKND---CIRCGKCIDACPQQALSTTNA------------WFINRDRC 89 Query: 104 IYCGLCQEACPVDAIVE 120 I CG C E CP A+ Sbjct: 90 IQCGKCTEICPTRALEM 106 >gi|168183044|ref|ZP_02617708.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum Bf] gi|237794479|ref|YP_002862031.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum Ba4 str. 657] gi|182673874|gb|EDT85835.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum Bf] gi|229263629|gb|ACQ54662.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum Ba4 str. 657] Length = 1172 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 44/126 (34%), Gaps = 24/126 (19%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA---QAITIESGPRCHDGTRRTV--- 94 G+TS RG + ++CI C C ICP +A + + +R Sbjct: 668 GTTSYEKRGIAVMIPEWQ-IDKCIQCNQCSYICPHSVIRAYLLNKDEKEKAPSRFETKKA 726 Query: 95 ----------RYDIDMIKCIYCGLCQEACPVD--AIVEGP---NFEFATETRQ--ELYYD 137 R I + C CG C + CP A++ E +E + Sbjct: 727 AGKGLEELGYRIQISPLDCTGCGNCADVCPAPGKALIMKNAEEQIEMQSENWEFGLNINT 786 Query: 138 KERLLN 143 KE L++ Sbjct: 787 KENLMD 792 >gi|121997517|ref|YP_001002304.1| RnfABCDGE type electron transport complex subunit C [Halorhodospira halophila SL1] gi|121588922|gb|ABM61502.1| electron transport complex, RnfABCDGE type, C subunit [Halorhodospira halophila SL1] Length = 681 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 10/66 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E +CI C C CP AI + + + +C C LC +ACP+D Sbjct: 104 FIDESQCIGCTRCLPACPVDAIVG----------AQRQVHTVLADECTGCRLCVDACPMD 153 Query: 117 AIVEGP 122 I P Sbjct: 154 CITMQP 159 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 3/57 (5%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTV---RYDIDMIKCIYCGLCQEACP 114 + CI+C C +CP E R G D+D ++C C C+ CP Sbjct: 552 QPCISCGRCAEVCPEGLQPFEMARRIRAGVDVGEAAEHIDLDPMRCTGCSSCELVCP 608 Score = 33.5 bits (75), Expect = 9.1, Method: Composition-based stats. Identities = 13/29 (44%), Positives = 13/29 (44%), Gaps = 4/29 (13%) Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETR 131 CI CG C E CP P FE A R Sbjct: 554 CISCGRCAEVCPEG---LQP-FEMARRIR 578 >gi|242239349|ref|YP_002987530.1| electron transport complex, RnfABCDGE type, C subunit [Dickeya dadantii Ech703] gi|242131406|gb|ACS85708.1| electron transport complex, RnfABCDGE type, C subunit [Dickeya dadantii Ech703] Length = 673 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 34/106 (32%), Gaps = 13/106 (12%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C C CPA + + G + CI CG C CP I Sbjct: 378 CIRCSKCADACPAG-LLPQQLYWFSRGDEHEKARQHHLFDCIECGACAYVCP-SNIPLVQ 435 Query: 123 NF-----EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + E + +K + R+E+ R +V + R Sbjct: 436 YYRQEKAEIRALDVETHRANKAK-----ARYEARQAR-LVREKQAR 475 >gi|294950003|ref|XP_002786412.1| 68 kDa protein, putative [Perkinsus marinus ATCC 50983] gi|239900704|gb|EER18208.1| 68 kDa protein, putative [Perkinsus marinus ATCC 50983] Length = 614 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 1/74 (1%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 E LR E+RC K C+ C +G C + R + I CI CG+ Sbjct: 16 EEQRLRIAIVSEDRCKP-KKCQLECKKYCPVNRTGKFCVEVDRHSKVSWISETLCIGCGI 74 Query: 109 CQEACPVDAIVEGP 122 C + CP DAI Sbjct: 75 CVKKCPFDAITIIN 88 >gi|269926700|ref|YP_003323323.1| molybdopterin oxidoreductase, iron-sulfur binding subunit [Thermobaculum terrenum ATCC BAA-798] gi|269790360|gb|ACZ42501.1| molybdopterin oxidoreductase, iron-sulfur binding subunit [Thermobaculum terrenum ATCC BAA-798] Length = 984 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 36/122 (29%), Gaps = 21/122 (17%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE----ERCIACKLCEAICPAQAI 78 L F K + E+ T P F ++ Y G CI C C C ++ Sbjct: 716 TLEEFKKNPHFVEEYEEEHGTPPSFYPDYVYNSYKWGMAIDMNACIGCNACVIACQSENN 775 Query: 79 TIESGPRCHDGTRRTVRYDI---------------DMIKCIYCGL--CQEACPVDAIVEG 121 G + +R I + C +C C+ CPV A Sbjct: 776 IAVVGKKNVRNSREMHWLRIDTYFSGEASNPHTFYQPMMCQHCERAPCEYVCPVAATTHS 835 Query: 122 PN 123 P Sbjct: 836 PE 837 >gi|163853802|ref|YP_001641845.1| formate dehydrogenase, alpha subunit [Methylobacterium extorquens PA1] gi|163665407|gb|ABY32774.1| formate dehydrogenase, alpha subunit [Methylobacterium extorquens PA1] Length = 950 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 2/98 (2%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVR 95 K ++ + + + +CI C C C + R D Sbjct: 148 HVKPASDRYLPKDESNPYFTYDPSKCIVCNRCVRACEETQGTFALTIEGRGFDSRVAAGP 207 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 + +C+ CG C +ACP + E ++ E Sbjct: 208 TNFMQSECVSCGACVQACPTATLQEKTIHQYGQPDHSE 245 >gi|74318034|ref|YP_315774.1| electron transport complex protein RnfB [Thiobacillus denitrificans ATCC 25259] gi|123731760|sp|Q3SHB7|RNFB_THIDA RecName: Full=Electron transport complex protein rnfB gi|74057529|gb|AAZ97969.1| Electron transport complex, RnfABCDGE type, B subunit [Thiobacillus denitrificans ATCC 25259] Length = 188 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 28/87 (32%), Gaps = 10/87 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E E+ CI C LC CP AI+ + + I Sbjct: 89 EPKPLDEAHGTPKPKSVAFIDEQTCIGCTLCIQACPVDAISGAAKQ----------MHTI 138 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFE 125 +C C LC CPVD I P E Sbjct: 139 IADECTGCELCLAPCPVDCISMVPIAE 165 >gi|15802043|ref|NP_288065.1| electron transport complex protein RnfC [Escherichia coli O157:H7 EDL933] gi|17368144|sp|P58324|RNFC_ECO57 RecName: Full=Electron transport complex protein rnfC gi|12515618|gb|AAG56618.1|AE005386_9 putative membrane protein [Escherichia coli O157:H7 str. EDL933] Length = 740 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 41/112 (36%), Gaps = 13/112 (11%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 I F E A ++E +R R+E+ + R + + R Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEE-----KRAAEAKARFEARLAR-LEREKAAR 474 >gi|15831592|ref|NP_310365.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. Sakai] gi|168763667|ref|ZP_02788674.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4501] gi|217328656|ref|ZP_03444737.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. TW14588] gi|13361805|dbj|BAB35761.1| putative membrane protein [Escherichia coli O157:H7 str. Sakai] gi|189366209|gb|EDU84625.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4501] gi|217318003|gb|EEC26430.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. TW14588] gi|320188315|gb|EFW62977.1| Electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC1212] gi|326341995|gb|EGD65776.1| Electron transport complex protein RnfC [Escherichia coli O157:H7 str. 1044] Length = 772 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 41/112 (36%), Gaps = 13/112 (11%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 I F E A ++E +R R+E+ + R + + R Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEE-----KRAAEAKARFEARLAR-LEREKAAR 474 >gi|329115318|ref|ZP_08244072.1| Putative oxidoreductase YeiT [Acetobacter pomorum DM001] gi|326695297|gb|EGE46984.1| Putative oxidoreductase YeiT [Acetobacter pomorum DM001] Length = 605 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 27/78 (34%), Gaps = 3/78 (3%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 RC++C C A E + Y + M C C +C E CP Sbjct: 518 RYEAGRCLSCGNCFECDNCYASCPEQAITRLGPGKG---YAVSMDLCTGCAVCAEQCPCH 574 Query: 117 AIVEGPNFEFATETRQEL 134 AI P AT T+ L Sbjct: 575 AIEMDPEPVEATPTKGSL 592 >gi|309389842|gb|ADO77722.1| Ferredoxin hydrogenase [Halanaerobium praevalens DSM 2228] Length = 471 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 25/70 (35%), Gaps = 6/70 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGT------RRTVRYDIDMIKCIYCGLCQ 110 + +CI C C C AI P + ID KC+ CG C Sbjct: 142 YIDQHKCIECGKCAKTCSYNAILENQRPCSRACELEAISSNADRQAKIDREKCVSCGSCI 201 Query: 111 EACPVDAIVE 120 ACP AI E Sbjct: 202 NACPFGAITE 211 Score = 35.1 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 21/58 (36%), Gaps = 13/58 (22%) Query: 63 CIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C C CP AI I ID KCI CG C + C +AI Sbjct: 117 CRNCVAHKCVNACPVDAIVIIQNKAY-----------IDQHKCIECGKCAKTCSYNAI 163 >gi|288869832|ref|ZP_06111989.2| Fe-hydrogenase large subunit family protein [Clostridium hathewayi DSM 13479] gi|288869437|gb|EFD01736.1| Fe-hydrogenase large subunit family protein [Clostridium hathewayi DSM 13479] Length = 491 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 26/68 (38%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110 ++C C C CP AI + P + D ID KCI CG C Sbjct: 133 YIDPDKCKECGKCSQACPYNAIADLTRPCKKSCPVDAITMDEDGIVVIDESKCIQCGACI 192 Query: 111 EACPVDAI 118 +CP AI Sbjct: 193 HSCPFGAI 200 Score = 37.4 bits (85), Expect = 0.77, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 20/61 (32%), Gaps = 5/61 (8%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGT-----RRTVRYDIDMIKCIYCGLCQEACPVDA 117 C C + + + R ID KC CG C +ACP +A Sbjct: 94 CEGCPIARYVVTDNCQKCMGKACQNSCNFGAISMGHDRAYIDPDKCKECGKCSQACPYNA 153 Query: 118 I 118 I Sbjct: 154 I 154 >gi|225016113|ref|ZP_03705346.1| hypothetical protein CLOSTMETH_00057 [Clostridium methylpentosum DSM 5476] gi|224951110|gb|EEG32319.1| hypothetical protein CLOSTMETH_00057 [Clostridium methylpentosum DSM 5476] Length = 628 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 37/96 (38%), Gaps = 15/96 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 L+ FF+ + + K L +Y E++C C LC CP AIT Sbjct: 545 TLK-FFRNEYVAHVKDRKCPAGVC----KDLLQYEILEDKCKGCTLCARNCPVNAITGT- 598 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + ID KCI CG C E C +AI Sbjct: 599 ---------VKNPHKIDPAKCIKCGACMERCKFNAI 625 Score = 40.1 bits (92), Expect = 0.12, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 20/52 (38%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 + ++ + ++Y+I KC C LC CPV+AI Sbjct: 547 KFFRNEYVAHVKDRKCPAGVCKDLLQYEILEDKCKGCTLCARNCPVNAITGT 598 >gi|158258988|dbj|BAF82038.1| Fe-hydrogenase-like protein [uncultured parabasalid eukaryote] Length = 456 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 23/71 (32%), Gaps = 3/71 (4%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---YDIDMIKCIYCGLCQEACPV 115 +C+ C C C A + RR + C+ CG C CPV Sbjct: 16 DRGKCVGCGHCVEACEKVAGQCVLTLEPNGTRRRVRTALGVPMQQTNCVKCGQCTLVCPV 75 Query: 116 DAIVEGPNFEF 126 AI E + Sbjct: 76 GAITEKDELDI 86 >gi|157145889|ref|YP_001453208.1| electron transport complex protein RnfB [Citrobacter koseri ATCC BAA-895] gi|166225081|sp|A8AH09|RNFB_CITK8 RecName: Full=Electron transport complex protein rnfB gi|157083094|gb|ABV12772.1| hypothetical protein CKO_01640 [Citrobacter koseri ATCC BAA-895] Length = 192 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI + + + C C LC + CP I Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTQCI 162 Query: 119 VEGPNFEFATETRQEL 134 P E + +L Sbjct: 163 ELRPVAETPDSWKWDL 178 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C C +ACPVDAI Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132 >gi|319789973|ref|YP_004151606.1| Glutamate synthase (NADPH) [Thermovibrio ammonificans HB-1] gi|317114475|gb|ADU96965.1| Glutamate synthase (NADPH) [Thermovibrio ammonificans HB-1] Length = 505 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 31/98 (31%), Gaps = 25/98 (25%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 FK YPF LR +E+C+ CK C C A + Sbjct: 1 MLFKKPQVAFYPF------------MVLR----DDEKCVRCKSCVDQCSFNATYYDEDLN 44 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 R C+ C C+ CP DAI PN Sbjct: 45 ---------RIMNHHENCVNCKRCEAFCPTDAIKVVPN 73 >gi|225570648|ref|ZP_03779671.1| hypothetical protein CLOHYLEM_06748 [Clostridium hylemonae DSM 15053] gi|225160566|gb|EEG73185.1| hypothetical protein CLOHYLEM_06748 [Clostridium hylemonae DSM 15053] Length = 274 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQ 110 +E+CI C C+++CP AI+ + P R I+ KC+ CG+C Sbjct: 148 YIDQEKCIKCGKCKSVCPYDAISRKERPCQKACGVGAIESDNCGRARINNEKCVSCGMCM 207 Query: 111 EACPVDAI 118 +CP AI Sbjct: 208 VSCPFGAI 215 Score = 40.5 bits (93), Expect = 0.083, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 13/64 (20%) Query: 57 PNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 C C C +CP A+++ G R ID KCI CG C+ CP Sbjct: 117 YEVSNMCKGCLAHPCMEVCPKDAVSMVKG-----------RSYIDQEKCIKCGKCKSVCP 165 Query: 115 VDAI 118 DAI Sbjct: 166 YDAI 169 >gi|167569319|ref|ZP_02362193.1| ferredoxin [Burkholderia oklahomensis C6786] Length = 288 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 25/99 (25%), Gaps = 18/99 (18%) Query: 24 LRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG 83 L P E+ CI C LC CP AI Sbjct: 56 LAKLLGKPVIPLNPEHGVERPRP--------VAFIDEQLCIGCTLCMQACPVDAIVGAPK 107 Query: 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + I C C LC CPVD I P Sbjct: 108 Q----------MHTIVAELCTGCDLCVPPCPVDCIAMIP 136 >gi|95930556|ref|ZP_01313291.1| thiamine pyrophosphate enzyme-like TPP-binding [Desulfuromonas acetoxidans DSM 684] gi|95133391|gb|EAT15055.1| thiamine pyrophosphate enzyme-like TPP-binding [Desulfuromonas acetoxidans DSM 684] Length = 615 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 15/80 (18%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E+ + R + CI C+ C A++++ T + Sbjct: 538 EREVVKNQPRYAMEITSD------CIGCRRCVEAFECPALSMDEA---------TTMAVL 582 Query: 99 DMIKCIYCGLCQEACPVDAI 118 D +CI CG C CPV AI Sbjct: 583 DQDRCIGCGTCIPVCPVHAI 602 >gi|312172333|emb|CBX80590.1| Electron transport complex protein rnfC [Erwinia amylovora ATCC BAA-2158] Length = 710 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 48/133 (36%), Gaps = 8/133 (6%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 T++ P K + + + E+ CI C C CPA A+ + G Sbjct: 348 TLDVPVVKITNCILAPAVSEMGQNA-AEKNCIRCSACADACPA-ALLPQQLYWFSRGGDH 405 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF--EFATETRQELYYDKERLLNNGDRWES 150 ++ CI CG C CP I + E A +L ++ L N R+E+ Sbjct: 406 DKARAHNIADCIECGACAYVCP-SNIPLVQYYRQEKAEIQAIDLEAERAALAKN--RFEA 462 Query: 151 EIVRNIVTDSPYR 163 + + + R Sbjct: 463 R-QQRLEREKAAR 474 >gi|312793369|ref|YP_004026292.1| nitrite and sulfite reductase 4Fe-4S region [Caldicellulosiruptor kristjanssonii 177R1B] gi|312180509|gb|ADQ40679.1| nitrite and sulphite reductase 4Fe-4S region [Caldicellulosiruptor kristjanssonii 177R1B] Length = 296 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 9/76 (11%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G E C C LC+A+CPA+AI I+ + + ID KC YCG Sbjct: 152 GIKGAIEPEWEESSCTFCGLCQAVCPAKAIQIDE---------KNKKITIDRDKCTYCGR 202 Query: 109 CQEACPVDAIVEGPNF 124 C ++CP ++ P + Sbjct: 203 CVKSCPTNSWKGKPGY 218 >gi|292488196|ref|YP_003531078.1| electron transport complex protein RnfC [Erwinia amylovora CFBP1430] gi|292899402|ref|YP_003538771.1| electron transport complex protein [Erwinia amylovora ATCC 49946] gi|291199250|emb|CBJ46367.1| electron transport complex protein [Erwinia amylovora ATCC 49946] gi|291553625|emb|CBA20670.1| Electron transport complex protein rnfC [Erwinia amylovora CFBP1430] Length = 750 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 29/133 (21%), Positives = 48/133 (36%), Gaps = 8/133 (6%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 T++ P K + + + E+ CI C C CPA A+ + G Sbjct: 348 TLDVPVVKITNCILAPAVSEMGQNA-AEKNCIRCSACADACPA-ALLPQQLYWFSRGGDH 405 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF--EFATETRQELYYDKERLLNNGDRWES 150 ++ CI CG C CP I + E A +L ++ L N R+E+ Sbjct: 406 DKARAHNIADCIECGACAYVCP-SNIPLVQYYRQEKAEIQAIDLEAERAALAKN--RFEA 462 Query: 151 EIVRNIVTDSPYR 163 + + + R Sbjct: 463 R-QQRLEREKAAR 474 >gi|289523835|ref|ZP_06440689.1| NAD-dependent formate dehydrogenase, alpha subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502925|gb|EFD24089.1| NAD-dependent formate dehydrogenase, alpha subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 247 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 18/65 (27%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI C C C + + + CI CG C E CP I Sbjct: 126 DPDNCIRCDRCVRACETLGPSAIGPAWRGFNKKIVTPFMEPPKSCIGCGGCAEVCPTGYI 185 Query: 119 VEGPN 123 Sbjct: 186 ECVDE 190 >gi|187932563|ref|YP_001885665.1| pyridine nucleotide-disulphide oxidoreductase family protein [Clostridium botulinum B str. Eklund 17B] gi|187720716|gb|ACD21937.1| pyridine nucleotide-disulphide oxidoreductase family protein [Clostridium botulinum B str. Eklund 17B] Length = 896 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 45/135 (33%), Gaps = 15/135 (11%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 K T FE + H + C C C A I + ++ Sbjct: 223 RKITREEAFEIIKRAEENGLMHQIPNADGPGNTHAICNCCG--CSCYATRIAGMFQNNNM 280 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVE-------GPNFEFATETRQELYYDKERLL 142 R ID KC+ CG C + CPV+A+ P E + R++ Y+ + Sbjct: 281 VRSNYVSKIDKDKCVACGECVQVCPVNALKLGQKLCTKTPIVE---KKREDFAYNTDW-- 335 Query: 143 NNGDRWESEIVRNIV 157 D+W + N Sbjct: 336 -GEDKWNVDYRINRE 349 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 3/86 (3%) Query: 78 ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 T E + + +D +CI CG C C DAI ++ + T +EL Sbjct: 812 FTEEQMKKETERCLGCGATTVDQDQCIGCGACTTRCKFDAITLYKKYDAQSVTLKEL--- 868 Query: 138 KERLLNNGDRWESEIVRNIVTDSPYR 163 K +++ N + + I + S R Sbjct: 869 KPKVIKNIIKRKFVIKARKIKKSFKR 894 >gi|59711540|ref|YP_204316.1| electron transport complex protein RnfC [Vibrio fischeri ES114] gi|59479641|gb|AAW85428.1| fused predicted 4Fe-4S ferredoxin-type protein/conserved protein (Rnf/Rsx reducing system) [Vibrio fischeri ES114] Length = 827 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 44/136 (32%), Gaps = 14/136 (10%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 P K + + L Y + CI C C CP + + Sbjct: 351 HQQVPITKITNCIITPDKKELPLYNHEMA-CIRCSSCADACPTS-LLPQQLYWYSKSEDY 408 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT---ETRQE--LYYDKERLLNNGDR 147 + ++ CI CG C CP I + A +R++ L ++ +L R Sbjct: 409 DKCNEYNLNDCIECGACAYVCP-SEIPLVQYYRQAKSEIYSRKQDALAAERAKL-----R 462 Query: 148 WESEIVRNIVTDSPYR 163 +E E + D R Sbjct: 463 FE-EKNARLERDKLER 477 >gi|42526786|ref|NP_971884.1| Fe-hydrogenase large subunit family protein [Treponema denticola ATCC 35405] gi|41817101|gb|AAS11795.1| Fe-hydrogenase large subunit family protein [Treponema denticola ATCC 35405] Length = 493 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 6/67 (8%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112 EE+CI C +C CP A+ P + D ID KCI+CG C Sbjct: 145 DEEKCINCGICLKNCPYHAVIKIPVPCEEACPVGAISKDENGKERIDYHKCIFCGNCMRE 204 Query: 113 CPVDAIV 119 CP A++ Sbjct: 205 CPFGAMM 211 Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 5/80 (6%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV-----RYDIDMIK 102 R + +E C AC + + + P + + + R ID K Sbjct: 89 REKPTWPMLTVLDEACNACVKSKYMITNACQACVARPCMMNCPKTAIAISGGRARIDEEK 148 Query: 103 CIYCGLCQEACPVDAIVEGP 122 CI CG+C + CP A+++ P Sbjct: 149 CINCGICLKNCPYHAVIKIP 168 >gi|83409919|emb|CAI64340.1| formate dehydrogenase like protein, beta chain [uncultured archaeon] Length = 384 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 26/81 (32%), Gaps = 8/81 (9%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG--------PRCHDGTRRT 93 P E ++ Y CI C C+ +CP A +S Sbjct: 264 EIFPEIPDEERMQYYMEPMADCIDCGACKEVCPVCACGEDSKCTMFHSLVDNYKMSMYHM 323 Query: 94 VRYDIDMIKCIYCGLCQEACP 114 VR CI CG C + CP Sbjct: 324 VRLLHLSDSCIACGQCSDVCP 344 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 15/29 (51%) Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 R Y M CI CG C+E CPV A E Sbjct: 274 RMQYYMEPMADCIDCGACKEVCPVCACGE 302 >gi|330984846|gb|EGH82949.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv. lachrymans str. M301315] Length = 290 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 10/75 (13%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 RG + E CI C C CP AI + + + + + +C C Sbjct: 76 RGAAPAQVAFIREAECIGCTKCIQACPVDAIVGAAK----------LMHTVIVDECTGCD 125 Query: 108 LCQEACPVDAIVEGP 122 LC CPVD I P Sbjct: 126 LCVAPCPVDCIEMHP 140 >gi|283833245|ref|ZP_06352986.1| electron transport complex, RnfABCDGE type, B subunit [Citrobacter youngae ATCC 29220] gi|291070881|gb|EFE08990.1| electron transport complex, RnfABCDGE type, B subunit [Citrobacter youngae ATCC 29220] Length = 192 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI + + + C C LC + CP I Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTQCI 162 Query: 119 VEGPNFEFATETRQEL 134 P E + +L Sbjct: 163 ELRPVAETPDSWKWDL 178 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C C +ACPVDAI Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132 >gi|260779357|ref|ZP_05888249.1| electron transport complex protein RnfC [Vibrio coralliilyticus ATCC BAA-450] gi|260605521|gb|EEX31816.1| electron transport complex protein RnfC [Vibrio coralliilyticus ATCC BAA-450] Length = 923 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 37/104 (35%), Gaps = 9/104 (8%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C C CPA + + ++++ CI CG C CP I Sbjct: 378 CIRCGQCAEACPAS-LLPQQLQWHAKAEEYDKCEELNLKDCIECGACAFVCP-SEIPLVQ 435 Query: 123 NFEFAT---ETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + A TR+E + E R+E + R + D R Sbjct: 436 YYRQAKAEMRTRKE---ESEAAERAKIRFEEKKAR-LERDKAER 475 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 19/43 (44%) Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + A ++ TR+ + + + CI CG C EACP Sbjct: 347 LPHANVPITKTANCILAPTRKEISPNQYEMACIRCGQCAEACP 389 >gi|240141254|ref|YP_002965734.1| NAD-dependent formate dehydrogenase, molybdenum containing, alpha subunit [Methylobacterium extorquens AM1] gi|240011231|gb|ACS42457.1| NAD-dependent formate dehydrogenase, molybdenum containing, alpha subunit [Methylobacterium extorquens AM1] Length = 950 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 2/98 (2%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVR 95 K ++ + + + +CI C C C + R D Sbjct: 148 HVKPASDRYLPKDESNPYFTYDPSKCIVCNRCVRACEETQGTFALTIEGRGFDSRVAAGP 207 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 + +C+ CG C +ACP + E ++ E Sbjct: 208 TNFMQSECVSCGACVQACPTATLQEKTIHQYGQPDHSE 245 >gi|295402233|ref|ZP_06812190.1| formate dehydrogenase, alpha subunit [Geobacillus thermoglucosidasius C56-YS93] gi|294975728|gb|EFG51349.1| formate dehydrogenase, alpha subunit [Geobacillus thermoglucosidasius C56-YS93] Length = 987 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 3/83 (3%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD--- 97 + + Y +CIAC C +C + R + + Sbjct: 129 RPKVDPSEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPRVIWDNGVP 188 Query: 98 IDMIKCIYCGLCQEACPVDAIVE 120 I+ C+ CG C CP +A++E Sbjct: 189 INESSCVSCGQCVTVCPCNALME 211 Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q+ + Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKLHNTAELMGIEHQSYPYRPKVDPSEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|325297340|ref|YP_004257257.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Bacteroides salanitronis DSM 18170] gi|324316893|gb|ADY34784.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Bacteroides salanitronis DSM 18170] Length = 1185 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 27/81 (33%), Gaps = 15/81 (18%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG A N E CI C C +CP A T Sbjct: 676 RGVAAFVPEWN-PENCIQCNKCAYVCPHAAIRPFVLDAEEQKGANFTTLKAVGKQFDGMT 734 Query: 94 VRYDIDMIKCIYCGLCQEACP 114 R +D++ C+ CG C + CP Sbjct: 735 FRMQVDVLDCLGCGNCADVCP 755 Score = 34.3 bits (77), Expect = 6.0, Method: Composition-based stats. Identities = 8/20 (40%), Positives = 9/20 (45%) Query: 99 DMIKCIYCGLCQEACPVDAI 118 + CI C C CP AI Sbjct: 686 NPENCIQCNKCAYVCPHAAI 705 >gi|320353023|ref|YP_004194362.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Desulfobulbus propionicus DSM 2032] gi|320121525|gb|ADW17071.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Desulfobulbus propionicus DSM 2032] Length = 786 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 25/60 (41%), Gaps = 2/60 (3%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C LCE ICP AI DG Y D KCI CG C + CP V P Sbjct: 728 CRDCHLCETICPTGAIYRREITPGPDGVDY--EYVSDDDKCIACGFCADTCPCGIWVLRP 785 >gi|315028615|gb|EFT40547.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX4000] Length = 1243 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96 AL +RC C C +CP AI R Sbjct: 695 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 754 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125 + + C CGLC EACP A+V P E Sbjct: 755 QVSVKDCTGCGLCVEACPAKGKALVMRPYEE 785 >gi|315025844|gb|EFT37776.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX2137] Length = 1243 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96 AL +RC C C +CP AI R Sbjct: 695 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 754 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125 + + C CGLC EACP A+V P E Sbjct: 755 QVSVKDCTGCGLCVEACPAKGKALVMRPYEE 785 >gi|307295629|ref|ZP_07575464.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX0411] gi|306496341|gb|EFM65918.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX0411] Length = 1243 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96 AL +RC C C +CP AI R Sbjct: 695 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 754 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125 + + C CGLC EACP A+V P E Sbjct: 755 QVSVKDCTGCGLCVEACPAKGKALVMRPYEE 785 >gi|257087295|ref|ZP_05581656.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis D6] gi|256995325|gb|EEU82627.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis D6] Length = 1223 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96 AL +RC C C +CP AI R Sbjct: 675 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 734 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125 + + C CGLC EACP A+V P E Sbjct: 735 QVSVKDCTGCGLCVEACPAKGKALVMRPYEE 765 >gi|257082146|ref|ZP_05576507.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis E1Sol] gi|256990176|gb|EEU77478.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis E1Sol] Length = 1223 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96 AL +RC C C +CP AI R Sbjct: 675 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 734 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125 + + C CGLC EACP A+V P E Sbjct: 735 QVSVKDCTGCGLCVEACPAKGKALVMRPYEE 765 >gi|256853610|ref|ZP_05558975.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Enterococcus faecalis T8] gi|256710553|gb|EEU25596.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Enterococcus faecalis T8] Length = 1226 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96 AL +RC C C +CP AI R Sbjct: 678 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 737 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125 + + C CGLC EACP A+V P E Sbjct: 738 QVSVKDCTGCGLCVEACPAKGKALVMRPYEE 768 >gi|123427430|ref|XP_001307251.1| pyruvate:ferredoxin oxidoreductase F [Trichomonas vaginalis G3] gi|121888869|gb|EAX94321.1| pyruvate:ferredoxin oxidoreductase F [Trichomonas vaginalis G3] Length = 904 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 30/146 (20%), Positives = 49/146 (33%), Gaps = 19/146 (13%) Query: 31 KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE-------SG 83 T P + +S + A ++CI C C C I + Sbjct: 673 PITARIPRDGLGSSKYEKRGIATNIPVWDADKCIQCNTCAYSCAHAVIRPQLMKHGKGPE 732 Query: 84 PRCHDGTRRTVRYD----IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE---TRQELYY 136 +++ YD + C+ C +C E CP A+ F ATE T+ Y Sbjct: 733 GVKVLQSKKFKGYDFAITVSAHDCLSCQVCIEKCPTKALS----FPLATEEVVTKAAALY 788 Query: 137 DK-ERLLNNGDRWESEIVRNIVTDSP 161 DK +L + E++ N + Sbjct: 789 DKFAKLPDIDALREADPALNESLEKK 814 >gi|52549205|gb|AAU83054.1| NADH-ubiquinone oxidoreductase NADH-binding 51 kD subunit [uncultured archaeon GZfos26D6] Length = 654 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 10/62 (16%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L Y ++C AC+LC CP AI + + V + ID KCI CG+C + Sbjct: 559 LISYYIEPDKCTACRLCMKNCPEGAIEGD----------KRVIHVIDQTKCIKCGICYDV 608 Query: 113 CP 114 CP Sbjct: 609 CP 610 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 17/40 (42%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 I+ + + Y I+ KC C LC + CP AI Sbjct: 545 HIKERRCPALVCKDLISYYIEPDKCTACRLCMKNCPEGAI 584 >gi|303327208|ref|ZP_07357650.1| iron-sulfur cluster-binding protein [Desulfovibrio sp. 3_1_syn3] gi|302863196|gb|EFL86128.1| iron-sulfur cluster-binding protein [Desulfovibrio sp. 3_1_syn3] Length = 364 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 11/76 (14%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 E+ C+ C C CP +A+++ +D+ +CI C C C Sbjct: 186 THVQVDEKTCVGCGKCVKACPQKALSLRKKKS-----------QVDVNRCIGCFECITVC 234 Query: 114 PVDAIVEGPNFEFATE 129 PV AI E Sbjct: 235 PVKAISLDWATEMTPF 250 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 9/37 (24%), Positives = 14/37 (37%) Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + +D C+ CG C +ACP A+ Sbjct: 178 PGKKDQHATHVQVDEKTCVGCGKCVKACPQKALSLRK 214 >gi|288931116|ref|YP_003435176.1| CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit [Ferroglobus placidus DSM 10642] gi|288893364|gb|ADC64901.1| CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit [Ferroglobus placidus DSM 10642] Length = 804 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 5/101 (4%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++R N +C C C CP + I+ G T+ + +CI Sbjct: 390 KYRFFANDEELWNEINKCTQCMNCVFTCPHN-LRIDQGMAHAQKTKDLSKLAKLEEQCIA 448 Query: 106 CGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGD 146 CG C++ACP + I + R Y+K+ + G Sbjct: 449 CGKCEQACPKN-IKIINVIMASNFDR---LYNKKGKMRVGR 485 >gi|109899274|ref|YP_662529.1| electron transport complex, RnfABCDGE type, C subunit [Pseudoalteromonas atlantica T6c] gi|109701555|gb|ABG41475.1| electron transport complex, RnfABCDGE type, C subunit [Pseudoalteromonas atlantica T6c] Length = 890 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 37/107 (34%), Gaps = 6/107 (5%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C CP + + D ++ CI CG C CP I Sbjct: 385 QPCIRCSACADACPVS-LLPQQLFWHSKAKELDKAQDYNLFDCIECGACAYVCP-SEIPL 442 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT----DSPYR 163 + A + +K++ +R+ES R + D +R Sbjct: 443 VHYYRVAKAEIRVEQEEKQKSDKARERFESRAARLVREQEARDEKHR 489 >gi|330506892|ref|YP_004383320.1| sulfite reductase subunit beta [Methanosaeta concilii GP-6] gi|328927700|gb|AEB67502.1| sulfite reductase, beta subunit [Methanosaeta concilii GP-6] Length = 286 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 21/69 (30%), Gaps = 11/69 (15%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G E+C C C +C A I ID KC+ CG Sbjct: 155 GLMGRVLPQIDLEKCTGCGKCVEVCKVGATKIVEEKAI-----------IDYDKCVRCGR 203 Query: 109 CQEACPVDA 117 C CP A Sbjct: 204 CVAVCPEAA 212 Score = 38.2 bits (87), Expect = 0.40, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 16/55 (29%) Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 A G V ID+ KC CG C E C V A + Sbjct: 143 AFPCTRPQFNEIGLMGRVLPQIDLEKCTGCGKCVEVCKVGATKIVEEKAIIDYDK 197 >gi|283955081|ref|ZP_06372584.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Campylobacter jejuni subsp. jejuni 414] gi|283793448|gb|EFC32214.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Campylobacter jejuni subsp. jejuni 414] Length = 1186 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 43/133 (32%), Gaps = 30/133 (22%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA------------------QAIT 79 FE G+T RG + CI C C ++CP Sbjct: 668 FEHGTTEYEKRGVGVMVPRWIE-ANCIQCNQCASVCPHAVIRPFLINDEEMANAPRGVKD 726 Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV--DAIVEGP--------NFEFATE 129 + G + + + + + C C LC CP ++V P E A Sbjct: 727 HALEAKGVKGEKLSFKIQVSPLDCTGCELCVHECPTKEKSLVMVPLREEMDFGEQENADY 786 Query: 130 TRQELYYDKERLL 142 +E+ Y K+ +L Sbjct: 787 LFKEITY-KDDIL 798 >gi|196250631|ref|ZP_03149320.1| formate dehydrogenase, alpha subunit [Geobacillus sp. G11MC16] gi|196209850|gb|EDY04620.1| formate dehydrogenase, alpha subunit [Geobacillus sp. G11MC16] Length = 987 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 27/83 (32%), Gaps = 3/83 (3%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---YD 97 + + Y +CIAC C C + R V Sbjct: 129 RPKVDPSEVDMSHPFYRYDPNQCIACGQCVEACQNLQVNETLSIDWEAERPRVVWDGGVP 188 Query: 98 IDMIKCIYCGLCQEACPVDAIVE 120 I+ C+ CG C CP +A++E Sbjct: 189 INESSCVSCGHCVTVCPCNALME 211 Score = 38.5 bits (88), Expect = 0.27, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q + Y D + Sbjct: 91 RLLENHLLYCTVCDNNNGNCKLHNTAEMMQIEHQTYPYRPKVDPSEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C EAC Sbjct: 151 CIACGQCVEAC 161 >gi|148642843|ref|YP_001273356.1| tungsten formylmethanofuran dehydrogenase, subunit F, FwdF [Methanobrevibacter smithii ATCC 35061] gi|148551860|gb|ABQ86988.1| tungsten formylmethanofuran dehydrogenase, subunit F, FwdF [Methanobrevibacter smithii ATCC 35061] Length = 335 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 37/100 (37%), Gaps = 8/100 (8%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG----PRCHDGTRRTVRY 96 G P RG + C+ C LC CP A+++ + V Sbjct: 39 GPIVPIARGLIEMDLVSVTSNTCVLCGLCSVACPFDALSLTINGNDIKETGNYPVWEVES 98 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 +I+ CIYCG C CP D I+ +R++L Sbjct: 99 EINDDDCIYCGRCYSVCPRDTILFKREL----PSREDLVI 134 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 R + + E++C+ C +C +CPA AI++ + P + ++D KCIY Sbjct: 127 PSREDLVIGEISVDEDKCVYCSICSEMCPAGAISLTNNPEFSNDNLNNTI-EVDTSKCIY 185 Query: 106 CGLCQEACPVDAI 118 CG+C+ ACP DAI Sbjct: 186 CGVCKRACPQDAI 198 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ CI C C ++CP I +D KC+YC +C E CP AI Sbjct: 101 NDDDCIYCGRCYSVCPRDTILF-KRELPSREDLVIGEISVDEDKCVYCSICSEMCPAGAI 159 Query: 119 VEGPNFEFATET 130 N EF+ + Sbjct: 160 SLTNNPEFSNDN 171 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 4/85 (4%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDM 100 P F ++ +CI C +C+ CP AI + + I Sbjct: 165 PEFSNDNLNNTIEVDTSKCIYCGVCKRACPQDAIKAVCSTCMLQDQIKAPEINGTASILK 224 Query: 101 IKCIYCGLCQEACPVDAIVEGPNFE 125 C+ C C+E CPVD I FE Sbjct: 225 DGCVNCSWCKEVCPVDTINVTKPFE 249 Score = 42.4 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 32/76 (42%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R R+ + +RC+ C +C +CP ++ + G + C+ CG Sbjct: 6 RSGEETRKLSHNNDRCVGCGICTDVCPTSSLRLGPIVPIARGLIEMDLVSVTSNTCVLCG 65 Query: 108 LCQEACPVDAIVEGPN 123 LC ACP DA+ N Sbjct: 66 LCSVACPFDALSLTIN 81 Score = 38.9 bits (89), Expect = 0.24, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 11/79 (13%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + + + F G L + AC C+ +CP A+ I Sbjct: 237 CPVDTINVTKPFEGTLKLVETDESTCKGDACHACQDVCPCDAVEIIDNKA---------- 286 Query: 96 YDIDMIKCIYCGLCQEACP 114 I++ C CG C ACP Sbjct: 287 -TINLDYCNLCGACVNACP 304 Score = 33.9 bits (76), Expect = 8.3, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C C+ +CP I + + +GT + V D K C CQ+ CP DA+ Sbjct: 227 CVNCSWCKEVCPVDTINVT---KPFEGTLKLVETDESTCKGDACHACQDVCPCDAVEIID 283 Query: 123 N 123 N Sbjct: 284 N 284 >gi|53804900|ref|YP_113272.1| pyruvate ferredoxin/flavodoxin oxidoreductase family protein [Methylococcus capsulatus str. Bath] gi|53758661|gb|AAU92952.1| pyruvate ferredoxin/flavodoxin oxidoreductase family protein [Methylococcus capsulatus str. Bath] Length = 1188 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 31/113 (27%), Gaps = 27/113 (23%) Query: 37 PFEKGSTSPRFRGEHALRRYP---NGEERCIACKLCEAICPA--------------QAIT 79 P + S R E + CI C C +CP A Sbjct: 660 PVDGTYPSGTTRWEKRNIADTVPVWEPDICIQCGNCSFVCPHSVIRAKFYPESRLAGAPA 719 Query: 80 IESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPVD--------AIVEGP 122 + RY + + C CGLC E CPV AI P Sbjct: 720 GFKSAPINARGFPETRYTLQVYVEDCTGCGLCAEVCPVRSPREAGVKAINMRP 772 >gi|330937551|gb|EGH41492.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas syringae pv. pisi str. 1704B] Length = 291 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 28/75 (37%), Gaps = 10/75 (13%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 RG + E CI C C CP AI S + + + + +C C Sbjct: 76 RGTAPAQVAFIREAECIGCTKCIQACPVDAILGASK----------LMHTVIIDECTGCD 125 Query: 108 LCQEACPVDAIVEGP 122 LC CPVD I P Sbjct: 126 LCVAPCPVDCIEMHP 140 >gi|330835751|ref|YP_004410479.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Metallosphaera cuprina Ar-4] gi|329567890|gb|AEB95995.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Metallosphaera cuprina Ar-4] Length = 109 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 26/89 (29%), Gaps = 2/89 (2%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93 + P + + C+A C CP P ++ Sbjct: 22 VYAPADPPPVPKEKALGIHGTIVGVDFDLCLADGSCITACPVNVFQWYDTPGHPASEKKA 81 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 I+ CI+C C CPV AI P Sbjct: 82 DP--INEQACIFCMACVNVCPVAAIDVKP 108 >gi|323978232|gb|EGB73318.1| electron transporter [Escherichia coli TW10509] Length = 192 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 26/84 (30%), Gaps = 10/84 (11%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 A E CI C C CP AI + + + C C LC Sbjct: 105 PARMVAFIDENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCV 154 Query: 111 EACPVDAIVEGPNFEFATETRQEL 134 + CP I P E + +L Sbjct: 155 DPCPTHCISLQPVAETPDSWKWDL 178 >gi|320668652|gb|EFX35457.1| electron transport complex protein RnfB [Escherichia coli O157:H7 str. LSU-61] Length = 192 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI + + + C C LC + CP I Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTHCI 162 Query: 119 VEGPNFEFATETRQEL 134 P E + +L Sbjct: 163 SLQPVAETPDSWKWDL 178 Score = 35.5 bits (80), Expect = 2.5, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C C +ACPVDAI Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132 >gi|332654222|ref|ZP_08419966.1| Fe-hydrogenase large subunit family protein [Ruminococcaceae bacterium D16] gi|332517308|gb|EGJ46913.1| Fe-hydrogenase large subunit family protein [Ruminococcaceae bacterium D16] Length = 505 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQ 110 + +CI C C CP AI P G+ R ID KC+ CG+C Sbjct: 145 FIDQTKCIKCGKCADACPYGAILKLERPCAEACGMDAIGSDELGRAKIDYDKCVSCGMCL 204 Query: 111 EACPVDAI 118 CP AI Sbjct: 205 VNCPFGAI 212 Score = 41.2 bits (95), Expect = 0.046, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 13/60 (21%) Query: 61 ERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C C +CP AI++ G ID KCI CG C +ACP AI Sbjct: 118 NMCQGCLAHPCMEVCPKDAISLVQGKSF-----------IDQTKCIKCGKCADACPYGAI 166 >gi|289550091|ref|YP_003470995.1| Formate dehydrogenase related protein [Staphylococcus lugdunensis HKU09-01] gi|315659277|ref|ZP_07912141.1| NAD-dependent formate dehydrogenase [Staphylococcus lugdunensis M23590] gi|289179623|gb|ADC86868.1| Formate dehydrogenase related protein [Staphylococcus lugdunensis HKU09-01] gi|315495702|gb|EFU84033.1| NAD-dependent formate dehydrogenase [Staphylococcus lugdunensis M23590] Length = 984 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 13/96 (13%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P+EK Y +CI C C C + R + Sbjct: 131 PYEKDYGP----------FYRYDPNQCILCGRCVEACQDIEVNETIRIDWDREHPRVIWD 180 Query: 97 D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 + I+ C+ CG C CP +A++E A Sbjct: 181 NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGY 216 Score = 40.9 bits (94), Expect = 0.058, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 16/68 (23%), Gaps = 8/68 (11%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105 R C C CE Y D +CI Sbjct: 90 RILEKHMLYCTVCDYNNGDCEIHNTMDEWGLQHQTYEYKEKPYEKDYGPFYRYDPNQCIL 149 Query: 106 CGLCQEAC 113 CG C EAC Sbjct: 150 CGRCVEAC 157 >gi|312112276|ref|YP_003990592.1| formate dehydrogenase, subunit alpha [Geobacillus sp. Y4.1MC1] gi|311217377|gb|ADP75981.1| formate dehydrogenase, alpha subunit [Geobacillus sp. Y4.1MC1] Length = 987 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 3/83 (3%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD--- 97 + + Y +CIAC C +C + R + + Sbjct: 129 RPKVDPSEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPRVIWDNGVP 188 Query: 98 IDMIKCIYCGLCQEACPVDAIVE 120 I+ C+ CG C CP +A++E Sbjct: 189 INESSCVSCGQCVTVCPCNALME 211 Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q+ + Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKLHNTAELMGIEHQSYPYRPKVDPSEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|242399493|ref|YP_002994918.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit F [Thermococcus sibiricus MM 739] gi|242265887|gb|ACS90569.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit F [Thermococcus sibiricus MM 739] Length = 602 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 10/70 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L +Y E+C C C +CP +AI+ E G I+ CI CG C E Sbjct: 537 LIKYVIITEKCTGCTACAIMCPVKAISGERGKPHL----------INQEACIKCGTCYEV 586 Query: 113 CPVDAIVEGP 122 C +AI Sbjct: 587 CRFNAIEITD 596 Score = 38.5 bits (88), Expect = 0.27, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 15/39 (38%) Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 G + ++Y I KC C C CPV AI Sbjct: 524 HIEGRCPAKVCKPLIKYVIITEKCTGCTACAIMCPVKAI 562 >gi|218133263|ref|ZP_03462067.1| hypothetical protein BACPEC_01128 [Bacteroides pectinophilus ATCC 43243] gi|217992136|gb|EEC58140.1| hypothetical protein BACPEC_01128 [Bacteroides pectinophilus ATCC 43243] Length = 483 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQA------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 ++C C C CP A +++ P ID KCI CG C Sbjct: 126 YIDPQKCRECGQCAKACPYNAIADLIRPCMKTCPVGAIEMDEYGVSKIDESKCIECGKCI 185 Query: 111 EACPVDAI 118 +CP AI Sbjct: 186 HSCPFGAI 193 >gi|166032525|ref|ZP_02235354.1| hypothetical protein DORFOR_02240 [Dorea formicigenerans ATCC 27755] gi|166026882|gb|EDR45639.1| hypothetical protein DORFOR_02240 [Dorea formicigenerans ATCC 27755] Length = 607 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 11/69 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 ++ CI CK C AI + G ID C C LC + CPV Sbjct: 550 HVDQDSCIGCKKCIRDLGCPAIVMNDGK-----------ICIDASMCTGCHLCSQVCPVC 598 Query: 117 AIVEGPNFE 125 AI G ++E Sbjct: 599 AIAGGDDYE 607 >gi|158321271|ref|YP_001513778.1| formate dehydrogenase, alpha subunit [Alkaliphilus oremlandii OhILAs] gi|158141470|gb|ABW19782.1| formate dehydrogenase, alpha subunit [Alkaliphilus oremlandii OhILAs] Length = 891 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 28/83 (33%), Gaps = 7/83 (8%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYD 97 EK + + Y +CI C C +C Q + T + Sbjct: 126 EKRNLPIDYSNHF----YTYDPNKCILCGKCVRVCSELQCTNAITIDERGFHTSIATPFR 181 Query: 98 --IDMIKCIYCGLCQEACPVDAI 118 ++ C+ CG C CPV A+ Sbjct: 182 KGLEHSTCVSCGNCVAVCPVGAL 204 Score = 37.0 bits (84), Expect = 0.94, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 19/66 (28%), Gaps = 8/66 (12%) Query: 56 YPNGEERCIAC---KLCEAICPAQAI-----TIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 + N C+ C C+ + + R Y D KCI CG Sbjct: 91 FSNHPNDCLTCEKSGECKLQDYCYEYGVLGGSYKGEKRNLPIDYSNHFYTYDPNKCILCG 150 Query: 108 LCQEAC 113 C C Sbjct: 151 KCVRVC 156 >gi|218532746|ref|YP_002423562.1| formate dehydrogenase, subunit alpha [Methylobacterium chloromethanicum CM4] gi|218525049|gb|ACK85634.1| formate dehydrogenase, alpha subunit [Methylobacterium chloromethanicum CM4] Length = 950 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 2/98 (2%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVR 95 K ++ + + + +CI C C C + R D Sbjct: 148 HVKPASDRYLPKDESNPYFTYDPSKCIVCNRCVRACEETQGTFALTIEGRGFDSRVAAGP 207 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 + +C+ CG C +ACP + E ++ E Sbjct: 208 TNFMQSECVSCGACVQACPTATLQEKTIHQYGQPDHSE 245 >gi|134300063|ref|YP_001113559.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfotomaculum reducens MI-1] gi|134052763|gb|ABO50734.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Desulfotomaculum reducens MI-1] Length = 267 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 30/91 (32%), Gaps = 21/91 (23%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C +C C AI+ +++ +KC CG C CP +AI Sbjct: 47 DSSICLECGMCRESCRFGAIS--------------ETFNMIPMKCEGCGACVLVCPQEAI 92 Query: 119 VE----GPNFEFATETRQELYYDKERLLNNG 145 + R Y LL+ G Sbjct: 93 RLEDVKTGETYLSNTQRGTFSY---ALLDIG 120 >gi|148257546|ref|YP_001242131.1| putative 2-ketoglutarate [Bradyrhizobium sp. BTAi1] gi|146409719|gb|ABQ38225.1| putative 2-ketoglutarate [Bradyrhizobium sp. BTAi1] Length = 599 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 30/107 (28%), Gaps = 20/107 (18%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 K + R + + CI C C ICP IT D R Sbjct: 475 DVKLALGEAHRCLNCDVQTVFSNTLCIECDACADICPMDCITFTDNGEEADLRSRLRAPS 534 Query: 98 IDMIK--------------------CIYCGLCQEACPVDAIVEGPNF 124 + + C++CGLC E CP A F Sbjct: 535 VHPDQSLYVSSDLKTGRVMVKDEDVCLHCGLCAERCPTGAWDMQKYF 581 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 11/26 (42%), Positives = 13/26 (50%) Query: 103 CIYCGLCQEACPVDAIVEGPNFEFAT 128 CI C C + CP+D I N E A Sbjct: 500 CIECDACADICPMDCITFTDNGEEAD 525 >gi|283768913|ref|ZP_06341823.1| electron transport complex, RnfABCDGE type, C subunit [Bulleidia extructa W1219] gi|283104466|gb|EFC05840.1| electron transport complex, RnfABCDGE type, C subunit [Bulleidia extructa W1219] Length = 438 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 26/86 (30%), Gaps = 2/86 (2%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + S S G ++ C+ C C CP + H Sbjct: 332 IPNNQWSISQSTNGVTVMKHIKEEAINCLRCGACVDHCPMG-LEPVRIADEHKVVDYDHL 390 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEG 121 + + CI CGLC CP I Sbjct: 391 VKLRVTDCIECGLCTYVCP-SKIDMT 415 >gi|239635947|ref|ZP_04676964.1| formate dehydrogenase, alpha subunit [Staphylococcus warneri L37603] gi|239598412|gb|EEQ80892.1| formate dehydrogenase, alpha subunit [Staphylococcus warneri L37603] Length = 989 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 13/96 (13%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P+EK Y +CI C C C + R + Sbjct: 131 PYEKDYGP----------FYRYDPNQCILCGRCVEACQDIEVNETISIDWDREHPRVIWD 180 Query: 97 D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 + I+ C+ CG C CP +A++E A Sbjct: 181 NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGY 216 Score = 41.2 bits (95), Expect = 0.051, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 16/68 (23%), Gaps = 8/68 (11%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105 R C C CE Y D +CI Sbjct: 90 RILEKHMLYCTVCDYNNGDCEIHNTMDEWGLQHQTYEYKEKPYEKDYGPFYRYDPNQCIL 149 Query: 106 CGLCQEAC 113 CG C EAC Sbjct: 150 CGRCVEAC 157 >gi|227872319|ref|ZP_03990674.1| pyruvate synthase [Oribacterium sinus F0268] gi|227841826|gb|EEJ52101.1| pyruvate synthase [Oribacterium sinus F0268] Length = 1178 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 44/134 (32%), Gaps = 30/134 (22%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG N + CI C C +CP +A + + Sbjct: 681 RGIAVNVPAWN-PDNCIQCNFCSYVCPHAAIRAFAYTEDEAAKAPEADQQKAMNGMPNYK 739 Query: 94 VRYDIDMIKCIYCGLCQEACP----VDAIVEGPN---------FEFATE--TRQELYYDK 138 + ++ C+ CG C CP A+V P F++A E +QE+ Sbjct: 740 FGIKVSVLDCVGCGSCANVCPGMKGEKALVMSPIEDNLDRQKYFDYAVELPEKQEVIAKF 799 Query: 139 ERLLNNGDRWESEI 152 + G +++ + Sbjct: 800 KETTVKGSQFKKPL 813 >gi|322807129|emb|CBZ04703.1| dihydropyrimidine dehydrogenase [NADP+] [Clostridium botulinum H04402 065] Length = 411 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 7/110 (6%) Query: 15 EFVGAFFLCLRY-FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + + ++ F+ + K + EE C+ C C C Sbjct: 295 DMIEGLSYYMKEKGFEKLEDMVGLANKNIIPAEDLDRGYIVYPKFNEENCVGCGRCYISC 354 Query: 74 PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 G + + + ++ C+ C LC CPV I +G Sbjct: 355 YDG------GHQAIKWDGKNRKPILEKENCVGCHLCANVCPVQCISKGEI 398 >gi|218705129|ref|YP_002412648.1| electron transport complex protein RnfB [Escherichia coli UMN026] gi|293405127|ref|ZP_06649119.1| electron transport complex protein RnfB [Escherichia coli FVEC1412] gi|293409939|ref|ZP_06653515.1| conserved hypothetical protein [Escherichia coli B354] gi|298380775|ref|ZP_06990374.1| electron transport complex protein rnfB [Escherichia coli FVEC1302] gi|300901565|ref|ZP_07119634.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli MS 198-1] gi|301026784|ref|ZP_07190188.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli MS 69-1] gi|331663100|ref|ZP_08364010.1| electron transport complex protein RnfB [Escherichia coli TA143] gi|226735416|sp|B7NB82|RNFB_ECOLU RecName: Full=Electron transport complex protein rnfB gi|218432226|emb|CAR13116.1| putative iron-sulfur protein [Escherichia coli UMN026] gi|291427335|gb|EFF00362.1| electron transport complex protein RnfB [Escherichia coli FVEC1412] gi|291470407|gb|EFF12891.1| conserved hypothetical protein [Escherichia coli B354] gi|298278217|gb|EFI19731.1| electron transport complex protein rnfB [Escherichia coli FVEC1302] gi|300355032|gb|EFJ70902.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli MS 198-1] gi|300395322|gb|EFJ78860.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli MS 69-1] gi|323968396|gb|EGB63802.1| electron transporter [Escherichia coli M863] gi|327252743|gb|EGE64397.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli STEC_7v] gi|331058899|gb|EGI30876.1| electron transport complex protein RnfB [Escherichia coli TA143] Length = 192 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 26/84 (30%), Gaps = 10/84 (11%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 A E CI C C CP AI + + + C C LC Sbjct: 105 PARMVAFIDENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCV 154 Query: 111 EACPVDAIVEGPNFEFATETRQEL 134 + CP I P E + +L Sbjct: 155 DPCPTHCISLQPVAETPDSWKWDL 178 >gi|197334471|ref|YP_002155696.1| electron transport complex protein RnfC [Vibrio fischeri MJ11] gi|197315961|gb|ACH65408.1| electron transport complex protein RnfC [Vibrio fischeri MJ11] Length = 784 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 27/136 (19%), Positives = 44/136 (32%), Gaps = 14/136 (10%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 P K + + L Y + CI C C CP + + Sbjct: 351 HQQVPITKITNCIITPDKKELPLYNHEMA-CIRCSSCADACPTS-LLPQQLYWYSKSEDY 408 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT---ETRQE--LYYDKERLLNNGDR 147 + ++ CI CG C CP I + A +R++ L ++ +L R Sbjct: 409 DKCNEYNLADCIECGACAYVCP-SEIPLVQYYRQAKSEIYSRKQDALAAERAKL-----R 462 Query: 148 WESEIVRNIVTDSPYR 163 +E E + D R Sbjct: 463 FE-EKNARLERDKLER 477 >gi|158520606|ref|YP_001528476.1| hypothetical protein Dole_0589 [Desulfococcus oleovorans Hxd3] gi|158509432|gb|ABW66399.1| protein of unknown function DUF362 [Desulfococcus oleovorans Hxd3] Length = 385 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 10/59 (16%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C +C + CP A+T+ G D CI+C CQE CP AI Sbjct: 324 CKQCGICVSHCPVNAMTMAEGEFP----------RADAAACIHCYCCQEMCPEHAIELT 372 Score = 35.5 bits (80), Expect = 2.4, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%) Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 R ++ C CG+C CPV+A+ Sbjct: 312 RMNCTPEVVEAVCKQCGICVSHCPVNAMTM 341 >gi|82777102|ref|YP_403451.1| electron transport complex protein RnfB [Shigella dysenteriae Sd197] gi|309788405|ref|ZP_07683009.1| electron transport complex, RnfABCDGE type, B subunit [Shigella dysenteriae 1617] gi|123769594|sp|Q32FE5|RNFB_SHIDS RecName: Full=Electron transport complex protein rnfB gi|81241250|gb|ABB61960.1| conserved hypothetical protein [Shigella dysenteriae Sd197] gi|308923787|gb|EFP69290.1| electron transport complex, RnfABCDGE type, B subunit [Shigella dysenteriae 1617] Length = 192 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI + + + C C LC + CP I Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTHCI 162 Query: 119 VEGPNFEFATETRQEL 134 P E + +L Sbjct: 163 SLQPVAETPDSWKWDL 178 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 2/49 (4%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + +A ++ + R ID CI C C +ACPVDAI Sbjct: 86 AELLNVEAQPLDGEAQELTPARMVAV--IDENNCIGCTKCIQACPVDAI 132 >gi|152974336|ref|YP_001373853.1| formate dehydrogenase, alpha subunit [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152023088|gb|ABS20858.1| formate dehydrogenase, alpha subunit [Bacillus cytotoxicus NVH 391-98] Length = 980 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+ K SP + + Y +CIAC C +C + R + Sbjct: 125 KYPY-KPKVSPSEV-DMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWSLERPRVI 182 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 + I+ C+ CG C CP +A++E Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211 Score = 39.7 bits (91), Expect = 0.12, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 20/71 (28%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ + IE + Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKIHNTVHMMGIEEQKYPYKPKVSPSEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|326796151|ref|YP_004313971.1| electron transport complex protein rnfB [Marinomonas mediterranea MMB-1] gi|326546915|gb|ADZ92135.1| Electron transport complex protein rnfB [Marinomonas mediterranea MMB-1] Length = 198 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 27/82 (32%), Gaps = 10/82 (12%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E A R E+ CI C C CP AI + + + Sbjct: 91 EALPLDGDVEESPAKRVAVIREDECIGCTKCIQACPVDAILGAAKQ----------MHTV 140 Query: 99 DMIKCIYCGLCQEACPVDAIVE 120 +C C LC E CPVD I Sbjct: 141 IADECTGCDLCVEPCPVDCIDM 162 >gi|308274764|emb|CBX31363.1| hypothetical protein N47_E48750 [uncultured Desulfobacterium sp.] Length = 1412 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 6/62 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++CI C LC ICP G D + R C CGLC +CP AI Sbjct: 1341 DAQKCIGCGLCAEICPFG------GIIMEDFEGKGQRAKNVPASCKGCGLCAASCPQKAI 1394 Query: 119 VE 120 Sbjct: 1395 DM 1396 Score = 42.0 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 +D KCI CGLC E CP I+ +FE Sbjct: 1339 QVDAQKCIGCGLCAEICPFGGIIM-EDFE 1366 Score = 35.5 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 16/35 (45%), Gaps = 3/35 (8%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 ID+ KC CG C + CPV ++ R+ Sbjct: 43 IDLSKCTSCGDCAKVCPVT---LPNEYDETLSERK 74 >gi|302387727|ref|YP_003823549.1| Ferredoxin hydrogenase [Clostridium saccharolyticum WM1] gi|302198355|gb|ADL05926.1| Ferredoxin hydrogenase [Clostridium saccharolyticum WM1] Length = 483 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110 ++C C C CP AI + P + D ID KCI CG C Sbjct: 125 YIDPDKCKECGKCSQACPYNAIADLTRPCKKSCPVDAITMDENGIVVIDESKCIQCGACI 184 Query: 111 EACPVDAI 118 CP AI Sbjct: 185 HGCPFGAI 192 >gi|237708078|ref|ZP_04538559.1| pyruvate-flavodoxin oxidoreductase [Bacteroides sp. 9_1_42FAA] gi|229457906|gb|EEO63627.1| pyruvate-flavodoxin oxidoreductase [Bacteroides sp. 9_1_42FAA] Length = 1181 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 31/90 (34%), Gaps = 15/90 (16%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGP 84 E+G+ RG A N E CI C C +CP A Sbjct: 667 EQGTAQYEKRGVAAFVPEWN-AENCIQCNKCAYVCPHASIRPFVLDAEEQKGANFETLKA 725 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 T R +D++ C+ CG C + CP Sbjct: 726 VGKQFDGMTFRIQVDVLDCLGCGNCADVCP 755 >gi|237724775|ref|ZP_04555256.1| pyruvate-flavodoxin oxidoreductase [Bacteroides sp. D4] gi|229436970|gb|EEO47047.1| pyruvate-flavodoxin oxidoreductase [Bacteroides dorei 5_1_36/D4] Length = 1175 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 31/90 (34%), Gaps = 15/90 (16%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGP 84 E+G+ RG A N E CI C C +CP A Sbjct: 667 EQGTAQYEKRGVAAFVPEWN-AENCIQCNKCAYVCPHASIRPFVLDAEEQKGANFETLKA 725 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 T R +D++ C+ CG C + CP Sbjct: 726 VGKQFDGMTFRIQVDVLDCLGCGNCADVCP 755 >gi|296140639|ref|YP_003647882.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Tsukamurella paurometabola DSM 20162] gi|296028773|gb|ADG79543.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Tsukamurella paurometabola DSM 20162] Length = 510 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 26/77 (33%), Gaps = 5/77 (6%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C + C CP I G +D C+ CG C ACP Sbjct: 1 MPHVITQSCCSDAACTFACPVNCIHPTPDE---PGFATAEMLYVDPTTCVDCGACVTACP 57 Query: 115 VDAIVEGPNFEFATETR 131 VDAI GP E + Sbjct: 58 VDAI--GPAHRLPEEHK 72 >gi|261418787|ref|YP_003252469.1| formate dehydrogenase, subunit alpha [Geobacillus sp. Y412MC61] gi|319765603|ref|YP_004131104.1| formate dehydrogenase, subunit alpha [Geobacillus sp. Y412MC52] gi|261375244|gb|ACX77987.1| formate dehydrogenase, alpha subunit [Geobacillus sp. Y412MC61] gi|317110469|gb|ADU92961.1| formate dehydrogenase, alpha subunit [Geobacillus sp. Y412MC52] Length = 987 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 27/83 (32%), Gaps = 3/83 (3%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---YD 97 + + Y +CIAC C C + R V Sbjct: 129 RPKVDPSEVDMSHPFYRYDPNQCIACGQCVEACQNLQVNETLSIDWEAERPRVVWDGGVP 188 Query: 98 IDMIKCIYCGLCQEACPVDAIVE 120 I+ C+ CG C CP +A++E Sbjct: 189 INESSCVSCGHCVTVCPCNALME 211 Score = 38.5 bits (88), Expect = 0.28, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q + Y D + Sbjct: 91 RLLENHLLYCTVCDNNNGNCKLHNTAEMMQIEHQTYPYRPKVDPSEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C EAC Sbjct: 151 CIACGQCVEAC 161 >gi|90412211|ref|ZP_01220217.1| anaerobic sulfite reductase subunit C [Photobacterium profundum 3TCK] gi|90326935|gb|EAS43320.1| anaerobic sulfite reductase subunit C [Photobacterium profundum 3TCK] Length = 335 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 27/87 (31%), Gaps = 8/87 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + + G + + ERCI C C +C A S Sbjct: 153 CPNDCAKANMADFGILGIAQIDFKSERCIGCGACVKVCSQHAANCLSIKHGKATKEV--- 209 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGP 122 KCI CG C ACP A P Sbjct: 210 -----SKCIGCGECVLACPTLAWQRNP 231 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 14/47 (29%), Gaps = 1/47 (2%) Query: 68 LCEAICPAQAITIESGPRC-HDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + A + G + D +CI CG C + C Sbjct: 144 YHLKLVLAGCPNDCAKANMADFGILGIAQIDFKSERCIGCGACVKVC 190 >gi|21224861|ref|NP_630640.1| respiratory chain oxidoreductase [Streptomyces coelicolor A3(2)] gi|289767859|ref|ZP_06527237.1| respiratory chain oxidoreductase [Streptomyces lividans TK24] gi|4007677|emb|CAA22363.1| putative respiratory chain oxidoreductase [Streptomyces coelicolor A3(2)] gi|289698058|gb|EFD65487.1| respiratory chain oxidoreductase [Streptomyces lividans TK24] Length = 286 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 4/75 (5%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQE 111 Y +CI C C C Q + G + + + C+YCG C E Sbjct: 145 YVRDYGKCILCYKCVDACGDQWQNSFAISVAGRGFDARISVEQDGPLTDSACVYCGNCIE 204 Query: 112 ACPVDAIVEGPNFEF 126 CP A+ F+ Sbjct: 205 VCPTGALSFKSEFDM 219 >gi|87303125|ref|ZP_01085923.1| pyruvate flavodoxin oxidoreductase [Synechococcus sp. WH 5701] gi|87282292|gb|EAQ74252.1| pyruvate flavodoxin oxidoreductase [Synechococcus sp. WH 5701] Length = 1190 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 28/90 (31%), Gaps = 24/90 (26%) Query: 58 NGEERCIACKLCEAICPAQAITIE----------------SGPRCHDGTRRTVRYDIDMI 101 ++ C+ C C +CP AI + + R + + + Sbjct: 696 WDDDICVQCGKCVMVCPHAAIRAKVVEPAALADAPEGFASTAARDPHWSGLSFTLQVAGE 755 Query: 102 KCIYCGLCQEACPVD--------AIVEGPN 123 C CGLC E CP AI P Sbjct: 756 DCTGCGLCVEVCPARDRTEPRHKAINMAPQ 785 >gi|326203038|ref|ZP_08192904.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium papyrosolvens DSM 2782] gi|325986684|gb|EGD47514.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium papyrosolvens DSM 2782] Length = 287 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 9/70 (12%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G + ++ CI C LCE C AITI + + C YCG Sbjct: 152 GVKGAVKPNWNKDNCIYCGLCENACRHGAITINKTAKE---------FSYAASACKYCGR 202 Query: 109 CQEACPVDAI 118 C + CP A Sbjct: 203 CVKVCPKGAW 212 Score = 33.9 bits (76), Expect = 8.3, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 21/58 (36%), Gaps = 6/58 (10%) Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG---PNFEFA 127 C + E G + + CIYCGLC+ AC AI F +A Sbjct: 139 CSNNCLKAEENDLGVKGAVKPNW---NKDNCIYCGLCENACRHGAITINKTAKEFSYA 193 >gi|212691873|ref|ZP_03300001.1| hypothetical protein BACDOR_01368 [Bacteroides dorei DSM 17855] gi|265756228|ref|ZP_06090557.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides sp. 3_1_33FAA] gi|212665545|gb|EEB26117.1| hypothetical protein BACDOR_01368 [Bacteroides dorei DSM 17855] gi|263233819|gb|EEZ19428.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides sp. 3_1_33FAA] Length = 1181 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 31/90 (34%), Gaps = 15/90 (16%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGP 84 E+G+ RG A N E CI C C +CP A Sbjct: 667 EQGTAQYEKRGVAAFVPEWN-AENCIQCNKCAYVCPHASIRPFVLDAEEQKGANFETLKA 725 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 T R +D++ C+ CG C + CP Sbjct: 726 VGKQFDGMTFRIQVDVLDCLGCGNCADVCP 755 >gi|92114243|ref|YP_574171.1| electron transport complex, RnfABCDGE type, B subunit [Chromohalobacter salexigens DSM 3043] gi|91797333|gb|ABE59472.1| electron transport complex, RnfABCDGE type, B subunit [Chromohalobacter salexigens DSM 3043] Length = 335 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 30/73 (41%), Gaps = 11/73 (15%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 CI C C CP AI + + + +C C LC CPVD I Sbjct: 83 ECIGCTKCIQACPVDAILGAAKQ----------MHTVIAGECTGCELCVAPCPVDCIDIL 132 Query: 122 PNFEF-ATETRQE 133 P+ E+ A ETR + Sbjct: 133 PHPEWVAAETRAQ 145 Score = 38.2 bits (87), Expect = 0.39, Method: Composition-based stats. Identities = 12/21 (57%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 I +CI C C +ACPVDAI Sbjct: 79 IREAECIGCTKCIQACPVDAI 99 >gi|1709284|sp|P19543|NIFJ_ENTAG RecName: Full=Pyruvate-flavodoxin oxidoreductase gi|469077|emb|CAA55302.1| nifJ [Pantoea agglomerans] gi|1480137|emb|CAA68011.1| nifJ [Pantoea agglomerans] Length = 1173 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 30/96 (31%), Gaps = 16/96 (16%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHD 88 TS + A+ ++C C C ICP A S R Sbjct: 670 TSAYEKRGVAINVPVWQTDKCTQCNQCAFICPHAAIRPVLISEEERQNAPAGFSAKRASG 729 Query: 89 GTRRTVRYDIDMIKCIYCGLCQEACPV--DAIVEGP 122 R + + C CG C + CPV A+ P Sbjct: 730 TEDAWYRLAVSPLDCSGCGNCADVCPVKGKALSMQP 765 >gi|126439611|ref|YP_001058225.1| ferredoxin [Burkholderia pseudomallei 668] gi|126219104|gb|ABN82610.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia pseudomallei 668] Length = 290 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 27/81 (33%), Gaps = 10/81 (12%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 + E A E+ CI C LC CP AI + I + Sbjct: 66 PLNQAHGVERARPVAFIDEQLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVVE 115 Query: 102 KCIYCGLCQEACPVDAIVEGP 122 C C LC CPVD I P Sbjct: 116 LCTGCDLCVPPCPVDCIAMIP 136 >gi|323481228|gb|ADX80667.1| pyruvate:ferredoxin oxidoreductase [Enterococcus faecalis 62] Length = 1229 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 28/91 (30%), Gaps = 16/91 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96 AL RC C C +CP AI R Sbjct: 681 VALEVPEWISNRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 740 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125 + + C CGLC EACP A+V P E Sbjct: 741 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 771 >gi|315161346|gb|EFU05363.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX0645] Length = 1243 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 28/91 (30%), Gaps = 16/91 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96 AL RC C C +CP AI R Sbjct: 695 VALEVPEWISNRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 754 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125 + + C CGLC EACP A+V P E Sbjct: 755 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 785 >gi|312902871|ref|ZP_07762075.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX0635] gi|310633925|gb|EFQ17208.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX0635] gi|315577169|gb|EFU89360.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX0630] Length = 1243 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 28/91 (30%), Gaps = 16/91 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96 AL RC C C +CP AI R Sbjct: 695 VALEVPEWISNRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 754 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125 + + C CGLC EACP A+V P E Sbjct: 755 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 785 >gi|307272712|ref|ZP_07553959.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX0855] gi|307276090|ref|ZP_07557223.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX2134] gi|306507420|gb|EFM76557.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX2134] gi|306510326|gb|EFM79349.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX0855] Length = 1243 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 28/91 (30%), Gaps = 16/91 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96 AL RC C C +CP AI R Sbjct: 695 VALEVPEWISNRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 754 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125 + + C CGLC EACP A+V P E Sbjct: 755 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 785 >gi|295113334|emb|CBL31971.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [Enterococcus sp. 7L76] Length = 1229 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 28/91 (30%), Gaps = 16/91 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96 AL RC C C +CP AI R Sbjct: 681 VALEVPEWISNRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 740 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125 + + C CGLC EACP A+V P E Sbjct: 741 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 771 >gi|260913866|ref|ZP_05920340.1| electron transport complex [Pasteurella dagmatis ATCC 43325] gi|260631953|gb|EEX50130.1| electron transport complex [Pasteurella dagmatis ATCC 43325] Length = 197 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 25/79 (31%), Gaps = 10/79 (12%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 + G+ A EE CI C C CP AI + + I Sbjct: 93 PPATDVEGDPAPMVAFIDEEMCIGCTKCIQACPVDAIIGTNK----------AMHTIIPD 142 Query: 102 KCIYCGLCQEACPVDAIVE 120 C C LC CP D I Sbjct: 143 LCTGCELCVPPCPTDCISM 161 Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 30/78 (38%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 P + + +CI + A+ + +E +G + ID CI Sbjct: 56 PGCKPYAEAIANGDDITKCIPGGQTVIVNIAELMGVEPPATDVEGDPAPMVAFIDEEMCI 115 Query: 105 YCGLCQEACPVDAIVEGP 122 C C +ACPVDAI+ Sbjct: 116 GCTKCIQACPVDAIIGTN 133 >gi|288930542|ref|YP_003434602.1| methyl-viologen-reducing hydrogenase subunit delta [Ferroglobus placidus DSM 10642] gi|288892790|gb|ADC64327.1| methyl-viologen-reducing hydrogenase delta subunit [Ferroglobus placidus DSM 10642] Length = 777 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 27/77 (35%), Positives = 36/77 (46%), Gaps = 13/77 (16%) Query: 47 FRGEHALRRY--PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 F GE Y EE+CI C++CE +C A+T E+ ID C+ Sbjct: 558 FGGEAEFDPYNAYVNEEKCIGCRICEEVCNFNAVTFENKKA-----------KIDPNACV 606 Query: 105 YCGLCQEACPVDAIVEG 121 CG+C +CP DAI G Sbjct: 607 MCGVCAASCPADAIDLG 623 Score = 33.9 bits (76), Expect = 8.3, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 26/83 (31%), Gaps = 8/83 (9%) Query: 46 RFRGEHALRRYPNGEERCIAC-KLCEAICPAQAITIESGPRCHDGTRRTVRYD------- 97 F+ + E +C C C ++CP + Sbjct: 226 NFKVKVRKHPRYVDENKCKGCIDDCSSVCPVEVPNEFDYTIGVRKAIYLPIPQSTPLYAA 285 Query: 98 IDMIKCIYCGLCQEACPVDAIVE 120 ID CI C LC++AC A+ Sbjct: 286 IDWEHCIGCRLCEKACEPKAVDF 308 >gi|257416474|ref|ZP_05593468.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Enterococcus faecalis AR01/DG] gi|257158302|gb|EEU88262.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Enterococcus faecalis ARO1/DG] Length = 1223 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 28/91 (30%), Gaps = 16/91 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96 AL RC C C +CP AI R Sbjct: 675 VALEVPEWISNRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 734 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125 + + C CGLC EACP A+V P E Sbjct: 735 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 765 >gi|257090427|ref|ZP_05584788.1| pyruvate decarboxylase [Enterococcus faecalis CH188] gi|256999239|gb|EEU85759.1| pyruvate decarboxylase [Enterococcus faecalis CH188] Length = 1223 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 28/91 (30%), Gaps = 16/91 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96 AL RC C C +CP AI R Sbjct: 675 VALEVPEWISNRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 734 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125 + + C CGLC EACP A+V P E Sbjct: 735 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 765 >gi|256963438|ref|ZP_05567609.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis HIP11704] gi|256953934|gb|EEU70566.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis HIP11704] Length = 1223 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 28/91 (30%), Gaps = 16/91 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96 AL RC C C +CP AI R Sbjct: 675 VALEVPEWISNRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 734 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125 + + C CGLC EACP A+V P E Sbjct: 735 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 765 >gi|256619570|ref|ZP_05476416.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Enterococcus faecalis ATCC 4200] gi|256599097|gb|EEU18273.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Enterococcus faecalis ATCC 4200] Length = 1223 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 28/91 (30%), Gaps = 16/91 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96 AL RC C C +CP AI R Sbjct: 675 VALEVPEWISNRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 734 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125 + + C CGLC EACP A+V P E Sbjct: 735 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 765 >gi|160935281|ref|ZP_02082663.1| hypothetical protein CLOBOL_00176 [Clostridium bolteae ATCC BAA-613] gi|158441639|gb|EDP19339.1| hypothetical protein CLOBOL_00176 [Clostridium bolteae ATCC BAA-613] Length = 507 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQ 110 +++CI C C +C +AI I+ P + DID KC+ CG+C Sbjct: 148 HINDDKCIKCGRCADVCSYKAIIIQERPCAAACGMDAISTDENGKADIDYDKCVSCGMCL 207 Query: 111 EACPVDAI 118 CP AI Sbjct: 208 VNCPFGAI 215 Score = 39.3 bits (90), Expect = 0.16, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 22/66 (33%), Gaps = 7/66 (10%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-------IDMIKCIYCGLCQEACPV 115 C AC + P + ++ D I+ KCI CG C + C Sbjct: 107 CNACHEKRVFVTDGCQGCLAHPCEEVCPKDAIKLDRTNGRSHINDDKCIKCGRCADVCSY 166 Query: 116 DAIVEG 121 AI+ Sbjct: 167 KAIIIQ 172 >gi|331010114|gb|EGH90170.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 290 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 10/75 (13%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 RG + E CI C C CP AI + + + + + +C C Sbjct: 76 RGAAPAQVAFIREAECIGCTKCIQACPVDAIVGAAK----------LMHTVIVDECTGCD 125 Query: 108 LCQEACPVDAIVEGP 122 LC CPVD I P Sbjct: 126 LCVAPCPVDCIEMHP 140 >gi|327479772|gb|AEA83082.1| electron transport complex protein RnfC [Pseudomonas stutzeri DSM 4166] Length = 827 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 2/97 (2%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C C CP + + G + CI CG C CP I Sbjct: 371 CIRCGECAEACPVS-LLPQQLHFFALGQEHEQLKAHHLFDCIECGACAYVCP-SNIPLVQ 428 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 + A +EL +++ ++ R+E R + Sbjct: 429 YYRAAKAEIRELEQKQQKAEHSKQRFELRQERLRRAE 465 >gi|313157248|gb|EFR56678.1| pyruvate synthase [Alistipes sp. HGB5] Length = 1177 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 31/99 (31%), Gaps = 16/99 (16%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ-------------AITIESGPR 85 E G+ + RG E CI C C +CP A +E Sbjct: 672 ENGTAAYEKRGIAVNVPEWK-IENCIQCNQCAYVCPHAVIRPFLATEAEAAASGVEWKQG 730 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACP--VDAIVEGP 122 + R I + C C C + CP A+V P Sbjct: 731 LGETKDYKFRIQISPLDCTGCSNCVDVCPAKEKALVMKP 769 >gi|308051297|ref|YP_003914863.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferrimonas balearica DSM 9799] gi|307633487|gb|ADN77789.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferrimonas balearica DSM 9799] Length = 562 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 9/74 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++C C C A+CP++A+ C+ CGLC+ ACP AI Sbjct: 426 DVDKCTLCMSCAALCPSRALMDGGDSPA---------LKFTEQACVQCGLCERACPEKAI 476 Query: 119 VEGPNFEFATETRQ 132 + E RQ Sbjct: 477 TLTSRIQLDREARQ 490 >gi|325678152|ref|ZP_08157782.1| electron transport complex, RnfABCDGE type, C subunit [Ruminococcus albus 8] gi|324110157|gb|EGC04343.1| electron transport complex, RnfABCDGE type, C subunit [Ruminococcus albus 8] Length = 421 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 1/56 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 G+ CI C C CPA + + +RT + CI CG C CP Sbjct: 343 GQTNCIRCGRCAKACPAGLMPMRIEKAVK-KRKRTELRRLRPDLCIGCGSCTYVCP 397 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 18/51 (35%) Query: 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134 G + +++ CI CG C +ACP + R EL Sbjct: 328 KPLESGGKGSLKVVGGQTNCIRCGRCAKACPAGLMPMRIEKAVKKRKRTEL 378 >gi|261414556|ref|YP_003248239.1| nitrite and sulphite reductase 4Fe-4S region [Fibrobacter succinogenes subsp. succinogenes S85] gi|261371012|gb|ACX73757.1| nitrite and sulphite reductase 4Fe-4S region [Fibrobacter succinogenes subsp. succinogenes S85] gi|302327419|gb|ADL26620.1| putative sulfite reductase [Fibrobacter succinogenes subsp. succinogenes S85] Length = 286 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 22/97 (22%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++CI C LC +C +AI IE+ D KC YCG C ++CP DA Sbjct: 163 DKCIGCGLCAKVCRKEAIKIENKKVIFDK-----------EKCNYCGRCYKSCPTDAWSH 211 Query: 121 GPNFEFA-----------TETRQELYYDKERLLNNGD 146 + + ET DK++LL+ D Sbjct: 212 IHGYIVSFGGLFGNNINKGETIIPFVEDKQKLLDICD 248 Score = 37.8 bits (86), Expect = 0.48, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 12/68 (17%) Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 C + E G + + KCI CGLC + C +AI + Sbjct: 138 CQNNCLKAEENDVGIKGAIKVDWLE---DKCIGCGLCAKVCRKEAIKIEN---------K 185 Query: 133 ELYYDKER 140 ++ +DKE+ Sbjct: 186 KVIFDKEK 193 >gi|288869697|ref|ZP_05975774.2| polyferredoxin protein FwdF [Methanobrevibacter smithii DSM 2374] gi|288861140|gb|EFC93438.1| polyferredoxin protein FwdF [Methanobrevibacter smithii DSM 2374] Length = 339 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 37/100 (37%), Gaps = 8/100 (8%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG----PRCHDGTRRTVRY 96 G P RG + C+ C LC CP A+++ + V Sbjct: 43 GPIVPIARGLIEMDLVSVTSNTCVLCGLCSVACPFDALSLTINGNDIKETGNYPVWEVES 102 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 +I+ CIYCG C CP D I+ +R++L Sbjct: 103 EINDDDCIYCGRCYSVCPRDTILFKREL----PSREDLVI 138 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 R + + E++C+ C +C +CPA AI++ + P + ++D KCIY Sbjct: 131 PSREDLVIGEISVDEDKCVYCSICSEMCPAGAISLTNNPEFSNDNLNNTI-EVDTSKCIY 189 Query: 106 CGLCQEACPVDAI 118 CG+C+ ACP DAI Sbjct: 190 CGVCKRACPQDAI 202 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ CI C C ++CP I +D KC+YC +C E CP AI Sbjct: 105 NDDDCIYCGRCYSVCPRDTILF-KRELPSREDLVIGEISVDEDKCVYCSICSEMCPAGAI 163 Query: 119 VEGPNFEFATET 130 N EF+ + Sbjct: 164 SLTNNPEFSNDN 175 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 4/85 (4%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDM 100 P F ++ +CI C +C+ CP AI + + I Sbjct: 169 PEFSNDNLNNTIEVDTSKCIYCGVCKRACPQDAIKAVCSTCMLQDQIKAPEINGTASILK 228 Query: 101 IKCIYCGLCQEACPVDAIVEGPNFE 125 C+ C C+E CPVD I FE Sbjct: 229 DGCVNCSWCKEVCPVDTINVTKPFE 253 Score = 42.4 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 32/76 (42%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R R+ + +RC+ C +C +CP ++ + G + C+ CG Sbjct: 10 RSGEETRKLSHNNDRCVGCGICTDVCPTSSLRLGPIVPIARGLIEMDLVSVTSNTCVLCG 69 Query: 108 LCQEACPVDAIVEGPN 123 LC ACP DA+ N Sbjct: 70 LCSVACPFDALSLTIN 85 Score = 38.5 bits (88), Expect = 0.31, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 11/79 (13%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + + + F G L + AC C+ +CP A+ I Sbjct: 241 CPVDTINVTKPFEGTLKLVETDESTCKGDACHACQDVCPCDAVEIIDNKA---------- 290 Query: 96 YDIDMIKCIYCGLCQEACP 114 I++ C CG C ACP Sbjct: 291 -TINLNYCNLCGACVNACP 308 Score = 33.5 bits (75), Expect = 8.7, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C C+ +CP I + + +GT + V D K C CQ+ CP DA+ Sbjct: 231 CVNCSWCKEVCPVDTINVT---KPFEGTLKLVETDESTCKGDACHACQDVCPCDAVEIID 287 Query: 123 N 123 N Sbjct: 288 N 288 >gi|198275821|ref|ZP_03208352.1| hypothetical protein BACPLE_01996 [Bacteroides plebeius DSM 17135] gi|198271450|gb|EDY95720.1| hypothetical protein BACPLE_01996 [Bacteroides plebeius DSM 17135] Length = 1185 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 27/81 (33%), Gaps = 15/81 (18%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG A N E CI C C +CP A T Sbjct: 676 RGVAAFVPEWN-PETCIQCNKCAYVCPHAAIRPFVLDAEEQAGANFPTLKAVGKQFDGMT 734 Query: 94 VRYDIDMIKCIYCGLCQEACP 114 R +D++ C+ CG C + CP Sbjct: 735 FRVQVDVMDCLGCGNCADVCP 755 Score = 33.9 bits (76), Expect = 7.4, Method: Composition-based stats. Identities = 8/20 (40%), Positives = 9/20 (45%) Query: 99 DMIKCIYCGLCQEACPVDAI 118 + CI C C CP AI Sbjct: 686 NPETCIQCNKCAYVCPHAAI 705 >gi|163758602|ref|ZP_02165689.1| putative dihydropyrimidine dehydrogenase [Hoeflea phototrophica DFL-43] gi|162283892|gb|EDQ34176.1| putative dihydropyrimidine dehydrogenase [Hoeflea phototrophica DFL-43] Length = 436 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 6/81 (7%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI C C A S +++ +C+ Sbjct: 330 QYLNLNYVTKAKIDQDLCIKCGRCHI-----ACEDTSHQAITSMVDGARHFEVMDDECVG 384 Query: 106 CGLCQEACPV-DAIVEGPNFE 125 C LC CPV D I E Sbjct: 385 CNLCVNVCPVDDCITMVQMTE 405 >gi|146281594|ref|YP_001171747.1| electron transport complex protein RnfC [Pseudomonas stutzeri A1501] gi|145569799|gb|ABP78905.1| electron transport complex protein rnfC [Pseudomonas stutzeri A1501] Length = 827 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 2/97 (2%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C C CP + + G + CI CG C CP I Sbjct: 371 CIRCGECAEACPVS-LLPQQLHFFALGQEHEQLKAHHLFDCIECGACAYVCP-SNIPLVQ 428 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 + A +EL +++ ++ R+E R + Sbjct: 429 YYRAAKAEIRELEQKQQKAEHSKQRFELRQERLRRAE 465 >gi|56387326|gb|AAV86075.1| uptake hydrogenase [Clostridium saccharoperbutylacetonicum ATCC 27021] Length = 624 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 27/70 (38%), Gaps = 10/70 (14%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 L+ C C C +CP AI+ + + ID KCI CG C Sbjct: 564 QKLKTILIDPSMCKGCSKCSKVCPVGAISG----------KIKEPFVIDQNKCIKCGACL 613 Query: 111 EACPVDAIVE 120 E CP AI E Sbjct: 614 ETCPFKAIKE 623 >gi|89098845|ref|ZP_01171726.1| YjgC [Bacillus sp. NRRL B-14911] gi|89086521|gb|EAR65641.1| YjgC [Bacillus sp. NRRL B-14911] Length = 989 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/99 (18%), Positives = 33/99 (33%), Gaps = 9/99 (9%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 ++ + PF + ++ Y ++CI C C C +T Sbjct: 119 TVKEM--KINHQSVPFAQKPYPAD----NSHPFYRYDPDQCILCGRCVEACQDVQVTETL 172 Query: 83 GPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPVDAI 118 R + + I+ C+ CG C CP +A+ Sbjct: 173 TIDWEREKPRVIWDNDVPINESSCVSCGHCSTVCPCNAM 211 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 22/69 (31%), Gaps = 9/69 (13%) Query: 54 RRYPNGEERCIAC----KLCEAICPA-----QAITIESGPRCHDGTRRTVRYDIDMIKCI 104 R N E C C CE ++ + + Y D +CI Sbjct: 95 RILTNHELYCTVCDYNNGGCEVHNTVKEMKINHQSVPFAQKPYPADNSHPFYRYDPDQCI 154 Query: 105 YCGLCQEAC 113 CG C EAC Sbjct: 155 LCGRCVEAC 163 >gi|120553869|ref|YP_958220.1| electron transport complex, RnfABCDGE type, B subunit [Marinobacter aquaeolei VT8] gi|120323718|gb|ABM18033.1| electron transport complex, RnfABCDGE type, B subunit [Marinobacter aquaeolei VT8] Length = 192 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 28/82 (34%), Gaps = 10/82 (12%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E E A R E+ CI C C CP AI + + + Sbjct: 92 EPQPLDAEHGVEQAKRVAVIREDECIGCTKCIQACPVDAILGAAK----------HMHTV 141 Query: 99 DMIKCIYCGLCQEACPVDAIVE 120 +C C LC E CPVD I Sbjct: 142 IESECTGCDLCVEPCPVDCIDM 163 >gi|134296514|ref|YP_001120249.1| ferredoxin [Burkholderia vietnamiensis G4] gi|134139671|gb|ABO55414.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia vietnamiensis G4] Length = 313 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 22/66 (33%), Gaps = 10/66 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C LC CP AI + I C C LC CPVD Sbjct: 104 FIDESLCIGCTLCLQACPVDAIIGAPKQ----------MHTIIEPLCTGCDLCVAPCPVD 153 Query: 117 AIVEGP 122 I P Sbjct: 154 CIAMVP 159 >gi|308049766|ref|YP_003913332.1| hydrogenase, Fe-only [Ferrimonas balearica DSM 9799] gi|307631956|gb|ADN76258.1| hydrogenase, Fe-only [Ferrimonas balearica DSM 9799] Length = 410 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 10/61 (16%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 +C C C+ CP AI SG + +D KC+ CG C CP DAI E Sbjct: 21 KCKGCDACKKFCPTGAIEGASGAA----------HRVDHDKCVGCGQCMINCPFDAIEET 70 Query: 122 P 122 Sbjct: 71 H 71 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 9/22 (40%), Positives = 12/22 (54%) Query: 97 DIDMIKCIYCGLCQEACPVDAI 118 +I KC C C++ CP AI Sbjct: 16 EIQAAKCKGCDACKKFCPTGAI 37 >gi|300869677|ref|YP_003784548.1| Fe-hydrogenase large subunit family protein [Brachyspira pilosicoli 95/1000] gi|300687376|gb|ADK30047.1| Fe-hydrogenase large subunit family protein [Brachyspira pilosicoli 95/1000] Length = 490 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 6/69 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGT------RRTVRYDIDMIKCIYCGLCQ 110 +CI C LC CP AI P + ID KCI+CG C Sbjct: 144 YIDSSKCINCGLCLKNCPYHAIIYIPVPCEESCPVGAINKNEQGKEVIDYHKCIFCGNCM 203 Query: 111 EACPVDAIV 119 CP A++ Sbjct: 204 RECPFSAMM 212 Score = 40.1 bits (92), Expect = 0.10, Method: Composition-based stats. Identities = 25/62 (40%), Positives = 28/62 (45%), Gaps = 12/62 (19%) Query: 63 CIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C AC + C CP AITI R ID KCI CGLC + CP AI+ Sbjct: 118 CQACLARPCMMNCPKNAITILDEKRA----------YIDSSKCINCGLCLKNCPYHAIIY 167 Query: 121 GP 122 P Sbjct: 168 IP 169 >gi|254883858|ref|ZP_05256568.1| pyruvate-flavodoxin oxidoreductase [Bacteroides sp. 4_3_47FAA] gi|254836651|gb|EET16960.1| pyruvate-flavodoxin oxidoreductase [Bacteroides sp. 4_3_47FAA] Length = 1163 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 31/90 (34%), Gaps = 15/90 (16%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGP 84 E+G+ RG A N E CI C C +CP A Sbjct: 667 EQGTAQYEKRGVAAFVPEWN-AENCIQCNKCAYVCPHASIRPFVLDAEEQKGADFETLKA 725 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 T R +D++ C+ CG C + CP Sbjct: 726 VGKQFDGMTFRIQVDVLDCLGCGNCADVCP 755 >gi|194289253|ref|YP_002005160.1| ferredoxin [Cupriavidus taiwanensis LMG 19424] gi|193223088|emb|CAQ69093.1| FERREDOXIN [4FE-4S] PROTEIN [Cupriavidus taiwanensis LMG 19424] Length = 273 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 26/84 (30%), Gaps = 10/84 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E P E E CI C LC CP AI + + + Sbjct: 64 EPLPLDPERGTEQPRAVARIDESLCIGCTLCIQACPVDAIAGAAKQ----------MHTV 113 Query: 99 DMIKCIYCGLCQEACPVDAIVEGP 122 C C LC CPVD I P Sbjct: 114 IPDLCTGCDLCVPPCPVDCIDMVP 137 >gi|51246738|ref|YP_066622.1| pyruvate-flavodoxin oxidoreductase [Desulfotalea psychrophila LSv54] gi|50877775|emb|CAG37615.1| probable pyruvate-flavodoxin oxidoreductase [Desulfotalea psychrophila LSv54] Length = 1180 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 31/93 (33%), Gaps = 17/93 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTV--------------RYDIDMIKCIYC 106 E CI C C +CP AI I+ + + C C Sbjct: 691 ENCIQCGQCSLVCPHAAIRIKVAQNLDNAPAGVKSLDAVGKNFKGSKFVLQVFTEDCCGC 750 Query: 107 GLCQEACP--VDAIVEGPN-FEFATETRQELYY 136 LC +ACP A+ N E A R E+ Y Sbjct: 751 TLCVDACPAKTKALKMIKNSEELAVVNRPEVQY 783 >gi|121613446|ref|YP_001001125.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Campylobacter jejuni subsp. jejuni 81-176] gi|167006018|ref|ZP_02271776.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Campylobacter jejuni subsp. jejuni 81-176] gi|87249626|gb|EAQ72585.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Campylobacter jejuni subsp. jejuni 81-176] Length = 1186 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 43/133 (32%), Gaps = 30/133 (22%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA------------------QAIT 79 FE G+T RG + CI C C ++CP Sbjct: 668 FEHGTTEYEKRGVGVMVPRWIE-ANCIQCNQCASVCPHAVIRPFLINDEEMANAPRGVKD 726 Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV--DAIVEGP--------NFEFATE 129 + G + + + + + C C LC CP ++V P E A Sbjct: 727 HALEAKGTKGEKLSFKIQVSPLDCTGCELCVHECPTKEKSLVMVPLQEEMDFGEQENADY 786 Query: 130 TRQELYYDKERLL 142 +E+ Y K+ +L Sbjct: 787 LFKEITY-KDDIL 798 >gi|332993969|gb|AEF04024.1| electron transport complex protein RnfC [Alteromonas sp. SN2] Length = 866 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 36/115 (31%), Gaps = 3/115 (2%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P K + + L N E CI C C CP + + Sbjct: 358 IPVVKTTNCLLVPSKKELV-DDNAERPCIRCSACADACPVSLLPQQMFWHAKAKE-YDKA 415 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWES 150 D D+ CI CG C CP I + A + +K + R+E+ Sbjct: 416 EDYDLFDCIECGACAYVCP-SEIPLVHYYRQAKSEIRLQRDEKNKAEKAKQRFEA 469 >gi|310828875|ref|YP_003961232.1| hypothetical protein ELI_3307 [Eubacterium limosum KIST612] gi|308740609|gb|ADO38269.1| hypothetical protein ELI_3307 [Eubacterium limosum KIST612] Length = 586 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 38/97 (39%), Gaps = 15/97 (15%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 LRY F+ + + K + AL Y EE+C+ C C CP +AI+ Sbjct: 502 TTLRY-FRNEYEDHIYKHKCTAHSC----KALITYSIDEEKCVGCTRCAKNCPVEAISGA 556 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + ID KCI CG C C DA+ Sbjct: 557 PKK----------VHVIDQEKCIKCGKCASVCKFDAV 583 >gi|170768728|ref|ZP_02903181.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia albertii TW07627] gi|170122276|gb|EDS91207.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia albertii TW07627] Length = 192 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI + + + C C LC + CP I Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RSMHTVMSELCTGCNLCVDPCPTQCI 162 Query: 119 VEGPNFEFATETRQEL 134 P E + +L Sbjct: 163 SLQPVAETPDSWKWDL 178 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C C +ACPVDAI Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132 >gi|154421999|ref|XP_001584012.1| TvhydB protein [Trichomonas vaginalis G3] gi|121918257|gb|EAY23026.1| TvhydB protein, putative [Trichomonas vaginalis G3] Length = 470 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 22/70 (31%), Gaps = 6/70 (8%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK------CIYCGLCQEA 112 +CI C+ C C A + ++ K CI CG C Sbjct: 25 DMHKCINCQACVRACKNVAGQSVLKSVKINEGKKKGVVQTVTGKLLAETNCIGCGQCTLV 84 Query: 113 CPVDAIVEGP 122 CP AI E Sbjct: 85 CPTQAIHEKD 94 >gi|121534265|ref|ZP_01666089.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Thermosinus carboxydivorans Nor1] gi|121307035|gb|EAX47953.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Thermosinus carboxydivorans Nor1] Length = 1173 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 29/96 (30%), Gaps = 16/96 (16%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHD 88 + + A+ ++CI C C +CP A + + Sbjct: 672 ITAWEKRGIAIEVPVWQADKCIQCNQCSFVCPHAVIRPLLINSDELKNAPSGFTTKEAIG 731 Query: 89 GTRRTVRYDIDMIKCIYCGLCQEACP--VDAIVEGP 122 I + C CG C + CP A++ P Sbjct: 732 YPGLFFHLAISALDCTGCGNCVDVCPAKEKALIMKP 767 >gi|83718953|ref|YP_441525.1| ferredoxin [Burkholderia thailandensis E264] gi|257139787|ref|ZP_05588049.1| ferredoxin [Burkholderia thailandensis E264] gi|83652778|gb|ABC36841.1| iron-sulfur cluster-binding protein [Burkholderia thailandensis E264] Length = 282 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 23/64 (35%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ CI C LC CP AI + I C C LC CPVD I Sbjct: 83 DEQLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVAELCTGCDLCVPPCPVDCI 132 Query: 119 VEGP 122 P Sbjct: 133 AMIP 136 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 14/21 (66%), Positives = 15/21 (71%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C LC +ACPVDAI Sbjct: 82 IDEQLCIGCTLCMQACPVDAI 102 >gi|57238499|ref|YP_179630.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Campylobacter jejuni RM1221] gi|157415700|ref|YP_001482956.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Campylobacter jejuni subsp. jejuni 81116] gi|57167303|gb|AAW36082.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Campylobacter jejuni RM1221] gi|157386664|gb|ABV52979.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Campylobacter jejuni subsp. jejuni 81116] gi|307748341|gb|ADN91611.1| Pyruvate-flavodoxin oxidoreductase [Campylobacter jejuni subsp. jejuni M1] gi|315058930|gb|ADT73259.1| Pyruvate-flavodoxin oxidoreductase [Campylobacter jejuni subsp. jejuni S3] Length = 1186 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 43/133 (32%), Gaps = 30/133 (22%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA------------------QAIT 79 FE G+T RG + CI C C ++CP Sbjct: 668 FEHGTTEYEKRGVGVMVPRWIE-ANCIQCNQCASVCPHAVIRPFLINDEEMANAPRGVKD 726 Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV--DAIVEGP--------NFEFATE 129 + G + + + + + C C LC CP ++V P E A Sbjct: 727 HALEAKGTKGEKLSFKIQVSPLDCTGCELCVHECPTKEKSLVMVPLQEEMDFGEQENADY 786 Query: 130 TRQELYYDKERLL 142 +E+ Y K+ +L Sbjct: 787 LFKEITY-KDDIL 798 >gi|57169058|ref|ZP_00368185.1| pyruvate ferredoxin/flavodoxin oxidoreductase family protein [Campylobacter coli RM2228] gi|305432267|ref|ZP_07401430.1| pyruvate:ferredoxin oxidoreductase [Campylobacter coli JV20] gi|57019516|gb|EAL56207.1| pyruvate ferredoxin/flavodoxin oxidoreductase family protein [Campylobacter coli RM2228] gi|304444615|gb|EFM37265.1| pyruvate:ferredoxin oxidoreductase [Campylobacter coli JV20] Length = 1186 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 28/147 (19%), Positives = 48/147 (32%), Gaps = 30/147 (20%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA------------------QAIT 79 FE G+T RG + CI C C ++CP Sbjct: 668 FEHGTTEYEKRGVGVMVPRWIE-ANCIQCNQCASVCPHAVIRPFLINDEEMAKAPRGVKD 726 Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV--DAIVEGP--------NFEFATE 129 + G + + + + + C C LC CP ++V P E A Sbjct: 727 HALEAKGTKGEKLSFKIQVSPLDCTGCELCVHECPTKEKSLVMVPLQEEMDFGEQENADY 786 Query: 130 TRQELYYDKERLLNNGDRWESEIVRNI 156 +E+ Y K+ +LN ++ + + Sbjct: 787 LFKEITY-KDDILNKESTKGAQFAQPL 812 >gi|15831591|ref|NP_310364.1| electron transport complex protein RnfB [Escherichia coli O157:H7 str. Sakai] gi|74312045|ref|YP_310464.1| electron transport complex protein RnfB [Shigella sonnei Ss046] gi|91210841|ref|YP_540827.1| electron transport complex protein RnfB [Escherichia coli UTI89] gi|117623814|ref|YP_852727.1| electron transport complex protein RnfB [Escherichia coli APEC O1] gi|157157455|ref|YP_001462917.1| electron transport complex protein RnfB [Escherichia coli E24377A] gi|168750558|ref|ZP_02775580.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli O157:H7 str. EC4113] gi|168757456|ref|ZP_02782463.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli O157:H7 str. EC4401] gi|168763668|ref|ZP_02788675.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli O157:H7 str. EC4501] gi|168771170|ref|ZP_02796177.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli O157:H7 str. EC4486] gi|168775858|ref|ZP_02800865.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli O157:H7 str. EC4196] gi|168783451|ref|ZP_02808458.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli O157:H7 str. EC4076] gi|168789465|ref|ZP_02814472.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli O157:H7 str. EC869] gi|168800888|ref|ZP_02825895.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli O157:H7 str. EC508] gi|170682878|ref|YP_001743626.1| electron transport complex protein RnfB [Escherichia coli SMS-3-5] gi|191165916|ref|ZP_03027753.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli B7A] gi|191173438|ref|ZP_03034966.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli F11] gi|193064973|ref|ZP_03046049.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli E22] gi|194425888|ref|ZP_03058444.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli B171] gi|195939017|ref|ZP_03084399.1| electron transport complex protein RnfB [Escherichia coli O157:H7 str. EC4024] gi|208810550|ref|ZP_03252426.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli O157:H7 str. EC4206] gi|208816778|ref|ZP_03257898.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli O157:H7 str. EC4045] gi|208820538|ref|ZP_03260858.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli O157:H7 str. EC4042] gi|209397589|ref|YP_002270698.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli O157:H7 str. EC4115] gi|209918941|ref|YP_002293025.1| electron transport complex protein RnfB [Escherichia coli SE11] gi|217328786|ref|ZP_03444867.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli O157:H7 str. TW14588] gi|218558499|ref|YP_002391412.1| electron transport complex protein RnfB [Escherichia coli S88] gi|218695191|ref|YP_002402858.1| electron transport complex protein RnfB [Escherichia coli 55989] gi|218699804|ref|YP_002407433.1| electron transport complex protein RnfB [Escherichia coli IAI39] gi|237705571|ref|ZP_04536052.1| electron transport complex protein rnfB [Escherichia sp. 3_2_53FAA] gi|254793245|ref|YP_003078082.1| electron transport complex protein RnfB [Escherichia coli O157:H7 str. TW14359] gi|260843934|ref|YP_003221712.1| putative iron-sulfur protein [Escherichia coli O103:H2 str. 12009] gi|261227927|ref|ZP_05942208.1| inner membrane iron-sulfur protein in SoxR-reducing complex [Escherichia coli O157:H7 str. FRIK2000] gi|261258338|ref|ZP_05950871.1| putative iron-sulfur protein [Escherichia coli O157:H7 str. FRIK966] gi|291282760|ref|YP_003499578.1| Electron transport complex protein rnfB [Escherichia coli O55:H7 str. CB9615] gi|293414945|ref|ZP_06657588.1| electron transport complex protein rnfB [Escherichia coli B185] gi|293446003|ref|ZP_06662425.1| electron transport complex protein RnfB [Escherichia coli B088] gi|300821501|ref|ZP_07101648.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli MS 119-7] gi|300907219|ref|ZP_07124881.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli MS 84-1] gi|300927477|ref|ZP_07143190.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli MS 182-1] gi|300990136|ref|ZP_07179143.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli MS 200-1] gi|301303140|ref|ZP_07209266.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli MS 124-1] gi|301329556|ref|ZP_07222339.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli MS 78-1] gi|306813408|ref|ZP_07447598.1| electron transport complex protein RnfB [Escherichia coli NC101] gi|309793393|ref|ZP_07687820.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli MS 145-7] gi|331653023|ref|ZP_08354028.1| electron transport complex protein RnfB [Escherichia coli M718] gi|331657597|ref|ZP_08358559.1| electron transport complex protein RnfB [Escherichia coli TA206] gi|331668305|ref|ZP_08369153.1| electron transport complex protein RnfB [Escherichia coli TA271] gi|331673197|ref|ZP_08373965.1| electron transport complex protein RnfB [Escherichia coli TA280] gi|331677493|ref|ZP_08378168.1| electron transport complex protein RnfB [Escherichia coli H591] gi|331683135|ref|ZP_08383736.1| electron transport complex protein RnfB [Escherichia coli H299] gi|17368140|sp|P58323|RNFB_ECO57 RecName: Full=Electron transport complex protein rnfB gi|123266074|sp|Q1RBG8|RNFB_ECOUT RecName: Full=Electron transport complex protein rnfB gi|123759604|sp|Q3Z1Y3|RNFB_SHISS RecName: Full=Electron transport complex protein rnfB gi|166225082|sp|A1ABH3|RNFB_ECOK1 RecName: Full=Electron transport complex protein rnfB gi|166991041|sp|A7ZM88|RNFB_ECO24 RecName: Full=Electron transport complex protein rnfB gi|226735411|sp|B7M9Y2|RNFB_ECO45 RecName: Full=Electron transport complex protein rnfB gi|226735412|sp|B5Z462|RNFB_ECO5E RecName: Full=Electron transport complex protein rnfB gi|226735413|sp|B7NU05|RNFB_ECO7I RecName: Full=Electron transport complex protein rnfB gi|226735417|sp|B6IB63|RNFB_ECOSE RecName: Full=Electron transport complex protein rnfB gi|226735418|sp|B1LEQ8|RNFB_ECOSM RecName: Full=Electron transport complex protein rnfB gi|254807924|sp|B7L5I1|RNFB_ECO55 RecName: Full=Electron transport complex protein rnfB gi|13361804|dbj|BAB35760.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai] gi|73855522|gb|AAZ88229.1| conserved hypothetical protein [Shigella sonnei Ss046] gi|91072415|gb|ABE07296.1| electron transport complex protein RnfB [Escherichia coli UTI89] gi|115512938|gb|ABJ01013.1| electron transport complex protein RnfB [Escherichia coli APEC O1] gi|157079485|gb|ABV19193.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli E24377A] gi|170520596|gb|ACB18774.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli SMS-3-5] gi|187768706|gb|EDU32550.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli O157:H7 str. EC4196] gi|188015258|gb|EDU53380.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli O157:H7 str. EC4113] gi|188999203|gb|EDU68189.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli O157:H7 str. EC4076] gi|189355528|gb|EDU73947.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli O157:H7 str. EC4401] gi|189359994|gb|EDU78413.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli O157:H7 str. EC4486] gi|189366182|gb|EDU84598.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli O157:H7 str. EC4501] gi|189370933|gb|EDU89349.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli O157:H7 str. EC869] gi|189376873|gb|EDU95289.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli O157:H7 str. EC508] gi|190904047|gb|EDV63759.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli B7A] gi|190906280|gb|EDV65891.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli F11] gi|192927460|gb|EDV82078.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli E22] gi|194415943|gb|EDX32209.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli B171] gi|208725066|gb|EDZ74773.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli O157:H7 str. EC4206] gi|208731121|gb|EDZ79810.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli O157:H7 str. EC4045] gi|208740661|gb|EDZ88343.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli O157:H7 str. EC4042] gi|209158989|gb|ACI36422.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli O157:H7 str. EC4115] gi|209769658|gb|ACI83141.1| hypothetical protein ECs2337 [Escherichia coli] gi|209769660|gb|ACI83142.1| hypothetical protein ECs2337 [Escherichia coli] gi|209769662|gb|ACI83143.1| hypothetical protein ECs2337 [Escherichia coli] gi|209769664|gb|ACI83144.1| hypothetical protein ECs2337 [Escherichia coli] gi|209769666|gb|ACI83145.1| hypothetical protein ECs2337 [Escherichia coli] gi|209912200|dbj|BAG77274.1| conserved hypothetical protein [Escherichia coli SE11] gi|217318133|gb|EEC26560.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli O157:H7 str. TW14588] gi|218351923|emb|CAU97648.1| putative iron-sulfur protein [Escherichia coli 55989] gi|218365268|emb|CAR02989.1| putative iron-sulfur protein [Escherichia coli S88] gi|218369790|emb|CAR17561.1| putative iron-sulfur protein [Escherichia coli IAI39] gi|222033387|emb|CAP76128.1| electron transport complex protein rnfB [Escherichia coli LF82] gi|226900328|gb|EEH86587.1| electron transport complex protein rnfB [Escherichia sp. 3_2_53FAA] gi|254592645|gb|ACT72006.1| inner membrane iron-sulfur protein in SoxR-reducing complex [Escherichia coli O157:H7 str. TW14359] gi|257759081|dbj|BAI30578.1| predicted iron-sulfur protein [Escherichia coli O103:H2 str. 12009] gi|284921552|emb|CBG34624.1| electron transport complex protein [Escherichia coli 042] gi|290762633|gb|ADD56594.1| Electron transport complex protein rnfB [Escherichia coli O55:H7 str. CB9615] gi|291322833|gb|EFE62261.1| electron transport complex protein RnfB [Escherichia coli B088] gi|291432593|gb|EFF05572.1| electron transport complex protein rnfB [Escherichia coli B185] gi|294492581|gb|ADE91337.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli IHE3034] gi|300305771|gb|EFJ60291.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli MS 200-1] gi|300401023|gb|EFJ84561.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli MS 84-1] gi|300416581|gb|EFJ99891.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli MS 182-1] gi|300526004|gb|EFK47073.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli MS 119-7] gi|300841549|gb|EFK69309.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli MS 124-1] gi|300844325|gb|EFK72085.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli MS 78-1] gi|305853153|gb|EFM53593.1| electron transport complex protein RnfB [Escherichia coli NC101] gi|307626886|gb|ADN71190.1| electron transport complex protein RnfB [Escherichia coli UM146] gi|308122980|gb|EFO60242.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli MS 145-7] gi|312946228|gb|ADR27055.1| electron transport complex protein RnfB [Escherichia coli O83:H1 str. NRG 857C] gi|315257572|gb|EFU37540.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli MS 85-1] gi|315286323|gb|EFU45759.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli MS 110-3] gi|315297364|gb|EFU56644.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli MS 16-3] gi|320174165|gb|EFW49330.1| Electron transport complex protein RnfB [Shigella dysenteriae CDC 74-1112] gi|320186300|gb|EFW61036.1| Electron transport complex protein RnfB [Shigella flexneri CDC 796-83] gi|320188314|gb|EFW62976.1| Electron transport complex protein RnfB [Escherichia coli O157:H7 str. EC1212] gi|320195474|gb|EFW70099.1| Electron transport complex protein RnfB [Escherichia coli WV_060327] gi|320197811|gb|EFW72419.1| Electron transport complex protein RnfB [Escherichia coli EC4100B] gi|320647299|gb|EFX16107.1| electron transport complex protein RnfB [Escherichia coli O157:H- str. 493-89] gi|320652593|gb|EFX20862.1| electron transport complex protein RnfB [Escherichia coli O157:H- str. H 2687] gi|320653113|gb|EFX21307.1| electron transport complex protein RnfB [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|323163523|gb|EFZ49349.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli E128010] gi|323169934|gb|EFZ55590.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli LT-68] gi|323187053|gb|EFZ72369.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli RN587/1] gi|323948000|gb|EGB43993.1| electron transporter [Escherichia coli H120] gi|323952613|gb|EGB48485.1| electron transporter [Escherichia coli H252] gi|323956693|gb|EGB52429.1| electron transporter [Escherichia coli H263] gi|324006985|gb|EGB76204.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli MS 57-2] gi|324014760|gb|EGB83979.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli MS 60-1] gi|324019500|gb|EGB88719.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli MS 117-3] gi|324119384|gb|EGC13271.1| electron transporter [Escherichia coli E1167] gi|326341994|gb|EGD65775.1| Electron transport complex protein RnfB [Escherichia coli O157:H7 str. 1044] gi|326343545|gb|EGD67307.1| Electron transport complex protein RnfB [Escherichia coli O157:H7 str. 1125] gi|331049121|gb|EGI21193.1| electron transport complex protein RnfB [Escherichia coli M718] gi|331055845|gb|EGI27854.1| electron transport complex protein RnfB [Escherichia coli TA206] gi|331063499|gb|EGI35410.1| electron transport complex protein RnfB [Escherichia coli TA271] gi|331069395|gb|EGI40782.1| electron transport complex protein RnfB [Escherichia coli TA280] gi|331073953|gb|EGI45273.1| electron transport complex protein RnfB [Escherichia coli H591] gi|331079350|gb|EGI50547.1| electron transport complex protein RnfB [Escherichia coli H299] gi|332096075|gb|EGJ01080.1| electron transport complex, RnfABCDGE type, B subunit [Shigella boydii 3594-74] gi|333005284|gb|EGK24804.1| electron transport complex, RnfABCDGE type, B subunit [Shigella flexneri VA-6] Length = 192 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI + + + C C LC + CP I Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTHCI 162 Query: 119 VEGPNFEFATETRQEL 134 P E + +L Sbjct: 163 SLQPVAETPDSWKWDL 178 Score = 35.5 bits (80), Expect = 2.6, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C C +ACPVDAI Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132 >gi|304379496|ref|ZP_07362231.1| NAD-dependent formate dehydrogenase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|304342028|gb|EFM07932.1| NAD-dependent formate dehydrogenase [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|320140151|gb|EFW32010.1| formate dehydrogenase, alpha subunit [Staphylococcus aureus subsp. aureus MRSA131] gi|320143421|gb|EFW35202.1| formate dehydrogenase, alpha subunit [Staphylococcus aureus subsp. aureus MRSA177] Length = 1012 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 13/96 (13%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P+EK Y +CI C C C + R + Sbjct: 159 PYEKDYGP----------FYRYDPNQCILCGRCVEACQDIEVNETIRIDWDREHPRVIWD 208 Query: 97 D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 + I+ C+ CG C CP +A++E A Sbjct: 209 NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGY 244 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 17/68 (25%), Gaps = 8/68 (11%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105 R C C CE A Y D +CI Sbjct: 118 RILEKHMLYCTVCDYNNGDCEIHNTMDAWGLQHQTYEYKEKPYEKDYGPFYRYDPNQCIL 177 Query: 106 CGLCQEAC 113 CG C EAC Sbjct: 178 CGRCVEAC 185 >gi|303242026|ref|ZP_07328518.1| Cobyrinic acid ac-diamide synthase [Acetivibrio cellulolyticus CD2] gi|302590444|gb|EFL60200.1| Cobyrinic acid ac-diamide synthase [Acetivibrio cellulolyticus CD2] Length = 290 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 21/105 (20%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI C +C+ C +I E + + +KC CG C ACP AI Sbjct: 64 DPDLCIKCGICKDTCRFDSINDE--------------FKMIPMKCEGCGACVLACPQKAI 109 Query: 119 VE----GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 + +R + LL+ G ++V + + Sbjct: 110 HLEEVKTGELYISKTSRGTFSH---ALLDIGAEGSGKLVTEVRKN 151 >gi|297571802|ref|YP_003697576.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Arcanobacterium haemolyticum DSM 20595] gi|296932149|gb|ADH92957.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Arcanobacterium haemolyticum DSM 20595] Length = 291 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 21/56 (37%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C +C CP A+ IE R + C C C + CPV A+ Sbjct: 166 CTMCGVCVKACPHDALAIEPAKENSTSRMAGSRLIYAVDACRGCNRCIDLCPVSAL 221 Score = 35.1 bits (79), Expect = 3.0, Method: Composition-based stats. Identities = 12/26 (46%), Positives = 16/26 (61%) Query: 103 CIYCGLCQEACPVDAIVEGPNFEFAT 128 C CG+C +ACP DA+ P E +T Sbjct: 166 CTMCGVCVKACPHDALAIEPAKENST 191 >gi|237722431|ref|ZP_04552912.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_2_4] gi|229448241|gb|EEO54032.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_2_4] Length = 588 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 5/89 (5%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVR 95 PF G SPR R A ++CI C+ CE++C Q + R T Sbjct: 131 PFNGGELSPRKREITA--SIVRNMDKCIFCRRCESVCNDVQTVGALGAIRRGFNTTIAPA 188 Query: 96 YDIDM--IKCIYCGLCQEACPVDAIVEGP 122 +D M +C YCG C CPV A+ E Sbjct: 189 FDRMMTESECTYCGQCVAVCPVGALTERD 217 Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 5/67 (7%) Query: 52 ALRRYPNGEERCIACKLCEAICPA-----QAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 L +PN C C CE A + + G T +M KCI+C Sbjct: 99 ILSDHPNDCLTCPKCGNCELQTLALRFNIREMPFNGGELSPRKREITASIVRNMDKCIFC 158 Query: 107 GLCQEAC 113 C+ C Sbjct: 159 RRCESVC 165 >gi|222445075|ref|ZP_03607590.1| hypothetical protein METSMIALI_00692 [Methanobrevibacter smithii DSM 2375] gi|222434640|gb|EEE41805.1| hypothetical protein METSMIALI_00692 [Methanobrevibacter smithii DSM 2375] Length = 339 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 37/100 (37%), Gaps = 8/100 (8%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG----PRCHDGTRRTVRY 96 G P RG + C+ C LC CP A+++ + V Sbjct: 43 GPIVPIARGLIEMDLVSVTSNTCVLCGLCSVACPFDALSLTINGNDIKETGNYPVWEVES 102 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 +I+ CIYCG C CP D I+ +R++L Sbjct: 103 EINDDDCIYCGRCYSVCPRDTILFKREL----PSREDLVI 138 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 1/73 (1%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 R + + E++C+ C +C +CPA AI++ + P + ++D KCIY Sbjct: 131 PSREDLVIGEISVDEDKCVYCSICSEMCPAGAISLTNNPEFSNDNLNNTI-EVDTSKCIY 189 Query: 106 CGLCQEACPVDAI 118 CG+C+ ACP DAI Sbjct: 190 CGVCKRACPQDAI 202 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 1/72 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ CI C C ++CP I +D KC+YC +C E CP AI Sbjct: 105 NDDDCIYCGRCYSVCPRDTILF-KRELPSREDLVIGEISVDEDKCVYCSICSEMCPAGAI 163 Query: 119 VEGPNFEFATET 130 N EF+ + Sbjct: 164 SLTNNPEFSNDN 175 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 4/85 (4%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDM 100 P F ++ +CI C +C+ CP AI + + I Sbjct: 169 PEFSNDNLNNTIEVDTSKCIYCGVCKRACPQDAIKAVCSTCMLQDQIKAPEINGTASILK 228 Query: 101 IKCIYCGLCQEACPVDAIVEGPNFE 125 C+ C C+E CPVD I FE Sbjct: 229 DGCVNCSWCKEVCPVDTINVTKPFE 253 Score = 42.4 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 32/76 (42%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R R+ + +RC+ C +C +CP ++ + G + C+ CG Sbjct: 10 RSGEETRKLSHNNDRCVGCGICTDVCPTSSLRLGPIVPIARGLIEMDLVSVTSNTCVLCG 69 Query: 108 LCQEACPVDAIVEGPN 123 LC ACP DA+ N Sbjct: 70 LCSVACPFDALSLTIN 85 Score = 38.9 bits (89), Expect = 0.25, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 11/79 (13%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + + + F G L + AC C+ +CP A+ I Sbjct: 241 CPVDTINVTKPFEGTLKLVETDESTCKGDACHACQDVCPCDAVEIIDNKA---------- 290 Query: 96 YDIDMIKCIYCGLCQEACP 114 I++ C CG C ACP Sbjct: 291 -TINLDYCNLCGACVNACP 308 Score = 33.5 bits (75), Expect = 8.7, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C C+ +CP I + + +GT + V D K C CQ+ CP DA+ Sbjct: 231 CVNCSWCKEVCPVDTINVT---KPFEGTLKLVETDESTCKGDACHACQDVCPCDAVEIID 287 Query: 123 N 123 N Sbjct: 288 N 288 >gi|239826017|ref|YP_002948641.1| formate dehydrogenase, subunit alpha [Geobacillus sp. WCH70] gi|239806310|gb|ACS23375.1| formate dehydrogenase, alpha subunit [Geobacillus sp. WCH70] Length = 987 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 3/83 (3%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD--- 97 + + Y +CIAC C +C + R + + Sbjct: 129 RPKVDPSEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPRVIWDNGVP 188 Query: 98 IDMIKCIYCGLCQEACPVDAIVE 120 I+ C+ CG C CP +A++E Sbjct: 189 INESSCVSCGQCVTVCPCNALME 211 Score = 38.9 bits (89), Expect = 0.21, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q+ + Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKLHNTVELMGIEHQSYPYRPKVDPSEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|125972950|ref|YP_001036860.1| NADH dehydrogenase (quinone) [Clostridium thermocellum ATCC 27405] gi|256005706|ref|ZP_05430662.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 2360] gi|281417161|ref|ZP_06248181.1| NADH dehydrogenase (quinone) [Clostridium thermocellum JW20] gi|125713175|gb|ABN51667.1| NADH dehydrogenase (quinone) [Clostridium thermocellum ATCC 27405] gi|255990337|gb|EEU00463.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 2360] gi|281408563|gb|EFB38821.1| NADH dehydrogenase (quinone) [Clostridium thermocellum JW20] gi|316940814|gb|ADU74848.1| NADH dehydrogenase (quinone) [Clostridium thermocellum DSM 1313] Length = 624 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 36/99 (36%), Gaps = 15/99 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 ++ F+ + + ++ T L+ C C C CP AIT Sbjct: 541 TIKN-FREEYEAHIYDKRCPTGNC----QKLKTITIDASLCKGCSKCARSCPVGAITG-- 593 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 + + ID KCI CG C E C AI+EG Sbjct: 594 --------KVKEPFVIDQSKCIKCGACIETCAFHAILEG 624 >gi|325960221|ref|YP_004291687.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanobacterium sp. AL-21] gi|325331653|gb|ADZ10715.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanobacterium sp. AL-21] Length = 334 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 37/100 (37%), Gaps = 8/100 (8%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI----ESGPRCHDGTRRTVRY 96 G P RG + + C C LC A CP A+ E + + + Sbjct: 39 GPVLPIARGLVDMDYININKNSCCLCGLCAAACPFDALEFKIDGEDIKKMDEYPKWIKDA 98 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 ID CIYC C+ ACP DAI R++L Sbjct: 99 AIDSEACIYCKACETACPQDAIRVQR----TLPKREDLVI 134 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 40/71 (56%), Gaps = 6/71 (8%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R + + +++CI+CK+CE +CP AIT++ R T +D KC+YC Sbjct: 129 REDLVIGEIGVDQDKCISCKICEELCPGDAITVQKTGRNEYET------VVDEDKCVYCL 182 Query: 108 LCQEACPVDAI 118 +C+ ACP DAI Sbjct: 183 VCKRACPTDAI 193 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 34/78 (43%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 S R +R + E+C+ C +C +ICP ++I G +I+ Sbjct: 1 MSSLERNGDEIRSLKHSNEKCVGCGICSSICPTKSINNGPVLPIARGLVDMDYININKNS 60 Query: 103 CIYCGLCQEACPVDAIVE 120 C CGLC ACP DA+ Sbjct: 61 CCLCGLCAAACPFDALEF 78 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 7/74 (9%) Query: 59 GEERCIACKLCEAICPAQA-------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 E++C+ C +C+ CP A + + + ++ C+ CG CQE Sbjct: 174 DEDKCVYCLVCKRACPTDAIKAVCSSCAYQDYKFDPETFKTHGNTILNPDSCVNCGWCQE 233 Query: 112 ACPVDAIVEGPNFE 125 CPVDA V FE Sbjct: 234 ICPVDAAVVTKPFE 247 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 1/69 (1%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 ++ E CI CK CE CP AI ++ +D KCI C +C Sbjct: 92 PKWIKDAAIDSEACIYCKACETACPQDAIRVQ-RTLPKREDLVIGEIGVDQDKCISCKIC 150 Query: 110 QEACPVDAI 118 +E CP DAI Sbjct: 151 EELCPGDAI 159 Score = 34.7 bits (78), Expect = 4.4, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 23/86 (26%), Gaps = 24/86 (27%) Query: 59 GEERCIACKLCEAICPAQA------------ITIESGPRCHDGTRRTVRY---------- 96 + C+ C C+ ICP A E+ + Sbjct: 221 NPDSCVNCGWCQEICPVDAAVVTKPFEGEASFDDEAECKGDSCHACQDVCPCNAIEIVDG 280 Query: 97 --DIDMIKCIYCGLCQEACPVDAIVE 120 ID C+ CG C CP I Sbjct: 281 KSVIDQRVCVLCGACANVCPQKCIQI 306 >gi|320325636|gb|EFW81698.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv. glycinea str. B076] gi|320327081|gb|EFW83095.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv. glycinea str. race 4] gi|330876899|gb|EGH11048.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv. glycinea str. race 4] Length = 290 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 10/75 (13%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 RG + E CI C C CP AI + + + + + +C C Sbjct: 76 RGAAPAQVAFIREAECIGCTKCIQACPVDAIVGAAK----------LMHTVIVDECTGCD 125 Query: 108 LCQEACPVDAIVEGP 122 LC CPVD I P Sbjct: 126 LCVAPCPVDCIEMHP 140 >gi|313898096|ref|ZP_07831635.1| rubredoxin [Clostridium sp. HGF2] gi|312957124|gb|EFR38753.1| rubredoxin [Clostridium sp. HGF2] Length = 571 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 9/62 (14%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C C +C + G + D CI+CG C CP AI E Sbjct: 27 CIKCGQCRDVCQ---------KQISVGHHYDLLKTGDTAICIHCGQCANVCPTGAITEIQ 77 Query: 123 NF 124 ++ Sbjct: 78 DW 79 >gi|312127756|ref|YP_003992630.1| nitrite and sulfite reductase 4Fe-4S region [Caldicellulosiruptor hydrothermalis 108] gi|311777775|gb|ADQ07261.1| nitrite and sulphite reductase 4Fe-4S region [Caldicellulosiruptor hydrothermalis 108] Length = 296 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 9/76 (11%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G E C C LC+A+CPA+AI I+ + + ID KC YCG Sbjct: 152 GIKGAIEPEWEESSCTFCGLCQAVCPAKAIQIDE---------KNKKITIDRDKCTYCGR 202 Query: 109 CQEACPVDAIVEGPNF 124 C ++CP ++ P + Sbjct: 203 CVKSCPTNSWKGKPGY 218 >gi|289626586|ref|ZP_06459540.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289647568|ref|ZP_06478911.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv. aesculi str. 2250] gi|330867251|gb|EGH01960.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 290 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 10/75 (13%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 RG + E CI C C CP AI + + + + + +C C Sbjct: 76 RGAAPAQVAFIREAECIGCTKCIQACPVDAIVGAAK----------LMHTVIVDECTGCD 125 Query: 108 LCQEACPVDAIVEGP 122 LC CPVD I P Sbjct: 126 LCVAPCPVDCIEMHP 140 >gi|218674605|ref|ZP_03524274.1| NADH-ubiquinone oxidoreductase protein, chain G [Rhizobium etli GR56] Length = 527 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 3/80 (3%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 + S R + N RCI C+ C +C + G ++ Sbjct: 128 RVFHSEDIRLSPVIIMNVN---RCIQCQRCVRMCEEVVGAVALGTAEKGMDTAVTGFEGS 184 Query: 100 MIKCIYCGLCQEACPVDAIV 119 + C CG C E CPV A++ Sbjct: 185 LASCDQCGNCVEVCPVGALM 204 >gi|20093761|ref|NP_613608.1| formylmethanofuran dehydrogenase subunit F, ferredoxin containing [Methanopyrus kandleri AV19] gi|19886668|gb|AAM01538.1| Probable formylmethanofuran dehydrogenase subunit F, ferredoxin containing [Methanopyrus kandleri AV19] Length = 150 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 9/81 (11%) Query: 44 SPRFRGEHALRRYPN-GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 RG L + E+RC+ C +C CP AI + +ID + Sbjct: 56 PVTERGVPKLPKNVEVDEDRCVYCGVCMRTCPVDAIQVTK--------PYQGHIEIDDEE 107 Query: 103 CIYCGLCQEACPVDAIVEGPN 123 C+ CGLC E CP +A+ G + Sbjct: 108 CVGCGLCVEICPCNALEFGRD 128 Score = 37.0 bits (84), Expect = 0.88, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 19/35 (54%) Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 + ++D +C+YCG+C CPVDAI + Sbjct: 63 PKLPKNVEVDEDRCVYCGVCMRTCPVDAIQVTKPY 97 >gi|14590634|ref|NP_142702.1| indolepyruvate ferredoxin oxidoreductase alpha subunit [Pyrococcus horikoshii OT3] gi|6685560|sp|O58495|IORA_PYRHO RecName: Full=Indolepyruvate oxidoreductase subunit iorA; Short=IOR; AltName: Full=Indolepyruvate ferredoxin oxidoreductase subunit alpha gi|3257173|dbj|BAA29856.1| 648aa long hypothetical indolepyruvate ferredoxin oxidoreductase alpha subunit [Pyrococcus horikoshii OT3] Length = 648 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 9/79 (11%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R Y EE+C CK+C AI ++ + +D + C CG Sbjct: 579 REGKQWPIYQVNEEKCTGCKICINAYGCPAIYWDAEKKKA---------RVDPLMCWGCG 629 Query: 108 LCQEACPVDAIVEGPNFEF 126 C + CP A + E Sbjct: 630 GCAQVCPFGAFEKVREGEL 648 >gi|329956925|ref|ZP_08297493.1| pyruvate synthase [Bacteroides clarus YIT 12056] gi|328523682|gb|EGF50774.1| pyruvate synthase [Bacteroides clarus YIT 12056] Length = 1185 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 32/90 (35%), Gaps = 15/90 (16%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGP 84 E+G+ RG A N E CI C C +CP A + Sbjct: 667 EQGTAKYEKRGVAAFVPEWN-PENCIQCNKCAYVCPHASIRPFVLDAEEQKGAEFAQLKA 725 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 T R +D++ C+ CG C + CP Sbjct: 726 VGKVFDGMTFRIQVDVLDCLGCGNCADVCP 755 >gi|283853443|ref|ZP_06370687.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Desulfovibrio sp. FW1012B] gi|283571163|gb|EFC19179.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Desulfovibrio sp. FW1012B] Length = 776 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 28/103 (27%), Positives = 31/103 (30%), Gaps = 8/103 (7%) Query: 25 RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84 R K T F+ A + G C C LCE ICP AI+ G Sbjct: 682 RKMIDYKRTKLEYFDPRIMEFNDLTSCASQCSSCG--ACRDCGLCETICPTGAISRRQGE 739 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 KCI CG C ACP N A Sbjct: 740 GKEFEMVSD------PEKCIGCGFCGNACPCGVWTIVENTPLA 776 >gi|148380778|ref|YP_001255319.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum A str. ATCC 3502] gi|153931280|ref|YP_001385063.1| dihydropyrimidine dehydrogenase [Clostridium botulinum A str. ATCC 19397] gi|153934691|ref|YP_001388532.1| dihydropyrimidine dehydrogenase [Clostridium botulinum A str. Hall] gi|148290262|emb|CAL84382.1| putative iron-sulfur oxidoreductase [Clostridium botulinum A str. ATCC 3502] gi|152927324|gb|ABS32824.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum A str. ATCC 19397] gi|152930605|gb|ABS36104.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum A str. Hall] Length = 411 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 7/110 (6%) Query: 15 EFVGAFFLCLRY-FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + + ++ F+ + K + EE C+ C C C Sbjct: 295 DMIEGLSYYMKEKGFEKLEDMVGLANKNIIPAEDLDRGYIVYPKFNEENCVGCGRCYISC 354 Query: 74 PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 G + + + ++ C+ C LC CPV I +G Sbjct: 355 YDG------GHQAIKWDGKNRKPILEKENCVGCHLCANVCPVQCISKGEI 398 >gi|119489276|ref|ZP_01622083.1| ferredoxin (flavodoxin) oxidoreductase [Lyngbya sp. PCC 8106] gi|119454750|gb|EAW35895.1| ferredoxin (flavodoxin) oxidoreductase [Lyngbya sp. PCC 8106] Length = 1190 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 36/118 (30%), Gaps = 30/118 (25%) Query: 58 NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRYDID--MI 101 + C+ C C +CP +A D ++ I Sbjct: 685 WDPDVCVQCGKCIMVCPHAVIRGKVYEEKELEKAPESFKFTNIKDKEYSGQKFTIQVAPE 744 Query: 102 KCIYCGLCQEACPV--------DAIVEGPNFEFATETRQ--ELYYDKERLLNNGDRWE 149 C CG+C + CP AI P + R+ + + + L N DR + Sbjct: 745 DCTGCGICVDICPAKNKSMASRKAINMEPQQPLREQERENWDFFLN----LPNPDRRQ 798 >gi|56478214|ref|YP_159803.1| electron transport complex protein RnfC [Aromatoleum aromaticum EbN1] gi|56314257|emb|CAI08902.1| putative electron transport complex protein [Aromatoleum aromaticum EbN1] Length = 547 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 31/101 (30%), Gaps = 11/101 (10%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C C CPA E + + CI CG C CP I Sbjct: 367 CIRCGACARACPADLQPFELY-WFSRAKNVGKAQEYHLFDCIECGSCAFVCPSH-IPLVD 424 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 F F+ + +ER L D+ R YR Sbjct: 425 YFRFSKSE----IWARERELKASDQ-----ARERFEFRNYR 456 >gi|327535552|gb|AEA94386.1| pyruvate:ferredoxin oxidoreductase [Enterococcus faecalis OG1RF] Length = 1243 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96 AL +RC C C +CP AI R Sbjct: 695 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 754 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125 + + C CGLC EACP A+V P E Sbjct: 755 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 785 >gi|315173790|gb|EFU17807.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX1346] Length = 1243 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96 AL +RC C C +CP AI R Sbjct: 695 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 754 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125 + + C CGLC EACP A+V P E Sbjct: 755 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 785 >gi|315167531|gb|EFU11548.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX1341] Length = 1243 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96 AL +RC C C +CP AI R Sbjct: 695 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 754 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125 + + C CGLC EACP A+V P E Sbjct: 755 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 785 >gi|315157160|gb|EFU01177.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX0043] Length = 1243 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96 AL +RC C C +CP AI R Sbjct: 695 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 754 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125 + + C CGLC EACP A+V P E Sbjct: 755 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 785 >gi|315149286|gb|EFT93302.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX0012] Length = 1243 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96 AL +RC C C +CP AI R Sbjct: 695 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 754 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125 + + C CGLC EACP A+V P E Sbjct: 755 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 785 >gi|315146221|gb|EFT90237.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX4244] Length = 1243 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96 AL +RC C C +CP AI R Sbjct: 695 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 754 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125 + + C CGLC EACP A+V P E Sbjct: 755 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 785 >gi|315143366|gb|EFT87382.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX2141] Length = 1243 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96 AL +RC C C +CP AI R Sbjct: 695 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 754 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125 + + C CGLC EACP A+V P E Sbjct: 755 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 785 >gi|315031082|gb|EFT43014.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX0017] Length = 1243 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96 AL +RC C C +CP AI R Sbjct: 695 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 754 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125 + + C CGLC EACP A+V P E Sbjct: 755 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 785 >gi|312900817|ref|ZP_07760111.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX0470] gi|311291916|gb|EFQ70472.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX0470] gi|315171593|gb|EFU15610.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX1342] Length = 1243 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96 AL +RC C C +CP AI R Sbjct: 695 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 754 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125 + + C CGLC EACP A+V P E Sbjct: 755 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 785 >gi|307277760|ref|ZP_07558846.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX0860] gi|306505639|gb|EFM74823.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX0860] Length = 1243 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96 AL +RC C C +CP AI R Sbjct: 695 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 754 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125 + + C CGLC EACP A+V P E Sbjct: 755 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 785 >gi|300856100|ref|YP_003781084.1| pyruvate:ferredoxin oxidoreductase [Clostridium ljungdahlii DSM 13528] gi|300436215|gb|ADK15982.1| pyruvate:ferredoxin oxidoreductase [Clostridium ljungdahlii DSM 13528] Length = 1174 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 36/119 (30%), Gaps = 24/119 (20%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG ++CI C C +CP A + Sbjct: 675 RGIAVFIPEWQ-IDKCIQCNQCSYVCPHSVIRACLLDDREKENAPENFLTKKPVGKDLEN 733 Query: 94 VRY--DIDMIKCIYCGLCQEACPVD--AIVEGPNFEFATETRQELYY-----DKERLLN 143 + Y I + C CG C + CP A++ P E E Y KE L++ Sbjct: 734 LHYRIQISPLDCTGCGNCADICPAPGKALIMKPAKEEIEEQSDNFEYAMKITPKEGLMD 792 >gi|293382120|ref|ZP_06628064.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis R712] gi|293386625|ref|ZP_06631202.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis S613] gi|312908248|ref|ZP_07767212.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis DAPTO 512] gi|312910681|ref|ZP_07769522.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis DAPTO 516] gi|291080499|gb|EFE17863.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis R712] gi|291083918|gb|EFE20881.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis S613] gi|310625662|gb|EFQ08945.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis DAPTO 512] gi|311289057|gb|EFQ67613.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis DAPTO 516] Length = 1243 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96 AL +RC C C +CP AI R Sbjct: 695 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 754 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125 + + C CGLC EACP A+V P E Sbjct: 755 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 785 >gi|283956852|ref|ZP_06374325.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Campylobacter jejuni subsp. jejuni 1336] gi|283791578|gb|EFC30374.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Campylobacter jejuni subsp. jejuni 1336] Length = 1186 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 43/133 (32%), Gaps = 30/133 (22%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA------------------QAIT 79 FE G+T RG + CI C C ++CP Sbjct: 668 FEHGTTEYEKRGVGVMVPRWIE-ANCIQCNQCASVCPHAVIRPFLINDEEMANAPRGVKD 726 Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV--DAIVEGP--------NFEFATE 129 + G + + + + + C C LC CP ++V P E A Sbjct: 727 HALEAKGTKGEKLSFKIQVSPLDCTGCELCVHECPTKEKSLVMVPLQEEMDFGEQENADY 786 Query: 130 TRQELYYDKERLL 142 +E+ Y K+ +L Sbjct: 787 LFKEITY-KDDIL 798 >gi|257422125|ref|ZP_05599115.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Enterococcus faecalis X98] gi|257163949|gb|EEU93909.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Enterococcus faecalis X98] Length = 1223 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96 AL +RC C C +CP AI R Sbjct: 675 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 734 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125 + + C CGLC EACP A+V P E Sbjct: 735 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 765 >gi|257419716|ref|ZP_05596710.1| pyruvate decarboxylase [Enterococcus faecalis T11] gi|257161544|gb|EEU91504.1| pyruvate decarboxylase [Enterococcus faecalis T11] Length = 1223 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96 AL +RC C C +CP AI R Sbjct: 675 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 734 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125 + + C CGLC EACP A+V P E Sbjct: 735 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 765 >gi|257084762|ref|ZP_05579123.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Enterococcus faecalis Fly1] gi|256992792|gb|EEU80094.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Enterococcus faecalis Fly1] Length = 1223 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96 AL +RC C C +CP AI R Sbjct: 675 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 734 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125 + + C CGLC EACP A+V P E Sbjct: 735 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 765 >gi|256961471|ref|ZP_05565642.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis Merz96] gi|256951967|gb|EEU68599.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis Merz96] Length = 1223 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96 AL +RC C C +CP AI R Sbjct: 675 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 734 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125 + + C CGLC EACP A+V P E Sbjct: 735 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 765 >gi|256762965|ref|ZP_05503545.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis T3] gi|256684216|gb|EEU23911.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis T3] Length = 1223 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96 AL +RC C C +CP AI R Sbjct: 675 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 734 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125 + + C CGLC EACP A+V P E Sbjct: 735 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 765 >gi|255975374|ref|ZP_05425960.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis T2] gi|255968246|gb|EET98868.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis T2] Length = 1223 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96 AL +RC C C +CP AI R Sbjct: 675 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 734 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125 + + C CGLC EACP A+V P E Sbjct: 735 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 765 >gi|255972263|ref|ZP_05422849.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis T1] gi|256956546|ref|ZP_05560717.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Enterococcus faecalis DS5] gi|255963281|gb|EET95757.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis T1] gi|256947042|gb|EEU63674.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Enterococcus faecalis DS5] Length = 1223 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96 AL +RC C C +CP AI R Sbjct: 675 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 734 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125 + + C CGLC EACP A+V P E Sbjct: 735 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 765 >gi|253729977|ref|ZP_04864142.1| formate dehydrogenase family protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|297209875|ref|ZP_06926271.1| formate dehydrogenase alpha subunit [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300910887|ref|ZP_07128337.1| formate dehydrogenase alpha subunit [Staphylococcus aureus subsp. aureus TCH70] gi|253726424|gb|EES95153.1| formate dehydrogenase family protein [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|296885548|gb|EFH24485.1| formate dehydrogenase alpha subunit [Staphylococcus aureus subsp. aureus ATCC 51811] gi|300887867|gb|EFK83062.1| formate dehydrogenase alpha subunit [Staphylococcus aureus subsp. aureus TCH70] Length = 1012 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 13/96 (13%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P+EK Y +CI C C C + R + Sbjct: 159 PYEKDYGP----------FYRYDPNQCILCGRCVEACQDIEVNETIRIDWDREHPRVIWD 208 Query: 97 D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 + I+ C+ CG C CP +A++E A Sbjct: 209 NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGY 244 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 17/68 (25%), Gaps = 8/68 (11%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105 R C C CE A Y D +CI Sbjct: 118 RILEKHMLYCTVCDYNNGDCEIHNTMDAWGLQHQTYEYKEKPYEKDYGPFYRYDPNQCIL 177 Query: 106 CGLCQEAC 113 CG C EAC Sbjct: 178 CGRCVEAC 185 >gi|300860488|ref|ZP_07106575.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TUSoD Ef11] gi|300849527|gb|EFK77277.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TUSoD Ef11] Length = 1229 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96 AL +RC C C +CP AI R Sbjct: 681 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 740 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125 + + C CGLC EACP A+V P E Sbjct: 741 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 771 >gi|229545321|ref|ZP_04434046.1| pyruvate synthase [Enterococcus faecalis TX1322] gi|229309528|gb|EEN75515.1| pyruvate synthase [Enterococcus faecalis TX1322] Length = 1243 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96 AL +RC C C +CP AI R Sbjct: 695 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 754 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125 + + C CGLC EACP A+V P E Sbjct: 755 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 785 >gi|229549565|ref|ZP_04438290.1| pyruvate synthase [Enterococcus faecalis ATCC 29200] gi|312951167|ref|ZP_07770070.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX0102] gi|229305230|gb|EEN71226.1| pyruvate synthase [Enterococcus faecalis ATCC 29200] gi|310630832|gb|EFQ14115.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX0102] gi|315034724|gb|EFT46656.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX0027] gi|315152653|gb|EFT96669.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX0031] gi|315159499|gb|EFU03516.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX0312] Length = 1243 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96 AL +RC C C +CP AI R Sbjct: 695 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 754 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125 + + C CGLC EACP A+V P E Sbjct: 755 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 785 >gi|227520214|ref|ZP_03950263.1| pyruvate synthase [Enterococcus faecalis TX0104] gi|227555351|ref|ZP_03985398.1| pyruvate synthase [Enterococcus faecalis HH22] gi|227072293|gb|EEI10256.1| pyruvate synthase [Enterococcus faecalis TX0104] gi|227175562|gb|EEI56534.1| pyruvate synthase [Enterococcus faecalis HH22] gi|315575148|gb|EFU87339.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX0309B] gi|315582575|gb|EFU94766.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX0309A] Length = 1243 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96 AL +RC C C +CP AI R Sbjct: 695 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 754 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125 + + C CGLC EACP A+V P E Sbjct: 755 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 785 >gi|110641751|ref|YP_669481.1| electron transport complex protein RnfB [Escherichia coli 536] gi|123148053|sp|Q0THJ9|RNFB_ECOL5 RecName: Full=Electron transport complex protein rnfB gi|110343343|gb|ABG69580.1| electron transport complex protein RnfB [Escherichia coli 536] Length = 192 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI + + + C C LC + CP I Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTHCI 162 Query: 119 VEGPNFEFATETRQEL 134 P E + +L Sbjct: 163 SLQPVAETPDSWKWDL 178 Score = 35.5 bits (80), Expect = 2.6, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C C +ACPVDAI Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132 >gi|29376666|ref|NP_815820.1| pyruvate ferredoxin/flavodoxin oxidoreductase family protein [Enterococcus faecalis V583] gi|29344130|gb|AAO81890.1| pyruvate ferredoxin/flavodoxin oxidoreductase family protein [Enterococcus faecalis V583] Length = 1229 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96 AL +RC C C +CP AI R Sbjct: 681 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 740 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125 + + C CGLC EACP A+V P E Sbjct: 741 QVSVKDCTGCGLCVEACPAKGKALVMKPYEE 771 >gi|116750952|ref|YP_847639.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116700016|gb|ABK19204.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Syntrophobacter fumaroxidans MPOB] Length = 950 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 12/87 (13%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR-------CHDGTRRTVRYDI 98 FR + CI+C C +CP + + ++Y I Sbjct: 20 HFRVTLRRHPRYVDMDHCISCGECAKVCPVEVKDEFNEKMSIRKAIYVKYPQAVPLKYQI 79 Query: 99 DMIKCIY-----CGLCQEACPVDAIVE 120 D CI CG C++ CP A+ Sbjct: 80 DGRNCIRVRGGDCGGCEKVCPSGAVRF 106 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 4/60 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C C LC +CP A+ +E P G+ + +C CG CQ CP + I Sbjct: 866 NETTCDGCALCLDVCPYGALQLEEIP----GSNGRQHAVVKAARCKGCGACQATCPKEGI 921 >gi|299146441|ref|ZP_07039509.1| putative [Fe] hydrogenase, large subunit HymC [Bacteroides sp. 3_1_23] gi|298516932|gb|EFI40813.1| putative [Fe] hydrogenase, large subunit HymC [Bacteroides sp. 3_1_23] Length = 588 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 5/89 (5%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVR 95 PF G SPR R A ++CI C+ CE++C Q + R T Sbjct: 131 PFNGGELSPRKREITA--SIVRNMDKCIFCRRCESVCNDVQTVGALGAIRRGFNTTIAPA 188 Query: 96 YDIDM--IKCIYCGLCQEACPVDAIVEGP 122 +D M +C YCG C CPV A+ E Sbjct: 189 FDRMMTESECTYCGQCVAVCPVGALTERD 217 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 5/67 (7%) Query: 52 ALRRYPNGEERCIACKLCEAICPA-----QAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 L +PN C C CE A + + G T +M KCI+C Sbjct: 99 ILSDHPNDCLTCPKCGNCELQTLALRFNIREMPFNGGELSPRKREITASIVRNMDKCIFC 158 Query: 107 GLCQEAC 113 C+ C Sbjct: 159 RRCESVC 165 >gi|298674390|ref|YP_003726140.1| CO dehydrogenase/acetyl-CoA synthase complex subunit epsilon [Methanohalobium evestigatum Z-7303] gi|298287378|gb|ADI73344.1| CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit [Methanohalobium evestigatum Z-7303] Length = 801 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 2/55 (3%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 ERC+ CK CE +CP ++ G ++ KCI CG C++ CP Sbjct: 410 ERCVHCKECELVCPTNLSISDAMSAAETGD--FAPFEELHDKCIGCGRCEQVCPK 462 >gi|297531251|ref|YP_003672526.1| formate dehydrogenase, subunit alpha [Geobacillus sp. C56-T3] gi|297254503|gb|ADI27949.1| formate dehydrogenase, alpha subunit [Geobacillus sp. C56-T3] Length = 987 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 27/83 (32%), Gaps = 3/83 (3%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---YD 97 + + Y +CIAC C C + R V Sbjct: 129 RPKVDPSEVDMSHPFYRYDPNQCIACGQCVEACQNLQVNETLSIDWEAERPRVVWDGGVP 188 Query: 98 IDMIKCIYCGLCQEACPVDAIVE 120 I+ C+ CG C CP +A++E Sbjct: 189 INESSCVSCGHCVTVCPCNALME 211 Score = 38.5 bits (88), Expect = 0.29, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q + Y D + Sbjct: 91 RLLENHLLYCTVCDNNNGNCKLHNTAEMMQIEHQTYPYRPKVDPSEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C EAC Sbjct: 151 CIACGQCVEAC 161 >gi|268607922|ref|ZP_06141653.1| NADH dehydrogenase (quinone) [Ruminococcus flavefaciens FD-1] Length = 632 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 3/66 (4%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L + +++CI C +C CPA AIT ++ +ID KC+ CG C Sbjct: 567 LLSFEIEKDKCIGCGMCAKQCPASAITRTDYIAPG---KKLAAMEIDKNKCVKCGACIAT 623 Query: 113 CPVDAI 118 C AI Sbjct: 624 CKFKAI 629 Score = 42.0 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 19/44 (43%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + + + ++I+ KCI CG+C + CP AI Sbjct: 553 HVVDKKCPAGVCKDLLSFEIEKDKCIGCGMCAKQCPASAITRTD 596 >gi|187251887|ref|YP_001876369.1| electron transfer flavoprotein subunit alpha [Elusimicrobium minutum Pei191] gi|186972047|gb|ACC99032.1| Electron transfer flavoprotein alpha subunit [Elusimicrobium minutum Pei191] Length = 397 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 22/63 (34%), Gaps = 12/63 (19%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 N CI C C ICP A++++ + C CG C CPV Sbjct: 3 NIGSNCIGCTKCVRICPFGALSMDGKKAVVN------------SACTLCGACIPECPVKC 50 Query: 118 IVE 120 I Sbjct: 51 ISM 53 >gi|153876731|ref|ZP_02003902.1| conserved hypothetical protein [Beggiatoa sp. PS] gi|152066805|gb|EDN66098.1| conserved hypothetical protein [Beggiatoa sp. PS] Length = 267 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 21/63 (33%), Gaps = 5/63 (7%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C+AC C +CP A+ Y D C CGLC CP I Sbjct: 210 NCLACDNCWMLCPDSAVLKTKESASDG-----SHYIFDYDYCKGCGLCANECPCGFIQML 264 Query: 122 PNF 124 F Sbjct: 265 DEF 267 >gi|154496519|ref|ZP_02035215.1| hypothetical protein BACCAP_00811 [Bacteroides capillosus ATCC 29799] gi|150274152|gb|EDN01243.1| hypothetical protein BACCAP_00811 [Bacteroides capillosus ATCC 29799] Length = 449 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 9/63 (14%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E+CI C +C+ C + G + CIYCG C ACPVD+I E Sbjct: 15 EKCIRCGMCKVACTNLMGVHGTYTLEETGGK---------AVCIYCGQCANACPVDSITE 65 Query: 121 GPN 123 Sbjct: 66 RDE 68 >gi|145528101|ref|XP_001449850.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124417439|emb|CAK82453.1| unnamed protein product [Paramecium tetraurelia] Length = 586 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 1/75 (1%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 E LR ++RC + C C +S C + T+++ I+ CI C Sbjct: 1 MEESKLRIAIINKDRCKP-QRCALECKKNCPINKSEKLCIEVTKQSKTCTINESLCIGCA 59 Query: 108 LCQEACPVDAIVEGP 122 +C + CP AI+ Sbjct: 60 ICVKKCPFKAIMIIN 74 >gi|158319289|ref|YP_001511796.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [Alkaliphilus oremlandii OhILAs] gi|158139488|gb|ABW17800.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Alkaliphilus oremlandii OhILAs] Length = 1172 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 32/107 (29%), Gaps = 19/107 (17%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRRTV-------- 94 RG ++CI C C +CP AI E +G Sbjct: 677 RGIAVNVPEWY-SDKCIQCNQCSFVCPHAAIRPFLLDEEEVKNAPEGFNTVKATGKEFDG 735 Query: 95 ---RYDIDMIKCIYCGLCQEACP--VDAIVEGPNFEFATETRQELYY 136 + + + C CG C + CP AI P R+ Y Sbjct: 736 LQYKIQVSPLDCTGCGNCVDICPAKEKAIAMMPLEPQVAAQRENWEY 782 >gi|14521496|ref|NP_126972.1| indolepyruvate ferredoxin oxidoreductase, subunit alpha [Pyrococcus abyssi GE5] gi|14194881|sp|Q9UZ57|IORA_PYRAB RecName: Full=Indolepyruvate oxidoreductase subunit iorA; Short=IOR; AltName: Full=Indolepyruvate ferredoxin oxidoreductase subunit alpha gi|5458715|emb|CAB50202.1| iorA indolepyruvate ferredoxin oxidoreductase, subunit alpha [Pyrococcus abyssi GE5] Length = 648 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 9/79 (11%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R Y E++C CK+C AI + + +D + C CG Sbjct: 579 RAGKQWPIYQVNEDKCTGCKICINAYGCPAIYWDPEKKKA---------KVDPLMCWGCG 629 Query: 108 LCQEACPVDAIVEGPNFEF 126 C + CP DA + E Sbjct: 630 GCAQVCPFDAFEKVREGEL 648 >gi|87118384|ref|ZP_01074283.1| electron transport complex protein RnfB [Marinomonas sp. MED121] gi|86166018|gb|EAQ67284.1| electron transport complex protein RnfB [Marinomonas sp. MED121] Length = 198 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 31/93 (33%), Gaps = 13/93 (13%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E E + E+ CI C C CP AI + + + Sbjct: 90 EAIPLDGDAAEEPKKQVAVIREDECIGCTKCIQACPVDAILGAAKQ----------MHTV 139 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 +C C LC E CPVD I E A +R Sbjct: 140 ISDECTGCDLCVEPCPVDCIDMV---EVAVTSR 169 >gi|332799826|ref|YP_004461325.1| NADH dehydrogenase (quinone) [Tepidanaerobacter sp. Re1] gi|332697561|gb|AEE92018.1| NADH dehydrogenase (quinone) [Tepidanaerobacter sp. Re1] Length = 597 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 40/96 (41%), Gaps = 15/96 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 +RY F+ + + +K AL Y ++C C +C +CP QAI+ E Sbjct: 514 TIRY-FRDEYEAHIKDKKCPAGAC----KALVHYEIIADKCKGCGMCLKVCPTQAISGE- 567 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 R + ID KCI C C + CP AI Sbjct: 568 ---------RRQPHKIDTDKCIKCNSCFDRCPFGAI 594 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 8/62 (12%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 I+ + V Y+I KC CG+C + CP AI + E RQ D Sbjct: 525 HIKDKKCPAGACKALVHYEIIADKCKGCGMCLKVCPTQAI--------SGERRQPHKIDT 576 Query: 139 ER 140 ++ Sbjct: 577 DK 578 >gi|330834494|ref|YP_004409222.1| putative pyruvate: ferredoxin oxidoreductase, alpha- and delta subunit [Metallosphaera cuprina Ar-4] gi|329566633|gb|AEB94738.1| putative pyruvate: ferredoxin oxidoreductase, alpha- and delta subunit [Metallosphaera cuprina Ar-4] Length = 605 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 21/65 (32%), Gaps = 10/65 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ERC C +C AI + I+ +CI CG C CP AI Sbjct: 540 DSERCTGCTICYDHFTCPAILKLENKKAV----------INQNECIGCGACVPVCPYKAI 589 Query: 119 VEGPN 123 Sbjct: 590 TLEGE 594 >gi|307596094|ref|YP_003902411.1| pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta [Vulcanisaeta distributa DSM 14429] gi|307551295|gb|ADN51360.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Vulcanisaeta distributa DSM 14429] Length = 91 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 24/75 (32%), Gaps = 10/75 (13%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G + R +C C +C CP I ID C CG+ Sbjct: 24 GTWRVYRPVINYSKCTKCGICWLYCPENVIEWLEDKNV----------RIDYNYCKGCGI 73 Query: 109 CQEACPVDAIVEGPN 123 C + CPV AI Sbjct: 74 CADVCPVKAIDMVKE 88 >gi|304558979|gb|ADM41643.1| Electron transport complex protein RnfC [Edwardsiella tarda FL6-60] Length = 773 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 39/113 (34%), Gaps = 23/113 (20%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C +CPA+ + + G D + +CI CG C CP Sbjct: 376 QPCIRCGACADVCPAR-LLPQQLYWYSQGKEHDKARDYHLQECIECGACAYVCP------ 428 Query: 121 GPNFEFATETRQELYYDKERLLNNGD----------RWESEIVRNIVTDSPYR 163 N RQE K + D R+E+ + R + + R Sbjct: 429 -SNIPLVQYYRQE----KAEIRALDDEARRAAEAKARFEARLAR-LAREKAAR 475 >gi|284007515|emb|CBA73011.1| Electron transport complex protein rnfC [Arsenophonus nasoniae] Length = 586 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 3/101 (2%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C LC CPA + + G ++ CI CG C CP I Sbjct: 380 CIRCGLCTQACPAN-LLPQQLYWFSRGQEHEKAEKYNLSDCIECGACAYVCP-SNIPLVQ 437 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + + + +K+R + R+E++ R + + R Sbjct: 438 YYRQEKAEIKAIAREKQRASDAKKRFEAKKAR-LEREKILR 477 Score = 33.9 bits (76), Expect = 7.9, Method: Composition-based stats. Identities = 9/15 (60%), Positives = 10/15 (66%) Query: 100 MIKCIYCGLCQEACP 114 CI CGLC +ACP Sbjct: 377 EEACIRCGLCTQACP 391 >gi|269139047|ref|YP_003295748.1| electron transport complex protein [Edwardsiella tarda EIB202] gi|267984708|gb|ACY84537.1| electron transport complex protein [Edwardsiella tarda EIB202] Length = 767 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 26/113 (23%), Positives = 39/113 (34%), Gaps = 23/113 (20%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C +CPA+ + + G D + +CI CG C CP Sbjct: 376 QPCIRCGACADVCPAR-LLPQQLYWYSQGKEHDKARDYHLQECIECGACAYVCP------ 428 Query: 121 GPNFEFATETRQELYYDKERLLNNGD----------RWESEIVRNIVTDSPYR 163 N RQE K + D R+E+ + R + + R Sbjct: 429 -SNIPLVQYYRQE----KAEIRALDDEARRAAEAKARFEARLAR-LAREKAAR 475 >gi|222086790|ref|YP_002545324.1| dihydroorotate oxidase protein [Agrobacterium radiobacter K84] gi|221724238|gb|ACM27394.1| dihydroorotate oxidase protein [Agrobacterium radiobacter K84] Length = 437 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 6/76 (7%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI C C A S + +++ +C+ Sbjct: 330 QYLNLNYIAKAKIDQDACIKCGRCYI-----ACEDTSHQAITNMVDGARHFEVMDEECVG 384 Query: 106 CGLCQEACPV-DAIVE 120 C LC CPV + I Sbjct: 385 CNLCVSVCPVENCITM 400 >gi|218689575|ref|YP_002397787.1| electron transport complex protein RnfB [Escherichia coli ED1a] gi|331647117|ref|ZP_08348211.1| electron transport complex protein RnfB [Escherichia coli M605] gi|254807925|sp|B7MV10|RNFB_ECO81 RecName: Full=Electron transport complex protein rnfB gi|218427139|emb|CAR07926.1| putative iron-sulfur protein [Escherichia coli ED1a] gi|281178700|dbj|BAI55030.1| conserved hypothetical protein [Escherichia coli SE15] gi|330911435|gb|EGH39945.1| electron transport complex protein RnfB [Escherichia coli AA86] gi|331043900|gb|EGI16036.1| electron transport complex protein RnfB [Escherichia coli M605] Length = 192 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI + + + C C LC + CP I Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTHCI 162 Query: 119 VEGPNFEFATETRQEL 134 P E + +L Sbjct: 163 SLQPVAETPDSWKWDL 178 Score = 35.5 bits (80), Expect = 2.6, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C C +ACPVDAI Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132 >gi|215486805|ref|YP_002329236.1| electron transport complex protein RnfB [Escherichia coli O127:H6 str. E2348/69] gi|312966608|ref|ZP_07780828.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli 2362-75] gi|254807923|sp|B7URW9|RNFB_ECO27 RecName: Full=Electron transport complex protein rnfB gi|215264877|emb|CAS09263.1| predicted iron-sulfur protein [Escherichia coli O127:H6 str. E2348/69] gi|312288718|gb|EFR16618.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli 2362-75] Length = 192 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI + + + C C LC + CP I Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTHCI 162 Query: 119 VEGPNFEFATETRQEL 134 P E + +L Sbjct: 163 SLQPVAETPDSWKWDL 178 Score = 35.5 bits (80), Expect = 2.6, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C C +ACPVDAI Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132 >gi|209921878|ref|YP_002295957.1| anaerobic sulfite reductase subunit C [Escherichia coli SE11] gi|209915371|dbj|BAG80442.1| anaerobic sulfite reductase subunit C [Escherichia coli SE11] Length = 337 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 27/94 (28%), Gaps = 8/94 (8%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 P + S G + R ERCI C C C A+ S Sbjct: 147 KTVIAGCPNDCAKASMSDFGIIGVARMRFTAERCIGCGACVKACAHHAVGCLSLKNGKAA 206 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + CI CG C ACP A P Sbjct: 207 K--------EESLCIGCGECVLACPTLAWQRQPQ 232 >gi|188587655|ref|YP_001920981.1| nitroreductase family protein fused to ferredoxin domain [Clostridium botulinum E3 str. Alaska E43] gi|188497936|gb|ACD51072.1| nitroreductase family protein [Clostridium botulinum E3 str. Alaska E43] Length = 273 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 16/103 (15%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + +E+CI+CK C CP I + G +I CI CG C CP Sbjct: 1 MFEVNKEKCISCKQCINDCPVSDILLIDGKA-----------NIKNESCIKCGHCIAICP 49 Query: 115 VDAIVEGPNF---EFATETRQELYYDKERLLNNGDRWESEIVR 154 A+ ++ E + E + + LL N ++ + + Sbjct: 50 TKAVS-TDDYNMDEVKEYNKSEFSIESDNLL-NFIKFRRSVRK 90 >gi|170754614|ref|YP_001782424.1| dihydropyrimidine dehydrogenase [Clostridium botulinum B1 str. Okra] gi|169119826|gb|ACA43662.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum B1 str. Okra] Length = 411 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 7/110 (6%) Query: 15 EFVGAFFLCLRY-FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + + ++ F+ + K + EE C+ C C C Sbjct: 295 DMIEGLSYYMKEKGFEKLEDMVGLANKNIIPAEDLDRGYIVYPKFNEENCVGCGRCYISC 354 Query: 74 PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 G + + + ++ C+ C LC CPV I +G Sbjct: 355 YDG------GHQAIKWDGKNRKPILEKENCVGCHLCANVCPVQCISKGEI 398 >gi|138894138|ref|YP_001124591.1| formate dehydrogenase chain A [Geobacillus thermodenitrificans NG80-2] gi|134265651|gb|ABO65846.1| Formate dehydrogenase chain A [Geobacillus thermodenitrificans NG80-2] Length = 988 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 27/83 (32%), Gaps = 3/83 (3%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---YD 97 + + Y +CIAC C C + R V Sbjct: 130 RPKVDPSEVDMSHPFYRYDPNQCIACGQCVEACQNLQVNETLSIDWEAERPRVVWDGGVP 189 Query: 98 IDMIKCIYCGLCQEACPVDAIVE 120 I+ C+ CG C CP +A++E Sbjct: 190 INESSCVSCGHCVTVCPCNALME 212 Score = 38.5 bits (88), Expect = 0.30, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q + Y D + Sbjct: 92 RLLENHLLYCTVCDNNNGNCKLHNTTEMMQIEHQTYPYRPKVDPSEVDMSHPFYRYDPNQ 151 Query: 103 CIYCGLCQEAC 113 CI CG C EAC Sbjct: 152 CIACGQCVEAC 162 >gi|125973687|ref|YP_001037597.1| hypothetical protein Cthe_1172 [Clostridium thermocellum ATCC 27405] gi|256005771|ref|ZP_05430724.1| protein of unknown function DUF362 [Clostridium thermocellum DSM 2360] gi|281417844|ref|ZP_06248864.1| protein of unknown function DUF362 [Clostridium thermocellum JW20] gi|125713912|gb|ABN52404.1| protein of unknown function DUF362 [Clostridium thermocellum ATCC 27405] gi|255990271|gb|EEU00400.1| protein of unknown function DUF362 [Clostridium thermocellum DSM 2360] gi|281409246|gb|EFB39504.1| protein of unknown function DUF362 [Clostridium thermocellum JW20] gi|316940117|gb|ADU74151.1| iron-sulfur cluster-binding protein [Clostridium thermocellum DSM 1313] Length = 382 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 6/84 (7%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 PF+ G FR + Y + +CI C +C A ++ + Sbjct: 292 PFKPGGAIQFFRNFIVPKPY-ILKNKCIKCGVC-----VNACPVKPKAVDWHNGNKKEPP 345 Query: 97 DIDMIKCIYCGLCQEACPVDAIVE 120 +CI C CQE CP AI Sbjct: 346 TYIYKRCIRCYCCQELCPESAIHL 369 >gi|16129586|ref|NP_416145.1| electron transport complex protein, iron-sulfur protein, required for the reduction of SoxR [Escherichia coli str. K-12 substr. MG1655] gi|89108470|ref|AP_002250.1| predicted iron-sulfur protein [Escherichia coli str. K-12 substr. W3110] gi|157161090|ref|YP_001458408.1| electron transport complex protein RnfB [Escherichia coli HS] gi|170020020|ref|YP_001724974.1| electron transport complex protein RnfB [Escherichia coli ATCC 8739] gi|170081292|ref|YP_001730612.1| inner membrane iron-sulfur protein in SoxR-reducing complex [Escherichia coli str. K-12 substr. DH10B] gi|193070250|ref|ZP_03051194.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli E110019] gi|194431902|ref|ZP_03064192.1| electron transport complex, RnfABCDGE type, B subunit [Shigella dysenteriae 1012] gi|194436652|ref|ZP_03068753.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli 101-1] gi|218554196|ref|YP_002387109.1| electron transport complex protein RnfB [Escherichia coli IAI1] gi|238900844|ref|YP_002926640.1| putative iron-sulfur protein [Escherichia coli BW2952] gi|253773414|ref|YP_003036245.1| electron transport complex protein RnfB [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161690|ref|YP_003044798.1| electron transport complex protein RnfB [Escherichia coli B str. REL606] gi|256018179|ref|ZP_05432044.1| electron transport complex protein RnfB [Shigella sp. D9] gi|256022711|ref|ZP_05436576.1| electron transport complex protein RnfB [Escherichia sp. 4_1_40B] gi|260855453|ref|YP_003229344.1| putative iron-sulfur protein [Escherichia coli O26:H11 str. 11368] gi|260868120|ref|YP_003234522.1| putative iron-sulfur protein [Escherichia coli O111:H- str. 11128] gi|300819311|ref|ZP_07099510.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli MS 107-1] gi|300931502|ref|ZP_07146820.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli MS 187-1] gi|300950448|ref|ZP_07164366.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli MS 116-1] gi|300959101|ref|ZP_07171189.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli MS 175-1] gi|301029279|ref|ZP_07192384.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli MS 196-1] gi|301647800|ref|ZP_07247588.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli MS 146-1] gi|307138282|ref|ZP_07497638.1| electron transport complex protein RnfB [Escherichia coli H736] gi|312969649|ref|ZP_07783832.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli 1827-70] gi|331642221|ref|ZP_08343356.1| electron transport complex protein RnfB [Escherichia coli H736] gi|332279227|ref|ZP_08391640.1| ferredoxin II [Shigella sp. D9] gi|6176588|sp|P77223|RNFB_ECOLI RecName: Full=Electron transport complex protein rnfB gi|166991042|sp|A8A0H1|RNFB_ECOHS RecName: Full=Electron transport complex protein rnfB gi|189043385|sp|B1IQC6|RNFB_ECOLC RecName: Full=Electron transport complex protein rnfB gi|226735414|sp|B7M0I5|RNFB_ECO8A RecName: Full=Electron transport complex protein rnfB gi|226735415|sp|B1XF93|RNFB_ECODH RecName: Full=Electron transport complex protein rnfB gi|259646559|sp|C4ZY91|RNFB_ECOBW RecName: Full=Electron transport complex protein rnfB gi|1742687|dbj|BAA15383.1| predicted iron-sulfur protein [Escherichia coli str. K12 substr. W3110] gi|1787915|gb|AAC74700.1| electron transport complex protein, iron-sulfur protein, required for the reduction of SoxR [Escherichia coli str. K-12 substr. MG1655] gi|157066770|gb|ABV06025.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli HS] gi|169754948|gb|ACA77647.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli ATCC 8739] gi|169889127|gb|ACB02834.1| inner membrane iron-sulfur protein in SoxR-reducing complex [Escherichia coli str. K-12 substr. DH10B] gi|192956431|gb|EDV86890.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli E110019] gi|194419810|gb|EDX35889.1| electron transport complex, RnfABCDGE type, B subunit [Shigella dysenteriae 1012] gi|194424684|gb|EDX40670.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli 101-1] gi|218360964|emb|CAQ98537.1| putative iron-sulfur protein [Escherichia coli IAI1] gi|238862599|gb|ACR64597.1| predicted iron-sulfur protein [Escherichia coli BW2952] gi|242377359|emb|CAQ32105.1| member of SoxR-reducing complex [Escherichia coli BL21(DE3)] gi|253324458|gb|ACT29060.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973591|gb|ACT39262.1| electron transport complex protein RnfB [Escherichia coli B str. REL606] gi|253977786|gb|ACT43456.1| electron transport complex protein RnfB [Escherichia coli BL21(DE3)] gi|257754102|dbj|BAI25604.1| predicted iron-sulfur protein [Escherichia coli O26:H11 str. 11368] gi|257764476|dbj|BAI35971.1| predicted iron-sulfur protein [Escherichia coli O111:H- str. 11128] gi|260449248|gb|ACX39670.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli DH1] gi|299877815|gb|EFI86026.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli MS 196-1] gi|300314289|gb|EFJ64073.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli MS 175-1] gi|300450216|gb|EFK13836.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli MS 116-1] gi|300460705|gb|EFK24198.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli MS 187-1] gi|300528082|gb|EFK49144.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli MS 107-1] gi|301074084|gb|EFK88890.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli MS 146-1] gi|309701854|emb|CBJ01166.1| electron transport complex protein [Escherichia coli ETEC H10407] gi|310337934|gb|EFQ03023.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli 1827-70] gi|315136269|dbj|BAJ43428.1| electron transport complex protein RnfB [Escherichia coli DH1] gi|315618814|gb|EFU99397.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli 3431] gi|323152868|gb|EFZ39138.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli EPECa14] gi|323180942|gb|EFZ66480.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli 1180] gi|323186100|gb|EFZ71456.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli 1357] gi|323937423|gb|EGB33701.1| electron transporter [Escherichia coli E1520] gi|323940295|gb|EGB36487.1| electron transporter [Escherichia coli E482] gi|323962198|gb|EGB57792.1| electron transporter [Escherichia coli H489] gi|323973846|gb|EGB69019.1| electron transporter [Escherichia coli TA007] gi|331039019|gb|EGI11239.1| electron transport complex protein RnfB [Escherichia coli H736] gi|332091212|gb|EGI96301.1| electron transport complex, RnfABCDGE type, B subunit [Shigella boydii 5216-82] gi|332101579|gb|EGJ04925.1| ferredoxin II [Shigella sp. D9] gi|332343346|gb|AEE56680.1| electron transport complex RnfB [Escherichia coli UMNK88] Length = 192 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI + + + C C LC + CP I Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTHCI 162 Query: 119 VEGPNFEFATETRQEL 134 P E + +L Sbjct: 163 SLQPVAETPDSWKWDL 178 Score = 35.5 bits (80), Expect = 2.6, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C C +ACPVDAI Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132 >gi|319641468|ref|ZP_07996159.1| pyruvate-flavodoxin oxidoreductase [Bacteroides sp. 3_1_40A] gi|317386901|gb|EFV67789.1| pyruvate-flavodoxin oxidoreductase [Bacteroides sp. 3_1_40A] Length = 1181 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 31/90 (34%), Gaps = 15/90 (16%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGP 84 E+G+ RG A N E CI C C +CP A Sbjct: 667 EQGTAQYEKRGVAAFVPEWN-AENCIQCNKCAYVCPHASIRPFVLDAEEQKGADFETLKA 725 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 T R +D++ C+ CG C + CP Sbjct: 726 VGKQFDGMTFRIQVDVLDCLGCGNCADVCP 755 >gi|307310801|ref|ZP_07590447.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli W] gi|306908979|gb|EFN39475.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli W] gi|315060935|gb|ADT75262.1| electron transport complex protein RnfCB [Escherichia coli W] gi|323378494|gb|ADX50762.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli KO11] Length = 192 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI + + + C C LC + CP I Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAIHTVMSDLCTGCNLCVDPCPTHCI 162 Query: 119 VEGPNFEFATETRQEL 134 P E + +L Sbjct: 163 SLQPVAETPDSWKWDL 178 Score = 35.5 bits (80), Expect = 2.4, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C C +ACPVDAI Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132 >gi|303243585|ref|ZP_07329927.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanothermococcus okinawensis IH1] gi|302486146|gb|EFL49068.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanothermococcus okinawensis IH1] Length = 355 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 31/72 (43%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G R + C+ C +C ICP AI + G + DID KC+ CG+ Sbjct: 20 GTVENRVLNWNDNMCVGCGICSDICPVGAIEMGPLGAIFKGDIEAPKLDIDNKKCVLCGM 79 Query: 109 CQEACPVDAIVE 120 C ACP A+ Sbjct: 80 CASACPFGAMDL 91 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 32/71 (45%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R L +E C+ C +C CPA AI + G +D C+YC Sbjct: 142 RKTLVLGEININKETCVLCGICADYCPADAIELVPGEMNALNLNPYSDIVVDTDACVYCK 201 Query: 108 LCQEACPVDAI 118 +C++ACP +AI Sbjct: 202 VCEKACPHNAI 212 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 4/84 (4%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT----IESGPRCHDGTRRTV 94 E G F+G+ + ++C+ C +C + CP A+ S + Sbjct: 50 EMGPLGAIFKGDIEAPKLDIDNKKCVLCGMCASACPFGAMDLKIDGTSIKELPQYPKIKR 109 Query: 95 RYDIDMIKCIYCGLCQEACPVDAI 118 ++ KC+ C C+ CP AI Sbjct: 110 DITLNQDKCVLCEQCEMVCPQCAI 133 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 1/64 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +++C+ C+ CE +CP Q T +I+ C+ CG+C + CP DAI Sbjct: 114 NQDKCVLCEQCEMVCP-QCAIEVERELPERKTLVLGEININKETCVLCGICADYCPADAI 172 Query: 119 VEGP 122 P Sbjct: 173 ELVP 176 Score = 41.2 bits (95), Expect = 0.051, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 40/115 (34%), Gaps = 17/115 (14%) Query: 36 YPFEKGSTSPRFRGEHALRRYPN---GEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 P + P L Y + + C+ CK+CE CP AI + + Sbjct: 167 CPADAIELVPGEMNALNLNPYSDIVVDTDACVYCKVCEKACPHNAIEVICYKCPLANRIK 226 Query: 93 TV--------RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139 + I+ C+ C C+ CP DA+ FE EL D++ Sbjct: 227 KPELYKEITGKTTINKNLCVSCSWCENVCPADALSVEKPFE------GELIIDED 275 Score = 40.5 bits (93), Expect = 0.074, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 34/87 (39%), Gaps = 3/87 (3%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 + ++ + E+ C AC C AICP A+ P+ + Sbjct: 246 VSCSWCENVCPADALSVEKPFEGELIIDEDACNACGACIAICPCNALVF---PKSEGQAQ 302 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAI 118 + ++ CI CG C ACPV+A+ Sbjct: 303 IAPKIAVNPNVCILCGACTHACPVNAL 329 >gi|298488743|ref|ZP_07006772.1| Electron transport complex protein rnfB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298156816|gb|EFH97907.1| Electron transport complex protein rnfB [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 290 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 10/75 (13%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 RG + E CI C C CP AI + + + + + +C C Sbjct: 76 RGAAPAQVAFIREAECIGCTKCIQACPVDAIVGAAK----------LMHTVIVDECTGCD 125 Query: 108 LCQEACPVDAIVEGP 122 LC CPVD I P Sbjct: 126 LCVAPCPVDCIEMHP 140 >gi|295087525|emb|CBK69048.1| hydrogenases, Fe-only [Bacteroides xylanisolvens XB1A] Length = 599 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 5/89 (5%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVR 95 PF G SPR R A ++CI C+ CE++C Q + R T Sbjct: 142 PFNGGELSPRKREITA--SIVRNMDKCIFCRRCESVCNDVQTVGALGAIRRGFNTTIAPA 199 Query: 96 YDIDM--IKCIYCGLCQEACPVDAIVEGP 122 +D M +C YCG C CPV A+ E Sbjct: 200 FDRMMTESECTYCGQCVAVCPVGALTERD 228 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 5/67 (7%) Query: 52 ALRRYPNGEERCIACKLCEAICPA-----QAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 L +PN C C CE A + + G T +M KCI+C Sbjct: 110 ILSDHPNDCLTCPKCGNCELQTLALRFNIREMPFNGGELSPRKREITASIVRNMDKCIFC 169 Query: 107 GLCQEAC 113 C+ C Sbjct: 170 RRCESVC 176 >gi|282857149|ref|ZP_06266393.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyramidobacter piscolens W5455] gi|282584935|gb|EFB90259.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyramidobacter piscolens W5455] Length = 390 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 23/67 (34%), Gaps = 6/67 (8%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 EE+CI C C CP AIT+E I C+ C C C Sbjct: 196 VHLEVDEEKCIGCGRCFRNCPGHAITMEKDAAGK------TTSHIHAEPCLGCCECMTVC 249 Query: 114 PVDAIVE 120 P A+ Sbjct: 250 PTQAVGM 256 Score = 39.7 bits (91), Expect = 0.12, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 18/44 (40%) Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + P + V ++D KCI CG C CP AI + Sbjct: 182 MGCAPARGKKAQHAVHLEVDEEKCIGCGRCFRNCPGHAITMEKD 225 >gi|260171116|ref|ZP_05757528.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D2] gi|315919436|ref|ZP_07915676.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D2] gi|313693311|gb|EFS30146.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D2] Length = 588 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 5/89 (5%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVR 95 PF G SPR R A ++CI C+ CE++C Q + R T Sbjct: 131 PFNGGELSPRKREITA--SIVRNMDKCIFCRRCESVCNDVQTVGALGAIRRGFNTTIAPA 188 Query: 96 YDIDM--IKCIYCGLCQEACPVDAIVEGP 122 +D M +C YCG C CPV A+ E Sbjct: 189 FDRMMTESECTYCGQCVAVCPVGALTERD 217 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 5/67 (7%) Query: 52 ALRRYPNGEERCIACKLCEAICPA-----QAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 L +PN C C CE A + + G T +M KCI+C Sbjct: 99 ILSDHPNDCLTCPKCGNCELQTLALRFNIREMPFNGGELSPRKREITASIVRNMDKCIFC 158 Query: 107 GLCQEAC 113 C+ C Sbjct: 159 RRCESVC 165 >gi|257467683|ref|ZP_05631779.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium ulcerans ATCC 49185] gi|317061977|ref|ZP_07926462.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium ulcerans ATCC 49185] gi|313687653|gb|EFS24488.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium ulcerans ATCC 49185] Length = 585 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 3/68 (4%) Query: 59 GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQEACPV 115 +CI C+ CE +C Q I +G ++ + C +CG C CPV Sbjct: 148 DITKCIMCRRCETMCGDIQTCGILTGIDRGFNVVVNTAFNRNLIETDCTFCGQCVAVCPV 207 Query: 116 DAIVEGPN 123 A+ E N Sbjct: 208 GALYETDN 215 >gi|237715806|ref|ZP_04546287.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D1] gi|262407421|ref|ZP_06083969.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_22] gi|294646920|ref|ZP_06724541.1| putative ferredoxin hydrogenase [Bacteroides ovatus SD CC 2a] gi|294810789|ref|ZP_06769435.1| putative ferredoxin hydrogenase [Bacteroides xylanisolvens SD CC 1b] gi|229443453|gb|EEO49244.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D1] gi|262354229|gb|EEZ03321.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_22] gi|292637865|gb|EFF56262.1| putative ferredoxin hydrogenase [Bacteroides ovatus SD CC 2a] gi|294441977|gb|EFG10798.1| putative ferredoxin hydrogenase [Bacteroides xylanisolvens SD CC 1b] Length = 588 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 5/89 (5%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVR 95 PF G SPR R A ++CI C+ CE++C Q + R T Sbjct: 131 PFNGGELSPRKREITA--SIVRNMDKCIFCRRCESVCNDVQTVGALGAIRRGFNTTIAPA 188 Query: 96 YDIDM--IKCIYCGLCQEACPVDAIVEGP 122 +D M +C YCG C CPV A+ E Sbjct: 189 FDRMMTESECTYCGQCVAVCPVGALTERD 217 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 5/67 (7%) Query: 52 ALRRYPNGEERCIACKLCEAICPA-----QAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 L +PN C C CE A + + G T +M KCI+C Sbjct: 99 ILSDHPNDCLTCPKCGNCELQTLALRFNIREMPFNGGELSPRKREITASIVRNMDKCIFC 158 Query: 107 GLCQEAC 113 C+ C Sbjct: 159 RRCESVC 165 >gi|210620595|ref|ZP_03292143.1| hypothetical protein CLOHIR_00086 [Clostridium hiranonis DSM 13275] gi|210155309|gb|EEA86315.1| hypothetical protein CLOHIR_00086 [Clostridium hiranonis DSM 13275] Length = 211 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 8/72 (11%) Query: 47 FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 F GE ++ ++CI C C +CP I + + + I+ + C+ C Sbjct: 144 FGGESKEKKGYFVTDKCINCGRCIEVCPQNCIVED--------QKNWNQVKINHLNCLSC 195 Query: 107 GLCQEACPVDAI 118 G C E CPV+AI Sbjct: 196 GNCVEVCPVEAI 207 >gi|254468948|ref|ZP_05082354.1| electron transport complex protein RnfC [beta proteobacterium KB13] gi|207087758|gb|EDZ65041.1| electron transport complex protein RnfC [beta proteobacterium KB13] Length = 503 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 29/74 (39%), Gaps = 2/74 (2%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 CI C C +CPAQ E + D + CI CG C CP I Sbjct: 365 PCIRCTKCVEVCPAQLQPQELYWHAKSKQFEKLTEDYKLFDCIECGCCSYVCP-SNIPLV 423 Query: 122 PNFEFA-TETRQEL 134 + +A +E R +L Sbjct: 424 QYYRYAKSEIRDQL 437 >gi|188585874|ref|YP_001917419.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350561|gb|ACB84831.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus JW/NM-WN-LF] Length = 604 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 16/98 (16%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 L+Y F+ + + + G + + CI C +C+ CP AI+ + Sbjct: 502 TTLKY-FRDEYEAHVKENRCPA-----GTCKELIAFSITDDCIGCGVCKKSCPVGAISGD 555 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + ID +C+ CG+C AC DAI Sbjct: 556 KKE----------IHIIDQEECVKCGMCVSACKFDAIH 583 Score = 40.5 bits (93), Expect = 0.088, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 8/61 (13%) Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139 RC GT + + CI CG+C+++CPV AI + + ++ D+E Sbjct: 514 HVKENRCPAGTCKELIAFSITDDCIGCGVCKKSCPVGAI--------SGDKKEIHIIDQE 565 Query: 140 R 140 Sbjct: 566 E 566 >gi|167761403|ref|ZP_02433530.1| hypothetical protein CLOSCI_03813 [Clostridium scindens ATCC 35704] gi|167661069|gb|EDS05199.1| hypothetical protein CLOSCI_03813 [Clostridium scindens ATCC 35704] Length = 314 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 30/86 (34%), Gaps = 15/86 (17%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L Y + +C++C C C + + +CI CG C + Sbjct: 235 LLNYNVDKHKCVSCGKCSRTCKMD---------------VDITKNTSHTECIRCGECIKV 279 Query: 113 CPVDAIVEGPNFEFATETRQELYYDK 138 CP AI + E +++ +K Sbjct: 280 CPAKAISVHWGVKNPVENKEDKIINK 305 >gi|150006276|ref|YP_001301020.1| pyruvate-flavodoxin oxidoreductase [Bacteroides vulgatus ATCC 8482] gi|294776528|ref|ZP_06742002.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides vulgatus PC510] gi|149934700|gb|ABR41398.1| pyruvate-flavodoxin oxidoreductase [Bacteroides vulgatus ATCC 8482] gi|294449657|gb|EFG18183.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides vulgatus PC510] Length = 1181 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 31/90 (34%), Gaps = 15/90 (16%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGP 84 E+G+ RG A N E CI C C +CP A Sbjct: 667 EQGTAQYEKRGVAAFVPEWN-AENCIQCNKCAYVCPHASIRPFVLDAEEQKGADFETLKA 725 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 T R +D++ C+ CG C + CP Sbjct: 726 VGKQFDGMTFRIQVDVLDCLGCGNCADVCP 755 >gi|197117222|ref|YP_002137649.1| hypothetical protein Gbem_0830 [Geobacter bemidjiensis Bem] gi|197086582|gb|ACH37853.1| conserved hypothetical protein [Geobacter bemidjiensis Bem] Length = 435 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 2/65 (3%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C CPA+A+ + S R D +C+ CG+C C AI Sbjct: 290 TECSGCGRCIDACPAEAVRLISANAPQHPWLRRCVQD--SERCLGCGVCVRVCRSAAITL 347 Query: 121 GPNFE 125 P E Sbjct: 348 KPRAE 352 >gi|150020389|ref|YP_001305743.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429] gi|149792910|gb|ABR30358.1| NADH dehydrogenase (quinone) [Thermosipho melanesiensis BI429] Length = 623 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 33/69 (47%), Gaps = 10/69 (14%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 AL++Y E C +C LC CP AI+ E G Y ID KCI CG+C E Sbjct: 564 ALKKYVINPELCKSCSLCARACPQNAISGERGKP----------YVIDQEKCIKCGICFE 613 Query: 112 ACPVDAIVE 120 C +AI Sbjct: 614 KCKFNAIEL 622 >gi|325497184|gb|EGC95043.1| electron transport complex protein RnfB [Escherichia fergusonii ECD227] Length = 192 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI + + + C C LC + CP I Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTQCI 162 Query: 119 VEGPNFEFATETRQEL 134 P E + +L Sbjct: 163 SLQPVAETPDSWKWDL 178 Score = 35.5 bits (80), Expect = 2.3, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C C +ACPVDAI Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132 >gi|300921315|ref|ZP_07137682.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli MS 115-1] gi|300411734|gb|EFJ95044.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli MS 115-1] Length = 192 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI + + + C C LC + CP I Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSELCTGCNLCVDPCPTHCI 162 Query: 119 VEGPNFEFATETRQEL 134 P E + +L Sbjct: 163 SLQPVAETPDSWKWDL 178 Score = 35.5 bits (80), Expect = 2.6, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C C +ACPVDAI Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132 >gi|269215967|ref|ZP_06159821.1| ferredoxin-type protein NapH [Slackia exigua ATCC 700122] gi|269130226|gb|EEZ61304.1| ferredoxin-type protein NapH [Slackia exigua ATCC 700122] Length = 308 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 28/74 (37%), Gaps = 7/74 (9%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G L ERC+ C C A+C P DG + C+ CG Sbjct: 219 GTFGLVSVKMDAERCVHCDACRAVCLCD-------PEILDGVLDEGADHVSAGDCMLCGR 271 Query: 109 CQEACPVDAIVEGP 122 C + CP DA+ GP Sbjct: 272 CIDVCPTDALSIGP 285 >gi|226950228|ref|YP_002805319.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum A2 str. Kyoto] gi|226840903|gb|ACO83569.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum A2 str. Kyoto] Length = 411 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 7/110 (6%) Query: 15 EFVGAFFLCLRY-FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + + ++ F+ + K + EE C+ C C C Sbjct: 295 DMIEGLSYYMKEKGFEKLEDMVGLANKNIIPAEDLDRGYIVYPKFNEENCVGCGRCYISC 354 Query: 74 PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 G + + + ++ C+ C LC CPV I +G Sbjct: 355 YDG------GHQAIKWDGKNRKPILEKENCVGCHLCANVCPVQCISKGEI 398 >gi|170761060|ref|YP_001786579.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum A3 str. Loch Maree] gi|169408049|gb|ACA56460.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum A3 str. Loch Maree] Length = 1172 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 44/126 (34%), Gaps = 24/126 (19%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA---QAITIESGPRCHDGTRRTV--- 94 G+TS RG + ++CI C C ICP +A + + +R Sbjct: 668 GTTSYEKRGIAVMIPEWQ-IDKCIQCNQCSYICPHSVIRAYLLNKDEKEKAPSRFETKKA 726 Query: 95 ----------RYDIDMIKCIYCGLCQEACPVD--AIVEGP---NFEFATETRQ--ELYYD 137 R I + C CG C + CP A++ E +E + Sbjct: 727 AGKGLEELGYRIQISPLDCTGCGNCADVCPAPGKALIMKNAEEQIEMQSENWEFGLNITT 786 Query: 138 KERLLN 143 KE L++ Sbjct: 787 KENLMD 792 >gi|270308756|ref|YP_003330814.1| reductive dehalogenase [Dehalococcoides sp. VS] gi|270154648|gb|ACZ62486.1| reductive dehalogenase [Dehalococcoides sp. VS] Length = 491 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 3/74 (4%) Query: 56 YPNGEERCIACKLCEAICPAQAITIE---SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 G E C C +C CP AI+ + + + DM C +C +CQ Sbjct: 372 DFGGREFCKTCGICADACPMGAISKDEPTWDAAKPYQYGGYLTWRTDMAVCSHCPVCQGT 431 Query: 113 CPVDAIVEGPNFEF 126 CP +A + E Sbjct: 432 CPFNAFDKSGIHEL 445 >gi|160887580|ref|ZP_02068583.1| hypothetical protein BACOVA_05602 [Bacteroides ovatus ATCC 8483] gi|156107991|gb|EDO09736.1| hypothetical protein BACOVA_05602 [Bacteroides ovatus ATCC 8483] Length = 588 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 5/89 (5%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVR 95 PF G SPR R A ++CI C+ CE++C Q + R T Sbjct: 131 PFNGGELSPRKREITA--SIVRNMDKCIFCRRCESVCNDVQTVGALGAIRRGFNTTIAPA 188 Query: 96 YDIDM--IKCIYCGLCQEACPVDAIVEGP 122 +D M +C YCG C CPV A+ E Sbjct: 189 FDRMMTESECTYCGQCVAVCPVGALTERD 217 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 5/67 (7%) Query: 52 ALRRYPNGEERCIACKLCEAICPA-----QAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 L +PN C C CE A + + G T +M KCI+C Sbjct: 99 ILSDHPNDCLTCPKCGNCELQTLALRFNIREMPFNGGELSPRKREITASIVRNMDKCIFC 158 Query: 107 GLCQEAC 113 C+ C Sbjct: 159 RRCESVC 165 >gi|126730473|ref|ZP_01746284.1| formate dehydrogenase, alpha subunit [Sagittula stellata E-37] gi|126709206|gb|EBA08261.1| formate dehydrogenase, alpha subunit [Sagittula stellata E-37] Length = 939 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 6/81 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114 + CI C LC C + + G +D + C+ CG C +ACP Sbjct: 159 NLDACIQCGLCVRACR-EVQVNDVIGMAGRGHDAYPVFDLGDDMGASTCVACGECVQACP 217 Query: 115 VDAIVEGPNFEFATE-TRQEL 134 A++ A E R + Sbjct: 218 TGALMPSSVMNDAQEGDRADF 238 Score = 33.9 bits (76), Expect = 7.8, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 19/56 (33%), Gaps = 1/56 (1%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL-CQ 110 G C+AC C CP A+ S R C +CG+ CQ Sbjct: 199 DDMGASTCVACGECVQACPTGALMPSSVMNDAQEGDRADFDQETKSVCPFCGVGCQ 254 >gi|18976905|ref|NP_578262.1| indolepyruvate ferredoxin oxidoreductase subunit a [Pyrococcus furiosus DSM 3638] gi|18892520|gb|AAL80657.1| indolepyruvate ferredoxin oxidoreductase subunit a [Pyrococcus furiosus DSM 3638] Length = 646 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 9/79 (11%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R Y EE+C CK+C AI ++ + +D + C CG Sbjct: 577 REGKQWPIYQVNEEKCTGCKVCINAYGCPAIYWDAEKKKA---------RVDPLMCWGCG 627 Query: 108 LCQEACPVDAIVEGPNFEF 126 C + CP A + E Sbjct: 628 GCAQVCPFGAFEKVREGEL 646 >gi|187733860|ref|YP_001880383.1| electron transport complex protein RnfB [Shigella boydii CDC 3083-94] gi|226735434|sp|B2U2C7|RNFB_SHIB3 RecName: Full=Electron transport complex protein rnfB gi|187430852|gb|ACD10126.1| electron transport complex, RnfABCDGE type, B subunit [Shigella boydii CDC 3083-94] Length = 192 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI + + + C C LC + CP I Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTHCI 162 Query: 119 VEGPNFEFATETRQEL 134 P E + +L Sbjct: 163 SLQPVAETPDSWKWDL 178 Score = 35.5 bits (80), Expect = 2.6, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C C +ACPVDAI Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132 >gi|320181353|gb|EFW56272.1| Electron transport complex protein RnfB [Shigella boydii ATCC 9905] Length = 192 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI + + + C C LC + CP I Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTHCI 162 Query: 119 VEGPNFEFATETRQEL 134 P E + +L Sbjct: 163 SLQPVAETPDSWKWDL 178 Score = 35.5 bits (80), Expect = 2.6, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C C +ACPVDAI Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132 >gi|297527425|ref|YP_003669449.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Staphylothermus hellenicus DSM 12710] gi|297256341|gb|ADI32550.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Staphylothermus hellenicus DSM 12710] Length = 93 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 10/65 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +C+ C LCE CP I +E I+ C CG+C + CPV+AI Sbjct: 38 DNSKCVKCFLCEIYCPVNVIRVEPE----------TGVTINYDYCKGCGVCVDVCPVNAI 87 Query: 119 VEGPN 123 P Sbjct: 88 KLVPE 92 >gi|253583179|ref|ZP_04860377.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium varium ATCC 27725] gi|251833751|gb|EES62314.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium varium ATCC 27725] Length = 585 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 3/68 (4%) Query: 59 GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQEACPV 115 +CI C+ CE +C Q I +G ++ + C +CG C CPV Sbjct: 148 DITKCIMCRRCETMCGDIQTCGILTGIDRGFNVVVNTAFNRNLIETDCTFCGQCVAVCPV 207 Query: 116 DAIVEGPN 123 A+ E N Sbjct: 208 GALYETDN 215 >gi|161503449|ref|YP_001570562.1| electron transport complex protein RnfB [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|189043387|sp|A9MRW7|RNFB_SALAR RecName: Full=Electron transport complex protein rnfB gi|160864796|gb|ABX21419.1| hypothetical protein SARI_01523 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 192 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI + + + C C LC + CP I Sbjct: 113 DENHCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTHCI 162 Query: 119 VEGPNFEFATETRQEL 134 P E + +L Sbjct: 163 ELRPVNETPDSWKWDL 178 Score = 35.5 bits (80), Expect = 2.4, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C C +ACPVDAI Sbjct: 112 IDENHCIGCTKCIQACPVDAI 132 >gi|327192567|gb|EGE59517.1| dihydropyrimidine dehydrogenase protein [Rhizobium etli CNPAF512] Length = 437 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 32/76 (42%), Gaps = 6/76 (7%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI C C C + ++ +G R +++ +C+ Sbjct: 330 QYLNLNYIAKAKIDQDACIKCGRCYIACED--TSHQAITNVVNGLR---HFEVMDEECVG 384 Query: 106 CGLCQEACPV-DAIVE 120 C LC CPV + I Sbjct: 385 CNLCVSVCPVENCITM 400 >gi|300727115|ref|ZP_07060534.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Prevotella bryantii B14] gi|299775659|gb|EFI72250.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Prevotella bryantii B14] Length = 1196 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 29/135 (21%), Positives = 42/135 (31%), Gaps = 25/135 (18%) Query: 12 FLKEFVGAFFLCLRYFFK-----AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIAC 66 F+KE V K T++ ++ G+ + RG N E CI C Sbjct: 637 FVKELVRPMNAQAGDLLKVSDFVKHNTVDGTWQNGTAAYEKRGVETFVPVWN-VENCIQC 695 Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK---------------CIYCGLCQE 111 C +CP A+ + DI K C+ CG C + Sbjct: 696 NKCSFVCPHAAVRPFVLDEAEKANFQGATQDILAPKALKGMNFRIQVSVLDCLGCGNCAD 755 Query: 112 ACP----VDAIVEGP 122 CP A+ P Sbjct: 756 VCPGKKGEKALKMVP 770 >gi|289191512|ref|YP_003457453.1| archaeoflavoprotein, MJ0208 family [Methanocaldococcus sp. FS406-22] gi|288937962|gb|ADC68717.1| archaeoflavoprotein, MJ0208 family [Methanocaldococcus sp. FS406-22] Length = 238 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 11/69 (15%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 Y + +C C C +CP AI +R +I + KC+ CG C++ CP Sbjct: 143 PYAIDKNKCKLCLKCINVCPNGAIA-----------KRDDFVEISLPKCLGCGNCKKVCP 191 Query: 115 VDAIVEGPN 123 +AI+EG Sbjct: 192 YNAIIEGKE 200 Score = 35.1 bits (79), Expect = 3.6, Method: Composition-based stats. Identities = 12/29 (41%), Positives = 14/29 (48%) Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 Y ID KC C C CP AI + +F Sbjct: 144 YAIDKNKCKLCLKCINVCPNGAIAKRDDF 172 >gi|225028462|ref|ZP_03717654.1| hypothetical protein EUBHAL_02737 [Eubacterium hallii DSM 3353] gi|224954212|gb|EEG35421.1| hypothetical protein EUBHAL_02737 [Eubacterium hallii DSM 3353] Length = 263 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 27/86 (31%), Gaps = 12/86 (13%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 G+ E CI C LC +CP +AI+ + + Sbjct: 166 EVPGTFPYTKPPMGEFPFKVETNEYCIYCMLCADVCPVKAISESNPK------------E 213 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPN 123 ID C+ CG C CP A Sbjct: 214 IDSSICLRCGSCLRICPTQAKYFTEE 239 Score = 38.5 bits (88), Expect = 0.32, Method: Composition-based stats. Identities = 13/26 (50%), Positives = 14/26 (53%) Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEF 126 CIYC LC + CPV AI E E Sbjct: 189 EYCIYCMLCADVCPVKAISESNPKEI 214 >gi|206895390|ref|YP_002246550.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit [Coprothermobacter proteolyticus DSM 5265] gi|206738007|gb|ACI17085.1| NADH:ubiquinone oxidoreductase, nadh-binding (51 kd) subunit [Coprothermobacter proteolyticus DSM 5265] Length = 596 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 10/68 (14%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 AL Y ++C C LC CP AI+ E + I+ CI CG C Sbjct: 536 QALLSYTIVADKCKGCGLCARNCPVNAISGELKQP----------HVINQEACIKCGTCF 585 Query: 111 EACPVDAI 118 E CP AI Sbjct: 586 EKCPFGAI 593 Score = 40.9 bits (94), Expect = 0.055, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 17/40 (42%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 I + + Y I KC CGLC CPV+AI Sbjct: 524 HINQKKCPAGVCQALLSYTIVADKCKGCGLCARNCPVNAI 563 >gi|241205971|ref|YP_002977067.1| dihydropyrimidine dehydrogenase [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240859861|gb|ACS57528.1| dihydroorotate dehydrogenase family protein [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 437 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 32/94 (34%), Gaps = 6/94 (6%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI C C A S + +++ +C+ Sbjct: 330 QYLNLNYIAKAKIDQDACIKCGRCYI-----ACEDTSHQAITNFVDGARHFEVVDEECVG 384 Query: 106 CGLCQEACPV-DAIVEGPNFEFATETRQELYYDK 138 C LC CPV + I A + R D Sbjct: 385 CNLCVSVCPVENCITMEQLPAGALDKRTGRVVDP 418 >gi|163749862|ref|ZP_02157107.1| iron-sulfur cluster-binding protein [Shewanella benthica KT99] gi|161330376|gb|EDQ01355.1| iron-sulfur cluster-binding protein [Shewanella benthica KT99] Length = 561 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 9/74 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C C + CP QA+T + C+ CGLC++ACP +AI Sbjct: 427 NTDSCTLCLSCVSTCPTQALTDGGDKPA---------LNFLEQDCVQCGLCEKACPENAI 477 Query: 119 VEGPNFEFATETRQ 132 + RQ Sbjct: 478 SLTSQMNLDKQARQ 491 Score = 38.9 bits (89), Expect = 0.21, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 11/53 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C CPA AI + +ID C G C ACP AI Sbjct: 203 CNRCLNFCPADAIQSIN-----------KMIEIDPYLCHGAGSCTNACPTGAI 244 Score = 35.5 bits (80), Expect = 2.4, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY--DIDMIKCIYCG 107 + C+ C LCE CP AI++ S R+T++ D +CI CG Sbjct: 460 QDCVQCGLCEKACPENAISLTSQMNLDKQARQTIKTLKQEDPFECIRCG 508 >gi|145519287|ref|XP_001445510.1| hypothetical protein [Paramecium tetraurelia strain d4-2] gi|124412965|emb|CAK78113.1| unnamed protein product [Paramecium tetraurelia] Length = 588 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 1/75 (1%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 E LR ++RC + C C +S C + T+++ I+ CI C Sbjct: 1 MEESKLRIAIINKDRCKP-QRCALECKKNCPINKSEKLCIEVTKQSKTCTINESLCIGCA 59 Query: 108 LCQEACPVDAIVEGP 122 +C + CP AI+ Sbjct: 60 ICVKKCPFKAIMIIN 74 >gi|77918446|ref|YP_356261.1| NADH dehydrogenase I subunit F [Pelobacter carbinolicus DSM 2380] gi|77544529|gb|ABA88091.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Pelobacter carbinolicus DSM 2380] Length = 617 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 15/97 (15%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 LRY F+ + + ++ L Y E++C+ C +C CP AIT E Sbjct: 533 TTLRY-FRNEYEAHINEKRCPAGVC----PELLTYAIVEDKCVGCGVCIKACPVGAITGE 587 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + ID KC+ CG C C DAI Sbjct: 588 KKAA----------HTIDASKCVKCGACVPKCKFDAI 614 >gi|88799939|ref|ZP_01115511.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Reinekea sp. MED297] gi|88777370|gb|EAR08573.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Reinekea sp. MED297] Length = 601 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 32/96 (33%), Gaps = 2/96 (2%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI C LCE CP + + + + CI CG C CP I Sbjct: 375 EDSPCIRCGLCEQACPVDLLPQQMHWASKHRELESAEL-HSLEDCIECGACAYVCP-SRI 432 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESEIVR 154 F +A ++ E R+E+ R Sbjct: 433 PLVQYFRYAKGELKQERQQHEESERARIRFENRQAR 468 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 2/56 (3%) Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 A ++S T++ + I+ CI CGLC++ACPVD + +A++ R+ Sbjct: 353 APIMKSTNCLLAPTKKELPPAIEDSPCIRCGLCEQACPVDLLP--QQMHWASKHRE 406 >gi|150389463|ref|YP_001319512.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [Alkaliphilus metalliredigens QYMF] gi|149949325|gb|ABR47853.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Alkaliphilus metalliredigens QYMF] Length = 1176 Score = 49.7 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 44/141 (31%), Gaps = 33/141 (23%) Query: 28 FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH 87 FK +P G+T+ RG + ++CI C C ICP I Sbjct: 657 FKGMEDGTFP--MGTTAYEKRGIAIIVPQWQ-TDKCIQCNQCAYICPHSVIRPFLLDEEE 713 Query: 88 DGTR----------------RTVRYDIDMIKCIYCGLCQEAC--PVDAIVEGP------- 122 + R I C CG C + C P A+V Sbjct: 714 ISKKPETFETKDAIGKGLEGYQYRIQISPYDCTGCGNCADICPAPKKALVMVDAEQEMSK 773 Query: 123 ---NFEFATE--TRQELYYDK 138 N+EF+ E T ++ K Sbjct: 774 QEENWEFSAEHLTYKDHLMTK 794 >gi|298481911|ref|ZP_07000100.1| hydrogenase large subunit HymC [Bacteroides sp. D22] gi|298271775|gb|EFI13347.1| hydrogenase large subunit HymC [Bacteroides sp. D22] Length = 588 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 5/89 (5%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVR 95 PF G SPR R A ++CI C+ CE++C Q + R T Sbjct: 131 PFNGGELSPRKREITA--SIVRNMDKCIFCRRCESVCNDVQTVGALGAIRRGFNTTIAPA 188 Query: 96 YDIDM--IKCIYCGLCQEACPVDAIVEGP 122 +D M +C YCG C CPV A+ E Sbjct: 189 FDRMMTESECTYCGQCVAVCPVGALTERD 217 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 5/67 (7%) Query: 52 ALRRYPNGEERCIACKLCEAICPA-----QAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 L +PN C C CE A + + G T +M KCI+C Sbjct: 99 ILSDHPNDCLTCPKCGNCELQTLALRFNIREMPFNGGELSPRKREITASIVRNMDKCIFC 158 Query: 107 GLCQEAC 113 C+ C Sbjct: 159 RRCESVC 165 >gi|293371347|ref|ZP_06617784.1| putative ferredoxin hydrogenase [Bacteroides ovatus SD CMC 3f] gi|292633707|gb|EFF52262.1| putative ferredoxin hydrogenase [Bacteroides ovatus SD CMC 3f] Length = 588 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 29/89 (32%), Positives = 38/89 (42%), Gaps = 5/89 (5%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVR 95 PF G SPR R A ++CI C+ CE++C Q + R T Sbjct: 131 PFNGGELSPRKREITA--SIVRNMDKCIFCRRCESVCNDVQTVGALGAIRRGFNTTIAPA 188 Query: 96 YDIDM--IKCIYCGLCQEACPVDAIVEGP 122 +D M +C YCG C CPV A+ E Sbjct: 189 FDRMMTESECTYCGQCVAVCPVGALTERD 217 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 5/67 (7%) Query: 52 ALRRYPNGEERCIACKLCEAICPA-----QAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 L +PN C C CE A + + G T +M KCI+C Sbjct: 99 ILSDHPNDCLTCPKCGNCELQTLALRFNIREMPFNGGELSPRKREITASIVRNMDKCIFC 158 Query: 107 GLCQEAC 113 C+ C Sbjct: 159 RRCESVC 165 >gi|317131978|ref|YP_004091292.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Ethanoligenens harbinense YUAN-3] gi|315469957|gb|ADU26561.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Ethanoligenens harbinense YUAN-3] Length = 368 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 11/62 (17%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E+C+ C C C AIT+ G ID +C+ CG C ACP D Sbjct: 191 HVHTEKCVGCGTCRKQCAHDAITLTGGKAS-----------IDHNRCVGCGRCIGACPTD 239 Query: 117 AI 118 A+ Sbjct: 240 AV 241 >gi|157363741|ref|YP_001470508.1| hypothetical protein Tlet_0878 [Thermotoga lettingae TMO] gi|157314345|gb|ABV33444.1| protein of unknown function DUF362 [Thermotoga lettingae TMO] Length = 346 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 38/96 (39%), Gaps = 17/96 (17%) Query: 33 TINYP--FEKGSTSPRFRG--EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88 TI P E + +R ++RC+ C++CE CPA+AI I Sbjct: 263 TIKLPVTAETLPVPGMLKNLARKIIRVPKISKKRCVQCRICEERCPAKAIDI-------- 314 Query: 89 GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 Y I KCI C +C E CP AI F Sbjct: 315 -----SNYFISYNKCIRCYVCHEVCPRGAIDLIRKF 345 >gi|256371616|ref|YP_003109440.1| formate dehydrogenase, alpha subunit [Acidimicrobium ferrooxidans DSM 10331] gi|256008200|gb|ACU53767.1| formate dehydrogenase, alpha subunit [Acidimicrobium ferrooxidans DSM 10331] Length = 985 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 30/84 (35%), Gaps = 5/84 (5%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID- 99 T + + + Y +CI C C C + E+ R V +D Sbjct: 125 PFTPKPYEVDASHPMYRYDPSQCILCGRCVQACQ-EVQVNETLSIDWSLERPRVVWDGGK 183 Query: 100 ---MIKCIYCGLCQEACPVDAIVE 120 C+ CG C CP +A++E Sbjct: 184 PAGESSCVSCGHCVSVCPCNALME 207 Score = 37.4 bits (85), Expect = 0.64, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 9/65 (13%) Query: 58 NGEERCIAC----KLCEAICPAQAITIESG-----PRCHDGTRRTVRYDIDMIKCIYCGL 108 N E C C C + + + P+ ++ Y D +CI CG Sbjct: 93 NHELYCTVCDNSNGDCVLHESVRDLGVNEELVPFTPKPYEVDASHPMYRYDPSQCILCGR 152 Query: 109 CQEAC 113 C +AC Sbjct: 153 CVQAC 157 >gi|238785614|ref|ZP_04629593.1| Electron transport complex protein rnfC [Yersinia bercovieri ATCC 43970] gi|238713501|gb|EEQ05534.1| Electron transport complex protein rnfC [Yersinia bercovieri ATCC 43970] Length = 556 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 3/103 (2%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C LC CPA + + G + ++ CI CG C CP I Sbjct: 351 QSCIRCGLCVDACPAG-LLPQQLYWFSRGEEHEKARNHNLFDCIECGACAYVCP-SNIPL 408 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + + L + R R+E++ R + + R Sbjct: 409 VQYYRQEKAEIRALDIESARAAEAKARFEAKQAR-LAREKLAR 450 >gi|225410187|ref|ZP_03761376.1| hypothetical protein CLOSTASPAR_05409 [Clostridium asparagiforme DSM 15981] gi|225042291|gb|EEG52537.1| hypothetical protein CLOSTASPAR_05409 [Clostridium asparagiforme DSM 15981] Length = 683 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 30/105 (28%), Gaps = 15/105 (14%) Query: 29 KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88 K + P + E++CI C C +C + Sbjct: 7 KRMSKHLSPEVRVPIERDNVSIFR------DEDKCIKCGQCRDMCRDYIGVLGHYSLEAT 60 Query: 89 GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 G R CI CG C CPV +I E + E + Sbjct: 61 GDR---------AVCINCGQCANVCPVGSISEVKEYRQVAEAISD 96 >gi|218890264|ref|YP_002439128.1| electron transport complex protein RnfC [Pseudomonas aeruginosa LESB58] gi|218770487|emb|CAW26252.1| probable ferredoxin [Pseudomonas aeruginosa LESB58] Length = 774 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 10/97 (10%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 CI C C +CP + + G ++ CI CG C CP +I Sbjct: 368 PCIRCGDCAQVCPVS-LLPQQLHFFALGNEHEQLLAHNLFDCIECGACAYVCP-SSIPLV 425 Query: 122 PNFEFAT-ETRQELYYDKERLL---NNGDRWESEIVR 154 + + E R++ +++LL + +R+E R Sbjct: 426 QYYRASKAEIREQ----RQKLLKAEQSRERFEQRQAR 458 >gi|168179227|ref|ZP_02613891.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum NCTC 2916] gi|182669884|gb|EDT81860.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum NCTC 2916] Length = 411 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/110 (16%), Positives = 33/110 (30%), Gaps = 7/110 (6%) Query: 15 EFVGAFFLCLRY-FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + + ++ F+ + K + EE C+ C C C Sbjct: 295 DMIEGLSYYMKEKGFEKLEDMVGLANKNIIPAEDLDRGYIVYPKFNEENCVGCGRCYISC 354 Query: 74 PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 G + + + ++ C+ C LC CPV I +G Sbjct: 355 YDG------GHQAIKWDGKNRKPILEKENCVGCHLCANVCPVQCISKGEI 398 >gi|167770142|ref|ZP_02442195.1| hypothetical protein ANACOL_01485 [Anaerotruncus colihominis DSM 17241] gi|167667464|gb|EDS11594.1| hypothetical protein ANACOL_01485 [Anaerotruncus colihominis DSM 17241] Length = 479 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDG------TRRTVRYDIDMIKCIYCGLCQ 110 +E+C+ C C CP AI + P + R ID KCI CG C Sbjct: 126 HIDQEKCVECGRCATACPYSAIMKYTRPCENACKIKAISMHRDNSAKIDNDKCIACGACV 185 Query: 111 EACPVDAI 118 CP AI Sbjct: 186 YQCPFGAI 193 Score = 41.6 bits (96), Expect = 0.036, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 26/68 (38%), Gaps = 13/68 (19%) Query: 54 RRYPNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + C C CE CP AI++ G ID KC+ CG C Sbjct: 92 VNRYHVGSACRGCIAHRCEHACPTGAISVHDGKAH-----------IDQEKCVECGRCAT 140 Query: 112 ACPVDAIV 119 ACP AI+ Sbjct: 141 ACPYSAIM 148 >gi|148925645|ref|ZP_01809333.1| pyruvate-flavodoxin oxidoreductase [Campylobacter jejuni subsp. jejuni CG8486] gi|145845655|gb|EDK22746.1| pyruvate-flavodoxin oxidoreductase [Campylobacter jejuni subsp. jejuni CG8486] Length = 1151 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 43/133 (32%), Gaps = 30/133 (22%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA------------------QAIT 79 FE G+T RG + CI C C ++CP Sbjct: 668 FEHGTTEYEKRGVGVMVPRWIE-ANCIQCNQCASVCPHAVIRPFLINDEEMANAPRGVKD 726 Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV--DAIVEGP--------NFEFATE 129 + G + + + + + C C LC CP ++V P E A Sbjct: 727 HALEAKGTKGEKLSFKIQVSPLDCTGCELCVHECPTKEKSLVMVPLQEEMDFGEQENADY 786 Query: 130 TRQELYYDKERLL 142 +E+ Y K+ +L Sbjct: 787 LFKEITY-KDDIL 798 >gi|57641548|ref|YP_184026.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit F [Thermococcus kodakarensis KOD1] gi|57159872|dbj|BAD85802.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit F [Thermococcus kodakarensis KOD1] Length = 600 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 10/66 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L RY ++C C C CPA AI+ E R + ID CI CG C E Sbjct: 537 LIRYVIITDKCTGCTACAIFCPANAISGE----------RLKPHFIDQEACIKCGTCYEV 586 Query: 113 CPVDAI 118 C +AI Sbjct: 587 CRFNAI 592 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 16/39 (41%) Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +G + +RY I KC C C CP +AI Sbjct: 524 HINGRCPAKVCKPLIRYVIITDKCTGCTACAIFCPANAI 562 >gi|66356990|ref|XP_625673.1| pyruvate:ferredoxin oxidoreductase/NADPH-cytochrome P450 reductase PNO [Cryptosporidium parvum Iowa II] gi|46226683|gb|EAK87662.1| pyruvate:ferredoxin oxidoreductase/NADPH-cytochrome P450 reductase PNO [Cryptosporidium parvum Iowa II] Length = 1934 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 36/111 (32%), Gaps = 22/111 (19%) Query: 27 FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA--------- 77 F T+ G+T+ RG A+ +C C C +CP A Sbjct: 688 MFDPTGTVPL----GTTAYEKRG-IAMSIPIVDMNKCTQCNYCSIVCPHAAIRPFLLDEA 742 Query: 78 --------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + I + + R + + C C LC ACP DA+ Sbjct: 743 EFKNAPETMHIPKAKGGQEFSSYYYRIQVTPLDCTGCELCVHACPDDALHM 793 >gi|329568381|gb|EGG50190.1| pyruvate synthase [Enterococcus faecalis TX1467] Length = 1229 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96 AL +RC C C +CP AI R Sbjct: 681 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 740 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125 + + C CGLC EACP A+V P E Sbjct: 741 QVSVKDCTGCGLCVEACPAKGKALVMKPYDE 771 >gi|320354646|ref|YP_004195985.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfobulbus propionicus DSM 2032] gi|320123148|gb|ADW18694.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfobulbus propionicus DSM 2032] Length = 1191 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 34/128 (26%), Gaps = 32/128 (25%) Query: 14 KEFVGAFFLCLRYF---------FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64 EFV + + + +P +TS + A++ E CI Sbjct: 640 PEFVK--TVTAKMMEGHGEDIPVSQFPNDGRWP---TATSQWEKRNIAVQVSCWDAETCI 694 Query: 65 ACKLCEAICPAQAITI------------------ESGPRCHDGTRRTVRYDIDMIKCIYC 106 C C +CP I + + + I C C Sbjct: 695 QCGRCSLVCPHGCIRMKVATPEALAAAGADASFKTADAVGKEFKDMKFTMQISTADCCGC 754 Query: 107 GLCQEACP 114 LC CP Sbjct: 755 TLCVTVCP 762 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 8/20 (40%), Positives = 8/20 (40%) Query: 101 IKCIYCGLCQEACPVDAIVE 120 CI CG C CP I Sbjct: 691 ETCIQCGRCSLVCPHGCIRM 710 >gi|307270215|ref|ZP_07551528.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX4248] gi|306513431|gb|EFM82050.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX4248] Length = 1243 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96 AL +RC C C +CP AI R Sbjct: 695 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 754 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125 + + C CGLC EACP A+V P E Sbjct: 755 QVSVKDCTGCGLCVEACPAKGKALVMKPYDE 785 >gi|307287351|ref|ZP_07567412.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX0109] gi|306501592|gb|EFM70887.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX0109] gi|315164702|gb|EFU08719.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis TX1302] Length = 1243 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96 AL +RC C C +CP AI R Sbjct: 695 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 754 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125 + + C CGLC EACP A+V P E Sbjct: 755 QVSVKDCTGCGLCVEACPAKGKALVMKPYDE 785 >gi|294780373|ref|ZP_06745742.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis PC1.1] gi|294452637|gb|EFG21070.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterococcus faecalis PC1.1] Length = 1229 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96 AL +RC C C +CP AI R Sbjct: 681 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 740 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125 + + C CGLC EACP A+V P E Sbjct: 741 QVSVKDCTGCGLCVEACPAKGKALVMKPYDE 771 >gi|289676762|ref|ZP_06497652.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas syringae pv. syringae FF5] Length = 291 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 28/75 (37%), Gaps = 10/75 (13%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 RG + E CI C C CP AI S + + + + +C C Sbjct: 76 RGTAPAQVAFIREAECIGCTKCIQACPVDAILGAS----------RLMHTVIIDECTGCD 125 Query: 108 LCQEACPVDAIVEGP 122 LC CPVD I P Sbjct: 126 LCVAPCPVDCIEMHP 140 >gi|297526981|ref|YP_003669005.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Staphylothermus hellenicus DSM 12710] gi|297255897|gb|ADI32106.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Staphylothermus hellenicus DSM 12710] Length = 96 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 11/65 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +C+ C LC CP AI + I+ C CG+C CPV+AI Sbjct: 40 DLNKCVKCMLCWIFCPDMAIVWDGEKIV-----------INYDYCKGCGICAHECPVNAI 88 Query: 119 VEGPN 123 P Sbjct: 89 TMVPE 93 >gi|260773218|ref|ZP_05882134.1| electron transport complex protein RnfC [Vibrio metschnikovii CIP 69.14] gi|260612357|gb|EEX37560.1| electron transport complex protein RnfC [Vibrio metschnikovii CIP 69.14] Length = 734 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 38/106 (35%), Gaps = 13/106 (12%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C LC CPA + + ++++ CI CG C CP I Sbjct: 378 CIRCGLCADACPAS-LLPQQLQWHAKAEEYDKCEELNLKDCIECGACAYVCP-SEIPLVQ 435 Query: 123 NF-----EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + E T R+ ++ + R+E + R + D R Sbjct: 436 YYRQAKAEIRTRKREAEAAERAK-----QRFEEKKAR-MERDKAER 475 >gi|257079471|ref|ZP_05573832.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis JH1] gi|256987501|gb|EEU74803.1| pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecalis JH1] Length = 1223 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 16/91 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRY 96 AL +RC C C +CP AI R Sbjct: 675 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMTEAPEGFIVRDLRGADGLKYRI 734 Query: 97 DIDMIKCIYCGLCQEACPV--DAIVEGPNFE 125 + + C CGLC EACP A+V P E Sbjct: 735 QVSVKDCTGCGLCVEACPAKGKALVMKPYDE 765 >gi|240143434|ref|ZP_04742035.1| iron-sulfur cluster-binding protein [Roseburia intestinalis L1-82] gi|257204625|gb|EEV02910.1| iron-sulfur cluster-binding protein [Roseburia intestinalis L1-82] gi|291534388|emb|CBL07500.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Roseburia intestinalis M50/1] Length = 288 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 22/97 (22%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++CI C +CE C AI E I+ +C YCG C ++CP DA Sbjct: 164 DKCIGCGVCEKACRQGAIKCEGNKV-----------TINRDQCNYCGRCVKSCPTDAWEG 212 Query: 121 GPNFEFAT--------ETRQEL---YYDKERLLNNGD 146 + + ++L +DKE L D Sbjct: 213 NSGYLVSFGGLFGNQIYKGEQLLPIVHDKETLFRVTD 249 >gi|225016098|ref|ZP_03705331.1| hypothetical protein CLOSTMETH_00042 [Clostridium methylpentosum DSM 5476] gi|224951095|gb|EEG32304.1| hypothetical protein CLOSTMETH_00042 [Clostridium methylpentosum DSM 5476] Length = 490 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 25/70 (35%), Gaps = 6/70 (8%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDG------TRRTVRYDIDMIKCIYCGL 108 +++C C C A CP AI P + ID KCI CG Sbjct: 130 HAVIDKKKCRECGKCVAACPYNAIVDIERPCKNSCAVGAISMDENDVATIDPNKCINCGS 189 Query: 109 CQEACPVDAI 118 C CP AI Sbjct: 190 CVTGCPFGAI 199 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 13/60 (21%) Query: 61 ERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C K C CP AI+ G ID KC CG C ACP +AI Sbjct: 105 QNCRGCLAKKCIKACPFGAISTSDG-----------HAVIDKKKCRECGKCVAACPYNAI 153 >gi|15802042|ref|NP_288064.1| electron transport complex protein RnfB [Escherichia coli O157:H7 EDL933] gi|12515617|gb|AAG56617.1|AE005386_8 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933] Length = 192 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI + + + C C LC + CP I Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTHCI 162 Query: 119 VEGPNFEFATETRQEL 134 P E + +L Sbjct: 163 SLQPVAETPDSWKWDL 178 Score = 35.5 bits (80), Expect = 2.6, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C C +ACPVDAI Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132 >gi|332975511|gb|EGK12401.1| formate dehydrogenase [Desmospora sp. 8437] Length = 991 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 9/87 (10%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRT 93 FE P ++ Y ++CI C C C + +TI+ Sbjct: 127 FEPKPDPPD----NSHPFYRYEPDQCILCGRCVEACQNLQVNETLTIDWNRDRPRVVWDH 182 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVE 120 ID C+ CG C CP +A++E Sbjct: 183 DVP-IDRSSCVSCGHCVTVCPCNALME 208 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 26/83 (31%), Gaps = 9/83 (10%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIAC----KLCEAICPA-----QAITIESGPRCHDGT 90 +G R E R N E C C CE A + P+ Sbjct: 76 RGERVEAARYEAMSRVLHNHELYCTVCDNNNGNCEVHNTAQQLRLNHQEYDFEPKPDPPD 135 Query: 91 RRTVRYDIDMIKCIYCGLCQEAC 113 Y + +CI CG C EAC Sbjct: 136 NSHPFYRYEPDQCILCGRCVEAC 158 >gi|332981828|ref|YP_004463269.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Mahella australiensis 50-1 BON] gi|332699506|gb|AEE96447.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Mahella australiensis 50-1 BON] Length = 597 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 35/96 (36%), Gaps = 15/96 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 L+Y F+ + + +K L Y E C C LC +CP AIT Sbjct: 514 TLKY-FRDEYEAHIRDKKCPAGVC----QQLLEYVVMPELCRGCGLCARMCPVGAITGAK 568 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 Y ID KC CG C + C DA+ Sbjct: 569 KEP----------YVIDPEKCTKCGTCMDVCKFDAV 594 Score = 40.1 bits (92), Expect = 0.099, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 8/62 (12%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 I ++ + Y + C CGLC CPV AI ++ D Sbjct: 525 HIRDKKCPAGVCQQLLEYVVMPELCRGCGLCARMCPVGAI--------TGAKKEPYVIDP 576 Query: 139 ER 140 E+ Sbjct: 577 EK 578 >gi|329723396|gb|EGG59925.1| formate dehydrogenase, alpha subunit [Staphylococcus aureus subsp. aureus 21172] Length = 984 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 13/96 (13%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P+EK Y +CI C C C + R + Sbjct: 131 PYEKDYGP----------FYRYDPNQCILCGRCVEACQDIEVNETIRIDWDREHPRVIWD 180 Query: 97 D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 + I+ C+ CG C CP +A++E A Sbjct: 181 NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGY 216 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 17/68 (25%), Gaps = 8/68 (11%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105 R C C CE A Y D +CI Sbjct: 90 RILEKHMLYCTVCDYNNGDCEIHNTMDAWGLQHQTYEYKEKPYEKDYGPFYRYDPNQCIL 149 Query: 106 CGLCQEAC 113 CG C EAC Sbjct: 150 CGRCVEAC 157 >gi|269203939|ref|YP_003283208.1| formate dehydrogenase, alpha subunit, putative [Staphylococcus aureus subsp. aureus ED98] gi|262076229|gb|ACY12202.1| formate dehydrogenase, alpha subunit, putative [Staphylococcus aureus subsp. aureus ED98] Length = 984 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 13/96 (13%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P+EK Y +CI C C C + R + Sbjct: 131 PYEKDYGP----------FYRYDPNQCILCGRCVEACQDIEVNETIRIDWDREHPRVIWD 180 Query: 97 D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 + I+ C+ CG C CP +A++E A Sbjct: 181 NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGY 216 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 17/68 (25%), Gaps = 8/68 (11%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105 R C C CE A Y D +CI Sbjct: 90 RILEKHMLYCTVCDYNNGDCEIHNTMDAWGLQHQTYEYKEKPYEKDYGPFYRYDPNQCIL 149 Query: 106 CGLCQEAC 113 CG C EAC Sbjct: 150 CGRCVEAC 157 >gi|251780311|ref|ZP_04823231.1| iron-dependent hydrogenase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084626|gb|EES50516.1| iron-dependent hydrogenase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 494 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGT------RRTVRYDIDMIKCIYCGLCQ 110 ++C C +C+ CP AI + P R I KC+ CG C Sbjct: 135 YIDPDKCKECGMCKKACPYDAIAEDMRPCKRSCPTGALDINSDKRAMIKQEKCVNCGACM 194 Query: 111 EACPVDAI 118 ACP A+ Sbjct: 195 AACPFGAL 202 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 13/60 (21%) Query: 63 CIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C+++C AIT G ID KC CG+C++ACP DAI E Sbjct: 110 CRNCIAHKCQSVCNFGAITYVDGKAY-----------IDPDKCKECGMCKKACPYDAIAE 158 >gi|257792752|ref|YP_003183358.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Eggerthella lenta DSM 2243] gi|257476649|gb|ACV56969.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella lenta DSM 2243] Length = 393 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 6/73 (8%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 C +C++C CP AI G +C+ CG C++ CP Sbjct: 286 CVVIDGRACSSCRMCATFCPTGAIRKFDNDDGTLGVYHY------PGECVKCGSCRDVCP 339 Query: 115 VDAIVEGPNFEFA 127 +AI A Sbjct: 340 ENAIELLDEVRPA 352 Score = 40.9 bits (94), Expect = 0.057, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 11/55 (20%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +AC C C + I + G +D KCI CG C CP A+ Sbjct: 42 VACLKCADACTSGCIALVDGE-----------LRVDAAKCIGCGTCATVCPTSAL 85 >gi|218548776|ref|YP_002382567.1| electron transport complex protein RnfB [Escherichia fergusonii ATCC 35469] gi|226735420|sp|B7LQP2|RNFB_ESCF3 RecName: Full=Electron transport complex protein rnfB gi|218356317|emb|CAQ88935.1| putative iron-sulfur protein [Escherichia fergusonii ATCC 35469] gi|324113402|gb|EGC07377.1| electron transporter [Escherichia fergusonii B253] Length = 192 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI + + + C C LC + CP I Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTQCI 162 Query: 119 VEGPNFEFATETRQEL 134 P E + +L Sbjct: 163 SLQPVAETPDSWKWDL 178 Score = 35.5 bits (80), Expect = 2.4, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C C +ACPVDAI Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132 >gi|123442264|ref|YP_001006245.1| electron transport complex protein RnfC [Yersinia enterocolitica subsp. enterocolitica 8081] gi|166225386|sp|A1JM81|RNFC_YERE8 RecName: Full=Electron transport complex protein rnfC gi|122089225|emb|CAL12071.1| putative iron-sulfur binding NADH dehydrogenase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 697 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 3/103 (2%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C LC CPA + + G + ++ CI CG C CP I Sbjct: 375 QSCIRCGLCVDACPAG-LLPQQLYWFSRGEEHEKARNHNLFDCIECGACAYVCP-SNIPL 432 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + + L + ER R+E++ R + + R Sbjct: 433 VQYYRQEKAEIRTLDQEAERAAQAKARFEAKQAR-LEREKIAR 474 >gi|77164681|ref|YP_343206.1| electron transport complex protein RnfC [Nitrosococcus oceani ATCC 19707] gi|76882995|gb|ABA57676.1| Electron transport complex, RnfABCDGE type, C subunit [Nitrosococcus oceani ATCC 19707] Length = 515 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 30/104 (28%), Gaps = 4/104 (3%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 CI C C CP + + D + CI CG C CP I Sbjct: 368 PCIRCGACVEACPVG-LLPQQLYWHARAKELDKTQDYHLFDCIECGCCAYVCPSH-IPLV 425 Query: 122 PNFEFATETR--QELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + +A QE +K L + + + R Sbjct: 426 QYYRYAKSEIWTQEQEREKADLARQRHEFRQQRLAREQQQKAAR 469 >gi|57652241|ref|YP_187108.1| formate dehydrogenase, alpha subunit, putative [Staphylococcus aureus subsp. aureus COL] gi|87161471|ref|YP_494893.1| formate dehydrogenase, alpha subunit [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88196225|ref|YP_501044.1| formate dehydrogenase subunit alpha [Staphylococcus aureus subsp. aureus NCTC 8325] gi|151222422|ref|YP_001333244.1| formate dehydrogenase-like protein [Staphylococcus aureus subsp. aureus str. Newman] gi|161510504|ref|YP_001576163.1| formate dehydrogenase alpha subunit [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221140238|ref|ZP_03564731.1| formate dehydrogenase alpha subunit [Staphylococcus aureus subsp. aureus str. JKD6009] gi|262048568|ref|ZP_06021452.1| hypothetical protein SAD30_0107 [Staphylococcus aureus D30] gi|262052311|ref|ZP_06024515.1| hypothetical protein SA930_0966 [Staphylococcus aureus 930918-3] gi|282922180|ref|ZP_06329876.1| formate dehydrogenase [Staphylococcus aureus A9765] gi|284025332|ref|ZP_06379730.1| formate dehydrogenase, alpha subunit [Staphylococcus aureus subsp. aureus 132] gi|294848847|ref|ZP_06789592.1| formate dehydrogenase [Staphylococcus aureus A9754] gi|81693906|sp|Q5HDP9|FDHL_STAAC RecName: Full=Putative formate dehydrogenase SACOL2301 gi|123406992|sp|Q2FVV9|FDHL_STAA8 RecName: Full=Putative formate dehydrogenase SAOUHSC_02582 gi|123722356|sp|Q2FEI5|FDHL_STAA3 RecName: Full=Putative formate dehydrogenase SAUSA300_2258 gi|57286427|gb|AAW38521.1| formate dehydrogenase, alpha subunit, putative [Staphylococcus aureus subsp. aureus COL] gi|87127445|gb|ABD21959.1| formate dehydrogenase, alpha subunit [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87203783|gb|ABD31593.1| formate dehydrogenase, alpha subunit, putative [Staphylococcus aureus subsp. aureus NCTC 8325] gi|150375222|dbj|BAF68482.1| formate dehydrogenase homolog [Staphylococcus aureus subsp. aureus str. Newman] gi|160369313|gb|ABX30284.1| formate dehydrogenase alpha subunit [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|259159830|gb|EEW44870.1| hypothetical protein SA930_0966 [Staphylococcus aureus 930918-3] gi|259163426|gb|EEW47984.1| hypothetical protein SAD30_0107 [Staphylococcus aureus D30] gi|269941895|emb|CBI50305.1| putative bifunctional protein [Staphylococcus aureus subsp. aureus TW20] gi|282593648|gb|EFB98641.1| formate dehydrogenase [Staphylococcus aureus A9765] gi|294824226|gb|EFG40650.1| formate dehydrogenase [Staphylococcus aureus A9754] gi|302752180|gb|ADL66357.1| molybdopterin oxidoreductase [Staphylococcus aureus subsp. aureus str. JKD6008] gi|315198154|gb|EFU28485.1| formate dehydrogenase alpha subunit [Staphylococcus aureus subsp. aureus CGS01] gi|329314992|gb|AEB89405.1| Putative formate dehydrogenase [Staphylococcus aureus subsp. aureus T0131] gi|329732023|gb|EGG68378.1| formate dehydrogenase, alpha subunit [Staphylococcus aureus subsp. aureus 21189] Length = 984 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 13/96 (13%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P+EK Y +CI C C C + R + Sbjct: 131 PYEKDYGP----------FYRYDPNQCILCGRCVEACQDIEVNETIRIDWDREHPRVIWD 180 Query: 97 D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 + I+ C+ CG C CP +A++E A Sbjct: 181 NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGY 216 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 17/68 (25%), Gaps = 8/68 (11%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105 R C C CE A Y D +CI Sbjct: 90 RILEKHMLYCTVCDYNNGDCEIHNTMDAWGLQHQTYEYKEKPYEKDYGPFYRYDPNQCIL 149 Query: 106 CGLCQEAC 113 CG C EAC Sbjct: 150 CGRCVEAC 157 >gi|15925299|ref|NP_372833.1| formate dehydrogenase-like protein [Staphylococcus aureus subsp. aureus Mu50] gi|81774830|sp|Q931G2|FDHL_STAAM RecName: Full=Putative formate dehydrogenase SAV2309 gi|14248083|dbj|BAB58471.1| formate dehydrogenase homolog [Staphylococcus aureus subsp. aureus Mu50] Length = 984 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 13/96 (13%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P+EK Y +CI C C C + R + Sbjct: 131 PYEKDYGP----------FYRYDPNQCILCGRCVEACQDIEVNETIRIDWDREHPRVIWD 180 Query: 97 D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 + I+ C+ CG C CP +A++E A Sbjct: 181 NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGY 216 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 17/68 (25%), Gaps = 8/68 (11%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105 R C C CE A Y D +CI Sbjct: 90 RILEKHMLYCTVCDYNNGDCEIHNTMDAWGLQHQTYEYKEKPYEKDYGPFYRYDPNQCIL 149 Query: 106 CGLCQEAC 113 CG C EAC Sbjct: 150 CGRCVEAC 157 >gi|15927889|ref|NP_375422.1| hypothetical protein SA2102 [Staphylococcus aureus subsp. aureus N315] gi|21283958|ref|NP_647046.1| hypothetical protein MW2229 [Staphylococcus aureus subsp. aureus MW2] gi|49487092|ref|YP_044313.1| putative bifunctional protein [Staphylococcus aureus subsp. aureus MSSA476] gi|148268746|ref|YP_001247689.1| formate dehydrogenase, alpha subunit [Staphylococcus aureus subsp. aureus JH9] gi|150394813|ref|YP_001317488.1| formate dehydrogenase, alpha subunit [Staphylococcus aureus subsp. aureus JH1] gi|156980624|ref|YP_001442883.1| formate dehydrogenase-like protein [Staphylococcus aureus subsp. aureus Mu3] gi|255007086|ref|ZP_05145687.2| formate dehydrogenase-like protein [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257794652|ref|ZP_05643631.1| formate dehydrogenase [Staphylococcus aureus A9781] gi|258408744|ref|ZP_05681028.1| formate dehydrogenase [Staphylococcus aureus A9763] gi|258422342|ref|ZP_05685254.1| formate dehydrogenase [Staphylococcus aureus A9719] gi|258439732|ref|ZP_05690478.1| formate dehydrogenase [Staphylococcus aureus A9299] gi|258442712|ref|ZP_05691272.1| formate dehydrogenase [Staphylococcus aureus A8115] gi|258446589|ref|ZP_05694744.1| formate dehydrogenase [Staphylococcus aureus A6300] gi|258450293|ref|ZP_05698385.1| formate dehydrogenase [Staphylococcus aureus A6224] gi|258455334|ref|ZP_05703294.1| formate dehydrogenase [Staphylococcus aureus A5937] gi|282893750|ref|ZP_06301982.1| formate dehydrogenase [Staphylococcus aureus A8117] gi|295404990|ref|ZP_06814803.1| formate dehydrogenase [Staphylococcus aureus A8819] gi|296275008|ref|ZP_06857515.1| formate dehydrogenase-like protein [Staphylococcus aureus subsp. aureus MR1] gi|297244048|ref|ZP_06927938.1| formate dehydrogenase [Staphylococcus aureus A8796] gi|81648779|sp|Q6G711|FDHL_STAAS RecName: Full=Putative formate dehydrogenase SAS2201 gi|81704199|sp|Q7A057|FDHL_STAAW RecName: Full=Putative formate dehydrogenase MW2229 gi|81781059|sp|Q99RW4|FDHL_STAAN RecName: Full=Putative formate dehydrogenase SA2102 gi|13702109|dbj|BAB43401.1| SA2102 [Staphylococcus aureus subsp. aureus N315] gi|21205400|dbj|BAB96094.1| MW2229 [Staphylococcus aureus subsp. aureus MW2] gi|49245535|emb|CAG44012.1| putative bifunctional protein [Staphylococcus aureus subsp. aureus MSSA476] gi|147741815|gb|ABQ50113.1| formate dehydrogenase, alpha subunit [Staphylococcus aureus subsp. aureus JH9] gi|149947265|gb|ABR53201.1| formate dehydrogenase, alpha subunit [Staphylococcus aureus subsp. aureus JH1] gi|156722759|dbj|BAF79176.1| formate dehydrogenase homolog [Staphylococcus aureus subsp. aureus Mu3] gi|257788624|gb|EEV26964.1| formate dehydrogenase [Staphylococcus aureus A9781] gi|257840427|gb|EEV64887.1| formate dehydrogenase [Staphylococcus aureus A9763] gi|257841773|gb|EEV66210.1| formate dehydrogenase [Staphylococcus aureus A9719] gi|257847508|gb|EEV71510.1| formate dehydrogenase [Staphylococcus aureus A9299] gi|257851833|gb|EEV75767.1| formate dehydrogenase [Staphylococcus aureus A8115] gi|257854657|gb|EEV77605.1| formate dehydrogenase [Staphylococcus aureus A6300] gi|257856385|gb|EEV79294.1| formate dehydrogenase [Staphylococcus aureus A6224] gi|257862545|gb|EEV85313.1| formate dehydrogenase [Staphylococcus aureus A5937] gi|282763808|gb|EFC03936.1| formate dehydrogenase [Staphylococcus aureus A8117] gi|294969935|gb|EFG45953.1| formate dehydrogenase [Staphylococcus aureus A8819] gi|297178826|gb|EFH38071.1| formate dehydrogenase [Staphylococcus aureus A8796] gi|312830655|emb|CBX35497.1| formate dehydrogenase, alpha subunit [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129605|gb|EFT85596.1| hypothetical protein CGSSa03_08850 [Staphylococcus aureus subsp. aureus CGS03] Length = 984 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 13/96 (13%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P+EK Y +CI C C C + R + Sbjct: 131 PYEKDYGP----------FYRYDPNQCILCGRCVEACQDIEVNETIRIDWDREHPRVIWD 180 Query: 97 D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 + I+ C+ CG C CP +A++E A Sbjct: 181 NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGY 216 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 17/68 (25%), Gaps = 8/68 (11%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105 R C C CE A Y D +CI Sbjct: 90 RILEKHMLYCTVCDYNNGDCEIHNTMDAWGLQHQTYEYKEKPYEKDYGPFYRYDPNQCIL 149 Query: 106 CGLCQEAC 113 CG C EAC Sbjct: 150 CGRCVEAC 157 >gi|283853706|ref|ZP_06370936.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio sp. FW1012B] gi|283570916|gb|EFC18946.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio sp. FW1012B] Length = 378 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 11/82 (13%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 + + R+ ++CI C C A+CP A T+ ID CI CG Sbjct: 189 KQDQHCVRFAVDAKKCIGCGECVAVCPVGAATMADRKAA-----------IDKSSCIGCG 237 Query: 108 LCQEACPVDAIVEGPNFEFATE 129 C CP A+ + E Sbjct: 238 ECLTVCPKKAMSIDWHTEIVPF 259 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 15/43 (34%), Positives = 19/43 (44%) Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + PR + VR+ +D KCI CG C CPV A Sbjct: 181 MGCAPRAGKQDQHCVRFAVDAKKCIGCGECVAVCPVGAATMAD 223 >gi|254519684|ref|ZP_05131740.1| nitroreductase fused to ferredoxin domain-containing protein [Clostridium sp. 7_2_43FAA] gi|226913433|gb|EEH98634.1| nitroreductase fused to ferredoxin domain-containing protein [Clostridium sp. 7_2_43FAA] Length = 273 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 16/108 (14%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 +E+CI C LC C + I + G +I+ I C CG C CP Sbjct: 1 MMKVDKEKCIGCSLCINDCIVRDINLVDGKA-----------NINNITCFKCGHCIAVCP 49 Query: 115 VDAIVEGPNFEF---ATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 +A+ + ++ D++ LL N ++ I D Sbjct: 50 KNAVS-TDEYNMDDVKDYNKEAFEIDEDNLL-NFIKYRRSIRNFKNKD 95 >gi|254428110|ref|ZP_05041817.1| electron transport complex, RnfABCDGE type, C subunit subfamily, putative [Alcanivorax sp. DG881] gi|196194279|gb|EDX89238.1| electron transport complex, RnfABCDGE type, C subunit subfamily, putative [Alcanivorax sp. DG881] Length = 986 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 39/97 (40%), Gaps = 12/97 (12%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C C +CPA + + + ++ +++ CI CG C CP I Sbjct: 394 CIRCGSCAEVCPANLLPQQLYWHAKNDDLEKAQH-HNLMDCIECGACAYVCPSH-IPLVQ 451 Query: 123 NFEFA-TETRQEL----YYDKERLLNNGDRWESEIVR 154 + +A E RQ+ DK R R+E+ R Sbjct: 452 YYRYAKGEVRQQAADQVKADKAR-----QRFEARQAR 483 >gi|188587767|ref|YP_001919801.1| iron-dependent hydrogenase [Clostridium botulinum E3 str. Alaska E43] gi|188498048|gb|ACD51184.1| iron-dependent hydrogenase [Clostridium botulinum E3 str. Alaska E43] Length = 494 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGT------RRTVRYDIDMIKCIYCGLCQ 110 ++C C +C+ CP AI + P R I KC+ CG C Sbjct: 135 YIDPDKCKECGMCKKACPYDAIAEDMRPCKRSCPTGALDINSDKRAMIKQEKCVNCGACM 194 Query: 111 EACPVDAI 118 ACP A+ Sbjct: 195 AACPFGAL 202 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 13/60 (21%) Query: 63 CIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C+++C AIT G ID KC CG+C++ACP DAI E Sbjct: 110 CRNCIAHKCQSVCNFGAITYVDGKAY-----------IDPDKCKECGMCKKACPYDAIAE 158 >gi|257076625|ref|ZP_05570986.1| indolepyruvate oxidoreductase, alpha subunit [Ferroplasma acidarmanus fer1] Length = 629 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 13/73 (17%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R + Y +++C C C A+ IE G I+ C CG Sbjct: 564 RKNGEIEIYTVNQDKCGKCMNCVENFSCPALFIEKGE-----------IQINPSICDGCG 612 Query: 108 LCQE--ACPVDAI 118 +C E CP +AI Sbjct: 613 VCAEPLVCPFNAI 625 >gi|26247875|ref|NP_753915.1| electron transport complex protein RnfB [Escherichia coli CFT073] gi|227885956|ref|ZP_04003761.1| NADH dehydrogenase (ubiquinone) [Escherichia coli 83972] gi|300988845|ref|ZP_07178840.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli MS 45-1] gi|301050124|ref|ZP_07197028.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli MS 185-1] gi|81748476|sp|Q8FH96|RNFB_ECOL6 RecName: Full=Electron transport complex protein rnfB gi|26108278|gb|AAN80480.1|AE016761_55 Electron transport complex protein rnfB [Escherichia coli CFT073] gi|227837048|gb|EEJ47514.1| NADH dehydrogenase (ubiquinone) [Escherichia coli 83972] gi|300298146|gb|EFJ54531.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli MS 185-1] gi|300407383|gb|EFJ90921.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli MS 45-1] gi|307553651|gb|ADN46426.1| electron transport complex protein RnfB [Escherichia coli ABU 83972] gi|315291968|gb|EFU51320.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli MS 153-1] Length = 192 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI + + + C C LC + CP I Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTHCI 162 Query: 119 VEGPNFEFATETRQEL 134 P E + +L Sbjct: 163 SLQPVAETPDSWKWDL 178 Score = 35.5 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C C +ACPVDAI Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132 >gi|56476887|ref|YP_158476.1| electron transport complex protein rnfC (nitrogen fixation protein rnfC) [Aromatoleum aromaticum EbN1] gi|56312930|emb|CAI07575.1| Electron transport complex protein rnfC (Nitrogen fixation protein rnfC) [Aromatoleum aromaticum EbN1] Length = 508 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 33/148 (22%), Positives = 43/148 (29%), Gaps = 14/148 (9%) Query: 27 FFKAKTT-INYPFEKGSTSPRFRGEHALRRYPNG---EERCIACKLCEAICPAQAITIES 82 T + P + G L G CI C C CP + +E Sbjct: 338 LLGGPMTGMQVPSLRVPVIKGTGGILVLDGDEVGLRAPGPCIRCSTCVRACPVGLLPLEI 397 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF-----EFATETRQELYYD 137 R G + CI CG C CP I F E A R +L + Sbjct: 398 ARRIGAGDLDAAV-KFGLKDCIACGCCAYDCPSH-IPLVQYFHHAKGELAARDRHKLRSE 455 Query: 138 KERLL--NNGDRWESEIVRNIVTDSPYR 163 + L +R E E R + R Sbjct: 456 ATKTLAQARAERLERE-TREKAETAARR 482 >gi|51246476|ref|YP_066360.1| glutamate synthase, beta subunit [Desulfotalea psychrophila LSv54] gi|50877513|emb|CAG37353.1| related to glutamate synthase, beta subunit [Desulfotalea psychrophila LSv54] Length = 775 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 26/60 (43%), Gaps = 6/60 (10%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C LCE ICP AI+ E RY + KCI CG C + CP V P Sbjct: 721 CRDCHLCETICPEGAISREDLGNGEY------RYVSNDDKCIACGFCADTCPCGIWVMNP 774 >gi|86149395|ref|ZP_01067626.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Campylobacter jejuni subsp. jejuni CF93-6] gi|86152976|ref|ZP_01071181.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Campylobacter jejuni subsp. jejuni HB93-13] gi|88596081|ref|ZP_01099318.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Campylobacter jejuni subsp. jejuni 84-25] gi|205356093|ref|ZP_03222860.1| pyruvate flavodoxin oxidoreductase [Campylobacter jejuni subsp. jejuni CG8421] gi|218563077|ref|YP_002344856.1| pyruvate-flavodoxin oxidoreductase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315124909|ref|YP_004066913.1| pyruvate-flavodoxin oxidoreductase [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85840177|gb|EAQ57435.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Campylobacter jejuni subsp. jejuni CF93-6] gi|85843861|gb|EAQ61071.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Campylobacter jejuni subsp. jejuni HB93-13] gi|88190922|gb|EAQ94894.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Campylobacter jejuni subsp. jejuni 84-25] gi|112360783|emb|CAL35583.1| pyruvate-flavodoxin oxidoreductase [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|205345936|gb|EDZ32572.1| pyruvate flavodoxin oxidoreductase [Campylobacter jejuni subsp. jejuni CG8421] gi|284926683|gb|ADC29035.1| pyruvate:ferredoxin oxidoreductase [Campylobacter jejuni subsp. jejuni IA3902] gi|315018631|gb|ADT66724.1| pyruvate-flavodoxin oxidoreductase [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315927424|gb|EFV06762.1| Pyruvate/ferredoxin oxidoreductase [Campylobacter jejuni subsp. jejuni DFVF1099] gi|315930744|gb|EFV09753.1| pyruvate synthase [Campylobacter jejuni subsp. jejuni 305] Length = 1186 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 43/133 (32%), Gaps = 30/133 (22%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA------------------QAIT 79 FE G+T RG + CI C C ++CP Sbjct: 668 FEHGTTEYEKRGVGVMVPRWIE-ANCIQCNQCASVCPHAVIRPFLINDEEMANAPRGVKD 726 Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV--DAIVEGP--------NFEFATE 129 + G + + + + + C C LC CP ++V P E A Sbjct: 727 HALEAKGTKGEKLSFKIQVSPLDCTGCELCVHECPTKEKSLVMVPLQEEMDFGEQENADY 786 Query: 130 TRQELYYDKERLL 142 +E+ Y K+ +L Sbjct: 787 LFKEITY-KDDIL 798 >gi|190893106|ref|YP_001979648.1| dihydropyrimidine dehydrogenase [Rhizobium etli CIAT 652] gi|190698385|gb|ACE92470.1| dihydropyrimidine dehydrogenase protein [Rhizobium etli CIAT 652] Length = 437 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 32/76 (42%), Gaps = 6/76 (7%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI C C C + ++ +G R +++ +C+ Sbjct: 330 QYLNLNYIAKAKIDQDACIKCGRCYIACED--TSHQAITNVVNGLR---HFEVMDEECVG 384 Query: 106 CGLCQEACPV-DAIVE 120 C LC CPV + I Sbjct: 385 CNLCVSVCPVENCITM 400 >gi|150399742|ref|YP_001323509.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanococcus vannielii SB] gi|150012445|gb|ABR54897.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus vannielii SB] Length = 395 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 1/75 (1%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E+C C C CP AI + + +++ + CI CG C CP A+ Sbjct: 266 EKCTYCGPCAVKCPTGAINVVNPKGLELPSKKKTDKANEYRMCIRCGACAIKCPTSALKM 325 Query: 121 GPN-FEFATETRQEL 134 G E TR E Sbjct: 326 GKIAHEGKEYTRVEF 340 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +CI C +C CP AI +G + + + ++ +CI C C E CP I Sbjct: 156 DTNKCIYCTICSQTCPWNAIF-VAGKKPQKRQKNIKSFTVNSEECIGCEKCVEVCPGSMI 214 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 3/69 (4%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 N CI C C CP A+ + + + R + + C CG C CP Sbjct: 303 NEYRMCIRCGACAIKCPTSALKM---GKIAHEGKEYTRVEFNPSLCNECGDCINICPQKT 359 Query: 118 IVEGPNFEF 126 + Sbjct: 360 LELTGEANM 368 Score = 37.8 bits (86), Expect = 0.47, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 1/68 (1%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK-CIYCGLCQEACP 114 +P + C+ C+ C ICP + I++ I + K C+ CG+C CP Sbjct: 84 FPYSKGHCVLCEKCVDICPVEIISLPGKIDKPKKDVIIPNEPIAVTKDCVACGVCVPECP 143 Query: 115 VDAIVEGP 122 VDAI Sbjct: 144 VDAISIED 151 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 21/57 (36%), Gaps = 1/57 (1%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 C AC LC CP I +E + KC YCG C CP AI Sbjct: 229 CPACSLCVESCPVDVIKLEVEYAPSKPVTEDGLMWL-EEKCTYCGPCAVKCPTGAIN 284 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 17/78 (21%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTV-----------------RYDIDMIK 102 + CI C C CP A+T G +GT+ R+ Sbjct: 31 FKTCIQCFSCANACPTGALTERDGKLVFNGTKCDKDGACQKACPTGIKKVDGRFPYSKGH 90 Query: 103 CIYCGLCQEACPVDAIVE 120 C+ C C + CPV+ I Sbjct: 91 CVLCEKCVDICPVEIISL 108 >gi|118443355|ref|YP_877927.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium novyi NT] gi|118133811|gb|ABK60855.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium novyi NT] Length = 1168 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 45/132 (34%), Gaps = 30/132 (22%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIE----------------SGPRCHDGTRRTV 94 A+ E CI C C +CP I + G + Sbjct: 676 IAISVPEWSMENCIQCNQCSYVCPHAVIRPTLLTEEEYNNKPEGFKAVEAKGIKGEKLYY 735 Query: 95 RYDIDMIKCIYCGLCQEAC--PVDAIVEGP---------NFEFATE-TRQELYYDKERLL 142 ++ ++ C CG C E C P A+V P N+++A + +E DK Sbjct: 736 AMNVSVLDCTGCGNCAEVCPAPTKALVMKPAATQEAEQANYDYAQTLSVKENPMDK--YT 793 Query: 143 NNGDRWESEIVR 154 G ++E ++ Sbjct: 794 VKGSQFEKPLLE 805 >gi|86740730|ref|YP_481130.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Frankia sp. CcI3] gi|86567592|gb|ABD11401.1| Pyruvate:ferredoxin (flavodoxin) oxidoreductase [Frankia sp. CcI3] Length = 1195 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 23/73 (31%), Gaps = 16/73 (21%) Query: 58 NGEERCIACKLCEAICPAQAITI----------------ESGPRCHDGTRRTVRYDIDMI 101 + CI C C CP AI + P+ + + Sbjct: 705 WDADLCIDCGKCAISCPHAAIRMTLFDPARLADAPASFRHKKPKDRTLAAFRLAVQVAPD 764 Query: 102 KCIYCGLCQEACP 114 C CG+C EACP Sbjct: 765 DCTGCGICVEACP 777 Score = 38.2 bits (87), Expect = 0.41, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 22/63 (34%), Gaps = 14/63 (22%) Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDS 160 CI CG C +CP AI +D RL + + + ++ + Sbjct: 708 DLCIDCGKCAISCPHAAIRMT-------------LFDPARLADAPASFRHKKPKDRTL-A 753 Query: 161 PYR 163 +R Sbjct: 754 AFR 756 >gi|71735100|ref|YP_273634.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv. phaseolicola 1448A] gi|71555653|gb|AAZ34864.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv. phaseolicola 1448A] Length = 280 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 10/75 (13%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 RG + E CI C C CP AI + + + + + +C C Sbjct: 66 RGAAPAQVAFIREAECIGCTKCIQACPVDAIVGAAK----------LMHTVIVDECTGCD 115 Query: 108 LCQEACPVDAIVEGP 122 LC CPVD I P Sbjct: 116 LCVAPCPVDCIEMHP 130 >gi|86151937|ref|ZP_01070150.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Campylobacter jejuni subsp. jejuni 260.94] gi|85841045|gb|EAQ58294.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Campylobacter jejuni subsp. jejuni 260.94] Length = 1186 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 27/133 (20%), Positives = 43/133 (32%), Gaps = 30/133 (22%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA------------------QAIT 79 FE G+T RG + CI C C ++CP Sbjct: 668 FEHGTTEYEKRGVGVMVPRWIE-ANCIQCNQCASVCPHAVIRPFLINDEEMANAPRGVKD 726 Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV--DAIVEGP--------NFEFATE 129 + G + + + + + C C LC CP ++V P E A Sbjct: 727 HALEAKGTKGEKLSFKIQVSPLDCTGCELCVHECPTKEKSLVMVPLQEEMDFGEQENADY 786 Query: 130 TRQELYYDKERLL 142 +E+ Y K+ +L Sbjct: 787 LFKEITY-KDDIL 798 >gi|332159045|ref|YP_004424324.1| indolepyruvate ferredoxin oxidoreductase, subunit alpha [Pyrococcus sp. NA2] gi|331034508|gb|AEC52320.1| indolepyruvate ferredoxin oxidoreductase, subunit alpha [Pyrococcus sp. NA2] Length = 648 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 27/79 (34%), Gaps = 9/79 (11%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R Y EE+C CK+C AI + + +D + C CG Sbjct: 579 RAGKQWPIYQVNEEKCTGCKICINAYGCPAIYWDPEKKKA---------RVDPLMCWGCG 629 Query: 108 LCQEACPVDAIVEGPNFEF 126 C + CP A + E Sbjct: 630 GCAQVCPFGAFEKVREGEL 648 >gi|329730472|gb|EGG66862.1| formate dehydrogenase, alpha subunit [Staphylococcus aureus subsp. aureus 21193] Length = 984 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 13/96 (13%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P+EK Y +CI C C C + R + Sbjct: 131 PYEKDYGP----------FYRYDPNQCILCGRCVEACQDIEVNETIRIDWDREHPRVIWD 180 Query: 97 D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 + I+ C+ CG C CP +A++E A Sbjct: 181 NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGY 216 Score = 41.6 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 16/68 (23%), Gaps = 8/68 (11%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105 R C C CE Y D +CI Sbjct: 90 RILEKHMLYCTVCDYNNGDCEIHNTMDVWGLQHQTYEYKEKPYEKDYGPFYRYDPNQCIL 149 Query: 106 CGLCQEAC 113 CG C EAC Sbjct: 150 CGRCVEAC 157 >gi|268608043|ref|ZP_06141773.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Ruminococcus flavefaciens FD-1] Length = 1177 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 16/100 (16%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES--------------- 82 FE+G+++ RG + N ++ C C C +CP I + Sbjct: 673 FEQGASAYEKRGVAVMVPEWN-QDTCAKCNKCSFVCPHATIRPFALTEAEVAAAPENIKI 731 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 P+ T + + C+ CG+C CP ++ P Sbjct: 732 APKPIVKTEYKYTLAVSAMDCMGCGVCIGVCPTKSLKMVP 771 >gi|253734280|ref|ZP_04868445.1| formate dehydrogenase family protein [Staphylococcus aureus subsp. aureus TCH130] gi|253727696|gb|EES96425.1| formate dehydrogenase family protein [Staphylococcus aureus subsp. aureus TCH130] Length = 984 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 13/96 (13%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P+EK Y +CI C C C + R + Sbjct: 131 PYEKDYGP----------FYRYDPNQCILCGRCVEACQDIEVNETIRIDWDREHPRVIWD 180 Query: 97 D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 + I+ C+ CG C CP +A++E A Sbjct: 181 NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGY 216 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 17/68 (25%), Gaps = 8/68 (11%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105 R C C CE A Y D +CI Sbjct: 90 RILEKHMLYCTVCDYNNGDCEIHNTMDAWGLQHQTYEYKEKPYEKDYGPFYRYDPNQCIL 149 Query: 106 CGLCQEAC 113 CG C EAC Sbjct: 150 CGRCVEAC 157 >gi|288574184|ref|ZP_06392541.1| protein of unknown function DUF362 [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569925|gb|EFC91482.1| protein of unknown function DUF362 [Dethiosulfovibrio peptidovorans DSM 11002] Length = 372 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 29/65 (44%), Gaps = 11/65 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +RCI C C ICPA AIT+ R R D KCI C C E CP +AI Sbjct: 308 NRKRCILCGRCVEICPADAITM-----------RDRRLVFDYEKCIRCYCCHEMCPANAI 356 Query: 119 VEGPN 123 N Sbjct: 357 RLKQN 361 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 9/46 (19%) Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140 R + + +CI CG C E CP DAI L +D E+ Sbjct: 304 RPEQNRKRCILCGRCVEICPADAITMRDR---------RLVFDYEK 340 >gi|298528790|ref|ZP_07016194.1| protein of unknown function DUF362 [Desulfonatronospira thiodismutans ASO3-1] gi|298512442|gb|EFI36344.1| protein of unknown function DUF362 [Desulfonatronospira thiodismutans ASO3-1] Length = 374 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 11/64 (17%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 RCI+C +C CP A+++ S +D KCI C CQE CP DAI Sbjct: 311 SRCISCGICAGHCPVGAMSMSSSGPV-----------LDRDKCINCYCCQEMCPEDAIRL 359 Query: 121 GPNF 124 F Sbjct: 360 SGRF 363 >gi|192358977|ref|YP_001981503.1| Electron transport complex protein rnfB [Cellvibrio japonicus Ueda107] gi|190685142|gb|ACE82820.1| Electron transport complex protein rnfB [Cellvibrio japonicus Ueda107] Length = 223 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 10/62 (16%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C CP AI + + I +C C LC E CPVD I Sbjct: 120 DECIGCTKCIQACPMDAILGAAKQ----------MHTIIADECTGCDLCVEPCPVDCIEM 169 Query: 121 GP 122 P Sbjct: 170 IP 171 Score = 33.9 bits (76), Expect = 6.9, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 2/49 (4%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + +A ++++ H ++ I +CI C C +ACP+DAI Sbjct: 91 ADLLDVEAPSLDTEHGEHSDVKKVAF--IREDECIGCTKCIQACPMDAI 137 >gi|117919163|ref|YP_868355.1| response regulator receiver protein [Shewanella sp. ANA-3] gi|117611495|gb|ABK46949.1| response regulator receiver protein [Shewanella sp. ANA-3] Length = 410 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +C C C+ CP AI SG + ID KC+ CG C CP AI Sbjct: 18 NASKCKGCDACKQFCPTHAIHGASG----------AVHSIDEDKCLSCGQCLINCPFSAI 67 Query: 119 VEGP 122 E Sbjct: 68 EETH 71 Score = 37.4 bits (85), Expect = 0.73, Method: Composition-based stats. Identities = 9/22 (40%), Positives = 12/22 (54%) Query: 98 IDMIKCIYCGLCQEACPVDAIV 119 I+ KC C C++ CP AI Sbjct: 17 INASKCKGCDACKQFCPTHAIH 38 >gi|188495339|ref|ZP_03002609.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli 53638] gi|188490538|gb|EDU65641.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli 53638] Length = 187 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI + + + C C LC + CP I Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTHCI 162 Query: 119 VEGPNFEFATETRQEL 134 P E + +L Sbjct: 163 SLQPVAETPDSWKWDL 178 Score = 35.5 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C C +ACPVDAI Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132 >gi|116051508|ref|YP_789656.1| electron transport complex protein RnfC [Pseudomonas aeruginosa UCBPP-PA14] gi|115586729|gb|ABJ12744.1| putative NADH:ubiquinone oxidoreductase, subunit RnfC [Pseudomonas aeruginosa UCBPP-PA14] Length = 774 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 10/97 (10%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 CI C C +CP + + G ++ CI CG C CP +I Sbjct: 368 PCIRCGDCARVCPVS-LLPQQLHFFALGDEHEQLLAHNLFDCIECGACAYVCP-SSIPLV 425 Query: 122 PNFEFAT-ETRQELYYDKERLL---NNGDRWESEIVR 154 + + E R++ +++LL + +R+E R Sbjct: 426 QYYRASKAEIREQ----RQKLLKAEQSRERFEQRQAR 458 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 18/54 (33%), Gaps = 17/54 (31%) Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNI 156 CI CG C CPV + + +F GD E + N+ Sbjct: 369 CIRCGDCARVCPVSLLPQQLHF-----------------FALGDEHEQLLAHNL 405 >gi|285817972|gb|ADC38459.1| Formate dehydrogenase related protein [Staphylococcus aureus 04-02981] Length = 984 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 13/96 (13%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P+EK Y +CI C C C + R + Sbjct: 131 PYEKDYGP----------FYRYDPNQCILCGRCVEACQDIEVNETIRIDWDREHPRVIWD 180 Query: 97 D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 + I+ C+ CG C CP +A++E A Sbjct: 181 NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGY 216 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 17/68 (25%), Gaps = 8/68 (11%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105 R C C CE A Y D +CI Sbjct: 90 RILEKHMLYCTVCDYNNGDCEIHNTMDAWGLQHQTYEYKEKPYEKDYGPFYRYDPNQCIL 149 Query: 106 CGLCQEAC 113 CG C EAC Sbjct: 150 CGRCVEAC 157 >gi|261207443|ref|ZP_05922129.1| LOW QUALITY PROTEIN: pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecium TC 6] gi|260078334|gb|EEW66039.1| LOW QUALITY PROTEIN: pyruvate decarboxylase:4Fe-4S ferredoxin [Enterococcus faecium TC 6] Length = 684 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 20/93 (21%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTV 94 AL +RC C C +CP AI I R DG + Sbjct: 134 VALEVPEWISDRCTMCNECAFVCPHAAIRPFLADEEEMEEAPEGFIVREMRGADGVKY-- 191 Query: 95 RYDIDMIKCIYCGLCQEACP--VDAIVEGPNFE 125 R + + C CGLC EACP A+V P E Sbjct: 192 RIQVSVEDCTGCGLCVEACPAKEKALVMKPYEE 224 >gi|227499410|ref|ZP_03929521.1| pyruvate synthase [Anaerococcus tetradius ATCC 35098] gi|227218472|gb|EEI83715.1| pyruvate synthase [Anaerococcus tetradius ATCC 35098] Length = 1178 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 29/138 (21%), Positives = 43/138 (31%), Gaps = 22/138 (15%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHD 88 TS + AL + CI C C +CP A T + Sbjct: 671 TSQYEKRGIALFVPEWKIDNCIQCNQCSFVCPHATIRPFLLDEKAKANAPTGFETKKAIG 730 Query: 89 GTRRTVRYDID--MIKCIYCGLCQEAC--PVDAIVEGPNFEFATETRQELYYDKERLLNN 144 + I C+ CG C + C P A+ E + Y E+ Sbjct: 731 RGLEGYEFRIQVSPYDCMGCGNCVDVCPAPKKALEMKAIDEQIEKQADNWLYAHEK---V 787 Query: 145 GDRWESEIVRNIVTDSPY 162 G + + EI N V +S + Sbjct: 788 GYK-DDEIAANNVKNSQF 804 >gi|172087798|ref|YP_206209.2| formate dehydrogenase-H [Vibrio fischeri ES114] gi|171902382|gb|AAW87321.2| formate dehydrogenase-H [Vibrio fischeri ES114] Length = 1387 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 10/75 (13%) Query: 59 GEERCIACKLCEAICPAQAITI----------ESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 RCI+C C C + + + R Y + C+ CG Sbjct: 616 DANRCISCGQCVEACNEKGVHGVLSFMKNEDGTNASRPECRAGFEHGYQMGNSNCVQCGA 675 Query: 109 CQEACPVDAIVEGPN 123 C +ACPV A+V+ + Sbjct: 676 CVQACPVGALVDSRD 690 Score = 35.1 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 16/55 (29%), Gaps = 4/55 (7%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 Y G C+ C C CP A+ I C YCG+ Sbjct: 661 HGYQMGNSNCVQCGACVQACPVGALVDSRDKSQGRIEVLKPVDTI----CTYCGV 711 >gi|148270041|ref|YP_001244501.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Thermotoga petrophila RKU-1] gi|170288725|ref|YP_001738963.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Thermotoga sp. RQ2] gi|281412078|ref|YP_003346157.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Thermotoga naphthophila RKU-10] gi|6685754|sp|Q56316|PORD_THEMA RecName: Full=Pyruvate synthase subunit porD; AltName: Full=Pyruvate oxidoreductase delta chain; Short=POR; AltName: Full=Pyruvic-ferredoxin oxidoreductase subunit delta gi|1197392|emb|CAA59456.1| delta subunit of pyruvate ferredoxin oxidoreductase [Thermotoga maritima MSB8] gi|147735585|gb|ABQ46925.1| pyruvate ferredoxin oxidoreductase, delta subunit [Thermotoga petrophila RKU-1] gi|170176228|gb|ACB09280.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Thermotoga sp. RQ2] gi|281373181|gb|ADA66743.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Thermotoga naphthophila RKU-10] Length = 99 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 35/92 (38%), Gaps = 10/92 (10%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 + G+ G + R +E+CI C C CP QAI E G Sbjct: 16 DKPGTAREYKTGAWRVMRPILHKEKCIDCMFCWLYCPDQAIIQEGGIMKGF--------- 66 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 + C CGLC CP AI P EF +E Sbjct: 67 -NYDYCKGCGLCANVCPKQAIEMRPETEFLSE 97 >gi|328955718|ref|YP_004373051.1| hydrogenase large subunit domain protein [Coriobacterium glomerans PW2] gi|328456042|gb|AEB07236.1| hydrogenase large subunit domain protein [Coriobacterium glomerans PW2] Length = 517 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQ 110 ++ CI C C +ICP AI P R +ID +C+ CG C Sbjct: 152 HIDKDACINCGRCASICPYTAIAHRERPCAAACGMNAIASDEWGRAEIDYDRCVSCGQCL 211 Query: 111 EACPVDAI 118 CP AI Sbjct: 212 VNCPFGAI 219 Score = 38.2 bits (87), Expect = 0.44, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 20/66 (30%), Gaps = 13/66 (19%) Query: 57 PNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 C C C ICP A+T ID CI CG C CP Sbjct: 121 YEVTNMCQGCLAHPCREICPTGAVTFVDKKAH-----------IDKDACINCGRCASICP 169 Query: 115 VDAIVE 120 AI Sbjct: 170 YTAIAH 175 >gi|323698251|ref|ZP_08110163.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio sp. ND132] gi|323458183|gb|EGB14048.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio desulfuricans ND132] Length = 267 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 29/86 (33%), Gaps = 12/86 (13%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P G + R + + + C+ C C CP AI+ + + Sbjct: 169 PAIPGDRPYKERKKGGPVDFIAVGDSCVQCGTCAEHCPVGAISADDYTKTD--------- 219 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGP 122 KCI C C + CP +A P Sbjct: 220 ---AEKCIKCCACIKVCPENARTTKP 242 >gi|307297326|ref|ZP_07577132.1| cobyrinic acid ac-diamide synthase [Thermotogales bacterium mesG1.Ag.4.2] gi|306916586|gb|EFN46968.1| cobyrinic acid ac-diamide synthase [Thermotogales bacterium mesG1.Ag.4.2] Length = 283 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 25/81 (30%), Gaps = 11/81 (13%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 + L ++C C C +C A+++ + Sbjct: 48 EPNIHHEEGVELLLPVIDNKKCTRCGKCAEVCQFGALSV-----------FQTGVMVFES 96 Query: 102 KCIYCGLCQEACPVDAIVEGP 122 C CGLC CP AI E P Sbjct: 97 LCHGCGLCTFICPEKAITERP 117 >gi|291541232|emb|CBL14343.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Roseburia intestinalis XB6B4] Length = 288 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 22/97 (22%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++CI C +CE C AI E I+ +C YCG C ++CP DA Sbjct: 164 DKCIGCGVCEKACRQGAIKCEGNKV-----------TINRDQCNYCGRCVKSCPTDAWEG 212 Query: 121 GPNFEFAT--------ETRQEL---YYDKERLLNNGD 146 + + ++L +DKE L D Sbjct: 213 NSGYLVSFGGLFGNQIYKGEQLLPIVHDKETLFRVTD 249 >gi|260221587|emb|CBA30301.1| Uncharacterized protein yeiA [Curvibacter putative symbiont of Hydra magnipapillata] Length = 435 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 11/61 (18%) Query: 59 GEERCIACKLCEAICP---AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 ++ CI C C C QAIT E + +++ +C+ C LC CPV Sbjct: 343 NQDNCIQCGRCHIACEDTSHQAITFEKDGK--------RHFEVKEDECVGCNLCVTVCPV 394 Query: 116 D 116 Sbjct: 395 P 395 >gi|224024278|ref|ZP_03642644.1| hypothetical protein BACCOPRO_01001 [Bacteroides coprophilus DSM 18228] gi|224017500|gb|EEF75512.1| hypothetical protein BACCOPRO_01001 [Bacteroides coprophilus DSM 18228] Length = 1183 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 27/81 (33%), Gaps = 15/81 (18%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG A N E CI C C +CP A T Sbjct: 676 RGVAAFVPEWN-PETCIQCNKCAYVCPHAAIRPFVLDADEQAGANFPTLKAVGKQFDGMT 734 Query: 94 VRYDIDMIKCIYCGLCQEACP 114 R +D++ C+ CG C + CP Sbjct: 735 FRVQVDVMDCLGCGNCADVCP 755 Score = 33.9 bits (76), Expect = 8.1, Method: Composition-based stats. Identities = 8/20 (40%), Positives = 9/20 (45%) Query: 99 DMIKCIYCGLCQEACPVDAI 118 + CI C C CP AI Sbjct: 686 NPETCIQCNKCAYVCPHAAI 705 >gi|197336953|ref|YP_002157842.1| putative formate dehydrogenase [Vibrio fischeri MJ11] gi|197314205|gb|ACH63654.1| putative formate dehydrogenase [Vibrio fischeri MJ11] Length = 1387 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 10/75 (13%) Query: 59 GEERCIACKLCEAICPAQAITI----------ESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 RCI+C C C + + + R Y + C+ CG Sbjct: 616 DANRCISCGQCVEACNEKGVHGVLSFMKNEDGTNASRPECRAGFEHGYQMGNSNCVQCGA 675 Query: 109 CQEACPVDAIVEGPN 123 C +ACPV A+V+ + Sbjct: 676 CVQACPVGALVDSRD 690 Score = 35.1 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 16/55 (29%), Gaps = 4/55 (7%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 Y G C+ C C CP A+ I C YCG+ Sbjct: 661 HGYQMGNSNCVQCGACVQACPVGALVDSRDKSQGRIEVLKPVDTI----CTYCGV 711 >gi|194442230|ref|YP_002040707.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|226735430|sp|B4T595|RNFB_SALNS RecName: Full=Electron transport complex protein rnfB gi|194400893|gb|ACF61115.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 192 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI + + + C C LC + CP I Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTHCI 162 Query: 119 VEGPNFEFATETRQEL 134 P E + +L Sbjct: 163 ELRPVNETPDSWKWDL 178 Score = 35.5 bits (80), Expect = 2.6, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C C +ACPVDAI Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132 >gi|167628355|ref|YP_001678854.1| iron-sulfur cluster-binding protein [Heliobacterium modesticaldum Ice1] gi|167591095|gb|ABZ82843.1| iron-sulfur cluster-binding protein [Heliobacterium modesticaldum Ice1] Length = 374 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 17/82 (20%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 PF S R A ++CI C++C CPA A+ +E P+ Sbjct: 294 PFLARPISRSLRPLPAF-----DRDKCIGCRICLQSCPADALRMERIPQLDK-------- 340 Query: 97 DIDMIKCIYCGLCQEACPVDAI 118 KCI C CQE CP A+ Sbjct: 341 ----DKCIGCLCCQEMCPERAV 358 Score = 34.3 bits (77), Expect = 6.0, Method: Composition-based stats. Identities = 9/23 (39%), Positives = 13/23 (56%) Query: 101 IKCIYCGLCQEACPVDAIVEGPN 123 KCI C +C ++CP DA+ Sbjct: 313 DKCIGCRICLQSCPADALRMERI 335 >gi|164686657|ref|ZP_02210685.1| hypothetical protein CLOBAR_00252 [Clostridium bartlettii DSM 16795] gi|164604047|gb|EDQ97512.1| hypothetical protein CLOBAR_00252 [Clostridium bartlettii DSM 16795] Length = 598 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%) Query: 59 GEERCIACKLCEAIC-PAQAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPV 115 ++CI C+ CE +C Q + + SG T + D+ +C +CG C CP Sbjct: 147 DNDKCILCRRCETMCTEVQTVGVLSGVNRGFNTVVGTFFNADMMDTECTFCGQCVSVCPT 206 Query: 116 DAIVEGPN 123 A++E N Sbjct: 207 GALMEKDN 214 >gi|5734543|emb|CAB52772.1| polyferredoxin [Methanothermobacter thermautotrophicus] Length = 441 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 35/102 (34%), Gaps = 6/102 (5%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P++ C C C + C AI + S + V Sbjct: 60 CPYDAIRMKTILGEPVRENVPVINPRICRGCGACVSACRTGAIHLTSSGKTG------VH 113 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 +ID KC+ CG C ACP +AI G + R+ + + Sbjct: 114 SEIDEDKCVRCGYCARACPTEAIKYGEILPRSVVGRKAVVVN 155 Score = 41.2 bits (95), Expect = 0.048, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 12/62 (19%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C +C CP A+ ++ ++D CI CG CQ+ CPV A+ Sbjct: 384 DHVICQRCGVCVNHCPVDAMAMDGE------------VEVDDDTCILCGECQDICPVTAV 431 Query: 119 VE 120 Sbjct: 432 KL 433 Score = 40.9 bits (94), Expect = 0.065, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 11/79 (13%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI-----------DMIKCIYCGLCQE 111 C+ C C +CP A+ I R + I D + C CG+C Sbjct: 337 CVFCGRCRGVCPVDAVEITEEGFRASDGRIYLERRILRGPRSGSVEVDHVICQRCGVCVN 396 Query: 112 ACPVDAIVEGPNFEFATET 130 CPVDA+ E +T Sbjct: 397 HCPVDAMAMDGEVEVDDDT 415 Score = 40.5 bits (93), Expect = 0.088, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 22/61 (36%), Gaps = 3/61 (4%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 +RC C LC CP AI + R I+ C CG C AC AI Sbjct: 48 DRCFGCVLCREACPYDAIRM---KTILGEPVRENVPVINPRICRGCGACVSACRTGAIHL 104 Query: 121 G 121 Sbjct: 105 T 105 Score = 38.2 bits (87), Expect = 0.41, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 11/63 (17%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCI C LC CP I + C++CG C+ CPVDA+ Sbjct: 306 ERCIGCGLCVTECPVGVIEPVTPAPVEIK-----------DGCVFCGRCRGVCPVDAVEI 354 Query: 121 GPN 123 Sbjct: 355 TEE 357 Score = 35.5 bits (80), Expect = 2.3, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 20/63 (31%), Gaps = 8/63 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI C C +CP+ + ID C C C + CP AI Sbjct: 155 NQRDCIGCMTCTRVCPS--------RGAIKVGKINRLPYIDPSYCARCEECMDVCPSAAI 206 Query: 119 VEG 121 Sbjct: 207 KYS 209 Score = 35.1 bits (79), Expect = 3.1, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 27/72 (37%), Gaps = 12/72 (16%) Query: 54 RRYPNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 Y E+C C K C CP A+ I+ + +C C LC+E Sbjct: 9 VDYEIHHEKCRNCPDKPCLNACPVDAVHIDPDTGEVE----------IDDRCFGCVLCRE 58 Query: 112 ACPVDAIVEGPN 123 ACP DAI Sbjct: 59 ACPYDAIRMKTI 70 Score = 33.9 bits (76), Expect = 7.8, Method: Composition-based stats. Identities = 10/19 (52%), Positives = 11/19 (57%) Query: 100 MIKCIYCGLCQEACPVDAI 118 +CI CGLC CPV I Sbjct: 305 EERCIGCGLCVTECPVGVI 323 >gi|56418994|ref|YP_146312.1| formate dehydrogenase chain A [Geobacillus kaustophilus HTA426] gi|56378836|dbj|BAD74744.1| formate dehydrogenase chain A [Geobacillus kaustophilus HTA426] Length = 987 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 27/83 (32%), Gaps = 3/83 (3%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---YD 97 + + Y +CIAC C C + R V Sbjct: 129 RPKVDPSEVDMSHPFYRYDPNQCIACGQCVEACQNLQVNETLSIDWEAERPRVVWDGGVP 188 Query: 98 IDMIKCIYCGLCQEACPVDAIVE 120 I+ C+ CG C CP +A++E Sbjct: 189 INESSCVSCGQCVTVCPCNALME 211 Score = 38.5 bits (88), Expect = 0.28, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q + Y D + Sbjct: 91 RLLENHLLYCTVCDNNNGNCKLHNTAEMMQIEHQTYPYRPKVDPSEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C EAC Sbjct: 151 CIACGQCVEAC 161 >gi|327311599|ref|YP_004338496.1| 2-ketoisovalerate ferredoxin oxidoreductase subunit delta [Thermoproteus uzoniensis 768-20] gi|326948078|gb|AEA13184.1| 2-ketoisovalerate ferredoxin oxidoreductase, delta subunit [Thermoproteus uzoniensis 768-20] Length = 87 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 10/65 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +CI C +C CP I E G + ID C CG+C CP AI Sbjct: 30 DLNKCIDCGICWLYCPESVIDWEKGQKIK----------IDYTYCKGCGICAHECPTKAI 79 Query: 119 VEGPN 123 P Sbjct: 80 EMVPE 84 >gi|323703143|ref|ZP_08114797.1| hydrogenase, Fe-only [Desulfotomaculum nigrificans DSM 574] gi|323531920|gb|EGB21805.1| hydrogenase, Fe-only [Desulfotomaculum nigrificans DSM 574] Length = 593 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 24/66 (36%), Gaps = 5/66 (7%) Query: 59 GEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 +CI C C A+C A+ + I CIYCG C CP Sbjct: 144 DMNKCIKCGRCVAVCDQVQGIGALGYVRHGAEEIIDTVSGLP-IAETSCIYCGQCINVCP 202 Query: 115 VDAIVE 120 V AI E Sbjct: 203 VGAITE 208 >gi|291547662|emb|CBL20770.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Ruminococcus sp. SR1/5] Length = 287 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 11/56 (19%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C +CE C AI+ E ID KC YCG C ++CPVDA Sbjct: 166 CIHCGVCEKACRENAISFEDDKLV-----------IDTEKCNYCGRCAKSCPVDAW 210 >gi|118444967|ref|YP_878935.1| Fe-hydrogenase large subunit family protein [Clostridium novyi NT] gi|118135423|gb|ABK62467.1| Fe-hydrogenase large subunit family protein [Clostridium novyi NT] Length = 494 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 7/69 (10%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGT-------RRTVRYDIDMIKCIYCGLC 109 ++ C C +C+ +CP AI+ P + R +I+ +CI CG C Sbjct: 134 YINQDVCRECGMCKQVCPYNAISEVMRPCKKVCPTEAICISPQDRRAEINDEECISCGAC 193 Query: 110 QEACPVDAI 118 +ACP AI Sbjct: 194 MKACPFGAI 202 >gi|111024041|ref|YP_707013.1| ferredoxin--NADP(+) reductase [Rhodococcus jostii RHA1] gi|110823571|gb|ABG98855.1| probable ferredoxin--NADP(+) reductase [Rhodococcus jostii RHA1] Length = 467 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 23/70 (32%), Gaps = 5/70 (7%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C +CP I G G ID CI C C EACP AI Sbjct: 8 HCCKDASCVRVCPQNCIHPAPGEA---GFESAETLFIDPRSCIDCTACVEACPASAIK-- 62 Query: 122 PNFEFATETR 131 P + R Sbjct: 63 PEWTLTITER 72 >gi|82751902|ref|YP_417643.1| formate dehydrogenase alpha subunit [Staphylococcus aureus RF122] gi|123727500|sp|Q2YYT1|FDHL_STAAB RecName: Full=Putative formate dehydrogenase SAB2186c gi|82657433|emb|CAI81875.1| formate dehydrogenase alpha subunit [Staphylococcus aureus RF122] Length = 984 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 13/96 (13%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P+EK Y +CI C C C + R + Sbjct: 131 PYEKDYGP----------FYRYDPNQCILCGRCVEACQDIEVNETIRIDWDREHPRVIWD 180 Query: 97 D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 + I+ C+ CG C CP +A++E A Sbjct: 181 NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGY 216 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 17/68 (25%), Gaps = 8/68 (11%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105 R C C CE A Y D +CI Sbjct: 90 RILEKHMLYCTVCDYNNGDCEIHNTMDAWGLQHQTYEYKEKPYEKDYGPFYRYDPNQCIL 149 Query: 106 CGLCQEAC 113 CG C EAC Sbjct: 150 CGRCVEAC 157 >gi|70725749|ref|YP_252663.1| hypothetical protein SH0748 [Staphylococcus haemolyticus JCSC1435] gi|123776168|sp|Q4L8G8|FDHL_STAHJ RecName: Full=Putative formate dehydrogenase SH0748 gi|68446473|dbj|BAE04057.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 984 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 32/96 (33%), Gaps = 13/96 (13%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P+EK Y ++CI C C C + + R + Sbjct: 131 PYEKDYGP----------FYRYDPDQCILCGRCVEACQDIEVNETISIDWNREHPRVIWD 180 Query: 97 D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 + I+ C+ CG C CP +A++E A Sbjct: 181 NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGY 216 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 19/68 (27%), Gaps = 8/68 (11%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESG----PRCHDGTRRTVRYDIDMIKCIY 105 R C C CE A +E Y D +CI Sbjct: 90 RILEKHMLYCTVCDYNNGDCEIHNAMDAWGLEEQSYEYKTKPYEKDYGPFYRYDPDQCIL 149 Query: 106 CGLCQEAC 113 CG C EAC Sbjct: 150 CGRCVEAC 157 >gi|332098105|gb|EGJ03078.1| electron transport complex, RnfABCDGE type, B subunit [Shigella dysenteriae 155-74] Length = 192 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI + + + C C LC + CP I Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTHCI 162 Query: 119 VEGPNFEFATETRQEL 134 P E + +L Sbjct: 163 SLQPVAETPDSWKWDL 178 Score = 35.5 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C C +ACPVDAI Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132 >gi|291549481|emb|CBL25743.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [Ruminococcus torques L2-14] Length = 1190 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 29/94 (30%), Gaps = 15/94 (15%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQ-----AITIESGPRCHDGTR---------RT 93 RG N +CI C C +CP A+T E + +G + Sbjct: 680 RGIAVDIPVWN-PNQCIQCNRCAYVCPHAVIRPVALTEEEVAQAPEGLKTLDMIGMPGMK 738 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 + C CG C CP E E A Sbjct: 739 FTMTVSAYDCTGCGSCVNVCPGKKNKETGEVEKA 772 >gi|256783977|ref|ZP_05522408.1| respiratory chain oxidoreductase [Streptomyces lividans TK24] Length = 279 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 4/75 (5%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQE 111 Y +CI C C C Q + G + + + C+YCG C E Sbjct: 138 YVRDYGKCILCYKCVDACGDQWQNSFAISVAGRGFDARISVEQDGPLTDSACVYCGNCIE 197 Query: 112 ACPVDAIVEGPNFEF 126 CP A+ F+ Sbjct: 198 VCPTGALSFKSEFDM 212 >gi|294889633|ref|XP_002772895.1| pyruvate:ferredoxin oxidoreductase/NADPH-cytochrome P450, putative [Perkinsus marinus ATCC 50983] gi|239877475|gb|EER04711.1| pyruvate:ferredoxin oxidoreductase/NADPH-cytochrome P450, putative [Perkinsus marinus ATCC 50983] Length = 1831 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 30/93 (32%), Gaps = 17/93 (18%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAI---------------TIESGPRCHDGTRRTVR 95 AL ++C C +C CP I T ++ + Sbjct: 738 VALMIPIVDMDKCTHCNICAMSCPHACIRPFLLSQAEDDAKPSTFDTRKAKGGAEVAGLH 797 Query: 96 YDID--MIKCIYCGLCQEACPVDAIVEGPNFEF 126 Y I + C C +C ACP DA+ +F Sbjct: 798 YRIQVSPLDCTGCEVCVNACPDDALRMEHLSDF 830 >gi|222149525|ref|YP_002550482.1| dihydropyrimidine dehydrogenase [Agrobacterium vitis S4] gi|221736507|gb|ACM37470.1| dihydroorotate dihydrogenase protein [Agrobacterium vitis S4] Length = 437 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 33/76 (43%), Gaps = 6/76 (7%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI C C C + ++ DG R+ +++ +C+ Sbjct: 330 QYLNLNYIAKAQIDQDACIKCGRCHIACED--TSHQAITSIVDGARK---FEVMEDECVG 384 Query: 106 CGLCQEACPV-DAIVE 120 C LC CPV + I Sbjct: 385 CNLCVNVCPVENCITM 400 >gi|107103021|ref|ZP_01366939.1| hypothetical protein PaerPA_01004090 [Pseudomonas aeruginosa PACS2] Length = 774 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 10/97 (10%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 CI C C +CP + + G ++ CI CG C CP +I Sbjct: 368 PCIRCGDCAQVCPVS-LLPQQLHFFALGDEHEQLLAHNLFDCIECGACAYVCP-SSIPLV 425 Query: 122 PNFEFAT-ETRQELYYDKERLL---NNGDRWESEIVR 154 + + E R++ +++LL + +R+E R Sbjct: 426 QYYRASKAEIREQ----RQKLLKAEQSRERFEQRQAR 458 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 17/54 (31%) Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNI 156 CI CG C + CPV + + +F GD E + N+ Sbjct: 369 CIRCGDCAQVCPVSLLPQQLHF-----------------FALGDEHEQLLAHNL 405 >gi|16764806|ref|NP_460421.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161614123|ref|YP_001588088.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167994289|ref|ZP_02575381.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168240974|ref|ZP_02665906.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|168264619|ref|ZP_02686592.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|194448094|ref|YP_002045496.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197265920|ref|ZP_03165994.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|198244365|ref|YP_002215677.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|24638186|sp|Q8ZPM1|RNFB_SALTY RecName: Full=Electron transport complex protein rnfB gi|189043388|sp|A9N024|RNFB_SALPB RecName: Full=Electron transport complex protein rnfB gi|226735426|sp|B5FIE6|RNFB_SALDC RecName: Full=Electron transport complex protein rnfB gi|226735429|sp|B4THD5|RNFB_SALHS RecName: Full=Electron transport complex protein rnfB gi|16419979|gb|AAL20380.1| putative alternative beta subunit of Na+-transporting NADH:ubiquinone oxidoreductase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|161363487|gb|ABX67255.1| hypothetical protein SPAB_01862 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194406398|gb|ACF66617.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197244175|gb|EDY26795.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197938881|gb|ACH76214.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205327845|gb|EDZ14609.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205339698|gb|EDZ26462.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|205346940|gb|EDZ33571.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|261246662|emb|CBG24472.1| Electron transport complex protein rnfB [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993348|gb|ACY88233.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157991|emb|CBW17486.1| Electron transport complex protein rnfB [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912441|dbj|BAJ36415.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224077|gb|EFX49140.1| Electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323129728|gb|ADX17158.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326623423|gb|EGE29768.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|332988343|gb|AEF07326.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 192 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI + + + C C LC + CP I Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTHCI 162 Query: 119 VEGPNFEFATETRQEL 134 P E + +L Sbjct: 163 ELRPVNETPDSWKWDL 178 Score = 35.5 bits (80), Expect = 2.6, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C C +ACPVDAI Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132 >gi|306817518|ref|ZP_07451262.1| pyridine nucleotide-disulfide oxidoreductase [Mobiluncus mulieris ATCC 35239] gi|307699830|ref|ZP_07636881.1| pyridine nucleotide-disulfide oxidoreductase [Mobiluncus mulieris FB024-16] gi|304649742|gb|EFM47023.1| pyridine nucleotide-disulfide oxidoreductase [Mobiluncus mulieris ATCC 35239] gi|307614868|gb|EFN94086.1| pyridine nucleotide-disulfide oxidoreductase [Mobiluncus mulieris FB024-16] Length = 550 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 21/59 (35%), Gaps = 10/59 (16%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C +CP AI + +Y C CG+C E CP AI Sbjct: 497 NCFGCDNCFGVCPDNAIKKI----------KPTQYVFKYDYCKGCGICAEECPCGAIDM 545 >gi|293401032|ref|ZP_06645177.1| Fe-hydrogenase large subunit family protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306058|gb|EFE47302.1| Fe-hydrogenase large subunit family protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 504 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 28/66 (42%), Gaps = 6/66 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQEA 112 +++CI C C +CP AI P R +ID KC+ CG+C Sbjct: 147 DQDKCIKCGRCMDVCPYGAINKLERPCARSCGMDAIKSDEFGRAEIDHEKCVSCGMCLVN 206 Query: 113 CPVDAI 118 CP AI Sbjct: 207 CPFGAI 212 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 13/61 (21%) Query: 61 ERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C C+ +CP AI+I +G ID KCI CG C + CP AI Sbjct: 118 DTCQGCLAHPCKEVCPKDAISIINGKSV-----------IDQDKCIKCGRCMDVCPYGAI 166 Query: 119 V 119 Sbjct: 167 N 167 >gi|283471529|emb|CAQ50740.1| molybdopterin oxidoreductase family protein [Staphylococcus aureus subsp. aureus ST398] Length = 984 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 13/96 (13%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P+EK Y +CI C C C + R + Sbjct: 131 PYEKDYGP----------FYRYDPNQCILCGRCVEACQDIEVNETIRIDWDREHPRVIWD 180 Query: 97 D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 + I+ C+ CG C CP +A++E A Sbjct: 181 NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGY 216 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 17/68 (25%), Gaps = 8/68 (11%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105 R C C CE A Y D +CI Sbjct: 90 RILEKHMLYCTVCDYNNGDCEIHNTMDAWGLQHQTYEYKEKPYEKDYGPFYRYDPNQCIL 149 Query: 106 CGLCQEAC 113 CG C EAC Sbjct: 150 CGRCVEAC 157 >gi|282917657|ref|ZP_06325408.1| formate dehydrogenase [Staphylococcus aureus subsp. aureus D139] gi|283767400|ref|ZP_06340315.1| formate dehydrogenase [Staphylococcus aureus subsp. aureus H19] gi|282318412|gb|EFB48771.1| formate dehydrogenase [Staphylococcus aureus subsp. aureus D139] gi|283461279|gb|EFC08363.1| formate dehydrogenase [Staphylococcus aureus subsp. aureus H19] Length = 984 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 13/96 (13%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P+EK Y +CI C C C + R + Sbjct: 131 PYEKDYGP----------FYRYDPNQCILCGRCVEACQDIEVNETIRIDWDREHPRVIWD 180 Query: 97 D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 + I+ C+ CG C CP +A++E A Sbjct: 181 NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGY 216 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 17/68 (25%), Gaps = 8/68 (11%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105 R C C CE A Y D +CI Sbjct: 90 RILEKHMLYCTVCDYNNGDCEIHNTMDAWGLQHQTYEYKEKPYEKDYGPFYRYDPNQCIL 149 Query: 106 CGLCQEAC 113 CG C EAC Sbjct: 150 CGRCVEAC 157 >gi|261403708|ref|YP_003247932.1| archaeoflavoprotein, MJ0208 family [Methanocaldococcus vulcanius M7] gi|261370701|gb|ACX73450.1| archaeoflavoprotein, MJ0208 family [Methanocaldococcus vulcanius M7] Length = 235 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 11/69 (15%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 Y ++C C C CP AI R +I + KC+ CG C+ CP Sbjct: 142 PYSIDRKKCNCCLKCVEACPNGAI-----------IVRKRFPEIVLSKCLGCGRCKRVCP 190 Query: 115 VDAIVEGPN 123 AI+EG Sbjct: 191 NGAIIEGKE 199 Score = 34.3 bits (77), Expect = 5.4, Method: Composition-based stats. Identities = 14/29 (48%), Positives = 15/29 (51%) Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 Y ID KC C C EACP AI+ F Sbjct: 143 YSIDRKKCNCCLKCVEACPNGAIIVRKRF 171 >gi|258423682|ref|ZP_05686569.1| formate dehydrogenase alpha subunit [Staphylococcus aureus A9635] gi|257846074|gb|EEV70101.1| formate dehydrogenase alpha subunit [Staphylococcus aureus A9635] Length = 984 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 13/96 (13%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P+EK Y +CI C C C + R + Sbjct: 131 PYEKDYGP----------FYRYDPNQCILCGRCVEACQDIEVNETIRIDWDREHPRVIWD 180 Query: 97 D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 + I+ C+ CG C CP +A++E A Sbjct: 181 NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGY 216 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 17/68 (25%), Gaps = 8/68 (11%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105 R C C CE A Y D +CI Sbjct: 90 RILEKHMLYCTVCDYNNGDCEIHNTMDAWGLQHQTYEYKEKPYEKDYGPFYRYDPNQCIL 149 Query: 106 CGLCQEAC 113 CG C EAC Sbjct: 150 CGRCVEAC 157 >gi|255283527|ref|ZP_05348082.1| iron-sulfur cluster-binding protein [Bryantella formatexigens DSM 14469] gi|255265984|gb|EET59189.1| iron-sulfur cluster-binding protein [Bryantella formatexigens DSM 14469] Length = 372 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 11/60 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI C C IC A + ID KC+ CG C CP DA+ Sbjct: 193 NTDACIGCGACSRICAHGAAVVTDKKAS-----------IDHNKCVGCGRCIGVCPKDAV 241 >gi|225076878|ref|ZP_03720077.1| hypothetical protein NEIFLAOT_01929 [Neisseria flavescens NRL30031/H210] gi|224951764|gb|EEG32973.1| hypothetical protein NEIFLAOT_01929 [Neisseria flavescens NRL30031/H210] Length = 283 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI S + + + +C CGLC CPVD I Sbjct: 77 DEAVCIGCTACIRACPVDAIMGASK----------LMHTVISDECTGCGLCVTPCPVDCI 126 Query: 119 VEGP 122 P Sbjct: 127 DMVP 130 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 13/22 (59%), Positives = 14/22 (63%) Query: 98 IDMIKCIYCGLCQEACPVDAIV 119 ID CI C C ACPVDAI+ Sbjct: 76 IDEAVCIGCTACIRACPVDAIM 97 >gi|239627945|ref|ZP_04670976.1| NADH dehydrogenase [Clostridiales bacterium 1_7_47_FAA] gi|239518091|gb|EEQ57957.1| NADH dehydrogenase [Clostridiales bacterium 1_7_47FAA] Length = 596 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 35/94 (37%), Gaps = 14/94 (14%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 +FF+ + + + AL Y ++C C LC CPA AI Sbjct: 515 HFFRDEYEAHIKERRCPAGVC----KALLSYVIDRDKCRGCTLCARTCPAGAIVGS---- 566 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + ID+ KCI CG C E C AI Sbjct: 567 ------VKNPHVIDLNKCIKCGACMEKCKFGAIY 594 >gi|154495354|ref|ZP_02034359.1| hypothetical protein PARMER_04411 [Parabacteroides merdae ATCC 43184] gi|154085278|gb|EDN84323.1| hypothetical protein PARMER_04411 [Parabacteroides merdae ATCC 43184] Length = 561 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 28/81 (34%), Positives = 35/81 (43%), Gaps = 13/81 (16%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 EK S + R L +Y E+C C LC +CP AIT + + V + I Sbjct: 492 EKRCPSHQCR---ELTQYFINPEKCKGCTLCARMCPVNAITGD----------KKVPHVI 538 Query: 99 DMIKCIYCGLCQEACPVDAIV 119 D CI CG C E C AI Sbjct: 539 DPQTCIRCGSCIERCKFGAIY 559 >gi|119897731|ref|YP_932944.1| electron transport complex protein RnfB [Azoarcus sp. BH72] gi|166225080|sp|A1K5F2|RNFB_AZOSB RecName: Full=Electron transport complex protein rnfB; AltName: Full=Nitrogen fixation protein rnfB gi|119670144|emb|CAL94057.1| probable electron transport complex protein RnfB [Azoarcus sp. BH72] Length = 183 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 28/93 (30%), Gaps = 10/93 (10%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E S E E CI C LC CP AI + + + Sbjct: 89 EFKPLSAEHGEEKPKAVAYIDENVCIGCTLCLQACPVDAIVGAAKQ----------MHTV 138 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 C C LC CPVD I P E R Sbjct: 139 VDPLCTGCELCVAPCPVDCIYMEPVRETVQTWR 171 >gi|78223461|ref|YP_385208.1| electron transfer flavoprotein subunit alpha [Geobacter metallireducens GS-15] gi|78194716|gb|ABB32483.1| Electron transfer flavoprotein, alpha subunit [Geobacter metallireducens GS-15] Length = 442 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 29/116 (25%), Positives = 40/116 (34%), Gaps = 25/116 (21%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACK-LCEAICPAQAITIESGPRCHDGTRRTVRY 96 K RG L CIAC C+++CP + + Sbjct: 3 EAKRPMKKP-RGVAQLI-----AGACIACGARCQSVCPVNCVDMNDAGEPV--------- 47 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEI 152 ++ KCI C C + CP A+ F E R+ L + L GD E EI Sbjct: 48 -VNSAKCIGCQKCVKICPATALEMY----FTPEERKIL----DELAAQGDPVEEEI 94 >gi|323440010|gb|EGA97725.1| formate dehydrogenase alpha subunit [Staphylococcus aureus O11] Length = 984 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 13/96 (13%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P+EK Y +CI C C C + R + Sbjct: 131 PYEKDYGP----------FYRYDPNQCILCGRCVEACQDIEVNETIRIDWDREHPRVIWD 180 Query: 97 D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 + I+ C+ CG C CP +A++E A Sbjct: 181 NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGY 216 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 17/68 (25%), Gaps = 8/68 (11%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105 R C C CE A Y D +CI Sbjct: 90 RILEKHMLYCTVCDYNNGDCEIHNTMDAWGLQHQTYEYKEKPYEKDYGPFYRYDPNQCIL 149 Query: 106 CGLCQEAC 113 CG C EAC Sbjct: 150 CGRCVEAC 157 >gi|317489034|ref|ZP_07947561.1| 4Fe-4S binding domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|316911901|gb|EFV33483.1| 4Fe-4S binding domain-containing protein [Eggerthella sp. 1_3_56FAA] Length = 394 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 6/73 (8%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 C +C++C CP AI G +C+ CG C++ CP Sbjct: 287 CVVIDGRACSSCRMCATFCPTGAIRKFDNDDGTLGVYHY------PGECVKCGSCRDVCP 340 Query: 115 VDAIVEGPNFEFA 127 +AI A Sbjct: 341 ENAIELLDEVRPA 353 Score = 40.9 bits (94), Expect = 0.062, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 11/55 (20%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +AC C C + I + G +D KCI CG C CP A+ Sbjct: 43 VACLKCADACTSGCIALVDGE-----------LRVDAAKCIGCGTCATVCPTSAL 86 >gi|291514594|emb|CBK63804.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [Alistipes shahii WAL 8301] Length = 1157 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 29/92 (31%), Gaps = 15/92 (16%) Query: 62 RCIACKLCEAICPAQ-------------AITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 CI C C +CP A +E + R I + C C Sbjct: 674 NCIQCNQCAYVCPHAVIRPFLATEEEAAASGVEWKQGLGETKEYKFRIQISPMDCTGCSN 733 Query: 109 CQEACPV--DAIVEGPNFEFATETRQELYYDK 138 C + CP A+V P E + + Y K Sbjct: 734 CVDVCPAKDKALVMRPLEEQMPQQKNWDYITK 765 >gi|187932652|ref|YP_001884615.1| iron-dependent hydrogenase [Clostridium botulinum B str. Eklund 17B] gi|187720805|gb|ACD22026.1| iron-dependent hydrogenase [Clostridium botulinum B str. Eklund 17B] Length = 494 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGT------RRTVRYDIDMIKCIYCGLCQ 110 ++C C +C+ CP AI + P R I KC+ CG C Sbjct: 135 YIDPDKCKECGMCKKACPYDAIAEDMRPCKRSCPTGALDINSDKRAMIKQEKCVNCGACM 194 Query: 111 EACPVDAI 118 ACP A+ Sbjct: 195 AACPFGAL 202 Score = 39.7 bits (91), Expect = 0.12, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 28/60 (46%), Gaps = 13/60 (21%) Query: 63 CIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C+++C AIT G ID KC CG+C++ACP DAI E Sbjct: 110 CRNCIAHKCQSVCNFGAITYVEGKAY-----------IDPDKCKECGMCKKACPYDAIAE 158 >gi|28211156|ref|NP_782100.1| putative ferredoxin-type protein napH [Clostridium tetani E88] gi|28203596|gb|AAO36037.1| conserved protein, putative ferredoxin-type protein napH [Clostridium tetani E88] Length = 304 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 42/129 (32%), Gaps = 26/129 (20%) Query: 2 RIFRCNVSFLF-LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTS----PRFRGEHALRRY 56 + R ++ LF LK + + L F PF K F + +L Y Sbjct: 182 KGIRSSLGALFALKSIILVMVILLSIMF------YRPFCKWICPLGAFYSFFNKISLYSY 235 Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 ++ C+ C C +C +S CI CG C + CP Sbjct: 236 DFNKDNCVNCGKCRRVCKMDVDITKSTTHNE---------------CIRCGECIKVCPTK 280 Query: 117 AIVEGPNFE 125 AI +E Sbjct: 281 AISTFWGYE 289 >gi|332703321|ref|ZP_08423409.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfovibrio africanus str. Walvis Bay] gi|332553470|gb|EGJ50514.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfovibrio africanus str. Walvis Bay] Length = 1232 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 28/90 (31%), Gaps = 18/90 (20%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR----------------RTV 94 A+ E CI C C +CP AI Sbjct: 677 VAINVPQWVPENCIQCNQCAFVCPHSAILPVLAKEEELVGAPANFTALEAKGKELKGYKF 736 Query: 95 RYDIDMIKCIYCGLCQEACP--VDAIVEGP 122 R I+ + C+ CG C + CP A+V P Sbjct: 737 RIQINTLDCMGCGNCADICPPKEKALVMQP 766 >gi|325831143|ref|ZP_08164467.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1] gi|325487064|gb|EGC89510.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1] Length = 394 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 6/73 (8%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 C +C++C CP AI G +C+ CG C++ CP Sbjct: 287 CVVIDGRACSSCRMCATFCPTGAIRKFDNDDGTLGVYHY------PGECVKCGSCRDVCP 340 Query: 115 VDAIVEGPNFEFA 127 +AI A Sbjct: 341 ENAIELLDEVRPA 353 Score = 40.9 bits (94), Expect = 0.061, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 21/55 (38%), Gaps = 11/55 (20%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +AC C C + I + G +D KCI CG C CP A+ Sbjct: 43 VACLKCADACTSGCIALVDGE-----------LRVDAAKCIGCGTCATVCPTSAL 86 >gi|319400679|gb|EFV88904.1| formate dehydrogenase, alpha subunit [Staphylococcus epidermidis FRI909] Length = 983 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 29/89 (32%), Gaps = 13/89 (14%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P+EK Y +CI C C C + R + Sbjct: 131 PYEKDYGP----------FYRYDPNQCILCGRCVEACQDVEVNETIRIDWERDHPRVIWD 180 Query: 97 D---IDMIKCIYCGLCQEACPVDAIVEGP 122 + I+ C+ CG C CP +A++E Sbjct: 181 NDVPINESSCVSCGQCATVCPCNAMMEVN 209 Score = 42.4 bits (98), Expect = 0.024, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 17/68 (25%), Gaps = 8/68 (11%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105 R C C CE R Y D +CI Sbjct: 90 RILEKHMLYCTVCDYNNGDCEIHNTMDKWGIQHQTYEYKRKPYEKDYGPFYRYDPNQCIL 149 Query: 106 CGLCQEAC 113 CG C EAC Sbjct: 150 CGRCVEAC 157 >gi|227876559|ref|ZP_03994670.1| glutamate synthase (NADPH) small subunit [Mobiluncus mulieris ATCC 35243] gi|269977760|ref|ZP_06184720.1| glutamate synthase [Mobiluncus mulieris 28-1] gi|227842873|gb|EEJ53071.1| glutamate synthase (NADPH) small subunit [Mobiluncus mulieris ATCC 35243] gi|269934064|gb|EEZ90638.1| glutamate synthase [Mobiluncus mulieris 28-1] Length = 550 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 21/59 (35%), Gaps = 10/59 (16%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C +CP AI + +Y C CG+C E CP AI Sbjct: 497 NCFGCDNCFGVCPDNAIKKI----------KPTQYVFKYDYCKGCGICAEECPCGAIDM 545 >gi|212636385|ref|YP_002312910.1| iron-sulfur binding 4Fe-4S ferredoxin [Shewanella piezotolerans WP3] gi|212557869|gb|ACJ30323.1| 4Fe-4S ferredoxin, iron-sulfur binding:FAD linked oxidase [Shewanella piezotolerans WP3] Length = 960 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 34/91 (37%), Gaps = 9/91 (9%) Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 + I + + D + KCI CG C++ CP A+ P AT R Sbjct: 532 LLNPGVILNDDSQIHVKNIKPCPVVDDLVDKCIECGFCEKTCPTSALNMSPRQRIATL-R 590 Query: 132 QELYYDKERLLNNGDRWESEIVRNIVTDSPY 162 + ERL +GD+ + + + Y Sbjct: 591 E-----IERLEQSGDK---QAASEMRAAAKY 613 Score = 37.4 bits (85), Expect = 0.74, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 26/72 (36%), Gaps = 18/72 (25%) Query: 61 ERCIACKLCEAICPAQAITIES-----------------GPRCHDGTRRTVRYDIDMIKC 103 ++CI C CE CP A+ + + R +YD+ C Sbjct: 561 DKCIECGFCEKTCPTSALNMSPRQRIATLREIERLEQSGDKQAASEMRAAAKYDVV-DTC 619 Query: 104 IYCGLCQEACPV 115 C LC ACPV Sbjct: 620 AACQLCTIACPV 631 >gi|126727358|ref|ZP_01743193.1| iron-sulfur cluster-binding protein [Rhodobacterales bacterium HTCC2150] gi|126703353|gb|EBA02451.1| iron-sulfur cluster-binding protein [Rhodobacterales bacterium HTCC2150] Length = 650 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 9/82 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E C C C ++CP+ A+ + C+ CGLC CP +AI Sbjct: 498 DKESCTLCLSCVSLCPSGALADNPD---------MPQLRFQEDACLQCGLCSNICPENAI 548 Query: 119 VEGPNFEFATETRQELYYDKER 140 P + + +E Sbjct: 549 TLAPQMDLTDTVLSQRVVHEEE 570 Score = 40.1 bits (92), Expect = 0.12, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 30/97 (30%), Gaps = 17/97 (17%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 C C +CP AI ID + C CG C CP AI Sbjct: 278 CSNCLNVCPTGAIVSAGE-----------HVAIDPMICAGCGACSAVCPSGAISYDAPPV 326 Query: 126 FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPY 162 R L L + + + R +V D+ + Sbjct: 327 ETVFQRLSL------LASTYRKAGGQDARLLVHDADH 357 >gi|77918675|ref|YP_356490.1| ferredoxin [Pelobacter carbinolicus DSM 2380] gi|77544758|gb|ABA88320.1| ferredoxin [Pelobacter carbinolicus DSM 2380] Length = 417 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 28/82 (34%), Gaps = 12/82 (14%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 F + +L + C+ C C+ CP +A + + Sbjct: 335 WYAWFLEKISLTGVRIDSQICVDCGACDRACPVEAAKDRLAGKK------------WPAE 382 Query: 103 CIYCGLCQEACPVDAIVEGPNF 124 C C C CPVDAI GP + Sbjct: 383 CFSCARCLRVCPVDAIDYGPRW 404 >gi|1770208|emb|CAA70873.1| pyruvate-ferredoxin oxidoreductase [Desulfovibrio africanus] Length = 1232 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 28/90 (31%), Gaps = 18/90 (20%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR----------------RTV 94 A+ E CI C C +CP AI Sbjct: 677 VAINVPQWVPENCIQCNQCAFVCPHSAILPVLAKEEELVGAPANFTALEAKGKELKGYKF 736 Query: 95 RYDIDMIKCIYCGLCQEACP--VDAIVEGP 122 R I+ + C+ CG C + CP A+V P Sbjct: 737 RIQINTLDCMGCGNCADICPPKEKALVMQP 766 >gi|4558091|pdb|1B0P|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase From Desulfovibrio Africanus gi|4558092|pdb|1B0P|B Chain B, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase From Desulfovibrio Africanus gi|4558221|pdb|2PDA|A Chain A, Crystal Structure Of The Complex Between Pyruvate- Ferredoxin Oxidoreductase From Desulfovibrio Africanus And Pyruvate. gi|4558222|pdb|2PDA|B Chain B, Crystal Structure Of The Complex Between Pyruvate- Ferredoxin Oxidoreductase From Desulfovibrio Africanus And Pyruvate. gi|18158649|pdb|1KEK|A Chain A, Crystal Structure Of The Free Radical Intermediate Of Pyruvate:ferredoxin Oxidoreductase gi|18158650|pdb|1KEK|B Chain B, Crystal Structure Of The Free Radical Intermediate Of Pyruvate:ferredoxin Oxidoreductase gi|90108955|pdb|2C3M|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase From Desulfovibrio Africanus gi|90108956|pdb|2C3M|B Chain B, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase From Desulfovibrio Africanus gi|90108957|pdb|2C3O|A Chain A, Crystal Structure Of The Free Radical Intermediate Of Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio Africanus gi|90108958|pdb|2C3O|B Chain B, Crystal Structure Of The Free Radical Intermediate Of Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio Africanus gi|90108959|pdb|2C3P|A Chain A, Crystal Structure Of The Free Radical Intermediate Of Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio Africanus gi|90108960|pdb|2C3P|B Chain B, Crystal Structure Of The Free Radical Intermediate Of Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio Africanus gi|90108961|pdb|2C3U|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase From Desulfovibrio Africanus, Oxygen Inhibited Form gi|90108962|pdb|2C3U|B Chain B, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase From Desulfovibrio Africanus, Oxygen Inhibited Form gi|90108963|pdb|2C3Y|A Chain A, Crystal Structure Of The Radical Form Of Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio Africanus gi|90108964|pdb|2C3Y|B Chain B, Crystal Structure Of The Radical Form Of Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio Africanus gi|122919639|pdb|2C42|A Chain A, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase From Desulfovibrio Africanus gi|122919640|pdb|2C42|B Chain B, Crystal Structure Of Pyruvate-Ferredoxin Oxidoreductase From Desulfovibrio Africanus gi|188595859|pdb|2UZA|A Chain A, Crystal Structure Of The Free Radical Intermediate Of Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio Africanus gi|188595860|pdb|2UZA|B Chain B, Crystal Structure Of The Free Radical Intermediate Of Pyruvate:ferredoxin Oxidoreductase From Desulfovibrio Africanus Length = 1231 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 28/90 (31%), Gaps = 18/90 (20%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR----------------RTV 94 A+ E CI C C +CP AI Sbjct: 676 VAINVPQWVPENCIQCNQCAFVCPHSAILPVLAKEEELVGAPANFTALEAKGKELKGYKF 735 Query: 95 RYDIDMIKCIYCGLCQEACP--VDAIVEGP 122 R I+ + C+ CG C + CP A+V P Sbjct: 736 RIQINTLDCMGCGNCADICPPKEKALVMQP 765 >gi|325971008|ref|YP_004247199.1| hypothetical protein SpiBuddy_1180 [Spirochaeta sp. Buddy] gi|324026246|gb|ADY13005.1| protein of unknown function DUF362 [Spirochaeta sp. Buddy] Length = 372 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 11/59 (18%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI C+ C ICPA A+T+E R ID CI C C E CP AI Sbjct: 317 PDPCIQCRKCIDICPANALTME-----------HKRIIIDPSVCIRCYCCHEVCPASAI 364 >gi|302333942|gb|ADL24135.1| molybdopterin oxidoreductase [Staphylococcus aureus subsp. aureus JKD6159] gi|323443733|gb|EGB01346.1| formate dehydrogenase alpha subunit [Staphylococcus aureus O46] Length = 984 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 13/96 (13%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P+EK Y +CI C C C + R + Sbjct: 131 PYEKDYGP----------FYRYDPNQCILCGRCVEACQDIEVNETIRIDWDREHPRVIWD 180 Query: 97 D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 + I+ C+ CG C CP +A++E A Sbjct: 181 NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGY 216 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 17/68 (25%), Gaps = 8/68 (11%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105 R C C CE A Y D +CI Sbjct: 90 RILEKHMLYCTVCDYNNGDCEIHNTMDAWGLQHQTYEYKEKPYEKDYGPFYRYDPNQCIL 149 Query: 106 CGLCQEAC 113 CG C EAC Sbjct: 150 CGRCVEAC 157 >gi|293376714|ref|ZP_06622937.1| putative ferredoxin hydrogenase [Turicibacter sanguinis PC909] gi|325845179|ref|ZP_08168487.1| ferredoxin hydrogenase [Turicibacter sp. HGF1] gi|292644671|gb|EFF62758.1| putative ferredoxin hydrogenase [Turicibacter sanguinis PC909] gi|325488775|gb|EGC91176.1| ferredoxin hydrogenase [Turicibacter sp. HGF1] Length = 590 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 3/78 (3%) Query: 59 GEERCIACKLCEAICPAQAITIE-SGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115 +CI C C A C +A + + T ++ M CI+CG C ACP Sbjct: 144 DTSKCILCGRCVAACREKAGVEVLAFNQRGFKTYIGPAFEACMDDAGCIHCGQCIAACPT 203 Query: 116 DAIVEGPNFEFATETRQE 133 A+ E N E + Sbjct: 204 AALQEHSNINQVVEAIND 221 >gi|269139087|ref|YP_003295788.1| anaerobic sulfite reductase subunit C [Edwardsiella tarda EIB202] gi|267984748|gb|ACY84577.1| anaerobic sulfite reductase subunit C [Edwardsiella tarda EIB202] gi|304559016|gb|ADM41680.1| Anaerobic sulfite reductase subunit C [Edwardsiella tarda FL6-60] Length = 335 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 26/88 (29%), Gaps = 8/88 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + + G + R ERCI C C C A+ S Sbjct: 153 CPNDCAKATMADLGILGVARIHFTPERCIGCGACVRACKHHAVDCLSLLNGKA------- 205 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPN 123 CI CG C ACP A P Sbjct: 206 -TKQESLCIGCGECVLACPTLAWQRRPE 232 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 11/54 (20%), Positives = 14/54 (25%), Gaps = 1/54 (1%) Query: 68 LCEAICPAQAI-TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + A G R +CI CG C AC A+ Sbjct: 144 YHLKVVLAGCPNDCAKATMADLGILGVARIHFTPERCIGCGACVRACKHHAVDC 197 >gi|182412429|ref|YP_001817495.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [Opitutus terrae PB90-1] gi|177839643|gb|ACB73895.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Opitutus terrae PB90-1] Length = 1211 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 31/114 (27%), Gaps = 25/114 (21%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR----------------RT 93 AL CI C C +CP AI + R Sbjct: 685 NIALEIPVWDPAICIQCNKCAMVCPHAAIRPKFFDPAELAKAPEGFQSVPFKSTEFAGRH 744 Query: 94 VRYDIDMIKCIYCGLCQEACPV--------DAIVEGPNFEFATETRQEL-YYDK 138 + C C +C + CP AI P + R++ ++ K Sbjct: 745 YTLQVAAEDCTGCSICVQVCPAKDKTNPKHKAIDMTPQAPLLAKARRDWDFFTK 798 >gi|110801841|ref|YP_698262.1| periplasmic [Fe] hydrogenase 1 [Clostridium perfringens SM101] gi|110682342|gb|ABG85712.1| [Fe] hydrogenase [Clostridium perfringens SM101] Length = 696 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 13/88 (14%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 EE+CI C C+ IC ++ D+ CI CG C CP Sbjct: 21 CRDEEKCIKCGSCKNICTD---------YIGVNGHYSLEKTNDIAVCINCGQCANVCPTS 71 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNN 144 +I E ++ + ++ DK++++ Sbjct: 72 SITEVFDY----KKVEDAINDKDKIVIV 95 >gi|110803645|ref|YP_699341.1| pyruvate-flavodoxin oxidoreductase [Clostridium perfringens SM101] gi|110684146|gb|ABG87516.1| pyruvate-flavodoxin oxidoreductase [Clostridium perfringens SM101] Length = 1171 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 29/106 (27%), Gaps = 20/106 (18%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIES- 82 FE G+ + RG + CI C C +CP A Sbjct: 666 FEPGTAAYEKRGIGINIPEWI-ADNCIQCNQCAYVCPHATIRPFLLTEEEAKNAPASTKL 724 Query: 83 --GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP--VDAIVEGPNF 124 + + C CG C + CP A+V P Sbjct: 725 VAAKALKTEEPMQFTMAVSTLDCTGCGNCAQVCPAKEKALVMKPQH 770 >gi|83311764|ref|YP_422028.1| ferredoxin [Magnetospirillum magneticum AMB-1] gi|82946605|dbj|BAE51469.1| Ferredoxin [Magnetospirillum magneticum AMB-1] Length = 669 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 44/144 (30%), Gaps = 20/144 (13%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFK--AKTTINYPFEKGSTSPRFRGEHALRRYPNG 59 R FL L L L + + P E G Sbjct: 465 RPVEPAAEFLVLGGKRQTLGLALTHLHRHAPAPVAVLPLEAGDPFGTI---------AVD 515 Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + +C C C + CPA+A++ I + C+ CGLC+ CP A+ Sbjct: 516 QAKCTLCMACVSACPAKALSGHPDKPSLG---------ILEVNCVQCGLCRVTCPEKAVS 566 Query: 120 EGPNFEFATETRQELYYDKERLLN 143 P F +E R +E Sbjct: 567 LLPRLAFGSEARLRQVLKEEEPYE 590 Score = 34.7 bits (78), Expect = 3.9, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 19/57 (33%), Gaps = 11/57 (19%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 +AC C CP+ A++ + D C G C CP AI Sbjct: 283 VACTRCLDACPSGALSPQGDAAAVDAHV-----------CGGHGPCASVCPTGAIRF 328 >gi|15598687|ref|NP_252181.1| electron transport complex protein RnfC [Pseudomonas aeruginosa PAO1] gi|17369004|sp|Q9HYB8|RNFC_PSEAE RecName: Full=Electron transport complex protein rnfC gi|9949637|gb|AAG06879.1|AE004770_4 probable ferredoxin [Pseudomonas aeruginosa PAO1] Length = 774 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 38/97 (39%), Gaps = 10/97 (10%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 CI C C +CP + + G ++ CI CG C CP +I Sbjct: 368 PCIRCGDCAQVCPVS-LLPQQLHFFALGDEHEQLLAHNLFDCIECGACAYVCP-SSIPLV 425 Query: 122 PNFEFAT-ETRQELYYDKERLL---NNGDRWESEIVR 154 + + E R++ +++LL + +R+E R Sbjct: 426 QYYRASKAEIREQ----RQKLLKAEQSRERFEQRQAR 458 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 17/54 (31%) Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNI 156 CI CG C + CPV + + +F GD E + N+ Sbjct: 369 CIRCGDCAQVCPVSLLPQQLHF-----------------FALGDEHEQLLAHNL 405 >gi|333031460|ref|ZP_08459521.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Bacteroides coprosuis DSM 18011] gi|332742057|gb|EGJ72539.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Bacteroides coprosuis DSM 18011] Length = 1183 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 30/93 (32%), Gaps = 15/93 (16%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG A N E CI C C +CP A T Sbjct: 676 RGVAAFVPEWN-PENCIQCNKCAYVCPHASIRPFVLDEEEQKGANFPSLKAVGKQFNGMT 734 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 R +D++ C+ CG C + CP + G E Sbjct: 735 FRIQVDVLDCLGCGNCADVCPGNPRKGGKALEM 767 >gi|332295738|ref|YP_004437661.1| Glutamate synthase (NADPH) [Thermodesulfobium narugense DSM 14796] gi|332178841|gb|AEE14530.1| Glutamate synthase (NADPH) [Thermodesulfobium narugense DSM 14796] Length = 504 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 18/61 (29%), Gaps = 10/61 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C C A+ + KC+ C C CP AI Sbjct: 16 DRELCIKCGQCVKNCGFSALMQDKDKNVKPIH----------EKCVACQRCMYVCPTKAI 65 Query: 119 V 119 Sbjct: 66 Q 66 >gi|311742320|ref|ZP_07716129.1| ferredoxin--NADP(+) reductase C-terminal domain protein [Aeromicrobium marinum DSM 15272] gi|311313948|gb|EFQ83856.1| ferredoxin--NADP(+) reductase C-terminal domain protein [Aeromicrobium marinum DSM 15272] Length = 559 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 22/77 (28%), Gaps = 6/77 (7%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 C A C CP I ID + C+ CG C ACP Sbjct: 1 MPHVVTRSCCADASCTFACPVNCIHPTPDEPD---FGTAEMLYIDPVSCVDCGACVRACP 57 Query: 115 VDAIVEGP---NFEFAT 128 V AIV E Sbjct: 58 VGAIVPHTKLGEHELPF 74 >gi|257423792|ref|ZP_05600221.1| formate dehydrogenase alpha subunit [Staphylococcus aureus subsp. aureus 55/2053] gi|257426472|ref|ZP_05602874.1| formate dehydrogenase alpha subunit [Staphylococcus aureus subsp. aureus 65-1322] gi|257429111|ref|ZP_05605498.1| formate dehydrogenase [Staphylococcus aureus subsp. aureus 68-397] gi|257431757|ref|ZP_05608120.1| formate dehydrogenase alpha subunit [Staphylococcus aureus subsp. aureus E1410] gi|257434717|ref|ZP_05610768.1| formate dehydrogenase alpha subunit [Staphylococcus aureus subsp. aureus M876] gi|282902216|ref|ZP_06310109.1| formate dehydrogenase, alpha subunit [Staphylococcus aureus subsp. aureus C160] gi|282906650|ref|ZP_06314498.1| formate dehydrogenase [Staphylococcus aureus subsp. aureus Btn1260] gi|282909625|ref|ZP_06317434.1| formate dehydrogenase, alpha subunit [Staphylococcus aureus subsp. aureus WW2703/97] gi|282911870|ref|ZP_06319666.1| formate dehydrogenase, alpha subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|282915163|ref|ZP_06322940.1| formate dehydrogenase, alpha subunit [Staphylococcus aureus subsp. aureus M899] gi|282920889|ref|ZP_06328607.1| formate dehydrogenase [Staphylococcus aureus subsp. aureus C427] gi|282925795|ref|ZP_06333443.1| formate dehydrogenase [Staphylococcus aureus subsp. aureus C101] gi|283959090|ref|ZP_06376531.1| formate dehydrogenase, alpha subunit [Staphylococcus aureus subsp. aureus A017934/97] gi|293497563|ref|ZP_06665417.1| formate dehydrogenase [Staphylococcus aureus subsp. aureus 58-424] gi|293511140|ref|ZP_06669837.1| formate dehydrogenase [Staphylococcus aureus subsp. aureus M809] gi|293549747|ref|ZP_06672419.1| formate dehydrogenase, alpha subunit [Staphylococcus aureus subsp. aureus M1015] gi|297589619|ref|ZP_06948260.1| formate dehydrogenase alpha subunit [Staphylococcus aureus subsp. aureus MN8] gi|257272810|gb|EEV04912.1| formate dehydrogenase alpha subunit [Staphylococcus aureus subsp. aureus 55/2053] gi|257276103|gb|EEV07554.1| formate dehydrogenase alpha subunit [Staphylococcus aureus subsp. aureus 65-1322] gi|257279592|gb|EEV10179.1| formate dehydrogenase [Staphylococcus aureus subsp. aureus 68-397] gi|257282636|gb|EEV12768.1| formate dehydrogenase alpha subunit [Staphylococcus aureus subsp. aureus E1410] gi|257285313|gb|EEV15429.1| formate dehydrogenase alpha subunit [Staphylococcus aureus subsp. aureus M876] gi|282312624|gb|EFB43028.1| formate dehydrogenase [Staphylococcus aureus subsp. aureus C101] gi|282315304|gb|EFB45688.1| formate dehydrogenase [Staphylococcus aureus subsp. aureus C427] gi|282320884|gb|EFB51218.1| formate dehydrogenase, alpha subunit [Staphylococcus aureus subsp. aureus M899] gi|282323566|gb|EFB53882.1| formate dehydrogenase, alpha subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|282326199|gb|EFB56503.1| formate dehydrogenase, alpha subunit [Staphylococcus aureus subsp. aureus WW2703/97] gi|282329549|gb|EFB59070.1| formate dehydrogenase [Staphylococcus aureus subsp. aureus Btn1260] gi|282596675|gb|EFC01634.1| formate dehydrogenase, alpha subunit [Staphylococcus aureus subsp. aureus C160] gi|283788682|gb|EFC27509.1| formate dehydrogenase, alpha subunit [Staphylococcus aureus subsp. aureus A017934/97] gi|290918794|gb|EFD95870.1| formate dehydrogenase, alpha subunit [Staphylococcus aureus subsp. aureus M1015] gi|291096494|gb|EFE26752.1| formate dehydrogenase [Staphylococcus aureus subsp. aureus 58-424] gi|291466127|gb|EFF08656.1| formate dehydrogenase [Staphylococcus aureus subsp. aureus M809] gi|297578130|gb|EFH96843.1| formate dehydrogenase alpha subunit [Staphylococcus aureus subsp. aureus MN8] gi|312437277|gb|ADQ76348.1| NAD-dependent formate dehydrogenase [Staphylococcus aureus subsp. aureus TCH60] gi|315193569|gb|EFU23965.1| putative bifunctional protein [Staphylococcus aureus subsp. aureus CGS00] Length = 984 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 13/96 (13%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P+EK Y +CI C C C + R + Sbjct: 131 PYEKDYGP----------FYRYDPNQCILCGRCVEACQDIEVNETIRIDWDREHPRVIWD 180 Query: 97 D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 + I+ C+ CG C CP +A++E A Sbjct: 181 NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGY 216 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 17/68 (25%), Gaps = 8/68 (11%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105 R C C CE A Y D +CI Sbjct: 90 RILEKHMLYCTVCDYNNGDCEIHNTMDAWGLQHQTYEYKEKPYEKDYGPFYRYDPNQCIL 149 Query: 106 CGLCQEAC 113 CG C EAC Sbjct: 150 CGRCVEAC 157 >gi|254440924|ref|ZP_05054417.1| formate dehydrogenase, alpha subunit [Octadecabacter antarcticus 307] gi|198251002|gb|EDY75317.1| formate dehydrogenase, alpha subunit [Octadecabacter antarcticus 307] Length = 962 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 28/82 (34%), Gaps = 4/82 (4%) Query: 55 RYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + +CI C C C A+TIE + D C+ CG C Sbjct: 175 YFTYDPAKCIVCSRCVRACEEVQGTFALTIEGMGFNSRVSAGAGGDDFMSSDCVSCGACV 234 Query: 111 EACPVDAIVEGPNFEFATETRQ 132 +ACP + E E T R Sbjct: 235 QACPTATLQEKSVIEMGTPERS 256 >gi|315231077|ref|YP_004071513.1| indolepyruvate oxidoreductase subunit [Thermococcus barophilus MP] gi|315184105|gb|ADT84290.1| indolepyruvate oxidoreductase subunit [Thermococcus barophilus MP] Length = 645 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 10/78 (12%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 RGE L Y E++C CK+C AI ++ + ++ + C CG Sbjct: 578 RGEKWLI-YTVNEDKCTGCKICINAYGCPAIYWDAEKKKA---------QVNPLMCWGCG 627 Query: 108 LCQEACPVDAIVEGPNFE 125 C + CP A E Sbjct: 628 GCAQVCPFGAFEVMKEGE 645 >gi|149926432|ref|ZP_01914693.1| putative iron-sulfur binding protein [Limnobacter sp. MED105] gi|149824795|gb|EDM84009.1| putative iron-sulfur binding protein [Limnobacter sp. MED105] Length = 704 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 9/79 (11%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +++C C C + CPA A+ R C+ CGLC E CP +A+ Sbjct: 570 NKDKCTLCMSCTSACPASALIDNPEMPQLRFIERN---------CVQCGLCVETCPENAM 620 Query: 119 VEGPNFEFATETRQELYYD 137 P R++ + Sbjct: 621 QLVPQLLLGPAAREKRVLN 639 Score = 41.6 bits (96), Expect = 0.039, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 18/55 (32%), Gaps = 11/55 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C +AI +++ C+ CG C CP AI Sbjct: 328 CNSCIDACSTKAIKSAGEK-----------IEVNPHLCLGCGACTTVCPTGAIQF 371 Score = 37.8 bits (86), Expect = 0.57, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 13/21 (61%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 +DM C CG C +ACP +I Sbjct: 199 VDMEMCTRCGACVDACPTQSI 219 >gi|149378171|ref|ZP_01895888.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Marinobacter algicola DG893] gi|149357533|gb|EDM46038.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Marinobacter algicola DG893] Length = 192 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 28/82 (34%), Gaps = 10/82 (12%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E E A R E+ CI C C CP AI + + + Sbjct: 92 EPQPLDAEHGVEQAKRVAVIREDECIGCTKCIQACPVDAILGAAK----------HMHTV 141 Query: 99 DMIKCIYCGLCQEACPVDAIVE 120 +C C LC E CPVD I Sbjct: 142 IESECTGCDLCVEPCPVDCIDM 163 >gi|118431333|ref|NP_147723.2| putative ATPase RIL [Aeropyrum pernix K1] gi|116062656|dbj|BAA80104.2| ABCE1 homolog [Aeropyrum pernix K1] Length = 614 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 26/76 (34%), Gaps = 3/76 (3%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGP--RCHDGTRRTVRYDIDMIKCIYC 106 G LR + C K C C A +SG + I CI C Sbjct: 3 GGLRLRLAVIDYDSCKP-KKCSYECIAVCPVNKSGRGVAIDADMASRGKPVIYEDACIGC 61 Query: 107 GLCQEACPVDAIVEGP 122 LC +ACP DAI Sbjct: 62 ALCVKACPFDAIYIVN 77 >gi|91773868|ref|YP_566560.1| hypothetical protein Mbur_1929 [Methanococcoides burtonii DSM 6242] gi|91712883|gb|ABE52810.1| Phosphoadenosine phosphosulfate reductase fused to RNA-binding PUA and 4Fe-4S binding domains [Methanococcoides burtonii DSM 6242] Length = 633 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 12/54 (22%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 +C+ C +C CP ITIE G I KCI+CG C E CPV Sbjct: 588 KCMGCGVCVGKCPKNCITIEDGKA------------IISSKCIHCGACVEICPV 629 Score = 35.5 bits (80), Expect = 2.4, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 14/33 (42%) Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 R R +KC+ CG+C CP + I Sbjct: 576 MTRIERAVRRSLKCMGCGVCVGKCPKNCITIED 608 >gi|256827263|ref|YP_003151222.1| 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family/2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family [Cryptobacterium curtum DSM 15641] gi|256583406|gb|ACU94540.1| 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family/2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family [Cryptobacterium curtum DSM 15641] Length = 355 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 8/65 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +RC C C CP AI V +D C C +C++ CP DAI Sbjct: 261 DAQRCTGCLQCYLYCPDGAIKRTPSAA--------VVVSVDTEFCKGCAVCEQVCPFDAI 312 Query: 119 VEGPN 123 Sbjct: 313 SMVSE 317 Score = 33.9 bits (76), Expect = 6.9, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 13/32 (40%) Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 R R +D +C C C CP AI P Sbjct: 253 WRERRPVVDAQRCTGCLQCYLYCPDGAIKRTP 284 >gi|224023411|ref|ZP_03641777.1| hypothetical protein BACCOPRO_00110 [Bacteroides coprophilus DSM 18228] gi|224016633|gb|EEF74645.1| hypothetical protein BACCOPRO_00110 [Bacteroides coprophilus DSM 18228] Length = 400 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 12/62 (19%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ C C +C C AI P +ID+ C CG C +ACP A+ Sbjct: 12 NKDICTQCGICADSCTFGAIQFNEYP------------EIDINSCRLCGTCVQACPATAL 59 Query: 119 VE 120 Sbjct: 60 TM 61 >gi|222099662|ref|YP_002534230.1| NADH dehydrogenase [Thermotoga neapolitana DSM 4359] gi|221572052|gb|ACM22864.1| NADH dehydrogenase [Thermotoga neapolitana DSM 4359] Length = 610 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 10/66 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L Y E+C+ C C +CP Q I+ + + ID +C+ CG C E Sbjct: 541 LISYVIDPEKCVGCTACARVCPVQCISGQ----------VRQPHVIDQAECVRCGSCIEV 590 Query: 113 CPVDAI 118 C AI Sbjct: 591 CRFGAI 596 >gi|206602055|gb|EDZ38537.1| NADH dehydrogenase (quinone) [Leptospirillum sp. Group II '5-way CG'] Length = 617 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 10/66 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L +Y EE C C LCE +CP+ ++T E G H ID+ CI C C +A Sbjct: 561 LIKYVVIEEDCTTCGLCEPVCPSGSVTWEKGEVAH----------IDLTTCIRCKACVDA 610 Query: 113 CPVDAI 118 C AI Sbjct: 611 CKFRAI 616 Score = 33.5 bits (75), Expect = 9.1, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 15/42 (35%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 I ++Y + C CGLC+ CP ++ Sbjct: 547 HIRDKRCPGTVCNDLIKYVVIEEDCTTCGLCEPVCPSGSVTW 588 >gi|146295664|ref|YP_001179435.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409240|gb|ABP66244.1| NADH dehydrogenase (quinone) [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 584 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 37/98 (37%), Gaps = 15/98 (15%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 LRY FK + + +K AL Y E+C C LC CP +AIT E Sbjct: 500 TTLRY-FKDEYIAHIRDKKCPAKQC----KALITYSILPEKCTGCGLCARKCPTKAITGE 554 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 R + ID KC CG C C A+ Sbjct: 555 ----------RLKPHVIDQSKCTKCGTCMNVCRFGAVN 582 >gi|209525025|ref|ZP_03273569.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Arthrospira maxima CS-328] gi|209494434|gb|EDZ94745.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Arthrospira maxima CS-328] Length = 1192 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 41/146 (28%), Gaps = 36/146 (24%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPR 85 TS + A + C+ C C +CP A Sbjct: 667 PTGTSKWEKRNVAQEIPVWDADVCVQCGKCIMVCPHAVIRGKAYDESALNGAPETFKTTA 726 Query: 86 CHDGTRRTVRYDID--MIKCIYCGLCQEACP--------VDAIVEGPNFEFATETRQ--E 133 D ++ I C CG+C + CP AI R+ E Sbjct: 727 VRDKAFEGQKFTIQVSPEDCTGCGVCVDVCPAKNKSMPSKKAINMESQPPIRATERENWE 786 Query: 134 LYYDKERLLNNGDRWESEIVRNIVTD 159 + + L N DR RN+ +D Sbjct: 787 FFLN----LPNPDR------RNLRSD 802 >gi|160939851|ref|ZP_02087198.1| hypothetical protein CLOBOL_04742 [Clostridium bolteae ATCC BAA-613] gi|158437285|gb|EDP15050.1| hypothetical protein CLOBOL_04742 [Clostridium bolteae ATCC BAA-613] Length = 357 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 28/125 (22%), Positives = 39/125 (31%), Gaps = 21/125 (16%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 F L+ + E + F ++CI C C+ C Sbjct: 150 ATGFGGTLKNLGMGSGSRAGKMEMHNAGKPFV----------HTDKCIGCGACQRNCAHS 199 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 AIT+ ID KC+ CG C ACPVDA+ + R+ Y Sbjct: 200 AITVLERKAS-----------IDTSKCVGCGRCIGACPVDAVDSMCDEANDILNRKIAEY 248 Query: 137 DKERL 141 L Sbjct: 249 TLAVL 253 >gi|110801224|ref|YP_696741.1| pyruvate-flavodoxin oxidoreductase [Clostridium perfringens ATCC 13124] gi|168205869|ref|ZP_02631874.1| pyruvate-flavodoxin oxidoreductase [Clostridium perfringens E str. JGS1987] gi|168208763|ref|ZP_02634388.1| pyruvate-flavodoxin oxidoreductase [Clostridium perfringens B str. ATCC 3626] gi|168212902|ref|ZP_02638527.1| pyruvate-flavodoxin oxidoreductase [Clostridium perfringens CPE str. F4969] gi|168215688|ref|ZP_02641313.1| pyruvate-flavodoxin oxidoreductase [Clostridium perfringens NCTC 8239] gi|169343700|ref|ZP_02864699.1| pyruvate-flavodoxin oxidoreductase [Clostridium perfringens C str. JGS1495] gi|182623964|ref|ZP_02951752.1| pyruvate-flavodoxin oxidoreductase [Clostridium perfringens D str. JGS1721] gi|110675871|gb|ABG84858.1| pyruvate-flavodoxin oxidoreductase [Clostridium perfringens ATCC 13124] gi|169298260|gb|EDS80350.1| pyruvate-flavodoxin oxidoreductase [Clostridium perfringens C str. JGS1495] gi|170662624|gb|EDT15307.1| pyruvate-flavodoxin oxidoreductase [Clostridium perfringens E str. JGS1987] gi|170713032|gb|EDT25214.1| pyruvate-flavodoxin oxidoreductase [Clostridium perfringens B str. ATCC 3626] gi|170715463|gb|EDT27645.1| pyruvate-flavodoxin oxidoreductase [Clostridium perfringens CPE str. F4969] gi|177910857|gb|EDT73211.1| pyruvate-flavodoxin oxidoreductase [Clostridium perfringens D str. JGS1721] gi|182382191|gb|EDT79670.1| pyruvate-flavodoxin oxidoreductase [Clostridium perfringens NCTC 8239] Length = 1171 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 29/106 (27%), Gaps = 20/106 (18%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIES- 82 FE G+ + RG + CI C C +CP A Sbjct: 666 FEPGTAAYEKRGIGINIPEWI-ADNCIQCNQCAYVCPHATIRPFLLTEEEAKNAPASTKL 724 Query: 83 --GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP--VDAIVEGPNF 124 + + C CG C + CP A+V P Sbjct: 725 VAAKALKTEEPMQFTMAVSTLDCTGCGNCAQVCPAKEKALVMKPQH 770 >gi|18311043|ref|NP_562977.1| pyruvate-flavodoxin oxidoreductase [Clostridium perfringens str. 13] gi|18145725|dbj|BAB81767.1| pyruvate ferredoxin oxidoreductase [Clostridium perfringens str. 13] Length = 1171 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 29/106 (27%), Gaps = 20/106 (18%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIES- 82 FE G+ + RG + CI C C +CP A Sbjct: 666 FEPGTAAYEKRGIGINIPEWI-ADNCIQCNQCAYVCPHATIRPFLLTEEEAKNAPASTKL 724 Query: 83 --GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP--VDAIVEGPNF 124 + + C CG C + CP A+V P Sbjct: 725 VAAKALKTEEPMQFTMAVSTLDCTGCGNCAQVCPAKEKALVMKPQH 770 >gi|298695568|gb|ADI98790.1| formate dehydrogenase alpha subunit [Staphylococcus aureus subsp. aureus ED133] Length = 984 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 13/96 (13%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P+EK Y +CI C C C + R + Sbjct: 131 PYEKDYGP----------FYRYDPNQCILCGRCVEACQDIEVNETIRIDWDREHPRVIWD 180 Query: 97 D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 + I+ C+ CG C CP +A++E A Sbjct: 181 NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGY 216 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 17/68 (25%), Gaps = 8/68 (11%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105 R C C CE A Y D +CI Sbjct: 90 RILEKHMLYCTVCDYNNGDCEIHNTMDAWGLQHQTYEYKEKPYEKDYGPFYRYDPNQCIL 149 Query: 106 CGLCQEAC 113 CG C EAC Sbjct: 150 CGRCVEAC 157 >gi|283785157|ref|YP_003365022.1| electron transport complex protein [Citrobacter rodentium ICC168] gi|282948611|emb|CBG88202.1| electron transport complex protein [Citrobacter rodentium ICC168] Length = 192 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 25/76 (32%), Gaps = 10/76 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI + + + C C LC + CP I Sbjct: 113 DEANCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTQCI 162 Query: 119 VEGPNFEFATETRQEL 134 P + + +L Sbjct: 163 TLRPVADTPDTWKWDL 178 Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C C +ACPVDAI Sbjct: 112 IDEANCIGCTKCIQACPVDAI 132 >gi|241759531|ref|ZP_04757634.1| ferredoxin, 4Fe-4S bacterial type [Neisseria flavescens SK114] gi|241320088|gb|EER56449.1| ferredoxin, 4Fe-4S bacterial type [Neisseria flavescens SK114] Length = 283 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI S + + + +C CGLC CPVD I Sbjct: 77 DEAICIGCTACIRACPVDAIMGASK----------LMHTVISDECTGCGLCVTPCPVDCI 126 Query: 119 VEGP 122 P Sbjct: 127 DMVP 130 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 13/22 (59%), Positives = 14/22 (63%) Query: 98 IDMIKCIYCGLCQEACPVDAIV 119 ID CI C C ACPVDAI+ Sbjct: 76 IDEAICIGCTACIRACPVDAIM 97 >gi|227822747|ref|YP_002826719.1| NADH-quinone oxidoreductase chain G 1 [Sinorhizobium fredii NGR234] gi|227341748|gb|ACP25966.1| NADH-quinone oxidoreductase chain G 1 [Sinorhizobium fredii NGR234] Length = 870 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 3/80 (3%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 + S R + N RCI C+ C +C + G ++ Sbjct: 128 RVFHSRDIRLSPVIIMNVN---RCIQCQRCVRMCEEVVGAVALGTVEKGMDTAVTGFEGS 184 Query: 100 MIKCIYCGLCQEACPVDAIV 119 + C CG C + CPV A++ Sbjct: 185 LASCDQCGNCVQVCPVGALM 204 >gi|224370160|ref|YP_002604324.1| putative fusion protein, heterodisulfide reductase (HdrA) / F420-non-reducing hydrogenase (MvhD) [Desulfobacterium autotrophicum HRM2] gi|223692877|gb|ACN16160.1| putative fusion protein, heterodisulfide reductase (HdrA) / F420-non-reducing hydrogenase (MvhD) [Desulfobacterium autotrophicum HRM2] Length = 511 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 11/63 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + +C+ C C CP AI E+G I + C CG+C CP+DAI Sbjct: 318 DDTKCVICLTCYRCCPHGAIFWENGVAA-----------ISPVACQGCGICASECPMDAI 366 Query: 119 VEG 121 G Sbjct: 367 QIG 369 >gi|21227956|ref|NP_633878.1| flavoprotein [Methanosarcina mazei Go1] gi|20906380|gb|AAM31550.1| Archaeal flavoprotein [Methanosarcina mazei Go1] Length = 239 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 8/69 (11%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 Y ++C C+ C E+ P + V ID++KC CG+C+E C Sbjct: 144 MPYNIDRKQCKHCETC--------PPRENCPHEAISEKNGVTDQIDLLKCKGCGICKELC 195 Query: 114 PVDAIVEGP 122 P +AI GP Sbjct: 196 PYNAIKGGP 204 >gi|299134802|ref|ZP_07027994.1| formate dehydrogenase, alpha subunit [Afipia sp. 1NLS2] gi|298590612|gb|EFI50815.1| formate dehydrogenase, alpha subunit [Afipia sp. 1NLS2] Length = 922 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 3/87 (3%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC---PAQAITIESGPRCHDGTRRTV 94 + + R+ G+H+ + CI C LC C + + Sbjct: 122 ESRFPAAERWSGDHSHPAMSVNLDACIQCGLCVRACREVQVNDVIGMAYRNHDAKIVFDF 181 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEG 121 + C+ CG C +ACP A++ Sbjct: 182 DDPMGESTCVACGECVQACPTGALMPS 208 >gi|298384458|ref|ZP_06994018.1| hydrogenase [Bacteroides sp. 1_1_14] gi|298262737|gb|EFI05601.1| hydrogenase [Bacteroides sp. 1_1_14] Length = 588 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 5/89 (5%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVR 95 PF G SP R ++CI C+ CE++C Q + R T Sbjct: 131 PFNGGELSP--RKREVTSSIVRNMDKCIFCRRCESVCNDVQTVGALGAIRRGFNTTIAPA 188 Query: 96 YDIDM--IKCIYCGLCQEACPVDAIVEGP 122 +D M +C YCG C CPV A+ E Sbjct: 189 FDRMMKDSECTYCGQCVAVCPVGALTERD 217 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 5/67 (7%) Query: 52 ALRRYPNGEERCIACKLCEAICPA-----QAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 L +PN C C CE A + + G T +M KCI+C Sbjct: 99 ILSDHPNDCLTCPKCGNCELQTLALRFNIREMPFNGGELSPRKREVTSSIVRNMDKCIFC 158 Query: 107 GLCQEAC 113 C+ C Sbjct: 159 RRCESVC 165 >gi|253682010|ref|ZP_04862807.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium botulinum D str. 1873] gi|253561722|gb|EES91174.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium botulinum D str. 1873] Length = 1168 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 25/112 (22%), Positives = 40/112 (35%), Gaps = 21/112 (18%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTV 94 A+ E CI C C +CP I + G + Sbjct: 676 IAISVPEWSMENCIQCNQCSYVCPHAVIRPSLLTEEEYNNKPEGFKAIEAKGLKGEKLYY 735 Query: 95 RYDIDMIKCIYCGLCQEAC--PVDAIVEGPNFEFATETRQELYYDKERLLNN 144 ++ ++ C CG C E C P A+V P AT+ +++ YD + L+ Sbjct: 736 SMNVSVLDCTGCGNCAEVCPAPTKALVMKP---AATQEKEQANYDYAQTLSV 784 >gi|158340895|ref|YP_001522063.1| pyruvate-flavodoxin oxidoreductase [Acaryochloris marina MBIC11017] gi|158311136|gb|ABW32749.1| pyruvate-flavodoxin oxidoreductase [Acaryochloris marina MBIC11017] Length = 1207 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 16/73 (21%) Query: 58 NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRYDID--MI 101 E CI C C +CP +A T D +++ I Sbjct: 690 WDPEVCIQCGKCVMVCPHSVIRSKVYDPEHTEKAPTTFKSTAARDHAWSDLKFSIQVAPE 749 Query: 102 KCIYCGLCQEACP 114 C CG+C + CP Sbjct: 750 DCTGCGICVDVCP 762 Score = 35.5 bits (80), Expect = 2.5, Method: Composition-based stats. Identities = 8/19 (42%), Positives = 8/19 (42%) Query: 100 MIKCIYCGLCQEACPVDAI 118 CI CG C CP I Sbjct: 692 PEVCIQCGKCVMVCPHSVI 710 >gi|83855221|ref|ZP_00948751.1| iron-sulfur cluster-binding protein [Sulfitobacter sp. NAS-14.1] gi|83843064|gb|EAP82231.1| iron-sulfur cluster-binding protein [Sulfitobacter sp. NAS-14.1] Length = 650 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 32/106 (30%), Gaps = 14/106 (13%) Query: 36 YPFEK-GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 P K L + C C C ++CP+ A+ Sbjct: 478 QPEAKVIDLPDAAPYGAVLV----DTDACTLCLSCVSLCPSGALGDNPD---------LP 524 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140 + C+ CGLC CP +AI P + ++ +E Sbjct: 525 QLRFQEDACLQCGLCANVCPENAITLKPQLNLTAQAFTQVVLHEEE 570 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 11/53 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C +CP AIT ID + C CG C CP AI Sbjct: 279 CSNCLDLCPTGAITSAGE-----------HVAIDPMICAGCGSCSAVCPSGAI 320 >gi|302184712|ref|ZP_07261385.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas syringae pv. syringae 642] Length = 291 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 10/75 (13%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 RG + E CI C C CP AI + + + + + +C C Sbjct: 76 RGTAPAQVAFIREAECIGCTKCIQACPVDAILGAAK----------LMHTVIIDECTGCD 125 Query: 108 LCQEACPVDAIVEGP 122 LC CPVD I P Sbjct: 126 LCIAPCPVDCIEMHP 140 >gi|300716527|ref|YP_003741330.1| Electron transport complex protein [Erwinia billingiae Eb661] gi|299062363|emb|CAX59480.1| Electron transport complex protein [Erwinia billingiae Eb661] Length = 191 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 28/96 (29%), Gaps = 10/96 (10%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E E + EE CI C C CP AI + + + Sbjct: 92 EPQPLGDEAVLEPERKVAWIDEENCIGCTKCIQACPVDAIVGAT----------RAMHTV 141 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134 C C LC CP D I P + +L Sbjct: 142 LSDVCTGCDLCVAPCPTDCIEMRPVAPTTASWKWDL 177 >gi|254433139|ref|ZP_05046647.1| electron transport complex, RnfABCDGE type, C subunit subfamily [Nitrosococcus oceani AFC27] gi|207089472|gb|EDZ66743.1| electron transport complex, RnfABCDGE type, C subunit subfamily [Nitrosococcus oceani AFC27] Length = 491 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 30/104 (28%), Gaps = 4/104 (3%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 CI C C CP + + D + CI CG C CP I Sbjct: 344 PCIRCGACVEACPVG-LLPQQLYWHARAKELDKTQDYHLFDCIECGCCAYVCPSH-IPLV 401 Query: 122 PNFEFATETR--QELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + +A QE +K L + + + R Sbjct: 402 QYYRYAKSEIWTQEQEREKADLARQRHEFRQQRLAREQQQKAAR 445 >gi|167751835|ref|ZP_02423962.1| hypothetical protein ALIPUT_00077 [Alistipes putredinis DSM 17216] gi|167660076|gb|EDS04206.1| hypothetical protein ALIPUT_00077 [Alistipes putredinis DSM 17216] Length = 1180 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 28/92 (30%), Gaps = 15/92 (16%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQ-------------AITIESGPRCHDGTRR 92 + A+ ++CI C C +CP A E D Sbjct: 681 WEKRGIAVNVPEWQVDKCIQCNQCAYVCPHAVIRPFLATETEAAASGTEWKQGLGDTKEY 740 Query: 93 TVRYDIDMIKCIYCGLCQEACP--VDAIVEGP 122 R I + C C C + CP A++ P Sbjct: 741 KFRIQISPLDCTGCSNCVDVCPAKEKALIMKP 772 >gi|124515811|gb|EAY57320.1| NADH dehydrogenase (quinone) [Leptospirillum rubarum] Length = 617 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 32/66 (48%), Gaps = 10/66 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L +Y EE C C LCE +CP+ ++T E G H ID+ CI C C +A Sbjct: 561 LIKYVVIEEDCTTCGLCEPVCPSGSVTWEKGEVAH----------IDLTTCIRCKACVDA 610 Query: 113 CPVDAI 118 C AI Sbjct: 611 CKFRAI 616 Score = 33.5 bits (75), Expect = 9.3, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 15/42 (35%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 I ++Y + C CGLC+ CP ++ Sbjct: 547 HIRDKRCPGTVCNDLIKYVVIEEDCTTCGLCEPVCPSGSVTW 588 >gi|15898855|ref|NP_343460.1| indolepyruvate ferredoxin oxidoreductase alpha subunit (iorA) [Sulfolobus solfataricus P2] gi|284174241|ref|ZP_06388210.1| indolepyruvate ferredoxin oxidoreductase alpha subunit (iorA) [Sulfolobus solfataricus 98/2] gi|13815352|gb|AAK42250.1| Indolepyruvate ferredoxin oxidoreductase alpha subunit (iorA) [Sulfolobus solfataricus P2] gi|261603266|gb|ACX92869.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Sulfolobus solfataricus 98/2] Length = 612 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 23/68 (33%), Gaps = 10/68 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L + E+C C +C AI + + ID CI CG C Sbjct: 541 LPKAIVDLEKCTGCSICYDYFTCPAIIPRNDKKAE----------IDNYTCIGCGACVPI 590 Query: 113 CPVDAIVE 120 CP AI Sbjct: 591 CPFKAISL 598 >gi|49484525|ref|YP_041749.1| bifunctional protein [Staphylococcus aureus subsp. aureus MRSA252] gi|295428891|ref|ZP_06821515.1| formate dehydrogenase [Staphylococcus aureus subsp. aureus EMRSA16] gi|81650533|sp|Q6GEC4|FDHL_STAAR RecName: Full=Putative formate dehydrogenase SAR2393 gi|49242654|emb|CAG41375.1| putative bifunctional protein [Staphylococcus aureus subsp. aureus MRSA252] gi|295127240|gb|EFG56882.1| formate dehydrogenase [Staphylococcus aureus subsp. aureus EMRSA16] Length = 984 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 13/96 (13%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P+EK Y +CI C C C + R + Sbjct: 131 PYEKDYGP----------FYRYDPNQCILCGRCVEACQDIELNETIRIDWDREHPRVIWD 180 Query: 97 D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 + I+ C+ CG C CP +A++E A Sbjct: 181 NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGY 216 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 17/68 (25%), Gaps = 8/68 (11%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105 R C C CE A Y D +CI Sbjct: 90 RILEKHMLYCTVCDYNNGDCEIHNTMDAWGLQHQTYEYKEKPYEKDYGPFYRYDPNQCIL 149 Query: 106 CGLCQEAC 113 CG C EAC Sbjct: 150 CGRCVEAC 157 >gi|296133064|ref|YP_003640311.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola sp. JR] gi|296031642|gb|ADG82410.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola potens JR] Length = 368 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 11/60 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++CI C C CPA AIT+ I KCI CG C CP AI Sbjct: 191 DADKCIGCTKCTHWCPADAITVNE-----------KVARISEEKCIGCGECTVTCPAHAI 239 >gi|253577979|ref|ZP_04855251.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850297|gb|EES78255.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 1178 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 26/81 (32%), Gaps = 15/81 (18%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQ-----AITIESGPRCHDGTR---------RT 93 RG N E CI C C +CP A+T E +G + Sbjct: 680 RGIAVNVPVWN-PENCIQCNRCAYVCPHAVIRPVALTAEEAANAPEGMKTLDLTGMKEYK 738 Query: 94 VRYDIDMIKCIYCGLCQEACP 114 + + C CG C CP Sbjct: 739 FTMSVSALDCTGCGSCVNVCP 759 >gi|163735778|ref|ZP_02143207.1| dihydropyrimidine dehydrogenase [Roseobacter litoralis Och 149] gi|161390864|gb|EDQ15204.1| dihydropyrimidine dehydrogenase [Roseobacter litoralis Och 149] Length = 434 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 8/95 (8%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + + CI+C C A C E + + +C+ Sbjct: 330 QYLNLNYIAKAQINQADCISCGRCYAAC-------EDTSHQAIAMSEDRVFSVIDEECVA 382 Query: 106 CGLCQEACPV-DAIVEGPNFEFATETRQELYYDKE 139 C LC E CPV + I P + + R +K+ Sbjct: 383 CNLCVEVCPVENCITMVPMEQGKVDPRTGKVVEKD 417 >gi|118589442|ref|ZP_01546848.1| formate dehydrogenase alpha subunit [Stappia aggregata IAM 12614] gi|118438142|gb|EAV44777.1| formate dehydrogenase alpha subunit [Stappia aggregata IAM 12614] Length = 922 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 5/78 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114 + CIAC LCE C + + G+ +D + + C+ CG C ACP Sbjct: 143 NLDACIACNLCERACR-EVQVNDVIGMADRGSHTVPVFDLADPMGLSTCVACGECVSACP 201 Query: 115 VDAIVEGPNFEFATETRQ 132 A++E + R+ Sbjct: 202 TGALMEKSLLDATASKRE 219 >gi|288572803|ref|ZP_06391160.1| molybdopterin oxidoreductase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288568544|gb|EFC90101.1| molybdopterin oxidoreductase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 1075 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI--ESGPRCHDGTRRTVRYD-IDMIKCIYCGLCQE 111 Y ++CI C C C A + R T + ID C +CGLC + Sbjct: 604 FYVRNMDKCILCGQCVRTCDEIAGFHAIDFAKRGFASTISPEYFKGIDASDCTFCGLCVQ 663 Query: 112 ACPVDAIVE 120 CPV A+VE Sbjct: 664 NCPVGALVE 672 Score = 35.1 bits (79), Expect = 3.5, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 9/64 (14%) Query: 59 GEERCIACKL-----CEAICPAQAITIESGPRCHDGTR----RTVRYDIDMIKCIYCGLC 109 RC+ C C+ A ++ + + Y +M KCI CG C Sbjct: 559 DASRCMECGCPDVFECKLRRYAIDYEVDPERVAGEHGKGIEEANEFYVRNMDKCILCGQC 618 Query: 110 QEAC 113 C Sbjct: 619 VRTC 622 >gi|227825061|ref|ZP_03989893.1| hydrogenase large subunit [Acidaminococcus sp. D21] gi|226905560|gb|EEH91478.1| hydrogenase large subunit [Acidaminococcus sp. D21] Length = 501 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 6/70 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY------DIDMIKCIYCGLCQ 110 + C+ C C+ CP A+ S P + + +ID C+ CG C+ Sbjct: 136 HIDYDVCVECGNCKRACPYGAVVEISRPCENACKVHALHMGADKKAEIDKNVCVECGACR 195 Query: 111 EACPVDAIVE 120 ACP AI E Sbjct: 196 GACPFGAIEE 205 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 8/86 (9%) Query: 40 KGSTSPRFRGEHALRRYPNGEERC-----IACKLCEAICPAQAITIESGPRCHDGTRRTV 94 K + P R +H + P G C + +C + + Sbjct: 77 KAVSEPVDRTQHVIAVLPEGCSACPVNKYMITDVCRRCLTHRCMNGCPKKAISV---YQG 133 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVE 120 R ID C+ CG C+ ACP A+VE Sbjct: 134 RAHIDYDVCVECGNCKRACPYGAVVE 159 >gi|254302984|ref|ZP_04970342.1| pyruvate synthase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323176|gb|EDK88426.1| pyruvate synthase [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 1191 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 30/133 (22%), Positives = 47/133 (35%), Gaps = 23/133 (17%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI----------------E 81 FE G+++ RG ++CI C C +CP AI Sbjct: 676 FENGTSAFEKRGVAVDVPIW-DVDKCIQCNQCSYVCPHAAIRPFLINEDELKASPEPLAT 734 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD--AIVEGPNFEFATETRQELYYDKE 139 P R + + C+ CG C CP A+V P E + E +++ K Sbjct: 735 KKPVGKGLDGLAYRIQVSALDCVGCGSCAHVCPAPGKALVMRPIAE-SLEAHEDV---KT 790 Query: 140 RLLNNGDRWESEI 152 L N + S++ Sbjct: 791 DYLYNNVDYRSDL 803 >gi|158521464|ref|YP_001529334.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [Desulfococcus oleovorans Hxd3] gi|158510290|gb|ABW67257.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Desulfococcus oleovorans Hxd3] Length = 1177 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 28/145 (19%), Positives = 42/145 (28%), Gaps = 33/145 (22%) Query: 29 KAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI-------- 78 K + P + + A++ E CI C C +CP AI Sbjct: 650 KLPVSAFSPDGIFPVGTTQYEKRGIAIKVPQWVPENCIQCNQCALVCPHAAIRPALLTEK 709 Query: 79 --------TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP--VDAIVEGP------ 122 + R ++ + C+ CG C CP A+V P Sbjct: 710 ELKKAPEAFTTIEAKGKGLEGYAFRIQVNTLDCMGCGSCAAVCPAKTPALVMQPLATQTD 769 Query: 123 -NFEFATET-----RQELYYDKERL 141 E R +L D+E L Sbjct: 770 TEVENHKYALTLPIRDDL-LDRESL 793 >gi|74318486|ref|YP_316226.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Thiobacillus denitrificans ATCC 25259] gi|74057981|gb|AAZ98421.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Thiobacillus denitrificans ATCC 25259] Length = 1207 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 30/112 (26%), Gaps = 25/112 (22%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQA-----------------ITIESGPRCHDGTRR 92 AL + C C C +CP A + Sbjct: 699 NIALEIPVWEPDLCTQCGKCVFVCPHTAIRARAFPAEAAADAPPAFKHVAAKSKELPAGT 758 Query: 93 TVRYDIDMIKCIYCGLCQEACPVD--------AIVEGPNFEFATETRQELYY 136 V Y + C CG C EACP+ A+ P + R L + Sbjct: 759 RVSYQVAAEDCTGCGDCVEACPIHDKSNIGRRAVNMAPVGPLREQERDNLAF 810 >gi|16760455|ref|NP_456072.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141785|ref|NP_805127.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56413573|ref|YP_150648.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62180046|ref|YP_216463.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|167551571|ref|ZP_02345325.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168229833|ref|ZP_02654891.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168235531|ref|ZP_02660589.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|168819209|ref|ZP_02831209.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194470589|ref|ZP_03076573.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194738361|ref|YP_002114471.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197250299|ref|YP_002146587.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197362497|ref|YP_002142134.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|200390591|ref|ZP_03217202.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204927482|ref|ZP_03218683.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205352829|ref|YP_002226630.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857038|ref|YP_002243689.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213051628|ref|ZP_03344506.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213418458|ref|ZP_03351524.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] gi|213425980|ref|ZP_03358730.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213609896|ref|ZP_03369722.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] gi|213649167|ref|ZP_03379220.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855036|ref|ZP_03383276.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224584033|ref|YP_002637831.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238911690|ref|ZP_04655527.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289824890|ref|ZP_06544311.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|24638184|sp|Q8Z6R0|RNFB_SALTI RecName: Full=Electron transport complex protein rnfB gi|75505763|sp|Q57PH9|RNFB_SALCH RecName: Full=Electron transport complex protein rnfB gi|81677938|sp|Q5PIC0|RNFB_SALPA RecName: Full=Electron transport complex protein rnfB gi|226735425|sp|B5F6I9|RNFB_SALA4 RecName: Full=Electron transport complex protein rnfB gi|226735427|sp|B5QV01|RNFB_SALEP RecName: Full=Electron transport complex protein rnfB gi|226735428|sp|B5RAK1|RNFB_SALG2 RecName: Full=Electron transport complex protein rnfB gi|226735431|sp|B5BKB1|RNFB_SALPK RecName: Full=Electron transport complex protein rnfB gi|226735432|sp|B4TV18|RNFB_SALSV RecName: Full=Electron transport complex protein rnfB gi|254807926|sp|C0Q507|RNFB_SALPC RecName: Full=Electron transport complex protein rnfB gi|25316774|pir||AD0692 probable ferredoxin-like protein, cytoplasmic membrane STY1664 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502751|emb|CAD01909.1| putative ferredoxin-like protein, cytoplasmic membrane [Salmonella enterica subsp. enterica serovar Typhi] gi|29137413|gb|AAO68976.1| putative ferredoxin-like protein, cytoplasmic membrane [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56127830|gb|AAV77336.1| putative ferredoxin-like protein, cytoplasmic membrane [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62127679|gb|AAX65382.1| putative alternative beta subunit of Na+-transporting NADH:ubiquinone oxidoreductase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|194456953|gb|EDX45792.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194713863|gb|ACF93084.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197093974|emb|CAR59470.1| putative ferredoxin-like protein, cytoplasmic membrane [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197214002|gb|ACH51399.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197290969|gb|EDY30322.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|199603036|gb|EDZ01582.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|204322824|gb|EDZ08020.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205272610|emb|CAR37519.1| putative electron transport complex protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205323557|gb|EDZ11396.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205335259|gb|EDZ22023.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205343637|gb|EDZ30401.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|206708841|emb|CAR33171.1| Electron transport complex protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224468560|gb|ACN46390.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|320086066|emb|CBY95840.1| Electron transport complex protein rnfB [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322616075|gb|EFY12991.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322620524|gb|EFY17386.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322622925|gb|EFY19767.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628768|gb|EFY25553.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631478|gb|EFY28236.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638813|gb|EFY35508.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641120|gb|EFY37763.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646613|gb|EFY43121.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650863|gb|EFY47254.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654537|gb|EFY50858.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658696|gb|EFY54954.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322665218|gb|EFY61406.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667963|gb|EFY64123.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671625|gb|EFY67746.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677329|gb|EFY73393.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680008|gb|EFY76047.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685563|gb|EFY81559.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322714516|gb|EFZ06087.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323194066|gb|EFZ79265.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198189|gb|EFZ83298.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323202875|gb|EFZ87910.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323205624|gb|EFZ90587.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211027|gb|EFZ95886.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217294|gb|EGA02014.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221948|gb|EGA06339.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323232169|gb|EGA16275.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234340|gb|EGA18427.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237791|gb|EGA21850.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323242645|gb|EGA26666.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323247768|gb|EGA31708.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323254487|gb|EGA38299.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323254811|gb|EGA38609.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323266728|gb|EGA50215.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323268766|gb|EGA52225.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326627900|gb|EGE34243.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 192 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI + + + C C LC + CP I Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTHCI 162 Query: 119 VEGPNFEFATETRQEL 134 P E + +L Sbjct: 163 ELRPVNETPDSWKWDL 178 Score = 35.5 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C C +ACPVDAI Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132 >gi|148263283|ref|YP_001229989.1| electron transfer flavoprotein, alpha subunit [Geobacter uraniireducens Rf4] gi|146396783|gb|ABQ25416.1| electron transfer flavoprotein, alpha subunit [Geobacter uraniireducens Rf4] Length = 441 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 31/84 (36%), Gaps = 16/84 (19%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACK-LCEAICPAQAITIESGPRCHDGTRRTVRY 96 E + RG+ L +CIAC C++ CP AI + Sbjct: 3 DEAKKPLKKPRGKACLI-----AGKCIACGARCQSACPVDAIEMNDAGEP---------- 47 Query: 97 DIDMIKCIYCGLCQEACPVDAIVE 120 I+ KCI C C + CP AI Sbjct: 48 IINESKCIGCVKCVKVCPAQAIEM 71 Score = 35.1 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 1/43 (2%) Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGL-CQEACPVDAIVEGP 122 + + + + KCI CG CQ ACPVDAI Sbjct: 1 MTDEAKKPLKKPRGKACLIAGKCIACGARCQSACPVDAIEMND 43 >gi|114563345|ref|YP_750858.1| electron transport complex protein RnfC [Shewanella frigidimarina NCIMB 400] gi|114334638|gb|ABI72020.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella frigidimarina NCIMB 400] Length = 846 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 39/109 (35%), Gaps = 11/109 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114 E+ CI C C CPA P+ + YD ++ CI CG C CP Sbjct: 375 DEKACIRCGECAVACPA-----LLLPQQLFWHAKAEEYDKAASFNLKDCIECGCCSYVCP 429 Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 I + A + +K + R+E+ + + + + R Sbjct: 430 -SDIPLVEYYRVAKSALKNAAEEKLQAEQAKIRFETRL-QRLEDEKNAR 476 >gi|325473842|gb|EGC77030.1| Fe-hydrogenase large subunit family protein [Treponema denticola F0402] Length = 500 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 6/67 (8%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112 EE+CI C +C CP A+ P + D ID KCI+CG C Sbjct: 153 DEEKCINCGICLKNCPYHAVIKIPVPCEEACPVGAISKDENGKERIDYHKCIFCGNCMRE 212 Query: 113 CPVDAIV 119 CP A++ Sbjct: 213 CPFGAMM 219 Score = 38.5 bits (88), Expect = 0.29, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 5/80 (6%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV-----RYDIDMIK 102 R + +E C AC + + + P + + + R ID K Sbjct: 97 REKPTWPMLTVLDEACNACVKSKYMITNACQACVARPCMMNCPKTAIAISGGRSRIDEEK 156 Query: 103 CIYCGLCQEACPVDAIVEGP 122 CI CG+C + CP A+++ P Sbjct: 157 CINCGICLKNCPYHAVIKIP 176 >gi|220903579|ref|YP_002478891.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867878|gb|ACL48213.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 1178 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 45/141 (31%), Gaps = 26/141 (18%) Query: 29 KAKTTINYP--FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA----------- 75 K + P F T+ + A+ E CI C C +CP Sbjct: 651 KLPVSAMDPAGFMPLGTAACEKRGVAIAIPEWQVENCIQCCQCSFVCPHAAIRPVLATEE 710 Query: 76 ---QAITIESGPRCHDGTRRTVRYDI--DMIKCIYCGLCQEACPV--DAIVEGPNFEFAT 128 A + + +++ I C+ CG C + CP A+V P Sbjct: 711 ELEGAPAAFATKDAMGKELKGLKFRIQVYPEDCLGCGSCADVCPAKNKALVMKPLETQMD 770 Query: 129 ETRQELYYD------KERLLN 143 + + L + K++LL Sbjct: 771 DQKANLAFAEAHVSLKDKLLA 791 >gi|119720693|ref|YP_921188.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Thermofilum pendens Hrk 5] gi|119525813|gb|ABL79185.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermofilum pendens Hrk 5] Length = 229 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 7/64 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +++CI C C ++C + A I + + ++D KC+ CG C + CPV A+ Sbjct: 159 DKDKCIGCGACVSVCASIAGAI-------KWRKSGRKVEVDAAKCLGCGACVKECPVGAL 211 Query: 119 VEGP 122 P Sbjct: 212 SLTP 215 Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 5/55 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 C+ C +CP A+ + GT + KCI CG C C Sbjct: 124 DGGVCVLDFKCVDVCPTGALQRLPKEKAKMGTALLDK-----DKCIGCGACVSVC 173 Score = 34.7 bits (78), Expect = 4.0, Method: Composition-based stats. Identities = 11/23 (47%), Positives = 13/23 (56%) Query: 103 CIYCGLCQEACPVDAIVEGPNFE 125 C CG C E CP IV+ P +E Sbjct: 90 CARCGRCAEVCPQKIIVQVPVWE 112 Score = 33.5 bits (75), Expect = 8.7, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 21/75 (28%), Gaps = 2/75 (2%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R C C C +CP + I P +D C+ Sbjct: 75 RRPPGAVDEAEFVVVCARCGRCAEVCPQKIIVQV--PVWESVVAAGTPVLVDGGVCVLDF 132 Query: 108 LCQEACPVDAIVEGP 122 C + CP A+ P Sbjct: 133 KCVDVCPTGALQRLP 147 >gi|57233555|ref|YP_180831.1| trichloroethene reductive dehalogenase [Dehalococcoides ethenogenes 195] gi|57224003|gb|AAW39060.1| trichloroethene reductive dehalogenase [Dehalococcoides ethenogenes 195] Length = 554 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 3/60 (5%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID---MIKCIYCGLCQEACPVD 116 E C C +C CP QAI+ E Y+ KCI C +C+ CP Sbjct: 434 REFCKTCGICAEHCPTQAISHEGPRYDSPHWDCVSGYEGWHLDYHKCINCTICEAVCPFF 493 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%) Query: 103 CIYCGLCQEACPVDAI-VEGPNFE 125 C CG+C E CP AI EGP ++ Sbjct: 437 CKTCGICAEHCPTQAISHEGPRYD 460 >gi|8163916|gb|AAF73916.1|AF228507_2 trichloroethene reductive dehalogenase [Dehalococcoides ethenogenes] Length = 554 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 3/60 (5%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID---MIKCIYCGLCQEACPVD 116 E C C +C CP QAI+ E Y+ KCI C +C+ CP Sbjct: 434 REFCKTCGICAEHCPTQAISHEGPRYDSPHWDCVSGYEGWHLDYHKCINCTICEAVCPFF 493 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%) Query: 103 CIYCGLCQEACPVDAI-VEGPNFE 125 C CG+C E CP AI EGP ++ Sbjct: 437 CKTCGICAEHCPTQAISHEGPRYD 460 >gi|21232095|ref|NP_638012.1| formate dehydrogenase related protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66767778|ref|YP_242540.1| formate dehydrogenase related protein [Xanthomonas campestris pv. campestris str. 8004] gi|188990892|ref|YP_001902902.1| formate dehydrogenase [Xanthomonas campestris pv. campestris str. B100] gi|21113840|gb|AAM41936.1| formate dehydrogenase related protein [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66573110|gb|AAY48520.1| formate dehydrogenase related protein [Xanthomonas campestris pv. campestris str. 8004] gi|167732652|emb|CAP50846.1| formate dehydrogenase [Xanthomonas campestris pv. campestris] Length = 990 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 35/97 (36%), Gaps = 17/97 (17%) Query: 25 RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84 RY F+ K P+EK ++P Y ++CI C C C + Sbjct: 126 RYAFQRK-----PYEKDHSNP---------FYTYDPDQCILCGRCVEACQKVEVNETLSI 171 Query: 85 RCHDGTRRTVR---YDIDMIKCIYCGLCQEACPVDAI 118 R + I+ C+ CG C CP +A+ Sbjct: 172 DFSMEHPRVLWDGGKPINASSCVSCGHCVTVCPCNAL 208 Score = 37.8 bits (86), Expect = 0.48, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 2/66 (3%) Query: 66 CKLCEAICPAQAI--TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 C L + + ++ Y D +CI CG C EAC + E + Sbjct: 111 CTLHNTFADMKMPIQRYAFQRKPYEKDHSNPFYTYDPDQCILCGRCVEACQKVEVNETLS 170 Query: 124 FEFATE 129 +F+ E Sbjct: 171 IDFSME 176 >gi|242243890|ref|ZP_04798333.1| formate dehydrogenase, alpha subunit [Staphylococcus epidermidis W23144] gi|242232664|gb|EES34976.1| formate dehydrogenase, alpha subunit [Staphylococcus epidermidis W23144] Length = 989 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 29/89 (32%), Gaps = 13/89 (14%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P+EK Y +CI C C C + R + Sbjct: 137 PYEKDYGP----------FYRYDPNQCILCGRCVEACQDVEVNETIRIDWERDHPRVIWD 186 Query: 97 D---IDMIKCIYCGLCQEACPVDAIVEGP 122 + I+ C+ CG C CP +A++E Sbjct: 187 NDVPINESSCVSCGQCATVCPCNAMMEVN 215 Score = 42.0 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 17/68 (25%), Gaps = 8/68 (11%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105 R C C CE R Y D +CI Sbjct: 96 RILEKHMLYCTVCDYNNGDCEIHNTMDKWGIQHQTYKYKRKPYEKDYGPFYRYDPNQCIL 155 Query: 106 CGLCQEAC 113 CG C EAC Sbjct: 156 CGRCVEAC 163 >gi|224371827|ref|YP_002605991.1| putative pyridine nucleotide-disulfide oxidoreductase [Desulfobacterium autotrophicum HRM2] gi|223694544|gb|ACN17827.1| putative pyridine nucleotide-disulfide oxidoreductase [Desulfobacterium autotrophicum HRM2] Length = 777 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 29/97 (29%), Gaps = 14/97 (14%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEE--------RCIACKLCEAICPAQAITIESGPRC 86 P +K S + RC C +CE +CP AI+ Sbjct: 684 RLPIDKSRISLEYFDPSIKSYDSLDMCGGECASCGRCRDCHICETVCPEGAISRVELVPD 743 Query: 87 HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 Y D CI CG C ACP PN Sbjct: 744 GY------EYRADPELCIGCGFCAGACPCGIWALVPN 774 >gi|189467141|ref|ZP_03015926.1| hypothetical protein BACINT_03525 [Bacteroides intestinalis DSM 17393] gi|224535655|ref|ZP_03676194.1| hypothetical protein BACCELL_00519 [Bacteroides cellulosilyticus DSM 14838] gi|189435405|gb|EDV04390.1| hypothetical protein BACINT_03525 [Bacteroides intestinalis DSM 17393] gi|224522728|gb|EEF91833.1| hypothetical protein BACCELL_00519 [Bacteroides cellulosilyticus DSM 14838] Length = 588 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 35/92 (38%), Gaps = 5/92 (5%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRR 92 P+ G SP R ++CI C+ CE++C Q + R T Sbjct: 128 RRMPYNGGELSP--RKREVTSSIVRNMDKCIFCRRCESVCNEVQTVGALGAIRRGFNTTI 185 Query: 93 TVRYDIDMIK--CIYCGLCQEACPVDAIVEGP 122 +D M C YCG C CPV A+ E Sbjct: 186 APAFDKMMSDSECTYCGQCVAVCPVGALTERD 217 Score = 35.5 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 5/67 (7%) Query: 52 ALRRYPNGEERCIACKLCE---AICPAQAITIESGPRCHDGTRRTVRYDI--DMIKCIYC 106 L +PN C C CE + +R V I +M KCI+C Sbjct: 99 ILSDHPNDCLTCPKCGNCELQTLALRFNIRRMPYNGGELSPRKREVTSSIVRNMDKCIFC 158 Query: 107 GLCQEAC 113 C+ C Sbjct: 159 RRCESVC 165 >gi|217076873|ref|YP_002334589.1| Fe-hydrogenase, subunit beta [Thermosipho africanus TCF52B] gi|217036726|gb|ACJ75248.1| Fe-hydrogenase, subunit beta [Thermosipho africanus TCF52B] Length = 624 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 27/69 (39%), Positives = 33/69 (47%), Gaps = 10/69 (14%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 ALR+Y E C +C LC CP AI+ E G Y ID KC+ CG+C E Sbjct: 565 ALRKYVINPELCKSCSLCARACPQGAISGERGKP----------YVIDQEKCVKCGICFE 614 Query: 112 ACPVDAIVE 120 C +AI Sbjct: 615 KCKFNAIEL 623 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 8/73 (10%) Query: 78 ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 + +G +Y I+ C C LC ACP AI + E + D Sbjct: 551 MEHINGKCPSGTCTALRKYVINPELCKSCSLCARACPQGAI--------SGERGKPYVID 602 Query: 138 KERLLNNGDRWES 150 +E+ + G +E Sbjct: 603 QEKCVKCGICFEK 615 >gi|229816103|ref|ZP_04446422.1| hypothetical protein COLINT_03157 [Collinsella intestinalis DSM 13280] gi|229808315|gb|EEP44098.1| hypothetical protein COLINT_03157 [Collinsella intestinalis DSM 13280] Length = 1181 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 17/101 (16%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ------------AITIESGPR 85 FE G++ RG + + + +CI C C +CP A E+ Sbjct: 676 FELGASQFEKRGVAVMVPHWDE-TKCIQCNQCAYVCPHATIRPFALNEAEVAEAPETMRM 734 Query: 86 CHDGTRRTVRYD----IDMIKCIYCGLCQEACPVDAIVEGP 122 + Y + + C+ C C + CP DA+ P Sbjct: 735 LDVKIPKDTGYKFAIAVSPLDCMGCTNCAKVCPKDALTMVP 775 >gi|156938164|ref|YP_001435960.1| nitrate reductase, subunit H [Ignicoccus hospitalis KIN4/I] gi|156567148|gb|ABU82553.1| putative nitrate reductase, subunit H [Ignicoccus hospitalis KIN4/I] Length = 321 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 8/69 (11%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + N RC C+LC +CP G D+ +C CG C E Sbjct: 254 FKIKINDVSRCTKCRLCSMVCPMG--------IDVMGDYVLKNKDVTDYRCFRCGRCVEV 305 Query: 113 CPVDAIVEG 121 CP + I G Sbjct: 306 CPTNVISLG 314 >gi|222053576|ref|YP_002535938.1| molybdopterin oxidoreductase [Geobacter sp. FRC-32] gi|221562865|gb|ACM18837.1| molybdopterin oxidoreductase [Geobacter sp. FRC-32] Length = 828 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 21/64 (32%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RCI C C IC + + C +CG C CPV A+ Sbjct: 143 DMNRCIHCGKCARICDEIVSFGAYTFINRGIEAKMGTEFDGPLNCEFCGSCVSVCPVGAL 202 Query: 119 VEGP 122 V P Sbjct: 203 VSRP 206 >gi|29345534|ref|NP_809037.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides thetaiotaomicron VPI-5482] gi|253571681|ref|ZP_04849087.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 1_1_6] gi|29337426|gb|AAO75231.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides thetaiotaomicron VPI-5482] gi|251838889|gb|EES66974.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 1_1_6] Length = 588 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 5/89 (5%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVR 95 PF G SP R ++CI C+ CE++C Q + R T Sbjct: 131 PFNGGELSP--RKREVTSSIVRNMDKCIFCRRCESVCNDVQTVGALGAIRRGFNTTIAPA 188 Query: 96 YDIDM--IKCIYCGLCQEACPVDAIVEGP 122 +D M +C YCG C CPV A+ E Sbjct: 189 FDRMMKDSECTYCGQCVAVCPVGALTERD 217 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 5/67 (7%) Query: 52 ALRRYPNGEERCIACKLCEAICPA-----QAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 L +PN C C CE A + + G T +M KCI+C Sbjct: 99 ILSDHPNDCLTCPKCGNCELQTLALRFNIREMPFNGGELSPRKREVTSSIVRNMDKCIFC 158 Query: 107 GLCQEAC 113 C+ C Sbjct: 159 RRCESVC 165 >gi|332298933|ref|YP_004440855.1| Ferredoxin hydrogenase [Treponema brennaborense DSM 12168] gi|332182036|gb|AEE17724.1| Ferredoxin hydrogenase [Treponema brennaborense DSM 12168] Length = 491 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 6/67 (8%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112 E+C+ C LC CP AI P + D ID KCI+CG C Sbjct: 145 DPEKCVNCGLCMQNCPYHAIIKIPVPCEEACPVGAISKDETGKERIDYHKCIFCGNCMRE 204 Query: 113 CPVDAIV 119 CP A++ Sbjct: 205 CPFGAMM 211 Score = 41.6 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 5/80 (6%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV-----RYDIDMIK 102 R + +E C AC + + P + ++ + R ID K Sbjct: 89 REKPTWPMLTVLDEACNACVRSHYMVTNACQACLARPCMMNCAKKAIAITEGRARIDPEK 148 Query: 103 CIYCGLCQEACPVDAIVEGP 122 C+ CGLC + CP AI++ P Sbjct: 149 CVNCGLCMQNCPYHAIIKIP 168 >gi|331269260|ref|YP_004395752.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [Clostridium botulinum BKT015925] gi|329125810|gb|AEB75755.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Clostridium botulinum BKT015925] Length = 1168 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 26/132 (19%), Positives = 44/132 (33%), Gaps = 30/132 (22%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIE----------------SGPRCHDGTRRTV 94 A+ E CI C C +CP I + G + Sbjct: 676 IAISVPEWSMENCIQCNQCSYVCPHAVIRPTLLTEEEYNNKPEGFKAVEAKGLKGEKLYY 735 Query: 95 RYDIDMIKCIYCGLCQEAC--PVDAIVEGP---------NFEFATE-TRQELYYDKERLL 142 ++ + C CG C E C P A+V P N+++A + +E +K Sbjct: 736 SMNVSALDCTGCGNCAEVCPAPTKALVMKPAATQESEQANYDYAQTLSVKENPMNK--YT 793 Query: 143 NNGDRWESEIVR 154 G ++E ++ Sbjct: 794 VKGSQFEKPLLE 805 >gi|303247146|ref|ZP_07333421.1| FAD dependent oxidoreductase [Desulfovibrio fructosovorans JJ] gi|302491572|gb|EFL51457.1| FAD dependent oxidoreductase [Desulfovibrio fructosovorans JJ] Length = 442 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 7/79 (8%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIE-------SGPRCHDGTRRTVRYDIDMIKCIYC 106 R ++CI C+ CE CP +E R + +D+ +C+ C Sbjct: 102 RPRYVDMDKCIGCRKCEYACPVVVPDVEQGGFSGRKAIRIPFSNAIPQKAVLDVTQCMLC 161 Query: 107 GLCQEACPVDAIVEGPNFE 125 G C CP AIV E Sbjct: 162 GKCASVCPTGAIVYDQQPE 180 >gi|297526112|ref|YP_003668136.1| Cobyrinic acid ac-diamide synthase [Staphylothermus hellenicus DSM 12710] gi|297255028|gb|ADI31237.1| Cobyrinic acid ac-diamide synthase [Staphylothermus hellenicus DSM 12710] Length = 329 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 11/70 (15%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 R EE+CI C C +CP A+ + + Y I+ C C C C Sbjct: 68 RYAEIVEEKCINCGECMKVCPFNAVELINNK-----------YVINKWICEGCYTCSFVC 116 Query: 114 PVDAIVEGPN 123 P AI + Sbjct: 117 PTKAIRMIRD 126 >gi|242398139|ref|YP_002993563.1| indolepyruvate: ferredoxin oxidoreductase, alpha subunit [Thermococcus sibiricus MM 739] gi|242264532|gb|ACS89214.1| indolepyruvate: ferredoxin oxidoreductase, alpha subunit [Thermococcus sibiricus MM 739] Length = 646 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 25/78 (32%), Gaps = 9/78 (11%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R Y E++C C++C AI + + ++ C CG Sbjct: 577 RRGEKWPIYYVNEDKCTGCRICINAYGCPAIYWDEEKKQA---------RVEPTMCWGCG 627 Query: 108 LCQEACPVDAIVEGPNFE 125 C + CP A E Sbjct: 628 GCAQVCPFGAFEPMKEGE 645 >gi|256829899|ref|YP_003158627.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfomicrobium baculatum DSM 4028] gi|256579075|gb|ACU90211.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfomicrobium baculatum DSM 4028] Length = 427 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 2/62 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ C C C + CP +A++I S R+ R D C+ CG+C ACP + Sbjct: 289 DEDLCNGCGKCASACPVEAMSIVSANDPRQPKRKKARVD--ENICLGCGVCVRACPEKTL 346 Query: 119 VE 120 Sbjct: 347 SL 348 >gi|269926643|ref|YP_003323266.1| molybdopterin oxidoreductase [Thermobaculum terrenum ATCC BAA-798] gi|269790303|gb|ACZ42444.1| molybdopterin oxidoreductase [Thermobaculum terrenum ATCC BAA-798] Length = 879 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 3/71 (4%) Query: 60 EERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVR-YDIDMIKCIYCGLCQEACPVD 116 +RC+ C C +C A + R D+ C+ CGLC + CPV Sbjct: 154 RDRCVLCGRCVRVCDELVGATALSWAQRGFRSYIDAAFGEDLKKSPCVSCGLCIQVCPVG 213 Query: 117 AIVEGPNFEFA 127 A++ + A Sbjct: 214 ALLNTSYHDTA 224 >gi|217076475|ref|YP_002334191.1| dihydroorotate dehydrogenase family protein [Thermosipho africanus TCF52B] gi|217036328|gb|ACJ74850.1| dihydroorotate dehydrogenase family protein [Thermosipho africanus TCF52B] Length = 360 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 12/60 (20%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+C CK+CE +CP AITI+ + +D KC CGLC+ CPV AI Sbjct: 309 DHEKCTLCKICEKVCPYFAITID------------TKVHVDPNKCFGCGLCESRCPVKAI 356 >gi|161614124|ref|YP_001588089.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|189043393|sp|A9N025|RNFC_SALPB RecName: Full=Electron transport complex protein rnfC gi|161363488|gb|ABX67256.1| hypothetical protein SPAB_01863 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 735 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 37/107 (34%), Gaps = 3/107 (2%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + + CI CG C CP Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 I F + +++R R+E+ R + + R Sbjct: 429 NIPLVQYFRQEKAEINAIRLEEKRAAEAKARFEARQAR-LEREKAVR 474 >gi|78356857|ref|YP_388306.1| glutamate synthase (NADPH) GltB2 subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219262|gb|ABB38611.1| glutamate synthase (NADPH) GltB2 subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 507 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 12/80 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + RCI C++C C +A + + R D KC C C CP + Sbjct: 18 DDSRCINCEVCVRQCSYEAHYWDDTRQ---------RVSFDSSKCTGCHRCAAQCPTSCL 68 Query: 119 VEGPNFEFATETRQELYYDK 138 N +E R+ ++ Sbjct: 69 TIRRN---PSEFRENAFWTP 85 >gi|11499973|ref|NP_071219.1| acetyl-CoA decarbonylase/synthase complex subunit alpha [Archaeoglobus fulgidus DSM 4304] gi|38502847|sp|O30274|ACDA2_ARCFU RecName: Full=Acetyl-CoA decarbonylase/synthase complex subunit alpha 2; Short=ACDS complex subunit alpha 2; AltName: Full=ACDS complex carbon monoxide dehydrogenase 2; Short=ACDS CODH 2 gi|2650695|gb|AAB91266.1| acetyl-CoA decarbonylase/synthase, subunit alpha (cdhA-2) [Archaeoglobus fulgidus DSM 4304] Length = 798 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 26/68 (38%), Gaps = 3/68 (4%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C C CP E+ +G R + + + CI CG C++ CP I Sbjct: 405 CTQCGNCTIACPQGIRIGEAMEAAENGDR--SKLEKEWDVCIACGRCEQVCPKG-IPIID 461 Query: 123 NFEFATET 130 + +A Sbjct: 462 MYNYAAWN 469 >gi|284162651|ref|YP_003401274.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Archaeoglobus profundus DSM 5631] gi|294862439|sp|P84626|HDLA_ARCPA RecName: Full=Heterodisulfide reductase subunit A-like protein gi|284012648|gb|ADB58601.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Archaeoglobus profundus DSM 5631] Length = 701 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 7/63 (11%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E+C C +C +CP AIT+ ++R +I+ C CG+C ACP AI Sbjct: 623 DKEKCSGCGICVPLCPYGAITMTK-------YNESMRAEINPALCKGCGVCAAACPSKAI 675 Query: 119 VEG 121 Sbjct: 676 KLH 678 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 11/29 (37%), Positives = 14/29 (48%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 ++D KC CG+C CP AI E Sbjct: 621 EVDKEKCSGCGICVPLCPYGAITMTKYNE 649 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 29/105 (27%), Gaps = 28/105 (26%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES---------GPRCHDGTRRTVRY 96 F+ + ++ + C C C +CP +A + + Sbjct: 231 NFKVKVRKKQTWVDWDLCTGCGACTDVCPPKARVPDEFNEGLSKRGAIYIQFPQAVPKKA 290 Query: 97 DIDMIKCIYCGL-------------------CQEACPVDAIVEGP 122 ID+ CI CG C++ CP A Sbjct: 291 VIDIDACIECGGRKFGTEPRKTKDGKPILAPCEKVCPTGAADRTK 335 >gi|260575576|ref|ZP_05843574.1| dihydroorotate dehydrogenase family protein [Rhodobacter sp. SW2] gi|259022219|gb|EEW25517.1| dihydroorotate dehydrogenase family protein [Rhodobacter sp. SW2] Length = 432 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 8/78 (10%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 +F + + + + CI C C C E + + C+ Sbjct: 330 QFLNLNYVTKAQIDQTSCIKCGRCHIAC-------EDTSHQAIAVSPERVFTVKDEDCVA 382 Query: 106 CGLCQEACPV-DAIVEGP 122 C LC + CPV + I P Sbjct: 383 CNLCVDVCPVENCITMVP 400 >gi|269122058|ref|YP_003310235.1| hydrogenase large subunit domain protein [Sebaldella termitidis ATCC 33386] gi|268615936|gb|ACZ10304.1| hydrogenase large subunit domain protein [Sebaldella termitidis ATCC 33386] Length = 488 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 26/68 (38%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110 ++ C C C A CP AI P + D ID KCI CGLC Sbjct: 129 YIDKQLCKKCGKCVASCPYHAIVDIERPCKKSCPVDAIEIDENDIAIIDSTKCINCGLCI 188 Query: 111 EACPVDAI 118 CP AI Sbjct: 189 NNCPFGAI 196 >gi|258406484|ref|YP_003199226.1| nitroreductase [Desulfohalobium retbaense DSM 5692] gi|257798711|gb|ACV69648.1| nitroreductase [Desulfohalobium retbaense DSM 5692] Length = 273 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 11/66 (16%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + + E+RCI C C A CPA I++++G +I +CI C C Sbjct: 1 MLNFRIDEDRCIQCGECAADCPAMCISLDNG-----------LPEIHEKRCIRCQHCLAV 49 Query: 113 CPVDAI 118 CP A+ Sbjct: 50 CPTAAL 55 Score = 37.0 bits (84), Expect = 0.81, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 15/39 (38%) Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 + + ID +CI CG C CP I E R Sbjct: 1 MLNFRIDEDRCIQCGECAADCPAMCISLDNGLPEIHEKR 39 >gi|242280739|ref|YP_002992868.1| glutamate synthase alpha subunit domain protein [Desulfovibrio salexigens DSM 2638] gi|242123633|gb|ACS81329.1| glutamate synthase alpha subunit domain protein [Desulfovibrio salexigens DSM 2638] Length = 775 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 27/73 (36%), Gaps = 6/73 (8%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 F+ + + C C LCE +CP AI+ + G + D Sbjct: 696 PRLTHFKDVQECAQECSSCGSCRDCGLCETVCPQAAISRKGGE------GKDFEMVCDSE 749 Query: 102 KCIYCGLCQEACP 114 KCI CG C CP Sbjct: 750 KCIGCGFCANVCP 762 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 4/32 (12%) Query: 103 CIYCGLCQEACPVDAIV----EGPNFEFATET 130 C CGLC+ CP AI EG +FE ++ Sbjct: 717 CRDCGLCETVCPQAAISRKGGEGKDFEMVCDS 748 >gi|163858985|ref|YP_001633283.1| iron-sulfur cluster-binding protein [Bordetella petrii DSM 12804] gi|163262713|emb|CAP45016.1| iron-sulfur cluster-binding protein [Bordetella petrii] Length = 698 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 9/79 (11%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C C + CPA A+ + C+ CGLC++ CP DAI Sbjct: 565 DAQACTLCMSCVSACPAHALQDNPQLPQLRFIEKN---------CVQCGLCEKTCPEDAI 615 Query: 119 VEGPNFEFATETRQELYYD 137 P + ++ + + Sbjct: 616 QLVPRLLLSERRKEAVVLN 634 Score = 40.5 bits (93), Expect = 0.083, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 9/58 (15%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 I C C +C A+AI ++ + +D C CG C CP A+ Sbjct: 314 IGCNACVDVCSAEAIRSDA---------HRQQIVVDPYLCAGCGACTTVCPSGAMAYT 362 >gi|333005860|gb|EGK25376.1| electron transport complex, RnfABCDGE type, B subunit [Shigella flexneri K-272] gi|333018896|gb|EGK38189.1| electron transport complex, RnfABCDGE type, B subunit [Shigella flexneri K-227] Length = 192 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI + + + C C LC + CP I Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVISDLCTGCNLCVDPCPTHCI 162 Query: 119 VEGPNFEFATETRQEL 134 P E + +L Sbjct: 163 SLQPVAETPDSWKWDL 178 Score = 35.5 bits (80), Expect = 2.4, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C C +ACPVDAI Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132 >gi|319638998|ref|ZP_07993756.1| ferredoxin [Neisseria mucosa C102] gi|317399902|gb|EFV80565.1| ferredoxin [Neisseria mucosa C102] Length = 282 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI S + + + +C CGLC CPVD I Sbjct: 76 DESACIGCTACIRACPVDAIMGASK----------LMHTVISDECTGCGLCVTPCPVDCI 125 Query: 119 VEGP 122 P Sbjct: 126 DMVP 129 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 13/22 (59%), Positives = 14/22 (63%) Query: 98 IDMIKCIYCGLCQEACPVDAIV 119 ID CI C C ACPVDAI+ Sbjct: 75 IDESACIGCTACIRACPVDAIM 96 >gi|302872484|ref|YP_003841120.1| dihydroorotate dehydrogenase family protein [Caldicellulosiruptor obsidiansis OB47] gi|302575343|gb|ADL43134.1| dihydroorotate dehydrogenase family protein [Caldicellulosiruptor obsidiansis OB47] Length = 381 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 12/67 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E+C +C C +C AI + G + C CGLC E CPV AI Sbjct: 326 NKEKCTSCGKCFTVCIYDAIEKDDGKFKVN------------QNCDGCGLCAELCPVKAI 373 Query: 119 VEGPNFE 125 E Sbjct: 374 SMVKRGE 380 >gi|255523967|ref|ZP_05390930.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Clostridium carboxidivorans P7] gi|296185205|ref|ZP_06853615.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium carboxidivorans P7] gi|255512398|gb|EET88675.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Clostridium carboxidivorans P7] gi|296050039|gb|EFG89463.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium carboxidivorans P7] Length = 1172 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 31/111 (27%), Gaps = 20/111 (18%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHD 88 + + E ++ ++CI C C +C A + Sbjct: 672 ITAWEKREISITVPKWNSDKCIQCNQCSYVCSHAVIRPTLLTCEELKNAPAGFETVPANG 731 Query: 89 GTRRTVRYDIDMIKCIYCGLCQEACP--VDAIVEGPNFEFATETRQELYYD 137 I C CG+C +CP AI P E R + D Sbjct: 732 FKNMQYHLAISAQDCTGCGICVVSCPAKEKAIDMNPL----AENRDKYITD 778 >gi|229829818|ref|ZP_04455887.1| hypothetical protein GCWU000342_01916 [Shuttleworthia satelles DSM 14600] gi|229791807|gb|EEP27921.1| hypothetical protein GCWU000342_01916 [Shuttleworthia satelles DSM 14600] Length = 219 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 35/84 (41%), Gaps = 13/84 (15%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 P E+ S F G + + CI C C A+CP I +S P Sbjct: 146 KKPIERA--SFTFGGAEKKAKGYFITDACIGCGSCAAVCPQNCIVTDSIP---------- 193 Query: 95 RYDIDMIKCIYCGLCQEACPVDAI 118 Y I+ C++CG C ACPV A+ Sbjct: 194 -YIIEQEHCLHCGNCLTACPVGAV 216 >gi|239618161|ref|YP_002941483.1| Ferredoxin hydrogenase [Kosmotoga olearia TBF 19.5.1] gi|239506992|gb|ACR80479.1| Ferredoxin hydrogenase [Kosmotoga olearia TBF 19.5.1] Length = 478 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 28/69 (40%), Gaps = 6/69 (8%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112 E+C+ C LC CP AI P D ID KC+ CG C A Sbjct: 151 DSEKCVGCGLCAKNCPYGAIIKIQRPCVSACAVGATYSDENGFVLIDDEKCVQCGECAVA 210 Query: 113 CPVDAIVEG 121 CP AIVE Sbjct: 211 CPFGAIVES 219 Score = 39.3 bits (90), Expect = 0.16, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 26/64 (40%), Gaps = 13/64 (20%) Query: 57 PNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + + C C K C CP AI I G ID KC+ CGLC + CP Sbjct: 118 YHITDMCRNCSAKYCINSCPRNAIPIVDGK-----------PKIDSEKCVGCGLCAKNCP 166 Query: 115 VDAI 118 AI Sbjct: 167 YGAI 170 >gi|163857881|ref|YP_001632179.1| ferredoxin-NADP oxidoreductase [Bordetella petrii DSM 12804] gi|163261609|emb|CAP43911.1| ferredoxin-NADP oxidoreductase [Bordetella petrii] Length = 416 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 11/69 (15%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 L+++ E CI C CE CP AIT + Y +D C C C Sbjct: 7 PEVLKQHLIDPEICIRCNTCEETCPIDAITHDGN-----------NYVVDPDICNGCMAC 55 Query: 110 QEACPVDAI 118 CP +I Sbjct: 56 VPPCPTGSI 64 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%) Query: 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI-VEGPNF 124 ++ ID CI C C+E CP+DAI +G N+ Sbjct: 1 MNAPLPPEVLKQHLIDPEICIRCNTCEETCPIDAITHDGNNY 42 >gi|160936128|ref|ZP_02083501.1| hypothetical protein CLOBOL_01024 [Clostridium bolteae ATCC BAA-613] gi|158440938|gb|EDP18662.1| hypothetical protein CLOBOL_01024 [Clostridium bolteae ATCC BAA-613] Length = 574 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 14/94 (14%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 +FF+ + + ++ AL + ++C C LC CPA AI Sbjct: 493 HFFRDEYEAHIKEKRCPAGVC----KALLSFNIDRDKCRGCTLCARNCPAGAIVGS---- 544 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + ID KCI CG C E C AI Sbjct: 545 ------VKNPHVIDQNKCIKCGACMEKCKFGAIY 572 >gi|154497075|ref|ZP_02035771.1| hypothetical protein BACCAP_01368 [Bacteroides capillosus ATCC 29799] gi|150273474|gb|EDN00602.1| hypothetical protein BACCAP_01368 [Bacteroides capillosus ATCC 29799] Length = 454 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 25/84 (29%), Gaps = 4/84 (4%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGEER---CIACKLCEAICPAQAITIESGPRCHDGT 90 I P G AL + + CI C C CP + E Sbjct: 345 IALPDLDFPLLWNNNGFVALNQKDAAKPATTACIRCGRCVDHCPMNLMAFEISKAYEQRD 404 Query: 91 RRTVRYDIDMIKCIYCGLCQEACP 114 +R I CI CG C CP Sbjct: 405 VEWLR-SIRADLCIECGCCSYVCP 427 >gi|312879492|ref|ZP_07739292.1| glycyl-radical enzyme activating protein family [Aminomonas paucivorans DSM 12260] gi|310782783|gb|EFQ23181.1| glycyl-radical enzyme activating protein family [Aminomonas paucivorans DSM 12260] Length = 301 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 16/82 (19%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 +RCI C C CP +A++ + +D+ +C+ CG+C CP A+ Sbjct: 53 DRCIGCGRCVESCPHKALSFVNDGVH-----------VDLSRCVGCGVCASVCPSLALEL 101 Query: 121 G----PNFEFATETRQE-LYYD 137 E E R++ L+YD Sbjct: 102 VGRTLTVPELVAEARKDELFYD 123 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 4/71 (5%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 +++Y + I CP + R D +CI CG C E+ Sbjct: 9 IKKYSIHDGPGIRTTFHLKGCPLSCWWCHNPESQSLLPVVLYRKD----RCIGCGRCVES 64 Query: 113 CPVDAIVEGPN 123 CP A+ + Sbjct: 65 CPHKALSFVND 75 >gi|291518800|emb|CBK74021.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Butyrivibrio fibrisolvens 16/4] Length = 289 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 38/112 (33%), Gaps = 22/112 (19%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI+C +C C A+ +E G ID KC C C ++CP DA P Sbjct: 167 CISCGVCVKACRESALQMEDGKV-----------TIDRSKCNNCARCVKSCPTDAWEGTP 215 Query: 123 NFEFAT--------ETRQEL---YYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + + +EL DKE L D N +R Sbjct: 216 GYIVSFGGTFGNKIYKAEELVPIIRDKETLFRVTDAAIEYFEANAKPSERFR 267 Score = 35.1 bits (79), Expect = 3.0, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 15/45 (33%) Query: 78 ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 G + + + CI CG+C +AC A+ Sbjct: 142 NNCLKAEENDVGIKGGMTVEYKEDACISCGVCVKACRESALQMED 186 >gi|262274543|ref|ZP_06052354.1| electron transport complex protein RnfC [Grimontia hollisae CIP 101886] gi|262221106|gb|EEY72420.1| electron transport complex protein RnfC [Grimontia hollisae CIP 101886] Length = 690 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 45/134 (33%), Gaps = 5/134 (3%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYP--NGEERCIACKLCEAICPAQAITIESGPRCHDG 89 TI +P + + R GE CI C C CPA + + Sbjct: 346 YTIPHPNVPVTKVTNCILVPSRREITPSEGEVACIRCSACAEACPAS-LLPQQLQWYAKD 404 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWE 149 + ++ CI CG C CP I + A + +++ +R+E Sbjct: 405 QDFDKCEEYNLFDCIECGACAYVCP-SEIPLVQYYRQAKSEIRTRNAEQQAAERAKERFE 463 Query: 150 SEIVRNIVTDSPYR 163 ++ R + D R Sbjct: 464 AKKAR-MERDKKAR 476 >gi|257452331|ref|ZP_05617630.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. 3_1_5R] gi|317058874|ref|ZP_07923359.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. 3_1_5R] gi|313684550|gb|EFS21385.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. 3_1_5R] Length = 1192 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 40/122 (32%), Gaps = 22/122 (18%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI----ESGPRCHDGTRRT 93 FE G+++ RG +CI C C +CP I E T Sbjct: 676 FENGTSAFEKRGVAVDVPLW-DSTKCIQCNQCSYVCPHAVIRPFLVSEEEKAASPVEFAT 734 Query: 94 V------------RYDIDMIKCIYCGLCQEACPVD--AIVEGPN---FEFATETRQELYY 136 + R + + C+ CG C CP AI P + + + + + Sbjct: 735 LKAMGKGLDGLTYRIQVSPLDCVGCGSCVNVCPAPGKAITMQPIATSIDAEEDKKADYLF 794 Query: 137 DK 138 +K Sbjct: 795 NK 796 >gi|227113510|ref|ZP_03827166.1| pyruvate-flavodoxin oxidoreductase [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 1177 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 24/143 (16%), Positives = 34/143 (23%), Gaps = 25/143 (17%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P T + + A + C C C A C Sbjct: 646 MLAGLGDTL------PVSALPPDGTWPTGTTKWEKRNIAEEIPLWQPQLCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPVDA 117 P AI + + + C C LC E CP Sbjct: 700 PHSAIRAKVVQPDAMEHAPASLQSLDVKARDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 118 IVEGPNFEFATETR-QELYYDKE 139 E+R L +KE Sbjct: 760 RQNPEIKAINMESRLDNLTAEKE 782 >gi|160893746|ref|ZP_02074530.1| hypothetical protein CLOL250_01300 [Clostridium sp. L2-50] gi|156864731|gb|EDO58162.1| hypothetical protein CLOL250_01300 [Clostridium sp. L2-50] Length = 661 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 27/69 (39%), Gaps = 10/69 (14%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 AL RY E C C C CP AIT E + ID KCI CG C Sbjct: 600 KALVRYKIDPEACKGCSKCARNCPVGAITGEIRKP----------FVIDTAKCIKCGACI 649 Query: 111 EACPVDAIV 119 + C A+ Sbjct: 650 DNCAFHAVY 658 Score = 37.4 bits (85), Expect = 0.60, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 20/62 (32%), Gaps = 8/62 (12%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 + + VRY ID C C C CPV AI E R+ D Sbjct: 588 HVVDKRCRTGNCKALVRYKIDPEACKGCSKCARNCPVGAI--------TGEIRKPFVIDT 639 Query: 139 ER 140 + Sbjct: 640 AK 641 >gi|121534126|ref|ZP_01665951.1| NADH dehydrogenase (quinone) [Thermosinus carboxydivorans Nor1] gi|121307229|gb|EAX48146.1| NADH dehydrogenase (quinone) [Thermosinus carboxydivorans Nor1] Length = 596 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 28/59 (47%), Gaps = 10/59 (16%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C LC+ CP +AI+ E R I+ KCI CG C CP AI++G Sbjct: 548 CKGCGLCKKACPVEAISGEIKGRHS----------INQAKCIKCGACMAKCPFKAIIKG 596 Score = 37.4 bits (85), Expect = 0.65, Method: Composition-based stats. Identities = 14/39 (35%), Positives = 19/39 (48%) Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + RC G + C CGLC++ACPV+AI Sbjct: 525 HINDKRCPAGVCAKLSGYQITELCKGCGLCKKACPVEAI 563 >gi|82776743|ref|YP_403092.1| putative oxidoreductase, Fe-S subunit [Shigella dysenteriae Sd197] gi|309788912|ref|ZP_07683507.1| pyruvate:ferredoxin oxidoreductase [Shigella dysenteriae 1617] gi|81240891|gb|ABB61601.1| putative oxidoreductase, Fe-S subunit [Shigella dysenteriae Sd197] gi|308923183|gb|EFP68695.1| pyruvate:ferredoxin oxidoreductase [Shigella dysenteriae 1617] Length = 1174 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDTL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|15642791|ref|NP_227832.1| pyruvate ferredoxin oxidoreductase, delta subunit [Thermotoga maritima MSB8] gi|4980500|gb|AAD35110.1|AE001690_4 pyruvate ferredoxin oxidoreductase, delta subunit [Thermotoga maritima MSB8] Length = 101 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 35/92 (38%), Gaps = 10/92 (10%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 + G+ G + R +E+CI C C CP QAI E G Sbjct: 18 DKPGTAREYKTGAWRVMRPILHKEKCIDCMFCWLYCPDQAIIQEGGIMKGF--------- 68 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 + C CGLC CP AI P EF +E Sbjct: 69 -NYDYCKGCGLCANVCPKQAIEMRPETEFLSE 99 >gi|45359186|ref|NP_988743.1| ferredoxin [Methanococcus maripaludis S2] gi|45048061|emb|CAF31179.1| ferredoxin [Methanococcus maripaludis S2] Length = 170 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 2/59 (3%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTV--RYDIDMIKCIYCGLCQEACPVDAIV 119 CI C C+ CP AI + + ID KCIYC C + CPV A+ Sbjct: 52 CIGCGGCKNACPTNAIEMIPVEPVKITETYSKEAIPKIDYDKCIYCLYCHDFCPVFALF 110 Score = 37.8 bits (86), Expect = 0.51, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 14/25 (56%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 + CI CG C+ ACP +AI P Sbjct: 47 VFSEICIGCGGCKNACPTNAIEMIP 71 >gi|313201532|ref|YP_004040190.1| RnfABCDGE type electron transport complex subunit B [Methylovorus sp. MP688] gi|312440848|gb|ADQ84954.1| electron transport complex, RnfABCDGE type, B subunit [Methylovorus sp. MP688] Length = 280 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 30/81 (37%), Gaps = 10/81 (12%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 +P+ + + E+ CI C LC CP AI S + + Sbjct: 80 PLNPQHGVQKPKQVAFIDEQTCIGCTLCIQACPVDAILGASKQ----------MHTVIAD 129 Query: 102 KCIYCGLCQEACPVDAIVEGP 122 +C C LC CPVD I P Sbjct: 130 ECTGCELCIAPCPVDCITMEP 150 >gi|269102486|ref|ZP_06155183.1| anaerobic sulfite reductase subunit C [Photobacterium damselae subsp. damselae CIP 102761] gi|268162384|gb|EEZ40880.1| anaerobic sulfite reductase subunit C [Photobacterium damselae subsp. damselae CIP 102761] Length = 336 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 28/87 (32%), Gaps = 8/87 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + + G + + ERCI C C C A+ S Sbjct: 153 CPNDCAKANMADFGVLGVAKMHFNAERCIGCGACVRACEHHAVGCLSLKNGKAIK----- 207 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGP 122 + KCI CG C ACP A P Sbjct: 208 ---EESKCIGCGECVLACPTLAWQRDP 231 Score = 35.1 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 11/52 (21%), Positives = 16/52 (30%), Gaps = 1/52 (1%) Query: 68 LCEAICPAQAITIESGPRC-HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 I A + G + + +CI CG C AC A+ Sbjct: 144 YHLKIVLAGCPNDCAKANMADFGVLGVAKMHFNAERCIGCGACVRACEHHAV 195 >gi|260892247|ref|YP_003238344.1| NADH dehydrogenase (quinone) [Ammonifex degensii KC4] gi|260864388|gb|ACX51494.1| NADH dehydrogenase (quinone) [Ammonifex degensii KC4] Length = 629 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 17/98 (17%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 ++Y F+ + + ++ + + E C+ C C CP AI Sbjct: 533 TIKY-FREEYEAHIREKRCPARTCTKVGKYVI-----GEDCVQCGWCRDTCPHGAI---- 582 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + + I+ C CG C CPV AI Sbjct: 583 -------LEKREGFYIEPDLCQRCGACLGVCPVGAIYL 613 Score = 34.7 bits (78), Expect = 4.0, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 10/61 (16%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 I + +Y I C+ CG C++ CP AI+ E R+ Y + Sbjct: 544 HIREKRCPARTCTKVGKYVIGED-CVQCGWCRDTCPHGAIL---------EKREGFYIEP 593 Query: 139 E 139 + Sbjct: 594 D 594 >gi|297569257|ref|YP_003690601.1| Electron transfer flavoprotein alpha/beta-subunit [Desulfurivibrio alkaliphilus AHT2] gi|296925172|gb|ADH85982.1| Electron transfer flavoprotein alpha/beta-subunit [Desulfurivibrio alkaliphilus AHT2] Length = 402 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 22/64 (34%), Gaps = 12/64 (18%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 E CI C LCE C AI +E G C CG C E C Sbjct: 1 MLKIDAEACIGCGLCEDACTFGAIQVEDGLAVVG------------DNCTLCGACVEVCE 48 Query: 115 VDAI 118 V A+ Sbjct: 49 VGAL 52 >gi|322420257|ref|YP_004199480.1| NADH dehydrogenase (quinone) [Geobacter sp. M18] gi|320126644|gb|ADW14204.1| NADH dehydrogenase (quinone) [Geobacter sp. M18] Length = 616 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 33/100 (33%), Gaps = 23/100 (23%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEH----ALRRYPNGEERCIACKLCEAICPAQAI 78 LR F P E + R L Y E+C+ C C +CP I Sbjct: 533 TLRNF---------PEEYQAHIADKRCPALRCAELVCYSIDAEKCVGCTRCARVCPVDCI 583 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + E ID CI CG C +AC A+ Sbjct: 584 SGEVKKPHL----------IDQRGCIRCGECLKACNFAAV 613 >gi|253576869|ref|ZP_04854194.1| NADH dehydrogenase [Paenibacillus sp. oral taxon 786 str. D14] gi|251843736|gb|EES71759.1| NADH dehydrogenase [Paenibacillus sp. oral taxon 786 str. D14] Length = 628 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 15/99 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 L+Y F+ + + +K +L Y E+C C LC CPA+AI+ E Sbjct: 545 TLKY-FREEYIAHVVDKKCPAGVC----RSLITYTIDPEKCRGCTLCARKCPAEAISGEM 599 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 + ID CI CG+C ++C +AI + Sbjct: 600 KEP----------HVIDPQLCIKCGICFDSCKFEAIYKS 628 >gi|227485075|ref|ZP_03915391.1| pyruvate synthase [Anaerococcus lactolyticus ATCC 51172] gi|227236908|gb|EEI86923.1| pyruvate synthase [Anaerococcus lactolyticus ATCC 51172] Length = 1174 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 31/102 (30%), Gaps = 19/102 (18%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ----------------AITIES 82 E +T RG AL ++CI C C +CP A Sbjct: 665 ETATTQYEKRG-VALNVPEWQIDKCIQCNQCSFVCPHAVIRPFLVTEEEKAKAPAGFATK 723 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD--AIVEGP 122 R I + C CG C + CP A++ P Sbjct: 724 KAIGKGLEGYDFRIQISPLDCTGCGNCADVCPAPQKALIMKP 765 >gi|139437985|ref|ZP_01771538.1| Hypothetical protein COLAER_00525 [Collinsella aerofaciens ATCC 25986] gi|133776182|gb|EBA40002.1| Hypothetical protein COLAER_00525 [Collinsella aerofaciens ATCC 25986] Length = 401 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 8/65 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C C + I ++ R R CI CG C +ACPV+AI Sbjct: 7 DSEACIGCGRCVRACASDGIVVKGE--------RPNRCARVTDGCILCGGCVDACPVNAI 58 Query: 119 VEGPN 123 + Sbjct: 59 SIERD 63 >gi|33112418|sp|Q94IN5|PNO_EUGGR RecName: Full=Pyruvate dehydrogenase [NADP+], mitochondrial; AltName: Full=Aquacobalamin reductase [NADPH]; AltName: Full=EgPNOmt; AltName: Full=Pyruvate:NADP+ oxidoreductase; Flags: Precursor gi|13872738|emb|CAC37628.1| pyruvate:NADP+ oxidoreductase [Euglena gracilis] Length = 1803 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 30/118 (25%), Gaps = 17/118 (14%) Query: 31 KTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI---------- 78 ++ P + + A C C C +CP I Sbjct: 722 PVSVMTPGGTFPVGTTQYAKRAIAAFIPQWIPANCTQCNYCSYVCPHATIRPFVLTDQEV 781 Query: 79 -----TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 + + D R + C C +C E CP DA+ F R Sbjct: 782 QLAPESFVTRKAKGDYQGMNFRIQVAPEDCTGCQVCVETCPDDALEMTDAFTATPVQR 839 >gi|9909124|dbj|BAB12024.1| pyruvate: NADP+ oxidoreductase [Euglena gracilis] Length = 1803 Score = 49.3 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 20/118 (16%), Positives = 30/118 (25%), Gaps = 17/118 (14%) Query: 31 KTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI---------- 78 ++ P + + A C C C +CP I Sbjct: 722 PVSVMTPGGTFPVGTTQYAKRAIAAFIPQWIPANCTQCNYCSYVCPHATIRPFVLTDQEV 781 Query: 79 -----TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 + + D R + C C +C E CP DA+ F R Sbjct: 782 QLAPESFVTRKAKGDYQGMNFRIQVAPEDCTGCQVCVETCPDDALEMTDAFTATPVQR 839 >gi|302348244|ref|YP_003815882.1| putative ATPase RIL [Acidilobus saccharovorans 345-15] gi|302328656|gb|ADL18851.1| putative ATPase RIL [Acidilobus saccharovorans 345-15] Length = 601 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 27/74 (36%), Gaps = 3/74 (4%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRC--HDGTRRTVRYDIDMIKCIYCGLCQE 111 R + C K C C + +S T+ + I CI CGLC + Sbjct: 3 RIAVIDSDECKP-KRCSYQCISVCPINKSKKDVAIEADTKARAKPVIHEDVCIGCGLCVK 61 Query: 112 ACPVDAIVEGPNFE 125 ACP DAI E Sbjct: 62 ACPFDAIAIVNLPE 75 >gi|300936048|ref|ZP_07150995.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli MS 21-1] gi|300458774|gb|EFK22267.1| electron transport complex, RnfABCDGE type, B subunit [Escherichia coli MS 21-1] Length = 192 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI + + + C C LC + CP I Sbjct: 113 DENNCIGCTKCIQSCPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTHCI 162 Query: 119 VEGPNFEFATETRQEL 134 P E + +L Sbjct: 163 SLQPVAETPDSWKWDL 178 Score = 34.3 bits (77), Expect = 5.0, Method: Composition-based stats. Identities = 12/21 (57%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C C ++CPVDAI Sbjct: 112 IDENNCIGCTKCIQSCPVDAI 132 >gi|291549368|emb|CBL25630.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Ruminococcus torques L2-14] Length = 622 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 10/67 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 LR + E+C C C CP AIT + + ID KCI CG C + Sbjct: 564 LRVFKIDPEKCKGCSKCAKNCPVNAITG----------KIKSPFTIDNSKCIKCGSCIDN 613 Query: 113 CPVDAIV 119 CP A+ Sbjct: 614 CPFGAVY 620 >gi|258542561|ref|YP_003187994.1| glutamate synthase (NADPH) small subunit [Acetobacter pasteurianus IFO 3283-01] gi|256633639|dbj|BAH99614.1| glutamate synthase [NADPH] small subunit [Acetobacter pasteurianus IFO 3283-01] gi|256636698|dbj|BAI02667.1| glutamate synthase [NADPH] small subunit [Acetobacter pasteurianus IFO 3283-03] gi|256639751|dbj|BAI05713.1| glutamate synthase [NADPH] small subunit [Acetobacter pasteurianus IFO 3283-07] gi|256642807|dbj|BAI08762.1| glutamate synthase [NADPH] small subunit [Acetobacter pasteurianus IFO 3283-22] gi|256645862|dbj|BAI11810.1| glutamate synthase [NADPH] small subunit [Acetobacter pasteurianus IFO 3283-26] gi|256648915|dbj|BAI14856.1| glutamate synthase [NADPH] small subunit [Acetobacter pasteurianus IFO 3283-32] gi|256651902|dbj|BAI17836.1| glutamate synthase [NADPH] small subunit [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654959|dbj|BAI20886.1| glutamate synthase [NADPH] small subunit [Acetobacter pasteurianus IFO 3283-12] Length = 584 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 26/78 (33%), Gaps = 3/78 (3%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 RC++C C A E + Y + M C C +C E CP Sbjct: 497 RYEAGRCLSCGNCFECDNCYASCPEQAITRLGPGKG---YAVAMDMCTGCAVCAEQCPCH 553 Query: 117 AIVEGPNFEFATETRQEL 134 AI P AT + L Sbjct: 554 AIEMDPEPVEATPAKGSL 571 >gi|251773162|gb|EES53715.1| NADH dehydrogenase (quinone) F subunit [Leptospirillum ferrodiazotrophum] Length = 617 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 10/66 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L +Y EE C C LCE +CP ++T + G H I++ CI C C +A Sbjct: 561 LIKYVVIEEDCTTCGLCEPVCPTGSVTWDKGEVAH----------INLETCIRCKACVDA 610 Query: 113 CPVDAI 118 C AI Sbjct: 611 CKFRAI 616 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 15/44 (34%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 I ++Y + C CGLC+ CP ++ Sbjct: 547 HIRDKHCPGTVCANLIKYVVIEEDCTTCGLCEPVCPTGSVTWDK 590 >gi|257063697|ref|YP_003143369.1| 2-oxoacid:ferredoxin oxidoreductase, delta subunit [Slackia heliotrinireducens DSM 20476] gi|256791350|gb|ACV22020.1| 2-oxoacid:ferredoxin oxidoreductase, delta subunit [Slackia heliotrinireducens DSM 20476] Length = 356 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 28/84 (33%), Gaps = 9/84 (10%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E P + + C++C C C + A ++S R Sbjct: 259 EAIEQLPEMAERVTMTVSFTDTDACVSCHDCTECCISGARALDSASGVVSYDVRY----- 313 Query: 99 DMIKCIYCGLCQEACPVDAIVEGP 122 CI CG C +ACPV AI Sbjct: 314 ----CIGCGACVDACPVAAITMID 333 Score = 34.3 bits (77), Expect = 5.6, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 9/48 (18%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 C+ C CP AI+ ++ ID C CGLC C Sbjct: 18 CRRCAIACPVGAISFDAETNGP---------VIDEKACTKCGLCMGVC 56 >gi|254513803|ref|ZP_05125864.1| electron transport complex protein RnfB [gamma proteobacterium NOR5-3] gi|219676046|gb|EED32411.1| electron transport complex protein RnfB [gamma proteobacterium NOR5-3] Length = 202 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 27/84 (32%), Gaps = 10/84 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E E EE CI C C CP AI + + + Sbjct: 97 EAPPLDAEHGAETETTVAFIIEEDCIGCTKCIQACPVDAIVGAAKQ----------MHTV 146 Query: 99 DMIKCIYCGLCQEACPVDAIVEGP 122 +C C LC + CPVD I P Sbjct: 147 IAAECTGCDLCVDPCPVDCIEMLP 170 >gi|188584742|ref|YP_001916287.1| formate dehydrogenase, alpha subunit [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349429|gb|ACB83699.1| formate dehydrogenase, alpha subunit [Natranaerobius thermophilus JW/NM-WN-LF] Length = 893 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 28/98 (28%), Positives = 38/98 (38%), Gaps = 10/98 (10%) Query: 35 NYPFEKGSTSPRFRGEHAL-------RRYPNGEERCIACKLCEAICPA-QAITIESGPRC 86 +Y +E G T RFRGE R ++CI C C +C Q Sbjct: 113 DYCYEYGVTESRFRGEVIEHEIDETSRFVERDLDKCILCGKCIRVCHEIQGSEAIDFMDR 172 Query: 87 HDGTRRTVRYDIDMIK--CIYCGLCQEACPVDAIVEGP 122 T+ YD + C+ CG C CPV A++ P Sbjct: 173 GFETKVATFYDKGLSDSPCVDCGNCINVCPVGALIPKP 210 >gi|217979113|ref|YP_002363260.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Methylocella silvestris BL2] gi|217504489|gb|ACK51898.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Methylocella silvestris BL2] Length = 1217 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 24/93 (25%), Gaps = 28/93 (30%) Query: 58 NGEERCIACKLCEAICPA---QAITIESGPRCHDGTRRTVRY-----------------D 97 + CI C C CP +A + + Sbjct: 705 WETDLCIQCGQCSIACPHSVIRARFYDEARLADPNEPAPPTFKSAPVNARGYPDSRFTLQ 764 Query: 98 IDMIKCIYCGLCQEACP--------VDAIVEGP 122 + C CG+C E CP AI GP Sbjct: 765 FYVEDCTGCGICVEVCPAHSPSRPGTKAINMGP 797 >gi|120405063|ref|YP_954892.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [Mycobacterium vanbaalenii PYR-1] gi|119957881|gb|ABM14886.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Mycobacterium vanbaalenii PYR-1] Length = 1193 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 32/104 (30%), Gaps = 26/104 (25%) Query: 58 NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY--DIDMI 101 + CI C C +CP A R+ + Sbjct: 686 WDPDTCIQCGNCGFVCPHSVIRSKFYDGSQLAGAPADFDSAPLDAVGLPGARFSLQVYTE 745 Query: 102 KCIYCGLCQEACP--------VDAIVEGP-NFEFATETRQELYY 136 C CGLC EACP AI GP ATE R+ + + Sbjct: 746 DCTGCGLCVEACPVVIPGPTATKAINLGPAEPRMATE-RENVRF 788 >gi|261379385|ref|ZP_05983958.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria subflava NJ9703] gi|284797832|gb|EFC53179.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria subflava NJ9703] Length = 283 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI S + + + +C CGLC CPVD I Sbjct: 77 DEAVCIGCTACIRACPVDAIMGASK----------LMHTVISDECTGCGLCVAPCPVDCI 126 Query: 119 VEGP 122 P Sbjct: 127 DMVP 130 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 13/22 (59%), Positives = 14/22 (63%) Query: 98 IDMIKCIYCGLCQEACPVDAIV 119 ID CI C C ACPVDAI+ Sbjct: 76 IDEAVCIGCTACIRACPVDAIM 97 >gi|114319976|ref|YP_741659.1| electron transport complex, RnfABCDGE type, B subunit [Alkalilimnicola ehrlichii MLHE-1] gi|123127335|sp|Q0AAG8|RNFB_ALHEH RecName: Full=Electron transport complex protein rnfB gi|114226370|gb|ABI56169.1| electron transport complex, RnfABCDGE type, B subunit [Alkalilimnicola ehrlichii MLHE-1] Length = 186 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 25/66 (37%), Gaps = 10/66 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C C CP AI + + + +C CGLC + CPVD Sbjct: 108 WVDEAVCIGCTRCIQACPVDAILGAAKQ----------MHTVLKGECTGCGLCVDPCPVD 157 Query: 117 AIVEGP 122 I P Sbjct: 158 CIHMVP 163 >gi|225387473|ref|ZP_03757237.1| hypothetical protein CLOSTASPAR_01226 [Clostridium asparagiforme DSM 15981] gi|225046403|gb|EEG56649.1| hypothetical protein CLOSTASPAR_01226 [Clostridium asparagiforme DSM 15981] Length = 643 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 1/66 (1%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-DIDMIKCIYCGLCQEACPV 115 + E C C CE +CP AI+ E+ G R T R ++ C CG C ACP Sbjct: 562 KSDERYCNGCSACEKVCPYGAISYENKEVFDHGIRETRRVAVVNTALCQGCGACTVACPS 621 Query: 116 DAIVEG 121 A+ Sbjct: 622 GAMDLQ 627 Score = 34.7 bits (78), Expect = 4.4, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 25/81 (30%), Gaps = 13/81 (16%) Query: 59 GEERCIACKLCEAICPAQAITIE--------SGPRCHDGTRRTVRYDIDMIKCIY----- 105 +C C +C CP++ E S ID CI Sbjct: 221 DMTKCTGCGVCSEKCPSKKTPSEFNRGLSTRSAIYTPFAQAIPNVPVIDREHCIKFKTGK 280 Query: 106 CGLCQEACPVDAIVEGPNFEF 126 CG+C++ C AI E Sbjct: 281 CGVCEKVCAAGAIDYKQQDEI 301 >gi|90412296|ref|ZP_01220301.1| pyridine nucleotide-disulphide oxidoreductase family protein [Photobacterium profundum 3TCK] gi|90326787|gb|EAS43180.1| pyridine nucleotide-disulphide oxidoreductase family protein [Photobacterium profundum 3TCK] Length = 550 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 18/65 (27%), Gaps = 2/65 (3%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 RC +C C + RY D KC C C CP A Sbjct: 477 YEATRCYSCGNC--FECDGCYGACPEEGAILKLGKGNRYKFDYDKCTGCQACMNQCPCHA 534 Query: 118 IVEGP 122 I P Sbjct: 535 IDMLP 539 >gi|307299220|ref|ZP_07579021.1| dihydroorotate dehydrogenase family protein [Thermotogales bacterium mesG1.Ag.4.2] gi|306915016|gb|EFN45402.1| dihydroorotate dehydrogenase family protein [Thermotogales bacterium mesG1.Ag.4.2] Length = 359 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 12/81 (14%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 E ++ + +R ++C C LC +CP A++++ + + Sbjct: 286 EEAVGSAKDQKESFTVRNPVIDHDKCTRCGLCVEVCPYFALSLQE------------KVE 333 Query: 98 IDMIKCIYCGLCQEACPVDAI 118 +D +C CGLC+ CPV AI Sbjct: 334 VDSAECFGCGLCESICPVAAI 354 Score = 41.6 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 13/28 (46%), Positives = 14/28 (50%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFE 125 ID KC CGLC E CP A+ E Sbjct: 306 IDHDKCTRCGLCVEVCPYFALSLQEKVE 333 >gi|303325741|ref|ZP_07356184.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Desulfovibrio sp. 3_1_syn3] gi|302863657|gb|EFL86588.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Desulfovibrio sp. 3_1_syn3] Length = 1178 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 30/144 (20%), Positives = 44/144 (30%), Gaps = 34/144 (23%) Query: 29 KAKTTINYP--FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA----------- 75 K + P F T+ + A+ CI C C +CP Sbjct: 651 KLPVSAMDPAGFVPLGTAACEKRGVAINIPEWQVANCIQCCQCSFVCPHAAIRPVLATEA 710 Query: 76 ---QAITIESGPRCHDGTRRTVRYDI--DMIKCIYCGLCQEACP--VDAIVEGP------ 122 A + +++ I C+ CG C + CP A+V P Sbjct: 711 ELEGAPAGFETKDAMGKELKGLKFRIQVYPEDCLGCGSCADICPAKEKALVMKPLEGQLD 770 Query: 123 ----NFEFATETRQELYYDKERLL 142 N EFA +E K+ LL Sbjct: 771 AQKANLEFA----EEHISLKDNLL 790 >gi|225017724|ref|ZP_03706916.1| hypothetical protein CLOSTMETH_01653 [Clostridium methylpentosum DSM 5476] gi|224949517|gb|EEG30726.1| hypothetical protein CLOSTMETH_01653 [Clostridium methylpentosum DSM 5476] Length = 263 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 29/83 (34%), Gaps = 11/83 (13%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P K ++ CI C+ CE CP AI +++ Sbjct: 189 PLSKPVVVICASQQNGKNTRAACTNGCIGCRKCEKTCPYDAIHVDN-----------FLA 237 Query: 97 DIDMIKCIYCGLCQEACPVDAIV 119 ID KC CG C E CPV I Sbjct: 238 RIDYEKCTACGKCVEVCPVSCIH 260 Score = 37.8 bits (86), Expect = 0.55, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 23/85 (27%), Gaps = 11/85 (12%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 +E T C+ C C A+ + G Sbjct: 116 YEYTGTPSCAGANKYYSGDGQCPYGCLGYGDCTHACIFDALHVIDG-----------VAY 164 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 +D KC CG C + CP I P Sbjct: 165 VDPEKCTGCGQCAQECPKGLIDIKP 189 >gi|297619793|ref|YP_003707898.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanococcus voltae A3] gi|297378770|gb|ADI36925.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus voltae A3] Length = 395 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 1/75 (1%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++C C C CP AI + + +R D + CI CG C CP A+ Sbjct: 266 DKCNYCGPCAIKCPTNAINLVNQKGLELPSRTKTDKDPEFRMCIRCGACVMKCPTGALKM 325 Query: 121 GPN-FEFATETRQEL 134 G E R E Sbjct: 326 GKITHEGKEYNRIEF 340 Score = 42.8 bits (99), Expect = 0.018, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 2/60 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++CI C +C CP AI +G + + + + CI C C E CP D I Sbjct: 157 DTDKCIYCTVCAQTCPWNAIY-VAGKKPSKRQKEIKSFTVTEE-CIGCEKCVEVCPGDMI 214 Score = 40.9 bits (94), Expect = 0.067, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 3/65 (4%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C C CP A+ + + + R + C CG C + CP + + Sbjct: 304 EFRMCIRCGACVMKCPTGALKM---GKITHEGKEYNRIEFSPALCNQCGECVDVCPQNTL 360 Query: 119 VEGPN 123 + Sbjct: 361 KLTGD 365 Score = 38.5 bits (88), Expect = 0.31, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 11/57 (19%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 C+ C C +CP AI+IE+ ID KCIYC +C + CP +AI Sbjct: 132 CVGCSECVPVCPVDAISIENELAV-----------IDTDKCIYCTVCAQTCPWNAIY 177 Score = 37.8 bits (86), Expect = 0.45, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 1/77 (1%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID-MIKCIYCGLCQEACP 114 +P + C+ C+ C CP I+I + + I C+ C C CP Sbjct: 84 FPYSKGHCVLCEKCVDACPIDIISIPGKIDKPEKEIAIPQEPIKVTDACVGCSECVPVCP 143 Query: 115 VDAIVEGPNFEFATETR 131 VDAI + Sbjct: 144 VDAISIENELAVIDTDK 160 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 11/69 (15%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C C C + CP A+ +G + KC+ CG C ACP Sbjct: 31 FKTCNLCFSCASACPTGALVENNGKLI-----------YNSSKCLKCGNCATACPTGIKK 79 Query: 120 EGPNFEFAT 128 F ++ Sbjct: 80 VDDRFPYSK 88 >gi|148379176|ref|YP_001253717.1| pyruvate-flavodoxin oxidoreductase [Clostridium botulinum A str. ATCC 3502] gi|153932884|ref|YP_001383553.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum A str. ATCC 19397] gi|153936760|ref|YP_001387102.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum A str. Hall] gi|148288660|emb|CAL82741.1| putative pyruvate-flavodoxin oxidoreductase [Clostridium botulinum A str. ATCC 3502] gi|152928928|gb|ABS34428.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum A str. ATCC 19397] gi|152932674|gb|ABS38173.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum A str. Hall] Length = 1172 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 40/126 (31%), Gaps = 24/126 (19%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------ITIESGPRCHDGTRRTV 94 G+TS RG + ++CI C C ICP E + Sbjct: 668 GTTSYEKRGIAVMIPEWQ-IDKCIQCNQCSYICPHSVIRAYLLNKDEKEKAPSTFETKKA 726 Query: 95 ----------RYDIDMIKCIYCGLCQEACPVD--AIVEGP---NFEFATETRQ--ELYYD 137 R I + C CG C + CP A++ E +E + Sbjct: 727 AGKGLEELGYRIQISPLDCTGCGNCADVCPAPGKALIMKNAEEQIEMQSENWEFGLNINT 786 Query: 138 KERLLN 143 KE L++ Sbjct: 787 KENLMD 792 >gi|123406266|ref|XP_001302760.1| Dihydroorotate dehydrogenase family protein [Trichomonas vaginalis G3] gi|123470791|ref|XP_001318599.1| Dihydroorotate dehydrogenase family protein [Trichomonas vaginalis G3] gi|121884080|gb|EAX89830.1| Dihydroorotate dehydrogenase family protein [Trichomonas vaginalis G3] gi|121901362|gb|EAY06376.1| Dihydroorotate dehydrogenase family protein [Trichomonas vaginalis G3] Length = 811 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 23/81 (28%), Gaps = 8/81 (9%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 K + + C+ C C C ++ ++ Sbjct: 725 KRVVQRESFDINWTLHAEIDDATCLQCGKCALSCRDN--------SVEAIHLVDGKWKVN 776 Query: 100 MIKCIYCGLCQEACPVDAIVE 120 +CI C LC CPV A+ Sbjct: 777 HDECIGCALCHSVCPVQAMHM 797 >gi|91787512|ref|YP_548464.1| benzoyl-CoA oxygenase, component A [Polaromonas sp. JS666] gi|91696737|gb|ABE43566.1| benzoyl-CoA oxygenase, component A [Polaromonas sp. JS666] Length = 426 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 32/68 (47%), Gaps = 11/68 (16%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 H ++++ E CI C CEAICP QAIT +S Y +D KC C C Sbjct: 7 HVIKQHLIDPEICIRCNTCEAICPVQAITHDS-----------RNYVVDAEKCNLCMACI 55 Query: 111 EACPVDAI 118 CP +I Sbjct: 56 SPCPTGSI 63 Score = 37.0 bits (84), Expect = 0.88, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 14/30 (46%) Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++ ID CI C C+ CPV AI Sbjct: 7 HVIKQHLIDPEICIRCNTCEAICPVQAITH 36 >gi|220932914|ref|YP_002509822.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Halothermothrix orenii H 168] gi|219994224|gb|ACL70827.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Halothermothrix orenii H 168] Length = 1179 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 29/90 (32%), Gaps = 18/90 (20%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITI------ESGPRCHDGTRRTV---------- 94 A+ + CI C C CP AI E+ + Sbjct: 679 IAINVPEWQIDNCIQCNQCAMACPHAAIRPFLLNEEEANKAPEGFETKPAIGKQLKGLQY 738 Query: 95 RYDIDMIKCIYCGLCQEACP--VDAIVEGP 122 R + + C CG+C E CP A+V P Sbjct: 739 RIQVSPLDCTGCGVCAEVCPAKEKALVMKP 768 >gi|332161837|ref|YP_004298414.1| electron transport complex protein RnfC [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325666067|gb|ADZ42711.1| electron transport complex protein RnfC [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 618 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 3/103 (2%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C LC CPA + + G + ++ CI CG C CP I Sbjct: 375 QSCIRCGLCVDACPAG-LLPQQLYWFSRGEEHEKARNHNIFDCIECGACAYVCP-SNIPL 432 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + + L + ER R+E++ R + + R Sbjct: 433 VQYYRQEKAEIRTLDQEAERAAQAKARFEAKQAR-LEREKIAR 474 >gi|318605660|emb|CBY27158.1| electron transport complex protein RnfC [Yersinia enterocolitica subsp. palearctica Y11] Length = 618 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 3/103 (2%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C LC CPA + + G + ++ CI CG C CP I Sbjct: 375 QSCIRCGLCVDACPAG-LLPQQLYWFSRGEEHEKARNHNIFDCIECGACAYVCP-SNIPL 432 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + + L + ER R+E++ R + + R Sbjct: 433 VQYYRQEKAEIRTLDQEAERAAQAKARFEAKQAR-LEREKIAR 474 >gi|311697015|gb|ADP99888.1| protein containing 4Fe-4S ferredoxin, iron-sulfur binding, subgroup domains [marine bacterium HP15] Length = 637 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 30/98 (30%), Gaps = 9/98 (9%) Query: 31 KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT 90 + T+ EK ++C C C ++CP A+ Sbjct: 461 RVTVAAMSEKIEEPIPLPKGAPYGAIEIDSDKCTLCLACVSLCPTGALGDHPD------- 513 Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 C+ CG+C+ CP AI P + + Sbjct: 514 --RPEVQFTENACVQCGICESTCPETAITLKPQLDVSK 549 Score = 42.0 bits (97), Expect = 0.030, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 18/55 (32%), Gaps = 11/55 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C +CP +AI ID C CG C CP A+ Sbjct: 269 CTRCLDVCPTEAIFSFGD-----------HIQIDSDICAGCGSCAAVCPTSAVTM 312 >gi|309790829|ref|ZP_07685373.1| hypothetical protein OSCT_1324 [Oscillochloris trichoides DG6] gi|308227116|gb|EFO80800.1| hypothetical protein OSCT_1324 [Oscillochloris trichoides DG6] Length = 439 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 11/86 (12%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + C C C +CP A+ I + G RR D C+ CG+C AC Sbjct: 288 WIATIDPQLCRGCGRCVPVCPVNALQIN---QSEVGGRRRRWAVRDADLCLGCGVCYAAC 344 Query: 114 PVDAIVEGPNFEFATETRQELYYDKE 139 A+ P R+ + E Sbjct: 345 RHGALTMQP--------RERRVFTPE 362 >gi|291563571|emb|CBL42387.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [butyrate-producing bacterium SS3/4] Length = 1178 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 30/93 (32%), Gaps = 19/93 (20%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQ-----AITIESGPRCHDGTR---------RT 93 RG N + CI C C +CP A+T E + GT+ Sbjct: 680 RGIAVNVPVWN-PDNCIQCNFCSYVCPHAVIRPVAMTEEEAAKAPAGTKTIPMTGMPEYK 738 Query: 94 VRYDIDMIKCIYCGLCQEACP----VDAIVEGP 122 I + C CG C CP A+ P Sbjct: 739 FAMTISALDCTGCGSCANVCPGKKGEKALTMVP 771 >gi|260778692|ref|ZP_05887584.1| iron-sulfur cluster-binding protein [Vibrio coralliilyticus ATCC BAA-450] gi|260604856|gb|EEX31151.1| iron-sulfur cluster-binding protein [Vibrio coralliilyticus ATCC BAA-450] Length = 553 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 9/75 (12%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + C C C A+CP++A+ + ++ C+ CGLC +ACP +A Sbjct: 415 CESKDCTLCMSCVAVCPSRALHTDG---------QSPSLKFVEQDCVQCGLCTKACPENA 465 Query: 118 IVEGPNFEFATETRQ 132 + P + RQ Sbjct: 466 LTMTPRMNWDAAARQ 480 Score = 40.5 bits (93), Expect = 0.090, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 6/54 (11%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 C+ C CPA A++ E + R +I+ C G C ACP +AI Sbjct: 186 CERCVDACPAGALSSEGSDKTGH------RIEINPYLCQGVGTCATACPTEAIH 233 >gi|260466533|ref|ZP_05812722.1| formate dehydrogenase, alpha subunit [Mesorhizobium opportunistum WSM2075] gi|259029682|gb|EEW30969.1| formate dehydrogenase, alpha subunit [Mesorhizobium opportunistum WSM2075] Length = 970 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T G + D +C+ CG C + Sbjct: 182 YFTYDPAQCIVCSRCVRACEEVQGTFALTIEGRGFESRMVAGMHEDFIASECVSCGACVQ 241 Query: 112 ACPVDAIVE 120 ACP DA+ E Sbjct: 242 ACPTDALRE 250 >gi|206901791|ref|YP_002251592.1| FdhB-II protein [Dictyoglomus thermophilum H-6-12] gi|206740894|gb|ACI19952.1| FdhB-II protein [Dictyoglomus thermophilum H-6-12] Length = 559 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 38/102 (37%), Gaps = 3/102 (2%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV 94 FE + RF ++ RC+ C+ C +C A E + Sbjct: 121 FEFPTYERRFPVDNTHDFIMMDHNRCVLCRRCVRVCSEVAGHFVLGEMERGIDTMIIADM 180 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 + C+ CGLC + CP AI++ + E + E+ Y Sbjct: 181 DVPLGNSSCVSCGLCAQVCPTGAIIDKRSSYLGREVQSEIIY 222 >gi|168206256|ref|ZP_02632261.1| nitroreductase family protein [Clostridium perfringens E str. JGS1987] gi|170662298|gb|EDT14981.1| nitroreductase family protein [Clostridium perfringens E str. JGS1987] Length = 272 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 15/91 (16%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 +CI C LC C I + G I CI CG C CP Sbjct: 1 MMNVDTSKCIGCTLCMQDCIVSDIEMVDGKAH-----------IKNESCIECGHCIAICP 49 Query: 115 VDAIVEGPNFEFA---TETRQELYYDKERLL 142 +A+ + +++ + ++ D +RLL Sbjct: 50 KEAVSDS-DYDMSKIQEYKKESFDIDSDRLL 79 >gi|110680105|ref|YP_683112.1| iron-sulfur cluster-binding protein, putative [Roseobacter denitrificans OCh 114] gi|109456221|gb|ABG32426.1| iron-sulfur cluster-binding protein, putative [Roseobacter denitrificans OCh 114] Length = 651 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 29/102 (28%), Gaps = 13/102 (12%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E L + C C C ++CP+ A+ + Sbjct: 483 EVLELPDASPYGAILV----DTDACTLCLSCVSLCPSGALGDNPD---------NPQLRF 529 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140 C+ CGLC CP AI P + + +E Sbjct: 530 QEDACLQCGLCSNICPEQAITLKPQLDLTDAAFTQKVMHEEE 571 Score = 38.2 bits (87), Expect = 0.42, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 11/53 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C +CP AIT ID + C CG C CP AI Sbjct: 279 CSKCLDVCPTGAITSAGE-----------HVAIDPLICAGCGACSALCPSGAI 320 >gi|127510991|ref|YP_001092188.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Shewanella loihica PV-4] gi|126636286|gb|ABO21929.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella loihica PV-4] Length = 558 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 26/74 (35%), Gaps = 9/74 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C C + CP QA+T C+ CGLC+ ACP I Sbjct: 424 NTDNCTLCLSCVSTCPTQALTDGGEKPALY---------FVEQACVQCGLCESACPEKVI 474 Query: 119 VEGPNFEFATETRQ 132 P F RQ Sbjct: 475 SLTPQINFDATARQ 488 Score = 37.8 bits (86), Expect = 0.49, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 18/53 (33%), Gaps = 11/53 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C CPA AI +ID C G C ACP AI Sbjct: 200 CSRCLNFCPADAIASVDHK-----------IEIDPYLCHGAGSCTNACPTGAI 241 >gi|320354112|ref|YP_004195451.1| electron transfer flavoprotein subunit alpha [Desulfobulbus propionicus DSM 2032] gi|320122614|gb|ADW18160.1| Electron transfer flavoprotein alpha subunit [Desulfobulbus propionicus DSM 2032] Length = 396 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 12/66 (18%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 E+C AC +CE C AI++E + C CG C E CP Sbjct: 1 MLIIDSEKCTACGICETSCAFGAISVEVDCAVVN------------ESCTLCGACVENCP 48 Query: 115 VDAIVE 120 V A+ Sbjct: 49 VGALRI 54 >gi|238756491|ref|ZP_04617796.1| Electron transport complex protein rnfB [Yersinia ruckeri ATCC 29473] gi|238705278|gb|EEP97690.1| Electron transport complex protein rnfB [Yersinia ruckeri ATCC 29473] Length = 207 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 26/85 (30%), Gaps = 10/85 (11%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 + E CI C C CP AI + + + C C LC Sbjct: 104 NPVRKVAFIDESNCIGCTKCIQACPVDAIIGAT----------RAMHTVLPDLCTGCDLC 153 Query: 110 QEACPVDAIVEGPNFEFATETRQEL 134 + CP D I P + +L Sbjct: 154 VDPCPTDCIEMIPVPMTTANWKWDL 178 >gi|229828064|ref|ZP_04454133.1| hypothetical protein GCWU000342_00113 [Shuttleworthia satelles DSM 14600] gi|229792658|gb|EEP28772.1| hypothetical protein GCWU000342_00113 [Shuttleworthia satelles DSM 14600] Length = 490 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 6/69 (8%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLC 109 +C C C CP +AI + P + +D ID KC+ CG C Sbjct: 126 MHIDPAKCKECGQCAKNCPYEAIVHLTRPCKRACPVGAITFDEYGFCKIDEEKCVSCGHC 185 Query: 110 QEACPVDAI 118 +CP AI Sbjct: 186 IHSCPFGAI 194 Score = 35.1 bits (79), Expect = 3.0, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 20/65 (30%), Gaps = 5/65 (7%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTV-----RYDIDMIKCIYCGLCQEACPV 115 C C + + + R ID KC CG C + CP Sbjct: 86 PACDDCAMQTYTVTDNCRFCLGKACINSCKFGAISEGDLRMHIDPAKCKECGQCAKNCPY 145 Query: 116 DAIVE 120 +AIV Sbjct: 146 EAIVH 150 >gi|225028913|ref|ZP_03718105.1| hypothetical protein EUBHAL_03202 [Eubacterium hallii DSM 3353] gi|224953752|gb|EEG34961.1| hypothetical protein EUBHAL_03202 [Eubacterium hallii DSM 3353] Length = 287 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 32/113 (28%), Positives = 43/113 (38%), Gaps = 22/113 (19%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 G + E++CI C +C C +AIT+E G ID KC Sbjct: 147 ENDVGIKGGMQVAWVEDKCIQCGVCVKACRNEAITLEDGKIS-----------IDTGKCN 195 Query: 105 YCGLCQEACPVDAIVEGPNFEFA-----------TETRQELYYDKERLLNNGD 146 YCG C ++CPVDA P + + ET E+LL D Sbjct: 196 YCGRCVKSCPVDAYDAQPGYIVSFGGTFGNHISKGETIIPFIESHEKLLKVCD 248 >gi|85059432|ref|YP_455134.1| electron transport complex protein RnfB [Sodalis glossinidius str. 'morsitans'] gi|123725402|sp|Q2NSZ6|RNFB_SODGM RecName: Full=Electron transport complex protein rnfB gi|84779952|dbj|BAE74729.1| putative iron-sulfur binding protein [Sodalis glossinidius str. 'morsitans'] Length = 190 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 22/69 (31%), Gaps = 10/69 (14%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 R E CI C C CP AI + + + C C LC C Sbjct: 106 RVAWIDEGNCIGCTKCIQACPVDAIVGAT----------RAVHTVVSDLCTGCDLCVAPC 155 Query: 114 PVDAIVEGP 122 P + I P Sbjct: 156 PTNCIEMRP 164 >gi|89092828|ref|ZP_01165780.1| iron-sulfur cluster-binding protein [Oceanospirillum sp. MED92] gi|89082853|gb|EAR62073.1| iron-sulfur cluster-binding protein [Oceanospirillum sp. MED92] Length = 555 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 30/82 (36%), Gaps = 9/82 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +C C C A+CP QA+T + C+ CGLC ACP +AI Sbjct: 420 DNAKCTLCLSCVAVCPTQALTAGGETPA---------LNFVEQSCVQCGLCDSACPENAI 470 Query: 119 VEGPNFEFATETRQELYYDKER 140 E + + KE Sbjct: 471 QLETRLSLVAERSESICIHKED 492 Score = 38.2 bits (87), Expect = 0.35, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 25/84 (29%), Gaps = 18/84 (21%) Query: 42 STSPRFRGEHALRRYPNGEERC-------IACKLCEAICPAQAITIESGPRCHDGTRRTV 94 + + + C C C +CPA AI+ + Sbjct: 163 DLPNYIGEFQKPKYFHINNDICAHSSRGQTGCTRCLDVCPADAISSIND----------- 211 Query: 95 RYDIDMIKCIYCGLCQEACPVDAI 118 +ID C G C ACP AI Sbjct: 212 LVNIDPHMCHGAGGCATACPTGAI 235 >gi|94984496|ref|YP_603860.1| 4Fe-4S ferredoxin, iron-sulfur binding [Deinococcus geothermalis DSM 11300] gi|94554777|gb|ABF44691.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Deinococcus geothermalis DSM 11300] Length = 334 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 34/99 (34%), Gaps = 16/99 (16%) Query: 36 YPFEKGS----------TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 P E+ P ++ CI C +C +CP QAIT E P Sbjct: 224 VPEERTPEEWRWRVRTLKPAPAPDAGVHWPAPLVDDTCIDCPVCANVCPTQAITREQKPE 283 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 V+ +++ C C C +CP AI + Sbjct: 284 GG------VQLLLNLSACTGCRACLRSCPPQAIHMQEEW 316 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 13/62 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 C C A CP +AI + +D +C CGLC + CP A+ ++ Sbjct: 34 CDACHATCPHEAIAFGPLGQS---------IQLDPQRCTGCGLCVQVCPSGAL----EYD 80 Query: 126 FA 127 Sbjct: 81 LT 82 >gi|331082469|ref|ZP_08331595.1| pyruvate:ferredoxin oxidoreductase [Lachnospiraceae bacterium 6_1_63FAA] gi|330400955|gb|EGG80556.1| pyruvate:ferredoxin oxidoreductase [Lachnospiraceae bacterium 6_1_63FAA] Length = 1178 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 28/92 (30%), Gaps = 18/92 (19%) Query: 58 NGEERCIACKLCEAICPAQ-----AITIESGPRCHDGTR---------RTVRYDIDMIKC 103 E CI C C +CP A+T +G + + C Sbjct: 688 WQPENCIQCNRCAYVCPHAVIRPVAMTDAEVAAAPEGMKTLPMTGMADYKFVMTVSAYDC 747 Query: 104 IYCGLCQEACP----VDAIVEGPNFEFATETR 131 CG C CP A+V E A E + Sbjct: 748 TGCGSCANVCPGKKGAKALVMANMEENAGEQK 779 >gi|312796966|ref|YP_004029888.1| Ferredoxin [Burkholderia rhizoxinica HKI 454] gi|312168741|emb|CBW75744.1| Ferredoxin [Burkholderia rhizoxinica HKI 454] Length = 355 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 22/64 (34%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C LC CP AI + + C C LC CPVD I Sbjct: 115 DETVCIGCTLCMQACPVDAIVGAPKQ----------LHTVLADWCTGCDLCVAPCPVDCI 164 Query: 119 VEGP 122 P Sbjct: 165 EMVP 168 Score = 38.2 bits (87), Expect = 0.36, Method: Composition-based stats. Identities = 16/28 (57%), Positives = 17/28 (60%) Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAI 118 R R ID CI C LC +ACPVDAI Sbjct: 107 RTRPRAVIDETVCIGCTLCMQACPVDAI 134 >gi|310779384|ref|YP_003967717.1| Cobyrinic acid ac-diamide synthase [Ilyobacter polytropus DSM 2926] gi|309748707|gb|ADO83369.1| Cobyrinic acid ac-diamide synthase [Ilyobacter polytropus DSM 2926] Length = 286 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 44/118 (37%), Gaps = 21/118 (17%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 + L++ + +CI CK C +C +I+ DI+ KC CG Sbjct: 54 KNFVGLQKAFLDKSKCIMCKKCYELCKYSSISSN--------------IDINAGKCEGCG 99 Query: 108 LCQEACPVDAIVEGPN----FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161 LC+ CP AI + + ++ + K L G+ ++V + + Sbjct: 100 LCEYICPASAITMKDTVIGKLSVSETSFGDMVHAK---LIPGEDASGKLVAEVRKTAK 154 >gi|291280352|ref|YP_003497187.1| NADH-quinone oxidoreductase subunit F [Deferribacter desulfuricans SSM1] gi|290755054|dbj|BAI81431.1| NADH-quinone oxidoreductase, F subunit [Deferribacter desulfuricans SSM1] Length = 596 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 10/71 (14%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R L + E+RC C +C +CP AI+ E G ID KC+ C Sbjct: 535 RECPELIEFVVDEDRCKKCGICFKVCPVGAISWEKGKPA----------YIDKSKCVKCR 584 Query: 108 LCQEACPVDAI 118 C CP +AI Sbjct: 585 ECIVNCPFNAI 595 Score = 38.9 bits (89), Expect = 0.23, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 19/51 (37%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + I+ + + +D +C CG+C + CPV AI Sbjct: 517 KYFRHEYEAHIKDRKCPARECPELIEFVVDEDRCKKCGICFKVCPVGAISW 567 >gi|257465877|ref|ZP_05630188.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium gonidiaformans ATCC 25563] Length = 1113 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 40/122 (32%), Gaps = 22/122 (18%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-------------QAITIESGP 84 FE G+++ RG +CI C C +CP A +E Sbjct: 676 FENGTSAFEKRGVAVDVPLW-DSTKCIQCNQCSYVCPHAVIRPFLISEEEKSASPVEFAT 734 Query: 85 RCHDGTRRT---VRYDIDMIKCIYCGLCQEACPVD--AIVEGPN---FEFATETRQELYY 136 G R + + C+ CG C CP AI P + + + + + Sbjct: 735 LKAMGKGLDGLTYRIQVSPLDCVGCGSCVNVCPAPGKAITMQPIATSIDAEEDKKADYLF 794 Query: 137 DK 138 +K Sbjct: 795 NK 796 >gi|229131527|ref|ZP_04260415.1| formate dehydrogenase [Bacillus cereus BDRD-ST196] gi|228651927|gb|EEL07876.1| formate dehydrogenase [Bacillus cereus BDRD-ST196] Length = 980 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + R + Sbjct: 125 KYPYE--PKVSACEVDTSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWSLDRPRVI 182 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 + I+ C+ CG C CP +A++E Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211 Score = 39.7 bits (91), Expect = 0.12, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-------TVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKVHNTVHMMEIEEQKYPYEPKVSACEVDTSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|229165530|ref|ZP_04293309.1| formate dehydrogenase [Bacillus cereus AH621] gi|228617932|gb|EEK74978.1| formate dehydrogenase [Bacillus cereus AH621] Length = 980 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + R + Sbjct: 125 KYPYE--PKVSACEVDTSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWSLDRPRVI 182 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 + I+ C+ CG C CP +A++E Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211 Score = 39.7 bits (91), Expect = 0.12, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-------TVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKVHNTVHMMEIEEQKYPYEPKVSACEVDTSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|134298308|ref|YP_001111804.1| CoB--CoM heterodisulfide reductase [Desulfotomaculum reducens MI-1] gi|134051008|gb|ABO48979.1| CoB--CoM heterodisulfide reductase [Desulfotomaculum reducens MI-1] Length = 722 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 39/119 (32%), Gaps = 12/119 (10%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR----- 91 P E + + A+ + CI C C CP A E + G R Sbjct: 287 PQEVHILFLKHGRQEAIDKGFAESLYCINCGSCLNFCPIYAEIGEKYGYKYLGGRGLVFT 346 Query: 92 -----RTVRYDIDMIKCIYCGLCQEACPVDAIV--EGPNFEFATETRQELYYDKERLLN 143 + + CI C C+ +CPV N ++ L + KER+L Sbjct: 347 AFHGDLQKTVESGLSLCIGCQKCKNSCPVQMNTPEMLKNLRQEQVQQEGLGWKKERMLA 405 >gi|332880667|ref|ZP_08448341.1| electron transfer flavoprotein FAD-binding domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681655|gb|EGJ54578.1| electron transfer flavoprotein FAD-binding domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 404 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 12/64 (18%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 +C++C +C C AI + P C CG C +ACPV A V Sbjct: 17 QCVSCGICAESCAYGAIRMGDFPEVD------------EENCRLCGGCVQACPVGAWVMQ 64 Query: 122 PNFE 125 E Sbjct: 65 RQDE 68 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 11/45 (24%), Positives = 17/45 (37%) Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 + + +C+ CG+C E+C AI G E E Sbjct: 1 MKMNKDKDFILQLQAGQCVSCGICAESCAYGAIRMGDFPEVDEEN 45 >gi|229056364|ref|ZP_04195780.1| formate dehydrogenase [Bacillus cereus AH603] gi|228720969|gb|EEL72514.1| formate dehydrogenase [Bacillus cereus AH603] Length = 980 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + R + Sbjct: 125 KYPYE--PKVSACEVDTSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWSLDRPRVI 182 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 + I+ C+ CG C CP +A++E Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211 Score = 39.7 bits (91), Expect = 0.12, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-------TVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKVHNTVHMMEIEEQKYPYEPKVSACEVDTSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|48477627|ref|YP_023333.1| putative ATPase RIL [Picrophilus torridus DSM 9790] gi|48430275|gb|AAT43140.1| RNase L inhibitor homolog, predicted ATPase [Picrophilus torridus DSM 9790] Length = 588 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 1/65 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +RC K C C + SG + + + I CI CG+C CP +AI Sbjct: 7 DRDRCHP-KKCNHECRYYCPPVRSGSKTIEFPDVDAQPVITENLCIGCGICVRRCPFNAI 65 Query: 119 VEGPN 123 Sbjct: 66 KIVTI 70 >gi|294677266|ref|YP_003577881.1| pyridine nucleotide-disulfide oxidoreductase family protein [Rhodobacter capsulatus SB 1003] gi|294476086|gb|ADE85474.1| pyridine nucleotide-disulfide oxidoreductase family protein [Rhodobacter capsulatus SB 1003] Length = 547 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 24/70 (34%), Gaps = 3/70 (4%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 R +RC +C C A E H R Y I++ KC C C C Sbjct: 476 REARYEAQRCYSCGQCYECDNCFAACPEQAIVKHGPGRG---YRIELTKCTGCASCVAQC 532 Query: 114 PVDAIVEGPN 123 P A+ P Sbjct: 533 PCGAMELMPE 542 >gi|78778017|ref|YP_394332.1| NADH dehydrogenase subunit G [Sulfurimonas denitrificans DSM 1251] gi|78498557|gb|ABB45097.1| Ferredoxin [Sulfurimonas denitrificans DSM 1251] Length = 750 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 25/74 (33%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 + R CI C+ C +C + V + +++ C Sbjct: 133 DQLRPIKHWGLIDYEASLCIMCEKCVHVCNEVIGDDAIEIKVGGYNSIIVPKNSELLDCT 192 Query: 105 YCGLCQEACPVDAI 118 +CG C CPV A+ Sbjct: 193 FCGECIAVCPVGAL 206 >gi|163938512|ref|YP_001643396.1| formate dehydrogenase, alpha subunit [Bacillus weihenstephanensis KBAB4] gi|163860709|gb|ABY41768.1| formate dehydrogenase, alpha subunit [Bacillus weihenstephanensis KBAB4] Length = 980 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + R + Sbjct: 125 KYPYE--PKVSACEVDTSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWSLDRPRVI 182 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 + I+ C+ CG C CP +A++E Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211 Score = 39.7 bits (91), Expect = 0.12, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-------TVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKVHNTVHMMEIEEQKYPYEPKVSACEVDTSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|315917034|ref|ZP_07913274.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium gonidiaformans ATCC 25563] gi|313690909|gb|EFS27744.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium gonidiaformans ATCC 25563] Length = 1115 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 40/122 (32%), Gaps = 22/122 (18%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-------------QAITIESGP 84 FE G+++ RG +CI C C +CP A +E Sbjct: 678 FENGTSAFEKRGVAVDVPLW-DSTKCIQCNQCSYVCPHAVIRPFLISEEEKSASPVEFAT 736 Query: 85 RCHDGTRRT---VRYDIDMIKCIYCGLCQEACPVD--AIVEGPN---FEFATETRQELYY 136 G R + + C+ CG C CP AI P + + + + + Sbjct: 737 LKAMGKGLDGLTYRIQVSPLDCVGCGSCVNVCPAPGKAITMQPIATSIDAEEDKKADYLF 796 Query: 137 DK 138 +K Sbjct: 797 NK 798 >gi|307596381|ref|YP_003902698.1| methyl-viologen-reducing hydrogenase subunit delta [Vulcanisaeta distributa DSM 14429] gi|307551582|gb|ADN51647.1| methyl-viologen-reducing hydrogenase delta subunit [Vulcanisaeta distributa DSM 14429] Length = 1129 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 20/62 (32%), Gaps = 10/62 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +C C LC CP AI G + C CG C CP DAI Sbjct: 917 DWSKCTKCGLCIKACPYGAIRGVPGK----------WIEHIPAACQGCGACVAECPQDAI 966 Query: 119 VE 120 Sbjct: 967 TL 968 Score = 38.2 bits (87), Expect = 0.36, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 18/49 (36%) Query: 74 PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 A A T+ D KC CGLC +ACP AI P Sbjct: 892 YAAASRALMMLAQGYVTKEPFIPKFDWSKCTKCGLCIKACPYGAIRGVP 940 Score = 34.7 bits (78), Expect = 4.7, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 28/92 (30%), Gaps = 14/92 (15%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP-------RCHDGTRRTVRY 96 SP L + + C C CE +CP + Y Sbjct: 86 SPGDFKARILVKPRYVTDDCTKCGQCEDVCPVIVPSEFEAGIGARKAIYLPFPQAEPGIY 145 Query: 97 DIDMIKCIY-------CGLCQEACPVDAIVEG 121 +D+ C+ C C +AC +AI+ Sbjct: 146 MLDIDHCLNKPPNYFPCDRCAKACDRNAIIYT 177 >gi|269104601|ref|ZP_06157297.1| formate dehydrogenase-O major subunit [Photobacterium damselae subsp. damselae CIP 102761] gi|268161241|gb|EEZ39738.1| formate dehydrogenase-O major subunit [Photobacterium damselae subsp. damselae CIP 102761] Length = 1376 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 9/69 (13%) Query: 59 GEERCIACKLCEAICPAQAITIE---------SGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 RCI+C C C +A+ + + + ++ KC+ CG C Sbjct: 607 DANRCISCGQCVQACNEKAVHGVLSFMKNADGTPAQRPECRPGFDGVNMGDSKCVQCGAC 666 Query: 110 QEACPVDAI 118 +ACP A+ Sbjct: 667 VQACPTGAL 675 Score = 34.3 bits (77), Expect = 5.6, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 23/71 (32%), Gaps = 6/71 (8%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P ++ P F G + G+ +C+ C C CP A+ + T Sbjct: 639 TPAQRPECRPGFDGVNM------GDSKCVQCGACVQACPTGALVDKRDKAQGRIELLTPV 692 Query: 96 YDIDMIKCIYC 106 I I C Sbjct: 693 ETICTYCGIGC 703 >gi|238919826|ref|YP_002933341.1| pyruvate:ferredoxin [Edwardsiella ictaluri 93-146] gi|238869395|gb|ACR69106.1| pyruvate:ferredoxin [Edwardsiella ictaluri 93-146] Length = 1176 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 35/135 (25%), Gaps = 32/135 (23%) Query: 31 KTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI-------- 80 + P + + A C C C A CP AI Sbjct: 655 PVSAFPPDGTWPVGTTRWEKRNIAETIPIWQPALCTQCNHCVAACPHAAIRAKVVTPTAL 714 Query: 81 ----------ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP--------VDAIVEGP 122 E R G R + C C LC CP V AI P Sbjct: 715 EHAPATLESLEVRARDLRGERY--VLQVAPEDCTGCNLCVTVCPAADRQDPDVKAINMQP 772 Query: 123 NFEFATETRQELYYD 137 E R++ +YD Sbjct: 773 RLEN--LAREKAHYD 785 >gi|218782911|ref|YP_002434229.1| ferredoxin [Desulfatibacillum alkenivorans AK-01] gi|218764295|gb|ACL06761.1| Heterodisulfide reductase, subunit A-like protein [Desulfatibacillum alkenivorans AK-01] Length = 1076 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 24/75 (32%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G R + E CI C LC +C + + + + + C CG Sbjct: 110 GIEKSRFGEDNENDCILCGLCVRVCEKMGNSAITLTGRGLEMKVDTPFSVQSDICKGCGA 169 Query: 109 CQEACPVDAIVEGPN 123 C+ CP I Sbjct: 170 CEFICPTGHIKLENI 184 Score = 40.9 bits (94), Expect = 0.069, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 9/62 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C CK+C +ICP A +T + +I C CGLC +C AI Sbjct: 1009 DSQFCSGCKVCVSICPYSAPLFNE---------KTGKAEIQSTLCKGCGLCVASCRSGAI 1059 Query: 119 VE 120 Sbjct: 1060 HL 1061 >gi|110803341|ref|YP_698302.1| nitroreductase family protein [Clostridium perfringens SM101] gi|110683842|gb|ABG87212.1| nitroreductase family protein [Clostridium perfringens SM101] Length = 272 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 15/91 (16%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 +CI C LC C I + G I CI CG C CP Sbjct: 1 MMNVDTSKCIGCTLCMQDCIVSDIEMVDGKAH-----------IKNESCIECGHCIAICP 49 Query: 115 VDAIVEGPNFEFA---TETRQELYYDKERLL 142 +A+ + +++ + ++ D +RLL Sbjct: 50 KEAVSDS-DYDMSKIQEYKKESFDIDSDRLL 79 >gi|238792134|ref|ZP_04635769.1| Electron transport complex protein rnfB [Yersinia intermedia ATCC 29909] gi|238728371|gb|EEQ19890.1| Electron transport complex protein rnfB [Yersinia intermedia ATCC 29909] Length = 207 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 24/78 (30%), Gaps = 10/78 (12%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C C CP AI + + + C C LC CP D Sbjct: 111 FIDEANCIGCTKCIQACPVDAIVGAT----------RAMHTVLPDLCTGCDLCVAPCPTD 160 Query: 117 AIVEGPNFEFATETRQEL 134 I P + +L Sbjct: 161 CIEMIPVAATTANWKWDL 178 >gi|323268765|gb|EGA52224.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 655 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + + CI CG C CP Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 N RQ E+ N R E + ++ R Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459 >gi|323242646|gb|EGA26667.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] Length = 673 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + + CI CG C CP Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 N RQ E+ N R E + ++ R Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459 >gi|323232168|gb|EGA16274.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] Length = 561 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + + CI CG C CP Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 N RQ E+ N R E + ++ R Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459 >gi|323224588|gb|EGA08865.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323254810|gb|EGA38608.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] Length = 552 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + + CI CG C CP Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 N RQ E+ N R E + ++ R Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459 >gi|323217293|gb|EGA02013.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] Length = 579 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + + CI CG C CP Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 N RQ E+ N R E + ++ R Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459 >gi|323211028|gb|EFZ95887.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323237790|gb|EGA21849.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323266729|gb|EGA50216.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] Length = 595 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + + CI CG C CP Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 N RQ E+ N R E + ++ R Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459 >gi|323205623|gb|EFZ90586.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] Length = 590 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + + CI CG C CP Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 N RQ E+ N R E + ++ R Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459 >gi|323198190|gb|EFZ83299.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] Length = 557 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + + CI CG C CP Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 N RQ E+ N R E + ++ R Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459 >gi|322680007|gb|EFY76046.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] Length = 673 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + + CI CG C CP Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 N RQ E+ N R E + ++ R Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459 >gi|322677330|gb|EFY73394.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] Length = 735 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + + CI CG C CP Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 N RQ E+ N R E + ++ R Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459 >gi|322667964|gb|EFY64124.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] Length = 582 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + + CI CG C CP Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 N RQ E+ N R E + ++ R Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459 >gi|322665219|gb|EFY61407.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|323194067|gb|EFZ79266.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323202876|gb|EFZ87911.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] Length = 642 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + + CI CG C CP Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 N RQ E+ N R E + ++ R Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459 >gi|322658697|gb|EFY54955.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] Length = 570 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + + CI CG C CP Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 N RQ E+ N R E + ++ R Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459 >gi|322650862|gb|EFY47253.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] Length = 559 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + + CI CG C CP Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 N RQ E+ N R E + ++ R Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459 >gi|322646614|gb|EFY43122.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] Length = 565 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + + CI CG C CP Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 N RQ E+ N R E + ++ R Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459 >gi|322641119|gb|EFY37762.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] Length = 644 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + + CI CG C CP Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 N RQ E+ N R E + ++ R Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459 >gi|322622924|gb|EFY19766.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] Length = 586 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + + CI CG C CP Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 N RQ E+ N R E + ++ R Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459 >gi|322620523|gb|EFY17385.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322685564|gb|EFY81560.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] Length = 569 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + + CI CG C CP Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 N RQ E+ N R E + ++ R Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459 >gi|322616074|gb|EFY12990.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322628769|gb|EFY25554.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322631479|gb|EFY28237.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638814|gb|EFY35509.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322654536|gb|EFY50857.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322671624|gb|EFY67745.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|323221947|gb|EGA06338.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323234339|gb|EGA18426.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323260352|gb|EGA43970.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] Length = 562 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + + CI CG C CP Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 N RQ E+ N R E + ++ R Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459 >gi|320086067|emb|CBY95841.1| Electron transport complex protein rnfC [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 642 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + + CI CG C CP Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 N RQ E+ N R E + ++ R Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459 >gi|313889048|ref|ZP_07822706.1| 4Fe-4S binding domain protein [Peptoniphilus harei ACS-146-V-Sch2b] gi|312844921|gb|EFR32324.1| 4Fe-4S binding domain protein [Peptoniphilus harei ACS-146-V-Sch2b] Length = 501 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 6/66 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQEA 112 +++C+ C C CP AI P R +ID KC+ CG C Sbjct: 146 DKDKCVRCGRCHDACPYSAIVKYERPCAAACGVDAISSDEFGRAEIDHDKCVACGRCIAE 205 Query: 113 CPVDAI 118 CP AI Sbjct: 206 CPFGAI 211 Score = 41.6 bits (96), Expect = 0.041, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 33/84 (39%), Gaps = 14/84 (16%) Query: 38 FEKGSTSPRFRGEHAL-RRYPNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTV 94 +EK + G A + + C C C +CP AI++ Sbjct: 93 YEKPLINVIKFGCEACPTKAYYTTDNCRKCLAHPCINVCPVNAISMGKD----------- 141 Query: 95 RYDIDMIKCIYCGLCQEACPVDAI 118 R ID KC+ CG C +ACP AI Sbjct: 142 RTIIDKDKCVRCGRCHDACPYSAI 165 >gi|296132692|ref|YP_003639939.1| NIL domain protein [Thermincola sp. JR] gi|296031270|gb|ADG82038.1| NIL domain protein [Thermincola potens JR] Length = 137 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 31/65 (47%), Gaps = 9/65 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +RC C C ++CP A+ I R ++ D KCI CGLC +ACPV AI Sbjct: 80 DVDRCTHCGHCTSLCPVGALYII---------RPSMEVAFDEEKCIVCGLCLKACPVKAI 130 Query: 119 VEGPN 123 N Sbjct: 131 ELNFN 135 >gi|238911689|ref|ZP_04655526.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 644 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + + CI CG C CP Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 N RQ E+ N R E + ++ R Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459 >gi|260587961|ref|ZP_05853874.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Blautia hansenii DSM 20583] gi|260541488|gb|EEX22057.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Blautia hansenii DSM 20583] Length = 1188 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 28/92 (30%), Gaps = 18/92 (19%) Query: 58 NGEERCIACKLCEAICPAQ-----AITIESGPRCHDGTR---------RTVRYDIDMIKC 103 E CI C C +CP A+T +G + + C Sbjct: 698 WQPENCIQCNRCAYVCPHAVIRPVAMTDAEVAAAPEGMKTLPMTGMADYKFVMTVSAYDC 757 Query: 104 IYCGLCQEACP----VDAIVEGPNFEFATETR 131 CG C CP A+V E A E + Sbjct: 758 TGCGSCANVCPGKKGAKALVMANMEENAGEQK 789 >gi|224584034|ref|YP_002637832.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|254807932|sp|C0Q508|RNFC_SALPC RecName: Full=Electron transport complex protein rnfC gi|224468561|gb|ACN46391.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 704 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + + CI CG C CP Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 N RQ E+ N R E + ++ R Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459 >gi|207857039|ref|YP_002243690.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|226735450|sp|B5QV02|RNFC_SALEP RecName: Full=Electron transport complex protein rnfC gi|206708842|emb|CAR33172.1| Electron transport complex protein [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 704 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + + CI CG C CP Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 N RQ E+ N R E + ++ R Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459 >gi|205352830|ref|YP_002226631.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|226735451|sp|B5RAK2|RNFC_SALG2 RecName: Full=Electron transport complex protein rnfC gi|205272611|emb|CAR37520.1| putative electron transport complex protein [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|326627901|gb|EGE34244.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 673 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + + CI CG C CP Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 N RQ E+ N R E + ++ R Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459 >gi|168819208|ref|ZP_02831208.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205343902|gb|EDZ30666.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] Length = 704 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + + CI CG C CP Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 N RQ E+ N R E + ++ R Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459 >gi|168463131|ref|ZP_02697062.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195633861|gb|EDX52213.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 735 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + + CI CG C CP Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 N RQ E+ N R E + ++ R Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459 >gi|168264620|ref|ZP_02686593.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|200390674|ref|ZP_03217285.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199603119|gb|EDZ01665.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205346950|gb|EDZ33581.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 735 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + + CI CG C CP Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 N RQ E+ N R E + ++ R Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459 >gi|194443713|ref|YP_002040706.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|226735453|sp|B4T594|RNFC_SALNS RecName: Full=Electron transport complex protein rnfC gi|194402376|gb|ACF62598.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 735 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + + CI CG C CP Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 N RQ E+ N R E + ++ R Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459 >gi|168240973|ref|ZP_02665905.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194448184|ref|YP_002045495.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|226735452|sp|B4THD4|RNFC_SALHS RecName: Full=Electron transport complex protein rnfC gi|194406488|gb|ACF66707.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205339389|gb|EDZ26153.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 735 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + + CI CG C CP Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 N RQ E+ N R E + ++ R Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459 >gi|204927691|ref|ZP_03218892.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204323033|gb|EDZ08229.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 729 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + + CI CG C CP Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 N RQ E+ N R E + ++ R Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459 >gi|197250222|ref|YP_002146588.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|226735448|sp|B5F6J0|RNFC_SALA4 RecName: Full=Electron transport complex protein rnfC gi|197213925|gb|ACH51322.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 735 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + + CI CG C CP Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 N RQ E+ N R E + ++ R Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459 >gi|168235530|ref|ZP_02660588.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194734341|ref|YP_002114470.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|226735455|sp|B4TV17|RNFC_SALSV RecName: Full=Electron transport complex protein rnfC gi|194709843|gb|ACF89064.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197291094|gb|EDY30447.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 732 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + + CI CG C CP Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 N RQ E+ N R E + ++ R Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459 >gi|168229832|ref|ZP_02654890.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194470158|ref|ZP_03076142.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194456522|gb|EDX45361.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205335440|gb|EDZ22204.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 735 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + + CI CG C CP Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 N RQ E+ N R E + ++ R Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459 >gi|198244954|ref|YP_002215678.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|226735449|sp|B5FIE7|RNFC_SALDC RecName: Full=Electron transport complex protein rnfC gi|197939470|gb|ACH76803.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|326623424|gb|EGE29769.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 704 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + + CI CG C CP Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 N RQ E+ N R E + ++ R Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459 >gi|167551572|ref|ZP_02345326.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205323654|gb|EDZ11493.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 735 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + + CI CG C CP Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 N RQ E+ N R E + ++ R Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459 >gi|197265683|ref|ZP_03165757.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197243938|gb|EDY26558.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 735 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + + CI CG C CP Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 N RQ E+ N R E + ++ R Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459 >gi|121611067|ref|YP_998874.1| dihydropyrimidine dehydrogenase [Verminephrobacter eiseniae EF01-2] gi|121555707|gb|ABM59856.1| dihydroorotate dehydrogenase family protein [Verminephrobacter eiseniae EF01-2] Length = 436 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 6/63 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117 + CI C C A+C A + R+ + +C+ C LC CPV Sbjct: 342 DQAACIRCGRCHAVCEDSAHQAITAMVDGV-----RRFQVKEEECVGCNLCASICPVPDC 396 Query: 118 IVE 120 I Sbjct: 397 ITM 399 >gi|62180045|ref|YP_216462.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|75483500|sp|Q57PI0|RNFC_SALCH RecName: Full=Electron transport complex protein rnfC gi|62127678|gb|AAX65381.1| putative respiratory-chain NADH dehydrogenase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322714515|gb|EFZ06086.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 704 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + + CI CG C CP Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 N RQ E+ N R E + ++ R Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459 >gi|56413574|ref|YP_150649.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362498|ref|YP_002142135.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|81360680|sp|Q5PIB9|RNFC_SALPA RecName: Full=Electron transport complex protein rnfC gi|226735454|sp|B5BKB2|RNFC_SALPK RecName: Full=Electron transport complex protein rnfC gi|56127831|gb|AAV77337.1| putative NADH reducing dehydrogenase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093975|emb|CAR59471.1| putative NADH reducing dehydrogenase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 735 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + + CI CG C CP Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 N RQ E+ N R E + ++ R Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459 >gi|29141784|ref|NP_805126.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213051629|ref|ZP_03344507.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213425981|ref|ZP_03358731.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|213649168|ref|ZP_03379221.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213855037|ref|ZP_03383277.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|29137412|gb|AAO68975.1| putative NADH reducing dehydrogenase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 673 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + + CI CG C CP Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 N RQ E+ N R E + ++ R Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459 >gi|16764805|ref|NP_460420.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167994288|ref|ZP_02575380.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|24638187|sp|Q8ZPM2|RNFC_SALTY RecName: Full=Electron transport complex protein rnfC gi|16419978|gb|AAL20379.1| putative respiratory-chain NADH dehydrogenase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|205327844|gb|EDZ14608.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261246661|emb|CBG24471.1| Electron transport complex protein rnfC [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993347|gb|ACY88232.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301157990|emb|CBW17485.1| Electron transport complex protein rnfC [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912440|dbj|BAJ36414.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321224076|gb|EFX49139.1| Electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323129727|gb|ADX17157.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988342|gb|AEF07325.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 735 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + + CI CG C CP Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 N RQ E+ N R E + ++ R Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459 >gi|16760456|ref|NP_456073.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|25330737|pir||AE0692 probable NADH reducing dehydrogenase STY1665 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502752|emb|CAD01910.1| putative NADH reducing dehydrogenase [Salmonella enterica subsp. enterica serovar Typhi] Length = 673 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 34/107 (31%), Gaps = 18/107 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + + CI CG C CP Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 N RQ E+ N R E + ++ R Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459 >gi|291617337|ref|YP_003520079.1| RnfC [Pantoea ananatis LMG 20103] gi|291152367|gb|ADD76951.1| RnfC [Pantoea ananatis LMG 20103] Length = 667 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 24/110 (21%), Positives = 38/110 (34%), Gaps = 3/110 (2%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 E+ CI C C CPA+ + + G R + CI CG C C Sbjct: 368 MGNDEQEQSCIRCSACADACPAKLLPQQLYWYSKGGDHDKAR-AHHIDDCIECGACAYVC 426 Query: 114 PVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 P I + + + + +R L R+E+ R + + R Sbjct: 427 P-SNIPLVQYYRQEKAELRAIDLEAKRTLEAKARFEARQAR-LEREKQAR 474 >gi|270297046|ref|ZP_06203245.1| NADH:ubiquinone oxidoreductase [Bacteroides sp. D20] gi|270273033|gb|EFA18896.1| NADH:ubiquinone oxidoreductase [Bacteroides sp. D20] Length = 588 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 35/89 (39%), Gaps = 5/89 (5%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVR 95 PF G SP R ++CI C+ CE++C Q + R T Sbjct: 131 PFNGGELSP--RKREVTSSIVRNMDKCIFCRRCESVCNDVQTVGALGAIRRGFNTTIAPA 188 Query: 96 YDIDMIK--CIYCGLCQEACPVDAIVEGP 122 +D M C YCG C CPV A+ E Sbjct: 189 FDKMMTDSECTYCGQCVAVCPVGALTERD 217 Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 5/67 (7%) Query: 52 ALRRYPNGEERCIACKLCEAICPA-----QAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 L +PN C C CE A + + G T +M KCI+C Sbjct: 99 ILSDHPNDCLTCPKCGNCELQTLALRFNIRTMPFNGGELSPRKREVTSSIVRNMDKCIFC 158 Query: 107 GLCQEAC 113 C+ C Sbjct: 159 RRCESVC 165 >gi|257063355|ref|YP_003143027.1| NADH:ubiquinone oxidoreductase chain I-like protein [Slackia heliotrinireducens DSM 20476] gi|256791008|gb|ACV21678.1| NADH:ubiquinone oxidoreductase chain I-like protein [Slackia heliotrinireducens DSM 20476] Length = 401 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 6/60 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C +CK+C CP AI G V +C++CGLCQ+ CP AI Sbjct: 298 DFNACKSCKMCAVFCPTGAICKYRDENGVAGIEHYV------AECVHCGLCQDICPAGAI 351 Score = 42.4 bits (98), Expect = 0.024, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 11/53 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C C + AI++E G + ++ C+ CG C CP A+ Sbjct: 43 CSRCADACTSGAISLEHGE-----------WSMNPDLCVGCGTCATVCPTCAL 84 >gi|229010017|ref|ZP_04167231.1| formate dehydrogenase [Bacillus mycoides DSM 2048] gi|228751150|gb|EEM00962.1| formate dehydrogenase [Bacillus mycoides DSM 2048] Length = 980 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + R + Sbjct: 125 KYPYE--PKVSACEVDTSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWSLDRPRVI 182 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 + I+ C+ CG C CP +A++E Sbjct: 183 WDNGVSINDSSCVSCGQCVTVCPCNALME 211 Score = 39.7 bits (91), Expect = 0.12, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-------TVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKVHNTVHMMEIEEQKYPYEPKVSACEVDTSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|229015909|ref|ZP_04172873.1| formate dehydrogenase [Bacillus cereus AH1273] gi|229022131|ref|ZP_04178682.1| formate dehydrogenase [Bacillus cereus AH1272] gi|228739132|gb|EEL89577.1| formate dehydrogenase [Bacillus cereus AH1272] gi|228745366|gb|EEL95404.1| formate dehydrogenase [Bacillus cereus AH1273] Length = 971 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + R + Sbjct: 116 KYPYE--PKVSACEVDTSHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWSLDRPRVI 173 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 + I+ C+ CG C CP +A++E Sbjct: 174 WDNGVSINDSSCVSCGQCVTVCPCNALME 202 Score = 39.7 bits (91), Expect = 0.12, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRR-------TVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 82 RILENHLLYCTVCDNNNGNCKVHNTVHMMEIEEQKYPYEPKVSACEVDTSHPFYRYDPNQ 141 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 142 CIACGQCVEVC 152 >gi|220905127|ref|YP_002480439.1| Cobyrinic acid ac-diamide synthase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869426|gb|ACL49761.1| Cobyrinic acid ac-diamide synthase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 306 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 32/94 (34%), Gaps = 14/94 (14%) Query: 34 INYPFEKGSTSPRFRGEHALR---RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT 90 ++ P P+ R E A + C C C +C A++ E Sbjct: 40 VDVPDLHIIFKPQVRKEQAFISGNTAVINRQACTLCGRCMDLCRFGAVSREGE------- 92 Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 Y ID + C CG+C + CP A+ Sbjct: 93 ----FYHIDALDCEGCGVCHKLCPAGAVEFPQRH 122 >gi|254412467|ref|ZP_05026241.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Microcoleus chthonoplastes PCC 7420] gi|196180777|gb|EDX75767.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Microcoleus chthonoplastes PCC 7420] Length = 1204 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 27/91 (29%), Gaps = 16/91 (17%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPR 85 T+ + AL + C+ C C +CP A Sbjct: 670 PTGTTKWEKRNVALEVPVWDPDVCVQCGKCVMVCPHAVIRGKSYDSQVLENAPDSFKSTD 729 Query: 86 CHDGTRRTVRYDIDM--IKCIYCGLCQEACP 114 D ++ I + C CG+C + CP Sbjct: 730 TRDKEYGGQKFTIQVAVEDCTGCGICVDVCP 760 >gi|189461827|ref|ZP_03010612.1| hypothetical protein BACCOP_02493 [Bacteroides coprocola DSM 17136] gi|189431421|gb|EDV00406.1| hypothetical protein BACCOP_02493 [Bacteroides coprocola DSM 17136] Length = 1182 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 27/81 (33%), Gaps = 15/81 (18%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG A N E CI C C +CP A T Sbjct: 676 RGVAAFVPEWN-PETCIQCNKCAYVCPHAAIRPFVLDANEQAGANFATLKAVGKQFDGMT 734 Query: 94 VRYDIDMIKCIYCGLCQEACP 114 R +D++ C+ CG C + CP Sbjct: 735 FRVQVDVMDCLGCGNCADVCP 755 Score = 33.9 bits (76), Expect = 8.3, Method: Composition-based stats. Identities = 8/20 (40%), Positives = 9/20 (45%) Query: 99 DMIKCIYCGLCQEACPVDAI 118 + CI C C CP AI Sbjct: 686 NPETCIQCNKCAYVCPHAAI 705 >gi|126463501|ref|YP_001044615.1| formate dehydrogenase, alpha subunit [Rhodobacter sphaeroides ATCC 17029] gi|126105165|gb|ABN77843.1| formate dehydrogenase, alpha subunit [Rhodobacter sphaeroides ATCC 17029] Length = 960 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 29/92 (31%), Gaps = 4/92 (4%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDID 99 + + + +CI C C C A+TIE + Sbjct: 162 PQWMVKDESNPYFTYDPSKCIVCSRCVRACEEVQGTFALTIEGRGFDSRVSAGMASDSFL 221 Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 C+ CG C +ACP + E E T R Sbjct: 222 TSDCVSCGACVQACPTATLQEKSVIEIGTPER 253 >gi|302386104|ref|YP_003821926.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Clostridium saccharolyticum WM1] gi|302196732|gb|ADL04303.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Clostridium saccharolyticum WM1] Length = 368 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 11/62 (17%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 EE CI C CE C AI+ ++ ID C+ CG C CPVD Sbjct: 191 HVTEETCIGCHACEKNCAHSAISFQNKKAG-----------IDHNLCVGCGRCIGVCPVD 239 Query: 117 AI 118 A+ Sbjct: 240 AV 241 >gi|330508801|ref|YP_004385229.1| iron-sulfur cluster/F420 dehydrogenase/hydrogenase fusion protein [Methanosaeta concilii GP-6] gi|328929609|gb|AEB69411.1| iron-sulfur cluster/F420 dehydrogenase/hydrogenase fusion protein [Methanosaeta concilii GP-6] Length = 474 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 29/98 (29%), Gaps = 2/98 (2%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI-ESGPRCHDGTRRT 93 P EK R+ EE+CI C LC +C + Sbjct: 94 RCPKEKQIQDLAREYGVIEPRFKLEEEKCILCGLCCRVCGEMVGVFAINFQNRGTDRSVG 153 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIV-EGPNFEFATET 130 Y CI CG C CP AI + F E Sbjct: 154 APYGELSEDCIACGACSLVCPTSAISAQRNIFPLTAED 191 >gi|313836234|gb|EFS73948.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL037PA2] gi|314927671|gb|EFS91502.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL044PA1] gi|314971330|gb|EFT15428.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL037PA3] gi|328906270|gb|EGG26045.1| LOW QUALITY PROTEIN: NADH dehydrogenase subunit [Propionibacterium sp. P08] Length = 102 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 8/85 (9%) Query: 59 GEERCIACKLCEAICPAQAITIES--------GPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + C +C +C CP ITI++ R + ID C+YCG+C Sbjct: 9 NVDACTSCVICARECPVWCITIDAHHESVPSSDVRRPRTVAVLDEFTIDWGLCMYCGMCI 68 Query: 111 EACPVDAIVEGPNFEFATETRQELY 135 E+CP DA+ + +R +L Sbjct: 69 ESCPFDALSWSDKRVPDSASRTDLV 93 >gi|255525709|ref|ZP_05392641.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7] gi|296184813|ref|ZP_06853224.1| putative NAD-dependent formate dehydrogenase, beta subunit [Clostridium carboxidivorans P7] gi|255510611|gb|EET86919.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7] gi|296050595|gb|EFG90018.1| putative NAD-dependent formate dehydrogenase, beta subunit [Clostridium carboxidivorans P7] Length = 584 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 36/98 (36%), Gaps = 15/98 (15%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 LRY FK + + K L Y + C C LC CPAQAI E Sbjct: 500 TTLRY-FKDEYIAHIKDHKCPAKQC----KKLLTYSIDPDVCKGCTLCARKCPAQAIEGE 554 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + ID KCI CG C C +A++ Sbjct: 555 TKKAHK----------IDQQKCIKCGNCMTVCKSNAVM 582 >gi|239908207|ref|YP_002954948.1| iron-sulfur binding protein [Desulfovibrio magneticus RS-1] gi|239798073|dbj|BAH77062.1| iron-sulfur binding protein [Desulfovibrio magneticus RS-1] Length = 375 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 11/82 (13%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 + + R+ ++CI C C A+CP A T++ ID CI CG Sbjct: 187 KQDQHCVRFVVEPKKCIGCAECVAVCPVGAATMQGKKAV-----------IDKATCIGCG 235 Query: 108 LCQEACPVDAIVEGPNFEFATE 129 C CP A+ E Sbjct: 236 ECLTVCPKKAMSIDWRTEIVPF 257 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 18/42 (42%) Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 + PR + VR+ ++ KCI C C CPV A Sbjct: 179 MGCAPRAGKQDQHCVRFVVEPKKCIGCAECVAVCPVGAATMQ 220 >gi|242279102|ref|YP_002991231.1| glutamate synthase (NADPH) [Desulfovibrio salexigens DSM 2638] gi|242121996|gb|ACS79692.1| Glutamate synthase (NADPH) [Desulfovibrio salexigens DSM 2638] Length = 508 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 27/85 (31%), Gaps = 15/85 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI CK+C C +A + R KC+ C C CP A+ Sbjct: 18 DPDLCIDCKVCIKQCSYEAHFWDDAREKVSHDSR---------KCVGCHRCAALCPTAAL 68 Query: 119 VEGPN---FEFATETRQEL---YYD 137 N F R E Y+ Sbjct: 69 TIKLNELDFRPNATWRPEFARNIYN 93 >gi|161503451|ref|YP_001570563.1| electron transport complex protein RnfC [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|189043392|sp|A9MRW8|RNFC_SALAR RecName: Full=Electron transport complex protein rnfC gi|160864798|gb|ABX21421.1| hypothetical protein SARI_01525 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 673 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 33/107 (30%), Gaps = 18/107 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E CI C C CPA + + G + + CI CG C CP Sbjct: 371 PQEETSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 427 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 N RQ E+ N R E + ++ R Sbjct: 428 -----SNIPLVQYFRQ------EKAEINAIRLEEK----RAAEAKAR 459 >gi|124027372|ref|YP_001012692.1| putative ATPase RIL [Hyperthermus butylicus DSM 5456] gi|123978066|gb|ABM80347.1| RNase L inhibitor, ATPase [Hyperthermus butylicus DSM 5456] Length = 613 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 26/81 (32%), Gaps = 4/81 (4%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 R E C C C A +G + + + I C+ CG+C + C Sbjct: 3 RIAVIDYELCKP-SKCHRECIAFCPVNLTGGKAIEFDEARRKPVIYEETCVGCGICVKKC 61 Query: 114 PVDAI---VEGPNFEFATETR 131 P AI E + R Sbjct: 62 PFKAISIVNLPDELEKSVIHR 82 >gi|324997613|ref|ZP_08118725.1| ferredoxin--NADP+ reductase [Pseudonocardia sp. P1] Length = 498 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 3/59 (5%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C C A CP I T ID CI CG C +ACPVDA+ Sbjct: 7 QTCCTDASCVAACPVNCIHPTPDEPD---YTTTDMLYIDPRACIDCGACADACPVDAVF 62 Score = 33.9 bits (76), Expect = 8.0, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 3/41 (7%) Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 + I C C ACPV+ I P+ T ++ Y Sbjct: 3 FAITQTCCTD-ASCVAACPVNCIHPTPDE--PDYTTTDMLY 40 >gi|301059322|ref|ZP_07200249.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] gi|300446551|gb|EFK10389.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] Length = 395 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 11/79 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 EE C C CE C A+ + + + + +CI CG+C CP +I Sbjct: 292 NEEACEGCGKCERSCQVDAVKVVEKGKSAV---------VSLDRCIGCGICVSKCPTGSI 342 Query: 119 VEGPN-FEFA-TETRQELY 135 E + +TR+EL Sbjct: 343 SLSKKSKEISPPQTREELL 361 >gi|257095915|ref|YP_003169556.1| RnfABCDGE type electron transport complex subunit C [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048439|gb|ACV37627.1| electron transport complex, RnfABCDGE type, C subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 508 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 27/119 (22%), Positives = 34/119 (28%), Gaps = 10/119 (8%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGEE---RCIACKLCEAICPAQAITIESGPRCHDGT 90 I P + G A CI C C CP + +E R Sbjct: 341 IVLPHARVPIVKGASGILAFDAAEARTPAAGPCIRCGSCTRACPMGLLPLEMASRIGVDD 400 Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF-----EFATETRQELYYDKERLLNN 144 + CI CG C CP I F E + R +L D R L + Sbjct: 401 LDGATG-FGLSDCIGCGCCAYVCPSH-IPLVQYFSYAKGELSARERSKLRNDATRRLAD 457 >gi|220932266|ref|YP_002509174.1| electron transport complex, RnfABCDGE type, B subunit [Halothermothrix orenii H 168] gi|219993576|gb|ACL70179.1| electron transport complex, RnfABCDGE type, B subunit [Halothermothrix orenii H 168] Length = 331 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/58 (43%), Positives = 27/58 (46%), Gaps = 11/58 (18%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 CI C +C +CP AITIE ID KCI CGLC E CP AI Sbjct: 217 CIGCGICARVCPVDAITIEDNLAV-----------IDYDKCINCGLCAEKCPTGAIEF 263 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 5/78 (6%) Query: 59 GEERCIACKLCEAICPAQAIT-----IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 ++C C C CP IT ++ RC V + + CI CG+C C Sbjct: 168 NYDKCTGCGKCVEACPRGIITLAPLSGKNHIRCSSHDHGKVVKGVCEVGCIGCGICARVC 227 Query: 114 PVDAIVEGPNFEFATETR 131 PVDAI N + Sbjct: 228 PVDAITIEDNLAVIDYDK 245 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 24/60 (40%), Gaps = 9/60 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++CI C LC CP AI E KC+ C C ACPVDAI Sbjct: 242 DYDKCINCGLCAEKCPTGAIEFEGRRIEEI---------HITDKCVGCTRCARACPVDAI 292 Score = 40.1 bits (92), Expect = 0.096, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 26/88 (29%), Gaps = 10/88 (11%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 P E + C+ C A+CP AI + Sbjct: 114 RQPAEYMGIESCKAANMVNGGTKACQYGCLGLGDCVAVCPFDAIEMNENGLPE------- 166 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGP 122 ++ KC CG C EACP I P Sbjct: 167 ---VNYDKCTGCGKCVEACPRGIITLAP 191 Score = 35.5 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 11/66 (16%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-AIV 119 ++C+ C C CP AI + I+ C+ CG+C + C V AI Sbjct: 275 DKCVGCTRCARACPVDAIEGSLKEKHE----------INPETCVKCGICYDTCKVKGAIE 324 Query: 120 EGPNFE 125 E Sbjct: 325 VTYQVE 330 >gi|99078168|ref|YP_611426.1| formate dehydrogenase, alpha subunit [Ruegeria sp. TM1040] gi|99035306|gb|ABF62164.1| formate dehydrogenase alpha subunit [Ruegeria sp. TM1040] Length = 924 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 6/81 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI----DMIKCIYCGLCQEACP 114 + CI+C LC C + + G +DI C+ CG C +ACP Sbjct: 147 NLDACISCGLCVRACR-EVQVNDVIGMAGRGHNAYPTFDIADPMGESSCVACGECVQACP 205 Query: 115 VDAIVE-GPNFEFATETRQEL 134 A++ E R++ Sbjct: 206 TGALMPATVVDENQVGDRKDF 226 >gi|303246786|ref|ZP_07333063.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Desulfovibrio fructosovorans JJ] gi|302491803|gb|EFL51683.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Desulfovibrio fructosovorans JJ] Length = 776 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 20/61 (32%), Gaps = 6/61 (9%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C +C ICP AI+ KCI CG C ACP Sbjct: 718 CRDCGVCTMICPTGAISRNQLEDKEFEMVSD------PAKCIGCGFCANACPCGVWSLVE 771 Query: 123 N 123 N Sbjct: 772 N 772 >gi|169333719|ref|ZP_02860912.1| hypothetical protein ANASTE_00103 [Anaerofustis stercorihominis DSM 17244] gi|169259568|gb|EDS73534.1| hypothetical protein ANASTE_00103 [Anaerofustis stercorihominis DSM 17244] Length = 256 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 11/90 (12%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 E +CI C LC+ CP I +E I ++C+YCG C+ C Sbjct: 3 HMIEVDENKCIGCGLCKRDCPTANIKLEDKKA-----------KIITMECLYCGHCEAIC 51 Query: 114 PVDAIVEGPNFEFATETRQELYYDKERLLN 143 P +AI+ E + + +++ + + L++ Sbjct: 52 PKNAIILTGFDEKSEQYNEQVRLNPKELMD 81 >gi|168463130|ref|ZP_02697061.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195634204|gb|EDX52556.1| electron transport complex, RnfABCDGE type, B subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 192 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI + + + C C LC + CP I Sbjct: 113 DENNCIGCTKCIQACPVDAIIGAT----------RAMHTVMSDLCTGCNLCVDPCPTHCI 162 Query: 119 VEGPNFEFATETRQEL 134 P E + +L Sbjct: 163 ELRPVNETPDSWKWDL 178 Score = 35.5 bits (80), Expect = 2.6, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C C +ACPVDAI Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132 >gi|160933601|ref|ZP_02080989.1| hypothetical protein CLOLEP_02455 [Clostridium leptum DSM 753] gi|156867478|gb|EDO60850.1| hypothetical protein CLOLEP_02455 [Clostridium leptum DSM 753] Length = 1188 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 30/118 (25%), Gaps = 24/118 (20%) Query: 29 KAKTTINYPFEKGSTSPRF-----RGEHALRRYPNGEERCIACKLCEAICPAQ------- 76 K + P G+ RG N + CI C C +CP Sbjct: 658 KLPVSTFMPHVDGTAPQGSSAFEKRGIAVDVPEWN-PQNCIQCNFCSYVCPHAVIRPVAM 716 Query: 77 -------AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP----VDAIVEGPN 123 A I + C CG C + CP A+V P Sbjct: 717 TADELAAAPEGTKSKDMTGVPGMKFVMTISTLDCTGCGSCAQVCPGMKGEKALVMKPI 774 >gi|323345696|ref|ZP_08085919.1| pyruvate-ferredoxin oxidoreductase [Prevotella oralis ATCC 33269] gi|323093810|gb|EFZ36388.1| pyruvate-ferredoxin oxidoreductase [Prevotella oralis ATCC 33269] Length = 1191 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 24/82 (29%), Gaps = 16/82 (19%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIE---------------SGPRCHDGTRR 92 RG A E CI C C +CP I Sbjct: 680 RGVEAFNPEWT-AENCIQCNKCAYVCPHACIRPFVLDEEEVKTFEDKTLEMKVPKTMAGM 738 Query: 93 TVRYDIDMIKCIYCGLCQEACP 114 R + ++ C+ CG C + CP Sbjct: 739 HFRIQVSVLDCVGCGNCADVCP 760 >gi|304438798|ref|ZP_07398725.1| electron transport complex protein RnfB [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372721|gb|EFM26300.1| electron transport complex protein RnfB [Peptoniphilus duerdenii ATCC BAA-1640] Length = 315 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 31/84 (36%), Gaps = 11/84 (13%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P+++ + F + CI C +CE CP AI + Sbjct: 199 PYKQKTEVKCFSKDAGKEVRTYCSNGCIGCGICEKKCPKDAIHVTDNLAA---------- 248 Query: 97 DIDMIKCIYCGLCQEACPVDAIVE 120 ID KCI CG+C CP AI Sbjct: 249 -IDYTKCINCGICVANCPTGAIFC 271 >gi|261252995|ref|ZP_05945568.1| iron-sulfur cluster-binding protein [Vibrio orientalis CIP 102891] gi|260936386|gb|EEX92375.1| iron-sulfur cluster-binding protein [Vibrio orientalis CIP 102891] Length = 553 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 10/84 (11%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + C C C A+CP +A+ + + CI CGLC +ACP Sbjct: 415 CESKDCTLCMSCVAVCPTRALHTDGS---------SPSLQFIEQDCIQCGLCTKACPEQV 465 Query: 118 IVEGPNFEFATETRQEL-YYDKER 140 + + +RQ+ +E+ Sbjct: 466 LSMTSRMNWDKTSRQQAQVIHQEK 489 Score = 40.1 bits (92), Expect = 0.12, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 6/54 (11%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 C+ C CPA A++ E + R +I+ C G C ACP +AI Sbjct: 186 CERCVDACPAGALSSEGSDKTGH------RIEINPYLCQGVGTCATACPTEAIH 233 >gi|253579276|ref|ZP_04856546.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849374|gb|EES77334.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 505 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQ 110 E+ CI C C CP AI + P G+ R +ID KC+ CG C Sbjct: 144 HIDEDACIKCGKCLEACPYNAIIKQERPCSKACGMNAIGSDEYGRAEIDQDKCVSCGQCL 203 Query: 111 EACPVDAI 118 +CP AI Sbjct: 204 VSCPFSAI 211 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/117 (21%), Positives = 41/117 (35%), Gaps = 9/117 (7%) Query: 10 FLFLKEFVGA--FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER-CIAC 66 +FL+ V + + + T + P KG + ++ N + C +C Sbjct: 50 SIFLERAVVGERLRVAMGMSLRK-VTEHAPISKGVEASVIEEKYYEPPLINVIKFACNSC 108 Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYD-----IDMIKCIYCGLCQEACPVDAI 118 + P ++ V + ID CI CG C EACP +AI Sbjct: 109 PEKRVMITEGCQGCLEHPCVEVCPKKAVHMEGGRSHIDEDACIKCGKCLEACPYNAI 165 >gi|149913158|ref|ZP_01901692.1| formate dehydrogenase, alpha subunit [Roseobacter sp. AzwK-3b] gi|149813564|gb|EDM73390.1| formate dehydrogenase, alpha subunit [Roseobacter sp. AzwK-3b] Length = 927 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 32/92 (34%), Gaps = 9/92 (9%) Query: 33 TINYPF-EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T +P EK A+R + CI C LC C + G Sbjct: 123 TSRFPKLEKERIPLLDDSHVAMRV---NLDACIQCNLCVRACR-DVQVNDVIGMAGRGHD 178 Query: 92 RTVRYD----IDMIKCIYCGLCQEACPVDAIV 119 +D + C+ CG C +ACP A++ Sbjct: 179 AYPVFDFADPMGESTCVACGECVQACPTGALM 210 >gi|13022069|gb|AAK11625.1|AF331719_1 [Fe] hydrogenase large subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 421 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 30/81 (37%), Gaps = 14/81 (17%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 L E+CI C C+ CP AI ++G CI CG C Sbjct: 24 ELFFIQIDPEKCIGCDTCQEYCPTGAIFGDTGSAHSIPH---------EEICINCGQCLT 74 Query: 112 ACPVDAIVEGPNFEFATETRQ 132 CPV AI +E + R+ Sbjct: 75 HCPVGAI-----YEVQSWVRE 90 Score = 40.5 bits (93), Expect = 0.075, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 16/42 (38%) Query: 78 ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 ++ P ID KCI C CQE CP AI Sbjct: 10 QYVDQSPDPRANPDELFFIQIDPEKCIGCDTCQEYCPTGAIF 51 >gi|238792247|ref|ZP_04635882.1| Pyruvate-flavodoxin oxidoreductase [Yersinia intermedia ATCC 29909] gi|238728484|gb|EEQ20003.1| Pyruvate-flavodoxin oxidoreductase [Yersinia intermedia ATCC 29909] Length = 1178 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 36/144 (25%), Gaps = 36/144 (25%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A + C C C A C Sbjct: 646 MLAGLGDAL------PVSAFPPDGTWPVGTTQWEKRNIAENIPIWQPDLCTQCNHCVAAC 699 Query: 74 PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP- 114 P A +++ R G + + C C LC E CP Sbjct: 700 PHSAIRAKVVQPEAMSGAPDSLQSLDVKARDMRGQKY--VLQVAPEDCTGCNLCYEVCPA 757 Query: 115 -------VDAIVEGPNFEFATETR 131 V AI P E E + Sbjct: 758 KDRQNPEVKAINMQPRLEHLVEEK 781 >gi|329898085|ref|ZP_08272294.1| Electron transport complex protein RnfC [gamma proteobacterium IMCC3088] gi|328920957|gb|EGG28382.1| Electron transport complex protein RnfC [gamma proteobacterium IMCC3088] Length = 574 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 43/126 (34%), Gaps = 4/126 (3%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93 + P K + + L + CI C C +CPA + + Sbjct: 338 LRVPIVKTTNCILAPSKTELASDTQ-SQPCIRCGHCADVCPASLLPQQLYWYAKS-QNHE 395 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIV 153 ++ CI CG C CP A+ + A +E ++ + R+E+ + Sbjct: 396 QLDAHNLADCIECGACAYVCP-SALPLVQFYRAAKAEIKEKSIEQRQADIAKTRFEARLA 454 Query: 154 RNIVTD 159 R + D Sbjct: 455 R-LERD 459 >gi|310827928|ref|YP_003960285.1| hypothetical protein ELI_2339 [Eubacterium limosum KIST612] gi|308739662|gb|ADO37322.1| hypothetical protein ELI_2339 [Eubacterium limosum KIST612] Length = 275 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 36/112 (32%), Gaps = 27/112 (24%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P ++ T R L C CKLC +CP +I+ + Sbjct: 183 QPRDRKGTPVDIRKVKPLTDD-----TCTDCKLCSEVCPMGSISHDD------------- 224 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDR 147 I CI CG C + CPV A ++ A Y K L R Sbjct: 225 VQIYTGICIKCGACIKKCPVHARY----YDDAGY-----LYHKHELEEGLKR 267 >gi|303327153|ref|ZP_07357595.1| pyridine nucleotide-disulfide oxidoreductase [Desulfovibrio sp. 3_1_syn3] gi|302863141|gb|EFL86073.1| pyridine nucleotide-disulfide oxidoreductase [Desulfovibrio sp. 3_1_syn3] Length = 764 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 23/72 (31%), Gaps = 1/72 (1%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 L R RC++C C C + + Y D +CI CG+C Sbjct: 690 ELPRPLEDHARCVSCGTCRD-CEMCLKSCPEKAIDRNELSGGFEYVSDPARCIGCGICAG 748 Query: 112 ACPVDAIVEGPN 123 CP N Sbjct: 749 VCPCGVWAMRDN 760 >gi|261820252|ref|YP_003258358.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Pectobacterium wasabiae WPP163] gi|261604265|gb|ACX86751.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Pectobacterium wasabiae WPP163] Length = 1177 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 39/143 (27%), Gaps = 25/143 (17%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P T + + A + C C C A C Sbjct: 646 MLAGLGDTL------PVSALPPDGTWPTGTTKWEKRNIAEEIPLWQPQLCTQCNHCVAAC 699 Query: 74 PAQAIT--------IESGP--------RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 P AI +E+ P + D + + C C LC E CP Sbjct: 700 PHSAIRAKVVQPDAMENAPASLQSLDVKARDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 118 IVEGPNFEFATETR-QELYYDKE 139 E+R L +KE Sbjct: 760 RQNPEIKAINMESRLDNLTAEKE 782 >gi|253687099|ref|YP_003016289.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753677|gb|ACT11753.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 1177 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 39/143 (27%), Gaps = 25/143 (17%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P T + + A + C C C A C Sbjct: 646 MLAGLGDTL------PVSALPPDGTWPTGTTKWEKRNIAEEIPLWQPQLCTQCNHCVAAC 699 Query: 74 PAQAIT--------IESGP--------RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 P AI +E+ P + D + + C C LC E CP Sbjct: 700 PHSAIRAKVVQPDAMENAPASLQSLDVKARDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 118 IVEGPNFEFATETR-QELYYDKE 139 E+R L +KE Sbjct: 760 RQNPEIKAINMESRLDNLTAEKE 782 >gi|227326333|ref|ZP_03830357.1| pyruvate-flavodoxin oxidoreductase [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 1177 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 39/143 (27%), Gaps = 25/143 (17%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P T + + A + C C C A C Sbjct: 646 MLAGLGDTL------PVSALPPDGTWPTGTTKWEKRNIAEEIPLWQPQLCTQCNHCVAAC 699 Query: 74 PAQAIT--------IESGP--------RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 P AI +E+ P + D + + C C LC E CP Sbjct: 700 PHSAIRAKVVQPDAMENAPASLQSLDVKARDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 118 IVEGPNFEFATETR-QELYYDKE 139 E+R L +KE Sbjct: 760 RQNPEIKAINMESRLDNLTAEKE 782 >gi|170759049|ref|YP_001788076.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum A3 str. Loch Maree] gi|169406038|gb|ACA54449.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum A3 str. Loch Maree] Length = 1192 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 24/88 (27%), Gaps = 16/88 (18%) Query: 51 HALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY 96 A+ ++CI C C +CP A Sbjct: 677 IAINVPEWQLDKCIQCNQCSYVCPHAVIRPVLLSDEEAKNAPKGFESKPAAGAKGLNFTM 736 Query: 97 DIDMIKCIYCGLCQEACP--VDAIVEGP 122 I C CG C + CP A++ P Sbjct: 737 AISPYDCTGCGNCADVCPAKEKALIMKP 764 >gi|146306434|ref|YP_001186899.1| electron transport complex protein RnfC [Pseudomonas mendocina ymp] gi|145574635|gb|ABP84167.1| electron transport complex, RnfABCDGE type, C subunit [Pseudomonas mendocina ymp] Length = 944 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 2/98 (2%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 CI C C CPA + + G ++ CI CG C CP +I Sbjct: 371 PCIRCGECAEACPAS-LLPQQLHFFALGQEHEQLKAHNLFDCIECGACAYVCP-SSIPLV 428 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 + A +EL + + ++ R+E R + Sbjct: 429 QYYRAAKAEIRELEQKQLKAEHSKQRFEQRQERLRRAE 466 >gi|15644047|ref|NP_229096.1| iron-sulfur cluster-binding protein, putative [Thermotoga maritima MSB8] gi|170289310|ref|YP_001739548.1| cobyrinic acid ac-diamide synthase [Thermotoga sp. RQ2] gi|4981850|gb|AAD36366.1|AE001784_8 iron-sulfur cluster-binding protein, putative [Thermotoga maritima MSB8] gi|170176813|gb|ACB09865.1| Cobyrinic acid ac-diamide synthase [Thermotoga sp. RQ2] Length = 283 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 25/76 (32%), Gaps = 11/76 (14%) Query: 47 FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 F L CI C C + C AI++ + C C Sbjct: 54 FEEPVHLMIPVVDNSVCIRCGECASTCQFGAISVFPSGTF-----------VFESLCHGC 102 Query: 107 GLCQEACPVDAIVEGP 122 G C CPV+AI E P Sbjct: 103 GACSIMCPVNAISERP 118 >gi|50119767|ref|YP_048934.1| pyruvate-flavodoxin oxidoreductase [Pectobacterium atrosepticum SCRI1043] gi|49610293|emb|CAG73737.1| pyruvate-flavodoxin oxidoreductase [Pectobacterium atrosepticum SCRI1043] Length = 1177 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 39/143 (27%), Gaps = 25/143 (17%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P T + + A + C C C A C Sbjct: 646 MLAGLGDTL------PVSALPPDGTWPTGTTKWEKRNIAEEIPLWQPQLCTQCNHCVAAC 699 Query: 74 PAQAIT--------IESGP--------RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 P AI +E+ P + D + + C C LC E CP Sbjct: 700 PHSAIRAKVVQPDAMENAPASLQSLDVKARDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 118 IVEGPNFEFATETR-QELYYDKE 139 E+R L +KE Sbjct: 760 RQNPEIKAINMESRLDNLTAEKE 782 >gi|15669355|ref|NP_248160.1| formylmethanofuran dehydrogenase subunit FwdF [Methanocaldococcus jannaschii DSM 2661] gi|47115673|sp|Q58566|FWDF_METJA RecName: Full=Polyferredoxin protein fwdF gi|1591792|gb|AAB99168.1| formylmethanofuran dehydrogenase, subunit F (tungsten) (fwdF) [Methanocaldococcus jannaschii DSM 2661] Length = 355 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 33/72 (45%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 GE R +E C+ C +C ICP AI + G + DID C+ CG+ Sbjct: 19 GEVEKRELCWNDELCVGCGICADICPVNAIAMGPLGAIAKGDIIAPKLDIDKDVCVLCGM 78 Query: 109 CQEACPVDAIVE 120 C ACP DA+ Sbjct: 79 CASACPFDALDL 90 Score = 47.8 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 1/77 (1%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R R +++C+ C+ CE +CP AI +E +I+ KC+ CG Sbjct: 102 RYPKIKRDIKVYQDKCVLCEQCEMVCPQGAIVVE-RELAEREKFVIGEININKEKCVLCG 160 Query: 108 LCQEACPVDAIVEGPNF 124 +C E CP DAI N+ Sbjct: 161 ICAEYCPADAINLKYNY 177 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 35/71 (49%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R + + +E+C+ C +C CPA AI ++ + ++D KC++C Sbjct: 141 REKFVIGEININKEKCVLCGICAEYCPADAINLKYNYPTPSNPKPITDIEVDKDKCVFCK 200 Query: 108 LCQEACPVDAI 118 +C+ CP DAI Sbjct: 201 VCEFVCPHDAI 211 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 8/83 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P E F+GE + C AC C +ICP A+ P+ D + R Sbjct: 254 CPAEAIEVEKPFKGELII-----DVNACNACGACISICPCSALEF---PKPKDKAEKVPR 305 Query: 96 YDIDMIKCIYCGLCQEACPVDAI 118 ++ C+ CG C +ACPV+AI Sbjct: 306 IIVNQNLCVLCGACAKACPVNAI 328 Score = 41.6 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 39/106 (36%), Gaps = 5/106 (4%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA----ITIESGPRCHDGTRRTVR 95 G +G+ + ++ C+ C +C + CP A I +S + Sbjct: 50 MGPLGAIAKGDIIAPKLDIDKDVCVLCGMCASACPFDALDLKINGKSIKEDERYPKIKRD 109 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNF-EFATETRQELYYDKER 140 + KC+ C C+ CP AIV E E+ +KE+ Sbjct: 110 IKVYQDKCVLCEQCEMVCPQGAIVVERELAEREKFVIGEININKEK 155 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 8/80 (10%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD--------IDMIKCI 104 + +++C+ CK+CE +CP AI + + ID C+ Sbjct: 186 ITDIEVDKDKCVFCKVCEFVCPHDAIEVICYKCPMMKRIPQAKLYEDITGKTVIDKDACV 245 Query: 105 YCGLCQEACPVDAIVEGPNF 124 CG C CP +AI F Sbjct: 246 TCGWCAFICPAEAIEVEKPF 265 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 8/62 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ C+ C C ICPA+AI +E + ID+ C CG C CP A+ Sbjct: 240 DKDACVTCGWCAFICPAEAIEVEKPFKGEL--------IIDVNACNACGACISICPCSAL 291 Query: 119 VE 120 Sbjct: 292 EF 293 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 11/22 (50%), Positives = 15/22 (68%) Query: 101 IKCIYCGLCQEACPVDAIVEGP 122 C+ CG+C + CPV+AI GP Sbjct: 31 ELCVGCGICADICPVNAIAMGP 52 >gi|312621650|ref|YP_004023263.1| dihydroorotate dehydrogenase family protein [Caldicellulosiruptor kronotskyensis 2002] gi|312202117|gb|ADQ45444.1| dihydroorotate dehydrogenase family protein [Caldicellulosiruptor kronotskyensis 2002] Length = 381 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 12/67 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E+C +C C +C AI + G + C CGLC E CP AI Sbjct: 326 DKEKCTSCGKCFTVCIYDAIEKDDGKFKVN------------QNCDGCGLCAELCPTKAI 373 Query: 119 VEGPNFE 125 E Sbjct: 374 SMVRRGE 380 >gi|283785156|ref|YP_003365021.1| electron transport complex protein [Citrobacter rodentium ICC168] gi|282948610|emb|CBG88201.1| electron transport complex protein [Citrobacter rodentium ICC168] Length = 678 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 37/112 (33%), Gaps = 9/112 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEKGCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVTDSP 161 I F E A +++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAISQEEKRAAEAKARFEARQARLEREKAARLERHKK 480 >gi|224373439|ref|YP_002607811.1| NADH dehydrogenase subunit i [Nautilia profundicola AmH] gi|223589330|gb|ACM93066.1| NADH dehydrogenase subunit i [Nautilia profundicola AmH] Length = 194 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 9/72 (12%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103 SP FRG H ++ C C+ C ICP AI +E P R ++++ C Sbjct: 34 SPIFRGMHEIKYD-----ICTGCEACAKICPVDAIVMEPLPIK----RPKALPEVNLGIC 84 Query: 104 IYCGLCQEACPV 115 I+CGLC++ CP Sbjct: 85 IFCGLCEDVCPT 96 Score = 38.5 bits (88), Expect = 0.31, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 18/46 (39%) Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 A + H ++I C C C + CPVDAIV P Sbjct: 22 ATKDVTKDTMHHSPIFRGMHEIKYDICTGCEACAKICPVDAIVMEP 67 >gi|254503835|ref|ZP_05115986.1| dihydroorotate dehydrogenase family protein [Labrenzia alexandrii DFL-11] gi|222439906|gb|EEE46585.1| dihydroorotate dehydrogenase family protein [Labrenzia alexandrii DFL-11] Length = 437 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 6/76 (7%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 + + + + ++ CI C C C + ++ DG R+ D +C+ Sbjct: 329 QHLNLNYIAKAKIDQDLCIQCGRCHIACED--TSHQAITNMVDGARKFEVID---EECVG 383 Query: 106 CGLCQEACPV-DAIVE 120 C LC CPV + I Sbjct: 384 CNLCVNVCPVENCITM 399 >gi|51245624|ref|YP_065508.1| polyferredoxins [Desulfotalea psychrophila LSv54] gi|50876661|emb|CAG36501.1| related to polyferredoxins [Desulfotalea psychrophila LSv54] Length = 628 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 35/89 (39%), Gaps = 15/89 (16%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 E C C C +C A+ E+ + C+ CGLC CP +A Sbjct: 504 CDNESCTQCMSCINVCQIGAMKTEATEMILS---------HNGSICVGCGLCVSICPENA 554 Query: 118 IVEGPNFEFATETRQELYYDKERLLNNGD 146 + ++F+ E ++ +RLL G+ Sbjct: 555 LQMSRAWQFS-----EAFFS-DRLLAAGE 577 Score = 38.2 bits (87), Expect = 0.36, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 20/60 (33%), Gaps = 14/60 (23%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RC C C CP + I+ D C +C C+E CP AI Sbjct: 177 DSSRCTYCGQCGITCPEKCISH--------------SLQFDFSACTFCKKCEEICPQGAI 222 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 12/54 (22%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 C+LC C +AI ++ G I+ ++C CG C ACP A+ Sbjct: 293 CRLCADACQYEAIDLKGG------------VSINPLRCEECGDCVAACPTGALQ 334 Score = 34.7 bits (78), Expect = 3.9, Method: Composition-based stats. Identities = 10/27 (37%), Positives = 13/27 (48%) Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFA 127 +C YCG C CP I F+F+ Sbjct: 179 SRCTYCGQCGITCPEKCISHSLQFDFS 205 >gi|325967922|ref|YP_004244114.1| 2-Ketoisovalerate:ferredoxin oxidoreductase (VOR),delta subunit [Vulcanisaeta moutnovskia 768-28] gi|323707125|gb|ADY00612.1| 2-Ketoisovalerate:ferredoxin oxidoreductase (VOR),delta subunit [Vulcanisaeta moutnovskia 768-28] Length = 91 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 24/75 (32%), Gaps = 10/75 (13%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G + R +C C +C CP I I+ C CG+ Sbjct: 24 GTWRVYRPVVNYSKCTKCGICWLYCPENVIEWLEDKNIK----------INYDYCKGCGI 73 Query: 109 CQEACPVDAIVEGPN 123 C + CPV AI Sbjct: 74 CADVCPVKAIDMVKE 88 >gi|315302196|ref|ZP_07873119.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Listeria ivanovii FSL F6-596] gi|313629436|gb|EFR97646.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Listeria ivanovii FSL F6-596] Length = 1216 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 32/95 (33%), Gaps = 20/95 (21%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTV 94 AL E C C C +CP AI + R DG R Sbjct: 680 IALEIPEWISENCTMCNECAFVCPHAAIRPILTDEEEMEEAPEGFMTREMRGKDGLRY-- 737 Query: 95 RYDIDMIKCIYCGLCQEACP--VDAIVEGPNFEFA 127 R + + C C LC E CP A+V P E A Sbjct: 738 RIQVSPMDCTGCNLCAETCPAKEKALVMRPFEEVA 772 >gi|271500636|ref|YP_003333661.1| RnfABCDGE type electron transport complex subunit C [Dickeya dadantii Ech586] gi|270344191|gb|ACZ76956.1| electron transport complex, RnfABCDGE type, C subunit [Dickeya dadantii Ech586] Length = 759 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 1/61 (1%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + E+ CI C C CPA + + G + CI CG C C Sbjct: 369 IQVQEEEQACIRCSKCADACPAG-LLPQQLYWFSRGQEHEKARQHHLFDCIECGACAYVC 427 Query: 114 P 114 P Sbjct: 428 P 428 >gi|150400807|ref|YP_001324573.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanococcus aeolicus Nankai-3] gi|150013510|gb|ABR55961.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus aeolicus Nankai-3] Length = 250 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/76 (32%), Positives = 31/76 (40%), Gaps = 10/76 (13%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 L Y E+CI C LC+ CP AIT+E R +DID+ KC+ C Sbjct: 118 HRTIKLNNYHIDVEKCIFCGLCDKFCPTNAITVE----------RRKSFDIDLNKCVGCN 167 Query: 108 LCQEACPVDAIVEGPN 123 C CP I Sbjct: 168 ACASVCPKKIITVDNE 183 Score = 41.2 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 15/74 (20%) Query: 60 EERCIACKLCEAICPAQ---------------AITIESGPRCHDGTRRTVRYDIDMIKCI 104 ++C+ C++C CP + T + Y ID+ KCI Sbjct: 75 PDKCVKCEICAMTCPVDTIKVLDANAKIENHSVVYTIKEQDTEHRTIKLNNYHIDVEKCI 134 Query: 105 YCGLCQEACPVDAI 118 +CGLC + CP +AI Sbjct: 135 FCGLCDKFCPTNAI 148 Score = 38.5 bits (88), Expect = 0.33, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 9/65 (13%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + + CI C LC CP AIT + + +I KC+ C +C C Sbjct: 38 KYICIVPDDCIRCNLCYIECPVDAITKPTVRKPA---------EIIPDKCVKCEICAMTC 88 Query: 114 PVDAI 118 PVD I Sbjct: 89 PVDTI 93 Score = 38.2 bits (87), Expect = 0.45, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 11/87 (12%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + + + + C+ C +C CP I + Sbjct: 173 CPKKIITVDNELGELPFNKSISVDNDVCVKCLVCVEECPINIIKEIAEGV---------- 222 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGP 122 +ID C+YCG C+ +CPV AI Sbjct: 223 -EIDKSNCMYCGRCEGSCPVHAIEIKN 248 >gi|154248925|ref|YP_001409750.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1] gi|154152861|gb|ABS60093.1| NADH dehydrogenase (quinone) [Fervidobacterium nodosum Rt17-B1] Length = 632 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 31/69 (44%), Gaps = 10/69 (14%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 A ++Y E+C +C LC CP AI+ E G Y ID KCI CGLC Sbjct: 572 AFKKYIIIPEKCKSCSLCARSCPNNAISGERGKP----------YVIDQDKCIKCGLCVT 621 Query: 112 ACPVDAIVE 120 C AI Sbjct: 622 KCKFGAIEL 630 >gi|1345094|gb|AAC47160.1| TvhydB protein [Trichomonas vaginalis] Length = 449 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 22/70 (31%), Gaps = 6/70 (8%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK------CIYCGLCQEA 112 +CI C+ C C A + ++ K CI CG C Sbjct: 25 DMHKCINCQACVRACKNVAGQSVLKSVKINEGKKKGVVQTVTGKLLAETNCIGCGQCTLV 84 Query: 113 CPVDAIVEGP 122 CP AI E Sbjct: 85 CPTQAIHEKD 94 >gi|52424975|ref|YP_088112.1| electron transport complex protein RnfC [Mannheimia succiniciproducens MBEL55E] gi|81691415|sp|Q65U33|RNFC_MANSM RecName: Full=Electron transport complex protein rnfC; AltName: Full=Nitrogen fixation protein rnfC gi|52307027|gb|AAU37527.1| NqrA protein [Mannheimia succiniciproducens MBEL55E] Length = 723 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 12/103 (11%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C CP + + + + CI CGLC CP I Sbjct: 376 QSCIRCSACSDACPVH-LMPQQLYWYARSEDHEKSEEYSLKDCIECGLCAYVCPSH-IPL 433 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 F RQE K ++ D+ + + ++ R Sbjct: 434 IQYF------RQE----KAKIWEIKDKAKKAEEAKLRFEAKQR 466 >gi|20094236|ref|NP_614083.1| bifunctional coenzyme F420-reducing hydrogenase subunit beta/oxidoreductase [Methanopyrus kandleri AV19] gi|19887267|gb|AAM02013.1| Coenzyme F420-reducing hydrogenase, beta subunit fused to oxidoreductase related to nitrite reductase [Methanopyrus kandleri AV19] Length = 668 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 25/75 (33%), Gaps = 6/75 (8%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 G R E+C C C C AI R + D D + Sbjct: 520 PQHHDLGFAGAVRPGVDPEKCTGCGQCVDACKVDAI------RIITVGGQAAVADTDYKR 573 Query: 103 CIYCGLCQEACPVDA 117 C+YCG C CP +A Sbjct: 574 CVYCGKCINVCPEEA 588 Score = 38.2 bits (87), Expect = 0.44, Method: Composition-based stats. Identities = 15/37 (40%), Positives = 17/37 (45%) Query: 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 G VR +D KC CG C +AC VDAI Sbjct: 521 QHHDLGFAGAVRPGVDPEKCTGCGQCVDACKVDAIRI 557 Score = 34.7 bits (78), Expect = 4.7, Method: Composition-based stats. Identities = 7/37 (18%), Positives = 11/37 (29%) Query: 87 HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + + ++ C CG C CP I Sbjct: 16 EEFEWKLTEEVVEPGACALCGTCVAICPGGIIELTDE 52 >gi|325960232|ref|YP_004291698.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanobacterium sp. AL-21] gi|325331664|gb|ADZ10726.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanobacterium sp. AL-21] Length = 347 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 26/84 (30%), Positives = 36/84 (42%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 K R R +E C+ C +CE+ICP AI + S + + Sbjct: 7 EVKAKDFNVERSAEEDRELSFKDESCVGCGVCESICPVGAIKLGSVGAIVRNDIDESKIE 66 Query: 98 IDMIKCIYCGLCQEACPVDAIVEG 121 ID KC+ CG+C CPVDA+ Sbjct: 67 IDEEKCVLCGMCSVGCPVDALEFT 90 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 28/86 (32%), Positives = 40/86 (46%), Gaps = 8/86 (9%) Query: 36 YPFEKGSTSPRFRGEHALRR--YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93 P E + + + L +E CI C +CE +CPA AITI+ Sbjct: 126 CPREAITVARQLPDRSKLVTGEIDIDKETCIDCGICEEMCPADAITIDQKGPEDFDIAVD 185 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIV 119 KC+YC +C++ACPVDAI+ Sbjct: 186 K------DKCVYCLVCKKACPVDAIM 205 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 28/80 (35%), Positives = 34/80 (42%), Gaps = 1/80 (1%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100 S + +E CI CK CE CP +AIT + T DID Sbjct: 94 TPISEIETYPKLISSAEIDDETCIYCKACERACPREAIT-VARQLPDRSKLVTGEIDIDK 152 Query: 101 IKCIYCGLCQEACPVDAIVE 120 CI CG+C+E CP DAI Sbjct: 153 ETCIDCGICEEMCPADAITI 172 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 29/83 (34%), Gaps = 3/83 (3%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 + E + ++C C C +CP + + ++ Sbjct: 241 WCEEVCPVDAAKVEKPFEGELSLDLDKCTTCGACVDVCPCDVLFFPKSSAPGTIDDKLMK 300 Query: 96 YDIDMIKCIYCGLCQEACPVDAI 118 D CIYCG C+ CPV+AI Sbjct: 301 ---DEQFCIYCGACENVCPVEAI 320 Score = 42.0 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 7/74 (9%) Query: 59 GEERCIACKLCEAICPAQA-------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 +++C+ C +C+ CP A + + T + ID C+ CG C+E Sbjct: 185 DKDKCVYCLVCKKACPVDAIMAACRTCSYGEYDLNPEDAETTGKALIDDDACVRCGWCEE 244 Query: 112 ACPVDAIVEGPNFE 125 CPVDA FE Sbjct: 245 VCPVDAAKVEKPFE 258 Score = 40.5 bits (93), Expect = 0.075, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 4/64 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRC----HDGTRRTVRYDIDMIKCIYCGLCQEACP 114 EE+C+ C +C CP A+ + +ID CIYC C+ ACP Sbjct: 68 DEEKCVLCGMCSVGCPVDALEFTVDGTPISEIETYPKLISSAEIDDETCIYCKACERACP 127 Query: 115 VDAI 118 +AI Sbjct: 128 REAI 131 >gi|312622572|ref|YP_004024185.1| nitrite and sulfite reductase 4Fe-4S region [Caldicellulosiruptor kronotskyensis 2002] gi|312203039|gb|ADQ46366.1| nitrite and sulphite reductase 4Fe-4S region [Caldicellulosiruptor kronotskyensis 2002] Length = 296 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 9/76 (11%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G + + C C LC+A+CP +AI I+ + + ID KC YCG Sbjct: 152 GIKGAVKPEWEKSSCTFCGLCQAVCPTKAIQIDE---------KNKKITIDRDKCTYCGR 202 Query: 109 CQEACPVDAIVEGPNF 124 C ++CP ++ P + Sbjct: 203 CVKSCPTNSWKGKPGY 218 Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 17/48 (35%), Gaps = 3/48 (6%) Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C + E G + + C +CGLCQ CP AI Sbjct: 139 CGNNCLKAEENDLGIKGAVKPEW---EKSSCTFCGLCQAVCPTKAIQI 183 >gi|237738276|ref|ZP_04568757.1| hydrogenase [Fusobacterium mortiferum ATCC 9817] gi|229420156|gb|EEO35203.1| hydrogenase [Fusobacterium mortiferum ATCC 9817] Length = 678 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 22/66 (33%), Gaps = 9/66 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C+ +C + ++ CI CG C CP +I Sbjct: 22 NESLCIKCGQCKEVC---------EKYIGVHNTYKLVDTNNIAVCINCGQCANVCPTSSI 72 Query: 119 VEGPNF 124 E + Sbjct: 73 TEKHEY 78 >gi|222054905|ref|YP_002537267.1| Electron transfer flavoprotein alpha subunit [Geobacter sp. FRC-32] gi|221564194|gb|ACM20166.1| Electron transfer flavoprotein alpha subunit [Geobacter sp. FRC-32] Length = 442 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 11/60 (18%) Query: 62 RCIACK-LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 +CIAC C++ CP AI + I+ KCI C C + CP AI Sbjct: 22 KCIACGARCQSSCPVDAIEMNEAGEPV----------INPDKCIGCVKCVKVCPAQAIEM 71 >gi|126465896|ref|YP_001041005.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Staphylothermus marinus F1] gi|126014719|gb|ABN70097.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Staphylothermus marinus F1] Length = 93 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 10/65 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +C+ C LCE CP I +E I+ C CG+C + CPV+AI Sbjct: 38 NNNKCVRCFLCEIYCPVNVIRVEPE----------TGVTINYDYCKGCGVCADVCPVNAI 87 Query: 119 VEGPN 123 P Sbjct: 88 ELVPE 92 >gi|157963951|ref|YP_001503985.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein [Shewanella pealeana ATCC 700345] gi|157848951|gb|ABV89450.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella pealeana ATCC 700345] Length = 559 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 30/75 (40%), Gaps = 9/75 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C C C A CP A+T G R + + C+ CGLC+ ACP I Sbjct: 425 NTENCTLCMSCVATCPTMALT-------DGGDRPALHFV--EQDCVQCGLCETACPEKVI 475 Query: 119 VEGPNFEFATETRQE 133 P F RQE Sbjct: 476 SLTPQVNFDKAARQE 490 Score = 38.2 bits (87), Expect = 0.37, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 11/53 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C CPA AI+ + +ID C G C ACP AI Sbjct: 196 CTRCLNFCPADAISSVAKK-----------IEIDPYLCHGAGSCTNACPTGAI 237 >gi|170729134|ref|YP_001763160.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein [Shewanella woodyi ATCC 51908] gi|169814481|gb|ACA89065.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella woodyi ATCC 51908] Length = 560 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 29/82 (35%), Gaps = 9/82 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C C + CP QA+T C+ CGLC+ ACP AI Sbjct: 426 NTQACTLCLSCVSTCPTQALTDGGDKPALH---------FVEQDCVQCGLCESACPEKAI 476 Query: 119 VEGPNFEFATETRQELYYDKER 140 F RQ+ KE Sbjct: 477 SLTSQMNFDKAERQKRQTLKEE 498 Score = 38.5 bits (88), Expect = 0.28, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 18/53 (33%), Gaps = 11/53 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C CPA AI +ID C G C ACP AI Sbjct: 202 CNRCLNFCPADAIQSID-----------KMIEIDPYLCHGAGSCTNACPTGAI 243 >gi|130071|sp|P13629|PHFL_DESVO RecName: Full=Periplasmic [Fe] hydrogenase large subunit; AltName: Full=Fe hydrogenlyase gi|145099|gb|AAA23373.1| [Fe]-hydrogenase alpha subunit [Desulfovibrio vulgaris] Length = 421 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 26/69 (37%), Gaps = 9/69 (13%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L E +CI C C+ CP AI ++G CI CG C Sbjct: 25 LFFIQIDESKCIGCDSCQQYCPTGAIFGDTGDAHKIPH---------EELCINCGQCLTH 75 Query: 113 CPVDAIVEG 121 CPV AI E Sbjct: 76 CPVGAIYES 84 Score = 40.1 bits (92), Expect = 0.10, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 16/42 (38%) Query: 78 ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + P + ID KCI C CQ+ CP AI Sbjct: 10 FYEDHAPDPKADPDKLFFIQIDESKCIGCDSCQQYCPTGAIF 51 >gi|325958129|ref|YP_004289595.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanobacterium sp. AL-21] gi|325329561|gb|ADZ08623.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanobacterium sp. AL-21] Length = 412 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 1/64 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 EE CI C +C CP A+ SG + ++ +++++D CI C LC E CP D I Sbjct: 173 DEETCIKCGVCSQTCPWNAVY-ISGKKPEKRSKNMLKFEVDENTCIGCNLCVEECPGDFI 231 Query: 119 VEGP 122 P Sbjct: 232 EPKP 235 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 22/65 (33%), Gaps = 1/65 (1%) Query: 60 EERCIACKLCEAICPAQAITI-ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C C CP A+TI E + R KC CG C + CP + + Sbjct: 322 FAMCTRCGACTTACPEGALTISEIDKVIDGKVVKRNRISFSPDKCTECGDCVDVCPYNML 381 Query: 119 VEGPN 123 Sbjct: 382 KLTGE 386 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C+ C+ C ICP + I +E I ++ C+ CG+C + CPVDAI Sbjct: 106 YCVMCQRCVDICPVEVIGVEGVKEPKHTDIDISGP-IAIVDCVGCGMCVDECPVDAITLD 164 Query: 122 PN 123 Sbjct: 165 EI 166 Score = 38.5 bits (88), Expect = 0.31, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 21/66 (31%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 E +C C ICP AI + + + C CG C ACP A Sbjct: 280 WDESKCDHIGACARICPTDAIRVVTNTGMEVPGDAKTGAEPSFAMCTRCGACTTACPEGA 339 Query: 118 IVEGPN 123 + Sbjct: 340 LTISEI 345 Score = 37.8 bits (86), Expect = 0.46, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 12/61 (19%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 ++C C C +CP + + G CI C C E CP DA+ Sbjct: 363 PDKCTECGDCVDVCPYNMLKLTGEKVPLKGY------------CILCDQCIEPCPKDALS 410 Query: 120 E 120 Sbjct: 411 M 411 Score = 37.8 bits (86), Expect = 0.50, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 26/64 (40%), Gaps = 1/64 (1%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 E C AC LCE +CP AI +E D KC + G C CP DAI Sbjct: 243 PEVCTACGLCEKLCPVDAIDLEVELGPSKPASEEGIVW-DESKCDHIGACARICPTDAIR 301 Query: 120 EGPN 123 N Sbjct: 302 VVTN 305 Score = 37.8 bits (86), Expect = 0.52, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 9/60 (15%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C+ C +C CP AIT++ ID CI CG+C + CP +A+ Sbjct: 145 DCVGCGMCVDECPVDAITLDE---------IGGSIAIDEETCIKCGVCSQTCPWNAVYIS 195 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 12/23 (52%), Positives = 12/23 (52%) Query: 101 IKCIYCGLCQEACPVDAIVEGPN 123 CI CG CQ ACP AI P Sbjct: 7 EDCIRCGACQGACPTAAIEVSPE 29 Score = 35.1 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 4/66 (6%) Query: 52 ALRRYPNGEERCIACK---LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 A+ P C C C ICP A+ E +G R + C CG Sbjct: 23 AIEVSPEDVIFCDVCGGAPKCVDICPKGALKTEEITVGENGVA-QARVAYNPALCDKCGD 81 Query: 109 CQEACP 114 C + CP Sbjct: 82 CIDVCP 87 Score = 33.9 bits (76), Expect = 7.2, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 9/61 (14%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 C C C +CP Q + ++ G C+ C C + CPV+ Sbjct: 71 YNPALCDKCGDCIDVCPPQVLKLDEGKVSKIPL---------EGYCVMCQRCVDICPVEV 121 Query: 118 I 118 I Sbjct: 122 I 122 >gi|261402918|ref|YP_003247142.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus vulcanius M7] gi|261369911|gb|ACX72660.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus vulcanius M7] Length = 356 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 35/72 (48%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G+ R +E C+ C +C ICP +AI + G + DID KC+ CG+ Sbjct: 19 GKIETRELLWNDEPCVGCGICADICPVEAIAMGPLGAIAKGDIIAPKLDIDEEKCVLCGM 78 Query: 109 CQEACPVDAIVE 120 C ACP +A+ Sbjct: 79 CASACPFNAMDL 90 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 35/71 (49%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R + + +E+C+ C +C CPA AI ++ + +++ KC+YC Sbjct: 141 RSKFVIGEVNINKEKCVLCGICADYCPADAIDLKYCYPTPSNPKPITDIEVNSDKCVYCK 200 Query: 108 LCQEACPVDAI 118 +C+ CP +AI Sbjct: 201 VCEFVCPHNAI 211 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R R +++C+ C+ CE +CP AI +E +I+ KC+ CG Sbjct: 102 RYPKIKRDIKISQDKCVLCEQCEMVCPQSAIEVEKTL-AERSKFVIGEVNINKEKCVLCG 160 Query: 108 LCQEACPVDAIVEGPNF 124 +C + CP DAI + Sbjct: 161 ICADYCPADAIDLKYCY 177 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 40/106 (37%), Gaps = 5/106 (4%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT----IESGPRCHDGTRRTVR 95 G +G+ + EE+C+ C +C + CP A+ +S + Sbjct: 50 MGPLGAIAKGDIIAPKLDIDEEKCVLCGMCASACPFNAMDLKINGKSIKEDERYPKIKRD 109 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNF-EFATETRQELYYDKER 140 I KC+ C C+ CP AI E + E+ +KE+ Sbjct: 110 IKISQDKCVLCEQCEMVCPQSAIEVEKTLAERSKFVIGEVNINKEK 155 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 8/83 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P E F+GE + + C AC C AICP A+ P D + R Sbjct: 254 CPAEAIEVEKPFKGEVII-----DVDACNACGACVAICPCGALEF---PMPKDKAEKVPR 305 Query: 96 YDIDMIKCIYCGLCQEACPVDAI 118 I+ C+ CG C +ACP++AI Sbjct: 306 LIINQNLCVLCGACSKACPINAI 328 Score = 38.2 bits (87), Expect = 0.44, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 31/80 (38%), Gaps = 8/80 (10%) Query: 53 LRRYPNGEERCIACKLCEAICPAQ--------AITIESGPRCHDGTRRTVRYDIDMIKCI 104 + ++C+ CK+CE +CP ++ P+ + +D C+ Sbjct: 186 ITDIEVNSDKCVYCKVCEFVCPHNAIEVICYKCPMMKRIPKAELYKDINGKTVVDKDACV 245 Query: 105 YCGLCQEACPVDAIVEGPNF 124 CG C CP +AI F Sbjct: 246 TCGWCAFICPAEAIEVEKPF 265 Score = 37.8 bits (86), Expect = 0.51, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 8/62 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ C+ C C ICPA+AI +E + ID+ C CG C CP A+ Sbjct: 240 DKDACVTCGWCAFICPAEAIEVEKPFKGE--------VIIDVDACNACGACVAICPCGAL 291 Query: 119 VE 120 Sbjct: 292 EF 293 Score = 35.5 bits (80), Expect = 2.5, Method: Composition-based stats. Identities = 11/20 (55%), Positives = 15/20 (75%) Query: 103 CIYCGLCQEACPVDAIVEGP 122 C+ CG+C + CPV+AI GP Sbjct: 33 CVGCGICADICPVEAIAMGP 52 >gi|218288562|ref|ZP_03492839.1| formate dehydrogenase, alpha subunit [Alicyclobacillus acidocaldarius LAA1] gi|218241219|gb|EED08394.1| formate dehydrogenase, alpha subunit [Alicyclobacillus acidocaldarius LAA1] Length = 986 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 5/80 (6%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDM 100 + + + Y +CI C C C ++ ++I+ I+ Sbjct: 132 KPYEVDMSHPFYRYDPSQCILCGRCVEACQNLQVSEVLSIDWDREIPRVIWDNDVP-INE 190 Query: 101 IKCIYCGLCQEACPVDAIVE 120 C+ CG C CP +A++E Sbjct: 191 SSCVSCGHCVTVCPCNALME 210 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 28/83 (33%), Gaps = 9/83 (10%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIAC----KLCEAICPAQAITIES-----GPRCHDGT 90 K + R E R N + C C C A+ I+ + ++ Sbjct: 78 KSVAARYARKEAMDRILKNHDLYCTVCDNNNGNCVVHNTTMAMDIDHQSYPFREKPYEVD 137 Query: 91 RRTVRYDIDMIKCIYCGLCQEAC 113 Y D +CI CG C EAC Sbjct: 138 MSHPFYRYDPSQCILCGRCVEAC 160 >gi|187735302|ref|YP_001877414.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Akkermansia muciniphila ATCC BAA-835] gi|187425354|gb|ACD04633.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Akkermansia muciniphila ATCC BAA-835] Length = 1192 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 25/88 (28%), Gaps = 16/88 (18%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHD 88 TS + AL CI C C A+CP A Sbjct: 682 TSQYEKRNLALDLPEWDPTLCIQCGKCTAVCPHAVIRSKFFSPDALANAPEGFECLDAKH 741 Query: 89 GTRRTVRY--DIDMIKCIYCGLCQEACP 114 + ++ I C C LC + CP Sbjct: 742 PDWKGEKFVIQISPNDCTGCTLCADVCP 769 Score = 33.9 bits (76), Expect = 6.6, Method: Composition-based stats. Identities = 8/19 (42%), Positives = 8/19 (42%) Query: 100 MIKCIYCGLCQEACPVDAI 118 CI CG C CP I Sbjct: 699 PTLCIQCGKCTAVCPHAVI 717 >gi|171185979|ref|YP_001794898.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Thermoproteus neutrophilus V24Sta] gi|170935191|gb|ACB40452.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Thermoproteus neutrophilus V24Sta] Length = 89 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 10/65 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +C+ C +C CP I E G + ID + C CG+C + CPV AI Sbjct: 33 DLAKCVDCGICWLYCPESVIEWEKGRKIA----------IDYMYCKGCGICADVCPVKAI 82 Query: 119 VEGPN 123 P Sbjct: 83 SMEPE 87 >gi|83644718|ref|YP_433153.1| electron transport complex protein RnfC [Hahella chejuensis KCTC 2396] gi|83632761|gb|ABC28728.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Hahella chejuensis KCTC 2396] Length = 821 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 41/102 (40%), Gaps = 10/102 (9%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEA 112 P+ + CI C LC CPA E P+ + +D ++ CI CG C Sbjct: 363 PDPAQACIRCGLCAEACPA-----ELLPQQLYWFSKAQEFDKAENYNLFDCIECGACSYV 417 Query: 113 CPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVR 154 CP +I + +A + ++++ +R+E R Sbjct: 418 CP-SSIPLVQYYRYAKHQIRMTVQEQQKSDKARERFEFRQAR 458 >gi|78355128|ref|YP_386577.1| ferredoxin hydrogenase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217533|gb|ABB36882.1| Ferredoxin hydrogenase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 421 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 30/81 (37%), Gaps = 14/81 (17%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 L E+CI C C+ CP AI ++G CI CG C Sbjct: 24 ELFFIQIDPEKCIGCDTCQEYCPTGAIFGDTGSAHSIPH---------EEICINCGQCLT 74 Query: 112 ACPVDAIVEGPNFEFATETRQ 132 CPV AI +E + R+ Sbjct: 75 HCPVGAI-----YEVQSWVRE 90 Score = 40.5 bits (93), Expect = 0.077, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 16/42 (38%) Query: 78 ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 ++ P ID KCI C CQE CP AI Sbjct: 10 QYVDQSPDPRANPDELFFIQIDPEKCIGCDTCQEYCPTGAIF 51 >gi|24375408|ref|NP_719451.1| periplasmic Fe hydrogenase, large subunit [Shewanella oneidensis MR-1] gi|24350246|gb|AAN56895.1|AE015824_6 periplasmic Fe hydrogenase, large subunit [Shewanella oneidensis MR-1] Length = 410 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +C C C+ CP AI SG + ID KC+ CG C CP AI Sbjct: 18 NASKCKGCDACKQFCPTHAINGASG----------AVHSIDEDKCLSCGQCLINCPFSAI 67 Query: 119 VEGP 122 E Sbjct: 68 EETH 71 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 9/22 (40%), Positives = 12/22 (54%) Query: 98 IDMIKCIYCGLCQEACPVDAIV 119 I+ KC C C++ CP AI Sbjct: 17 INASKCKGCDACKQFCPTHAIN 38 >gi|83309269|ref|YP_419533.1| FdhA-II protein [Magnetospirillum magneticum AMB-1] gi|82944110|dbj|BAE48974.1| FdhA-II protein [Magnetospirillum magneticum AMB-1] Length = 891 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 30/109 (27%), Gaps = 16/109 (14%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + GA + F P A+R CI C LC Sbjct: 105 FLGWAGALGVTASRF--------APSAAPVRPDTSHPAMAVRLD-----ACIHCTLCLRA 151 Query: 73 C---PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C + SG + C+ CG C +ACP A+ Sbjct: 152 CREVQVNDVIGMSGRGADSRITFDFAQSMGASSCVGCGECVQACPTGAL 200 >gi|312137197|ref|YP_004004534.1| 4fe-4S ferredoxin iron-sulfur binding domain protein [Methanothermus fervidus DSM 2088] gi|311224916|gb|ADP77772.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanothermus fervidus DSM 2088] Length = 341 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 35/71 (49%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R E +++CI C +CE +CPA AI IE +D KC+YC Sbjct: 131 RSELVTGEIEIDKDKCIFCGVCEEMCPAAAIEIEWKEPTSIDPSTANDIRVDEKKCVYCM 190 Query: 108 LCQEACPVDAI 118 +C+ CPV+AI Sbjct: 191 ICKRVCPVNAI 201 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 5/81 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-----DIDMIKCIYCGLCQEAC 113 E++C+ C +C+ +CP AI + + ID C+ CG CQE C Sbjct: 182 DEKKCVYCMICKRVCPVNAIKVICKVCPYGEYEIKEPEIKGSTYIDSELCVNCGWCQETC 241 Query: 114 PVDAIVEGPNFEFATETRQEL 134 PVDAI FE E +EL Sbjct: 242 PVDAIKIEKPFEGTVEINEEL 262 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 3/87 (3%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 + E + EE C C C +CP A++ P+ Sbjct: 232 VNCGWCQETCPVDAIKIEKPFEGTVEINEELCQGCATCVEVCPCNALSF---PKPSKPGE 288 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAI 118 + + I+ C+YCG C++ACP DAI Sbjct: 289 KPQKLHIEEKFCVYCGACEKACPTDAI 315 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 5/87 (5%) Query: 59 GEERCIACKLCEAICPAQAITIESGPR----CHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 E++C+ C +C +ICP A+ ++ + + +ID KCIYC C+ CP Sbjct: 59 DEDKCVLCGMCSSICPYDALDLQIDKKSIKDIPEYPTLIKSSEIDEEKCIYCKSCEIVCP 118 Query: 115 VDAIVEGPNF-EFATETRQELYYDKER 140 AI E + E+ DK++ Sbjct: 119 QGAITITRELPERSELVTGEIEIDKDK 145 Score = 40.1 bits (92), Expect = 0.097, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 8/64 (12%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E C+ C C+ CP AI IE +I+ C C C E CP + Sbjct: 225 YIDSELCVNCGWCQETCPVDAIKIEK--------PFEGTVEINEELCQGCATCVEVCPCN 276 Query: 117 AIVE 120 A+ Sbjct: 277 ALSF 280 Score = 37.4 bits (85), Expect = 0.62, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 1/74 (1%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R R EE+C C LCE ICP AI + P + +D KC+ CG Sbjct: 9 RSGKETRELIFNEEKCNVCGLCEKICPVNAIEVSP-PGAVVREENISKLILDEDKCVLCG 67 Query: 108 LCQEACPVDAIVEG 121 +C CP DA+ Sbjct: 68 MCSSICPYDALDLQ 81 >gi|307721745|ref|YP_003892885.1| NADH dehydrogenase subunit G [Sulfurimonas autotrophica DSM 16294] gi|306979838|gb|ADN09873.1| NADH dehydrogenase subunit G [Sulfurimonas autotrophica DSM 16294] Length = 747 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 24/66 (36%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 CI C+ C +C + + + + + + C +CG C CPV Sbjct: 142 NYDPALCIMCEKCVHVCNEVIGDDAIEVKFGGYSSVIIPKNAETLDCTFCGECIAVCPVG 201 Query: 117 AIVEGP 122 A+V Sbjct: 202 ALVSSD 207 >gi|304394558|ref|ZP_07376477.1| dihydropyrimidine dehydrogenase [NADP+] [Ahrensia sp. R2A130] gi|303293219|gb|EFL87600.1| dihydropyrimidine dehydrogenase [NADP+] [Ahrensia sp. R2A130] Length = 437 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 6/81 (7%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + +++CI+C C C + ++ DG R +++ +C+ Sbjct: 330 QYLNLNYVTKAQIDQDKCISCGRCHIACED--TSHQAITNIVDGKR---HFEVIDEECVG 384 Query: 106 CGLCQEACPV-DAIVEGPNFE 125 C LC CPV D I E Sbjct: 385 CNLCVNVCPVEDCITMVEMAE 405 >gi|303242578|ref|ZP_07329055.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2] gi|302589882|gb|EFL59653.1| NADH dehydrogenase (quinone) [Acetivibrio cellulolyticus CD2] Length = 624 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 27/99 (27%), Positives = 38/99 (38%), Gaps = 15/99 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 ++ F+ + + ++ T L+R C C C ICP AI+ Sbjct: 541 TIKN-FREEYEAHIREKRCPTGNC----QKLKRITIEAALCKGCSKCSRICPVNAISG-- 593 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 + Y ID KCI CG C +C AIVEG Sbjct: 594 --------KVKEPYVIDQSKCIKCGACVGSCAFHAIVEG 624 >gi|269139125|ref|YP_003295826.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Edwardsiella tarda EIB202] gi|267984786|gb|ACY84615.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Edwardsiella tarda EIB202] gi|304559051|gb|ADM41715.1| Pyruvate-flavodoxin oxidoreductase [Edwardsiella tarda FL6-60] Length = 1176 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 35/135 (25%), Gaps = 32/135 (23%) Query: 31 KTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI-------- 80 + P + + A C C C A CP AI Sbjct: 655 PVSAFPPDGTWPVGTTRWEKRNIAEAIPIWQPALCTQCNHCVAACPHAAIRAKVVAPAAL 714 Query: 81 ----------ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP--------VDAIVEGP 122 E R G R + C C LC CP V AI P Sbjct: 715 EHAPATLESLEVRARDLRGERY--VLQVAPEDCTGCNLCVTVCPAADRQDPSVKAINMQP 772 Query: 123 NFEFATETRQELYYD 137 A R++ +YD Sbjct: 773 R--LAHLAREKAHYD 785 >gi|288940310|ref|YP_003442550.1| RnfABCDGE type electron transport complex subunit C [Allochromatium vinosum DSM 180] gi|288895682|gb|ADC61518.1| electron transport complex, RnfABCDGE type, C subunit [Allochromatium vinosum DSM 180] Length = 528 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 36/101 (35%), Gaps = 11/101 (10%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C C +CP + + + D ++ CI CG C + CP I Sbjct: 385 CIRCGRCAEVCPTRLLPQQMYWNARAKD-LDRVQDYNLFDCIECGCCAQVCPSH-IPLVQ 442 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + +A + +E+ ++ +SE R R Sbjct: 443 YYRYAKTE----IWAREQ-----EKRKSEQARARHAAKQAR 474 >gi|239994544|ref|ZP_04715068.1| electron transport complex protein RnfC [Alteromonas macleodii ATCC 27126] Length = 790 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 37/115 (32%), Gaps = 3/115 (2%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P K + + L N E CI C C CPA + + Sbjct: 184 IPVVKTTNCLLVPAKKELV-DDNAERPCIRCSACADACPASLLPQQMFWHAKAKE-YDKA 241 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWES 150 + D+ CI CG C CP I + A + +K + R+E+ Sbjct: 242 EEYDLFDCIECGACAYVCP-SEIPLVHYYRQAKSEIRIQRDEKNKAEKAKQRFEA 295 >gi|222099619|ref|YP_002534187.1| Iron-sulfur cluster-binding protein [Thermotoga neapolitana DSM 4359] gi|221572009|gb|ACM22821.1| Iron-sulfur cluster-binding protein [Thermotoga neapolitana DSM 4359] Length = 310 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 33/75 (44%), Gaps = 13/75 (17%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 ++ +C+ C+LCE CPA AI I S ID KCI C +C Sbjct: 247 RFFVKYPRIDTGKCVKCRLCEERCPASAIDISSQ-------------RIDYQKCIRCYVC 293 Query: 110 QEACPVDAIVEGPNF 124 E CP DAI NF Sbjct: 294 HEVCPHDAIKLVRNF 308 >gi|149201541|ref|ZP_01878515.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Roseovarius sp. TM1035] gi|149144589|gb|EDM32618.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Roseovarius sp. TM1035] Length = 651 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 9/82 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C C C ++CP+ A+ + C+ CG+C CP AI Sbjct: 499 NTESCTLCLSCVSLCPSGALMDNEDK---------PQLRFQEDACLQCGICATICPEKAI 549 Query: 119 VEGPNFEFATETRQELYYDKER 140 P ++ ++E Sbjct: 550 TLEPRMNLDDTALTQVVLNEEE 571 Score = 39.3 bits (90), Expect = 0.16, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 20/55 (36%), Gaps = 11/55 (20%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C ICP AI+ + ID + C CG C CP AI Sbjct: 277 TGCSKCLDICPTGAISPDGD-----------HVSIDPMICAGCGACAARCPSGAI 320 >gi|153833468|ref|ZP_01986135.1| sulfite reductase, subunit C [Vibrio harveyi HY01] gi|269964103|ref|ZP_06178405.1| hypothetical protein VME_47890 [Vibrio harveyi 1DA3] gi|148870243|gb|EDL69178.1| sulfite reductase, subunit C [Vibrio harveyi HY01] gi|269831162|gb|EEZ85319.1| hypothetical protein VME_47890 [Vibrio harveyi 1DA3] Length = 333 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 27/87 (31%), Gaps = 8/87 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + + G + + RCI C C C A+ S Sbjct: 153 CPNDCAKANMADFGILGIAKINFESHRCIGCGACVKACAHHAVDCLSLKDGKAVK----- 207 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGP 122 + KCI CG C ACP A P Sbjct: 208 ---EESKCIGCGECVLACPTLAWRRDP 231 Score = 33.5 bits (75), Expect = 8.8, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 19/55 (34%), Gaps = 1/55 (1%) Query: 67 KLCEAICPAQAITIESGPRC-HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 K + A + G + + + +CI CG C +AC A+ Sbjct: 143 KYHLKMVMAGCPNDCAKANMADFGILGIAKINFESHRCIGCGACVKACAHHAVDC 197 >gi|170741450|ref|YP_001770105.1| formate dehydrogenase subunit alpha [Methylobacterium sp. 4-46] gi|168195724|gb|ACA17671.1| formate dehydrogenase, alpha subunit [Methylobacterium sp. 4-46] Length = 988 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 3/98 (3%) Query: 25 RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESG 83 +F+ + + R+ + + + CI C LC C Q + Sbjct: 174 SHFWSQADHVGVSESRFPAEERWATDASHPAMRVNLDACIQCNLCVRACREVQVNDVIGM 233 Query: 84 PRCHDGTRRTVRYDIDM--IKCIYCGLCQEACPVDAIV 119 + + +D M C+ CG C +ACP A++ Sbjct: 234 AYRNADAKVVFDFDDPMGSSTCVACGECVQACPTGALM 271 >gi|323704595|ref|ZP_08116173.1| cobyrinic acid a,c-diamide synthase [Thermoanaerobacterium xylanolyticum LX-11] gi|323536057|gb|EGB25830.1| cobyrinic acid a,c-diamide synthase [Thermoanaerobacterium xylanolyticum LX-11] Length = 289 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 37/110 (33%), Gaps = 22/110 (20%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE-------RCIACKLCEAIC 73 L + K + E + + F GE G+E +CI C LCE +C Sbjct: 19 ATTLSEIIENKVMADCDVEAPNLNILFNGEIQKVDNFYGKEVALIDEEKCIKCGLCETLC 78 Query: 74 PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 AI+ Y ++ C CGLC CP AI Sbjct: 79 RFDAISD---------------YKVNPYYCEGCGLCSYKCPNGAIKMIEE 113 >gi|303328508|ref|ZP_07358945.1| iron-sulfur cluster-binding/ATPase domain protein [Desulfovibrio sp. 3_1_syn3] gi|302861502|gb|EFL84439.1| iron-sulfur cluster-binding/ATPase domain protein [Desulfovibrio sp. 3_1_syn3] Length = 303 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 11/61 (18%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 ++ C+ C C +C A+ E G + ID + C CG+C+ CP AI Sbjct: 65 QDLCVQCGRCADLCRFGAVRNEDG-----------HFVIDPLDCEGCGVCRALCPARAID 113 Query: 120 E 120 Sbjct: 114 F 114 >gi|226950172|ref|YP_002805263.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum A2 str. Kyoto] gi|226842326|gb|ACO84992.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum A2 str. Kyoto] Length = 1192 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 24/88 (27%), Gaps = 16/88 (18%) Query: 51 HALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY 96 A+ ++CI C C +CP A Sbjct: 677 IAINVPEWQLDKCIQCNQCSYVCPHAVIRPILLTDEEVKNAPEGFKSKPAVGAKGLNFTM 736 Query: 97 DIDMIKCIYCGLCQEACP--VDAIVEGP 122 I C CG C + CP A++ P Sbjct: 737 AISPYDCTGCGNCADVCPAKEKALIMKP 764 >gi|298529931|ref|ZP_07017333.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Desulfonatronospira thiodismutans ASO3-1] gi|298509305|gb|EFI33209.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Desulfonatronospira thiodismutans ASO3-1] Length = 789 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 31/95 (32%), Gaps = 6/95 (6%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 + +F G + + C+ C LC+A+CP AI P+ Sbjct: 700 YSRMTQEYYDPRITQFEGLNGCAEQCSSCGSCMDCGLCDAVCPTGAIERTDLPQGKFQRA 759 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 KCI CG C + CP NF Sbjct: 760 AD------PEKCIGCGFCGKCCPCGIWDLVENFPM 788 >gi|225569490|ref|ZP_03778515.1| hypothetical protein CLOHYLEM_05576 [Clostridium hylemonae DSM 15053] gi|225161698|gb|EEG74317.1| hypothetical protein CLOHYLEM_05576 [Clostridium hylemonae DSM 15053] Length = 719 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 9/71 (12%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C C +C G ++ D C++CG C CPVD+I E Sbjct: 26 CIKCGQCRQVC---------EREVAVGRLYDLKSTNDTAICVHCGQCANVCPVDSIKEVY 76 Query: 123 NFEFATETRQE 133 + E ++ Sbjct: 77 EYRKVKEAVED 87 >gi|170755903|ref|YP_001782366.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum B1 str. Okra] gi|169121115|gb|ACA44951.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum B1 str. Okra] Length = 1192 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 24/88 (27%), Gaps = 16/88 (18%) Query: 51 HALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY 96 A+ ++CI C C +CP A Sbjct: 677 IAINVPEWQLDKCIQCNQCSYVCPHAVIRPILLTDEEVKNAPEGFKSKPAVGAKGLNFTM 736 Query: 97 DIDMIKCIYCGLCQEACP--VDAIVEGP 122 I C CG C + CP A++ P Sbjct: 737 AISPYDCTGCGNCADVCPAKEKALIMKP 764 >gi|153940490|ref|YP_001392038.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum F str. Langeland] gi|152936386|gb|ABS41884.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum F str. Langeland] gi|295320051|gb|ADG00429.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum F str. 230613] Length = 1192 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 24/88 (27%), Gaps = 16/88 (18%) Query: 51 HALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY 96 A+ ++CI C C +CP A Sbjct: 677 IAINVPEWQLDKCIQCNQCSYVCPHAVIRPILLTDEEVKNAPEGFKSKPAVGAKGLNFTM 736 Query: 97 DIDMIKCIYCGLCQEACP--VDAIVEGP 122 I C CG C + CP A++ P Sbjct: 737 AISPYDCTGCGNCADVCPAKEKALIMKP 764 >gi|149908810|ref|ZP_01897470.1| hypothetical iron-sulfur cluster-binding protein [Moritella sp. PE36] gi|149808084|gb|EDM68025.1| hypothetical iron-sulfur cluster-binding protein [Moritella sp. PE36] Length = 566 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 9/80 (11%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C C C A+CP +A+ G C+ CGLC++ACP + Sbjct: 432 DDCTLCMGCVAVCPTRALHAVGGRPG---------LQFKEQDCVQCGLCEKACPEQVLTL 482 Query: 121 GPNFEFATETRQELYYDKER 140 P + TE+RQ E Sbjct: 483 KPGVNWDTESRQTAVMIHEE 502 Score = 35.5 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 33/103 (32%), Gaps = 27/103 (26%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG-PNF 124 C C CPA A++ +I+ C G C ACP +AI P Sbjct: 195 CTRCVDACPAGALSSNGHA-----------IEINPFLCQGVGTCATACPTEAITYALPEP 243 Query: 125 EFATETRQELYYD-----------KERLLNNGDRWESEIVRNI 156 E Q Y K +L G+R E + + Sbjct: 244 EKT----QNFIYRLLNSYQMAGGVKPTILFFGNRDEETVAAKL 282 Score = 33.5 bits (75), Expect = 9.9, Method: Composition-based stats. Identities = 6/23 (26%), Positives = 8/23 (34%) Query: 97 DIDMIKCIYCGLCQEACPVDAIV 119 + C C C CP A+ Sbjct: 428 ECKTDDCTLCMGCVAVCPTRALH 450 >gi|46580508|ref|YP_011316.1| iron-sulfur cluster-binding/ATPase domain-containing protein [Desulfovibrio vulgaris str. Hildenborough] gi|120602175|ref|YP_966575.1| cobyrinic acid a,c-diamide synthase [Desulfovibrio vulgaris DP4] gi|46449927|gb|AAS96576.1| iron-sulfur cluster-binding/ATPase domain protein [Desulfovibrio vulgaris str. Hildenborough] gi|120562404|gb|ABM28148.1| Cobyrinic acid a,c-diamide synthase [Desulfovibrio vulgaris DP4] gi|311234248|gb|ADP87102.1| iron-sulfur cluster-binding/ATPase domain-containing protein [Desulfovibrio vulgaris RCH1] Length = 287 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 20/64 (31%), Gaps = 12/64 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI+C LC C AI P + C CG+C CP A Sbjct: 64 EPEACISCGLCTTHCRYGAIPQGYAP------------QVAPEHCEGCGVCAHVCPTGAA 111 Query: 119 VEGP 122 Sbjct: 112 RLSD 115 >gi|304314561|ref|YP_003849708.1| energy-converting hydrogenase A, subunit Q [Methanothermobacter marburgensis str. Marburg] gi|302588020|gb|ADL58395.1| energy-converting hydrogenase A, subunit Q [Methanothermobacter marburgensis str. Marburg] Length = 407 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 30/88 (34%), Gaps = 6/88 (6%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P++ C C C + C AI + S + V Sbjct: 26 CPYDAIRMKTILGEPVRENVPVINPRICRGCGACVSACRTGAIHLTSSGKTG------VH 79 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +ID KC+ CG C ACP +AI G Sbjct: 80 SEIDEDKCVRCGYCARACPTEAIKYGEI 107 Score = 41.6 bits (96), Expect = 0.038, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 12/62 (19%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C +C CP A+ ++ ++D CI CG CQ+ CPV A+ Sbjct: 350 DHVICQRCGVCVNHCPVDAMAMDGE------------VEVDDDTCILCGECQDICPVTAV 397 Query: 119 VE 120 Sbjct: 398 KL 399 Score = 41.2 bits (95), Expect = 0.052, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 29/79 (36%), Gaps = 11/79 (13%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI-----------DMIKCIYCGLCQE 111 C+ C C +CP A+ I R + I D + C CG+C Sbjct: 303 CVFCGRCRGVCPVDAVEITEEGFRASDGRIYLERRILRGPRSGSVEVDHVICQRCGVCVN 362 Query: 112 ACPVDAIVEGPNFEFATET 130 CPVDA+ E +T Sbjct: 363 HCPVDAMAMDGEVEVDDDT 381 Score = 40.5 bits (93), Expect = 0.070, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 22/61 (36%), Gaps = 3/61 (4%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 +RC C LC CP AI + R I+ C CG C AC AI Sbjct: 14 DRCFGCVLCREACPYDAIRM---KTILGEPVRENVPVINPRICRGCGACVSACRTGAIHL 70 Query: 121 G 121 Sbjct: 71 T 71 Score = 38.5 bits (88), Expect = 0.33, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 11/63 (17%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCI C LC CP I + C++CG C+ CPVDA+ Sbjct: 272 ERCIGCGLCVTECPVGVIEPVTPAPVEIK-----------DGCVFCGRCRGVCPVDAVEI 320 Query: 121 GPN 123 Sbjct: 321 TEE 323 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 20/63 (31%), Gaps = 8/63 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI C C +CP+ + ID C C C + CP AI Sbjct: 121 NQRDCIGCMTCTRVCPS--------RGAIKVGKINRLPYIDPSYCARCEECMDVCPSAAI 172 Query: 119 VEG 121 Sbjct: 173 KYS 175 Score = 33.9 bits (76), Expect = 6.6, Method: Composition-based stats. Identities = 10/19 (52%), Positives = 11/19 (57%) Query: 100 MIKCIYCGLCQEACPVDAI 118 +CI CGLC CPV I Sbjct: 271 EERCIGCGLCVTECPVGVI 289 >gi|290892979|ref|ZP_06555969.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria monocytogenes FSL J2-071] gi|290557555|gb|EFD91079.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria monocytogenes FSL J2-071] Length = 1215 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 28/105 (26%), Positives = 35/105 (33%), Gaps = 16/105 (15%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCH 87 T+ + AL E C C C +CP AI E Sbjct: 669 PPGTAAYEKRGIALEVPEWISENCTMCNECAFVCPHAAIRPILTDEEEMESAPEGFMTRE 728 Query: 88 DGTRRTVRYDID--MIKCIYCGLCQEACPV--DAIVEGPNFEFAT 128 + +RY I + C C LC E CP A+V P E AT Sbjct: 729 MRGKDGLRYRIQVSPMDCTGCNLCAETCPAKDKALVMKPFEEVAT 773 Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 5/80 (6%) Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV--EGPNFEFATETRQ 132 + A + G V I C C C CP AI E E+ Sbjct: 665 SGAYPPGTAAYEKRGIALEVPEWI-SENCTMCNECAFVCPHAAIRPILTDEEEM--ESAP 721 Query: 133 ELYYDKERLLNNGDRWESEI 152 E + +E +G R+ ++ Sbjct: 722 EGFMTREMRGKDGLRYRIQV 741 >gi|187778667|ref|ZP_02995140.1| hypothetical protein CLOSPO_02262 [Clostridium sporogenes ATCC 15579] gi|187772292|gb|EDU36094.1| hypothetical protein CLOSPO_02262 [Clostridium sporogenes ATCC 15579] Length = 1192 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 24/88 (27%), Gaps = 16/88 (18%) Query: 51 HALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY 96 A+ ++CI C C +CP A Sbjct: 677 IAINVPEWQLDKCIQCNQCSYVCPHAVIRPVLLSDEEVKNAPEGFKSKPAVGAKGLNFTM 736 Query: 97 DIDMIKCIYCGLCQEACP--VDAIVEGP 122 I C CG C + CP A++ P Sbjct: 737 AISPYDCTGCGNCADVCPAKEKALIMKP 764 >gi|152995571|ref|YP_001340406.1| RnfABCDGE type electron transport complex subunit C [Marinomonas sp. MWYL1] gi|150836495|gb|ABR70471.1| electron transport complex, RnfABCDGE type, C subunit [Marinomonas sp. MWYL1] Length = 981 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 34/98 (34%), Gaps = 10/98 (10%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C +CE CPA + + ++ CI CG C CP +I Sbjct: 371 QACIRCGMCEQACPAS-LLPQQLLWFSKSQEFEKAEHHNLFDCIECGACSYVCP-SSIPL 428 Query: 121 GPNFEFAT----ETRQELYYDKERLLNNGDRWESEIVR 154 + E R+ K L R+E+ R Sbjct: 429 VQYYRHTKSSIREAREANV--KSDLAK--QRFEARKAR 462 >gi|118592955|ref|ZP_01550343.1| dihydropyrimidine dehydrogenase [Stappia aggregata IAM 12614] gi|118434489|gb|EAV41142.1| dihydropyrimidine dehydrogenase [Stappia aggregata IAM 12614] Length = 437 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 6/95 (6%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI C C C + ++ DG R+ D +C+ Sbjct: 329 QYLNLNYIAKAKIDQDLCIECGRCHIACED--TSHQAITNMVDGVRKFEVID---EECVG 383 Query: 106 CGLCQEACP-VDAIVEGPNFEFATETRQELYYDKE 139 C LC CP I P + + R + +K+ Sbjct: 384 CNLCVNVCPIEGCITMEPMAAGSIDPRTKKPVEKD 418 >gi|259416891|ref|ZP_05740811.1| 4Fe-4S ferredoxin, iron-sulfur binding [Silicibacter sp. TrichCH4B] gi|259348330|gb|EEW60107.1| 4Fe-4S ferredoxin, iron-sulfur binding [Silicibacter sp. TrichCH4B] Length = 192 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 35/104 (33%), Gaps = 15/104 (14%) Query: 19 AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78 A + L +TT P E ++ G Y E C C+ C CP+ AI Sbjct: 96 ALAVLLEEPVTEETTRALPQEPQDSAEANAG------YVTISEGCTLCQHCIWSCPSDAI 149 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + +I C CGLC ACP + P Sbjct: 150 HLGEQGDT---------LEIRDRHCTGCGLCASACPERVLAILP 184 >gi|239905934|ref|YP_002952673.1| Fe hydrogenase large subunit [Desulfovibrio magneticus RS-1] gi|239795798|dbj|BAH74787.1| Fe hydrogenase large subunit [Desulfovibrio magneticus RS-1] Length = 421 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 25/68 (36%), Gaps = 9/68 (13%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L E +CI C C CP AI E+G CI CG C Sbjct: 25 LFFIKVDESKCIGCDSCMGYCPTGAIYGETGEPHKIPHV---------EACINCGQCLTH 75 Query: 113 CPVDAIVE 120 CPV AI E Sbjct: 76 CPVSAIYE 83 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 13/42 (30%) Query: 78 ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 P + +D KCI C C CP AI Sbjct: 10 FYEMQSPDPKADPDKLFFIKVDESKCIGCDSCMGYCPTGAIY 51 >gi|258511892|ref|YP_003185326.1| formate dehydrogenase, alpha subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257478618|gb|ACV58937.1| formate dehydrogenase, alpha subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 986 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 30/80 (37%), Gaps = 5/80 (6%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDM 100 + + + Y +CI C C C ++ ++I+ I+ Sbjct: 132 KPYEVDMSHPFYRYDPSQCILCGRCVEACQNLQVSEVLSIDWDREIPRVIWDNDVP-INE 190 Query: 101 IKCIYCGLCQEACPVDAIVE 120 C+ CG C CP +A++E Sbjct: 191 SSCVSCGHCVTVCPCNALME 210 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 28/83 (33%), Gaps = 9/83 (10%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIAC----KLCEAICPAQAITIES-----GPRCHDGT 90 K + R E R N + C C C A+ I+ + ++ Sbjct: 78 KSVAARYARKEAMDRILKNHDLYCTVCDNNNGNCVVHNTTMAMDIDHQSYPFREKPYEVD 137 Query: 91 RRTVRYDIDMIKCIYCGLCQEAC 113 Y D +CI CG C EAC Sbjct: 138 MSHPFYRYDPSQCILCGRCVEAC 160 >gi|148380718|ref|YP_001255259.1| pyruvate-flavodoxin oxidoreductase [Clostridium botulinum A str. ATCC 3502] gi|153932227|ref|YP_001385002.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum A str. ATCC 19397] gi|153936104|ref|YP_001388472.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum A str. Hall] gi|148290202|emb|CAL84321.1| pyruvate-flavodoxin oxidoreductase [Clostridium botulinum A str. ATCC 3502] gi|152928271|gb|ABS33771.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum A str. ATCC 19397] gi|152932018|gb|ABS37517.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum A str. Hall] Length = 1192 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 24/88 (27%), Gaps = 16/88 (18%) Query: 51 HALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY 96 A+ ++CI C C +CP A Sbjct: 677 IAINVPEWQLDKCIQCNQCSYVCPHAVIRPVLLSDEEVKNAPKGFESKPAAGAKGLNFTM 736 Query: 97 DIDMIKCIYCGLCQEACP--VDAIVEGP 122 I C CG C + CP A+V P Sbjct: 737 AISPYDCTGCGNCADVCPAKEKALVMKP 764 >gi|20093689|ref|NP_613536.1| heterodisulfide reductase, subunit A [Methanopyrus kandleri AV19] gi|190358780|sp|Q8TYP4|HDRA1_METKA RecName: Full=CoB--CoM heterodisulfide reductase iron-sulfur subunit A 1 gi|19886574|gb|AAM01466.1| Heterodisulfide reductase, subunit A [Methanopyrus kandleri AV19] Length = 669 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 31/89 (34%), Gaps = 9/89 (10%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAIT-------IESGPRCHDGTRRTVRYDI 98 F + E+ C C +C +CP + + Y I Sbjct: 232 NFEVTIEKKPRYVDEDACTGCGVCAEVCPIEVPNEFDLGIGTRKAIYVPFPQAMPLVYTI 291 Query: 99 DMIKCIYCGLCQEACPV--DAIVEGPNFE 125 DM CI CGLC+EACP AI E Sbjct: 292 DMEHCIQCGLCEEACPQDPPAIDFDQEPE 320 Score = 42.4 bits (98), Expect = 0.023, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 25/70 (35%), Gaps = 7/70 (10%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 L E+ C C C +CP AI + G R D+ C CG C Sbjct: 581 IELITATVDEDVCGGCGACAQVCPFDAIEMVEKD----GKRVAEVQDVA---CQGCGQCA 633 Query: 111 EACPVDAIVE 120 ACP A+ Sbjct: 634 AACPSGAMQL 643 >gi|320658802|gb|EFX26476.1| electron transport complex protein RnfB [Escherichia coli O55:H7 str. USDA 5905] Length = 192 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 26/76 (34%), Gaps = 10/76 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI + + + + C C LC + CP I Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSVLCTGCNLCVDPCPTHCI 162 Query: 119 VEGPNFEFATETRQEL 134 P E + +L Sbjct: 163 SLQPVAETPDSWKWDL 178 Score = 35.5 bits (80), Expect = 2.5, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C C +ACPVDAI Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132 >gi|255528595|ref|ZP_05395364.1| nitroreductase [Clostridium carboxidivorans P7] gi|255507710|gb|EET84181.1| nitroreductase [Clostridium carboxidivorans P7] Length = 273 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 34/103 (33%), Gaps = 16/103 (15%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 E+C+ C LC C + I + I+ + C CG C CP Sbjct: 1 MMKVDTEKCVGCGLCVKDCFPKDIEMVDNKA-----------KINNVTCFKCGHCIAVCP 49 Query: 115 VDAIVEGPNFEFAT---ETRQELYYDKERLLNNGDRWESEIVR 154 AI + +++ + LL N ++ I + Sbjct: 50 KAAIT-TDEYNMEDVKEYNKEDFSIQPDSLL-NFIKFRRTIRQ 90 >gi|225572308|ref|ZP_03781172.1| hypothetical protein RUMHYD_00602 [Blautia hydrogenotrophica DSM 10507] gi|225040190|gb|EEG50436.1| hypothetical protein RUMHYD_00602 [Blautia hydrogenotrophica DSM 10507] Length = 944 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 27/94 (28%), Gaps = 9/94 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P+E R Y ++CI C C C V Sbjct: 135 VPYEHREKDTSNR------FYYQEMDKCIRCGKCVRTCRELVGINALAMAQRGAVAYVVP 188 Query: 96 Y---DIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 + C+ CG C CPV A++ EF Sbjct: 189 NGGDTMAETACVSCGNCVSVCPVGALMPKSLHEF 222 >gi|168180834|ref|ZP_02615498.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum NCTC 2916] gi|182668364|gb|EDT80343.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum NCTC 2916] Length = 1192 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 24/88 (27%), Gaps = 16/88 (18%) Query: 51 HALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY 96 A+ ++CI C C +CP A Sbjct: 677 IAINVPEWQLDKCIQCNQCSYVCPHAVIRPILLTDEEVKNAPEGFKSKPAVGAKGLNFTM 736 Query: 97 DIDMIKCIYCGLCQEACP--VDAIVEGP 122 I C CG C + CP A++ P Sbjct: 737 AISPYDCTGCGNCADVCPAKEKALIMKP 764 >gi|89074883|ref|ZP_01161333.1| hypothetical iron-sulfur cluster-binding protein [Photobacterium sp. SKA34] gi|89049280|gb|EAR54843.1| hypothetical iron-sulfur cluster-binding protein [Photobacterium sp. SKA34] Length = 551 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 9/76 (11%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 C C C A+CP +A+ C+ CG+C++ACP Sbjct: 414 CDTTDCTLCMSCVAVCPTRALHAIGNRPGLL---------FIEEDCVQCGMCEKACPEKV 464 Query: 118 IVEGPNFEFATETRQE 133 I P F + R+E Sbjct: 465 ISLEPRFNWDWHARKE 480 Score = 35.1 bits (79), Expect = 3.2, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 22/50 (44%), Gaps = 2/50 (4%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI--KCIYCGL 108 E C+ C +CE CP + I++E R+ R + CI CG Sbjct: 448 EDCVQCGMCEKACPEKVISLEPRFNWDWHARKEARLVHEESAACCISCGN 497 Score = 35.1 bits (79), Expect = 3.3, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 36/100 (36%), Gaps = 19/100 (19%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE----- 120 C C CPA A++ + ID C G C ACP +AI Sbjct: 190 CDRCLDACPAGALSSDGVEVA-----------IDPYLCQGVGSCATACPTEAITYALPDP 238 Query: 121 --GPNFEFATETR-QELYYDKERLLNNGDRWESEIVRNIV 157 NF TR ++ +K LL G+R E + + Sbjct: 239 QNTQNFVHRVLTRYKQEGGEKPTLLLYGNRDEKAVTAALA 278 >gi|302339228|ref|YP_003804434.1| dihydroorotate dehydrogenase [Spirochaeta smaragdinae DSM 11293] gi|301636413|gb|ADK81840.1| dihydroorotate dehydrogenase family protein [Spirochaeta smaragdinae DSM 11293] Length = 362 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 11/63 (17%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 + + C C C +CP +A ++ ++D C YCGLC ACP Sbjct: 304 FSYNPDICTECGRCVTVCPYEARSMVGRQ-----------MNLDRSMCRYCGLCVTACPT 352 Query: 116 DAI 118 A+ Sbjct: 353 GAL 355 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 7/25 (28%), Positives = 10/25 (40%) Query: 96 YDIDMIKCIYCGLCQEACPVDAIVE 120 + + C CG C CP +A Sbjct: 304 FSYNPDICTECGRCVTVCPYEARSM 328 >gi|281358583|ref|ZP_06245062.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Victivallis vadensis ATCC BAA-548] gi|281314931|gb|EFA98965.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Victivallis vadensis ATCC BAA-548] Length = 369 Score = 48.9 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 23/64 (35%), Gaps = 11/64 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI + C IC A T G +ID KC+ CG C CP DAI Sbjct: 194 DRTLCIGSRACARICAHGAPTFSEGKA-----------EIDHAKCVGCGRCIGVCPKDAI 242 Query: 119 VEGP 122 Sbjct: 243 QPSW 246 >gi|329960108|ref|ZP_08298572.1| pyruvate synthase [Bacteroides fluxus YIT 12057] gi|328533060|gb|EGF59833.1| pyruvate synthase [Bacteroides fluxus YIT 12057] Length = 1185 Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 32/90 (35%), Gaps = 15/90 (16%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGP 84 E+G+ RG A N E CI C C +CP A + Sbjct: 667 EQGTAKYEKRGVAAFVPEWN-AENCIQCNKCAYVCPHASIRPFVLDAEEQKGAGFTQLKA 725 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 T R ++++ C+ CG C + CP Sbjct: 726 VGKAFDGMTFRMQVNVLDCLGCGNCADICP 755 >gi|284033073|ref|YP_003383004.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Kribbella flavida DSM 17836] gi|283812366|gb|ADB34205.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Kribbella flavida DSM 17836] Length = 499 Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 23/56 (41%), Gaps = 3/56 (5%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 C A C + CP I G G T ID CI CG C E CPVDA Sbjct: 8 DCCADARCVSACPMNCIHPSPGE---PGFGTTDGLFIDPRTCIDCGACAEVCPVDA 60 >gi|262037146|ref|ZP_06010638.1| electron transport complex protein RnfC [Leptotrichia goodfellowii F0264] gi|261748834|gb|EEY36181.1| electron transport complex protein RnfC [Leptotrichia goodfellowii F0264] Length = 441 Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 24/61 (39%), Gaps = 1/61 (1%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 CI+C C CP + ++ G + +++ CI CG C+ +C Sbjct: 356 NIDNIERNNCISCGYCVDACPMGLMPMKFEEMYRKG-KYKKLVKLNLDMCIECGACEYSC 414 Query: 114 P 114 P Sbjct: 415 P 415 Score = 34.7 bits (78), Expect = 4.4, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 15/30 (50%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 +I+ CI CG C +ACP+ + + Sbjct: 359 NIERNNCISCGYCVDACPMGLMPMKFEEMY 388 >gi|146297247|ref|YP_001181018.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410823|gb|ABP67827.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 339 Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 6/82 (7%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E+CI C LCE CP +G + D C C C + CP A+VE Sbjct: 252 EKCIHCGLCETTCPD--YVFVWDRFLENGKPKMFNLGPDYQYCKGCLRCVDVCPSGALVE 309 Query: 121 G----PNFEFATETRQELYYDK 138 G + E + Y+K Sbjct: 310 GIEREHDIEKISAKHDFDVYEK 331 Score = 34.7 bits (78), Expect = 4.8, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 10/59 (16%) Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWE 149 R KCI+CGLC+ CP V E K ++ N G ++ Sbjct: 242 RVGKIPIFIKEKCIHCGLCETTCPDYVFVWDRFLEN----------GKPKMFNLGPDYQ 290 >gi|300856191|ref|YP_003781175.1| fumarate reductase/succinate dehydrogenase flavoprotein-like protein [Clostridium ljungdahlii DSM 13528] gi|300436306|gb|ADK16073.1| fumarate reductase/succinate dehydrogenase flavoprotein-like protein [Clostridium ljungdahlii DSM 13528] Length = 926 Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 10/67 (14%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 A +C C C +CP I ++ ID C CG+C + Sbjct: 317 AFTNIYVDPRKCKGCGKCLEVCPEDCIEA----------KKGYISMIDEFDCTKCGICID 366 Query: 112 ACPVDAI 118 CP +AI Sbjct: 367 ECPNNAI 373 Score = 38.5 bits (88), Expect = 0.32, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 15/47 (31%) Query: 78 ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 I+ +D KC CG C E CP D I + Sbjct: 303 QHIKKRGCPAGQCLAFTNIYVDPRKCKGCGKCLEVCPEDCIEAKKGY 349 >gi|302875114|ref|YP_003843747.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B] gi|307690260|ref|ZP_07632706.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B] gi|302577971|gb|ADL51983.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B] Length = 630 Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 10/65 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + CI C C CP + I+ + ++ ID KCI CG C E CPV Sbjct: 576 YEITDECIGCTKCSRACPVRCISG----------KIKGKHIIDQEKCIKCGTCFEGCPVK 625 Query: 117 AIVEG 121 AI G Sbjct: 626 AIKLG 630 Score = 38.2 bits (87), Expect = 0.44, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 1/48 (2%) Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ ++ VRY+I +CI C C ACPV I Sbjct: 551 YFMDEYNAHVDEKKCVAGKCKKLVRYEI-TDECIGCTKCSRACPVRCI 597 >gi|220904771|ref|YP_002480083.1| hydrogenase, Fe-only [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869070|gb|ACL49405.1| hydrogenase, Fe-only [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 418 Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 31/84 (36%), Gaps = 10/84 (11%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 +E G+ L + ++CI C LC+ CP A+ E+G Sbjct: 11 YEPHVPPRGADGDKMLFVQIDD-KKCIGCDLCQEYCPTGAVYGETGLAHTVAY------- 62 Query: 98 IDMIKCIYCGLCQEACPVDAIVEG 121 CI CG C CP AI E Sbjct: 63 --PEPCINCGQCLTHCPEMAIYET 84 >gi|153807874|ref|ZP_01960542.1| hypothetical protein BACCAC_02160 [Bacteroides caccae ATCC 43185] gi|149129483|gb|EDM20697.1| hypothetical protein BACCAC_02160 [Bacteroides caccae ATCC 43185] Length = 635 Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 10/66 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L Y E CI C LC CPA AI+ + I+ KCI CG+C Sbjct: 577 LLTYTINPEHCIGCHLCAKNCPADAISGL----------VRKPHVINPDKCIKCGMCMAR 626 Query: 113 CPVDAI 118 C AI Sbjct: 627 CKFKAI 632 Score = 38.2 bits (87), Expect = 0.35, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 8/62 (12%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 + + + Y I+ CI C LC + CP DAI + R+ + Sbjct: 563 HVRDKTCRAKQCKSLLTYTINPEHCIGCHLCAKNCPADAI--------SGLVRKPHVINP 614 Query: 139 ER 140 ++ Sbjct: 615 DK 616 >gi|291544150|emb|CBL17259.1| Iron only hydrogenase large subunit, C-terminal domain [Ruminococcus sp. 18P13] Length = 475 Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110 + +C C C +CP AI P + + + + ID KCI CG C Sbjct: 123 HIDKSKCKNCGACAKVCPYTAINCRRRPCENACKIKALHMNENKAAAIDNDKCISCGACV 182 Query: 111 EACPVDAI 118 CP AI Sbjct: 183 YQCPFGAI 190 Score = 40.9 bits (94), Expect = 0.062, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 22/66 (33%), Gaps = 12/66 (18%) Query: 57 PNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 C C CE +C AIT + ID KC CG C + CP Sbjct: 91 YEVTNACRGCLAHRCEDVCRFGAITFD----------YQHVAHIDKSKCKNCGACAKVCP 140 Query: 115 VDAIVE 120 AI Sbjct: 141 YTAINC 146 >gi|291167110|gb|EFE29156.1| iron-sulfur cluster-binding protein [Filifactor alocis ATCC 35896] Length = 307 Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 26/73 (35%), Gaps = 15/73 (20%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L Y + +CI+C C IC ++ CI CG C +A Sbjct: 233 LLSYNVDQNKCISCGKCSRICKMDVDITKNNAHTE---------------CIRCGECIKA 277 Query: 113 CPVDAIVEGPNFE 125 CP AI FE Sbjct: 278 CPTQAISTHWGFE 290 >gi|317153661|ref|YP_004121709.1| ferredoxin-dependent glutamate synthase [Desulfovibrio aespoeensis Aspo-2] gi|316943912|gb|ADU62963.1| ferredoxin-dependent glutamate synthase [Desulfovibrio aespoeensis Aspo-2] Length = 544 Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 32/101 (31%), Gaps = 16/101 (15%) Query: 41 GSTSPRFRGEHALRR-YPNGEERCIACKLCEAICPAQAIT--------------IESGPR 85 +P G L C C C A+CP AI +++ P Sbjct: 5 RPVTPATLGVKDLPWQIKWDIATCTKCGRCTAVCPVNAIELGVFRKREINAPMGLQAKPS 64 Query: 86 CHDGTRRTVRYDIDMIK-CIYCGLCQEACPVDAIVEGPNFE 125 +R D CI C +C CP +AI ++ Sbjct: 65 NTFSVYYGIRQRTDPAYACIGCAMCAMVCPNNAIEPTRQYD 105 >gi|153824794|ref|ZP_01977461.1| iron-sulfur cluster-binding protein [Vibrio cholerae MZO-2] gi|149741512|gb|EDM55542.1| iron-sulfur cluster-binding protein [Vibrio cholerae MZO-2] Length = 553 Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 9/75 (12%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C A+CP +A+ C+ CGLC +ACP A+ Sbjct: 418 SDCTLCMSCVAVCPTRALHPAGDSPA---------LRFIEQDCVQCGLCVKACPEQALSA 468 Query: 121 GPNFEFATETRQELY 135 P + RQ + Sbjct: 469 TPQLNWNKAARQGVV 483 Score = 40.9 bits (94), Expect = 0.056, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 14/81 (17%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 C+ C CPA A++ E + R I+ C G C ACP +AI + Sbjct: 186 CERCVDACPAGALSSEGSDQTGH------RIQINPYLCQGVGTCATACPTEAIH----YA 235 Query: 126 FA-TETRQELYYDKERLLNNG 145 Q+ ERLL N Sbjct: 236 LPNPTDTQKFI---ERLLANY 253 Score = 33.9 bits (76), Expect = 7.1, Method: Composition-based stats. Identities = 6/23 (26%), Positives = 8/23 (34%) Query: 97 DIDMIKCIYCGLCQEACPVDAIV 119 + C C C CP A+ Sbjct: 414 ECQTSDCTLCMSCVAVCPTRALH 436 >gi|255315823|ref|ZP_05357406.1| putative nitroreductase [Clostridium difficile QCD-76w55] gi|260684650|ref|YP_003215935.1| putative nitroreductase [Clostridium difficile CD196] gi|260688308|ref|YP_003219442.1| putative nitroreductase [Clostridium difficile R20291] gi|260210813|emb|CBA65837.1| putative nitroreductase [Clostridium difficile CD196] gi|260214325|emb|CBE06677.1| putative nitroreductase [Clostridium difficile R20291] Length = 260 Score = 48.9 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 31/95 (32%), Gaps = 11/95 (11%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 +E CI C LC+ CP I IE+ I C+ CG Sbjct: 1 MNMKYQHIIEVDKELCIGCGLCKNDCPVNNIIIENKKSV-----------IKKQDCLMCG 49 Query: 108 LCQEACPVDAIVEGPNFEFATETRQELYYDKERLL 142 C CP AI E E + D + LL Sbjct: 50 HCAAICPTKAITLTGFDEPPIELTNKPKLDSDELL 84 >gi|323968397|gb|EGB63803.1| electron transporter [Escherichia coli M863] Length = 740 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQNCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|322807070|emb|CBZ04644.1| pyruvate-flavodoxin oxidoreductase [Clostridium botulinum H04402 065] Length = 1192 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 24/88 (27%), Gaps = 16/88 (18%) Query: 51 HALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY 96 A+ ++CI C C +CP A Sbjct: 677 IAINVPEWQLDKCIQCNQCSYVCPHAVIRPVLLTDEEVKNAPEGFKSKPAAGAKGLNFTM 736 Query: 97 DIDMIKCIYCGLCQEACP--VDAIVEGP 122 I C CG C + CP A+V P Sbjct: 737 AISPYDCTGCGNCADVCPAKEKALVMKP 764 >gi|291278907|ref|YP_003495742.1| electron transport complex protein RnfB [Deferribacter desulfuricans SSM1] gi|290753609|dbj|BAI79986.1| electron transport complex protein RnfB [Deferribacter desulfuricans SSM1] Length = 260 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 25/80 (31%), Positives = 31/80 (38%), Gaps = 11/80 (13%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 EK + + CI C+LC CP AIT+E+ I Sbjct: 189 EKKFIVSCSSKDKGVETKKVCSVGCIGCRLCAKNCPEDAITVENNLAY-----------I 237 Query: 99 DMIKCIYCGLCQEACPVDAI 118 KCI CG C+E CP AI Sbjct: 238 HAEKCINCGKCEEVCPTKAI 257 Score = 37.8 bits (86), Expect = 0.55, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 5/73 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQEAC 113 EE+C AC LC CP I + + + + + CI C LC + C Sbjct: 164 DEEKCTACGLCVKACPRNLIELIDVEKKFIVSCSSKDKGVETKKVCSVGCIGCRLCAKNC 223 Query: 114 PVDAIVEGPNFEF 126 P DAI N + Sbjct: 224 PEDAITVENNLAY 236 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 31/91 (34%), Gaps = 17/91 (18%) Query: 39 EKGSTSPRFRGE---HALRRYPNGEERCIA-C---KLCEAICPAQAITIESGPRCHDGTR 91 EK + G HA+ G + CI C C C A+ + Sbjct: 107 EKCPPKYEYYGPADCHAIVMLGGGNKGCIYGCVGGGSCVKACNFDALKMGDNGIPV---- 162 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 +D KC CGLC +ACP + I Sbjct: 163 ------VDEEKCTACGLCVKACPRNLIELID 187 >gi|284921553|emb|CBG34625.1| electron transport complex protein [Escherichia coli 042] Length = 741 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQNCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|218438247|ref|YP_002376576.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Cyanothece sp. PCC 7424] gi|218170975|gb|ACK69708.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Cyanothece sp. PCC 7424] Length = 1222 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/118 (16%), Positives = 34/118 (28%), Gaps = 24/118 (20%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPR 85 +T+ + A + C+ C C +CP +A Sbjct: 679 PTATTKWEKRNIAQEIPVWDPDVCVQCGKCVLVCPHAVIRSKVYEEQELAEAPAAFKSTN 738 Query: 86 CHDGTRRTVRYDID--MIKCIYCGLCQEACPV--------DAIVEGPNFEFATETRQE 133 D + +++ I C CG+C + CP AI + R+ Sbjct: 739 AKDHDWKGLKFTIQVAAEDCTGCGICVDVCPAKNKSQPKLKAINMEAQLPLREQEREN 796 >gi|170682353|ref|YP_001743625.1| electron transport complex protein RnfC [Escherichia coli SMS-3-5] gi|226735444|sp|B1LEQ7|RNFC_ECOSM RecName: Full=Electron transport complex protein rnfC gi|170520071|gb|ACB18249.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli SMS-3-5] Length = 676 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQNCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|89892861|ref|YP_516348.1| pyruvate ferredoxin oxidoreductase [Desulfitobacterium hafniense Y51] gi|219666124|ref|YP_002456559.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Desulfitobacterium hafniense DCB-2] gi|89332309|dbj|BAE81904.1| pyruvate ferredoxin oxidoreductase [Desulfitobacterium hafniense Y51] gi|219536384|gb|ACL18123.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Desulfitobacterium hafniense DCB-2] Length = 1176 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 28/83 (33%), Gaps = 17/83 (20%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRRTV-------- 94 RG + + E+CI C C +CP AI E +G Sbjct: 677 RGIAVIVPEWD-VEKCIQCNQCSYVCPHAAIRPFLLNEEEVANAPEGFVTKKALGKEADG 735 Query: 95 ---RYDIDMIKCIYCGLCQEACP 114 R + + C CG C E CP Sbjct: 736 LQLRVQVSPLDCTGCGNCAEVCP 758 Score = 33.9 bits (76), Expect = 7.1, Method: Composition-based stats. Identities = 9/18 (50%), Positives = 9/18 (50%) Query: 101 IKCIYCGLCQEACPVDAI 118 KCI C C CP AI Sbjct: 689 EKCIQCNQCSYVCPHAAI 706 >gi|330973101|gb|EGH73167.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas syringae pv. aceris str. M302273PT] Length = 291 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 10/75 (13%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 RG + E CI C C CP AI + + + + + +C C Sbjct: 76 RGTAPAQVAFIREAECIGCTKCIQACPVDAILGAAK----------LMHTVIIDECTGCD 125 Query: 108 LCQEACPVDAIVEGP 122 LC CPVD I P Sbjct: 126 LCIAPCPVDCIEMHP 140 >gi|328954778|ref|YP_004372111.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Coriobacterium glomerans PW2] gi|328455102|gb|AEB06296.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Coriobacterium glomerans PW2] Length = 412 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 5/68 (7%) Query: 63 CIACKLCEAICPAQAITIESGPR---CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 CI C+ C +C AI+ TR+ ID +C+ CG C AC DAIV Sbjct: 214 CIGCRACARVCAFDAISFTETRERALAGGATRQIQVAGIDQTRCVGCGRCIGACNQDAIV 273 Query: 120 EGPNFEFA 127 P+++ A Sbjct: 274 --PDYDQA 279 >gi|315186845|gb|EFU20603.1| hypothetical protein SpithDRAFT_0758 [Spirochaeta thermophila DSM 6578] Length = 371 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 12/58 (20%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +RC C C +CP IT++S PR +CIYC C E CP +AI Sbjct: 309 DRCRRCGYCARVCPVSCITMDSLPRWD------------YSRCIYCYCCHENCPHEAI 354 Score = 40.5 bits (93), Expect = 0.076, Method: Composition-based stats. Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 2/39 (5%) Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVEG--PNFEFA 127 R + +C CG C CPV I P ++++ Sbjct: 299 WVRSRPRVIADRCRRCGYCARVCPVSCITMDSLPRWDYS 337 >gi|310827348|ref|YP_003959705.1| hypothetical protein ELI_1756 [Eubacterium limosum KIST612] gi|308739082|gb|ADO36742.1| hypothetical protein ELI_1756 [Eubacterium limosum KIST612] Length = 247 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 31/87 (35%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E + ++ R P E+CI C LC C A S + Y+ Sbjct: 100 EIQAMCDKYGAFETSRLKPVDGEKCILCGLCTKACDALGTGAISTINRGVTKKVATPYEN 159 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFE 125 + CI C C + CP AI + E Sbjct: 160 PSVDCIGCTSCAQVCPTGAIEWSEDGE 186 >gi|302344257|ref|YP_003808786.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075] gi|301640870|gb|ADK86192.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075] Length = 638 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 10/73 (13%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 L +Y E C C C CP QAI+ E + ID KCI C +C Sbjct: 569 KELFQYEIDPEACTGCHACWRKCPQQAISGEKKKP----------HVIDQAKCIKCSICY 618 Query: 111 EACPVDAIVEGPN 123 +AC +A+V PN Sbjct: 619 DACKFNAVVVKPN 631 Score = 33.9 bits (76), Expect = 6.6, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 8/62 (12%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 I + +Y+ID C C C CP AI + E ++ D+ Sbjct: 557 HIRDKFCPAGVCKELFQYEIDPEACTGCHACWRKCPQQAI--------SGEKKKPHVIDQ 608 Query: 139 ER 140 + Sbjct: 609 AK 610 >gi|270261662|ref|ZP_06189935.1| transporter [Serratia odorifera 4Rx13] gi|270045146|gb|EFA18237.1| transporter [Serratia odorifera 4Rx13] Length = 801 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 3/107 (2%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E+ CI C LC CPA + + G + ++ CI CG C CP Sbjct: 371 QEPEQSCIRCGLCVDACPAG-LLPQQLYWFSRGEEHEKARNHNLFDCIECGACAFVCP-S 428 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 I + + + + R R+E+++ R + + R Sbjct: 429 NIPLVQYYRQEKAEIKAIDQEAARTAEAKARYEAKLAR-LEREKLAR 474 >gi|90578562|ref|ZP_01234372.1| hypothetical iron-sulfur cluster-binding protein [Vibrio angustum S14] gi|90439395|gb|EAS64576.1| hypothetical iron-sulfur cluster-binding protein [Vibrio angustum S14] Length = 551 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 9/76 (11%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 C C C A+CP +A+ C+ CG+C++ACP Sbjct: 414 CDTTDCTLCMSCVAVCPTRALHAIGDRPGLL---------FIEEDCVQCGMCEKACPEKV 464 Query: 118 IVEGPNFEFATETRQE 133 I P F + R+E Sbjct: 465 ISLEPRFNWDWHARKE 480 Score = 35.1 bits (79), Expect = 3.0, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR--YDIDMIKCIYCGL 108 E C+ C +CE CP + I++E R+ R ++ CI CG Sbjct: 448 EDCVQCGMCEKACPEKVISLEPRFNWDWHARKEARLVHEEPAACCISCGN 497 Score = 33.5 bits (75), Expect = 9.8, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 11/53 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C CPA A++ + ID C G C ACP +AI Sbjct: 190 CDRCLDACPACALSSDGAEIA-----------IDPYLCQGVGTCATACPTEAI 231 >gi|84997525|ref|XP_953484.1| RNAse L inhibitor protein [Theileria annulata strain Ankara] gi|65304480|emb|CAI76859.1| RNAse L inhibitor protein, putative [Theileria annulata] Length = 636 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 33/83 (39%), Gaps = 1/83 (1%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 K + GE+ LR ++C K C C ++G +C + + I Sbjct: 6 KAKPNESGMGENKLRIAIVSSDKCKP-KKCRQECKRTCPVTKTGKQCIEVDPTSKIAFIS 64 Query: 100 MIKCIYCGLCQEACPVDAIVEGP 122 CI CG+C + CP +AI Sbjct: 65 EHLCIGCGICVKKCPFEAITIIN 87 >gi|254226570|ref|ZP_04920152.1| iron-sulfur cluster-binding protein [Vibrio cholerae V51] gi|125620906|gb|EAZ49258.1| iron-sulfur cluster-binding protein [Vibrio cholerae V51] Length = 553 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 9/75 (12%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C A+CP +A+ C+ CGLC +ACP A+ Sbjct: 418 SDCTLCMSCVAVCPTRALHPAGDSPA---------LRFIEQDCVQCGLCVKACPEQALSA 468 Query: 121 GPNFEFATETRQELY 135 P + RQ + Sbjct: 469 TPQLNWNKAARQGVV 483 Score = 40.9 bits (94), Expect = 0.058, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 14/81 (17%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 C+ C CPA A++ E + R I+ C G C ACP +AI + Sbjct: 186 CERCVDACPAGALSSEGSDQTGH------RIQINPYLCQGVGTCATACPTEAIH----YA 235 Query: 126 FA-TETRQELYYDKERLLNNG 145 Q+ ERLL N Sbjct: 236 LPNPTDTQKFI---ERLLANY 253 Score = 33.9 bits (76), Expect = 7.4, Method: Composition-based stats. Identities = 6/23 (26%), Positives = 8/23 (34%) Query: 97 DIDMIKCIYCGLCQEACPVDAIV 119 + C C C CP A+ Sbjct: 414 ECQASDCTLCMSCVAVCPTRALH 436 >gi|319902900|ref|YP_004162628.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Bacteroides helcogenes P 36-108] gi|319417931|gb|ADV45042.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Bacteroides helcogenes P 36-108] Length = 1185 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 28/81 (34%), Gaps = 15/81 (18%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG A N E CI C C +CP A + T Sbjct: 676 RGVAAFVPEWN-AENCIQCNKCAYVCPHASIRPFVLDAEEQKGADFTQLKAVGKAFDGMT 734 Query: 94 VRYDIDMIKCIYCGLCQEACP 114 R +D++ C+ CG C + CP Sbjct: 735 FRIQVDVLDCLGCGNCADVCP 755 >gi|317485394|ref|ZP_07944273.1| ferredoxin oxidoreductase [Bilophila wadsworthia 3_1_6] gi|316923353|gb|EFV44560.1| ferredoxin oxidoreductase [Bilophila wadsworthia 3_1_6] Length = 1198 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 32/116 (27%), Gaps = 20/116 (17%) Query: 29 KAKTTINYPF--EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC 86 K + P T+ + A+ E CI C C +CP AI Sbjct: 662 KLPVSAFEPDGLVPLGTTAYEKRGVAVNIPEWISENCIQCCQCSFVCPHAAIRPVLATEE 721 Query: 87 HDGTRRTV----------------RYDIDMIKCIYCGLCQEACP--VDAIVEGPNF 124 R + C+ CG C E CP A+V P Sbjct: 722 ELSCAPDTFVTKDAIGKELKGLKFRIQVYAEDCLGCGSCAEVCPAKTKALVMKPLH 777 >gi|301059375|ref|ZP_07200302.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] gi|300446604|gb|EFK10442.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] Length = 415 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 30/101 (29%), Positives = 40/101 (39%), Gaps = 19/101 (18%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICP---AQAITIESGPRCHDGTRRTV----RYDI 98 FR ++CIAC C CP A G R + +Y I Sbjct: 92 DFRVHVTRHPRYVDVDKCIACGACAEKCPKKVPNAYDGGLGKRKAIYVKYPQAVPLKYAI 151 Query: 99 DMIKCIY-----CGLCQEACPVDAIVEGPNFEFATETRQEL 134 D CI CG+C++ CP DAI N+E + R+EL Sbjct: 152 DDRFCIKLTKGKCGICEKICPADAI----NYE---DKREEL 185 >gi|255524401|ref|ZP_05391358.1| dihydroorotate dehydrogenase family protein [Clostridium carboxidivorans P7] gi|296187521|ref|ZP_06855916.1| dihydropyrimidine dehydrogenase [Clostridium carboxidivorans P7] gi|255511958|gb|EET88241.1| dihydroorotate dehydrogenase family protein [Clostridium carboxidivorans P7] gi|296048043|gb|EFG87482.1| dihydropyrimidine dehydrogenase [Clostridium carboxidivorans P7] Length = 412 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/84 (17%), Positives = 25/84 (29%), Gaps = 6/84 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + ++CI C C C A + + I+ Sbjct: 324 VPAENLDRDYIVYPKYDTDKCIGCGRCYISCYDGAH------QAVVWDEENRKPSINKDN 377 Query: 103 CIYCGLCQEACPVDAIVEGPNFEF 126 C+ C LC CP++ + EF Sbjct: 378 CVGCHLCALVCPIEGCITKGEIEF 401 >gi|251780214|ref|ZP_04823134.1| nitroreductase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084529|gb|EES50419.1| nitroreductase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 258 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 36/103 (34%), Gaps = 12/103 (11%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ CI C LC+ CP ITI +I CI C C+ CP AI Sbjct: 10 NKDLCIGCGLCKNDCPVNNITIIDKKS-----------NIKNQNCIKCCHCEAICPTKAI 58 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161 E E ++ D LL + I + + P Sbjct: 59 TITGFNELPIELAKQPILDSNELL-MAIKSRRTIRKFKNKEVP 100 Score = 34.3 bits (77), Expect = 5.4, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 16/33 (48%) Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + +++ CI CGLC+ CPV+ I Sbjct: 1 MKEQHVIEVNKDLCIGCGLCKNDCPVNNITIID 33 >gi|237796195|ref|YP_002863747.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum Ba4 str. 657] gi|229260863|gb|ACQ51896.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum Ba4 str. 657] Length = 1192 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 24/88 (27%), Gaps = 16/88 (18%) Query: 51 HALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY 96 A+ ++CI C C +CP A Sbjct: 677 IAINVPEWQLDKCIQCNQCSYVCPHAVIRPVLLSDEEVKNAPEGFESKPAAGAKGLNFTM 736 Query: 97 DIDMIKCIYCGLCQEACP--VDAIVEGP 122 I C CG C + CP A+V P Sbjct: 737 AISPYDCTGCGNCADVCPAKEKALVMKP 764 >gi|228474762|ref|ZP_04059493.1| formate dehydrogenase, alpha subunit [Staphylococcus hominis SK119] gi|228271425|gb|EEK12793.1| formate dehydrogenase, alpha subunit [Staphylococcus hominis SK119] Length = 983 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 13/96 (13%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P+EK Y ++CI C C C + R + Sbjct: 131 PYEKDYGP----------FYRYDPDQCILCGRCVEACQDVEVNETLSIDWDREHPRVIWD 180 Query: 97 D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 + I+ C+ CG C CP +A++E A Sbjct: 181 NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGY 216 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 17/68 (25%), Gaps = 8/68 (11%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105 R C C CE A Y D +CI Sbjct: 90 RILEKHMLYCTVCDYNNGDCEIHNAMDAWGLQEQSYEYKTKPYEKDYGPFYRYDPDQCIL 149 Query: 106 CGLCQEAC 113 CG C EAC Sbjct: 150 CGRCVEAC 157 >gi|210623066|ref|ZP_03293553.1| hypothetical protein CLOHIR_01503 [Clostridium hiranonis DSM 13275] gi|210153869|gb|EEA84875.1| hypothetical protein CLOHIR_01503 [Clostridium hiranonis DSM 13275] Length = 306 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 38/103 (36%), Gaps = 13/103 (12%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 T P+ + L + +++CI C C C +I ++G + + Sbjct: 48 KTEPKKEAYYGLPKAVIDQDKCIQCGKCMENCRFDSIMEKNGE-----------FSVKKF 96 Query: 102 KCIYCGLCQEACPVDAIVEGPNF--EFATETRQELYYDKERLL 142 C CG+C+ CP AI + + ++ + +L Sbjct: 97 GCEGCGVCEYVCPSSAITMQKSAAGDTMIYKDEDRVFSTAKLY 139 >gi|187935352|ref|YP_001886203.1| nitroreductase family protein fused to ferredoxin domain [Clostridium botulinum B str. Eklund 17B] gi|187723505|gb|ACD24726.1| nitroreductase family protein [Clostridium botulinum B str. Eklund 17B] Length = 273 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 14/102 (13%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + +E+CI+CK C CP I + +I CI CG C CP Sbjct: 1 MFKVNKEKCISCKQCINDCPVSDILLIDSKA-----------NIKNEACIKCGHCIAICP 49 Query: 115 VDAIV--EGPNFEFATETRQELYYDKERLLNNGDRWESEIVR 154 +A+ + E + E + + + LL N ++ + + Sbjct: 50 TNAVSTADYNMDEVKEYNKDEFFIEADNLL-NFIKFRRSVRK 90 >gi|168183176|ref|ZP_02617840.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum Bf] gi|182673633|gb|EDT85594.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum Bf] Length = 1192 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 24/88 (27%), Gaps = 16/88 (18%) Query: 51 HALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY 96 A+ ++CI C C +CP A Sbjct: 677 IAINVPEWQLDKCIQCNQCSYVCPHAVIRPVLLSDEEVKNAPEGFESKPAAGAKGLNFTM 736 Query: 97 DIDMIKCIYCGLCQEACP--VDAIVEGP 122 I C CG C + CP A+V P Sbjct: 737 AISPYDCTGCGNCADVCPAKEKALVMKP 764 >gi|169824852|ref|YP_001692463.1| NADP-reducing hydrogenase [Finegoldia magna ATCC 29328] gi|167831657|dbj|BAG08573.1| NADP-reducing hydrogenase [Finegoldia magna ATCC 29328] Length = 626 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 16/96 (16%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 L+Y F+ + + +K AL Y ++CI C C CP I Sbjct: 544 TLKY-FRNEYEAHIYDKKCPAHAC----KALLSYEI-TDKCIGCTKCAKNCPVSCIEGAV 597 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + + ID +CI CG C+ CPV A+ Sbjct: 598 KKQ----------HVIDKSQCIKCGNCETVCPVHAV 623 >gi|126700933|ref|YP_001089830.1| hydrogenase [Clostridium difficile 630] gi|115252370|emb|CAJ70211.1| Iron hydrogenase [Clostridium difficile] Length = 461 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 10/83 (12%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 ++ C C+ C +CP AI E G I++ +C+ CG C Sbjct: 1 MTFMIINIDKDLCTGCRECSKVCPVNAIEGEEGKPQE----------INLDRCVMCGQCV 50 Query: 111 EACPVDAIVEGPNFEFATETRQE 133 + C A V FEF E +QE Sbjct: 51 QTCKSYASVIDEGFEFLQEKKQE 73 >gi|330864200|emb|CBX74261.1| electron transport complex protein rnfC [Yersinia enterocolitica W22703] Length = 412 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 3/103 (2%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C LC CPA + + G + ++ CI CG C CP I Sbjct: 214 QSCIRCGLCVDACPAG-LLPQQLYWFSRGEEHEKARNHNIFDCIECGACAYVCP-SNIPL 271 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + + L + ER R+E++ R + + R Sbjct: 272 VQYYRQEKAEIRTLDQEAERAAQAKARFEAKQAR-LEREKIAR 313 >gi|298529028|ref|ZP_07016431.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfonatronospira thiodismutans ASO3-1] gi|298510464|gb|EFI34367.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfonatronospira thiodismutans ASO3-1] Length = 670 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 7/67 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+C C +C +CP AIT++ R +IDM C CG+C ACP AI Sbjct: 599 HTEKCSGCGICVPLCPYDAITMKMVDDHP-------RAEIDMTACKGCGVCTTACPSAAI 651 Query: 119 VEGPNFE 125 V E Sbjct: 652 VLHGYEE 658 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 10/24 (41%), Positives = 13/24 (54%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVE 120 ++ KC CG+C CP DAI Sbjct: 597 EVHTEKCSGCGICVPLCPYDAITM 620 >gi|254475789|ref|ZP_05089175.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ruegeria sp. R11] gi|214030032|gb|EEB70867.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ruegeria sp. R11] Length = 649 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 34/119 (28%), Gaps = 14/119 (11%) Query: 23 CLRYFFKAKTTINYPFE-KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 R + P L ++C C C ++CP+ A+ Sbjct: 464 TRRQITRQAAKALMPDADMLPLPEGAPYGAVLVA----SDKCTLCLSCVSLCPSGALGDN 519 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140 + C+ CGLC CP +AI P + ++ +E Sbjct: 520 PD---------LPQLRFQEDACLQCGLCANVCPENAISYEPRLNLTSAALSQVVLHEEE 569 Score = 38.9 bits (89), Expect = 0.26, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 11/55 (20%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C +CP AI+ + ID + C CG C CP AI Sbjct: 276 TGCTRCLDVCPTGAISPDGD-----------HVSIDPMICAGCGSCASLCPSGAI 319 >gi|218248649|ref|YP_002374020.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [Cyanothece sp. PCC 8801] gi|218169127|gb|ACK67864.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Cyanothece sp. PCC 8801] Length = 1212 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 27/105 (25%), Gaps = 26/105 (24%) Query: 58 NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTV----RYDID 99 + CI C C +CP A D + + Sbjct: 688 WDPDVCIQCGKCVLVCPHAVIRSKVYEETALVNAPETFKTASAKDLDWKKTALKFTIQVA 747 Query: 100 MIKCIYCGLCQEACPV--------DAIVEGPNFEFATETRQELYY 136 C CG+C + CP AI P + R+ Y Sbjct: 748 AEDCTGCGVCVDVCPAKNKSQPKLKAINMAPQLPIRDQERENWDY 792 >gi|197122025|ref|YP_002133976.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Anaeromyxobacter sp. K] gi|196171874|gb|ACG72847.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Anaeromyxobacter sp. K] Length = 438 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 10/86 (11%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + ERC+ C C CP AI P R+ R +D +C+ CG+C C A Sbjct: 290 SDRERCLGCGKCSKRCPVGAIPRVPDPDPRF--RKHGRPQVDEARCLGCGVCTLTCNPGA 347 Query: 118 IVEGPNFEFATETRQELYYDKERLLN 143 + R + E L Sbjct: 348 MKLHH--------RTQRVLHPEDLFE 365 >gi|126700741|ref|YP_001089638.1| putative nitroreductase [Clostridium difficile 630] gi|115252178|emb|CAJ70016.1| putative nitroreductase [Clostridium difficile] Length = 260 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 31/95 (32%), Gaps = 11/95 (11%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 +E CI C LC+ CP I IE+ I C+ CG Sbjct: 1 MNMKYQHIIEVDKELCIGCGLCKNDCPVNNIIIENKKSV-----------IKKQDCLMCG 49 Query: 108 LCQEACPVDAIVEGPNFEFATETRQELYYDKERLL 142 C CP AI E E + D + LL Sbjct: 50 HCAAICPTKAITLTGFDEPPIELTNKPKLDSDELL 84 >gi|256003667|ref|ZP_05428656.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Clostridium thermocellum DSM 2360] gi|281416610|ref|ZP_06247630.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Clostridium thermocellum JW20] gi|255992458|gb|EEU02551.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Clostridium thermocellum DSM 2360] gi|281408012|gb|EFB38270.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Clostridium thermocellum JW20] gi|316939719|gb|ADU73753.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Clostridium thermocellum DSM 1313] Length = 1175 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 38/134 (28%), Gaps = 41/134 (30%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA----------------ITIE 81 +EK +P ++CI C C +CP Sbjct: 672 YEKRGIAPMIPEWQI--------DKCIQCGQCSFVCPHSTIRLFLLNDEELSRAPETFTT 723 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV--DAIVEGP----------NFEFATE 129 R + + C CG C + CP A++ P N+EFA Sbjct: 724 KKAIGKGFENLHFRVQVSPLDCTGCGNCADVCPTKEKALIMKPAEEQIEKQADNWEFAMT 783 Query: 130 TRQELYYDKERLLN 143 K+ LL+ Sbjct: 784 -----VTQKDNLLD 792 >gi|113971582|ref|YP_735375.1| hydrogenases, Fe-only [Shewanella sp. MR-4] gi|113886266|gb|ABI40318.1| hydrogenases, Fe-only [Shewanella sp. MR-4] Length = 410 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +C C C+ CP AI SG + ID KC+ CG C CP AI Sbjct: 18 NASKCKGCDACKQFCPTHAINGASG----------AVHSIDEDKCLSCGQCLINCPFSAI 67 Query: 119 VEGP 122 E Sbjct: 68 EETH 71 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 9/22 (40%), Positives = 12/22 (54%) Query: 98 IDMIKCIYCGLCQEACPVDAIV 119 I+ KC C C++ CP AI Sbjct: 17 INASKCKGCDACKQFCPTHAIN 38 >gi|120553868|ref|YP_958219.1| electron transport complex, RnfABCDGE type, C subunit [Marinobacter aquaeolei VT8] gi|120323717|gb|ABM18032.1| electron transport complex, RnfABCDGE type, C subunit [Marinobacter aquaeolei VT8] Length = 609 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 12/99 (12%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C CP + + + G + +++ CI CG C CP +I Sbjct: 367 QPCIRCGQCAEACPMELLPQQLFWYSKAGEFEKAEH-LNLFDCIECGACSYVCP-SSIPL 424 Query: 121 GPNFEFAT----ETR-QELYYDKERLLNNGDRWESEIVR 154 + FA R ++L D+ R +R+E+ R Sbjct: 425 VQYYRFAKGEIRTQRAEQLKADRAR-----ERFEARQAR 458 >gi|330828886|ref|YP_004391838.1| NAD-dependent formate dehydrogenase subunit alpha [Aeromonas veronii B565] gi|328804022|gb|AEB49221.1| NAD-dependent formate dehydrogenase alpha subunit [Aeromonas veronii B565] Length = 1396 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 22/66 (33%), Gaps = 6/66 (9%) Query: 59 GEERCIACKLCEAICPAQA------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 RCI C C C QA S + + + C+ CG C + Sbjct: 615 DANRCIGCGQCVQTCGEQAVQGVLRFAKNSDGTLSNRPQFDTGLSMGDSHCVQCGACVQV 674 Query: 113 CPVDAI 118 CP A+ Sbjct: 675 CPTGAL 680 Score = 35.1 bits (79), Expect = 3.5, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 17/50 (34%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G+ C+ C C +CP A+ T I + CG+ Sbjct: 661 GDSHCVQCGACVQVCPTGALVDARDKSQGRTELLTPVNTICTYCGVGCGV 710 >gi|317492086|ref|ZP_07950517.1| electron transport complex [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919969|gb|EFV41297.1| electron transport complex [Enterobacteriaceae bacterium 9_2_54FAA] Length = 712 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 28/95 (29%), Gaps = 9/95 (9%) Query: 20 FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79 L + + P K S ++ E+ CI C C CPA + Sbjct: 343 MGFTLAHL-------SVPIVKISNCILAPSKNEFDE-AEEEQACIRCSQCADACPAG-LL 393 Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + G + CI CG C CP Sbjct: 394 PQQLYWFSRGKEHEKARQHHLFDCIECGACAYVCP 428 >gi|313812033|gb|EFS49747.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL083PA1] Length = 102 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 8/85 (9%) Query: 59 GEERCIACKLCEAICPAQAITIES--------GPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + C +C +C CPA ITI++ R + ID C+YCG+C Sbjct: 9 DVDACTSCMICARECPAWCITIDAHHEAVPDCDARRPRTVAVLDEFAIDWGLCMYCGMCI 68 Query: 111 EACPVDAIVEGPNFEFATETRQELY 135 E+CP DA+ + +R +L Sbjct: 69 ESCPFDALSWSDKRVSGSLSRTDLV 93 >gi|314935784|ref|ZP_07843136.1| formate dehydrogenase, alpha subunit [Staphylococcus hominis subsp. hominis C80] gi|313656349|gb|EFS20089.1| formate dehydrogenase, alpha subunit [Staphylococcus hominis subsp. hominis C80] Length = 983 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 13/96 (13%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P+EK Y ++CI C C C + R + Sbjct: 131 PYEKDYGP----------FYRYDPDQCILCGRCVEACQDVEVNETLSIDWDREHPRVIWD 180 Query: 97 D---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 + I+ C+ CG C CP +A++E A Sbjct: 181 NDVPINESSCVSCGQCATVCPCNAMMEVNMEGNAGY 216 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 17/68 (25%), Gaps = 8/68 (11%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105 R C C CE A Y D +CI Sbjct: 90 RILEKHMLYCTVCDYNNGDCEIHNAMDAWGLQEQSYEYKTKPYEKDYGPFYRYDPDQCIL 149 Query: 106 CGLCQEAC 113 CG C EAC Sbjct: 150 CGRCVEAC 157 >gi|309776013|ref|ZP_07671005.1| putative 4Fe-4S binding domain protein [Erysipelotrichaceae bacterium 3_1_53] gi|308916295|gb|EFP62043.1| putative 4Fe-4S binding domain protein [Erysipelotrichaceae bacterium 3_1_53] Length = 202 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 32/83 (38%), Gaps = 14/83 (16%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P E+ S R L++ + C+ C C CP Q I Sbjct: 130 QPIERFYFSIGKRQP--LKKGFQILDACVQCGSCLRSCPQQCIET------------GQP 175 Query: 96 YDIDMIKCIYCGLCQEACPVDAI 118 Y I C++CGLC E CPV AI Sbjct: 176 YIIVQKNCLHCGLCAEVCPVHAI 198 >gi|300870564|ref|YP_003785435.1| pyruvate oxireductase [Brachyspira pilosicoli 95/1000] gi|300688263|gb|ADK30934.1| pyruvate oxireductase [Brachyspira pilosicoli 95/1000] Length = 322 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 1/58 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-IDMIKCIYCGLCQEACPV 115 CI C CE +CP I E GP D + + ID C C C ACP Sbjct: 231 NPANCIDCANCEVVCPDLCIVWEKGPDRKDPNKTAMNMMGIDYQYCKGCLKCVRACPK 288 >gi|295111871|emb|CBL28621.1| Uncharacterized conserved protein [Synergistetes bacterium SGP1] Length = 203 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 12/66 (18%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L++ + E CI C C+A+CP AI+ + ID C+ CG C E Sbjct: 147 LKKGYHIMENCIGCGTCQAVCPQDAISS------------GTPFAIDESHCLQCGNCAEN 194 Query: 113 CPVDAI 118 CPV AI Sbjct: 195 CPVKAI 200 Score = 37.0 bits (84), Expect = 0.97, Method: Composition-based stats. Identities = 14/27 (51%), Positives = 14/27 (51%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNF 124 M CI CG CQ CP DAI G F Sbjct: 152 HIMENCIGCGTCQAVCPQDAISSGTPF 178 >gi|253577815|ref|ZP_04855087.1| NADH dehydrogenase I subunit F [Ruminococcus sp. 5_1_39B_FAA] gi|251850133|gb|EES78091.1| NADH dehydrogenase I subunit F [Ruminococcus sp. 5_1_39BFAA] Length = 623 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 10/68 (14%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 ALR++ E CI C C CPA AI+ + Y ID CI CG C++ Sbjct: 563 ALRQFHINPEFCIGCGKCAKNCPAGAIS----------GKIKHPYHIDNDICIKCGACKD 612 Query: 112 ACPVDAIV 119 C DA+ Sbjct: 613 NCNFDAVY 620 Score = 38.9 bits (89), Expect = 0.21, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 15/40 (37%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 I ++ I+ CI CG C + CP AI Sbjct: 550 HIRDKKCRAKVCTALRQFHINPEFCIGCGKCAKNCPAGAI 589 >gi|226330217|ref|ZP_03805735.1| hypothetical protein PROPEN_04130 [Proteus penneri ATCC 35198] gi|225201012|gb|EEG83366.1| hypothetical protein PROPEN_04130 [Proteus penneri ATCC 35198] Length = 530 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 1/58 (1%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 N EE CI C C CP+ + + G ++ CI CG C CP Sbjct: 99 DNLEEACIRCGHCVDACPSG-LLPQQLYWFSKGKEHEKAQQHNLFDCIECGACAFVCP 155 >gi|73748666|ref|YP_307905.1| hydrogenase subunit HymB [Dehalococcoides sp. CBDB1] gi|73660382|emb|CAI82989.1| hydrogenase subunit HymB [Dehalococcoides sp. CBDB1] Length = 640 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 10/64 (15%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 AL + ++C AC +C CP AI G + + I+ KCI CG C Sbjct: 557 KALLTFYIDPDKCKACMICARNCPTDAIKGGKG----------LIHTIEQGKCIKCGACV 606 Query: 111 EACP 114 + CP Sbjct: 607 DTCP 610 Score = 37.4 bits (85), Expect = 0.71, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 20/53 (37%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + I++ + + + ID KC C +C CP DAI G Sbjct: 536 KYFRHEYIDHIKNKHCEAGVCKALLTFYIDPDKCKACMICARNCPTDAIKGGK 588 >gi|150018923|ref|YP_001311177.1| NADH dehydrogenase (quinone) [Clostridium beijerinckii NCIMB 8052] gi|149905388|gb|ABR36221.1| NADH dehydrogenase (quinone) [Clostridium beijerinckii NCIMB 8052] Length = 626 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 25/66 (37%), Positives = 28/66 (42%), Gaps = 10/66 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L Y +E+C C C CP +AIT E Y ID KCI CG C E Sbjct: 568 LISYEIDKEKCRGCSKCAKGCPVEAITGEIKKP----------YVIDKSKCIKCGNCIEG 617 Query: 113 CPVDAI 118 C AI Sbjct: 618 CVFKAI 623 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 18/40 (45%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + + + Y+ID KC C C + CPV+AI Sbjct: 554 HVVDKKCSGGVCKSLISYEIDKEKCRGCSKCAKGCPVEAI 593 >gi|150019727|ref|YP_001311981.1| nitroreductase [Clostridium beijerinckii NCIMB 8052] gi|149906192|gb|ABR37025.1| nitroreductase [Clostridium beijerinckii NCIMB 8052] Length = 273 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 36/108 (33%), Gaps = 16/108 (14%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 +E+C+ C LC C I I +I ++C+ CG C CP Sbjct: 1 MMIVDKEKCVGCGLCVKDCFPNDIEINGNKA-----------EIKNVRCMKCGHCIAVCP 49 Query: 115 VDAIVEGPNFEFA---TETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 A+ + E + E+LL N ++ + + Sbjct: 50 KGAVS-TDEYNMEDVKDYNESEFKIESEKLL-NFIKFRRTTRQFKDKE 95 >gi|322806085|emb|CBZ03652.1| NAD-reducing hydrogenase subunit HoxF [Clostridium botulinum H04402 065] Length = 631 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 10/63 (15%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 + ++CI C C CP I + ++ I+ KCI CG C CPV Sbjct: 576 HYEITDKCIGCTKCARGCPVSCIIG----------KVKEKHFINQEKCIKCGNCYSVCPV 625 Query: 116 DAI 118 AI Sbjct: 626 GAI 628 Score = 37.8 bits (86), Expect = 0.58, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 16/39 (41%) Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RC GT + + + KCI C C CPV I Sbjct: 560 HVDEKRCPSGTCKNLLHYEITDKCIGCTKCARGCPVSCI 598 >gi|302336796|ref|YP_003802002.1| cobyrinic acid ac-diamide synthase [Spirochaeta smaragdinae DSM 11293] gi|301633981|gb|ADK79408.1| Cobyrinic acid ac-diamide synthase [Spirochaeta smaragdinae DSM 11293] Length = 290 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 21/72 (29%), Gaps = 11/72 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L E C C C + C A+ C CG C Sbjct: 57 LPVPQIDEAICTGCGACSSFCRYGALVRIGKKVMTF-----------PNLCHSCGACMMV 105 Query: 113 CPVDAIVEGPNF 124 CP AI E P+F Sbjct: 106 CPEGAISEKPSF 117 >gi|170758777|ref|YP_001788618.1| [Fe] hydrogenase [Clostridium botulinum A3 str. Loch Maree] gi|169405766|gb|ACA54177.1| [Fe] hydrogenase [Clostridium botulinum A3 str. Loch Maree] Length = 497 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 7/69 (10%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIKCIYCGLC 109 + +C C LC+ +CP AI P R I+ CI CG C Sbjct: 135 YIDQNKCRECGLCKKVCPYNAIVEVMRPCKKVCPTGALEINPEDKRAMIEKENCINCGAC 194 Query: 110 QEACPVDAI 118 ACP AI Sbjct: 195 MAACPFGAI 203 >gi|153801160|ref|ZP_01955746.1| iron-sulfur cluster-binding protein [Vibrio cholerae MZO-3] gi|124123280|gb|EAY42023.1| iron-sulfur cluster-binding protein [Vibrio cholerae MZO-3] Length = 553 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 9/75 (12%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C A+CP +A+ C+ CGLC +ACP A+ Sbjct: 418 SDCTLCMSCVAVCPTRALHPAGDSPA---------LRFIEQDCVQCGLCVKACPEQALSA 468 Query: 121 GPNFEFATETRQELY 135 P + RQ + Sbjct: 469 TPQLNWNKAARQGVV 483 Score = 40.9 bits (94), Expect = 0.060, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 14/81 (17%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 C+ C CPA A++ E + R I+ C G C ACP +AI + Sbjct: 186 CERCVDACPAGALSSEGSDQTGH------RIQINPYLCQGVGTCATACPTEAIH----YA 235 Query: 126 FA-TETRQELYYDKERLLNNG 145 Q+ ERLL N Sbjct: 236 LPNPTDTQKFI---ERLLANY 253 Score = 33.9 bits (76), Expect = 7.5, Method: Composition-based stats. Identities = 6/23 (26%), Positives = 8/23 (34%) Query: 97 DIDMIKCIYCGLCQEACPVDAIV 119 + C C C CP A+ Sbjct: 414 ECQASDCTLCMSCVAVCPTRALH 436 >gi|83590297|ref|YP_430306.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica ATCC 39073] gi|83573211|gb|ABC19763.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Moorella thermoacetica ATCC 39073] Length = 1067 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 11/59 (18%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C AC C +CP A I + R ID + C CG C ACP AI Sbjct: 875 CAACLTCVRVCPHGAPAI-----------KDHRSHIDPLLCQGCGACVAACPARAITLT 922 >gi|300854055|ref|YP_003779039.1| putative oxidoreductase [Clostridium ljungdahlii DSM 13528] gi|300434170|gb|ADK13937.1| putative oxidoreductase with a 2Fe-2S iron-sulfur cluster domain [Clostridium ljungdahlii DSM 13528] Length = 704 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 21/65 (32%), Gaps = 4/65 (6%) Query: 59 GEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 RCI+C C +C + E + C +CG C E CP Sbjct: 144 DLNRCISCGRCVRMCKEVRGVNVLNYEITEDDRIMVDIRKHNSLKEENCRFCGACVEVCP 203 Query: 115 VDAIV 119 A+ Sbjct: 204 TGALQ 208 >gi|289432692|ref|YP_003462565.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. GT] gi|288946412|gb|ADC74109.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. GT] Length = 640 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 10/64 (15%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 AL + ++C AC +C CP AI G + + I+ KCI CG C Sbjct: 557 KALLTFYIDPDKCKACMICARNCPTDAIKGGKG----------LIHTIEQGKCIKCGACV 606 Query: 111 EACP 114 + CP Sbjct: 607 DTCP 610 Score = 37.4 bits (85), Expect = 0.70, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 20/53 (37%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + I++ + + + ID KC C +C CP DAI G Sbjct: 536 KYFRHEYIDHIKNKHCEAGVCKALLTFYIDPDKCKACMICARNCPTDAIKGGK 588 >gi|238916582|ref|YP_002930099.1| coenzyme F420 hydrogenase [Eubacterium eligens ATCC 27750] gi|238871942|gb|ACR71652.1| coenzyme F420 hydrogenase [Eubacterium eligens ATCC 27750] Length = 299 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 11/58 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++CI C +CE C AIT++ G +D KC YCG C ++CP DA Sbjct: 176 DKCIGCGVCEKACRTGAITMQDGKVA-----------VDYDKCNYCGRCAKSCPTDAW 222 Score = 38.5 bits (88), Expect = 0.32, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 3/50 (6%) Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C + E G + KCI CG+C++AC AI Sbjct: 151 CQNNCLKAEENDVGIKGAADVKWIE---DKCIGCGVCEKACRTGAITMQD 197 >gi|164686864|ref|ZP_02210892.1| hypothetical protein CLOBAR_00460 [Clostridium bartlettii DSM 16795] gi|164604254|gb|EDQ97719.1| hypothetical protein CLOBAR_00460 [Clostridium bartlettii DSM 16795] Length = 273 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 39/108 (36%), Gaps = 16/108 (14%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + +E+CI C C CP I++ +I+ +C CG C CP Sbjct: 1 MFSVNKEKCIGCSQCVKDCPVSTISLVDNKA-----------EINNERCFKCGHCIAICP 49 Query: 115 VDAIVEGPNFEFAT---ETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 V+A+ ++ + + LL N ++ + R + Sbjct: 50 VEAVS-TDDYNMEDVIPYDNDSFTVEADNLL-NFIKFRRSVRRFKDKE 95 >gi|153938741|ref|YP_001390542.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum F str. Langeland] gi|152934637|gb|ABS40135.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum F str. Langeland] gi|295318623|gb|ADF99000.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum F str. 230613] Length = 1172 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 43/126 (34%), Gaps = 24/126 (19%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA---QAITIESGPRCHDGTRRTV--- 94 G+TS RG + ++CI C C ICP +A + + + Sbjct: 668 GTTSYEKRGIAVMIPEWQ-IDKCIQCNQCSYICPHSVIRAYLLNKDEKEKSPSAFETKKA 726 Query: 95 ----------RYDIDMIKCIYCGLCQEACPVD--AIVEGP---NFEFATETRQ--ELYYD 137 R I + C CG C + CP A++ E +E + Sbjct: 727 TGKGLEELGYRIQISPLDCTGCGNCADVCPAPGKALIMRNAEEQIEMQSENWEFGLNITT 786 Query: 138 KERLLN 143 KE L++ Sbjct: 787 KENLMD 792 >gi|153007710|ref|YP_001368925.1| dihydropyrimidine dehydrogenase [Ochrobactrum anthropi ATCC 49188] gi|151559598|gb|ABS13096.1| dihydroorotate dehydrogenase family protein [Ochrobactrum anthropi ATCC 49188] Length = 436 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 31/87 (35%), Gaps = 6/87 (6%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI C C A S +++ +C+ Sbjct: 330 QYLNLNYVTKARIDQDSCIKCGRCHI-----ACEDTSHQAITSLVNGARHFEVIDEECVG 384 Query: 106 CGLCQEACPV-DAIVEGPNFEFATETR 131 C LC CPV D I +F T+ Sbjct: 385 CNLCVNVCPVEDCITMEQIGDFDPRTK 411 >gi|20089581|ref|NP_615656.1| flavoprotein [Methanosarcina acetivorans C2A] gi|19914498|gb|AAM04136.1| flavoprotein [Methanosarcina acetivorans C2A] Length = 239 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 8/69 (11%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 Y ++C C+ C E+ P + V I+++KC CG+C+E C Sbjct: 144 MPYNIDRKQCRHCETC--------PPRENCPHGAITEKNGVTDQIELLKCKGCGICKELC 195 Query: 114 PVDAIVEGP 122 P +AI GP Sbjct: 196 PYNAIKGGP 204 >gi|147669425|ref|YP_001214243.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. BAV1] gi|146270373|gb|ABQ17365.1| NADH dehydrogenase (quinone) [Dehalococcoides sp. BAV1] Length = 640 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 10/64 (15%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 AL + ++C AC +C CP AI G + + I+ KCI CG C Sbjct: 557 KALLTFYIDPDKCKACMICARNCPTDAIKGGKG----------LIHTIEQGKCIKCGACV 606 Query: 111 EACP 114 + CP Sbjct: 607 DTCP 610 Score = 37.4 bits (85), Expect = 0.70, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 20/53 (37%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + I++ + + + ID KC C +C CP DAI G Sbjct: 536 KYFRHEYIDHIKNKHCEAGVCKALLTFYIDPDKCKACMICARNCPTDAIKGGK 588 >gi|226944039|ref|YP_002799112.1| electron transport complex protein RnfB [Azotobacter vinelandii DJ] gi|226718966|gb|ACO78137.1| Electron transport complex, subunit B [Azotobacter vinelandii DJ] Length = 187 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 34/103 (33%), Gaps = 10/103 (9%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100 GE E CI C C CP AI + + + Sbjct: 88 PEPLDAPEGEKPRMVARIREAECIGCTKCLQACPVDAIVGAA----------RHMHTVIA 137 Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLN 143 +C C LC E CPVD I P + + + +L RL+ Sbjct: 138 AECTGCDLCVEPCPVDCIDMLPIADTPQDWKWDLPLPPGRLIA 180 >gi|319789069|ref|YP_004150702.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermovibrio ammonificans HB-1] gi|317113571|gb|ADU96061.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermovibrio ammonificans HB-1] Length = 58 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 10/65 (15%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + E CI C C ++CP I + Y+I CI CG C E C Sbjct: 1 MAHKIDPELCIGCGACASVCPTNCIHPTDDGK----------YEIVAEDCIDCGACVEVC 50 Query: 114 PVDAI 118 P +AI Sbjct: 51 PTNAI 55 Score = 38.2 bits (87), Expect = 0.38, Method: Composition-based stats. Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 2/37 (5%) Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPN--FEFATET 130 + ID CI CG C CP + I + +E E Sbjct: 3 HKIDPELCIGCGACASVCPTNCIHPTDDGKYEIVAED 39 >gi|302379538|ref|ZP_07268023.1| protein HymB [Finegoldia magna ACS-171-V-Col3] gi|303234547|ref|ZP_07321184.1| protein HymB [Finegoldia magna BVS033A4] gi|302312445|gb|EFK94441.1| protein HymB [Finegoldia magna ACS-171-V-Col3] gi|302494381|gb|EFL54150.1| protein HymB [Finegoldia magna BVS033A4] Length = 626 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 16/96 (16%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 L+Y F+ + + +K AL Y ++CI C C CP I Sbjct: 544 TLKY-FRNEYEAHIYDKKCPAHAC----KALLSYEI-TDKCIGCTKCAKNCPVSCIEGAV 597 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + + ID +CI CG C+ CPV A+ Sbjct: 598 KKQ----------HVIDKSQCIKCGNCETVCPVHAV 623 >gi|282926858|ref|ZP_06334485.1| formate dehydrogenase [Staphylococcus aureus A10102] gi|282591309|gb|EFB96382.1| formate dehydrogenase [Staphylococcus aureus A10102] Length = 984 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 29/89 (32%), Gaps = 13/89 (14%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P+EK Y +CI C C C + R + Sbjct: 131 PYEKDYGP----------FYRYDPNQCILCGRCVEACQDIEVNETIRIDWDREHPRVIWD 180 Query: 97 D---IDMIKCIYCGLCQEACPVDAIVEGP 122 + I+ C+ CG C CP +A++E Sbjct: 181 NDVPINESSCVSCGQCATVCPCNAMMEVN 209 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 17/68 (25%), Gaps = 8/68 (11%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105 R C C CE A Y D +CI Sbjct: 90 RILEKHMLYCTVCDYNNGDCEIHNTMDAWGLQHQTYEYKEKPYEKDYGPFYRYDPNQCIL 149 Query: 106 CGLCQEAC 113 CG C EAC Sbjct: 150 CGRCVEAC 157 >gi|229520552|ref|ZP_04409976.1| iron-sulfur cluster-binding protein [Vibrio cholerae TM 11079-80] gi|229342376|gb|EEO07370.1| iron-sulfur cluster-binding protein [Vibrio cholerae TM 11079-80] Length = 553 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 9/75 (12%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C A+CP +A+ C+ CGLC +ACP A+ Sbjct: 418 SDCTLCMSCVAVCPTRALHPAGDSPA---------LRFIEQDCVQCGLCVKACPEQALSA 468 Query: 121 GPNFEFATETRQELY 135 P + RQ + Sbjct: 469 TPQLNWNKAARQGVV 483 Score = 40.9 bits (94), Expect = 0.058, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 14/81 (17%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 C+ C CPA A++ E + R I+ C G C ACP +AI + Sbjct: 186 CERCVDACPAGALSSEGTDQTGH------RIQINPYLCQGVGTCATACPTEAIH----YA 235 Query: 126 FA-TETRQELYYDKERLLNNG 145 Q+ ERLL N Sbjct: 236 LPNPTDTQKFI---ERLLANY 253 Score = 33.9 bits (76), Expect = 7.5, Method: Composition-based stats. Identities = 6/23 (26%), Positives = 8/23 (34%) Query: 97 DIDMIKCIYCGLCQEACPVDAIV 119 + C C C CP A+ Sbjct: 414 ECQTSDCTLCMSCVAVCPTRALH 436 >gi|188585339|ref|YP_001916884.1| formate dehydrogenase, alpha subunit [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350026|gb|ACB84296.1| formate dehydrogenase, alpha subunit [Natranaerobius thermophilus JW/NM-WN-LF] Length = 900 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 8/81 (9%) Query: 55 RYPNGEERCIACKLCEAIC--PAQAITIESGPRCHDGTRRTVRYD-IDMIKCIYCGLCQE 111 + +CI C C +IC A + R D + D + C +CG+C Sbjct: 147 FFFRDYGKCIMCGKCVSICAEINGAYVYDFMDRGFDSKVTSAFDDELQNTTCTFCGMCVN 206 Query: 112 ACPVDAIVEGPNFEFATETRQ 132 CPV A+V E + E R Sbjct: 207 VCPVGALV-----ERSVEWRS 222 Score = 33.9 bits (76), Expect = 8.1, Method: Composition-based stats. Identities = 8/51 (15%), Positives = 12/51 (23%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 C C +C +CP A+ S + C Sbjct: 191 DELQNTTCTFCGMCVNVCPVGALVERSVEWRSRPWEVDKVLTTCPYCGVGC 241 >gi|125975598|ref|YP_001039508.1| pyruvate flavodoxin/ferredoxin oxidoreductase-like protein [Clostridium thermocellum ATCC 27405] gi|125715823|gb|ABN54315.1| pyruvate flavodoxin/ferredoxin oxidoreductase-like protein [Clostridium thermocellum ATCC 27405] Length = 1178 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 38/134 (28%), Gaps = 41/134 (30%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA----------------ITIE 81 +EK +P ++CI C C +CP Sbjct: 675 YEKRGIAPMIPEWQI--------DKCIQCGQCSFVCPHSTIRLFLLNDEELSRAPETFTT 726 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV--DAIVEGP----------NFEFATE 129 R + + C CG C + CP A++ P N+EFA Sbjct: 727 KKAIGKGFENLHFRVQVSPLDCTGCGNCADVCPTKEKALIMKPAEEQIEKQADNWEFAMT 786 Query: 130 TRQELYYDKERLLN 143 K+ LL+ Sbjct: 787 -----VTQKDNLLD 795 >gi|90418415|ref|ZP_01226327.1| dihydroorotate dehydrogenase [Aurantimonas manganoxydans SI85-9A1] gi|90338087|gb|EAS51738.1| dihydroorotate dehydrogenase [Aurantimonas manganoxydans SI85-9A1] Length = 447 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 6/79 (7%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + +++CI+C C A S ++++ +C+ Sbjct: 329 QYLNLNYVTKARIDQDKCISCGRCHI-----ACEDTSHQAITSMLDGIRKFEVIDEECVG 383 Query: 106 CGLCQEACPV-DAIVEGPN 123 C LC + CPV D I Sbjct: 384 CNLCVDVCPVEDCITMERI 402 >gi|312879271|ref|ZP_07739071.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260] gi|310782562|gb|EFQ22960.1| NADH dehydrogenase (quinone) [Aminomonas paucivorans DSM 12260] Length = 621 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 31/91 (34%), Gaps = 14/91 (15%) Query: 36 YPFEKGSTSPRFRGEHA----LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 +P E + L E C+ C C+ CP AI+ E+ Sbjct: 535 FPEEYREHEEQGFCRAGVCTGLFVVRVTPESCVGCGACKRACPVGAISGETRQAHS---- 590 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 +D CI CG C + CP A+ P Sbjct: 591 ------VDPTACIGCGACLDTCPFGALSPAP 615 Score = 38.5 bits (88), Expect = 0.34, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 8/54 (14%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 E G + C+ CG C+ ACPV AI + ETRQ Sbjct: 542 HEEQGFCRAGVCTGLFVVRVTPESCVGCGACKRACPVGAI--------SGETRQ 587 >gi|309776276|ref|ZP_07671265.1| periplasmic [Fe] hydrogenase 1 [Erysipelotrichaceae bacterium 3_1_53] gi|308915956|gb|EFP61707.1| periplasmic [Fe] hydrogenase 1 [Erysipelotrichaceae bacterium 3_1_53] Length = 482 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 6/70 (8%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY------DIDMIKCIYCGL 108 ++C C C+ CP AI P +R ID KCI CG Sbjct: 127 HAFIDYDKCKECGACKNACPFNAIVETQRPCMKSCPVDAIRMGEDGLAKIDEAKCINCGA 186 Query: 109 CQEACPVDAI 118 CQ CP AI Sbjct: 187 CQAKCPFGAI 196 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 26/86 (30%), Gaps = 5/86 (5%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG-----TRRTVR 95 G ++ + E C C + + + Sbjct: 68 GKPPVPVENDNKRQIVRVIEAACDGCSIHKIQVTDNCRKCMAKACLSACKFDAIHMGEDH 127 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEG 121 ID KC CG C+ ACP +AIVE Sbjct: 128 AFIDYDKCKECGACKNACPFNAIVET 153 >gi|292488197|ref|YP_003531079.1| electron transport complex protein RnfB [Erwinia amylovora CFBP1430] gi|292899403|ref|YP_003538772.1| electron transport complex protein [Erwinia amylovora ATCC 49946] gi|291199251|emb|CBJ46368.1| electron transport complex protein [Erwinia amylovora ATCC 49946] gi|291553626|emb|CBA20671.1| Electron transport complex protein rnfB [Erwinia amylovora CFBP1430] gi|312172334|emb|CBX80591.1| Electron transport complex protein rnfB [Erwinia amylovora ATCC BAA-2158] Length = 191 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 27/96 (28%), Gaps = 10/96 (10%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E + + E CI C C CP AI + + + Sbjct: 92 EPQPLGDEETRQPERKVAWIDEANCIGCTKCIQACPVDAIVGAT----------RAMHTV 141 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134 C C LC CP D I P + +L Sbjct: 142 LSDICTGCDLCVAPCPTDCIEMRPVATTTANWKWDL 177 >gi|226323786|ref|ZP_03799304.1| hypothetical protein COPCOM_01561 [Coprococcus comes ATCC 27758] gi|225207970|gb|EEG90324.1| hypothetical protein COPCOM_01561 [Coprococcus comes ATCC 27758] Length = 1175 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 26/121 (21%), Positives = 33/121 (27%), Gaps = 21/121 (17%) Query: 28 FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA------------ 75 FK + P G+ + RG E CI C C +CP Sbjct: 657 FKDYVDGSTP--SGTAAYEKRGIAVDIPIWQ-SETCIQCNRCAYVCPHAAIRPVALTEEE 713 Query: 76 --QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP----VDAIVEGPNFEFATE 129 +A + C CG C CP A+V G E A E Sbjct: 714 LAKAPEGLKAIDMIGMPGMKFTMTVSAYDCTGCGSCANVCPGKKGEKALVMGNMEENAGE 773 Query: 130 T 130 Sbjct: 774 Q 774 >gi|159041649|ref|YP_001540901.1| thiamine pyrophosphate binding domain-containing protein [Caldivirga maquilingensis IC-167] gi|157920484|gb|ABW01911.1| thiamine pyrophosphate protein domain protein TPP-binding [Caldivirga maquilingensis IC-167] Length = 606 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 10/71 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + ++ + C AC +C + AI + ID C+ C +C + Sbjct: 535 IVKFTVDPDACKACGICYNLIACPAIAPLENRKA----------WIDPNMCVGCSVCAQV 584 Query: 113 CPVDAIVEGPN 123 CP +AI N Sbjct: 585 CPYNAIKPSGN 595 >gi|126459993|ref|YP_001056271.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Pyrobaculum calidifontis JCM 11548] gi|126249714|gb|ABO08805.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum calidifontis JCM 11548] Length = 369 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 10/62 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +CI C +C CP A+ +D C CGLC CPV+AI Sbjct: 83 DSGKCIWCGICAKACPFSAVKYAERKYVE----------VDYGLCADCGLCNAVCPVEAI 132 Query: 119 VE 120 Sbjct: 133 QM 134 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 11/77 (14%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C C C +CP A+++ R I CI CGLC E CP + Sbjct: 257 QGCTLCGACVNVCPTDALSL-----------REFELRIVPALCIGCGLCAEKCPEGVMRV 305 Query: 121 GPNFEFATETRQELYYD 137 + A R+ L+ D Sbjct: 306 SESPSPAPYERKTLFRD 322 >gi|113867168|ref|YP_725657.1| ferredoxin [Ralstonia eutropha H16] gi|113525944|emb|CAJ92289.1| Predicted NADH:ubiquinone oxidoreductase,subunit RnfB [Ralstonia eutropha H16] Length = 269 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 26/84 (30%), Gaps = 10/84 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E P E E CI C LC CP AI + + + Sbjct: 64 EPLPLDPERGSEQPRAVARIDESLCIGCTLCIQACPVDAIAGAAKQ----------MHTV 113 Query: 99 DMIKCIYCGLCQEACPVDAIVEGP 122 C C LC CPVD I P Sbjct: 114 IPDWCTGCDLCVAPCPVDCIDMVP 137 >gi|67924601|ref|ZP_00518015.1| Pyruvate decarboxylase:4Fe-4S ferredoxin, iron-sulfur binding:Pyruvate ferredoxin/flavodoxin oxidoreductase:Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal [Crocosphaera watsonii WH 8501] gi|67853552|gb|EAM48897.1| Pyruvate decarboxylase:4Fe-4S ferredoxin, iron-sulfur binding:Pyruvate ferredoxin/flavodoxin oxidoreductase:Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal [Crocosphaera watsonii WH 8501] Length = 1210 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 28/105 (26%), Gaps = 26/105 (24%) Query: 58 NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTV----RYDID 99 ++ C+ C C +CP A D R + Sbjct: 688 WDQDICVQCGKCVLVCPHAVIRSKVYEEAALTNAPVSFKSANAKDSDWRKTELKFTIQVA 747 Query: 100 MIKCIYCGLCQEACPV--------DAIVEGPNFEFATETRQELYY 136 C CG+C + CP AI P + R+ Y Sbjct: 748 AEDCTGCGVCVDVCPAKNKSQPKLKAINMAPQLPIREQERENWDY 792 >gi|323700272|ref|ZP_08112184.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfovibrio sp. ND132] gi|323460204|gb|EGB16069.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfovibrio desulfuricans ND132] Length = 1196 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 38/104 (36%), Gaps = 22/104 (21%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------------------ITIE 81 +TS + A+ + CI C C +CP A T+E Sbjct: 663 PTATSKYEKRGVAINVPQWIADNCIQCNQCAFVCPHAALRPVLLTEAELAGAPATFATVE 722 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV--DAIVEGPN 123 + + G R R ++ + C+ CG C + CP A+V P Sbjct: 723 AKGKDVQGMRY--RMQVNTLDCLGCGNCADICPAKDKALVMRPI 764 >gi|331683136|ref|ZP_08383737.1| electron transport complex protein RnfC [Escherichia coli H299] gi|331079351|gb|EGI50548.1| electron transport complex protein RnfC [Escherichia coli H299] Length = 624 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQNCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|300856866|ref|YP_003781850.1| putative iron-dependent hydrogenase [Clostridium ljungdahlii DSM 13528] gi|300436981|gb|ADK16748.1| putative iron-dependent hydrogenase [Clostridium ljungdahlii DSM 13528] Length = 495 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 7/69 (10%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTR-------RTVRYDIDMIKCIYCGLC 109 ++ C C +C+ +CP AI P + I+ KCI CG C Sbjct: 135 HINQDICKECGMCKKVCPYNAIAEVMRPCKKSCPTGALEINSKNRMAMIEKEKCINCGAC 194 Query: 110 QEACPVDAI 118 ACP A+ Sbjct: 195 MAACPFGAV 203 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 3/52 (5%) Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C + + + + R I+ C CG+C++ CP +AI E Sbjct: 110 CRGCIQHKCMEVCPAKAIS---KVDGRAHINQDICKECGMCKKVCPYNAIAE 158 >gi|167376288|ref|XP_001733938.1| pyruvate dehydrogenase [Entamoeba dispar SAW760] gi|165904771|gb|EDR29927.1| pyruvate dehydrogenase, putative [Entamoeba dispar SAW760] Length = 1163 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 28/87 (32%), Gaps = 16/87 (18%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTR---------------RTVRYDIDMIK 102 +C+ C +C CP AI G R + + Sbjct: 678 WEASKCVQCNMCSLYCPHAAIRCFYLTPEETGKAPAEFVQIDGKGQQAGYKFRIQVSAMD 737 Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATE 129 C C +C ACPV + P FE +E Sbjct: 738 CTGCEVCTTACPVKCLTMTP-FEQVSE 763 >gi|218780385|ref|YP_002431703.1| nitroreductase [Desulfatibacillum alkenivorans AK-01] gi|218761769|gb|ACL04235.1| nitroreductase [Desulfatibacillum alkenivorans AK-01] Length = 347 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 46/121 (38%), Gaps = 13/121 (10%) Query: 47 FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 F + + +E+CI C C CP Q + ++S + R +CI C Sbjct: 10 FPPKTDFPIFQVDDEKCIGCGRCVNSCPIQLLMLDSDKKARPNERYD------HFRCICC 63 Query: 107 GLCQEACPVDAIVEGPNFEFA-TETRQELYYD-----KERLL-NNGDRWESEIVRNIVTD 159 C +CP DAI ++ + + ++ + L NG ++E + T+ Sbjct: 64 QNCAASCPNDAITIQGDYRVHEGFWKNDNLFEGGKTFPDPLYSRNGAKYEDYEDQLTETE 123 Query: 160 S 160 Sbjct: 124 K 124 >gi|116872240|ref|YP_849021.1| pyruvate-flavodoxin oxidoreductase [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741118|emb|CAK20238.1| pyruvate-flavodoxin oxidoreductase [Listeria welshimeri serovar 6b str. SLCC5334] Length = 1217 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 34/105 (32%), Gaps = 16/105 (15%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCH 87 T+ + AL E C C C +CP AI E Sbjct: 669 PPGTAAYEKRGIALEVPEWISENCTMCNECAFVCPHAAIRPILTNEEEMESAPEGFMTRE 728 Query: 88 DGTRRTVRYDID--MIKCIYCGLCQEACP--VDAIVEGPNFEFAT 128 + +RY I + C C LC E CP A+V P E A Sbjct: 729 MRGKDGLRYRIQVSPMDCTGCNLCAETCPAKEKALVMKPFEEVAE 773 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 5/80 (6%) Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV--EGPNFEFATETRQ 132 + A + G V I C C C CP AI E E+ Sbjct: 665 SGAYPPGTAAYEKRGIALEVPEWI-SENCTMCNECAFVCPHAAIRPILTNEEEM--ESAP 721 Query: 133 ELYYDKERLLNNGDRWESEI 152 E + +E +G R+ ++ Sbjct: 722 EGFMTREMRGKDGLRYRIQV 741 >gi|325958954|ref|YP_004290420.1| methyl-viologen-reducing hydrogenase subunit delta [Methanobacterium sp. AL-21] gi|325330386|gb|ADZ09448.1| methyl-viologen-reducing hydrogenase delta subunit [Methanobacterium sp. AL-21] Length = 777 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 30/89 (33%), Gaps = 7/89 (7%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC-------HDGTRRTVRY 96 S F + + +CI+C C +CP + + Y Sbjct: 235 SGNFNLLVEKKPSYVIKGKCISCGNCAEVCPVEVSDSWNEDMTTRKAIFKPFPQAVPDVY 294 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 ID C CG CQ+ C ++AI E Sbjct: 295 TIDHENCKKCGKCQDVCRMNAIDLDMETE 323 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 41/118 (34%), Gaps = 19/118 (16%) Query: 42 STSPRFRGEHALRRY--PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 S G L + +C C+ C IC +A I+ ID Sbjct: 565 KVSELIHGGVELEPFIAKVDNSKCNLCQKCIDICSFKAAFIQEN-----------VLKID 613 Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIV 157 I C CG C C +AI + +T ++L+ + +L N E I+ + Sbjct: 614 PIACNGCGACIAECETNAI------DIIGQTDEQLFAMIDGMLINKKPDEKRIIAFLD 665 >gi|325970481|ref|YP_004246672.1| cobyrinic acid ac-diamide synthase [Spirochaeta sp. Buddy] gi|324025719|gb|ADY12478.1| Cobyrinic acid ac-diamide synthase [Spirochaeta sp. Buddy] Length = 291 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 30/85 (35%), Gaps = 16/85 (18%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 FEK S F L + CIAC C +C A+ Y Sbjct: 48 FEKEQKSDYF----GLPKAVIDSSLCIACNRCFEVCRFDAVIPGP------------TYR 91 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 ID+I C C C CPV AI P Sbjct: 92 IDLITCEGCTYCLHVCPVGAIHTQP 116 >gi|289193249|ref|YP_003459190.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus sp. FS406-22] gi|288939699|gb|ADC70454.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus sp. FS406-22] Length = 354 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 25/73 (34%), Positives = 34/73 (46%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R R + C+ C +C ICP +AIT+ G + DID KC+ CG Sbjct: 16 RDGVEKRELMWNDYLCVGCGICYDICPTKAITMGPLGAIAKGIVDAPKLDIDENKCVLCG 75 Query: 108 LCQEACPVDAIVE 120 LC +CP DA+ Sbjct: 76 LCAASCPFDAMDL 88 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 +++C+ C+ CE +CP AI +E +I+ KC+ CG+C E CP DAI Sbjct: 113 QDKCVLCEQCEMVCPQGAIEVERDL-PERKKFVIGEININKEKCVLCGICAEYCPADAIN 171 Query: 120 EGPNF 124 N+ Sbjct: 172 LKYNY 176 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 34/71 (47%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R + + +E+C+ C +C CPA AI ++ + ++D C++C Sbjct: 140 RKKFVIGEININKEKCVLCGICAEYCPADAINLKYNYPTPTNPKPITDIEVDKDACVFCK 199 Query: 108 LCQEACPVDAI 118 +C+ CP DAI Sbjct: 200 VCEFVCPHDAI 210 Score = 42.4 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 8/83 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P F+GE + + C C+ C AICP A+ P+ + R Sbjct: 253 CPAGAIEVEKPFKGEVII-----DLDACNGCEACVAICPCNALEF---PKSEKKGEKVPR 304 Query: 96 YDIDMIKCIYCGLCQEACPVDAI 118 ++ C+ CG C +ACPV+AI Sbjct: 305 IIVNQNLCVLCGACAKACPVNAI 327 Score = 40.9 bits (94), Expect = 0.065, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 38/107 (35%), Gaps = 6/107 (5%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG-----PRCHDGTRRTV 94 G +G + E +C+ C LC A CP A+ ++ + Sbjct: 48 MGPLGAIAKGIVDAPKLDIDENKCVLCGLCAASCPFDAMDLKINGKSIKEDERYPKIKRK 107 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNF-EFATETRQELYYDKER 140 I KC+ C C+ CP AI + E E+ +KE+ Sbjct: 108 SIKIYQDKCVLCEQCEMVCPQGAIEVERDLPERKKFVIGEININKEK 154 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 8/80 (10%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR--------YDIDMIKCI 104 + ++ C+ CK+CE +CP AI + T + ++ C+ Sbjct: 185 ITDIEVDKDACVFCKVCEFVCPHDAIEVICYKCPFIKKIPTAKLYDDIKGKVTVNEELCV 244 Query: 105 YCGLCQEACPVDAIVEGPNF 124 CG C CP AI F Sbjct: 245 ACGWCAYICPAGAIEVEKPF 264 Score = 38.5 bits (88), Expect = 0.30, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 32/86 (37%), Gaps = 9/86 (10%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 PF K + + EE C+AC C ICPA AI +E + Sbjct: 216 KCPFIK-KIPTAKLYDDIKGKVTVNEELCVACGWCAYICPAGAIEVEKPFKGE------- 267 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVE 120 ID+ C C C CP +A+ Sbjct: 268 -VIIDLDACNGCEACVAICPCNALEF 292 Score = 35.1 bits (79), Expect = 3.3, Method: Composition-based stats. Identities = 10/20 (50%), Positives = 13/20 (65%) Query: 103 CIYCGLCQEACPVDAIVEGP 122 C+ CG+C + CP AI GP Sbjct: 31 CVGCGICYDICPTKAITMGP 50 >gi|254832206|ref|ZP_05236861.1| hypothetical protein Lmon1_12699 [Listeria monocytogenes 10403S] Length = 1215 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 34/104 (32%), Gaps = 16/104 (15%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCH 87 T+ + AL E C C C +CP AI E Sbjct: 669 PPGTAAYEKRGIALEVPEWISENCTMCNECAFVCPHAAIRPILTDEEEMESAPEGFMTRE 728 Query: 88 DGTRRTVRYDID--MIKCIYCGLCQEACP--VDAIVEGPNFEFA 127 + +RY I + C C LC E CP A+V P E A Sbjct: 729 MRGKDGLRYRIQVSPMDCTGCNLCAETCPAKEKALVMKPFEEVA 772 Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 5/80 (6%) Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV--EGPNFEFATETRQ 132 + A + G V I C C C CP AI E E+ Sbjct: 665 SGAYPPGTAAYEKRGIALEVPEWI-SENCTMCNECAFVCPHAAIRPILTDEEEM--ESAP 721 Query: 133 ELYYDKERLLNNGDRWESEI 152 E + +E +G R+ ++ Sbjct: 722 EGFMTREMRGKDGLRYRIQV 741 >gi|296126798|ref|YP_003634050.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit [Brachyspira murdochii DSM 12563] gi|296018614|gb|ADG71851.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit [Brachyspira murdochii DSM 12563] Length = 344 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 1/58 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-IDMIKCIYCGLCQEACPV 115 + CI C CE +CP I E GP D ++ + ID C C C ACP Sbjct: 252 NPKNCIDCANCEVVCPDLCIVWEKGPDRKDASKIAMNMMGIDYQYCKGCLKCVRACPK 309 >gi|224500444|ref|ZP_03668793.1| hypothetical protein LmonF1_12559 [Listeria monocytogenes Finland 1988] Length = 1215 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 34/104 (32%), Gaps = 16/104 (15%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCH 87 T+ + AL E C C C +CP AI E Sbjct: 669 PPGTAAYEKRGIALEVPEWISENCTMCNECAFVCPHAAIRPILTDEEEMESAPEGFMTRE 728 Query: 88 DGTRRTVRYDID--MIKCIYCGLCQEACP--VDAIVEGPNFEFA 127 + +RY I + C C LC E CP A+V P E A Sbjct: 729 MRGKDGLRYRIQVSPMDCTGCNLCAETCPAKEKALVMKPFEEVA 772 Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 5/80 (6%) Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV--EGPNFEFATETRQ 132 + A + G V I C C C CP AI E E+ Sbjct: 665 SGAYPPGTAAYEKRGIALEVPEWI-SENCTMCNECAFVCPHAAIRPILTDEEEM--ESAP 721 Query: 133 ELYYDKERLLNNGDRWESEI 152 E + +E +G R+ ++ Sbjct: 722 EGFMTREMRGKDGLRYRIQV 741 >gi|218548775|ref|YP_002382566.1| electron transport complex protein RnfC [Escherichia fergusonii ATCC 35469] gi|226735446|sp|B7LQP1|RNFC_ESCF3 RecName: Full=Electron transport complex protein rnfC gi|218356316|emb|CAQ88934.1| putative 4Fe-4S ferredoxin-type protein fused with unknown protein [Escherichia fergusonii ATCC 35469] Length = 726 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 36/112 (32%), Gaps = 9/112 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQGCIRCSSCADACPAD-LLPQQLYWFSKGQQHDKATAHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQELYY--DKERLLNNGDRWESEIVRNIVTDSP 161 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEERRAAEAKARFEARQARLEREKAARLERHKK 480 >gi|254828912|ref|ZP_05233599.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria monocytogenes FSL N3-165] gi|258601323|gb|EEW14648.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria monocytogenes FSL N3-165] Length = 1215 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 34/104 (32%), Gaps = 16/104 (15%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCH 87 T+ + AL E C C C +CP AI E Sbjct: 669 PPGTAAYEKRGIALEVPEWISENCTMCNECAFVCPHAAIRPILTDEEEMESAPEGFMTRE 728 Query: 88 DGTRRTVRYDID--MIKCIYCGLCQEACP--VDAIVEGPNFEFA 127 + +RY I + C C LC E CP A+V P E A Sbjct: 729 MRGKDGLRYRIQVSPMDCTGCNLCAETCPAKEKALVMKPFEEVA 772 Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 5/80 (6%) Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV--EGPNFEFATETRQ 132 + A + G V I C C C CP AI E E+ Sbjct: 665 SGAYPPGTAAYEKRGIALEVPEWI-SENCTMCNECAFVCPHAAIRPILTDEEEM--ESAP 721 Query: 133 ELYYDKERLLNNGDRWESEI 152 E + +E +G R+ ++ Sbjct: 722 EGFMTREMRGKDGLRYRIQV 741 >gi|153815664|ref|ZP_01968332.1| hypothetical protein RUMTOR_01900 [Ruminococcus torques ATCC 27756] gi|317501942|ref|ZP_07960126.1| Pyruvate:ferredoxin oxidoreductase [Lachnospiraceae bacterium 8_1_57FAA] gi|331088243|ref|ZP_08337162.1| pyruvate:ferredoxin oxidoreductase [Lachnospiraceae bacterium 3_1_46FAA] gi|145846905|gb|EDK23823.1| hypothetical protein RUMTOR_01900 [Ruminococcus torques ATCC 27756] gi|316896622|gb|EFV18709.1| Pyruvate:ferredoxin oxidoreductase [Lachnospiraceae bacterium 8_1_57FAA] gi|330408487|gb|EGG87953.1| pyruvate:ferredoxin oxidoreductase [Lachnospiraceae bacterium 3_1_46FAA] Length = 1181 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 32/99 (32%), Gaps = 19/99 (19%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQ-----AITIESGPRCHDGTRRTVRYDIDMIK 102 RG + CI C C +CP A+T E +G + + +K Sbjct: 680 RGIAVDIPIWQ-PDNCIQCNRCAYVCPHAVIRPVALTEEEAANAPEGMQSIPMIGMPDMK 738 Query: 103 ---------CIYCGLCQEACP----VDAIVEGPNFEFAT 128 C CG C CP A+V G E A Sbjct: 739 FAITVSAYDCTGCGSCANVCPGKKGEKALVMGNMEENAG 777 >gi|119872881|ref|YP_930888.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Pyrobaculum islandicum DSM 4184] gi|119674289|gb|ABL88545.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum islandicum DSM 4184] Length = 368 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 10/62 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + +CI C +C CPA A + +CI CGLC CPV+A+ Sbjct: 80 DQAKCIWCGMCVRSCPATAFEYVERKSI----------RVRYDRCIDCGLCNAVCPVEAV 129 Query: 119 VE 120 Sbjct: 130 KM 131 Score = 42.0 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 36/107 (33%), Gaps = 26/107 (24%) Query: 39 EKGSTSPRFRGEHALRRYPNGEER--------CIACKLCEAICPAQAITIESGPRCHDGT 90 EK P R + + G C C C +CP A++I Sbjct: 224 EKAPLQPGDRWQTRMLAVALGMSVGRVEVAGGCTLCGACVNVCPTDALSI---------- 273 Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 + + CI CG+C E CP I G TR++ Y+ Sbjct: 274 -KGFELRLTPALCIACGVCVEKCPEKVIKIGK-------TREDKPYE 312 >gi|147918998|ref|YP_687275.1| 2(4Fe-4S) ferredoxin-domain-containing protein [uncultured methanogenic archaeon RC-I] gi|110622671|emb|CAJ37949.1| 2(4Fe-4S) ferredoxin-domain protein [uncultured methanogenic archaeon RC-I] Length = 370 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 15/85 (17%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 + RG L E+ C+ C C A+CP A+ +E +D CI Sbjct: 182 DQHRGLRPLV----DEKGCVGCGRCAAVCPRIAVHMEQDIAV-----------VDDEVCI 226 Query: 105 YCGLCQEACPVDAIVEGPNFEFATE 129 CG C CPV +I + Sbjct: 227 GCGECMTVCPVGSISFNWEKDIVPF 251 >gi|88660702|gb|ABD48098.1| periplasmic Fe-hydrogenase large subunit [Shewanella decolorationis] Length = 410 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 24/64 (37%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +C C C+ CP AI SG ID KC+ CG C CP AI Sbjct: 18 NASKCKGCDACKQFCPTHAINGASGAAHS----------IDEDKCLSCGQCLINCPFSAI 67 Query: 119 VEGP 122 E Sbjct: 68 EETH 71 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 9/22 (40%), Positives = 12/22 (54%) Query: 98 IDMIKCIYCGLCQEACPVDAIV 119 I+ KC C C++ CP AI Sbjct: 17 INASKCKGCDACKQFCPTHAIN 38 >gi|47094835|ref|ZP_00232449.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria monocytogenes str. 1/2a F6854] gi|254898999|ref|ZP_05258923.1| hypothetical protein LmonJ_04260 [Listeria monocytogenes J0161] gi|254911513|ref|ZP_05261525.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria monocytogenes J2818] gi|254935839|ref|ZP_05267536.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria monocytogenes F6900] gi|47016717|gb|EAL07636.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria monocytogenes str. 1/2a F6854] gi|258608426|gb|EEW21034.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria monocytogenes F6900] gi|293589456|gb|EFF97790.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria monocytogenes J2818] Length = 1215 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 34/104 (32%), Gaps = 16/104 (15%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCH 87 T+ + AL E C C C +CP AI E Sbjct: 669 PPGTAAYEKRGIALEVPEWISENCTMCNECAFVCPHAAIRPILTDEEEMESAPEGFMTRE 728 Query: 88 DGTRRTVRYDID--MIKCIYCGLCQEACP--VDAIVEGPNFEFA 127 + +RY I + C C LC E CP A+V P E A Sbjct: 729 MRGKDGLRYRIQVSPMDCTGCNLCAETCPAKEKALVMKPFEEVA 772 Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 5/80 (6%) Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV--EGPNFEFATETRQ 132 + A + G V I C C C CP AI E E+ Sbjct: 665 SGAYPPGTAAYEKRGIALEVPEWI-SENCTMCNECAFVCPHAAIRPILTDEEEM--ESAP 721 Query: 133 ELYYDKERLLNNGDRWESEI 152 E + +E +G R+ ++ Sbjct: 722 EGFMTREMRGKDGLRYRIQV 741 >gi|332296158|ref|YP_004438081.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Thermodesulfobium narugense DSM 14796] gi|332179261|gb|AEE14950.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Thermodesulfobium narugense DSM 14796] Length = 676 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 7/63 (11%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++C C +C +CP AI+ G ++ ID C CG+C ACP AI Sbjct: 605 NPDKCSGCGICLPLCPYSAISW-----KEYGDKKRAH--IDPALCTGCGVCASACPSRAI 657 Query: 119 VEG 121 Sbjct: 658 TLH 660 Score = 37.8 bits (86), Expect = 0.58, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 20/46 (43%), Gaps = 3/46 (6%) Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 R + ID KC CG C EACP F + R+ +Y + Sbjct: 240 RKKQTYIDWDKCTGCGACVEACPGKV---DNEFNENMDKRKAVYIE 282 Score = 33.5 bits (75), Expect = 9.5, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 17/35 (48%), Gaps = 3/35 (8%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 +++ KC CG+C CP AI E+ + R Sbjct: 603 EVNPDKCSGCGICLPLCPYSAISWK---EYGDKKR 634 >gi|317483797|ref|ZP_07942737.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316924900|gb|EFV46046.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 419 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 6/53 (11%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 C C CE +CP AI +E GP +D +CI CG+C +C Sbjct: 288 NDCRGCGKCEKVCPVNAIHMEDGPAGKRFAF------VDPERCIGCGVCVRSC 334 Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats. Identities = 13/36 (36%), Positives = 16/36 (44%), Gaps = 5/36 (13%) Query: 101 IKCIYCGLCQEACPVDAIVE-----GPNFEFATETR 131 C CG C++ CPV+AI G F F R Sbjct: 288 NDCRGCGKCEKVCPVNAIHMEDGPAGKRFAFVDPER 323 >gi|294678551|ref|YP_003579166.1| NAD-dependent formate dehydrogenase subunit alpha [Rhodobacter capsulatus SB 1003] gi|294477371|gb|ADE86759.1| NAD-dependent formate dehydrogenase, alpha subunit [Rhodobacter capsulatus SB 1003] Length = 958 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 28/92 (30%), Gaps = 9/92 (9%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP--AQAITIESG 83 +F + T G +++ + +CI C C C + Sbjct: 152 HFARRDAT-------GPNPRYIPKDNSNPYFSYDPAKCIVCMRCVRACEEVQGTFALTVM 204 Query: 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 R D D C+ CG C +ACP Sbjct: 205 GRGFDARISPAAPDFLSSDCVSCGACVQACPT 236 >gi|291561240|emb|CBL40039.1| Iron only hydrogenase large subunit, C-terminal domain [butyrate-producing bacterium SS3/4] Length = 490 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 23/69 (33%), Gaps = 7/69 (10%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-------IDMIKCIYCGLC 109 C C C CP AI P + D ID KCI CG C Sbjct: 125 HIDPSVCKECGRCAQSCPYNAIAELIRPCRRACPVDAITMDPETGICQIDEKKCIQCGAC 184 Query: 110 QEACPVDAI 118 +CP AI Sbjct: 185 VRSCPFGAI 193 >gi|229529443|ref|ZP_04418833.1| iron-sulfur cluster-binding protein [Vibrio cholerae 12129(1)] gi|229333217|gb|EEN98703.1| iron-sulfur cluster-binding protein [Vibrio cholerae 12129(1)] Length = 553 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 9/75 (12%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C A+CP +A+ C+ CGLC +ACP A+ Sbjct: 418 SDCTLCMSCVAVCPTRALHPAGDSPA---------LRFIEQDCVQCGLCVKACPEQALSA 468 Query: 121 GPNFEFATETRQELY 135 P + RQ + Sbjct: 469 TPQLNWNKAARQGVV 483 Score = 40.9 bits (94), Expect = 0.061, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 14/81 (17%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 C+ C CPA A++ E + R I+ C G C ACP +AI + Sbjct: 186 CERCVDACPAGALSSEGSDQTGH------RIQINPYLCQGVGTCATACPTEAIH----YA 235 Query: 126 FA-TETRQELYYDKERLLNNG 145 Q+ ERLL N Sbjct: 236 LPNPTDTQKFI---ERLLANY 253 Score = 33.9 bits (76), Expect = 7.5, Method: Composition-based stats. Identities = 6/23 (26%), Positives = 8/23 (34%) Query: 97 DIDMIKCIYCGLCQEACPVDAIV 119 + C C C CP A+ Sbjct: 414 ECQTSDCTLCMSCVAVCPTRALH 436 >gi|90417027|ref|ZP_01224956.1| electron transport complex protein RnfB [marine gamma proteobacterium HTCC2207] gi|90331374|gb|EAS46618.1| electron transport complex protein RnfB [marine gamma proteobacterium HTCC2207] Length = 209 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 27/75 (36%), Gaps = 10/75 (13%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 E+ CI C C CP AI + + + + +C C LC Sbjct: 110 EVKTVAYIREDECIGCTKCIQACPVDAILGAAK----------LMHTVIADECTGCDLCV 159 Query: 111 EACPVDAIVEGPNFE 125 E CPVD I P E Sbjct: 160 EPCPVDCIDMLPVAE 174 >gi|28210533|ref|NP_781477.1| dihydropyrimidine dehydrogenase [Clostridium tetani E88] gi|28202970|gb|AAO35414.1| oxidoreductase iron-sulfur protein [Clostridium tetani E88] Length = 411 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 25/81 (30%), Gaps = 6/81 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + EE+CI C C C G + + ++ K Sbjct: 324 IPAEELDRGYIVYPNFHEEKCIGCGRCYISCYDG------GHQAIEWNTEERTVKLNKEK 377 Query: 103 CIYCGLCQEACPVDAIVEGPN 123 C+ C LC CPV I G Sbjct: 378 CVGCHLCSNVCPVQCIDYGEI 398 >gi|51244535|ref|YP_064419.1| NADP-reducing hydrogenase, 51 kDa subunit [Desulfotalea psychrophila LSv54] gi|50875572|emb|CAG35412.1| probable NADP-reducing hydrogenase, 51 kDa subunit [Desulfotalea psychrophila LSv54] Length = 634 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 10/63 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L + E+C C C CP AI+ E + + ID CI CG+C E Sbjct: 567 LISFHIDPEKCTGCTACARACPVSAISGE----------KRQVHQIDQALCIRCGVCLEK 616 Query: 113 CPV 115 CP Sbjct: 617 CPK 619 Score = 42.0 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 16/40 (40%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 I + + + ID KC C C ACPV AI Sbjct: 553 HIRDKACPACACKDLISFHIDPEKCTGCTACARACPVSAI 592 >gi|317471699|ref|ZP_07931040.1| respiratory-chain NADH dehydrogenase [Anaerostipes sp. 3_2_56FAA] gi|316900803|gb|EFV22776.1| respiratory-chain NADH dehydrogenase [Anaerostipes sp. 3_2_56FAA] Length = 629 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 28/70 (40%), Positives = 32/70 (45%), Gaps = 10/70 (14%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 +ALRR+ ERC C C CPA AI+ R Y ID KCI CG C+ Sbjct: 568 NALRRFIISPERCKGCSKCARNCPADAISG----------RIKEPYVIDNDKCIKCGACE 617 Query: 111 EACPVDAIVE 120 AC AI Sbjct: 618 SACAFGAIHI 627 >gi|315281501|ref|ZP_07870114.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Listeria marthii FSL S4-120] gi|313614849|gb|EFR88380.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Listeria marthii FSL S4-120] Length = 921 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 35/106 (33%), Gaps = 20/106 (18%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI----------------TIESG 83 T+ + AL E C C C +CP AI + Sbjct: 374 PPGTAAYEKRGIALEVPEWISENCTMCNECAFVCPHAAIRPILTDEEEMESAPDGFMTRE 433 Query: 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACP--VDAIVEGPNFEFA 127 R DG R R + + C C LC E CP A+V P E A Sbjct: 434 MRGKDGLRY--RIQVSPMDCTGCNLCAETCPAKEKALVMKPFEEVA 477 Score = 37.0 bits (84), Expect = 0.80, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 5/80 (6%) Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV--EGPNFEFATETRQ 132 + A + G V I C C C CP AI E E+ Sbjct: 370 SGAYPPGTAAYEKRGIALEVPEWI-SENCTMCNECAFVCPHAAIRPILTDEEEM--ESAP 426 Query: 133 ELYYDKERLLNNGDRWESEI 152 + + +E +G R+ ++ Sbjct: 427 DGFMTREMRGKDGLRYRIQV 446 >gi|291525395|emb|CBK90982.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Eubacterium rectale DSM 17629] Length = 289 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 11/65 (16%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + CI C +C C A+++E G R ID KC C C ++CP DA Sbjct: 164 HDDCIQCGVCVKACREGALSMEDG-----------RIVIDRDKCNNCARCVKSCPTDAWK 212 Query: 120 EGPNF 124 P + Sbjct: 213 GTPGY 217 Score = 35.1 bits (79), Expect = 3.6, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 15/45 (33%) Query: 78 ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 G + + + CI CG+C +AC A+ Sbjct: 142 NNCLKAEENDVGIKGGMTVECSHDDCIQCGVCVKACREGALSMED 186 >gi|289192278|ref|YP_003458219.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus sp. FS406-22] gi|288938728|gb|ADC69483.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus sp. FS406-22] Length = 356 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 1/77 (1%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R R +++C+ C+ CE +CP AI +E +I+ KC+ CG Sbjct: 102 RYPKIKRDIKIYQDKCVLCEQCEMVCPQGAIEVERDL-PERKKFVIGEININKEKCVLCG 160 Query: 108 LCQEACPVDAIVEGPNF 124 +C E CP DAI N+ Sbjct: 161 ICAEYCPADAINLKYNY 177 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 33/72 (45%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 GE R ++ C+ C +C ICP AI + G + DID C+ CG+ Sbjct: 19 GEVEKRELTWNDDACVGCGICADICPVSAIAMGPLGAIAKGDIIAPKLDIDKDVCVLCGM 78 Query: 109 CQEACPVDAIVE 120 C ACP DA+ Sbjct: 79 CASACPFDAMDL 90 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 34/71 (47%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R + + +E+C+ C +C CPA AI ++ + ++D C++C Sbjct: 141 RKKFVIGEININKEKCVLCGICAEYCPADAINLKYNYPTPTNPKPITDIEVDKDACVFCK 200 Query: 108 LCQEACPVDAI 118 +C+ CP DAI Sbjct: 201 VCEFVCPHDAI 211 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 39/106 (36%), Gaps = 5/106 (4%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT----IESGPRCHDGTRRTVR 95 G +G+ + ++ C+ C +C + CP A+ +S + Sbjct: 50 MGPLGAIAKGDIIAPKLDIDKDVCVLCGMCASACPFDAMDLKINGKSIKEDERYPKIKRD 109 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNF-EFATETRQELYYDKER 140 I KC+ C C+ CP AI + E E+ +KE+ Sbjct: 110 IKIYQDKCVLCEQCEMVCPQGAIEVERDLPERKKFVIGEININKEK 155 Score = 42.0 bits (97), Expect = 0.031, Method: Composition-based stats. Identities = 26/83 (31%), Positives = 36/83 (43%), Gaps = 8/83 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P F+GE + + C AC C AICP A+ P D + R Sbjct: 254 CPAGAIEVEKPFKGELII-----DVDACNACGACIAICPCSALEF---PAPKDKAEKVPR 305 Query: 96 YDIDMIKCIYCGLCQEACPVDAI 118 ++ C+ CG C +ACPV+AI Sbjct: 306 IIVNQNLCVLCGACAKACPVNAI 328 Score = 39.3 bits (90), Expect = 0.20, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 8/80 (10%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR--------YDIDMIKCI 104 + ++ C+ CK+CE +CP AI + + ++D C+ Sbjct: 186 ITDIEVDKDACVFCKVCEFVCPHDAIEVICYKCPMMKRIPQAKLYDDIKGKVNVDKDACV 245 Query: 105 YCGLCQEACPVDAIVEGPNF 124 CG C CP AI F Sbjct: 246 TCGWCAFICPAGAIEVEKPF 265 Score = 38.2 bits (87), Expect = 0.41, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 9/86 (10%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 P K + + ++ C+ C C ICPA AI +E + Sbjct: 217 KCPMMKR-IPQAKLYDDIKGKVNVDKDACVTCGWCAFICPAGAIEVEKPFKGEL------ 269 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVE 120 ID+ C CG C CP A+ Sbjct: 270 --IIDVDACNACGACIAICPCSALEF 293 >gi|254491922|ref|ZP_05105101.1| formate dehydrogenase, alpha subunit [Methylophaga thiooxidans DMS010] gi|224463400|gb|EEF79670.1| formate dehydrogenase, alpha subunit [Methylophaga thiooxydans DMS010] Length = 932 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 5/78 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114 + CI C C C + G G + +D + C+ CG C EACP Sbjct: 147 NMDACIQCTRCVRACRDEQNNDVIGLAM-RGNHTEIVFDLDDPMGESSCVACGECVEACP 205 Query: 115 VDAIVEGPNFEFATETRQ 132 A++ + ++ Sbjct: 206 TGALMPANDVAMVEPDKK 223 >gi|19548180|gb|AAL90459.1|AF446076_1 [Fe]-hydrogenase [Piromyces sp. E2] Length = 555 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 3/68 (4%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPV 115 +C+ C C C G G R ++ KC+ CG C + CPV Sbjct: 110 DMNKCVKCGRCVRACHHFQNINILGFINRAGYERVGTPMDRPMNFTKCVECGQCSQVCPV 169 Query: 116 DAIVEGPN 123 AI E Sbjct: 170 GAITERNE 177 >gi|328952767|ref|YP_004370101.1| formate dehydrogenase, alpha subunit [Desulfobacca acetoxidans DSM 11109] gi|328453091|gb|AEB08920.1| formate dehydrogenase, alpha subunit [Desulfobacca acetoxidans DSM 11109] Length = 902 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 30/86 (34%), Gaps = 5/86 (5%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDI 98 T F ++ L +CI C C C Q + + D+ Sbjct: 129 PPDTPYYFEDDNKLI--VRDFSKCIMCGRCVRACNEIQVNRAIQIGYRGSHNKIVAKSDL 186 Query: 99 DM--IKCIYCGLCQEACPVDAIVEGP 122 C++CG C +ACPV A+ E Sbjct: 187 PYKDSDCVFCGQCVQACPVGALTERK 212 >gi|315651462|ref|ZP_07904485.1| anaerobic sulfite reductase [Eubacterium saburreum DSM 3986] gi|315486282|gb|EFU76641.1| anaerobic sulfite reductase [Eubacterium saburreum DSM 3986] Length = 323 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 23/82 (28%), Gaps = 8/82 (9%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 G + +RC+ C+ C C + + + Sbjct: 151 KVRMNDFGIMGMTMPQYNPDRCVTCEACVKGC--------KQKSVEALRVVNGKIERNTE 202 Query: 102 KCIYCGLCQEACPVDAIVEGPN 123 KCI CG+C CP A Sbjct: 203 KCIGCGVCITVCPTRAWTRSKE 224 >gi|291528500|emb|CBK94086.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Eubacterium rectale M104/1] Length = 289 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 11/65 (16%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + CI C +C C A+++E G R ID KC C C ++CP DA Sbjct: 164 HDDCIQCGVCVKACREGALSMEDG-----------RIVIDRDKCNNCARCVKSCPTDAWK 212 Query: 120 EGPNF 124 P + Sbjct: 213 GTPGY 217 Score = 35.1 bits (79), Expect = 3.6, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 15/45 (33%) Query: 78 ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 G + + + CI CG+C +AC A+ Sbjct: 142 NNCLKAEENDVGIKGGMTVECSHDDCIQCGVCVKACREGALSMED 186 >gi|210623816|ref|ZP_03294065.1| hypothetical protein CLOHIR_02016 [Clostridium hiranonis DSM 13275] gi|210153311|gb|EEA84317.1| hypothetical protein CLOHIR_02016 [Clostridium hiranonis DSM 13275] Length = 266 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 12/80 (15%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 K + +R + + P G C C +C +CP AI+ E+ + Sbjct: 170 ELKPKGNKPYREYNGIPLKPKGSSACNGCGVCATVCPVGAISKENPKKVDK--------- 220 Query: 98 IDMIKCIYCGLCQEACPVDA 117 KCI C C +ACP +A Sbjct: 221 ---SKCISCMRCIKACPSNA 237 Score = 34.7 bits (78), Expect = 3.9, Method: Composition-based stats. Identities = 9/16 (56%), Positives = 10/16 (62%) Query: 103 CIYCGLCQEACPVDAI 118 C CG+C CPV AI Sbjct: 195 CNGCGVCATVCPVGAI 210 >gi|167835950|ref|ZP_02462833.1| ferredoxin [Burkholderia thailandensis MSMB43] Length = 170 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 27/81 (33%), Gaps = 10/81 (12%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 +P E A E+ CI C LC CP AI + I Sbjct: 66 PLNPEHGVERARPVAFIDEQLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVAE 115 Query: 102 KCIYCGLCQEACPVDAIVEGP 122 C C LC CPVD I P Sbjct: 116 LCTGCDLCVPPCPVDCIAMIP 136 >gi|121605833|ref|YP_983162.1| FAD/NAD(P)-binding oxidoreductase subunit [Polaromonas naphthalenivorans CJ2] gi|120594802|gb|ABM38241.1| benzoyl-CoA oxygenase, component A [Polaromonas naphthalenivorans CJ2] Length = 427 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 11/68 (16%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 H ++++ E CI C CEAICP AIT +S Y +D KC +C C Sbjct: 7 HVIKQHLIDPEICIRCNTCEAICPVSAITHDS-----------RNYVVDAEKCNFCMACI 55 Query: 111 EACPVDAI 118 CP +I Sbjct: 56 SPCPTGSI 63 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 14/30 (46%) Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++ ID CI C C+ CPV AI Sbjct: 7 HVIKQHLIDPEICIRCNTCEAICPVSAITH 36 >gi|310777828|ref|YP_003966161.1| electron transport complex, RnfABCDGE type, B subunit [Ilyobacter polytropus DSM 2926] gi|309747151|gb|ADO81813.1| electron transport complex, RnfABCDGE type, B subunit [Ilyobacter polytropus DSM 2926] Length = 334 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 27/60 (45%), Gaps = 8/60 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+CI C LC CP AIT E + +I KCI C C CPVDAI Sbjct: 243 DPEKCIQCGLCAIKCPTNAITSEVKE--------IKKAEIIEEKCIGCTACARVCPVDAI 294 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 31/89 (34%), Gaps = 11/89 (12%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 + P + T E N CI C +C CP AI + + Sbjct: 185 KRVISMTPQSQKVTVLCSSREKGAVARKNCSVACIGCGVCVRACPVDAIDLNNNLA---- 240 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ID KCI CGLC CP +AI Sbjct: 241 -------KIDPEKCIQCGLCAIKCPTNAI 262 Score = 41.2 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 5/70 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQEAC 113 E++C++C+ C CP + I++ + + V + CI CG+C AC Sbjct: 169 NEDKCVSCEKCVKECPKRVISMTPQSQKVTVLCSSREKGAVARKNCSVACIGCGVCVRAC 228 Query: 114 PVDAIVEGPN 123 PVDAI N Sbjct: 229 PVDAIDLNNN 238 Score = 40.5 bits (93), Expect = 0.088, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 10/81 (12%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 K T+ +++ EE+CI C C +CP AI E ++ + Sbjct: 256 KCPTNAITSEVKEIKKAEIIEEKCIGCTACARVCPVDAIEGE----------VKQKHKVI 305 Query: 100 MIKCIYCGLCQEACPVDAIVE 120 KCI C LC E C AI Sbjct: 306 EEKCIGCQLCYEKCKFGAIKI 326 Score = 39.7 bits (91), Expect = 0.12, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 24/74 (32%), Gaps = 10/74 (13%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 + C+ C A+CP AITI I+ KC+ C C Sbjct: 130 MLYFGGDKSCWHSCLGYGDCAAVCPVDAITITDKGVAV----------INEDKCVSCEKC 179 Query: 110 QEACPVDAIVEGPN 123 + CP I P Sbjct: 180 VKECPKRVISMTPQ 193 >gi|168184520|ref|ZP_02619184.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum Bf] gi|237795252|ref|YP_002862804.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum Ba4 str. 657] gi|182672370|gb|EDT84331.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum Bf] gi|229262705|gb|ACQ53738.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum Ba4 str. 657] Length = 631 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 10/63 (15%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 + ++CI C C CP I + ++ I+ KCI CG C ACPV Sbjct: 576 HYEITDKCIGCTKCARGCPVSCIIG----------KVKEKHFINQEKCIKCGNCYSACPV 625 Query: 116 DAI 118 AI Sbjct: 626 GAI 628 Score = 37.8 bits (86), Expect = 0.48, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 17/39 (43%) Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + RC GT + + + KCI C C CPV I Sbjct: 560 HVNEKRCPSGTCKNLLHYEITDKCIGCTKCARGCPVSCI 598 >gi|254286422|ref|ZP_04961380.1| iron-sulfur cluster-binding protein [Vibrio cholerae AM-19226] gi|150423589|gb|EDN15532.1| iron-sulfur cluster-binding protein [Vibrio cholerae AM-19226] Length = 553 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 9/75 (12%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C A+CP +A+ C+ CGLC +ACP A+ Sbjct: 418 SDCTLCMSCVAVCPTRALHPAGDSPA---------LRFIEQDCVQCGLCVKACPEQALSA 468 Query: 121 GPNFEFATETRQELY 135 P + RQ + Sbjct: 469 TPQLNWNKAARQGVV 483 Score = 41.6 bits (96), Expect = 0.036, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 14/81 (17%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 C+ C CPA A++ E + R I+ C G C ACP +AI + Sbjct: 186 CERCVDACPAGALSSEGSEQTGH------RIQINPYLCQGVGTCATACPTEAIH----YA 235 Query: 126 FA-TETRQELYYDKERLLNNG 145 Q+ ERLL N Sbjct: 236 LPNPTDTQKFI---ERLLANY 253 Score = 33.9 bits (76), Expect = 7.6, Method: Composition-based stats. Identities = 6/23 (26%), Positives = 8/23 (34%) Query: 97 DIDMIKCIYCGLCQEACPVDAIV 119 + C C C CP A+ Sbjct: 414 ECQTSDCTLCMSCVAVCPTRALH 436 >gi|153214796|ref|ZP_01949625.1| iron-sulfur cluster-binding protein [Vibrio cholerae 1587] gi|124115138|gb|EAY33958.1| iron-sulfur cluster-binding protein [Vibrio cholerae 1587] Length = 553 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 9/75 (12%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C A+CP +A+ C+ CGLC +ACP A+ Sbjct: 418 SDCTLCMSCVAVCPTRALHPAGDSPA---------LRFIEQDCVQCGLCVKACPEQALSA 468 Query: 121 GPNFEFATETRQELY 135 P + RQ + Sbjct: 469 TPQLNWNKAARQGVV 483 Score = 40.9 bits (94), Expect = 0.061, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 14/81 (17%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 C+ C CPA A++ E + R I+ C G C ACP +AI + Sbjct: 186 CERCVDACPAGALSSEGTDQTGH------RIQINPYLCQGVGTCATACPTEAIH----YA 235 Query: 126 FA-TETRQELYYDKERLLNNG 145 Q+ ERLL N Sbjct: 236 LPNPTDTQKFI---ERLLANY 253 Score = 33.9 bits (76), Expect = 7.9, Method: Composition-based stats. Identities = 6/23 (26%), Positives = 8/23 (34%) Query: 97 DIDMIKCIYCGLCQEACPVDAIV 119 + C C C CP A+ Sbjct: 414 ECQASDCTLCMSCVAVCPTRALH 436 >gi|134046740|ref|YP_001098225.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanococcus maripaludis C5] gi|132664365|gb|ABO36011.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Methanococcus maripaludis C5] Length = 395 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 1/75 (1%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E+C C C CP AI + + +++ + CI CG C CP A+ Sbjct: 266 EKCAYCGPCAIKCPTGAIKVVNPKGLELPSKKKTEKANEFAMCIRCGACAMKCPTGALKM 325 Query: 121 GP-NFEFATETRQEL 134 G E TR E Sbjct: 326 GNVVHEGKEYTRVEF 340 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 1/60 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++CI C +C CP AI +G + + ++ +CI C C E CP I Sbjct: 156 DTDKCIYCTVCSQTCPWNAIF-VAGKVPQKRQKTIKSFTVNEEECIGCEKCVEVCPGSMI 214 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 22/66 (33%), Gaps = 3/66 (4%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 N CI C C CP A+ + + R + C CG C + CP Sbjct: 303 NEFAMCIRCGACAMKCPTGALKM---GNVVHEGKEYTRVEFSPALCNECGECVDVCPQKT 359 Query: 118 IVEGPN 123 + + Sbjct: 360 LELTGD 365 Score = 39.3 bits (90), Expect = 0.16, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK-CIYCGLCQEACP 114 +P + C+ C+ C ICPA+ I++ + I + K C+ CG+C CP Sbjct: 84 FPYSKGHCVLCEKCVDICPAEIISLPGKVEKPKKEVVIPQEPIAVTKECVACGVCVPECP 143 Query: 115 VDAIVEGPN 123 VDAI Sbjct: 144 VDAISLEDI 152 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 12/59 (20%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C+AC +C CP AI++E ID KCIYC +C + CP +AI Sbjct: 130 KECVACGVCVPECPVDAISLEDIAV------------IDTDKCIYCTVCSQTCPWNAIF 176 Score = 35.1 bits (79), Expect = 3.1, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 26/75 (34%), Gaps = 1/75 (1%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103 +A N C AC LC CP + I++E + KC Sbjct: 210 PGSMIEYNAKDLGVNLPLACPACGLCVESCPVEVISLEVEYASAKPVTDEGLVWL-EEKC 268 Query: 104 IYCGLCQEACPVDAI 118 YCG C CP AI Sbjct: 269 AYCGPCAIKCPTGAI 283 Score = 33.9 bits (76), Expect = 6.9, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 17/78 (21%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDG-----------------TRRTVRYDIDMIK 102 + CI C C CP A+ ++ G +G + R+ Sbjct: 31 FKTCIQCFSCANACPTGALVVKDGKLVFNGSKCDLDGACAKACPQGIKKVDDRFPYSKGH 90 Query: 103 CIYCGLCQEACPVDAIVE 120 C+ C C + CP + I Sbjct: 91 CVLCEKCVDICPAEIISL 108 >gi|57640071|ref|YP_182549.1| indolepyruvate: ferredoxin oxidoreductase, alpha subunit [Thermococcus kodakarensis KOD1] gi|62296914|sp|O07835|IORA_PYRKO RecName: Full=Indolepyruvate oxidoreductase subunit iorA; Short=IOR; AltName: Full=Indolepyruvate ferredoxin oxidoreductase subunit alpha gi|57158395|dbj|BAD84325.1| indolepyruvate: ferredoxin oxidoreductase, alpha subunit [Thermococcus kodakarensis KOD1] Length = 647 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 26/78 (33%), Gaps = 9/78 (11%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R Y E++C CK+C AI + + +D C CG Sbjct: 579 RRGMKWPIYHVVEDKCTGCKICINAYGCPAIYWDPETKKA---------KVDPTMCWGCG 629 Query: 108 LCQEACPVDAIVEGPNFE 125 C + CP DA E Sbjct: 630 GCAQVCPFDAFEPMKEGE 647 >gi|54295706|ref|YP_128121.1| hypothetical protein lpl2794 [Legionella pneumophila str. Lens] gi|53755538|emb|CAH17037.1| hypothetical protein lpl2794 [Legionella pneumophila str. Lens] Length = 204 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 13/93 (13%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C CP AI S + + I +C CGLC + CPVD I Sbjct: 82 DECIGCTKCIKACPVDAIIGSSK----------LMHAIITHECTGCGLCVDPCPVDCIEM 131 Query: 121 GPNFEFATETRQ--ELYYDKERLLNNGDRWESE 151 A + Y+ +++ D E + Sbjct: 132 VS-LSAAGYDKDLARQRYNAKQMRQLRDEHEKQ 163 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 15/35 (42%), Positives = 17/35 (48%) Query: 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 D TR I +CI C C +ACPVDAI Sbjct: 65 KEAIDNTRPPSVAAIKEDECIGCTKCIKACPVDAI 99 >gi|54302327|ref|YP_132320.1| hypothetical protein PBPRB0647 [Photobacterium profundum SS9] gi|46915749|emb|CAG22520.1| hypothetical protein PBPRB0647 [Photobacterium profundum SS9] Length = 210 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 38/119 (31%), Gaps = 11/119 (9%) Query: 12 FLKEFVGAFFLC--------LRYFFKAKTTINYPFEKGST-SPRFRGEHALRRYPNGEER 62 FL + +L + + K + R AL ++ Sbjct: 11 FLYRIFKSLWLTAIAAVPYGIGRMLMPEKNQLASLNKSQLNHDKLRPPGALNDDIAFQKA 70 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 CI C LC +CP I ++ + + CI CG C E CP +A+ Sbjct: 71 CIGCSLCAEVCPPACIQFYHLDGANNANTPYIEPALRA--CILCGKCMEVCPTNALTVT 127 Score = 37.8 bits (86), Expect = 0.48, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 9/73 (12%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVR--YDIDMIKCIYCGLCQEACP--VDAI 118 CI C C +CP A+T+ + + G + R + + I CG C CP AI Sbjct: 109 CILCGKCMEVCPTNALTVTETRKVNMGRAQIERLACYPWVDRGI-CGACVSICPLGETAI 167 Query: 119 VEGPNFEFATETR 131 FEFA R Sbjct: 168 S----FEFANMYR 176 >gi|150389275|ref|YP_001319324.1| cobyrinic acid a,c-diamide synthase [Alkaliphilus metalliredigens QYMF] gi|149949137|gb|ABR47665.1| Cobyrinic acid a,c-diamide synthase [Alkaliphilus metalliredigens QYMF] Length = 286 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 34/91 (37%), Gaps = 18/91 (19%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 + + + C+ C LC C AI + G Y +D C CG+C Sbjct: 56 YFGMPKAEINSQICVQCDLCRENCRFDAINFDDG------------YHVDPFVCEGCGVC 103 Query: 110 QEACPVDAIVEGPNFEFATETRQELYYDKER 140 +E CPV A+ P E +L KE Sbjct: 104 EELCPVGAVSLKP------EKAGDLMLYKED 128 Score = 33.9 bits (76), Expect = 7.5, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 18/46 (39%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 +S + +I+ C+ C LC+E C DAI + Sbjct: 45 MHQSAKAIESDYFGMPKAEINSQICVQCDLCRENCRFDAINFDDGY 90 >gi|121726918|ref|ZP_01680119.1| iron-sulfur cluster-binding protein [Vibrio cholerae V52] gi|147673441|ref|YP_001217069.1| iron-sulfur cluster-binding protein [Vibrio cholerae O395] gi|262169548|ref|ZP_06037239.1| iron-sulfur cluster-binding protein [Vibrio cholerae RC27] gi|121630680|gb|EAX63067.1| iron-sulfur cluster-binding protein [Vibrio cholerae V52] gi|146315324|gb|ABQ19863.1| iron-sulfur cluster-binding protein [Vibrio cholerae O395] gi|227013430|gb|ACP09640.1| iron-sulfur cluster-binding protein [Vibrio cholerae O395] gi|262021782|gb|EEY40492.1| iron-sulfur cluster-binding protein [Vibrio cholerae RC27] Length = 553 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 9/75 (12%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C A+CP +A+ C+ CGLC +ACP A+ Sbjct: 418 SDCTLCMSCVAVCPTRALHPAGDSPA---------LRFIEQDCVQCGLCVKACPEQALSA 468 Query: 121 GPNFEFATETRQELY 135 P + RQ + Sbjct: 469 TPQLNWNKAARQGVV 483 Score = 41.6 bits (96), Expect = 0.036, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 14/81 (17%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 C+ C CPA A++ E + R I+ C G C ACP +AI + Sbjct: 186 CERCVDACPAGALSSEGSEQTGH------RIQINPYLCQGVGTCATACPTEAIH----YA 235 Query: 126 FA-TETRQELYYDKERLLNNG 145 Q+ ERLL N Sbjct: 236 LPNPTDTQKFI---ERLLANY 253 Score = 33.9 bits (76), Expect = 7.9, Method: Composition-based stats. Identities = 6/23 (26%), Positives = 8/23 (34%) Query: 97 DIDMIKCIYCGLCQEACPVDAIV 119 + C C C CP A+ Sbjct: 414 ECQASDCTLCMSCVAVCPTRALH 436 >gi|332343347|gb|AEE56681.1| electron transport complex RnfC [Escherichia coli UMNK88] Length = 708 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|332097845|gb|EGJ02818.1| electron transport complex protein rnfC [Shigella dysenteriae 155-74] Length = 708 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|332096012|gb|EGJ01017.1| electron transport complex protein rnfC [Shigella boydii 3594-74] Length = 716 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 347 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 404 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 405 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 453 >gi|332091211|gb|EGI96300.1| electron transport complex protein rnfC [Shigella boydii 5216-82] Length = 740 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|331677494|ref|ZP_08378169.1| electron transport complex protein RnfC [Escherichia coli H591] gi|331073954|gb|EGI45274.1| electron transport complex protein RnfC [Escherichia coli H591] Length = 544 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 294 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 351 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 352 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 400 >gi|330911436|gb|EGH39946.1| electron transport complex protein RnfC [Escherichia coli AA86] Length = 709 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|330445943|ref|ZP_08309595.1| 4Fe-4S binding domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490134|dbj|GAA04092.1| 4Fe-4S binding domain protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 551 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 9/76 (11%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + C C C A+CP +A+ C+ CG+C++ACP Sbjct: 414 CETKDCTLCMSCVAVCPTRALHAIGDRPGLL---------FIEEDCVQCGMCEKACPEKV 464 Query: 118 IVEGPNFEFATETRQE 133 I P F + + R+E Sbjct: 465 ISLEPRFNWDWQARKE 480 Score = 34.3 bits (77), Expect = 6.0, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 22/49 (44%), Gaps = 2/49 (4%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTV--RYDIDMIKCIYCG 107 E C+ C +CE CP + I++E R+ ++ CI CG Sbjct: 448 EDCVQCGMCEKACPEKVISLEPRFNWDWQARKEAKLVHEEPAACCISCG 496 Score = 33.9 bits (76), Expect = 7.8, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 11/53 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C CPA A++ + ID C G C ACP +AI Sbjct: 190 CDRCLEACPAGALSSDGVEIA-----------IDPYLCQGVGTCATACPTEAI 231 >gi|324119385|gb|EGC13272.1| electron transporter [Escherichia coli E1167] Length = 655 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|324006984|gb|EGB76203.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 57-2] Length = 808 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|323978231|gb|EGB73317.1| electron transporter [Escherichia coli TW10509] Length = 740 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|323973845|gb|EGB69018.1| electron transporter [Escherichia coli TA007] Length = 623 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|323962199|gb|EGB57793.1| electron transporter [Escherichia coli H489] Length = 659 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|323937424|gb|EGB33702.1| electron transporter [Escherichia coli E1520] Length = 631 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|323187054|gb|EFZ72370.1| electron transport complex protein rnfC [Escherichia coli RN587/1] Length = 773 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|323186099|gb|EFZ71455.1| electron transport complex protein rnfC [Escherichia coli 1357] Length = 708 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|323169935|gb|EFZ55591.1| electron transport complex protein rnfC [Escherichia coli LT-68] Length = 684 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 347 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 404 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 405 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 453 >gi|323169187|gb|EFZ54863.1| electron transport complex protein rnfC [Shigella sonnei 53G] Length = 708 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|320195473|gb|EFW70098.1| Electron transport complex protein RnfC [Escherichia coli WV_060327] Length = 740 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|320181352|gb|EFW56271.1| Electron transport complex protein RnfC [Shigella boydii ATCC 9905] Length = 708 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|318041122|ref|ZP_07973078.1| bidirectional hydrogenase complex protein HoxU [Synechococcus sp. CB0101] Length = 238 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 4/73 (5%) Query: 55 RYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDIDMI--KCIYCGLCQ 110 +Y RCI C C +C A + G R + + C +CG C Sbjct: 140 QYGLDHNRCILCTRCVRVCDEVEGAHVWDVGWRGEHCQIISGLGEPWGDVNACTHCGKCV 199 Query: 111 EACPVDAIVEGPN 123 E CP A+ + Sbjct: 200 EVCPTGALFHKTD 212 >gi|315060936|gb|ADT75263.1| electron transport complex protein RnfC [Escherichia coli W] gi|323378493|gb|ADX50761.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli KO11] Length = 740 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|309793394|ref|ZP_07687821.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 145-7] gi|308122981|gb|EFO60243.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 145-7] Length = 772 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|306813407|ref|ZP_07447597.1| electron transport complex protein RnfC [Escherichia coli NC101] gi|305853152|gb|EFM53592.1| electron transport complex protein RnfC [Escherichia coli NC101] Length = 740 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|302343661|ref|YP_003808190.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfarculus baarsii DSM 2075] gi|301640274|gb|ADK85596.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfarculus baarsii DSM 2075] Length = 332 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 8/62 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C C LC C AI+ G +D KC+ CGLC CP +AI Sbjct: 266 DPEACTGCGLCHERCYFGAISWSEGEGSAS--------QVDAEKCLGCGLCMVTCPAEAI 317 Query: 119 VE 120 Sbjct: 318 DL 319 Score = 35.1 bits (79), Expect = 3.1, Method: Composition-based stats. Identities = 12/28 (42%), Positives = 13/28 (46%) Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEG 121 R +ID C CGLC E C AI Sbjct: 261 FRAEIDPEACTGCGLCHERCYFGAISWS 288 >gi|300819310|ref|ZP_07099509.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 107-1] gi|300528081|gb|EFK49143.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 107-1] Length = 676 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|300821500|ref|ZP_07101647.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 119-7] gi|300526003|gb|EFK47072.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 119-7] Length = 640 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|293446004|ref|ZP_06662426.1| electron transport complex protein RnfC [Escherichia coli B088] gi|291322834|gb|EFE62262.1| electron transport complex protein RnfC [Escherichia coli B088] Length = 662 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|291282761|ref|YP_003499579.1| Electron transport complex protein RnfC [Escherichia coli O55:H7 str. CB9615] gi|290762634|gb|ADD56595.1| Electron transport complex protein RnfC [Escherichia coli O55:H7 str. CB9615] gi|320647300|gb|EFX16108.1| electron transport complex protein RnfC [Escherichia coli O157:H- str. 493-89] gi|320652594|gb|EFX20863.1| electron transport complex protein RnfC [Escherichia coli O157:H- str. H 2687] gi|320668653|gb|EFX35458.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. LSU-61] Length = 772 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|282162803|ref|YP_003355188.1| putative ferredoxin [Methanocella paludicola SANAE] gi|282155117|dbj|BAI60205.1| putative ferredoxin [Methanocella paludicola SANAE] Length = 129 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 10/65 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 EE C+ C C A+CP AI E R +D C+ CG C ACPV I Sbjct: 75 DEENCVHCGACVAVCPVGAIAFE----------YDWRVRMDEKACVQCGNCVTACPVKVI 124 Query: 119 VEGPN 123 N Sbjct: 125 RLSDN 129 Score = 35.5 bits (80), Expect = 2.4, Method: Composition-based stats. Identities = 9/25 (36%), Positives = 13/25 (52%) Query: 100 MIKCIYCGLCQEACPVDAIVEGPNF 124 C++CG C CPV AI ++ Sbjct: 76 EENCVHCGACVAVCPVGAIAFEYDW 100 >gi|253773413|ref|YP_003036244.1| electron transport complex protein RnfC [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253324457|gb|ACT29059.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] Length = 708 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|238923284|ref|YP_002936799.1| sulfite reductase, beta subunit [Eubacterium rectale ATCC 33656] gi|238874958|gb|ACR74665.1| sulfite reductase, beta subunit [Eubacterium rectale ATCC 33656] Length = 289 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 11/65 (16%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + CI C +C C A+++E G R ID KC C C ++CP DA Sbjct: 164 HDDCIQCGVCVKACREGALSMEDG-----------RIVIDRDKCNNCARCVKSCPTDAWK 212 Query: 120 EGPNF 124 P + Sbjct: 213 GTPGY 217 Score = 35.1 bits (79), Expect = 3.6, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 15/45 (33%) Query: 78 ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 G + + + CI CG+C +AC A+ Sbjct: 142 NNCLKAEENDVGIKGGMTVECSHDDCIQCGVCVKACREGALSMED 186 >gi|222033388|emb|CAP76129.1| electron transport complex protein rnfC [Escherichia coli LF82] gi|312946229|gb|ADR27056.1| electron transport complex protein RnfC [Escherichia coli O83:H1 str. NRG 857C] Length = 775 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|218705130|ref|YP_002412649.1| electron transport complex protein RnfC [Escherichia coli UMN026] gi|300901564|ref|ZP_07119633.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 198-1] gi|226735442|sp|B7NB83|RNFC_ECOLU RecName: Full=Electron transport complex protein rnfC gi|218432227|emb|CAR13117.1| putative 4Fe-4S ferredoxin-type protein fused with unknown protein [Escherichia coli UMN026] gi|300355031|gb|EFJ70901.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 198-1] Length = 740 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|218699803|ref|YP_002407432.1| electron transport complex protein RnfC [Escherichia coli IAI39] gi|226735439|sp|B7NU04|RNFC_ECO7I RecName: Full=Electron transport complex protein rnfC gi|218369789|emb|CAR17560.1| putative 4Fe-4S ferredoxin-type protein fused with unknown protein [Escherichia coli IAI39] Length = 740 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|218554197|ref|YP_002387110.1| electron transport complex protein RnfC [Escherichia coli IAI1] gi|218695192|ref|YP_002402859.1| electron transport complex protein RnfC [Escherichia coli 55989] gi|226735440|sp|B7M0I6|RNFC_ECO8A RecName: Full=Electron transport complex protein rnfC gi|254807930|sp|B7L5I2|RNFC_ECO55 RecName: Full=Electron transport complex protein rnfC gi|218351924|emb|CAU97649.1| putative 4Fe-4S ferredoxin-type protein fused with unknown protein [Escherichia coli 55989] gi|218360965|emb|CAQ98538.1| putative 4Fe-4S ferredoxin-type protein fused with unknown protein [Escherichia coli IAI1] gi|323152867|gb|EFZ39137.1| electron transport complex protein rnfC [Escherichia coli EPECa14] Length = 708 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|215486806|ref|YP_002329237.1| electron transport complex protein RnfC [Escherichia coli O127:H6 str. E2348/69] gi|312966607|ref|ZP_07780827.1| electron transport complex protein rnfC [Escherichia coli 2362-75] gi|254807929|sp|B7URX0|RNFC_ECO27 RecName: Full=Electron transport complex protein rnfC gi|215264878|emb|CAS09264.1| fused predicted 4Fe-4S ferredoxin-type protein/conserved protein [Escherichia coli O127:H6 str. E2348/69] gi|312288717|gb|EFR16617.1| electron transport complex protein rnfC [Escherichia coli 2362-75] Length = 741 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|212637025|ref|YP_002313550.1| formate dehydrogenase subunit alpha [Shewanella piezotolerans WP3] gi|212558509|gb|ACJ30963.1| Formate dehydrogenase, alpha subunit [Shewanella piezotolerans WP3] Length = 1392 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 14/79 (17%) Query: 59 GEERCIACKLCEAIC--------------PAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 RCI+C C C QA+ + R ++ C+ Sbjct: 642 DANRCISCGACVETCKGASGHNAICFEKDHYQALPSTDNTAKRNAPRVGFSASMNDSDCV 701 Query: 105 YCGLCQEACPVDAIVEGPN 123 CG C + CP A+V+ + Sbjct: 702 QCGNCVQVCPTGALVDSRD 720 >gi|209918942|ref|YP_002293026.1| electron transport complex protein RnfC [Escherichia coli SE11] gi|226735443|sp|B6IB67|RNFC_ECOSE RecName: Full=Electron transport complex protein rnfC gi|209912201|dbj|BAG77275.1| putative transport protein [Escherichia coli SE11] Length = 740 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|170768759|ref|ZP_02903212.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia albertii TW07627] gi|170122307|gb|EDS91238.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia albertii TW07627] Length = 740 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|168750557|ref|ZP_02775579.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4113] gi|168757455|ref|ZP_02782462.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4401] gi|168771171|ref|ZP_02796178.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4486] gi|168775859|ref|ZP_02800866.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4196] gi|168783452|ref|ZP_02808459.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4076] gi|168789466|ref|ZP_02814473.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC869] gi|168800889|ref|ZP_02825896.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC508] gi|195939018|ref|ZP_03084400.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4024] gi|208810265|ref|ZP_03252141.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4206] gi|208821817|ref|ZP_03262137.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4042] gi|209399637|ref|YP_002270699.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4115] gi|254793246|ref|YP_003078083.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. TW14359] gi|261227926|ref|ZP_05942207.1| inner membrane iron-sulfur protein in SoxR-reducing complex [Escherichia coli O157:H7 str. FRIK2000] gi|226735438|sp|B5Z463|RNFC_ECO5E RecName: Full=Electron transport complex protein rnfC gi|187768715|gb|EDU32559.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4196] gi|188015238|gb|EDU53360.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4113] gi|188999240|gb|EDU68226.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4076] gi|189355522|gb|EDU73941.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4401] gi|189359999|gb|EDU78418.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4486] gi|189370921|gb|EDU89337.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC869] gi|189376869|gb|EDU95285.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC508] gi|208724781|gb|EDZ74488.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4206] gi|208741940|gb|EDZ89622.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4042] gi|209161037|gb|ACI38470.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4115] gi|254592646|gb|ACT72007.1| inner membrane iron-sulfur protein in SoxR-reducing complex [Escherichia coli O157:H7 str. TW14359] gi|326343546|gb|EGD67308.1| Electron transport complex protein RnfC [Escherichia coli O157:H7 str. 1125] Length = 772 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|208816704|ref|ZP_03257824.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4045] gi|208731047|gb|EDZ79736.1| electron transport complex protein RnfC [Escherichia coli O157:H7 str. EC4045] Length = 708 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|145591908|ref|YP_001153910.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Pyrobaculum arsenaticum DSM 13514] gi|145283676|gb|ABP51258.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Pyrobaculum arsenaticum DSM 13514] Length = 82 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 10/63 (15%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++CI C LC C P R + ID C CG+C + CPV AI Sbjct: 28 DKCIDCGLCWLYC----------PESVIDWERGHKVTIDYTYCKGCGICADVCPVKAINM 77 Query: 121 GPN 123 P Sbjct: 78 IPE 80 >gi|170020019|ref|YP_001724973.1| electron transport complex protein RnfC [Escherichia coli ATCC 8739] gi|312969650|ref|ZP_07783833.1| electron transport complex protein rnfC [Escherichia coli 1827-70] gi|189043391|sp|B1IQC5|RNFC_ECOLC RecName: Full=Electron transport complex protein rnfC gi|169754947|gb|ACA77646.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli ATCC 8739] gi|310337935|gb|EFQ03024.1| electron transport complex protein rnfC [Escherichia coli 1827-70] Length = 740 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|110680292|ref|YP_683299.1| dihydropyrimidine dehydrogenase [Roseobacter denitrificans OCh 114] gi|109456408|gb|ABG32613.1| dihydroorotate dehydrogenase family protein, putative [Roseobacter denitrificans OCh 114] Length = 434 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 35/95 (36%), Gaps = 8/95 (8%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + + CI+C C A C E + + +C+ Sbjct: 330 QYLNLNYVAKAQINQADCISCGRCYAAC-------EDTSHQAIAMSEDRVFSVIDEECVA 382 Query: 106 CGLCQEACPV-DAIVEGPNFEFATETRQELYYDKE 139 C LC E CPV + I P + + R +K+ Sbjct: 383 CNLCVEVCPVENCITMVPMEQGKVDPRTGKVVEKD 417 >gi|91210842|ref|YP_540828.1| electron transport complex protein RnfC [Escherichia coli UTI89] gi|218558500|ref|YP_002391413.1| electron transport complex protein RnfC [Escherichia coli S88] gi|218689576|ref|YP_002397788.1| electron transport complex protein RnfC [Escherichia coli ED1a] gi|123387945|sp|Q1RBG7|RNFC_ECOUT RecName: Full=Electron transport complex protein rnfC gi|226735437|sp|B7M9Y3|RNFC_ECO45 RecName: Full=Electron transport complex protein rnfC gi|254807931|sp|B7MVA7|RNFC_ECO81 RecName: Full=Electron transport complex protein rnfC gi|91072416|gb|ABE07297.1| electron transport complex protein RnfC [Escherichia coli UTI89] gi|218365269|emb|CAR02990.1| putative 4Fe-4S ferredoxin-type protein fused with unknown protein [Escherichia coli S88] gi|218427140|emb|CAR08023.2| putative 4Fe-4S ferredoxin-type protein fused with unknown protein [Escherichia coli ED1a] gi|294490842|gb|ADE89598.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli IHE3034] gi|307626885|gb|ADN71189.1| electron transport complex protein RnfC [Escherichia coli UM146] Length = 708 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|82777103|ref|YP_403452.1| electron transport complex protein RnfC [Shigella dysenteriae Sd197] gi|309788404|ref|ZP_07683008.1| electron transport complex protein rnfC [Shigella dysenteriae 1617] gi|123742129|sp|Q32FE4|RNFC_SHIDS RecName: Full=Electron transport complex protein rnfC gi|81241251|gb|ABB61961.1| putative membrane protein [Shigella dysenteriae Sd197] gi|308923786|gb|EFP69289.1| electron transport complex protein rnfC [Shigella dysenteriae 1617] Length = 772 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|82544003|ref|YP_407950.1| electron transport complex protein RnfC [Shigella boydii Sb227] gi|123741996|sp|Q320Y6|RNFC_SHIBS RecName: Full=Electron transport complex protein rnfC gi|81245414|gb|ABB66122.1| putative membrane protein [Shigella boydii Sb227] gi|320186301|gb|EFW61037.1| Electron transport complex protein RnfC [Shigella flexneri CDC 796-83] Length = 740 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|74312044|ref|YP_310463.1| electron transport complex protein RnfC [Shigella sonnei Ss046] gi|123759605|sp|Q3Z1Y4|RNFC_SHISS RecName: Full=Electron transport complex protein rnfC gi|73855521|gb|AAZ88228.1| putative membrane protein [Shigella sonnei Ss046] Length = 740 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|26247876|ref|NP_753916.1| electron transport complex protein RnfC [Escherichia coli CFT073] gi|81748475|sp|Q8FH95|RNFC_ECOL6 RecName: Full=Electron transport complex protein rnfC gi|26108279|gb|AAN80481.1|AE016761_56 Electron transport complex protein rnfC [Escherichia coli CFT073] gi|307553652|gb|ADN46427.1| electron transport complex protein RnfC [Escherichia coli ABU 83972] Length = 742 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|53712822|ref|YP_098814.1| putative dehydrogenase [Bacteroides fragilis YCH46] gi|52215687|dbj|BAD48280.1| putative dehydrogenase [Bacteroides fragilis YCH46] Length = 607 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 8/74 (10%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + C C C +C AIT ++ +ID KC CGLC++ C Sbjct: 1 MINITDKSECCGCNACGDVCAHNAITFKTDIEGFWYP------EIDKDKCTDCGLCEKVC 54 Query: 114 PVDAIVE--GPNFE 125 P+ I E +FE Sbjct: 55 PIVNIEELKKNDFE 68 >gi|16129587|ref|NP_416146.1| electron transport complex protein required for the reduction of SoxR; predicted membrane-associated NADH oxidoreductase [Escherichia coli str. K-12 substr. MG1655] gi|89108471|ref|AP_002251.1| fused predicted 4Fe-4S ferredoxin-type protein [Escherichia coli str. K-12 substr. W3110] gi|170081293|ref|YP_001730613.1| inner membrane iron-sulfur protein in SoxR-reducing complex [Escherichia coli str. K-12 substr. DH10B] gi|238900845|ref|YP_002926641.1| fused putative 4Fe-4S ferredoxin-type protein/hypothetical protein [Escherichia coli BW2952] gi|17368316|sp|P77611|RNFC_ECOLI RecName: Full=Electron transport complex protein rnfC gi|226735441|sp|B1XFU1|RNFC_ECODH RecName: Full=Electron transport complex protein rnfC gi|259494049|sp|C4ZY92|RNFC_ECOBW RecName: Full=Electron transport complex protein rnfC gi|1742688|dbj|BAA15384.1| fused predicted 4Fe-4S ferredoxin-type protein [Escherichia coli str. K12 substr. W3110] gi|1787916|gb|AAC74701.1| electron transport complex protein required for the reduction of SoxR; predicted membrane-associated NADH oxidoreductase [Escherichia coli str. K-12 substr. MG1655] gi|169889128|gb|ACB02835.1| inner membrane iron-sulfur protein in SoxR-reducing complex [Escherichia coli str. K-12 substr. DH10B] gi|238861218|gb|ACR63216.1| fused predicted 4Fe-4S ferredoxin-type protein/conserved protein [Escherichia coli BW2952] gi|260449247|gb|ACX39669.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli DH1] gi|309701855|emb|CBJ01167.1| electron transport complex protein [Escherichia coli ETEC H10407] gi|315136270|dbj|BAJ43429.1| electron transport complex protein RnfC [Escherichia coli DH1] Length = 740 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|194436648|ref|ZP_03068749.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli 101-1] gi|254161691|ref|YP_003044799.1| electron transport complex protein RnfC [Escherichia coli B str. REL606] gi|194424680|gb|EDX40666.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli 101-1] gi|253973592|gb|ACT39263.1| electron transport complex protein RnfC [Escherichia coli B str. REL606] gi|253977787|gb|ACT43457.1| electron transport complex protein RnfC [Escherichia coli BL21(DE3)] gi|313848649|emb|CAQ32106.2| member of SoxR-reducing complex [Escherichia coli BL21(DE3)] Length = 740 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|194431936|ref|ZP_03064226.1| electron transport complex, RnfABCDGE type, C subunit [Shigella dysenteriae 1012] gi|194419844|gb|EDX35923.1| electron transport complex, RnfABCDGE type, C subunit [Shigella dysenteriae 1012] Length = 740 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|191165932|ref|ZP_03027769.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli B7A] gi|193064894|ref|ZP_03045970.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli E22] gi|260843935|ref|YP_003221713.1| fused putative 4Fe-4S ferredoxin-type protein/hypothetical protein [Escherichia coli O103:H2 str. 12009] gi|260855454|ref|YP_003229345.1| fused putative 4Fe-4S ferredoxin-type protein/conserved protein [Escherichia coli O26:H11 str. 11368] gi|260868121|ref|YP_003234523.1| fused putative 4Fe-4S ferredoxin-type protein/hypothetical protein [Escherichia coli O111:H- str. 11128] gi|301303141|ref|ZP_07209267.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 124-1] gi|190904063|gb|EDV63775.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli B7A] gi|192927381|gb|EDV81999.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli E22] gi|257754103|dbj|BAI25605.1| fused predicted 4Fe-4S ferredoxin-type protein/conserved protein [Escherichia coli O26:H11 str. 11368] gi|257759082|dbj|BAI30579.1| fused predicted 4Fe-4S ferredoxin-type protein/conserved protein [Escherichia coli O103:H2 str. 12009] gi|257764477|dbj|BAI35972.1| fused predicted 4Fe-4S ferredoxin-type protein/conserved protein [Escherichia coli O111:H- str. 11128] gi|300841550|gb|EFK69310.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 124-1] gi|315257571|gb|EFU37539.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 85-1] gi|320197812|gb|EFW72420.1| Electron transport complex protein RnfC [Escherichia coli EC4100B] gi|323163522|gb|EFZ49348.1| electron transport complex protein rnfC [Escherichia coli E128010] gi|323180943|gb|EFZ66481.1| electron transport complex protein rnfC [Escherichia coli 1180] Length = 740 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|188495694|ref|ZP_03002964.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli 53638] gi|188490893|gb|EDU65996.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli 53638] Length = 740 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|193070267|ref|ZP_03051211.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli E110019] gi|192956448|gb|EDV86907.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli E110019] Length = 740 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|110641752|ref|YP_669482.1| electron transport complex protein RnfC [Escherichia coli 536] gi|191173436|ref|ZP_03034964.1| electron transport complex protein RnfC [Escherichia coli F11] gi|123049190|sp|Q0THJ8|RNFC_ECOL5 RecName: Full=Electron transport complex protein rnfC gi|110343344|gb|ABG69581.1| electron transport complex protein RnfC [Escherichia coli 536] gi|190906278|gb|EDV65889.1| electron transport complex protein RnfC [Escherichia coli F11] Length = 774 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|157161091|ref|YP_001458409.1| electron transport complex protein RnfC [Escherichia coli HS] gi|166991047|sp|A8A0H2|RNFC_ECOHS RecName: Full=Electron transport complex protein rnfC gi|157066771|gb|ABV06026.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli HS] Length = 740 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|157157957|ref|YP_001462918.1| electron transport complex protein RnfC [Escherichia coli E24377A] gi|166991046|sp|A7ZM89|RNFC_ECO24 RecName: Full=Electron transport complex protein rnfC gi|157079987|gb|ABV19695.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli E24377A] Length = 740 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|187732180|ref|YP_001880384.1| electron transport complex protein RnfC [Shigella boydii CDC 3083-94] gi|226735456|sp|B2U2C8|RNFC_SHIB3 RecName: Full=Electron transport complex protein rnfC gi|187429172|gb|ACD08446.1| electron transport complex, RnfABCDGE type, C subunit [Shigella boydii CDC 3083-94] Length = 708 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|332702968|ref|ZP_08423056.1| Cobyrinic acid ac-diamide synthase [Desulfovibrio africanus str. Walvis Bay] gi|332553117|gb|EGJ50161.1| Cobyrinic acid ac-diamide synthase [Desulfovibrio africanus str. Walvis Bay] Length = 293 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 14/64 (21%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C C LC++ C +AIT+E I C CGLC CPV AI Sbjct: 66 DECTQCLLCQSRCRFEAITMEP--------------RILAEHCEGCGLCAFICPVGAIKM 111 Query: 121 GPNF 124 P Sbjct: 112 EPRH 115 >gi|310659595|ref|YP_003937316.1| molybdopterin oxidoreductase [Clostridium sticklandii DSM 519] gi|308826373|emb|CBH22411.1| Molybdopterin oxidoreductase [Clostridium sticklandii] Length = 1195 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 30/97 (30%), Gaps = 10/97 (10%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGEER-------CIACKLCEAIC---PAQAITIESG 83 I + E RF GE R + CI C C IC Sbjct: 587 IRHSQEYDVKPERFAGEMHKRLDEDNHPFIKRDPNKCILCGQCVRICDEVMDNTALGLVS 646 Query: 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + + ++ CI CG C CP A++E Sbjct: 647 RGFDTIVKPALEKNLRETDCISCGQCISVCPTGALME 683 >gi|307611754|emb|CBX01462.1| hypothetical protein LPW_31501 [Legionella pneumophila 130b] Length = 204 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 13/93 (13%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C CP AI S + + I +C CGLC + CPVD I Sbjct: 82 DECIGCTKCIKACPVDAIIGSSK----------LMHAIITHECTGCGLCVDPCPVDCIEM 131 Query: 121 GPNFEFATETRQ--ELYYDKERLLNNGDRWESE 151 A + Y+ +++ D E + Sbjct: 132 VS-LSAAGYDKDLARQRYNAKQMRQLRDEHEKQ 163 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 15/35 (42%), Positives = 17/35 (48%) Query: 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 D TR I +CI C C +ACPVDAI Sbjct: 65 KEAIDNTRPPSVAAIKEDECIGCTKCIKACPVDAI 99 >gi|293376713|ref|ZP_06622936.1| protein HymB [Turicibacter sanguinis PC909] gi|325845200|ref|ZP_08168508.1| protein HymB [Turicibacter sp. HGF1] gi|292644670|gb|EFF62757.1| protein HymB [Turicibacter sanguinis PC909] gi|325488796|gb|EGC91197.1| protein HymB [Turicibacter sp. HGF1] Length = 606 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 2/54 (3%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 ++CI C +C CPA I RR R+ I+ + CI CG C CP Sbjct: 546 DKCIGCGMCAKACPASCIKPVGEVVNEKTGRR--RHVINKVDCIKCGACMATCP 597 Score = 41.6 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 20/59 (33%) Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 RC G + KCI CG+C +ACP I R+ +K Sbjct: 525 HVVDKRCPSGVCTKLLEYFITDKCIGCGMCAKACPASCIKPVGEVVNEKTGRRRHVINK 583 >gi|188587898|ref|YP_001920057.1| sulfite reductase, subunit C [Clostridium botulinum E3 str. Alaska E43] gi|188498179|gb|ACD51315.1| sulfite reductase, subunit C [Clostridium botulinum E3 str. Alaska E43] Length = 345 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 23/74 (31%), Gaps = 8/74 (10%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G + + +RC+ C C C + G + KCI CG Sbjct: 165 GIMGISKIDFDYDRCVGCGACVKECKQHVTSALYGKDGKAAK--------QIDKCIGCGA 216 Query: 109 CQEACPVDAIVEGP 122 C + CP A Sbjct: 217 CVKVCPTMAWSRSN 230 >gi|54309723|ref|YP_130743.1| electron transport complex protein RnfC [Photobacterium profundum SS9] gi|46914161|emb|CAG20941.1| putative NADH:ubiquinone oxidoreductase, subunit RnfC [Photobacterium profundum SS9] Length = 761 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 30/155 (19%), Positives = 48/155 (30%), Gaps = 23/155 (14%) Query: 16 FVGA--FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 +G L + N P K + L + + CI C C C Sbjct: 338 IIGGSLMGFTLPHA-------NVPITKITNCILAPKRKELPLHTHEMA-CIRCTACAEAC 389 Query: 74 PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF-----EFAT 128 PA + + + ++ CI CG C CP I + E Sbjct: 390 PAS-LLPQQLQWYAKDQDYAKCEEYNLFDCIECGACAYVCP-SEIPLVQYYRQAKSEITA 447 Query: 129 ETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + E ++ RL R+E++ R + D R Sbjct: 448 RKQDEANAERARL-----RFEAKNAR-MERDKAER 476 >gi|331006635|ref|ZP_08329919.1| Electron transport complex protein RnfB [gamma proteobacterium IMCC1989] gi|330419550|gb|EGG93932.1| Electron transport complex protein RnfB [gamma proteobacterium IMCC1989] Length = 216 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 10/72 (13%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 E+ CI C C CP AI + + + + +C C LC Sbjct: 110 EVKTVAYIREDECIGCTKCIQACPVDAILGAAKQ----------MHTVIVDECTGCDLCV 159 Query: 111 EACPVDAIVEGP 122 E CPVD I P Sbjct: 160 EPCPVDCIDMLP 171 Score = 38.2 bits (87), Expect = 0.37, Method: Composition-based stats. Identities = 12/36 (33%), Positives = 15/36 (41%) Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + I +CI C C +ACPVDAI Sbjct: 102 DEEHGEEAEVKTVAYIREDECIGCTKCIQACPVDAI 137 >gi|328542363|ref|YP_004302472.1| dihydroorotate dehydrogenase family protein [polymorphum gilvum SL003B-26A1] gi|326412110|gb|ADZ69173.1| Dihydroorotate dehydrogenase family protein [Polymorphum gilvum SL003B-26A1] Length = 434 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 6/78 (7%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 + + + + ++ CI C C A S R+++ +C+ Sbjct: 327 QHLNLNYIAKAKIDQDLCIKCGRCHI-----ACEDTSHQAITSMVDGVRRFEVIDAECVG 381 Query: 106 CGLCQEACPV-DAIVEGP 122 C LC CPV + I P Sbjct: 382 CNLCVNVCPVENCITMEP 399 >gi|325660925|ref|ZP_08149552.1| hypothetical protein HMPREF0490_00284 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472432|gb|EGC75643.1| hypothetical protein HMPREF0490_00284 [Lachnospiraceae bacterium 4_1_37FAA] Length = 594 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 11/78 (14%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G + ++ C C C C +AI++ I CI+CG Sbjct: 9 GVNGMKVIDFQNASCKHCYKCVRNCSVKAISVRHEQAH-----------IMNDHCIHCGK 57 Query: 109 CQEACPVDAIVEGPNFEF 126 C E CP +A + E Sbjct: 58 CLEVCPQNAKRFASDLEL 75 >gi|303237613|ref|ZP_07324173.1| pyruvate synthase [Prevotella disiens FB035-09AN] gi|302482065|gb|EFL45100.1| pyruvate synthase [Prevotella disiens FB035-09AN] Length = 1186 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 24/82 (29%), Gaps = 16/82 (19%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIE---------------SGPRCHDGTRR 92 RG A E CI C C +CP I Sbjct: 679 RGVEAFHPEWT-SENCIQCNKCAYVCPHACIRPFVLDDEEIKGFNDKTLEMKVPKPMAGM 737 Query: 93 TVRYDIDMIKCIYCGLCQEACP 114 R + ++ C+ CG C + CP Sbjct: 738 NFRIQVSILDCVGCGNCADVCP 759 >gi|300122846|emb|CBK23853.2| Pyruvate:Ferredoxin (flavodoxin) Oxidoreductase (PFO) [Blastocystis hominis] Length = 1220 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 22/170 (12%), Positives = 46/170 (27%), Gaps = 42/170 (24%) Query: 24 LRYFF---------KAKTTINYP--FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + F + + P TS + A+ ++ C C C + Sbjct: 672 FKNLFYPTTLLDGDRFPVSAFTPGGIHPTDTSKYEKRGFAVSVPVWNKDTCTQCNQCSVM 731 Query: 73 CPA--------QAITIESGPRCHDGTRR--------TVRYDIDMIKCIYCGLCQEACPVD 116 CP A + P R + C C +C CP Sbjct: 732 CPHAVIRPFLMDAEETKKAPASFVSLPAVGDELKGLNFRIQASPLDCTGCEVCVNVCPTQ 791 Query: 117 AIVEGP------------NFEFATETRQELYYDKERLLNNGDRWESEIVR 154 ++ P +F + +L ++ G +++ +++ Sbjct: 792 SLNMEPLGSVKDVEGKNWDFAMTLTNKGDLV---DKTTVKGSQFQPPLIQ 838 >gi|295094633|emb|CBK83724.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Coprococcus sp. ART55/1] Length = 286 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/95 (28%), Positives = 32/95 (33%), Gaps = 12/95 (12%) Query: 24 LRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG 83 L + FK T G E CI C +C C AIT+ G Sbjct: 127 LSHKFKFGVTGCQ-NNCLKAEENDVGIKGAMVVEWDEPSCIMCGVCVKACREGAITMADG 185 Query: 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +D KC YCG C +ACP DA Sbjct: 186 KII-----------LDTDKCNYCGRCAKACPTDAW 209 Score = 34.3 bits (77), Expect = 5.7, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 16/48 (33%), Gaps = 3/48 (6%) Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C + E G D CI CG+C +AC AI Sbjct: 138 CQNNCLKAEENDVGIKGAMVVEW---DEPSCIMCGVCVKACREGAITM 182 >gi|293401574|ref|ZP_06645717.1| hypothetical protein gi|291305212|gb|EFE46458.1| [Fe] hydrogenase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 482 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 26/70 (37%), Gaps = 6/70 (8%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY------DIDMIKCIYCGL 108 ++C C C+ CP AI P + +ID KCI CG Sbjct: 127 HAFIDYDKCKECGACKNACPFNAIVETQRPCMKSCPVDAISMGESGLAEIDEEKCINCGA 186 Query: 109 CQEACPVDAI 118 CQ CP AI Sbjct: 187 CQAKCPFGAI 196 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 26/87 (29%), Gaps = 7/87 (8%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG-----TRRTV 94 K + + R + C C + + + Sbjct: 69 KPPVPVEHENKRQIVRVID--AACDGCSIHKIQVTDNCRKCMAKACLSACKFDAIHMGND 126 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEG 121 ID KC CG C+ ACP +AIVE Sbjct: 127 HAFIDYDKCKECGACKNACPFNAIVET 153 >gi|269102700|ref|ZP_06155397.1| iron-sulfur cluster-binding protein [Photobacterium damselae subsp. damselae CIP 102761] gi|268162598|gb|EEZ41094.1| iron-sulfur cluster-binding protein [Photobacterium damselae subsp. damselae CIP 102761] Length = 552 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 9/73 (12%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C C C A+CP +A+ CI CG+CQ+ACP + I Sbjct: 418 DDCTLCMGCVAVCPTRALHAIGDRPGLL---------FIEEDCIQCGMCQKACPENVITV 468 Query: 121 GPNFEFATETRQE 133 P F + + R+E Sbjct: 469 EPGFNWGWQARKE 481 Score = 35.5 bits (80), Expect = 2.5, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 10/53 (18%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C CPA AI+ + I+ C G C ACP +AI Sbjct: 191 CDRCLDACPAGAISANADQEIE----------INPYLCQGVGTCATACPTEAI 233 Score = 35.5 bits (80), Expect = 2.5, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTV--RYDIDMIKCIYCG 107 E CI C +C+ CP IT+E G R+ ++ CI CG Sbjct: 449 EDCIQCGMCQKACPENVITVEPGFNWGWQARKEAKLVHEEPAACCINCG 497 >gi|168182073|ref|ZP_02616737.1| [Fe] hydrogenase [Clostridium botulinum Bf] gi|182674775|gb|EDT86736.1| [Fe] hydrogenase [Clostridium botulinum Bf] Length = 497 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 7/69 (10%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIKCIYCGLC 109 + +C C LC+ +CP AI P R I+ CI CG C Sbjct: 135 YIDQNKCRECGLCKKVCPYNAIVEVMRPCKKVCPTGALEINPDDKRAMIEKENCINCGAC 194 Query: 110 QEACPVDAI 118 ACP AI Sbjct: 195 MAACPFGAI 203 >gi|163842566|ref|YP_001626970.1| dihydropyrimidine dehydrogenase [Brucella suis ATCC 23445] gi|163673289|gb|ABY37400.1| dihydroorotate dehydrogenase family protein [Brucella suis ATCC 23445] Length = 436 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 6/79 (7%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI C C A S +++ +C+ Sbjct: 330 QYLNLNYVTKARINQDLCIQCGRCHI-----ACEDTSHQAITAMVNGVRHFEVIDEECVG 384 Query: 106 CGLCQEACPV-DAIVEGPN 123 C LC CPV + I Sbjct: 385 CNLCVNVCPVENCITMEQI 403 >gi|320156506|ref|YP_004188885.1| ferredoxin-type protein NapG (periplasmic nitrate reductase) [Vibrio vulnificus MO6-24/O] gi|319931818|gb|ADV86682.1| ferredoxin-type protein NapG (periplasmic nitrate reductase) [Vibrio vulnificus MO6-24/O] Length = 288 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 23/73 (31%), Gaps = 8/73 (10%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 LR E C C C +C P + + CI CG C + Sbjct: 214 VLRISAENREACTKCMDCYNVC--------PEPEVLRQPLKEGDRRVMDQNCISCGRCID 265 Query: 112 ACPVDAIVEGPNF 124 CP + +V F Sbjct: 266 VCPENVLVFTHRF 278 >gi|300120212|emb|CBK19766.2| Pyruvate:Ferredoxin (flavodoxin) Oxidoreductase (PFO) [Blastocystis hominis] Length = 1220 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 22/170 (12%), Positives = 46/170 (27%), Gaps = 42/170 (24%) Query: 24 LRYFF---------KAKTTINYP--FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 + F + + P TS + A+ ++ C C C + Sbjct: 672 FKNLFYPTTLLDGDRFPVSAFTPGGIHPTDTSKYEKRGFAVSVPVWNKDTCTQCNQCSVM 731 Query: 73 CPA--------QAITIESGPRCHDGTRR--------TVRYDIDMIKCIYCGLCQEACPVD 116 CP A + P R + C C +C CP Sbjct: 732 CPHAVIRPFLMDAEETKKAPASFVSLPAVGDELKGLNFRIQASPLDCTGCEVCVNVCPTQ 791 Query: 117 AIVEGP------------NFEFATETRQELYYDKERLLNNGDRWESEIVR 154 ++ P +F + +L ++ G +++ +++ Sbjct: 792 SLNMEPLGSVKDVEGKNWDFAMTLTNKGDLV---DKTTVKGSQFQPPLIQ 838 >gi|288561161|ref|YP_003424647.1| methyl viologen-reducing hydrogenase beta subunit MvhB [Methanobrevibacter ruminantium M1] gi|288543871|gb|ADC47755.1| methyl viologen-reducing hydrogenase beta subunit MvhB [Methanobrevibacter ruminantium M1] Length = 410 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 29/60 (48%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E++CI C +C CP AI I + ++ + +D CI C C +ACP D I Sbjct: 170 DEDKCIQCGVCSQSCPWNAIFIAGNAKPAKRSKVMKSFTLDADACIGCNSCVDACPGDFI 229 Score = 41.6 bits (96), Expect = 0.036, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 1/61 (1%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID-MIKCIYCGLCQEACPVDAI 118 C+ C C +CP A+ ++ + DG I KC CG C +ACP D + Sbjct: 319 FIMCVRCGACANVCPNDALQLDYVDKEIDGETVMRDRIIFNPSKCDECGECIDACPYDML 378 Query: 119 V 119 Sbjct: 379 H 379 Score = 40.9 bits (94), Expect = 0.056, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 1/60 (1%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C+ C+ C ICP I G + + + C CG+C CPVDAI Sbjct: 103 FCVMCQKCVDICPVDVI-GVPGIKEPASRVIEPEGAVYIDDCKGCGVCVAECPVDAITLS 161 Score = 40.5 bits (93), Expect = 0.074, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 27/64 (42%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E+C+ C CP +AI + + +R+ + I C+ CG C CP D Sbjct: 276 CWDGEKCLYDGGCALKCPTEAIRVVTKRGMEVPSRQKDMGEQSFIMCVRCGACANVCPND 335 Query: 117 AIVE 120 A+ Sbjct: 336 ALQL 339 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 9/71 (12%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C C +C A CP AIT+ + ++D KCI CG+C ++CP +AI Sbjct: 141 DDCKGCGVCVAECPVDAITLSA---------YGEPIEVDEDKCIQCGVCSQSCPWNAIFI 191 Query: 121 GPNFEFATETR 131 N + A ++ Sbjct: 192 AGNAKPAKRSK 202 Score = 34.7 bits (78), Expect = 4.4, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 4/69 (5%) Query: 58 NGEERCIACK---LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C C C +C A+ ++ +G VR + KC CG C +ACP Sbjct: 28 DHIVYCDTCSEEPKCAEVCTKGALQVDDIAIDEEGNT-QVRLIFNKTKCDECGDCVDACP 86 Query: 115 VDAIVEGPN 123 + P Sbjct: 87 SKTLKLDPE 95 Score = 34.7 bits (78), Expect = 4.8, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 14/31 (45%) Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 + CI CG C+ CP AI G + + Sbjct: 5 NEDSCIKCGACEGVCPTAAIEVGDHIVYCDT 35 >gi|297527337|ref|YP_003669361.1| flavoprotein [Staphylothermus hellenicus DSM 12710] gi|297256253|gb|ADI32462.1| flavoprotein [Staphylothermus hellenicus DSM 12710] Length = 253 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 10/65 (15%) Query: 59 GEERCIACKLC---EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 ++CI C C E CP AI + + ID KC C +C CPV Sbjct: 148 DLDKCIYCMKCLLEEGFCPYNAI-------VASSCKYGIHLSIDYSKCRGCEVCVNKCPV 200 Query: 116 DAIVE 120 AI Sbjct: 201 KAIKC 205 >gi|257463174|ref|ZP_05627574.1| NAD-reducing iron-only hydrogenase large subunit [Fusobacterium sp. D12] Length = 260 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 3/68 (4%) Query: 59 GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPV 115 +CI C+ CE+IC Q+ I +G R + ++ +C +CG C CP Sbjct: 146 DVTKCIMCRRCESICRDIQSCNILTGVRRGFSAVVDTAFSKTLEHTRCTFCGQCVSVCPT 205 Query: 116 DAIVEGPN 123 AI E N Sbjct: 206 GAIYETDN 213 >gi|259908516|ref|YP_002648872.1| electron transport complex protein RnfB [Erwinia pyrifoliae Ep1/96] gi|224964138|emb|CAX55645.1| Electron transport complex protein [Erwinia pyrifoliae Ep1/96] gi|283478476|emb|CAY74392.1| Electron transport complex protein rnfB [Erwinia pyrifoliae DSM 12163] gi|310767588|gb|ADP12538.1| electron transport complex protein RnfB [Erwinia sp. Ejp617] Length = 191 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 27/96 (28%), Gaps = 10/96 (10%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E E + E CI C C CP AI + + + Sbjct: 92 EPQPLGDEESREPERKVAWIDEANCIGCTKCIQACPVDAIVGAT----------RAMHTV 141 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134 C C LC CP D I P + +L Sbjct: 142 LSDICTGCDLCVAPCPTDCIEMRPVATTTANWKWDL 177 >gi|217077862|ref|YP_002335580.1| hydrogenase [Thermosipho africanus TCF52B] gi|217037717|gb|ACJ76239.1| hydrogenase [Thermosipho africanus TCF52B] Length = 583 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 3/71 (4%) Query: 57 PNGEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDI--DMIKCIYCGLCQEAC 113 RCI C+ C +C Q + I S T +D+ CI CG C C Sbjct: 139 QRDLSRCIKCQRCVRVCSEIQGMNIYSMIERGYKTIPQTAFDMPVYETNCISCGQCAYLC 198 Query: 114 PVDAIVEGPNF 124 PV AI E P++ Sbjct: 199 PVGAIYETPDW 209 >gi|218962108|ref|YP_001741883.1| putative iron-sulfur cluster-binding protein [Candidatus Cloacamonas acidaminovorans] gi|167730765|emb|CAO81677.1| putative iron-sulfur cluster-binding protein [Candidatus Cloacamonas acidaminovorans] Length = 374 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 28/83 (33%), Gaps = 12/83 (14%) Query: 42 STSPRFRGEHALRRYPNG--EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 R Y ERC C +C CP +AI+ ++ + I Sbjct: 294 YVPDIARKAFRKVYYFYPAVSERCKQCGICVKSCPVKAISWQNDTKP----------YIH 343 Query: 100 MIKCIYCGLCQEACPVDAIVEGP 122 +CI C C E CP AI Sbjct: 344 KEQCIKCLCCHELCPYQAIDIKK 366 Score = 40.1 bits (92), Expect = 0.094, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 16/45 (35%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + Y +C CG+C ++CPV AI + Sbjct: 293 KYVPDIARKAFRKVYYFYPAVSERCKQCGICVKSCPVKAISWQND 337 >gi|161503264|ref|YP_001570376.1| hypothetical protein SARI_01334 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160864611|gb|ABX21234.1| hypothetical protein SARI_01334 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 1174 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 26/144 (18%), Positives = 36/144 (25%), Gaps = 36/144 (25%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPIGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 699 Query: 74 PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP- 114 P A +++ R G + + C C LC E CP Sbjct: 700 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757 Query: 115 -------VDAIVEGPNFEFATETR 131 V AI E E + Sbjct: 758 KDRQNPEVKAINMMSRLEHVEEEK 781 >gi|150020029|ref|YP_001305383.1| dihydroorotate dehydrogenase family protein [Thermosipho melanesiensis BI429] gi|149792550|gb|ABR29998.1| dihydroorotate dehydrogenase family protein [Thermosipho melanesiensis BI429] Length = 360 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 12/62 (19%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+C C +CE +CP AI I+ + I+ KC CGLC+ CP +I Sbjct: 309 NHEKCTLCGICEKVCPYFAIKIDKKVK------------INTYKCFGCGLCESRCPTKSI 356 Query: 119 VE 120 Sbjct: 357 KI 358 >gi|117618882|ref|YP_856035.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560289|gb|ABK37237.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 1191 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 29/101 (28%), Gaps = 24/101 (23%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR------- 85 T FEK + H + CI C C +CP A+ + + Sbjct: 672 TATSRFEKRDIAREIPIWH--------SDICIQCGNCVFVCPHAALRAKFYHQDWLATAP 723 Query: 86 ---------CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + C CG C +ACPV A Sbjct: 724 EAAQSVPVTAKGFPDSRYTLQLYPEDCTGCGQCVKACPVRA 764 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 8/20 (40%), Positives = 9/20 (45%) Query: 99 DMIKCIYCGLCQEACPVDAI 118 CI CG C CP A+ Sbjct: 690 HSDICIQCGNCVFVCPHAAL 709 >gi|54024557|ref|YP_118799.1| putative ferredoxin reductase [Nocardia farcinica IFM 10152] gi|54016065|dbj|BAD57435.1| putative ferredoxin reductase [Nocardia farcinica IFM 10152] Length = 554 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 22/63 (34%), Gaps = 3/63 (4%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 +RC C A CP I ID CI CG C EACPV A+ Sbjct: 7 QRCCNDASCVAECPVDCIRPRPE---DPEFTSAEMLYIDPETCIDCGACFEACPVGAVYA 63 Query: 121 GPN 123 Sbjct: 64 EDE 66 >gi|320653114|gb|EFX21308.1| electron transport complex protein RnfC [Escherichia coli O55:H7 str. 3256-97 TW 07815] Length = 677 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|315618815|gb|EFU99398.1| electron transport complex protein rnfC [Escherichia coli 3431] Length = 740 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|331647118|ref|ZP_08348212.1| electron transport complex protein RnfC [Escherichia coli M605] gi|331043901|gb|EGI16037.1| electron transport complex protein RnfC [Escherichia coli M605] Length = 677 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|293414946|ref|ZP_06657589.1| electron transport complex protein RnfC [Escherichia coli B185] gi|291432594|gb|EFF05573.1| electron transport complex protein RnfC [Escherichia coli B185] Length = 611 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|225378769|ref|ZP_03755990.1| hypothetical protein ROSEINA2194_04439 [Roseburia inulinivorans DSM 16841] gi|225209361|gb|EEG91715.1| hypothetical protein ROSEINA2194_04439 [Roseburia inulinivorans DSM 16841] Length = 329 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 33/120 (27%), Gaps = 20/120 (16%) Query: 4 FRCNVSFLFLK--EFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 + + FLF + + ++ P +L Y Sbjct: 221 LQRAIGFLFGWKVSILVILLILSTMIYRPFCKYLCPLGAIY---GIFNRFSLYHYEIDAA 277 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 +C C LC C E+ CI CG C++ CP AI G Sbjct: 278 KCTKCGLCAKKCDMGVKVYENPNSVE---------------CIRCGKCKDVCPTGAIHSG 322 >gi|197285165|ref|YP_002151037.1| electron transport complex protein RnfC [Proteus mirabilis HI4320] gi|194682652|emb|CAR42773.1| electron transport complex protein [Proteus mirabilis HI4320] Length = 839 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 1/58 (1%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 N EE CI C C CP+ + + G ++ CI CG C CP Sbjct: 374 DNIEEACIRCGQCVDACPSG-LLPQQLYWFSKGKEHEKAQQHNLFDCIECGACAFVCP 430 >gi|168178613|ref|ZP_02613277.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum NCTC 2916] gi|226948460|ref|YP_002803551.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum A2 str. Kyoto] gi|182670715|gb|EDT82689.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum NCTC 2916] gi|226844543|gb|ACO87209.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum A2 str. Kyoto] Length = 1172 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 40/126 (31%), Gaps = 24/126 (19%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------ITIESGPRCHDGTRRTV 94 G+TS RG + ++CI C C ICP E + Sbjct: 668 GTTSYEKRGIAVMIPEWQ-IDKCIQCNQCSYICPHSVIRAYLLNKDEKEKAPSAFETKKA 726 Query: 95 ----------RYDIDMIKCIYCGLCQEACPVD--AIVEGP---NFEFATETRQ--ELYYD 137 R I + C CG C + CP A++ E +E + Sbjct: 727 TGKGLEELGYRIQISPLDCTGCGNCADVCPAPGKALIMKNAEEQIEMQSENWEFGLNITT 786 Query: 138 KERLLN 143 KE L++ Sbjct: 787 KENLMD 792 >gi|83941743|ref|ZP_00954205.1| iron-sulfur cluster-binding protein [Sulfitobacter sp. EE-36] gi|83847563|gb|EAP85438.1| iron-sulfur cluster-binding protein [Sulfitobacter sp. EE-36] Length = 650 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 9/82 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C C ++CP+ A+ + C+ CGLC CP DAI Sbjct: 498 DTDACTLCLSCVSLCPSGALGDNPD---------LPQLRFQEDACLQCGLCANVCPEDAI 548 Query: 119 VEGPNFEFATETRQELYYDKER 140 P + ++ +E Sbjct: 549 TLKPQLNLTAQAFTQVVLHEEE 570 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 11/53 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C +CP AIT ID + C CG C CP AI Sbjct: 279 CSNCLDLCPTGAITSAGE-----------HVAIDPMICAGCGSCSAVCPSGAI 320 >gi|322805514|emb|CBZ03078.1| pyruvate-flavodoxin oxidoreductase [Clostridium botulinum H04402 065] Length = 1172 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 43/126 (34%), Gaps = 24/126 (19%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA---QAITIESGPRCHDGTRRTV--- 94 G+TS RG + ++CI C C ICP +A + + + Sbjct: 668 GTTSYEKRGIAVMIPEWQ-IDKCIQCNQCSYICPHSVIRAYLLNKDEKEKSPSAFETKKA 726 Query: 95 ----------RYDIDMIKCIYCGLCQEACPVD--AIVEGP---NFEFATETRQ--ELYYD 137 R I + C CG C + CP A++ E +E + Sbjct: 727 TGKGLEELGYRIQISPLDCTGCGNCADVCPAPGKALIMKNAEEQIEMQSENWEFGLNITT 786 Query: 138 KERLLN 143 KE L++ Sbjct: 787 KENLMD 792 >gi|315180126|gb|ADT87040.1| iron-sulfur cluster-binding protein [Vibrio furnissii NCTC 11218] Length = 553 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 9/75 (12%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C A+CP +A+ E C+ CGLC +ACP +A+ Sbjct: 418 TDCTLCMSCVAVCPTRALHHEGELPS---------LKFVEQDCVQCGLCVKACPENALTA 468 Query: 121 GPNFEFATETRQELY 135 + RQ + Sbjct: 469 VQQLNWNATQRQSVV 483 Score = 40.1 bits (92), Expect = 0.091, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 6/54 (11%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 C C CPA A++ E + R I+ C G C +CP +AI Sbjct: 186 CDRCVDACPAGALSSEGSEQTGH------RIQINPYLCQGVGTCATSCPTEAIH 233 >gi|310826591|ref|YP_003958948.1| FdhA-II protein [Eubacterium limosum KIST612] gi|308738325|gb|ADO35985.1| FdhA-II protein [Eubacterium limosum KIST612] Length = 895 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 5/69 (7%) Query: 55 RYPNGEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDI----DMIKCIYCGLC 109 Y +CI C C +C Q + + T +D+ C+ CG C Sbjct: 141 FYTYDPNKCILCNRCVKVCEHLQCNHVLAKCDRGYETNINPVFDMLRGDKNSNCVNCGNC 200 Query: 110 QEACPVDAI 118 CP A+ Sbjct: 201 IAECPTGAL 209 >gi|307138283|ref|ZP_07497639.1| electron transport complex protein RnfC [Escherichia coli H736] gi|331642222|ref|ZP_08343357.1| electron transport complex protein RnfC [Escherichia coli H736] gi|331039020|gb|EGI11240.1| electron transport complex protein RnfC [Escherichia coli H736] Length = 621 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|256158986|ref|ZP_05456823.1| dihydropyrimidine dehydrogenase [Brucella ceti M490/95/1] gi|256254344|ref|ZP_05459880.1| dihydropyrimidine dehydrogenase [Brucella ceti B1/94] gi|261221504|ref|ZP_05935785.1| dihydropyrimidine dehydrogenase [Brucella ceti B1/94] gi|265997467|ref|ZP_06110024.1| dihydropyrimidine dehydrogenase [Brucella ceti M490/95/1] gi|260920088|gb|EEX86741.1| dihydropyrimidine dehydrogenase [Brucella ceti B1/94] gi|262551935|gb|EEZ07925.1| dihydropyrimidine dehydrogenase [Brucella ceti M490/95/1] Length = 436 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 6/79 (7%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI C C A S +++ +C+ Sbjct: 330 QYLNLNYVTKARINQDLCIQCGRCHI-----ACEDTSHQAITAMVNGARHFEVIDEECVG 384 Query: 106 CGLCQEACPV-DAIVEGPN 123 C LC CPV + I Sbjct: 385 CNLCVNVCPVENCITMEQI 403 >gi|255308110|ref|ZP_05352281.1| putative nitroreductase [Clostridium difficile ATCC 43255] Length = 258 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 31/84 (36%), Gaps = 11/84 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E CI C LC+ CP I IE+ I C+ CG C CP AI Sbjct: 10 DKELCIGCGLCKNDCPVNNIIIENKKSV-----------IKKQDCLMCGHCAAICPTKAI 58 Query: 119 VEGPNFEFATETRQELYYDKERLL 142 E E + D + LL Sbjct: 59 TLTGFDEPPIELTNKPKLDSDELL 82 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 17/33 (51%) Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + ++D CI CGLC+ CPV+ I+ Sbjct: 1 MKYQHIIEVDKELCIGCGLCKNDCPVNNIIIEN 33 >gi|254976689|ref|ZP_05273161.1| putative nitroreductase [Clostridium difficile QCD-66c26] gi|255094072|ref|ZP_05323550.1| putative nitroreductase [Clostridium difficile CIP 107932] gi|255518484|ref|ZP_05386160.1| putative nitroreductase [Clostridium difficile QCD-97b34] gi|255651604|ref|ZP_05398506.1| putative nitroreductase [Clostridium difficile QCD-37x79] gi|306521411|ref|ZP_07407758.1| putative nitroreductase [Clostridium difficile QCD-32g58] Length = 258 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 31/84 (36%), Gaps = 11/84 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E CI C LC+ CP I IE+ I C+ CG C CP AI Sbjct: 10 DKELCIGCGLCKNDCPVNNIIIENKKSV-----------IKKQDCLMCGHCAAICPTKAI 58 Query: 119 VEGPNFEFATETRQELYYDKERLL 142 E E + D + LL Sbjct: 59 TLTGFDEPPIELTNKPKLDSDELL 82 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 17/33 (51%) Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + ++D CI CGLC+ CPV+ I+ Sbjct: 1 MKYQHIIEVDKELCIGCGLCKNDCPVNNIIIEN 33 >gi|225851829|ref|YP_002732062.1| dihydropyrimidine dehydrogenase [Brucella melitensis ATCC 23457] gi|256264655|ref|ZP_05467187.1| dihydropyrimidine dehydrogenase [Brucella melitensis bv. 2 str. 63/9] gi|225640194|gb|ACO00108.1| dihydroorotate dehydrogenase family protein [Brucella melitensis ATCC 23457] gi|263095024|gb|EEZ18732.1| dihydropyrimidine dehydrogenase [Brucella melitensis bv. 2 str. 63/9] gi|326408324|gb|ADZ65389.1| dihydropyrimidine dehydrogenase [Brucella melitensis M28] gi|326538039|gb|ADZ86254.1| dihydroorotate dehydrogenase family protein [Brucella melitensis M5-90] Length = 436 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 6/79 (7%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI C C A S +++ +C+ Sbjct: 330 QYLNLNYVTKARINQDLCIQCGRCHI-----ACEDTSHQAITAMVNGARHFEVIDEECVG 384 Query: 106 CGLCQEACPV-DAIVEGPN 123 C LC CPV + I Sbjct: 385 CNLCVNVCPVENCITMEQI 403 >gi|220916796|ref|YP_002492100.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219954650|gb|ACL65034.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 438 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 31/86 (36%), Gaps = 10/86 (11%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + ERC+ C C CP AI P R+ R +D +C+ CG+C C A Sbjct: 290 SDRERCLGCGKCSKRCPVGAIPRVPDPDPRF--RKHGRPQVDEARCLGCGVCTLTCNPGA 347 Query: 118 IVEGPNFEFATETRQELYYDKERLLN 143 + R + E L Sbjct: 348 MKLHH--------RTQRVLHPEDLFE 365 >gi|153829757|ref|ZP_01982424.1| iron-sulfur cluster-binding protein [Vibrio cholerae 623-39] gi|148874736|gb|EDL72871.1| iron-sulfur cluster-binding protein [Vibrio cholerae 623-39] Length = 553 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 9/75 (12%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C A+CP +A+ C+ CGLC +ACP A+ Sbjct: 418 SDCTLCMSCVAVCPTRALHPAGDSPA---------LRFIEQDCVQCGLCVKACPEQALSA 468 Query: 121 GPNFEFATETRQELY 135 P + RQ + Sbjct: 469 TPQLNWNKAARQGVV 483 Score = 40.9 bits (94), Expect = 0.067, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 14/81 (17%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 C+ C CPA A++ E + R I+ C G C ACP +AI + Sbjct: 186 CERCVDACPAGALSSEGSDQTGH------RIQINPYLCQGVGTCATACPTEAIH----YA 235 Query: 126 FA-TETRQELYYDKERLLNNG 145 Q+ ERLL N Sbjct: 236 LPNPTDTQKFI---ERLLANY 253 Score = 33.9 bits (76), Expect = 8.1, Method: Composition-based stats. Identities = 6/23 (26%), Positives = 8/23 (34%) Query: 97 DIDMIKCIYCGLCQEACPVDAIV 119 + C C C CP A+ Sbjct: 414 ECQASDCTLCMSCVAVCPTRALH 436 >gi|124027636|ref|YP_001012956.1| hypothetical protein Hbut_0757 [Hyperthermus butylicus DSM 5456] gi|123978330|gb|ABM80611.1| hypothetical protein Hbut_0757 [Hyperthermus butylicus DSM 5456] Length = 494 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 7/60 (11%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +ERC C C CP A+ + +CI CG C+E CP DAI Sbjct: 345 DQERCTLCGACAKECPTGALKLREEAEGSALLFLH-------DRCIACGWCREVCPEDAI 397 Score = 37.0 bits (84), Expect = 0.88, Method: Composition-based stats. Identities = 9/28 (32%), Positives = 13/28 (46%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFE 125 +D +C CG C + CP A+ E Sbjct: 344 VDQERCTLCGACAKECPTGALKLREEAE 371 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 22/49 (44%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 +RCIAC C +CP AIT++ + ++CI CG Sbjct: 379 HDRCIACGWCREVCPEDAITVKRAINPAIIDSLVSLVAGEELRCIVCGN 427 >gi|121534272|ref|ZP_01666096.1| electron transfer flavoprotein, alpha subunit [Thermosinus carboxydivorans Nor1] gi|121307042|gb|EAX47960.1| electron transfer flavoprotein, alpha subunit [Thermosinus carboxydivorans Nor1] Length = 399 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 11/73 (15%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++C++C C + CP AI +ES + C CG C +ACPV AI+ Sbjct: 8 DQCVSCGACVSTCPFGAIIMESDNKA-----------FITEACTACGACIDACPVGAIIR 56 Query: 121 GPNFEFATETRQE 133 + A + + Sbjct: 57 EEEEKTAAADKDQ 69 >gi|117623815|ref|YP_852728.1| electron transport complex protein RnfC [Escherichia coli APEC O1] gi|166225090|sp|A1ABH4|RNFC_ECOK1 RecName: Full=Electron transport complex protein rnfC gi|115512939|gb|ABJ01014.1| electron transport complex protein RnfC [Escherichia coli APEC O1] Length = 708 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|83951608|ref|ZP_00960340.1| dihydroorotate dehydrogenase family protein [Roseovarius nubinhibens ISM] gi|83836614|gb|EAP75911.1| dihydroorotate dehydrogenase family protein [Roseovarius nubinhibens ISM] Length = 434 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 28/82 (34%), Gaps = 8/82 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117 ++ CI C C A C E +++ +C+ C LC CPV+ Sbjct: 343 DQDACIKCGRCYAAC-------EDTSHQAISMSPDRVFEVKDDECVACNLCVNVCPVEGC 395 Query: 118 IVEGPNFEFATETRQELYYDKE 139 I + R +K+ Sbjct: 396 ITMEQMAPGTVDPRTGKVVEKD 417 Score = 34.3 bits (77), Expect = 5.7, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 14/35 (40%), Gaps = 3/35 (8%) Query: 92 RTVRYDIDMIKCIYCGLCQEACP---VDAIVEGPN 123 + ID CI CG C AC AI P+ Sbjct: 336 YIAKARIDQDACIKCGRCYAACEDTSHQAISMSPD 370 >gi|308271717|emb|CBX28325.1| hypothetical protein N47_G36490 [uncultured Desulfobacterium sp.] Length = 406 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 11/64 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + +CI C +CE +C AI + DI KC CG+C +C A+ Sbjct: 344 DQGKCICCGVCEEVCNWGAIKVIDD-----------TVDIVKEKCEGCGVCVCSCTEGAL 392 Query: 119 VEGP 122 Sbjct: 393 WLDN 396 Score = 34.3 bits (77), Expect = 5.6, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 21/45 (46%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 T + + T+ + +D KCI CG+C+E C AI + Sbjct: 324 TFDEAIVTYGKTKGKIVVSVDQGKCICCGVCEEVCNWGAIKVIDD 368 >gi|293409940|ref|ZP_06653516.1| conserved hypothetical protein [Escherichia coli B354] gi|291470408|gb|EFF12892.1| conserved hypothetical protein [Escherichia coli B354] Length = 634 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQNCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|254688596|ref|ZP_05151850.1| dihydropyrimidine dehydrogenase [Brucella abortus bv. 6 str. 870] gi|260754066|ref|ZP_05866414.1| dihydropyrimidine dehydrogenase [Brucella abortus bv. 6 str. 870] gi|260674174|gb|EEX60995.1| dihydropyrimidine dehydrogenase [Brucella abortus bv. 6 str. 870] Length = 436 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 6/79 (7%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI C C A S +++ +C+ Sbjct: 330 QYLNLNYVTKARINQDLCIQCGRCHI-----ACEDTSHQAITAMVNGARHFEVIDEECVG 384 Query: 106 CGLCQEACPV-DAIVEGPN 123 C LC CPV + I Sbjct: 385 CNLCVNVCPVENCITMEQI 403 >gi|253701320|ref|YP_003022509.1| electron transfer flavoprotein subunit alpha [Geobacter sp. M21] gi|251776170|gb|ACT18751.1| Electron transfer flavoprotein alpha subunit [Geobacter sp. M21] Length = 439 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 28/100 (28%), Positives = 38/100 (38%), Gaps = 22/100 (22%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACK-LCEAICPAQAITIESGPRCHDGTRRTVRYD 97 E + RG+ A+ E RCIAC C++ CP AI + Sbjct: 3 EAVKKPKKPRGKAAVL-----EGRCIACGARCQSACPVDAIQMNEAGEP----------I 47 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 +D KCI C C + CP AI E A ++ D Sbjct: 48 VDASKCIGCVKCVKVCPAQAI------EMAFTPEEKRILD 81 >gi|123492285|ref|XP_001326031.1| Dihydroorotate dehydrogenase family protein [Trichomonas vaginalis G3] gi|121908939|gb|EAY13808.1| Dihydroorotate dehydrogenase family protein [Trichomonas vaginalis G3] Length = 372 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 8/66 (12%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C+ C C C ++ ++ +CI C LC CP Sbjct: 301 HAEIDDATCLQCGKCALSCRDN--------SVEAIHLIDGKWKVNHDECIGCALCHSVCP 352 Query: 115 VDAIVE 120 V A+ Sbjct: 353 VQAMHM 358 >gi|121607727|ref|YP_995534.1| FAD/NAD(P)-binding oxidoreductase subunit [Verminephrobacter eiseniae EF01-2] gi|121552367|gb|ABM56516.1| benzoyl-CoA oxygenase, component A [Verminephrobacter eiseniae EF01-2] Length = 424 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 26/68 (38%), Gaps = 11/68 (16%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 +R++ E CI C CEA CP AIT + Y + C C C Sbjct: 8 QVIRQHLIDPEICIRCNTCEATCPVNAITHDEH-----------NYVVRAELCNACLACI 56 Query: 111 EACPVDAI 118 CP AI Sbjct: 57 PPCPTGAI 64 Score = 38.2 bits (87), Expect = 0.40, Method: Composition-based stats. Identities = 14/37 (37%), Positives = 17/37 (45%), Gaps = 3/37 (8%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134 ID CI C C+ CPV+AI + R EL Sbjct: 15 IDPEICIRCNTCEATCPVNAITH-DEHNYVV--RAEL 48 >gi|56696676|ref|YP_167037.1| iron-sulfur cluster-binding protein [Ruegeria pomeroyi DSS-3] gi|56678413|gb|AAV95079.1| iron-sulfur cluster-binding protein [Ruegeria pomeroyi DSS-3] Length = 649 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 9/82 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C C ++CP+ A+ + + C+ CG+C+ CP AI Sbjct: 497 NTDACTLCLSCVSLCPSGALIDNPD---------LPQLNFQEDACLQCGICRTICPEQAI 547 Query: 119 VEGPNFEFATETRQELYYDKER 140 P + + + ++E Sbjct: 548 TLVPRLDLSDAALGQRVLNEEE 569 Score = 38.5 bits (88), Expect = 0.33, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 19/53 (35%), Gaps = 11/53 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C ICP AIT ID + C CG C CP AI Sbjct: 278 CSNCLDICPTGAITSAGD-----------HVAIDPMVCAGCGACAALCPSTAI 319 >gi|56460896|ref|YP_156177.1| electron transport complex protein RnfC [Idiomarina loihiensis L2TR] gi|56179906|gb|AAV82628.1| Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Idiomarina loihiensis L2TR] Length = 556 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 30/88 (34%), Gaps = 2/88 (2%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C C CPA + + ++ CI CG C CP I Sbjct: 380 CIRCGACADACPA-TLQPQQLQWLAKAKDYESLEKHNLFDCIECGACAYVCP-SEIPLVH 437 Query: 123 NFEFATETRQELYYDKERLLNNGDRWES 150 + A + + +K + R+E+ Sbjct: 438 YYRKAKAEVRNIAREKAKAEQARKRFEA 465 >gi|17987922|ref|NP_540556.1| dihydropyrimidine dehydrogenase [Brucella melitensis bv. 1 str. 16M] gi|256044012|ref|ZP_05446923.1| dihydropyrimidine dehydrogenase [Brucella melitensis bv. 1 str. Rev.1] gi|256112806|ref|ZP_05453727.1| dihydropyrimidine dehydrogenase [Brucella melitensis bv. 3 str. Ether] gi|260563371|ref|ZP_05833857.1| dihydropyrimidine dehydrogenase [Brucella melitensis bv. 1 str. 16M] gi|265990421|ref|ZP_06102978.1| dihydropyrimidine dehydrogenase [Brucella melitensis bv. 1 str. Rev.1] gi|265994249|ref|ZP_06106806.1| dihydropyrimidine dehydrogenase [Brucella melitensis bv. 3 str. Ether] gi|17983659|gb|AAL52820.1| dihydropyrimidine dehydrogenase (nadp+) [Brucella melitensis bv. 1 str. 16M] gi|260153387|gb|EEW88479.1| dihydropyrimidine dehydrogenase [Brucella melitensis bv. 1 str. 16M] gi|262765362|gb|EEZ11151.1| dihydropyrimidine dehydrogenase [Brucella melitensis bv. 3 str. Ether] gi|263001205|gb|EEZ13780.1| dihydropyrimidine dehydrogenase [Brucella melitensis bv. 1 str. Rev.1] Length = 436 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 6/79 (7%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI C C A S +++ +C+ Sbjct: 330 QYLNLNYVTKARINQDLCIQCGRCHI-----ACEDTSHQAITAMVNGARHFEVIDEECVG 384 Query: 106 CGLCQEACPV-DAIVEGPN 123 C LC CPV + I Sbjct: 385 CNLCVNVCPVENCITMEQI 403 >gi|134299512|ref|YP_001113008.1| NADH dehydrogenase (quinone) [Desulfotomaculum reducens MI-1] gi|134052212|gb|ABO50183.1| NADH dehydrogenase (quinone) [Desulfotomaculum reducens MI-1] Length = 627 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 15/97 (15%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 LRY F+ + + +K AL+ Y E+C C +C +CPA AIT E Sbjct: 543 TTLRY-FRDEYIAHVRDKKCPAGAC----QALKEYYINPEKCKGCTVCSRVCPAGAITGE 597 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + I++ C+ CG C E C +I Sbjct: 598 KKQP----------HVINVDLCLKCGACMEKCKFGSI 624 >gi|121998738|ref|YP_001003525.1| putative glutamate synthase (NADPH) small subunit [Halorhodospira halophila SL1] gi|121590143|gb|ABM62723.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Halorhodospira halophila SL1] Length = 647 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 21/59 (35%), Gaps = 4/59 (6%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C C CP A+ G Y +C+ C +C++ CP I G Sbjct: 590 CFECDNCLVYCPQSAVQRVPKAERATGRYVRTDY----SRCVGCHICRDVCPTGYIEMG 644 >gi|323947999|gb|EGB43992.1| electron transporter [Escherichia coli H120] Length = 643 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|313203348|ref|YP_004042005.1| fad-dependent pyridine nucleotide-disulfide oxidoreductase [Paludibacter propionicigenes WB4] gi|312442664|gb|ADQ79020.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Paludibacter propionicigenes WB4] Length = 443 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 28/121 (23%), Positives = 37/121 (30%), Gaps = 12/121 (9%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYP-NG 59 M F + F+ + + L Y K K K + + YP Sbjct: 1 MEQFIEFAIYGFVFLLIAG--VLLIYILKQKRESKVVEAKIQLAKENHSHEPVSLYPVID 58 Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + RCI C CP G I+ CI G C ACPV+AI Sbjct: 59 QNRCIKSGACVDACP---------EHDILGIVNGKATVINASHCIGHGACFRACPVEAIS 109 Query: 120 E 120 Sbjct: 110 L 110 >gi|331653024|ref|ZP_08354029.1| electron transport complex protein RnfC [Escherichia coli M718] gi|331049122|gb|EGI21194.1| electron transport complex protein RnfC [Escherichia coli M718] Length = 596 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|301026785|ref|ZP_07190189.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 69-1] gi|300395323|gb|EFJ78861.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 69-1] Length = 804 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIHQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|296242973|ref|YP_003650460.1| ABC transporter-like protein [Thermosphaera aggregans DSM 11486] gi|296095557|gb|ADG91508.1| ABC transporter related protein [Thermosphaera aggregans DSM 11486] Length = 602 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 5/71 (7%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + R ++C C CP + D + I KCI CG+C + Sbjct: 6 VVDRDYCKPDKCTL--ECIRFCPVN---RTKKVKAIDLSEDKTHSVIFEDKCIGCGICVK 60 Query: 112 ACPVDAIVEGP 122 CP +AI Sbjct: 61 KCPFNAISIVN 71 >gi|183599241|ref|ZP_02960734.1| hypothetical protein PROSTU_02700 [Providencia stuartii ATCC 25827] gi|188021471|gb|EDU59511.1| hypothetical protein PROSTU_02700 [Providencia stuartii ATCC 25827] Length = 969 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 26/82 (31%), Gaps = 5/82 (6%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEER----CIACKLCEAICPAQAITIESGPRCHDGTRR 92 P K G++ CI C LC CPA A+ + G Sbjct: 348 PDLKVPVVKICNCLLVPSVEEVGQKPIEEACIRCGLCVEACPA-ALLPQQLYWFSKGKEH 406 Query: 93 TVRYDIDMIKCIYCGLCQEACP 114 ++ CI CG C CP Sbjct: 407 EKAQKHNLFDCIECGACAYVCP 428 >gi|153938019|ref|YP_001392647.1| [Fe] hydrogenase [Clostridium botulinum F str. Langeland] gi|152933915|gb|ABS39413.1| [Fe] hydrogenase [Clostridium botulinum F str. Langeland] gi|295320632|gb|ADG01010.1| [Fe] hydrogenase [Clostridium botulinum F str. 230613] Length = 497 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 7/69 (10%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIKCIYCGLC 109 + +C C LC+ +CP AI P R I+ CI CG C Sbjct: 135 YIDQNKCRECGLCKKVCPYNAIVEVMRPCKKVCPTGALEINPDDKRAMIEKENCINCGAC 194 Query: 110 QEACPVDAI 118 ACP AI Sbjct: 195 MAACPFGAI 203 >gi|148361193|ref|YP_001252400.1| electron transport complex protein [Legionella pneumophila str. Corby] gi|296108529|ref|YP_003620230.1| hypothetical protein lpa_04189 [Legionella pneumophila 2300/99 Alcoy] gi|148282966|gb|ABQ57054.1| Electron transport complex protein [Legionella pneumophila str. Corby] gi|295650431|gb|ADG26278.1| hypothetical protein lpa_04189 [Legionella pneumophila 2300/99 Alcoy] Length = 204 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 13/93 (13%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C CP AI S + + I +C CGLC + CPVD I Sbjct: 82 DECIGCTKCIKACPVDAIIGSSK----------LMHAIITHECTGCGLCVDPCPVDCIEM 131 Query: 121 GPNFEFATETRQ--ELYYDKERLLNNGDRWESE 151 A + Y+ +++ D E + Sbjct: 132 VS-LSAAGYDKDLARQRYNAKQMRQLRDEHEKQ 163 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 15/35 (42%), Positives = 17/35 (48%) Query: 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 D TR I +CI C C +ACPVDAI Sbjct: 65 KEAIDNTRPPSVAAIKEDECIGCTKCIKACPVDAI 99 >gi|139438746|ref|ZP_01772230.1| Hypothetical protein COLAER_01233 [Collinsella aerofaciens ATCC 25986] gi|133775826|gb|EBA39646.1| Hypothetical protein COLAER_01233 [Collinsella aerofaciens ATCC 25986] Length = 1185 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 17/101 (16%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES--------------- 82 FE G+++ RG + + + +CI C C +CP I + Sbjct: 680 FELGASAYEKRGVAVVVPHWDE-TKCIQCNQCAYVCPHATIRPFAMTEDEAAAAPEATRT 738 Query: 83 -GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + + C+ C C + CP A+ P Sbjct: 739 LDAMGPKAKGMKFTMAVSPLDCMGCTNCVKVCPKGALEMVP 779 >gi|90412117|ref|ZP_01220123.1| electron transport complex protein RnfB [Photobacterium profundum 3TCK] gi|90326841|gb|EAS43226.1| electron transport complex protein RnfB [Photobacterium profundum 3TCK] Length = 192 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 29/88 (32%), Gaps = 10/88 (11%) Query: 47 FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 E+ E+ CI C C CP AI + + + +C C Sbjct: 97 HEEENIKTVAFIHEDMCIGCTKCIQACPVDAIVGGTK----------SMHTVIKDECTGC 146 Query: 107 GLCQEACPVDAIVEGPNFEFATETRQEL 134 LC CP D I P + + +L Sbjct: 147 DLCVAPCPTDCIEMIPVKDTPESWKWDL 174 >gi|314934357|ref|ZP_07841716.1| formate dehydrogenase, alpha subunit [Staphylococcus caprae C87] gi|313652287|gb|EFS16050.1| formate dehydrogenase, alpha subunit [Staphylococcus caprae C87] Length = 984 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 30/89 (33%), Gaps = 13/89 (14%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P+EK Y ++CI C C C + R + Sbjct: 131 PYEKDYGP----------FYRYDPDQCILCGRCVEACQDIEVNETISIDWDREHPRVIWD 180 Query: 97 D---IDMIKCIYCGLCQEACPVDAIVEGP 122 + I+ C+ CG C CP +A++E Sbjct: 181 NDVPINESSCVSCGQCATVCPCNAMMEVN 209 Score = 41.2 bits (95), Expect = 0.048, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 16/68 (23%), Gaps = 8/68 (11%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105 R C C CE Y D +CI Sbjct: 90 RILEKHMLYCTVCDYNNGDCEIHNTMDEWGIQHQTYEYKEKPYEKDYGPFYRYDPDQCIL 149 Query: 106 CGLCQEAC 113 CG C EAC Sbjct: 150 CGRCVEAC 157 >gi|297539546|ref|YP_003675315.1| RnfABCDGE type electron transport complex subunit C [Methylotenera sp. 301] gi|297258893|gb|ADI30738.1| electron transport complex, RnfABCDGE type, C subunit [Methylotenera sp. 301] Length = 640 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 26/134 (19%), Positives = 42/134 (31%), Gaps = 9/134 (6%) Query: 35 NYPFEKGSTSPRFRGEHA----LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT 90 + P E+ + A L P CI C C CP + + Sbjct: 352 DLPNEQVPITKAANCIIAAAPDLFAAPPPAMPCIRCARCADACPVN-LQPQELYWFSKAD 410 Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWES 150 D + CI CG C CP I + +A + + DK + + R + Sbjct: 411 NFEKARDYHLFDCIECGCCTYVCP-SDIPLVQYYRYAKS--EIIALDKAKEAADLARERN 467 Query: 151 EI-VRNIVTDSPYR 163 + + I + R Sbjct: 468 DFRLARIEREKLER 481 >gi|294674486|ref|YP_003575102.1| dihydroorotate oxidase [Prevotella ruminicola 23] gi|294472971|gb|ADE82360.1| dihydroorotate oxidase [Prevotella ruminicola 23] Length = 398 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 22/70 (31%), Gaps = 8/70 (11%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + ERCI C C C + + I KC+ C LC+ Sbjct: 331 MVYPKVDHERCIGCGRCYISCMDGGHQAIAFEE--------RQPRIIGTKCVGCHLCRLV 382 Query: 113 CPVDAIVEGP 122 CP AI Sbjct: 383 CPTGAIGLTK 392 >gi|256368743|ref|YP_003106249.1| dihydropyrimidine dehydrogenase [Brucella microti CCM 4915] gi|255998901|gb|ACU47300.1| dihydropyrimidine dehydrogenase [Brucella microti CCM 4915] Length = 436 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 6/79 (7%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI C C A S +++ +C+ Sbjct: 330 QYLNLNYVTKARINQDLCIQCGRCHI-----ACEDTSHQAITAMVNGARHFEVIDEECVG 384 Query: 106 CGLCQEACPV-DAIVEGPN 123 C LC CPV + I Sbjct: 385 CNLCVNVCPVENCITMEQI 403 >gi|254701102|ref|ZP_05162930.1| dihydropyrimidine dehydrogenase [Brucella suis bv. 5 str. 513] gi|261751635|ref|ZP_05995344.1| dihydropyrimidine dehydrogenase [Brucella suis bv. 5 str. 513] gi|261741388|gb|EEY29314.1| dihydropyrimidine dehydrogenase [Brucella suis bv. 5 str. 513] Length = 436 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 6/79 (7%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI C C A S +++ +C+ Sbjct: 330 QYLNLNYVTKARINQDLCIQCGRCHI-----ACEDTSHQAITAMVNGARHFEVIDEECVG 384 Query: 106 CGLCQEACPV-DAIVEGPN 123 C LC CPV + I Sbjct: 385 CNLCVNVCPVENCITMEQI 403 >gi|268318125|ref|YP_003291844.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit [Rhodothermus marinus DSM 4252] gi|262335659|gb|ACY49456.1| pyruvate/ketoisovalerate oxidoreductase, gamma subunit [Rhodothermus marinus DSM 4252] Length = 306 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 10/65 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C+ C LC A CP AI + + C CG+C CP A+ Sbjct: 237 NEALCVNCLLCWAHCPEPAIVVHDRLMEGF----------NYDYCKGCGICVAMCPTGAL 286 Query: 119 VEGPN 123 P Sbjct: 287 TMVPE 291 >gi|226950727|ref|YP_002805818.1| [Fe] hydrogenase [Clostridium botulinum A2 str. Kyoto] gi|226844550|gb|ACO87216.1| [Fe] hydrogenase [Clostridium botulinum A2 str. Kyoto] gi|322807610|emb|CBZ05185.1| periplasmic [Fe] hydrogenase [Clostridium botulinum H04402 065] Length = 497 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 7/69 (10%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIKCIYCGLC 109 + +C C LC+ +CP AI P R I+ CI CG C Sbjct: 135 YIDQNKCRECGLCKKVCPYNAIVEVMRPCKKVCPTGALEINPDDKRAMIEKENCINCGAC 194 Query: 110 QEACPVDAI 118 ACP AI Sbjct: 195 MAACPFGAI 203 >gi|225626809|ref|ZP_03784848.1| dihydroorotate dehydrogenase family protein [Brucella ceti str. Cudo] gi|254707974|ref|ZP_05169802.1| dihydropyrimidine dehydrogenase [Brucella pinnipedialis M163/99/10] gi|254709446|ref|ZP_05171257.1| dihydropyrimidine dehydrogenase [Brucella pinnipedialis B2/94] gi|256030940|ref|ZP_05444554.1| dihydropyrimidine dehydrogenase [Brucella pinnipedialis M292/94/1] gi|260168075|ref|ZP_05754886.1| dihydropyrimidine dehydrogenase [Brucella sp. F5/99] gi|261315465|ref|ZP_05954662.1| dihydropyrimidine dehydrogenase [Brucella pinnipedialis M163/99/10] gi|261316968|ref|ZP_05956165.1| dihydropyrimidine dehydrogenase [Brucella pinnipedialis B2/94] gi|261757524|ref|ZP_06001233.1| dihydropyrimidine dehydrogenase [Brucella sp. F5/99] gi|265988004|ref|ZP_06100561.1| dihydropyrimidine dehydrogenase [Brucella pinnipedialis M292/94/1] gi|225618466|gb|EEH15509.1| dihydroorotate dehydrogenase family protein [Brucella ceti str. Cudo] gi|261296191|gb|EEX99687.1| dihydropyrimidine dehydrogenase [Brucella pinnipedialis B2/94] gi|261304491|gb|EEY07988.1| dihydropyrimidine dehydrogenase [Brucella pinnipedialis M163/99/10] gi|261737508|gb|EEY25504.1| dihydropyrimidine dehydrogenase [Brucella sp. F5/99] gi|264660201|gb|EEZ30462.1| dihydropyrimidine dehydrogenase [Brucella pinnipedialis M292/94/1] Length = 436 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 6/79 (7%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI C C A S +++ +C+ Sbjct: 330 QYLNLNYVTKARINQDLCIQCGRCHI-----ACEDTSHQAITAMVNGARHFEVIDEECVG 384 Query: 106 CGLCQEACPV-DAIVEGPN 123 C LC CPV + I Sbjct: 385 CNLCVNVCPVENCITMEQI 403 >gi|91204283|emb|CAJ71936.1| hypothetical protein kustc1191 [Candidatus Kuenenia stuttgartiensis] Length = 308 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 11/77 (14%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 F + + E CI C C C AIT+ + + ID Sbjct: 173 PQIKDFGVHAVEPVFVDAECECIECMKCVEACREDAITV-----------KDAQVTIDKE 221 Query: 102 KCIYCGLCQEACPVDAI 118 KC+ CG+C + CPV I Sbjct: 222 KCVECGICAKVCPVGTI 238 >gi|34498747|ref|NP_902962.1| ferredoxin [Chromobacterium violaceum ATCC 12472] gi|34104598|gb|AAQ60956.1| Electron transport complex protein [Chromobacterium violaceum ATCC 12472] Length = 257 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 29/128 (22%), Positives = 43/128 (33%), Gaps = 16/128 (12%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 PF+ P+ R +R CI C LC CP AI + Sbjct: 64 IPFDPAGPQPKPRALAVIRED-----SCIGCTLCIQACPVDAIVGAAKQ----------M 108 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRN 155 + + +C C LC CPVD I P + R+ + + D ++ R+ Sbjct: 109 HTVIADECTGCELCLAPCPVDCIDLVPVADPDDGKRERVMARAAQARKRFDARQARKDRD 168 Query: 156 IVTDSPYR 163 D R Sbjct: 169 -AADKARR 175 >gi|331269853|ref|YP_004396345.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum BKT015925] gi|329126403|gb|AEB76348.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum BKT015925] Length = 411 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 26/84 (30%), Gaps = 6/84 (7%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 K + ++C+ C C C G + + ++ Sbjct: 321 KNIIPAEKLDRDYIVYPEFDMDKCVGCGRCYISCYDG------GHQAIEWDSENRSLVLN 374 Query: 100 MIKCIYCGLCQEACPVDAIVEGPN 123 KC+ C LC CPV I +G Sbjct: 375 EEKCVGCHLCSNVCPVQCINKGKI 398 >gi|317485154|ref|ZP_07944036.1| iron only hydrogenase large subunit domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316923689|gb|EFV44893.1| iron only hydrogenase large subunit domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 417 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 29/83 (34%), Gaps = 9/83 (10%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 + + +L +E+CI C C+ CP AI E+ R Sbjct: 10 EYELNVPETGVQPDSLTFVEIDQEKCIGCDTCQQYCPTGAIYGETFEPHTIKYR------ 63 Query: 98 IDMIKCIYCGLCQEACPVDAIVE 120 CI CG C CP AI E Sbjct: 64 ---ELCINCGQCLTHCPSMAIYE 83 Score = 42.0 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%) Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 +ID KCI C CQ+ CP AI G FE T +EL + Sbjct: 26 TFVEIDQEKCIGCDTCQQYCPTGAIY-GETFEPHTIKYRELCIN 68 >gi|315180795|gb|ADT87709.1| electron transport complex protein RnfC [Vibrio furnissii NCTC 11218] Length = 824 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 3/101 (2%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C C CPA + + ++++ CI CG C CP I Sbjct: 378 CIRCGQCADACPAS-LLPQQLYWHSKAEEYDKCEELNLKDCIECGACAYVCP-SEIPLVQ 435 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + + + ++ E R+E + R + + R Sbjct: 436 YYRQSKAEIKNRQWEAEAAERAKLRFEEKKAR-MEREKAER 475 Score = 33.9 bits (76), Expect = 6.6, Method: Composition-based stats. Identities = 8/16 (50%), Positives = 10/16 (62%) Query: 99 DMIKCIYCGLCQEACP 114 + CI CG C +ACP Sbjct: 374 YEMACIRCGQCADACP 389 >gi|331657598|ref|ZP_08358560.1| electron transport complex protein RnfC [Escherichia coli TA206] gi|331055846|gb|EGI27855.1| electron transport complex protein RnfC [Escherichia coli TA206] Length = 622 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|307310800|ref|ZP_07590446.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli W] gi|306908978|gb|EFN39474.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli W] Length = 608 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|301064321|ref|ZP_07204755.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein [delta proteobacterium NaphS2] gi|300441600|gb|EFK05931.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein [delta proteobacterium NaphS2] Length = 1395 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 22/61 (36%), Gaps = 6/61 (9%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C +C CP AI + +R + C CG C ACP Sbjct: 1321 HVNEHYCIGCGMCGDACPYGAIGLVDLETGGQVSR------VQPALCKGCGACAVACPTG 1374 Query: 117 A 117 A Sbjct: 1375 A 1375 Score = 37.4 bits (85), Expect = 0.74, Method: Composition-based stats. Identities = 11/29 (37%), Positives = 15/29 (51%) Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 V ++ CI CG+C +ACP AI Sbjct: 1318 VVSHVNEHYCIGCGMCGDACPYGAIGLVD 1346 Score = 35.5 bits (80), Expect = 2.6, Method: Composition-based stats. Identities = 10/18 (55%), Positives = 10/18 (55%) Query: 98 IDMIKCIYCGLCQEACPV 115 ID C CG C E CPV Sbjct: 19 IDPDACTACGDCAEVCPV 36 >gi|260769054|ref|ZP_05877988.1| electron transport complex protein RnfC [Vibrio furnissii CIP 102972] gi|260617084|gb|EEX42269.1| electron transport complex protein RnfC [Vibrio furnissii CIP 102972] Length = 875 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 3/101 (2%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C C CPA + + ++++ CI CG C CP I Sbjct: 378 CIRCGQCADACPAS-LLPQQLYWHSKAEEYDKCEELNLKDCIECGACAYVCP-SEIPLVQ 435 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + + + ++ E R+E + R + + R Sbjct: 436 YYRQSKAEIKNRQWEAEAAERAKLRFEEKKAR-MEREKAER 475 Score = 33.9 bits (76), Expect = 6.6, Method: Composition-based stats. Identities = 8/16 (50%), Positives = 10/16 (62%) Query: 99 DMIKCIYCGLCQEACP 114 + CI CG C +ACP Sbjct: 374 YEMACIRCGQCADACP 389 >gi|256022710|ref|ZP_05436575.1| electron transport complex protein RnfC [Escherichia sp. 4_1_40B] Length = 597 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|237796742|ref|YP_002864294.1| [Fe] hydrogenase [Clostridium botulinum Ba4 str. 657] gi|229262438|gb|ACQ53471.1| [Fe] hydrogenase [Clostridium botulinum Ba4 str. 657] Length = 497 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 7/69 (10%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIKCIYCGLC 109 + +C C LC+ +CP AI P R I+ CI CG C Sbjct: 135 YIDQNKCRECGLCKKVCPYNAIVEVMRPCKKVCPTGALEINPDDKRAMIEKENCINCGAC 194 Query: 110 QEACPVDAI 118 ACP AI Sbjct: 195 MAACPFGAI 203 >gi|168212266|ref|ZP_02637891.1| nitroreductase family protein [Clostridium perfringens CPE str. F4969] gi|170716002|gb|EDT28184.1| nitroreductase family protein [Clostridium perfringens CPE str. F4969] Length = 272 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 15/91 (16%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 +CI C LC C I + G I CI CG C CP Sbjct: 1 MMNVDTSKCIGCTLCMQDCIVSDIEMVDGKAH-----------IKNKSCIECGHCIAICP 49 Query: 115 VDAIVEGPNFEFA---TETRQELYYDKERLL 142 +A+ + +++ + ++ D +RLL Sbjct: 50 KEAVSDS-DYDMSKIQEYKKESFDIDSDRLL 79 >gi|169343842|ref|ZP_02864839.1| nitroreductase family protein [Clostridium perfringens C str. JGS1495] gi|169297962|gb|EDS80053.1| nitroreductase family protein [Clostridium perfringens C str. JGS1495] Length = 272 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 15/91 (16%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 +CI C LC C I I G I CI CG C CP Sbjct: 1 MMNVDTSKCIGCTLCMQDCIVSDIEIVDGKAH-----------IKNESCIECGHCIAICP 49 Query: 115 VDAIVEGPNFEFA---TETRQELYYDKERLL 142 +A+ + +++ + ++ D +RLL Sbjct: 50 KEAVSDS-DYDMSKIQEYKKESFDIDSDRLL 79 >gi|168179051|ref|ZP_02613715.1| [Fe] hydrogenase [Clostridium botulinum NCTC 2916] gi|182670135|gb|EDT82111.1| [Fe] hydrogenase [Clostridium botulinum NCTC 2916] Length = 497 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 7/69 (10%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIKCIYCGLC 109 + +C C LC+ +CP AI P R I+ CI CG C Sbjct: 135 YIDQNKCRECGLCKKVCPYNAIVEVMRPCKKVCPTGALEINPDDKRAMIEKENCINCGAC 194 Query: 110 QEACPVDAI 118 ACP AI Sbjct: 195 MAACPFGAI 203 >gi|183221787|ref|YP_001839783.1| hydrogenase-4 subunit G [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189911861|ref|YP_001963416.1| metal (Ni/Fe) hydrogenase small subunit [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167776537|gb|ABZ94838.1| Metal (Ni/Fe) hydrogenase, small subunit [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167780209|gb|ABZ98507.1| Hydrogenase-4 subunit G [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 273 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 30/112 (26%), Positives = 41/112 (36%), Gaps = 13/112 (11%) Query: 24 LRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG 83 + F K +N+ + RG N E C AC CE+ CP +AI Sbjct: 7 FKNFITKKNVLNF-DKVSFVHANNRGIP--TPTKNMENGCGACSECESNCPTKAIQRSGS 63 Query: 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 R D+D KC+ CG+C E CP + R+E Y Sbjct: 64 DRL----------DLDYGKCLQCGICVEVCPEGKLRNSGFIYTIALHREEFY 105 >gi|167746890|ref|ZP_02419017.1| hypothetical protein ANACAC_01602 [Anaerostipes caccae DSM 14662] gi|167653850|gb|EDR97979.1| hypothetical protein ANACAC_01602 [Anaerostipes caccae DSM 14662] Length = 629 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 28/69 (40%), Positives = 31/69 (44%), Gaps = 10/69 (14%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 ALRR+ ERC C C CPA AI+ R Y ID KCI CG C+ Sbjct: 569 ALRRFIISPERCKGCSKCARNCPADAISG----------RIKEPYVIDNDKCIKCGACES 618 Query: 112 ACPVDAIVE 120 AC AI Sbjct: 619 ACAFGAIHI 627 >gi|114328598|ref|YP_745755.1| NAD-dependent formate dehydrogenase alpha subunit (fdsA) [Granulibacter bethesdensis CGDNIH1] gi|114316772|gb|ABI62832.1| NAD-dependent formate dehydrogenase alpha subunit (fdsA) [Granulibacter bethesdensis CGDNIH1] Length = 947 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 4/83 (4%) Query: 55 RYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + +CI C C C A+TIE + + +C+ CG C Sbjct: 159 YFQYDPSKCIVCNRCVRACEEVQGTFALTIEGRGFESRVSPGAAHDNFFSSECVSCGACV 218 Query: 111 EACPVDAIVEGPNFEFATETRQE 133 +ACP ++E E E Sbjct: 219 QACPTATLMEKSVIEIGQPEHSE 241 >gi|66047114|ref|YP_236955.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas syringae pv. syringae B728a] gi|63257821|gb|AAY38917.1| Electron transport complex, RnfABCDGE type, B subunit [Pseudomonas syringae pv. syringae B728a] Length = 291 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 10/75 (13%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 RG + E CI C C CP AI + + + + + +C C Sbjct: 76 RGTAPAQVAFIREAECIGCTKCIQACPVDAILGAAK----------LMHTVIINECTGCD 125 Query: 108 LCQEACPVDAIVEGP 122 LC CPVD I P Sbjct: 126 LCIAPCPVDCIEMHP 140 >gi|238785613|ref|ZP_04629592.1| Electron transport complex protein rnfB [Yersinia bercovieri ATCC 43970] gi|238713500|gb|EEQ05533.1| Electron transport complex protein rnfB [Yersinia bercovieri ATCC 43970] Length = 207 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 24/78 (30%), Gaps = 10/78 (12%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C C CP AI + + + C C LC CP D Sbjct: 111 FIDEANCIGCTKCIQACPVDAIVGAT----------RAMHTVLPDLCTGCDLCVAPCPTD 160 Query: 117 AIVEGPNFEFATETRQEL 134 I P + +L Sbjct: 161 CIEMIPVATTTANWKWDL 178 >gi|110634768|ref|YP_674976.1| formate dehydrogenase, alpha subunit [Mesorhizobium sp. BNC1] gi|110285752|gb|ABG63811.1| NAD-dependent formate dehydrogenase catalytic subunit / NAD-dependent formate dehydrogenase iron-sulfur protein [Chelativorans sp. BNC1] Length = 929 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 5/84 (5%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID----MIKCIYCGLCQEACP 114 + CIAC C C + + G +D+ + C+ CG C +ACP Sbjct: 149 NLDACIACGACVRACR-EVQVNDVIGMAERGNHSVPVFDMHDPMGLSTCVTCGECVQACP 207 Query: 115 VDAIVEGPNFEFATETRQELYYDK 138 A+ E + +TR +DK Sbjct: 208 TGALFEKSLMDGEGKTRVVQSFDK 231 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 2/59 (3%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-IDMIKCIYCGL-CQ 110 P G C+ C C CP A+ +S TR +D + C +CG+ CQ Sbjct: 187 MHDPMGLSTCVTCGECVQACPTGALFEKSLMDGEGKTRVVQSFDKVVDSVCPFCGVGCQ 245 >gi|327252745|gb|EGE64399.1| electron transport complex protein rnfC [Escherichia coli STEC_7v] Length = 633 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 264 PQEEQNCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 321 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 322 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 370 >gi|323956694|gb|EGB52430.1| electron transporter [Escherichia coli H263] Length = 667 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|317133838|ref|YP_004089749.1| hydrogenase large subunit domain protein [Ruminococcus albus 7] gi|315450300|gb|ADU23863.1| hydrogenase large subunit domain protein [Ruminococcus albus 7] Length = 478 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110 + +CI C C +CP AIT P + + + + ID KCI CG C Sbjct: 126 HIDKSKCIECGRCSKVCPYSAITNRVRPCQNACKIKAISINEDSVAAIDNKKCISCGACV 185 Query: 111 EACPVDAI 118 CP AI Sbjct: 186 YQCPFGAI 193 Score = 40.9 bits (94), Expect = 0.059, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 12/64 (18%) Query: 57 PNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C C CE +CP AI+ + H ID KCI CG C + CP Sbjct: 94 YEVTDSCRGCLAHRCEDVCPRGAISFDHNHVAH----------IDKSKCIECGRCSKVCP 143 Query: 115 VDAI 118 AI Sbjct: 144 YSAI 147 >gi|302341854|ref|YP_003806383.1| hypothetical protein Deba_0414 [Desulfarculus baarsii DSM 2075] gi|301638467|gb|ADK83789.1| protein of unknown function DUF362 [Desulfarculus baarsii DSM 2075] Length = 376 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 25/80 (31%), Positives = 29/80 (36%), Gaps = 11/80 (13%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100 R G + R C AC C AICPA + +E R D Sbjct: 294 PPLLARLLGRRLIARPVQEPGLCRACGKCAAICPAGCLRLEG-----------RRASFDH 342 Query: 101 IKCIYCGLCQEACPVDAIVE 120 +CI C C E CPV AI Sbjct: 343 DRCIRCYCCHEVCPVGAITF 362 >gi|296387989|ref|ZP_06877464.1| electron transport complex protein RnfC [Pseudomonas aeruginosa PAb1] Length = 656 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 10/97 (10%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 CI C C +CP + + G ++ CI CG C CP I Sbjct: 368 PCIRCGDCARVCPVS-LLPQQLHFFALGDEHEQLLAHNLFDCIECGACAYVCP-SGIPLV 425 Query: 122 PNFEFAT-ETRQELYYDKERLL---NNGDRWESEIVR 154 + + E R++ +++LL + +R+E R Sbjct: 426 QYYRASKAEIREQ----RQKLLKAEQSRERFEQRQAR 458 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 18/54 (33%), Gaps = 17/54 (31%) Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNI 156 CI CG C CPV + + +F GD E + N+ Sbjct: 369 CIRCGDCARVCPVSLLPQQLHF-----------------FALGDEHEQLLAHNL 405 >gi|291515602|emb|CBK64812.1| Nitroreductase [Alistipes shahii WAL 8301] Length = 287 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 8/62 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI C C +CP+Q E + CI CG C ACP ++ Sbjct: 7 NDASCIRCGRCVKVCPSQIFVQEKAGGDVTLHK--------PENCILCGHCVAACPTGSV 58 Query: 119 VE 120 Sbjct: 59 NH 60 >gi|260769686|ref|ZP_05878619.1| formate dehydrogenase-O major subunit [Vibrio furnissii CIP 102972] gi|260615024|gb|EEX40210.1| formate dehydrogenase-O major subunit [Vibrio furnissii CIP 102972] Length = 1376 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 7/64 (10%) Query: 59 GEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 RCI+C C C A+ T+ D C+ CG C + CP Sbjct: 613 DANRCISCGACVQTCQEETVHGALHFSHSQNRPMFHDGTLMGD---SNCVQCGACVQVCP 669 Query: 115 VDAI 118 A+ Sbjct: 670 TGAL 673 >gi|255008332|ref|ZP_05280458.1| putative dehydrogenase [Bacteroides fragilis 3_1_12] gi|313146055|ref|ZP_07808248.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Bacteroides fragilis 3_1_12] gi|313134822|gb|EFR52182.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Bacteroides fragilis 3_1_12] Length = 607 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 8/74 (10%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + C C C +C AIT ++ +ID KC CGLC++ C Sbjct: 1 MINITDKSECCGCNACGDVCAHNAITFKTDIEGFWYP------EIDKDKCTDCGLCEKVC 54 Query: 114 PVDAIVE--GPNFE 125 P+ I E +FE Sbjct: 55 PIVNIEELKKNDFE 68 >gi|212704112|ref|ZP_03312240.1| hypothetical protein DESPIG_02167 [Desulfovibrio piger ATCC 29098] gi|212672472|gb|EEB32955.1| hypothetical protein DESPIG_02167 [Desulfovibrio piger ATCC 29098] Length = 1182 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/116 (18%), Positives = 30/116 (25%), Gaps = 22/116 (18%) Query: 29 KAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC 86 K + P + + A+ + CI C C +CP AI Sbjct: 651 KLPVSAMEPAGIMPLGTAACEKRGVAINVPEWVADNCIQCCQCSFVCPHAAIRPVVANDE 710 Query: 87 HDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV----DAIVEGP 122 R + C+ CG C E CP A+ P Sbjct: 711 ELAGAPESFVTVPAKGKELTGMKFRMQVYAEDCLGCGSCVEVCPTKPEKRALSMKP 766 >gi|163747832|ref|ZP_02155170.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Oceanibulbus indolifex HEL-45] gi|161378904|gb|EDQ03335.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Oceanibulbus indolifex HEL-45] Length = 654 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 9/82 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ C C C ++CP+ A+ + C+ CGLC+ CP DAI Sbjct: 503 DKDACTLCLSCVSLCPSGALGDNPD---------LPQLRFQEDACLQCGLCEHICPEDAI 553 Query: 119 VEGPNFEFATETRQELYYDKER 140 P + + ++E Sbjct: 554 TLAPQLDLTDAALSQRILNEEE 575 Score = 38.5 bits (88), Expect = 0.33, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 11/55 (20%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C +CP AI + +D + C CG C ACP AI Sbjct: 282 TGCTACLDLCPTGAIVPDGD-----------HVTVDPMICAGCGACSSACPSGAI 325 >gi|90412116|ref|ZP_01220122.1| electron transport complex protein RnfC [Photobacterium profundum 3TCK] gi|90326840|gb|EAS43225.1| electron transport complex protein RnfC [Photobacterium profundum 3TCK] Length = 930 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 48/155 (30%), Gaps = 23/155 (14%) Query: 16 FVGA--FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 +G L + + P K + L + + CI C C C Sbjct: 338 IIGGSLMGFTLPH-------ADVPVTKVTNCILAPKRKELPLHTHEMA-CIRCTACAEAC 389 Query: 74 PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF-----EFAT 128 PA + + + ++ CI CG C CP I + E Sbjct: 390 PAS-LLPQQLQWYAKDQDYAKCEEYNLFDCIECGACAYVCP-SEIPLVQYYRQAKSEITA 447 Query: 129 ETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + E ++ RL R+E++ R + D R Sbjct: 448 RKQDEANAERARL-----RFEAKNAR-MERDKAER 476 >gi|29345535|ref|NP_809038.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides thetaiotaomicron VPI-5482] gi|253571682|ref|ZP_04849088.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 1_1_6] gi|29337427|gb|AAO75232.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides thetaiotaomicron VPI-5482] gi|251838890|gb|EES66975.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 1_1_6] Length = 635 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 26/66 (39%), Gaps = 10/66 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L Y E CI C LC CPA AI+ + I KCI CG+C Sbjct: 577 LLTYTINPELCIGCHLCAKNCPADAISGL----------VRKPHVIHPEKCIKCGMCMAR 626 Query: 113 CPVDAI 118 C AI Sbjct: 627 CKFKAI 632 >gi|330830388|ref|YP_004393340.1| ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase [Aeromonas veronii B565] gi|328805524|gb|AEB50723.1| ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase [Aeromonas veronii B565] Length = 1191 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 29/101 (28%), Gaps = 24/101 (23%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR------- 85 T FEK + H + CI C C +CP A+ + + Sbjct: 672 TATSRFEKRDIAREIPIWH--------SDICIQCGNCVFVCPHAALRAKFYHQDWLATAP 723 Query: 86 ---------CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + C CG C +ACPV A Sbjct: 724 EAAQSVPVTAKGFPDSRYTLQLYPEDCTGCGQCVQACPVRA 764 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 8/20 (40%), Positives = 9/20 (45%) Query: 99 DMIKCIYCGLCQEACPVDAI 118 CI CG C CP A+ Sbjct: 690 HSDICIQCGNCVFVCPHAAL 709 >gi|327334732|gb|EGE76443.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL097PA1] Length = 1204 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 20/75 (26%), Gaps = 16/75 (21%) Query: 58 NGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTVRYDIDMI 101 CI C C +CP I + + Sbjct: 693 WEPNACIQCGNCAFVCPHGVIRSKYYPQSQLEGAPESFQSAELNAAGLPESCYTLQVVPD 752 Query: 102 KCIYCGLCQEACPVD 116 +C CGLC EACP Sbjct: 753 QCTGCGLCVEACPAH 767 Score = 34.7 bits (78), Expect = 4.3, Method: Composition-based stats. Identities = 8/19 (42%), Positives = 8/19 (42%) Query: 100 MIKCIYCGLCQEACPVDAI 118 CI CG C CP I Sbjct: 695 PNACIQCGNCAFVCPHGVI 713 >gi|327329119|gb|EGE70879.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL103PA1] Length = 1204 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 20/75 (26%), Gaps = 16/75 (21%) Query: 58 NGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTVRYDIDMI 101 CI C C +CP I + + Sbjct: 693 WEPNACIQCGNCAFVCPHGVIRSKYYPQSQLEGAPESFQSAELNAAGLPESCYTLQVVPD 752 Query: 102 KCIYCGLCQEACPVD 116 +C CGLC EACP Sbjct: 753 QCTGCGLCVEACPAH 767 Score = 34.7 bits (78), Expect = 4.3, Method: Composition-based stats. Identities = 8/19 (42%), Positives = 8/19 (42%) Query: 100 MIKCIYCGLCQEACPVDAI 118 CI CG C CP I Sbjct: 695 PNACIQCGNCAFVCPHGVI 713 >gi|320352154|ref|YP_004193493.1| CoB--CoM heterodisulfide reductase subunit A [Desulfobulbus propionicus DSM 2032] gi|320120656|gb|ADW16202.1| CoB--CoM heterodisulfide reductase subunit A [Desulfobulbus propionicus DSM 2032] Length = 669 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 7/67 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E C C +C +CP AI+++ R I+M C CG+C ACP AI Sbjct: 598 HQEICSGCGICVPLCPYHAISMQPSDNGP-------RARIEMSACKGCGVCTSACPSGAI 650 Query: 119 VEGPNFE 125 V E Sbjct: 651 VLHGYEE 657 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 9/26 (34%), Positives = 12/26 (46%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGP 122 ++ C CG+C CP AI P Sbjct: 596 EVHQEICSGCGICVPLCPYHAISMQP 621 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 33/114 (28%), Gaps = 27/114 (23%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH-------DGTRRTVRYDI 98 F+ + ++ +C C C + CPA+ + + I Sbjct: 227 NFKVKVRRKQTYVDWNKCTGCGDCASKCPAKTPDEFNAGLSDRRAAFIMFPQAVPKKAVI 286 Query: 99 DMIKCIYCGL--------------------CQEACPVDAIVEGPNFEFATETRQ 132 D+ CI C C+ ACP +AI + R+ Sbjct: 287 DIDHCINCAGREIGTQPKSNQKTGRPILAPCERACPAEAINRSLAHDPNGTIRE 340 >gi|315286322|gb|EFU45758.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 110-3] Length = 644 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|315078795|gb|EFT50817.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL053PA2] Length = 1204 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 20/75 (26%), Gaps = 16/75 (21%) Query: 58 NGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTVRYDIDMI 101 CI C C +CP I + + Sbjct: 693 WEPNACIQCGNCAFVCPHGVIRSKYYPQSQLEGAPESFQSAELNAAGLPESCYTLQVVPD 752 Query: 102 KCIYCGLCQEACPVD 116 +C CGLC EACP Sbjct: 753 QCTGCGLCVEACPAH 767 Score = 34.7 bits (78), Expect = 4.3, Method: Composition-based stats. Identities = 8/19 (42%), Positives = 8/19 (42%) Query: 100 MIKCIYCGLCQEACPVDAI 118 CI CG C CP I Sbjct: 695 PNACIQCGNCAFVCPHGVI 713 >gi|314959338|gb|EFT03440.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL002PA1] Length = 1022 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 20/75 (26%), Gaps = 16/75 (21%) Query: 58 NGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTVRYDIDMI 101 CI C C +CP I + + Sbjct: 693 WEPNACIQCGNCAFVCPHGVIRSKYYPQSQLEGAPESFQSAELNAAGLPESCYTLQVVPD 752 Query: 102 KCIYCGLCQEACPVD 116 +C CGLC EACP Sbjct: 753 QCTGCGLCVEACPAH 767 Score = 34.7 bits (78), Expect = 4.3, Method: Composition-based stats. Identities = 8/19 (42%), Positives = 8/19 (42%) Query: 100 MIKCIYCGLCQEACPVDAI 118 CI CG C CP I Sbjct: 695 PNACIQCGNCAFVCPHGVI 713 >gi|314930739|gb|EFS94570.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL067PA1] Length = 1204 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 20/75 (26%), Gaps = 16/75 (21%) Query: 58 NGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTVRYDIDMI 101 CI C C +CP I + + Sbjct: 693 WEPNACIQCGNCAFVCPHGVIRSKYYPQSQLEGAPESFQSAELNAAGLPESCYTLQVVPD 752 Query: 102 KCIYCGLCQEACPVD 116 +C CGLC EACP Sbjct: 753 QCTGCGLCVEACPAH 767 Score = 34.7 bits (78), Expect = 4.3, Method: Composition-based stats. Identities = 8/19 (42%), Positives = 8/19 (42%) Query: 100 MIKCIYCGLCQEACPVDAI 118 CI CG C CP I Sbjct: 695 PNACIQCGNCAFVCPHGVI 713 >gi|314926391|gb|EFS90222.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL036PA3] Length = 1204 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 20/75 (26%), Gaps = 16/75 (21%) Query: 58 NGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTVRYDIDMI 101 CI C C +CP I + + Sbjct: 693 WEPNACIQCGNCAFVCPHGVIRSKYYPQSQLEGAPESFQSAELNAAGLPESCYTLQVVPD 752 Query: 102 KCIYCGLCQEACPVD 116 +C CGLC EACP Sbjct: 753 QCTGCGLCVEACPAH 767 Score = 34.7 bits (78), Expect = 4.3, Method: Composition-based stats. Identities = 8/19 (42%), Positives = 8/19 (42%) Query: 100 MIKCIYCGLCQEACPVDAI 118 CI CG C CP I Sbjct: 695 PNACIQCGNCAFVCPHGVI 713 >gi|313828940|gb|EFS66654.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL063PA2] gi|314922499|gb|EFS86330.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL001PA1] gi|314965576|gb|EFT09675.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL082PA2] gi|314969208|gb|EFT13306.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL037PA1] gi|315094327|gb|EFT66303.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL060PA1] gi|315105051|gb|EFT77027.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL050PA2] gi|315109949|gb|EFT81925.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL030PA2] Length = 1204 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 20/75 (26%), Gaps = 16/75 (21%) Query: 58 NGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTVRYDIDMI 101 CI C C +CP I + + Sbjct: 693 WEPNACIQCGNCAFVCPHGVIRSKYYPQSQLEGAPESFQSAELNAAGLPESCYTLQVVPD 752 Query: 102 KCIYCGLCQEACPVD 116 +C CGLC EACP Sbjct: 753 QCTGCGLCVEACPAH 767 Score = 34.7 bits (78), Expect = 4.3, Method: Composition-based stats. Identities = 8/19 (42%), Positives = 8/19 (42%) Query: 100 MIKCIYCGLCQEACPVDAI 118 CI CG C CP I Sbjct: 695 PNACIQCGNCAFVCPHGVI 713 >gi|313826367|gb|EFS64081.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL063PA1] Length = 1204 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 20/75 (26%), Gaps = 16/75 (21%) Query: 58 NGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTVRYDIDMI 101 CI C C +CP I + + Sbjct: 693 WEPNACIQCGNCAFVCPHGVIRSKYYPQSQLEGAPESFQSAELNAAGLPESCYTLQVVPD 752 Query: 102 KCIYCGLCQEACPVD 116 +C CGLC EACP Sbjct: 753 QCTGCGLCVEACPAH 767 Score = 34.7 bits (78), Expect = 4.3, Method: Composition-based stats. Identities = 8/19 (42%), Positives = 8/19 (42%) Query: 100 MIKCIYCGLCQEACPVDAI 118 CI CG C CP I Sbjct: 695 PNACIQCGNCAFVCPHGVI 713 >gi|313815600|gb|EFS53314.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL059PA1] gi|314916398|gb|EFS80229.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL005PA4] gi|314917238|gb|EFS81069.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL050PA1] gi|314921613|gb|EFS85444.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL050PA3] gi|314955141|gb|EFS99546.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL027PA1] gi|315099590|gb|EFT71566.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL059PA2] gi|315102179|gb|EFT74155.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL046PA1] gi|327454430|gb|EGF01085.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL087PA3] gi|327456497|gb|EGF03152.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL083PA2] gi|328756190|gb|EGF69806.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL087PA1] gi|328758572|gb|EGF72188.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL025PA2] Length = 1204 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 20/75 (26%), Gaps = 16/75 (21%) Query: 58 NGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTVRYDIDMI 101 CI C C +CP I + + Sbjct: 693 WEPNACIQCGNCAFVCPHGVIRSKYYPQSQLEGAPESFQSAELNAAGLPESCYTLQVVPD 752 Query: 102 KCIYCGLCQEACPVD 116 +C CGLC EACP Sbjct: 753 QCTGCGLCVEACPAH 767 Score = 34.7 bits (78), Expect = 4.3, Method: Composition-based stats. Identities = 8/19 (42%), Positives = 8/19 (42%) Query: 100 MIKCIYCGLCQEACPVDAI 118 CI CG C CP I Sbjct: 695 PNACIQCGNCAFVCPHGVI 713 >gi|313814048|gb|EFS51762.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL025PA1] Length = 1204 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 20/75 (26%), Gaps = 16/75 (21%) Query: 58 NGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTVRYDIDMI 101 CI C C +CP I + + Sbjct: 693 WEPNACIQCGNCAFVCPHGVIRSKYYPQSQLEGAPESFQSAELNAAGLPESCYTLQVVPD 752 Query: 102 KCIYCGLCQEACPVD 116 +C CGLC EACP Sbjct: 753 QCTGCGLCVEACPAH 767 Score = 34.7 bits (78), Expect = 4.3, Method: Composition-based stats. Identities = 8/19 (42%), Positives = 8/19 (42%) Query: 100 MIKCIYCGLCQEACPVDAI 118 CI CG C CP I Sbjct: 695 PNACIQCGNCAFVCPHGVI 713 >gi|313764838|gb|EFS36202.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL013PA1] Length = 1204 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 20/75 (26%), Gaps = 16/75 (21%) Query: 58 NGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTVRYDIDMI 101 CI C C +CP I + + Sbjct: 693 WEPNACIQCGNCAFVCPHGVIRSKYYPQSQLEGAPESFQSAELNAAGLPESCYTLQVVPD 752 Query: 102 KCIYCGLCQEACPVD 116 +C CGLC EACP Sbjct: 753 QCTGCGLCVEACPAH 767 Score = 34.7 bits (78), Expect = 4.3, Method: Composition-based stats. Identities = 8/19 (42%), Positives = 8/19 (42%) Query: 100 MIKCIYCGLCQEACPVDAI 118 CI CG C CP I Sbjct: 695 PNACIQCGNCAFVCPHGVI 713 >gi|295110158|emb|CBL24111.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Ruminococcus obeum A2-162] Length = 623 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 10/68 (14%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 ALR++ E CI C C CPA AI+ + Y ID CI CG C++ Sbjct: 563 ALRQFHINPEFCIGCGKCAKNCPAAAIS----------GKIKHPYHIDNELCIKCGTCKD 612 Query: 112 ACPVDAIV 119 C DAI Sbjct: 613 NCNFDAIY 620 Score = 38.9 bits (89), Expect = 0.23, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 15/40 (37%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 I ++ I+ CI CG C + CP AI Sbjct: 550 HIRDKKCRAKVCTALRQFHINPEFCIGCGKCAKNCPAAAI 589 >gi|294056366|ref|YP_003550024.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Coraliomargarita akajimensis DSM 45221] gi|293615699|gb|ADE55854.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Coraliomargarita akajimensis DSM 45221] Length = 1193 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 35/110 (31%), Gaps = 22/110 (20%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIE--------------SGPRCHDGTRRT 93 RG A N + C C C ICP AI + ++ Sbjct: 686 RGMAAEVPVWN-PDLCTQCNKCATICPHAAIRPKFYDKELAQSAPDSFKSMDFNNPAYPD 744 Query: 94 VRYDID--MIKCIYCGLCQEACPV-----DAIVEGPNFEFATETRQELYY 136 +Y I C CG+C E CP A+V P + R+ Y Sbjct: 745 TKYTIQLSPDDCTGCGVCAEMCPGADGDIRALVMQPTGDVVEAEREAYAY 794 >gi|289427517|ref|ZP_06429230.1| pyruvate synthase [Propionibacterium acnes J165] gi|289159447|gb|EFD07638.1| pyruvate synthase [Propionibacterium acnes J165] gi|313807033|gb|EFS45531.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL087PA2] gi|313817818|gb|EFS55532.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL046PA2] gi|313821356|gb|EFS59070.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL036PA1] gi|313824703|gb|EFS62417.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL036PA2] gi|314961510|gb|EFT05611.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL002PA2] gi|314980077|gb|EFT24171.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL072PA2] gi|314986931|gb|EFT31023.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL005PA2] gi|314990576|gb|EFT34667.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL005PA3] gi|315082954|gb|EFT54930.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL027PA2] gi|315086474|gb|EFT58450.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL002PA3] gi|315088188|gb|EFT60164.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL072PA1] gi|327333849|gb|EGE75566.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL096PA3] gi|327444682|gb|EGE91336.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL013PA2] gi|328758187|gb|EGF71803.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL020PA1] gi|332674563|gb|AEE71379.1| pyruvate-flavodoxin oxidoreductase [Propionibacterium acnes 266] Length = 1204 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 20/75 (26%), Gaps = 16/75 (21%) Query: 58 NGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTVRYDIDMI 101 CI C C +CP I + + Sbjct: 693 WEPNACIQCGNCAFVCPHGVIRSKYYPQSQLEGAPESFQSAELNAAGLPESCYTLQVVPD 752 Query: 102 KCIYCGLCQEACPVD 116 +C CGLC EACP Sbjct: 753 QCTGCGLCVEACPAH 767 Score = 34.7 bits (78), Expect = 4.3, Method: Composition-based stats. Identities = 8/19 (42%), Positives = 8/19 (42%) Query: 100 MIKCIYCGLCQEACPVDAI 118 CI CG C CP I Sbjct: 695 PNACIQCGNCAFVCPHGVI 713 >gi|289424274|ref|ZP_06426057.1| pyruvate synthase [Propionibacterium acnes SK187] gi|289154971|gb|EFD03653.1| pyruvate synthase [Propionibacterium acnes SK187] Length = 1204 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 20/75 (26%), Gaps = 16/75 (21%) Query: 58 NGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTVRYDIDMI 101 CI C C +CP I + + Sbjct: 693 WEPNACIQCGNCAFVCPHGVIRSKYYPQSQLEGAPESFQSAELNAAGLPESCYTLQVVPD 752 Query: 102 KCIYCGLCQEACPVD 116 +C CGLC EACP Sbjct: 753 QCTGCGLCVEACPAH 767 Score = 34.7 bits (78), Expect = 4.3, Method: Composition-based stats. Identities = 8/19 (42%), Positives = 8/19 (42%) Query: 100 MIKCIYCGLCQEACPVDAI 118 CI CG C CP I Sbjct: 695 PNACIQCGNCAFVCPHGVI 713 >gi|282853211|ref|ZP_06262548.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes J139] gi|282582664|gb|EFB88044.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes J139] gi|314982738|gb|EFT26830.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL110PA3] gi|315091392|gb|EFT63368.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL110PA4] Length = 1204 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 20/75 (26%), Gaps = 16/75 (21%) Query: 58 NGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTVRYDIDMI 101 CI C C +CP I + + Sbjct: 693 WEPNACIQCGNCAFVCPHGVIRSKYYPQSQLESAPESFQSAELNAAGLPESCYTLQVVPD 752 Query: 102 KCIYCGLCQEACPVD 116 +C CGLC EACP Sbjct: 753 QCTGCGLCVEACPAH 767 Score = 34.7 bits (78), Expect = 4.3, Method: Composition-based stats. Identities = 8/19 (42%), Positives = 8/19 (42%) Query: 100 MIKCIYCGLCQEACPVDAI 118 CI CG C CP I Sbjct: 695 PNACIQCGNCAFVCPHGVI 713 >gi|237731408|ref|ZP_04561889.1| electron transport complex protein RnfB [Citrobacter sp. 30_2] gi|226906947|gb|EEH92865.1| electron transport complex protein RnfB [Citrobacter sp. 30_2] Length = 169 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI + + + C C LC + CP I Sbjct: 90 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTQCI 139 Query: 119 VEGPNFEFATETRQEL 134 P E + +L Sbjct: 140 ELRPVAETPDSWKWDL 155 Score = 35.1 bits (79), Expect = 3.3, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C C +ACPVDAI Sbjct: 89 IDENNCIGCTKCIQACPVDAI 109 >gi|295129727|ref|YP_003580390.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes SK137] gi|291376756|gb|ADE00611.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes SK137] gi|313772691|gb|EFS38657.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL074PA1] gi|313811172|gb|EFS48886.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL083PA1] gi|313832173|gb|EFS69887.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL007PA1] gi|313834334|gb|EFS72048.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL056PA1] gi|313839447|gb|EFS77161.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL086PA1] gi|314974431|gb|EFT18526.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL053PA1] gi|314977380|gb|EFT21475.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL045PA1] gi|314985427|gb|EFT29519.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL005PA1] gi|315097262|gb|EFT69238.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL038PA1] gi|327331223|gb|EGE72962.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL096PA2] gi|327447404|gb|EGE94058.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL043PA1] gi|327450411|gb|EGE97065.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL043PA2] gi|328759537|gb|EGF73143.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL099PA1] Length = 1204 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 20/75 (26%), Gaps = 16/75 (21%) Query: 58 NGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTVRYDIDMI 101 CI C C +CP I + + Sbjct: 693 WEPNACIQCGNCAFVCPHGVIRSKYYPQSQLEGAPESFQSAELNAAGLPESCYTLQVVPD 752 Query: 102 KCIYCGLCQEACPVD 116 +C CGLC EACP Sbjct: 753 QCTGCGLCVEACPAH 767 Score = 34.7 bits (78), Expect = 4.3, Method: Composition-based stats. Identities = 8/19 (42%), Positives = 8/19 (42%) Query: 100 MIKCIYCGLCQEACPVDAI 118 CI CG C CP I Sbjct: 695 PNACIQCGNCAFVCPHGVI 713 >gi|153932223|ref|YP_001385620.1| [Fe] hydrogenase [Clostridium botulinum A str. ATCC 19397] gi|153936790|ref|YP_001389026.1| [Fe] hydrogenase [Clostridium botulinum A str. Hall] gi|152928267|gb|ABS33767.1| [Fe] hydrogenase [Clostridium botulinum A str. ATCC 19397] gi|152932704|gb|ABS38203.1| [Fe] hydrogenase [Clostridium botulinum A str. Hall] Length = 497 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 7/69 (10%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIKCIYCGLC 109 + +C C LC+ +CP AI P R I+ CI CG C Sbjct: 135 YIDQNKCRECGLCKKVCPYNAIVEVMRPCKKVCPTGALEINPDDKRAMIEKENCINCGAC 194 Query: 110 QEACPVDAI 118 ACP AI Sbjct: 195 MAACPFGAI 203 >gi|150398828|ref|YP_001322595.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanococcus vannielii SB] gi|150011531|gb|ABR53983.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus vannielii SB] Length = 397 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 27/66 (40%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 EE+C+ C C CP +AI + + ++ CI CG C + CP A Sbjct: 265 WDEEKCVYCGPCAIKCPNKAIAVVNPKGLEIPSKLKTEKQNQFRMCIRCGACVQICPTGA 324 Query: 118 IVEGPN 123 + G Sbjct: 325 LRLGKI 330 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 1/60 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ CI C +C CP AI +G + ++ +++D+D CI CG C + CP + I Sbjct: 160 DKKSCIYCSICAQTCPWNAIF-VAGKKSPKRDKKIIKFDVDDELCIGCGDCTDKCPRNLI 218 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 3/65 (4%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 N CI C C ICP A+ + + + + R + C CG C E CP D Sbjct: 304 QNQFRMCIRCGACVQICPTGALRL---GKINHKGKDYDRIEFSPSLCNNCGKCIETCPYD 360 Query: 117 AIVEG 121 + Sbjct: 361 ILKLT 365 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 3/76 (3%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID-MIKCIYCGLCQEACPVDAIVE 120 C+ C C ICP + +E + I C+ CG+C CPV +I Sbjct: 93 FCVGCTKCVDICPDDYVGMEGIIEPAKRNFVIPKEPIVVTDTCVGCGICVPECPVASISL 152 Query: 121 GPNFEFATETRQELYY 136 E A ++ Y Sbjct: 153 EN--EKAVVDKKSCIY 166 Score = 38.5 bits (88), Expect = 0.29, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 3/57 (5%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 N + C C C ++CP A+ + ++ + + KC CG C + CP Sbjct: 27 NPLKVCQLCGKCTSVCPNDALHLRE---IELSGKKIKQIEYKPTKCNLCGECVKVCP 80 Score = 35.1 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 13/91 (14%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + ++ +E CI C C + + I C CGLC Sbjct: 191 KKIIKFDVDDELCIGCGDC------------TDKCPRNLIVVKDMVAIPPKGCPACGLCV 238 Query: 111 EACPVDAIVEGPNFEFATE-TRQELYYDKER 140 CPVDA+ + A T + + +D+E+ Sbjct: 239 STCPVDAVDLKVEYGQAKPATSEGIIWDEEK 269 >gi|2340933|emb|CAA74952.1| hypothetical protein [Methanosarcina mazei] Length = 190 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 8/69 (11%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 Y ++C C+ C E+ P + V ID++KC CG+C+E C Sbjct: 95 MPYNIDRKQCKHCETC--------PPRENCPHEAISEKNGVTDQIDLLKCKGCGICKELC 146 Query: 114 PVDAIVEGP 122 P +AI GP Sbjct: 147 PYNAIKGGP 155 >gi|50841650|ref|YP_054877.1| pyruvate-flavodoxin oxidoreductase [Propionibacterium acnes KPA171202] gi|50839252|gb|AAT81919.1| pyruvate-flavodoxin oxidoreductase [Propionibacterium acnes KPA171202] gi|313792725|gb|EFS40806.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL110PA1] gi|313803389|gb|EFS44571.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL110PA2] gi|314964099|gb|EFT08199.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL082PA1] gi|315081730|gb|EFT53706.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL078PA1] gi|315107546|gb|EFT79522.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL030PA1] gi|327457234|gb|EGF03889.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Propionibacterium acnes HL092PA1] Length = 1204 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 20/75 (26%), Gaps = 16/75 (21%) Query: 58 NGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTVRYDIDMI 101 CI C C +CP I + + Sbjct: 693 WEPNACIQCGNCAFVCPHGVIRSKYYPQSQLEGAPESFQSAELNAAGLPESCYTLQVVPD 752 Query: 102 KCIYCGLCQEACPVD 116 +C CGLC EACP Sbjct: 753 QCTGCGLCVEACPAH 767 Score = 34.7 bits (78), Expect = 4.3, Method: Composition-based stats. Identities = 8/19 (42%), Positives = 8/19 (42%) Query: 100 MIKCIYCGLCQEACPVDAI 118 CI CG C CP I Sbjct: 695 PNACIQCGNCAFVCPHGVI 713 >gi|62289276|ref|YP_221069.1| dihydropyrimidine dehydrogenase [Brucella abortus bv. 1 str. 9-941] gi|82699207|ref|YP_413781.1| dihydropyrimidine dehydrogenase [Brucella melitensis biovar Abortus 2308] gi|189023530|ref|YP_001934298.1| dihydropyrimidine dehydrogenase [Brucella abortus S19] gi|237814768|ref|ZP_04593766.1| dihydroorotate dehydrogenase family protein [Brucella abortus str. 2308 A] gi|254696719|ref|ZP_05158547.1| dihydropyrimidine dehydrogenase [Brucella abortus bv. 2 str. 86/8/59] gi|254729629|ref|ZP_05188207.1| dihydropyrimidine dehydrogenase [Brucella abortus bv. 4 str. 292] gi|256060433|ref|ZP_05450604.1| dihydropyrimidine dehydrogenase [Brucella neotomae 5K33] gi|256256844|ref|ZP_05462380.1| dihydropyrimidine dehydrogenase [Brucella abortus bv. 9 str. C68] gi|260545967|ref|ZP_05821708.1| dihydropyrimidine dehydrogenase [Brucella abortus NCTC 8038] gi|260757288|ref|ZP_05869636.1| dihydropyrimidine dehydrogenase [Brucella abortus bv. 4 str. 292] gi|260761110|ref|ZP_05873453.1| dihydropyrimidine dehydrogenase [Brucella abortus bv. 2 str. 86/8/59] gi|260883093|ref|ZP_05894707.1| dihydropyrimidine dehydrogenase [Brucella abortus bv. 9 str. C68] gi|261324422|ref|ZP_05963619.1| dihydropyrimidine dehydrogenase [Brucella neotomae 5K33] gi|297247693|ref|ZP_06931411.1| dihydropyrimidine dehydrogenase (NADP+) [Brucella abortus bv. 5 str. B3196] gi|62195408|gb|AAX73708.1| dihydroorotate dehydrogenase family protein [Brucella abortus bv. 1 str. 9-941] gi|82615308|emb|CAJ10269.1| Legume lectin, beta domain:Dihydroorotate dehydrogenase:4Fe-4S ferredoxin, iron-sulfur binding domain:FMN/related compound-bi [Brucella melitensis biovar Abortus 2308] gi|189019102|gb|ACD71824.1| dihydropyrimidine dehydrogenase [Brucella abortus S19] gi|237789605|gb|EEP63815.1| dihydroorotate dehydrogenase family protein [Brucella abortus str. 2308 A] gi|260097374|gb|EEW81249.1| dihydropyrimidine dehydrogenase [Brucella abortus NCTC 8038] gi|260667606|gb|EEX54546.1| dihydropyrimidine dehydrogenase [Brucella abortus bv. 4 str. 292] gi|260671542|gb|EEX58363.1| dihydropyrimidine dehydrogenase [Brucella abortus bv. 2 str. 86/8/59] gi|260872621|gb|EEX79690.1| dihydropyrimidine dehydrogenase [Brucella abortus bv. 9 str. C68] gi|261300402|gb|EEY03899.1| dihydropyrimidine dehydrogenase [Brucella neotomae 5K33] gi|297174862|gb|EFH34209.1| dihydropyrimidine dehydrogenase (NADP+) [Brucella abortus bv. 5 str. B3196] Length = 436 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 6/79 (7%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI C C A S +++ +C+ Sbjct: 330 QYLNLNYVTKARINQDLCIQCGRCHI-----ACEDTSHQAITAMVNGARHFEVIDEECVG 384 Query: 106 CGLCQEACPV-DAIVEGPN 123 C LC CPV + I Sbjct: 385 CNLCVNVCPVENCITMEQI 403 >gi|317125325|ref|YP_004099437.1| formate dehydrogenase subunit alpha [Intrasporangium calvum DSM 43043] gi|315589413|gb|ADU48710.1| formate dehydrogenase alpha subunit [Intrasporangium calvum DSM 43043] Length = 947 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 26/81 (32%), Gaps = 3/81 (3%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + + CI C C C T G +C+ CG C + Sbjct: 167 YFAYDPKACIVCSRCVRACAEVQGTFALTVEGRGFDSRITAGGAPSFLESECVSCGACVQ 226 Query: 112 ACPVDAIVEGPNFEFATETRQ 132 ACP DA+ E E TR Sbjct: 227 ACPTDALTEKSVIELGMPTRS 247 >gi|301647804|ref|ZP_07247591.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 146-1] gi|301074064|gb|EFK88870.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 146-1] Length = 665 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 264 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 321 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 322 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 370 >gi|254718477|ref|ZP_05180288.1| dihydropyrimidine dehydrogenase [Brucella sp. 83/13] gi|265983446|ref|ZP_06096181.1| dihydropyrimidine dehydrogenase [Brucella sp. 83/13] gi|306838284|ref|ZP_07471130.1| dihydroorotate dehydrogenase family protein [Brucella sp. NF 2653] gi|264662038|gb|EEZ32299.1| dihydropyrimidine dehydrogenase [Brucella sp. 83/13] gi|306406575|gb|EFM62808.1| dihydroorotate dehydrogenase family protein [Brucella sp. NF 2653] Length = 436 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 6/79 (7%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI C C A S +++ +C+ Sbjct: 330 QYLNLNYVTKARINQDLCIQCGRCHI-----ACEDTSHQAITAMVNGARHFEVIDEECVG 384 Query: 106 CGLCQEACPV-DAIVEGPN 123 C LC CPV + I Sbjct: 385 CNLCVNVCPVENCITMEQI 403 >gi|239628768|ref|ZP_04671799.1| nitroreductase family protein fused to ferredoxin domain [Clostridiales bacterium 1_7_47_FAA] gi|239518914|gb|EEQ58780.1| nitroreductase family protein fused to ferredoxin domain [Clostridiales bacterium 1_7_47FAA] Length = 277 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 15/76 (19%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ CI C C A C A +++IE G C+ CG C CPV A+ Sbjct: 22 DKDACIGCGRCVADCIANSLSIEDNKAQSSGN------------CLLCGHCVAVCPVSAV 69 Query: 119 VEGPNFEFATETRQEL 134 P ++ E +EL Sbjct: 70 SI-PEYDM--EDVEEL 82 >gi|167622602|ref|YP_001672896.1| formate dehydrogenase subunit alpha [Shewanella halifaxensis HAW-EB4] gi|167352624|gb|ABZ75237.1| formate dehydrogenase, alpha subunit [Shewanella halifaxensis HAW-EB4] Length = 1457 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 27/98 (27%), Gaps = 15/98 (15%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT----- 90 P +F + + RCI+C C IC + + Sbjct: 629 VPQSPVDAPRQFSVDDSSPFITFDANRCISCGACVDICHNKCGHSAISFESENHYQVLPD 688 Query: 91 ----------RRTVRYDIDMIKCIYCGLCQEACPVDAI 118 R + C+ CG C + CP A+ Sbjct: 689 SSLSPERRAPRVGFNVTMRDSDCVQCGSCIQVCPTGAL 726 >gi|163814469|ref|ZP_02205858.1| hypothetical protein COPEUT_00620 [Coprococcus eutactus ATCC 27759] gi|158450104|gb|EDP27099.1| hypothetical protein COPEUT_00620 [Coprococcus eutactus ATCC 27759] Length = 286 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 27/74 (36%), Gaps = 11/74 (14%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 G E CI C +C C AIT+ G +D KC Sbjct: 147 ENDVGIKGAMVVEWDEPSCIMCGVCVKACREGAITMADGKII-----------LDTDKCN 195 Query: 105 YCGLCQEACPVDAI 118 YCG C +ACP DA Sbjct: 196 YCGRCAKACPTDAW 209 Score = 34.3 bits (77), Expect = 5.9, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 16/48 (33%), Gaps = 3/48 (6%) Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C + E G D CI CG+C +AC AI Sbjct: 138 CQNNCLKAEENDVGIKGAMVVEW---DEPSCIMCGVCVKACREGAITM 182 >gi|153941131|ref|YP_001391108.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum F str. Langeland] gi|152937027|gb|ABS42525.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum F str. Langeland] gi|295319154|gb|ADF99531.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum F str. 230613] Length = 631 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 10/63 (15%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 + ++CI C C CP I + ++ I+ KCI CG C ACPV Sbjct: 576 HYEITDKCIGCTKCARGCPVSCIIG----------KVKEKHFINQEKCIKCGNCYSACPV 625 Query: 116 DAI 118 AI Sbjct: 626 GAI 628 Score = 37.8 bits (86), Expect = 0.51, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 17/39 (43%) Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + RC GT + + + KCI C C CPV I Sbjct: 560 HVNEKRCPSGTCKNLLHYEITDKCIGCTKCARGCPVSCI 598 >gi|90110038|sp|Q53046|NIFJ_RHORT RecName: Full=Pyruvate-flavodoxin oxidoreductase Length = 1191 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 30/101 (29%), Gaps = 20/101 (19%) Query: 31 KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------------- 77 +P E R + + CI C C +CP A Sbjct: 667 PVDGTWPTETARWEKRDIAQQVCSWDAD---LCIQCNKCVMVCPHAALRVKAVPAEAAAA 723 Query: 78 --ITIESGPRCHDGTRRTVRYDI--DMIKCIYCGLCQEACP 114 ++ S P + Y + C CG+C EACP Sbjct: 724 LPASMNSTPYKGKDDLKGSAYVLALSPEDCTGCGICVEACP 764 >gi|83593733|ref|YP_427485.1| pyruvate-ferredoxin (flavodoxin) oxidoreductase [Rhodospirillum rubrum ATCC 11170] gi|83576647|gb|ABC23198.1| Pyruvate-ferredoxin (flavodoxin) oxidoreductase [Rhodospirillum rubrum ATCC 11170] Length = 1186 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 30/101 (29%), Gaps = 20/101 (19%) Query: 31 KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------------- 77 +P E R + + CI C C +CP A Sbjct: 662 PVDGTWPTETARWEKRDIAQQVCSWDAD---LCIQCNKCVMVCPHAALRVKAVPAEAAAA 718 Query: 78 --ITIESGPRCHDGTRRTVRYDI--DMIKCIYCGLCQEACP 114 ++ S P + Y + C CG+C EACP Sbjct: 719 LPASMNSTPYKGKDDLKGSAYVLALSPEDCTGCGICVEACP 759 >gi|453436|emb|CAA54651.1| pyruvate oxidoreductase [Rhodospirillum rubrum] Length = 1191 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/101 (20%), Positives = 30/101 (29%), Gaps = 20/101 (19%) Query: 31 KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------------- 77 +P E R + + CI C C +CP A Sbjct: 667 PVDGTWPTETARWEKRDIAQQVCSWDAD---LCIQCNKCVMVCPHAALRVKAVPAEAAAA 723 Query: 78 --ITIESGPRCHDGTRRTVRYDI--DMIKCIYCGLCQEACP 114 ++ S P + Y + C CG+C EACP Sbjct: 724 LPASMNSTPYKGKDDLKGSAYVLALSPEDCTGCGICVEACP 764 >gi|326790680|ref|YP_004308501.1| hydrogenase, Fe-only [Clostridium lentocellum DSM 5427] gi|326541444|gb|ADZ83303.1| hydrogenase, Fe-only [Clostridium lentocellum DSM 5427] Length = 562 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 3/68 (4%) Query: 59 GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQEACPV 115 E +CI C C +C Q I R + + I KC+ CG C CP Sbjct: 143 DESKCILCGDCVRMCDEMQNIGAIDFAHRGTNMRISTAFHKPISESKCVSCGQCAAVCPT 202 Query: 116 DAIVEGPN 123 AIV + Sbjct: 203 GAIVVKND 210 >gi|295695743|ref|YP_003588981.1| formate dehydrogenase, alpha subunit [Bacillus tusciae DSM 2912] gi|295411345|gb|ADG05837.1| formate dehydrogenase, alpha subunit [Bacillus tusciae DSM 2912] Length = 991 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---YDIDMIKCIYCGLCQE 111 Y +CI C C C + R V ID C+ CG C Sbjct: 150 FYRYDPNQCILCGRCVEACQNLQVNETLSIDWSLERPRVVWDGGVPIDQSSCVSCGHCVT 209 Query: 112 ACPVDAIVE 120 CP +A++E Sbjct: 210 VCPCNALME 218 Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 24/75 (32%), Gaps = 9/75 (12%) Query: 48 RGEHALRRYPNGEERCIAC----KLCEAI-----CPAQAITIESGPRCHDGTRRTVRYDI 98 R E R N E C C C Q P+ +D Y Sbjct: 94 RLEAVDRILVNHELYCTVCDNNNGNCVVHNTVKQLGVQHQREPFSPKPYDVDDTNPFYRY 153 Query: 99 DMIKCIYCGLCQEAC 113 D +CI CG C EAC Sbjct: 154 DPNQCILCGRCVEAC 168 >gi|227885955|ref|ZP_04003760.1| electron transport complex protein RnfC [Escherichia coli 83972] gi|227837047|gb|EEJ47513.1| electron transport complex protein RnfC [Escherichia coli 83972] Length = 616 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|325261134|ref|ZP_08127872.1| pyridine nucleotide-disulfide oxidoreductase/rhodanese domain protein [Clostridium sp. D5] gi|324032588|gb|EGB93865.1| pyridine nucleotide-disulfide oxidoreductase/rhodanese domain protein [Clostridium sp. D5] Length = 860 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 32/127 (25%), Gaps = 24/127 (18%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P G R E+C C C+ + + Sbjct: 690 CPNNCVKPDLNDLGIIGQRVPQIDFEKCRGCGTCQ--VVEGCPIKIAELADG-------K 740 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRN 155 ID KC +CG C CP I T Y G RW ++ + Sbjct: 741 ILIDDDKCNHCGRCVGKCPFKVIE--------KYTNGYRVY-------IGGRWGKKVAQG 785 Query: 156 IVTDSPY 162 D + Sbjct: 786 QYLDKVF 792 >gi|257467927|ref|ZP_05632023.1| nitroreductase family protein fused to ferredoxin domain [Fusobacterium ulcerans ATCC 49185] gi|317062215|ref|ZP_07926700.1| nitroreductase [Fusobacterium ulcerans ATCC 49185] gi|313687891|gb|EFS24726.1| nitroreductase [Fusobacterium ulcerans ATCC 49185] Length = 266 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 36/90 (40%), Gaps = 14/90 (15%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 +E+CI C+ C C + + +E+G G +C+ CG C CP Sbjct: 1 MVSIDKEKCIGCRACVEDCFPENLFLENGKAEIKG------------RCMQCGHCIAVCP 48 Query: 115 VDAIVEG--PNFEFATETRQELYYDKERLL 142 V+A+ P ++E ERLL Sbjct: 49 VNAVSITNYPKEGIEEYNKEEFNISPERLL 78 >gi|170024152|ref|YP_001720657.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [Yersinia pseudotuberculosis YPIII] gi|169750686|gb|ACA68204.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Yersinia pseudotuberculosis YPIII] Length = 1177 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 34/138 (24%), Gaps = 36/138 (26%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A + C C C A C Sbjct: 646 MLAGLGDTL------PVSAFPPDGTWPVGTTQWEKRNIAENIPIWQPDLCTQCNHCVAAC 699 Query: 74 PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 P A +++ R G + + C C LC E CP Sbjct: 700 PHSAIRAKVVQPEAMAGAPDSLQSLDVKARDMRGQKY--VLQVAPEDCTGCNLCYEVCPA 757 Query: 116 --------DAIVEGPNFE 125 AI P+ E Sbjct: 758 KDRQNPEIKAINMRPHLE 775 >gi|134046812|ref|YP_001098297.1| ferredoxin [Methanococcus maripaludis C5] gi|132664437|gb|ABO36083.1| membrane-bound hydrogenase subunit ehbL [Methanococcus maripaludis C5] Length = 170 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 7/86 (8%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTV--RYDIDMIKCIYCGLCQEACPVDAIV- 119 CI C C+ CP +AI + + ID KC+YC C + CPV A+ Sbjct: 52 CIGCGGCKNACPTKAIEMMPVEPVKITETYSKEAVPKIDYDKCVYCLYCHDFCPVFALFN 111 Query: 120 -EGPNFEFATETRQELY-YDKERLLN 143 P ++L D +LL Sbjct: 112 EISPIHPRHVG--EDLVQVDLSKLLE 135 >gi|118444478|ref|YP_878332.1| hydrogenase [Clostridium novyi NT] gi|118134934|gb|ABK61978.1| hydrogenase [Clostridium novyi NT] Length = 579 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 3/70 (4%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPV 115 +CI C C C + T + +G+ + D +D C+ CG C CPV Sbjct: 149 DRHKCIKCGRCAVTCKNKTNTQAILLKMINGSFKVKTTDDKSLDETNCLLCGQCVNICPV 208 Query: 116 DAIVEGPNFE 125 A+ E P+ + Sbjct: 209 AALSETPHID 218 >gi|73749235|ref|YP_308474.1| putative reductive dehalogenase [Dehalococcoides sp. CBDB1] gi|289433210|ref|YP_003463083.1| reductive dehalogenase [Dehalococcoides sp. GT] gi|73660951|emb|CAI83558.1| putative reductive dehalogenase [Dehalococcoides sp. CBDB1] gi|288946930|gb|ADC74627.1| reductive dehalogenase [Dehalococcoides sp. GT] Length = 495 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 3/74 (4%) Query: 56 YPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + C C +C CP AI R + + D+ C +C +CQ Sbjct: 375 DFGARKFCETCGICADSCPQGAIQQGEATWDARYAWENSGYLGWRNDLTLCNHCPVCQGV 434 Query: 113 CPVDAIVEGPNFEF 126 CP +A + E Sbjct: 435 CPFNAFDKSGIHEI 448 >gi|331085360|ref|ZP_08334446.1| hypothetical protein HMPREF0987_00749 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408143|gb|EGG87633.1| hypothetical protein HMPREF0987_00749 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 594 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 11/78 (14%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G + ++ C C C C +AI++ I CI+CG Sbjct: 9 GVNGMKVIDFQNASCKHCYKCVRNCSVKAISVRHEQAH-----------IMNDHCIHCGK 57 Query: 109 CQEACPVDAIVEGPNFEF 126 C E CP +A + E Sbjct: 58 CLEVCPQNAKRFASDLEL 75 >gi|323484611|ref|ZP_08089974.1| hypothetical protein HMPREF9474_01725 [Clostridium symbiosum WAL-14163] gi|323402072|gb|EGA94407.1| hypothetical protein HMPREF9474_01725 [Clostridium symbiosum WAL-14163] Length = 428 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 6/57 (10%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 +++C AC CE +C AI + +I+ C+ CG C CP Sbjct: 5 CDKDKCTACGACENLCTQNAIYRQENIDGSW------HMEINEKMCVNCGRCSNVCP 55 >gi|315182318|gb|ADT89231.1| hypothetical formate dehydrogenase, alphasubunit [Vibrio furnissii NCTC 11218] Length = 1376 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 7/64 (10%) Query: 59 GEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 RCI+C C C A+ T+ D C+ CG C + CP Sbjct: 613 DANRCISCGACVQTCQEETVHGALHFSHSQNRPMFHDGTLMGD---SNCVQCGACVQVCP 669 Query: 115 VDAI 118 A+ Sbjct: 670 TGAL 673 >gi|260596726|ref|YP_003209297.1| putative formate dehydrogenase yrhE [Cronobacter turicensis z3032] gi|260215903|emb|CBA28461.1| Putative formate dehydrogenase yrhE [Cronobacter turicensis z3032] Length = 990 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 31/91 (34%), Gaps = 4/91 (4%) Query: 34 INYPFEKGST-SPRFRGEHALRRYPNGEERCIACKLCEAICP---AQAITIESGPRCHDG 89 ++ P ++ + +H+ Y ++CI C C C H Sbjct: 119 MHIPIQRYEYQRKPYVKDHSNPFYTYDPDQCILCGRCVEACQNVEVNETLSIDYTMAHPR 178 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 I C+ CG C CP +A++E Sbjct: 179 VLWDGGDTIAGSSCVSCGHCVTVCPCNALIE 209 Score = 37.8 bits (86), Expect = 0.47, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 21/62 (33%), Gaps = 11/62 (17%) Query: 62 RCIAC----KLCEAICPAQAITIESGPRCHDGTRRTVR------YDIDMIKCIYCGLCQE 111 C C C + A A R + V+ Y D +CI CG C E Sbjct: 99 YCTVCEHNTGDC-TLHNAVADMHIPIQRYEYQRKPYVKDHSNPFYTYDPDQCILCGRCVE 157 Query: 112 AC 113 AC Sbjct: 158 AC 159 >gi|239815128|ref|YP_002944038.1| electron transport complex, RnfABCDGE type, subunit beta [Variovorax paradoxus S110] gi|239801705|gb|ACS18772.1| electron transport complex, RnfABCDGE type, B subunit [Variovorax paradoxus S110] Length = 214 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 27/82 (32%), Gaps = 10/82 (12%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E P+F E E CI C LC CP AI + + + Sbjct: 60 EPLPLDPQFGTEGPRAMAVIDEAWCIGCTLCLDACPTDAIVGINK----------RMHTV 109 Query: 99 DMIKCIYCGLCQEACPVDAIVE 120 C C LC CPVD I Sbjct: 110 IEAHCTGCELCIPVCPVDCISL 131 >gi|170759324|ref|YP_001787173.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum A3 str. Loch Maree] gi|169406313|gb|ACA54724.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum A3 str. Loch Maree] Length = 631 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 10/63 (15%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 + ++CI C C CP I + ++ I+ KCI CG C ACPV Sbjct: 576 HYEITDKCIGCTKCARGCPVSCIIG----------KVKEKHFINQEKCIKCGNCYSACPV 625 Query: 116 DAI 118 AI Sbjct: 626 GAI 628 Score = 37.8 bits (86), Expect = 0.52, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 17/39 (43%) Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + RC GT + + + KCI C C CPV I Sbjct: 560 HVNEKRCPSGTCKNLLHYEITDKCIGCTKCARGCPVSCI 598 >gi|168180426|ref|ZP_02615090.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum NCTC 2916] gi|226949092|ref|YP_002804183.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum A2 str. Kyoto] gi|182668703|gb|EDT80681.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum NCTC 2916] gi|226842684|gb|ACO85350.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum A2 str. Kyoto] Length = 631 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 10/63 (15%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 + ++CI C C CP I + ++ I+ KCI CG C ACPV Sbjct: 576 HYEITDKCIGCTKCARGCPVSCIIG----------KVKEKHFINQEKCIKCGNCYSACPV 625 Query: 116 DAI 118 AI Sbjct: 626 GAI 628 Score = 37.8 bits (86), Expect = 0.52, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 17/39 (43%) Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + RC GT + + + KCI C C CPV I Sbjct: 560 HVNEKRCPSGTCKNLLHYEITDKCIGCTKCARGCPVSCI 598 >gi|297620127|ref|YP_003708232.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanococcus voltae A3] gi|297379104|gb|ADI37259.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus voltae A3] Length = 253 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 43/94 (45%), Gaps = 12/94 (12%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 K P + L ++ ++CI C +CE C +AI +E + V DI+ Sbjct: 114 KIEEMPVEHRKIKLIKHNLDMDKCIKCAICERFCAPKAIKVE----------KKVSIDIN 163 Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 C+ C C++ CPV+AI ++E + ++ Sbjct: 164 EDLCMGCTACEKVCPVNAIKV--DYELSDIKFED 195 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 9/88 (10%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + ++C+ C+LC CP AI + I KCI C +C + C Sbjct: 40 KNLYIQPKKCVHCELCLEACPVDAIEKPNLKNSA---------KIIPEKCIKCEICAKTC 90 Query: 114 PVDAIVEGPNFEFATETRQELYYDKERL 141 PV AI F ET++ + Y E + Sbjct: 91 PVGAIEVLNGEAFLDETKENVIYKIEEM 118 Score = 41.2 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 12/60 (20%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++CI C +C +CP AIT + + ID KC++CG+C++ CPV AI Sbjct: 200 ETDKCIDCMVCHDLCPVSAITYDG------------KIIIDNEKCVHCGICEKNCPVSAI 247 Score = 40.1 bits (92), Expect = 0.095, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ C+ C CE +CP AI ++ + + ++ KCI C +C + CPV AI Sbjct: 163 NEDLCMGCTACEKVCPVNAIKVDYELSD---IKFEDEFVVETDKCIDCMVCHDLCPVSAI 219 >gi|90414012|ref|ZP_01221996.1| hypothetical protein P3TCK_06747 [Photobacterium profundum 3TCK] gi|90324934|gb|EAS41455.1| hypothetical protein P3TCK_06747 [Photobacterium profundum 3TCK] Length = 205 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 24/119 (20%), Positives = 38/119 (31%), Gaps = 11/119 (9%) Query: 12 FLKEFVGAFFLC--------LRYFFKAKTTINYPFEKGST-SPRFRGEHALRRYPNGEER 62 FL + +L + + K + R AL ++ Sbjct: 6 FLYRIFKSLWLTAIAAVPYGIGRMLMPEKNQLASLNKSQLNHDKLRPPGALNDDIAFKKA 65 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 CI C LC +CP I ++ + + CI CG C E CP +A+ Sbjct: 66 CIGCSLCAEVCPPACIQFYHLDGANNANTPYIEPALRA--CILCGKCMEVCPTNALTVT 122 Score = 37.8 bits (86), Expect = 0.50, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 31/73 (42%), Gaps = 9/73 (12%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVR--YDIDMIKCIYCGLCQEACP--VDAI 118 CI C C +CP A+T+ + + G + R + + I CG C CP AI Sbjct: 104 CILCGKCMEVCPTNALTVTETRKVNMGRAQIERLACYPWVDRGI-CGACVSICPLGETAI 162 Query: 119 VEGPNFEFATETR 131 FEFA R Sbjct: 163 S----FEFANMYR 171 >gi|238790208|ref|ZP_04633984.1| Electron transport complex protein rnfB [Yersinia frederiksenii ATCC 33641] gi|238721746|gb|EEQ13410.1| Electron transport complex protein rnfB [Yersinia frederiksenii ATCC 33641] Length = 207 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 24/78 (30%), Gaps = 10/78 (12%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C C CP AI + + + C C LC CP D Sbjct: 111 FIDEANCIGCTKCIQACPVDAIVGAT----------RAMHTVLPDLCTGCDLCVAPCPTD 160 Query: 117 AIVEGPNFEFATETRQEL 134 I P + +L Sbjct: 161 CIEMIPVATTTANWKWDL 178 >gi|333018895|gb|EGK38188.1| electron transport complex protein rnfC [Shigella flexneri K-227] Length = 644 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 35/109 (32%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CP + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPVD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|333005861|gb|EGK25377.1| electron transport complex protein rnfC [Shigella flexneri K-272] Length = 620 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 35/109 (32%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CP + + G + ++ CI CG C CP Sbjct: 347 PQEEQSCIRCSACADACPVD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 404 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 405 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 453 >gi|333005285|gb|EGK24805.1| electron transport complex protein rnfC [Shigella flexneri VA-6] Length = 708 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 35/109 (32%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CP + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPVD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|317133139|ref|YP_004092453.1| hypothetical protein Ethha_2205 [Ethanoligenens harbinense YUAN-3] gi|315471118|gb|ADU27722.1| hypothetical protein Ethha_2205 [Ethanoligenens harbinense YUAN-3] Length = 379 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 33/111 (29%), Gaps = 15/111 (13%) Query: 15 EFVGAFFLCLRYFFKAKTTINYPF-EKGSTSPRFRGEHAL---RRYPNGEERCIACKLCE 70 E VG L F+ + + F E R R +CI C C Sbjct: 272 EIVGERAETLLTLFEKPDSASLDFMENIRVPAFLRKPLKKLLTPRPVIVRSKCIGCGKCA 331 Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 CP I IE I CI C C E CPV AI Sbjct: 332 ESCPRHVIRIEQKKAH-----------IAYTDCIRCFCCHEMCPVKAIDIH 371 >gi|257486634|ref|ZP_05640675.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 211 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 10/75 (13%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 RG + E CI C C CP AI + + + + + +C C Sbjct: 76 RGAAPAQVAFIREAECIGCTKCIQACPVDAIVGAAK----------LMHTVIVDECTGCD 125 Query: 108 LCQEACPVDAIVEGP 122 LC CPVD I P Sbjct: 126 LCVAPCPVDCIEMHP 140 >gi|149190373|ref|ZP_01868645.1| electron transport complex protein RnfC [Vibrio shilonii AK1] gi|148835752|gb|EDL52717.1| electron transport complex protein RnfC [Vibrio shilonii AK1] Length = 934 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 34/101 (33%), Gaps = 3/101 (2%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C C CPA + + ++++ CI CG C CP I Sbjct: 378 CIRCSQCAEACPAS-LLPQQLQWYAKSQEYDKCEELNLKDCIECGACAFVCP-SEIPLVH 435 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + A + + E R+E + R + D R Sbjct: 436 YYRQAKAEIRTRKQESEAAERAKVRFEEKKAR-LERDKAER 475 >gi|146296647|ref|YP_001180418.1| nitrite and sulphite reductase 4Fe-4S region [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410223|gb|ABP67227.1| nitrite and sulphite reductase 4Fe-4S region [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 282 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 9/76 (11%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G + + C C LC+A+CP +AI I+ + ID KC YCG Sbjct: 138 GIKGAVKPEWEKSSCTFCGLCQAVCPTKAIQIDE---------KNKEITIDRDKCTYCGR 188 Query: 109 CQEACPVDAIVEGPNF 124 C ++CP ++ P + Sbjct: 189 CVKSCPTNSWKGKPGY 204 Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 10/68 (14%) Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 C + E G + + C +CGLCQ CP AI E + Sbjct: 125 CGNNCLKAEENDLGIKGAVKPEW---EKSSCTFCGLCQAVCPTKAIQI-------DEKNK 174 Query: 133 ELYYDKER 140 E+ D+++ Sbjct: 175 EITIDRDK 182 >gi|6686277|sp|P49949|FER_ACIAM RecName: Full=Zinc-containing ferredoxin; AltName: Full=Seven-iron ferredoxin gi|169404651|pdb|2VKR|A Chain A, 3fe-4s, 4fe-4s Plus Zn Acidianus Ambivalens Ferredoxin gi|169404652|pdb|2VKR|B Chain B, 3fe-4s, 4fe-4s Plus Zn Acidianus Ambivalens Ferredoxin gi|169404653|pdb|2VKR|C Chain C, 3fe-4s, 4fe-4s Plus Zn Acidianus Ambivalens Ferredoxin gi|169404654|pdb|2VKR|D Chain D, 3fe-4s, 4fe-4s Plus Zn Acidianus Ambivalens Ferredoxin gi|169404655|pdb|2VKR|E Chain E, 3fe-4s, 4fe-4s Plus Zn Acidianus Ambivalens Ferredoxin gi|169404656|pdb|2VKR|F Chain F, 3fe-4s, 4fe-4s Plus Zn Acidianus Ambivalens Ferredoxin gi|169404657|pdb|2VKR|G Chain G, 3fe-4s, 4fe-4s Plus Zn Acidianus Ambivalens Ferredoxin Length = 103 Score = 48.6 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 25/84 (29%), Gaps = 2/84 (2%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 G P + CIA C CP P ++ I Sbjct: 21 VYGPVDPPKVLGIHGTIVGVDFDLCIADGSCITACPVNVFQWYDTPGHPASEKKADP--I 78 Query: 99 DMIKCIYCGLCQEACPVDAIVEGP 122 + CI+C C CPV AI P Sbjct: 79 NEQACIFCMACVNVCPVAAIDVKP 102 >gi|323492677|ref|ZP_08097821.1| iron-sulfur cluster-binding protein [Vibrio brasiliensis LMG 20546] gi|323313052|gb|EGA66172.1| iron-sulfur cluster-binding protein [Vibrio brasiliensis LMG 20546] Length = 554 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 10/81 (12%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C A+CP +A+ + + CI CGLC +ACP + Sbjct: 419 NDCTLCMSCVAVCPTRALHTDGE---------SPSLKFVEQDCIQCGLCTKACPEQVLTM 469 Query: 121 GPNFEFATETRQEL-YYDKER 140 + +RQ+ +E+ Sbjct: 470 TTRMNWDKASRQQASVIHQEK 490 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 6/54 (11%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 C+ C CPA A++ E + R +I+ C G C ACP +AI Sbjct: 187 CERCVDACPAGALSSEGSDKTGH------RIEINPYLCQGVGTCATACPTEAIH 234 >gi|315297365|gb|EFU56645.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 16-3] Length = 580 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|331668306|ref|ZP_08369154.1| electron transport complex protein RnfC [Escherichia coli TA271] gi|331063500|gb|EGI35411.1| electron transport complex protein RnfC [Escherichia coli TA271] Length = 620 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|306844922|ref|ZP_07477504.1| dihydroorotate dehydrogenase family protein [Brucella sp. BO1] gi|306274751|gb|EFM56535.1| dihydroorotate dehydrogenase family protein [Brucella sp. BO1] Length = 436 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 6/79 (7%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI C C A S +++ +C+ Sbjct: 330 QYLNLNYVTKARINQDLCIQCGRCHI-----ACEDTSHQAITAMVNGARHFEVIDEECVG 384 Query: 106 CGLCQEACPV-DAIVEGPN 123 C LC CPV + I Sbjct: 385 CNLCVNVCPVENCITMEQI 403 >gi|254713135|ref|ZP_05174946.1| dihydropyrimidine dehydrogenase [Brucella ceti M644/93/1] gi|254716511|ref|ZP_05178322.1| dihydropyrimidine dehydrogenase [Brucella ceti M13/05/1] gi|261218305|ref|ZP_05932586.1| dihydropyrimidine dehydrogenase [Brucella ceti M13/05/1] gi|261320846|ref|ZP_05960043.1| dihydropyrimidine dehydrogenase [Brucella ceti M644/93/1] gi|260923394|gb|EEX89962.1| dihydropyrimidine dehydrogenase [Brucella ceti M13/05/1] gi|261293536|gb|EEX97032.1| dihydropyrimidine dehydrogenase [Brucella ceti M644/93/1] Length = 436 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 6/79 (7%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI C C A S +++ +C+ Sbjct: 330 QYLNLNYVTKARINQDLCIQCGRCHI-----ACEDTSHQAITAMVNGARHFEVIDEECVG 384 Query: 106 CGLCQEACPV-DAIVEGPN 123 C LC CPV + I Sbjct: 385 CNLCVNVCPVENCITMEQI 403 >gi|254693078|ref|ZP_05154906.1| dihydropyrimidine dehydrogenase [Brucella abortus bv. 3 str. Tulya] gi|261213313|ref|ZP_05927594.1| dihydropyrimidine dehydrogenase [Brucella abortus bv. 3 str. Tulya] gi|260914920|gb|EEX81781.1| dihydropyrimidine dehydrogenase [Brucella abortus bv. 3 str. Tulya] Length = 436 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 6/79 (7%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI C C A S +++ +C+ Sbjct: 330 QYLNLNYVTKARINQDLCIQCGRCHI-----ACEDTSHQAITAMVNGARHFEVIDEECVG 384 Query: 106 CGLCQEACPV-DAIVEGPN 123 C LC CPV + I Sbjct: 385 CNLCVNVCPVENCITMEQI 403 >gi|148559324|ref|YP_001258321.1| dihydropyrimidine dehydrogenase [Brucella ovis ATCC 25840] gi|148370581|gb|ABQ60560.1| dihydroorotate dehydrogenase family protein [Brucella ovis ATCC 25840] Length = 436 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 6/79 (7%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI C C A S +++ +C+ Sbjct: 330 QYLNLNYVTKARINQDLCIQCGRCHI-----ACEDTSHQAITAMVNGARHFEVIDEECVG 384 Query: 106 CGLCQEACPV-DAIVEGPN 123 C LC CPV + I Sbjct: 385 CNLCVNVCPVENCITMEQI 403 >gi|148381245|ref|YP_001255786.1| [Fe] hydrogenase [Clostridium botulinum A str. ATCC 3502] gi|148290729|emb|CAL84860.1| putative iron-dependent hydrogenase [Clostridium botulinum A str. ATCC 3502] Length = 498 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 7/69 (10%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIKCIYCGLC 109 + +C C LC+ +CP AI P R I+ CI CG C Sbjct: 136 YIDQNKCRECGLCKKVCPYNAIVEVMRPCKKVCPTGALEINPDDKRAMIEKENCINCGAC 195 Query: 110 QEACPVDAI 118 ACP AI Sbjct: 196 MAACPFGAI 204 >gi|119899348|ref|YP_934561.1| putative benzoyl-CoA oxygenase component A [Azoarcus sp. BH72] gi|119671761|emb|CAL95675.1| putative Benzoyl-CoA oxygenase component A [Azoarcus sp. BH72] Length = 416 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 26/81 (32%), Positives = 33/81 (40%), Gaps = 12/81 (14%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 R++ E CI C CE ICP AIT ++ + Y + C C C C Sbjct: 12 RQHLIDPEICIRCNTCEEICPVDAITHDN-----------LNYVVKFDVCNGCLACISPC 60 Query: 114 PVDAIVEGPNFEFAT-ETRQE 133 P AI N E A T +E Sbjct: 61 PTGAIDSWRNVEKAVPYTLEE 81 >gi|23501189|ref|NP_697316.1| dihydropyrimidine dehydrogenase [Brucella suis 1330] gi|161618261|ref|YP_001592148.1| dihydropyrimidine dehydrogenase [Brucella canis ATCC 23365] gi|254703651|ref|ZP_05165479.1| dihydropyrimidine dehydrogenase [Brucella suis bv. 3 str. 686] gi|260567096|ref|ZP_05837566.1| dihydropyrimidine dehydrogenase [Brucella suis bv. 4 str. 40] gi|261754289|ref|ZP_05997998.1| dihydropyrimidine dehydrogenase [Brucella suis bv. 3 str. 686] gi|23347067|gb|AAN29231.1| dihydroorotate dehydrogenase family protein [Brucella suis 1330] gi|161335072|gb|ABX61377.1| dihydroorotate dehydrogenase family protein [Brucella canis ATCC 23365] gi|260156614|gb|EEW91694.1| dihydropyrimidine dehydrogenase [Brucella suis bv. 4 str. 40] gi|261744042|gb|EEY31968.1| dihydropyrimidine dehydrogenase [Brucella suis bv. 3 str. 686] Length = 436 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 6/79 (7%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI C C A S +++ +C+ Sbjct: 330 QYLNLNYVTKARINQDLCIQCGRCHI-----ACEDTSHQAITAMVNGARHFEVIDEECVG 384 Query: 106 CGLCQEACPV-DAIVEGPN 123 C LC CPV + I Sbjct: 385 CNLCVNVCPVENCITMEQI 403 >gi|323952614|gb|EGB48486.1| electron transporter [Escherichia coli H252] Length = 651 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|323388077|gb|ADX60300.1| hypothetical protein [Furcellaria lumbricalis] Length = 33 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 24/33 (72%), Positives = 29/33 (87%) Query: 105 YCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 +CG CQEACPVDAIVEGPN+E+ TET +EL Y+ Sbjct: 1 FCGACQEACPVDAIVEGPNYEYXTETHEELLYN 33 >gi|320354002|ref|YP_004195341.1| hydrogenase, Fe-only [Desulfobulbus propionicus DSM 2032] gi|320122504|gb|ADW18050.1| hydrogenase, Fe-only [Desulfobulbus propionicus DSM 2032] Length = 533 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 33/113 (29%), Gaps = 14/113 (12%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYP----NGEERCIACKLCEAI 72 + + T GS + RG + + +CI C C Sbjct: 32 LSGCKDAGKPVGGEGWTPQQYNAPGSWPVQVRGRVPIDPNNPSIVRDDRKCILCGQCAEA 91 Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 C E ++ DI C+ CG C CP AI E + E Sbjct: 92 C-------ERVQSVEGFYGLPIKDDIT---CVNCGQCALWCPTGAISERDDIE 134 >gi|299143379|ref|ZP_07036459.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517864|gb|EFI41603.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 1175 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 27/122 (22%), Positives = 41/122 (33%), Gaps = 33/122 (27%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV------------- 94 RG + N ++ CI C C +CP AI + Sbjct: 682 RGVAVNVPHWN-KDNCIQCNQCSFVCPHAAIRPFLLNTEEVANKPAEFETLAAKGKELAG 740 Query: 95 ---RYDIDMIKCIYCGLCQEACP--VDAIVEGP---------NFEFATETRQELYYDKER 140 R + ++ C CG C + CP A+V P N+E+A + KE Sbjct: 741 LEYRIQVSVLDCTGCGNCADVCPAKEKALVMTPLGEELEEAKNWEYAMK-----VEPKED 795 Query: 141 LL 142 L+ Sbjct: 796 LM 797 >gi|295681146|ref|YP_003609720.1| dihydroorotate dehydrogenase [Burkholderia sp. CCGE1002] gi|295441041|gb|ADG20209.1| dihydroorotate dehydrogenase family protein [Burkholderia sp. CCGE1002] Length = 426 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 6/77 (7%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + ++RCI C LC C + + R +++ C+ Sbjct: 328 QYLNLNYDIKARIDQDRCIQCGLCHIACEDTSHQAITATRDGK-----RHFEVVDANCVG 382 Query: 106 CGLCQEACPV-DAIVEG 121 C LC CPV I G Sbjct: 383 CNLCMHVCPVDQCITMG 399 >gi|229581623|ref|YP_002840022.1| putative ATPase RIL [Sulfolobus islandicus Y.N.15.51] gi|228012339|gb|ACP48100.1| ABC transporter related [Sulfolobus islandicus Y.N.15.51] Length = 602 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 23/76 (30%), Gaps = 5/76 (6%) Query: 47 FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 F + ++C C CP G + I CI C Sbjct: 2 FVKVAVINYDFCKPDKCNL--ECINFCPVD---RSGGKAIELSDIVKGKPVIYEETCIGC 56 Query: 107 GLCQEACPVDAIVEGP 122 G+C + CP +AI Sbjct: 57 GICVKKCPYEAISIVN 72 >gi|150008159|ref|YP_001302902.1| putative nitroreductase [Parabacteroides distasonis ATCC 8503] gi|255015113|ref|ZP_05287239.1| putative nitroreductase [Bacteroides sp. 2_1_7] gi|149936583|gb|ABR43280.1| putative nitroreductase [Parabacteroides distasonis ATCC 8503] Length = 286 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 26/77 (33%), Gaps = 11/77 (14%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 +E CI C C +CP+ T E R CI CG C + C Sbjct: 1 MTLNIDQESCIKCGKCVRVCPSDIFTQERAGETIGLVRV--------ESCIVCGHCVDVC 52 Query: 114 PVDAIVEGPNFEFATET 130 P ++ EF E Sbjct: 53 PTGSVSHS---EFPPEK 66 >gi|119899328|ref|YP_934541.1| formate dehydrogenase subunit alpha [Azoarcus sp. BH72] gi|119671741|emb|CAL95654.1| probable formate dehydrogenase, alpha subunit [Azoarcus sp. BH72] Length = 961 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 28/86 (32%), Gaps = 11/86 (12%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P E+ G CI C C C + + H G + + Sbjct: 126 PREQPVADTSHPGIAV------NLAACIQCNRCLRACR-EIQVNDVIGYAHRGAESKIVF 178 Query: 97 D----IDMIKCIYCGLCQEACPVDAI 118 D + C+ CG C +ACP A+ Sbjct: 179 DLDVGMGTSSCVGCGECVQACPTGAL 204 >gi|83590554|ref|YP_430563.1| NADH dehydrogenase (quinone) [Moorella thermoacetica ATCC 39073] gi|83573468|gb|ABC20020.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Moorella thermoacetica ATCC 39073] Length = 619 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 24/68 (35%), Gaps = 10/68 (14%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 L Y +C C C +CP AI+ + ID CI CG C Sbjct: 559 QELLSYVIDAGKCTGCGACSRVCPVGAISGGKKEA----------HQIDPAACIKCGSCY 608 Query: 111 EACPVDAI 118 E C AI Sbjct: 609 EKCRFGAI 616 Score = 42.4 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 17/44 (38%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 I + + Y ID KC CG C CPV AI G Sbjct: 547 HIRDHRCPAHVCQELLSYVIDAGKCTGCGACSRVCPVGAISGGK 590 >gi|320528927|ref|ZP_08030019.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Selenomonas artemidis F0399] gi|320138557|gb|EFW30447.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Selenomonas artemidis F0399] Length = 1177 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 17/90 (18%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQ--------------AITIESGPRCHDGTRRT 93 RG N +E+CI C C +CP A + G + Sbjct: 677 RGTAISVPVWN-KEKCIQCNQCSLVCPHASIRPVLTTDEELAAAPEGFESIKSKPGKAQN 735 Query: 94 VRYDIDMI--KCIYCGLCQEACPVDAIVEG 121 + + I + C+ CG C + CP A+ Sbjct: 736 LNFTIAVSTLDCLGCGNCAQVCPGKALDMT 765 >gi|313895482|ref|ZP_07829038.1| pyruvate synthase [Selenomonas sp. oral taxon 137 str. F0430] gi|312975608|gb|EFR41067.1| pyruvate synthase [Selenomonas sp. oral taxon 137 str. F0430] Length = 1177 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 31/90 (34%), Gaps = 17/90 (18%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQ--------------AITIESGPRCHDGTRRT 93 RG N +E+CI C C +CP A + G + Sbjct: 677 RGTAISVPVWN-KEKCIQCNQCSLVCPHASIRPVLTTDEELAAAPEGFESIKSKPGKAQN 735 Query: 94 VRYDIDMI--KCIYCGLCQEACPVDAIVEG 121 + + I + C+ CG C + CP A+ Sbjct: 736 LNFTIAVSTLDCLGCGNCAQVCPGKALDMT 765 >gi|306842448|ref|ZP_07475099.1| dihydroorotate dehydrogenase family protein [Brucella sp. BO2] gi|306287304|gb|EFM58784.1| dihydroorotate dehydrogenase family protein [Brucella sp. BO2] Length = 436 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 6/79 (7%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI C C A S +++ +C+ Sbjct: 330 QYLNLNYVTKARINQDLCIQCGRCHI-----ACEDTSHQAITAMVNGARHFEVIDEECVG 384 Query: 106 CGLCQEACPV-DAIVEGPN 123 C LC CPV + I Sbjct: 385 CNLCVNVCPVENCITMEQI 403 >gi|260886745|ref|ZP_05898008.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Selenomonas sputigena ATCC 35185] gi|330839436|ref|YP_004414016.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Selenomonas sputigena ATCC 35185] gi|260863597|gb|EEX78097.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Selenomonas sputigena ATCC 35185] gi|329747200|gb|AEC00557.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Selenomonas sputigena ATCC 35185] Length = 1174 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 26/85 (30%), Gaps = 14/85 (16%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQ--------------AITIESGPRCHDGTRRTVRYD 97 A+ E+CI C C +CP A + Sbjct: 680 AINVPVWNAEKCIGCNQCSYVCPHATIRPVLTTDAEKDAAPAGFPWKKSKAIKDYNFTIA 739 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 + + C+ CG C + CP A+ P Sbjct: 740 VSTMDCLGCGNCAQVCPAKALDMKP 764 >gi|253583402|ref|ZP_04860600.1| nitroreductase [Fusobacterium varium ATCC 27725] gi|251833974|gb|EES62537.1| nitroreductase [Fusobacterium varium ATCC 27725] Length = 266 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 17/89 (19%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E+CI C C C + + +E+G G +C+ CG C CPVDA+ Sbjct: 5 DKEKCIGCGACVKDCFPENLFLENGKAEIKG------------RCMQCGHCIAVCPVDAV 52 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDR 147 + E +E YDKE+ + DR Sbjct: 53 SITN---YPQEGIEE--YDKEKFDISPDR 76 >gi|218887477|ref|YP_002436798.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758431|gb|ACL09330.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 777 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 24/61 (39%), Gaps = 5/61 (8%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C +CE ICP AI+ R +D KCI CG C ACP Sbjct: 718 CRDCGICETICPQAAIS-----RREVQGGCGFEMAVDAEKCIGCGFCAGACPCGIWNLVE 772 Query: 123 N 123 N Sbjct: 773 N 773 >gi|157375179|ref|YP_001473779.1| electron transport complex protein RnfC [Shewanella sediminis HAW-EB3] gi|157317553|gb|ABV36651.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella sediminis HAW-EB3] Length = 842 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 35/105 (33%), Gaps = 9/105 (8%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C C +CPAQ + + + ++ CI CG C CP I Sbjct: 384 CIRCGECAQVCPAQLLPQQLFWHAKAKE-YDKAVNFNLADCIECGCCTYVCP-SNIPLVE 441 Query: 123 NFEFAT-------ETRQELYYDKERLLNNGDRWESEIVRNIVTDS 160 + A E +++ K+R R E E + Sbjct: 442 YYRIAKSAVKTEAEEKKQAELAKQRFELRTQRLEDERLAREAKQK 486 >gi|119872012|ref|YP_930019.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Pyrobaculum islandicum DSM 4184] gi|119673420|gb|ABL87676.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Pyrobaculum islandicum DSM 4184] Length = 82 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 24/63 (38%), Gaps = 10/63 (15%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E+CI C LC C P R + ID C CG+C CPV AI Sbjct: 28 EKCIDCGLCWLYC----------PESVIEWERGQKIQIDYTYCKGCGICANVCPVKAIDM 77 Query: 121 GPN 123 P Sbjct: 78 VPE 80 >gi|51596577|ref|YP_070768.1| pyruvate-flavodoxin oxidoreductase [Yersinia pseudotuberculosis IP 32953] gi|153948855|ref|YP_001400778.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Yersinia pseudotuberculosis IP 31758] gi|186895635|ref|YP_001872747.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [Yersinia pseudotuberculosis PB1/+] gi|51589859|emb|CAH21491.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia pseudotuberculosis IP 32953] gi|152960350|gb|ABS47811.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Yersinia pseudotuberculosis IP 31758] gi|186698661|gb|ACC89290.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Yersinia pseudotuberculosis PB1/+] Length = 1177 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 23/138 (16%), Positives = 33/138 (23%), Gaps = 36/138 (26%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A + C C C A C Sbjct: 646 MLAGLGDTL------PVSAFPPDGTWPVGTTQWEKRNIAENIPIWQPDLCTQCNHCVAAC 699 Query: 74 PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 P A +++ R G + + C C LC E CP Sbjct: 700 PHSAIRAKVVQPEAMAGAPDSLQSLDVKARDMRGQKY--VLQVAPEDCTGCNLCYEVCPA 757 Query: 116 --------DAIVEGPNFE 125 AI P E Sbjct: 758 KDRQNPEIKAINMRPRLE 775 >gi|302342956|ref|YP_003807485.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfarculus baarsii DSM 2075] gi|301639569|gb|ADK84891.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfarculus baarsii DSM 2075] Length = 550 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 27/76 (35%), Positives = 30/76 (39%), Gaps = 14/76 (18%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 S R HALR P +C C LC CP QAI + G I Sbjct: 5 VSAHNRPIHALRILPE---KCTGCVLCMKACPNQAIRVHDGKAV-----------IRFDH 50 Query: 103 CIYCGLCQEACPVDAI 118 C+ CG C CP DAI Sbjct: 51 CVACGACYRVCPADAI 66 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 13/40 (32%) Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 R I KC C LC +ACP AI Sbjct: 2 NQAVSAHNRPIHALRILPEKCTGCVLCMKACPNQAIRVHD 41 >gi|282878344|ref|ZP_06287136.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Prevotella buccalis ATCC 35310] gi|281299530|gb|EFA91907.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Prevotella buccalis ATCC 35310] Length = 1226 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 33/101 (32%), Gaps = 18/101 (17%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIE---------------SGPRCHDGTRR 92 RG A E CI C C +CP AI + Sbjct: 679 RGVEAFNPEWT-PENCIQCNKCAYVCPHAAIRPFVLDEEEVKGFNDKTLAMKVPRPMAGM 737 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 R + ++ C+ CG C + CP + +G + TR E Sbjct: 738 NFRIQVSVLDCVGCGNCADVCPGN--KQGKALKMVPFTRDE 776 >gi|260592305|ref|ZP_05857763.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Prevotella veroralis F0319] gi|260535755|gb|EEX18372.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Prevotella veroralis F0319] Length = 1191 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 22/82 (26%), Gaps = 16/82 (19%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK----- 102 RG A E CI C C +CP I DI K Sbjct: 678 RGVAAFVPAW-DAENCIQCNKCAFVCPHACIRPFVLDEAEKAGFNEPTLDILAPKQLKGM 736 Query: 103 ----------CIYCGLCQEACP 114 C CG C + CP Sbjct: 737 QFRIEVSVLDCTGCGNCADVCP 758 >gi|254563948|ref|YP_003071043.1| Tungsten-containing formate dehydrogenase subunit alpha [Methylobacterium extorquens DM4] gi|254271226|emb|CAX27238.1| Tungsten-containing formate dehydrogenase alpha subunit [Methylobacterium extorquens DM4] Length = 989 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 3/98 (3%) Query: 25 RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESG 83 +F+ ++ + + R+ + + + CI C LC C Q + Sbjct: 175 SHFWVQADVLDVTESRFPAAERWTSDVSHPAMSVNLDACIQCNLCVRACREVQVNDVIGM 234 Query: 84 PRCHDGTRRTVRYDIDM--IKCIYCGLCQEACPVDAIV 119 G++ +D M C+ CG C +ACP A++ Sbjct: 235 AYRAAGSKVVFDFDDPMGGSTCVACGECVQACPTGALM 272 >gi|198273884|ref|ZP_03206416.1| hypothetical protein BACPLE_00018 [Bacteroides plebeius DSM 17135] gi|198272962|gb|EDY97231.1| hypothetical protein BACPLE_00018 [Bacteroides plebeius DSM 17135] Length = 399 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 20/62 (32%), Gaps = 12/62 (19%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C C +C CP AI P C CG C +ACP +A Sbjct: 13 RDACTQCGICADSCPFGAIQFNEYPEVD------------PYSCRLCGTCVQACPAEAWD 60 Query: 120 EG 121 Sbjct: 61 MQ 62 Score = 38.2 bits (87), Expect = 0.35, Method: Composition-based stats. Identities = 9/34 (26%), Positives = 14/34 (41%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 + C CG+C ++CP AI E + Sbjct: 10 QLRRDACTQCGICADSCPFGAIQFNEYPEVDPYS 43 >gi|123967404|ref|XP_001313877.1| 4Fe-4S binding domain containing protein [Trichomonas vaginalis G3] gi|121895788|gb|EAY00960.1| 4Fe-4S binding domain containing protein [Trichomonas vaginalis G3] Length = 324 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 26/68 (38%), Gaps = 10/68 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L + CI C C CP AITI Y +D KC CGLC+ Sbjct: 253 LINHLTNPSACIMCGKCTQ-CPNDAITIVPS---------RWIYKVDPYKCNGCGLCESV 302 Query: 113 CPVDAIVE 120 CP AI Sbjct: 303 CPTGAIEL 310 >gi|71065390|ref|YP_264117.1| putative electron transport complex, RnfABCDGE type, B subunit [Psychrobacter arcticus 273-4] gi|71038375|gb|AAZ18683.1| putative electron transport complex, RnfABCDGE type, B subunit [Psychrobacter arcticus 273-4] Length = 280 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 25/98 (25%), Gaps = 10/98 (10%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 + A T R E+ CI C C CP AI Sbjct: 85 TIAQIINADITTLSAESSKWPLDSHSQRPVEVRAVIREDDCIGCTKCIPACPVDAIVGTG 144 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + I C C LC CPVD I Sbjct: 145 K----------HMHTIFTDLCTGCELCIAPCPVDCIDL 172 Score = 39.3 bits (90), Expect = 0.16, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 20/54 (37%) Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 A + + H VR I CI C C ACPVDAIV T Sbjct: 99 AESSKWPLDSHSQRPVEVRAVIREDDCIGCTKCIPACPVDAIVGTGKHMHTIFT 152 >gi|88706625|ref|ZP_01104328.1| Electron transport complex protein rnfB [Congregibacter litoralis KT71] gi|88699121|gb|EAQ96237.1| Electron transport complex protein rnfB [Congregibacter litoralis KT71] Length = 202 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 27/84 (32%), Gaps = 10/84 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E E EE CI C C CP AI + + + Sbjct: 97 EPTPLDAEHGAETETTVAFIIEEDCIGCTKCIQACPVDAILGAAKQ----------MHTV 146 Query: 99 DMIKCIYCGLCQEACPVDAIVEGP 122 +C C LC + CPVD I P Sbjct: 147 IASECTGCDLCVDPCPVDCIEMLP 170 >gi|316965841|gb|EFV50509.1| putative ABC transporter, ATP-binding protein [Trichinella spiralis] Length = 610 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 32/95 (33%), Gaps = 4/95 (4%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 K R +RC K C +C + G C + T + I Sbjct: 3 KLPKPGHTEQSKITRIAIVNNDRCKP-KNCGQVCKKSCPVVRMGKLCIEVTPSSKIAFIS 61 Query: 100 MIKCIYCGLCQEACPVDAIVEGP---NFEFATETR 131 CI CG+C + CP DAI N E T R Sbjct: 62 ESLCIGCGICVKKCPYDAISIINLPSNLEKHTTHR 96 >gi|301050123|ref|ZP_07197027.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 185-1] gi|300298145|gb|EFJ54530.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 185-1] Length = 579 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|293405128|ref|ZP_06649120.1| electron transport complex protein RnfC [Escherichia coli FVEC1412] gi|291427336|gb|EFF00363.1| electron transport complex protein RnfC [Escherichia coli FVEC1412] Length = 633 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|258452643|ref|ZP_05700644.1| formate dehydrogenase [Staphylococcus aureus A5948] gi|257859680|gb|EEV82527.1| formate dehydrogenase [Staphylococcus aureus A5948] Length = 715 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 3/78 (3%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQE 111 Y +CI C C C + R + + I+ C+ CG C Sbjct: 139 FYRYDPNQCILCGRCVEACQDIEVNETIRIDWDREHPRVIWDNDVPINESSCVSCGQCAT 198 Query: 112 ACPVDAIVEGPNFEFATE 129 CP +A++E A Sbjct: 199 VCPCNAMMEVNMEGNAGY 216 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 17/68 (25%), Gaps = 8/68 (11%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105 R C C CE A Y D +CI Sbjct: 90 RILEKHMLYCTVCDYNNGDCEIHNTMDAWGLQHQTYEYKEKPYEKDYGPFYRYDPNQCIL 149 Query: 106 CGLCQEAC 113 CG C EAC Sbjct: 150 CGRCVEAC 157 >gi|255102248|ref|ZP_05331225.1| putative nitroreductase [Clostridium difficile QCD-63q42] Length = 258 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 31/84 (36%), Gaps = 11/84 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E CI C LC+ CP I IE+ I C+ CG C CP AI Sbjct: 10 DKELCIGCGLCKNDCPVNNIIIENKKSV-----------IKKQDCLMCGHCAAICPTKAI 58 Query: 119 VEGPNFEFATETRQELYYDKERLL 142 E E + D + LL Sbjct: 59 ALTGFDEPPIELTNKPKLDSDELL 82 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 17/33 (51%) Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + ++D CI CGLC+ CPV+ I+ Sbjct: 1 MKYQHIIEVDKELCIGCGLCKNDCPVNNIIIEN 33 >gi|218885987|ref|YP_002435308.1| nitrite and sulphite reductase 4Fe-4S region [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756941|gb|ACL07840.1| nitrite and sulphite reductase 4Fe-4S region [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 267 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 38/108 (35%), Gaps = 13/108 (12%) Query: 12 FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71 FL++ V + + F+ + P G E C C LCE Sbjct: 53 FLRDVVRG-PILHHHAFRVAVSA-CPNGCSRPHIADVGIIRAWTPGRASEACTRCGLCER 110 Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 +CP A+T+E + C+ CGLC + CP A+ Sbjct: 111 LCPDHAMTVEEDG-----------PRLHPENCLSCGLCIKRCPEKALP 147 >gi|218780883|ref|YP_002432201.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfatibacillum alkenivorans AK-01] gi|218762267|gb|ACL04733.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfatibacillum alkenivorans AK-01] Length = 354 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 11/60 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E C C+ C C AI + + I++ +CI CGLC CP +AI Sbjct: 277 EDCTGCETCLERCQMGAIDM-----------KDDVAQINLDRCIGCGLCVTTCPTEAITL 325 Score = 35.5 bits (80), Expect = 2.5, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 20/67 (29%), Gaps = 4/67 (5%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 N C C C + A I P+ + + C C C E C + Sbjct: 237 QNPGGMCNCCGDCCGVLRA----INKHPKPVEIVFSNHYAVVSDEDCTGCETCLERCQMG 292 Query: 117 AIVEGPN 123 AI + Sbjct: 293 AIDMKDD 299 >gi|218532920|ref|YP_002423736.1| formate dehydrogenase, subunit alpha [Methylobacterium chloromethanicum CM4] gi|218525223|gb|ACK85808.1| formate dehydrogenase, alpha subunit [Methylobacterium chloromethanicum CM4] Length = 989 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 3/98 (3%) Query: 25 RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESG 83 +F+ ++ + + R+ + + + CI C LC C Q + Sbjct: 175 SHFWVQADVLDVTESRFPAAERWTSDVSHPAMSVNLDACIQCNLCVRACREVQVNDVIGM 234 Query: 84 PRCHDGTRRTVRYDIDM--IKCIYCGLCQEACPVDAIV 119 G++ +D M C+ CG C +ACP A++ Sbjct: 235 AYRAAGSKVVFDFDDPMGGSTCVACGECVQACPTGALM 272 >gi|15896720|ref|NP_350069.1| nitroreductase family protein [Clostridium acetobutylicum ATCC 824] gi|15026573|gb|AAK81409.1|AE007845_10 Nitroreductase family protein fused to ferredoxin domain [Clostridium acetobutylicum ATCC 824] gi|325510888|gb|ADZ22524.1| Nitroreductase family protein fused to ferredoxin domain [Clostridium acetobutylicum EA 2018] Length = 269 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 10/66 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + ++C+ C +C C P + D+ KCI CG C Sbjct: 1 MNLITVNHDKCVKCGICVNEC----------PEQIIKMKENSPEDVCPQKCIACGHCVAV 50 Query: 113 CPVDAI 118 CP +AI Sbjct: 51 CPKEAI 56 Score = 37.0 bits (84), Expect = 0.94, Method: Composition-based stats. Identities = 9/27 (33%), Positives = 13/27 (48%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPN 123 ++ KC+ CG+C CP I N Sbjct: 5 TVNHDKCVKCGICVNECPEQIIKMKEN 31 >gi|14521282|ref|NP_126757.1| indolepyruvate ferredoxin oxidoreductase, subunit alpha [Pyrococcus abyssi GE5] gi|5458500|emb|CAB49988.1| iorA-like indolepyruvate ferredoxin oxidoreductase related protein, alpha and beta subunits [Pyrococcus abyssi GE5] Length = 613 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 9/81 (11%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 P R EE+C CK C + QA+ + R + ID + C Sbjct: 542 PVIRRGETREPPIIIEEKCTGCKACILLSGCQALIYDPETR---------KVKIDELICT 592 Query: 105 YCGLCQEACPVDAIVEGPNFE 125 CG+C + CP DAI E Sbjct: 593 GCGICNQLCPFDAIKFREELE 613 >gi|119775574|ref|YP_928314.1| iron-sulfur cluster-binding protein [Shewanella amazonensis SB2B] gi|119768074|gb|ABM00645.1| iron-sulfur cluster-binding protein [Shewanella amazonensis SB2B] Length = 935 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 33/89 (37%), Gaps = 10/89 (11%) Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 + I + + D + KCI CG C++ CP A+ P AT R Sbjct: 511 LLNPGVILNDDATVHVKNIKPCPVVDDLVDKCIECGFCEKTCPTSALNLTPRQRIATL-R 569 Query: 132 QELYYDKERLLNNGDRWESEIVRNIVTDS 160 + RL +GD E + + D+ Sbjct: 570 E-----ISRLEASGD----EEAASRMRDA 589 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 26/76 (34%), Gaps = 18/76 (23%) Query: 57 PNGEERCIACKLCEAICPAQAITIES-----------------GPRCHDGTRRTVRYDID 99 + ++CI C CE CP A+ + R +YD+ Sbjct: 536 DDLVDKCIECGFCEKTCPTSALNLTPRQRIATLREISRLEASGDEEAASRMRDAAKYDVV 595 Query: 100 MIKCIYCGLCQEACPV 115 C C LC ACPV Sbjct: 596 -DTCAACQLCTIACPV 610 >gi|219668159|ref|YP_002458594.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfitobacterium hafniense DCB-2] gi|219538419|gb|ACL20158.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfitobacterium hafniense DCB-2] Length = 421 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 6/60 (10%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C CE +CP AI++ + +D C+ CG+C +CP I Sbjct: 292 QECIGCGKCEKVCPVLAISMSTNAEGK------KVAQVDHEVCLGCGICVRSCPKKVIEL 345 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 12/23 (52%), Positives = 14/23 (60%) Query: 103 CIYCGLCQEACPVDAIVEGPNFE 125 CI CG C++ CPV AI N E Sbjct: 294 CIGCGKCEKVCPVLAISMSTNAE 316 >gi|332161836|ref|YP_004298413.1| electron transport complex protein RnfB [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318605661|emb|CBY27159.1| electron transport complex protein RnfB [Yersinia enterocolitica subsp. palearctica Y11] gi|325666066|gb|ADZ42710.1| electron transport complex protein RnfB [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 207 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 24/78 (30%), Gaps = 10/78 (12%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C C CP AI + + + C C LC CP D Sbjct: 111 FIDEANCIGCTKCIQACPVDAIVGAT----------RAMHTVLPDLCTGCDLCVSPCPTD 160 Query: 117 AIVEGPNFEFATETRQEL 134 I P + +L Sbjct: 161 CIEMIPVATTTANWKWDL 178 >gi|331663101|ref|ZP_08364011.1| electron transport complex protein RnfC [Escherichia coli TA143] gi|331058900|gb|EGI30877.1| electron transport complex protein RnfC [Escherichia coli TA143] Length = 640 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|300921314|ref|ZP_07137681.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 115-1] gi|300411733|gb|EFJ95043.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 115-1] Length = 576 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|242371958|ref|ZP_04817532.1| formate dehydrogenase, alpha subunit [Staphylococcus epidermidis M23864:W1] gi|242350337|gb|EES41938.1| formate dehydrogenase, alpha subunit [Staphylococcus epidermidis M23864:W1] Length = 989 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 30/89 (33%), Gaps = 13/89 (14%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P+EK Y ++CI C C C + R + Sbjct: 136 PYEKDYGP----------FYRYDPDQCILCGRCVEACQDVEVNETISIDWDREHPRVIWD 185 Query: 97 D---IDMIKCIYCGLCQEACPVDAIVEGP 122 + I+ C+ CG C CP +A++E Sbjct: 186 NDVPINESSCVSCGQCATVCPCNAMMEVN 214 Score = 41.2 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 16/68 (23%), Gaps = 8/68 (11%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105 R C C CE Y D +CI Sbjct: 95 RILEKHMLYCTVCDYNNGDCEIHNTMDEWGVQHQTYEYKEKPYEKDYGPFYRYDPDQCIL 154 Query: 106 CGLCQEAC 113 CG C EAC Sbjct: 155 CGRCVEAC 162 >gi|256810131|ref|YP_003127500.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus fervens AG86] gi|256793331|gb|ACV24000.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus fervens AG86] Length = 355 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 35/71 (49%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R + + +++C+ C +C CPA AI ++ + +++ KC+YC Sbjct: 141 RKKFVIGEVNINKDKCVLCGICAEYCPADAIDLKYNYPTPTNPKPITDIEVNKDKCVYCK 200 Query: 108 LCQEACPVDAI 118 +C+ CP +AI Sbjct: 201 VCEFVCPHNAI 211 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 25/72 (34%), Positives = 32/72 (44%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 GE R ++ C+ C +C ICP AI + G + DID C CGL Sbjct: 19 GEVEKRELFWSDDACVGCGICADICPVGAIALGPLGAIAKGDVIAPKLDIDKDVCALCGL 78 Query: 109 CQEACPVDAIVE 120 C ACP DA+ Sbjct: 79 CASACPFDAMDL 90 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 1/77 (1%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 + R +E+C+ C+ CE +CP AI++E +I+ KC+ CG Sbjct: 102 KYPKIKRDIKISQEKCVLCEQCEMVCPQLAISVE-RELAERKKFVIGEVNINKDKCVLCG 160 Query: 108 LCQEACPVDAIVEGPNF 124 +C E CP DAI N+ Sbjct: 161 ICAEYCPADAIDLKYNY 177 Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 8/83 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + F+GE + E C AC C AICP A+ P D + R Sbjct: 254 CPADAIEVEKPFKGELII-----DENACNACGACIAICPCGALEF---PAPKDKAEKVPR 305 Query: 96 YDIDMIKCIYCGLCQEACPVDAI 118 ++ C+ CG C +ACPV+AI Sbjct: 306 IVVNQNLCVLCGACTKACPVNAI 328 Score = 40.9 bits (94), Expect = 0.057, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 9/107 (8%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT----IESGPRCHDGTRRTVRY 96 G +G+ + ++ C C LC + CP A+ +S + Sbjct: 51 GPLGAIAKGDVIAPKLDIDKDVCALCGLCASACPFDAMDLKINGKSIKEDEKYPKIKRDI 110 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR---QELYYDKER 140 I KC+ C C+ CP AI E A + E+ +K++ Sbjct: 111 KISQEKCVLCEQCEMVCPQLAI--SVERELAERKKFVIGEVNINKDK 155 Score = 38.5 bits (88), Expect = 0.28, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 8/80 (10%) Query: 53 LRRYPNGEERCIACKLCEAICPAQ--------AITIESGPRCHDGTRRTVRYDIDMIKCI 104 + +++C+ CK+CE +CP ++ P+ + +D C+ Sbjct: 186 ITDIEVNKDKCVYCKVCEFVCPHNAIEVICYKCPMMKRIPQAELYNDINGKTVVDKDLCV 245 Query: 105 YCGLCQEACPVDAIVEGPNF 124 CG C CP DAI F Sbjct: 246 TCGWCAFICPADAIEVEKPF 265 Score = 38.5 bits (88), Expect = 0.34, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 8/62 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ C+ C C ICPA AI +E + ID C CG C CP A+ Sbjct: 240 DKDLCVTCGWCAFICPADAIEVEKPFKGEL--------IIDENACNACGACIAICPCGAL 291 Query: 119 VE 120 Sbjct: 292 EF 293 Score = 34.3 bits (77), Expect = 6.2, Method: Composition-based stats. Identities = 11/22 (50%), Positives = 14/22 (63%) Query: 101 IKCIYCGLCQEACPVDAIVEGP 122 C+ CG+C + CPV AI GP Sbjct: 31 DACVGCGICADICPVGAIALGP 52 >gi|229585345|ref|YP_002843847.1| ATPase RIL [Sulfolobus islandicus M.16.27] gi|228020395|gb|ACP55802.1| ABC transporter related [Sulfolobus islandicus M.16.27] Length = 602 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 23/76 (30%), Gaps = 5/76 (6%) Query: 47 FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 F + ++C C CP G + I CI C Sbjct: 2 FVRVAVINYDFCKPDKCNL--QCINFCPVD---RSGGKAIELSDIVKGKPVIYEETCIGC 56 Query: 107 GLCQEACPVDAIVEGP 122 G+C + CP +AI Sbjct: 57 GICVKKCPYEAISIVN 72 >gi|188533913|ref|YP_001907710.1| electron transport complex protein RnfB [Erwinia tasmaniensis Et1/99] gi|226735419|sp|B2VEQ2|RNFB_ERWT9 RecName: Full=Electron transport complex protein rnfB gi|188028955|emb|CAO96821.1| Electron transport complex protein [Erwinia tasmaniensis Et1/99] Length = 191 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 27/96 (28%), Gaps = 10/96 (10%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E E + E CI C C CP AI + + + Sbjct: 92 EPQPLGAEEAREPERKVAWIDEANCIGCTKCIQACPVDAIVGAT----------RAMHTV 141 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134 C C LC CP D I P + +L Sbjct: 142 LSDICTGCDLCVAPCPTDCIEMRPVATTTANWKWDL 177 >gi|163853978|ref|YP_001642021.1| formate dehydrogenase, alpha subunit [Methylobacterium extorquens PA1] gi|163665583|gb|ABY32950.1| formate dehydrogenase, alpha subunit [Methylobacterium extorquens PA1] Length = 989 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 3/98 (3%) Query: 25 RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESG 83 +F+ ++ + + R+ + + + CI C LC C Q + Sbjct: 175 SHFWVQADVLDVTESRFPAAERWTSDVSHPAMSVNLDACIQCNLCVRACREVQVNDVIGM 234 Query: 84 PRCHDGTRRTVRYDIDM--IKCIYCGLCQEACPVDAIV 119 G++ +D M C+ CG C +ACP A++ Sbjct: 235 AYRAAGSKVVFDFDDPMGGSTCVACGECVQACPTGALM 272 >gi|150390052|ref|YP_001320101.1| electron transport complex, RnfABCDGE type, B subunit [Alkaliphilus metalliredigens QYMF] gi|149949914|gb|ABR48442.1| electron transport complex, RnfABCDGE type, B subunit [Alkaliphilus metalliredigens QYMF] Length = 328 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 34/91 (37%), Gaps = 10/91 (10%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 T EK T ++ E+ CI C +C+ CP AI E Sbjct: 246 KCTNCFVCVEKCPTKAIEGQLEKRKKALIHEDLCIGCTICKKNCPVDAIEGELKENHK-- 303 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 I KCI CG+C++ CP DAI Sbjct: 304 --------IIEDKCIGCGVCEQKCPKDAITM 326 Score = 40.9 bits (94), Expect = 0.065, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 38/110 (34%), Gaps = 21/110 (19%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 P+E+ E P CI+CK+C CP +AI E+ D Sbjct: 185 KDVIDMVPYEQDVIITCNNKETGKVVRPKCGVACISCKICVKSCPFEAIDFENNLAFIDY 244 Query: 90 TRRTVRYD---------------------IDMIKCIYCGLCQEACPVDAI 118 + T + I CI C +C++ CPVDAI Sbjct: 245 EKCTNCFVCVEKCPTKAIEGQLEKRKKALIHEDLCIGCTICKKNCPVDAI 294 Score = 38.5 bits (88), Expect = 0.30, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 5/83 (6%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV-----RYDIDMIKCIYCGL 108 R E+C C C A+CP I + + T + CI C + Sbjct: 164 RIARINPEKCTGCTKCIAVCPKDVIDMVPYEQDVIITCNNKETGKVVRPKCGVACISCKI 223 Query: 109 CQEACPVDAIVEGPNFEFATETR 131 C ++CP +AI N F + Sbjct: 224 CVKSCPFEAIDFENNLAFIDYEK 246 Score = 37.4 bits (85), Expect = 0.72, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 21/66 (31%), Gaps = 10/66 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + + C+ C CP AI I I+ KC C C CP D Sbjct: 137 KSCKYGCLGLGTCVRECPFDAIDIVDNRIA----------RINPEKCTGCTKCIAVCPKD 186 Query: 117 AIVEGP 122 I P Sbjct: 187 VIDMVP 192 >gi|126667559|ref|ZP_01738529.1| electron transport complex protein RnfC [Marinobacter sp. ELB17] gi|126627985|gb|EAZ98612.1| electron transport complex protein RnfC [Marinobacter sp. ELB17] Length = 636 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 10/72 (13%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACPVD 116 + CI C C +A +E P+ + +D +++ CI CG C CP Sbjct: 367 QPCIRCGQCA-----EACPMELLPQQLFWHAKATEFDKAEHLNLFDCIECGACSYVCP-S 420 Query: 117 AIVEGPNFEFAT 128 +I + FA Sbjct: 421 SIPLVQYYRFAK 432 >gi|14250935|emb|CAC39231.1| HymC protein [Eubacterium acidaminophilum] Length = 578 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 3/78 (3%) Query: 59 GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115 +CI C C A+C Q + I + T + M CIYCG C CPV Sbjct: 142 DPNKCILCGRCVAVCNKVQEVGILAFTNRGVETEVAPAFATSMADAPCIYCGQCVNVCPV 201 Query: 116 DAIVEGPNFEFATETRQE 133 A+ E + E E ++ Sbjct: 202 AALREKTDIEKVWEVLED 219 >gi|240141433|ref|YP_002965913.1| Tungsten-containing formate dehydrogenase alpha subunit [Methylobacterium extorquens AM1] gi|22652728|gb|AAN03799.1|AF489516_2 tungsten-containing formate dehydrogenase alpha subunit [Methylobacterium extorquens] gi|240011410|gb|ACS42636.1| Tungsten-containing formate dehydrogenase alpha subunit [Methylobacterium extorquens AM1] Length = 989 Score = 48.2 bits (113), Expect = 3e-04, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 3/98 (3%) Query: 25 RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESG 83 +F+ ++ + + R+ + + + CI C LC C Q + Sbjct: 175 SHFWVQADVLDVTESRFPAAERWTSDVSHPAMSVNLDACIQCNLCVRACREVQVNDVIGM 234 Query: 84 PRCHDGTRRTVRYDIDM--IKCIYCGLCQEACPVDAIV 119 G++ +D M C+ CG C +ACP A++ Sbjct: 235 AYRAAGSKVVFDFDDPMGGSTCVACGECVQACPTGALM 272 >gi|313672282|ref|YP_004050393.1| NADH dehydrogenase (quinone) [Calditerrivibrio nitroreducens DSM 19672] gi|312939038|gb|ADR18230.1| NADH dehydrogenase (quinone) [Calditerrivibrio nitroreducens DSM 19672] Length = 595 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 40/97 (41%), Gaps = 15/97 (15%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 ++Y F+ + + +K R AL + E+RC C +C +CP AIT E Sbjct: 513 TTIKY-FRDEYEAHIKNKKCPA----RECSALIEFVVAEDRCKKCGICFKVCPVGAITWE 567 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 G ID KC+ C C CP +AI Sbjct: 568 KGKVA----------YIDKSKCVKCRECIVNCPFNAI 594 Score = 38.5 bits (88), Expect = 0.30, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 18/42 (42%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 I++ + + + +C CG+C + CPV AI Sbjct: 525 HIKNKKCPARECSALIEFVVAEDRCKKCGICFKVCPVGAITW 566 >gi|310827363|ref|YP_003959720.1| anaerobic sulfite reductase subunit C [Eubacterium limosum KIST612] gi|308739097|gb|ADO36757.1| anaerobic sulfite reductase subunit C [Eubacterium limosum KIST612] Length = 326 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 30/88 (34%), Gaps = 12/88 (13%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + G + +++C++C C C R G R Sbjct: 145 CPNDCMKVRMHDFGIMGMTEPQYNKDKCVSCNACVKACS----------RKSTGALRMEN 194 Query: 96 YDI--DMIKCIYCGLCQEACPVDAIVEG 121 Y I D KCI CG C ACPV A Sbjct: 195 YKIVRDESKCIGCGECVLACPVGAWRRS 222 >gi|308271653|emb|CBX28261.1| NADH-quinone oxidoreductase subunit F 2 [uncultured Desulfobacterium sp.] Length = 633 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 10/68 (14%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 AL Y E C C+ C CP +AI E +D KCI CG+C Sbjct: 573 KALFHYEIDAEACTGCRSCAKKCPQEAIAGEKKQPHK----------LDQAKCIKCGICY 622 Query: 111 EACPVDAI 118 +AC DAI Sbjct: 623 DACKFDAI 630 Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 16/40 (40%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 I+ + Y+ID C C C + CP +AI Sbjct: 561 HIKHKKCPAGVCKALFHYEIDAEACTGCRSCAKKCPQEAI 600 >gi|283853097|ref|ZP_06370352.1| hydrogenase, Fe-only [Desulfovibrio sp. FW1012B] gi|283571495|gb|EFC19500.1| hydrogenase, Fe-only [Desulfovibrio sp. FW1012B] Length = 585 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 3/67 (4%) Query: 59 GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115 ++CI C+ CE +C Q + SG +++++ C CG C CPV Sbjct: 149 DMDKCIMCRRCETMCNVVQTCGVLSGVNRGFTAVVAPAFEMNLADTVCTNCGQCVAVCPV 208 Query: 116 DAIVEGP 122 A+VE Sbjct: 209 GALVEHD 215 >gi|182414281|ref|YP_001819347.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutus terrae PB90-1] gi|177841495|gb|ACB75747.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Opitutus terrae PB90-1] Length = 279 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 28/118 (23%), Positives = 38/118 (32%), Gaps = 19/118 (16%) Query: 20 FFLCLRY-FFKAKTTINYPFEKGSTSPRFRGEHALRR--YPNGEERCIACKLCEAICPAQ 76 F LR T YP S R RG + + + C C + Sbjct: 1 MFETLRQSLNVGVATTAYPATPPEVSTRARGRPEIDWPAWQDARPAAAICPTGAINCRDE 60 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134 A + +D+ KCI+CGLC + AI E A TR+ L Sbjct: 61 AGVRTAE--------------LDLGKCIFCGLCADV--DRAIRMTNQCELAVRTRERL 102 >gi|319779236|ref|YP_004130149.1| Electron transport complex protein RnfB [Taylorella equigenitalis MCE9] gi|317109260|gb|ADU92006.1| Electron transport complex protein RnfB [Taylorella equigenitalis MCE9] Length = 201 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 26/92 (28%), Positives = 32/92 (34%), Gaps = 10/92 (10%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E +P L + EE CI C C +CP G + + I Sbjct: 65 EIKPVNPECGVTKPLHKAYILEEHCIGCTKCIQVCPVD---------SIIGANKWMHTVI 115 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 C C LC ACPVD I P+ TE Sbjct: 116 -PDFCTGCELCVLACPVDCIQMNPSLALWTED 146 >gi|257452828|ref|ZP_05618127.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. 3_1_5R] gi|257466806|ref|ZP_05631117.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium gonidiaformans ATCC 25563] gi|315917954|ref|ZP_07914194.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium gonidiaformans ATCC 25563] gi|317059369|ref|ZP_07923854.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. 3_1_5R] gi|313685045|gb|EFS21880.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium sp. 3_1_5R] gi|313691829|gb|EFS28664.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium gonidiaformans ATCC 25563] Length = 1190 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 34/104 (32%), Gaps = 19/104 (18%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI----ESGPRCHDGT--- 90 FE G+ S RG + CI C C +CP AI E + Sbjct: 677 FENGTASFEKRGVAVDVPEWI-VDNCIQCNQCSYVCPHAAIRPFLITEEEKKASPVELIT 735 Query: 91 ---------RRTVRYDIDMIKCIYCGLCQEACPVD--AIVEGPN 123 T R + + C+ CG C CP A+V P Sbjct: 736 KKAVGKGLEDVTYRIQVTPLDCVGCGSCVNVCPAPGKALVMKPI 779 >gi|239904887|ref|YP_002951625.1| Fe hydrogenase [Desulfovibrio magneticus RS-1] gi|239794750|dbj|BAH73739.1| Fe hydrogenase [Desulfovibrio magneticus RS-1] Length = 585 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 3/68 (4%) Query: 59 GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115 ++CI C+ CE +C Q + SG +++++ C CG C CPV Sbjct: 149 DMDKCIMCRRCETMCNDIQTCGVLSGVNRGFTAVVAPAFEMNLADTVCTNCGQCVAVCPV 208 Query: 116 DAIVEGPN 123 A+VE N Sbjct: 209 GALVENDN 216 >gi|238895009|ref|YP_002919743.1| electron transport complex protein RnfC [Klebsiella pneumoniae NTUH-K2044] gi|238547325|dbj|BAH63676.1| electron transport complex protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 753 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 40/112 (35%), Gaps = 13/112 (11%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEKGCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHNLADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 I F E A ++E +R R+E+ R + + R Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEE-----QRAAEAKARFEARQAR-LEREKAAR 474 >gi|237735082|ref|ZP_04565563.1| 4Fe-4S ferredoxin [Mollicutes bacterium D7] gi|229381858|gb|EEO31949.1| 4Fe-4S ferredoxin [Coprobacillus sp. D7] Length = 367 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 11/60 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +++CI C C IC +I ID KC+ CG C CP DAI Sbjct: 191 EQDKCIGCGQCIKICAHNGTSITDHKAS-----------IDHDKCVGCGRCIGVCPKDAI 239 >gi|222111964|ref|YP_002554228.1| 4fe-4S ferredoxin iron-sulfur-binding domain-containing protein [Acidovorax ebreus TPSY] gi|221731408|gb|ACM34228.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidovorax ebreus TPSY] Length = 687 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 34/118 (28%), Gaps = 13/118 (11%) Query: 20 FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79 L L + P + ++RC C C + CPA A+ Sbjct: 519 LELALDHLVTNAPARELPEAIALPKGPSPWGTVVV----DKDRCTLCLSCVSACPAGALQ 574 Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 + C+ CGLC+ CP +AI P E Q + Sbjct: 575 DNPQA---------PQLRFTEQNCVQCGLCERTCPENAIALQPRMLLTPERGQPRVLN 623 Score = 41.6 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 9/55 (16%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C IC A+AI+ + + ++ C+ CG C CP A+ Sbjct: 306 VGCNACVDICSAEAISSDP---------VRQQVVVNPHLCVGCGACTTVCPTGAM 351 Score = 37.8 bits (86), Expect = 0.58, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 34/97 (35%), Gaps = 19/97 (19%) Query: 45 PRFRGEHALRRYPN---GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 + G AL+ + + C C C CP AI ++ Y IDM Sbjct: 164 KGWLGRFALQWTADNPIDLDLCTRCNACVTACPENAIGLD--------------YQIDMT 209 Query: 102 KCIYCGLCQEACPVD-AIVEGPNFEFATETRQELYYD 137 C C +AC V AI E ++ +L D Sbjct: 210 ACTGHRDCVKACAVAGAIRFEREAEVQSQDF-DLVLD 245 >gi|11498558|ref|NP_069786.1| glutamate synthase (gltB) [Archaeoglobus fulgidus DSM 4304] gi|2649642|gb|AAB90287.1| glutamate synthase (gltB) [Archaeoglobus fulgidus DSM 4304] Length = 511 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 18/108 (16%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 ++RCI C++CE C + D +KC+ C C CP +A+V Sbjct: 21 QDRCIRCRVCERQCGFNVHWYDEE---------MDMMREDEMKCVGCQRCAVMCPTNALV 71 Query: 120 EGP---NFEF-ATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 P N++ A TR+ L K++ G ++ D PYR Sbjct: 72 VKPHPGNYKPNANWTRERLQDLKKQAETGG-----VLLTGSGNDKPYR 114 >gi|27381853|ref|NP_773382.1| glutamate synthase small subunit [Bradyrhizobium japonicum USDA 110] gi|27355022|dbj|BAC52007.1| blr6742 [Bradyrhizobium japonicum USDA 110] Length = 599 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 30/105 (28%), Gaps = 20/105 (19%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 K + R + + CI C C ICP IT D +R Sbjct: 475 DVKLALGEAHRCLNCDVQTVFSTSLCIECDACVDICPMDCITFTENGEEPDLRQRLKAPS 534 Query: 98 IDMIK--------------------CIYCGLCQEACPVDAIVEGP 122 + + C++CGLC E CP A Sbjct: 535 LHPDQDLYVSSDLKTGRVMVKDEDVCLHCGLCAERCPTGAWDMQK 579 Score = 34.7 bits (78), Expect = 4.1, Method: Composition-based stats. Identities = 10/23 (43%), Positives = 12/23 (52%) Query: 103 CIYCGLCQEACPVDAIVEGPNFE 125 CI C C + CP+D I N E Sbjct: 500 CIECDACVDICPMDCITFTENGE 522 >gi|306820054|ref|ZP_07453702.1| hydrogenase subunit [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551832|gb|EFM39775.1| hydrogenase subunit [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 503 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 6/66 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQEA 112 EE+CI C C+ CP AI P R I+ KC+ CG+C Sbjct: 148 DEEKCIRCGRCKDNCPYNAIVFFDRPCAAACGVNAIESDYLGRAIINQDKCVTCGMCLVH 207 Query: 113 CPVDAI 118 CP AI Sbjct: 208 CPFGAI 213 Score = 38.5 bits (88), Expect = 0.28, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 13/62 (20%) Query: 61 ERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C C +CP AI++ ID KCI CG C++ CP +AI Sbjct: 119 NNCRKCLAHPCIQVCPVNAISMGQYSTI-----------IDEEKCIRCGRCKDNCPYNAI 167 Query: 119 VE 120 V Sbjct: 168 VF 169 >gi|300931505|ref|ZP_07146822.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 187-1] gi|300460699|gb|EFK24192.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 187-1] Length = 553 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 345 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 402 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 403 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 451 >gi|300723257|ref|YP_003712557.1| putative NADH dehydrogenase subunit/ oxidoreductase [Xenorhabdus nematophila ATCC 19061] gi|297629774|emb|CBJ90382.1| putative NADH dehydrogenase subunit/ oxidoreductase [Xenorhabdus nematophila ATCC 19061] Length = 708 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 1/52 (1%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 CI C LC CPA + + G + + CI CG C CP Sbjct: 377 CIRCGLCVEACPAG-LLPQQLYWFSRGQEHEKAKNHHLFDCIECGACAYVCP 427 Score = 37.4 bits (85), Expect = 0.75, Method: Composition-based stats. Identities = 10/15 (66%), Positives = 10/15 (66%) Query: 100 MIKCIYCGLCQEACP 114 CI CGLC EACP Sbjct: 374 EEACIRCGLCVEACP 388 >gi|290475318|ref|YP_003468206.1| putative NADH dehydrogenase subunit/ oxidoreductase [Xenorhabdus bovienii SS-2004] gi|289174639|emb|CBJ81433.1| putative NADH dehydrogenase subunit/ oxidoreductase [Xenorhabdus bovienii SS-2004] Length = 668 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 1/52 (1%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 CI C LC CPA + + G + + CI CG C CP Sbjct: 377 CIRCGLCVEACPAG-LLPQQLYWFSRGQEHKKAKNHHLFDCIECGACAYVCP 427 Score = 37.4 bits (85), Expect = 0.77, Method: Composition-based stats. Identities = 10/15 (66%), Positives = 10/15 (66%) Query: 100 MIKCIYCGLCQEACP 114 CI CGLC EACP Sbjct: 374 EEACIRCGLCVEACP 388 >gi|258625037|ref|ZP_05719958.1| iron-sulfur cluster-binding protein [Vibrio mimicus VM603] gi|258582670|gb|EEW07498.1| iron-sulfur cluster-binding protein [Vibrio mimicus VM603] Length = 553 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 9/75 (12%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C A+CP +A+ C+ CGLC +ACP + Sbjct: 418 SDCTLCMSCVAVCPTRALHPAGDSPA---------LRFIEQDCVQCGLCVKACPEQVLSA 468 Query: 121 GPNFEFATETRQELY 135 P ++ RQ + Sbjct: 469 TPQLNWSKAARQGVV 483 Score = 40.9 bits (94), Expect = 0.057, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 14/81 (17%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 C+ C CPA A++ E + R I+ C G C ACP +AI + Sbjct: 186 CERCVDACPAGALSSEGSDQTGH------RIQINPYLCQGVGTCATACPTEAIH----YA 235 Query: 126 FA-TETRQELYYDKERLLNNG 145 Q+ ERLL N Sbjct: 236 LPNPTDTQKFI---ERLLANY 253 Score = 33.9 bits (76), Expect = 7.1, Method: Composition-based stats. Identities = 6/23 (26%), Positives = 8/23 (34%) Query: 97 DIDMIKCIYCGLCQEACPVDAIV 119 + C C C CP A+ Sbjct: 414 ECQTSDCTLCMSCVAVCPTRALH 436 >gi|256840652|ref|ZP_05546160.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256737924|gb|EEU51250.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 301 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 26/77 (33%), Gaps = 11/77 (14%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 +E CI C C +CP+ T E R CI CG C + C Sbjct: 16 MTLNIDQESCIKCGKCVRVCPSDIFTQERAGETIGLVRV--------ESCIVCGHCVDVC 67 Query: 114 PVDAIVEGPNFEFATET 130 P ++ EF E Sbjct: 68 PTGSVSHS---EFPPEK 81 Score = 37.4 bits (85), Expect = 0.72, Method: Composition-based stats. Identities = 10/24 (41%), Positives = 13/24 (54%) Query: 91 RRTVRYDIDMIKCIYCGLCQEACP 114 R+ + +ID CI CG C CP Sbjct: 13 RKRMTLNIDQESCIKCGKCVRVCP 36 >gi|225569273|ref|ZP_03778298.1| hypothetical protein CLOHYLEM_05355 [Clostridium hylemonae DSM 15053] gi|225162072|gb|EEG74691.1| hypothetical protein CLOHYLEM_05355 [Clostridium hylemonae DSM 15053] Length = 291 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 24/76 (31%), Gaps = 15/76 (19%) Query: 47 FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 F AL RY E CI C C C E CI C Sbjct: 220 FFNPVALYRYQVEESDCIKCGKCRKTCKMDIKVWEQPNSPE---------------CIRC 264 Query: 107 GLCQEACPVDAIVEGP 122 G C +ACP AI G Sbjct: 265 GDCVKACPTKAIKRGK 280 >gi|289208953|ref|YP_003461019.1| electron transporter subunit C [Thioalkalivibrio sp. K90mix] gi|288944584|gb|ADC72283.1| electron transport complex, RnfABCDGE type, C subunit [Thioalkalivibrio sp. K90mix] Length = 541 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 11/95 (11%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 CI C C A+CPAQ + + + D + CI CG C CP I Sbjct: 372 PCIRCAECAAVCPAQLLPQQLYWQAKAKDF-DAIQDYGLFDCIECGCCAYVCP-SNIPLV 429 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNI 156 + +A + + +E+ +R +S+I R Sbjct: 430 QYYRYA----KNEIWAREK-----ERHKSDIARER 455 >gi|206900301|ref|YP_002250051.1| glutamate synthase [Dictyoglomus thermophilum H-6-12] gi|206739404|gb|ACI18462.1| glutamate synthase [Dictyoglomus thermophilum H-6-12] Length = 502 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 22/65 (33%), Gaps = 9/65 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E +CI CK+C C + R D +C+ C C CP AI Sbjct: 14 DETKCIRCKVCVRQCANDVHEYDEEED---------RIISDNSRCVGCHRCVALCPTKAI 64 Query: 119 VEGPN 123 N Sbjct: 65 TIMRN 69 >gi|194292353|ref|YP_002008260.1| benzoyl-CoA dioxygenase component a [Cupriavidus taiwanensis LMG 19424] gi|193226257|emb|CAQ72206.1| Benzoyl-CoA dioxygenase component A [Cupriavidus taiwanensis LMG 19424] Length = 426 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 11/68 (16%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 ++++ E CI C CEA CP AIT +S Y +D KC C C Sbjct: 7 QVIKQHLIDPEICIRCNTCEATCPVGAITHDS-----------RNYVVDADKCNLCMACI 55 Query: 111 EACPVDAI 118 CP +I Sbjct: 56 SPCPTGSI 63 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 11/23 (47%), Positives = 12/23 (52%) Query: 98 IDMIKCIYCGLCQEACPVDAIVE 120 ID CI C C+ CPV AI Sbjct: 14 IDPEICIRCNTCEATCPVGAITH 36 >gi|187779551|ref|ZP_02996024.1| hypothetical protein CLOSPO_03147 [Clostridium sporogenes ATCC 15579] gi|187773176|gb|EDU36978.1| hypothetical protein CLOSPO_03147 [Clostridium sporogenes ATCC 15579] Length = 631 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 10/63 (15%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 + ++CI C C CP I + ++ I+ KCI CG C ACPV Sbjct: 576 HYEITDKCIGCTKCARGCPVSCIIG----------KVKEKHFINQEKCIKCGNCYSACPV 625 Query: 116 DAI 118 AI Sbjct: 626 GAI 628 >gi|218782910|ref|YP_002434228.1| NADH dehydrogenase (quinone) [Desulfatibacillum alkenivorans AK-01] gi|218764294|gb|ACL06760.1| NADH dehydrogenase (quinone) [Desulfatibacillum alkenivorans AK-01] Length = 618 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 10/66 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L Y + C C LC CP AIT + +D KCI CG+C +A Sbjct: 560 LFHYEIVDGTCTGCGLCARKCPQDAITGAKKE----------THVLDQDKCIKCGICYDA 609 Query: 113 CPVDAI 118 C +AI Sbjct: 610 CKFNAI 615 Score = 41.2 bits (95), Expect = 0.041, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 8/81 (9%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 I + Y+I C CGLC CP DAI Sbjct: 537 MYFRHEYEAHIRDKKCPAGVCKPLFHYEIVDGTCTGCGLCARKCPQDAI--------TGA 588 Query: 130 TRQELYYDKERLLNNGDRWES 150 ++ D+++ + G +++ Sbjct: 589 KKETHVLDQDKCIKCGICYDA 609 >gi|123442265|ref|YP_001006246.1| electron transport complex protein RnfB [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122089226|emb|CAL12072.1| putative iron-sulfur protein [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 207 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 24/78 (30%), Gaps = 10/78 (12%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C C CP AI + + + C C LC CP D Sbjct: 111 FIDEANCIGCTKCIQACPVDAIVGAT----------RAMHTVLPDLCTGCDLCVSPCPTD 160 Query: 117 AIVEGPNFEFATETRQEL 134 I P + +L Sbjct: 161 CIEMIPVATTTANWKWDL 178 >gi|127512996|ref|YP_001094193.1| electron transport complex protein RnfC [Shewanella loihica PV-4] gi|126638291|gb|ABO23934.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella loihica PV-4] Length = 870 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 29/108 (26%), Positives = 42/108 (38%), Gaps = 13/108 (12%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACPVD 116 + CI C C CPAQ + P+ + YD ++ CI CG C CP Sbjct: 382 QPCIRCGECAQACPAQLL-----PQQLFWHAKAQEYDKAASYNLRDCIECGCCSYVCP-S 435 Query: 117 AIVEGPNFEFATET-RQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 I + A RQE K+ L R++S +R + + R Sbjct: 436 DIPLVEYYRVAKSALRQEAEEKKQAELAK-QRFDSRTLR-LEQEKQAR 481 >gi|330015738|ref|ZP_08308240.1| electron transport complex, RnfABCDGE type, C subunit [Klebsiella sp. MS 92-3] gi|328531063|gb|EGF57918.1| electron transport complex, RnfABCDGE type, C subunit [Klebsiella sp. MS 92-3] Length = 565 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 40/112 (35%), Gaps = 13/112 (11%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 336 PQEEKGCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHNLADCIECGACAWVCP-S 393 Query: 117 AIVEGPNF-----EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 I F E A ++E +R R+E+ R + + R Sbjct: 394 NIPLVQYFRQEKAEIAAIRQEE-----QRAAEAKARFEARQAR-LEREKAAR 439 >gi|324014761|gb|EGB83980.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 60-1] Length = 574 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|320658803|gb|EFX26477.1| electron transport complex protein RnfC [Escherichia coli O55:H7 str. USDA 5905] Length = 631 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|302341926|ref|YP_003806455.1| molybdopterin oxidoreductase [Desulfarculus baarsii DSM 2075] gi|301638539|gb|ADK83861.1| molybdopterin oxidoreductase [Desulfarculus baarsii DSM 2075] Length = 778 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 4/68 (5%) Query: 59 GEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 ++C+ C C A C AI + G R +D +C CG C +ACP Sbjct: 142 DFKKCVMCGRCVAACNEIQVNMAIPLPFGRREDRPLPAGWLPLVDHDRCTQCGECVQACP 201 Query: 115 VDAIVEGP 122 V A+ E Sbjct: 202 VGALTEKK 209 Score = 37.4 bits (85), Expect = 0.73, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 21/73 (28%), Gaps = 4/73 (5%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93 I PF + P G L +RC C C CP A+T + T Sbjct: 165 IPLPFGRREDRPLPAGWLPLV----DHDRCTQCGECVQACPVGALTEKKAKGRGRSWELT 220 Query: 94 VRYDIDMIKCIYC 106 + C Sbjct: 221 KVRTTCPHCGVGC 233 >gi|302336898|ref|YP_003802104.1| NADH dehydrogenase (quinone) [Spirochaeta smaragdinae DSM 11293] gi|301634083|gb|ADK79510.1| NADH dehydrogenase (quinone) [Spirochaeta smaragdinae DSM 11293] Length = 632 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 35/99 (35%), Gaps = 15/99 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 LRYF + + ++ AL + E C C C CP AI+ E Sbjct: 546 TLRYFRQEYESHVV-DKRCPVGAC----KALSDFVIDESLCKGCTACAKACPVGAISGE- 599 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 + + ID +CI CG C C AI G Sbjct: 600 ---------KKAPHTIDTERCIRCGACMATCRFGAIRRG 629 >gi|301329557|ref|ZP_07222340.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 78-1] gi|300844326|gb|EFK72086.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 78-1] Length = 576 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|300936047|ref|ZP_07150994.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 21-1] gi|300458773|gb|EFK22266.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 21-1] Length = 578 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|217966522|ref|YP_002352028.1| 4Fe-4S ferredoxin, iron-sulphur binding, conserved site [Dictyoglomus turgidum DSM 6724] gi|217335621|gb|ACK41414.1| 4Fe-4S ferredoxin, iron-sulphur binding, conserved site [Dictyoglomus turgidum DSM 6724] Length = 559 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 3/102 (2%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV 94 FE + RF +++ RC+ C+ C C A E + Sbjct: 121 FEFPTYERRFPVDNSHEFIMMDHNRCVLCRRCVRACSEVAGHFVLGEMERGIDTMIIADM 180 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 + C CGLC + CP AI++ + E + E+ Y Sbjct: 181 DVPLGNSSCTSCGLCAQVCPTGAIIDKRSSYLGREVQSEIIY 222 >gi|209809197|ref|YP_002264735.1| NAD-dependent formate dehydrogenase alpha subunit [Aliivibrio salmonicida LFI1238] gi|208010759|emb|CAQ81152.1| NAD-dependent formate dehydrogenase alpha subunit [Aliivibrio salmonicida LFI1238] Length = 1385 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 10/70 (14%) Query: 59 GEERCIACKLCEAICPAQAITI----------ESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 RCI+C C C + + + R YD+ C+ CG Sbjct: 616 DANRCISCGQCVEACNEKGVHGVLSFMKNEDGTNASRPECRAGFEHGYDMGNSNCVQCGA 675 Query: 109 CQEACPVDAI 118 C +ACPV A+ Sbjct: 676 CIQACPVGAL 685 >gi|84514634|ref|ZP_01001998.1| formate dehydrogenase, alpha subunit [Loktanella vestfoldensis SKA53] gi|84511685|gb|EAQ08138.1| formate dehydrogenase, alpha subunit [Loktanella vestfoldensis SKA53] Length = 921 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 25/130 (19%), Positives = 38/130 (29%), Gaps = 23/130 (17%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 L + GA + + F E + CI C LC Sbjct: 112 LWDMAGAQGVAVSRFPAKA-------EHIPLLDDSH-----VAMSVNLDACIQCGLCVRA 159 Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDM----IKCIYCGLCQEACPVDAI------VEGP 122 C + + G +D+D C+ CG C +ACP A+ E Sbjct: 160 CR-EVQVNDVIGMAGRGGTAYPVFDMDDPMGGSSCVACGECVQACPTGALLPATVTDENQ 218 Query: 123 NFEFATETRQ 132 + A R+ Sbjct: 219 QGDTADYDRE 228 >gi|311694180|gb|ADP97053.1| electron transport complex, RnfABCDGE type, C subunit [marine bacterium HP15] Length = 580 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 25/103 (24%), Positives = 43/103 (41%), Gaps = 20/103 (19%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACPVD 116 + CI C C +A +E P+ + ++ +++ CI CG C CP Sbjct: 338 QPCIRCGQCA-----EACPMELLPQQLFWHAKATEFEKAEHLNLFDCIECGACSYVCP-S 391 Query: 117 AIVEGPNFEFA-TETR----QELYYDKERLLNNGDRWESEIVR 154 +I + FA E R ++L D+ R +R+E+ R Sbjct: 392 SIPLVQYYRFAKGEIRAQQAEQLKADRAR-----ERFEARQAR 429 >gi|289423109|ref|ZP_06424924.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Peptostreptococcus anaerobius 653-L] gi|289156440|gb|EFD05090.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Peptostreptococcus anaerobius 653-L] Length = 1177 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 28/87 (32%), Gaps = 18/87 (20%) Query: 57 PNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRYDIDMI- 101 + CI C C +CP A + + ++Y I + Sbjct: 684 EWQIDNCIQCNQCSLVCPHAAIRPFLLTEEEAKNAPENFNTKKAMGKGLENLQYRIQVSA 743 Query: 102 -KCIYCGLCQEACP--VDAIVEGPNFE 125 C CG C + CP A+V P E Sbjct: 744 MDCTGCGNCADVCPAKTKALVMKPMEE 770 >gi|288927506|ref|ZP_06421353.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Prevotella sp. oral taxon 317 str. F0108] gi|288330340|gb|EFC68924.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Prevotella sp. oral taxon 317 str. F0108] Length = 1190 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 24/82 (29%), Gaps = 16/82 (19%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIE---------------SGPRCHDGTRR 92 RG A E CI C C +CP I Sbjct: 679 RGVEAFNPEWT-AENCIQCNKCAYVCPHACIRPFVLDEEEMKSFEDATLEMKVPKPMAGM 737 Query: 93 TVRYDIDMIKCIYCGLCQEACP 114 R + ++ C+ CG C + CP Sbjct: 738 NFRIQVSVLDCVGCGNCADVCP 759 >gi|284051681|ref|ZP_06381891.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Arthrospira platensis str. Paraca] gi|291570294|dbj|BAI92566.1| pyruvate flavodoxin oxidoreductase [Arthrospira platensis NIES-39] Length = 1193 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 40/146 (27%), Gaps = 36/146 (24%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPR 85 TS + A + C+ C C +CP A Sbjct: 667 PTGTSKWEKRNVAQEIPVWDADVCVQCGKCIMVCPHAVIRGKAYDESALNGAPETFKTTA 726 Query: 86 CHDGTRRTVRYDID--MIKCIYCGLCQEACP--------VDAIVEGPNFEFATETRQ--E 133 D ++ I C CG+C + CP AI R E Sbjct: 727 VRDKAFEGQKFTIQVSPEDCTGCGICVDVCPAKNKSMPSKKAINMEYQPPIRATERDNWE 786 Query: 134 LYYDKERLLNNGDRWESEIVRNIVTD 159 + + L N DR RN+ +D Sbjct: 787 FFLN----LPNPDR------RNLRSD 802 >gi|268589519|ref|ZP_06123740.1| electron transport complex protein RnfC [Providencia rettgeri DSM 1131] gi|291315188|gb|EFE55641.1| electron transport complex protein RnfC [Providencia rettgeri DSM 1131] Length = 781 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 40/109 (36%), Gaps = 19/109 (17%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C LC CPA + + G ++ CI CG C CP I Sbjct: 378 CIRCGLCVDACPAG-LLPQQLYWFSKGDEHEKAQKHNLFDCIECGACAYVCP-SNIPLVQ 435 Query: 123 NF--------EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + E A E R+ + +L R+E++ +R + D R Sbjct: 436 YYRQEKAEIREIAQEERRAA---EAKL-----RFEAKQLR-MERDKQAR 475 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 9/15 (60%), Positives = 10/15 (66%) Query: 100 MIKCIYCGLCQEACP 114 CI CGLC +ACP Sbjct: 375 EEACIRCGLCVDACP 389 >gi|260911664|ref|ZP_05918244.1| pyruvate-ferredoxin oxidoreductase [Prevotella sp. oral taxon 472 str. F0295] gi|260634212|gb|EEX52322.1| pyruvate-ferredoxin oxidoreductase [Prevotella sp. oral taxon 472 str. F0295] Length = 1190 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 24/82 (29%), Gaps = 16/82 (19%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIE---------------SGPRCHDGTRR 92 RG A E CI C C +CP I Sbjct: 679 RGVEAFNPEWT-AENCIQCNKCAYVCPHACIRPFVLDEEEMKGFEDATLEMKVPKPMAGM 737 Query: 93 TVRYDIDMIKCIYCGLCQEACP 114 R + ++ C+ CG C + CP Sbjct: 738 NFRIQVSVLDCVGCGNCADVCP 759 >gi|238762649|ref|ZP_04623619.1| Electron transport complex protein rnfB [Yersinia kristensenii ATCC 33638] gi|238699294|gb|EEP92041.1| Electron transport complex protein rnfB [Yersinia kristensenii ATCC 33638] Length = 207 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 25/78 (32%), Gaps = 10/78 (12%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 EE CI C C CP AI + + + C C LC CP D Sbjct: 111 FIDEENCIGCTKCIQACPVDAIVGAT----------RAMHTVLPDLCTGCDLCVSPCPTD 160 Query: 117 AIVEGPNFEFATETRQEL 134 I P + +L Sbjct: 161 CIEMIPVATTTANWKWDL 178 >gi|229497131|ref|ZP_04390834.1| ferredoxin [Porphyromonas endodontalis ATCC 35406] gi|229315948|gb|EEN81878.1| ferredoxin [Porphyromonas endodontalis ATCC 35406] Length = 320 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 27/86 (31%), Gaps = 11/86 (12%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P + + + CI C C CP AIT+E+ Sbjct: 194 PKNRRVFVSCVNKDKGGVAMKACKNACIGCGKCAKECPFGAITVENNLAY---------- 243 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGP 122 ID KC C C CP AI E Sbjct: 244 -IDHTKCRLCRKCVAVCPTHAIHEEN 268 Score = 41.6 bits (96), Expect = 0.039, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 8/81 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCH--------DGTRRTVRYDIDMIKCIYCGLCQ 110 +++C +C C CP I + + + + V CI CG C Sbjct: 168 DQDKCTSCGACVKACPKTIIELRKKGPKNRRVFVSCVNKDKGGVAMKACKNACIGCGKCA 227 Query: 111 EACPVDAIVEGPNFEFATETR 131 + CP AI N + T+ Sbjct: 228 KECPFGAITVENNLAYIDHTK 248 >gi|218130267|ref|ZP_03459071.1| hypothetical protein BACEGG_01855 [Bacteroides eggerthii DSM 20697] gi|217987551|gb|EEC53879.1| hypothetical protein BACEGG_01855 [Bacteroides eggerthii DSM 20697] Length = 1185 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 32/90 (35%), Gaps = 15/90 (16%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGP 84 E+G+ RG A N E CI C C +CP A + Sbjct: 667 EQGTAKYEKRGVAAFVPEWN-PENCIQCNKCAYVCPHASIRPFVLDAEEQKGAEFAQLKA 725 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 T R +D++ C+ CG C + CP Sbjct: 726 VGKAFDGMTFRMQVDVLDCLGCGNCADICP 755 >gi|188589483|ref|YP_001920962.1| pyridine nucleotide-disulphide oxidoreductase family protein [Clostridium botulinum E3 str. Alaska E43] gi|188499764|gb|ACD52900.1| pyridine nucleotide-disulphide oxidoreductase family protein [Clostridium botulinum E3 str. Alaska E43] Length = 896 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 30/135 (22%), Positives = 45/135 (33%), Gaps = 15/135 (11%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 K T FE + H + C C C A I + +D Sbjct: 223 RKITREEAFEIIKRAEENGLMHQIPNADGPGNTHAICNCCG--CSCYATRIAGMFQNNDM 280 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVE-------GPNFEFATETRQELYYDKERLL 142 R +D KC+ CG C + CPV+A+ P E + R++ Y+ E Sbjct: 281 VRSNYVSKVDKDKCVACGECVQVCPVNALKLGQKLCTKTPIVE---KKREDFAYNTEW-- 335 Query: 143 NNGDRWESEIVRNIV 157 D+W + N Sbjct: 336 -GEDKWNVDYRINRE 349 Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 3/86 (3%) Query: 78 ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 T E + + +D +CI CG C C DAI ++ + T +EL Sbjct: 812 FTEEQMKKETERCLGCGATTVDQDQCIGCGACTTRCKFDAITLYRKYDAQSVTIKEL--- 868 Query: 138 KERLLNNGDRWESEIVRNIVTDSPYR 163 K +++ N + + I + S R Sbjct: 869 KPKVIKNIIKRKFVIKARKIKKSFKR 894 >gi|160624920|gb|ABO42543.2| hydrogenase [Clostridium butyricum] Length = 574 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 3/78 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPV 115 +C+ C C A C + T R+ + D C+ CG C ACPV Sbjct: 143 DRSKCVLCGRCVAACKEKTGTGNIEIAGKGPDRKVQAIEGKCFDETNCLLCGQCVAACPV 202 Query: 116 DAIVEGPNFEFATETRQE 133 A+ E P+ + E ++ Sbjct: 203 AALNEKPHIDRVKEALED 220 >gi|154498756|ref|ZP_02037134.1| hypothetical protein BACCAP_02747 [Bacteroides capillosus ATCC 29799] gi|150272146|gb|EDM99350.1| hypothetical protein BACCAP_02747 [Bacteroides capillosus ATCC 29799] Length = 600 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 15/99 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 L++ F+ + + ++ L RY +C C LC CPA AI+ Sbjct: 517 TLKH-FRDEYVAHVVEKRCPAGVCKN----LLRYTIDPAKCKGCTLCAKNCPAGAISG-- 569 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 + ID KCI CG+C + C AI++G Sbjct: 570 --------AVRAPHVIDQSKCIKCGVCMDNCRFSAILKG 600 >gi|332703001|ref|ZP_08423089.1| response regulator receiver protein [Desulfovibrio africanus str. Walvis Bay] gi|332553150|gb|EGJ50194.1| response regulator receiver protein [Desulfovibrio africanus str. Walvis Bay] Length = 1143 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 27/87 (31%), Gaps = 7/87 (8%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI-------TIESGPRCHDGTRRTVRY 96 F R RCI C +C +CP + T S Y Sbjct: 98 PGEFHAVARKRSGFVDPSRCIGCGICAEVCPVRVKDEFNAGLTERSAIHLPVPQAIPNHY 157 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPN 123 +D+ C C C +ACP A+ Sbjct: 158 VVDLDNCQRCWQCHKACPTGAVDFKFE 184 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 9/58 (15%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 C C C +CP A ++++ R +D + C CG C CP A Sbjct: 1072 HTYCSLCGRCIDVCPYGARSMDTD---------HQRVVVDELLCQGCGACAAVCPNSA 1120 Score = 35.1 bits (79), Expect = 3.2, Method: Composition-based stats. Identities = 7/31 (22%), Positives = 12/31 (38%) Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 + ++ C CG C + CP A + Sbjct: 1066 MVAEVRHTYCSLCGRCIDVCPYGARSMDTDH 1096 >gi|327313771|ref|YP_004329208.1| pyruvate synthase [Prevotella denticola F0289] gi|326945207|gb|AEA21092.1| pyruvate synthase [Prevotella denticola F0289] Length = 1191 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 35/123 (28%), Gaps = 21/123 (17%) Query: 12 FLKEFVGAFFLCLRYFFK-----AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIAC 66 F+KE V K T++ + G+ + RG A E CI C Sbjct: 637 FVKELVRPMNAQAGDLLKVSDFVKHNTVDGTWSVGTAAYDKRGVAAFVPTW-DAENCIQC 695 Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK---------------CIYCGLCQE 111 C +CP I DI K C CG C + Sbjct: 696 NKCSFVCPHACIRPFVLDEQEKAGFNDTTLDILAPKQLKGMQFRIGVSVLDCTGCGNCAD 755 Query: 112 ACP 114 CP Sbjct: 756 VCP 758 >gi|323940294|gb|EGB36486.1| electron transporter [Escherichia coli E482] Length = 631 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLFWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|320120380|gb|ADW16133.1| hypothetical protein HMPREF0389_01687 [Filifactor alocis ATCC 35896] Length = 1172 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 28/86 (32%), Gaps = 14/86 (16%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT---IESGPRCHDGTR-------- 91 TS + A++ E C+ C C +CP I + G + Sbjct: 664 TSQYEKRGIAVKVPCWNPENCVQCNQCSFVCPHAVIRPFLMTEEETKRYGAKGIPANGKG 723 Query: 92 ---RTVRYDIDMIKCIYCGLCQEACP 114 R I + C CG C + CP Sbjct: 724 LEGYRYRIQISPLDCTGCGNCADVCP 749 >gi|317473756|ref|ZP_07933037.1| ferredoxin oxidoreductase [Bacteroides eggerthii 1_2_48FAA] gi|316910013|gb|EFV31686.1| ferredoxin oxidoreductase [Bacteroides eggerthii 1_2_48FAA] Length = 1185 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 32/90 (35%), Gaps = 15/90 (16%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGP 84 E+G+ RG A N E CI C C +CP A + Sbjct: 667 EQGTAKYEKRGVAAFVPEWN-PENCIQCNKCAYVCPHASIRPFVLDAEEQKGAEFAQLKA 725 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 T R +D++ C+ CG C + CP Sbjct: 726 VGKAFDGMTFRMQVDVLDCLGCGNCADICP 755 >gi|312136853|ref|YP_004004190.1| 4fe-4S ferredoxin iron-sulfur binding domain protein [Methanothermus fervidus DSM 2088] gi|311224572|gb|ADP77428.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanothermus fervidus DSM 2088] Length = 123 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 37/110 (33%), Gaps = 7/110 (6%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + + T+ T + G L E+C C +C +CP Sbjct: 4 ILRIVKEAAKNLGSKVFTLIPKDMDEITKRYWLGRPTLI-----PEKCNGCSICAIMCPV 58 Query: 76 QAITIESGPRCHDGTRRT--VRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +AI + G R+ D +CIYCGLC E C AI Sbjct: 59 KAINMVVVGERVVGKRKVPLKNPKFDYNRCIYCGLCSEVCKFGAIKIKKE 108 >gi|331673198|ref|ZP_08373966.1| electron transport complex protein RnfC [Escherichia coli TA280] gi|331069396|gb|EGI40783.1| electron transport complex protein RnfC [Escherichia coli TA280] Length = 608 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|300927478|ref|ZP_07143191.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 182-1] gi|300416582|gb|EFJ99892.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 182-1] Length = 575 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|298675342|ref|YP_003727092.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein [Methanohalobium evestigatum Z-7303] gi|298288330|gb|ADI74296.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanohalobium evestigatum Z-7303] Length = 447 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 34/87 (39%), Gaps = 4/87 (4%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 EK + L + C C LC+ ICP AI G + + I Sbjct: 192 EKEPSPTDPSPFEQLMVDEDE---CDYCMLCQDICPEDAIK-VKGKKPCEPPAIEGEVHI 247 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFE 125 D KC CG C+E CP DA+ FE Sbjct: 248 DEDKCTRCGWCREVCPYDAVEIKKPFE 274 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 1/74 (1%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 +RC C LC ICP QA+ + G +D+ KC +CG+C + CPV+ Sbjct: 43 DYDYKRCTGCGLCVKICPTQALELGPMHEIATGMDAPPV-TLDIEKCTFCGMCAKFCPVN 101 Query: 117 AIVEGPNFEFATET 130 A + E +E Sbjct: 102 AFKMEISGEVPSED 115 Score = 42.4 bits (98), Expect = 0.023, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 28/81 (34%), Gaps = 10/81 (12%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P++ F GE L+ C+ C +CPA + Sbjct: 262 CPYDAVEIKKPFEGEITLKENNIKRCDPHGCQACFNVCPAHLWYVPEDKNIA-------- 313 Query: 96 YDIDMIKCIYCGLCQEACPVD 116 I CIYCG C+ ACP + Sbjct: 314 --IKEDYCIYCGACENACPEN 332 Score = 42.4 bits (98), Expect = 0.024, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 2/62 (3%) Query: 59 GEERCIACKLCEAICPAQAITIE--SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E+C C +C CP A +E D Y C+ C LC+ +CP D Sbjct: 84 DIEKCTFCGMCAKFCPVNAFKMEISGEVPSEDSYPEFDSYVKINNNCLPCLLCESSCPED 143 Query: 117 AI 118 AI Sbjct: 144 AI 145 Score = 40.9 bits (94), Expect = 0.069, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 2/60 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+C C LC C A + + +D +C YC LCQ+ CP DAI Sbjct: 171 DTEKCNLCGLCSHFC--DAFIMLEKEPSPTDPSPFEQLMVDEDECDYCMLCQDICPEDAI 228 >gi|293374451|ref|ZP_06620774.1| sulfite reductase, subunit C [Turicibacter sanguinis PC909] gi|292646937|gb|EFF64924.1| sulfite reductase, subunit C [Turicibacter sanguinis PC909] Length = 321 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 27/83 (32%), Gaps = 8/83 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + + G + ++RCI+C C C +A S R Sbjct: 145 CPNDCIKARMQDFGIIGMTMPQYDKDRCISCGACVRACKKKATGALSAENFKVLRDR--- 201 Query: 96 YDIDMIKCIYCGLCQEACPVDAI 118 KCI CG C CP A Sbjct: 202 -----SKCIGCGECVIQCPTAAW 219 >gi|270297045|ref|ZP_06203244.1| NADH:ubiquinone oxidoreductase [Bacteroides sp. D20] gi|270273032|gb|EFA18895.1| NADH:ubiquinone oxidoreductase [Bacteroides sp. D20] Length = 635 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 24/71 (33%), Positives = 29/71 (40%), Gaps = 10/71 (14%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R +L Y E CI C LC CPA AI + + I+ KCI CG Sbjct: 572 RQCKSLLTYTINPELCIGCHLCFKHCPADAILGD----------VRKPHVINPDKCIKCG 621 Query: 108 LCQEACPVDAI 118 +C C AI Sbjct: 622 MCMARCKFKAI 632 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 8/70 (11%) Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 + + + Y I+ CI C LC + CP DAI+ + Sbjct: 555 NFYDEYVKHVREKTCRARQCKSLLTYTINPELCIGCHLCFKHCPADAIL--------GDV 606 Query: 131 RQELYYDKER 140 R+ + ++ Sbjct: 607 RKPHVINPDK 616 >gi|257094088|ref|YP_003167729.1| putative glutamate synthase (NADPH) small subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046612|gb|ACV35800.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 540 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 20/59 (33%), Gaps = 9/59 (15%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C +CP A+ R+ + C CG+C CP AI Sbjct: 486 NCFECDNCYGVCPDNAVIKLGPGN---------RFQFNYDYCKGCGMCVAECPCGAIKM 535 >gi|213582925|ref|ZP_03364751.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 456 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 31/102 (30%), Gaps = 14/102 (13%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + + CI CG C CP Sbjct: 259 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP-- 315 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158 N RQ E+ N R E + Sbjct: 316 -----SNIPLVQYFRQ------EKAEINAIRLEEKRAAEAKA 346 >gi|170755927|ref|YP_001780817.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum B1 str. Okra] gi|169121139|gb|ACA44975.1| pyruvate ferredoxin oxidoreductase [Clostridium botulinum B1 str. Okra] Length = 1172 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 43/126 (34%), Gaps = 24/126 (19%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA---QAITIESGPRCHDGTRRTV--- 94 G+TS RG + ++CI C C ICP +A + + + Sbjct: 668 GTTSYEKRGIAVMIPEWQ-IDKCIQCNQCSYICPHSVIRAYLLNKDEKEKSPSAFETKKA 726 Query: 95 ----------RYDIDMIKCIYCGLCQEACPVD--AIVEGP---NFEFATETRQ--ELYYD 137 R I + C CG C + CP A++ E +E + Sbjct: 727 TGKGLEELGYRIQISPLDCTGCGNCADVCPAPGKALIMKNAEEQIEMQSENWEFGLNITT 786 Query: 138 KERLLN 143 KE L++ Sbjct: 787 KENLMD 792 >gi|167757520|ref|ZP_02429647.1| hypothetical protein CLORAM_03070 [Clostridium ramosum DSM 1402] gi|167702517|gb|EDS17096.1| hypothetical protein CLORAM_03070 [Clostridium ramosum DSM 1402] Length = 371 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 11/60 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +++CI C C IC +I ID KC+ CG C CP DAI Sbjct: 195 EQDKCIGCGQCIKICAHNGTSITDHKAS-----------IDHDKCVGCGRCIGVCPKDAI 243 >gi|158319965|ref|YP_001512472.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs] gi|158140164|gb|ABW18476.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs] Length = 635 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 15/99 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 L+Y FK + + ++ + Y +C+ C +C +CP AI Sbjct: 546 TLKY-FKHEYEAHVREDRCPAGVC----KSFMTYTIFPSKCVGCGVCARVCPVHAIRGVV 600 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 Y ID CI CG C + C +AI + Sbjct: 601 KKP----------YHIDQATCIKCGACMDQCRFEAIEKT 629 >gi|327401004|ref|YP_004341843.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein [Archaeoglobus veneficus SNP6] gi|327316512|gb|AEA47128.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Archaeoglobus veneficus SNP6] Length = 254 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 35/83 (42%), Gaps = 14/83 (16%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P E F G + C C +C ICP+ AI+++ + Sbjct: 152 CPEEAIYVEKPFSGSVIVNDD-----ACQGCGVCCEICPSMAISLQD---------PSKS 197 Query: 96 YDIDMIKCIYCGLCQEACPVDAI 118 +ID +CIYCG C ACP +AI Sbjct: 198 VEIDEDRCIYCGACSNACPTNAI 220 Score = 40.9 bits (94), Expect = 0.064, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 8/75 (10%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R L +E CI C C CP +AI +E + ++ C CG Sbjct: 127 RNAIMLGGRMRDDELCIYCGACSKACPEEAIYVEK--------PFSGSVIVNDDACQGCG 178 Query: 108 LCQEACPVDAIVEGP 122 +C E CP AI Sbjct: 179 VCCEICPSMAISLQD 193 Score = 39.3 bits (90), Expect = 0.20, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 31/77 (40%), Gaps = 3/77 (3%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R R +RC+ C+LC CP AI + G V ID Sbjct: 15 LYKIIREGVGKRVLVYNVQRCVGCELCSTACPKNAIKLNPPASVKLGYPPVV---IDAET 71 Query: 103 CIYCGLCQEACPVDAIV 119 CI CG+C E C ++AI Sbjct: 72 CILCGICSEVCLLNAIN 88 Score = 37.8 bits (86), Expect = 0.51, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 37/89 (41%), Gaps = 3/89 (3%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH--DGTRRT 93 P +P + E CI C +C +C AI + +G + + Sbjct: 45 CPKNAIKLNPPASVKLGYPPVVIDAETCILCGICSEVCLLNAINVYAGDKPTRLYSPKYR 104 Query: 94 VRYDIDMIKC-IYCGLCQEACPVDAIVEG 121 + D+ KC C +C+++CP +AI+ G Sbjct: 105 AIFLADLNKCPPQCTVCKDSCPRNAIMLG 133 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 13/60 (21%) Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 C +C+ CP AI + R CIYCG C +ACP +AI F Sbjct: 117 QCTVCKDSCPRNAIMLGGRMRDD-------------ELCIYCGACSKACPEEAIYVEKPF 163 >gi|325860047|ref|ZP_08173174.1| pyruvate synthase [Prevotella denticola CRIS 18C-A] gi|325482573|gb|EGC85579.1| pyruvate synthase [Prevotella denticola CRIS 18C-A] Length = 1191 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 35/123 (28%), Gaps = 21/123 (17%) Query: 12 FLKEFVGAFFLCLRYFFK-----AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIAC 66 F+KE V K T++ + G+ + RG A E CI C Sbjct: 637 FVKELVRPMNAQAGDLLKVSDFVKHNTVDGTWSVGTAAYDKRGVAAFVPTW-DAENCIQC 695 Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK---------------CIYCGLCQE 111 C +CP I DI K C CG C + Sbjct: 696 NKCSFVCPHACIRPFVLDEQEKAGFNDTTLDILAPKQLKGMQFRIGVSVLDCTGCGNCAD 755 Query: 112 ACP 114 CP Sbjct: 756 VCP 758 >gi|302391154|ref|YP_003826974.1| Na-translocating NADH-quinone reductase subunit A [Acetohalobium arabaticum DSM 5501] gi|302203231|gb|ADL11909.1| Na-translocating NADH-quinone reductase subunit A [Acetohalobium arabaticum DSM 5501] Length = 472 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 18/58 (31%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 E CI C CE CP I + + CI C LC CP Sbjct: 391 HGEERACIFCGYCEDACPVDIIPHLVERYTAQSSVDEELIRYGIFDCIECNLCTFVCP 448 Score = 38.5 bits (88), Expect = 0.34, Method: Composition-based stats. Identities = 11/18 (61%), Positives = 14/18 (77%) Query: 103 CIYCGLCQEACPVDAIVE 120 CI+CG C++ACPVD I Sbjct: 397 CIFCGYCEDACPVDIIPH 414 >gi|257064958|ref|YP_003144630.1| NADH:ubiquinone oxidoreductase chain I-like protein [Slackia heliotrinireducens DSM 20476] gi|256792611|gb|ACV23281.1| NADH:ubiquinone oxidoreductase chain I-like protein [Slackia heliotrinireducens DSM 20476] Length = 395 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 6/65 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI+C++C CP AI G D C+ C C++ CP +A+ Sbjct: 292 DPDTCISCRMCATFCPTGAIQKFDDEDGTIGI------DHYPGDCVRCRCCEDICPSNAL 345 Query: 119 VEGPN 123 Sbjct: 346 TLYDE 350 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 11/53 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C C + AI+I++ I +CI CG C CP A+ Sbjct: 36 CMRCADACTSGAISIQNNELV-----------ISPERCIGCGTCATVCPTCAL 77 Score = 33.9 bits (76), Expect = 6.9, Method: Composition-based stats. Identities = 11/29 (37%), Positives = 12/29 (41%) Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 R ID CI C +C CP AI Sbjct: 284 RLWGHVVIDPDTCISCRMCATFCPTGAIQ 312 >gi|323698184|ref|ZP_08110096.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Desulfovibrio sp. ND132] gi|323458116|gb|EGB13981.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Desulfovibrio desulfuricans ND132] Length = 776 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 6/60 (10%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C +C+ +CP AI P +D KCI CG C +ACP Sbjct: 718 CRDCYICDTLCPQNAIKRNELPDGGFER------VVDPDKCIACGFCADACPCGIWDMKN 771 >gi|320354225|ref|YP_004195564.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Desulfobulbus propionicus DSM 2032] gi|320122727|gb|ADW18273.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Desulfobulbus propionicus DSM 2032] Length = 617 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/40 (42%), Positives = 20/40 (50%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 IE R +R+DID +C CG C ACPV AI Sbjct: 545 HIEDHKCPAGACRALIRFDIDPARCTGCGACLRACPVAAI 584 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 10/67 (14%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 AL R+ RC C C CP AI+ E ID CI CG C++ Sbjct: 558 ALIRFDIDPARCTGCGACLRACPVAAISGEKKQPHA----------IDQQLCIQCGSCRQ 607 Query: 112 ACPVDAI 118 AC +A+ Sbjct: 608 ACKFEAV 614 >gi|304315261|ref|YP_003850408.1| F420-non-reducing hydrogenase, subunit B, polyferredoxin [Methanothermobacter marburgensis str. Marburg] gi|313104135|sp|P60232|MVHB_METTM RecName: Full=Polyferredoxin protein mvhB gi|302588720|gb|ADL59095.1| F420-non-reducing hydrogenase, subunit B, polyferredoxin [Methanothermobacter marburgensis str. Marburg] Length = 412 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ CI C +C CP A+ SG + + ++++D CI C C EACP D I Sbjct: 173 DEDTCIKCGVCAQTCPWNAVY-ISGKKPEKRAKEIRKFELDEEACIGCNTCVEACPGDFI 231 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 1/65 (1%) Query: 60 EERCIACKLCEAICPAQAIT-IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C C CP A++ ++ + R + C CG C EACP D + Sbjct: 322 FAMCTRCGACTMACPKGALSLVDMDKVIDGEVVKRKRVQYNPALCDQCGDCIEACPYDML 381 Query: 119 VEGPN 123 Sbjct: 382 KLTDE 386 Score = 42.4 bits (98), Expect = 0.023, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 1/61 (1%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C+ C+ C ICP I +E I + C+ CG+C CPVDAI Sbjct: 104 QGFCVMCQKCVDICPVGVIGVEGIKEPAKVELEIEGP-IFIADCVGCGMCVPECPVDAIT 162 Query: 120 E 120 Sbjct: 163 L 163 Score = 41.2 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 9/60 (15%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C+ C +C CP AIT+E + +ID CI CG+C + CP +A+ Sbjct: 145 DCVGCGMCVPECPVDAITLE---------KVGGVIEIDEDTCIKCGVCAQTCPWNAVYIS 195 Score = 37.4 bits (85), Expect = 0.68, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 22/65 (33%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 E +C C ICP AI + + V + C CG C ACP A Sbjct: 280 WDEGKCDFIGACANICPNDAIRVVTREGMKLPDNEKVDEEPSFAMCTRCGACTMACPKGA 339 Query: 118 IVEGP 122 + Sbjct: 340 LSLVD 344 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 23/66 (34%), Gaps = 4/66 (6%) Query: 52 ALRRYPNGEERCIACK---LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 A+ P C C C CP A+ IE G R + KC CG Sbjct: 23 AIEVTPEDVIYCDICGGEPKCVDACPTGALKIEDLVVDEAGNT-QGRIVFNPDKCNECGD 81 Query: 109 CQEACP 114 C E CP Sbjct: 82 CVEVCP 87 Score = 35.1 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 17/64 (26%), Gaps = 12/64 (18%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 C C C CP + + G CI C C ACP Sbjct: 360 QYNPALCDQCGDCIEACPYDMLKLTDEKVPLKGF------------CILCDQCIPACPKG 407 Query: 117 AIVE 120 A+ Sbjct: 408 ALSL 411 Score = 34.7 bits (78), Expect = 4.2, Method: Composition-based stats. Identities = 11/23 (47%), Positives = 11/23 (47%) Query: 101 IKCIYCGLCQEACPVDAIVEGPN 123 CI CG CQ CP AI P Sbjct: 7 EDCIRCGACQGTCPTAAIEVTPE 29 Score = 34.3 bits (77), Expect = 5.1, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 9/70 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++C C C +CP Q + ++ G C+ C C + CPV I Sbjct: 72 NPDKCNECGDCVEVCPPQILKLDEGKVKKIPL---------QGFCVMCQKCVDICPVGVI 122 Query: 119 VEGPNFEFAT 128 E A Sbjct: 123 GVEGIKEPAK 132 >gi|301309723|ref|ZP_07215662.1| putative 4Fe-4S binding domain protein [Bacteroides sp. 20_3] gi|300831297|gb|EFK61928.1| putative 4Fe-4S binding domain protein [Bacteroides sp. 20_3] Length = 286 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 27/77 (35%), Gaps = 11/77 (14%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 +E CI C C +CP+ T E R CI CG C + C Sbjct: 1 MTLNIDQESCIKCGKCVRVCPSDIFTQERAGETIGLVRV--------ESCIVCGHCVDVC 52 Query: 114 PVDAIVEGPNFEFATET 130 P +++ EF E Sbjct: 53 PTGSVLHS---EFPPEK 66 >gi|300990137|ref|ZP_07179144.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 200-1] gi|300305772|gb|EFJ60292.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 200-1] Length = 571 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|224535656|ref|ZP_03676195.1| hypothetical protein BACCELL_00520 [Bacteroides cellulosilyticus DSM 14838] gi|224522729|gb|EEF91834.1| hypothetical protein BACCELL_00520 [Bacteroides cellulosilyticus DSM 14838] Length = 635 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 28/69 (40%), Gaps = 10/69 (14%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 AL Y E CI C LC CPA AI + + I+ KCI CG+C Sbjct: 575 KALLTYTINPELCIGCHLCFKHCPADAILGD----------VRKPHVINPDKCIKCGMCM 624 Query: 111 EACPVDAIV 119 C AI Sbjct: 625 ARCKFKAIN 633 Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 8/62 (12%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 + + + Y I+ CI C LC + CP DAI+ + R+ + Sbjct: 563 HVRDKTCRAKQCKALLTYTINPELCIGCHLCFKHCPADAIL--------GDVRKPHVINP 614 Query: 139 ER 140 ++ Sbjct: 615 DK 616 >gi|197301314|ref|ZP_03166399.1| hypothetical protein RUMLAC_00045 [Ruminococcus lactaris ATCC 29176] gi|197299632|gb|EDY34147.1| hypothetical protein RUMLAC_00045 [Ruminococcus lactaris ATCC 29176] Length = 628 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 29/69 (42%), Gaps = 10/69 (14%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 ALR++ ERC C C CP AI+ + + ID KCI CG C Sbjct: 568 ALRKFIISPERCKGCSKCARNCPVGAISG----------KIKEPFTIDTEKCIKCGACAS 617 Query: 112 ACPVDAIVE 120 AC AI Sbjct: 618 ACAFGAIHI 626 Score = 37.0 bits (84), Expect = 0.85, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 13/40 (32%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + ++ I +C C C CPV AI Sbjct: 555 HVVEKKCASHTCTALRKFIISPERCKGCSKCARNCPVGAI 594 >gi|152970518|ref|YP_001335627.1| electron transport complex protein RnfC [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150955367|gb|ABR77397.1| electron transport complex protein RnfC [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 715 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 40/112 (35%), Gaps = 13/112 (11%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEKGCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHNLADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 I F E A ++E +R R+E+ R + + R Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEE-----QRAAEAKARFEARQAR-LEREKAAR 474 >gi|116695848|ref|YP_841424.1| benzoyl-CoA dioxygenase A [Ralstonia eutropha H16] gi|113530347|emb|CAJ96694.1| Benzoyl-CoA dioxygenase A [Ralstonia eutropha H16] Length = 426 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 11/68 (16%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 ++++ E CI C CEA CP AIT +S Y +D KC C C Sbjct: 7 QVIKQHLIDPEICIRCNTCEATCPVGAITHDS-----------RNYVVDADKCNLCMACI 55 Query: 111 EACPVDAI 118 CP +I Sbjct: 56 SPCPTGSI 63 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 11/23 (47%), Positives = 12/23 (52%) Query: 98 IDMIKCIYCGLCQEACPVDAIVE 120 ID CI C C+ CPV AI Sbjct: 14 IDPEICIRCNTCEATCPVGAITH 36 >gi|94968337|ref|YP_590385.1| NADH-quinone oxidoreductase, chain G [Candidatus Koribacter versatilis Ellin345] gi|94550387|gb|ABF40311.1| NADH-quinone oxidoreductase, chain G [Candidatus Koribacter versatilis Ellin345] Length = 788 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 25/63 (39%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RCI C C +C G + + + D + C CG+C + CPV A+ Sbjct: 144 DRPRCILCYRCVRVCGEGMDVWALGVQNRGASSVIAPNEGDHLNCEECGMCIDICPVGAL 203 Query: 119 VEG 121 G Sbjct: 204 TSG 206 >gi|330817875|ref|YP_004361580.1| Iron-sulfur cluster-binding protein [Burkholderia gladioli BSR3] gi|327370268|gb|AEA61624.1| Iron-sulfur cluster-binding protein [Burkholderia gladioli BSR3] Length = 308 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 23/64 (35%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ CI C LC CP AI + + C C LC CPVD I Sbjct: 83 DEQLCIGCTLCIQACPVDAIVGAPKQ----------MHTVVAELCTGCDLCVAPCPVDCI 132 Query: 119 VEGP 122 P Sbjct: 133 AMIP 136 Score = 37.4 bits (85), Expect = 0.69, Method: Composition-based stats. Identities = 14/21 (66%), Positives = 15/21 (71%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C LC +ACPVDAI Sbjct: 82 IDEQLCIGCTLCIQACPVDAI 102 >gi|291278971|ref|YP_003495806.1| pyruvate:ferredoxin oxidoreductase [Deferribacter desulfuricans SSM1] gi|290753673|dbj|BAI80050.1| pyruvate:ferredoxin oxidoreductase [Deferribacter desulfuricans SSM1] Length = 1189 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 29/108 (26%), Gaps = 24/108 (22%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPR 85 TS + AL E CI C +C +CP A Sbjct: 675 PTGTSKYEKRNIALNVPEWDPEVCIQCGICSFVCPHATIRMKVYDPKYLENAPETFKAVD 734 Query: 86 CHDGTRRTVRYDIDM--IKCIYCGLCQEACP--------VDAIVEGPN 123 +++ I + C CG C CP AI P Sbjct: 735 AKGKEFAGMKFTIQVSVEDCTGCGACVYNCPAKSKTDPTKKAINMVPQ 782 Score = 38.5 bits (88), Expect = 0.34, Method: Composition-based stats. Identities = 12/58 (20%), Positives = 19/58 (32%), Gaps = 13/58 (22%) Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIV 157 CI CG+C CP I YD + L N + +++ + Sbjct: 695 PEVCIQCGICSFVCPHATIRMK-------------VYDPKYLENAPETFKAVDAKGKE 739 >gi|254786926|ref|YP_003074355.1| electron transport complex protein RnfC [Teredinibacter turnerae T7901] gi|237686186|gb|ACR13450.1| electron transport complex, RnfABCDGE type, C subunit [Teredinibacter turnerae T7901] Length = 747 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 2/94 (2%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C +C CPA + + + ++ CI CG C CP +I Sbjct: 370 QACIRCGMCAQACPAS-LLPQQMFWYAQSEDFDKLKEHNLFDCIECGACSYVCP-SSIPL 427 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVR 154 + + + L +KE+ + R+E+ R Sbjct: 428 VQYYRASKGEIRRLDKEKEKSDRSRLRFEARKER 461 >gi|254481239|ref|ZP_05094484.1| electron transport complex, RnfABCDGE type, B subunit subfamily [marine gamma proteobacterium HTCC2148] gi|214038402|gb|EEB79064.1| electron transport complex, RnfABCDGE type, B subunit subfamily [marine gamma proteobacterium HTCC2148] Length = 203 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 29/87 (33%), Gaps = 10/87 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E + E + E+ CI C C CP AI G + + I Sbjct: 97 EAIALDEEHGEESVTQVAYIREDECIGCTKCIQACPVDAI---------LGAAKHMHTVI 147 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFE 125 C C LC E CPVD I E Sbjct: 148 VSE-CTGCDLCVEPCPVDCIDMISEKE 173 >gi|239618433|ref|YP_002941755.1| dihydroorotate dehydrogenase family protein [Kosmotoga olearia TBF 19.5.1] gi|239507264|gb|ACR80751.1| dihydroorotate dehydrogenase family protein [Kosmotoga olearia TBF 19.5.1] Length = 361 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 12/68 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + R +C+ C +C +CP A+++E C CGLCQ Sbjct: 301 YEKRTPKIDHSKCVKCGVCVEVCPYFALSMEEQVIVD------------EEACFGCGLCQ 348 Query: 111 EACPVDAI 118 CP AI Sbjct: 349 TKCPTKAI 356 Score = 42.4 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 11/23 (47%), Positives = 14/23 (60%) Query: 98 IDMIKCIYCGLCQEACPVDAIVE 120 ID KC+ CG+C E CP A+ Sbjct: 308 IDHSKCVKCGVCVEVCPYFALSM 330 >gi|187780196|ref|ZP_02996669.1| hypothetical protein CLOSPO_03792 [Clostridium sporogenes ATCC 15579] gi|187773821|gb|EDU37623.1| hypothetical protein CLOSPO_03792 [Clostridium sporogenes ATCC 15579] Length = 1172 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 43/126 (34%), Gaps = 24/126 (19%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA---QAITIESGPRCHDGTRRTV--- 94 G+TS RG + ++CI C C ICP +A ++ + Sbjct: 668 GTTSYEKRGIAVMIPEWQ-IDKCIQCNQCSYICPHSVIRAYLLDKDEKEKAPDTFETKKA 726 Query: 95 ----------RYDIDMIKCIYCGLCQEACPVD--AIVEGP---NFEFATETRQ--ELYYD 137 R I + C CG C + CP A++ E +E + Sbjct: 727 AGKGLEDLEYRIQISSLDCTGCGNCADVCPAPGKALIMKNAEEQIEMQSENWEFGLNITT 786 Query: 138 KERLLN 143 KE L++ Sbjct: 787 KENLMD 792 >gi|188584958|ref|YP_001916503.1| protein of unknown function DUF362 [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349645|gb|ACB83915.1| protein of unknown function DUF362 [Natranaerobius thermophilus JW/NM-WN-LF] Length = 398 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 26/93 (27%), Gaps = 6/93 (6%) Query: 28 FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH 87 F+ T + + C C +C+ CP AI + Sbjct: 292 FQLPDTRFVEMVPSWLTRAVINQLR-TVPQIDSNSCAHCGICQKSCPVDAIKTQRSTNGD 350 Query: 88 DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 Y I CI C C E CP A+ Sbjct: 351 KNL-----YTITPDNCIECYCCHELCPEKAVNI 378 >gi|73749283|ref|YP_308522.1| putative reductive dehalogenase [Dehalococcoides sp. CBDB1] gi|289433245|ref|YP_003463118.1| reductive dehalogenase [Dehalococcoides sp. GT] gi|73660999|emb|CAI83606.1| putative reductive dehalogenase [Dehalococcoides sp. CBDB1] gi|288946965|gb|ADC74662.1| reductive dehalogenase [Dehalococcoides sp. GT] Length = 491 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 3/74 (4%) Query: 56 YPNGEERCIACKLCEAICPAQAITIE---SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 G + C C +C CP AI+ + + + DM C +C +CQ Sbjct: 372 DFGGRKFCETCGICADACPMGAISKDEPTWDAAKPYQYGGYLTWRTDMAVCSHCPVCQGT 431 Query: 113 CPVDAIVEGPNFEF 126 CP +A + E Sbjct: 432 CPFNAFDKSGVHEL 445 >gi|333007309|gb|EGK26791.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Shigella flexneri K-272] Length = 1159 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 32/138 (23%), Gaps = 24/138 (17%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 631 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 684 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPVDA 117 P AI + P + + C C LC E CP Sbjct: 685 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQMAPEDCTGCNLCVEVCPAKD 744 Query: 118 IVEGPNFEFATETRQELY 135 +RQE Sbjct: 745 RQNPEIKAINMMSRQEHV 762 >gi|332796725|ref|YP_004458225.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Acidianus hospitalis W1] gi|332694460|gb|AEE93927.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidianus hospitalis W1] Length = 104 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 25/84 (29%), Gaps = 2/84 (2%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 G P + CIA C CP P ++ I Sbjct: 22 VYGPVDPPKVLGIHGTIVGVDFDLCIADGSCITACPVNVFQWYDTPGHPASEKKADP--I 79 Query: 99 DMIKCIYCGLCQEACPVDAIVEGP 122 + CI+C C CPV AI P Sbjct: 80 NEQACIFCMACVNVCPVAAIDVKP 103 >gi|331015678|gb|EGH95734.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 291 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 10/74 (13%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 RGE + E CI C C CP AI + + + + + +C C Sbjct: 76 RGEAPAQVAFIREAECIGCTKCIQACPVDAILGAAK----------LMHTVIIDECTGCD 125 Query: 108 LCQEACPVDAIVEG 121 LC CPVD I Sbjct: 126 LCVAPCPVDCIEMH 139 >gi|325497960|gb|EGC95819.1| dihydropyrimidine dehydrogenase [Escherichia fergusonii ECD227] Length = 411 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + ++C+ C C C G + + +T + K Sbjct: 324 VPAEDLDRSYIVYPHINLDKCVGCGRCYISCYDG------GHQAMEWNEKTRTPHCNTEK 377 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 378 CVGCLLCGHVCPVGCIDLG 396 >gi|322832791|ref|YP_004212818.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Rahnella sp. Y9602] gi|321167992|gb|ADW73691.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Rahnella sp. Y9602] Length = 1176 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 33/144 (22%), Gaps = 32/144 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P T + + A + C C C A C Sbjct: 646 MLAGLGDAL------PVSAFPPDGTWPTGTTQWEKRNIAEEVPIWKPDLCTQCNHCVAAC 699 Query: 74 --------------PAQAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPV-- 115 A A + R +Y + C C LC E CP Sbjct: 700 PHSAIRAKVVQPEFMADAPSALQSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETRQE 133 AI E E R Sbjct: 760 RQDPSIKAINMADRIEHLEEERAN 783 >gi|317484987|ref|ZP_07943870.1| CobQ/CobB/MinD/ParA nucleotide binding domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316923725|gb|EFV44928.1| CobQ/CobB/MinD/ParA nucleotide binding domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 294 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 11/60 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C +C C A+ + Y ID ++C CG+C CP AI Sbjct: 64 DRDACRRCGICFEHCRFDAVKKDGD-----------VYGIDPLRCEGCGVCVALCPAKAI 112 >gi|300988844|ref|ZP_07178839.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 45-1] gi|300407382|gb|EFJ90920.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 45-1] Length = 570 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPADLLPQQLY-WFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|300907218|ref|ZP_07124880.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 84-1] gi|300401022|gb|EFJ84560.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 84-1] Length = 573 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|298380776|ref|ZP_06990375.1| electron transport complex protein RnfC [Escherichia coli FVEC1302] gi|298278218|gb|EFI19732.1| electron transport complex protein RnfC [Escherichia coli FVEC1302] Length = 588 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|256018178|ref|ZP_05432043.1| electron transport complex protein RnfC [Shigella sp. D9] gi|332279226|ref|ZP_08391639.1| electron transport complex protein rnfC [Shigella sp. D9] gi|332101578|gb|EGJ04924.1| electron transport complex protein rnfC [Shigella sp. D9] Length = 565 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|253682712|ref|ZP_04863509.1| ferredoxin [Clostridium botulinum D str. 1873] gi|253562424|gb|EES91876.1| ferredoxin [Clostridium botulinum D str. 1873] Length = 288 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 5/78 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEAC 113 +++C+AC C + CP I + + R +I CI CGLC +AC Sbjct: 167 NKDKCVACGACVSTCPKGVIDLVPQKQLVFVSCNSHDRGLDVKNICSTGCIGCGLCAKAC 226 Query: 114 PVDAIVEGPNFEFATETR 131 P +AI N ++ Sbjct: 227 PKEAITMENNLPVIDYSK 244 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 11/67 (16%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L CI C LC CP +AIT+E+ ID KC+ CGLC Sbjct: 206 LDVKNICSTGCIGCGLCAKACPKEAITMENNLPV-----------IDYSKCVNCGLCAMK 254 Query: 113 CPVDAIV 119 CP AI Sbjct: 255 CPTKAIQ 261 >gi|254488903|ref|ZP_05102108.1| iron-sulfur cluster-binding protein [Roseobacter sp. GAI101] gi|214045772|gb|EEB86410.1| iron-sulfur cluster-binding protein [Roseobacter sp. GAI101] Length = 650 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 9/82 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C C ++CP+ A+ + C+ CGLC CP AI Sbjct: 498 DTDACTLCLSCVSLCPSGALGDNPD---------LPQLRFQEDACLQCGLCANICPEQAI 548 Query: 119 VEGPNFEFATETRQELYYDKER 140 P ++ +E Sbjct: 549 TLKPQMNLTDAAFTQVVLHEEE 570 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 11/53 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C +CP AIT ID + C CG C CP AI Sbjct: 279 CSNCLDLCPTGAITSAGE-----------HVAIDPLICAGCGSCSAVCPSGAI 320 >gi|170754983|ref|YP_001781396.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum B1 str. Okra] gi|169120195|gb|ACA44031.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum B1 str. Okra] Length = 631 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 10/63 (15%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 + ++CI C C CP I + ++ I+ KCI CG C ACPV Sbjct: 576 HYEITDKCIGCTKCARGCPVSCIIG----------KVKEKHFINQEKCIKCGNCYSACPV 625 Query: 116 DAI 118 AI Sbjct: 626 GAI 628 Score = 37.8 bits (86), Expect = 0.58, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 17/39 (43%) Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + RC GT + + + KCI C C CPV I Sbjct: 560 HVNEKRCPSGTCKNLLHYEITDKCIGCTKCARGCPVSCI 598 >gi|28871290|ref|NP_793909.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213970874|ref|ZP_03398997.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv. tomato T1] gi|301383775|ref|ZP_07232193.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv. tomato Max13] gi|302059917|ref|ZP_07251458.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv. tomato K40] gi|302130516|ref|ZP_07256506.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28854540|gb|AAO57604.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv. tomato str. DC3000] gi|213924397|gb|EEB57969.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv. tomato T1] Length = 291 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 10/74 (13%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 RGE + E CI C C CP AI + + + + + +C C Sbjct: 76 RGEAPAQVAFIREAECIGCTKCIQACPVDAILGAAK----------LMHTVIIDECTGCD 125 Query: 108 LCQEACPVDAIVEG 121 LC CPVD I Sbjct: 126 LCVAPCPVDCIEMH 139 >gi|83950408|ref|ZP_00959141.1| iron-sulfur cluster-binding protein [Roseovarius nubinhibens ISM] gi|83838307|gb|EAP77603.1| iron-sulfur cluster-binding protein [Roseovarius nubinhibens ISM] Length = 672 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 30/99 (30%), Gaps = 13/99 (13%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 L + C C C ++CP+ A+ + Sbjct: 508 PLPEGAPYGAVLV----DTDACTLCLSCVSLCPSGALGDNPD---------LPQLRFQED 554 Query: 102 KCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140 C+ CGLC CP DAI P + + ++E Sbjct: 555 ACLQCGLCANICPEDAITYEPRLDLTDAALSQTVLNEEE 593 Score = 42.0 bits (97), Expect = 0.030, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 21/55 (38%), Gaps = 11/55 (20%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C +CP AIT + ID + C CG C ACP AI Sbjct: 300 TGCTRCLDLCPTGAITPDGD-----------HVTIDPMVCAGCGACSAACPSGAI 343 >gi|125975026|ref|YP_001038936.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium thermocellum ATCC 27405] gi|256005088|ref|ZP_05430058.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium thermocellum DSM 2360] gi|281418557|ref|ZP_06249576.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium thermocellum JW20] gi|125715251|gb|ABN53743.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium thermocellum ATCC 27405] gi|255990939|gb|EEU01051.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium thermocellum DSM 2360] gi|281407641|gb|EFB37900.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium thermocellum JW20] gi|316939187|gb|ADU73221.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium thermocellum DSM 1313] Length = 290 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 9/70 (12%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G +++CI C LC+A+CPA+ I ++ + + CIYCG Sbjct: 152 GVKGGMMPSWVKDKCIYCGLCQAVCPAKVIEVKKQEKELTFNEK---------DCIYCGK 202 Query: 109 CQEACPVDAI 118 C + CP A Sbjct: 203 CVKVCPTSAW 212 Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 21/64 (32%), Gaps = 3/64 (4%) Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 C + E G KCIYCGLCQ CP I + T + Sbjct: 139 CRNNCLKAEENDLGVKGGMMPSWVK---DKCIYCGLCQAVCPAKVIEVKKQEKELTFNEK 195 Query: 133 ELYY 136 + Y Sbjct: 196 DCIY 199 >gi|328947025|ref|YP_004364362.1| Ferredoxin hydrogenase [Treponema succinifaciens DSM 2489] gi|328447349|gb|AEB13065.1| Ferredoxin hydrogenase [Treponema succinifaciens DSM 2489] Length = 492 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 27/72 (37%), Gaps = 6/72 (8%) Query: 54 RRYPNGEERCIACKLCEAICPAQ------AITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 RR E+ CI C C CP E+ P ID KCI+CG Sbjct: 139 RRATIDEKLCINCGKCMENCPYHSIIKIPVPCEEACPVGAISKDEKGHEKIDYHKCIFCG 198 Query: 108 LCQEACPVDAIV 119 C CP A++ Sbjct: 199 NCMRECPFGAMM 210 Score = 40.5 bits (93), Expect = 0.079, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 4/79 (5%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKC 103 R + +E C C + + P + R+ + D ID C Sbjct: 89 REKPTWPMLTVLDEACNGCVKAHYMVTNACQGCYARPCMVNCPRKAITVDRRATIDEKLC 148 Query: 104 IYCGLCQEACPVDAIVEGP 122 I CG C E CP +I++ P Sbjct: 149 INCGKCMENCPYHSIIKIP 167 >gi|315291967|gb|EFU51319.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 153-1] Length = 569 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|288957563|ref|YP_003447904.1| 4Fe-4S ferredoxin, iron-sulfur binding [Azospirillum sp. B510] gi|288909871|dbj|BAI71360.1| 4Fe-4S ferredoxin, iron-sulfur binding [Azospirillum sp. B510] Length = 688 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 26/120 (21%), Positives = 34/120 (28%), Gaps = 16/120 (13%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80 L LR+ K P E + P E C C C CP A+ Sbjct: 491 MLALRHLHK---VAPAPVEVLALPPGAPFGRV----AVDVEGCTLCLACVGACPTGALLD 543 Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140 + C+ CGLC+ CP I P +F R +E Sbjct: 544 NADK---------PMLSFAQDACVQCGLCRTTCPEKVISLVPEIDFRDRARGASVIKEEE 594 Score = 40.9 bits (94), Expect = 0.062, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 17/54 (31%), Gaps = 11/54 (20%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 C C +CP A+T ID C CG C CP A Sbjct: 289 TGCTRCLDVCPTGAVTPNGD-----------HVAIDPHVCAGCGSCAAVCPTGA 331 >gi|268323353|emb|CBH36941.1| conserved hypothetical protein containing 4Fe-4S binding domain, NADH-quinone oxidoreductase chain F related [uncultured archaeon] Length = 658 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 10/62 (16%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L + ++C AC+LC CP AI + + V + ID CI CG+C + Sbjct: 559 LISFYIDPDKCTACRLCMKNCPEGAIEGD----------KRVIHVIDQTLCIKCGICYDV 608 Query: 113 CP 114 CP Sbjct: 609 CP 610 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 17/40 (42%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 I G + + + ID KC C LC + CP AI Sbjct: 545 HIRDGRCPALVCKNLISFYIDPDKCTACRLCMKNCPEGAI 584 >gi|260892798|ref|YP_003238895.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ammonifex degensii KC4] gi|260864939|gb|ACX52045.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ammonifex degensii KC4] Length = 657 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 35/114 (30%), Gaps = 14/114 (12%) Query: 24 LRYFFKA----KTTINYPFEKGSTSPRFRGE---HALRRYPNGEERCIACKLCEAICPAQ 76 L+ F+ YP F G +R +E+C C CE +CP + Sbjct: 200 LKKLFQKVAGHPRIRLYPATTLEEVEGFVGNWEVKIKQRPSLVDEKCDRCGRCEEVCPVE 259 Query: 77 AITIE-------SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 RY ID+ C CG C +ACP I Sbjct: 260 VPDPFNYGLSSRKAIYFPYRDAFPSRYAIDLDHCTRCGECVKACPRGLIKLDRE 313 Score = 38.9 bits (89), Expect = 0.25, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 13/73 (17%) Query: 48 RGEHALRRYPNGEER--CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 RG+ L + C C +C C A+ ++ G +++ C Sbjct: 573 RGQVELEPFVAEVYPERCNGCGICVEECSYGALKLKDGKV-----------EVNEAVCQG 621 Query: 106 CGLCQEACPVDAI 118 CG C CP A+ Sbjct: 622 CGACAAMCPQRAL 634 >gi|227355595|ref|ZP_03839990.1| electron transport complex protein [Proteus mirabilis ATCC 29906] gi|227164391|gb|EEI49280.1| electron transport complex protein [Proteus mirabilis ATCC 29906] Length = 673 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 1/58 (1%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 N EE CI C C CP+ + + G ++ CI CG C CP Sbjct: 374 DNVEEACIRCGQCVDACPSGLLPQQLY-WFSKGKEHEKAQQHNLFDCIECGACAFVCP 430 >gi|218549560|ref|YP_002383351.1| dihydropyrimidine dehydrogenase [Escherichia fergusonii ATCC 35469] gi|218357101|emb|CAQ89734.1| putative oxidoreductase subunit [Escherichia fergusonii ATCC 35469] Length = 411 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + ++C+ C C C G + + +T + K Sbjct: 324 VPAEDLDRSYIVYPHINLDKCVGCGRCYISCYDG------GHQAMEWNEKTRTPHCNTEK 377 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 378 CVGCLLCGHVCPVGCIDLG 396 >gi|158321273|ref|YP_001513780.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs] gi|158141472|gb|ABW19784.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs] Length = 631 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 10/58 (17%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+CI C C CP I+ + R+ ID CI CG C CPV A+ Sbjct: 581 EKCIGCTKCARNCPVSCISG----------KVKERHVIDTEACIKCGNCMAVCPVGAV 628 >gi|159905432|ref|YP_001549094.1| ferredoxin [Methanococcus maripaludis C6] gi|159886925|gb|ABX01862.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus maripaludis C6] Length = 170 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 2/59 (3%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTV--RYDIDMIKCIYCGLCQEACPVDAIV 119 CI C C+ CP AI + + ID KC+YC C + CPV A+ Sbjct: 52 CIGCGGCKNACPTNAIEMIPVEPVKITETYSKEAIPKIDYDKCVYCLYCHDFCPVFALF 110 Score = 38.2 bits (87), Expect = 0.39, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 14/25 (56%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 + CI CG C+ ACP +AI P Sbjct: 47 VFSELCIGCGGCKNACPTNAIEMIP 71 >gi|156935094|ref|YP_001439010.1| hypothetical protein ESA_02945 [Cronobacter sakazakii ATCC BAA-894] gi|156533348|gb|ABU78174.1| hypothetical protein ESA_02945 [Cronobacter sakazakii ATCC BAA-894] Length = 990 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 29/89 (32%), Gaps = 4/89 (4%) Query: 34 INYPFEKGST-SPRFRGEHALRRYPNGEERCIACKLCEAICP---AQAITIESGPRCHDG 89 ++ P ++ + +H+ Y ++CI C C C H Sbjct: 119 MHIPIQRYEYQRKPYVKDHSNPFYTYDPDQCILCGRCVEACQNVEVNETLSIDYTMAHPR 178 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 I C+ CG C CP +A+ Sbjct: 179 VLWDGGETIAGSSCVSCGHCVTVCPCNAL 207 >gi|152991345|ref|YP_001357067.1| pyruvate flavodoxin oxidoreductase subunit delta [Nitratiruptor sp. SB155-2] gi|151423206|dbj|BAF70710.1| pyruvate:ferredoxin oxidoreductase, delta subunit [Nitratiruptor sp. SB155-2] Length = 143 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 10/80 (12%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P+ ++ G+ + + + CI C+ C C P +R Sbjct: 47 PYAPTNSHEWQVGDWRVEKPVYNRDLCIDCQFCWVFC----------PDISILSRDKKMI 96 Query: 97 DIDMIKCIYCGLCQEACPVD 116 I C CG+C E CP + Sbjct: 97 GIIYEHCKGCGICVEVCPTN 116 >gi|26247685|ref|NP_753725.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli CFT073] gi|227886213|ref|ZP_04004018.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli 83972] gi|300971597|ref|ZP_07171508.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli MS 45-1] gi|301046199|ref|ZP_07193372.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli MS 185-1] gi|306813626|ref|ZP_07447807.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli NC101] gi|26108087|gb|AAN80287.1|AE016760_146 Probable pyruvate-flavodoxin oxidoreductase [Escherichia coli CFT073] gi|227836417|gb|EEJ46883.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli 83972] gi|300301808|gb|EFJ58193.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli MS 185-1] gi|300411211|gb|EFJ94749.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli MS 45-1] gi|305852900|gb|EFM53345.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli NC101] gi|307553411|gb|ADN46186.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli ABU 83972] gi|315295387|gb|EFU54717.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli MS 153-1] Length = 1174 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 ILAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|85059431|ref|YP_455133.1| putative iron-sulfur binding NADH dehydrogenase [Sodalis glossinidius str. 'morsitans'] gi|84779951|dbj|BAE74728.1| putative iron-sulfur binding NADH dehydrogenase [Sodalis glossinidius str. 'morsitans'] Length = 663 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 34/103 (33%), Gaps = 3/103 (2%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C CPA + + G + CI CG C CP I Sbjct: 375 QSCIRCSRCADACPAS-LLPQQLYWFSRGQEHDKARQHHLFDCIECGACAYVCP-SNIPL 432 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + + L D R R+E+++ R + R Sbjct: 433 VHYYRQQKAEIRALDDDARRAAMAKARYEAKLAR-REREKQQR 474 >gi|313672549|ref|YP_004050660.1| electron transport complex, rnfabcdge type, b subunit [Calditerrivibrio nitroreducens DSM 19672] gi|312939305|gb|ADR18497.1| electron transport complex, RnfABCDGE type, B subunit [Calditerrivibrio nitroreducens DSM 19672] Length = 260 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 27/62 (43%), Positives = 32/62 (51%), Gaps = 11/62 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CIACKLC+ CP AIT+E+ ID KCI CG C+E CP AI Sbjct: 209 CKVACIACKLCQKNCPVDAITVENNLAY-----------IDPNKCINCGKCKEVCPTKAI 257 Query: 119 VE 120 E Sbjct: 258 NE 259 Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 5/78 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV-----RYDIDMIKCIYCGLCQEAC 113 E+C AC C CP + I I + T R++ + + CI C LCQ+ C Sbjct: 164 DAEKCTACGACVKACPRKLIEIVPVDKRFTVTCRSIDKGVDAKNFCKVACIACKLCQKNC 223 Query: 114 PVDAIVEGPNFEFATETR 131 PVDAI N + + Sbjct: 224 PVDAITVENNLAYIDPNK 241 Score = 34.3 bits (77), Expect = 5.3, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 21/64 (32%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C C AI I + +D KC CG C +ACP I Sbjct: 134 CIYGCVGGGSCVTACKFDAIYIGNEGIP----------IVDAEKCTACGACVKACPRKLI 183 Query: 119 VEGP 122 P Sbjct: 184 EIVP 187 >gi|302392632|ref|YP_003828452.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Acetohalobium arabaticum DSM 5501] gi|302204709|gb|ADL13387.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Acetohalobium arabaticum DSM 5501] Length = 600 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 31/69 (44%), Gaps = 10/69 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L Y EE C AC +C+ CP AIT Y+ID C CG+C+E Sbjct: 542 LASYKIDEEACEACGVCKEECPVSAITGSKEEG----------YEIDPEICESCGICEEE 591 Query: 113 CPVDAIVEG 121 CP + I G Sbjct: 592 CPFEVITRG 600 Score = 38.9 bits (89), Expect = 0.23, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 18/54 (33%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 E + + Y ID C CG+C+E CPV AI Sbjct: 519 EYFRDEYEAHVFDKYCPAGVCKDLASYKIDEEACEACGVCKEECPVSAITGSKE 572 >gi|326791118|ref|YP_004308939.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Clostridium lentocellum DSM 5427] gi|326541882|gb|ADZ83741.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Clostridium lentocellum DSM 5427] Length = 1179 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 32/112 (28%), Gaps = 29/112 (25%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRRTV-------- 94 RG N + CI C C +CP I + +G Sbjct: 675 RGVGIDVPEWN-IDTCIQCNQCSFVCPHACIRPVLVSEDEMKDAPEGFEAKKAVGKGLEG 733 Query: 95 ---RYDIDMIKCIYCGLCQEACPVDAIVEG------------PNFEFATETR 131 R + + C CG C + CP PN+EFA + Sbjct: 734 LVFRMQVSTMDCTGCGNCVDICPTKVKSLVMKPLATQVEKEIPNWEFAVSDK 785 >gi|261258339|ref|ZP_05950872.1| inner membrane iron-sulfur protein in SoxR-reducing complex [Escherichia coli O157:H7 str. FRIK966] Length = 589 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPADLLPQQLY-WFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|261253563|ref|ZP_05946136.1| electron transport complex protein RnfC [Vibrio orientalis CIP 102891] gi|260936954|gb|EEX92943.1| electron transport complex protein RnfC [Vibrio orientalis CIP 102891] Length = 881 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 37/104 (35%), Gaps = 9/104 (8%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C C CPA + + ++++ CI CG C CP I Sbjct: 378 CIRCGQCAEACPAS-LLPQQLLWHSKAEELDKCEELNIKDCIECGACAFVCP-SEIPLVQ 435 Query: 123 NFEFAT---ETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + A TR+E + E R+E + R + D R Sbjct: 436 YYRQAKAEIRTRKE---ESEAAERAKVRFEEKKAR-LERDKAAR 475 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 10/24 (41%), Positives = 14/24 (58%) Query: 91 RRTVRYDIDMIKCIYCGLCQEACP 114 R+ + + + CI CG C EACP Sbjct: 366 RKEISPNQYEMACIRCGQCAEACP 389 >gi|260893623|ref|YP_003239720.1| hydrogenase, Fe-only [Ammonifex degensii KC4] gi|260865764|gb|ACX52870.1| hydrogenase, Fe-only [Ammonifex degensii KC4] Length = 578 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 30/93 (32%), Gaps = 7/93 (7%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93 + +P + +R +CI C+ C +C + DG Sbjct: 122 VRFPRVRREFPVDDSSAAIIR----DPNKCIVCRRCVTVCENIQTVGVLELQKVDGQAIV 177 Query: 94 VR---YDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + C+ CG C CPV AI E + Sbjct: 178 GVKGGVPLAETNCVQCGQCALVCPVGAIYERDD 210 >gi|291614940|ref|YP_003525097.1| electron transport complex, RnfABCDGE type, C subunit [Sideroxydans lithotrophicus ES-1] gi|291585052|gb|ADE12710.1| electron transport complex, RnfABCDGE type, C subunit [Sideroxydans lithotrophicus ES-1] Length = 447 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 41/129 (31%), Gaps = 11/129 (8%) Query: 5 RCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64 + N S + L + + +++ P KG++ G L CI Sbjct: 324 KSNASEIILGGPMMGMTIS---------SLDVPVTKGTSGVLAFGRAQLPEEAPKVYSCI 374 Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 C C +CP + G + ++ +C CG C CP I F Sbjct: 375 KCGECLKVCPKFLNPSQLGLLAAKREYEEMAERYNLDRCFECGCCSYVCPSH-IPLVQQF 433 Query: 125 EFATE-TRQ 132 A R+ Sbjct: 434 RIAKAVNRE 442 >gi|251790931|ref|YP_003005652.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Dickeya zeae Ech1591] gi|247539552|gb|ACT08173.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Dickeya zeae Ech1591] Length = 1177 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 30/127 (23%), Gaps = 26/127 (20%) Query: 31 KTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88 + P + + A + C C C A CP AI + P Sbjct: 655 PVSALPPDGTWPVGTTQWEKRNIAEQIPLWKPALCTQCNHCVAACPHSAIRAKVVPAEAM 714 Query: 89 ----------------GTRRTVRYDIDMIKCIYCGLCQEACPV--------DAIVEGPNF 124 + + C C LC E CP AI P Sbjct: 715 ADAPASLQSLDVKARDMRGQKYVLQVAPEDCTGCNLCVEVCPAKDRQNPDIKAINMEPRL 774 Query: 125 EFATETR 131 E + Sbjct: 775 EHVATEK 781 >gi|239831126|ref|ZP_04679455.1| dihydroorotate dehydrogenase family protein [Ochrobactrum intermedium LMG 3301] gi|239823393|gb|EEQ94961.1| dihydroorotate dehydrogenase family protein [Ochrobactrum intermedium LMG 3301] Length = 436 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 32/79 (40%), Gaps = 6/79 (7%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI C C C + ++ +G R +++ +C+ Sbjct: 330 QYLNLNYVTKARINQDLCIKCGRCHIACED--TSHQAITNLVNGAR---HFEVIDEECVG 384 Query: 106 CGLCQEACPV-DAIVEGPN 123 C LC CPV D I Sbjct: 385 CNLCVNVCPVEDCITMEQI 403 >gi|147678456|ref|YP_001212671.1| hypothetical protein PTH_2121 [Pelotomaculum thermopropionicum SI] gi|146274553|dbj|BAF60302.1| Uncharacterized Fe-S center protein [Pelotomaculum thermopropionicum SI] Length = 367 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 26/60 (43%), Gaps = 11/60 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+C C+ C CPAQAI R +D KCI CG C CPV AI Sbjct: 191 NPEKCTGCERCSQWCPAQAI-----------GVRGRVSVVDENKCIGCGECTVTCPVHAI 239 >gi|197117837|ref|YP_002138264.1| benzoyl-CoA reductase electron transfer protein [Geobacter bemidjiensis Bem] gi|197087197|gb|ACH38468.1| benzoyl-CoA reductase electron transfer protein, putative [Geobacter bemidjiensis Bem] Length = 636 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 35/98 (35%), Gaps = 17/98 (17%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 L+Y F+ + + ++ L + +C C C CPA AI Sbjct: 534 TLKY-FRHEYEAHIKEKRCPALSC----KELIAFHIDPAKCKGCGSCLRKCPATAIEG-- 586 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP--VDAI 118 + + ID KC CG C EACP AI Sbjct: 587 --------GKKTIHVIDQEKCTKCGTCIEACPAAFHAI 616 Score = 38.5 bits (88), Expect = 0.31, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 18/53 (33%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + I+ + + + ID KC CG C CP AI G Sbjct: 536 KYFRHEYEAHIKEKRCPALSCKELIAFHIDPAKCKGCGSCLRKCPATAIEGGK 588 >gi|94266270|ref|ZP_01289976.1| Pyruvate:ferredoxin (flavodoxin) oxidoreductase [delta proteobacterium MLMS-1] gi|93453152|gb|EAT03620.1| Pyruvate:ferredoxin (flavodoxin) oxidoreductase [delta proteobacterium MLMS-1] Length = 1181 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 29/109 (26%), Gaps = 26/109 (23%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR- 91 T +EK + + CI C C CP AI ++ + Sbjct: 672 TGTTQYEKRNIAVHVPEWL--------PTNCIQCGRCSLACPHAAIRMKMVKSADLKGKS 723 Query: 92 ---------------RTVRYDIDMIKCIYCGLCQEACP--VDAIVEGPN 123 R + C C LC E CP A+ N Sbjct: 724 KSFKSVKGVGKQFSGREACLQVFTEDCCGCTLCVEVCPAKTKALKMIDN 772 >gi|86140148|ref|ZP_01058710.1| formate dehydrogenase, alpha subunit [Roseobacter sp. MED193] gi|85823085|gb|EAQ43298.1| formate dehydrogenase, alpha subunit [Roseobacter sp. MED193] Length = 924 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 5/65 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK----CIYCGLCQEACP 114 + CI+C LC C + + G +DI C+ CG C +ACP Sbjct: 147 NLDACISCGLCVRACR-EVQVNDVIGMAGRGHDAYPVFDIADDMGASSCVACGECVQACP 205 Query: 115 VDAIV 119 A++ Sbjct: 206 TGALM 210 >gi|303245643|ref|ZP_07331926.1| hydrogenase, Fe-only [Desulfovibrio fructosovorans JJ] gi|302492906|gb|EFL52771.1| hydrogenase, Fe-only [Desulfovibrio fructosovorans JJ] Length = 585 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 6/79 (7%) Query: 59 GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115 ++CI C+ CE +C Q + SG +++++ C CG C CP Sbjct: 149 DMDKCIMCRRCETMCNTVQTCGVLSGVNRGFTAVVAPAFEMNLADTVCTNCGQCVAVCPT 208 Query: 116 DAIVEGPNFEFATETRQEL 134 A+V E+ E + L Sbjct: 209 GALV---EHEYIWEVVEAL 224 >gi|302393026|ref|YP_003828846.1| NAD-dependent formate dehydrogenase catalytic subunit [Acetohalobium arabaticum DSM 5501] gi|302205103|gb|ADL13781.1| NAD-dependent formate dehydrogenase catalytic subunit [Acetohalobium arabaticum DSM 5501] Length = 901 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 26/71 (36%), Gaps = 5/71 (7%) Query: 57 PNGEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDIDMI----KCIYCGLCQE 111 +CI C C + Q + + + Y+ D+ C++CG C E Sbjct: 141 EYDPNKCILCGRCVKVDQEIQCSDALEFSQRGHEAQVSTAYEQDLSGEDSDCVFCGQCVE 200 Query: 112 ACPVDAIVEGP 122 CP A+ P Sbjct: 201 VCPTGALTYKP 211 Score = 34.3 bits (77), Expect = 5.6, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 22/79 (27%), Gaps = 2/79 (2%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 C C ++ I + + + + D KCI CG C + Sbjct: 101 CEKSGNCKLQDYCYEYNVSEPIFGTNEKEGLEIKDKNPFIEYDPNKCILCGRCVKV--DQ 158 Query: 117 AIVEGPNFEFATETRQELY 135 I EF+ + Sbjct: 159 EIQCSDALEFSQRGHEAQV 177 >gi|255527959|ref|ZP_05394800.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium carboxidivorans P7] gi|296188409|ref|ZP_06856800.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7] gi|255508353|gb|EET84752.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium carboxidivorans P7] gi|296047030|gb|EFG86473.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7] Length = 368 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 12/79 (15%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 + +HAL+ ++C+ C C +CP QAITIE+ + KCI CG Sbjct: 181 KEQHALKMDVQN-DKCVGCGQCAKVCPEQAITIENRKAS-----------VSHDKCIGCG 228 Query: 108 LCQEACPVDAIVEGPNFEF 126 C C AI + E Sbjct: 229 ECMTVCKPKAIGMDWSSEM 247 Score = 40.5 bits (93), Expect = 0.075, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 3/61 (4%) Query: 65 ACKLCEAICPAQAIT---IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 K E AI + P + ++ D+ KC+ CG C + CP AI Sbjct: 154 HFKGHEMAGFGGAIKNLGMGGAPAIGKKEQHALKMDVQNDKCVGCGQCAKVCPEQAITIE 213 Query: 122 P 122 Sbjct: 214 N 214 >gi|253747322|gb|EET02101.1| Hypothetical protein GL50581_641 [Giardia intestinalis ATCC 50581] Length = 462 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 24/72 (33%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 +RCI C C +C +Q I + + C+ CG C C Sbjct: 5 HMITFDSDRCIGCSKCVQVCDSQGIRVFKNGIGPRSKPVVKLGSLANSDCVGCGQCIHEC 64 Query: 114 PVDAIVEGPNFE 125 P AI + E Sbjct: 65 PAGAIYPYIDIE 76 >gi|225871979|ref|YP_002753433.1| NADH dehydrogenase I, G subunit [Acidobacterium capsulatum ATCC 51196] gi|225793126|gb|ACO33216.1| NADH dehydrogenase I, G subunit [Acidobacterium capsulatum ATCC 51196] Length = 781 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 24/63 (38%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RCI C C +C G + D ++C CG+C + CPV A+ Sbjct: 144 DRPRCILCYRCVRVCGEGMDVWALGIQNRGAGAVIAPNKQDHLECEECGMCIDICPVGAL 203 Query: 119 VEG 121 G Sbjct: 204 TSG 206 >gi|225389409|ref|ZP_03759133.1| hypothetical protein CLOSTASPAR_03156 [Clostridium asparagiforme DSM 15981] gi|225044530|gb|EEG54776.1| hypothetical protein CLOSTASPAR_03156 [Clostridium asparagiforme DSM 15981] Length = 320 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 26/87 (29%), Gaps = 8/87 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + G + ERC++C CE C + R Sbjct: 145 CPNDCAKVRMHDFGIMGMTEPQYRAERCVSCGACEKAC--------KRKSVGALSMVNYR 196 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGP 122 + KCI CG C CP A V Sbjct: 197 IQRNHEKCIGCGECVIQCPTRAWVRSD 223 >gi|171060331|ref|YP_001792680.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Leptothrix cholodnii SP-6] gi|170777776|gb|ACB35915.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Leptothrix cholodnii SP-6] Length = 431 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 11/67 (16%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 ++++ E CI C CEAICP QAIT +S Y +D +KC C C Sbjct: 9 VIKQHLIDPEICIRCNTCEAICPVQAITHDS-----------RNYVVDAVKCNLCMACIS 57 Query: 112 ACPVDAI 118 CP +I Sbjct: 58 PCPTGSI 64 Score = 37.4 bits (85), Expect = 0.64, Method: Composition-based stats. Identities = 11/37 (29%), Positives = 14/37 (37%) Query: 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++ ID CI C C+ CPV AI Sbjct: 1 MNAPTDAAVIKQHLIDPEICIRCNTCEAICPVQAITH 37 >gi|168186747|ref|ZP_02621382.1| polyferredoxin [Clostridium botulinum C str. Eklund] gi|169295268|gb|EDS77401.1| polyferredoxin [Clostridium botulinum C str. Eklund] Length = 294 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 5/78 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQEAC 113 ++ C+AC C + CP I + + + R +I CI CGLC +AC Sbjct: 167 NKDNCVACGACVSTCPKNIIELVPKKQLVIVSCNSHDRGLDVKNICSTGCIGCGLCAKAC 226 Query: 114 PVDAIVEGPNFEFATETR 131 P DAI N ++ Sbjct: 227 PKDAITMENNLPVIDYSK 244 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 31/90 (34%), Gaps = 11/90 (12%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 P ++ + L CI C LC CP AIT+E+ Sbjct: 183 KNIIELVPKKQLVIVSCNSHDRGLDVKNICSTGCIGCGLCAKACPKDAITMENNLPV--- 239 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 ID KC+ CGLC CP AI Sbjct: 240 --------IDYSKCVNCGLCAMKCPTKAIQ 261 >gi|167765080|ref|ZP_02437193.1| hypothetical protein BACSTE_03466 [Bacteroides stercoris ATCC 43183] gi|167696708|gb|EDS13287.1| hypothetical protein BACSTE_03466 [Bacteroides stercoris ATCC 43183] Length = 1185 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 32/90 (35%), Gaps = 15/90 (16%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGP 84 E+G+ RG A N E CI C C +CP A + Sbjct: 667 EQGTAKYEKRGVAAFVPEWN-PENCIQCNKCAYVCPHASIRPFVLDAEEQKGAEFSQLKA 725 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 T R +D++ C+ CG C + CP Sbjct: 726 VGKAFEGMTFRMQVDVLDCLGCGNCADICP 755 >gi|167590078|ref|ZP_02382466.1| dihydroorotate dehydrogenase family protein [Burkholderia ubonensis Bu] Length = 435 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 6/76 (7%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + ++RCI C LC C + ++ R DG R +++ +C+ Sbjct: 328 QYLNLNYDIKARIDQDRCIQCGLCHIACED--TSHQAITREKDGVR---HFEVIDAECVG 382 Query: 106 CGLCQEACPV-DAIVE 120 C LC CPV I Sbjct: 383 CNLCMHVCPVEQCITM 398 >gi|148379808|ref|YP_001254349.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum A str. ATCC 3502] gi|153931627|ref|YP_001384106.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum A str. ATCC 19397] gi|153936195|ref|YP_001387646.1| putative [Fe] hydrogenase, electron-transfer subunit [Clostridium botulinum A str. Hall] gi|148289292|emb|CAL83388.1| putative electron-transferring subunit of iron-only hydrogenase [Clostridium botulinum A str. ATCC 3502] gi|152927671|gb|ABS33171.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum A str. ATCC 19397] gi|152932109|gb|ABS37608.1| putative iron hydrogenase, electron-transfer subunit [Clostridium botulinum A str. Hall] Length = 631 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 10/63 (15%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 + ++CI C C CP I + ++ I+ KCI CG C ACPV Sbjct: 576 HYEITDKCIGCTKCARGCPVSCIIG----------KVKEKHFINQEKCIKCGNCYSACPV 625 Query: 116 DAI 118 AI Sbjct: 626 GAI 628 >gi|75410723|sp|Q9AIX6|BOXA_AZOEV RecName: Full=Benzoyl-CoA oxygenase component A; AltName: Full=Benzoyl-CoA 2,3-dioxygenase subunit A; AltName: Full=Benzoyl-CoA dioxygenase reductase component gi|12655805|gb|AAK00600.1|AF220510_2 BoxA [Azoarcus evansii] gi|23664440|gb|AAN39377.1| benzoyl-CoA oxygenase component A [Azoarcus evansii] Length = 414 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 11/65 (16%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 R++ E CI C CE ICP AIT +S Y + C C C C Sbjct: 12 RQHLIDPEICIRCNTCEEICPVDAITHDS-----------RNYVVKFETCNGCLACISPC 60 Query: 114 PVDAI 118 P AI Sbjct: 61 PTGAI 65 Score = 38.2 bits (87), Expect = 0.45, Method: Composition-based stats. Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%) Query: 98 IDMIKCIYCGLCQEACPVDAI-VEGPNFEFATET 130 ID CI C C+E CPVDAI + N+ ET Sbjct: 16 IDPEICIRCNTCEEICPVDAITHDSRNYVVKFET 49 >gi|329896722|ref|ZP_08271702.1| Glutamate synthase [NADPH] small chain [gamma proteobacterium IMCC3088] gi|328921593|gb|EGG28970.1| Glutamate synthase [NADPH] small chain [gamma proteobacterium IMCC3088] Length = 566 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 29/98 (29%), Gaps = 21/98 (21%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT-------------- 93 R + + E RCI C C ICP IT + R Sbjct: 459 RCLNCDVQTVFDETRCIECDACVDICPTDCITFTANEDDESVLRSKLTGPSHNLATDLYV 518 Query: 94 -------VRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 D C++CGLC E CP A F Sbjct: 519 SAELPTARVMVKDENICLHCGLCAERCPTTAWDMQKYF 556 Score = 38.2 bits (87), Expect = 0.42, Method: Composition-based stats. Identities = 10/38 (26%), Positives = 13/38 (34%) Query: 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 V+ D +CI C C + CP D I Sbjct: 455 KEAERCLNCDVQTVFDETRCIECDACVDICPTDCITFT 492 >gi|324019506|gb|EGB88725.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 117-3] Length = 543 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 338 PQEEQSCIRCSACADACPADLLPQQLY-WFSKGQQHDKATTHNIADCIECGACAWVCP-S 395 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 396 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 444 >gi|159905364|ref|YP_001549026.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanococcus maripaludis C6] gi|159886857|gb|ABX01794.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus maripaludis C6] Length = 395 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 1/75 (1%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E+C C C CP AI + + +++ + CI CG C CP A+ Sbjct: 266 EKCAYCGPCALKCPTGAIKVVNPKGLELPSKKKTEKANEFAMCIRCGACAMKCPTGALKM 325 Query: 121 GP-NFEFATETRQEL 134 G E TR E Sbjct: 326 GKVVHEGKEYTRVEF 340 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++CI C +C CP AI +G + + ++ +CI C C EACP I Sbjct: 156 DTDKCIYCTVCSQTCPWNAIF-VAGKLPQKRQKTIKSFTVNEEECIGCEKCVEACPGSMI 214 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 3/66 (4%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 N CI C C CP A+ + + + R + C CG C + CP Sbjct: 303 NEFAMCIRCGACAMKCPTGALKM---GKVVHEGKEYTRVEFSPALCNECGECVDVCPQKT 359 Query: 118 IVEGPN 123 + + Sbjct: 360 LELTGD 365 Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 1/71 (1%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK-CIYCGLCQEA 112 R+P + C+ C+ C ICP + I++ + I + K C+ CG+C Sbjct: 82 NRFPYSKGHCVLCEKCVDICPVEIISLPGKAEKPKKEVVIPQEPIAVTKDCVACGVCVPE 141 Query: 113 CPVDAIVEGPN 123 CPVDAI Sbjct: 142 CPVDAISIEDI 152 Score = 37.0 bits (84), Expect = 0.98, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 12/59 (20%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C+AC +C CP AI+IE ID KCIYC +C + CP +AI Sbjct: 130 KDCVACGVCVPECPVDAISIEDIAV------------IDTDKCIYCTVCSQTCPWNAIF 176 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 23/56 (41%), Gaps = 1/56 (1%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C AC LC CP +AI +E + KC YCG C CP AI Sbjct: 229 CPACGLCVESCPVEAIGLEVEYASAKPVTDEGLVWL-EEKCAYCGPCALKCPTGAI 283 Score = 35.1 bits (79), Expect = 3.5, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 17/78 (21%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDG-----------------TRRTVRYDIDMIK 102 + CI C C CP A+ ++ G +G + R+ Sbjct: 31 FKTCIQCFSCANACPTGALIVKDGKLVFNGSKCDLDGACQKACPTGIKKVDNRFPYSKGH 90 Query: 103 CIYCGLCQEACPVDAIVE 120 C+ C C + CPV+ I Sbjct: 91 CVLCEKCVDICPVEIISL 108 >gi|145598115|ref|YP_001162191.1| pyruvate-flavodoxin oxidoreductase [Yersinia pestis Pestoides F] gi|145209811|gb|ABP39218.1| pyruvate-flavodoxin oxidoreductase [Yersinia pestis Pestoides F] Length = 1177 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 30/136 (22%), Gaps = 32/136 (23%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A + C C C A C Sbjct: 646 MLAGLGDTL------PVSAFPPDGTWPVGTTQWEKRNIAENIPIWQPDLCTQCNHCVAAC 699 Query: 74 --------------PAQAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPV-- 115 A A R +Y + C C LC E CP Sbjct: 700 PHSAIRAKVVQPEAMAGAPDSLQSLDVKARDMRGQKYILQVAPEDCTGCNLCYEVCPAKD 759 Query: 116 ------DAIVEGPNFE 125 AI P E Sbjct: 760 RQNPEIKAINMRPRLE 775 >gi|74318035|ref|YP_315775.1| electron transport complex protein RnfC [Thiobacillus denitrificans ATCC 25259] gi|74057530|gb|AAZ97970.1| Electron transport complex, RnfABCDGE type, C subunit [Thiobacillus denitrificans ATCC 25259] Length = 558 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 23/102 (22%), Positives = 36/102 (35%), Gaps = 11/102 (10%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 CI C C CPA+ E G + + + CI CG C CP I Sbjct: 367 PCIRCTRCADACPAELQPQELFRFAKAGDFGRAQ-EYHLFDCIECGCCSYVCPSH-IPLV 424 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + +A + +E+ D+ S++ R +R Sbjct: 425 DFYRYAKSE----IWAREK-----DKRASDLARERHEFRQFR 457 >gi|22125891|ref|NP_669314.1| oxidoreductase, Fe-S subunit [Yersinia pestis KIM 10] gi|45441913|ref|NP_993452.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia pestis biovar Microtus str. 91001] gi|108807678|ref|YP_651594.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia pestis Antiqua] gi|108811955|ref|YP_647722.1| pyruvate-flavodoxin oxidoreductase [Yersinia pestis Nepal516] gi|149365754|ref|ZP_01887789.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia pestis CA88-4125] gi|165926479|ref|ZP_02222311.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Yersinia pestis biovar Orientalis str. F1991016] gi|165938637|ref|ZP_02227193.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Yersinia pestis biovar Orientalis str. IP275] gi|166010705|ref|ZP_02231603.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Yersinia pestis biovar Antiqua str. E1979001] gi|166210534|ref|ZP_02236569.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Yersinia pestis biovar Antiqua str. B42003004] gi|167400853|ref|ZP_02306359.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422057|ref|ZP_02313810.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167424879|ref|ZP_02316632.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467095|ref|ZP_02331799.1| pyruvate-flavodoxin oxidoreductase [Yersinia pestis FV-1] gi|218929426|ref|YP_002347301.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia pestis CO92] gi|229837855|ref|ZP_04458014.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229895013|ref|ZP_04510191.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia pestis Pestoides A] gi|229898416|ref|ZP_04513563.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia pestis biovar Orientalis str. India 195] gi|229902263|ref|ZP_04517383.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia pestis Nepal516] gi|270490554|ref|ZP_06207628.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Yersinia pestis KIM D27] gi|294503653|ref|YP_003567715.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia pestis Z176003] gi|21958826|gb|AAM85565.1|AE013802_10 putative oxidoreductase, Fe-S subunit [Yersinia pestis KIM 10] gi|45436776|gb|AAS62329.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia pestis biovar Microtus str. 91001] gi|108775603|gb|ABG18122.1| pyruvate-flavodoxin oxidoreductase [Yersinia pestis Nepal516] gi|108779591|gb|ABG13649.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia pestis Antiqua] gi|115348037|emb|CAL20962.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia pestis CO92] gi|149292167|gb|EDM42241.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia pestis CA88-4125] gi|165913511|gb|EDR32132.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Yersinia pestis biovar Orientalis str. IP275] gi|165921700|gb|EDR38897.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Yersinia pestis biovar Orientalis str. F1991016] gi|165990407|gb|EDR42708.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Yersinia pestis biovar Antiqua str. E1979001] gi|166207714|gb|EDR52194.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Yersinia pestis biovar Antiqua str. B42003004] gi|166958869|gb|EDR55890.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049706|gb|EDR61114.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056066|gb|EDR65844.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229680598|gb|EEO76694.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia pestis Nepal516] gi|229688706|gb|EEO80775.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia pestis biovar Orientalis str. India 195] gi|229694221|gb|EEO84268.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229702108|gb|EEO90129.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia pestis Pestoides A] gi|262362229|gb|ACY58950.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia pestis D106004] gi|262365562|gb|ACY62119.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia pestis D182038] gi|270339058|gb|EFA49835.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Yersinia pestis KIM D27] gi|294354112|gb|ADE64453.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia pestis Z176003] gi|320014991|gb|ADV98562.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 1177 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 30/136 (22%), Gaps = 32/136 (23%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A + C C C A C Sbjct: 646 MLAGLGDTL------PVSAFPPDGTWPVGTTQWEKRNIAENIPIWQPDLCTQCNHCVAAC 699 Query: 74 --------------PAQAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPV-- 115 A A R +Y + C C LC E CP Sbjct: 700 PHSAIRAKVVQPEAMAGAPDSLQSLDVKARDMRGQKYILQVAPEDCTGCNLCYEVCPAKD 759 Query: 116 ------DAIVEGPNFE 125 AI P E Sbjct: 760 RQNPEIKAINMRPRLE 775 >gi|332311234|gb|EGJ24329.1| Pyruvate-flavodoxin oxidoreductase [Listeria monocytogenes str. Scott A] Length = 1215 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 34/104 (32%), Gaps = 16/104 (15%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCH 87 T+ + AL E C C C +CP AI E Sbjct: 669 PPGTAAYEKRGIALEVPEWISENCTMCNECAFVCPHAAIRPILTDEEEMESAPEGFMTRE 728 Query: 88 DGTRRTVRYDID--MIKCIYCGLCQEACPV--DAIVEGPNFEFA 127 + +RY I + C C LC E CP A+V P E A Sbjct: 729 MRGKDGLRYRIQVSPMDCTGCNLCAETCPAKDKALVMKPFEEVA 772 Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 5/80 (6%) Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV--EGPNFEFATETRQ 132 + A + G V I C C C CP AI E E+ Sbjct: 665 SGAYPPGTAAYEKRGIALEVPEWI-SENCTMCNECAFVCPHAAIRPILTDEEEM--ESAP 721 Query: 133 ELYYDKERLLNNGDRWESEI 152 E + +E +G R+ ++ Sbjct: 722 EGFMTREMRGKDGLRYRIQV 741 >gi|328475530|gb|EGF46289.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria monocytogenes 220] Length = 1116 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 34/104 (32%), Gaps = 16/104 (15%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCH 87 T+ + AL E C C C +CP AI E Sbjct: 669 PPGTAAYEKRGIALEVPEWISENCTMCNECAFVCPHAAIRPILTDGEEMESAPEGFMTRE 728 Query: 88 DGTRRTVRYDID--MIKCIYCGLCQEACPV--DAIVEGPNFEFA 127 + +RY I + C C LC E CP A+V P E A Sbjct: 729 MRGKDGLRYRIQVSPMDCTGCNLCAETCPAKDKALVMKPFEEVA 772 >gi|325968156|ref|YP_004244348.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Vulcanisaeta moutnovskia 768-28] gi|323707359|gb|ADY00846.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Vulcanisaeta moutnovskia 768-28] Length = 1137 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 20/62 (32%), Gaps = 10/62 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +C C LC CP AI G + C CG C CP DAI Sbjct: 925 DWSKCTKCGLCIKACPYGAIRGVPGK----------WIEHIPAACQGCGSCVAECPQDAI 974 Query: 119 VE 120 Sbjct: 975 TL 976 Score = 38.2 bits (87), Expect = 0.36, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 18/49 (36%) Query: 74 PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 A A T+ D KC CGLC +ACP AI P Sbjct: 900 YAAASRALMMLAQGYVTKEPFIPKFDWSKCTKCGLCIKACPYGAIRGVP 948 Score = 34.3 bits (77), Expect = 5.4, Method: Composition-based stats. Identities = 9/29 (31%), Positives = 12/29 (41%) Query: 87 HDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 R V+ C CG C++ CPV Sbjct: 89 DFKARILVKPRYVTDDCTKCGQCEDVCPV 117 >gi|313624527|gb|EFR94520.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Listeria innocua FSL J1-023] Length = 1216 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 34/104 (32%), Gaps = 16/104 (15%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCH 87 T+ + AL E C C C +CP AI E Sbjct: 669 PPGTAAYEKRGIALEVPEWISENCTMCNECAFVCPHAAIRPILTNEEEMEAAPEGFMTRE 728 Query: 88 DGTRRTVRYDID--MIKCIYCGLCQEACPV--DAIVEGPNFEFA 127 + +RY I + C C LC E CP A+V P E A Sbjct: 729 MRGKDGLRYRIQVSPMDCTGCNLCAETCPAKDKALVMKPFEEVA 772 Score = 35.5 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 25/80 (31%), Gaps = 5/80 (6%) Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV--EGPNFEFATETRQ 132 + A + G V I C C C CP AI E E Sbjct: 665 SGAYPPGTAAYEKRGIALEVPEWI-SENCTMCNECAFVCPHAAIRPILTNEEEM--EAAP 721 Query: 133 ELYYDKERLLNNGDRWESEI 152 E + +E +G R+ ++ Sbjct: 722 EGFMTREMRGKDGLRYRIQV 741 >gi|313609916|gb|EFR85316.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Listeria monocytogenes FSL F2-208] Length = 1215 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 34/104 (32%), Gaps = 16/104 (15%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCH 87 T+ + AL E C C C +CP AI E Sbjct: 669 PPGTAAYEKRGIALEVPEWISENCTMCNECAFVCPHAAIRPILTDEEEMESAPEGFMTRE 728 Query: 88 DGTRRTVRYDID--MIKCIYCGLCQEACPV--DAIVEGPNFEFA 127 + +RY I + C C LC E CP A+V P E A Sbjct: 729 MRGKDGLRYRIQVSPMDCTGCNLCAETCPAKDKALVMKPFEEVA 772 Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 5/80 (6%) Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV--EGPNFEFATETRQ 132 + A + G V I C C C CP AI E E+ Sbjct: 665 SGAYPPGTAAYEKRGIALEVPEWI-SENCTMCNECAFVCPHAAIRPILTDEEEM--ESAP 721 Query: 133 ELYYDKERLLNNGDRWESEI 152 E + +E +G R+ ++ Sbjct: 722 EGFMTREMRGKDGLRYRIQV 741 >gi|304313913|ref|YP_003849060.1| formate dehydrogenase, alpha chain [Methanothermobacter marburgensis str. Marburg] gi|302587372|gb|ADL57747.1| predicted formate dehydrogenase, alpha chain [Methanothermobacter marburgensis str. Marburg] Length = 887 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 4/63 (6%) Query: 59 GEERCIACKLCEAICP---AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 ++CI C +C +C A+A+ R DI C+ CG C EACPV Sbjct: 147 NHDKCILCGICVRVCRGLGAEAVDFAYRGHDTRIATFMDR-DILDSSCVSCGECVEACPV 205 Query: 116 DAI 118 A+ Sbjct: 206 GAL 208 >gi|294495627|ref|YP_003542120.1| CoB--CoM heterodisulfide reductase subunit A [Methanohalophilus mahii DSM 5219] gi|292666626|gb|ADE36475.1| CoB--CoM heterodisulfide reductase subunit A [Methanohalophilus mahii DSM 5219] Length = 784 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 11/66 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + CI C +C +C I IE+G +D + C CG C ACPVD Sbjct: 574 HVDYDTCIGCGVCTDVCDYGTIKIENGKAF-----------VDEVSCHGCGTCSAACPVD 622 Query: 117 AIVEGP 122 AI Sbjct: 623 AISMHN 628 Score = 38.5 bits (88), Expect = 0.32, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 28/83 (33%), Gaps = 8/83 (9%) Query: 46 RFRGEHALRRYPNGEERCIAC-KLCEAICPAQAITIES-------GPRCHDGTRRTVRYD 97 F + EE+C C C +CP + + Sbjct: 226 NFEVTGITQPRYVSEEKCKGCVDECSRVCPVEIPSRFDSGLGKSRAINIPIPQAVPQVAY 285 Query: 98 IDMIKCIYCGLCQEACPVDAIVE 120 ID C+ CGLC +ACP DA+ Sbjct: 286 IDGDYCVGCGLCAQACPADAVEF 308 >gi|289422577|ref|ZP_06424420.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Peptostreptococcus anaerobius 653-L] gi|289157149|gb|EFD05771.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Peptostreptococcus anaerobius 653-L] Length = 595 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 6/71 (8%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R + + CI CK C + ++ ID +C+ CG Sbjct: 525 RYKVKETPFEVDPTVCIGCKTC---IKTNCPPLRMKKYDGIEKLKSS---IDPNQCVGCG 578 Query: 108 LCQEACPVDAI 118 +C + CPV AI Sbjct: 579 ICAQVCPVGAI 589 >gi|255521988|ref|ZP_05389225.1| pyruvate-flavodoxin oxidoreductase [Listeria monocytogenes FSL J1-175] Length = 1215 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 34/104 (32%), Gaps = 16/104 (15%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCH 87 T+ + AL E C C C +CP AI E Sbjct: 669 PPGTAAYEKRGIALEVPEWISENCTMCNECAFVCPHAAIRPILTDEEEMESAPEGFMTRE 728 Query: 88 DGTRRTVRYDID--MIKCIYCGLCQEACPV--DAIVEGPNFEFA 127 + +RY I + C C LC E CP A+V P E A Sbjct: 729 MRGKDGLRYRIQVSPMDCTGCNLCAETCPAKDKALVMKPFEEVA 772 Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 5/80 (6%) Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV--EGPNFEFATETRQ 132 + A + G V I C C C CP AI E E+ Sbjct: 665 SGAYPPGTAAYEKRGIALEVPEWI-SENCTMCNECAFVCPHAAIRPILTDEEEM--ESAP 721 Query: 133 ELYYDKERLLNNGDRWESEI 152 E + +E +G R+ ++ Sbjct: 722 EGFMTREMRGKDGLRYRIQV 741 >gi|254992629|ref|ZP_05274819.1| pyruvate-flavodoxin oxidoreductase [Listeria monocytogenes FSL J2-064] Length = 1215 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 34/104 (32%), Gaps = 16/104 (15%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCH 87 T+ + AL E C C C +CP AI E Sbjct: 669 PPGTAAYEKRGIALEVPEWISENCTMCNECAFVCPHAAIRPILTDEEEMESAPEGFMTRE 728 Query: 88 DGTRRTVRYDID--MIKCIYCGLCQEACPV--DAIVEGPNFEFA 127 + +RY I + C C LC E CP A+V P E A Sbjct: 729 MRGKDGLRYRIQVSPMDCTGCNLCAETCPAKDKALVMKPFEEVA 772 Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 5/80 (6%) Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV--EGPNFEFATETRQ 132 + A + G V I C C C CP AI E E+ Sbjct: 665 SGAYPPGTAAYEKRGIALEVPEWI-SENCTMCNECAFVCPHAAIRPILTDEEEM--ESAP 721 Query: 133 ELYYDKERLLNNGDRWESEI 152 E + +E +G R+ ++ Sbjct: 722 EGFMTREMRGKDGLRYRIQV 741 >gi|254823903|ref|ZP_05228904.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria monocytogenes FSL J1-194] gi|293593129|gb|EFG00890.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria monocytogenes FSL J1-194] Length = 1215 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 34/104 (32%), Gaps = 16/104 (15%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCH 87 T+ + AL E C C C +CP AI E Sbjct: 669 PPGTAAYEKRGIALEVPEWISENCTMCNECAFVCPHAAIRPILTDEEEMESAPEGFMTRE 728 Query: 88 DGTRRTVRYDID--MIKCIYCGLCQEACPV--DAIVEGPNFEFA 127 + +RY I + C C LC E CP A+V P E A Sbjct: 729 MRGKDGLRYRIQVSPMDCTGCNLCAETCPAKDKALVMKPFEEVA 772 Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 5/80 (6%) Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV--EGPNFEFATETRQ 132 + A + G V I C C C CP AI E E+ Sbjct: 665 SGAYPPGTAAYEKRGIALEVPEWI-SENCTMCNECAFVCPHAAIRPILTDEEEM--ESAP 721 Query: 133 ELYYDKERLLNNGDRWESEI 152 E + +E +G R+ ++ Sbjct: 722 EGFMTREMRGKDGLRYRIQV 741 >gi|238752180|ref|ZP_04613661.1| Electron transport complex protein rnfB [Yersinia rohdei ATCC 43380] gi|238709551|gb|EEQ01788.1| Electron transport complex protein rnfB [Yersinia rohdei ATCC 43380] Length = 207 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 25/78 (32%), Gaps = 10/78 (12%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 EE CI C C CP AI + + + C C LC CP D Sbjct: 111 FIDEENCIGCTKCIQACPVDAIVGAT----------RAMHTVLPDLCTGCDLCVSPCPTD 160 Query: 117 AIVEGPNFEFATETRQEL 134 I P + +L Sbjct: 161 CIEMIPVATTTANWKWDL 178 >gi|226223447|ref|YP_002757554.1| pyruvate-flavodoxin oxidoreductase [Listeria monocytogenes Clip81459] gi|225875909|emb|CAS04613.1| Putative pyruvate-flavodoxin oxidoreductase [Listeria monocytogenes serotype 4b str. CLIP 80459] Length = 1215 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 34/104 (32%), Gaps = 16/104 (15%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCH 87 T+ + AL E C C C +CP AI E Sbjct: 669 PPGTAAYEKRGIALEVPEWISENCTMCNECAFVCPHAAIRPILTDEEEMESAPEGFMTRE 728 Query: 88 DGTRRTVRYDID--MIKCIYCGLCQEACPV--DAIVEGPNFEFA 127 + +RY I + C C LC E CP A+V P E A Sbjct: 729 MRGKDGLRYRIQVSPMDCTGCNLCAETCPAKDKALVMKPFEEVA 772 Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 5/80 (6%) Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV--EGPNFEFATETRQ 132 + A + G V I C C C CP AI E E+ Sbjct: 665 SGAYPPGTAAYEKRGIALEVPEWI-SENCTMCNECAFVCPHAAIRPILTDEEEM--ESAP 721 Query: 133 ELYYDKERLLNNGDRWESEI 152 E + +E +G R+ ++ Sbjct: 722 EGFMTREMRGKDGLRYRIQV 741 >gi|217965078|ref|YP_002350756.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Listeria monocytogenes HCC23] gi|217334348|gb|ACK40142.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Listeria monocytogenes HCC23] gi|307570362|emb|CAR83541.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria monocytogenes L99] Length = 1215 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 34/104 (32%), Gaps = 16/104 (15%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCH 87 T+ + AL E C C C +CP AI E Sbjct: 669 PPGTAAYEKRGIALEVPEWISENCTMCNECAFVCPHAAIRPILTDEEEMESAPEGFMTRE 728 Query: 88 DGTRRTVRYDID--MIKCIYCGLCQEACPV--DAIVEGPNFEFA 127 + +RY I + C C LC E CP A+V P E A Sbjct: 729 MRGKDGLRYRIQVSPMDCTGCNLCAETCPAKDKALVMKPFEEVA 772 Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 5/80 (6%) Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV--EGPNFEFATETRQ 132 + A + G V I C C C CP AI E E+ Sbjct: 665 SGAYPPGTAAYEKRGIALEVPEWI-SENCTMCNECAFVCPHAAIRPILTDEEEM--ESAP 721 Query: 133 ELYYDKERLLNNGDRWESEI 152 E + +E +G R+ ++ Sbjct: 722 EGFMTREMRGKDGLRYRIQV 741 >gi|254931210|ref|ZP_05264569.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria monocytogenes HPB2262] gi|293582758|gb|EFF94790.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria monocytogenes HPB2262] Length = 1215 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 34/104 (32%), Gaps = 16/104 (15%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCH 87 T+ + AL E C C C +CP AI E Sbjct: 669 PPGTAAYEKRGIALEVPEWISENCTMCNECAFVCPHAAIRPILTDEEEMESAPEGFMTRE 728 Query: 88 DGTRRTVRYDID--MIKCIYCGLCQEACPV--DAIVEGPNFEFA 127 + +RY I + C C LC E CP A+V P E A Sbjct: 729 MRGKDGLRYRIQVSPMDCTGCNLCAETCPAKDKALVMKPFEEVA 772 Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 5/80 (6%) Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV--EGPNFEFATETRQ 132 + A + G V I C C C CP AI E E+ Sbjct: 665 SGAYPPGTAAYEKRGIALEVPEWI-SENCTMCNECAFVCPHAAIRPILTDEEEM--ESAP 721 Query: 133 ELYYDKERLLNNGDRWESEI 152 E + +E +G R+ ++ Sbjct: 722 EGFMTREMRGKDGLRYRIQV 741 >gi|254852320|ref|ZP_05241668.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria monocytogenes FSL R2-503] gi|300765807|ref|ZP_07075782.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria monocytogenes FSL N1-017] gi|258605626|gb|EEW18234.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria monocytogenes FSL R2-503] gi|300513501|gb|EFK40573.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria monocytogenes FSL N1-017] Length = 1215 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 34/104 (32%), Gaps = 16/104 (15%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCH 87 T+ + AL E C C C +CP AI E Sbjct: 669 PPGTAAYEKRGIALEVPEWISENCTMCNECAFVCPHAAIRPILTDEEEMESAPEGFMTRE 728 Query: 88 DGTRRTVRYDID--MIKCIYCGLCQEACPV--DAIVEGPNFEFA 127 + +RY I + C C LC E CP A+V P E A Sbjct: 729 MRGKDGLRYRIQVSPMDCTGCNLCAETCPAKDKALVMKPFEEVA 772 Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 5/80 (6%) Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV--EGPNFEFATETRQ 132 + A + G V I C C C CP AI E E+ Sbjct: 665 SGAYPPGTAAYEKRGIALEVPEWI-SENCTMCNECAFVCPHAAIRPILTDEEEM--ESAP 721 Query: 133 ELYYDKERLLNNGDRWESEI 152 E + +E +G R+ ++ Sbjct: 722 EGFMTREMRGKDGLRYRIQV 741 >gi|160902189|ref|YP_001567770.1| hydrogenase, Fe-only [Petrotoga mobilis SJ95] gi|160359833|gb|ABX31447.1| hydrogenase, Fe-only [Petrotoga mobilis SJ95] Length = 578 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 3/65 (4%) Query: 59 GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115 +CI C+ CE +C Q + + S G +D+ + + C +CG C CP Sbjct: 146 DPNKCIMCRRCETMCNEFQTVGVLSAIDRGFGAVVKPSFDMPLEETACTFCGQCVAVCPT 205 Query: 116 DAIVE 120 A+VE Sbjct: 206 GALVE 210 >gi|146302966|ref|YP_001190282.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Metallosphaera sedula DSM 5348] gi|145701216|gb|ABP94358.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Metallosphaera sedula DSM 5348] Length = 109 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 26/89 (29%), Gaps = 2/89 (2%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93 + P + + C+A C CP P ++ Sbjct: 22 VYAPADPPPVPKEKALGIHGTIVGVDFDLCLADGSCINACPVNVFQWYDTPGHPASEKKA 81 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 ++ CI+C C CPV AI P Sbjct: 82 DP--VNEQACIFCMACVNVCPVAAIDVKP 108 >gi|46907060|ref|YP_013449.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria monocytogenes serotype 4b str. F2365] gi|46880326|gb|AAT03626.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria monocytogenes serotype 4b str. F2365] Length = 1215 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 34/104 (32%), Gaps = 16/104 (15%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCH 87 T+ + AL E C C C +CP AI E Sbjct: 669 PPGTAAYEKRGIALEVPEWISENCTMCNECAFVCPHAAIRPILTDEEEMESAPEGFMTRE 728 Query: 88 DGTRRTVRYDID--MIKCIYCGLCQEACPV--DAIVEGPNFEFA 127 + +RY I + C C LC E CP A+V P E A Sbjct: 729 MRGKDGLRYRIQVSPMDCTGCNLCAETCPAKDKALVMKPFEEVA 772 Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 5/80 (6%) Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV--EGPNFEFATETRQ 132 + A + G V I C C C CP AI E E+ Sbjct: 665 SGAYPPGTAAYEKRGIALEVPEWI-SENCTMCNECAFVCPHAAIRPILTDEEEM--ESAP 721 Query: 133 ELYYDKERLLNNGDRWESEI 152 E + +E +G R+ ++ Sbjct: 722 EGFMTREMRGKDGLRYRIQV 741 >gi|39995453|ref|NP_951404.1| NADH dehydrogenase I subunit G [Geobacter sulfurreducens PCA] gi|39982216|gb|AAR33677.1| NADH dehydrogenase I, G subunit, putative [Geobacter sulfurreducens PCA] gi|298504452|gb|ADI83175.1| NADH dehydrogenase I, G subunit, putative [Geobacter sulfurreducens KN400] Length = 826 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 27/90 (30%), Gaps = 4/90 (4%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 T + EK + + RC+ C C IC + Sbjct: 121 TNRFTDEKFNWKIDYVNPLI----ERDMNRCVHCGKCARICDEIVSFGAYSFINRGIEAK 176 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + C +CG C CPV A++ P Sbjct: 177 IGTEFDGPLNCEFCGSCVSVCPVGALISRP 206 >gi|16799898|ref|NP_470166.1| hypothetical protein lin0824 [Listeria innocua Clip11262] gi|16413275|emb|CAC96056.1| nifJ [Listeria innocua Clip11262] Length = 1216 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 34/104 (32%), Gaps = 16/104 (15%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCH 87 T+ + AL E C C C +CP AI E Sbjct: 669 PPGTAAYEKRGIALEVPEWISENCTMCNECAFVCPHAAIRPILTNEEEMESAPEGFMTRE 728 Query: 88 DGTRRTVRYDID--MIKCIYCGLCQEACPV--DAIVEGPNFEFA 127 + +RY I + C C LC E CP A+V P E A Sbjct: 729 MRGKDGLRYRIQVSPMDCTGCNLCAETCPAKDKALVMKPFEEVA 772 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 5/80 (6%) Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV--EGPNFEFATETRQ 132 + A + G V I C C C CP AI E E+ Sbjct: 665 SGAYPPGTAAYEKRGIALEVPEWI-SENCTMCNECAFVCPHAAIRPILTNEEEM--ESAP 721 Query: 133 ELYYDKERLLNNGDRWESEI 152 E + +E +G R+ ++ Sbjct: 722 EGFMTREMRGKDGLRYRIQV 741 >gi|16802871|ref|NP_464356.1| hypothetical protein lmo0829 [Listeria monocytogenes EGD-e] gi|224503202|ref|ZP_03671509.1| hypothetical protein LmonFR_11888 [Listeria monocytogenes FSL R2-561] gi|284801159|ref|YP_003413024.1| hypothetical protein LM5578_0908 [Listeria monocytogenes 08-5578] gi|284994301|ref|YP_003416069.1| hypothetical protein LM5923_0863 [Listeria monocytogenes 08-5923] gi|16410218|emb|CAC98907.1| nifJ [Listeria monocytogenes EGD-e] gi|284056721|gb|ADB67662.1| hypothetical protein LM5578_0908 [Listeria monocytogenes 08-5578] gi|284059768|gb|ADB70707.1| hypothetical protein LM5923_0863 [Listeria monocytogenes 08-5923] Length = 1215 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 34/104 (32%), Gaps = 16/104 (15%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCH 87 T+ + AL E C C C +CP AI E Sbjct: 669 PPGTAAYEKRGIALEVPEWISENCTMCNECAFVCPHAAIRPILTDEEEMESAPEGFMTRE 728 Query: 88 DGTRRTVRYDID--MIKCIYCGLCQEACPV--DAIVEGPNFEFA 127 + +RY I + C C LC E CP A+V P E A Sbjct: 729 MRGKDGLRYRIQVSPMDCTGCNLCAETCPAKDKALVMKPFEEVA 772 Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 5/80 (6%) Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV--EGPNFEFATETRQ 132 + A + G V I C C C CP AI E E+ Sbjct: 665 SGAYPPGTAAYEKRGIALEVPEWI-SENCTMCNECAFVCPHAAIRPILTDEEEM--ESAP 721 Query: 133 ELYYDKERLLNNGDRWESEI 152 E + +E +G R+ ++ Sbjct: 722 EGFMTREMRGKDGLRYRIQV 741 >gi|323141862|ref|ZP_08076723.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT 12067] gi|322413609|gb|EFY04467.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT 12067] Length = 240 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 32/79 (40%), Gaps = 11/79 (13%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G LR + C C C A CP A+++ G ID KC++CG Sbjct: 22 GHKRLRGQLQCDGGCDGCGACAAACPVGAVSVADGKA-----------KIDYSKCVFCGR 70 Query: 109 CQEACPVDAIVEGPNFEFA 127 C EAC A+V + A Sbjct: 71 CVEACARKALVHTNHDALA 89 >gi|268324256|emb|CBH37844.1| iron-sulfur cluster-binding protein [uncultured archaeon] Length = 678 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 11/72 (15%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 +C+ C CE +CP +A+T + + +CI CGLC++ACP Sbjct: 534 DVIIGPKCLICNACETLCPTKALTKDKNK-----------INFVYGRCIACGLCEQACPE 582 Query: 116 DAIVEGPNFEFA 127 +AI +F+ Sbjct: 583 EAITLERTLDFS 594 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 13/66 (19%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 +CI+C LC CP +AI ++ Y I C CG C CP Sbjct: 195 NIDLAKCISCGLCAGACPKEAIQYDA------------VYTIGAG-CDDCGDCVSVCPTG 241 Query: 117 AIVEGP 122 AI Sbjct: 242 AIELHN 247 >gi|225569293|ref|ZP_03778318.1| hypothetical protein CLOHYLEM_05375 [Clostridium hylemonae DSM 15053] gi|225162092|gb|EEG74711.1| hypothetical protein CLOHYLEM_05375 [Clostridium hylemonae DSM 15053] Length = 374 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 11/63 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E C+ C C+ IC A I G ID+ KC+ CG C ACP DA+ Sbjct: 192 EQEYCVGCGACQRICAHDAPVITDGKAY-----------IDLHKCVGCGRCIGACPKDAV 240 Query: 119 VEG 121 Sbjct: 241 HPT 243 >gi|222150971|ref|YP_002560124.1| formate dehydrogenase alpha subunit [Macrococcus caseolyticus JCSC5402] gi|222120093|dbj|BAH17428.1| formate dehydrogenase alpha subunit [Macrococcus caseolyticus JCSC5402] Length = 988 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 5/72 (6%) Query: 54 RRYPNGEERCIACKLCEAICPAQA-----ITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 + Y ++CI C C C + R +ID C+ CG Sbjct: 142 KFYRYDPDQCILCGRCVQACQNVQVNETLMIDWELERPRVIWDGNTDLNIDDSSCVNCGH 201 Query: 109 CQEACPVDAIVE 120 C CP +A++E Sbjct: 202 CSTVCPCNAMME 213 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 24/68 (35%), Gaps = 8/68 (11%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQA--ITIESGPRCHDGTRRT--VRYDIDMIKCIY 105 R N E C C C + I ++ + G + Y D +CI Sbjct: 94 RILRNHELYCTVCDFNNGNCTVHNTVKNLKIDHQATAQSPKGAPKNMGKFYRYDPDQCIL 153 Query: 106 CGLCQEAC 113 CG C +AC Sbjct: 154 CGRCVQAC 161 >gi|219852096|ref|YP_002466528.1| nitroreductase [Methanosphaerula palustris E1-9c] gi|219546355|gb|ACL16805.1| nitroreductase [Methanosphaerula palustris E1-9c] Length = 295 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 26/83 (31%), Gaps = 12/83 (14%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 K +G A E+C C C +C +GP +I Sbjct: 11 KKPGRDDTKGRRAGFTIHVDNEKCTRCGSCTEVCRGVLGMGNNGP------------EIV 58 Query: 100 MIKCIYCGLCQEACPVDAIVEGP 122 CI CG C CPV A+ Sbjct: 59 SPSCIRCGQCVAVCPVGALDHSN 81 >gi|73669121|ref|YP_305136.1| flavoprotein [Methanosarcina barkeri str. Fusaro] gi|72396283|gb|AAZ70556.1| archaeal flavoprotein [Methanosarcina barkeri str. Fusaro] Length = 239 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 8/69 (11%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 Y ++C C+ C E+ P + ID++KC CG+C+E C Sbjct: 144 MPYNIDRKQCRHCEDC--------PPRENCPHGAITEKNGFTDQIDLLKCKGCGICKELC 195 Query: 114 PVDAIVEGP 122 P AI GP Sbjct: 196 PYKAIKGGP 204 >gi|298376411|ref|ZP_06986366.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 3_1_19] gi|298266289|gb|EFI07947.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 3_1_19] Length = 286 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 27/77 (35%), Gaps = 11/77 (14%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 +E CI C C +CP+ T E R CI CG C + C Sbjct: 1 MTLNIDQESCIKCGKCVRVCPSDIFTQERAGETIGLVRV--------ESCIVCGHCVDVC 52 Query: 114 PVDAIVEGPNFEFATET 130 P +++ EF E Sbjct: 53 PTGSVLHS---EFPPEK 66 >gi|289450795|ref|YP_003474421.1| 4Fe-4S binding domain-containing protein [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289185342|gb|ADC91767.1| 4Fe-4S binding domain protein [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 314 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 32/92 (34%), Gaps = 19/92 (20%) Query: 34 INYPFEKGSTS----PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 I PF K F ++ +Y E +CI C C +C Q Sbjct: 209 IYRPFCKYVCPLGAMYSFFNPISIFKYRLDEAKCINCGACARVCKMQCN----------- 257 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 + + ++CI C C + CP AI G Sbjct: 258 ----PVQNCNALECIRCAQCVKVCPTGAISNG 285 >gi|271500635|ref|YP_003333660.1| RnfABCDGE type electron transport complex subunit B [Dickeya dadantii Ech586] gi|270344190|gb|ACZ76955.1| electron transport complex, RnfABCDGE type, B subunit [Dickeya dadantii Ech586] Length = 196 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 24/84 (28%), Gaps = 10/84 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E + + E CI C C CP AI + + + Sbjct: 92 EPQPLDADTPQKPEPQVAWIDEANCIGCTKCIQACPVDAIIGST----------RAVHTV 141 Query: 99 DMIKCIYCGLCQEACPVDAIVEGP 122 C C LC CP D I P Sbjct: 142 IRDLCTGCNLCVAPCPTDCIDLRP 165 >gi|261367343|ref|ZP_05980226.1| Fe-hydrogenase large subunit family protein [Subdoligranulum variabile DSM 15176] gi|282570103|gb|EFB75638.1| Fe-hydrogenase large subunit family protein [Subdoligranulum variabile DSM 15176] Length = 507 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 26/68 (38%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQ 110 + C+ C C CP AI P + R DID KC+ CG+C Sbjct: 148 HIDQSLCVKCGRCVNSCPYSAIVKTERPCAAACGMGAIHSDQYGRADIDYDKCVSCGMCL 207 Query: 111 EACPVDAI 118 CP AI Sbjct: 208 VNCPFGAI 215 Score = 39.7 bits (91), Expect = 0.12, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 5/64 (7%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-----DIDMIKCIYCGLCQEACPVDA 117 C C A + P + + + ID C+ CG C +CP A Sbjct: 109 CNRCPEKIIKVTAMCQGCLAHPCQEVCPKHAISFRNGKSHIDQSLCVKCGRCVNSCPYSA 168 Query: 118 IVEG 121 IV+ Sbjct: 169 IVKT 172 >gi|225376805|ref|ZP_03754026.1| hypothetical protein ROSEINA2194_02447 [Roseburia inulinivorans DSM 16841] gi|225211301|gb|EEG93655.1| hypothetical protein ROSEINA2194_02447 [Roseburia inulinivorans DSM 16841] Length = 375 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 21/56 (37%), Gaps = 11/56 (19%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C C IC A I ID KC+ CG C CP DAI Sbjct: 196 CIGCGACGRICAHGAPVITDHKA-----------KIDHDKCVGCGRCLAVCPKDAI 240 >gi|187776781|ref|ZP_02993254.1| hypothetical protein CLOSPO_00297 [Clostridium sporogenes ATCC 15579] gi|187775440|gb|EDU39242.1| hypothetical protein CLOSPO_00297 [Clostridium sporogenes ATCC 15579] Length = 497 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 7/69 (10%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIKCIYCGLC 109 + +C C LC+ +CP AI P R I+ CI CG C Sbjct: 135 YIDQNKCRECGLCKKVCPYNAIVEVMRPCKRVCPTGALEINPDDKRAMIEKENCINCGAC 194 Query: 110 QEACPVDAI 118 ACP AI Sbjct: 195 MGACPFGAI 203 >gi|91202378|emb|CAJ72017.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 396 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 11/62 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C C CPA A++ ++G ++D KCI C C E C AI Sbjct: 324 NHSNCTRCYECVRNCPAGAMSKDTGKV-----------EVDKKKCIGCFCCDEVCDFHAI 372 Query: 119 VE 120 Sbjct: 373 EM 374 >gi|15920962|ref|NP_376631.1| indolepyruvate oxidoreductase subunit A [Sulfolobus tokodaii str. 7] gi|15621746|dbj|BAB65740.1| 598aa long hypothetical indolepyruvate oxidoreductase subunit A [Sulfolobus tokodaii str. 7] Length = 598 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 22/72 (30%), Gaps = 10/72 (13%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 L +C C +C AI + ID + CI CG C Sbjct: 526 ELPIAEVDINKCTGCTICYDYFTCPAIIPREDKKA----------IIDPVLCIGCGACIP 575 Query: 112 ACPVDAIVEGPN 123 CP +AI Sbjct: 576 ICPYNAISLKGE 587 >gi|308273888|emb|CBX30488.1| hypothetical protein N47_K27280 [uncultured Desulfobacterium sp.] Length = 343 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 11/64 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + +CI C +CE +C AI + DI KC CG+C +C A+ Sbjct: 281 DQGKCICCGVCEEVCNWGAIKVIDD-----------TVDIVKEKCEGCGVCVCSCTEGAL 329 Query: 119 VEGP 122 Sbjct: 330 WLDN 333 Score = 33.9 bits (76), Expect = 6.9, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 21/45 (46%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 T + + T+ + +D KCI CG+C+E C AI + Sbjct: 261 TFDEAIVTYGKTKGKIVVSVDQGKCICCGVCEEVCNWGAIKVIDD 305 >gi|289756971|ref|ZP_06516349.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis T85] gi|289712535|gb|EFD76547.1| NADPH:adrenodoxin oxidoreductase fprB [Mycobacterium tuberculosis T85] Length = 179 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 3/64 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C C CP I G + ID + C+ CG C ACP Sbjct: 1 MPHVITQSCCNDASCVFACPVNCIHPTPDE---PGFATSEMLYIDPVACVDCGACVTACP 57 Query: 115 VDAI 118 V AI Sbjct: 58 VSAI 61 >gi|262381260|ref|ZP_06074398.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262296437|gb|EEY84367.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 286 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 27/77 (35%), Gaps = 11/77 (14%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 +E CI C C +CP+ T E R CI CG C + C Sbjct: 1 MTLNIDQESCIKCGKCVRVCPSDIFTQERAGETIGLVRV--------ESCIVCGHCVDVC 52 Query: 114 PVDAIVEGPNFEFATET 130 P +++ EF E Sbjct: 53 PTGSVLHS---EFPPEK 66 >gi|317047962|ref|YP_004115610.1| electron transport complex, RnfABCDGE type subunit B [Pantoea sp. At-9b] gi|316949579|gb|ADU69054.1| electron transport complex, RnfABCDGE type, B subunit [Pantoea sp. At-9b] Length = 192 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 24/84 (28%), Gaps = 10/84 (11%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 E CI C C CP AI + + + C C LC Sbjct: 105 PVRTVAWIDEANCIGCTKCIQACPVDAIVGAT----------RAMHTVLSDVCTGCDLCV 154 Query: 111 EACPVDAIVEGPNFEFATETRQEL 134 CP D I P + +L Sbjct: 155 APCPTDCIEMRPVATTTANWKWDL 178 >gi|218134605|ref|ZP_03463409.1| hypothetical protein BACPEC_02508 [Bacteroides pectinophilus ATCC 43243] gi|217989990|gb|EEC56001.1| hypothetical protein BACPEC_02508 [Bacteroides pectinophilus ATCC 43243] Length = 218 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 5/62 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + + CI C C CP I+ + + I C++CG C E CPV Sbjct: 156 YHITDACIGCGTCVQHCPQSCISCVEDAETGN-----THFSIRQEHCLHCGACYEHCPVG 210 Query: 117 AI 118 A+ Sbjct: 211 AV 212 Score = 33.9 bits (76), Expect = 8.3, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 27/92 (29%), Gaps = 8/92 (8%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI-CPAQAITIES---GPRCHDGTRRT 93 E+ + + G+ G CI E + I E+ G Sbjct: 97 EEQPYLANVYPGDTR----DIGIIFCIDEGEVEYFNLGVKPIFRETYRLGKLTETAKTGN 152 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 + CI CG C + CP I + E Sbjct: 153 HKGYHITDACIGCGTCVQHCPQSCISCVEDAE 184 >gi|218782988|ref|YP_002434306.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfatibacillum alkenivorans AK-01] gi|218764372|gb|ACL06838.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfatibacillum alkenivorans AK-01] Length = 378 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 10/74 (13%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 A E+C++C C C QA+T ++ CI CG+C Sbjct: 303 NEAWFMAVVDTEKCVSCGTCAEKCGTQAMTQGEDGSPS----------LNKDLCIGCGVC 352 Query: 110 QEACPVDAIVEGPN 123 CP +AI N Sbjct: 353 AHFCPENAISLVQN 366 >gi|110681349|ref|YP_684356.1| formate dehydrogenase, alpha subunit [Roseobacter denitrificans OCh 114] gi|109457465|gb|ABG33670.1| formate dehydrogenase, alpha subunit [Roseobacter denitrificans OCh 114] Length = 925 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 5/67 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114 + CI C LC C + G +D + C+ CG C +ACP Sbjct: 147 NLDACIQCGLCVRACR-DVQVNDVIGMAGRGHDAYPTFDFADPMGESTCVACGECVQACP 205 Query: 115 VDAIVEG 121 A++ Sbjct: 206 TGALMPS 212 >gi|54298873|ref|YP_125242.1| hypothetical protein lpp2940 [Legionella pneumophila str. Paris] gi|53752658|emb|CAH14093.1| hypothetical protein lpp2940 [Legionella pneumophila str. Paris] Length = 204 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 13/93 (13%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C CP AI S + + I +C CGLC + CPVD I Sbjct: 82 DECIGCTKCIKACPVDAIIGSSK----------LMHAIIAHECTGCGLCVDPCPVDCIEM 131 Query: 121 GPNFEFATETRQ--ELYYDKERLLNNGDRWESE 151 A + Y+ +++ D E + Sbjct: 132 VS-LPAAGYDKDLARQRYNAKQMRQLRDEHEKQ 163 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 15/35 (42%), Positives = 17/35 (48%) Query: 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 D TR I +CI C C +ACPVDAI Sbjct: 65 KEAIDNTRPPSVAAIKEDECIGCTKCIKACPVDAI 99 >gi|51894302|ref|YP_076993.1| pyruvate flavodoxin dehydrogenase [Symbiobacterium thermophilum IAM 14863] gi|51857991|dbj|BAD42149.1| pyruvate flavodoxin dehydrogenase [Symbiobacterium thermophilum IAM 14863] Length = 1183 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 28/107 (26%), Gaps = 24/107 (22%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPR 85 +T+ + L + CI C C +CP A Sbjct: 669 PTATTQWEKRSIGLEVPVWDPDVCIQCGKCVLVCPHAVIRAKVADEADLASAPEGFKHMP 728 Query: 86 CHDGTRRTVRYDID--MIKCIYCGLCQEACPV--------DAIVEGP 122 RY I + C C LC EACP AI Sbjct: 729 ARFRELPGKRYTIQVSIEDCTGCALCVEACPAKSKQDPSHKAINMTD 775 >gi|238796520|ref|ZP_04640028.1| Electron transport complex protein rnfB [Yersinia mollaretii ATCC 43969] gi|238719725|gb|EEQ11533.1| Electron transport complex protein rnfB [Yersinia mollaretii ATCC 43969] Length = 207 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 24/78 (30%), Gaps = 10/78 (12%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C C CP AI + + + C C LC CP D Sbjct: 111 FIDEANCIGCTKCIQACPVDAIVGAT----------RAMHTVLPDLCTGCDLCVAPCPTD 160 Query: 117 AIVEGPNFEFATETRQEL 134 I P + +L Sbjct: 161 CIEMIPVATTTANWKWDL 178 >gi|291483725|dbj|BAI84800.1| hypothetical protein BSNT_02062 [Bacillus subtilis subsp. natto BEST195] Length = 490 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 36/101 (35%), Gaps = 9/101 (8%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 ++ + PF+ + + + Y ++CI C C C +T Sbjct: 114 TVKEM--KINHQSIPFDHKP----YHKDESHPFYRYDPDQCILCGRCVEACQDVQVTETL 167 Query: 83 GPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPVDAIVE 120 R + + I+ C+ CG C CP +A++E Sbjct: 168 TIDWERKRPRVIWDNDVPINESSCVSCGHCSTVCPCNAMME 208 Score = 38.2 bits (87), Expect = 0.40, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 21/66 (31%), Gaps = 9/66 (13%) Query: 57 PNGEERCIAC----KLCEAICPA-----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 N E C C CE +I + + Y D +CI CG Sbjct: 93 YNHELYCTVCDYNNGGCEIHNTVKEMKINHQSIPFDHKPYHKDESHPFYRYDPDQCILCG 152 Query: 108 LCQEAC 113 C EAC Sbjct: 153 RCVEAC 158 >gi|221640575|ref|YP_002526837.1| Formate dehydrogenase subunit alpha [Rhodobacter sphaeroides KD131] gi|221161356|gb|ACM02336.1| Formate dehydrogenase, alpha subunit [Rhodobacter sphaeroides KD131] Length = 960 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 29/92 (31%), Gaps = 4/92 (4%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDID 99 + + + +CI C C C A+TIE + Sbjct: 162 PKWMAKDESNPYFTYDPSKCIVCSRCVRACEEVQGTFALTIEGRGFDSRVSAGMASDSFL 221 Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 C+ CG C +ACP + E E T R Sbjct: 222 TSDCVSCGACVQACPTATLQEKSMIEIGTPER 253 >gi|21228736|ref|NP_634658.1| putative pyruvate:ferredoxin oxidoreductase [Methanosarcina mazei Go1] gi|20907247|gb|AAM32330.1| putative pyruvate:ferredoxin oxidoreductase [Methanosarcina mazei Go1] Length = 623 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 15/87 (17%) Query: 40 KGSTSPRFRGEHA-----LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 KG ++ F+G+ + R+ E C C LC A+ + +G Sbjct: 543 KGPSAVVFKGKCVGITKPVIRFEIDTESCTGCGLCVKQLGCPALFLPAGEEKP------- 595 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEG 121 + C CGLC + CP AI+E Sbjct: 596 ---VIQDSCSGCGLCAQVCPSGAIIET 619 >gi|54309722|ref|YP_130742.1| electron transport complex protein RnfB [Photobacterium profundum SS9] gi|46914160|emb|CAG20940.1| Putative RnfB-related protein [Photobacterium profundum SS9] Length = 192 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 10/78 (12%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E+ CI C C CP AI + + + +C C LC CP D Sbjct: 107 FIHEDMCIGCTKCIQACPVDAIVGGTK----------SMHTVIKDECTGCDLCVAPCPTD 156 Query: 117 AIVEGPNFEFATETRQEL 134 I P + + +L Sbjct: 157 CIEMIPVKDTPESWKWDL 174 >gi|116750125|ref|YP_846812.1| RnfABCDGE type electron transport complex subunit C [Syntrophobacter fumaroxidans MPOB] gi|116699189|gb|ABK18377.1| electron transport complex, RnfABCDGE type, C subunit [Syntrophobacter fumaroxidans MPOB] Length = 440 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 32/112 (28%), Gaps = 13/112 (11%) Query: 13 LKEFVGAFFLCLRYFFKAKT----------TINYPFEKGSTSPRFRGEHALRRYPNGEER 62 L + V + + T + P K ++ F + + Sbjct: 314 LSDIVTFLGGTMDNLARIVVGGPMMGFSIPTTDLPVMKTTSGVLFLSDDEI--DSRPHGP 371 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 CI C C +C E G G R + +C CG C CP Sbjct: 372 CIRCGKCVEVCSMGLSPNEVGIYVEAGRARDTA-QFGVFECFECGACAFVCP 422 >gi|330877327|gb|EGH11476.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv. morsprunorum str. M302280PT] Length = 291 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 10/74 (13%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 RGE + E CI C C CP AI + + + + + +C C Sbjct: 76 RGEAPAQVAFIREAECIGCTKCIQACPVDAILGAAK----------LMHTVIIDECTGCD 125 Query: 108 LCQEACPVDAIVEG 121 LC CPVD I Sbjct: 126 LCVAPCPVDCIEMH 139 >gi|325497183|gb|EGC95042.1| electron transport complex protein RnfC [Escherichia fergusonii ECD227] Length = 726 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 35/112 (31%), Gaps = 9/112 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G ++ CI CG C CP Sbjct: 371 PQEEQGCIRCSSCADACPAD-LLPQQLYWFSKGQLHDKATAHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQELYY--DKERLLNNGDRWESEIVRNIVTDSP 161 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEERRAAEAKARFEARQARLEREKAARLERHKK 480 >gi|324113403|gb|EGC07378.1| electron transporter [Escherichia fergusonii B253] Length = 627 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 35/112 (31%), Gaps = 9/112 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G ++ CI CG C CP Sbjct: 371 PQEEQGCIRCSSCADACPAD-LLPQQLYWFSKGQLHDKATAHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQELYY--DKERLLNNGDRWESEIVRNIVTDSP 161 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEERRAAEAKARFEARQARLEREKAARLERHKK 480 >gi|323703766|ref|ZP_08115405.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfotomaculum nigrificans DSM 574] gi|323531290|gb|EGB21190.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfotomaculum nigrificans DSM 574] Length = 368 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 10/60 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+C C+ C CPA AI++ + I C+ CG C +CP AI Sbjct: 191 DLEKCTGCRKCHQWCPAGAISMGEDKKSF----------IAAELCMGCGECTVSCPFGAI 240 Score = 37.0 bits (84), Expect = 0.97, Method: Composition-based stats. Identities = 12/37 (32%), Positives = 16/37 (43%) Query: 87 HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 V+ ID+ KC C C + CP AI G + Sbjct: 179 KQMMHSDVKPAIDLEKCTGCRKCHQWCPAGAISMGED 215 >gi|313157389|gb|EFR56812.1| 4Fe-4S binding domain protein [Alistipes sp. HGB5] Length = 290 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 22/64 (34%), Gaps = 8/64 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI C C +CP+Q E + CI CG C ACP A+ Sbjct: 9 NDAICIRCGRCVKVCPSQIFVQEKAGAAVTLHK--------PENCIVCGHCAAACPTGAV 60 Query: 119 VEGP 122 Sbjct: 61 EHAD 64 >gi|307297315|ref|ZP_07577121.1| iron-sulfur cluster-binding protein [Thermotogales bacterium mesG1.Ag.4.2] gi|306916575|gb|EFN46957.1| iron-sulfur cluster-binding protein [Thermotogales bacterium mesG1.Ag.4.2] Length = 357 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 27/63 (42%), Positives = 33/63 (52%), Gaps = 13/63 (20%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ERC +C++CE CPA+AI I R+ ID KCI C +C E CP DAI Sbjct: 303 DRERCRSCRVCENACPAKAIDIN-------------RFAIDYNKCITCYVCHELCPEDAI 349 Query: 119 VEG 121 V Sbjct: 350 VFT 352 >gi|325679199|ref|ZP_08158790.1| 4Fe-4S binding domain protein [Ruminococcus albus 8] gi|324109128|gb|EGC03353.1| 4Fe-4S binding domain protein [Ruminococcus albus 8] Length = 478 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110 + +C+ C C +CP AIT P + + + + ID KCI CG C Sbjct: 126 HIDKSKCVECGRCSKVCPYSAITNRVRPCQNACKIKAISINEDGGAAIDNEKCISCGACV 185 Query: 111 EACPVDAI 118 CP AI Sbjct: 186 YQCPFGAI 193 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 12/64 (18%) Query: 57 PNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C C CE +CP AI+ + H ID KC+ CG C + CP Sbjct: 94 YEVTDSCRGCLAHRCEDVCPRGAISFDHNHVAH----------IDKSKCVECGRCSKVCP 143 Query: 115 VDAI 118 AI Sbjct: 144 YSAI 147 >gi|163782829|ref|ZP_02177825.1| NADH dehydrogenase I chain G [Hydrogenivirga sp. 128-5-R1-1] gi|159881950|gb|EDP75458.1| NADH dehydrogenase I chain G [Hydrogenivirga sp. 128-5-R1-1] Length = 628 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 2/64 (3%) Query: 61 ERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RC+ C C C A + R D +D C CG+C CPV AI Sbjct: 152 NRCVVCYRCTRACDEIVGAHALYVENRGFDSNIVPTVRPMDTSTCEMCGICVHVCPVGAI 211 Query: 119 VEGP 122 + P Sbjct: 212 ISKP 215 >gi|91202272|emb|CAJ75332.1| similar to NAD(P) oxidoreductase, FAD-containing subunit [Candidatus Kuenenia stuttgartiensis] Length = 581 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 27/87 (31%), Gaps = 5/87 (5%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT----IESGPRCHDGTRRT 93 E + R C+ C C +CP A+ + + Sbjct: 481 DEFQAAREANRCLKCDLTINVETNECVLCGRCSMVCPVGALKQVDAFDQSKEHKPFMSKD 540 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVE 120 KCI CG C++ CPV+ I Sbjct: 541 GIVIKYTDKCIRCGNCKD-CPVNVISM 566 Score = 37.4 bits (85), Expect = 0.71, Method: Composition-based stats. Identities = 10/60 (16%), Positives = 26/60 (43%) Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 + ++ + + + +++ +C+ CG C CPV A+ + F+ + E + Sbjct: 475 LVELGLDEFQAAREANRCLKCDLTINVETNECVLCGRCSMVCPVGALKQVDAFDQSKEHK 534 >gi|37679744|ref|NP_934353.1| quinol dehydrogenase membrane component [Vibrio vulnificus YJ016] gi|37198489|dbj|BAC94324.1| polyferredoxin [Vibrio vulnificus YJ016] Length = 284 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 23/73 (31%), Gaps = 8/73 (10%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 LR E C C C IC P + + CI CG C + Sbjct: 214 VLRISAENREACTKCMDCYNIC--------PEPEVLRQPLKEGDRRVMDQNCISCGRCID 265 Query: 112 ACPVDAIVEGPNF 124 CP + +V F Sbjct: 266 VCPENVLVFTHRF 278 >gi|150391799|ref|YP_001321848.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF] gi|149951661|gb|ABR50189.1| NADH dehydrogenase (quinone) [Alkaliphilus metalliredigens QYMF] Length = 596 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 10/58 (17%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C LC CP AI E R + I+ CI CG C + CP AI Sbjct: 546 DDCKGCTLCVKACPVDAIHGE----------RKAVHLINTDTCIKCGACVDKCPFKAI 593 Score = 37.4 bits (85), Expect = 0.75, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 17/40 (42%) Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 C G + + + C C LC +ACPVDAI Sbjct: 525 HVKEKSCPAGVCQALTNYVITDDCKGCTLCVKACPVDAIH 564 >gi|331083627|ref|ZP_08332738.1| hypothetical protein HMPREF0992_01662 [Lachnospiraceae bacterium 6_1_63FAA] gi|330403838|gb|EGG83390.1| hypothetical protein HMPREF0992_01662 [Lachnospiraceae bacterium 6_1_63FAA] Length = 860 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 37/127 (29%), Gaps = 24/127 (18%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P G R E+C CK+C +E + + Sbjct: 690 CPNNCVKPDLNDLGIIGQRIPQVDMEKCRGCKIC---------RVEKNCPINVAKVVDGK 740 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRN 155 ID C +CG C CP +A FE T Y G RW ++ + Sbjct: 741 IVIDENSCNHCGRCIGKCPFNA------FE--DYTNGYRIY-------IGGRWGKKVAQG 785 Query: 156 IVTDSPY 162 + + Sbjct: 786 RYLEKVF 792 >gi|300786460|ref|YP_003766751.1| formate dehydrogenase alpha subunit [Amycolatopsis mediterranei U32] gi|299795974|gb|ADJ46349.1| formate dehydrogenase alpha subunit [Amycolatopsis mediterranei U32] Length = 285 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 29/86 (33%), Gaps = 8/86 (9%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI----DMIKCIYCGLCQE 111 Y +CI C C C Q + G + + C+YCG C E Sbjct: 145 YVRDYGKCILCYKCVDACGEQWQNSFAITVAGRGFDARISTEFSSPLPDSACVYCGNCVE 204 Query: 112 ACPVDAIVEGPNFEFATETRQELYYD 137 CP A+ + R++ +D Sbjct: 205 VCPTGALSFKRECD----KREDGTWD 226 Score = 33.5 bits (75), Expect = 9.7, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 2/50 (4%) Query: 63 CIACKLCEAICPAQAITIESG-PRCHDGTRRTVRYDIDMIKCIYCGL-CQ 110 C+ C C +CP A++ + + DGT R C +CG+ C Sbjct: 196 CVYCGNCVEVCPTGALSFKRECDKREDGTWDESRQTATTTICTFCGVGCA 245 >gi|220932451|ref|YP_002509359.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Halothermothrix orenii H 168] gi|219993761|gb|ACL70364.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Halothermothrix orenii H 168] Length = 57 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 11/66 (16%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + CI C CE CP AI+ Y+ID CI CG C E CP Sbjct: 1 MAHVISDECIMCGACEPECPVDAISQGDNK-----------YEIDPDTCIDCGACAEVCP 49 Query: 115 VDAIVE 120 V+AI E Sbjct: 50 VEAISE 55 >gi|330508800|ref|YP_004385228.1| NADH:ubiquinone oxidoreductase, nadh-binding subunit [Methanosaeta concilii GP-6] gi|328929608|gb|AEB69410.1| NADH:ubiquinone oxidoreductase, nadh-binding subunit [Methanosaeta concilii GP-6] Length = 628 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 15/93 (16%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 +RY F+ + + ++ +L Y E CI C LC CP AI + Sbjct: 534 TIRY-FREEYDAHIKDKRCPALSC----KSLVSYSIDPEICIGCDLCRENCPQGAIYKDD 588 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 G +D KC+ CG+C E CP Sbjct: 589 GGFAV----------VDQSKCMRCGICFEICPK 611 Score = 39.3 bits (90), Expect = 0.16, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 19/44 (43%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 I+ + V Y ID CI C LC+E CP AI + Sbjct: 545 HIKDKRCPALSCKSLVSYSIDPEICIGCDLCRENCPQGAIYKDD 588 >gi|301029281|ref|ZP_07192385.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 196-1] gi|299877809|gb|EFI86020.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 196-1] Length = 520 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 315 PQEEQSCIRCSACADACPADLLPQQLY-WFSKGQQHDKATTHNIADCIECGACAWVCP-S 372 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 373 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 421 >gi|297618249|ref|YP_003703408.1| ferredoxin [Syntrophothermus lipocalidus DSM 12680] gi|297146086|gb|ADI02843.1| ferredoxin [Syntrophothermus lipocalidus DSM 12680] Length = 247 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 25/62 (40%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 PN ERCI C+LC C + S R YD CI C C + CP Sbjct: 117 PNEGERCILCRLCVKACEKMGASAISAVFRGTSKRIGTPYDEASADCIGCAACAQVCPTG 176 Query: 117 AI 118 AI Sbjct: 177 AI 178 >gi|261343672|ref|ZP_05971317.1| electron transport complex, RnfABCDGE type, B subunit [Providencia rustigianii DSM 4541] gi|282568055|gb|EFB73590.1| electron transport complex, RnfABCDGE type, B subunit [Providencia rustigianii DSM 4541] Length = 204 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 26/76 (34%), Gaps = 10/76 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 EE CI C C CP AI + + + C C LC CP D I Sbjct: 113 DEENCIGCTKCIQACPVDAIVGAT----------RAMHTVIEDLCTGCDLCVAPCPTDCI 162 Query: 119 VEGPNFEFATETRQEL 134 P T + +L Sbjct: 163 EMVPVKTTTTNWKWDL 178 Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 2/49 (4%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + I+ + R+ ID CI C C +ACPVDAI Sbjct: 86 AELMNVDPQPIDGDENAQNPVRKVAV--IDEENCIGCTKCIQACPVDAI 132 >gi|254284151|ref|ZP_04959119.1| electron transport complex protein RnfB [gamma proteobacterium NOR51-B] gi|219680354|gb|EED36703.1| electron transport complex protein RnfB [gamma proteobacterium NOR51-B] Length = 200 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 29/84 (34%), Gaps = 10/84 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E E E+ CI C C CP AI + + + + Sbjct: 97 EPEPLDAEHGVEKEPAVAYIREDECIGCTKCIQACPVDAILGAAK----------LMHTV 146 Query: 99 DMIKCIYCGLCQEACPVDAIVEGP 122 + +C C LC E CPVD I P Sbjct: 147 IVDECTGCDLCVEPCPVDCIDMIP 170 >gi|220935790|ref|YP_002514689.1| electron transport complex, RnfABCDGE type, B subunit [Thioalkalivibrio sp. HL-EbGR7] gi|219997100|gb|ACL73702.1| electron transport complex, RnfABCDGE type, B subunit [Thioalkalivibrio sp. HL-EbGR7] Length = 186 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 10/65 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ CI C LC CP AI + + + +C C LC E CPVD I Sbjct: 108 DEQVCIGCTLCIQACPVDAILGAAKQ----------MHTVIESECTGCELCIEPCPVDCI 157 Query: 119 VEGPN 123 P Sbjct: 158 DMVPI 162 Score = 37.0 bits (84), Expect = 0.83, Method: Composition-based stats. Identities = 15/35 (42%), Positives = 17/35 (48%) Query: 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 T+ ID CI C LC +ACPVDAI Sbjct: 93 KPVEGETKPPSVAIIDEQVCIGCTLCIQACPVDAI 127 >gi|163740593|ref|ZP_02147987.1| iron-sulfur cluster-binding protein [Phaeobacter gallaeciensis 2.10] gi|161386451|gb|EDQ10826.1| iron-sulfur cluster-binding protein [Phaeobacter gallaeciensis 2.10] Length = 629 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 34/119 (28%), Gaps = 14/119 (11%) Query: 23 CLRYFFKAKTTINYP-FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 R + P E L N C C C ++CP+ A+ Sbjct: 444 TRRQITRQAAKALVPTAETLPLPEGAPYGAVLVSSDN----CTLCLSCVSLCPSGALGDN 499 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140 + C+ CGLC CP DAI ++ ++ +E Sbjct: 500 PD---------LPQLRFQEDACLQCGLCATICPEDAITYESRLNLTSDALSQVVLHEEE 549 Score = 37.4 bits (85), Expect = 0.59, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 19/55 (34%), Gaps = 11/55 (20%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C ICP AI+ ID + C CG C CP AI Sbjct: 256 TGCTRCLDICPTGAISPAGD-----------HVSIDPMICAGCGSCASLCPSGAI 299 >gi|126465606|ref|YP_001040715.1| cobyrinic acid a,c-diamide synthase [Staphylothermus marinus F1] gi|126014429|gb|ABN69807.1| Cobyrinic acid a,c-diamide synthase [Staphylothermus marinus F1] Length = 329 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 27/78 (34%), Gaps = 12/78 (15%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 R +E+CI C C CP A+ + + Y I+ C C C C Sbjct: 68 RYAEIVQEKCINCGECMNACPFNAVELINNK-----------YVINKWICEGCYTCSFVC 116 Query: 114 PVDAIVEGPNFEFATETR 131 P AI + A R Sbjct: 117 PTKAIRIIRDI-VAGYVR 133 >gi|27365991|ref|NP_761519.1| quinol dehydrogenase membrane component [Vibrio vulnificus CMCP6] gi|27362191|gb|AAO11046.1| Polyferredoxin NapH (periplasmic nitrate reductase) [Vibrio vulnificus CMCP6] Length = 284 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 23/73 (31%), Gaps = 8/73 (10%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 LR E C C C +C P + + CI CG C + Sbjct: 214 VLRISAENREACTKCMDCYNVC--------PEPEVLRQPLKEGDRRVMDQNCISCGRCID 265 Query: 112 ACPVDAIVEGPNF 124 CP + +V F Sbjct: 266 VCPENVLVFTHRF 278 >gi|330836087|ref|YP_004410728.1| glycyl-radical enzyme activating protein family [Spirochaeta coccoides DSM 17374] gi|329747990|gb|AEC01346.1| glycyl-radical enzyme activating protein family [Spirochaeta coccoides DSM 17374] Length = 297 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 28/79 (35%), Gaps = 12/79 (15%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 K G + CI C +C CP +A+ ++ R ID Sbjct: 31 KCPWCQNPEGIKQHISLWHSPSACIQCGICVETCPERALELDG------------RIHID 78 Query: 100 MIKCIYCGLCQEACPVDAI 118 C CG+C E CP A+ Sbjct: 79 KKHCTGCGMCIEKCPAAAM 97 Score = 37.8 bits (86), Expect = 0.48, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 17/45 (37%) Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + +G ++ + CI CG+C E CP A+ Sbjct: 27 GCPLKCPWCQNPEGIKQHISLWHSPSACIQCGICVETCPERALEL 71 >gi|330506904|ref|YP_004383332.1| iron sulfur cluster/nucleotide binding domain-containing protein [Methanosaeta concilii GP-6] gi|328927712|gb|AEB67514.1| iron sulfur cluster/nucleotide binding domain protein [Methanosaeta concilii GP-6] Length = 284 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 15/75 (20%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R + ++R +E+CI C +C+ C AI ++++ C CG Sbjct: 54 REFYGIKRAFIDKEKCIQCGICQDSCRFGAIAD---------------FEVETPLCEGCG 98 Query: 108 LCQEACPVDAIVEGP 122 +CQ CP DA+ Sbjct: 99 VCQLVCPEDAVDMRD 113 >gi|327484144|gb|AEA78551.1| Iron-sulfur cluster-binding protein [Vibrio cholerae LMA3894-4] Length = 504 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 9/75 (12%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C A+CP +A+ C+ CGLC +ACP A+ Sbjct: 369 SDCTLCMSCVAVCPTRALHPAGDSPA---------LRFIEQDCVQCGLCVKACPEQALSA 419 Query: 121 GPNFEFATETRQELY 135 P + RQ + Sbjct: 420 TPQLNWNKAARQGVV 434 Score = 40.1 bits (92), Expect = 0.094, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 12/80 (15%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 C+ C CPA A++ E + R I+ C G C ACP +AI Sbjct: 137 CERCVDACPAGALSSEGSDQTGH------RIQINPYLCQGVGTCATACPTEAIH------ 184 Query: 126 FATETRQELYYDKERLLNNG 145 +A + ERLL N Sbjct: 185 YALPNPTDTQKFIERLLANY 204 Score = 33.5 bits (75), Expect = 9.7, Method: Composition-based stats. Identities = 6/23 (26%), Positives = 8/23 (34%) Query: 97 DIDMIKCIYCGLCQEACPVDAIV 119 + C C C CP A+ Sbjct: 365 ECQASDCTLCMSCVAVCPTRALH 387 >gi|325528986|gb|EGD06007.1| ferredoxin [Burkholderia sp. TJI49] Length = 167 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 22/66 (33%), Gaps = 10/66 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C LC CP AI + I C C LC CPVD Sbjct: 81 FIDESLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVESLCTGCDLCVPPCPVD 130 Query: 117 AIVEGP 122 I P Sbjct: 131 CIAMVP 136 >gi|325261753|ref|ZP_08128491.1| nitroreductase family protein fused to ferredoxin domain protein [Clostridium sp. D5] gi|324033207|gb|EGB94484.1| nitroreductase family protein fused to ferredoxin domain protein [Clostridium sp. D5] Length = 264 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 25/72 (34%), Gaps = 13/72 (18%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + CI C C A CP A+ I G G C CG C CP Sbjct: 1 MIEMNRDLCIGCGKCAADCPVGALHIIEGKAEFSGP------------CFQCGHCVAVCP 48 Query: 115 VDAIVEGPNFEF 126 V A+ P +E Sbjct: 49 VRAVAI-PEYEM 59 >gi|312883748|ref|ZP_07743468.1| electron transport complex protein RnfB [Vibrio caribbenthicus ATCC BAA-2122] gi|309368598|gb|EFP96130.1| electron transport complex protein RnfB [Vibrio caribbenthicus ATCC BAA-2122] Length = 196 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 25/79 (31%), Gaps = 10/79 (12%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103 S G E+ CI C C CP AI + + + +C Sbjct: 95 SAHDLGNEVKTVAFIHEDMCIGCTKCIQACPVDAIVGGTK----------ALHTVIKDEC 144 Query: 104 IYCGLCQEACPVDAIVEGP 122 C LC CP D I P Sbjct: 145 TGCDLCVAPCPTDCIEMIP 163 >gi|288560652|ref|YP_003424138.1| energy-converting hydrogenase A subunit Q EhaQ [Methanobrevibacter ruminantium M1] gi|288543362|gb|ADC47246.1| energy-converting hydrogenase A subunit Q EhaQ [Methanobrevibacter ruminantium M1] Length = 483 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 26/105 (24%), Positives = 38/105 (36%), Gaps = 6/105 (5%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P++ ++ C AC C C + AI ++S Sbjct: 67 CPYDAIHIKKTLSEPIRENVPNINKKLCRACGACVNACKSGAIHLKSTGGEEM------H 120 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140 +ID KCI CG C ACP DAI G + + L D ++ Sbjct: 121 SEIDENKCIRCGYCFRACPTDAIKYGEILPKTVKEGKTLCIDHDQ 165 Score = 38.9 bits (89), Expect = 0.20, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 36/79 (45%), Gaps = 10/79 (12%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E CI+C LC +CP ++I+++ T C+YCGLC EAC +AI Sbjct: 346 ENCISCGLCMDVCPTKSISLDGPNPIKIDT---------DNSCVYCGLCAEACNFEAIKL 396 Query: 121 GPNFEFATETRQELYYDKE 139 F F + + ++ Sbjct: 397 AEEF-FTNRNHEIFFIKRD 414 Score = 38.2 bits (87), Expect = 0.38, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 23/69 (33%), Gaps = 8/69 (11%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 ++CI C C ICP+ + + ID C C C ACP Sbjct: 160 CIDHDQCIGCMTCTRICPS--------KGAINVGKTNKLPFIDPAYCARCEECMHACPTY 211 Query: 117 AIVEGPNFE 125 AI E Sbjct: 212 AIDYVEREE 220 Score = 37.4 bits (85), Expect = 0.68, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 31/89 (34%), Gaps = 13/89 (14%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGT-----------RRTVRYDIDMIKCIYC 106 + + C+ C LC C +AI + + RR +I+ C C Sbjct: 374 DTDNSCVYCGLCAEACNFEAIKLAEEFFTNRNHEIFFIKRDLRGRRNGTVEINHSACQLC 433 Query: 107 GLCQEACPVDAIVEGPNFEFATETRQELY 135 +C + CPVDA + T E Sbjct: 434 EVCIKNCPVDA--MSVEDDMITVNHDECI 460 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 3/60 (5%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E C C LC CP AI I + R +I+ C CG C AC AI Sbjct: 55 EHCFGCVLCSNACPYDAIHI---KKTLSEPIRENVPNINKKLCRACGACVNACKSGAIHL 111 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 11/68 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C++C CP A+++E ++ +CI C C+ CPV+A Sbjct: 426 NHSACQLCEVCIKNCPVDAMSVEDD-----------MITVNHDECISCRNCEGICPVNAA 474 Query: 119 VEGPNFEF 126 ++F Sbjct: 475 RVSTIWQF 482 Score = 33.5 bits (75), Expect = 8.9, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 25/73 (34%), Gaps = 12/73 (16%) Query: 52 ALRRYPNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 Y E+CI C K C +CP A+ + + C C LC Sbjct: 14 VHIEYEIDNEKCINCSDKPCLGVCPIDAVYQDENTKLIK----------LDEHCFGCVLC 63 Query: 110 QEACPVDAIVEGP 122 ACP DAI Sbjct: 64 SNACPYDAIHIKK 76 >gi|317152497|ref|YP_004120545.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2] gi|316942748|gb|ADU61799.1| response regulator receiver [Desulfovibrio aespoeensis Aspo-2] Length = 1157 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 13/83 (15%) Query: 59 GEERCIACKLCEAICPAQAI-------TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 RC++C C +CP + T+ + Y +D+ C C C E Sbjct: 113 DPARCVSCGKCSEVCPVRVPSEYNAGLTMRAAVHLPVPHAIPNHYVVDLENCQRCWKCHE 172 Query: 112 ACPVDAIVEGPNFEFATETRQEL 134 ACP AI +F + R++ Sbjct: 173 ACPTGAI------DFKFDERKDF 189 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 9/58 (15%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 C C+ C A CP A +++ R +D I C CG C CP A Sbjct: 1086 HSLCSLCQACVAACPYGARSLDMDA---------GRIAVDEILCQGCGACAAVCPNSA 1134 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 10/19 (52%), Positives = 12/19 (63%) Query: 98 IDMIKCIYCGLCQEACPVD 116 ID +C+ CG C E CPV Sbjct: 112 IDPARCVSCGKCSEVCPVR 130 >gi|257469060|ref|ZP_05633154.1| dihydroorotate dehydrogenase family protein [Fusobacterium ulcerans ATCC 49185] gi|317063306|ref|ZP_07927791.1| dihydroorotate dehydrogenase [Fusobacterium ulcerans ATCC 49185] gi|313688982|gb|EFS25817.1| dihydroorotate dehydrogenase [Fusobacterium ulcerans ATCC 49185] Length = 365 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 11/60 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++CI C +C+ +C +AI I I+ KC CG+C CP A+ Sbjct: 315 DKCIGCGICKTVCGYKAIEIVEKKAV-----------INKDKCFGCGVCVSKCPTKAMDI 363 >gi|326201103|ref|ZP_08190975.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Clostridium papyrosolvens DSM 2782] gi|325988671|gb|EGD49495.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Clostridium papyrosolvens DSM 2782] Length = 1175 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 35/114 (30%), Gaps = 28/114 (24%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE----------------SGPRC 86 TS + A+ E CI C +C +CP I Sbjct: 669 TSAYEKRGIAVNVPEWQPESCIQCNICSLVCPHAVIRPTLATEDELKAAPEAFVTKKAVG 728 Query: 87 HDGTRRTVRYDIDMIKCIYCGLCQEACPV--DAIVEG----------PNFEFAT 128 R I + C CG C + CP A+V PN+++AT Sbjct: 729 KGMEEYQFRIQISPMDCTGCGNCADVCPAKPKALVMKKLSTQTEREIPNYDYAT 782 >gi|242237505|ref|YP_002985686.1| dihydropyrimidine dehydrogenase [Dickeya dadantii Ech703] gi|242129562|gb|ACS83864.1| dihydroorotate dehydrogenase family protein [Dickeya dadantii Ech703] Length = 437 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 31/76 (40%), Gaps = 6/76 (7%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 R+ + + + + CI C C C + ++ R +G R +++ C+ Sbjct: 329 RYLNLNHIDKAVIDQSLCIKCGRCHLACED--TSHQAITRQKNGER---HFEVKEEDCVG 383 Query: 106 CGLCQEACPV-DAIVE 120 C LC CPV + I Sbjct: 384 CNLCVSICPVENCISM 399 >gi|260587325|ref|ZP_05853238.1| pyridine nucleotide-disulfide oxidoreductase/rhodanese domain protein [Blautia hansenii DSM 20583] gi|260542192|gb|EEX22761.1| pyridine nucleotide-disulfide oxidoreductase/rhodanese domain protein [Blautia hansenii DSM 20583] Length = 879 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 37/127 (29%), Gaps = 24/127 (18%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P G R E+C CK+C +E + + Sbjct: 709 CPNNCVKPDLNDLGIIGQRIPQVDMEKCRGCKIC---------RVEKNCPINVAKVVDGK 759 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRN 155 ID C +CG C CP +A FE T Y G RW ++ + Sbjct: 760 IVIDENSCNHCGRCIGKCPFNA------FE--DYTNGYRIY-------IGGRWGKKVAQG 804 Query: 156 IVTDSPY 162 + + Sbjct: 805 RYLEKVF 811 >gi|218779472|ref|YP_002430790.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfatibacillum alkenivorans AK-01] gi|218760856|gb|ACL03322.1| Putative fusion protein, heterodisulfide reductase (HdrA) /F420-non-reducing hydrogenase (MvhD) [Desulfatibacillum alkenivorans AK-01] Length = 814 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 8/62 (12%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E C AC C +CP AI+++ + ++ C CG C CP AI Sbjct: 597 EHCKACGKCAEVCPYNAISVDPKKKIPA--------VVNTAACAGCGTCGAECPFGAITM 648 Query: 121 GP 122 Sbjct: 649 NH 650 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 27/81 (33%), Gaps = 16/81 (19%) Query: 62 RCIACKLCEAICPA-------QAITIESGPRCHDGTRRTVRYDIDMIKCIY-----CGLC 109 C AC C +CP ++ Y I++ +C+ C C Sbjct: 257 ECTACGECAKVCPVVRPDEFNLGLSSRKAIYSPFPQAVPSSYVININECLGDNPSVCAKC 316 Query: 110 QEACPVDAIVEGPNFEFATET 130 +AC + I NF + E Sbjct: 317 VQACEKNCI----NFHMSDEQ 333 Score = 35.5 bits (80), Expect = 2.4, Method: Composition-based stats. Identities = 10/26 (38%), Positives = 13/26 (50%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGP 122 ++ C CG C E CP +AI P Sbjct: 593 EVITEHCKACGKCAEVCPYNAISVDP 618 >gi|209879035|ref|XP_002140958.1| pyruvate:NADP+ oxidoreductase protein [Cryptosporidium muris RN66] gi|209556564|gb|EEA06609.1| pyruvate:NADP+ oxidoreductase protein, putative [Cryptosporidium muris RN66] Length = 1945 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 28/89 (31%), Gaps = 17/89 (19%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQA-----------------ITIESGPRCHDGTRRT 93 A+ +C C C +CP A + I + + Sbjct: 724 IAISIPIVDMNKCTQCNYCSIVCPHAAIRPFLLEEVEFEEAPKSMHILRAKGGAEFSSYY 783 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 R + + C C LC ACP DA+ P Sbjct: 784 YRIQVAPLDCTGCELCVHACPDDALHMEP 812 >gi|159042272|ref|YP_001541524.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Caldivirga maquilingensis IC-167] gi|157921107|gb|ABW02534.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Caldivirga maquilingensis IC-167] Length = 89 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 26/75 (34%), Gaps = 10/75 (13%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G +R+ ++C C +C CP I ID C CG+ Sbjct: 22 GTWRVRKPIVNLDKCTKCGICWLYCPENVIDWLEDKTVA----------IDYDYCKGCGI 71 Query: 109 CQEACPVDAIVEGPN 123 C + CPV AI Sbjct: 72 CADVCPVKAITMIDE 86 >gi|119719455|ref|YP_919950.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Thermofilum pendens Hrk 5] gi|119524575|gb|ABL77947.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Thermofilum pendens Hrk 5] Length = 87 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 23/67 (34%), Gaps = 9/67 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +C C +C CP I I+ R ID C CG+C CP AI Sbjct: 30 DMSKCRLCGVCWLYCPDGVIEIDEDARLV---------KIDYDYCKGCGVCAAECPFKAI 80 Query: 119 VEGPNFE 125 E Sbjct: 81 SMVREHE 87 >gi|118377270|ref|XP_001021815.1| Dihydroorotate dehydrogenase family protein [Tetrahymena thermophila] gi|89303582|gb|EAS01570.1| Dihydroorotate dehydrogenase family protein [Tetrahymena thermophila SB210] Length = 1080 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 7/80 (8%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103 + ++ ++ C+ C C C +SG + I C Sbjct: 977 PIEKMSKEIIQVPEISKDSCLECGRCYVACS------DSGYQAIQFDGYNNVPRIIEEDC 1030 Query: 104 IYCGLCQEACPV-DAIVEGP 122 C +C +CPV +AI P Sbjct: 1031 TGCAICVASCPVENAIKMVP 1050 >gi|332993968|gb|AEF04023.1| electron transport complex protein RnfB [Alteromonas sp. SN2] Length = 189 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 30/96 (31%), Gaps = 10/96 (10%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E E + E+ CI C C CP AI G + + I Sbjct: 90 EPKPLDAAHGEEDTKKVAFIREDECIGCTKCIQACPVDAI---------LGAAKHMHTVI 140 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134 C C LC + CPVD I P + + Sbjct: 141 VEE-CTGCDLCVDPCPVDCIDMVPVTPTTATWKWDF 175 >gi|330966554|gb|EGH66814.1| iron-sulfur cluster-binding protein [Pseudomonas syringae pv. actinidiae str. M302091] Length = 310 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 10/74 (13%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 RGE + E CI C C CP AI + + + + + +C C Sbjct: 95 RGEAPAQVAFIREAECIGCTKCIQACPVDAILGAAK----------LMHTVIIDECTGCD 144 Query: 108 LCQEACPVDAIVEG 121 LC CPVD I Sbjct: 145 LCVAPCPVDCIEMH 158 >gi|327398331|ref|YP_004339200.1| NIL domain-containing protein [Hippea maritima DSM 10411] gi|327180960|gb|AEA33141.1| NIL domain-containing protein [Hippea maritima DSM 10411] Length = 138 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 8/65 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 EE+C C C A+CP QA+TI R+T+R D+ +CI CG C + CPV A+ Sbjct: 81 NEEKCYHCGFCVAVCPTQALTIND--------RKTMRVDLYKDRCIACGYCVKVCPVKAM 132 Query: 119 VEGPN 123 Sbjct: 133 NLENE 137 >gi|237653485|ref|YP_002889799.1| formate dehydrogenase, subunit alpha [Thauera sp. MZ1T] gi|237624732|gb|ACR01422.1| formate dehydrogenase, alpha subunit [Thauera sp. MZ1T] Length = 949 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 33/91 (36%), Gaps = 11/91 (12%) Query: 39 EKGSTSPRFRGEHALRRY------PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 E RG A + + CI C LC C + E H G R Sbjct: 151 EHMRLPAADRGPAAQQPDRTHPAIHVNLDACITCGLCVRACR-EVQVNEVIGLAHRGARA 209 Query: 93 TVRYDIDM----IKCIYCGLCQEACPVDAIV 119 + +D D C+ CG C +ACP A++ Sbjct: 210 KIVFDFDDALGDSSCVACGECVQACPTGALM 240 >gi|225570977|ref|ZP_03780000.1| hypothetical protein CLOHYLEM_07081 [Clostridium hylemonae DSM 15053] gi|225160439|gb|EEG73058.1| hypothetical protein CLOHYLEM_07081 [Clostridium hylemonae DSM 15053] Length = 1178 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 33/110 (30%), Gaps = 19/110 (17%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQ------------AITIESGPRCHDGTRRTVR 95 RG E CI C C +CP A E ++ Sbjct: 679 RGIAVDIPVWKE-ENCIQCNRCAYVCPHAVIRPVALTEDELAKAPEGTKAIDMVGMPGMK 737 Query: 96 YDIDMI--KCIYCGLCQEACP----VDAIVEGPNFEFATETRQELYYDKE 139 + I + C CG C CP A+V T +++ + KE Sbjct: 738 FAITVSGYDCTGCGSCANVCPGKKGEKALVMENMEANVTVSQERFDFGKE 787 >gi|210615651|ref|ZP_03290697.1| hypothetical protein CLONEX_02915 [Clostridium nexile DSM 1787] gi|210150194|gb|EEA81203.1| hypothetical protein CLONEX_02915 [Clostridium nexile DSM 1787] Length = 263 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 11/84 (13%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P+E+ + + CI CK+C+ +CP+ AI +E Sbjct: 191 VPYEQKHLVQCSSKDKGKDVLSVCKVGCIGCKMCQKVCPSDAIVVEDNIAH--------- 241 Query: 96 YDIDMIKCIYCGLCQEACPVDAIV 119 ID KC CGLC E CP I+ Sbjct: 242 --IDPEKCTNCGLCAEKCPKKIIM 263 Score = 37.4 bits (85), Expect = 0.60, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 5/70 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCH-----DGTRRTVRYDIDMIKCIYCGLCQEAC 113 ++ C AC C A CP + + + H + + + CI C +CQ+ C Sbjct: 169 DKDACKACGKCVAACPKHLVELVPYEQKHLVQCSSKDKGKDVLSVCKVGCIGCKMCQKVC 228 Query: 114 PVDAIVEGPN 123 P DAIV N Sbjct: 229 PSDAIVVEDN 238 >gi|152981481|ref|YP_001352407.1| electron transport complex protein RnfB [Janthinobacterium sp. Marseille] gi|151281558|gb|ABR89968.1| electron transport complex protein RnfB [Janthinobacterium sp. Marseille] Length = 233 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 29/97 (29%), Gaps = 18/97 (18%) Query: 24 LRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG 83 L + P + R R + E CI C LC CP AI + Sbjct: 61 LAHLLGKPV---IPINPVNGHERPRPVAVI-----DESLCIGCTLCIQACPVDAIVGAAK 112 Query: 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + I C C LC CPVD I Sbjct: 113 Q----------MHTIVNDLCTGCDLCVAPCPVDCIAM 139 >gi|157370480|ref|YP_001478469.1| electron transport complex protein RnfB [Serratia proteamaculans 568] gi|166991045|sp|A8GE01|RNFB_SERP5 RecName: Full=Electron transport complex protein rnfB gi|157322244|gb|ABV41341.1| electron transport complex, RnfABCDGE type, B subunit [Serratia proteamaculans 568] Length = 190 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 24/84 (28%), Gaps = 10/84 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E E + E CI C C CP AI + + + Sbjct: 91 EPQPLGSEAAAEPVRQVAYIDEANCIGCTKCIQACPVDAIVGAT----------RAMHTV 140 Query: 99 DMIKCIYCGLCQEACPVDAIVEGP 122 C C LC CP D I P Sbjct: 141 ITDLCTGCDLCVAPCPTDCIEMRP 164 >gi|160881922|ref|YP_001560890.1| NADH dehydrogenase (quinone) [Clostridium phytofermentans ISDg] gi|160430588|gb|ABX44151.1| NADH dehydrogenase (quinone) [Clostridium phytofermentans ISDg] Length = 595 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 34/96 (35%), Gaps = 15/96 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 LRY F+ + + +K +L Y + C C LC CP AI Sbjct: 512 TLRY-FRDEYVAHVVDKKCPAGVC----KSLLSYTIDADMCKGCTLCARTCPNNAIEG-- 564 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + + I KCI CG C E C AI Sbjct: 565 --------KVREPHVIIQDKCIKCGACMEKCKFGAI 592 >gi|56460895|ref|YP_156176.1| electron transport complex protein RnfB [Idiomarina loihiensis L2TR] gi|56179905|gb|AAV82627.1| Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Idiomarina loihiensis L2TR] Length = 193 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 34/106 (32%), Gaps = 10/106 (9%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E E + E+ CI C C CP AI + + + Sbjct: 90 EAKPLDDAHGEEDVKKVAVIREDECIGCTKCIQACPVDAILGAAKQ----------MHTV 139 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNN 144 +C C LC E CPVD I + +L KE + N Sbjct: 140 IEHECTGCDLCVEPCPVDCIDMVKVKARPETWQWDLDTVKENIKAN 185 >gi|119776748|ref|YP_929488.1| iron-sulfur cluster-binding protein [Shewanella amazonensis SB2B] gi|119769248|gb|ABM01819.1| iron-sulfur cluster-binding protein [Shewanella amazonensis SB2B] Length = 580 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 30/93 (32%), Gaps = 9/93 (9%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 G + + C C C AICP A+ C+ CG Sbjct: 435 MGNIPFGKVTVATDNCTLCMSCVAICPTAALKDGGDEPKLL---------FTEQNCVQCG 485 Query: 108 LCQEACPVDAIVEGPNFEFATETRQELYYDKER 140 LC+ ACP I P F +RQ KE Sbjct: 486 LCEAACPEKVISLVPQVNFDAPSRQAARVLKEE 518 Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 18/53 (33%), Gaps = 11/53 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C CPA AI +ID C G C ACP AI Sbjct: 222 CNRCLNFCPADAIQSVEKK-----------IEIDPYLCHGAGSCTNACPTGAI 263 >gi|329902902|ref|ZP_08273300.1| tungsten-containing formate dehydrogenase alpha subunit [Oxalobacteraceae bacterium IMCC9480] gi|327548566|gb|EGF33227.1| tungsten-containing formate dehydrogenase alpha subunit [Oxalobacteraceae bacterium IMCC9480] Length = 938 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 5/89 (5%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM----IKC 103 R +H+ + CI C C C + + G+ + +D+ C Sbjct: 141 RPDHSHPAMTVNLDACIQCTRCVRACRDE-QVNDVIGLAFRGSHAEIVFDMGDPMGNSTC 199 Query: 104 IYCGLCQEACPVDAIVEGPNFEFATETRQ 132 + CG C +ACP A++ + A +Q Sbjct: 200 VACGECVQACPTGALMPARDAALAVPDKQ 228 >gi|316964779|gb|EFV49731.1| putative ABC transporter, ATP-binding protein [Trichinella spiralis] Length = 575 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 32/95 (33%), Gaps = 4/95 (4%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 K R +RC K C +C + G C + T + I Sbjct: 3 KLPKPGHTEQSKITRIAIVNNDRCKP-KNCGQVCKKSCPVVRMGKLCIEVTPSSKIAFIS 61 Query: 100 MIKCIYCGLCQEACPVDAIVEGP---NFEFATETR 131 CI CG+C + CP DAI N E T R Sbjct: 62 ESLCIGCGICVKKCPYDAISIINLPSNLEKHTTHR 96 >gi|304315005|ref|YP_003850152.1| conserved hypothetical protein containing a ferredoxin domain [Methanothermobacter marburgensis str. Marburg] gi|302588464|gb|ADL58839.1| conserved hypothetical protein containing a ferredoxin domain [Methanothermobacter marburgensis str. Marburg] Length = 128 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 30/71 (42%), Gaps = 10/71 (14%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 A+R E+C+ C C ++CP AI IE ID KCI C C Sbjct: 66 HPAMRVVKKDREKCVDCGACVSLCPVSAICIEDDWEI----------RIDDQKCIGCSFC 115 Query: 110 QEACPVDAIVE 120 +CP AI+ Sbjct: 116 VNSCPTGAIML 126 Score = 37.4 bits (85), Expect = 0.74, Method: Composition-based stats. Identities = 12/37 (32%), Positives = 15/37 (40%) Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 D KC+ CG C CPV AI ++E Sbjct: 66 HPAMRVVKKDREKCVDCGACVSLCPVSAICIEDDWEI 102 >gi|293396260|ref|ZP_06640539.1| electron transport complex protein RnfC [Serratia odorifera DSM 4582] gi|291421240|gb|EFE94490.1| electron transport complex protein RnfC [Serratia odorifera DSM 4582] Length = 558 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 1/58 (1%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 E+ CI C LC CPA + + G + ++ CI CG C CP Sbjct: 371 QEPEQSCIRCGLCVDACPAG-LLPQQLYWFSRGQEHDKARNHNLFDCIECGACAYVCP 427 >gi|253579944|ref|ZP_04857212.1| NADH dehydrogenase I subunit F [Ruminococcus sp. 5_1_39B_FAA] gi|251848943|gb|EES76905.1| NADH dehydrogenase I subunit F [Ruminococcus sp. 5_1_39BFAA] Length = 625 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 26/68 (38%), Gaps = 10/68 (14%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 A+R Y E+C C C CP AIT ID KCI CG C Sbjct: 565 KAMRSYVIDPEKCKGCTKCARNCPVGAITGNKKEPHS----------IDTSKCIKCGTCL 614 Query: 111 EACPVDAI 118 E C AI Sbjct: 615 ENCVFGAI 622 Score = 40.1 bits (92), Expect = 0.10, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 14/40 (35%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 I + Y ID KC C C CPV AI Sbjct: 553 HIVDKKCAAHVCKAMRSYVIDPEKCKGCTKCARNCPVGAI 592 >gi|150402891|ref|YP_001330185.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanococcus maripaludis C7] gi|150033921|gb|ABR66034.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus maripaludis C7] Length = 395 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 1/75 (1%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++C C C CP AI + + +++ + CI CG C CP A+ Sbjct: 266 DKCAYCGPCALKCPTGAIKVVNPKGLELPSKKKTEKANEFAMCIRCGACAMKCPTGALKM 325 Query: 121 GP-NFEFATETRQEL 134 G E TR E Sbjct: 326 GKVVHEGKEYTRVEF 340 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++CI C +C CP AI +G + + ++ +CI C C EACP I Sbjct: 156 DTDKCIYCTVCSQTCPWNAIF-VAGKMPQKRQKTIKSFTVNEEECIGCEKCVEACPGSMI 214 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 3/66 (4%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 N CI C C CP A+ + + + R + C CG C + CP Sbjct: 303 NEFAMCIRCGACAMKCPTGALKM---GKVVHEGKEYTRVEFSPALCNECGECVDVCPQKT 359 Query: 118 IVEGPN 123 + + Sbjct: 360 LELTGD 365 Score = 38.9 bits (89), Expect = 0.24, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK-CIYCGLCQEACP 114 +P + C+ C+ C ICPA+ I++ + I + K C+ CG+C CP Sbjct: 84 FPYSKGHCVLCEKCVDICPAEIISLPGKAEKPKKEIIIPQEPIAVTKDCVACGVCVPECP 143 Query: 115 VDAIVEGPN 123 VDAI Sbjct: 144 VDAISIKDI 152 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 24/56 (42%), Gaps = 1/56 (1%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C AC LC CP +AI++E + KC YCG C CP AI Sbjct: 229 CPACGLCVESCPVEAISLEVEYASAKPVTDEGLVWL-EDKCAYCGPCALKCPTGAI 283 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 12/59 (20%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C+AC +C CP AI+I+ ID KCIYC +C + CP +AI Sbjct: 130 KDCVACGVCVPECPVDAISIKDIAV------------IDTDKCIYCTVCSQTCPWNAIF 176 Score = 33.9 bits (76), Expect = 7.9, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 17/78 (21%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDG-----------------TRRTVRYDIDMIK 102 + CI C C CP A+ ++ G +G + R+ Sbjct: 31 FKTCIQCFSCANACPTGALVVKDGKLVFNGSKCDLDGACAKACPQGIKKVDDRFPYSKGH 90 Query: 103 CIYCGLCQEACPVDAIVE 120 C+ C C + CP + I Sbjct: 91 CVLCEKCVDICPAEIISL 108 >gi|150019924|ref|YP_001305278.1| cobyrinic acid a,c-diamide synthase [Thermosipho melanesiensis BI429] gi|149792445|gb|ABR29893.1| Cobyrinic acid a,c-diamide synthase [Thermosipho melanesiensis BI429] Length = 282 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 11/64 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++CI C C C AI++ + C CG C CPV+AI Sbjct: 65 DNDKCIKCGECSRACQFGAISVFPNSTV-----------VFKNLCHGCGACTMVCPVNAI 113 Query: 119 VEGP 122 E P Sbjct: 114 KEVP 117 >gi|160879121|ref|YP_001558089.1| nitroreductase [Clostridium phytofermentans ISDg] gi|160427787|gb|ABX41350.1| nitroreductase [Clostridium phytofermentans ISDg] Length = 273 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 27/107 (25%), Positives = 39/107 (36%), Gaps = 14/107 (13%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 +E+CIAC LC CPA+ IT + CI CG C CP Sbjct: 1 MMIVNKEKCIACGLCINDCPARCITWKDNKAFVVNKI-----------CIECGHCIAICP 49 Query: 115 VDAI--VEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 A+ E E + + + E LL N ++ I + + Sbjct: 50 KFAVSTEEDKMKEVIPYKEETFHIEPENLL-NFIKFRRSIRQFKDQE 95 >gi|20093899|ref|NP_613746.1| ferredoxin [Methanopyrus kandleri AV19] gi|19886840|gb|AAM01676.1| Ferredoxin [Methanopyrus kandleri AV19] Length = 379 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 10/91 (10%) Query: 36 YPFEKGSTSPR-FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 P E R + + + CI C++C +CP AI IE R Sbjct: 214 CPTEALKRPDHRPRPKCTDEVFYIQPDMCIGCRICYDVCPVDAIRIEEITRMP------- 266 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 I C+ CGLC +ACP A+ P E Sbjct: 267 --VIMPDLCVRCGLCADACPTSAVDRVPTEE 295 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 2/62 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ERC+ C C A CP +A+ T + I CI C +C + CPVDAI Sbjct: 200 DPERCLGCYNCVAYCPTEALKRPDHRPRPKCT--DEVFYIQPDMCIGCRICYDVCPVDAI 257 Query: 119 VE 120 Sbjct: 258 RI 259 Score = 38.2 bits (87), Expect = 0.40, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 3/82 (3%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 P + + + C C C +CP ++T+E +R ++ Sbjct: 118 EVCPTGVMREIIEEHRIDLDACHGCLECVKVCPYGSVTVELE---VPQLKRRSNPRLNRE 174 Query: 102 KCIYCGLCQEACPVDAIVEGPN 123 C+ C C E CP A P+ Sbjct: 175 LCVECNRCHEVCPTGAADNVPD 196 Score = 38.2 bits (87), Expect = 0.41, Method: Composition-based stats. Identities = 14/83 (16%), Positives = 22/83 (26%), Gaps = 12/83 (14%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P+ + E C+ C C +CP A Sbjct: 149 CPYGSVTVELEVPQLKRRSNPRLNRELCVECNRCHEVCPTGAADNVPDGDPD-------- 200 Query: 96 YDIDMIKCIYCGLCQEACPVDAI 118 +C+ C C CP +A+ Sbjct: 201 ----PERCLGCYNCVAYCPTEAL 219 Score = 34.7 bits (78), Expect = 4.0, Method: Composition-based stats. Identities = 10/19 (52%), Positives = 11/19 (57%) Query: 100 MIKCIYCGLCQEACPVDAI 118 +C CGLC E CP AI Sbjct: 26 PDECAGCGLCAEVCPTGAI 44 Score = 33.5 bits (75), Expect = 8.7, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 12/70 (17%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 R R + C C LC +CP AI ++ R +C+ Sbjct: 11 DRLRNVTINIVEVERPDECAGCGLCAEVCPTGAIEVDERVRLD------------EDRCV 58 Query: 105 YCGLCQEACP 114 C C +ACP Sbjct: 59 ACSFCVQACP 68 >gi|332140732|ref|YP_004426470.1| electron transport complex protein RnfC [Alteromonas macleodii str. 'Deep ecotype'] gi|327550754|gb|AEA97472.1| electron transport complex protein RnfC [Alteromonas macleodii str. 'Deep ecotype'] Length = 852 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 32/95 (33%), Gaps = 2/95 (2%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 N E CI C C CPA + + + D+ CI CG C CP Sbjct: 376 DDNAERPCIRCSACADACPASLLPQQMFWHAKAKE-YDKAEEYDLFDCIECGACAYVCP- 433 Query: 116 DAIVEGPNFEFATETRQELYYDKERLLNNGDRWES 150 I + A + +K + R+E+ Sbjct: 434 SEIPLVHYYRQAKAEIRLQRDEKNKAEKAKQRFEA 468 >gi|313893000|ref|ZP_07826577.1| pyruvate synthase [Veillonella sp. oral taxon 158 str. F0412] gi|313442353|gb|EFR60768.1| pyruvate synthase [Veillonella sp. oral taxon 158 str. F0412] Length = 1178 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 29/129 (22%), Positives = 42/129 (32%), Gaps = 29/129 (22%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQ------------AITIESGPRCHDGTRRTVRYDI 98 AL E CI C C +CP A E + +++ I Sbjct: 682 PALFVPKWLPENCIQCNQCSFVCPHATIRPILATEAEVAAAPEHFDTIPAMGAKDLQFRI 741 Query: 99 --DMIKCIYCGLCQEACPVD---AIVEG---PNFEFATETR-------QELYYDKERLLN 143 + C+ CG C + CP AIV E A +E +KE L Sbjct: 742 AVSPLDCLGCGNCVDICPSPKGKAIVMTSIDTEIEQAEAWNYGVNLPVKENPMNKETL-- 799 Query: 144 NGDRWESEI 152 G ++E + Sbjct: 800 KGSQFEQPL 808 >gi|312138771|ref|YP_004006107.1| ferredoxin domain oxidoreductase [Rhodococcus equi 103S] gi|311888110|emb|CBH47422.1| putative ferredoxin domain oxidoreductase [Rhodococcus equi 103S] Length = 470 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 26/76 (34%), Gaps = 8/76 (10%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV-- 119 C C +CP I G G T ID CI C C +ACP A+ Sbjct: 8 HCCKDASCVRVCPQNCIHPAPGED---GFASTETLYIDPDSCIDCTACVDACPASAVKSE 64 Query: 120 --EGP-NFEFATETRQ 132 P +A R+ Sbjct: 65 HALTPAELPYAARNRE 80 >gi|291617338|ref|YP_003520080.1| RnfB [Pantoea ananatis LMG 20103] gi|291152368|gb|ADD76952.1| RnfB [Pantoea ananatis LMG 20103] gi|327393783|dbj|BAK11205.1| electron transport complex protein RnfB [Pantoea ananatis AJ13355] Length = 192 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 24/84 (28%), Gaps = 10/84 (11%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 E CI C C CP AI + + + C C LC Sbjct: 105 PVRTVAWIDEANCIGCTKCIQACPVDAIVGAT----------RAMHTVLSDVCTGCDLCV 154 Query: 111 EACPVDAIVEGPNFEFATETRQEL 134 CP D I P + +L Sbjct: 155 APCPTDCIEMRPVATTTANWKWDL 178 >gi|253989599|ref|YP_003040955.1| electron transport complex protein RnfB [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781049|emb|CAQ84211.1| 4Fe-4S ferredoxin, iron-sulphur binding [Photorhabdus asymbiotica] Length = 205 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 27/85 (31%), Gaps = 10/85 (11%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 + EE CI C C CP AI + + + C C LC Sbjct: 104 NPVRKVAFIDEENCIGCTKCIQACPVDAIVGAT----------RAMHTVVEDLCTGCDLC 153 Query: 110 QEACPVDAIVEGPNFEFATETRQEL 134 CP D I P + + +L Sbjct: 154 VAPCPTDCIAMIPVATTTSNWKWDL 178 >gi|251779138|ref|ZP_04822058.1| pyridine nucleotide-disulphide oxidoreductase family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243083453|gb|EES49343.1| pyridine nucleotide-disulphide oxidoreductase family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 896 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 40/117 (34%), Gaps = 12/117 (10%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 K T FE + H + C C C A I + +D Sbjct: 223 RKITREEAFEIIKRAEENGLMHQIPNADGPGNTHAICNCCG--CSCYATRIAGMFQNNDM 280 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVE-------GPNFEFATETRQELYYDKE 139 R +D KC+ CG C + CPV+A+ P E + R++ Y+ E Sbjct: 281 VRSNYVSKVDKDKCVACGECVQVCPVNALKLGQKLCTKTPIVE---KKREDFAYNTE 334 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 3/86 (3%) Query: 78 ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 T E + + +D +CI CG C C DAI ++ + T +EL Sbjct: 812 FTEEQMKKETERCLGCGATTVDQDQCIGCGACTTRCKFDAITLYRKYDAQSVTIKEL--- 868 Query: 138 KERLLNNGDRWESEIVRNIVTDSPYR 163 K +++ N + + I + S R Sbjct: 869 KPKVIKNIIKRKFVIKARKIKKSFKR 894 >gi|238760426|ref|ZP_04621565.1| Electron transport complex protein rnfC [Yersinia aldovae ATCC 35236] gi|238701378|gb|EEP93956.1| Electron transport complex protein rnfC [Yersinia aldovae ATCC 35236] Length = 536 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 3/103 (2%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C LC CPA + + G + ++ CI CG C CP I Sbjct: 351 QSCIRCGLCVDACPAG-LLPQQLYWFSRGDEHEKARNHNLFDCIECGACAYVCP-SNIPL 408 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + + L + R R+E++ R + + R Sbjct: 409 VQYYRQEKAEIRALDQESARAAEAKARFEAKQAR-LAREKLAR 450 >gi|297619219|ref|YP_003707324.1| Cobyrinic acid ac-diamide synthase [Methanococcus voltae A3] gi|297378196|gb|ADI36351.1| Cobyrinic acid ac-diamide synthase [Methanococcus voltae A3] Length = 293 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 11/62 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C C C C A+ I + C CGLC E CPV+AI Sbjct: 66 DENLCTKCGDCAKYCNFNALAITKNSAL-----------VFEKLCHDCGLCYEVCPVNAI 114 Query: 119 VE 120 E Sbjct: 115 SE 116 Score = 34.3 bits (77), Expect = 5.2, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 13/37 (35%) Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 ID C CG C + C +A+ N E Sbjct: 61 KVPKIDENLCTKCGDCAKYCNFNALAITKNSALVFEK 97 >gi|871456|emb|CAA61208.1| putative alpha subunit of formate dehydrogenease [Methanothermobacter thermautotrophicus] Length = 887 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 4/63 (6%) Query: 59 GEERCIACKLCEAICP---AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 ++CI C +C +C A+A+ R DI C+ CG C EACPV Sbjct: 147 NHDKCILCGICVRVCRGLGAEAVDFAYRGHDTRIATFMDR-DILDSSCVSCGECVEACPV 205 Query: 116 DAI 118 A+ Sbjct: 206 GAL 208 >gi|466366|gb|AAA87057.1| potential NAD-reducing hydrogenase subunit [Desulfovibrio fructosovorans] Length = 585 Score = 48.2 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 6/79 (7%) Query: 59 GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115 ++CI C+ CE +C Q + SG +++++ C CG C CP Sbjct: 149 DMDKCIMCRRCETMCNTVQTCGVLSGVNRGFTAVVAPAFEMNLADTVCTNCGQCVAVCPT 208 Query: 116 DAIVEGPNFEFATETRQEL 134 A+V E+ E + L Sbjct: 209 GALV---EHEYIWEVVEAL 224 >gi|319942137|ref|ZP_08016455.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Sutterella wadsworthensis 3_1_45B] gi|319804347|gb|EFW01231.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Sutterella wadsworthensis 3_1_45B] Length = 552 Score = 47.8 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 18/63 (28%), Gaps = 3/63 (4%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 RC++C C R+ + C CG+C CP AI Sbjct: 491 RRCMSCGNCFEC---DNCYGVCPDNAVIKLGPGKRFRFNYDYCKGCGICANECPCGAIDM 547 Query: 121 GPN 123 Sbjct: 548 VRE 550 >gi|302344053|ref|YP_003808582.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfarculus baarsii DSM 2075] gi|301640666|gb|ADK85988.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfarculus baarsii DSM 2075] Length = 384 Score = 47.8 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 26/83 (31%), Positives = 32/83 (38%), Gaps = 5/83 (6%) Query: 61 ERCIACKLCEAICPAQAIT-----IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 ERCIAC C CP AI + P + + D KCI CG C CP Sbjct: 193 ERCIACGQCVRRCPGLAIRLVKRGPDMPPAPAGSEKPELCAVKDAEKCIGCGDCILTCPQ 252 Query: 116 DAIVEGPNFEFATETRQELYYDK 138 AI + + R+ Y K Sbjct: 253 SAIEIAWDAQIPQFMRRMAAYTK 275 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 10/26 (38%), Positives = 11/26 (42%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGP 122 I +CI CG C CP AI Sbjct: 189 TIRAERCIACGQCVRRCPGLAIRLVK 214 >gi|258516625|ref|YP_003192847.1| NADH dehydrogenase (quinone) [Desulfotomaculum acetoxidans DSM 771] gi|257780330|gb|ACV64224.1| NADH dehydrogenase (quinone) [Desulfotomaculum acetoxidans DSM 771] Length = 619 Score = 47.8 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 10/68 (14%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 L + +E+C C C CPA AIT E ID+ KCI CG C Sbjct: 560 ELLTFVIDKEKCNGCGKCARSCPAGAITGEKKMPHE----------IDITKCIKCGACLA 609 Query: 112 ACPVDAIV 119 C DAI Sbjct: 610 GCKFDAIY 617 Score = 37.0 bits (84), Expect = 0.86, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 15/40 (37%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 I + + ID KC CG C +CP AI Sbjct: 547 HINDKRCPAGACTELLTFVIDKEKCNGCGKCARSCPAGAI 586 >gi|163736166|ref|ZP_02143585.1| iron-sulfur cluster-binding protein [Phaeobacter gallaeciensis BS107] gi|161390036|gb|EDQ14386.1| iron-sulfur cluster-binding protein [Phaeobacter gallaeciensis BS107] Length = 415 Score = 47.8 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 9/66 (13%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C+ C +CP A+ G D C+ CGLC C +AI Sbjct: 233 DCTLCQACTWVCPTNAL---------IGAENGGGLDFVEADCMQCGLCVSVCRQNAIRLV 283 Query: 122 PNFEFA 127 P E + Sbjct: 284 PRLELS 289 >gi|163794187|ref|ZP_02188159.1| formate dehydrogenase alpha subunit [alpha proteobacterium BAL199] gi|159180355|gb|EDP64876.1| formate dehydrogenase alpha subunit [alpha proteobacterium BAL199] Length = 929 Score = 47.8 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 5/65 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114 + CI C LC C + + + G + + +D + C+ CG C +ACP Sbjct: 149 NLDACIQCNLCVRACR-EVQVNDVIGLAYRGHQAKIVFDFDDAMGASTCVGCGECVQACP 207 Query: 115 VDAIV 119 A++ Sbjct: 208 TGALM 212 Score = 34.7 bits (78), Expect = 3.8, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 6/69 (8%) Query: 47 FRGEHALR----RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 +RG A G C+ C C CP A+ ++ G + Sbjct: 176 YRGHQAKIVFDFDDAMGASTCVGCGECVQACPTGALMPKTALD-EFGLFKGKADRQVESV 234 Query: 103 CIYCGL-CQ 110 C YCG+ CQ Sbjct: 235 CPYCGVGCQ 243 >gi|119094136|gb|ABL60966.1| iron-sulfur cluster-binding protein [uncultured marine bacterium HF10_19P19] Length = 669 Score = 47.8 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 27/82 (32%), Gaps = 10/82 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++C C C CPA A+ C+ CG+C CP I Sbjct: 523 DTDKCTICLSCVGACPAGALQDNPDAPQLL---------FREDACLQCGICVATCPEKVI 573 Query: 119 VEGPNFEFATETRQ-ELYYDKE 139 P F + + EL + E Sbjct: 574 TLVPQFNLSDKAMATELVIEDE 595 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 19/54 (35%), Gaps = 11/54 (20%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 C C +CPA AI + ID C CG+C CP A Sbjct: 288 TGCSRCLDVCPAGAIVVAGD-----------HVAIDPAVCGGCGMCGAVCPSGA 330 Score = 35.1 bits (79), Expect = 3.0, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 21/49 (42%) Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 ++A E+ R DID KC C C ACP A+ + P+ Sbjct: 499 SKANGAETDVIPLPEGAPYGRVDIDTDKCTICLSCVGACPAGALQDNPD 547 >gi|150399527|ref|YP_001323294.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanococcus vannielii SB] gi|150012230|gb|ABR54682.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus vannielii SB] Length = 253 Score = 47.8 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 11/87 (12%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 +E R L+ + + CI C +CE CP AIT+E R D Sbjct: 110 YELNEVPVAHRK-IRLKEHCIDMDSCIKCGICEKFCPTDAITVE----------RKNSID 158 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNF 124 I++ C+ C C++ CP +I Sbjct: 159 INLNLCMGCTACEKVCPKKSIKVENEM 185 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 33/90 (36%), Gaps = 11/90 (12%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + + E+C+ C +C ICP AIT E+G Sbjct: 174 CPKKSIKVENEMGKIDFKKSIFLDNEKCVDCMVCSEICPVSAITYENGKMVVSKPV---- 229 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CI+CG C++ CPV AI E Sbjct: 230 -------CIFCGKCEKNCPVTAISIENVME 252 Score = 40.5 bits (93), Expect = 0.081, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 37/96 (38%), Gaps = 16/96 (16%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR------ 91 FE+ S + E C+ C++C CP AI + G G Sbjct: 55 FEECPVSA-IKKPSVKNPAEIIPENCVKCEICAKTCPVSAINVLEGKAELKGDTVIYELN 113 Query: 92 ---------RTVRYDIDMIKCIYCGLCQEACPVDAI 118 R + IDM CI CG+C++ CP DAI Sbjct: 114 EVPVAHRKIRLKEHCIDMDSCIKCGICEKFCPTDAI 149 Score = 38.5 bits (88), Expect = 0.34, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 9/69 (13%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + +CI C LC CP AI S +I C+ C +C Sbjct: 36 PVEKNLYVESSKCIRCNLCFEECPVSAIKKPSVKNPA---------EIIPENCVKCEICA 86 Query: 111 EACPVDAIV 119 + CPV AI Sbjct: 87 KTCPVSAIN 95 >gi|20806954|ref|NP_622125.1| pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase, alpha subunit [Thermoanaerobacter tengcongensis MB4] gi|20515433|gb|AAM23729.1| Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Thermoanaerobacter tengcongensis MB4] Length = 1173 Score = 47.8 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 40/117 (34%), Gaps = 28/117 (23%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTRRTV 94 G+ + RG + CI C C +CP AI T E +G + Sbjct: 667 PGTAAYEKRGIAVDVPEWQ-IDNCIQCNQCAFVCPHAAIRPFLLTEEEVKNAPEGFKVKK 725 Query: 95 -----------RYDIDMIKCIYCGLCQEACP--VDAIVEGP---------NFEFATE 129 R + ++ C CG+C CP A+V P N+E+A Sbjct: 726 AIGKGFEGLYYRIQVSVLDCTGCGVCVNECPAKEKALVMKPLETQLHEAENWEYAMT 782 >gi|125972951|ref|YP_001036861.1| hydrogenase, Fe-only [Clostridium thermocellum ATCC 27405] gi|256005707|ref|ZP_05430663.1| hydrogenase, Fe-only [Clostridium thermocellum DSM 2360] gi|125713176|gb|ABN51668.1| hydrogenase, Fe-only [Clostridium thermocellum ATCC 27405] gi|255990338|gb|EEU00464.1| hydrogenase, Fe-only [Clostridium thermocellum DSM 2360] gi|316940813|gb|ADU74847.1| hydrogenase, Fe-only [Clostridium thermocellum DSM 1313] Length = 566 Score = 47.8 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 3/72 (4%) Query: 55 RYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQE 111 +CI C C +C Q + + +D I C+ CG C Sbjct: 140 CITRDRSKCILCGDCVRVCNEVQNVGAIDFAYRGSKMTISTVFDKPIFESNCVGCGQCAL 199 Query: 112 ACPVDAIVEGPN 123 ACP AIV + Sbjct: 200 ACPTGAIVVKDD 211 >gi|320101377|ref|YP_004176969.1| pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta [Desulfurococcus mucosus DSM 2162] gi|319753729|gb|ADV65487.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Desulfurococcus mucosus DSM 2162] Length = 93 Score = 47.8 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 10/65 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + RC C CE CP I +E ID C CG+C + CPV+AI Sbjct: 37 DQGRCTRCYQCEIYCPVNVIRVEPETGAV----------IDYEYCKGCGVCADVCPVNAI 86 Query: 119 VEGPN 123 Sbjct: 87 SLVEE 91 >gi|325676533|ref|ZP_08156211.1| ferredoxin--NADP(+) reductase [Rhodococcus equi ATCC 33707] gi|325552711|gb|EGD22395.1| ferredoxin--NADP(+) reductase [Rhodococcus equi ATCC 33707] Length = 470 Score = 47.8 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 26/76 (34%), Gaps = 8/76 (10%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV-- 119 C C +CP I G G T ID CI C C +ACP A+ Sbjct: 8 HCCKDASCVRVCPQNCIHPAPGED---GFASTETLYIDPDSCIDCTACVDACPASAVKSE 64 Query: 120 --EGP-NFEFATETRQ 132 P +A R+ Sbjct: 65 HALTPAELPYAARNRE 80 >gi|300088087|ref|YP_003758609.1| glutamate synthase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527820|gb|ADJ26288.1| Glutamate synthase (NADPH) [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 501 Score = 47.8 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 12/92 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+CI C++C C + ++ KCI C C CP +A+ Sbjct: 14 DPEKCIKCQVCVNQCSFDSHYYDADDDE---------IRCRDGKCIGCHRCVLFCPTNAL 64 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWES 150 V N E R+ + E + + + E Sbjct: 65 VVRRN---PLEYRENYGWKPEYIEDIQKQAEQ 93 >gi|325678607|ref|ZP_08158217.1| pyruvate synthase [Ruminococcus albus 8] gi|324109657|gb|EGC03863.1| pyruvate synthase [Ruminococcus albus 8] Length = 1192 Score = 47.8 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 23/83 (27%), Gaps = 17/83 (20%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQ----------------AITIESGPRCHDGTR 91 RG NG E CI C C +CP A+ E Sbjct: 688 RGIAVDVPAWNG-ENCIQCNFCSYVCPHAVIRPVIMTDDELAKAPALAKEKAVPVTGMAG 746 Query: 92 RTVRYDIDMIKCIYCGLCQEACP 114 + + C CG C CP Sbjct: 747 YNFVMTMSALDCTGCGSCVNVCP 769 >gi|225018512|ref|ZP_03707704.1| hypothetical protein CLOSTMETH_02459 [Clostridium methylpentosum DSM 5476] gi|224948713|gb|EEG29922.1| hypothetical protein CLOSTMETH_02459 [Clostridium methylpentosum DSM 5476] Length = 203 Score = 47.8 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 30/72 (41%), Gaps = 12/72 (16%) Query: 47 FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 F G L + CI C C ICP Q I S Y I C++C Sbjct: 139 FGGAELLNVGFQITDSCIECGRCRRICPQQCIEPGS------------PYVIRQQNCLHC 186 Query: 107 GLCQEACPVDAI 118 GLCQE CPV AI Sbjct: 187 GLCQEQCPVQAI 198 >gi|225023979|ref|ZP_03713171.1| hypothetical protein EIKCOROL_00846 [Eikenella corrodens ATCC 23834] gi|224943004|gb|EEG24213.1| hypothetical protein EIKCOROL_00846 [Eikenella corrodens ATCC 23834] Length = 291 Score = 47.8 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 10/66 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C C CP AI S + + + +C CGLC CPVD Sbjct: 76 YIDETACIGCTACIKACPVDAILGASK----------LMHTVLADECTGCGLCLPPCPVD 125 Query: 117 AIVEGP 122 I P Sbjct: 126 CIRMQP 131 >gi|167767279|ref|ZP_02439332.1| hypothetical protein CLOSS21_01798 [Clostridium sp. SS2/1] gi|317497306|ref|ZP_07955629.1| 4Fe-4S binding domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167711254|gb|EDS21833.1| hypothetical protein CLOSS21_01798 [Clostridium sp. SS2/1] gi|291559411|emb|CBL38211.1| electron transport complex, RnfABCDGE type, B subunit [butyrate-producing bacterium SSC/2] gi|316895375|gb|EFV17534.1| 4Fe-4S binding domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 278 Score = 47.8 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 30/83 (36%), Gaps = 11/83 (13%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P K + E + CI CK CE +C AI +E+ Sbjct: 191 VPENKKTRVQCSSKEFGKNVMSVCKAGCIGCKACEKVCRLGAIKVENNIA---------- 240 Query: 96 YDIDMIKCIYCGLCQEACPVDAI 118 ID KC+ CGLC CP I Sbjct: 241 -QIDYDKCVGCGLCAGKCPKGII 262 Score = 40.9 bits (94), Expect = 0.062, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 11/61 (18%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C A+CP AI+I +G ID C+ CG C E CP I P Sbjct: 144 CMGFGSCAAVCPENAISIVNGIAH-----------IDEEACVGCGKCAETCPKALIDLVP 192 Query: 123 N 123 Sbjct: 193 E 193 Score = 35.1 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 5/80 (6%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-----DIDMIKCIYCGLCQE 111 EE C+ C C CP I + + + + + CI C C++ Sbjct: 167 HIDEEACVGCGKCAETCPKALIDLVPENKKTRVQCSSKEFGKNVMSVCKAGCIGCKACEK 226 Query: 112 ACPVDAIVEGPNFEFATETR 131 C + AI N + Sbjct: 227 VCRLGAIKVENNIAQIDYDK 246 >gi|167759969|ref|ZP_02432096.1| hypothetical protein CLOSCI_02335 [Clostridium scindens ATCC 35704] gi|167662588|gb|EDS06718.1| hypothetical protein CLOSCI_02335 [Clostridium scindens ATCC 35704] Length = 708 Score = 47.8 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 25/66 (37%), Gaps = 9/66 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ CI C C +C G + D CI+CG C CPV++I Sbjct: 22 HEDLCIKCGQCRQVC---------EREIGVGRLYDLVSTKDTAICIHCGQCANVCPVNSI 72 Query: 119 VEGPNF 124 E + Sbjct: 73 TEVYEY 78 >gi|126659089|ref|ZP_01730229.1| pyruvate oxidoreductase [Cyanothece sp. CCY0110] gi|126619617|gb|EAZ90346.1| pyruvate oxidoreductase [Cyanothece sp. CCY0110] Length = 1210 Score = 47.8 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 33/105 (31%), Gaps = 26/105 (24%) Query: 58 NGEERCIACKLCEAICPA--------------QAITIES--GPRCHDGTRRTVRYDID-- 99 E+ C+ C C +CP A T + D + +++ I Sbjct: 688 WDEDVCVQCGKCVLVCPHAVIRSKVYEEAALSNAPTSFKSAEAKDLDWKKTDLKFTIQVA 747 Query: 100 MIKCIYCGLCQEACPV--------DAIVEGPNFEFATETRQELYY 136 C CG+C + CP AI P + R+ Y Sbjct: 748 AEDCTGCGVCVDVCPAKNKSQPKLKAINMAPQLPIREQERENWDY 792 >gi|124028465|ref|YP_001013785.1| indolepyruvate oxidoreductase subunit iorA [Hyperthermus butylicus DSM 5456] gi|123979159|gb|ABM81440.1| indolepyruvate oxidoreductase subunit iorA [Hyperthermus butylicus DSM 5456] Length = 651 Score = 47.8 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 10/70 (14%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R + Y EE+C AC +C AI + +D C CG Sbjct: 571 RAKVKPPVYYVDEEKCTACGICYTAFNCPAIRRRPDGKA----------MVDPALCTGCG 620 Query: 108 LCQEACPVDA 117 +C + CP A Sbjct: 621 VCAQVCPFGA 630 >gi|284172810|ref|YP_003406192.1| formate dehydrogenase, alpha subunit [Haloterrigena turkmenica DSM 5511] gi|284017570|gb|ADB63519.1| formate dehydrogenase, alpha subunit [Haloterrigena turkmenica DSM 5511] Length = 1111 Score = 47.8 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 4/71 (5%) Query: 57 PNGEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 +CI C C C + IE ++ + C+ CG C Sbjct: 207 QIDRNKCILCNRCVEGCNDVQVEGVLRIEGHGEDTRIGFQSDAETMAESDCVSCGHCATV 266 Query: 113 CPVDAIVEGPN 123 CP A+ E Sbjct: 267 CPTGALTEKDI 277 >gi|269793044|ref|YP_003317948.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermanaerovibrio acidaminovorans DSM 6589] gi|269100679|gb|ACZ19666.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermanaerovibrio acidaminovorans DSM 6589] Length = 1175 Score = 47.8 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 36/121 (29%), Gaps = 20/121 (16%) Query: 12 FLKEFVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLC 69 F+KE +G + + P T S + A+ E CI C C Sbjct: 635 FVKEVLGPMLI--DEADSVPVSALPPDGTYPTGTSQYEKRNIAIDIPVWDPEVCIQCGKC 692 Query: 70 EAICPA--------------QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLCQEAC 113 CP A + ++Y + CI CGLC + C Sbjct: 693 SLACPHAAIRAKVYDPKLLEGAPAAFKSADAKWKDFQGMKYTVQVAPEDCIGCGLCVQNC 752 Query: 114 P 114 P Sbjct: 753 P 753 Score = 33.9 bits (76), Expect = 7.2, Method: Composition-based stats. Identities = 10/19 (52%), Positives = 10/19 (52%) Query: 100 MIKCIYCGLCQEACPVDAI 118 CI CG C ACP AI Sbjct: 683 PEVCIQCGKCSLACPHAAI 701 >gi|4972241|emb|CAB43935.1| pyruvate ferredoxin oxidoreductase [Clostridium pasteurianum] Length = 1175 Score = 47.8 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 35/105 (33%), Gaps = 28/105 (26%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGT------------RRT 93 A+ ++CI C C +CP I T E +G + Sbjct: 678 IAINVPEWQVDKCIQCNQCSYVCPHAVIRPFLLTEEETKNAPEGFTSKPALGLKTAEKLN 737 Query: 94 VRYDIDMIKCIYCGLCQEACP--VDAIVEGP---------NFEFA 127 I + C CG C + CP A++ P NFE+A Sbjct: 738 FAIKISPLDCTGCGNCAQVCPAKEKALIMKPAESQYKEAENFEYA 782 >gi|5911353|gb|AAD55756.1|AF132673_1 pyruvate:ferredoxin oxidoreductase [Clostridium pasteurianum] Length = 1098 Score = 47.8 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 35/105 (33%), Gaps = 28/105 (26%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGT------------RRT 93 A+ ++CI C C +CP I T E +G + Sbjct: 677 IAINVPEWQVDKCIQCNQCSYVCPHAVIRPFLLTEEETKNAPEGFTSKPALGLKTAEKLN 736 Query: 94 VRYDIDMIKCIYCGLCQEACP--VDAIVEGP---------NFEFA 127 I + C CG C + CP A++ P NFE+A Sbjct: 737 FAIKISPLDCTGCGNCAQVCPAKEKALIMKPAESQYKEAENFEYA 781 >gi|88797368|ref|ZP_01112958.1| pyruvate ferredoxin/flavodoxin oxidoreductase family protein [Reinekea sp. MED297] gi|88780237|gb|EAR11422.1| pyruvate ferredoxin/flavodoxin oxidoreductase family protein [Reinekea sp. MED297] Length = 1190 Score = 47.8 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 28/89 (31%), Gaps = 24/89 (26%) Query: 58 NGEERCIACKLCEAICPAQAIT---------------IESGPRCHDGTRRTV-RYDIDMI 101 + CI C C A+CP AI S P G T + Sbjct: 689 WDPDICIQCGNCVAVCPHAAIRSKFYHEDLLDGAPAGFRSTPTTARGFPETQYTLQVYAE 748 Query: 102 KCIYCGLCQEACPV--------DAIVEGP 122 C C LC EACPV AI P Sbjct: 749 DCTGCELCVEACPVRAEDDSSRRAINMTP 777 Score = 40.1 bits (92), Expect = 0.091, Method: Composition-based stats. Identities = 10/26 (38%), Positives = 10/26 (38%) Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFE 125 CI CG C CP AI E Sbjct: 691 PDICIQCGNCVAVCPHAAIRSKFYHE 716 >gi|323475168|gb|ADX85774.1| ABC transporter related protein [Sulfolobus islandicus REY15A] gi|323477900|gb|ADX83138.1| ABC transporter related protein [Sulfolobus islandicus HVE10/4] Length = 602 Score = 47.8 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 23/76 (30%), Gaps = 5/76 (6%) Query: 47 FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 F + ++C C CP G + I CI C Sbjct: 2 FVRVAVINYDFCKPDKCNL--ECINFCPVD---RSGGKAIELSDIVKGKPVIYEETCIGC 56 Query: 107 GLCQEACPVDAIVEGP 122 G+C + CP +AI Sbjct: 57 GICVKKCPYEAISIVN 72 >gi|312135772|ref|YP_004003110.1| dihydroorotate dehydrogenase family protein [Caldicellulosiruptor owensensis OL] gi|311775823|gb|ADQ05310.1| dihydroorotate dehydrogenase family protein [Caldicellulosiruptor owensensis OL] Length = 381 Score = 47.8 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 12/67 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E+C +C C +C AI ++G + C CGLC E CPV AI Sbjct: 326 DKEKCTSCSKCFTVCIYDAIEKDNGKFRVN------------QNCDGCGLCAELCPVKAI 373 Query: 119 VEGPNFE 125 E Sbjct: 374 SMVKRGE 380 >gi|291514556|emb|CBK63766.1| hypothetical protein AL1_12970 [Alistipes shahii WAL 8301] Length = 281 Score = 47.8 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 26/80 (32%), Gaps = 12/80 (15%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 + + +RC C C AICP QAI +CI C Sbjct: 199 KKNPVVYLPACDADRCTHCGRCAAICPTQAIARGDEAHTD------------PARCIRCC 246 Query: 108 LCQEACPVDAIVEGPNFEFA 127 C + CPV A F A Sbjct: 247 ACVKGCPVGARSFHTPFAAA 266 >gi|262044609|ref|ZP_06017664.1| electron transport complex protein RnfC [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259038010|gb|EEW39226.1| electron transport complex protein RnfC [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 582 Score = 47.8 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 40/112 (35%), Gaps = 13/112 (11%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEKGCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHNLADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 I F E A ++E +R R+E+ R + + R Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEE-----QRAAEAKARFEARQAR-LEREKAAR 474 >gi|255067077|ref|ZP_05318932.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria sicca ATCC 29256] gi|255048673|gb|EET44137.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria sicca ATCC 29256] Length = 282 Score = 47.8 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 27/75 (36%), Gaps = 11/75 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI S + + +C CGLC CPVD I Sbjct: 76 DEAACIGCTACIRACPVDAIMGASK----------FMHTVISDECTGCGLCLPPCPVDCI 125 Query: 119 VEGP-NFEFATETRQ 132 P E+ R Sbjct: 126 DMIPSEQEYLPTARS 140 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 13/22 (59%), Positives = 14/22 (63%) Query: 98 IDMIKCIYCGLCQEACPVDAIV 119 ID CI C C ACPVDAI+ Sbjct: 75 IDEAACIGCTACIRACPVDAIM 96 >gi|116749158|ref|YP_845845.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Syntrophobacter fumaroxidans MPOB] gi|116698222|gb|ABK17410.1| glutamate synthase (NADPH) GltB3 subunit [Syntrophobacter fumaroxidans MPOB] Length = 777 Score = 47.8 bits (112), Expect = 4e-04, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 27/82 (32%), Gaps = 5/82 (6%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 +F G + C C +C +CP AI+ + +D Sbjct: 697 PRMLKFDGIEQCASQCSSCGACRDCGICVTMCPQTAISRQEKDNP-----FGFEMVVDPD 751 Query: 102 KCIYCGLCQEACPVDAIVEGPN 123 +CI CG C +CP N Sbjct: 752 RCIGCGFCAGSCPCGIWDLVEN 773 >gi|320641983|gb|EFX11347.1| electron transport complex protein RnfB [Escherichia coli O157:H7 str. G5101] Length = 192 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 24/76 (31%), Gaps = 10/76 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI + + + C C LC + CP I Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTHCI 162 Query: 119 VEGPNFEFATETRQEL 134 E + +L Sbjct: 163 SLQQVAETPDSWKWDL 178 Score = 35.5 bits (80), Expect = 2.5, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C C +ACPVDAI Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132 >gi|317405896|gb|EFV86178.1| ferredoxin-NADP oxidoreductase [Achromobacter xylosoxidans C54] Length = 415 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 11/69 (15%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 L+++ E CI C CE CP AIT +S Y +D C C C Sbjct: 7 MEVLKQHLIDPEICIRCNTCEETCPIDAITHDSN-----------NYVVDPDICNSCMAC 55 Query: 110 QEACPVDAI 118 CP +I Sbjct: 56 VPPCPTGSI 64 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 17/40 (42%) Query: 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 ++ ID CI C C+E CP+DAI N Sbjct: 1 MNAALPMEVLKQHLIDPEICIRCNTCEETCPIDAITHDSN 40 >gi|317486663|ref|ZP_07945480.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316922046|gb|EFV43315.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 377 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 7/70 (10%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 +CI C C +CP A+++E + ID +CI C C AC AI Sbjct: 197 YPKCIGCGQCVPLCPRSALSLEKAE-------KGRHAVIDKERCIGCYECVTACKQGAIG 249 Query: 120 EGPNFEFATE 129 E++ Sbjct: 250 VDTPNEYSDF 259 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 5/49 (10%) Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140 + R + KCI CG C CP A+ E A + R DKER Sbjct: 189 QHGRNVVIYPKCIGCGQCVPLCPRSALSL----EKAEKGR-HAVIDKER 232 >gi|315637870|ref|ZP_07893060.1| pyruvate-ferredoxin oxidoreductase [Campylobacter upsaliensis JV21] gi|315482111|gb|EFU72725.1| pyruvate-ferredoxin oxidoreductase [Campylobacter upsaliensis JV21] Length = 1187 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 40/132 (30%), Gaps = 28/132 (21%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA------------------QAIT 79 FE G+T RG + CI C C ++CP Sbjct: 668 FEHGTTEFEKRGVGVMVPRWIE-ANCIQCNQCASVCPHAVIRPFLINDEEMAKAPRGVKE 726 Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-----AIVEGPNFEFATETRQEL 134 + G + + + + + C C LC CP + +F + + Sbjct: 727 HALDAKGTKGEKLSFKIQVSPLDCTGCELCVHECPTKEKSLVMVPLQEEMDFGEQENADY 786 Query: 135 YYD----KERLL 142 + K+++L Sbjct: 787 LFKQIEYKDQIL 798 >gi|293410506|ref|ZP_06654082.1| conserved hypothetical protein [Escherichia coli B354] gi|291470974|gb|EFF13458.1| conserved hypothetical protein [Escherichia coli B354] Length = 411 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + ++C+ C C C G + + + +T + K Sbjct: 324 VPAEDLDRSYIVYPHINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 378 CVGCLLCGHVCPVGCIDLG 396 >gi|238760425|ref|ZP_04621564.1| Electron transport complex protein rnfB [Yersinia aldovae ATCC 35236] gi|238701377|gb|EEP93955.1| Electron transport complex protein rnfB [Yersinia aldovae ATCC 35236] Length = 207 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 24/78 (30%), Gaps = 10/78 (12%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C C CP AI + + + C C LC CP D Sbjct: 111 FIDEANCIGCTKCIQACPVDAIVGAT----------RAMHTVLPDLCTGCDLCVAPCPTD 160 Query: 117 AIVEGPNFEFATETRQEL 134 I P + +L Sbjct: 161 CIEMIPVATTTANWKWDL 178 >gi|218782172|ref|YP_002433490.1| formate dehydrogenase, alpha subunit [Desulfatibacillum alkenivorans AK-01] gi|218763556|gb|ACL06022.1| Cytoplasmic formate dehydrogenase, alpha subunit [Desulfatibacillum alkenivorans AK-01] Length = 920 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 30/94 (31%), Gaps = 13/94 (13%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC---PAQAITIESGPRCHD 88 T+ EK R RCI C C A C Sbjct: 149 YTVRQYPEKKDEPLIIR----------DYSRCIRCGRCVAACNEIQVNLAIDTGFLEEDP 198 Query: 89 GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + Y + C+YCG C +ACPV A+VE Sbjct: 199 FSNPDKAYPVAKDNCVYCGECIQACPVGALVERK 232 >gi|218700619|ref|YP_002408248.1| dihydropyrimidine dehydrogenase [Escherichia coli IAI39] gi|300935069|ref|ZP_07150100.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 21-1] gi|218370605|emb|CAR18412.1| putative oxidoreductase subunit [Escherichia coli IAI39] gi|300459650|gb|EFK23143.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 21-1] Length = 411 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + ++C+ C C C G + + + +T + K Sbjct: 324 VPAEDLDRSYIVYPHINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 378 CVGCLLCGHVCPVGCIDLG 396 >gi|84489476|ref|YP_447708.1| glutamate synthase subunit 2 [Methanosphaera stadtmanae DSM 3091] gi|84372795|gb|ABC57065.1| putative glutamate synthase, subunit 2 with ferredoxin domain [Methanosphaera stadtmanae DSM 3091] Length = 492 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 10/68 (14%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C C C + CP I + + C+ C +C++ CP Sbjct: 26 CDNPKKSLCKNCYSCYSNCPHDVYEIINDEPQP----------VHKENCVGCKICEQMCP 75 Query: 115 VDAIVEGP 122 +AI P Sbjct: 76 TNAIYVTP 83 >gi|73669053|ref|YP_305068.1| hypothetical protein Mbar_A1540 [Methanosarcina barkeri str. Fusaro] gi|72396215|gb|AAZ70488.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro] Length = 379 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 10/76 (13%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G++ +C C C C AI + I+ KCI C Sbjct: 299 GKYYKIYPRINRRKCTHCGACYLNCSPHAIEQLEDG----------SFKINEEKCILCYC 348 Query: 109 CQEACPVDAIVEGPNF 124 C+E CP +A+ +F Sbjct: 349 CRELCPSNAVEIKKSF 364 >gi|13541408|ref|NP_111096.1| indolepyruvate:ferredoxin oxidoreductase, alpha and beta subunits [Thermoplasma volcanium GSS1] gi|14324791|dbj|BAB59718.1| indolpyruvate ferredoxin oxidoreductase [IOR] alpha subunit [Thermoplasma volcanium GSS1] Length = 604 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 11/60 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+C C +C +I S + CI CG C E CP +AI Sbjct: 540 DLEKCTGCSICYDFFTCPSILPLSNKKA-----------FIDDSCIGCGACVEVCPFNAI 588 >gi|333019266|gb|EGK38551.1| putative pyruvate-flavodoxin oxidoreductase domain protein [Shigella flexneri K-227] Length = 593 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 32/138 (23%), Gaps = 24/138 (17%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 65 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 118 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPVDA 117 P AI + P + + C C LC E CP Sbjct: 119 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQMAPEDCTGCNLCVEVCPAKD 178 Query: 118 IVEGPNFEFATETRQELY 135 +RQE Sbjct: 179 RQNPEIKAINMMSRQEHV 196 >gi|298384459|ref|ZP_06994019.1| protein HymB [Bacteroides sp. 1_1_14] gi|298262738|gb|EFI05602.1| protein HymB [Bacteroides sp. 1_1_14] Length = 635 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 10/66 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L Y E CI C LC CPA AI+ + I+ KCI CG+C Sbjct: 577 LLTYTINPELCIGCHLCAKNCPADAISGL----------VRKPHVINPEKCIKCGMCMAR 626 Query: 113 CPVDAI 118 C AI Sbjct: 627 CKFKAI 632 Score = 38.2 bits (87), Expect = 0.44, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 8/62 (12%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 + + + Y I+ CI C LC + CP DAI + R+ + Sbjct: 563 HVRDKTCRAKQCKSLLTYTINPELCIGCHLCAKNCPADAI--------SGLVRKPHVINP 614 Query: 139 ER 140 E+ Sbjct: 615 EK 616 >gi|300088669|ref|YP_003759191.1| nitrite and sulphite reductase 4Fe-4S region [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528402|gb|ADJ26870.1| nitrite and sulphite reductase 4Fe-4S region [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 516 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 26/73 (35%), Gaps = 11/73 (15%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G + + + C C LC +C +AIT ID C CG Sbjct: 381 GFYGTMDFDYNADACTNCGLCVPVCKRRAITQAGD-----------NIVIDRESCRQCGQ 429 Query: 109 CQEACPVDAIVEG 121 C CP DA+ E Sbjct: 430 CVAVCPFDALTET 442 >gi|227828106|ref|YP_002829886.1| ATPase RIL [Sulfolobus islandicus M.14.25] gi|238620306|ref|YP_002915132.1| putative ATPase RIL [Sulfolobus islandicus M.16.4] gi|227459902|gb|ACP38588.1| ABC transporter related [Sulfolobus islandicus M.14.25] gi|238381376|gb|ACR42464.1| ABC transporter related [Sulfolobus islandicus M.16.4] Length = 602 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 23/76 (30%), Gaps = 5/76 (6%) Query: 47 FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 F + ++C C CP G + I CI C Sbjct: 2 FVRVAVINYDFCKPDKCNL--ECINFCPVD---RSGGKAIELSDIVKGKPVIYEETCIGC 56 Query: 107 GLCQEACPVDAIVEGP 122 G+C + CP +AI Sbjct: 57 GICVKKCPYEAISIVN 72 >gi|226940150|ref|YP_002795223.1| RnfB2 [Laribacter hongkongensis HLHK9] gi|226715076|gb|ACO74214.1| RnfB2 [Laribacter hongkongensis HLHK9] Length = 192 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 27/87 (31%), Positives = 33/87 (37%), Gaps = 15/87 (17%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 PF +G P+ R + E CI C LC CP AI + + Sbjct: 95 PFAEGMAQPKPRSVAVI-----DETTCIGCTLCIQACPVDAILGSAKQ----------MH 139 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPN 123 I +C C LC E CPVD I P Sbjct: 140 TILSSECTGCELCLEPCPVDCIRMEPI 166 >gi|163745493|ref|ZP_02152853.1| formate dehydrogenase, alpha subunit [Oceanibulbus indolifex HEL-45] gi|161382311|gb|EDQ06720.1| formate dehydrogenase, alpha subunit [Oceanibulbus indolifex HEL-45] Length = 921 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 5/65 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID----MIKCIYCGLCQEACP 114 + CI C LC C + + G +DID C+ CG C +ACP Sbjct: 147 NLDACIQCNLCVRACR-EVQVNDVIGMAGRGHDAYPVFDIDDPMGASTCVACGECVQACP 205 Query: 115 VDAIV 119 A++ Sbjct: 206 TGALM 210 >gi|161522384|ref|YP_001585313.1| dihydropyrimidine dehydrogenase [Burkholderia multivorans ATCC 17616] gi|189348740|ref|YP_001941936.1| dihydropyrimidine dehydrogenase [Burkholderia multivorans ATCC 17616] gi|160345937|gb|ABX19021.1| dihydroorotate dehydrogenase family protein [Burkholderia multivorans ATCC 17616] gi|189338878|dbj|BAG47946.1| dihydroorotate oxidase [Burkholderia multivorans ATCC 17616] Length = 435 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 6/76 (7%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + ++RCI C LC C + ++ R DG R +++ C+ Sbjct: 328 KYLNLQYDIKARIDQDRCIQCGLCHIACED--TSHQAITREKDGVR---HFEVVDADCVG 382 Query: 106 CGLCQEACPV-DAIVE 120 C LC CPV I Sbjct: 383 CNLCMHVCPVEQCITM 398 >gi|194425849|ref|ZP_03058405.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli B171] gi|194415904|gb|EDX32170.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli B171] Length = 740 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|332981913|ref|YP_004463354.1| glycyl-radical enzyme activating protein family [Mahella australiensis 50-1 BON] gi|332699591|gb|AEE96532.1| glycyl-radical enzyme activating protein family [Mahella australiensis 50-1 BON] Length = 301 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 10/86 (11%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L + ++CI C C +CP +A I++ R C +CG C + Sbjct: 45 LPQVQFFPQKCIGCGKCVEVCPKKAHAIDANGRREF----------RRELCRHCGRCVDV 94 Query: 113 CPVDAIVEGPNFEFATETRQELYYDK 138 C +A+V +E E+ DK Sbjct: 95 CYAEALVMTGKHMTVSEVMDEVMKDK 120 >gi|331270381|ref|YP_004396873.1| Fe-hydrogenase large subunit family protein [Clostridium botulinum BKT015925] gi|329126931|gb|AEB76876.1| Fe-hydrogenase large subunit family protein [Clostridium botulinum BKT015925] Length = 494 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 7/69 (10%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGT-------RRTVRYDIDMIKCIYCGLC 109 ++ C C +C+ +CP AI+ P R I +CI CG C Sbjct: 134 YINQDVCRECGMCKQVCPYNAISEVMRPCKTACPTGAICISPEDRRAVIKDEECISCGAC 193 Query: 110 QEACPVDAI 118 +ACP AI Sbjct: 194 MKACPFGAI 202 >gi|294341780|emb|CAZ90209.1| Dihydropyrimidine dehydrogenase [Thiomonas sp. 3As] Length = 438 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 5/71 (7%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + + CI C C C + ++ DG RR + + C+ Sbjct: 330 KYLNLNHISKAVIDQALCIQCGRCHIACED--TSHQAITATVDGQRR---FVVKEEDCVG 384 Query: 106 CGLCQEACPVD 116 C LC CPV Sbjct: 385 CNLCVNVCPVP 395 >gi|289450210|ref|YP_003474936.1| pyruvate synthase [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184757|gb|ADC91182.1| pyruvate synthase [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 1182 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 28/132 (21%), Positives = 45/132 (34%), Gaps = 19/132 (14%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAI---------------TIESGPRCHDGTRR 92 RG + E CI C C +CP I T+ + Sbjct: 677 RGIAVDVPHWI-PENCIQCNQCSYVCPHGVIRPFLVTEEEAAKAPATMTTIKGTKPYDGY 735 Query: 93 TVRYDIDMIKCIYCGLCQEACPV--DAIVEGPNFEFATETRQELYYDKERLLNNGDRWES 150 ++ C CG C + CP A+V P E ++ + Y E++ + +S Sbjct: 736 KFIIQPSVLDCTGCGSCAQVCPAKNKALVMQPIGENMQQS-EHWTYLTEKVTKKPNPMKS 794 Query: 151 EIVRNIVTDSPY 162 IV+ + PY Sbjct: 795 NIVKGTQFNMPY 806 >gi|284998328|ref|YP_003420096.1| ABC transporter related protein [Sulfolobus islandicus L.D.8.5] gi|284446224|gb|ADB87726.1| ABC transporter related protein [Sulfolobus islandicus L.D.8.5] Length = 602 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 23/76 (30%), Gaps = 5/76 (6%) Query: 47 FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 F + ++C C CP G + I CI C Sbjct: 2 FVRVAVINYDFCKPDKCNL--ECINFCPVD---RSGGKAIELSDIVKGKPVIYEETCIGC 56 Query: 107 GLCQEACPVDAIVEGP 122 G+C + CP +AI Sbjct: 57 GICVKKCPYEAISIVN 72 >gi|270261663|ref|ZP_06189936.1| transporter [Serratia odorifera 4Rx13] gi|270045147|gb|EFA18238.1| transporter [Serratia odorifera 4Rx13] Length = 190 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 24/84 (28%), Gaps = 10/84 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E E + E CI C C CP AI + + + Sbjct: 91 EPQPLGSEAAAEPVRQVAYIDEANCIGCTKCIQACPVDAIVGAT----------RAMHTV 140 Query: 99 DMIKCIYCGLCQEACPVDAIVEGP 122 C C LC CP D I P Sbjct: 141 ITDLCTGCDLCVAPCPTDCIEMKP 164 >gi|52843076|ref|YP_096875.1| iron-sulfur cluster binding protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52630187|gb|AAU28928.1| iron-sulfur cluster binding protein [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] Length = 204 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 35/93 (37%), Gaps = 13/93 (13%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C CP AI S + + I +C CGLC + CPVD I Sbjct: 82 DECIGCTKCIKACPVDAIIGSSK----------LMHAIITHECTGCGLCVDPCPVDCIEM 131 Query: 121 GPNFEFATETRQ--ELYYDKERLLNNGDRWESE 151 A + Y+ +++ D E + Sbjct: 132 VS-LPAAGYDKDLARQRYNAKQMRQLRDEHEKQ 163 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 15/35 (42%), Positives = 17/35 (48%) Query: 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 D TR I +CI C C +ACPVDAI Sbjct: 65 KEAIDNTRPPSVAAIKEDECIGCTKCIKACPVDAI 99 >gi|89895694|ref|YP_519181.1| hypothetical protein DSY2948 [Desulfitobacterium hafniense Y51] gi|89335142|dbj|BAE84737.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 290 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 9/80 (11%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G R +++CI C LC+A+CPA+AI + R+ +D C YCG Sbjct: 152 GIKGGVRPSWQQDQCIYCGLCQAVCPAKAIEV---------HRQEETLSLDSQLCTYCGK 202 Query: 109 CQEACPVDAIVEGPNFEFAT 128 C ++CP A F + Sbjct: 203 CVKSCPTSAWEGERGFLLSF 222 Score = 40.5 bits (93), Expect = 0.074, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 3/53 (5%) Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 C + E G R +CIYCGLCQ CP AI E Sbjct: 139 CGNNCLKAEENDLGIKGGVRPSWQQ---DQCIYCGLCQAVCPAKAIEVHRQEE 188 >gi|146278885|ref|YP_001169044.1| formate dehydrogenase, alpha subunit [Rhodobacter sphaeroides ATCC 17025] gi|145557126|gb|ABP71739.1| formate dehydrogenase, alpha subunit [Rhodobacter sphaeroides ATCC 17025] Length = 960 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 29/92 (31%), Gaps = 4/92 (4%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDID 99 + + + +CI C C C A+TIE + Sbjct: 162 PQWMAKDESNPYFTYDPSKCIVCSRCVRACEEVQGTFALTIEGRGFDSRVSAGMASDSFL 221 Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 C+ CG C +ACP + E E T R Sbjct: 222 TSDCVSCGACVQACPTATLQEKSVIEIGTPER 253 >gi|70995273|ref|XP_752397.1| RNase L inhibitor of the ABC superfamily [Aspergillus fumigatus Af293] gi|66850032|gb|EAL90359.1| RNase L inhibitor of the ABC superfamily, putative [Aspergillus fumigatus Af293] gi|159131151|gb|EDP56264.1| RNase L inhibitor of the ABC superfamily, putative [Aspergillus fumigatus A1163] Length = 703 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 1/76 (1%) Query: 47 FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 +RG A +C K C C + +G C + T + I CI C Sbjct: 18 YRGRVAFAYPDTFVPQCKP-KKCRQECKKSCPVVRTGKLCIEVTPESKIAFISERLCIGC 76 Query: 107 GLCQEACPVDAIVEGP 122 G+C + CP AI Sbjct: 77 GICPKKCPFGAIHIIN 92 >gi|330508937|ref|YP_004385365.1| formate dehydrogenase subunit alpha [Methanosaeta concilii GP-6] gi|328929745|gb|AEB69547.1| formate dehydrogenase, alpha subunit [Methanosaeta concilii GP-6] Length = 917 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 26/80 (32%), Gaps = 3/80 (3%) Query: 47 FRGEHALR--RYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIKC 103 FR LR + CI C C +C + + I + C Sbjct: 156 FRDMPVLREPFFDRNYNLCIMCSRCIRMCDEVRGLGILFNNPDFHRNHWIGPESLQEADC 215 Query: 104 IYCGLCQEACPVDAIVEGPN 123 +CG C +ACP A+ Sbjct: 216 KFCGACVDACPTGALFIRSE 235 >gi|317054863|ref|YP_004103330.1| electron transport complex, RnfABCDGE type subunit C [Ruminococcus albus 7] gi|315447132|gb|ADU20696.1| electron transport complex, RnfABCDGE type, C subunit [Ruminococcus albus 7] Length = 420 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 1/60 (1%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 P + CI C C CPA+ + + + + + CI CG C CP Sbjct: 338 NDPQQKTNCIKCGRCAHACPAKLMPMRIEKALKRRNKAALE-RLRPDLCIKCGACTYVCP 396 >gi|291523667|emb|CBK81960.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [Coprococcus catus GD/7] Length = 1170 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/124 (14%), Positives = 37/124 (29%), Gaps = 30/124 (24%) Query: 58 NGEERCIACKLCEAICPA----------------QAITIESGPRCHDGTRRTVRYDIDMI 101 +CI C C +CP A + + + + + + Sbjct: 684 WDAAKCIQCNQCSYVCPHATIRPVLLTDEEAAAAPANFGAVPGKANLAGKYQFKMQVSPL 743 Query: 102 KCIYCGLCQEACPVDAIVEGP-----------NFEFATETRQELYYDKERLLNNGDRWES 150 C+ CG C CP A+ P + A ++ ++ G ++E Sbjct: 744 DCLGCGSCANICPTKALEMVPLGTQLDEAPNWEYAVALPQKEN---PMDKYTVKGSQFEK 800 Query: 151 EIVR 154 ++ Sbjct: 801 PLLE 804 >gi|238796521|ref|ZP_04640029.1| Electron transport complex protein rnfC [Yersinia mollaretii ATCC 43969] gi|238719726|gb|EEQ11534.1| Electron transport complex protein rnfC [Yersinia mollaretii ATCC 43969] Length = 622 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 3/103 (2%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C LC CPA + + G + ++ CI CG C CP I Sbjct: 342 QSCIRCGLCVDACPAG-LLPQQLYWFSRGEEHEKARNHNLFDCIECGACAYVCP-SNIPL 399 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + + L + R R+E++ R + + R Sbjct: 400 VQYYRQEKAEIRALDQESARAAEAKARFEAKQAR-LAREKLAR 441 >gi|254502108|ref|ZP_05114259.1| formate dehydrogenase, alpha subunit [Labrenzia alexandrii DFL-11] gi|222438179|gb|EEE44858.1| formate dehydrogenase, alpha subunit [Labrenzia alexandrii DFL-11] Length = 922 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 5/78 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114 + CIAC LCE C + + G+ T +D + + C+ CG C ACP Sbjct: 143 NLDACIACNLCERACR-EVQVNDVIGMADRGSHTTPVFDLADPMGLSTCVACGECVSACP 201 Query: 115 VDAIVEGPNFEFATETRQ 132 A++E + +TR+ Sbjct: 202 TGALMEKSLLDADAKTRE 219 >gi|170024243|ref|YP_001720748.1| electron transport complex protein RnfC [Yersinia pseudotuberculosis YPIII] gi|226735459|sp|B1JKN4|RNFC_YERPY RecName: Full=Electron transport complex protein rnfC gi|169750777|gb|ACA68295.1| electron transport complex, RnfABCDGE type, C subunit [Yersinia pseudotuberculosis YPIII] Length = 698 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 3/103 (2%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C LC CPA + + G + ++ CI CG C CP I Sbjct: 375 QSCIRCGLCVDACPAG-LLPQQLYWFSRGEEHEKARNHNLFDCIECGACAYVCP-SNIPL 432 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + + L + R R+E++ R + + R Sbjct: 433 VQYYRQEKAEIRALDQESARAAEAKARFEAKQAR-LAREKLAR 474 >gi|153813652|ref|ZP_01966320.1| hypothetical protein RUMOBE_04075 [Ruminococcus obeum ATCC 29174] gi|149830268|gb|EDM85361.1| hypothetical protein RUMOBE_04075 [Ruminococcus obeum ATCC 29174] Length = 290 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 11/58 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI C +CE C +AI+ + ID KC YCG C ++CPVDA Sbjct: 167 DTCIHCGVCEKACREEAISFQDDKLI-----------IDNEKCNYCGRCAKSCPVDAW 213 Score = 34.3 bits (77), Expect = 6.1, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 20/51 (39%), Gaps = 3/51 (5%) Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 C + E G + CI+CG+C++AC +AI + Sbjct: 142 CQNNCLKAEENDVGIKGAAQISW---KEDTCIHCGVCEKACREEAISFQDD 189 >gi|149375891|ref|ZP_01893658.1| iron-sulfur cluster-binding protein, putative [Marinobacter algicola DG893] gi|149359771|gb|EDM48228.1| iron-sulfur cluster-binding protein, putative [Marinobacter algicola DG893] Length = 659 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 26/71 (36%), Gaps = 9/71 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++C C C ++CP A+ C+ CG+C+ CP AI Sbjct: 511 DSDKCTLCLACVSLCPTGALGDHPD---------RPEVQFTENACVQCGVCESTCPETAI 561 Query: 119 VEGPNFEFATE 129 P + + + Sbjct: 562 NLKPQLDLSKD 572 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 18/55 (32%), Gaps = 11/55 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C +CP +AI ID C CG C CP AI Sbjct: 291 CTRCLDVCPTEAIFSFGD-----------HVQIDSDICAGCGSCAAVCPTSAITM 334 Score = 34.7 bits (78), Expect = 4.1, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 1/51 (1%) Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 A A +E+ G +ID KC C C CP A+ + P+ Sbjct: 486 VSAMANGVEAPIPLPQGAPYGAI-EIDSDKCTLCLACVSLCPTGALGDHPD 535 >gi|145598188|ref|YP_001162264.1| electron transport complex protein RnfC [Yersinia pestis Pestoides F] gi|145209884|gb|ABP39291.1| iron-sulfur binding NADH dehydrogenase [Yersinia pestis Pestoides F] Length = 581 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 3/103 (2%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C LC CPA + + G + ++ CI CG C CP I Sbjct: 375 QSCIRCGLCVDACPAG-LLPQQLYWFSRGEEHEKARNHNLFDCIECGACAYVCP-SNIPL 432 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + + L + R R+E++ R + + R Sbjct: 433 VQYYRQEKAEIRALDQESARAAEAKARFEAKQAR-LAREKLAR 474 >gi|118443739|ref|YP_877665.1| ferredoxin [Clostridium novyi NT] gi|118134195|gb|ABK61239.1| polyferredoxin [Clostridium novyi NT] Length = 294 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 5/78 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQEAC 113 ++ C+AC C + CP I + + + R +I CI CGLC +AC Sbjct: 167 NKDNCVACGACVSTCPKNIIELVPKKQLVIVSCNSHDRGLDVKNICSTGCIGCGLCAKAC 226 Query: 114 PVDAIVEGPNFEFATETR 131 P +AI N ++ Sbjct: 227 PKEAITMENNLPVIDYSK 244 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 25/90 (27%), Positives = 32/90 (35%), Gaps = 11/90 (12%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 P ++ + L CI C LC CP +AIT+E+ Sbjct: 183 KNIIELVPKKQLVIVSCNSHDRGLDVKNICSTGCIGCGLCAKACPKEAITMENNLPV--- 239 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 ID KC+ CGLC CP AI Sbjct: 240 --------IDYSKCVNCGLCAMKCPTKAIQ 261 >gi|22125975|ref|NP_669398.1| electron transport complex protein RnfC [Yersinia pestis KIM 10] gi|108811874|ref|YP_647641.1| electron transport complex protein RnfC [Yersinia pestis Nepal516] gi|166210950|ref|ZP_02236985.1| electron transport complex protein RnfC [Yersinia pestis biovar Antiqua str. B42003004] gi|167424927|ref|ZP_02316680.1| electron transport complex protein RnfC [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229894929|ref|ZP_04510107.1| inner membrane iron-sulfur protein in SoxR-reducing complex [Yersinia pestis Pestoides A] gi|229902176|ref|ZP_04517297.1| inner membrane iron-sulfur protein in SoxR-reducing complex [Yersinia pestis Nepal516] gi|270490649|ref|ZP_06207723.1| electron transport complex, RnfABCDGE type, C subunit [Yersinia pestis KIM D27] gi|123073407|sp|Q1CIY9|RNFC_YERPN RecName: Full=Electron transport complex protein rnfC gi|21958919|gb|AAM85649.1|AE013811_2 putative membrane protein [Yersinia pestis KIM 10] gi|108775522|gb|ABG18041.1| iron-sulfur binding NADH dehydrogenase [Yersinia pestis Nepal516] gi|166208130|gb|EDR52610.1| electron transport complex protein RnfC [Yersinia pestis biovar Antiqua str. B42003004] gi|167056114|gb|EDR65892.1| electron transport complex protein RnfC [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229681072|gb|EEO77167.1| inner membrane iron-sulfur protein in SoxR-reducing complex [Yersinia pestis Nepal516] gi|229702024|gb|EEO90045.1| inner membrane iron-sulfur protein in SoxR-reducing complex [Yersinia pestis Pestoides A] gi|270339153|gb|EFA49930.1| electron transport complex, RnfABCDGE type, C subunit [Yersinia pestis KIM D27] gi|320014908|gb|ADV98479.1| inner membrane iron-sulfur protein in SoxR-reducing complex [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 659 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 3/103 (2%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C LC CPA + + G + ++ CI CG C CP I Sbjct: 375 QSCIRCGLCVDACPAG-LLPQQLYWFSRGEEHEKARNHNLFDCIECGACAYVCP-SNIPL 432 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + + L + R R+E++ R + + R Sbjct: 433 VQYYRQEKAEIRALDQESARAAEAKARFEAKQAR-LAREKLAR 474 >gi|45441842|ref|NP_993381.1| electron transport complex protein RnfC [Yersinia pestis biovar Microtus str. 91001] gi|45436704|gb|AAS62258.1| putative iron-sulfur binding NADH dehydrogenase [Yersinia pestis biovar Microtus str. 91001] Length = 659 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 3/103 (2%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C LC CPA + + G + ++ CI CG C CP I Sbjct: 375 QSCIRCGLCVDACPAG-LLPQQLYWFSRGEEHEKARNHNLFDCIECGACAYVCP-SNIPL 432 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + + L + R R+E++ R + + R Sbjct: 433 VQYYRQEKAEIRALDQESARAAEAKARFEAKQAR-LAREKLAR 474 >gi|51596491|ref|YP_070682.1| electron transport complex protein RnfC [Yersinia pseudotuberculosis IP 32953] gi|186895541|ref|YP_001872653.1| electron transport complex protein RnfC [Yersinia pseudotuberculosis PB1/+] gi|226735457|sp|B2K4K0|RNFC_YERPB RecName: Full=Electron transport complex protein rnfC gi|51589773|emb|CAH21403.1| putative iron-sulfur binding NADH dehydrogenase [Yersinia pseudotuberculosis IP 32953] gi|186698567|gb|ACC89196.1| electron transport complex, RnfABCDGE type, C subunit [Yersinia pseudotuberculosis PB1/+] Length = 659 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 3/103 (2%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C LC CPA + + G + ++ CI CG C CP I Sbjct: 375 QSCIRCGLCVDACPAG-LLPQQLYWFSRGEEHEKARNHNLFDCIECGACAYVCP-SNIPL 432 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + + L + R R+E++ R + + R Sbjct: 433 VQYYRQEKAEIRALDQESARAAEAKARFEAKQAR-LAREKLAR 474 >gi|162421102|ref|YP_001606696.1| electron transport complex protein RnfC [Yersinia pestis Angola] gi|226735458|sp|A9R8U6|RNFC_YERPG RecName: Full=Electron transport complex protein rnfC gi|162353917|gb|ABX87865.1| electron transport complex protein RnfC [Yersinia pestis Angola] Length = 659 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 3/103 (2%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C LC CPA + + G + ++ CI CG C CP I Sbjct: 375 QSCIRCGLCVDACPAG-LLPQQLYWFSRGEEHEKARNHNLFDCIECGACAYVCP-SNIPL 432 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + + L + R R+E++ R + + R Sbjct: 433 VQYYRQEKAEIRALDQESARAAEAKARFEAKQAR-LAREKLAR 474 >gi|153947990|ref|YP_001400871.1| electron transport complex protein RnfC [Yersinia pseudotuberculosis IP 31758] gi|166991049|sp|A7FHZ3|RNFC_YERP3 RecName: Full=Electron transport complex protein rnfC gi|152959485|gb|ABS46946.1| electron transport complex, RnfABCDGE type, C subunit [Yersinia pseudotuberculosis IP 31758] Length = 698 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 3/103 (2%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C LC CPA + + G + ++ CI CG C CP I Sbjct: 375 QSCIRCGLCVDACPAG-LLPQQLYWFSRGEEHEKARNHNLFDCIECGACAYVCP-SNIPL 432 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + + L + R R+E++ R + + R Sbjct: 433 VQYYRQEKAEIRALDQESARAAEAKARFEAKQAR-LAREKLAR 474 >gi|108807598|ref|YP_651514.1| electron transport complex protein RnfC [Yersinia pestis Antiqua] gi|149365837|ref|ZP_01887872.1| inner membrane iron-sulfur protein in SoxR-reducing complex [Yersinia pestis CA88-4125] gi|165927361|ref|ZP_02223193.1| electron transport complex protein RnfC [Yersinia pestis biovar Orientalis str. F1991016] gi|165938230|ref|ZP_02226789.1| electron transport complex protein RnfC [Yersinia pestis biovar Orientalis str. IP275] gi|166010764|ref|ZP_02231662.1| electron transport complex protein RnfC [Yersinia pestis biovar Antiqua str. E1979001] gi|167400753|ref|ZP_02306259.1| electron transport complex protein RnfC [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420227|ref|ZP_02311980.1| electron transport complex protein RnfC [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167470481|ref|ZP_02335185.1| electron transport complex protein RnfC [Yersinia pestis FV-1] gi|218929340|ref|YP_002347215.1| electron transport complex protein RnfC [Yersinia pestis CO92] gi|229897672|ref|ZP_04512828.1| inner membrane iron-sulfur protein in SoxR-reducing complex [Yersinia pestis biovar Orientalis str. PEXU2] gi|229898317|ref|ZP_04513464.1| inner membrane iron-sulfur protein in SoxR-reducing complex [Yersinia pestis biovar Orientalis str. India 195] gi|294503723|ref|YP_003567785.1| cell envelope integrity inner membrane protein TolA [Yersinia pestis Z176003] gi|122979618|sp|Q1C7K3|RNFC_YERPA RecName: Full=Electron transport complex protein rnfC gi|108779511|gb|ABG13569.1| putative iron-sulfur binding NADH dehydrogenase [Yersinia pestis Antiqua] gi|115347951|emb|CAL20873.1| putative iron-sulfur binding NADH dehydrogenase [Yersinia pestis CO92] gi|149292250|gb|EDM42324.1| inner membrane iron-sulfur protein in SoxR-reducing complex [Yersinia pestis CA88-4125] gi|165913891|gb|EDR32509.1| electron transport complex protein RnfC [Yersinia pestis biovar Orientalis str. IP275] gi|165920627|gb|EDR37875.1| electron transport complex protein RnfC [Yersinia pestis biovar Orientalis str. F1991016] gi|165990466|gb|EDR42767.1| electron transport complex protein RnfC [Yersinia pestis biovar Antiqua str. E1979001] gi|166961922|gb|EDR57943.1| electron transport complex protein RnfC [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049606|gb|EDR61014.1| electron transport complex protein RnfC [Yersinia pestis biovar Antiqua str. UG05-0454] gi|229688607|gb|EEO80676.1| inner membrane iron-sulfur protein in SoxR-reducing complex [Yersinia pestis biovar Orientalis str. India 195] gi|229694009|gb|EEO84058.1| inner membrane iron-sulfur protein in SoxR-reducing complex [Yersinia pestis biovar Orientalis str. PEXU2] gi|262362157|gb|ACY58878.1| electron transport complex protein RnfC [Yersinia pestis D106004] gi|262365490|gb|ACY62047.1| electron transport complex protein RnfC [Yersinia pestis D182038] gi|294354182|gb|ADE64523.1| cell envelope integrity inner membrane protein TolA [Yersinia pestis Z176003] Length = 620 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 3/103 (2%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C LC CPA + + G + ++ CI CG C CP I Sbjct: 375 QSCIRCGLCVDACPAG-LLPQQLYWFSRGEEHEKARNHNLFDCIECGACAYVCP-SNIPL 432 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + + L + R R+E++ R + + R Sbjct: 433 VQYYRQEKAEIRALDQESARAAEAKARFEAKQAR-LAREKLAR 474 >gi|330720452|gb|EGG98761.1| Electron transport complex protein RnfB [gamma proteobacterium IMCC2047] Length = 218 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 26/81 (32%), Gaps = 10/81 (12%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 E R E CI C C CP AI + + + Sbjct: 93 PLDEEHGEEKGKRVALIREAECIGCTKCIQACPMDAILGAAK----------HMHTVIAD 142 Query: 102 KCIYCGLCQEACPVDAIVEGP 122 +C C LC E CPVD I P Sbjct: 143 ECTGCDLCVEPCPVDCIDMVP 163 >gi|323525306|ref|YP_004227459.1| RnfABCDGE type electron transport complex subunit B [Burkholderia sp. CCGE1001] gi|323382308|gb|ADX54399.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia sp. CCGE1001] Length = 302 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 23/64 (35%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ CI C LC CP AI + + C C LC CPVD I Sbjct: 85 EEQICIGCTLCMQACPVDAIVGAPK----------HMHTVVAELCTGCDLCVPPCPVDCI 134 Query: 119 VEGP 122 P Sbjct: 135 SMPP 138 Score = 37.0 bits (84), Expect = 0.85, Method: Composition-based stats. Identities = 15/31 (48%), Positives = 17/31 (54%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 I+ CI C LC +ACPVDAIV P Sbjct: 84 IEEQICIGCTLCMQACPVDAIVGAPKHMHTV 114 >gi|242279981|ref|YP_002992110.1| cobyrinic acid ac-diamide synthase [Desulfovibrio salexigens DSM 2638] gi|242122875|gb|ACS80571.1| Cobyrinic acid ac-diamide synthase [Desulfovibrio salexigens DSM 2638] Length = 285 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 14/64 (21%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C C LC C AI+ + + + KC CG+C CPV+A+ Sbjct: 64 NPELCTQCGLCAEHCKFDAISKD--------------FAVMPEKCEGCGVCSYVCPVEAV 109 Query: 119 VEGP 122 P Sbjct: 110 STAP 113 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 15/38 (39%) Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 R R +I+ C CGLC E C DAI Sbjct: 46 HPEIRDTHDFFSGERPEINPELCTQCGLCAEHCKFDAI 83 >gi|254976913|ref|ZP_05273385.1| hydrogenase [Clostridium difficile QCD-66c26] gi|255094299|ref|ZP_05323777.1| hydrogenase [Clostridium difficile CIP 107932] gi|255102481|ref|ZP_05331458.1| hydrogenase [Clostridium difficile QCD-63q42] gi|255308386|ref|ZP_05352557.1| hydrogenase [Clostridium difficile ATCC 43255] gi|255316053|ref|ZP_05357636.1| hydrogenase [Clostridium difficile QCD-76w55] gi|255518710|ref|ZP_05386386.1| hydrogenase [Clostridium difficile QCD-97b34] gi|255651832|ref|ZP_05398734.1| hydrogenase [Clostridium difficile QCD-37x79] gi|255657272|ref|ZP_05402681.1| hydrogenase [Clostridium difficile QCD-23m63] gi|260684858|ref|YP_003216143.1| hydrogenase [Clostridium difficile CD196] gi|260688516|ref|YP_003219650.1| hydrogenase [Clostridium difficile R20291] gi|296451875|ref|ZP_06893593.1| ferredoxin hydrogenase [Clostridium difficile NAP08] gi|296879729|ref|ZP_06903704.1| ferredoxin hydrogenase [Clostridium difficile NAP07] gi|306521619|ref|ZP_07407966.1| hydrogenase [Clostridium difficile QCD-32g58] gi|260211021|emb|CBA66340.1| hydrogenase [Clostridium difficile CD196] gi|260214533|emb|CBE07055.1| hydrogenase [Clostridium difficile R20291] gi|296259292|gb|EFH06169.1| ferredoxin hydrogenase [Clostridium difficile NAP08] gi|296429318|gb|EFH15190.1| ferredoxin hydrogenase [Clostridium difficile NAP07] Length = 458 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 33/80 (41%), Gaps = 10/80 (12%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 ++ C C+ C +CP AI E G I++ +C+ CG C + C Sbjct: 1 MIINIDKDLCTGCRECSKVCPVNAIEGEEGKPQE----------INLDRCVMCGQCVQTC 50 Query: 114 PVDAIVEGPNFEFATETRQE 133 A V FEF E +QE Sbjct: 51 KSYASVIDEGFEFLQEKKQE 70 >gi|114563959|ref|YP_751473.1| FAD linked oxidase domain-containing protein [Shewanella frigidimarina NCIMB 400] gi|114335252|gb|ABI72634.1| FAD linked oxidase domain protein [Shewanella frigidimarina NCIMB 400] Length = 934 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 33/91 (36%), Gaps = 9/91 (9%) Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 + I + + D + KCI CG C++ CP A+ P A R Sbjct: 511 LLNPGVILNDDTLVHVKNIKPCPVVDDFVDKCIECGFCEKTCPTSALNFSPRQRIAVL-R 569 Query: 132 QELYYDKERLLNNGDRWESEIVRNIVTDSPY 162 + ERL +GD+ + + S Y Sbjct: 570 E-----IERLEQSGDK---KAAAEMRASSKY 592 Score = 37.8 bits (86), Expect = 0.51, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 27/76 (35%), Gaps = 18/76 (23%) Query: 57 PNGEERCIACKLCEAICPAQAITIES-----------------GPRCHDGTRRTVRYDID 99 + ++CI C CE CP A+ + R + +YD+ Sbjct: 536 DDFVDKCIECGFCEKTCPTSALNFSPRQRIAVLREIERLEQSGDKKAAAEMRASSKYDVI 595 Query: 100 MIKCIYCGLCQEACPV 115 C C LC ACPV Sbjct: 596 -DTCAACQLCTIACPV 610 >gi|317484980|ref|ZP_07943864.1| indolepyruvate ferredoxin oxidoreductase [Bilophila wadsworthia 3_1_6] gi|316923785|gb|EFV44987.1| indolepyruvate ferredoxin oxidoreductase [Bilophila wadsworthia 3_1_6] Length = 622 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 11/87 (12%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 ++ E R + + ERC+ C C A + G Sbjct: 543 VSVIICREPCPLHMRRLSKAKKPVFGIDGERCVNCHTCVDTFGCPAFQLRDGKVS----- 597 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAI 118 ID ++CI C +C + CP +AI Sbjct: 598 ------IDPVQCIGCAVCAQVCPNNAI 618 >gi|302391035|ref|YP_003826855.1| hypothetical protein Acear_0240 [Acetohalobium arabaticum DSM 5501] gi|302203112|gb|ADL11790.1| protein of unknown function DUF362 [Acetohalobium arabaticum DSM 5501] Length = 385 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 7/66 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ C C+ C CP Q I + +ID +C C CQE CP DAI Sbjct: 318 DQQSCTQCRTCLDSCPQQVIIEQQDGN-------NTYLEIDESECSKCLCCQEVCPFDAI 370 Query: 119 VEGPNF 124 NF Sbjct: 371 ELKENF 376 >gi|331647798|ref|ZP_08348890.1| putative oxidoreductase [Escherichia coli M605] gi|281179239|dbj|BAI55569.1| putative dihydropyrimidine dehydrogenase [Escherichia coli SE15] gi|330911980|gb|EGH40490.1| hypothetical protein ECAA86_02352 [Escherichia coli AA86] gi|331043522|gb|EGI15660.1| putative oxidoreductase [Escherichia coli M605] Length = 411 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + ++C+ C C C G + + + +T + K Sbjct: 324 VPAEDLDRSYIVYPHINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 378 CVGCLLCGHVCPVGCIDLG 396 >gi|257061716|ref|YP_003139604.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Cyanothece sp. PCC 8802] gi|256591882|gb|ACV02769.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Cyanothece sp. PCC 8802] Length = 1212 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 31/105 (29%), Gaps = 26/105 (24%) Query: 58 NGEERCIACKLCEAICPAQA----------------ITIESGPRCHDGTRRTVRYDID-- 99 + C+ C C +CP + + D + +++ I Sbjct: 688 WDPDVCVQCGKCVLVCPHAVIRSKVYEETALVNAPETFKTASAKDLDWKKTQLKFTIQVA 747 Query: 100 MIKCIYCGLCQEACPV--------DAIVEGPNFEFATETRQELYY 136 C CG+C + CP AI P + R+ Y Sbjct: 748 AEDCTGCGVCVDVCPAKNKSQPKLKAINMAPQLPIRDQERENWDY 792 >gi|255013479|ref|ZP_05285605.1| dihydropyrimidine dehydrogenase [Bacteroides sp. 2_1_7] Length = 452 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 21/80 (26%), Gaps = 7/80 (8%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 P + R C+ C C C + ID Sbjct: 380 PNIVPPEKLERTQIHRPTVDNSLCLGCGRCFVSCNDG-------GHQAIRFTSMRKPVID 432 Query: 100 MIKCIYCGLCQEACPVDAIV 119 KC+ C LC CP AI Sbjct: 433 EQKCVGCHLCALVCPTFAIH 452 >gi|239626662|ref|ZP_04669693.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239516808|gb|EEQ56674.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 1178 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 21/81 (25%), Gaps = 15/81 (18%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG N + CI C C +CP +A Sbjct: 680 RGIAVKVPVWN-PDNCIQCNFCAYVCPHAVIRPVAMTADEAAKAPADMKVKDMTGMPGYK 738 Query: 94 VRYDIDMIKCIYCGLCQEACP 114 + + C CG C CP Sbjct: 739 FAITVSALDCTGCGSCANVCP 759 >gi|170682869|ref|YP_001744341.1| dihydropyrimidine dehydrogenase [Escherichia coli SMS-3-5] gi|170520587|gb|ACB18765.1| dihydroorotate dehydrogenase family protein [Escherichia coli SMS-3-5] Length = 411 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + ++C+ C C C G + + + +T + K Sbjct: 324 VPAEDLDRSYIVYPHINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 378 CVGCLLCGHVCPVGCIDLG 396 >gi|327400436|ref|YP_004341275.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein [Archaeoglobus veneficus SNP6] gi|327315944|gb|AEA46560.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Archaeoglobus veneficus SNP6] Length = 636 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 9/60 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ERC CKLC A+CP +AI+ + ID C CG+C ACPV AI Sbjct: 563 DGERCSGCKLCIALCPYRAISYDEE---------RGVCVIDETFCKGCGICVPACPVGAI 613 Score = 37.4 bits (85), Expect = 0.62, Method: Composition-based stats. Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%) Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 KC+ CG+C EACPV ++E+ + R +Y Sbjct: 240 DKCVGCGMCTEACPVRVA---NDYEYGMKERGAIYL 272 Score = 37.0 bits (84), Expect = 0.79, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 25/77 (32%), Gaps = 10/77 (12%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR-------TVRYDIDMIKCIY---C 106 ++C+ C +C CP + G ID C+Y C Sbjct: 236 YVDADKCVGCGMCTEACPVRVANDYEYGMKERGAIYLPYPGVLPNVPVIDRENCLYTRGC 295 Query: 107 GLCQEACPVDAIVEGPN 123 C E+C +AI N Sbjct: 296 QKCIESCAFEAINFEDN 312 >gi|325959023|ref|YP_004290489.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanobacterium sp. AL-21] gi|325330455|gb|ADZ09517.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanobacterium sp. AL-21] Length = 342 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 35/112 (31%), Gaps = 11/112 (9%) Query: 10 FLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69 +L EF + + + E RFR + +E CIAC C Sbjct: 5 IWYLYEFAR------KSWAENFAAAKSDKEIMDAPDRFRNFPEVH-----KEYCIACGAC 53 Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 A CPA + I+ CI CG C E CP D Sbjct: 54 TAACPAPMAIKLVRDEDSEHEDGFTYPVINNRGCIRCGFCAEVCPTDPKTLT 105 Score = 38.9 bits (89), Expect = 0.21, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 10/66 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 LR +++C C+LC CP+ AI S + KC+ C +C + Sbjct: 256 LRVITWDKDKCTNCRLCVKECPSGAIKYTSEEGVVR----------NPDKCLRCSICYQT 305 Query: 113 CPVDAI 118 CP AI Sbjct: 306 CPFGAI 311 Score = 38.2 bits (87), Expect = 0.38, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 10/82 (12%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 +++ + CI CK C C E + ID KCI CG C Sbjct: 120 PVDKKFVIDDYLCIRCKKCMKTCKVGDAIFEEDNKIV----------IDQSKCISCGECL 169 Query: 111 EACPVDAIVEGPNFEFATETRQ 132 + CPV ++G + E ++ Sbjct: 170 KTCPVKGAIKGIHISHVEEQKE 191 Score = 36.2 bits (82), Expect = 1.3, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 26/77 (33%), Gaps = 6/77 (7%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT-----RRTVRYDIDMIKCIYCG 107 CI C C +CP T+ G ++ ID CI C Sbjct: 77 FTYPVINNRGCIRCGFCAEVCPTDPKTLTCGENHLIREDFTILPVDKKFVIDDYLCIRCK 136 Query: 108 LCQEACPV-DAIVEGPN 123 C + C V DAI E N Sbjct: 137 KCMKTCKVGDAIFEEDN 153 >gi|319790804|ref|YP_004152444.1| benzoyL-CoA oxygenase/reductase, boxa protein [Variovorax paradoxus EPS] gi|315593267|gb|ADU34333.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Variovorax paradoxus EPS] Length = 429 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 11/67 (16%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 ++++ E CI C CEA CP AIT + Y + C C C Sbjct: 9 VIKQHLIDPEICIRCNTCEATCPVNAITHDDN-----------NYVVRADVCNGCMACIS 57 Query: 112 ACPVDAI 118 CP +I Sbjct: 58 PCPTGSI 64 Score = 38.2 bits (87), Expect = 0.37, Method: Composition-based stats. Identities = 12/26 (46%), Positives = 14/26 (53%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPN 123 ID CI C C+ CPV+AI N Sbjct: 15 IDPEICIRCNTCEATCPVNAITHDDN 40 >gi|282857992|ref|ZP_06267193.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Pyramidobacter piscolens W5455] gi|282584146|gb|EFB89513.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Pyramidobacter piscolens W5455] Length = 1188 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 31/92 (33%), Gaps = 18/92 (19%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRR---------- 92 RG N +++CI C C +CP I + R G Sbjct: 683 RGVAVFVPEWN-KDKCIQCNQCSMVCPHATIRPVLLDEDEAARRPAGFETLPVKAPKELA 741 Query: 93 --TVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 R + + C+ CG C + CP A+ P Sbjct: 742 GLQFRIQVSPLDCLGCGNCADICPAKALEMKP 773 >gi|242278205|ref|YP_002990334.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfovibrio salexigens DSM 2638] gi|242121099|gb|ACS78795.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfovibrio salexigens DSM 2638] Length = 1174 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 25/138 (18%), Positives = 39/138 (28%), Gaps = 27/138 (19%) Query: 31 KTTINYPFEKGST---SPRFRGEHALRRYPNGEERCIACKLCEAICPAQA---------- 77 + P + RG + + CI C C +CP A Sbjct: 653 PVSAFSPDGRFPMGTSRFEKRGVAIMVPEWI-MDNCIQCNQCSFVCPHSALRPVLVDEEE 711 Query: 78 ------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP--VDAIVEGP-----NF 124 + R ++ + C CG C + CP A+V P Sbjct: 712 MKIAPESFETMEAKGKGMEGLKYRMQVNTLDCQGCGNCADICPAKEKALVMKPLATQTEK 771 Query: 125 EFATETRQELYYDKERLL 142 E E+ K+R+L Sbjct: 772 EVPNYDFSEIVSFKDRIL 789 >gi|229579709|ref|YP_002838108.1| ATPase RIL [Sulfolobus islandicus Y.G.57.14] gi|228010424|gb|ACP46186.1| ABC transporter related [Sulfolobus islandicus Y.G.57.14] Length = 602 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 23/76 (30%), Gaps = 5/76 (6%) Query: 47 FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 F + ++C C CP G + I CI C Sbjct: 2 FVRVAVINYDFCKPDKCNL--ECINFCPVD---RSGGKAIELSDIVKGKPVIYEETCIGC 56 Query: 107 GLCQEACPVDAIVEGP 122 G+C + CP +AI Sbjct: 57 GICVKKCPYEAISIVN 72 >gi|215487368|ref|YP_002329799.1| dihydropyrimidine dehydrogenase [Escherichia coli O127:H6 str. E2348/69] gi|312967440|ref|ZP_07781655.1| uncharacterized protein yeiA [Escherichia coli 2362-75] gi|215265440|emb|CAS09841.1| predicted oxidoreductase [Escherichia coli O127:H6 str. E2348/69] gi|312287637|gb|EFR15542.1| uncharacterized protein yeiA [Escherichia coli 2362-75] gi|320196016|gb|EFW70640.1| dihydropyrimidine dehydrogenase [Escherichia coli WV_060327] Length = 411 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + ++C+ C C C G + + + +T + K Sbjct: 324 VPAEDLDRSYIVYPHINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 378 CVGCLLCGHVCPVGCIDLG 396 >gi|218960661|ref|YP_001740436.1| putative pyruvate-ferredoxin oxidoreductase (por-like) or pyruvate-flavodoxin oxidoreductase (ydbK-like), 4Fe-4S domain [Candidatus Cloacamonas acidaminovorans] gi|167729318|emb|CAO80229.1| putative pyruvate-ferredoxin oxidoreductase (por-like) or pyruvate-flavodoxin oxidoreductase (ydbK-like), 4Fe-4S domain [Candidatus Cloacamonas acidaminovorans] Length = 1173 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 26/83 (31%), Gaps = 14/83 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTR--------------RTVRYDIDMIK 102 E CI C C +CP AI + + + + + Sbjct: 683 HWLPENCIQCNQCSFVCPHSAIRAKLIKEEDLANKPASFNTLKAIGAPGYEYKVQVYIDD 742 Query: 103 CIYCGLCQEACPVDAIVEGPNFE 125 C C +C CP A+V P E Sbjct: 743 CQSCKVCVNECPKSALVMSPIEE 765 >gi|154505522|ref|ZP_02042260.1| hypothetical protein RUMGNA_03059 [Ruminococcus gnavus ATCC 29149] gi|153794180|gb|EDN76600.1| hypothetical protein RUMGNA_03059 [Ruminococcus gnavus ATCC 29149] Length = 633 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 30/69 (43%), Gaps = 10/69 (14%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 ALRRY ERC C C CP AI+ R + ID KCI CG C+ Sbjct: 573 ALRRYIISPERCKGCSKCARNCPVGAISG----------RIKEPFVIDNDKCIKCGACES 622 Query: 112 ACPVDAIVE 120 +C AI Sbjct: 623 SCAFGAIHI 631 Score = 37.4 bits (85), Expect = 0.60, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 19/62 (30%), Gaps = 8/62 (12%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 + RY I +C C C CPV AI + ++ D Sbjct: 560 HVVDKKCVSHTCTALRRYIISPERCKGCSKCARNCPVGAI--------SGRIKEPFVIDN 611 Query: 139 ER 140 ++ Sbjct: 612 DK 613 >gi|50843353|ref|YP_056580.1| NADH dehydrogenase subunit [Propionibacterium acnes KPA171202] gi|289424780|ref|ZP_06426562.1| 4Fe-4S binding domain protein [Propionibacterium acnes SK187] gi|289427742|ref|ZP_06429454.1| 4Fe-4S binding domain protein [Propionibacterium acnes J165] gi|295131424|ref|YP_003582087.1| 4Fe-4S binding domain protein [Propionibacterium acnes SK137] gi|50840955|gb|AAT83622.1| NADH dehydrogenase subunit [Propionibacterium acnes KPA171202] gi|289154743|gb|EFD03426.1| 4Fe-4S binding domain protein [Propionibacterium acnes SK187] gi|289159233|gb|EFD07425.1| 4Fe-4S binding domain protein [Propionibacterium acnes J165] gi|291375515|gb|ADD99369.1| 4Fe-4S binding domain protein [Propionibacterium acnes SK137] gi|313763088|gb|EFS34452.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL013PA1] gi|313773018|gb|EFS38984.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL074PA1] gi|313794095|gb|EFS42117.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL110PA1] gi|313802413|gb|EFS43638.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL110PA2] gi|313807854|gb|EFS46338.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL087PA2] gi|313812140|gb|EFS49854.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL025PA1] gi|313816886|gb|EFS54600.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL059PA1] gi|313819194|gb|EFS56908.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL046PA2] gi|313819767|gb|EFS57481.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL036PA1] gi|313823884|gb|EFS61598.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL036PA2] gi|313827245|gb|EFS64959.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL063PA1] gi|313828425|gb|EFS66139.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL063PA2] gi|313831118|gb|EFS68832.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL007PA1] gi|313833479|gb|EFS71193.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL056PA1] gi|313838113|gb|EFS75827.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL086PA1] gi|314914553|gb|EFS78384.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL005PA4] gi|314919203|gb|EFS83034.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL050PA1] gi|314920637|gb|EFS84468.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL050PA3] gi|314925724|gb|EFS89555.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL036PA3] gi|314931453|gb|EFS95284.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL067PA1] gi|314957013|gb|EFT01119.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL027PA1] gi|314957827|gb|EFT01930.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL002PA1] gi|314960668|gb|EFT04769.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL002PA2] gi|314963376|gb|EFT07476.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL082PA1] gi|314969729|gb|EFT13827.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL037PA1] gi|314974300|gb|EFT18396.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL053PA1] gi|314976928|gb|EFT21023.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL045PA1] gi|314979888|gb|EFT23982.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL072PA2] gi|314985814|gb|EFT29906.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL005PA1] gi|314988403|gb|EFT32494.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL005PA2] gi|314988827|gb|EFT32918.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL005PA3] gi|315077112|gb|EFT49187.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL053PA2] gi|315079802|gb|EFT51778.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL078PA1] gi|315084889|gb|EFT56865.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL027PA2] gi|315087242|gb|EFT59218.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL002PA3] gi|315088975|gb|EFT60951.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL072PA1] gi|315096823|gb|EFT68799.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL038PA1] gi|315100092|gb|EFT72068.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL059PA2] gi|315100584|gb|EFT72560.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL046PA1] gi|315106024|gb|EFT78000.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL030PA1] gi|315109355|gb|EFT81331.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL030PA2] gi|327325636|gb|EGE67434.1| NADH dehydrogenase subunit [Propionibacterium acnes HL096PA2] gi|327328230|gb|EGE69997.1| NADH dehydrogenase subunit [Propionibacterium acnes HL096PA3] gi|327333154|gb|EGE74881.1| NADH dehydrogenase subunit [Propionibacterium acnes HL097PA1] gi|327445306|gb|EGE91960.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL043PA1] gi|327446946|gb|EGE93600.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL043PA2] gi|327449057|gb|EGE95711.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL013PA2] gi|327451403|gb|EGE98057.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL092PA1] gi|327452597|gb|EGE99251.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL087PA3] gi|327457640|gb|EGF04295.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL083PA2] gi|328751920|gb|EGF65536.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL087PA1] gi|328756935|gb|EGF70551.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL020PA1] gi|328759052|gb|EGF72668.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL025PA2] gi|328762247|gb|EGF75739.1| NADH dehydrogenase subunit [Propionibacterium acnes HL099PA1] gi|332676292|gb|AEE73108.1| NADH-quinone oxidoreductase subunit I [Propionibacterium acnes 266] Length = 102 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 8/85 (9%) Query: 59 GEERCIACKLCEAICPAQAITIES--------GPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + C +C +C CPA ITI++ R + ID C+YCG+C Sbjct: 9 DVDACTSCMICARECPAWCITIDAHHEAVPDCDARRPRTVAVLDEFAIDWGLCMYCGMCI 68 Query: 111 EACPVDAIVEGPNFEFATETRQELY 135 E+CP DA+ + +R +L Sbjct: 69 ESCPFDALSWSDKRVSESLSRTDLV 93 >gi|89896716|ref|YP_520203.1| NADH dehydrogenase I chain F [Desulfitobacterium hafniense Y51] gi|89336164|dbj|BAE85759.1| NADH dehydrogenase I chain F [Desulfitobacterium hafniense Y51] Length = 597 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 19/98 (19%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEH--ALRRYPNGEERCIACKLCEAICPAQAITI 80 L+YF FE+ + + R L Y E+C C LC CPA I+ Sbjct: 514 TLKYF-------REEFEEHIHAKKCRAGVCSELLTYSIDAEKCKKCGLCARNCPANCISG 566 Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + Y ID +CI CG C ++C A+ Sbjct: 567 N----------KNTPYVIDGERCIRCGSCMDSCKFGAV 594 Score = 37.0 bits (84), Expect = 0.79, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 17/45 (37%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 I + + Y ID KC CGLC CP + I N Sbjct: 525 HIHAKKCRAGVCSELLTYSIDAEKCKKCGLCARNCPANCISGNKN 569 >gi|41033733|emb|CAF18533.1| indolepyruvate ferredoxin oxidoreductase alpha subunit [Thermoproteus tenax] Length = 650 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 26/63 (41%), Gaps = 10/63 (15%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 Y ++C +C +C + AI+ + + ID C C +C + CP Sbjct: 580 YVVDADKCKSCGICYNLLKCYAISKQPDGKA----------WIDPSLCNGCSMCAQVCPY 629 Query: 116 DAI 118 +AI Sbjct: 630 NAI 632 >gi|325969146|ref|YP_004245338.1| indolepyruvate:ferredoxin oxidoreductase (IOR), alpha subunit [Vulcanisaeta moutnovskia 768-28] gi|323708349|gb|ADY01836.1| indolepyruvate:ferredoxin oxidoreductase (IOR), alpha subunit [Vulcanisaeta moutnovskia 768-28] Length = 616 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 10/69 (14%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 + + RY + C AC +C + AI + ID C+ C +C Sbjct: 542 RNYVTRYYVNPDACKACGICYNLIACPAIVPLENRKA----------WIDPNMCVGCSVC 591 Query: 110 QEACPVDAI 118 + CP DAI Sbjct: 592 AQVCPYDAI 600 >gi|323188128|gb|EFZ73423.1| hypothetical protein ECRN5871_3885 [Escherichia coli RN587/1] Length = 411 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + ++C+ C C C G + + + +T + K Sbjct: 324 VPAEDLDRSYIVYPHINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 378 CVGCLLCGHVCPVGCIDLG 396 >gi|260425164|ref|ZP_05734388.2| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Dialister invisus DSM 15470] gi|260404360|gb|EEW97907.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Dialister invisus DSM 15470] Length = 1180 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 17/98 (17%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGT------- 90 TS R A++ E CI+C C +CP AI T E R +G Sbjct: 662 TSHYERPAAAIQVPEWIPENCISCNQCAFVCPHAAIRPFIVTEEEEARAPEGFICRDLPG 721 Query: 91 -RRTVRYDID--MIKCIYCGLCQEAC--PVDAIVEGPN 123 ++ ++Y I C C +C C P A+V P Sbjct: 722 PKKGLKYRIIVSPEDCYGCSICANVCPAPKKALVMKPI 759 >gi|302876890|ref|YP_003845523.1| hydrogenase, Fe-only [Clostridium cellulovorans 743B] gi|307687576|ref|ZP_07630022.1| hydrogenase, Fe-only [Clostridium cellulovorans 743B] gi|302579747|gb|ADL53759.1| hydrogenase, Fe-only [Clostridium cellulovorans 743B] Length = 574 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 44/117 (37%), Gaps = 9/117 (7%) Query: 20 FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79 L +++ KA+ T PF + + + +C+ C CEA C ++ T Sbjct: 110 LKLVIKH--KARAT--TPFMPKDKTEYL--DVRSKSIIIDRTKCVLCGRCEATCESKTGT 163 Query: 80 IESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 R D D C+ CG C CPV A+ E P+ + E ++ Sbjct: 164 ASIKIVRDGDLVRVSTTDDKCFDDTNCLLCGQCVAVCPVAALSEKPHIDRVKEALED 220 >gi|238919984|ref|YP_002933499.1| electron transport complex protein RnfC [Edwardsiella ictaluri 93-146] gi|259494050|sp|C5BDE7|RNFC_EDWI9 RecName: Full=Electron transport complex protein rnfC gi|238869553|gb|ACR69264.1| electron transport complex protein RnfC [Edwardsiella ictaluri 93-146] Length = 800 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 25/113 (22%), Positives = 38/113 (33%), Gaps = 23/113 (20%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C +CPA+ + + G + +CI CG C CP Sbjct: 376 QPCIRCGACADVCPAR-LLPQQLYWFSQGKEHDKARGYHLQECIECGACAYVCP------ 428 Query: 121 GPNFEFATETRQELYYDKERLLNNGD----------RWESEIVRNIVTDSPYR 163 N RQE K + D R+E+ + R + + R Sbjct: 429 -SNIPLVQYYRQE----KAEIRALDDEARRAAEAKARFEARLAR-LEREKAAR 475 >gi|222033908|emb|CAP76649.1| Uncharacterized protein yeiA [Escherichia coli LF82] gi|312946768|gb|ADR27595.1| dihydropyrimidine dehydrogenase [Escherichia coli O83:H1 str. NRG 857C] gi|324006546|gb|EGB75765.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 57-2] Length = 411 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + ++C+ C C C G + + + +T + K Sbjct: 324 VPAEDLDRSYIVYPHINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 378 CVGCLLCGHVCPVGCIDLG 396 >gi|218690296|ref|YP_002398508.1| dihydropyrimidine dehydrogenase [Escherichia coli ED1a] gi|218427860|emb|CAR08626.1| putative oxidoreductase subunit [Escherichia coli ED1a] Length = 411 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + ++C+ C C C G + + + +T + K Sbjct: 324 VPAEDLDRSYIVYPHINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 378 CVGCLLCGHVCPVGCIDLG 396 >gi|110642356|ref|YP_670086.1| dihydropyrimidine dehydrogenase [Escherichia coli 536] gi|117624348|ref|YP_853261.1| dihydropyrimidine dehydrogenase [Escherichia coli APEC O1] gi|161486180|ref|NP_754568.2| dihydropyrimidine dehydrogenase [Escherichia coli CFT073] gi|191170189|ref|ZP_03031743.1| dihydroorotate dehydrogenase family protein [Escherichia coli F11] gi|218559065|ref|YP_002391978.1| dihydropyrimidine dehydrogenase [Escherichia coli S88] gi|227887202|ref|ZP_04005007.1| dihydropyrimidine dehydrogenase [Escherichia coli 83972] gi|300981478|ref|ZP_07175559.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 200-1] gi|300982861|ref|ZP_07176325.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 45-1] gi|301048883|ref|ZP_07195876.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 185-1] gi|306814738|ref|ZP_07448900.1| dihydropyrimidine dehydrogenase [Escherichia coli NC101] gi|331658226|ref|ZP_08359188.1| putative oxidoreductase [Escherichia coli TA206] gi|110343948|gb|ABG70185.1| putative dihydropyrimidine dehydrogenase [Escherichia coli 536] gi|115513472|gb|ABJ01547.1| putative dihydropyrimidine dehydrogenase [Escherichia coli APEC O1] gi|190909705|gb|EDV69290.1| dihydroorotate dehydrogenase family protein [Escherichia coli F11] gi|218365834|emb|CAR03575.1| putative oxidoreductase subunit [Escherichia coli S88] gi|227835552|gb|EEJ46018.1| dihydropyrimidine dehydrogenase [Escherichia coli 83972] gi|294490821|gb|ADE89577.1| dihydroorotate dehydrogenase family protein [Escherichia coli IHE3034] gi|300299259|gb|EFJ55644.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 185-1] gi|300307551|gb|EFJ62071.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 200-1] gi|300408661|gb|EFJ92199.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 45-1] gi|305852132|gb|EFM52584.1| dihydropyrimidine dehydrogenase [Escherichia coli NC101] gi|307554216|gb|ADN46991.1| dihydroorotate dehydrogenase family protein [Escherichia coli ABU 83972] gi|307626312|gb|ADN70616.1| dihydropyrimidine dehydrogenase [Escherichia coli UM146] gi|315285782|gb|EFU45222.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 110-3] gi|315294488|gb|EFU53836.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 153-1] gi|315297989|gb|EFU57259.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 16-3] gi|323951943|gb|EGB47817.1| dihydroorotate dehydrogenase [Escherichia coli H252] gi|323955912|gb|EGB51665.1| dihydroorotate dehydrogenase [Escherichia coli H263] gi|323968071|gb|EGB63481.1| dihydroorotate dehydrogenase [Escherichia coli M863] gi|324013972|gb|EGB83191.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 60-1] gi|324114437|gb|EGC08406.1| dihydroorotate dehydrogenase [Escherichia fergusonii B253] gi|327252385|gb|EGE64044.1| hypothetical protein ECSTEC7V_2552 [Escherichia coli STEC_7v] gi|331056474|gb|EGI28483.1| putative oxidoreductase [Escherichia coli TA206] Length = 411 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + ++C+ C C C G + + + +T + K Sbjct: 324 VPAEDLDRSYIVYPHINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 378 CVGCLLCGHVCPVGCIDLG 396 >gi|333016869|gb|EGK36193.1| hypothetical protein SFK227_2748 [Shigella flexneri K-227] Length = 367 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + ++C+ C C C G + + + +T + K Sbjct: 280 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 333 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 334 CVGCLLCGHVCPVGCIELG 352 >gi|332754780|gb|EGJ85145.1| hypothetical protein SF434370_2306 [Shigella flexneri 4343-70] Length = 272 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + ++C+ C C C G + + + +T + K Sbjct: 185 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 238 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 239 CVGCLLCGHVCPVGCIELG 257 >gi|325968086|ref|YP_004244278.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Vulcanisaeta moutnovskia 768-28] gi|323707289|gb|ADY00776.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Vulcanisaeta moutnovskia 768-28] Length = 444 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 7/85 (8%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + + +C C +C A CP +A + + +KCI CG C Sbjct: 304 IFSIHIDDVKCSFCGVCFAKCPERAFDVGRDGNK-------TVLKFNSLKCIGCGHCARL 356 Query: 113 CPVDAIVEGPNFEFATETRQELYYD 137 CP AI EF ++ YD Sbjct: 357 CPEKAITINRAREFPMSDSTDVVYD 381 Score = 40.9 bits (94), Expect = 0.064, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 11/55 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C CP A +I + R I+ CI CGLC CP A+ Sbjct: 115 CNDCVNACPTNATSIVNN-----------RVVINENACIECGLCVSKCPTGALAM 158 >gi|317499936|ref|ZP_07958172.1| hydrogenase [Lachnospiraceae bacterium 8_1_57FAA] gi|331087841|ref|ZP_08336766.1| hypothetical protein HMPREF1025_00349 [Lachnospiraceae bacterium 3_1_46FAA] gi|316898653|gb|EFV20688.1| hydrogenase [Lachnospiraceae bacterium 8_1_57FAA] gi|330409536|gb|EGG88977.1| hypothetical protein HMPREF1025_00349 [Lachnospiraceae bacterium 3_1_46FAA] Length = 580 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 15/116 (12%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 L+E + +F+ +TT E +CI C+ C A+ Sbjct: 111 LQELCQELGVTDENYFEGETTHYELDESA------------VHMVRDNNKCILCRRCSAV 158 Query: 73 C-PAQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPVDAIVEGPNFE 125 C Q++ + T +++ + C+ CG C ACP A+ E N + Sbjct: 159 CEKVQSVGVIGPNNRGFATFIGSPFEMGLGDTSCVGCGQCIAACPTGALYEKSNID 214 >gi|294867469|ref|XP_002765114.1| Pyruvate-flavodoxin oxidoreductase, putative [Perkinsus marinus ATCC 50983] gi|239865036|gb|EEQ97831.1| Pyruvate-flavodoxin oxidoreductase, putative [Perkinsus marinus ATCC 50983] Length = 1397 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 34/105 (32%), Gaps = 27/105 (25%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAI---------------TIESGPRCHDGTRRTVR 95 AL ++C C +C CP I T ++ + Sbjct: 713 VALMVPIVDMDKCTQCNICSMSCPHACIRPFLLSQAEDDAKPSTFDTRKAKGGAEVAGLH 772 Query: 96 YDID--MIKCIYCGLCQEACPVDAIVEG----------PNFEFAT 128 Y I + C C +C ACP DA+ PN+E+A Sbjct: 773 YRIQVSPLDCTGCEVCVHACPYDALRMEHLADFREIEAPNWEYAV 817 >gi|226944038|ref|YP_002799111.1| electron transport complex protein RnfC [Azotobacter vinelandii DJ] gi|226718965|gb|ACO78136.1| Electron transport complex, subunit C [Azotobacter vinelandii DJ] Length = 688 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 39/114 (34%), Gaps = 14/114 (12%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD------ 116 CI C C +CPA + + G ++ CI CG C CP Sbjct: 371 CIRCGACADVCPAS-LLPQQLHFFALGREHEQLRAYNLFDCIECGACAYVCPSSLPLVQY 429 Query: 117 ---AIVEGPNFE----FATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 A E E A +R +ERL + ++ E+E + + R Sbjct: 430 YRVAKAEIRELEQKRHKAGHSRLRFELRQERLRKSEEQKEAERRARVEKAARAR 483 >gi|224371047|ref|YP_002605211.1| two-component fusion protein (N:nitroreductase family protein-C:ferredoxin domain) [Desulfobacterium autotrophicum HRM2] gi|223693764|gb|ACN17047.1| two-component fusion protein (N:nitroreductase family protein-C:ferredoxin domain) [Desulfobacterium autotrophicum HRM2] Length = 338 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 4/66 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C C +C CP + + + G + CI C C+ CP +I Sbjct: 25 NAETCSHCGMCAQTCPTSCLQWDEEKKIPYG----TGLVDLELACIGCNNCEAICPSSSI 80 Query: 119 VEGPNF 124 + Sbjct: 81 RVRGEY 86 Score = 33.5 bits (75), Expect = 8.6, Method: Composition-based stats. Identities = 7/43 (16%), Positives = 16/43 (37%) Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + + H + + + C +CG+C + CP + Sbjct: 7 DKVKKAHFPETQAYTLEFNAETCSHCGMCAQTCPTSCLQWDEE 49 >gi|221633449|ref|YP_002522674.1| formate dehydrogenase subunit alpha-like protein [Thermomicrobium roseum DSM 5159] gi|221156487|gb|ACM05614.1| formate dehydrogenase, alpha subunit homolog [Thermomicrobium roseum DSM 5159] Length = 811 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 5/85 (5%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA-ITIESGPRCHDGTRRTVR 95 PF + + ++ Y ERCI C C +C +T R Sbjct: 131 PFRRPKLARPYKHLSEYIDYK--WERCILCARCTRVCDEMIGVTAIEVLRRGLEGEIGSA 188 Query: 96 YDIDMIK--CIYCGLCQEACPVDAI 118 ++ID+ + C CG+C CPV A+ Sbjct: 189 WNIDLTRTTCTSCGMCIAVCPVGAL 213 >gi|149909799|ref|ZP_01898450.1| NuoG2 NADH I CHAIN G 2 [Moritella sp. PE36] gi|149807131|gb|EDM67087.1| NuoG2 NADH I CHAIN G 2 [Moritella sp. PE36] Length = 823 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 24/64 (37%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RCI C+ C +C + G + C +CG C E CPV A+ Sbjct: 144 NANRCIQCQRCVRVCEEVVGDVALGTMERGLDSEITGVGNSLKDCSHCGNCIEVCPVGAL 203 Query: 119 VEGP 122 + P Sbjct: 204 MSTP 207 >gi|153814131|ref|ZP_01966799.1| hypothetical protein RUMTOR_00340 [Ruminococcus torques ATCC 27756] gi|145848527|gb|EDK25445.1| hypothetical protein RUMTOR_00340 [Ruminococcus torques ATCC 27756] Length = 595 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 42/116 (36%), Gaps = 15/116 (12%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 L+E + +F+ +TT E +CI C+ C A+ Sbjct: 126 LQELCQELGVTDENYFEGETTHYELDESA------------VHMVRDNNKCILCRRCSAV 173 Query: 73 C-PAQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPVDAIVEGPNFE 125 C Q++ + T +++ + C+ CG C ACP A+ E N + Sbjct: 174 CEKVQSVGVIGPNNRGFATFIGSPFEMGLGDTSCVGCGQCIAACPTGALYEKSNID 229 >gi|134045694|ref|YP_001097180.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanococcus maripaludis C5] gi|132663319|gb|ABO34965.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Methanococcus maripaludis C5] Length = 397 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 29/66 (43%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 EE+C C C CP AIT+ + +R + + CI CG C ++CP A Sbjct: 265 WDEEKCAYCGPCALKCPNNAITVVNPKGLELPSRAKTQSQNEFKMCIRCGACVQSCPSGA 324 Query: 118 IVEGPN 123 + G Sbjct: 325 LRMGKI 330 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ CI C +C CP AI +G + + V++ +D CI CG C + CP D I Sbjct: 160 DKDSCIYCSICAQTCPWNAIF-VAGKKSPKRDKNIVKFSVDSDLCIGCGDCTDKCPKDLI 218 Query: 119 VE 120 V Sbjct: 219 VL 220 Score = 41.6 bits (96), Expect = 0.040, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 3/70 (4%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 A + N + CI C C CP+ A+ + + + R + C CG C E Sbjct: 299 AKTQSQNEFKMCIRCGACVQSCPSGALRM---GKITHNGKEYERIEFSPKLCDSCGKCVE 355 Query: 112 ACPVDAIVEG 121 CP D + Sbjct: 356 TCPYDMLTLT 365 Score = 40.5 bits (93), Expect = 0.072, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 28/76 (36%), Gaps = 3/76 (3%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID-MIKCIYCGLCQEACPVDAIVE 120 C+ C C CP + +E + I + +C+ CG+C CPV AI Sbjct: 93 FCVGCMKCIDACPDNYVGMEGVVEPAKRDITLPKEPITVLDECVGCGVCVSECPVGAISI 152 Query: 121 GPNFEFATETRQELYY 136 E A + Y Sbjct: 153 EN--EKAVVDKDSCIY 166 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 11/59 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C+ C +C + CP AI+IE+ +D CIYC +C + CP +AI Sbjct: 133 DECVGCGVCVSECPVGAISIENEKAV-----------VDKDSCIYCSICAQTCPWNAIF 180 Score = 35.1 bits (79), Expect = 3.0, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 3/57 (5%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 N + C C C CP A+ + + + + KC CG C + CP Sbjct: 27 NPFKVCQLCGNCVNACPNDALNLRE---IELNGKTIKQIEYFPTKCDLCGECVKDCP 80 >gi|150021476|ref|YP_001306830.1| hydrogenase, Fe-only [Thermosipho melanesiensis BI429] gi|149793997|gb|ABR31445.1| hydrogenase, Fe-only [Thermosipho melanesiensis BI429] Length = 582 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 3/71 (4%) Query: 57 PNGEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQEAC 113 RCI C+ C +C Q + I S T +D + +CI CG C C Sbjct: 139 QRDLSRCIKCQRCVRVCSEIQGMNIYSMVERGYKTVPQTAFDQPVYETECISCGQCAYLC 198 Query: 114 PVDAIVEGPNF 124 PV AI E P++ Sbjct: 199 PVGAIYETPDW 209 >gi|91211433|ref|YP_541419.1| dihydropyrimidine dehydrogenase [Escherichia coli UTI89] gi|237704612|ref|ZP_04535093.1| dihydropyrimidine dehydrogenase [Escherichia sp. 3_2_53FAA] gi|26108933|gb|AAN81136.1|AE016763_95 Hypothetical protein yeiA [Escherichia coli CFT073] gi|91073007|gb|ABE07888.1| hypothetical protein YeiA [Escherichia coli UTI89] gi|226900978|gb|EEH87237.1| dihydropyrimidine dehydrogenase [Escherichia sp. 3_2_53FAA] Length = 413 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + ++C+ C C C G + + + +T + K Sbjct: 326 VPAEDLDRSYIVYPHINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 379 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 380 CVGCLLCGHVCPVGCIDLG 398 >gi|325829783|ref|ZP_08163241.1| electron transport complex, RnfABCDGE type, B subunit [Eggerthella sp. HGA1] gi|325487950|gb|EGC90387.1| electron transport complex, RnfABCDGE type, B subunit [Eggerthella sp. HGA1] Length = 267 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 11/56 (19%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C+ C CP Q+IT+E+ ID CI CG C E CP AI Sbjct: 217 CIGCQKCAKTCPTQSITVENNLA-----------RIDTDTCIGCGTCIEVCPTHAI 261 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 8/73 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK--------CIYCGLCQ 110 C C C ICP I++ + T + + K CI C C Sbjct: 165 DTAACTGCGTCAKICPRGIISMVDQASSPTASVVTCKNTMAGAKTRKVCSVGCIGCQKCA 224 Query: 111 EACPVDAIVEGPN 123 + CP +I N Sbjct: 225 KTCPTQSITVENN 237 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 21/61 (34%), Gaps = 11/61 (18%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C CP AI +E+G ID C CG C + CP I Sbjct: 140 CLGYGDCAEACPFDAIVVENG-----------VARIDTAACTGCGTCAKICPRGIISMVD 188 Query: 123 N 123 Sbjct: 189 Q 189 >gi|322371863|ref|ZP_08046406.1| NADH:ubiquinone oxidoreductase, subunit G, iron- sulfur binding protein [Haladaptatus paucihalophilus DX253] gi|320548748|gb|EFW90419.1| NADH:ubiquinone oxidoreductase, subunit G, iron- sulfur binding protein [Haladaptatus paucihalophilus DX253] Length = 306 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 25/76 (32%), Gaps = 4/76 (5%) Query: 57 PNGEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 +CI C C C + +E + + C+ CG C Sbjct: 185 QIDRNKCILCNRCVEACNDVQVEGVLRMEGNAGETRIGFQNGAETMMESTCVSCGHCATV 244 Query: 113 CPVDAIVEGPNFEFAT 128 CP A+VE + AT Sbjct: 245 CPTGALVEQDMTDIAT 260 >gi|307545319|ref|YP_003897798.1| electron transporter RnfB [Halomonas elongata DSM 2581] gi|307217343|emb|CBV42613.1| K03616 electron transport complex protein RnfB [Halomonas elongata DSM 2581] Length = 325 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 12/78 (15%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C CP AI + + + +C C LC CPVD I Sbjct: 81 DECIGCTKCIQACPVDAILGAAKQ----------MHTVIESECTGCELCVAPCPVDCIDL 130 Query: 121 --GPNFEFATETRQELYY 136 P ++ A++ R + Y Sbjct: 131 LPHPEWQAASDERAQRDY 148 Score = 37.8 bits (86), Expect = 0.48, Method: Composition-based stats. Identities = 12/22 (54%), Positives = 14/22 (63%) Query: 97 DIDMIKCIYCGLCQEACPVDAI 118 I +CI C C +ACPVDAI Sbjct: 77 RIREDECIGCTKCIQACPVDAI 98 >gi|282881468|ref|ZP_06290142.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Prevotella timonensis CRIS 5C-B1] gi|281304694|gb|EFA96780.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Prevotella timonensis CRIS 5C-B1] Length = 1226 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 33/101 (32%), Gaps = 18/101 (17%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIE---------------SGPRCHDGTRR 92 RG A E CI C C +CP AI + Sbjct: 679 RGVEAFNPEWT-SENCIQCNKCAYVCPHAAIRPFVLDEEEVKGFDDTTLAMKVPRPMAGM 737 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 R + ++ C+ CG C + CP + +G + TR E Sbjct: 738 NFRIQVSVLDCVGCGNCADVCPGN--KQGKALKMVPFTRDE 776 >gi|253680886|ref|ZP_04861689.1| Fe-hydrogenase large subunit family protein [Clostridium botulinum D str. 1873] gi|253562735|gb|EES92181.1| Fe-hydrogenase large subunit family protein [Clostridium botulinum D str. 1873] Length = 494 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 7/69 (10%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGT-------RRTVRYDIDMIKCIYCGLC 109 ++ C C +C+ +CP AI+ P R I +CI CG C Sbjct: 134 YINQDACRECGMCKQVCPYNAISEVMRPCKTACPTGAICISPEDRRAIIKDEECISCGAC 193 Query: 110 QEACPVDAI 118 +ACP AI Sbjct: 194 MKACPFGAI 202 >gi|225851173|ref|YP_002731407.1| NADH dehydrogenase i chain g [Persephonella marina EX-H1] gi|225645394|gb|ACO03580.1| NADH dehydrogenase i chain g [Persephonella marina EX-H1] Length = 653 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 3/91 (3%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIAC-KLCEAICPAQAITIESGPRCHDGTR 91 T PF+K + ++ N C+ C +C+ + A A+ E Sbjct: 125 TPFTPFDKIRPEEDWESDY-FEFISNRCVLCLRCVSVCKNVVGADALFQEERG-FETVIS 182 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + +C +CGLC + CPV AI+ P Sbjct: 183 PDKKPMDTESRCEFCGLCVDICPVGAIIFKP 213 >gi|239813114|ref|YP_002942024.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Variovorax paradoxus S110] gi|239799691|gb|ACS16758.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Variovorax paradoxus S110] Length = 428 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 11/67 (16%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 ++++ E CI C CEA CP AIT + Y + C C C Sbjct: 9 VIKQHLIDPEICIRCNTCEATCPVNAITHDDN-----------NYVVRADICNGCMACIS 57 Query: 112 ACPVDAI 118 CP +I Sbjct: 58 PCPTGSI 64 Score = 38.2 bits (87), Expect = 0.39, Method: Composition-based stats. Identities = 12/26 (46%), Positives = 14/26 (53%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPN 123 ID CI C C+ CPV+AI N Sbjct: 15 IDPEICIRCNTCEATCPVNAITHDDN 40 >gi|254168947|ref|ZP_04875786.1| CobQ/CobB/MinD/ParA nucleotide binding domain, putative [Aciduliprofundum boonei T469] gi|197622053|gb|EDY34629.1| CobQ/CobB/MinD/ParA nucleotide binding domain, putative [Aciduliprofundum boonei T469] Length = 292 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 12/63 (19%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DAIV 119 ++CI C +C+ IC +AI IESG + I C CG C+ CPV DAI+ Sbjct: 67 DKCINCGVCDNICIYEAIYIESGQ-----------HKIKEYLCEGCGACKAVCPVEDAII 115 Query: 120 EGP 122 Sbjct: 116 IDD 118 >gi|188585138|ref|YP_001916683.1| electron transport complex, RnfABCDGE type, B subunit [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349825|gb|ACB84095.1| electron transport complex, RnfABCDGE type, B subunit [Natranaerobius thermophilus JW/NM-WN-LF] Length = 268 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 5/75 (6%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQE 111 E+C C C CP I + + H + + + CI CG+C + Sbjct: 163 HIDPEKCTGCNKCANTCPKDVIKMINANTKHHVRCNSCDKGKTVRQVCEVGCIGCGVCAK 222 Query: 112 ACPVDAIVEGPNFEF 126 CPVDAI N + Sbjct: 223 VCPVDAITIENNLAY 237 Score = 40.5 bits (93), Expect = 0.081, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 11/62 (17%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C +C +CP AITIE+ ID +C+ CG C+E CP D I Sbjct: 214 CIGCGVCAKVCPVDAITIENNLAY-----------IDSHECVNCGKCKEKCPRDCITSDL 262 Query: 123 NF 124 + Sbjct: 263 EY 264 Score = 38.2 bits (87), Expect = 0.44, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 23/64 (35%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C+ CE ICP AI ++ H ID KC C C CP D I Sbjct: 135 CDYGCLGLGTCEHICPFDAIEMQDNGIPH----------IDPEKCTGCNKCANTCPKDVI 184 Query: 119 VEGP 122 Sbjct: 185 KMIN 188 >gi|91203539|emb|CAJ71192.1| conserved hypothetical protein [Candidatus Kuenenia stuttgartiensis] Length = 304 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 12/96 (12%) Query: 30 AKTTINYPFEKGSTSPRFR--GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH 87 TI+ P + R G + + + C C +C CP I++ Sbjct: 215 EPATISSPAVYSVANTPRRKTGNWRIFKPQWNYDACTKCMICVNRCPDSCISVNKEGFPF 274 Query: 88 DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 D C C +C E CP AI + Sbjct: 275 A----------DYDNCKGCMICAEECPTKAIGKKRE 300 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 16/48 (33%), Gaps = 1/48 (2%) Query: 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN-FEFATET 130 PR G R + + C C +C CP I F FA Sbjct: 231 PRRKTGNWRIFKPQWNYDACTKCMICVNRCPDSCISVNKEGFPFADYD 278 >gi|148257859|ref|YP_001242444.1| benzoyl-CoA oxygenase, component A [Bradyrhizobium sp. BTAi1] gi|146410032|gb|ABQ38538.1| benzoyl-CoA oxygenase, component A [Bradyrhizobium sp. BTAi1] Length = 393 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 11/66 (16%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L+++ E CI C CE CP AIT ++ Y +D KC +C C + Sbjct: 5 LKQHLIDPEICIRCNTCEETCPEDAITHDNN-----------NYVVDATKCNFCMDCIQP 53 Query: 113 CPVDAI 118 CP +I Sbjct: 54 CPTGSI 59 Score = 37.8 bits (86), Expect = 0.54, Method: Composition-based stats. Identities = 15/40 (37%), Positives = 17/40 (42%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 ID CI C C+E CP DAI N T+ D Sbjct: 10 IDPEICIRCNTCEETCPEDAITHDNNNYVVDATKCNFCMD 49 >gi|119774967|ref|YP_927707.1| electron transport complex protein RnfC [Shewanella amazonensis SB2B] gi|119767467|gb|ABM00038.1| iron-sulfur cluster-binding protein [Shewanella amazonensis SB2B] Length = 880 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 10/98 (10%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACPVD 116 + CI C C CPA + P+ + YD ++ CI CG C CP Sbjct: 377 KPCIRCGECAVACPASLL-----PQQLFWHAKAEEYDKAQSYNLKDCIECGCCTYVCP-S 430 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVR 154 I + A ++ +K R+E+ I R Sbjct: 431 DIPLVEYYRVAKAAIRQQAEEKASAERAKVRFEARITR 468 >gi|332284974|ref|YP_004416885.1| hypothetical protein PT7_1721 [Pusillimonas sp. T7-7] gi|330428927|gb|AEC20261.1| hypothetical protein PT7_1721 [Pusillimonas sp. T7-7] Length = 209 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 25/81 (30%), Gaps = 10/81 (12%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 L+ E CI C LC CP AI + + + + Sbjct: 65 PLDTSCGEHRPLQVAVIDEAHCIGCTLCIQACPVDAIVGANK----------LMHTVLTE 114 Query: 102 KCIYCGLCQEACPVDAIVEGP 122 C C LC CPVD I Sbjct: 115 DCTGCDLCVAPCPVDCISMID 135 >gi|330834658|ref|YP_004409386.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Metallosphaera cuprina Ar-4] gi|329566797|gb|AEB94902.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Metallosphaera cuprina Ar-4] Length = 103 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 2/64 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CIA C CP P ++ I+ CI+C C CPV AI Sbjct: 41 DFDICIADGSCITACPVNVFQWYETPGNPVSEKKADP--INENACIFCMACVNVCPVAAI 98 Query: 119 VEGP 122 P Sbjct: 99 DVKP 102 >gi|313648904|gb|EFS13341.1| electron transport complex protein rnfC [Shigella flexneri 2a str. 2457T] Length = 676 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 39/112 (34%), Gaps = 13/112 (11%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CP + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPVD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 I F E A ++E +R R+E+ R + + R Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEE-----KRAAEAKARFEARQAR-LEREKATR 474 >gi|300950446|ref|ZP_07164365.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 116-1] gi|300450223|gb|EFK13843.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 116-1] Length = 496 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 294 PQEEQSCIRCSACADACPAD-LLPQQLFWFSKGQQHDKATTHNIADCIECGACAWVCP-S 351 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 352 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 400 >gi|255017249|ref|ZP_05289375.1| hypothetical protein LmonF_04728 [Listeria monocytogenes FSL F2-515] Length = 544 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 34/104 (32%), Gaps = 16/104 (15%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCH 87 T+ + AL E C C C +CP AI E Sbjct: 382 PPGTAAYEKRGIALEVPEWISENCTMCNECAFVCPHAAIRPILTDEEEMESAPEGFMTRE 441 Query: 88 DGTRRTVRYDID--MIKCIYCGLCQEACP--VDAIVEGPNFEFA 127 + +RY I + C C LC E CP A+V P E A Sbjct: 442 MRGKDGLRYRIQVSPMDCTGCNLCAETCPAKEKALVMKPFEEVA 485 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 5/80 (6%) Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV--EGPNFEFATETRQ 132 + A + G V I C C C CP AI E E+ Sbjct: 378 SGAYPPGTAAYEKRGIALEVPEWIS-ENCTMCNECAFVCPHAAIRPILTDEEEM--ESAP 434 Query: 133 ELYYDKERLLNNGDRWESEI 152 E + +E +G R+ ++ Sbjct: 435 EGFMTREMRGKDGLRYRIQV 454 >gi|238028215|ref|YP_002912446.1| ferredoxin [Burkholderia glumae BGR1] gi|237877409|gb|ACR29742.1| Iron-sulfur cluster-binding protein [Burkholderia glumae BGR1] Length = 279 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 23/64 (35%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ CI C LC CP AI + + C C LC CPVD I Sbjct: 83 DEQLCIGCTLCMQACPVDAIVGAPKQ----------MHTVVAELCTGCDLCVPPCPVDCI 132 Query: 119 VEGP 122 P Sbjct: 133 AMIP 136 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 14/21 (66%), Positives = 15/21 (71%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C LC +ACPVDAI Sbjct: 82 IDEQLCIGCTLCMQACPVDAI 102 >gi|268680517|ref|YP_003304948.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Sulfurospirillum deleyianum DSM 6946] gi|268618548|gb|ACZ12913.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Sulfurospirillum deleyianum DSM 6946] Length = 1187 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 31/96 (32%), Gaps = 19/96 (19%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI----------------E 81 FE G+T RG + E CI C C +CP I Sbjct: 669 FEHGTTEYEKRGVGVMVPKWIE-ENCIQCNQCAFVCPHAVIRPFLINDAEFAAAPEGVKT 727 Query: 82 SGPRCHDGTRRTVRYDIDMI--KCIYCGLCQEACPV 115 + ++Y I + C C LC EACP Sbjct: 728 HALDAKGKELKGLKYKIQVSSLDCTGCDLCAEACPT 763 >gi|222445705|ref|ZP_03608220.1| hypothetical protein METSMIALI_01346 [Methanobrevibacter smithii DSM 2375] gi|261349746|ref|ZP_05975163.1| tungsten formylmethanofuran dehydrogenase, subunit F [Methanobrevibacter smithii DSM 2374] gi|222435270|gb|EEE42435.1| hypothetical protein METSMIALI_01346 [Methanobrevibacter smithii DSM 2375] gi|288861701|gb|EFC93999.1| tungsten formylmethanofuran dehydrogenase, subunit F [Methanobrevibacter smithii DSM 2374] Length = 365 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 6/99 (6%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 S H +++CI CK CE CP AIT+ + + Sbjct: 115 PISEIEAYPHYNSYSKIDDDKCIYCKRCETACPQDAITVM-RKLPERQNLVSGEISVSDD 173 Query: 102 KCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140 C+YCG+CQE CP +AIV T ++ + DK++ Sbjct: 174 DCVYCGICQELCPAEAIVVDN-----TTGQESIVIDKDK 207 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 4/81 (4%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---- 97 + F E +++ E +C+ C +C +CP A+ + Y+ Sbjct: 71 KIAQNFHAEFDVQKISIDENKCVLCGMCSGLCPIDALVLTIDDVPISEIEAYPHYNSYSK 130 Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID KCIYC C+ ACP DAI Sbjct: 131 IDDDKCIYCKRCETACPQDAI 151 Score = 42.4 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 7/73 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-------IDMIKCIYCGLCQE 111 +++C+ C +C+ CP AI+ + + ID C+YCG C+ Sbjct: 204 DKDKCVYCLVCKRACPVDAISAVCRACSYGEYDFKAEDEVTTGSAVIDDELCVYCGWCEG 263 Query: 112 ACPVDAIVEGPNF 124 CP DA+ F Sbjct: 264 VCPTDAVETNKPF 276 Score = 42.0 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 7/58 (12%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C+ C +C+ +CPA+AI +++ ID KC+YC +C+ ACPVDAI Sbjct: 173 DDCVYCGICQELCPAEAIVVDNTTGQES-------IVIDKDKCVYCLVCKRACPVDAI 223 Score = 41.6 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 8/86 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + T+ F+G + +E C C C CP A+ R + Sbjct: 265 CPTDAVETNKPFKGTLEI-----DQEACQTCGACVDTCPCDALAFPVSTAPGQRLDRITK 319 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEG 121 +D CI C C + CP AI Sbjct: 320 HD---QYCIRCKACAKVCPNGAITVT 342 Score = 40.5 bits (93), Expect = 0.084, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 8/60 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E C+ C CE +CP A +ID C CG C + CP DA+ Sbjct: 251 DDELCVYCGWCEGVCPTDA--------VETNKPFKGTLEIDQEACQTCGACVDTCPCDAL 302 Score = 36.2 bits (82), Expect = 1.3, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 20/94 (21%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY----------- 96 R +R+ ++ C+ C +CE+ CP +AIT+ R Y Sbjct: 17 RAAEEVRKLSFNDQICLGCGVCESTCPVEAITLNPIAIDARHRRSNDVYFSGHEKIAQNF 76 Query: 97 ---------DIDMIKCIYCGLCQEACPVDAIVEG 121 ID KC+ CG+C CP+DA+V Sbjct: 77 HAEFDVQKISIDENKCVLCGMCSGLCPIDALVLT 110 Score = 34.3 bits (77), Expect = 6.2, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 17/34 (50%) Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 C+ CG+C+ CPV+AI P A R Y Sbjct: 32 CLGCGVCESTCPVEAITLNPIAIDARHRRSNDVY 65 >gi|150402794|ref|YP_001330088.1| ferredoxin [Methanococcus maripaludis C7] gi|150033824|gb|ABR65937.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus maripaludis C7] Length = 170 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 34/86 (39%), Gaps = 7/86 (8%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTV--RYDIDMIKCIYCGLCQEACPVDAIV- 119 CI C C+ CP +AI + + ID KC+YC C + CPV A+ Sbjct: 52 CIGCGGCKNACPTKAIEMIPVEPVKITETYSKESIPKIDYDKCVYCLYCHDFCPVFALFN 111 Query: 120 -EGPNFEFATETRQELYY-DKERLLN 143 P ++L D +LL Sbjct: 112 EISPIHPRHVG--EDLVLVDLSKLLE 135 >gi|91773397|ref|YP_566089.1| hypothetical protein Mbur_1428 [Methanococcoides burtonii DSM 6242] gi|91712412|gb|ABE52339.1| 4Fe-4S cluster-binding protein [Methanococcoides burtonii DSM 6242] Length = 379 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 28/81 (34%), Gaps = 12/81 (14%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 RF +R + N C C C C +AI E G I+ Sbjct: 295 PPFLVSRFGNLFTIRPFIN-TSSCTLCGSCVLNCSPKAIEQEDGK-----------LQIN 342 Query: 100 MIKCIYCGLCQEACPVDAIVE 120 KCI C C+E CP A+ Sbjct: 343 DEKCILCYCCRELCPSGAVEM 363 >gi|332758459|gb|EGJ88780.1| electron transport complex protein rnfC [Shigella flexneri K-671] gi|332767030|gb|EGJ97229.1| electron transport complex, RnfABCDGE type, C subunit [Shigella flexneri 2930-71] Length = 684 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 39/112 (34%), Gaps = 13/112 (11%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CP + + G + ++ CI CG C CP Sbjct: 347 PQEEQSCIRCSACADACPVD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 404 Query: 117 AIVEGPNF-----EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 I F E A ++E +R R+E+ R + + R Sbjct: 405 NIPLVQYFRQEKAEIAAIRQEE-----KRAAEAKARFEARQAR-LEREKATR 450 >gi|289191701|ref|YP_003457642.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus sp. FS406-22] gi|288938151|gb|ADC68906.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus sp. FS406-22] Length = 389 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + +CI C +C CP AI +G + +++++ KCIYC C E CP + I Sbjct: 165 DKSKCIYCSICAQTCPWNAIF-VAGKIPKKRRKEVKKFEVNAEKCIYCLKCVEVCPGNMI 223 Query: 119 VEGPN 123 Sbjct: 224 KVDKE 228 Score = 41.6 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 3/73 (4%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 + C C C CP A+ ++ R KC CG C EACP+ Sbjct: 27 DIDNFNVCNLCMECVKACPTGALV---EEEIEINGKKLKRVSYLAHKCEKCGNCAEACPI 83 Query: 116 DAIVEGPNFEFAT 128 +F ++ Sbjct: 84 GIKKVDDDFPYSK 96 Score = 40.5 bits (93), Expect = 0.084, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 21/64 (32%), Gaps = 3/64 (4%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + CI C C CP A+ + + + R + C CG C Sbjct: 292 IVVDEDKKEVRMCIVCGACTVACPTGALKL---GKIEHNGKEYNRIEFSPYLCDKCGKCV 348 Query: 111 EACP 114 E CP Sbjct: 349 EVCP 352 Score = 38.5 bits (88), Expect = 0.27, Method: Composition-based stats. Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 11/80 (13%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 G R A + E C+ C +C CP AIT+E G ID Sbjct: 117 PGVIDKPKREVKAPKEPIVVTEACVGCGICVPECPVSAITLEDGKAV-----------ID 165 Query: 100 MIKCIYCGLCQEACPVDAIV 119 KCIYC +C + CP +AI Sbjct: 166 KSKCIYCSICAQTCPWNAIF 185 >gi|121595761|ref|YP_987657.1| 4Fe-4S ferredoxin [Acidovorax sp. JS42] gi|120607841|gb|ABM43581.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Acidovorax sp. JS42] Length = 699 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 34/118 (28%), Gaps = 13/118 (11%) Query: 20 FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79 L L + P + ++RC C C + CPA A+ Sbjct: 531 LELALDHLVTNAPARELPEAIALPQGPSPWGTVVV----DKDRCTLCLSCVSACPAGALQ 586 Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 + C+ CGLC+ CP +AI P E Q + Sbjct: 587 DNPQA---------PQLRFTEQNCVQCGLCERTCPENAIALQPRMLLTPERGQPRVLN 635 Score = 41.2 bits (95), Expect = 0.042, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 9/55 (16%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C IC A+AI+ + + ++ C+ CG C CP A+ Sbjct: 318 VGCNACVDICSAEAISSDP---------VRQQVVVNPHLCVGCGACTTVCPTGAM 363 Score = 37.4 bits (85), Expect = 0.69, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 34/97 (35%), Gaps = 19/97 (19%) Query: 45 PRFRGEHALRRYPN---GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 + G AL+ + + C C C CP AI ++ Y IDM Sbjct: 176 KGWLGRFALQWTADNPIDLDLCTRCNACVTACPENAIGLD--------------YQIDMT 221 Query: 102 KCIYCGLCQEACPVD-AIVEGPNFEFATETRQELYYD 137 C C +AC V AI E ++ +L D Sbjct: 222 ACTGHRDCVKACAVAGAIRFEREAEVQSQDF-DLVLD 257 >gi|148643469|ref|YP_001273982.1| tungsten formylmethanofuran dehydrogenase, subunit F, FwdF [Methanobrevibacter smithii ATCC 35061] gi|89953728|gb|ABD83344.1| FwdF [Methanobrevibacter smithii] gi|148552486|gb|ABQ87614.1| tungsten formylmethanofuran dehydrogenase, subunit F, FwdF [Methanobrevibacter smithii ATCC 35061] Length = 365 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 6/99 (6%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 S H +++CI CK CE CP AIT+ + + Sbjct: 115 PISEIEAYPHYNSYSKIDDDKCIYCKRCETACPQDAITVM-RKLPERQNLVSGEISVSDD 173 Query: 102 KCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140 C+YCG+CQE CP +AIV T ++ + DK++ Sbjct: 174 DCVYCGICQELCPAEAIVVDN-----TTGQESIVIDKDK 207 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 4/81 (4%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---- 97 + F E +++ E +C+ C +C +CP A+ + Y+ Sbjct: 71 KIAQNFHAEFDVQKISIDENKCVLCGMCSGLCPIDALVLTIDDVPISEIEAYPHYNSYSK 130 Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID KCIYC C+ ACP DAI Sbjct: 131 IDDDKCIYCKRCETACPQDAI 151 Score = 42.4 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 7/73 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-------IDMIKCIYCGLCQE 111 +++C+ C +C+ CP AI+ + + ID C+YCG C+ Sbjct: 204 DKDKCVYCLVCKRACPVDAISAVCRACSYGEYDFKAEDEVTTGSAVIDDELCVYCGWCEG 263 Query: 112 ACPVDAIVEGPNF 124 CP DA+ F Sbjct: 264 VCPTDAVETNKPF 276 Score = 42.0 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 7/58 (12%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C+ C +C+ +CPA+AI +++ ID KC+YC +C+ ACPVDAI Sbjct: 173 DDCVYCGICQELCPAEAIVVDNTTGQES-------IVIDKDKCVYCLVCKRACPVDAI 223 Score = 41.6 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 30/86 (34%), Gaps = 8/86 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + T+ F+G + +E C C C CP A+ R + Sbjct: 265 CPTDAVETNKPFKGTLEI-----DQEACQTCGACVDTCPCDALAFPVSTAPGQRLDRITK 319 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEG 121 +D CI C C + CP AI Sbjct: 320 HD---QYCIRCKACAKVCPNGAITVT 342 Score = 40.5 bits (93), Expect = 0.085, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 8/60 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E C+ C CE +CP A +ID C CG C + CP DA+ Sbjct: 251 DDELCVYCGWCEGVCPTDA--------VETNKPFKGTLEIDQEACQTCGACVDTCPCDAL 302 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 20/94 (21%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY----------- 96 R +R+ ++ C+ C +CE+ CP +AIT+ R Y Sbjct: 17 RAAEEVRKLSFNDQICLGCGVCESTCPVEAITLNPIAIDARHRRSNDVYFSGHKKIAQNF 76 Query: 97 ---------DIDMIKCIYCGLCQEACPVDAIVEG 121 ID KC+ CG+C CP+DA+V Sbjct: 77 HAEFDVQKISIDENKCVLCGMCSGLCPIDALVLT 110 Score = 34.3 bits (77), Expect = 6.3, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 17/34 (50%) Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 C+ CG+C+ CPV+AI P A R Y Sbjct: 32 CLGCGVCESTCPVEAITLNPIAIDARHRRSNDVY 65 >gi|24113019|ref|NP_707529.1| electron transport complex protein RnfC [Shigella flexneri 2a str. 301] gi|30063144|ref|NP_837315.1| electron transport complex protein RnfC [Shigella flexneri 2a str. 2457T] gi|110805602|ref|YP_689122.1| electron transport complex protein RnfC [Shigella flexneri 5 str. 8401] gi|81724487|sp|Q83RB9|RNFC_SHIFL RecName: Full=Electron transport complex protein rnfC gi|122366544|sp|Q0T4E8|RNFC_SHIF8 RecName: Full=Electron transport complex protein rnfC gi|24051983|gb|AAN43236.1| putative membrane protein [Shigella flexneri 2a str. 301] gi|30041393|gb|AAP17122.1| putative membrane protein [Shigella flexneri 2a str. 2457T] gi|110615150|gb|ABF03817.1| putative membrane protein [Shigella flexneri 5 str. 8401] gi|281601063|gb|ADA74047.1| Electron transport complex protein rnfC [Shigella flexneri 2002017] gi|332757136|gb|EGJ87476.1| electron transport complex protein rnfC [Shigella flexneri 4343-70] gi|332758063|gb|EGJ88388.1| electron transport complex protein rnfC [Shigella flexneri 2747-71] gi|333003991|gb|EGK23526.1| electron transport complex protein rnfC [Shigella flexneri K-218] Length = 740 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 39/112 (34%), Gaps = 13/112 (11%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CP + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPVD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 I F E A ++E +R R+E+ R + + R Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEE-----KRAAEAKARFEARQAR-LEREKATR 474 >gi|21673683|ref|NP_661748.1| putative glutamate synthase (NADPH) small subunit [Chlorobium tepidum TLS] gi|21646803|gb|AAM72090.1| iron-sulfur cluster-binding protein, gltD family [Chlorobium tepidum TLS] Length = 577 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 17/96 (17%), Positives = 28/96 (29%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 + +AK T P + +RC++C C + + Sbjct: 477 HTPQAKRTSIKPEVVVGNHDELLEALTPEQAVTESKRCMSCGFCFDCKQCVSFCPQEAIT 536 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 + + KC+ C LC CP I G Sbjct: 537 RFRDNPAGEKVYTNYAKCVGCHLCSLVCPCGYIQMG 572 >gi|301021088|ref|ZP_07185129.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 69-1] gi|331673675|ref|ZP_08374438.1| putative oxidoreductase [Escherichia coli TA280] gi|300398269|gb|EFJ81807.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 69-1] gi|331068948|gb|EGI40340.1| putative oxidoreductase [Escherichia coli TA280] Length = 411 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + ++C+ C C C G + + + +T + K Sbjct: 324 VPAEDLDRSYIVYPHINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 378 CVGCLLCGHVCPVGCIDLG 396 >gi|256822166|ref|YP_003146129.1| RnfABCDGE type electron transport complex subunit C [Kangiella koreensis DSM 16069] gi|256795705|gb|ACV26361.1| electron transport complex, RnfABCDGE type, C subunit [Kangiella koreensis DSM 16069] Length = 539 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 32/90 (35%), Gaps = 2/90 (2%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 CI C C +CPA + + + D+ CI CG C CP I Sbjct: 375 PCIRCGACMDVCPASLLPQQLYWHAKS-DEFEKAEEYDLFDCIECGACAYVCP-SDIPLV 432 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESE 151 + +A T + +K + R E+ Sbjct: 433 QYYRYAKSTIRNQKVEKTKADKARLRHEAR 462 Score = 37.0 bits (84), Expect = 0.93, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 7/45 (15%) Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVE-------GPNFEFATE 129 + +++D + CI CG C + CP + + FE A E Sbjct: 365 KELKHDHLALPCIRCGACMDVCPASLLPQQLYWHAKSDEFEKAEE 409 >gi|225569031|ref|ZP_03778056.1| hypothetical protein CLOHYLEM_05110 [Clostridium hylemonae DSM 15053] gi|225161830|gb|EEG74449.1| hypothetical protein CLOHYLEM_05110 [Clostridium hylemonae DSM 15053] Length = 595 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 35/97 (36%), Gaps = 15/97 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 +RY F+ + + +K AL Y ++C C LC CP AI+ Sbjct: 512 TMRY-FRDEYVAHIVDKKCPAGVC----KALLSYKIDADKCKGCTLCARTCPNDAISGAV 566 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + I KC+ CG C E C AI Sbjct: 567 KEP----------HVIHQDKCVKCGACMEKCRFGAIY 593 >gi|27228278|gb|AAN85588.1| trichloroethene reductive dehalogenase [Dehalococcoides sp. FL2] Length = 554 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 3/60 (5%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID---MIKCIYCGLCQEACPVD 116 E C C +C CP QAI+ E Y+ KC C +C+ CP Sbjct: 434 REFCKTCGICAEHCPTQAISHEGPRYDSPHWDCVSGYEGWHLDYHKCTNCTICEAVCPFF 493 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%) Query: 103 CIYCGLCQEACPVDAI-VEGPNFE 125 C CG+C E CP AI EGP ++ Sbjct: 437 CKTCGICAEHCPTQAISHEGPRYD 460 >gi|304314565|ref|YP_003849712.1| polyferredoxin [Methanothermobacter marburgensis str. Marburg] gi|6996551|emb|CAB75573.1| polyferredoxin [Methanothermobacter thermautotrophicus] gi|302588024|gb|ADL58399.1| polyferredoxin [Methanothermobacter marburgensis str. Marburg] Length = 251 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 28/82 (34%), Gaps = 12/82 (14%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 R ++C AC CE CP AI + CI CG C C Sbjct: 124 MRDIQVTDKCTACGTCERFCPTGAIRVGETAAVDR------------SICIGCGACVNVC 171 Query: 114 PVDAIVEGPNFEFATETRQELY 135 P DAI ETR+ + Sbjct: 172 PSDAIKLERELGPVIETRRLMV 193 Score = 42.4 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 3/64 (4%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C C +CP+ AI +E TRR + D C+ C +C+E CP AI Sbjct: 157 DRSICIGCGACVNVCPSDAIKLERELGPVIETRRLMV---DQDACVECLVCEENCPTGAI 213 Query: 119 VEGP 122 Sbjct: 214 RIED 217 Score = 38.2 bits (87), Expect = 0.36, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 32/85 (37%), Gaps = 11/85 (12%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + RR ++ C+ C +CE CP AI IE G DG Sbjct: 171 CPSDAIKLERELGPVIETRRLMVDQDACVECLVCEENCPTGAIRIEDGEVVVDG------ 224 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVE 120 KCI C +C CPV A+ Sbjct: 225 -----DKCILCEVCSSKCPVAALKL 244 Score = 38.2 bits (87), Expect = 0.40, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 13/86 (15%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 + + +C+ C LC CP AI+ S R + C+ C +C + CPV Sbjct: 43 FIDITPKCVRCNLCVEECPVDAISDSSASRAAR----------ILDNCVKCEICAQTCPV 92 Query: 116 DAIVEGPNFEFATETRQELYYDKERL 141 I E +++ Y+ E L Sbjct: 93 RCI---NVVESTATIDEDVTYNLEYL 115 >gi|89893786|ref|YP_517273.1| hypothetical protein DSY1040 [Desulfitobacterium hafniense Y51] gi|89333234|dbj|BAE82829.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 422 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 6/60 (10%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C CE +CP AI++ + +D C+ CG+C +CP I Sbjct: 293 QECIGCGKCEKVCPVLAISMSTNAEGK------KIAQVDHEVCLGCGICVRSCPKKVIEL 346 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 12/23 (52%), Positives = 14/23 (60%) Query: 103 CIYCGLCQEACPVDAIVEGPNFE 125 CI CG C++ CPV AI N E Sbjct: 295 CIGCGKCEKVCPVLAISMSTNAE 317 >gi|89067347|ref|ZP_01154860.1| dihydropyrimidine dehydrogenase [Oceanicola granulosus HTCC2516] gi|89046916|gb|EAR52970.1| dihydropyrimidine dehydrogenase [Oceanicola granulosus HTCC2516] Length = 434 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 8/95 (8%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI C C A C E +++ +C+ Sbjct: 330 QYLNLNYVTKARIDQDLCIKCGRCYAAC-------EDTSHQAIAFNPGRTFEVIDEECVA 382 Query: 106 CGLCQEACPV-DAIVEGPNFEFATETRQELYYDKE 139 C LC + CPV D I + + R KE Sbjct: 383 CNLCVDVCPVEDCITMVELDDGTVDPRTGKVVQKE 417 >gi|253565123|ref|ZP_04842579.1| pyruvate-flavodoxin oxidoreductase [Bacteroides sp. 3_2_5] gi|251946588|gb|EES86965.1| pyruvate-flavodoxin oxidoreductase [Bacteroides sp. 3_2_5] Length = 1184 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 27/81 (33%), Gaps = 15/81 (18%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG A N E CI C C +CP A T Sbjct: 676 RGVAAFVPEWN-AENCIQCNKCAYVCPHASIRPFVLDAEEQKGANFEMLKAVGKQFDGMT 734 Query: 94 VRYDIDMIKCIYCGLCQEACP 114 R +D++ C+ CG C + CP Sbjct: 735 FRIQVDVLDCLGCGNCADICP 755 >gi|218780880|ref|YP_002432198.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfatibacillum alkenivorans AK-01] gi|218762264|gb|ACL04730.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfatibacillum alkenivorans AK-01] Length = 366 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 9/68 (13%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 YP E C+ C C C A+T++ T R ++ +CI CG+C C Sbjct: 284 NFYPVAGEDCVGCGTCTERCFFNALTVDEE---------TERAVVNPDECIGCGVCALGC 334 Query: 114 PVDAIVEG 121 P A+ Sbjct: 335 PTGALKLQ 342 >gi|157375411|ref|YP_001474011.1| putative glutamate synthase (NADPH) small subunit [Shewanella sediminis HAW-EB3] gi|157317785|gb|ABV36883.1| pyridine nucleotide-disulphide oxidoreductase family protein [Shewanella sediminis HAW-EB3] Length = 542 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 20/59 (33%), Gaps = 9/59 (15%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C CP QAI R Y ID +C C C CP AI Sbjct: 489 NCFECDGCYGACPEQAIIKLGEGRF---------YQIDYSRCTGCTACTLQCPTGAIHM 538 >gi|82734596|gb|ABB89705.1| trichloroethene reductive dehalogenase [Dehalococcoides sp. SFR-cis-DCE] gi|82734599|gb|ABB89707.1| trichloroethene reductive dehalogenase [Dehalococcoides sp. SNR-PCE] Length = 554 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 3/60 (5%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID---MIKCIYCGLCQEACPVD 116 E C C +C CP QAI+ E Y+ KC C +C+ CP Sbjct: 434 REFCKTCGICAEHCPTQAISHEGPRYDSPHWDCVSGYEGWHLDYHKCTNCTICEAVCPFF 493 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%) Query: 103 CIYCGLCQEACPVDAI-VEGPNFE 125 C CG+C E CP AI EGP ++ Sbjct: 437 CKTCGICAEHCPTQAISHEGPRYD 460 >gi|91786836|ref|YP_547788.1| 4Fe-4S ferredoxin [Polaromonas sp. JS666] gi|91696061|gb|ABE42890.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Polaromonas sp. JS666] Length = 695 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 30/103 (29%), Gaps = 9/103 (8%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 + P R + C C C + CPA A+ + Sbjct: 537 HAPAALPEAIELPRSGSPFGSLVVNTDTCTLCLSCVSACPASALQDNPERPQLKFIEKN- 595 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 C+ CGLC CP DAI P + ++ + Sbjct: 596 --------CVQCGLCAVTCPEDAITLQPRLLLTPQRKEARVLN 630 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 9/55 (16%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C IC A A++ + + + ++ CI CG C CP A+ Sbjct: 307 VGCNACIDICSAGAVSSQKERQ---------QIVVNPNLCIGCGACTTVCPTGAL 352 Score = 37.4 bits (85), Expect = 0.62, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 12/31 (38%) Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 + T ID+ C C C CP AI Sbjct: 170 KWTKDNPIDLDLCTRCNACVAVCPEGAIDLS 200 Score = 34.7 bits (78), Expect = 4.5, Method: Composition-based stats. Identities = 26/136 (19%), Positives = 41/136 (30%), Gaps = 29/136 (21%) Query: 16 FVGAFFLC-LRYFFKAKTTINYPFEKGSTSPRFRGEHALRRY------------PNGEER 62 A + + ++P ++ +L+ + P + Sbjct: 122 LADALDVTIFSQGVADPASGDFPAQERKYPVISGTGLSLQGWLGAFEAKWTKDNPIDLDL 181 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-AIVEG 121 C C C A+CP AI + Y +D KC C C V AI Sbjct: 182 CTRCNACVAVCPEGAID--------------LSYQVDSSKCTSHRDCVAVCKVAGAIDFN 227 Query: 122 PNFEFATETRQELYYD 137 + ATE +L D Sbjct: 228 REAQAATEAF-DLVLD 242 >gi|53714618|ref|YP_100610.1| pyruvate-flavodoxin oxidoreductase [Bacteroides fragilis YCH46] gi|60682637|ref|YP_212781.1| putative pyruvate-flavodoxin oxidoreductase [Bacteroides fragilis NCTC 9343] gi|265765918|ref|ZP_06093959.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides sp. 2_1_16] gi|52217483|dbj|BAD50076.1| pyruvate-flavodoxin oxidoreductase [Bacteroides fragilis YCH46] gi|60494071|emb|CAH08863.1| putative pyruvate-flavodoxin oxidoreductase [Bacteroides fragilis NCTC 9343] gi|263253586|gb|EEZ25051.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides sp. 2_1_16] gi|301164114|emb|CBW23670.1| putative pyruvate-flavodoxin oxidoreductase [Bacteroides fragilis 638R] Length = 1184 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 27/81 (33%), Gaps = 15/81 (18%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG A N E CI C C +CP A T Sbjct: 676 RGVAAFVPEWN-AENCIQCNKCAYVCPHASIRPFVLDAEEQKGANFEMLKAVGKQFDGMT 734 Query: 94 VRYDIDMIKCIYCGLCQEACP 114 R +D++ C+ CG C + CP Sbjct: 735 FRIQVDVLDCLGCGNCADICP 755 >gi|2209070|dbj|BAA20528.1| indolepyruvate ferredoxin oxidoreductase alpha subunit [Pyrococcus sp.] Length = 647 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 26/78 (33%), Gaps = 9/78 (11%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R Y E++C CK+C AI + + +D C CG Sbjct: 579 RRGMKWPIYHVVEDKCTGCKICIKTYGCPAIYWDPETKKA---------KVDPTMCWGCG 629 Query: 108 LCQEACPVDAIVEGPNFE 125 C + CP DA E Sbjct: 630 GCAQVCPFDAFEPMKEGE 647 >gi|332528159|ref|ZP_08404190.1| putative glutamate synthase (NADPH) small subunit [Rubrivivax benzoatilyticus JA2] gi|332112730|gb|EGJ12523.1| putative glutamate synthase (NADPH) small subunit [Rubrivivax benzoatilyticus JA2] Length = 541 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 10/59 (16%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C+ C C +CP A+ + RY +D C CGLC CP AI Sbjct: 488 NCLQCDNCYGVCPDNAVKKLA----------PGRYAVDYDYCKGCGLCAVECPCGAIDM 536 >gi|304394102|ref|ZP_07376025.1| formate dehydrogenase, alpha subunit [Ahrensia sp. R2A130] gi|303293542|gb|EFL87919.1| formate dehydrogenase, alpha subunit [Ahrensia sp. R2A130] Length = 931 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 5/77 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM----IKCIYCGLCQEACP 114 + CIAC LC C + + G +DI C+ CG C +ACP Sbjct: 151 NMDACIACNLCVRACR-EVQVNDVLGMADRGHHSVPVFDIHDPMGVSTCVTCGECVQACP 209 Query: 115 VDAIVEGPNFEFATETR 131 A+ E + TR Sbjct: 210 TGALFEKTLMDADNRTR 226 Score = 35.1 bits (79), Expect = 3.2, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 2/59 (3%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK-CIYCGL-CQ 110 P G C+ C C CP A+ ++ + TR +D C +CG+ CQ Sbjct: 189 IHDPMGVSTCVTCGECVQACPTGALFEKTLMDADNRTRVIEDFDAKTDSVCPFCGVGCQ 247 >gi|289192303|ref|YP_003458244.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus sp. FS406-22] gi|288938753|gb|ADC69508.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus sp. FS406-22] Length = 391 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + +CI C +C CP AI +G + +++++ KCIYC C E CP + I Sbjct: 164 DKSKCIYCSICAQTCPWNAIF-VAGKIPKKRRKEVKKFEVNAEKCIYCLKCVEVCPGNMI 222 Query: 119 VEGPN 123 Sbjct: 223 KVDKE 227 Score = 41.6 bits (96), Expect = 0.035, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 3/73 (4%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 + C C C CP A+ ++ R KC CG C EACP+ Sbjct: 26 DIDNFNVCNLCMECVKACPTGALV---EEEIEINGKKLKRVSYLAHKCEKCGNCAEACPI 82 Query: 116 DAIVEGPNFEFAT 128 +F ++ Sbjct: 83 GIKKVDDDFPYSK 95 Score = 40.5 bits (93), Expect = 0.086, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 21/64 (32%), Gaps = 3/64 (4%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + CI C C CP A+ + + + R + C CG C Sbjct: 291 IVVDEDKKEVRMCIVCGACTVACPTGALKL---GKIEHNGKEYNRIEFSPYLCDKCGKCV 347 Query: 111 EACP 114 E CP Sbjct: 348 EVCP 351 Score = 38.5 bits (88), Expect = 0.28, Method: Composition-based stats. Identities = 26/80 (32%), Positives = 33/80 (41%), Gaps = 11/80 (13%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 G R A + E C+ C +C CP AIT+E G ID Sbjct: 116 PGVIDKPKREVKAPKEPIVVTEACVGCGICVPECPVSAITLEDGKAV-----------ID 164 Query: 100 MIKCIYCGLCQEACPVDAIV 119 KCIYC +C + CP +AI Sbjct: 165 KSKCIYCSICAQTCPWNAIF 184 >gi|269119252|ref|YP_003307429.1| hydrogenase, Fe-only [Sebaldella termitidis ATCC 33386] gi|268613130|gb|ACZ07498.1| hydrogenase, Fe-only [Sebaldella termitidis ATCC 33386] Length = 587 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 5/68 (7%) Query: 59 GEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 ++CI C+ CE +C A++ + + D++ C YCG C CP Sbjct: 150 DMDKCIMCRRCETMCNEVQTVGALSGVNRG-FDAVVAPAMEMDLNDSVCTYCGQCVAVCP 208 Query: 115 VDAIVEGP 122 A+VE Sbjct: 209 TGALVERD 216 >gi|255505858|ref|ZP_05348533.3| iron-sulfur cluster-binding protein [Bryantella formatexigens DSM 14469] gi|255265431|gb|EET58636.1| iron-sulfur cluster-binding protein [Bryantella formatexigens DSM 14469] Length = 422 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 6/65 (9%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 RR ++ CI C +C CP G + R D KCI C CQE C Sbjct: 358 RRPRIDKKLCIRCGVCVEHCPV------PGKAVNFKNGRKEPPVYDYKKCIRCYCCQEMC 411 Query: 114 PVDAI 118 P AI Sbjct: 412 PRHAI 416 >gi|189467142|ref|ZP_03015927.1| hypothetical protein BACINT_03526 [Bacteroides intestinalis DSM 17393] gi|189435406|gb|EDV04391.1| hypothetical protein BACINT_03526 [Bacteroides intestinalis DSM 17393] Length = 635 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 10/67 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L Y E CI C LC CPA AI + + I+ KCI CG+C Sbjct: 577 LLTYTINPELCIGCHLCFKHCPADAILGD----------VRKPHVINPDKCIKCGMCMAR 626 Query: 113 CPVDAIV 119 C AI Sbjct: 627 CKFKAIN 633 >gi|114571228|ref|YP_757908.1| formate dehydrogenase subunit alpha [Maricaulis maris MCS10] gi|114341690|gb|ABI66970.1| formate dehydrogenase alpha subunit [Maricaulis maris MCS10] Length = 951 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 26/79 (32%), Gaps = 2/79 (2%) Query: 55 RYPNGEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + +CI C C C + + R D D +C+ CG C +A Sbjct: 160 YFDFEPSKCIVCSRCVRACDEVQGTLALTVEGRGFDSHISVGGPDFFNSECVSCGACVQA 219 Query: 113 CPVDAIVEGPNFEFATETR 131 CP + E E R Sbjct: 220 CPTATLQEKTVVEHGVPDR 238 >gi|20807413|ref|NP_622584.1| ferredoxin 3 [Thermoanaerobacter tengcongensis MB4] gi|20515935|gb|AAM24188.1| Ferredoxin 3 [Thermoanaerobacter tengcongensis MB4] Length = 74 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 24/62 (38%), Positives = 27/62 (43%), Gaps = 11/62 (17%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI+C C A CP AI G Y+ID KCI CG C+ CP Sbjct: 21 HYITEECISCGACAAECPVDAIYEGDGK-----------YEIDPEKCIDCGACEAVCPTG 69 Query: 117 AI 118 AI Sbjct: 70 AI 71 >gi|51246231|ref|YP_066115.1| hydrogenase [Desulfotalea psychrophila LSv54] gi|50877268|emb|CAG37108.1| related to hydrogenase [Desulfotalea psychrophila LSv54] Length = 483 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 24/68 (35%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGT------RRTVRYDIDMIKCIYCGLCQ 110 CI C C +CP AI P + R ID CI+CG C Sbjct: 144 HIDSNLCINCGKCLKVCPYHAIVQIPIPCEVACPIGAISKDVSGRQVIDYDLCIFCGKCM 203 Query: 111 EACPVDAI 118 CP A+ Sbjct: 204 AQCPFAAV 211 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 28/72 (38%), Gaps = 13/72 (18%) Query: 54 RRYPNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 R + C C + C CP AIT+ G ID CI CG C + Sbjct: 110 RTHYEVTNACQGCLAQACIQSCPKDAITMVQGKSH-----------IDSNLCINCGKCLK 158 Query: 112 ACPVDAIVEGPN 123 CP AIV+ P Sbjct: 159 VCPYHAIVQIPI 170 >gi|16082047|ref|NP_394472.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit related protein [Thermoplasma acidophilum DSM 1728] gi|10640327|emb|CAC12141.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit related protein [Thermoplasma acidophilum] Length = 605 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 20/62 (32%), Gaps = 11/62 (17%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 RC C +C +I S + CI CG C E CP + Sbjct: 539 YVDSNRCTGCTICYDFFTCPSILPLSNKKATI-----------DDSCIGCGACVEVCPFN 587 Query: 117 AI 118 AI Sbjct: 588 AI 589 >gi|93005680|ref|YP_580117.1| electron transport complex, RnfABCDGE type, B subunit [Psychrobacter cryohalolentis K5] gi|92393358|gb|ABE74633.1| electron transport complex, RnfABCDGE type, B subunit [Psychrobacter cryohalolentis K5] Length = 280 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 33/104 (31%), Gaps = 14/104 (13%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C CP AI + I C C LC CPVD I Sbjct: 123 DDCIGCTKCIPACPVDAIVGTGK----------HMHTIFTDLCTGCELCIAPCPVDCIDL 172 Query: 121 -GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 +T R ++E L + + + + S R Sbjct: 173 VTVERTLSTPER---TLEQEDLRQRYHTHLNRVSKQLADSSNSR 213 Score = 38.9 bits (89), Expect = 0.23, Method: Composition-based stats. Identities = 16/37 (43%), Positives = 16/37 (43%) Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 VR I CI C C ACPVDAIV T Sbjct: 116 VRAVIREDDCIGCTKCIPACPVDAIVGTGKHMHTIFT 152 >gi|332305735|ref|YP_004433586.1| electron transport complex, RnfABCDGE type, C subunit [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173064|gb|AEE22318.1| electron transport complex, RnfABCDGE type, C subunit [Glaciecola agarilytica 4H-3-7+YE-5] Length = 862 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 2/98 (2%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C CPA + + D ++ CI CG C CP I Sbjct: 385 QPCIRCSACADACPAS-LLPQQLFWHSKAKELDKAQDYNLFDCIECGACAYVCP-SEIPL 442 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158 + A + +K++ +R+ES R + Sbjct: 443 VHYYRVAKAEIRVEQEEKQKSDKARERFESRAARLVRE 480 >gi|317490042|ref|ZP_07948533.1| 4Fe-4S binding domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|316910883|gb|EFV32501.1| 4Fe-4S binding domain-containing protein [Eggerthella sp. 1_3_56FAA] Length = 267 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 11/56 (19%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C+ C CP Q+IT+E+ ID CI CG C E CP AI Sbjct: 217 CIGCQKCAKTCPTQSITVENNLA-----------RIDTDTCIGCGTCIEVCPTHAI 261 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 8/73 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK--------CIYCGLCQ 110 C C C ICP I++ + T + + K CI C C Sbjct: 165 DTAACTGCGTCAKICPRGIISMVDQASSPTASVVTCKNTMAGAKTRKVCSVGCIGCQKCA 224 Query: 111 EACPVDAIVEGPN 123 + CP +I N Sbjct: 225 KTCPTQSITVENN 237 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 21/61 (34%), Gaps = 11/61 (18%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C CP AI +E+G ID C CG C + CP I Sbjct: 140 CLGYGDCAEACPFDAIVVENG-----------VARIDTAACTGCGTCAKICPRGIISMVD 188 Query: 123 N 123 Sbjct: 189 Q 189 >gi|300691785|ref|YP_003752780.1| dihydroorotate dehydrogenase, FMN-linked, 4Fe-4S ferredoxin-type protein [Ralstonia solanacearum PSI07] gi|299078845|emb|CBJ51506.1| putative dihydroorotate dehydrogenase, FMN-linked, 4Fe-4S ferredoxin-type protein [Ralstonia solanacearum PSI07] Length = 435 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 6/63 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117 ++RCI C LC C + ++ R DG R +++ +C+ C LC CPV Sbjct: 341 DQDRCIQCGLCHIACED--TSHQAITREKDGKR---HFEVIDAECVGCNLCMHVCPVEQC 395 Query: 118 IVE 120 I Sbjct: 396 ITM 398 >gi|283833246|ref|ZP_06352987.1| electron transport complex protein RnfC [Citrobacter youngae ATCC 29220] gi|291070882|gb|EFE08991.1| electron transport complex protein RnfC [Citrobacter youngae ATCC 29220] Length = 674 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 35/107 (32%), Gaps = 9/107 (8%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ CI C C CPA + + G + ++ CI CG C CP I Sbjct: 373 EEKGCIRCSACADACPAD-LLPQQLYWFSKGQQHDKSTTHNIADCIECGACAWVCP-SNI 430 Query: 119 VEGPNFE------FATETRQELYYD-KERLLNNGDRWESEIVRNIVT 158 F +A ++ + K R R E E + Sbjct: 431 PLVQYFRQEKAEIYAISQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|265750656|ref|ZP_06086719.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] gi|263237552|gb|EEZ23002.1| conserved hypothetical protein [Bacteroides sp. 3_1_33FAA] Length = 403 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 6/62 (9%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + +++C AC C IC ++AI + + ID+ KCI CGLC++ Sbjct: 1 MINLSKIKKKCYACGACINICHSKAINMHEDEYGFSYPK------IDLEKCIECGLCEKV 54 Query: 113 CP 114 CP Sbjct: 55 CP 56 >gi|257790458|ref|YP_003181064.1| electron transport complex, RnfABCDGE type, B subunit [Eggerthella lenta DSM 2243] gi|257474355|gb|ACV54675.1| electron transport complex, RnfABCDGE type, B subunit [Eggerthella lenta DSM 2243] Length = 267 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 11/56 (19%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C+ C CP Q+IT+E+ ID CI CG C E CP AI Sbjct: 217 CIGCQKCAKTCPTQSITVENNLA-----------RIDTDTCIGCGTCIEVCPTHAI 261 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 8/73 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK--------CIYCGLCQ 110 C C C ICP I++ + T + + K CI C C Sbjct: 165 DTAACTGCGTCAKICPRGIISMVDQASSPTASVVTCKNTMAGAKTRKVCSVGCIGCQKCA 224 Query: 111 EACPVDAIVEGPN 123 + CP +I N Sbjct: 225 KTCPTQSITVENN 237 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 21/61 (34%), Gaps = 11/61 (18%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C CP AI +E+G ID C CG C + CP I Sbjct: 140 CLGYGDCAEACPFDAIVVENG-----------VARIDTAACTGCGTCAKICPRGIISMVD 188 Query: 123 N 123 Sbjct: 189 Q 189 >gi|224541365|ref|ZP_03681904.1| hypothetical protein CATMIT_00525 [Catenibacterium mitsuokai DSM 15897] gi|224525699|gb|EEF94804.1| hypothetical protein CATMIT_00525 [Catenibacterium mitsuokai DSM 15897] Length = 345 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 30/65 (46%), Gaps = 15/65 (23%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 Y +RCI C CE ICP + I E ID+ +C++CG C E CPV Sbjct: 143 YYTITDRCIHCGKCETICPQRCIHNE---------------VIDVAQCLHCGACLEICPV 187 Query: 116 DAIVE 120 AI Sbjct: 188 QAIEF 192 >gi|213646116|ref|ZP_03376169.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Typhi str. J185] Length = 335 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + +E+C+ C C C G + + + + K Sbjct: 248 IPAEDLDRSYIVYPRINQEKCVGCGRCYISCYDG------GHQAMEWDEHSHTPHCNTEK 301 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 302 CVGCLLCGHVCPVACIDLG 320 >gi|27228284|gb|AAN85592.1| trichloroethene reductive dehalogenase [bacterium PM-VC1] Length = 554 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 3/60 (5%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID---MIKCIYCGLCQEACPVD 116 E C C +C CP QAI+ E Y+ KC C +C+ CP Sbjct: 434 REFCKTCGICAEHCPTQAISHEGPRYDSPHWDCVSGYEGWHLDYHKCTNCTICEAVCPFF 493 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%) Query: 103 CIYCGLCQEACPVDAI-VEGPNFE 125 C CG+C E CP AI EGP ++ Sbjct: 437 CKTCGICAEHCPTQAISHEGPRYD 460 >gi|333002866|gb|EGK22422.1| hypothetical protein SFK272_2909 [Shigella flexneri K-272] Length = 380 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + ++C+ C C C G + + + +T + K Sbjct: 293 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 346 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 347 CVGCLLCGHVCPVGCIELG 365 >gi|332559555|ref|ZP_08413877.1| formate dehydrogenase, alpha subunit [Rhodobacter sphaeroides WS8N] gi|332277267|gb|EGJ22582.1| formate dehydrogenase, alpha subunit [Rhodobacter sphaeroides WS8N] Length = 960 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 29/92 (31%), Gaps = 4/92 (4%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDID 99 + + + +CI C C C A+TIE + Sbjct: 162 PQWMAKDESNPYFTYDPSKCIVCSRCVRACEEVQGTFALTIEGRGFDSRVSAGMASDSFL 221 Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 C+ CG C +ACP + E E T R Sbjct: 222 TSDCVSCGACVQACPTATLQEKSVIEIGTPER 253 >gi|325288356|ref|YP_004264537.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Syntrophobotulus glycolicus DSM 8271] gi|324963757|gb|ADY54536.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Syntrophobotulus glycolicus DSM 8271] Length = 1178 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 36/118 (30%), Gaps = 30/118 (25%) Query: 51 HALRRYPNGEERCIACKLCEAICPA--------QAITIESGPRCHDGTRR--------TV 94 A+ +E CI C C +CP A ++ P + + Sbjct: 679 IAVTIPRWIKENCIQCNQCSYVCPHATIRPFLLDADEVKKAPAGFETIKASGKELEGLQY 738 Query: 95 RYDIDMIKCIYCGLCQEACPV--DAIVEGP------------NFEFATETRQELYYDK 138 R + + C CG C E CP A+V P N+ + +K Sbjct: 739 RIQVTPLDCTGCGNCAEICPAKQKALVMKPAAEETEAEIPNWNYALTVSDKDNRIANK 796 >gi|293446497|ref|ZP_06662919.1| yeiA protein [Escherichia coli B088] gi|291323327|gb|EFE62755.1| yeiA protein [Escherichia coli B088] Length = 335 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + ++C+ C C C G + + + +T + K Sbjct: 248 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 301 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 302 CVGCLLCGHVCPVGCIELG 320 >gi|221057394|ref|XP_002261205.1| RNAse L inhibitor protein [Plasmodium knowlesi strain H] gi|194247210|emb|CAQ40610.1| RNAse L inhibitor protein, putative [Plasmodium knowlesi strain H] Length = 619 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 1/70 (1%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 LR ++C K C C +++G C + + I CI CG+C + Sbjct: 20 LRIAIVSTDKCKP-KKCHLECKKNCPIVKTGKFCIEVEHASKIAYISETLCIGCGICVKK 78 Query: 113 CPVDAIVEGP 122 CP AI Sbjct: 79 CPFAAITIIN 88 >gi|182419999|ref|ZP_02951233.1| hydrogenase-1 [Clostridium butyricum 5521] gi|237669483|ref|ZP_04529463.1| hydrogenase-1 [Clostridium butyricum E4 str. BoNT E BL5262] gi|149384911|gb|ABR25256.1| hydrogenase [Clostridium butyricum] gi|182376036|gb|EDT73623.1| hydrogenase-1 [Clostridium butyricum 5521] gi|188530086|gb|ACD62594.1| FeFe hydrogenase [Clostridium butyricum] gi|237654927|gb|EEP52487.1| hydrogenase-1 [Clostridium butyricum E4 str. BoNT E BL5262] Length = 574 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 3/78 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPV 115 +C+ C C A C + T R+ + D C+ CG C ACPV Sbjct: 143 DRSKCVLCGRCVAACKEKTGTGNIEISGKGPDRKVQAIEGKCFDETNCLLCGQCVAACPV 202 Query: 116 DAIVEGPNFEFATETRQE 133 A+ E P+ + E ++ Sbjct: 203 AALNEKPHIDRVKEALED 220 >gi|126466337|ref|YP_001041446.1| pyruvate ferredoxin oxidoreductase, delta subunit [Staphylothermus marinus F1] gi|126015160|gb|ABN70538.1| pyruvate ferredoxin oxidoreductase, delta subunit [Staphylothermus marinus F1] Length = 96 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 11/65 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + +C+ C LC CP AI + ++ C CG+C CPV+AI Sbjct: 40 DQGKCVKCMLCWLFCPDMAIIWDGEKIV-----------VNYDYCKGCGICAHECPVNAI 88 Query: 119 VEGPN 123 P Sbjct: 89 SMVPE 93 >gi|15679144|ref|NP_276261.1| polyferredoxin (MvhB) [Methanothermobacter thermautotrophicus str. Delta H] gi|41017307|sp|Q50784|MVHB_METTH RecName: Full=Polyferredoxin protein mvhB gi|2622237|gb|AAB85622.1| polyferredoxin (MvhB) [Methanothermobacter thermautotrophicus str. Delta H] Length = 412 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ CI C +C CP A+ SG + + ++++D CI C C EACP D I Sbjct: 173 DEDTCIKCGVCAQTCPWNAVY-ISGRKPEKRAKEIKKFELDEDACIGCNTCVEACPGDFI 231 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 1/65 (1%) Query: 60 EERCIACKLCEAICPAQAIT-IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C C CP A++ ++ + R + C CG C EACP D + Sbjct: 322 FAMCTRCGACTVACPKGALSLVDMDKVVDGEVVKRKRVQYNPALCDQCGDCIEACPYDML 381 Query: 119 VEGPN 123 Sbjct: 382 KLTDE 386 Score = 42.4 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 1/63 (1%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C+ C+ C ICP I +E I + C+ CG+C CPVDAI Sbjct: 104 QGFCVMCQKCVDICPVGVIGVEGIKEPAKVELEIEGP-IFIADCVGCGMCVPECPVDAIT 162 Query: 120 EGP 122 Sbjct: 163 LDK 165 Score = 40.9 bits (94), Expect = 0.058, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 9/60 (15%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C+ C +C CP AIT++ + +ID CI CG+C + CP +A+ Sbjct: 145 DCVGCGMCVPECPVDAITLD---------KVGGVIEIDEDTCIKCGVCAQTCPWNAVYIS 195 Score = 37.8 bits (86), Expect = 0.51, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 23/65 (35%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 EE+C C ICP AI + + V + C CG C ACP A Sbjct: 280 WDEEKCDFIGACANICPNDAIRVVTKEGMKVPDNEKVDEEPSFAMCTRCGACTVACPKGA 339 Query: 118 IVEGP 122 + Sbjct: 340 LSLVD 344 Score = 35.8 bits (81), Expect = 1.7, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 24/66 (36%), Gaps = 4/66 (6%) Query: 52 ALRRYPNGEERCIACK---LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 A+ P C C C ICP A+ +E G R + KC CG Sbjct: 23 AIEVTPEDVIYCDICGGEPKCVDICPTGALKLEDLVVDEAGNT-QGRIVFNPDKCNECGD 81 Query: 109 CQEACP 114 C E CP Sbjct: 82 CVEVCP 87 Score = 35.1 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 17/64 (26%), Gaps = 12/64 (18%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 C C C CP + + G CI C C ACP Sbjct: 360 QYNPALCDQCGDCIEACPYDMLKLTDEKVPLKGF------------CILCDQCIPACPKG 407 Query: 117 AIVE 120 A+ Sbjct: 408 ALSL 411 Score = 34.7 bits (78), Expect = 4.2, Method: Composition-based stats. Identities = 11/23 (47%), Positives = 11/23 (47%) Query: 101 IKCIYCGLCQEACPVDAIVEGPN 123 CI CG CQ CP AI P Sbjct: 7 EDCIRCGACQGTCPTAAIEVTPE 29 Score = 34.3 bits (77), Expect = 5.5, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 9/70 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++C C C +CP Q + ++ G C+ C C + CPV I Sbjct: 72 NPDKCNECGDCVEVCPPQILKLDEGKVKKVPL---------QGFCVMCQKCVDICPVGVI 122 Query: 119 VEGPNFEFAT 128 E A Sbjct: 123 GVEGIKEPAK 132 >gi|189466701|ref|ZP_03015486.1| hypothetical protein BACINT_03076 [Bacteroides intestinalis DSM 17393] gi|189434965|gb|EDV03950.1| hypothetical protein BACINT_03076 [Bacteroides intestinalis DSM 17393] Length = 597 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 6/65 (9%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + + C C C +C AIT ++ ++D KC CGLC++ C Sbjct: 1 MIDISDKAMCCGCNACGDVCAHDAITFKTDIEGFWYP------EVDKSKCTDCGLCEKVC 54 Query: 114 PVDAI 118 P+ I Sbjct: 55 PIINI 59 >gi|153853797|ref|ZP_01995153.1| hypothetical protein DORLON_01144 [Dorea longicatena DSM 13814] gi|149753547|gb|EDM63478.1| hypothetical protein DORLON_01144 [Dorea longicatena DSM 13814] Length = 1180 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 23/91 (25%), Gaps = 18/91 (19%) Query: 58 NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRYDIDMIKC 103 E CI C C +CP +A + C Sbjct: 688 WQSENCIQCNRCAYVCPHAVIRPVALTEDELAKAPEGTKAIDMIGMPGMKFTMTVSAYDC 747 Query: 104 IYCGLCQEACP----VDAIVEGPNFEFATET 130 CG C CP A+V E A E Sbjct: 748 TGCGSCVNVCPGKKGEKALVMANMEENAAEQ 778 >gi|56751562|ref|YP_172263.1| bidirectional hydrogenase complex protein HoxU [Synechococcus elongatus PCC 6301] gi|56686521|dbj|BAD79743.1| NAD-reducing hydrogenase HoxS gamma subunit [Synechococcus elongatus PCC 6301] Length = 249 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 23/74 (31%), Gaps = 4/74 (5%) Query: 54 RRYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLC 109 R + RCI C C +C A + R + C CG C Sbjct: 150 RFFGLDHNRCILCTRCVRVCDEIEGAHVWDVAMRGEHCRIVAGMDQPWGAVDACTNCGKC 209 Query: 110 QEACPVDAIVEGPN 123 +ACP A+ Sbjct: 210 IDACPTGALFHKGE 223 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 8/82 (9%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIAC---KLCEAICPAQAITIESGPRCHDGTRR---- 92 + R+R + + G C C CE A A+ ++ + +R Sbjct: 88 RSPRLERYRRQIVELFFAEGNHVCAICVANGNCELQDAAIAVGMDHSRYPYRFPKRDVDL 147 Query: 93 -TVRYDIDMIKCIYCGLCQEAC 113 + +D +CI C C C Sbjct: 148 SHRFFGLDHNRCILCTRCVRVC 169 >gi|219670117|ref|YP_002460552.1| nitrite and sulphite reductase 4Fe-4S region [Desulfitobacterium hafniense DCB-2] gi|219540377|gb|ACL22116.1| nitrite and sulphite reductase 4Fe-4S region [Desulfitobacterium hafniense DCB-2] Length = 290 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 9/80 (11%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G R +++CI C LC+A+CPA+AI + R+ +D C YCG Sbjct: 152 GIKGGVRPSWQQDQCIYCGLCQAVCPAKAIEV---------HRQEETLSLDSQLCTYCGK 202 Query: 109 CQEACPVDAIVEGPNFEFAT 128 C ++CP A F + Sbjct: 203 CVKSCPTSAWEGERGFLLSF 222 Score = 40.5 bits (93), Expect = 0.082, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 3/53 (5%) Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 C + E G R +CIYCGLCQ CP AI E Sbjct: 139 CGNNCLKAEENDLGIKGGVRPSWQQ---DQCIYCGLCQAVCPAKAIEVHRQEE 188 >gi|319642705|ref|ZP_07997350.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 3_1_40A] gi|317385678|gb|EFV66612.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 3_1_40A] Length = 377 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 8/77 (10%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP--VDAIVEG 121 + C C IC AI++ + I+ CI CG C+ CP I Sbjct: 1 MGCWACCNICSKNAISMIEDK------FGFLHPQINHNLCIDCGACRTVCPNNTLPIFHI 54 Query: 122 PNFEFATETRQELYYDK 138 +A ++ + Y K Sbjct: 55 EMSTYAAVSKNDDIYKK 71 >gi|311278870|ref|YP_003941101.1| dihydroorotate dehydrogenase family protein [Enterobacter cloacae SCF1] gi|308748065|gb|ADO47817.1| dihydroorotate dehydrogenase family protein [Enterobacter cloacae SCF1] Length = 411 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 23/84 (27%), Gaps = 12/84 (14%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICP---AQAITIESGPRCHDGTRRTVRYDID 99 + ++C+ C C C QA+ R Sbjct: 324 VPAEELDRSYIVYPQIHLDKCVGCGRCYISCYDGGHQAMEWNEDTRTPHCN--------- 374 Query: 100 MIKCIYCGLCQEACPVDAIVEGPN 123 KC+ C LC CPV I G Sbjct: 375 TEKCVGCLLCGHVCPVACISLGNI 398 >gi|307596266|ref|YP_003902583.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Vulcanisaeta distributa DSM 14429] gi|307551467|gb|ADN51532.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Vulcanisaeta distributa DSM 14429] Length = 445 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 7/98 (7%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 + T+ + + +C C +C A CP +A + ++ Sbjct: 292 RPRTTGVANELLKIFSVHVDDVKCSFCGVCFAKCPERAFDVGRDGNK-------TVLKLN 344 Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 +KCI CG C CP AI EF ++ YD Sbjct: 345 NLKCIGCGYCARLCPEKAITVDRAKEFPMSDSTDVVYD 382 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 23/55 (41%), Gaps = 11/55 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C CPA AI+I + R I+ CI CGLC CP A+ Sbjct: 116 CGECVNACPANAISIVNN-----------RVTINESACIECGLCVSRCPTGALAM 159 >gi|300175205|emb|CBK20516.2| unnamed protein product [Blastocystis hominis] Length = 1769 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 37/114 (32%), Gaps = 29/114 (25%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTR------------RT 93 A+ ++CI C C +CP I T E + +G + Sbjct: 680 IAIMNPEWQIDKCIQCNQCATVCPHACIRPVLLTEEEAAKAPEGFKTLKATGGGALNNMR 739 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGP------------NFEFATETRQELY 135 R + + C C LC EAC DA+V + ++ +L Sbjct: 740 FRIQVSPLDCTGCQLCVEACGDDALVMKDFEVMKTQEAANWEYAMTVPSKGDLV 793 >gi|300175052|emb|CBK20363.2| unnamed protein product [Blastocystis hominis] Length = 1769 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 37/114 (32%), Gaps = 29/114 (25%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTR------------RT 93 A+ ++CI C C +CP I T E + +G + Sbjct: 680 IAIMNPEWQIDKCIQCNQCATVCPHACIRPVLLTEEEAAKAPEGFKTLKATGGGALNNMR 739 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGP------------NFEFATETRQELY 135 R + + C C LC EAC DA+V + ++ +L Sbjct: 740 FRIQVSPLDCTGCQLCVEACGDDALVMKDFEVMKTQEAANWEYAMTVPSKGDLV 793 >gi|300123844|emb|CBK25115.2| Pyruvate:NADP+ Oxidoreductase (PNO) [Blastocystis hominis] Length = 1767 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 37/114 (32%), Gaps = 29/114 (25%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTR------------RT 93 A+ ++CI C C +CP I T E + +G + Sbjct: 680 IAIMNPEWQIDKCIQCNQCATVCPHACIRPVLLTEEEAAKAPEGFKTLKATGGGALNNMR 739 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGP------------NFEFATETRQELY 135 R + + C C LC EAC DA+V + ++ +L Sbjct: 740 FRIQVSPLDCTGCQLCVEACGDDALVMKDFEVMKTQEAANWEYAMTVPSKGDLV 793 >gi|257058012|ref|YP_003135900.1| bidirectional hydrogenase complex protein HoxU [Cyanothece sp. PCC 8802] gi|256588178|gb|ACU99064.1| ferredoxin [Cyanothece sp. PCC 8802] Length = 238 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 28/89 (31%), Gaps = 12/89 (13%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRR 92 +P K S G RCI C C +C A + R + Sbjct: 128 QFPDRKIDVSHPQFG--------IDHNRCILCTRCVRVCDEIEGAHVWDVANRGGNSFIV 179 Query: 93 TVRYDID--MIKCIYCGLCQEACPVDAIV 119 + + C CG C EACP AI Sbjct: 180 SGINQPWGDVDACTSCGKCVEACPTGAIF 208 >gi|154150131|ref|YP_001403749.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Candidatus Methanoregula boonei 6A8] gi|153998683|gb|ABS55106.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Methanoregula boonei 6A8] Length = 694 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 29/80 (36%), Gaps = 9/80 (11%) Query: 45 PRFRGEHALRRYP--NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 P GE L Y EE+C C +C +CP A+++ + K Sbjct: 603 PIHMGEVELEPYFAMCIEEKCAGCGMCVNLCPYSALSLVEKD-------GRTVMQVTEAK 655 Query: 103 CIYCGLCQEACPVDAIVEGP 122 C CG C CP AI Sbjct: 656 CKGCGTCGGFCPGGAIWMQH 675 Score = 34.3 bits (77), Expect = 5.1, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 17/50 (34%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 C + + + + + Y ID C+ CGLC AC Sbjct: 291 TVCPVVKPNEFEIGMKPRKAIYINHPQVVPLIYTIDFNTCVKCGLCVTAC 340 >gi|27228287|gb|AAN85594.1| trichloroethene reductive dehalogenase [bacterium RC-VC2] Length = 554 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 3/60 (5%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID---MIKCIYCGLCQEACPVD 116 E C C +C CP QAI+ E Y+ KC C +C+ CP Sbjct: 434 REFCKTCGICAEHCPTQAISHEGPRYDSPHWDCVSGYEGWHLDYHKCTNCTICEAVCPFF 493 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%) Query: 103 CIYCGLCQEACPVDAI-VEGPNFE 125 C CG+C E CP AI EGP ++ Sbjct: 437 CKTCGICAEHCPTQAISHEGPRYD 460 >gi|313905838|ref|ZP_07839196.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Eubacterium cellulosolvens 6] gi|313469352|gb|EFR64696.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Eubacterium cellulosolvens 6] Length = 1181 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 23/93 (24%), Gaps = 19/93 (20%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQ--------------AITIESGPRCHDGTRRT 93 RG N + CI C C +CP A Sbjct: 680 RGIAVNVPVWN-SDNCIQCNRCSYVCPHAVIRPFALTPAEVDAAPEGFKSMDMTGMPEYK 738 Query: 94 VRYDIDMIKCIYCGLCQEACP----VDAIVEGP 122 I + C CG C CP A+ P Sbjct: 739 FSMQISTLDCTGCGSCANVCPGKKGEKALTMVP 771 >gi|312879496|ref|ZP_07739296.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Aminomonas paucivorans DSM 12260] gi|310782787|gb|EFQ23185.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Aminomonas paucivorans DSM 12260] Length = 1175 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 23/79 (29%), Gaps = 16/79 (20%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQA----------------ITIESGPRCHDGTRRTVR 95 A+ CI C C +CP A + + D Sbjct: 675 AIDIPVWDPATCIQCGKCSLVCPHAAIRAKVYDPKLLEGAPATFKSTDAKWKDFPGMKFT 734 Query: 96 YDIDMIKCIYCGLCQEACP 114 + CI CGLC + CP Sbjct: 735 VQVAPEDCIGCGLCVQNCP 753 Score = 35.1 bits (79), Expect = 3.8, Method: Composition-based stats. Identities = 9/19 (47%), Positives = 9/19 (47%) Query: 100 MIKCIYCGLCQEACPVDAI 118 CI CG C CP AI Sbjct: 683 PATCIQCGKCSLVCPHAAI 701 >gi|301064440|ref|ZP_07204859.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] gi|300441450|gb|EFK05796.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] Length = 235 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 11/62 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C+ C C +A+ +E I+ +CI CGLC CP DA+ Sbjct: 142 DTETCIGCETCLERCQMEALRMEDD-----------HAVINRDRCIGCGLCVSTCPSDAL 190 Query: 119 VE 120 Sbjct: 191 HM 192 >gi|296132462|ref|YP_003639709.1| formate dehydrogenase, alpha subunit [Thermincola sp. JR] gi|296031040|gb|ADG81808.1| formate dehydrogenase, alpha subunit [Thermincola potens JR] Length = 894 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLCQE 111 +CI C C +C Q I GT+ +D+ +C+ CG C Sbjct: 138 CIERDMNKCIRCGKCVRVCSEIQGRHIVDFSSRGFGTKIATFFDMPLGQSECVTCGSCVA 197 Query: 112 ACPVDAIVE 120 CP A+ E Sbjct: 198 VCPTGALTE 206 Score = 38.9 bits (89), Expect = 0.22, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 26/89 (29%), Gaps = 10/89 (11%) Query: 48 RGEHALRRYPNGEERCIAC---KLC-----EAICPAQAITIESGPRCHDGTRRTVRYDID 99 R N E C+ C C + + + R + D Sbjct: 83 RKMIIELLLANHPEDCMTCQKFGNCKLADYAYLYGVRKSSFAGEKRSEPVDTSNPCIERD 142 Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 M KCI CG C C I +F++ Sbjct: 143 MNKCIRCGKCVRVC--SEIQGRHIVDFSS 169 >gi|288935201|ref|YP_003439260.1| electron transport complex, RnfABCDGE type, C subunit [Klebsiella variicola At-22] gi|288889910|gb|ADC58228.1| electron transport complex, RnfABCDGE type, C subunit [Klebsiella variicola At-22] Length = 719 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 40/112 (35%), Gaps = 13/112 (11%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEKGCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHNLADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 I F E + ++E +R R+E+ R + + R Sbjct: 429 NIPLVQYFRQEKAEISAIRQEE-----QRAAEAKARFEARQAR-LEREKAAR 474 >gi|284162170|ref|YP_003400793.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Archaeoglobus profundus DSM 5631] gi|284012167|gb|ADB58120.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Archaeoglobus profundus DSM 5631] Length = 655 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 26/80 (32%), Positives = 34/80 (42%), Gaps = 12/80 (15%) Query: 43 TSPRFRGEHAL--RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100 S RG L EE+C C +C +CP QAI I+ R ID Sbjct: 569 LSMIDRGYIELEPTTAYVDEEKCSGCGICIPLCPFQAIEIDERKRAK----------IDE 618 Query: 101 IKCIYCGLCQEACPVDAIVE 120 + C+ CG+C +CP AI Sbjct: 619 LLCMGCGVCASSCPSRAIKH 638 >gi|206900598|ref|YP_002250293.1| Fe-hydrogenase beta subunit [Dictyoglomus thermophilum H-6-12] gi|206739701|gb|ACI18759.1| Fe-hydrogenase beta subunit [Dictyoglomus thermophilum H-6-12] Length = 624 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 29/67 (43%), Gaps = 10/67 (14%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 A ++Y E C C LC CP AI+ E G Y ID KC CG+C E Sbjct: 565 AFKKYVINPELCKGCGLCARSCPQSAISGERGKP----------YVIDQEKCAKCGICVE 614 Query: 112 ACPVDAI 118 C AI Sbjct: 615 KCKFKAI 621 Score = 40.5 bits (93), Expect = 0.076, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 15/39 (38%) Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 G +Y I+ C CGLC +CP AI Sbjct: 553 HIEGICPSGMCTAFKKYVINPELCKGCGLCARSCPQSAI 591 >gi|206575962|ref|YP_002238213.1| electron transport complex, RnfABCDGE type, C subunit [Klebsiella pneumoniae 342] gi|226735447|sp|B5XWP9|RNFC_KLEP3 RecName: Full=Electron transport complex protein rnfC; AltName: Full=Nitrogen fixation protein rnfC gi|206565020|gb|ACI06796.1| electron transport complex, RnfABCDGE type, C subunit [Klebsiella pneumoniae 342] Length = 753 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 40/112 (35%), Gaps = 13/112 (11%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEKGCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHNLADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 I F E + ++E +R R+E+ R + + R Sbjct: 429 NIPLVQYFRQEKAEISAIRQEE-----QRAAEAKARFEARQAR-LEREKAAR 474 >gi|156937202|ref|YP_001434998.1| ferredoxin-dependent glutamate synthase [Ignicoccus hospitalis KIN4/I] gi|156566186|gb|ABU81591.1| ferredoxin-dependent glutamate synthase [Ignicoccus hospitalis KIN4/I] Length = 717 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 26/91 (28%), Gaps = 16/91 (17%) Query: 34 INYPFEKGSTSPRFRGEHALRRY------PNGEERCIACKLCEAICPAQAITIESGPRCH 87 + P G A++ + CI C C +CP I ++ Sbjct: 208 VITPKSLRPVYKASGGVPAMKNLMPKYRVEFKYDICIGCGTCAMVCPENVIKMKGYKPVA 267 Query: 88 DGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C C CP DA+ Sbjct: 268 A----------READCIGCYACVNYCPTDAV 288 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 4/39 (10%) Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + R +YDI CI CG C CP + I Sbjct: 226 AMKNLMPKYRVEFKYDI----CIGCGTCAMVCPENVIKM 260 >gi|153852617|ref|ZP_01994054.1| hypothetical protein DORLON_00027 [Dorea longicatena DSM 13814] gi|149754259|gb|EDM64190.1| hypothetical protein DORLON_00027 [Dorea longicatena DSM 13814] Length = 607 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 28/65 (43%), Gaps = 11/65 (16%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++CI CK C AI + +G ID C CGLC + CPV AI Sbjct: 554 DKCIGCKKCIKELGCPAIVLNNG-----------NVCIDSSMCTGCGLCSQVCPVTAITG 602 Query: 121 GPNFE 125 G + E Sbjct: 603 GEDHE 607 >gi|189424747|ref|YP_001951924.1| cobyrinic acid ac-diamide synthase [Geobacter lovleyi SZ] gi|189421006|gb|ACD95404.1| Cobyrinic acid ac-diamide synthase [Geobacter lovleyi SZ] Length = 292 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 11/63 (17%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 ++ C C +C C AI E + Y ID + C CG+C CPV AI Sbjct: 70 QQDCTGCGICMDSCRFDAIRRED-----------ISYRIDPVACEGCGVCYRLCPVKAID 118 Query: 120 EGP 122 Sbjct: 119 FPD 121 Score = 33.9 bits (76), Expect = 7.5, Method: Composition-based stats. Identities = 9/26 (34%), Positives = 12/26 (46%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPN 123 I C CG+C ++C DAI Sbjct: 68 IRQQDCTGCGICMDSCRFDAIRREDI 93 >gi|149734|gb|AAB02352.1| mvhB [Methanothermobacter thermautotrophicus] Length = 412 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ CI C +C CP A+ SG + + ++++D CI C C EACP D I Sbjct: 173 DEDTCIKCGVCAQTCPWNAVY-ISGRKPEKRAKEIKKFELDEDACIGCNTCVEACPGDFI 231 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 1/65 (1%) Query: 60 EERCIACKLCEAICPAQAIT-IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C C CP A++ ++ + R + C CG C EACP D + Sbjct: 322 FAMCTRCGACTVACPKGALSLVDMDKVVDGEVVKRKRVQYNPALCDQCGDCIEACPYDML 381 Query: 119 VEGPN 123 Sbjct: 382 KLTDE 386 Score = 42.4 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 1/80 (1%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + + A + + C+ C+ C ICP I +E I + Sbjct: 87 PPQILKLDEAKVKKVPLQGFCVMCQKCVDICPVGVIGVEGIKEPAKVELEIEGP-IFIAD 145 Query: 103 CIYCGLCQEACPVDAIVEGP 122 C+ CG+C CPVDAI Sbjct: 146 CVGCGMCVPECPVDAITLDK 165 Score = 40.9 bits (94), Expect = 0.060, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 9/60 (15%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C+ C +C CP AIT++ + +ID CI CG+C + CP +A+ Sbjct: 145 DCVGCGMCVPECPVDAITLD---------KVGGVIEIDEDTCIKCGVCAQTCPWNAVYIS 195 Score = 37.8 bits (86), Expect = 0.52, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 23/65 (35%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 EE+C C ICP AI + + V + C CG C ACP A Sbjct: 280 WDEEKCDFIGACANICPNDAIRVVTKEGMKVPDNEKVDEEPSFAMCTRCGACTVACPKGA 339 Query: 118 IVEGP 122 + Sbjct: 340 LSLVD 344 Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 24/66 (36%), Gaps = 4/66 (6%) Query: 52 ALRRYPNGEERCIACK---LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 A+ P C C C ICP A+ +E G R + KC CG Sbjct: 23 AIEVTPEDVIYCDICGGEPKCVDICPTGALKLEDLVVDEAGNT-QGRIVFNPDKCNECGD 81 Query: 109 CQEACP 114 C E CP Sbjct: 82 CVEVCP 87 Score = 35.1 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 17/64 (26%), Gaps = 12/64 (18%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 C C C CP + + G CI C C ACP Sbjct: 360 QYNPALCDQCGDCIEACPYDMLKLTDEKVPLKGF------------CILCDQCIPACPKG 407 Query: 117 AIVE 120 A+ Sbjct: 408 ALSL 411 Score = 34.7 bits (78), Expect = 4.2, Method: Composition-based stats. Identities = 11/23 (47%), Positives = 11/23 (47%) Query: 101 IKCIYCGLCQEACPVDAIVEGPN 123 CI CG CQ CP AI P Sbjct: 7 EDCIRCGACQGTCPTAAIEVTPE 29 Score = 33.9 bits (76), Expect = 6.6, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 9/70 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++C C C +CP Q + ++ C+ C C + CPV I Sbjct: 72 NPDKCNECGDCVEVCPPQILKLDEAKVKKVPL---------QGFCVMCQKCVDICPVGVI 122 Query: 119 VEGPNFEFAT 128 E A Sbjct: 123 GVEGIKEPAK 132 >gi|27228281|gb|AAN85590.1| trichloroethene reductive dehalogenase [bacterium YK-TCE1] Length = 554 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 21/60 (35%), Gaps = 3/60 (5%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID---MIKCIYCGLCQEACPVD 116 E C C +C CP QAI+ E Y+ KC C C+ CP Sbjct: 434 REFCKTCGICAEHCPTQAISHEGPRYDSPHWDCVSGYEGWHLDYHKCTNCTNCEAVCPFF 493 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%) Query: 103 CIYCGLCQEACPVDAI-VEGPNFE 125 C CG+C E CP AI EGP ++ Sbjct: 437 CKTCGICAEHCPTQAISHEGPRYD 460 >gi|88859826|ref|ZP_01134465.1| electron transport complex protein RnfB [Pseudoalteromonas tunicata D2] gi|88817820|gb|EAR27636.1| electron transport complex protein RnfB [Pseudoalteromonas tunicata D2] Length = 184 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 35/96 (36%), Gaps = 10/96 (10%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E + E + E+ CI C C CP AI + + + Sbjct: 90 EAKPLAGGEAKEPIKKVAYIREDECIGCTKCIQACPVDAIIGATRQ----------MHTV 139 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134 + +C C LC E CPVD I P E + + +L Sbjct: 140 LIDECTGCDLCVEPCPVDCIDMLPVQETSQNWKWQL 175 >gi|302340131|ref|YP_003805337.1| Fe-S cluster domain protein [Spirochaeta smaragdinae DSM 11293] gi|301637316|gb|ADK82743.1| Fe-S cluster domain protein [Spirochaeta smaragdinae DSM 11293] Length = 447 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 12/65 (18%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI-VE 120 +CI C C CP +AI + G +D +C+ CG C CPVDAI +E Sbjct: 16 KCIGCTHCMLTCPTEAIRVFGGKAH-----------VDPNRCVDCGNCMSVCPVDAIVIE 64 Query: 121 GPNFE 125 +F+ Sbjct: 65 QDDFD 69 Score = 34.7 bits (78), Expect = 4.7, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 11/21 (52%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 I KCI C C CP +AI Sbjct: 12 IVEAKCIGCTHCMLTCPTEAI 32 >gi|242027232|gb|ACS75683.1| hydrogenase I [Clostridium sp. IBUN 13A] Length = 385 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 3/78 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPV 115 +C+ C C A C + T R+ + D C+ CG C ACPV Sbjct: 59 DRSKCVLCGRCVAACKEKTGTGNIEIAGKGPDRKVQAIEGKCFDETNCLLCGQCVAACPV 118 Query: 116 DAIVEGPNFEFATETRQE 133 A+ E P+ + E ++ Sbjct: 119 AALNEKPHIDRVKEALED 136 >gi|164612837|gb|ABY63664.1| [FeFe] hydrogenase [Clostridium butyricum] Length = 574 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 3/78 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPV 115 +C+ C C A C + T R+ + D C+ CG C ACPV Sbjct: 143 DRSKCVLCGRCVAACKEKTGTGNIEISGKGPDRKVQAIEGKCFDETNCLLCGQCVAACPV 202 Query: 116 DAIVEGPNFEFATETRQE 133 A+ E P+ + E ++ Sbjct: 203 AALNEKPHIDRVKEALED 220 >gi|149191143|ref|ZP_01869401.1| putative formate dehydrogenase, alphasubunit [Vibrio shilonii AK1] gi|148834981|gb|EDL51960.1| putative formate dehydrogenase, alphasubunit [Vibrio shilonii AK1] Length = 1371 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 1/61 (1%) Query: 59 GEERCIACKLCEAICPAQAITIE-SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 RCI+C C C +++ + + C+ CG C + CP A Sbjct: 614 DANRCISCGSCVHACQTESVHGILNFSETSHRPSFPNGATMGDSNCVQCGACVQVCPTGA 673 Query: 118 I 118 + Sbjct: 674 L 674 Score = 35.1 bits (79), Expect = 3.6, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 4/50 (8%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G+ C+ C C +CP A++ + T I C YCG+ Sbjct: 655 GDSNCVQCGACVQVCPTGALSDKRDKSHGRIEMLTPVKTI----CTYCGV 700 >gi|152988215|ref|YP_001347022.1| electron transport complex protein RnfC [Pseudomonas aeruginosa PA7] gi|150963373|gb|ABR85398.1| electron transport complex protein RnfC [Pseudomonas aeruginosa PA7] Length = 776 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 2/93 (2%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 CI C C +CPA + + G + CI CG C CP I Sbjct: 368 PCIRCGDCAQVCPAS-LLPQQLHFFALGGEHEQLLAHHLFDCIECGACAYICP-SDIPLV 425 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVR 154 + + +E + + +R+E R Sbjct: 426 QYYRASKAQIREQRQKLRKAEQSRERFEQRQAR 458 >gi|77918234|ref|YP_356049.1| putative iron-sulfur cluster-like protein [Pelobacter carbinolicus DSM 2380] gi|77544317|gb|ABA87879.1| putative iron-sulfur cluster-like protein [Pelobacter carbinolicus DSM 2380] Length = 398 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 11/60 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C LC CP QA+ + + R ID +CI+C CQE CP A+ Sbjct: 314 DPQLCRHCGLCVKHCPPQAMVL-----------KHGRLHIDYRRCIHCFCCQELCPYGAL 362 >gi|332296989|ref|YP_004438911.1| NADH dehydrogenase (quinone) [Treponema brennaborense DSM 12168] gi|332180092|gb|AEE15780.1| NADH dehydrogenase (quinone) [Treponema brennaborense DSM 12168] Length = 593 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 10/58 (17%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+CI C C CPA IT E R + I+ KC+ CG C+ C +AI Sbjct: 543 EKCIGCGACARQCPANCITGEKKMR----------HTIEQSKCLKCGACETTCKFNAI 590 >gi|307108270|gb|EFN56510.1| hypothetical protein CHLNCDRAFT_34957 [Chlorella variabilis] Length = 677 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 25/69 (36%), Gaps = 3/69 (4%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPV 115 E+CI C C +C G +D KCI CG C CPV Sbjct: 185 DLEKCIKCGRCVTMCGQVQQMNVLGMINRSRMAHPGVLIEEALDHSKCIECGQCSSVCPV 244 Query: 116 DAIVEGPNF 124 AIVE + Sbjct: 245 GAIVEHSEW 253 >gi|326791477|ref|YP_004309298.1| PAS/PAC sensor protein [Clostridium lentocellum DSM 5427] gi|326542241|gb|ADZ84100.1| putative PAS/PAC sensor protein [Clostridium lentocellum DSM 5427] Length = 569 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 11/73 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + + C C C CP AI +++ I +CI CG C + Sbjct: 1 MWIIDFFKSNCKNCYACVRACPVNAIQVQAEQA-----------KIVKERCIGCGKCLKV 49 Query: 113 CPVDAIVEGPNFE 125 CP +A E Sbjct: 50 CPKNAKHVQSELE 62 >gi|282855243|ref|ZP_06264575.1| 4Fe-4S binding domain protein [Propionibacterium acnes J139] gi|282581831|gb|EFB87216.1| 4Fe-4S binding domain protein [Propionibacterium acnes J139] gi|314924057|gb|EFS87888.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL001PA1] gi|314965028|gb|EFT09127.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL082PA2] gi|314983104|gb|EFT27196.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL110PA3] gi|315090647|gb|EFT62623.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL110PA4] gi|315093839|gb|EFT65815.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL060PA1] gi|315104057|gb|EFT76033.1| 4Fe-4S binding domain protein [Propionibacterium acnes HL050PA2] gi|327326470|gb|EGE68259.1| NADH dehydrogenase subunit [Propionibacterium acnes HL103PA1] Length = 102 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 8/85 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV--------RYDIDMIKCIYCGLCQ 110 + C +C +C CPA ITI++ + ID C+YCG+C Sbjct: 9 DVDACTSCMICARECPAWCITIDAHHEAVPDCDVRRPRTVAVLDEFAIDWGLCMYCGMCI 68 Query: 111 EACPVDAIVEGPNFEFATETRQELY 135 E+CP D + + +R +L Sbjct: 69 ESCPFDVLSWSDKCVPESSSRTDLV 93 >gi|322421176|ref|YP_004200399.1| molybdopterin oxidoreductase [Geobacter sp. M18] gi|320127563|gb|ADW15123.1| molybdopterin oxidoreductase [Geobacter sp. M18] Length = 822 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 22/66 (33%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + RCI C+ C + D + C +CG C ACP Sbjct: 140 ESDPNRCILCEKCVKVDHEIVGCDAIEVVNKGEDAIIDTVDGKPLNCEFCGNCVAACPTG 199 Query: 117 AIVEGP 122 A++ P Sbjct: 200 ALISKP 205 >gi|256422463|ref|YP_003123116.1| dihydropyrimidine dehydrogenase [Chitinophaga pinensis DSM 2588] gi|256037371|gb|ACU60915.1| dihydroorotate dehydrogenase family protein [Chitinophaga pinensis DSM 2588] Length = 422 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 5/71 (7%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + +E+CI C LC C G Y I +C+ C LC+ Sbjct: 331 NYHIVANINQEKCIHCGLCYISCEDG---SHQAINLAYGNPYNT-YSIKEEECVGCNLCK 386 Query: 111 EACPV-DAIVE 120 CPV + I Sbjct: 387 LVCPVDNCITM 397 >gi|254519533|ref|ZP_05131589.1| anaerobic sulfite reductase subunit C [Clostridium sp. 7_2_43FAA] gi|226913282|gb|EEH98483.1| anaerobic sulfite reductase subunit C [Clostridium sp. 7_2_43FAA] Length = 320 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 23/88 (26%), Gaps = 8/88 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + G + ++CI+C C C R Sbjct: 145 CPNDCIKARMHDFGIIGMTEPQFDRDKCISCGACVRAC--------KKKSTAALHPENYR 196 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPN 123 D KCI CG C CP A Sbjct: 197 PVRDHSKCIGCGECVINCPTGAWTRSKE 224 >gi|95931022|ref|ZP_01313750.1| Cobyrinic acid a,c-diamide synthase [Desulfuromonas acetoxidans DSM 684] gi|95132918|gb|EAT14589.1| Cobyrinic acid a,c-diamide synthase [Desulfuromonas acetoxidans DSM 684] Length = 304 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 22/81 (27%), Gaps = 12/81 (14%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 + E+ C C C+ +C G T Y I Sbjct: 47 PQVDHCHEFISGTIAVIDEQGCTQCGECQRLCRFG------------GISATPPYTIQPS 94 Query: 102 KCIYCGLCQEACPVDAIVEGP 122 C CG+C CP I P Sbjct: 95 GCEGCGVCARFCPQQVITMEP 115 >gi|320538845|ref|ZP_08038521.1| putative fused 4Fe-4S ferredoxin-type protein/conserved protein [Serratia symbiotica str. Tucson] gi|320031005|gb|EFW13008.1| putative fused 4Fe-4S ferredoxin-type protein/conserved protein [Serratia symbiotica str. Tucson] Length = 617 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 1/54 (1%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + CI C LC CPA + + G + ++ CI CG C CP Sbjct: 375 QACIRCGLCVDACPAG-LLPQQLYWFSRGKEHDKARNHNLSDCIECGACAFVCP 427 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 9/18 (50%), Positives = 11/18 (61%) Query: 97 DIDMIKCIYCGLCQEACP 114 + CI CGLC +ACP Sbjct: 371 QVPEQACIRCGLCVDACP 388 >gi|15678222|ref|NP_275337.1| glutamate synthase (NADPH), alpha subunit [Methanothermobacter thermautotrophicus str. Delta H] gi|2621238|gb|AAB84700.1| glutamate synthase (NADPH), alpha subunit [Methanothermobacter thermautotrophicus str. Delta H] Length = 499 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 33/117 (28%), Gaps = 15/117 (12%) Query: 31 KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT 90 + E + G E C C C CP I +G Sbjct: 2 PFKVERKEEVCKRNFDRPGCCWYMCDNRDESLCANCYSCYNNCPHDVYEIINGEPVP--- 58 Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDR 147 + C+ C +C+E CP +AI E R+ + LL + Sbjct: 59 -------VRHENCVGCRICEEMCPNNAI----EVNAVPEDRRN-VWSFADLLEIERK 103 >gi|13542226|ref|NP_111914.1| Fe-S oxidoreductase [Thermoplasma volcanium GSS1] gi|14325660|dbj|BAB60563.1| hypohtetical protein [Thermoplasma volcanium GSS1] Length = 659 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 29/93 (31%), Gaps = 15/93 (16%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM-----------IKCI 104 Y C C CE CPA A + PR + + C Sbjct: 291 YRTAAMACTDCGRCERACPAYASGTDLDPRLVVQNVKKLVNTDSELVPVVLTENASWSCT 350 Query: 105 YCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 C C E CPV + F ETR+ L + Sbjct: 351 TCMACVEECPV----LIRPYSFVVETRRNLVME 379 >gi|219667454|ref|YP_002457889.1| NADH dehydrogenase (quinone) [Desulfitobacterium hafniense DCB-2] gi|219537714|gb|ACL19453.1| NADH dehydrogenase (quinone) [Desulfitobacterium hafniense DCB-2] Length = 597 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 38/98 (38%), Gaps = 19/98 (19%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEH--ALRRYPNGEERCIACKLCEAICPAQAITI 80 L+YF FE+ + + R L Y E+C C LC CPA I+ Sbjct: 514 TLKYF-------REEFEEHIHAKKCRAGVCSELLTYSIDAEKCKKCGLCARNCPANCISG 566 Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + Y ID +CI CG C ++C A+ Sbjct: 567 N----------KNTPYVIDGERCIRCGSCMDSCKFGAV 594 Score = 37.0 bits (84), Expect = 0.86, Method: Composition-based stats. Identities = 14/45 (31%), Positives = 17/45 (37%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 I + + Y ID KC CGLC CP + I N Sbjct: 525 HIHAKKCRAGVCSELLTYSIDAEKCKKCGLCARNCPANCISGNKN 569 >gi|319955922|ref|YP_004167185.1| NADH dehydrogenase subunit g [Nitratifractor salsuginis DSM 16511] gi|319418326|gb|ADV45436.1| NADH dehydrogenase subunit G [Nitratifractor salsuginis DSM 16511] Length = 761 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 1/85 (1%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 ++ + ++R CI C+ C C + I ++ G + T+ Sbjct: 129 EQEFAAKDQYRPVQNWGFISYDPSLCIMCEKCVRTC-TEIIGDDALAIETGGYKSTIVAT 187 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 D+ C CG C CPV A+V Sbjct: 188 RDLDDCAQCGECMAVCPVGALVSTD 212 >gi|256810428|ref|YP_003127797.1| archaeoflavoprotein, MJ0208 family [Methanocaldococcus fervens AG86] gi|256793628|gb|ACV24297.1| archaeoflavoprotein, MJ0208 family [Methanocaldococcus fervens AG86] Length = 247 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 11/69 (15%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 Y + +C C C CP AI +R +I + KC+ CG C++ CP Sbjct: 151 PYSVDKSKCKLCLKCIDACPNGAI-----------IKRDGFVEISIHKCLGCGNCKKICP 199 Query: 115 VDAIVEGPN 123 +AIVEG Sbjct: 200 YNAIVEGKE 208 >gi|227498924|ref|ZP_03929063.1| pyruvate ferredoxin oxidoreductase [Acidaminococcus sp. D21] gi|226904375|gb|EEH90293.1| pyruvate ferredoxin oxidoreductase [Acidaminococcus sp. D21] Length = 1169 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 28/88 (31%), Gaps = 16/88 (18%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIE--------------SGPRCHDGTRRTVRY 96 A+ E CI C C +CP AI + R Sbjct: 677 IAINVPEWKIENCIQCNQCSYVCPHAAIRPVLLNDEEVKAAPAEFTTKPAVGAKDLHFRM 736 Query: 97 DIDMIKCIYCGLCQEACP--VDAIVEGP 122 + + C CG C +ACP A+V P Sbjct: 737 MVSPMDCQGCGNCVDACPAKEKALVMMP 764 >gi|206896550|ref|YP_002247823.1| putative pyruvate formate-lyase 3-activating enzyme (PFL-activating enzyme 3) (Formate-C-acetyltransferase-activatingenzyme 3) [Coprothermobacter proteolyticus DSM 5265] gi|206739167|gb|ACI18245.1| putative pyruvate formate-lyase 3-activating enzyme (PFL-activating enzyme 3) (Formate-C-acetyltransferase-activatingenzyme 3) [Coprothermobacter proteolyticus DSM 5265] Length = 306 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 13/81 (16%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RC+ C C+ +CP A+ + G ID +C CG+C CP A Sbjct: 57 RCMRCGTCQEVCPQDALELTQGGVV-----------IDRTQCTRCGVCAHYCPTTAWQMV 105 Query: 122 PNFEFATETRQELYYDKERLL 142 E QEL +K+RL Sbjct: 106 GFTLSVKELMQEL--EKDRLY 124 Score = 37.4 bits (85), Expect = 0.62, Method: Composition-based stats. Identities = 11/46 (23%), Positives = 16/46 (34%) Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 + +G +C+ CG CQE CP DA+ Sbjct: 31 GCPLSCWWCQNPEGISPIPELMHFEFRCMRCGTCQEVCPQDALELT 76 >gi|124486457|ref|YP_001031073.1| hypothetical protein Mlab_1645 [Methanocorpusculum labreanum Z] gi|124363998|gb|ABN07806.1| thiamine pyrophosphate enzyme domain protein TPP-binding protein [Methanocorpusculum labreanum Z] Length = 594 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 26/102 (25%), Gaps = 12/102 (11%) Query: 20 FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79 LR + ++ R RY E C C C Sbjct: 501 LLATLREAKEKPGVKVIIAKQPCVIMNKRLGIKRNRYVVDAEACTKCGAC---LRYGCPA 557 Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 IE+ C CG+C + CP AI G Sbjct: 558 IETDETGAAKI---------TALCTGCGVCADICPTGAIHRG 590 >gi|157370844|ref|YP_001478833.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [Serratia proteamaculans 568] gi|157322608|gb|ABV41705.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Serratia proteamaculans 568] Length = 1177 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 37/142 (26%), Gaps = 33/142 (23%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A + C C C A C Sbjct: 646 MLAGLGDAL------PVSAFPPDGTWPVGTTQWEKRNIAEAIPIWQPDLCTQCNHCVAAC 699 Query: 74 PAQAIT--------IESGP--------RCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI +E+ P + D + + C C LC E CP Sbjct: 700 PHSAIRAKVVQPEAMENAPASLQSLDVKARDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFE-FATET 130 AI P E A E Sbjct: 760 RQDPDIKAINMAPRLEHLAVEK 781 >gi|186476292|ref|YP_001857762.1| dihydropyrimidine dehydrogenase [Burkholderia phymatum STM815] gi|184192751|gb|ACC70716.1| dihydroorotate dehydrogenase family protein [Burkholderia phymatum STM815] Length = 436 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 6/63 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117 + +CI C LC C + ++ R DG R +++ +C+ C LC CPV Sbjct: 341 DQHKCIQCGLCHIACED--TSHQAITREKDGKR---HFEVIDAQCVGCNLCMHVCPVEQC 395 Query: 118 IVE 120 I Sbjct: 396 ITM 398 >gi|110803389|ref|YP_698744.1| anaerobic sulfite reductase, subunit C [Clostridium perfringens SM101] gi|110683890|gb|ABG87260.1| anaerobic sulfite reductase, subunit C [Clostridium perfringens SM101] Length = 326 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 25/88 (28%), Gaps = 8/88 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + G + RC++C C C +A S Sbjct: 147 CPNDCIKARMHDFGIIGMTEPQYERNRCVSCGACVRACKKKATGALSFENFKVVR----- 201 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPN 123 D KCI CG C CP +A Sbjct: 202 ---DGSKCIGCGECVMNCPTNAWTRSKE 226 >gi|84503342|ref|ZP_01001411.1| dihydropyrimidine dehydrogenase [Oceanicola batsensis HTCC2597] gi|84388252|gb|EAQ01203.1| dihydropyrimidine dehydrogenase [Oceanicola batsensis HTCC2597] Length = 434 Score = 47.8 bits (112), Expect = 5e-04, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 8/76 (10%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI C C A C E G +++ +C+ Sbjct: 330 QYLNLNYVTKARIDQDLCIKCGRCYAAC-------EDTSHQAIGMNEGRVFEVIDEECVA 382 Query: 106 CGLCQEACPV-DAIVE 120 C LC CPV D I Sbjct: 383 CNLCVNVCPVEDCITM 398 >gi|281178701|dbj|BAI55031.1| putative transport protein [Escherichia coli SE15] Length = 806 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 40/112 (35%), Gaps = 13/112 (11%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 I F E A ++E +R R+E+ R + + R Sbjct: 429 NIPLVQYFRQEKAEIAAIRQEE-----KRAAEAKARFEARQAR-LEREKTAR 474 >gi|269123084|ref|YP_003305661.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Streptobacillus moniliformis DSM 12112] gi|268314410|gb|ACZ00784.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Streptobacillus moniliformis DSM 12112] Length = 1189 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 30/106 (28%), Gaps = 19/106 (17%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT------- 90 FE G + R E CI C C +CP AI Sbjct: 674 FENGEANFEKRAIAKYIPEWR-PEHCIQCNQCSYVCPHAAIRPFLIDEKELENIPNSMDL 732 Query: 91 ---------RRTVRYDIDMIKCIYCGLCQEACP--VDAIVEGPNFE 125 R R + + C C C E CP A+V P E Sbjct: 733 LNPLGKGLERLRYRIQVSPLDCTGCTACAEVCPARTKALVMRPIEE 778 >gi|223558088|gb|ACM91092.1| proline dehydrogenase alpha subunit [uncultured bacterium Rlip1] Length = 1089 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 28/81 (34%), Gaps = 10/81 (12%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 EK + R + + AC C CP AI+ S I Sbjct: 442 EKPNLPTPERMQLKAFVQADCLYGF-ACNPCSFSCPQGAISKPST---------NSVPTI 491 Query: 99 DMIKCIYCGLCQEACPVDAIV 119 D KCI C LC +CP AI Sbjct: 492 DYDKCIGCMLCVSSCPGLAIF 512 >gi|254166732|ref|ZP_04873586.1| CobQ/CobB/MinD/ParA nucleotide binding domain, putative [Aciduliprofundum boonei T469] gi|289596500|ref|YP_003483196.1| Cobyrinic acid ac-diamide synthase [Aciduliprofundum boonei T469] gi|197624342|gb|EDY36903.1| CobQ/CobB/MinD/ParA nucleotide binding domain, putative [Aciduliprofundum boonei T469] gi|289534287|gb|ADD08634.1| Cobyrinic acid ac-diamide synthase [Aciduliprofundum boonei T469] Length = 292 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 12/63 (19%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DAIV 119 ++CI C +C+ IC +AI IE+G + I C CG C+ CPV DAI+ Sbjct: 67 DKCINCGVCDNICIYEAIYIENGQ-----------HKIKEYLCEGCGACKAVCPVEDAII 115 Query: 120 EGP 122 Sbjct: 116 IDD 118 >gi|160915963|ref|ZP_02078171.1| hypothetical protein EUBDOL_01988 [Eubacterium dolichum DSM 3991] gi|158432439|gb|EDP10728.1| hypothetical protein EUBDOL_01988 [Eubacterium dolichum DSM 3991] Length = 482 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 24/68 (35%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQ 110 ++C C C+ CP AI P ID KCI CG CQ Sbjct: 129 YIDYDKCKECGACKNACPFNAIVETPRPCKLSCPVDAITIGENKLAYIDEEKCINCGACQ 188 Query: 111 EACPVDAI 118 CP AI Sbjct: 189 AKCPFGAI 196 Score = 41.6 bits (96), Expect = 0.033, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 5/65 (7%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDG-----TRRTVRYDIDMIKCIYCGLCQEACPVDA 117 C C + + + R ID KC CG C+ ACP +A Sbjct: 90 CDGCSINKIQVTDNCRKCMAKACVASCKFDAIHIGNERAYIDYDKCKECGACKNACPFNA 149 Query: 118 IVEGP 122 IVE P Sbjct: 150 IVETP 154 >gi|170725299|ref|YP_001759325.1| formate dehydrogenase subunit alpha [Shewanella woodyi ATCC 51908] gi|169810646|gb|ACA85230.1| formate dehydrogenase, alpha subunit [Shewanella woodyi ATCC 51908] Length = 1426 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 24/74 (32%), Gaps = 14/74 (18%) Query: 59 GEERCIACKLCEAIC--------------PAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 RCI+C C IC QA+ + R + C+ Sbjct: 647 DANRCISCGACVDICQQQSGHKAISFTEEHYQALPTQEKNSVRRAPRVGFAATMLDSNCV 706 Query: 105 YCGLCQEACPVDAI 118 CG C + CP A+ Sbjct: 707 QCGNCIQVCPTGAL 720 >gi|53803292|ref|YP_114983.1| formate dehydrogenase subunit alpha [Methylococcus capsulatus str. Bath] gi|53757053|gb|AAU91344.1| formate dehydrogenase, alpha subunit [Methylococcus capsulatus str. Bath] Length = 925 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 8/95 (8%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD--- 97 P R A+ + CI C C C + + + G+ + +D Sbjct: 127 REAPPPDRSNPAI---AVQLDACIQCTRCVRACR-ETQVNDVIGYAYRGSHARIVFDQGD 182 Query: 98 -IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 + + C+ CG C + CP A+ G R Sbjct: 183 PMGLSSCVSCGECVQVCPTGALAPGNGAALLEADR 217 >gi|73668425|ref|YP_304440.1| hypothetical protein Mbar_A0886 [Methanosarcina barkeri str. Fusaro] gi|72395587|gb|AAZ69860.1| hypothetical protein Mbar_A0886 [Methanosarcina barkeri str. Fusaro] Length = 303 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 32/93 (34%), Gaps = 20/93 (21%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+C C LC +C I +E+ D TR CI CG C CP AI Sbjct: 17 DYEKCKTCGLCVKVCKGAPIYLENDKVRIDQTRYFG--------CIGCGHCVAVCPTGAI 68 Query: 119 --------VEGPNFEFATETRQELYYDKERLLN 143 + A E+R E L+ Sbjct: 69 AVEGRDISQTSSIYLPAEESRA----GYEELMA 97 >gi|15922936|ref|NP_378605.1| hypothetical protein ST2600 [Sulfolobus tokodaii str. 7] gi|15623727|dbj|BAB67714.1| 331aa long conserved hypothetical protein [Sulfolobus tokodaii str. 7] Length = 331 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 15/103 (14%) Query: 59 GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 +RC+ C +CE C A+ I ++ R R C CG C+ CP Sbjct: 8 DADRCVGCFMCEKACALAKCIEVDEVDRIAKVVRPW--------DCTGCGACERVCPYSC 59 Query: 118 IV-EGPNFEFATE-----TRQELYYDKERLLNNGDRWESEIVR 154 I+ E + +R Y +K ++ NG+ E+ + Sbjct: 60 IIVISDPTEVSKRAKITVSRVTRYMNKPVIMCNGNERIYEVAK 102 >gi|311694181|gb|ADP97054.1| electron transport complex, RnfABCDGE type, B subunit [marine bacterium HP15] Length = 140 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 27/82 (32%), Gaps = 10/82 (12%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E E R E+ CI C C CP AI + + + Sbjct: 40 EPEPLDAEHGVEQVKRVAVIREDECIGCTKCIQACPVDAILGAAK----------HMHTV 89 Query: 99 DMIKCIYCGLCQEACPVDAIVE 120 +C C LC + CPVD I Sbjct: 90 IESECTGCDLCVDPCPVDCIDM 111 >gi|310767587|gb|ADP12537.1| Electron transport complex protein rnfC [Erwinia sp. Ejp617] Length = 785 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 47/133 (35%), Gaps = 8/133 (6%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 T++ P K + + + E+ CI C C CPA A+ + G Sbjct: 348 TLDVPVVKITNCILAPAASEMGQNA-AEQNCIRCSACADACPA-ALLPQQLYWFSRGGDH 405 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF--EFATETRQELYYDKERLLNNGDRWES 150 ++ CI CG C CP I + E A +L ++ L R+E+ Sbjct: 406 EKARAHNIADCIECGACAYVCP-SNIPLVQYYRQEKAEIQAIDLEAERAALAKT--RFEA 462 Query: 151 EIVRNIVTDSPYR 163 + + + R Sbjct: 463 R-QQRLEREKAAR 474 >gi|291546305|emb|CBL19413.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Ruminococcus sp. SR1/5] Length = 623 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 10/68 (14%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 ALR++ E CI C C CP AI+ + + I+ CI CG C++ Sbjct: 563 ALRQFHINPEFCIGCGKCAKNCPTGAIS----------GKIKHPHVINNDVCIKCGSCKD 612 Query: 112 ACPVDAIV 119 C DAI Sbjct: 613 NCNFDAIY 620 Score = 41.2 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 15/40 (37%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 I ++ I+ CI CG C + CP AI Sbjct: 550 HIVDKKCRAKVCTALRQFHINPEFCIGCGKCAKNCPTGAI 589 >gi|283478477|emb|CAY74393.1| Electron transport complex protein rnfC [Erwinia pyrifoliae DSM 12163] Length = 659 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 47/133 (35%), Gaps = 8/133 (6%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 T++ P K + + + E+ CI C C CPA A+ + G Sbjct: 348 TLDVPVVKITNCILAPAASEMGQNA-AEQNCIRCSACADACPA-ALLPQQLYWFSRGGDH 405 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF--EFATETRQELYYDKERLLNNGDRWES 150 ++ CI CG C CP I + E A +L ++ L R+E+ Sbjct: 406 EKARAHNIADCIECGACAYVCP-SNIPLVQYYRQEKAEIQAIDLEAERAALAKT--RFEA 462 Query: 151 EIVRNIVTDSPYR 163 + + + R Sbjct: 463 R-QQRLEREKAAR 474 >gi|260597797|ref|YP_003210368.1| electron transport complex protein RnfC [Cronobacter turicensis z3032] gi|260216974|emb|CBA30618.1| Electron transport complex protein rnfC [Cronobacter turicensis z3032] Length = 849 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 1/58 (1%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQHCIRCSACADACPAD-LLPQQLYWFSVGQQHDKATAHNLADCIECGACAYVCP 427 >gi|253997322|ref|YP_003049386.1| RnfABCDGE type electron transport complex subunit C [Methylotenera mobilis JLW8] gi|253984001|gb|ACT48859.1| electron transport complex, RnfABCDGE type, C subunit [Methylotenera mobilis JLW8] Length = 637 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 24/76 (31%), Gaps = 2/76 (2%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L P + CI C C CP E R D + CI CG C Sbjct: 377 LFAPPPPAQPCIRCTRCADACPVNLQPQELYWFAKSDNFEKAR-DYKLFDCIECGCCTYV 435 Query: 113 CPVDAIVEGPNFEFAT 128 CP I + +A Sbjct: 436 CP-SNIPLVQYYRYAK 450 >gi|259908517|ref|YP_002648873.1| Electron transport complex protein [Erwinia pyrifoliae Ep1/96] gi|224964139|emb|CAX55646.1| Electron transport complex protein [Erwinia pyrifoliae Ep1/96] Length = 595 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 47/133 (35%), Gaps = 8/133 (6%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 T++ P K + + + E+ CI C C CPA A+ + G Sbjct: 348 TLDVPVVKITNCILAPAASEMGQNA-AEQNCIRCSACADACPA-ALLPQQLYWFSRGGDH 405 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF--EFATETRQELYYDKERLLNNGDRWES 150 ++ CI CG C CP I + E A +L ++ L R+E+ Sbjct: 406 EKARAHNIADCIECGACAYVCP-SNIPLVQYYRQEKAEIQAIDLEAERAALAKT--RFEA 462 Query: 151 EIVRNIVTDSPYR 163 + + + R Sbjct: 463 R-QQRLEREKAAR 474 >gi|167844880|ref|ZP_02470388.1| ferredoxin [Burkholderia pseudomallei B7210] Length = 159 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 26/81 (32%), Gaps = 10/81 (12%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 + E A E+ CI C LC CP AI + I Sbjct: 66 PLNQAHGVERARPVAFIDEQLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVAE 115 Query: 102 KCIYCGLCQEACPVDAIVEGP 122 C C LC CPVD I P Sbjct: 116 LCTGCDLCVPPCPVDCIAMIP 136 >gi|156934161|ref|YP_001438077.1| electron transport complex protein RnfC [Cronobacter sakazakii ATCC BAA-894] gi|166225091|sp|A7MMK9|RNFC_ENTS8 RecName: Full=Electron transport complex protein rnfC gi|156532415|gb|ABU77241.1| hypothetical protein ESA_01988 [Cronobacter sakazakii ATCC BAA-894] Length = 776 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 1/58 (1%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEQHCIRCSACADACPAD-LLPQQLYWFSVGQQHDKATAHNLADCIECGACAYVCP 427 >gi|139439361|ref|ZP_01772802.1| Hypothetical protein COLAER_01821 [Collinsella aerofaciens ATCC 25986] gi|133775140|gb|EBA38960.1| Hypothetical protein COLAER_01821 [Collinsella aerofaciens ATCC 25986] Length = 401 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 3/66 (4%) Query: 61 ERCIACKLCEAICPAQAITIE---SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 E C+ C CE IC AI+ + TR ID +C+ CG C AC D Sbjct: 201 EHCVGCHACEKICAHNAISFDGTRERELASGATRTVHVAAIDHDRCVGCGRCIAACNQDC 260 Query: 118 IVEGPN 123 I G + Sbjct: 261 IKPGYD 266 >gi|313897910|ref|ZP_07831451.1| 4Fe-4S binding domain protein [Clostridium sp. HGF2] gi|312957445|gb|EFR39072.1| 4Fe-4S binding domain protein [Clostridium sp. HGF2] Length = 482 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 6/70 (8%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY------DIDMIKCIYCGL 108 ++C C C+ CP AI P +R ID KCI CG Sbjct: 127 HAFIDYDKCKECGACKNACPFNAIVETQRPCMKSCPVDAIRMGEDGLAKIDEAKCINCGA 186 Query: 109 CQEACPVDAI 118 CQ CP AI Sbjct: 187 CQVKCPFGAI 196 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 24/86 (27%), Gaps = 5/86 (5%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG-----TRRTVR 95 G + E C C + + + Sbjct: 68 GKPPVPVENDKKRHIVRVIEAACDGCSIHKIQVTDNCRKCMAKACLSACKFDAIHMGEDH 127 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEG 121 ID KC CG C+ ACP +AIVE Sbjct: 128 AFIDYDKCKECGACKNACPFNAIVET 153 >gi|311694465|gb|ADP97338.1| formate dehydrogenase, alpha subunit [marine bacterium HP15] Length = 963 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 3/64 (4%) Query: 59 GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115 + CI C LCE C Q + ++ +D M C+ CG C +ACP Sbjct: 178 NLDACITCGLCERACREVQGNDVIGLAHRGAASKVIFDFDDPMGDSTCVACGECVQACPT 237 Query: 116 DAIV 119 A++ Sbjct: 238 GALM 241 >gi|291279991|ref|YP_003496826.1| molybdopterin oxidoreductase molybdopterin-binding subunit [Deferribacter desulfuricans SSM1] gi|290754693|dbj|BAI81070.1| molybdopterin oxidoreductase, molybdopterin-binding subunit [Deferribacter desulfuricans SSM1] Length = 745 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 31/85 (36%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 E ++ + + + C+ C+ C +C A + Sbjct: 126 EESVKSTKPNKPKFDWDMIIHDANLCVLCERCVKVCHEIAGCSALKIEERGFNNLITTVN 185 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 + C +CGLC + CPV A+++ P Sbjct: 186 ESGLDCDFCGLCVDFCPVGALLDKP 210 >gi|260434049|ref|ZP_05788020.1| dihydroorotate dehydrogenase family protein [Silicibacter lacuscaerulensis ITI-1157] gi|260417877|gb|EEX11136.1| dihydroorotate dehydrogenase family protein [Silicibacter lacuscaerulensis ITI-1157] Length = 434 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 8/78 (10%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + +++CI C C A C E +++ +C+ Sbjct: 330 QYLNLNYVAKAKIDQDQCIKCGRCYAAC-------EDTSHQAISMSPDRVFEVIDEECVA 382 Query: 106 CGLCQEACPVD-AIVEGP 122 C LC + CPV+ I P Sbjct: 383 CNLCVDVCPVEGCISMVP 400 >gi|110799819|ref|YP_695522.1| [Fe] hydrogenase [Clostridium perfringens ATCC 13124] gi|110674466|gb|ABG83453.1| [Fe] hydrogenase [Clostridium perfringens ATCC 13124] Length = 696 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 13/88 (14%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 EE+CI C C+ IC ++ D CI CG C CP Sbjct: 21 CRDEEKCIKCGSCKNICTD---------YIGVNGHYSLEKTNDTAVCINCGQCANVCPTS 71 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNN 144 +I E ++ + Q+ DK++++ Sbjct: 72 SITEVFDY----KKVQDAISDKDKIVIV 95 >gi|148257591|ref|YP_001242176.1| putative formate dehydrogenase subunit alpha [Bradyrhizobium sp. BTAi1] gi|146409764|gb|ABQ38270.1| NAD-dependent formate dehydrogenase iron-sulfur protein / NAD-dependent formate dehydrogenase catalytic subunit [Bradyrhizobium sp. BTAi1] Length = 909 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 24/82 (29%), Gaps = 5/82 (6%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD--- 97 G R + CI C LC C G + +D Sbjct: 126 GHRPTIERVTQQHPAITVDLDACIRCGLCRTACQ-DVQVNGVIGVAGRGAEACIVFDANV 184 Query: 98 -IDMIKCIYCGLCQEACPVDAI 118 + C+ CG C + CP A+ Sbjct: 185 PLTDSSCVACGECVQVCPTGAL 206 >gi|330820854|ref|YP_004349716.1| dihydroorotate dehydrogenase family protein [Burkholderia gladioli BSR3] gi|327372849|gb|AEA64204.1| dihydroorotate dehydrogenase family protein [Burkholderia gladioli BSR3] Length = 439 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 6/63 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117 ++RCI C LC C + ++ R DG R +++ +C+ C LC CPV Sbjct: 341 DQDRCIQCGLCHIACED--TSHQAITREKDGQR---HFEVIDAECVGCNLCMHVCPVEQC 395 Query: 118 IVE 120 I Sbjct: 396 ITM 398 >gi|315930988|gb|EFV09963.1| pyruvate synthase [Campylobacter jejuni subsp. jejuni 327] Length = 797 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 29/96 (30%), Gaps = 19/96 (19%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA------------------QAIT 79 FE G+T RG + CI C C ++CP Sbjct: 668 FEHGTTEYEKRGVGVMVPRWIE-ANCIQCNQCASVCPHAVIRPFLINDEEMANAPRGVKD 726 Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 + G + + + + + C C LC CP Sbjct: 727 HALEAKGTKGEKLSFKIQVSPLDCTGCELCVHECPT 762 >gi|296159154|ref|ZP_06841981.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia sp. Ch1-1] gi|295890715|gb|EFG70506.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia sp. Ch1-1] Length = 279 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 23/64 (35%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ CI C LC CP AI + + C C LC CPVD I Sbjct: 85 DEQVCIGCTLCMQACPVDAIVGAPKQ----------MHTVIAELCTGCDLCVPPCPVDCI 134 Query: 119 VEGP 122 P Sbjct: 135 ALPP 138 Score = 37.0 bits (84), Expect = 0.94, Method: Composition-based stats. Identities = 14/21 (66%), Positives = 15/21 (71%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C LC +ACPVDAI Sbjct: 84 IDEQVCIGCTLCMQACPVDAI 104 >gi|259415268|ref|ZP_05739190.1| formate dehydrogenase, alpha subunit [Silicibacter sp. TrichCH4B] gi|259349178|gb|EEW60932.1| formate dehydrogenase, alpha subunit [Silicibacter sp. TrichCH4B] Length = 924 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 5/65 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID----MIKCIYCGLCQEACP 114 + CI+C LC C + + G +DI C+ CG C +ACP Sbjct: 147 NLDACISCGLCVRACR-EVQVNDVIGMAGRGHNAYPTFDIADPMGASSCVACGECVQACP 205 Query: 115 VDAIV 119 A++ Sbjct: 206 TGALM 210 >gi|269122189|ref|YP_003310366.1| hydrogenase, Fe-only [Sebaldella termitidis ATCC 33386] gi|268616067|gb|ACZ10435.1| hydrogenase, Fe-only [Sebaldella termitidis ATCC 33386] Length = 587 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 3/67 (4%) Query: 59 GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115 ++CI C+ CE +C Q + + S + +I++ C YCG C CP Sbjct: 150 DMDKCIMCRRCETMCNEVQTVGVLSAINRGFESVIATAMEINLSDSVCTYCGQCAAVCPT 209 Query: 116 DAIVEGP 122 A+VE Sbjct: 210 GALVEND 216 >gi|258513452|ref|YP_003189674.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfotomaculum acetoxidans DSM 771] gi|257777157|gb|ACV61051.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfotomaculum acetoxidans DSM 771] Length = 1207 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 44/122 (36%), Gaps = 22/122 (18%) Query: 28 FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA------------ 75 FK + +P +T+ RG A R E+CI C C ICP Sbjct: 657 FKGREDGTFPL--STTAYEKRGIAA-RIPQWQPEKCIQCNQCSFICPHAVVRPFLLNEEE 713 Query: 76 --QAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPVDA---IVEGPNFEFAT 128 +A + + ++Y I + C CG C + CP I+ P E A Sbjct: 714 VKKAPSSFITKKATGKGLEGLQYRIQITPLDCTGCGNCADVCPAPGKALIMNDPEEEIAA 773 Query: 129 ET 130 ++ Sbjct: 774 QS 775 >gi|226326078|ref|ZP_03801596.1| hypothetical protein COPCOM_03896 [Coprococcus comes ATCC 27758] gi|225205620|gb|EEG87974.1| hypothetical protein COPCOM_03896 [Coprococcus comes ATCC 27758] Length = 295 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 37/122 (30%), Gaps = 30/122 (24%) Query: 18 GAFFLCLRYFFKAKTTINY-----------PFEKGSTS----PRFRGEHALRRYPNGEER 62 L + F K TI PF K + +L + E+ Sbjct: 180 SGIRAALGHLFTFKFTILVFVIILSILFYRPFCKWICPLGAIYSLFNKISLLKIKVDPEK 239 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C+ C C +++ CI CG C +ACP +AI Sbjct: 240 CVNCQKCSHACKMDVNVVDTPDHPE---------------CIRCGACMKACPTNAICYHY 284 Query: 123 NF 124 F Sbjct: 285 GF 286 >gi|90579150|ref|ZP_01234960.1| electron transport complex protein RnfC [Vibrio angustum S14] gi|90439983|gb|EAS65164.1| electron transport complex protein RnfC [Vibrio angustum S14] Length = 858 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 37/104 (35%), Gaps = 9/104 (8%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C C +CP+ + + + ++ CI CG C CP I Sbjct: 379 CIRCSACADVCPSS-LLPQQLQWYAKDQNYDKCEEYNLKDCIECGACAYVCP-SEIPLVQ 436 Query: 123 NFEFAT---ETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + A R + + ER R+E++ R + D R Sbjct: 437 YYRQAKAEIWARSQDEMNAERARQ---RFEAKQAR-MERDKAER 476 >gi|28210729|ref|NP_781673.1| ferredoxin [Clostridium tetani E88] gi|28203167|gb|AAO35610.1| rnfB/polyferredoxin [Clostridium tetani E88] Length = 290 Score = 47.8 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 31/89 (34%), Gaps = 11/89 (12%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 P K + + + CI+C LC CP +AI + Sbjct: 185 KAVIELTPMSKKVRIACNSHDKGISVKNSCAVGCISCGLCARNCPVEAIEMVDNLPV--- 241 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 I+ KC+ CG+C + CP AI Sbjct: 242 --------INYDKCVQCGICVKKCPTKAI 262 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 23/64 (35%), Gaps = 11/64 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C +C AITIE G ID KC CG C + CP I Sbjct: 140 CSYGCMGLGSCTQVCLFDAITIEDGIAV-----------IDEEKCTGCGACVDICPKAVI 188 Query: 119 VEGP 122 P Sbjct: 189 ELTP 192 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 5/78 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEAC 113 EE+C C C ICP I + + + + + CI CGLC C Sbjct: 169 DEEKCTGCGACVDICPKAVIELTPMSKKVRIACNSHDKGISVKNSCAVGCISCGLCARNC 228 Query: 114 PVDAIVEGPNFEFATETR 131 PV+AI N + Sbjct: 229 PVEAIEMVDNLPVINYDK 246 >gi|282163197|ref|YP_003355582.1| hypothetical protein MCP_0527 [Methanocella paludicola SANAE] gi|282155511|dbj|BAI60599.1| conserved hypothetical protein [Methanocella paludicola SANAE] Length = 294 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 26/84 (30%), Gaps = 17/84 (20%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P K + E C+AC CE C A+++ Sbjct: 48 PEVKEKKPYSGHKFPVV-----DESACVACGACETYCRFNAVSMRE------------HA 90 Query: 97 DIDMIKCIYCGLCQEACPVDAIVE 120 ID C CG+C CP AI Sbjct: 91 AIDPTACEACGVCVAVCPAGAISL 114 >gi|256827391|ref|YP_003151350.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [Cryptobacterium curtum DSM 15641] gi|256583534|gb|ACU94668.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [Cryptobacterium curtum DSM 15641] Length = 1183 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 32/98 (32%), Gaps = 21/98 (21%) Query: 57 PNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRYD--IDM 100 + CI C C +CP A T G + Y + Sbjct: 691 RWDADTCIQCNNCSFVCPHATIRPFALTEAELTGAPTHTKGIPAKGKKAAGLTYVLAVSP 750 Query: 101 IKCIYCGLCQEACPVDAIVEGP-NFEFATETRQELYYD 137 + C+ C +C CP DA+ P E A ++ +D Sbjct: 751 LDCMGCEVCVTQCPTDALSMVPVEEELA----EQAVFD 784 >gi|222099632|ref|YP_002534200.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermotoga neapolitana DSM 4359] gi|221572022|gb|ACM22834.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermotoga neapolitana DSM 4359] Length = 366 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 31/70 (44%), Gaps = 14/70 (20%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E+C+AC C CP AIT+ R ID KCI CG C C A Sbjct: 202 EKCVACGTCAKFCPVGAITVTKVAR------------IDYDKCIGCGQCIAMCSYGA--M 247 Query: 121 GPNFEFATET 130 P ++ +T++ Sbjct: 248 SPKWDSSTDS 257 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 14/36 (38%) Query: 87 HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + + KC+ CG C + CPV AI Sbjct: 188 KMEQHSDSKPYVVEEKCVACGTCAKFCPVGAITVTK 223 >gi|156938044|ref|YP_001435840.1| pyruvate ferredoxin oxidoreductase, delta subunit [Ignicoccus hospitalis KIN4/I] gi|156567028|gb|ABU82433.1| pyruvate ferredoxin oxidoreductase, delta subunit [Ignicoccus hospitalis KIN4/I] Length = 102 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 4/63 (6%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E+C C+LC CP AI + G RY++D + C CG+C CPV+AI Sbjct: 42 EKCTRCRLCWIYCPDGAIIEVIDEKAKMG----KRYEVDYMHCKGCGICYAECPVNAIEW 97 Query: 121 GPN 123 P Sbjct: 98 VPE 100 >gi|156101541|ref|XP_001616464.1| RNase L inhibitor [Plasmodium vivax SaI-1] gi|148805338|gb|EDL46737.1| RNase L inhibitor, putative [Plasmodium vivax] Length = 619 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 1/70 (1%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 LR ++C K C C +++G C + + I CI CG+C + Sbjct: 20 LRIAIVSTDKCKP-KKCHLECKKNCPIVKTGKFCIEVEHTSKIAYISETLCIGCGICVKK 78 Query: 113 CPVDAIVEGP 122 CP AI Sbjct: 79 CPFSAITIIN 88 >gi|145637713|ref|ZP_01793366.1| electron transport complex protein RnfB [Haemophilus influenzae PittHH] gi|145641064|ref|ZP_01796645.1| electron transport complex protein RnfB [Haemophilus influenzae R3021] gi|148827107|ref|YP_001291860.1| electron transport complex protein RnfB [Haemophilus influenzae PittGG] gi|145269115|gb|EDK09065.1| electron transport complex protein RnfB [Haemophilus influenzae PittHH] gi|145274225|gb|EDK14090.1| electron transport complex protein RnfB [Haemophilus influenzae 22.4-21] gi|148718349|gb|ABQ99476.1| electron transport complex protein RnfB [Haemophilus influenzae PittGG] Length = 218 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 22/66 (33%), Gaps = 10/66 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C C CP AI + + I C C LC CP D Sbjct: 104 FIDENMCIGCTKCIQACPVDAIIGTNK----------AMHTIIPDLCTGCELCVAPCPTD 153 Query: 117 AIVEGP 122 I+ P Sbjct: 154 CILMIP 159 >gi|56476980|ref|YP_158569.1| formate dehydrogenase alpha subunit, molybdenum or tungsten enzyme [Aromatoleum aromaticum EbN1] gi|56313023|emb|CAI07668.1| Formate dehydrogenase alpha subunit,molybdenum or tungsten enzyme [Aromatoleum aromaticum EbN1] Length = 950 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 27/84 (32%), Gaps = 6/84 (7%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRY 96 F + R + CI C C C Q + R T + Sbjct: 125 FAPRAQPQPDRSHPGI---AVDLAACIQCTRCVRACREVQVNDVIGLARRGADTAIVFDF 181 Query: 97 D--IDMIKCIYCGLCQEACPVDAI 118 D + C+ CG C +ACP A+ Sbjct: 182 DDAMGTSSCVGCGECVQACPTGAL 205 >gi|297517233|ref|ZP_06935619.1| electron transport complex protein RnfB [Escherichia coli OP50] Length = 101 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI + + + C C LC + CP I Sbjct: 22 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTHCI 71 Query: 119 VEGPNFEFATETRQEL 134 P E + +L Sbjct: 72 SLQPVAETPDSWKWDL 87 Score = 34.3 bits (77), Expect = 5.8, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C C +ACPVDAI Sbjct: 21 IDENNCIGCTKCIQACPVDAI 41 >gi|253699316|ref|YP_003020505.1| molybdopterin oxidoreductase [Geobacter sp. M21] gi|251774166|gb|ACT16747.1| molybdopterin oxidoreductase [Geobacter sp. M21] Length = 822 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 22/66 (33%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + RCI C+ C + D + C +CG C ACP Sbjct: 140 ESDPNRCILCEKCVKVDHEVVGCDAIEVVNKGEAAIIDTVDGKPLDCEFCGNCVAACPTG 199 Query: 117 AIVEGP 122 A++ P Sbjct: 200 ALITKP 205 >gi|239627594|ref|ZP_04670625.1| Pyruvate:ferredoxin oxidoreductase [Clostridiales bacterium 1_7_47_FAA] gi|239517740|gb|EEQ57606.1| Pyruvate:ferredoxin oxidoreductase [Clostridiales bacterium 1_7_47FAA] Length = 1174 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 32/108 (29%), Gaps = 22/108 (20%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRC--HDGTR 91 RG N + CI C C +CP A + G Sbjct: 677 RGIGVKVPSWN-PDTCIQCNQCAYVCPHAVIRPLLLTEEEVQDAPKGMKTAKAIGKGGEG 735 Query: 92 RTVRYDIDMIKCIYCGLCQEACP--VDAIVEGPNFEFATETRQELYYD 137 + ++ C CG C CP A+ P E E ++ +D Sbjct: 736 YVFHMAVSVMDCSGCGSCANVCPAKEKALTMKPLEE---ERKEAAIWD 780 >gi|224368544|ref|YP_002602707.1| HdrA3' [Desulfobacterium autotrophicum HRM2] gi|223691260|gb|ACN14543.1| HdrA3' [Desulfobacterium autotrophicum HRM2] Length = 608 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 7/62 (11%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +RC C C A CP +A +E G ++ +C CG C CP ++I Sbjct: 511 NADRCSGCGNCVAACPFEACRLEPG-------NGRYHCRVNPFRCTGCGTCVAVCPNNSI 563 Query: 119 VE 120 Sbjct: 564 QL 565 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 9/31 (29%), Positives = 14/31 (45%) Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + ++ +C CG C ACP +A P Sbjct: 504 KFAIARVNADRCSGCGNCVAACPFEACRLEP 534 >gi|221202549|ref|ZP_03575578.1| dihydroorotate dehydrogenase family protein [Burkholderia multivorans CGD2M] gi|221207748|ref|ZP_03580755.1| dihydroorotate dehydrogenase family protein [Burkholderia multivorans CGD2] gi|221172245|gb|EEE04685.1| dihydroorotate dehydrogenase family protein [Burkholderia multivorans CGD2] gi|221177586|gb|EEE10004.1| dihydroorotate dehydrogenase family protein [Burkholderia multivorans CGD2M] Length = 435 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 6/76 (7%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + ++RCI C LC C + ++ R DG R +++ C+ Sbjct: 328 KYLNLQYDIKARIDQDRCIQCGLCHIACED--TSHQAITREKDGVR---HFEVVDADCVG 382 Query: 106 CGLCQEACPV-DAIVE 120 C LC CPV I Sbjct: 383 CNLCMHVCPVEQCITM 398 >gi|254514895|ref|ZP_05126956.1| iron-sulfur cluster binding protein [gamma proteobacterium NOR5-3] gi|219677138|gb|EED33503.1| iron-sulfur cluster binding protein [gamma proteobacterium NOR5-3] Length = 473 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 21/96 (21%), Gaps = 10/96 (10%) Query: 29 KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88 + ++ P E L +CI C C CP Sbjct: 281 RRPGDVDGPVETHFVLLDNHRSEILASDYAEMLQCIRCGACLNHCPVYMNAGGHAYGWVY 340 Query: 89 GTRRTVRYD----------IDMIKCIYCGLCQEACP 114 C CG C+E CP Sbjct: 341 PGPMGSVLTPLLTSLEDSAHLPDACTACGRCEEVCP 376 Score = 33.5 bits (75), Expect = 8.8, Method: Composition-based stats. Identities = 10/25 (40%), Positives = 13/25 (52%) Query: 100 MIKCIYCGLCQEACPVDAIVEGPNF 124 M++CI CG C CPV G + Sbjct: 312 MLQCIRCGACLNHCPVYMNAGGHAY 336 >gi|170765779|ref|ZP_02900590.1| 4Fe-4S binding domain protein [Escherichia albertii TW07627] gi|170124925|gb|EDS93856.1| 4Fe-4S binding domain protein [Escherichia albertii TW07627] Length = 247 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 24/69 (34%), Gaps = 11/69 (15%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C CK+C CP AI G ID +C CG C+ CP Sbjct: 1 MSYIDQTSCTGCKVCLLFCPDDAIEYYDGKCS-----------IDSKQCTLCGCCEGCCP 49 Query: 115 VDAIVEGPN 123 AI N Sbjct: 50 FSAIHPTTN 58 >gi|153812806|ref|ZP_01965474.1| hypothetical protein RUMOBE_03213 [Ruminococcus obeum ATCC 29174] gi|149831166|gb|EDM86255.1| hypothetical protein RUMOBE_03213 [Ruminococcus obeum ATCC 29174] Length = 623 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 10/68 (14%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 ALR++ E CI C C CPA AI+ + Y I+ CI CG C++ Sbjct: 563 ALRKFHINPEFCIGCGKCAKNCPAGAIS----------GKIKSPYHINNDVCIKCGSCKD 612 Query: 112 ACPVDAIV 119 C DA+ Sbjct: 613 NCNFDAVY 620 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 16/40 (40%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 I+ ++ I+ CI CG C + CP AI Sbjct: 550 HIKDKKCRAKVCTALRKFHINPEFCIGCGKCAKNCPAGAI 589 >gi|85704196|ref|ZP_01035299.1| iron-sulfur cluster-binding protein [Roseovarius sp. 217] gi|85671516|gb|EAQ26374.1| iron-sulfur cluster-binding protein [Roseovarius sp. 217] Length = 653 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 9/82 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C C ++CP+ A+ + C+ CG+C CP AI Sbjct: 501 NTDACTLCLSCVSLCPSGALMDNEDK---------PQLRFQEDACLQCGICATICPEKAI 551 Query: 119 VEGPNFEFATETRQELYYDKER 140 P ++ ++E Sbjct: 552 TLEPRMNLDDSALTQVVLNEEE 573 Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 20/55 (36%), Gaps = 11/55 (20%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C ICP AIT + ID + C CG C CP AI Sbjct: 277 TGCSKCLDICPTGAITPDGD-----------HVSIDPMICAGCGACAARCPSGAI 320 >gi|312144188|ref|YP_003995634.1| hydrogenase, Fe-only [Halanaerobium sp. 'sapolanicus'] gi|311904839|gb|ADQ15280.1| hydrogenase, Fe-only [Halanaerobium sp. 'sapolanicus'] Length = 574 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 3/78 (3%) Query: 59 GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115 +CI C C +C Q ++ + + T +D+ C CG C CPV Sbjct: 148 DLNKCILCGRCVRVCEEVQGVSALQFTQRGFDSVVTTAFDMPQRDVNCANCGQCASVCPV 207 Query: 116 DAIVEGPNFEFATETRQE 133 AI E E ++ Sbjct: 208 GAINEKSEIENVWAALED 225 >gi|256544554|ref|ZP_05471927.1| NADP-reducing hydrogenase, subunit C [Anaerococcus vaginalis ATCC 51170] gi|256399879|gb|EEU13483.1| NADP-reducing hydrogenase, subunit C [Anaerococcus vaginalis ATCC 51170] Length = 512 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 10/54 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + CI C C+ CP I+ + ++ ID KCI CG C CP Sbjct: 460 DNCIGCGTCKRNCPVGCISG----------KVKEKHTIDQEKCIKCGTCYNVCP 503 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 15/40 (37%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C G+ + + CI CG C+ CPV I Sbjct: 438 DHIKNKHCPAGSCKALLSYKIEDNCIGCGTCKRNCPVGCI 477 >gi|158520577|ref|YP_001528447.1| NAD-dependent epimerase/dehydratase [Desulfococcus oleovorans Hxd3] gi|158509403|gb|ABW66370.1| NAD-dependent epimerase/dehydratase [Desulfococcus oleovorans Hxd3] Length = 589 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 12/73 (16%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C C C AITIE+G H+ +C CG C+ CP A+ Sbjct: 518 CVGCGTCVEFCGFGAITIENGKAVHN------------DQCRGCGRCETRCPNHAVRITI 565 Query: 123 NFEFATETRQELY 135 N TE ++ Sbjct: 566 NNPNVTEDVKKRI 578 >gi|222823423|ref|YP_002574997.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Campylobacter lari RM2100] gi|222538645|gb|ACM63746.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Campylobacter lari RM2100] Length = 1184 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 20/124 (16%), Positives = 34/124 (27%), Gaps = 24/124 (19%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA------------------QAIT 79 FE G+T RG + CI C C ++CP Sbjct: 668 FEHGTTEYEKRGVGVMVPRWIE-TNCIQCNQCASVCPHAVIRPFLIDEKELENAPAGVKE 726 Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-----AIVEGPNFEFATETRQEL 134 + + + + + C C LC CP + G + + + Sbjct: 727 HSLNAKGVKEQKLNFKIQVSPLDCTGCELCVHECPTKEKSLVMVPLGEELDHGEQENADY 786 Query: 135 YYDK 138 + K Sbjct: 787 LFKK 790 >gi|328952782|ref|YP_004370116.1| formate dehydrogenase, alpha subunit [Desulfobacca acetoxidans DSM 11109] gi|328453106|gb|AEB08935.1| formate dehydrogenase, alpha subunit [Desulfobacca acetoxidans DSM 11109] Length = 897 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDIDM--IKCIYCGLCQE 111 +CI C C IC Q + R D C++CG C + Sbjct: 142 MIVRDFSKCIMCGRCVRICNERQVNEAIQIGYRGHHNKIVTRADSPYIDSDCVFCGQCVQ 201 Query: 112 ACPVDAIVE 120 ACPV A++ Sbjct: 202 ACPVGALIF 210 >gi|315634427|ref|ZP_07889714.1| electron transport complex protein RnfB [Aggregatibacter segnis ATCC 33393] gi|315477017|gb|EFU67762.1| electron transport complex protein RnfB [Aggregatibacter segnis ATCC 33393] Length = 197 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 21/64 (32%), Gaps = 10/64 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C C CP AI + + + I C C LC E CP Sbjct: 108 FIDENMCIGCTKCIQACPVDAIIGSNK----------LMHTIIPDLCTGCELCVEPCPTS 157 Query: 117 AIVE 120 I Sbjct: 158 CISM 161 Score = 35.5 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 13/25 (52%), Positives = 15/25 (60%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 ID CI C C +ACPVDAI+ Sbjct: 109 IDENMCIGCTKCIQACPVDAIIGSN 133 >gi|300114448|ref|YP_003761023.1| electron transport complex RnfABCDGE type subunit C [Nitrosococcus watsonii C-113] gi|299540385|gb|ADJ28702.1| electron transport complex, RnfABCDGE type, C subunit [Nitrosococcus watsonii C-113] Length = 515 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 21/67 (31%), Gaps = 2/67 (2%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 CI C C CP + + D + CI CG C CP I Sbjct: 368 PCIRCGACVEACPVGLLPQQLYWHT-RAKELDKTQDYHLFDCIECGCCAYVCPSH-IPLV 425 Query: 122 PNFEFAT 128 + +A Sbjct: 426 QYYRYAK 432 >gi|242239348|ref|YP_002987529.1| electron transport complex protein RnfB [Dickeya dadantii Ech703] gi|242131405|gb|ACS85707.1| electron transport complex, RnfABCDGE type, B subunit [Dickeya dadantii Ech703] Length = 191 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 24/83 (28%), Gaps = 10/83 (12%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 S E + E CI C C CP AI + + + Sbjct: 93 PQPLSDDIPPEPQRQVAWIDESNCIGCTKCIQACPVDAIVGST----------RAIHTVI 142 Query: 100 MIKCIYCGLCQEACPVDAIVEGP 122 C C LC CP D I P Sbjct: 143 SDLCTGCDLCIPPCPTDCIELRP 165 >gi|218695758|ref|YP_002403425.1| dihydropyrimidine dehydrogenase [Escherichia coli 55989] gi|218352490|emb|CAU98267.1| putative oxidoreductase subunit [Escherichia coli 55989] Length = 401 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + ++C+ C C C G + + + +T + K Sbjct: 314 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 367 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 368 CVGCLLCGHVCPVGCIELG 386 >gi|213161193|ref|ZP_03346903.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 238 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + +E+C+ C C C G + + + + K Sbjct: 151 IPAEDLDRSYIVYPRINQEKCVGCGRCYISCYDG------GHQAMEWDEHSHTPHCNTEK 204 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 205 CVGCLLCGHVCPVACIDLG 223 >gi|218244988|ref|YP_002370359.1| bidirectional hydrogenase complex protein HoxU [Cyanothece sp. PCC 8801] gi|218165466|gb|ACK64203.1| 4Fe-4S ferredoxin, iron-sulphur binding, conserved site [Cyanothece sp. PCC 8801] Length = 238 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 28/89 (31%), Gaps = 12/89 (13%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRR 92 +P K S G RCI C C +C A + R + Sbjct: 128 QFPDRKIDVSHPQFG--------IDHNRCILCTRCVRVCDEIEGAHVWDVANRGGNSFIV 179 Query: 93 TVRYDID--MIKCIYCGLCQEACPVDAIV 119 + + C CG C EACP AI Sbjct: 180 SGINQPWGDVDACTSCGKCVEACPTGAIF 208 >gi|251798657|ref|YP_003013388.1| dihydropyrimidine dehydrogenase [Paenibacillus sp. JDR-2] gi|247546283|gb|ACT03302.1| dihydroorotate dehydrogenase family protein [Paenibacillus sp. JDR-2] Length = 434 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 31/105 (29%), Gaps = 14/105 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117 EE CI C C C + DG C+ C LC CPV+ A Sbjct: 338 HEENCIVCNKCHIACEDTSHQCIERLTTDDGRAYLKV---REEDCVGCNLCSIVCPVEGA 394 Query: 118 IVE----GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158 I + RQ+ + GD ++ + Sbjct: 395 ISMVEIPSGELPMSWNARQKAVA------SVGDSNQAPGGASKEA 433 >gi|194736993|ref|YP_002115276.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194712495|gb|ACF91716.1| dihydroorotate dehydrogenase family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] Length = 411 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + +E+C+ C C C G + + + + K Sbjct: 324 IPAEDLDRSYIVYPQINQEKCVGCGRCYISCYDG------GHQAMEWDEHSRTPHCNTEK 377 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 378 CVGCLLCGHVCPVACIDLG 396 >gi|167624997|ref|YP_001675291.1| FAD linked oxidase domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|167355019|gb|ABZ77632.1| FAD linked oxidase domain protein [Shewanella halifaxensis HAW-EB4] Length = 939 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 32/93 (34%), Gaps = 9/93 (9%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 E + I + + D + KCI CG C++ CP A+ P AT Sbjct: 509 EGLLNPGVILNDDNQIHVKNIKPCPVVDDLIDKCIECGFCEKTCPTSALNMSPRQRIATL 568 Query: 130 TRQELYYDKERLLNNGDRWESEIVRNIVTDSPY 162 R+ ERL +G + + Y Sbjct: 569 -RE-----IERLEQSG---GKRAAEQMRAAAKY 592 Score = 38.2 bits (87), Expect = 0.41, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 18/76 (23%) Query: 57 PNGEERCIACKLCEAICPAQAITIES-----------------GPRCHDGTRRTVRYDID 99 + ++CI C CE CP A+ + G R + R +YD+ Sbjct: 536 DDLIDKCIECGFCEKTCPTSALNMSPRQRIATLREIERLEQSGGKRAAEQMRAAAKYDVV 595 Query: 100 MIKCIYCGLCQEACPV 115 C C LC ACPV Sbjct: 596 -DTCAACQLCTIACPV 610 >gi|197117056|ref|YP_002137483.1| Fe(III) reductase subunit alpha [Geobacter bemidjiensis Bem] gi|197086416|gb|ACH37687.1| Fe(III) reductase, alpha subunit [Geobacter bemidjiensis Bem] Length = 822 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 22/66 (33%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + RCI C+ C + D + C +CG C ACP Sbjct: 140 ESDPNRCILCEKCVKVDHEIVGCDAIEVVNKGEAAIIDTVDGKPLNCEFCGNCVAACPTG 199 Query: 117 AIVEGP 122 A++ P Sbjct: 200 ALITKP 205 >gi|187927967|ref|YP_001898454.1| ferredoxin [Ralstonia pickettii 12J] gi|187724857|gb|ACD26022.1| electron transport complex, RnfABCDGE type, B subunit [Ralstonia pickettii 12J] Length = 276 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 23/65 (35%), Gaps = 10/65 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ERCI C LC CP AI + + C C LC CPVD I Sbjct: 90 DPERCIGCTLCIQACPVDAIVGAPK----------AMHTVLEDWCTGCDLCVPPCPVDCI 139 Query: 119 VEGPN 123 P Sbjct: 140 DMIPI 144 Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats. Identities = 14/21 (66%), Positives = 16/21 (76%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID +CI C LC +ACPVDAI Sbjct: 89 IDPERCIGCTLCIQACPVDAI 109 >gi|21675056|ref|NP_663121.1| putative glutamate synthase (NADPH) small subunit [Chlorobium tepidum TLS] gi|21648293|gb|AAM73463.1| iron-sulfur cluster-binding protein, gltD family [Chlorobium tepidum TLS] Length = 577 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 28/96 (29%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 + +AK T P + +RC++C C + + Sbjct: 477 HTPQAKRTSIKPEVVVGNHDELLEALTPEQAITESKRCMSCGFCFDCKQCVSFCPQEAIT 536 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 + D KC+ C LC CP I G Sbjct: 537 RFRDNPAGEKVYTDYTKCVGCHLCSLVCPCGYIQMG 572 >gi|18310420|ref|NP_562354.1| anaerobic sulfite reductase subunit C [Clostridium perfringens str. 13] gi|110799551|ref|YP_696129.1| anaerobic sulfite reductase, subunit C [Clostridium perfringens ATCC 13124] gi|168206343|ref|ZP_02632348.1| anaerobic sulfite reductase, subunit C [Clostridium perfringens E str. JGS1987] gi|168210029|ref|ZP_02635654.1| anaerobic sulfite reductase, subunit C [Clostridium perfringens B str. ATCC 3626] gi|168214452|ref|ZP_02640077.1| anaerobic sulfite reductase, subunit C [Clostridium perfringens CPE str. F4969] gi|168216826|ref|ZP_02642451.1| anaerobic sulfite reductase, subunit C [Clostridium perfringens NCTC 8239] gi|169347242|ref|ZP_02866181.1| anaerobic sulfite reductase, subunit C [Clostridium perfringens C str. JGS1495] gi|182626960|ref|ZP_02954692.1| anaerobic sulfite reductase, subunit C [Clostridium perfringens D str. JGS1721] gi|18145100|dbj|BAB81144.1| anaerobic sulfite reductase subunit C [Clostridium perfringens str. 13] gi|110674198|gb|ABG83185.1| anaerobic sulfite reductase, subunit C [Clostridium perfringens ATCC 13124] gi|169296638|gb|EDS78769.1| anaerobic sulfite reductase, subunit C [Clostridium perfringens C str. JGS1495] gi|170662184|gb|EDT14867.1| anaerobic sulfite reductase, subunit C [Clostridium perfringens E str. JGS1987] gi|170711911|gb|EDT24093.1| anaerobic sulfite reductase, subunit C [Clostridium perfringens B str. ATCC 3626] gi|170714081|gb|EDT26263.1| anaerobic sulfite reductase, subunit C [Clostridium perfringens CPE str. F4969] gi|177907696|gb|EDT70314.1| anaerobic sulfite reductase, subunit C [Clostridium perfringens D str. JGS1721] gi|182381086|gb|EDT78565.1| anaerobic sulfite reductase, subunit C [Clostridium perfringens NCTC 8239] Length = 326 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 25/88 (28%), Gaps = 8/88 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + G + RC++C C C +A S Sbjct: 147 CPNDCIKARMHDFGIIGMTEPQYERNRCVSCGACVRACKKKATGALSFENFKVVR----- 201 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPN 123 D KCI CG C CP +A Sbjct: 202 ---DGSKCIGCGECVMNCPTNAWTRSKE 226 >gi|329898086|ref|ZP_08272295.1| Electron transport complex protein RnfB [gamma proteobacterium IMCC3088] gi|328920958|gb|EGG28383.1| Electron transport complex protein RnfB [gamma proteobacterium IMCC3088] Length = 198 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 27/82 (32%), Gaps = 10/82 (12%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E E E+ CI C C CP AI + + + + Sbjct: 96 EALPLDAEHGVEKPKTVAYIHEDECIGCTKCIQACPVDAILGAAK----------LMHTV 145 Query: 99 DMIKCIYCGLCQEACPVDAIVE 120 +C C LC E CPVD I Sbjct: 146 IASECTGCDLCVEPCPVDCIDM 167 >gi|260173417|ref|ZP_05759829.1| pyruvate-flavodoxin oxidoreductase [Bacteroides sp. D2] gi|315921689|ref|ZP_07917929.1| pyruvate-flavodoxin oxidoreductase [Bacteroides sp. D2] gi|313695564|gb|EFS32399.1| pyruvate-flavodoxin oxidoreductase [Bacteroides sp. D2] Length = 1183 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 28/81 (34%), Gaps = 15/81 (18%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG A N E CI C C +CP A + T Sbjct: 676 RGVAAFVPEWN-PENCIQCNKCAYVCPHASIRPFVLDAEEQKGAKFEQLKAVGKVFDGMT 734 Query: 94 VRYDIDMIKCIYCGLCQEACP 114 R +D++ C+ CG C + CP Sbjct: 735 FRIQVDVLDCLGCGNCADICP 755 >gi|269791767|ref|YP_003316671.1| NADH dehydrogenase (quinone) [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099402|gb|ACZ18389.1| NADH dehydrogenase (quinone) [Thermanaerovibrio acidaminovorans DSM 6589] Length = 596 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 10/66 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L RY E+C C LC +CPA AI+ + + ID KC+ CG C A Sbjct: 538 LVRYVIDPEKCKGCTLCAKVCPADAISG----------KVREPHVIDQDKCVKCGACYTA 587 Query: 113 CPVDAI 118 C AI Sbjct: 588 CKFGAI 593 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 27/62 (43%), Gaps = 8/62 (12%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 +E + VRY ID KC C LC + CP DAI + + R+ D+ Sbjct: 524 HVEEKRCPAGKCKDLVRYVIDPEKCKGCTLCAKVCPADAI--------SGKVREPHVIDQ 575 Query: 139 ER 140 ++ Sbjct: 576 DK 577 >gi|254510639|ref|ZP_05122706.1| dihydropyrimidine dehydrogenase [NADP+] [Rhodobacteraceae bacterium KLH11] gi|221534350|gb|EEE37338.1| dihydropyrimidine dehydrogenase [NADP+] [Rhodobacteraceae bacterium KLH11] Length = 434 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 8/78 (10%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + +++CI C C A C E +++ +C+ Sbjct: 330 QYLNLNYVAKAKIDQDQCIKCGRCYAAC-------EDTSHQAISMSAERVFEVIDEECVA 382 Query: 106 CGLCQEACPVD-AIVEGP 122 C LC + CPV+ I P Sbjct: 383 CNLCVDVCPVEGCISMIP 400 >gi|253701406|ref|YP_003022595.1| NADH dehydrogenase (quinone) [Geobacter sp. M21] gi|251776256|gb|ACT18837.1| NADH dehydrogenase (quinone) [Geobacter sp. M21] Length = 636 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 15/92 (16%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 L+Y F+ + + ++ L + +C C C CPA AI Sbjct: 534 TLKY-FRHEYEAHIKEKRCPALSC----KELIAFHIDPAKCKGCGSCLRKCPATAIEG-- 586 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + + ID KC CG C EACP Sbjct: 587 --------GKKTIHVIDQEKCTKCGTCIEACP 610 Score = 38.5 bits (88), Expect = 0.31, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 18/53 (33%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + I+ + + + ID KC CG C CP AI G Sbjct: 536 KYFRHEYEAHIKEKRCPALSCKELIAFHIDPAKCKGCGSCLRKCPATAIEGGK 588 >gi|188584100|ref|YP_001927545.1| formate dehydrogenase, alpha subunit [Methylobacterium populi BJ001] gi|179347598|gb|ACB83010.1| formate dehydrogenase, alpha subunit [Methylobacterium populi BJ001] Length = 950 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 30/98 (30%), Gaps = 2/98 (2%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVR 95 K ++ + + + +CI C C C + R D Sbjct: 148 HVKPTSDRYLPKDESNPYFTYDPSKCIVCNRCVRACEETQGTFALTIEGRGFDSRVAAGP 207 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 + +C+ CG C +ACP + E + E Sbjct: 208 TNFMQSECVSCGACVQACPTATLQEKTVHLYGQPEHSE 245 >gi|147677003|ref|YP_001211218.1| iron only hydrogenase large subunit [Pelotomaculum thermopropionicum SI] gi|146273100|dbj|BAF58849.1| iron only hydrogenase large subunit, C-terminal domain [Pelotomaculum thermopropionicum SI] Length = 530 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 35/131 (26%), Gaps = 22/131 (16%) Query: 5 RCNVSFLFLKEFVGAFFLCL--------RYFFKAKTTINYPFEKGSTSPRFRGEHALRRY 56 R + + + L + G+ + RG + Sbjct: 23 RSFLKMIAGTGLLVGLSGALAGCVEKSPEHAGGKGWLPYQYNVAGNLPAQVRGRVPIDAD 82 Query: 57 P----NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 +++CI C C +C +D CI CG C A Sbjct: 83 NPSITRDDQKCILCGQCLEVC----------KNVESVYGYYDLPVVDETICINCGQCSMA 132 Query: 113 CPVDAIVEGPN 123 CP AI E + Sbjct: 133 CPSGAISERDD 143 >gi|91782519|ref|YP_557725.1| ferredoxin [Burkholderia xenovorans LB400] gi|91686473|gb|ABE29673.1| Electron transport complex, RnfABCDGE type, B subunit [Burkholderia xenovorans LB400] Length = 279 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 23/64 (35%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ CI C LC CP AI + + C C LC CPVD I Sbjct: 85 DEQVCIGCTLCMQACPVDAIVGAPKQ----------MHTVIAELCTGCDLCVPPCPVDCI 134 Query: 119 VEGP 122 P Sbjct: 135 ALPP 138 Score = 37.0 bits (84), Expect = 0.97, Method: Composition-based stats. Identities = 14/21 (66%), Positives = 15/21 (71%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C LC +ACPVDAI Sbjct: 84 IDEQVCIGCTLCMQACPVDAI 104 >gi|332880411|ref|ZP_08448085.1| pyruvate synthase [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681399|gb|EGJ54322.1| pyruvate synthase [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 1182 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 47/146 (32%), Gaps = 36/146 (24%) Query: 28 FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------QAIT 79 FK +P +G+ + RG A N + CI C C +CP A Sbjct: 658 FKGIEDGTWP--QGTAAYEKRGVAAFVPTWN-ADNCIQCNKCAYVCPHASIRPFVLDAEE 714 Query: 80 I-------ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP--------------VDAI 118 + R + ++ C+ CG C + CP + Sbjct: 715 MKGFNAPVIEMKAPAAMKGMNFRIQVSVMDCLGCGNCADVCPGNPKLGKALTMVPLEQEL 774 Query: 119 VEGPNFEFATETRQELYYDKERLLNN 144 E PN+E+ + K+ L++ Sbjct: 775 AEAPNWEYCVKN----VKSKQDLVDI 796 >gi|332654613|ref|ZP_08420356.1| [Fe] hydrogenase gamma [Ruminococcaceae bacterium D16] gi|332516577|gb|EGJ46183.1| [Fe] hydrogenase gamma [Ruminococcaceae bacterium D16] Length = 696 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 9/63 (14%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E+CI C +C+ C + + G + CIYCG C CPVD+I E Sbjct: 37 EKCIRCGMCKEACTNLMGVLGTYSLEETGGK---------AVCIYCGQCANVCPVDSITE 87 Query: 121 GPN 123 Sbjct: 88 RDE 90 >gi|325529420|gb|EGD06341.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Burkholderia sp. TJI49] Length = 273 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 30/89 (33%), Gaps = 6/89 (6%) Query: 50 EHALRRYPNGEERCIA-CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 + L +C C C +C AI +D +CI C Sbjct: 31 QGVLGMPRFDPAKCEPGCDACARVCDTHAIAFVPSEDG-----HAAPPAVDFGRCIVCQR 85 Query: 109 CQEACPVDAIVEGPNFEFATETRQELYYD 137 C +ACP A ++ A R +L +D Sbjct: 86 CTQACPTGAFTPSEDWAVAVHERADLKWD 114 >gi|297521229|ref|ZP_06939615.1| electron transport complex protein RnfC [Escherichia coli OP50] Length = 394 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 191 PQEEQSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 248 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 249 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 297 >gi|254496015|ref|ZP_05108918.1| iron-sulfur cluster binding protein [Legionella drancourtii LLAP12] gi|254354764|gb|EET13396.1| iron-sulfur cluster binding protein [Legionella drancourtii LLAP12] Length = 204 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 37/98 (37%), Gaps = 21/98 (21%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 CI C C CP AI G+ + + I C CGLC CPVD I Sbjct: 83 ECIGCTKCIKACPVDAI---------IGSGKLMHAVIAHE-CTGCGLCVAPCPVDCIDMV 132 Query: 122 ----PNF--EFATETRQELYYDKERLLNNGDRWESEIV 153 P++ E A RQ + RLL D E + Sbjct: 133 TLAAPDYDQELA---RQRFNAKQTRLLR--DEHEQQQA 165 Score = 36.2 bits (82), Expect = 1.3, Method: Composition-based stats. Identities = 13/28 (46%), Positives = 15/28 (53%) Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAI 118 R I +CI C C +ACPVDAI Sbjct: 72 RAPSVAVIREAECIGCTKCIKACPVDAI 99 >gi|221215696|ref|ZP_03588657.1| dihydroorotate dehydrogenase family protein [Burkholderia multivorans CGD1] gi|221164398|gb|EED96883.1| dihydroorotate dehydrogenase family protein [Burkholderia multivorans CGD1] Length = 435 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 6/76 (7%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + ++RCI C LC C + ++ R DG R +++ C+ Sbjct: 328 KYLNLQYDIKARIDQDRCIQCGLCHIACED--TSHQAITREKDGVR---HFEVVDADCVG 382 Query: 106 CGLCQEACPV-DAIVE 120 C LC CPV I Sbjct: 383 CNLCMHVCPVEQCITM 398 >gi|163741305|ref|ZP_02148697.1| iron-sulfur cluster-binding protein [Phaeobacter gallaeciensis 2.10] gi|161385658|gb|EDQ10035.1| iron-sulfur cluster-binding protein [Phaeobacter gallaeciensis 2.10] Length = 431 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 9/66 (13%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C+ C +CP A+ G D C+ CGLC C +AI Sbjct: 249 DCTLCQACTWVCPTNAL---------IGAENGGGLDFVEADCMQCGLCVSVCRQNAIRLV 299 Query: 122 PNFEFA 127 P E + Sbjct: 300 PRLELS 305 >gi|120601153|ref|YP_965553.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Desulfovibrio vulgaris DP4] gi|120561382|gb|ABM27126.1| glutamate synthase (NADPH) GltB3 subunit [Desulfovibrio vulgaris DP4] Length = 777 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 6/61 (9%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C +CE ICP AI+ R G R +D +CI CG C ACP Sbjct: 719 CRDCGVCETICPQGAIS-----RRDLGEGRFEM-TVDGERCIGCGFCAGACPCGIWNLVE 772 Query: 123 N 123 N Sbjct: 773 N 773 >gi|38569281|gb|AAR24315.1| reductive dehalogenase homologous protein RdhA11 [Dehalococcoides sp. CBDB1] Length = 479 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 3/74 (4%) Query: 56 YPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + C C +C CP AI R + + D+ C +C +CQ Sbjct: 359 DFGARKFCETCGICADSCPQGAIQQGEATWDARYAWENSGYLGWRNDLTLCNHCPVCQGV 418 Query: 113 CPVDAIVEGPNFEF 126 CP +A + E Sbjct: 419 CPFNAFDKSGVHEI 432 >gi|254465707|ref|ZP_05079118.1| 4Fe-4S binding domain protein [Rhodobacterales bacterium Y4I] gi|206686615|gb|EDZ47097.1| 4Fe-4S binding domain protein [Rhodobacterales bacterium Y4I] Length = 318 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 9/69 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RC C C +CP+ A+++ C CGLC CP A+ Sbjct: 222 DAARCTHCSSCVWVCPSDALSLTENGGALS---------FVESLCFQCGLCVSICPQRAL 272 Query: 119 VEGPNFEFA 127 P + + Sbjct: 273 HMAPGMDLS 281 >gi|187778598|ref|ZP_02995071.1| hypothetical protein CLOSPO_02193 [Clostridium sporogenes ATCC 15579] gi|187772223|gb|EDU36025.1| hypothetical protein CLOSPO_02193 [Clostridium sporogenes ATCC 15579] Length = 411 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 25/84 (29%), Gaps = 6/84 (7%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 K + EE C+ C C C G + + ++ Sbjct: 321 KNIIPAEDLDRGYIVYPKFNEENCVGCGRCYISCYDG------GHQAIKWDVENRKPILE 374 Query: 100 MIKCIYCGLCQEACPVDAIVEGPN 123 C+ C LC CPV I +G Sbjct: 375 KENCVGCHLCANVCPVQCISKGEI 398 >gi|167761226|ref|ZP_02433353.1| hypothetical protein CLOSCI_03631 [Clostridium scindens ATCC 35704] gi|167660892|gb|EDS05022.1| hypothetical protein CLOSCI_03631 [Clostridium scindens ATCC 35704] Length = 595 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 36/97 (37%), Gaps = 15/97 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 LRY FK + + +K AL Y ++C C LC CP AIT Sbjct: 512 TLRY-FKDEYIAHIVDKKCPAGVC----KALLSYKIDADKCKGCTLCARTCPNDAITGAV 566 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + I+ KC+ CG C E C AI Sbjct: 567 KEP----------HVINQDKCVKCGACMEKCRFGAIY 593 >gi|218778029|ref|YP_002429347.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfatibacillum alkenivorans AK-01] gi|218759413|gb|ACL01879.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfatibacillum alkenivorans AK-01] Length = 352 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 12/60 (20%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E+CIAC C C AIT+E ++ +CI CG+C CP DA+ Sbjct: 274 DDEKCIACGACAEACHMDAITVEDAA------------FVNPDRCIGCGVCVSQCPSDAM 321 >gi|23450982|gb|AAN32622.1|AF373594_2 putative benzoyl-CoA oxygenase [Thauera aromatica] Length = 416 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 11/65 (16%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 R++ E CI C CE +CP AIT ++ Y + C C C C Sbjct: 12 RQHLIDPEVCIRCNTCEEMCPINAITHDA-----------RNYVVKFDVCKGCLACISPC 60 Query: 114 PVDAI 118 P AI Sbjct: 61 PTGAI 65 Score = 34.7 bits (78), Expect = 3.9, Method: Composition-based stats. Identities = 11/23 (47%), Positives = 14/23 (60%) Query: 98 IDMIKCIYCGLCQEACPVDAIVE 120 ID CI C C+E CP++AI Sbjct: 16 IDPEVCIRCNTCEEMCPINAITH 38 >gi|57242553|ref|ZP_00370491.1| pyruvate ferredoxin/flavodoxin oxidoreductase family protein [Campylobacter upsaliensis RM3195] gi|57016838|gb|EAL53621.1| pyruvate ferredoxin/flavodoxin oxidoreductase family protein [Campylobacter upsaliensis RM3195] Length = 1187 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 29/96 (30%), Gaps = 19/96 (19%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA------------------QAIT 79 FE G+T RG + CI C C ++CP Sbjct: 668 FEHGTTEFEKRGVGVMVPRWIE-ANCIQCNQCASVCPHAVIRPFLINDEEMAKAPRGVKE 726 Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 + G + + + + + C C LC CP Sbjct: 727 HALDAKGTKGEKLSFKIQVSPLDCTGCELCVHECPT 762 Score = 33.9 bits (76), Expect = 6.8, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 11/35 (31%), Gaps = 2/35 (5%) Query: 100 MIKCIYCGLCQEACPVDAI--VEGPNFEFATETRQ 132 CI C C CP I + E A R Sbjct: 689 EANCIQCNQCASVCPHAVIRPFLINDEEMAKAPRG 723 >gi|332093489|gb|EGI98547.1| hypothetical protein SB359474_2529 [Shigella boydii 3594-74] Length = 289 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + ++C+ C C C G + + + +T + K Sbjct: 202 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 255 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 256 CVGCLLCGHVCPVGCIELG 274 >gi|323698408|ref|ZP_08110320.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfovibrio sp. ND132] gi|323458340|gb|EGB14205.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfovibrio desulfuricans ND132] Length = 1196 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 35/117 (29%), Gaps = 18/117 (15%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR------ 92 STS + A++ + CI C C +CP A+ Sbjct: 662 VPLSTSKYEKRGVAIKVPEWIADNCIQCNQCAFVCPHAALRPVLVTEDEMKNAPAAFTTQ 721 Query: 93 ----------TVRYDIDMIKCIYCGLCQEACP--VDAIVEGPNFEFATETRQELYYD 137 R ++ + C+ CG C + CP A+V P E + Sbjct: 722 NAKGKDVAGLKYRMQVNTLDCLGCGNCADICPAKEKALVMKPIATQTGEQVPNFDFT 778 >gi|310778430|ref|YP_003966763.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Ilyobacter polytropus DSM 2926] gi|309747753|gb|ADO82415.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Ilyobacter polytropus DSM 2926] Length = 592 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 3/65 (4%) Query: 59 GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115 ++CI C+ CE +C Q + SG ++ D+ C YCG C CPV Sbjct: 148 DIDKCIMCRRCETMCNVIQTCGVLSGVNRGFEAVVAPAFEQDLEDTACTYCGQCVAVCPV 207 Query: 116 DAIVE 120 A+ E Sbjct: 208 GALHE 212 >gi|257094523|ref|YP_003168164.1| electron transport complex protein RnfC [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047047|gb|ACV36235.1| electron transport complex, RnfABCDGE type, C subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 583 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 22/67 (32%), Gaps = 2/67 (2%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 CI C C +CP + E + + CI CG C CP I Sbjct: 368 PCIRCGACAEVCPHELQPFELY-WFARARNFGKTQEYYLFDCIECGCCSYVCPSH-IPLV 425 Query: 122 PNFEFAT 128 F FA Sbjct: 426 QYFRFAK 432 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 12/29 (41%), Positives = 12/29 (41%), Gaps = 4/29 (13%) Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETR 131 CI CG C E CP E FE R Sbjct: 369 CIRCGACAEVCP----HELQPFELYWFAR 393 >gi|240168691|ref|ZP_04747350.1| pyruvate ferredoxin/flavodoxin oxidoreductase family protein [Mycobacterium kansasii ATCC 12478] Length = 1190 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 28/100 (28%), Gaps = 24/100 (24%) Query: 58 NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY--DIDMI 101 + CI C C +CP +A + RY + + Sbjct: 687 WDPDTCIQCGNCAFVCPHSVIRTTFYQQDLLREAPESFPSAPLNTVGLPGARYTLQVYVE 746 Query: 102 KCIYCGLCQEACP--------VDAIVEGPNFEFATETRQE 133 C C LC EACP AI E R+ Sbjct: 747 DCTGCNLCVEACPAVVPGTPVTKAINLARREPLVAEAREN 786 >gi|167623339|ref|YP_001673633.1| hydrogenase, Fe-only [Shewanella halifaxensis HAW-EB4] gi|167353361|gb|ABZ75974.1| hydrogenase, Fe-only [Shewanella halifaxensis HAW-EB4] Length = 410 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 10/62 (16%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 +C C C+ CP AI SG + I+ KC+ CG C CP AI+E Sbjct: 20 SKCKGCDACQKFCPTNAIEGASG----------AVHSINKEKCLSCGQCLINCPFGAIIE 69 Query: 121 GP 122 Sbjct: 70 TH 71 Score = 37.0 bits (84), Expect = 0.79, Method: Composition-based stats. Identities = 10/22 (45%), Positives = 13/22 (59%) Query: 97 DIDMIKCIYCGLCQEACPVDAI 118 +I KC C CQ+ CP +AI Sbjct: 16 EIQASKCKGCDACQKFCPTNAI 37 >gi|126178316|ref|YP_001046281.1| hypothetical protein Memar_0366 [Methanoculleus marisnigri JR1] gi|125861110|gb|ABN56299.1| protein of unknown function DUF362 [Methanoculleus marisnigri JR1] Length = 392 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 11/59 (18%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 CI C CE ICP AIT+ G ID+ +CI C C E C AI Sbjct: 332 CIGCGKCERICPVHAITVAEGKA-----------TIDLSRCIRCYCCHEMCTEHAIALS 379 Score = 40.5 bits (93), Expect = 0.088, Method: Composition-based stats. Identities = 12/31 (38%), Positives = 14/31 (45%) Query: 88 DGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 G R + CI CG C+ CPV AI Sbjct: 317 FGRTYAPRPGVIASSCIGCGKCERICPVHAI 347 >gi|158320025|ref|YP_001512532.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs] gi|158140224|gb|ABW18536.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs] Length = 623 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 28/73 (38%), Gaps = 10/73 (13%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R L+ E C C C ICP AI + Y I+ KCI CG Sbjct: 560 RTCQGLKVIEITSELCKGCSKCSRICPVGAIDG----------KIKEPYIINQEKCIKCG 609 Query: 108 LCQEACPVDAIVE 120 C E+C AI E Sbjct: 610 ACIESCAFAAIKE 622 >gi|83589957|ref|YP_429966.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica ATCC 39073] gi|83572871|gb|ABC19423.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Moorella thermoacetica ATCC 39073] Length = 365 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 32/102 (31%), Gaps = 22/102 (21%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + F L+ + + H+ EE CI C C CPA Sbjct: 159 LVGFGGTLKNLGMGCAS----------PSGKQMMHSDVLPRVEEEECIGCGKCRRWCPAG 208 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 AIT+ I+ CI CG C CP AI Sbjct: 209 AITVTEKA------------TINGELCIGCGECTVTCPRRAI 238 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 16/41 (39%) Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 + P V ++ +CI CG C+ CP AI Sbjct: 173 CASPSGKQMMHSDVLPRVEEEECIGCGKCRRWCPAGAITVT 213 >gi|148257287|ref|YP_001241872.1| dihydropyrimidine dehydrogenase [Bradyrhizobium sp. BTAi1] gi|146409460|gb|ABQ37966.1| dihydrouracil dehydrogenase (NAD+) / dihydropyrimidine dehydrogenase (NADP+) [Bradyrhizobium sp. BTAi1] Length = 441 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 30/97 (30%), Gaps = 6/97 (6%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 T + + + ++ CI C C C S +++ Sbjct: 322 VPRKTEWQHLNLDYVVKAHIDQDLCIKCGRCHIGCED-----TSHQAISSLKDGQRHFEV 376 Query: 99 DMIKCIYCGLCQEACP-VDAIVEGPNFEFATETRQEL 134 +C+ C LC CP + I P E + R L Sbjct: 377 IEEECVGCNLCAVVCPIENCITMVPLREGEVDRRTGL 413 >gi|325262543|ref|ZP_08129280.1| protein HymB [Clostridium sp. D5] gi|324032375|gb|EGB93653.1| protein HymB [Clostridium sp. D5] Length = 628 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 30/69 (43%), Gaps = 10/69 (14%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 A+R++ ERC C C CP AI+ + Y ID KCI CG C+ Sbjct: 568 AMRQFIISAERCKGCSKCARNCPVGAISGQIKEP----------YVIDNEKCIKCGACES 617 Query: 112 ACPVDAIVE 120 AC AI Sbjct: 618 ACAFGAIHI 626 Score = 37.4 bits (85), Expect = 0.65, Method: Composition-based stats. Identities = 9/41 (21%), Positives = 13/41 (31%) Query: 78 ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + ++ I +C C C CPV AI Sbjct: 554 QHVVEKKCVSHNCTAMRQFIISAERCKGCSKCARNCPVGAI 594 >gi|323142033|ref|ZP_08076881.1| pyruvate synthase [Phascolarctobacterium sp. YIT 12067] gi|322413420|gb|EFY04291.1| pyruvate synthase [Phascolarctobacterium sp. YIT 12067] Length = 1170 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 25/89 (28%), Gaps = 17/89 (19%) Query: 51 HALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY 96 A+ + CI C C +CP +A Sbjct: 676 IAIDVPEWQIDTCIQCNQCAFVCPHAAIRPVLMTEEEAAKAPATLPSKPAIGAKGLMFSM 735 Query: 97 DIDMIKCIYCGLCQEACPVD---AIVEGP 122 I + C CG C + CP A+V P Sbjct: 736 SISPLDCTGCGNCAQVCPAPKAKALVMKP 764 >gi|320178009|gb|EFW52991.1| Pyruvate-flavodoxin oxidoreductase [Shigella boydii ATCC 9905] Length = 1174 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PA--------------QAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPV-- 115 P A R +Y + CI C LC E CP Sbjct: 700 PHSTIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCIGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|295109804|emb|CBL23757.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Ruminococcus obeum A2-162] Length = 287 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 11/58 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI C +CE C +AIT G ID KC YCG C ++CPVDA Sbjct: 164 DTCIHCGVCEKACREEAITFRDGKLV-----------IDTQKCNYCGRCAKSCPVDAW 210 >gi|163858399|ref|YP_001632697.1| quinol dehydrogenase membrane component [Bordetella petrii DSM 12804] gi|163262127|emb|CAP44429.1| napH [Bordetella petrii] Length = 310 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 20/72 (27%), Gaps = 5/72 (6%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 LR G C C C +ICP R I C CG C + Sbjct: 238 LRVNAAGRAACDDCMDCYSICP-----EPQVIRPALKAAGQDHPVILDADCTTCGRCIDV 292 Query: 113 CPVDAIVEGPNF 124 CP F Sbjct: 293 CPQQVFRMSHRF 304 >gi|46581693|ref|YP_012501.1| pyridine nucleotide-disulfide oxidoreductase [Desulfovibrio vulgaris str. Hildenborough] gi|46451116|gb|AAS97761.1| pyridine nucleotide-disulfide oxidoreductase [Desulfovibrio vulgaris str. Hildenborough] gi|311235329|gb|ADP88183.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Desulfovibrio vulgaris RCH1] Length = 776 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 6/61 (9%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C +CE ICP AI+ R G R +D +CI CG C ACP Sbjct: 718 CRDCGVCETICPQGAIS-----RRDLGEGRFEM-TVDGERCIGCGFCAGACPCGIWNLVE 771 Query: 123 N 123 N Sbjct: 772 N 772 >gi|89073353|ref|ZP_01159877.1| electron transport complex protein RnfB [Photobacterium sp. SKA34] gi|89050840|gb|EAR56314.1| electron transport complex protein RnfB [Photobacterium sp. SKA34] Length = 194 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 27/78 (34%), Gaps = 10/78 (12%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E+ CI C C CP AI + + + +C C LC CP D Sbjct: 108 FIHEDMCIGCTKCIQACPVDAIVGGTK----------SMHTVIKDECTGCDLCVAPCPTD 157 Query: 117 AIVEGPNFEFATETRQEL 134 I P E + +L Sbjct: 158 CIEMIPVKETPDNWKWQL 175 >gi|65318011|ref|ZP_00390970.1| COG3383: Uncharacterized anaerobic dehydrogenase [Bacillus anthracis str. A2012] Length = 500 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + R + Sbjct: 125 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 182 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 I+ C+ CG C CP +A++E Sbjct: 183 WDHGVSINDSSCVSCGQCVTVCPCNALME 211 Score = 37.4 bits (85), Expect = 0.70, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 91 RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 150 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 151 CIACGQCVEVC 161 >gi|313683607|ref|YP_004061345.1| ferredoxin-like protein [Sulfuricurvum kujiense DSM 16994] gi|313156467|gb|ADR35145.1| ferredoxin-like protein [Sulfuricurvum kujiense DSM 16994] Length = 361 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 30/92 (32%), Gaps = 11/92 (11%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + C C C CP A+ S + KCI CG+C++ Sbjct: 242 FFNKQIDFQTCTNCGECTQFCPTDALFPTSDKQGIY---------FSQGKCIGCGICEDI 292 Query: 113 CPVDAIVEGPNFEFAT--ETRQELYYDKERLL 142 C AI F+ + R E E ++ Sbjct: 293 CKPKAIKAKEGFDLVSIAFDRAEQLVHYEMVM 324 >gi|251778577|ref|ZP_04821497.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082892|gb|EES48782.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 362 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 12/63 (19%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ CI C +C+ C AI I + ID KC CGLC CP +A+ Sbjct: 310 NQDACIKCGICKTSCVYDAIDISNE------------LIIDSKKCFGCGLCVTRCPKNAL 357 Query: 119 VEG 121 Sbjct: 358 SMQ 360 >gi|254520089|ref|ZP_05132145.1| iron hydrogenase 1 [Clostridium sp. 7_2_43FAA] gi|226913838|gb|EEH99039.1| iron hydrogenase 1 [Clostridium sp. 7_2_43FAA] Length = 575 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 3/69 (4%) Query: 59 GEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 E+CI C+ C C + I+ C YCG C CP Sbjct: 146 DREKCILCRRCVTSCNDIQKVHAITVANRGFETNISTFSNDSINETNCTYCGQCVAVCPT 205 Query: 116 DAIVEGPNF 124 A+ E ++ Sbjct: 206 GALREKSDY 214 >gi|237808740|ref|YP_002893180.1| putative glutamate synthase (NADPH) small subunit [Tolumonas auensis DSM 9187] gi|237501001|gb|ACQ93594.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Tolumonas auensis DSM 9187] Length = 544 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 28/91 (30%), Gaps = 6/91 (6%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRR 92 + P E+ G + RC +C C A E+ + G+ Sbjct: 455 VVTPEER-EGFDEIIGGLTPEQARYEAARCYSCGNCFECDGCYGACPEEAIIKLGKGSG- 512 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 Y ID KC C C CP AI Sbjct: 513 ---YRIDYDKCTGCSACYNQCPCHAIEMVSE 540 >gi|209695338|ref|YP_002263267.1| electron transport complex protein RnfB [Aliivibrio salmonicida LFI1238] gi|226735410|sp|B6EGH6|RNFB_ALISL RecName: Full=Electron transport complex protein rnfB gi|208009290|emb|CAQ79556.1| electron transport complex protein RnfB [Aliivibrio salmonicida LFI1238] Length = 194 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 27/81 (33%), Gaps = 10/81 (12%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 +S + + E+ CI C C CP AI + + + Sbjct: 93 PSSAHDEEKSIKKIAFIHEDMCIGCTKCIQACPVDAIVGGTK----------ALHTVIEA 142 Query: 102 KCIYCGLCQEACPVDAIVEGP 122 +C C LC CP D I P Sbjct: 143 ECTGCDLCVAPCPTDCIEMIP 163 >gi|184157307|ref|YP_001845646.1| NADH:ubiquinone oxidoreductase subunit RnfB [Acinetobacter baumannii ACICU] gi|332873434|ref|ZP_08441387.1| electron transport complex, RnfABCDGE type, B subunit [Acinetobacter baumannii 6014059] gi|183208901|gb|ACC56299.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Acinetobacter baumannii ACICU] gi|322507192|gb|ADX02646.1| RnfB [Acinetobacter baumannii 1656-2] gi|323517170|gb|ADX91551.1| NADH:ubiquinone oxidoreductase, subunit RnfB [Acinetobacter baumannii TCDC-AB0715] gi|332738380|gb|EGJ69254.1| electron transport complex, RnfABCDGE type, B subunit [Acinetobacter baumannii 6014059] Length = 263 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 28/87 (32%), Gaps = 10/87 (11%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P E + G + E+ CI C C CP AI + + Sbjct: 66 PAETSVWPVQADGRPQRMKAIIREDECIGCTKCINACPVDAIIGSGK----------LMH 115 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPN 123 I C C LC CPVD I + Sbjct: 116 TILTDLCTGCELCIPPCPVDCIDLVED 142 >gi|168212325|ref|ZP_02637950.1| [Fe] hydrogenase [Clostridium perfringens CPE str. F4969] gi|170716012|gb|EDT28194.1| [Fe] hydrogenase [Clostridium perfringens CPE str. F4969] Length = 696 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 13/88 (14%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 EE+CI C C+ IC ++ D CI CG C CP Sbjct: 21 CRDEEKCIKCGSCKNICTD---------YIGVNGHYSLEKTNDTAVCINCGQCANVCPTS 71 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNN 144 +I E ++ + Q+ DK++++ Sbjct: 72 SITEVFDY----KKVQDAISDKDKIVIV 95 >gi|166032538|ref|ZP_02235367.1| hypothetical protein DORFOR_02253 [Dorea formicigenerans ATCC 27755] gi|166026895|gb|EDR45652.1| hypothetical protein DORFOR_02253 [Dorea formicigenerans ATCC 27755] Length = 249 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 31/98 (31%), Gaps = 12/98 (12%) Query: 25 RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84 + F + + F G +P F + CI C C CP I +E Sbjct: 151 KEFCLPRNNLYDRFMSGPVNPIFYKFFVKANAFQANDSCIGCGQCVKKCPLNNIHLEQER 210 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + KC +C C CP +AI G Sbjct: 211 P------------VWGEKCTHCMACICYCPTEAIEYGK 236 >gi|312878981|ref|ZP_07738781.1| molybdopterin oxidoreductase Fe4S4 region [Aminomonas paucivorans DSM 12260] gi|310782272|gb|EFQ22670.1| molybdopterin oxidoreductase Fe4S4 region [Aminomonas paucivorans DSM 12260] Length = 365 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 3/71 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRC---HDGTRRTVRYDIDMIKCIYCGLCQE 111 Y +CI C C C Q+ + H V ++ C++CG C + Sbjct: 145 FYVRDMNKCILCGRCVRSCDWQSGYHAIDFQHRGIHTAINPPVGVKLEDSDCVFCGQCVQ 204 Query: 112 ACPVDAIVEGP 122 ACPV A+VE Sbjct: 205 ACPVGALVEKK 215 >gi|292671026|ref|ZP_06604452.1| pyruvate-ferredoxin oxidoreductase [Selenomonas noxia ATCC 43541] gi|292647343|gb|EFF65315.1| pyruvate-ferredoxin oxidoreductase [Selenomonas noxia ATCC 43541] Length = 1187 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 14/84 (16%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQ------------AITIESGPRCHDGTRRTVRYDID 99 A+ E+CI C C +CP A E + + + I Sbjct: 692 AISVPVWRPEKCIQCNQCSFVCPHATIRPILTTDEELAAAPEGFQSVKSRPAKGLNFTIA 751 Query: 100 MI--KCIYCGLCQEACPVDAIVEG 121 + C+ CG C + CP A+ Sbjct: 752 VSTLDCLGCGNCAQVCPGKALDMT 775 >gi|238792133|ref|ZP_04635768.1| Electron transport complex protein rnfC [Yersinia intermedia ATCC 29909] gi|238728370|gb|EEQ19889.1| Electron transport complex protein rnfC [Yersinia intermedia ATCC 29909] Length = 545 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 1/54 (1%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + CI C LC CPA + + G + ++ CI CG C CP Sbjct: 342 QSCIRCGLCVDACPAG-LLPQQLYWFSRGEEHEKARNHNLFDCIECGACAYVCP 394 >gi|238762650|ref|ZP_04623620.1| Electron transport complex protein rnfC [Yersinia kristensenii ATCC 33638] gi|238699295|gb|EEP92042.1| Electron transport complex protein rnfC [Yersinia kristensenii ATCC 33638] Length = 537 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 1/54 (1%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + CI C LC CPA + + G + ++ CI CG C CP Sbjct: 342 QSCIRCGLCVDACPAG-LLPQQLYWFSRGEEHEKARNHNLFDCIECGACAYVCP 394 >gi|291285962|ref|YP_003502778.1| NADH dehydrogenase (quinone) [Denitrovibrio acetiphilus DSM 12809] gi|290883122|gb|ADD66822.1| NADH dehydrogenase (quinone) [Denitrovibrio acetiphilus DSM 12809] Length = 597 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 37/97 (38%), Gaps = 15/97 (15%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 ++Y F+ + + +K R L + ERC C LC+ CP AIT E Sbjct: 515 TTIKY-FRHEYEAHIKDKKCPA----RECAELIEFVVVNERCKKCGLCKKACPVDAITWE 569 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ID KC+ C C CP +AI Sbjct: 570 KKQFAV----------IDNEKCVKCRECIVNCPFNAI 596 Score = 39.3 bits (90), Expect = 0.16, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 21/51 (41%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + I+ + + + +C CGLC++ACPVDAI Sbjct: 518 KYFRHEYEAHIKDKKCPARECAELIEFVVVNERCKKCGLCKKACPVDAITW 568 >gi|226324705|ref|ZP_03800223.1| hypothetical protein COPCOM_02491 [Coprococcus comes ATCC 27758] gi|225207153|gb|EEG89507.1| hypothetical protein COPCOM_02491 [Coprococcus comes ATCC 27758] Length = 263 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 29/83 (34%), Gaps = 11/83 (13%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P+E+ + CI CK+CE +C + A+ + Sbjct: 191 VPYEQKHLVQCSSKDKGKDVMSVCSVGCIGCKMCEKVCESDAVHVVDNIAH--------- 241 Query: 96 YDIDMIKCIYCGLCQEACPVDAI 118 ID KC CG C E CP I Sbjct: 242 --IDPEKCTNCGKCAEKCPKKII 262 Score = 33.5 bits (75), Expect = 9.1, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 5/70 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCH-----DGTRRTVRYDIDMIKCIYCGLCQEAC 113 +E C AC C A CP I + + H + + + CI C +C++ C Sbjct: 169 DKEACKACGKCIATCPKHLIELVPYEQKHLVQCSSKDKGKDVMSVCSVGCIGCKMCEKVC 228 Query: 114 PVDAIVEGPN 123 DA+ N Sbjct: 229 ESDAVHVVDN 238 >gi|170701515|ref|ZP_02892467.1| dihydroorotate dehydrogenase family protein [Burkholderia ambifaria IOP40-10] gi|170133572|gb|EDT01948.1| dihydroorotate dehydrogenase family protein [Burkholderia ambifaria IOP40-10] Length = 435 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 6/63 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117 ++RCI C LC C + + + +++ +C+ C LC CPV Sbjct: 341 DQDRCIQCGLCHIACEDTSHQAITAEKDGV-----RHFEVVDAECVGCNLCMHVCPVEQC 395 Query: 118 IVE 120 I Sbjct: 396 ITM 398 >gi|153837836|ref|ZP_01990503.1| formate dehydrogenase, alpha subunit [Vibrio parahaemolyticus AQ3810] gi|149748778|gb|EDM59621.1| formate dehydrogenase, alpha subunit [Vibrio parahaemolyticus AQ3810] Length = 1422 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 19/84 (22%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM------------------ 100 RCI+C C C QA+ R +R D Sbjct: 636 DANRCISCGQCIQACREQAVHGVLSFVSDKNGRPALRPDDRPRFRSDEKGVGCSGLTLMG 695 Query: 101 -IKCIYCGLCQEACPVDAIVEGPN 123 KC+ CG+C +ACP A+V+ + Sbjct: 696 DSKCVQCGVCVQACPTGAMVDSRD 719 Score = 33.9 bits (76), Expect = 6.6, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 4/72 (5%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P ++ +G G+ +C+ C +C CP A+ + Sbjct: 673 PDDRPRFRSDEKGVGCSGLTLMGDSKCVQCGVCVQACPTGAMVDSRDRSQGRTEQLKAVD 732 Query: 97 DIDMIKCIYCGL 108 I C YCG+ Sbjct: 733 TI----CTYCGV 740 >gi|56552709|ref|YP_163548.1| RnfABCDGE type eelectron transport complex subunit B [Zymomonas mobilis subsp. mobilis ZM4] gi|241762603|ref|ZP_04760676.1| electron transport complex, RnfABCDGE type, B subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|260753651|ref|YP_003226544.1| electron transport complex, RnfABCDGE type subunit beta [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|56544283|gb|AAV90437.1| electron transport complex, RnfABCDGE type, B subunit [Zymomonas mobilis subsp. mobilis ZM4] gi|241372798|gb|EER62502.1| electron transport complex, RnfABCDGE type, B subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|258553014|gb|ACV75960.1| electron transport complex, RnfABCDGE type, B subunit [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 220 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ CI C C C + AI + + I C C C+ ACP AI Sbjct: 106 HEDLCIGCTACIRDCSSDAIIGAARQ----------VHTIIPDVCHGCSKCETACPTGAI 155 Query: 119 VEGP 122 P Sbjct: 156 EMVP 159 >gi|325265960|ref|ZP_08132646.1| electron transport complex protein RnfB [Kingella denitrificans ATCC 33394] gi|324982598|gb|EGC18224.1| electron transport complex protein RnfB [Kingella denitrificans ATCC 33394] Length = 284 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 10/66 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C C CP AI S + + + +C CGLC CPVD Sbjct: 74 YIDEAVCIGCTACIRACPVDAIMGASK----------LMHTVLADECTGCGLCVPPCPVD 123 Query: 117 AIVEGP 122 I P Sbjct: 124 CIDLLP 129 Score = 37.4 bits (85), Expect = 0.71, Method: Composition-based stats. Identities = 14/35 (40%), Positives = 16/35 (45%) Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + V ID CI C C ACPVDAI+ Sbjct: 62 EHAAPPHQNVVAYIDEAVCIGCTACIRACPVDAIM 96 >gi|323977659|gb|EGB72745.1| dihydroorotate dehydrogenase [Escherichia coli TW10509] Length = 411 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + ++C+ C C C G + + + +T + K Sbjct: 324 VPAEDLDRSYIVYPNINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 378 CVGCLLCGHVCPVGCIDLG 396 >gi|303256259|ref|ZP_07342275.1| ferredoxin hydrogenase [Burkholderiales bacterium 1_1_47] gi|302860988|gb|EFL84063.1| ferredoxin hydrogenase [Burkholderiales bacterium 1_1_47] Length = 450 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 26/73 (35%), Gaps = 10/73 (13%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 FR ++ C+ C C CP AI+ G + I C+ Sbjct: 26 NFRKGELRGIIHINKDNCVGCDTCRKFCPVDAISGGLG----------AIHKIRDDACVS 75 Query: 106 CGLCQEACPVDAI 118 CG C ACP AI Sbjct: 76 CGQCLSACPFGAI 88 >gi|300310950|ref|YP_003775042.1| ferredoxin [4Fe-4S]-type protein [Herbaspirillum seropedicae SmR1] gi|300073735|gb|ADJ63134.1| ferredoxin [4Fe-4S]-type protein [Herbaspirillum seropedicae SmR1] Length = 240 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 26/79 (32%), Gaps = 10/79 (12%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 +P E R E CI C LC CP AI + + + Sbjct: 71 PLNPEHGSEQPRRLAVIDEAVCIGCTLCIQACPVDAIAGAAKQ----------MHTVIDA 120 Query: 102 KCIYCGLCQEACPVDAIVE 120 C C LC CPVD I Sbjct: 121 LCTGCDLCVAPCPVDCISM 139 >gi|167947037|ref|ZP_02534111.1| putative glutamate synthase (NADPH) small subunit [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 379 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 3/63 (4%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 +RC++C C C + G G + RYD +C C +C E CP AI Sbjct: 307 QRCLSCGNCFE-CDGCLGSCPEGAVIKLGPGKRYRYD--YSRCTGCAVCYEQCPCHAIEM 363 Query: 121 GPN 123 P Sbjct: 364 VPE 366 >gi|167750547|ref|ZP_02422674.1| hypothetical protein EUBSIR_01523 [Eubacterium siraeum DSM 15702] gi|167656473|gb|EDS00603.1| hypothetical protein EUBSIR_01523 [Eubacterium siraeum DSM 15702] Length = 495 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 25/71 (35%), Gaps = 9/71 (12%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDG---------TRRTVRYDIDMIKCIYCG 107 + +C+ C C +CP AI P + ID KCI CG Sbjct: 133 HIDKSKCVNCGQCAKVCPYGAILEFKRPCERACKIGAISRATDTSSAAAHIDNDKCISCG 192 Query: 108 LCQEACPVDAI 118 C CP AI Sbjct: 193 ACVYTCPFGAI 203 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 12/64 (18%) Query: 57 PNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + E C C CE +C AIT + + H ID KC+ CG C + CP Sbjct: 101 YDVTEACRGCIAHRCEDVCRMGAITFDEHQKAH----------IDKSKCVNCGQCAKVCP 150 Query: 115 VDAI 118 AI Sbjct: 151 YGAI 154 >gi|319428322|gb|ADV56396.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Shewanella putrefaciens 200] Length = 553 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 30/82 (36%), Gaps = 9/82 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+C C C AICP ++ C+ CGLC+ ACP I Sbjct: 419 NVEKCTLCMSCVAICPTMSLQDGGDKPALH---------FIEQNCVQCGLCEAACPEKVI 469 Query: 119 VEGPNFEFATETRQELYYDKER 140 P F RQ+ + KE Sbjct: 470 SLTPQINFDKAARQQQHTLKEE 491 Score = 38.9 bits (89), Expect = 0.24, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 11/53 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C CPA AI+ + +ID C G C ACP AI Sbjct: 195 CNRCLNFCPADAISSVAKK-----------IEIDPYLCHGAGSCTSACPTGAI 236 >gi|57234357|ref|YP_181590.1| hydrogenase subunit HymB, putative [Dehalococcoides ethenogenes 195] gi|57224805|gb|AAW39862.1| hydrogenase subunit HymB, putative [Dehalococcoides ethenogenes 195] Length = 640 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 10/64 (15%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 AL + ++C AC +C CP AI G + + I+ KCI CG C Sbjct: 557 KALLTFYIDPDKCKACMICARNCPTDAIKGGKG----------LIHTIEQDKCIKCGACL 606 Query: 111 EACP 114 + CP Sbjct: 607 DTCP 610 Score = 37.4 bits (85), Expect = 0.63, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 20/53 (37%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + I++ + + + ID KC C +C CP DAI G Sbjct: 536 KYFRHEYIDHIKNKHCEAGVCKALLTFYIDPDKCKACMICARNCPTDAIKGGK 588 >gi|85713243|ref|ZP_01044269.1| electron transport complex protein RnfB [Idiomarina baltica OS145] gi|85692938|gb|EAQ30910.1| electron transport complex protein RnfB [Idiomarina baltica OS145] Length = 194 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 27/85 (31%), Gaps = 10/85 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E E + E+ CI C C CP AI + + + Sbjct: 90 EAKPLDAAHGEESVKKVAIIREDECIGCTKCIQACPVDAILGAAKQ----------MHTV 139 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPN 123 +C C LC E CPVD I Sbjct: 140 IEHECTGCDLCVEPCPVDCIDMVEI 164 >gi|120600652|ref|YP_965226.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Shewanella sp. W3-18-1] gi|120560745|gb|ABM26672.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella sp. W3-18-1] Length = 553 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 30/82 (36%), Gaps = 9/82 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+C C C AICP ++ C+ CGLC+ ACP I Sbjct: 419 NVEKCTLCMSCVAICPTMSLQDGGDKPALH---------FIEQNCVQCGLCEAACPEKVI 469 Query: 119 VEGPNFEFATETRQELYYDKER 140 P F RQ+ + KE Sbjct: 470 SLTPQINFDKAARQQQHTLKEE 491 Score = 38.9 bits (89), Expect = 0.24, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 11/53 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C CPA AI+ + +ID C G C ACP AI Sbjct: 195 CNRCLNFCPADAISSVAKK-----------IEIDPYLCHGAGSCTSACPTGAI 236 >gi|296399274|gb|ADH10449.1| NADH-plastoquinone oxidoreductase subunit I [Selaginella moellendorffii] Length = 189 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 5/116 (4%) Query: 18 GAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA 77 F + + + TI YP++K S RFRG IA + + P Sbjct: 25 RGFTVTPDHMDRLPITIQYPYDKSIPSERFRGRTHFESDKR-----IAREARVRVRPTNL 79 Query: 78 ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 ++ G +R+ + D + G E P + +E +T R E Sbjct: 80 PVVDWGLGEGMRRKRSRSHSTDPGVRTFRGNRAEYRPTNRSPMTGEYEPSTYDRHE 135 >gi|327398530|ref|YP_004339399.1| glycyl-radical enzyme activating protein family [Hippea maritima DSM 10411] gi|327181159|gb|AEA33340.1| glycyl-radical enzyme activating protein family [Hippea maritima DSM 10411] Length = 298 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 11/77 (14%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++CI C C+A+C AI+ + +I+ +C CG C ++CP +A+ Sbjct: 52 QKCIRCLTCKAVCKEDAISFTNNK-----------IEINTKRCTMCGKCWQSCPTNALEV 100 Query: 121 GPNFEFATETRQELYYD 137 + E +EL D Sbjct: 101 VGQYYKTDELIEELTKD 117 >gi|323698052|ref|ZP_08109964.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfovibrio sp. ND132] gi|323457984|gb|EGB13849.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfovibrio desulfuricans ND132] Length = 1168 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 30/94 (31%), Gaps = 19/94 (20%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------- 92 RG L +E CI C C +CP A+ Sbjct: 672 RGVAILVPEWI-KENCIQCNQCAFVCPHSALRAVLATDDEMKKAPATYETIDAVGKDLKG 730 Query: 93 -TVRYDIDMIKCIYCGLCQEACP--VDAIVEGPN 123 R ++ + C+ CG C + CP A+V P Sbjct: 731 LHFRLQVNSLDCLGCGNCADICPAKEKALVMKPI 764 >gi|313619884|gb|EFR91446.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Listeria innocua FSL S4-378] Length = 837 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 34/104 (32%), Gaps = 16/104 (15%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCH 87 T+ + AL E C C C +CP AI E Sbjct: 290 PPGTAAYEKRGIALEVPEWISENCTMCNECAFVCPHAAIRPILTNEEEMESAPEGFMTRE 349 Query: 88 DGTRRTVRYDID--MIKCIYCGLCQEACPV--DAIVEGPNFEFA 127 + +RY I + C C LC E CP A+V P E A Sbjct: 350 MRGKDGLRYRIQVSPMDCTGCNLCAETCPAKDKALVMKPFEEVA 393 Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 5/80 (6%) Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV--EGPNFEFATETRQ 132 + A + G V I C C C CP AI E E+ Sbjct: 286 SGAYPPGTAAYEKRGIALEVPEWIS-ENCTMCNECAFVCPHAAIRPILTNEEEM--ESAP 342 Query: 133 ELYYDKERLLNNGDRWESEI 152 E + +E +G R+ ++ Sbjct: 343 EGFMTREMRGKDGLRYRIQV 362 >gi|310658216|ref|YP_003935937.1| iron-only hydrogenase catalytic subunit [Clostridium sticklandii DSM 519] gi|308824994|emb|CBH21032.1| putative catalytic subunit of iron-only hydrogenase ([Fe] hydrogenase) [Clostridium sticklandii] Length = 577 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 3/68 (4%) Query: 59 GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQEACPV 115 ++CI C+ CE +C Q + + S T +D I C +CG C CP Sbjct: 147 NMDKCILCRRCETVCNEVQTVNVLSAVGRGFDTVVGTAFDLPIHETTCTFCGQCLAVCPT 206 Query: 116 DAIVEGPN 123 A+ E N Sbjct: 207 AALTEVNN 214 >gi|266623377|ref|ZP_06116312.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium hathewayi DSM 13479] gi|288864843|gb|EFC97141.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium hathewayi DSM 13479] Length = 903 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 15/81 (18%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQ-----AITIESGPRCHDGTR---------RT 93 RG N + CI C C +CP A+T E +G + Sbjct: 680 RGIAVNIPAWN-PDNCIQCNFCSYVCPHAVIRPVAMTAEEAANAPEGMKMLDMTGMPGYK 738 Query: 94 VRYDIDMIKCIYCGLCQEACP 114 + + C CG C CP Sbjct: 739 FAITVSALDCTGCGSCANVCP 759 >gi|255961347|ref|YP_003097529.1| NADH dehydrogenase subunit I [Selaginella moellendorffii] gi|302824513|ref|XP_002993899.1| hypothetical protein SELMODRAFT_137743 [Selaginella moellendorffii] gi|254941519|gb|ACT89034.1| NADH dehydrogenase subunit I [Selaginella moellendorffii] gi|300138266|gb|EFJ05040.1| hypothetical protein SELMODRAFT_137743 [Selaginella moellendorffii] Length = 185 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 24/116 (20%), Positives = 40/116 (34%), Gaps = 5/116 (4%) Query: 18 GAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA 77 F + + + TI YP++K S RFRG IA + + P Sbjct: 21 RGFTVTPDHMDRLPITIQYPYDKSIPSERFRGRTHFESDKR-----IAREARVRVRPTNL 75 Query: 78 ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 ++ G +R+ + D + G E P + +E +T R E Sbjct: 76 PVVDWGLGEGMRRKRSRSHSTDPGVRTFRGNRAEYRPTNRSPMTGEYEPSTYDRHE 131 >gi|237722430|ref|ZP_04552911.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|298481910|ref|ZP_07000099.1| hydrogenase HymB subunit [Bacteroides sp. D22] gi|229448240|gb|EEO54031.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|298271774|gb|EFI13346.1| hydrogenase HymB subunit [Bacteroides sp. D22] Length = 635 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 10/66 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L Y ERCI C LC CPA AI+ + I KCI CG+C Sbjct: 577 LLTYTISPERCIGCHLCAKNCPADAISGL----------VRKPHVIAPDKCIKCGMCMAR 626 Query: 113 CPVDAI 118 C +AI Sbjct: 627 CKFNAI 632 >gi|270308335|ref|YP_003330393.1| glutamate synthase-like protein, gltB-like fragment [Dehalococcoides sp. VS] gi|270154227|gb|ACZ62065.1| glutamate synthase-like protein, gltB-like fragment [Dehalococcoides sp. VS] Length = 500 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 12/89 (13%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 +RCI CK+C C + + + C+ C C CP +A+V Sbjct: 16 DRCIKCKVCITQCSFDTHYYDEDDD---------QIKVRNQNCVGCHRCVTFCPTNALVV 66 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWE 149 N E RQ + E + + + E Sbjct: 67 RNN---PLEYRQNANWTPEMIEDIFKQAE 92 >gi|160887581|ref|ZP_02068584.1| hypothetical protein BACOVA_05603 [Bacteroides ovatus ATCC 8483] gi|156107992|gb|EDO09737.1| hypothetical protein BACOVA_05603 [Bacteroides ovatus ATCC 8483] Length = 635 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 10/66 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L Y ERCI C LC CPA AI+ + I KCI CG+C Sbjct: 577 LLTYTISPERCIGCHLCAKNCPADAISGL----------VRKPHVIAPDKCIKCGMCMAR 626 Query: 113 CPVDAI 118 C +AI Sbjct: 627 CKFNAI 632 >gi|116695680|ref|YP_841256.1| sulfite reductase alpha subunit (flavoprotein) [Ralstonia eutropha H16] gi|113530179|emb|CAJ96526.1| sulfite reductase alpha subunit (flavoprotein) [Ralstonia eutropha H16] Length = 383 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 11/68 (16%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + ++ CI C CE CP AIT + Y +D+ +C +C C Sbjct: 9 ITQHLIDPAICIRCNSCEESCPVGAITHDHN-----------NYVVDVERCNHCRACLPP 57 Query: 113 CPVDAIVE 120 CP AI Sbjct: 58 CPTGAINH 65 Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats. Identities = 13/26 (50%), Positives = 15/26 (57%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPN 123 ID CI C C+E+CPV AI N Sbjct: 14 IDPAICIRCNSCEESCPVGAITHDHN 39 >gi|94986722|ref|YP_594655.1| pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit [Lawsonia intracellularis PHE/MN1-00] gi|94730971|emb|CAJ54334.1| Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, gamma subunit [Lawsonia intracellularis PHE/MN1-00] Length = 1187 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 20/127 (15%), Positives = 33/127 (25%), Gaps = 20/127 (15%) Query: 31 KTTINYPF--EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI-------- 80 + P T+ + A+ + CI C C +CP I Sbjct: 658 PVSSFTPDGIVPLGTAAYEKRAIAIDIPEWIADNCIQCFQCSYVCPHACIRPVLATEEEL 717 Query: 81 --------ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 + +R + C+ CG C + CP RQ Sbjct: 718 IGAPETFVTKDAIGKELKGLKMRIQVYPEDCVGCGSCADVCPSKPKSL--IMMPLETQRQ 775 Query: 133 ELYYDKE 139 E + + Sbjct: 776 EQVINLD 782 >gi|57234074|ref|YP_181843.1| glutamate synthase, alpha subunit, putative [Dehalococcoides ethenogenes 195] gi|57224522|gb|AAW39579.1| glutamate synthase, alpha subunit, putative [Dehalococcoides ethenogenes 195] Length = 500 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 12/89 (13%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 +RCI CK+C C + + + C+ C C CP +A+V Sbjct: 16 DRCIKCKVCITQCSFDTHYYDEDDD---------QIKVRNQNCVGCHRCVTFCPTNALVV 66 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWE 149 N E RQ + E + + + E Sbjct: 67 RNN---PLEYRQNANWTPEMIEDIFKQAE 92 >gi|333004461|gb|EGK23991.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Shigella flexneri VA-6] Length = 1174 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 32/138 (23%), Gaps = 24/138 (17%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPVDA 117 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 118 IVEGPNFEFATETRQELY 135 +RQE Sbjct: 760 RQNPEIKAINMMSRQEHV 777 >gi|330684502|gb|EGG96218.1| molybdopterin oxidoreductase Fe4S4 domain protein [Staphylococcus epidermidis VCU121] Length = 578 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 3/78 (3%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQE 111 Y +CI C C C + R + + I+ C+ CG C Sbjct: 139 FYRYDPNQCILCGRCVEACQDIEVNETISIDWDREHPRVIWDNDVPINESSCVSCGQCAT 198 Query: 112 ACPVDAIVEGPNFEFATE 129 CP +A++E A Sbjct: 199 VCPCNAMMEVNMEGNAGY 216 Score = 38.9 bits (89), Expect = 0.20, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 16/68 (23%), Gaps = 8/68 (11%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAI----TIESGPRCHDGTRRTVRYDIDMIKCIY 105 R C C CE Y D +CI Sbjct: 90 RILEKHMLYCTVCDYNNGDCEIHNTMDEWGLQHQTYEYKEKPYEKDYGPFYRYDPNQCIL 149 Query: 106 CGLCQEAC 113 CG C EAC Sbjct: 150 CGRCVEAC 157 >gi|307298014|ref|ZP_07577818.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermotogales bacterium mesG1.Ag.4.2] gi|306916100|gb|EFN46483.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermotogales bacterium mesG1.Ag.4.2] Length = 1176 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 31/124 (25%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAIT---------------IESGPRCHDGTRR 92 RG L + CI C C +CP AI ES + Sbjct: 676 RGIAVLIPEWQ-PDNCIQCNQCSLVCPHAAIRPFLINEEEEKKAPVAFESIKALGGKSFE 734 Query: 93 TVRYDID--MIKCIYCGLCQEAC--PVDAIVE----------GPNFEFATE-TRQELYYD 137 ++Y I + C CG C + C P +A++ PN+EF+T + ++ + Sbjct: 735 GLKYRIQVSPLDCTGCGNCADICPAPKNALLMKPLESQVEKEVPNWEFSTTISEKKDVMN 794 Query: 138 KERL 141 E L Sbjct: 795 VETL 798 >gi|326790115|ref|YP_004307936.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Clostridium lentocellum DSM 5427] gi|326540879|gb|ADZ82738.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Clostridium lentocellum DSM 5427] Length = 1175 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 28/90 (31%), Gaps = 18/90 (20%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITI----ESGPRCHDGTRRTV------------ 94 A+ E CI C C +CP I E GT T Sbjct: 677 IAIEVPEWEIENCIQCNQCSFVCPHACIRPVLLTEEEQAKAPGTFATKKAIGKGLEGLTY 736 Query: 95 RYDIDMIKCIYCGLCQEACP--VDAIVEGP 122 R + C CG C + CP A+V P Sbjct: 737 RIQVSPYDCTGCGNCADICPAKTKALVMKP 766 >gi|294495379|ref|YP_003541872.1| nitrite and sulphite reductase 4Fe-4S region [Methanohalophilus mahii DSM 5219] gi|292666378|gb|ADE36227.1| nitrite and sulphite reductase 4Fe-4S region [Methanohalophilus mahii DSM 5219] Length = 286 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 30/95 (31%), Gaps = 12/95 (12%) Query: 28 FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH 87 FK T F L ++C C LCE CP AI IE+ Sbjct: 135 FKFAVTGCPSSCMKPQENDFGIMGGLEPEWID-DKCTRCGLCETTCPVDAIKIEND---- 189 Query: 88 DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 D KC CG C CP A +E Sbjct: 190 -------TLYFDEEKCNLCGDCVFVCPTSAWIEVK 217 Score = 37.8 bits (86), Expect = 0.49, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 21/51 (41%), Gaps = 3/51 (5%) Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 CP+ + + G D KC CGLC+ CPVDAI + Sbjct: 142 CPSSCMKPQENDFGIMGGLEPEWID---DKCTRCGLCETTCPVDAIKIEND 189 >gi|258404551|ref|YP_003197293.1| response regulator receiver protein [Desulfohalobium retbaense DSM 5692] gi|257796778|gb|ACV67715.1| response regulator receiver protein [Desulfohalobium retbaense DSM 5692] Length = 1142 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 7/69 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR-------YDIDMIKCIYCGLCQE 111 +CI+C C +CP + + Y +D+ C C C E Sbjct: 114 DAHKCISCGQCSTVCPVRIPDTFNAGLGERAAIYLPVPHNIPNQYVVDLAHCTRCWKCAE 173 Query: 112 ACPVDAIVE 120 ACP A+ Sbjct: 174 ACPTGAVDF 182 Score = 41.6 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 22/58 (37%), Gaps = 9/58 (15%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 C C+ C +CP A +++ + +D I C CG C CP A Sbjct: 1071 HSLCSLCQACVNVCPYGARSLDWE---------NEQIVVDEILCQGCGACTAVCPNSA 1119 >gi|168236356|ref|ZP_02661414.1| dihydroorotate dehydrogenase family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|197290436|gb|EDY29791.1| dihydroorotate dehydrogenase family protein [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 411 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 24/79 (30%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + +E+C+ C C C G + + + K Sbjct: 324 IPAEDLDRSYIVYPQINQEKCVGCGRCYISCYDG------GHQAMGWDEHSRTPHCNTEK 377 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 378 CVGCLLCGHVCPVACIDLG 396 >gi|160876722|ref|YP_001556038.1| formate dehydrogenase subunit alpha [Shewanella baltica OS195] gi|160862244|gb|ABX50778.1| formate dehydrogenase, alpha subunit [Shewanella baltica OS195] gi|315268922|gb|ADT95775.1| formate dehydrogenase, alpha subunit [Shewanella baltica OS678] Length = 1421 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 24/75 (32%), Gaps = 15/75 (20%) Query: 59 GEERCIACKLCEAICPAQAITI---------------ESGPRCHDGTRRTVRYDIDMIKC 103 RCI+C C +C Q+ S R + KC Sbjct: 643 DANRCISCGKCVDVCQLQSGHCAIQFAHDSYQALPQDISETIERRAPRVGFSASMADSKC 702 Query: 104 IYCGLCQEACPVDAI 118 + CG C + CP A+ Sbjct: 703 VQCGNCVQVCPTGAL 717 Score = 34.3 bits (77), Expect = 5.1, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 5/50 (10%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL-C 109 +C+ C C +CP A+ R D T I C YCG+ C Sbjct: 700 SKCVQCGNCVQVCPTGALVDARDKRQGDETPLKTASTI----CTYCGVGC 745 >gi|110805757|ref|YP_689277.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 5 str. 8401] gi|110615305|gb|ABF03972.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 5 str. 8401] Length = 1174 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 32/138 (23%), Gaps = 24/138 (17%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPVDA 117 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 118 IVEGPNFEFATETRQELY 135 +RQE Sbjct: 760 RQNPEIKAINMMSRQEHV 777 >gi|24113170|ref|NP_707680.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 2a str. 301] gi|30062869|ref|NP_837040.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 2a str. 2457T] gi|24052159|gb|AAN43387.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 2a str. 301] gi|30041117|gb|AAP16847.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 2a str. 2457T] gi|281601226|gb|ADA74210.1| putative oxidoreductase, Fe-S subunit [Shigella flexneri 2002017] gi|313650586|gb|EFS14989.1| pyruvate:ferredoxin oxidoreductase [Shigella flexneri 2a str. 2457T] gi|332757689|gb|EGJ88020.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Shigella flexneri 4343-70] gi|332767619|gb|EGJ97812.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Shigella flexneri 2930-71] gi|333004774|gb|EGK24296.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Shigella flexneri K-218] gi|333018639|gb|EGK37933.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Shigella flexneri K-304] Length = 1174 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 32/138 (23%), Gaps = 24/138 (17%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPVDA 117 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 118 IVEGPNFEFATETRQELY 135 +RQE Sbjct: 760 RQNPEIKAINMMSRQEHV 777 >gi|332534028|ref|ZP_08409877.1| electron transport complex protein RnfC [Pseudoalteromonas haloplanktis ANT/505] gi|332036465|gb|EGI72933.1| electron transport complex protein RnfC [Pseudoalteromonas haloplanktis ANT/505] Length = 606 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 2/92 (2%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C C CPA + + + ++ CI CG C CP I Sbjct: 377 CIRCSACADACPAS-LLPQQLQWFAKSKEYDKLQEHNLFDCIECGACAYVCP-SEIPLVQ 434 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVR 154 + A +E DK + +R+++ R Sbjct: 435 YYRIAKVEIKEQQADKIKADRAKERFDARKER 466 >gi|331000390|ref|ZP_08324069.1| hydrogenase, Fe-only [Parasutterella excrementihominis YIT 11859] gi|329571980|gb|EGG53652.1| hydrogenase, Fe-only [Parasutterella excrementihominis YIT 11859] Length = 447 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 26/73 (35%), Gaps = 10/73 (13%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 FR ++ C+ C C CP AI+ G + I C+ Sbjct: 23 NFRKGELRGIIHINKDNCVGCDTCRKFCPVDAISGGLG----------AIHKIRDDACVS 72 Query: 106 CGLCQEACPVDAI 118 CG C ACP AI Sbjct: 73 CGQCLSACPFGAI 85 >gi|304382390|ref|ZP_07364890.1| ferredoxin [Prevotella marshii DSM 16973] gi|304336452|gb|EFM02688.1| ferredoxin [Prevotella marshii DSM 16973] Length = 259 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 34/94 (36%), Gaps = 13/94 (13%) Query: 47 FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 R R + ERCI C C +CP Q IT G + CI C Sbjct: 179 IRNALTDRPFRVNNERCIRCGRCATVCPMQNITGGKGEKPIW---------HHTDDCISC 229 Query: 107 GLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140 C CPV AI G T + + YY ++ Sbjct: 230 FACYHGCPVHAIDYGHR----TRKKGQYYYGRKD 259 >gi|291530234|emb|CBK95819.1| Iron only hydrogenase large subunit, C-terminal domain [Eubacterium siraeum 70/3] gi|291557046|emb|CBL34163.1| Iron only hydrogenase large subunit, C-terminal domain [Eubacterium siraeum V10Sc8a] Length = 495 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 25/71 (35%), Gaps = 9/71 (12%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDG---------TRRTVRYDIDMIKCIYCG 107 + +C+ C C +CP AI P + ID KCI CG Sbjct: 133 HIDKSKCVNCGQCAKVCPYGAILEFKRPCERACKIGAISRATDTSSAAAHIDNDKCISCG 192 Query: 108 LCQEACPVDAI 118 C CP AI Sbjct: 193 ACVYTCPFGAI 203 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 12/64 (18%) Query: 57 PNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + E C C CE +C AIT + + H ID KC+ CG C + CP Sbjct: 101 YDVTEACRGCIAHRCEDVCRMGAITFDEHQKAH----------IDKSKCVNCGQCAKVCP 150 Query: 115 VDAI 118 AI Sbjct: 151 YGAI 154 >gi|226195339|ref|ZP_03790928.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia pseudomallei Pakistan 9] gi|225932541|gb|EEH28539.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia pseudomallei Pakistan 9] Length = 189 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 26/81 (32%), Gaps = 10/81 (12%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 + E A E+ CI C LC CP AI + I Sbjct: 66 PLNQAHGVERARPVAFIDEQLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVAE 115 Query: 102 KCIYCGLCQEACPVDAIVEGP 122 C C LC CPVD I P Sbjct: 116 LCTGCDLCVPPCPVDCIAMIP 136 >gi|170756783|ref|YP_001782925.1| [Fe] hydrogenase [Clostridium botulinum B1 str. Okra] gi|169121995|gb|ACA45831.1| [Fe] hydrogenase [Clostridium botulinum B1 str. Okra] Length = 497 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 7/69 (10%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIKCIYCGLC 109 + +C C LC+ +CP AI P R I+ CI CG C Sbjct: 135 YIDQNKCRECGLCKKVCPYNAIVEVMRPCKKVCPTGALEINPDDKRAMIEKENCINCGAC 194 Query: 110 QEACPVDAI 118 +CP AI Sbjct: 195 MASCPFGAI 203 >gi|204929087|ref|ZP_03220230.1| dihydroorotate dehydrogenase family protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204321631|gb|EDZ06830.1| dihydroorotate dehydrogenase family protein [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 411 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + +E+C+ C C C G + + + + K Sbjct: 324 IPAEDLDRSYIVYPRINQEKCVGCGRCYISCYDG------GHQAMEWDEHSRTPHCNTEK 377 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 378 CVGCLLCGHVCPVACIDLG 396 >gi|167918137|ref|ZP_02505228.1| ferredoxin [Burkholderia pseudomallei BCC215] Length = 176 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 26/81 (32%), Gaps = 10/81 (12%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 + E A E+ CI C LC CP AI + I Sbjct: 66 PLNQAHGVERARPVAFIDEQLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVAE 115 Query: 102 KCIYCGLCQEACPVDAIVEGP 122 C C LC CPVD I P Sbjct: 116 LCTGCDLCVPPCPVDCIAMIP 136 >gi|167718713|ref|ZP_02401949.1| ferredoxin [Burkholderia pseudomallei DM98] gi|167814883|ref|ZP_02446563.1| ferredoxin [Burkholderia pseudomallei 91] Length = 165 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 26/81 (32%), Gaps = 10/81 (12%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 + E A E+ CI C LC CP AI + I Sbjct: 66 PLNQAHGVERARPVAFIDEQLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVAE 115 Query: 102 KCIYCGLCQEACPVDAIVEGP 122 C C LC CPVD I P Sbjct: 116 LCTGCDLCVPPCPVDCIAMIP 136 >gi|154492842|ref|ZP_02032468.1| hypothetical protein PARMER_02481 [Parabacteroides merdae ATCC 43184] gi|154087147|gb|EDN86192.1| hypothetical protein PARMER_02481 [Parabacteroides merdae ATCC 43184] Length = 1182 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 27/82 (32%), Gaps = 16/82 (19%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG A N CI C C +CP A + + Sbjct: 676 RGVAAFVPVWNE-ANCIQCNQCAYVCPHASIRPFVLNDEEQKGANFPMLDVKAPATMKGM 734 Query: 94 V-RYDIDMIKCIYCGLCQEACP 114 R +D++ C+ CG C + CP Sbjct: 735 KFRMQVDVMDCLGCGNCADICP 756 >gi|167893415|ref|ZP_02480817.1| ferredoxin [Burkholderia pseudomallei 7894] Length = 163 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 26/81 (32%), Gaps = 10/81 (12%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 + E A E+ CI C LC CP AI + I Sbjct: 66 PLNQAHGVERARPVAFIDEQLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVAE 115 Query: 102 KCIYCGLCQEACPVDAIVEGP 122 C C LC CPVD I P Sbjct: 116 LCTGCDLCVPPCPVDCIAMIP 136 >gi|322371908|ref|ZP_08046450.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Haladaptatus paucihalophilus DX253] gi|320548330|gb|EFW90002.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Haladaptatus paucihalophilus DX253] Length = 594 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 25/85 (29%), Gaps = 16/85 (18%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 EKG R +R + C A+ R D Sbjct: 45 EKGEFPNTNRNFSVMRCNHCDDSPCTDVCPVTAL----------------WEREDGIVDF 88 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPN 123 D +CI C C + CP DA+ P Sbjct: 89 DPERCIGCKACMQGCPYDALYIDPE 113 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 29/91 (31%), Gaps = 17/91 (18%) Query: 56 YPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRRTVRYDIDMIKCIYCGL-- 108 + RCI C C C + G + +++C +C Sbjct: 9 FVIDNRRCIGCHACTVACKTEHDDPIGVNKTWVKYIEKGEFPNTNRNFSVMRCNHCDDSP 68 Query: 109 CQEACPVDAIVEGPNFEFATETRQELYYDKE 139 C + CPV A+ E R++ D + Sbjct: 69 CTDVCPVTALWE----------REDGIVDFD 89 Score = 41.2 bits (95), Expect = 0.053, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 4/64 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ERCI CK C CP A+ I+ + C CP DAI Sbjct: 89 DPERCIGCKACMQGCPYDALYIDPETSTAAKCNYCSHRVDTGRE----PACVTVCPEDAI 144 Query: 119 VEGP 122 + G Sbjct: 145 IAGD 148 >gi|307719238|ref|YP_003874770.1| iron-sulfur cluster-binding protein [Spirochaeta thermophila DSM 6192] gi|306532963|gb|ADN02497.1| iron-sulfur cluster-binding protein [Spirochaeta thermophila DSM 6192] Length = 371 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 12/60 (20%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 +RC C C +CP IT++ P +CIYC C E CP +AI Sbjct: 309 DRCRRCGYCARVCPVSCITMDGLPVWD------------YSRCIYCYCCHENCPHEAIEL 356 Score = 40.5 bits (93), Expect = 0.077, Method: Composition-based stats. Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 2/39 (5%) Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVEG--PNFEFA 127 R + +C CG C CPV I P ++++ Sbjct: 299 WVRSRPRVIEDRCRRCGYCARVCPVSCITMDGLPVWDYS 337 >gi|302670768|ref|YP_003830728.1| ech hydrogenase subunit F EchF [Butyrivibrio proteoclasticus B316] gi|302395241|gb|ADL34146.1| ech hydrogenase subunit F EchF [Butyrivibrio proteoclasticus B316] Length = 166 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 36/110 (32%), Gaps = 17/110 (15%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 L T E RG N + C+ C LC CP AIT++ Sbjct: 9 TILHNLVSKPKTRKVEKE---YPTGTRGHVE-----NDMDVCVLCGLCSIKCPTHAITVD 60 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 + + I + CI C C + CP + G F+ E + Sbjct: 61 ---------KVAKTWSIRPMSCIQCRCCVDNCPKKCLSMGLRFQEPGEEK 101 >gi|294054685|ref|YP_003548343.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Coraliomargarita akajimensis DSM 45221] gi|293614018|gb|ADE54173.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Coraliomargarita akajimensis DSM 45221] Length = 1188 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 27/129 (20%), Gaps = 26/129 (20%) Query: 31 KTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAICPA------------- 75 + P S + A E CI C C CP Sbjct: 656 PVSAFRPDGVWDVGTSQWEKRNIAQEIPIWDPEVCIQCNKCVQACPHAAIRSNFVDPDAL 715 Query: 76 -QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLCQEACP--------VDAIVEGPNF 124 A + +Y I C C LC CP AI Sbjct: 716 NDAPDCFRSVDFKVREHKGAKYIIQVAPEDCTGCSLCVAVCPAKNKRNPREKAINMRDQE 775 Query: 125 EFATETRQE 133 + R Sbjct: 776 PLLADERAN 784 >gi|167737726|ref|ZP_02410500.1| ferredoxin [Burkholderia pseudomallei 14] Length = 173 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 26/81 (32%), Gaps = 10/81 (12%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 + E A E+ CI C LC CP AI + I Sbjct: 66 PLNQAHGVERARPVAFIDEQLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVAE 115 Query: 102 KCIYCGLCQEACPVDAIVEGP 122 C C LC CPVD I P Sbjct: 116 LCTGCDLCVPPCPVDCIAMIP 136 >gi|218781191|ref|YP_002432509.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfatibacillum alkenivorans AK-01] gi|218762575|gb|ACL05041.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfatibacillum alkenivorans AK-01] Length = 390 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 11/64 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++C+ C CE CP QAI I+ ID+ KCI CGLC AC A+ Sbjct: 297 DSDKCVLCGKCEKRCPTQAIKIKKDAV-----------KIDLGKCIGCGLCAAACKPGAL 345 Query: 119 VEGP 122 P Sbjct: 346 TMAP 349 Score = 37.8 bits (86), Expect = 0.59, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 21/42 (50%) Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + PR D + R +D KC+ CG C++ CP AI + Sbjct: 280 AAPRPADFVQSNFRAALDSDKCVLCGKCEKRCPTQAIKIKKD 321 >gi|154150339|ref|YP_001403957.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Candidatus Methanoregula boonei 6A8] gi|153998891|gb|ABS55314.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Methanoregula boonei 6A8] Length = 368 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 25/68 (36%), Gaps = 11/68 (16%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C C +CP AIT+ R + ID CI C C CPV AI Sbjct: 195 CTGCGKCTEVCPKSAITL-----------RNKKSVIDKDLCIGCFECMTVCPVHAIEVDW 243 Query: 123 NFEFATET 130 E T Sbjct: 244 ETEIPLFT 251 Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 16/62 (25%), Gaps = 3/62 (4%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI---DMIKCIYCGLCQEACPVDAIVE 120 K E AI + +R C CG C E CP AI Sbjct: 153 THFKGHEVAGFGGAIKNLAMGCAPPAGKRAQHQAKPFSMPAVCTGCGKCTEVCPKSAITL 212 Query: 121 GP 122 Sbjct: 213 RN 214 >gi|153808447|ref|ZP_01961115.1| hypothetical protein BACCAC_02741 [Bacteroides caccae ATCC 43185] gi|149128769|gb|EDM19986.1| hypothetical protein BACCAC_02741 [Bacteroides caccae ATCC 43185] Length = 1182 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 28/81 (34%), Gaps = 15/81 (18%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG A N E CI C C +CP A + T Sbjct: 676 RGVAAFVPEWN-PENCIQCNKCAYVCPHASIRPFVLDAEEQKGAQFEQLKAVGKVFDGMT 734 Query: 94 VRYDIDMIKCIYCGLCQEACP 114 R +D++ C+ CG C + CP Sbjct: 735 FRIQVDVLDCLGCGNCADICP 755 >gi|150399311|ref|YP_001323078.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanococcus vannielii SB] gi|150012014|gb|ABR54466.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus vannielii SB] Length = 352 Score = 47.4 bits (111), Expect = 6e-04, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 37/92 (40%), Gaps = 1/92 (1%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 EK R R + C+ C +C ICP AI + G + D Sbjct: 7 DEKDGVIEISREGVEKRVLKWEDCVCVGCGICNEICPTNAIEMGPLGAIFRGDIDAPKLD 66 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 I KC+ CG+C ACP DA+ N + TE Sbjct: 67 IS-EKCVLCGMCACACPFDAVTLKINDKLNTE 97 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 33/71 (46%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R L ++ C+ C +C CPA AI + + +D+ C+YC Sbjct: 139 RKTLVLGEINIKKDACVLCGICADYCPADAIELVPNKMNALNLKPIADIKVDLDACVYCK 198 Query: 108 LCQEACPVDAI 118 +C++ACP +AI Sbjct: 199 VCEKACPHNAI 209 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 8/75 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV--------RYDIDMIKCIYCGLCQ 110 + C+ CK+CE CP AI + + +ID C+ CG C Sbjct: 190 DLDACVYCKVCEKACPHNAIEAICYKCPLASRIKKPELYSEIKGQTNIDKDLCVSCGWCA 249 Query: 111 EACPVDAIVEGPNFE 125 CPV+AI FE Sbjct: 250 NICPVEAITVEKPFE 264 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 1/65 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +++C+ C+ CE +CP AI +E T +I C+ CG+C + CP DAI Sbjct: 111 NQKKCVLCEQCELVCPQSAIDVE-RTIPERKTLVLGEINIKKDACVLCGICADYCPADAI 169 Query: 119 VEGPN 123 PN Sbjct: 170 ELVPN 174 Score = 42.4 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 8/83 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P E + F GE + + C AC C ++CP +A+ P+ + + Sbjct: 252 CPVEAITVEKPFEGELLI-----DNDTCGACGACISVCPCKALVF---PKPEKAADKVPK 303 Query: 96 YDIDMIKCIYCGLCQEACPVDAI 118 ++ CI CG C ++CPVDA+ Sbjct: 304 VSVNPAVCILCGACAQSCPVDAL 326 Score = 39.7 bits (91), Expect = 0.12, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 5/84 (5%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR--- 95 E G FRG+ + + E+C+ C +C CP A+T++ + + + + Sbjct: 48 EMGPLGAIFRGDIDAPKL-DISEKCVLCGMCACACPFDAVTLKINDKLNTEMPQYPKIKR 106 Query: 96 -YDIDMIKCIYCGLCQEACPVDAI 118 +++ KC+ C C+ CP AI Sbjct: 107 GIELNQKKCVLCEQCELVCPQSAI 130 >gi|307354477|ref|YP_003895528.1| cobyrinic acid ac-diamide synthase [Methanoplanus petrolearius DSM 11571] gi|307157710|gb|ADN37090.1| Cobyrinic acid ac-diamide synthase [Methanoplanus petrolearius DSM 11571] Length = 283 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 25/98 (25%), Gaps = 17/98 (17%) Query: 31 KTTINYPFEKGSTSPRFRGEHALRRY------PNGEERCIACKLCEAICPAQAITIESGP 84 T+ + F R + C C C C AI + Sbjct: 30 PVTLVDCDVEVPNLHLFFESEPEIRDVFTTIPKVDTDLCTLCGDCGNFCRYGAIAVLKD- 88 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 R I C CG C CP AI E P Sbjct: 89 ----------RVLIFEKMCHACGGCMIVCPEKAISETP 116 >gi|295106918|emb|CBL04461.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [Gordonibacter pamelaeae 7-10-1-b] Length = 1171 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 36/124 (29%), Gaps = 23/124 (18%) Query: 29 KAKTTINYP-----FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG 83 + + P FE+G+ + RG CI C C +CP I + Sbjct: 652 RLPVSAFIPHVDGQFEQGAAAYEKRGVAVSVPAW-DAATCIQCNQCAFVCPHATIRPFAL 710 Query: 84 PRCHDGTRRTVRYD----------------IDMIKCIYCGLCQEACPVDAIVEGP-NFEF 126 I + C+ C +C CP D++ P E Sbjct: 711 TEAEAAAAPAATTLVPAKGKAAAGLQYTLAISPLDCMGCSVCVNVCPSDSLSMVPQEDEL 770 Query: 127 ATET 130 A + Sbjct: 771 AQQD 774 >gi|269122203|ref|YP_003310380.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Sebaldella termitidis ATCC 33386] gi|268616081|gb|ACZ10449.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Sebaldella termitidis ATCC 33386] Length = 1178 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 33/105 (31%), Gaps = 20/105 (19%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ--------------AITIESG 83 FE G+T+ RG E CI C C +CP A + Sbjct: 666 FENGTTAYEKRGIAVNVPEWV-PENCIQCNQCAFVCPHAVIRPFLINEEELAAAPEGLTT 724 Query: 84 PRCHDGTRRTVRYDIDMI--KCIYCGLCQEACPVD---AIVEGPN 123 + ++Y I + C CG C CP AI P Sbjct: 725 IKAMGKGLEGLQYKIQVSTLDCTGCGSCVNVCPAPKGKAIKMEPI 769 >gi|251792842|ref|YP_003007568.1| electron transport complex protein RnfC [Aggregatibacter aphrophilus NJ8700] gi|247534235|gb|ACS97481.1| electron transport complex protein RnfC [Aggregatibacter aphrophilus NJ8700] Length = 843 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 35/108 (32%), Gaps = 5/108 (4%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CP + + + + + CI CG+C CP Sbjct: 372 PEEEKSCIRCSACSDACPVK-LMPQQLYWFARSEDHEKAEEYSLKDCIECGICAYVCPSH 430 Query: 117 AIVEGPNFEFATETRQELYYDKERL-LNNGDRWESEIVRNIVTDSPYR 163 I F E K +L R+E R + + R Sbjct: 431 -IPLIQYFRQEKAKIWE-IKHKAKLAEEAKIRFEQRQAR-LEREEQER 475 >gi|254456760|ref|ZP_05070188.1| ferredoxin [Campylobacterales bacterium GD 1] gi|207085552|gb|EDZ62836.1| ferredoxin [Campylobacterales bacterium GD 1] Length = 747 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 1/83 (1%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 + R CI C+ C +C + + + + D++ C Sbjct: 130 DQSREIKDWGLINYDPSLCILCEKCVHVCNEVIGDDAIDVQFGGYSSTIIPKNSDVLDCT 189 Query: 105 YCGLCQEACPVDAIVEGPNFEFA 127 +CG C CPV A+V NF+++ Sbjct: 190 FCGECIAVCPVGALV-SSNFKYS 211 >gi|169343832|ref|ZP_02864829.1| [Fe] hydrogenase [Clostridium perfringens C str. JGS1495] gi|169297952|gb|EDS80043.1| [Fe] hydrogenase [Clostridium perfringens C str. JGS1495] Length = 696 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 13/88 (14%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 EE+CI C C+ IC ++ D CI CG C CP Sbjct: 21 CRDEEKCIKCGSCKNICTD---------YIGVNGHYSLEKTNDTAVCINCGQCANVCPTS 71 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNN 144 +I E ++ + Q+ DK++++ Sbjct: 72 SITEVFDY----KKVQDAISDKDKIVIV 95 >gi|167901877|ref|ZP_02489082.1| ferredoxin [Burkholderia pseudomallei NCTC 13177] Length = 177 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 26/81 (32%), Gaps = 10/81 (12%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 + E A E+ CI C LC CP AI + I Sbjct: 66 PLNQAHGVERARPVAFIDEQLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVAE 115 Query: 102 KCIYCGLCQEACPVDAIVEGP 122 C C LC CPVD I P Sbjct: 116 LCTGCDLCVPPCPVDCIAMIP 136 >gi|149912038|ref|ZP_01900631.1| electron transport complex protein RnfC [Moritella sp. PE36] gi|149804899|gb|EDM64934.1| electron transport complex protein RnfC [Moritella sp. PE36] Length = 931 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 2/66 (3%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C C +CP + + D +++ CI CG C CP I Sbjct: 380 CIRCGECSEVCPVD-LLPQQLHWYSQAKDVKKLNDYNLMDCIECGACSYVCPSQ-IPLVH 437 Query: 123 NFEFAT 128 + A Sbjct: 438 QYRIAK 443 >gi|153814130|ref|ZP_01966798.1| hypothetical protein RUMTOR_00339 [Ruminococcus torques ATCC 27756] gi|317499935|ref|ZP_07958171.1| NADH dehydrogenase [Lachnospiraceae bacterium 8_1_57FAA] gi|331087842|ref|ZP_08336767.1| hypothetical protein HMPREF1025_00350 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848526|gb|EDK25444.1| hypothetical protein RUMTOR_00339 [Ruminococcus torques ATCC 27756] gi|316898652|gb|EFV20687.1| NADH dehydrogenase [Lachnospiraceae bacterium 8_1_57FAA] gi|330409537|gb|EGG88978.1| hypothetical protein HMPREF1025_00350 [Lachnospiraceae bacterium 3_1_46FAA] Length = 639 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 37/97 (38%), Gaps = 15/97 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 LRY F+ + + +K L +Y ++C C LC CPA AI Sbjct: 556 TLRY-FRDEYIAHIVDKKCPAGVC----KDLLQYKIDPDKCKGCTLCARTCPADAIIG-- 608 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + + I+ KC+ CG C E C AI Sbjct: 609 --------KVKEVHMINPEKCLKCGACMEKCRFGAIY 637 >gi|37526280|ref|NP_929624.1| electron transport complex protein RnfC [Photorhabdus luminescens subsp. laumondii TTO1] gi|36785711|emb|CAE14696.1| Electron transport complex protein RnfC [Photorhabdus luminescens subsp. laumondii TTO1] Length = 852 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 1/52 (1%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 CI C LC CPA+ + + G D ++ CI CG C CP Sbjct: 377 CIRCGLCVEACPAR-LLPQQLYWFSRGQEHEKARDHNLFDCIECGACAYVCP 427 Score = 37.8 bits (86), Expect = 0.54, Method: Composition-based stats. Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 10/45 (22%) Query: 100 MIKCIYCGLCQEACPVDAIVE-------GPNFEFATETRQELYYD 137 CI CGLC EACP + + G E A R +D Sbjct: 374 EEACIRCGLCVEACPARLLPQQLYWFSRGQEHEKA---RDHNLFD 415 >gi|332760202|gb|EGJ90498.1| putative pyruvate-flavodoxin oxidoreductase domain protein [Shigella flexneri K-671] Length = 593 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 32/138 (23%), Gaps = 24/138 (17%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 65 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 118 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPVDA 117 P AI + P + + C C LC E CP Sbjct: 119 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 178 Query: 118 IVEGPNFEFATETRQELY 135 +RQE Sbjct: 179 RQNPEIKAINMMSRQEHV 196 >gi|323698185|ref|ZP_08110097.1| ferredoxin-dependent glutamate synthase [Desulfovibrio sp. ND132] gi|323458117|gb|EGB13982.1| ferredoxin-dependent glutamate synthase [Desulfovibrio desulfuricans ND132] Length = 544 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 30/102 (29%), Gaps = 15/102 (14%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------ITIESGPRCHDGTRR 92 E+ T + + C C C ++CP A + P + Sbjct: 4 ERPITPSTLSRKDLPWQIKWDINTCTKCGRCTSVCPVNAIELGVFRKRDVKPPMGLSAKP 63 Query: 93 TVRYDIDMI---------KCIYCGLCQEACPVDAIVEGPNFE 125 T + CI C +C CP +AI ++ Sbjct: 64 TTEFSTFYGIRQRTDPAYACIGCAMCNMVCPNNAIEPTRQYD 105 >gi|307354476|ref|YP_003895527.1| cobyrinic acid ac-diamide synthase [Methanoplanus petrolearius DSM 11571] gi|307157709|gb|ADN37089.1| Cobyrinic acid ac-diamide synthase [Methanoplanus petrolearius DSM 11571] Length = 289 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 25/73 (34%), Gaps = 11/73 (15%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 H L E+C+ C C C A+ I+ Y + + C CG+C Sbjct: 56 FHGLDISVIDTEKCVQCGACLENCRFGAVEIKEDQ-----------YSVRPLLCEGCGVC 104 Query: 110 QEACPVDAIVEGP 122 CP AI Sbjct: 105 DYVCPSGAISMKK 117 >gi|237715807|ref|ZP_04546288.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D1] gi|262407422|ref|ZP_06083970.1| NADH oxidoreductase (quinone), F subunit [Bacteroides sp. 2_1_22] gi|293371348|ref|ZP_06617785.1| protein HymB [Bacteroides ovatus SD CMC 3f] gi|229443454|gb|EEO49245.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D1] gi|262354230|gb|EEZ03322.1| NADH oxidoreductase (quinone), F subunit [Bacteroides sp. 2_1_22] gi|292633708|gb|EFF52263.1| protein HymB [Bacteroides ovatus SD CMC 3f] gi|295087526|emb|CBK69049.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Bacteroides xylanisolvens XB1A] Length = 635 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 10/66 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L Y ERCI C LC CPA AI+ + I KCI CG+C Sbjct: 577 LLTYTISPERCIGCHLCAKNCPADAISGL----------VRKPHVIAPDKCIKCGMCMAR 626 Query: 113 CPVDAI 118 C +AI Sbjct: 627 CKFNAI 632 >gi|219852823|ref|YP_002467255.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanosphaerula palustris E1-9c] gi|219547082|gb|ACL17532.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanosphaerula palustris E1-9c] Length = 673 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 28/80 (35%), Gaps = 9/80 (11%) Query: 45 PRFRGEHALRRYP--NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 P G+ L Y EE+C C +C +CP A+ + + K Sbjct: 582 PIHMGQVELEPYFAMCIEEKCAGCGMCVNLCPYSALALVEKD-------GRTVMQVTEAK 634 Query: 103 CIYCGLCQEACPVDAIVEGP 122 C CG C CP AI Sbjct: 635 CKGCGTCGGFCPGGAIWMNH 654 Score = 38.5 bits (88), Expect = 0.34, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 18/48 (37%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 C + + + + + Y ID C+ CGLC EAC Sbjct: 273 CPVVKPNVFEMGMAPRKAIYINHPQVVPLIYKIDFDSCVKCGLCVEAC 320 >gi|206890760|ref|YP_002249173.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit A, selenocysteine-containing [Thermodesulfovibrio yellowstonii DSM 11347] gi|206742698|gb|ACI21755.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit A, selenocysteine-containing [Thermodesulfovibrio yellowstonii DSM 11347] Length = 666 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 7/62 (11%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++C +C +C +CP AI IE I+ C CG+C ACP AI Sbjct: 594 DRDKCSSCGVCVPLCPYSAIRIEEYKGKEKAY-------IEPALCAGCGVCASACPSRAI 646 Query: 119 VE 120 Sbjct: 647 KF 648 Score = 35.5 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 11/23 (47%), Positives = 13/23 (56%) Query: 92 RTVRYDIDMIKCIYCGLCQEACP 114 + ID KCI CG+C E CP Sbjct: 233 KKKAKYIDWDKCIGCGVCTEICP 255 >gi|206575958|ref|YP_002237566.1| pyruvate-flavodoxin oxidoreductase [Klebsiella pneumoniae 342] gi|206565016|gb|ACI06792.1| pyruvate-flavodoxin oxidoreductase [Klebsiella pneumoniae 342] Length = 1171 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 25/83 (30%), Gaps = 14/83 (16%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDG---------TR 91 + AL + C C C +CP AI + E G Sbjct: 674 WEKRGIALEVPVWQPDGCTQCNQCAFVCPHAAIRPALLSPEEQDTAPAGLLSKPAQGAKD 733 Query: 92 RTVRYDIDMIKCIYCGLCQEACP 114 I + C CG C E+CP Sbjct: 734 YHYHLAISPLDCSGCGNCVESCP 756 >gi|152999871|ref|YP_001365552.1| FAD linked oxidase domain-containing protein [Shewanella baltica OS185] gi|151364489|gb|ABS07489.1| FAD linked oxidase domain protein [Shewanella baltica OS185] Length = 934 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 6/78 (7%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 E + I + + D + KCI CG C++ CP A+ P AT Sbjct: 509 EGMLNPGVILNDDSTVHVKNIKPCPVVDDFVDKCIECGFCEKTCPTSALNFSPRQRIATL 568 Query: 130 TRQELYYDKERLLNNGDR 147 R+ ERL +GD+ Sbjct: 569 -RE-----IERLEQSGDK 580 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 26/75 (34%), Gaps = 16/75 (21%) Query: 57 PNGEERCIACKLCEAICPAQAITI----------------ESGPRCHDGTRRTVRYDIDM 100 + ++CI C CE CP A+ +SG + R + Sbjct: 536 DDFVDKCIECGFCEKTCPTSALNFSPRQRIATLREIERLEQSGDKAAAAEMRAAAKYDVV 595 Query: 101 IKCIYCGLCQEACPV 115 C C LC ACPV Sbjct: 596 DTCAACQLCTIACPV 610 >gi|126740147|ref|ZP_01755836.1| formate dehydrogenase, alpha subunit [Roseobacter sp. SK209-2-6] gi|126718602|gb|EBA15315.1| formate dehydrogenase, alpha subunit [Roseobacter sp. SK209-2-6] Length = 924 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 5/65 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID----MIKCIYCGLCQEACP 114 + CI+C LC C + + G +DI C+ CG C +ACP Sbjct: 147 NLDACISCNLCVRACR-EVQVNDVIGMAGRGHDAYPVFDISDPMGQSSCVACGECVQACP 205 Query: 115 VDAIV 119 A++ Sbjct: 206 TGALM 210 >gi|53804899|ref|YP_113273.1| putative glutamate synthase (NADPH) small subunit [Methylococcus capsulatus str. Bath] gi|53758660|gb|AAU92951.1| pyridine nucleotide-disulphide oxidoreductase family protein [Methylococcus capsulatus str. Bath] Length = 546 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 5/64 (7%) Query: 61 ERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 RC +C C A ++ + G RY D +C C +C E CP AI Sbjct: 484 RRCFSCGNCFECDGCYGACPEQAIVKLGPG----KRYRYDYDRCTGCAVCHEQCPAHAIE 539 Query: 120 EGPN 123 Sbjct: 540 MISE 543 >gi|20089516|ref|NP_615591.1| hypothetical protein MA0628 [Methanosarcina acetivorans C2A] gi|19914426|gb|AAM04071.1| conserved hypothetical protein [Methanosarcina acetivorans C2A] Length = 379 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 29/74 (39%), Gaps = 10/74 (13%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G++ + +C C C C +A+ + + Y I+ KCI C Sbjct: 299 GKYYTIYPRINQRKCTQCGTCYLNCSPKAVERQ----------KNGTYRINPEKCILCYC 348 Query: 109 CQEACPVDAIVEGP 122 C+E CP DA+ Sbjct: 349 CRELCPNDAVEIKK 362 >gi|45358808|ref|NP_988365.1| tungsten containing formylmethanofuran dehydrogenase subunit F [Methanococcus maripaludis S2] gi|45047674|emb|CAF30801.1| tungsten containing formylmethanofuran dehydrogenase, subunit F [Methanococcus maripaludis S2] Length = 352 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 32/71 (45%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R L ++ C+ C +C CPA AI + ID+ C+YC Sbjct: 139 RKSLVLGEITIKKDDCVLCGICAEYCPADAIELIPNDMNALSLNPIADIKIDLDACVYCK 198 Query: 108 LCQEACPVDAI 118 +C++ACP +AI Sbjct: 199 VCEKACPHNAI 209 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 37/95 (38%), Gaps = 8/95 (8%) Query: 36 YPFEKGSTSPRFRGEHALRRYPN-------GEERCIACKLCEAICPAQAITIESGPRCHD 88 PF+ S + + +YP + +C+ C+ CE +CP Q Sbjct: 81 CPFDAVKLSINDKPITEMPQYPKIKRGIELNQSKCVLCEQCELVCP-QCAIDVEREVPER 139 Query: 89 GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + I C+ CG+C E CP DAI PN Sbjct: 140 KSLVLGEITIKKDDCVLCGICAEYCPADAIELIPN 174 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 35/96 (36%), Gaps = 5/96 (5%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 E R R + C+ C +C ICP AI + G + D Sbjct: 7 DENDGVIEISRSGVEKRVLKWDDCTCVGCGICSEICPTSAIEMGPLGAIFKGDIDAPKLD 66 Query: 98 IDMIKCIYCGLCQEACPVDA----IVEGPNFEFATE 129 I KC+ CG+C ACP DA I + P E Sbjct: 67 IS-EKCVLCGMCACACPFDAVKLSINDKPITEMPQY 101 Score = 42.4 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 35/101 (34%), Gaps = 11/101 (10%) Query: 36 YPFEKGSTSPRFRGEHALRRYPN---GEERCIACKLCEAICPAQAITIE--------SGP 84 P + P +L + + C+ CK+CE CP AI Sbjct: 164 CPADAIELIPNDMNALSLNPIADIKIDLDACVYCKVCEKACPHNAIEAICYKCPLASKIK 223 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 + + +ID C+ CG C CP DAI FE Sbjct: 224 KPELYGEIKGQTNIDKELCVSCGWCANICPADAIEVEKPFE 264 Score = 41.6 bits (96), Expect = 0.040, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 8/83 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + F GE + E C AC C ++CP A+ P+ + Sbjct: 252 CPADAIEVEKPFEGELII-----DEPACNACGACISVCPCNALVF---PQPEKQGDKVPN 303 Query: 96 YDIDMIKCIYCGLCQEACPVDAI 118 ++ CI CG C +CPVDA+ Sbjct: 304 VVVNQDVCILCGACTHSCPVDAL 326 Score = 39.3 bits (90), Expect = 0.20, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 8/64 (12%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 +E C++C C ICPA AI +E ID C CG C CP + Sbjct: 236 NIDKELCVSCGWCANICPADAIEVEKPFEGEL--------IIDEPACNACGACISVCPCN 287 Query: 117 AIVE 120 A+V Sbjct: 288 ALVF 291 Score = 39.3 bits (90), Expect = 0.20, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 5/84 (5%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC----HDGTRRTV 94 E G F+G+ + + E+C+ C +C CP A+ + + + Sbjct: 48 EMGPLGAIFKGDIDAPKL-DISEKCVLCGMCACACPFDAVKLSINDKPITEMPQYPKIKR 106 Query: 95 RYDIDMIKCIYCGLCQEACPVDAI 118 +++ KC+ C C+ CP AI Sbjct: 107 GIELNQSKCVLCEQCELVCPQCAI 130 >gi|28900340|ref|NP_799995.1| putative formate dehydrogenase subunit alpha [Vibrio parahaemolyticus RIMD 2210633] gi|260362126|ref|ZP_05775122.1| putative formate dehydrogenase, alpha subunit [Vibrio parahaemolyticus K5030] gi|260877296|ref|ZP_05889651.1| putative formate dehydrogenase [Vibrio parahaemolyticus AN-5034] gi|260898333|ref|ZP_05906829.1| putative formate dehydrogenase [Vibrio parahaemolyticus Peru-466] gi|28808651|dbj|BAC61828.1| putative formate dehydrogenase, alpha subunit [Vibrio parahaemolyticus RIMD 2210633] gi|308085116|gb|EFO34811.1| putative formate dehydrogenase [Vibrio parahaemolyticus Peru-466] gi|308090720|gb|EFO40415.1| putative formate dehydrogenase [Vibrio parahaemolyticus AN-5034] gi|308113817|gb|EFO51357.1| putative formate dehydrogenase, alpha subunit [Vibrio parahaemolyticus K5030] Length = 1422 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 19/84 (22%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM------------------ 100 RCI+C C C QA+ R +R D Sbjct: 636 DANRCISCGQCIQACREQAVHGVLSFVSDKNGRPALRPDDRPRFRSDEKGVGCSGLTLMG 695 Query: 101 -IKCIYCGLCQEACPVDAIVEGPN 123 KC+ CG+C +ACP A+V+ + Sbjct: 696 DSKCVQCGVCVQACPTGAMVDSRD 719 Score = 33.9 bits (76), Expect = 6.9, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 24/72 (33%), Gaps = 4/72 (5%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P ++ +G G+ +C+ C +C CP A+ + Sbjct: 673 PDDRPRFRSDEKGVGCSGLTLMGDSKCVQCGVCVQACPTGAMVDSRDRSQGRTEQLKAVD 732 Query: 97 DIDMIKCIYCGL 108 I C YCG+ Sbjct: 733 TI----CTYCGV 740 >gi|89073352|ref|ZP_01159876.1| electron transport complex protein RnfC [Photobacterium sp. SKA34] gi|89050839|gb|EAR56313.1| electron transport complex protein RnfC [Photobacterium sp. SKA34] Length = 762 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 37/104 (35%), Gaps = 9/104 (8%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C C +CP+ + + + ++ CI CG C CP I Sbjct: 379 CIRCSACADVCPSS-LLPQQLQWYAKDQNYDKCEEYNLQDCIECGACAYVCP-SEIPLVQ 436 Query: 123 NFEFAT---ETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + A R + + ER R+E++ R + D R Sbjct: 437 YYRQAKAEIWARSQDEMNAERARQ---RFEAKQAR-MERDKAER 476 >gi|170717801|ref|YP_001784864.1| electron transporter subunit RnfB [Haemophilus somnus 2336] gi|168825930|gb|ACA31301.1| electron transport complex, RnfABCDGE type, B subunit [Haemophilus somnus 2336] Length = 196 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 25/80 (31%), Gaps = 10/80 (12%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 S F + + EE CI C C CP AI + + I Sbjct: 93 PSGNFEQDPIPKVAFINEEMCIGCTKCIQACPVDAIIGTNK----------AMHTIIADL 142 Query: 103 CIYCGLCQEACPVDAIVEGP 122 C C LC CP D I Sbjct: 143 CTGCELCVAPCPTDCISMIN 162 >gi|94309960|ref|YP_583170.1| ferredoxin [Cupriavidus metallidurans CH34] gi|93353812|gb|ABF07901.1| electron transport complex, RnfABCDGE type, B subunit [Cupriavidus metallidurans CH34] Length = 279 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 21/60 (35%), Gaps = 10/60 (16%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C LC CP AI + + C C LC CPVD I P Sbjct: 91 CIGCTLCIQACPVDAIVGAPKQ----------MHTVLPDWCTGCDLCVTPCPVDCIEMIP 140 Score = 38.2 bits (87), Expect = 0.40, Method: Composition-based stats. Identities = 13/22 (59%), Positives = 15/22 (68%) Query: 97 DIDMIKCIYCGLCQEACPVDAI 118 I+ CI C LC +ACPVDAI Sbjct: 85 RIEESLCIGCTLCIQACPVDAI 106 >gi|299146440|ref|ZP_07039508.1| protein HymB [Bacteroides sp. 3_1_23] gi|298516931|gb|EFI40812.1| protein HymB [Bacteroides sp. 3_1_23] Length = 635 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 10/66 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L Y ERCI C LC CPA AI+ + I KCI CG+C Sbjct: 577 LLTYTISPERCIGCHLCAKNCPADAISGL----------VRKPHVIAPDKCIKCGMCMAR 626 Query: 113 CPVDAI 118 C +AI Sbjct: 627 CKFNAI 632 >gi|295111540|emb|CBL28290.1| electron transport complex, RnfABCDGE type, B subunit [Synergistetes bacterium SGP1] Length = 277 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 5/70 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGP-----RCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 E+C+ C C + CP +T+ C + + I CI CGLC C Sbjct: 171 DREQCVGCGACVSACPKDVLTLIPQTSDVVVACGSHWKGPAVRRVCSIGCIGCGLCARVC 230 Query: 114 PVDAIVEGPN 123 P AI + Sbjct: 231 PAGAITMDRD 240 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 11/59 (18%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 CI C LC +CPA AIT++ ID KC CGLC + CP I G Sbjct: 220 CIGCGLCARVCPAGAITMDRDLAV-----------IDPAKCTNCGLCAQKCPAKCIETG 267 Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 10/61 (16%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C +C AI + +D +C+ CG C ACP D + P Sbjct: 145 CIGFGTCTKVCNFDAIFMGPDGLPV----------VDREQCVGCGACVSACPKDVLTLIP 194 Query: 123 N 123 Sbjct: 195 Q 195 >gi|260892081|ref|YP_003238178.1| formate dehydrogenase, alpha subunit [Ammonifex degensii KC4] gi|260864222|gb|ACX51328.1| formate dehydrogenase, alpha subunit [Ammonifex degensii KC4] Length = 898 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 3/69 (4%) Query: 59 GEERCIACKLCEAICPA---QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 +CI C LC +C +A+ + ++ C++CG C CPV Sbjct: 146 DMNKCILCGLCVRVCNEIMGKAVIDFAYRGVRTKITPPFELPLEKAGCVFCGNCVAVCPV 205 Query: 116 DAIVEGPNF 124 A+ P + Sbjct: 206 GALFPKPMW 214 Score = 33.5 bits (75), Expect = 9.1, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 22/84 (26%), Gaps = 8/84 (9%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIAC---KLC-----EAICPAQAITIESGPRCHDG 89 + R N E C+ C C + E R + Sbjct: 77 ETESPAVRHARYTLIELLLANHPEDCLTCERTGSCVLQDLAYRYGVRRTRFEGEKRNYPI 136 Query: 90 TRRTVRYDIDMIKCIYCGLCQEAC 113 DM KCI CGLC C Sbjct: 137 EDSNPFIVRDMNKCILCGLCVRVC 160 >gi|242240653|ref|YP_002988834.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Dickeya dadantii Ech703] gi|242132710|gb|ACS87012.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Dickeya dadantii Ech703] Length = 1177 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 29/127 (22%), Gaps = 26/127 (20%) Query: 31 KTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88 + P + + A C C C A CP AI + P Sbjct: 655 PVSALPPDGTWPVGTTRWEKRNIAEEIPLWKPALCTQCNHCVAACPHSAIRAKVVPADAM 714 Query: 89 ----------------GTRRTVRYDIDMIKCIYCGLCQEACPV--------DAIVEGPNF 124 + + C C LC E CP AI P Sbjct: 715 AGAPASLQSLEVKARDMRGQKYVLQVAPEDCTGCNLCVEVCPAKDRQNPDIKAINMEPRL 774 Query: 125 EFATETR 131 E + Sbjct: 775 EHVATEK 781 >gi|256810707|ref|YP_003128076.1| protein of unknown function DUF362 [Methanocaldococcus fervens AG86] gi|256793907|gb|ACV24576.1| protein of unknown function DUF362 [Methanocaldococcus fervens AG86] Length = 356 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 15/93 (16%) Query: 28 FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH 87 FK T+ + + + + +C+ C++CE +CP AI Sbjct: 274 FKKPATVFLNSILPPQIIKIIFNFTIPKPKINKSKCLRCRICEKVCPVNAINNLK----- 328 Query: 88 DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ID KCI C C E CP +AI Sbjct: 329 ----------IDRKKCINCYCCHEMCPYNAIDL 351 >gi|254786925|ref|YP_003074354.1| electron transport complex, RnfABCDGE type, B subunit [Teredinibacter turnerae T7901] gi|237685549|gb|ACR12813.1| electron transport complex, RnfABCDGE type, B subunit [Teredinibacter turnerae T7901] Length = 200 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 10/62 (16%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C CP AI + + + +C C LC E CPVD I Sbjct: 120 DECIGCTKCIQACPVDAILGAAKQ----------MHTVIGSECTGCDLCVEPCPVDCIEM 169 Query: 121 GP 122 P Sbjct: 170 RP 171 Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 2/49 (4%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + A ++S ++ I +CI C C +ACPVDAI Sbjct: 91 ANLLDVDAPDLDSEHGEASDVKKVAF--IREDECIGCTKCIQACPVDAI 137 >gi|238752179|ref|ZP_04613660.1| Electron transport complex protein rnfC [Yersinia rohdei ATCC 43380] gi|238709550|gb|EEQ01787.1| Electron transport complex protein rnfC [Yersinia rohdei ATCC 43380] Length = 541 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 1/54 (1%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + CI C LC CPA + + G + ++ CI CG C CP Sbjct: 342 QACIRCGLCVDACPAG-LLPQQLYWFSRGEEHEKARNHNLFDCIECGACAYVCP 394 >gi|219667455|ref|YP_002457890.1| formate dehydrogenase, subunit alpha [Desulfitobacterium hafniense DCB-2] gi|219537715|gb|ACL19454.1| formate dehydrogenase, alpha subunit [Desulfitobacterium hafniense DCB-2] Length = 893 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 7/87 (8%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYD 97 E+ LR +CI C C C Q ++ + ++ +D Sbjct: 128 ERRELPLDDSNPFILR----DPNKCILCGKCVRACEEIQGRSVLDFFKRGFDSQVGPAFD 183 Query: 98 IDMIK--CIYCGLCQEACPVDAIVEGP 122 + + C++CG C CPV A+VE Sbjct: 184 VPYSESECVFCGSCVSVCPVGALVEKK 210 >gi|212635175|ref|YP_002311700.1| electron transport complex protein RnfC [Shewanella piezotolerans WP3] gi|212556659|gb|ACJ29113.1| Electron transport complex, RnfABCDGE type, C subunit [Shewanella piezotolerans WP3] Length = 917 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 37/111 (33%), Gaps = 11/111 (9%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 CI C C CPAQ + + ++ CI CG C CP I Sbjct: 379 PCIRCGECAVACPAQ-LLPQQLFWHAQAQEYDKAASFNLNDCIECGCCSYVCP-SDIPLV 436 Query: 122 PNFEFA-------TETRQELYYDKERLLNNGDRWESEIVR--NIVTDSPYR 163 + A +E +++ K+R R + E N ++ R Sbjct: 437 EYYRVAKSALRSQSEEKKQADLAKQRFDARQQRLQDEKTARENKAKEAAER 487 >gi|209515499|ref|ZP_03264364.1| dihydroorotate dehydrogenase family protein [Burkholderia sp. H160] gi|209503966|gb|EEA03957.1| dihydroorotate dehydrogenase family protein [Burkholderia sp. H160] Length = 426 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 6/76 (7%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + +ERCI C LC C + + R +++ C+ Sbjct: 328 QYLNLNYDIKARIDQERCIQCGLCHIACEDTSHQAITATRDGQ-----RHFEVVDANCVG 382 Query: 106 CGLCQEACPV-DAIVE 120 C LC CPV I Sbjct: 383 CNLCMHVCPVDQCITM 398 >gi|170760141|ref|YP_001788137.1| dihydropyrimidine dehydrogenase [Clostridium botulinum A3 str. Loch Maree] gi|169407130|gb|ACA55541.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum A3 str. Loch Maree] Length = 411 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 33/110 (30%), Gaps = 7/110 (6%) Query: 15 EFVGAFFLCLRY-FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + + ++ F+ + K + EE C+ C C C Sbjct: 295 DMIEGLSYYMKEKGFEKLEDMVGLANKNIIPAEDLDRGYIVYPKFDEENCVGCGRCYISC 354 Query: 74 PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 G + + + ++ C+ C LC CP+ I +G Sbjct: 355 YDG------GHQAIKWDGKNRKPILEKENCVGCHLCANVCPIQCISKGEI 398 >gi|168216086|ref|ZP_02641711.1| [Fe] hydrogenase [Clostridium perfringens NCTC 8239] gi|182381892|gb|EDT79371.1| [Fe] hydrogenase [Clostridium perfringens NCTC 8239] Length = 696 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 13/88 (14%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 EE+CI C C+ IC ++ D+ CI CG C CP Sbjct: 21 CRDEEKCIKCGSCKNICTD---------YIGVNGHYSLEKTNDIAVCINCGQCANVCPTS 71 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNN 144 +I E ++ + Q+ DK++++ Sbjct: 72 SITEVFDY----KKVQDAISDKDKIVIV 95 >gi|152979395|ref|YP_001345024.1| electron transport complex protein RnfC [Actinobacillus succinogenes 130Z] gi|171704327|sp|A6VQ42|RNFC_ACTSZ RecName: Full=Electron transport complex protein rnfC gi|150841118|gb|ABR75089.1| electron transport complex, RnfABCDGE type, C subunit [Actinobacillus succinogenes 130Z] Length = 703 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/132 (18%), Positives = 38/132 (28%), Gaps = 22/132 (16%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEER----CIACKLCEAICPAQAITIESGPRCHDGTR 91 P + + A + + CI C C CP + + Sbjct: 347 VPDLRAPITKTANCLLAPDHFEYDPQATEQACIRCSACSDACPVH-LMPQQMYWYARAED 405 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 ++ CI CGLC CP I F RQE K ++ W+ E Sbjct: 406 HEKSNQYQLMDCIECGLCAYVCPSH-IPLIQYF------RQE----KAKI------WDIE 448 Query: 152 IVRNIVTDSPYR 163 ++ R Sbjct: 449 AKARKSEEAKIR 460 >gi|77464661|ref|YP_354165.1| NAD-dependent formate dehydrogenase, alpha subunit [Rhodobacter sphaeroides 2.4.1] gi|77389079|gb|ABA80264.1| NAD-dependent formate dehydrogenase, alpha subunit [Rhodobacter sphaeroides 2.4.1] Length = 960 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 29/92 (31%), Gaps = 4/92 (4%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDID 99 + + + +CI C C C A+TI+ + Sbjct: 162 PQWMAKDESNPYFTYDPSKCIVCSRCVRACEEVQGTFALTIDGRGFDSRVSAGMASDSFL 221 Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 C+ CG C +ACP + E E T R Sbjct: 222 TSDCVSCGACVQACPTATLQEKSVIEIGTPER 253 >gi|127514064|ref|YP_001095261.1| FAD linked oxidase domain-containing protein [Shewanella loihica PV-4] gi|126639359|gb|ABO25002.1| FAD linked oxidase domain protein [Shewanella loihica PV-4] Length = 934 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 9/91 (9%) Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 + I + + D + +CI CG C++ CP A+ P AT R Sbjct: 511 LLNPGVILNDDANVHVKNIKPCPVVDDFVDRCIECGFCEKTCPTSALNFTPRQRIATL-R 569 Query: 132 QELYYDKERLLNNGDRWESEIVRNIVTDSPY 162 + RL +GD+ + + + Y Sbjct: 570 E-----IARLEASGDK---QAAEEMRAAAKY 592 Score = 38.2 bits (87), Expect = 0.45, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 27/76 (35%), Gaps = 18/76 (23%) Query: 57 PNGEERCIACKLCEAICPAQAITIES-----------------GPRCHDGTRRTVRYDID 99 + +RCI C CE CP A+ + + R +YD+ Sbjct: 536 DDFVDRCIECGFCEKTCPTSALNFTPRQRIATLREIARLEASGDKQAAEEMRAAAKYDVV 595 Query: 100 MIKCIYCGLCQEACPV 115 C C LC ACPV Sbjct: 596 -DTCAACQLCTIACPV 610 >gi|325262177|ref|ZP_08128915.1| putative pyruvate formate-lyase-activating enzyme [Clostridium sp. D5] gi|324033631|gb|EGB94908.1| putative pyruvate formate-lyase-activating enzyme [Clostridium sp. D5] Length = 296 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 11/60 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERC+ C C ++CP+ A + + KCI CG C E C +A+ Sbjct: 53 ERCVQCGACGSVCPSHAHIFDENKHL-----------FEPEKCIRCGACAEVCCTEALEM 101 >gi|260171115|ref|ZP_05757527.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D2] gi|315919435|ref|ZP_07915675.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D2] gi|313693310|gb|EFS30145.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. D2] Length = 635 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 10/66 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L Y ERCI C LC CPA AI+ + I KCI CG+C Sbjct: 577 LLTYTISPERCIGCHLCAKNCPADAISGL----------VRKPHVIAPDKCIKCGMCMAR 626 Query: 113 CPVDAI 118 C +AI Sbjct: 627 CKFNAI 632 >gi|271499269|ref|YP_003332294.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Dickeya dadantii Ech586] gi|270342824|gb|ACZ75589.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Dickeya dadantii Ech586] Length = 1177 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 23/127 (18%), Positives = 30/127 (23%), Gaps = 26/127 (20%) Query: 31 KTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88 + P + + A E C C C A CP AI + P Sbjct: 655 PVSALPPDGTWPVGTTQWEKRNIAEAIPLWKPELCTQCNHCVAACPHSAIRAKVVPAEAM 714 Query: 89 ----------------GTRRTVRYDIDMIKCIYCGLCQEACPV--------DAIVEGPNF 124 + + C C LC E CP AI P Sbjct: 715 ADAPASLQSLDVKARDMRGQKYVLQVAPEDCTGCNLCVEVCPAKDRQNPEIKAINMEPRL 774 Query: 125 EFATETR 131 E + Sbjct: 775 EHVATEK 781 >gi|224583312|ref|YP_002637110.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224467839|gb|ACN45669.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 411 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + +E+C+ C C C G + + + + K Sbjct: 324 IPAEDLDRSYIVYPRINQEKCVGCGRCYISCYDG------GHQAMEWDEHSRTPHCNTEK 377 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 378 CVGCLLCGHVCPVACIDLG 396 >gi|254479744|ref|ZP_05093027.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Carboxydibrachium pacificum DSM 12653] gi|214034317|gb|EEB75108.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Carboxydibrachium pacificum DSM 12653] Length = 817 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 40/117 (34%), Gaps = 28/117 (23%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTRRTV 94 G+ + RG + CI C C +CP AI T E +G + Sbjct: 392 PGTAAYEKRGIAVDVPEWQ-IDNCIQCNQCAFVCPHAAIRPFLLTEEEVKNAPEGFKVKK 450 Query: 95 -----------RYDIDMIKCIYCGLCQEACP--VDAIVEGP---------NFEFATE 129 R + ++ C CG+C CP A+V P N+E+A Sbjct: 451 AIGKGFEGLYYRIQVSVLDCTGCGVCVNECPAKEKALVMKPLETQLHEAKNWEYAMT 507 >gi|171320519|ref|ZP_02909546.1| dihydroorotate dehydrogenase family protein [Burkholderia ambifaria MEX-5] gi|171094239|gb|EDT39319.1| dihydroorotate dehydrogenase family protein [Burkholderia ambifaria MEX-5] Length = 435 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 6/63 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117 ++RCI C LC C + + + +++ +C+ C LC CPV Sbjct: 341 DQDRCIQCGLCHIACEDTSHQAITAEKDGV-----RHFEVVDAECVGCNLCMHVCPVEQC 395 Query: 118 IVE 120 I Sbjct: 396 ITM 398 >gi|167580299|ref|ZP_02373173.1| ferredoxin [Burkholderia thailandensis TXDOH] Length = 177 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 23/64 (35%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ CI C LC CP AI + I C C LC CPVD I Sbjct: 83 DEQLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVAELCTGCDLCVPPCPVDCI 132 Query: 119 VEGP 122 P Sbjct: 133 AMIP 136 Score = 35.1 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 14/21 (66%), Positives = 15/21 (71%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C LC +ACPVDAI Sbjct: 82 IDEQLCIGCTLCMQACPVDAI 102 >gi|147920950|ref|YP_685242.1| pyruvate:ferredoxin oxidoreductase, delta subunit [uncultured methanogenic archaeon RC-I] gi|110620638|emb|CAJ35916.1| pyruvate:ferredoxin oxidoreductase, delta subunit [uncultured methanogenic archaeon RC-I] Length = 95 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 6/93 (6%) Query: 28 FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH 87 FK + T G++ G + +E+CI CK C CP A + Sbjct: 4 FKQRLTTGLVAMPGTSMQYHTGGWRTYKAVISQEKCIGCKRCADSCPDGAPFECA----- 58 Query: 88 DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + ++ I+ C CG+C CPVDAI Sbjct: 59 -HDGKKKKFCINYDYCKGCGVCAYECPVDAIEM 90 >gi|28898877|ref|NP_798482.1| electron transport complex protein RnfB [Vibrio parahaemolyticus RIMD 2210633] gi|260362455|ref|ZP_05775396.1| electron transport complex protein RnfB [Vibrio parahaemolyticus K5030] gi|260879450|ref|ZP_05891805.1| electron transport complex protein RnfB [Vibrio parahaemolyticus AN-5034] gi|260897153|ref|ZP_05905649.1| electron transport complex protein RnfB [Vibrio parahaemolyticus Peru-466] gi|260902710|ref|ZP_05911105.1| electron transport complex protein RnfB [Vibrio parahaemolyticus AQ4037] gi|33301642|sp|Q87MX3|RNFB_VIBPA RecName: Full=Electron transport complex protein rnfB gi|28807096|dbj|BAC60366.1| RnfB-related protein [Vibrio parahaemolyticus RIMD 2210633] gi|308087155|gb|EFO36850.1| electron transport complex protein RnfB [Vibrio parahaemolyticus Peru-466] gi|308093524|gb|EFO43219.1| electron transport complex protein RnfB [Vibrio parahaemolyticus AN-5034] gi|308109013|gb|EFO46553.1| electron transport complex protein RnfB [Vibrio parahaemolyticus AQ4037] gi|308113332|gb|EFO50872.1| electron transport complex protein RnfB [Vibrio parahaemolyticus K5030] Length = 198 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 25/84 (29%), Gaps = 10/84 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 + S E+ CI C C CP AI + + + Sbjct: 90 VEPEESAHDLDSKVPTVAFIHEDMCIGCTKCIQACPVDAIVGGTK----------AVHTV 139 Query: 99 DMIKCIYCGLCQEACPVDAIVEGP 122 +C C LC CP D I P Sbjct: 140 IKDECTGCDLCVAPCPTDCIEMIP 163 >gi|126173591|ref|YP_001049740.1| FAD linked oxidase domain-containing protein [Shewanella baltica OS155] gi|125996796|gb|ABN60871.1| FAD linked oxidase domain protein [Shewanella baltica OS155] Length = 934 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 6/78 (7%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 E + I + + D + KCI CG C++ CP A+ P AT Sbjct: 509 EGMLNPGVILNDDSTVHVKNIKPCPVVDDFVDKCIECGFCEKTCPTSALNFSPRQRIATL 568 Query: 130 TRQELYYDKERLLNNGDR 147 R+ ERL +GD+ Sbjct: 569 -RE-----IERLEQSGDK 580 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 26/75 (34%), Gaps = 16/75 (21%) Query: 57 PNGEERCIACKLCEAICPAQAITI----------------ESGPRCHDGTRRTVRYDIDM 100 + ++CI C CE CP A+ +SG + R + Sbjct: 536 DDFVDKCIECGFCEKTCPTSALNFSPRQRIATLREIERLEQSGDKAAAAEMRAAAKYDVV 595 Query: 101 IKCIYCGLCQEACPV 115 C C LC ACPV Sbjct: 596 DTCAACQLCTIACPV 610 >gi|317133223|ref|YP_004092537.1| hydrogenase, Fe-only [Ethanoligenens harbinense YUAN-3] gi|315471202|gb|ADU27806.1| hydrogenase, Fe-only [Ethanoligenens harbinense YUAN-3] Length = 580 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 31/95 (32%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93 ++ P+ + + L R + +C+ C I + + Sbjct: 119 LDLPYRREMPVSEWNKSFPLIRDFSKCIKCMRCVQVCDKIQDMNIWDIANTGSRTTVDVS 178 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 ++ C CG C CPV A+ E + + A Sbjct: 179 QNRKMEESDCTLCGQCITHCPVGALRERDDTDKAF 213 >gi|317047961|ref|YP_004115609.1| electron transport complex, RnfABCDGE type subunit C [Pantoea sp. At-9b] gi|316949578|gb|ADU69053.1| electron transport complex, RnfABCDGE type, C subunit [Pantoea sp. At-9b] Length = 758 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 32/105 (30%), Gaps = 18/105 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ CI C C CPA+ + + G + CI CG C CP Sbjct: 374 EEQSCIRCSACADACPAKLLPQQLY-WYSQGGDHDKARAHHIDDCIECGACAYVCP---- 428 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 N RQE K L ++ ++ R Sbjct: 429 ---SNIPLVQYYRQE----KAELRAI------DLEAKRTAEAKAR 460 >gi|223986454|ref|ZP_03636457.1| hypothetical protein HOLDEFILI_03769 [Holdemania filiformis DSM 12042] gi|223961577|gb|EEF66086.1| hypothetical protein HOLDEFILI_03769 [Holdemania filiformis DSM 12042] Length = 364 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 2/67 (2%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+CI C LC++ CP G G + + +D C C C + CP A+ Sbjct: 254 EPEKCIHCGLCDSTCPDMVFQFFPGE--LKGRKTMLNRGLDYRFCKGCLRCVDICPTHAL 311 Query: 119 VEGPNFE 125 G E Sbjct: 312 TRGEEKE 318 >gi|147669302|ref|YP_001214120.1| pyruvate ferredoxin oxidoreductase, delta subunit [Dehalococcoides sp. BAV1] gi|270308044|ref|YP_003330102.1| 2-oxoacid:ferredoxin oxidoreductase, delta subunit [Dehalococcoides sp. VS] gi|289432568|ref|YP_003462441.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Dehalococcoides sp. GT] gi|146270250|gb|ABQ17242.1| pyruvate ferredoxin oxidoreductase, delta subunit [Dehalococcoides sp. BAV1] gi|270153936|gb|ACZ61774.1| 2-oxoacid:ferredoxin oxidoreductase, delta subunit [Dehalococcoides sp. VS] gi|288946288|gb|ADC73985.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Dehalococcoides sp. GT] Length = 98 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 10/87 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E G+ S G+ + + ++CI C +C CP I ++ Sbjct: 21 EPGNASQYKTGDWRSQLPIHNFKKCIKCGVCYIFCPEGCINETKEG----------FFEA 70 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFE 125 D+ C CG+C CP AIV E Sbjct: 71 DLFYCKGCGICAHECPTGAIVMKDEEE 97 >gi|187733441|ref|YP_001879524.1| dihydropyrimidine dehydrogenase [Shigella boydii CDC 3083-94] gi|187430433|gb|ACD09707.1| dihydroorotate dehydrogenase family protein [Shigella boydii CDC 3083-94] Length = 411 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + ++C+ C C C G + + + +T + K Sbjct: 324 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 378 CVGCLLCGHVCPVGCIDLG 396 >gi|332755186|gb|EGJ85550.1| hypothetical protein SFK671_2726 [Shigella flexneri K-671] Length = 289 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + ++C+ C C C G + + + +T + K Sbjct: 202 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 255 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 256 CVGCLLCGHVCPVGCIELG 274 >gi|312878994|ref|ZP_07738794.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Aminomonas paucivorans DSM 12260] gi|310782285|gb|EFQ22683.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Aminomonas paucivorans DSM 12260] Length = 597 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 10/66 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L +Y E+C C LC +CPA A+T + + ID KC+ CG C A Sbjct: 539 LVQYVIDPEKCKGCTLCAKVCPAGAVTGKLKEA----------HVIDQEKCVKCGACFSA 588 Query: 113 CPVDAI 118 C AI Sbjct: 589 CKFGAI 594 Score = 37.4 bits (85), Expect = 0.62, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 17/40 (42%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + + V+Y ID KC C LC + CP A+ Sbjct: 525 HVRDHRCPAGKCKDLVQYVIDPEKCKGCTLCAKVCPAGAV 564 >gi|309781131|ref|ZP_07675869.1| electron transport complex, RnfABCDGE type, B subunit [Ralstonia sp. 5_7_47FAA] gi|308920197|gb|EFP65856.1| electron transport complex, RnfABCDGE type, B subunit [Ralstonia sp. 5_7_47FAA] Length = 276 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 23/64 (35%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ERCI C LC CP AI + + C C LC CPVD I Sbjct: 90 DPERCIGCTLCIQACPVDAIVGAPK----------AMHTVLEDWCTGCDLCVPPCPVDCI 139 Query: 119 VEGP 122 P Sbjct: 140 DMIP 143 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 14/21 (66%), Positives = 16/21 (76%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID +CI C LC +ACPVDAI Sbjct: 89 IDPERCIGCTLCIQACPVDAI 109 >gi|310658331|ref|YP_003936052.1| iron-sulfur-binding protein [Clostridium sticklandii DSM 519] gi|308825109|emb|CBH21147.1| putative iron-sulfur-binding protein [Clostridium sticklandii] Length = 340 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 22/86 (25%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++CI+C LC C +AI ++ I KC+ C C CPV AIV Sbjct: 188 KKCISCGLCVKKCDVEAIEMKEKA------------FIHSEKCVGCAGCIAVCPVGAIVN 235 Query: 121 GP----------NFEFATETRQELYY 136 + +A + ++ Y Sbjct: 236 DWSEVNFKEKLAEYAYAAQKDKDNVY 261 >gi|302336797|ref|YP_003802003.1| cobyrinic acid ac-diamide synthase [Spirochaeta smaragdinae DSM 11293] gi|301633982|gb|ADK79409.1| Cobyrinic acid ac-diamide synthase [Spirochaeta smaragdinae DSM 11293] Length = 308 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 13/70 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C C + C AI +E+ +D + C CG+C CP A Sbjct: 74 DAGLCTGCGKCISFCRFDAIHMEN-----------SVAQVDPVGCEGCGVCTLVCPSSAF 122 Query: 119 VEGPNFEFAT 128 E A Sbjct: 123 TL--EEEMAG 130 >gi|294102538|ref|YP_003554396.1| NADH:ubiquinone oxidoreductase, subunit G, iron- sulfur binding protein [Aminobacterium colombiense DSM 12261] gi|293617518|gb|ADE57672.1| NADH:ubiquinone oxidoreductase, subunit G, iron- sulfur binding protein [Aminobacterium colombiense DSM 12261] Length = 674 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 4/86 (4%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAIC--PAQAITIESGPRCHDGTRRTVRYDI 98 F + + RCI C C +C A T++ R + + + + Sbjct: 126 PYLYSDFHNDASDEDLQVDHNRCILCLRCIRVCGEKVGAHTLDLEKRGWNASVVSDLGKV 185 Query: 99 --DMIKCIYCGLCQEACPVDAIVEGP 122 + C+ CG C + CP I Sbjct: 186 LGESDTCVSCGACAQVCPTGTITIRD 211 >gi|282165282|ref|YP_003357667.1| pyruvate synthase delta chain [Methanocella paludicola SANAE] gi|282157596|dbj|BAI62684.1| pyruvate synthase delta chain [Methanocella paludicola SANAE] Length = 94 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 6/64 (9%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 E+CI CK C CP A + + ++ ID C CG+C CPVDAI Sbjct: 35 HEKCIGCKRCADSCPDGAPYECA------HDGKKKKFCIDYDYCKGCGICAYECPVDAIN 88 Query: 120 EGPN 123 Sbjct: 89 MEKE 92 >gi|291614849|ref|YP_003525006.1| electron transport complex, RnfABCDGE type, C subunit [Sideroxydans lithotrophicus ES-1] gi|291584961|gb|ADE12619.1| electron transport complex, RnfABCDGE type, C subunit [Sideroxydans lithotrophicus ES-1] Length = 567 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 28/81 (34%), Gaps = 10/81 (12%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY----DIDMIKCIYCG 107 L P CI C C +CPA E P+ + + + + CI CG Sbjct: 357 RLFPPPPPALPCIRCTRCADVCPA-----ELQPQDLYWFAKAKDFGKAQEYHLFDCIECG 411 Query: 108 LCQEACPVDAIVEGPNFEFAT 128 C CP I + FA Sbjct: 412 ACAYVCPSQ-IPLVQYYRFAK 431 >gi|225175870|ref|ZP_03729863.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dethiobacter alkaliphilus AHT 1] gi|225168794|gb|EEG77595.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dethiobacter alkaliphilus AHT 1] Length = 57 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 27/66 (40%), Positives = 28/66 (42%), Gaps = 11/66 (16%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 E CI+C CE CP AIT Y ID CI CG C E CP Sbjct: 1 MTHVINEECISCGSCEPECPVDAITEGDDK-----------YVIDPETCIDCGACAEVCP 49 Query: 115 VDAIVE 120 VDAI E Sbjct: 50 VDAIHE 55 >gi|163931196|pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 34/93 (36%), Gaps = 5/93 (5%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 FEKG+ R + ++C LCE +CP + E+ + + Sbjct: 9 FEKGAHMVRKMRIAVIDYDKCNPDKCGHF-LCERVCPVNRMGGEAIIIDEENYKPI---- 63 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 I C CG+C CP +AI E E Sbjct: 64 IQEASCTGCGICVHKCPFNAISIVNLPEQLDED 96 >gi|157145890|ref|YP_001453209.1| electron transport complex protein RnfC [Citrobacter koseri ATCC BAA-895] gi|166225089|sp|A8AH10|RNFC_CITK8 RecName: Full=Electron transport complex protein rnfC gi|157083095|gb|ABV12773.1| hypothetical protein CKO_01641 [Citrobacter koseri ATCC BAA-895] Length = 705 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 35/108 (32%), Gaps = 11/108 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ CI C C CPA + + G + ++ CI CG C CP +I Sbjct: 373 EEQGCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHNIADCIECGACAWVCP-SSI 430 Query: 119 VEGP--------NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158 + A E ++ K R R E E + Sbjct: 431 PLVQYFRQEKAEIYAIAQEEKRAAEA-KARFEARQARLEREKAARLER 477 >gi|217974166|ref|YP_002358917.1| FAD linked oxidase domain-containing protein [Shewanella baltica OS223] gi|217499301|gb|ACK47494.1| FAD linked oxidase domain protein [Shewanella baltica OS223] Length = 934 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 6/78 (7%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 E + I + + D + KCI CG C++ CP A+ P AT Sbjct: 509 EGMLNPGVILNDDSTVHVKNIKPCPVVDDFVDKCIECGFCEKTCPTSALNFSPRQRIATL 568 Query: 130 TRQELYYDKERLLNNGDR 147 R+ ERL +GD+ Sbjct: 569 -RE-----IERLEQSGDK 580 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 26/75 (34%), Gaps = 16/75 (21%) Query: 57 PNGEERCIACKLCEAICPAQAITI----------------ESGPRCHDGTRRTVRYDIDM 100 + ++CI C CE CP A+ +SG + R + Sbjct: 536 DDFVDKCIECGFCEKTCPTSALNFSPRQRIATLREIERLEQSGDKAAAAEMRAAAKYDVV 595 Query: 101 IKCIYCGLCQEACPV 115 C C LC ACPV Sbjct: 596 DTCAACQLCTIACPV 610 >gi|160874494|ref|YP_001553810.1| FAD linked oxidase domain-containing protein [Shewanella baltica OS195] gi|160860016|gb|ABX48550.1| FAD linked oxidase domain protein [Shewanella baltica OS195] gi|315266733|gb|ADT93586.1| D-lactate dehydrogenase (cytochrome) [Shewanella baltica OS678] Length = 934 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 6/78 (7%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 E + I + + D + KCI CG C++ CP A+ P AT Sbjct: 509 EGMLNPGVILNDDSTVHVKNIKPCPVVDDFVDKCIECGFCEKTCPTSALNFSPRQRIATL 568 Query: 130 TRQELYYDKERLLNNGDR 147 R+ ERL +GD+ Sbjct: 569 -RE-----IERLEQSGDK 580 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 26/75 (34%), Gaps = 16/75 (21%) Query: 57 PNGEERCIACKLCEAICPAQAITI----------------ESGPRCHDGTRRTVRYDIDM 100 + ++CI C CE CP A+ +SG + R + Sbjct: 536 DDFVDKCIECGFCEKTCPTSALNFSPRQRIATLREIERLEQSGDKAAAAEMRAAAKYDVV 595 Query: 101 IKCIYCGLCQEACPV 115 C C LC ACPV Sbjct: 596 DTCAACQLCTIACPV 610 >gi|16765517|ref|NP_461132.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62180774|ref|YP_217191.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161613121|ref|YP_001587086.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167991114|ref|ZP_02572213.1| dihydroorotate dehydrogenase family protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168229542|ref|ZP_02654600.1| dihydroorotate dehydrogenase family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168259472|ref|ZP_02681445.1| dihydroorotate dehydrogenase family protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168466133|ref|ZP_02700003.1| dihydroorotate dehydrogenase family protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168818103|ref|ZP_02830103.1| dihydroorotate dehydrogenase family protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194470352|ref|ZP_03076336.1| dihydroorotate dehydrogenase family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197248087|ref|YP_002147158.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|198241985|ref|YP_002216271.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205353322|ref|YP_002227123.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857621|ref|YP_002244272.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|238912629|ref|ZP_04656466.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|16420724|gb|AAL21091.1| putative dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|62128407|gb|AAX66110.1| putative dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161362485|gb|ABX66253.1| hypothetical protein SPAB_00829 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194456716|gb|EDX45555.1| dihydroorotate dehydrogenase family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|195631189|gb|EDX49749.1| dihydroorotate dehydrogenase family protein [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197211790|gb|ACH49187.1| dihydroorotate dehydrogenase family protein [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197936501|gb|ACH73834.1| dihydroorotate dehydrogenase family protein [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205273103|emb|CAR38058.1| putative oxidoreductase [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205330434|gb|EDZ17198.1| dihydroorotate dehydrogenase family protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205335946|gb|EDZ22710.1| dihydroorotate dehydrogenase family protein [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205345012|gb|EDZ31776.1| dihydroorotate dehydrogenase family protein [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205351177|gb|EDZ37808.1| dihydroorotate dehydrogenase family protein [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206709424|emb|CAR33765.1| putative oxidoreductase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|261247401|emb|CBG25226.1| putative oxidoreductase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994252|gb|ACY89137.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158748|emb|CBW18260.1| putative oxidoreductase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913177|dbj|BAJ37151.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|320086627|emb|CBY96398.1| Dihydropyrimidine dehydrogenase [NADP+] DHPDHase; DPD; Dihydrouracil dehydrogenase; Dihydrothymine dehydrogenase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|321224841|gb|EFX49904.1| Dihydropyrimidine [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|322715249|gb|EFZ06820.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323130514|gb|ADX17944.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|326624022|gb|EGE30367.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628411|gb|EGE34754.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] gi|332989121|gb|AEF08104.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 411 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + +E+C+ C C C G + + + + K Sbjct: 324 IPAEDLDRSYIVYPRINQEKCVGCGRCYISCYDG------GHQAMEWDEHSRTPHCNTEK 377 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 378 CVGCLLCGHVCPVACIDLG 396 >gi|332561493|ref|ZP_08415806.1| pyruvate formate lyase activating enzyme [Rhodobacter sphaeroides WS8N] gi|332273995|gb|EGJ19313.1| pyruvate formate lyase activating enzyme [Rhodobacter sphaeroides WS8N] Length = 305 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 16/78 (20%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C C +C QA++ ++ KCI CG C + CP +A+ Sbjct: 61 CIGCGRCIPVCSVQALSGDNPGFVDR------------SKCIRCGECTKVCPTEALKRTG 108 Query: 123 N----FEFATETRQELYY 136 E E R++ + Sbjct: 109 RRMTLAEVMQELRKDAIH 126 >gi|323184230|gb|EFZ69607.1| hypothetical protein ECOK1357_2501 [Escherichia coli 1357] Length = 411 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + ++C+ C C C G + + + +T + K Sbjct: 324 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 378 CVGCLLCGHVCPVGCIELG 396 >gi|312135943|ref|YP_004003281.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta domain-containing protein [Caldicellulosiruptor owensensis OL] gi|311775994|gb|ADQ05481.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein [Caldicellulosiruptor owensensis OL] Length = 384 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 23/80 (28%), Gaps = 6/80 (7%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 G C C C IC +AI I + I +CI CG C Sbjct: 1 MLEKILDLIGNSNCTGCYACYNICEMKAIEIRKTEDGFY------KPVIKKERCIGCGFC 54 Query: 110 QEACPVDAIVEGPNFEFATE 129 CPV N E Sbjct: 55 ITNCPVLNPEYSNNPEPKFY 74 >gi|255264139|ref|ZP_05343481.1| formate dehydrogenase, alpha subunit [Thalassiobium sp. R2A62] gi|255106474|gb|EET49148.1| formate dehydrogenase, alpha subunit [Thalassiobium sp. R2A62] Length = 930 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 5/65 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID----MIKCIYCGLCQEACP 114 + CI C LC C + + G +D+ C+ CG C +ACP Sbjct: 147 NLDACIQCGLCVRACR-EVQVNDVIGMAGRGHDVYPTFDMADPMGASSCVACGECVQACP 205 Query: 115 VDAIV 119 A++ Sbjct: 206 TGALM 210 >gi|215484255|ref|YP_002326482.1| electron transport complex, RnfABCDGE type, B subunit [Acinetobacter baumannii AB307-0294] gi|260555960|ref|ZP_05828180.1| electron transport complex [Acinetobacter baumannii ATCC 19606] gi|332853651|ref|ZP_08434881.1| electron transport complex, RnfABCDGE type, B subunit [Acinetobacter baumannii 6013150] gi|332870830|ref|ZP_08439475.1| electron transport complex, RnfABCDGE type, B subunit [Acinetobacter baumannii 6013113] gi|193076747|gb|ABO11457.2| putative iron-sulfur protein [Acinetobacter baumannii ATCC 17978] gi|213987984|gb|ACJ58283.1| electron transport complex, RnfABCDGE type, B subunit [Acinetobacter baumannii AB307-0294] gi|260410871|gb|EEX04169.1| electron transport complex [Acinetobacter baumannii ATCC 19606] gi|332728475|gb|EGJ59849.1| electron transport complex, RnfABCDGE type, B subunit [Acinetobacter baumannii 6013150] gi|332731931|gb|EGJ63209.1| electron transport complex, RnfABCDGE type, B subunit [Acinetobacter baumannii 6013113] Length = 263 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 28/87 (32%), Gaps = 10/87 (11%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P E + G + E+ CI C C CP AI + + Sbjct: 66 PAETSVWPVQADGRPQRMKAIIREDECIGCTKCINACPVDAIIGSGK----------LMH 115 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPN 123 I C C LC CPVD I + Sbjct: 116 TILTDLCTGCELCIPPCPVDCIDLVED 142 >gi|167910108|ref|ZP_02497199.1| ferredoxin [Burkholderia pseudomallei 112] Length = 170 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 26/81 (32%), Gaps = 10/81 (12%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 + E A E+ CI C LC CP AI + I Sbjct: 66 PLNQAHGVERARPVAFIDEQLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVAE 115 Query: 102 KCIYCGLCQEACPVDAIVEGP 122 C C LC CPVD I P Sbjct: 116 LCTGCDLCVPPCPVDCIAMIP 136 >gi|218961952|ref|YP_001741727.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional hydrogenase), subunit beta (hymB-like); putative signal peptide [Candidatus Cloacamonas acidaminovorans] gi|167730609|emb|CAO81521.1| [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional hydrogenase), subunit beta (hymB-like); putative signal peptide [Candidatus Cloacamonas acidaminovorans] Length = 589 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 10/66 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L +Y E+C+ C LC CP I+ R + ID KCI CG CQ Sbjct: 531 LIQYKINPEKCVGCTLCARKCPVSCISG----------RTKQVHKIDQSKCIKCGACQNV 580 Query: 113 CPVDAI 118 C +A+ Sbjct: 581 CKFNAV 586 >gi|167551143|ref|ZP_02344898.1| dihydroorotate dehydrogenase family protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205324061|gb|EDZ11900.1| dihydroorotate dehydrogenase family protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 411 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + +E+C+ C C C G + + + + K Sbjct: 324 IPAEDLDRSYIVYPRINQEKCVGCGRCYISCYDG------GHQAMEWDEHSRTPHCNTEK 377 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 378 CVGCLLCGHVCPVACIDLG 396 >gi|88603354|ref|YP_503532.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methanospirillum hungatei JF-1] gi|88188816|gb|ABD41813.1| formylmethanofuran dehydrogenase, subunit G [Methanospirillum hungatei JF-1] Length = 203 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 33/125 (26%), Positives = 43/125 (34%), Gaps = 24/125 (19%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 MR + + E+V FFL ST P FR L Sbjct: 1 MRSILSYIRHMARPEWVKTFFLA-------------KTAPLSTPPHFREFPHLT-----G 42 Query: 61 ERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C C C ICPA AI + + + + I + CI CGLC E CP + Sbjct: 43 KECTHCFQCMMICPAPGAIEVIRTDKPGEW-----KPVIHLGHCIRCGLCVEICPELVLD 97 Query: 120 EGPNF 124 G Sbjct: 98 AGRVH 102 Score = 37.0 bits (84), Expect = 0.94, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 20/72 (27%), Gaps = 8/72 (11%) Query: 55 RYPNGEERCIACKLCEAICPAQ--------AITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 C+ C C CP A + + + KC C Sbjct: 117 HITINPVTCMGCGSCTVACPVNKEIDPQLAAKGTSTSDEVIMRVYKGINTVFHEDKCTGC 176 Query: 107 GLCQEACPVDAI 118 C+E CP +I Sbjct: 177 KTCEEQCPTRSI 188 >gi|5911349|gb|AAD55754.1|AF132546_1 pyruvate:ferredoxin oxidoreductase [Spironucleus barkhanus] Length = 1182 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 28/94 (29%), Gaps = 19/94 (20%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ------AITIESGPRCHDGTRRTVRY 96 T+ F+ A++ CI C LC CP A E+ + Sbjct: 679 TTKYFKRSIAVQVPVWESATCIQCNLCVVACPHAVIRPYLATDEEAAKAPESVKMLVSKN 738 Query: 97 DID-------------MIKCIYCGLCQEACPVDA 117 I + C CG+C CP A Sbjct: 739 KIVEKYGQFKFAIQASPLDCTGCGVCVNVCPTAA 772 >gi|71279765|ref|YP_268923.1| electron transport complex protein RnfB [Colwellia psychrerythraea 34H] gi|71145505|gb|AAZ25978.1| electron transport complex, RnfABCDGE type, B subunit [Colwellia psychrerythraea 34H] Length = 189 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 29/85 (34%), Gaps = 10/85 (11%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + S + + EE CI C C CP AI + Sbjct: 92 QPIDDSHVSGDAPKSNRPKVAFVIEEDCIGCTKCIQACPVDAIIGAAKQ----------M 141 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVE 120 + I + +C C LC CPVD I Sbjct: 142 HTIIIDECTGCDLCVAPCPVDCIEM 166 >gi|73669074|ref|YP_305089.1| formate dehydrogenase subunit beta (F420) [Methanosarcina barkeri str. Fusaro] gi|72396236|gb|AAZ70509.1| formate dehydrogenase, beta subunit (F420) [Methanosarcina barkeri str. Fusaro] Length = 401 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 6/72 (8%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPA------QAITIESGPRCHDGTRRTVRYDIDMIK 102 G+ L++ + RCI C C +CPA TI G +RY + Sbjct: 277 GKTRLKQLVDETSRCIKCYTCIEVCPALSGTKVSDFTITPGKVPPSFAFHALRYSLVADS 336 Query: 103 CIYCGLCQEACP 114 CI CG C+E CP Sbjct: 337 CINCGQCEELCP 348 >gi|121996875|ref|YP_001001662.1| RnfABCDGE type electron transport complex subunit C [Halorhodospira halophila SL1] gi|121588280|gb|ABM60860.1| electron transport complex, RnfABCDGE type, C subunit [Halorhodospira halophila SL1] Length = 448 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 21/68 (30%), Gaps = 1/68 (1%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C +CP E G + + C CG C CP I Sbjct: 374 QPCIRCGRCVEVCPVGLNPAELGRLAAKRQYAVMEERFHLNDCFECGCCSYVCP-SNIPL 432 Query: 121 GPNFEFAT 128 F A Sbjct: 433 VQYFRIAK 440 >gi|115360706|ref|YP_777843.1| dihydropyrimidine dehydrogenase [Burkholderia ambifaria AMMD] gi|115286034|gb|ABI91509.1| dihydroorotate oxidase B, catalytic subunit / dihydrouracil dehydrogenase (NAD+) / dihydropyrimidine dehydrogenase (NADP+) [Burkholderia ambifaria AMMD] Length = 435 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 6/63 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117 ++RCI C LC C + + + +++ +C+ C LC CPV Sbjct: 341 DQDRCIQCGLCHIACEDTSHQAITAEKDGV-----RHFEVVDAECVGCNLCMHVCPVEQC 395 Query: 118 IVE 120 I Sbjct: 396 ITM 398 >gi|325845523|ref|ZP_08168812.1| sulfite reductase, subunit C [Turicibacter sp. HGF1] gi|325488427|gb|EGC90847.1| sulfite reductase, subunit C [Turicibacter sp. HGF1] Length = 321 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 27/83 (32%), Gaps = 8/83 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + + G + ++RCI+C C C +A S Sbjct: 145 CPNDCIKARMQDFGIIGMTMPQYDKDRCISCGACVRACKKKATGALSAENFKVLR----- 199 Query: 96 YDIDMIKCIYCGLCQEACPVDAI 118 D KCI CG C CP A Sbjct: 200 ---DGSKCIGCGECVIQCPTAAW 219 >gi|308126604|ref|ZP_05911330.2| putative formate dehydrogenase, alpha subunit [Vibrio parahaemolyticus AQ4037] gi|308107825|gb|EFO45365.1| putative formate dehydrogenase, alpha subunit [Vibrio parahaemolyticus AQ4037] Length = 1422 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 29/84 (34%), Gaps = 19/84 (22%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM------------------ 100 RCI+C C C QA+ R +R D Sbjct: 636 DANRCISCGQCIQACREQAVHGVLSFVSDKNGRPALRPDDRPRFRSDEKGASCSGLTLMG 695 Query: 101 -IKCIYCGLCQEACPVDAIVEGPN 123 KC+ CG C +ACP A+V+ + Sbjct: 696 DSKCVQCGACVQACPTGAMVDSRD 719 >gi|303247133|ref|ZP_07333408.1| response regulator receiver protein [Desulfovibrio fructosovorans JJ] gi|302491559|gb|EFL51444.1| response regulator receiver protein [Desulfovibrio fructosovorans JJ] Length = 1162 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 24/74 (32%), Gaps = 7/74 (9%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR-------TVRYDIDMIKCIYC 106 R +C+ C C +CP + G Y +D+ C C Sbjct: 108 RSPFVDATKCVGCGACAKVCPVSVPNEFNAGLTSRGAVYLPVPHAIPNHYVVDLDACQRC 167 Query: 107 GLCQEACPVDAIVE 120 C EACP AI Sbjct: 168 WQCYEACPTGAIDF 181 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 9/58 (15%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 C C C +CP A T+++ R V DI C CG C ACP A Sbjct: 1077 HSLCTRCGKCLDVCPYGARTLDTE------HDRIVVDDI---LCQGCGSCASACPNSA 1125 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 7/28 (25%), Positives = 10/28 (35%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFE 125 + C CG C + CP A + Sbjct: 1075 VRHSLCTRCGKCLDVCPYGARTLDTEHD 1102 >gi|303244683|ref|ZP_07331015.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanothermococcus okinawensis IH1] gi|302484991|gb|EFL47923.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanothermococcus okinawensis IH1] Length = 180 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 2/59 (3%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPVDAIV 119 CI C C CP I + T Y I+ KC+YC C + CPV +I Sbjct: 65 CIGCGGCANACPTGCIEMVKIEPVKITENYTKEYIPVINSEKCVYCLYCHDFCPVFSIF 123 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 9/26 (34%), Positives = 10/26 (38%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPN 123 + CI CG C ACP I Sbjct: 60 VFNELCIGCGGCANACPTGCIEMVKI 85 >gi|291549259|emb|CBL25521.1| Coenzyme F420-reducing hydrogenase, beta subunit [Ruminococcus torques L2-14] Length = 403 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 6/67 (8%) Query: 47 FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 +G + + N + C C +CE +C AI ++ + I+ KCI C Sbjct: 1 MKGHFNMIQVYNNKSECCGCGICETVCTQNAIEMKMDEIGVIYPK------INQEKCIDC 54 Query: 107 GLCQEAC 113 G C++ C Sbjct: 55 GACKKIC 61 >gi|261364486|ref|ZP_05977369.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria mucosa ATCC 25996] gi|288567418|gb|EFC88978.1| electron transport complex, RnfABCDGE type, B subunit [Neisseria mucosa ATCC 25996] Length = 282 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 24/64 (37%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI S + + +C CGLC CPVD I Sbjct: 76 DEAACIGCTACIRACPVDAIMGASK----------FMHTVISDECTGCGLCLPPCPVDCI 125 Query: 119 VEGP 122 P Sbjct: 126 DMIP 129 Score = 36.2 bits (82), Expect = 1.3, Method: Composition-based stats. Identities = 13/22 (59%), Positives = 14/22 (63%) Query: 98 IDMIKCIYCGLCQEACPVDAIV 119 ID CI C C ACPVDAI+ Sbjct: 75 IDEAACIGCTACIRACPVDAIM 96 >gi|224540580|ref|ZP_03681119.1| hypothetical protein BACCELL_05494 [Bacteroides cellulosilyticus DSM 14838] gi|224517830|gb|EEF86935.1| hypothetical protein BACCELL_05494 [Bacteroides cellulosilyticus DSM 14838] Length = 1185 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 27/81 (33%), Gaps = 15/81 (18%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG A N E CI C C +CP A T Sbjct: 676 RGVAAFVPEWN-AENCIQCNKCAYVCPHASIRPFVLDAEEQKGANFEMLKAVGKVFDGMT 734 Query: 94 VRYDIDMIKCIYCGLCQEACP 114 R +D++ C+ CG C + CP Sbjct: 735 FRIQVDVLDCLGCGNCADICP 755 >gi|94271581|ref|ZP_01291978.1| Pyruvate:ferredoxin (flavodoxin) oxidoreductase [delta proteobacterium MLMS-1] gi|93450408|gb|EAT01608.1| Pyruvate:ferredoxin (flavodoxin) oxidoreductase [delta proteobacterium MLMS-1] Length = 980 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 29/109 (26%), Gaps = 26/109 (23%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR- 91 T +EK + + CI C C CP AI ++ + Sbjct: 471 TGTTQYEKRNIAVHVPEWL--------PTNCIQCGRCSLACPHAAIRMKMVKSADLKGKS 522 Query: 92 ---------------RTVRYDIDMIKCIYCGLCQEACP--VDAIVEGPN 123 R + C C LC E CP A+ N Sbjct: 523 KSFKSVKGVGKQFSGREACLQVFTEDCCGCTLCVEVCPAKTKALKMIDN 571 >gi|55378119|ref|YP_135969.1| ferridoxin protein [Haloarcula marismortui ATCC 43049] gi|55230844|gb|AAV46263.1| putative ferridoxin protein [Haloarcula marismortui ATCC 43049] Length = 711 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 25/77 (32%), Gaps = 12/77 (15%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + + C C +CP AI C+ CGLC+E CP A Sbjct: 576 DVNDACTLTPTCTNLCPTDAIQRTGEGELAFNH----------ADCVNCGLCEEGCPETA 625 Query: 118 IVEGPNFEFA--TETRQ 132 I + + E R Sbjct: 626 ITMHDGLDLSLLPENRG 642 >gi|332098402|gb|EGJ03375.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Shigella dysenteriae 155-74] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|332095091|gb|EGJ00124.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Shigella boydii 3594-74] Length = 768 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 240 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 293 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 294 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 353 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 354 RQNPEIKAINMMSRLEHVEEEK 375 >gi|332091187|gb|EGI96276.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Shigella boydii 5216-82] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|331667746|ref|ZP_08368610.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli TA271] gi|331065331|gb|EGI37226.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli TA271] Length = 1048 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 520 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 573 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 574 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 633 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 634 RQNPEIKAINMMSRLEHVEEEK 655 >gi|327254042|gb|EGE65671.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli STEC_7v] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQDPEIKAINMMSRLEHVEEEK 781 >gi|325497401|gb|EGC95260.1| putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved protein; 4Fe-4S cluster binding protein [Escherichia fergusonii ECD227] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQDPEIKAINMMSRLEHVEEEK 781 >gi|324113200|gb|EGC07175.1| ferredoxin oxidoreductase [Escherichia fergusonii B253] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|324006191|gb|EGB75410.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli MS 57-2] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|323976958|gb|EGB72045.1| ferredoxin oxidoreductase [Escherichia coli TW10509] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQDPEIKAINMMSRLEHVEEEK 781 >gi|323963945|gb|EGB59437.1| ferredoxin oxidoreductase [Escherichia coli M863] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQDPEIKAINMMSRLEHVEEEK 781 >gi|323187582|gb|EFZ72891.1| pyruvate:ferredoxin oxidoreductase [Escherichia coli RN587/1] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|323185485|gb|EFZ70846.1| pyruvate:ferredoxin oxidoreductase [Escherichia coli 1357] gi|323947683|gb|EGB43686.1| ferredoxin oxidoreductase [Escherichia coli H120] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|320636993|gb|EFX06854.1| Pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str. G5101] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|320195638|gb|EFW70263.1| Pyruvate-flavodoxin oxidoreductase [Escherichia coli WV_060327] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|320190150|gb|EFW64801.1| Pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str. EC1212] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|317470545|ref|ZP_07929933.1| iron only hydrogenase large subunit domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316902060|gb|EFV23986.1| iron only hydrogenase large subunit domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 650 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 13/86 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 EE+CI C C+ IC + + R CI CG C CPV++I Sbjct: 23 HEEKCIKCGQCKNICKDYISVLGTYSLAETKDR---------AVCINCGQCANVCPVESI 73 Query: 119 VEGPNFEFATETRQELYYDKERLLNN 144 E + + +E D E+++ Sbjct: 74 TETYEY----QQVREAVKDPEKIVIV 95 >gi|312969296|ref|ZP_07783500.1| pyruvate:ferredoxin oxidoreductase [Escherichia coli 2362-75] gi|312286080|gb|EFR13996.1| pyruvate:ferredoxin oxidoreductase [Escherichia coli 2362-75] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|312880860|ref|ZP_07740660.1| Cobyrinic acid ac-diamide synthase [Aminomonas paucivorans DSM 12260] gi|310784151|gb|EFQ24549.1| Cobyrinic acid ac-diamide synthase [Aminomonas paucivorans DSM 12260] Length = 292 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 20/64 (31%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +RC C C C A+ + C CGLC CP AI Sbjct: 74 DPDRCDRCGRCAQACRFGALLCLGAGPV----------RVLEDLCHGCGLCARVCPRGAI 123 Query: 119 VEGP 122 E P Sbjct: 124 REEP 127 >gi|311279740|ref|YP_003941971.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Enterobacter cloacae SCF1] gi|308748935|gb|ADO48687.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Enterobacter cloacae SCF1] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPDIKAINMMSRLEHVEEEK 781 >gi|331682842|ref|ZP_08383461.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli H299] gi|331080473|gb|EGI51652.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli H299] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|331672943|ref|ZP_08373721.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli TA280] gi|331069851|gb|EGI41228.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli TA280] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|331657402|ref|ZP_08358364.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli TA206] gi|315297180|gb|EFU56460.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli MS 16-3] gi|331055650|gb|EGI27659.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli TA206] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|331652655|ref|ZP_08353666.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli M718] gi|331049761|gb|EGI21827.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli M718] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|331646680|ref|ZP_08347783.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli M605] gi|330911212|gb|EGH39722.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli AA86] gi|331045432|gb|EGI17559.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli M605] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|307309833|ref|ZP_07589483.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Escherichia coli W] gi|306909551|gb|EFN40045.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Escherichia coli W] gi|315060662|gb|ADT74989.1| fused predicted pyruvate-flavodoxin oxidoreductase: conserved protein/conserved protein/FeS binding protein [Escherichia coli W] gi|323378772|gb|ADX51040.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Escherichia coli KO11] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|300937573|ref|ZP_07152388.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli MS 21-1] gi|300457400|gb|EFK20893.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli MS 21-1] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQDPEIKAINMMSRLEHVEEEK 781 >gi|300922988|ref|ZP_07139059.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli MS 182-1] gi|301326913|ref|ZP_07220207.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli MS 78-1] gi|300420717|gb|EFK04028.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli MS 182-1] gi|300846465|gb|EFK74225.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli MS 78-1] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|300916621|ref|ZP_07133341.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli MS 115-1] gi|300416066|gb|EFJ99376.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli MS 115-1] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|301017799|ref|ZP_07182449.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli MS 69-1] gi|300400010|gb|EFJ83548.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli MS 69-1] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|300948435|ref|ZP_07162536.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli MS 116-1] gi|300954601|ref|ZP_07167046.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli MS 175-1] gi|300318435|gb|EFJ68219.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli MS 175-1] gi|300452049|gb|EFK15669.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli MS 116-1] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|300723256|ref|YP_003712556.1| putative 4Fe-4S ferredoxin-type protein [Xenorhabdus nematophila ATCC 19061] gi|297629773|emb|CBJ90381.1| putative 4Fe-4S ferredoxin-type protein [Xenorhabdus nematophila ATCC 19061] Length = 207 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 24/73 (32%), Gaps = 10/73 (13%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 A + EE CI C C CP AI + + + C C LC Sbjct: 104 NPARKVAFIDEENCIGCTKCIQACPVDAIIGAN----------RAMHTVVEDLCTGCDLC 153 Query: 110 QEACPVDAIVEGP 122 CP D I P Sbjct: 154 VAPCPTDCITMIP 166 >gi|294777307|ref|ZP_06742760.1| 4Fe-4S binding domain protein [Bacteroides vulgatus PC510] gi|294448836|gb|EFG17383.1| 4Fe-4S binding domain protein [Bacteroides vulgatus PC510] Length = 364 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 28/77 (36%), Gaps = 8/77 (10%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP--VDAIVEG 121 + C C IC AI++ + I+ CI CG C+ CP I Sbjct: 1 MGCWACCNICSKNAISMIEDK------FGFLHPQINHNLCIDCGACRTVCPNNTLPIFHI 54 Query: 122 PNFEFATETRQELYYDK 138 +A ++ + Y K Sbjct: 55 EMSTYAAVSKNDDIYKK 71 >gi|293409742|ref|ZP_06653318.1| pyruvate:ferredoxin oxidoreductase [Escherichia coli B354] gi|291470210|gb|EFF12694.1| pyruvate:ferredoxin oxidoreductase [Escherichia coli B354] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|293414733|ref|ZP_06657382.1| pyruvate:ferredoxin oxidoreductase [Escherichia coli B185] gi|291434791|gb|EFF07764.1| pyruvate:ferredoxin oxidoreductase [Escherichia coli B185] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|290509259|ref|ZP_06548630.1| electron transport complex protein RnfC [Klebsiella sp. 1_1_55] gi|289778653|gb|EFD86650.1| electron transport complex protein RnfC [Klebsiella sp. 1_1_55] Length = 551 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 40/112 (35%), Gaps = 13/112 (11%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 371 PQEEKGCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHNLADCIECGACAWVCP-S 428 Query: 117 AIVEGPNF-----EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 I F E + ++E +R R+E+ R + + R Sbjct: 429 NIPLVQYFRQEKAEISAIRQEE-----QRAAEAKARFEARQAR-LEREKAAR 474 >gi|290508684|ref|ZP_06548055.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Klebsiella sp. 1_1_55] gi|289778078|gb|EFD86075.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Klebsiella sp. 1_1_55] Length = 1171 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 24/83 (28%), Gaps = 14/83 (16%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDG---------TR 91 + AL + C C C +CP AI E G Sbjct: 674 WEKRGIALEVPVWQPDGCTQCNQCAFVCPHAAIRPALLSAEEQDTAPAGLLSKPAQGAKD 733 Query: 92 RTVRYDIDMIKCIYCGLCQEACP 114 I + C CG C E+CP Sbjct: 734 YHYHLAISPLDCSGCGNCVESCP 756 >gi|284921282|emb|CBG34348.1| probable pyruvate-flavodoxin oxidoreductase [Escherichia coli 042] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|281178540|dbj|BAI54870.1| putative oxidoreductase Fe-S subunit [Escherichia coli SE15] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|288934482|ref|YP_003438541.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Klebsiella variicola At-22] gi|255761135|gb|ACU32735.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Klebsiella variicola At-22] Length = 1171 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 24/83 (28%), Gaps = 14/83 (16%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDG---------TR 91 + AL + C C C +CP AI E G Sbjct: 674 WEKRGIALEVPVWQPDGCTQCNQCAFVCPHAAIRPALLNAEEQDTAPAGLLSKPAQGAKD 733 Query: 92 RTVRYDIDMIKCIYCGLCQEACP 114 I + C CG C E+CP Sbjct: 734 YHYHLAISPLDCSGCGNCVESCP 756 >gi|256018399|ref|ZP_05432264.1| putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved protein; 4Fe-4S cluster binding protein [Shigella sp. D9] gi|332279453|ref|ZP_08391866.1| pyruvate-flavodoxin oxidoreductase [Shigella sp. D9] gi|332101805|gb|EGJ05151.1| pyruvate-flavodoxin oxidoreductase [Shigella sp. D9] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|261402830|ref|YP_003247054.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus vulcanius M7] gi|261369823|gb|ACX72572.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus vulcanius M7] Length = 654 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 31/88 (35%), Gaps = 7/88 (7%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAIT-------IESGPRCHDGTRRTVRYDI 98 F+ + + E +C C C +CP + + +Y I Sbjct: 229 NFKVKIMKKPRYIDETKCTGCGQCAEVCPIEVPNEFDMGLGMRKAIYKPFPQAVPSKYTI 288 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEF 126 D CI CGLC + C +AI EF Sbjct: 289 DKEHCIDCGLCAKVCGPNAIDYDQKPEF 316 Score = 40.5 bits (93), Expect = 0.083, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 7/64 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E C C +C CP A + + D+ C CG C CP A+ Sbjct: 580 NKEICGGCGVCVKQCPYGAPRLIEED-------GKLVCDVIAALCKGCGTCVAGCPSGAL 632 Query: 119 VEGP 122 + Sbjct: 633 EQNH 636 >gi|253773629|ref|YP_003036460.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254161451|ref|YP_003044559.1| fused pyruvate-flavodoxin oxidoreductase/hypothetical protein [Escherichia coli B str. REL606] gi|300927862|ref|ZP_07143424.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli MS 187-1] gi|242377149|emb|CAQ31878.1| predicted pyruvate:flavodoxin oxidoreductase [Escherichia coli BL21(DE3)] gi|253324673|gb|ACT29275.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253973352|gb|ACT39023.1| fused predicted pyruvate-flavodoxin oxidoreductase: conserved hypothetical protein/conserved hypothetical protein/FeS binding protein [Escherichia coli B str. REL606] gi|253977563|gb|ACT43233.1| fused predicted pyruvate-flavodoxin oxidoreductase: conserved protein/conserved protein/FeS binding protein [Escherichia coli BL21(DE3)] gi|300464147|gb|EFK27640.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli MS 187-1] gi|323962440|gb|EGB58023.1| ferredoxin oxidoreductase [Escherichia coli H489] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|222033152|emb|CAP75892.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli LF82] gi|312945985|gb|ADR26812.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O83:H1 str. NRG 857C] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|225026580|ref|ZP_03715772.1| hypothetical protein EUBHAL_00830 [Eubacterium hallii DSM 3353] gi|224956072|gb|EEG37281.1| hypothetical protein EUBHAL_00830 [Eubacterium hallii DSM 3353] Length = 656 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 29/69 (42%), Gaps = 10/69 (14%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 ALRR+ ERC C C CP AI+ + Y ID CI CG C+ Sbjct: 596 ALRRFVISPERCKGCSKCARNCPVGAISGQIKKP----------YVIDDSICIKCGACES 645 Query: 112 ACPVDAIVE 120 AC AI Sbjct: 646 ACAFHAIHI 654 Score = 37.0 bits (84), Expect = 0.91, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 13/40 (32%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + R+ I +C C C CPV AI Sbjct: 583 HVVDKKCAAKNCTALRRFVISPERCKGCSKCARNCPVGAI 622 >gi|218704867|ref|YP_002412386.1| putative 2-oxoacid-flavodoxin [Escherichia coli UMN026] gi|293404876|ref|ZP_06648868.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli FVEC1412] gi|298380520|ref|ZP_06990119.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli FVEC1302] gi|300900106|ref|ZP_07118300.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli MS 198-1] gi|218431964|emb|CAR12849.1| putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved protein; 4Fe-4S cluster binding protein [Escherichia coli UMN026] gi|291427084|gb|EFF00111.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli FVEC1412] gi|298277962|gb|EFI19476.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli FVEC1302] gi|300356385|gb|EFJ72255.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli MS 198-1] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|218689337|ref|YP_002397549.1| putative 2-oxoacid-flavodoxin/oxidoreductase [Escherichia coli ED1a] gi|218426901|emb|CAR07759.2| putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved protein; 4Fe-4S cluster binding protein [Escherichia coli ED1a] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|218700067|ref|YP_002407696.1| putative 2-oxoacid-flavodoxin/oxidoreductase [Escherichia coli IAI39] gi|218370053|emb|CAR17829.1| putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved protein; 4Fe-4S cluster binding protein [Escherichia coli IAI39] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|218553907|ref|YP_002386820.1| putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved protein; 4Fe-4S cluster binding protein [Escherichia coli IAI1] gi|218360675|emb|CAQ98236.1| putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved protein; 4Fe-4S cluster binding protein [Escherichia coli IAI1] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|218548974|ref|YP_002382765.1| 2-oxoacid-flavodoxin [Escherichia fergusonii ATCC 35469] gi|218356515|emb|CAQ89138.1| putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved protein; 4Fe-4S cluster binding protein [Escherichia fergusonii ATCC 35469] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|218694923|ref|YP_002402590.1| putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved protein; 4Fe-4S cluster binding protein [Escherichia coli 55989] gi|301019431|ref|ZP_07183605.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli MS 196-1] gi|218351655|emb|CAU97370.1| putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved protein; 4Fe-4S cluster binding protein [Escherichia coli 55989] gi|299882221|gb|EFI90432.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli MS 196-1] gi|309701648|emb|CBJ00955.1| probable pyruvate-flavodoxin oxidoreductase [Escherichia coli ETEC H10407] gi|323937532|gb|EGB33801.1| ferredoxin oxidoreductase [Escherichia coli E1520] gi|323942228|gb|EGB38400.1| ferredoxin oxidoreductase [Escherichia coli E482] gi|332343046|gb|AEE56380.1| pyruvate:ferredoxin oxidoreductase NifJ [Escherichia coli UMNK88] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|215486641|ref|YP_002329072.1| fused predicted pyruvate-flavodoxin oxidoreductase: conserved protein/conserved protein/FeS binding protein [Escherichia coli O127:H6 str. E2348/69] gi|215264713|emb|CAS09087.1| fused predicted pyruvate-flavodoxin oxidoreductase: conserved protein/conserved protein/FeS binding protein [Escherichia coli O127:H6 str. E2348/69] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|209918652|ref|YP_002292736.1| putative oxidoreductase Fe-S subunit [Escherichia coli SE11] gi|300820091|ref|ZP_07100265.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli MS 107-1] gi|209911911|dbj|BAG76985.1| putative oxidoreductase Fe-S subunit [Escherichia coli SE11] gi|300527348|gb|EFK48410.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli MS 107-1] gi|324021229|gb|EGB90448.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli MS 117-3] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|254463956|ref|ZP_05077367.1| formate dehydrogenase, alpha subunit [Rhodobacterales bacterium Y4I] gi|206684864|gb|EDZ45346.1| formate dehydrogenase, alpha subunit [Rhodobacterales bacterium Y4I] Length = 924 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 5/65 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI----DMIKCIYCGLCQEACP 114 + CI+C LC C + + G +DI C+ CG C +ACP Sbjct: 147 NLDACISCGLCVRACR-EVQVNDVIGMAGRGHNAFPTFDIADPMGQSTCVACGECVQACP 205 Query: 115 VDAIV 119 A++ Sbjct: 206 TGALM 210 >gi|168749008|ref|ZP_02774030.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str. EC4113] gi|168756033|ref|ZP_02781040.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str. EC4401] gi|168769434|ref|ZP_02794441.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str. EC4486] gi|168775177|ref|ZP_02800184.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str. EC4196] gi|168782882|ref|ZP_02807889.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str. EC4076] gi|168788322|ref|ZP_02813329.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str. EC869] gi|168799662|ref|ZP_02824669.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str. EC508] gi|195938015|ref|ZP_03083397.1| putative oxidoreductase [Escherichia coli O157:H7 str. EC4024] gi|208811159|ref|ZP_03252992.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str. EC4206] gi|208816429|ref|ZP_03257608.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str. EC4045] gi|208819161|ref|ZP_03259481.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str. EC4042] gi|209400785|ref|YP_002270406.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str. EC4115] gi|254792941|ref|YP_003077778.1| fused putative pyruvate-flavodoxin oxidoreductase: conserved protein, conserved protein, FeS binding protein [Escherichia coli O157:H7 str. TW14359] gi|261224340|ref|ZP_05938621.1| fused predicted pyruvate-flavodoxin oxidoreductase: conserved protein, conserved protein, FeS binding protein [Escherichia coli O157:H7 str. FRIK2000] gi|261257406|ref|ZP_05949939.1| fused predicted pyruvate-flavodoxin oxidoreductase: conserved protein, conserved protein, FeS binding protein [Escherichia coli O157:H7 str. FRIK966] gi|291282497|ref|YP_003499315.1| Pyruvate-flavodoxin oxidoreductase [Escherichia coli O55:H7 str. CB9615] gi|187769350|gb|EDU33194.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str. EC4196] gi|188016608|gb|EDU54730.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str. EC4113] gi|188999722|gb|EDU68708.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str. EC4076] gi|189356860|gb|EDU75279.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str. EC4401] gi|189361511|gb|EDU79930.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str. EC4486] gi|189371814|gb|EDU90230.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str. EC869] gi|189377951|gb|EDU96367.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str. EC508] gi|208724665|gb|EDZ74373.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str. EC4206] gi|208733077|gb|EDZ81765.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str. EC4045] gi|208739284|gb|EDZ86966.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str. EC4042] gi|209162185|gb|ACI39618.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str. EC4115] gi|209771308|gb|ACI83966.1| putative oxidoreductase [Escherichia coli] gi|209771312|gb|ACI83968.1| putative oxidoreductase [Escherichia coli] gi|209771314|gb|ACI83969.1| putative oxidoreductase [Escherichia coli] gi|209771316|gb|ACI83970.1| putative oxidoreductase [Escherichia coli] gi|254592341|gb|ACT71702.1| fused predicted pyruvate-flavodoxin oxidoreductase: conserved protein, conserved protein, FeS binding protein [Escherichia coli O157:H7 str. TW14359] gi|290762370|gb|ADD56331.1| Pyruvate-flavodoxin oxidoreductase [Escherichia coli O55:H7 str. CB9615] gi|320642360|gb|EFX11646.1| Pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H- str. 493-89] gi|320647716|gb|EFX16461.1| Pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H- str. H 2687] gi|320653323|gb|EFX21460.1| Pyruvate-flavodoxin oxidoreductase [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320658992|gb|EFX26615.1| Pyruvate-flavodoxin oxidoreductase [Escherichia coli O55:H7 str. USDA 5905] gi|320663824|gb|EFX31052.1| Pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str. LSU-61] gi|326340985|gb|EGD64778.1| Pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str. 1125] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|170683269|ref|YP_001743829.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli SMS-3-5] gi|170520987|gb|ACB19165.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli SMS-3-5] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|218779005|ref|YP_002430323.1| hypothetical protein Dalk_1152 [Desulfatibacillum alkenivorans AK-01] gi|218760389|gb|ACL02855.1| protein of unknown function DUF362 [Desulfatibacillum alkenivorans AK-01] Length = 385 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 8/95 (8%) Query: 28 FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH 87 F Y + + + + E+C+ C C CPA+AI+ Sbjct: 289 FTPPKNTVYGGVVWPLTSKTVKNWLVEKPAPNPEKCVLCYQCMKTCPAEAIS------KP 342 Query: 88 DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 ++T +D KCI C C E CP AI Sbjct: 343 REGKKTPVFD--YRKCIRCFCCMEICPEAAIGLKK 375 >gi|91210642|ref|YP_540628.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli UTI89] gi|117623652|ref|YP_852565.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli APEC O1] gi|218558334|ref|YP_002391247.1| 2-oxoacid-flavodoxin fused oxidoreductase:conserved protein; 4Fe-4S cluster binding protein [Escherichia coli S88] gi|237705378|ref|ZP_04535859.1| pyruvate-flavodoxin oxidoreductase [Escherichia sp. 3_2_53FAA] gi|91072216|gb|ABE07097.1| probable pyruvate-flavodoxin oxidoreductase [Escherichia coli UTI89] gi|115512776|gb|ABJ00851.1| probable pyruvate-flavodoxin oxidoreductase [Escherichia coli APEC O1] gi|218365103|emb|CAR02812.1| putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved protein; 4Fe-4S cluster binding protein [Escherichia coli S88] gi|226900135|gb|EEH86394.1| pyruvate-flavodoxin oxidoreductase [Escherichia sp. 3_2_53FAA] gi|294490178|gb|ADE88934.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli IHE3034] gi|307627077|gb|ADN71381.1| putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved protein; 4Fe-4S cluster binding protein [Escherichia coli UM146] gi|315289083|gb|EFU48481.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli MS 110-3] gi|323949049|gb|EGB44941.1| ferredoxin oxidoreductase [Escherichia coli H252] gi|323956909|gb|EGB52641.1| ferredoxin oxidoreductase [Escherichia coli H263] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|82544174|ref|YP_408121.1| oxidoreductase, Fe-S subunit [Shigella boydii Sb227] gi|81245585|gb|ABB66293.1| putative oxidoreductase, Fe-S subunit [Shigella boydii Sb227] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|74312250|ref|YP_310669.1| putative oxidoreductase, Fe-S subunit [Shigella sonnei Ss046] gi|73855727|gb|AAZ88434.1| putative oxidoreductase, Fe-S subunit [Shigella sonnei Ss046] gi|323169667|gb|EFZ55334.1| pyruvate:ferredoxin oxidoreductase [Shigella sonnei 53G] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|15801750|ref|NP_287768.1| putative oxidoreductase, Fe-S subunit [Escherichia coli O157:H7 EDL933] gi|12515322|gb|AAG56382.1|AE005366_8 putative oxidoreductase, Fe-S subunit [Escherichia coli O157:H7 str. EDL933] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|16129339|ref|NP_415896.1| fused predicted pyruvate-flavodoxin oxidoreductase: conserved protein/conserved protein/FeS binding protein [Escherichia coli str. K-12 substr. MG1655] gi|89108224|ref|AP_002004.1| fused predicted Fe-S subunit of pyruvate-flavodoxin oxidoreductase [Escherichia coli str. K-12 substr. W3110] gi|170081055|ref|YP_001730375.1| fused pyruvate-flavodoxin oxidoreductase: protein; protein; FeS binding protein [Escherichia coli str. K-12 substr. DH10B] gi|238900607|ref|YP_002926403.1| fused putative pyruvate-flavodoxin oxidoreductase: hypothetical protein [Escherichia coli BW2952] gi|2506913|sp|P52647|NIFJ_ECOLI RecName: Full=Probable pyruvate-flavodoxin oxidoreductase gi|1742250|dbj|BAA14982.1| fused predicted Fe-S subunit of pyruvate-flavodoxin oxidoreductase [Escherichia coli str. K12 substr. W3110] gi|1787642|gb|AAC74460.1| fused predicted pyruvate-flavodoxin oxidoreductase: conserved protein/conserved protein/FeS binding protein [Escherichia coli str. K-12 substr. MG1655] gi|169888890|gb|ACB02597.1| fused predicted pyruvate-flavodoxin oxidoreductase: conserved protein; conserved protein; FeS binding protein [Escherichia coli str. K-12 substr. DH10B] gi|238861238|gb|ACR63236.1| fused predicted pyruvate-flavodoxin oxidoreductase: conserved protein/conserved protein/FeS binding protein [Escherichia coli BW2952] gi|260449493|gb|ACX39915.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Escherichia coli DH1] gi|315136019|dbj|BAJ43178.1| fused putative pyruvate-flavodoxinoxidoreductase: hypothetical protein [Escherichia coli DH1] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|15831254|ref|NP_310027.1| oxidoreductase [Escherichia coli O157:H7 str. Sakai] gi|168763116|ref|ZP_02788123.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str. EC4501] gi|217329277|ref|ZP_03445357.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str. TW14588] gi|13361465|dbj|BAB35423.1| putative oxidoreductase [Escherichia coli O157:H7 str. Sakai] gi|189366638|gb|EDU85054.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str. EC4501] gi|209771310|gb|ACI83967.1| putative oxidoreductase [Escherichia coli] gi|217317716|gb|EEC26144.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str. TW14588] gi|326340735|gb|EGD64532.1| Pyruvate-flavodoxin oxidoreductase [Escherichia coli O157:H7 str. 1044] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|194431874|ref|ZP_03064164.1| pyruvate-flavodoxin oxidoreductase [Shigella dysenteriae 1012] gi|194419782|gb|EDX35861.1| pyruvate-flavodoxin oxidoreductase [Shigella dysenteriae 1012] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|194436630|ref|ZP_03068731.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli 101-1] gi|194424662|gb|EDX40648.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli 101-1] gi|323973602|gb|EGB68784.1| ferredoxin oxidoreductase [Escherichia coli TA007] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|191165148|ref|ZP_03026992.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli B7A] gi|293433767|ref|ZP_06662195.1| pyruvate:ferredoxin oxidoreductase [Escherichia coli B088] gi|309797096|ref|ZP_07691494.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli MS 145-7] gi|190904920|gb|EDV64625.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli B7A] gi|291324586|gb|EFE64008.1| pyruvate:ferredoxin oxidoreductase [Escherichia coli B088] gi|308119266|gb|EFO56528.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli MS 145-7] gi|320199388|gb|EFW73979.1| Pyruvate-flavodoxin oxidoreductase [Escherichia coli EC4100B] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|188491773|ref|ZP_02999043.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli 53638] gi|188486972|gb|EDU62075.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli 53638] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|110641583|ref|YP_669313.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli 536] gi|191171078|ref|ZP_03032629.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli F11] gi|300972120|ref|ZP_07171832.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli MS 200-1] gi|110343175|gb|ABG69412.1| probable pyruvate-flavodoxin oxidoreductase [Escherichia coli 536] gi|190908810|gb|EDV68398.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli F11] gi|300309214|gb|EFJ63734.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli MS 200-1] gi|324011369|gb|EGB80588.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli MS 60-1] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|157160859|ref|YP_001458177.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli HS] gi|170020287|ref|YP_001725241.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [Escherichia coli ATCC 8739] gi|312971545|ref|ZP_07785720.1| pyruvate:ferredoxin oxidoreductase [Escherichia coli 1827-70] gi|157066539|gb|ABV05794.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli HS] gi|169755215|gb|ACA77914.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Escherichia coli ATCC 8739] gi|310336142|gb|EFQ01342.1| pyruvate:ferredoxin oxidoreductase [Escherichia coli 1827-70] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|157155711|ref|YP_001462656.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli E24377A] gi|193062584|ref|ZP_03043678.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli E22] gi|193067006|ref|ZP_03047975.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli E110019] gi|260843695|ref|YP_003221473.1| fused putative pyruvate-flavodoxin oxidoreductase: hypothetical protein/hypothetical protein/FeS binding protein [Escherichia coli O103:H2 str. 12009] gi|300825298|ref|ZP_07105380.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli MS 119-7] gi|331677225|ref|ZP_08377907.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli H591] gi|157077741|gb|ABV17449.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli E24377A] gi|192931706|gb|EDV84306.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli E22] gi|192959596|gb|EDV90030.1| pyruvate-flavodoxin oxidoreductase [Escherichia coli E110019] gi|257758842|dbj|BAI30339.1| fused predicted pyruvate-flavodoxin oxidoreductase: conserved protein/conserved protein/FeS binding protein [Escherichia coli O103:H2 str. 12009] gi|300522225|gb|EFK43294.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli MS 119-7] gi|323162440|gb|EFZ48292.1| pyruvate:ferredoxin oxidoreductase [Escherichia coli E128010] gi|324117639|gb|EGC11544.1| ferredoxin oxidoreductase [Escherichia coli E1167] gi|331075076|gb|EGI46389.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli H591] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|187733332|ref|YP_001880205.1| pyruvate-flavodoxin oxidoreductase [Shigella boydii CDC 3083-94] gi|187430324|gb|ACD09598.1| pyruvate-flavodoxin oxidoreductase [Shigella boydii CDC 3083-94] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|332702837|ref|ZP_08422925.1| electron transport complex protein RnfC [Desulfovibrio africanus str. Walvis Bay] gi|332552986|gb|EGJ50030.1| electron transport complex protein RnfC [Desulfovibrio africanus str. Walvis Bay] Length = 375 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 1/55 (1%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 C+ C C ICP++ G + D + C+ CGLC CP Sbjct: 301 PCMECGKCVRICPSRVDPGLLSGCAEFGLLKQAV-DNYIDACMECGLCAYVCPTH 354 >gi|330830240|ref|YP_004393192.1| putative NADH:ubiquinone oxidoreductase subunit RnfB [Aeromonas veronii B565] gi|328805376|gb|AEB50575.1| Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Aeromonas veronii B565] Length = 192 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 10/72 (13%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + E++CI C C CP AI + + + +C C LC Sbjct: 104 PVKKVAFIHEDQCIGCTKCIQACPVDAIVGATK----------AMHTVIANECTGCDLCV 153 Query: 111 EACPVDAIVEGP 122 + CP D I P Sbjct: 154 DPCPTDCIEMIP 165 >gi|307311274|ref|ZP_07590918.1| dihydroorotate dehydrogenase family protein [Escherichia coli W] gi|306908780|gb|EFN39277.1| dihydroorotate dehydrogenase family protein [Escherichia coli W] gi|315061456|gb|ADT75783.1| dihydropyrimidine dehydrogenase, NADH-dependent, subunit B [Escherichia coli W] gi|323377963|gb|ADX50231.1| dihydroorotate dehydrogenase family protein [Escherichia coli KO11] Length = 411 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + ++C+ C C C G + + + +T + K Sbjct: 324 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 378 CVGCLLCGHVCPVGCIELG 396 >gi|304409462|ref|ZP_07391082.1| D-lactate dehydrogenase (cytochrome) [Shewanella baltica OS183] gi|307303820|ref|ZP_07583573.1| D-lactate dehydrogenase (cytochrome) [Shewanella baltica BA175] gi|304351980|gb|EFM16378.1| D-lactate dehydrogenase (cytochrome) [Shewanella baltica OS183] gi|306912718|gb|EFN43141.1| D-lactate dehydrogenase (cytochrome) [Shewanella baltica BA175] Length = 934 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 6/78 (7%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 E + I + + D + KCI CG C++ CP A+ P AT Sbjct: 509 EGMLNPGVILNDDSTVHVKNIKPCPVVDDFVDKCIECGFCEKTCPTSALNFSPRQRIATL 568 Query: 130 TRQELYYDKERLLNNGDR 147 R+ ERL +GD+ Sbjct: 569 -RE-----IERLEQSGDK 580 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 26/75 (34%), Gaps = 16/75 (21%) Query: 57 PNGEERCIACKLCEAICPAQAITI----------------ESGPRCHDGTRRTVRYDIDM 100 + ++CI C CE CP A+ +SG + R + Sbjct: 536 DDFVDKCIECGFCEKTCPTSALNFSPRQRIATLREIERLEQSGDKAAAAEMRAAAKYDVV 595 Query: 101 IKCIYCGLCQEACPV 115 C C LC ACPV Sbjct: 596 DTCAACQLCTIACPV 610 >gi|224537012|ref|ZP_03677551.1| hypothetical protein BACCELL_01888 [Bacteroides cellulosilyticus DSM 14838] gi|224521379|gb|EEF90484.1| hypothetical protein BACCELL_01888 [Bacteroides cellulosilyticus DSM 14838] Length = 494 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 19/64 (29%), Gaps = 8/64 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RCI C C C ID C+ CGLC CP +AI Sbjct: 437 DSRRCIHCGRCYISCLDGGHQAIG--------WEKRTPMIDKSLCVGCGLCTLVCPTEAI 488 Query: 119 VEGP 122 Sbjct: 489 SLVN 492 >gi|242279479|ref|YP_002991608.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio salexigens DSM 2638] gi|242122373|gb|ACS80069.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio salexigens DSM 2638] Length = 142 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 35/76 (46%), Gaps = 9/76 (11%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R ++ +E C+ C +C A+CP A+++E R D+ KC CG Sbjct: 75 RLIPVAQKIARDDESCMHCGMCLAMCPTGALSLEKDTRLVL---------FDLEKCTACG 125 Query: 108 LCQEACPVDAIVEGPN 123 LC + CPV A+ P Sbjct: 126 LCTKVCPVRAMEVDPQ 141 >gi|209919605|ref|YP_002293689.1| dihydropyrimidine dehydrogenase [Escherichia coli SE11] gi|256017685|ref|ZP_05431550.1| dihydropyrimidine dehydrogenase [Shigella sp. D9] gi|260856120|ref|YP_003230011.1| putative oxidoreductase [Escherichia coli O26:H11 str. 11368] gi|260868849|ref|YP_003235251.1| putative oxidoreductase [Escherichia coli O111:H- str. 11128] gi|300822593|ref|ZP_07102731.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 119-7] gi|300902204|ref|ZP_07120204.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 84-1] gi|301306535|ref|ZP_07212599.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 124-1] gi|309793025|ref|ZP_07687453.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 145-7] gi|331668846|ref|ZP_08369694.1| putative oxidoreductase [Escherichia coli TA271] gi|331678095|ref|ZP_08378770.1| putative oxidoreductase [Escherichia coli H591] gi|209912864|dbj|BAG77938.1| putative dihydropyrimidine dehydrogenase [Escherichia coli SE11] gi|257754769|dbj|BAI26271.1| predicted oxidoreductase [Escherichia coli O26:H11 str. 11368] gi|257765205|dbj|BAI36700.1| predicted oxidoreductase [Escherichia coli O111:H- str. 11128] gi|300405723|gb|EFJ89261.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 84-1] gi|300524793|gb|EFK45862.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 119-7] gi|300838236|gb|EFK65996.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 124-1] gi|308123311|gb|EFO60573.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 145-7] gi|315255341|gb|EFU35309.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 85-1] gi|323152183|gb|EFZ38473.1| hypothetical protein ECEPECA14_5793 [Escherichia coli EPECa14] gi|323176957|gb|EFZ62547.1| hypothetical protein ECOK1180_4323 [Escherichia coli 1180] gi|323944963|gb|EGB41028.1| dihydroorotate dehydrogenase [Escherichia coli H120] gi|324020615|gb|EGB89834.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 117-3] gi|331064040|gb|EGI35951.1| putative oxidoreductase [Escherichia coli TA271] gi|331074555|gb|EGI45875.1| putative oxidoreductase [Escherichia coli H591] Length = 411 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + ++C+ C C C G + + + +T + K Sbjct: 324 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 378 CVGCLLCGHVCPVGCIELG 396 >gi|169796778|ref|YP_001714571.1| hypothetical protein ABAYE2765 [Acinetobacter baumannii AYE] gi|213156829|ref|YP_002318490.1| electron transport complex, rnfaBcdge type, B subunit [Acinetobacter baumannii AB0057] gi|239502943|ref|ZP_04662253.1| electron transport complex, rnfaBcdge type, B subunit [Acinetobacter baumannii AB900] gi|301345598|ref|ZP_07226339.1| electron transport complex, rnfaBcdge type, B subunit [Acinetobacter baumannii AB056] gi|301510039|ref|ZP_07235276.1| electron transport complex, rnfaBcdge type, B subunit [Acinetobacter baumannii AB058] gi|301597671|ref|ZP_07242679.1| electron transport complex, rnfaBcdge type, B subunit [Acinetobacter baumannii AB059] gi|169149705|emb|CAM87596.1| conserved hypothetical protein [Acinetobacter baumannii AYE] gi|213055989|gb|ACJ40891.1| electron transport complex, rnfaBcdge type, B subunit [Acinetobacter baumannii AB0057] Length = 263 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 28/87 (32%), Gaps = 10/87 (11%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P E + G + E+ CI C C CP AI + + Sbjct: 66 PAETSVWPVQADGRPQRMKAIIREDECIGCTKCINACPVDAIIGSGK----------LMH 115 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPN 123 I C C LC CPVD I + Sbjct: 116 TILTDLCTGCELCIPPCPVDCIDLVED 142 >gi|315615386|gb|EFU96018.1| uncharacterized protein yeiA [Escherichia coli 3431] Length = 399 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + ++C+ C C C G + + + +T + K Sbjct: 312 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 365 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 366 CVGCLLCGHVCPVGCIELG 384 >gi|291287597|ref|YP_003504413.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Denitrovibrio acetiphilus DSM 12809] gi|290884757|gb|ADD68457.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Denitrovibrio acetiphilus DSM 12809] Length = 1195 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 30/114 (26%), Gaps = 28/114 (24%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGP----------------RCHDGTRRT 93 A+ E CI C +C +CP AI + D Sbjct: 692 NIAVTIPEWESELCIQCGICSFVCPHAAIRTTVYEPSCLENAPSTFKSMDAKGKDFAGMK 751 Query: 94 VRYDIDMIKCIYCGLCQEACPV--------DAIVEGPNFEFATETRQELYYDKE 139 + C CG C CP AI P E R E + + Sbjct: 752 FTVQVAPEDCTGCGACVFNCPAKSKTDPTHKAINMKPQ----VERRDEEVVNFD 801 >gi|290475319|ref|YP_003468207.1| putative 4Fe-4S ferredoxin-type protein [Xenorhabdus bovienii SS-2004] gi|289174640|emb|CBJ81434.1| putative 4Fe-4S ferredoxin-type protein [Xenorhabdus bovienii SS-2004] Length = 205 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 28/90 (31%), Gaps = 10/90 (11%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 A + EE CI C C CP AI + + + C Sbjct: 99 DDSVQNPARKVAFIDEENCIGCTKCIQACPVDAIIGAN----------RAIHTVVEDLCT 148 Query: 105 YCGLCQEACPVDAIVEGPNFEFATETRQEL 134 C LC CP D I P + + +L Sbjct: 149 GCDLCVAPCPTDCITMIPVATTTSNWKWDL 178 >gi|251778561|ref|ZP_04821481.1| sulfite reductase, subunit C [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082876|gb|EES48766.1| sulfite reductase, subunit C [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 320 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 24/88 (27%), Gaps = 8/88 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + G + ++RC++C C C + Sbjct: 145 CPNDCIKARMHDFGIIGMTEPQYDKDRCVSCGACVRAC--------KKKSVDSLKAVNYK 196 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + KCI CG C CP A Sbjct: 197 VVRNEEKCIGCGECVINCPTGAWTRSKE 224 >gi|239817041|ref|YP_002945951.1| formate dehydrogenase, subunit alpha [Variovorax paradoxus S110] gi|239803618|gb|ACS20685.1| formate dehydrogenase, alpha subunit [Variovorax paradoxus S110] Length = 957 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 3/99 (3%) Query: 24 LRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG 83 L + K P K + + + + + CI C C C + + G Sbjct: 126 LSAWAKKLDIAVRPELKALRREQPKADISHPAMAVNLDACIQCNRCVRACREEQVNDVIG 185 Query: 84 PRCHDGTRRTVRY---DIDMIKCIYCGLCQEACPVDAIV 119 G + V + C+ CG C +ACP A++ Sbjct: 186 YALRGGDSKIVFDLDDPMGDSTCVACGECVQACPTGALM 224 >gi|218705675|ref|YP_002413194.1| dihydropyrimidine dehydrogenase [Escherichia coli UMN026] gi|293405615|ref|ZP_06649607.1| yeiA protein [Escherichia coli FVEC1412] gi|298381296|ref|ZP_06990895.1| yeiA protein [Escherichia coli FVEC1302] gi|300897797|ref|ZP_07116190.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 198-1] gi|331663649|ref|ZP_08364559.1| putative oxidoreductase [Escherichia coli TA143] gi|218432772|emb|CAR13666.1| putative oxidoreductase subunit [Escherichia coli UMN026] gi|291427823|gb|EFF00850.1| yeiA protein [Escherichia coli FVEC1412] gi|298278738|gb|EFI20252.1| yeiA protein [Escherichia coli FVEC1302] gi|300358512|gb|EFJ74382.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 198-1] gi|331059448|gb|EGI31425.1| putative oxidoreductase [Escherichia coli TA143] Length = 411 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + ++C+ C C C G + + + +T + K Sbjct: 324 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 378 CVGCLLCGHVCPVGCIELG 396 >gi|254476176|ref|ZP_05089562.1| formate dehydrogenase, alpha subunit [Ruegeria sp. R11] gi|214030419|gb|EEB71254.1| formate dehydrogenase, alpha subunit [Ruegeria sp. R11] Length = 924 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 5/65 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID----MIKCIYCGLCQEACP 114 + CI+C LC C + + G +DI C+ CG C +ACP Sbjct: 147 NLDACISCNLCVRACR-EVQVNDVIGMAGRGHDAYPVFDIADPMGQSSCVACGECVQACP 205 Query: 115 VDAIV 119 A++ Sbjct: 206 TGALM 210 >gi|189466801|ref|ZP_03015586.1| hypothetical protein BACINT_03177 [Bacteroides intestinalis DSM 17393] gi|189435065|gb|EDV04050.1| hypothetical protein BACINT_03177 [Bacteroides intestinalis DSM 17393] Length = 1185 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 27/81 (33%), Gaps = 15/81 (18%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG A N E CI C C +CP A T Sbjct: 676 RGVAAFVPEWN-AENCIQCNKCAYVCPHASIRPFVLDAEEQKGANFEMLKAVGKVFDGMT 734 Query: 94 VRYDIDMIKCIYCGLCQEACP 114 R +D++ C+ CG C + CP Sbjct: 735 FRIQVDVLDCLGCGNCADICP 755 >gi|182625172|ref|ZP_02952948.1| aminotransferase, class V [Clostridium perfringens D str. JGS1721] gi|177909631|gb|EDT72065.1| aminotransferase, class V [Clostridium perfringens D str. JGS1721] Length = 272 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 15/91 (16%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 +CI C LC C I + G I C+ CG C CP Sbjct: 1 MMNVDTSKCIGCTLCMQDCIVSDIEMLDGKAH-----------IKNESCMECGHCIAICP 49 Query: 115 VDAIVEGPNFEFA---TETRQELYYDKERLL 142 +A+ + +++ + ++ D +RLL Sbjct: 50 KEAVSDS-DYDMSKIQEYKKESFDIDSDRLL 79 >gi|172035869|ref|YP_001802370.1| pyruvate oxidoreductase [Cyanothece sp. ATCC 51142] gi|171697323|gb|ACB50304.1| pyruvate oxidoreductase [Cyanothece sp. ATCC 51142] Length = 1210 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 28/105 (26%), Gaps = 26/105 (24%) Query: 58 NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTV----RYDID 99 E+ C+ C C +CP A D + + Sbjct: 688 WDEDVCVQCGKCVLVCPHAVIRSKVYEEAALSNAPESFKSADAKDLDWKKTELKFTIQVA 747 Query: 100 MIKCIYCGLCQEACPV--------DAIVEGPNFEFATETRQELYY 136 C CG+C + CP AI P + R+ Y Sbjct: 748 AEDCTGCGVCVDVCPAKNKSQPKLKAINMAPQLPIREQERENWDY 792 >gi|167771609|ref|ZP_02443662.1| hypothetical protein ANACOL_02981 [Anaerotruncus colihominis DSM 17241] gi|167666249|gb|EDS10379.1| hypothetical protein ANACOL_02981 [Anaerotruncus colihominis DSM 17241] Length = 274 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 11/60 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI CK CE C AIT+ ID KC+ CG C ACP AI Sbjct: 212 CKNGCIGCKKCERTCEHGAITVTDNLAS-----------IDPEKCVNCGNCVTACPTGAI 260 Score = 36.2 bits (82), Expect = 1.3, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 5/70 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEAC 113 + C+ C +C CP Q IT+ + + CI C C+ C Sbjct: 167 DKAACVGCGMCAKACPNQLITVIPASSTVYVGCSSHDKGAFTRKVCKNGCIGCKKCERTC 226 Query: 114 PVDAIVEGPN 123 AI N Sbjct: 227 EHGAITVTDN 236 Score = 33.9 bits (76), Expect = 7.4, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 11/65 (16%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + C+ C C AI+I G ID C+ CG+C +ACP Sbjct: 137 SCSHGCLGYGDCINACQYGAISIVDGIAV-----------IDKAACVGCGMCAKACPNQL 185 Query: 118 IVEGP 122 I P Sbjct: 186 ITVIP 190 >gi|119473030|ref|ZP_01614852.1| electron transport complex protein RnfC [Alteromonadales bacterium TW-7] gi|119444608|gb|EAW25920.1| electron transport complex protein RnfC [Alteromonadales bacterium TW-7] Length = 780 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 4/103 (3%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C C CPA + + + ++ CI CG C CP I Sbjct: 377 CIRCSACADACPAS-LLPQQLQWFAKSKEYDKLQEHNLFDCIECGACAYVCP-SEIPLVQ 434 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVR--NIVTDSPYR 163 + A +E +K + +R+++ R D R Sbjct: 435 YYRVAKVEIKEQQAEKIKADRAKERFDARKERLEREQEDRKNR 477 >gi|114777066|ref|ZP_01452086.1| electron transport complex protein RnfC [Mariprofundus ferrooxydans PV-1] gi|114552587|gb|EAU55047.1| electron transport complex protein RnfC [Mariprofundus ferrooxydans PV-1] Length = 521 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 32/93 (34%), Gaps = 4/93 (4%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ-AITIESGPRCHDGTRRT 93 + P K + E + E+ CI C C CPA + + D + Sbjct: 358 DVPVVKSTNGMLAMLEASFMGGHTQEQACIRCGHCSEACPAGLVPNLLADQCRSDQFEKA 417 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 YD+ CI CG C CP I F + Sbjct: 418 ESYDLF--DCIECGACSYVCP-SNIPLVHYFRY 447 >gi|220932673|ref|YP_002509581.1| Cobyrinic acid ac-diamide synthase [Halothermothrix orenii H 168] gi|219993983|gb|ACL70586.1| Cobyrinic acid ac-diamide synthase [Halothermothrix orenii H 168] Length = 288 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 14/62 (22%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI C C +C AIT ++I+ IKC CG C CP DA+ Sbjct: 64 NPDLCIDCGYCRQVCNFNAITPG--------------FEINPIKCEGCGTCVAMCPQDAL 109 Query: 119 VE 120 Sbjct: 110 EL 111 Score = 34.3 bits (77), Expect = 6.3, Method: Composition-based stats. Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%) Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEF 126 + CI CG C++ C +AI P FE Sbjct: 64 NPDLCIDCGYCRQVCNFNAI--TPGFEI 89 >gi|331091232|ref|ZP_08340073.1| hypothetical protein HMPREF9477_00716 [Lachnospiraceae bacterium 2_1_46FAA] gi|330404679|gb|EGG84218.1| hypothetical protein HMPREF9477_00716 [Lachnospiraceae bacterium 2_1_46FAA] Length = 263 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 11/84 (13%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P+E+ + + CI CK+C+ +C AIT+E Sbjct: 191 VPYEQKHLVQCNSKDKGKDVMSACKAGCIGCKMCQKVCEYDAITVEDNIAH--------- 241 Query: 96 YDIDMIKCIYCGLCQEACPVDAIV 119 ID KC CG C E CP I+ Sbjct: 242 --IDPEKCTNCGACAEKCPKKIIM 263 Score = 35.1 bits (79), Expect = 3.2, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 5/70 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCH-----DGTRRTVRYDIDMIKCIYCGLCQEAC 113 +E C AC C A+CP I + + H + CI C +CQ+ C Sbjct: 169 DKEACKACGKCIAVCPQNLIELVPYEQKHLVQCNSKDKGKDVMSACKAGCIGCKMCQKVC 228 Query: 114 PVDAIVEGPN 123 DAI N Sbjct: 229 EYDAITVEDN 238 Score = 35.1 bits (79), Expect = 3.3, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 22/66 (33%), Gaps = 11/66 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + C C CP AI IE+G +D C CG C CP + Sbjct: 138 KSCNYGCHGFGTCVKACPFDAIHIENGVAV-----------VDKEACKACGKCIAVCPQN 186 Query: 117 AIVEGP 122 I P Sbjct: 187 LIELVP 192 >gi|300918787|ref|ZP_07135356.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 115-1] gi|300414030|gb|EFJ97340.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 115-1] Length = 411 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + ++C+ C C C G + + + +T + K Sbjct: 324 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 378 CVGCLLCGHVCPVGCIELG 396 >gi|167745819|ref|ZP_02417946.1| hypothetical protein ANACAC_00513 [Anaerostipes caccae DSM 14662] gi|167654850|gb|EDR98979.1| hypothetical protein ANACAC_00513 [Anaerostipes caccae DSM 14662] Length = 650 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 13/86 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 EE+CI C C+ IC + + R CI CG C CPV++I Sbjct: 23 HEEKCIKCGQCKNICKDYISVLGTYSLAETKDR---------AVCINCGQCANVCPVESI 73 Query: 119 VEGPNFEFATETRQELYYDKERLLNN 144 E + + +E D E+++ Sbjct: 74 TETYEY----QQVREAVKDPEKIVIV 95 >gi|218778152|ref|YP_002429470.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfatibacillum alkenivorans AK-01] gi|218759536|gb|ACL02002.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfatibacillum alkenivorans AK-01] Length = 434 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 16/100 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E+C C C CP AI + + + +R + +I++ CI CG+C C A Sbjct: 287 EDEKCTGCGKCAKACPINAIEMVADGDPNT--KRKKKPEINLELCIGCGVCGLDCKPSAC 344 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158 P R++ E +E I++++ Sbjct: 345 QLIP--------RKKRVITPET------TFERVILQSLER 370 Score = 41.2 bits (95), Expect = 0.046, Method: Composition-based stats. Identities = 12/24 (50%), Positives = 16/24 (66%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVE 120 DI+ KC CG C +ACP++AI Sbjct: 285 DIEDEKCTGCGKCAKACPINAIEM 308 >gi|163802832|ref|ZP_02196721.1| electron transport complex protein RnfC [Vibrio sp. AND4] gi|159173372|gb|EDP58195.1| electron transport complex protein RnfC [Vibrio sp. AND4] Length = 911 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 22/110 (20%), Positives = 37/110 (33%), Gaps = 14/110 (12%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 CI C C CPA + + ++++ CI CG C CP I Sbjct: 377 ECIRCSQCAEACPAS-LLPQQLQWYSKSQEYEKLEELNLKDCIECGACAFVCP-SEIPLV 434 Query: 122 PNF------------EFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 + E A R +L +++++ ++ E E D Sbjct: 435 QYYRQAKAEIRTRAQETAAAERAKLRFEEKKARMEREKLERENRFKKAAD 484 >gi|56412899|ref|YP_149974.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197361830|ref|YP_002141466.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127156|gb|AAV76662.1| putative dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093306|emb|CAR58754.1| putative dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 411 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + +E+C+ C C C G + + + + K Sbjct: 324 IPAEDLDRSYIVYPRINQEKCVGCGRCYISCYDG------GHQAMEWDEHSRTPHCNTEK 377 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 378 CVGCLLCGHVCPVACIDLG 396 >gi|317486534|ref|ZP_07945357.1| nitroreductase [Bilophila wadsworthia 3_1_6] gi|316922209|gb|EFV43472.1| nitroreductase [Bilophila wadsworthia 3_1_6] Length = 262 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 7/71 (9%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + ++ CI C C ++CP + + + + +CI CG C Sbjct: 1 MVSLELNQDHCIRCGRCISVCPQRILGRHTNGSVD-------VLHGALARCIRCGHCVAV 53 Query: 113 CPVDAIVEGPN 123 CP A+ Sbjct: 54 CPKAALTLEHI 64 >gi|300854120|ref|YP_003779104.1| pyruvate:ferredoxin oxidoreductase [Clostridium ljungdahlii DSM 13528] gi|300434235|gb|ADK14002.1| pyruvate:ferredoxin oxidoreductase [Clostridium ljungdahlii DSM 13528] Length = 1170 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 28/88 (31%), Gaps = 16/88 (18%) Query: 51 HALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY 96 A+ ++CI C C +CP +A + Sbjct: 676 IAINVPEWQVDKCIQCNQCSFVCPHAAIRPVLTTEEELAKAPQGFEAKDANGAKGLKFTM 735 Query: 97 DIDMIKCIYCGLCQEACP--VDAIVEGP 122 I + C CG C++ CP A+V P Sbjct: 736 AISPLDCSGCGNCEDVCPAKEKALVMKP 763 >gi|251789756|ref|YP_003004477.1| RnfABCDGE type electron transport complex subunit B [Dickeya zeae Ech1591] gi|247538377|gb|ACT06998.1| electron transport complex, RnfABCDGE type, B subunit [Dickeya zeae Ech1591] Length = 196 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 25/84 (29%), Gaps = 10/84 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E + + EE CI C C CP AI + + + Sbjct: 92 EPQPLDAGTPQKPEPQVAWIDEENCIGCTKCIQACPVDAIIGST----------RAVHTV 141 Query: 99 DMIKCIYCGLCQEACPVDAIVEGP 122 C C LC CP D I P Sbjct: 142 IRDLCTGCNLCVAPCPTDCIELRP 165 >gi|170767624|ref|ZP_02902077.1| dihydroorotate dehydrogenase family protein [Escherichia albertii TW07627] gi|170123958|gb|EDS92889.1| dihydroorotate dehydrogenase family protein [Escherichia albertii TW07627] Length = 411 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + ++C+ C C C G + + + +T + K Sbjct: 324 VPAEDLDRSYIVYPNINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPYCNTEK 377 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 378 CVGCLLCGHVCPVGCIDLG 396 >gi|218778023|ref|YP_002429341.1| glycyl-radical enzyme activating protein family [Desulfatibacillum alkenivorans AK-01] gi|218759407|gb|ACL01873.1| Pyruvate formate lyase activating enzyme [Desulfatibacillum alkenivorans AK-01] Length = 317 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 35/91 (38%), Gaps = 19/91 (20%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 AL + RCI C+ C +CP A+ + ID C CG C + Sbjct: 43 ALPQVQWIGSRCIGCRSCVEVCPHNALELTQEG-----------MQIDRGLCEGCGRCAD 91 Query: 112 ACPVDAIVEGPNFEFATETR--QELYYDKER 140 CP A+ E E R ++L + E+ Sbjct: 92 ECPSTAM------EMLGEDRTLEDLAAELEK 116 >gi|157737741|ref|YP_001490425.1| 4Fe-4S ferredoxin, iron-sulfur binding [Arcobacter butzleri RM4018] gi|157699595|gb|ABV67755.1| 4Fe-4S ferredoxin, iron-sulfur binding [Arcobacter butzleri RM4018] Length = 557 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 28/104 (26%), Gaps = 12/104 (11%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117 E C C C C A+ I+ C CG C+ +CP D Sbjct: 425 NEANCTLCLSCVGACNVDALFANEAD---------FTLRINPSLCTACGYCEVSCPEADC 475 Query: 118 IVEG-PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDS 160 + E +E K++L E + Sbjct: 476 LTITKDEIELQPSWFKENILAKDKLFA-CVECGKEFATTKAIEK 518 >gi|120611158|ref|YP_970836.1| RnfABCDGE type electron transport complex subunit B [Acidovorax citrulli AAC00-1] gi|120589622|gb|ABM33062.1| electron transport complex, RnfABCDGE type, B subunit [Acidovorax citrulli AAC00-1] Length = 243 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 21/64 (32%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C LC CP AI + + C C LC CPVD I Sbjct: 89 DELACIGCTLCIKACPTDAILGT----------HKRMHTVIEAHCTGCELCIPVCPVDCI 138 Query: 119 VEGP 122 Sbjct: 139 TMEN 142 Score = 38.5 bits (88), Expect = 0.34, Method: Composition-based stats. Identities = 13/25 (52%), Positives = 16/25 (64%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 ID + CI C LC +ACP DAI+ Sbjct: 88 IDELACIGCTLCIKACPTDAILGTH 112 >gi|90579149|ref|ZP_01234959.1| electron transport complex protein RnfB [Vibrio angustum S14] gi|90439982|gb|EAS65163.1| electron transport complex protein RnfB [Vibrio angustum S14] Length = 194 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 27/78 (34%), Gaps = 10/78 (12%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E+ CI C C CP AI + + + +C C LC CP D Sbjct: 108 FIHEDMCIGCTKCIQACPVDAIVGGTK----------SMHTVIKDECTGCDLCVAPCPTD 157 Query: 117 AIVEGPNFEFATETRQEL 134 I P E + +L Sbjct: 158 CIEMIPVKETPDNWKWQL 175 >gi|73668208|ref|YP_304223.1| glutamate synthase (NADPH) GltB2 subunit [Methanosarcina barkeri str. Fusaro] gi|72395370|gb|AAZ69643.1| glutamate synthase (NADPH) GltB2 subunit [Methanosarcina barkeri str. Fusaro] Length = 503 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 19/63 (30%), Gaps = 11/63 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++C+ C C C E I+ KC C C CP DAI Sbjct: 15 DRDQCMDCGRCIENCSYGVYRREGDKIL-----------IESRKCTGCLRCVAMCPRDAI 63 Query: 119 VEG 121 Sbjct: 64 TLT 66 >gi|333001282|gb|EGK20850.1| hypothetical protein SFVA6_3000 [Shigella flexneri VA-6] Length = 411 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + ++C+ C C C G + + + +T + K Sbjct: 324 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 378 CVGCLLCGHVCPVGCIELG 396 >gi|332278699|ref|ZP_08391112.1| dihydropyrimidine dehydrogenase [Shigella sp. D9] gi|332101051|gb|EGJ04397.1| dihydropyrimidine dehydrogenase [Shigella sp. D9] Length = 413 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + ++C+ C C C G + + + +T + K Sbjct: 326 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 379 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 380 CVGCLLCGHVCPVGCIELG 398 >gi|327479948|gb|AEA83258.1| electron transport complex, RnfABCDGE type, C subunit [Pseudomonas stutzeri DSM 4166] Length = 487 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 26/77 (33%), Gaps = 2/77 (2%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + CI C C CP +E R + + CI CG C CP Sbjct: 363 RSDSAPCIRCARCVDACPMGLAPLEMAART-RVDDFDGASEYGLRDCILCGCCAYVCPSH 421 Query: 117 AIVEGPNFEFATETRQE 133 I F++A + E Sbjct: 422 -IPLVQYFQYAVGQQDE 437 >gi|325290779|ref|YP_004266960.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Syntrophobotulus glycolicus DSM 8271] gi|324966180|gb|ADY56959.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Syntrophobotulus glycolicus DSM 8271] Length = 650 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 15/96 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 ++Y F+ + + ++ L +Y E+C C LC CPA I + Sbjct: 567 TIKY-FRPEYEAHIKEKRCPAHVCT----TLLKYSIDHEKCKRCGLCAKHCPAGCIFGD- 620 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + Y+I+ CI C C E C A+ Sbjct: 621 ---------KNTPYEIETENCIQCQTCLERCKFGAV 647 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 2/63 (3%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN--FEFA 127 + P I+ ++Y ID KC CGLC + CP I N +E Sbjct: 569 KYFRPEYEAHIKEKRCPAHVCTTLLKYSIDHEKCKRCGLCAKHCPAGCIFGDKNTPYEIE 628 Query: 128 TET 130 TE Sbjct: 629 TEN 631 >gi|320184421|gb|EFW59230.1| dihydropyrimidine dehydrogenase [Shigella flexneri CDC 796-83] Length = 282 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + ++C+ C C C G + + + +T + K Sbjct: 195 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 248 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 249 CVGCLLCGHVCPVGCIELG 267 >gi|239905762|ref|YP_002952501.1| iron-sulfur binding protein [Desulfovibrio magneticus RS-1] gi|239795626|dbj|BAH74615.1| iron-sulfur binding protein [Desulfovibrio magneticus RS-1] Length = 298 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RC C C A C A++ R + I+ C C +C CP AI Sbjct: 64 DPARCDGCGECAARCRYGAVSAADRDR----------FVINPAHCEGCKVCVVLCPRQAI 113 Query: 119 VEGP 122 + P Sbjct: 114 LFTP 117 >gi|239627406|ref|ZP_04670437.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239517552|gb|EEQ57418.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 251 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 30/83 (36%), Gaps = 14/83 (16%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 P G +R + P ++ CIAC LC CP AI ++ GT Sbjct: 154 QEPQVPGDRP--YRDWKQMPVVPLADDTCIACGLCAEQCPTGAIPADAPGTTDSGT---- 207 Query: 95 RYDIDMIKCIYCGLCQEACPVDA 117 C+ C C CPV A Sbjct: 208 --------CMLCMRCVAVCPVHA 222 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 17/38 (44%) Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 G R + ++ + CI CGLC E CP AI Sbjct: 159 PGDRPYRDWKQMPVVPLADDTCIACGLCAEQCPTGAIP 196 >gi|219871790|ref|YP_002476165.1| electron transport complex protein RnfC [Haemophilus parasuis SH0165] gi|219691994|gb|ACL33217.1| electron transport complex protein RnfC/NADH:ubiquinone oxidoreductase, subunit RnfC [Haemophilus parasuis SH0165] Length = 666 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 35/105 (33%), Gaps = 3/105 (2%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E CI C C CP + + + + CI CG+C CP Sbjct: 373 PEPERNCIRCSSCSDACPVG-LLPQQLYWFARAEDHDKSKEYHLDACIECGVCAYVCP-S 430 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVR-NIVTDS 160 I F QE+ ++ R+E+ R N ++ Sbjct: 431 YIPLIQYFRQEKAKIQEVDQKAKQAEEAKIRFEAREARLNKEKEA 475 >gi|169333814|ref|ZP_02861007.1| hypothetical protein ANASTE_00200 [Anaerofustis stercorihominis DSM 17244] gi|169259379|gb|EDS73345.1| hypothetical protein ANASTE_00200 [Anaerofustis stercorihominis DSM 17244] Length = 505 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 5/61 (8%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-----IDMIKCIYCGLCQEACPVDA 117 C+ C+ + P V ++ I+ KC+ CG C EACP +A Sbjct: 103 CMQCEENTVFVTNNCRGCYAHPCSEVCPVDAVYFENGKSVINKDKCVRCGRCVEACPYNA 162 Query: 118 I 118 I Sbjct: 163 I 163 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 6/63 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112 +++C+ C C CP AI P D ID KC+ CG C A Sbjct: 144 NKDKCVRCGRCVEACPYNAIVKFDRPCKASCGVNAYTEDEEGNAKIDYEKCVSCGQCIVA 203 Query: 113 CPV 115 CP Sbjct: 204 CPF 206 >gi|126701030|ref|YP_001089927.1| putative iron-only hydrogenase, catalytic subunit [Clostridium difficile 630] gi|255102610|ref|ZP_05331587.1| putative iron-only hydrogenase, catalytic subunit [Clostridium difficile QCD-63q42] gi|255308436|ref|ZP_05352607.1| putative iron-only hydrogenase, catalytic subunit [Clostridium difficile ATCC 43255] gi|115252467|emb|CAJ70310.1| putative iron-only hydrogenase, catalytic subunit HymC-like [Clostridium difficile] Length = 593 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 3/68 (4%) Query: 59 GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPV 115 +CI C+ CE +C Q + SG T + + D+ +C +CG C CP Sbjct: 147 DHSKCILCRRCETVCNDIQTVGALSGVNRGFNTLVSTFFNSDMVETECTFCGQCISVCPT 206 Query: 116 DAIVEGPN 123 A+ E N Sbjct: 207 GALTEVDN 214 >gi|146281701|ref|YP_001171854.1| electron transport complex, RnfABCDGE type, C subunit [Pseudomonas stutzeri A1501] gi|25136601|emb|CAC03726.2| rnfC protein [Pseudomonas stutzeri] gi|145569906|gb|ABP79012.1| electron transport complex, RnfABCDGE type, C subunit [Pseudomonas stutzeri A1501] Length = 487 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 26/77 (33%), Gaps = 2/77 (2%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + CI C C CP +E R + + CI CG C CP Sbjct: 363 RSDSAPCIRCARCVDACPMGLAPLEMAART-RVDDFDGASEYGLRDCILCGCCAYVCPSH 421 Query: 117 AIVEGPNFEFATETRQE 133 I F++A + E Sbjct: 422 -IPLVQYFQYAVGQQDE 437 >gi|89067229|ref|ZP_01154742.1| formate dehydrogenase, alpha subunit [Oceanicola granulosus HTCC2516] gi|89046798|gb|EAR52852.1| formate dehydrogenase, alpha subunit [Oceanicola granulosus HTCC2516] Length = 924 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 5/65 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114 + CI C LC C + + G + +D + C+ CG C +ACP Sbjct: 147 NLDACIQCGLCVRACR-EVQVNDVIGMAGRGHQAFPVFDLDDPMGDSTCVACGECVQACP 205 Query: 115 VDAIV 119 A++ Sbjct: 206 TGALM 210 >gi|121606904|ref|YP_984233.1| dihydropyrimidine dehydrogenase [Polaromonas naphthalenivorans CJ2] gi|120595873|gb|ABM39312.1| dihydrouracil dehydrogenase (NAD+) / dihydropyrimidine dehydrogenase (NADP+) [Polaromonas naphthalenivorans CJ2] Length = 435 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 6/65 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117 ++ CI+C C A S +++ +C+ C LC CPV Sbjct: 343 DQDSCISCGRCHI-----ACEDTSHQAISAMKDGKRHFEVKEDECVGCNLCALVCPVPEC 397 Query: 118 IVEGP 122 I Sbjct: 398 ITLRD 402 >gi|114567439|ref|YP_754593.1| ferredoxin hydrogenase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338374|gb|ABI69222.1| Ferredoxin hydrogenase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 387 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 28/60 (46%), Gaps = 10/60 (16%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C AC C ICP AI+ E G + H I KCI CG C CP +AI E Sbjct: 14 DDCKACDHCTFICPTGAISGELGQKHH----------ISPKKCINCGQCLINCPFNAIDE 63 >gi|331662865|ref|ZP_08363775.1| putative pyruvate-flavodoxin oxidoreductase [Escherichia coli TA143] gi|331058664|gb|EGI30641.1| putative pyruvate-flavodoxin oxidoreductase [Escherichia coli TA143] Length = 593 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 65 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 118 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 119 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 178 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 179 RQNPEIKAINMMSRLEHVEEEK 200 >gi|229488683|ref|ZP_04382549.1| NADPH-ferredoxin reductase fpra [Rhodococcus erythropolis SK121] gi|229324187|gb|EEN89942.1| NADPH-ferredoxin reductase fpra [Rhodococcus erythropolis SK121] Length = 543 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 3/54 (5%) Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 +CP I T ID CI CG C + CPV+AI + Sbjct: 1 MCPVNCIHPTPDEAP---FATTEMLYIDPDTCIDCGACVDECPVEAIFPDNELD 51 >gi|255657360|ref|ZP_05402769.1| putative iron-only hydrogenase, catalytic subunit [Clostridium difficile QCD-23m63] gi|296451826|ref|ZP_06893545.1| periplasmic hydrogenase [Clostridium difficile NAP08] gi|296879778|ref|ZP_06903752.1| periplasmic hydrogenase [Clostridium difficile NAP07] gi|296259305|gb|EFH06181.1| periplasmic hydrogenase [Clostridium difficile NAP08] gi|296429249|gb|EFH15122.1| periplasmic hydrogenase [Clostridium difficile NAP07] Length = 593 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 3/68 (4%) Query: 59 GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPV 115 +CI C+ CE +C Q + SG T + + D+ +C +CG C CP Sbjct: 147 DHSKCILCRRCETVCNDIQTVGALSGVNRGFNTLVSTFFNSDMVETECTFCGQCISVCPT 206 Query: 116 DAIVEGPN 123 A+ E N Sbjct: 207 GALTEVDN 214 >gi|289208952|ref|YP_003461018.1| electron transporter subunit B [Thioalkalivibrio sp. K90mix] gi|288944583|gb|ADC72282.1| electron transport complex, RnfABCDGE type, B subunit [Thioalkalivibrio sp. K90mix] Length = 194 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 31/91 (34%), Gaps = 10/91 (10%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100 +P E E CI C LC CP AI + + + Sbjct: 90 REPTPLEEEEQEKAVAVIDENICIGCTLCIQACPVDAILGAAKQ----------MHTVIE 139 Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 +C C LC E CPVD I P TE R Sbjct: 140 EECTGCELCIEPCPVDCIEMVPVQTDITEWR 170 >gi|169633882|ref|YP_001707618.1| hypothetical protein ABSDF2362 [Acinetobacter baumannii SDF] gi|169152674|emb|CAP01675.1| conserved hypothetical protein [Acinetobacter baumannii] Length = 263 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 28/87 (32%), Gaps = 10/87 (11%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P E + G + E+ CI C C CP AI + + Sbjct: 66 PAETSVWPVQADGRPQRMKAIIREDECIGCTKCINACPVDAIIGSGK----------LMH 115 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPN 123 I C C LC CPVD I + Sbjct: 116 TILTDLCTGCELCIPPCPVDCIDLVED 142 >gi|188587369|ref|YP_001918914.1| Indolepyruvate ferredoxin oxidoreductase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179352056|gb|ACB86326.1| Indolepyruvate ferredoxin oxidoreductase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 612 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 6/64 (9%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + CI C+ C + ++ ID C+ C +C + CP Sbjct: 544 HFYVNPNVCIGCRNCVK------TNCPPIKMTEYPNQDKLKSFIDPDVCVGCSVCSQVCP 597 Query: 115 VDAI 118 V+AI Sbjct: 598 VEAI 601 >gi|254977029|ref|ZP_05273501.1| putative iron-only hydrogenase, catalytic subunit [Clostridium difficile QCD-66c26] gi|255094356|ref|ZP_05323834.1| putative iron-only hydrogenase, catalytic subunit [Clostridium difficile CIP 107932] gi|255316109|ref|ZP_05357692.1| putative iron-only hydrogenase, catalytic subunit [Clostridium difficile QCD-76w55] gi|255518770|ref|ZP_05386446.1| putative iron-only hydrogenase, catalytic subunit [Clostridium difficile QCD-97b34] gi|255651948|ref|ZP_05398850.1| putative iron-only hydrogenase, catalytic subunit [Clostridium difficile QCD-37x79] gi|260684912|ref|YP_003216197.1| putative iron-only hydrogenase, catalytic subunit [Clostridium difficile CD196] gi|260688570|ref|YP_003219704.1| putative iron-only hydrogenase, catalytic subunit [Clostridium difficile R20291] gi|306521697|ref|ZP_07408044.1| putative iron-only hydrogenase, catalytic subunit [Clostridium difficile QCD-32g58] gi|260211075|emb|CBA66447.1| putative iron-only hydrogenase, catalytic subunit [Clostridium difficile CD196] gi|260214587|emb|CBE07153.1| putative iron-only hydrogenase, catalytic subunit [Clostridium difficile R20291] Length = 593 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 3/68 (4%) Query: 59 GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPV 115 +CI C+ CE +C Q + SG T + + D+ +C +CG C CP Sbjct: 147 DHSKCILCRRCETVCNDIQTVGALSGVNRGFNTLVSTFFNSDMVETECTFCGQCISVCPT 206 Query: 116 DAIVEGPN 123 A+ E N Sbjct: 207 GALTEVDN 214 >gi|77918551|ref|YP_356366.1| pyruvate-formate lyase-activating enzyme [Pelobacter carbinolicus DSM 2380] gi|77544634|gb|ABA88196.1| pyruvate-formate lyase-activating enzyme [Pelobacter carbinolicus DSM 2380] Length = 318 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 5/60 (8%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++C++C C A+CP +ES R CI CG C + CP A+ Sbjct: 58 DQCVSCGKCLAVCPNGVHAMESVANGSSQHRVERSVT-----CIGCGACAKVCPAKALRI 112 >gi|53802986|ref|YP_115287.1| electron transport complex protein RnfB [Methylococcus capsulatus str. Bath] gi|53756747|gb|AAU91038.1| electron transport complex, B subunit [Methylococcus capsulatus str. Bath] Length = 178 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 31/93 (33%), Gaps = 10/93 (10%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E + E E +CI C LC CP AI + + + + Sbjct: 88 EPKPLNDEHGAEKPESVAVIDETKCIGCTLCIQACPVDAILGAAK----------LMHTV 137 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 +C C LC CPVD I P E R Sbjct: 138 IASECTGCELCIAPCPVDCIAMEPVRENLGTWR 170 >gi|16081719|ref|NP_394099.1| pyruvate ferredoxin oxidoreductase, delta subunit related protein [Thermoplasma acidophilum DSM 1728] gi|10639794|emb|CAC11766.1| pyruvate ferredoxin oxidoreductase, delta subunit related protein [Thermoplasma acidophilum] Length = 96 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 2/71 (2%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR--RTVRYDIDMIKCIYCGLC 109 ++R ++CI C +C CP AI IE+G + R + ID C CG+C Sbjct: 20 RIQRPTIQYDKCIRCMICWKYCPDNAINIENGNKEAPNERIAKMEYPVIDYNFCKGCGIC 79 Query: 110 QEACPVDAIVE 120 CP I Sbjct: 80 ANECPEKCIDM 90 >gi|148259621|ref|YP_001233748.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Acidiphilium cryptum JF-5] gi|326402829|ref|YP_004282910.1| putative NADH ubiquinone oxidoreductase [Acidiphilium multivorum AIU301] gi|146401302|gb|ABQ29829.1| NADH ubiquinone oxidoreductase, 20 kDa subunit [Acidiphilium cryptum JF-5] gi|325049690|dbj|BAJ80028.1| putative NADH ubiquinone oxidoreductase [Acidiphilium multivorum AIU301] Length = 264 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 4/68 (5%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 CEA C A + +G G R + Y +C+ C C E CP A+ E ++ F Sbjct: 39 GRCEAGCEVCAASCPTGAIGLAGARIALDY----GRCVVCQRCVETCPTGALAESRDWAF 94 Query: 127 ATETRQEL 134 TR +L Sbjct: 95 GARTRDDL 102 >gi|327399376|ref|YP_004340245.1| cobyrinic acid ac-diamide synthase [Hippea maritima DSM 10411] gi|327182005|gb|AEA34186.1| Cobyrinic acid ac-diamide synthase [Hippea maritima DSM 10411] Length = 289 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 13/85 (15%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 K F+G + +C+ C LC +C AI I Y +D Sbjct: 49 KLKHKELFKGNPKAIIDVD---KCVKCDLCRRLCRFDAIHINPDGN----------YYVD 95 Query: 100 MIKCIYCGLCQEACPVDAIVEGPNF 124 +KC C LC+ ACP +AI + Sbjct: 96 ELKCDSCELCKVACPTEAIAMNEVY 120 >gi|325525301|gb|EGD03152.1| dihydropyrimidine dehydrogenase subunit B [Burkholderia sp. TJI49] Length = 438 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 6/76 (7%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + ++RCI C LC C + ++ R DG R +++ +C+ Sbjct: 328 KYLNLQYDIKARIDQDRCIQCGLCHIACED--TSHQAITREKDGVR---HFEVVDAECVG 382 Query: 106 CGLCQEACPV-DAIVE 120 C LC CPV I Sbjct: 383 CNLCMHVCPVEQCITM 398 >gi|309788035|ref|ZP_07682644.1| uncharacterized protein yeiA [Shigella dysenteriae 1617] gi|308924169|gb|EFP69667.1| uncharacterized protein yeiA [Shigella dysenteriae 1617] Length = 411 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + ++C+ C C C G + + + +T + K Sbjct: 324 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 378 CVGCLLCGHVCPVGCIELG 396 >gi|260867830|ref|YP_003234232.1| fused putative pyruvate-flavodoxin oxidoreductase: hypothetical protein/hypothetical protein/FeS binding protein [Escherichia coli O111:H- str. 11128] gi|257764186|dbj|BAI35681.1| fused predicted pyruvate-flavodoxin oxidoreductase: conserved protein/conserved protein/FeS binding protein [Escherichia coli O111:H- str. 11128] gi|323178140|gb|EFZ63719.1| pyruvate:ferredoxin oxidoreductase [Escherichia coli 1180] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGSWPMGTTRWEKRNIAEEIPTWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|260855108|ref|YP_003228999.1| fused putative pyruvate-flavodoxin oxidoreductase: conserved protein/conserved protein/FeS binding protein [Escherichia coli O26:H11 str. 11368] gi|257753757|dbj|BAI25259.1| fused predicted pyruvate-flavodoxin oxidoreductase: conserved protein/conserved protein/FeS binding protein [Escherichia coli O26:H11 str. 11368] gi|323157325|gb|EFZ43442.1| pyruvate:ferredoxin oxidoreductase [Escherichia coli EPECa14] Length = 1174 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGSWPMGTTRWEKRNIAEEIPTWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|255010822|ref|ZP_05282948.1| putative pyruvate-flavodoxin oxidoreductase [Bacteroides fragilis 3_1_12] gi|313148624|ref|ZP_07810817.1| pyruvate-flavodoxin oxidoreductase [Bacteroides fragilis 3_1_12] gi|313137391|gb|EFR54751.1| pyruvate-flavodoxin oxidoreductase [Bacteroides fragilis 3_1_12] Length = 1184 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 28/81 (34%), Gaps = 15/81 (18%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG A N E CI C C +CP A + T Sbjct: 676 RGVAAFVPEWN-AENCIQCNKCAYVCPHASIRPFVLDAEEQKGASFEQLKAVGKAFDGMT 734 Query: 94 VRYDIDMIKCIYCGLCQEACP 114 R +D++ C+ CG C + CP Sbjct: 735 FRIQVDVLDCLGCGNCADICP 755 >gi|118444231|ref|YP_878756.1| anaerobic sulfite reductase subunit C [Clostridium novyi NT] gi|118134687|gb|ABK61731.1| anaerobic sulfite reductase subunit C [Clostridium novyi NT] Length = 316 Score = 47.4 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 23/88 (26%), Gaps = 8/88 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + + G + RCI+C C C + Sbjct: 145 CPNDCIKSRMHDFGIIGMTMPNYESYRCISCGACVRTC--------KKKSVGALHFENFK 196 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + KCI CG C CP A Sbjct: 197 VVRNQEKCIGCGECVIQCPTGAWTRSHE 224 >gi|315637523|ref|ZP_07892731.1| iron-sulfur cluster-binding domain protein [Arcobacter butzleri JV22] gi|315478182|gb|EFU68907.1| iron-sulfur cluster-binding domain protein [Arcobacter butzleri JV22] Length = 557 Score = 47.0 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 28/104 (26%), Gaps = 12/104 (11%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117 E C C C C A+ I+ C CG C+ +CP D Sbjct: 425 NEANCTLCLSCVGACNVDALFANEAD---------FTLRINPSLCTACGYCEVSCPEADC 475 Query: 118 IVEG-PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDS 160 + E +E K++L E + Sbjct: 476 LTITKDEIELQPSWFKENILAKDKLFA-CVECGKEFATTKAIEK 518 >gi|300245649|gb|ADJ93882.1| putative benzylsuccinate synthase BssD [Clostridia bacterium enrichment culture clone BF] Length = 312 Score = 47.0 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 29/102 (28%), Gaps = 19/102 (18%) Query: 19 AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78 F + F + P+ S + L ++C C C +C A Sbjct: 19 GFRTTI---FLKGCPLRCPWCHNPDSQDPEKQILL-----DMDKCTGCGACIQVCSNGAC 70 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E + CI CG C EACP A Sbjct: 71 RQEGESII-----------FERSLCIKCGRCVEACPASAREM 101 >gi|301024363|ref|ZP_07188052.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 196-1] gi|299880460|gb|EFI88671.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 196-1] Length = 411 Score = 47.0 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + ++C+ C C C G + + + +T + K Sbjct: 324 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 378 CVGCLLCGHVCPVGCIELG 396 >gi|295096019|emb|CBK85109.1| electron transport complex, RnfABCDGE type, C subunit [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 673 Score = 47.0 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 38/111 (34%), Gaps = 15/111 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ CI C C CPA + + G ++ CI CG C CP Sbjct: 373 EEKGCIRCSACADACPAD-LLPQQLYWYSKGQLHDKAQAHNLADCIECGACAWVCP---- 427 Query: 119 VEGPNFEFATETRQE------LYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 N RQE + +++R R+E+ R + + R Sbjct: 428 ---SNIPLVQYFRQEKAEIYAISMEEKRAAEAKARFEARQAR-LEREKQAR 474 >gi|256826478|ref|YP_003150437.1| formate dehydrogenase, alpha subunit [Cryptobacterium curtum DSM 15641] gi|256582621|gb|ACU93755.1| formate dehydrogenase, alpha subunit, archaeal-type [Cryptobacterium curtum DSM 15641] Length = 906 Score = 47.0 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 28/85 (32%), Positives = 35/85 (41%), Gaps = 6/85 (7%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQA--ITIESGPRCHDGTRRTVRYDIDMIK 102 P + G L+ PN CI C+ C C QA TI++G + T D Sbjct: 135 PIYDGNPFLQFDPN---LCIRCQRCVGACNNQARNHTIQTGKKGMRTTILAPFGDDWEST 191 Query: 103 -CIYCGLCQEACPVDAIVEGPNFEF 126 C CG C ACP AIVE + Sbjct: 192 TCESCGCCAAACPTGAIVEKRRHSY 216 >gi|261343671|ref|ZP_05971316.1| electron transport complex protein RnfC [Providencia rustigianii DSM 4541] gi|282568054|gb|EFB73589.1| electron transport complex protein RnfC [Providencia rustigianii DSM 4541] Length = 779 Score = 47.0 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 1/52 (1%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 CI C LC CPA + + G ++ CI CG C CP Sbjct: 378 CIRCGLCVDACPAG-LLPQQLYWFSKGDEHEKAQKHNLFDCIECGACAYVCP 428 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 9/15 (60%), Positives = 10/15 (66%) Query: 100 MIKCIYCGLCQEACP 114 CI CGLC +ACP Sbjct: 375 EEACIRCGLCVDACP 389 >gi|225174228|ref|ZP_03728227.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Dethiobacter alkaliphilus AHT 1] gi|225170013|gb|EEG78808.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Dethiobacter alkaliphilus AHT 1] Length = 1174 Score = 47.0 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 28/84 (33%), Gaps = 18/84 (21%) Query: 57 PNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRYDID--M 100 ++CI C C ICP +A + ++Y I Sbjct: 682 EWQIDKCIQCGQCAYICPHATIRAYLLDDEEVQRAPDTFKTKKASGKGLEDLQYRIQVAP 741 Query: 101 IKCIYCGLCQEACPV--DAIVEGP 122 + C CG C + CP A++ P Sbjct: 742 MDCTGCGNCADVCPAKGKALIMKP 765 >gi|224368769|ref|YP_002602930.1| NuoF [Desulfobacterium autotrophicum HRM2] gi|223691485|gb|ACN14768.1| NuoF [Desulfobacterium autotrophicum HRM2] Length = 595 Score = 47.0 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 36/97 (37%), Gaps = 15/97 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 LRY F+ + + ++ L ++ E C C LC CPA AI Sbjct: 514 TLRY-FRDEYEAHIEEKRCPAKIC----PDLVKFEVDPELCKRCGLCHKGCPADAIIW-- 566 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 ++ ID KCI C C CP DAI Sbjct: 567 --------KKKQVAVIDKEKCIKCMSCYARCPFDAIF 595 Score = 38.2 bits (87), Expect = 0.38, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 8/62 (12%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 IE V++++D C CGLC + CP DAI+ +Q DK Sbjct: 525 HIEEKRCPAKICPDLVKFEVDPELCKRCGLCHKGCPADAIIWK--------KKQVAVIDK 576 Query: 139 ER 140 E+ Sbjct: 577 EK 578 >gi|224372293|ref|YP_002606665.1| pyruvate flavodoxin oxidoreductase subunit delta [Nautilia profundicola AmH] gi|223589605|gb|ACM93341.1| 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate [Nautilia profundicola AmH] Length = 134 Score = 47.0 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 1/59 (1%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C C CP +E G ++ I+ C CG+C E CP Sbjct: 51 YNRELCIDCDFCWVACPDSCFEVEEVVN-KRGKKQAKIVGINYNLCKGCGVCVEVCPTP 108 >gi|219852538|ref|YP_002466970.1| protein of unknown function DUF362 [Methanosphaerula palustris E1-9c] gi|219546797|gb|ACL17247.1| protein of unknown function DUF362 [Methanosphaerula palustris E1-9c] Length = 383 Score = 47.0 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 33/91 (36%), Gaps = 11/91 (12%) Query: 28 FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH 87 FK ++++ R R RC C C CP +AIT+ Sbjct: 290 FKMPSSMSLARVPPFVLSCARRVLG-TRPVVDRARCTRCGTCRDNCPPEAITM------- 341 Query: 88 DGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + ID +CI C CQE CP AI Sbjct: 342 ---KVGDYPMIDQSRCIACFCCQELCPAGAI 369 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 20/39 (51%), Gaps = 1/39 (2%) Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVE-GPNFEFATETR 131 R +D +C CG C++ CP +AI ++ ++R Sbjct: 315 TRPVVDRARCTRCGTCRDNCPPEAITMKVGDYPMIDQSR 353 >gi|187935770|ref|YP_001887225.1| sulfite reductase, subunit C [Clostridium botulinum B str. Eklund 17B] gi|187723923|gb|ACD25144.1| sulfite reductase, subunit C [Clostridium botulinum B str. Eklund 17B] Length = 320 Score = 47.0 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 24/88 (27%), Gaps = 8/88 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + G + ++RC++C C C + Sbjct: 145 CPNDCIKARMHDFGIIGMTEPQYDKDRCVSCGACVRAC--------KKKSVDALKAVNYK 196 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + KCI CG C CP A Sbjct: 197 IVRNEEKCIGCGECVINCPTGAWTRSKE 224 >gi|167856054|ref|ZP_02478797.1| electron transport complex protein RnfC [Haemophilus parasuis 29755] gi|167852803|gb|EDS24074.1| electron transport complex protein RnfC [Haemophilus parasuis 29755] Length = 629 Score = 47.0 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 35/105 (33%), Gaps = 3/105 (2%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E CI C C CP + + + + CI CG+C CP Sbjct: 373 PEPERNCIRCSSCSDACPVD-LLPQQLYWFARAEDHDKSKEYHLDACIECGVCAYVCP-S 430 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVR-NIVTDS 160 I F QE+ ++ R+E+ R N ++ Sbjct: 431 YIPLIQYFRQEKAKIQEVDQKAKQAEEAKIRFEAREARLNKEKEA 475 >gi|170019536|ref|YP_001724490.1| dihydropyrimidine dehydrogenase [Escherichia coli ATCC 8739] gi|169754464|gb|ACA77163.1| dihydroorotate dehydrogenase family protein [Escherichia coli ATCC 8739] Length = 411 Score = 47.0 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + ++C+ C C C G + + + +T + K Sbjct: 324 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 378 CVGCLLCGHVCPVGCIELG 396 >gi|158522075|ref|YP_001529945.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfococcus oleovorans Hxd3] gi|158510901|gb|ABW67868.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus oleovorans Hxd3] Length = 355 Score = 47.0 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 10/70 (14%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 A + C C+ C C AI + + +D+ +CI CGLC Sbjct: 267 FANHYAQVDTDECTGCEACLDRCQMGAIRLNADDVAE----------VDLNRCIGCGLCV 316 Query: 111 EACPVDAIVE 120 CP AI Sbjct: 317 TTCPTQAITL 326 Score = 33.5 bits (75), Expect = 9.1, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 4/64 (6%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 N C C C + A ++ PR + +D +C C C + C + Sbjct: 237 QNPAGMCNCCGDCCGVLVA----LKKHPRPAEIVFANHYAQVDTDECTGCEACLDRCQMG 292 Query: 117 AIVE 120 AI Sbjct: 293 AIRL 296 >gi|73748837|ref|YP_308076.1| glutamate synthase, alpha subunit [Dehalococcoides sp. CBDB1] gi|73660553|emb|CAI83160.1| glutamate synthase, alpha subunit [Dehalococcoides sp. CBDB1] Length = 500 Score = 47.0 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 12/89 (13%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 +RCI CK+C C ++ + + C+ C C CP A+V Sbjct: 16 DRCIKCKVCITQCSFDTHYYDADDD---------QIKVRNQNCVGCHRCVTFCPTGALVV 66 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWE 149 N E RQ + E + + + E Sbjct: 67 RNN---PLEYRQNANWTPEMIEDIFKQAE 92 >gi|15921432|ref|NP_377101.1| ferredoxin [Sulfolobus tokodaii str. 7] gi|17366271|sp|P58331|FER2_SULTO RecName: Full=Zinc-containing ferredoxin-2 gi|15622218|dbj|BAB66210.1| 104aa long ferredoxin [Sulfolobus tokodaii str. 7] Length = 104 Score = 47.0 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 2/64 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CIA C CP P ++ I+ CI+C C CPV AI Sbjct: 42 DFDVCIADGSCINACPVNVFQWFDTPGHPASEKKADP--INEKACIFCMACVNVCPVAAI 99 Query: 119 VEGP 122 P Sbjct: 100 DVKP 103 >gi|89108964|ref|AP_002744.1| predicted oxidoreductase [Escherichia coli str. K-12 substr. W3110] gi|90111398|ref|NP_416652.4| Dihydropyrimidine dehydrogenase, NADH-dependent, subunit B [Escherichia coli str. K-12 substr. MG1655] gi|157161627|ref|YP_001458945.1| dihydropyrimidine dehydrogenase [Escherichia coli HS] gi|161367574|ref|NP_288730.2| dihydropyrimidine dehydrogenase [Escherichia coli O157:H7 EDL933] gi|161986503|ref|YP_311088.2| dihydropyrimidine dehydrogenase [Shigella sonnei Ss046] gi|162139776|ref|NP_311066.2| dihydropyrimidine dehydrogenase [Escherichia coli O157:H7 str. Sakai] gi|168750527|ref|ZP_02775549.1| dihydroorotate dehydrogenase family protein [Escherichia coli O157:H7 str. EC4113] gi|168757729|ref|ZP_02782736.1| dihydroorotate dehydrogenase family protein [Escherichia coli O157:H7 str. EC4401] gi|168763803|ref|ZP_02788810.1| dihydroorotate dehydrogenase family protein [Escherichia coli O157:H7 str. EC4501] gi|168767760|ref|ZP_02792767.1| dihydroorotate dehydrogenase family protein [Escherichia coli O157:H7 str. EC4486] gi|168773142|ref|ZP_02798149.1| dihydroorotate dehydrogenase family protein [Escherichia coli O157:H7 str. EC4196] gi|168779990|ref|ZP_02804997.1| dihydroorotate dehydrogenase family protein [Escherichia coli O157:H7 str. EC4076] gi|168788957|ref|ZP_02813964.1| dihydroorotate dehydrogenase family protein [Escherichia coli O157:H7 str. EC869] gi|168801164|ref|ZP_02826171.1| dihydroorotate dehydrogenase family protein [Escherichia coli O157:H7 str. EC508] gi|170081770|ref|YP_001731090.1| oxidoreductase [Escherichia coli str. K-12 substr. DH10B] gi|188496096|ref|ZP_03003366.1| dihydroorotate dehydrogenase family protein [Escherichia coli 53638] gi|193062277|ref|ZP_03043372.1| dihydroorotate dehydrogenase family protein [Escherichia coli E22] gi|193071085|ref|ZP_03052011.1| dihydroorotate dehydrogenase family protein [Escherichia coli E110019] gi|194427185|ref|ZP_03059736.1| dihydroorotate dehydrogenase family protein [Escherichia coli B171] gi|194436016|ref|ZP_03068118.1| dihydroorotate dehydrogenase family protein [Escherichia coli 101-1] gi|195935523|ref|ZP_03080905.1| dihydropyrimidine dehydrogenase [Escherichia coli O157:H7 str. EC4024] gi|208807187|ref|ZP_03249524.1| dihydroorotate dehydrogenase family protein [Escherichia coli O157:H7 str. EC4206] gi|208814189|ref|ZP_03255518.1| dihydroorotate dehydrogenase family protein [Escherichia coli O157:H7 str. EC4045] gi|208819511|ref|ZP_03259831.1| dihydroorotate dehydrogenase family protein [Escherichia coli O157:H7 str. EC4042] gi|209396337|ref|YP_002271556.1| dihydroorotate dehydrogenase family protein [Escherichia coli O157:H7 str. EC4115] gi|217327385|ref|ZP_03443468.1| dihydroorotate dehydrogenase family protein [Escherichia coli O157:H7 str. TW14588] gi|238901329|ref|YP_002927125.1| putative oxidoreductase [Escherichia coli BW2952] gi|253772926|ref|YP_003035757.1| dihydropyrimidine dehydrogenase [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254162161|ref|YP_003045269.1| dihydropyrimidine dehydrogenase [Escherichia coli B str. REL606] gi|254794046|ref|YP_003078883.1| dihydropyrimidine dehydrogenase [Escherichia coli O157:H7 str. TW14359] gi|256022169|ref|ZP_05436034.1| dihydropyrimidine dehydrogenase [Escherichia sp. 4_1_40B] gi|260844753|ref|YP_003222531.1| putative oxidoreductase [Escherichia coli O103:H2 str. 12009] gi|261223394|ref|ZP_05937675.1| predicted oxidoreductase [Escherichia coli O157:H7 str. FRIK2000] gi|261259056|ref|ZP_05951589.1| putative oxidoreductase [Escherichia coli O157:H7 str. FRIK966] gi|291283401|ref|YP_003500219.1| putative oxidoreductase [Escherichia coli O55:H7 str. CB9615] gi|297517340|ref|ZP_06935726.1| dihydropyrimidine dehydrogenase [Escherichia coli OP50] gi|300930376|ref|ZP_07145785.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 187-1] gi|300950094|ref|ZP_07164041.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 116-1] gi|300955831|ref|ZP_07168172.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 175-1] gi|301644164|ref|ZP_07244172.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 146-1] gi|307138806|ref|ZP_07498162.1| dihydropyrimidine dehydrogenase [Escherichia coli H736] gi|312973604|ref|ZP_07787776.1| uncharacterized protein yeiA [Escherichia coli 1827-70] gi|331642772|ref|ZP_08343907.1| putative oxidoreductase [Escherichia coli H736] gi|331683824|ref|ZP_08384420.1| putative oxidoreductase [Escherichia coli H299] gi|3183568|sp|P25889|YEIA_ECOLI RecName: Full=Uncharacterized protein yeiA gi|85675261|dbj|BAE76624.1| predicted oxidoreductase [Escherichia coli str. K12 substr. W3110] gi|87082059|gb|AAC75208.2| Dihydropyrimidine dehydrogenase, NADH-dependent, subunit B [Escherichia coli str. K-12 substr. MG1655] gi|157067307|gb|ABV06562.1| dihydroorotate dehydrogenase family protein [Escherichia coli HS] gi|169889605|gb|ACB03312.1| predicted oxidoreductase [Escherichia coli str. K-12 substr. DH10B] gi|187771295|gb|EDU35139.1| dihydroorotate dehydrogenase family protein [Escherichia coli O157:H7 str. EC4196] gi|188015281|gb|EDU53403.1| dihydroorotate dehydrogenase family protein [Escherichia coli O157:H7 str. EC4113] gi|188491295|gb|EDU66398.1| dihydroorotate dehydrogenase family protein [Escherichia coli 53638] gi|189001874|gb|EDU70860.1| dihydroorotate dehydrogenase family protein [Escherichia coli O157:H7 str. EC4076] gi|189355322|gb|EDU73741.1| dihydroorotate dehydrogenase family protein [Escherichia coli O157:H7 str. EC4401] gi|189362895|gb|EDU81314.1| dihydroorotate dehydrogenase family protein [Escherichia coli O157:H7 str. EC4486] gi|189366084|gb|EDU84500.1| dihydroorotate dehydrogenase family protein [Escherichia coli O157:H7 str. EC4501] gi|189371361|gb|EDU89777.1| dihydroorotate dehydrogenase family protein [Escherichia coli O157:H7 str. EC869] gi|189376637|gb|EDU95053.1| dihydroorotate dehydrogenase family protein [Escherichia coli O157:H7 str. EC508] gi|192931943|gb|EDV84542.1| dihydroorotate dehydrogenase family protein [Escherichia coli E22] gi|192955608|gb|EDV86085.1| dihydroorotate dehydrogenase family protein [Escherichia coli E110019] gi|194414806|gb|EDX31077.1| dihydroorotate dehydrogenase family protein [Escherichia coli B171] gi|194424744|gb|EDX40729.1| dihydroorotate dehydrogenase family protein [Escherichia coli 101-1] gi|208726988|gb|EDZ76589.1| dihydroorotate dehydrogenase family protein [Escherichia coli O157:H7 str. EC4206] gi|208735466|gb|EDZ84153.1| dihydroorotate dehydrogenase family protein [Escherichia coli O157:H7 str. EC4045] gi|208739634|gb|EDZ87316.1| dihydroorotate dehydrogenase family protein [Escherichia coli O157:H7 str. EC4042] gi|209157737|gb|ACI35170.1| dihydroorotate dehydrogenase family protein [Escherichia coli O157:H7 str. EC4115] gi|217319752|gb|EEC28177.1| dihydroorotate dehydrogenase family protein [Escherichia coli O157:H7 str. TW14588] gi|238862745|gb|ACR64743.1| predicted oxidoreductase [Escherichia coli BW2952] gi|242377789|emb|CAQ32552.1| NADH-dependent dihydropyrimidine dehydrogenase subunit, subunit of NAD-dependent dihydropyrimidine dehydrogenase [Escherichia coli BL21(DE3)] gi|253323970|gb|ACT28572.1| dihydroorotate dehydrogenase family protein [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253974062|gb|ACT39733.1| dihydropyrimidine dehydrogenase [Escherichia coli B str. REL606] gi|253978230|gb|ACT43900.1| dihydropyrimidine dehydrogenase [Escherichia coli BL21(DE3)] gi|254593446|gb|ACT72807.1| predicted oxidoreductase [Escherichia coli O157:H7 str. TW14359] gi|257759900|dbj|BAI31397.1| predicted oxidoreductase [Escherichia coli O103:H2 str. 12009] gi|260448759|gb|ACX39181.1| dihydroorotate dehydrogenase family protein [Escherichia coli DH1] gi|290763274|gb|ADD57235.1| putative oxidoreductase [Escherichia coli O55:H7 str. CB9615] gi|300317298|gb|EFJ67082.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 175-1] gi|300450584|gb|EFK14204.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 116-1] gi|300461698|gb|EFK25191.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 187-1] gi|301077462|gb|EFK92268.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 146-1] gi|310332199|gb|EFP99434.1| uncharacterized protein yeiA [Escherichia coli 1827-70] gi|315136780|dbj|BAJ43939.1| putative oxidoreductase [Escherichia coli DH1] gi|320192230|gb|EFW66875.1| dihydropyrimidine dehydrogenase [Escherichia coli O157:H7 str. EC1212] gi|320641218|gb|EFX10696.1| dihydropyrimidine dehydrogenase subunit B [Escherichia coli O157:H7 str. G5101] gi|320646606|gb|EFX15517.1| dihydropyrimidine dehydrogenase subunit B [Escherichia coli O157:H- str. 493-89] gi|320651861|gb|EFX20236.1| dihydropyrimidine dehydrogenase subunit B [Escherichia coli O157:H- str. H 2687] gi|320657585|gb|EFX25383.1| dihydropyrimidine dehydrogenase subunit B [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320663191|gb|EFX30500.1| dihydropyrimidine dehydrogenase subunit B [Escherichia coli O55:H7 str. USDA 5905] gi|320667942|gb|EFX34845.1| dihydropyrimidine dehydrogenase subunit B [Escherichia coli O157:H7 str. LSU-61] gi|323161774|gb|EFZ47655.1| hypothetical protein ECE128010_2020 [Escherichia coli E128010] gi|323168713|gb|EFZ54393.1| hypothetical protein SS53G_1042 [Shigella sonnei 53G] gi|323936761|gb|EGB33046.1| dihydroorotate dehydrogenase [Escherichia coli E1520] gi|323940784|gb|EGB36972.1| dihydroorotate dehydrogenase [Escherichia coli E482] gi|323961611|gb|EGB57217.1| dihydroorotate dehydrogenase [Escherichia coli H489] gi|323972971|gb|EGB68168.1| dihydroorotate dehydrogenase [Escherichia coli TA007] gi|324118013|gb|EGC11912.1| dihydroorotate dehydrogenase [Escherichia coli E1167] gi|326339497|gb|EGD63308.1| dihydropyrimidine dehydrogenase [Escherichia coli O157:H7 str. 1125] gi|326343958|gb|EGD67719.1| dihydropyrimidine dehydrogenase [Escherichia coli O157:H7 str. 1044] gi|331039570|gb|EGI11790.1| putative oxidoreductase [Escherichia coli H736] gi|331078776|gb|EGI49978.1| putative oxidoreductase [Escherichia coli H299] gi|332343925|gb|AEE57259.1| conserved hypothetical protein [Escherichia coli UMNK88] Length = 411 Score = 47.0 bits (110), Expect = 7e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + ++C+ C C C G + + + +T + K Sbjct: 324 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 378 CVGCLLCGHVCPVGCIELG 396 >gi|328470297|gb|EGF41208.1| formate dehydrogenase, alpha subunit [Vibrio parahaemolyticus 10329] Length = 1387 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 29/84 (34%), Gaps = 19/84 (22%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM------------------ 100 RCI+C C C QA+ R +R D Sbjct: 601 DANRCISCGQCIQACREQAVHGVLSFVSDKNGRPALRPDDRPRFRSDEKGVGCSGLTLMG 660 Query: 101 -IKCIYCGLCQEACPVDAIVEGPN 123 KC+ CG C +ACP A+V+ + Sbjct: 661 DSKCVQCGACVQACPTGAMVDSRD 684 Score = 34.3 bits (77), Expect = 5.5, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 22/72 (30%), Gaps = 4/72 (5%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P ++ +G G+ +C+ C C CP A+ Sbjct: 638 PDDRPRFRSDEKGVGCSGLTLMGDSKCVQCGACVQACPTGAMVDSRDRSQGRTEHLKAVD 697 Query: 97 DIDMIKCIYCGL 108 I C YCG+ Sbjct: 698 TI----CTYCGV 705 >gi|323171798|gb|EFZ57442.1| hypothetical protein ECLT68_3438 [Escherichia coli LT-68] Length = 411 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + ++C+ C C C G + + + +T + K Sbjct: 324 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 378 CVGCLLCGHVCPVGCIELG 396 >gi|309702460|emb|CBJ01786.1| putative oxidoreductase, 4Fe-4S binding subunit [Escherichia coli ETEC H10407] Length = 411 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + ++C+ C C C G + + + +T + K Sbjct: 324 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 378 CVGCLLCGHVCPVGCIELG 396 >gi|310642616|ref|YP_003947374.1| pyruvate:ferredoxin oxidoreductase and like 2-oxoacid:ferredoxin oxidoreductase gamma subunit-like protein [Paenibacillus polymyxa SC2] gi|309247566|gb|ADO57133.1| Pyruvate:ferredoxin oxidoreductase and like 2-oxoacid:ferredoxin oxidoreductase gamma subunit-like protein [Paenibacillus polymyxa SC2] Length = 337 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 2/76 (2%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 ++C C C++ICP E G ID C C C + CP Sbjct: 250 EYEADKCTHCAKCDSICPDYCFVWE-EQADKRGRMMPFLQGIDYQYCKGCLKCVDICPSG 308 Query: 117 AIVEGPN-FEFATETR 131 A+ + +A + R Sbjct: 309 ALSSRREQWGWAEQNR 324 >gi|291544447|emb|CBL17556.1| electron transport complex, RnfABCDGE type, B subunit [Ruminococcus sp. 18P13] Length = 266 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 30/61 (49%), Gaps = 11/61 (18%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + + CI CK+CE C + AIT+ ID KC CG+C EACPV A Sbjct: 212 HCKNGCIGCKICEKKCISGAITVTD-----------FHASIDYAKCTGCGVCYEACPVGA 260 Query: 118 I 118 I Sbjct: 261 I 261 >gi|293415430|ref|ZP_06658073.1| yeiA protein [Escherichia coli B185] gi|291433078|gb|EFF06057.1| yeiA protein [Escherichia coli B185] Length = 411 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 25/79 (31%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + ++C+ C C C G + + + + + K Sbjct: 324 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKIRTPHCNTEK 377 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 378 CVGCLLCGHVCPVGCIELG 396 >gi|261369003|ref|ZP_05981886.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Subdoligranulum variabile DSM 15176] gi|282568874|gb|EFB74409.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Subdoligranulum variabile DSM 15176] Length = 247 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 12/72 (16%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ A P +RCI C C A CP AI + +CI Sbjct: 159 PYKPGMARAMVPRTSKRCIDCGRCAAACPTGAIDAADPRQTD------------PARCIG 206 Query: 106 CGLCQEACPVDA 117 C C CPV+A Sbjct: 207 CMRCVRLCPVEA 218 Score = 38.2 bits (87), Expect = 0.41, Method: Composition-based stats. Identities = 10/17 (58%), Positives = 11/17 (64%) Query: 102 KCIYCGLCQEACPVDAI 118 +CI CG C ACP AI Sbjct: 175 RCIDCGRCAAACPTGAI 191 >gi|209766284|gb|ACI81454.1| putative oxidoreductase [Escherichia coli] Length = 413 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + ++C+ C C C G + + + +T + K Sbjct: 326 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 379 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 380 CVGCLLCGHVCPVGCIELG 398 >gi|237731407|ref|ZP_04561888.1| electron transport complex protein RnfC [Citrobacter sp. 30_2] gi|226906946|gb|EEH92864.1| electron transport complex protein RnfC [Citrobacter sp. 30_2] Length = 564 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 35/107 (32%), Gaps = 9/107 (8%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ CI C C CPA + + G + ++ CI CG C CP I Sbjct: 373 EEKGCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHNIADCIECGACAWVCP-SNI 430 Query: 119 VEGPNFE------FATETRQELYYD-KERLLNNGDRWESEIVRNIVT 158 F +A ++ + K R R E E + Sbjct: 431 PLVQYFRQEKAEIYAISQEEKRAAEAKARFEARQARLEREKAARLER 477 >gi|254462393|ref|ZP_05075809.1| formate dehydrogenase, alpha subunit [Rhodobacterales bacterium HTCC2083] gi|206678982|gb|EDZ43469.1| formate dehydrogenase, alpha subunit [Rhodobacteraceae bacterium HTCC2083] Length = 925 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 6/77 (7%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACPVDAI 118 CI C LC C + + G +D + C+ CG C +ACP A+ Sbjct: 151 CIQCGLCVRACR-EVQVNDVIGMSGRGQNAYPTFDLADPMGDSTCVACGECVQACPTGAL 209 Query: 119 VEGPNF-EFATETRQEL 134 + E R + Sbjct: 210 MPSTVVDENQVGDRADF 226 >gi|146311475|ref|YP_001176549.1| electron transport complex protein RnfC [Enterobacter sp. 638] gi|145318351|gb|ABP60498.1| electron transport complex, RnfABCDGE type, C subunit [Enterobacter sp. 638] Length = 673 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 26/108 (24%), Positives = 40/108 (37%), Gaps = 9/108 (8%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ CI C C CPA + + G ++ CI CG C CP +I Sbjct: 373 EEKGCIRCSACADACPAD-LLPQQLYWFSKGQLHDKAKAHNLADCIECGACAWVCP-SSI 430 Query: 119 VEGPNFEFATETRQELY---YDKERLLNNGDRWESEIVRNIVTDSPYR 163 F + + E+Y + +R R+E+ R + D R Sbjct: 431 PLVQYFR---QEKAEIYAISLEDKRAAEAKARFEARQAR-LERDKIAR 474 >gi|1888325|gb|AAB49653.1| pyruvate:ferredoxin oxidoreductase [Entamoeba histolytica] Length = 1162 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 31/87 (35%), Gaps = 16/87 (18%) Query: 58 NGEERCIACKLCEAICPAQAITI------ESGPRCHDGTR---------RTVRYDIDMIK 102 +C+ C +C CP AI ES + + R + + Sbjct: 678 WEASKCVQCNMCSLYCPHAAIRCFYLTPEESAKAPAEFVQIDGKAQQAGYKFRIQVSAMD 737 Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATE 129 C C +C ACPV + P FE +E Sbjct: 738 CTGCEVCTTACPVKCLSMTP-FEQVSE 763 >gi|12516464|gb|AAG57285.1|AE005446_13 putative oxidoreductase [Escherichia coli O157:H7 str. EDL933] gi|13362508|dbj|BAB36462.1| putative oxidoreductase [Escherichia coli O157:H7 str. Sakai] gi|73856146|gb|AAZ88853.1| putative oxidoreductase [Shigella sonnei Ss046] gi|209766278|gb|ACI81451.1| putative oxidoreductase [Escherichia coli] gi|209766280|gb|ACI81452.1| putative oxidoreductase [Escherichia coli] gi|209766282|gb|ACI81453.1| putative oxidoreductase [Escherichia coli] gi|209766286|gb|ACI81455.1| putative oxidoreductase [Escherichia coli] Length = 413 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + ++C+ C C C G + + + +T + K Sbjct: 326 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 379 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 380 CVGCLLCGHVCPVGCIELG 398 >gi|238787192|ref|ZP_04630992.1| Pyruvate-flavodoxin oxidoreductase [Yersinia frederiksenii ATCC 33641] gi|238724980|gb|EEQ16620.1| Pyruvate-flavodoxin oxidoreductase [Yersinia frederiksenii ATCC 33641] Length = 1177 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 24/150 (16%), Positives = 36/150 (24%), Gaps = 34/150 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A + C C C A C Sbjct: 646 MLAGLGDAL------PVSAFPPDGTWPVGTTQWEKRNIAEDIPIWQPDLCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHD----------------GTRRTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPAAMAGAPDSLQSLDVKARDMRGQKYVLQVAPEDCTGCNLCYEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETRQ--ELYYD 137 AI P E E + + + + Sbjct: 760 RQNPEIRAINMKPRLEHLVEEKAHYDFFLN 789 >gi|332296470|ref|YP_004438393.1| Cobyrinic acid ac-diamide synthase [Thermodesulfobium narugense DSM 14796] gi|332179573|gb|AEE15262.1| Cobyrinic acid ac-diamide synthase [Thermodesulfobium narugense DSM 14796] Length = 291 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 10/81 (12%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 S ++ +E+CI C C+ +C AI +S + + ++ Sbjct: 51 PISIEKHEFYSGHIAKINQEKCIGCSTCKNLCRFDAIKEDSNGK----------FSVEPT 100 Query: 102 KCIYCGLCQEACPVDAIVEGP 122 C C +C E CP AI Sbjct: 101 SCEGCKVCVEFCPEKAIDFPD 121 >gi|330446484|ref|ZP_08310136.1| electron transport complex, RnfABCDGE type, B subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490675|dbj|GAA04633.1| electron transport complex, RnfABCDGE type, B subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 194 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 27/78 (34%), Gaps = 10/78 (12%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E+ CI C C CP AI + + + +C C LC CP D Sbjct: 108 FIHEDMCIGCTKCIQACPVDAIVGGTK----------SMHTVIKDECTGCDLCVSPCPTD 157 Query: 117 AIVEGPNFEFATETRQEL 134 I P E + +L Sbjct: 158 CIEMIPVEETPDNWKWQL 175 >gi|326575679|gb|EGE25602.1| RnfABCDGE type electron transport complex subunit B [Moraxella catarrhalis CO72] Length = 275 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 28/100 (28%), Gaps = 12/100 (12%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 + T P + R + R E CI C C CP AI + Sbjct: 80 TIANILNKPTKPATPSQWQIDPQTNRPKEV--RAIIQEADCIGCTKCIPACPVDAIVGTA 137 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 I C C LC CPVD I P Sbjct: 138 KHMHS----------IITDLCTGCELCLAPCPVDCIDVIP 167 >gi|317487131|ref|ZP_07945934.1| indolepyruvate ferredoxin oxidoreductase [Bilophila wadsworthia 3_1_6] gi|316921615|gb|EFV42898.1| indolepyruvate ferredoxin oxidoreductase [Bilophila wadsworthia 3_1_6] Length = 590 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 6/61 (9%) Query: 59 GEERCIACKLCEAICPAQAITIE-SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 ++CIAC C + ++ S + +R R I+ + C+ CG+C + CPV A Sbjct: 529 DADKCIACGKC---IQSGCPSVVLSDEKHPRTGKRKAR--IEPVTCVGCGICAQICPVHA 583 Query: 118 I 118 I Sbjct: 584 I 584 >gi|302391326|ref|YP_003827146.1| electron transport complex, RnfABCDGE type, B subunit [Acetohalobium arabaticum DSM 5501] gi|302203403|gb|ADL12081.1| electron transport complex, RnfABCDGE type, B subunit [Acetohalobium arabaticum DSM 5501] Length = 423 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 33/95 (34%), Gaps = 15/95 (15%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNG-----EERCIACKLCEAICPAQAITIESGP 84 TI P K S E E C+ C +C CP AI+ E G Sbjct: 258 PMDTIEAPKAKDQVSAVDETEETDTGDDRECSIYITEECVGCGVCVEECPVDAISSEDGE 317 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 ++ID CI C C E CP DAI Sbjct: 318 ----------IHNIDPEVCIECENCVEVCPTDAIQ 342 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 10/64 (15%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 E C+ C +C CP AI+ E G ++ID CI C C E CP Sbjct: 367 CSIYITEECVGCGVCVEECPVDAISGEDGE----------IHNIDPEVCIECENCVEVCP 416 Query: 115 VDAI 118 +AI Sbjct: 417 TEAI 420 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 9/72 (12%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR---------TVRYDIDMIKCIYC 106 + E CI C+ C +CP AI + G +C+ C Sbjct: 319 HNIDPEVCIECENCVEVCPTDAIQSKEGETEEAEKTNSNDAAEEDDHECSIYITEECVGC 378 Query: 107 GLCQEACPVDAI 118 G+C E CPVDAI Sbjct: 379 GVCVEECPVDAI 390 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 25/60 (41%), Positives = 30/60 (50%), Gaps = 11/60 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI C +CE CP AITIE ID +CI CG+C EACP+D I Sbjct: 214 CKTGCIGCGVCETKCPVDAITIEDNLAV-----------IDYEECINCGVCAEACPMDTI 262 Score = 41.6 bits (96), Expect = 0.035, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 5/68 (7%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCIYCGLCQEACPV 115 + C C C CP T+ + + CI CG+C+ CPV Sbjct: 171 DECTGCGNCVEECPKGLFTLVEEGQEVFIHCSSHSGGKDVKEACKTGCIGCGVCETKCPV 230 Query: 116 DAIVEGPN 123 DAI N Sbjct: 231 DAITIEDN 238 Score = 37.4 bits (85), Expect = 0.68, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 10/59 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 + C+ CEA+C AI + + +C CG C E CP Sbjct: 137 KSCVYGCLGFGDCEAVCSFDAIKMNENGLPE----------VIADECTGCGNCVEECPK 185 >gi|300704663|ref|YP_003746266.1| 4fe-4S ferredoxin, iron-sulfur binding [Ralstonia solanacearum CFBP2957] gi|299072327|emb|CBJ43661.1| 4Fe-4S ferredoxin, iron-sulphur binding [Ralstonia solanacearum CFBP2957] Length = 268 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 22/64 (34%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C LC CP AI + + C C LC CPVD I Sbjct: 86 DPEHCIGCTLCIQACPVDAIVGAPK----------AMHVVLADWCTGCDLCVAPCPVDCI 135 Query: 119 VEGP 122 P Sbjct: 136 DMVP 139 Score = 38.9 bits (89), Expect = 0.25, Method: Composition-based stats. Identities = 14/21 (66%), Positives = 15/21 (71%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C LC +ACPVDAI Sbjct: 85 IDPEHCIGCTLCIQACPVDAI 105 >gi|294102298|ref|YP_003554156.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Aminobacterium colombiense DSM 12261] gi|293617278|gb|ADE57432.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Aminobacterium colombiense DSM 12261] Length = 108 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 9/70 (12%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 E+ CI+C LC CP ++IT + + +D C CG+C + CP A Sbjct: 48 WNEDECISCMLCWVQCPDRSITTDENGKVTG---------VDYFYCKGCGICAQVCPKKA 98 Query: 118 IVEGPNFEFA 127 I P EFA Sbjct: 99 IEMRPEAEFA 108 >gi|260550717|ref|ZP_05824925.1| electron transport complex [Acinetobacter sp. RUH2624] gi|260406223|gb|EEW99707.1| electron transport complex [Acinetobacter sp. RUH2624] Length = 263 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 28/87 (32%), Gaps = 10/87 (11%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P E + G + E+ CI C C CP AI + + Sbjct: 66 PAETSVWPVQADGRPQRMKAIIREDECIGCTKCINACPVDAIIGSGK----------LMH 115 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPN 123 I C C LC CPVD I + Sbjct: 116 TILTDLCTGCELCIPPCPVDCIDLVED 142 >gi|291287814|ref|YP_003504630.1| electron transport complex, RnfABCDGE type, B subunit [Denitrovibrio acetiphilus DSM 12809] gi|290884974|gb|ADD68674.1| electron transport complex, RnfABCDGE type, B subunit [Denitrovibrio acetiphilus DSM 12809] Length = 267 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 32/89 (35%), Gaps = 11/89 (12%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 K P +K + + CI C++CE CP AI ++S Sbjct: 180 RKLIKLIPEDKPFVVACMSKDKGPDVKKACKVGCIGCRMCEKKCPVGAIDVDSFLAV--- 236 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ID CI CG C+ CP AI Sbjct: 237 --------IDPAPCIACGECERVCPTGAI 257 Score = 37.4 bits (85), Expect = 0.64, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 19/65 (29%), Gaps = 10/65 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C C A+ + S I KC CG C ACP I Sbjct: 134 CTYACVGEGSCVKSCAFDAMYMGSDGIPV----------IIPDKCTSCGKCVAACPRKLI 183 Query: 119 VEGPN 123 P Sbjct: 184 KLIPE 188 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 5/64 (7%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEACP 114 ++C +C C A CP + I + + + + CI C +C++ CP Sbjct: 165 PDKCTSCGKCVAACPRKLIKLIPEDKPFVVACMSKDKGPDVKKACKVGCIGCRMCEKKCP 224 Query: 115 VDAI 118 V AI Sbjct: 225 VGAI 228 >gi|212711766|ref|ZP_03319894.1| hypothetical protein PROVALCAL_02841 [Providencia alcalifaciens DSM 30120] gi|212685288|gb|EEB44816.1| hypothetical protein PROVALCAL_02841 [Providencia alcalifaciens DSM 30120] Length = 200 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 22/64 (34%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 EE CI C C CP AI + + + C C LC CP D I Sbjct: 113 DEENCIGCTKCIQACPVDAIVGAT----------RAMHTVIEDLCTGCDLCVAPCPTDCI 162 Query: 119 VEGP 122 P Sbjct: 163 EMVP 166 Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C C +ACPVDAI Sbjct: 112 IDEENCIGCTKCIQACPVDAI 132 >gi|193216242|ref|YP_001997441.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Chloroherpeton thalassium ATCC 35110] gi|193089719|gb|ACF14994.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chloroherpeton thalassium ATCC 35110] Length = 98 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 32/95 (33%), Positives = 37/95 (38%), Gaps = 13/95 (13%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYC------GLCQ 110 E CI C C CP AI P G D I KC C C Sbjct: 7 EECINCSACIPECPNTAIYEPGDPWELFGESYESLNDEITYIVPDKCTECVGHHEEPQCV 66 Query: 111 EACPVDAIVEGPNFEFATETRQELYYDKERLLNNG 145 CP D IV PNF E++++L KE L +NG Sbjct: 67 PVCPSDCIVPDPNFN---ESKEDLLAKKEALESNG 98 >gi|113868895|ref|YP_727384.1| ferredoxin [Ralstonia eutropha H16] gi|113527671|emb|CAJ94016.1| Ferredoxin [Ralstonia eutropha H16] Length = 721 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 9/64 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +C C C CP+QA+ R C+ CGLC++ CP DAI Sbjct: 586 DTGKCTMCMACVGACPSQALRDNPERPVLSFIERN---------CVQCGLCEKTCPEDAI 636 Query: 119 VEGP 122 P Sbjct: 637 SLVP 640 Score = 41.2 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 7/64 (10%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 +G + C C IC +AI R ++ C+ CG C CP A Sbjct: 335 HGRNQTTGCTACIDICSTEAI-------GSRWHDGKGRIEVTPNLCMGCGACTTVCPSGA 387 Query: 118 IVEG 121 I G Sbjct: 388 ISYG 391 Score = 38.2 bits (87), Expect = 0.44, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 15/30 (50%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 ID+ C C C +ACP DAI + + Sbjct: 215 IDLDLCTRCNACIDACPEDAIDFSYQIDLS 244 >gi|39996191|ref|NP_952142.1| iron-sulfur cluster-binding protein [Geobacter sulfurreducens PCA] gi|39982956|gb|AAR34415.1| iron-sulfur cluster-binding protein [Geobacter sulfurreducens PCA] gi|298505204|gb|ADI83927.1| iron-sulfur cluster-binding oxidoreductase [Geobacter sulfurreducens KN400] Length = 368 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 23/78 (29%), Gaps = 17/78 (21%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C C LC C AI I G ID C C C CP AI Sbjct: 193 KYCTGCGLCLKACAHDAIAIIEGKA-----------KIDPKACAGCSRCITVCPTKAITI 241 Query: 121 GPNFEFATETRQELYYDK 138 N +L K Sbjct: 242 QWNEA------ADLVMKK 253 >gi|45358387|ref|NP_987944.1| coenzyme F420-non-reducing hydrogenase subunit beta [Methanococcus maripaludis S2] gi|44921145|emb|CAF30380.1| coenzyme F420-non-reducing hydrogenase subunit beta [Methanococcus maripaludis S2] Length = 397 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 31/72 (43%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 EE+C C C CP AIT+ + +R+ + CI CG C ++CP DA Sbjct: 265 WDEEKCAYCGPCAIKCPNNAITVVNPKGLEMPSRKKTEKANEFKMCIRCGACVQSCPNDA 324 Query: 118 IVEGPNFEFATE 129 + G E Sbjct: 325 LRIGKIIHNGKE 336 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ CI C +C CP AI +G + + V++ +D CI CG C + CP D I Sbjct: 160 DKDSCIYCSICAQTCPWNAIF-VAGKKSPKRDKNIVKFSVDSDLCIGCGDCTDKCPRDLI 218 Query: 119 VE 120 V Sbjct: 219 VL 220 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 3/64 (4%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 N + CI C C CP A+ I + + R + C CG C E CP D Sbjct: 305 NEFKMCIRCGACVQSCPNDALRI---GKIIHNGKEYERIEFSPNLCDSCGKCIETCPYDM 361 Query: 118 IVEG 121 + Sbjct: 362 LKLT 365 Score = 38.2 bits (87), Expect = 0.40, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 3/57 (5%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 N + C C C +CP A+ + ++ + KC CG C + CP Sbjct: 27 NPFKVCQLCGNCVNVCPNDALNLREIELNGKTIKQIAYF---PTKCDLCGECVKVCP 80 Score = 37.0 bits (84), Expect = 0.84, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 26/76 (34%), Gaps = 3/76 (3%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI-DMIKCIYCGLCQEACPVDAIVE 120 C+ C C CP + +E + I C+ CG+C CPV A+ Sbjct: 93 FCVGCMKCVDACPDSYVGMEGVVEPAKRNITLPKEPIAVTEDCVGCGVCISECPVGALSI 152 Query: 121 GPNFEFATETRQELYY 136 E A + Y Sbjct: 153 --EGEKAVVDKDSCIY 166 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 11/59 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 E C+ C +C + CP A++IE +D CIYC +C + CP +AI Sbjct: 133 EDCVGCGVCISECPVGALSIEGEKAV-----------VDKDSCIYCSICAQTCPWNAIF 180 >gi|194431438|ref|ZP_03063730.1| dihydroorotate dehydrogenase family protein [Shigella dysenteriae 1012] gi|194420263|gb|EDX36340.1| dihydroorotate dehydrogenase family protein [Shigella dysenteriae 1012] gi|332092632|gb|EGI97703.1| hypothetical protein SD15574_2140 [Shigella dysenteriae 155-74] Length = 411 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + ++C+ C C C G + + + +T + K Sbjct: 324 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 378 CVGCLLCGHVCPVGCIELG 396 >gi|308049947|ref|YP_003913513.1| electron transport complex, RnfABCDGE type, B subunit [Ferrimonas balearica DSM 9799] gi|307632137|gb|ADN76439.1| electron transport complex, RnfABCDGE type, B subunit [Ferrimonas balearica DSM 9799] Length = 184 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 25/73 (34%), Gaps = 10/73 (13%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 CI C C CP AI + + +C C LC E CPVD I Sbjct: 113 ECIGCTKCIQACPVDAIIGTGKQ----------MHTVLADQCTGCDLCVEPCPVDCIEMR 162 Query: 122 PNFEFATETRQEL 134 P + +L Sbjct: 163 PIATTTQNWKWDL 175 Score = 37.8 bits (86), Expect = 0.57, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 22/47 (46%) Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 A + +E P D R I +CI C C +ACPVDAI+ Sbjct: 86 ADMLGVEPEPLDADADSRPKVAYIREAECIGCTKCIQACPVDAIIGT 132 >gi|119719093|ref|YP_919588.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Thermofilum pendens Hrk 5] gi|119524213|gb|ABL77585.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermofilum pendens Hrk 5] Length = 455 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 31/96 (32%), Gaps = 7/96 (7%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C C C CP +A+ + + V +CI C C E CP DA+ Sbjct: 322 DSCTLCGACAKNCPEKALNAVA-------SSGRVELRFYPWRCIGCRECVEVCPEDAVEI 374 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNI 156 A +R E + + EI Sbjct: 375 DRAANPALMSRHEHIVLSSSEMARCSKCGREIAPEK 410 >gi|194332884|ref|YP_002014744.1| putative glutamate synthase (NADPH) small subunit [Prosthecochloris aestuarii DSM 271] gi|194310702|gb|ACF45097.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Prosthecochloris aestuarii DSM 271] Length = 578 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 6/59 (10%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C CK C + CP +AI+ +G + Y KC+ C LC CP I G Sbjct: 521 CFDCKQCVSFCPQEAISRFRD--NPEGEKVYTNY----AKCVGCHLCSLVCPSGYIQMG 573 >gi|299149360|ref|ZP_07042417.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides sp. 3_1_23] gi|298512547|gb|EFI36439.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides sp. 3_1_23] Length = 1182 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 28/81 (34%), Gaps = 15/81 (18%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG A N E CI C C +CP A + T Sbjct: 676 RGVAAFVPEWN-PENCIQCNKCAYVCPHASIRPFVLDAEEQKGAKFEQLKAVGKVFDGMT 734 Query: 94 VRYDIDMIKCIYCGLCQEACP 114 R +D++ C+ CG C + CP Sbjct: 735 FRIQVDVLDCLGCGNCADICP 755 >gi|322419375|ref|YP_004198598.1| hydrogenase, Fe-only [Geobacter sp. M18] gi|320125762|gb|ADW13322.1| hydrogenase, Fe-only [Geobacter sp. M18] Length = 586 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 3/67 (4%) Query: 59 GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115 ++C+ C+ CE +C Q + SG +++++ C CG C CPV Sbjct: 149 DMDKCVMCRRCETMCNDVQTCNVLSGVNRGFNAVVAPAFEMNLADSGCTNCGQCVAVCPV 208 Query: 116 DAIVEGP 122 A+ E Sbjct: 209 GALAEKD 215 >gi|183230217|ref|XP_657019.2| pyruvate:ferredoxin oxidoreductase [Entamoeba histolytica HM-1:IMSS] gi|169803031|gb|EAL51636.2| pyruvate:ferredoxin oxidoreductase [Entamoeba histolytica HM-1:IMSS] Length = 1162 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 31/87 (35%), Gaps = 16/87 (18%) Query: 58 NGEERCIACKLCEAICPAQAITI------ESGPRCHDGTR---------RTVRYDIDMIK 102 +C+ C +C CP AI ES + + R + + Sbjct: 678 WEASKCVQCNMCSLYCPHAAIRCFYLTPEESAKAPAEFVQIDGKAQQAGYKFRIQVSAMD 737 Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATE 129 C C +C ACPV + P FE +E Sbjct: 738 CTGCEVCTTACPVKCLSMTP-FEQVSE 763 >gi|167945833|ref|ZP_02532907.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 218 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 37/112 (33%), Gaps = 25/112 (22%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAI---------------TIESGPRCHDGTRRTV 94 L+ + C C C +CP AI + S P G + + Sbjct: 103 NIGLQWPKLEIDLCTHCGKCPLVCPHAAIRSKVFREADLADAPASFRSAPVNGGGFEKGL 162 Query: 95 R--YDIDMIKCIYCGLCQEACPVD--------AIVEGPNFEFATETRQELYY 136 R Y + C CGLC E CP+ A+ + ++ + R + Sbjct: 163 RITYQVAPDDCTGCGLCVEICPIRDRQNPKRKALNMVDDPDYQEQERANWAF 214 >gi|163749656|ref|ZP_02156903.1| hypothetical NADPH-dependent glutamate synthase [Shewanella benthica KT99] gi|161330766|gb|EDQ01703.1| hypothetical NADPH-dependent glutamate synthase [Shewanella benthica KT99] Length = 543 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 24/85 (28%), Gaps = 3/85 (3%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P E+ G + +RC +C C A + Sbjct: 456 DPVERRKNFDEVLGGLTEQEALYEAQRCYSCGNCFECNGCLAACPHGAI---TYLGKGKG 512 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVE 120 Y +D KC C C CP AI Sbjct: 513 YKVDYDKCTGCNACYSQCPCHAIEM 537 >gi|258405327|ref|YP_003198069.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfohalobium retbaense DSM 5692] gi|257797554|gb|ACV68491.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfohalobium retbaense DSM 5692] Length = 345 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 37/118 (31%), Gaps = 29/118 (24%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 +G F ++ T E +H L E+ C AC C C Sbjct: 155 LGGFGGAIKNLGMGGVTKKTKLE----------QHRLIDLVIDEDACQACGACVDACWFD 204 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134 IE+ ID +C+ C +C CP AI E R++L Sbjct: 205 LPRIEND-----------CVVIDSPECMRCPICSTTCPEGAIRL--------ENREKL 243 >gi|261367693|ref|ZP_05980576.1| RnfB/polyferredoxin [Subdoligranulum variabile DSM 15176] gi|282570487|gb|EFB76022.1| RnfB/polyferredoxin [Subdoligranulum variabile DSM 15176] Length = 278 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 28/91 (30%), Gaps = 11/91 (12%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 K P + + CIAC LC CP QAI + Sbjct: 181 RKVIQMKPIAPQPAVKCSNKDKGAVVNKTCKVGCIACGLCVRNCPQQAIFL--------- 231 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + ID KC CG C CP AI Sbjct: 232 --KDNVAVIDYTKCNGCGTCVSKCPKKAIQW 260 Score = 41.2 bits (95), Expect = 0.043, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 5/78 (6%) Query: 59 GEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 +C C C A+CP + I + + +C + + V + CI CGLC C Sbjct: 165 DRSKCTGCTACTAVCPRKVIQMKPIAPQPAVKCSNKDKGAVVNKTCKVGCIACGLCVRNC 224 Query: 114 PVDAIVEGPNFEFATETR 131 P AI N T+ Sbjct: 225 PQQAIFLKDNVAVIDYTK 242 >gi|255693780|ref|ZP_05417455.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides finegoldii DSM 17565] gi|260620403|gb|EEX43274.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides finegoldii DSM 17565] Length = 1182 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 28/81 (34%), Gaps = 15/81 (18%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG A N E CI C C +CP A + T Sbjct: 676 RGVAAFVPEWN-PENCIQCNKCAYVCPHASIRPFVLDAEEQKGAKFEQLKAVGKVFDGMT 734 Query: 94 VRYDIDMIKCIYCGLCQEACP 114 R +D++ C+ CG C + CP Sbjct: 735 FRIQVDVLDCLGCGNCADICP 755 >gi|255281009|ref|ZP_05345564.1| heterodisulfide reductase, A subunit [Bryantella formatexigens DSM 14469] gi|255268457|gb|EET61662.1| heterodisulfide reductase, A subunit [Bryantella formatexigens DSM 14469] Length = 662 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 1/66 (1%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-DIDMIKCIYCGLCQEACPV 115 + C C C +CP AIT E G R T R ++ C CG C ACP Sbjct: 581 QSDILLCNGCSSCANVCPYGAITYEDREVNDHGIRETRRIAVVNSALCQGCGACTVACPS 640 Query: 116 DAIVEG 121 A+ Sbjct: 641 GAMDLQ 646 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 40/115 (34%), Gaps = 18/115 (15%) Query: 59 GEERCIACKLCEAICPAQAITIE--------SGPRCHDGTRRTVRYDIDMIKCIY----- 105 ++C C +C+ CP++ E S ID CI Sbjct: 239 DMDKCTGCGVCQEKCPSRKTPSEFNRGLNTRSAIYTPFAQAIPNVPVIDREHCIKFKTGK 298 Query: 106 CGLCQEACPVDAIVEGPNFEFATETRQELY----YDKERLLNNGDRWESEIVRNI 156 CG+C + C AI E TE + +D +L +N D + +++ Sbjct: 299 CGVCAKVCQAGAIDYDQKDEIITEKYGAIVVATGFDTIKL-DNYDEYAYSQSKDV 352 >gi|237808208|ref|YP_002892648.1| electron transport complex, RnfABCDGE type, C subunit [Tolumonas auensis DSM 9187] gi|237500469|gb|ACQ93062.1| electron transport complex, RnfABCDGE type, C subunit [Tolumonas auensis DSM 9187] Length = 704 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 2/68 (2%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + E CI C C +CP + + + G ++ CI CG C CP Sbjct: 373 RDDEMNCIRCSKCAEVCPVKLLPQQLYWYSKAGDHENAE-KYNLSDCIECGACAWVCP-S 430 Query: 117 AIVEGPNF 124 I + Sbjct: 431 NIPLVHYY 438 >gi|81301366|ref|YP_401574.1| bidirectional hydrogenase complex protein HoxU [Synechococcus elongatus PCC 7942] gi|7433130|pir||S74231 bidirectional hydrogenase chain U - Synechococcus sp. (PCC 6301) gi|1708770|emb|CAA66381.1| hoxU [Synechococcus elongatus PCC 6301] gi|81170247|gb|ABB58587.1| NAD-reducing hydrogenase HoxS gamma subunit [Synechococcus elongatus PCC 7942] Length = 238 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 23/74 (31%), Gaps = 4/74 (5%) Query: 54 RRYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLC 109 R + RCI C C +C A + R + C CG C Sbjct: 139 RFFGLDHNRCILCTRCVRVCDEIEGAHVWDVAMRGEHCRIVAGMDQPWGAVDACTNCGKC 198 Query: 110 QEACPVDAIVEGPN 123 +ACP A+ Sbjct: 199 IDACPTGALFHKGE 212 Score = 35.5 bits (80), Expect = 2.4, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 8/82 (9%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIAC---KLCEAICPAQAITIESGPRCHDGTRR---- 92 + R+R + + G C C CE A A+ ++ + +R Sbjct: 77 RSPRLERYRRQIVELFFAEGNHVCAICVANGNCELQDAAIAVGMDHSRYPYRFPKRDVDL 136 Query: 93 -TVRYDIDMIKCIYCGLCQEAC 113 + +D +CI C C C Sbjct: 137 SHRFFGLDHNRCILCTRCVRVC 158 >gi|332093238|gb|EGI98298.1| hypothetical protein SB521682_0944 [Shigella boydii 5216-82] Length = 411 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + ++C+ C C C G + + + +T + K Sbjct: 324 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 378 CVGCLLCGHVCPVGCIELG 396 >gi|302342952|ref|YP_003807481.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075] gi|301639565|gb|ADK84887.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075] Length = 596 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 35/96 (36%), Gaps = 15/96 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 LRY F+ + + +K R L + E C C C CP AI+ E Sbjct: 515 TLRY-FRDEYVAHIVDKKCPA----RTCVNLIEFRVDEALCKKCGQCFKACPVGAISWEK 569 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ID+ KCI C C E C DAI Sbjct: 570 KQPAK----------IDLTKCIKCKTCIENCKFDAI 595 Score = 37.0 bits (84), Expect = 1.0, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 16/50 (32%) Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 I + + +D C CG C +ACPV AI Sbjct: 518 YFRDEYVAHIVDKKCPARTCVNLIEFRVDEALCKKCGQCFKACPVGAISW 567 >gi|297618250|ref|YP_003703409.1| NADH dehydrogenase (quinone) [Syntrophothermus lipocalidus DSM 12680] gi|297146087|gb|ADI02844.1| NADH dehydrogenase (quinone) [Syntrophothermus lipocalidus DSM 12680] Length = 605 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 15/96 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 LRY F+ + + ++ ++ + C C LC+ CPA AI+ E Sbjct: 522 TLRY-FRDEYVAHIVEKRCPAGVC----RSMTEFYIDASLCTGCGLCKKNCPADAISGEI 576 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + ID +CI CG C C A+ Sbjct: 577 KE----------VHVIDQDRCIKCGECINNCKFQAV 602 >gi|291523456|emb|CBK81749.1| Iron only hydrogenase large subunit, C-terminal domain [Coprococcus catus GD/7] Length = 487 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 24/70 (34%), Gaps = 6/70 (8%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGL 108 ++C C C CP AI P + D I+ KCI CG Sbjct: 125 HAVIDHKKCKECGKCAEACPYNAIADLMRPCKRSCPVDAITMDEDNIVVINEEKCINCGQ 184 Query: 109 CQEACPVDAI 118 C CP A+ Sbjct: 185 CVINCPFGAL 194 Score = 40.5 bits (93), Expect = 0.076, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 23/67 (34%), Gaps = 13/67 (19%) Query: 54 RRYPNGEERCIACK--LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 N C C C C AI E G ID KC CG C E Sbjct: 93 INRFNVTNNCQMCMAKKCLGACNFGAIKFEGG-----------HAVIDHKKCKECGKCAE 141 Query: 112 ACPVDAI 118 ACP +AI Sbjct: 142 ACPYNAI 148 >gi|282936076|gb|ADB04295.1| putative naphthyl-2-methyl-succinate synthase activating enzyme [bacterium enrichment culture clone N47] Length = 338 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 10/100 (10%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT--RRTVRYDIDMI 101 + L + + +C+ C C A CP +AI R ID Sbjct: 48 PECINFQEELFHHAD---KCVRCGTCVAACPEKAIAPPGKRTEKCTEDLRDVKPPIIDRS 104 Query: 102 KCIYCGLCQEACPVDAIV-----EGPNFEFATETRQELYY 136 KC C C + CP +AI + F+ +++Y Sbjct: 105 KCTLCMKCVDVCPQNAITRVSSVMTLDEAFSEIKSDDVFY 144 >gi|227873882|ref|ZP_03992104.1| 4Fe-4S ferredoxin, iron-sulfur binding [Oribacterium sinus F0268] gi|227840308|gb|EEJ50716.1| 4Fe-4S ferredoxin, iron-sulfur binding [Oribacterium sinus F0268] Length = 276 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 17/118 (14%) Query: 7 NVSFLFLKEFVGA------FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 N+ + F+ + L + FK + + +L R E Sbjct: 170 NLERIMFWAFLFGNLAYYLVGIALAFLFKDNRAFCKYICPVTVFLKPMSYFSLVRIRCDE 229 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +CI+C C+ +CP ++ + +G CI C C + CP A+ Sbjct: 230 TKCISCGKCKKVCPMDVEMTDNSRKRKNG-----------TDCILCMECVKVCPKGAL 276 >gi|225570605|ref|ZP_03779630.1| hypothetical protein CLOHYLEM_06707 [Clostridium hylemonae DSM 15053] gi|225160618|gb|EEG73237.1| hypothetical protein CLOHYLEM_06707 [Clostridium hylemonae DSM 15053] Length = 628 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 26/69 (37%), Positives = 31/69 (44%), Gaps = 10/69 (14%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 ALRR+ ERC C C CPA AI+ + Y ID +CI CG C+ Sbjct: 568 ALRRFVISPERCRGCSKCARNCPAGAISG----------KIKEPYVIDDTRCIKCGACES 617 Query: 112 ACPVDAIVE 120 AC AI Sbjct: 618 ACAFGAIHI 626 Score = 35.1 bits (79), Expect = 3.5, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 12/40 (30%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + R+ I +C C C CP AI Sbjct: 555 HVVEKKCVSHTCTALRRFVISPERCRGCSKCARNCPAGAI 594 >gi|167755391|ref|ZP_02427518.1| hypothetical protein CLORAM_00905 [Clostridium ramosum DSM 1402] gi|167704330|gb|EDS18909.1| hypothetical protein CLORAM_00905 [Clostridium ramosum DSM 1402] Length = 371 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 5/96 (5%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 +E+CI C C CP E G + G + V +D C C C E CP A+V Sbjct: 255 QEKCIQCAQCYITCPDMVFQFEPG--IYKGRKMMVNKGLDYHHCKGCLRCVEICPTQALV 312 Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRN 155 G E + + +K+ ++ + D +E + Sbjct: 313 SGVEREHS--NLKWFIRNKDLIVEHMD-YEDVGANS 345 >gi|167623859|ref|YP_001674153.1| electron transport complex protein RnfC [Shewanella halifaxensis HAW-EB4] gi|167353881|gb|ABZ76494.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella halifaxensis HAW-EB4] Length = 810 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 38/109 (34%), Gaps = 17/109 (15%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLC 109 E+ CI C C CPA P+ + YD ++ CI CG C Sbjct: 371 IADDTVEKPCIRCGECAVACPA-----LLLPQQLFWHAKAEEYDKAASFNLHDCIECGCC 425 Query: 110 QEACPVDAIVEGPNFEFA-------TETRQELYYDKERLLNNGDRWESE 151 CP I + A TE +++ + K+R R E E Sbjct: 426 SFVCP-SDIPLVEYYRIAKSAIRTQTEEKKQADFAKQRFEARLQRLEEE 473 >gi|241662549|ref|YP_002980909.1| ferredoxin [Ralstonia pickettii 12D] gi|240864576|gb|ACS62237.1| electron transport complex, RnfABCDGE type, B subunit [Ralstonia pickettii 12D] Length = 276 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 23/64 (35%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ERCI C LC CP AI + + C C LC CPVD I Sbjct: 90 DPERCIGCTLCIQACPVDAIVGAPK----------AMHTVLEDWCTGCDLCVPPCPVDCI 139 Query: 119 VEGP 122 P Sbjct: 140 DMIP 143 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 14/21 (66%), Positives = 16/21 (76%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID +CI C LC +ACPVDAI Sbjct: 89 IDPERCIGCTLCIQACPVDAI 109 >gi|124485398|ref|YP_001030014.1| hypothetical protein Mlab_0573 [Methanocorpusculum labreanum Z] gi|124362939|gb|ABN06747.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Methanocorpusculum labreanum Z] Length = 198 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 35/135 (25%), Positives = 49/135 (36%), Gaps = 21/135 (15%) Query: 10 FLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69 F +L+EF + L+ FF T+ P + FR L + C C C Sbjct: 4 FTYLREFCRLSW--LKAFF----TVKTP--PLTKPSYFRDFPELT-----GKECTHCLAC 50 Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 + ICP G T I C+ CG C EACP D + G A + Sbjct: 51 KMICP------CPGAIDVVQTDGVWNPQITQGHCVRCGYCVEACPEDVLTSGDL--LARK 102 Query: 130 TRQELYYDKERLLNN 144 Q L + E ++ Sbjct: 103 KDQGLVFTHEYIIKI 117 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 20/73 (27%), Gaps = 8/73 (10%) Query: 59 GEERCIACKLCEAICPAQ--------AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 C C C CPA A + + +C C +C Sbjct: 118 DTNLCTGCGNCSTACPANHEFDPQISAGGTSNSVEGVIRVEFGKNKVMHNERCKGCKVCM 177 Query: 111 EACPVDAIVEGPN 123 E CP AI N Sbjct: 178 ETCPNGAIHVIRN 190 >gi|159043831|ref|YP_001532625.1| formate dehydrogenase subunit alpha [Dinoroseobacter shibae DFL 12] gi|157911591|gb|ABV93024.1| formate dehydrogenase, alpha subunit [Dinoroseobacter shibae DFL 12] Length = 933 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 5/66 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114 + CI C LC C + + G +D + C+ CG C +ACP Sbjct: 152 NLDACIQCGLCVRACR-EVQVNDVIGMAGRGHDAYPVFDLDDPMGDSTCVACGECVQACP 210 Query: 115 VDAIVE 120 A++E Sbjct: 211 TGALME 216 >gi|95929042|ref|ZP_01311787.1| 4Fe-4S ferredoxin, iron-sulfur binding [Desulfuromonas acetoxidans DSM 684] gi|95134943|gb|EAT16597.1| 4Fe-4S ferredoxin, iron-sulfur binding [Desulfuromonas acetoxidans DSM 684] Length = 384 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 44/120 (36%), Gaps = 14/120 (11%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 +IF+ L+ FVG L + ++ + PF + + ++ + + Sbjct: 265 KIFKPLKLSLWGWGFVGGILLGSLFVYRPWCHLFCPFG---LTGWLFEKLSVFKIKVDYD 321 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 +CI C+ CE CP+ + C CG C E+CP DA+ Sbjct: 322 KCIDCRSCEKACPSTVMKAILDQDKRVIP-----------DCFSCGNCLESCPTDAVSFS 370 Score = 35.1 bits (79), Expect = 2.9, Method: Composition-based stats. Identities = 14/82 (17%), Positives = 20/82 (24%), Gaps = 6/82 (7%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 PF+ + C CP + Sbjct: 259 HEIDPFKIFKPLKLSLWGWGFVGGILLGSLFVYRPWCHLFCPFGLTGWLFEKLSVFKIK- 317 Query: 93 TVRYDIDMIKCIYCGLCQEACP 114 +D KCI C C++ACP Sbjct: 318 -----VDYDKCIDCRSCEKACP 334 >gi|322832829|ref|YP_004212856.1| electron transport complex, RnfABCDGE type, B subunit [Rahnella sp. Y9602] gi|321168030|gb|ADW73729.1| electron transport complex, RnfABCDGE type, B subunit [Rahnella sp. Y9602] Length = 188 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 21/66 (31%), Gaps = 10/66 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C C CP AI + + + C C LC CP D Sbjct: 110 YIDESNCIGCTKCIQACPVDAIVGAT----------RAVHTVITDLCTGCDLCVAPCPTD 159 Query: 117 AIVEGP 122 I P Sbjct: 160 CIEMLP 165 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 14/36 (38%), Positives = 15/36 (41%) Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 G ID CI C C +ACPVDAI Sbjct: 96 GEDAAAAVPVRKVAYIDESNCIGCTKCIQACPVDAI 131 >gi|301060597|ref|ZP_07201432.1| 2Fe-2S iron-sulfur cluster binding domain protein [delta proteobacterium NaphS2] gi|300445300|gb|EFK09230.1| 2Fe-2S iron-sulfur cluster binding domain protein [delta proteobacterium NaphS2] Length = 693 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 38/112 (33%), Gaps = 10/112 (8%) Query: 56 YPNGEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 Y ERCI C+ C +C AI + + + I C +C C E Sbjct: 137 YIRDLERCILCERCVRMCQEVRGIGAIGLINRGIKTYVGTQNNVP-IMDSGCKFCEACVE 195 Query: 112 ACPVDAIVEGPNFEFATETRQELYYDKERLLNNGD---RWESEIVRNIVTDS 160 CP AI++ F +E R+ G R+ I D+ Sbjct: 196 VCPSGAIMDKRTF--TSEEREAFILPCTNTCPAGIDVSRYVRLIAEGRYQDA 245 >gi|300959104|ref|ZP_07171191.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 175-1] gi|300314283|gb|EFJ64067.1| electron transport complex, RnfABCDGE type, C subunit [Escherichia coli MS 175-1] Length = 468 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 36/109 (33%), Gaps = 9/109 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CPA + + G + ++ CI CG C CP Sbjct: 264 PQEEQSCIRCSACADACPAD-LLPQQLFWFSKGQQHDKATTHNIADCIECGACAWVCP-S 321 Query: 117 AIVEGPNF-----EFATETRQE--LYYDKERLLNNGDRWESEIVRNIVT 158 I F E A ++E K R R E E + Sbjct: 322 NIPLVQYFRQEKAEIAAIRQEEKRAAEAKARFEARQARLEREKAARLER 370 >gi|255524147|ref|ZP_05391107.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium carboxidivorans P7] gi|296186604|ref|ZP_06855006.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium carboxidivorans P7] gi|255512132|gb|EET88412.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium carboxidivorans P7] gi|296048641|gb|EFG88073.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium carboxidivorans P7] Length = 441 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 22/52 (42%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 CI C C +CP + + G + + +++ C+ CG C CP Sbjct: 366 CIHCGRCVEVCPMHLVPSKLSILGERGLYEQAKEEANLLDCVECGSCVYVCP 417 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 8/15 (53%), Positives = 9/15 (60%) Query: 100 MIKCIYCGLCQEACP 114 CI+CG C E CP Sbjct: 363 ESACIHCGRCVEVCP 377 >gi|238782630|ref|ZP_04626661.1| Pyruvate-flavodoxin oxidoreductase [Yersinia bercovieri ATCC 43970] gi|238716557|gb|EEQ08538.1| Pyruvate-flavodoxin oxidoreductase [Yersinia bercovieri ATCC 43970] Length = 1177 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 24/143 (16%), Positives = 32/143 (22%), Gaps = 32/143 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A + C C C A C Sbjct: 646 MLAGLGDAL------PVSAFPPDGTWPLGTTAWEKRNIAENIPIWQPDLCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHD----------------GTRRTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVIPPDAMAGAPESLQSLDVKARDMRGQKYVLQVAPEDCTGCNLCYEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETRQ 132 AI P E R Sbjct: 760 RQNPEIRAINMKPRLEHLVAERG 782 >gi|328474564|gb|EGF45369.1| electron transport complex protein RnfB [Vibrio parahaemolyticus 10329] Length = 198 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 25/84 (29%), Gaps = 10/84 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 + S E+ CI C C CP AI + + + Sbjct: 90 VEPEESAHDLDSKVPTVAFIHEDMCIGCTKCIQACPVDAIVGGTK----------AVHTV 139 Query: 99 DMIKCIYCGLCQEACPVDAIVEGP 122 +C C LC CP D I P Sbjct: 140 IKDECTGCDLCVAPCPTDCIEMIP 163 >gi|255527529|ref|ZP_05394396.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Clostridium carboxidivorans P7] gi|296187916|ref|ZP_06856308.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium carboxidivorans P7] gi|255508767|gb|EET85140.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Clostridium carboxidivorans P7] gi|296047042|gb|EFG86484.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium carboxidivorans P7] Length = 723 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 27/88 (30%), Gaps = 16/88 (18%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIE--------------SGPRCHDGTRRTVRY 96 A+ ++CI C C +CP AI Sbjct: 232 VAINVPEWQMDKCIQCNQCAFVCPHAAIRPILANEAEVAAAPAGFEAKDASGAKGLKFHM 291 Query: 97 DIDMIKCIYCGLCQEACP--VDAIVEGP 122 + + C+ CG C + CP A+V P Sbjct: 292 AVSPLDCLGCGNCADICPAKEKALVMKP 319 >gi|291614848|ref|YP_003525005.1| electron transport complex, RnfABCDGE type, B subunit [Sideroxydans lithotrophicus ES-1] gi|291584960|gb|ADE12618.1| electron transport complex, RnfABCDGE type, B subunit [Sideroxydans lithotrophicus ES-1] Length = 184 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 26/69 (37%), Gaps = 10/69 (14%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E+ CI C LC CP AI + + I +C C LC CPVD Sbjct: 106 FIDEQTCIGCTLCLQACPVDAIVGAAKQ----------MHTIIASECTGCELCIAPCPVD 155 Query: 117 AIVEGPNFE 125 I P E Sbjct: 156 CISMLPIGE 164 >gi|121534105|ref|ZP_01665930.1| electron transport complex, RnfABCDGE type, C subunit [Thermosinus carboxydivorans Nor1] gi|121307208|gb|EAX48125.1| electron transport complex, RnfABCDGE type, C subunit [Thermosinus carboxydivorans Nor1] Length = 439 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 20/54 (37%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 CI C C CP + G + + D++ C+ CG C CP Sbjct: 363 RPCIRCGRCVEACPMGLVPSMLSVLGERGLYAVAKDEHDLLDCVECGSCVYVCP 416 >gi|114706714|ref|ZP_01439614.1| putative ferredoxin [Fulvimarina pelagi HTCC2506] gi|114537662|gb|EAU40786.1| putative ferredoxin [Fulvimarina pelagi HTCC2506] Length = 679 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 9/73 (12%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + C C C + CP A+ + C+ CG+C CP + Sbjct: 515 HVDKNACTLCMACVSACPVDALRANPDK---------PQLRFVESACVQCGICSATCPEN 565 Query: 117 AIVEGPNFEFATE 129 AI + + E Sbjct: 566 AITLEARYNVSPE 578 Score = 38.5 bits (88), Expect = 0.29, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 18/58 (31%), Gaps = 11/58 (18%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C +CP AIT ID C CG C CP A+ Sbjct: 283 TGCTKCIDVCPPGAITPAGDEVL-----------IDTAICGGCGNCAAHCPTGAVSYT 329 >gi|326388440|ref|ZP_08210036.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Novosphingobium nitrogenifigens DSM 19370] gi|326207172|gb|EGD57993.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Novosphingobium nitrogenifigens DSM 19370] Length = 470 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 22/67 (32%), Gaps = 9/67 (13%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 RCI C C CP G I+ CI G C++AC Sbjct: 80 IHPRIDPARCIGCGACIRACP---------ETDALGLIGRTAVLIEPWACIGHGTCRDAC 130 Query: 114 PVDAIVE 120 P DAI Sbjct: 131 PTDAITL 137 >gi|317491980|ref|ZP_07950413.1| ferredoxin oxidoreductase [Enterobacteriaceae bacterium 9_2_54FAA] gi|316920005|gb|EFV41331.1| ferredoxin oxidoreductase [Enterobacteriaceae bacterium 9_2_54FAA] Length = 1177 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 22/147 (14%), Positives = 33/147 (22%), Gaps = 32/147 (21%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P T + + A C C C A C Sbjct: 646 MLAGLGDAL------PVSAFPPDGTWPTGTTRWEKRNIAEEIPIWEAPLCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTRRTVRY----------------DIDMIKCIYCGLCQEACPV-- 115 P AI + + + C C LC E CP Sbjct: 700 PHSAIRAKVVMPEAMEHAPDSLHSLDVKARDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETRQELYY 136 AI + E ++ + Sbjct: 760 RQNPEIKAINMKSRLDHLAEEKENFDF 786 >gi|313651254|gb|EFS15652.1| uncharacterized protein yeiA [Shigella flexneri 2a str. 2457T] gi|332756236|gb|EGJ86587.1| hypothetical protein SF274771_2646 [Shigella flexneri 2747-71] gi|332765954|gb|EGJ96164.1| dihydroorotate dehydrogenase family protein [Shigella flexneri 2930-71] gi|333001825|gb|EGK21391.1| hypothetical protein SFK218_3124 [Shigella flexneri K-218] gi|333016664|gb|EGK35993.1| hypothetical protein SFK304_2940 [Shigella flexneri K-304] Length = 282 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + ++C+ C C C G + + + +T + K Sbjct: 195 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 248 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 249 CVGCLLCGHVCPVGCIELG 267 >gi|297618020|ref|YP_003703179.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Syntrophothermus lipocalidus DSM 12680] gi|297145857|gb|ADI02614.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Syntrophothermus lipocalidus DSM 12680] Length = 373 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 5/62 (8%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++C C C CP AI++ G R ID KC CG C +C +I Sbjct: 193 DKCTGCGRCAEWCPTGAISM-----VERGEGEKPRAVIDYEKCYGCGECVISCLFGSINI 247 Query: 121 GP 122 Sbjct: 248 SW 249 Score = 42.0 bits (97), Expect = 0.030, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 18/61 (29%), Gaps = 4/61 (6%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM----IKCIYCGLCQEACPVDAIV 119 K E AI ++ + D KC CG C E CP AI Sbjct: 152 THFKCHELTGIGGAIKNVGMGLGARSGKQQMHSDFQPRLKEDKCTGCGRCAEWCPTGAIS 211 Query: 120 E 120 Sbjct: 212 M 212 >gi|258516627|ref|YP_003192849.1| formate dehydrogenase, alpha subunit [Desulfotomaculum acetoxidans DSM 771] gi|257780332|gb|ACV64226.1| formate dehydrogenase, alpha subunit [Desulfotomaculum acetoxidans DSM 771] Length = 893 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 7/88 (7%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTV 94 +P EK + +R +CI C C C Q ++ + + Sbjct: 125 FPGEKHNYPIENENPFIVR----DMNKCILCGKCVRACAEIQGRSVIDFAYRGFDAKVSP 180 Query: 95 RYDID--MIKCIYCGLCQEACPVDAIVE 120 D+ +C++CG C CPV A+ E Sbjct: 181 AMDLPLGESECVFCGSCVAVCPVGALSE 208 >gi|218782193|ref|YP_002433511.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfatibacillum alkenivorans AK-01] gi|218763577|gb|ACL06043.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfatibacillum alkenivorans AK-01] Length = 320 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 31/67 (46%), Gaps = 11/67 (16%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + ++C+ C C C A+ ++ G R ++ +C+ CG+C + CP A Sbjct: 251 HDPDKCLGCGQCVEACGFLAVKMKDG-----------RPVVESDRCLGCGICVDKCPSGA 299 Query: 118 IVEGPNF 124 IV ++ Sbjct: 300 IVLERDY 306 Score = 35.5 bits (80), Expect = 2.6, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 13/34 (38%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 D KC+ CG C EAC A+ R Sbjct: 251 HDPDKCLGCGQCVEACGFLAVKMKDGRPVVESDR 284 >gi|187251216|ref|YP_001875698.1| pyruvate:ferredoxin oxidoreductase [Elusimicrobium minutum Pei191] gi|186971376|gb|ACC98361.1| Pyruvate:ferredoxin oxidoreductase [Elusimicrobium minutum Pei191] Length = 1185 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 19/110 (17%), Positives = 27/110 (24%), Gaps = 23/110 (20%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV--------------- 94 AL E CI C +C +CP AI +++ Sbjct: 679 NIALLCPQWDPEVCIQCGICSLVCPHAAIRMKAYSADQLDNAPKTFKSADGKADLAGNKV 738 Query: 95 RYDIDMIKCIYCGLCQEACPV--------DAIVEGPNFEFATETRQELYY 136 + + C CG C CP AI + Sbjct: 739 TIQVAVEDCTGCGACVFNCPAKNKTNPERKAINMTHQLPLRDTEIDNFAF 788 >gi|218779713|ref|YP_002431031.1| hypothetical protein Dalk_1866 [Desulfatibacillum alkenivorans AK-01] gi|218761097|gb|ACL03563.1| protein of unknown function DUF362 [Desulfatibacillum alkenivorans AK-01] Length = 371 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 34/93 (36%), Gaps = 11/93 (11%) Query: 28 FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH 87 FK T P G RF + E++C C LC CP +A+T+ Sbjct: 277 FKMPVTF-IPGVMGMILNRFLSKWINCLPQIQEDKCKQCGLCVKHCPTKAMTMAKKSYPK 335 Query: 88 DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 CI C CQE CP DAIV Sbjct: 336 ADKNV----------CINCYCCQEMCPEDAIVL 358 >gi|302669639|ref|YP_003829599.1| pyruvate:ferredoxin oxidoreductase [Butyrivibrio proteoclasticus B316] gi|302394112|gb|ADL33017.1| pyruvate:ferredoxin oxidoreductase [Butyrivibrio proteoclasticus B316] Length = 1176 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 27/103 (26%), Gaps = 20/103 (19%) Query: 31 KTTINYPFEKGSTSPRF-----RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 K + P+ G T RG + CI C C +CP AI + Sbjct: 660 KVSDVLPYVAGDTPSGSAAFEKRGIAVNVPAWD-ATTCIGCGFCSLVCPHAAIRTIAMTD 718 Query: 86 CHD--------------GTRRTVRYDIDMIKCIYCGLCQEACP 114 I + C CG C CP Sbjct: 719 DEIAKAPEGLQTKPLVGMDGYKYSVVISALDCTGCGSCANVCP 761 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 9/24 (37%), Positives = 10/24 (41%), Gaps = 3/24 (12%) Query: 103 CIYCGLCQEACPVDAIV---EGPN 123 CI CG C CP AI + Sbjct: 696 CIGCGFCSLVCPHAAIRTIAMTDD 719 >gi|282165441|ref|YP_003357826.1| tungsten-containing formylmethanofuran dehydrogenase subunit F [Methanocella paludicola SANAE] gi|282157755|dbj|BAI62843.1| tungsten-containing formylmethanofuran dehydrogenase subunit F [Methanocella paludicola SANAE] Length = 364 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 31/63 (49%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++C C +C CP +AI+ G +T + D+D KC YCG+C CP DAI Sbjct: 30 DLDKCTGCGVCIDACPEEAISEGPLGAVGRGKAKTSKIDVDAKKCSYCGVCNIMCPFDAI 89 Query: 119 VEG 121 Sbjct: 90 KLT 92 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 10/93 (10%) Query: 36 YPFE---KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 P E +G RG+ + ++C C +C +CP AI + + Sbjct: 44 CPEEAISEGPLGAVGRGKAKTSKIDVDAKKCSYCGVCNIMCPFDAIKLTVDGQPKLPIIE 103 Query: 93 TVRY-------DIDMIKCIYCGLCQEACPVDAI 118 + ID KC C LC+E CP DAI Sbjct: 104 QQGFPQIAKDAKIDPEKCTRCVLCEEVCPRDAI 136 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 2/62 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E++C C +C +C A I+ ++ + + D KC YC LC ACP +AI Sbjct: 163 DEDKCTLCGICAELC--DAYKIDYKEPTPLTVKKIGKLNFDEKKCDYCQLCISACPEEAI 220 Query: 119 VE 120 Sbjct: 221 KL 222 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 41/106 (38%), Gaps = 11/106 (10%) Query: 36 YPFEKGSTSPRFRGEHALRRYPN-GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 P E + L + E+CI C C+ ICP A +E Sbjct: 215 CPEEAIKLERKELAAPKLSGKVDIDLEKCITCSWCQVICPRDAAKVEKLFEGE------- 267 Query: 95 RYDIDMIKC-IYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139 Y++ +C C C E CP +A+ P E A + +L Y+K+ Sbjct: 268 -YELVTDRCPAGCSTCVEVCPANALYIPPVEE-AGQKPGKLSYNKD 311 Score = 42.0 bits (97), Expect = 0.030, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 39/107 (36%), Gaps = 6/107 (5%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE------SGPRCHDGTRRT 93 K + + E+C C LCE +CP AI E T+ Sbjct: 98 KLPIIEQQGFPQIAKDAKIDPEKCTRCVLCEEVCPRDAIKREVADVDQGHKASSTNTKYA 157 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140 + + +D KC CG+C E C I + +L +D+++ Sbjct: 158 LEFKLDEDKCTLCGICAELCDAYKIDYKEPTPLTVKKIGKLNFDEKK 204 Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 7/81 (8%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93 + P + F GE+ L C C +CPA A+ I P + ++ Sbjct: 251 VICPRDAAKVEKLFEGEYELVTDRCPAG----CSTCVEVCPANALYI---PPVEEAGQKP 303 Query: 94 VRYDIDMIKCIYCGLCQEACP 114 + + C+YCG C +ACP Sbjct: 304 GKLSYNKDFCMYCGACIKACP 324 Score = 38.2 bits (87), Expect = 0.35, Method: Composition-based stats. Identities = 27/88 (30%), Positives = 38/88 (43%), Gaps = 5/88 (5%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 K T + L ++C C+LC + CP +AI +E + + + D Sbjct: 183 DYKEPTPLTVKKIGKLNFDE---KKCDYCQLCISACPEEAIKLERKELAAP--KLSGKVD 237 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFE 125 ID+ KCI C CQ CP DA FE Sbjct: 238 IDLEKCITCSWCQVICPRDAAKVEKLFE 265 Score = 37.0 bits (84), Expect = 0.88, Method: Composition-based stats. Identities = 14/26 (53%), Positives = 19/26 (73%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGP 122 +D+ KC CG+C +ACP +AI EGP Sbjct: 28 TVDLDKCTGCGVCIDACPEEAISEGP 53 >gi|262198332|ref|YP_003269541.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haliangium ochraceum DSM 14365] gi|262081679|gb|ACY17648.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haliangium ochraceum DSM 14365] Length = 739 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 38/113 (33%), Gaps = 30/113 (26%) Query: 61 ERCIACKLCEAICPAQ---------------------AITIESGPRCHDGTRRTVRYD-- 97 +RCI CK+CE C + T ++++D Sbjct: 225 DRCIDCKMCEKACEDRYGSKRLTLGGYQLGMIDFVYTCRTCSDQRCVSGCEYDSIKFDAS 284 Query: 98 -----IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNG 145 I+ C+ C +C ++CP AI + + + + K RL G Sbjct: 285 RGEVVINEATCVGCTMCAQSCPFHAIEMVDIEDPSHPNHRTAF--KARLDEAG 335 Score = 38.9 bits (89), Expect = 0.21, Method: Composition-based stats. Identities = 30/123 (24%), Positives = 36/123 (29%), Gaps = 40/123 (32%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHD---------------------GTRRTVRYD 97 E C+ C +C CP AI + GT R R Sbjct: 291 NEATCVGCTMCAQSCPFHAIEMVDIEDPSHPNHRTAFKARLDEAGSLKFGPGTGRVARPR 350 Query: 98 IDMIKCIYC-----GLCQEACPVDA-IVEGPNFEF------------ATETRQELYYDKE 139 KC +C C ACP A I P F A R +L DK+ Sbjct: 351 RIANKCDHCVQFFDQACVSACPTSALIEISPEQLFRERSASARTLAEAGYDR-DLRPDKK 409 Query: 140 RLL 142 LL Sbjct: 410 ELL 412 >gi|126178175|ref|YP_001046140.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanoculleus marisnigri JR1] gi|125860969|gb|ABN56158.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Methanoculleus marisnigri JR1] Length = 367 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 15/75 (20%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 ERC C C +CP A+T+ G ++ C+ CG C ACP Sbjct: 188 YVEIERCGGCGKCTTVCPQAAMTLADGRAV-----------LNPEHCVGCGDCMRACPEG 236 Query: 117 AIVEGPNFEFATETR 131 AI F++ TE R Sbjct: 237 AI----EFDWTTEIR 247 >gi|150018464|ref|YP_001310718.1| nitroreductase [Clostridium beijerinckii NCIMB 8052] gi|149904929|gb|ABR35762.1| nitroreductase [Clostridium beijerinckii NCIMB 8052] Length = 268 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 10/58 (17%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+CI C +C CP + +E+ ++ CI CG C CP +AI Sbjct: 9 EKCIKCGMCVVECPTGVLKLEADGPKE----------VNPNACIECGHCVAVCPKEAI 56 >gi|317970221|ref|ZP_07971611.1| bidirectional hydrogenase complex protein HoxU [Synechococcus sp. CB0205] Length = 238 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 22/66 (33%), Gaps = 4/66 (6%) Query: 59 GEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDIDMI--KCIYCGLCQEACP 114 RCI C C +C A + G R + + C CG C E CP Sbjct: 144 DHNRCILCTRCVRVCDEVEGAHVWDVGWRGEQCQIISGLAEAWGEVQACTDCGKCVEVCP 203 Query: 115 VDAIVE 120 A+ Sbjct: 204 TGALFH 209 >gi|262165248|ref|ZP_06032985.1| electron transport complex protein RnfB [Vibrio mimicus VM223] gi|262024964|gb|EEY43632.1| electron transport complex protein RnfB [Vibrio mimicus VM223] Length = 195 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 24/79 (30%), Gaps = 10/79 (12%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103 S E+ CI C C CP AI + + + +C Sbjct: 95 SAHDLDNKVKMVAFIHEDMCIGCTKCIQACPVDAIVGGNK----------AVHTVIKNEC 144 Query: 104 IYCGLCQEACPVDAIVEGP 122 C LC CP D I P Sbjct: 145 TGCDLCVAPCPTDCIEMIP 163 >gi|253698761|ref|YP_003019950.1| molybdopterin oxidoreductase Fe4S4 region [Geobacter sp. M21] gi|251773611|gb|ACT16192.1| molybdopterin oxidoreductase Fe4S4 region [Geobacter sp. M21] Length = 966 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 28/103 (27%), Gaps = 18/103 (17%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P E + + +RCI C C C A+ G G R Sbjct: 724 PEEDMYPAHEHKKHR--WGMAIDLQRCIGCGACAVACYAENNIPVIGKEQVGGGREMAWL 781 Query: 97 DIDMIK--------------CIYCGL--CQEACPVDAIVEGPN 123 + + C +C C+ CPV A V Sbjct: 782 RVPPYRMPGDRLRYAWLPLHCQHCDAAPCEPVCPVFAAVHSEE 824 Score = 36.2 bits (82), Expect = 1.3, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 1/37 (2%) Query: 78 ITIESGPRCHDGTRRTVR-YDIDMIKCIYCGLCQEAC 113 E ++ ID+ +CI CG C AC Sbjct: 722 YRPEEDMYPAHEHKKHRWGMAIDLQRCIGCGACAVAC 758 >gi|237733621|ref|ZP_04564102.1| pyruvate/ketoisovalerate oxidoreductase [Mollicutes bacterium D7] gi|229383219|gb|EEO33310.1| pyruvate/ketoisovalerate oxidoreductase [Coprobacillus sp. D7] Length = 371 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 5/96 (5%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 +E+CI C C CP E G + G + V +D C C C E CP A+V Sbjct: 255 QEKCIQCAQCYITCPDMVFQFEPG--IYKGRKMMVNKGLDYHHCKGCLRCVEICPTQALV 312 Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRN 155 G E + + +K+ ++ + D +E + Sbjct: 313 SGVEREHS--NLKWFIRNKDLIVEHMD-YEDVGANS 345 >gi|237653892|ref|YP_002890206.1| electron transport complex protein RnfC [Thauera sp. MZ1T] gi|237625139|gb|ACR01829.1| electron transport complex, RnfABCDGE type, C subunit [Thauera sp. MZ1T] Length = 573 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 24/76 (31%), Gaps = 2/76 (2%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L E+ CI C C CP + E + + CI CG C Sbjct: 359 LFPPAPPEQPCIRCTECAKACPVELQPFELY-WFSRSKNFGKAQEYHLFDCIECGCCAYV 417 Query: 113 CPVDAIVEGPNFEFAT 128 CP I + F+ Sbjct: 418 CPSH-IPLVDYYRFSK 432 >gi|222480730|ref|YP_002566967.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Halorubrum lacusprofundi ATCC 49239] gi|222453632|gb|ACM57897.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Halorubrum lacusprofundi ATCC 49239] Length = 109 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 29/82 (35%), Gaps = 2/82 (2%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100 G P + + C+A C CP P + R+ D Sbjct: 24 GPVEPPEKQGIRGTHVAVDFDICLADGACLEDCPVDVFEWVDTPGHPESERKASPVD--E 81 Query: 101 IKCIYCGLCQEACPVDAIVEGP 122 +CI C LC + CPVDAI P Sbjct: 82 DQCIDCMLCVDVCPVDAIDVDP 103 >gi|15669380|ref|NP_248188.1| polyferredoxin MvhB [Methanocaldococcus jannaschii DSM 2661] gi|41018414|sp|Q58593|VHUB_METJA RecName: Full=Polyferredoxin protein vhuB gi|1591821|gb|AAB99195.1| polyferredoxin (mvhB) [Methanocaldococcus jannaschii DSM 2661] Length = 394 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + +CI C +C CP AI +G + +++++ KCIYC C E CP D I Sbjct: 167 DKSKCIYCSICAQTCPWNAIF-VAGKIPKKRRKEVKKFEVNAEKCIYCLKCVEVCPGDMI 225 Query: 119 VEGPN 123 Sbjct: 226 KVDEE 230 Score = 41.2 bits (95), Expect = 0.046, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 28/73 (38%), Gaps = 3/73 (4%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 + + C C C +CP A+ ++ R + KC CG C EACP+ Sbjct: 29 DIDSFKVCNLCMECVKVCPTGALV---EEEIEVNGKKLKRVNYLAHKCEKCGQCAEACPI 85 Query: 116 DAIVEGPNFEFAT 128 +F ++ Sbjct: 86 GIKKVDDDFPYSK 98 Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 3/54 (5%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 CI C C CP A+ + + + R + C CG C E CP Sbjct: 304 RMCIVCGACTVACPTGALKL---GKIEHNGKEYNRIEFSPYLCDKCGKCVEVCP 354 Score = 38.5 bits (88), Expect = 0.32, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 11/57 (19%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 C+ C +C CP AIT+E+ ID KCIYC +C + CP +AI Sbjct: 142 CVGCGICVPECPVNAITLENNKAV-----------IDKSKCIYCSICAQTCPWNAIF 187 Score = 37.4 bits (85), Expect = 0.62, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 1/69 (1%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI-DMIKCIYCGLCQEACP 114 +P + C+ C+ C +CP + I++ + + I C+ CG+C CP Sbjct: 94 FPYSKGHCVLCQKCIDVCPIEIISLPGVIDKPKKEIKPPKEPIAVTDACVGCGICVPECP 153 Query: 115 VDAIVEGPN 123 V+AI N Sbjct: 154 VNAITLENN 162 >gi|323172832|gb|EFZ58464.1| pyruvate:ferredoxin oxidoreductase [Escherichia coli LT-68] Length = 1174 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGSWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|301304965|ref|ZP_07211068.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli MS 124-1] gi|300839795|gb|EFK67555.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli MS 124-1] gi|315253595|gb|EFU33563.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli MS 85-1] Length = 1174 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGSWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|300901793|ref|ZP_07119828.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli MS 84-1] gi|300406005|gb|EFJ89543.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli MS 84-1] Length = 1174 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGSWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|289432857|ref|YP_003462730.1| glutamate synthase (NADPH) [Dehalococcoides sp. GT] gi|288946577|gb|ADC74274.1| Glutamate synthase (NADPH) [Dehalococcoides sp. GT] Length = 500 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 12/89 (13%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 +RCI CK+C C ++ + + C+ C C CP A+V Sbjct: 16 DRCIKCKVCITQCSFDTHYYDADDD---------QIKVRNQNCVGCHRCVTFCPTGALVV 66 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWE 149 N E RQ + E + + + E Sbjct: 67 RNN---PLEYRQNANWTPEMIEDIFKQAE 92 >gi|260431153|ref|ZP_05785124.1| formate dehydrogenase, alpha subunit [Silicibacter lacuscaerulensis ITI-1157] gi|260414981|gb|EEX08240.1| formate dehydrogenase, alpha subunit [Silicibacter lacuscaerulensis ITI-1157] Length = 927 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 28/85 (32%), Gaps = 10/85 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD- 97 EK + CI C LC C + + G V +D Sbjct: 135 EKIPLLDDSHVAMRVNLD-----ACINCNLCVRACR-EVQVNDVIGMAGRGHTAQVVFDQ 188 Query: 98 ---IDMIKCIYCGLCQEACPVDAIV 119 + C+ CG C +ACP A++ Sbjct: 189 NDPMGESTCVACGECVQACPTGALM 213 >gi|237723324|ref|ZP_04553805.1| pyruvate-flavodoxin oxidoreductase [Bacteroides sp. 2_2_4] gi|293373150|ref|ZP_06619512.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides ovatus SD CMC 3f] gi|229447846|gb|EEO53637.1| pyruvate-flavodoxin oxidoreductase [Bacteroides sp. 2_2_4] gi|292631798|gb|EFF50414.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides ovatus SD CMC 3f] Length = 1182 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 28/81 (34%), Gaps = 15/81 (18%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG A N E CI C C +CP A + T Sbjct: 676 RGVAAFVPEWN-PENCIQCNKCAYVCPHASIRPFVLDAEEQKGAKFEQLKAVGKAFDGMT 734 Query: 94 VRYDIDMIKCIYCGLCQEACP 114 R +D++ C+ CG C + CP Sbjct: 735 FRIQVDVLDCLGCGNCADICP 755 >gi|218261658|ref|ZP_03476393.1| hypothetical protein PRABACTJOHN_02061 [Parabacteroides johnsonii DSM 18315] gi|218223886|gb|EEC96536.1| hypothetical protein PRABACTJOHN_02061 [Parabacteroides johnsonii DSM 18315] Length = 1182 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 27/82 (32%), Gaps = 16/82 (19%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG A N CI C C +CP A + + Sbjct: 676 RGVAAFVPVWNE-ANCIQCNQCAYVCPHASIRPFVLNDEEQKGANFPMLDVKAPATMKGM 734 Query: 94 V-RYDIDMIKCIYCGLCQEACP 114 R +D++ C+ CG C + CP Sbjct: 735 KFRMQVDVLDCLGCGNCADICP 756 >gi|160894561|ref|ZP_02075337.1| hypothetical protein CLOL250_02113 [Clostridium sp. L2-50] gi|156863872|gb|EDO57303.1| hypothetical protein CLOL250_02113 [Clostridium sp. L2-50] Length = 483 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 22/70 (31%), Gaps = 8/70 (11%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY--------DIDMIKCIYCGL 108 +C C C CP AI P + I+ KCI CG Sbjct: 125 YIDPSKCKECGQCAKACPYNAIADLVRPCMKSCPVDAISVADNGTGIAVINQDKCIQCGS 184 Query: 109 CQEACPVDAI 118 C CP AI Sbjct: 185 CVHKCPFGAI 194 Score = 37.8 bits (86), Expect = 0.56, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 13/60 (21%) Query: 61 ERCIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C C+A C AI++ ID KC CG C +ACP +AI Sbjct: 98 DNCQKCMGKACQAACRFGAISMGRDKSY-----------IDPSKCKECGQCAKACPYNAI 146 >gi|160886479|ref|ZP_02067482.1| hypothetical protein BACOVA_04490 [Bacteroides ovatus ATCC 8483] gi|298480786|ref|ZP_06998982.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides sp. D22] gi|156108364|gb|EDO10109.1| hypothetical protein BACOVA_04490 [Bacteroides ovatus ATCC 8483] gi|295085033|emb|CBK66556.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [Bacteroides xylanisolvens XB1A] gi|298273220|gb|EFI14785.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides sp. D22] Length = 1182 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 28/81 (34%), Gaps = 15/81 (18%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG A N E CI C C +CP A + T Sbjct: 676 RGVAAFVPEWN-PENCIQCNKCAYVCPHASIRPFVLDAEEQKGAKFEQLKAVGKAFDGMT 734 Query: 94 VRYDIDMIKCIYCGLCQEACP 114 R +D++ C+ CG C + CP Sbjct: 735 FRIQVDVLDCLGCGNCADICP 755 >gi|150377591|ref|YP_001314186.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Sinorhizobium medicae WSM419] gi|150032138|gb|ABR64253.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sinorhizobium medicae WSM419] Length = 679 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 23/72 (31%), Gaps = 9/72 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C C + CP A++ C+ CGLC CP AI Sbjct: 520 NVDACTLCLSCVSACPTGALSDSEERPALY---------FAESACVQCGLCAATCPEKAI 570 Query: 119 VEGPNFEFATET 130 P +F Sbjct: 571 ALVPQLDFQAWN 582 >gi|325294718|ref|YP_004281232.1| Glutamate synthase (NADPH) [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065166|gb|ADY73173.1| Glutamate synthase (NADPH) [Desulfurobacterium thermolithotrophum DSM 11699] Length = 505 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 27/98 (27%), Gaps = 25/98 (25%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 F+ YPF LR +C+ CK C C A + Sbjct: 1 MLFRKPQVAFYPF------------MVLRDDY----KCVRCKSCVDQCSFDATYYDEDLE 44 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 C+ C C+ CP DAI N Sbjct: 45 MIVNRN---------ENCVNCKRCEAFCPTDAIKVVKN 73 >gi|320160378|ref|YP_004173602.1| putative oxidoreductase [Anaerolinea thermophila UNI-1] gi|319994231|dbj|BAJ63002.1| putative oxidoreductase [Anaerolinea thermophila UNI-1] Length = 680 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 21/86 (24%), Gaps = 8/86 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA---QAITIESGPRCHDGTRR 92 P K + RCI C+ C C + Sbjct: 160 QPAWKPYPVDASHPNLVI-----DHNRCILCRRCVRACGELVGNYTLGIEERGANSMLIA 214 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAI 118 CI CG C + CP AI Sbjct: 215 DTGVPFGESTCISCGTCSQVCPTGAI 240 Score = 34.7 bits (78), Expect = 4.7, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 18/67 (26%), Gaps = 9/67 (13%) Query: 56 YPNGEERCIAC----KLCE---AICPAQAITIESGPRCHDGTRRTVRYD--IDMIKCIYC 106 + + C C CE + P + ID +CI C Sbjct: 126 FSDRNHFCPYCQVSGGDCELQNTALDMGMTHWDYQPAWKPYPVDASHPNLVIDHNRCILC 185 Query: 107 GLCQEAC 113 C AC Sbjct: 186 RRCVRAC 192 >gi|294636276|ref|ZP_06714681.1| pyruvate-ferredoxin oxidoreductase [Edwardsiella tarda ATCC 23685] gi|291090440|gb|EFE23001.1| pyruvate-ferredoxin oxidoreductase [Edwardsiella tarda ATCC 23685] Length = 639 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 29/144 (20%), Gaps = 32/144 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A C C C A C Sbjct: 108 MLAGLGDTL------PVSAFPPDGTWPVGTTRWEKRNIADAIPIWQPTLCTQCNHCVAAC 161 Query: 74 PA--------------QAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPV-- 115 P A + R RY + C C LC CP Sbjct: 162 PHAAIRAKVVDPAALTDAPDTLASLEVRSRDMRGQRYVLQVAPEDCTGCNLCVTVCPAAD 221 Query: 116 ------DAIVEGPNFEFATETRQE 133 AI P R Sbjct: 222 RQDPSIKAINMQPRLAHLATERAN 245 >gi|157145676|ref|YP_001452995.1| hypothetical protein CKO_01425 [Citrobacter koseri ATCC BAA-895] gi|157082881|gb|ABV12559.1| hypothetical protein CKO_01425 [Citrobacter koseri ATCC BAA-895] Length = 1174 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 29/167 (17%), Positives = 41/167 (24%), Gaps = 43/167 (25%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 P A +++ R G + + C C LC E CP Sbjct: 700 PHSAIRAKVVSPEAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757 Query: 116 --------DAIVEGPNFEFATETRQELYY-------DKERLLNNGDR 147 AI E E + + DK +L R Sbjct: 758 KDRQNPEIKAINMMSRLEHVEEEKVNYDFFLNLPEIDKSKLERIDIR 804 >gi|126729406|ref|ZP_01745220.1| benzoyl-CoA oxygenase, A subunit [Sagittula stellata E-37] gi|126710396|gb|EBA09448.1| benzoyl-CoA oxygenase, A subunit [Sagittula stellata E-37] Length = 395 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 11/73 (15%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 L+++ E CI C CE CP +AIT +D KC +C Sbjct: 1 MMNKPLKQHLIDPEICIRCYTCEMTCPIEAITHNDDNVV-----------VDPDKCNFCM 49 Query: 108 LCQEACPVDAIVE 120 C CP +I E Sbjct: 50 DCIPVCPTGSIDE 62 >gi|148554393|ref|YP_001261975.1| formate dehydrogenase subunit alpha [Sphingomonas wittichii RW1] gi|148499583|gb|ABQ67837.1| formate dehydrogenase, alpha subunit [Sphingomonas wittichii RW1] Length = 947 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 3/80 (3%) Query: 55 RYPNGEERCIACKLCEAICPAQAIT---IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T G + D +C+ CG C + Sbjct: 160 YFTFDSTKCIVCSRCVRACDEVQGTLALTVDGRGFQSHIAASQDQDFLSSECVSCGACVQ 219 Query: 112 ACPVDAIVEGPNFEFATETR 131 ACP A++E E T R Sbjct: 220 ACPTSALIEKSVIEKGTPDR 239 >gi|160879965|ref|YP_001558933.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium phytofermentans ISDg] gi|160428631|gb|ABX42194.1| nitrite and sulphite reductase 4Fe-4S region [Clostridium phytofermentans ISDg] Length = 287 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 11/58 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+CI C CE +C + AITI+ G ++D KC YCG C ++CP DA Sbjct: 164 EKCILCGACEKVCRSHAITIKDGKV-----------NVDYNKCNYCGRCAKSCPTDAW 210 >gi|291532617|emb|CBL05730.1| Uncharacterized Fe-S center protein [Megamonas hypermegale ART12/1] Length = 375 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 23/64 (35%), Gaps = 11/64 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++C+ C C IC A I ID KC+ CG C AC DAI Sbjct: 194 DTDKCVGCGACSRICAHGAPIITDRKCY-----------IDPDKCLGCGRCIGACHFDAI 242 Query: 119 VEGP 122 Sbjct: 243 KPTN 246 >gi|283785355|ref|YP_003365220.1| pyruvate-flavodoxin oxidoreductase [Citrobacter rodentium ICC168] gi|282948809|emb|CBG88405.1| probable pyruvate-flavodoxin oxidoreductase [Citrobacter rodentium ICC168] Length = 1174 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 36/144 (25%), Gaps = 36/144 (25%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPLGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 P A +++ R G + + + C C LC E CP Sbjct: 700 PHSAIRAKVVSPQDMENAPATLHSLDVKSRDMRGQKYML--QVAPEDCTGCNLCVEVCPA 757 Query: 116 --------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 758 KDRQNPEIKAINMMSRLEHVEEEK 781 >gi|258623674|ref|ZP_05718660.1| electron transport complex protein RnfB [Vibrio mimicus VM573] gi|262171979|ref|ZP_06039657.1| electron transport complex protein RnfB [Vibrio mimicus MB-451] gi|258584040|gb|EEW08803.1| electron transport complex protein RnfB [Vibrio mimicus VM573] gi|261893055|gb|EEY39041.1| electron transport complex protein RnfB [Vibrio mimicus MB-451] Length = 195 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 24/79 (30%), Gaps = 10/79 (12%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103 S E+ CI C C CP AI + + + +C Sbjct: 95 SAHDLDNKVKMVAFIHEDMCIGCTKCIQACPVDAIVGGNK----------AVHTVIKNEC 144 Query: 104 IYCGLCQEACPVDAIVEGP 122 C LC CP D I P Sbjct: 145 TGCDLCVAPCPTDCIEMIP 163 >gi|258627118|ref|ZP_05721914.1| electron transport complex protein RnfB [Vibrio mimicus VM603] gi|258580636|gb|EEW05589.1| electron transport complex protein RnfB [Vibrio mimicus VM603] Length = 195 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 24/79 (30%), Gaps = 10/79 (12%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103 S E+ CI C C CP AI + + + +C Sbjct: 95 SAHDLDNKVKMVAFIHEDMCIGCTKCIQACPVDAIVGGNK----------AVHTVIKNEC 144 Query: 104 IYCGLCQEACPVDAIVEGP 122 C LC CP D I P Sbjct: 145 TGCDLCVAPCPTDCIEMIP 163 >gi|212704088|ref|ZP_03312216.1| hypothetical protein DESPIG_02143 [Desulfovibrio piger ATCC 29098] gi|212672448|gb|EEB32931.1| hypothetical protein DESPIG_02143 [Desulfovibrio piger ATCC 29098] Length = 298 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 28/79 (35%), Gaps = 12/79 (15%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C++C C +CP A+ + D KC +CG C E CP A V Sbjct: 55 CVSCGACMQVCPNGAVVPLENGKMGR----------DTEKCTHCGACTEVCPNKARVMSG 104 Query: 123 NFEFATETRQELYYDKERL 141 E + K+ L Sbjct: 105 RIMTVEEVME--VVRKDWL 121 >gi|158522074|ref|YP_001529944.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfococcus oleovorans Hxd3] gi|158510900|gb|ABW67867.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus oleovorans Hxd3] Length = 385 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 2/58 (3%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 C C+ C + + T ID C CG+C E CPVDAIV G Sbjct: 287 CNCCKDCCDTFTLWRNGATPMINSTNYLSV--IDEDTCTGCGICVERCPVDAIVLGSE 342 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 10/63 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ C C +C CP AI + S + CI CG+C CP AI Sbjct: 318 DEDTCTGCGICVERCPVDAIVLGSEGTAVREEKY----------CIGCGICARFCPEGAI 367 Query: 119 VEG 121 Sbjct: 368 SLQ 370 >gi|158320076|ref|YP_001512583.1| indolepyruvate ferredoxin oxidoreductase [Alkaliphilus oremlandii OhILAs] gi|158140275|gb|ABW18587.1| Indolepyruvate ferredoxin oxidoreductase [Alkaliphilus oremlandii OhILAs] Length = 605 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 28/71 (39%), Gaps = 6/71 (8%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R + + E CI+C+ C ++ ++ ID C+ C Sbjct: 527 RYKLENPHFYVDPEICISCRSC---IKTNCPPLKMKKYEGIEKLKSS---IDPDMCVGCS 580 Query: 108 LCQEACPVDAI 118 +C + CPV+AI Sbjct: 581 ICAQVCPVNAI 591 >gi|15678133|ref|NP_275248.1| glutamate synthase (NADPH), alpha subunit [Methanothermobacter thermautotrophicus str. Delta H] gi|2621136|gb|AAB84604.1| glutamate synthase (NADPH), alpha subunit [Methanothermobacter thermautotrophicus str. Delta H] Length = 622 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 11/53 (20%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 C+ C CE +CP AI I +ID KCI CG C ACPV Sbjct: 170 CVFCGTCEIVCPTDAIKIVED-----------HAEIDKTKCIMCGSCLAACPV 211 Score = 37.0 bits (84), Expect = 0.80, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 25/80 (31%), Gaps = 15/80 (18%) Query: 48 RGEHALRRYPNGEER--CIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103 R L + G C C C C AI E+G ID C Sbjct: 31 RSAIFLNKMDTGYHAIVCQQCVDPSCARGCFRDAIRRENGAV-----------KIDQESC 79 Query: 104 IYCGLCQEACPVDAIVEGPN 123 + C LC CP+ AI Sbjct: 80 VGCKLCMLMCPIGAITYTDE 99 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 9/22 (40%), Positives = 13/22 (59%) Query: 103 CIYCGLCQEACPVDAIVEGPNF 124 C++CG C+ CP DAI + Sbjct: 170 CVFCGTCEIVCPTDAIKIVEDH 191 >gi|76666833|emb|CAJ31210.1| Iron-sulfur-binding protein, glutamate synthase subunit (DsrL/GltD) [uncultured sulfate-reducing bacterium] Length = 562 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 19/61 (31%), Gaps = 2/61 (3%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 +RC++C C + R Y I + C C C E CP I Sbjct: 504 QRCMSCGKCFDCST--CWSFCQDNAIVKPLTRGEPYKIKLDFCTGCKKCSEVCPCGYIEM 561 Query: 121 G 121 Sbjct: 562 H 562 >gi|41018387|sp|Q00388|VHUB_METVO RecName: Full=Polyferredoxin protein vhuB gi|1747410|emb|CAA43512.1| polyferredoxin [Methanococcus voltae PS] Length = 398 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 30/83 (36%), Gaps = 1/83 (1%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L Y + C C + +CP AI + + +R D + CI CG C Sbjct: 261 LVWYEDKCNYCGPCAIKCPLCPTNAINMINQKGLALPSRTKTDKDPEFRMCIRCGACVMK 320 Query: 113 CPVDAIVEGPN-FEFATETRQEL 134 CP A+ G E R E Sbjct: 321 CPTGALKMGKITHEGKEYNRIEF 343 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 11/77 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+CI C +C CP AI +G + + + + CI C C E CP D I Sbjct: 157 DTEKCIYCSVCAQTCPWNAIY-VAGKKPSKRQKEIKSFTVTEE-CIGCEKCVEVCPGDMI 214 Query: 119 VEGPNFEFATETRQELY 135 T R++L Sbjct: 215 ---------TYNREDLI 222 Score = 40.1 bits (92), Expect = 0.10, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 3/65 (4%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C C CP A+ + + + R + C CG C + CP D + Sbjct: 307 EFRMCIRCGACVMKCPTGALKM---GKITHEGKEYNRIEFSPALCNECGECVDVCPQDTL 363 Query: 119 VEGPN 123 + Sbjct: 364 KLTGD 368 Score = 38.9 bits (89), Expect = 0.21, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 31/80 (38%), Gaps = 11/80 (13%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 G R + E C+ C C +CP AI+IE ID Sbjct: 109 PGKIDKPEREVTIPQEPIKVTEACVGCSECVPVCPVDAISIEDELAV-----------ID 157 Query: 100 MIKCIYCGLCQEACPVDAIV 119 KCIYC +C + CP +AI Sbjct: 158 TEKCIYCSVCAQTCPWNAIY 177 Score = 38.2 bits (87), Expect = 0.35, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 11/69 (15%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C C C + CP A+ +G + KCI CG C ACP Sbjct: 31 FKTCTLCFSCASACPTGALVENNGKLI-----------YNSSKCIKCGNCATACPTGIKK 79 Query: 120 EGPNFEFAT 128 F ++ Sbjct: 80 VDDRFPYSK 88 Score = 37.8 bits (86), Expect = 0.53, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 3/82 (3%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID-MIKCIYCGLCQEACP 114 +P + C+ C+ C CP I+I + + I C+ C C CP Sbjct: 84 FPYSKGHCVLCEKCVDACPIDIISIPGKIDKPEREVTIPQEPIKVTEACVGCSECVPVCP 143 Query: 115 VDAIVEGPNFEFATETRQELYY 136 VDAI E A ++ Y Sbjct: 144 VDAISIED--ELAVIDTEKCIY 163 Score = 33.5 bits (75), Expect = 8.7, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 12/61 (19%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 +CI C C CP + R+ C+ C C +ACP+D Sbjct: 58 YNSSKCIKCGNCATACPTGIK------------KVDDRFPYSKGHCVLCEKCVDACPIDI 105 Query: 118 I 118 I Sbjct: 106 I 106 >gi|51596492|ref|YP_070683.1| electron transport complex protein RnfB [Yersinia pseudotuberculosis IP 32953] gi|145598187|ref|YP_001162263.1| electron transport complex protein RnfB [Yersinia pestis Pestoides F] gi|153949540|ref|YP_001400870.1| electron transport complex protein RnfB [Yersinia pseudotuberculosis IP 31758] gi|170024242|ref|YP_001720747.1| electron transport complex protein RnfB [Yersinia pseudotuberculosis YPIII] gi|186895542|ref|YP_001872654.1| electron transport complex protein RnfB [Yersinia pseudotuberculosis PB1/+] gi|51589774|emb|CAH21404.1| putative iron-sulfur protein [Yersinia pseudotuberculosis IP 32953] gi|145209883|gb|ABP39290.1| iron-sulfur protein [Yersinia pestis Pestoides F] gi|152961035|gb|ABS48496.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia pseudotuberculosis IP 31758] gi|169750776|gb|ACA68294.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia pseudotuberculosis YPIII] gi|186698568|gb|ACC89197.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia pseudotuberculosis PB1/+] Length = 207 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 24/78 (30%), Gaps = 10/78 (12%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C C CP AI + + + C C LC CP D Sbjct: 111 FIDEANCIGCTKCIQACPVDAIIGAT----------RAMHTVLSDLCTGCDLCVAPCPTD 160 Query: 117 AIVEGPNFEFATETRQEL 134 I P + +L Sbjct: 161 CIEMIPVATTTANWKWDL 178 >gi|326573425|gb|EGE23393.1| RnfABCDGE type electron transport complex subunit B [Moraxella catarrhalis 101P30B1] Length = 275 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 28/100 (28%), Gaps = 12/100 (12%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 + T P + R + R E CI C C CP AI + Sbjct: 80 TIANILNKPTKPATPSQWQIDPQTNRPKEV--RAIIQEADCIGCTKCIPACPVDAIVGTA 137 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 I C C LC CPVD I P Sbjct: 138 KHMHS----------IITDLCTGCELCLAPCPVDCIDVIP 167 >gi|310829205|ref|YP_003961562.1| 4Fe-4S ferredoxin [Eubacterium limosum KIST612] gi|308740939|gb|ADO38599.1| 4Fe-4S ferredoxin [Eubacterium limosum KIST612] Length = 133 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 10/61 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++RC+ C C A C A+ ++ KC+ C LC +ACPV AI Sbjct: 80 DKDRCVDCGACTAACVVGALDMDEN----------WLLTYHPEKCLECALCIKACPVRAI 129 Query: 119 V 119 Sbjct: 130 H 130 >gi|304397719|ref|ZP_07379596.1| electron transport complex, RnfABCDGE type, B subunit [Pantoea sp. aB] gi|304354891|gb|EFM19261.1| electron transport complex, RnfABCDGE type, B subunit [Pantoea sp. aB] Length = 192 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 22/74 (29%), Gaps = 10/74 (13%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 E E CI C C CP AI + + + C C L Sbjct: 103 KEPVRTVAFIDEANCIGCTKCIQACPVDAIVGAT----------RAMHTVLSDVCTGCDL 152 Query: 109 CQEACPVDAIVEGP 122 C CP D I P Sbjct: 153 CVAPCPTDCIEMRP 166 >gi|302340162|ref|YP_003805368.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Spirochaeta smaragdinae DSM 11293] gi|301637347|gb|ADK82774.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Spirochaeta smaragdinae DSM 11293] Length = 595 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 38/94 (40%), Gaps = 14/94 (14%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 ++F+ + + ++ L Y ++CI C +C CP AI E Sbjct: 514 HYFEDEYKAHIKDKRCPAGKCKP----LISYHILADKCIGCGVCARKCPVHAINGE---- 565 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 R ++ID CI CG C +AC DA+ Sbjct: 566 ------RRQLHEIDHDICIKCGECYKACKFDAVY 593 >gi|326202424|ref|ZP_08192293.1| hydrogenase, Fe-only [Clostridium papyrosolvens DSM 2782] gi|325987542|gb|EGD48369.1| hydrogenase, Fe-only [Clostridium papyrosolvens DSM 2782] Length = 592 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 34/85 (40%), Gaps = 7/85 (8%) Query: 59 GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDM--IKCIYCGLCQEACPV 115 +CI C+ CE C Q I SG + +I M C YCG C + CP Sbjct: 161 DANKCIYCRRCETACNKVQTCGILSGIGRGFNSFVGPFANIPMVESSCTYCGQCVQVCPT 220 Query: 116 DAIVEGPNFEFATETRQELYYDKER 140 A+ E + T+ E D ++ Sbjct: 221 AALTEV----YHTDKVWEAISDPDK 241 >gi|255526810|ref|ZP_05393709.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7] gi|296186424|ref|ZP_06854827.1| protein HymB [Clostridium carboxidivorans P7] gi|255509489|gb|EET85830.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7] gi|296048871|gb|EFG88302.1| protein HymB [Clostridium carboxidivorans P7] Length = 631 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 10/62 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 ++CI C C CP I + + ID KCI CG C CPVD Sbjct: 577 YEITDKCIGCTKCLRNCPVNCING----------KVKQVHTIDQSKCIKCGACCSGCPVD 626 Query: 117 AI 118 AI Sbjct: 627 AI 628 Score = 34.3 bits (77), Expect = 5.2, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 14/40 (35%) Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 C G + + KCI C C CPV+ I Sbjct: 560 HVKEKSCPAGVCKNLLKYEITDKCIGCTKCLRNCPVNCIN 599 >gi|118575489|ref|YP_875232.1| hypothetical protein CENSYa_0289 [Cenarchaeum symbiosum A] gi|118194010|gb|ABK76928.1| hypothetical protein CENSYa_0289 [Cenarchaeum symbiosum A] Length = 99 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 1/70 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 GE+ CI C LC IC + G +R + +CI G C CP AI Sbjct: 10 GEQMCIGCALCVEICTTLGPDVLRVKPVE-GWKRGKAFVFYPERCIADGACIGVCPTKAI 68 Query: 119 VEGPNFEFAT 128 +F Sbjct: 69 FWMRPMDFTV 78 >gi|73920212|sp|P00219|FER_SULAC RecName: Full=Zinc-containing ferredoxin Length = 103 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 2/64 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CIA C CP P ++ ++ CI+C C CPV AI Sbjct: 41 DFDLCIADGSCITACPVNVFQWYETPGHPASEKKADP--VNEQACIFCMACVNVCPVAAI 98 Query: 119 VEGP 122 P Sbjct: 99 DVKP 102 >gi|17545725|ref|NP_519127.1| ferredoxin [Ralstonia solanacearum GMI1000] gi|17428019|emb|CAD14708.1| probable ferredoxin [4fe-4s] protein [Ralstonia solanacearum GMI1000] Length = 268 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 23/64 (35%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ERCI C LC CP AI + + C C LC CPVD I Sbjct: 86 DPERCIGCTLCIQACPVDAIVGAPK----------AMHVVLEDWCTGCDLCVAPCPVDCI 135 Query: 119 VEGP 122 P Sbjct: 136 DMVP 139 Score = 39.3 bits (90), Expect = 0.16, Method: Composition-based stats. Identities = 14/21 (66%), Positives = 16/21 (76%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID +CI C LC +ACPVDAI Sbjct: 85 IDPERCIGCTLCIQACPVDAI 105 >gi|353337|prf||1103241A ferredoxin Length = 103 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 2/64 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CIA C CP P ++ ++ CI+C C CPV AI Sbjct: 41 DFDLCIADGSCITACPVNVFQWYETPGHPASEKKADP--VNQQACIFCMACVNVCPVAAI 98 Query: 119 VEGP 122 P Sbjct: 99 DVKP 102 >gi|147669597|ref|YP_001214415.1| glutamate synthase (NADPH) GltB2 subunit [Dehalococcoides sp. BAV1] gi|146270545|gb|ABQ17537.1| glutamate synthase (NADPH) GltB2 subunit [Dehalococcoides sp. BAV1] Length = 500 Score = 47.0 bits (110), Expect = 8e-04, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 12/89 (13%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 +RCI CK+C C ++ + + C+ C C CP A+V Sbjct: 16 DRCIKCKVCITQCSFDTHYYDADDD---------QIKVRNQNCVGCHRCVTFCPTGALVV 66 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWE 149 N E RQ + E + + + E Sbjct: 67 RNN---PLEYRQNANWTPEMIEDIFKQAE 92 >gi|319776070|ref|YP_004138558.1| Electron transport complex protein RnfB [Haemophilus influenzae F3047] gi|301170439|emb|CBW30046.1| predicted iron-sulfur protein [Haemophilus influenzae 10810] gi|317450661|emb|CBY86881.1| Electron transport complex protein RnfB [Haemophilus influenzae F3047] Length = 193 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 22/66 (33%), Gaps = 10/66 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C C CP AI + + I C C LC CP D Sbjct: 104 FIDENMCIGCTKCIQACPVDAIIGTNK----------AMHTIIPDLCTGCELCVAPCPTD 153 Query: 117 AIVEGP 122 I+ P Sbjct: 154 CILMIP 159 >gi|298374891|ref|ZP_06984848.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides sp. 3_1_19] gi|298267391|gb|EFI09047.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides sp. 3_1_19] Length = 1183 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 27/82 (32%), Gaps = 16/82 (19%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG A N CI C C +CP A + + Sbjct: 676 RGVAAFVPVWNE-ANCIQCNQCAYVCPHASIRPFVLNDEEQKGASFAMLDVKAPAAMKGM 734 Query: 94 V-RYDIDMIKCIYCGLCQEACP 114 R +D++ C+ CG C + CP Sbjct: 735 KFRMQVDVLDCLGCGNCADICP 756 >gi|296132680|ref|YP_003639927.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Thermincola sp. JR] gi|296031258|gb|ADG82026.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Thermincola potens JR] Length = 560 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 2/67 (2%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + +C+ C C CP +AITI + ++ + C CG+C C Sbjct: 479 MQPYVDASKCVVCLTCYRCCPHKAITIAYDRQ--FNNLYRSAAQVNPLACRRCGICAAEC 536 Query: 114 PVDAIVE 120 P AI Sbjct: 537 PAKAIHL 543 >gi|262384460|ref|ZP_06077594.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides sp. 2_1_33B] gi|262293753|gb|EEY81687.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides sp. 2_1_33B] Length = 1183 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 27/82 (32%), Gaps = 16/82 (19%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG A N CI C C +CP A + + Sbjct: 676 RGVAAFVPVWNE-ANCIQCNQCAYVCPHASIRPFVLNDEEQKGASFAMLDVKAPAAMKGM 734 Query: 94 V-RYDIDMIKCIYCGLCQEACP 114 R +D++ C+ CG C + CP Sbjct: 735 KFRMQVDVLDCLGCGNCADICP 756 >gi|225568913|ref|ZP_03777938.1| hypothetical protein CLOHYLEM_04992 [Clostridium hylemonae DSM 15053] gi|225162412|gb|EEG75031.1| hypothetical protein CLOHYLEM_04992 [Clostridium hylemonae DSM 15053] Length = 571 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 11/73 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 +R + C C C C +AI++++ I CI CG C E Sbjct: 1 MRVIDFKDASCRHCYKCVRNCEVKAISVQNEQAH-----------IMKDHCINCGHCLEV 49 Query: 113 CPVDAIVEGPNFE 125 CP +A + E Sbjct: 50 CPQNAKTFASDME 62 >gi|219852827|ref|YP_002467259.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanosphaerula palustris E1-9c] gi|219547086|gb|ACL17536.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanosphaerula palustris E1-9c] Length = 88 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 6/70 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIE------SGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 E C C C CP A+ + + +++ DI C CG+C Sbjct: 6 HINLEHCTGCNNCVVACPVGALELHTVDPVTNEKIYLVKNGKSIVIDIKSELCAGCGVCV 65 Query: 111 EACPVDAIVE 120 EACP D I Sbjct: 66 EACPHDVIRL 75 >gi|206896460|ref|YP_002247481.1| indolepyruvate oxidoreductase subunit IorA (IOR)(Indolepyruvate ferredoxin oxidoreductase subunit alpha) [Coprothermobacter proteolyticus DSM 5265] gi|206739077|gb|ACI18155.1| indolepyruvate oxidoreductase subunit IorA (IOR)(Indolepyruvate ferredoxin oxidoreductase subunit alpha) [Coprothermobacter proteolyticus DSM 5265] Length = 638 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 15/82 (18%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 Y EE+C C++C + A+ + + + ID C C C + CP Sbjct: 555 YAVEEEKCTGCRVCVNLLGCPALVFDRDKK---------KVSIDEDLCAGCSACAQVCPY 605 Query: 116 DAIVEG-----PNFE-FATETR 131 +AI E NF+ + E+R Sbjct: 606 NAIYEKSIEGEKNFDVVSDESR 627 >gi|150007812|ref|YP_001302555.1| dihydropyrimidine dehydrogenase [Parabacteroides distasonis ATCC 8503] gi|149936236|gb|ABR42933.1| oxidoreductase iron-sulfur protein [Parabacteroides distasonis ATCC 8503] Length = 497 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 21/80 (26%), Gaps = 7/80 (8%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 P + R C+ C C C + ID Sbjct: 425 PNIVPPEKLERTQIHRPTVDNSLCLGCGRCFVSCNDG-------GHQAIRFTSMRKPVID 477 Query: 100 MIKCIYCGLCQEACPVDAIV 119 KC+ C LC CP AI Sbjct: 478 EQKCVGCHLCALVCPTFAIH 497 >gi|146291447|ref|YP_001181871.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Shewanella putrefaciens CN-32] gi|145563137|gb|ABP74072.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella putrefaciens CN-32] Length = 553 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 29/82 (35%), Gaps = 9/82 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+C C C AICP ++ C+ CGLC+ ACP I Sbjct: 419 NVEKCTLCMSCVAICPTMSLQDGGDKPALH---------FIEQNCVQCGLCEAACPEKVI 469 Query: 119 VEGPNFEFATETRQELYYDKER 140 P F RQ+ KE Sbjct: 470 SLTPQINFDKAARQQQNTLKEE 491 Score = 38.9 bits (89), Expect = 0.23, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 11/53 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C CPA AI+ + +ID C G C ACP AI Sbjct: 195 CNRCLNFCPADAISSVAKK-----------IEIDPYLCHGAGSCTSACPTGAI 236 >gi|157158894|ref|YP_001463498.1| dihydropyrimidine dehydrogenase [Escherichia coli E24377A] gi|191165356|ref|ZP_03027198.1| dihydroorotate dehydrogenase family protein [Escherichia coli B7A] gi|218554712|ref|YP_002387625.1| dihydropyrimidine dehydrogenase [Escherichia coli IAI1] gi|300819162|ref|ZP_07099364.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 107-1] gi|300926249|ref|ZP_07142052.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 182-1] gi|301328626|ref|ZP_07221687.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 78-1] gi|331653576|ref|ZP_08354577.1| putative oxidoreductase [Escherichia coli M718] gi|157080924|gb|ABV20632.1| dihydroorotate dehydrogenase family protein [Escherichia coli E24377A] gi|190904519|gb|EDV64226.1| dihydroorotate dehydrogenase family protein [Escherichia coli B7A] gi|218361480|emb|CAQ99069.1| putative oxidoreductase subunit [Escherichia coli IAI1] gi|300417678|gb|EFK00989.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 182-1] gi|300528315|gb|EFK49377.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 107-1] gi|300845018|gb|EFK72778.1| dihydropyrimidine dehydrogenase [Escherichia coli MS 78-1] gi|320199742|gb|EFW74331.1| dihydropyrimidine dehydrogenase [Escherichia coli EC4100B] gi|331048425|gb|EGI20501.1| putative oxidoreductase [Escherichia coli M718] Length = 411 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 26/79 (32%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + ++C+ C C C G + + + +T + K Sbjct: 324 VPAEDLDRSYIVYPRINLDKCVGCGRCYISCYDG------GHQAMEWSEKTRTPHCNTEK 377 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 378 CVGCLLCGHVCPVGCIELG 396 >gi|333017993|gb|EGK37298.1| electron transport complex protein rnfC [Shigella flexneri K-304] Length = 601 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 39/112 (34%), Gaps = 13/112 (11%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CP + + G + ++ CI CG C CP Sbjct: 264 PQEEQSCIRCSACADACPVD-LLPQQLYWFSKGQQHDKATTHNIADCIECGACAWVCP-S 321 Query: 117 AIVEGPNF-----EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 I F E A ++E +R R+E+ R + + R Sbjct: 322 NIPLVQYFRQEKAEIAAIRQEE-----KRAAEAKARFEARQAR-LEREKATR 367 >gi|332797634|ref|YP_004459134.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Acidianus hospitalis W1] gi|332695369|gb|AEE94836.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidianus hospitalis W1] Length = 104 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 29/91 (31%), Gaps = 7/91 (7%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 + P+E + + CIA C CP P + Sbjct: 20 IKVYDPYEPPKKLGIWG-----TIVGVDFDLCIADGSCITACPVNVFQWYDTPGHPASEK 74 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + + I+ CI+C C CPV AI P Sbjct: 75 KAMP--INEQACIFCMACVNVCPVAAIDVKP 103 >gi|319937834|ref|ZP_08012236.1| pyruvate formate-lyase 2-activating enzyme [Coprobacillus sp. 29_1] gi|319807064|gb|EFW03680.1| pyruvate formate-lyase 2-activating enzyme [Coprobacillus sp. 29_1] Length = 298 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 11/67 (16%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 ++CI C+ C +CP A+T ++ R +D KC+ C C ACP DA Sbjct: 50 YDYDKCIHCQQCVHVCPHGALTHQNN-----------RILVDAKKCVGCLTCVHACPQDA 98 Query: 118 IVEGPNF 124 + + Sbjct: 99 LTHEGEY 105 >gi|317502719|ref|ZP_07960830.1| pyruvate-ferredoxin oxidoreductase [Prevotella salivae DSM 15606] gi|315666163|gb|EFV05719.1| pyruvate-ferredoxin oxidoreductase [Prevotella salivae DSM 15606] Length = 1175 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 34/114 (29%), Gaps = 20/114 (17%) Query: 28 FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH 87 F TI+ + G+ + RG A E CI C C CP I Sbjct: 637 FVKHGTIDGTWHNGTAAYEKRGVAAFVPVWK-AENCIQCNKCAYCCPHATIRPFVLDEKE 695 Query: 88 DGTRRTVRYDIDMIK---------------CIYCGLCQEACP----VDAIVEGP 122 DI K C+ CG C + CP A+V P Sbjct: 696 KAGFEDTTLDILAPKQLKGMQFRIQVDVLDCLGCGNCADVCPGKKGEKALVMTP 749 >gi|307292625|ref|ZP_07572471.1| formate dehydrogenase, alpha subunit [Sphingobium chlorophenolicum L-1] gi|306880691|gb|EFN11907.1| formate dehydrogenase, alpha subunit [Sphingobium chlorophenolicum L-1] Length = 948 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 3/81 (3%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T G + D +C+ CG C + Sbjct: 160 YFDFDPSKCIVCSRCVRACDEVQGTFALTIEGRGFDSKVSPSQGQDFLSSECVSCGACVQ 219 Query: 112 ACPVDAIVEGPNFEFATETRQ 132 ACP + E E T R Sbjct: 220 ACPTATLTEKKVVEIGTPDRS 240 >gi|302389267|ref|YP_003825088.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Thermosediminibacter oceani DSM 16646] gi|302199895|gb|ADL07465.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Thermosediminibacter oceani DSM 16646] Length = 597 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 30/96 (31%), Positives = 39/96 (40%), Gaps = 15/96 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 LRY F+ + + +K AL Y ++C C LC +CPA AIT E Sbjct: 514 TLRY-FRDEYEAHIREKKCPAGAC----KALITYEITVDKCKGCGLCVKVCPAGAITGE- 567 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 R + I+ KCI C C E C AI Sbjct: 568 ---------RKQPHAINREKCIKCNSCFERCRFGAI 594 >gi|293390124|ref|ZP_06634458.1| electron transport complex protein RnfB [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950658|gb|EFE00777.1| electron transport complex protein RnfB [Aggregatibacter actinomycetemcomitans D7S-1] Length = 196 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 19/64 (29%), Gaps = 10/64 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C C CP AI + + I C C LC CP Sbjct: 107 FIDENMCIGCTKCIQACPVDAIIGTNK----------SMHTIIPDLCTGCELCVAPCPTS 156 Query: 117 AIVE 120 I Sbjct: 157 CISM 160 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 13/25 (52%), Positives = 15/25 (60%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 ID CI C C +ACPVDAI+ Sbjct: 108 IDENMCIGCTKCIQACPVDAIIGTN 132 >gi|256840078|ref|ZP_05545587.1| oxidoreductase iron-sulfur protein [Parabacteroides sp. D13] gi|256739008|gb|EEU52333.1| oxidoreductase iron-sulfur protein [Parabacteroides sp. D13] Length = 497 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 21/80 (26%), Gaps = 7/80 (8%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 P + R C+ C C C + ID Sbjct: 425 PNIVPPEKLERTQIHRPTVDNSLCLGCGRCFVSCNDG-------GHQAIRFTSMRKPVID 477 Query: 100 MIKCIYCGLCQEACPVDAIV 119 KC+ C LC CP AI Sbjct: 478 EQKCVGCHLCALVCPTFAIH 497 >gi|256839310|ref|ZP_05544819.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Parabacteroides sp. D13] gi|256738240|gb|EEU51565.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Parabacteroides sp. D13] Length = 1182 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 27/82 (32%), Gaps = 16/82 (19%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG A N CI C C +CP A + + Sbjct: 676 RGVAAFVPVWNE-ANCIQCNQCAYVCPHASIRPFVLNDEEQKGASFAMLDVKAPAAMKGM 734 Query: 94 V-RYDIDMIKCIYCGLCQEACP 114 R +D++ C+ CG C + CP Sbjct: 735 KFRMQVDVLDCLGCGNCADICP 756 >gi|85860696|ref|YP_462898.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus aciditrophicus SB] gi|85723787|gb|ABC78730.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus aciditrophicus SB] Length = 642 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 27/64 (42%), Gaps = 10/64 (15%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 AL Y E+C AC+LC CPA AI + ID KC CG C Sbjct: 557 KALIAYVIDPEQCRACQLCVKKCPAGAIDGGKD----------LISVIDQEKCTKCGTCF 606 Query: 111 EACP 114 E CP Sbjct: 607 EVCP 610 Score = 35.8 bits (81), Expect = 1.7, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 18/45 (40%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 I + + Y ID +C C LC + CP AI G + Sbjct: 545 HIREKRCPALFCKALIAYVIDPEQCRACQLCVKKCPAGAIDGGKD 589 >gi|27366362|ref|NP_761890.1| electron transport complex protein RnfB [Vibrio vulnificus CMCP6] gi|37679375|ref|NP_933984.1| electron transport complex protein RnfB [Vibrio vulnificus YJ016] gi|320156873|ref|YP_004189252.1| electron transport complex protein RnfB [Vibrio vulnificus MO6-24/O] gi|33301651|sp|Q8D889|RNFB_VIBVU RecName: Full=Electron transport complex protein rnfB gi|71153697|sp|Q7MM82|RNFB_VIBVY RecName: Full=Electron transport complex protein rnfB gi|27362563|gb|AAO11417.1| Electron transport complex protein rnfB [Vibrio vulnificus CMCP6] gi|37198118|dbj|BAC93955.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Vibrio vulnificus YJ016] gi|319932185|gb|ADV87049.1| electron transport complex protein RnfB [Vibrio vulnificus MO6-24/O] Length = 198 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 29/87 (33%), Gaps = 11/87 (12%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103 S + E+ CI C C CP AI + + + +C Sbjct: 95 SAHDLEGKVKKVAFIHEDMCIGCTKCIQACPVDAIVGGTK----------ALHTVIKDEC 144 Query: 104 IYCGLCQEACPVDAIVEGPNFEFATET 130 C LC CP D I P E TET Sbjct: 145 TGCDLCVAPCPTDCIEMIP-LETTTET 170 >gi|325294615|ref|YP_004281129.1| NADH dehydrogenase (quinone) [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065063|gb|ADY73070.1| NADH dehydrogenase (quinone) [Desulfurobacterium thermolithotrophum DSM 11699] Length = 639 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 10/66 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L +Y +E C C +C CP AI E R + ID CI CG C E Sbjct: 573 LIQYVIIQEACKGCTVCALKCPVNAIYGE----------RKKPHVIDQSACIKCGACLEV 622 Query: 113 CPVDAI 118 C DA+ Sbjct: 623 CKFDAV 628 Score = 35.8 bits (81), Expect = 1.7, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 18/50 (36%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 E + + + ++Y I C C +C CPV+AI Sbjct: 550 EYFYEEYIEHVVNKRCPGKVCKDLIQYVIIQEACKGCTVCALKCPVNAIY 599 >gi|319940750|ref|ZP_08015091.1| hydrogenase [Sutterella wadsworthensis 3_1_45B] gi|319805810|gb|EFW02584.1| hydrogenase [Sutterella wadsworthensis 3_1_45B] Length = 456 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 33/100 (33%), Gaps = 18/100 (18%) Query: 27 FFKAKTTINY--PFEKGS------TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78 FK TI+ P E R ++ C+ C C CP AI Sbjct: 1 MFKDTMTIHTFGPGENAYGQNGGAYEGNLRKGELRGIIHINKDHCVGCDTCRKFCPTDAI 60 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 G + I C+YCG C ACP +AI Sbjct: 61 KGGLGAKHE----------IIDDACLYCGQCLVACPFNAI 90 >gi|301309080|ref|ZP_07215024.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides sp. 20_3] gi|300832762|gb|EFK63388.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides sp. 20_3] Length = 1183 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 27/82 (32%), Gaps = 16/82 (19%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG A N CI C C +CP A + + Sbjct: 676 RGVAAFVPVWNE-ANCIQCNQCAYVCPHASIRPFVLNDEEQKGASFAMLDVKAPAAMKGM 734 Query: 94 V-RYDIDMIKCIYCGLCQEACP 114 R +D++ C+ CG C + CP Sbjct: 735 KFRMQVDVLDCLGCGNCADICP 756 >gi|301310152|ref|ZP_07216091.1| dihydroorotate dehydrogenase family protein [Bacteroides sp. 20_3] gi|300831726|gb|EFK62357.1| dihydroorotate dehydrogenase family protein [Bacteroides sp. 20_3] Length = 497 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 21/80 (26%), Gaps = 7/80 (8%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 P + R C+ C C C + ID Sbjct: 425 PNIVPPEKLERTQIHRPTVDNSLCLGCGRCFVSCNDG-------GHQAIRFTSMRKPVID 477 Query: 100 MIKCIYCGLCQEACPVDAIV 119 KC+ C LC CP AI Sbjct: 478 EQKCVGCHLCALVCPTFAIH 497 >gi|262381679|ref|ZP_06074817.1| oxidoreductase iron-sulfur protein [Bacteroides sp. 2_1_33B] gi|262296856|gb|EEY84786.1| oxidoreductase iron-sulfur protein [Bacteroides sp. 2_1_33B] Length = 497 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 21/80 (26%), Gaps = 7/80 (8%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 P + R C+ C C C + ID Sbjct: 425 PNIVPPEKLERTQIHRPTVDNSLCLGCGRCFVSCNDG-------GHQAIRFTSMRKPVID 477 Query: 100 MIKCIYCGLCQEACPVDAIV 119 KC+ C LC CP AI Sbjct: 478 EQKCVGCHLCALVCPTFAIH 497 >gi|255525710|ref|ZP_05392642.1| molybdopterin oxidoreductase [Clostridium carboxidivorans P7] gi|296184814|ref|ZP_06853225.1| pyridine nucleotide-disulfide oxidoreductase [Clostridium carboxidivorans P7] gi|255510612|gb|EET86920.1| molybdopterin oxidoreductase [Clostridium carboxidivorans P7] gi|296050596|gb|EFG90019.1| pyridine nucleotide-disulfide oxidoreductase [Clostridium carboxidivorans P7] Length = 1197 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 3/65 (4%) Query: 59 GEERCIACKLCEAICPAQA-ITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115 ++CI C C C IT + ++ +++ + + CI CG C + CP Sbjct: 607 NPDKCILCGQCVRACEEFIGITAIGLEKRGFDSKVIPEFNLPLEESSCISCGQCVDVCPT 666 Query: 116 DAIVE 120 A +E Sbjct: 667 GACME 671 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 23/82 (28%), Gaps = 14/82 (17%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAI----------CPAQAITIESGPRCHDGTR 91 S F E ALR RC+ C + I + Sbjct: 544 PISETFTEEAALR----EASRCLECGCHDYFECKLVNYIEDYNVDTKKISGEKHKRKEEQ 599 Query: 92 RTVRYDIDMIKCIYCGLCQEAC 113 + + KCI CG C AC Sbjct: 600 NHPFIERNPDKCILCGQCVRAC 621 >gi|255015651|ref|ZP_05287777.1| putative pyruvate-flavodoxin oxidoreductase [Bacteroides sp. 2_1_7] Length = 1183 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 27/82 (32%), Gaps = 16/82 (19%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG A N CI C C +CP A + + Sbjct: 676 RGVAAFVPVWNE-ANCIQCNQCAYVCPHASIRPFVLNDEEQKGASFAMLDVKAPAAMKGM 734 Query: 94 V-RYDIDMIKCIYCGLCQEACP 114 R +D++ C+ CG C + CP Sbjct: 735 KFRMQVDVLDCLGCGNCADICP 756 >gi|207743646|ref|YP_002260038.1| ferredoxin [4fe-4s] protein [Ralstonia solanacearum IPO1609] gi|206595045|emb|CAQ61972.1| ferredoxin [4fe-4s] protein [Ralstonia solanacearum IPO1609] Length = 265 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 22/64 (34%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C LC CP AI + + C C LC CPVD I Sbjct: 83 DPEHCIGCTLCIQACPVDAIVGAPK----------AMHVVLADWCTGCDLCVAPCPVDCI 132 Query: 119 VEGP 122 P Sbjct: 133 DMVP 136 Score = 38.5 bits (88), Expect = 0.27, Method: Composition-based stats. Identities = 14/21 (66%), Positives = 15/21 (71%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C LC +ACPVDAI Sbjct: 82 IDPEHCIGCTLCIQACPVDAI 102 >gi|78485379|ref|YP_391304.1| electron transport complex, RnfABCDGE type, B subunit [Thiomicrospira crunogena XCL-2] gi|78363665|gb|ABB41630.1| NADH oxidoreductase, RnfABCDGE type, B subunit [Thiomicrospira crunogena XCL-2] Length = 190 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 28/92 (30%), Gaps = 13/92 (14%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T P E + + + + CI C C CP AI + Sbjct: 85 ITHREPKEMEAEPEDIAQKIVAKIDED---ICIGCVHCIKACPVDAILGATKM------- 134 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + + +C C C CPVD I P Sbjct: 135 ---MHTVIESECTGCEKCIPVCPVDCIDMIPQ 163 >gi|270308168|ref|YP_003330226.1| hydrogenase subunit, NADH dehydrogenase subunit E subfamily [Dehalococcoides sp. VS] gi|270154060|gb|ACZ61898.1| hydrogenase subunit, NADH dehydrogenase subunit E subfamily [Dehalococcoides sp. VS] Length = 641 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 10/64 (15%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 AL + E+C AC +C CP AI G + + I+ KCI CG C Sbjct: 558 KALLTFYIDPEKCKACMICARNCPTDAIKGGKG----------LIHTIEQDKCIKCGACL 607 Query: 111 EACP 114 + CP Sbjct: 608 DTCP 611 Score = 37.4 bits (85), Expect = 0.76, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 20/53 (37%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + I++ + + + ID KC C +C CP DAI G Sbjct: 537 KYFRHEYIDHIKNKHCEAGVCKALLTFYIDPEKCKACMICARNCPTDAIKGGK 589 >gi|298528242|ref|ZP_07015646.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans ASO3-1] gi|298511894|gb|EFI35796.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans ASO3-1] Length = 593 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 15/96 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 +RY F+ + I+ K +L + EE C C +C+ +CPA AI Sbjct: 510 TVRY-FRDEYNIHIRDRKCPALVC----KSLLTFSCIEETCTGCGMCKRVCPADAIR--- 561 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 GTR+ + ID C+ CG C ++C AI Sbjct: 562 ------GTRKKPHF-IDQELCVKCGSCFDSCKFGAI 590 Score = 38.5 bits (88), Expect = 0.34, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 16/53 (30%) Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 I I + + + C CG+C+ CP DAI Sbjct: 511 VRYFRDEYNIHIRDRKCPALVCKSLLTFSCIEETCTGCGMCKRVCPADAIRGT 563 >gi|126739780|ref|ZP_01755471.1| iron-sulfur cluster-binding protein [Roseobacter sp. SK209-2-6] gi|126719012|gb|EBA15723.1| iron-sulfur cluster-binding protein [Roseobacter sp. SK209-2-6] Length = 653 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 31/103 (30%), Gaps = 13/103 (12%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 ++ L E C C C ++CP+ A+ + Sbjct: 484 DQQLPLPQGAPYGAVLI----DTESCTLCLSCASLCPSGALGDNPD---------LPQLR 530 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140 C+ CG+C CP AI P ++ + +E Sbjct: 531 FQEDACLQCGICANLCPEQAIKLEPRLNLGSDALSQKVLHEEE 573 Score = 38.9 bits (89), Expect = 0.20, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 16/64 (25%), Gaps = 4/64 (6%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 N C A + + ID + C CG C CP Sbjct: 260 YLKNDPVLC----AHSRASQAGCSKCLDHCPTSAISPKGDHVTIDPMICAGCGACASLCP 315 Query: 115 VDAI 118 AI Sbjct: 316 SGAI 319 >gi|118594443|ref|ZP_01551790.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Methylophilales bacterium HTCC2181] gi|118440221|gb|EAV46848.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Methylophilales bacterium HTCC2181] Length = 510 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 33/107 (30%), Gaps = 11/107 (10%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + N CI C C CP + + + + ++ CI CG C Sbjct: 357 PEMIENNNPVLPCIRCAKCAEACPVN-LQPQELFWFSQSNQFEKAENYNLFDCIECGCCS 415 Query: 111 EACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIV 157 CP I + +A Y KE E++I R Sbjct: 416 YVCP-SNIPLVQYYRYAKSEIISDRYAKE---------EADIARERN 452 >gi|117617460|ref|YP_857144.1| electron transport complex protein RnfB [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|166225078|sp|A0KLJ3|RNFB_AERHH RecName: Full=Electron transport complex protein rnfB gi|117558867|gb|ABK35815.1| electron transport complex, RnfABCDGE type, B subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 187 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 27/84 (32%), Gaps = 10/84 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E + E++CI C C CP AI + + + Sbjct: 91 EPQPLGGAEAAAPIKKVAFIHEDQCIGCTKCIQACPVDAIVGATK----------AMHTV 140 Query: 99 DMIKCIYCGLCQEACPVDAIVEGP 122 +C C LC + CP D I P Sbjct: 141 IADECTGCDLCVDPCPTDCIEMIP 164 >gi|326203111|ref|ZP_08192977.1| LOW QUALITY PROTEIN: cobyrinic acid ac-diamide synthase [Clostridium papyrosolvens DSM 2782] gi|325986757|gb|EGD47587.1| LOW QUALITY PROTEIN: cobyrinic acid ac-diamide synthase [Clostridium papyrosolvens DSM 2782] Length = 287 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 15/77 (19%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 P + ++ +CI C LCE C AI +++ + +C Sbjct: 51 PVINDFYGFQKAFIDNSKCINCGLCEENCHFGAIRN---------------FEVSVYECE 95 Query: 105 YCGLCQEACPVDAIVEG 121 CG+C E CP +A+ Sbjct: 96 GCGVCCEICPQNAVSMT 112 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 10/74 (13%) Query: 63 CIACKLCEAI--CPAQAI-----TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 I C++ C A E+ + + ID KCI CGLC+E C Sbjct: 22 FIKLSNCKSFADCDVDAPNLHLVMSENMEPVINDFYGFQKAFIDNSKCINCGLCEENCHF 81 Query: 116 DAIVEGPNFEFATE 129 AI NFE + Sbjct: 82 GAIR---NFEVSVY 92 >gi|312879272|ref|ZP_07739072.1| ferredoxin [Aminomonas paucivorans DSM 12260] gi|310782563|gb|EFQ22961.1| ferredoxin [Aminomonas paucivorans DSM 12260] Length = 248 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 20/65 (30%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 R P E CI C C C + + ++ C+ C C E C Sbjct: 117 RLSPYDGELCIRCGRCVRACALDGTDALGFALRGWDRKVSPPFEEAPESCVGCLACAEVC 176 Query: 114 PVDAI 118 P I Sbjct: 177 PTGHI 181 >gi|308272797|emb|CBX29401.1| hypothetical protein N47_J03820 [uncultured Desulfobacterium sp.] Length = 338 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 10/100 (10%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT--RRTVRYDIDMI 101 + L + + +C+ C C A CP +AI R ID Sbjct: 48 PECINFQEELFHHAD---KCVRCGTCVAACPEKAIAPPGKRTEKCTEDLRDVKPPIIDRS 104 Query: 102 KCIYCGLCQEACPVDAIV-----EGPNFEFATETRQELYY 136 KC C C + CP +AI + F+ +++Y Sbjct: 105 KCTLCMKCVDVCPQNAITRVSSVMTLDEAFSEIKSDDVFY 144 >gi|302344258|ref|YP_003808787.1| ferredoxin [Desulfarculus baarsii DSM 2075] gi|301640871|gb|ADK86193.1| ferredoxin [Desulfarculus baarsii DSM 2075] Length = 255 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 26/98 (26%) Query: 25 RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84 R P + R+ ++ C+ C LC +C + Sbjct: 85 RKMLVELILSRCPENAFVRDLAAQYGLERPRFQCDQDNCLLCGLCCRVCELMGPRAITFA 144 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 T + C+ CG C CP IV Sbjct: 145 GRGTEIEVTTPFHCVSDDCLACGACAAVCPTGNIVMED 182 >gi|257066615|ref|YP_003152871.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Anaerococcus prevotii DSM 20548] gi|256798495|gb|ACV29150.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Anaerococcus prevotii DSM 20548] Length = 57 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 11/65 (16%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 Y E CI+C CE CP AI+ Y+ID CI CG C C Sbjct: 1 MAYRIDENTCISCGSCEGECPVGAISQGDAA-----------YEIDADACIDCGSCAAVC 49 Query: 114 PVDAI 118 PV+AI Sbjct: 50 PVEAI 54 Score = 34.3 bits (77), Expect = 5.8, Method: Composition-based stats. Identities = 14/27 (51%), Positives = 16/27 (59%) Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGP 122 Y ID CI CG C+ CPV AI +G Sbjct: 3 YRIDENTCISCGSCEGECPVGAISQGD 29 >gi|257791889|ref|YP_003182495.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Eggerthella lenta DSM 2243] gi|257475786|gb|ACV56106.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Eggerthella lenta DSM 2243] Length = 1180 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 28/99 (28%), Gaps = 17/99 (17%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 FE+G+ + RG CI C C CP I + Sbjct: 673 FEQGAAAYEKRGVAVSVPAW-DAATCIQCNQCAFACPHATIRPFALTEEEAAAAPAATVM 731 Query: 98 ----------------IDMIKCIYCGLCQEACPVDAIVE 120 I C+ CG+C CP D++ Sbjct: 732 VPAKGKAAAGLQYTLAISPFDCMGCGVCVNVCPSDSLAM 770 >gi|258405160|ref|YP_003197902.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfohalobium retbaense DSM 5692] gi|257797387|gb|ACV68324.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfohalobium retbaense DSM 5692] Length = 1218 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 21/112 (18%), Positives = 34/112 (30%), Gaps = 20/112 (17%) Query: 31 KTTINYPFEKGSTS--PRFRGEHALRRYPNGEERCIACKLCEAICPAQAI---------- 78 + P + + A+ + CI C C +CP AI Sbjct: 653 PVSAFEPDGTFPVATAQYEKRGVAINVPEWIADNCIQCNQCAFVCPHSAILPVLLTDEEK 712 Query: 79 ------TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP--VDAIVEGP 122 + D R ++ + C+ CG C + CP A+V P Sbjct: 713 EAAPESFNTIDAKGKDVKGLHFRIQVNTMDCLGCGNCADICPAKESALVMKP 764 >gi|89519313|gb|ABD75790.1| iron-sulfur cluster-binding protein [uncultured bacterium] Length = 380 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 12/78 (15%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 P FR +R E+CI C C CP Q I++ +I Sbjct: 304 VGPVFRNAFTVRP-QVVSEKCIGCGFCRDACPVQVISMVE-----------KHAEIKQRH 351 Query: 103 CIYCGLCQEACPVDAIVE 120 CI+C C E CP DAI Sbjct: 352 CIHCYCCHEMCPHDAIEL 369 Score = 41.2 bits (95), Expect = 0.042, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 16/31 (51%) Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 VR + KCI CG C++ACPV I Sbjct: 314 VRPQVVSEKCIGCGFCRDACPVQVISMVEKH 344 >gi|43863|emb|CAA31501.1| unnamed protein product [Klebsiella pneumoniae] Length = 1171 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 23/83 (27%), Gaps = 14/83 (16%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDG---------TR 91 + AL E C C C ICP AI E G Sbjct: 674 WEKRGIALEVPVWQPEGCTQCNQCAFICPHAAIRPALLNGEEHDAAPVGLLSKPAQGAKE 733 Query: 92 RTVRYDIDMIKCIYCGLCQEACP 114 I + C CG C + CP Sbjct: 734 YHYHLAISPLDCSGCGNCVDICP 756 >gi|68304986|gb|AAY89997.1| hypothetical protein blr6742 [uncultured bacterium BAC13K9BAC] Length = 546 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 33/117 (28%), Gaps = 18/117 (15%) Query: 24 LRYFFKAKTTINY------PFEKGSTSPRFRGEHALRRYPNGEERCIAC------KLC-- 69 L+ K T P K +S + + + C C C Sbjct: 422 LKDLPKRTFTAEVELGYNKPESKKESSRCYLCHYQFAINNDLCVLCDECLLVRPVHECIK 481 Query: 70 ----EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + I ++ + ID C+ CG C++ACP AI Sbjct: 482 ELSSKNIDDNGEVSFKKIEPGKSHGIYHGLLYIDPKVCVRCGECEKACPTGAISLTK 538 >gi|24374053|ref|NP_718096.1| electron transport complex protein RnfB [Shewanella oneidensis MR-1] gi|81744759|sp|Q8EE80|RNFB_SHEON RecName: Full=Electron transport complex protein rnfB gi|24348528|gb|AAN55540.1|AE015693_2 iron-sulfur cluster-binding protein [Shewanella oneidensis MR-1] Length = 193 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 25/72 (34%), Gaps = 10/72 (13%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + E+ CI C C CP AI + + + C C LC Sbjct: 102 QVKKVAYIREDECIGCTKCIQACPVDAIIGAGK----------LMHTVLTADCTGCDLCV 151 Query: 111 EACPVDAIVEGP 122 E CPVD I P Sbjct: 152 EPCPVDCIDMVP 163 >gi|128284|sp|P03833|NIFJ_KLEPN RecName: Full=Pyruvate-flavodoxin oxidoreductase gi|43821|emb|CAA31665.1| unnamed protein product [Klebsiella pneumoniae] Length = 1171 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 23/83 (27%), Gaps = 14/83 (16%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDG---------TR 91 + AL E C C C ICP AI E G Sbjct: 674 WEKRGIALEVPVWQPEGCTQCNQCAFICPHAAIRPALLNGEEHDAAPVGLLSKPAQGAKE 733 Query: 92 RTVRYDIDMIKCIYCGLCQEACP 114 I + C CG C + CP Sbjct: 734 YHYHLAISPLDCSGCGNCVDICP 756 >gi|15641031|ref|NP_230662.1| electron transport complex protein RnfB [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587394|ref|ZP_01677164.1| RnfB-related protein [Vibrio cholerae 2740-80] gi|121729983|ref|ZP_01682400.1| RnfB-related protein [Vibrio cholerae V52] gi|147674952|ref|YP_001216488.1| electron transport complex protein RnfB [Vibrio cholerae O395] gi|153215075|ref|ZP_01949792.1| RnfB-related protein [Vibrio cholerae 1587] gi|153800913|ref|ZP_01955499.1| RnfB-related protein [Vibrio cholerae MZO-3] gi|153819293|ref|ZP_01971960.1| RnfB-related protein [Vibrio cholerae NCTC 8457] gi|153823433|ref|ZP_01976100.1| RnfB-related protein [Vibrio cholerae B33] gi|153824911|ref|ZP_01977578.1| RnfB-related protein [Vibrio cholerae MZO-2] gi|153829521|ref|ZP_01982188.1| RnfB-related protein [Vibrio cholerae 623-39] gi|227081190|ref|YP_002809741.1| RnfB-related protein [Vibrio cholerae M66-2] gi|229505385|ref|ZP_04394895.1| electron transport complex protein RnfB [Vibrio cholerae BX 330286] gi|229510945|ref|ZP_04400424.1| electron transport complex protein RnfB [Vibrio cholerae B33] gi|229515402|ref|ZP_04404861.1| electron transport complex protein RnfB [Vibrio cholerae TMA 21] gi|229518066|ref|ZP_04407510.1| electron transport complex protein RnfB [Vibrio cholerae RC9] gi|229529891|ref|ZP_04419281.1| electron transport complex protein RnfB [Vibrio cholerae 12129(1)] gi|229608404|ref|YP_002879052.1| electron transport complex protein RnfB [Vibrio cholerae MJ-1236] gi|254291761|ref|ZP_04962547.1| RnfB-related protein [Vibrio cholerae AM-19226] gi|254848146|ref|ZP_05237496.1| electron transport complex protein rnfB [Vibrio cholerae MO10] gi|255745441|ref|ZP_05419389.1| electron transport complex protein RnfB [Vibrio cholera CIRS 101] gi|262151307|ref|ZP_06028442.1| electron transport complex protein RnfB [Vibrio cholerae INDRE 91/1] gi|262167227|ref|ZP_06034939.1| electron transport complex protein RnfB [Vibrio cholerae RC27] gi|262191541|ref|ZP_06049724.1| electron transport complex protein RnfB [Vibrio cholerae CT 5369-93] gi|298498871|ref|ZP_07008678.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|17369129|sp|Q9KT87|RNFB_VIBCH RecName: Full=Electron transport complex protein rnfB gi|172047411|sp|A5F2R3|RNFB_VIBC3 RecName: Full=Electron transport complex protein rnfB gi|254807927|sp|C3LTR4|RNFB_VIBCM RecName: Full=Electron transport complex protein rnfB gi|9655480|gb|AAF94177.1| RnfB-related protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548397|gb|EAX58459.1| RnfB-related protein [Vibrio cholerae 2740-80] gi|121628269|gb|EAX60782.1| RnfB-related protein [Vibrio cholerae V52] gi|124114938|gb|EAY33758.1| RnfB-related protein [Vibrio cholerae 1587] gi|124123504|gb|EAY42247.1| RnfB-related protein [Vibrio cholerae MZO-3] gi|126510153|gb|EAZ72747.1| RnfB-related protein [Vibrio cholerae NCTC 8457] gi|126519042|gb|EAZ76265.1| RnfB-related protein [Vibrio cholerae B33] gi|146316835|gb|ABQ21374.1| RnfB-related protein [Vibrio cholerae O395] gi|148874981|gb|EDL73116.1| RnfB-related protein [Vibrio cholerae 623-39] gi|149741423|gb|EDM55453.1| RnfB-related protein [Vibrio cholerae MZO-2] gi|150422354|gb|EDN14315.1| RnfB-related protein [Vibrio cholerae AM-19226] gi|227009078|gb|ACP05290.1| RnfB-related protein [Vibrio cholerae M66-2] gi|227012833|gb|ACP09043.1| RnfB-related protein [Vibrio cholerae O395] gi|229333665|gb|EEN99151.1| electron transport complex protein RnfB [Vibrio cholerae 12129(1)] gi|229344781|gb|EEO09755.1| electron transport complex protein RnfB [Vibrio cholerae RC9] gi|229347171|gb|EEO12131.1| electron transport complex protein RnfB [Vibrio cholerae TMA 21] gi|229350910|gb|EEO15851.1| electron transport complex protein RnfB [Vibrio cholerae B33] gi|229357608|gb|EEO22525.1| electron transport complex protein RnfB [Vibrio cholerae BX 330286] gi|229371059|gb|ACQ61482.1| electron transport complex protein RnfB [Vibrio cholerae MJ-1236] gi|254843851|gb|EET22265.1| electron transport complex protein rnfB [Vibrio cholerae MO10] gi|255736516|gb|EET91913.1| electron transport complex protein RnfB [Vibrio cholera CIRS 101] gi|262024371|gb|EEY43060.1| electron transport complex protein RnfB [Vibrio cholerae RC27] gi|262030923|gb|EEY49552.1| electron transport complex protein RnfB [Vibrio cholerae INDRE 91/1] gi|262032595|gb|EEY51150.1| electron transport complex protein RnfB [Vibrio cholerae CT 5369-93] gi|297543204|gb|EFH79254.1| conserved hypothetical protein [Vibrio cholerae MAK 757] gi|327483732|gb|AEA78139.1| Electron transport complex protein RnfB [Vibrio cholerae LMA3894-4] Length = 195 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 24/79 (30%), Gaps = 10/79 (12%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103 S E+ CI C C CP AI + + + +C Sbjct: 95 SAHDLDNKVKMVAFIHEDMCIGCTKCIQACPVDAIVGGNK----------AVHTVIKNEC 144 Query: 104 IYCGLCQEACPVDAIVEGP 122 C LC CP D I P Sbjct: 145 TGCDLCVAPCPTDCIEMIP 163 >gi|310828126|ref|YP_003960483.1| hypothetical protein ELI_2538 [Eubacterium limosum KIST612] gi|308739860|gb|ADO37520.1| hypothetical protein ELI_2538 [Eubacterium limosum KIST612] Length = 506 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110 +E+C+ C C CP +AI P + D I+ KC+ CG+C Sbjct: 145 HIDKEKCVRCGRCREACPYEAIVKYDRPCAAACGVDAIESDELGRAKINYDKCVSCGMCL 204 Query: 111 EACPVDAI 118 CP AI Sbjct: 205 VNCPFGAI 212 Score = 42.0 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 13/60 (21%) Query: 61 ERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C C ++CP A+ ++ G ID KC+ CG C+EACP +AI Sbjct: 118 DNCRGCLAHPCVSVCPVNAVYMKDGKSH-----------IDKEKCVRCGRCREACPYEAI 166 >gi|225874248|ref|YP_002755707.1| pyruvate ferrodoxin oxidoreductase [Acidobacterium capsulatum ATCC 51196] gi|225793282|gb|ACO33372.1| pyruvate ferrodoxin oxidoreductase [Acidobacterium capsulatum ATCC 51196] Length = 1217 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 32/118 (27%), Gaps = 24/118 (20%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ----------------AITIESG 83 +T+ + A EE CI C C +CP A + Sbjct: 676 PTATAKWEKRNIAQFIPVWDEELCIQCGKCVLVCPHAVIRAKVYDSALAADAPATFKHAT 735 Query: 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV--------DAIVEGPNFEFATETRQE 133 P+ + + C C LC E CP A+ P R+ Sbjct: 736 PKWRGMDNQLYSLQVAPEDCTGCTLCVEVCPAKSKADPSHKALNMQPQQPLRAAEREN 793 >gi|163748440|ref|ZP_02155694.1| formate dehydrogenase, alpha subunit [Shewanella benthica KT99] gi|161332018|gb|EDQ02695.1| formate dehydrogenase, alpha subunit [Shewanella benthica KT99] Length = 1434 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 22/75 (29%), Gaps = 15/75 (20%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---------------IDMIKC 103 RCI C C IC QA + ++ C Sbjct: 656 DANRCINCGACVDICQQQAGHHAISFAADNYQALPTEVTGQLSRRAPRAGFSASMNDSNC 715 Query: 104 IYCGLCQEACPVDAI 118 + CG C + CP A+ Sbjct: 716 VQCGGCVQVCPTGAL 730 >gi|154500042|ref|ZP_02038080.1| hypothetical protein BACCAP_03700 [Bacteroides capillosus ATCC 29799] gi|150271132|gb|EDM98401.1| hypothetical protein BACCAP_03700 [Bacteroides capillosus ATCC 29799] Length = 387 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 31/70 (44%), Gaps = 11/70 (15%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 AL P E C+ C +C A CP +AIT+ + R ID KCI C C E Sbjct: 319 ALSATPRVREACVGCGICAASCPVKAITV-----------KNRRARIDTGKCIRCYCCHE 367 Query: 112 ACPVDAIVEG 121 CP A+ Sbjct: 368 LCPHKAVELH 377 >gi|150019923|ref|YP_001305277.1| cobyrinic acid a,c-diamide synthase [Thermosipho melanesiensis BI429] gi|149792444|gb|ABR29892.1| Cobyrinic acid a,c-diamide synthase [Thermosipho melanesiensis BI429] Length = 290 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 15/83 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + +C C +C+ +C +AI ++ YD+D C C C ACP +AI Sbjct: 64 DQTKCDKCGICKKVCRFEAIGFKNEK-----------YDVDQFACEGCNACVIACPRNAI 112 Query: 119 V----EGPNFEFATETRQELYYD 137 + ++ T ++ Sbjct: 113 RLETALSGEYYYSVTTNEKEIIH 135 Score = 34.7 bits (78), Expect = 3.9, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 19/55 (34%) Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 C+ + + + ID KC CG+C++ C +AI Sbjct: 34 CDVDAANLNLMFSGEIKEKYDYYGGKKAVIDQTKCDKCGICKKVCRFEAIGFKNE 88 >gi|119505634|ref|ZP_01627705.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB [marine gamma proteobacterium HTCC2080] gi|119458577|gb|EAW39681.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB [marine gamma proteobacterium HTCC2080] Length = 200 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 29/84 (34%), Gaps = 10/84 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E + E E+ CI C C CP AI + + + + Sbjct: 97 EPQALDAEHGEEKEPNVAYIREDECIGCTKCIQACPVDAILGAAK----------LMHTV 146 Query: 99 DMIKCIYCGLCQEACPVDAIVEGP 122 +C C LC E CPVD I P Sbjct: 147 IADECTGCDLCVEPCPVDCIDMLP 170 >gi|67906754|gb|AAY82817.1| predicted iron-sulfur cluster-binding protein [uncultured bacterium MedeBAC46A06] Length = 672 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 22/70 (31%), Gaps = 9/70 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C C + CPA A+ C+ CG+C CP I Sbjct: 526 DTDNCTICLSCVSACPAGALQDNPDAPQLL---------FREDACLQCGICMATCPEKVI 576 Query: 119 VEGPNFEFAT 128 P F A Sbjct: 577 TLVPQFNLAD 586 Score = 35.1 bits (79), Expect = 3.1, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 11/52 (21%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 C C +CPA AI++ +ID C CG C CP A Sbjct: 293 CSRCLDVCPAGAISVAGD-----------TVEIDPAICGGCGYCGAVCPSGA 333 Score = 33.9 bits (76), Expect = 8.4, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 18/49 (36%) Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 A A + R DID C C C ACP A+ + P+ Sbjct: 502 AGAQKVGDTAIPLPEGAPYGRVDIDTDNCTICLSCVSACPAGALQDNPD 550 >gi|78224539|ref|YP_386286.1| NADH dehydrogenase I subunit G [Geobacter metallireducens GS-15] gi|78195794|gb|ABB33561.1| NADH dehydrogenase I, G subunit, putative [Geobacter metallireducens GS-15] Length = 828 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 21/64 (32%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RC+ C C IC + + C +CG C CPV A+ Sbjct: 143 DMNRCVHCGKCARICDEIVSFGAYTFINRGLEAKIGTEFDGPLNCEFCGSCVSVCPVGAL 202 Query: 119 VEGP 122 V P Sbjct: 203 VSRP 206 >gi|16273571|ref|NP_439826.1| electron transport complex protein RnfB [Haemophilus influenzae Rd KW20] gi|68250288|ref|YP_249400.1| electron transport complex protein RnfB [Haemophilus influenzae 86-028NP] gi|145629224|ref|ZP_01785023.1| electron transport complex protein RnfB [Haemophilus influenzae 22.1-21] gi|145631464|ref|ZP_01787233.1| electron transport complex protein RnfB [Haemophilus influenzae R3021] gi|145633618|ref|ZP_01789345.1| electron transport complex protein RnfB [Haemophilus influenzae 3655] gi|145635460|ref|ZP_01791161.1| electron transport complex protein RnfB [Haemophilus influenzae PittAA] gi|145639160|ref|ZP_01794767.1| electron transport complex protein RnfB [Haemophilus influenzae PittII] gi|148825772|ref|YP_001290525.1| electron transport complex protein RnfB [Haemophilus influenzae PittEE] gi|229845219|ref|ZP_04465352.1| electron transport complex protein RnfB [Haemophilus influenzae 6P18H1] gi|229847305|ref|ZP_04467407.1| electron transport complex protein RnfB [Haemophilus influenzae 7P49H1] gi|260581277|ref|ZP_05849095.1| iron-sulfur cluster binding protein [Haemophilus influenzae RdAW] gi|260582612|ref|ZP_05850401.1| electron transport complex protein RnfB [Haemophilus influenzae NT127] gi|319896879|ref|YP_004135074.1| electron transport complex protein rnfb [Haemophilus influenzae F3031] gi|329123233|ref|ZP_08251801.1| electron transport complex protein RnfB [Haemophilus aegyptius ATCC 11116] gi|6136672|sp|P71396|RNFB_HAEIN RecName: Full=Electron transport complex protein rnfB gi|81335291|sp|Q4QJQ7|RNFB_HAEI8 RecName: Full=Electron transport complex protein rnfB gi|166225084|sp|A5UBJ1|RNFB_HAEIE RecName: Full=Electron transport complex protein rnfB gi|1574536|gb|AAC23330.1| iron-sulfur cluster binding protein [Haemophilus influenzae Rd KW20] gi|68058487|gb|AAX88740.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Haemophilus influenzae 86-028NP] gi|144978727|gb|EDJ88450.1| electron transport complex protein RnfB [Haemophilus influenzae 22.1-21] gi|144982894|gb|EDJ90407.1| electron transport complex protein RnfB [Haemophilus influenzae R3021] gi|144985495|gb|EDJ92311.1| electron transport complex protein RnfB [Haemophilus influenzae 3655] gi|145267334|gb|EDK07337.1| electron transport complex protein RnfB [Haemophilus influenzae PittAA] gi|145271722|gb|EDK11632.1| electron transport complex protein RnfB [Haemophilus influenzae PittII] gi|148715932|gb|ABQ98142.1| electron transport complex protein RnfB [Haemophilus influenzae PittEE] gi|229809730|gb|EEP45454.1| electron transport complex protein RnfB [Haemophilus influenzae 7P49H1] gi|229811814|gb|EEP47510.1| electron transport complex protein RnfB [Haemophilus influenzae 6P18H1] gi|260092104|gb|EEW76049.1| iron-sulfur cluster binding protein [Haemophilus influenzae RdAW] gi|260094284|gb|EEW78183.1| electron transport complex protein RnfB [Haemophilus influenzae NT127] gi|309750740|gb|ADO80724.1| Electron transport complex protein RnfB [Haemophilus influenzae R2866] gi|309972920|gb|ADO96121.1| Electron transport complex protein RnfB [Haemophilus influenzae R2846] gi|317432383|emb|CBY80738.1| Electron transport complex protein RnfB [Haemophilus influenzae F3031] gi|327471442|gb|EGF16890.1| electron transport complex protein RnfB [Haemophilus aegyptius ATCC 11116] Length = 193 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 22/66 (33%), Gaps = 10/66 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C C CP AI + + I C C LC CP D Sbjct: 104 FIDENMCIGCTKCIQACPVDAIIGTNK----------AMHTIIPDLCTGCELCVAPCPTD 153 Query: 117 AIVEGP 122 I+ P Sbjct: 154 CILMIP 159 >gi|319943295|ref|ZP_08017578.1| electron transport complex protein RnfB [Lautropia mirabilis ATCC 51599] gi|319743837|gb|EFV96241.1| electron transport complex protein RnfB [Lautropia mirabilis ATCC 51599] Length = 248 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 22/81 (27%), Gaps = 10/81 (12%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 + CI C C CP AI ++ + Sbjct: 72 PLAADLEPMPVRHVVRIDPLHCIGCTKCILACPVDAIVGAP----------RFQHQVLTD 121 Query: 102 KCIYCGLCQEACPVDAIVEGP 122 +C C LC CP D I P Sbjct: 122 RCTGCELCLPPCPTDCISLVP 142 Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats. Identities = 16/36 (44%), Positives = 17/36 (47%) Query: 89 GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 ID + CI C C ACPVDAIV P F Sbjct: 79 PMPVRHVVRIDPLHCIGCTKCILACPVDAIVGAPRF 114 >gi|312881025|ref|ZP_07740825.1| Fe-S cluster domain protein [Aminomonas paucivorans DSM 12260] gi|310784316|gb|EFQ24714.1| Fe-S cluster domain protein [Aminomonas paucivorans DSM 12260] Length = 576 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 23/67 (34%), Gaps = 11/67 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 C C C CP +AI +E G + C+ CGLC E CP Sbjct: 8 YTQTNNCHDCFKCLRQCPVKAIRLEEG-----------HARVLPELCVSCGLCVEVCPAK 56 Query: 117 AIVEGPN 123 A + Sbjct: 57 AKCIRDD 63 >gi|292494172|ref|YP_003533315.1| formate dehydrogenase alpha subunit [Haloferax volcanii DS2] gi|291369344|gb|ADE01574.1| formate dehydrogenase alpha subunit [Haloferax volcanii DS2] Length = 1111 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 4/71 (5%) Query: 57 PNGEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 +CI C C C + IE ++ + C+ CG C Sbjct: 207 QIDRNKCILCNRCVEGCNDVQVEGVLRIEGSGEDTRIGFQSDAETMADSDCVSCGHCATV 266 Query: 113 CPVDAIVEGPN 123 CP A+ E Sbjct: 267 CPTGALTEKDI 277 >gi|284161887|ref|YP_003400510.1| methyl-viologen-reducing hydrogenase subunit delta [Archaeoglobus profundus DSM 5631] gi|284011884|gb|ADB57837.1| methyl-viologen-reducing hydrogenase delta subunit [Archaeoglobus profundus DSM 5631] Length = 734 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 28/81 (34%), Gaps = 12/81 (14%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 +G+ E+C C LC A+CP AI + + ID Sbjct: 521 KVFEALKGKEMKYYSITDIEKCSKCGLCYAVCPHNAIEFDE------------VFKIDPA 568 Query: 102 KCIYCGLCQEACPVDAIVEGP 122 C CGLC CP AI Sbjct: 569 FCKGCGLCYATCPSRAIKLVN 589 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 29/86 (33%), Gaps = 8/86 (9%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA-------ITIESGPRCHDGTRRTV 94 FR + ++C++C C +CP + +T Sbjct: 214 KVDGNFRVKIEKAPQYIDPDKCVSCGKCSEVCPIEVPNPFDFGMTKRKAIDKDFRLAMPD 273 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVE 120 Y+I C CG C + CP +AI Sbjct: 274 TYNIVEG-CNRCGECVKVCPTNAINL 298 Score = 34.3 bits (77), Expect = 5.4, Method: Composition-based stats. Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 2/35 (5%) Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 + DI KC CGLC CP +AI F Sbjct: 531 MKYYSITDI--EKCSKCGLCYAVCPHNAIEFDEVF 563 >gi|261867802|ref|YP_003255724.1| electron transport complex protein RnfB [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413134|gb|ACX82505.1| electron transport complex protein RnfB [Aggregatibacter actinomycetemcomitans D11S-1] Length = 196 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 19/64 (29%), Gaps = 10/64 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C C CP AI + + I C C LC CP Sbjct: 107 FIDENMCIGCTKCIQACPVDAIIGTNK----------SMHTIIPDLCTGCELCVAPCPTS 156 Query: 117 AIVE 120 I Sbjct: 157 CISM 160 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 13/25 (52%), Positives = 15/25 (60%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 ID CI C C +ACPVDAI+ Sbjct: 108 IDENMCIGCTKCIQACPVDAIIGTN 132 >gi|251773161|gb|EES53714.1| NADH dehydrogenase (quinone), chain G [Leptospirillum ferrodiazotrophum] Length = 878 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 22/74 (29%), Gaps = 3/74 (4%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 P L N RCI C C IC G + C Sbjct: 131 PEDMKSEVLVFNSN---RCILCGKCVRICDEIQDVHAIGFINRGFDTIIGPPLGKKLDCE 187 Query: 105 YCGLCQEACPVDAI 118 +CG C E CP AI Sbjct: 188 FCGDCLEVCPTGAI 201 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 13/74 (17%), Positives = 20/74 (27%), Gaps = 8/74 (10%) Query: 48 RGEHALRRYPNGEERCIAC---KLCEAICPAQAI-----TIESGPRCHDGTRRTVRYDID 99 R + + C C C + A ES ++ + Sbjct: 83 RKTNLELLLLHHPLDCPVCDCGGECPLQNMSFAYGGSDSRFESHRNDEPEDMKSEVLVFN 142 Query: 100 MIKCIYCGLCQEAC 113 +CI CG C C Sbjct: 143 SNRCILCGKCVRIC 156 >gi|113867422|ref|YP_725911.1| benzoyl-CoA oxygenase component A [Ralstonia eutropha H16] gi|113526198|emb|CAJ92543.1| Benzoyl-CoA oxygenase component A [Ralstonia eutropha H16] Length = 416 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 11/67 (16%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 ++++ E CI C CE CP AIT + Y + C C C Sbjct: 6 IIKQHLIDPEICIRCNTCEDTCPIDAITHDD-----------RNYVVRADVCNGCNACLS 54 Query: 112 ACPVDAI 118 CP AI Sbjct: 55 PCPTGAI 61 Score = 34.7 bits (78), Expect = 4.1, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 14/25 (56%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 ID CI C C++ CP+DAI Sbjct: 12 IDPEICIRCNTCEDTCPIDAITHDD 36 >gi|91788667|ref|YP_549619.1| formate dehydrogenase subunit alpha [Polaromonas sp. JS666] gi|91697892|gb|ABE44721.1| NAD-dependent formate dehydrogenase iron-sulfur protein / NAD-dependent formate dehydrogenase catalytic subunit [Polaromonas sp. JS666] Length = 945 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 35/97 (36%), Gaps = 5/97 (5%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 + + R + + + CI C C C + + G + + +D+D Sbjct: 133 RFEARQQVRQDLSHPAIAVNLDACIQCTRCLRACRDE-QVNDVIGLAFRGDQAKIVFDMD 191 Query: 100 ----MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 C+ CG C +ACP A++ A +Q Sbjct: 192 DAMGASTCVACGECVQACPTGALMPAREAALAVPDKQ 228 >gi|47092036|ref|ZP_00229829.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria monocytogenes str. 4b H7858] gi|47019476|gb|EAL10216.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria monocytogenes str. 4b H7858] Length = 1124 Score = 47.0 bits (110), Expect = 9e-04, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 33/104 (31%), Gaps = 16/104 (15%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCH 87 T+ + AL E C C C +CP AI E Sbjct: 578 PPGTAAYEKRGIALEVPEWISENCTMCNECAFVCPHAAIRPILTDEEEMESAPEGFMTRE 637 Query: 88 DGTRRTVRYDID--MIKCIYCGLCQEACPV--DAIVEGPNFEFA 127 + +RY I + C C LC E CP A+V P E Sbjct: 638 MRGKDGLRYRIQVSPMDCTGCNLCAETCPAKDKALVMKPFEEVT 681 Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 5/80 (6%) Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV--EGPNFEFATETRQ 132 + A + G V I C C C CP AI E E+ Sbjct: 574 SGAYPPGTAAYEKRGIALEVPEWI-SENCTMCNECAFVCPHAAIRPILTDEEEM--ESAP 630 Query: 133 ELYYDKERLLNNGDRWESEI 152 E + +E +G R+ ++ Sbjct: 631 EGFMTREMRGKDGLRYRIQV 650 >gi|329298912|ref|ZP_08256248.1| electron transport complex, RnfABCDGE type subunit C [Plautia stali symbiont] Length = 648 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 35/107 (32%), Gaps = 18/107 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C +CPA+ + + G+ + CI CG C CP Sbjct: 371 PQEEQSCIRCSACADVCPAK-LLPQQLYWYSLGSDHDKARAHHIDDCIECGACAYVCP-- 427 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 N RQE K L ++ ++ R Sbjct: 428 -----SNIPLVQYYRQE----KAELRAI------DLEAKRTAEAKAR 459 >gi|325295254|ref|YP_004281768.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Desulfurobacterium thermolithotrophum DSM 11699] gi|325065702|gb|ADY73709.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Desulfurobacterium thermolithotrophum DSM 11699] Length = 97 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 32/92 (34%), Gaps = 10/92 (10%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E GS+ GE R +C+ C +C C P + I Sbjct: 16 EPGSSEKYDTGEWRAWRPVFDSSKCVHCMMCWIFC----------PDSSILVKEEKMVGI 65 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 D C CG+C CP +A+ P + F E Sbjct: 66 DYDHCKGCGICAHECPTNALEMKPEYLFREED 97 >gi|222530053|ref|YP_002573935.1| dihydroorotate dehydrogenase family protein [Caldicellulosiruptor bescii DSM 6725] gi|222456900|gb|ACM61162.1| dihydroorotate dehydrogenase family protein [Caldicellulosiruptor bescii DSM 6725] Length = 381 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 12/62 (19%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E+C +C C +C AI + G + C CGLC E CP AI Sbjct: 326 DKEKCTSCGKCFTVCIYDAIEKDDGKFKVN------------QNCDGCGLCAELCPAKAI 373 Query: 119 VE 120 + Sbjct: 374 LM 375 >gi|119719130|ref|YP_919625.1| putative ATPase RIL [Thermofilum pendens Hrk 5] gi|119524250|gb|ABL77622.1| ABC transporter related [Thermofilum pendens Hrk 5] Length = 601 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 24/78 (30%), Gaps = 1/78 (1%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 +R C C C SG +C + I C+ CG+C + Sbjct: 1 MRVAVIDRSLCRP-SKCNQECVKFCPINRSGSKCVWIDEVENKARISEELCVGCGICVKK 59 Query: 113 CPVDAIVEGPNFEFATET 130 CP AI E E Sbjct: 60 CPFSAISIVNLPEKLAED 77 >gi|94448908|emb|CAJ44289.1| ferredoxin hydrogenase [Heliobacillus mobilis] Length = 606 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 3/67 (4%) Query: 57 PNGEERCIACKLCEAIC---PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + +CI C+ CE IC + D+ + CI CG C +C Sbjct: 156 RHDPNKCIHCRRCENICAKVQENCVIAAQNRGFDTIIAPAFSRDMGDVDCIMCGQCVLSC 215 Query: 114 PVDAIVE 120 PV A+ E Sbjct: 216 PVGALTE 222 >gi|73540385|ref|YP_294905.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ralstonia eutropha JMP134] gi|72117798|gb|AAZ60061.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ralstonia eutropha JMP134] Length = 717 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 9/64 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C C CP QA+ R C+ CGLC++ CP AI Sbjct: 582 DTASCTLCMACAGACPTQALRDNPERPVLGFLERN---------CVQCGLCEKTCPEHAI 632 Query: 119 VEGP 122 P Sbjct: 633 TLVP 636 Score = 41.6 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 22/61 (36%), Gaps = 7/61 (11%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 +G + C C IC QAI R ++ C+ CG C CP A Sbjct: 331 HGRNQTTGCTACIDICSTQAIR-------SQWHDGKGRIEVTPNLCMGCGACTTVCPSGA 383 Query: 118 I 118 I Sbjct: 384 I 384 Score = 38.2 bits (87), Expect = 0.36, Method: Composition-based stats. Identities = 11/29 (37%), Positives = 14/29 (48%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 ID+ C C C EACP +AI + Sbjct: 211 IDLDLCTRCNACIEACPENAIDFSYQIDM 239 >gi|16082498|ref|NP_393676.1| Fe-S oxidoreductase [Thermoplasma acidophilum DSM 1728] Length = 670 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 28/86 (32%), Gaps = 15/86 (17%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVR-----------YDIDMIKCIYCGLCQE 111 C C CE CPA A PR + + C C C E Sbjct: 298 CTDCGRCERACPAYASGTGLDPRAVVQNLKKTVGTETDLVPVILTENAAWSCTTCMACVE 357 Query: 112 ACPVDAIVEGPNFEFATETRQELYYD 137 CPV + F TETR+ L + Sbjct: 358 ECPV----LIRPYNFVTETRRNLVME 379 >gi|54023376|ref|YP_117618.1| putative ferredoxin reductase [Nocardia farcinica IFM 10152] gi|54014884|dbj|BAD56254.1| putative ferredoxin reductase [Nocardia farcinica IFM 10152] Length = 529 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 21/62 (33%), Gaps = 3/62 (4%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C + C CP I +D C+ CG C ACPVDAI Sbjct: 7 QSCCSDASCVYACPVNCIHPTPDEPD---FLTAEMLYVDPQACVDCGACATACPVDAITS 63 Query: 121 GP 122 Sbjct: 64 SK 65 >gi|328951758|ref|YP_004369092.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfobacca acetoxidans DSM 11109] gi|328452082|gb|AEB07911.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfobacca acetoxidans DSM 11109] Length = 370 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 11/65 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E++C C C A C +AI +E+ ID KC+ C C CP I Sbjct: 194 NEKKCTGCGDCVAHCAQEAIRLEADKAV-----------IDPAKCVGCAECILVCPYGNI 242 Query: 119 VEGPN 123 N Sbjct: 243 EIQWN 247 >gi|325280075|ref|YP_004252617.1| electron transport complex, RnfABCDGE type, B subunit [Odoribacter splanchnicus DSM 20712] gi|324311884|gb|ADY32437.1| electron transport complex, RnfABCDGE type, B subunit [Odoribacter splanchnicus DSM 20712] Length = 330 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 28/86 (32%), Gaps = 11/86 (12%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P ++ + + CI C C CP AIT+E+ Sbjct: 195 PKDRRVFVSCVNKDKGGVARKACKAACIGCGKCAKECPFDAITVENNLAY---------- 244 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGP 122 ID KC C C CP AI E Sbjct: 245 -IDYSKCRLCRKCVGVCPTGAIHEVN 269 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 8/81 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCH--------DGTRRTVRYDIDMIKCIYCGLCQ 110 +++C+AC C CP I + + + + V CI CG C Sbjct: 169 DDDKCVACGACVKACPRNIIELRNKGPKDRRVFVSCVNKDKGGVARKACKAACIGCGKCA 228 Query: 111 EACPVDAIVEGPNFEFATETR 131 + CP DAI N + ++ Sbjct: 229 KECPFDAITVENNLAYIDYSK 249 Score = 40.9 bits (94), Expect = 0.061, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 9/60 (15%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C C A CP AI ++S +D KC+ CG C +ACP + I Sbjct: 142 CLGCGDCVAACPFDAIHMDSTTLLP---------VVDDDKCVACGACVKACPRNIIELRN 192 >gi|307129491|ref|YP_003881507.1| Pyruvate-flavodoxin oxidoreductase [Dickeya dadantii 3937] gi|306527020|gb|ADM96950.1| Pyruvate-flavodoxin oxidoreductase [Dickeya dadantii 3937] Length = 1177 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 30/127 (23%), Gaps = 26/127 (20%) Query: 31 KTTINYPFEKGSTS--PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88 + P S + A + C C C A CP AI + P Sbjct: 655 PVSALPPDGTWPVSTTQWEKRNIAEEIPLWKPDLCTQCNHCVAACPHSAIRAKVVPADAM 714 Query: 89 ----------------GTRRTVRYDIDMIKCIYCGLCQEACPV--------DAIVEGPNF 124 + + C C LC E CP AI P Sbjct: 715 AGAPESLQSLDVKARDMRGQKYVLQVAPEDCTGCNLCVEVCPAKDRQNPEIKAINMEPRL 774 Query: 125 EFATETR 131 + + Sbjct: 775 DHVATEK 781 >gi|294101124|ref|YP_003552982.1| electron transport complex, RnfABCDGE type, B subunit [Aminobacterium colombiense DSM 12261] gi|293616104|gb|ADE56258.1| electron transport complex, RnfABCDGE type, B subunit [Aminobacterium colombiense DSM 12261] Length = 266 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 5/70 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQEAC 113 E C C C A CP IT+ + + + +I + CI CGLC + C Sbjct: 168 DESLCTGCGACVAACPRDVITLIPADQAMRVLCNSTKKGAGVKNICAVGCIGCGLCAKLC 227 Query: 114 PVDAIVEGPN 123 P AI N Sbjct: 228 PSQAITMKDN 237 Score = 41.6 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 11/56 (19%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C LC +CP+QAIT+ + I+ C C +C CP AI Sbjct: 217 CIGCGLCAKLCPSQAITM-----------KDNLPVINPDLCTGCKICAMKCPARAI 261 Score = 37.8 bits (86), Expect = 0.45, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 11/64 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C+ C C AI++E G +D C CG C ACP D I Sbjct: 139 CKNGCLGFGSCVTACAFDAISVEDGVAV-----------VDESLCTGCGACVAACPRDVI 187 Query: 119 VEGP 122 P Sbjct: 188 TLIP 191 >gi|294646919|ref|ZP_06724540.1| protein HymB [Bacteroides ovatus SD CC 2a] gi|292637864|gb|EFF56261.1| protein HymB [Bacteroides ovatus SD CC 2a] Length = 489 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 10/66 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L Y ERCI C LC CPA AI+ + I KCI CG+C Sbjct: 431 LLTYTISPERCIGCHLCAKNCPADAISGL----------VRKPHVIAPDKCIKCGMCMAR 480 Query: 113 CPVDAI 118 C +AI Sbjct: 481 CKFNAI 486 >gi|317133605|ref|YP_004092919.1| hydrogenase large subunit domain protein [Ethanoligenens harbinense YUAN-3] gi|315471584|gb|ADU28188.1| hydrogenase large subunit domain protein [Ethanoligenens harbinense YUAN-3] Length = 482 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 6/66 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112 E+C C C CP AI P + + D I+ +C CG C Sbjct: 123 DPEKCRECGRCMKACPYHAIIERQRPCVAGCAAKAIEIDDQKKAKINYDRCTSCGNCVYQ 182 Query: 113 CPVDAI 118 CP A+ Sbjct: 183 CPFGAM 188 Score = 40.1 bits (92), Expect = 0.10, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 13/60 (21%) Query: 63 CIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C A CP AI+ E ID KC CG C +ACP AI+E Sbjct: 96 CRGCIAHKCHAACPFGAISYEKHRAV-----------IDPEKCRECGRCMKACPYHAIIE 144 >gi|229826589|ref|ZP_04452658.1| hypothetical protein GCWU000182_01964 [Abiotrophia defectiva ATCC 49176] gi|229789459|gb|EEP25573.1| hypothetical protein GCWU000182_01964 [Abiotrophia defectiva ATCC 49176] Length = 594 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 31/97 (31%), Gaps = 7/97 (7%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA---ITIESGPRCHD 88 T E+ + +R ++CI C C +C A I G Sbjct: 118 ITDTLYEERLEIQEWDKTFPLIR----DSKKCIKCMRCVQVCDKIAGLGIWTLEGTGARS 173 Query: 89 GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 + I C CG C CPV A+ E + E Sbjct: 174 TINVSGARTIAEADCSLCGQCITHCPVGALKERDDTE 210 >gi|206601553|gb|EDZ38036.1| Glutamate synthase, small subunit [Leptospirillum sp. Group II '5-way CG'] Length = 613 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 27/100 (27%), Gaps = 27/100 (27%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIES------------------------- 82 R E+CI C C +CP A+ + Sbjct: 502 RCLTCHVNPIFEGEKCIMCGGCVDVCPEYALKMIPLSDVDLDQESTAKVVESFLGVELSK 561 Query: 83 -GPRCHDGTRRTVRYDIDM-IKCIYCGLCQEACPVDAIVE 120 D I +CI CGLC + CP AI Sbjct: 562 REEVGVDQNLDHSTAMIWEGSRCIRCGLCAKRCPTGAISM 601 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 17/42 (40%) Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 E+ + V + KCI CG C + CP A+ P Sbjct: 495 EAREQASRCLTCHVNPIFEGEKCIMCGGCVDVCPEYALKMIP 536 >gi|207725274|ref|YP_002255670.1| ferredoxin [4fe-4s] protein [Ralstonia solanacearum MolK2] gi|206590508|emb|CAQ37470.1| ferredoxin [4fe-4s] protein [Ralstonia solanacearum MolK2] Length = 265 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 22/64 (34%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C LC CP AI + + C C LC CPVD I Sbjct: 83 DPEHCIGCTLCIQACPVDAIVGAPK----------AMHVVLADWCTGCDLCVAPCPVDCI 132 Query: 119 VEGP 122 P Sbjct: 133 DMVP 136 Score = 38.5 bits (88), Expect = 0.29, Method: Composition-based stats. Identities = 14/21 (66%), Positives = 15/21 (71%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C LC +ACPVDAI Sbjct: 82 IDPEHCIGCTLCIQACPVDAI 102 >gi|254430998|ref|ZP_05044701.1| NAD-dependent formate dehydrogenase alpha subunit [Cyanobium sp. PCC 7001] gi|197625451|gb|EDY38010.1| NAD-dependent formate dehydrogenase alpha subunit [Cyanobium sp. PCC 7001] Length = 196 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 4/87 (4%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDI 98 P+ R + + ++ RCI C C +C A + R D + Sbjct: 83 PYQYPQRRVDASHPQFAIDHHRCILCTRCVRVCDEIEGAHVWDVANRGADCSIIAGLDQP 142 Query: 99 DMI--KCIYCGLCQEACPVDAIVEGPN 123 C CG C + CP AI + Sbjct: 143 WGEVAACTSCGKCVDVCPTGAIFRKDD 169 Score = 34.3 bits (77), Expect = 6.1, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 8/81 (9%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIAC---KLCEAICPAQAITIESGPRCHDGTRR----- 92 +R + G C C CE A A+ ++ + +R Sbjct: 35 TPQLQEWRRMAVELFFAEGNHVCAFCVANGACELQDVAVAVGMDHSRFPYQYPQRRVDAS 94 Query: 93 TVRYDIDMIKCIYCGLCQEAC 113 ++ ID +CI C C C Sbjct: 95 HPQFAIDHHRCILCTRCVRVC 115 >gi|154498692|ref|ZP_02037070.1| hypothetical protein BACCAP_02683 [Bacteroides capillosus ATCC 29799] gi|150272431|gb|EDM99625.1| hypothetical protein BACCAP_02683 [Bacteroides capillosus ATCC 29799] Length = 73 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 27/71 (38%), Gaps = 11/71 (15%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 C++C CE CP AI+ Y ID CI CG C Sbjct: 14 EVFPMAYVIGNDCVSCGSCEGACPVSAISQGDE-----------HYVIDADTCIDCGTCA 62 Query: 111 EACPVDAIVEG 121 E CPV AI +G Sbjct: 63 ETCPVGAIAQG 73 Score = 34.7 bits (78), Expect = 4.2, Method: Composition-based stats. Identities = 11/24 (45%), Positives = 14/24 (58%) Query: 101 IKCIYCGLCQEACPVDAIVEGPNF 124 C+ CG C+ ACPV AI +G Sbjct: 24 NDCVSCGSCEGACPVSAISQGDEH 47 >gi|110801221|ref|YP_695581.1| nitroreductase family protein [Clostridium perfringens ATCC 13124] gi|110675868|gb|ABG84855.1| nitroreductase family protein [Clostridium perfringens ATCC 13124] Length = 272 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 15/91 (16%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 +CI C LC C I + G I C+ CG C CP Sbjct: 1 MMNVDTSKCIGCTLCMQDCIVSDIEMLDGKAH-----------IKNESCMECGHCIAICP 49 Query: 115 VDAIVEGPNFEFA---TETRQELYYDKERLL 142 +A+ + +++ + + D +RLL Sbjct: 50 KEAVSDS-DYDMSKIQEYNKDSFDIDSDRLL 79 >gi|262393721|ref|YP_003285575.1| electron transport complex protein RnfB [Vibrio sp. Ex25] gi|262337315|gb|ACY51110.1| electron transport complex protein RnfB [Vibrio sp. Ex25] Length = 198 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 25/84 (29%), Gaps = 10/84 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 + S E+ CI C C CP AI + + + Sbjct: 90 VEPEESAHDLDNKIPTVAFIHEDMCIGCTKCIQACPVDAIVGGTK----------AVHTV 139 Query: 99 DMIKCIYCGLCQEACPVDAIVEGP 122 +C C LC CP D I P Sbjct: 140 IKDECTGCDLCVAPCPTDCIEMIP 163 >gi|325829944|ref|ZP_08163402.1| pyruvate synthase [Eggerthella sp. HGA1] gi|325488111|gb|EGC90548.1| pyruvate synthase [Eggerthella sp. HGA1] Length = 1180 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 29/99 (29%), Gaps = 17/99 (17%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 FE+G+ + RG CI C C CP I + Sbjct: 673 FEQGAAAYEKRGVAVSVPAW-DAATCIQCNQCAFACPHATIRPFALTEEEAAAAPAATVM 731 Query: 98 ----------------IDMIKCIYCGLCQEACPVDAIVE 120 I + C+ CG+C CP D++ Sbjct: 732 VPAKGKAAAGLQYTLAISPLDCMGCGVCVNVCPSDSLAM 770 >gi|322615214|gb|EFY12136.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322617805|gb|EFY14701.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322624602|gb|EFY21433.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322626948|gb|EFY23744.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634134|gb|EFY30870.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635675|gb|EFY32385.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322640190|gb|EFY36854.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322646387|gb|EFY42899.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322649354|gb|EFY45790.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656475|gb|EFY52764.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322665661|gb|EFY61845.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667185|gb|EFY63352.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671191|gb|EFY67319.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322675169|gb|EFY71246.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680777|gb|EFY76812.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322686952|gb|EFY82929.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323192716|gb|EFZ77943.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323198852|gb|EFZ83951.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323205138|gb|EFZ90116.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208181|gb|EFZ93125.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213535|gb|EFZ98326.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323215794|gb|EGA00537.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221293|gb|EGA05716.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323223841|gb|EGA08144.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323231240|gb|EGA15355.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323233674|gb|EGA17766.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237744|gb|EGA21804.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245727|gb|EGA29721.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246535|gb|EGA30514.1| dihydropyrimidine dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253020|gb|EGA36853.1| dihydropyrimidine dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323254772|gb|EGA38575.1| dihydropyrimidine dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323259528|gb|EGA43163.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323268311|gb|EGA51786.1| dihydropyrimidine dehydrogenase subunit B [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] Length = 411 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + +E+C+ C C C G + + + + K Sbjct: 324 IPAEELDRSYIVYPRINQEKCVGCGRCYISCYDG------GHQAMEWDEHSRTPHCNTEK 377 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 378 CVGCLLCGHVCPVACIDLG 396 >gi|317489895|ref|ZP_07948387.1| ferredoxin oxidoreductase [Eggerthella sp. 1_3_56FAA] gi|316910893|gb|EFV32510.1| ferredoxin oxidoreductase [Eggerthella sp. 1_3_56FAA] Length = 1180 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 29/99 (29%), Gaps = 17/99 (17%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 FE+G+ + RG CI C C CP I + Sbjct: 673 FEQGAAAYEKRGVAVSVPAW-DAATCIQCNQCAFACPHATIRPFALTEEEAAAAPAATVM 731 Query: 98 ----------------IDMIKCIYCGLCQEACPVDAIVE 120 I + C+ CG+C CP D++ Sbjct: 732 VPAKGKAAAGLQYTLAISPLDCMGCGVCVNVCPSDSLAM 770 >gi|315925657|ref|ZP_07921867.1| pyruvate-ferredoxin oxidoreductase [Pseudoramibacter alactolyticus ATCC 23263] gi|315621198|gb|EFV01169.1| pyruvate-ferredoxin oxidoreductase [Pseudoramibacter alactolyticus ATCC 23263] Length = 1170 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 20/74 (27%), Gaps = 16/74 (21%) Query: 57 PNGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTVRYDIDM 100 +CI C C +CP AI + + R + Sbjct: 685 EWDLTKCIQCNHCSLVCPHAAIRPILLDEAEAEAAPAGFETKKATGKNMSSYQFRIQVSP 744 Query: 101 IKCIYCGLCQEACP 114 C CG C CP Sbjct: 745 YDCTGCGSCVNVCP 758 >gi|308271190|emb|CBX27799.1| hypothetical protein N47_C18570 [uncultured Desulfobacterium sp.] Length = 368 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 37/107 (34%), Gaps = 21/107 (19%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + F ++ + +H++ +++CI C C + C Q Sbjct: 159 LSGFGGTIKNLGMGCASRR----------GKMAQHSMVSPGITKKKCIGCGDCISHCSQQ 208 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 AI++ + ID KCI CG C C +AI N Sbjct: 209 AISLVNEKAV-----------IDSTKCIGCGECILICVNEAIQIKWN 244 >gi|301063630|ref|ZP_07204144.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] gi|300442278|gb|EFK06529.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] Length = 633 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 38/97 (39%), Gaps = 15/97 (15%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 ++Y F+ + + +K L Y E+ C C LC CP +AIT E Sbjct: 549 TTIKY-FREEYEAHIRDKKCPAGVCKP----LFHYEISEDACTGCTLCARKCPQEAITGE 603 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + +D KCI CG+C + C A+ Sbjct: 604 KKEP----------HVLDQEKCIKCGICYDVCKFGAV 630 Score = 40.5 bits (93), Expect = 0.087, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 8/62 (12%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 I + Y+I C C LC CP +AI E ++ D+ Sbjct: 561 HIRDKKCPAGVCKPLFHYEISEDACTGCTLCARKCPQEAI--------TGEKKEPHVLDQ 612 Query: 139 ER 140 E+ Sbjct: 613 EK 614 >gi|300120001|emb|CBK19555.2| Pyruvate:Ferredoxin (flavodoxin) Oxidoreductase (PFO) [Blastocystis hominis] gi|300122629|emb|CBK23197.2| Pyruvate:Ferredoxin (flavodoxin) Oxidoreductase (PFO) [Blastocystis hominis] Length = 1223 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 15/106 (14%), Positives = 29/106 (27%), Gaps = 28/106 (26%) Query: 58 NGEERCIACKLCEAICPAQA-----ITIESGPRCHDGTRRTV-----------RYDIDMI 101 +C C C +C + E R + + R + + Sbjct: 718 WDPSKCTQCNQCATLCTHVCIRPFLMDAEESKRAPETFKMIPAVGDELKGLNYRIQVSPM 777 Query: 102 KCIYCGLCQEACPVDAIVEGP------------NFEFATETRQELY 135 C C +C CP +A+ +F + + +L Sbjct: 778 DCTSCEVCSVNCPTNALTMTNFRDVQEVESKNWDFAMTVKNKGDLV 823 >gi|218885697|ref|YP_002435018.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756651|gb|ACL07550.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 445 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 10/59 (16%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++C+ C+ C C AIT + I+ C+ CG C C DAI Sbjct: 246 HDKCVGCRTCARYCNQDAITFNEEQKAS----------INHELCVGCGRCIATCNFDAI 294 >gi|119473031|ref|ZP_01614853.1| electron transport complex protein RnfB [Alteromonadales bacterium TW-7] gi|119444609|gb|EAW25921.1| electron transport complex protein RnfB [Alteromonadales bacterium TW-7] Length = 184 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 10/69 (14%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E+ CI C C CP AI + + + + +C C LC E CPVD Sbjct: 108 YIREDECIGCTKCIQACPVDAIVGAT----------RQMHTVLIDECTGCDLCVEPCPVD 157 Query: 117 AIVEGPNFE 125 I P E Sbjct: 158 CIDMLPVAE 166 >gi|126178573|ref|YP_001046538.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanoculleus marisnigri JR1] gi|125861367|gb|ABN56556.1| CoB--CoM heterodisulfide reductase subunit A [Methanoculleus marisnigri JR1] Length = 672 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 29/80 (36%), Gaps = 9/80 (11%) Query: 45 PRFRGEHALRRYP--NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 P RGE L Y E++C C LC CP A+++ + K Sbjct: 581 PIHRGEVELEPYFAVCLEDKCAGCGLCVNQCPYSALSLVEKD-------GRTVMQVTEAK 633 Query: 103 CIYCGLCQEACPVDAIVEGP 122 C CG C CP AI Sbjct: 634 CKGCGTCGGFCPGGAIWMQH 653 >gi|323702552|ref|ZP_08114215.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574] gi|323532526|gb|EGB22402.1| NADH dehydrogenase (quinone) [Desulfotomaculum nigrificans DSM 574] Length = 649 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 31/67 (46%), Gaps = 10/67 (14%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 AL Y E+C C LC CP QAI E + + ID KCI CG CQ Sbjct: 590 ALVNYRIDGEKCRGCGLCLKNCPVQAIRGE----------KKSPHTIDNEKCIKCGACQT 639 Query: 112 ACPVDAI 118 +C +A+ Sbjct: 640 SCKFNAV 646 Score = 38.5 bits (88), Expect = 0.32, Method: Composition-based stats. Identities = 16/40 (40%), Positives = 17/40 (42%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 I V Y ID KC CGLC + CPV AI Sbjct: 577 HIVDKHCPAGVCSALVNYRIDGEKCRGCGLCLKNCPVQAI 616 >gi|323484742|ref|ZP_08090101.1| hypothetical protein HMPREF9474_01852 [Clostridium symbiosum WAL-14163] gi|323401979|gb|EGA94318.1| hypothetical protein HMPREF9474_01852 [Clostridium symbiosum WAL-14163] Length = 1176 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 24/80 (30%), Gaps = 14/80 (17%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITI----ESGPRCHDGTR---------RTV 94 RG N + CI C C +CP I E +G + Sbjct: 680 RGIAVNVPVWN-PDNCIQCNFCSYVCPHAVIRPVALTEEEAAGAEGMKTLPMTGMPQYKF 738 Query: 95 RYDIDMIKCIYCGLCQEACP 114 I + C CG C CP Sbjct: 739 AMTISALDCTGCGSCANVCP 758 >gi|302387721|ref|YP_003823543.1| NADH dehydrogenase (quinone) [Clostridium saccharolyticum WM1] gi|302198349|gb|ADL05920.1| NADH dehydrogenase (quinone) [Clostridium saccharolyticum WM1] Length = 595 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 37/97 (38%), Gaps = 15/97 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 L+ FF+ + + + AL Y E+C C LC CP AI+ Sbjct: 512 TLK-FFRDEYNAHIVDKTCPAGVC----KALLSYYIDAEKCKGCTLCARNCPVNAISGS- 565 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + ID KCI CG+C E C DA+ Sbjct: 566 ---------VKNPHVIDPEKCIKCGVCMEKCKFDAVY 593 >gi|225414543|ref|ZP_03761732.1| hypothetical protein CLOSTASPAR_05766 [Clostridium asparagiforme DSM 15981] gi|225041922|gb|EEG52168.1| hypothetical protein CLOSTASPAR_05766 [Clostridium asparagiforme DSM 15981] Length = 367 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 11/60 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E C+ C C+ C AITIE ID+ KC+ CG C ACP+DA+ Sbjct: 192 NQELCVGCGSCKKNCAHGAITIEDRKAS-----------IDVSKCVGCGRCIGACPLDAV 240 >gi|77176878|gb|ABA64543.1| reductive dehalogenase protein [Dehalococcoides sp. KB1] Length = 479 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 3/74 (4%) Query: 56 YPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + C C +C CP AI R + + D+ C +C +CQ Sbjct: 359 DFGARKFCETCGICADSCPQGAIQQGEATWDARYAWENSGXLGWRNDLTLCNHCPVCQGV 418 Query: 113 CPVDAIVEGPNFEF 126 CP +A + E Sbjct: 419 CPFNAFDKSGXHEI 432 >gi|157834237|pdb|1XER|A Chain A, Structure Of Ferredoxin Length = 103 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 25/84 (29%), Gaps = 2/84 (2%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 G P + CIA C CP P ++ + Sbjct: 21 VYGPVEPPXVLGIHGTIVGVDFDLCIADGSCINACPVNVFQWYDTPGHPASEKKADP--V 78 Query: 99 DMIKCIYCGLCQEACPVDAIVEGP 122 + CI+C C CPV AI P Sbjct: 79 NEQACIFCMACVNVCPVAAIDVKP 102 >gi|150389448|ref|YP_001319497.1| indolepyruvate ferredoxin oxidoreductase [Alkaliphilus metalliredigens QYMF] gi|149949310|gb|ABR47838.1| Indolepyruvate ferredoxin oxidoreductase [Alkaliphilus metalliredigens QYMF] Length = 595 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 6/64 (9%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + CI C+ C I ++ ID C+ C +C + CP Sbjct: 532 HFYVDPSICIGCRSC---VNTNCPPIRMKEYKDYDKLKSS---IDANMCVGCSICAQVCP 585 Query: 115 VDAI 118 V+AI Sbjct: 586 VNAI 589 >gi|331092597|ref|ZP_08341416.1| hypothetical protein HMPREF9477_02059 [Lachnospiraceae bacterium 2_1_46FAA] gi|330400608|gb|EGG80222.1| hypothetical protein HMPREF9477_02059 [Lachnospiraceae bacterium 2_1_46FAA] Length = 580 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 36/107 (33%), Gaps = 4/107 (3%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93 I+ PF++ + + L R +C+ C + + Sbjct: 119 IDIPFKQRLEKMAWNKDFPLIRDSAKCIKCMRCVQVCDKVQNLHVWDLESTGSRTTVHVS 178 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140 I+ C CG C CPV A+ E + + A E DK++ Sbjct: 179 KNRKIEEADCSLCGQCITHCPVGALRERDDTDKAWEA----IADKDK 221 >gi|327309967|ref|YP_004336864.1| Iron-sulfur protein [Thermoproteus uzoniensis 768-20] gi|326946446|gb|AEA11552.1| Iron-sulfur protein [Thermoproteus uzoniensis 768-20] Length = 441 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 38/90 (42%), Gaps = 9/90 (10%) Query: 48 RGEHALRRYPNG--EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 R AL+ Y +C C +C A CP +A + ++ ++ +KC+ Sbjct: 296 RKTQALKMYRVDVDPSKCSLCGVCFAKCPQRAFDVSRTGDA-------IKLTLNPLKCVG 348 Query: 106 CGLCQEACPVDAIVEGPNFEFATETRQELY 135 CG C+E CP AI G + E ++ Sbjct: 349 CGYCEEVCPEKAIAVGRHDSLPPEVEEKAV 378 Score = 35.5 bits (80), Expect = 2.4, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 11/53 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C +CP A+ + +D KC CGLC +CP A+ Sbjct: 116 CSECVDVCPTGALKLADRSVS-----------VDPSKCTECGLCISSCPTGAL 157 >gi|308272512|emb|CBX29116.1| hypothetical protein N47_J00970 [uncultured Desulfobacterium sp.] Length = 822 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 10/60 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + +C C C ICP A+TI + I C CG+C CP +AI Sbjct: 637 DKNKCARCLTCYRICPHNAVTIRDNYQPV----------ISTDACFGCGICVSHCPANAI 686 >gi|297578621|ref|ZP_06940549.1| electron transport complex protein RnfC [Vibrio cholerae RC385] gi|297536215|gb|EFH75048.1| electron transport complex protein RnfC [Vibrio cholerae RC385] Length = 862 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 29/109 (26%), Gaps = 20/109 (18%) Query: 13 LKEFVGA---FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69 L + L + P K + + L N CI C C Sbjct: 333 LPRLIMGGPMMGFTLPH-------AQVPITKTANCILAPTRNELTSSDNEMA-CIRCGQC 384 Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMI----KCIYCGLCQEACP 114 CP + P+ + +D CI CG C CP Sbjct: 385 AEACPVSLL-----PQQLQWHAKAEEFDKCEELNLKDCIECGACAYVCP 428 Score = 36.2 bits (82), Expect = 1.3, Method: Composition-based stats. Identities = 10/13 (76%), Positives = 10/13 (76%) Query: 103 CIYCGLCQEACPV 115 CI CG C EACPV Sbjct: 378 CIRCGQCAEACPV 390 >gi|262191542|ref|ZP_06049725.1| electron transport complex protein RnfC [Vibrio cholerae CT 5369-93] gi|262032596|gb|EEY51151.1| electron transport complex protein RnfC [Vibrio cholerae CT 5369-93] Length = 814 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 29/109 (26%), Gaps = 20/109 (18%) Query: 13 LKEFVGA---FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69 L + L + P K + + L N CI C C Sbjct: 333 LPRLIMGGPMMGFTLPH-------AQVPITKTANCILAPTRNELTSSDNEMA-CIRCGQC 384 Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMI----KCIYCGLCQEACP 114 CP + P+ + +D CI CG C CP Sbjct: 385 AEACPVSLL-----PQQLQWHAKAEEFDKCEELNLKDCIECGACAYVCP 428 Score = 36.2 bits (82), Expect = 1.3, Method: Composition-based stats. Identities = 10/13 (76%), Positives = 10/13 (76%) Query: 103 CIYCGLCQEACPV 115 CI CG C EACPV Sbjct: 378 CIRCGQCAEACPV 390 >gi|229586000|ref|YP_002844502.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Sulfolobus islandicus M.16.27] gi|238620985|ref|YP_002915811.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Sulfolobus islandicus M.16.4] gi|228021050|gb|ACP56457.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Sulfolobus islandicus M.16.27] gi|238382055|gb|ACR43143.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Sulfolobus islandicus M.16.4] Length = 94 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 25/75 (33%), Gaps = 11/75 (14%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G + + CI CK C CP I +G +D C CG+ Sbjct: 30 GAWRIVKPVVDYNNCIGCKACFMFCPESTIVPSNGKV-----------RVDYEYCKGCGV 78 Query: 109 CQEACPVDAIVEGPN 123 C CPV AI Sbjct: 79 CANVCPVKAISMVNE 93 >gi|239626612|ref|ZP_04669643.1| 4Fe-4S ferredoxin [Clostridiales bacterium 1_7_47_FAA] gi|239516758|gb|EEQ56624.1| 4Fe-4S ferredoxin [Clostridiales bacterium 1_7_47FAA] Length = 367 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 11/62 (17%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + C+ C C+ C AITI ID+ KC+ CG C ACPVD Sbjct: 190 YVHTDMCVGCGSCQKNCAHSAITITDRKAS-----------IDVKKCVGCGRCIGACPVD 238 Query: 117 AI 118 A+ Sbjct: 239 AV 240 >gi|239616590|ref|YP_002939912.1| NADH dehydrogenase (quinone) [Kosmotoga olearia TBF 19.5.1] gi|239505421|gb|ACR78908.1| NADH dehydrogenase (quinone) [Kosmotoga olearia TBF 19.5.1] Length = 599 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 33/96 (34%), Gaps = 15/96 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 +RYF K P R L R EE+C+ C C +CP I + Sbjct: 514 TMRYF----WDEYIAHVKEKRCPAKRC-KELTRVVIDEEKCVGCTACARVCPVNGIIGDI 568 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + ID C CG C E C DAI Sbjct: 569 RKP----------HRIDPEICTRCGSCIEVCRFDAI 594 >gi|222529179|ref|YP_002573061.1| nitrite and sulphite reductase 4Fe-4S region [Caldicellulosiruptor bescii DSM 6725] gi|222456026|gb|ACM60288.1| nitrite and sulphite reductase 4Fe-4S region [Caldicellulosiruptor bescii DSM 6725] Length = 289 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 9/76 (11%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G + + C C LC+A+CP +AI I+ + ID KC YCG Sbjct: 152 GIKGAVKPEWEKNSCTFCGLCQAVCPTKAIQIDE---------KNKEITIDRDKCTYCGR 202 Query: 109 CQEACPVDAIVEGPNF 124 C ++CP ++ P + Sbjct: 203 CVKSCPTNSSKGKPGY 218 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 10/68 (14%) Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 C + E G + + C +CGLCQ CP AI E + Sbjct: 139 CGNNCLKAEENDLGIKGAVKPEW---EKNSCTFCGLCQAVCPTKAIQI-------DEKNK 188 Query: 133 ELYYDKER 140 E+ D+++ Sbjct: 189 EITIDRDK 196 >gi|194288744|ref|YP_002004651.1| NAD-dependent formate dehydrogenase subunit alpha [Cupriavidus taiwanensis LMG 19424] gi|193222579|emb|CAQ68582.1| NAD-dependent formate dehydrogenase alpha subunit [Cupriavidus taiwanensis LMG 19424] Length = 959 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 25/91 (27%), Gaps = 4/91 (4%) Query: 37 PFEKGSTSPRFRGEHALRRYP-NGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRR 92 P K + + Y +CI C C C T SG Sbjct: 146 PDAKPIATHTQMKKDESNPYFTYDPSKCIVCNRCVRACEETQGTFALTISGRGFDSRVSP 205 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 C+ CG C +ACP + E Sbjct: 206 GTSQPFMESDCVSCGACVQACPTATLTETSI 236 >gi|254291762|ref|ZP_04962548.1| RnfC-related protein [Vibrio cholerae AM-19226] gi|150422355|gb|EDN14316.1| RnfC-related protein [Vibrio cholerae AM-19226] Length = 854 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 29/109 (26%), Gaps = 20/109 (18%) Query: 13 LKEFVGA---FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69 L + L + P K + + L N CI C C Sbjct: 333 LPRLIMGGPMMGFTLPH-------AQVPITKTANCILAPTRNELTSSDNEMA-CIRCGQC 384 Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMI----KCIYCGLCQEACP 114 CP + P+ + +D CI CG C CP Sbjct: 385 AEACPVSLL-----PQQLQWHAKAEEFDKCEELNLKDCIECGACAYVCP 428 Score = 36.2 bits (82), Expect = 1.3, Method: Composition-based stats. Identities = 10/13 (76%), Positives = 10/13 (76%) Query: 103 CIYCGLCQEACPV 115 CI CG C EACPV Sbjct: 378 CIRCGQCAEACPV 390 >gi|153824972|ref|ZP_01977639.1| RnfC-related protein [Vibrio cholerae MZO-2] gi|149741484|gb|EDM55514.1| RnfC-related protein [Vibrio cholerae MZO-2] Length = 853 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 29/109 (26%), Gaps = 20/109 (18%) Query: 13 LKEFVGA---FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69 L + L + P K + + L N CI C C Sbjct: 333 LPRLIMGGPMMGFTLPH-------AQVPITKTANCILAPTRNELTSSDNEMA-CIRCGQC 384 Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMI----KCIYCGLCQEACP 114 CP + P+ + +D CI CG C CP Sbjct: 385 AEACPVSLL-----PQQLQWHAKAEEFDKCEELNLKDCIECGACAYVCP 428 Score = 36.2 bits (82), Expect = 1.3, Method: Composition-based stats. Identities = 10/13 (76%), Positives = 10/13 (76%) Query: 103 CIYCGLCQEACPV 115 CI CG C EACPV Sbjct: 378 CIRCGQCAEACPV 390 >gi|153829524|ref|ZP_01982191.1| electron transport complex protein RnfC [Vibrio cholerae 623-39] gi|148874984|gb|EDL73119.1| electron transport complex protein RnfC [Vibrio cholerae 623-39] Length = 853 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 29/109 (26%), Gaps = 20/109 (18%) Query: 13 LKEFVGA---FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69 L + L + P K + + L N CI C C Sbjct: 333 LPRLIMGGPMMGFTLPH-------AQVPITKTANCILAPTRNELTSSDNEMA-CIRCGQC 384 Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMI----KCIYCGLCQEACP 114 CP + P+ + +D CI CG C CP Sbjct: 385 AEACPVSLL-----PQQLQWHAKAEEFDKCEELNLKDCIECGACAYVCP 428 Score = 36.2 bits (82), Expect = 1.3, Method: Composition-based stats. Identities = 10/13 (76%), Positives = 10/13 (76%) Query: 103 CIYCGLCQEACPV 115 CI CG C EACPV Sbjct: 378 CIRCGQCAEACPV 390 >gi|124515246|gb|EAY56756.1| Pyridine nucleotide-disulphide oxidoreductase [Leptospirillum rubarum] Length = 613 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 27/100 (27%), Gaps = 27/100 (27%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIES------------------------- 82 R E+CI C C +CP A+ + Sbjct: 502 RCLTCHVNPIFEGEKCIMCGGCVDVCPEYALKMIPLSDVDLDQESTAKVVESFLGVELSK 561 Query: 83 -GPRCHDGTRRTVRYDIDM-IKCIYCGLCQEACPVDAIVE 120 D I +CI CGLC + CP AI Sbjct: 562 REEVGVDQNLDHSTAMIWEGSRCIRCGLCAKRCPTGAISM 601 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 17/42 (40%) Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 E+ + V + KCI CG C + CP A+ P Sbjct: 495 EAREQASRCLTCHVNPIFEGEKCIMCGGCVDVCPEYALKMIP 536 >gi|153800907|ref|ZP_01955493.1| RnfC-related protein [Vibrio cholerae MZO-3] gi|124123498|gb|EAY42241.1| RnfC-related protein [Vibrio cholerae MZO-3] Length = 853 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 29/109 (26%), Gaps = 20/109 (18%) Query: 13 LKEFVGA---FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69 L + L + P K + + L N CI C C Sbjct: 333 LPRLIMGGPMMGFTLPH-------AQVPITKTANCILAPTRNELTSSDNEMA-CIRCGQC 384 Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMI----KCIYCGLCQEACP 114 CP + P+ + +D CI CG C CP Sbjct: 385 AEACPVSLL-----PQQLQWHAKAEEFDKCEELNLKDCIECGACAYVCP 428 Score = 36.2 bits (82), Expect = 1.3, Method: Composition-based stats. Identities = 10/13 (76%), Positives = 10/13 (76%) Query: 103 CIYCGLCQEACPV 115 CI CG C EACPV Sbjct: 378 CIRCGQCAEACPV 390 >gi|121729986|ref|ZP_01682403.1| RnfC-related protein [Vibrio cholerae V52] gi|147674223|ref|YP_001216487.1| electron transport complex protein RnfC [Vibrio cholerae O395] gi|262167228|ref|ZP_06034940.1| electron transport complex protein RnfC [Vibrio cholerae RC27] gi|121628272|gb|EAX60785.1| RnfC-related protein [Vibrio cholerae V52] gi|146316106|gb|ABQ20645.1| RnfC-related protein [Vibrio cholerae O395] gi|262024372|gb|EEY43061.1| electron transport complex protein RnfC [Vibrio cholerae RC27] Length = 773 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 29/109 (26%), Gaps = 20/109 (18%) Query: 13 LKEFVGA---FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69 L + L + P K + + L N CI C C Sbjct: 333 LPRLIMGGPMMGFTLPH-------AQVPITKTANCILAPTRNELTSSDNEMA-CIRCGQC 384 Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMI----KCIYCGLCQEACP 114 CP + P+ + +D CI CG C CP Sbjct: 385 AEACPVSLL-----PQQLQWHAKAEEFDKCEELDLKDCIECGACAYVCP 428 Score = 36.2 bits (82), Expect = 1.3, Method: Composition-based stats. Identities = 10/13 (76%), Positives = 10/13 (76%) Query: 103 CIYCGLCQEACPV 115 CI CG C EACPV Sbjct: 378 CIRCGQCAEACPV 390 >gi|254848145|ref|ZP_05237495.1| electron transport complex protein RnfC [Vibrio cholerae MO10] gi|298498872|ref|ZP_07008679.1| electron transport complex protein RnfC [Vibrio cholerae MAK 757] gi|254843850|gb|EET22264.1| electron transport complex protein RnfC [Vibrio cholerae MO10] gi|297543205|gb|EFH79255.1| electron transport complex protein RnfC [Vibrio cholerae MAK 757] Length = 776 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 29/109 (26%), Gaps = 20/109 (18%) Query: 13 LKEFVGA---FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69 L + L + P K + + L N CI C C Sbjct: 335 LPRLIMGGPMMGFTLPH-------AQVPITKTANCILAPTRNELTSSDNEMA-CIRCGQC 386 Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMI----KCIYCGLCQEACP 114 CP + P+ + +D CI CG C CP Sbjct: 387 AEACPVSLL-----PQQLQWHAKAEEFDKCEELDLKDCIECGACAYVCP 430 Score = 36.2 bits (82), Expect = 1.3, Method: Composition-based stats. Identities = 10/13 (76%), Positives = 10/13 (76%) Query: 103 CIYCGLCQEACPV 115 CI CG C EACPV Sbjct: 380 CIRCGQCAEACPV 392 >gi|121587381|ref|ZP_01677151.1| RnfC-related protein [Vibrio cholerae 2740-80] gi|153819295|ref|ZP_01971962.1| RnfC-related protein [Vibrio cholerae NCTC 8457] gi|153823435|ref|ZP_01976102.1| RnfC-related protein [Vibrio cholerae B33] gi|255745440|ref|ZP_05419388.1| electron transport complex protein RnfC [Vibrio cholera CIRS 101] gi|262151308|ref|ZP_06028443.1| electron transport complex protein RnfC [Vibrio cholerae INDRE 91/1] gi|17369132|sp|Q9KT88|RNFC_VIBCH RecName: Full=Electron transport complex protein rnfC gi|121548384|gb|EAX58446.1| RnfC-related protein [Vibrio cholerae 2740-80] gi|126510155|gb|EAZ72749.1| RnfC-related protein [Vibrio cholerae NCTC 8457] gi|126519044|gb|EAZ76267.1| RnfC-related protein [Vibrio cholerae B33] gi|255736515|gb|EET91912.1| electron transport complex protein RnfC [Vibrio cholera CIRS 101] gi|262030924|gb|EEY49553.1| electron transport complex protein RnfC [Vibrio cholerae INDRE 91/1] Length = 774 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 29/109 (26%), Gaps = 20/109 (18%) Query: 13 LKEFVGA---FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69 L + L + P K + + L N CI C C Sbjct: 333 LPRLIMGGPMMGFTLPH-------AQVPITKTANCILAPTRNELTSSDNEMA-CIRCGQC 384 Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMI----KCIYCGLCQEACP 114 CP + P+ + +D CI CG C CP Sbjct: 385 AEACPVSLL-----PQQLQWHAKAEEFDKCEELDLKDCIECGACAYVCP 428 Score = 36.2 bits (82), Expect = 1.3, Method: Composition-based stats. Identities = 10/13 (76%), Positives = 10/13 (76%) Query: 103 CIYCGLCQEACPV 115 CI CG C EACPV Sbjct: 378 CIRCGQCAEACPV 390 >gi|331269074|ref|YP_004395566.1| hydrogenase (Fe) large chain [Clostridium botulinum BKT015925] gi|329125624|gb|AEB75569.1| hydrogenase (Fe) large chain [Clostridium botulinum BKT015925] Length = 441 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 10/65 (15%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 Y ++CI C C +CP I+ + + + ID KC+ CG C ACP Sbjct: 23 FYFQITDKCIGCTKCAKVCPVSCISGKIKEK----------HVIDTEKCVKCGQCISACP 72 Query: 115 VDAIV 119 + A+ Sbjct: 73 MGALP 77 >gi|325478783|gb|EGC81894.1| ferredoxin [Anaerococcus prevotii ACS-065-V-Col13] Length = 57 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 11/65 (16%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 Y E CI+C CE CP AI+ Y+ID CI CG C C Sbjct: 1 MAYRIDENTCISCGTCEGECPVGAISQGDAA-----------YEIDADACIDCGSCAAVC 49 Query: 114 PVDAI 118 PV+AI Sbjct: 50 PVEAI 54 Score = 34.3 bits (77), Expect = 5.7, Method: Composition-based stats. Identities = 14/27 (51%), Positives = 16/27 (59%) Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGP 122 Y ID CI CG C+ CPV AI +G Sbjct: 3 YRIDENTCISCGTCEGECPVGAISQGD 29 >gi|301156226|emb|CBW15697.1| predicted iron-sulfur protein [Haemophilus parainfluenzae T3T1] Length = 197 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 20/64 (31%), Gaps = 10/64 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C C CP AI + + I C C LC CP D Sbjct: 103 FIDENMCIGCTKCIQACPVDAIIGTNK----------AMHTIIPDLCTGCELCVAPCPTD 152 Query: 117 AIVE 120 I Sbjct: 153 CISM 156 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 13/25 (52%), Positives = 15/25 (60%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 ID CI C C +ACPVDAI+ Sbjct: 104 IDENMCIGCTKCIQACPVDAIIGTN 128 >gi|296134509|ref|YP_003641751.1| formate dehydrogenase, alpha subunit [Thiomonas intermedia K12] gi|295794631|gb|ADG29421.1| formate dehydrogenase, alpha subunit [Thiomonas intermedia K12] Length = 977 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 5/65 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM----IKCIYCGLCQEACP 114 + CI C C C + + G + +D+ C+ CG C +ACP Sbjct: 180 NLDACIQCNRCVRACREE-QVNDVIGYAFRGHHSEIVFDLHDPMGDSTCVACGECVQACP 238 Query: 115 VDAIV 119 A++ Sbjct: 239 TGALM 243 >gi|237737514|ref|ZP_04567995.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium mortiferum ATCC 9817] gi|229419394|gb|EEO34441.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium mortiferum ATCC 9817] Length = 585 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 6/85 (7%) Query: 59 GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQEACPV 115 +CI C+ CE +C Q I +G ++ + C CG C CPV Sbjct: 148 DITKCIMCRRCETMCGDIQGCGILTGVDRGFNVIVNTAFNKNLLETNCTMCGQCVAVCPV 207 Query: 116 DAIVEGPNFEFATETRQELYYDKER 140 A+ E N + ++L K++ Sbjct: 208 GALYETDN---TFKLVEDLMNPKKK 229 >gi|227830813|ref|YP_002832593.1| ATPase RIL [Sulfolobus islandicus L.S.2.15] gi|227457261|gb|ACP35948.1| ABC transporter related [Sulfolobus islandicus L.S.2.15] Length = 600 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 22/75 (29%), Gaps = 5/75 (6%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 + ++C C CP G + I CI CG Sbjct: 1 MRVAVINYDFCKPDKCNL--ECINFCPVD---RSGGKAIELSDIVKGKPVIYEETCIGCG 55 Query: 108 LCQEACPVDAIVEGP 122 +C + CP +AI Sbjct: 56 ICVKKCPYEAISIVN 70 >gi|224368298|ref|YP_002602461.1| HdrA2 [Desulfobacterium autotrophicum HRM2] gi|223691014|gb|ACN14297.1| HdrA2 [Desulfobacterium autotrophicum HRM2] Length = 1017 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 12/78 (15%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGP-------RCHDGTRRTVRYDIDMIKCIY- 105 ++CIAC LC CP + + ++Y ID C+Y Sbjct: 106 HPRYVDTDKCIACGLCAEKCPKKVDDEYNEGLGKRKAIYVSYSQAVPLKYTIDPENCLYL 165 Query: 106 ----CGLCQEACPVDAIV 119 CG C++ CP AI Sbjct: 166 TKGKCGNCEKVCPSHAIN 183 Score = 42.4 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 9/61 (14%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 ERC C C A+CP AIT++ + ++ C CG C CP + Sbjct: 945 QINPERCAGCGGCIAVCPYNAITMD---------KVNHVAVVNDALCKGCGACAATCPSE 995 Query: 117 A 117 A Sbjct: 996 A 996 Score = 41.6 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 13/32 (40%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 I+ +C CG C CP +AI A Sbjct: 945 QINPERCAGCGGCIAVCPYNAITMDKVNHVAV 976 >gi|197103274|ref|YP_002128652.1| pyruvate:ferredoxin oxidoreductase [Phenylobacterium zucineum HLK1] gi|196480550|gb|ACG80077.1| pyruvate:ferredoxin oxidoreductase [Phenylobacterium zucineum HLK1] Length = 1203 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 24/89 (26%), Gaps = 24/89 (26%) Query: 58 NGEERCIACKLCEAICPA---QAITIESGP-------------RCHDGTRRTVRYDIDMI 101 + CI C C CP +A + G ++ + Sbjct: 694 WDPDLCIQCGQCGFACPHSVIRAKYYDEGALAKAPAGFKSAPVNTRGNPNVRFSLEVYLE 753 Query: 102 KCIYCGLCQEACPVD--------AIVEGP 122 C CG+C E CP AI Sbjct: 754 DCTGCGVCVEVCPAHSPLEPDKKAINLTD 782 >gi|194446223|ref|YP_002041458.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194404886|gb|ACF65108.1| dihydroorotate dehydrogenase family protein [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 411 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + +E+C+ C C C G + + + + K Sbjct: 324 IPAEELDRSYIVYPRINQEKCVGCGRCYISCYDG------GHQAMEWDEHSRTPHCNTEK 377 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 378 CVGCLLCGHVCPVACIDLG 396 >gi|168242273|ref|ZP_02667205.1| dihydroorotate dehydrogenase family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194448536|ref|YP_002046240.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197261723|ref|ZP_03161797.1| dihydroorotate dehydrogenase family protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|200387718|ref|ZP_03214330.1| dihydroorotate dehydrogenase family protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|194406840|gb|ACF67059.1| dihydroorotate dehydrogenase family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197239978|gb|EDY22598.1| dihydroorotate dehydrogenase family protein [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|199604816|gb|EDZ03361.1| dihydroorotate dehydrogenase family protein [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205338639|gb|EDZ25403.1| dihydroorotate dehydrogenase family protein [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 411 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + +E+C+ C C C G + + + + K Sbjct: 324 IPAEELDRSYIVYPRINQEKCVGCGRCYISCYDG------GHQAMEWDEHSRTPHCNTEK 377 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 378 CVGCLLCGHVCPVACIDLG 396 >gi|84514374|ref|ZP_01001738.1| putative ferredoxin [Loktanella vestfoldensis SKA53] gi|84511425|gb|EAQ07878.1| putative ferredoxin [Loktanella vestfoldensis SKA53] Length = 634 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 25/82 (30%), Gaps = 9/82 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C C CPA A++ C+ C +C CP DA+ Sbjct: 496 DHDACTLCLACVGACPAGALSDNPD---------LPMLRFTESACVQCSICVATCPEDAL 546 Query: 119 VEGPNFEFATETRQELYYDKER 140 P + A +E Sbjct: 547 SLTPQIDLAAWAAPRRVLKQED 568 >gi|308186747|ref|YP_003930878.1| Electron transport complex protein rnfB [Pantoea vagans C9-1] gi|308057257|gb|ADO09429.1| Electron transport complex protein rnfB [Pantoea vagans C9-1] Length = 192 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 22/74 (29%), Gaps = 10/74 (13%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 E E CI C C CP AI + + + C C L Sbjct: 103 KEPVRTVAFIDEANCIGCTKCIQACPVDAIVGAT----------RAMHTVLSDVCTGCDL 152 Query: 109 CQEACPVDAIVEGP 122 C CP D I P Sbjct: 153 CVAPCPTDCIEMRP 166 >gi|291085135|ref|ZP_06352165.2| dihydroorotate dehydrogenase family protein [Citrobacter youngae ATCC 29220] gi|291072078|gb|EFE10187.1| dihydroorotate dehydrogenase family protein [Citrobacter youngae ATCC 29220] Length = 380 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 23/82 (28%), Gaps = 12/82 (14%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICP---AQAITIESGPRCHDGTRRTVRYDID 99 + ++C+ C C C QA+ R Sbjct: 293 IPAEDLDRSYIVYPNIHLDKCVGCGRCYISCYDGGHQAMEWNEETRTPHCD--------- 343 Query: 100 MIKCIYCGLCQEACPVDAIVEG 121 KC+ C LC CPV I G Sbjct: 344 TEKCVGCLLCGHVCPVACIDLG 365 >gi|298530704|ref|ZP_07018106.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfonatronospira thiodismutans ASO3-1] gi|298510078|gb|EFI33982.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfonatronospira thiodismutans ASO3-1] Length = 367 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 30/109 (27%), Gaps = 21/109 (19%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + F L+ T + L + C C LC +C + Sbjct: 158 LSGFGGALKNLAMGCATRQ---------GKMHQHSGLAPKVDD-SHCQGCGLCMQVCASG 207 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 A+T+ +D KC+ C C C A+ E Sbjct: 208 ALTLVDEKV-----------RMDPEKCVGCAACILVCKTGALQINWETE 245 >gi|187438958|gb|ACD10931.1| pyruvate:ferredoxin oxidoreductase [Blastocystis sp. NandII] Length = 1220 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 42/147 (28%), Gaps = 32/147 (21%) Query: 14 KEFVGAFF--LCLRYFFKAKTTINYP---FEKGSTSPRFRGEHALRRYPNGEERCIACKL 68 + + L K + P E ++ RG N ++ C C Sbjct: 670 PDAFKNLYYPTTLLEGDKFPVSTFTPGGVQETNTSQYEKRGFAVNVPVWN-KDTCTQCNQ 728 Query: 69 CEAICPA--------QAITIESGPR--------CHDGTRRTVRYDIDMIKCIYCGLCQEA 112 C +CP A + P + R + + C C +C Sbjct: 729 CSLMCPHAVIRPFLLDAAESKKAPASFATLPAAGDELKGLNFRIQMSPLDCTGCEVCANV 788 Query: 113 CPVDAIVEGP----------NFEFATE 129 CP ++ P N+EFAT Sbjct: 789 CPTQSLTMKPLSAVRDVEAKNWEFATT 815 >gi|168186810|ref|ZP_02621445.1| hydrogenase [Clostridium botulinum C str. Eklund] gi|169295206|gb|EDS77339.1| hydrogenase [Clostridium botulinum C str. Eklund] Length = 579 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 38/106 (35%), Gaps = 7/106 (6%) Query: 20 FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79 + ++Y K N + R + + +CI C C C + T Sbjct: 114 LKVVMKYKVGPKVRYNIENNTEANYLDTRSKSIII----NRHKCIKCGRCAITCKNKTNT 169 Query: 80 IESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPVDAIVEGP 122 + DG+ + D +D C+ CG C CPV A+ E P Sbjct: 170 QALLFKIIDGSFKVKTIDDKCLDDTNCLLCGQCVNICPVAALSETP 215 >gi|146306435|ref|YP_001186900.1| electron transport complex protein RnfB [Pseudomonas mendocina ymp] gi|166991044|sp|A4XS52|RNFB_PSEMY RecName: Full=Electron transport complex protein rnfB gi|145574636|gb|ABP84168.1| electron transport complex, RnfABCDGE type, B subunit [Pseudomonas mendocina ymp] Length = 191 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 27/83 (32%), Gaps = 10/83 (12%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 + GE E CI C C CP AI + + Sbjct: 89 DVEPEPLDAVEGEKPQMVAFIREAECIGCTKCIQACPVDAIVGAA----------RQMHT 138 Query: 98 IDMIKCIYCGLCQEACPVDAIVE 120 + + +C C LC E CPVD I Sbjct: 139 VIVSECTGCDLCVEPCPVDCIDM 161 >gi|119719485|ref|YP_919980.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Thermofilum pendens Hrk 5] gi|119524605|gb|ABL77977.1| pyruvate ferredoxin oxidoreductase, delta subunit [Thermofilum pendens Hrk 5] Length = 98 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 10/65 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + +CI C +C CP AI +D C CG+C CPV AI Sbjct: 43 NQAKCIRCLMCWVHCPEPAILRGEDDSVA----------VDYDYCKGCGICANVCPVHAI 92 Query: 119 VEGPN 123 P Sbjct: 93 EMVPE 97 >gi|52549058|gb|AAU82907.1| MinD superfamily P-loop ATPase [uncultured archaeon GZfos23H9] Length = 286 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 26/81 (32%), Gaps = 11/81 (13%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 + + L N + C C C A C A+ + + Sbjct: 57 PVIEEIKPAYTLVPRVN-YDLCDYCGKCAAACEYNALVVVPQKEV----------MVFPE 105 Query: 102 KCIYCGLCQEACPVDAIVEGP 122 C CGLC CP DAI E P Sbjct: 106 LCHGCGLCSLVCPQDAISEEP 126 >gi|126173116|ref|YP_001049265.1| formate dehydrogenase subunit alpha [Shewanella baltica OS155] gi|125996321|gb|ABN60396.1| formate dehydrogenase, alpha subunit [Shewanella baltica OS155] Length = 1425 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 24/75 (32%), Gaps = 15/75 (20%) Query: 59 GEERCIACKLCEAICPAQAITIE---------------SGPRCHDGTRRTVRYDIDMIKC 103 RCI+C C +C Q+ S R + KC Sbjct: 647 DANRCISCGKCVDVCQLQSGHCAIQFAHDSYQALPQDLSETIERRAPRVGFSASMADSKC 706 Query: 104 IYCGLCQEACPVDAI 118 + CG C + CP A+ Sbjct: 707 VQCGNCVQVCPTGAL 721 Score = 34.7 bits (78), Expect = 4.9, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 5/50 (10%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL-C 109 +C+ C C +CP A+ R D T I C YCG+ C Sbjct: 704 SKCVQCGNCVQVCPTGALVDARDKRQGDETPLKTASTI----CTYCGVGC 749 >gi|329910059|ref|ZP_08275218.1| putative NADH:ubiquinone oxidoreductase, subunit RnfB [Oxalobacteraceae bacterium IMCC9480] gi|327546284|gb|EGF31313.1| putative NADH:ubiquinone oxidoreductase, subunit RnfB [Oxalobacteraceae bacterium IMCC9480] Length = 242 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 21/62 (33%), Gaps = 10/62 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C LC CP AI + I C C LC CPVD I Sbjct: 98 DEALCIGCTLCIQACPVDAILGAPKQ----------MHTILADLCTGCDLCVAPCPVDCI 147 Query: 119 VE 120 Sbjct: 148 AM 149 Score = 37.0 bits (84), Expect = 0.79, Method: Composition-based stats. Identities = 15/28 (53%), Positives = 16/28 (57%) Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAI 118 R ID CI C LC +ACPVDAI Sbjct: 90 RPRPVAIIDEALCIGCTLCIQACPVDAI 117 >gi|327483731|gb|AEA78138.1| Electron transport complex protein RnfC [Vibrio cholerae LMA3894-4] Length = 770 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 29/109 (26%), Gaps = 20/109 (18%) Query: 13 LKEFVGA---FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69 L + L + P K + + L N CI C C Sbjct: 333 LPRLIMGGPMMGFTLPH-------AQVPITKTANCILAPTRNELTSSENEMA-CIRCGQC 384 Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMI----KCIYCGLCQEACP 114 CP + P+ + +D CI CG C CP Sbjct: 385 AEACPVSLL-----PQQLQWHAKAEEFDKCEELNLKDCIECGACAYVCP 428 Score = 36.2 bits (82), Expect = 1.3, Method: Composition-based stats. Identities = 10/13 (76%), Positives = 10/13 (76%) Query: 103 CIYCGLCQEACPV 115 CI CG C EACPV Sbjct: 378 CIRCGQCAEACPV 390 >gi|298376819|ref|ZP_06986774.1| dihydroorotate dehydrogenase family protein [Bacteroides sp. 3_1_19] gi|298266697|gb|EFI08355.1| dihydroorotate dehydrogenase family protein [Bacteroides sp. 3_1_19] Length = 497 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 21/80 (26%), Gaps = 7/80 (8%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 P + R C+ C C C + ID Sbjct: 425 PNIVPPERLERTQIHRPTVDNSLCLGCGRCFVSCNDG-------GHQAIHFTSMRKPVID 477 Query: 100 MIKCIYCGLCQEACPVDAIV 119 KC+ C LC CP AI Sbjct: 478 EQKCVGCHLCALVCPTFAIH 497 >gi|297539545|ref|YP_003675314.1| RnfABCDGE type electron transport complex subunit B [Methylotenera sp. 301] gi|297258892|gb|ADI30737.1| electron transport complex, RnfABCDGE type, B subunit [Methylotenera sp. 301] Length = 190 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 25/69 (36%), Gaps = 10/69 (14%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C LC CP AI + + I +C C LC CPVD Sbjct: 107 FIDEATCIGCTLCIQACPVDAILGAAK----------HMHTIISSECTGCELCLAPCPVD 156 Query: 117 AIVEGPNFE 125 I P E Sbjct: 157 CITMVPIAE 165 >gi|295091715|emb|CBK77822.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [Clostridium cf. saccharolyticum K10] Length = 1177 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 20/81 (24%), Gaps = 15/81 (18%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQ--------------AITIESGPRCHDGTRRT 93 RG N + CI C C +CP A Sbjct: 680 RGIAVNVPTWN-PDNCIQCNFCSYVCPHAVIRPIAMTDAELAAAPEGTKALPMTGMPEYK 738 Query: 94 VRYDIDMIKCIYCGLCQEACP 114 I + C CG C CP Sbjct: 739 FAMTISALDCTGCGSCANVCP 759 >gi|283798140|ref|ZP_06347293.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium sp. M62/1] gi|291074119|gb|EFE11483.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium sp. M62/1] Length = 1177 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 20/81 (24%), Gaps = 15/81 (18%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQ--------------AITIESGPRCHDGTRRT 93 RG N + CI C C +CP A Sbjct: 680 RGIAVNVPTWN-PDNCIQCNFCSYVCPHAVIRPIAMTDAELAAAPEGTKALPMTGMPEYK 738 Query: 94 VRYDIDMIKCIYCGLCQEACP 114 I + C CG C CP Sbjct: 739 FAMTISALDCTGCGSCANVCP 759 >gi|239624110|ref|ZP_04667141.1| anaerobic sulfite reduction protein C [Clostridiales bacterium 1_7_47_FAA] gi|239522141|gb|EEQ62007.1| anaerobic sulfite reduction protein C [Clostridiales bacterium 1_7_47FAA] Length = 320 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 24/83 (28%), Gaps = 8/83 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + G + ++RC++C C C R Sbjct: 145 CPNDCAKVRMHDFGIMGMTHPEYRQDRCVSCGACVKAC--------EKKSVGALKTVNYR 196 Query: 96 YDIDMIKCIYCGLCQEACPVDAI 118 + KCI CG C CP A Sbjct: 197 VQRNHEKCIGCGECVIQCPTRAW 219 >gi|168209486|ref|ZP_02635111.1| nitroreductase family protein [Clostridium perfringens B str. ATCC 3626] gi|170712325|gb|EDT24507.1| nitroreductase family protein [Clostridium perfringens B str. ATCC 3626] Length = 272 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 15/91 (16%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 +CI C LC C I + G I C+ CG C CP Sbjct: 1 MMNVDTSKCIGCTLCMQDCIVSDIEMLDGKAH-----------IKNESCMECGHCIAICP 49 Query: 115 VDAIVEGPNFEFA---TETRQELYYDKERLL 142 +A+ + +++ + + D +RLL Sbjct: 50 KEAVSDS-DYDMSKIQEYNKDSFDIDSDRLL 79 >gi|160937031|ref|ZP_02084394.1| hypothetical protein CLOBOL_01920 [Clostridium bolteae ATCC BAA-613] gi|158439932|gb|EDP17680.1| hypothetical protein CLOBOL_01920 [Clostridium bolteae ATCC BAA-613] Length = 1178 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 21/81 (25%), Gaps = 15/81 (18%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG N + CI C C +CP +A Sbjct: 680 RGIAVKVPVWN-PDNCIQCNFCAYVCPHAVIRPVAMTADEAAKAPADMKMKDMTGMAGYK 738 Query: 94 VRYDIDMIKCIYCGLCQEACP 114 + + C CG C CP Sbjct: 739 FAISVSALDCTGCGSCANVCP 759 >gi|82734611|gb|ABB89715.1| trichloroethene reductive dehalogenase [Dehalococcoides sp. BRS-PCE] Length = 554 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 3/60 (5%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID---MIKCIYCGLCQEACPVD 116 E C C +C CP QAI+ E Y+ KCI C C+ CP Sbjct: 434 REFCKTCGICAEHCPTQAISHEGPRYDSPHWDXVSGYEGWHLDYHKCINCTNCETFCPFF 493 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%) Query: 103 CIYCGLCQEACPVDAI-VEGPNFE 125 C CG+C E CP AI EGP ++ Sbjct: 437 CKTCGICAEHCPTQAISHEGPRYD 460 >gi|78043445|ref|YP_360076.1| iron-sulfur cluster-binding protein [Carboxydothermus hydrogenoformans Z-2901] gi|77995560|gb|ABB14459.1| iron-sulfur cluster-binding protein [Carboxydothermus hydrogenoformans Z-2901] Length = 368 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 11/62 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C C+ C CPAQAI+ E+G I+ CI CG C C AI Sbjct: 191 NAEICTGCRKCARWCPAQAISYENGKAV-----------INYELCIGCGECTVTCNYHAI 239 Query: 119 VE 120 Sbjct: 240 KI 241 >gi|87303134|ref|ZP_01085932.1| NAD-reducing hydrogenase subunit U [Synechococcus sp. WH 5701] gi|87282301|gb|EAQ74261.1| NAD-reducing hydrogenase subunit U [Synechococcus sp. WH 5701] Length = 238 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 24/79 (30%), Gaps = 6/79 (7%) Query: 59 GEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLCQEACP 114 RCI C C +C A + R + C CG C CP Sbjct: 144 DHNRCILCTRCVRVCDEVEGAHVWDVAWRGEHCRIIAGLDQPWGAVDACTDCGKCVMVCP 203 Query: 115 VDAIVEGPNFEFATETRQE 133 A+ + E E ++ Sbjct: 204 TGALFHKGDSE--GEKHED 220 >gi|331696856|ref|YP_004333095.1| formate dehydrogenase subunit alpha [Pseudonocardia dioxanivorans CB1190] gi|326951545|gb|AEA25242.1| formate dehydrogenase, alpha subunit [Pseudonocardia dioxanivorans CB1190] Length = 942 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 26/80 (32%), Gaps = 2/80 (2%) Query: 55 RYPNGEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + +CI C C C + + R T D C+ CG C +A Sbjct: 162 YFEFDPAKCILCSRCVRACDEVQGTLALTIEGRGFGSTVSPGGTDFLSSDCVSCGACVQA 221 Query: 113 CPVDAIVEGPNFEFATETRQ 132 CP + E E TR Sbjct: 222 CPTATLQERSVVELGLPTRS 241 >gi|315634428|ref|ZP_07889715.1| electron transport complex protein RnfC [Aggregatibacter segnis ATCC 33393] gi|315477018|gb|EFU67763.1| electron transport complex protein RnfC [Aggregatibacter segnis ATCC 33393] Length = 701 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 33/104 (31%), Gaps = 4/104 (3%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CP + + + + + CI CG+C CP Sbjct: 372 PEQEKSCIRCSACSDACPVK-LMPQQLYWFARSENHEKSEEYSLKDCIECGVCAYVCPSH 430 Query: 117 AIVEGPNFEFATETRQELYYDKERL-LNNGDRWESEIVRNIVTD 159 I F E K +L R+E R + Sbjct: 431 -IPLIQYFRQEKAKIWE-IKHKAKLAEEAKIRFEQRQARLEREE 472 >gi|312899003|ref|ZP_07758390.1| 4Fe-4S binding domain protein [Megasphaera micronuciformis F0359] gi|310619910|gb|EFQ03483.1| 4Fe-4S binding domain protein [Megasphaera micronuciformis F0359] Length = 281 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 28/87 (32%), Gaps = 18/87 (20%) Query: 47 FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 F +AL + +CI C C A+C + CI C Sbjct: 212 FFNRYALTGIAVDKNKCIHCGRCAAVCKSDVTLAGDKE------------------CISC 253 Query: 107 GLCQEACPVDAIVEGPNFEFATETRQE 133 G C + CPV A+ + E R Sbjct: 254 GECVDVCPVHAVYKRKLIMRKVEERDN 280 >gi|308274768|emb|CBX31367.1| hypothetical protein N47_E48790 [uncultured Desulfobacterium sp.] Length = 943 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 23/67 (34%), Gaps = 10/67 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C+ C C CP + +ID KC CG+C CP AI Sbjct: 871 DTEHCVKCLTCVRSCPFDVPVFNIEKQI---------IEIDDAKCQGCGVCASVCPRQAI 921 Query: 119 VEGPNFE 125 +E Sbjct: 922 QL-NYYE 927 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 24/86 (27%), Gaps = 7/86 (8%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP-------RCHDGTRRTVRY 96 F R C C C CP AI + + + Sbjct: 29 PGNFTVALVNRPRYIDPVICTGCGECARHCPVTAINRYNKGLDERRATFIEYPQAVPLAF 88 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGP 122 ID CI CGLC+ C AI Sbjct: 89 GIDANTCIGCGLCESMCVAKAIRYDD 114 >gi|326791478|ref|YP_004309299.1| hydrogenase, Fe-only [Clostridium lentocellum DSM 5427] gi|326542242|gb|ADZ84101.1| hydrogenase, Fe-only [Clostridium lentocellum DSM 5427] Length = 584 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%) Query: 59 GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115 ++CI C+ CE +C Q++ SG +++D+ C +CG C CP Sbjct: 150 DMDKCIMCRRCETMCNKVQSVGALSGINRGFDAVVATAFEVDLADSVCTHCGQCVAVCPT 209 Query: 116 DAIVE 120 A+ E Sbjct: 210 GALSE 214 >gi|302873899|ref|YP_003842532.1| sulfite reductase, subunit C [Clostridium cellulovorans 743B] gi|307689854|ref|ZP_07632300.1| anaerobic sulfite reductase, subunit C [Clostridium cellulovorans 743B] gi|302576756|gb|ADL50768.1| sulfite reductase, subunit C [Clostridium cellulovorans 743B] Length = 316 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 25/83 (30%), Gaps = 8/83 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + + G + RCI C+ C C +A S Sbjct: 146 CPNDCIKARMQDFGIIGMTEPQYDPYRCIGCQACVTNCKKRATGALSFENFKVVRDH--- 202 Query: 96 YDIDMIKCIYCGLCQEACPVDAI 118 KCI CG C CP +A Sbjct: 203 -----SKCIGCGECVGKCPTNAW 220 >gi|308234259|ref|ZP_07664996.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Atopobium vaginae DSM 15829] gi|328943810|ref|ZP_08241275.1| hypothetical protein HMPREF0091_10500 [Atopobium vaginae DSM 15829] gi|327491779|gb|EGF23553.1| hypothetical protein HMPREF0091_10500 [Atopobium vaginae DSM 15829] Length = 438 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 26/84 (30%), Gaps = 12/84 (14%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 C C C +CP A ++ R+ + C+ C C CP Sbjct: 331 CDMSACTVCSACTRVCPVNACNLDE----------HGRFSVQTAYCVNCSACALVCPEQC 380 Query: 118 IVE--GPNFEFATETRQELYYDKE 139 IV G E + + KE Sbjct: 381 IVMKQGDTHELIVRDEEAIRLQKE 404 Score = 37.4 bits (85), Expect = 0.60, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 26/82 (31%), Gaps = 12/82 (14%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 +A R G C C +CP AI I+ C CGLC Sbjct: 64 YNAYRAEGVGAHTICTCHACMDVCPVDAIDIKGSTVK------------IADTCRACGLC 111 Query: 110 QEACPVDAIVEGPNFEFATETR 131 ACP +A + + R Sbjct: 112 IAACPTEAFIVSRFMAKSLYDR 133 >gi|254512703|ref|ZP_05124769.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Rhodobacteraceae bacterium KLH11] gi|221532702|gb|EEE35697.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Rhodobacteraceae bacterium KLH11] Length = 396 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 11/68 (16%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L+++ E CI C CE CP QAI + ++ C +C C Sbjct: 5 LKQHLIDPEICIRCYTCEMTCPVQAIEHDDNNVV-----------VNADLCNFCMDCIPV 53 Query: 113 CPVDAIVE 120 CP +I E Sbjct: 54 CPTGSIDE 61 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 16/35 (45%) Query: 89 GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + ++ ID CI C C+ CPV AI N Sbjct: 1 MNKPLKQHLIDPEICIRCYTCEMTCPVQAIEHDDN 35 >gi|168216021|ref|ZP_02641646.1| nitroreductase family protein [Clostridium perfringens NCTC 8239] gi|182381714|gb|EDT79193.1| nitroreductase family protein [Clostridium perfringens NCTC 8239] Length = 272 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 15/91 (16%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 +CI C LC C I + G I C+ CG C CP Sbjct: 1 MMNVDTSKCIGCTLCMQDCIVSDIEMLDGKAH-----------IKNESCMECGHCIAICP 49 Query: 115 VDAIVEGPNFEFA---TETRQELYYDKERLL 142 +A+ + +++ + + D +RLL Sbjct: 50 KEAVSDS-DYDMSKIQEYNKDSFDIDSDRLL 79 >gi|149204187|ref|ZP_01881155.1| formate dehydrogenase, alpha subunit [Roseovarius sp. TM1035] gi|149142629|gb|EDM30674.1| formate dehydrogenase, alpha subunit [Roseovarius sp. TM1035] Length = 924 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 5/65 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114 + CI C LC C + + G +D + C+ CG C +ACP Sbjct: 147 NLDACIQCGLCVRACR-EVQVNDVIGMAGRGHDAYPVFDLADPMGDSTCVACGECVQACP 205 Query: 115 VDAIV 119 A++ Sbjct: 206 TGALM 210 >gi|146281595|ref|YP_001171748.1| electron transport complex protein RnfB [Pseudomonas stutzeri A1501] gi|189043386|sp|A4VIV5|RNFB_PSEU5 RecName: Full=Electron transport complex protein rnfB; AltName: Full=Nitrogen fixation protein rnfB gi|145569800|gb|ABP78906.1| electron transport complex, B subunit [Pseudomonas stutzeri A1501] gi|327479773|gb|AEA83083.1| electron transport complex protein RnfB [Pseudomonas stutzeri DSM 4166] Length = 191 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 27/83 (32%), Gaps = 10/83 (12%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 + GE E CI C C CP AI + + Sbjct: 89 DVEPEPLDAEGGEKPQMVAYIREAECIGCTKCIQACPVDAIVGAA----------RQMHT 138 Query: 98 IDMIKCIYCGLCQEACPVDAIVE 120 + + +C C LC E CPVD I Sbjct: 139 VIISECTGCDLCVEPCPVDCIDM 161 >gi|51947501|gb|AAU14235.1| hydrogenosomal Fe- hydrogenase [Nyctotherus ovalis] Length = 1198 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 1/65 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++CI C +C C Q + G +D +CI CG C CP AI Sbjct: 167 DNDKCINCDICVHTCSLQGLNALGFYNEE-GHFVKSMGTLDTSECIQCGQCINRCPTGAI 225 Query: 119 VEGPN 123 E Sbjct: 226 TEKSE 230 >gi|77360047|ref|YP_339622.1| electron transport complex protein RnfB [Pseudoalteromonas haloplanktis TAC125] gi|76874958|emb|CAI86179.1| Electron transport complex protein rnfB [Pseudoalteromonas haloplanktis TAC125] Length = 184 Score = 47.0 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 10/69 (14%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E+ CI C C CP AI + + + + +C C LC E CPVD Sbjct: 108 YIREDECIGCTKCIQACPVDAIVGAT----------RQMHTVLIDECTGCDLCVEPCPVD 157 Query: 117 AIVEGPNFE 125 I P E Sbjct: 158 CIDMLPVAE 166 >gi|308271661|emb|CBX28269.1| hypothetical protein N47_G35930 [uncultured Desulfobacterium sp.] Length = 988 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 28/79 (35%), Gaps = 7/79 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIE-------SGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 +C AC C +CP A+ + Y ID CI CG+C Sbjct: 81 YIDSVKCTACGQCRQVCPVTAVNEFDCRLDLRKATFIKFPQAVPLSYTIDRNVCIGCGMC 140 Query: 110 QEACPVDAIVEGPNFEFAT 128 ++AC AI F+ Sbjct: 141 EKACLAGAISYSDQPRFSE 159 Score = 42.0 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 19/64 (29%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +RC AC C CP + I+ C CG C CP AI Sbjct: 915 NPDRCAACLTCVRTCPYGVPRVGEEGYAV----------IEPSDCHGCGCCVSECPGKAI 964 Query: 119 VEGP 122 Sbjct: 965 TLKH 968 >gi|284164324|ref|YP_003402603.1| formate dehydrogenase, subunit alpha [Haloterrigena turkmenica DSM 5511] gi|284013979|gb|ADB59930.1| formate dehydrogenase, alpha subunit [Haloterrigena turkmenica DSM 5511] Length = 1130 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 4/69 (5%) Query: 57 PNGEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 +CI C C C + +E + + D C+ CG C Sbjct: 213 QIDRNKCILCNRCVEACNDVQVEGVLRMEGNGQDTRIAFQNGEDTFDESTCVSCGHCATV 272 Query: 113 CPVDAIVEG 121 CP A+VE Sbjct: 273 CPTGALVEQ 281 >gi|163736778|ref|ZP_02144196.1| formate dehydrogenase, alpha subunit [Phaeobacter gallaeciensis BS107] gi|161389382|gb|EDQ13733.1| formate dehydrogenase, alpha subunit [Phaeobacter gallaeciensis BS107] Length = 924 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 5/65 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI----DMIKCIYCGLCQEACP 114 + CI+C LC C + + G +DI C+ CG C +ACP Sbjct: 147 NLDACISCNLCVRACR-EVQVNDVIGMAGRGHDAYPVFDIADPMGASSCVACGECVQACP 205 Query: 115 VDAIV 119 A++ Sbjct: 206 TGALM 210 >gi|163743706|ref|ZP_02151081.1| formate dehydrogenase, alpha subunit [Phaeobacter gallaeciensis 2.10] gi|161383073|gb|EDQ07467.1| formate dehydrogenase, alpha subunit [Phaeobacter gallaeciensis 2.10] Length = 924 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 5/65 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI----DMIKCIYCGLCQEACP 114 + CI+C LC C + + G +DI C+ CG C +ACP Sbjct: 147 NLDACISCNLCVRACR-EVQVNDVIGMAGRGHDAYPVFDIADPMGASSCVACGECVQACP 205 Query: 115 VDAIV 119 A++ Sbjct: 206 TGALM 210 >gi|70606290|ref|YP_255160.1| zinc-containing ferredoxin [Sulfolobus acidocaldarius DSM 639] gi|68566938|gb|AAY79867.1| zinc-containing ferredoxin [Sulfolobus acidocaldarius DSM 639] Length = 104 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 2/64 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CIA C CP P ++ ++ CI+C C CPV AI Sbjct: 42 DFDLCIADGSCITACPVNVFQWYETPGHPASEKKADP--VNEQACIFCMACVNVCPVAAI 99 Query: 119 VEGP 122 P Sbjct: 100 DVKP 103 >gi|329298911|ref|ZP_08256247.1| electron transport complex protein RnfB [Plautia stali symbiont] Length = 192 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 24/84 (28%), Gaps = 10/84 (11%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 E CI C C CP AI + + + C C LC Sbjct: 105 PVRTVAWIDEANCIGCTKCIQACPVDAIVGAT----------RAMHTVLSDVCTGCDLCV 154 Query: 111 EACPVDAIVEGPNFEFATETRQEL 134 CP D I P + +L Sbjct: 155 ALCPTDCIEMRPVATTTANWKWDL 178 >gi|310827119|ref|YP_003959476.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Eubacterium limosum KIST612] gi|308738853|gb|ADO36513.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Eubacterium limosum KIST612] Length = 1178 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 33/109 (30%), Gaps = 28/109 (25%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIE----------------SGPRCHDGTR 91 RG E CI C C +CP AI Sbjct: 677 RGIAVNVPQWI-PENCIQCNQCSFVCPHAAIRPVLMDEAEKAAAPEGFDSIKANGKQFDG 735 Query: 92 RTVRYDIDMIKCIYCGLCQEACP--VDAIVEGP---------NFEFATE 129 R + ++ C CG C +ACP A+ P N+E+AT Sbjct: 736 LQYRIQVSVLDCTGCGNCADACPAKTKALEMKPLETQENQVANWEYATT 784 >gi|296188750|ref|ZP_06857137.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium carboxidivorans P7] gi|296046677|gb|EFG86124.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium carboxidivorans P7] Length = 1170 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 29/98 (29%), Gaps = 20/98 (20%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG + ++CI C C ICP A + T Sbjct: 671 RGIAVMIPQWQ-IDKCIQCNQCSYICPHATVRPFLLNEEEVKNAPDTFETKKAAGKGLET 729 Query: 94 VRYDID--MIKCIYCGLCQEACPVDA---IVEGPNFEF 126 Y I + C CG C + CP I+E E Sbjct: 730 FEYRIQVDPLDCTGCGNCADICPAPGKALIMEQAEHEI 767 >gi|289434096|ref|YP_003463968.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289170340|emb|CBH26880.1| pyruvate flavodoxin/ferredoxin oxidoreductase [Listeria seeligeri serovar 1/2b str. SLCC3954] Length = 1216 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 29/93 (31%), Gaps = 16/93 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPA------------QAITIESGPRCHDGTRRTVRYDI 98 AL E C C C +CP A E + + Y I Sbjct: 680 IALEVPEWISENCTMCNECAFVCPHAAIRPILTDEAEMASAPEGFMTRKMRGKDGLEYRI 739 Query: 99 D--MIKCIYCGLCQEACPV--DAIVEGPNFEFA 127 + C C LC E CP A+V P E A Sbjct: 740 QVSPMDCTGCNLCAETCPAKDKALVMKPFEEIA 772 >gi|262275219|ref|ZP_06053029.1| NAD-dependent formate dehydrogenase alpha subunit [Grimontia hollisae CIP 101886] gi|262220464|gb|EEY71779.1| NAD-dependent formate dehydrogenase alpha subunit [Grimontia hollisae CIP 101886] Length = 957 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 2/73 (2%) Query: 55 RYPNGEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + +CI C C C + R + +C+ CG C +A Sbjct: 167 YFTFDTSKCIVCSRCVRACDEIQGQHALTVERRGFESRIVAGAESFMASECVSCGACVQA 226 Query: 113 CPVDAIVEGPNFE 125 CP A++E E Sbjct: 227 CPTAALIENSVIE 239 >gi|288941461|ref|YP_003443701.1| cobyrinic acid ac-diamide synthase [Allochromatium vinosum DSM 180] gi|288896833|gb|ADC62669.1| Cobyrinic acid ac-diamide synthase [Allochromatium vinosum DSM 180] Length = 296 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 23/64 (35%), Gaps = 11/64 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ERC AC C +C A+ + G + C CG C CP AI Sbjct: 65 DAERCTACGRCAEVCRFNALAVVGGAVL-----------VFDDLCHGCGRCTWICPEQAI 113 Query: 119 VEGP 122 E P Sbjct: 114 HEEP 117 >gi|229523193|ref|ZP_04412600.1| electron transport complex protein RnfB [Vibrio cholerae TM 11079-80] gi|229525629|ref|ZP_04415034.1| electron transport complex protein RnfB [Vibrio cholerae bv. albensis VL426] gi|229339210|gb|EEO04227.1| electron transport complex protein RnfB [Vibrio cholerae bv. albensis VL426] gi|229339556|gb|EEO04571.1| electron transport complex protein RnfB [Vibrio cholerae TM 11079-80] Length = 195 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 25/79 (31%), Gaps = 10/79 (12%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103 S + E+ CI C C CP AI + + + +C Sbjct: 95 SAHDLDDKVKMVAFIHEDMCIGCTKCIQACPVDAIVGGNK----------AVHTVIKNEC 144 Query: 104 IYCGLCQEACPVDAIVEGP 122 C LC CP D I P Sbjct: 145 TGCDLCVAPCPTDCIEMIP 163 >gi|229584237|ref|YP_002842738.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus islandicus M.16.27] gi|228019286|gb|ACP54693.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus islandicus M.16.27] Length = 104 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 2/64 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CIA C CP P ++ ++ CI+C C CPV AI Sbjct: 42 DFDVCIADGSCITACPVNVFRWFDTPGNPVSEKKADPFN--EQACIFCMACVNVCPVAAI 99 Query: 119 VEGP 122 P Sbjct: 100 DVKP 103 >gi|159486358|ref|XP_001701208.1| pyruvate-ferredoxin oxidoreductase [Chlamydomonas reinhardtii] gi|158271908|gb|EDO97718.1| pyruvate-ferredoxin oxidoreductase [Chlamydomonas reinhardtii] Length = 1181 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 34/113 (30%), Gaps = 18/113 (15%) Query: 29 KAKTTINYPF--EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA----------- 75 K ++ P T+ + A + E C C +C +CP Sbjct: 666 KLPVSVFSPEGFVPPGTTVIEKRAIAAQVPIWKAENCTQCNICAFVCPHAAIRPALASPA 725 Query: 76 ---QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLCQEACPVDAIVEGPN 123 A + ++Y I C C LC ACP DA+ P Sbjct: 726 DLVGAPATFGTIQAKGPGMGDLKYRIQVSPYDCTGCDLCTHACPDDALQSVPI 778 >gi|307945312|ref|ZP_07660648.1| 4Fe-4S ferredoxin, iron-sulfur binding [Roseibium sp. TrichSKD4] gi|307771185|gb|EFO30410.1| 4Fe-4S ferredoxin, iron-sulfur binding [Roseibium sp. TrichSKD4] Length = 682 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 25/78 (32%), Gaps = 9/78 (11%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C C + CP A+ + C+ CGLCQ CP I P Sbjct: 525 CTLCLSCVSACPVGALADNPD---------QPQVSFTEAACVQCGLCQTTCPESVITLVP 575 Query: 123 NFEFATETRQELYYDKER 140 F + + +E Sbjct: 576 QFNTSETALRAAVLHEEE 593 Score = 38.2 bits (87), Expect = 0.40, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 17/77 (22%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 C C CPA A+T E+G +D C CG C CP AI Sbjct: 287 CSNCLDACPAGALTSEAGKIA-----------VDHGICGGCGSCSANCPTGAIS------ 329 Query: 126 FATETRQELYYDKERLL 142 + +R +L + L+ Sbjct: 330 YQYPSRPDLLVPIQSLI 346 Score = 33.9 bits (76), Expect = 7.1, Method: Composition-based stats. Identities = 11/31 (35%), Positives = 15/31 (48%) Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 R +I C C C ACPV A+ + P+ Sbjct: 515 YGRIEIRSEGCTLCLSCVSACPVGALADNPD 545 >gi|306819989|ref|ZP_07453640.1| electron transport complex protein RnfB [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304552025|gb|EFM39965.1| electron transport complex protein RnfB [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 340 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 5/72 (6%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV-----RYDIDMIKCIYCGLCQE 111 ++C+AC C +CP I + ++ D + CI C +C + Sbjct: 165 HVDRDKCVACGKCIEVCPKSIIEWIPYNQQVYIYCKSREKGKDVKDKCSVGCIGCQMCVK 224 Query: 112 ACPVDAIVEGPN 123 CP DAI N Sbjct: 225 VCPFDAITFENN 236 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 11/56 (19%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C++C +CP AIT E+ I KC C C E CP I Sbjct: 216 CIGCQMCVKVCPFDAITFENN-----------LPTIHYEKCKQCNKCVEKCPTKTI 260 Score = 42.4 bits (98), Expect = 0.023, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C C AI I + H +D KC+ CG C E CP I Sbjct: 137 CTYGCMGFGTCVRACKFDAIYIGTDGVAH----------VDRDKCVACGKCIEVCPKSII 186 Query: 119 VEGP 122 P Sbjct: 187 EWIP 190 >gi|302390832|ref|YP_003826652.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Acetohalobium arabaticum DSM 5501] gi|302202909|gb|ADL11587.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Acetohalobium arabaticum DSM 5501] Length = 103 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 26/71 (36%), Gaps = 11/71 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++CI C C CP AI E C CG+C CPVDAI Sbjct: 43 DIDQCINCHRCWIYCPDSAIVSEDEEVTGFDHDY----------CKGCGICAHECPVDAI 92 Query: 119 VEGPNFEFATE 129 E +TE Sbjct: 93 SMIKE-EPSTE 102 >gi|299066971|emb|CBJ38166.1| 4Fe-4S ferredoxin, iron-sulphur binding [Ralstonia solanacearum CMR15] Length = 268 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 23/64 (35%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ERCI C LC CP AI + + C C LC CPVD I Sbjct: 86 DPERCIGCTLCIQACPVDAIVGAPK----------AMHVVLADWCTGCDLCVAPCPVDCI 135 Query: 119 VEGP 122 P Sbjct: 136 DMVP 139 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 14/21 (66%), Positives = 16/21 (76%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID +CI C LC +ACPVDAI Sbjct: 85 IDPERCIGCTLCIQACPVDAI 105 >gi|210623722|ref|ZP_03294006.1| hypothetical protein CLOHIR_01957 [Clostridium hiranonis DSM 13275] gi|210153410|gb|EEA84416.1| hypothetical protein CLOHIR_01957 [Clostridium hiranonis DSM 13275] Length = 323 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 29/85 (34%), Gaps = 11/85 (12%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93 + P + + N CI C +CE C A+ +E+ Sbjct: 185 VEKPASQEIIVNCNNTQKGKVVKDNCSAGCIGCGICEKNCKFDAVHVENN---------- 234 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAI 118 ID KC+ C +C E CP I Sbjct: 235 -VAKIDPEKCVGCMVCVEKCPTKVI 258 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 33/82 (40%), Gaps = 10/82 (12%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 EK T ++ ++ C+ C +C C AI+ E V ++I Sbjct: 251 EKCPTKVIAGDLAKRQKVTIDKDLCVGCTICAKQCKFDAISGELK----------VAHEI 300 Query: 99 DMIKCIYCGLCQEACPVDAIVE 120 D KC+ C LC + CP AI Sbjct: 301 DQDKCVGCHLCMQKCPKKAIKL 322 Score = 37.8 bits (86), Expect = 0.54, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 5/70 (7%) Query: 59 GEERCIACKLCEAICPAQ-----AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 EE+C+ C C +CP + E C++ + V D CI CG+C++ C Sbjct: 165 DEEKCVNCGKCREVCPKGLIVEKPASQEIIVNCNNTQKGKVVKDNCSAGCIGCGICEKNC 224 Query: 114 PVDAIVEGPN 123 DA+ N Sbjct: 225 KFDAVHVENN 234 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 11/64 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C+ C ++C AI + G +D KC+ CG C+E CP I Sbjct: 136 CAQGCLGLGTCVSVCAFDAIHVVDGVAV-----------VDEEKCVNCGKCREVCPKGLI 184 Query: 119 VEGP 122 VE P Sbjct: 185 VEKP 188 >gi|159043912|ref|YP_001532706.1| dihydropyrimidine dehydrogenase [Dinoroseobacter shibae DFL 12] gi|157911672|gb|ABV93105.1| dihydroorotate dehydrogenase family protein [Dinoroseobacter shibae DFL 12] Length = 432 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/95 (18%), Positives = 33/95 (34%), Gaps = 8/95 (8%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI C C A C E +++ +C+ Sbjct: 328 QYLNLNYVTKARIDQDSCIKCGRCYAAC-------EDTSHQAISMSADRVFEVIDAECVA 380 Query: 106 CGLCQEACPV-DAIVEGPNFEFATETRQELYYDKE 139 C LC CPV D I + R +K+ Sbjct: 381 CNLCVNVCPVEDCITMVEMQPGEVDPRTGKVVEKD 415 >gi|27380595|ref|NP_772124.1| ferredoxin [Bradyrhizobium japonicum USDA 110] gi|27353760|dbj|BAC50749.1| blr5484 [Bradyrhizobium japonicum USDA 110] Length = 656 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 22/68 (32%), Gaps = 9/68 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C C + CP A+ + C+ CGLCQ CP I Sbjct: 501 DTGGCTLCLSCVSACPTGALRADPE---------RPVLKFVEDACVQCGLCQSTCPEKVI 551 Query: 119 VEGPNFEF 126 P +F Sbjct: 552 TLTPQIDF 559 Score = 40.5 bits (93), Expect = 0.073, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 19/54 (35%), Gaps = 11/54 (20%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 C C +CP AIT + ++ C CG C ACP A Sbjct: 266 TGCHRCLDLCPTGAITPDGD-----------HVAVNADVCAGCGQCAAACPTGA 308 >gi|116748492|ref|YP_845179.1| methyl-viologen-reducing hydrogenase subunit delta [Syntrophobacter fumaroxidans MPOB] gi|116697556|gb|ABK16744.1| methyl-viologen-reducing hydrogenase, delta subunit [Syntrophobacter fumaroxidans MPOB] Length = 739 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 17/92 (18%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 +RC CK C CP AI + + +C CG+C ACP I Sbjct: 530 MQRCTQCKRCTEECPFGAINEDEKANPLP----------NPTRCRRCGVCMGACPERIIS 579 Query: 120 EGPNFEFATETRQELYYDKERLLNNGDRWESE 151 ++ + + + D +E + Sbjct: 580 FRN---YSVTMIGNMIKN----IQVPDEYEEK 604 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 32/99 (32%), Gaps = 4/99 (4%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 L + F I +P+E T G + A+ Q + + S Sbjct: 455 TLNHGFPDSHFICFPYESRRTGIYPAGTVRAPMDYAAA---VQDATGAALKAIQCVEMVS 511 Query: 83 GPRCHDGTRRTVRY-DIDMIKCIYCGLCQEACPVDAIVE 120 G + Y + M +C C C E CP AI E Sbjct: 512 GGKAVHPRAGDTSYPEFFMQRCTQCKRCTEECPFGAINE 550 >gi|325969844|ref|YP_004246036.1| heterodisulfide reductase, subunit A [Vulcanisaeta moutnovskia 768-28] gi|323709047|gb|ADY02534.1| heterodisulfide reductase, subunit A [Vulcanisaeta moutnovskia 768-28] Length = 448 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 7/70 (10%) Query: 59 GEERCIACKLCEAICPA-------QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 EE C C CE +CP + T + ID+ CI+CG C+ Sbjct: 110 NEELCTGCGTCEEVCPVVLPKEYDYGLRGRKAAYIPFDTAVPKKAVIDIDNCIFCGQCER 169 Query: 112 ACPVDAIVEG 121 CP AI Sbjct: 170 ECPAGAIDFT 179 Score = 35.5 bits (80), Expect = 2.3, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 3/42 (7%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139 ++ C CG C+E CPV +++ R+ Y + Sbjct: 109 VNEELCTGCGTCEEVCPVV---LPKEYDYGLRGRKAAYIPFD 147 >gi|297527527|ref|YP_003669551.1| ABC transporter related protein [Staphylothermus hellenicus DSM 12710] gi|297256443|gb|ADI32652.1| ABC transporter related protein [Staphylothermus hellenicus DSM 12710] Length = 601 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 22/67 (32%), Gaps = 6/67 (8%) Query: 59 GEERCIA--CK-LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 E C C C CP + + V I CI CG+C + CP Sbjct: 8 DREYCKPNKCNLECIRFCPVNKTKHKKAIELSPDGKHAV---IYEDICIGCGICVKKCPF 64 Query: 116 DAIVEGP 122 +AI Sbjct: 65 NAISIVN 71 >gi|283778897|ref|YP_003369652.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Pirellula staleyi DSM 6068] gi|283437350|gb|ADB15792.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pirellula staleyi DSM 6068] Length = 718 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 20/64 (31%), Gaps = 14/64 (21%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C C ICP AI + + C C C CP +AI Sbjct: 390 CIHCNKCVQICPFDAIKPD--------------FTTRTTDCTLCQTCAGVCPTEAIKFVE 435 Query: 123 NFEF 126 + Sbjct: 436 RWNL 439 Score = 40.1 bits (92), Expect = 0.095, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 19/63 (30%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C C CP + + +G C C + CP AI P Sbjct: 512 CIRCGECFKACPNNVLQPLGFEQGLEGLWTPAAKPDWAGCESSCNACGQVCPTGAIRAIP 571 Query: 123 NFE 125 E Sbjct: 572 LEE 574 Score = 39.3 bits (90), Expect = 0.20, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 9/57 (15%) Query: 68 LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 C+ +CP+ A+ S + CI+C C + CP DAI P+F Sbjct: 362 WCKYVCPSGAVFSVSNLFRATERKV-------ESSCIHCNKCVQICPFDAIK--PDF 409 >gi|260769053|ref|ZP_05877987.1| electron transport complex protein RnfB [Vibrio furnissii CIP 102972] gi|260617083|gb|EEX42268.1| electron transport complex protein RnfB [Vibrio furnissii CIP 102972] gi|315180794|gb|ADT87708.1| electron transport complex protein RnfB [Vibrio furnissii NCTC 11218] Length = 199 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 29/91 (31%), Gaps = 10/91 (10%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103 S ++ E+ CI C C CP AI + + + +C Sbjct: 95 SAHDLDDNVKTVAFIHEDMCIGCTKCIQACPVDAIVGGNK----------ALHTVIKDEC 144 Query: 104 IYCGLCQEACPVDAIVEGPNFEFATETRQEL 134 C LC CP D I P + ++ Sbjct: 145 TGCDLCVAPCPTDCIEMIPVKTTTDTWKWQM 175 >gi|260768415|ref|ZP_05877349.1| iron-sulfur cluster-binding protein [Vibrio furnissii CIP 102972] gi|260616445|gb|EEX41630.1| iron-sulfur cluster-binding protein [Vibrio furnissii CIP 102972] Length = 553 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 9/75 (12%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C A+CP +A+ E C+ CGLC +ACP +A+ Sbjct: 418 TDCTLCMSCVAVCPTRALHHEGDLPS---------LKFVEQDCVQCGLCVKACPENALTA 468 Query: 121 GPNFEFATETRQELY 135 + RQ + Sbjct: 469 VQQLNWNAAQRQSVV 483 Score = 40.1 bits (92), Expect = 0.091, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 6/54 (11%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 C C CPA A++ E + R I+ C G C +CP +AI Sbjct: 186 CDRCVDACPAGALSSEGSEQTGH------RIQINPYLCQGVGTCATSCPTEAIH 233 >gi|212224463|ref|YP_002307699.1| indolepyruvate: ferredoxin oxidoreductase, alpha subunit [Thermococcus onnurineus NA1] gi|212009420|gb|ACJ16802.1| indolepyruvate: ferredoxin oxidoreductase, alpha subunit [Thermococcus onnurineus NA1] Length = 648 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 9/79 (11%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R Y EE+C CK+C AI ++ + + +D + C CG Sbjct: 579 RAGIKWPLYQVNEEKCTGCKICINAYGCPAIYWDAE---------SGKAKVDPLMCWGCG 629 Query: 108 LCQEACPVDAIVEGPNFEF 126 C + CP DA + E Sbjct: 630 GCAQVCPFDAFEKVREGEL 648 >gi|170289699|ref|YP_001736515.1| indolepyruvate ferredoxin oxidoreductase, alpha and beta subunit [Candidatus Korarchaeum cryptofilum OPF8] gi|170173779|gb|ACB06832.1| Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunit [Candidatus Korarchaeum cryptofilum OPF8] Length = 649 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 11/68 (16%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + Y +++C C++C A +ID C CG C Sbjct: 577 KKIVPYRVNKDKCTYCRVCINTFACPAFVDTG-----------SSVEIDPAICFGCGACV 625 Query: 111 EACPVDAI 118 + CP DAI Sbjct: 626 QVCPYDAI 633 >gi|189423641|ref|YP_001950818.1| electron transfer flavoprotein subunit alpha [Geobacter lovleyi SZ] gi|189419900|gb|ACD94298.1| Electron transfer flavoprotein alpha subunit [Geobacter lovleyi SZ] Length = 443 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 31/83 (37%), Gaps = 16/83 (19%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACK-LCEAICPAQAITIESGPRCHDGTRRTVRYD 97 E + RG L E +CIAC CE+ CP I++ Sbjct: 3 ENTPKIKKPRGRARLL-----EGKCIACGARCESSCPVNCISMNEAGEPV---------- 47 Query: 98 IDMIKCIYCGLCQEACPVDAIVE 120 +D KCI C C + CP A+ Sbjct: 48 VDTEKCIGCLKCVKVCPAQALEM 70 >gi|78357189|ref|YP_388638.1| iron-sulfur cluster-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219594|gb|ABB38943.1| iron-sulfur cluster-binding protein [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 146 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 9/69 (13%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 +R E+ C+ C +C AICP A+ ++ R D +C CGLC Sbjct: 79 PVDQRISRDEDSCMHCGMCTAICPVDALHMDWVARTV---------TFDTERCTACGLCT 129 Query: 111 EACPVDAIV 119 + CPV A+ Sbjct: 130 KVCPVRAMH 138 >gi|326560090|gb|EGE10480.1| RnfABCDGE type electron transport complex subunit B [Moraxella catarrhalis 46P47B1] gi|326564196|gb|EGE14432.1| RnfABCDGE type electron transport complex subunit B [Moraxella catarrhalis 12P80B1] Length = 275 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 28/100 (28%), Gaps = 12/100 (12%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 + T P + R + R E CI C C CP AI + Sbjct: 80 TIANILNKPTKPATPSQWQIDPLTNRPKEV--RAIIQEADCIGCTKCIPACPVDAIVGTA 137 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 I C C LC CPVD I P Sbjct: 138 KHMHS----------IITDLCTGCELCLAPCPVDCIDVIP 167 >gi|323698974|ref|ZP_08110886.1| nitroreductase [Desulfovibrio sp. ND132] gi|323458906|gb|EGB14771.1| nitroreductase [Desulfovibrio desulfuricans ND132] Length = 272 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 7/66 (10%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 + E RC LC A CPA I E G ++ C+ CG C CP Sbjct: 4 FIIDETRCRRDGLCAADCPAGCIVFEEGGLPEPHEKKQ-------AYCLDCGHCMAVCPA 56 Query: 116 DAIVEG 121 DAI Sbjct: 57 DAIRLT 62 >gi|302339761|ref|YP_003804967.1| hydrogenase large subunit domain protein [Spirochaeta smaragdinae DSM 11293] gi|301636946|gb|ADK82373.1| hydrogenase large subunit domain protein [Spirochaeta smaragdinae DSM 11293] Length = 504 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 6/68 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110 +++CI C C +CP AIT P + D ID C+ CGLC Sbjct: 156 HIDQDKCIKCMKCVQVCPYSAITRMVRPCAEACGVGAIDSDEEGFARIDQKVCVSCGLCT 215 Query: 111 EACPVDAI 118 +CP AI Sbjct: 216 VSCPFGAI 223 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 5/61 (8%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-----DIDMIKCIYCGLCQEACPVDA 117 C C E I + + + P R + + ID KCI C C + CP A Sbjct: 117 CEKCPEDEVIVTDKCQSCMAHPCSIVCPRNAITFPEGKAHIDQDKCIKCMKCVQVCPYSA 176 Query: 118 I 118 I Sbjct: 177 I 177 >gi|296113097|ref|YP_003627035.1| RnfABCDGE type electron transport complex subunit B [Moraxella catarrhalis RH4] gi|295920791|gb|ADG61142.1| RnfABCDGE type electron transport complex subunit B [Moraxella catarrhalis RH4] gi|326560473|gb|EGE10855.1| RnfABCDGE type electron transport complex subunit B [Moraxella catarrhalis 7169] gi|326565795|gb|EGE15957.1| RnfABCDGE type electron transport complex subunit B [Moraxella catarrhalis BC1] gi|326570448|gb|EGE20488.1| RnfABCDGE type electron transport complex subunit B [Moraxella catarrhalis BC8] gi|326571131|gb|EGE21155.1| RnfABCDGE type electron transport complex subunit B [Moraxella catarrhalis BC7] gi|326577145|gb|EGE27039.1| RnfABCDGE type electron transport complex subunit B [Moraxella catarrhalis O35E] Length = 275 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 28/100 (28%), Gaps = 12/100 (12%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 + T P + R + R E CI C C CP AI + Sbjct: 80 TIANILNKPTKPATPSQWQIDPLTNRPKEV--RAIIQEADCIGCTKCIPACPVDAIVGTA 137 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 I C C LC CPVD I P Sbjct: 138 KHMHS----------IITDLCTGCELCLAPCPVDCIDVIP 167 >gi|229829138|ref|ZP_04455207.1| hypothetical protein GCWU000342_01223 [Shuttleworthia satelles DSM 14600] gi|229792301|gb|EEP28415.1| hypothetical protein GCWU000342_01223 [Shuttleworthia satelles DSM 14600] Length = 281 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 35/100 (35%), Gaps = 12/100 (12%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 P++ + + + CIAC +CE C A+ + + Sbjct: 185 IIEMIPYDSSYAVSCISEDKGPKVGKVCKAGCIACHMCEKACEYDAVHVVNNIAH----- 239 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 ID KC+ CG C + CP I+ N A + R Sbjct: 240 ------IDQSKCVGCGKCADKCPKKVILMQ-NVPLAEQNR 272 Score = 35.1 bits (79), Expect = 3.2, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 22/64 (34%), Gaps = 11/64 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C CP AI I G +D KC CG C ACP D I Sbjct: 138 CSYGCLGLGTCVRACPFDAIHIVDGISF-----------VDREKCKACGKCVAACPRDII 186 Query: 119 VEGP 122 P Sbjct: 187 EMIP 190 >gi|212223876|ref|YP_002307112.1| putative ATPase RIL [Thermococcus onnurineus NA1] gi|212008833|gb|ACJ16215.1| Hypothetical ATPase [Thermococcus onnurineus NA1] Length = 591 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 22/73 (30%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 +R ++C K +C G R I C CG+C Sbjct: 1 MRIAVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYRPIIQEASCTGCGICVHK 60 Query: 113 CPVDAIVEGPNFE 125 CP +AI E Sbjct: 61 CPFNAITIINLPE 73 >gi|116235050|dbj|BAF34974.1| trichloroethene reductive dehalogenase [uncultured Dehalococcoides sp.] Length = 554 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 3/60 (5%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID---MIKCIYCGLCQEACPVD 116 E C C +C CP QAI+ E Y+ KCI C C+ CP Sbjct: 434 REFCKTCGICAEHCPTQAISHEGPRYDSPHWDCVSGYEGWHLDYHKCINCTNCEAFCPFF 493 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%) Query: 103 CIYCGLCQEACPVDAI-VEGPNFE 125 C CG+C E CP AI EGP ++ Sbjct: 437 CKTCGICAEHCPTQAISHEGPRYD 460 >gi|53802984|ref|YP_115216.1| electron transport complex subunit C [Methylococcus capsulatus str. Bath] gi|53756745|gb|AAU91036.1| electron transport complex, C subunit [Methylococcus capsulatus str. Bath] Length = 495 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 42/106 (39%), Gaps = 5/106 (4%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + + CI C C + CPA + +E R G + + CI CG C CP Sbjct: 374 SDAKACIRCARCVSACPAGLLPLEMVARIRAGQLESAIG-YGLKDCISCGSCSYVCP-SE 431 Query: 118 IVEGPNFEFAT---ETRQELYYDKERLLNNGDRWESEIVRNIVTDS 160 I F++A+ R+++ + E+ + ++ R + Sbjct: 432 IPLVHYFKYASGELVAREQMKHRTEQTKRLAEERQARFERQKREQA 477 >gi|71906800|ref|YP_284387.1| electron transport complex protein RnfC [Dechloromonas aromatica RCB] gi|71846421|gb|AAZ45917.1| Electron transport complex, RnfABCDGE type, C subunit [Dechloromonas aromatica RCB] Length = 570 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 26/97 (26%), Gaps = 6/97 (6%) Query: 36 YPFEKGSTSPRFRGEHA----LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 P K A L E CI C C CP + E Sbjct: 340 VPDTKAPVVKATNCLIAHSPTLFPPKPPEMPCIRCGECARACPHELQPFEMY-WFSRAKN 398 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 + + CI CG C CP I F FA Sbjct: 399 FGKTQEYAIFDCIECGCCSFVCP-SRIPLVQYFRFAK 434 Score = 35.5 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 5/44 (11%) Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGD 146 CI CG C ACP E FE +R + + K + D Sbjct: 371 CIRCGECARACP----HELQPFEMYWFSRAKN-FGKTQEYAIFD 409 >gi|51245051|ref|YP_064935.1| pyruvate synthase, gamma subunit [Desulfotalea psychrophila LSv54] gi|50876088|emb|CAG35928.1| probable pyruvate synthase, gamma subunit [Desulfotalea psychrophila LSv54] Length = 309 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 21/61 (34%), Gaps = 12/61 (19%) Query: 59 GEERCIACKL-CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 +RC C C CP AI R +ID C C +C CP A Sbjct: 245 DYQRCKGCWWICSTFCPDGAI-----------PVRGKIPEIDYDHCKGCMICVAQCPTHA 293 Query: 118 I 118 I Sbjct: 294 I 294 >gi|114047406|ref|YP_737956.1| electron transport complex protein RnfB [Shewanella sp. MR-7] gi|123030634|sp|Q0HVF6|RNFB_SHESR RecName: Full=Electron transport complex protein rnfB gi|113888848|gb|ABI42899.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella sp. MR-7] Length = 193 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 25/72 (34%), Gaps = 10/72 (13%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + E+ CI C C CP AI + + + C C LC Sbjct: 102 QVKKVAYIREDECIGCTKCIQACPVDAIIGAGK----------LMHTVLTADCTGCDLCV 151 Query: 111 EACPVDAIVEGP 122 E CPVD I P Sbjct: 152 EPCPVDCIDMIP 163 >gi|94311696|ref|YP_584906.1| 4Fe-4S ferredoxin [Cupriavidus metallidurans CH34] gi|93355548|gb|ABF09637.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Cupriavidus metallidurans CH34] Length = 726 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 25/64 (39%), Gaps = 9/64 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RC C C CP QA+ + R C+ CGLC++ CP DAI Sbjct: 591 DTARCTLCMACVGACPTQALRDNAERPVLAFVERN---------CVQCGLCEKTCPEDAI 641 Query: 119 VEGP 122 P Sbjct: 642 TLVP 645 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 7/64 (10%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 +G + C C IC QAI+ R ++ C+ CG C CP A Sbjct: 337 HGRNQTTGCTACIDICSTQAIS-------SHWRDGKGRIEVTPNLCMGCGACTTVCPSGA 389 Query: 118 IVEG 121 I G Sbjct: 390 ISYG 393 Score = 37.0 bits (84), Expect = 0.91, Method: Composition-based stats. Identities = 10/29 (34%), Positives = 12/29 (41%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 ID+ C C C ACP AI + Sbjct: 217 IDLDLCTRCNACIAACPEQAIDFSYQIDL 245 Score = 33.9 bits (76), Expect = 7.2, Method: Composition-based stats. Identities = 8/22 (36%), Positives = 11/22 (50%) Query: 97 DIDMIKCIYCGLCQEACPVDAI 118 +D +C C C ACP A+ Sbjct: 589 QVDTARCTLCMACVGACPTQAL 610 >gi|332525143|ref|ZP_08401320.1| electron transport complex, RnfABCDGE type, C subunit [Rubrivivax benzoatilyticus JA2] gi|332108429|gb|EGJ09653.1| electron transport complex, RnfABCDGE type, C subunit [Rubrivivax benzoatilyticus JA2] Length = 462 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 23/82 (28%), Gaps = 1/82 (1%) Query: 47 FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 FR E R CI C C CP G + + +C C Sbjct: 363 FRREDMAERDDRRTYPCIKCGQCVESCPMGLNPSALGMLAAKREYDEMGAHYHLGECFEC 422 Query: 107 GLCQEACPVDAIVEGPNFEFAT 128 G C CP I F A Sbjct: 423 GCCTYVCP-SNIPLVQQFRVAK 443 >gi|323691810|ref|ZP_08106067.1| Pyruvate:ferredoxin oxidoreductase [Clostridium symbiosum WAL-14673] gi|323504176|gb|EGB19981.1| Pyruvate:ferredoxin oxidoreductase [Clostridium symbiosum WAL-14673] Length = 1176 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 24/80 (30%), Gaps = 14/80 (17%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITI----ESGPRCHDGTR---------RTV 94 RG N + CI C C +CP I E +G + Sbjct: 680 RGIAVNVPVWN-PDNCIQCNFCSYVCPHAVIRPVALTEEEAAGAEGMKTLPMTGMPQYKF 738 Query: 95 RYDIDMIKCIYCGLCQEACP 114 I + C CG C CP Sbjct: 739 AMTISALDCTGCGSCANVCP 758 >gi|307130992|ref|YP_003883008.1| inner membrane iron-sulfur protein in SoxR-reducing complex [Dickeya dadantii 3937] gi|306528521|gb|ADM98451.1| inner membrane iron-sulfur protein in SoxR-reducing complex [Dickeya dadantii 3937] Length = 196 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 24/84 (28%), Gaps = 10/84 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E + E+ CI C C CP AI + + + Sbjct: 92 EPQPLDAEAPQKPEPLVAWVDEDNCIGCTKCIQACPVDAIVGTT----------RAVHTV 141 Query: 99 DMIKCIYCGLCQEACPVDAIVEGP 122 C C LC CP D I P Sbjct: 142 IRDLCTGCNLCVPPCPTDCIELRP 165 >gi|289522358|ref|ZP_06439212.1| putative pyridine nucleotide-disulphide oxidoreductase [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504194|gb|EFD25358.1| putative pyridine nucleotide-disulfide oxidoreductase [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 1077 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 5/80 (6%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDMIKC 103 R E L+ + ++CI C C C AI S ++ +D +C Sbjct: 597 RLEEKLKYFDRNMDKCILCGRCVRTCDEIVGLHAIDFVSRGFVSTIHDAYMKP-LDESEC 655 Query: 104 IYCGLCQEACPVDAIVEGPN 123 CGLC + CPV A+ E Sbjct: 656 TGCGLCVQLCPVGALTEKRI 675 Score = 37.8 bits (86), Expect = 0.55, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 28/86 (32%), Gaps = 10/86 (11%) Query: 38 FEKGSTS-PRFRGEHALRRYPNGEERCIACKL-----CE---AICPAQA-ITIESGPRCH 87 E+ F + RC+ C C+ +A T SG R Sbjct: 537 EERLEKPFEEFNMGLTEEQVKIDASRCMECGCPDVFECKLRSYSIEYEASPTRLSGERIK 596 Query: 88 DGTRRTVRYDIDMIKCIYCGLCQEAC 113 + +D +M KCI CG C C Sbjct: 597 RLEEKLKYFDRNMDKCILCGRCVRTC 622 Score = 34.7 bits (78), Expect = 4.0, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 18/55 (32%), Gaps = 7/55 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 E C C LC +CP A+T R +I CG C C Sbjct: 651 DESECTGCGLCVQLCPVGALT-------EKRIERWPHSEIPTATKTTCGECSLGC 698 >gi|262402645|ref|ZP_06079206.1| electron transport complex protein RnfB [Vibrio sp. RC586] gi|262351427|gb|EEZ00560.1| electron transport complex protein RnfB [Vibrio sp. RC586] Length = 195 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 24/80 (30%), Gaps = 10/80 (12%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103 S E+ CI C C CP AI + + + +C Sbjct: 95 SAHDLDNKVKMVAFIHEDMCIGCTKCIQACPVDAIVGGNK----------ALHTVIKNEC 144 Query: 104 IYCGLCQEACPVDAIVEGPN 123 C LC CP D I P Sbjct: 145 TGCDLCVAPCPTDCIEMIPI 164 >gi|294874083|ref|XP_002766836.1| pyruvate:ferredoxin oxidoreductase, putative [Perkinsus marinus ATCC 50983] gi|239868096|gb|EEQ99553.1| pyruvate:ferredoxin oxidoreductase, putative [Perkinsus marinus ATCC 50983] Length = 842 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 30/94 (31%), Gaps = 19/94 (20%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAI---------------TIESGPRCHDGTRRTVR 95 AL ++C C +C CP I T +S + Sbjct: 739 VALMIPIVDMDKCTQCNICSMSCPHACIRPFLLSQAEDDAKPSTFDSRKAKGGAEVAGLH 798 Query: 96 YDID--MIKCIYCGLCQEACPVDAIVEGP--NFE 125 Y I + C C C ACP DA+ +FE Sbjct: 799 YRIQVSPLDCTGCETCVNACPYDALRMEHLADFE 832 >gi|229825402|ref|ZP_04451471.1| hypothetical protein GCWU000182_00758 [Abiotrophia defectiva ATCC 49176] gi|229790406|gb|EEP26520.1| hypothetical protein GCWU000182_00758 [Abiotrophia defectiva ATCC 49176] Length = 317 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 29/88 (32%), Gaps = 17/88 (19%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L Y +C++C C C ++ CI CG C + Sbjct: 239 LLHYNVDFNKCVSCGKCAKTCKMDVDITKNDAHME---------------CIRCGECVKV 283 Query: 113 CPVDAI--VEGPNFEFATETRQELYYDK 138 CP AI GP E +EL +K Sbjct: 284 CPTKAISVNWGPEKMKLLEKARELNKNK 311 >gi|256827981|ref|YP_003156709.1| NADH dehydrogenase (quinone) [Desulfomicrobium baculatum DSM 4028] gi|256577157|gb|ACU88293.1| NADH dehydrogenase (quinone) [Desulfomicrobium baculatum DSM 4028] Length = 612 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 27/68 (39%), Gaps = 10/68 (14%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 AL ++ E RC C LC CPA A+ ID KC+ C C Sbjct: 554 VALLKFEVDESRCRKCGLCHKACPAGAVIWAKKQTA----------RIDREKCVRCLACF 603 Query: 111 EACPVDAI 118 ACP D I Sbjct: 604 SACPFDCI 611 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 20/42 (47%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 I +++++D +C CGLC +ACP A++ Sbjct: 542 HIMDKRCPAKRCVALLKFEVDESRCRKCGLCHKACPAGAVIW 583 >gi|225572688|ref|ZP_03781443.1| hypothetical protein RUMHYD_00877 [Blautia hydrogenotrophica DSM 10507] gi|225039924|gb|EEG50170.1| hypothetical protein RUMHYD_00877 [Blautia hydrogenotrophica DSM 10507] Length = 173 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 25/59 (42%), Gaps = 8/59 (13%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 I C CE+ C AI I G + T I+ KC CGLC ACP AI Sbjct: 42 IPCNPCESACRFHAIHI--------GEQITNLPCIEEEKCTGCGLCVAACPGLAITIVD 92 >gi|218885650|ref|YP_002434971.1| glutamate synthase (NADPH) [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756604|gb|ACL07503.1| Glutamate synthase (NADPH) [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 507 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 9/64 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RCI C++C C +A + + D +C+ C C CP + Sbjct: 18 ERARCINCEVCVRQCSYEAHFWDEARQFVV---------HDSARCVGCHRCAAMCPTSCL 68 Query: 119 VEGP 122 Sbjct: 69 TIRK 72 >gi|167768984|ref|ZP_02441037.1| hypothetical protein ANACOL_00305 [Anaerotruncus colihominis DSM 17241] gi|167668624|gb|EDS12754.1| hypothetical protein ANACOL_00305 [Anaerotruncus colihominis DSM 17241] Length = 976 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 23/73 (31%), Gaps = 2/73 (2%) Query: 43 TSPRFRGEHALRRYP-NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 +P R A N CI C C CP R R + +D Sbjct: 255 VTPSTRAILAFHEDFKNLNIGCIGCSRCAHACPEGLNPFYLY-RSIQNRRYGLFRVLDAQ 313 Query: 102 KCIYCGLCQEACP 114 CI CG C CP Sbjct: 314 MCIGCGTCSYVCP 326 >gi|148643058|ref|YP_001273571.1| polyferredoxin, MvhB [Methanobrevibacter smithii ATCC 35061] gi|148552075|gb|ABQ87203.1| polyferredoxin, MvhB [Methanobrevibacter smithii ATCC 35061] Length = 413 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C LC CP A+ + + + +D+++ KCI C C EACP D I Sbjct: 177 CIKCGLCSQTCPWNAVF-IAEKKPAKRAKTINAFDLELSKCIGCNTCVEACPGDFI 231 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTV-RYDIDMIKCIYCGLCQEACPVDAI 118 CI C C A+C A+++ S + DG T R + + KC CG C EACP + + Sbjct: 322 FASCIRCGACAAVCSNDALSVGSIEKVIDGETVTRDRIEFNPYKCNECGDCIEACPYNML 381 Query: 119 VEGPN 123 N Sbjct: 382 HATGN 386 Score = 40.9 bits (94), Expect = 0.060, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 1/63 (1%) Query: 62 RCIACKLCEAICPAQAITIES-GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C+ C+ C ICP I I + + I + C+ CG C + CPV AI Sbjct: 104 FCVMCQKCVDICPVDVIGIPGIVEPKGEVIDLDGKGSIYINDCVGCGTCVDPCPVSAITL 163 Query: 121 GPN 123 Sbjct: 164 DEI 166 Score = 38.2 bits (87), Expect = 0.39, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 19/61 (31%), Gaps = 11/61 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +C C C CP + + M C CG C +ACP A+ Sbjct: 362 NPYKCNECGDCIEACPYNMLHATGNEKFPI-----------MGFCTLCGQCIDACPKHAL 410 Query: 119 V 119 Sbjct: 411 Y 411 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 4/65 (6%) Query: 62 RCIACK---LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C C +CP A+ +E+ G +R + C CG C+EACP D I Sbjct: 33 HCDTCGGEPKCADVCPEGALKVETYSIAE-GAEEQIRLVFNSTLCNSCGKCEEACPQDTI 91 Query: 119 VEGPN 123 N Sbjct: 92 KLTGN 96 Score = 35.5 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 25/90 (27%), Gaps = 11/90 (12%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 K T G R C +C CE CP I + Sbjct: 53 KVETYSIAEGAEEQIRLVFNSTLCNSCGKCEEACPQDTIKLTGNDLMEV----------- 101 Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 C+ C C + CPVD I E E Sbjct: 102 EGFCVMCQKCVDICPVDVIGIPGIVEPKGE 131 Score = 35.5 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 9/60 (15%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C+ C C CP AIT++ I CI CGLC + CP +A+ Sbjct: 144 NDCVGCGTCVDPCPVSAITLDE---------IGGTISIADDVCIKCGLCSQTCPWNAVFI 194 Score = 35.1 bits (79), Expect = 2.9, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 18/56 (32%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 E+C C CP +AI + + + CI CG C C Sbjct: 280 YDAEKCDFVGACANKCPTEAIRVVTKTGMLCPALEETDAEPSFASCIRCGACAAVC 335 Score = 33.9 bits (76), Expect = 7.2, Method: Composition-based stats. Identities = 10/24 (41%), Positives = 12/24 (50%) Query: 99 DMIKCIYCGLCQEACPVDAIVEGP 122 + CI CG C+ CP AI P Sbjct: 5 NEDGCIRCGACEGTCPTSAIDVTP 28 >gi|148270023|ref|YP_001244483.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Thermotoga petrophila RKU-1] gi|147735567|gb|ABQ46907.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermotoga petrophila RKU-1] Length = 357 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 14/70 (20%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E+C+AC C CP AIT+ + ID KCI CG C C A Sbjct: 193 EKCVACGTCAKFCPVGAITVTKVAK------------IDYEKCIGCGQCIAMCSYGA--M 238 Query: 121 GPNFEFATET 130 P ++ +T++ Sbjct: 239 SPKWDSSTDS 248 Score = 35.5 bits (80), Expect = 2.6, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 14/36 (38%) Query: 87 HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + + KC+ CG C + CPV AI Sbjct: 179 KMEQHSESKPYVVEEKCVACGTCAKFCPVGAITVTK 214 >gi|153000588|ref|YP_001366269.1| electron transport complex protein RnfB [Shewanella baltica OS185] gi|160875224|ref|YP_001554540.1| electron transport complex protein RnfB [Shewanella baltica OS195] gi|217973445|ref|YP_002358196.1| electron transport complex protein RnfB [Shewanella baltica OS223] gi|304408662|ref|ZP_07390283.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella baltica OS183] gi|307305491|ref|ZP_07585239.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella baltica BA175] gi|151365206|gb|ABS08206.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella baltica OS185] gi|160860746|gb|ABX49280.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella baltica OS195] gi|217498580|gb|ACK46773.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella baltica OS223] gi|304352483|gb|EFM16880.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella baltica OS183] gi|306911794|gb|EFN42219.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella baltica BA175] gi|315267417|gb|ADT94270.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella baltica OS678] Length = 204 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 25/72 (34%), Gaps = 10/72 (13%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + E+ CI C C CP AI + + + C C LC Sbjct: 102 QVKKVAYIREDECIGCTKCIQACPVDAIIGAGK----------LMHTVLTTDCTGCDLCV 151 Query: 111 EACPVDAIVEGP 122 E CPVD I P Sbjct: 152 EPCPVDCIDMIP 163 >gi|126090183|ref|YP_001041664.1| electron transport complex protein RnfB [Shewanella baltica OS155] gi|126174476|ref|YP_001050625.1| electron transport complex protein RnfB [Shewanella baltica OS155] gi|125997681|gb|ABN61756.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella baltica OS155] gi|125999839|gb|ABN63909.1| hypothetical protein Sbal_4546 [Shewanella baltica OS155] Length = 199 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 25/72 (34%), Gaps = 10/72 (13%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + E+ CI C C CP AI + + + C C LC Sbjct: 102 QVKKVAYIREDECIGCTKCIQACPVDAIIGAGK----------LMHTVLTTDCTGCDLCV 151 Query: 111 EACPVDAIVEGP 122 E CPVD I P Sbjct: 152 EPCPVDCIDMIP 163 >gi|332528400|ref|ZP_08404394.1| RnfABCDGE type electron transport complex subunit B [Hylemonella gracilis ATCC 19624] gi|332042163|gb|EGI78495.1| RnfABCDGE type electron transport complex subunit B [Hylemonella gracilis ATCC 19624] Length = 248 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 27/70 (38%), Gaps = 10/70 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + E+ CI C LC CP AI G + + ID C C LC Sbjct: 79 MTVAVIDEDWCIGCTLCLKACPTDAI---------LGGNKHMHTVID-AYCTGCELCIPV 128 Query: 113 CPVDAIVEGP 122 CPVD I P Sbjct: 129 CPVDCIHMEP 138 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 14/36 (38%), Positives = 16/36 (44%) Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 ID CI C LC +ACP DAI+ G Sbjct: 79 MTVAVIDEDWCIGCTLCLKACPTDAILGGNKHMHTV 114 >gi|330837744|ref|YP_004412385.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Spirochaeta coccoides DSM 17374] gi|329749647|gb|AEC03003.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Spirochaeta coccoides DSM 17374] Length = 1178 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 27/94 (28%), Gaps = 19/94 (20%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIES----------------GPRCHDGTR 91 RG + E CI C C CP AI + + Sbjct: 675 RGVAPFIPHWI-AESCIQCNQCVQSCPHAAIRAKQIDPALLADAPEGFITLKSNTKNDKN 733 Query: 92 RTVRYDIDMIKCIYCGLCQEACP--VDAIVEGPN 123 + I C CG+C E CP A+ P Sbjct: 734 LQFKIQIYTEDCQGCGVCIETCPAKTKALEFSPI 767 >gi|260655399|ref|ZP_05860887.1| iron-sulfur cluster-binding protein [Jonquetella anthropi E3_33 E1] gi|260629847|gb|EEX48041.1| iron-sulfur cluster-binding protein [Jonquetella anthropi E3_33 E1] Length = 387 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 10/75 (13%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 E CIAC C CP +AI++++ + ID KCI C C CPV AI Sbjct: 213 PEECIACGRCARNCPVRAISMKNPAGANKAF-------IDQSKCIGCSECMTHCPVSAIS 265 Query: 120 EGPNFEFATETRQEL 134 E E R Sbjct: 266 IDWGSE---EDRSAF 277 >gi|253577805|ref|ZP_04855077.1| CoB-CoM heterodisulfide reductase subunit A [Ruminococcus sp. 5_1_39B_FAA] gi|251850123|gb|EES78081.1| CoB-CoM heterodisulfide reductase subunit A [Ruminococcus sp. 5_1_39BFAA] Length = 662 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 1/66 (1%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-DIDMIKCIYCGLCQEACPV 115 + E C C C +CP AI+ E G R T R ++ C CG C ACP Sbjct: 581 KSDELLCNGCSTCANVCPYGAISYEDKQVNDHGIRETRRVAVVNTALCQGCGACTVACPS 640 Query: 116 DAIVEG 121 A+ Sbjct: 641 GAMDLQ 646 Score = 33.9 bits (76), Expect = 7.1, Method: Composition-based stats. Identities = 11/22 (50%), Positives = 14/22 (63%) Query: 98 IDMIKCIYCGLCQEACPVDAIV 119 ++M KC CG+CQE CP I Sbjct: 238 VNMDKCTGCGVCQEKCPSKKIP 259 >gi|189465837|ref|ZP_03014622.1| hypothetical protein BACINT_02199 [Bacteroides intestinalis DSM 17393] gi|189434101|gb|EDV03086.1| hypothetical protein BACINT_02199 [Bacteroides intestinalis DSM 17393] Length = 373 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 10/65 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C +C C A+ + +G + ID KC+ CG C C D Sbjct: 192 DTENCIGCNICVKHCAHDAVHLNAGRKAE----------IDYAKCVGCGQCVALCQYDGA 241 Query: 119 VEGPN 123 + G Sbjct: 242 IMGDE 246 >gi|187778076|ref|ZP_02994549.1| hypothetical protein CLOSPO_01668 [Clostridium sporogenes ATCC 15579] gi|187775004|gb|EDU38806.1| hypothetical protein CLOSPO_01668 [Clostridium sporogenes ATCC 15579] Length = 321 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 22/88 (25%), Gaps = 8/88 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + G + + RCI C C C + Sbjct: 145 CPNDCIKARMHDFGILGMTEPQYDKYRCIGCMACVNNC--------KKRVTGALRFENFK 196 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPN 123 D KCI CG C CP A Sbjct: 197 VIRDHEKCIGCGECVGKCPTGAWTRSKE 224 >gi|10639342|emb|CAC11344.1| conserved hypothetical protein [Thermoplasma acidophilum] Length = 637 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 28/86 (32%), Gaps = 15/86 (17%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVR-----------YDIDMIKCIYCGLCQE 111 C C CE CPA A PR + + C C C E Sbjct: 265 CTDCGRCERACPAYASGTGLDPRAVVQNLKKTVGTETDLVPVILTENAAWSCTTCMACVE 324 Query: 112 ACPVDAIVEGPNFEFATETRQELYYD 137 CPV + F TETR+ L + Sbjct: 325 ECPV----LIRPYNFVTETRRNLVME 346 >gi|297578622|ref|ZP_06940550.1| conserved hypothetical protein [Vibrio cholerae RC385] gi|297536216|gb|EFH75049.1| conserved hypothetical protein [Vibrio cholerae RC385] Length = 195 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 24/79 (30%), Gaps = 10/79 (12%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103 S E+ CI C C CP AI + + + +C Sbjct: 95 SAHDLDNKVKMVAFIHEDMCIGCTKCIQACPVDAIVGGNK----------AVHTVIKNEC 144 Query: 104 IYCGLCQEACPVDAIVEGP 122 C LC CP D I P Sbjct: 145 TGCDLCVAPCPTDCIEMIP 163 >gi|15897231|ref|NP_341836.1| putative ATPase RIL [Sulfolobus solfataricus P2] gi|284174476|ref|ZP_06388445.1| putative ATPase RIL [Sulfolobus solfataricus 98/2] gi|13813430|gb|AAK40626.1| RNase L inhibitor [Sulfolobus solfataricus P2] gi|261601897|gb|ACX91500.1| ABC transporter related protein [Sulfolobus solfataricus 98/2] Length = 600 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 22/75 (29%), Gaps = 5/75 (6%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 + ++C C CP G + I CI CG Sbjct: 1 MRVAVINYDFCKPDKCNL--ECINFCPVD---RSGGKAIELSEIVKGKPVIYEETCIGCG 55 Query: 108 LCQEACPVDAIVEGP 122 +C + CP +AI Sbjct: 56 ICVKKCPYEAISIVN 70 >gi|83409917|emb|CAI64338.1| heterodisulfide reductase, alpha subunit [uncultured archaeon] Length = 660 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 11/64 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ C+AC +C +CP QA++IE I C CG C ACP A+ Sbjct: 589 DEDICVACGVCVPMCPFQALSIEDDK-----------LKILTALCKGCGTCMAACPTGAL 637 Query: 119 VEGP 122 + Sbjct: 638 EQSH 641 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 30/99 (30%), Gaps = 8/99 (8%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 E F+ + + + C C LC CP + +E + Sbjct: 232 EEVDGYVGNFKVKVKHKPRYLNIDECTGCGLCTEKCPVEVPYVEFDEGIGTRKAIYTPFP 291 Query: 98 --------IDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 +D CI CG C +AC AI F+ Sbjct: 292 QAVPLRALVDKSICIDCGACIKACERGAIDMDQQETFSE 330 >gi|85713242|ref|ZP_01044268.1| electron transport complex protein RnfC [Idiomarina baltica OS145] gi|85692937|gb|EAQ30909.1| electron transport complex protein RnfC [Idiomarina baltica OS145] Length = 624 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 2/95 (2%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C +CPA + + + ++ CI CG C CP I Sbjct: 373 DEMACIRCGACAEVCPA-TLQPQQLQWLAKAKDYPALEENNLFDCIECGACAFVCP-SEI 430 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESEIV 153 + A + ++ + R+E+ Sbjct: 431 PLVHYYRQAKSQMRNQAREQAKAELAKKRFEARQA 465 >gi|121603741|ref|YP_981070.1| 4Fe-4S ferredoxin [Polaromonas naphthalenivorans CJ2] gi|120592710|gb|ABM36149.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Polaromonas naphthalenivorans CJ2] Length = 710 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 9/100 (9%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 K + L ++ C C C CPA A+ +++ Sbjct: 555 EVKAEEAIALPAASPLGGLAIDKDACTLCLSCVNACPASALQDNPD---------SLQLK 605 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 C+ CGLC + CP +A+ P + ++ + + Sbjct: 606 FIEKNCVQCGLCVKTCPENALALLPQLRLTPQRKEAVVLN 645 Score = 41.2 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 9/55 (16%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 I C C +C A AI+ + + + ++ C+ CG C CP AI Sbjct: 314 IGCSACIDVCSASAISSDKSRQ---------QIKVNPNLCVGCGACTTVCPSGAI 359 >gi|71029698|ref|XP_764492.1| RNAse L inhibitor [Theileria parva strain Muguga] gi|68351446|gb|EAN32209.1| RNAse L inhibitor, putative [Theileria parva] Length = 636 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 1/83 (1%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 K + E+ LR ++C K C C ++G +C + + I Sbjct: 6 KSKPNDSGMSENKLRIAIVSTDKCKP-KKCRQECKRTCPVTKTGKQCIEVDPTSKIAFIS 64 Query: 100 MIKCIYCGLCQEACPVDAIVEGP 122 CI CG+C + CP +AI Sbjct: 65 EHLCIGCGICVKKCPFEAITIIN 87 >gi|332519075|ref|ZP_08395542.1| iron-sulfur binding transmembrane protein [Lacinutrix algicola 5H-3-7-4] gi|332044923|gb|EGI81116.1| iron-sulfur binding transmembrane protein [Lacinutrix algicola 5H-3-7-4] Length = 530 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 26/83 (31%), Gaps = 15/83 (18%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 +CI+C C C + +I C+ CG+C CP + Sbjct: 452 QCISCGNCSTYCEMGIDVRAYAQKGE---------NIVRSSCVGCGVCSAVCPRGVLKLE 502 Query: 122 PNFEFATETRQELYYDKERLLNN 144 + + KE LL N Sbjct: 503 ND------SMDGRINPKEILLGN 519 >gi|297624163|ref|YP_003705597.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Truepera radiovictrix DSM 17093] gi|297165343|gb|ADI15054.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Truepera radiovictrix DSM 17093] Length = 332 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 3/70 (4%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 P + CI C +C +CP A E P G ++ +C C C +C Sbjct: 238 WTLPRVHDGCIMCPVCTNVCPTGAFKRELSPVQMGGG---GVLKLEPERCNGCNACVTSC 294 Query: 114 PVDAIVEGPN 123 PV I Sbjct: 295 PVRVITLDGE 304 Score = 40.9 bits (94), Expect = 0.059, Method: Composition-based stats. Identities = 22/53 (41%), Positives = 26/53 (49%), Gaps = 12/53 (22%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C +CE CP QAITI +ID I C CGLC +ACP A+ Sbjct: 34 CTVCEETCPHQAITI------------GRAVEIDEIDCTGCGLCVQACPSQAL 74 >gi|294338445|emb|CAZ86771.1| Tungsten-containing formate dehydrogenase alpha subunit [Thiomonas sp. 3As] Length = 949 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 8/86 (9%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 + + A+ + CI C C C + + G + +D Sbjct: 134 ETRRTQPAPDVSHPAM---AVNLDACIQCNRCVRACREE-QVNDVIGYAFRGHHSEIVFD 189 Query: 98 IDM----IKCIYCGLCQEACPVDAIV 119 + C+ CG C +ACP A++ Sbjct: 190 LHDPMGDSTCVACGECVQACPTGALM 215 >gi|291531974|emb|CBK97559.1| dihydroorotate oxidase B, catalytic subunit [Eubacterium siraeum 70/3] Length = 494 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 6/60 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + +CI C C C ++G + D +T + KC+ C LC CPV+ I Sbjct: 431 DKNKCIGCGRCYIAC------YDAGHQALDFDSKTRKPVFLGSKCVGCHLCATVCPVNCI 484 >gi|282164239|ref|YP_003356624.1| formate dehydrogenase beta chain [Methanocella paludicola SANAE] gi|282156553|dbj|BAI61641.1| formate dehydrogenase beta chain [Methanocella paludicola SANAE] Length = 413 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 27/75 (36%), Gaps = 9/75 (12%) Query: 49 GEHALRRYPNGEERCIACKLCEAICP---------AQAITIESGPRCHDGTRRTVRYDID 99 G L +CI C C CP +A ++ G D +R+ Sbjct: 281 GTEKLEAIKKDTSKCIRCYACVENCPICYCNECSTKKAWLVQPGQIPPDFMFHMIRFVHV 340 Query: 100 MIKCIYCGLCQEACP 114 CI CG C+E CP Sbjct: 341 SDSCINCGQCEELCP 355 >gi|255525208|ref|ZP_05392150.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Clostridium carboxidivorans P7] gi|255511071|gb|EET87369.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Clostridium carboxidivorans P7] Length = 1175 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 29/98 (29%), Gaps = 20/98 (20%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG + ++CI C C ICP A + T Sbjct: 676 RGIAVMIPQWQ-IDKCIQCNQCSYICPHATVRPFLLNEEEVKNAPDTFETKKAAGKGLET 734 Query: 94 VRYDID--MIKCIYCGLCQEACPVDA---IVEGPNFEF 126 Y I + C CG C + CP I+E E Sbjct: 735 FEYRIQVDPLDCTGCGNCADICPAPGKALIMEQAEHEI 772 >gi|237713748|ref|ZP_04544229.1| pyruvate-flavodoxin oxidoreductase [Bacteroides sp. D1] gi|262409345|ref|ZP_06085888.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides sp. 2_1_22] gi|294805995|ref|ZP_06764862.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides xylanisolvens SD CC 1b] gi|229446195|gb|EEO51986.1| pyruvate-flavodoxin oxidoreductase [Bacteroides sp. D1] gi|262352797|gb|EEZ01894.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides sp. 2_1_22] gi|294446877|gb|EFG15477.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides xylanisolvens SD CC 1b] Length = 1182 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 28/81 (34%), Gaps = 15/81 (18%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG A N E CI C C +CP A + T Sbjct: 676 RGVAAFVPEWN-AENCIQCNKCAYVCPHASIRPFVLDAEEQKGAKFEQLKAVGKAFDGMT 734 Query: 94 VRYDIDMIKCIYCGLCQEACP 114 R +D++ C+ CG C + CP Sbjct: 735 FRIQVDVLDCLGCGNCADICP 755 >gi|255658358|ref|ZP_05403767.1| iron-sulfur cluster-binding protein [Mitsuokella multacida DSM 20544] gi|260849688|gb|EEX69695.1| iron-sulfur cluster-binding protein [Mitsuokella multacida DSM 20544] Length = 286 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 9/59 (15%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C C +CEA+CP +AIT+++ + +D KC+YCG C ++CP DA Sbjct: 163 DNCTFCGVCEAVCPEKAITVKADE---------GKVVLDESKCVYCGKCIKSCPTDAWQ 212 >gi|225175951|ref|ZP_03729943.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1] gi|225168539|gb|EEG77341.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1] Length = 608 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 26/68 (38%), Gaps = 10/68 (14%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 AL Y E C C LC CP AI+ + ID C+ CGLC Sbjct: 530 KALIEYEIVAEDCKGCGLCRKQCPVDAISGGKKEP----------HVIDQATCLRCGLCV 579 Query: 111 EACPVDAI 118 +C D I Sbjct: 580 NSCKFDCI 587 Score = 40.1 bits (92), Expect = 0.099, Method: Composition-based stats. Identities = 14/44 (31%), Positives = 20/44 (45%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + + + Y+I C CGLC++ CPVDAI G Sbjct: 518 HVRDKVCPAKNCKALIEYEIVAEDCKGCGLCRKQCPVDAISGGK 561 >gi|217974577|ref|YP_002359328.1| formate dehydrogenase subunit alpha [Shewanella baltica OS223] gi|217499712|gb|ACK47905.1| formate dehydrogenase, alpha subunit [Shewanella baltica OS223] Length = 1425 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 24/75 (32%), Gaps = 15/75 (20%) Query: 59 GEERCIACKLCEAICPAQAITIE---------------SGPRCHDGTRRTVRYDIDMIKC 103 RCI+C C +C Q+ S R + KC Sbjct: 647 DANRCISCGKCVDVCQLQSGHCAIQFAHDSYQALPQDLSETIERRAPRVGFSASMADSKC 706 Query: 104 IYCGLCQEACPVDAI 118 + CG C + CP A+ Sbjct: 707 VQCGNCVQVCPTGAL 721 Score = 34.3 bits (77), Expect = 5.1, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 5/50 (10%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL-C 109 +C+ C C +CP A+ R D T I C YCG+ C Sbjct: 704 SKCVQCGNCVQVCPTGALVDARDKRQGDETPLKTASTI----CTYCGVGC 749 >gi|153002002|ref|YP_001367683.1| formate dehydrogenase subunit alpha [Shewanella baltica OS185] gi|151366620|gb|ABS09620.1| formate dehydrogenase, alpha subunit [Shewanella baltica OS185] Length = 1425 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 24/75 (32%), Gaps = 15/75 (20%) Query: 59 GEERCIACKLCEAICPAQAITIE---------------SGPRCHDGTRRTVRYDIDMIKC 103 RCI+C C +C Q+ S R + KC Sbjct: 647 DANRCISCGKCVDVCQLQSGHCAIQFAHDSYQALPQDLSETIERRAPRVGFSASMADSKC 706 Query: 104 IYCGLCQEACPVDAI 118 + CG C + CP A+ Sbjct: 707 VQCGNCVQVCPTGAL 721 Score = 34.7 bits (78), Expect = 4.3, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 5/50 (10%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL-C 109 +C+ C C +CP A+ R D T I C YCG+ C Sbjct: 704 SKCVQCGNCVQVCPTGALVDARDKRQGDETPPKTASTI----CTYCGVGC 749 >gi|91228909|ref|ZP_01262809.1| electron transport complex protein RnfB [Vibrio alginolyticus 12G01] gi|269968667|ref|ZP_06182663.1| electron transport complex protein RnfB [Vibrio alginolyticus 40B] gi|91187540|gb|EAS73872.1| electron transport complex protein RnfB [Vibrio alginolyticus 12G01] gi|269826721|gb|EEZ81059.1| electron transport complex protein RnfB [Vibrio alginolyticus 40B] Length = 198 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 25/84 (29%), Gaps = 10/84 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 + S E+ CI C C CP AI + + + Sbjct: 90 VEPEESAHDLDSKIPTVAFIHEDMCIGCTKCIQACPVDAIVGGTK----------AVHTV 139 Query: 99 DMIKCIYCGLCQEACPVDAIVEGP 122 +C C LC CP D I P Sbjct: 140 IKDECTGCDLCVAPCPTDCIEMIP 163 >gi|262402197|ref|ZP_06078758.1| iron-sulfur cluster-binding protein [Vibrio sp. RC586] gi|297579085|ref|ZP_06941013.1| iron-sulfur cluster-binding protein [Vibrio cholerae RC385] gi|262350979|gb|EEZ00112.1| iron-sulfur cluster-binding protein [Vibrio sp. RC586] gi|297536679|gb|EFH75512.1| iron-sulfur cluster-binding protein [Vibrio cholerae RC385] Length = 553 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 9/75 (12%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C A+CP +A+ C+ CGLC +ACP + Sbjct: 418 SDCTLCMSCVAVCPTRALHPAGDSPA---------LRFIEQDCVQCGLCVKACPEQVLSA 468 Query: 121 GPNFEFATETRQELY 135 P + RQ + Sbjct: 469 TPQLNWNKAARQGVV 483 Score = 41.6 bits (96), Expect = 0.035, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 6/54 (11%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 C+ C CPA A++ E + R I+ C G C ACP +AI Sbjct: 186 CERCVDACPAGALSSEGSEQTGH------RIQINPYLCQGVGTCATACPTEAIH 233 Score = 33.9 bits (76), Expect = 6.7, Method: Composition-based stats. Identities = 6/23 (26%), Positives = 8/23 (34%) Query: 97 DIDMIKCIYCGLCQEACPVDAIV 119 + C C C CP A+ Sbjct: 414 ECQTSDCTLCMSCVAVCPTRALH 436 >gi|332981829|ref|YP_004463270.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Mahella australiensis 50-1 BON] gi|332699507|gb|AEE96448.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Mahella australiensis 50-1 BON] Length = 582 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 5/71 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV----RYDIDMIKCIYCGLCQEACP 114 +CI C+ C + C I G V + I+ + CI CG C EACP Sbjct: 146 DPNKCILCRRCISTCR-NVQEIGVIGATERGFNTMVEPPFKMSINQVPCINCGQCIEACP 204 Query: 115 VDAIVEGPNFE 125 V A+ E + E Sbjct: 205 VGALREKDDTE 215 >gi|332668413|ref|YP_004451201.1| glutamate synthase (NADPH) [Haliscomenobacter hydrossis DSM 1100] gi|332337227|gb|AEE54328.1| Glutamate synthase (NADPH) [Haliscomenobacter hydrossis DSM 1100] Length = 553 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 5/64 (7%) Query: 61 ERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 +RC++C C A E+ + G R Y D+ C C +C E CP AI Sbjct: 483 QRCLSCGNCFECDGCYGACPEEAVIKLGKGNR----YRFDLTLCTGCAVCFEQCPCHAIE 538 Query: 120 EGPN 123 Sbjct: 539 MVDE 542 >gi|320526764|ref|ZP_08027954.1| 4Fe-4S binding domain protein [Solobacterium moorei F0204] gi|320132732|gb|EFW25272.1| 4Fe-4S binding domain protein [Solobacterium moorei F0204] Length = 305 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 33/111 (29%), Gaps = 30/111 (27%) Query: 23 CLRYFFKAKTTINY-----------PFEKGSTS----PRFRGEHALRRYPNGEERCIACK 67 L F K TI PF K + A+ Y + +C++C Sbjct: 185 TLGTLFNWKFTILVTITTLSIFVYRPFCKWICPLGAFYALFNKIAIFNYHVDKNKCVSCG 244 Query: 68 LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C IC ++ CI CG C ACP AI Sbjct: 245 KCARICKMNVDITKNTGDLE---------------CIRCGECITACPTQAI 280 >gi|311104715|ref|YP_003977568.1| electron transport complex, RnfABCDGE type subunit B [Achromobacter xylosoxidans A8] gi|310759404|gb|ADP14853.1| electron transport complex, RnfABCDGE type, B subunit [Achromobacter xylosoxidans A8] Length = 214 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 24/70 (34%), Gaps = 10/70 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L E CI C LC CP AI + + + C C LC Sbjct: 76 LLVARIDEAHCIGCTLCIQACPVDAIVGANK----------HMHTVLADWCTGCDLCVAP 125 Query: 113 CPVDAIVEGP 122 CPVD I P Sbjct: 126 CPVDCIQMVP 135 >gi|253582041|ref|ZP_04859265.1| dihydroorotate dehydrogenase [Fusobacterium varium ATCC 27725] gi|251836390|gb|EES64927.1| dihydroorotate dehydrogenase [Fusobacterium varium ATCC 27725] Length = 365 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 17/89 (19%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 TI Y E+ + E+CI C++C+ +C +AI I Sbjct: 292 ITIKYLAEREKANYITHSPVV------TTEKCIGCRVCKTVCGYKAIEIIEKKAV----- 340 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 I+ KC CG+C CP A+ Sbjct: 341 ------INKEKCFGCGVCVSKCPTKAMDI 363 >gi|254173494|ref|ZP_04880166.1| RNase L inhibitor [Thermococcus sp. AM4] gi|214032186|gb|EEB73016.1| RNase L inhibitor [Thermococcus sp. AM4] Length = 589 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 22/73 (30%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 +R ++C K +C G R I C CG+C Sbjct: 1 MRIAVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYRPVIQEASCTGCGICVHK 60 Query: 113 CPVDAIVEGPNFE 125 CP +AI E Sbjct: 61 CPFNAITIVNLPE 73 >gi|239617512|ref|YP_002940834.1| Cobyrinic acid ac-diamide synthase [Kosmotoga olearia TBF 19.5.1] gi|239506343|gb|ACR79830.1| Cobyrinic acid ac-diamide synthase [Kosmotoga olearia TBF 19.5.1] Length = 287 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 31/98 (31%), Gaps = 24/98 (24%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 + T+ G+ A CIAC +CE C AI Sbjct: 42 HLLMKPETL-------EIHEYIGGKKAEIND-----TCIACGICERTCRFDAI------- 82 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 R Y +D C CG C CP++AI N Sbjct: 83 -----RPGNPYSVDPYACEGCGACVLTCPINAISLNDN 115 >gi|160942429|ref|ZP_02089736.1| hypothetical protein CLOBOL_07313 [Clostridium bolteae ATCC BAA-613] gi|158434681|gb|EDP12448.1| hypothetical protein CLOBOL_07313 [Clostridium bolteae ATCC BAA-613] Length = 568 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 34/106 (32%), Gaps = 8/106 (7%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP----AQAITIESGPRCH 87 T + P A+ R PN +CI C C +C AI + Sbjct: 117 VTHVGYENTKTQYPIDMSSPAIVRDPN---KCILCGDCVRMCDNVQSVNAIDF-AYRGTE 172 Query: 88 DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 +I C+ CG C+ CP AI N E E + Sbjct: 173 ALVTPAFNKNIAETDCVNCGQCRAVCPTGAISINTNIEVIWEALAD 218 >gi|170735207|ref|YP_001774321.1| dihydroorotate dehydrogenase family protein [Burkholderia cenocepacia MC0-3] gi|169821245|gb|ACA95826.1| dihydroorotate dehydrogenase family protein [Burkholderia cenocepacia MC0-3] Length = 437 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 6/63 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117 ++RCI C LC C + ++ DG R +++ +C+ C LC CPV Sbjct: 341 DQDRCIQCGLCHIACED--TSHQAITATKDGVR---HFEVVDSECVGCNLCMHVCPVEQC 395 Query: 118 IVE 120 I Sbjct: 396 ITM 398 >gi|78044647|ref|YP_359587.1| NAD-dependent formate dehydrogenase subunit alpha, selenocysteine-containing [Carboxydothermus hydrogenoformans Z-2901] gi|77996762|gb|ABB15661.1| NAD-dependent formate dehydrogenase, alpha subunit, selenocysteine-containing [Carboxydothermus hydrogenoformans Z-2901] Length = 893 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 28/83 (33%), Gaps = 7/83 (8%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA-ITIESGPRCHDGTRRTVRYD 97 EK +R +CI C C +C ++ T+ YD Sbjct: 128 EKNVYPIEDNNPFIVR----DMNKCILCGKCVRVCDEIVGYSVIDFINRGFKTKVAPPYD 183 Query: 98 --IDMIKCIYCGLCQEACPVDAI 118 + C++CG C CP A+ Sbjct: 184 GTLAESNCVFCGSCVTVCPTGAL 206 >gi|117920613|ref|YP_869805.1| electron transport complex protein RnfB [Shewanella sp. ANA-3] gi|166225087|sp|A0KX80|RNFB_SHESA RecName: Full=Electron transport complex protein rnfB gi|117612945|gb|ABK48399.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella sp. ANA-3] Length = 193 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 25/72 (34%), Gaps = 10/72 (13%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + E+ CI C C CP AI + + + C C LC Sbjct: 102 QVKKVAYIREDECIGCTKCIQACPVDAIIGAGK----------LMHTVLTADCTGCDLCV 151 Query: 111 EACPVDAIVEGP 122 E CPVD I P Sbjct: 152 EPCPVDCIDMIP 163 >gi|312878821|ref|ZP_07738621.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Aminomonas paucivorans DSM 12260] gi|310782112|gb|EFQ22510.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Aminomonas paucivorans DSM 12260] Length = 331 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 7/74 (9%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 A R + RC+ C C CP Q + +R++ +D +C CGL Sbjct: 263 WPEAKYRVQWDDSRCVRCGRCVPRCPFQVFEVTRREE-----KRSMSFD--SSRCRGCGL 315 Query: 109 CQEACPVDAIVEGP 122 C E CP A+ GP Sbjct: 316 CVEVCPAGALRLGP 329 Score = 37.8 bits (86), Expect = 0.52, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 16/73 (21%), Gaps = 4/73 (5%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L + C C G R D +C+ CG C Sbjct: 231 LMHSAGPDALCNCDGCCCYPARVGKRLHCVGLWPEAKYRVQW----DDSRCVRCGRCVPR 286 Query: 113 CPVDAIVEGPNFE 125 CP E Sbjct: 287 CPFQVFEVTRREE 299 >gi|310778346|ref|YP_003966679.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Ilyobacter polytropus DSM 2926] gi|309747669|gb|ADO82331.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Ilyobacter polytropus DSM 2926] Length = 1186 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 31/133 (23%), Positives = 44/133 (33%), Gaps = 29/133 (21%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC--------------PAQAITIESG 83 FE G+T+ RG + E CI C C +C A A + Sbjct: 674 FENGTTAYEKRGIAVNVPHWV-SENCIQCNQCSYVCPHAVIRPFLINEEEMANAPEGLTT 732 Query: 84 PRCHDGTRRTVRYDIDMI--KCIYCGLCQEACPVD---AIVEGP--------NFEFATET 130 + ++Y I + C CG C CP A+V P E A Sbjct: 733 IKPIGKGLDGLQYKIQVSTLDCTGCGSCANVCPAPKGKALVMNPIGEEVAAGEPENANFL 792 Query: 131 RQELYYDKERLLN 143 E+ Y K+ L+ Sbjct: 793 FNEVTY-KDDLMA 804 >gi|301058314|ref|ZP_07199347.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] gi|300447550|gb|EFK11282.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] Length = 1130 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 6/59 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 EERC C C ICP +A++ +D C CG C CP +A Sbjct: 1058 DEERCRGCGRCIEICPYRAVSFHPNGVGGW------HAVVDEALCKGCGNCISVCPSNA 1110 Score = 38.2 bits (87), Expect = 0.45, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 15/32 (46%) Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + +D +C CG C E CP A+ PN Sbjct: 1051 KGFTVVVDEERCRGCGRCIEICPYRAVSFHPN 1082 >gi|258543222|ref|YP_003188655.1| dihydropyrimidine dehydrogenase [Acetobacter pasteurianus IFO 3283-01] gi|256634300|dbj|BAI00276.1| dihydroorotate dehydrogenase [Acetobacter pasteurianus IFO 3283-01] gi|256637360|dbj|BAI03329.1| dihydroorotate dehydrogenase [Acetobacter pasteurianus IFO 3283-03] gi|256640412|dbj|BAI06374.1| dihydroorotate dehydrogenase [Acetobacter pasteurianus IFO 3283-07] gi|256643469|dbj|BAI09424.1| dihydroorotate dehydrogenase [Acetobacter pasteurianus IFO 3283-22] gi|256646524|dbj|BAI12472.1| dihydroorotate dehydrogenase [Acetobacter pasteurianus IFO 3283-26] gi|256649577|dbj|BAI15518.1| dihydroorotate dehydrogenase [Acetobacter pasteurianus IFO 3283-32] gi|256652563|dbj|BAI18497.1| dihydroorotate dehydrogenase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256655621|dbj|BAI21548.1| dihydroorotate dehydrogenase [Acetobacter pasteurianus IFO 3283-12] Length = 422 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 5/70 (7%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP-V 115 ++ C++C LC C + S R Y++ +C+ C LC CP Sbjct: 339 NINQDACVSCGLCHIACEDTSHQAISKTRVDG----ERHYEVIEEECVGCNLCAHVCPID 394 Query: 116 DAIVEGPNFE 125 I P E Sbjct: 395 GCITMEPQPE 404 >gi|304316572|ref|YP_003851717.1| Fe-S cluster domain protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778074|gb|ADL68633.1| Fe-S cluster domain protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 436 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 27/77 (35%), Gaps = 12/77 (15%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 ++RC C C CP +AI + G I KCI CG C Sbjct: 1 MYFHSVTLDKDRCKGCTNCIKRCPTEAIRVRDGKA-----------KIIKEKCIDCGECV 49 Query: 111 EACPVDA-IVEGPNFEF 126 CP A IV + E Sbjct: 50 RVCPYHAKIVVTDDTEM 66 >gi|149190374|ref|ZP_01868646.1| electron transport complex protein RnfB [Vibrio shilonii AK1] gi|148835753|gb|EDL52718.1| electron transport complex protein RnfB [Vibrio shilonii AK1] Length = 193 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 27/78 (34%), Gaps = 10/78 (12%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E+ CI C C CP AI + + + +C C LC CP D Sbjct: 108 FIHEDMCIGCTKCIQACPVDAIVGGTK----------ALHTVIKDECTGCDLCVAPCPTD 157 Query: 117 AIVEGPNFEFATETRQEL 134 I P A + +L Sbjct: 158 CIEMIPVKTTADTWKWQL 175 >gi|19547863|gb|AAK60409.1| hydrogenase [Neocallimastix frontalis] Length = 636 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 3/63 (4%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPV 115 +C+ C C C G G R ++ KC+ CG C + CPV Sbjct: 185 DMNKCVKCGRCIRACHHFQNINILGFINRAGYERVGTPMDRPMNFTKCVECGQCSQVCPV 244 Query: 116 DAI 118 AI Sbjct: 245 GAI 247 >gi|313638814|gb|EFS03887.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Listeria seeligeri FSL S4-171] Length = 906 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 29/93 (31%), Gaps = 16/93 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPA------------QAITIESGPRCHDGTRRTVRYDI 98 AL E C C C +CP A E + + Y I Sbjct: 370 IALEVPEWISENCTMCNECAFVCPHAAIRPILTDEAEMASAPEGFMTRKMRGKDGLEYRI 429 Query: 99 D--MIKCIYCGLCQEACPV--DAIVEGPNFEFA 127 + C C LC E CP A+V P E A Sbjct: 430 QVSPMDCTGCNLCAETCPAKDKALVMKPFEEVA 462 >gi|313634190|gb|EFS00842.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Listeria seeligeri FSL N1-067] Length = 1216 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 29/93 (31%), Gaps = 16/93 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPA------------QAITIESGPRCHDGTRRTVRYDI 98 AL E C C C +CP A E + + Y I Sbjct: 680 IALEVPEWISENCTMCNECAFVCPHAAIRPILTDEAEMASAPEGFMTRKMRGKDGLEYRI 739 Query: 99 D--MIKCIYCGLCQEACPV--DAIVEGPNFEFA 127 + C C LC E CP A+V P E A Sbjct: 740 QVSPMDCTGCNLCAETCPAKDKALVMKPFEEVA 772 >gi|300245949|gb|ADJ94032.1| putative benzoate-degrading protein BamI [Clostridia bacterium enrichment culture clone BF] Length = 365 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 32/98 (32%), Gaps = 2/98 (2%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T +E S H + G + C C +I PR Sbjct: 222 ITKEEAYEIIKLSEEAGLVHFVDNAAEGVKHTCNCCGCA-CWNVGSIKRRKIPRDVLMAT 280 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 +R + D C CG C E CPV+A+ +F E Sbjct: 281 YFMR-ETDEGSCTGCGACVEVCPVNALTMEGDFPVVDE 317 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 26/78 (33%), Gaps = 11/78 (14%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 K PR E C C C +CP A+T+E D Sbjct: 268 KRRKIPRDVLMATYFMRETDEGSCTGCGACVEVCPVNALTMEGDFPVVDEGW-------- 319 Query: 100 MIKCIYCGLCQEACPVDA 117 CI CG+C CP +A Sbjct: 320 ---CIGCGVCIPKCPTEA 334 >gi|282164249|ref|YP_003356634.1| tungsten-containing formylmethanofuran dehydrogenase subunit F [Methanocella paludicola SANAE] gi|282156563|dbj|BAI61651.1| tungsten-containing formylmethanofuran dehydrogenase subunit F [Methanocella paludicola SANAE] Length = 363 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 31/61 (50%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++C C +C CP +AIT + G + + D+D KC +CG+C CP DAI Sbjct: 32 DKCTGCGVCIDACPEEAITRGAVGASGRGKAKVAKIDVDEKKCSFCGVCNIMCPFDAIKL 91 Query: 121 G 121 Sbjct: 92 T 92 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 10/93 (10%) Query: 36 YPFE---KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 P E +G+ RG+ + + E++C C +C +CP AI + + Sbjct: 44 CPEEAITRGAVGASGRGKAKVAKIDVDEKKCSFCGVCNIMCPFDAIKLTVDGQPKLPIIE 103 Query: 93 TVRY-------DIDMIKCIYCGLCQEACPVDAI 118 + ID KC +C LC+E CP DAI Sbjct: 104 QQGFPVLEKKAKIDPEKCTHCVLCEEVCPRDAI 136 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 5/106 (4%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE-----SGPRCHDGTRRTV 94 K + ++ E+C C LCE +CP AI E G + + ++ Sbjct: 98 KLPIIEQQGFPVLEKKAKIDPEKCTHCVLCEEVCPRDAIKREVADVDQGHKASSTMKYSI 157 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140 Y +D KC CG+C EAC I + +L +D+++ Sbjct: 158 DYKLDEDKCTLCGICAEACDAFKIDYKEPTPLTVKKIGKLNFDEKK 203 Score = 41.6 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 2/67 (2%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 Y E++C C +C C A I+ ++ + + D KC C +C E C Sbjct: 157 IDYKLDEDKCTLCGICAEAC--DAFKIDYKEPTPLTVKKIGKLNFDEKKCDACKVCVEIC 214 Query: 114 PVDAIVE 120 P DA+ Sbjct: 215 PEDALQI 221 Score = 40.1 bits (92), Expect = 0.12, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 11/106 (10%) Query: 36 YPFEKGSTSPRFRGEHALRRYPN-GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 P + + E L+ + E+C C C+ ICP +A +E Sbjct: 214 CPEDALQIERKILEEPKLKGKVDIDLEKCTTCSWCQVICPQEAAKVEKLFEGEL------ 267 Query: 95 RYDIDMIKC-IYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139 I+ KC C C E CP +A+ P E A + +L Y+K+ Sbjct: 268 --TINTDKCPAGCSTCVEICPCNALYL-PLVEEAGQKPGKLSYNKD 310 Score = 38.5 bits (88), Expect = 0.34, Method: Composition-based stats. Identities = 27/88 (30%), Positives = 36/88 (40%), Gaps = 5/88 (5%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 K T + L ++C ACK+C ICP A+ IE + + D Sbjct: 182 DYKEPTPLTVKKIGKLNFDE---KKCDACKVCVEICPEDALQIERKILEEPKLK--GKVD 236 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFE 125 ID+ KC C CQ CP +A FE Sbjct: 237 IDLEKCTTCSWCQVICPQEAAKVEKLFE 264 Score = 37.8 bits (86), Expect = 0.59, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 7/81 (8%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93 + P E F GE + C C ICP A+ + P + ++ Sbjct: 250 VICPQEAAKVEKLFEGELTINTDKCPAG----CSTCVEICPCNALYL---PLVEEAGQKP 302 Query: 94 VRYDIDMIKCIYCGLCQEACP 114 + + C+YCG C ACP Sbjct: 303 GKLSYNKDFCMYCGACVTACP 323 >gi|260587118|ref|ZP_05853031.1| glutamate synthase [Blautia hansenii DSM 20583] gi|331082898|ref|ZP_08332019.1| hypothetical protein HMPREF0992_00943 [Lachnospiraceae bacterium 6_1_63FAA] gi|260542608|gb|EEX23177.1| glutamate synthase [Blautia hansenii DSM 20583] gi|330400039|gb|EGG79692.1| hypothetical protein HMPREF0992_00943 [Lachnospiraceae bacterium 6_1_63FAA] Length = 501 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 9/65 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E RCI C++CE C + + D KC+ C C CP A+ Sbjct: 15 NENRCITCRICEQQCANEVHFYDKE---------HKIMKHDETKCVNCQRCVSFCPTRAL 65 Query: 119 VEGPN 123 N Sbjct: 66 KIIKN 70 >gi|166033231|ref|ZP_02236060.1| hypothetical protein DORFOR_02956 [Dorea formicigenerans ATCC 27755] gi|166027588|gb|EDR46345.1| hypothetical protein DORFOR_02956 [Dorea formicigenerans ATCC 27755] Length = 291 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 28/80 (35%), Gaps = 11/80 (13%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 G + CI C +C C A+ +E G ID KC Sbjct: 151 ENDVGIKGGMTVECNHDDCIQCGVCVKACREGALRMEDGKIV-----------IDREKCN 199 Query: 105 YCGLCQEACPVDAIVEGPNF 124 C C ++CP DA V P + Sbjct: 200 NCARCVKSCPTDAWVGEPGY 219 Score = 35.1 bits (79), Expect = 3.1, Method: Composition-based stats. Identities = 9/45 (20%), Positives = 16/45 (35%) Query: 78 ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 G + + + + CI CG+C +AC A+ Sbjct: 144 NNCLKAEENDVGIKGGMTVECNHDDCIQCGVCVKACREGALRMED 188 >gi|145299425|ref|YP_001142266.1| electron transport complex protein RnfB [Aeromonas salmonicida subsp. salmonicida A449] gi|166225079|sp|A4SNP6|RNFB_AERS4 RecName: Full=Electron transport complex protein rnfB gi|142852197|gb|ABO90518.1| electron transport complex protein RnfB [Aeromonas salmonicida subsp. salmonicida A449] Length = 187 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 10/72 (13%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + E++CI C C CP AI + + + +C C LC Sbjct: 103 PVKKVAFIHEDQCIGCTKCIQACPVDAIVGATK----------AMHTVITDECTGCDLCV 152 Query: 111 EACPVDAIVEGP 122 + CP D I P Sbjct: 153 DPCPTDCIEMIP 164 >gi|118776473|gb|ABL14244.1| dihydroprimidine dehydrogenase [Bacillus fordii] Length = 426 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 21/63 (33%), Gaps = 4/63 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117 + CI C C C + +G +C+ C LC CPV+ A Sbjct: 338 NNDICINCNKCHIACEDTSHQCIDMLTDENGHGYLKV---REEECVGCNLCSIVCPVEGA 394 Query: 118 IVE 120 I Sbjct: 395 IDM 397 >gi|172065004|ref|YP_001815716.1| dihydroorotate dehydrogenase family protein [Burkholderia ambifaria MC40-6] gi|171997246|gb|ACB68163.1| dihydroorotate dehydrogenase family protein [Burkholderia ambifaria MC40-6] Length = 435 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 6/63 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117 ++RCI C LC C + + + +++ +C+ C LC CPV Sbjct: 341 DQDRCIQCGLCHIACEDTSHQAITAQKDGV-----RHFEVVDAECVGCNLCMHVCPVEQC 395 Query: 118 IVE 120 I Sbjct: 396 ITM 398 >gi|158319328|ref|YP_001511835.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs] gi|158139527|gb|ABW17839.1| NADH dehydrogenase (quinone) [Alkaliphilus oremlandii OhILAs] Length = 582 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 10/66 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L Y +E+CI C LC CP +AI+ E+ + I+ CI CG C E Sbjct: 524 LLEYNILDEKCIGCGLCRRNCPVEAISGETKK----------VHSINQELCIQCGKCYEV 573 Query: 113 CPVDAI 118 C A+ Sbjct: 574 CKFGAV 579 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 16/40 (40%), Positives = 20/40 (50%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 I R + Y+I KCI CGLC+ CPV+AI Sbjct: 510 HIHRKKCPAKQCRNLLEYNILDEKCIGCGLCRRNCPVEAI 549 >gi|127512995|ref|YP_001094192.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella loihica PV-4] gi|166225086|sp|A3QEN5|RNFB_SHELP RecName: Full=Electron transport complex protein rnfB gi|126638290|gb|ABO23933.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella loihica PV-4] Length = 189 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 22/64 (34%), Gaps = 10/64 (15%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 CI C C CP AI + + C C LC E CPVD I Sbjct: 113 ECIGCTKCIQACPVDAILGTGKQ----------MHTVITDYCTGCDLCVEPCPVDCIDMI 162 Query: 122 PNFE 125 P E Sbjct: 163 PVAE 166 Score = 34.7 bits (78), Expect = 4.7, Method: Composition-based stats. Identities = 12/24 (50%), Positives = 15/24 (62%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEG 121 I +CI C C +ACPVDAI+ Sbjct: 109 IREAECIGCTKCIQACPVDAILGT 132 >gi|23016779|ref|ZP_00056531.1| COG3383: Uncharacterized anaerobic dehydrogenase [Magnetospirillum magnetotacticum MS-1] Length = 893 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 5/62 (8%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACPVDAI 118 CI C LC C + G + +D + C+ CG C +ACP A+ Sbjct: 142 CIHCALCLRACR-DVQVNDVIGMSGRGAHSRISFDFADPMGASSCVGCGECVQACPTGAL 200 Query: 119 VE 120 Sbjct: 201 AL 202 >gi|332289788|ref|YP_004420640.1| electron transport complex protein RnfC [Gallibacterium anatis UMN179] gi|330432684|gb|AEC17743.1| electron transport complex protein RnfC [Gallibacterium anatis UMN179] Length = 816 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 35/104 (33%), Gaps = 5/104 (4%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 CI C C CP + + + ++ CI CG+C CP I Sbjct: 377 RNCIRCSACSDHCPIK-LMPQQLYWFARSEDHEKSEQYNLKDCIECGVCAYVCP-SNIPL 434 Query: 121 GPNFEFATETRQELYYDKERLLNNGD-RWESEIVRNIVTDSPYR 163 F EL K +L R+E++ R + + R Sbjct: 435 IQYFRQEKAKIAELKL-KAKLAEEAKVRFEAKQAR-MEREKQER 476 >gi|328952548|ref|YP_004369882.1| Glutamate synthase (NADPH) [Desulfobacca acetoxidans DSM 11109] gi|328452872|gb|AEB08701.1| Glutamate synthase (NADPH) [Desulfobacca acetoxidans DSM 11109] Length = 1503 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+C+ C C CP A + DID +C CG C ACP I Sbjct: 1422 DREKCVVCMTCARTCPFGAPKVAEDG----------FIDIDPAECHGCGNCASACPRRLI 1471 Query: 119 VEGP 122 Sbjct: 1472 QVQH 1475 Score = 35.5 bits (80), Expect = 2.9, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 21/75 (28%), Gaps = 4/75 (5%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG----PRCHDGTRRTVRYDID 99 FR E LR C AC C +CP + R Sbjct: 103 PGHFRLEIELRPRYVEVNICTACGECAKVCPVTLPSPFDEGLGLRRAAYRHFPQAIPSAY 162 Query: 100 MIKCIYCGLCQEACP 114 I+ + C ACP Sbjct: 163 AIEKLDRAPCVRACP 177 >gi|262165720|ref|ZP_06033457.1| iron-sulfur cluster-binding protein [Vibrio mimicus VM223] gi|262025436|gb|EEY44104.1| iron-sulfur cluster-binding protein [Vibrio mimicus VM223] Length = 553 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 9/75 (12%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C A+CP +A+ C+ CGLC +ACP + Sbjct: 418 SDCTLCMSCVAVCPTRALHPAGDSPA---------LRFIEQDCVQCGLCVKACPEQVLSA 468 Query: 121 GPNFEFATETRQELY 135 P + RQ + Sbjct: 469 TPQLNWNKAARQGVV 483 Score = 41.2 bits (95), Expect = 0.053, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 14/81 (17%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 C+ C CPA A++ E + R I+ C G C ACP +AI + Sbjct: 186 CERCVDACPAGALSSEGSDQTGH------RIQINPYLCQGVGTCATACPTEAIH----YA 235 Query: 126 FA-TETRQELYYDKERLLNNG 145 Q+ ERLL N Sbjct: 236 LPNPTDTQKFI---ERLLANY 253 Score = 33.9 bits (76), Expect = 6.9, Method: Composition-based stats. Identities = 6/23 (26%), Positives = 8/23 (34%) Query: 97 DIDMIKCIYCGLCQEACPVDAIV 119 + C C C CP A+ Sbjct: 414 ECQTSDCTLCMSCVAVCPTRALH 436 >gi|258622882|ref|ZP_05717898.1| iron-sulfur cluster-binding protein [Vibrio mimicus VM573] gi|258584821|gb|EEW09554.1| iron-sulfur cluster-binding protein [Vibrio mimicus VM573] Length = 553 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 9/75 (12%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C A+CP +A+ C+ CGLC +ACP + Sbjct: 418 SDCTLCMSCVAVCPTRALHPAGDSPA---------LRFIEQDCVQCGLCVKACPEQVLSA 468 Query: 121 GPNFEFATETRQELY 135 P + RQ + Sbjct: 469 TPQLNWNKAARQGVV 483 Score = 41.2 bits (95), Expect = 0.052, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 14/81 (17%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 C+ C CPA A++ E + R I+ C G C ACP +AI + Sbjct: 186 CERCVDACPAGALSSEGSDQTGH------RIQINPYLCQGVGTCATACPTEAIH----YA 235 Query: 126 FA-TETRQELYYDKERLLNNG 145 Q+ ERLL N Sbjct: 236 LPNPTDTQKFI---ERLLANY 253 Score = 33.9 bits (76), Expect = 8.1, Method: Composition-based stats. Identities = 6/23 (26%), Positives = 8/23 (34%) Query: 97 DIDMIKCIYCGLCQEACPVDAIV 119 + C C C CP A+ Sbjct: 414 ECKTSDCTLCMSCVAVCPTRALH 436 >gi|291286049|ref|YP_003502865.1| ferredoxin-dependent glutamate synthase [Denitrovibrio acetiphilus DSM 12809] gi|290883209|gb|ADD66909.1| ferredoxin-dependent glutamate synthase [Denitrovibrio acetiphilus DSM 12809] Length = 907 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 32/113 (28%), Gaps = 21/113 (18%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEER-CIACKLCEAICPA---------QAITIESGPRC 86 P EKG + + + R C+ C C C T+E Sbjct: 18 PDEKGIFAQGAKYWVKVTDDIEEPGRGCVHCSTCVESCTHNIKEPGAGHGVFTMEERYYD 77 Query: 87 HDGTRR-----------TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 G R I+ +C C C + CP AI N ++ Sbjct: 78 DGGHRVSPDSSDEINLIEKILWINPDECCNCKRCVKMCPQRAIKVYDNPDYHD 130 >gi|222445295|ref|ZP_03607810.1| hypothetical protein METSMIALI_00923 [Methanobrevibacter smithii DSM 2375] gi|261350144|ref|ZP_05975561.1| polyferredoxin protein MvhB [Methanobrevibacter smithii DSM 2374] gi|222434860|gb|EEE42025.1| hypothetical protein METSMIALI_00923 [Methanobrevibacter smithii DSM 2375] gi|288860930|gb|EFC93228.1| polyferredoxin protein MvhB [Methanobrevibacter smithii DSM 2374] Length = 413 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 1/56 (1%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C LC CP A+ + + + +D+++ KCI C C EACP D I Sbjct: 177 CIKCGLCSQTCPWNAVF-IAEKKPAKRAKTINAFDLELSKCIGCNTCVEACPGDFI 231 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 1/65 (1%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTV-RYDIDMIKCIYCGLCQEACPVDAI 118 CI C C A+C A+++ S + DG T R + + KC CG C EACP + + Sbjct: 322 FASCIRCGACAAVCSNDALSVGSIEKVIDGETVTRDRIEFNPYKCNECGDCIEACPYNML 381 Query: 119 VEGPN 123 N Sbjct: 382 HATGN 386 Score = 40.9 bits (94), Expect = 0.066, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 1/63 (1%) Query: 62 RCIACKLCEAICPAQAITIES-GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C+ C+ C ICP I I + + I + C+ CG C + CPV AI Sbjct: 104 FCVMCQKCVDICPVDVIGIPGIVEPKGEVIDLDGKGPIYINDCVGCGTCVDPCPVSAITL 163 Query: 121 GPN 123 Sbjct: 164 DEI 166 Score = 38.2 bits (87), Expect = 0.41, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 19/61 (31%), Gaps = 11/61 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +C C C CP + + M C CG C +ACP A+ Sbjct: 362 NPYKCNECGDCIEACPYNMLHATGNEKFPI-----------MGFCTLCGQCIDACPKHAL 410 Query: 119 V 119 Sbjct: 411 Y 411 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 4/65 (6%) Query: 62 RCIACK---LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C C +CP A+ +E+ G +R + C CG C+EACP D I Sbjct: 33 HCDTCGGEPKCADVCPEGALKVETYSIAE-GAEEQIRLVFNSTLCNSCGKCEEACPQDTI 91 Query: 119 VEGPN 123 N Sbjct: 92 KLTGN 96 Score = 35.5 bits (80), Expect = 2.9, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 25/90 (27%), Gaps = 11/90 (12%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 K T G R C +C CE CP I + Sbjct: 53 KVETYSIAEGAEEQIRLVFNSTLCNSCGKCEEACPQDTIKLTGNDLMEV----------- 101 Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 C+ C C + CPVD I E E Sbjct: 102 EGFCVMCQKCVDICPVDVIGIPGIVEPKGE 131 Score = 35.5 bits (80), Expect = 2.9, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 9/60 (15%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C+ C C CP AIT++ I CI CGLC + CP +A+ Sbjct: 144 NDCVGCGTCVDPCPVSAITLDE---------IGGTISIADDVCIKCGLCSQTCPWNAVFI 194 Score = 35.1 bits (79), Expect = 3.1, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 18/56 (32%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 E+C C CP +AI + + + CI CG C C Sbjct: 280 YDAEKCDFVGACANKCPTEAIRVVTKTGMLCPALEETDAEPSFASCIRCGACAAVC 335 Score = 33.9 bits (76), Expect = 7.4, Method: Composition-based stats. Identities = 10/24 (41%), Positives = 12/24 (50%) Query: 99 DMIKCIYCGLCQEACPVDAIVEGP 122 + CI CG C+ CP AI P Sbjct: 5 NEDGCIRCGACEGTCPTSAIDVTP 28 >gi|212711765|ref|ZP_03319893.1| hypothetical protein PROVALCAL_02840 [Providencia alcalifaciens DSM 30120] gi|212685287|gb|EEB44815.1| hypothetical protein PROVALCAL_02840 [Providencia alcalifaciens DSM 30120] Length = 636 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 33/107 (30%), Gaps = 11/107 (10%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C LC CPA + + G ++ CI CG C CP I Sbjct: 378 CIRCGLCVDACPAS-LLPQQLYWFSKGKEHEKAQKHNLFDCIECGACAYVCP-SNIPLVQ 435 Query: 123 NF--------EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161 + E E R+ K+R R E E + Sbjct: 436 YYRQEKAEIREIDQEERRS-IEAKQRFEAKQQRMEREKLAREERHKK 481 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 9/15 (60%), Positives = 10/15 (66%) Query: 100 MIKCIYCGLCQEACP 114 CI CGLC +ACP Sbjct: 375 EEACIRCGLCVDACP 389 >gi|188588987|ref|YP_001919988.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum E3 str. Alaska E43] gi|188499268|gb|ACD52404.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum E3 str. Alaska E43] Length = 362 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 26/63 (41%), Gaps = 12/63 (19%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ CI C +C+ C AI + + ID KC CGLC CP +A+ Sbjct: 310 NQDACIKCGICKTSCVYDAIEVSNE------------LIIDSKKCFGCGLCVTRCPKNAL 357 Query: 119 VEG 121 Sbjct: 358 SMQ 360 >gi|167470482|ref|ZP_02335186.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia pestis FV-1] Length = 190 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 24/78 (30%), Gaps = 10/78 (12%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C C CP AI + + + C C LC CP D Sbjct: 113 FIDEANCIGCTKCIQACPVDAIIGAT----------RAMHTVLSDLCTGCDLCVAPCPTD 162 Query: 117 AIVEGPNFEFATETRQEL 134 I P + +L Sbjct: 163 CIEMIPVATTTANWKWDL 180 >gi|218778106|ref|YP_002429424.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfatibacillum alkenivorans AK-01] gi|218759490|gb|ACL01956.1| Heterodisulfide reductase, subunit A-like protein [Desulfatibacillum alkenivorans AK-01] Length = 1012 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 37/100 (37%), Gaps = 27/100 (27%) Query: 57 PNGEERCIACKLCEAICPAQAITIE-------SGPRCHDGTRRTVRYDIDMIKCIY---- 105 E+CIAC C A CP + +++ ID +C+ Sbjct: 103 YVDTEKCIACGQCAAKCPKKVTDEYNQGLIKRKAIYVPYPQAVPLKFAIDPEQCLKLTKD 162 Query: 106 -CGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNN 144 CG C++ CP AI LY DKE++L+ Sbjct: 163 KCGNCEKVCPAGAI---------------LYDDKEKILDI 187 Score = 40.9 bits (94), Expect = 0.056, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 6/63 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C +C +C + CP A ++ +I+ + C CG C +C A+ Sbjct: 939 DPRFCSSCMVCVSTCPYSAPSMVKEGPNAGKA------EINPVLCKGCGQCVASCRSGAL 992 Query: 119 VEG 121 Sbjct: 993 HLQ 995 >gi|86156647|ref|YP_463432.1| pyruvate-ferredoxin (flavodoxin) oxidoreductase [Anaeromyxobacter dehalogenans 2CP-C] gi|85773158|gb|ABC79995.1| pyruvate-ferredoxin (flavodoxin) oxidoreductase [Anaeromyxobacter dehalogenans 2CP-C] Length = 1200 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 31/130 (23%), Gaps = 27/130 (20%) Query: 31 KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------Q 76 +P TS + AL CI C C ICP Sbjct: 668 PVDGTWP---TGTSKWEKRSIALEIPVWEPSLCIQCNKCALICPHAAIRPKFYGPEVLGG 724 Query: 77 AITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACP--------VDAIVEGPNFEF 126 A + +Y + C C LC E CP AI Sbjct: 725 APQGFLAMDYKSADVKGAKYSLQVAPDDCTGCTLCVEICPAESKTEKGKKAINMADAMPL 784 Query: 127 ATETRQELYY 136 + R + Sbjct: 785 KEKERANFEF 794 >gi|46580233|ref|YP_011041.1| glutamate synthase, iron-sulfur cluster-binding subunit [Desulfovibrio vulgaris str. Hildenborough] gi|120602382|ref|YP_966782.1| glutamate synthase (NADPH) [Desulfovibrio vulgaris DP4] gi|46449650|gb|AAS96300.1| glutamate synthase, iron-sulfur cluster-binding subunit, putative [Desulfovibrio vulgaris str. Hildenborough] gi|120562611|gb|ABM28355.1| glutamate synthase (NADPH) GltB2 subunit [Desulfovibrio vulgaris DP4] gi|311233781|gb|ADP86635.1| Glutamate synthase (NADPH) [Desulfovibrio vulgaris RCH1] Length = 507 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 24/79 (30%), Gaps = 13/79 (16%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 S F RCI C++C C + + R + D Sbjct: 5 PISQHFNDFVV----ERERARCIDCEVCVRQCSYGVHFWDEARK---------RVEHDSS 51 Query: 102 KCIYCGLCQEACPVDAIVE 120 KC+ C C CP D + Sbjct: 52 KCVGCHRCAAMCPTDCLTI 70 >gi|71907126|ref|YP_284713.1| electron transport complex, RnfABCDGE type, C subunit [Dechloromonas aromatica RCB] gi|71846747|gb|AAZ46243.1| Electron transport complex, RnfABCDGE type, C subunit [Dechloromonas aromatica RCB] Length = 503 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 28/87 (32%), Gaps = 7/87 (8%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 CI C C CP + +E R G + CI CG C CP I Sbjct: 371 PCIRCGNCTKACPMGLLPLEMAARIRVGDLEGAE-AFALSDCISCGCCAYVCPSH-IPLV 428 Query: 122 PNF-----EFATETRQELYYDKERLLN 143 F E R +L D + L Sbjct: 429 QYFSHAKGELTAAERTKLRTDATKRLA 455 >gi|28212003|ref|NP_782947.1| periplasmic [Fe] hydrogenase 1 [Clostridium tetani E88] gi|28204446|gb|AAO36884.1| periplasmic [Fe] hydrogenase 1 [Clostridium tetani E88] Length = 494 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 7/69 (10%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-------IDMIKCIYCGLC 109 E C C LCE+ CP AI P ++ + I+ CI CG C Sbjct: 135 YINHETCKECGLCESACPYNAIAEVMRPCRRACPTGALQMNLEDNKATINKEDCINCGSC 194 Query: 110 QEACPVDAI 118 CP AI Sbjct: 195 MSVCPFGAI 203 >gi|150019644|ref|YP_001311898.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149906109|gb|ABR36942.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Clostridium beijerinckii NCIMB 8052] Length = 368 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 11/59 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 ++C+ C +C C AI++ I+ KC+ CG C CP+DA++ Sbjct: 195 DKCVGCGMCAKNCAHSAISLTDKKAL-----------INHSKCVGCGRCIGICPMDAVM 242 >gi|332296157|ref|YP_004438080.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Thermodesulfobium narugense DSM 14796] gi|332179260|gb|AEE14949.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Thermodesulfobium narugense DSM 14796] Length = 92 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 7/62 (11%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++C C +C +C AIT + R ID C CG+C ACP AI Sbjct: 21 NPDKCSGCGVCLPLCSYSAITWIE-------YKGKKRAHIDPALCTGCGVCVAACPSRAI 73 Query: 119 VE 120 + Sbjct: 74 IL 75 >gi|323669543|gb|ABI30020.2| CarE [Acetobacterium woodii] Length = 396 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 12/58 (20%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+CI C C+ CP AITIE+ + C CG C + CP +AI Sbjct: 8 EKCIGCSKCQKSCPFDAITIENKIA------------VIGDACTNCGTCIDVCPTEAI 53 Score = 35.5 bits (80), Expect = 2.4, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 14/25 (56%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 + KCI C CQ++CP DAI Sbjct: 5 VIEEKCIGCSKCQKSCPFDAITIEN 29 >gi|296446422|ref|ZP_06888366.1| formate dehydrogenase, alpha subunit [Methylosinus trichosporium OB3b] gi|296256057|gb|EFH03140.1| formate dehydrogenase, alpha subunit [Methylosinus trichosporium OB3b] Length = 958 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 29/103 (28%), Gaps = 10/103 (9%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ES 82 + F P K + + +CI C C C T Sbjct: 147 HVFARNHGRINPEWKPKDTSN-------PYFTYDPSKCIVCNRCVRACAETQGTFALTID 199 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 G V +C+ CG C +ACP ++E E Sbjct: 200 GRGFDSRVSPGVNEAYFESECVSCGACVQACPTATLIETSVIE 242 >gi|262165247|ref|ZP_06032984.1| electron transport complex protein RnfC [Vibrio mimicus VM223] gi|262024963|gb|EEY43631.1| electron transport complex protein RnfC [Vibrio mimicus VM223] Length = 825 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 28/109 (25%), Gaps = 20/109 (18%) Query: 13 LKEFVGA---FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69 L + L + P K + + L + CI C C Sbjct: 333 LPRLIMGGPMMGFTLPH-------AQVPITKTANCILAPTRNELTNSDHEMA-CIRCGQC 384 Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMI----KCIYCGLCQEACP 114 A + P+ + +D CI CG C CP Sbjct: 385 A-----DACPVSLLPQQLQWHAKAQEFDKCEELNLKDCIECGACAYVCP 428 Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats. Identities = 9/17 (52%), Positives = 11/17 (64%) Query: 99 DMIKCIYCGLCQEACPV 115 + CI CG C +ACPV Sbjct: 374 HEMACIRCGQCADACPV 390 >gi|262171980|ref|ZP_06039658.1| electron transport complex protein RnfC [Vibrio mimicus MB-451] gi|261893056|gb|EEY39042.1| electron transport complex protein RnfC [Vibrio mimicus MB-451] Length = 867 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 28/109 (25%), Gaps = 20/109 (18%) Query: 13 LKEFVGA---FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69 L + L + P K + + L + CI C C Sbjct: 333 LPRLIMGGPMMGFTLPH-------AQVPITKTANCILAPTRNELTNSDHEMA-CIRCGQC 384 Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMI----KCIYCGLCQEACP 114 A + P+ + +D CI CG C CP Sbjct: 385 A-----DACPVSLLPQQLQWHAKAQEFDKCEELNLKDCIECGACAYVCP 428 Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats. Identities = 9/17 (52%), Positives = 11/17 (64%) Query: 99 DMIKCIYCGLCQEACPV 115 + CI CG C +ACPV Sbjct: 374 HEMACIRCGQCADACPV 390 >gi|261211947|ref|ZP_05926233.1| electron transport complex protein RnfC [Vibrio sp. RC341] gi|260838555|gb|EEX65206.1| electron transport complex protein RnfC [Vibrio sp. RC341] Length = 825 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/109 (17%), Positives = 28/109 (25%), Gaps = 20/109 (18%) Query: 13 LKEFVGA---FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69 L + L + P K + + L + CI C C Sbjct: 333 LPRLIMGGPMMGFTLPH-------AQVPITKTANCILAPTRNELTNSDHEMA-CIRCGQC 384 Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMI----KCIYCGLCQEACP 114 A + P+ + +D CI CG C CP Sbjct: 385 A-----DACPVSLLPQQLQWHAKAQEFDKCEELNLKDCIECGACAYVCP 428 Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats. Identities = 9/17 (52%), Positives = 11/17 (64%) Query: 99 DMIKCIYCGLCQEACPV 115 + CI CG C +ACPV Sbjct: 374 HEMACIRCGQCADACPV 390 >gi|118444335|ref|YP_877304.1| glycerol dehydratase activator [Clostridium novyi NT] gi|118134791|gb|ABK61835.1| glycerol dehydratase activator [Clostridium novyi NT] Length = 304 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 12/80 (15%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + C+ C C +C + AI + S R ID +CI CG C E CP +A Sbjct: 54 YNKSLCLECGTCNEVCKSSAINLNSLNR------------IDRERCIACGKCVEHCPTEA 101 Query: 118 IVEGPNFEFATETRQELYYD 137 +V ET ++L D Sbjct: 102 LVMSGESVSVDETIEKLKKD 121 >gi|92118585|ref|YP_578314.1| 4Fe-4S ferredoxin, iron-sulfur binding [Nitrobacter hamburgensis X14] gi|91801479|gb|ABE63854.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Nitrobacter hamburgensis X14] Length = 674 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 23/68 (33%), Gaps = 9/68 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C C C + CP A+ + C+ CGLCQ CP I Sbjct: 517 DVEGCTLCLSCVSACPTGALYDDPE---------RPVLRFTEDACVQCGLCQATCPEKVI 567 Query: 119 VEGPNFEF 126 P +F Sbjct: 568 KLVPQIDF 575 Score = 41.2 bits (95), Expect = 0.046, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 11/54 (20%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + C C +CP AIT + I+ C CG C ACP A Sbjct: 282 VGCHRCLDLCPTSAITPDGD-----------HVAINAEICAGCGQCAAACPTGA 324 >gi|56476992|ref|YP_158581.1| benzoyl-CoA oxygenase component A [Aromatoleum aromaticum EbN1] gi|56313035|emb|CAI07680.1| Benzoyl-CoA oxygenase component A [Aromatoleum aromaticum EbN1] Length = 416 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 11/60 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C CE CP AIT ++ + Y ++ C C C CP AI Sbjct: 16 DPEICIRCNTCEETCPIDAITHDN-----------LNYVVNFDICNGCLACVPPCPTGAI 64 Score = 35.5 bits (80), Expect = 2.5, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 16/39 (41%) Query: 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 ++ ID CI C C+E CP+DAI Sbjct: 1 MNAPVEHAIAKQHLIDPEICIRCNTCEETCPIDAITHDN 39 >gi|219666776|ref|YP_002457211.1| reductive dehalogenase [Desulfitobacterium hafniense DCB-2] gi|19421900|gb|AAL87788.1|AF403184_13 reductive dehalogenase [Desulfitobacterium hafniense DCB-2] gi|219537036|gb|ACL18775.1| reductive dehalogenase [Desulfitobacterium hafniense DCB-2] Length = 488 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 33/100 (33%), Gaps = 21/100 (21%) Query: 25 RYFFKAKT---TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 R F+ K T + P + C C C CPA+AIT + Sbjct: 339 RMGFRNKVAAVTTDLPLVPDKP-----------IDFGMLDFCRVCMKCAENCPAEAITQD 387 Query: 82 SGPRCHDGT-------RRTVRYDIDMIKCIYCGLCQEACP 114 P +G ++ + + + CG C + CP Sbjct: 388 KDPVAFNGYLRWNTDAKKCAEFRTGNEEGVNCGRCVKVCP 427 >gi|291521598|emb|CBK79891.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Coprococcus catus GD/7] Length = 594 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 37/97 (38%), Gaps = 15/97 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 LRY F+ + + +K AL Y ++C C LC CP AI+ Sbjct: 511 TLRY-FRDEYIAHIVDKKCPAGVC----KALLSYKIDADKCKGCTLCARNCPNGAISG-- 563 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + + ID KC+ CG C E C AI Sbjct: 564 --------KLKEPHVIDQSKCLKCGACMEKCRFGAIY 592 >gi|253702709|ref|YP_003023898.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Geobacter sp. M21] gi|251777559|gb|ACT20140.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Geobacter sp. M21] Length = 1238 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 34/113 (30%), Gaps = 20/113 (17%) Query: 31 KTTINYPFEKGSTS--PRFRGEHALRRYPNGEERCIACKLCEAICPA------------- 75 + P S + A+ +E CI C C ICP Sbjct: 659 PVSAFSPDGVFPFSTARYEKRGVAINVPEWIKENCIQCNQCSYICPHATIRPFLATEEEL 718 Query: 76 -QAITIESGPRCHDGTRRTVRYDI--DMIKCIYCGLCQEACP--VDAIVEGPN 123 A + + + I + C+ CG C + CP V A+V P Sbjct: 719 SGAPESFETIPANAKEIKGHGFRIQVYALDCMGCGNCADICPAKVSALVMKPI 771 >gi|239905422|ref|YP_002952161.1| putative NAD-reducing hydrogenase subunit [Desulfovibrio magneticus RS-1] gi|239795286|dbj|BAH74275.1| putative NAD-reducing hydrogenase subunit [Desulfovibrio magneticus RS-1] Length = 629 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 28/97 (28%), Positives = 33/97 (34%), Gaps = 17/97 (17%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGE-HALRRYPNGEERCIACKLCEAICPAQAITIE 81 L++F E G AL RC C+LC CPA AIT E Sbjct: 546 TLKHF------RKDYEEHVFEKRCSAGRCKALAMPTINAARCKGCRLCVKACPAGAITGE 599 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + ID CI CG C AC A+ Sbjct: 600 KKQP----------HVIDETLCIKCGACATACKFGAV 626 >gi|210616158|ref|ZP_03290961.1| hypothetical protein CLONEX_03180 [Clostridium nexile DSM 1787] gi|210149920|gb|EEA80929.1| hypothetical protein CLONEX_03180 [Clostridium nexile DSM 1787] Length = 571 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 12/74 (16%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C C C +AI++ + I CI+CG C E CP +A Sbjct: 10 NCRHCYKCVRNCSVKAISVRNEQAH-----------IIREACIHCGHCLEVCPQNAKTFS 58 Query: 122 PNFE-FATETRQEL 134 + E RQ + Sbjct: 59 SDMERVKGYLRQGM 72 >gi|197285164|ref|YP_002151036.1| electron transport complex protein [Proteus mirabilis HI4320] gi|227355594|ref|ZP_03839989.1| NADH dehydrogenase (ubiquinone) [Proteus mirabilis ATCC 29906] gi|194682651|emb|CAR42772.1| electron transport complex protein [Proteus mirabilis HI4320] gi|227164390|gb|EEI49279.1| NADH dehydrogenase (ubiquinone) [Proteus mirabilis ATCC 29906] Length = 208 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 26/76 (34%), Gaps = 10/76 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ CI C C CP AI + + I C C LC CP D I Sbjct: 113 DEDNCIGCTKCIQACPVDAIVGAT----------RAMHTIIEDLCTGCDLCVPPCPTDCI 162 Query: 119 VEGPNFEFATETRQEL 134 P + + +L Sbjct: 163 TLVPVKMTTSNWKWDL 178 Score = 35.5 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C C +ACPVDAI Sbjct: 112 IDEDNCIGCTKCIQACPVDAI 132 >gi|89899039|ref|YP_521510.1| FAD/NAD(P)-binding oxidoreductase [Rhodoferax ferrireducens T118] gi|89343776|gb|ABD67979.1| benzoyl-CoA oxygenase, component A [Rhodoferax ferrireducens T118] Length = 423 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 11/68 (16%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 A++++ E CI C CEAICP AIT ++ Y +D KC C C Sbjct: 7 QAIKQHLIDPEICIRCNTCEAICPVAAITHDT-----------RNYVVDADKCNLCMDCI 55 Query: 111 EACPVDAI 118 CP +I Sbjct: 56 SPCPTGSI 63 Score = 37.4 bits (85), Expect = 0.66, Method: Composition-based stats. Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%) Query: 98 IDMIKCIYCGLCQEACPVDAI-VEGPNF 124 ID CI C C+ CPV AI + N+ Sbjct: 14 IDPEICIRCNTCEAICPVAAITHDTRNY 41 >gi|85860877|ref|YP_463079.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus aciditrophicus SB] gi|85723968|gb|ABC78911.1| NADH:ubiquinone oxidoreductase, NADH-binding subunit [Syntrophus aciditrophicus SB] Length = 642 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 26/64 (40%), Gaps = 10/64 (15%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 L Y E+C AC+LC CPA AI + ID KC CG C Sbjct: 557 KELIAYVIDPEQCRACQLCVKKCPAGAIDGGKD----------LVSIIDQEKCTKCGTCF 606 Query: 111 EACP 114 E CP Sbjct: 607 EVCP 610 Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 19/45 (42%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 I+ + + Y ID +C C LC + CP AI G + Sbjct: 545 HIKEKRCPALSCKELIAYVIDPEQCRACQLCVKKCPAGAIDGGKD 589 >gi|82703818|ref|YP_413384.1| electron transport complex, RnfABCDGE type, B subunit [Nitrosospira multiformis ATCC 25196] gi|82411883|gb|ABB75992.1| electron transport complex, RnfABCDGE type, B subunit [Nitrosospira multiformis ATCC 25196] Length = 259 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 28/82 (34%), Gaps = 10/82 (12%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E + E+ CI C +C +CP AI + + + Sbjct: 62 EPLPLNTAHGVFKTKEVALIDEQACIGCTVCIQVCPVDAIVGAARQ----------MHTV 111 Query: 99 DMIKCIYCGLCQEACPVDAIVE 120 +C C LC E CPVD I Sbjct: 112 ISGECTGCSLCLEPCPVDCIQM 133 >gi|45359255|ref|NP_988812.1| polyferredoxin, associated with F420-non-reducing hydrogenase [Methanococcus maripaludis S2] gi|45048130|emb|CAF31248.1| polyferredoxin, associated with F420-non-reducing hydrogenase [Methanococcus maripaludis S2] Length = 383 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 28/75 (37%), Gaps = 1/75 (1%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E+C C C CP AI + + +++ + CI CG C CP A+ Sbjct: 254 EKCAYCGPCAIKCPTGAIKVVNPKGLELPSKKKTEKANEFAMCIRCGACAMKCPTGALKM 313 Query: 121 GPN-FEFATETRQEL 134 G E R E Sbjct: 314 GKMVHEGKEYARVEF 328 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++CI C +C CP AI +G + + ++ +CI C C EACP I Sbjct: 144 DTDKCIYCTVCSQTCPWNAIF-VAGKLPQKRQKTIKSFTVNEEECIGCEKCVEACPGSMI 202 Score = 42.4 bits (98), Expect = 0.023, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 3/66 (4%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 N CI C C CP A+ + + + R + C CG C + CP Sbjct: 291 NEFAMCIRCGACAMKCPTGALKM---GKMVHEGKEYARVEFSPALCNECGECVDVCPQKT 347 Query: 118 IVEGPN 123 + + Sbjct: 348 LELTGD 353 Score = 38.5 bits (88), Expect = 0.32, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 1/69 (1%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK-CIYCGLCQEACP 114 +P + C+ C+ C ICPA+ I++ + I + K C+ CG+C CP Sbjct: 72 FPYSKGHCVLCEKCVEICPAEIISLPGKAEKPKKEIIIPQEPIAVTKDCVACGVCVPECP 131 Query: 115 VDAIVEGPN 123 VDAI Sbjct: 132 VDAISIEDI 140 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 12/59 (20%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C+AC +C CP AI+IE ID KCIYC +C + CP +AI Sbjct: 118 KDCVACGVCVPECPVDAISIEDIAV------------IDTDKCIYCTVCSQTCPWNAIF 164 Score = 35.1 bits (79), Expect = 3.1, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 11/89 (12%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 ++ + EE CI C+ C CP I C CGLC E+ Sbjct: 177 IKSFTVNEEECIGCEKCVEACPGSMIEYNGEKLGVK----------LPEACPACGLCVES 226 Query: 113 CPVDAIVEGPNFEFATE-TRQELYYDKER 140 CPV+ I + A T + L + +E+ Sbjct: 227 CPVEVISLEVEYASAKPVTDEGLVWSEEK 255 Score = 34.3 bits (77), Expect = 6.2, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 25/78 (32%), Gaps = 17/78 (21%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDG-----------------TRRTVRYDIDMIK 102 + CI C C CP A+ + G +G + R+ Sbjct: 19 FKTCIQCFSCATACPTGALVEKDGKLVFNGSKCDLDGACQKACPVGIKKVDDRFPYSKGH 78 Query: 103 CIYCGLCQEACPVDAIVE 120 C+ C C E CP + I Sbjct: 79 CVLCEKCVEICPAEIISL 96 Score = 34.3 bits (77), Expect = 6.2, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 23/59 (38%), Gaps = 1/59 (1%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C AC LC CP + I++E KC YCG C CP AI Sbjct: 214 PEACPACGLCVESCPVEVISLEVEYASAKPVTDEGLVW-SEEKCAYCGPCAIKCPTGAI 271 >gi|320353022|ref|YP_004194361.1| ferredoxin-dependent glutamate synthase [Desulfobulbus propionicus DSM 2032] gi|320121524|gb|ADW17070.1| ferredoxin-dependent glutamate synthase [Desulfobulbus propionicus DSM 2032] Length = 546 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 32/91 (35%), Gaps = 16/91 (17%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG-----TRRTVRY 96 +S + + + RC C C A CP AI++ + RR Y Sbjct: 11 PSSLSYHDLPWIIEHRED--RCTLCGRCTAACPVGAISLSHFRQRVPKLDVLQKRRGSDY 68 Query: 97 DIDMI---------KCIYCGLCQEACPVDAI 118 +CI CG+C CP +AI Sbjct: 69 RHFTGIRQSTDIAKRCIGCGMCASVCPNEAI 99 Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats. Identities = 10/26 (38%), Positives = 12/26 (46%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGP 122 + +C CG C ACPV AI Sbjct: 24 EHREDRCTLCGRCTAACPVGAISLSH 49 >gi|307297619|ref|ZP_07577425.1| hydrogenase, Fe-only [Thermotogales bacterium mesG1.Ag.4.2] gi|306916879|gb|EFN47261.1| hydrogenase, Fe-only [Thermotogales bacterium mesG1.Ag.4.2] Length = 586 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 24/78 (30%), Gaps = 4/78 (5%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY---DIDMIKCIYCGLCQEACPV 115 +CI C C C + I CI CG C CPV Sbjct: 142 DMNKCIDCGRCVRACDELQGLSILSSVNRGYHVLPLPALGAPIAATDCINCGQCSAVCPV 201 Query: 116 DAIVEGPNF-EFATETRQ 132 AI E F E E R+ Sbjct: 202 GAITERMEFREVVAELRK 219 >gi|291460676|ref|ZP_06600066.1| electron transport complex, RnfABCDGE type, B subunit [Oribacterium sp. oral taxon 078 str. F0262] gi|291416635|gb|EFE90354.1| electron transport complex, RnfABCDGE type, B subunit [Oribacterium sp. oral taxon 078 str. F0262] Length = 296 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 29/89 (32%), Gaps = 12/89 (13%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 K P++K CIAC LCE CP AI + Sbjct: 189 KKLIALVPYKKKRLVACKNLLKGKDVRSACSIGCIACGLCEKNCPFDAIHVTDNLA---- 244 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + KC CG+C + CP AI Sbjct: 245 --------VMNEKCTDCGICAQKCPTGAI 265 Score = 42.4 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 5/70 (7%) Query: 59 GEERCIACKLCEAICPAQ--AITIESGPRCHDGTRRTVRYDIDMIK---CIYCGLCQEAC 113 +E+C AC C CP + A+ R D+ CI CGLC++ C Sbjct: 173 DKEKCTACGACIKACPKKLIALVPYKKKRLVACKNLLKGKDVRSACSIGCIACGLCEKNC 232 Query: 114 PVDAIVEGPN 123 P DAI N Sbjct: 233 PFDAIHVTDN 242 >gi|227827070|ref|YP_002828849.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus islandicus M.14.25] gi|238619235|ref|YP_002914060.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus islandicus M.16.4] gi|227458865|gb|ACP37551.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus islandicus M.14.25] gi|238380304|gb|ACR41392.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus islandicus M.16.4] gi|323474131|gb|ADX84737.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus islandicus REY15A] gi|323476798|gb|ADX82036.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus islandicus HVE10/4] Length = 104 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 2/64 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CIA C CP P ++ ++ CI+C C CPV AI Sbjct: 42 DFDVCIADGSCITACPVNVFRWFDTPGNPVSEKKADPFN--EQACIFCMACVNVCPVAAI 99 Query: 119 VEGP 122 P Sbjct: 100 DVKP 103 >gi|188589554|ref|YP_001922167.1| sulfite reductase, subunit C [Clostridium botulinum E3 str. Alaska E43] gi|188499835|gb|ACD52971.1| sulfite reductase, subunit C [Clostridium botulinum E3 str. Alaska E43] Length = 321 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 24/88 (27%), Gaps = 8/88 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + G + +ERC++C C C + Sbjct: 145 CPNDCIKARMHDFGIIGMTEPQYNKERCVSCGACVRAC--------KKKSVDALKAVNYK 196 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + KCI CG C CP A Sbjct: 197 VVRNEEKCIGCGECVINCPTGAWTRSKE 224 >gi|150020688|ref|YP_001306042.1| thiamine pyrophosphate binding domain-containing protein [Thermosipho melanesiensis BI429] gi|149793209|gb|ABR30657.1| thiamine pyrophosphate enzyme domain protein TPP-binding [Thermosipho melanesiensis BI429] Length = 642 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 26/76 (34%), Gaps = 9/76 (11%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 + + L + E+C CK+C AI +S + ID C CG Sbjct: 574 KKKQKLPTFRVNPEKCTGCKVCITTFGCPAIFWDSE---------NKKAKIDPTMCWGCG 624 Query: 108 LCQEACPVDAIVEGPN 123 C + CP A Sbjct: 625 SCAQICPFGAFELVRE 640 >gi|85703437|ref|ZP_01034541.1| formate dehydrogenase, alpha subunit [Roseovarius sp. 217] gi|85672365|gb|EAQ27222.1| formate dehydrogenase, alpha subunit [Roseovarius sp. 217] Length = 924 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 5/65 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114 + CI+C LC C + + G +D + C+ CG C +ACP Sbjct: 147 NLDACISCGLCVRACR-EVQVNDVIGMAGRGHDAYPVFDLADPMGASTCVACGECVQACP 205 Query: 115 VDAIV 119 A++ Sbjct: 206 TGALM 210 >gi|170717802|ref|YP_001784865.1| electron transporter subunit RnfC [Haemophilus somnus 2336] gi|168825931|gb|ACA31302.1| electron transport complex, RnfABCDGE type, C subunit [Haemophilus somnus 2336] Length = 706 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 33/103 (32%), Gaps = 2/103 (1%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C CP + + + + +CI CGLC CP I Sbjct: 379 QSCIRCSACSDACPVH-LMPQQLYWFARAEDHKKSEEYALKECIECGLCAYVCPSH-IPL 436 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 F E+ ++ R+E+ R + R Sbjct: 437 IQYFRQEKAKIWEIKEKAQKSEEAKIRFEARQARLEKEEQERR 479 >gi|328956229|ref|YP_004373562.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Coriobacterium glomerans PW2] gi|328456553|gb|AEB07747.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Coriobacterium glomerans PW2] Length = 1177 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 17/104 (16%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-----QAITIESGPRCHDGTR- 91 FE G+++ RG + + +CI C C +CP +T E +G R Sbjct: 673 FELGASAYEKRGVAVQVPHWDE-TKCIQCNQCAYVCPHATIRPFVLTDEEVAAAPEGLRT 731 Query: 92 --------RTVRYDI--DMIKCIYCGLCQEACPVDAIVEGPNFE 125 + +++ I + C+ C C + CP DA+ E Sbjct: 732 LDAMGPKAKGMKFTIAVSPLDCMGCTNCAKVCPKDALTMQETSE 775 >gi|328952814|ref|YP_004370148.1| fumarate reductase/succinate dehydrogenase flavoprotein domain protein [Desulfobacca acetoxidans DSM 11109] gi|328453138|gb|AEB08967.1| fumarate reductase/succinate dehydrogenase flavoprotein domain protein [Desulfobacca acetoxidans DSM 11109] Length = 1029 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 24/66 (36%), Gaps = 10/66 (15%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C AICP A+++ R I + C CGLC CP AI Sbjct: 955 PNCRRCLSCLAICPFGAVSLGEKGRP----------TIHVELCRGCGLCAAQCPAQAISM 1004 Query: 121 GPNFEF 126 E Sbjct: 1005 SRLTEP 1010 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 23/92 (25%), Gaps = 12/92 (13%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAIT-------IESGPRCHDGTRRTVRYDI 98 FR R C C C +CP + + I Sbjct: 105 DFRVVIHRRPRYVNISACTGCGECTRVCPVKMPDPYNQGLNQTKAIHLPFPQAVPLAAII 164 Query: 99 DMIKC-----IYCGLCQEACPVDAIVEGPNFE 125 + C CG C + CP AI E Sbjct: 165 NPQVCRFFQGKKCGACIKVCPAGAINLQEQPE 196 >gi|315651463|ref|ZP_07904486.1| pyruvate-ferredoxin oxidoreductase [Eubacterium saburreum DSM 3986] gi|315486283|gb|EFU76642.1| pyruvate-ferredoxin oxidoreductase [Eubacterium saburreum DSM 3986] Length = 1175 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 25/81 (30%), Gaps = 15/81 (18%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQ-----AITIESGPRCHDGT---------RRT 93 RG N E CI C C +CP A+T + +G Sbjct: 681 RGIAVNMPIWN-SENCIQCGFCSYVCPHAVIRTIALTEDEADNAPEGMSVLPMTGMPNYK 739 Query: 94 VRYDIDMIKCIYCGLCQEACP 114 + + C CG C CP Sbjct: 740 FTVAVSALDCTGCGSCANVCP 760 >gi|304410532|ref|ZP_07392150.1| formate dehydrogenase, alpha subunit [Shewanella baltica OS183] gi|307304625|ref|ZP_07584375.1| formate dehydrogenase, alpha subunit [Shewanella baltica BA175] gi|304351016|gb|EFM15416.1| formate dehydrogenase, alpha subunit [Shewanella baltica OS183] gi|306912027|gb|EFN42451.1| formate dehydrogenase, alpha subunit [Shewanella baltica BA175] Length = 1425 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 24/75 (32%), Gaps = 15/75 (20%) Query: 59 GEERCIACKLCEAICPAQAITIE---------------SGPRCHDGTRRTVRYDIDMIKC 103 RCI+C C +C Q+ S R + KC Sbjct: 647 DANRCISCGKCVDVCQLQSGHCAIQFAHDSYQALPQDLSETIERRAPRVGFSASMADSKC 706 Query: 104 IYCGLCQEACPVDAI 118 + CG C + CP A+ Sbjct: 707 VQCGNCVQVCPTGAL 721 Score = 34.3 bits (77), Expect = 5.5, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 4/48 (8%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 +C+ C C +CP A+ R D T I C YCG+ Sbjct: 704 SKCVQCGNCVQVCPTGALVDARDKRQGDETPLKTASTI----CTYCGV 747 >gi|262171465|ref|ZP_06039143.1| iron-sulfur cluster-binding protein [Vibrio mimicus MB-451] gi|261892541|gb|EEY38527.1| iron-sulfur cluster-binding protein [Vibrio mimicus MB-451] Length = 553 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 9/75 (12%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C A+CP +A+ C+ CGLC +ACP + Sbjct: 418 SDCTLCMSCVAVCPTRALHPAGDSPA---------LRFIEQDCVQCGLCVKACPEQVLSA 468 Query: 121 GPNFEFATETRQELY 135 P + RQ + Sbjct: 469 TPQLNWNKAARQGVV 483 Score = 40.9 bits (94), Expect = 0.054, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 14/81 (17%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 C+ C CPA A++ E + R I+ C G C ACP +AI + Sbjct: 186 CERCVDACPAGALSSEGSDQTGH------RIQINPYLCQGVGTCATACPTEAIH----YA 235 Query: 126 FA-TETRQELYYDKERLLNNG 145 Q+ ERLL N Sbjct: 236 LPNPTDTQKFI---ERLLANY 253 Score = 33.9 bits (76), Expect = 7.1, Method: Composition-based stats. Identities = 6/23 (26%), Positives = 8/23 (34%) Query: 97 DIDMIKCIYCGLCQEACPVDAIV 119 + C C C CP A+ Sbjct: 414 ECQTSDCTLCMSCVAVCPTRALH 436 >gi|251778554|ref|ZP_04821474.1| hydrogenase-1 [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082869|gb|EES48759.1| hydrogenase-1 [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 576 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 3/70 (4%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPV 115 +C+ C CEA C + T +G ++ D D C+ CG C ACPV Sbjct: 144 DRSKCVLCGRCEAACSEKTATNSIKIIDDNGDKKVATIDGKCFDDTNCLLCGQCVAACPV 203 Query: 116 DAIVEGPNFE 125 DA+ E + E Sbjct: 204 DALSEKSHTE 213 Score = 35.5 bits (80), Expect = 2.3, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 6/100 (6%) Query: 20 FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI---CPAQ 76 L + K I EK + + R L ++ C + CE + + Sbjct: 59 LALSCETLVQDKMVIRTDSEKVQEAIKLRVAEMLDKHEFKCGPCKRREDCEFLKLVIKTK 118 Query: 77 AITIES---GPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 A + + R+ ID KC+ CG C+ AC Sbjct: 119 ARANKPFIVKDKSEYVDDRSKSIVIDRSKCVLCGRCEAAC 158 >gi|294892640|ref|XP_002774160.1| pyruvate:ferredoxin oxidoreductase/NADPH-cytochrome P450, putative [Perkinsus marinus ATCC 50983] gi|239879377|gb|EER05976.1| pyruvate:ferredoxin oxidoreductase/NADPH-cytochrome P450, putative [Perkinsus marinus ATCC 50983] Length = 1729 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 21/112 (18%) Query: 59 GEERCIACKLCEAICPAQAI-----------------TIESGPRCHDGTRRTVRYDID-- 99 ++C C C AICP I T + P + + I Sbjct: 783 DVDKCTQCNKCSAICPHGVIRPFLASPQELASEKTPLTFVTKPATGGNEASGLAFRIQAS 842 Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNN-GDRWES 150 + C C +C ACP +A+ P + E ++ +D L N GDR+++ Sbjct: 843 PLDCTGCEVCVNACPDNALAMKPLPDAIAEGHKDN-WDFAMTLENRGDRFDA 893 >gi|167750622|ref|ZP_02422749.1| hypothetical protein EUBSIR_01599 [Eubacterium siraeum DSM 15702] gi|167656301|gb|EDS00431.1| hypothetical protein EUBSIR_01599 [Eubacterium siraeum DSM 15702] Length = 432 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 6/60 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + +CI C C C ++G + D + KC+ C LC CPV+ I Sbjct: 369 DKNKCIGCGRCYIAC------YDAGHQALDFDAEARKPVFLGSKCVGCHLCATVCPVNCI 422 >gi|167622043|ref|YP_001672337.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein [Shewanella halifaxensis HAW-EB4] gi|167352065|gb|ABZ74678.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Shewanella halifaxensis HAW-EB4] Length = 559 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 24/74 (32%), Gaps = 9/74 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C C C + CP A+T C+ CGLC+ ACP I Sbjct: 425 NTENCTLCMSCVSTCPTMALTDGGDLPALH---------FVEQDCVQCGLCETACPEKVI 475 Query: 119 VEGPNFEFATETRQ 132 P RQ Sbjct: 476 SLTPQVNLDKAARQ 489 Score = 38.5 bits (88), Expect = 0.29, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 18/53 (33%), Gaps = 11/53 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C CPA AI +ID C G C ACP AI Sbjct: 196 CTRCLNFCPADAIASIEKK-----------IEIDPYLCHGAGSCTNACPTGAI 237 >gi|27262514|gb|AAN87538.1| Pyruvate-flavodoxin oxidoreductase [Heliobacillus mobilis] Length = 1169 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 27/83 (32%), Gaps = 17/83 (20%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITI------ESGPRCHDGTRRTV------- 94 RG A N ++ CI C C +CP AI E Sbjct: 675 RGVAAFVPEWN-KDTCIQCNQCSFVCPHAAIRPFLLNADEQAKAPESFETIKAIGKQLEG 733 Query: 95 ---RYDIDMIKCIYCGLCQEACP 114 R + + C+ CG+C CP Sbjct: 734 LTYRMQVSPLDCMGCGVCAAVCP 756 >gi|15642809|ref|NP_227850.1| iron-sulfur cluster-binding protein [Thermotoga maritima MSB8] gi|170288707|ref|YP_001738945.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Thermotoga sp. RQ2] gi|281412096|ref|YP_003346175.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermotoga naphthophila RKU-10] gi|4980519|gb|AAD35128.1|AE001691_2 iron-sulfur cluster-binding protein [Thermotoga maritima MSB8] gi|170176210|gb|ACB09262.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermotoga sp. RQ2] gi|281373199|gb|ADA66761.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermotoga naphthophila RKU-10] Length = 357 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 14/70 (20%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E+C+AC C CP AIT+ + ID KCI CG C C A Sbjct: 193 EKCVACGTCAKFCPVGAITVTKVAK------------IDYEKCIGCGQCIAMCSYGA--M 238 Query: 121 GPNFEFATET 130 P ++ +T++ Sbjct: 239 SPKWDSSTDS 248 Score = 35.5 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 10/36 (27%), Positives = 14/36 (38%) Query: 87 HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + + KC+ CG C + CPV AI Sbjct: 179 KMEQHSESKPYVVEEKCVACGTCAKFCPVGAITVTK 214 >gi|150017309|ref|YP_001309563.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium beijerinckii NCIMB 8052] gi|149903774|gb|ABR34607.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium beijerinckii NCIMB 8052] Length = 437 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 21/56 (37%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 E CI C C CP I + + + +++ CI CG C CP Sbjct: 359 EESPCIRCGRCVEACPMGLIPSMLSILGERHKFKEAKEEYNLLNCIECGSCVYTCP 414 >gi|315126995|ref|YP_004068998.1| electron transport complex protein RnfB [Pseudoalteromonas sp. SM9913] gi|315015509|gb|ADT68847.1| electron transport complex protein RnfB [Pseudoalteromonas sp. SM9913] Length = 184 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 30/84 (35%), Gaps = 10/84 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E + + + E+ CI C C CP AI + + + Sbjct: 90 EAKPLAGGEQADPVKTVAYIREDECIGCTKCIQACPVDAIVGATRQ----------MHTV 139 Query: 99 DMIKCIYCGLCQEACPVDAIVEGP 122 + +C C LC E CPVD I P Sbjct: 140 LIDECTGCDLCVEPCPVDCIDMLP 163 >gi|299143637|ref|ZP_07036717.1| putative 4Fe-4S ferredoxin, iron-sulfur binding protein [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298518122|gb|EFI41861.1| putative 4Fe-4S ferredoxin, iron-sulfur binding protein [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 271 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 33/114 (28%), Gaps = 17/114 (14%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGE---HALRRYPNGEERCIACKLCEAICPAQAITIES 82 K P+ T G + CI CK+C CP +I ++ Sbjct: 161 NLSKPNIIGEVPYRPYYTPRDRHGNGINFVKIKPKTDMSLCIDCKICARECPLGSINFDN 220 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN-FEFATETRQELY 135 KC+ C C + CP A + F +++Y Sbjct: 221 VEEI-------------PGKCMKCCACIKKCPTGAKYFDDEGYLFHARELEDMY 261 >gi|288942376|ref|YP_003444616.1| RnfABCDGE type electron transport complex subunit C [Allochromatium vinosum DSM 180] gi|288897748|gb|ADC63584.1| electron transport complex, RnfABCDGE type, C subunit [Allochromatium vinosum DSM 180] Length = 504 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 23/81 (28%), Gaps = 4/81 (4%) Query: 37 PFEKGSTSPRFRGEHALRRYPNG---EERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93 P + G AL CI C C CP + +E G Sbjct: 340 PSTRVPMVKGSNGVLALTAAEINGGTPRPCIRCAGCVQACPCGLVPLEMVAHIRAGDLEG 399 Query: 94 VRYDIDMIKCIYCGLCQEACP 114 M CI CG C CP Sbjct: 400 AVKRGLMD-CIGCGSCAYVCP 419 >gi|300779506|ref|ZP_07089364.1| ferredoxin [Chryseobacterium gleum ATCC 35910] gi|300505016|gb|EFK36156.1| ferredoxin [Chryseobacterium gleum ATCC 35910] Length = 299 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 + +ERC C ICP +A+T+ G R + + CI CG+C+ CP Sbjct: 18 FQISQERCEGFSHCVNICPVEALTLVEGYVNEILNIRALYVQ--LDTCIMCGVCEPECPT 75 Query: 116 DAIVE 120 +AI+ Sbjct: 76 EAIML 80 >gi|218782183|ref|YP_002433501.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfatibacillum alkenivorans AK-01] gi|218763567|gb|ACL06033.1| Electron transport complex protein, RnfC [Desulfatibacillum alkenivorans AK-01] Length = 422 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 14/56 (25%), Positives = 21/56 (37%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + CI C C +CPA+ + D++ C+ CG C CP Sbjct: 343 EDASCINCGECIKVCPAKVPVNMMVRFLENQLYVDAAEKYDLLSCVDCGFCSFVCP 398 Score = 35.1 bits (79), Expect = 3.6, Method: Composition-based stats. Identities = 8/18 (44%), Positives = 11/18 (61%) Query: 97 DIDMIKCIYCGLCQEACP 114 +I+ CI CG C + CP Sbjct: 341 EIEDASCINCGECIKVCP 358 >gi|153003117|ref|YP_001377442.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Anaeromyxobacter sp. Fw109-5] gi|152026690|gb|ABS24458.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Anaeromyxobacter sp. Fw109-5] Length = 652 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 31/98 (31%), Gaps = 14/98 (14%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR--- 95 E+ + + R + E+C+ C C +CP +++ Sbjct: 534 EEEAIAQGARCLVCHVQTIYDPEKCVLCGRCVDVCPEYCLSLVPIEELELPEEERRALVA 593 Query: 96 -----------YDIDMIKCIYCGLCQEACPVDAIVEGP 122 D KCI CGLC CP DA+ Sbjct: 594 LARADGLPLSAMLKDEEKCIRCGLCAIRCPTDAMTMEH 631 Score = 41.6 bits (96), Expect = 0.035, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 15/48 (31%), Gaps = 1/48 (2%) Query: 77 AITIESGPRCHDGTRRTVRYDID-MIKCIYCGLCQEACPVDAIVEGPN 123 A + E I KC+ CG C + CP + P Sbjct: 531 AFSEEEAIAQGARCLVCHVQTIYDPEKCVLCGRCVDVCPEYCLSLVPI 578 >gi|15899306|ref|NP_343911.1| ferredoxin (zfx-1) [Sulfolobus solfataricus P2] gi|284175250|ref|ZP_06389219.1| ferredoxin (zfx-1) [Sulfolobus solfataricus 98/2] gi|13815878|gb|AAK42701.1| Ferredoxin (zfx-1) [Sulfolobus solfataricus P2] gi|261601066|gb|ACX90669.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus solfataricus 98/2] Length = 104 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 2/64 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CIA C CP P ++ ++ CI+C C CPV AI Sbjct: 42 DFDLCIADGSCINACPVNVFQWYDTPGHPASEKKADP--VNEQACIFCMACVNVCPVAAI 99 Query: 119 VEGP 122 P Sbjct: 100 DVKP 103 >gi|296184817|ref|ZP_06853228.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7] gi|296050599|gb|EFG90022.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7] Length = 495 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 32/106 (30%), Gaps = 22/106 (20%) Query: 35 NYPFEKGSTSPRFRGEHALRRY---------------PNGEERCIACKLCEAICPAQAIT 79 P +K + + RG + +E C C +C CP AI Sbjct: 98 KCPIDKYTVTDACRGCIQHKCMEVCPANAITRVAGSAYINQELCKECGMCRKSCPYGAIA 157 Query: 80 IESGPRCHDGTR-------RTVRYDIDMIKCIYCGLCQEACPVDAI 118 P I+ +CI CG C ACP AI Sbjct: 158 EVMRPCKRVCPTGALEINSDNKMAMIEKEECINCGACMAACPFGAI 203 >gi|241765323|ref|ZP_04763300.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidovorax delafieldii 2AN] gi|241364961|gb|EER59886.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidovorax delafieldii 2AN] Length = 584 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 10/76 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++RC C C + CPA A+ + + C+ CGLC CP +AI Sbjct: 451 DKDRCTLCLSCVSACPASALQDNP---------QLPQLRFIEQNCVQCGLCVTTCPENAI 501 Query: 119 VEGPNFEFATETRQEL 134 P A E R +L Sbjct: 502 ALQPRLLLAPE-RAQL 516 Score = 42.0 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 32/100 (32%), Gaps = 21/100 (21%) Query: 19 AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78 L LR FEK + A R + C C IC A+AI Sbjct: 168 GMLLRLRELVGE-------FEKPKFFAYKQKLCAHSRNET-----VGCNACVDICSAEAI 215 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + R + ++ C+ CG C CP A+ Sbjct: 216 ASD---------RSRQQIKVNPNLCVGCGACTTVCPTGAL 246 Score = 38.2 bits (87), Expect = 0.41, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 14/30 (46%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 ID+ C C C ACP +AI + A Sbjct: 75 IDLDLCTRCNACVAACPENAIGLDYQIDLA 104 Score = 33.5 bits (75), Expect = 9.5, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 33/95 (34%), Gaps = 19/95 (20%) Query: 47 FRGEHALRRYPN---GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103 + G L+ + + C C C A CP AI ++ Y ID+ C Sbjct: 61 WLGAFELQWSADNPIDLDLCTRCNACVAACPENAIGLD--------------YQIDLAAC 106 Query: 104 IYCGLCQEACPVD-AIVEGPNFEFATETRQELYYD 137 C +AC V AI + R +L D Sbjct: 107 QSHRACVKACQVAGAIDFNREAAQH-QDRFDLVLD 140 >gi|229580474|ref|YP_002838874.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Sulfolobus islandicus Y.G.57.14] gi|228011190|gb|ACP46952.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Sulfolobus islandicus Y.G.57.14] Length = 94 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 27/75 (36%), Gaps = 11/75 (14%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G + + +CI CK+C CP I +G +D C CG+ Sbjct: 30 GAWRIVKPVVDYNKCIGCKVCFMFCPESTIVPSNGKV-----------RVDYEYCKGCGV 78 Query: 109 CQEACPVDAIVEGPN 123 C CPV AI Sbjct: 79 CANVCPVKAISMVNE 93 >gi|261339954|ref|ZP_05967812.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterobacter cancerogenus ATCC 35316] gi|288317867|gb|EFC56805.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Enterobacter cancerogenus ATCC 35316] Length = 1174 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 34/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPLGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQA--------ITIESGPRCHD--------GTRRTVRYDIDMIKCIYCGLCQEACPV-- 115 P A +E+ P + + C C LC E CP Sbjct: 700 PHSAIRAKVVSPQDMEAAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|159110100|ref|XP_001705312.1| Nitroreductase family protein fused to ferredoxin domain Fd-NR1 [Giardia lamblia ATCC 50803] gi|157433394|gb|EDO77638.1| Nitroreductase family protein fused to ferredoxin domain Fd-NR1 [Giardia lamblia ATCC 50803] Length = 278 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 24/67 (35%), Gaps = 8/67 (11%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 R E+ CI C +C CP Q I + + R + CI CG C C Sbjct: 3 RFPEVDEDLCIGCNVCVQGCPTQCIEVNAETRKLVFRAKET--------CISCGHCASVC 54 Query: 114 PVDAIVE 120 AI Sbjct: 55 RTAAISM 61 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 6/36 (16%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 ++D CI C +C + CP I E ETR+ Sbjct: 6 EVDEDLCIGCNVCVQGCPTQCI------EVNAETRK 35 >gi|326561676|gb|EGE12013.1| RnfABCDGE type electron transport complex subunit B [Moraxella catarrhalis 103P14B1] Length = 275 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 28/100 (28%), Gaps = 12/100 (12%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 + T P + R + R E CI C C CP AI + Sbjct: 80 TIANILNKPTKPATPSQWQIDPLTNRPKEV--RAIIQEADCIGCTKCIPACPVDAIVGTA 137 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 I C C LC CPVD I P Sbjct: 138 KHMHS----------IITDLCTGCELCLAPCPVDCIDVIP 167 >gi|332652330|ref|ZP_08418075.1| putative [Fe] hydrogenase, large subunit HymC [Ruminococcaceae bacterium D16] gi|332517476|gb|EGJ47079.1| putative [Fe] hydrogenase, large subunit HymC [Ruminococcaceae bacterium D16] Length = 564 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 3/68 (4%) Query: 59 GEERCIACKLCEAICPAQAITIESG-PRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPV 115 +CI C C +C R R + + ++ CI CG C CP Sbjct: 143 DPSKCILCGDCVRMCEETIGMGIIDFARRGYNMRVSPAFGRNLSETHCISCGQCAAVCPT 202 Query: 116 DAIVEGPN 123 AI Sbjct: 203 GAITIYNQ 210 >gi|304314315|ref|YP_003849462.1| glutamate synthase, large subunit [Methanothermobacter marburgensis str. Marburg] gi|302587774|gb|ADL58149.1| predicted glutamate synthase, large subunit [Methanothermobacter marburgensis str. Marburg] Length = 619 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/53 (39%), Positives = 24/53 (45%), Gaps = 11/53 (20%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 C+ C CE +CP AI I +ID KCI CG C ACPV Sbjct: 167 CVFCGTCEIVCPTDAIEIVED-----------HAEIDKTKCIMCGSCLAACPV 208 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 9/22 (40%), Positives = 13/22 (59%) Query: 103 CIYCGLCQEACPVDAIVEGPNF 124 C++CG C+ CP DAI + Sbjct: 167 CVFCGTCEIVCPTDAIEIVEDH 188 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 7/76 (9%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R L + G I C+ C A+ ++ R + + ID C+ C Sbjct: 28 RSAIFLNKMDTGYHA-IVCQQCVDPSCARGCFRDAIQRENGAVK------IDQESCVGCK 80 Query: 108 LCQEACPVDAIVEGPN 123 LC CP+ AI + Sbjct: 81 LCMLMCPIGAITYTDD 96 >gi|260892969|ref|YP_003239066.1| Cobyrinic acid ac-diamide synthase [Ammonifex degensii KC4] gi|260865110|gb|ACX52216.1| Cobyrinic acid ac-diamide synthase [Ammonifex degensii KC4] Length = 280 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 15/81 (18%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 + ++ + +C C +C +C AI +D + Sbjct: 47 PVKEYEEPFYGSQQPVVDQNKCTRCGVCTQLCRFDAIDHGE---------------VDEL 91 Query: 102 KCIYCGLCQEACPVDAIVEGP 122 C CG+C CP AI P Sbjct: 92 NCEGCGVCFHGCPEKAITMEP 112 Score = 34.3 bits (77), Expect = 6.0, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 19/46 (41%) Query: 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 + + + +D KC CG+C + C DAI G E E Sbjct: 49 KEYEEPFYGSQQPVVDQNKCTRCGVCTQLCRFDAIDHGEVDELNCE 94 >gi|213417927|ref|ZP_03351018.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 194 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 25/78 (32%), Gaps = 12/78 (15%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C C C CP I + I +C CG C CP A+ Sbjct: 129 PQECRMCGACWRSCPENVIQFDDD-----------TLTIAAARCTGCGGCAAVCPHQALR 177 Query: 120 EGPNFEFATETRQELYYD 137 + E A+ TR + Sbjct: 178 LRFDVEPAS-TRHSAVHT 194 >gi|220928592|ref|YP_002505501.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Clostridium cellulolyticum H10] gi|219998920|gb|ACL75521.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Clostridium cellulolyticum H10] Length = 1176 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 32/111 (28%), Gaps = 29/111 (26%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDG--TR 91 RG E CI C +C +CP A + Sbjct: 675 RGIAVNVPEWI-PETCIQCNICSLVCPHAVIRPTLATEEELKDAPESFVTKKAVGKGLEE 733 Query: 92 RTVRYDIDMIKCIYCGLCQEACPV--DAIVEG----------PNFEFATET 130 R I + C CG C + CP A+V PNF+F T Sbjct: 734 YQFRIQISPMDCTGCGNCADVCPAKPKALVMKKLSTQTEREIPNFDFVTRN 784 >gi|78223287|ref|YP_385034.1| respiratory-chain NADH dehydrogenase domain-containing protein [Geobacter metallireducens GS-15] gi|78194542|gb|ABB32309.1| tungsten-dependent benzoyl-CoA reductase-related protein bamH [Geobacter metallireducens GS-15] Length = 635 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 36/92 (39%), Gaps = 15/92 (16%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 +RY F+ + + +K + + E+C AC C CPA+AI Sbjct: 533 TIRY-FRDEYEAHIREKKCPALSC----KEMIAFHIDPEKCKACGSCFRQCPAEAIQG-- 585 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + + + ID KC CG C + CP Sbjct: 586 --------GKKLIHIIDQEKCTKCGTCLDVCP 609 Score = 37.8 bits (86), Expect = 0.49, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 17/44 (38%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 I + + + ID KC CG C CP +AI G Sbjct: 544 HIREKKCPALSCKEMIAFHIDPEKCKACGSCFRQCPAEAIQGGK 587 >gi|56962674|ref|YP_174400.1| formate dehydrogenase alpha subunit [Bacillus clausii KSM-K16] gi|56908912|dbj|BAD63439.1| formate dehydrogenase alpha subunit [Bacillus clausii KSM-K16] Length = 985 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQE 111 Y ++CI C C C +T R + ID C+ CG C Sbjct: 139 FYRYDPDQCILCGRCVEACQDVQVTETLSIDWSLERPRVIWDKHSPIDESSCVNCGHCST 198 Query: 112 ACPVDAIVE 120 CP +A++E Sbjct: 199 VCPCNAMME 207 Score = 42.4 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 24/68 (35%), Gaps = 8/68 (11%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTR----RTVRYDIDMIKCIY 105 R N E C C CE + + + H + R Y D +CI Sbjct: 90 RILGNHELYCTVCDYNNGNCEIHNAVKEMKMTHQETEHSSKKAEVQRNAFYRYDPDQCIL 149 Query: 106 CGLCQEAC 113 CG C EAC Sbjct: 150 CGRCVEAC 157 >gi|260220426|emb|CBA27952.1| Formate dehydrogenase subunit alpha [Curvibacter putative symbiont of Hydra magnipapillata] Length = 992 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 33/87 (37%), Gaps = 5/87 (5%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P K + + + + + CI C C C ++ + + G + + Sbjct: 172 PELKALRREQPKADVSHPAMAVNLDACIQCNRCVRACR-ESQVNDVIGYANRGAHAEIVF 230 Query: 97 D----IDMIKCIYCGLCQEACPVDAIV 119 D + C+ CG C +ACP A++ Sbjct: 231 DLNDPMADSTCVACGECVQACPTGALM 257 >gi|294887311|ref|XP_002772046.1| pyruvate dehydrogenase, putative [Perkinsus marinus ATCC 50983] gi|239875984|gb|EER03862.1| pyruvate dehydrogenase, putative [Perkinsus marinus ATCC 50983] Length = 1871 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 21/112 (18%) Query: 59 GEERCIACKLCEAICPAQAI-----------------TIESGPRCHDGTRRTVRYDID-- 99 ++C C C AICP I T + P + + I Sbjct: 783 DVDKCTQCNKCSAICPHGVIRPFLASPQELASEKTPLTFVTKPATGGNEASGLAFRIQAS 842 Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNN-GDRWES 150 + C C +C ACP +A+ P + E ++ +D L N GDR+++ Sbjct: 843 PLDCTGCEVCVNACPDNALTMKPLPDAIAEGHKDN-WDFAMTLENRGDRFDA 893 >gi|257065153|ref|YP_003144825.1| NADH:ubiquinone oxidoreductase chain G-like protein [Slackia heliotrinireducens DSM 20476] gi|256792806|gb|ACV23476.1| NADH:ubiquinone oxidoreductase chain G-like protein [Slackia heliotrinireducens DSM 20476] Length = 251 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 29/88 (32%), Gaps = 2/88 (2%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 R E+CI C LC C + S + YD C+ C C C Sbjct: 120 RFVTIDNEKCILCGLCVQACNSLGTGAISTVNRGVDKKVDTPYDKPSEFCVGCLSCANVC 179 Query: 114 PVDAIVEGP-NFEFATETRQ-ELYYDKE 139 P AI + R+ +L KE Sbjct: 180 PTGAIGYTETDTTRTIWNREFDLVLCKE 207 >gi|254517630|ref|ZP_05129686.1| ferredoxin hydrogenase [Clostridium sp. 7_2_43FAA] gi|226911379|gb|EEH96580.1| ferredoxin hydrogenase [Clostridium sp. 7_2_43FAA] Length = 496 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 7/69 (10%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIKCIYCGLC 109 +E C C +C+ CP AI P + R I C+ CG C Sbjct: 136 YINQELCKECGMCKKACPYDAIAEVMRPCKRVCPTGALDINQDDRRAMIKEETCVNCGSC 195 Query: 110 QEACPVDAI 118 ACP AI Sbjct: 196 MSACPFGAI 204 Score = 37.4 bits (85), Expect = 0.72, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 13/69 (18%) Query: 54 RRYPNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + + C C C C AIT +G R I+ C CG+C++ Sbjct: 102 INKYSVTDSCRNCLAHKCHEACNFGAITYVAG-----------RAYINQELCKECGMCKK 150 Query: 112 ACPVDAIVE 120 ACP DAI E Sbjct: 151 ACPYDAIAE 159 >gi|224369237|ref|YP_002603401.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Desulfobacterium autotrophicum HRM2] gi|223691954|gb|ACN15237.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Desulfobacterium autotrophicum HRM2] Length = 355 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 10/62 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C+ C C AI ++ ++ +CI CGLC CP AI Sbjct: 275 DSDLCTGCETCLERCQMDAILLDQDMHAL----------VNRDRCIGCGLCVTTCPTAAI 324 Query: 119 VE 120 Sbjct: 325 TL 326 >gi|206889382|ref|YP_002249517.1| hydrogenase [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741320|gb|ACI20377.1| hydrogenase [Thermodesulfovibrio yellowstonii DSM 11347] Length = 465 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 33/92 (35%), Gaps = 10/92 (10%) Query: 27 FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC 86 + T S + +R E C+ C C ++CPA A+ G + Sbjct: 1 MVRKVNTFKGNGAVKSQTGTYRAGELRGIIKINEGNCVGCHTCSSVCPAGAVKGSFGDKH 60 Query: 87 HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ID+ KCI CG C CP A+ Sbjct: 61 S----------IDLDKCINCGQCLLNCPFGAV 82 >gi|253701454|ref|YP_003022643.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp. M21] gi|251776304|gb|ACT18885.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp. M21] Length = 614 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 34/108 (31%), Gaps = 17/108 (15%) Query: 29 KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ------------ 76 + + T+ + EK + R + RC+ C C C Sbjct: 498 REEITLGF-EEKEAREQAARCRQCSIQTVFDRSRCLLCGTCVDTCVHGTLKLVRLEDVEG 556 Query: 77 ----AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 A + + GTR D +C+ CG+C CP AI Sbjct: 557 DERFAQLTAALKKGAPGTRARTAIIKDETRCVSCGMCARRCPGGAITM 604 >gi|153005613|ref|YP_001379938.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152029186|gb|ABS26954.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Anaeromyxobacter sp. Fw109-5] Length = 426 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C C+ C +CP +A++ S R R D +C+ CG+C AC AI Sbjct: 289 EESACNGCEKCVRVCPVEAMSAVSANDPRHPKRTVARLD--EDRCLGCGVCVRACAPRAI 346 Query: 119 VEGP 122 P Sbjct: 347 ALRP 350 >gi|301061171|ref|ZP_07201960.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] gi|300444713|gb|EFK08689.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] Length = 433 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 7/67 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-------IDMIKCIYCGLCQE 111 E +CI C+ CE CP E G + +D+ C CG C + Sbjct: 106 DEIKCIGCRQCEYNCPVYVPDEEQGGFAARKAIYIPFSNAIPQVALMDVENCTLCGKCAK 165 Query: 112 ACPVDAI 118 CP A+ Sbjct: 166 VCPTQAV 172 >gi|288935781|ref|YP_003439840.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Klebsiella variicola At-22] gi|288890490|gb|ADC58808.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Klebsiella variicola At-22] Length = 1175 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 31/142 (21%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A E C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEALCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + + + C C LC E CP Sbjct: 700 PHSAIRAKVVAPEEMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|262042923|ref|ZP_06016068.1| pyruvate-ferredoxin oxidoreductase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039763|gb|EEW40889.1| pyruvate-ferredoxin oxidoreductase [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 1175 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 31/142 (21%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A E C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEALCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + + + C C LC E CP Sbjct: 700 PHSAIRAKVVAPEEMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|238894465|ref|YP_002919199.1| putative oxidoreductase Fe-S subunit [Klebsiella pneumoniae NTUH-K2044] gi|238546781|dbj|BAH63132.1| putative oxidoreductase Fe-S subunit [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] Length = 1175 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 31/142 (21%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A E C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEALCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + + + C C LC E CP Sbjct: 700 PHSAIRAKVVAPEEMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|229514922|ref|ZP_04404382.1| iron-sulfur cluster-binding protein [Vibrio cholerae TMA 21] gi|229347627|gb|EEO12586.1| iron-sulfur cluster-binding protein [Vibrio cholerae TMA 21] Length = 553 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 9/75 (12%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C A+CP +A+ C+ CGLC +ACP + Sbjct: 418 SDCTLCMSCVAVCPTRALHPAGDSPA---------LRFIEQDCVQCGLCVKACPEQVLSA 468 Query: 121 GPNFEFATETRQELY 135 P + RQ + Sbjct: 469 TPQLNWNKAARQGVV 483 Score = 42.4 bits (98), Expect = 0.023, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 12/80 (15%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 C+ C CPA A++ E + R I+ C G C ACP +AI Sbjct: 186 CERCVDACPAGALSSEGSEQTGH------RIQINPYLCQGVGTCATACPTEAIH------ 233 Query: 126 FATETRQELYYDKERLLNNG 145 +A + ERLL N Sbjct: 234 YALPNPADTQKFIERLLANY 253 Score = 33.9 bits (76), Expect = 7.4, Method: Composition-based stats. Identities = 6/23 (26%), Positives = 8/23 (34%) Query: 97 DIDMIKCIYCGLCQEACPVDAIV 119 + C C C CP A+ Sbjct: 414 ECQASDCTLCMSCVAVCPTRALH 436 >gi|206575856|ref|YP_002238852.1| putative pyruvate:ferredoxin (flavodoxin) oxidoreductase [Klebsiella pneumoniae 342] gi|206564914|gb|ACI06690.1| putative pyruvate:ferredoxin (flavodoxin) oxidoreductase [Klebsiella pneumoniae 342] Length = 1175 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 31/142 (21%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A E C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEALCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + + + C C LC E CP Sbjct: 700 PHSAIRAKVVAPEEMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|167768923|ref|ZP_02440976.1| hypothetical protein ANACOL_00240 [Anaerotruncus colihominis DSM 17241] gi|167668563|gb|EDS12693.1| hypothetical protein ANACOL_00240 [Anaerotruncus colihominis DSM 17241] Length = 501 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 21/64 (32%), Gaps = 9/64 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C+LCE C A R R D KC+ C C CP A+ Sbjct: 15 DDAACTRCRLCERECANGAHGFND---------RQKRMTADNAKCVNCQRCVAICPTHAL 65 Query: 119 VEGP 122 Sbjct: 66 RIVK 69 >gi|163751795|ref|ZP_02159012.1| electron transport complex protein RnfC [Shewanella benthica KT99] gi|161328359|gb|EDP99519.1| electron transport complex protein RnfC [Shewanella benthica KT99] Length = 620 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 32/106 (30%), Gaps = 9/106 (8%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C+ C C +CP Q + + ++ CI CG C CP I Sbjct: 383 PCVRCGECAHVCPVQ-LLPQQLFWHAQAQEYDKATKFNLADCIECGCCTYVCP-SEIPLV 440 Query: 122 PNFEFAT-------ETRQELYYDKERLLNNGDRWESEIVRNIVTDS 160 + A E +++ K+R R E E Sbjct: 441 EYYRIAKSAIKAEAEEKKQAELAKQRFDLRTQRLEDEKRAREEKQK 486 >gi|152969999|ref|YP_001335108.1| putative oxidoreductase, Fe-S subunit [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|150954848|gb|ABR76878.1| putative oxidoreductase, Fe-S subunit [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] Length = 1175 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 31/142 (21%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A E C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEALCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + + + C C LC E CP Sbjct: 700 PHSAIRAKVVAPEEMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|134290941|ref|YP_001114710.1| dihydropyrimidine dehydrogenase [Burkholderia vietnamiensis G4] gi|134134130|gb|ABO58455.1| dihydrouracil dehydrogenase (NAD+) / dihydropyrimidine dehydrogenase (NADP+) / dihydroorotate oxidase B, catalytic subunit [Burkholderia vietnamiensis G4] Length = 435 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 6/63 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117 ++RCI C LC C + ++ DG R +++ +C+ C LC CPV Sbjct: 341 DQDRCIQCGLCHIACED--TSHQAITATKDGVR---HFEVVDAQCVGCNLCMHVCPVEQC 395 Query: 118 IVE 120 I Sbjct: 396 ITM 398 >gi|300813869|ref|ZP_07094174.1| 4Fe-4S binding domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300512056|gb|EFK39251.1| 4Fe-4S binding domain protein [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 310 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 26/125 (20%), Positives = 39/125 (31%), Gaps = 24/125 (19%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTS----PRFRGEHALRRYPNG 59 R + LF + L F + PF K + + + Sbjct: 186 IRAALGKLFTWKLFVLLTFTLSSIF-----VYRPFCKFICPLGAFYGLFNKLSFLQMKVN 240 Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 ++CI CK C C + D + +CI CG+C CPV+AI Sbjct: 241 FDKCIGCKKCYKACKMDVDVCK---------------DPNHNECIRCGVCINVCPVEAIE 285 Query: 120 EGPNF 124 F Sbjct: 286 FRYGF 290 >gi|283853098|ref|ZP_06370353.1| NADH dehydrogenase (quinone) [Desulfovibrio sp. FW1012B] gi|283571496|gb|EFC19501.1| NADH dehydrogenase (quinone) [Desulfovibrio sp. FW1012B] Length = 491 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 18/51 (35%) Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 A ++ + Y ID KC C LC + CPV+ I Sbjct: 412 FGHEYAAHVQDKKCPAHVCTAMLTYTIDPAKCTGCTLCTKVCPVECISGTK 462 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 10/67 (14%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 A+ Y +C C LC +CP + I+ + ID KCI CG C + Sbjct: 432 AMLTYTIDPAKCTGCTLCTKVCPVECISGTKKQP----------HTIDATKCIKCGACYD 481 Query: 112 ACPVDAI 118 C D+I Sbjct: 482 KCKFDSI 488 >gi|262190854|ref|ZP_06049074.1| iron-sulfur cluster-binding protein [Vibrio cholerae CT 5369-93] gi|262033273|gb|EEY51791.1| iron-sulfur cluster-binding protein [Vibrio cholerae CT 5369-93] Length = 553 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 9/75 (12%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C A+CP +A+ C+ CGLC +ACP + Sbjct: 418 SDCTLCMSCVAVCPTRALHPAGDSPA---------LRFIEQDCVQCGLCVKACPEQVLSA 468 Query: 121 GPNFEFATETRQELY 135 P + RQ + Sbjct: 469 TPQLNWNKAARQGVV 483 Score = 40.9 bits (94), Expect = 0.058, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 14/81 (17%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 C+ C CPA A++ E + R I+ C G C ACP +AI + Sbjct: 186 CERCVDACPAGALSSEGSDQTGH------RIQINPYLCQGVGTCATACPTEAIH----YA 235 Query: 126 FA-TETRQELYYDKERLLNNG 145 Q+ ERLL N Sbjct: 236 LPNPTDTQKFI---ERLLANY 253 Score = 33.9 bits (76), Expect = 7.4, Method: Composition-based stats. Identities = 6/23 (26%), Positives = 8/23 (34%) Query: 97 DIDMIKCIYCGLCQEACPVDAIV 119 + C C C CP A+ Sbjct: 414 ECQASDCTLCMSCVAVCPTRALH 436 >gi|227498880|ref|ZP_03929020.1| ferredoxin [Acidaminococcus sp. D21] gi|226904332|gb|EEH90250.1| ferredoxin [Acidaminococcus sp. D21] Length = 301 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 29/63 (46%), Gaps = 7/63 (11%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 + CI+C LC CP QAIT+E G ID KC+ CGLC + CP Sbjct: 210 MTDCGVSCISCGLCAKNCPKQAITMEDGVNGSIPV-------IDYDKCVGCGLCVQKCPR 262 Query: 116 DAI 118 + Sbjct: 263 KCL 265 Score = 40.5 bits (93), Expect = 0.071, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 5/69 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQEAC 113 ++C+ C C + CP I + ++ + + CI CGLC + C Sbjct: 168 DYDKCVGCGACASTCPQFLIEMMKASNKVLVQCNNREKGKAAMTDCGVSCISCGLCAKNC 227 Query: 114 PVDAIVEGP 122 P AI Sbjct: 228 PKQAITMED 236 Score = 40.5 bits (93), Expect = 0.081, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 17/60 (28%), Gaps = 10/60 (16%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C C C A+ + D KC+ CG C CP I Sbjct: 142 CFGCGACVDACSFGALAMGENGLP----------QFDYDKCVGCGACASTCPQFLIEMMK 191 >gi|237653891|ref|YP_002890205.1| electron transport complex protein RnfB [Thauera sp. MZ1T] gi|237625138|gb|ACR01828.1| electron transport complex, RnfABCDGE type, B subunit [Thauera sp. MZ1T] Length = 183 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 29/93 (31%), Gaps = 10/93 (10%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E S E E+ CI C LC CP AI + + + Sbjct: 89 EFKPLSEEHGVEKPKSVAVIDEQVCIGCTLCIQACPVDAIVGAAKQ----------MHTV 138 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 C C LC CPVD I P E + Sbjct: 139 VEPLCTGCELCVAPCPVDCIAMVPLAETVHTWK 171 >gi|217966538|ref|YP_002352044.1| protein of unknown function DUF362 [Dictyoglomus turgidum DSM 6724] gi|217335637|gb|ACK41430.1| protein of unknown function DUF362 [Dictyoglomus turgidum DSM 6724] Length = 378 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 12/75 (16%) Query: 47 FRGEHALRRYP-NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 F +R+YP +E+CI C++CE CP +AIT + ID KCI Sbjct: 304 FLYNKFIRQYPVIEDEKCIKCRICENSCPNKAITYDPNKMI-----------IDYKKCIS 352 Query: 106 CGLCQEACPVDAIVE 120 C C E CP AI Sbjct: 353 CFCCHELCPQKAIRL 367 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 12/34 (35%), Positives = 17/34 (50%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 I+ KCI C +C+ +CP AI PN + Sbjct: 316 IEDEKCIKCRICENSCPNKAITYDPNKMIIDYKK 349 >gi|168205052|ref|ZP_02631057.1| [Fe] hydrogenase [Clostridium perfringens E str. JGS1987] gi|170663376|gb|EDT16059.1| [Fe] hydrogenase [Clostridium perfringens E str. JGS1987] Length = 696 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 35/88 (39%), Gaps = 13/88 (14%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 EE+CI C C+ IC ++ D+ CI CG C CP Sbjct: 21 CRDEEKCIKCGSCKNICTD---------YIGVNGHYSLEKTNDIAVCINCGQCANVCPTS 71 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNN 144 +I E ++ + Q+ DK++++ Sbjct: 72 SITEVFDY----KKVQDSISDKDKIVIV 95 >gi|21886612|dbj|BAC05499.1| BssD [Thauera sp. DNT-1] Length = 383 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 6/74 (8%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 K + + Y +RC++C C A+CP A + GPR + +D Sbjct: 83 KCPWCHNPETQKVTKEYYYNRDRCVSCGRCAAVCPTGASQLVDGPRGTQTLK------LD 136 Query: 100 MIKCIYCGLCQEAC 113 KC C C C Sbjct: 137 RDKCTNCMRCVAVC 150 Score = 38.5 bits (88), Expect = 0.31, Method: Composition-based stats. Identities = 9/47 (19%), Positives = 14/47 (29%) Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + + T Y + +C+ CG C CP A Sbjct: 79 GCPLKCPWCHNPETQKVTKEYYYNRDRCVSCGRCAAVCPTGASQLVD 125 >gi|59711541|ref|YP_204317.1| electron transport complex protein RnfB [Vibrio fischeri ES114] gi|197334877|ref|YP_002155697.1| electron transport complex protein RnfB [Vibrio fischeri MJ11] gi|75507049|sp|Q5E6B7|RNFB_VIBF1 RecName: Full=Electron transport complex protein rnfB gi|226735435|sp|B5FCN4|RNFB_VIBFM RecName: Full=Electron transport complex protein rnfB gi|59479642|gb|AAW85429.1| predicted iron-sulfur protein (Rnf/Rsx reducing system) [Vibrio fischeri ES114] gi|197316367|gb|ACH65814.1| electron transport complex protein RnfB [Vibrio fischeri MJ11] Length = 194 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 27/81 (33%), Gaps = 10/81 (12%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 +S + + E+ CI C C CP AI + + + Sbjct: 93 PSSAHDEEKSIKKVAFIHEDMCIGCTKCIQACPVDAIVGGTK----------ALHTVIES 142 Query: 102 KCIYCGLCQEACPVDAIVEGP 122 +C C LC CP D I P Sbjct: 143 ECTGCDLCVAPCPTDCIEMIP 163 >gi|78189907|ref|YP_380245.1| putative glutamate synthase (NADPH) small subunit [Chlorobium chlorochromatii CaD3] gi|78172106|gb|ABB29202.1| iron-sulfur cluster-binding protein, GltD family [Chlorobium chlorochromatii CaD3] Length = 579 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 6/59 (10%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C CK C + CP +AI+ G YD KC+ C LC CP I G Sbjct: 522 CFDCKQCVSFCPQEAISRFRD--NPVGEVVYTNYD----KCVGCHLCSLVCPSGYIQMG 574 >gi|22125976|ref|NP_669399.1| electron transport complex protein RnfB [Yersinia pestis KIM 10] gi|45441843|ref|NP_993382.1| electron transport complex protein RnfB [Yersinia pestis biovar Microtus str. 91001] gi|108807599|ref|YP_651515.1| electron transport complex protein RnfB [Yersinia pestis Antiqua] gi|108811875|ref|YP_647642.1| electron transport complex protein RnfB [Yersinia pestis Nepal516] gi|149365836|ref|ZP_01887871.1| inner membrane iron-sulfur protein in SoxR-reducing complex [Yersinia pestis CA88-4125] gi|162420711|ref|YP_001606697.1| electron transport complex protein RnfB [Yersinia pestis Angola] gi|165927379|ref|ZP_02223211.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165938163|ref|ZP_02226722.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia pestis biovar Orientalis str. IP275] gi|166010629|ref|ZP_02231527.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166210969|ref|ZP_02237004.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|167400916|ref|ZP_02306422.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167420206|ref|ZP_02311959.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425000|ref|ZP_02316753.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|218929341|ref|YP_002347216.1| electron transport complex protein RnfB [Yersinia pestis CO92] gi|229894931|ref|ZP_04510109.1| inner membrane iron-sulfur protein in SoxR-reducing complex [Yersinia pestis Pestoides A] gi|229897673|ref|ZP_04512829.1| inner membrane iron-sulfur protein in SoxR-reducing complex [Yersinia pestis biovar Orientalis str. PEXU2] gi|229898319|ref|ZP_04513466.1| inner membrane iron-sulfur protein in SoxR-reducing complex [Yersinia pestis biovar Orientalis str. India 195] gi|229902178|ref|ZP_04517299.1| inner membrane iron-sulfur protein in SoxR-reducing complex [Yersinia pestis Nepal516] gi|270490650|ref|ZP_06207724.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia pestis KIM D27] gi|294503722|ref|YP_003567784.1| electron transport complex protein RnfB [Yersinia pestis Z176003] gi|24638185|sp|Q8ZEC9|RNFB_YERPE RecName: Full=Electron transport complex protein rnfB gi|122979617|sp|Q1C7K2|RNFB_YERPA RecName: Full=Electron transport complex protein rnfB gi|123073406|sp|Q1CIY8|RNFB_YERPN RecName: Full=Electron transport complex protein rnfB gi|226735436|sp|A9R8U7|RNFB_YERPG RecName: Full=Electron transport complex protein rnfB gi|21958920|gb|AAM85650.1|AE013811_3 hypothetical protein y2086 [Yersinia pestis KIM 10] gi|45436705|gb|AAS62259.1| putative iron-sulfur protein [Yersinia pestis biovar Microtus str. 91001] gi|108775523|gb|ABG18042.1| iron-sulfur protein [Yersinia pestis Nepal516] gi|108779512|gb|ABG13570.1| putative iron-sulfur protein [Yersinia pestis Antiqua] gi|115347952|emb|CAL20874.1| putative iron-sulfur protein [Yersinia pestis CO92] gi|149292249|gb|EDM42323.1| inner membrane iron-sulfur protein in SoxR-reducing complex [Yersinia pestis CA88-4125] gi|162353526|gb|ABX87474.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia pestis Angola] gi|165913824|gb|EDR32442.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia pestis biovar Orientalis str. IP275] gi|165920645|gb|EDR37893.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165990331|gb|EDR42632.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166208149|gb|EDR52629.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|166961901|gb|EDR57922.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049769|gb|EDR61177.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167056187|gb|EDR65965.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229681074|gb|EEO77169.1| inner membrane iron-sulfur protein in SoxR-reducing complex [Yersinia pestis Nepal516] gi|229688609|gb|EEO80678.1| inner membrane iron-sulfur protein in SoxR-reducing complex [Yersinia pestis biovar Orientalis str. India 195] gi|229694010|gb|EEO84059.1| inner membrane iron-sulfur protein in SoxR-reducing complex [Yersinia pestis biovar Orientalis str. PEXU2] gi|229702026|gb|EEO90047.1| inner membrane iron-sulfur protein in SoxR-reducing complex [Yersinia pestis Pestoides A] gi|262362158|gb|ACY58879.1| electron transport complex protein RnfB [Yersinia pestis D106004] gi|262365491|gb|ACY62048.1| electron transport complex protein RnfB [Yersinia pestis D182038] gi|270339154|gb|EFA49931.1| electron transport complex, RnfABCDGE type, B subunit [Yersinia pestis KIM D27] gi|294354181|gb|ADE64522.1| electron transport complex protein RnfB [Yersinia pestis Z176003] gi|320014910|gb|ADV98481.1| inner membrane iron-sulfur protein in SoxR-reducing complex [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 188 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 24/78 (30%), Gaps = 10/78 (12%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C C CP AI + + + C C LC CP D Sbjct: 111 FIDEANCIGCTKCIQACPVDAIIGAT----------RAMHTVLSDLCTGCDLCVAPCPTD 160 Query: 117 AIVEGPNFEFATETRQEL 134 I P + +L Sbjct: 161 CIEMIPVATTTANWKWDL 178 >gi|330501362|ref|YP_004378231.1| formate dehydrogenase subunit alpha [Pseudomonas mendocina NK-01] gi|328915648|gb|AEB56479.1| formate dehydrogenase, alpha subunit [Pseudomonas mendocina NK-01] Length = 944 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 24/81 (29%), Gaps = 3/81 (3%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T G D +C+ CG C Sbjct: 157 YFSYDPSKCIVCNRCVRACEEVQGTFALTIDGRGFDSRVAAGQAEDFLDSECVSCGACVN 216 Query: 112 ACPVDAIVEGPNFEFATETRQ 132 ACP ++E E R Sbjct: 217 ACPTATLMEKSVIELGQAERS 237 >gi|302039151|ref|YP_003799473.1| 2-ketoisovalerate ferredoxin reductase subunits gamma/delta [Candidatus Nitrospira defluvii] gi|300607215|emb|CBK43548.1| 2-ketoisovalerate ferredoxin reductase, fused gamma and delta subunit [Candidatus Nitrospira defluvii] Length = 305 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 10/65 (15%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++C C LC CP I++ + R ID C C +C CP A+V Sbjct: 243 DKCNGCWLCFVYCPDGVISMNTDDRPV----------IDYDHCKGCQICVHECPTHALVA 292 Query: 121 GPNFE 125 E Sbjct: 293 EREQE 297 Score = 34.3 bits (77), Expect = 5.1, Method: Composition-based stats. Identities = 12/37 (32%), Positives = 14/37 (37%) Query: 87 HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 G RT R + KC C LC CP I + Sbjct: 229 ETGGWRTFRPVLVADKCNGCWLCFVYCPDGVISMNTD 265 >gi|225025860|ref|ZP_03715052.1| hypothetical protein EUBHAL_00088 [Eubacterium hallii DSM 3353] gi|224956811|gb|EEG38020.1| hypothetical protein EUBHAL_00088 [Eubacterium hallii DSM 3353] Length = 307 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 31/78 (39%), Gaps = 12/78 (15%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C+ C CE +CP A + V ID KCI CG C + C A+ Sbjct: 60 QNCVGCGNCEVVCPTGASNL------------NVPGKIDHTKCIACGKCIDVCYHRALEM 107 Query: 121 GPNFEFATETRQELYYDK 138 + E ELY D+ Sbjct: 108 SGKWMTVEELMGELYKDR 125 Score = 34.3 bits (77), Expect = 6.5, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 13/51 (25%), Gaps = 8/51 (15%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 C C + + C+ CG C+ CP A Sbjct: 34 NGCPLRCKWCCNPESQELKPVVMFK--------AQNCVGCGNCEVVCPTGA 76 >gi|254459827|ref|ZP_05073243.1| iron-sulfur cluster-binding protein [Rhodobacterales bacterium HTCC2083] gi|206676416|gb|EDZ40903.1| iron-sulfur cluster-binding protein [Rhodobacteraceae bacterium HTCC2083] Length = 648 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 9/82 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C C ++CP+ A+ S + C+ CGLC CP AI Sbjct: 496 DTDACTLCLSCVSLCPSGALGDNSD---------LPQLRFQEDACLQCGLCSNICPEKAI 546 Query: 119 VEGPNFEFATETRQELYYDKER 140 P + + ++E Sbjct: 547 TLKPQVDLTDNAFNQRVLNEEE 568 Score = 38.9 bits (89), Expect = 0.25, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 19/53 (35%), Gaps = 11/53 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C +CP AIT ID + C CG C CP AI Sbjct: 276 CSNCLDVCPTGAITPAGE-----------HVSIDPMICAGCGSCSAVCPSGAI 317 >gi|167770396|ref|ZP_02442449.1| hypothetical protein ANACOL_01739 [Anaerotruncus colihominis DSM 17241] gi|167667403|gb|EDS11533.1| hypothetical protein ANACOL_01739 [Anaerotruncus colihominis DSM 17241] Length = 1181 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 24/72 (33%), Gaps = 14/72 (19%) Query: 57 PNGEERCIACKLCEAICPAQA-----ITIESGPRCHDGTR---------RTVRYDIDMIK 102 + CI C C +CP +T E + +G + I ++ Sbjct: 689 CWIPDNCIQCNFCSYVCPHAVIRPAVMTAEEAEKAPEGMKMVDMTGMPGYKFGMTISVLD 748 Query: 103 CIYCGLCQEACP 114 C CG C CP Sbjct: 749 CTGCGSCANVCP 760 >gi|164686674|ref|ZP_02210702.1| hypothetical protein CLOBAR_00269 [Clostridium bartlettii DSM 16795] gi|164604064|gb|EDQ97529.1| hypothetical protein CLOBAR_00269 [Clostridium bartlettii DSM 16795] Length = 455 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 31/77 (40%), Gaps = 10/77 (12%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 ++ C C+ C +CP AIT E ID KC+ CG C + C Sbjct: 4 NIDKDLCTGCQECVKVCPVSAITGEPHKPQE----------IDADKCVICGQCVQVCKSY 53 Query: 117 AIVEGPNFEFATETRQE 133 A + EF T +QE Sbjct: 54 ASIIDHGEEFVTNKKQE 70 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 11/29 (37%), Positives = 14/29 (48%) Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + +ID C C C + CPV AI P Sbjct: 1 MIVNIDKDLCTGCQECVKVCPVSAITGEP 29 >gi|161527803|ref|YP_001581629.1| ATPase RIL [Nitrosopumilus maritimus SCM1] gi|160339104|gb|ABX12191.1| ABC transporter related [Nitrosopumilus maritimus SCM1] Length = 595 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 1/64 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C K C C +SG C + + ID C CG+C + CP DAI Sbjct: 9 DHELCQP-KKCGLECIKYCPVNKSGADCIVLNEESKKAQIDEDICNGCGICVKVCPFDAI 67 Query: 119 VEGP 122 Sbjct: 68 TIVN 71 >gi|149183199|ref|ZP_01861646.1| dihydropyrimidine dehydrogenase [Bacillus sp. SG-1] gi|148849095|gb|EDL63298.1| dihydropyrimidine dehydrogenase [Bacillus sp. SG-1] Length = 428 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 20/63 (31%), Gaps = 4/63 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117 + CI C C C + + G C+ C LC CPVD A Sbjct: 338 NNDVCINCNKCHIACEDTSHQCIDMLKDSSGNSYLKV---REEDCVGCNLCSIVCPVDGA 394 Query: 118 IVE 120 I Sbjct: 395 IDM 397 >gi|118443000|ref|YP_877778.1| hydrogenase (Fe) large chain [Clostridium novyi NT] gi|118133456|gb|ABK60500.1| hydrogenase (Fe) large chain [Clostridium novyi NT] Length = 443 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 10/66 (15%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 Y E+C+ C C +CP I+ + R+ ID KC+ CG C AC Sbjct: 24 IFYFQITEKCVGCTKCARVCPVSCISG----------KVKERHVIDTTKCVKCGQCISAC 73 Query: 114 PVDAIV 119 P+ A+ Sbjct: 74 PMGALP 79 >gi|317497875|ref|ZP_07956185.1| 4Fe-4S binding domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316894856|gb|EFV17028.1| 4Fe-4S binding domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 350 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 8/89 (8%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 L+ + E++C AC C ICP +I+++ + ID KCI C LC++ Sbjct: 1 MLKSVLDDEKKCCACFSCMNICPKNSISMKKEKNGAIYPK------IDSEKCIGCHLCRK 54 Query: 112 ACPVDAIVEGPNFE--FATETRQELYYDK 138 CP++ E + +AT ++ E ++K Sbjct: 55 VCPIENKAETEKLKKVYATYSKNEEIHEK 83 >gi|298674384|ref|YP_003726134.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein [Methanohalobium evestigatum Z-7303] gi|298287372|gb|ADI73338.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanohalobium evestigatum Z-7303] Length = 353 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 11/66 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+C+ C+ C +C A+ +E G +D C G C E+CP AI Sbjct: 188 EPEKCVGCETCIDMCAWGALKMEDGKAV-----------VDTELCKGEGFCVESCPEGAI 236 Query: 119 VEGPNF 124 V NF Sbjct: 237 VPPENF 242 >gi|296452095|ref|ZP_06893806.1| nitroreductase fused to ferredoxin domain protein [Clostridium difficile NAP08] gi|296877451|ref|ZP_06901484.1| nitroreductase fused to ferredoxin domain protein [Clostridium difficile NAP07] gi|296259045|gb|EFH05929.1| nitroreductase fused to ferredoxin domain protein [Clostridium difficile NAP08] gi|296431463|gb|EFH17277.1| nitroreductase fused to ferredoxin domain protein [Clostridium difficile NAP07] Length = 260 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 31/95 (32%), Gaps = 11/95 (11%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 +E CI C LC+ CP I IE+ I C+ CG Sbjct: 1 MNMKYQHIIKVDKELCIGCGLCKNDCPVNNIIIENKKSV-----------IKKQDCLMCG 49 Query: 108 LCQEACPVDAIVEGPNFEFATETRQELYYDKERLL 142 C CP AI E E + D + LL Sbjct: 50 HCAAICPQKAITLTGFDEPPIELTNKPNLDSDELL 84 >gi|268323253|emb|CBH36841.1| putative pyruvate oxidoreductase, delta and gamma chain [uncultured archaeon] Length = 300 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/106 (20%), Positives = 35/106 (33%), Gaps = 21/106 (19%) Query: 29 KAKTTINYPFEKGST-----------SPRFRGEHALRRYPNGEERCIACKLCEAICPAQA 77 K T I+ PFE + R G + R + C C +C + CP Sbjct: 202 KKSTVISVPFEPATVSSPAINATGNTPLRMTGNWRVFRPVWNYDSCTRCMICVSRCPDGC 261 Query: 78 ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 I + + D C C +C E CP +++ + Sbjct: 262 ILVNEDGFPYT----------DYDNCKGCLICVEECPTNSLGKVRE 297 >gi|227829887|ref|YP_002831666.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus islandicus L.S.2.15] gi|284997011|ref|YP_003418778.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Sulfolobus islandicus L.D.8.5] gi|227456334|gb|ACP35021.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus islandicus L.S.2.15] gi|284444906|gb|ADB86408.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Sulfolobus islandicus L.D.8.5] Length = 92 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 25/82 (30%), Gaps = 2/82 (2%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100 G P + CIA C CP P ++ ++ Sbjct: 12 GPVDPPKVLGIHGTIVGVDFDICIADGSCITACPVNVFRWTDTPGNPVSEKKADPFN--E 69 Query: 101 IKCIYCGLCQEACPVDAIVEGP 122 CI+C C CPV AI P Sbjct: 70 QACIFCMACVNVCPVAAIDVKP 91 >gi|160903178|ref|YP_001568759.1| dihydroorotate dehydrogenase family protein [Petrotoga mobilis SJ95] gi|160360822|gb|ABX32436.1| dihydroorotate dehydrogenase family protein [Petrotoga mobilis SJ95] Length = 363 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 24/69 (34%), Gaps = 9/69 (13%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L +E+C C LC C AI + ID KC CGLC Sbjct: 303 LIFPAVNDEKCTECALCVKSCVYDAIHLIKELHSV---------RIDTNKCAGCGLCVTR 353 Query: 113 CPVDAIVEG 121 C +A+ Sbjct: 354 CNFNALSLS 362 >gi|229541980|ref|ZP_04431040.1| dihydroorotate dehydrogenase family protein [Bacillus coagulans 36D1] gi|229326400|gb|EEN92075.1| dihydroorotate dehydrogenase family protein [Bacillus coagulans 36D1] Length = 426 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 21/65 (32%), Gaps = 4/65 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117 EE CI C C C A G + C+ C LC CP D A Sbjct: 338 NEEHCIHCNKCYIACEDTAHQCIDRLVDTSGK---SILRVREEDCVGCNLCSLVCPSDGA 394 Query: 118 IVEGP 122 I P Sbjct: 395 ITMIP 399 >gi|15639924|ref|NP_219375.1| pyruvate oxidoreductase [Treponema pallidum subsp. pallidum str. Nichols] gi|189026162|ref|YP_001933934.1| pyruvate oxidoreductase [Treponema pallidum subsp. pallidum SS14] gi|3323259|gb|AAC65895.1| pyruvate oxidoreductase [Treponema pallidum subsp. pallidum str. Nichols] gi|189018737|gb|ACD71355.1| pyruvate oxidoreductase [Treponema pallidum subsp. pallidum SS14] gi|291060294|gb|ADD73029.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Treponema pallidum subsp. pallidum str. Chicago] Length = 1184 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 21/73 (28%), Gaps = 16/73 (21%) Query: 58 NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRYDID--MI 101 CI C C +CP A + + ++ I Sbjct: 691 WDPSVCIQCGQCAMVCPHAVIRMKAYDGKELEHAPSKFASCDYKGKEFGEAKFTIQVSPE 750 Query: 102 KCIYCGLCQEACP 114 C CGLC + CP Sbjct: 751 DCTGCGLCVQQCP 763 Score = 37.0 bits (84), Expect = 0.87, Method: Composition-based stats. Identities = 11/35 (31%), Positives = 11/35 (31%), Gaps = 4/35 (11%) Query: 100 MIKCIYCGLCQEACPVDAIVE----GPNFEFATET 130 CI CG C CP I G E A Sbjct: 693 PSVCIQCGQCAMVCPHAVIRMKAYDGKELEHAPSK 727 >gi|120597257|ref|YP_961831.1| glycyl-radical activating family protein [Shewanella sp. W3-18-1] gi|146291318|ref|YP_001181742.1| glycyl-radical activating family protein [Shewanella putrefaciens CN-32] gi|120557350|gb|ABM23277.1| glycyl-radical enzyme activating protein family [Shewanella sp. W3-18-1] gi|145563008|gb|ABP73943.1| glycyl-radical enzyme activating protein family [Shewanella putrefaciens CN-32] Length = 306 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 12/61 (19%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 CI C C + CP AI ID CI+CG C E CP A+V+ Sbjct: 59 RNCIHCGRCVSACPVGAIDASRQGL------------IDRNACIHCGACAEVCPAGAMVQ 106 Query: 121 G 121 Sbjct: 107 S 107 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 16/42 (38%), Positives = 17/42 (40%), Gaps = 3/42 (7%) Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 A S P YD CI+CG C ACPV AI Sbjct: 38 ACKWCSNPESQHTEPEIFYYD---RNCIHCGRCVSACPVGAI 76 >gi|315186728|gb|EFU20486.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Spirochaeta thermophila DSM 6578] Length = 1195 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 20/73 (27%), Gaps = 16/73 (21%) Query: 58 NGEERCIACKLCEAICPAQ----------------AITIESGPRCHDGTRRTVRYDIDMI 101 + CI C C A+CP A + + D I Sbjct: 693 WDPDVCIQCGDCSAVCPHAVIRLKVYEEKHLEGAPAGFKFTDAKGKDFAGLKFTIQISPE 752 Query: 102 KCIYCGLCQEACP 114 C CG C CP Sbjct: 753 DCTGCGACVNICP 765 >gi|307719342|ref|YP_003874874.1| pyruvate-flavodoxin oxidoreductase [Spirochaeta thermophila DSM 6192] gi|306533067|gb|ADN02601.1| pyruvate-flavodoxin oxidoreductase [Spirochaeta thermophila DSM 6192] Length = 1195 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 20/73 (27%), Gaps = 16/73 (21%) Query: 58 NGEERCIACKLCEAICPAQ----------------AITIESGPRCHDGTRRTVRYDIDMI 101 + CI C C A+CP A + + D I Sbjct: 693 WDPDVCIQCGDCSAVCPHAVIRLKVYEEKHLEGAPAGFKFTDAKGKDFAGLKFTIQISPE 752 Query: 102 KCIYCGLCQEACP 114 C CG C CP Sbjct: 753 DCTGCGACVNICP 765 >gi|302344389|ref|YP_003808918.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfarculus baarsii DSM 2075] gi|301641002|gb|ADK86324.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfarculus baarsii DSM 2075] Length = 356 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 10/63 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ C C+ C C +AI + ID+ +CI CGLC CP +A+ Sbjct: 276 DKDACTGCETCLDRCQMKAIVMGDDGLA----------RIDLDRCIGCGLCVTTCPTEAL 325 Query: 119 VEG 121 Sbjct: 326 TLQ 328 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 4/67 (5%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 N C C C + A+ + P + D C C C + C + Sbjct: 238 QNPAGMCNCCGDCCGVLR--ALNLHPKPAEIVFSNHFAVVD--KDACTGCETCLDRCQMK 293 Query: 117 AIVEGPN 123 AIV G + Sbjct: 294 AIVMGDD 300 >gi|302342304|ref|YP_003806833.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfarculus baarsii DSM 2075] gi|301638917|gb|ADK84239.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfarculus baarsii DSM 2075] Length = 352 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 11/63 (17%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 E C+ C LCE C + ++M +CI CGLC CP +A Sbjct: 272 YDAEACVMCGLCEDRCQMDVFSPGDDAMI-----------LNMDRCIGCGLCVTTCPSEA 320 Query: 118 IVE 120 + Sbjct: 321 LKL 323 >gi|302341919|ref|YP_003806448.1| molybdopterin oxidoreductase [Desulfarculus baarsii DSM 2075] gi|301638532|gb|ADK83854.1| molybdopterin oxidoreductase [Desulfarculus baarsii DSM 2075] Length = 376 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 5/75 (6%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCIYCGLC 109 RCI C C + C + + P + R +D KC +CG C Sbjct: 162 MIVRDFSRCIKCGRCVSACNDVQVNLAIAPPDEAALKAGLLESDWRPVVDYAKCTHCGQC 221 Query: 110 QEACPVDAIVEGPNF 124 +ACPV A+ E + Sbjct: 222 IQACPVGALFEKKAY 236 >gi|270669404|ref|ZP_06222601.1| Electron transport complex protein rnfB [Haemophilus influenzae HK1212] gi|270316570|gb|EFA28404.1| Electron transport complex protein rnfB [Haemophilus influenzae HK1212] Length = 180 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 22/66 (33%), Gaps = 10/66 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C C CP AI + + I C C LC CP D Sbjct: 96 FIDENMCIGCTKCIQACPVDAIIGTNK----------AMHTIIPDLCTGCELCVAPCPTD 145 Query: 117 AIVEGP 122 I+ P Sbjct: 146 CILMIP 151 >gi|261880458|ref|ZP_06006885.1| electron transport complex [Prevotella bergensis DSM 17361] gi|270332797|gb|EFA43583.1| electron transport complex [Prevotella bergensis DSM 17361] Length = 313 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 26/86 (30%), Gaps = 11/86 (12%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P + + + CI C C C AI IE+ Sbjct: 198 PKNRRIYVQCVNMDKGAVARKACQVACIGCGKCLKACRFDAINIENNLSY---------- 247 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGP 122 ID KC C C + CP +AI Sbjct: 248 -IDYSKCKLCTKCVDECPTNAIAMVN 272 Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 29/80 (36%), Gaps = 14/80 (17%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK-----------CIYCGLCQE 111 C +C C CP I + RR ++M K CI CG C + Sbjct: 176 CTSCGACVKACP---RHIIELRKKGPKNRRIYVQCVNMDKGAVARKACQVACIGCGKCLK 232 Query: 112 ACPVDAIVEGPNFEFATETR 131 AC DAI N + ++ Sbjct: 233 ACRFDAINIENNLSYIDYSK 252 >gi|218130737|ref|ZP_03459541.1| hypothetical protein BACEGG_02328 [Bacteroides eggerthii DSM 20697] gi|217987081|gb|EEC53412.1| hypothetical protein BACEGG_02328 [Bacteroides eggerthii DSM 20697] Length = 427 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 7/65 (10%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C C C IC AI I ID KCI CGLCQ+ACP+ + Sbjct: 12 KYCTGCMACSDICRHDAIKIVERNCLPF-------VQIDADKCINCGLCQKACPIVTPIN 64 Query: 121 GPNFE 125 FE Sbjct: 65 KNRFE 69 >gi|156089325|ref|XP_001612069.1| ABC transporter, ATP-binding domain containing protein [Babesia bovis] gi|154799323|gb|EDO08501.1| ABC transporter, ATP-binding domain containing protein [Babesia bovis] Length = 616 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 1/70 (1%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 LR ++C K C C ++G +C + I CI CG+C + Sbjct: 20 LRVAIVSTDKCKP-KKCRQECKRNCPVAKAGKQCIIADPTSKIAFISETLCIGCGICVKK 78 Query: 113 CPVDAIVEGP 122 CP +AI Sbjct: 79 CPFEAITIIN 88 >gi|126731572|ref|ZP_01747378.1| dihydropyrimidine dehydrogenase [Sagittula stellata E-37] gi|126708108|gb|EBA07168.1| dihydropyrimidine dehydrogenase [Sagittula stellata E-37] Length = 434 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 8/76 (10%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI C C A C E ++++ +C+ Sbjct: 330 QYLNLNYITKARIDQDACIKCGRCFAAC-------EDTSHQAIWMHEDRTFEVNDAECVA 382 Query: 106 CGLCQEACPV-DAIVE 120 C LC + CPV D I Sbjct: 383 CNLCLDVCPVEDCITM 398 >gi|114705202|ref|ZP_01438110.1| probable nad-dependent formate dehydrogenase alpha subunit protein [Fulvimarina pelagi HTCC2506] gi|114539987|gb|EAU43107.1| probable nad-dependent formate dehydrogenase alpha subunit protein [Fulvimarina pelagi HTCC2506] Length = 948 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 4/75 (5%) Query: 55 RYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + +CI C C C A+T+E + T + +C+ CG C Sbjct: 159 YFTFDSSKCIVCSRCVRACNEVQGTFALTVEGRGFDSRISAGTPVDEFLTSECVSCGACV 218 Query: 111 EACPVDAIVEGPNFE 125 +ACP +A+ E E Sbjct: 219 QACPTEALQEKTVKE 233 >gi|88706626|ref|ZP_01104329.1| Electron transport complex protein rnfC [Congregibacter litoralis KT71] gi|88699122|gb|EAQ96238.1| Electron transport complex protein rnfC [Congregibacter litoralis KT71] Length = 587 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 29/96 (30%), Gaps = 9/96 (9%) Query: 19 AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78 + L P K + G L P + CI C LC CPA+ + Sbjct: 331 MMGVTL-------ADHRCPVIKTTNCLLVPGPGELPE-PEPAQACIRCGLCAEACPAR-L 381 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + + + CI CG C CP Sbjct: 382 LPQQLYWFARAQNHEQLEEHHLFDCIECGACSYVCP 417 >gi|320160663|ref|YP_004173887.1| bidirectional hydrogenase U subunit [Anaerolinea thermophila UNI-1] gi|319994516|dbj|BAJ63287.1| bidirectional hydrogenase U subunit [Anaerolinea thermophila UNI-1] Length = 240 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 28/83 (33%), Gaps = 4/83 (4%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDID 99 PRF + + +Y RCI C C +C A T + R T Sbjct: 132 YLHPRFMLDGSHPKYEVDHNRCILCGRCVRVCEEIEGAHTRDLRNRGIRTMVITDFDTPW 191 Query: 100 MIK--CIYCGLCQEACPVDAIVE 120 C CG C CP A+ E Sbjct: 192 GESPTCTGCGKCVHVCPTGALAE 214 >gi|312137143|ref|YP_004004480.1| ABC transporter [Methanothermus fervidus DSM 2088] gi|311224862|gb|ADP77718.1| ABC transporter related protein [Methanothermus fervidus DSM 2088] Length = 592 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 1/67 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++RC K C +C + G ++T + I C CG+C + CP DAI Sbjct: 8 DKDRCQP-KKCGYLCLEYCPGVRMGEDTIVIHKKTKKPIISEKLCSGCGICVKKCPFDAI 66 Query: 119 VEGPNFE 125 E Sbjct: 67 NIINLPE 73 >gi|296102198|ref|YP_003612344.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295056657|gb|ADF61395.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 1174 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 P A +++ R G + + C C LC E CP Sbjct: 700 PHSAIRAKVVSPDAMESAPSSLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757 Query: 116 --------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 758 KDRQNPDIKAINMMSRLEHVEEEK 781 >gi|283833001|ref|ZP_06352742.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Citrobacter youngae ATCC 29220] gi|291071613|gb|EFE09722.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Citrobacter youngae ATCC 29220] Length = 1174 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 P A +++ R G + + C C LC E CP Sbjct: 700 PHSAIRAKVVSPEAMESAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757 Query: 116 --------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 758 KDRQNPEIKAINMMSRLEHVEEEK 781 >gi|237859143|gb|ACR23747.1| RnfB [Acetobacterium woodii DSM 1030] Length = 333 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 26/63 (41%), Positives = 28/63 (44%), Gaps = 9/63 (14%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E CIAC LC CP AIT E Y ID CI CG+C + C AI Sbjct: 277 ENCIACGLCAKNCPVNAITGEIKKPP---------YVIDHDMCIGCGICFDKCRKSAIEM 327 Query: 121 GPN 123 PN Sbjct: 328 RPN 330 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 34/105 (32%), Gaps = 22/105 (20%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + + + CIAC C C AIT+E+ D + Sbjct: 190 VPEAQEVIVKCHNFDKGKIARLSCTTACIACGACVKACRFDAITVENNCAKIDYDKCRQC 249 Query: 96 YD----------------------IDMIKCIYCGLCQEACPVDAI 118 Y+ I CI CGLC + CPV+AI Sbjct: 250 YECVDKCPMNCISGDVEYGKSTAYIIEENCIACGLCAKNCPVNAI 294 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 5/78 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQEAC 113 E+C +C C CP +T+ + H+ + + CI CG C +AC Sbjct: 168 DPEKCTSCGKCVEACPKSIMTLVPEAQEVIVKCHNFDKGKIARLSCTTACIACGACVKAC 227 Query: 114 PVDAIVEGPNFEFATETR 131 DAI N + Sbjct: 228 RFDAITVENNCAKIDYDK 245 Score = 35.5 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 10/65 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C+A+CP AI I +D KC CG C EACP + Sbjct: 138 CRYGCLGYGTCKAVCPFDAIVIGEDGLPK----------VDPEKCTSCGKCVEACPKSIM 187 Query: 119 VEGPN 123 P Sbjct: 188 TLVPE 192 >gi|237731645|ref|ZP_04562126.1| pyruvate-flavodoxin oxidoreductase [Citrobacter sp. 30_2] gi|226907184|gb|EEH93102.1| pyruvate-flavodoxin oxidoreductase [Citrobacter sp. 30_2] Length = 1174 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 P A +++ R G + + C C LC E CP Sbjct: 700 PHSAIRAKVVSPEAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757 Query: 116 --------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 758 KDRQNPEIKAINMMSRLEHVEEEK 781 >gi|197117746|ref|YP_002138173.1| electron transfer flavoprotein subunit alpha [Geobacter bemidjiensis Bem] gi|197087106|gb|ACH38377.1| electron transfer flavoprotein, alpha subunit [Geobacter bemidjiensis Bem] Length = 452 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 43/122 (35%), Gaps = 30/122 (24%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACK-LCEAICPAQAITIESGPRCHDGTRRTVRYD 97 E + RG+ L E +CIAC C++ CP I + Sbjct: 3 EAKPKLKKPRGKVRLL-----EGKCIACGARCQSSCPVDGIQMSDAGEP----------Q 47 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIV 157 I++ KCI C C +ACP A+ E++Y KE L + + Sbjct: 48 IELSKCIGCLKCVKACPGSAL--------------EIFYTKEELEILAALAGQQDLAEDE 93 Query: 158 TD 159 D Sbjct: 94 AD 95 >gi|158521885|ref|YP_001529755.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfococcus oleovorans Hxd3] gi|158510711|gb|ABW67678.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus oleovorans Hxd3] Length = 362 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 11/62 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C C C +A+T+++ + CI CG C ACP +A+ Sbjct: 292 NPDNCTGCGTCVEHCQMEALTLDNDMVVLQESW-----------CIGCGNCAGACPSEAL 340 Query: 119 VE 120 V Sbjct: 341 VM 342 >gi|87118385|ref|ZP_01074284.1| electron transport complex protein RnfC [Marinomonas sp. MED121] gi|86166019|gb|EAQ67285.1| electron transport complex protein RnfC [Marinomonas sp. MED121] Length = 1251 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 6/79 (7%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C +CE CPA + + ++ CI CG C CP +I Sbjct: 372 QACIRCGMCEQACPAS-LLPQQLLWFSKSQEHEKAEHHNLFDCIECGACSYVCP-SSIPL 429 Query: 121 GPNFEFAT----ETRQELY 135 + E+R+ Sbjct: 430 VQYYRHTKSAIRESREAAV 448 >gi|313148174|ref|ZP_07810367.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Bacteroides fragilis 3_1_12] gi|313136941|gb|EFR54301.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Bacteroides fragilis 3_1_12] Length = 387 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 6/56 (10%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 C C C ++C AI ++ + + I+ +CI CGLC + CPV Sbjct: 8 YDCCGCTACASVCNKGAIIMQEDEQG------FLYPHINTTQCINCGLCNKVCPVF 57 >gi|294501167|ref|YP_003564867.1| dihydroorotate dehydrogenase [Bacillus megaterium QM B1551] gi|294351104|gb|ADE71433.1| dihydroorotate dehydrogenase [Bacillus megaterium QM B1551] Length = 426 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 20/63 (31%), Gaps = 4/63 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117 + CI C C C + + G C+ C LC CPVD A Sbjct: 338 DPDTCINCNKCHISCEDTSHQCIDMLKDPSGKSYLKV---REEDCVGCNLCSIVCPVDGA 394 Query: 118 IVE 120 I Sbjct: 395 ISM 397 >gi|262402646|ref|ZP_06079207.1| electron transport complex protein RnfC [Vibrio sp. RC586] gi|262351428|gb|EEZ00561.1| electron transport complex protein RnfC [Vibrio sp. RC586] Length = 830 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 20/61 (32%), Gaps = 9/61 (14%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI----KCIYCGLCQEAC 113 + E CI C C A + P+ + +D CI CG C C Sbjct: 373 DHEMACIRCGQCA-----DACPVSLLPQQLQWHAKAQEFDKCEELNLKDCIECGACAYVC 427 Query: 114 P 114 P Sbjct: 428 P 428 Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats. Identities = 9/17 (52%), Positives = 11/17 (64%) Query: 99 DMIKCIYCGLCQEACPV 115 + CI CG C +ACPV Sbjct: 374 HEMACIRCGQCADACPV 390 >gi|258627117|ref|ZP_05721913.1| RnfC-related protein [Vibrio mimicus VM603] gi|258580635|gb|EEW05588.1| RnfC-related protein [Vibrio mimicus VM603] Length = 820 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 20/61 (32%), Gaps = 9/61 (14%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI----KCIYCGLCQEAC 113 + E CI C C A + P+ + +D CI CG C C Sbjct: 373 DHEMACIRCGQCA-----DACPVSLLPQQLQWHAKAQEFDKCEELNLKDCIECGACAYVC 427 Query: 114 P 114 P Sbjct: 428 P 428 Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats. Identities = 9/17 (52%), Positives = 11/17 (64%) Query: 99 DMIKCIYCGLCQEACPV 115 + CI CG C +ACPV Sbjct: 374 HEMACIRCGQCADACPV 390 >gi|297568097|ref|YP_003689441.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Desulfurivibrio alkaliphilus AHT2] gi|296924012|gb|ADH84822.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Desulfurivibrio alkaliphilus AHT2] Length = 606 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 4/69 (5%) Query: 54 RRYPNGEERCIACKLC----EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 + + + E C C +C Q +T E ++ I+ CI CG C Sbjct: 531 KPFHSVTENCTGCTMCLRLGCPAINWQPLTPEEAKAMGKKEKQKGYALINEDMCIGCGQC 590 Query: 110 QEACPVDAI 118 E C +AI Sbjct: 591 YELCKFEAI 599 >gi|253688411|ref|YP_003017601.1| electron transport complex, RnfABCDGE type, B subunit [Pectobacterium carotovorum subsp. carotovorum PC1] gi|259493852|sp|C6DH16|RNFB_PECCP RecName: Full=Electron transport complex protein rnfB gi|251754989|gb|ACT13065.1| electron transport complex, RnfABCDGE type, B subunit [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 192 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 23/73 (31%), Gaps = 10/73 (13%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 A + E CI C C CP AI + + + C C LC Sbjct: 105 PARQVAWIDESNCIGCTKCIQACPVDAIIGSTK----------AVHTVVSDLCTGCDLCV 154 Query: 111 EACPVDAIVEGPN 123 CP D I P Sbjct: 155 APCPTDCIELRPI 167 >gi|167045002|gb|ABZ09666.1| putative 4Fe-4S binding domain protein [uncultured marine crenarchaeote HF4000_APKG8G15] Length = 103 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 1/68 (1%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C LC IC + G +R + +CI G C CP AI Sbjct: 12 QMCIGCALCVEICTTLGPDVLRVKPVE-GWKRGKAFVFYPERCISDGACIGVCPTKAIFW 70 Query: 121 GPNFEFAT 128 +F Sbjct: 71 MRPMDFTV 78 >gi|281358700|ref|ZP_06245177.1| hydrogenase, Fe-only [Victivallis vadensis ATCC BAA-548] gi|281314826|gb|EFA98862.1| hydrogenase, Fe-only [Victivallis vadensis ATCC BAA-548] Length = 676 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 9/86 (10%) Query: 59 GEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 +C+ C C +C A+ S D+ +C+ CG C + CP Sbjct: 145 DPNKCVLCGDCVRVCSEVQSVGALDFASRGSNARVVPAFDN-DLSEGECVNCGQCAQVCP 203 Query: 115 VDAIVEGPNFEFATETRQELYYDKER 140 AIV + + E YD E+ Sbjct: 204 TGAIVAKSDADKVWEA----IYDPEK 225 >gi|153815271|ref|ZP_01967939.1| hypothetical protein RUMTOR_01505 [Ruminococcus torques ATCC 27756] gi|145847333|gb|EDK24251.1| hypothetical protein RUMTOR_01505 [Ruminococcus torques ATCC 27756] Length = 803 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 6/60 (10%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + +++C C C CP Q IT+ + + ID CI+C CQ+ CPV Sbjct: 415 YDSKDKCCGCSACAMACPKQCITMVADKEG------FLYPQIDQELCIHCNKCQQVCPVR 468 Score = 33.9 bits (76), Expect = 7.7, Method: Composition-based stats. Identities = 9/25 (36%), Positives = 10/25 (40%) Query: 101 IKCIYCGLCQEACPVDAIVEGPNFE 125 KC C C ACP I + E Sbjct: 419 DKCCGCSACAMACPKQCITMVADKE 443 >gi|134094045|ref|YP_001099120.1| putative electron transport complex protein: ferredoxin subunit (RfnB) [Herminiimonas arsenicoxydans] gi|133737948|emb|CAL60993.1| Putative electron transport complex, ferredoxin subunit [Herminiimonas arsenicoxydans] Length = 239 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 22/62 (35%), Gaps = 10/62 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C LC CP AI + + I C C LC CPVD I Sbjct: 94 DESLCIGCTLCIQACPVDAIVGAAKQ----------MHTIVTDLCTGCDLCVAPCPVDCI 143 Query: 119 VE 120 Sbjct: 144 AM 145 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 15/28 (53%), Positives = 16/28 (57%) Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAI 118 R ID CI C LC +ACPVDAI Sbjct: 86 RPRPVAVIDESLCIGCTLCIQACPVDAI 113 >gi|150399419|ref|YP_001323186.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanococcus vannielii SB] gi|150012122|gb|ABR54574.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus vannielii SB] Length = 132 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 10/62 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + CI C C CP A++++S + +D +CI C C + CPV+ Sbjct: 76 QKDDNLCIDCGSCVVHCPVGALSVDSDYKIL----------LDEDECIGCKNCAKVCPVN 125 Query: 117 AI 118 AI Sbjct: 126 AI 127 >gi|15920342|ref|NP_376011.1| ferredoxin [Sulfolobus tokodaii str. 7] gi|17380448|sp|P55907|FER1_SULTO RecName: Full=Zinc-containing ferredoxin-1 gi|15621124|dbj|BAB65120.1| 104aa long ferredoxin [Sulfolobus tokodaii str. 7] Length = 104 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 25/84 (29%), Gaps = 2/84 (2%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 G P + CIA C CP P ++ + Sbjct: 22 VYGPVEPPKVLGIHGTIVGVDFDLCIADGSCINACPVNVFQWYDTPGHPASEKKADP--V 79 Query: 99 DMIKCIYCGLCQEACPVDAIVEGP 122 + CI+C C CPV AI P Sbjct: 80 NEQACIFCMACVNVCPVAAIDVKP 103 >gi|226947085|ref|YP_002802158.1| RnfABCDGE type electron transport complex subunit C [Azotobacter vinelandii DJ] gi|17865302|gb|AAL47174.1|AF450501_4 RnfC [Azotobacter vinelandii] gi|226722012|gb|ACO81183.1| Electron transport complex, RnfABCDGE type, C subunit [Azotobacter vinelandii DJ] Length = 496 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 24/75 (32%), Gaps = 2/75 (2%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C C CP +T + + CI CG C CP I Sbjct: 366 DPAPCIRCASCVDACPMG-LTPLDMALYARADDYDGASEYGLRDCILCGCCSYVCPSH-I 423 Query: 119 VEGPNFEFATETRQE 133 F++A + E Sbjct: 424 PLVHYFQYAKGQQDE 438 Score = 35.1 bits (79), Expect = 3.3, Method: Composition-based stats. Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 4/42 (9%) Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 R + D CI C C +ACP + P + A R + Sbjct: 359 RHELPNKDPAPCIRCASCVDACP---MGLTP-LDMALYARAD 396 >gi|310828304|ref|YP_003960661.1| hypothetical protein ELI_2717 [Eubacterium limosum KIST612] gi|308740038|gb|ADO37698.1| hypothetical protein ELI_2717 [Eubacterium limosum KIST612] Length = 375 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 13/65 (20%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++C CK+C+ IC AI+ + ID KC+ CG C CP DAI Sbjct: 195 KKCRDCKVCKDICAMNAIS------------YPEKAVIDHDKCVGCGRCIGICPFDAIA- 241 Query: 121 GPNFE 125 PN E Sbjct: 242 TPNDE 246 >gi|294496330|ref|YP_003542823.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanohalophilus mahii DSM 5219] gi|292667329|gb|ADE37178.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanohalophilus mahii DSM 5219] Length = 541 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 9/69 (13%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY--CGLCQEACP 114 CI C+ CE CP AI + ++ V YD KC+ C C CP Sbjct: 475 EEEAPDCILCRKCEKECPEDAI-----IALEENGKKYVHYD--SEKCLGTSCHRCIAICP 527 Query: 115 VDAIVEGPN 123 VDAI Sbjct: 528 VDAIHYIDI 536 >gi|296137375|ref|YP_003644617.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thiomonas intermedia K12] gi|295797497|gb|ADG32287.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thiomonas intermedia K12] Length = 736 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 24/80 (30%), Gaps = 9/80 (11%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 L RC C C CPA A+ + Sbjct: 587 IPLPHGAGSPLGAIRVDASRCTLCLSCVGACPAGALADNPQTPQLRFIEKN--------- 637 Query: 103 CIYCGLCQEACPVDAIVEGP 122 C+ CGLC + CP DAI P Sbjct: 638 CVQCGLCVKTCPEDAIRLEP 657 Score = 41.6 bits (96), Expect = 0.036, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 16/69 (23%) Query: 66 CKLCEAICPAQAITIESGPRCHD----------------GTRRTVRYDIDMIKCIYCGLC 109 C C IC AQA+ + R + +ID C+ CG C Sbjct: 328 CHACIDICSAQAVHSRARLRPDQTPPIAEADSILPTAAQKKPFVEQIEIDPHLCVGCGAC 387 Query: 110 QEACPVDAI 118 CP A+ Sbjct: 388 TTVCPTGAL 396 >gi|212696414|ref|ZP_03304542.1| hypothetical protein ANHYDRO_00952 [Anaerococcus hydrogenalis DSM 7454] gi|256545289|ref|ZP_05472653.1| conserved domain protein [Anaerococcus vaginalis ATCC 51170] gi|325849213|ref|ZP_08170664.1| ferredoxin [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|212676586|gb|EEB36193.1| hypothetical protein ANHYDRO_00952 [Anaerococcus hydrogenalis DSM 7454] gi|256398970|gb|EEU12583.1| conserved domain protein [Anaerococcus vaginalis ATCC 51170] gi|325480213|gb|EGC83280.1| ferredoxin [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 58 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/65 (38%), Positives = 28/65 (43%), Gaps = 11/65 (16%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 Y E CI+C CE CP QAI Y+ID CI CG C C Sbjct: 1 MAYRIDENTCISCGSCEGECPVQAIEQGDAA-----------YEIDEDACIDCGSCAAVC 49 Query: 114 PVDAI 118 PV+AI Sbjct: 50 PVEAI 54 Score = 34.3 bits (77), Expect = 5.5, Method: Composition-based stats. Identities = 14/27 (51%), Positives = 16/27 (59%) Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGP 122 Y ID CI CG C+ CPV AI +G Sbjct: 3 YRIDENTCISCGSCEGECPVQAIEQGD 29 >gi|218961804|ref|YP_001741579.1| electron transport complex protein rnfB, polyferredoxin subunit (rnfB module) [Candidatus Cloacamonas acidaminovorans] gi|167730461|emb|CAO81373.1| electron transport complex protein rnfB, polyferredoxin subunit (rnfB module) [Candidatus Cloacamonas acidaminovorans] Length = 287 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 11/65 (16%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 ++ ++ CI C LC CPA+AIT+E+ ID KC CG C C Sbjct: 223 KQNCGADKPCIGCSLCAKKCPAEAITVENNIA-----------RIDYGKCTDCGTCATVC 271 Query: 114 PVDAI 118 P AI Sbjct: 272 PTKAI 276 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 10/65 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C A C AI+I++ ID KC CG C ACP I Sbjct: 151 CSYGCVGFNDCIAACKFDAISIDNEGMRV----------IDREKCTGCGACVTACPRKLI 200 Query: 119 VEGPN 123 + P Sbjct: 201 MLVPE 205 Score = 35.1 bits (79), Expect = 3.0, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 26/76 (34%), Gaps = 7/76 (9%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK-------CIYCG 107 E+C C C CP + I + + + + + CI C Sbjct: 177 MRVIDREKCTGCGACVTACPRKLIMLVPESMNVFISCSSKDKNPLPKQNCGADKPCIGCS 236 Query: 108 LCQEACPVDAIVEGPN 123 LC + CP +AI N Sbjct: 237 LCAKKCPAEAITVENN 252 >gi|187250942|ref|YP_001875424.1| FeFe Hydrogenase HydB [Elusimicrobium minutum Pei191] gi|186971102|gb|ACC98087.1| FeFe Hydrogenase HydB (NuoF) [Elusimicrobium minutum Pei191] Length = 620 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 10/66 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L RY EE+C+ C C+ CP AIT E + + KCI CG C A Sbjct: 562 LVRYSVIEEKCVGCTACKRACPVGAITGEVKQKHF----------VHQEKCIKCGQCFSA 611 Query: 113 CPVDAI 118 C AI Sbjct: 612 CKFSAI 617 Score = 38.2 bits (87), Expect = 0.39, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 5/62 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 PN C+ E + +G VRY + KC+ C C+ ACPV Sbjct: 531 PNPVLSCLKSFGHEFDEHVKEKHCPTGKCSSL-----VRYSVIEEKCVGCTACKRACPVG 585 Query: 117 AI 118 AI Sbjct: 586 AI 587 >gi|218780736|ref|YP_002432054.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfatibacillum alkenivorans AK-01] gi|218762120|gb|ACL04586.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfatibacillum alkenivorans AK-01] Length = 266 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 26/83 (31%), Gaps = 12/83 (14%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 G+ + + E C C +CE +CP AI E+ Sbjct: 170 EVPGNHPYKEMVGGISADFIEVSEACTQCGICEDLCPTNAIDYENDVMVDV--------- 220 Query: 98 IDMIKCIYCGLCQEACPVDAIVE 120 CI C C + CP +A Sbjct: 221 ---DSCIRCCACIKGCPENARSM 240 Score = 35.1 bits (79), Expect = 3.1, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 17/42 (40%) Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + P + + C CG+C++ CP +AI + Sbjct: 174 NHPYKEMVGGISADFIEVSEACTQCGICEDLCPTNAIDYEND 215 >gi|197116467|ref|YP_002136894.1| iron-sulfur cluster-binding domain-containing hydrogenase subunit [Geobacter bemidjiensis Bem] gi|197085827|gb|ACH37098.1| hydrogenase subunit, iron-sulfur cluster-binding domain-containing protein [Geobacter bemidjiensis Bem] Length = 332 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 39/113 (34%), Gaps = 27/113 (23%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC---------- 86 P ++ + RG + + C+ C++C +C A AI + Sbjct: 158 PADEPAQQFPIRGRMSF-----DPKACVDCRMCRHVCAAGAIHFDIKGDKGDRHLRSQSP 212 Query: 87 ------------HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 G+ VR + C++CGLC CP A+ ++ A Sbjct: 213 SGNKEDRHLRSLSPGSPEGVRLTLWHNSCVFCGLCSHYCPTGALSVTGDWHLA 265 >gi|20093521|ref|NP_613368.1| pyruvate:ferredoxin oxidoreductase, delta subunit [Methanopyrus kandleri AV19] gi|19886359|gb|AAM01298.1| Pyruvate:ferredoxin oxidoreductase, delta subunit [Methanopyrus kandleri AV19] Length = 89 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 26/82 (31%), Positives = 33/82 (40%), Gaps = 11/82 (13%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E GST G + R +E+C+ C LC CP I Y I Sbjct: 14 EPGSTKRNKTGRWRVFRPVLDQEKCMNCGLCFMYCPDGCIRPSDDG-----------YVI 62 Query: 99 DMIKCIYCGLCQEACPVDAIVE 120 D C CG+C+ CPV+AI Sbjct: 63 DYDYCKGCGICESVCPVNAIEM 84 >gi|330014991|ref|ZP_08308024.1| pyruvate synthase [Klebsiella sp. MS 92-3] gi|328532424|gb|EGF59224.1| pyruvate synthase [Klebsiella sp. MS 92-3] Length = 1175 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 23/142 (16%), Positives = 31/142 (21%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A E C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEALCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + + + C C LC E CP Sbjct: 700 PHSAIRAKVVAPEEMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMYRLEHVEEEK 781 >gi|325970945|ref|YP_004247136.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Spirochaeta sp. Buddy] gi|324026183|gb|ADY12942.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Spirochaeta sp. Buddy] Length = 175 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 27/57 (47%), Gaps = 8/57 (14%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 I C CE CP AIT+ G+ T ID+ KC CGLC ACP AI Sbjct: 48 IPCNPCETACPVHAITV--------GSEITNLPVIDIEKCTGCGLCVAACPGLAIYL 96 >gi|294792883|ref|ZP_06758030.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Veillonella sp. 6_1_27] gi|294456782|gb|EFG25145.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Veillonella sp. 6_1_27] Length = 1178 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 29/90 (32%), Gaps = 17/90 (18%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQ------------AITIESGPRCHDGTRRTVRYDI 98 AL E CI C C +CP A E + +++ I Sbjct: 682 PALFVPKWLPENCIQCNQCSFVCPHATIRPILATEAEVAAAPEHFDTIPALGAKDLQFRI 741 Query: 99 --DMIKCIYCGLCQEACPVD---AIVEGPN 123 + C+ CG C + CP AIV Sbjct: 742 AVSPLDCLGCGNCVDICPAPKGKAIVMTSI 771 >gi|294794642|ref|ZP_06759778.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Veillonella sp. 3_1_44] gi|294454972|gb|EFG23345.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Veillonella sp. 3_1_44] Length = 1178 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 29/90 (32%), Gaps = 17/90 (18%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQ------------AITIESGPRCHDGTRRTVRYDI 98 AL E CI C C +CP A E + +++ I Sbjct: 682 PALFVPKWLPENCIQCNQCSFVCPHATIRPILATEAEVAAAPEHFDTIPALGAKDLQFRI 741 Query: 99 --DMIKCIYCGLCQEACPVD---AIVEGPN 123 + C+ CG C + CP AIV Sbjct: 742 AVSPLDCLGCGNCVDICPAPKGKAIVMTSI 771 >gi|294495823|ref|YP_003542316.1| acetyl-CoA decarbonylase/synthase subunit alpha [Methanohalophilus mahii DSM 5219] gi|292666822|gb|ADE36671.1| acetyl-CoA decarbonylase/synthase alpha subunit [Methanohalophilus mahii DSM 5219] Length = 801 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 5/75 (6%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 RC+ C CE CP ++ +G R ++I KC+ CG C++ACP D I Sbjct: 410 SRCVHCLACELECPTNLPISDAMNAAEEGDLRP--FEILHDKCVACGRCEQACPKD-IPV 466 Query: 121 GPNFEFATET--RQE 133 E A++ R+E Sbjct: 467 LNVIEKASQRVIREE 481 >gi|317133524|ref|YP_004092838.1| hydrogenase, Fe-only [Ethanoligenens harbinense YUAN-3] gi|315471503|gb|ADU28107.1| hydrogenase, Fe-only [Ethanoligenens harbinense YUAN-3] Length = 562 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 34/105 (32%), Gaps = 10/105 (9%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC-PAQAITI 80 L LR+ + + + E LR ++CI C C +C Q + Sbjct: 112 LALRFGVRK---VRFRQEVRDLPLDTSSPAILR----DPQKCILCGDCVRMCAEVQGVGA 164 Query: 81 ESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPVDAIVEGPN 123 + T + + C+ CG C CP AI + Sbjct: 165 LAFAYRGSDMEVTTAFHRSLGDVGCVGCGQCAGVCPTGAITVRDD 209 >gi|284162671|ref|YP_003401294.1| Coenzyme F420 hydrogenase [Archaeoglobus profundus DSM 5631] gi|284012668|gb|ADB58621.1| Coenzyme F420 hydrogenase [Archaeoglobus profundus DSM 5631] Length = 405 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 32/87 (36%), Gaps = 7/87 (8%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + + C+ C++C CP+ A++ + ++ C CG C + C Sbjct: 1 MAHHVNSDNCVGCRMCVDACPSGALS-------SKFNGSILTIILNSELCTGCGSCVDIC 53 Query: 114 PVDAIVEGPNFEFATETRQELYYDKER 140 P +A+ P E + E+ Sbjct: 54 PFNALELVPREEVKEFKIEIDILRPEK 80 >gi|282849962|ref|ZP_06259345.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Veillonella parvula ATCC 17745] gi|282580399|gb|EFB85799.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Veillonella parvula ATCC 17745] Length = 1178 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 29/90 (32%), Gaps = 17/90 (18%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQ------------AITIESGPRCHDGTRRTVRYDI 98 AL E CI C C +CP A E + +++ I Sbjct: 682 PALFVPKWLPENCIQCNQCSFVCPHATIRPILATEAEVAAAPEHFDTIPALGAKDLQFRI 741 Query: 99 --DMIKCIYCGLCQEACPVD---AIVEGPN 123 + C+ CG C + CP AIV Sbjct: 742 AVSPLDCLGCGNCVDICPAPKGKAIVMTSI 771 >gi|294879468|ref|XP_002768697.1| pyruvate:ferredoxin oxidoreductase, putative [Perkinsus marinus ATCC 50983] gi|239871437|gb|EER01415.1| pyruvate:ferredoxin oxidoreductase, putative [Perkinsus marinus ATCC 50983] Length = 892 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 38/120 (31%), Gaps = 30/120 (25%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAI---------------TIESGPRCHDGTRRTVR 95 AL ++C C +C CP I T +S + Sbjct: 739 VALMIPIVDMDKCTQCNICSMSCPHACIRPFLLSQAEDDAKPSTFDSRKAKGGAEVAGLH 798 Query: 96 YDID--MIKCIYCGLCQEACPVDAIVE----------GPNFEFATE--TRQELYYDKERL 141 Y I + C C C ACP DA+ PN+E+A R +DK L Sbjct: 799 YRIQVSPLDCTGCETCVNACPYDALRMEHLADFEDIEKPNWEYAVSLPDRSSR-FDKTTL 857 >gi|239628144|ref|ZP_04671175.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239518290|gb|EEQ58156.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 693 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 26/75 (34%), Gaps = 12/75 (16%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 +C C C C +AI + R I +CI CG C + CP A Sbjct: 9 TKCKHCYKCVRYCDVKAI-----------QVKDERAVIMPDRCILCGHCLKICPQSAKTL 57 Query: 121 GPNFEFA-TETRQEL 134 + + R+ + Sbjct: 58 RSDLDMVKGFLREGM 72 >gi|238018724|ref|ZP_04599150.1| hypothetical protein VEIDISOL_00568 [Veillonella dispar ATCC 17748] gi|237865195|gb|EEP66485.1| hypothetical protein VEIDISOL_00568 [Veillonella dispar ATCC 17748] Length = 1178 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 29/90 (32%), Gaps = 17/90 (18%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQ------------AITIESGPRCHDGTRRTVRYDI 98 AL E CI C C +CP A E + +++ I Sbjct: 682 PALFVPKWLPENCIQCNQCSFVCPHATIRPILATEAEVAAAPEHFDTIPALGAKDLQFRI 741 Query: 99 --DMIKCIYCGLCQEACPVD---AIVEGPN 123 + C+ CG C + CP AIV Sbjct: 742 AVSPLDCLGCGNCVDICPAPKGKAIVMTSI 771 >gi|269798448|ref|YP_003312348.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Veillonella parvula DSM 2008] gi|269095077|gb|ACZ25068.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Veillonella parvula DSM 2008] Length = 1178 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 29/90 (32%), Gaps = 17/90 (18%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQ------------AITIESGPRCHDGTRRTVRYDI 98 AL E CI C C +CP A E + +++ I Sbjct: 682 PALFVPKWLPENCIQCNQCSFVCPHATIRPILATEAEVAAAPEHFDTIPALGAKDLQFRI 741 Query: 99 --DMIKCIYCGLCQEACPVD---AIVEGPN 123 + C+ CG C + CP AIV Sbjct: 742 AVSPLDCLGCGNCVDICPAPKGKAIVMTSI 771 >gi|194337337|ref|YP_002019131.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pelodictyon phaeoclathratiforme BU-1] gi|194309814|gb|ACF44514.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pelodictyon phaeoclathratiforme BU-1] Length = 578 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 6/59 (10%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C CK C + CP +A+T + KC+ C +C CP I G Sbjct: 521 CFDCKQCLSFCPQEAVTRFRD------NPVGEVVYTNYSKCVGCHICALVCPSGYIQMG 573 >gi|195130537|ref|XP_002009708.1| GI15089 [Drosophila mojavensis] gi|193908158|gb|EDW07025.1| GI15089 [Drosophila mojavensis] Length = 1035 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 23/83 (27%), Gaps = 10/83 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP-VDA 117 ++ CI C C C + C C LC CP +D Sbjct: 951 NDDMCINCGKCYMTCA-------DSGYQAIEFDKDTHLPHVNDDCTGCTLCVSVCPIIDC 1003 Query: 118 IVEGPNFEFATETRQELYYDKER 140 I P R DK++ Sbjct: 1004 ISMVPKKIPHVIKRG--IEDKDK 1024 >gi|126656037|ref|ZP_01727421.1| NAD-reducing hydrogenase subunit U [Cyanothece sp. CCY0110] gi|126622317|gb|EAZ93023.1| NAD-reducing hydrogenase subunit U [Cyanothece sp. CCY0110] Length = 238 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 4/69 (5%) Query: 55 RYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLCQ 110 ++ RCI C C +C A + R + + C CG C Sbjct: 140 QFGMDHNRCILCTRCVRVCDEIEGAHVWDVASRGGQSFIVSGINQPWGNVDACTSCGKCV 199 Query: 111 EACPVDAIV 119 +ACP AI Sbjct: 200 DACPTGAIF 208 >gi|326623243|gb|EGE29588.1| putative pyruvate-flavodoxin oxidoreductase [Salmonella enterica subsp. enterica serovar Dublin str. 3246] Length = 1174 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 699 Query: 74 PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 P A +++ R G + + C C LC E CP Sbjct: 700 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757 Query: 116 --------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 758 KDRQNPQIKAINMMSRLEHVEEEK 781 >gi|323259117|gb|EGA42763.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] Length = 1006 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 478 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 531 Query: 74 PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 P A +++ R G + + C C LC E CP Sbjct: 532 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 589 Query: 116 --------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 590 KDRQNPQIKAINMMSRLEHVEEEK 613 >gi|323204140|gb|EFZ89153.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] Length = 1039 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 511 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 564 Query: 74 PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 P A +++ R G + + C C LC E CP Sbjct: 565 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 622 Query: 116 --------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 623 KDRQNPQIKAINMMSRLEHVEEEK 646 >gi|322614901|gb|EFY11826.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619341|gb|EFY16221.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322623153|gb|EFY19995.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322628443|gb|EFY25231.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634850|gb|EFY31581.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322638585|gb|EFY35280.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322641026|gb|EFY37673.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322645391|gb|EFY41919.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322651724|gb|EFY48096.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322654376|gb|EFY50698.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661216|gb|EFY57442.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322662655|gb|EFY58862.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322667734|gb|EFY63894.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322671854|gb|EFY67975.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322677101|gb|EFY73165.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322680237|gb|EFY76276.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685334|gb|EFY81330.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194303|gb|EFZ79499.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199393|gb|EFZ84487.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323205853|gb|EFZ90816.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323213895|gb|EFZ98666.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217181|gb|EGA01902.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220071|gb|EGA04539.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323227259|gb|EGA11429.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232042|gb|EGA16149.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323234569|gb|EGA18656.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323238022|gb|EGA22081.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323243377|gb|EGA27396.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323246183|gb|EGA30168.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253685|gb|EGA37512.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323260415|gb|EGA44028.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266498|gb|EGA49985.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323271222|gb|EGA54649.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 1174 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 699 Query: 74 PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 P A +++ R G + + C C LC E CP Sbjct: 700 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757 Query: 116 --------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 758 KDRQNPQIKAINMMSRLEHVEEEK 781 >gi|321224274|gb|EFX49337.1| Pyruvate-flavodoxin oxidoreductase [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] Length = 1180 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 699 Query: 74 PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 P A +++ R G + + C C LC E CP Sbjct: 700 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757 Query: 116 --------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 758 KDRQDPQIKAINMMSRLEHVEEEK 781 >gi|303245454|ref|ZP_07331738.1| nitroreductase [Desulfovibrio fructosovorans JJ] gi|302493303|gb|EFL53165.1| nitroreductase [Desulfovibrio fructosovorans JJ] Length = 273 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/76 (28%), Positives = 27/76 (35%), Gaps = 8/76 (10%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E C C LC A CPA + + CI CG C +CP A Sbjct: 8 EECSGCGLCVAACPASLVRQSEEGQPPHALAGR------EEHCIRCGHCVISCPTGAFHH 61 Query: 121 G--PNFEFATETRQEL 134 P F+ R+EL Sbjct: 62 ALLPEERFSPLKRREL 77 >gi|304312861|ref|YP_003812459.1| hypothetical protein HDN1F_32410 [gamma proteobacterium HdN1] gi|301798594|emb|CBL46824.1| Hypothetical protein HDN1F_32410 [gamma proteobacterium HdN1] Length = 296 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 10/66 (15%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C CP AI + + + + +C C LC E CPVD I Sbjct: 91 DECIGCTKCIQACPVDAILGAA----------QLMHTVIGDQCTGCNLCVEPCPVDCIDM 140 Query: 121 GPNFEF 126 E Sbjct: 141 VAMPEL 146 Score = 37.0 bits (84), Expect = 0.80, Method: Composition-based stats. Identities = 12/21 (57%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 I +CI C C +ACPVDAI Sbjct: 88 IREDECIGCTKCIQACPVDAI 108 >gi|295706514|ref|YP_003599589.1| dihydroorotate dehydrogenase [Bacillus megaterium DSM 319] gi|294804173|gb|ADF41239.1| dihydroorotate dehydrogenase [Bacillus megaterium DSM 319] Length = 426 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 20/63 (31%), Gaps = 4/63 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117 + CI C C C + + G C+ C LC CPVD A Sbjct: 338 DPDTCINCNKCHISCEDTSHQCIDMLKDPSGKSYLKV---REEDCVGCNLCSIVCPVDGA 394 Query: 118 IVE 120 I Sbjct: 395 ISM 397 >gi|294788766|ref|ZP_06754007.1| electron transport complex, RnfABCDGE type, B subunit [Simonsiella muelleri ATCC 29453] gi|294483248|gb|EFG30934.1| electron transport complex, RnfABCDGE type, B subunit [Simonsiella muelleri ATCC 29453] Length = 287 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 23/66 (34%), Gaps = 10/66 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C C CP AI S + + +C CGLC CPVD Sbjct: 83 YIDESVCIGCTACIRACPVDAIMGASK----------FMHTVLTDECTGCGLCVAPCPVD 132 Query: 117 AIVEGP 122 I Sbjct: 133 CIDLID 138 >gi|291549367|emb|CBL25629.1| hydrogenases, Fe-only [Ruminococcus torques L2-14] Length = 564 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 25/83 (30%), Gaps = 13/83 (15%) Query: 59 GEERCIACKLCEAICP--------AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 +CI C C +C A ++ I C+ CG C+ Sbjct: 141 DPNKCILCGDCVRMCDNVQNINAIDFAYRGTDAQVIPAFNKK-----IAETDCVGCGQCR 195 Query: 111 EACPVDAIVEGPNFEFATETRQE 133 CP AI N + E + Sbjct: 196 VVCPTGAISIHTNIDEVWEALAD 218 >gi|260655145|ref|ZP_05860633.1| periplasmic [Fe] hydrogenase, large subunit [Jonquetella anthropi E3_33 E1] gi|260630067|gb|EEX48261.1| periplasmic [Fe] hydrogenase, large subunit [Jonquetella anthropi E3_33 E1] Length = 577 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 6/91 (6%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT---RR 92 PF+K + L R + +CI C C +C + GT Sbjct: 121 TPFKKHIDDRTSNPDFPLIRDYS---KCIKCMRCVQVCDKIQHSNVWDVVNSGGTITVDV 177 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 Y ++ C+ CG C CPV A+ E + Sbjct: 178 GKAYRLEDAPCVLCGQCITHCPVGALHERDD 208 >gi|238911964|ref|ZP_04655801.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 1204 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 699 Query: 74 PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 P A +++ R G + + C C LC E CP Sbjct: 700 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757 Query: 116 --------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 758 KDRQNPQIKAINMMSRLEHVEEEK 781 >gi|226948233|ref|YP_002803324.1| anaerobic sulfite reductase, subunit C [Clostridium botulinum A2 str. Kyoto] gi|226842865|gb|ACO85531.1| anaerobic sulfite reductase, subunit C [Clostridium botulinum A2 str. Kyoto] Length = 321 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 22/88 (25%), Gaps = 8/88 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + G + + RCI C C C + Sbjct: 145 CPNDCIKARMHDFGILGMTEPQYDKYRCIGCMACINNC--------KKRVTGALRFENFK 196 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPN 123 D KCI CG C CP A Sbjct: 197 VIRDHEKCIGCGECVGKCPTGAWTRSKE 224 >gi|224583858|ref|YP_002637656.1| pyruvate-flavodoxin oxidoreductase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224468385|gb|ACN46215.1| putative pyruvate-flavodoxin oxidoreductase [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 1174 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 699 Query: 74 PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 P A +++ R G + + C C LC E CP Sbjct: 700 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757 Query: 116 --------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 758 KDRQNPQIKAINMMSRLEHVEEEK 781 >gi|223984272|ref|ZP_03634417.1| hypothetical protein HOLDEFILI_01711 [Holdemania filiformis DSM 12042] gi|223963757|gb|EEF68124.1| hypothetical protein HOLDEFILI_01711 [Holdemania filiformis DSM 12042] Length = 1168 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 30/103 (29%), Gaps = 20/103 (19%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHD 88 S + + A++ CI C C +CP A + Sbjct: 669 VSFKEKRTIAVQVPTWDPNNCIQCGFCSFVCPHATIRPFLLTDEEIANAPMEFKTIQAMG 728 Query: 89 GTRRTVRYDID--MIKCIYCGLCQEACPV----DAIVEGPNFE 125 ++Y I C+ CGLC CP A+ E Sbjct: 729 KGVENLKYRIQVSPANCVGCGLCVVECPGKGGNKALKMVDINE 771 >gi|224370960|ref|YP_002605124.1| HyfI [Desulfobacterium autotrophicum HRM2] gi|223693677|gb|ACN16960.1| HyfI [Desulfobacterium autotrophicum HRM2] Length = 258 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/121 (20%), Positives = 40/121 (33%), Gaps = 11/121 (9%) Query: 20 FFLCLRYFFKAKT-TINYPFEK-GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA 77 F +R F+ K T+++P R+ G + C C CP A Sbjct: 1 MFDIIRTRFQQKYRTLSWPRGPAPELPHRYAGRPIMDGDCLEN-----CTACIDACPTGA 55 Query: 78 ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 I++ + +D+ KC++C C+ C I A R L Sbjct: 56 ISLSNNQNPALP----AELSMDLGKCLFCRKCETVCTHGVITFSRQSRMAATQRDALIIK 111 Query: 138 K 138 K Sbjct: 112 K 112 >gi|213584020|ref|ZP_03365846.1| pyruvate-flavodoxin oxidoreductase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 654 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 314 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 367 Query: 74 PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 P A +++ R G + + C C LC E CP Sbjct: 368 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 425 Query: 116 --------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 426 KDRQNPQIKAINMMSRLEHVEEEK 449 >gi|200389668|ref|ZP_03216279.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199602113|gb|EDZ00659.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 1174 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 699 Query: 74 PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 P A +++ R G + + C C LC E CP Sbjct: 700 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757 Query: 116 --------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 758 KDRQNPQIKAINMMSRLEHVEEEK 781 >gi|189485526|ref|YP_001956467.1| NAD-dependent Fe-hydrogenase 51kDa NADH dehydrogenase component [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287485|dbj|BAG14006.1| NAD-dependent Fe-hydrogenase 51kDa NADH dehydrogenase component [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 623 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 45/96 (46%), Gaps = 16/96 (16%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 L+Y F+ + + ++ +L Y ++CI C +C CPA+AI+ E Sbjct: 541 TLKY-FRNEYDAHVKEKRCPAGEC----KSLINYEI-TDKCIGCTVCAVKCPAKAISGE- 593 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 R ++ I ++KC+ C +C ++C +AI Sbjct: 594 ---------RRQKHKIAIVKCVKCDICIKSCKFNAI 620 >gi|188587026|ref|YP_001918571.1| Cobyrinic acid ac-diamide synthase [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351713|gb|ACB85983.1| Cobyrinic acid ac-diamide synthase [Natranaerobius thermophilus JW/NM-WN-LF] Length = 652 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 5/64 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C C +C AIT + +Y ID + C CG C+ C DAI Sbjct: 418 DSNECSGCGKCYQVCRFAAITFQEREGEDK-----QKYQIDPLNCEGCGACRLVCQSDAI 472 Query: 119 VEGP 122 P Sbjct: 473 KLEP 476 Score = 42.4 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 11/64 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E+C C C IC A+ + + C CG C ACP AI Sbjct: 75 DQEKCTGCGECSQICVFNALVSINQEIL-----------LFPELCHACGACNLACPNSAI 123 Query: 119 VEGP 122 EG Sbjct: 124 QEGN 127 >gi|168819450|ref|ZP_02831450.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205343855|gb|EDZ30619.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320085856|emb|CBY95631.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 1174 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 699 Query: 74 PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 P A +++ R G + + C C LC E CP Sbjct: 700 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757 Query: 116 --------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 758 KDRQNPQIKAINMMSRLEHVEEEK 781 >gi|168260149|ref|ZP_02682122.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205350565|gb|EDZ37196.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 1174 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 699 Query: 74 PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 P A +++ R G + + C C LC E CP Sbjct: 700 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757 Query: 116 --------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 758 KDRQDPQIKAINMMSRLEHVEEEK 781 >gi|194445273|ref|YP_002040899.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194403936|gb|ACF64158.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 1174 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 699 Query: 74 PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 P A +++ R G + + C C LC E CP Sbjct: 700 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757 Query: 116 --------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 758 KDRQNPQIKAINMMSRLEHVEEEK 781 >gi|168241208|ref|ZP_02666140.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194451230|ref|YP_002045691.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|194409534|gb|ACF69753.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|205339538|gb|EDZ26302.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] Length = 1174 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 699 Query: 74 PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 P A +++ R G + + C C LC E CP Sbjct: 700 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757 Query: 116 --------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 758 KDRQNPQIKAINMMSRLEHVEEEK 781 >gi|204927513|ref|ZP_03218714.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204322855|gb|EDZ08051.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 1174 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 699 Query: 74 PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 P A +++ R G + + C C LC E CP Sbjct: 700 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757 Query: 116 --------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 758 KDRQNPQIKAINMMSRLEHVEEEK 781 >gi|197250474|ref|YP_002146381.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197214177|gb|ACH51574.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 1174 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 699 Query: 74 PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 P A +++ R G + + C C LC E CP Sbjct: 700 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757 Query: 116 --------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 758 KDRQNPQIKAINMMSRLEHVEEEK 781 >gi|168182811|ref|ZP_02617475.1| anaerobic sulfite reductase, subunit C [Clostridium botulinum Bf] gi|237794256|ref|YP_002861808.1| anaerobic sulfite reductase subunit C [Clostridium botulinum Ba4 str. 657] gi|182673968|gb|EDT85929.1| anaerobic sulfite reductase, subunit C [Clostridium botulinum Bf] gi|229263477|gb|ACQ54510.1| anaerobic sulfite reductase, subunit C [Clostridium botulinum Ba4 str. 657] Length = 321 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 25/88 (28%), Gaps = 8/88 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + G + + RC+ C+ C C +A + Sbjct: 145 CPNDCIKARMHDFGILGMTEPQYDKYRCVGCQACVNNCKKRA--------AGALRFENFK 196 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPN 123 D KCI CG C CP A Sbjct: 197 VIRDYEKCIGCGECVGKCPTGAWTRSKE 224 >gi|168235775|ref|ZP_02660833.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194735236|ref|YP_002114676.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194710738|gb|ACF89959.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197290972|gb|EDY30325.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 1174 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 699 Query: 74 PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 P A +++ R G + + C C LC E CP Sbjct: 700 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757 Query: 116 --------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 758 KDRQNPQIKAINMMSRLEHVEEEK 781 >gi|168230073|ref|ZP_02655131.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194469550|ref|ZP_03075534.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194455914|gb|EDX44753.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205335351|gb|EDZ22115.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 1174 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 699 Query: 74 PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 P A +++ R G + + C C LC E CP Sbjct: 700 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757 Query: 116 --------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 758 KDRQNPQIKAINMMSRLEHVEEEK 781 >gi|168462895|ref|ZP_02696826.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|198245539|ref|YP_002215497.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|207856852|ref|YP_002243503.1| pyruvate-flavodoxin oxidoreductase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|195633910|gb|EDX52262.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197940055|gb|ACH77388.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|206708655|emb|CAR32980.1| probable pyruvate-flavodoxin oxidoreductase [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] Length = 1174 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 699 Query: 74 PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 P A +++ R G + + C C LC E CP Sbjct: 700 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757 Query: 116 --------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 758 KDRQNPQIKAINMMSRLEHVEEEK 781 >gi|167549865|ref|ZP_02343623.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205325013|gb|EDZ12852.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] Length = 1174 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 699 Query: 74 PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 P A +++ R G + + C C LC E CP Sbjct: 700 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757 Query: 116 --------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 758 KDRQNPQIKAINMMSRLEHVEEEK 781 >gi|161613883|ref|YP_001587848.1| hypothetical protein SPAB_01620 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161363247|gb|ABX67015.1| hypothetical protein SPAB_01620 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 1174 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 699 Query: 74 PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 P A +++ R G + + C C LC E CP Sbjct: 700 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757 Query: 116 --------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 758 KDRQNPQIKAINMMSRLEHVEEEK 781 >gi|150391798|ref|YP_001321847.1| hydrogenase, Fe-only [Alkaliphilus metalliredigens QYMF] gi|149951660|gb|ABR50188.1| hydrogenase, Fe-only [Alkaliphilus metalliredigens QYMF] Length = 551 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 3/78 (3%) Query: 59 GEERCIACKLCEAIC-PAQAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQEACPV 115 +CI C C +C Q +I T+ + ++ ++ CIYCG C +CPV Sbjct: 144 DSSKCILCGRCVNVCKNVQKTSILEFTNRGFETQISPAFNKSMNETPCIYCGQCIVSCPV 203 Query: 116 DAIVEGPNFEFATETRQE 133 A+ E + E + ++ Sbjct: 204 AALREKEDIERVWDAIED 221 >gi|149378172|ref|ZP_01895889.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Marinobacter algicola DG893] gi|149357534|gb|EDM46039.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Marinobacter algicola DG893] Length = 612 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 12/105 (11%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 P E+ CI C +C CP + + + G +++ CI CG C CP Sbjct: 361 PDPAPEQPCIRCSMCAEACPMELLPQQLFWYSKSGE-LDKVEHLNLFDCIECGACSYVCP 419 Query: 115 VDAIVEGPNF-----EFATETRQELYYDKERLLNNGDRWESEIVR 154 +I + E + ++L D+ R +R+E+ R Sbjct: 420 -SSIPLVQYYRAAKGEIRVQQAEQLKADRAR-----ERFEARQAR 458 >gi|134045391|ref|YP_001096877.1| formylmethanofuran dehydrogenase subunit F [Methanococcus maripaludis C5] gi|132663016|gb|ABO34662.1| formylmethanofuran dehydrogenase, subunit F [Methanococcus maripaludis C5] Length = 352 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 33/71 (46%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R L ++ C+ C +C CPA+AI + ID+ C+YC Sbjct: 139 RKSLVLGEITIKKDDCVLCGICAEYCPAEAIELIPNDMNALSLNPIADIKIDLDACVYCK 198 Query: 108 LCQEACPVDAI 118 +C++ACP +AI Sbjct: 199 VCEKACPHNAI 209 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 8/95 (8%) Query: 36 YPFEKGSTSPRFRGEHALRRYPN-------GEERCIACKLCEAICPAQAITIESGPRCHD 88 PF+ S + + +YP + +C+ C+ CE +CP Q Sbjct: 81 CPFDAVKLSINDKPITEMPQYPKIKRGIELNQSKCVLCEQCELVCP-QCAIDVEREVPER 139 Query: 89 GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + I C+ CG+C E CP +AI PN Sbjct: 140 KSLVLGEITIKKDDCVLCGICAEYCPAEAIELIPN 174 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 35/96 (36%), Gaps = 5/96 (5%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 E R R + C+ C +C ICP AI + G + D Sbjct: 7 DENDGVIEISRSGVEKRVLKWDDCTCVGCGICSEICPTSAIEMGPLGAIFKGELDAPKLD 66 Query: 98 IDMIKCIYCGLCQEACPVDA----IVEGPNFEFATE 129 I KC+ CG+C ACP DA I + P E Sbjct: 67 IS-EKCVLCGMCACACPFDAVKLSINDKPITEMPQY 101 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 34/101 (33%), Gaps = 11/101 (10%) Query: 36 YPFEKGSTSPRFRGEHALRRYPN---GEERCIACKLCEAICPAQAITIESGPRC------ 86 P E P +L + + C+ CK+CE CP AI Sbjct: 164 CPAEAIELIPNDMNALSLNPIADIKIDLDACVYCKVCEKACPHNAIEAICYKCPLASKIK 223 Query: 87 --HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 + +ID C+ CG C CP DAI FE Sbjct: 224 EPELYKEIKGQTNIDKDLCVSCGWCANICPADAIEVEKPFE 264 Score = 41.6 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 8/83 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + F GE + E C AC C ++CP A+ P+ + Sbjct: 252 CPADAIEVEKPFEGELII-----DEPACNACGACISVCPCNALVF---PKPEKQGDKVPN 303 Query: 96 YDIDMIKCIYCGLCQEACPVDAI 118 ++ CI CG C +CPVDA+ Sbjct: 304 VMVNQDVCILCGACTHSCPVDAL 326 Score = 38.9 bits (89), Expect = 0.21, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 8/64 (12%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 ++ C++C C ICPA AI +E ID C CG C CP + Sbjct: 236 NIDKDLCVSCGWCANICPADAIEVEKPFEGEL--------IIDEPACNACGACISVCPCN 287 Query: 117 AIVE 120 A+V Sbjct: 288 ALVF 291 Score = 38.9 bits (89), Expect = 0.23, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 4/65 (6%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY----DIDMIKCIYCGLCQEAC 113 + E+C+ C +C CP A+ + + + + +++ KC+ C C+ C Sbjct: 66 DISEKCVLCGMCACACPFDAVKLSINDKPITEMPQYPKIKRGIELNQSKCVLCEQCELVC 125 Query: 114 PVDAI 118 P AI Sbjct: 126 PQCAI 130 >gi|146305429|ref|YP_001185894.1| formate dehydrogenase, alpha subunit [Pseudomonas mendocina ymp] gi|145573630|gb|ABP83162.1| formate dehydrogenase alpha subunit [Pseudomonas mendocina ymp] Length = 944 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 24/81 (29%), Gaps = 3/81 (3%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T G D +C+ CG C Sbjct: 157 YFSYDPSKCIVCNRCVRACEEVQGTFALTIDGRGFDSRVAAGQAEDFLDSECVSCGACVN 216 Query: 112 ACPVDAIVEGPNFEFATETRQ 132 ACP ++E E R Sbjct: 217 ACPTATLMEKSVIELGQAERS 237 >gi|147918954|ref|YP_685326.1| tungsten formylmethanofuran dehydrogenase, subunit F [uncultured methanogenic archaeon RC-I] gi|147920867|ref|YP_687320.1| tungsten formylmethanofuran dehydrogenase, subunit F [uncultured methanogenic archaeon RC-I] gi|110620722|emb|CAJ36000.1| tungsten formylmethanofuran dehydrogenase, subunit F [uncultured methanogenic archaeon RC-I] gi|110622716|emb|CAJ37994.1| tungsten formylmethanofuran dehydrogenase, subunit F [uncultured methanogenic archaeon RC-I] Length = 363 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 30/63 (47%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +RC C +C CP +AIT G + + D+D KC +CG+C CP +AI Sbjct: 30 DLDRCTGCGVCIDACPEEAITEGPIGAVSRGKAKVSKVDVDPKKCSFCGVCNILCPFNAI 89 Query: 119 VEG 121 Sbjct: 90 KLS 92 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 2/65 (3%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 Y + +C C +C C A IE +R D KC C +C E C Sbjct: 157 IDYKLDDAKCTKCGICAEAC--DAFKIEYKEPTPLTVKRIGEVKFDEKKCDACKVCVEIC 214 Query: 114 PVDAI 118 P DAI Sbjct: 215 PEDAI 219 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 25/93 (26%), Positives = 36/93 (38%), Gaps = 10/93 (10%) Query: 36 YPFE---KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 P E +G RG+ + + ++C C +C +CP AI + Sbjct: 44 CPEEAITEGPIGAVSRGKAKVSKVDVDPKKCSFCGVCNILCPFNAIKLSVDGVEKLPILE 103 Query: 93 TVRY-------DIDMIKCIYCGLCQEACPVDAI 118 + ID KC C LC+E CP DAI Sbjct: 104 QQGFPVLEKKAKIDDEKCSRCVLCEEVCPRDAI 136 Score = 42.0 bits (97), Expect = 0.030, Method: Composition-based stats. Identities = 25/107 (23%), Positives = 43/107 (40%), Gaps = 5/107 (4%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP-----RCHDGTRRT 93 EK + ++ +E+C C LCE +CP AI + + + Sbjct: 97 EKLPILEQQGFPVLEKKAKIDDEKCSRCVLCEEVCPRDAIRRDVAKVDQGHKAASTMKYA 156 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140 + Y +D KC CG+C EAC I + E+ +D+++ Sbjct: 157 IDYKLDDAKCTKCGICAEACDAFKIEYKEPTPLTVKRIGEVKFDEKK 203 Score = 37.0 bits (84), Expect = 0.86, Method: Composition-based stats. Identities = 13/26 (50%), Positives = 19/26 (73%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPN 123 +D+ +C CG+C +ACP +AI EGP Sbjct: 29 VDLDRCTGCGVCIDACPEEAITEGPI 54 Score = 37.0 bits (84), Expect = 0.86, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 7/81 (8%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93 + P + F GE + C C +CP A+ + P + + Sbjct: 250 VICPKDAAKVEKVFEGELTINTANCPAG----CSTCVDVCPCNALYL---PVVEEAGHKP 302 Query: 94 VRYDIDMIKCIYCGLCQEACP 114 + + CIYCG C ACP Sbjct: 303 GKLAYNKDFCIYCGACINACP 323 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 2/67 (2%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E++C ACK+C ICP AI+IE + + + ID +C+ C CQ CP DA Sbjct: 200 DEKKCDACKVCVEICPEDAISIERKIIEEP--KLSGKVAIDTNECVTCTWCQVICPKDAA 257 Query: 119 VEGPNFE 125 FE Sbjct: 258 KVEKVFE 264 >gi|90408374|ref|ZP_01216537.1| electron transport complex protein RnfC [Psychromonas sp. CNPT3] gi|90310537|gb|EAS38659.1| electron transport complex protein RnfC [Psychromonas sp. CNPT3] Length = 839 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 10/104 (9%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 E+ CI C C CP + + + + + + ++ CI CG+C CP Sbjct: 380 EQEQACIRCSYCADACPVELMPQQLLWYAKNQDHKKLE-AYNLSSCIECGICAFVCP-ST 437 Query: 118 IVEGPNFEFATETRQELYYDKERLLNNGD----RWESEIVRNIV 157 I + A + ++ D R E R I Sbjct: 438 IPLVDYYRIAKAE----IHTAKKESQQADIARQRHEKREARLIQ 477 >gi|4034791|emb|CAA76373.1| hydrogenase [Nyctotherus ovalis] Length = 1206 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 1/65 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++CI C +C C Q + G +D+ +CI CG C CP AI Sbjct: 167 DNDKCINCDICVHTCSLQGLNALGFYNEE-GHAVKSMGTLDVSECIQCGQCINRCPTGAI 225 Query: 119 VEGPN 123 E Sbjct: 226 TEKSE 230 >gi|77919187|ref|YP_357002.1| MinD family ATPase [Pelobacter carbinolicus DSM 2380] gi|77545270|gb|ABA88832.1| MinD superfamily P-loop ATPase [Pelobacter carbinolicus DSM 2380] Length = 291 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 6/60 (10%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E+C C C C A+ + + ID + C CG+C CP AI Sbjct: 66 EKCNGCGACLVHCRFCAVKKSAEQTGKP------IFSIDPVACEGCGVCVYVCPEQAIDF 119 >gi|71907125|ref|YP_284712.1| electron transport complex, RnfABCDGE type, B subunit [Dechloromonas aromatica RCB] gi|71846746|gb|AAZ46242.1| Electron transport complex, RnfABCDGE type, B subunit [Dechloromonas aromatica RCB] Length = 177 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 10/61 (16%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C C +CP AI G + + I C C C + CP +A+ P Sbjct: 110 CIGCCRCMKVCPTDAI---------IGAAKQIHNVIREA-CTGCSSCVDVCPTEALGMMP 159 Query: 123 N 123 Sbjct: 160 I 160 Score = 35.1 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 9/22 (40%), Positives = 12/22 (54%) Query: 97 DIDMIKCIYCGLCQEACPVDAI 118 ++ CI C C + CP DAI Sbjct: 104 EVTEEICIGCCRCMKVCPTDAI 125 >gi|62180215|ref|YP_216632.1| putative pyruvate-flavodoxin oxidoreductase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62127848|gb|AAX65551.1| putative pyruvate-flavodoxin oxidoreductase [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322714687|gb|EFZ06258.1| putative pyruvate-flavodoxin oxidoreductase [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 1174 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 699 Query: 74 PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 P A +++ R G + + C C LC E CP Sbjct: 700 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757 Query: 116 --------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 758 KDRQNPQIKAINMMSRLEHVEEEK 781 >gi|56413424|ref|YP_150499.1| pyruvate-flavodoxin oxidoreductase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197362347|ref|YP_002141984.1| pyruvate-flavodoxin oxidoreductase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56127681|gb|AAV77187.1| probable pyruvate-flavodoxin oxidoreductase [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093824|emb|CAR59307.1| probable pyruvate-flavodoxin oxidoreductase [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 1174 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 699 Query: 74 PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 P A +++ R G + + C C LC E CP Sbjct: 700 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757 Query: 116 --------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 758 KDRQNPQIKAINMMSRLEHVEEEK 781 >gi|16764995|ref|NP_460610.1| pyruvate-flavodoxin oxidoreductase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167992830|ref|ZP_02573926.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|197262637|ref|ZP_03162711.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|16420178|gb|AAL20569.1| putative pyruvate-flavodoxin oxidoreductase [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|197240892|gb|EDY23512.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|205329036|gb|EDZ15800.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|261246843|emb|CBG24658.1| probable pyruvate-flavodoxin oxidoreductase [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267993581|gb|ACY88466.1| putative pyruvate-flavodoxin oxidoreductase [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301158179|emb|CBW17676.1| probable pyruvate-flavodoxin oxidoreductase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312912639|dbj|BAJ36613.1| putative pyruvate-flavodoxin oxidoreductase [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|323129920|gb|ADX17350.1| putative pyruvate-flavodoxin oxidoreductase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332988538|gb|AEF07521.1| putative pyruvate-flavodoxin oxidoreductase [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 1174 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 699 Query: 74 PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 P A +++ R G + + C C LC E CP Sbjct: 700 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757 Query: 116 --------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 758 KDRQDPQIKAINMMSRLEHVEEEK 781 >gi|16760237|ref|NP_455854.1| pyruvate-flavodoxin oxidoreductase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29141994|ref|NP_805336.1| pyruvate-flavodoxin oxidoreductase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213428539|ref|ZP_03361289.1| pyruvate-flavodoxin oxidoreductase [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] gi|289825696|ref|ZP_06544867.1| pyruvate-flavodoxin oxidoreductase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25284487|pir||AH0663 probable pyruvate-flavodoxin oxidoreductase (EC 1.-.-.-) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16502532|emb|CAD01681.1| probable pyruvate-flavodoxin oxidoreductase [Salmonella enterica subsp. enterica serovar Typhi] gi|29137623|gb|AAO69185.1| probable pyruvate-flavodoxin oxidoreductase [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 1174 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 699 Query: 74 PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 P A +++ R G + + C C LC E CP Sbjct: 700 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757 Query: 116 --------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 758 KDRQNPQIKAINMMSRLEHVEEEK 781 >gi|145218862|ref|YP_001129571.1| putative glutamate synthase (NADPH) small subunit [Prosthecochloris vibrioformis DSM 265] gi|145205026|gb|ABP36069.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Chlorobium phaeovibrioides DSM 265] Length = 578 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 23/59 (38%), Gaps = 6/59 (10%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C CK C + CP +A+ + + D KC+ C LC CP I G Sbjct: 521 CFDCKQCVSFCPQEAVIRYRE------NPQGEVVETDYEKCVGCHLCSLVCPSGYIQMG 573 >gi|307942955|ref|ZP_07658300.1| formate dehydrogenase, alpha subunit [Roseibium sp. TrichSKD4] gi|307773751|gb|EFO32967.1| formate dehydrogenase, alpha subunit [Roseibium sp. TrichSKD4] Length = 924 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 5/77 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114 + CIAC LCE C + + G+ +D + + C+ CG C ACP Sbjct: 144 NLDTCIACNLCERACR-EVQVNDVIGMADRGSHTVPVFDLMDPMGLSSCVACGECVSACP 202 Query: 115 VDAIVEGPNFEFATETR 131 A++E + A + R Sbjct: 203 TGALMEKSLLDEAAKVR 219 >gi|293603975|ref|ZP_06686388.1| NADH:ubiquinone oxidoreductase subunit RnfB [Achromobacter piechaudii ATCC 43553] gi|292817579|gb|EFF76647.1| NADH:ubiquinone oxidoreductase subunit RnfB [Achromobacter piechaudii ATCC 43553] Length = 214 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 24/70 (34%), Gaps = 10/70 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L E CI C LC CP AI + + + C C LC Sbjct: 76 LLVARIDESHCIGCTLCIQACPVDAIVGANK----------HMHTVLADWCTGCDLCVAP 125 Query: 113 CPVDAIVEGP 122 CPVD I P Sbjct: 126 CPVDCIQMVP 135 >gi|294146592|ref|YP_003559258.1| NAD-dependent formate dehydrogenase alpha subunit [Sphingobium japonicum UT26S] gi|292677009|dbj|BAI98526.1| NAD-dependent formate dehydrogenase alpha subunit [Sphingobium japonicum UT26S] Length = 948 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 3/81 (3%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T G + D +C+ CG C + Sbjct: 160 YFDFDPSKCILCSRCVRACDEVQGTFALTIEGRGFDSKVSPSQGQDFLSSECVSCGACVQ 219 Query: 112 ACPVDAIVEGPNFEFATETRQ 132 ACP + E E T R Sbjct: 220 ACPTATLTEKKVVEVGTPDRS 240 >gi|296136307|ref|YP_003643549.1| electron transport complex, RnfABCDGE type, B subunit [Thiomonas intermedia K12] gi|295796429|gb|ADG31219.1| electron transport complex, RnfABCDGE type, B subunit [Thiomonas intermedia K12] Length = 210 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 28/109 (25%), Positives = 32/109 (29%), Gaps = 18/109 (16%) Query: 24 LRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG 83 L + + T P R + CI C LC CP AI S Sbjct: 57 LAHLLQRPATALDPSCGTEGP---RERAVI-----DPALCIGCTLCIQACPVDAIAGVSK 108 Query: 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 R D C C LC CPVD I + A TR Sbjct: 109 -------RMHTVIDDW---CTGCALCLPPCPVDCIRMEAQADPALATRS 147 >gi|227498364|ref|ZP_03928514.1| pyruvate:ferredoxin oxidoreductase [Acidaminococcus sp. D21] gi|226903826|gb|EEH89744.1| pyruvate:ferredoxin oxidoreductase [Acidaminococcus sp. D21] Length = 1178 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 22/84 (26%), Gaps = 18/84 (21%) Query: 57 PNGEERCIACKLCEAICPAQAITI----------------ESGPRCHDGTRRTVRYDIDM 100 CI C C +CP AI R + Sbjct: 695 EWQTANCIQCNQCALVCPHAAIRPILVDAKELAAAPAGFATKKAIGPALAAYEYRMQVSP 754 Query: 101 IKCIYCGLCQEACP--VDAIVEGP 122 + C CG C CP A+V P Sbjct: 755 LDCTGCGSCVNVCPAKEKALVMKP 778 >gi|237808209|ref|YP_002892649.1| electron transport complex, RnfABCDGE type, B subunit [Tolumonas auensis DSM 9187] gi|259494048|sp|C4LEP6|RNFB_TOLAT RecName: Full=Electron transport complex protein rnfB gi|237500470|gb|ACQ93063.1| electron transport complex, RnfABCDGE type, B subunit [Tolumonas auensis DSM 9187] Length = 185 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 25/82 (30%), Gaps = 10/82 (12%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E S R E CI C C CP AI + + I Sbjct: 91 EPPSDDNELLMAPPKRVAFIHENLCIGCTKCIQACPVDAIIGAPK----------LMHTI 140 Query: 99 DMIKCIYCGLCQEACPVDAIVE 120 +C C LC + CP + I Sbjct: 141 LRSECTGCDLCVDPCPTNCIEM 162 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 13/25 (52%), Positives = 15/25 (60%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 I CI C C +ACPVDAI+ P Sbjct: 110 IHENLCIGCTKCIQACPVDAIIGAP 134 >gi|220905362|ref|YP_002480674.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869661|gb|ACL49996.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 653 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 21/64 (32%), Gaps = 7/64 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RC+ C C CP AI R + + C CGLC CP AI Sbjct: 581 DMRRCVNCGKCIQCCPFGAIK-------EVEVRGEGKAQVIETVCQGCGLCTATCPQGAI 633 Query: 119 VEGP 122 Sbjct: 634 QLSH 637 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 28/97 (28%), Gaps = 13/97 (13%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPA----QAITIE----SGPRCHDGTRRTVRYD 97 F + R C C C CP+ A E + + Sbjct: 225 NFTVKIRKRATYVDWSLCTGCGACTEKCPSKKTPDAFNEEISNTTAITIAFPQAIPKKAV 284 Query: 98 IDMIKCI-----YCGLCQEACPVDAIVEGPNFEFATE 129 I+ C CG+C + CP AI E TE Sbjct: 285 INAGHCRQFIKGKCGVCAKICPTGAIKYDMEDEIITE 321 Score = 34.7 bits (78), Expect = 4.1, Method: Composition-based stats. Identities = 11/24 (45%), Positives = 15/24 (62%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVE 120 +DM +C+ CG C + CP AI E Sbjct: 579 QVDMRRCVNCGKCIQCCPFGAIKE 602 >gi|167761074|ref|ZP_02433201.1| hypothetical protein CLOSCI_03472 [Clostridium scindens ATCC 35704] gi|167661308|gb|EDS05438.1| hypothetical protein CLOSCI_03472 [Clostridium scindens ATCC 35704] Length = 606 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 14/97 (14%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 L +F+ + + ++ L R+ E+CI C +C CPA AI+ Sbjct: 509 LTTIQYFREEYEAHIREKRCPAGVC----KELTRFAIQPEKCIGCDMCARGCPASAISGG 564 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + ID KCI CG C+EAC DA+ Sbjct: 565 KKE----------IHAIDPEKCIACGSCREACKFDAV 591 Score = 41.2 bits (95), Expect = 0.043, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 16/44 (36%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 I + R+ I KCI C +C CP AI G Sbjct: 522 HIREKRCPAGVCKELTRFAIQPEKCIGCDMCARGCPASAISGGK 565 >gi|218780366|ref|YP_002431684.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfatibacillum alkenivorans AK-01] gi|218761750|gb|ACL04216.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfatibacillum alkenivorans AK-01] Length = 724 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 18/62 (29%), Gaps = 1/62 (1%) Query: 63 CIACKLCEAICPAQAITIESG-PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C+ C C +C + + KCI CG C CP A+ Sbjct: 585 CLRCGKCVEVCRDRMKVNALELGYFDFDHPVKTDFRKIQEKCILCGACATNCPTGAMQIR 644 Query: 122 PN 123 Sbjct: 645 DE 646 >gi|150402417|ref|YP_001329711.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanococcus maripaludis C7] gi|150033447|gb|ABR65560.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus maripaludis C7] Length = 352 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 32/71 (45%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R L ++ C+ C +C CPA AI + +D+ C+YC Sbjct: 139 RKSLVLGEITIKKDACVLCGICAEYCPADAIELIPNEMNALSLNPIADIKVDLDACVYCK 198 Query: 108 LCQEACPVDAI 118 +C++ACP +AI Sbjct: 199 VCEKACPHNAI 209 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 1/82 (1%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 + + R + +C+ C+ CE +CP Q + I Sbjct: 94 PITEMSQYPKIKRGIELNQSKCVLCEQCELVCP-QCAIDVERELPERKSLVLGEITIKKD 152 Query: 102 KCIYCGLCQEACPVDAIVEGPN 123 C+ CG+C E CP DAI PN Sbjct: 153 ACVLCGICAEYCPADAIELIPN 174 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 35/89 (39%), Gaps = 5/89 (5%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 R R + C+ C +C ICP AI + G + DI KC+ Sbjct: 14 EISRSGVEKRVLKWDDCTCVGCGICSEICPTSAIEMGPLGAIFKGELDAPKLDIS-EKCV 72 Query: 105 YCGLCQEACPVDA----IVEGPNFEFATE 129 CG+C ACP DA I + P E + Sbjct: 73 LCGMCACACPFDAVKLSINDKPITEMSQY 101 Score = 42.4 bits (98), Expect = 0.018, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 28/75 (37%), Gaps = 8/75 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRC--------HDGTRRTVRYDIDMIKCIYCGLCQ 110 + C+ CK+CE CP AI + +ID C+ CG C Sbjct: 190 DLDACVYCKVCEKACPHNAIEAICYKCPLASRIKEPELYKEIKGQTNIDKDLCVSCGWCA 249 Query: 111 EACPVDAIVEGPNFE 125 CP DAI FE Sbjct: 250 NICPADAITVEKPFE 264 Score = 41.2 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 8/83 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + + F GE + E C AC C ++CP A+ P+ + Sbjct: 252 CPADAITVEKPFEGELII-----DEPACNACGACISVCPCNALVF---PQPEKQGDKVPN 303 Query: 96 YDIDMIKCIYCGLCQEACPVDAI 118 ++ CI CG C +CPVDA+ Sbjct: 304 VVVNQDVCILCGACTHSCPVDAL 326 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 8/64 (12%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 ++ C++C C ICPA AIT+E ID C CG C CP + Sbjct: 236 NIDKDLCVSCGWCANICPADAITVEKPFEGEL--------IIDEPACNACGACISVCPCN 287 Query: 117 AIVE 120 A+V Sbjct: 288 ALVF 291 Score = 38.9 bits (89), Expect = 0.24, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 4/65 (6%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR----YDIDMIKCIYCGLCQEAC 113 + E+C+ C +C CP A+ + + + + +++ KC+ C C+ C Sbjct: 66 DISEKCVLCGMCACACPFDAVKLSINDKPITEMSQYPKIKRGIELNQSKCVLCEQCELVC 125 Query: 114 PVDAI 118 P AI Sbjct: 126 PQCAI 130 >gi|146292947|ref|YP_001183371.1| electron transport complex protein RnfB [Shewanella putrefaciens CN-32] gi|145564637|gb|ABP75572.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella putrefaciens CN-32] gi|319426524|gb|ADV54598.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella putrefaciens 200] Length = 199 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 23/62 (37%), Gaps = 10/62 (16%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C CP AI + + + C C LC E CPVD I Sbjct: 112 DECIGCTKCIQACPVDAIIGAGK----------LMHTVLTTDCTGCDLCVEPCPVDCIDM 161 Query: 121 GP 122 P Sbjct: 162 IP 163 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 12/34 (35%), Positives = 16/34 (47%) Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ I +CI C C +ACPVDAI Sbjct: 96 NAEAQSQVKKVAFIREDECIGCTKCIQACPVDAI 129 >gi|187923233|ref|YP_001894875.1| ferredoxin [Burkholderia phytofirmans PsJN] gi|187714427|gb|ACD15651.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia phytofirmans PsJN] Length = 279 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ CI C LC CP AI + + + C C LC CPVD I Sbjct: 85 DEQVCIGCTLCMQACPVDAIVGAPKQ----------MHTVIVELCTGCDLCVPPCPVDCI 134 Query: 119 VEGP 122 P Sbjct: 135 ALPP 138 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 14/21 (66%), Positives = 15/21 (71%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C LC +ACPVDAI Sbjct: 84 IDEQVCIGCTLCMQACPVDAI 104 >gi|78222780|ref|YP_384527.1| Iron-sulfur cluster-binding protein [Geobacter metallireducens GS-15] gi|78194035|gb|ABB31802.1| Iron-sulfur cluster-binding protein [Geobacter metallireducens GS-15] Length = 320 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 10/83 (12%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 PF+ ++ G + CI C LC+ C AI + + Sbjct: 146 CPFDCPKSATNDVGFQGAIWPVLYADECIGCGLCDKSCTEDAIVMGDDGKP--------- 196 Query: 96 YDIDMIKCIYCGLCQEACPVDAI 118 C+YCG C + CP +A Sbjct: 197 -RFIPENCLYCGDCLKVCPSEAW 218 Score = 37.4 bits (85), Expect = 0.74, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 3/51 (5%) Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 CP + G V Y +CI CGLC ++C DAIV G + Sbjct: 146 CPFDCPKSATNDVGFQGAIWPVLY---ADECIGCGLCDKSCTEDAIVMGDD 193 >gi|134301119|ref|YP_001114615.1| hydrogenase [Desulfotomaculum reducens MI-1] gi|134053819|gb|ABO51790.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Desulfotomaculum reducens MI-1] Length = 594 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 7/85 (8%) Query: 59 GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDM--IKCIYCGLCQEACPV 115 +CI C+ CE C Q I SG +I M C YCG C CP Sbjct: 163 DANKCIYCRRCETACNEVQTCGILSGIGRGFNAFVGPFANIPMVESSCTYCGQCVMVCPT 222 Query: 116 DAIVEGPNFEFATETRQELYYDKER 140 A+ E + T+ E D ++ Sbjct: 223 AALTEV----YHTDKVWEAINDPDK 243 >gi|323694963|ref|ZP_08109113.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Clostridium symbiosum WAL-14673] gi|323501053|gb|EGB16965.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Clostridium symbiosum WAL-14673] Length = 261 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 12/88 (13%) Query: 31 KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT 90 ++ E G +P F + ++CI+C C CP I+IE G Sbjct: 157 PVSLVGKIESGPVNPLFYRLFVKDKGFTVSDKCISCGKCALRCPLNNISIEGGKP----- 211 Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + +C +C C CP +AI Sbjct: 212 -------VWKGRCTHCMACIGGCPTEAI 232 >gi|298373183|ref|ZP_06983173.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroidetes oral taxon 274 str. F0058] gi|298276087|gb|EFI17638.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroidetes oral taxon 274 str. F0058] Length = 1184 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 30/109 (27%), Gaps = 23/109 (21%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 EK SP A E CI C C +CP I DI Sbjct: 674 EKRGVSPSVPEWTA--------ENCIQCNQCAYVCPHACIRPFVLDENEQKGFDAKLLDI 725 Query: 99 DMIK---------------CIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 K C+ C C + CP I + A E+ + Sbjct: 726 KSPKEFVGMKYRIQVGVMDCVGCKNCVDVCPGVKIDGVQHKALAMESFE 774 >gi|284161525|ref|YP_003400148.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Archaeoglobus profundus DSM 5631] gi|284011522|gb|ADB57475.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Archaeoglobus profundus DSM 5631] Length = 617 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 24/71 (33%), Gaps = 11/71 (15%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R L + + +C C C + AI ++ ID C CG Sbjct: 553 RKGVKLLPFEILQNKCNNCGECYRVFSCPAIYLDGEK-----------PQIDPALCTSCG 601 Query: 108 LCQEACPVDAI 118 +C CP AI Sbjct: 602 VCARICPERAI 612 >gi|281357693|ref|ZP_06244180.1| nitroreductase [Victivallis vadensis ATCC BAA-548] gi|281315950|gb|EFA99976.1| nitroreductase [Victivallis vadensis ATCC BAA-548] Length = 269 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 11/60 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP + + + +CI CG C CP +AI Sbjct: 9 NSEACIRCGFCIDDCPTCVLEMGEAG-----------PQVREDQCIECGHCVSVCPTEAI 57 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 3/33 (9%) Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 CI CG C + CP + G E + R++ Sbjct: 11 EACIRCGFCIDDCPTCVLEMG---EAGPQVRED 40 >gi|258542560|ref|YP_003187993.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Acetobacter pasteurianus IFO 3283-01] gi|256633638|dbj|BAH99613.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Acetobacter pasteurianus IFO 3283-01] gi|256636697|dbj|BAI02666.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Acetobacter pasteurianus IFO 3283-03] gi|256639750|dbj|BAI05712.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Acetobacter pasteurianus IFO 3283-07] gi|256642806|dbj|BAI08761.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Acetobacter pasteurianus IFO 3283-22] gi|256645861|dbj|BAI11809.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Acetobacter pasteurianus IFO 3283-26] gi|256648914|dbj|BAI14855.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Acetobacter pasteurianus IFO 3283-32] gi|256651901|dbj|BAI17835.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654958|dbj|BAI20885.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Acetobacter pasteurianus IFO 3283-12] Length = 1195 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 24/87 (27%), Gaps = 23/87 (26%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDG----------------TRRTVRYDIDMI 101 + CI C C +CP I ++ G + Sbjct: 693 WNPDTCIQCGQCSIVCPHSVIRAKTYEEKDLGGAPESFKSAPVNARGYPDSRFTLQFYVE 752 Query: 102 KCIYCGLCQEACP-------VDAIVEG 121 C CG+C E CP AI G Sbjct: 753 DCTGCGVCVENCPAINPDGETRAINMG 779 >gi|255527515|ref|ZP_05394383.1| ferredoxin [Clostridium carboxidivorans P7] gi|255508785|gb|EET85157.1| ferredoxin [Clostridium carboxidivorans P7] Length = 252 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 20/65 (30%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + E C+ C LC C S Y CI CG C CP +A Sbjct: 121 DNTENCVLCGLCAKACKKLGTGAISTVNRGIYKEVDTPYHEPSPACIGCGSCANVCPTNA 180 Query: 118 IVEGP 122 I Sbjct: 181 IKIVD 185 >gi|227831526|ref|YP_002833306.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Sulfolobus islandicus L.S.2.15] gi|227457974|gb|ACP36661.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Sulfolobus islandicus L.S.2.15] Length = 94 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 27/75 (36%), Gaps = 11/75 (14%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G + + +CI CK+C CP I +G +D C CG+ Sbjct: 30 GAWRIVKPVVDYNKCIGCKVCFIFCPESTIVPSNGKV-----------RVDYEYCKGCGV 78 Query: 109 CQEACPVDAIVEGPN 123 C CPV AI Sbjct: 79 CANVCPVKAISMVNE 93 >gi|206901578|ref|YP_002250818.1| iron-sulfur cluster-binding protein [Dictyoglomus thermophilum H-6-12] gi|206740681|gb|ACI19739.1| iron-sulfur cluster-binding protein [Dictyoglomus thermophilum H-6-12] Length = 266 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 27/77 (35%), Gaps = 5/77 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-----DIDMIKCIYCGLCQEAC 113 E+C C LC CP +T+ R+ + CI CG+C++ C Sbjct: 168 DIEKCTGCGLCVKACPRGILTLLPINIPLLLGCRSELPGPEARKVCSKACIGCGICEKVC 227 Query: 114 PVDAIVEGPNFEFATET 130 P AI F Sbjct: 228 PKGAIKMDGRFPVIDYN 244 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 11/62 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI C +CE +CP AI ++ ID C CG+C E CP A+ Sbjct: 213 CSKACIGCGICEKVCPKGAIKMDG-----------RFPVIDYNLCDGCGICVEKCPTKAL 261 Query: 119 VE 120 + Sbjct: 262 IL 263 Score = 40.5 bits (93), Expect = 0.072, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 10/59 (16%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 Y C+ C +CP AI + ID+ KC CGLC +ACP Sbjct: 135 YKGCTTGCLGFGDCVKVCPFDAIYMGEDGLPK----------IDIEKCTGCGLCVKACP 183 >gi|126727112|ref|ZP_01742949.1| dihydropyrimidine dehydrogenase [Rhodobacterales bacterium HTCC2150] gi|126703540|gb|EBA02636.1| dihydropyrimidine dehydrogenase [Rhodobacterales bacterium HTCC2150] Length = 434 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 8/74 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117 + CI+C C A C E ++ + +C+ C LC E CPV+ Sbjct: 343 NQNDCISCGRCFAAC-------EDTSHQAIAMSDDRKFSVVDAECVACNLCVEVCPVEGC 395 Query: 118 IVEGPNFEFATETR 131 I P + + R Sbjct: 396 ITMVPQTAGSVDPR 409 >gi|146311788|ref|YP_001176862.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [Enterobacter sp. 638] gi|145318664|gb|ABP60811.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Enterobacter sp. 638] Length = 1174 Score = 46.6 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPVGTTRWEKRNIAEAIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 P A +++ R G + + C C LC E CP Sbjct: 700 PHSAIRAKVVSPEEMENAPSSLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCPA 757 Query: 116 --------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 758 KDRQNPEIKAINMMSRLEHVEEEK 781 >gi|332983267|ref|YP_004464708.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Mahella australiensis 50-1 BON] gi|332700945|gb|AEE97886.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Mahella australiensis 50-1 BON] Length = 366 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 10/63 (15%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 + EE+C + C C A + + + Y I+ C YC C ACP Sbjct: 180 FNWDEEKCEHDRECIKACRYNANSFDEDGK----------YHINYDNCTYCQHCVNACPT 229 Query: 116 DAI 118 A+ Sbjct: 230 GAL 232 >gi|332800413|ref|YP_004461912.1| NADH dehydrogenase (quinone) [Tepidanaerobacter sp. Re1] gi|332698148|gb|AEE92605.1| NADH dehydrogenase (quinone) [Tepidanaerobacter sp. Re1] Length = 625 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 13/82 (15%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 EK S +G L P+ +C C C ICPA AI ++ I Sbjct: 556 EKRCPSKVCKGLGQLAIDPD---KCRGCGKCRKICPASAIEGKTREPHK----------I 602 Query: 99 DMIKCIYCGLCQEACPVDAIVE 120 D+ +C+ C C +ACP DAI E Sbjct: 603 DITRCLRCLACIDACPFDAIRE 624 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 17/49 (34%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + + + + ID KC CG C++ CP AI Sbjct: 544 KYFKDEYMAHVVEKRCPSKVCKGLGQLAIDPDKCRGCGKCRKICPASAI 592 >gi|325299905|ref|YP_004259822.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides salanitronis DSM 18170] gi|324319458|gb|ADY37349.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides salanitronis DSM 18170] Length = 297 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 25/76 (32%), Gaps = 8/76 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------DMIKCIYCGLCQ 110 EE+C AC C CP I I + CI CG C Sbjct: 169 DEEKCTACGACAKACPRNIIEIRPKGKNSRRVYVQCVNKDKGAVARKACTAACIGCGKCV 228 Query: 111 EACPVDAIVEGPNFEF 126 + CP +AI N + Sbjct: 229 KVCPFEAITLENNLAY 244 Score = 41.6 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 9/60 (15%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C C + C AI + ++D KC CG C +ACP + I P Sbjct: 142 CLGCGDCVSACQFGAIRMNPETGLP---------EVDEEKCTACGACAKACPRNIIEIRP 192 Score = 38.9 bits (89), Expect = 0.26, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 11/60 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C C +CP +AIT+E+ ID KC C C+ CP AI Sbjct: 217 CTAACIGCGKCVKVCPFEAITLENNLAY-----------IDPAKCKSCRKCETECPQGAI 265 >gi|325968335|ref|YP_004244527.1| formate dehydrogenase, subunit alpha [Vulcanisaeta moutnovskia 768-28] gi|323707538|gb|ADY01025.1| formate dehydrogenase, alpha subunit [Vulcanisaeta moutnovskia 768-28] Length = 897 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 5/88 (5%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD- 97 E P + + C+ C+ C C + ++ G V +D Sbjct: 116 EPAPIIPDIKIDDTHPAIVFNPSACVMCRKCVIACSID-QSNDTITVIGRGLDTRVGFDL 174 Query: 98 ---IDMIKCIYCGLCQEACPVDAIVEGP 122 + + C+ CG C +ACP A++E Sbjct: 175 DVPMGVSSCVSCGACIDACPTGALMERD 202 >gi|297616733|ref|YP_003701892.1| hydrogenase, Fe-only [Syntrophothermus lipocalidus DSM 12680] gi|297144570|gb|ADI01327.1| hydrogenase, Fe-only [Syntrophothermus lipocalidus DSM 12680] Length = 563 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 1/67 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +C C C +C + + I KC+ CG C ACPV AI Sbjct: 138 DPSKCTLCGRCVEVCNDIQTVGALEIKDGVVQTVDGKPLI-ETKCVMCGQCALACPVGAI 196 Query: 119 VEGPNFE 125 E + Sbjct: 197 TEKEEID 203 >gi|262368735|ref|ZP_06062064.1| electron transport complex protein [Acinetobacter johnsonii SH046] gi|262316413|gb|EEY97451.1| electron transport complex protein [Acinetobacter johnsonii SH046] Length = 264 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 30/85 (35%), Gaps = 10/85 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E+ + G + E+ CI C C + CP AI + + I Sbjct: 68 EESIWPIQADGRPQRMKAIIREDECIGCTKCISACPVDAIIGSGK----------LMHSI 117 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPN 123 C C LC CPVD I P+ Sbjct: 118 LTDLCTGCELCIPPCPVDCIDLIPD 142 >gi|258545780|ref|ZP_05706014.1| electron transport complex protein RnfC [Cardiobacterium hominis ATCC 15826] gi|258518970|gb|EEV87829.1| electron transport complex protein RnfC [Cardiobacterium hominis ATCC 15826] Length = 630 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 2/70 (2%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP + + + + CI CG+C CP AI Sbjct: 371 EESPCIRCSRCADACPME-LLPQQLLWYSQSDEHKRLKQYRLYDCIECGICAAVCP-SAI 428 Query: 119 VEGPNFEFAT 128 + + Sbjct: 429 PLVQYYRHSK 438 >gi|227499762|ref|ZP_03929862.1| ferredoxin [Anaerococcus tetradius ATCC 35098] gi|227218148|gb|EEI83414.1| ferredoxin [Anaerococcus tetradius ATCC 35098] Length = 57 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 27/65 (41%), Gaps = 11/65 (16%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 Y E CI+C CE CP AI Y+ID CI CG C C Sbjct: 1 MAYRIDENTCISCGSCEGECPVGAIAQGDAA-----------YEIDADACIDCGSCAAVC 49 Query: 114 PVDAI 118 PV+AI Sbjct: 50 PVEAI 54 Score = 34.3 bits (77), Expect = 6.5, Method: Composition-based stats. Identities = 14/27 (51%), Positives = 16/27 (59%) Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGP 122 Y ID CI CG C+ CPV AI +G Sbjct: 3 YRIDENTCISCGSCEGECPVGAIAQGD 29 >gi|239617465|ref|YP_002940787.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Kosmotoga olearia TBF 19.5.1] gi|239506296|gb|ACR79783.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Kosmotoga olearia TBF 19.5.1] Length = 354 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 30/68 (44%), Gaps = 14/68 (20%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C+AC +CE CP AITIE R ID CI CG C C A Sbjct: 193 NCVACGMCERHCPVGAITIEGVAR------------IDYDICIGCGQCIAMCNYGA--MV 238 Query: 122 PNFEFATE 129 P ++ +TE Sbjct: 239 PKWDSSTE 246 >gi|164688084|ref|ZP_02212112.1| hypothetical protein CLOBAR_01729 [Clostridium bartlettii DSM 16795] gi|164602497|gb|EDQ95962.1| hypothetical protein CLOBAR_01729 [Clostridium bartlettii DSM 16795] Length = 598 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 7/85 (8%) Query: 59 GEERCIACKLCEAIC-PAQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115 ++CI C+ CE +C Q + + SG T ++ D+ K C +CG C CP Sbjct: 147 DNDKCILCRRCETMCNQVQKVGVLSGVNRGFSTEIGTFFETDLAKTECTFCGQCINVCPT 206 Query: 116 DAIVEGPNFEFATETRQELYYDKER 140 A++E N + A L KE+ Sbjct: 207 GALLEKDNTDEAW----GLLAQKEK 227 >gi|150401260|ref|YP_001325026.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanococcus aeolicus Nankai-3] gi|150013963|gb|ABR56414.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus aeolicus Nankai-3] Length = 314 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 9/87 (10%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 G +L + +++C+ C LCE CP ++ + I Sbjct: 225 PIPPIQNILGRFSLIKMSIDKDKCVDCGLCEKNCPMDIKLLD---------YKNENKRIL 275 Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEF 126 +CI C C CP AI F+F Sbjct: 276 STECILCSTCSSVCPKHAISTKIKFDF 302 Score = 33.5 bits (75), Expect = 9.2, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 6/99 (6%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 +F + L ++ + T NYP + + L C+ +CP Sbjct: 167 LFLSFGIVLYFWNRGYTIYNYPEREILWFVVGLLLYYLSGIILAFAFNDNRAFCKYLCP- 225 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + G ++ ID KC+ CGLC++ CP Sbjct: 226 -----IPPIQNILGRFSLIKMSIDKDKCVDCGLCEKNCP 259 >gi|76666788|emb|CAJ31166.1| Iron-sulfur-binding protein, glutamate synthase (dsrL/gltD) [uncultured sulfate-reducing bacterium] Length = 558 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 12/63 (19%), Positives = 20/63 (31%), Gaps = 2/63 (3%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + RC++C +C + + Y + C+ C C E CP Sbjct: 497 DEAVRCMSCGMCFDCGT--CWSYCQENAIIKPLVKGEAYKFKLEYCVGCAKCAETCPCGY 554 Query: 118 IVE 120 I Sbjct: 555 IEM 557 >gi|120598968|ref|YP_963542.1| electron transport complex protein RnfB [Shewanella sp. W3-18-1] gi|120559061|gb|ABM24988.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella sp. W3-18-1] Length = 199 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 23/62 (37%), Gaps = 10/62 (16%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C CP AI + + + C C LC E CPVD I Sbjct: 112 DECIGCTKCIQACPVDAIIGAGK----------LMHTVLTTDCTGCDLCVEPCPVDCIDM 161 Query: 121 GP 122 P Sbjct: 162 IP 163 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 12/34 (35%), Positives = 16/34 (47%) Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ I +CI C C +ACPVDAI Sbjct: 96 NAEAQSQVKKVAFIREDECIGCTKCIQACPVDAI 129 >gi|319902323|ref|YP_004162051.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides helcogenes P 36-108] gi|319417354|gb|ADV44465.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides helcogenes P 36-108] Length = 320 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 8/81 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------DMIKCIYCGLCQ 110 E +C AC C CP I I + + CI CG C Sbjct: 169 DEAKCTACGACAKACPKNIIEIRPQGKKSRRIYVQCVNKDKGAVARKACTVACIGCGKCV 228 Query: 111 EACPVDAIVEGPNFEFATETR 131 + CP +AI N + + Sbjct: 229 KVCPFEAITLENNLAYIDPNK 249 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 9/65 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C C A C AI + ++D KC CG C +ACP + I Sbjct: 138 CSYGCLGCGDCVAACQFGAIHMNPETGLP---------EVDEAKCTACGACAKACPKNII 188 Query: 119 VEGPN 123 P Sbjct: 189 EIRPQ 193 Score = 40.1 bits (92), Expect = 0.099, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 11/60 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C C +CP +AIT+E+ ID KC C C+EACP D I Sbjct: 217 CTVACIGCGKCVKVCPFEAITLENNLAY-----------IDPNKCKSCRKCEEACPQDTI 265 >gi|317486932|ref|ZP_07945742.1| glycyl-radical enzyme activating family protein [Bilophila wadsworthia 3_1_6] gi|316921807|gb|EFV43083.1| glycyl-radical enzyme activating family protein [Bilophila wadsworthia 3_1_6] Length = 299 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 11/62 (17%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C C C +C A + R+ D +C+ CG C E CP A Sbjct: 53 QNLCSGCGHCVQVCTHGAA-----------IEKGGRFLRDFSRCVGCGACAEQCPTTASS 101 Query: 120 EG 121 Sbjct: 102 MS 103 >gi|315651314|ref|ZP_07904342.1| electron transport complex protein RnfB [Eubacterium saburreum DSM 3986] gi|315486466|gb|EFU76820.1| electron transport complex protein RnfB [Eubacterium saburreum DSM 3986] Length = 271 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 28/90 (31%), Gaps = 11/90 (12%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 K P+E + + E CIAC +C C AI + Sbjct: 183 KKLIDLVPYETFTFVHCNSQDKGKAVKEVCEVGCIACTMCVRACEDDAIHMNGNVAL--- 239 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 ID KCI CG C CP I Sbjct: 240 --------IDYSKCINCGKCAAKCPTKVIQ 261 Score = 38.2 bits (87), Expect = 0.35, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 5/78 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGT-----RRTVRYDIDMIKCIYCGLCQEAC 113 ++C+AC C CP + I + + ++ + CI C +C AC Sbjct: 167 DRDKCVACGKCVDACPKKLIDLVPYETFTFVHCNSQDKGKAVKEVCEVGCIACTMCVRAC 226 Query: 114 PVDAIVEGPNFEFATETR 131 DAI N ++ Sbjct: 227 EDDAIHMNGNVALIDYSK 244 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 11/64 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C +C +I I G +D KC+ CG C +ACP I Sbjct: 138 CSYGCMGFGSCVKVCEFDSIHIVDGIAL-----------VDRDKCVACGKCVDACPKKLI 186 Query: 119 VEGP 122 P Sbjct: 187 DLVP 190 >gi|227874298|ref|ZP_03992485.1| electron transport complex, RnfABCDGE type, B subunit [Oribacterium sinus F0268] gi|227839849|gb|EEJ50292.1| electron transport complex, RnfABCDGE type, B subunit [Oribacterium sinus F0268] Length = 295 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 12/83 (14%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P++K + CIAC +CE CP AI + + Sbjct: 195 VPYKKKHIVSCKNLLKGKAVKDSCSIGCIACGICEKNCPFDAIHVLNDLA---------- 244 Query: 96 YDIDMIKCIYCGLCQEACPVDAI 118 + KC CG+C + CP AI Sbjct: 245 --VMNEKCTDCGICAQKCPTSAI 265 Score = 40.9 bits (94), Expect = 0.061, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 5/66 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRT-----VRYDIDMIKCIYCGLCQEAC 113 +E+C AC C CP I+ + H + + D I CI CG+C++ C Sbjct: 173 DKEKCTACGACIKACPKALISFVPYKKKHIVSCKNLLKGKAVKDSCSIGCIACGICEKNC 232 Query: 114 PVDAIV 119 P DAI Sbjct: 233 PFDAIH 238 >gi|254486347|ref|ZP_05099552.1| dihydroorotate dehydrogenase family protein [Roseobacter sp. GAI101] gi|214043216|gb|EEB83854.1| dihydroorotate dehydrogenase family protein [Roseobacter sp. GAI101] Length = 425 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 37/131 (28%), Gaps = 15/131 (11%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRY----PNGEERCIACKLC 69 +E + Y T + + Y E+ CI+C C Sbjct: 288 QEMISGLS---EYLDDKGMTSVDQLVRRAVPNVTDWNQLNLNYVAKAKINEDLCISCGRC 344 Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DAIVEGPNFEFAT 128 A C E + + +C+ C LC CPV + I T Sbjct: 345 FAAC-------EDTSHQAIAMSEDRTFSVIDAECVACNLCVNVCPVENCITMETMAPGTT 397 Query: 129 ETRQELYYDKE 139 + R +KE Sbjct: 398 DPRTGKVVEKE 408 >gi|83589786|ref|YP_429795.1| thiamine pyrophosphate enzyme [Moorella thermoacetica ATCC 39073] gi|83572700|gb|ABC19252.1| Thiamine pyrophosphate enzyme [Moorella thermoacetica ATCC 39073] Length = 592 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 22/65 (33%), Gaps = 12/65 (18%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 Y + CI+C C A+ + C CGLC + CPV Sbjct: 538 YQVDQIACISCHTCIKELGCPALRPDGNGVQ------------IAATCTGCGLCSQVCPV 585 Query: 116 DAIVE 120 AI E Sbjct: 586 AAIEE 590 >gi|116754867|ref|YP_843985.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanosaeta thermophila PT] gi|116666318|gb|ABK15345.1| formylmethanofuran dehydrogenase, subunit F [Methanosaeta thermophila PT] Length = 429 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 4/87 (4%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E+ R L + C C LC ICP +AI+++ P + D+ Sbjct: 178 EREKDPRDLRPYEQLLIDED---LCDYCGLCVGICPEEAISVKGDPLDATLDLKGSI-DV 233 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFE 125 D +CI CG C CP +A+ FE Sbjct: 234 DQERCIGCGRCAIVCPYEAMDVIRPFE 260 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+C C +C C +A + + R + ID C YCGLC CP +AI Sbjct: 157 DREKCNLCGICARFC--KAFVLLEREKDPRDLRPYEQLLIDEDLCDYCGLCVGICPEEAI 214 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 8/79 (10%) Query: 59 GEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 + C+ C +C CP A + + D R +R +C+ C LC+ CP Sbjct: 70 DLDACVFCGMCANFCPVNAYRFTVNDVDIKTDDRYPRLLRKAEPNERCLPCTLCEPVCPT 129 Query: 116 DAIVEGPNFEFATETRQEL 134 +AI N +TR++ Sbjct: 130 EAITVVFN-----KTREDF 143 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 29/80 (36%), Gaps = 10/80 (12%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93 I P+E F GE L R + + C C +CPA ++ R Sbjct: 246 IVCPYEAMDVIRPFEGEIRLVRDRLAKCDPVGCHGCFNVCPADCWYVDDQGRIG------ 299 Query: 94 VRYDIDMIKCIYCGLCQEAC 113 + +CI CG C AC Sbjct: 300 ----VVEDQCILCGACSRAC 315 Score = 41.6 bits (96), Expect = 0.039, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 1/74 (1%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R + + C C +C ++CP +A+ G ID+ C++CG Sbjct: 20 RSGDITKILDYDYKICNGCAICVSLCPTKALQSGPILEIATGLDAPPVL-IDLDACVFCG 78 Query: 108 LCQEACPVDAIVEG 121 +C CPV+A Sbjct: 79 MCANFCPVNAYRFT 92 Score = 34.7 bits (78), Expect = 4.3, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 22/65 (33%), Gaps = 3/65 (4%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +ERCI C C +CP +A+ + R D + C C CP D Sbjct: 234 DQERCIGCGRCAIVCPYEAMDVIRPFEGEIRLVRDRLAKCDP---VGCHGCFNVCPADCW 290 Query: 119 VEGPN 123 Sbjct: 291 YVDDQ 295 Score = 34.3 bits (77), Expect = 5.2, Method: Composition-based stats. Identities = 13/32 (40%), Positives = 15/32 (46%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 D D C C +C CP A+ GP E AT Sbjct: 29 DYDYKICNGCAICVSLCPTKALQSGPILEIAT 60 >gi|320450384|ref|YP_004202480.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Thermus scotoductus SA-01] gi|320150553|gb|ADW21931.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Thermus scotoductus SA-01] Length = 1167 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 23/82 (28%), Gaps = 16/82 (19%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQ------------AITIESGPRCHDGTRRTV- 94 RG + + C+ C C +CP A E P + Sbjct: 672 RGIAEFIPTWD-PQVCVQCGKCVLVCPHAVIRAKVVPEEALAQAPEGFPHRKAMWKELTG 730 Query: 95 --RYDIDMIKCIYCGLCQEACP 114 I C C LC E CP Sbjct: 731 EFTLAISPGDCTGCSLCVEVCP 752 >gi|268324765|emb|CBH38353.1| conserved hypothetical protein, 4Fe-4S binding domain family [uncultured archaeon] Length = 895 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 6/70 (8%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM------IKCIYCGLCQEA 112 E+ C+ C +C +CP +AI + CI CG C Sbjct: 812 DEQICVGCGVCVDVCPVEAIELTEELVPVVTFGVATVISGMKKVAKVGDGCIGCGSCASY 871 Query: 113 CPVDAIVEGP 122 CP A+ Sbjct: 872 CPSGAMSLKH 881 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 22/55 (40%) Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 C A+ A A + V +D C+ CG+C + CPV+AI Sbjct: 782 CMAMSTAAASRACVLLAKNSLETPAVTSVVDEQICVGCGVCVDVCPVEAIELTEE 836 >gi|262372076|ref|ZP_06065355.1| electron transport complex protein [Acinetobacter junii SH205] gi|262312101|gb|EEY93186.1| electron transport complex protein [Acinetobacter junii SH205] Length = 266 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 27/75 (36%), Gaps = 10/75 (13%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G + E+ CI C C + CP AI + + I C C L Sbjct: 81 GRPQQMKAIIREDECIGCTKCISACPVDAIIGSGK----------LMHTILTDLCTGCEL 130 Query: 109 CQEACPVDAIVEGPN 123 C CPVD I P+ Sbjct: 131 CIPPCPVDCIDLVPD 145 >gi|224371980|ref|YP_002606146.1| PflC2 [Desulfobacterium autotrophicum HRM2] gi|223694699|gb|ACN17982.1| PflC2 [Desulfobacterium autotrophicum HRM2] Length = 302 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 13/84 (15%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + CI C C A CP QA+ + D ++KCI CG C E CP +A Sbjct: 52 YNGQSCIGCGECVAACPEQALELNENGVARD-----------LVKCINCGHCAEICPANA 100 Query: 118 IVEGPNFEFATETRQELYYDKERL 141 + + +T++ E+ K+RL Sbjct: 101 MEKTGRCH-STDSLMEMI-KKDRL 122 Score = 37.0 bits (84), Expect = 0.83, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 15/50 (30%) Query: 74 PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +G R + CI CG C ACP A+ N Sbjct: 28 MNGCPLSCPWCHNPEGLSLESRVTYNGQSCIGCGECVAACPEQALELNEN 77 >gi|198276949|ref|ZP_03209480.1| hypothetical protein BACPLE_03154 [Bacteroides plebeius DSM 17135] gi|198270474|gb|EDY94744.1| hypothetical protein BACPLE_03154 [Bacteroides plebeius DSM 17135] Length = 293 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 10/73 (13%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 H + + + CI CK C ICP+ T++ ++ CI CG C Sbjct: 6 FHTMAQIHINQNTCIRCKKCVRICPSALFTLQEDKGIE----------VNTDDCISCGHC 55 Query: 110 QEACPVDAIVEGP 122 CP ++I Sbjct: 56 VAVCPTNSIEHAD 68 >gi|116235064|dbj|BAF34981.1| trichloroethene reductive dehalogenase [uncultured Dehalococcoides sp.] Length = 554 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 3/60 (5%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID---MIKCIYCGLCQEACPVD 116 E C C +C CP QAI+ E Y+ KCI C C+ CP Sbjct: 434 REFCKTCGICAEHCPTQAISHEGPRYDSPYWDCVSGYEGWHLDYHKCINCTNCEAFCPFF 493 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%) Query: 103 CIYCGLCQEACPVDAI-VEGPNFE 125 C CG+C E CP AI EGP ++ Sbjct: 437 CKTCGICAEHCPTQAISHEGPRYD 460 >gi|310828874|ref|YP_003961231.1| hypothetical protein ELI_3306 [Eubacterium limosum KIST612] gi|308740608|gb|ADO38268.1| hypothetical protein ELI_3306 [Eubacterium limosum KIST612] Length = 1168 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 31/99 (31%), Gaps = 10/99 (10%) Query: 25 RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI---CPAQAITIE 81 + + + P E+ +T + + RC+ C + A + Sbjct: 527 KKYKRPPMAHLSPEERKNTFEEIVKGYTPEQAREEASRCLECGCHDYFECKLVDYANQYD 586 Query: 82 SGPRCHDGTRRTVRYDI-------DMIKCIYCGLCQEAC 113 P G + ++ + KCI CG C AC Sbjct: 587 VAPERFSGENEELIFEDDHPFIVRNPNKCILCGRCVRAC 625 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 19/65 (29%), Gaps = 3/65 (4%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY---DIDMIKCIYCGLCQEACPV 115 +CI C C C G V + CI CG C CP Sbjct: 611 NPNKCILCGRCVRACDEVVGVTALGLMNRGFDTVVVPALGGKLADSGCISCGTCISVCPT 670 Query: 116 DAIVE 120 A+ E Sbjct: 671 GALGE 675 >gi|282163287|ref|YP_003355672.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Methanocella paludicola SANAE] gi|282155601|dbj|BAI60689.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Methanocella paludicola SANAE] Length = 138 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 24/69 (34%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + CI C C CP A + Y +D KC CG C EACP Sbjct: 43 PDEHRLRICIQCGRCADACPMDAFYQDFNILTTSEQ---GIYRLDESKCTGCGECIEACP 99 Query: 115 VDAIVEGPN 123 + P+ Sbjct: 100 TKVLQFYPD 108 Score = 38.2 bits (87), Expect = 0.39, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 32/78 (41%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + R E+ CI C CE IC + + + + + CI CG C +A Sbjct: 1 MPRLTKNEDVCITCHRCETICAWVHEVVFNPDKGRVIVDLDYPDEHRLRICIQCGRCADA 60 Query: 113 CPVDAIVEGPNFEFATET 130 CP+DA + N +E Sbjct: 61 CPMDAFYQDFNILTTSEQ 78 >gi|268678836|ref|YP_003303267.1| cobyrinic acid ac-diamide synthase [Sulfurospirillum deleyianum DSM 6946] gi|268616867|gb|ACZ11232.1| Cobyrinic acid ac-diamide synthase [Sulfurospirillum deleyianum DSM 6946] Length = 292 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 26/110 (23%), Positives = 42/110 (38%), Gaps = 19/110 (17%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E C C C +C AI +E+G RY +D + C CG C++ C ++ Sbjct: 63 HIDPETCRNCGRCAKVCRFDAIVLENG-----------RYVVDELSCEGCGYCEKVCRLN 111 Query: 117 AIVEGPNFEFATETRQ-----ELYYDKERLLNNGDRWESEIVRNIVTDSP 161 AI A T Q ++ + K L G ++V + + Sbjct: 112 AISMNERLAGAWFTSQTKYGSDMVHAK---LGIGAENSGKLVAKVKKEGK 158 >gi|262402292|ref|ZP_06078853.1| formate dehydrogenase-O major subunit [Vibrio sp. RC586] gi|262351074|gb|EEZ00207.1| formate dehydrogenase-O major subunit [Vibrio sp. RC586] Length = 1396 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 11/71 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM-----------IKCIYCG 107 RCI+C C C Q++ + R VR D +C+ CG Sbjct: 631 DANRCISCGQCIQACREQSVQGVLSFMQTEKGRPVVRPDCRPNFGGQGVSMGDSRCVQCG 690 Query: 108 LCQEACPVDAI 118 C +ACPV A+ Sbjct: 691 ACVQACPVGAM 701 Score = 38.9 bits (89), Expect = 0.21, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 26/74 (35%), Gaps = 5/74 (6%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 + P R + G+ RC+ C C CP A+T T T I Sbjct: 663 RPVVRPDCRPNFGGQGVSMGDSRCVQCGACVQACPVGAMTDARDKSQGRDTPLTKVETI- 721 Query: 100 MIKCIYCGL-CQEA 112 C YCG+ C+ Sbjct: 722 ---CTYCGVGCKLV 732 >gi|261867803|ref|YP_003255725.1| electron transport complex protein RnfC [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413135|gb|ACX82506.1| electron transport complex protein RnfC [Aggregatibacter actinomycetemcomitans D11S-1] Length = 745 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 36/111 (32%), Gaps = 13/111 (11%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 E+ CI C C CP + + + + + CI CG+C CP Sbjct: 373 EEEKNCIRCSACSDACPVK-LMPQQLYWFARSEDHEKSEEYSLKDCIECGVCAYVCPSH- 430 Query: 118 IVEGPNFEFATETRQEL----YYDKERL-LNNGDRWESEIVRNIVTDSPYR 163 I F R++ K +L R+E R + + R Sbjct: 431 IPLIQYF-----RREKAKIWEIKHKAKLAEEAKIRFEQRQAR-LEREEQER 475 >gi|271502701|ref|YP_003335727.1| glutamate synthase small subunit [Dickeya dadantii Ech586] gi|270346256|gb|ACZ79021.1| glutamate synthase, small subunit [Dickeya dadantii Ech586] Length = 667 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 31/86 (36%), Gaps = 15/86 (17%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRR 92 YP + PR R H + + C C C +CP QA+ R+ Sbjct: 30 RYPENREDFHPRIRVYH--QGDQHTAVTCRHCEDSPCAKVCPTQALV-----------RK 76 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAI 118 + KCI C C ACP AI Sbjct: 77 QDGIQLIAEKCIGCKTCVLACPFGAI 102 Score = 41.6 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 11/75 (14%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC---GLCQEACPVDA 117 E+CI CK C CP AI++E+ + + CI C EACP A Sbjct: 85 EKCIGCKTCVLACPFGAISVENQAQGASAHK--------CDLCIGRPEGQACVEACPTQA 136 Query: 118 IVEGPNFEFATETRQ 132 + + R+ Sbjct: 137 LHLVSERSLEEQRRE 151 Score = 38.5 bits (88), Expect = 0.30, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 20/66 (30%), Gaps = 6/66 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY----DIDMIKCIYCGL--CQEA 112 + CI C CE C D R Y + C +C C + Sbjct: 8 NAKDCIGCNACEIACVISHNHGRYPENREDFHPRIRVYHQGDQHTAVTCRHCEDSPCAKV 67 Query: 113 CPVDAI 118 CP A+ Sbjct: 68 CPTQAL 73 >gi|227874128|ref|ZP_03992334.1| iron-sulfur-binding membrane protein [Oribacterium sinus F0268] gi|227840040|gb|EEJ50464.1| iron-sulfur-binding membrane protein [Oribacterium sinus F0268] Length = 307 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 15/69 (21%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 RY ++CI C C+A+C Q + + ++CI CG C+ A Sbjct: 240 FFRYTLDHQKCIHCGRCKAVCEMQCD---------------PVQNCNDLECIRCGKCKNA 284 Query: 113 CPVDAIVEG 121 CPVDAI G Sbjct: 285 CPVDAIACG 293 >gi|239624920|ref|ZP_04667951.1| dihydroorotate dehydrogenase [Clostridiales bacterium 1_7_47_FAA] gi|239521306|gb|EEQ61172.1| dihydroorotate dehydrogenase [Clostridiales bacterium 1_7_47FAA] Length = 362 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 27/106 (25%), Positives = 35/106 (33%), Gaps = 19/106 (17%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 L+E A RY F + + K + E C C LCE Sbjct: 271 LEELSKALG---RYGFSSVEDVKACGLKKEDPSLTPSYPVI-----DREACTGCGLCERN 322 Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CP A+ + +D KC CGLC+ CP AI Sbjct: 323 CPYFALEMRDKKPF-----------VDNDKCFGCGLCESRCPAQAI 357 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 10/25 (40%), Positives = 12/25 (48%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 ID C CGLC+ CP A+ Sbjct: 308 IDREACTGCGLCERNCPYFALEMRD 332 >gi|224368797|ref|YP_002602958.1| FdhA6 [Desulfobacterium autotrophicum HRM2] gi|223691513|gb|ACN14796.1| FdhA6 [Desulfobacterium autotrophicum HRM2] Length = 921 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 24/85 (28%), Gaps = 7/85 (8%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC---PAQAITIESGPRCHDGTRRT 93 P K +R RCI C C C Sbjct: 151 PQSKSKYPMERVNPFIIR----DFSRCILCGRCVQACREIQVNNAIDFGYRGADTKIIAG 206 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAI 118 + C++CG C +ACPV A+ Sbjct: 207 ADVALKDSDCVFCGECVDACPVGAL 231 >gi|332652331|ref|ZP_08418076.1| protein HymB [Ruminococcaceae bacterium D16] gi|332517477|gb|EGJ47080.1| protein HymB [Ruminococcaceae bacterium D16] Length = 626 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 26/76 (34%), Gaps = 10/76 (13%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 + E C C C CP AI+ + + + ID KCI Sbjct: 560 HCPHCNGRKKELQIDPELCKGCGKCMKQCPMDAISGQ----------IRMPHVIDTEKCI 609 Query: 105 YCGLCQEACPVDAIVE 120 CG C CP AI E Sbjct: 610 KCGACWGCCPFGAIRE 625 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 15/39 (38%) Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C R ID C CG C + CP+DAI Sbjct: 555 HVVDKHCPHCNGRKKELQIDPELCKGCGKCMKQCPMDAI 593 >gi|328474563|gb|EGF45368.1| electron transport complex protein RnfC [Vibrio parahaemolyticus 10329] Length = 907 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 13/107 (12%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 CI C C CPA + + ++++ CI CG C CP I Sbjct: 377 ECIRCGQCAEACPAS-LLPQQLQWHAKAEEYDKLEELNLKDCIECGACAFVCP-SEIPLV 434 Query: 122 PNF-----EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + E T T++ ++ +L R+E + R + + R Sbjct: 435 QYYRQAKAEIRTRTQEAEAAERAKL-----RFEEKKAR-MEREKAER 475 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 19/43 (44%) Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + +Q ++ TR + ++CI CG C EACP Sbjct: 347 LPHSQVPITKTANCILAPTRHEISAHQYEMECIRCGQCAEACP 389 >gi|298387520|ref|ZP_06997072.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides sp. 1_1_14] gi|298259727|gb|EFI02599.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides sp. 1_1_14] Length = 1185 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 28/81 (34%), Gaps = 15/81 (18%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG A N E CI C C +CP A + T Sbjct: 676 RGVAAFVPEWN-AENCIQCNKCAYVCPHASIRPFVLDAEEQKGAKFEQLKAVGKAFDGMT 734 Query: 94 VRYDIDMIKCIYCGLCQEACP 114 R +D++ C+ CG C + CP Sbjct: 735 FRIQVDVLDCLGCGNCADICP 755 >gi|239908986|ref|YP_002955728.1| putative Fe hydrogenase [Desulfovibrio magneticus RS-1] gi|239798853|dbj|BAH77842.1| putative Fe hydrogenase [Desulfovibrio magneticus RS-1] Length = 475 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 27/75 (36%), Gaps = 11/75 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C+ C +CP A+T G ID +C+ CG C + C A Sbjct: 18 DPNLCTGCRRCAEVCPVGAVTGPQGQAQ----------TIDAERCVLCGQCVQVCCAFAA 67 Query: 119 VEG-PNFEFATETRQ 132 P + A RQ Sbjct: 68 PFDEPAHDPAAIRRQ 82 Score = 37.0 bits (84), Expect = 0.90, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 12/34 (35%) Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 R ID C C C E CPV A+ Sbjct: 4 RPVIAPGVAPVIAIDPNLCTGCRRCAEVCPVGAV 37 >gi|225572307|ref|ZP_03781171.1| hypothetical protein RUMHYD_00601 [Blautia hydrogenotrophica DSM 10507] gi|225040189|gb|EEG50435.1| hypothetical protein RUMHYD_00601 [Blautia hydrogenotrophica DSM 10507] Length = 587 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 5/69 (7%) Query: 59 GEERCIACKLCEAICP--AQAITIESGPRCHDGTRR---TVRYDIDMIKCIYCGLCQEAC 113 ++CIAC C +C + E G R ++ CI CG C + C Sbjct: 154 DMDKCIACGRCVTVCEEVQKIGIYEMKCNEETGERYVNTKKDVNLSATACINCGQCVKVC 213 Query: 114 PVDAIVEGP 122 PV A+ E Sbjct: 214 PVAALTEKD 222 >gi|224539806|ref|ZP_03680345.1| hypothetical protein BACCELL_04716 [Bacteroides cellulosilyticus DSM 14838] gi|224518552|gb|EEF87657.1| hypothetical protein BACCELL_04716 [Bacteroides cellulosilyticus DSM 14838] Length = 373 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 10/65 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C +C C A+ + +G + ID KC+ CG C C D Sbjct: 192 DTESCIGCNICVKHCAHDAVHLNAGHKAE----------IDYAKCVGCGQCVALCQYDGA 241 Query: 119 VEGPN 123 + G Sbjct: 242 IMGDE 246 >gi|194289439|ref|YP_002005346.1| benzoyl-CoA oxygenase component a [Cupriavidus taiwanensis LMG 19424] gi|193223274|emb|CAQ69279.1| Benzoyl-CoA oxygenase component A [Cupriavidus taiwanensis LMG 19424] Length = 414 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 11/67 (16%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 ++++ E CI C CE CP AIT + Y + C C C Sbjct: 6 IIKQHLIDPEICIRCNTCEDTCPIDAITHDD-----------RNYVVRADVCNGCNACLS 54 Query: 112 ACPVDAI 118 CP AI Sbjct: 55 PCPTGAI 61 Score = 34.3 bits (77), Expect = 5.2, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 14/25 (56%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 ID CI C C++ CP+DAI Sbjct: 12 IDPEICIRCNTCEDTCPIDAITHDD 36 >gi|169830370|ref|YP_001716352.1| hydrogenase, Fe-only [Candidatus Desulforudis audaxviator MP104C] gi|169637214|gb|ACA58720.1| hydrogenase, Fe-only [Candidatus Desulforudis audaxviator MP104C] Length = 580 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 30/93 (32%), Gaps = 7/93 (7%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93 + +P + +R +CI C+ C +C + DG Sbjct: 124 VRFPRTQPVYPVDDSSVAIIR----DPNKCILCRRCVTVCQQVQSVSAIEFKKVDGEAVV 179 Query: 94 V---RYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 R + C+ CG C CPV AI E Sbjct: 180 APVLRAPLAETNCVNCGQCILVCPVGAIYERDE 212 >gi|17555800|ref|NP_499717.1| ABC transporter, class E family member (abce-1) [Caenorhabditis elegans] gi|5824775|emb|CAB54424.1| C. elegans protein Y39E4B.1, partially confirmed by transcript evidence [Caenorhabditis elegans] Length = 610 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 30/83 (36%), Gaps = 1/83 (1%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 KG + LR ++RC K C C G +C + I Sbjct: 4 KGPLIKNNETDVPLRIAIVEKDRCKP-KNCGLACKRACPVNRQGKQCIVVEATSTISQIS 62 Query: 100 MIKCIYCGLCQEACPVDAIVEGP 122 I CI CG+C + CP DAI Sbjct: 63 EILCIGCGICVKKCPYDAIKIIN 85 >gi|29347157|ref|NP_810660.1| pyruvate-flavodoxin oxidoreductase [Bacteroides thetaiotaomicron VPI-5482] gi|253571894|ref|ZP_04849299.1| pyruvate-flavodoxin oxidoreductase [Bacteroides sp. 1_1_6] gi|29339056|gb|AAO76854.1| pyruvate-flavodoxin oxidoreductase [Bacteroides thetaiotaomicron VPI-5482] gi|251838491|gb|EES66577.1| pyruvate-flavodoxin oxidoreductase [Bacteroides sp. 1_1_6] Length = 1185 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 28/81 (34%), Gaps = 15/81 (18%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG A N E CI C C +CP A + T Sbjct: 676 RGVAAFVPEWN-AENCIQCNKCAYVCPHASIRPFVLDAEEQKGAKFEQLKAVGKAFDGMT 734 Query: 94 VRYDIDMIKCIYCGLCQEACP 114 R +D++ C+ CG C + CP Sbjct: 735 FRIQVDVLDCLGCGNCADICP 755 >gi|113969169|ref|YP_732962.1| formate dehydrogenase subunit alpha [Shewanella sp. MR-4] gi|113883853|gb|ABI37905.1| formate dehydrogenase, alpha subunit [Shewanella sp. MR-4] Length = 1432 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 22/75 (29%), Gaps = 15/75 (20%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK---------------C 103 RCI+C C +C Q+ M + C Sbjct: 651 DANRCISCGKCVDVCQQQSGHCAIQFSQDSYQALPQEMTQHMERRAPRVGFSASMADSLC 710 Query: 104 IYCGLCQEACPVDAI 118 + CG C + CP A+ Sbjct: 711 VQCGNCVQVCPTGAL 725 >gi|117921736|ref|YP_870928.1| formate dehydrogenase subunit alpha [Shewanella sp. ANA-3] gi|117614068|gb|ABK49522.1| formate dehydrogenase, alpha subunit [Shewanella sp. ANA-3] Length = 1432 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 22/75 (29%), Gaps = 15/75 (20%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK---------------C 103 RCI+C C +C Q+ M + C Sbjct: 651 DANRCISCGKCVDVCQQQSGHCAIQFSQDSYQALPQEMTQHMERRAPRVGFSASMADSHC 710 Query: 104 IYCGLCQEACPVDAI 118 + CG C + CP A+ Sbjct: 711 VQCGNCVQVCPTGAL 725 Score = 35.5 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 18/48 (37%), Gaps = 4/48 (8%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 C+ C C +CP A+ R D T I C YCG+ Sbjct: 708 SHCVQCGNCVQVCPTGALVDARDKRQGDCTELKTASTI----CTYCGV 751 >gi|109899273|ref|YP_662528.1| electron transport complex protein RnfB [Pseudoalteromonas atlantica T6c] gi|109701554|gb|ABG41474.1| electron transport complex, RnfABCDGE type, B subunit [Pseudoalteromonas atlantica T6c] Length = 188 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 10/62 (16%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C CP AI + + + +C C LC + CPVD I Sbjct: 116 DECIGCTKCIQACPVDAILGAAKQ----------MHTVISDECTGCDLCVDPCPVDCIDM 165 Query: 121 GP 122 P Sbjct: 166 IP 167 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 12/21 (57%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 I +CI C C +ACPVDAI Sbjct: 113 IREDECIGCTKCIQACPVDAI 133 >gi|116748614|ref|YP_845301.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116697678|gb|ABK16866.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Syntrophobacter fumaroxidans MPOB] Length = 990 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 19/59 (32%), Gaps = 6/59 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + C C C +CP P+ + I C CG C ACP A Sbjct: 917 DQTMCRGCGKCVDVCPYG------SPQLVEVGEGVFVSQIQEALCKGCGACAVACPTGA 969 Score = 42.4 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 27/110 (24%), Positives = 35/110 (31%), Gaps = 28/110 (25%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPA---QAITIESGPRCHDGTRRTVR----YDI 98 F E + ++CI+C C CP A G R Y I Sbjct: 15 NFHAEVLQKPRYVDLDKCISCGACAGKCPTVVIDAFNAGLGKRKAIYKYYAQAIPSGYAI 74 Query: 99 DMIKC------IYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLL 142 D C CG+C + CP DA+ G KE+LL Sbjct: 75 DAENCRQLGHGKKCGICAKVCPADAVDYGQ---------------KEKLL 109 >gi|255525714|ref|ZP_05392646.1| hydrogenase large subunit domain protein [Clostridium carboxidivorans P7] gi|255510616|gb|EET86924.1| hydrogenase large subunit domain protein [Clostridium carboxidivorans P7] Length = 458 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 32/106 (30%), Gaps = 22/106 (20%) Query: 35 NYPFEKGSTSPRFRGEHALRRY---------------PNGEERCIACKLCEAICPAQAIT 79 P +K + + RG + +E C C +C CP AI Sbjct: 61 KCPIDKYTVTDACRGCIQHKCMEVCPANAITRVAGSAYINQELCKECGMCRKSCPYGAIA 120 Query: 80 IESGPRCHDGTR-------RTVRYDIDMIKCIYCGLCQEACPVDAI 118 P I+ +CI CG C ACP AI Sbjct: 121 EVMRPCKRVCPTGALEINSDNKMAMIEKEECINCGACMAACPFGAI 166 >gi|220904426|ref|YP_002479738.1| ferredoxin-dependent glutamate synthase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868725|gb|ACL49060.1| ferredoxin-dependent glutamate synthase [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 541 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 14/93 (15%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR------------RTVRYDIDMI 101 + + C C C A C AI R + + Sbjct: 16 WKIDYRPDLCTRCGSCVAACTFAAIEPSRVRRHIQSHKTLDSAQEYAVPLVIKQKTSISH 75 Query: 102 KCIYCGLCQEACPVDAIVEGPNFE--FATETRQ 132 C+ CG+C+++CP AI N + FA R+ Sbjct: 76 ACVGCGMCEKSCPTGAIRPVRNMDQRFALLARE 108 Score = 34.7 bits (78), Expect = 4.9, Method: Composition-based stats. Identities = 9/26 (34%), Positives = 10/26 (38%) Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAI 118 + D C CG C AC AI Sbjct: 15 CWKIDYRPDLCTRCGSCVAACTFAAI 40 >gi|227828960|ref|YP_002830740.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus islandicus M.14.25] gi|227831698|ref|YP_002833478.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus islandicus L.S.2.15] gi|229580655|ref|YP_002839055.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus islandicus Y.G.57.14] gi|229583508|ref|YP_002841907.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus islandicus Y.N.15.51] gi|229586167|ref|YP_002844669.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus islandicus M.16.27] gi|238621152|ref|YP_002915978.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus islandicus M.16.4] gi|284999255|ref|YP_003421023.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Sulfolobus islandicus L.D.8.5] gi|227458146|gb|ACP36833.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus islandicus L.S.2.15] gi|227460756|gb|ACP39442.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus islandicus M.14.25] gi|228011371|gb|ACP47133.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus islandicus Y.G.57.14] gi|228014224|gb|ACP49985.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus islandicus Y.N.15.51] gi|228021217|gb|ACP56624.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus islandicus M.16.27] gi|238382222|gb|ACR43310.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus islandicus M.16.4] gi|284447151|gb|ADB88653.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Sulfolobus islandicus L.D.8.5] gi|323476069|gb|ADX86675.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus islandicus REY15A] gi|323478792|gb|ADX84030.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus islandicus HVE10/4] Length = 104 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 2/64 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CIA C CP P ++ ++ CI+C C CPV AI Sbjct: 42 DFDLCIADGSCINACPVNVFQWYDTPGHPASEKKADP--VNEQACIFCMACVNVCPVAAI 99 Query: 119 VEGP 122 P Sbjct: 100 DVKP 103 >gi|150400069|ref|YP_001323836.1| thiamine pyrophosphate binding domain-containing protein [Methanococcus vannielii SB] gi|150012772|gb|ABR55224.1| thiamine pyrophosphate protein domain protein TPP-binding [Methanococcus vannielii SB] Length = 615 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 13/69 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA- 117 E+C CK+C AI ++ CI CGLC CP +A Sbjct: 559 DTEKCTGCKICFEELGCPAIVMDRDIPN------------ITSNCIACGLCVAVCPFNAI 606 Query: 118 IVEGPNFEF 126 I EG +E Sbjct: 607 INEGNCYEL 615 >gi|13542329|ref|NP_112017.1| putative ATPase RIL [Thermoplasma volcanium GSS1] Length = 589 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 1/62 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++RC K C C + + D + I CI CG+C CP AI Sbjct: 7 DKDRCHP-KKCHHECQYYCPPVRNHVMAIDFPDPDGQPLISETLCIGCGICIRRCPFGAI 65 Query: 119 VE 120 Sbjct: 66 RI 67 >gi|14325764|dbj|BAB60667.1| RNase L inhibitor [Thermoplasma volcanium GSS1] Length = 592 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 1/62 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++RC K C C + + D + I CI CG+C CP AI Sbjct: 10 DKDRCHP-KKCHHECQYYCPPVRNHVMAIDFPDPDGQPLISETLCIGCGICIRRCPFGAI 68 Query: 119 VE 120 Sbjct: 69 RI 70 >gi|167038500|ref|YP_001666078.1| RnfABCDGE type electron transport complex subunit B [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167038757|ref|YP_001661742.1| RnfABCDGE type electron transport complex subunit B [Thermoanaerobacter sp. X514] gi|256751369|ref|ZP_05492248.1| electron transport complex, RnfABCDGE type, B subunit [Thermoanaerobacter ethanolicus CCSD1] gi|300913657|ref|ZP_07130974.1| electron transport complex, RnfABCDGE type, B subunit [Thermoanaerobacter sp. X561] gi|307723328|ref|YP_003903079.1| RnfABCDGE type electron transport complex subunit B [Thermoanaerobacter sp. X513] gi|320116895|ref|YP_004187054.1| RnfABCDGE type electron transport complex subunit B [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166852997|gb|ABY91406.1| electron transport complex, RnfABCDGE type, B subunit [Thermoanaerobacter sp. X514] gi|166857334|gb|ABY95742.1| electron transport complex, RnfABCDGE type, B subunit [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256749751|gb|EEU62776.1| electron transport complex, RnfABCDGE type, B subunit [Thermoanaerobacter ethanolicus CCSD1] gi|300890342|gb|EFK85487.1| electron transport complex, RnfABCDGE type, B subunit [Thermoanaerobacter sp. X561] gi|307580389|gb|ADN53788.1| electron transport complex, RnfABCDGE type, B subunit [Thermoanaerobacter sp. X513] gi|319929986|gb|ADV80671.1| electron transport complex, RnfABCDGE type, B subunit [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 271 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 31/90 (34%), Gaps = 11/90 (12%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 P+++ + N CI C++C CP AIT E+ Sbjct: 182 KGIIELVPYDQEVIIKCKSNDPGKVVRSNCSVGCIGCQICVKSCPENAITFENYLA---- 237 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 I+ KC CG+C E CP I Sbjct: 238 -------KINYEKCTNCGICAEKCPTGTIF 260 Score = 40.9 bits (94), Expect = 0.055, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 11/66 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + C+ C C +C AI I +G ID KC+ C C E CP Sbjct: 135 KSCSYGCLGCGTCVDVCDYGAIQIINGVAV-----------IDKEKCVACKACIEVCPKG 183 Query: 117 AIVEGP 122 I P Sbjct: 184 IIELVP 189 Score = 38.2 bits (87), Expect = 0.36, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 5/69 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCIYCGLCQEAC 113 +E+C+ACK C +CP I + + + V + CI C +C ++C Sbjct: 166 DKEKCVACKACIEVCPKGIIELVPYDQEVIIKCKSNDPGKVVRSNCSVGCIGCQICVKSC 225 Query: 114 PVDAIVEGP 122 P +AI Sbjct: 226 PENAITFEN 234 >gi|331083159|ref|ZP_08332275.1| hypothetical protein HMPREF0992_01199 [Lachnospiraceae bacterium 6_1_63FAA] gi|330404548|gb|EGG84088.1| hypothetical protein HMPREF0992_01199 [Lachnospiraceae bacterium 6_1_63FAA] Length = 449 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 36/105 (34%), Gaps = 8/105 (7%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E + G L E+ CI C CE++CPA + + + + Sbjct: 348 ELFYVTKNTSGILVLPDSQYEEQPCIRCAGCESVCPAG-LVPYQIEFAYLEEDYDLCESL 406 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLN 143 +CI CG C CP E + TR K+R+ Sbjct: 407 YASECIACGCCSYICPAKR-------ELSVRTRMARDMVKQRMRE 444 >gi|332161708|ref|YP_004298285.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|318605796|emb|CBY27294.1| pyruvate-flavodoxin oxidoreductase [Yersinia enterocolitica subsp. palearctica Y11] gi|325665938|gb|ADZ42582.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 1177 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 36/144 (25%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A + C C C A C Sbjct: 646 MLAGLGDAL------PVSAFPPDGTWPVGTTQWEKRNIAEDIPIWQPDLCTQCNHCVAAC 699 Query: 74 PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 P A ++E R G + + C C LC E CP Sbjct: 700 PHSAIRAKVIQPEAMSGAPDSLQSLEVKARDMRGQKY--VLQVAPEDCTGCNLCYEVCPA 757 Query: 116 --------DAIVEGPNFEFATETR 131 AI P E E + Sbjct: 758 KDRQNPEIKAINMKPRLEHLVEEK 781 >gi|319790365|ref|YP_004151998.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Thermovibrio ammonificans HB-1] gi|317114867|gb|ADU97357.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Thermovibrio ammonificans HB-1] Length = 98 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 25/92 (27%), Positives = 35/92 (38%), Gaps = 10/92 (10%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E GS+ GE R +++C+ C LC CP I ++ I Sbjct: 17 EPGSSEKYNTGEWRAWRPVFEQDKCVNCMLCWVFCPDSCILVKEEKMVG----------I 66 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 D C CG+C CP A+ P + F E Sbjct: 67 DYDHCKGCGICAFECPTKALEMKPEYLFREED 98 >gi|317152026|ref|YP_004120074.1| hydrogenase, Fe-only [Desulfovibrio aespoeensis Aspo-2] gi|317152315|ref|YP_004120363.1| hydrogenase, Fe-only [Desulfovibrio aespoeensis Aspo-2] gi|316942277|gb|ADU61328.1| hydrogenase, Fe-only [Desulfovibrio aespoeensis Aspo-2] gi|316942566|gb|ADU61617.1| hydrogenase, Fe-only [Desulfovibrio aespoeensis Aspo-2] Length = 446 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 8/69 (11%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + +C AC CEA+C AI + +R +D CI CG C Sbjct: 49 IYFVQVDATKCEACGECEAVCATGAIQPINDD--------GIRAVVDPAACINCGQCLTH 100 Query: 113 CPVDAIVEG 121 CP AI EG Sbjct: 101 CPYGAIYEG 109 >gi|294643334|ref|ZP_06721156.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides ovatus SD CC 2a] gi|292641321|gb|EFF59517.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bacteroides ovatus SD CC 2a] Length = 868 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 28/81 (34%), Gaps = 15/81 (18%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG A N E CI C C +CP A + T Sbjct: 362 RGVAAFVPEWN-AENCIQCNKCAYVCPHASIRPFVLDAEEQKGAKFEQLKAVGKAFDGMT 420 Query: 94 VRYDIDMIKCIYCGLCQEACP 114 R +D++ C+ CG C + CP Sbjct: 421 FRIQVDVLDCLGCGNCADICP 441 >gi|255657073|ref|ZP_05402482.1| putative nitroreductase [Clostridium difficile QCD-23m63] Length = 258 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 31/84 (36%), Gaps = 11/84 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E CI C LC+ CP I IE+ I C+ CG C CP AI Sbjct: 10 DKELCIGCGLCKNDCPVNNIIIENKKSV-----------IKKQDCLMCGHCAAICPQKAI 58 Query: 119 VEGPNFEFATETRQELYYDKERLL 142 E E + D + LL Sbjct: 59 TLTGFDEPPIELTNKPNLDSDELL 82 Score = 35.5 bits (80), Expect = 2.6, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 16/33 (48%) Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + +D CI CGLC+ CPV+ I+ Sbjct: 1 MKYQHIIKVDKELCIGCGLCKNDCPVNNIIIEN 33 >gi|224369245|ref|YP_002603409.1| IorA2 [Desulfobacterium autotrophicum HRM2] gi|223691962|gb|ACN15245.1| IorA2 [Desulfobacterium autotrophicum HRM2] Length = 607 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 9/62 (14%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C C C + A+ ++S R DID+ C CG+C CP +IV Sbjct: 555 DDCDGCGYCVSHFECPALVLDSE---------NKRVDIDLALCTGCGVCISVCPKGSIVH 605 Query: 121 GP 122 Sbjct: 606 VN 607 >gi|254173765|ref|ZP_04880437.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Thermococcus sp. AM4] gi|214032457|gb|EEB73287.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Thermococcus sp. AM4] Length = 635 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 29/81 (35%), Gaps = 9/81 (11%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 P R E+RC CK C + A+ + + ID + C Sbjct: 561 PVIRRGEIGEIPKVIEDRCTGCKACILLTGCPALVYDPETN---------KVRIDGLLCT 611 Query: 105 YCGLCQEACPVDAIVEGPNFE 125 CG+C + CP DAI E Sbjct: 612 GCGVCNQTCPFDAIKFPSELE 632 >gi|172037232|ref|YP_001803733.1| bidirectional hydrogenase complex protein HoxU [Cyanothece sp. ATCC 51142] gi|171698686|gb|ACB51667.1| hydrogenase chain U [Cyanothece sp. ATCC 51142] Length = 238 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 26/89 (29%), Gaps = 12/89 (13%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRR 92 +P K S G RCI C C +C A + R Sbjct: 128 QFPQRKVDLSHPQFGM--------DHNRCILCTRCVRVCDEIEGAHVWDVASRGGQSFIV 179 Query: 93 TVRYDIDMI--KCIYCGLCQEACPVDAIV 119 + C CG C +ACP AI Sbjct: 180 SGINQPWGDVNACTSCGKCVDACPTGAIF 208 >gi|154498762|ref|ZP_02037140.1| hypothetical protein BACCAP_02753 [Bacteroides capillosus ATCC 29799] gi|150272152|gb|EDM99356.1| hypothetical protein BACCAP_02753 [Bacteroides capillosus ATCC 29799] Length = 447 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 28/123 (22%), Positives = 42/123 (34%), Gaps = 31/123 (25%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +RC C C CP +AI + +G I +CI CG+C + CP AI Sbjct: 11 EYKRCRGCTTCIKSCPTEAIRVRNGKAA-----------ILNARCIDCGVCIQVCPHKAI 59 Query: 119 -------VEGPNFEFATETRQELYY----DKER-------LLNNG--DRWESEIVRNIVT 158 F + + Y + + LL G D +E +V+ Sbjct: 60 KSISDPLDMLKKFRYCVALPEPALYGQFHNMDDIDIILNGLLEIGFHDVYEVSKAAELVS 119 Query: 159 DSP 161 D Sbjct: 120 DYQ 122 >gi|126664787|ref|ZP_01735771.1| iron-sulfur cluster-binding protein [Marinobacter sp. ELB17] gi|126631113|gb|EBA01727.1| iron-sulfur cluster-binding protein [Marinobacter sp. ELB17] Length = 659 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 9/69 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++C C C ++CP A+ C+ CG+C+ CP AI Sbjct: 511 NSDKCTLCLACVSLCPTGALGDHPD---------RPEVQFTENACVQCGVCESTCPETAI 561 Query: 119 VEGPNFEFA 127 + P + + Sbjct: 562 ILKPRLDLS 570 Score = 42.0 bits (97), Expect = 0.030, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 11/55 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C +CP +AI +I+ C CG C CP A+ Sbjct: 291 CTRCLDVCPTEAIFSAGD-----------HVEINSDICAGCGSCAAVCPTSAVTM 334 Score = 35.5 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 1/51 (1%) Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 A A IE+ G +I+ KC C C CP A+ + P+ Sbjct: 486 VAAMADRIEAPIALPAGAPYGAI-EINSDKCTLCLACVSLCPTGALGDHPD 535 >gi|88603039|ref|YP_503217.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methanospirillum hungatei JF-1] gi|88188501|gb|ABD41498.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Methanospirillum hungatei JF-1] Length = 369 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 12/81 (14%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R +H + E RC+ C C CP AI + +D Sbjct: 177 PPIGKRDQHQGMQAEINESRCVGCGYCVTQCPFDAIHMGKKA------------TVDKSV 224 Query: 103 CIYCGLCQEACPVDAIVEGPN 123 C C C + CP AI+ Sbjct: 225 CYGCSACLQVCPEQAILFHWE 245 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 4/62 (6%) Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVRY----DIDMIKCIYCGLCQEACPVDAIVE 120 K AI + +R +I+ +C+ CG C CP DAI Sbjct: 155 HVKGHALAGFGGAIKNVAMGCAPPIGKRDQHQGMQAEINESRCVGCGYCVTQCPFDAIHM 214 Query: 121 GP 122 G Sbjct: 215 GK 216 >gi|52549644|gb|AAU83493.1| heterodisulfide reductase subunit A and related polyferredoxins [uncultured archaeon GZfos29E12] Length = 895 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 6/70 (8%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM------IKCIYCGLCQEA 112 E+ C+ C +C +CP +AI + CI CG C Sbjct: 812 DEQICVGCGVCVDVCPVEAIELTEELVPVVTFGVATVVSAMKKVAKVGDGCIGCGSCASY 871 Query: 113 CPVDAIVEGP 122 CP A+ Sbjct: 872 CPSGAMSLKH 881 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 22/55 (40%) Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 C A+ A A + V +D C+ CG+C + CPV+AI Sbjct: 782 CMAMSTAAASRACVLLAKNFMETPAVSAVVDEQICVGCGVCVDVCPVEAIELTEE 836 >gi|77919204|ref|YP_357019.1| NAD-reducing iron-only hydrogenase large subunit [Pelobacter carbinolicus DSM 2380] gi|77545287|gb|ABA88849.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Pelobacter carbinolicus DSM 2380] Length = 585 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 3/67 (4%) Query: 59 GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115 ++CI C+ CE +C Q I SG +++++ C +CG C CPV Sbjct: 148 DMDKCILCRRCETMCNDVQTCGILSGVDRGFNAVVAPPFEMNLEDSACTFCGQCAAVCPV 207 Query: 116 DAIVEGP 122 A+VE Sbjct: 208 GALVERD 214 >gi|77919184|ref|YP_356999.1| MinD family ATPase [Pelobacter carbinolicus DSM 2380] gi|77545267|gb|ABA88829.1| MinD superfamily P-loop ATPase [Pelobacter carbinolicus DSM 2380] Length = 282 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 27/109 (24%), Gaps = 18/109 (16%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEH-------ALRRYPNGEERCIACKLCEAIC 73 + L + +K + + + F + E C C C C Sbjct: 18 SVNLAHMLGSKVQLLDCDVEEPNAHLFLQSEPKEQTVVTIPVPQINEGLCECCGECAKFC 77 Query: 74 PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 AI I C CG C CP AI E Sbjct: 78 EYHAIVSFG-----------TTPLIFPEMCHGCGGCSIVCPKKAIGEID 115 >gi|83950971|ref|ZP_00959704.1| formate dehydrogenase, alpha subunit [Roseovarius nubinhibens ISM] gi|83838870|gb|EAP78166.1| formate dehydrogenase, alpha subunit [Roseovarius nubinhibens ISM] Length = 920 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 5/67 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI----DMIKCIYCGLCQEACP 114 + CI C LC C + + G +D+ C+ CG C +ACP Sbjct: 147 NLDACIQCGLCVRACR-EVQVNDVIGMAGRGHDAYPTFDMADPMGASTCVACGECVQACP 205 Query: 115 VDAIVEG 121 A++ Sbjct: 206 TGALMPS 212 >gi|323247769|gb|EGA31709.1| electron transport complex protein RnfC [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] Length = 447 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 1/58 (1%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 P E+ CI C C CPA + + G + + CI CG C CP Sbjct: 371 PQEEKSCIRCSACADACPAD-LLPQQLYWFSKGQQHDKATAHHIADCIECGACAWVCP 427 >gi|320160963|ref|YP_004174187.1| indolepyruvate oxidoreductase subunit IorA [Anaerolinea thermophila UNI-1] gi|319994816|dbj|BAJ63587.1| indolepyruvate oxidoreductase subunit IorA [Anaerolinea thermophila UNI-1] Length = 609 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 33/107 (30%), Gaps = 5/107 (4%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 V L+ + K I+ P + A +Y E C C Sbjct: 499 VEGIEKTLKEWMK----ISDPAVLITREECALLPEARAKYVPLEVVEEKCNGCTMCFRVG 554 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 I + +R + ID C C +C + CP DAI+ Sbjct: 555 CPAISKSEKLDPRYQRPLAV-IDPSLCTGCEICAQVCPRDAILFRNQ 600 >gi|302348414|ref|YP_003816052.1| NAD(P)+-dependent formate dehydrogenase, alpha subunit [Acidilobus saccharovorans 345-15] gi|302328826|gb|ADL19021.1| NAD(P)+-dependent formate dehydrogenase, alpha subunit [Acidilobus saccharovorans 345-15] Length = 718 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 23/97 (23%), Gaps = 7/97 (7%) Query: 24 LRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT--IE 81 L FK E+ RC+ C C +C Sbjct: 102 LAELFKRYGVEPGGEERPELVDDSHPLLRF-----DFSRCVLCYSCVRVCDEYIGRLIWR 156 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + R CI C C + CP AI Sbjct: 157 AMYRGQQTVVIPETGKFGTSSCISCRACVDVCPSGAI 193 Score = 33.9 bits (76), Expect = 6.8, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 38/120 (31%), Gaps = 26/120 (21%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 L R ++ + T+ P G CI+C+ C +CP+ AI + Sbjct: 153 LIWRAMYRGQQTVVIPE----------------TGKFGTSSCISCRACVDVCPSGAIVDK 196 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERL 141 C +C +CPV + G + R +L + E L Sbjct: 197 VMSSSVPDRWGETA----------CSMCSLSCPVRVGLSGSRPVYVDGDRGQLPFSAECL 246 >gi|284049225|ref|YP_003399564.1| sulfite reductase, subunit C [Acidaminococcus fermentans DSM 20731] gi|283953446|gb|ADB48249.1| sulfite reductase, subunit C [Acidaminococcus fermentans DSM 20731] Length = 325 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 25/83 (30%), Gaps = 8/83 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + G + RCI+C C C R Sbjct: 146 CPNDCCKVRMHDFGIIGMTEPQFDPSRCISCGACVKKC--------KQLSVEALHMDKFR 197 Query: 96 YDIDMIKCIYCGLCQEACPVDAI 118 ++ KCI CG+C ACP A Sbjct: 198 PVRNVEKCIGCGVCAHACPNRAW 220 >gi|283853442|ref|ZP_06370686.1| ferredoxin-dependent glutamate synthase [Desulfovibrio sp. FW1012B] gi|283571162|gb|EFC19178.1| ferredoxin-dependent glutamate synthase [Desulfovibrio sp. FW1012B] Length = 544 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 27/80 (33%), Gaps = 15/80 (18%) Query: 54 RRYPNGEERCIACKLCEAICPAQA--------------ITIESGPRCHDGTRRTVRYDID 99 + C C C ++CP A ++ P +R D Sbjct: 19 WQVDWDIHTCTLCGRCTSVCPVSAIELGVFRKRTITATPALQKKPASDFSIYYGIRQRTD 78 Query: 100 MI-KCIYCGLCQEACPVDAI 118 +CI CG+C CP +AI Sbjct: 79 PAYRCIGCGMCNMVCPNNAI 98 Score = 37.4 bits (85), Expect = 0.68, Method: Composition-based stats. Identities = 13/30 (43%), Positives = 14/30 (46%), Gaps = 2/30 (6%) Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 V +DI C CG C CPV AI G Sbjct: 19 WQVDWDIHT--CTLCGRCTSVCPVSAIELG 46 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 23/50 (46%) Query: 28 FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA 77 F+ +T P + + F + +R+ + RCI C +C +CP A Sbjct: 48 FRKRTITATPALQKKPASDFSIYYGIRQRTDPAYRCIGCGMCNMVCPNNA 97 >gi|304316606|ref|YP_003851751.1| hypothetical protein Tthe_1147 [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778108|gb|ADL68667.1| protein of unknown function DUF362 [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 378 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 22/124 (17%), Positives = 38/124 (30%), Gaps = 26/124 (20%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M I VS + F + + ++ +H Sbjct: 274 MNIDDAKVSNFDIPTL-RGFSVT--------------EKIPPFLMKYLDKHVKPYPIFDY 318 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C +C +C + CP +A+ + +D+ CI C CQE CP A+ Sbjct: 319 DVCKSCGICVSNCPPKALKMIDKK-----------PTVDLKTCIRCFCCQELCPHKAVSI 367 Query: 121 GPNF 124 Sbjct: 368 KKPH 371 >gi|260589727|ref|ZP_05855640.1| Na(+)-translocating NADH-quinone reductase, A subunit [Blautia hansenii DSM 20583] gi|260539967|gb|EEX20536.1| Na(+)-translocating NADH-quinone reductase, A subunit [Blautia hansenii DSM 20583] Length = 449 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 36/105 (34%), Gaps = 8/105 (7%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E + G L E+ CI C CE++CPA + + + + Sbjct: 348 ELFYVTKNTSGILVLPDSQYEEQPCIRCAGCESVCPAG-LVPYQIEFAYLEEDYDLCESL 406 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLN 143 +CI CG C CP E + TR K+R+ Sbjct: 407 YASECIACGCCSYICPAKR-------ELSVRTRMARDMVKQRMRE 444 >gi|253702471|ref|YP_003023660.1| Fis family transcriptional regulator [Geobacter sp. M21] gi|251777321|gb|ACT19902.1| sigma54 specific transcriptional regulator, Fis family [Geobacter sp. M21] Length = 759 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 11/63 (17%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C C C CP +AI +E +I +CI CG C CP A V Sbjct: 9 DHCRKCYSCVRSCPVKAIKVEK-----------SYTEIIPERCIGCGNCMSHCPQHAKVI 57 Query: 121 GPN 123 N Sbjct: 58 ADN 60 >gi|90022045|ref|YP_527872.1| NADH:ubiquinone oxidoreductase subunit RnfB [Saccharophagus degradans 2-40] gi|89951645|gb|ABD81660.1| electron transport complex, RnfABCDGE type, B subunit [Saccharophagus degradans 2-40] Length = 206 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 10/66 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E+ CI C C CP AI + + + + +C C LC E CPVD Sbjct: 116 YIREDECIGCTKCIQACPVDAILGAAKQ----------MHTVIVSECTGCDLCVEPCPVD 165 Query: 117 AIVEGP 122 I P Sbjct: 166 CIDMLP 171 Score = 37.0 bits (84), Expect = 0.88, Method: Composition-based stats. Identities = 12/36 (33%), Positives = 16/36 (44%) Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + + I +CI C C +ACPVDAI Sbjct: 102 DEEHGEESEVPKVAYIREDECIGCTKCIQACPVDAI 137 >gi|20093008|ref|NP_619083.1| glutamine-pyruvate aminotransferase [Methanosarcina acetivorans C2A] gi|19918327|gb|AAM07563.1| glutamine-pyruvate aminotransferase [Methanosarcina acetivorans C2A] Length = 503 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 14/81 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++C+ C C C E R I+ KC C C CP DAI Sbjct: 15 DRDQCMDCGRCIENCSYGVYRREGD-----------RILIESRKCTACLRCVAMCPRDAI 63 Query: 119 VEGPNFEFATETRQELYYDKE 139 E + R + +E Sbjct: 64 TLT---EKPVDYRSHPIWTRE 81 >gi|2467371|dbj|BAA22587.1| ferredoxin [Sulfolobus sp.] Length = 104 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 25/84 (29%), Gaps = 2/84 (2%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 G P + CIA C CP P ++ + Sbjct: 22 VYGPVEPPKVLGIHGTIVGVDFDLCIADGSCITACPVNVFQWYDTPGHPASEKKADP--V 79 Query: 99 DMIKCIYCGLCQEACPVDAIVEGP 122 + CI+C C CPV AI P Sbjct: 80 NEQACIFCMACVNVCPVAAIDVKP 103 >gi|113461204|ref|YP_719273.1| electron transport complex protein RnfC [Haemophilus somnus 129PT] gi|112823247|gb|ABI25336.1| electron transport complex protein [Haemophilus somnus 129PT] Length = 659 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 33/103 (32%), Gaps = 2/103 (1%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C CP + + + + +CI CGLC CP I Sbjct: 379 QSCIRCSACSDACPVH-LMPQQLYWFARAEDHKKSEEYALKECIECGLCAYVCPSH-IPL 436 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 F E+ ++ R+E+ R + R Sbjct: 437 IQYFRQEKAKIWEIKEKAQKSEEAKIRFEARQARLEKEEQERR 479 >gi|330446485|ref|ZP_08310137.1| electron transport complex, RnfABCDGE type, C subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490676|dbj|GAA04634.1| electron transport complex, RnfABCDGE type, C subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 852 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 37/104 (35%), Gaps = 9/104 (8%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C C +CP+ + + + ++ CI CG C CP I Sbjct: 379 CIRCSACADVCPSS-LLPQQLQWYAKDQNYEKCEEYNLQDCIECGACAYVCP-SEIPLVQ 436 Query: 123 NFEFAT---ETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + A R + + ER R+E++ R + D R Sbjct: 437 YYRQAKAEIWARSQDEINAERARQ---RFEAKQAR-MDRDKAER 476 >gi|323486819|ref|ZP_08092137.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Clostridium symbiosum WAL-14163] gi|323399832|gb|EGA92212.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Clostridium symbiosum WAL-14163] Length = 261 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 12/88 (13%) Query: 31 KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT 90 ++ E G +P F + ++CI+C C CP I+IE G Sbjct: 157 PVSLVGKIESGPVNPLFYRLFVKDKGFTVSDKCISCGKCALRCPLNNISIEGGKP----- 211 Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + +C +C C CP +AI Sbjct: 212 -------VWKGRCTHCMACIGGCPTEAI 232 >gi|310642487|ref|YP_003947245.1| glutamate synthase family, small subunit, putative [Paenibacillus polymyxa SC2] gi|309247437|gb|ADO57004.1| Glutamate synthase family, small subunit, putative [Paenibacillus polymyxa SC2] Length = 209 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 26/71 (36%), Gaps = 13/71 (18%) Query: 56 YPNGEERCIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 +C C+ C CP QAI E G ID +CI C C AC Sbjct: 78 DTYVPVQCRHCENAPCAHACPVQAIRQEDG-----------VVMIDEDRCIGCTSCVLAC 126 Query: 114 PVDAIVEGPNF 124 P AI P + Sbjct: 127 PFGAIEVSPVY 137 Score = 34.7 bits (78), Expect = 4.1, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 26/84 (30%), Gaps = 11/84 (13%) Query: 59 GEERCIACKLCEAICPA--------QAITIESGPRCHDGTRRTVRYD-IDMIKCIYCGL- 108 +CI CK CE C A A D ++C +C Sbjct: 32 DGGQCIGCKACELACFAVHGQAGGIGASVGTVSVPVVPKVYVVRAGDTYVPVQCRHCENA 91 Query: 109 -CQEACPVDAIVEGPNFEFATETR 131 C ACPV AI + E R Sbjct: 92 PCAHACPVQAIRQEDGVVMIDEDR 115 >gi|296533711|ref|ZP_06896262.1| 4Fe-4S ferredoxin [Roseomonas cervicalis ATCC 49957] gi|296265958|gb|EFH12032.1| 4Fe-4S ferredoxin [Roseomonas cervicalis ATCC 49957] Length = 666 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 19/67 (28%), Gaps = 9/67 (13%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C C +CP A C+ CGLC CP I P Sbjct: 518 CTLCLACTMVCPTGAFAANPDRPELS---------FLEDACVQCGLCATTCPEKVISLTP 568 Query: 123 NFEFATE 129 A E Sbjct: 569 RLNLAPE 575 Score = 40.5 bits (93), Expect = 0.084, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 16/54 (29%), Gaps = 11/54 (20%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 C C +CP AIT I C CG C CP A Sbjct: 282 TGCTRCLDLCPTGAITPGKE-----------SVQISAEICAGCGACAAICPTGA 324 >gi|289191700|ref|YP_003457641.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus sp. FS406-22] gi|288938150|gb|ADC68905.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus sp. FS406-22] Length = 654 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 7/88 (7%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAIT-------IESGPRCHDGTRRTVRYDI 98 F+ + + E +C C C +CP + + +Y I Sbjct: 229 NFKVKIMKKPRYVDETKCTGCGQCAEVCPIEVPNEFDMGLGMRKAIYKPFPQAVPSKYTI 288 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEF 126 D CI CGLC + C AI EF Sbjct: 289 DKEHCIECGLCAKVCGPKAIDFNQKPEF 316 Score = 37.8 bits (86), Expect = 0.53, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 7/64 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 EE C C +C CP A + + ++ C CG C CP A+ Sbjct: 580 NEEICGGCGVCVKQCPYGAPRLVEKD-------GRLVCEVIAALCKGCGTCAAGCPSGAL 632 Query: 119 VEGP 122 + Sbjct: 633 EQNH 636 >gi|258545781|ref|ZP_05706015.1| electron transport complex, RnfABCDGE type, B subunit [Cardiobacterium hominis ATCC 15826] gi|258518971|gb|EEV87830.1| electron transport complex, RnfABCDGE type, B subunit [Cardiobacterium hominis ATCC 15826] Length = 186 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 10/60 (16%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C C CP AI + + I +C C LC + CPV+ I+ P Sbjct: 120 CIGCTKCIKACPVDAILGSNQK----------MHTIISDECTGCRLCVDPCPVNCIIMKP 169 Score = 33.9 bits (76), Expect = 6.6, Method: Composition-based stats. Identities = 12/26 (46%), Positives = 14/26 (53%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPN 123 I CI C C +ACPVDAI+ Sbjct: 115 IIEDWCIGCTKCIKACPVDAILGSNQ 140 >gi|254490538|ref|ZP_05103724.1| 4Fe-4S binding domain protein [Methylophaga thiooxidans DMS010] gi|224464282|gb|EEF80545.1| 4Fe-4S binding domain protein [Methylophaga thiooxydans DMS010] Length = 84 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 30/91 (32%), Positives = 39/91 (42%), Gaps = 20/91 (21%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC------GLCQEACP 114 + CI C +CE CP AI+ + Y+ID C C C E CP Sbjct: 7 DECINCDVCEPECPNGAISQGAE-----------IYEIDPDLCTECVGHFDTPQCVEVCP 55 Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLNNG 145 VD I + P+ E ET +LY E L+ G Sbjct: 56 VDCIPKDPDHE---ETHDQLYTKYETLMAVG 83 >gi|219871791|ref|YP_002476166.1| electron transport complex protein RnfB [Haemophilus parasuis SH0165] gi|219691995|gb|ACL33218.1| electron transport complex protein RnfB/NADH:ubiquinone oxidoreductase, subunit RnfB [Haemophilus parasuis SH0165] Length = 202 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 24/79 (30%), Gaps = 10/79 (12%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 E + EE CI C C A CP AI + + + Sbjct: 94 DVPETSGEEPVAKVAYIHEELCIGCTKCIAACPVDAIVGTNK----------AMHTVIAD 143 Query: 102 KCIYCGLCQEACPVDAIVE 120 C C LC CP D I Sbjct: 144 FCTGCELCVAPCPTDCIEM 162 Score = 37.8 bits (86), Expect = 0.57, Method: Composition-based stats. Identities = 14/39 (35%), Positives = 14/39 (35%) Query: 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 P I CI C C ACPVDAIV Sbjct: 96 PETSGEEPVAKVAYIHEELCIGCTKCIAACPVDAIVGTN 134 >gi|229816607|ref|ZP_04446905.1| hypothetical protein COLINT_03665 [Collinsella intestinalis DSM 13280] gi|229807813|gb|EEP43617.1| hypothetical protein COLINT_03665 [Collinsella intestinalis DSM 13280] Length = 410 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 3/63 (4%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV---RYDIDMIKCIYCGLCQEACPV 115 E +CI C+ CE IC A++ + R V ID C+ CG C AC Sbjct: 209 DEAKCIGCRACERICAHGAVSFPTTRERALKNGRVVESPVACIDHDCCVGCGRCIGACNQ 268 Query: 116 DAI 118 +AI Sbjct: 269 NAI 271 >gi|183983397|ref|YP_001851688.1| pyruvate ferredoxin/flavodoxin oxidoreductase family protein [Mycobacterium marinum M] gi|183176723|gb|ACC41833.1| pyruvate ferredoxin/flavodoxin oxidoreductase family protein [Mycobacterium marinum M] Length = 1193 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 27/100 (27%), Gaps = 24/100 (24%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRC--------------HDGTRRTVRY--DIDMI 101 + CI C C +CP I PR RY + Sbjct: 687 WDPDTCIQCGNCSFVCPHSVIRTTLYPRDRLDAAPATFASAPLDAVGLPDTRYTLQVYAE 746 Query: 102 KCIYCGLCQEACP--------VDAIVEGPNFEFATETRQE 133 C C LC EACP AI P R+ Sbjct: 747 DCTGCNLCVEACPAVVPGKPVTKAINLAPREPLVAAAREN 786 >gi|150399681|ref|YP_001323448.1| ferredoxin [Methanococcus vannielii SB] gi|150012384|gb|ABR54836.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus vannielii SB] Length = 170 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 7/104 (6%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPVDAIV- 119 CI C C+ CP AIT++S + Y ID KC+YC C + CPV ++ Sbjct: 52 CIGCSGCKNACPTGAITMKSVKPVKITENYSKEYVPKIDYEKCVYCFYCHDFCPVFSLFN 111 Query: 120 ----EGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 P + +L E+ + D +I + + + Sbjct: 112 EVSPIHPRHVGEEFIKVDLTKLLEKPVEIPDEQLRKIAKILSIN 155 >gi|78485378|ref|YP_391303.1| electron transport complex, RnfABCDGE type, C subunit [Thiomicrospira crunogena XCL-2] gi|78363664|gb|ABB41629.1| NADH oxidoreductase, RnfABCDGE type, C subunit [Thiomicrospira crunogena XCL-2] Length = 704 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 21/66 (31%), Gaps = 2/66 (3%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C C CP + + + + CI CG C CP I Sbjct: 390 CIRCGECMDACPVN-LLPQQLYWHSRSHEFDKVESLKVFDCIECGCCSFVCPSH-IPLVQ 447 Query: 123 NFEFAT 128 + FA Sbjct: 448 YYRFAK 453 >gi|15678874|ref|NP_275991.1| ferredoxin [Methanothermobacter thermautotrophicus str. Delta H] gi|2621946|gb|AAB85352.1| ferredoxin [Methanothermobacter thermautotrophicus str. Delta H] Length = 128 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 29/71 (40%), Gaps = 10/71 (14%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 A+R E+C+ C C ++CP AI IE R KCI C C Sbjct: 66 HPAVRVVKKDREKCMDCGACVSLCPVGAICIEDDWEIVLDDR----------KCIGCSFC 115 Query: 110 QEACPVDAIVE 120 +CP AIV Sbjct: 116 VNSCPTKAIVL 126 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 17/32 (53%) Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 KC+ CG C CPV AI ++E + R+ Sbjct: 77 EKCMDCGACVSLCPVGAICIEDDWEIVLDDRK 108 >gi|325264029|ref|ZP_08130762.1| [Fe] hydrogenase gamma [Clostridium sp. D5] gi|324031067|gb|EGB92349.1| [Fe] hydrogenase gamma [Clostridium sp. D5] Length = 721 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 9/62 (14%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C C +C G T+R + CI+CG C CP D+I E Sbjct: 25 CIKCGQCRRVC---------EDEIGVGKLYTLRSTGEKAICIHCGQCANVCPADSITEVY 75 Query: 123 NF 124 + Sbjct: 76 EY 77 >gi|308069559|ref|YP_003871164.1| pyruvate synthase subunit PORC (pyruvate oxidoreductase gamma chain) [Paenibacillus polymyxa E681] gi|305858838|gb|ADM70626.1| Pyruvate synthase subunit PORC (Pyruvate oxidoreductase gamma chain) [Paenibacillus polymyxa E681] Length = 337 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 27/76 (35%), Gaps = 2/76 (2%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 ++C C C++ICP E G ID C C C + CP Sbjct: 250 EYEADKCTHCAKCDSICPDYCFVWE-EQADKRGRMMPFLQGIDFQYCKGCLKCVDICPSG 308 Query: 117 AIVEGPN-FEFATETR 131 A+ + +A + R Sbjct: 309 ALSSRREQWGWAEQNR 324 >gi|110798895|ref|YP_695767.1| ferredoxin [Clostridium perfringens ATCC 13124] gi|168215287|ref|ZP_02640912.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium perfringens CPE str. F4969] gi|110673542|gb|ABG82529.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium perfringens ATCC 13124] gi|170713321|gb|EDT25503.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium perfringens CPE str. F4969] Length = 273 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 30/70 (42%), Gaps = 11/70 (15%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 N CI CKLCE CP++AI IE+ ID KC CG+C C Sbjct: 210 IVNQNCSVGCIGCKLCEKNCPSKAIRIENNLAI-----------IDYEKCTSCGICVSKC 258 Query: 114 PVDAIVEGPN 123 P AI N Sbjct: 259 PKKAINLRKN 268 Score = 37.8 bits (86), Expect = 0.50, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 5/78 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCIYCGLCQEAC 113 +C+ACK C + CP I I + + + + CI C LC++ C Sbjct: 170 DSSKCVACKACVSACPQNLIDIIKEDQKVIVSCNSNDSGKIVNQNCSVGCIGCKLCEKNC 229 Query: 114 PVDAIVEGPNFEFATETR 131 P AI N + Sbjct: 230 PSKAIRIENNLAIIDYEK 247 >gi|85860894|ref|YP_463096.1| glutamate synthase (NADPH) [Syntrophus aciditrophicus SB] gi|85723985|gb|ABC78928.1| glutamate synthase (NADPH) [Syntrophus aciditrophicus SB] Length = 544 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 15/83 (18%) Query: 58 NGEERCIACKLCEAICPAQAI----------TIESGPRCHDGTRRTVRYDIDMIK----- 102 +E+C C C A+CP QAI +++ G G ++ + I Sbjct: 23 WDKEKCALCGRCTAVCPVQAIEPAVFRKRVVSVQPGLAEKPGHLYSIYHGIRQKTDPAHF 82 Query: 103 CIYCGLCQEACPVDAIVEGPNFE 125 CI CG+C CP AI N E Sbjct: 83 CIGCGMCDFVCPNGAIQPVRNEE 105 Score = 35.5 bits (80), Expect = 2.6, Method: Composition-based stats. Identities = 12/60 (20%), Positives = 21/60 (35%) Query: 28 FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH 87 F+ + P + H +R+ + CI C +C+ +CP AI Sbjct: 48 FRKRVVSVQPGLAEKPGHLYSIYHGIRQKTDPAHFCIGCGMCDFVCPNGAIQPVRNEEQD 107 >gi|73670064|ref|YP_306079.1| formylmethanofuran dehydrogenase subunit F [Methanosarcina barkeri str. Fusaro] gi|72397226|gb|AAZ71499.1| formylmethanofuran dehydrogenase, subunit F [Methanosarcina barkeri str. Fusaro] Length = 486 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 6/77 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR--YDIDMIKCIYCGLCQEACPVD 116 E+C C++C +CP AIT E+ D R + KC+ C LC+ ACP D Sbjct: 126 DLEKCTFCRMCSNLCPVHAITFEAVGEVPDEKRYPKYDAFVNINEKCLPCALCEGACPQD 185 Query: 117 AIVEGPNFEFATETRQE 133 AI EF ++E Sbjct: 186 AI----EVEFTFPKKEE 198 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 1/79 (1%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 ++ +RC C +C ICP +A+ + G +D+ KC +C +C Sbjct: 81 IKTLDYDYKRCNGCGICADICPTKALEMGPLHEIATGLDAPAVM-MDLEKCTFCRMCSNL 139 Query: 113 CPVDAIVEGPNFEFATETR 131 CPV AI E E R Sbjct: 140 CPVHAITFEAVGEVPDEKR 158 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 35/87 (40%), Gaps = 4/87 (4%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E+ T L + +C C LC+ +CP +AI G R + + + Sbjct: 234 EREPTPDNPVPFEQLLVDED---KCDYCVLCQDLCPEEAIK-VKGERPCEAPKVEGNVKV 289 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFE 125 D +KC C C+ CP +AI E Sbjct: 290 DELKCTQCARCKTVCPYEAIDLQKPME 316 Score = 41.2 bits (95), Expect = 0.050, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 31/87 (35%), Gaps = 7/87 (8%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T E GE + E+C C +C C A + D Sbjct: 191 FTFPKKEEIAPLKEGAEGEIEI-----DTEKCNFCGICARFC--DAFILLEREPTPDNPV 243 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAI 118 + +D KC YC LCQ+ CP +AI Sbjct: 244 PFEQLLVDEDKCDYCVLCQDLCPEEAI 270 Score = 38.5 bits (88), Expect = 0.34, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 31/83 (37%), Gaps = 6/83 (7%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P+E GE L E C+ C +CP++ + + P Sbjct: 304 CPYEAIDLQKPMEGELNLIETNLKECDPQGCRGCFNVCPSKLWYVPTDPEDPRKIAFKED 363 Query: 96 YDIDMIKCIYCGLCQEACPVDAI 118 + C YCG C +AC +DAI Sbjct: 364 F------CTYCGACVKACHLDAI 380 Score = 37.0 bits (84), Expect = 0.80, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 29/88 (32%), Gaps = 6/88 (6%) Query: 31 KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE-----SGPR 85 G R + N E+C+ C LCE CP AI +E Sbjct: 141 PVHAITFEAVGEVPDEKR-YPKYDAFVNINEKCLPCALCEGACPQDAIEVEFTFPKKEEI 199 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 +ID KC +CG+C C Sbjct: 200 APLKEGAEGEIEIDTEKCNFCGICARFC 227 >gi|134300070|ref|YP_001113566.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfotomaculum reducens MI-1] gi|134052770|gb|ABO50741.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Desulfotomaculum reducens MI-1] Length = 272 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 36/107 (33%), Gaps = 23/107 (21%) Query: 37 PFEKGSTSPRFRGEHALRRY--PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 P+ K G R P CI CKLC +CP +I E + + Sbjct: 174 PYRKYYKPENENGTPVDIRKVTPKTNSNCIDCKLCVNLCPMGSIDYEDVSKLN------- 226 Query: 95 RYDIDMIKCIYCGLCQEACPVDA--------IVEGPNFEFATETRQE 133 CI CG C + CP +A + E +R+E Sbjct: 227 ------GICIKCGACIKNCPTEAKYYDDKDYLRHKHELEVDFASRRE 267 >gi|83855177|ref|ZP_00948707.1| formate dehydrogenase, alpha subunit [Sulfitobacter sp. NAS-14.1] gi|83843020|gb|EAP82187.1| formate dehydrogenase, alpha subunit [Sulfitobacter sp. NAS-14.1] Length = 922 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 5/65 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID----MIKCIYCGLCQEACP 114 + CI C LC C + + G +D+ C+ CG C +ACP Sbjct: 147 NLDACIQCNLCVRACR-EVQVNDVIGMAGRGHDSYPVFDMADPMGASSCVACGECVQACP 205 Query: 115 VDAIV 119 A++ Sbjct: 206 TGALM 210 >gi|83941699|ref|ZP_00954161.1| formate dehydrogenase, alpha subunit [Sulfitobacter sp. EE-36] gi|83847519|gb|EAP85394.1| formate dehydrogenase, alpha subunit [Sulfitobacter sp. EE-36] Length = 922 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 5/65 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID----MIKCIYCGLCQEACP 114 + CI C LC C + + G +D+ C+ CG C +ACP Sbjct: 147 NLDACIQCNLCVRACR-EVQVNDVIGMAGRGHDSYPVFDMADPMGASSCVACGECVQACP 205 Query: 115 VDAIV 119 A++ Sbjct: 206 TGALM 210 >gi|317499788|ref|ZP_07958040.1| 4Fe-4S binding domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316892928|gb|EFV15158.1| 4Fe-4S binding domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 254 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 12/88 (13%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 + + +R + + P +C +C +C CPA AI+ + Sbjct: 159 VELPGNHNYREYNGVPLKPVANGKCTSCGICAKECPAGAISKDDPKVTDK---------- 208 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEF 126 KCI C C CP A E Sbjct: 209 --EKCISCMHCVAVCPQKARHCNKVMEL 234 >gi|295103163|emb|CBL00707.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Faecalibacterium prausnitzii SL3/3] Length = 395 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 6/55 (10%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 C C CE ICP I + + ++ KCI CGLC++ CP Sbjct: 9 SECCGCTACEQICPRNCIQMRKNEEG------FLYPVVNNDKCIKCGLCEKVCPF 57 >gi|289191766|ref|YP_003457707.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus sp. FS406-22] gi|288938216|gb|ADC68971.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus sp. FS406-22] Length = 260 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 30/71 (42%), Gaps = 10/71 (14%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 + L+RY E CI C +C CP AI + R ++++ C+ CG Sbjct: 127 HRKIRLKRYELDENTCIKCGICARFCPTNAIKVV----------RRKSIEVNLDLCMGCG 176 Query: 108 LCQEACPVDAI 118 C E CP I Sbjct: 177 ACAEVCPKKCI 187 Score = 40.9 bits (94), Expect = 0.055, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 15/73 (20%) Query: 61 ERCIACKLCEAICPAQA---------------ITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++C+ C++C CP A R RY++D CI Sbjct: 85 DKCVKCEICAQTCPVGAIYVIEGRAEIEDSEVHYTIKEKSIPHRKIRLKRYELDENTCIK 144 Query: 106 CGLCQEACPVDAI 118 CG+C CP +AI Sbjct: 145 CGICARFCPTNAI 157 Score = 40.9 bits (94), Expect = 0.060, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 11/67 (16%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 R + C+ C +C CP AI E I+ KCI CG C + C Sbjct: 200 RDIEVDKNLCVGCFVCVEECPINAIEQEGDKV-----------KINKDKCILCGRCADVC 248 Query: 114 PVDAIVE 120 P +AI Sbjct: 249 PANAIKI 255 Score = 38.9 bits (89), Expect = 0.21, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 9/63 (14%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E +CI C LC CP AI + I KC+ C +C + CPV Sbjct: 50 YINETKCIRCNLCYKECPVDAIEKAKVKKSA---------KIIEDKCVKCEICAQTCPVG 100 Query: 117 AIV 119 AI Sbjct: 101 AIY 103 >gi|330864198|emb|CBX74259.1| electron transport complex protein rnfB [Yersinia enterocolitica W22703] Length = 126 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 24/78 (30%), Gaps = 10/78 (12%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C C CP AI + + + C C LC CP D Sbjct: 30 FIDEANCIGCTKCIQACPVDAIVGAT----------RAMHTVLPDLCTGCDLCVSPCPTD 79 Query: 117 AIVEGPNFEFATETRQEL 134 I P + +L Sbjct: 80 CIEMIPVATTTANWKWDL 97 >gi|325291003|ref|YP_004267184.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Syntrophobotulus glycolicus DSM 8271] gi|324966404|gb|ADY57183.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Syntrophobotulus glycolicus DSM 8271] Length = 577 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 29/71 (40%), Gaps = 3/71 (4%) Query: 59 GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMI--KCIYCGLCQEACPV 115 +C+ C C ++C Q + T T Y+ + CI CG C + CPV Sbjct: 143 DTSKCVLCGRCVSVCSSVQNVDAIDFAHRGPQTSVTTPYEEKLTARNCINCGQCIKVCPV 202 Query: 116 DAIVEGPNFEF 126 A+ E + + Sbjct: 203 GALSERDDTDL 213 >gi|323703107|ref|ZP_08114761.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Desulfotomaculum nigrificans DSM 574] gi|323531884|gb|EGB21769.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Desulfotomaculum nigrificans DSM 574] Length = 709 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 18/56 (32%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CIAC C C + + KCI CG C CP AI Sbjct: 586 CIACGQCVDSCHNRVGAAALQLGYIKDAHGETDFARPGDKCIGCGTCSVNCPTGAI 641 >gi|284047493|ref|YP_003397832.1| Fe-S cluster domain protein [Acidaminococcus fermentans DSM 20731] gi|283951714|gb|ADB46517.1| Fe-S cluster domain protein [Acidaminococcus fermentans DSM 20731] Length = 305 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 7/85 (8%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93 P +K E + + CI+C +C CP QAIT+E P Sbjct: 189 EMIPADKKVLVQCNNREKGKAAMTDCKVSCISCGICVKTCPKQAITLEDTPNGSIP---- 244 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAI 118 ID KC+ CGLC CP + Sbjct: 245 ---VIDYDKCVGCGLCTMKCPRKCL 266 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 26/69 (37%), Gaps = 5/69 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQEAC 113 +C++C C CP I + + ++ + + CI CG+C + C Sbjct: 169 DYNKCVSCGACSKACPQLLIEMIPADKKVLVQCNNREKGKAAMTDCKVSCISCGICVKTC 228 Query: 114 PVDAIVEGP 122 P AI Sbjct: 229 PKQAITLED 237 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 19/60 (31%), Gaps = 10/60 (16%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C C A+ I D KC+ CG C +ACP I P Sbjct: 143 CFGDGACVDACNFGALKIGENGLPEF----------DYNKCVSCGACSKACPQLLIEMIP 192 >gi|260892082|ref|YP_003238179.1| NADH dehydrogenase (quinone) [Ammonifex degensii KC4] gi|260864223|gb|ACX51329.1| NADH dehydrogenase (quinone) [Ammonifex degensii KC4] Length = 626 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 30/68 (44%), Gaps = 10/68 (14%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 ALRR+ E+CI C C +CP +AI E H ID C+ CG C Sbjct: 566 MALRRFVILAEKCIGCGACAYVCPVKAIKGEKKKPHH----------IDEKVCVKCGRCF 615 Query: 111 EACPVDAI 118 E C A+ Sbjct: 616 EICRFQAV 623 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 15/41 (36%) Query: 78 ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + R+ I KCI CG C CPV AI Sbjct: 553 QHVTERRCSAGECMALRRFVILAEKCIGCGACAYVCPVKAI 593 >gi|257791490|ref|YP_003182096.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Eggerthella lenta DSM 2243] gi|257475387|gb|ACV55707.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella lenta DSM 2243] Length = 298 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 23/73 (31%), Gaps = 7/73 (9%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G CI C C+ C + +E D R C+ CG Sbjct: 219 GRFGQVNVKIDPAACIHCDACKHACLSDPAILEPALDGCDAIVR-------AGDCMACGS 271 Query: 109 CQEACPVDAIVEG 121 C +ACP A+ Sbjct: 272 CIDACPTRALSFT 284 >gi|227498965|ref|ZP_03929102.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|226904414|gb|EEH90332.1| conserved hypothetical protein [Acidaminococcus sp. D21] Length = 580 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 26/94 (27%), Gaps = 5/94 (5%) Query: 34 INYPFEKGSTSPRFRG-EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 I+ P+E+ RG ++CI C C +C Sbjct: 119 ISLPYER-ELPKGARGAWTTTYPLYRDYQKCIKCMRCIQVCDKMQTVHIWDVDGTGSRTT 177 Query: 93 TVRYD---IDMIKCIYCGLCQEACPVDAIVEGPN 123 I C CG C CP + E + Sbjct: 178 VDVSHNRVIKDSDCTLCGQCITHCPTAGLRERDD 211 >gi|254448470|ref|ZP_05061930.1| electron transport complex, rnfaBcdge type, b subunit [gamma proteobacterium HTCC5015] gi|198261853|gb|EDY86138.1| electron transport complex, rnfaBcdge type, b subunit [gamma proteobacterium HTCC5015] Length = 200 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 26/85 (30%), Gaps = 13/85 (15%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E R G CI C LC CP AI + + + Sbjct: 96 EPKPLDAEERPPSVAVIEEEG---CIGCTLCIQACPVDAILGAAKQ----------MHTV 142 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPN 123 +C C LC E CPVD I Sbjct: 143 ITDECTGCELCVEPCPVDVITMEDI 167 >gi|160932076|ref|ZP_02079467.1| hypothetical protein CLOLEP_00910 [Clostridium leptum DSM 753] gi|156868678|gb|EDO62050.1| hypothetical protein CLOLEP_00910 [Clostridium leptum DSM 753] Length = 501 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 32/84 (38%), Gaps = 16/84 (19%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +RC+ C++CE C +A + + D KC+ C C CP A+ Sbjct: 15 NYDRCVGCRVCERQCANEAHYFDEAA---------GKMMADESKCVNCHRCVSLCPTRAL 65 Query: 119 VEGP-------NFEFATETRQELY 135 N+ + E QE+Y Sbjct: 66 KIVKTDHTFKENYNWTGEAIQEIY 89 >gi|146304202|ref|YP_001191518.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Metallosphaera sedula DSM 5348] gi|145702452|gb|ABP95594.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Metallosphaera sedula DSM 5348] Length = 103 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 2/64 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CIA C CP P ++ ++ CI+C C CPV AI Sbjct: 41 DFDICIADGSCITACPVNVFQWFDTPGNPVSEKKADP--VNENACIFCMACVNVCPVAAI 98 Query: 119 VEGP 122 P Sbjct: 99 DVKP 102 >gi|157962176|ref|YP_001502210.1| electron transport complex protein RnfC [Shewanella pealeana ATCC 700345] gi|157847176|gb|ABV87675.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella pealeana ATCC 700345] Length = 825 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 38/102 (37%), Gaps = 17/102 (16%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACPVD 116 + CI C C +CP+ P+ + YD ++ CI CG C CP Sbjct: 378 KPCIRCGECAVVCPS-----LLLPQQLFWHAKAEEYDKASSFNLHDCIECGCCSFVCP-S 431 Query: 117 AIVEGPNFEFA-------TETRQELYYDKERLLNNGDRWESE 151 I + A TE +++ + K+R R E E Sbjct: 432 DIPLVEYYRIAKSAIRTQTEEKKQADFAKQRFEARLQRLEEE 473 >gi|16082454|ref|NP_394943.1| putative ATPase RIL [Thermoplasma acidophilum DSM 1728] gi|10640832|emb|CAC12610.1| probable RNase L inhibitor [Thermoplasma acidophilum] Length = 589 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 1/62 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++C K C C + + D + I CI CG+C CP AI Sbjct: 7 DRDKCHP-KKCHHECQYYCPPVRNHVMAIDFPDPDGQPLISETLCIGCGICIRRCPFGAI 65 Query: 119 VE 120 Sbjct: 66 KI 67 >gi|329115317|ref|ZP_08244071.1| Putative pyruvate-flavodoxin oxidoreductase [Acetobacter pomorum DM001] gi|326695296|gb|EGE46983.1| Putative pyruvate-flavodoxin oxidoreductase [Acetobacter pomorum DM001] Length = 1209 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 24/87 (27%), Gaps = 23/87 (26%) Query: 58 NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY--DIDMI 101 + CI C C +CP A + R+ + Sbjct: 707 WNPDTCIQCGQCSIVCPHSVIRAKTYEDKDLTGAPASFKSAPVNARGYPDARFTLQFYVE 766 Query: 102 KCIYCGLCQEACP-------VDAIVEG 121 C CG+C E CP AI G Sbjct: 767 DCTGCGVCVENCPEISPDGKTRAINMG 793 >gi|320101426|ref|YP_004177018.1| ABC transporter-like protein [Desulfurococcus mucosus DSM 2162] gi|319753778|gb|ADV65536.1| ABC transporter related protein [Desulfurococcus mucosus DSM 2162] Length = 602 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 20/67 (29%), Gaps = 6/67 (8%) Query: 59 GEERCIACKL---CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 C K C CP + + V I CI CG+C + CP Sbjct: 8 DRNYCKPDKCSLECIRFCPVNRGRRKKAIELSGDNKYVV---ISEDACIGCGICVKKCPF 64 Query: 116 DAIVEGP 122 AI Sbjct: 65 HAISIVN 71 >gi|269986447|gb|EEZ92733.1| ABC transporter related protein [Candidatus Parvarchaeum acidiphilum ARMAN-4] Length = 572 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 26/70 (37%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 +R E C A C IC + G + R + I CI CG+C + Sbjct: 1 MRIAVIKETECEAPDNCNYICAEVCPRVRQGAKETVYARENGKAAITESLCISCGICVKR 60 Query: 113 CPVDAIVEGP 122 CP DAI Sbjct: 61 CPFDAIRIIN 70 >gi|256544556|ref|ZP_05471929.1| NAD-dependent formate dehydrogenase, alpha subunit [Anaerococcus vaginalis ATCC 51170] gi|256399881|gb|EEU13485.1| NAD-dependent formate dehydrogenase, alpha subunit [Anaerococcus vaginalis ATCC 51170] Length = 898 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 29/75 (38%), Gaps = 3/75 (4%) Query: 54 RRYPNGEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDIDMI--KCIYCGLCQ 110 + Y +CI C +C ++C Q S T D + C+ CG C Sbjct: 136 KFYSYDPNKCIKCGICVSVCNNLQNSNAISFVDRGFDTYIGTPMDKGLGSCDCVSCGNCV 195 Query: 111 EACPVDAIVEGPNFE 125 ACPV A+ +E Sbjct: 196 SACPVGALNPKKKYE 210 Score = 34.3 bits (77), Expect = 5.5, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 23/80 (28%), Gaps = 5/80 (6%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTRRT 93 EK R + +PN C C+ + + + Sbjct: 76 EKIMKMRREILDLLFSNHPNDCLSCDKSGKCKLQNYCYEYGISEGSFKREIKDLPIDFSN 135 Query: 94 VRYDIDMIKCIYCGLCQEAC 113 Y D KCI CG+C C Sbjct: 136 KFYSYDPNKCIKCGICVSVC 155 >gi|256810211|ref|YP_003127580.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus fervens AG86] gi|256793411|gb|ACV24080.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus fervens AG86] Length = 390 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 1/65 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + +CI C +C CP AI +G + + ++ KCIYC C E CP D I Sbjct: 164 DKSKCIYCSICAQTCPWNAIY-VAGRIPKKRRKEVKSFKVEAEKCIYCLKCVEVCPGDMI 222 Query: 119 VEGPN 123 Sbjct: 223 KVDNE 227 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 3/73 (4%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 + + C C C +CP A+ + R + KC CG C EACPV Sbjct: 26 DIDNFKVCNLCMQCVNVCPNGALV---EEEVEINGKTVKRVNYLAHKCEKCGNCAEACPV 82 Query: 116 DAIVEGPNFEFAT 128 F ++ Sbjct: 83 GIKKVDDEFPYSK 95 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 3/63 (4%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C CP A+ + + + R + C CG C E CP+ + Sbjct: 301 KMCIVCGACTVACPTGALKL---GKIEHNGKEYNRIEFSPYLCDKCGKCVEVCPMKTLKL 357 Query: 121 GPN 123 + Sbjct: 358 ADD 360 Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 1/69 (1%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI-DMIKCIYCGLCQEACP 114 +P + C+ C+ C +CP + I++ + + I C+ CG+C CP Sbjct: 91 FPYSKGHCVLCQKCIDVCPIEIISLPGIIDKPRREVKAPKDPIAVTDACVGCGVCVPECP 150 Query: 115 VDAIVEGPN 123 V+AI N Sbjct: 151 VNAISIEDN 159 Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 11/80 (13%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 G R A + + C+ C +C CP AI+IE ID Sbjct: 116 PGIIDKPRREVKAPKDPIAVTDACVGCGVCVPECPVNAISIEDNKAV-----------ID 164 Query: 100 MIKCIYCGLCQEACPVDAIV 119 KCIYC +C + CP +AI Sbjct: 165 KSKCIYCSICAQTCPWNAIY 184 >gi|237722563|ref|ZP_04553044.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|294646004|ref|ZP_06723670.1| 4Fe-4S binding domain protein [Bacteroides ovatus SD CC 2a] gi|294809334|ref|ZP_06768044.1| 4Fe-4S binding domain protein [Bacteroides xylanisolvens SD CC 1b] gi|229448373|gb|EEO54164.1| conserved hypothetical protein [Bacteroides sp. 2_2_4] gi|292638687|gb|EFF57039.1| 4Fe-4S binding domain protein [Bacteroides ovatus SD CC 2a] gi|294443426|gb|EFG12183.1| 4Fe-4S binding domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 600 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 8/69 (11%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C C +C +AIT ++ KCI CGLC++ CP+ I Sbjct: 6 DKSECCGCNACGDVCTHEAITFQTDIEGFWYPVVDK------DKCIDCGLCEKVCPIINI 59 Query: 119 V--EGPNFE 125 + +FE Sbjct: 60 DVLKKNDFE 68 >gi|167629826|ref|YP_001680325.1| proton-translocating NADH-ubiquinone oxidoreductase, chain f [Heliobacterium modesticaldum Ice1] gi|167592566|gb|ABZ84314.1| proton-translocating NADH-ubiquinone oxidoreductase, chain f [Heliobacterium modesticaldum Ice1] Length = 659 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 36/97 (37%), Gaps = 15/97 (15%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 LRY F+ + + ++ AL Y ++C C LC CP IT + Sbjct: 575 TTLRY-FRDEYEAHIHDQRCPAGRC----AALLTYRIDADKCRGCTLCARRCPVGCITGK 629 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 Y ID +CI CG C E C A+ Sbjct: 630 PREA----------YAIDETRCIKCGACLECCKFGAV 656 Score = 38.2 bits (87), Expect = 0.44, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 20/54 (37%), Gaps = 1/54 (1%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA-TETR 131 I + Y ID KC C LC CPV I P +A ETR Sbjct: 587 HIHDQRCPAGRCAALLTYRIDADKCRGCTLCARRCPVGCITGKPREAYAIDETR 640 >gi|332983171|ref|YP_004464612.1| indolepyruvate ferredoxin oxidoreductase subunit alpha [Mahella australiensis 50-1 BON] gi|332700849|gb|AEE97790.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Mahella australiensis 50-1 BON] Length = 608 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 21/65 (32%), Gaps = 12/65 (18%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + Y E+ C C C A+ + C CGLC + C Sbjct: 550 KHYTVDEQICTLCNYCVEQLGCPALFVIDDMPA------------IQSTCAGCGLCAQIC 597 Query: 114 PVDAI 118 PV AI Sbjct: 598 PVGAI 602 >gi|317126171|ref|YP_004100283.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Intrasporangium calvum DSM 43043] gi|315590259|gb|ADU49556.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Intrasporangium calvum DSM 43043] Length = 1201 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 23/75 (30%), Gaps = 16/75 (21%) Query: 57 PNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY--DIDM 100 + CI C C +CP A + RY + + Sbjct: 698 QWDPDSCIQCGNCAFVCPHSVIRSKYYDPDVLIDAPGAFPSAPLNAAGLPGSRYTLQVYV 757 Query: 101 IKCIYCGLCQEACPV 115 C CGLC + CPV Sbjct: 758 EDCTGCGLCVDTCPV 772 Score = 35.5 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 8/19 (42%), Positives = 8/19 (42%) Query: 100 MIKCIYCGLCQEACPVDAI 118 CI CG C CP I Sbjct: 701 PDSCIQCGNCAFVCPHSVI 719 >gi|284999078|ref|YP_003420846.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Sulfolobus islandicus L.D.8.5] gi|284446974|gb|ADB88476.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Sulfolobus islandicus L.D.8.5] Length = 94 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 26/75 (34%), Gaps = 11/75 (14%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G + + +CI CK+C CP I + +D C CG+ Sbjct: 30 GAWRIVKPVVDYNKCIGCKVCFMFCPESTIVPSNDKV-----------RVDYEYCKGCGV 78 Query: 109 CQEACPVDAIVEGPN 123 C CPV AI Sbjct: 79 CANVCPVKAISMVNE 93 >gi|260598065|ref|YP_003210636.1| putative pyruvate-flavodoxin oxidoreductase [Cronobacter turicensis z3032] gi|260217242|emb|CBA31152.1| Probable pyruvate-flavodoxin oxidoreductase [Cronobacter turicensis z3032] Length = 1173 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 34/144 (23%), Gaps = 32/144 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPLGTTQWEKRNIAEAIPIWKEELCTQCNHCVAAC 699 Query: 74 PA--------------QAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPV-- 115 P A + R +Y + C C LC E CP Sbjct: 700 PHSAIRAKVVAPEALADAPGSLAALDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETRQE 133 AI E E ++ Sbjct: 760 RQNPEIKAINMMSRLEHVEEEKRN 783 >gi|257125175|ref|YP_003163289.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Leptotrichia buccalis C-1013-b] gi|257049114|gb|ACV38298.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Leptotrichia buccalis C-1013-b] Length = 1189 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 34/107 (31%), Gaps = 22/107 (20%) Query: 57 PNGEERCIACKLCEAIC--------------PAQAITIESGPRCHDGTRRTVRYDID--M 100 + CI C C +C A+A + + Y I Sbjct: 686 EWQPDMCIQCNQCAYVCPHAVIRPFLIDEEEMAKAPEGMPTIKALGRGMNDLNYKIQVSP 745 Query: 101 IKCIYCGLCQEACPVD---AIVEGPNFEFATETRQELYYDKERLLNN 144 + C C C + CP AIV P + R E+ Y + L NN Sbjct: 746 LDCTGCSACVDVCPAPRGKAIVMKPI--QSQIERNEVEYT-DYLFNN 789 >gi|288941460|ref|YP_003443700.1| cobyrinic acid ac-diamide synthase [Allochromatium vinosum DSM 180] gi|288896832|gb|ADC62668.1| Cobyrinic acid ac-diamide synthase [Allochromatium vinosum DSM 180] Length = 301 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 11/65 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C CEA C +A+ G R+ +D I C CG C + CP +A+ Sbjct: 69 DRDTCSDCGACEAACRYEALAQIDG-----------RWQVDPIACEGCGACLDRCPSEAL 117 Query: 119 VEGPN 123 P Sbjct: 118 SLVPQ 122 >gi|217968856|ref|YP_002354090.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thauera sp. MZ1T] gi|217506183|gb|ACK53194.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thauera sp. MZ1T] Length = 117 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 28/85 (32%), Positives = 34/85 (40%), Gaps = 15/85 (17%) Query: 55 RYPNGEERCIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 E CI CK C ++CP A ID +CI C LC Sbjct: 1 MTHVVTEACIRCKYTDCVSMCPVDAFREGPN-----------FLVIDPEECIDCTLCVAE 49 Query: 113 CPVDAIVEGPNFEFATETRQELYYD 137 CPVDAIV P E + E R+ L + Sbjct: 50 CPVDAIV--PEDELSDEQREYLALN 72 >gi|188585285|ref|YP_001916830.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349972|gb|ACB84242.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 374 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 3/62 (4%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C LC C A+TI + G + + KC CG+C+ ACPVDAI + Sbjct: 262 PDCYGCGLCAKSCDFGALTINT---WGSGESKQIVIQHSPWKCFDCGICKLACPVDAIKK 318 Query: 121 GP 122 Sbjct: 319 TK 320 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 12/70 (17%) Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 C C +ICP +AI+I+ I CI C +C CP AI + +F Sbjct: 33 NCNKCASICPREAISIQGA-----------FPSILRKNCIGCHICVRQCPNGAIYQT-DF 80 Query: 125 EFATETRQEL 134 ++ + R+ L Sbjct: 81 DYYRKYREIL 90 >gi|150403238|ref|YP_001330532.1| thiamine pyrophosphate binding domain-containing protein [Methanococcus maripaludis C7] gi|150034268|gb|ABR66381.1| thiamine pyrophosphate protein domain protein TPP-binding [Methanococcus maripaludis C7] Length = 612 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 12/65 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + +C CK+C AIT+ M C CGLC CPVDAI Sbjct: 559 NKNKCTGCKICVERLGCPAITLNGDIPE------------IMENCTGCGLCMAVCPVDAI 606 Query: 119 VEGPN 123 E Sbjct: 607 KEVDE 611 >gi|2072168|gb|AAB53702.1| hydrogenase diaphorase subunit [Prochlorothrix hollandica] Length = 145 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 4/69 (5%) Query: 55 RYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLCQ 110 ++ RCI C C +C A + R + + C CG C Sbjct: 47 QFGIDHNRCILCTRCVRVCDEIEGAHVWDVAQRGEHCYIVSGMDQPWGTVDACTSCGKCV 106 Query: 111 EACPVDAIV 119 +ACP AI Sbjct: 107 DACPTGAIF 115 >gi|322515042|ref|ZP_08068050.1| electron transport complex protein RnfB [Actinobacillus ureae ATCC 25976] gi|322118922|gb|EFX91099.1| electron transport complex protein RnfB [Actinobacillus ureae ATCC 25976] Length = 206 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 21/62 (33%), Gaps = 10/62 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ CI C C CP AI + + I C C LC CP + I Sbjct: 112 HEDMCIGCTKCIQACPVDAIIGTNK----------AMHTIIADLCTGCELCVAPCPTNCI 161 Query: 119 VE 120 Sbjct: 162 EM 163 Score = 35.8 bits (81), Expect = 1.7, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 14/25 (56%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 + CI C C +ACPVDAI+ Sbjct: 111 VHEDMCIGCTKCIQACPVDAIIGTN 135 >gi|302336899|ref|YP_003802105.1| hydrogenase, Fe-only [Spirochaeta smaragdinae DSM 11293] gi|301634084|gb|ADK79511.1| hydrogenase, Fe-only [Spirochaeta smaragdinae DSM 11293] Length = 671 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 21/64 (32%), Gaps = 5/64 (7%) Query: 59 GEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 +C+ C C C AI T R I + CI CG C CP Sbjct: 142 DPNKCVLCGDCVRYCHEIQGIGAIDFAFRGEHVQVTPAFGR-SIGEVDCINCGQCAAVCP 200 Query: 115 VDAI 118 AI Sbjct: 201 TGAI 204 >gi|261821595|ref|YP_003259701.1| electron transport complex protein RnfB [Pectobacterium wasabiae WPP163] gi|261605608|gb|ACX88094.1| electron transport complex, RnfABCDGE type, B subunit [Pectobacterium wasabiae WPP163] Length = 192 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 22/73 (30%), Gaps = 10/73 (13%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 A E CI C C CP AI + + + C C LC Sbjct: 105 PARHVAWIDESNCIGCTKCIQACPVDAIIGSTK----------AVHTVVSDLCTGCDLCV 154 Query: 111 EACPVDAIVEGPN 123 CP D I P Sbjct: 155 SPCPTDCIELRPI 167 >gi|113970402|ref|YP_734195.1| electron transport complex protein RnfB [Shewanella sp. MR-4] gi|123324999|sp|Q0HIH9|RNFB_SHESM RecName: Full=Electron transport complex protein rnfB gi|113885086|gb|ABI39138.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella sp. MR-4] Length = 193 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 25/72 (34%), Gaps = 10/72 (13%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + E+ CI C C CP AI + + + C C LC Sbjct: 102 QVKKVAYIREDECIGCTKCIQACPVDAIIGAGK----------LMHTVLTADCTGCDLCV 151 Query: 111 EACPVDAIVEGP 122 E CPVD I P Sbjct: 152 EPCPVDCIDMLP 163 >gi|107023146|ref|YP_621473.1| dihydropyrimidine dehydrogenase [Burkholderia cenocepacia AU 1054] gi|116686614|ref|YP_839861.1| dihydropyrimidine dehydrogenase [Burkholderia cenocepacia HI2424] gi|105893335|gb|ABF76500.1| dihydroorotate oxidase B, catalytic subunit [Burkholderia cenocepacia AU 1054] gi|116652329|gb|ABK12968.1| dihydropyrimidine dehydrogenase (NADP+) [Burkholderia cenocepacia HI2424] Length = 437 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 6/63 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117 ++RCI C LC C + ++ DG R +++ +C+ C LC CPV Sbjct: 341 DQDRCIQCGLCHIACED--TSHQAITATKDGAR---HFEVVDSECVGCNLCMHVCPVEQC 395 Query: 118 IVE 120 I Sbjct: 396 ITM 398 >gi|53728862|ref|ZP_00348260.1| COG2878: Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|165975622|ref|YP_001651215.1| electron transport complex protein RnfB [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|303250915|ref|ZP_07337106.1| electron transport complex protein RnfB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|303251990|ref|ZP_07338161.1| electron transport complex protein RnfB [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307244978|ref|ZP_07527075.1| Electron transport complex protein rnfB [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307247152|ref|ZP_07529204.1| Electron transport complex protein rnfB [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|307249376|ref|ZP_07531369.1| Electron transport complex protein rnfB [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307251696|ref|ZP_07533601.1| Electron transport complex protein rnfB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307253931|ref|ZP_07535783.1| Electron transport complex protein rnfB [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258385|ref|ZP_07540126.1| Electron transport complex protein rnfB [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|307260624|ref|ZP_07542316.1| Electron transport complex protein rnfB [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|165875723|gb|ABY68771.1| putative ferredoxin II, iron sulfur protein [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|302649420|gb|EFL79605.1| electron transport complex protein RnfB [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302650221|gb|EFL80386.1| electron transport complex protein RnfB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306854143|gb|EFM86351.1| Electron transport complex protein rnfB [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306856401|gb|EFM88552.1| Electron transport complex protein rnfB [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306858598|gb|EFM90661.1| Electron transport complex protein rnfB [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306860893|gb|EFM92901.1| Electron transport complex protein rnfB [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306863135|gb|EFM95077.1| Electron transport complex protein rnfB [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867569|gb|EFM99416.1| Electron transport complex protein rnfB [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306869701|gb|EFN01486.1| Electron transport complex protein rnfB [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 203 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 21/65 (32%), Gaps = 10/65 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ CI C C CP AI + + + C C LC CP + I Sbjct: 112 HEDMCIGCTKCIQACPVDAIIGTNK----------AMHTVIPDLCTGCELCVAPCPTNCI 161 Query: 119 VEGPN 123 Sbjct: 162 EMVKQ 166 Score = 38.2 bits (87), Expect = 0.38, Method: Composition-based stats. Identities = 12/25 (48%), Positives = 14/25 (56%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 I CI C C +ACPVDAI+ Sbjct: 111 IHEDMCIGCTKCIQACPVDAIIGTN 135 >gi|329914674|ref|ZP_08276144.1| Iron-sulfur cluster-binding protein [Oxalobacteraceae bacterium IMCC9480] gi|327545089|gb|EGF30386.1| Iron-sulfur cluster-binding protein [Oxalobacteraceae bacterium IMCC9480] Length = 547 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 25/81 (30%), Gaps = 9/81 (11%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 C C C CP A+ + + C+ CGLC+ CP + Sbjct: 409 NINTSACTLCMSCVGACPESALMDNADLPQLRFVEKN---------CVQCGLCETTCPEN 459 Query: 117 AIVEGPNFEFATETRQELYYD 137 AI P +Q + Sbjct: 460 AITLTPRLLLTDVAKQSRVLN 480 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 11/55 (20%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 I C C +C A AI + + C+ CG C CP A+ Sbjct: 169 IGCTSCIDVCSADAIRHDGN-----------LVKVVPNLCVGCGACTTVCPSGAL 212 Score = 37.4 bits (85), Expect = 0.70, Method: Composition-based stats. Identities = 11/36 (30%), Positives = 14/36 (38%) Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 R ID+ C C C +ACP AI + Sbjct: 36 RWQQSNPIDLEICTRCNACVDACPEQAIDLMYQIDL 71 Score = 33.5 bits (75), Expect = 8.6, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 14/60 (23%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + P E C C C CP QAI + Y ID+ KC C +AC Sbjct: 39 QSNPIDLEICTRCNACVDACPEQAID--------------LMYQIDLNKCTSHSDCVKAC 84 >gi|251792841|ref|YP_003007567.1| electron transport complex protein RnfB [Aggregatibacter aphrophilus NJ8700] gi|247534234|gb|ACS97480.1| electron transport complex protein RnfB [Aggregatibacter aphrophilus NJ8700] Length = 197 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 25/82 (30%), Gaps = 10/82 (12%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 + + + A + E+ CI C C CP AI + + I Sbjct: 90 VEPPETEDLAEDPAPKVAFIHEDMCIGCTKCIQACPVDAIIGSNK----------AMHTI 139 Query: 99 DMIKCIYCGLCQEACPVDAIVE 120 C C LC CP I Sbjct: 140 IPDLCTGCELCVAPCPTSCISM 161 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 12/25 (48%), Positives = 14/25 (56%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 I CI C C +ACPVDAI+ Sbjct: 109 IHEDMCIGCTKCIQACPVDAIIGSN 133 >gi|254511850|ref|ZP_05123917.1| formate dehydrogenase, alpha subunit [Rhodobacteraceae bacterium KLH11] gi|221535561|gb|EEE38549.1| formate dehydrogenase, alpha subunit [Rhodobacteraceae bacterium KLH11] Length = 927 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 28/85 (32%), Gaps = 10/85 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD- 97 EK + CI C LC C + + G V +D Sbjct: 135 EKIPLLDDSHVAMRVNLD-----ACINCNLCVRACR-EVQVNDVIGMAGRGHTSQVVFDQ 188 Query: 98 ---IDMIKCIYCGLCQEACPVDAIV 119 + C+ CG C +ACP A++ Sbjct: 189 QDPMGDSTCVACGECVQACPTGALM 213 >gi|160935395|ref|ZP_02082777.1| hypothetical protein CLOBOL_00290 [Clostridium bolteae ATCC BAA-613] gi|158441753|gb|EDP19453.1| hypothetical protein CLOBOL_00290 [Clostridium bolteae ATCC BAA-613] Length = 244 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 12/74 (16%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 +C C C + CP IT P ++I CI CG C E CP A+V Sbjct: 177 RQCRGCGNCLSKCPQTCITTAQVP-----------FEIQKEHCIRCGNCLEVCPFGAVVR 225 Query: 121 GPNF-EFATETRQE 133 A + R++ Sbjct: 226 REEDGTTAGQWRKD 239 >gi|111075024|gb|ABH04874.1| NAD(P)H-quinone oxidoreductase 51 kDa subunit [Heliobacillus mobilis] Length = 609 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 33/93 (35%), Gaps = 15/93 (16%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80 +RY F+ + + + L + C C LC CP AIT Sbjct: 524 STTIRY-FREEYLAHIQERRCPAGVC----RELTTFEIDGALCNGCGLCRRDCPTDAITG 578 Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + R + ID KCI CG C ++C Sbjct: 579 STKQR----------HVIDQEKCIRCGNCVDSC 601 Score = 38.5 bits (88), Expect = 0.27, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 8/62 (12%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 I+ R ++ID C CGLC+ CP DAI T+Q D+ Sbjct: 537 HIQERRCPAGVCRELTTFEIDGALCNGCGLCRRDCPTDAI--------TGSTKQRHVIDQ 588 Query: 139 ER 140 E+ Sbjct: 589 EK 590 >gi|70729914|ref|YP_259653.1| dihydropyrimidine dehydrogenase [Pseudomonas fluorescens Pf-5] gi|68344213|gb|AAY91819.1| dihydroorotate dehydrogenase family protein [Pseudomonas fluorescens Pf-5] Length = 424 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 4/66 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117 ++ CI C C C + + R DG+ Y++ +C+ C LCQ CPV Sbjct: 341 DQQACIGCGRCHIACEDTSHQAIASLRQADGSH---VYEVIDDECVGCNLCQITCPVQDC 397 Query: 118 IVEGPN 123 I P Sbjct: 398 IEMVPQ 403 >gi|330721036|gb|EGG99188.1| Electron transport complex protein RnfC [gamma proteobacterium IMCC2047] Length = 441 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 10/78 (12%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQ 110 P E+ CI C +C CPA + P+ ++ +D +++ CI CG C Sbjct: 33 PDPAPEQACIRCGMCAEACPASLL-----PQQLYWFSKSREFDKALSHNLLDCIECGACS 87 Query: 111 EACPVDAIVEGPNFEFAT 128 CP I + FA Sbjct: 88 YVCP-SNIPLVQYYRFAK 104 >gi|261211946|ref|ZP_05926232.1| electron transport complex protein RnfB [Vibrio sp. RC341] gi|260838554|gb|EEX65205.1| electron transport complex protein RnfB [Vibrio sp. RC341] Length = 195 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 24/79 (30%), Gaps = 10/79 (12%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103 S E+ CI C C CP AI + + + +C Sbjct: 95 SAHDLDNKVKMVAFIHEDMCIGCTKCIQACPVDAIVGGNK----------ALHTVIKNEC 144 Query: 104 IYCGLCQEACPVDAIVEGP 122 C LC CP D I P Sbjct: 145 TGCDLCVAPCPTDCIEMIP 163 >gi|257094524|ref|YP_003168165.1| electron transport complex protein RnfB [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257047048|gb|ACV36236.1| electron transport complex, RnfABCDGE type, B subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 180 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 10/67 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ CI C LC CP AI + + + C C LC + CPV+ I Sbjct: 106 DEQTCIGCTLCIQACPVDAIVGAAKQ----------MHTVVEPLCTGCELCVKPCPVECI 155 Query: 119 VEGPNFE 125 P E Sbjct: 156 HMLPINE 162 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 14/37 (37%), Positives = 16/37 (43%) Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + ID CI C LC +ACPVDAI Sbjct: 89 EVKPLEAEEKPKQVAIIDEQTCIGCTLCIQACPVDAI 125 >gi|313117476|ref|YP_004044459.1| formate dehydrogenase, alpha subunit, archaeal-type [Halogeometricum borinquense DSM 11551] gi|312294367|gb|ADQ68798.1| formate dehydrogenase, alpha subunit, archaeal-type [Halogeometricum borinquense DSM 11551] Length = 1098 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 4/68 (5%) Query: 57 PNGEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 +CI C C C + IE ++ + +C+ CG C Sbjct: 207 QIDRNKCILCNRCVEACNDVQVEGVLRIEGSGPDTRIGFQSDAETMADSECVSCGHCATV 266 Query: 113 CPVDAIVE 120 CP +I E Sbjct: 267 CPTGSITE 274 >gi|289811295|ref|ZP_06541924.1| electron transport complex protein RnfB [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 171 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 22/67 (32%), Gaps = 10/67 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI + + + C C LC + CP I Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVDPCPTHCI 162 Query: 119 VEGPNFE 125 P E Sbjct: 163 ELRPVNE 169 Score = 35.1 bits (79), Expect = 3.3, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C C +ACPVDAI Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132 >gi|239617513|ref|YP_002940835.1| Cobyrinic acid ac-diamide synthase [Kosmotoga olearia TBF 19.5.1] gi|239506344|gb|ACR79831.1| Cobyrinic acid ac-diamide synthase [Kosmotoga olearia TBF 19.5.1] Length = 282 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 25/81 (30%), Gaps = 11/81 (13%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 + L +++C C C +C AI++ + Sbjct: 48 EVKFEHEEQVLLLLPKVNKDKCTLCGECARVCQFGAISVFK-----------TGVMVFDS 96 Query: 102 KCIYCGLCQEACPVDAIVEGP 122 C CG C CP AI E P Sbjct: 97 LCHGCGACSIICPTKAIYEVP 117 >gi|167045123|gb|ABZ09786.1| putative 4Fe-4S binding domain protein [uncultured marine crenarchaeote HF4000_APKG8I13] Length = 99 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 1/68 (1%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C LC IC + G +R + +CI G C CP AI Sbjct: 12 QMCIGCALCVEICTTLGPDVLRVKPVE-GWKRGKAFVFYPERCISDGACIGVCPTKAIFW 70 Query: 121 GPNFEFAT 128 +F Sbjct: 71 MRPMDFTV 78 >gi|187251160|ref|YP_001875642.1| hydrogenase large subunit domain-containing protein [Elusimicrobium minutum Pei191] gi|186971320|gb|ACC98305.1| Hydrogenase large subunit domain protein [Elusimicrobium minutum Pei191] Length = 482 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 7/70 (10%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT-------VRYDIDMIKCIYCGLC 109 + +C+ C LC +CP AI P ID KC+ CG C Sbjct: 123 HIDKTKCVECGLCAKVCPFSAILSYKRPCEKACKVVNAISMNSTKEAKIDDKKCVSCGAC 182 Query: 110 QEACPVDAIV 119 CP AI+ Sbjct: 183 INQCPFGAIM 192 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 12/58 (20%) Query: 63 CIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C CE +CP AI+ + + H ID KC+ CGLC + CP AI Sbjct: 97 CRGCIAHRCEQVCPKNAISFDHEQKAH----------IDKTKCVECGLCAKVCPFSAI 144 >gi|163736025|ref|ZP_02143450.1| formate dehydrogenase, alpha subunit [Roseobacter litoralis Och 149] gi|161390692|gb|EDQ15036.1| formate dehydrogenase, alpha subunit [Roseobacter litoralis Och 149] Length = 921 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 5/67 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM----IKCIYCGLCQEACP 114 + CI C LC C + + G +D+ C+ CG C +ACP Sbjct: 147 NLDACIQCGLCVRACR-EVQVNDVIGMAGRGHDSYPTFDMADPMGDSTCVACGECVQACP 205 Query: 115 VDAIVEG 121 A++ Sbjct: 206 TGALMPS 212 >gi|116619258|ref|YP_821414.1| NADH-quinone oxidoreductase subunit G [Candidatus Solibacter usitatus Ellin6076] gi|116222420|gb|ABJ81129.1| NADH-quinone oxidoreductase, chain G [Candidatus Solibacter usitatus Ellin6076] Length = 761 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 29/96 (30%), Gaps = 10/96 (10%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 EK T + RCI C C IC G Sbjct: 128 EEKVHTPEKQFSPVVFF----DAPRCILCFRCVRICNEGLGVGALGVINRGVVSEIAPNV 183 Query: 98 IDMIKCIYCGLCQEACPVDAI------VEGPNFEFA 127 D ++C CG C + CPV A+ + +E A Sbjct: 184 GDHLECDECGACIDICPVGALTSGIYRYQTRPWEMA 219 >gi|298506822|gb|ADI85545.1| electron transfer flavoprotein, alpha subunit [Geobacter sulfurreducens KN400] Length = 447 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 29/81 (35%), Gaps = 16/81 (19%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACK-LCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 + RG L E +CIAC C++ CP I + I Sbjct: 4 PVKPKKPRGRARLI-----EGKCIACGARCQSACPVNCIDMNDAGEP----------IIL 48 Query: 100 MIKCIYCGLCQEACPVDAIVE 120 KCI C C + CP +A+ Sbjct: 49 SEKCIGCVKCVKVCPAEALEM 69 Score = 35.1 bits (79), Expect = 3.3, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 1/39 (2%) Query: 85 RCHDGTRRTVRYDIDMIKCIYCGL-CQEACPVDAIVEGP 122 + + R + KCI CG CQ ACPV+ I Sbjct: 3 QPVKPKKPRGRARLIEGKCIACGARCQSACPVNCIDMND 41 >gi|237738029|ref|ZP_04568510.1| MinD family protein [Fusobacterium mortiferum ATCC 9817] gi|229419909|gb|EEO34956.1| MinD family protein [Fusobacterium mortiferum ATCC 9817] Length = 280 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 28/82 (34%), Gaps = 19/82 (23%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 + G +++ E+CI C C C +A+ Sbjct: 49 PSEKEKNGFLGMKKAKIDSEKCIHCNRCYEYCKFEAMDNV-------------------Q 89 Query: 102 KCIYCGLCQEACPVDAIVEGPN 123 KC CG+C+ CPV AI N Sbjct: 90 KCEGCGVCEYICPVGAIEMIEN 111 >gi|229523194|ref|ZP_04412601.1| electron transport complex protein RnfC [Vibrio cholerae TM 11079-80] gi|229339557|gb|EEO04572.1| electron transport complex protein RnfC [Vibrio cholerae TM 11079-80] Length = 880 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 29/109 (26%), Gaps = 20/109 (18%) Query: 13 LKEFVGA---FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69 L + L + P K + + L N CI C C Sbjct: 360 LPRLIMGGPMMGFTLPHA-------QVPITKTANCILAPTRNELTSSDNEMA-CIRCGQC 411 Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMI----KCIYCGLCQEACP 114 CP + P+ + +D CI CG C CP Sbjct: 412 AEACPVSLL-----PQQLQWHAKAEEFDKCEELNLKDCIECGACAYVCP 455 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 10/13 (76%), Positives = 10/13 (76%) Query: 103 CIYCGLCQEACPV 115 CI CG C EACPV Sbjct: 405 CIRCGQCAEACPV 417 >gi|222054300|ref|YP_002536662.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp. FRC-32] gi|221563589|gb|ACM19561.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp. FRC-32] Length = 427 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 2/64 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C C ICP AI++ S R + ++ C+ CG+C +C AI Sbjct: 288 DAHSCSGCGRCADICPIGAISVVSKHEVDGVPRTSGV--VNGDICLGCGICVRSCSATAI 345 Query: 119 VEGP 122 P Sbjct: 346 KLVP 349 Score = 34.3 bits (77), Expect = 5.0, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 13/35 (37%) Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 C CG C + CP+ AI E R + Sbjct: 292 CSGCGRCADICPIGAISVVSKHEVDGVPRTSGVVN 326 >gi|154249084|ref|YP_001409909.1| electron transport complex, RnfABCDGE type, C subunit [Fervidobacterium nodosum Rt17-B1] gi|154153020|gb|ABS60252.1| electron transport complex, RnfABCDGE type, C subunit [Fervidobacterium nodosum Rt17-B1] Length = 435 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 20/74 (27%), Gaps = 1/74 (1%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100 G + CI C C +CP + I + Sbjct: 339 TPILKGNNGLTIITEQKRESTNCIRCSYCVHVCPMNLQPYLLDL-LSRKKKYDEAAAIGL 397 Query: 101 IKCIYCGLCQEACP 114 + CI CG C CP Sbjct: 398 LDCIECGSCTYICP 411 >gi|119385581|ref|YP_916636.1| formate dehydrogenase, alpha subunit [Paracoccus denitrificans PD1222] gi|119376176|gb|ABL70940.1| formate dehydrogenase alpha subunit [Paracoccus denitrificans PD1222] Length = 959 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 4/87 (4%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRT 93 +G + + + +CI C C C A+TIE + Sbjct: 154 DAEGPNPEYRPKDQSNPYFTFDPAKCIVCSRCVRACEEVQGTFALTIEGRGFDSRVSAGL 213 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVE 120 D C+ CG C + CP ++E Sbjct: 214 ASDDFLSSDCVSCGACVQVCPTATLIE 240 >gi|332534029|ref|ZP_08409878.1| electron transport complex protein RnfB [Pseudoalteromonas haloplanktis ANT/505] gi|332036466|gb|EGI72934.1| electron transport complex protein RnfB [Pseudoalteromonas haloplanktis ANT/505] Length = 184 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 10/69 (14%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E+ CI C C CP AI + + + + +C C LC E CPVD Sbjct: 108 YIREDECIGCTKCIQACPVDAILGAT----------RQMHTVLIDECTGCDLCVEPCPVD 157 Query: 117 AIVEGPNFE 125 I P E Sbjct: 158 CIDMLPVAE 166 >gi|331001833|ref|ZP_08325355.1| pyruvate:ferredoxin oxidoreductase [Lachnospiraceae oral taxon 107 str. F0167] gi|330412807|gb|EGG92190.1| pyruvate:ferredoxin oxidoreductase [Lachnospiraceae oral taxon 107 str. F0167] Length = 1175 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 21/81 (25%), Gaps = 15/81 (18%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG N + CI C C +CP A S Sbjct: 681 RGIAVNMPIWN-SDNCIQCGFCSYVCPHAVIRTVALTEDEANNAPEGMSILPMTGMPNYK 739 Query: 94 VRYDIDMIKCIYCGLCQEACP 114 + + C CG C CP Sbjct: 740 FTVAVSALDCTGCGSCANVCP 760 >gi|323492347|ref|ZP_08097500.1| electron transport complex protein RnfB [Vibrio brasiliensis LMG 20546] gi|323313394|gb|EGA66505.1| electron transport complex protein RnfB [Vibrio brasiliensis LMG 20546] Length = 194 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 24/79 (30%), Gaps = 10/79 (12%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103 S E+ CI C C CP AI + + + +C Sbjct: 95 SAHDLENAVKTVAFIHEDMCIGCTKCIQACPVDAIVGGTK----------ALHTVIKDEC 144 Query: 104 IYCGLCQEACPVDAIVEGP 122 C LC CP D I P Sbjct: 145 TGCDLCVAPCPTDCIEMIP 163 >gi|320161502|ref|YP_004174726.1| putative ferredoxin [Anaerolinea thermophila UNI-1] gi|319995355|dbj|BAJ64126.1| putative ferredoxin [Anaerolinea thermophila UNI-1] Length = 136 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 21/61 (34%), Gaps = 6/61 (9%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C +CP + I Y ID CI CG C CP +AI Sbjct: 9 CLRDGGCATVCPVECIV------PGQPVDEWPWYYIDPDTCIDCGACVPECPWEAIFPED 62 Query: 123 N 123 Sbjct: 63 E 63 >gi|307243874|ref|ZP_07525999.1| pyruvate synthase [Peptostreptococcus stomatis DSM 17678] gi|306492696|gb|EFM64724.1| pyruvate synthase [Peptostreptococcus stomatis DSM 17678] Length = 1177 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 27/87 (31%), Gaps = 18/87 (20%) Query: 57 PNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRYDIDMI- 101 + CI C C +CP A + ++Y I + Sbjct: 684 EWQIDNCIQCNQCSLVCPHAAIRPFLLTEEEVANAPEGFETKKAAGKGLEGLQYRIQVSA 743 Query: 102 -KCIYCGLCQEACP--VDAIVEGPNFE 125 C CG C + CP A++ P E Sbjct: 744 MDCTGCGNCADICPAKTKALIMKPMEE 770 >gi|261253562|ref|ZP_05946135.1| electron transport complex protein RnfB [Vibrio orientalis CIP 102891] gi|260936953|gb|EEX92942.1| electron transport complex protein RnfB [Vibrio orientalis CIP 102891] Length = 194 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 24/79 (30%), Gaps = 10/79 (12%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103 S E+ CI C C CP AI + + + +C Sbjct: 95 SAHDLENAVKTVAFIHEDMCIGCTKCIQACPVDAIVGGTK----------ALHTVIKDEC 144 Query: 104 IYCGLCQEACPVDAIVEGP 122 C LC CP D I P Sbjct: 145 TGCDLCVAPCPTDCIEMIP 163 >gi|227111413|ref|ZP_03825069.1| electron transport complex protein RnfB [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 192 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 23/73 (31%), Gaps = 10/73 (13%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 A + E CI C C CP AI + + + C C LC Sbjct: 105 PARQVAWIDESNCIGCTKCIQACPVDAIIGSTK----------AVHTVVSDLCTGCDLCV 154 Query: 111 EACPVDAIVEGPN 123 CP D I P Sbjct: 155 SPCPTDCIELRPI 167 >gi|220935791|ref|YP_002514690.1| electron transport complex, RnfABCDGE type, C subunit [Thioalkalivibrio sp. HL-EbGR7] gi|219997101|gb|ACL73703.1| electron transport complex, RnfABCDGE type, C subunit [Thioalkalivibrio sp. HL-EbGR7] Length = 532 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 36/102 (35%), Gaps = 11/102 (10%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 CI C C CPAQ + + D + CI CG C CP I Sbjct: 377 PCIRCGQCAEACPAQ-LLPQQLYWFARAKDFDKAQDYSLFDCIECGCCAYVCP-SNIPLV 434 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + FA + + +ER +R +++I R R Sbjct: 435 QYYRFA----KNEIWSQER-----ERRKADIARERHEFRQAR 467 >gi|118594392|ref|ZP_01551739.1| formate dehydrogenase, alpha subunit [Methylophilales bacterium HTCC2181] gi|118440170|gb|EAV46797.1| formate dehydrogenase, alpha subunit [Methylophilales bacterium HTCC2181] Length = 947 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 2/80 (2%) Query: 55 RYPNGEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + +CI C C C + R D D +C+ CG C +A Sbjct: 157 YFTFDPSKCIVCSRCVRACEEVQGTFALTIDGRGFDSKVSAGNKDFIDSECVSCGACVQA 216 Query: 113 CPVDAIVEGPNFEFATETRQ 132 CP ++E + R Sbjct: 217 CPTATLIENSIIDNGVPDRS 236 >gi|91773344|ref|YP_566036.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methanococcoides burtonii DSM 6242] gi|91712359|gb|ABE52286.1| conserved methanogen protein with ferredoxin domains [Methanococcoides burtonii DSM 6242] Length = 540 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 23/68 (33%), Gaps = 9/68 (13%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY--CGLCQE 111 CI C CE CP AI I + + +C+ C C Sbjct: 472 IIIEEHAPECIRCGQCEVECPEDAIKIIERDGELYA-------NYNSERCLGTSCRRCVA 524 Query: 112 ACPVDAIV 119 CPVDAI Sbjct: 525 VCPVDAIH 532 >gi|116754868|ref|YP_843986.1| methyl-viologen-reducing hydrogenase, delta subunit [Methanosaeta thermophila PT] gi|116666319|gb|ABK15346.1| CoB--CoM heterodisulfide reductase subunit A [Methanosaeta thermophila PT] Length = 791 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 14/76 (18%) Query: 47 FRGEHAL--RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 F+GE L ++CI C+LC CP++AI+++ +C Sbjct: 566 FKGEIELDPTVAFVDRDKCIGCRLCVDTCPSRAISVKDTAFVD------------EARCK 613 Query: 105 YCGLCQEACPVDAIVE 120 CG C ACPVDAI Sbjct: 614 GCGTCAAACPVDAIEM 629 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 26/88 (29%), Gaps = 8/88 (9%) Query: 46 RFRGEHALRRYPNGEERCIAC-KLCEAICPAQAITIESGPRCHDGTRRTVRYD------- 97 FR + C C C + CP + Sbjct: 231 HFRVTGVTKPRYVDPTLCKGCINECSSACPVEVPNEYDFGLGKRKAIYMAIPQSVPLVAC 290 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFE 125 ID CI CGLC EACP DA+ E Sbjct: 291 IDTNACIGCGLCAEACPADAVKYDQQAE 318 >gi|331003589|ref|ZP_08327086.1| hypothetical protein HMPREF0491_01948 [Lachnospiraceae oral taxon 107 str. F0167] gi|330412430|gb|EGG91821.1| hypothetical protein HMPREF0491_01948 [Lachnospiraceae oral taxon 107 str. F0167] Length = 420 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 21/58 (36%), Gaps = 6/58 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 +E+C+ C C C A T I+ KC+ C LC CPV Sbjct: 341 DKEKCVKCGRCYVSCFDAAHQAIEYD------YETRVPTINEEKCVGCHLCLNVCPVM 392 >gi|329961451|ref|ZP_08299556.1| ferredoxin [Bacteroides fluxus YIT 12057] gi|328531799|gb|EGF58625.1| ferredoxin [Bacteroides fluxus YIT 12057] Length = 315 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 8/81 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------DMIKCIYCGLCQ 110 E +C AC C CP I I + + CI CG C Sbjct: 169 DEAKCTACGACAKACPKNIIEIRPQGKKSRRMYVQCVNKDKGAVARKACTVACIGCGKCV 228 Query: 111 EACPVDAIVEGPNFEFATETR 131 + CP +AI N + + Sbjct: 229 KVCPFEAITLENNLAYIDPNK 249 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 9/65 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C C A C AI + ++D KC CG C +ACP + I Sbjct: 138 CSYGCLGCGDCVAACQFDAIHMNPETGLP---------EVDEAKCTACGACAKACPKNII 188 Query: 119 VEGPN 123 P Sbjct: 189 EIRPQ 193 Score = 39.3 bits (90), Expect = 0.16, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 11/60 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C C +CP +AIT+E+ ID KC C C+EACP + I Sbjct: 217 CTVACIGCGKCVKVCPFEAITLENNLAY-----------IDPNKCKSCRKCEEACPQNTI 265 >gi|298375634|ref|ZP_06985591.1| protein HymB [Bacteroides sp. 3_1_19] gi|301310275|ref|ZP_07216214.1| protein HymB [Bacteroides sp. 20_3] gi|298268134|gb|EFI09790.1| protein HymB [Bacteroides sp. 3_1_19] gi|300831849|gb|EFK62480.1| protein HymB [Bacteroides sp. 20_3] Length = 596 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 10/68 (14%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 L +Y E+C C LC +CP AIT R + + ID CI CG C E Sbjct: 537 ELTQYFINPEKCKGCTLCARVCPVHAITG----------GRKIPHIIDPQACIRCGTCME 586 Query: 112 ACPVDAIV 119 C AI Sbjct: 587 KCKFGAIY 594 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 16/40 (40%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + R +Y I+ KC C LC CPV AI Sbjct: 524 HVREHRCPSHQCRELTQYFINPEKCKGCTLCARVCPVHAI 563 >gi|291533084|emb|CBL06197.1| Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Megamonas hypermegale ART12/1] Length = 556 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 23/90 (25%), Gaps = 17/90 (18%) Query: 51 HALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY 96 A+ ++CI C C +CP A Sbjct: 203 IAINVPEWDIDKCIQCNQCSFVCPHAAIRPVLMTDEEVANAPETMKSKPALGAKGLNFAI 262 Query: 97 DIDMIKCIYCGLCQEACPVD---AIVEGPN 123 I C CG C + CP A+ P Sbjct: 263 TISAKDCAGCGNCADICPAPKGSALAMKPI 292 >gi|256839949|ref|ZP_05545458.1| NADH oxidoreductase (quinone), F subunit [Parabacteroides sp. D13] gi|256738879|gb|EEU52204.1| NADH oxidoreductase (quinone), F subunit [Parabacteroides sp. D13] Length = 596 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 10/68 (14%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 L +Y E+C C LC +CP AIT R + + ID CI CG C E Sbjct: 537 ELTQYFINPEKCKGCTLCARVCPVHAITG----------GRKIPHIIDPQACIRCGTCME 586 Query: 112 ACPVDAIV 119 C AI Sbjct: 587 KCKFGAIY 594 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 16/40 (40%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + R +Y I+ KC C LC CPV AI Sbjct: 524 HVREHRCPSHQCRELTQYFINPEKCKGCTLCARVCPVHAI 563 >gi|253578107|ref|ZP_04855379.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251850425|gb|EES78383.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 358 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 22/120 (18%), Positives = 39/120 (32%), Gaps = 12/120 (10%) Query: 3 IFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRY----PN 58 ++ L + + ++ + ++ + + R AL + Sbjct: 244 TWKEEEITLLTPDGEISMAEAVKKYGNPAFNVDRTEVRKNI--WTRMAGALNIFQKKPYI 301 Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++C+ C +C CP G + D KCI C CQE CP AI Sbjct: 302 EADKCVRCGICVQSCPV------PGKAVDFRKGKGKPPVYDYRKCIRCFCCQEMCPKKAI 355 >gi|160902190|ref|YP_001567771.1| NADH dehydrogenase (quinone) [Petrotoga mobilis SJ95] gi|160359834|gb|ABX31448.1| NADH dehydrogenase (quinone) [Petrotoga mobilis SJ95] Length = 485 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 27/68 (39%), Gaps = 10/68 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L RY E C C C +CP +AI E + ID KCI CG C Sbjct: 427 LIRYEIIPENCTGCTACARVCPTEAIQGELRKP----------HTIDQEKCIKCGSCYTT 476 Query: 113 CPVDAIVE 120 C +AI Sbjct: 477 CRFNAIKI 484 Score = 42.0 bits (97), Expect = 0.030, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 8/51 (15%) Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140 + +RY+I C C C CP +AI E R+ D+E+ Sbjct: 424 CKNLIRYEIIPENCTGCTACARVCPTEAIQ--------GELRKPHTIDQEK 466 >gi|53802977|ref|YP_115288.1| electron transport complex protein RnfC [Methylococcus capsulatus str. Bath] gi|53756738|gb|AAU91029.1| electron transport complex, C subunit [Methylococcus capsulatus str. Bath] Length = 523 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 13/103 (12%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 CI C C +CP + + + + CI CG C CP I Sbjct: 370 PCIRCGACAEVCPIN-LLPQQLYWYSRADNLRRVEEYHVTDCIECGCCDYVCPSH-IPLV 427 Query: 122 PNF-----EFATETRQELYYDKERLLNNGDRWES-EIVRNIVT 158 F E + R + D+ R +R+E+ +I + Sbjct: 428 QYFRAAKSELVAKQRDRVKADRAR-----ERFEARQIRKEREK 465 >gi|126462585|ref|YP_001043699.1| dihydropyrimidine dehydrogenase [Rhodobacter sphaeroides ATCC 17029] gi|221639626|ref|YP_002525888.1| dihydropyrimidine dehydrogenase [Rhodobacter sphaeroides KD131] gi|126104249|gb|ABN76927.1| dihydrouracil dehydrogenase (NAD+) / dihydropyrimidine dehydrogenase (NADP+) [Rhodobacter sphaeroides ATCC 17029] gi|221160407|gb|ACM01387.1| Dihydrouracil dehydrogenase (NAD+) / dihydropyrimidine dehydrogenase [Rhodobacter sphaeroides KD131] Length = 434 Score = 46.2 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 8/76 (10%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI C C A C E + + +C+ Sbjct: 330 QYLNLNYVTKAQIDQDLCIKCGRCYAAC-------EDTSHQAIAMSTDRTFTVKDEECVA 382 Query: 106 CGLCQEACPV-DAIVE 120 C LC + CPV D I Sbjct: 383 CNLCVDVCPVEDCITM 398 >gi|331641950|ref|ZP_08343085.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli H736] gi|331038748|gb|EGI10968.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli H736] Length = 1048 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 520 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPILKEELCTQCNHCVAAC 573 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 574 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 633 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 634 RQNPEIKAINMMSRLEHVEEEK 655 >gi|325262532|ref|ZP_08129269.1| protein HymB [Clostridium sp. D5] gi|324032364|gb|EGB93642.1| protein HymB [Clostridium sp. D5] Length = 597 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 35/94 (37%), Gaps = 14/94 (14%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 ++F+ + + +K L +Y ++C C LC CP+ AI Sbjct: 516 HYFRDEYIAHIVDKKCPAGVC----KDLLQYKIDADKCKGCTLCARTCPSDAIIGSVKEP 571 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + I+ KC+ CG C E C AI Sbjct: 572 ----------HMINPEKCVKCGACMEKCRFGAIY 595 >gi|323498079|ref|ZP_08103084.1| electron transport complex protein RnfC [Vibrio sinaloensis DSM 21326] gi|323316859|gb|EGA69865.1| electron transport complex protein RnfC [Vibrio sinaloensis DSM 21326] Length = 617 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 37/104 (35%), Gaps = 9/104 (8%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C C CPA + + ++++ CI CG C CP I Sbjct: 378 CIRCGQCAEACPAS-LLPQQLQWHAKAEEFDKCEELNLKDCIECGACAFVCP-SEIPLVQ 435 Query: 123 NFEFAT---ETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + A TR+E + E R+E + R + D R Sbjct: 436 YYRQAKAEIRTRKE---ESEAAERAKIRFEEKKAR-MERDKAER 475 Score = 35.8 bits (81), Expect = 1.7, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 19/43 (44%) Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + A ++ TR+ + + + CI CG C EACP Sbjct: 347 LPHANVPITKTANCILAPTRKEISPNQYEMACIRCGQCAEACP 389 >gi|307138027|ref|ZP_07497383.1| putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved protein; 4Fe-4S cluster binding protein [Escherichia coli H736] Length = 1039 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 511 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPILKEELCTQCNHCVAAC 564 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 565 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 624 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 625 RQNPEIKAINMMSRLEHVEEEK 646 >gi|303327154|ref|ZP_07357596.1| putative glutamate synthase, iron-sulfur cluster-binding subunit [Desulfovibrio sp. 3_1_syn3] gi|302863142|gb|EFL86074.1| putative glutamate synthase, iron-sulfur cluster-binding subunit [Desulfovibrio sp. 3_1_syn3] Length = 543 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 27/84 (32%), Gaps = 14/84 (16%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--------------TVRYDID 99 ERC C C A C AI R +R+ + Sbjct: 16 WTIEYHAERCTMCGSCVAACTFNAIEAGVSHRSVTVSRKAFPEPAAEHFALPVIRQKTRI 75 Query: 100 MIKCIYCGLCQEACPVDAIVEGPN 123 C+ CG+C++ CP AI N Sbjct: 76 EQACVGCGMCEKVCPNRAIRPVRN 99 Score = 35.1 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 17/38 (44%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134 + +C CG C AC +AI G + T +R+ Sbjct: 19 EYHAERCTMCGSCVAACTFNAIEAGVSHRSVTVSRKAF 56 >gi|294677265|ref|YP_003577880.1| pyruvate-flavodoxin oxidoreductase [Rhodobacter capsulatus SB 1003] gi|294476085|gb|ADE85473.1| pyruvate-flavodoxin oxidoreductase [Rhodobacter capsulatus SB 1003] Length = 1209 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 29/96 (30%), Gaps = 24/96 (25%) Query: 63 CIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY--DIDMIKCIYC 106 CI C C +CP A + + R+ + C C Sbjct: 707 CIQCGQCSFVCPHSVIRAKYFDEDLLEGAPEVFKSAPVNARGYPGARFSLQFHVEDCTGC 766 Query: 107 GLCQEACP--------VDAIVEGPNFEFATETRQEL 134 GLC EACP V A+ E RQ + Sbjct: 767 GLCIEACPAQSPVEPGVKALNLTDKAGLLEEARQAM 802 >gi|292492763|ref|YP_003528202.1| electron transport complex, RnfABCDGE type, C subunit [Nitrosococcus halophilus Nc4] gi|291581358|gb|ADE15815.1| electron transport complex, RnfABCDGE type, C subunit [Nitrosococcus halophilus Nc4] Length = 515 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 2/67 (2%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 CI C C +CP Q + + D + CI CG C CP I Sbjct: 368 PCIRCGACGEVCPVQ-LLPQQLYWHARAKELDKLQDYHLFDCIECGCCDYVCPSH-IPLV 425 Query: 122 PNFEFAT 128 + +A Sbjct: 426 HYYRYAK 432 >gi|293396259|ref|ZP_06640538.1| electron transport complex protein RnfB [Serratia odorifera DSM 4582] gi|291421239|gb|EFE94489.1| electron transport complex protein RnfB [Serratia odorifera DSM 4582] Length = 191 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 21/66 (31%), Gaps = 10/66 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C C CP AI + + + C C LC CP D Sbjct: 110 FIDEANCIGCTKCIQACPVDAIVGAT----------RAMHTVITDLCTGCDLCVAPCPTD 159 Query: 117 AIVEGP 122 I P Sbjct: 160 CIEMKP 165 >gi|269139048|ref|YP_003295749.1| electron transport complex protein [Edwardsiella tarda EIB202] gi|267984709|gb|ACY84538.1| electron transport complex protein [Edwardsiella tarda EIB202] gi|304558980|gb|ADM41644.1| Electron transport complex protein RnfB [Edwardsiella tarda FL6-60] Length = 191 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI + + + +C CGLC CP I Sbjct: 112 DEANCIGCTKCIQSCPVDAIVGAT----------RALHTVISDQCTGCGLCLPPCPTSCI 161 Query: 119 VEGPNFEFATETRQEL 134 P + +L Sbjct: 162 QLVPVPTTTATWKWDL 177 Score = 35.1 bits (79), Expect = 3.0, Method: Composition-based stats. Identities = 12/21 (57%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C C ++CPVDAI Sbjct: 111 IDEANCIGCTKCIQSCPVDAI 131 >gi|262381803|ref|ZP_06074941.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_33B] gi|262296980|gb|EEY84910.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_33B] Length = 596 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 10/68 (14%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 L +Y E+C C LC +CP AIT R + + ID CI CG C E Sbjct: 537 ELTQYFINPEKCKGCTLCARVCPVHAITG----------GRKIPHIIDPQACIRCGTCME 586 Query: 112 ACPVDAIV 119 C AI Sbjct: 587 KCKFGAIY 594 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 16/40 (40%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + R +Y I+ KC C LC CPV AI Sbjct: 524 HVREHRCPSHQCRELTQYFINPEKCKGCTLCARVCPVHAI 563 >gi|257462471|ref|ZP_05626883.1| electron transport complex, RnfABCDGE type, B subunit [Fusobacterium sp. D12] gi|317060128|ref|ZP_07924613.1| electron transport complex protein [Fusobacterium sp. D12] gi|313685804|gb|EFS22639.1| electron transport complex protein [Fusobacterium sp. D12] Length = 325 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 28/92 (30%), Gaps = 11/92 (11%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 P K T + CI C +C+ CP AI + + Sbjct: 185 KSVIAMTPAAKKVTVKCMSKDKGGDAKKACGIACIGCGMCQRTCPFGAIEVSNNLA---- 240 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 ID KC C LC CP AI G Sbjct: 241 -------KIDPAKCKNCQLCVVVCPTKAIYTG 265 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 5/70 (7%) Query: 59 GEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIK---CIYCGLCQEAC 113 EE CI+C LC CP A+T + + D CI CG+CQ C Sbjct: 169 DEEACISCGLCVKACPKSVIAMTPAAKKVTVKCMSKDKGGDAKKACGIACIGCGMCQRTC 228 Query: 114 PVDAIVEGPN 123 P AI N Sbjct: 229 PFGAIEVSNN 238 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 10/67 (14%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 + + C+ CE +CP AI + +D CI CGLC +ACP Sbjct: 136 DKSCKYGCLGYGDCERVCPVGAIVVNEKGIAS----------VDEEACISCGLCVKACPK 185 Query: 116 DAIVEGP 122 I P Sbjct: 186 SVIAMTP 192 >gi|257457105|ref|ZP_05622282.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Treponema vincentii ATCC 35580] gi|257445484|gb|EEV20550.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Treponema vincentii ATCC 35580] Length = 1184 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 30/98 (30%), Gaps = 24/98 (24%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 T +EK + + E CI C C +CP AI ++ + + Sbjct: 674 TATTQYEKRAIAEHIP--------IWKSELCIQCGQCTVVCPHAAIRMKVYDKSNIDHAP 725 Query: 93 TVRYDIDM----------------IKCIYCGLCQEACP 114 + I C CG+C E CP Sbjct: 726 SAFRSIPYKGKEFDNSLFTIQVSPEDCTGCGICVEQCP 763 Score = 37.4 bits (85), Expect = 0.69, Method: Composition-based stats. Identities = 9/20 (45%), Positives = 9/20 (45%) Query: 101 IKCIYCGLCQEACPVDAIVE 120 CI CG C CP AI Sbjct: 694 ELCIQCGQCTVVCPHAAIRM 713 >gi|256022939|ref|ZP_05436804.1| putative 2-oxoacid-flavodoxin fused oxidoreductase:conserved protein; 4Fe-4S cluster binding protein [Escherichia sp. 4_1_40B] gi|301647151|ref|ZP_07246973.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli MS 146-1] gi|301074740|gb|EFK89546.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Escherichia coli MS 146-1] Length = 1174 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 25/142 (17%), Positives = 33/142 (23%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPILKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|225620844|ref|YP_002722102.1| pyruvate oxireductase [Brachyspira hyodysenteriae WA1] gi|225215664|gb|ACN84398.1| pyruvate oxireductase [Brachyspira hyodysenteriae WA1] Length = 345 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 2/59 (3%) Query: 59 GEERCIACKLCEAICPAQAITIE--SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 + CI C CE +CP I E + + T ID C C C ACP Sbjct: 252 NPKNCIDCANCEVVCPDLCIVWERGTDRKDASKTNVMNMMGIDYQYCKGCLKCVRACPK 310 >gi|224370949|ref|YP_002605113.1| ferredoxin (4Fe-4S iron-sulfur cluster binding protein) [Desulfobacterium autotrophicum HRM2] gi|223693666|gb|ACN16949.1| ferredoxin (4Fe-4S iron-sulfur cluster binding protein) [Desulfobacterium autotrophicum HRM2] Length = 361 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 23/66 (34%), Gaps = 12/66 (18%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 E C AC+ C C AI I +CI CGLC CP Sbjct: 270 WAVVDPEECTACETCLDRCQMNAIEIGDAAVVDH------------ARCIGCGLCVTTCP 317 Query: 115 VDAIVE 120 VDAI Sbjct: 318 VDAIRL 323 Score = 34.3 bits (77), Expect = 5.6, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 22/65 (33%), Gaps = 4/65 (6%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 N C C C + A+ + P R D +C C C + C ++A Sbjct: 237 NPGGMCNCCGDCCGVLR--ALNMLPNPGELVHNRYWAVVD--PEECTACETCLDRCQMNA 292 Query: 118 IVEGP 122 I G Sbjct: 293 IEIGD 297 >gi|183599240|ref|ZP_02960733.1| hypothetical protein PROSTU_02699 [Providencia stuartii ATCC 25827] gi|188021470|gb|EDU59510.1| hypothetical protein PROSTU_02699 [Providencia stuartii ATCC 25827] Length = 208 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 22/64 (34%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 EE CI C C CP AI + + + C C LC CP D I Sbjct: 113 DEENCIGCTKCIQACPVDAIVGAT----------RAMHTVIEDLCTGCDLCVAPCPTDCI 162 Query: 119 VEGP 122 P Sbjct: 163 ELVP 166 Score = 36.2 bits (82), Expect = 1.3, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C C +ACPVDAI Sbjct: 112 IDEENCIGCTKCIQACPVDAI 132 >gi|270308709|ref|YP_003330767.1| reductive dehalogenase [Dehalococcoides sp. VS] gi|270154601|gb|ACZ62439.1| reductive dehalogenase [Dehalococcoides sp. VS] Length = 480 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 22/73 (30%), Gaps = 2/73 (2%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRR--TVRYDIDMIKCIYCGLCQEACPVDA 117 C CK C C A+ D + Y I C++C CQ CP Sbjct: 365 YRFCKTCKKCAESCVFNALPFGDPSWDADFYQPTGFEGYRIVTRLCVFCMACQAVCPFTE 424 Query: 118 IVEGPNFEFATET 130 + + T Sbjct: 425 LHGSFIHQLVKFT 437 >gi|182418369|ref|ZP_02949664.1| pyruvate:ferredoxin oxidoreductase [Clostridium butyricum 5521] gi|237666489|ref|ZP_04526474.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium butyricum E4 str. BoNT E BL5262] gi|154744868|gb|ABS84951.1| pyruvate ferredoxin oxidoreductase [Clostridium butyricum] gi|182377751|gb|EDT75295.1| pyruvate:ferredoxin oxidoreductase [Clostridium butyricum 5521] gi|237657688|gb|EEP55243.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 1169 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 32/105 (30%), Gaps = 20/105 (19%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE---------------- 81 FE G+ + RG + +CI C C +CP AI Sbjct: 665 FEAGTAAFEKRGIAVNVPEWD-SAKCIQCNQCALVCPHAAIRPILVNEDEKAKAPASAKI 723 Query: 82 -SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD--AIVEGPN 123 + + + C CG C + CP A+V P Sbjct: 724 VDAKALKSEEKLYYSMAVTPLDCSGCGNCAQICPAPGKALVMKPQ 768 >gi|149923332|ref|ZP_01911740.1| Fe-S-cluster-containing hydrogenase [Plesiocystis pacifica SIR-1] gi|149815812|gb|EDM75334.1| Fe-S-cluster-containing hydrogenase [Plesiocystis pacifica SIR-1] Length = 1157 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/112 (16%), Positives = 28/112 (25%), Gaps = 17/112 (15%) Query: 29 KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88 K+ + P + + C +C C C A+ G + Sbjct: 877 KSPWSRYDPETHPTLAVPVLTGPHQWGMAVDLNTCTSCNACVIACQAENNIPVVGKKEAA 936 Query: 89 GTRRTVRYDI---------------DMIKCIYC--GLCQEACPVDAIVEGPN 123 R I + C +C C+ CPV A P Sbjct: 937 NGRELHWIRIDRYYVGDGDDPDAVVMPVACQHCETAPCENVCPVQATAHSPE 988 >gi|123442365|ref|YP_001006344.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia enterocolitica subsp. enterocolitica 8081] gi|122089326|emb|CAL12174.1| putative pyruvate-flavodoxin oxidoreductase [Yersinia enterocolitica subsp. enterocolitica 8081] Length = 1177 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 24/138 (17%), Positives = 33/138 (23%), Gaps = 36/138 (26%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A + C C C A C Sbjct: 646 MLAGLGDAL------PVSAFPPDGTWPVGTTQWEKRNIAEDIPIWQPDLCTQCNHCVAAC 699 Query: 74 PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 P A ++E R G + + C C LC E CP Sbjct: 700 PHSAIRAKVVQPDAMSGAPDSLQSLEVKARDMRGQKY--VLQVAPEDCTGCNLCYEVCPA 757 Query: 116 --------DAIVEGPNFE 125 AI P E Sbjct: 758 KDRQNPEIKAINMKPRLE 775 >gi|116235058|dbj|BAF34978.1| trichloroethene reductive dehalogenase [uncultured Dehalococcoides sp.] Length = 554 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 3/60 (5%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID---MIKCIYCGLCQEACPVD 116 E C C +C CP QAI+ E Y+ KCI C C+ CP Sbjct: 434 REFCKTCGICAEHCPNQAISHEGPRYDSPYWDNVSGYEGWHLDYHKCINCTNCETFCPFF 493 >gi|91793220|ref|YP_562871.1| electron transport complex protein RnfC [Shewanella denitrificans OS217] gi|91715222|gb|ABE55148.1| electron transport complex, RnfABCDGE type, C subunit [Shewanella denitrificans OS217] Length = 731 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 40/105 (38%), Gaps = 20/105 (19%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114 E+ CI C C CPA P+ + YD ++ CI CG C CP Sbjct: 379 EEKACIRCGECAVACPA-----LLLPQQLFWHAKAEEYDKAASFNLKDCIECGCCSYVCP 433 Query: 115 VDAIVEGPNFEFAT-----ETRQELYYDKERLLNNGDRWESEIVR 154 I + A ET ++L +K + R+E+ + R Sbjct: 434 -SDIPLVEYYRVAKSAIRLETEEKLQAEKAK-----QRFETRLQR 472 >gi|82523738|emb|CAI78738.1| predicted NADH:ubiquinone oxidoreductase, subunit RfnC [uncultured gamma proteobacterium] Length = 671 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 41/120 (34%), Gaps = 3/120 (2%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 P K + + L P + CI C +C CP + + G Sbjct: 342 RVPIVKTTNCLLAPTDAEL-PLPPPAQACIRCGMCAEACPVS-LLPQQLFWFAQGKEYEK 399 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVR 154 ++ CI CG C ACP I + + L + E+ ++ R+E+ R Sbjct: 400 LEGHNLFDCIECGACSYACP-SNIPLVQYYRASKAEILHLRREHEKAEHSRIRFETRQKR 458 >gi|325288996|ref|YP_004265177.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324964397|gb|ADY55176.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 427 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 25/60 (41%), Gaps = 6/60 (10%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C+ C C +CP AI+ +D C+ CG+C +CP +A+ Sbjct: 292 QECVGCGKCAEVCPVLAISRPDNKEG------RTAVQVDHEVCLGCGVCVRSCPKNAVEF 345 Score = 39.7 bits (91), Expect = 0.12, Method: Composition-based stats. Identities = 12/23 (52%), Positives = 13/23 (56%) Query: 103 CIYCGLCQEACPVDAIVEGPNFE 125 C+ CG C E CPV AI N E Sbjct: 294 CVGCGKCAEVCPVLAISRPDNKE 316 >gi|325280681|ref|YP_004253223.1| 4Fe-4S iron-sulfur binding protein (ferredoxin) [Odoribacter splanchnicus DSM 20712] gi|324312490|gb|ADY33043.1| 4Fe-4S iron-sulfur binding protein (ferredoxin) [Odoribacter splanchnicus DSM 20712] Length = 273 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 13/77 (16%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + L+ P + CI C+ C +CP AI ++ CI C C Sbjct: 192 NFLKAKPVTTDACIDCRRCAKVCPMGAIRLD-------------HPSEVSGICIKCNACV 238 Query: 111 EACPVDAIVEGPNFEFA 127 + CPV A + Sbjct: 239 KQCPVHAKQLTDEAYLS 255 Score = 34.7 bits (78), Expect = 4.0, Method: Composition-based stats. Identities = 10/50 (20%), Positives = 16/50 (32%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 + R + + CI C C + CP+ AI E + Sbjct: 180 YYKPKGRDEEVVNFLKAKPVTTDACIDCRRCAKVCPMGAIRLDHPSEVSG 229 >gi|317490640|ref|ZP_07949110.1| NapH/MauN family ferredoxin-type protein [Eggerthella sp. 1_3_56FAA] gi|325831513|ref|ZP_08164767.1| ferredoxin-type protein, NapH/MauN family [Eggerthella sp. HGA1] gi|316910264|gb|EFV31903.1| NapH/MauN family ferredoxin-type protein [Eggerthella sp. 1_3_56FAA] gi|325486767|gb|EGC89215.1| ferredoxin-type protein, NapH/MauN family [Eggerthella sp. HGA1] Length = 298 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 23/73 (31%), Gaps = 7/73 (9%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G CI C C+ C + +E D R C+ CG Sbjct: 219 GRFGQVNVKIDPAACIHCDACKHACLSDPAILEPALDGCDAIVR-------AGDCMACGS 271 Query: 109 CQEACPVDAIVEG 121 C +ACP A+ Sbjct: 272 CIDACPTRALSFT 284 >gi|297526779|ref|YP_003668803.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Staphylothermus hellenicus DSM 12710] gi|297255695|gb|ADI31904.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Staphylothermus hellenicus DSM 12710] Length = 161 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 28/91 (30%), Positives = 37/91 (40%), Gaps = 23/91 (25%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV---- 119 I C +C ICP AI +E + I+ KCI CG+C CP AI Sbjct: 40 IPCNICANICPFNAIEME---------KIYDLPRINPDKCIGCGVCVPQCPGLAIFVVDL 90 Query: 120 -------EGPNFEFATETRQELYYDKERLLN 143 +EF E R+ L K +LL+ Sbjct: 91 SKPGKALITLPYEFLPEPRKGL---KVKLLD 118 >gi|240103186|ref|YP_002959495.1| Indolepyruvate ferredoxin oxidoreductase alpha subunit (iorA) [Thermococcus gammatolerans EJ3] gi|239910740|gb|ACS33631.1| Indolepyruvate ferredoxin oxidoreductase alpha subunit (iorA) [Thermococcus gammatolerans EJ3] Length = 658 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 9/65 (13%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++C CK C + A+ + + ID + C CG+C + CP DAI Sbjct: 600 DKCTGCKACILLTGCPALVYDPETN---------KVRIDSLLCTGCGVCNQTCPFDAIKF 650 Query: 121 GPNFE 125 E Sbjct: 651 PSELE 655 >gi|166032053|ref|ZP_02234882.1| hypothetical protein DORFOR_01755 [Dorea formicigenerans ATCC 27755] gi|166027776|gb|EDR46533.1| hypothetical protein DORFOR_01755 [Dorea formicigenerans ATCC 27755] Length = 625 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 27/67 (40%), Gaps = 10/67 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 LR Y E+C C C CP AIT + Y ID KCI CG C E Sbjct: 567 LRNYKINPEKCKGCSKCARNCPVGAITG----------KIKSPYVIDSAKCIKCGACLEN 616 Query: 113 CPVDAIV 119 C A+ Sbjct: 617 CSFGAVY 623 >gi|163802833|ref|ZP_02196722.1| electron transport complex protein RnfB [Vibrio sp. AND4] gi|159173373|gb|EDP58196.1| electron transport complex protein RnfB [Vibrio sp. AND4] Length = 197 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 29/92 (31%), Gaps = 11/92 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 + S E+ CI C C CP AI + + + Sbjct: 90 VEVEESAHDLDNKVKTVAFIHEDMCIGCTKCIQACPVDAIVGGTK----------ALHTV 139 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 +C C LC CP D I P E TE+ Sbjct: 140 IKDECTGCDLCVSPCPTDCIEMIPV-ETTTES 170 >gi|156936833|ref|YP_001434629.1| ATPase RIL [Ignicoccus hospitalis KIN4/I] gi|156565817|gb|ABU81222.1| ABC transporter related [Ignicoccus hospitalis KIN4/I] Length = 604 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 23/72 (31%), Gaps = 1/72 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E C C C ++G + I + C CG+C + CP AI Sbjct: 12 DKELCKP-DKCNYECIRFCPINKTGRNKAIELGEDGKPIIHELVCTGCGICIKKCPFQAI 70 Query: 119 VEGPNFEFATET 130 E E Sbjct: 71 HIENLPEEVEEK 82 >gi|150007688|ref|YP_001302431.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides distasonis ATCC 8503] gi|255013607|ref|ZP_05285733.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_7] gi|149936112|gb|ABR42809.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides distasonis ATCC 8503] Length = 596 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 10/68 (14%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 L +Y E+C C LC +CP AIT R + + ID CI CG C E Sbjct: 537 ELTQYFINPEKCKGCTLCARVCPVHAITG----------GRKIPHIIDPQACIRCGTCME 586 Query: 112 ACPVDAIV 119 C AI Sbjct: 587 KCKFGAIY 594 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 16/40 (40%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + R +Y I+ KC C LC CPV AI Sbjct: 524 HVREHRCPSHQCRELTQYFINPEKCKGCTLCARVCPVHAI 563 >gi|148643126|ref|YP_001273639.1| energy-converting hydrogenase B, subunit K, EhbK [Methanobrevibacter smithii ATCC 35061] gi|222445363|ref|ZP_03607878.1| hypothetical protein METSMIALI_00991 [Methanobrevibacter smithii DSM 2375] gi|261350076|ref|ZP_05975493.1| polyferredoxin [Methanobrevibacter smithii DSM 2374] gi|148552143|gb|ABQ87271.1| energy-converting hydrogenase B, subunit K, EhbK [Methanobrevibacter smithii ATCC 35061] gi|222434928|gb|EEE42093.1| hypothetical protein METSMIALI_00991 [Methanobrevibacter smithii DSM 2375] gi|288860862|gb|EFC93160.1| polyferredoxin [Methanobrevibacter smithii DSM 2374] Length = 471 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 11/91 (12%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93 + P + + E ++ C+ C LC ICP AI +G Sbjct: 385 VYCPVNAIPRTTMHKKEIVDGFCFIEQQLCMHCGLCYDICPYDAINKNNGK--------- 435 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 +++D KC YCG C+ ACP +A + NF Sbjct: 436 --FEVDEDKCKYCGACKNACPANAFMFERNF 464 Score = 41.6 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++CI C+ C CP AI + + I+ C++CGLC + CP DAI Sbjct: 373 DLDKCILCENCGVYCPVNAIPRTTMHKKEIVDGFCF---IEQQLCMHCGLCYDICPYDAI 429 Query: 119 V 119 Sbjct: 430 N 430 Score = 40.1 bits (92), Expect = 0.10, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 11/77 (14%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R + + CI+C +C +CP +AIT+ G +D+ KCI C Sbjct: 333 RLFKVATWDGSITDECISCGICCEVCPKEAITLHRG-----------TISVDLDKCILCE 381 Query: 108 LCQEACPVDAIVEGPNF 124 C CPV+AI Sbjct: 382 NCGVYCPVNAIPRTTMH 398 Score = 38.9 bits (89), Expect = 0.24, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 10/60 (16%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C++C C +C A + +CI CG+C E CP +AI Sbjct: 317 FCVSCGNCVKVCENDARLF----------KVATWDGSITDECISCGICCEVCPKEAITLH 366 Score = 37.4 bits (85), Expect = 0.68, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 33/108 (30%), Gaps = 13/108 (12%) Query: 28 FKAKTTINYPFEKGSTSPRFRGEHALRRYPN-GEERCIACKLCEAICPAQAITIESGPRC 86 F + P KG R Y +RCI C CE CP I + Sbjct: 118 FIKSLSNALPTYKGVPHKPSETTEVTRSYFTTDYDRCIYCGRCEKYCPTGTIQVTLDRDE 177 Query: 87 HDGTRRTVRYDIDM------------IKCIYCGLCQEACPVDAIVEGP 122 + + D+ C C C +ACP +AI G Sbjct: 178 GICSDCGLCSDVCPNGAMNKNHIVNKSTCTLCLNCLKACPHNAISIGK 225 Score = 35.1 bits (79), Expect = 3.3, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 16/80 (20%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 Y +C C +C CP I IE G I C CG+C+EACP Sbjct: 56 YVVDRAKCSGCGMCMYNCPIDNIKIEDG--------------IVYGICSRCGVCEEACPS 101 Query: 116 DAIVEGPNFEFATETRQELY 135 ++ ++ F E + E Sbjct: 102 NSRIDS--FRLTEEKQLEFI 119 Score = 35.1 bits (79), Expect = 3.8, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 23/96 (23%), Gaps = 25/96 (26%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQ-------------------------AITIESGPR 85 + C C +CE CP+ Sbjct: 77 NIKIEDGIVYGICSRCGVCEEACPSNSRIDSFRLTEEKQLEFIKSLSNALPTYKGVPHKP 136 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 + D +CIYCG C++ CP I Sbjct: 137 SETTEVTRSYFTTDYDRCIYCGRCEKYCPTGTIQVT 172 Score = 33.5 bits (75), Expect = 9.2, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 10/72 (13%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 A+R C+ C LC CP+ AI I S Y +D KC CG+C Sbjct: 21 KAIRLINGKALSCLTCGLCYKNCPSNAIFINS----------YGGYVVDRAKCSGCGMCM 70 Query: 111 EACPVDAIVEGP 122 CP+D I Sbjct: 71 YNCPIDNIKIED 82 >gi|121534125|ref|ZP_01665950.1| hydrogenases, Fe-only [Thermosinus carboxydivorans Nor1] gi|121307228|gb|EAX48145.1| hydrogenases, Fe-only [Thermosinus carboxydivorans Nor1] Length = 574 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 3/68 (4%) Query: 59 GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQEACPV 115 +CI C C C Q + + S T ++ + + C YCG C CP Sbjct: 144 DPSKCILCGRCIRACSERQGVHVYSFVNRGFNTTVAPAFNQGLHQVACTYCGQCASVCPT 203 Query: 116 DAIVEGPN 123 AIVE + Sbjct: 204 GAIVEKDD 211 >gi|170728253|ref|YP_001762279.1| formate dehydrogenase subunit alpha [Shewanella woodyi ATCC 51908] gi|169813600|gb|ACA88184.1| formate dehydrogenase, alpha subunit [Shewanella woodyi ATCC 51908] Length = 924 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 3/64 (4%) Query: 59 GEERCIACKLCEAIC---PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 + CI C LC C + + ++ C+ CG C + CP Sbjct: 148 NLDACIQCNLCVRACREVQVNDVIGMANRGRDSAIIFDQSDEMAESSCVACGECVQVCPT 207 Query: 116 DAIV 119 DA++ Sbjct: 208 DALM 211 >gi|222053329|ref|YP_002535691.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32] gi|221562618|gb|ACM18590.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32] Length = 634 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 35/94 (37%), Gaps = 15/94 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 +RY F+ + + +K L + ++C AC C CPA+AI Sbjct: 533 TIRY-FREEYEAHIRHKKCPALSC----KELIAFHIQPDKCKACGTCFKQCPAEAIEG-- 585 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + + ID KC CG C + CP Sbjct: 586 --------GKKRIHIIDQDKCTKCGTCLDVCPKQ 611 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 12/44 (27%), Positives = 17/44 (38%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 I + + + I KC CG C + CP +AI G Sbjct: 544 HIRHKKCPALSCKELIAFHIQPDKCKACGTCFKQCPAEAIEGGK 587 >gi|303245642|ref|ZP_07331925.1| NADH dehydrogenase (quinone) [Desulfovibrio fructosovorans JJ] gi|302492905|gb|EFL52770.1| NADH dehydrogenase (quinone) [Desulfovibrio fructosovorans JJ] Length = 491 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 10/67 (14%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 AL Y +C C LC +CP + I+ + ID +CI CG C + Sbjct: 432 ALLTYTIDPAKCTGCGLCTRVCPVECISGTKKQP----------HTIDTTRCIKCGACYD 481 Query: 112 ACPVDAI 118 C D+I Sbjct: 482 KCKFDSI 488 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 17/44 (38%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 ++ + Y ID KC CGLC CPV+ I Sbjct: 419 HVDDKKCPAHVCTALLTYTIDPAKCTGCGLCTRVCPVECISGTK 462 >gi|227828793|ref|YP_002830573.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Sulfolobus islandicus M.14.25] gi|227460589|gb|ACP39275.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Sulfolobus islandicus M.14.25] Length = 87 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 25/75 (33%), Gaps = 11/75 (14%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G + + CI CK C CP I +G +D C CG+ Sbjct: 23 GAWRIVKPVVDYNNCIGCKACFMFCPESTIVPSNGKV-----------RVDYEYCKGCGV 71 Query: 109 CQEACPVDAIVEGPN 123 C CPV AI Sbjct: 72 CANVCPVKAISMVNE 86 >gi|218780441|ref|YP_002431759.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfatibacillum alkenivorans AK-01] gi|218761825|gb|ACL04291.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfatibacillum alkenivorans AK-01] Length = 301 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 12/69 (17%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 + R+ ++ CI C CE +CP I I + P CIYC +C Sbjct: 189 PKIMPRFAINQDECIQCGQCEDLCPVDGIDISADPPK------------IQDPCIYCFMC 236 Query: 110 QEACPVDAI 118 ++CP AI Sbjct: 237 AKSCPECAI 245 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 20/50 (40%) Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 P A + R+ I+ +CI CG C++ CPVD I Sbjct: 171 HIPDWAQKDRVNLSREIMPKIMPRFAINQDECIQCGQCEDLCPVDGIDIS 220 >gi|194292239|ref|YP_002008146.1| tugsten containing formate dehydrogenase alpha subunit; 2fe-2S ferredoxin n-term domain [Cupriavidus taiwanensis LMG 19424] gi|193226143|emb|CAQ72090.1| tugsten containing formate dehydrogenase alpha subunit; 2Fe-2S ferredoxin N-term domain [Cupriavidus taiwanensis LMG 19424] Length = 940 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 5/78 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID----MIKCIYCGLCQEACP 114 + CI C C C + + G + +D+D C+ CG C +ACP Sbjct: 154 NLDACIQCTRCLRACRDE-QVNDVIGLALRGDDARIVFDMDDPMGASTCVACGECVQACP 212 Query: 115 VDAIVEGPNFEFATETRQ 132 A++ + A +Q Sbjct: 213 TGALMPARDAALAVPDKQ 230 >gi|169335115|ref|ZP_02862308.1| hypothetical protein ANASTE_01522 [Anaerofustis stercorihominis DSM 17244] gi|169257853|gb|EDS71819.1| hypothetical protein ANASTE_01522 [Anaerofustis stercorihominis DSM 17244] Length = 1180 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 25/77 (32%), Gaps = 14/77 (18%) Query: 60 EERCIACKLCEAICPAQAITI-----ESGPRCHDGTRRTV-------RYDIDMIKCIYCG 107 E C+ C C +CP I E T + I + C CG Sbjct: 694 HENCMQCNWCSYVCPHGVIRPFVLDSEEAEGFEGTTVKMKGVKNNLFTMGISALDCSGCG 753 Query: 108 LCQEACPVD--AIVEGP 122 LC E CP A+ P Sbjct: 754 LCVEVCPARNKALQMVP 770 >gi|170288544|ref|YP_001738782.1| hydrogenase, Fe-only [Thermotoga sp. RQ2] gi|170176047|gb|ACB09099.1| hydrogenase, Fe-only [Thermotoga sp. RQ2] Length = 582 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 3/65 (4%) Query: 59 GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDI--DMIKCIYCGLCQEACPV 115 +CI C+ C C Q + I S T +D+ CI CG C CP Sbjct: 144 DLSKCIKCQRCVRACSELQGMHIYSMVERGHRTYPGTPFDMPVYETDCIGCGQCAAFCPT 203 Query: 116 DAIVE 120 AIVE Sbjct: 204 GAIVE 208 >gi|153812328|ref|ZP_01964996.1| hypothetical protein RUMOBE_02727 [Ruminococcus obeum ATCC 29174] gi|149831490|gb|EDM86577.1| hypothetical protein RUMOBE_02727 [Ruminococcus obeum ATCC 29174] Length = 1178 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 21/71 (29%), Gaps = 14/71 (19%) Query: 58 NGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTR---------RTVRYDIDMIKC 103 E CI C C +CP AI T E +G + C Sbjct: 689 WQPENCIQCNRCAYVCPHAAIRPVALTEEEAANAPEGMATLPMTGMKDYKFTMTVSAYDC 748 Query: 104 IYCGLCQEACP 114 CG C CP Sbjct: 749 TGCGSCANVCP 759 Score = 34.7 bits (78), Expect = 4.9, Method: Composition-based stats. Identities = 8/20 (40%), Positives = 8/20 (40%) Query: 99 DMIKCIYCGLCQEACPVDAI 118 CI C C CP AI Sbjct: 690 QPENCIQCNRCAYVCPHAAI 709 >gi|126734057|ref|ZP_01749804.1| formate dehydrogenase, alpha subunit [Roseobacter sp. CCS2] gi|126716923|gb|EBA13787.1| formate dehydrogenase, alpha subunit [Roseobacter sp. CCS2] Length = 922 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 5/64 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID----MIKCIYCGLCQEACP 114 + CI C LC C + + G +D+D C+ CG C +ACP Sbjct: 147 NLDACIQCGLCVRACR-EVQVNDVIGMAGRGGTAYPVFDMDDPMGASSCVACGECVQACP 205 Query: 115 VDAI 118 A+ Sbjct: 206 TGAL 209 >gi|110834471|ref|YP_693330.1| electron transport complex protein RnfB [Alcanivorax borkumensis SK2] gi|122959433|sp|Q0VP40|RNFB_ALCBS RecName: Full=Electron transport complex protein rnfB; AltName: Full=Nitrogen fixation protein rnfB gi|110647582|emb|CAL17058.1| electron transport complex protein rnfB, putative [Alcanivorax borkumensis SK2] Length = 194 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 10/64 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E+ CI C C CP AI + + + + + +C C LC E CPVD Sbjct: 110 YIREDECIGCTKCIQACPVDAIVGAAK----------LMHTVIVDECTGCDLCVEPCPVD 159 Query: 117 AIVE 120 I Sbjct: 160 CIDM 163 >gi|160878761|ref|YP_001557729.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [Clostridium phytofermentans ISDg] gi|160427427|gb|ABX40990.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Clostridium phytofermentans ISDg] Length = 1178 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 27/94 (28%), Gaps = 19/94 (20%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITI----------------ESGPRCHDGTR 91 RG ERCI C C ICP I G Sbjct: 675 RGIAVNVPEWI-VERCIQCNQCSYICPHSVIRPFLLNEEELAKAPDTFVTKGASGKAYEG 733 Query: 92 RTVRYDIDMIKCIYCGLCQEACPV--DAIVEGPN 123 + I + C CG C + CP A++ P Sbjct: 734 LQFKIQISPMDCTGCGNCADVCPAKGKALIMQPI 767 >gi|77920299|ref|YP_358114.1| NADH dehydrogenase I subunit F [Pelobacter carbinolicus DSM 2380] gi|77546382|gb|ABA89944.1| NADH dehydrogenase subunit F [Pelobacter carbinolicus DSM 2380] Length = 488 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 34/66 (51%), Gaps = 10/66 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 LR++ +++C+ C LC ICP + I+ + + ID KCI CG CQ+ Sbjct: 430 LRQFVILKDKCVGCTLCAKICPVECISGQ----------VKQPHVIDQSKCIKCGACQDK 479 Query: 113 CPVDAI 118 C +AI Sbjct: 480 CKFEAI 485 Score = 38.9 bits (89), Expect = 0.22, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 17/40 (42%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 I+ ++ I KC+ C LC + CPV+ I Sbjct: 416 HIKEKRCPAGVCTHLRQFVILKDKCVGCTLCAKICPVECI 455 >gi|83311089|ref|YP_421353.1| pyruvate-flavodoxin oxidoreductase [Magnetospirillum magneticum AMB-1] gi|82945930|dbj|BAE50794.1| Pyruvate-flavodoxin oxidoreductase [Magnetospirillum magneticum AMB-1] Length = 1198 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 21/83 (25%), Gaps = 16/83 (19%) Query: 48 RGEHALRRYPNGEERCIACKLCEAIC--------------PAQAITIESGPRCHDGTRRT 93 R A E CI C C +C A A + Sbjct: 682 RRNIAAEIPVWDEGPCIQCNKCALVCPHAAIRAKVAEPADMADAPASLKRMDWRSPEFKG 741 Query: 94 VRYDID--MIKCIYCGLCQEACP 114 Y I C C LC + CP Sbjct: 742 SAYIIQVAPEDCTGCTLCVKVCP 764 >gi|41018397|sp|Q50849|VHCB_METVO RecName: Full=Polyferredoxin protein vhcB gi|44795|emb|CAA43507.1| polyferredoxin [Methanococcus voltae PS] Length = 157 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 25/66 (37%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 E+C C C CP AI + + +R + C CG C ACP +A Sbjct: 27 WDREKCEYCGPCAIKCPNDAIMVVNPKGLELPSRAKTERANEFKMCDLCGTCVSACPTEA 86 Query: 118 IVEGPN 123 + G Sbjct: 87 LQMGKI 92 Score = 40.1 bits (92), Expect = 0.099, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 3/67 (4%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 N + C C C + CP +A+ + + + R + C CG C E CP + Sbjct: 67 NEFKMCDLCGTCVSACPTEALQM---GKIVHNEKEYDRIEFTPSLCDSCGACVEICPQNV 123 Query: 118 IVEGPNF 124 + + Sbjct: 124 LKLNEEY 130 >gi|113461203|ref|YP_719272.1| electron transport complex protein RnfB [Haemophilus somnus 129PT] gi|112823246|gb|ABI25335.1| electron transport complex protein [Haemophilus somnus 129PT] Length = 196 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 25/80 (31%), Gaps = 10/80 (12%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + F + + E+ CI C C CP AI + + I Sbjct: 93 PAGNFEKDPLPKVAFIDEDMCIGCTKCIQACPVDAIIGTNK----------AMHTIIADL 142 Query: 103 CIYCGLCQEACPVDAIVEGP 122 C C LC CP D I Sbjct: 143 CTGCELCVAPCPTDCISMIN 162 >gi|329766146|ref|ZP_08257705.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137417|gb|EGG41694.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Candidatus Nitrosoarchaeum limnia SFB1] Length = 99 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 1/68 (1%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C LC IC + G +R + +CI G C CP AI Sbjct: 12 QMCIGCALCVEICTTLGPDVLRVKPVE-GWKRGKAFVFYPERCISDGACIGVCPTKAIFW 70 Query: 121 GPNFEFAT 128 +F Sbjct: 71 MRPMDFTV 78 >gi|323139722|ref|ZP_08074761.1| ferredoxin [Methylocystis sp. ATCC 49242] gi|322395028|gb|EFX97590.1| ferredoxin [Methylocystis sp. ATCC 49242] Length = 243 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 30/132 (22%), Positives = 47/132 (35%), Gaps = 7/132 (5%) Query: 1 MRIFRCNVSFLFLKEF----VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRY 56 +R R V L+L +F + + L KA+ +P+ G + + + Sbjct: 101 LRRLRKGVLELYLSDFPESELEGGWSELHESLKAEGVETHPYGGGKNHFDAPVDQSNPYF 160 Query: 57 PNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 +CI C C C T +G +C+ CG C +AC Sbjct: 161 LFDPAKCIVCSRCVRACAEVQGTFAITIAGRGFESKVVAGQEQPFFESECVSCGACVQAC 220 Query: 114 PVDAIVEGPNFE 125 P A+VE FE Sbjct: 221 PSHALVEKSLFE 232 >gi|315923881|ref|ZP_07920109.1| anaerobic sulfite reductase subunit C [Pseudoramibacter alactolyticus ATCC 23263] gi|315622721|gb|EFV02674.1| anaerobic sulfite reductase subunit C [Pseudoramibacter alactolyticus ATCC 23263] Length = 325 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 22/81 (27%), Gaps = 8/81 (9%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 G + RC++C+ C C + + Sbjct: 151 KVRMHDFGVMGMTLPQFDASRCVSCQACVKRCR--------KKSTGALSFDHFTPVRNHE 202 Query: 102 KCIYCGLCQEACPVDAIVEGP 122 KCI CG C ACP A Sbjct: 203 KCIGCGECVLACPTRAWTRSD 223 >gi|312887264|ref|ZP_07746867.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Mucilaginibacter paludis DSM 18603] gi|311300222|gb|EFQ77288.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Mucilaginibacter paludis DSM 18603] Length = 1191 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 21/74 (28%), Gaps = 16/74 (21%) Query: 58 NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY--DIDMI 101 + CI C C +CP A + RY + Sbjct: 692 WDADNCIQCGNCSFVCPHGVIRSKFYHQDYLADAPEDFQSSPINARGFPQTRYTLQVYAE 751 Query: 102 KCIYCGLCQEACPV 115 C C LC E CPV Sbjct: 752 DCTGCNLCAEVCPV 765 >gi|304436735|ref|ZP_07396703.1| pyruvate:ferredoxin oxidoreductase [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304370215|gb|EFM23872.1| pyruvate:ferredoxin oxidoreductase [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 1175 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 26/84 (30%), Gaps = 14/84 (16%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQ--------------AITIESGPRCHDGTRRTVRYD 97 A+ E+CI C C +CP A + + Sbjct: 680 AISVPVWRPEKCIQCNQCSFVCPHATIRPILTTDEELAAAPEGMQSVKSRPAKGMNLTIA 739 Query: 98 IDMIKCIYCGLCQEACPVDAIVEG 121 + + C+ CG C + CP A+ Sbjct: 740 VSTLDCLGCGNCAQVCPGKALDMT 763 >gi|302335612|ref|YP_003800819.1| hydrogenase, Fe-only [Olsenella uli DSM 7084] gi|301319452|gb|ADK67939.1| hydrogenase, Fe-only [Olsenella uli DSM 7084] Length = 587 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 23/70 (32%), Gaps = 3/70 (4%) Query: 59 GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115 +CI C C +C QA I V C YCG C CP Sbjct: 141 ENHKCIDCMRCVQVCDKVQASRIWDATSRSTHRTVNVVGGRSFDDVDCTYCGQCITHCPT 200 Query: 116 DAIVEGPNFE 125 A+ E + E Sbjct: 201 GALRERDDTE 210 >gi|291545759|emb|CBL18867.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [Ruminococcus sp. SR1/5] Length = 1181 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 32/101 (31%), Gaps = 17/101 (16%) Query: 28 FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA-----ITIES 82 FK P G+ + RG + CI C C +CP A +T + Sbjct: 662 FKDYVDGTTP--SGTAAYEKRGIAVNVPVWV-PDNCIQCNRCAYVCPHAAIRPVAMTADE 718 Query: 83 GPRCHDGTR---------RTVRYDIDMIKCIYCGLCQEACP 114 +G + T + + C CG C CP Sbjct: 719 TANAPEGIKTLPLTGMKDYTFTMTVSALDCTGCGSCANVCP 759 Score = 34.7 bits (78), Expect = 5.0, Method: Composition-based stats. Identities = 8/19 (42%), Positives = 8/19 (42%) Query: 100 MIKCIYCGLCQEACPVDAI 118 CI C C CP AI Sbjct: 691 PDNCIQCNRCAYVCPHAAI 709 >gi|238926214|ref|ZP_04657974.1| pyruvate synthase [Selenomonas flueggei ATCC 43531] gi|238885894|gb|EEQ49532.1| pyruvate synthase [Selenomonas flueggei ATCC 43531] Length = 1175 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/84 (19%), Positives = 26/84 (30%), Gaps = 14/84 (16%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQ--------------AITIESGPRCHDGTRRTVRYD 97 A+ E+CI C C +CP A + + Sbjct: 680 AISVPVWRPEKCIQCNQCSFVCPHATIRPILTTDEELAAAPEGMQSVKSRPAKGMNLTIA 739 Query: 98 IDMIKCIYCGLCQEACPVDAIVEG 121 + + C+ CG C + CP A+ Sbjct: 740 VSTLDCLGCGNCAQVCPGKALDMT 763 >gi|167761283|ref|ZP_02433410.1| hypothetical protein CLOSCI_03688 [Clostridium scindens ATCC 35704] gi|167660949|gb|EDS05079.1| hypothetical protein CLOSCI_03688 [Clostridium scindens ATCC 35704] Length = 604 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 11/70 (15%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 Y + C C+ C AI IE G I+ C CG+C + C Sbjct: 546 YHVAADSCTFCRQCIRELGCPAIVIEDGKAA-----------IEPSLCSGCGICAQVCKF 594 Query: 116 DAIVEGPNFE 125 +AI E + E Sbjct: 595 NAIQEVDHDE 604 >gi|114776889|ref|ZP_01451932.1| pyruvate ferredoxin/flavodoxin oxidoreductase family protein [Mariprofundus ferrooxydans PV-1] gi|114552975|gb|EAU55406.1| pyruvate ferredoxin/flavodoxin oxidoreductase family protein [Mariprofundus ferrooxydans PV-1] Length = 1198 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 35/108 (32%), Gaps = 23/108 (21%) Query: 57 PNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY--DIDM 100 + CI C C +CP A RY +I + Sbjct: 696 KWEPDVCIQCGNCSFVCPHSVIRAKFYHEDHLDNAPEGFPSAPISARGFPETRYTLEIYL 755 Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD-KERLLNNGDR 147 C C +C ACP + + AT+TR+ + K L+ G + Sbjct: 756 EDCTGCEMCVNACPAF------DPDDATQTRKAINMTAKPALMEQGLK 797 >gi|119719845|ref|YP_920340.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Thermofilum pendens Hrk 5] gi|119524965|gb|ABL78337.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermofilum pendens Hrk 5] Length = 158 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 9/57 (15%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 I C +CE+ CP +AI +E R ID +C CG+C CP A+ Sbjct: 39 IPCNVCESACPVKAIRVEG---------LRGRPRIDWDRCTGCGVCVGVCPGQAMFL 86 >gi|70606479|ref|YP_255349.1| putative ATPase RIL [Sulfolobus acidocaldarius DSM 639] gi|68567127|gb|AAY80056.1| RNase L inhibitor-like protein [Sulfolobus acidocaldarius DSM 639] Length = 604 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 24/71 (33%), Gaps = 2/71 (2%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESG-PRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 +R + C C C A +SG + I CI CG+C + Sbjct: 1 MRVAVINYDYCKP-DKCRLECIAFCPINKSGSKAIELSEIVKGKPIIYEETCIGCGICIK 59 Query: 112 ACPVDAIVEGP 122 CP DAI Sbjct: 60 KCPFDAIDIVN 70 >gi|15668691|ref|NP_247490.1| polyferredoxin MvhB [Methanocaldococcus jannaschii DSM 2661] gi|48474788|sp|Q57934|Y514_METJA RecName: Full=Uncharacterized polyferredoxin-like protein MJ0514 gi|1591217|gb|AAB98503.1| polyferredoxin (mvhB) [Methanocaldococcus jannaschii DSM 2661] Length = 250 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 10/71 (14%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 + L++Y E CI C +C CP AI R ++++ C+ CG Sbjct: 118 HRKIRLKKYELDENTCIKCGICARFCPTNAIKAV----------RRKSIEVNLDLCMGCG 167 Query: 108 LCQEACPVDAI 118 C E CP I Sbjct: 168 ACAEVCPKKCI 178 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 11/67 (16%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 R + C+ C +C CP AI + I+ KCI CG C + C Sbjct: 191 RDIEVDKNLCVGCLVCIEECPINAIDQDGDKV-----------KINKDKCILCGRCVDVC 239 Query: 114 PVDAIVE 120 P +AI Sbjct: 240 PTNAIKM 246 Score = 40.5 bits (93), Expect = 0.073, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 15/73 (20%) Query: 61 ERCIACKLCEAICPAQA---------------ITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++C+ C++C CP A R +Y++D CI Sbjct: 76 DKCVKCEICAQTCPVGAIYVIEGRAEIEDSEVHYTIKEKSIPHRKIRLKKYELDENTCIK 135 Query: 106 CGLCQEACPVDAI 118 CG+C CP +AI Sbjct: 136 CGICARFCPTNAI 148 Score = 38.9 bits (89), Expect = 0.21, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 9/63 (14%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E +CI C LC CP AI + I KC+ C +C + CPV Sbjct: 41 YINETKCIRCNLCYKECPVDAIEKAKVKKSA---------KIIEDKCVKCEICAQTCPVG 91 Query: 117 AIV 119 AI Sbjct: 92 AIY 94 >gi|46580179|ref|YP_010987.1| periplasmic [Fe] hydrogenase large subunit [Desulfovibrio vulgaris str. Hildenborough] gi|120602431|ref|YP_966831.1| hydrogenases, Fe-only [Desulfovibrio vulgaris DP4] gi|130070|sp|P07598|PHFL_DESVH RecName: Full=Periplasmic [Fe] hydrogenase large subunit; AltName: Full=Fe hydrogenlyase gi|290560604|pdb|1HFE|L Chain L, 1.6 A Resolution Structure Of The Fe-Only Hydrogenase From Desulfovibrio Desulfuricans gi|290560605|pdb|1HFE|M Chain M, 1.6 A Resolution Structure Of The Fe-Only Hydrogenase From Desulfovibrio Desulfuricans gi|40830|emb|CAA26266.1| unnamed protein product [Desulfovibrio vulgaris str. Hildenborough] gi|46449596|gb|AAS96246.1| periplasmic [Fe] hydrogenase, large subunit [Desulfovibrio vulgaris str. Hildenborough] gi|120562660|gb|ABM28404.1| hydrogenase, Fe-only [Desulfovibrio vulgaris DP4] gi|311233830|gb|ADP86684.1| hydrogenase, Fe-only [Desulfovibrio vulgaris RCH1] Length = 421 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 27/83 (32%), Gaps = 9/83 (10%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 + T L E +CI C C CP AI E G Sbjct: 10 EYEMHTPDPKADPDKLHFVQIDEAKCIGCDTCSQYCPTAAIFGEMGEPHSIPH------- 62 Query: 98 IDMIKCIYCGLCQEACPVDAIVE 120 + CI CG C CP +AI E Sbjct: 63 --IEACINCGQCLTHCPENAIYE 83 >gi|326422552|gb|EGD71947.1| ABC transporter related protein [Candidatus Parvarchaeum acidophilus ARMAN-5_'5-way FS'] Length = 572 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 26/70 (37%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 +R E C A C IC + G + R + I CI CG+C + Sbjct: 1 MRVAVIKESECEAPDNCNYICAEVCPRVREGAKETVYARENGKAAITESLCISCGICVKR 60 Query: 113 CPVDAIVEGP 122 CP DAI Sbjct: 61 CPFDAIKIIN 70 >gi|313677680|ref|YP_004055676.1| hypothetical protein Ftrac_3598 [Marivirga tractuosa DSM 4126] gi|312944378|gb|ADR23568.1| hypothetical protein Ftrac_3598 [Marivirga tractuosa DSM 4126] Length = 597 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 27/88 (30%), Gaps = 10/88 (11%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R + R NG +CI+C C C R +I C+ CG Sbjct: 511 RFKSRFRITTNG-GQCISCGNCSTYCEMGIDVRWYAQRGQ---------NIIRSSCVGCG 560 Query: 108 LCQEACPVDAIVEGPNFEFATETRQELY 135 +C CP + E + L Sbjct: 561 VCSSVCPRGVLNLENRDEDGRFNQPSLI 588 >gi|302343580|ref|YP_003808109.1| FAD dependent oxidoreductase [Desulfarculus baarsii DSM 2075] gi|301640193|gb|ADK85515.1| FAD dependent oxidoreductase [Desulfarculus baarsii DSM 2075] Length = 1011 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 10/61 (16%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E C AC +C CP I + ID KC+ CG+C CP AI Sbjct: 942 EMCAACLVCVRACPIGVPFINADGYS----------QIDPEKCLGCGICAAECPAKAIQL 991 Query: 121 G 121 Sbjct: 992 Q 992 >gi|301060755|ref|ZP_07201570.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] gi|300445152|gb|EFK09102.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] Length = 254 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 10/64 (15%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + Y E+C AC +C CP AI + + + ID KCI CG C Sbjct: 170 EEVVSYYIDPEKCKACMICARSCPVDAIVG----------GKNLIHVIDQEKCIKCGTCF 219 Query: 111 EACP 114 EACP Sbjct: 220 EACP 223 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 16/28 (57%), Positives = 18/28 (64%) Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPN 123 Y ID KC C +C +CPVDAIV G N Sbjct: 175 YYIDPEKCKACMICARSCPVDAIVGGKN 202 >gi|301061446|ref|ZP_07202216.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] gi|300444485|gb|EFK08480.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] Length = 912 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 30/81 (37%), Gaps = 12/81 (14%) Query: 54 RRYPNGEERCIACKLCEAICP---AQAITIESGPRCHDGTRR----TVRYDIDMIKCIY- 105 ++CIAC C CP A G R + ++Y ID CI Sbjct: 6 HPRYVDMDKCIACGACAEKCPKKVDNAYDAGLGKRKAIYVKYAQAVPLKYAIDPEYCIKL 65 Query: 106 ----CGLCQEACPVDAIVEGP 122 CG C++ CP DAI Sbjct: 66 TKGKCGNCEKICPADAINYED 86 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 10/69 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +C +C +C +ICP A + +T + +I+ C CGLC +C A+ Sbjct: 845 NPNKCSSCTVCVSICPYSAPRMNE---------KTGKAEIESTLCKGCGLCVASCRSGAL 895 Query: 119 VEGPNFEFA 127 FE + Sbjct: 896 HL-KGFETS 903 >gi|295102158|emb|CBK99703.1| hypothetical protein FP2_23730 [Faecalibacterium prausnitzii L2-6] Length = 293 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 21/87 (24%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L + + +C++C C C V + +CI CG+C A Sbjct: 219 LFQMKVDKSKCVSCGKCARACKMD---------------VDVTKTPNHTECIRCGMCIRA 263 Query: 113 CPVDAIVE------GPNFEFATETRQE 133 CP +A+ G E A R+ Sbjct: 264 CPTNAVCFRYGFGSGKEKENAATLREN 290 >gi|294673994|ref|YP_003574610.1| iron-sulfur cluster-binding protein [Prevotella ruminicola 23] gi|294474248|gb|ADE83637.1| iron-sulfur cluster-binding protein [Prevotella ruminicola 23] Length = 274 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 16/85 (18%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 +++ E+ CI C C +CP I I +C C C C Sbjct: 200 KKFTVDEDVCIKCGKCIKVCPVDNIQGTPPE------------WIHNGRCTSCLACYHYC 247 Query: 114 PVDAIVEGPNFEFATETRQELYYDK 138 PV AI G T R + Y++K Sbjct: 248 PVHAINFGKI----TRKRDQYYFNK 268 >gi|257790263|ref|YP_003180869.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Eggerthella lenta DSM 2243] gi|325830362|ref|ZP_08163819.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1] gi|257474160|gb|ACV54480.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella lenta DSM 2243] gi|325487829|gb|EGC90267.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1] Length = 394 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 11/53 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C +C + I+ + I+ +CI CG C CP A+ Sbjct: 36 CMKCADVCTSGCISYDDNELV-----------IEPERCIGCGTCATVCPTCAL 77 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 6/65 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+C +C++C CP AI +G G + C+ C C + CP A+ Sbjct: 291 DPEKCSSCQMCATFCPTGAIAKYAGEDGSIG------VTHRPVDCVKCRCCTDICPEGAL 344 Query: 119 VEGPN 123 Sbjct: 345 ELSDE 349 >gi|220904427|ref|YP_002479739.1| glutamate synthase alpha subunit domain-containing protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868726|gb|ACL49061.1| glutamate synthase alpha subunit domain protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 381 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 7/68 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 G C CK+C CP +AIT + V Y D C CG+C CP Sbjct: 317 GAGACRDCKICLKFCPQKAITRKQTDD-------NVAYGADSGCCTGCGICAAVCPCGIW 369 Query: 119 VEGPNFEF 126 N + Sbjct: 370 HMHSNRDM 377 >gi|189218638|ref|YP_001939279.1| dihydroorotate dehydrogenase fused to Fe-S-cluster domain [Methylacidiphilum infernorum V4] gi|189185496|gb|ACD82681.1| Dihydroorotate dehydrogenase fused to Fe-S-cluster domain [Methylacidiphilum infernorum V4] Length = 387 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 50/162 (30%), Gaps = 26/162 (16%) Query: 4 FRCNVSFLFLKE---------FVGAFFLC------LRYFFKAKTTINYPFEKGS-----T 43 +R V FL L + F + L+ + ++K + +G Sbjct: 215 WRDGVEFLLLGATSLQLCTSVMLKGFRIAEDLLSGLKNWMRSKGFRSIAEFRGKSLSHLV 274 Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-DIDMIK 102 ++CI C LC C A D V Y + Sbjct: 275 PFSKLDPLFKEVAKINPQKCIRCLLCYVGCRDSAYQCIEVDNKLDLFSNPVNYPHVREAD 334 Query: 103 CIYCGLCQEACPVD-AIVEGPNFEFATETR--QELYYDKERL 141 C+ C LC+ CPVD I P A E R E KE L Sbjct: 335 CVGCSLCRHLCPVDSCIEMIP--AQAEENRPAGEKIPTKEEL 374 >gi|164688323|ref|ZP_02212351.1| hypothetical protein CLOBAR_01968 [Clostridium bartlettii DSM 16795] gi|164602736|gb|EDQ96201.1| hypothetical protein CLOBAR_01968 [Clostridium bartlettii DSM 16795] Length = 421 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 6/67 (8%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E C+ C CE CP AI++ + + DID C+ CG+C C +I Sbjct: 288 NDESCVKCGKCEKACPIDAISLIKDENGN------KKVDIDYDVCLGCGVCARNCHKGSI 341 Query: 119 VEGPNFE 125 + E Sbjct: 342 ILKRRQE 348 >gi|161529273|ref|YP_001583099.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Nitrosopumilus maritimus SCM1] gi|160340574|gb|ABX13661.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Nitrosopumilus maritimus SCM1] Length = 99 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 1/68 (1%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C LC IC + G +R + +CI G C CP AI Sbjct: 12 QMCIGCALCVEICTTLGPDVLRVKPVE-GWKRGKAFVFYPERCISDGACIGVCPTKAIFW 70 Query: 121 GPNFEFAT 128 +F Sbjct: 71 MRPMDFTV 78 >gi|152970517|ref|YP_001335626.1| electron transport complex protein RnfB [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238895008|ref|YP_002919742.1| electron transport complex protein RnfB [Klebsiella pneumoniae NTUH-K2044] gi|262044608|ref|ZP_06017663.1| electron transport complex [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330015741|ref|ZP_08308242.1| electron transport complex, RnfABCDGE type, B subunit [Klebsiella sp. MS 92-3] gi|150955366|gb|ABR77396.1| electron transport complex protein RnfB [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238547324|dbj|BAH63675.1| electron transport complex protein [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259038009|gb|EEW39225.1| electron transport complex [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328530799|gb|EGF57656.1| electron transport complex, RnfABCDGE type, B subunit [Klebsiella sp. MS 92-3] Length = 192 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 23/76 (30%), Gaps = 10/76 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI + + + C C LC CP I Sbjct: 113 DEPNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCNLCVAPCPTQCI 162 Query: 119 VEGPNFEFATETRQEL 134 P + +L Sbjct: 163 SLVPVATTPETWKWDL 178 Score = 35.1 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C C +ACPVDAI Sbjct: 112 IDEPNCIGCTKCIQACPVDAI 132 >gi|149921106|ref|ZP_01909564.1| cyclic nucleotide-binding domain (cNMP-BD) protein [Plesiocystis pacifica SIR-1] gi|149817993|gb|EDM77452.1| cyclic nucleotide-binding domain (cNMP-BD) protein [Plesiocystis pacifica SIR-1] Length = 820 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 24/74 (32%), Gaps = 12/74 (16%) Query: 60 EERCIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 C CK C CP A+ + I C CG C +ACP + Sbjct: 364 PNSCQHCKNPSCMLDCPTGAVGRDPEGEVF----------IREELCTGCGACAKACPWEN 413 Query: 118 IVEGPNFEFATETR 131 I P + + R Sbjct: 414 IRMAPRGPSSAQQR 427 Score = 37.4 bits (85), Expect = 0.74, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 23/76 (30%), Gaps = 20/76 (26%) Query: 63 CIACKLCEAICPAQ-----------AITIESGPRCHDGTRRTV----RYDIDMIKCIYCG 107 C C C CP + A P R+ + + KC C Sbjct: 399 CTGCGACAKACPWENIRMAPRGPSSAQQRWGEPLREAAERKGMDLLAMFPEVATKCDSCR 458 Query: 108 L-----CQEACPVDAI 118 C ++CP +AI Sbjct: 459 AYEAPACVQSCPTEAI 474 >gi|170741268|ref|YP_001769923.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methylobacterium sp. 4-46] gi|168195542|gb|ACA17489.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methylobacterium sp. 4-46] Length = 670 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 23/67 (34%), Gaps = 9/67 (13%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C C CP A++ + C+ CGLC CP D I P Sbjct: 524 CTLCHACVGACPTGALSDDPDRPLLS---------FSESLCVQCGLCAATCPEDVITLEP 574 Query: 123 NFEFATE 129 +FA Sbjct: 575 RLDFAAW 581 Score = 37.8 bits (86), Expect = 0.59, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 16/54 (29%), Gaps = 11/54 (20%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 C C +CP AI +D C CG C CP A Sbjct: 281 TGCSRCLDVCPTGAIAPAGD-----------HVAVDPFVCAGCGSCASVCPTGA 323 >gi|187477591|ref|YP_785615.1| ferredoxin [Bordetella avium 197N] gi|115422177|emb|CAJ48701.1| ferredoxin [Bordetella avium 197N] Length = 213 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 24/70 (34%), Gaps = 10/70 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L E CI C LC CP AI + + + C C LC Sbjct: 75 LLVARIDEAHCIGCTLCIRACPVDAIAGANK----------RMHTVLADLCSGCDLCVAP 124 Query: 113 CPVDAIVEGP 122 CPVD I P Sbjct: 125 CPVDCIDMVP 134 >gi|160878253|ref|YP_001557221.1| putative PAS/PAC sensor protein [Clostridium phytofermentans ISDg] gi|160426919|gb|ABX40482.1| putative PAS/PAC sensor protein [Clostridium phytofermentans ISDg] Length = 577 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 11/64 (17%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 +C C C C +AIT++ I KCI CG C E CP +A Sbjct: 10 KCKNCYKCVRNCDVKAITVKDAQAY-----------IMNDKCILCGHCLEVCPQNAKTLI 58 Query: 122 PNFE 125 + E Sbjct: 59 SDLE 62 >gi|150015671|ref|YP_001307925.1| sulfite reductase, subunit C [Clostridium beijerinckii NCIMB 8052] gi|149902136|gb|ABR32969.1| Sulfite reductase, Subunit C [Clostridium beijerinckii NCIMB 8052] Length = 321 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 28/90 (31%), Gaps = 12/90 (13%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + G + +RC++C C C + G + Sbjct: 145 CPNDCIKARTHDFGIIGMTEPQYNIDRCVSCMACVKAC----------KKKSVGALEAIN 194 Query: 96 YDI--DMIKCIYCGLCQEACPVDAIVEGPN 123 Y I + KCI CG C ACP A Sbjct: 195 YKIVRNKEKCIGCGECANACPTGAWTRSKE 224 >gi|114319975|ref|YP_741658.1| electron transport complex protein RnfC [Alkalilimnicola ehrlichii MLHE-1] gi|114226369|gb|ABI56168.1| electron transport complex, RnfABCDGE type, C subunit [Alkalilimnicola ehrlichii MLHE-1] Length = 515 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 34/99 (34%), Gaps = 19/99 (19%) Query: 62 RCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 CI C C CP Q I + R ++ +D CI CG C CP Sbjct: 377 PCIRCGACAEACPERLAPQQIYWHTRARDYEHADDWGVFD-----CIECGACAWVCPSH- 430 Query: 118 IVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNI 156 I F A + KE+ ++ +E+ R Sbjct: 431 IPLVQYFRHA----KGAIAQKEQ-----EKARAELARRR 460 >gi|307718154|ref|YP_003873686.1| transporter [Spirochaeta thermophila DSM 6192] gi|306531879|gb|ADN01413.1| transporter [Spirochaeta thermophila DSM 6192] Length = 440 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 28/75 (37%), Gaps = 3/75 (4%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 GEE CI C C +CP G R + CI C LC CP AI Sbjct: 363 GEEPCIHCSRCAQVCPRGLEPWLLHEALGRGDGRLLTGGAIEG-CIGCNLCSFVCP-SAI 420 Query: 119 VEGPNF-EFATETRQ 132 F ++ + R+ Sbjct: 421 PLADRFRDYLEKERE 435 >gi|291534171|emb|CBL07284.1| Glutamate synthase domain 2 [Megamonas hypermegale ART12/1] Length = 543 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 34/96 (35%), Gaps = 18/96 (18%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIE---------SGPRCHDGTRRTVRYDIDMIK-- 102 + +RC C C A C QAI + G I +K Sbjct: 16 WKIEYDMDRCTMCGSCLATCTFQAIKADVIRIDKTTSDGLFPDPKHTHKAIPVIKQVKTL 75 Query: 103 ---CIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 C+ CG+C++ CP AI N +TR+ L Sbjct: 76 ANACVGCGMCEKVCPNGAIRPVRN----ADTRKTLL 107 >gi|317131567|ref|YP_004090881.1| cobyrinic acid ac-diamide synthase [Ethanoligenens harbinense YUAN-3] gi|315469546|gb|ADU26150.1| cobyrinic acid ac-diamide synthase [Ethanoligenens harbinense YUAN-3] Length = 291 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 26/80 (32%), Gaps = 23/80 (28%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 P EK + L + + C C CEA+C AI Sbjct: 49 KVPEEKP--------FYGLNKAVKDDTVCTNCGKCEALCRFGAIENGK------------ 88 Query: 95 RYDIDMIKCIYCGLCQEACP 114 ++ C CG+C+ CP Sbjct: 89 ---VNPYACEGCGVCEAVCP 105 >gi|227326452|ref|ZP_03830476.1| electron transport complex protein RnfB [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 192 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 22/73 (30%), Gaps = 10/73 (13%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 A E CI C C CP AI + + + C C LC Sbjct: 105 PARHVAWIDESNCIGCTKCIQACPVDAIIGSTK----------AVHTVVSDLCTGCDLCV 154 Query: 111 EACPVDAIVEGPN 123 CP D I P Sbjct: 155 SPCPTDCIELRPI 167 >gi|261856373|ref|YP_003263656.1| electron transport complex, RnfABCDGE type subunit beta [Halothiobacillus neapolitanus c2] gi|261836842|gb|ACX96609.1| electron transport complex, RnfABCDGE type, B subunit [Halothiobacillus neapolitanus c2] Length = 192 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 23/64 (35%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI + + + +C C LC CPVD I Sbjct: 110 DESVCIGCTKCIQACPVDAILGAAKQ----------MHTVIAAECTGCELCVAPCPVDCI 159 Query: 119 VEGP 122 P Sbjct: 160 DMVP 163 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C C +ACPVDAI Sbjct: 109 IDESVCIGCTKCIQACPVDAI 129 >gi|164686664|ref|ZP_02210692.1| hypothetical protein CLOBAR_00259 [Clostridium bartlettii DSM 16795] gi|164604054|gb|EDQ97519.1| hypothetical protein CLOBAR_00259 [Clostridium bartlettii DSM 16795] Length = 898 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 23/87 (26%), Gaps = 5/87 (5%) Query: 55 RYPNGEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + CI C C C AI ID C CG C Sbjct: 140 FFTYNPNLCILCHRCVNTCHKIVGRGAIDTMERGFDSTIGTPFHVDWIDTT-CESCGNCV 198 Query: 111 EACPVDAIVEGPNFEFATETRQELYYD 137 +ACP A+ E+ + Sbjct: 199 QACPTGALTMKRRKEYRPYQVDKKVLT 225 >gi|188579565|ref|YP_001923010.1| formate dehydrogenase, alpha subunit [Methylobacterium populi BJ001] gi|179343063|gb|ACB78475.1| formate dehydrogenase, alpha subunit [Methylobacterium populi BJ001] Length = 989 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 32/87 (36%), Gaps = 3/87 (3%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRY 96 + + R+ + + + CI C LC C Q + ++ + Sbjct: 188 ESRFPAAERWSSDVSHPAMSVNLDACIQCNLCVRACREVQVNDVIGMAYRSADSKVVFDF 247 Query: 97 DIDM--IKCIYCGLCQEACPVDAIVEG 121 D M C+ CG C +ACP A++ Sbjct: 248 DDPMGASTCVACGECVQACPTGALMPS 274 >gi|82734602|gb|ABB89709.1| trichloroethene reductive dehalogenase [Dehalococcoides sp. Owls-PCE] gi|82734608|gb|ABB89713.1| trichloroethene reductive dehalogenase [Dehalococcoides sp. CH-PCE] Length = 526 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 3/60 (5%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID---MIKCIYCGLCQEACPVD 116 E C C +C CP QAI+ E Y+ KCI C C+ CP Sbjct: 406 REFCKTCGICAEHCPTQAISHEGPRYDSPHWDCVSGYEGWHLDHHKCINCTNCESFCPFF 465 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%) Query: 103 CIYCGLCQEACPVDAI-VEGPNFE 125 C CG+C E CP AI EGP ++ Sbjct: 409 CKTCGICAEHCPTQAISHEGPRYD 432 >gi|82734605|gb|ABB89711.1| trichloroethene reductive dehalogenase [Dehalococcoides sp. LH-PCE] Length = 526 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 3/60 (5%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID---MIKCIYCGLCQEACPVD 116 E C C +C CP QAI+ E Y+ KCI C C+ CP Sbjct: 406 REFCKTCGICAEHCPTQAISHEGPRYDSPHWDCVSGYEGWHLDHHKCINCTNCESFCPFF 465 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%) Query: 103 CIYCGLCQEACPVDAI-VEGPNFE 125 C CG+C E CP AI EGP ++ Sbjct: 409 CKTCGICAEHCPTQAISHEGPRYD 432 >gi|94271958|ref|ZP_01292042.1| 4Fe-4S ferredoxin, iron-sulfur binding:Molybdopterin oxidoreductase Fe4S4 region [delta proteobacterium MLMS-1] gi|93450290|gb|EAT01543.1| 4Fe-4S ferredoxin, iron-sulfur binding:Molybdopterin oxidoreductase Fe4S4 region [delta proteobacterium MLMS-1] Length = 608 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 1/81 (1%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 T+PR+ + +CI C C C +A+ I +G G + + M Sbjct: 388 TTPRYARQEEHPTISVDLNKCIYCHKCANSCEYRALEITAGSFDEQGRAQDLSLT-FMEH 446 Query: 103 CIYCGLCQEACPVDAIVEGPN 123 C+ CG C + C A+ + Sbjct: 447 CVSCGKCVDNCSTGALNKKDQ 467 Score = 35.5 bits (80), Expect = 2.6, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 11/96 (11%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKL-----CEAICPAQAITIESGPRCHDGTR 91 P R + + ERC++C C+ A A ++ T Sbjct: 331 PERAIQDFNEVRLGFTEQMAKSEAERCLSCGCTAFDRCDLKEQAIAHGVDPNKTGMGTTP 390 Query: 92 RTVRYDIDM------IKCIYCGLCQEACPVDAIVEG 121 R R + KCIYC C +C A+ Sbjct: 391 RYARQEEHPTISVDLNKCIYCHKCANSCEYRALEIT 426 >gi|58616427|ref|YP_195556.1| 2-ketoglutarate: NADP oxidoreductase, gamma subunit [Azoarcus sp. EbN1] gi|56315889|emb|CAI10532.1| 2-ketoglutarate: NADP oxidoreductase, gamma subunit [Aromatoleum aromaticum EbN1] Length = 595 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 33/105 (31%), Gaps = 20/105 (19%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR------------ 85 E+ + + R + CI C C ICP++ IT + Sbjct: 476 DERQALAEAERCLNCDVHTVFSAPACIECNACVDICPSECITFTADGEETELRARLTAPA 535 Query: 86 --------CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 DG + D C++CG+C E CP A Sbjct: 536 TNPAQPLYVADGVKSGRIMVKDENLCLHCGMCSERCPTAAWDMQK 580 >gi|327400963|ref|YP_004341802.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein [Archaeoglobus veneficus SNP6] gi|327316471|gb|AEA47087.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Archaeoglobus veneficus SNP6] Length = 435 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 27/74 (36%), Gaps = 2/74 (2%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 F A E+C C +C + C A + ID KC Sbjct: 153 EDFPKADARGSIRIDTEKCNLCGICASFC--DAFKLVDKDVKPGNLTPFAEILIDEEKCD 210 Query: 105 YCGLCQEACPVDAI 118 YCGLC + CP +AI Sbjct: 211 YCGLCVKLCPEEAI 224 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 1/60 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 EE+C C LC +CP +AI +ES R + +CI+CG C CP +A+ Sbjct: 205 DEEKCDYCGLCVKLCPEEAIEVESSKVIEADVERVAEV-VFTDRCIHCGYCVAVCPYEAV 263 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 29/83 (34%), Gaps = 3/83 (3%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 K F A C C +C A CP A + ++ + Sbjct: 62 VKAIEFAGFEALAAGMPLIIDHLSCAYCGICYAFCPFNAFEFRINGEIVEKSKLPLSLGG 121 Query: 99 DMIK---CIYCGLCQEACPVDAI 118 + K C+ C LC E CPVDAI Sbjct: 122 KIEKLENCVDCMLCVEVCPVDAI 144 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 35/96 (36%), Gaps = 4/96 (4%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + G + E LR C CK C CP +AI G Sbjct: 23 IPEQLGLLVFKQHFEGELRELIFNPALCNGCKFCVYACPVKAIEFAGFEALAAGMPLI-- 80 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 ID + C YCG+C CP +A N E +++ Sbjct: 81 --IDHLSCAYCGICYAFCPFNAFEFRINGEIVEKSK 114 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 2/55 (3%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR--YDIDMIKCIYCGLCQEAC 113 E C+ C LC +CP AI R D + R ID KC CG+C C Sbjct: 127 ENCVDCMLCVEVCPVDAIERRVLARREDFPKADARGSIRIDTEKCNLCGICASFC 181 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 28/111 (25%), Gaps = 28/111 (25%) Query: 36 YPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93 P E S + +RCI C C A+CP +A+ Sbjct: 219 CPEEAIEVESSKVIEADVERVAEVVFTDRCIHCGYCVAVCPYEAVINIKPVEGEIKVYWK 278 Query: 94 VRYDID--------------------------MIKCIYCGLCQEACPVDAI 118 + C+YCG C+ CP I Sbjct: 279 RLARVCEPLSCKACVVVCKTRAWHIDSELKLEPEFCVYCGACENVCPHRLI 329 >gi|315619435|gb|EFU99979.1| pyruvate:ferredoxin oxidoreductase [Escherichia coli 3431] Length = 1174 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 27/142 (19%), Positives = 35/142 (24%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPIWKEELCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGT--------------RRTVRYD--IDMIKCIYCGLCQEACPV-- 115 P AI + P R +Y + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEAMENAPASLHSLDVKSRDMRGQKYVLLVAPEDCTGCNLCVEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI E E + Sbjct: 760 RQNPEIKAINMMSRLEHVEEEK 781 >gi|301063636|ref|ZP_07204150.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] gi|300442284|gb|EFK06535.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] Length = 1084 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 24/89 (26%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 P R+ ++ CI C LC +C + S + Sbjct: 102 RCPHVPVLKELAQAYGIEKPRFVPEKDDCILCGLCVRMCEKVGNSAISLTGRGVEMKVDT 161 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 ++ C CG C CP I Sbjct: 162 PFEEQTEFCAGCGACDSVCPTGHIKLEKI 190 Score = 40.5 bits (93), Expect = 0.085, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 6/64 (9%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 C C +C AICP A + P R +I+ C CGLC +C Sbjct: 1012 QTDPALCSGCGVCLAICPYSAPALREKPPFAG------RVEINPALCKGCGLCVASCRSG 1065 Query: 117 AIVE 120 A+ Sbjct: 1066 ALNL 1069 >gi|296271827|ref|YP_003654458.1| pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta [Arcobacter nitrofigilis DSM 7299] gi|296096002|gb|ADG91952.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Arcobacter nitrofigilis DSM 7299] Length = 137 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 32/92 (34%), Gaps = 13/92 (14%) Query: 47 FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 + G+ + + E CI C+ C CP A+ + ID C C Sbjct: 49 YVGDWRVMKPVWNTELCIDCQNCWIYCPDSAVISRNKEIQG----------IDYDHCKGC 98 Query: 107 GLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 G+C E CP + F + EL K Sbjct: 99 GICVEVCPTNPKSL---MMFNETEKNELALTK 127 >gi|294496337|ref|YP_003542830.1| electron transport complex, RnfABCDGE type subunit beta [Methanohalophilus mahii DSM 5219] gi|292667336|gb|ADE37185.1| electron transport complex, RnfABCDGE type, B subunit [Methanohalophilus mahii DSM 5219] Length = 265 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 26/62 (41%), Gaps = 11/62 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI CKLCE CP A+ + +ID KCI CG C E CP I Sbjct: 214 CENGCIGCKLCEKACPVDAVHVTK-----------FLAEIDQEKCISCGKCVEKCPQGCI 262 Query: 119 VE 120 Sbjct: 263 EM 264 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 5/69 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEAC 113 + C +C +C A CP + + + CI C LC++AC Sbjct: 169 NKNLCTSCGICIASCPNDILVFAKQSEKVHVVCMSHDKGKTVKAVCENGCIGCKLCEKAC 228 Query: 114 PVDAIVEGP 122 PVDA+ Sbjct: 229 PVDAVHVTK 237 >gi|288559598|ref|YP_003423084.1| tungsten formylmethanofuran dehydrogenase subunit F FwdF [Methanobrevibacter ruminantium M1] gi|288542308|gb|ADC46192.1| tungsten formylmethanofuran dehydrogenase subunit F FwdF [Methanobrevibacter ruminantium M1] Length = 367 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 30/94 (31%), Positives = 40/94 (42%), Gaps = 9/94 (9%) Query: 27 FFKAKTTINYPFEKGSTSPRFRGEHALRR--YPNGEERCIACKLCEAICPAQAITIESGP 84 F K P E + + L EE CI C C +CPA+AI ++ Sbjct: 139 LFCKKCEAACPRESITIDRKLPNRADLVTGEIEVDEEECIYCGACAELCPAEAIVVDKAT 198 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ID KC+YC +C++ACPVDAI Sbjct: 199 GEES-------IVIDKEKCVYCLVCKKACPVDAI 225 Score = 41.2 bits (95), Expect = 0.043, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 34/86 (39%), Gaps = 8/86 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + + F+G + EE+C C C +CP ++ P+ R Sbjct: 267 CPADAATVKQAFKGTLEI-----DEEKCGTCGACIDVCPCNVLSF---PKSTGPGDRGTH 318 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEG 121 + CI+CG C + CP +A+ Sbjct: 319 LVKEEDYCIHCGACAKVCPNEALTVT 344 Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 7/66 (10%) Query: 59 GEERCIACKLCEAICPAQA-------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 +E+C+ C +C+ CP A + T ID CI CG C+ Sbjct: 206 DKEKCVYCLVCKKACPVDAIKAVCRSCSYGEYDLDPAKAAITGNAIIDSETCIKCGWCEG 265 Query: 112 ACPVDA 117 CP DA Sbjct: 266 VCPADA 271 Score = 38.2 bits (87), Expect = 0.38, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 4/66 (6%) Query: 59 GEERCIACKLCEAICPAQA----ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 E++C+ C LC +CPA A I S +ID KC++C C+ ACP Sbjct: 90 CEDKCVLCGLCSGVCPAGALELAIDGVSIKENEAYPHLVTSAEIDEDKCLFCKKCEAACP 149 Query: 115 VDAIVE 120 ++I Sbjct: 150 RESITI 155 Score = 37.4 bits (85), Expect = 0.69, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 32/95 (33%), Gaps = 22/95 (23%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT----------------- 90 R R + C+ C LCEA CP +AI+++ Sbjct: 17 RSLGEERVLSFKDHVCVGCGLCEATCPVEAISLDEVAPIERKYVDTYFSGHEKIAQNYAL 76 Query: 91 -----RRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + DI KC+ CGLC CP A+ Sbjct: 77 FTNDNEIKAKLDICEDKCVLCGLCSGVCPAGALEL 111 >gi|254421458|ref|ZP_05035176.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Synechococcus sp. PCC 7335] gi|196188947|gb|EDX83911.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Synechococcus sp. PCC 7335] Length = 1216 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 33/114 (28%), Gaps = 26/114 (22%) Query: 58 NGEERCIACKLCEAICPA---QAITIESGP-------------RCHDGTRRTVRYDIDMI 101 + C+ C C +CP +A E R + + Sbjct: 708 WDPDVCVQCGKCVMVCPHSVIRAKVYEPEQLASAPDSFKSTSARDRAWSDLQFTIQVAAE 767 Query: 102 KCIYCGLCQEACPV--------DAIVEGPNFEFATETRQELYYDKERLLNNGDR 147 C C +C + CP AI P + R+ + E L N DR Sbjct: 768 DCTGCAICIDVCPAKNKLEPKRKAINMEPQLPLREQERKNWDFFLE--LPNPDR 819 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 13/58 (22%) Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIV 157 C+ CG C CP I Y+ E+L + D ++S R+ Sbjct: 710 PDVCVQCGKCVMVCPHSVIRAK-------------VYEPEQLASAPDSFKSTSARDRA 754 >gi|168178363|ref|ZP_02613027.1| anaerobic sulfite reductase, subunit C [Clostridium botulinum NCTC 2916] gi|182671088|gb|EDT83062.1| anaerobic sulfite reductase, subunit C [Clostridium botulinum NCTC 2916] Length = 321 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 25/88 (28%), Gaps = 8/88 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + G + + RC+ C+ C C +A + Sbjct: 145 CPNDCIKARMHDFGILGMTEPQYDKYRCVGCQACVNNCKKRA--------AGALRFENFK 196 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPN 123 D KCI CG C CP A Sbjct: 197 VIRDHEKCIGCGECVGKCPTGAWTRSKE 224 >gi|156975236|ref|YP_001446143.1| electron transport complex protein RnfB [Vibrio harveyi ATCC BAA-1116] gi|166225088|sp|A7MVC6|RNFB_VIBHB RecName: Full=Electron transport complex protein rnfB gi|156526830|gb|ABU71916.1| hypothetical protein VIBHAR_02965 [Vibrio harveyi ATCC BAA-1116] Length = 197 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 28/87 (32%), Gaps = 11/87 (12%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103 S E+ CI C C CP AI + + + +C Sbjct: 95 SAHDLDSKVKTVAFIHEDMCIGCTKCIQACPVDAIVGGTK----------ALHTVIKDEC 144 Query: 104 IYCGLCQEACPVDAIVEGPNFEFATET 130 C LC CP D I P E TE+ Sbjct: 145 TGCDLCVAPCPTDCIEMIPV-ETTTES 170 >gi|466365|gb|AAA87056.1| potential NAD-reducing hydrogenase subunit [Desulfovibrio fructosovorans] Length = 490 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 10/67 (14%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 AL Y +C C LC +CP + I+ + ID +CI CG C + Sbjct: 431 ALLTYTIDPAKCTGCGLCTRVCPVECISGTKKQP----------HTIDTTRCIKCGACYD 480 Query: 112 ACPVDAI 118 C D+I Sbjct: 481 KCKFDSI 487 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 17/44 (38%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 ++ + Y ID KC CGLC CPV+ I Sbjct: 418 HVDDKKCPAHVCTALLTYTIDPAKCTGCGLCTRVCPVECISGTK 461 >gi|20094437|ref|NP_614284.1| ferredoxin [Methanopyrus kandleri AV19] gi|19887524|gb|AAM02214.1| Ferredoxin [Methanopyrus kandleri AV19] Length = 299 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 3/75 (4%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103 + + E+C C LC +CP AIT R R V+ +ID KC Sbjct: 188 PDTMELKQGRKVAKIDPEKCTGCTLCAQVCPWGAIT---AARDVPVQSREVKNEIDEDKC 244 Query: 104 IYCGLCQEACPVDAI 118 + CG+C E CP D I Sbjct: 245 VGCGVCAEVCPGDLI 259 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 3/70 (4%) Query: 56 YPNGEERCIACKLCEAICPAQAITIE---SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 YP C+ C C CP AI ++ + +C+ C C + Sbjct: 99 YPELRGFCVMCLKCMETCPIDAIGMKGVVEPKSEPPEHPEDEDVYVHPERCVGCTYCLQV 158 Query: 113 CPVDAIVEGP 122 CP DAI P Sbjct: 159 CPTDAIEMVP 168 Score = 37.8 bits (86), Expect = 0.59, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 27/69 (39%), Gaps = 15/69 (21%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + C+ C+ C A CP AI E G M CI CG C +AC Sbjct: 1 MPIEIDMDSCLLCEACVAACPTGAIRREDGD---------------MNHCIVCGACVKAC 45 Query: 114 PVDAIVEGP 122 PVDA+ Sbjct: 46 PVDALELED 54 >gi|28898878|ref|NP_798483.1| electron transport complex protein RnfC [Vibrio parahaemolyticus RIMD 2210633] gi|260897154|ref|ZP_05905650.1| electron transport complex protein RnfC [Vibrio parahaemolyticus Peru-466] gi|260902709|ref|ZP_05911104.1| electron transport complex, rnfABCDGE type, c subunit family protein [Vibrio parahaemolyticus AQ4037] gi|28807097|dbj|BAC60367.1| RnfC-related protein [Vibrio parahaemolyticus RIMD 2210633] gi|308087160|gb|EFO36855.1| electron transport complex protein RnfC [Vibrio parahaemolyticus Peru-466] gi|308109009|gb|EFO46549.1| electron transport complex, rnfABCDGE type, c subunit family protein [Vibrio parahaemolyticus AQ4037] Length = 869 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 1/53 (1%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 CI C C CPA + + ++++ CI CG C CP Sbjct: 377 ECIRCGQCAEACPAS-LLPQQLQWHAKAEEYDKLEELNLKDCIECGACAFVCP 428 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 19/43 (44%) Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + +Q ++ TR + ++CI CG C EACP Sbjct: 347 LPHSQVPITKTANCILAPTRHEISAHQYEMECIRCGQCAEACP 389 >gi|116749237|ref|YP_845924.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116698301|gb|ABK17489.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Syntrophobacter fumaroxidans MPOB] Length = 1009 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 6/59 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 C AC CE C +A + DG +R + + C CG C ACP A Sbjct: 939 DAALCRACGECENTCLFEA---IKVKQMEDGRKRAMV---NEALCTGCGACNAACPTGA 991 Score = 38.5 bits (88), Expect = 0.31, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 12/87 (13%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR-------CHDGTRRTVRY 96 F+ + E+C+ C +C + CP + +G + Y Sbjct: 91 PGNFKATVRRKARAVDPEKCVGCGICASKCPTKVPDPFNGEMSERRAIYVPFPQAVPLVY 150 Query: 97 DIDMIKCIY-----CGLCQEACPVDAI 118 ID C Y C +C++ C AI Sbjct: 151 TIDKSVCRYFTKGKCRICEKVCKNKAI 177 >gi|325278986|ref|YP_004251528.1| FAD dependent oxidoreductase [Odoribacter splanchnicus DSM 20712] gi|324310795|gb|ADY31348.1| FAD dependent oxidoreductase [Odoribacter splanchnicus DSM 20712] Length = 1076 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 25/81 (30%), Gaps = 10/81 (12%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E+ R + AC C CP AIT S + I Sbjct: 441 EEPRLPEESRRLARGFVQADCLYGF-ACNPCSFACPHGAITKTST---------STVPVI 490 Query: 99 DMIKCIYCGLCQEACPVDAIV 119 D KCI C C CP AI Sbjct: 491 DYDKCIGCMECVYQCPGLAIF 511 >gi|295110357|emb|CBL24310.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [Ruminococcus obeum A2-162] Length = 1178 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 21/71 (29%), Gaps = 14/71 (19%) Query: 58 NGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTR---------RTVRYDIDMIKC 103 E CI C C +CP AI T E +G + C Sbjct: 689 WQPENCIQCNRCAYVCPHAAIRPVALTEEEAANAPEGMATLPMTGMKDYKFTMTVSAYDC 748 Query: 104 IYCGLCQEACP 114 CG C CP Sbjct: 749 TGCGSCANVCP 759 Score = 34.7 bits (78), Expect = 4.9, Method: Composition-based stats. Identities = 8/20 (40%), Positives = 8/20 (40%) Query: 99 DMIKCIYCGLCQEACPVDAI 118 CI C C CP AI Sbjct: 690 QPENCIQCNRCAYVCPHAAI 709 >gi|288818982|ref|YP_003433330.1| NAD-dependent formate dehydrogenase alpha subunit [Hydrogenobacter thermophilus TK-6] gi|288788382|dbj|BAI70129.1| NAD-dependent formate dehydrogenase alpha subunit [Hydrogenobacter thermophilus TK-6] gi|308752567|gb|ADO46050.1| formate dehydrogenase alpha subunit ;NAD-dependent formate dehydrogenase catalytic subunit [Hydrogenobacter thermophilus TK-6] Length = 942 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 34/111 (30%), Gaps = 14/111 (12%) Query: 25 RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---E 81 RY F K + P + + F +CI C C C TI Sbjct: 142 RYGFDGKNHLKLPKDDSNPYFTF-----------DPSKCIVCYRCVRACDEIQNTIALTV 190 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 G + +C+ CG C ACP A++E E R Sbjct: 191 EGRGFASLVKPGPTGRFITSECVSCGACVFACPTSALMEKSVIEHGMPDRS 241 >gi|253997321|ref|YP_003049385.1| RnfABCDGE type electron transport complex subunit B [Methylotenera mobilis JLW8] gi|253984000|gb|ACT48858.1| electron transport complex, RnfABCDGE type, B subunit [Methylotenera mobilis JLW8] Length = 200 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 27/87 (31%), Gaps = 10/87 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E + E CI C LC CP AI + + I Sbjct: 90 EYKPLNAEHGLPKPKAVAFIDEATCIGCTLCIQACPVDAILGAAK----------HMHTI 139 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFE 125 +C C LC CPVD I P E Sbjct: 140 IASECTGCELCLAPCPVDCISMQPLAE 166 >gi|258515481|ref|YP_003191703.1| aldo/keto reductase [Desulfotomaculum acetoxidans DSM 771] gi|257779186|gb|ACV63080.1| aldo/keto reductase [Desulfotomaculum acetoxidans DSM 771] Length = 317 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 11/56 (19%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C C C A A++I R ++ KC CG C CP I Sbjct: 270 CKNCGECVQRCQAGALSIGID-----------RVQVNQDKCRLCGYCASVCPEFCI 314 >gi|261367572|ref|ZP_05980455.1| periplasmic [Fe] hydrogenase, large subunit [Subdoligranulum variabile DSM 15176] gi|282570359|gb|EFB75894.1| periplasmic [Fe] hydrogenase, large subunit [Subdoligranulum variabile DSM 15176] Length = 585 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 26/94 (27%), Gaps = 7/94 (7%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---YDIDMIKCIYC 106 +CI C C +C R I C+ C Sbjct: 135 WPRDFPLYRDTNKCIKCMRCIQVCDKIQGVHVWDLSGTGSRTRVDVSGNRRIKESDCVLC 194 Query: 107 GLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140 G C CP A+ E + + A + D E+ Sbjct: 195 GQCITHCPTGALRERNDTQRAF----DAIADPEK 224 >gi|297619110|ref|YP_003707215.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanococcus voltae A3] gi|297378087|gb|ADI36242.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus voltae A3] Length = 145 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 26/67 (38%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E++C C C CP AIT+ + +R + C CG C CP + Sbjct: 14 KWDEKKCEYCGPCAIKCPNDAITVVNPKGLELPSRNKTDKANEFKMCDLCGTCVSVCPTE 73 Query: 117 AIVEGPN 123 A+ G Sbjct: 74 ALKMGKI 80 Score = 40.5 bits (93), Expect = 0.084, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 3/67 (4%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 N + C C C ++CP +A+ + + + R + C CG C E CP + Sbjct: 55 NEFKMCDLCGTCVSVCPTEALKM---GKIIHNEKEYDRIEFTPSLCNSCGTCVEVCPQNT 111 Query: 118 IVEGPNF 124 + + Sbjct: 112 LKVDEEY 118 >gi|156933858|ref|YP_001437774.1| hypothetical protein ESA_01684 [Cronobacter sakazakii ATCC BAA-894] gi|156532112|gb|ABU76938.1| hypothetical protein ESA_01684 [Cronobacter sakazakii ATCC BAA-894] Length = 1173 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 24/143 (16%), Positives = 35/143 (24%), Gaps = 25/143 (17%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A E C C C A C Sbjct: 646 MLAGLGDAL------PVSALPPDGTWPLGTTQWEKRNIAEEIPIWKEALCTQCNHCVAAC 699 Query: 74 PAQAITIES----------------GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 P AI + + D + + C C LC E CP Sbjct: 700 PHSAIRAKVVAPDALADAPASLAALDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPAKD 759 Query: 118 IVEGPNFEFATETRQELYYDKER 140 +R E +KE+ Sbjct: 760 RQNPEIKAINMMSRLEHV-EKEK 781 >gi|154496280|ref|ZP_02034976.1| hypothetical protein BACCAP_00567 [Bacteroides capillosus ATCC 29799] gi|150274363|gb|EDN01440.1| hypothetical protein BACCAP_00567 [Bacteroides capillosus ATCC 29799] Length = 1180 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 28/93 (30%), Gaps = 18/93 (19%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA-----------------QAITIESGPRCHDGT 90 RG + +CI C C +CP +A I Sbjct: 681 RGVAVMVPTW-DASKCIQCNQCSYVCPHATIRPYALTEEEAAAAPEAAKIVDVKAGKGKG 739 Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + + C+ C +C + CPV A+ P Sbjct: 740 VYKFAIAVSPLDCMGCAVCAKNCPVQALTMVPQ 772 >gi|197116525|ref|YP_002136952.1| molybdopterin-binding oxidoreductase [Geobacter bemidjiensis Bem] gi|197085885|gb|ACH37156.1| molybdopterin-binding oxidoreductase [Geobacter bemidjiensis Bem] Length = 966 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 27/97 (27%), Gaps = 18/97 (18%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P E + + +RCI C C C A+ G G R Sbjct: 724 PEEDMYPAHEHKKHR--WGMAIDLQRCIGCGACAVACYAENNIPVIGKELVRGGREMAWL 781 Query: 97 DIDMIK--------------CIYCGL--CQEACPVDA 117 + + C +C C+ CPV A Sbjct: 782 RVPPYRMPGDRLRYAWLPLHCQHCDAAPCEPVCPVFA 818 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 1/37 (2%) Query: 78 ITIESGPRCHDGTRRTVR-YDIDMIKCIYCGLCQEAC 113 E ++ ID+ +CI CG C AC Sbjct: 722 HRPEEDMYPAHEHKKHRWGMAIDLQRCIGCGACAVAC 758 >gi|83590738|ref|YP_430747.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica ATCC 39073] gi|83573652|gb|ABC20204.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Moorella thermoacetica ATCC 39073] Length = 228 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 8/68 (11%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 R+ +RC+AC C +CPA AI P Y I C++C C E C Sbjct: 154 WRFHINPDRCLACGRCRRVCPAGAIATNEAP--------GKSYRILPRYCLFCFACLEVC 205 Query: 114 PVDAIVEG 121 P +I Sbjct: 206 PRSSIELT 213 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 19/57 (33%), Gaps = 6/57 (10%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +CP + R+ I+ +C+ CG C+ CP AI Sbjct: 128 FFTGAAWHRYLCPFGVLFSLPAGVSRW------RFHINPDRCLACGRCRRVCPAGAI 178 >gi|73538477|ref|YP_298844.1| formate dehydrogenase, alpha subunit [Ralstonia eutropha JMP134] gi|72121814|gb|AAZ64000.1| Formate dehydrogenase, alpha subunit [Ralstonia eutropha JMP134] Length = 937 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 5/76 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID----MIKCIYCGLCQEACP 114 + CI C C C + + G + +D+D C+ CG C +ACP Sbjct: 154 NLDACIQCTRCVRACRDE-QVNDVIGLALRGDAARIVFDMDDPLGASTCVACGECVQACP 212 Query: 115 VDAIVEGPNFEFATET 130 A++ + A Sbjct: 213 TGALMPARDAALAVPD 228 >gi|21227069|ref|NP_632991.1| glutamate synthase, large chain [Methanosarcina mazei Go1] gi|20905394|gb|AAM30663.1| glutamate synthase, large chain [Methanosarcina mazei Go1] Length = 503 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 25/81 (30%), Gaps = 14/81 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++C+ C C C E I+ KC C C CP DAI Sbjct: 15 DRDQCMDCGRCIENCSYGVYRREGDKIL-----------IESRKCTACLRCVSMCPRDAI 63 Query: 119 VEGPNFEFATETRQELYYDKE 139 E + R + +E Sbjct: 64 SIT---EKPVDYRSHPVWTRE 81 >gi|288561260|ref|YP_003424746.1| energy-converting hydrogenase B subunit K EhbK [Methanobrevibacter ruminantium M1] gi|288543970|gb|ADC47854.1| energy-converting hydrogenase B subunit K EhbK [Methanobrevibacter ruminantium M1] Length = 486 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 3/94 (3%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG---T 90 I+ P + + + + + E C+ C LC+ IC +AI Sbjct: 389 IHCPTDAIPKTTSTKYKISGGFNYIDENLCVKCGLCKDICGEEAIYTVDISNEDVNLGTK 448 Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 + +R+ +D KCIYCG C CP + + F Sbjct: 449 NKNLRFVVDDDKCIYCGACMNICPSKSFIFEREF 482 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 34/77 (44%), Gaps = 11/77 (14%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 + R + + CI+C +C +CP +AI++ + ++D+ KCI Sbjct: 334 EQARSFQTISWDGEVSDDCISCGICAELCPKEAISL-----------KRGTINVDLDKCI 382 Query: 105 YCGLCQEACPVDAIVEG 121 C C CP DAI + Sbjct: 383 MCETCGIHCPTDAIPKT 399 Score = 38.5 bits (88), Expect = 0.32, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 10/67 (14%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 C++C C +C QA + ++ + CI CG+C E C Sbjct: 313 NEDNKLFGYCVSCGKCTQVCNEQARSFQTISWDGE----------VSDDCISCGICAELC 362 Query: 114 PVDAIVE 120 P +AI Sbjct: 363 PKEAISL 369 Score = 38.2 bits (87), Expect = 0.35, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 10/72 (13%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 A+R N C+ C C CP AI + Y +D KC CG+CQ Sbjct: 21 EAIRFVDNKAFSCMCCGACFEACPNHAIFKN----------KYGGYVVDRAKCNGCGVCQ 70 Query: 111 EACPVDAIVEGP 122 CP+++I Sbjct: 71 FTCPIESIHIDN 82 Score = 37.4 bits (85), Expect = 0.60, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 3/65 (4%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++CI C+ C CP AI + + ID C+ CGLC++ C +AI Sbjct: 377 DLDKCIMCETCGIHCPTDAIPKTTSTKYKISGGFN---YIDENLCVKCGLCKDICGEEAI 433 Query: 119 VEGPN 123 Sbjct: 434 YTVDI 438 Score = 34.3 bits (77), Expect = 5.7, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 27/83 (32%), Gaps = 15/83 (18%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E + E+C+ C C CP +AI Sbjct: 139 ENMKLPVKSDKSADRVCVSTDMEKCVKCGRCAYYCPTRAI---------------EVIIQ 183 Query: 99 DMIKCIYCGLCQEACPVDAIVEG 121 D C+ C +C++ CP A+ +G Sbjct: 184 DEGFCVGCKICEDLCPTGALKDG 206 >gi|261339612|ref|ZP_05967470.1| electron transport complex protein RnfC [Enterobacter cancerogenus ATCC 35316] gi|288318434|gb|EFC57372.1| electron transport complex protein RnfC [Enterobacter cancerogenus ATCC 35316] Length = 678 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 37/111 (33%), Gaps = 15/111 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ CI C C CPA + + G ++ CI CG C CP Sbjct: 373 EEKGCIRCSACADACPAD-LLPQQLYWYSKGQLHDKAKAHNLADCIECGACAWVCP---- 427 Query: 119 VEGPNFEFATETRQE------LYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 N RQE + + +R R+E+ R + + R Sbjct: 428 ---SNIPLVQYFRQEKAEIYAISMEDKRAAEAKARFEARQAR-LEREKAAR 474 >gi|197120393|ref|YP_002140820.1| pyruvate:ferredoxin oxidoreductase [Geobacter bemidjiensis Bem] gi|197089753|gb|ACH41024.1| pyruvate:ferredoxin oxidoreductase [Geobacter bemidjiensis Bem] Length = 1238 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 23/113 (20%), Positives = 34/113 (30%), Gaps = 20/113 (17%) Query: 31 KTTINYPFEKGSTSPR--FRGEHALRRYPNGEERCIACKLCEAICPA------------- 75 + P S + A+ +E CI C C ICP Sbjct: 659 PVSAFSPDGVFPFSTARFEKRGVAINVPEWIKENCIQCNQCSYICPHATIRPFLATDQEL 718 Query: 76 -QAITIESGPRCHDGTRRTVRYDI--DMIKCIYCGLCQEACP--VDAIVEGPN 123 A + + + I + C+ CG C + CP V A+V P Sbjct: 719 SGAPESFETIPANAKEIKGHGFRIQVYTLDCMGCGNCADICPAKVSALVMKPI 771 >gi|77459665|ref|YP_349172.1| dihydropyrimidine dehydrogenase [Pseudomonas fluorescens Pf0-1] gi|77383668|gb|ABA75181.1| dihydropyrimidine dehydrogenase (NADP+) / dihydroorotate oxidase B, catalytic subunit [Pseudomonas fluorescens Pf0-1] Length = 424 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 4/65 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117 +E CI C C C + S + DGT + Y++ +C+ C LCQ CPV D Sbjct: 341 DQEACIGCGRCHIACEDTSHQAISSLKQADGTHK---YEVIDDECVGCNLCQITCPVADC 397 Query: 118 IVEGP 122 I P Sbjct: 398 IEMVP 402 >gi|73748521|ref|YP_307760.1| pyruvic-ferredoxin oxidoreductase, delta subunit [Dehalococcoides sp. CBDB1] gi|73660237|emb|CAI82844.1| pyruvic-ferredoxin oxidoreductase, delta subunit [Dehalococcoides sp. CBDB1] Length = 86 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 10/87 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E G+ S G+ + + ++CI C +C CP I ++ Sbjct: 9 EPGNASQYKTGDWRSQLPIHNFKKCIKCGVCYIFCPEGCINETKEG----------FFEA 58 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFE 125 D+ C CG+C CP AIV E Sbjct: 59 DLFYCKGCGICAHECPTGAIVMKDEEE 85 >gi|114567216|ref|YP_754370.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338151|gb|ABI68999.1| NADH dehydrogenase (quinone) [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 604 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 10/67 (14%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 L + C C LC CP + I E + I+ KCI CG C + Sbjct: 545 ELSEFWIDPVICTGCGLCLPRCPVEGIKGEKKQA----------HWIESDKCIRCGECID 594 Query: 112 ACPVDAI 118 +C AI Sbjct: 595 SCSFQAI 601 Score = 37.8 bits (86), Expect = 0.58, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 17/40 (42%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 IE R + ID + C CGLC CPV+ I Sbjct: 532 HIEGQRCPAGICRELSEFWIDPVICTGCGLCLPRCPVEGI 571 >gi|310779014|ref|YP_003967347.1| putative PAS/PAC sensor protein [Ilyobacter polytropus DSM 2926] gi|309748337|gb|ADO82999.1| putative PAS/PAC sensor protein [Ilyobacter polytropus DSM 2926] Length = 570 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 27/74 (36%), Gaps = 11/74 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 ++ E C C C C +AI IE+ I KCI CG C Sbjct: 1 MQVMNFSEANCKHCYKCVRKCEVKAIKIENDQAH-----------IMEDKCIACGQCFAI 49 Query: 113 CPVDAIVEGPNFEF 126 CP +A + +F Sbjct: 50 CPQNARNIMSDLDF 63 >gi|309389388|gb|ADO77268.1| putative iron-sulfur protein [Halanaerobium praevalens DSM 2228] Length = 416 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 11/63 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AIT + ID C+ CG+C +CP A+ Sbjct: 288 NYESCINCDKCLDACPIDAITKNNNQ-----------IKIDQDICLGCGVCVRSCPTKAL 336 Query: 119 VEG 121 Sbjct: 337 SLQ 339 Score = 33.5 bits (75), Expect = 9.5, Method: Composition-based stats. Identities = 11/27 (40%), Positives = 16/27 (59%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPN 123 ++ CI C C +ACP+DAI + N Sbjct: 286 QLNYESCINCDKCLDACPIDAITKNNN 312 >gi|307262756|ref|ZP_07544383.1| Electron transport complex protein rnfB [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|306871901|gb|EFN03618.1| Electron transport complex protein rnfB [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 196 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 21/65 (32%), Gaps = 10/65 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ CI C C CP AI + + + C C LC CP + I Sbjct: 105 HEDMCIGCTKCIQACPVDAIIGTNK----------AMHTVIPDLCTGCELCVAPCPTNCI 154 Query: 119 VEGPN 123 Sbjct: 155 EMVKQ 159 Score = 38.2 bits (87), Expect = 0.42, Method: Composition-based stats. Identities = 12/25 (48%), Positives = 14/25 (56%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 I CI C C +ACPVDAI+ Sbjct: 104 IHEDMCIGCTKCIQACPVDAIIGTN 128 >gi|294677721|ref|YP_003578336.1| [pyruvate formate-lyase]-activating enzyme [Rhodobacter capsulatus SB 1003] gi|294476541|gb|ADE85929.1| [pyruvate formate-lyase]-activating enzyme-1 [Rhodobacter capsulatus SB 1003] Length = 305 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 16/78 (20%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI---- 118 CI C C +CP A++ ++ KCI CG C + CP +A+ Sbjct: 61 CIGCGKCIPVCPVGALSRDNPGFVDR------------AKCIRCGDCTKVCPTEALKRAG 108 Query: 119 VEGPNFEFATETRQELYY 136 E E R++ + Sbjct: 109 RRMSVAEVMQELRKDAIH 126 >gi|294889635|ref|XP_002772896.1| pyruvate:ferredoxin oxidoreductase/NADPH-cytochrome P450, putative [Perkinsus marinus ATCC 50983] gi|239877476|gb|EER04712.1| pyruvate:ferredoxin oxidoreductase/NADPH-cytochrome P450, putative [Perkinsus marinus ATCC 50983] Length = 1818 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 30/104 (28%), Gaps = 27/104 (25%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQ-----------------AITIESGPRCHDGTRRT 93 AL ++C C C CP A + + Sbjct: 727 VALEVPEVDMDKCTQCNTCSMACPHAVIRPFLLSQYEVDNKPAAFDTRAAKGGAEVAGLH 786 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVE----------GPNFEFA 127 R + C C +C ACP DA+ G N+E+A Sbjct: 787 YRIQVSPYDCTGCEVCVNACPDDALSMKHLADVIETSGKNWEYA 830 >gi|163839921|ref|YP_001624327.1| N-succinyldiaminopimelate aminotransferase [Renibacterium salmoninarum ATCC 33209] gi|162953397|gb|ABY22912.1| ferredoxin [Renibacterium salmoninarum ATCC 33209] Length = 539 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 25/101 (24%), Positives = 35/101 (34%), Gaps = 17/101 (16%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 I K C CP I I +C+ CG C+ CPV+AI + Sbjct: 52 IKDKACIEECPVDCIYEGE-----------RSLYIHPDECVDCGACEPVCPVEAIYYEDD 100 Query: 124 F--EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPY 162 E+A + + E G + V + TD PY Sbjct: 101 VPEEWADYYKA----NVEFFNEIGSPGGAAKVGSTGTDHPY 137 Score = 33.9 bits (76), Expect = 8.3, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 3/63 (4%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E+ + GE +L +P+ C+ C CE +CP +AI E + Sbjct: 59 EECPVDCIYEGERSLYIHPDE---CVDCGACEPVCPVEAIYYEDDVPEEWADYYKANVEF 115 Query: 99 DMI 101 Sbjct: 116 FNE 118 >gi|126207654|ref|YP_001052879.1| electron transport complex protein RnfB [Actinobacillus pleuropneumoniae L20] gi|307256192|ref|ZP_07537979.1| Electron transport complex protein rnfB [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|126096446|gb|ABN73274.1| electron transport complex protein RnfB [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|306865373|gb|EFM97269.1| Electron transport complex protein rnfB [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 196 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 21/65 (32%), Gaps = 10/65 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ CI C C CP AI + + + C C LC CP + I Sbjct: 105 HEDMCIGCTKCIQACPVDAIIGTNK----------AMHTVIPDLCTGCELCVAPCPTNCI 154 Query: 119 VEGPN 123 Sbjct: 155 EMVKQ 159 Score = 38.2 bits (87), Expect = 0.42, Method: Composition-based stats. Identities = 12/25 (48%), Positives = 14/25 (56%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 I CI C C +ACPVDAI+ Sbjct: 104 IHEDMCIGCTKCIQACPVDAIIGTN 128 >gi|91772586|ref|YP_565278.1| formylmethanofuran dehydrogenase, subunit F [Methanococcoides burtonii DSM 6242] gi|91711601|gb|ABE51528.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Methanococcoides burtonii DSM 6242] Length = 436 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 33/74 (44%), Gaps = 1/74 (1%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 +RC+ C +C ICP +A+ + G +++ KC +C +C CPV+ Sbjct: 35 DYDYKRCVGCGICVRICPTRALELGPMKEIATGLDAPPVM-MELDKCTFCSMCVNFCPVN 93 Query: 117 AIVEGPNFEFATET 130 A+ +F E Sbjct: 94 ALEMRSEGDFPKED 107 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 4/87 (4%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 EK T+ L + C C LC+ ICP AI G + + + + + Sbjct: 184 EKEPTATDPMPFEQLIIDED---SCDYCTLCQDICPEDAIK-VKGEKPCEAPEVSGKVTV 239 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFE 125 D KC CG C CP DA+ FE Sbjct: 240 DDAKCTRCGWCDAVCPYDAVDMLKPFE 266 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 6/75 (8%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRT--VRYDIDMIKCIYCGLCQEACPVDAI 118 ++C C +C CP A+ + S + ++ KC+ C LC+ CP DAI Sbjct: 78 DKCTFCSMCVNFCPVNALEMRSEGDFPKEDQYPRLEQFVRMNEKCVPCSLCEATCPEDAI 137 Query: 119 VEGPNFEFATETRQE 133 E+ +++ Sbjct: 138 ----ELEYTFPKKED 148 Score = 42.4 bits (98), Expect = 0.023, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 2/60 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++C C +C C A + + ID C YC LCQ+ CP DAI Sbjct: 163 DNDKCNLCGICARFC--DAFLMLEKEPTATDPMPFEQLIIDEDSCDYCTLCQDICPEDAI 220 Score = 37.8 bits (86), Expect = 0.53, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 27/79 (34%), Gaps = 9/79 (11%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P++ F GE L + C C ICP+ DG Sbjct: 254 CPYDAVDMLKPFEGELMLVESHIQKCDAQGCHACFNICPSHLWY-----VPDDGKNIAAV 308 Query: 96 YDIDMIKCIYCGLCQEACP 114 YD+ C YCG C ACP Sbjct: 309 YDL----CTYCGACVNACP 323 Score = 35.1 bits (79), Expect = 3.3, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCI 104 L ++ E+C+ C LCEA CP AI +E +ID KC Sbjct: 109 YPRLEQFVRMNEKCVPCSLCEATCPEDAIELEYTFPKKEDIAPLKENAEGEIEIDNDKCN 168 Query: 105 YCGLCQEAC 113 CG+C C Sbjct: 169 LCGICARFC 177 >gi|77360046|ref|YP_339621.1| electron transport complex protein RnfC [Pseudoalteromonas haloplanktis TAC125] gi|76874957|emb|CAI86178.1| Electron transport complex protein rnfC [Pseudoalteromonas haloplanktis TAC125] Length = 846 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 2/92 (2%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C C CPA + + + ++ CI CG C CP I Sbjct: 377 CIRCSACADACPAS-LLPQQLQWFAKSKEYDKLQEHNLFDCIECGACAYVCP-SEIPLVQ 434 Query: 123 NFEFATETRQELYYDKERLLNNGDRWESEIVR 154 + A +E +K + +R+++ R Sbjct: 435 YYRVAKVEIKEQQAEKIKADRAKERFDARKER 466 >gi|328952778|ref|YP_004370112.1| formate dehydrogenase, alpha subunit [Desulfobacca acetoxidans DSM 11109] gi|328453102|gb|AEB08931.1| formate dehydrogenase, alpha subunit [Desulfobacca acetoxidans DSM 11109] Length = 898 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 26/91 (28%), Gaps = 3/91 (3%) Query: 31 KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC---PAQAITIESGPRCH 87 + I P + E +CI C C C H Sbjct: 118 RYNIPAPSFAFPPETPYHLEDNKNLIRRDLSKCIMCGRCVRACKERQVNNAISIGYRGSH 177 Query: 88 DGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C++CG C +ACPV A+ Sbjct: 178 NKIVTMADSSYGDSDCVFCGECVQACPVGAL 208 >gi|311031550|ref|ZP_07709640.1| dihydropyrimidine dehydrogenase [Bacillus sp. m3-13] Length = 428 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 4/63 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117 ++ CI C C C + + G + C+ C LC CPV DA Sbjct: 338 NQDTCINCNKCHIACEDTSHQCIDMLKNSSGKSYL---QVREEDCVGCNLCSIVCPVEDA 394 Query: 118 IVE 120 I Sbjct: 395 ITM 397 >gi|308275218|emb|CBX31815.1| hypothetical protein N47_N26400 [uncultured Desulfobacterium sp.] Length = 830 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 29/80 (36%), Gaps = 3/80 (3%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM--- 100 SP+++ E++ +CI C+ C C I R Sbjct: 607 SPKYKIENSHPFITVDPNKCIVCRRCAVGCDNYQIQYAIKVDEVSDENRIGPPQYAPNIN 666 Query: 101 IKCIYCGLCQEACPVDAIVE 120 KC+ CGLC CP A+ E Sbjct: 667 DKCVDCGLCVGNCPTGALQE 686 >gi|303228470|ref|ZP_07315301.1| pyruvate synthase [Veillonella atypica ACS-134-V-Col7a] gi|302516828|gb|EFL58739.1| pyruvate synthase [Veillonella atypica ACS-134-V-Col7a] Length = 1179 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 29/90 (32%), Gaps = 17/90 (18%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQ------------AITIESGPRCHDGTRRTVRYDI 98 AL E CI C C +CP A E + +++ I Sbjct: 682 PALFVPKWMPENCIQCNQCSFVCPHATIRPILATEAEVAAAPEHFDTIPALGAKDLQFRI 741 Query: 99 --DMIKCIYCGLCQEACPVD---AIVEGPN 123 + C+ CG C + CP AIV Sbjct: 742 AVSPLDCLGCGNCVDICPAPKGKAIVMTSI 771 >gi|303231857|ref|ZP_07318568.1| pyruvate synthase [Veillonella atypica ACS-049-V-Sch6] gi|302513464|gb|EFL55495.1| pyruvate synthase [Veillonella atypica ACS-049-V-Sch6] Length = 1179 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 29/90 (32%), Gaps = 17/90 (18%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQ------------AITIESGPRCHDGTRRTVRYDI 98 AL E CI C C +CP A E + +++ I Sbjct: 682 PALFVPKWMPENCIQCNQCSFVCPHATIRPILATEAEVAAAPEHFDTIPALGAKDLQFRI 741 Query: 99 --DMIKCIYCGLCQEACPVD---AIVEGPN 123 + C+ CG C + CP AIV Sbjct: 742 AVSPLDCLGCGNCVDICPAPKGKAIVMTSI 771 >gi|257459837|ref|ZP_05624943.1| ferredoxin-type protein, NapH/MauN family [Campylobacter gracilis RM3268] gi|257442689|gb|EEV17826.1| ferredoxin-type protein, NapH/MauN family [Campylobacter gracilis RM3268] Length = 300 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 29/70 (41%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L + + RC C +C+ +C + + + + ++ + I C CG C + Sbjct: 225 LSKITWDKSRCDHCGVCQDVCFVSHVLDITKKKASENLGDKSKFMLKGIDCTLCGRCIDV 284 Query: 113 CPVDAIVEGP 122 C DA+ G Sbjct: 285 CHQDALSIGN 294 >gi|253989598|ref|YP_003040954.1| electron transport complex protein RnfC [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781048|emb|CAQ84210.1| electron transport complex protein rnfc [Photorhabdus asymbiotica] Length = 706 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 1/52 (1%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 CI C LC CPA + + G + ++ CI CG C CP Sbjct: 377 CIRCGLCVEACPAS-LLPQQLYWFSRGQEHEKARNHNLFDCIECGACAYVCP 427 Score = 37.4 bits (85), Expect = 0.75, Method: Composition-based stats. Identities = 10/15 (66%), Positives = 10/15 (66%) Query: 100 MIKCIYCGLCQEACP 114 CI CGLC EACP Sbjct: 374 EEACIRCGLCVEACP 388 >gi|296110007|ref|YP_003616956.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus infernus ME] gi|295434821|gb|ADG13992.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus infernus ME] Length = 136 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 26/81 (32%), Gaps = 16/81 (19%) Query: 59 GEERCIACKLCEAICPAQ-----------AITIESGPR-----CHDGTRRTVRYDIDMIK 102 CI+C CE ICP E P R + I K Sbjct: 3 NPSLCISCGKCERICPKNGIFIIDNVPIRCYHCEGNPCLLACPKEAIKRINGKVVIIEEK 62 Query: 103 CIYCGLCQEACPVDAIVEGPN 123 CI CGLC ACP AI Sbjct: 63 CIGCGLCALACPFGAIKMSRI 83 >gi|189423730|ref|YP_001950907.1| molybdopterin oxidoreductase [Geobacter lovleyi SZ] gi|189419989|gb|ACD94387.1| molybdopterin oxidoreductase [Geobacter lovleyi SZ] Length = 808 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 1/72 (1%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + RCI C+ C +C + + C +CG C ACP Sbjct: 151 ESDPNRCILCEKCVKVCREITGVGAIETQSCGDRAVVETVSGKPLDCDFCGNCIAACPTG 210 Query: 117 AIVEGPNFEFAT 128 ++ P F+FA Sbjct: 211 TLISKP-FKFAG 221 >gi|114048689|ref|YP_739239.1| formate dehydrogenase subunit alpha [Shewanella sp. MR-7] gi|113890131|gb|ABI44182.1| formate dehydrogenase, alpha subunit [Shewanella sp. MR-7] Length = 1432 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 24/75 (32%), Gaps = 15/75 (20%) Query: 59 GEERCIACKLCEAICP--------------AQAITIESGPRCHD-GTRRTVRYDIDMIKC 103 RCI+C C +C QA+ E R + C Sbjct: 651 DANRCISCGKCVDVCQLQSGHCAIQFSQDSYQALPQEMTQHMERRAPRVGFSASMADSHC 710 Query: 104 IYCGLCQEACPVDAI 118 + CG C + CP A+ Sbjct: 711 VQCGNCVQVCPTGAL 725 >gi|127511743|ref|YP_001092940.1| formate dehydrogenase, alpha subunit [Shewanella loihica PV-4] gi|126637038|gb|ABO22681.1| formate dehydrogenase, alpha subunit [Shewanella loihica PV-4] Length = 1410 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 15/75 (20%) Query: 59 GEERCIACKLCEAICP----AQAITIESG-----------PRCHDGTRRTVRYDIDMIKC 103 RCI+C C A+C QAI+ E R + +C Sbjct: 630 DPNRCISCGACVAMCRQQSGHQAISFEPDSYLALPQEMAATHSRQAPRAGFSATMADSQC 689 Query: 104 IYCGLCQEACPVDAI 118 + CG C + CP A+ Sbjct: 690 VQCGNCVQVCPTGAL 704 >gi|317484913|ref|ZP_07943802.1| glycyl-radical enzyme activating family protein [Bilophila wadsworthia 3_1_6] gi|316923851|gb|EFV45048.1| glycyl-radical enzyme activating family protein [Bilophila wadsworthia 3_1_6] Length = 296 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 33/103 (32%), Gaps = 19/103 (18%) Query: 19 AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78 + F ++ P+ S F+ + C+ C CE ICP A+ Sbjct: 18 GLRTTV---FLKGCPLHCPWCSNPESQSFKPQLMFF-----SNLCVGCGACERICPNGAV 69 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 Y+ D C CGLC E+CP A Sbjct: 70 VKIGD-----------VYNRDRSICTDCGLCVESCPSKAREMS 101 >gi|310778437|ref|YP_003966770.1| hydrogenase, Fe-only [Ilyobacter polytropus DSM 2926] gi|309747760|gb|ADO82422.1| hydrogenase, Fe-only [Ilyobacter polytropus DSM 2926] Length = 572 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 3/67 (4%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY---DIDMIKCIYCGLCQEACPV 115 +CI C+ C A+C DG + V ++ KCI CG C + CPV Sbjct: 141 DMNKCIKCEKCVAVCKDIQGIGVYDVEVVDGEKEIVLVGGKNLSETKCISCGQCVKVCPV 200 Query: 116 DAIVEGP 122 A+VE Sbjct: 201 GALVENN 207 >gi|298675829|ref|YP_003727579.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein [Methanohalobium evestigatum Z-7303] gi|298288817|gb|ADI74783.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanohalobium evestigatum Z-7303] Length = 541 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 40/143 (27%), Gaps = 28/143 (19%) Query: 1 MRIFRCNVSFLFLKEF---VGAF-------FLCLRYFFKAKTTINYP--FEKGSTSPRFR 48 M ++ E L K + P ++ Sbjct: 400 MMATSETFKNFYIFELSYWTQGMPIETYNEMLGFYNLPKLPEMVRNPVIEKRVEKDIANV 459 Query: 49 GEHALRRYPN-------GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 G+ + N + CI C CE CP AITI + + + Sbjct: 460 GKEGIETIGNVGIILEEITDGCIFCHKCEEECPEDAITILDTDEG-------LIANYNAQ 512 Query: 102 KCIY--CGLCQEACPVDAIVEGP 122 +C+ C C CPV+AI Sbjct: 513 RCLGTSCRRCVGICPVNAIKYED 535 >gi|257063357|ref|YP_003143029.1| dissimilatory sulfite reductase (desulfoviridin), alpha/beta subunit [Slackia heliotrinireducens DSM 20476] gi|256791010|gb|ACV21680.1| dissimilatory sulfite reductase (desulfoviridin), alpha/beta subunit [Slackia heliotrinireducens DSM 20476] Length = 425 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 20/53 (37%), Gaps = 11/53 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C A C + I R ID KCI CG C CP +AI Sbjct: 36 CNRCAAACVSGCINTHDN-----------RIAIDAEKCIGCGTCATVCPTEAI 77 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 15/89 (16%), Positives = 24/89 (26%), Gaps = 27/89 (30%) Query: 59 GEERCIACKLCEAICPAQA---------------------------ITIESGPRCHDGTR 91 + C C++C CP A T + P + Sbjct: 290 DQNLCNGCQMCAVFCPTAAIAKRVDENPSAAPAKLYRAPSNPNRTSQTAQDKPAFANPFA 349 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + + C+ CG C CP A+ Sbjct: 350 KRTQLLHAPSLCVQCGTCAAICPKHAVRL 378 >gi|209521899|ref|ZP_03270571.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia sp. H160] gi|209497674|gb|EDZ97857.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia sp. H160] Length = 173 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 23/64 (35%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ CI C LC CP AI + + C C LC CPVD I Sbjct: 83 DEQVCIGCTLCMQACPVDAIVGAPKQ----------MHTVIAELCTGCDLCVPPCPVDCI 132 Query: 119 VEGP 122 P Sbjct: 133 AMLP 136 Score = 35.1 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 14/21 (66%), Positives = 15/21 (71%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C LC +ACPVDAI Sbjct: 82 IDEQVCIGCTLCMQACPVDAI 102 >gi|253701525|ref|YP_003022714.1| electron transfer flavoprotein subunit alpha [Geobacter sp. M21] gi|251776375|gb|ACT18956.1| Electron transfer flavoprotein alpha subunit [Geobacter sp. M21] Length = 452 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 44/122 (36%), Gaps = 30/122 (24%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACK-LCEAICPAQAITIESGPRCHDGTRRTVRYD 97 E + RG+ L E +CIAC C++ CP I + Sbjct: 3 EAKPKLKKPRGKVRLL-----EGKCIACGARCQSSCPVDGIQMNDAGEP----------Q 47 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIV 157 I++ KCI C C +ACP A+ E++Y KE L + + + Sbjct: 48 IELSKCIGCLKCVKACPGSAL--------------EIFYSKEELEILAALAGQQDLADDE 93 Query: 158 TD 159 D Sbjct: 94 AD 95 >gi|170756656|ref|YP_001780591.1| anaerobic sulfite reductase, subunit C [Clostridium botulinum B1 str. Okra] gi|169121868|gb|ACA45704.1| anaerobic sulfite reductase, subunit C [Clostridium botulinum B1 str. Okra] Length = 321 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 23/88 (26%), Gaps = 8/88 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + G + + RC+ C+ C C +A Sbjct: 145 CPNDCIKARMHDFGILGMTEPQYDKYRCVGCQACVNNCKKRATGALRFENFKVIRDH--- 201 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPN 123 KCI CG C CP A Sbjct: 202 -----EKCIGCGECVGKCPTGAWTRSKE 224 >gi|134046385|ref|YP_001097870.1| thiamine pyrophosphate binding domain-containing protein [Methanococcus maripaludis C5] gi|132664010|gb|ABO35656.1| thiamine pyrophosphate enzyme domain protein TPP-binding protein [Methanococcus maripaludis C5] Length = 612 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 24/91 (26%), Positives = 34/91 (37%), Gaps = 17/91 (18%) Query: 38 FEKGSTSPRFRGEHA-----LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 G ++ FRG ++Y + +C +CK+C AIT+ Sbjct: 533 EYNGPSAVVFRGNCVSLVKSTKKYVIDKNKCTSCKICVERLGCPAITLSEKIPE------ 586 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 M C CGLC+ CP DAI E Sbjct: 587 ------IMETCTGCGLCKAVCPADAINEVDE 611 >gi|15642974|ref|NP_228016.1| NADP-reducing hydrogenase, subunit D, putative [Thermotoga maritima MSB8] gi|4980698|gb|AAD35293.1|AE001705_4 NADP-reducing hydrogenase, subunit D, putative [Thermotoga maritima MSB8] Length = 608 Score = 46.2 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 3/65 (4%) Query: 59 GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDI--DMIKCIYCGLCQEACPV 115 +CI C+ C C Q + I S T +D+ CI CG C CP Sbjct: 170 DLSKCIKCQRCVRACSELQGMHIYSMVERGHRTYPGTPFDMPVYETDCIGCGQCAAFCPT 229 Query: 116 DAIVE 120 AIVE Sbjct: 230 GAIVE 234 >gi|325972134|ref|YP_004248325.1| hydrogenase, Fe-only [Spirochaeta sp. Buddy] gi|324027372|gb|ADY14131.1| hydrogenase, Fe-only [Spirochaeta sp. Buddy] Length = 582 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 22/68 (32%), Gaps = 3/68 (4%) Query: 59 GEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 E+CI C C +C G ++ C+ CG C CPV Sbjct: 144 DPEKCIKCGRCVQVCQDLQGVFALEFIGRGDETCMAPAAMLKLEDSPCVRCGQCAAHCPV 203 Query: 116 DAIVEGPN 123 AI E Sbjct: 204 GAIYEKDE 211 >gi|317489724|ref|ZP_07948227.1| 4Fe-4S binding domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|316911190|gb|EFV32796.1| 4Fe-4S binding domain-containing protein [Eggerthella sp. 1_3_56FAA] Length = 394 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 11/53 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C +C + I+ + I+ +CI CG C CP A+ Sbjct: 36 CMKCADVCTSGCISYDDNELV-----------IEPERCIGCGTCATVCPTCAL 77 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 6/65 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+C +C++C CP AI + G + C+ C C + CP A+ Sbjct: 291 DPEKCSSCQMCATFCPTGAIAKYADEDGSIG------VTHRPVDCVKCRCCTDICPEGAL 344 Query: 119 VEGPN 123 Sbjct: 345 ELSDE 349 >gi|317471698|ref|ZP_07931039.1| iron only hydrogenase large subunit domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316900802|gb|EFV22775.1| iron only hydrogenase large subunit domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 561 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 23/82 (28%), Gaps = 3/82 (3%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---YDIDMIKCIYCGLCQE 111 +CI C C C + D+ C+ CG C+ Sbjct: 137 CIIRDPNKCILCGDCVRTCDEIQGMGILDFAFRGSKMQVTTAFNKDLAQTDCVGCGQCRA 196 Query: 112 ACPVDAIVEGPNFEFATETRQE 133 CP AI + E E + Sbjct: 197 VCPTGAITIKQDIERVWEALSD 218 >gi|312886520|ref|ZP_07746128.1| dihydropyrimidine dehydrogenase (NADP+) ;dihydrouracil dehydrogenase (NAD+) ;dihydroorotate oxidase B, catalytic subunit [Mucilaginibacter paludis DSM 18603] gi|311300923|gb|EFQ77984.1| dihydropyrimidine dehydrogenase (NADP+) ;dihydrouracil dehydrogenase (NAD+) ;dihydroorotate oxidase B, catalytic subunit [Mucilaginibacter paludis DSM 18603] Length = 422 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 25/71 (35%), Gaps = 5/71 (7%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + +++C+ C LC C T G Y I +C+ C LC Sbjct: 331 NYHVIANINQDKCVHCGLCYIACED---TSHQSIALDYGKPYNK-YTIKEEECVGCNLCN 386 Query: 111 EACPV-DAIVE 120 CPV D I Sbjct: 387 LVCPVDDCITM 397 >gi|170726903|ref|YP_001760929.1| electron transport complex protein RnfB [Shewanella woodyi ATCC 51908] gi|169812250|gb|ACA86834.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella woodyi ATCC 51908] Length = 189 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 24/85 (28%), Gaps = 10/85 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 + + E+ CI C C CP AI + + Sbjct: 90 VEPEPLTVSEEVQVKKVAYIREDECIGCTKCIQACPVDAILGTGKQ----------MHTV 139 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPN 123 C C LC CPVD I P Sbjct: 140 ITDYCTGCDLCVAPCPVDCIDMLPI 164 >gi|77463755|ref|YP_353259.1| dihydropyrimidine dehydrogenase [Rhodobacter sphaeroides 2.4.1] gi|77388173|gb|ABA79358.1| dihydroorotate oxidase B, catalytic subunit / dihydropyrimidine dehydrogenase (NADP+) / dihydrouracil dehydrogenase (NAD+) [Rhodobacter sphaeroides 2.4.1] Length = 434 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 8/76 (10%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI C C A C E + + +C+ Sbjct: 330 QYLNLNYVTKAEIDQDLCIKCGRCYAAC-------EDTSHQAIAMSTDRTFTVKDEECVA 382 Query: 106 CGLCQEACPV-DAIVE 120 C LC + CPV D I Sbjct: 383 CNLCVDVCPVEDCITM 398 >gi|21674446|ref|NP_662511.1| pyruvate flavodoxin/ferrodoxin oxidoreductase [Chlorobium tepidum TLS] gi|21647632|gb|AAM72853.1| pyruvate flavodoxin/ferrodoxin oxidoreductase [Chlorobium tepidum TLS] Length = 1185 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 22/71 (30%), Gaps = 16/71 (22%) Query: 60 EERCIACKLCEAICPAQAITIESGP----------------RCHDGTRRTVRYDIDMIKC 103 E CI C C +CP AI I+ + + I C Sbjct: 691 PELCIECGKCSMVCPHAAIRIKVYEPKHLENAPATFKSLDAKAKNWEGMRYTVQIAPEDC 750 Query: 104 IYCGLCQEACP 114 C LC ACP Sbjct: 751 TGCQLCVNACP 761 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 10/27 (37%), Positives = 11/27 (40%), Gaps = 1/27 (3%) Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEF 126 CI CG C CP AI +E Sbjct: 691 PELCIECGKCSMVCPHAAIRI-KVYEP 716 >gi|134298016|ref|YP_001111512.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfotomaculum reducens MI-1] gi|134050716|gb|ABO48687.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Desulfotomaculum reducens MI-1] Length = 1010 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + +C+AC +C +CPA+A T+ + R + DI+ C CG C +C Sbjct: 935 YVDKRKCMACGVCVEVCPAKAATLVTDERGN------TVADINPALCKGCGACSSSCRCG 988 Query: 117 AIV 119 AI Sbjct: 989 AIN 991 Score = 40.9 bits (94), Expect = 0.067, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 26/98 (26%), Gaps = 16/98 (16%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPA---QAITIESGPRCHDGTRRTVR----Y 96 F+ + +C C C CP A R Y Sbjct: 91 PGNFKVTIRTKARYIDVNKCTGCGSCAEACPVKVDDAFNQGLNKRKAIYKLYAQAFPNAY 150 Query: 97 DIDMIKCIY---------CGLCQEACPVDAIVEGPNFE 125 ID KC+ CG C +AC AI E Sbjct: 151 AIDSSKCLKFKNLSNDKLCGKCIKACQAGAINHHMQDE 188 Score = 40.9 bits (94), Expect = 0.068, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 30/86 (34%), Gaps = 9/86 (10%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCI------ACKLC---EAICPAQAITIESGPRCHDG 89 E+ N CI C ++ ++ + +E P Sbjct: 37 EREPAIGGTMPMLDKTFPTNDCSMCILSPKLVDCGRHLNVNSMTNSEVVGLEGEPGNFKV 96 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPV 115 T RT ID+ KC CG C EACPV Sbjct: 97 TIRTKARYIDVNKCTGCGSCAEACPV 122 >gi|306821256|ref|ZP_07454869.1| pyruvate:ferredoxin oxidoreductase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550697|gb|EFM38675.1| pyruvate:ferredoxin oxidoreductase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 1179 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 21/70 (30%), Gaps = 16/70 (22%) Query: 61 ERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV-------------RYDIDMIKCI 104 E CI C C +CP AI + + R + C Sbjct: 688 ENCIQCNQCAFVCPHAAIRPYLLDEKQKADAPEGFDTLKAVGKGLEGLEYRIQVSPYDCT 747 Query: 105 YCGLCQEACP 114 CG C + CP Sbjct: 748 GCGNCVDVCP 757 >gi|262396694|ref|YP_003288547.1| formate dehydrogenase-O major subunit [Vibrio sp. Ex25] gi|262340288|gb|ACY54082.1| formate dehydrogenase-O major subunit [Vibrio sp. Ex25] Length = 1387 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 28/84 (33%), Gaps = 19/84 (22%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM------------------ 100 RCI+C C C QA+ R +R D Sbjct: 601 DANRCISCGQCIQACREQAVHGVLSFVSDKNGRPALRPDDRPRFRSDEKGASCSGLTLMG 660 Query: 101 -IKCIYCGLCQEACPVDAIVEGPN 123 C+ CG C +ACP A+V+ + Sbjct: 661 NSNCVQCGACVQACPTGAMVDSRD 684 Score = 33.9 bits (76), Expect = 8.1, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 21/72 (29%), Gaps = 4/72 (5%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P ++ +G G C+ C C CP A+ + Sbjct: 638 PDDRPRFRSDEKGASCSGLTLMGNSNCVQCGACVQACPTGAMVDSRDRSQGRTEQLKAVD 697 Query: 97 DIDMIKCIYCGL 108 I C YCG+ Sbjct: 698 TI----CTYCGV 705 >gi|262375913|ref|ZP_06069144.1| electron transport complex protein [Acinetobacter lwoffii SH145] gi|262309007|gb|EEY90139.1| electron transport complex protein [Acinetobacter lwoffii SH145] Length = 263 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 29/85 (34%), Gaps = 10/85 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E+ + G + E+ CI C C + CP AI + + I Sbjct: 68 EESVWPVQADGRPQRIKAVIREDECIGCTKCISACPVDAIIGSGK----------LMHTI 117 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPN 123 C C LC CPVD I + Sbjct: 118 LTDLCTGCELCIPPCPVDCIDLVED 142 >gi|253742091|gb|EES98943.1| Nitroreductase family protein fused to ferredoxin domain Fd-NR1 [Giardia intestinalis ATCC 50581] Length = 277 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 23/67 (34%), Gaps = 8/67 (11%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 R E+ CI C +C CP Q I + R + CI CG C C Sbjct: 3 RFPEVDEDLCIGCNVCVQGCPTQCIEVNKKTRKLVFRAK--------EACISCGHCASVC 54 Query: 114 PVDAIVE 120 AI Sbjct: 55 RTAAISM 61 >gi|298527852|ref|ZP_07015256.1| Cobyrinic acid ac-diamide synthase [Desulfonatronospira thiodismutans ASO3-1] gi|298511504|gb|EFI35406.1| Cobyrinic acid ac-diamide synthase [Desulfonatronospira thiodismutans ASO3-1] Length = 297 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 22/65 (33%), Gaps = 14/65 (21%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C C LC A C QAI+ + Y + C C LC CP A+ Sbjct: 65 PDLCTGCGLCRAYCRFQAISED--------------YRVMQEHCEGCALCLHVCPESAVS 110 Query: 120 EGPNF 124 Sbjct: 111 MHDRH 115 >gi|225026034|ref|ZP_03715226.1| hypothetical protein EUBHAL_00273 [Eubacterium hallii DSM 3353] gi|224956640|gb|EEG37849.1| hypothetical protein EUBHAL_00273 [Eubacterium hallii DSM 3353] Length = 1185 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 34/111 (30%), Gaps = 19/111 (17%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTR- 91 FE G+++ RG N E CI C C +C I + D + Sbjct: 673 FELGASAYEKRGTAVSVPEWN-PEACIQCNQCAFVCSHATIRPFLVSEDEIKAAPDNMKV 731 Query: 92 ---------RTVRYDIDMIKCIYCGLCQEACP---VDAIVEGPNFEFATET 130 + + C+ CG C CP A+ P A E Sbjct: 732 ADTKPKASEYKFTMSVSPLDCMGCGECITVCPAAAKGALKMVPQESQAAEQ 782 >gi|167042506|gb|ABZ07231.1| putative 4Fe-4S binding domain protein [uncultured marine crenarchaeote HF4000_ANIW133C7] Length = 99 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 1/68 (1%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C LC IC + G +R + +CI G C CP AI Sbjct: 12 QMCIGCALCVEICTTLGPDVLRVKPVE-GWKRGKAFVFYPERCISDGACIGVCPTKAIFW 70 Query: 121 GPNFEFAT 128 +F Sbjct: 71 MRPMDFTV 78 >gi|154495028|ref|ZP_02034033.1| hypothetical protein PARMER_04074 [Parabacteroides merdae ATCC 43184] gi|154085578|gb|EDN84623.1| hypothetical protein PARMER_04074 [Parabacteroides merdae ATCC 43184] Length = 336 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 30/97 (30%), Gaps = 16/97 (16%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P + + CI C C CP +AIT+E+ Sbjct: 193 PKSRRVFVSCVNKDKGGVAKKACANACIGCGKCAKECPFEAITVENN-----------VA 241 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 ID KC C C CP AI E R+E Sbjct: 242 YIDYTKCRLCRKCVAVCPTGAI-----HELNFPPRKE 273 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 8/81 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCH--------DGTRRTVRYDIDMIKCIYCGLCQ 110 E++C +C C CP I + + + V CI CG C Sbjct: 167 DEDKCTSCGACVKACPKNIIELRKKGPKSRRVFVSCVNKDKGGVAKKACANACIGCGKCA 226 Query: 111 EACPVDAIVEGPNFEFATETR 131 + CP +AI N + T+ Sbjct: 227 KECPFEAITVENNVAYIDYTK 247 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 9/60 (15%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C A C AI I ++D KC CG C +ACP + I Sbjct: 140 CLGYGDCVAACNFDAIHINLETGLP---------EVDEDKCTSCGACVKACPKNIIELRK 190 >gi|153940709|ref|YP_001390315.1| anaerobic sulfite reductase, subunit C [Clostridium botulinum F str. Langeland] gi|152936605|gb|ABS42103.1| anaerobic sulfite reductase, subunit C [Clostridium botulinum F str. Langeland] gi|295318405|gb|ADF98782.1| anaerobic sulfite reductase, subunit C [Clostridium botulinum F str. 230613] Length = 321 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 23/88 (26%), Gaps = 8/88 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + G + E RC+ C+ C C +A Sbjct: 145 CPNDCIKARMHDFGILGMTEPQYDEYRCVGCQACVNNCKKRATGALRFENYKVIRDH--- 201 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPN 123 KCI CG C CP A Sbjct: 202 -----EKCIGCGECVGKCPTGAWTRSKE 224 >gi|189346155|ref|YP_001942684.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Chlorobium limicola DSM 245] gi|189340302|gb|ACD89705.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Chlorobium limicola DSM 245] Length = 1186 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 23/98 (23%), Gaps = 24/98 (24%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA--------------- 77 T FEK + + + CI C C +CP A Sbjct: 672 TGTSKFEKRNLAENIPVW--------EPDLCIQCGKCSLVCPHAAIRAKVYDANYLANAP 723 Query: 78 -ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + I C C +C CP Sbjct: 724 KTFKCIDAKGASWAGMKYTIQIAPEDCTGCDMCAHVCP 761 Score = 35.5 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 9/19 (47%), Positives = 9/19 (47%) Query: 100 MIKCIYCGLCQEACPVDAI 118 CI CG C CP AI Sbjct: 691 PDLCIQCGKCSLVCPHAAI 709 >gi|320353242|ref|YP_004194581.1| cobyrinic acid ac-diamide synthase [Desulfobulbus propionicus DSM 2032] gi|320121744|gb|ADW17290.1| cobyrinic acid ac-diamide synthase [Desulfobulbus propionicus DSM 2032] Length = 301 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 14/62 (22%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C C ++C AIT +++D I+C CG+C + CP AI Sbjct: 64 NPDLCTGCGTCRSLCRFGAIT--------------EAFEVDPIRCEGCGVCVDFCPEAAI 109 Query: 119 VE 120 Sbjct: 110 DF 111 >gi|225389590|ref|ZP_03759314.1| hypothetical protein CLOSTASPAR_03338 [Clostridium asparagiforme DSM 15981] gi|225044343|gb|EEG54589.1| hypothetical protein CLOSTASPAR_03338 [Clostridium asparagiforme DSM 15981] Length = 258 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 23/68 (33%), Gaps = 11/68 (16%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + E CI C LC CPA I I+ + CI CG C C Sbjct: 5 HQIRINPETCIGCGLCRRDCPAGNIRIKDKKA-----------KVITQDCIMCGHCVAIC 53 Query: 114 PVDAIVEG 121 P A+ Sbjct: 54 PKAAVSMT 61 Score = 34.7 bits (78), Expect = 4.5, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 14/33 (42%) Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + + I+ CI CGLC+ CP I Sbjct: 1 MKNKHQIRINPETCIGCGLCRRDCPAGNIRIKD 33 >gi|218262922|ref|ZP_03477229.1| hypothetical protein PRABACTJOHN_02909 [Parabacteroides johnsonii DSM 18315] gi|218223064|gb|EEC95714.1| hypothetical protein PRABACTJOHN_02909 [Parabacteroides johnsonii DSM 18315] Length = 315 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 30/97 (30%), Gaps = 16/97 (16%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P + + CI C C CP +AIT+E+ Sbjct: 193 PKSRRIFVSCVNKDKGGVAKKACANACIGCGKCAKECPFEAITVENN-----------VA 241 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 ID KC C C CP AI E R+E Sbjct: 242 YIDYTKCRLCRKCVAVCPTGAI-----HELNFPPRKE 273 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 8/81 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------DMIKCIYCGLCQ 110 E++C +C C CP I + + CI CG C Sbjct: 167 DEDKCTSCGACVKACPKNIIELRKKGPKSRRIFVSCVNKDKGGVAKKACANACIGCGKCA 226 Query: 111 EACPVDAIVEGPNFEFATETR 131 + CP +AI N + T+ Sbjct: 227 KECPFEAITVENNVAYIDYTK 247 Score = 35.5 bits (80), Expect = 2.3, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 9/60 (15%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C A C AI I ++D KC CG C +ACP + I Sbjct: 140 CLGYGDCVAACNFDAIHINLETGLP---------EVDEDKCTSCGACVKACPKNIIELRK 190 >gi|254487985|ref|ZP_05101190.1| formate dehydrogenase, alpha subunit [Roseobacter sp. GAI101] gi|214044854|gb|EEB85492.1| formate dehydrogenase, alpha subunit [Roseobacter sp. GAI101] Length = 922 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 6/81 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID----MIKCIYCGLCQEACP 114 + CI C LC C + + G +D+ C+ CG C +ACP Sbjct: 147 NLDACIQCNLCVRACR-EVQVNDVIGMSGRGHDSYPTFDMADPMGASSCVACGECVQACP 205 Query: 115 VDAIVEGPNFEFA-TETRQEL 134 A++E + A R + Sbjct: 206 TGALMEATVVDDAQVGDRADF 226 >gi|254427723|ref|ZP_05041430.1| electron transport complex, RnfABCDGE type, B subunit subfamily [Alcanivorax sp. DG881] gi|196193892|gb|EDX88851.1| electron transport complex, RnfABCDGE type, B subunit subfamily [Alcanivorax sp. DG881] Length = 194 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 10/64 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E+ CI C C CP AI + + + + + +C C LC E CPVD Sbjct: 110 YIREDECIGCTKCIQACPVDAIVGAAK----------LMHTVIVDECTGCDLCVEPCPVD 159 Query: 117 AIVE 120 I Sbjct: 160 CIDM 163 >gi|188584735|ref|YP_001916280.1| Fe-S cluster domain protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349422|gb|ACB83692.1| Fe-S cluster domain protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 460 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 25/64 (39%), Positives = 30/64 (46%), Gaps = 12/64 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA-IV 119 E CI C C CP QAI I+ G R +I +CI CG C + CP +A I Sbjct: 13 ESCIGCVHCLKFCPTQAIRIKGG-----------RAEILKERCIDCGGCIQICPNNAKIA 61 Query: 120 EGPN 123 E N Sbjct: 62 ESDN 65 >gi|116235070|dbj|BAF34984.1| trichloroethene reductive dehalogenase [uncultured Dehalococcoides sp.] Length = 554 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 3/60 (5%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID---MIKCIYCGLCQEACPVD 116 E C C +C CP QAI+ E Y+ KCI C C+ CP Sbjct: 434 REFCKTCGICAEHCPTQAISHEGPRYDSPYWDNVSGYEGWHLDYHKCINCTNCETFCPFF 493 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%) Query: 103 CIYCGLCQEACPVDAI-VEGPNFE 125 C CG+C E CP AI EGP ++ Sbjct: 437 CKTCGICAEHCPTQAISHEGPRYD 460 >gi|116235056|dbj|BAF34977.1| trichloroethene reductive dehalogenase [uncultured Dehalococcoides sp.] gi|116235060|dbj|BAF34979.1| trichloroethene reductive dehalogenase [uncultured Dehalococcoides sp.] gi|116235068|dbj|BAF34983.1| trichloroethene reductive dehalogenase [uncultured Dehalococcoides sp.] Length = 554 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 3/60 (5%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID---MIKCIYCGLCQEACPVD 116 E C C +C CP QAI+ E Y+ KCI C C+ CP Sbjct: 434 REFCKTCGICAEHCPNQAISHEGPRYDSPYWDNVSGYEGWHLDYHKCINCTNCETFCPFF 493 >gi|116695639|ref|YP_841215.1| tungsten-containing formate dehydrogenase alpha subunit [Ralstonia eutropha H16] gi|113530138|emb|CAJ96485.1| Tungsten-containing formate dehydrogenase alpha subunit [Ralstonia eutropha H16] Length = 938 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 30/78 (38%), Gaps = 5/78 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM----IKCIYCGLCQEACP 114 + CI C C C + + G + +D+D C+ CG C +ACP Sbjct: 154 NLDACIQCTRCLRACRDE-QVNDVIGLALRGDEARIVFDMDDPMGVSTCVACGECVQACP 212 Query: 115 VDAIVEGPNFEFATETRQ 132 A++ + A +Q Sbjct: 213 TGALMPARDAALAVPDKQ 230 >gi|147918956|ref|YP_687318.1| formate dehydrogenase, beta subunit [uncultured methanogenic archaeon RC-I] gi|110622714|emb|CAJ37992.1| formate dehydrogenase, beta subunit [uncultured methanogenic archaeon RC-I] Length = 414 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 25/75 (33%), Gaps = 9/75 (12%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIE---------SGPRCHDGTRRTVRYDID 99 G L+ RCI C C CP T G + +R+ Sbjct: 281 GTERLQAIMKETSRCIRCYACIENCPICYCTECSTKKPYLVTPGEVPPNFMFHMIRFMHV 340 Query: 100 MIKCIYCGLCQEACP 114 CI CG C+E CP Sbjct: 341 SDSCINCGQCEELCP 355 >gi|78059775|ref|YP_366350.1| dihydropyrimidine dehydrogenase [Burkholderia sp. 383] gi|77964325|gb|ABB05706.1| dihydroorotate oxidase B, catalytic subunit / dihydrouracil dehydrogenase (NAD+) / dihydropyrimidine dehydrogenase (NADP+) [Burkholderia sp. 383] Length = 438 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 6/63 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117 ++RCI C LC C + ++ DG R +++ +C+ C LC CPV Sbjct: 341 DQDRCIQCGLCHIACED--TSHQAITATKDGVR---HFEVVDSECVGCNLCMHVCPVEQC 395 Query: 118 IVE 120 I Sbjct: 396 ITM 398 >gi|27367730|ref|NP_763257.1| formate dehydrogenase subunit alpha [Vibrio vulnificus CMCP6] gi|27359302|gb|AAO08247.1| formate dehydrogenase, alpha subunit [Vibrio vulnificus CMCP6] Length = 1399 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 11/71 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM-----------IKCIYCG 107 RCI+C C C Q++ + R VR D +C+ CG Sbjct: 631 DANRCISCGQCIQACREQSVQGVLSFMNLEKGRPVVRPDCRPNFGGQGVRMGDSRCVQCG 690 Query: 108 LCQEACPVDAI 118 C +ACPV A+ Sbjct: 691 ACVQACPVGAM 701 Score = 38.2 bits (87), Expect = 0.41, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 4/69 (5%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 + P R + G+ RC+ C C CP A+T T I Sbjct: 663 RPVVRPDCRPNFGGQGVRMGDSRCVQCGACVQACPVGAMTDARDRSQGRETPLKKVDTI- 721 Query: 100 MIKCIYCGL 108 C YCG+ Sbjct: 722 ---CTYCGV 727 >gi|242027230|gb|ACS75682.1| hydrogenase I [Clostridium sp. IBUN 158B] Length = 287 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 3/78 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPV 115 +C+ C C A C + T R+ + D C+ CG C ACPV Sbjct: 59 DRSKCVLCGRCVAACKEKTGTGNIEIAGKGPDRKVQAIEGKCFDETNCLLCGQCVAACPV 118 Query: 116 DAIVEGPNFEFATETRQE 133 A+ E P+ + E ++ Sbjct: 119 AALNEKPHIDRVKEALED 136 >gi|257063524|ref|YP_003143196.1| NADH:ubiquinone oxidoreductase chain I-like protein [Slackia heliotrinireducens DSM 20476] gi|256791177|gb|ACV21847.1| NADH:ubiquinone oxidoreductase chain I-like protein [Slackia heliotrinireducens DSM 20476] Length = 447 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 29/72 (40%), Gaps = 7/72 (9%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G + + + C AC +C +CP +I G Y+ C+ CG+ Sbjct: 304 GHYLWPEHIVDKSICRACGVCMQMCPTGSIHHTLGDGE-------FVYEFSPGTCVNCGV 356 Query: 109 CQEACPVDAIVE 120 C +CP +AI Sbjct: 357 CVASCPKEAIKH 368 Score = 33.5 bits (75), Expect = 8.8, Method: Composition-based stats. Identities = 9/42 (21%), Positives = 14/42 (33%) Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 G + +D C CG+C + CP +I Sbjct: 295 WRHSESVQGGHYLWPEHIVDKSICRACGVCMQMCPTGSIHHT 336 >gi|167761075|ref|ZP_02433202.1| hypothetical protein CLOSCI_03473 [Clostridium scindens ATCC 35704] gi|167661309|gb|EDS05439.1| hypothetical protein CLOSCI_03473 [Clostridium scindens ATCC 35704] Length = 248 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 41/114 (35%), Gaps = 6/114 (5%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E + ++ R P E+CI C LC C + S + + YD Sbjct: 101 EIKALCKQYGAMDGSRFAPIEGEKCIMCGLCARACASLGTGAISTVMRGTSKKISTPYDE 160 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEI 152 CI C C + CP AI +FA + ++ + +E L + I Sbjct: 161 PSSACIGCLSCAKICPTRAI------DFAEDEKKRSIWGREFELIRCKECGAPI 208 >gi|167585883|ref|ZP_02378271.1| electron transport complex, RnfABCDGE type, B subunit [Burkholderia ubonensis Bu] Length = 158 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 26/81 (32%), Gaps = 10/81 (12%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 +P E A E CI C LC CP AI + + Sbjct: 66 PLNPVNGDERARPVAVIDENLCIGCTLCMQACPVDAIAGAPKQ----------MHTVIAS 115 Query: 102 KCIYCGLCQEACPVDAIVEGP 122 C C LC CPVD I P Sbjct: 116 LCTGCDLCVPPCPVDCIAMVP 136 >gi|73670448|ref|YP_306463.1| indolepyruvate ferredoxin oxidoreductase subunit alpha [Methanosarcina barkeri str. Fusaro] gi|72397610|gb|AAZ71883.1| indolepyruvate ferredoxin oxidoreductase, subunit alpha [Methanosarcina barkeri str. Fusaro] Length = 635 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 12/68 (17%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + Y E C C C A+ ++ + C CGLC + C Sbjct: 576 KHYEINPEACTGCGFCIKELGCPALNLDGDKP------------VIQDNCSGCGLCAQIC 623 Query: 114 PVDAIVEG 121 P +AI G Sbjct: 624 PSEAICIG 631 Score = 34.3 bits (77), Expect = 5.6, Method: Composition-based stats. Identities = 8/26 (30%), Positives = 12/26 (46%), Gaps = 2/26 (7%) Query: 91 RRTVRYDIDMIKCIYCGLCQEA--CP 114 + Y+I+ C CG C + CP Sbjct: 573 KPDKHYEINPEACTGCGFCIKELGCP 598 >gi|332704369|ref|ZP_08424457.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfovibrio africanus str. Walvis Bay] gi|332554518|gb|EGJ51562.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfovibrio africanus str. Walvis Bay] Length = 582 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 24/67 (35%), Gaps = 13/67 (19%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 E+CI C C+ CP QAI + H +CI C +C C Sbjct: 245 VWRRRVSEKCIECGKCQRACPMQAIADDPHATRH-------------GECILCRVCAGVC 291 Query: 114 PVDAIVE 120 P AI Sbjct: 292 PTGAIDF 298 Score = 41.2 bits (95), Expect = 0.046, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 28/82 (34%), Gaps = 11/82 (13%) Query: 41 GSTSPRFRGEHALRRYPNGEERC------IACKLCEAICPAQAITIESGPRCHDGTRRTV 94 + R L E C C +C+ +CP A+ ++ P Sbjct: 418 RPLPLQERVWAKLGTAEVNRETCLAWKDKKKCLVCDEVCPYGAVELKPEPGNPVY----- 472 Query: 95 RYDIDMIKCIYCGLCQEACPVD 116 +D +C CG C+ CPV Sbjct: 473 VPHVDEKRCAGCGYCEHFCPVR 494 Score = 40.5 bits (93), Expect = 0.077, Method: Composition-based stats. Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 7/55 (12%) Query: 68 LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C +CPA A R R + KCI CG CQ ACP+ AI + P Sbjct: 226 WCRYVCPAGASLALLSRRPVWRRRVS-------EKCIECGKCQRACPMQAIADDP 273 Score = 35.5 bits (80), Expect = 2.6, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 27/87 (31%), Gaps = 7/87 (8%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 RC+ C C CP I G + +C C +ACP AI Sbjct: 360 SRCMRCGQCALACPTNIIQPVWFSSGVLGVFSPGLTPVRGFCDPHCHQCGKACPTLAIRP 419 Query: 121 GPNFE-------FATETRQELYYDKER 140 P E A R+ K++ Sbjct: 420 LPLQERVWAKLGTAEVNRETCLAWKDK 446 Score = 34.3 bits (77), Expect = 5.5, Method: Composition-based stats. Identities = 9/23 (39%), Positives = 13/23 (56%) Query: 97 DIDMIKCIYCGLCQEACPVDAIV 119 D + +C+ CG C ACP + I Sbjct: 356 DEFLSRCMRCGQCALACPTNIIQ 378 >gi|325269239|ref|ZP_08135858.1| pyruvate-ferredoxin oxidoreductase [Prevotella multiformis DSM 16608] gi|324988468|gb|EGC20432.1| pyruvate-ferredoxin oxidoreductase [Prevotella multiformis DSM 16608] Length = 1191 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 39/123 (31%), Gaps = 21/123 (17%) Query: 12 FLKEFVGAFFLCLRYFFK-----AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIAC 66 F+KE V K T++ + G+ + RG A E CI C Sbjct: 637 FVKELVRPMNAQAGDLLKVSDFVKHNTVDGTWSVGTAAYDKRGVAAFVPTW-DAENCIQC 695 Query: 67 KLCEAICPAQAITI---ESGPRCHDGTR------------RTVRYDIDMIKCIYCGLCQE 111 C +CP I + + R ++ ++ C CG C + Sbjct: 696 NKCSFVCPHACIRPFVLDEQEKAGFNEPTLDVLAPKQLKGMQFRIEVSVLDCTGCGNCAD 755 Query: 112 ACP 114 CP Sbjct: 756 VCP 758 >gi|294495156|ref|YP_003541649.1| nitrite and sulphite reductase 4Fe-4S region [Methanohalophilus mahii DSM 5219] gi|292666155|gb|ADE36004.1| nitrite and sulphite reductase 4Fe-4S region [Methanohalophilus mahii DSM 5219] Length = 274 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 38/92 (41%), Gaps = 12/92 (13%) Query: 28 FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH 87 FK T P G + R E C+AC LCE IC A AI+I++G Sbjct: 124 FKIAIT-GCPASCMKPQENDFGIMGVVRPEWIENNCVACGLCEKICKADAISIDNGQ--- 179 Query: 88 DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 DID CI+CG C +C AI Sbjct: 180 --------LDIDSNSCIFCGECISSCKKSAIN 203 >gi|322419374|ref|YP_004198597.1| NADH dehydrogenase (quinone) [Geobacter sp. M18] gi|320125761|gb|ADW13321.1| NADH dehydrogenase (quinone) [Geobacter sp. M18] Length = 489 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 10/67 (14%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 AL Y +C+ C C +CP I+ ++ + ID CI CG C E Sbjct: 430 ALLEYFVVAAKCVGCTACARVCPVSCISGKAKE----------VHLIDQNSCIKCGACIE 479 Query: 112 ACPVDAI 118 C AI Sbjct: 480 RCKFGAI 486 Score = 40.1 bits (92), Expect = 0.10, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 14/47 (29%) Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 A I + Y + KC+ C C CPV I Sbjct: 410 FADEYAAHINEKKCPAGVCTALLEYFVVAAKCVGCTACARVCPVSCI 456 >gi|284030067|ref|YP_003379998.1| formate dehydrogenase subunit alpha [Kribbella flavida DSM 17836] gi|283809360|gb|ADB31199.1| formate dehydrogenase, alpha subunit [Kribbella flavida DSM 17836] Length = 971 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 27/80 (33%), Gaps = 5/80 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114 + CI C C C + R G + +D + C+ CG C ACP Sbjct: 157 NHDSCILCDRCVRACD-DVQGNDVIGRSGKGYSTRIAFDLDDPMGQSSCVTCGECVSACP 215 Query: 115 VDAIVEGPNFEFATETRQEL 134 A+ + R+ L Sbjct: 216 TGALTNKAINSIPIQPRETL 235 >gi|227824895|ref|ZP_03989727.1| ferredoxin [Acidaminococcus sp. D21] gi|226905394|gb|EEH91312.1| ferredoxin [Acidaminococcus sp. D21] Length = 429 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 25/67 (37%), Gaps = 11/67 (16%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 L E+RC C LC C QAI + G I +CI CG C Sbjct: 5 YLNSVRVEEDRCTGCLLCVKKCLVQAIRVRDGKAV-----------IISDRCIDCGECIR 53 Query: 112 ACPVDAI 118 CP AI Sbjct: 54 CCPTRAI 60 >gi|298529637|ref|ZP_07017040.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfonatronospira thiodismutans ASO3-1] gi|298511073|gb|EFI34976.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfonatronospira thiodismutans ASO3-1] Length = 652 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 7/64 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RCI C C +CP A+ R + ++ C CG+C CP AI Sbjct: 580 DINRCIGCGKCIQVCPFGAVK-------EVDFRGQPKAEVIETVCQGCGICTATCPQGAI 632 Query: 119 VEGP 122 Sbjct: 633 QLSH 636 Score = 40.9 bits (94), Expect = 0.057, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 31/106 (29%), Gaps = 13/106 (12%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR--------CHDG 89 E G F + + + C C LC CPA+ T Sbjct: 217 EEVGGYVGNFEVKIKKKPAYVNWDLCTGCGLCMEKCPAKKSTDYFNENLGKTTAINIPFP 276 Query: 90 TRRTVRYDIDMIKCI-----YCGLCQEACPVDAIVEGPNFEFATET 130 + ID C C +C + CP AI EF TE Sbjct: 277 QAIPKKAVIDPDFCRQFTKGKCSVCAKLCPTKAIDFEQQEEFVTEQ 322 >gi|223984137|ref|ZP_03634289.1| hypothetical protein HOLDEFILI_01581 [Holdemania filiformis DSM 12042] gi|223963931|gb|EEF68291.1| hypothetical protein HOLDEFILI_01581 [Holdemania filiformis DSM 12042] Length = 446 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 29/95 (30%), Gaps = 5/95 (5%) Query: 20 FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79 + T + +P L+ P + C+ C C CPA Sbjct: 335 LLIAGGPMMGKTITTDQ----FVITPYSNALTVLKNKPVNQVACLRCGRCSDHCPAGLQP 390 Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + + + ++ CI CG+C CP Sbjct: 391 VRINQAEKSKNVAMLE-KLSIMDCIECGMCSFVCP 424 >gi|209880614|ref|XP_002141746.1| RNase L inhibitor-like protein [Cryptosporidium muris RN66] gi|209557352|gb|EEA07397.1| RNase L inhibitor-like protein, putative [Cryptosporidium muris RN66] Length = 618 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 1/71 (1%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 LR + C K C C + +G C + + I CI CG+C + Sbjct: 18 RLRIAIVNADMCKP-KNCSQECKTFCPVVRTGKLCVEVDSTSKVATISESLCIGCGICVK 76 Query: 112 ACPVDAIVEGP 122 CP DAI Sbjct: 77 KCPYDAITIIN 87 >gi|206896136|ref|YP_002247516.1| dye-linked L-proline dehydrogenase gamma2 subunit [Coprothermobacter proteolyticus DSM 5265] gi|206738753|gb|ACI17831.1| dye-linked L-proline dehydrogenase gamma2 subunit [Coprothermobacter proteolyticus DSM 5265] Length = 161 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 27/82 (32%), Gaps = 12/82 (14%) Query: 42 STSPRFRGEHALRRYPNGEERC---IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 F E L + C I C C CP AI++E I Sbjct: 12 DVMGNFPSEERLLKGFVAVHECYQDIPCNPCVESCPVHAISMEKLTSPPV---------I 62 Query: 99 DMIKCIYCGLCQEACPVDAIVE 120 D KC CG C +CP AI Sbjct: 63 DFDKCTGCGNCVASCPGLAIFL 84 >gi|114567942|ref|YP_755096.1| (Fe) hydrogenase large subunit HymC [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338877|gb|ABI69725.1| (Fe) hydrogenase, large subunit HymC, putative [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 563 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 1/67 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +C C C +C T+ + + + + KC+ CG C CPV AI Sbjct: 138 DPSKCTLCLRCVEMCN-DVQTVGALEIKNGVPQTIDGKALIETKCVMCGQCALVCPVGAI 196 Query: 119 VEGPNFE 125 +E E Sbjct: 197 IENEEVE 203 >gi|50344697|dbj|BAD29951.1| hydrogenase [Clostridium paraputrificum] Length = 582 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 3/78 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPV 115 +CI C C A C + T +G R + D C+ CG C ACPV Sbjct: 143 DRSKCILCGRCAAACTEKTGTSSIKLVNVNGKRIVTPEEQKCFDETNCLLCGQCVAACPV 202 Query: 116 DAIVEGPNFEFATETRQE 133 A+ E + + E ++ Sbjct: 203 GALSEKTHIDRVKEALED 220 Score = 35.1 bits (79), Expect = 3.5, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 29/81 (35%), Gaps = 6/81 (7%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI-----CPAQAIT-IESGPRCHDGTRR 92 EK + R L ++ C + CE + A+A T + R Sbjct: 77 EKVQERVKSRVSTILNKHEFKCGPCPRRENCELLKLVIKTKAKATTPFVVENKEEYVDIR 136 Query: 93 TVRYDIDMIKCIYCGLCQEAC 113 + ID KCI CG C AC Sbjct: 137 SKSITIDRSKCILCGRCAAAC 157 >gi|84489156|ref|YP_447388.1| hypothetical protein Msp_0335 [Methanosphaera stadtmanae DSM 3091] gi|84372475|gb|ABC56745.1| PorD [Methanosphaera stadtmanae DSM 3091] Length = 80 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 14/65 (21%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +++CI+C LC CP I++E ++ D C CG+C E CPVDAI Sbjct: 30 DKDKCISCGLCYLFCPDGCISVE--------------FNHDYDYCKGCGICAEECPVDAI 75 Query: 119 VEGPN 123 Sbjct: 76 KMVRE 80 >gi|82523739|emb|CAI78739.1| predicted NADH:ubiquinone oxidoreductase, subunit RfnB [uncultured gamma proteobacterium] Length = 209 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 10/60 (16%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 CI C C CP AI + + + +C C LC E CPVD I Sbjct: 120 NECIGCTKCIQACPVDAILGAAKQ----------MHTVIASECTGCDLCVEPCPVDCIDM 169 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 14/36 (38%), Positives = 17/36 (47%) Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + TR I +CI C C +ACPVDAI Sbjct: 102 DEEHGEETRGPAVAFIRENECIGCTKCIQACPVDAI 137 >gi|323703139|ref|ZP_08114793.1| sulfite reductase, subunit C [Desulfotomaculum nigrificans DSM 574] gi|323531916|gb|EGB21801.1| sulfite reductase, subunit C [Desulfotomaculum nigrificans DSM 574] Length = 321 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 11/89 (12%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + + G +C+ C+LC CPA A+T D Sbjct: 149 CPNDCVKAHTQDIGIIGQIEPVYEAAKCVGCRLCVKKCPAGALTWTGKEIVRD------- 201 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 +CI CG C ++CP A+ G + Sbjct: 202 ----ADRCIGCGDCADSCPKSALSRGEQY 226 Score = 33.5 bits (75), Expect = 9.9, Method: Composition-based stats. Identities = 9/55 (16%), Positives = 15/55 (27%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 + G + + KC+ C LC + CP A+ Sbjct: 140 YHVKIAITGCPNDCVKAHTQDIGIIGQIEPVYEAAKCVGCRLCVKKCPAGALTWT 194 >gi|323144839|ref|ZP_08079408.1| electron transport complex, RnfABCDGE type, C subunit [Succinatimonas hippei YIT 12066] gi|322415364|gb|EFY06129.1| electron transport complex, RnfABCDGE type, C subunit [Succinatimonas hippei YIT 12066] Length = 633 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 39/112 (34%), Gaps = 11/112 (9%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 CI C C +CP++ + G + + + C CG C CP I Sbjct: 378 RNCIRCGRCARVCPSRLVPYRMYALSKAGDHKKTL-NCGIKDCTECGCCAYVCP-SKIPL 435 Query: 121 GPNF--EFA-------TETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 F E A + R + ++ +L + + E++I + R Sbjct: 436 TSQFRKEKAIIRILDDKQRRTDRAKERMKLHDERLKEEAKIREAKRQAALAR 487 >gi|315923839|ref|ZP_07920068.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC 23263] gi|315622872|gb|EFV02824.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC 23263] Length = 206 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 23/56 (41%), Positives = 26/56 (46%), Gaps = 12/56 (21%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C C +CP QAI Y I C++CGLC E CPVDAI Sbjct: 157 CIGCDTCAGLCPQQAID------------AGTPYAIRQANCLHCGLCFENCPVDAI 200 >gi|304440515|ref|ZP_07400402.1| pyruvate:ferredoxin oxidoreductase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304370993|gb|EFM24612.1| pyruvate:ferredoxin oxidoreductase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 1180 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 28/96 (29%), Gaps = 19/96 (19%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG + E CI C C +CP A + Sbjct: 676 RGIAVDIPHWK-IENCIQCNQCSFVCPHAVIRPFLLDEEEKKNAPETFETKKGIGKGASD 734 Query: 94 VRY--DIDMIKCIYCGLCQEACP--VDAIVEGPNFE 125 Y I + C CG C + CP A+V P E Sbjct: 735 FEYRIQISPLDCTGCGNCAQVCPAKEKALVMIPFEE 770 >gi|294636370|ref|ZP_06714759.1| electron transport complex protein RnfC [Edwardsiella tarda ATCC 23685] gi|291090358|gb|EFE22919.1| electron transport complex protein RnfC [Edwardsiella tarda ATCC 23685] Length = 576 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 1/58 (1%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 P E+ CI C C +CP + + + G + +CI CG C CP Sbjct: 372 PQEEQPCIRCSSCADVCPVRLLPQQLY-WYSRGQEHDKARSHHLQECIECGACAYVCP 428 >gi|254884334|ref|ZP_05257044.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|254837127|gb|EET17436.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] Length = 394 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 6/56 (10%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 E C C C C AI + + I+ KC+ CGLC CPV Sbjct: 7 FESCTGCTACMNSCSHNAIVMAEDAEG------FIFPHINGNKCVECGLCMRVCPV 56 >gi|188588322|ref|YP_001919488.1| hydrogenase-1 [Clostridium botulinum E3 str. Alaska E43] gi|188498603|gb|ACD51739.1| hydrogenase-1 [Clostridium botulinum E3 str. Alaska E43] Length = 576 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 3/70 (4%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPV 115 +C+ C CEA C + T +G ++ D D C+ CG C ACPV Sbjct: 144 DRSKCVLCGRCEAACSEKTATNSIKIIDDNGDKKVATIDGKCFDDTNCLLCGQCIAACPV 203 Query: 116 DAIVEGPNFE 125 DA+ E + E Sbjct: 204 DALSEKSHTE 213 Score = 35.5 bits (80), Expect = 2.3, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 34/100 (34%), Gaps = 6/100 (6%) Query: 20 FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI---CPAQ 76 L + K I EK + + R L ++ C + CE + + Sbjct: 59 LALSCETLVQDKMVIRTDSEKVQEAIKLRVAEMLDKHEFKCGPCKRREDCEFLKLVIKTK 118 Query: 77 AITIES---GPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 A + + R+ ID KC+ CG C+ AC Sbjct: 119 ARANKPFIVKDKSEYVDDRSKSIVIDRSKCVLCGRCEAAC 158 >gi|14521449|ref|NP_126925.1| putative ATPase RIL [Pyrococcus abyssi GE5] gi|5458668|emb|CAB50155.1| ABC transporter ATP-binding protein [Pyrococcus abyssi GE5] Length = 593 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 23/78 (29%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 +R ++C K +C G + I C CG+C Sbjct: 5 MRIAVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYKPIIQEASCTGCGICVHK 64 Query: 113 CPVDAIVEGPNFEFATET 130 CP +AI E E Sbjct: 65 CPFNAISIVNLPEQLDED 82 >gi|331090680|ref|ZP_08339529.1| hypothetical protein HMPREF9477_00172 [Lachnospiraceae bacterium 2_1_46FAA] gi|330400094|gb|EGG79745.1| hypothetical protein HMPREF9477_00172 [Lachnospiraceae bacterium 2_1_46FAA] Length = 250 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 30/97 (30%), Gaps = 13/97 (13%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 F + + PF K +R + P + C C C CPA AI++ + Sbjct: 144 QFIRERIENPKPF-KVPGKKPYRAYGKIPLKPQIKRTCNHCGKCAKECPAGAISMGEYIK 202 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C C CP A P Sbjct: 203 LDK------------NLCISCMRCVAVCPRHARKLSP 227 >gi|325959018|ref|YP_004290484.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanobacterium sp. AL-21] gi|325330450|gb|ADZ09512.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanobacterium sp. AL-21] Length = 252 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 3/64 (4%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ CI C C +C A+++E R +T + ID C+ CG+C+E CPV+AI Sbjct: 160 DKDSCIGCGACANVCGENAVSLE---RRLGSVFKTKKLAIDEDICVACGMCEENCPVEAI 216 Query: 119 VEGP 122 Sbjct: 217 KLEN 220 Score = 41.6 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 31/91 (34%), Gaps = 14/91 (15%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQA--------------ITIESGPRCHDG 89 E L + + C+ C++C CP A + Sbjct: 61 PVNAIDEAKLTKPAKILDNCVKCEICSQTCPVNAIKVIESKSDLEEDVTYKLKTKKVPHR 120 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 T R + D+D +KC CG C + CP AI Sbjct: 121 TLRMEKIDVDPVKCTSCGNCVKFCPTGAIKL 151 Score = 37.0 bits (84), Expect = 0.87, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 11/61 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ C+AC +CE CP +AI +E+G KCI C +C + CPV A+ Sbjct: 197 DEDICVACGMCEENCPVEAIKLENGKIV-----------YSKNKCITCEVCSKKCPVAAL 245 Query: 119 V 119 Sbjct: 246 N 246 Score = 35.1 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 10/58 (17%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C LC CP AI + + + C+ C +C + CPV+AI Sbjct: 48 PECVRCNLCAQECPVNAIDE----------AKLTKPAKILDNCVKCEICSQTCPVNAI 95 >gi|301064797|ref|ZP_07205171.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] gi|300441091|gb|EFK05482.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] Length = 254 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 10/64 (15%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + Y E+C AC +C CP AI + + + ID KCI CG C Sbjct: 170 EEVVSYYIDPEKCKACMICARSCPVDAIVG----------GKNLIHVIDQEKCIKCGTCF 219 Query: 111 EACP 114 EACP Sbjct: 220 EACP 223 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 16/28 (57%), Positives = 18/28 (64%) Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPN 123 Y ID KC C +C +CPVDAIV G N Sbjct: 175 YYIDPEKCKACMICARSCPVDAIVGGKN 202 >gi|291336384|gb|ADD95941.1| hypothetical protein [uncultured organism MedDCM-OCT-S04-C1] Length = 110 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 23/68 (33%), Gaps = 2/68 (2%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR--TVRYDIDMIKCIYCGLCQEACP 114 E+ CI C C +C AI + + I C C LC ACP Sbjct: 42 WVSEKLCIGCDQCTIVCDDDAIELYFKDMVSPLIEVPSNRKAKIIRDMCTGCRLCVLACP 101 Query: 115 VDAIVEGP 122 DAI Sbjct: 102 TDAITMID 109 >gi|295096018|emb|CBK85108.1| electron transport complex, RnfABCDGE type, B subunit [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 192 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 23/76 (30%), Gaps = 10/76 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI + + + C C LC CP I Sbjct: 113 DEANCIGCTKCIQACPVDAIVGAT----------RAMHTVVADLCTGCNLCVAPCPTQCI 162 Query: 119 VEGPNFEFATETRQEL 134 P + +L Sbjct: 163 ELRPVETTTESWKWDL 178 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C C +ACPVDAI Sbjct: 112 IDEANCIGCTKCIQACPVDAI 132 >gi|219854503|ref|YP_002471625.1| hypothetical protein CKR_1160 [Clostridium kluyveri NBRC 12016] gi|219568227|dbj|BAH06211.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 458 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 20/52 (38%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 CI C C CP + R + D +++ C+ CG C CP Sbjct: 371 CIRCGRCFNACPMSLNPSMLSILGQNNLYREAKEDYNLLDCVECGSCVYVCP 422 >gi|242280740|ref|YP_002992869.1| ferredoxin-dependent glutamate synthase [Desulfovibrio salexigens DSM 2638] gi|242123634|gb|ACS81330.1| ferredoxin-dependent glutamate synthase [Desulfovibrio salexigens DSM 2638] Length = 544 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 29/94 (30%), Gaps = 16/94 (17%) Query: 41 GSTSPRFRGEHALRR-YPNGEERCIACKLCEAICPAQAIT---------------IESGP 84 +P G L ++ C C C ++CP AI ++ Sbjct: 5 RPITPSTLGVKDLNWQIEWDKDLCTQCGRCTSVCPVNAIELGVFRKREIITPAGLMKKAE 64 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 H + CI C +C CP +AI Sbjct: 65 NKHTVFYGIRQKTDPAYACIGCSMCNMVCPNNAI 98 Score = 38.5 bits (88), Expect = 0.32, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 9/54 (16%) Query: 92 RTVRYDIDMIK--CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLN 143 + + + I+ K C CG C CPV+AI G R+ L+ Sbjct: 15 KDLNWQIEWDKDLCTQCGRCTSVCPVNAIELG-----VFRKRE--IITPAGLMK 61 >gi|167752245|ref|ZP_02424372.1| hypothetical protein ALIPUT_00487 [Alistipes putredinis DSM 17216] gi|167660486|gb|EDS04616.1| hypothetical protein ALIPUT_00487 [Alistipes putredinis DSM 17216] Length = 596 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 10/66 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L + + C C LC +CP AI+ Y ID +CI CG C E Sbjct: 538 LMSFVIDPKVCKGCSLCARMCPPGAISGIPKQP----------YAIDQARCIKCGTCLEK 587 Query: 113 CPVDAI 118 C AI Sbjct: 588 CKFGAI 593 Score = 34.3 bits (77), Expect = 5.8, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 16/53 (30%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 E + R + + ID C C LC CP AI P Sbjct: 515 ENFWDEYVAHVRDHHCTAHRCRDLMSFVIDPKVCKGCSLCARMCPPGAISGIP 567 >gi|153953889|ref|YP_001394654.1| hypothetical protein CKL_1264 [Clostridium kluyveri DSM 555] gi|146346770|gb|EDK33306.1| RnfC [Clostridium kluyveri DSM 555] Length = 452 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 20/52 (38%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 CI C C CP + R + D +++ C+ CG C CP Sbjct: 365 CIRCGRCFNACPMSLNPSMLSILGQNNLYREAKEDYNLLDCVECGSCVYVCP 416 >gi|78222168|ref|YP_383915.1| indolepyruvate ferredoxin oxidoreductase subunit alpha [Geobacter metallireducens GS-15] gi|78193423|gb|ABB31190.1| Indolepyruvate ferredoxin oxidoreductase, alpha subunit, putative [Geobacter metallireducens GS-15] Length = 601 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 9/82 (10%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 + F+G+ RR + C C+ C A+ + + R I Sbjct: 526 QPCVVDRTFKGDRPPRRKVAISDACNGCRYCTTQFECPALVYDEEEK---------RVAI 576 Query: 99 DMIKCIYCGLCQEACPVDAIVE 120 D + C CG+C + CP AI E Sbjct: 577 DTLICTDCGVCIDVCPRLAIEE 598 >gi|89897237|ref|YP_520724.1| hypothetical protein DSY4491 [Desulfitobacterium hafniense Y51] gi|219666893|ref|YP_002457328.1| hypothetical protein Dhaf_0829 [Desulfitobacterium hafniense DCB-2] gi|89336685|dbj|BAE86280.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219537153|gb|ACL18892.1| protein of unknown function DUF362 [Desulfitobacterium hafniense DCB-2] Length = 382 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++C+ C C CP QA+ + R ID+ CI C CQE CP A+ Sbjct: 320 NHDQCVGCADCVKNCPPQALRLNDQKRPE----------IDLEACIRCFCCQELCPHQAV 369 Query: 119 VEGP 122 Sbjct: 370 EISK 373 >gi|119774966|ref|YP_927706.1| electron transport complex protein RnfB [Shewanella amazonensis SB2B] gi|166225085|sp|A1S6N0|RNFB_SHEAM RecName: Full=Electron transport complex protein rnfB gi|119767466|gb|ABM00037.1| iron-sulfur cluster-binding protein [Shewanella amazonensis SB2B] Length = 189 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 27/84 (32%), Gaps = 11/84 (13%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E S + Y + CI C C CP AI + + + Sbjct: 91 EPQPLSATTEQQVKKVAYIRE-DECIGCTKCIQACPVDAIVGAGK----------LMHTV 139 Query: 99 DMIKCIYCGLCQEACPVDAIVEGP 122 C C LC E CPVD I P Sbjct: 140 ITQDCTGCDLCVEPCPVDCIDMLP 163 >gi|320158008|ref|YP_004190386.1| anaerobic dehydrogenase [Vibrio vulnificus MO6-24/O] gi|319933320|gb|ADV88183.1| anaerobic dehydrogenase [Vibrio vulnificus MO6-24/O] Length = 1399 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 11/71 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM-----------IKCIYCG 107 RCI+C C C Q++ + R VR D +C+ CG Sbjct: 631 DANRCISCGQCIQACREQSVQGVLSFMNLEKGRPVVRPDCRPNFGGQGVRMGDSRCVQCG 690 Query: 108 LCQEACPVDAI 118 C +ACPV A+ Sbjct: 691 ACVQACPVGAM 701 Score = 38.2 bits (87), Expect = 0.42, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 4/69 (5%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 + P R + G+ RC+ C C CP A+T T I Sbjct: 663 RPVVRPDCRPNFGGQGVRMGDSRCVQCGACVQACPVGAMTDARDRSQGRETPLKKVDTI- 721 Query: 100 MIKCIYCGL 108 C YCG+ Sbjct: 722 ---CTYCGV 727 >gi|303257312|ref|ZP_07343326.1| putative 4Fe-4S binding domain protein [Burkholderiales bacterium 1_1_47] gi|302860803|gb|EFL83880.1| putative 4Fe-4S binding domain protein [Burkholderiales bacterium 1_1_47] Length = 390 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 7/64 (10%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 C C +C +CPA + + + D ++CI C C EACP A+V Sbjct: 290 PNLCNGCNICALLCPAGCLQSKESEN-------NFKLLADPLRCIGCNRCTEACPTQALV 342 Query: 120 EGPN 123 Sbjct: 343 MRKI 346 >gi|302390656|ref|YP_003826477.1| pyruvate ferredoxin oxidoreductase, delta subunit [Thermosediminibacter oceani DSM 16646] gi|302201284|gb|ADL08854.1| pyruvate ferredoxin oxidoreductase, delta subunit [Thermosediminibacter oceani DSM 16646] Length = 125 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 10/89 (11%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 +E G+ + G+ RR ++RCI C +C CP A I + + Sbjct: 36 YEPGNANTYETGDWRSRRPVWNKDRCIHCLMCWRYCP-DASVIAKDGKFETFDYKH---- 90 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 C CG+C + CPV+AI P E Sbjct: 91 -----CKGCGICAKVCPVNAIDMFPEDEI 114 >gi|224825660|ref|ZP_03698764.1| electron transport complex, RnfABCDGE type, B subunit [Lutiella nitroferrum 2002] gi|224601884|gb|EEG08063.1| electron transport complex, RnfABCDGE type, B subunit [Lutiella nitroferrum 2002] Length = 232 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 43/126 (34%), Gaps = 15/126 (11%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 PF P+ R ++ CI C LC CP AI + + Sbjct: 64 IPFAADGPQPKPRALAVIQED-----SCIGCTLCIQACPVDAIVGAAK----------LM 108 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRN 155 + + +C C LC CPVD I P + R+ + ++ + ++ R+ Sbjct: 109 HTVIAAECTGCELCVAPCPVDCIDLVPVDDPDDGKREHVMARAQQARKRYEHHQARKARD 168 Query: 156 IVTDSP 161 + Sbjct: 169 QAEKAQ 174 >gi|126465802|ref|YP_001040911.1| ATPase RIL [Staphylothermus marinus F1] gi|126014625|gb|ABN70003.1| ABC transporter related [Staphylothermus marinus F1] Length = 601 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 22/67 (32%), Gaps = 6/67 (8%) Query: 59 GEERCIA--CK-LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 E C C C CP + + V I CI CG+C + CP Sbjct: 8 DREYCKPNKCNLECIRFCPVNKTKRKKAIELSPDGKHAV---IYEDICIGCGICVKKCPF 64 Query: 116 DAIVEGP 122 +AI Sbjct: 65 NAISIVN 71 >gi|121535147|ref|ZP_01666963.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus carboxydivorans Nor1] gi|121306256|gb|EAX47182.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus carboxydivorans Nor1] Length = 186 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 5/60 (8%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C C +CP+ A+T + GT I +C+ C C + CP AI + P Sbjct: 86 CTLCMKCTQVCPSGALTPIAPQAAKMGTAV-----ILENECVGCDKCIKPCPTGAISKVP 140 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 9/55 (16%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 C+ C C CP AI+ G R +D KC C C +ACPV Sbjct: 119 NECVGCDKCIKPCPTGAISKVPGKRLVL---------VDPAKCTGCMSCVKACPV 164 >gi|85857983|ref|YP_460185.1| heterodisulfide reductase subunit A and related polyferredoxins [Syntrophus aciditrophicus SB] gi|85721074|gb|ABC76017.1| heterodisulfide reductase, subunit A and related polyferredoxins [Syntrophus aciditrophicus SB] Length = 1039 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 7/64 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ C+AC C C AI + + + + + C CGLC CP AI Sbjct: 953 NEKMCMACGACVPACTYGAIEFKETKQG-------KKASVIPVLCKGCGLCNSKCPTGAI 1005 Query: 119 VEGP 122 Sbjct: 1006 QLKH 1009 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 27/91 (29%), Gaps = 4/91 (4%) Query: 28 FKAKTTINYPFEKGSTSPRFRGEHALRR-YPNGEERCIACKLC---EAICPAQAITIESG 83 FK P G + + + + CK E I A+ ++E Sbjct: 42 FKVYFVEKSPTVGGKMAHLDKTFPTNDCSMCIESPKFVECKRHPNIEMITYAEVESVEGE 101 Query: 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 T ID KC C C E CP Sbjct: 102 AGDFTVTVVKKPRYIDESKCTGCTTCVEYCP 132 >gi|37675860|ref|NP_936256.1| anaerobic dehydrogenase [Vibrio vulnificus YJ016] gi|37200399|dbj|BAC96226.1| anaerobic dehydrogenase [Vibrio vulnificus YJ016] Length = 1399 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 11/71 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM-----------IKCIYCG 107 RCI+C C C Q++ + R VR D +C+ CG Sbjct: 631 DANRCISCGQCIQACREQSVQGVLSFMNLEKGRPVVRPDCRPNFGGQGVRMGDSRCVQCG 690 Query: 108 LCQEACPVDAI 118 C +ACPV A+ Sbjct: 691 ACVQACPVGAM 701 Score = 38.2 bits (87), Expect = 0.42, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 4/69 (5%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 + P R + G+ RC+ C C CP A+T T I Sbjct: 663 RPVVRPDCRPNFGGQGVRMGDSRCVQCGACVQACPVGAMTDARDRSQGRETPLKKVDTI- 721 Query: 100 MIKCIYCGL 108 C YCG+ Sbjct: 722 ---CTYCGV 727 >gi|15641524|ref|NP_231156.1| iron-sulfur cluster-binding protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121587222|ref|ZP_01676996.1| iron-sulfur cluster-binding protein [Vibrio cholerae 2740-80] gi|153818533|ref|ZP_01971200.1| iron-sulfur cluster-binding protein [Vibrio cholerae NCTC 8457] gi|153822815|ref|ZP_01975482.1| iron-sulfur cluster-binding protein [Vibrio cholerae B33] gi|227081674|ref|YP_002810225.1| iron-sulfur cluster-binding protein [Vibrio cholerae M66-2] gi|229508536|ref|ZP_04398039.1| iron-sulfur cluster-binding protein [Vibrio cholerae BX 330286] gi|229511393|ref|ZP_04400872.1| iron-sulfur cluster-binding protein [Vibrio cholerae B33] gi|229518532|ref|ZP_04407975.1| iron-sulfur cluster-binding protein [Vibrio cholerae RC9] gi|229607941|ref|YP_002878589.1| iron-sulfur cluster-binding protein [Vibrio cholerae MJ-1236] gi|254848637|ref|ZP_05237987.1| iron-sulfur cluster-binding protein [Vibrio cholerae MO10] gi|262161670|ref|ZP_06030688.1| iron-sulfur cluster-binding protein [Vibrio cholerae INDRE 91/1] gi|298498397|ref|ZP_07008204.1| iron-sulfur cluster-binding protein [Vibrio cholerae MAK 757] gi|9656020|gb|AAF94670.1| iron-sulfur cluster-binding protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121548565|gb|EAX58619.1| iron-sulfur cluster-binding protein [Vibrio cholerae 2740-80] gi|126510936|gb|EAZ73530.1| iron-sulfur cluster-binding protein [Vibrio cholerae NCTC 8457] gi|126519674|gb|EAZ76897.1| iron-sulfur cluster-binding protein [Vibrio cholerae B33] gi|227009562|gb|ACP05774.1| iron-sulfur cluster-binding protein [Vibrio cholerae M66-2] gi|229343221|gb|EEO08196.1| iron-sulfur cluster-binding protein [Vibrio cholerae RC9] gi|229351358|gb|EEO16299.1| iron-sulfur cluster-binding protein [Vibrio cholerae B33] gi|229354490|gb|EEO19413.1| iron-sulfur cluster-binding protein [Vibrio cholerae BX 330286] gi|229370596|gb|ACQ61019.1| iron-sulfur cluster-binding protein [Vibrio cholerae MJ-1236] gi|254844342|gb|EET22756.1| iron-sulfur cluster-binding protein [Vibrio cholerae MO10] gi|262028402|gb|EEY47057.1| iron-sulfur cluster-binding protein [Vibrio cholerae INDRE 91/1] gi|297542730|gb|EFH78780.1| iron-sulfur cluster-binding protein [Vibrio cholerae MAK 757] Length = 553 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 9/75 (12%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C A+CP +A+ + C+ CGLC +ACP + Sbjct: 418 SDCTLCMSCVAVCPTRALHLAGDSPA---------LRFIEQDCVQCGLCVKACPEQVLSA 468 Query: 121 GPNFEFATETRQELY 135 P + RQ + Sbjct: 469 TPQLNWNKAARQGVV 483 Score = 41.6 bits (96), Expect = 0.035, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 14/81 (17%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 C+ C CPA A++ E + R I+ C G C ACP +AI + Sbjct: 186 CERCVDACPAGALSSEGSEQTGH------RIQINPYLCQGVGTCATACPTEAIH----YA 235 Query: 126 FA-TETRQELYYDKERLLNNG 145 Q+ ERLL N Sbjct: 236 LPNPTDTQKFI---ERLLANY 253 Score = 34.3 bits (77), Expect = 5.5, Method: Composition-based stats. Identities = 6/24 (25%), Positives = 8/24 (33%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVE 120 + C C C CP A+ Sbjct: 414 ECQTSDCTLCMSCVAVCPTRALHL 437 >gi|315924580|ref|ZP_07920799.1| electron transport complex protein RnfB [Pseudoramibacter alactolyticus ATCC 23263] gi|315622110|gb|EFV02072.1| electron transport complex protein RnfB [Pseudoramibacter alactolyticus ATCC 23263] Length = 289 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 11/56 (19%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CIAC LCE CP AI +E ID KC CG+C + CP A+ Sbjct: 217 CIACGLCEKNCPFDAIHVEGNLAV-----------IDYSKCTNCGICVKKCPTHAL 261 Score = 42.0 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 5/78 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV-----RYDIDMIKCIYCGLCQEAC 113 C+AC C ICP + + + ++ + CI CGLC++ C Sbjct: 168 NINNCVACGKCVTICPKHVMRLIPKDQIVHVDCQSTEKGKLVRQGCSVGCIACGLCEKNC 227 Query: 114 PVDAIVEGPNFEFATETR 131 P DAI N ++ Sbjct: 228 PFDAIHVEGNLAVIDYSK 245 Score = 34.7 bits (78), Expect = 4.0, Method: Composition-based stats. Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 10/60 (16%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C ++C A+ + +++ C+ CG C CP + P Sbjct: 142 CVGLGSCVSVCEFDALHMTDKQLPE----------VNINNCVACGKCVTICPKHVMRLIP 191 >gi|295108722|emb|CBL22675.1| hypothetical protein [Ruminococcus obeum A2-162] Length = 252 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 33/96 (34%), Gaps = 12/96 (12%) Query: 27 FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC 86 F + + F G +P F ++ CI C C CP I +E+G Sbjct: 153 FSVPRNNLYDRFMSGPVNPIFYQFFVKATAFQTDDTCIGCGQCVKNCPQNNIALENGKP- 211 Query: 87 HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 I +C +C C CP +AI G Sbjct: 212 -----------IWGKQCTHCMACICYCPTEAIEYGK 236 >gi|167767598|ref|ZP_02439651.1| hypothetical protein CLOSS21_02125 [Clostridium sp. SS2/1] gi|167710717|gb|EDS21296.1| hypothetical protein CLOSS21_02125 [Clostridium sp. SS2/1] Length = 266 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 29/88 (32%), Gaps = 12/88 (13%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 + + +R + + P +C +C +C CPA AI+ + Sbjct: 171 VELPGNHNYREYNGVPLKPVANGKCTSCGICAKECPAGAISKDDPKVTDK---------- 220 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEF 126 KCI C C CP A E Sbjct: 221 --EKCISCMHCVAVCPQKARHCNKVMEL 246 >gi|167562064|ref|ZP_02354980.1| ferredoxin [Burkholderia oklahomensis EO147] Length = 155 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 26/81 (32%), Gaps = 10/81 (12%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 +P E E+ CI C LC CP AI + I Sbjct: 66 PLNPEHGVERPRPVAFIDEQLCIGCTLCMQACPVDAIVGAPKQ----------MHTIVAE 115 Query: 102 KCIYCGLCQEACPVDAIVEGP 122 C C LC CPVD I P Sbjct: 116 LCTGCDLCVPPCPVDCIAMIP 136 >gi|21212953|emb|CAD21593.1| putative ribonuclease L inhibitor [Trypanosoma brucei] Length = 631 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 19/54 (35%) Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C G C +++ I CI CGLC + CP AI Sbjct: 30 CNLECSKCCPVNLQGKLCVVVQKKSTISVISEELCIGCGLCVKKCPYGAIQIIN 83 >gi|332289789|ref|YP_004420641.1| electron transport complex protein RnfB [Gallibacterium anatis UMN179] gi|330432685|gb|AEC17744.1| electron transport complex protein RnfB [Gallibacterium anatis UMN179] Length = 202 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 24/74 (32%), Gaps = 10/74 (13%) Query: 47 FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 F E + EE CI C C CP AI + + + C C Sbjct: 103 FEEEPVPKVAFIHEEMCIGCTKCIQACPVDAIIGANK----------ALHTVIPDLCTGC 152 Query: 107 GLCQEACPVDAIVE 120 LC CP D I Sbjct: 153 ELCVAPCPTDCITM 166 >gi|312795432|ref|YP_004028354.1| NAD-dependent formate dehydrogenase alpha subunit (fdsA) [Burkholderia rhizoxinica HKI 454] gi|312167207|emb|CBW74210.1| NAD-dependent formate dehydrogenase alpha subunit (fdsA) (EC 1.2.1.2) [Burkholderia rhizoxinica HKI 454] Length = 979 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 23/75 (30%), Gaps = 3/75 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T +G + +C+ CG C Sbjct: 181 YFTYDASKCIVCNRCVRACEQTQGTFALTIAGRGFESRVAASEGVSFMASECVSCGACVA 240 Query: 112 ACPVDAIVEGPNFEF 126 ACP + E E Sbjct: 241 ACPTATLHEKSIAEL 255 >gi|307823741|ref|ZP_07653969.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Methylobacter tundripaludum SV96] gi|307735035|gb|EFO05884.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Methylobacter tundripaludum SV96] Length = 1212 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 28/109 (25%), Gaps = 25/109 (22%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQ------------AITIESGPRCHDGTRRT---- 93 AL + C C C +CP A E+ + Sbjct: 687 NLALEIPVWETDLCTQCGKCVMVCPHSVIRSKIYSTEVLAKAPETFKHAPMLGKDFPAGL 746 Query: 94 -VRYDIDMIKCIYCGLCQEACPVD--------AIVEGPNFEFATETRQE 133 + Y + C C LC + CP+ AI P R Sbjct: 747 EITYQVAPEDCTGCTLCVDICPIRDKSNASRKAINMRPQPPLRETERDN 795 >gi|296102656|ref|YP_003612802.1| electron transport complex protein RnfB [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057115|gb|ADF61853.1| electron transport complex protein RnfB [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 192 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 23/76 (30%), Gaps = 10/76 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI + + + C C LC CP I Sbjct: 113 DEANCIGCTKCIQACPVDAIVGAT----------RAMHTVVADLCTGCNLCVAPCPTQCI 162 Query: 119 VEGPNFEFATETRQEL 134 P + +L Sbjct: 163 ELRPVETTTESWKWDL 178 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C C +ACPVDAI Sbjct: 112 IDEANCIGCTKCIQACPVDAI 132 >gi|269962089|ref|ZP_06176443.1| electron transport complex protein RnfB [Vibrio harveyi 1DA3] gi|269833173|gb|EEZ87278.1| electron transport complex protein RnfB [Vibrio harveyi 1DA3] Length = 197 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 28/87 (32%), Gaps = 11/87 (12%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103 S E+ CI C C CP AI + + + +C Sbjct: 95 SAHDLDSKVKTVAFIHEDMCIGCTKCIQACPVDAIVGGTK----------ALHTVIKDEC 144 Query: 104 IYCGLCQEACPVDAIVEGPNFEFATET 130 C LC CP D I P E TE+ Sbjct: 145 TGCDLCVAPCPTDCIEMIPV-ETTTES 170 >gi|261332118|emb|CBH15111.1| ATP-binding cassette sub-family E, putative [Trypanosoma brucei gambiense DAL972] Length = 631 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 19/54 (35%) Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C G C +++ I CI CGLC + CP AI Sbjct: 30 CNLECSKCCPVNLQGKLCVVVQKKSTISVISEELCIGCGLCVKKCPYGAIQIIN 83 >gi|238790209|ref|ZP_04633985.1| Electron transport complex protein rnfC [Yersinia frederiksenii ATCC 33641] gi|238721747|gb|EEQ13411.1| Electron transport complex protein rnfC [Yersinia frederiksenii ATCC 33641] Length = 567 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 3/103 (2%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C LC CPA + + G + ++ CI CG C CP I Sbjct: 351 QACIRCGLCVDACPAS-LLPQQLYWFSRGEEHEKARNHNLFDCIECGACAYVCP-SNIPL 408 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + + L + R R+E++ R + + R Sbjct: 409 VQYYRQEKAEIRALDEESARAAEAKARFEAKQAR-LQREKLAR 450 >gi|298528247|ref|ZP_07015651.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans ASO3-1] gi|298511899|gb|EFI35801.1| NADH dehydrogenase (quinone) [Desulfonatronospira thiodismutans ASO3-1] Length = 774 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 36/112 (32%), Gaps = 20/112 (17%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEH--ALRRYPNGEERCIACKLCEAICPAQAI 78 LRYF +E+ R + + ++ CI C LC C A+ Sbjct: 534 ATTLRYF-------REEYEEHIHDKYCRANVCSGMGVFTIDQKACILCGLCRDACAFDAV 586 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 R Y ID C C C E CPV A+ + A E Sbjct: 587 RE-----------RRSSYFIDQEYCTKCKACFEICPVGAVKVKKKAQIAVEK 627 >gi|91215520|ref|ZP_01252491.1| Pyridine nucleotide-disulphide oxidoreductase domain protein [Psychroflexus torquis ATCC 700755] gi|91186472|gb|EAS72844.1| Pyridine nucleotide-disulphide oxidoreductase domain protein [Psychroflexus torquis ATCC 700755] Length = 528 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 26/83 (31%), Gaps = 15/83 (18%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 +CI+C C C + +I C+ CG+C CP + Sbjct: 449 QCISCGNCTTYCEMGIDVRAYAQKGE---------NIVRSSCVGCGICASVCPRGVLKLE 499 Query: 122 PNFEFATETRQELYYDKERLLNN 144 + T KE LL N Sbjct: 500 ND------TPVGRINSKEILLGN 516 >gi|238796412|ref|ZP_04639921.1| Pyruvate-flavodoxin oxidoreductase [Yersinia mollaretii ATCC 43969] gi|238719857|gb|EEQ11664.1| Pyruvate-flavodoxin oxidoreductase [Yersinia mollaretii ATCC 43969] Length = 1177 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 32/142 (22%), Gaps = 32/142 (22%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A + C C C A C Sbjct: 646 MLAGLGDAL------PVSAFPPDGTWPVGTTQWEKRNIAEDIPIWQPDLCTQCNHCVAAC 699 Query: 74 --------------PAQAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPV-- 115 A A R +Y + C C LC E CP Sbjct: 700 PHSAIRAKVVQPDAMADAPDSLQSLDVKARDMRGQKYVLQVAPEDCTGCNLCYEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETR 131 AI P E E + Sbjct: 760 RQNPEIKAINMKPRLEHLVEEK 781 >gi|332981894|ref|YP_004463335.1| electron transfer flavoprotein subunit alpha [Mahella australiensis 50-1 BON] gi|332699572|gb|AEE96513.1| Electron transfer flavoprotein alpha subunit [Mahella australiensis 50-1 BON] Length = 397 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 40/113 (35%), Gaps = 28/113 (24%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E C C +C CP AI +E+ + + C CG C +AC DAI Sbjct: 8 ENCTGCAVCVRACPFGAIKMENDKA------------VILDNCTLCGSCADACKFDAIDF 55 Query: 121 -----GPNFEFATETRQELYYDKER----------LLNNGDRWESEIVRNIVT 158 + ++ R + +++ LL G ++ +++ Sbjct: 56 QAERGTGMGDLSSY-RDVWVFAEQKDGVIDSAAFELLGVGRHLADQLGQDLAA 107 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 9/27 (33%), Positives = 11/27 (40%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPN 123 I C C +C ACP AI + Sbjct: 4 RIIEENCTGCAVCVRACPFGAIKMEND 30 >gi|310777922|ref|YP_003966255.1| 6-hydroxynicotinate reductase [Ilyobacter polytropus DSM 2926] gi|309747245|gb|ADO81907.1| 6-hydroxynicotinate reductase [Ilyobacter polytropus DSM 2926] Length = 505 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 12/69 (17%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 ++C CK+C CP AI + + C+ CG+C CP Sbjct: 1 MIKIDLKKCKGCKICANNCPISAIDMLDKKA------------LIKDNCVSCGICLRVCP 48 Query: 115 VDAIVEGPN 123 AI + Sbjct: 49 FAAIEKTTE 57 >gi|302387080|ref|YP_003822902.1| Dinitrogenase iron-molybdenum cofactor biosynthesis protein [Clostridium saccharolyticum WM1] gi|302197708|gb|ADL05279.1| Dinitrogenase iron-molybdenum cofactor biosynthesis protein [Clostridium saccharolyticum WM1] Length = 416 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/108 (20%), Positives = 38/108 (35%), Gaps = 22/108 (20%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEER-------CIACKLCEAICPA 75 L K ++ + + ++G ++ G ++ CI C++CE +C Sbjct: 20 ALSEIAKKVIKVDCDVDAPNLYLFYKGTDIEKKNFYGGKKARINRSLCINCEICEEVCKF 79 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 AI ID+ C CG C+ CP +AI Sbjct: 80 GAIKN---------------CTIDLFSCEGCGACKVVCPQNAISLVEE 112 >gi|260773217|ref|ZP_05882133.1| electron transport complex protein RnfB [Vibrio metschnikovii CIP 69.14] gi|260612356|gb|EEX37559.1| electron transport complex protein RnfB [Vibrio metschnikovii CIP 69.14] Length = 195 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 24/79 (30%), Gaps = 10/79 (12%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103 S E+ CI C C CP AI + + + +C Sbjct: 95 SAHDLDNKVKTVAFIHEDMCIGCTKCIQACPVDAIVGGTK----------ALHTVIKDEC 144 Query: 104 IYCGLCQEACPVDAIVEGP 122 C LC CP D I P Sbjct: 145 TGCDLCVAPCPTDCIEMIP 163 >gi|218886951|ref|YP_002436272.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757905|gb|ACL08804.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 1215 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 22/93 (23%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITI------------------ESGPRCHDGTRR 92 A+ E CI C C +CP AI E+ + +G + Sbjct: 676 VAITVPEWLSENCIQCNQCSFVCPHAAIRPILASDEELAGAPASFVAIEAKGKELNGLKY 735 Query: 93 TVRYDIDMIKCIYCGLCQEACPV--DAIVEGPN 123 R + C+ CG C + CP A+V P Sbjct: 736 --RMQVYAQDCMGCGSCADVCPAKNKALVMKPI 766 >gi|210616163|ref|ZP_03290966.1| hypothetical protein CLONEX_03185 [Clostridium nexile DSM 1787] gi|210149925|gb|EEA80934.1| hypothetical protein CLONEX_03185 [Clostridium nexile DSM 1787] Length = 626 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 25/97 (25%), Positives = 35/97 (36%), Gaps = 15/97 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 LRY F+ + + +K L +Y ++C C LC CP AI Sbjct: 543 TLRY-FRDEYIAHIVDKKCPAGVC----KELLQYKIDADKCKGCTLCARTCPNNAIIGSV 597 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + ID +C+ CG C E C AI Sbjct: 598 KE----------VHMIDQSRCVKCGACMEKCRFGAIY 624 >gi|197295563|ref|YP_002154104.1| dihydropyrimidine dehydrogenase [Burkholderia cenocepacia J2315] gi|195945042|emb|CAR57667.1| putative dihydroorotate dehydrogenase family protein [Burkholderia cenocepacia J2315] Length = 438 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 6/63 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117 ++RCI C LC C + ++ DG R +++ C+ C LC CPV Sbjct: 341 DQDRCIQCGLCHIACED--TSHQAITATKDGVR---HFEVVDSACVGCNLCMHVCPVEQC 395 Query: 118 IVE 120 I Sbjct: 396 ITM 398 >gi|169334684|ref|ZP_02861877.1| hypothetical protein ANASTE_01087 [Anaerofustis stercorihominis DSM 17244] gi|169257422|gb|EDS71388.1| hypothetical protein ANASTE_01087 [Anaerofustis stercorihominis DSM 17244] Length = 486 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 26/83 (31%), Gaps = 4/83 (4%) Query: 59 GEERCIACKLCEAICPAQAITIES---GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 +CI C C ++C + I CI CG C CP Sbjct: 139 DLSKCIKCNRCVSMCSDKVGASAISLINRSEETTVATPFNIPIIHSDCIGCGQCITVCPT 198 Query: 116 DA-IVEGPNFEFATETRQELYYD 137 A I G E ++ YY+ Sbjct: 199 GALIERGTTEEIYDLLGEDTYYN 221 >gi|56387327|gb|AAV86076.1| uptake hydrogenase [Clostridium saccharoperbutylacetonicum ATCC 27021] Length = 562 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 3/70 (4%) Query: 59 GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQEACPV 115 + +CI C C +C Q + T +D I C+ CG C CP Sbjct: 143 NKSKCILCGDCVRVCEEVQNVGAIDFVGRGSKMTVTTAFDEPIGHSNCVSCGQCAAVCPT 202 Query: 116 DAIVEGPNFE 125 AIV N E Sbjct: 203 GAIVVRSNTE 212 >gi|71746730|ref|XP_822420.1| ribonuclease L inhibitor [Trypanosoma brucei TREU927] gi|70832088|gb|EAN77592.1| ribonuclease L inhibitor, putative [Trypanosoma brucei] Length = 631 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 19/54 (35%) Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C G C +++ I CI CGLC + CP AI Sbjct: 30 CNLECSKCCPVNLQGKLCVVVQKKSTISVISEELCIGCGLCVKKCPYGAIQIIN 83 >gi|332883529|gb|EGK03812.1| hypothetical protein HMPREF9456_01879 [Dysgonomonas mossii DSM 22836] Length = 430 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 1/73 (1%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 + G L++ CI+C C +CP + + ++ + ++ Sbjct: 335 PVTKGASGILFLKKEEVKRSNCISCGYCVDVCPMRLMPMKFEENY-RKKKYFNLEKYNIS 393 Query: 102 KCIYCGLCQEACP 114 CI C C+ CP Sbjct: 394 SCIECAACEYICP 406 Score = 37.8 bits (86), Expect = 0.52, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 24/56 (42%), Gaps = 4/56 (7%) Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140 + G + ++ CI CG C + CP+ + + R++ Y++ E+ Sbjct: 338 KGASGILFLKKEEVKRSNCISCGYCVDVCPMRLMPMKFEENY----RKKKYFNLEK 389 >gi|313900104|ref|ZP_07833604.1| sulfite reductase, subunit C [Clostridium sp. HGF2] gi|312955156|gb|EFR36824.1| sulfite reductase, subunit C [Clostridium sp. HGF2] Length = 334 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 28/98 (28%), Gaps = 8/98 (8%) Query: 25 RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84 ++ P + G L + + CI C C C + A + S Sbjct: 140 SHYHIKAAVAGCPNDCAKGHFNDFGIIGLTKPTYHSDLCIGCGSCVKACESHATRVLSLK 199 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ CG C CP +A+ P Sbjct: 200 NGKIEKDTC--------CCVGCGECTLVCPTNAMQRSP 229 >gi|294341669|emb|CAZ90088.1| putative 4Fe-4S ferredoxin [Thiomonas sp. 3As] Length = 736 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 24/80 (30%), Gaps = 9/80 (11%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 L RC C C CPA A+ + Sbjct: 587 IPLPHGAGSPLGAIRVDASRCTLCLSCVGACPAGALADNPLAPQLRFIEKN--------- 637 Query: 103 CIYCGLCQEACPVDAIVEGP 122 C+ CGLC + CP DAI P Sbjct: 638 CVQCGLCVKTCPEDAIRLEP 657 Score = 41.6 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 23/69 (33%), Gaps = 16/69 (23%) Query: 66 CKLCEAICPAQAITIESGPRCHD----------------GTRRTVRYDIDMIKCIYCGLC 109 C C IC AQA+ + R + +ID C+ CG C Sbjct: 328 CHACIDICSAQAVHSRARLRPDQTPPIAEADSILPTAAQKKPFVEQIEIDPHLCVGCGAC 387 Query: 110 QEACPVDAI 118 CP A+ Sbjct: 388 TTVCPTGAL 396 Score = 33.9 bits (76), Expect = 8.3, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 14/55 (25%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + C C C A CP AI ++ Y ID+ +C C +AC Sbjct: 201 DLDVCTRCNACLAACPEGAIGLD--------------YQIDLQRCTGHRDCVQAC 241 >gi|268325665|emb|CBH39253.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit A [uncultured archaeon] Length = 729 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 28/90 (31%), Gaps = 17/90 (18%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 EE CI C C +CP A+ ++ ++ C CG C CP Sbjct: 620 QINEEICIGCGTCAEVCPYGALELDE---------VMQVMTVNEAVCKGCGGCNSVCPSG 670 Query: 117 AIVEGPNFEFATETRQELYY-DKERLLNNG 145 A R Y E LL G Sbjct: 671 AATMKHY-------RDRQVYAQIEALLERG 693 Score = 34.3 bits (77), Expect = 6.2, Method: Composition-based stats. Identities = 15/39 (38%), Positives = 19/39 (48%) Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 + IDM KC C C EACPV I + N +T + Sbjct: 261 KRKPRYIDMDKCKDCTPCIEACPVKDIPDEFNEGLSTRS 299 >gi|291288393|ref|YP_003505209.1| NADH:ubiquinone oxidoreductase, subunit G, iron- sulfur binding protein [Denitrovibrio acetiphilus DSM 12809] gi|290885553|gb|ADD69253.1| NADH:ubiquinone oxidoreductase, subunit G, iron- sulfur binding protein [Denitrovibrio acetiphilus DSM 12809] Length = 748 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 28/90 (31%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 E+ S+ + C+ C+ C C Sbjct: 120 EEQVSSDKPAEPIEYWNKIVYNSNLCVLCEKCIKSCHEMTGCSALKMEDRGFYNHVTPSK 179 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 D +KC +CG C + CPV A+++ A Sbjct: 180 GDTLKCDFCGTCIDRCPVGALLDSQFHHSA 209 >gi|261341169|ref|ZP_05969027.1| putative pyruvate formate-lyase 1 activating enzyme [Enterobacter cancerogenus ATCC 35316] gi|288316464|gb|EFC55402.1| putative pyruvate formate-lyase 1 activating enzyme [Enterobacter cancerogenus ATCC 35316] Length = 319 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 10/71 (14%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G H R ERC+ C C +CP + + G + R C CGL Sbjct: 54 GLHPGREIFFHAERCLHCGQCAQLCPTGLHSWQDGLHSLNRDR----------SCTGCGL 103 Query: 109 CQEACPVDAIV 119 C+E CP A+ Sbjct: 104 CEERCPAAALN 114 Score = 33.9 bits (76), Expect = 7.2, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 19/61 (31%), Gaps = 8/61 (13%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 G + K C+ C A +G +C++CG C + CP Sbjct: 28 HDGPGIRSIVFFKGCQMRCAWCAN--------PEGLHPGREIFFHAERCLHCGQCAQLCP 79 Query: 115 V 115 Sbjct: 80 T 80 >gi|225028858|ref|ZP_03718050.1| hypothetical protein EUBHAL_03145 [Eubacterium hallii DSM 3353] gi|224953813|gb|EEG35022.1| hypothetical protein EUBHAL_03145 [Eubacterium hallii DSM 3353] Length = 448 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 14/78 (17%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C C A+C + + + +CI CG C CP AI P Sbjct: 27 CSECGHCFAVC----------EEEIGVAAKYLLNQREAYQCIGCGQCSAVCPEKAITGRP 76 Query: 123 NFEFATETRQELYYDKER 140 +++ +EL D E+ Sbjct: 77 HYKIV----KELIQDPEK 90 >gi|254486059|ref|ZP_05099264.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Roseobacter sp. GAI101] gi|214042928|gb|EEB83566.1| benzoyl-CoA oxygenase/reductase, BoxA protein [Roseobacter sp. GAI101] Length = 390 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 11/62 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C CE CP AI + ++ C +C C CP +I Sbjct: 11 DPEICIRCYTCEMTCPVGAIEHDDNNVV-----------VNFDTCNFCMDCIPVCPTGSI 59 Query: 119 VE 120 E Sbjct: 60 DE 61 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 12/26 (46%), Positives = 13/26 (50%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPN 123 ID CI C C+ CPV AI N Sbjct: 10 IDPEICIRCYTCEMTCPVGAIEHDDN 35 >gi|158320980|ref|YP_001513487.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [Alkaliphilus oremlandii OhILAs] gi|158141179|gb|ABW19491.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Alkaliphilus oremlandii OhILAs] Length = 1176 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 31/103 (30%), Gaps = 19/103 (18%) Query: 28 FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ----------- 76 FK YP G+T+ RG + E+CI C C +CP Sbjct: 657 FKGMEDGTYPL--GTTAYEKRGIAVMIPQWQ-IEKCIQCNQCSYVCPHAVIRPFLLDEKE 713 Query: 77 -----AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 A R + + C CG C + CP Sbjct: 714 MKQKPADFETKDAMGKGVEHLQYRIQVSPLDCTGCGNCADICP 756 >gi|322804288|emb|CBZ01838.1| iron-sulfur cluster-binding protein [Clostridium botulinum H04402 065] Length = 387 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 5/58 (8%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+CI C C +CP + I+ + +M KCI C CQE CP AI Sbjct: 319 EKCIGCNRCAEVCPEKPYVIDMIKKGDKKIPVW-----NMKKCIRCFCCQELCPKGAI 371 >gi|217967483|ref|YP_002352989.1| electron transport complex, RnfABCDGE type, B subunit [Dictyoglomus turgidum DSM 6724] gi|217336582|gb|ACK42375.1| electron transport complex, RnfABCDGE type, B subunit [Dictyoglomus turgidum DSM 6724] Length = 266 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 11/62 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI C +CE +CP AI ++ ID C CG+C E CP A+ Sbjct: 213 CSKACIGCGICEKVCPKGAIKMDG-----------RFPVIDYNLCDGCGICVEKCPTKAL 261 Query: 119 VE 120 + Sbjct: 262 IL 263 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 27/77 (35%), Gaps = 5/77 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-----DIDMIKCIYCGLCQEAC 113 E+C C LC CP +T+ +T + CI CG+C++ C Sbjct: 168 DMEKCTGCGLCVKACPRGILTLLPVDIPLLLGCKTELPGPEARRVCSKACIGCGICEKVC 227 Query: 114 PVDAIVEGPNFEFATET 130 P AI F Sbjct: 228 PKGAIKMDGRFPVIDYN 244 Score = 42.0 bits (97), Expect = 0.029, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 22/59 (37%), Gaps = 10/59 (16%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 Y C+ C CP AI + IDM KC CGLC +ACP Sbjct: 135 YKGCPTGCLGFGDCVKACPFDAIHMGEDGLPK----------IDMEKCTGCGLCVKACP 183 >gi|168207991|ref|ZP_02633996.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium perfringens E str. JGS1987] gi|170660717|gb|EDT13400.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium perfringens E str. JGS1987] Length = 273 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 26/70 (37%), Positives = 30/70 (42%), Gaps = 11/70 (15%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 N CI CKLCE CP++AI IE+ ID KC CG+C C Sbjct: 210 IVNQNCSVGCIGCKLCEKNCPSEAIRIENNLAI-----------IDYEKCTSCGICVSKC 258 Query: 114 PVDAIVEGPN 123 P AI N Sbjct: 259 PKKAINLREN 268 Score = 37.0 bits (84), Expect = 0.78, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 5/78 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCIYCGLCQEAC 113 +C+ACK C + CP I I + + + + CI C LC++ C Sbjct: 170 DSSKCVACKACVSACPQNLIAIIKENQKVIVSCNSNDSGKIVNQNCSVGCIGCKLCEKNC 229 Query: 114 PVDAIVEGPNFEFATETR 131 P +AI N + Sbjct: 230 PSEAIRIENNLAIIDYEK 247 >gi|254228961|ref|ZP_04922383.1| formate dehydrogenase, alpha subunit, putative [Vibrio sp. Ex25] gi|151938638|gb|EDN57474.1| formate dehydrogenase, alpha subunit, putative [Vibrio sp. Ex25] Length = 1422 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 28/84 (33%), Gaps = 19/84 (22%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM------------------ 100 RCI+C C C QA+ R +R D Sbjct: 636 DANRCISCGQCIQACREQAVHGVLSFVSDKNGRPALRPDDRPRFRSDEKGASCSGLTLMG 695 Query: 101 -IKCIYCGLCQEACPVDAIVEGPN 123 C+ CG C +ACP A+V+ + Sbjct: 696 NSNCVQCGACVQACPTGAMVDSRD 719 Score = 33.5 bits (75), Expect = 8.7, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 21/72 (29%), Gaps = 4/72 (5%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P ++ +G G C+ C C CP A+ + Sbjct: 673 PDDRPRFRSDEKGASCSGLTLMGNSNCVQCGACVQACPTGAMVDSRDRSQGRTEQLKAVD 732 Query: 97 DIDMIKCIYCGL 108 I C YCG+ Sbjct: 733 TI----CTYCGV 740 >gi|305662559|ref|YP_003858847.1| ABC transporter related [Ignisphaera aggregans DSM 17230] gi|304377128|gb|ADM26967.1| ABC transporter related [Ignisphaera aggregans DSM 17230] Length = 608 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 27/84 (32%), Gaps = 5/84 (5%) Query: 50 EHALRRYPNGEERCIA--CK-LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 +R E C C C CP + + + + I KCI C Sbjct: 2 YKMVRVAVIDYELCHPDKCGIPCIRFCPIN--KTKPYKAIEISSEKKGKPIIYEDKCIAC 59 Query: 107 GLCQEACPVDAIVEGPNFEFATET 130 G+C + CP AI E E Sbjct: 60 GICIKKCPFKAIRIVNLPEEIEEN 83 >gi|288560653|ref|YP_003424139.1| energy-converting hydrogenase A subunit P EhaP [Methanobrevibacter ruminantium M1] gi|288543363|gb|ADC47247.1| energy-converting hydrogenase A subunit P EhaP [Methanobrevibacter ruminantium M1] Length = 344 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 29/118 (24%), Positives = 39/118 (33%), Gaps = 22/118 (18%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E F + R+Y + CI C C C AI R + Sbjct: 108 ENHFIREEFNIIPSKRKYIVDDYLCIRCHKCMDACEVGAIEEFDD-----------RVSV 156 Query: 99 DMIKCIYCGLCQEACPVDAIVEG----------PNFEFATETRQELYYDK-ERLLNNG 145 + KCI CG C EACPV + G A T ++ K + L+ G Sbjct: 157 NQSKCISCGKCLEACPVKGAMRGVFVNNLEEQKKIINLAVTTLEDYIESKQDDLIQLG 214 Score = 41.6 bits (96), Expect = 0.038, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 32/105 (30%), Gaps = 11/105 (10%) Query: 10 FLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69 ++ EF + + + RFR +E CI C C Sbjct: 5 IWYIYEFAR------KTWIDGFFDAKSKEDIAHKPDRFRDFP-----NVIKENCIGCGSC 53 Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 A CP+ + + I+ CI CG C E CP Sbjct: 54 TASCPSPNAIKLIRDSDTEDAFGLIYPVINKASCIRCGFCAEVCP 98 Score = 40.9 bits (94), Expect = 0.061, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 5/75 (6%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV-----RYDIDMIKCIY 105 L + CI C C +CP+ T+E G + +Y +D CI Sbjct: 75 FGLIYPVINKASCIRCGFCAEVCPSTPKTLECGENHFIREEFNIIPSKRKYIVDDYLCIR 134 Query: 106 CGLCQEACPVDAIVE 120 C C +AC V AI E Sbjct: 135 CHKCMDACEVGAIEE 149 Score = 38.5 bits (88), Expect = 0.29, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 29/96 (30%), Gaps = 10/96 (10%) Query: 24 LRYFFKAKTTI-NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 + F I N +R E C C++C CP AI+ + Sbjct: 225 FKPIFDKSLNILNDKEVVHEVLEDAINRLKIRIITWDSENCKKCQMCIPDCPTGAISFDY 284 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + KC+ C +C + CP I Sbjct: 285 DKDTIVRDK---------EKCLRCSICYQTCPFGVI 311 >gi|227486762|ref|ZP_03917078.1| ferredoxin [Anaerococcus lactolyticus ATCC 51172] gi|227235232|gb|EEI85247.1| ferredoxin [Anaerococcus lactolyticus ATCC 51172] Length = 57 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 11/65 (16%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 Y E CI+C CE CP AI+ Y+ID CI CG C C Sbjct: 1 MAYKIDENTCISCGSCEGECPVGAISQGDAA-----------YEIDANACIDCGSCSAVC 49 Query: 114 PVDAI 118 PV+AI Sbjct: 50 PVEAI 54 Score = 34.3 bits (77), Expect = 5.5, Method: Composition-based stats. Identities = 14/27 (51%), Positives = 16/27 (59%) Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGP 122 Y ID CI CG C+ CPV AI +G Sbjct: 3 YKIDENTCISCGSCEGECPVGAISQGD 29 >gi|268589520|ref|ZP_06123741.1| electron transport complex, RnfABCDGE type, B subunit [Providencia rettgeri DSM 1131] gi|291315189|gb|EFE55642.1| electron transport complex, RnfABCDGE type, B subunit [Providencia rettgeri DSM 1131] Length = 204 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 22/64 (34%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 EE CI C C CP AI + + + C C LC CP D I Sbjct: 113 DEENCIGCTKCIQACPVDAIVGAT----------RAMHTVIEDLCTGCDLCVAPCPTDCI 162 Query: 119 VEGP 122 P Sbjct: 163 ELVP 166 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C C +ACPVDAI Sbjct: 112 IDEENCIGCTKCIQACPVDAI 132 >gi|218190496|gb|EEC72923.1| hypothetical protein OsI_06764 [Oryza sativa Indica Group] Length = 669 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 23/54 (42%) Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C + +G +C + T + I CI CG+C + CP DAI Sbjct: 24 CGQQCRKRCPVNATGRQCIEVTPSSRVSLISEELCIGCGICVKVCPFDAIQIIN 77 >gi|315230439|ref|YP_004070875.1| RNase L inhibitor [Thermococcus barophilus MP] gi|315183467|gb|ADT83652.1| RNase L inhibitor [Thermococcus barophilus MP] Length = 590 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 24/78 (30%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 +R ++C K +C G + I C CG+C Sbjct: 1 MRVAVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYKPIIQEASCTGCGICVHK 60 Query: 113 CPVDAIVEGPNFEFATET 130 CP +AI E +E Sbjct: 61 CPFNAITIVNLPEQLSED 78 >gi|183231916|ref|XP_652137.2| hypothetical protein [Entamoeba histolytica HM-1:IMSS] gi|169802287|gb|EAL46751.2| hypothetical protein EHI_134850 [Entamoeba histolytica HM-1:IMSS] Length = 469 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 29/103 (28%), Gaps = 10/103 (9%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI----------ESGPRCHDG 89 S G+ +C+ C +C C + + Sbjct: 2 PPKPSHTITGQDHNNAIEIDWSKCMGCGMCAMRCNYGVLHKSGPRIPPTVTPNRENVTQP 61 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 R ID C+ CG C AC AI + E E ++ Sbjct: 62 NDDKTRVLIDESDCVGCGQCSSACNFGAIKPVSHIERVFEAKK 104 >gi|28212066|ref|NP_783010.1| anaerobic sulfite reductase subunit C [Clostridium tetani E88] gi|28204509|gb|AAO36947.1| anaerobic sulfite reductase subunit C [Clostridium tetani E88] Length = 316 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 25/88 (28%), Gaps = 8/88 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + + G + RCI C+ C +C + + Sbjct: 145 CPNDCIKARMQDFGIIGMTEPQYDAYRCIGCQACVNVC--------KKKSTGALSFENYK 196 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPN 123 D KCI CG C CP A Sbjct: 197 VVRDHSKCIGCGECINKCPTSAWSRSEE 224 >gi|18977217|ref|NP_578574.1| 2-keto acid:ferredoxin oxidoreductase subunit alpha [Pyrococcus furiosus DSM 3638] gi|18892876|gb|AAL80969.1| 2-keto acid:ferredoxin oxidoreductase subunit alpha [Pyrococcus furiosus DSM 3638] Length = 627 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 9/76 (11%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 P R E+RC CK C + A+ E + + ID + C Sbjct: 557 PVIRRGEIGEIPVVVEDRCTGCKACILLTGCPALVYEPEKK---------KVRIDPLICT 607 Query: 105 YCGLCQEACPVDAIVE 120 CG+C + CP DAI Sbjct: 608 GCGVCNQLCPFDAIKF 623 >gi|14590719|ref|NP_142789.1| putative ATPase RIL [Pyrococcus horikoshii OT3] gi|3257270|dbj|BAA29953.1| 590aa long hypothetical transport protein [Pyrococcus horikoshii OT3] Length = 590 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 21/73 (28%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 +R ++C K +C G R I C CG+C Sbjct: 1 MRIAVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENNRPIIQEASCTGCGICVHK 60 Query: 113 CPVDAIVEGPNFE 125 CP AI E Sbjct: 61 CPFKAISIVNLPE 73 >gi|323485112|ref|ZP_08090465.1| hydrogenase [Clostridium symbiosum WAL-14163] gi|323693507|ref|ZP_08107713.1| hydrogenase [Clostridium symbiosum WAL-14673] gi|323401668|gb|EGA94013.1| hydrogenase [Clostridium symbiosum WAL-14163] gi|323502429|gb|EGB18285.1| hydrogenase [Clostridium symbiosum WAL-14673] Length = 682 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 27/98 (27%), Gaps = 20/98 (20%) Query: 27 FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC 86 + P EK + S E CI C C +C Sbjct: 1 MNHLPMNVRVPIEKDNPS-----------ICRDEALCIKCGQCRDVCTD---------YI 40 Query: 87 HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 T+ CI CG C CPV +I E + Sbjct: 41 GVHGTYTLEQTGGTAVCINCGQCANVCPVSSITEKYEY 78 >gi|300857164|ref|YP_003782148.1| putative electron transfer flavoprotein subunit alpha [Clostridium ljungdahlii DSM 13528] gi|300437279|gb|ADK17046.1| predicted electron transfer flavoprotein alpha subunit [Clostridium ljungdahlii DSM 13528] Length = 429 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 10/61 (16%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C+ C ICP A+ I + KC CG C CPV A+ Sbjct: 7 DSCIGCESCIPICPFDALGINGEGKLVASK----------EKCTECGKCVSVCPVSALNI 56 Query: 121 G 121 Sbjct: 57 S 57 >gi|300856192|ref|YP_003781176.1| putative oxidoreductase [Clostridium ljungdahlii DSM 13528] gi|300436307|gb|ADK16074.1| putative oxidoreductase with a 2Fe-2S iron-sulfur cluster domain [Clostridium ljungdahlii DSM 13528] Length = 710 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 4/81 (4%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK---CIYCGLCQEACP 114 + RC+ C C C D ++K C +CG C E CP Sbjct: 141 HDMNRCVLCGRCVRACNDLRGVKVLQYNKKDMETYVGTLQDKLLKDSDCCFCGACAEVCP 200 Query: 115 VDAIVEGPNFEFATETRQELY 135 I + N+ E R L Sbjct: 201 TGTIRDMLNYSP-IEKRDTLI 220 >gi|316931523|ref|YP_004106505.1| hydrogenase, Fe-only [Rhodopseudomonas palustris DX-1] gi|315599237|gb|ADU41772.1| hydrogenase, Fe-only [Rhodopseudomonas palustris DX-1] Length = 619 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 37/118 (31%), Gaps = 14/118 (11%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 L++ L FF + T + P ++ S S RC+ C+ C AI Sbjct: 131 LQDLAQFVGLQQNRFFDRERTESRPVDQSSPS-----------MVRDMRRCVRCQRCVAI 179 Query: 73 CPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 C R D C+ CG C CP A+ E E A Sbjct: 180 CRYHQKIDALAIEGSGMERVVALRDADGYPNSVCVSCGQCVLVCPTGALGERDETERA 237 >gi|261211645|ref|ZP_05925932.1| iron-sulfur cluster-binding protein [Vibrio sp. RC341] gi|260838995|gb|EEX65627.1| iron-sulfur cluster-binding protein [Vibrio sp. RC341] Length = 504 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 9/75 (12%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C A+CP +A+ C+ CGLC +ACP + Sbjct: 369 SDCTLCMSCVAVCPTRALHPAGDSPA---------LRFIEQDCVQCGLCVKACPEQVLSA 419 Query: 121 GPNFEFATETRQELY 135 P + RQ + Sbjct: 420 TPQLNWNKAARQGVV 434 Score = 40.9 bits (94), Expect = 0.055, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 12/80 (15%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 C+ C CPA A++ E + R I+ C G C ACP +AI Sbjct: 137 CERCVDACPAGALSSEGSEQTGH------RIQINPYLCQGVGTCATACPTEAIH------ 184 Query: 126 FATETRQELYYDKERLLNNG 145 +A + ERLL N Sbjct: 185 YALPNPTDTQKFIERLLANY 204 Score = 33.5 bits (75), Expect = 9.9, Method: Composition-based stats. Identities = 6/23 (26%), Positives = 8/23 (34%) Query: 97 DIDMIKCIYCGLCQEACPVDAIV 119 + C C C CP A+ Sbjct: 365 ECQASDCTLCMSCVAVCPTRALH 387 >gi|260779356|ref|ZP_05888248.1| electron transport complex protein RnfB [Vibrio coralliilyticus ATCC BAA-450] gi|260605520|gb|EEX31815.1| electron transport complex protein RnfB [Vibrio coralliilyticus ATCC BAA-450] Length = 194 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 26/79 (32%), Gaps = 10/79 (12%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103 S ++ E+ CI C C CP AI + + + +C Sbjct: 95 SAHDLDDNVKTVAFIHEDMCIGCTKCIQACPVDAIVGGTK----------ALHTVIKDEC 144 Query: 104 IYCGLCQEACPVDAIVEGP 122 C LC CP D I P Sbjct: 145 TGCDLCVAPCPTDCIEMIP 163 >gi|238758664|ref|ZP_04619839.1| Pyruvate-flavodoxin oxidoreductase [Yersinia aldovae ATCC 35236] gi|238703175|gb|EEP95717.1| Pyruvate-flavodoxin oxidoreductase [Yersinia aldovae ATCC 35236] Length = 1177 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 25/144 (17%), Positives = 35/144 (24%), Gaps = 37/144 (25%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A + C C C A C Sbjct: 646 MLAGLGDAL------PVSAFPPDGTWPVGTTQWEKRNIAEDIPIWQPDLCTQCNHCVAAC 699 Query: 74 PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 P A +++ R G + + C C LC E CP Sbjct: 700 PHSAIRAKVVQPAAMSGAPDSLQSLDVKARDMRGQKY--VLQVAPEDCTGCNLCYEVCPA 757 Query: 116 --------DAIVEGPNFE-FATET 130 AI P E A E Sbjct: 758 KDRQNPEIKAINMKPRLEHLAAEK 781 >gi|210617173|ref|ZP_03291440.1| hypothetical protein CLONEX_03662 [Clostridium nexile DSM 1787] gi|210149448|gb|EEA80457.1| hypothetical protein CLONEX_03662 [Clostridium nexile DSM 1787] Length = 1178 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 21/89 (23%), Gaps = 18/89 (20%) Query: 58 NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRYDIDMIKC 103 E CI C C +CP A + C Sbjct: 688 WQPENCIQCNRCAYVCPHAVIRPVALTEEEVANAPEGLETIDMVGMPGLKFTMTVSAYDC 747 Query: 104 IYCGLCQEACP----VDAIVEGPNFEFAT 128 CG C CP A+V E A Sbjct: 748 TGCGSCANVCPGKKGEKALVMKNMEENAG 776 >gi|167757175|ref|ZP_02429302.1| hypothetical protein CLORAM_02725 [Clostridium ramosum DSM 1402] gi|167703350|gb|EDS17929.1| hypothetical protein CLORAM_02725 [Clostridium ramosum DSM 1402] Length = 202 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 12/58 (20%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RCIAC C+ CP Q I + +Y I C++CGLC E CPV AI Sbjct: 153 NRCIACDRCKRECPQQCI------------KSGSKYKIMQDHCLHCGLCYENCPVRAI 198 >gi|71908453|ref|YP_286040.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Dechloromonas aromatica RCB] gi|71848074|gb|AAZ47570.1| Pyruvate:ferredoxin (flavodoxin) oxidoreductase [Dechloromonas aromatica RCB] Length = 1212 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 22/82 (26%), Gaps = 17/82 (20%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQA-----------------ITIESGPRCHDGTRR 92 AL+ + C C C +CP A + Sbjct: 687 NLALQIPVLETDLCTQCGKCVFVCPHAAIRVKAYPAELAAEAPASFKQMAIRSKDYPAGL 746 Query: 93 TVRYDIDMIKCIYCGLCQEACP 114 + Y + C C LC + CP Sbjct: 747 KMTYQVAPEDCTGCTLCVDVCP 768 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 8/18 (44%), Positives = 8/18 (44%) Query: 101 IKCIYCGLCQEACPVDAI 118 C CG C CP AI Sbjct: 698 DLCTQCGKCVFVCPHAAI 715 >gi|20091691|ref|NP_617766.1| polyferredoxin [Methanosarcina acetivorans C2A] gi|19916865|gb|AAM06246.1| polyferredoxin [Methanosarcina acetivorans C2A] Length = 489 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 6/77 (7%) Query: 59 GEERCIACKLCEAICPAQAITIES--GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 ++C C++C +CP AIT ES + + + KC+ C LC+ ACP D Sbjct: 129 DLDKCTFCRMCSNLCPVHAITFESVGEVPDEEQYPKYDAFVNINEKCLPCALCEGACPQD 188 Query: 117 AIVEGPNFEFATETRQE 133 AI EF ++E Sbjct: 189 AI----EVEFTFPKKEE 201 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 4/87 (4%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E+ T L + +C C LC+ +CP +AI G R + + + + Sbjct: 237 EREPTPDNPVPFEQLLVDED---KCDYCVLCQDLCPEEAIK-VKGERPCEAPKVEGKVTV 292 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFE 125 D +KC C CQ CP +A+ E Sbjct: 293 DDMKCTQCARCQAVCPYEAVDLQKPME 319 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 1/77 (1%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L+ +RC C +C ICP +A+ + G +D+ KC +C +C Sbjct: 84 LKTLDYDYKRCNGCGICVDICPTKALELGPMHEIATGLDAPPVM-MDLDKCTFCRMCSNL 142 Query: 113 CPVDAIVEGPNFEFATE 129 CPV AI E E Sbjct: 143 CPVHAITFESVGEVPDE 159 Score = 40.9 bits (94), Expect = 0.054, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 2/60 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+C C +C C A + D + +D KC YC LCQ+ CP +AI Sbjct: 216 DPEKCNFCGICARFC--DAFILLEREPTPDNPVPFEQLLVDEDKCDYCVLCQDLCPEEAI 273 Score = 38.5 bits (88), Expect = 0.30, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 32/83 (38%), Gaps = 6/83 (7%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P+E G+ +L E C+ C +CP++ + + P Sbjct: 307 CPYEAVDLQKPMEGKLSLIELNLKECDPQGCRGCFNVCPSELWYVPTDPEDPRKIAFAED 366 Query: 96 YDIDMIKCIYCGLCQEACPVDAI 118 + C+YCG C +AC + AI Sbjct: 367 F------CMYCGACVKACHLGAI 383 Score = 37.8 bits (86), Expect = 0.48, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 30/81 (37%), Gaps = 5/81 (6%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE-----SGPRCHDGTRR 92 FE P + N E+C+ C LCE CP AI +E Sbjct: 150 FESVGEVPDEEQYPKYDAFVNINEKCLPCALCEGACPQDAIEVEFTFPKKEEIAPFKEGA 209 Query: 93 TVRYDIDMIKCIYCGLCQEAC 113 +ID KC +CG+C C Sbjct: 210 GGEIEIDPEKCNFCGICARFC 230 >gi|260061673|ref|YP_003194753.1| pyridine nucleotide-disulfide oxidoreductase domain-containing protein [Robiginitalea biformata HTCC2501] gi|88785805|gb|EAR16974.1| Pyridine nucleotide-disulphide oxidoreductase domain protein [Robiginitalea biformata HTCC2501] Length = 520 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 34/99 (34%), Gaps = 20/99 (20%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R R NG +CI+C C A C + +I C+ CG Sbjct: 429 RLFSRFRITTNG-GQCISCGNCSAYCEMGIDVRAYAQKGE---------NIVRASCVGCG 478 Query: 108 LCQEACP--VDAIVEGPNFEFATETRQELYYDKERLLNN 144 +C CP V + GP R+ +E LL N Sbjct: 479 ICSAVCPRGVLKLENGP--------REGRINSREVLLGN 509 >gi|309775906|ref|ZP_07670899.1| sulfite reductase, subunit C [Erysipelotrichaceae bacterium 3_1_53] gi|308916328|gb|EFP62075.1| sulfite reductase, subunit C [Erysipelotrichaceae bacterium 3_1_53] Length = 334 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 24/74 (32%), Gaps = 8/74 (10%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G L + + CI C C C + A + S C+ CG Sbjct: 164 GIIGLTKPTYHSDLCIGCGSCVKACESHATRVLSLKNGKIEKDTC--------CCVGCGE 215 Query: 109 CQEACPVDAIVEGP 122 C CP +A+ P Sbjct: 216 CTLVCPTNAMQRSP 229 >gi|303326306|ref|ZP_07356749.1| heterodisulfide reductase, A subunit [Desulfovibrio sp. 3_1_syn3] gi|302864222|gb|EFL87153.1| heterodisulfide reductase, A subunit [Desulfovibrio sp. 3_1_syn3] Length = 653 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 21/64 (32%), Gaps = 7/64 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RC+ C C CP AI R + + C CGLC CP AI Sbjct: 581 DIRRCVDCGKCIRCCPFGAIK-------EVEIRGEQKAQVIETVCQGCGLCTATCPQGAI 633 Query: 119 VEGP 122 Sbjct: 634 QLSH 637 Score = 41.6 bits (96), Expect = 0.031, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 27/86 (31%), Gaps = 13/86 (15%) Query: 57 PNGEERCIACKLCEAICPA----QAITIESGPR----CHDGTRRTVRYDIDMIKCI---- 104 +C C C CP+ A +GP + I+ C Sbjct: 236 YVDWSKCTGCGACTEKCPSKKTPDAFNEFTGPTTAITIAFPQAIPKKAVINAAHCRQFVK 295 Query: 105 -YCGLCQEACPVDAIVEGPNFEFATE 129 CG+C + CP AI E TE Sbjct: 296 GKCGVCAKVCPTGAIQYDMQDEIVTE 321 Score = 33.5 bits (75), Expect = 9.5, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 3/39 (7%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 +D+ +C+ CG C CP AI E E + ++ Sbjct: 579 QVDIRRCVDCGKCIRCCPFGAI---KEVEIRGEQKAQVI 614 >gi|296273669|ref|YP_003656300.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Arcobacter nitrofigilis DSM 7299] gi|296097843|gb|ADG93793.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Arcobacter nitrofigilis DSM 7299] Length = 104 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 3/70 (4%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 +RC AC LC ++CPA + + G++ + I CI CG C+ ACP Sbjct: 13 WIDAKRCKACDLCASVCPAGVLAMTYDSTSTLGSKVRI---ISKESCIGCGDCEYACPDF 69 Query: 117 AIVEGPNFEF 126 AI E+ Sbjct: 70 AISVATKHEY 79 >gi|296109703|ref|YP_003616652.1| CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit [Methanocaldococcus infernus ME] gi|295434517|gb|ADG13688.1| CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit [Methanocaldococcus infernus ME] Length = 758 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 27/94 (28%), Gaps = 7/94 (7%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 +K R + L + C C C +CP A+ Sbjct: 374 EQKKRIGLDLRDKQVL----ESIKECTECGWCNRVCP--AMLPIKEAMIEAKKGNLEPLS 427 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 KC+ CG C E C I + A + R Sbjct: 428 NIYEKCVGCGKCVEFC-ERNIKLVDLYRVAAKER 460 >gi|261419625|ref|YP_003253307.1| dihydropyrimidine dehydrogenase [Geobacillus sp. Y412MC61] gi|319766442|ref|YP_004131943.1| dihydroorotate dehydrogenase [Geobacillus sp. Y412MC52] gi|261376082|gb|ACX78825.1| dihydroorotate dehydrogenase family protein [Geobacillus sp. Y412MC61] gi|317111308|gb|ADU93800.1| dihydroorotate dehydrogenase family protein [Geobacillus sp. Y412MC52] Length = 429 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 21/63 (33%), Gaps = 4/63 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117 ERCI C C C + +G C+ C LC CPVD A Sbjct: 338 HRERCIQCNKCYISCEDASHQCIERLVDENGKEYLKV---REEDCVGCNLCSIVCPVDGA 394 Query: 118 IVE 120 I Sbjct: 395 IEM 397 >gi|169831496|ref|YP_001717478.1| hydrogenase, Fe-only [Candidatus Desulforudis audaxviator MP104C] gi|169638340|gb|ACA59846.1| hydrogenase, Fe-only [Candidatus Desulforudis audaxviator MP104C] Length = 590 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 3/68 (4%) Query: 59 GEERCIACKLCEAIC-PAQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115 ++CI C+ C +C Q + T Y++ + C++CG C CPV Sbjct: 145 EPQKCIYCRRCVTVCAEVQTVHAIGPQLRGFATVIAPPYNLPLGDSVCVHCGQCALVCPV 204 Query: 116 DAIVEGPN 123 AI E + Sbjct: 205 GAIYERDD 212 >gi|222053362|ref|YP_002535724.1| Electron transfer flavoprotein alpha subunit [Geobacter sp. FRC-32] gi|221562651|gb|ACM18623.1| Electron transfer flavoprotein alpha subunit [Geobacter sp. FRC-32] Length = 449 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 23/87 (26%) Query: 62 RCIACK-LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 +CIAC CE+ CP +I + G + KCI C C + CP A+ Sbjct: 21 KCIACGARCESSCPVNSIEMSDGGEPA----------VLAEKCIGCEKCIKVCPASALEM 70 Query: 121 GPNFEFATETRQELYYDKERLLNNGDR 147 + ++L LL D+ Sbjct: 71 -------FYSPEDL-----ELLKQWDK 85 >gi|56419957|ref|YP_147275.1| dihydropyrimidine dehydrogenase [Geobacillus kaustophilus HTA426] gi|56379799|dbj|BAD75707.1| dihydropyrimidine dehydrogenase [Geobacillus kaustophilus HTA426] Length = 429 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 21/63 (33%), Gaps = 4/63 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117 ERCI C C C + +G C+ C LC CPVD A Sbjct: 338 HRERCIQCNKCYISCEDASHQCIERLVDENGKEYLKV---REEDCVGCNLCSIVCPVDGA 394 Query: 118 IVE 120 I Sbjct: 395 IEM 397 >gi|88799395|ref|ZP_01114973.1| dihydropyrimidine dehydrogenase [Reinekea sp. MED297] gi|88777934|gb|EAR09131.1| dihydropyrimidine dehydrogenase [Reinekea sp. MED297] Length = 424 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 4/76 (5%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + +++CI C C C + DGT R +DI +C+ Sbjct: 328 KYLNMNYKVVADIDQDKCIGCGRCYIGCEDTSHQAIELTPQADGTNR---FDIIEEECVG 384 Query: 106 CGLCQEACPV-DAIVE 120 C LCQ CPV D I Sbjct: 385 CNLCQITCPVEDCITM 400 >gi|327310272|ref|YP_004337169.1| putative ATPase RIL [Thermoproteus uzoniensis 768-20] gi|326946751|gb|AEA11857.1| putative ATPase RIL [Thermoproteus uzoniensis 768-20] Length = 588 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 24/73 (32%), Gaps = 2/73 (2%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 +R + C K C C +SG T + I CI CG+C Sbjct: 1 MRIAVVDRDSCDP-KKCGHECIKYCPVNKSGKVI-WIDENTGKAVISEKLCIGCGICVHK 58 Query: 113 CPVDAIVEGPNFE 125 CP AI E Sbjct: 59 CPFSAITITNLPE 71 >gi|308512759|gb|ADO33033.1| pixie [Biston betularia] Length = 608 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 3/68 (4%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP---N 123 K C C + G C + T I CI CG+C + CP +AI N Sbjct: 27 KRCRQECKKSCPVVRMGKLCIEVTPNDKIATISEELCIGCGICVKKCPFEAITIINIPSN 86 Query: 124 FEFATETR 131 E T R Sbjct: 87 LEKHTTHR 94 >gi|284167378|ref|YP_003405656.1| formate dehydrogenase subunit alpha [Haloterrigena turkmenica DSM 5511] gi|284017033|gb|ADB62983.1| formate dehydrogenase, alpha subunit [Haloterrigena turkmenica DSM 5511] Length = 1110 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 4/68 (5%) Query: 57 PNGEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 +CI C C C + IE ++ + +C+ CG C Sbjct: 207 QIDRNKCILCNRCVEGCNDVQVEGVLRIEGHGEDTRIGFQSDAETMADSECVSCGHCATV 266 Query: 113 CPVDAIVE 120 CP A+ E Sbjct: 267 CPTGALTE 274 >gi|283853304|ref|ZP_06370553.1| hydrogenase, Fe-only [Desulfovibrio sp. FW1012B] gi|283571285|gb|EFC19296.1| hydrogenase, Fe-only [Desulfovibrio sp. FW1012B] Length = 421 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 30/79 (37%), Gaps = 9/79 (11%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L E +CI C C + CP AI E G + CI+CG C Sbjct: 25 LFFVQVDESKCIGCDACLSYCPTGAIVGEMGEPHKI---------VAPEACIHCGQCLTH 75 Query: 113 CPVDAIVEGPNFEFATETR 131 CP AI E ++ E R Sbjct: 76 CPQGAIYEEQSWVPEIEAR 94 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 14/41 (34%) Query: 78 ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + P + +D KCI C C CP AI Sbjct: 10 FYEQRTPAPGADLDKLFFVQVDESKCIGCDACLSYCPTGAI 50 >gi|253681487|ref|ZP_04862284.1| nucleotide binding, CobQ/CobB/MinD/ParA family [Clostridium botulinum D str. 1873] gi|253561199|gb|EES90651.1| nucleotide binding, CobQ/CobB/MinD/ParA family [Clostridium botulinum D str. 1873] Length = 282 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 26/82 (31%), Gaps = 21/82 (25%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI+C CE +C AI+ ID C CG C CP +AI Sbjct: 63 NYNLCISCGKCEKVCRFDAISNNK---------------IDSYSCEGCGTCIIVCPNNAI 107 Query: 119 VEGPNFEFATETRQELYYDKER 140 E +Y K Sbjct: 108 KLK------EEKSANMYITKTD 123 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 11/33 (33%), Positives = 17/33 (51%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 +I+ CI CG C++ C DAI ++ E Sbjct: 61 EINYNLCISCGKCEKVCRFDAISNNKIDSYSCE 93 >gi|237755886|ref|ZP_04584480.1| NADH dehydrogenase i chain g [Sulfurihydrogenibium yellowstonense SS-5] gi|237691956|gb|EEP60970.1| NADH dehydrogenase i chain g [Sulfurihydrogenibium yellowstonense SS-5] Length = 631 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 6/89 (6%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRRT 93 PFEK + ++ RC+ C C ++C ++ +I R + Sbjct: 129 TPFEKIRPEEDWESDY----LEYVSNRCVLCMKCVSVCDNINKSHSITQIERGFEILISP 184 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 +D C CGLC + CPV AI+ P Sbjct: 185 ALKPMDTSTCEMCGLCVDICPVGAILFKP 213 >gi|258405237|ref|YP_003197979.1| NIL domain-containing protein [Desulfohalobium retbaense DSM 5692] gi|257797464|gb|ACV68401.1| NIL domain protein [Desulfohalobium retbaense DSM 5692] Length = 147 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 9/65 (13%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 ++ E+ C+ C LC A+CP QA++++ R KC CG C C Sbjct: 83 QQISRDEDSCVHCGLCTALCPTQALSLDHETRHVLFDV---------EKCTACGACTRVC 133 Query: 114 PVDAI 118 PV A+ Sbjct: 134 PVHAM 138 >gi|220925117|ref|YP_002500419.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methylobacterium nodulans ORS 2060] gi|219949724|gb|ACL60116.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methylobacterium nodulans ORS 2060] Length = 670 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 23/67 (34%), Gaps = 9/67 (13%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C C CP A++ + C+ CGLC CP D I P Sbjct: 524 CTLCHACVGACPTSALSDDPD---------RPVLTFSESLCVQCGLCAATCPEDVITLEP 574 Query: 123 NFEFATE 129 +FA Sbjct: 575 RLDFAAW 581 Score = 38.9 bits (89), Expect = 0.26, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 16/58 (27%), Gaps = 11/58 (18%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C +CP AI +D C CG C CP A Sbjct: 281 TGCTRCLEVCPTGAIAPAGD-----------HVAVDPFVCAGCGACASVCPTGAAAYT 327 >gi|206577903|ref|YP_002238214.1| electron transport complex, RnfABCDGE type, B subunit [Klebsiella pneumoniae 342] gi|288935202|ref|YP_003439261.1| electron transport complex, RnfABCDGE type subunit beta [Klebsiella variicola At-22] gi|290509260|ref|ZP_06548631.1| electron transport complex protein rnfB [Klebsiella sp. 1_1_55] gi|226735421|sp|B5XWQ0|RNFB_KLEP3 RecName: Full=Electron transport complex protein rnfB; AltName: Full=Nitrogen fixation protein rnfB gi|206566961|gb|ACI08737.1| electron transport complex, RnfABCDGE type, B subunit [Klebsiella pneumoniae 342] gi|288889911|gb|ADC58229.1| electron transport complex, RnfABCDGE type, B subunit [Klebsiella variicola At-22] gi|289778654|gb|EFD86651.1| electron transport complex protein rnfB [Klebsiella sp. 1_1_55] Length = 192 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 23/76 (30%), Gaps = 10/76 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI + + + C C LC CP I Sbjct: 113 DEPNCIGCTKCIQACPVDAIVGAT----------RAMHTVMNDLCTGCNLCVAPCPTQCI 162 Query: 119 VEGPNFEFATETRQEL 134 P + +L Sbjct: 163 SLVPVATTPETWKWDL 178 Score = 35.1 bits (79), Expect = 3.6, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C C +ACPVDAI Sbjct: 112 IDEPNCIGCTKCIQACPVDAI 132 >gi|187935492|ref|YP_001884833.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum B str. Eklund 17B] gi|187723645|gb|ACD24866.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum B str. Eklund 17B] Length = 362 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 12/62 (19%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 ++ CI C +C+ C AI + + ID KC CGLC CP +A+ Sbjct: 311 QDVCIKCGICKTSCVYDAIEVSNE------------LIIDNKKCFGCGLCVTRCPQNALS 358 Query: 120 EG 121 Sbjct: 359 MQ 360 >gi|170767989|ref|ZP_02902442.1| anaerobic sulfite reductase subunit C [Escherichia albertii TW07627] gi|170123477|gb|EDS92408.1| anaerobic sulfite reductase subunit C [Escherichia albertii TW07627] Length = 176 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 21/63 (33%), Gaps = 8/63 (12%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCI C C C A+ S + CI CG C ACP A Sbjct: 17 ERCIGCGACVKACAHHAVGCLSLKNGKA--------TKEESACIGCGECVLACPTLAWQR 68 Query: 121 GPN 123 P Sbjct: 69 KPE 71 >gi|120599632|ref|YP_964206.1| FAD linked oxidase domain-containing protein [Shewanella sp. W3-18-1] gi|146292374|ref|YP_001182798.1| FAD linked oxidase domain-containing protein [Shewanella putrefaciens CN-32] gi|120559725|gb|ABM25652.1| FAD linked oxidase domain protein [Shewanella sp. W3-18-1] gi|145564064|gb|ABP74999.1| FAD linked oxidase domain protein [Shewanella putrefaciens CN-32] gi|319425674|gb|ADV53748.1| respiratory FAD-dependent D-lactate dehydrogenase, Dld [Shewanella putrefaciens 200] Length = 934 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 6/62 (9%) Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNG 145 + D + KCI CG C++ CP A+ P AT R+ ERL +G Sbjct: 525 HVKNIKPCPVVDDFVDKCIECGFCEKTCPTSALNFSPRQRIATL-RE-----IERLEQSG 578 Query: 146 DR 147 D+ Sbjct: 579 DK 580 Score = 35.5 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 26/75 (34%), Gaps = 16/75 (21%) Query: 57 PNGEERCIACKLCEAICPAQAITI----------------ESGPRCHDGTRRTVRYDIDM 100 + ++CI C CE CP A+ +SG + R + Sbjct: 536 DDFVDKCIECGFCEKTCPTSALNFSPRQRIATLREIERLEQSGDKAAAAEMRAAAKYDVV 595 Query: 101 IKCIYCGLCQEACPV 115 C C LC ACPV Sbjct: 596 DTCAACQLCTIACPV 610 >gi|332305736|ref|YP_004433587.1| electron transport complex, RnfABCDGE type, B subunit [Glaciecola agarilytica 4H-3-7+YE-5] gi|332173065|gb|AEE22319.1| electron transport complex, RnfABCDGE type, B subunit [Glaciecola agarilytica 4H-3-7+YE-5] Length = 188 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 29/84 (34%), Gaps = 10/84 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E S E + E+ CI C C CP AI + + + Sbjct: 94 EATSLDAAHGTEDIKKVAYIREDECIGCTKCIQACPVDAILGAAKQ----------MHTV 143 Query: 99 DMIKCIYCGLCQEACPVDAIVEGP 122 +C C LC + CPVD I P Sbjct: 144 ISDECTGCDLCVDPCPVDCIDMIP 167 >gi|325958028|ref|YP_004289494.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanobacterium sp. AL-21] gi|325329460|gb|ADZ08522.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanobacterium sp. AL-21] Length = 453 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 37/95 (38%), Gaps = 10/95 (10%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93 I+ P + + ++ C+ CKLC ICP AI S Sbjct: 369 IHCPVSAIPRTATLKKSIKEGFTFVQDKMCMKCKLCTKICPEDAINENSEGNIV------ 422 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 +D KCIYCG C ACP AI+ FE + Sbjct: 423 ----VDDSKCIYCGACSNACPAKAIILEREFEVSE 453 Score = 40.9 bits (94), Expect = 0.059, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 11/74 (14%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R ++ E CI C +C +CP AIT+ R D+DM KCI C Sbjct: 317 RKLKNIKWDGTVSEDCITCGICSELCPKGAITL-----------RRGSIDVDMDKCILCE 365 Query: 108 LCQEACPVDAIVEG 121 C CPV AI Sbjct: 366 KCAIHCPVSAIPRT 379 Score = 37.0 bits (84), Expect = 0.79, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 3/65 (4%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++CI C+ C CP AI + + T D C+ C LC + CP DAI Sbjct: 357 DMDKCILCEKCAIHCPVSAIPRTATLKKSIKEGFTFVQDKM---CMKCKLCTKICPEDAI 413 Query: 119 VEGPN 123 E Sbjct: 414 NENSE 418 Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 26/62 (41%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 A++ + +C C C + CP A+ E + ++ C+ CGLC E Sbjct: 190 AIKDGVIDDTKCTLCLKCVSECPNSAMYTEDFKLHIRKPEEGETIEGSIVSCLNCGLCAE 249 Query: 112 AC 113 AC Sbjct: 250 AC 251 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 27/90 (30%), Gaps = 11/90 (12%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT----------VRYDIDMIKC 103 E C C CE CP AI ++ R ID KC Sbjct: 142 TNICTDPENCTLCGRCEYYCPTNAIIVDVDSEGLCTECRICEDVCPVGAIKDGVIDDTKC 201 Query: 104 IYCGLCQEACPVDAIVEGPNFEFATETRQE 133 C C CP A+ +F+ +E Sbjct: 202 TLCLKCVSECPNSAMY-TEDFKLHIRKPEE 230 Score = 35.5 bits (80), Expect = 2.6, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 10/72 (13%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 A+R CI C C+ CP AI + + +D KC CG+C+ Sbjct: 21 EAIRIIDGKAFSCITCGACKDACPNSAIFKN----------KFGGFVVDRAKCNACGVCE 70 Query: 111 EACPVDAIVEGP 122 CPV+ I Sbjct: 71 MTCPVNNIKIED 82 Score = 35.1 bits (79), Expect = 3.0, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 27/74 (36%), Gaps = 14/74 (18%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103 ++ + +C AC +CE CP I IE G C Sbjct: 44 PNSAIFKNKFGGFVVDRAKCNACGVCEMTCPVNNIKIEDGVVKGI--------------C 89 Query: 104 IYCGLCQEACPVDA 117 CG+C +ACPV A Sbjct: 90 ARCGICVDACPVKA 103 Score = 34.7 bits (78), Expect = 4.5, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 19/59 (32%), Gaps = 9/59 (15%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C++C C +C + CI CG+C E CP AI Sbjct: 300 FCVSCGKCVQVCDVNKARKLKNIKWDGT---------VSEDCITCGICSELCPKGAITL 349 >gi|325972135|ref|YP_004248326.1| NADH dehydrogenase (quinone) [Spirochaeta sp. Buddy] gi|324027373|gb|ADY14132.1| NADH dehydrogenase (quinone) [Spirochaeta sp. Buddy] Length = 595 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 23/71 (32%), Positives = 28/71 (39%), Gaps = 10/71 (14%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 L Y E+CI C C CP AI+ E R + ID CI CG+C Sbjct: 535 KKLISYTINAEKCIGCTACARKCPVAAISGE----------RKQVHVIDQSICIKCGVCM 584 Query: 111 EACPVDAIVEG 121 E C A+ Sbjct: 585 ETCKFGAVEIH 595 Score = 40.9 bits (94), Expect = 0.054, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 18/49 (36%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + I ++ + Y I+ KCI C C CPV AI Sbjct: 514 KHFKEEYLAHIVDKTCPSGKCKKLISYTINAEKCIGCTACARKCPVAAI 562 >gi|308271987|emb|CBX28595.1| hypothetical protein N47_G39190 [uncultured Desulfobacterium sp.] Length = 1029 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 11/67 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++C AC +C +CP I + ID KC CG+C CP AI Sbjct: 957 DSKKCAACLICVRVCPFGVPFINADGYSE----------IDPSKCHGCGVCASECPAKAI 1006 Query: 119 VEGPNFE 125 FE Sbjct: 1007 QLM-QFE 1012 >gi|283851796|ref|ZP_06369074.1| Cobyrinic acid ac-diamide synthase [Desulfovibrio sp. FW1012B] gi|283572916|gb|EFC20898.1| Cobyrinic acid ac-diamide synthase [Desulfovibrio sp. FW1012B] Length = 299 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 21/69 (30%), Gaps = 11/69 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L C C C +C AIT+ + + C CG C Sbjct: 61 LEVPVVDAAVCTRCGACRELCQFGAITVMGDTPL-----------VFVDMCHGCGGCLAV 109 Query: 113 CPVDAIVEG 121 CP AI G Sbjct: 110 CPAGAITPG 118 >gi|322420762|ref|YP_004199985.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Geobacter sp. M18] gi|320127149|gb|ADW14709.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Geobacter sp. M18] Length = 1196 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 34/93 (36%), Gaps = 16/93 (17%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP--------------- 84 +TS + A+ E+ CI C +C +CP AI +++ P Sbjct: 673 PTATSQYEKRNIAVEIPVWNEKLCIQCAICSFVCPHAAIRVKAYPSEALAGAPAGFKCAD 732 Query: 85 -RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + + V + + C CG C CPV Sbjct: 733 SKIAELKEHKVTFQVAPEDCTGCGACAHNCPVR 765 >gi|238749375|ref|ZP_04610880.1| Pyruvate-flavodoxin oxidoreductase [Yersinia rohdei ATCC 43380] gi|238712030|gb|EEQ04243.1| Pyruvate-flavodoxin oxidoreductase [Yersinia rohdei ATCC 43380] Length = 1177 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 26/142 (18%), Positives = 35/142 (24%), Gaps = 33/142 (23%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A + C C C A C Sbjct: 646 MLAGLGDAL------PVSAFPPDGTWPVGTTQWEKRNIAENIPLWQPDLCTQCNHCVAAC 699 Query: 74 PAQAITIESGP----------------RCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + D + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPEALSGAPDSLQSLDVKARDMRGQKYILQVAPEDCTGCNLCYEVCPAKD 759 Query: 116 ------DAIVEGPNFE-FATET 130 AI P E A E Sbjct: 760 RQDPTIRAINMKPRLEHLAAEK 781 >gi|227825030|ref|ZP_03989862.1| conserved hypothetical protein [Acidaminococcus sp. D21] gi|226905529|gb|EEH91447.1| conserved hypothetical protein [Acidaminococcus sp. D21] Length = 375 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 24/60 (40%), Gaps = 11/60 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C CK C C + AIT E G ID +C CG C AC DAI Sbjct: 194 DESLCRDCKRCAKECGSDAITYEKGKAH-----------IDKTRCTGCGRCIGACSFDAI 242 >gi|159040877|ref|YP_001540129.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Caldivirga maquilingensis IC-167] gi|157919712|gb|ABW01139.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Caldivirga maquilingensis IC-167] Length = 121 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 10/84 (11%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 + G R + ++ CI C C ++CP A ++ + Sbjct: 4 RSEIPTTPEGLRKYMRVIDDQDICIGCGACVSVCPTNAWELDENGKARLIWDW------- 56 Query: 100 MIKCIYCGLCQEACPVDAIVEGPN 123 CI C CPV+ I + P Sbjct: 57 ---CIDDFSCIPVCPVNCIWKTPE 77 >gi|94269897|ref|ZP_01291593.1| Ferredoxin:FAD-dependent pyridine nucleotide-disulphide oxidoreductase:4Fe-4S ferredoxin, iron-sulfur binding:FAD dependent oxidoreductase:Molybdopterin oxidoreductase Fe4S4 region [delta proteobacterium MLMS-1] gi|93451027|gb|EAT01992.1| Ferredoxin:FAD-dependent pyridine nucleotide-disulphide oxidoreductase:4Fe-4S ferredoxin, iron-sulfur binding:FAD dependent oxidoreductase:Molybdopterin oxidoreductase Fe4S4 region [delta proteobacterium MLMS-1] Length = 826 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 1/81 (1%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 T+PR+ + +CI C C C +A+ I +G G + + M Sbjct: 606 TTPRYARQEEHPTISVDLNKCIYCHKCANSCEYRALEITAGSFDEQGRAQDLSLT-FMEH 664 Query: 103 CIYCGLCQEACPVDAIVEGPN 123 C+ CG C + C A+ + Sbjct: 665 CVSCGKCVDNCSTGALNKKDQ 685 Score = 35.1 bits (79), Expect = 3.2, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 11/96 (11%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKL-----CEAICPAQAITIESGPRCHDGTR 91 P R + + ERC++C C+ A A ++ T Sbjct: 549 PERAIQDFNEVRLGFTEQMAKSEAERCLSCGCTAFDRCDLKEQAIAHGVDPNKTGMGTTP 608 Query: 92 RTVRYDIDM------IKCIYCGLCQEACPVDAIVEG 121 R R + KCIYC C +C A+ Sbjct: 609 RYARQEEHPTISVDLNKCIYCHKCANSCEYRALEIT 644 >gi|78185928|ref|YP_373971.1| putative glutamate synthase (NADPH) small subunit [Chlorobium luteolum DSM 273] gi|78165830|gb|ABB22928.1| iron-sulfur cluster-binding protein, GltD family [Chlorobium luteolum DSM 273] Length = 578 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 6/59 (10%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C CK C + CP +A+ G + Y KC+ C LC CP I G Sbjct: 521 CFDCKQCVSFCPQEAVLRHRD--NPSGEKVETDYV----KCVGCHLCSLVCPSGYIQMG 573 >gi|57640225|ref|YP_182703.1| pyruvate-formate lyase-activating enzyme [Thermococcus kodakarensis KOD1] gi|57158549|dbj|BAD84479.1| pyruvate-formate lyase-activating enzyme [Thermococcus kodakarensis KOD1] Length = 306 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 10/60 (16%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 +CI C C +CP +AIT + ID KC CG+C E CP A+ Sbjct: 56 YKCIHCHTCVNVCPLRAITFDENE----------VQHIDREKCDVCGVCAEFCPTSALKL 105 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 13/57 (22%), Positives = 18/57 (31%), Gaps = 1/57 (1%) Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 +G + KCI+C C CP+ AI N E R+ Sbjct: 31 GCPLRCWWCHNPEGISPRPQLMYLEYKCIHCHTCVNVCPLRAITFDEN-EVQHIDRE 86 >gi|86140247|ref|ZP_01058808.1| iron-sulfur cluster-binding protein [Roseobacter sp. MED193] gi|85823050|gb|EAQ43264.1| iron-sulfur cluster-binding protein [Roseobacter sp. MED193] Length = 657 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 31/103 (30%), Gaps = 14/103 (13%) Query: 25 RYFFKAKTTINYPFEKG-STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG 83 R + P K + L ++ C C C ++CP+ A+ Sbjct: 474 RQIARQAAMALQPEAKHLPLPAQAPYGAVLV----DQDSCTLCLSCVSLCPSGALGDNPD 529 Query: 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 + C+ CG+C CP DAI P Sbjct: 530 ---------LPQLRFQEEACLQCGICANTCPEDAISFEPRLNL 563 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 25/83 (30%), Gaps = 18/83 (21%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 C C CP AI+ ID + C CG C CP AI ++ Sbjct: 286 CSKCLDHCPTSAISSAGD-----------HVSIDPMICAGCGACAALCPSGAIT----YD 330 Query: 126 FATET---RQELYYDKERLLNNG 145 R+ K L G Sbjct: 331 APATDAQFRRIQVLAKAYLEAGG 353 >gi|325578318|ref|ZP_08148453.1| electron transport complex protein RnfB [Haemophilus parainfluenzae ATCC 33392] gi|325160054|gb|EGC72183.1| electron transport complex protein RnfB [Haemophilus parainfluenzae ATCC 33392] Length = 194 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 20/64 (31%), Gaps = 10/64 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C C CP AI + + I C C LC CP D Sbjct: 103 FIDENMCIGCTKCIQACPVDAIIGTNK----------AMHTIIADLCTGCELCVAPCPTD 152 Query: 117 AIVE 120 I Sbjct: 153 CISM 156 Score = 35.8 bits (81), Expect = 1.7, Method: Composition-based stats. Identities = 13/25 (52%), Positives = 15/25 (60%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 ID CI C C +ACPVDAI+ Sbjct: 104 IDENMCIGCTKCIQACPVDAIIGTN 128 >gi|297623162|ref|YP_003704596.1| dihydroorotate dehydrogenase family protein [Truepera radiovictrix DSM 17093] gi|297164342|gb|ADI14053.1| dihydroorotate dehydrogenase family protein [Truepera radiovictrix DSM 17093] Length = 451 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 21/89 (23%), Gaps = 8/89 (8%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE-------SGPRCHDGTRR 92 + +CI C LC C A Sbjct: 322 PRYSPFNQLDLSYKVVARIDPAKCIHCNLCFVACDEGAHQCIDLTVDGVKIDPATYAGPA 381 Query: 93 TVRYDIDMIKCIYCGLCQEACPVD-AIVE 120 + + C+ C LC CPVD I Sbjct: 382 KTQPVVREDDCVGCNLCSLVCPVDGCITM 410 >gi|296386938|ref|ZP_06876437.1| dihydropyrimidine dehydrogenase [Pseudomonas aeruginosa PAb1] Length = 424 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 4/66 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117 ++ CI C C C + + DGT Y++ +C+ C LCQ CPV + Sbjct: 341 DQDACIGCGRCHIACEDTSHQAIASLPRADGTH---HYEVIDAECVGCNLCQITCPVENC 397 Query: 118 IVEGPN 123 I P Sbjct: 398 IEMVPQ 403 >gi|295105925|emb|CBL03468.1| hypothetical protein [Gordonibacter pamelaeae 7-10-1-b] Length = 304 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 24/73 (32%), Gaps = 7/73 (9%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G + CI C C C A ++ D R C+ CG Sbjct: 219 GRMGVVNVRYDRTACIHCDACRKACLADPSILDPVLAGDDTCVR-------AGDCMACGS 271 Query: 109 CQEACPVDAIVEG 121 C +ACP A+ G Sbjct: 272 CVDACPARALSLG 284 >gi|229525628|ref|ZP_04415033.1| electron transport complex protein RnfC [Vibrio cholerae bv. albensis VL426] gi|229339209|gb|EEO04226.1| electron transport complex protein RnfC [Vibrio cholerae bv. albensis VL426] Length = 841 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 29/109 (26%), Gaps = 20/109 (18%) Query: 13 LKEFVGA---FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69 L + L + P K + + L N CI C C Sbjct: 360 LPRLIMGGPMMGFTLPHA-------QVPITKTANCILAPTRNELTSSDNEMA-CIRCGQC 411 Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMI----KCIYCGLCQEACP 114 CP + P+ + +D CI CG C CP Sbjct: 412 AEACPVSLL-----PQQLQWHAKAEEFDKCEELNLKDCIECGACAYVCP 455 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 10/13 (76%), Positives = 10/13 (76%) Query: 103 CIYCGLCQEACPV 115 CI CG C EACPV Sbjct: 405 CIRCGQCAEACPV 417 >gi|225175250|ref|ZP_03729246.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Dethiobacter alkaliphilus AHT 1] gi|225169426|gb|EEG78224.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Dethiobacter alkaliphilus AHT 1] Length = 696 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 27/87 (31%), Gaps = 10/87 (11%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 E+ + R +E C C C CP I+ + Sbjct: 468 DERAALCESRRCLDCAAGAECIDEICAVCLTCLRTCPYGVPHIDDEGN----------FT 517 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNF 124 I +C CGLC CP AI ++ Sbjct: 518 IRNEECQACGLCVGICPASAIRFRNHY 544 >gi|225175926|ref|ZP_03729918.1| hydrogenase, Fe-only [Dethiobacter alkaliphilus AHT 1] gi|225168514|gb|EEG77316.1| hydrogenase, Fe-only [Dethiobacter alkaliphilus AHT 1] Length = 574 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 3/65 (4%) Query: 59 GEERCIACKLCEAIC-PAQAITIESGPRCHDGTRRTVR--YDIDMIKCIYCGLCQEACPV 115 ++CI C C +C QA+ T Y+++ C+ CG C CPV Sbjct: 144 EPDKCIYCGRCVRVCSDVQAVNALDFFNRGFDTEVGPPPGYNLNDSVCVQCGQCATTCPV 203 Query: 116 DAIVE 120 AI E Sbjct: 204 GAIYE 208 Score = 35.1 bits (79), Expect = 3.6, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 12/66 (18%) Query: 58 NGEERCIACK---LCEAICPAQAITIESGPRCHDGTRRTVRYD-------IDMIKCIYCG 107 N C CK CE A+ + + G +R + D + KCIYCG Sbjct: 95 NHPLECPTCKRNLNCE--LQQLALDMGVSEVHYQGRQRELPMDTSSPALVREPDKCIYCG 152 Query: 108 LCQEAC 113 C C Sbjct: 153 RCVRVC 158 >gi|167377560|ref|XP_001734446.1| periplasmic [Fe] hydrogenase large subunit [Entamoeba dispar SAW760] gi|165904061|gb|EDR29423.1| periplasmic [Fe] hydrogenase large subunit, putative [Entamoeba dispar SAW760] Length = 469 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 29/103 (28%), Gaps = 10/103 (9%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI----------ESGPRCHDG 89 S G+ +C+ C +C C + + Sbjct: 2 PPKPSHTITGQDHNNAIEIDWSKCMGCGMCAMRCNYGVLHKSGPKIPPTVTPNRENVTQP 61 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 R ID C+ CG C AC AI + E E ++ Sbjct: 62 NDDKTRVLIDESDCVGCGQCSSACNFGAIKPVSHIERVFEAKK 104 >gi|229580876|ref|YP_002839275.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Sulfolobus islandicus Y.N.15.51] gi|228011592|gb|ACP47353.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Sulfolobus islandicus Y.N.15.51] gi|323475824|gb|ADX86430.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Sulfolobus islandicus REY15A] gi|323478603|gb|ADX83841.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Sulfolobus islandicus HVE10/4] Length = 87 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 27/75 (36%), Gaps = 11/75 (14%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G + + +CI CK+C CP I +G +D C CG+ Sbjct: 23 GAWRIVKPVVDYNKCIGCKVCFMFCPESTIVPSNGKV-----------RVDYEYCKGCGV 71 Query: 109 CQEACPVDAIVEGPN 123 C CPV AI Sbjct: 72 CANVCPVKAISMVNE 86 >gi|152982452|ref|YP_001353663.1| iron-sulfur binding protein [Janthinobacterium sp. Marseille] gi|151282529|gb|ABR90939.1| iron-sulfur binding protein [Janthinobacterium sp. Marseille] Length = 699 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 9/79 (11%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ C C C CP A+T + + C+ CGLC++ CP +AI Sbjct: 564 NKDSCTLCMSCVGACPESALTDNANMPQLRFIEKN---------CVQCGLCEKTCPENAI 614 Query: 119 VEGPNFEFATETRQELYYD 137 P +Q + + Sbjct: 615 TLAPRLLLTDAAKQAVVLN 633 Score = 40.5 bits (93), Expect = 0.076, Method: Composition-based stats. Identities = 9/31 (29%), Positives = 14/31 (45%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 ID+ C C C + CP +AI + + Sbjct: 196 IDLEACTRCNACVDVCPENAIDLTYQIDLSK 226 Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 11/55 (20%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C +C A+A++ ++ C+ CG C CP A+ Sbjct: 322 VGCTACIDVCSAEAVSHHGDQ-----------IKVNPNLCVGCGACTTVCPSGAL 365 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 31/85 (36%), Gaps = 22/85 (25%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E C C C +CP AI + Y ID+ KC C +AC Sbjct: 195 PIDLEACTRCNACVDVCPENAID--------------LTYQIDLSKCKSHRDCVKACGTI 240 Query: 117 -AIVEGPNFEFATETRQ---ELYYD 137 AI +F + R +L +D Sbjct: 241 GAI----DFARSVTQRSGDFDLIFD 261 >gi|160878249|ref|YP_001557217.1| NADH dehydrogenase (quinone) [Clostridium phytofermentans ISDg] gi|160426915|gb|ABX40478.1| NADH dehydrogenase (quinone) [Clostridium phytofermentans ISDg] Length = 628 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 38/98 (38%), Gaps = 15/98 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 ++Y F+ + + +K AL E C C C +CP AI+ E Sbjct: 545 TIKY-FRDEYIAHVVDKKCPAGQC----KALMTLKIIPELCKGCTKCARLCPVSAISGEV 599 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ID KCI CG C+++C AI+E Sbjct: 600 KKLHS----------IDTKKCIKCGACKDSCGFKAIIE 627 >gi|326317529|ref|YP_004235201.1| RnfABCDGE type electron transport complex subunit B [Acidovorax avenae subsp. avenae ATCC 19860] gi|323374365|gb|ADX46634.1| electron transport complex, RnfABCDGE type, B subunit [Acidovorax avenae subsp. avenae ATCC 19860] Length = 244 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 21/64 (32%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C LC CP AI + + C C LC CPVD I Sbjct: 90 DELACIGCTLCIKACPTDAILGT----------HKRMHTVIEAHCTGCELCIPVCPVDCI 139 Query: 119 VEGP 122 Sbjct: 140 AMEN 143 Score = 37.4 bits (85), Expect = 0.61, Method: Composition-based stats. Identities = 13/25 (52%), Positives = 16/25 (64%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 ID + CI C LC +ACP DAI+ Sbjct: 89 IDELACIGCTLCIKACPTDAILGTH 113 >gi|255264310|ref|ZP_05343652.1| dihydroorotate dehydrogenase family protein [Thalassiobium sp. R2A62] gi|255106645|gb|EET49319.1| dihydroorotate dehydrogenase family protein [Thalassiobium sp. R2A62] Length = 434 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 8/76 (10%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI+C C A C E + + +C+ Sbjct: 330 QYLNLNYVAKAKIDQDACISCGRCYAAC-------EDTSHQAIAMSPDRVFTVIDEECVA 382 Query: 106 CGLCQEACPV-DAIVE 120 C LC + CPV D I Sbjct: 383 CNLCVDVCPVEDCISM 398 Score = 33.9 bits (76), Expect = 8.5, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 17/51 (33%), Gaps = 3/51 (5%) Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP---VDAIVEGPN 123 A + + + ID CI CG C AC AI P+ Sbjct: 320 GAAVPNTTDWQYLNLNYVAKAKIDQDACISCGRCYAACEDTSHQAIAMSPD 370 >gi|268679822|ref|YP_003304253.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfurospirillum deleyianum DSM 6946] gi|268617853|gb|ACZ12218.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfurospirillum deleyianum DSM 6946] Length = 139 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 4/65 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C C +CPA AI IE + + + C CG C CP A+ Sbjct: 6 ENTLCVLCNTCLFVCPANAICIEKTAQTESMYD----FTLWHNSCTLCGNCIYYCPSGAL 61 Query: 119 VEGPN 123 Sbjct: 62 RMSDE 66 >gi|170761427|ref|YP_001785345.1| iron-sulfur cluster-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|169408416|gb|ACA56827.1| iron-sulfur cluster-binding protein [Clostridium botulinum A3 str. Loch Maree] Length = 387 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 5/58 (8%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+CI C C +CP + I+ + +M KCI C CQE CP AI Sbjct: 319 EKCIGCNRCAEVCPEKPYVIDMIKKGDKKIPVW-----NMKKCIRCFCCQELCPKGAI 371 >gi|281358774|ref|ZP_06245249.1| putative PAS/PAC sensor protein [Victivallis vadensis ATCC BAA-548] gi|281314729|gb|EFA98767.1| putative PAS/PAC sensor protein [Victivallis vadensis ATCC BAA-548] Length = 582 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 11/56 (19%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 C C C CP +AI + G + C+ CG C E CPV A Sbjct: 13 ECQDCYKCVRHCPVKAIRVRDGHAA-----------VIPELCVACGKCVEVCPVKA 57 >gi|148642366|ref|YP_001272879.1| polyferredoxin, iron-sulfur binding [Methanobrevibacter smithii ATCC 35061] gi|261351019|ref|ZP_05976436.1| putative 4Fe-4S binding domain protein [Methanobrevibacter smithii DSM 2374] gi|148551383|gb|ABQ86511.1| polyferredoxin, iron-sulfur binding [Methanobrevibacter smithii ATCC 35061] gi|288860359|gb|EFC92657.1| putative 4Fe-4S binding domain protein [Methanobrevibacter smithii DSM 2374] Length = 274 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ CI C C C ++ ++ R T +I+ +C+ C LC+E CPV+AI Sbjct: 183 NKKLCIGCGACVQFCENDSVKLD---RTIGPIVHTKNLEINQDECVNCYLCEENCPVEAI 239 Query: 119 VEGPN 123 Sbjct: 240 WLDEE 244 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 10/63 (15%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 RCI C +C CP AI P + C+ C +C + CPV AI Sbjct: 48 PRCIRCNMCVDQCPVDAI----EPANIFKIAKITH------DCVKCEICVQTCPVSAIKL 97 Query: 121 GPN 123 N Sbjct: 98 IDN 100 Score = 37.4 bits (85), Expect = 0.77, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 11/70 (15%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + ++ C+ C LCE CP +AI ++ ++ KCI C C C Sbjct: 215 KNLEINQDECVNCYLCEENCPVEAIWLDEEKVV-----------LNNDKCIRCINCTSHC 263 Query: 114 PVDAIVEGPN 123 PV A+ Sbjct: 264 PVGALNFVEI 273 Score = 35.1 bits (79), Expect = 3.3, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 17/31 (54%) Query: 102 KCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 +CI C +C + CPVDAI F+ A T Sbjct: 49 RCIRCNMCVDQCPVDAIEPANIFKIAKITHD 79 >gi|118591778|ref|ZP_01549174.1| iron-sulfur cluster-binding protein [Stappia aggregata IAM 12614] gi|118435771|gb|EAV42416.1| iron-sulfur cluster-binding protein [Stappia aggregata IAM 12614] Length = 654 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 30/82 (36%), Gaps = 9/82 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ C C C ++CP+ A+ + C+ CG+C CP A+ Sbjct: 502 DQDACTLCLSCVSLCPSGALKENPDA---------PQLRFQEDACLQCGICTTICPEKAL 552 Query: 119 VEGPNFEFATETRQELYYDKER 140 P + + + + +E Sbjct: 553 SLDPRLDLSDDALRARILKEEE 574 Score = 38.2 bits (87), Expect = 0.45, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 11/55 (20%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C +CP AIT + +D + C CG C CP AI Sbjct: 280 TGCTRCLDLCPTGAITPDGD-----------HVSVDTMVCAGCGSCSAVCPSGAI 323 >gi|84490227|ref|YP_448459.1| ferredoxin [Methanosphaera stadtmanae DSM 3091] gi|84373546|gb|ABC57816.1| EhbL [Methanosphaera stadtmanae DSM 3091] Length = 175 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 2/60 (3%) Query: 62 RCIACKLCEAICPAQAITIESGPRCH--DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 CI C C +CP +AI + DG +T +ID I C++C C + CPV A+ Sbjct: 49 ECIGCGGCSNVCPTKAIIMVPVEPVEIADGIVKTAIPEIDEINCVHCYQCHDFCPVYALF 108 Score = 38.5 bits (88), Expect = 0.33, Method: Composition-based stats. Identities = 10/20 (50%), Positives = 11/20 (55%) Query: 103 CIYCGLCQEACPVDAIVEGP 122 CI CG C CP AI+ P Sbjct: 50 CIGCGGCSNVCPTKAIIMVP 69 >gi|88705801|ref|ZP_01103510.1| iron-sulfur cluster binding protein [Congregibacter litoralis KT71] gi|88699872|gb|EAQ96982.1| iron-sulfur cluster binding protein [Congregibacter litoralis KT71] Length = 473 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/115 (18%), Positives = 30/115 (26%), Gaps = 14/115 (12%) Query: 29 KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88 + ++ P E L +CI C C CP Sbjct: 281 RRPGDVDGPLETHFVLLDNERSDILASDYAEMLQCIRCGACLNHCPVYMSAGGHAYGWVY 340 Query: 89 GTRRTVRYD----------IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 + C CG C+E CP AI P + + R+E Sbjct: 341 PGPMGSVLTPLLTSLEDGGLLPDACTACGRCEEVCP-AAI---PIPDLLRDLREE 391 >gi|330502371|ref|YP_004379240.1| electron transport complex protein RnfB [Pseudomonas mendocina NK-01] gi|328916657|gb|AEB57488.1| electron transport complex protein RnfB [Pseudomonas mendocina NK-01] Length = 191 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 27/83 (32%), Gaps = 10/83 (12%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 + GE E CI C C CP AI + + Sbjct: 89 DVEAEPLDAVEGEKPQMVAFIREAECIGCTKCIQACPVDAIVGAA----------RQMHT 138 Query: 98 IDMIKCIYCGLCQEACPVDAIVE 120 + + +C C LC E CPVD I Sbjct: 139 VIVSECTGCDLCVEPCPVDCIDM 161 >gi|328955433|ref|YP_004372766.1| hydrogenase, Fe-only [Coriobacterium glomerans PW2] gi|328455757|gb|AEB06951.1| hydrogenase, Fe-only [Coriobacterium glomerans PW2] Length = 585 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 32/99 (32%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 PF+K + L R + +C+ C A + + H Sbjct: 120 QLPFDKHLAGEHWNLSFPLIRNNDKCIKCMRCIQVCDKVQATGVWDITNRAGHTMVNTVG 179 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 I+ C CG C CPV A+ E + E + + Sbjct: 180 GKPIEETGCSLCGQCITHCPVGALRERDDTEQVFDALGD 218 >gi|320101170|ref|YP_004176762.1| 4Fe-4S ferredoxin, iron-sulfur-binding domain-containing protein [Desulfurococcus mucosus DSM 2162] gi|319753522|gb|ADV65280.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Desulfurococcus mucosus DSM 2162] Length = 160 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 32/86 (37%), Gaps = 10/86 (11%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 EKG PR R E I C +C + CP A++ ++ Sbjct: 15 EEKGLLPPRERLAKGPVAVLECPEE-IPCNICVSACPFNAVS---------KSKIYEIPK 64 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPN 123 +D KCI CG+C CP AI Sbjct: 65 LDPEKCIGCGVCVAKCPGLAIFVVDI 90 >gi|254785634|ref|YP_003073063.1| electron transport complex, RnfABCDGE type, C subunit [Teredinibacter turnerae T7901] gi|237685331|gb|ACR12595.1| electron transport complex, RnfABCDGE type, C subunit [Teredinibacter turnerae T7901] Length = 505 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 25/72 (34%), Gaps = 2/72 (2%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + CI C C CP + +E R D + CI CG C CP Sbjct: 367 RSEASPCIRCASCVEACPMGLLPLEMAAR-SRADDFEGADDYGLRDCILCGSCAYVCPSH 425 Query: 117 AIVEGPNFEFAT 128 I F++A Sbjct: 426 -IPLVQYFQYAK 436 Score = 37.4 bits (85), Expect = 0.68, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 17/42 (40%), Gaps = 4/42 (9%) Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 + + CI C C EACP+ + E A +R + Sbjct: 362 KHEVPRSEASPCIRCASCVEACPMGLLPL----EMAARSRAD 399 >gi|256822167|ref|YP_003146130.1| RnfABCDGE type electron transport complex subunit B [Kangiella koreensis DSM 16069] gi|256795706|gb|ACV26362.1| electron transport complex, RnfABCDGE type, B subunit [Kangiella koreensis DSM 16069] Length = 195 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 28/82 (34%), Gaps = 10/82 (12%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E E R E+ CI C C CP AI + + + Sbjct: 90 EVIPLDEERGEEQPPRVAYIREDECIGCTKCIQACPVDAILGAPK----------LMHTV 139 Query: 99 DMIKCIYCGLCQEACPVDAIVE 120 + +C C LC E CPVD I Sbjct: 140 IIDECTGCDLCVEPCPVDCIDM 161 >gi|226356948|ref|YP_002786688.1| polyferredoxin [Deinococcus deserti VCD115] gi|226318938|gb|ACO46934.1| putative polyferredoxin [Deinococcus deserti VCD115] Length = 341 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 16/104 (15%) Query: 36 YPFEKGSTSPRFRGE----------HALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 P E+ ++R P +E+CI C +C +CP +AIT + P Sbjct: 231 VPEERTPQEWKWRSRALSPAPPETAGVHWPAPLVDEKCIDCPVCANVCPTEAITRDLQPD 290 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 VR +D+ C C C +CP AI + A Sbjct: 291 GG------VRLLLDLSACTGCMACLHSCPPGAIYAQDEWLPAAF 328 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 9/56 (16%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C CP QA+ + ID C CGLC + CP A+ G Sbjct: 34 CDACHTTCPHQAVNLGPLGAS---------IQIDPDLCTGCGLCVQVCPTGALEYG 80 >gi|225027278|ref|ZP_03716470.1| hypothetical protein EUBHAL_01534 [Eubacterium hallii DSM 3353] gi|224955431|gb|EEG36640.1| hypothetical protein EUBHAL_01534 [Eubacterium hallii DSM 3353] Length = 263 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 29/89 (32%), Gaps = 11/89 (12%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 P+ E CI CK+C +C A AIT+E+ Sbjct: 185 KSLIELVPYAAPHKVQCSSKEFGKAVKEVCSAGCIGCKMCTRVCEADAITVENNIA---- 240 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ID KC CG C E CP I Sbjct: 241 -------KIDYSKCTGCGKCAEKCPAKII 262 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 11/60 (18%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C +C AI + +G +D KC+ CG C CP I P Sbjct: 144 CTGFGSCVKVCDFDAIHVINGVAV-----------VDKEKCVACGKCVATCPKSLIELVP 192 Score = 35.5 bits (80), Expect = 2.3, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 5/78 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-----DIDMIKCIYCGLCQEAC 113 +E+C+AC C A CP I + H + + ++ CI C +C C Sbjct: 169 DKEKCVACGKCVATCPKSLIELVPYAAPHKVQCSSKEFGKAVKEVCSAGCIGCKMCTRVC 228 Query: 114 PVDAIVEGPNFEFATETR 131 DAI N ++ Sbjct: 229 EADAITVENNIAKIDYSK 246 >gi|94266820|ref|ZP_01290483.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium MLMS-1] gi|93452521|gb|EAT03113.1| 4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium MLMS-1] Length = 345 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 16/64 (25%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP--VDAIV 119 CI C C +CP +AI+ ++ I KCI CG C+ CP VDA+ Sbjct: 108 DCIKCGKCVHVCPTEAISEDN--------------RIAREKCIGCGNCEAICPPKVDAVR 153 Query: 120 EGPN 123 N Sbjct: 154 YEHN 157 Score = 40.1 bits (92), Expect = 0.091, Method: Composition-based stats. Identities = 12/37 (32%), Positives = 13/37 (35%) Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 VR CI CG C CP +AI E Sbjct: 92 VGMPGDHHVRKAFITADCIKCGKCVHVCPTEAISEDN 128 >gi|89902038|ref|YP_524509.1| formate dehydrogenase subunit alpha [Rhodoferax ferrireducens T118] gi|89346775|gb|ABD70978.1| formate dehydrogenase, alpha subunit [Rhodoferax ferrireducens T118] Length = 942 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 27/65 (41%), Gaps = 5/65 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114 + CI C C C + + H G + + +D + C+ CG C +ACP Sbjct: 165 NLDACIQCTRCVRACR-EVQVNDVIGYAHRGAQSQIVFDLNDAMGDSSCVACGECVQACP 223 Query: 115 VDAIV 119 A++ Sbjct: 224 TGALM 228 >gi|18977042|ref|NP_578399.1| putative ATPase RIL [Pyrococcus furiosus DSM 3638] gi|18892677|gb|AAL80794.1| RNase l inhibitor [Pyrococcus furiosus DSM 3638] Length = 590 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 21/73 (28%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 +R ++C K +C G + I C CG+C Sbjct: 1 MRIAVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYKPIIQEASCTGCGICVHK 60 Query: 113 CPVDAIVEGPNFE 125 CP AI E Sbjct: 61 CPFKAISIVNLPE 73 >gi|76802482|ref|YP_327490.1| ferredoxin II [Natronomonas pharaonis DSM 2160] gi|76558347|emb|CAI49937.1| ferredoxin II [Natronomonas pharaonis DSM 2160] Length = 109 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 2/69 (2%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + C+ C CP P + ++ D +CI C LC + C Sbjct: 37 THVAVDLDICVGDGACLEDCPVDVFEWIDTPDHPESEQKVTPAD--EDQCIDCMLCVDVC 94 Query: 114 PVDAIVEGP 122 PVDAI P Sbjct: 95 PVDAIDVDP 103 >gi|75759831|ref|ZP_00739907.1| Formate dehydrogenase alpha chain [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74492689|gb|EAO55829.1| Formate dehydrogenase alpha chain [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 280 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 5/89 (5%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+E + + Y +CIAC C +C + R + Sbjct: 133 KYPYE--PKVSACEVDMSHPFYRYDPNQCIACGQCVEVCQNLQVNETISIDWSLDRPRVI 190 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAIVE 120 + I+ C+ CG C CP +A++E Sbjct: 191 WDNGVSINDSSCVSCGQCVTVCPCNALME 219 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIK 102 R N C C C+ + IE ++ Y D + Sbjct: 99 RILENHLLYCTVCDNNNGNCKVHNTVHMMGIEEQKYPYEPKVSACEVDMSHPFYRYDPNQ 158 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 159 CIACGQCVEVC 169 >gi|330506428|ref|YP_004382856.1| glutamate synthase [Methanosaeta concilii GP-6] gi|328927236|gb|AEB67038.1| glutamate synthase [Methanosaeta concilii GP-6] Length = 504 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 29/107 (27%), Positives = 43/107 (40%), Gaps = 14/107 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E +C C+ CE C T + + R D KC+ C C CP DAI Sbjct: 14 DEAKCGQCRGCERQCAFGTHTYDP---------VSDRLISDDNKCVGCQRCAIFCPRDAI 64 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWES--EIVRNIVTDSPYR 163 V PN + R + +E+L + + E+ I+ D P+R Sbjct: 65 VVRPN---PSFYRPNASWSREKLEDVKKQAETGGVILTGCGNDKPFR 108 >gi|309388355|gb|ADO76235.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Halanaerobium praevalens DSM 2228] Length = 98 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 10/63 (15%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++CI C LC +C P + R + D C C +C E CPVDAI Sbjct: 43 DKCIQCLLCAPVC----------PDSSIPVKDGQRLEFDYDHCKGCAICAEVCPVDAIEM 92 Query: 121 GPN 123 P Sbjct: 93 VPE 95 >gi|298675376|ref|YP_003727126.1| glutamate synthase [Methanohalobium evestigatum Z-7303] gi|298288364|gb|ADI74330.1| Glutamate synthase (NADPH) [Methanohalobium evestigatum Z-7303] Length = 503 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 28/81 (34%), Gaps = 14/81 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RC C +C C A+ G D KC+ C C CP +AI Sbjct: 13 DSARCRKCGICVNNCSFGALEFRDGRVIPD-----------DSKCVACYRCVSKCPDNAI 61 Query: 119 VEGPNFEFATETRQELYYDKE 139 N+++A R + E Sbjct: 62 TIS-NYQWA--NRGNANWTPE 79 >gi|288574136|ref|ZP_06392493.1| Cobyrinic acid ac-diamide synthase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569877|gb|EFC91434.1| Cobyrinic acid ac-diamide synthase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 281 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 10/69 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L E+ C C LC C A+ + ++ C CG+C Sbjct: 57 LPMPVFDEKLCKRCGLCAKECRFNALVQFGD----------LMPRLNEGLCHGCGVCSMV 106 Query: 113 CPVDAIVEG 121 CP AI EG Sbjct: 107 CPHGAITEG 115 >gi|289581689|ref|YP_003480155.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Natrialba magadii ATCC 43099] gi|289531242|gb|ADD05593.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Natrialba magadii ATCC 43099] Length = 159 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 2/65 (3%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + CIA C CP P + + +CI C LC + C Sbjct: 89 THVAVDFDLCIADGACLEDCPVDVFEWVETPGHPESEEKADPT--HEAQCIDCMLCVDVC 146 Query: 114 PVDAI 118 PVDAI Sbjct: 147 PVDAI 151 >gi|197302545|ref|ZP_03167600.1| hypothetical protein RUMLAC_01273 [Ruminococcus lactaris ATCC 29176] gi|197298443|gb|EDY32988.1| hypothetical protein RUMLAC_01273 [Ruminococcus lactaris ATCC 29176] Length = 383 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 10/88 (11%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + E +C C C +CP AIT + + V ID KCI C C + Sbjct: 1 MIAQICEESKCTGCLACMNLCPCGAITCQEREDGN------VIPQIDPEKCIECHRCVQG 54 Query: 113 CPVDAIVEGPN----FEFATETRQELYY 136 CP + + E + + R+E Y Sbjct: 55 CPENHVKEKHEPRQCYATWQKDRKERKY 82 >gi|220909415|ref|YP_002484726.1| bidirectional hydrogenase complex protein HoxU [Cyanothece sp. PCC 7425] gi|219866026|gb|ACL46365.1| NADH dehydrogenase (ubiquinone) [Cyanothece sp. PCC 7425] Length = 238 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 23/68 (33%), Gaps = 4/68 (5%) Query: 56 YPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLCQE 111 + RCI C C +C A + R + + C CG C + Sbjct: 141 FTIDHNRCILCTRCVRVCDEIEGAHVWDVAQRGAACYIVSGLNQPWGEVEACTSCGKCVD 200 Query: 112 ACPVDAIV 119 ACP AI Sbjct: 201 ACPTGAIF 208 >gi|169830328|ref|YP_001716310.1| molybdopterin oxidoreductase [Candidatus Desulforudis audaxviator MP104C] gi|169637172|gb|ACA58678.1| molybdopterin oxidoreductase [Candidatus Desulforudis audaxviator MP104C] Length = 998 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 23/83 (27%), Gaps = 3/83 (3%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-- 96 E P + +CI C +C C A + Sbjct: 128 ELRPVKPGKPLDDTHPWIVRNHNKCILCGICVRTCREIAQVNAIDFAFRGRATTISTFGN 187 Query: 97 -DIDMIKCIYCGLCQEACPVDAI 118 + C+ CG C CPV A+ Sbjct: 188 KPLHESNCVSCGECVARCPVGAL 210 Score = 37.4 bits (85), Expect = 0.60, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 31/90 (34%), Gaps = 3/90 (3%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T Y G+ +P + + + RC+AC +C C + D R Sbjct: 367 YTGVYQEMAGTPAPFAEVDESNPYFVLDRSRCVACGICLRTCRQVNGADALEFKRVDNHR 426 Query: 92 RTVRYD---IDMIKCIYCGLCQEACPVDAI 118 V + C CG C CPV A+ Sbjct: 427 VVVPRQGGSLAESACESCGECVARCPVGAL 456 >gi|319427482|gb|ADV55556.1| molybdopterin-binding oxidoreductase [Shewanella putrefaciens 200] Length = 1424 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 22/75 (29%), Gaps = 15/75 (20%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK---------------C 103 RCI+C C C Q+ D+ + C Sbjct: 647 DANRCISCGKCVDACNQQSGHCVIQFAYDSYQALPQTEDLTQERRAPRVGFSASMADSQC 706 Query: 104 IYCGLCQEACPVDAI 118 + CG C + CP A+ Sbjct: 707 VQCGNCVQVCPTGAL 721 Score = 33.9 bits (76), Expect = 6.6, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 4/48 (8%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 +C+ C C +CP A+ R D T I C YCG+ Sbjct: 704 SQCVQCGNCVQVCPTGALVDARDKRQGDKTSLKTASTI----CTYCGV 747 >gi|14521566|ref|NP_127042.1| 2-ketoisovalerate ferredoxin oxidoreductase subunit delta [Pyrococcus abyssi GE5] gi|14195412|sp|Q9UYZ0|VORD_PYRAB RecName: Full=Ketoisovalerate oxidoreductase subunit vorD; Short=VOR; AltName: Full=2-oxoisovalerate ferredoxin reductase subunit delta; AltName: Full=2-oxoisovalerate oxidoreductase delta chain gi|5458785|emb|CAB50272.1| vorD ketoisovalerate oxidoreductase subunit vorD (EC 1.-.-.-) [Pyrococcus abyssi GE5] Length = 105 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 32/97 (32%), Gaps = 13/97 (13%) Query: 30 AKTTINYPFEKGSTS---PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC 86 K+ YP + F G+ E +C+ C +C CP AI I+ Sbjct: 17 PKSVDEYPEAPITLGTTLVNFTGDWRTFMPVIDESKCVKCYICWKFCPEPAIYIKEDG-- 74 Query: 87 HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 ID C CG+C CP AI Sbjct: 75 --------FVAIDYDYCKGCGICANECPTKAITMVRE 103 >gi|120597724|ref|YP_962298.1| formate dehydrogenase subunit alpha [Shewanella sp. W3-18-1] gi|120557817|gb|ABM23744.1| formate dehydrogenase, alpha subunit [Shewanella sp. W3-18-1] Length = 1424 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 22/75 (29%), Gaps = 15/75 (20%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK---------------C 103 RCI+C C C Q+ D+ + C Sbjct: 647 DANRCISCGKCVDACNQQSGHCVIQFAYDSYQALPQTEDLTQERRAPRVGFSASMADSQC 706 Query: 104 IYCGLCQEACPVDAI 118 + CG C + CP A+ Sbjct: 707 VQCGNCVQVCPTGAL 721 Score = 33.9 bits (76), Expect = 6.6, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 4/48 (8%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 +C+ C C +CP A+ R D T I C YCG+ Sbjct: 704 SQCVQCGNCVQVCPTGALVDARDKRQGDKTSLKTASTI----CTYCGV 747 >gi|330508939|ref|YP_004385367.1| CoB--CoM heterodisulfide reductase subunit A [Methanosaeta concilii GP-6] gi|328929747|gb|AEB69549.1| CoB--CoM heterodisulfide reductase subunit A [Methanosaeta concilii GP-6] Length = 811 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 12/64 (18%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + CI CKLC +CP +AI+++S C CG C ACPVD Sbjct: 573 YVDPDLCIKCKLCVDVCPQKAISVKSPAYVD------------EAACKGCGSCAAACPVD 620 Query: 117 AIVE 120 AI Sbjct: 621 AIKM 624 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 23/82 (28%), Gaps = 8/82 (9%) Query: 52 ALRRYPNGEERCIAC-KLCEAICPAQAITIE-------SGPRCHDGTRRTVRYDIDMIKC 103 R C C C +CP + + +D C Sbjct: 232 VHRARYVDPVLCKGCINECADVCPVEVPNEYDFGIGKRKAIYVPYPQAVPLSACVDPKAC 291 Query: 104 IYCGLCQEACPVDAIVEGPNFE 125 I CG C E+CP A+ E Sbjct: 292 IGCGRCVESCPTQAVKLDQVVE 313 >gi|315922949|ref|ZP_07919189.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Bacteroides sp. D2] gi|313696824|gb|EFS33659.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Bacteroides sp. D2] Length = 403 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 11/75 (14%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++C C C +C AI + +ID KC+ CG+C++ CP Sbjct: 11 KQCTGCFACIDVCNKNAI------NIVEHYDGHRYVEIDKSKCVGCGMCEQICP-----I 59 Query: 121 GPNFEFATETRQELY 135 NFE+ + Y Sbjct: 60 VSNFEYQKSEYSDFY 74 >gi|313125962|ref|YP_004036232.1| NADH:ubiquinone oxidoreductase chain i-like protein [Halogeometricum borinquense DSM 11551] gi|312292327|gb|ADQ66787.1| NADH:ubiquinone oxidoreductase chain I-like protein [Halogeometricum borinquense DSM 11551] Length = 114 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 27/82 (32%), Gaps = 2/82 (2%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100 G P + + CI C CP + P + + Sbjct: 29 GPVDPPEKLGIHGTHVAVDFDICIGDGACLEDCPVDVFSWVDTPGHPESEVKVQPAR--E 86 Query: 101 IKCIYCGLCQEACPVDAIVEGP 122 +CI C LC + CPVDAI P Sbjct: 87 DQCIDCMLCVDVCPVDAIDVDP 108 >gi|308273555|emb|CBX30157.1| Pyruvate-flavodoxin oxidoreductase [uncultured Desulfobacterium sp.] Length = 1179 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 31/115 (26%), Gaps = 20/115 (17%) Query: 29 KAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAICPAQ---------- 76 K ++ P S + A+ E CI C C +CP Sbjct: 651 KLPVSVFEPDGIFPVATSQYEKRGVAINVPEWIAENCIQCNQCSFVCPHASILPVLATDD 710 Query: 77 ------AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP--VDAIVEGPN 123 A + R ++ + C CG C + CP A+ Sbjct: 711 ELKNAPASFETKPAVGKELKGYQFRIQVNTLDCQGCGNCADICPSKKKALEMKHI 765 >gi|300854657|ref|YP_003779641.1| NADH dehydrogenase [Clostridium ljungdahlii DSM 13528] gi|300434772|gb|ADK14539.1| NADH dehydrogenase [Clostridium ljungdahlii DSM 13528] Length = 626 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 29/67 (43%), Gaps = 10/67 (14%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 AL +Y E+CI C C +CP AI+ E + ID KCI CG C Sbjct: 567 ALLKYNINSEKCIGCTACTKVCPKGAISGEIKK----------SHVIDKSKCINCGACSS 616 Query: 112 ACPVDAI 118 C AI Sbjct: 617 TCKFSAI 623 Score = 42.0 bits (97), Expect = 0.031, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 9/72 (12%) Query: 70 EAICPAQAITIESGPRCHDG-TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 + + RC G ++Y+I+ KCI C C + CP AI + Sbjct: 544 MKFFWDEYVAHVKDKRCPAGVCTALLKYNINSEKCIGCTACTKVCPKGAI--------SG 595 Query: 129 ETRQELYYDKER 140 E ++ DK + Sbjct: 596 EIKKSHVIDKSK 607 >gi|260888766|ref|ZP_05900029.1| putative 4Fe-4S binding domain protein [Selenomonas sputigena ATCC 35185] gi|330839840|ref|YP_004414420.1| pyridoxamine 5'-phosphate oxidase-related FMN-binding protein [Selenomonas sputigena ATCC 35185] gi|260861519|gb|EEX76019.1| putative 4Fe-4S binding domain protein [Selenomonas sputigena ATCC 35185] gi|329747604|gb|AEC00961.1| pyridoxamine 5'-phosphate oxidase-related FMN-binding protein [Selenomonas sputigena ATCC 35185] Length = 209 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 12/58 (20%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C A+CP Q I Y I C++CGLC E+CPV+AI Sbjct: 156 EDCIGCGTCAAVCPQQCIAEGE------------PYKIAAAHCLHCGLCFESCPVEAI 201 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 11/27 (40%), Positives = 13/27 (48%) Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFA 127 CI CG C CP I EG ++ A Sbjct: 156 EDCIGCGTCAAVCPQQCIAEGEPYKIA 182 >gi|257125909|ref|YP_003164023.1| sulfite reductase, subunit C [Leptotrichia buccalis C-1013-b] gi|257049848|gb|ACV39032.1| sulfite reductase, subunit C [Leptotrichia buccalis C-1013-b] Length = 324 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 8/87 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + G + + E +C++C +CE C + + + Sbjct: 147 CPNDCQKVRMHDFGIIGMAKPELDESKCVSCGMCERKC--------KKLSTGAISYKNYK 198 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGP 122 D +CI CG C CP A P Sbjct: 199 PVRDHQRCIGCGECVLNCPTGAWTRSP 225 >gi|257065212|ref|YP_003144884.1| formate dehydrogenase, alpha subunit, archaeal-type [Slackia heliotrinireducens DSM 20476] gi|256792865|gb|ACV23535.1| formate dehydrogenase, alpha subunit, archaeal-type [Slackia heliotrinireducens DSM 20476] Length = 911 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 32/111 (28%), Gaps = 14/111 (12%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 L+ + F P + + P L PN CI C+ C Sbjct: 119 LQNICRELGVTESAF--------APEKPKARKPILDSNPFLSFDPN---LCIQCQRCVGA 167 Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIK---CIYCGLCQEACPVDAIVE 120 C QA + + K C CG C +ACP A+ Sbjct: 168 CNNQAHNHTLQTGKKGLRTKILAPFGPDWKATTCESCGNCAQACPTGALTL 218 >gi|225572045|ref|ZP_03780909.1| hypothetical protein RUMHYD_00339 [Blautia hydrogenotrophica DSM 10507] gi|225040480|gb|EEG50726.1| hypothetical protein RUMHYD_00339 [Blautia hydrogenotrophica DSM 10507] Length = 623 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 29/68 (42%), Gaps = 10/68 (14%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 ALR++ E C C C CP AIT R Y I+ CI CG C++ Sbjct: 563 ALRQFHINPEFCKGCGKCAKNCPTGAIT----------GARKHPYTINNDLCIKCGNCKD 612 Query: 112 ACPVDAIV 119 C DA+ Sbjct: 613 NCAFDAVY 620 Score = 38.9 bits (89), Expect = 0.26, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 15/40 (37%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 I + ++ I+ C CG C + CP AI Sbjct: 550 HIINKKCRAKVCTALRQFHINPEFCKGCGKCAKNCPTGAI 589 >gi|222444431|ref|ZP_03606946.1| hypothetical protein METSMIALI_00042 [Methanobrevibacter smithii DSM 2375] gi|222433996|gb|EEE41161.1| hypothetical protein METSMIALI_00042 [Methanobrevibacter smithii DSM 2375] Length = 274 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 3/65 (4%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ CI C C C ++ ++ R T +I+ +C+ C LC+E CPV+AI Sbjct: 183 NKKLCIGCGACVQFCENDSVKLD---RTIGPIVHTKNLEINQDECVNCYLCEENCPVEAI 239 Query: 119 VEGPN 123 Sbjct: 240 WLDEE 244 Score = 40.1 bits (92), Expect = 0.12, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 10/63 (15%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 RCI C +C CP AI P + C+ C +C + CPV AI Sbjct: 48 PRCIRCNMCVDQCPVDAI----EPANIFKIAKITH------DCVKCEICVQTCPVSAIKL 97 Query: 121 GPN 123 N Sbjct: 98 IDN 100 Score = 37.0 bits (84), Expect = 0.80, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 11/70 (15%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + ++ C+ C LCE CP +AI ++ ++ KCI C C C Sbjct: 215 KNLEINQDECVNCYLCEENCPVEAIWLDEEKVV-----------LNNDKCIRCINCTSHC 263 Query: 114 PVDAIVEGPN 123 PV A+ Sbjct: 264 PVGALNFVEI 273 Score = 35.1 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 17/31 (54%) Query: 102 KCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 +CI C +C + CPVDAI F+ A T Sbjct: 49 RCIRCNMCVDQCPVDAIEPANIFKIAKITHD 79 >gi|297203645|ref|ZP_06921042.1| formate dehydrogenase, alpha subunit [Streptomyces sviceus ATCC 29083] gi|197717221|gb|EDY61255.1| formate dehydrogenase, alpha subunit [Streptomyces sviceus ATCC 29083] Length = 938 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 25/81 (30%), Gaps = 3/81 (3%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CIAC C C T G +C+ CG C + Sbjct: 159 YFDFDPAKCIACSRCVRACGEVQGTFALTIEGRGFDSKVSPGAGETFMDSECVSCGACVQ 218 Query: 112 ACPVDAIVEGPNFEFATETRQ 132 ACP + E E TR Sbjct: 219 ACPTSTLQERSVVELGMPTRS 239 >gi|170759048|ref|YP_001786345.1| anaerobic sulfite reductase, subunit C [Clostridium botulinum A3 str. Loch Maree] gi|169406037|gb|ACA54448.1| anaerobic sulfite reductase, subunit C [Clostridium botulinum A3 str. Loch Maree] Length = 321 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 26/88 (29%), Gaps = 8/88 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + G + + RC+ C+ C C +A + + Sbjct: 145 CPNDCIKARMHDFGILGMTEPQYDKYRCVGCQACVNNCKKRA--------TGALRFQNFK 196 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPN 123 D KCI CG C CP A Sbjct: 197 VIRDHEKCIGCGECIGKCPTGAWTRSKE 224 >gi|168217465|ref|ZP_02643090.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium perfringens NCTC 8239] gi|182380464|gb|EDT77943.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium perfringens NCTC 8239] Length = 273 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 11/70 (15%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 N CI CKLCE CP++AI +E+ ID KC CG+C C Sbjct: 210 IVNQNCSVGCIGCKLCEKNCPSKAIRVENNLAI-----------IDYEKCTSCGICVSKC 258 Query: 114 PVDAIVEGPN 123 P AI N Sbjct: 259 PKKAINLREN 268 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 5/78 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCIYCGLCQEAC 113 +C+ACK C + CP I I + + + + CI C LC++ C Sbjct: 170 DSSKCVACKACVSACPQNLIDIIKENQKVIVSCNSNDSGKIVNQNCSVGCIGCKLCEKNC 229 Query: 114 PVDAIVEGPNFEFATETR 131 P AI N + Sbjct: 230 PSKAIRVENNLAIIDYEK 247 >gi|94264133|ref|ZP_01287931.1| Ferredoxin:FAD-dependent pyridine nucleotide-disulphide oxidoreductase:4Fe-4S ferredoxin, iron-sulfur binding:FAD dependent oxidoreductase:Molybdopterin oxidoreductase Fe4S4 region [delta proteobacterium MLMS-1] gi|93455469|gb|EAT05663.1| Ferredoxin:FAD-dependent pyridine nucleotide-disulphide oxidoreductase:4Fe-4S ferredoxin, iron-sulfur binding:FAD dependent oxidoreductase:Molybdopterin oxidoreductase Fe4S4 region [delta proteobacterium MLMS-1] Length = 826 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 32/81 (39%), Gaps = 1/81 (1%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 T+PR+ + +CI C C C +A+ I +G G + + M Sbjct: 606 TTPRYARQEEHPTISVDLNKCIYCHKCANSCEYRALEITAGSFDEQGRAQDLSLT-FMEH 664 Query: 103 CIYCGLCQEACPVDAIVEGPN 123 C+ CG C + C A+ + Sbjct: 665 CVSCGKCVDNCSTGALNKKDQ 685 Score = 35.1 bits (79), Expect = 3.3, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 11/96 (11%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKL-----CEAICPAQAITIESGPRCHDGTR 91 P R + + ERC++C C+ A A ++ T Sbjct: 549 PERAIQDFNEVRLGFTEQMAKSEAERCLSCGCTAFDRCDLKEQAIAHGVDPNKTGMGTTP 608 Query: 92 RTVRYDIDM------IKCIYCGLCQEACPVDAIVEG 121 R R + KCIYC C +C A+ Sbjct: 609 RYARQEEHPTISVDLNKCIYCHKCANSCEYRALEIT 644 >gi|51246903|ref|YP_066787.1| electron transfer flavoprotein, alpha subunit [Desulfotalea psychrophila LSv54] gi|50877940|emb|CAG37780.1| probable electron transfer flavoprotein, alpha subunit [Desulfotalea psychrophila LSv54] Length = 436 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 14/69 (20%) Query: 62 RCIACK-LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA--I 118 +CI+C CE+ CP IT+ I+ KCI C C +ACP +A I Sbjct: 18 KCISCGGRCESSCPVACITMSDAGEP----------QINTAKCIGCKKCVKACPGEALEI 67 Query: 119 VEGPNFEFA 127 P E A Sbjct: 68 FFTPE-ELA 75 >gi|146294139|ref|YP_001184563.1| formate dehydrogenase subunit alpha [Shewanella putrefaciens CN-32] gi|145565829|gb|ABP76764.1| formate dehydrogenase, alpha subunit [Shewanella putrefaciens CN-32] Length = 1424 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 22/75 (29%), Gaps = 15/75 (20%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK---------------C 103 RCI+C C C Q+ D+ + C Sbjct: 647 DANRCISCGKCVDACNQQSGHCVIQFAYDSYQALPQTEDLTQERRAPRVGFSASMADSQC 706 Query: 104 IYCGLCQEACPVDAI 118 + CG C + CP A+ Sbjct: 707 VQCGNCVQVCPTGAL 721 Score = 33.9 bits (76), Expect = 6.6, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 4/48 (8%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 +C+ C C +CP A+ R D T I C YCG+ Sbjct: 704 SQCVQCGNCVQVCPTGALVDARDKRQGDKTSLKTASTI----CTYCGV 747 >gi|71653204|ref|XP_815243.1| ribonuclease L inhibitor [Trypanosoma cruzi strain CL Brener] gi|70880285|gb|EAN93392.1| ribonuclease L inhibitor, putative [Trypanosoma cruzi] Length = 647 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 21/54 (38%) Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C G C + +++V I CI CGLC + CP AI Sbjct: 30 CSLECSKCCPVNLQGKLCIEVQKKSVISKISEELCIGCGLCVKKCPYGAIQIIN 83 >gi|325971420|ref|YP_004247611.1| hydrogenase, Fe-only [Spirochaeta sp. Buddy] gi|324026658|gb|ADY13417.1| hydrogenase, Fe-only [Spirochaeta sp. Buddy] Length = 594 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 33/91 (36%), Gaps = 6/91 (6%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTR 91 T +P K +L R PN CI C C +C Q+++ T+ Sbjct: 124 TSRFPRTKKKFEELDVTSASLVRDPN---ACILCNRCVEVCSSMQSVSAIQLVGRGLKTK 180 Query: 92 RTVRYDIDMIK--CIYCGLCQEACPVDAIVE 120 YD + C CG C CP AI E Sbjct: 181 VATFYDQGLGNSVCTNCGQCSLVCPTAAITE 211 >gi|266620820|ref|ZP_06113755.1| putative polyferredoxin [Clostridium hathewayi DSM 13479] gi|288867559|gb|EFC99857.1| putative polyferredoxin [Clostridium hathewayi DSM 13479] Length = 251 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 32/98 (32%), Gaps = 12/98 (12%) Query: 25 RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84 + F + T G + F + + CI+C C ICP I +E+ Sbjct: 151 KAFSRPAVTFQDRMNSGIVNNLFYPVFVHAKKFYAADTCISCGKCAKICPLNNIRMENRK 210 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + C +C C CP +AI G Sbjct: 211 P------------VWGKNCTHCMACICHCPTEAIEYGK 236 >gi|302879566|ref|YP_003848130.1| electron transport complex, RnfABCDGE type, B subunit [Gallionella capsiferriformans ES-2] gi|302582355|gb|ADL56366.1| electron transport complex, RnfABCDGE type, B subunit [Gallionella capsiferriformans ES-2] Length = 182 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 24/65 (36%), Gaps = 10/65 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C LC CP AI + + I +C C LC CPVD I Sbjct: 108 DESTCIGCTLCIQACPVDAIVGAAKQ----------MHTIIAAECTGCELCLAPCPVDCI 157 Query: 119 VEGPN 123 P Sbjct: 158 SMEPI 162 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 14/21 (66%), Positives = 15/21 (71%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C LC +ACPVDAI Sbjct: 107 IDESTCIGCTLCIQACPVDAI 127 >gi|237735737|ref|ZP_04566218.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229381482|gb|EEO31573.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 203 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 23/58 (39%), Positives = 28/58 (48%), Gaps = 12/58 (20%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RCIAC C+ CP Q I + +Y I C++CGLC E CPV AI Sbjct: 154 NRCIACDRCKRECPQQCI------------KSGSKYKIMQDHCLHCGLCYENCPVRAI 199 >gi|158258982|dbj|BAF82035.1| Fe-hydrogenase [Pseudotrichonympha grassii] Length = 550 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 35/123 (28%), Gaps = 18/123 (14%) Query: 3 IFRCNVSFL--FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 +F + + E + + F T P S + ++ + Sbjct: 95 LFDESKKIFVDYSPEILDGKSSTIDVLF----THFRPEHDRGKSVQKTETQSIVFDFS-- 148 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 CI C C C G + +++ CI CG C CP A+ E Sbjct: 149 -LCIKCNCCFRACID---------LQGIGALNENDHTVNVEDCISCGACVTFCPTTAMRE 198 Query: 121 GPN 123 Sbjct: 199 KRE 201 >gi|148642371|ref|YP_001272884.1| polyferredoxin, iron-sulfur binding [Methanobrevibacter smithii ATCC 35061] gi|148551388|gb|ABQ86516.1| polyferredoxin, iron-sulfur binding [Methanobrevibacter smithii ATCC 35061] Length = 347 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 11/122 (9%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E P F + R++ + CI CK C CP AI +E + + Sbjct: 108 ENHLLKPEFNIIPSKRQFIIDDYLCIRCKKCMKQCPVGAIHVEDDGKVV----------V 157 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158 + KCI CG C + CPV+ F + ++EL L + E +R++ Sbjct: 158 NPFKCISCGECLDVCPVNG-AMKGVFVDNIQDQKELIAQVVTFLEKYINNKEEDLRSLKK 216 Query: 159 DS 160 D Sbjct: 217 DR 218 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 31/105 (29%), Gaps = 11/105 (10%) Query: 11 LFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCE 70 ++ +F F T E RFR +E CI C C Sbjct: 6 WYIYDFARK---AWAQGFTNAKTSP---EIVEKPSRFRNFP-----NVIKEYCIGCGACI 54 Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 + CP+ + I+ CI CG C E CP Sbjct: 55 SSCPSPNAIKLVRDEDDETKEGVTYPIINKSACIRCGFCAEVCPT 99 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 5/70 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR-----YDIDMIKCIYCGLCQEAC 113 + CI C C +CP + T+E G + + ID CI C C + C Sbjct: 83 NKSACIRCGFCAEVCPTEPKTLECGENHLLKPEFNIIPSKRQFIIDDYLCIRCKKCMKQC 142 Query: 114 PVDAIVEGPN 123 PV AI + Sbjct: 143 PVGAIHVEDD 152 Score = 36.2 bits (82), Expect = 1.3, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 9/66 (13%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 +R E C C++C CP +AI+ + + + KC+ C +C ++ Sbjct: 256 IRIIDWDSETCKKCQMCIPDCPTKAISFDE---------KNDTIVRNENKCLRCSICYQS 306 Query: 113 CPVDAI 118 CP I Sbjct: 307 CPFSTI 312 >gi|220932466|ref|YP_002509374.1| Glutamate synthase (NADPH) [Halothermothrix orenii H 168] gi|219993776|gb|ACL70379.1| Glutamate synthase (NADPH) [Halothermothrix orenii H 168] Length = 500 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 35/107 (32%), Gaps = 14/107 (13%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 S R + E+CI C+LCE C + + R Sbjct: 1 MSSSHRNPEFII--ERDYEKCINCRLCERQCAYEVHYYDEDQDKMMARNRN--------- 49 Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWE 149 C+ C C CP DA+ + + R+ + E + N + E Sbjct: 50 CVNCHRCVSLCPTDALGIKK---YPLQFRENYNWTSEMINNIYKQAE 93 >gi|116750393|ref|YP_847080.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116750435|ref|YP_847122.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116699457|gb|ABK18645.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Syntrophobacter fumaroxidans MPOB] gi|116699499|gb|ABK18687.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Syntrophobacter fumaroxidans MPOB] Length = 1006 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 7/85 (8%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES---GPRCHDGTRRTVR----YDI 98 F+ A + ERC AC C +CPA AI + R R Y I Sbjct: 95 CFKPTLATQPRFIDLERCTACGQCRQVCPASAINEFNQGIDRREATFMRYPQAIPRGYGI 154 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPN 123 D C+ CGLC++ C A+ Sbjct: 155 DRASCLGCGLCEKVCLAQAVRYDDQ 179 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 22/63 (34%), Gaps = 6/63 (9%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + C C +C ICP A R +I+ C CGLC +C A Sbjct: 935 SNPNVCSGCGVCVNICPFSAPRFMESGRDAGKA------EINPALCKGCGLCAASCRSGA 988 Query: 118 IVE 120 I Sbjct: 989 IRL 991 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 3/35 (8%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 ID+ +C CG C++ CP AI F + R+ Sbjct: 107 IDLERCTACGQCRQVCPASAI---NEFNQGIDRRE 138 >gi|332799384|ref|YP_004460883.1| NADP-dependent oxidoreductase domain-containing protein [Tepidanaerobacter sp. Re1] gi|332697119|gb|AEE91576.1| NADP-dependent oxidoreductase domain protein [Tepidanaerobacter sp. Re1] Length = 315 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 37/124 (29%), Gaps = 25/124 (20%) Query: 2 RIFRCNVSFLFLKEFVGAFF-----LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRY 56 R F +SF +L + F KT ++ E+ S R Sbjct: 211 RAFSYILSFPYLHSVAVGMKSNDEVVANISIFDGKTVDSHIEER--LSSEKRKLLIEDW- 267 Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 C+ C C C A+ + +G ++ CI CG C CP Sbjct: 268 ------CVGCGECVKHCLYNALHVVNG-----------HSTVNPDACILCGYCSGYCPEF 310 Query: 117 AIVE 120 I Sbjct: 311 CIKI 314 >gi|325969912|ref|YP_004246103.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Spirochaeta sp. Buddy] gi|324025150|gb|ADY11909.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Spirochaeta sp. Buddy] Length = 1177 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 29/94 (30%), Gaps = 19/94 (20%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG + E CI C C CP A + R Sbjct: 675 RGVAPFIPHWI-SENCIQCNQCVQSCPHAAIRAKQIDPKDLEGAPETFKTLKSGTKNDRN 733 Query: 94 VRY--DIDMIKCIYCGLCQEACP--VDAIVEGPN 123 +++ I C CG+C E CP V ++ P Sbjct: 734 LQFKIQIYTEDCQGCGVCVETCPSKVKSLELSPI 767 >gi|323141406|ref|ZP_08076297.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT 12067] gi|322414155|gb|EFY04983.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT 12067] Length = 260 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 23/62 (37%), Gaps = 11/62 (17%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C +C C ICP AI+ G D KCI C C ACP A + Sbjct: 186 PTCTSCGACAKICPTDAISNMDGKMATD-----------AAKCILCMACIHACPKQARIL 234 Query: 121 GP 122 P Sbjct: 235 PP 236 >gi|302671638|ref|YP_003831598.1| iron-sulfur cluster-binding protein [Butyrivibrio proteoclasticus B316] gi|302396111|gb|ADL35016.1| iron-sulfur cluster-binding protein [Butyrivibrio proteoclasticus B316] Length = 400 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 24/63 (38%), Positives = 28/63 (44%), Gaps = 7/63 (11%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 CI CK C CPA+AIT+ + ID KCI C CQE CP A+ Sbjct: 333 SECIGCKKCYETCPAKAITMVDSG-------KNKIPQIDRSKCIKCFCCQEFCPKGAMKV 385 Query: 121 GPN 123 N Sbjct: 386 HYN 388 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 9/31 (29%), Positives = 12/31 (38%) Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + + +CI C C E CP AI Sbjct: 324 YNTKPMVRASECIGCKKCYETCPAKAITMVD 354 >gi|301059767|ref|ZP_07200661.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] gi|300446093|gb|EFK09964.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] Length = 274 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 9/61 (14%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C C +C +A+T+++ P C+ CG C CP I G Sbjct: 146 PCSECGACADVCREEAVTLDASPDGPVFDW---------NLCVRCGQCIGVCPTGTIACG 196 Query: 122 P 122 Sbjct: 197 N 197 >gi|298507396|gb|ADI86119.1| iron-sulfur cluster-binding sigma-54-dependent transcriptional regulator, FehydlgC and FeS domain-containing [Geobacter sulfurreducens KN400] Length = 763 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 11/65 (16%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + +E+C C C CP +AI +E +I +CI CG C Sbjct: 1 MEPIITDKEKCRKCYCCVRSCPVKAIKVEK-----------RYTEIIFDRCIGCGNCLSN 49 Query: 113 CPVDA 117 CP A Sbjct: 50 CPQRA 54 Score = 35.1 bits (79), Expect = 3.8, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 12/31 (38%) Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 KC C C +CPV AI + R Sbjct: 9 EKCRKCYCCVRSCPVKAIKVEKRYTEIIFDR 39 >gi|291279648|ref|YP_003496483.1| formate dehydrogenase subunit alpha [Deferribacter desulfuricans SSM1] gi|290754350|dbj|BAI80727.1| formate dehydrogenase, alpha subunit [Deferribacter desulfuricans SSM1] Length = 908 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 28/105 (26%), Gaps = 11/105 (10%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + +YF + E S F + C+ C C + C Sbjct: 100 ISELSKLFKYFGYKSISSRCFSENRIVSNPF--------FSFDNNLCVQCGRCVSACKEL 151 Query: 77 AITIESGPRCHDGTRRTVR---YDIDMIKCIYCGLCQEACPVDAI 118 ++ + C +CG C + CP AI Sbjct: 152 QCRFVWNFAYKGKNQKLTIGADESFEEALCEFCGTCVDFCPTGAI 196 >gi|258513460|ref|YP_003189682.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfotomaculum acetoxidans DSM 771] gi|257777165|gb|ACV61059.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfotomaculum acetoxidans DSM 771] Length = 1174 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 26/85 (30%), Gaps = 19/85 (22%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQA------ITIESGPRCHDGTRR--------- 92 RG + + CI C C +CP A + E+ + Sbjct: 675 RGIAVMVPEWQ-PDNCIQCNQCSFVCPHAAIRPFLLNSEEAAKAPATFITKAAKGKGLEE 733 Query: 93 ---TVRYDIDMIKCIYCGLCQEACP 114 R + + C CG C E CP Sbjct: 734 LGLQYRMQVSTLDCTGCGNCVETCP 758 >gi|226330215|ref|ZP_03805733.1| hypothetical protein PROPEN_04128 [Proteus penneri ATCC 35198] gi|225201010|gb|EEG83364.1| hypothetical protein PROPEN_04128 [Proteus penneri ATCC 35198] Length = 208 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 26/76 (34%), Gaps = 10/76 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ CI C C CP AI + + + C C LC CP D I Sbjct: 113 DEDNCIGCTKCIQACPVDAIVGAT----------RAMHTVIEDLCTGCDLCVPPCPTDCI 162 Query: 119 VEGPNFEFATETRQEL 134 P + + +L Sbjct: 163 TLVPVKVTTSNWKWDL 178 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C C +ACPVDAI Sbjct: 112 IDEDNCIGCTKCIQACPVDAI 132 >gi|193214460|ref|YP_001995659.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [Chloroherpeton thalassium ATCC 35110] gi|193087937|gb|ACF13212.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Chloroherpeton thalassium ATCC 35110] Length = 1200 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 27/100 (27%), Gaps = 24/100 (24%) Query: 58 NGEERCIACKLCEAICPAQ--------------AITIESGPRCHDGTRRTVRYDIDM--I 101 E CI C C +CP A D + + + I + Sbjct: 691 WDPEVCIQCGKCAMVCPHSVIRAKIYDKDILTSAPESFKTIDGRDKNWKDLGFTIQVSVE 750 Query: 102 KCIYCGLCQEACPV--------DAIVEGPNFEFATETRQE 133 C C +C + CP AI P R+ Sbjct: 751 DCTGCSICVDMCPAKNKTETKLKAINMSPVQPIWESEREN 790 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 13/58 (22%) Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIV 157 CI CG C CP I YDK+ L + + +++ R+ Sbjct: 693 PEVCIQCGKCAMVCPHSVIRAK-------------IYDKDILTSAPESFKTIDGRDKN 737 >gi|193213841|ref|YP_001995040.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Chloroherpeton thalassium ATCC 35110] gi|193087318|gb|ACF12593.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chloroherpeton thalassium ATCC 35110] Length = 547 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/97 (15%), Positives = 31/97 (31%), Gaps = 17/97 (17%) Query: 56 YPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTRRTVRYDIDMIKCIYCGL-- 108 + +CI C C C ++ + G + + +C +C Sbjct: 5 FVIDNRKCIGCHACSTACKSENSVPLGVSRTWVKYTEQGAYPNTKRYFQVTRCNHCANPP 64 Query: 109 CQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNG 145 C CPV A+ R++ + ++ + G Sbjct: 65 CVRICPVTAM----------YQREDGIVEFDKNVCIG 91 Score = 41.2 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 27/86 (31%), Gaps = 12/86 (13%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYD 97 + +G + + RC C C ICP A+ Sbjct: 34 RTWVKYTEQGAYPNTKRYFQVTRCNHCANPPCVRICPVTAMYQREDGIVEFDKNV----- 88 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPN 123 CI C C +ACP +AI P+ Sbjct: 89 -----CIGCKACTQACPYNAIHVDPD 109 Score = 40.5 bits (93), Expect = 0.081, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 26/80 (32%), Gaps = 22/80 (27%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG---------LC 109 + CI CK C CP AI ++ KC +C C Sbjct: 85 DKNVCIGCKACTQACPYNAIHVDPD-------------SGTASKCHFCAHRLENGLEPAC 131 Query: 110 QEACPVDAIVEGPNFEFATE 129 CP AIV G + +E Sbjct: 132 VVVCPQHAIVCGDLDDPNSE 151 >gi|39998452|ref|NP_954403.1| sigma-54 dependent transcriptional regulator, Fis family [Geobacter sulfurreducens PCA] gi|39985399|gb|AAR36753.1| sigma-54 dependent transcriptional regulator, Fis family [Geobacter sulfurreducens PCA] Length = 763 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 11/65 (16%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + +E+C C C CP +AI +E +I +CI CG C Sbjct: 1 MEPIITDKEKCRKCYCCVRSCPVKAIKVEK-----------RYTEIIFDRCIGCGNCLSN 49 Query: 113 CPVDA 117 CP A Sbjct: 50 CPQRA 54 Score = 35.1 bits (79), Expect = 3.8, Method: Composition-based stats. Identities = 10/31 (32%), Positives = 12/31 (38%) Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 KC C C +CPV AI + R Sbjct: 9 EKCRKCYCCVRSCPVKAIKVEKRYTEIIFDR 39 >gi|322830647|gb|EFZ33604.1| ribonuclease L inhibitor, putative [Trypanosoma cruzi] Length = 647 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 21/54 (38%) Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C G C + +++V I CI CGLC + CP AI Sbjct: 30 CSLECSKCCPVNLQGKLCIEVQKKSVISKISEELCIGCGLCVKKCPYGAIQIIN 83 >gi|297537625|ref|YP_003673394.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Methylotenera sp. 301] gi|297256972|gb|ADI28817.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Methylotenera sp. 301] Length = 435 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 29/123 (23%), Positives = 39/123 (31%), Gaps = 16/123 (13%) Query: 10 FLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69 L+L F+ L L + E A +C C Sbjct: 7 ILYLAPFL--LVLALYMAHQRTLNRRGRERLSEARESGLTEPASIHPVIDLTKCCGSGAC 64 Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 CP +A+++ +G D CI G C EACPV+AI F TE Sbjct: 65 VKACPEKALSLINGKAVLT----------DPTHCIGHGACLEACPVEAIKLV----FGTE 110 Query: 130 TRQ 132 R Sbjct: 111 KRG 113 >gi|288573617|ref|ZP_06391974.1| putative PAS/PAC sensor protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569358|gb|EFC90915.1| putative PAS/PAC sensor protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 586 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 23/63 (36%), Gaps = 11/63 (17%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C CP +AI IE+G C+ CG C E CPV A Sbjct: 18 NDCQDCYKCVRACPVKAIKIENGHAQEI-----------SDHCVLCGRCVEICPVGAKRI 66 Query: 121 GPN 123 + Sbjct: 67 RDD 69 >gi|254167182|ref|ZP_04874035.1| 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family [Aciduliprofundum boonei T469] gi|197624038|gb|EDY36600.1| 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family [Aciduliprofundum boonei T469] Length = 105 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 7/82 (8%) Query: 49 GEHALRRYPNGEERCIACKLCEAIC-------PAQAITIESGPRCHDGTRRTVRYDIDMI 101 G + + ++CI C +C C T + P + ++ ID Sbjct: 22 GTWRVFKPVINYDKCIRCLICWQFCPEPSILRYDDEETKQKTPAPKEALKKLPVVVIDYD 81 Query: 102 KCIYCGLCQEACPVDAIVEGPN 123 C CG+C CPV AI Sbjct: 82 YCKGCGICYNECPVKAIDFVKE 103 >gi|167746957|ref|ZP_02419084.1| hypothetical protein ANACAC_01669 [Anaerostipes caccae DSM 14662] gi|317471769|ref|ZP_07931108.1| 4Fe-4S binding domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|167653917|gb|EDR98046.1| hypothetical protein ANACAC_01669 [Anaerostipes caccae DSM 14662] gi|316900746|gb|EFV22721.1| 4Fe-4S binding domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 264 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 31/83 (37%), Gaps = 11/83 (13%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P++K + + CI C LC C AIT+E+ Sbjct: 191 VPYDKKHLVQCNSKDKGKDVMSVCKAGCIGCGLCAKECKLGAITVENNIAH--------- 241 Query: 96 YDIDMIKCIYCGLCQEACPVDAI 118 ID KC+ CGLC + CP I Sbjct: 242 --IDYEKCVNCGLCAKKCPKKII 262 Score = 38.5 bits (88), Expect = 0.30, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 5/80 (6%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCH-----DGTRRTVRYDIDMIKCIYCGLCQE 111 +E CI C C ICP I + + H + + CI CGLC + Sbjct: 167 YVDKEACIGCGKCTDICPKGLIELVPYDKKHLVQCNSKDKGKDVMSVCKAGCIGCGLCAK 226 Query: 112 ACPVDAIVEGPNFEFATETR 131 C + AI N + Sbjct: 227 ECKLGAITVENNIAHIDYEK 246 Score = 37.8 bits (86), Expect = 0.58, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 27/73 (36%), Gaps = 17/73 (23%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C +CP AI+I +G +D CI CG C + CP I Sbjct: 144 CMGFGSCAQVCPENAISIVNGIAY-----------VDKEACIGCGKCTDICPKGLI---- 188 Query: 123 NFEFATETRQELY 135 E ++ L Sbjct: 189 --ELVPYDKKHLV 199 >gi|114561242|ref|YP_748755.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Shewanella frigidimarina NCIMB 400] gi|114332535|gb|ABI69917.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Shewanella frigidimarina NCIMB 400] Length = 559 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 28/75 (37%), Gaps = 9/75 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+C C C A CP QA+ C+ CGLC+ ACP + I Sbjct: 425 NSEKCTLCLSCVATCPTQALKDGGDAPA---------LKFVEQDCVQCGLCEAACPENVI 475 Query: 119 VEGPNFEFATETRQE 133 P F RQ+ Sbjct: 476 SLLPQINFNQSARQQ 490 Score = 37.4 bits (85), Expect = 0.65, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 11/53 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C CPA AI+ + +ID C G C ACP A+ Sbjct: 196 CNRCLNFCPADAISSVAHK-----------IEIDPYLCHGAGSCTNACPTGAL 237 >gi|303247436|ref|ZP_07333708.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio fructosovorans JJ] gi|302491132|gb|EFL51024.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio fructosovorans JJ] Length = 266 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 19/62 (30%), Gaps = 11/62 (17%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C C C CP + +E D CI C C + CP A V Sbjct: 192 DECERCGQCVTACPVGCVHLEDSGVVTDK-----------AACIRCCACVKGCPTGARVM 240 Query: 121 GP 122 Sbjct: 241 TD 242 >gi|294141108|ref|YP_003557086.1| electron transport complex protein rnfC [Shewanella violacea DSS12] gi|293327577|dbj|BAJ02308.1| electron transport complex protein rnfC [Shewanella violacea DSS12] Length = 914 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 25/110 (22%), Positives = 37/110 (33%), Gaps = 17/110 (15%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACPVDA 117 C+ C C +CPAQ + P+ + YD ++ CI CG C CP Sbjct: 383 PCVRCGECAQVCPAQLL-----PQQLFWHAKAQEYDKATSFNLADCIECGCCTYVCP-SE 436 Query: 118 IVEGPNFEFAT-------ETRQELYYDKERLLNNGDRWESEIVRNIVTDS 160 I + A E +++ K+R R E E Sbjct: 437 IPLVEYYRIAKSAIKAEAEEKKQAELAKQRFDLRTQRLEDEKRAREEKQK 486 >gi|297568885|ref|YP_003690229.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfurivibrio alkaliphilus AHT2] gi|296924800|gb|ADH85610.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfurivibrio alkaliphilus AHT2] Length = 1181 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 31/109 (28%), Gaps = 26/109 (23%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR- 91 T +EK + + E CI C C CP AI ++ + + Sbjct: 672 TGTTQYEKRNIAVHVPEWL--------PENCIQCGRCSLACPHAAIRMKIVKKADLKGKG 723 Query: 92 ---------------RTVRYDIDMIKCIYCGLCQEACP--VDAIVEGPN 123 + + C C LC E CP A+ N Sbjct: 724 KTFKTAEAVGKQFKGQEATLQVFTEDCCGCTLCVEVCPAKKKALKMIDN 772 >gi|302879567|ref|YP_003848131.1| electron transport complex, RnfABCDGE type, C subunit [Gallionella capsiferriformans ES-2] gi|302582356|gb|ADL56367.1| electron transport complex, RnfABCDGE type, C subunit [Gallionella capsiferriformans ES-2] Length = 555 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 31/93 (33%), Gaps = 2/93 (2%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 CI C C +CP++ + + D + CI CG C CP I Sbjct: 368 PCIRCTRCAEVCPSE-LQPQELYWFSKAKNLDKAEDYHLFDCIECGACSYVCP-SNIPLV 425 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVR 154 + FA +K+ +R E R Sbjct: 426 QYYRFAKSEIWARDANKKSADAARERHEFRESR 458 >gi|258404334|ref|YP_003197076.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfohalobium retbaense DSM 5692] gi|257796561|gb|ACV67498.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfohalobium retbaense DSM 5692] Length = 660 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 29/98 (29%), Gaps = 13/98 (13%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP--------RCHDGTRRTVRYD 97 F + E+C C LC CP++ + Sbjct: 225 NFEATVRRKATYVDWEKCTGCGLCMEKCPSKKAYDYFNEGISTTTAINIPFPQATPKKAT 284 Query: 98 IDMIKCIY-----CGLCQEACPVDAIVEGPNFEFATET 130 ID C CG+C + CP +AI E TE Sbjct: 285 IDADYCRRFTKGKCGVCAKVCPTEAINFEMQDEIVTEK 322 Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 6/61 (9%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RC+ C C CP AI + + ++ C CG+C CP AI Sbjct: 583 RCVGCFKCVNTCPFGAI------QESQDRGGNPKAEVIASVCQGCGICNVTCPQGAIQLQ 636 Query: 122 P 122 Sbjct: 637 H 637 Score = 35.5 bits (80), Expect = 2.3, Method: Composition-based stats. Identities = 8/27 (29%), Positives = 13/27 (48%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPN 123 + + +C+ C C CP AI E + Sbjct: 578 QVQLARCVGCFKCVNTCPFGAIQESQD 604 >gi|225572038|ref|ZP_03780902.1| hypothetical protein RUMHYD_00332 [Blautia hydrogenotrophica DSM 10507] gi|225040473|gb|EEG50719.1| hypothetical protein RUMHYD_00332 [Blautia hydrogenotrophica DSM 10507] Length = 643 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 34/94 (36%), Gaps = 14/94 (14%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 ++F+ + + +K L Y ++C C LC CP A+ Sbjct: 562 HYFRDEYIAHIVDKKCPAGVC----KDLLVYKIDPDKCKGCTLCARTCPNDAVIG----- 612 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + + ID KC+ CG C E C AI Sbjct: 613 -----KVKEPHTIDPNKCVKCGACMEKCRFGAIY 641 >gi|168210757|ref|ZP_02636382.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium perfringens B str. ATCC 3626] gi|170711180|gb|EDT23362.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium perfringens B str. ATCC 3626] Length = 273 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 29/70 (41%), Gaps = 11/70 (15%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 N CI CKLCE C ++AI +E+ ID KC CG+C C Sbjct: 210 IVNQNCSVGCIGCKLCEKNCSSKAIRVENNLAI-----------IDYEKCTSCGICVSKC 258 Query: 114 PVDAIVEGPN 123 P AI N Sbjct: 259 PKKAINLREN 268 >gi|150018760|ref|YP_001311014.1| nitroreductase [Clostridium beijerinckii NCIMB 8052] gi|149905225|gb|ABR36058.1| nitroreductase [Clostridium beijerinckii NCIMB 8052] Length = 271 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 10/60 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C+ C LC +CP+ +++ I CI CG C CP +I Sbjct: 7 NQSTCVKCGLCSNVCPSGVLSMNENGPIA----------IHPDNCISCGHCVAICPSSSI 56 >gi|297184013|gb|ADI20133.1| uncharacterized anaerobic dehydrogenase [uncultured alpha proteobacterium EB080_L06A09] Length = 919 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 5/67 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID----MIKCIYCGLCQEACP 114 + CI C LC C + + G + +D+D C+ CG C +ACP Sbjct: 147 NLDACIQCNLCVRACR-EVQVNDVIGLAGRGHDAKIVFDMDDPMGESSCVACGECVQACP 205 Query: 115 VDAIVEG 121 A++ Sbjct: 206 TGALMPS 212 >gi|303327686|ref|ZP_07358126.1| periplasmic [Fe] hydrogenase, large subunit [Desulfovibrio sp. 3_1_syn3] gi|302862047|gb|EFL84981.1| periplasmic [Fe] hydrogenase, large subunit [Desulfovibrio sp. 3_1_syn3] Length = 418 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 29/83 (34%), Gaps = 10/83 (12%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 +E G+ E+CI C C+ CP+ AI E+G Sbjct: 11 YEPNVPPQGADGDKMF-FVQVDAEKCIGCDTCQEYCPSGAIYGETGAAHEVAY------- 62 Query: 98 IDMIKCIYCGLCQEACPVDAIVE 120 CI CG C CP A+ E Sbjct: 63 --PEACINCGQCLTHCPEFAVYE 83 >gi|302388831|ref|YP_003824652.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Thermosediminibacter oceani DSM 16646] gi|302199459|gb|ADL07029.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Thermosediminibacter oceani DSM 16646] Length = 1206 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 21/67 (31%), Gaps = 3/67 (4%) Query: 59 GEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 +CI C LC +C + + CI CG C CP Sbjct: 611 DPNKCILCGLCVRVCDEVMGITALGFVNRGFDTVIKPEFELPLRDTSCISCGQCVAVCPT 670 Query: 116 DAIVEGP 122 A+ E P Sbjct: 671 GALQEKP 677 >gi|302835808|ref|XP_002949465.1| pyruvate-ferredoxin oxidoreductase [Volvox carteri f. nagariensis] gi|300265292|gb|EFJ49484.1| pyruvate-ferredoxin oxidoreductase [Volvox carteri f. nagariensis] Length = 1301 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 31/112 (27%), Gaps = 18/112 (16%) Query: 29 KAKTTINYPFEKGSTSPRFRGEHAL--RRYPNGEERCIACKLCEAICPAQAITIESGPRC 86 K +I P + A+ + E C C +C +CP AI Sbjct: 763 KLPVSIFSPEGFVPPGTTIIEKRAIASQVPVWKSENCTQCNICAFVCPHAAIRPSLAQPG 822 Query: 87 HDGTRR----------------TVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 R + C C LC ACP +A+ P Sbjct: 823 ELANAPAAFTSIPAKGPGLQGLQYRIQVSPYDCTGCDLCTHACPDNALEAKP 874 >gi|266620818|ref|ZP_06113753.1| nitroreductase family protein [Clostridium hathewayi DSM 13479] gi|288867557|gb|EFC99855.1| nitroreductase family protein [Clostridium hathewayi DSM 13479] Length = 257 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 35/94 (37%), Gaps = 11/94 (11%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + ++C+ C +C C A I I + R I M C+ CG C Sbjct: 1 MVKHQVIIDPDKCVGCGICAKACAAHNIVIGN-----------KRAKIRMDDCVMCGHCT 49 Query: 111 EACPVDAIVEGPNFEFATETRQELYYDKERLLNN 144 CP +A+ E ++++ + +L+ Sbjct: 50 AVCPKNAVTISGYDTEQIEKKEKVRLNPSDVLDV 83 >gi|257439221|ref|ZP_05614976.1| iron-sulfur cluster-binding protein [Faecalibacterium prausnitzii A2-165] gi|257198354|gb|EEU96638.1| iron-sulfur cluster-binding protein [Faecalibacterium prausnitzii A2-165] Length = 294 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 21/87 (24%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L + + +C++C C C V + +CI CG+C A Sbjct: 219 LFQMKVDKSKCVSCGKCARACKMD---------------VDVTKTPNHTECIRCGMCIRA 263 Query: 113 CPVDAIVE------GPNFEFATETRQE 133 CP +A+ G E A R+ Sbjct: 264 CPTNAVCFRYGFGDGKEKENAATLREN 290 >gi|227489231|ref|ZP_03919547.1| possible Fe-S dehydrogenase [Corynebacterium glucuronolyticum ATCC 51867] gi|227090762|gb|EEI26074.1| possible Fe-S dehydrogenase [Corynebacterium glucuronolyticum ATCC 51867] Length = 865 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 21/59 (35%), Gaps = 2/59 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRT--VRYDIDMIKCIYCGLCQEACPV 115 C C C+ +CPA PR R D + C CG C E CPV Sbjct: 286 DAHTCTECNRCQDLCPAWNTGKPLSPRKVITDIRDGLEITDDVLWSCTNCGACVEQCPV 344 >gi|226939217|ref|YP_002794288.1| Formate dehydrogenase, alpha subunit [Laribacter hongkongensis HLHK9] gi|226714141|gb|ACO73279.1| Formate dehydrogenase, alpha subunit [Laribacter hongkongensis HLHK9] Length = 927 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 2/68 (2%) Query: 55 RYPNGEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + RCI C C C + R D+ +C+ CG C EA Sbjct: 159 YFTYDPGRCIVCSRCVRACEEVQGTFALNLLDRGFATRIGFAGPDLMGSECVSCGACVEA 218 Query: 113 CPVDAIVE 120 CP ++VE Sbjct: 219 CPTASLVE 226 >gi|254173419|ref|ZP_04880092.1| ketoisovalerate oxidoreductase subunit VorD [Thermococcus sp. AM4] gi|214032828|gb|EEB73657.1| ketoisovalerate oxidoreductase subunit VorD [Thermococcus sp. AM4] Length = 105 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 32/93 (34%), Gaps = 13/93 (13%) Query: 34 INYPFEKGSTS---PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT 90 YP S + F G+ +++C+ C +C CP AI I Sbjct: 21 EQYPEAPISLATTLSNFTGDWRTFIPVVDDDKCVKCYICWKFCPEPAIYIREDGYIG--- 77 Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 ID C CG+C CP +AI Sbjct: 78 -------IDYDYCKGCGICANECPTNAITMEKE 103 >gi|167753237|ref|ZP_02425364.1| hypothetical protein ALIPUT_01508 [Alistipes putredinis DSM 17216] gi|167659168|gb|EDS03298.1| hypothetical protein ALIPUT_01508 [Alistipes putredinis DSM 17216] Length = 287 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 8/68 (11%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + CI C C +CPA +T ++ P G R ++ CI CG C C Sbjct: 3 VQINIDTASCIRCGKCVKVCPAWIMT-QAKPGDPIGLR-------NIDSCIVCGHCAAVC 54 Query: 114 PVDAIVEG 121 P ++ Sbjct: 55 PTGSVRHS 62 >gi|55376868|ref|YP_134719.1| formate dehydrogenase alpha subunit [Haloarcula marismortui ATCC 43049] gi|55229593|gb|AAV45013.1| formate dehydrogenase alpha subunit [Haloarcula marismortui ATCC 43049] Length = 1103 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 4/68 (5%) Query: 57 PNGEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 +CI C C C + IE ++ + +C+ CG C Sbjct: 207 QIDRNKCILCNRCVDACNDVQVEGVLRIEGHGEDTRIGFQSDAETMHDSECVSCGHCATV 266 Query: 113 CPVDAIVE 120 CP ++ E Sbjct: 267 CPTGSLTE 274 >gi|299135388|ref|ZP_07028578.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Afipia sp. 1NLS2] gi|298589796|gb|EFI50001.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Afipia sp. 1NLS2] Length = 658 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 9/64 (14%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C C ++CP A++ + C+ CGLC+ CP I P Sbjct: 505 CTLCLSCVSVCPTGALSDDPD---------RPMLRFAEDACVQCGLCEATCPEKVIELVP 555 Query: 123 NFEF 126 +F Sbjct: 556 QIDF 559 Score = 42.0 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 19/54 (35%), Gaps = 11/54 (20%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + C C +CP AIT ID C CG C ACP A Sbjct: 266 VGCHRCLDLCPTGAITPNGD-----------HVAIDADICAGCGQCATACPTGA 308 Score = 34.3 bits (77), Expect = 5.2, Method: Composition-based stats. Identities = 8/27 (29%), Positives = 13/27 (48%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPN 123 +I + C C C CP A+ + P+ Sbjct: 499 NIKLDGCTLCLSCVSVCPTGALSDDPD 525 >gi|284007516|emb|CBA73012.1| Electron transport complex protein rnfB [Arsenophonus nasoniae] Length = 204 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 21/67 (31%), Gaps = 10/67 (14%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C C CP AI + + + C C LC CP D Sbjct: 109 FIDEANCIGCTKCIQACPVDAIVGTT----------RALHTVVEDLCTGCDLCVAPCPTD 158 Query: 117 AIVEGPN 123 I P Sbjct: 159 CISLLPI 165 >gi|268324145|emb|CBH37733.1| conserved hypothetical protein, containing CobQ/CobB/MinD/ParA nucleotide binding domain, and 4Fe-4S binding domains [uncultured archaeon] Length = 287 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 10/62 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C CE C AI Y ++ +C CG C CP +A+ Sbjct: 65 DKTLCTECGTCEETCRFNAIASTEE----------SGYAVNPARCEGCGACVFTCPQEAV 114 Query: 119 VE 120 Sbjct: 115 TL 116 >gi|269791962|ref|YP_003316866.1| electron transport complex, RnfABCDGE type, B subunit [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099597|gb|ACZ18584.1| electron transport complex, RnfABCDGE type, B subunit [Thermanaerovibrio acidaminovorans DSM 6589] Length = 269 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 5/70 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEAC 113 E RC+ C LC A CP I + + R ++ + CI CGLC + C Sbjct: 169 DENRCVGCGLCVASCPKGVIELVVQDKRVRVACNSHHRGLDVKNVCQLGCIGCGLCSKVC 228 Query: 114 PVDAIVEGPN 123 P AI N Sbjct: 229 PEGAITMEDN 238 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 11/66 (16%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L + CI C LC +CP AIT+E ID KC CG C E Sbjct: 208 LDVKNVCQLGCIGCGLCSKVCPEGAITMEDNLPV-----------IDQSKCTQCGKCVEK 256 Query: 113 CPVDAI 118 CP +I Sbjct: 257 CPTKSI 262 Score = 38.5 bits (88), Expect = 0.28, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 11/58 (18%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C+ C A+CP AI IE+ ID +C+ CGLC +CP I Sbjct: 144 CLGLGTCVAVCPFDAIHIENSLA-----------RIDENRCVGCGLCVASCPKGVIEL 190 >gi|222053655|ref|YP_002536017.1| Fis family transcriptional regulator [Geobacter sp. FRC-32] gi|221562944|gb|ACM18916.1| sigma54 specific transcriptional regulator, Fis family [Geobacter sp. FRC-32] Length = 754 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 11/62 (17%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E+C C C CP +AI +E +I +CI CG C CP A V Sbjct: 9 EKCRKCYSCVRSCPVKAIKVEK-----------TFTEIIFERCIGCGNCLSNCPQHAKVV 57 Query: 121 GP 122 Sbjct: 58 TD 59 >gi|218260394|ref|ZP_03475733.1| hypothetical protein PRABACTJOHN_01396 [Parabacteroides johnsonii DSM 18315] gi|218224548|gb|EEC97198.1| hypothetical protein PRABACTJOHN_01396 [Parabacteroides johnsonii DSM 18315] Length = 596 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 5/64 (7%) Query: 59 GEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 +CI C+ CE +C A+T + + R DI C YCG C CP Sbjct: 148 NMNKCIMCRRCETMCNNIQTVGALTAVNRGFNAAVSTAFER-DIAGSTCSYCGQCVSVCP 206 Query: 115 VDAI 118 V+A+ Sbjct: 207 VNAL 210 >gi|167746889|ref|ZP_02419016.1| hypothetical protein ANACAC_01601 [Anaerostipes caccae DSM 14662] gi|167653849|gb|EDR97978.1| hypothetical protein ANACAC_01601 [Anaerostipes caccae DSM 14662] Length = 515 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 21/74 (28%), Gaps = 3/74 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---YDIDMIKCIYCGLCQE 111 +CI C C C + D+ C+ CG C+ Sbjct: 91 CIIRDPNKCILCGDCVRTCDEIQGMGILDFAFRGSKMQVTTAFNKDLAQTDCVGCGQCRA 150 Query: 112 ACPVDAIVEGPNFE 125 CP AI + E Sbjct: 151 VCPTGAITIKQDIE 164 >gi|160915265|ref|ZP_02077478.1| hypothetical protein EUBDOL_01273 [Eubacterium dolichum DSM 3991] gi|158433064|gb|EDP11353.1| hypothetical protein EUBDOL_01273 [Eubacterium dolichum DSM 3991] Length = 87 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 30/81 (37%), Gaps = 10/81 (12%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 + F+ + CI C C +CP A+++ + + Sbjct: 15 EKHYVIINVFKKGGIRMPVKVNADTCIGCGACVGVCPVGALSMNADSKSEC--------- 65 Query: 98 IDMIKCIYCGLCQEACPVDAI 118 D CI CG C ACPV+AI Sbjct: 66 -DEGTCIDCGSCISACPVEAI 85 Score = 35.5 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 9/23 (39%), Positives = 12/23 (52%) Query: 98 IDMIKCIYCGLCQEACPVDAIVE 120 ++ CI CG C CPV A+ Sbjct: 35 VNADTCIGCGACVGVCPVGALSM 57 >gi|330823666|ref|YP_004386969.1| formate dehydrogenase subunit alpha [Alicycliphilus denitrificans K601] gi|329309038|gb|AEB83453.1| formate dehydrogenase, alpha subunit [Alicycliphilus denitrificans K601] Length = 953 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 5/60 (8%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACPVDAI 118 CI C C C + + G + +D + C+ CG C +ACP A+ Sbjct: 173 CIQCTRCVRACR-EVQVNDVIGYALRGADAKIAFDLDDPMGESTCVGCGECVQACPTGAL 231 >gi|325958247|ref|YP_004289713.1| pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta [Methanobacterium sp. AL-21] gi|325329679|gb|ADZ08741.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Methanobacterium sp. AL-21] Length = 80 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 25/65 (38%), Gaps = 14/65 (21%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E CI C+ C CP I YDID C CG+C E CPV AI Sbjct: 30 DKETCIDCENCVMFCPEGCID--------------KNYDIDYDYCKGCGICAEECPVKAI 75 Query: 119 VEGPN 123 Sbjct: 76 KMERE 80 >gi|317054762|ref|YP_004103229.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Ruminococcus albus 7] gi|315447031|gb|ADU20595.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Ruminococcus albus 7] Length = 1193 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 21/83 (25%), Gaps = 17/83 (20%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAIT----------------IESGPRCHDGTR 91 RG +G CI C C +CP I + Sbjct: 688 RGIAVDVPAWDG-ANCIQCNFCSYVCPHAVIRPSIMTDDELKKAPKLAQDKAVPVTGMPG 746 Query: 92 RTVRYDIDMIKCIYCGLCQEACP 114 + + C CG C CP Sbjct: 747 YNFVMTMSALDCTGCGSCVNVCP 769 >gi|302337816|ref|YP_003803022.1| hydrogenase large subunit domain protein [Spirochaeta smaragdinae DSM 11293] gi|301635001|gb|ADK80428.1| hydrogenase large subunit domain protein [Spirochaeta smaragdinae DSM 11293] Length = 575 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 11/67 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + C C C CP +AI ++ G + C+YCG C CPV Sbjct: 6 YTEQAACQDCYKCVRECPVKAIEVKDG-----------HAVVVQDLCLYCGHCVTVCPVG 54 Query: 117 AIVEGPN 123 A + Sbjct: 55 AKRMRED 61 >gi|319764059|ref|YP_004127996.1| formate dehydrogenase, alpha subunit [Alicycliphilus denitrificans BC] gi|317118620|gb|ADV01109.1| formate dehydrogenase, alpha subunit [Alicycliphilus denitrificans BC] Length = 953 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 5/60 (8%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACPVDAI 118 CI C C C + + G + +D + C+ CG C +ACP A+ Sbjct: 173 CIQCTRCVRACR-EVQVNDVIGYALRGADAKIAFDLDDPMGESTCVGCGECVQACPTGAL 231 >gi|296134042|ref|YP_003641289.1| NADH dehydrogenase (quinone) [Thermincola sp. JR] gi|296032620|gb|ADG83388.1| NADH dehydrogenase (quinone) [Thermincola potens JR] Length = 595 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 10/68 (14%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 L R E C C LC CP AI + ++ID KC C C Sbjct: 536 KKLSRIRIIPEECKKCGLCARECPVGAIKGKPRE----------THEIDPEKCTKCEACL 585 Query: 111 EACPVDAI 118 + CP AI Sbjct: 586 KKCPFGAI 593 Score = 41.6 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 22/70 (31%), Gaps = 8/70 (11%) Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 + ++ R I +C CGLC CPV AI P Sbjct: 516 YFKDEYMAHVRDKVCPAGVCKKLSRIRIIPEECKKCGLCARECPVGAIKGKP-------- 567 Query: 131 RQELYYDKER 140 R+ D E+ Sbjct: 568 RETHEIDPEK 577 >gi|291561268|emb|CBL40067.1| hydrogenases, Fe-only [butyrate-producing bacterium SS3/4] Length = 577 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 31/99 (31%), Gaps = 7/99 (7%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQA---ITIESGPRCHDGTRRTVRYDIDMI 101 P ++ +CI C C +C I G I Sbjct: 127 PEYQPWDKDFPLIRNSAKCIKCMRCVQVCDKIQGLGIWDVEGTGSRTTVNVAGHKTIREA 186 Query: 102 KCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140 C CG C CPV A+ E + E E + +K++ Sbjct: 187 DCALCGQCITHCPVGALSERDDTEKVWEAIE----NKDK 221 >gi|281423156|ref|ZP_06254069.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Prevotella oris F0302] gi|281402492|gb|EFB33323.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Prevotella oris F0302] Length = 1196 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 24/102 (23%), Positives = 32/102 (31%), Gaps = 16/102 (15%) Query: 28 FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH 87 F T++ ++ G+ + RG A E CI C C CP I Sbjct: 658 FVKHGTVDGTWKNGTAAYEKRGVAAFVPVWK-PENCIQCNKCAYSCPHATIRPFVLDEKE 716 Query: 88 DGTRRTVRYDIDMIK---------------CIYCGLCQEACP 114 G DI K C+ CG C + CP Sbjct: 717 KGDFGDETIDILAPKQLKGMQFRIQVDVLDCLGCGNCADVCP 758 >gi|268325215|emb|CBH38803.1| heterodisulfide reductase subunit A [uncultured archaeon] Length = 728 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 22/66 (33%), Gaps = 9/66 (13%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 EE CI C C +CP A+ ++ ++ C CG C CP Sbjct: 619 QINEEICIGCGTCAEVCPYGALELDE---------VMQVMTVNEAVCKGCGGCNSVCPSG 669 Query: 117 AIVEGP 122 A Sbjct: 670 AATMKH 675 >gi|294955243|ref|XP_002788446.1| Pyruvate-flavodoxin oxidoreductase, putative [Perkinsus marinus ATCC 50983] gi|239903910|gb|EER20242.1| Pyruvate-flavodoxin oxidoreductase, putative [Perkinsus marinus ATCC 50983] Length = 586 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 38/120 (31%), Gaps = 30/120 (25%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAI---------------TIESGPRCHDGTRRTVR 95 AL ++C C +C CP I T +S + Sbjct: 136 VALMIPIVDMDKCTQCNICSMSCPHACIRPFLLSQAEDDAKPSTFDSRKAKGGAEVAGLH 195 Query: 96 YDID--MIKCIYCGLCQEACPVDAIVE----------GPNFEFATE--TRQELYYDKERL 141 Y I + C C C ACP DA+ PN+E+A R +DK L Sbjct: 196 YRIQVSPLDCTGCETCVNACPYDALRMEHLADFEDIEKPNWEYAVSLPDRSSR-FDKTTL 254 >gi|189485525|ref|YP_001956466.1| NAD-dependent Fe-hydrogenase catalytic component [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287484|dbj|BAG14005.1| NAD-dependent Fe-hydrogenase catalytic component [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 667 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 5/69 (7%) Query: 62 RCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 +CI C C C AI + ++ D++ C+YCG C CP A Sbjct: 145 KCILCGNCVRFCDEIQSVGAIGF-ANRGSKSVICPSLGCDLESSGCVYCGQCARVCPTGA 203 Query: 118 IVEGPNFEF 126 I+ + Sbjct: 204 IMPKSEISY 212 >gi|91793219|ref|YP_562870.1| electron transport complex protein RnfB [Shewanella denitrificans OS217] gi|91715221|gb|ABE55147.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella denitrificans OS217] Length = 205 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 24/66 (36%), Gaps = 10/66 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E+ CI C C CP AI + + + C C LC E CPVD Sbjct: 108 YIREDECIGCTKCIQACPVDAILGAGK----------LMHTVIAADCTGCDLCVEPCPVD 157 Query: 117 AIVEGP 122 I P Sbjct: 158 CIDMLP 163 >gi|15894793|ref|NP_348142.1| anaerobic sulfite reduction protein C, reductase [Clostridium acetobutylicum ATCC 824] gi|15024462|gb|AAK79482.1|AE007661_12 Anaerobic sulfite reduction protein C, reductase [Clostridium acetobutylicum ATCC 824] Length = 320 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 23/83 (27%), Gaps = 8/83 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + G + + C++C C +C + + Sbjct: 145 CPNDCAKVRMHDFGIMGMTEPHYESDTCVSCGACVKVC--------KKKSVGALSAVNYK 196 Query: 96 YDIDMIKCIYCGLCQEACPVDAI 118 KCI CG C CP A Sbjct: 197 VVRRGEKCIGCGECVLKCPTGAW 219 >gi|118581974|ref|YP_903224.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Pelobacter propionicus DSM 2379] gi|118504684|gb|ABL01167.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pelobacter propionicus DSM 2379] Length = 367 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 25/83 (30%), Gaps = 17/83 (20%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C C C AI I G ID +KC C C CPV AI Sbjct: 194 CTGCGFCLKSCAHDAIAINDGIAY-----------IDALKCAGCSRCISVCPVRAIQVQW 242 Query: 123 NFEFATETRQELYYDKERLLNNG 145 N +L K G Sbjct: 243 NEA------ADLVMRKMAEYARG 259 >gi|325508931|gb|ADZ20567.1| Anaerobic sulfite reduction protein C, reductase [Clostridium acetobutylicum EA 2018] Length = 320 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/83 (18%), Positives = 23/83 (27%), Gaps = 8/83 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + G + + C++C C +C + + Sbjct: 145 CPNDCAKVRMHDFGIMGMTEPHYESDTCVSCGACVKVC--------KKKSVGALSAVNYK 196 Query: 96 YDIDMIKCIYCGLCQEACPVDAI 118 KCI CG C CP A Sbjct: 197 VVRRGEKCIGCGECVLKCPTGAW 219 >gi|313202859|ref|YP_004041516.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Paludibacter propionicigenes WB4] gi|312442175|gb|ADQ78531.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Paludibacter propionicigenes WB4] Length = 1177 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 31/95 (32%), Gaps = 20/95 (21%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAIT--------IESGPRCHDGTRRTVRYDID 99 RG + N CI C C +CP AI E+ P+ ++ Sbjct: 677 RGVASHVPVWN-SSNCIQCNQCAYVCPHAAIRPFILDLKEQENAPQFEMLKTNGKQFADM 735 Query: 100 MIK-------CIYCGLCQEACPVD----AIVEGPN 123 + C+ C C E CP + A+ P Sbjct: 736 TFRIQVDVLDCMGCNNCAEVCPGNKGNKALTMVPI 770 >gi|310778491|ref|YP_003966824.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Ilyobacter polytropus DSM 2926] gi|309747814|gb|ADO82476.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Ilyobacter polytropus DSM 2926] Length = 587 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 3/67 (4%) Query: 59 GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115 ++CI C+ CE +C Q I S T ++ D+ C +CG C CPV Sbjct: 148 DMDKCIMCRRCETMCNKIQTCNILSAVNRGFETVVAPSHEKDLEDTACTFCGQCVAVCPV 207 Query: 116 DAIVEGP 122 A+ E Sbjct: 208 GALHEKD 214 >gi|306819962|ref|ZP_07453613.1| pyruvate formate-lyase activating enzyme [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551998|gb|EFM39938.1| pyruvate formate-lyase activating enzyme [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 305 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 16/79 (20%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++CI C C +C AI ++ Y +D KC CG C CP A++ Sbjct: 59 DQCIRCGSCFKVCKVGAINLDKE------------YIVDREKCTSCGECVLVCPSSALLM 106 Query: 121 ----GPNFEFATETRQELY 135 E E R++ Sbjct: 107 KGKTMTVEEVIKEARKDSI 125 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 20/71 (28%), Gaps = 8/71 (11%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 G I K C C + + R +CI CG C + C Sbjct: 20 IHDGPGIRTIIFLKGCPLRCRWCSNPESQKMKPELMYR--------SDQCIRCGSCFKVC 71 Query: 114 PVDAIVEGPNF 124 V AI + Sbjct: 72 KVGAINLDKEY 82 >gi|295109742|emb|CBL23695.1| Uncharacterized conserved protein [Ruminococcus obeum A2-162] Length = 379 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 22/62 (35%), Gaps = 6/62 (9%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 ERCI C +C CP R D KCI C CQE CP Sbjct: 321 YIDPERCIRCGICVKSCPV------PDKAVDFRKGRENPPVYDYKKCIRCFCCQEMCPEK 374 Query: 117 AI 118 AI Sbjct: 375 AI 376 Score = 38.5 bits (88), Expect = 0.33, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 17/40 (42%) Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 A + + ID +CI CG+C ++CPV Sbjct: 301 ARSGMWERLAKALNIFQKKPYIDPERCIRCGICVKSCPVP 340 >gi|294494959|ref|YP_003541452.1| cobyrinic acid ac-diamide synthase [Methanohalophilus mahii DSM 5219] gi|292665958|gb|ADE35807.1| Cobyrinic acid ac-diamide synthase [Methanohalophilus mahii DSM 5219] Length = 274 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 20/63 (31%), Gaps = 11/63 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E++C C C C A+ + C CG C CP DAI Sbjct: 62 DEQKCDHCGKCADFCNYNALAALPQKVM-----------VFPDLCHGCGGCSLVCPHDAI 110 Query: 119 VEG 121 E Sbjct: 111 SET 113 >gi|257065152|ref|YP_003144824.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Slackia heliotrinireducens DSM 20476] gi|256792805|gb|ACV23475.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Slackia heliotrinireducens DSM 20476] Length = 597 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 10/66 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L ++ E C C +C CPA AI+ + R + ID CI CG C+EA Sbjct: 535 LTQFAIEPEACTGCGMCMRACPAGAISGD----------RREPHVIDPHLCIACGSCREA 584 Query: 113 CPVDAI 118 C DA+ Sbjct: 585 CHFDAV 590 Score = 42.0 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 8/60 (13%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 I+ + ++ I+ C CG+C ACP AI + + R+ D Sbjct: 521 HIDGKECPAGVCAKLTQFAIEPEACTGCGMCMRACPAGAI--------SGDRREPHVIDP 572 >gi|258406435|ref|YP_003199177.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfohalobium retbaense DSM 5692] gi|257798662|gb|ACV69599.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfohalobium retbaense DSM 5692] Length = 660 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 29/98 (29%), Gaps = 13/98 (13%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP--------RCHDGTRRTVRYD 97 F + E+C C LC CP++ + Sbjct: 225 NFEATVRRKATYVDWEKCTGCGLCMEKCPSKKAYDYFNEGISTTTAINIPFPQATPKKAT 284 Query: 98 IDMIKCIY-----CGLCQEACPVDAIVEGPNFEFATET 130 ID C CG+C + CP +AI E TE Sbjct: 285 IDADYCRRFTKGKCGVCAKVCPTEAINFEMQDEIVTEK 322 Score = 39.3 bits (90), Expect = 0.20, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 6/61 (9%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RC+ C C CP AI + + ++ C CG+C CP AI Sbjct: 583 RCVGCFKCVNTCPFGAI------QESQDRGGNPKAEVIASVCQGCGICNVTCPQGAIQLQ 636 Query: 122 P 122 Sbjct: 637 H 637 Score = 35.5 bits (80), Expect = 2.4, Method: Composition-based stats. Identities = 8/27 (29%), Positives = 13/27 (48%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPN 123 + + +C+ C C CP AI E + Sbjct: 578 QVQLARCVGCFKCVNTCPFGAIQESQD 604 >gi|225572064|ref|ZP_03780928.1| hypothetical protein RUMHYD_00358 [Blautia hydrogenotrophica DSM 10507] gi|225040499|gb|EEG50745.1| hypothetical protein RUMHYD_00358 [Blautia hydrogenotrophica DSM 10507] Length = 584 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 10/63 (15%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 + + C C C CP AI+ E + ID CI CG C+E+C Sbjct: 529 HYEITDNCKGCGACARKCPVGAISGEKKK----------VHSIDPNVCIKCGKCEESCKF 578 Query: 116 DAI 118 DA+ Sbjct: 579 DAV 581 >gi|153855001|ref|ZP_01996214.1| hypothetical protein DORLON_02220 [Dorea longicatena DSM 13814] gi|149752498|gb|EDM62429.1| hypothetical protein DORLON_02220 [Dorea longicatena DSM 13814] Length = 578 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 34/107 (31%), Gaps = 4/107 (3%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93 I PF+ + E L R + +C+ C + + G Sbjct: 119 IEIPFKMEIERQPWNKEFPLIRDSSKCIKCMRCVQVCEKVQSLGVWDVEGTGSRTTINVA 178 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140 I+ C CG C CPV A+ + TE + D ++ Sbjct: 179 GHRTIEEASCALCGQCITHCPVGALRARDD----TEDVWDAIADPDK 221 >gi|121534390|ref|ZP_01666214.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Thermosinus carboxydivorans Nor1] gi|121307160|gb|EAX48078.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Thermosinus carboxydivorans Nor1] Length = 96 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 23/68 (33%), Gaps = 10/68 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C CK C CP + + + C CG+C CPV AI Sbjct: 37 DKGLCTECKTCWIFCPDACVNYSADEGISFNLKY----------CKGCGICSNVCPVGAI 86 Query: 119 VEGPNFEF 126 P +F Sbjct: 87 SRVPELDF 94 >gi|152986422|ref|YP_001345936.1| dihydropyrimidine dehydrogenase [Pseudomonas aeruginosa PA7] gi|150961580|gb|ABR83605.1| probable oxidoreductase [Pseudomonas aeruginosa PA7] Length = 424 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 4/66 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117 ++ CI C C C + + DGT R Y++ +C+ C LCQ CPV + Sbjct: 341 DQDACIGCGRCHIACEDTSHQAIASLPRADGTHR---YEVIDAECVGCNLCQITCPVENC 397 Query: 118 IVEGPN 123 I P Sbjct: 398 IEMVPQ 403 >gi|107099425|ref|ZP_01363343.1| hypothetical protein PaerPA_01000437 [Pseudomonas aeruginosa PACS2] gi|313111935|ref|ZP_07797724.1| putative dihydroorotate dehydrogenase [Pseudomonas aeruginosa 39016] gi|310884226|gb|EFQ42820.1| putative dihydroorotate dehydrogenase [Pseudomonas aeruginosa 39016] Length = 424 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 4/66 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117 ++ CI C C C + + DGT R Y++ +C+ C LCQ CPV + Sbjct: 341 DQDACIGCGRCHIACEDTSHQAIASLPRADGTHR---YEVIDAECVGCNLCQITCPVENC 397 Query: 118 IVEGPN 123 I P Sbjct: 398 IEMVPQ 403 >gi|332798262|ref|YP_004459761.1| cobyrinic acid ac-diamide synthase [Tepidanaerobacter sp. Re1] gi|332695997|gb|AEE90454.1| Cobyrinic acid ac-diamide synthase [Tepidanaerobacter sp. Re1] Length = 281 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 22/74 (29%), Gaps = 11/74 (14%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 + L ++C C +C C A+ + C CG Sbjct: 55 EDVMLAVPTIDYDKCTHCGICVQKCAFNALADIKVKLL-----------VFEELCHGCGG 103 Query: 109 CQEACPVDAIVEGP 122 C CPV AI E Sbjct: 104 CVLLCPVGAIAETD 117 >gi|326796152|ref|YP_004313972.1| electron transport complex, RnfABCDGE type, C subunit [Marinomonas mediterranea MMB-1] gi|326546916|gb|ADZ92136.1| electron transport complex, RnfABCDGE type, C subunit [Marinomonas mediterranea MMB-1] Length = 1029 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 1/54 (1%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + CI C +CE CPA + + ++ CI CG C CP Sbjct: 371 QPCIRCGMCEQACPAS-LLPQQLLWFSKSQEHEKAEHYNLFDCIECGACSYVCP 423 >gi|309355077|emb|CAP39440.2| CBR-ABCE-1 protein [Caenorhabditis briggsae AF16] Length = 612 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 29/83 (34%), Gaps = 1/83 (1%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 KG + LR ++RC K C C G C + I Sbjct: 4 KGPLIKNNETDVPLRIAIVEKDRCKP-KNCGLACKKACPVNRQGKMCIVVEATSTISTIS 62 Query: 100 MIKCIYCGLCQEACPVDAIVEGP 122 I CI CG+C + CP DAI Sbjct: 63 EILCIGCGICVKKCPYDAIKIIN 85 >gi|295107456|emb|CBL04999.1| Nitroreductase [Gordonibacter pamelaeae 7-10-1-b] Length = 265 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 27/77 (35%), Gaps = 13/77 (16%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 ERCI C C A C + +E G G +CI CG C Sbjct: 1 MFMLIEIDAERCIGCGRCVADCVGSNLLVEDGTARVKG------------RCILCGHCVA 48 Query: 112 ACPVDAIVEGPNFEFAT 128 CP A+ P ++ A Sbjct: 49 VCPTAAVSI-PGYDMAD 64 >gi|288817477|ref|YP_003431824.1| cytochrome b/b6 [Hydrogenobacter thermophilus TK-6] gi|288786876|dbj|BAI68623.1| cytochrome b/b6 [Hydrogenobacter thermophilus TK-6] gi|308751084|gb|ADO44567.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Hydrogenobacter thermophilus TK-6] Length = 647 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 7/76 (9%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 P E+C C+ C CP +AIT++ + ++ KC Sbjct: 283 PWLIKGKRNPPAHIDFEKCTGCEQCYIDCPYEAITMKDFEDK-------KKAVLNESKCA 335 Query: 105 YCGLCQEACPVDAIVE 120 CG+C +C V AI Sbjct: 336 GCGICVGSCSVQAIDI 351 Score = 35.1 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 13/35 (37%), Positives = 16/35 (45%), Gaps = 1/35 (2%) Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 +R ID KC C C CP +AI +FE Sbjct: 289 KRNPPAHIDFEKCTGCEQCYIDCPYEAITM-KDFE 322 >gi|260913481|ref|ZP_05919959.1| ferredoxin-type protein NapH [Pasteurella dagmatis ATCC 43325] gi|260632421|gb|EEX50594.1| ferredoxin-type protein NapH [Pasteurella dagmatis ATCC 43325] Length = 291 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 23/77 (29%), Gaps = 5/77 (6%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 LR +C C C +CP R + + CI CG C + Sbjct: 215 ILRIKVENRSKCDNCMDCYNVCP-----EPQVLRAPLHGKNNESPLVLSKDCISCGRCID 269 Query: 112 ACPVDAIVEGPNFEFAT 128 CP + F + Sbjct: 270 VCPEKVFIFTTRFNNSV 286 >gi|296137471|ref|YP_003644713.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thiomonas intermedia K12] gi|295797593|gb|ADG32383.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thiomonas intermedia K12] Length = 311 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 33/96 (34%), Gaps = 10/96 (10%) Query: 33 TINYPFEKGSTSPRFRGEH---ALRRYPNGEERCIA--CKLCEAICPAQAITIESGPRCH 87 T FE + FR L YP+ + + C CE IE P Sbjct: 111 TAACKFENNIPTGVFRTWVPDVELGVYPDTKRAFLPRLCNHCERP-----SCIEVCPAGA 165 Query: 88 DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 R+ +ID C CG C ACP DA P Sbjct: 166 TWQRKDGIVEIDYDLCWGCGACVNACPYDARFINPI 201 >gi|253570623|ref|ZP_04848031.1| H2-dehydrogenase [Bacteroides sp. 1_1_6] gi|251839572|gb|EES67655.1| H2-dehydrogenase [Bacteroides sp. 1_1_6] Length = 387 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 19/55 (34%), Gaps = 6/55 (10%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 C C C +CP I + + + CI CG C++ CP Sbjct: 11 NCSGCNACAEVCPKHCIEMVPDKKGFFYPKVDAV------TCIDCGACEKVCPFQ 59 Score = 37.0 bits (84), Expect = 0.90, Method: Composition-based stats. Identities = 8/22 (36%), Positives = 9/22 (40%) Query: 102 KCIYCGLCQEACPVDAIVEGPN 123 C C C E CP I P+ Sbjct: 11 NCSGCNACAEVCPKHCIEMVPD 32 >gi|225386466|ref|ZP_03756230.1| hypothetical protein CLOSTASPAR_00213 [Clostridium asparagiforme DSM 15981] gi|225047435|gb|EEG57681.1| hypothetical protein CLOSTASPAR_00213 [Clostridium asparagiforme DSM 15981] Length = 293 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 33/94 (35%), Gaps = 14/94 (14%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 KG + G A++ + C+ C C CP +AI E+ Sbjct: 199 EVKGKRPYKEYGGSAMKPAADE--SCVGCGTCAEQCPVKAIPAEAPDTTDR--------- 247 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 +CI C C + CP A P + A E + Sbjct: 248 ---ERCISCMRCIKVCPAGARKLDPAGQLAVEQK 278 >gi|182626227|ref|ZP_02953985.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium perfringens D str. JGS1721] gi|177908491|gb|EDT71024.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium perfringens D str. JGS1721] Length = 273 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 11/70 (15%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 N CI CKLCE CP++AI +E+ ID KC CG+C C Sbjct: 210 IVNQNCSVGCIGCKLCEKNCPSEAIRVENNLAI-----------IDYEKCTSCGICVSKC 258 Query: 114 PVDAIVEGPN 123 P AI N Sbjct: 259 PKKAINLREN 268 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 5/78 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCIYCGLCQEAC 113 +C+ACK C + CP I I + + + + CI C LC++ C Sbjct: 170 DSSKCVACKACISACPQNLIDIIKDDQKVIVSCNSNDSGKIVNQNCSVGCIGCKLCEKNC 229 Query: 114 PVDAIVEGPNFEFATETR 131 P +AI N + Sbjct: 230 PSEAIRVENNLAIIDYEK 247 >gi|160941378|ref|ZP_02088715.1| hypothetical protein CLOBOL_06271 [Clostridium bolteae ATCC BAA-613] gi|158435939|gb|EDP13706.1| hypothetical protein CLOBOL_06271 [Clostridium bolteae ATCC BAA-613] Length = 95 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 26/75 (34%), Gaps = 8/75 (10%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G L R CI C CE CP+ ITI+ ID C CG+ Sbjct: 23 GSWRLERPVVDYTSCIKCGTCERYCPSDIITIDKDAE--------ECVRIDFDYCKGCGV 74 Query: 109 CQEACPVDAIVEGPN 123 C CP D I Sbjct: 75 CANECPKDCIAMVEE 89 >gi|149926238|ref|ZP_01914500.1| ferredoxin [Limnobacter sp. MED105] gi|149825056|gb|EDM84268.1| ferredoxin [Limnobacter sp. MED105] Length = 160 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 26/89 (29%), Gaps = 10/89 (11%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 P + CI C LC CP AI S R + Sbjct: 11 PVDPSCGTTIERHIASIHPQHCIGCTLCIKACPVDAIVGSSKRRHA----------VLAE 60 Query: 102 KCIYCGLCQEACPVDAIVEGPNFEFATET 130 C C LC CPVD I EF+ Sbjct: 61 LCTGCELCIPPCPVDCIDMVFMPEFSAWD 89 >gi|197120163|ref|YP_002140590.1| iron-sulfur cluster-binding sigma-54-dependent transcriptional regulator, FehydlgC/FeS domain-containing protein [Geobacter bemidjiensis Bem] gi|197089523|gb|ACH40794.1| iron-sulfur cluster-binding sigma-54-dependent transcriptional regulator, FehydlgC and FeS domain-containing protein [Geobacter bemidjiensis Bem] Length = 759 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 11/69 (15%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C C C CP +AI +E +I +CI CG C CP A V Sbjct: 9 DHCRKCYSCVRSCPVKAIKVEK-----------SYTEIIAERCIGCGNCMSHCPQHAKVI 57 Query: 121 GPNFEFATE 129 N E Sbjct: 58 ADNVAVTNE 66 >gi|78189686|ref|YP_380024.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Chlorobium chlorochromatii CaD3] gi|78171885|gb|ABB28981.1| Pyruvate:ferredoxin (flavodoxin) oxidoreductase [Chlorobium chlorochromatii CaD3] Length = 1189 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/98 (16%), Positives = 23/98 (23%), Gaps = 24/98 (24%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC----------------EAICPAQ 76 T FEK + + + CI C C E + A Sbjct: 672 TGTSKFEKRNLADAIPVW--------EPDLCIQCSKCSLVCPHAAIRVKVYDAEYLASAP 723 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + + I C C +C CP Sbjct: 724 CTFKHTDAKGGHWEGMKYTIQIAPEDCTGCEVCAHVCP 761 >gi|15898393|ref|NP_342998.1| oxidoreductase [Sulfolobus solfataricus P2] gi|13814806|gb|AAK41788.1| Oxidoreductase [Sulfolobus solfataricus P2] Length = 455 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 37/92 (40%), Gaps = 17/92 (18%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 L Y NG + AC +CE CP AI ++ + +ID KC CGL Sbjct: 109 KPIYLSEYCNGLYK--ACNVCEFSCPYNAIKVD----------KKTGVNIDYTKCTSCGL 156 Query: 109 CQEACPVDAIVE-----GPNFEFATETRQELY 135 C +CPV AI FE A ++ Sbjct: 157 CVASCPVSAIQFPSLSQNSIFELAKVKGEKRI 188 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 23/68 (33%), Gaps = 7/68 (10%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 + L RC C+ C CP AI + D D +KCI C +C Sbjct: 290 PYILFDVSIDNNRCTLCESCVNWCPTSAIMLRRSSGVE-------EIDFDPMKCIGCNIC 342 Query: 110 QEACPVDA 117 CP Sbjct: 343 VNVCPESC 350 >gi|268576198|ref|XP_002643079.1| C. briggsae CBR-ABCE-1 protein [Caenorhabditis briggsae] Length = 610 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 29/83 (34%), Gaps = 1/83 (1%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 KG + LR ++RC K C C G C + I Sbjct: 4 KGPLIKNNETDVPLRIAIVEKDRCKP-KNCGLACKKACPVNRQGKMCIVVEATSTISTIS 62 Query: 100 MIKCIYCGLCQEACPVDAIVEGP 122 I CI CG+C + CP DAI Sbjct: 63 EILCIGCGICVKKCPYDAIKIIN 85 >gi|14591507|ref|NP_143588.1| ferredoxin [Pyrococcus horikoshii OT3] gi|3258181|dbj|BAA30864.1| 168aa long hypothetical ferredoxin [Pyrococcus horikoshii OT3] gi|56403969|dbj|BAD77803.1| dye-linked L-proline dehydrogenase gamma2 subunit [Pyrococcus horikoshii OT3] Length = 168 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 34/131 (25%), Positives = 46/131 (35%), Gaps = 18/131 (13%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERC---IACKLCEAICPAQAITIESGPRCHDGTRR 92 P E S P+ E LR P C I C C+ +CP AI +++ Sbjct: 14 TPEELFSIIPK-PSEKRLRERPVAVPECPQRIPCTPCKEVCPTNAIKMDNPNDIPI---- 68 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEI 152 +D KCI C LC + CP A + R LL +R E I Sbjct: 69 -----VDYEKCIGCSLCVQVCPGLAFFM--IHYVGDKAR---ITLPHELLPLPERGEEVI 118 Query: 153 VRNIVTDSPYR 163 + N + R Sbjct: 119 LLNRKGEEVGR 129 >gi|116747695|ref|YP_844382.1| hypothetical protein Sfum_0246 [Syntrophobacter fumaroxidans MPOB] gi|116696759|gb|ABK15947.1| protein of unknown function DUF362 [Syntrophobacter fumaroxidans MPOB] Length = 396 Score = 45.9 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 27/85 (31%), Gaps = 12/85 (14%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPN-GEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93 P G L + P C AC C CPA AIT Sbjct: 306 MTPLVFGPKFTHKLMRKFLVQRPQADPLLCKACGDCRKYCPAGAITQAGSK--------- 356 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAI 118 + D +CI C C E CP A+ Sbjct: 357 --IEFDYDRCIRCYCCIEVCPHGAL 379 >gi|302035619|ref|YP_003795941.1| putative NADH-quinone oxidoreductase subunit G [Candidatus Nitrospira defluvii] gi|300603683|emb|CBK40014.1| putative NADH-quinone oxidoreductase, subunit G [Candidatus Nitrospira defluvii] Length = 902 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 23/60 (38%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RCIAC C +C + G + V + C +CG C CPV AI Sbjct: 155 NMNRCIACAECINVCKDVLMIDALQFMKKGGFNQVVAKGDQPLACEFCGDCLAVCPVGAI 214 >gi|297538314|ref|YP_003674083.1| cyclic nucleotide-binding protein [Methylotenera sp. 301] gi|297257661|gb|ADI29506.1| cyclic nucleotide-binding protein [Methylotenera sp. 301] Length = 833 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 23/90 (25%), Gaps = 28/90 (31%) Query: 59 GEERCIACKLCEAICPA----------QAITIESGPRCHDGTRRTVRYDIDMIK------ 102 E C+ C CE C A I + R R Sbjct: 656 DESLCVRCNYCEDACADTHGGATRLDRDAGPIFANIRVPTSCRHCEHPHCMKDCPPDAIH 715 Query: 103 ------------CIYCGLCQEACPVDAIVE 120 CI CG CQ+ CP D I Sbjct: 716 RAPHGEVYIDDSCIGCGNCQQNCPYDVIQM 745 Score = 35.1 bits (79), Expect = 3.3, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 26/94 (27%), Gaps = 21/94 (22%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 R H + CI C C+ CP I + + + + I Sbjct: 710 PPDAIHRAPHGEVYIDD---SCIGCGNCQQNCPYDVIQMAVIQDQPERSIWQILLGIQPK 766 Query: 102 ------------KCIYCG------LCQEACPVDA 117 KC C +C ACPV A Sbjct: 767 ALPIVGGSKVAVKCDMCKDIKEGPVCVRACPVGA 800 >gi|288940904|ref|YP_003443144.1| RnfABCDGE type electron transport complex subunit C [Allochromatium vinosum DSM 180] gi|288896276|gb|ADC62112.1| electron transport complex, RnfABCDGE type, C subunit [Allochromatium vinosum DSM 180] Length = 461 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 20/68 (29%), Gaps = 1/68 (1%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 CI C C CP G + ++ +C CG C CP I Sbjct: 378 YPCIKCGECLRACPVSLNPSMLGELAVAREYGVMAEQFNLDQCFECGCCAFVCP-SNIPL 436 Query: 121 GPNFEFAT 128 F A Sbjct: 437 TQYFRIAK 444 >gi|282936126|gb|ADB04320.1| putative NADH:acceptor oxidoreductase [bacterium enrichment culture clone N47] gi|308274032|emb|CBX30631.1| hypothetical protein N47_E41430 [uncultured Desulfobacterium sp.] Length = 840 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 22/81 (27%), Gaps = 5/81 (6%) Query: 56 YPNGEERCIACKLCEAICPA---QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 Y CI C C C + + + C +CG C E Sbjct: 188 YNRNFNLCIGCLRCVRACNSLRENDVLGFVVKDGRVIVGPKKAPMLREADCRFCGACVEV 247 Query: 113 CPVDAIVEGPNFEFATETRQE 133 CP A + R+E Sbjct: 248 CPTGA--LTDKIKITESNREE 266 >gi|266623462|ref|ZP_06116397.1| putative 4Fe-4S binding domain protein [Clostridium hathewayi DSM 13479] gi|288864757|gb|EFC97055.1| putative 4Fe-4S binding domain protein [Clostridium hathewayi DSM 13479] Length = 203 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 24/79 (30%), Positives = 29/79 (36%), Gaps = 12/79 (15%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103 S + G + CI C C CP + I V ID C Sbjct: 136 SFSYGGAKEEVSGYFITDDCIGCGQCTESCPQKCIAP------------GVPCRIDGSHC 183 Query: 104 IYCGLCQEACPVDAIVEGP 122 + CGLCQE CPV A+ E Sbjct: 184 LRCGLCQEVCPVGAVAERN 202 >gi|260889594|ref|ZP_05900857.1| sulfite reductase, subunit C [Leptotrichia hofstadii F0254] gi|260861005|gb|EEX75505.1| sulfite reductase, subunit C [Leptotrichia hofstadii F0254] Length = 324 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 8/87 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + G + + E +C++C +CE C + + + Sbjct: 147 CPNDCQKVRMHDFGIIGMAKPELDESKCVSCGMCERKC--------KKLSTGAISYKNYK 198 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGP 122 D +CI CG C CP A P Sbjct: 199 PVRDHQRCIGCGECVLNCPTGAWTRSP 225 >gi|188586757|ref|YP_001918302.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351444|gb|ACB85714.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 508 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 12/64 (18%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 E +C CK+CE CP A+TIE+ + C+ C C CP Sbjct: 1 MIRVDEVKCKGCKVCEKTCPTNAVTIENKLA------------VINENCVGCNACVRVCP 48 Query: 115 VDAI 118 DA+ Sbjct: 49 FDAM 52 >gi|163744663|ref|ZP_02152023.1| dihydropyrimidine dehydrogenase [Oceanibulbus indolifex HEL-45] gi|161381481|gb|EDQ05890.1| dihydropyrimidine dehydrogenase [Oceanibulbus indolifex HEL-45] Length = 437 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 8/82 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117 ++ CI+C C A C E + + +C+ C LC CPV D Sbjct: 343 DQDLCISCGRCFAAC-------EDTSHQAIAMSEDRTFTVIDEECVACNLCVNVCPVEDC 395 Query: 118 IVEGPNFEFATETRQELYYDKE 139 I P AT+ R + Sbjct: 396 ISMEPLAAGATDLRTGKTVTPD 417 >gi|45357879|ref|NP_987436.1| indolepyruvate oxidoreductase subunit alpha 1 [Methanococcus maripaludis S2] gi|45047439|emb|CAF29872.1| indolepyruvate oxidoreductase subunit alpha 1 [Methanococcus maripaludis S2] Length = 612 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 17/88 (19%) Query: 38 FEKGSTSPRFRGEHA-----LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 G ++ FRG ++Y + +CI CK+C AIT+ Sbjct: 533 EYNGPSAVVFRGNCVSLVKSDKKYVIDKNKCINCKICVERLGCPAITMNDEIPE------ 586 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVE 120 M C CGLC+ CP +A++E Sbjct: 587 ------IMDNCTGCGLCKAVCPANAVIE 608 >gi|328954890|ref|YP_004372223.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Coriobacterium glomerans PW2] gi|328455214|gb|AEB06408.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Coriobacterium glomerans PW2] Length = 425 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 9/72 (12%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G R C C C +CP A + R+ ++ C+ CGL Sbjct: 311 GNVVTRVPECDPASCTMCGECMKVCPTFACDLVGA---------NGRFAVEPTYCLGCGL 361 Query: 109 CQEACPVDAIVE 120 C E C A+ Sbjct: 362 CAEVCEPHALTL 373 >gi|315186240|gb|EFU20001.1| Respiratory-chain NADH dehydrogenase domain 51 kDa subunit [Spirochaeta thermophila DSM 6578] Length = 440 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 23/66 (34%), Gaps = 2/66 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 GEE CI C C +CP G R + CI C LC CP AI Sbjct: 363 GEEPCIHCSRCAQVCPRGLEPWLLHEALGRGDERLLSGGAIEG-CIGCNLCSFVCP-SAI 420 Query: 119 VEGPNF 124 F Sbjct: 421 PLADRF 426 >gi|262037225|ref|ZP_06010708.1| pyruvate-flavodoxin oxidoreductase [Leptotrichia goodfellowii F0264] gi|261748745|gb|EEY36101.1| pyruvate-flavodoxin oxidoreductase [Leptotrichia goodfellowii F0264] Length = 574 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 23/132 (17%), Positives = 34/132 (25%), Gaps = 33/132 (25%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E G+ + RG + CI C C +CP AI I Sbjct: 63 EHGTANYEKRGIAVEVPEWQ-PDMCIQCNQCAYVCPHAAIRPFLIDEKEMAAAPQGMPTI 121 Query: 99 D----------------MIKCIYCGLCQEACPVD---AIVE--------GPNFEFATE-- 129 + C C C + CP AIV E++ Sbjct: 122 KALGRGFDNLQYKIQVSPLDCTGCTACVDVCPAPKGKAIVMKLIESQIERHEVEYSDYLY 181 Query: 130 ---TRQELYYDK 138 + ++ K Sbjct: 182 NEVSYKDHIMGK 193 >gi|255280972|ref|ZP_05345527.1| protein HymB [Bryantella formatexigens DSM 14469] gi|255268420|gb|EET61625.1| protein HymB [Bryantella formatexigens DSM 14469] Length = 626 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 35/89 (39%), Gaps = 12/89 (13%) Query: 33 TINYPFEKGSTSPRFRGE--HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT 90 T +E+ + R + A+RR+ E C C C CP AIT Sbjct: 545 TFRKEYEEHIVDKKCRAKVCQAMRRFVINPEYCKGCGKCAKNCPVGAITGV--------- 595 Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 R Y ID CI C C++ C DAI Sbjct: 596 -RRECYHIDPNICIKCSACKDNCAFDAIY 623 >gi|225390319|ref|ZP_03760043.1| hypothetical protein CLOSTASPAR_04072 [Clostridium asparagiforme DSM 15981] gi|225043643|gb|EEG53889.1| hypothetical protein CLOSTASPAR_04072 [Clostridium asparagiforme DSM 15981] Length = 254 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 12/75 (16%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 +R +A +P ++ C C C A CP AI+ E+ P G KCI Sbjct: 166 PYRAVNAPSAWPAADDACNRCGACAAACPVGAISRET-PNLTSG-----------DKCIN 213 Query: 106 CGLCQEACPVDAIVE 120 C C + CP A Sbjct: 214 CMRCIQVCPRKARSM 228 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 13/24 (54%), Positives = 13/24 (54%), Gaps = 1/24 (4%) Query: 101 IKCIYCGLCQEACPVDAI-VEGPN 123 C CG C ACPV AI E PN Sbjct: 181 DACNRCGACAAACPVGAISRETPN 204 >gi|225016302|ref|ZP_03705494.1| hypothetical protein CLOSTMETH_00205 [Clostridium methylpentosum DSM 5476] gi|224950977|gb|EEG32186.1| hypothetical protein CLOSTMETH_00205 [Clostridium methylpentosum DSM 5476] Length = 1173 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 25/81 (30%), Gaps = 15/81 (18%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQ-----AITIESGPRCHDGT---------RRT 93 RG E CI C C +CP A+T E +G Sbjct: 678 RGVAVDVPTWI-PENCIQCNFCSYVCPHAVIRPAAMTEEEAANVPEGQLTAPMTGMPGMK 736 Query: 94 VRYDIDMIKCIYCGLCQEACP 114 I ++ C CG C CP Sbjct: 737 FAMTISVLDCTGCGSCINVCP 757 >gi|237809074|ref|YP_002893514.1| electron transport complex, RnfABCDGE type, B subunit [Tolumonas auensis DSM 9187] gi|237501335|gb|ACQ93928.1| electron transport complex, RnfABCDGE type, B subunit [Tolumonas auensis DSM 9187] Length = 183 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 24/73 (32%), Gaps = 12/73 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C C C AI G R + I C CG C CP + I Sbjct: 106 DMDGCDGCGRCIKQCSYDAIV---------GATRQLHGVI-ADACTGCGACVAVCPHNGI 155 Query: 119 VEGPNFEFATETR 131 P+ A +R Sbjct: 156 SLYPD--PAFMSR 166 >gi|222444426|ref|ZP_03606941.1| hypothetical protein METSMIALI_00037 [Methanobrevibacter smithii DSM 2375] gi|222433991|gb|EEE41156.1| hypothetical protein METSMIALI_00037 [Methanobrevibacter smithii DSM 2375] Length = 343 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 47/122 (38%), Gaps = 11/122 (9%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E P F + R++ + CI CK C CP AI +E + + Sbjct: 104 ENHLLKPEFNIIPSKRQFIIDDYLCIRCKKCMKQCPVGAIHVEDDGKVV----------V 153 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158 + KCI CG C + CPV+ F + ++EL L + E +R++ Sbjct: 154 NPFKCISCGECLDVCPVNG-AMKGVFVDNIQDQKELIAQVVTFLEKYINNKEEDLRSLKK 212 Query: 159 DS 160 D Sbjct: 213 DR 214 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 25/77 (32%), Gaps = 5/77 (6%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E RFR +E CI C C + CP+ + I Sbjct: 24 EIVEKPSRFRNFP-----NVIKEYCIGCGACISSCPSPNAIKLVRDEDDETKEGITYPII 78 Query: 99 DMIKCIYCGLCQEACPV 115 + CI CG C E CP Sbjct: 79 NKSACIRCGFCAEVCPT 95 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 29/76 (38%), Gaps = 5/76 (6%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR-----YDIDMIKCIYCG 107 + + CI C C +CP + T+E G + + ID CI C Sbjct: 73 ITYPIINKSACIRCGFCAEVCPTEPKTLECGENHLLKPEFNIIPSKRQFIIDDYLCIRCK 132 Query: 108 LCQEACPVDAIVEGPN 123 C + CPV AI + Sbjct: 133 KCMKQCPVGAIHVEDD 148 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 9/66 (13%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 +R E C C++C CP +AI+ + + + KC+ C +C ++ Sbjct: 252 IRIIDWDSETCKKCQMCIPDCPTKAISFDE---------KNDTIVRNENKCLRCSICYQS 302 Query: 113 CPVDAI 118 CP I Sbjct: 303 CPFSTI 308 >gi|213581398|ref|ZP_03363224.1| dihydropyrimidine dehydrogenase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 155 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 6/79 (7%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + +E+C+ C C C G + + + + K Sbjct: 68 IPAEDLDRSYIVYPRINQEKCVGCGRCYISCYDG------GHQAMEWDEHSHTPHCNTEK 121 Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ C LC CPV I G Sbjct: 122 CVGCLLCGHVCPVACIDLG 140 >gi|167856055|ref|ZP_02478798.1| electron transport complex protein RnfB [Haemophilus parasuis 29755] gi|167852804|gb|EDS24075.1| electron transport complex protein RnfB [Haemophilus parasuis 29755] Length = 199 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 24/79 (30%), Gaps = 10/79 (12%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 E + EE CI C C A CP AI + + + Sbjct: 94 DVPETSGEEPVAKVAYIHEELCIGCTKCIAACPVDAIVGTNK----------AMHTVIAD 143 Query: 102 KCIYCGLCQEACPVDAIVE 120 C C LC CP D I Sbjct: 144 FCTGCELCVAPCPTDCIEM 162 Score = 37.0 bits (84), Expect = 0.79, Method: Composition-based stats. Identities = 14/39 (35%), Positives = 14/39 (35%) Query: 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 P I CI C C ACPVDAIV Sbjct: 96 PETSGEEPVAKVAYIHEELCIGCTKCIAACPVDAIVGTN 134 >gi|134299710|ref|YP_001113206.1| NADH dehydrogenase (quinone) [Desulfotomaculum reducens MI-1] gi|134052410|gb|ABO50381.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Desulfotomaculum reducens MI-1] Length = 600 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 26/67 (38%), Gaps = 10/67 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L Y E+CI C +C CP AI E ID+ CI CG C + Sbjct: 542 LLVYTIDREKCIGCGICARSCPVGAIDGEKKQPHS----------IDIKACIKCGNCLQK 591 Query: 113 CPVDAIV 119 C A+ Sbjct: 592 CKFGAVQ 598 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 15/40 (37%), Positives = 19/40 (47%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 I + + Y ID KCI CG+C +CPV AI Sbjct: 528 HIYNKRCPAGVCPNLLVYTIDREKCIGCGICARSCPVGAI 567 >gi|313672136|ref|YP_004050247.1| ferredoxin-dependent glutamate synthase [Calditerrivibrio nitroreducens DSM 19672] gi|312938892|gb|ADR18084.1| ferredoxin-dependent glutamate synthase [Calditerrivibrio nitroreducens DSM 19672] Length = 547 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 32/95 (33%), Gaps = 16/95 (16%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPR---------CHDGTRRTVRYDIDM--- 100 + +RC C C A CP +AI R + I Sbjct: 15 FWQIEYKHDRCTMCGKCVASCPFKAIVPGVEKRRKVVSEDINPNPKVYFQTVPVIKQVVD 74 Query: 101 --IKCIYCGLCQEACPVDAIVEG--PNFEFATETR 131 C CG+C++ CP DAI P+ F + R Sbjct: 75 VNNFCRGCGICEKVCPNDAIRPVRNPDHRFPAKYR 109 >gi|300870402|ref|YP_003785273.1| iron-sulfur cluster-binding protein [Brachyspira pilosicoli 95/1000] gi|300688101|gb|ADK30772.1| iron-sulfur cluster-binding protein [Brachyspira pilosicoli 95/1000] Length = 376 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 29/74 (39%), Gaps = 5/74 (6%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + + + +C+ C +C +CP + + + + + KCI C CQ Sbjct: 308 FIIPKPVIDKNKCVKCGVCVKVCPVTPLALNFDKKG-----KNYPPEYYYDKCITCYCCQ 362 Query: 111 EACPVDAIVEGPNF 124 E CP AI F Sbjct: 363 ELCPHKAIFLKRKF 376 Score = 38.2 bits (87), Expect = 0.40, Method: Composition-based stats. Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 3/42 (7%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFATET-RQELYYDK 138 ID KC+ CG+C + CPV + NF+ + E YYDK Sbjct: 315 IDKNKCVKCGVCVKVCPVTPLAL--NFDKKGKNYPPEYYYDK 354 >gi|268323322|emb|CBH36910.1| heterodisulfide reductase subunit A [uncultured archaeon] Length = 668 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 11/64 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C+ C CEAICP A+++E+G ++ + C CG C+ ACP AI Sbjct: 598 DEGVCVGCGTCEAICPFDALSLEAG-----------VMHVNEVVCKGCGSCRSACPSGAI 646 Query: 119 VEGP 122 Sbjct: 647 TMRH 650 Score = 33.5 bits (75), Expect = 9.3, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 29/92 (31%), Gaps = 17/92 (18%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES---------GPRCHDGTRRTVRY 96 ++ + + E++C C C C + + Y Sbjct: 226 NYKVKIRKKPRYVDEDKCTGCGECANACLLRGRVPNEFDTGLAKRAAIYVPFPQAVPLVY 285 Query: 97 DIDMIKCIY-----CG---LCQEACPVDAIVE 120 +D +CIY CG C EAC DAI Sbjct: 286 TVDADRCIYITKGKCGKSPACIEACSADAIDF 317 >gi|283795361|ref|ZP_06344514.1| putative 4Fe-4S binding domain protein [Clostridium sp. M62/1] gi|291077019|gb|EFE14383.1| putative 4Fe-4S binding domain protein [Clostridium sp. M62/1] gi|295091066|emb|CBK77173.1| hypothetical protein [Clostridium cf. saccharolyticum K10] Length = 262 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 28/85 (32%), Gaps = 12/85 (14%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 AL + CI C +C+ +CP +E + CI C C Sbjct: 169 ALSHMYQITDECIGCGICQKVCPKGCFHLEGQKSIWE-----------PAGCISCMACIH 217 Query: 112 ACPVDAIVEG-PNFEFATETRQELY 135 ACP+ AI P R E Sbjct: 218 ACPMAAIHLTMPEKNPKARYRNENI 242 >gi|212704668|ref|ZP_03312796.1| hypothetical protein DESPIG_02731 [Desulfovibrio piger ATCC 29098] gi|212671902|gb|EEB32385.1| hypothetical protein DESPIG_02731 [Desulfovibrio piger ATCC 29098] Length = 653 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 7/64 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +RC+AC C CP AIT R + + C CG+C CP AI Sbjct: 581 DNKRCVACGKCIRCCPFGAIT-------EVEFRGEKKAQVIETVCQGCGVCTSTCPQGAI 633 Query: 119 VEGP 122 Sbjct: 634 QLSH 637 Score = 42.0 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 29/97 (29%), Gaps = 13/97 (13%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPA----QAITIESGP----RCHDGTRRTVRYD 97 F + R C C C CP+ A +GP + Sbjct: 225 NFTVKIRKRATYVDWSLCTGCGACTEKCPSKKTPDAFNEFTGPTTAINIAFPQAIPKKAV 284 Query: 98 IDMIKCI-----YCGLCQEACPVDAIVEGPNFEFATE 129 I+ C CG+C + CP AI E TE Sbjct: 285 INPEYCRQMTKGKCGVCAKVCPTGAIKYDMQDEVITE 321 >gi|167751856|ref|ZP_02423983.1| hypothetical protein ALIPUT_00098 [Alistipes putredinis DSM 17216] gi|167660097|gb|EDS04227.1| hypothetical protein ALIPUT_00098 [Alistipes putredinis DSM 17216] Length = 305 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 30/86 (34%), Gaps = 11/86 (12%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 +P ++ + + CI C CE +CP AITI++ Sbjct: 193 KWPKQRAVYVACVSKDKGAVVMKACKAGCIGCGKCEKVCPFGAITIQNNLAF-------- 244 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVE 120 ID KC C C CP AI Sbjct: 245 ---IDSWKCKLCRKCVNECPTGAIRL 267 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 8/76 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHD--------GTRRTVRYDIDMIKCIYCGLCQ 110 ++C AC C CP I + + V CI CG C+ Sbjct: 169 DFDKCTACGACVKACPKSIIELRKKWPKQRAVYVACVSKDKGAVVMKACKAGCIGCGKCE 228 Query: 111 EACPVDAIVEGPNFEF 126 + CP AI N F Sbjct: 229 KVCPFGAITIQNNLAF 244 Score = 37.0 bits (84), Expect = 0.95, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 22/64 (34%), Gaps = 9/64 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C +C AI I R ++D KC CG C +ACP I Sbjct: 138 CTYGCLGYGDCVTVCNFDAIAINPETRLP---------EVDFDKCTACGACVKACPKSII 188 Query: 119 VEGP 122 Sbjct: 189 ELRK 192 >gi|159905811|ref|YP_001549473.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanococcus maripaludis C6] gi|159887304|gb|ABX02241.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus maripaludis C6] Length = 352 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 33/71 (46%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R L ++ C+ C +C CPA+AI + +D+ C+YC Sbjct: 139 RKSLVLGEITIKKDACVLCGICAEYCPAEAIELIPNEMNALSLNPIADIRVDLDACVYCK 198 Query: 108 LCQEACPVDAI 118 +C++ACP +AI Sbjct: 199 VCEKACPHNAI 209 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 24/95 (25%), Positives = 37/95 (38%), Gaps = 8/95 (8%) Query: 36 YPFEKGSTSPRFRGEHALRRYPN-------GEERCIACKLCEAICPAQAITIESGPRCHD 88 PF+ S + + +YP + +C+ C+ CE +CP Q Sbjct: 81 CPFDAVKLSINDKPITEMPQYPKIKRGIELNQSKCVLCEQCELVCP-QCAIDVEREVPER 139 Query: 89 GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + I C+ CG+C E CP +AI PN Sbjct: 140 KSLVLGEITIKKDACVLCGICAEYCPAEAIELIPN 174 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 34/89 (38%), Gaps = 5/89 (5%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 R R + C+ C +C ICP AI + G + DI KC+ Sbjct: 14 EISRSGVEKRVLKWDDCTCVGCGICSEICPTSAIEMGPLGAIFKGDIDAPKLDIS-EKCV 72 Query: 105 YCGLCQEACPVDA----IVEGPNFEFATE 129 CG+C ACP DA I + P E Sbjct: 73 LCGMCACACPFDAVKLSINDKPITEMPQY 101 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 26/101 (25%), Positives = 35/101 (34%), Gaps = 11/101 (10%) Query: 36 YPFEKGSTSPRFRGEHALRRYPN---GEERCIACKLCEAICPAQAITIE--------SGP 84 P E P +L + + C+ CK+CE CP AI Sbjct: 164 CPAEAIELIPNEMNALSLNPIADIRVDLDACVYCKVCEKACPHNAIEAICYKCPLASKIK 223 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 + + +ID C+ CG C CP DAI FE Sbjct: 224 KPELYKEIKGQTNIDKDLCVSCGWCANICPADAITVEKPFE 264 Score = 40.9 bits (94), Expect = 0.064, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 8/83 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + + F GE + E C AC C ++CP A+ PR + Sbjct: 252 CPADAITVEKPFEGELII-----DEPACNACGACISVCPCNALVF---PRPVKQGDKVPN 303 Query: 96 YDIDMIKCIYCGLCQEACPVDAI 118 ++ CI CG C +CPVDA+ Sbjct: 304 VVVNQDVCILCGACTHSCPVDAL 326 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 8/64 (12%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 ++ C++C C ICPA AIT+E ID C CG C CP + Sbjct: 236 NIDKDLCVSCGWCANICPADAITVEKPFEGEL--------IIDEPACNACGACISVCPCN 287 Query: 117 AIVE 120 A+V Sbjct: 288 ALVF 291 Score = 39.3 bits (90), Expect = 0.20, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 5/84 (5%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC----HDGTRRTV 94 E G F+G+ + + E+C+ C +C CP A+ + + + Sbjct: 48 EMGPLGAIFKGDIDAPKL-DISEKCVLCGMCACACPFDAVKLSINDKPITEMPQYPKIKR 106 Query: 95 RYDIDMIKCIYCGLCQEACPVDAI 118 +++ KC+ C C+ CP AI Sbjct: 107 GIELNQSKCVLCEQCELVCPQCAI 130 >gi|294678804|ref|YP_003579419.1| electron transport complex protein RnfB [Rhodobacter capsulatus SB 1003] gi|17380288|sp|Q07394|RNFB_RHOCA RecName: Full=Electron transport complex protein rnfB; AltName: Full=Nitrogen fixation protein rnfB gi|216928|dbj|BAA02787.1| ORFU3 product, potential iron-sulfur protein [Rhodobacter capsulatus] gi|435526|emb|CAA51400.1| rnfB [Rhodobacter capsulatus] gi|1905809|emb|CAA72669.1| RnfB protein [Rhodobacter capsulatus] gi|294477624|gb|ADE87012.1| electron transport complex protein RnfB [Rhodobacter capsulatus SB 1003] gi|742356|prf||2009377C rnfB protein Length = 187 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 10/58 (17%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C+ C CP AI + + + M CI C C E CP +AI Sbjct: 110 DHCTGCQKCFKRCPTDAIVGGAKQ----------IHTVVMDACIGCDACIEVCPTEAI 157 >gi|325972119|ref|YP_004248310.1| Fe-S cluster domain protein [Spirochaeta sp. Buddy] gi|324027357|gb|ADY14116.1| Fe-S cluster domain protein [Spirochaeta sp. Buddy] Length = 445 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 23/61 (37%), Gaps = 11/61 (18%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C C CP QAI I G ID CI CG C CP +AI Sbjct: 17 CKGCTHCMKRCPTQAIRIAKGKA-----------RIDNDLCIECGQCMAVCPNNAIAIEQ 65 Query: 123 N 123 + Sbjct: 66 D 66 >gi|319779888|ref|YP_004139364.1| formate dehydrogenase subunit alpha [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317165776|gb|ADV09314.1| formate dehydrogenase, alpha subunit [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 970 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 24/69 (34%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T G + +C+ CG C + Sbjct: 182 YFTYDASQCIVCSRCVRACEEVQGTFALTIEGRGFESRVSAGMHEAFIDSECVSCGACVQ 241 Query: 112 ACPVDAIVE 120 ACP DA+ E Sbjct: 242 ACPTDALRE 250 >gi|319794266|ref|YP_004155906.1| formate dehydrogenase, alpha subunit [Variovorax paradoxus EPS] gi|315596729|gb|ADU37795.1| formate dehydrogenase, alpha subunit [Variovorax paradoxus EPS] Length = 957 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 5/65 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114 + CI C C C + + G + +D + C+ CG C +ACP Sbjct: 160 NLDACIQCNRCVRACREE-QVNDVIGYAFRGHDSAIVFDLQDGMGDSTCVACGECVQACP 218 Query: 115 VDAIV 119 A++ Sbjct: 219 TGALM 223 >gi|261601245|gb|ACX90848.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus solfataricus 98/2] Length = 398 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 5/78 (6%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 +R + + IAC C+ Q + + G R I KCI Sbjct: 32 NWRSLIVMTHGESKTALSIACNHCDNPTCMQVCPANAIEKNEMGIVR-----IRDDKCIG 86 Query: 106 CGLCQEACPVDAIVEGPN 123 CG C ACP +A+ Sbjct: 87 CGFCTWACPYEALKFNNE 104 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 4/91 (4%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 + P ++ + +++CI C C CP +A+ + Sbjct: 54 HCDNPTCMQVCPANAIEKNEMGIVRIRDDKCIGCGFCTWACPYEALKFNNEGVMSKCHFC 113 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 R + K I C EACP A+ G Sbjct: 114 YDR--LAEGKGI--PYCVEACPTGALAFGWI 140 >gi|256828296|ref|YP_003157024.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfomicrobium baculatum DSM 4028] gi|256577472|gb|ACU88608.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfomicrobium baculatum DSM 4028] Length = 144 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 9/62 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 EE C+ C LC A+CP++A+ + R D D KC C +C CPV A+ Sbjct: 85 NEESCMHCGLCTALCPSKALHLNVETRLV---------DFDQDKCTACNMCVTVCPVRAM 135 Query: 119 VE 120 + Sbjct: 136 IM 137 >gi|291286169|ref|YP_003502985.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio acetiphilus DSM 12809] gi|290883329|gb|ADD67029.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio acetiphilus DSM 12809] Length = 259 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 30/88 (34%), Gaps = 12/88 (13%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 K +N P G+ + +E+CI C C+ CP A+ I Sbjct: 155 KKGDMNIPDVPGNVPYKELALPKGATPKTDDEKCIICGACKKACPTGAMIIAE------- 207 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + + CI C C + CP A Sbjct: 208 -----KVTSNPDLCIMCMACAKVCPRKA 230 Score = 33.9 bits (76), Expect = 6.6, Method: Composition-based stats. Identities = 10/20 (50%), Positives = 14/20 (70%) Query: 101 IKCIYCGLCQEACPVDAIVE 120 KCI CG C++ACP A++ Sbjct: 186 EKCIICGACKKACPTGAMII 205 >gi|225568281|ref|ZP_03777306.1| hypothetical protein CLOHYLEM_04355 [Clostridium hylemonae DSM 15053] gi|225163000|gb|EEG75619.1| hypothetical protein CLOHYLEM_04355 [Clostridium hylemonae DSM 15053] Length = 88 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 11/65 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E CIAC C CP +I G + I C CG+C CP +AI Sbjct: 32 DQETCIACGTCLLYCPVNSIRKTDG-----------TFTICYDYCKGCGICAHECPKNAI 80 Query: 119 VEGPN 123 P Sbjct: 81 TMIPE 85 >gi|298491065|ref|YP_003721242.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein ['Nostoc azollae' 0708] gi|298232983|gb|ADI64119.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein ['Nostoc azollae' 0708] Length = 394 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 33/98 (33%), Gaps = 11/98 (11%) Query: 43 TSPRFRGEHALRRYPNGEERC-IAC-KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100 S + R+ C + C + CE ICPAQAI + G I Sbjct: 87 VSLNDGEDPHFRKAEFNASSCPVDCPRPCEKICPAQAIVFNNIKDSFSG--------IIA 138 Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 KC CG C CP + I + E L K Sbjct: 139 EKCYGCGRCIPVCPYEMINTTS-YISTPEAIAPLIMSK 175 >gi|254482990|ref|ZP_05096225.1| formate dehydrogenase, alpha subunit [marine gamma proteobacterium HTCC2148] gi|214036675|gb|EEB77347.1| formate dehydrogenase, alpha subunit [marine gamma proteobacterium HTCC2148] Length = 949 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 2/73 (2%) Query: 55 RYPNGEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + +CI C C C + R D D +C+ CG C +A Sbjct: 161 YFTFDPSKCIVCSRCVRACEETQGTFALTIEGRGFDSKVSAGGVDFLNSECVSCGACVDA 220 Query: 113 CPVDAIVEGPNFE 125 CP + E E Sbjct: 221 CPTATLTENSIIE 233 >gi|134299709|ref|YP_001113205.1| molybdopterin oxidoreductase Fe4S4 region [Desulfotomaculum reducens MI-1] gi|134052409|gb|ABO50380.1| molybdopterin oxidoreductase Fe4S4 region [Desulfotomaculum reducens MI-1] Length = 351 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 3/65 (4%) Query: 59 GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115 +CI C C C Q + T+ T D+ + K C+YCG C CPV Sbjct: 144 DMNKCILCGKCIRACDEIQGNHVLDFAYRGFHTKITTAMDLPLSKSECVYCGNCVAVCPV 203 Query: 116 DAIVE 120 A+ E Sbjct: 204 GALQE 208 >gi|309388710|gb|ADO76590.1| dihydroorotate oxidase B, catalytic subunit [Halanaerobium praevalens DSM 2228] Length = 411 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 6/63 (9%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L EE CI C C C G + + + D+D +C+ C LCQ+ Sbjct: 334 LILPEFDEELCIGCGRCYISCYDG------GHQALEWDSENRKPDLDEDQCVGCHLCQQV 387 Query: 113 CPV 115 CPV Sbjct: 388 CPV 390 >gi|309776546|ref|ZP_07671526.1| nitroreductase family protein fused to ferredoxin domain protein [Erysipelotrichaceae bacterium 3_1_53] gi|308915647|gb|EFP61407.1| nitroreductase family protein fused to ferredoxin domain protein [Erysipelotrichaceae bacterium 3_1_53] Length = 257 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 33/96 (34%), Gaps = 12/96 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI C LC CPA I ++ + CI C C CP A+ Sbjct: 9 DSKACIGCGLCVTDCPASNIVLQDKKAS-----------VIEDTCIMCSHCVAICPKHAV 57 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESEIVR 154 E + E L D + +L R+ I + Sbjct: 58 SITGFPEESVEKSTMLRLDPQEVLEV-IRFRRTIRQ 92 Score = 34.7 bits (78), Expect = 4.9, Method: Composition-based stats. Identities = 12/25 (48%), Positives = 12/25 (48%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 ID CI CGLC CP IV Sbjct: 8 IDSKACIGCGLCVTDCPASNIVLQD 32 >gi|297183931|gb|ADI20052.1| hypothetical protein [uncultured alpha proteobacterium EB080_L11F12] Length = 919 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 5/65 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID----MIKCIYCGLCQEACP 114 + CI C LC C + + G + +D+D C+ CG C +ACP Sbjct: 147 NLDACIQCNLCVRACR-EVQVNDVIGLAGRGHDAKIVFDMDDPMGESSCVACGECVQACP 205 Query: 115 VDAIV 119 A++ Sbjct: 206 TGALM 210 >gi|296109071|ref|YP_003616020.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus infernus ME] gi|295433885|gb|ADG13056.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus infernus ME] Length = 392 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 36/105 (34%), Gaps = 16/105 (15%) Query: 29 KAKTTINYPFEKGSTSPRFRGEHALRRYP---------------NGEERCIACKLCEAIC 73 K K I P E + G + +CI C +C C Sbjct: 122 KPKKKIEVPKEPIVVTDNCVGCKICIPECPVNAITFNEETNKVEIDKNKCIYCSICAQTC 181 Query: 74 PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 P AI +G ++ + ++ C++C LC E CP + I Sbjct: 182 PWNAIY-VAGKIPKKRRKKVKSFKVNEDSCVFCKLCVEICPGNMI 225 Score = 40.9 bits (94), Expect = 0.067, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 3/61 (4%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 CI C C CP A+ + + + R + C CG C E CP+ + Sbjct: 304 RMCIVCGACTVACPTGALKL---GKIEHNGKEYNRIEYSPYLCDKCGKCVEVCPMKTLRL 360 Query: 121 G 121 Sbjct: 361 T 361 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 25/75 (33%), Gaps = 3/75 (4%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 N CI C C CP A++ E+ + + + KC CG C E C Sbjct: 25 IDIDNNFNTCILCFRCVEACPTGALSKET---LELNGKTLEKINYLPHKCKKCGTCAEVC 81 Query: 114 PVDAIVEGPNFEFAT 128 F ++ Sbjct: 82 STGIKKVDDQFPYSK 96 Score = 38.5 bits (88), Expect = 0.27, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 1/83 (1%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESG-PRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 ++P + CI C C ICP I++ + + C+ C +C C Sbjct: 91 QFPYSKGHCILCLKCVDICPIDIISLPGVIEKPKKKIEVPKEPIVVTDNCVGCKICIPEC 150 Query: 114 PVDAIVEGPNFEFATETRQELYY 136 PV+AI + + Y Sbjct: 151 PVNAITFNEETNKVEIDKNKCIY 173 >gi|269122188|ref|YP_003310365.1| NADH dehydrogenase (quinone) [Sebaldella termitidis ATCC 33386] gi|268616066|gb|ACZ10434.1| NADH dehydrogenase (quinone) [Sebaldella termitidis ATCC 33386] Length = 614 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 26/60 (43%), Gaps = 10/60 (16%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 +CI C LC ICP IT R + ID KCI CG C EAC AI Sbjct: 563 NNKCIGCTLCARICPESCITGSPKQR----------HYIDAEKCIKCGSCYEACKFHAIN 612 Score = 37.8 bits (86), Expect = 0.47, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 9/81 (11%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 E + + ++Y I+ KCI C LC CP I P Sbjct: 534 EKFWDEYVAHVRDKKCPSGQCKALIKYVIN-NKCIGCTLCARICPESCITGSP------- 585 Query: 130 TRQELYYDKERLLNNGDRWES 150 +Q Y D E+ + G +E+ Sbjct: 586 -KQRHYIDAEKCIKCGSCYEA 605 >gi|254446706|ref|ZP_05060181.1| electron transport complex, RnfABCDGE type, C subunit subfamily [Verrucomicrobiae bacterium DG1235] gi|198256131|gb|EDY80440.1| electron transport complex, RnfABCDGE type, C subunit subfamily [Verrucomicrobiae bacterium DG1235] Length = 456 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 2/73 (2%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 CI+C C CP + G + ++ + C CG C CP +I Sbjct: 380 HPCISCGACVEACPMHLNPCQLGRLAYKSQYDEMQSSFHLNDCFECGSCSYVCP-SSIPL 438 Query: 121 GPNFEFATE-TRQ 132 F A R+ Sbjct: 439 VQYFRIAKSANRE 451 >gi|169830372|ref|YP_001716354.1| hydrogenase, Fe-only [Candidatus Desulforudis audaxviator MP104C] gi|169637216|gb|ACA58722.1| hydrogenase, Fe-only [Candidatus Desulforudis audaxviator MP104C] Length = 523 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 24/75 (32%), Gaps = 10/75 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +C C C +C +D I CI CG C CP AI Sbjct: 79 DHRKCNLCGQCLDVCR----------NTQSVVGYYDLPLVDEIICINCGQCALVCPTGAI 128 Query: 119 VEGPNFEFATETRQE 133 E + E + ++ Sbjct: 129 SERDDTEKVWQALED 143 >gi|149912039|ref|ZP_01900632.1| Electron transport complex protein rnfB [Moritella sp. PE36] gi|149804900|gb|EDM64935.1| Electron transport complex protein rnfB [Moritella sp. PE36] Length = 182 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 27/84 (32%), Gaps = 10/84 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E + + EE CI C C CP AI + + + Sbjct: 91 EVKPIAEQEHDASIKMVARIIEEDCIGCTKCIQACPVDAIAGAT----------RAMHTV 140 Query: 99 DMIKCIYCGLCQEACPVDAIVEGP 122 + C C LC CP D IV P Sbjct: 141 IVDSCTGCKLCVAPCPTDCIVMEP 164 >gi|158520578|ref|YP_001528448.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfococcus oleovorans Hxd3] gi|158509404|gb|ABW66371.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus oleovorans Hxd3] Length = 298 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 22/68 (32%), Gaps = 10/68 (14%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + C AC C + C AIT + C+ CGLC E CP Sbjct: 224 DHDPALCTACGTCISGCMFDAITADENGAPVYNR----------DACMGCGLCVEHCPRQ 273 Query: 117 AIVEGPNF 124 A F Sbjct: 274 ARSLNKEF 281 >gi|114769565|ref|ZP_01447175.1| formate dehydrogenase, alpha subunit [alpha proteobacterium HTCC2255] gi|114549270|gb|EAU52152.1| formate dehydrogenase, alpha subunit [alpha proteobacterium HTCC2255] Length = 919 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 5/65 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID----MIKCIYCGLCQEACP 114 + CI C LC C + + G + +D+D C+ CG C +ACP Sbjct: 147 NLDACIQCNLCVRACR-EVQVNDVIGLAGRGHDAKIVFDMDDPMGESSCVACGECVQACP 205 Query: 115 VDAIV 119 A++ Sbjct: 206 TGALM 210 >gi|11498973|ref|NP_070206.1| heterodisulfide reductase, subunit A (hdrA-2) [Archaeoglobus fulgidus DSM 4304] gi|2649195|gb|AAB89867.1| heterodisulfide reductase, subunit A (hdrA-2) [Archaeoglobus fulgidus DSM 4304] Length = 659 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 34/75 (45%), Gaps = 18/75 (24%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ C C +C + CP +AI+ R ++D +C CG+C CP +A+ Sbjct: 594 DEKLCTGCGICASACPYEAIS------------VNGRAEVDTRRCKGCGICSSVCPANAV 641 Query: 119 VEGPNFEFATETRQE 133 + A TR++ Sbjct: 642 ------DLAGFTREQ 650 Score = 40.9 bits (94), Expect = 0.065, Method: Composition-based stats. Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%) Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 R + +D KCI CG C EACP A+ E F R+ +Y Sbjct: 229 RKKQTYVDWDKCIGCGACVEACPPRAVTE-DEFNEGLTKRRAMYI 272 Score = 38.2 bits (87), Expect = 0.35, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 36/119 (30%), Gaps = 27/119 (22%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES---------GPRCHD 88 E + F+ + ++ ++CI C C CP +A+T + Sbjct: 215 EEVKGSVGNFQVKIRKKQTYVDWDKCIGCGACVEACPPRAVTEDEFNEGLTKRRAMYIAS 274 Query: 89 GTRRTVRYDIDMIKCIYCGL------------------CQEACPVDAIVEGPNFEFATE 129 + D C+ CG C++ACP AI + E Sbjct: 275 PYAIPRKAVHDPKSCVNCGKKTLGTRRFLRGGKEYLAPCEKACPTGAINRSLEWNPEGE 333 >gi|84685011|ref|ZP_01012910.1| benzoyl-CoA oxygenase, A subunit [Maritimibacter alkaliphilus HTCC2654] gi|84666743|gb|EAQ13214.1| benzoyl-CoA oxygenase, A subunit [Rhodobacterales bacterium HTCC2654] Length = 397 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 11/68 (16%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L+++ E CI C CE CP +AIT +D KC +C C Sbjct: 5 LKQHLIDPEICIRCYTCEMTCPIEAITHNDDNVV-----------VDAEKCNFCMDCIPV 53 Query: 113 CPVDAIVE 120 CP +I E Sbjct: 54 CPTGSIDE 61 >gi|329765826|ref|ZP_08257392.1| putative ATPase RIL [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137669|gb|EGG41939.1| putative ATPase RIL [Candidatus Nitrosoarchaeum limnia SFB1] Length = 595 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 1/64 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E C K C C +SG C + + ID C CG+C + CP +AI Sbjct: 9 DKELCQP-KKCGLECIKYCPVNKSGADCIILNEESKKAQIDENVCNGCGICVKVCPFEAI 67 Query: 119 VEGP 122 Sbjct: 68 TIVN 71 >gi|296102657|ref|YP_003612803.1| electron transport complex protein RnfC [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295057116|gb|ADF61854.1| electron transport complex protein RnfC [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 607 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 25/111 (22%), Positives = 38/111 (34%), Gaps = 15/111 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ CI C C CPA + + G ++ CI CG C CP Sbjct: 373 EEKGCIRCSACADACPAD-LLPQQLYWYSKGQLHDKAQAHNLADCIECGACAWVCP---- 427 Query: 119 VEGPNFEFATETRQE------LYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 N RQE + +++R R+E+ R + + R Sbjct: 428 ---SNIPLVQYFRQEKAEIYAISMEEKRAAEAKARFEARQAR-LEREKLAR 474 >gi|270262058|ref|ZP_06190330.1| hypothetical protein SOD_b02650 [Serratia odorifera 4Rx13] gi|270043934|gb|EFA17026.1| hypothetical protein SOD_b02650 [Serratia odorifera 4Rx13] Length = 1177 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/117 (15%), Positives = 26/117 (22%), Gaps = 24/117 (20%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A + C C C A C Sbjct: 646 MLAGLGDAL------PVSAFPPDGTWPVGTTQWEKRNIAETIPLWQPDLCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHDGTR----------------RTVRYDIDMIKCIYCGLCQEACP 114 P AI + + + C C LC E CP Sbjct: 700 PHSAIRAKVVQPQAMEHAPASLQSLDVKARDMRGQKYVLQVAPEDCTGCNLCVEVCP 756 >gi|227540820|ref|ZP_03970869.1| possible Fe-S dehydrogenase [Corynebacterium glucuronolyticum ATCC 51866] gi|227183352|gb|EEI64324.1| possible Fe-S dehydrogenase [Corynebacterium glucuronolyticum ATCC 51866] Length = 892 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 21/59 (35%), Gaps = 2/59 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRT--VRYDIDMIKCIYCGLCQEACPV 115 C C C+ +CPA PR R D + C CG C E CPV Sbjct: 284 DAHTCTECNRCQDLCPAWNTGKPLSPRKVITDIRDGLEITDDVLWSCTNCGACVEQCPV 342 >gi|210630476|ref|ZP_03296479.1| hypothetical protein COLSTE_00364 [Collinsella stercoris DSM 13279] gi|210160478|gb|EEA91449.1| hypothetical protein COLSTE_00364 [Collinsella stercoris DSM 13279] Length = 421 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 10/64 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 ++C C C A CP A + + + + ++ CI CGLC E C Sbjct: 316 ECDHDKCTMCGDCVAACPVFACDLTANGK----------FTVEPTYCIGCGLCTEVCGDR 365 Query: 117 AIVE 120 A+ Sbjct: 366 ALKM 369 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 15/38 (39%), Positives = 17/38 (44%) Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 R + D KC CG C ACPV A N +F E Sbjct: 311 RVQLPECDHDKCTMCGDCVAACPVFACDLTANGKFTVE 348 Score = 35.5 bits (80), Expect = 2.3, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 2/56 (3%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 CI C C++ + + D+ + C CGLC +CP +A Sbjct: 55 NCIPCLACKS-DKSGCRACIDVCPVNAIEIEDGAIDV-LDSCRKCGLCVASCPTEA 108 >gi|254167893|ref|ZP_04874742.1| 4Fe-4S binding domain protein [Aciduliprofundum boonei T469] gi|197623184|gb|EDY35750.1| 4Fe-4S binding domain protein [Aciduliprofundum boonei T469] Length = 1052 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 21/64 (32%), Gaps = 9/64 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RC C +C C A A I+ + C+ C C ACP A Sbjct: 983 NPRRCAGCGICVDACFAGARYIDEEDHIA---------KVRTELCVGCAACANACPSGAA 1033 Query: 119 VEGP 122 V P Sbjct: 1034 VVMP 1037 Score = 35.5 bits (80), Expect = 2.6, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 16/40 (40%) Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E GP + ++ KCI C LC E C V I Sbjct: 40 EGGPGNFKARFKHRPQSVNEFKCIGCDLCHEKCDVKFIPM 79 Score = 33.9 bits (76), Expect = 7.5, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 30/103 (29%), Gaps = 29/103 (28%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103 F+ R E +CI C LC C + I + GP G R + Sbjct: 43 PGNFKARFKHRPQSVNEFKCIGCDLCHEKCDVKFIPMPLGP----GMRIIKNAE------ 92 Query: 104 IYCGLCQEACPVDAIV---------------EGPNFEFATETR 131 C + CPV AI P +E R Sbjct: 93 ----ECLDVCPVKAIQIPKEEEKEEKVDAVILSPEYEPEDIKR 131 >gi|153940224|ref|YP_001389380.1| iron-sulfur cluster-binding protein [Clostridium botulinum F str. Langeland] gi|152936120|gb|ABS41618.1| iron-sulfur cluster-binding protein [Clostridium botulinum F str. Langeland] gi|295317487|gb|ADF97864.1| iron-sulfur cluster-binding protein [Clostridium botulinum F str. 230613] Length = 387 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 5/58 (8%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+CI C C +CP + I+ + +M KCI C CQE CP AI Sbjct: 319 EKCIGCNRCAEVCPEKPYVIDMIKKGDKKIPVW-----NMKKCIRCFCCQELCPKGAI 371 >gi|254250832|ref|ZP_04944151.1| Dihydroorotate dehydrogenase 1 [Burkholderia cenocepacia PC184] gi|124879966|gb|EAY67322.1| Dihydroorotate dehydrogenase 1 [Burkholderia cenocepacia PC184] Length = 508 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 6/63 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117 ++RCI C LC C + + + +++ +C+ C LC CPV Sbjct: 412 DQDRCIQCGLCHIACEDTSHQAITATKDGV-----RHFEVIDSECVGCNLCMHVCPVEQC 466 Query: 118 IVE 120 I Sbjct: 467 ITM 469 >gi|189346229|ref|YP_001942758.1| glutamate synthase (NADPH) small subunit [Chlorobium limicola DSM 245] gi|189340376|gb|ACD89779.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chlorobium limicola DSM 245] Length = 577 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 22/59 (37%), Gaps = 6/59 (10%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C CK C + CP +A+T + +C+ C +C CP I G Sbjct: 520 CFDCKQCVSFCPQEAVTRLRDNPPG------EVVYTNYSRCVGCHICSLVCPSGYIQMG 572 >gi|125972722|ref|YP_001036632.1| glutamate synthase (NADPH) GltB2 subunit [Clostridium thermocellum ATCC 27405] gi|281416909|ref|ZP_06247929.1| Glutamate synthase (NADPH) [Clostridium thermocellum JW20] gi|125712947|gb|ABN51439.1| glutamate synthase (NADPH) GltB2 subunit [Clostridium thermocellum ATCC 27405] gi|281408311|gb|EFB38569.1| Glutamate synthase (NADPH) [Clostridium thermocellum JW20] Length = 501 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 9/64 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +RCI C++CE C + + + + KC+ C C CP A+ Sbjct: 15 NMDRCINCRVCERQCANEVHSYDQEKKIMCSD---------DSKCVNCHRCVALCPTRAL 65 Query: 119 VEGP 122 Sbjct: 66 KIVK 69 >gi|319793126|ref|YP_004154766.1| glutamate synthase (nadph) [Variovorax paradoxus EPS] gi|315595589|gb|ADU36655.1| Glutamate synthase (NADPH) [Variovorax paradoxus EPS] Length = 599 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 28/95 (29%), Gaps = 20/95 (21%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR--------------------CH 87 R + + E CI C C ICP I+ + Sbjct: 491 RCLNCDVQTVFNEPACIECDACVDICPMDCISFTANGEEAELRTRLKAPALNLTQDLYVS 550 Query: 88 DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 G + D C++CGLC E CP A Sbjct: 551 GGLKTGRVMVKDEDVCLHCGLCAERCPTGAWDMQK 585 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 18/60 (30%), Gaps = 2/60 (3%) Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 E A T ++ CI C C + CP+D I N E A Sbjct: 474 VEVELGFDAATAFKEAERCLNCDVQTVFN--EPACIECDACVDICPMDCISFTANGEEAE 531 >gi|309777308|ref|ZP_07672270.1| Fe-hydrogenase [Erysipelotrichaceae bacterium 3_1_53] gi|308914988|gb|EFP60766.1| Fe-hydrogenase [Erysipelotrichaceae bacterium 3_1_53] Length = 576 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 38/100 (38%), Gaps = 6/100 (6%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVR 95 P+EK + L R N +CI C C IC Q + + T V Sbjct: 122 PYEKKVVYTPWNQTFPLIRESN---KCIKCMRCIQICDKVQNLQVWDVQNTGSRTTVNVS 178 Query: 96 YD--IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 + I+ C CG C CPV+A+ + E A + + Sbjct: 179 LNRSIEEADCSLCGQCITHCPVNALHVREDSERAFDALND 218 >gi|295094493|emb|CBK83584.1| Coenzyme F420-reducing hydrogenase, beta subunit [Coprococcus sp. ART55/1] Length = 856 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 8/104 (7%) Query: 28 FKAKTTINYPFEKG--STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 F+ + + E+ R + + C C C ++CP AI+++ Sbjct: 88 FEKQESARQREEERVEWRKKAVRRDSDKTVGCIHPDYCCGCGACYSVCPVNAISMKYDSE 147 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 + +D KC CGLC++ CP + E A Sbjct: 148 G------FLAPVVDRSKCTNCGLCRKICPSINLEYKNTVEPACY 185 >gi|268323917|emb|CBH37505.1| putative Fe-only hydrogenase [uncultured archaeon] Length = 569 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 3/67 (4%) Query: 59 GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115 +CI C C +C Q +++ T D + C CG C ACPV Sbjct: 142 DPNKCILCGRCIRVCHDVQTVSVIGFVNRGPDTMVATVLDEGLGNVECTNCGQCIHACPV 201 Query: 116 DAIVEGP 122 AI E P Sbjct: 202 GAIKEKP 208 >gi|18978168|ref|NP_579525.1| putative polyferredoxin [Pyrococcus furiosus DSM 3638] gi|18893975|gb|AAL81920.1| putative polyferredoxin [Pyrococcus furiosus DSM 3638] Length = 167 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 29/131 (22%), Positives = 45/131 (34%), Gaps = 15/131 (11%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 Y + T + F R P ++ I C C+ ICP A+ ++ Sbjct: 6 YLRRGYITPDELFSIIPRPSEERLRKRPVAIPECPQQ-IPCTPCKEICPVNAVMMD---- 60 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNG 145 +D KCI C LC + CP A + R + Y+ LL Sbjct: 61 -----HPNDIPKVDYEKCIGCSLCVQVCPGLAFFM--IHYVGDKARITMPYE---LLPLP 110 Query: 146 DRWESEIVRNI 156 ++ E I+ N Sbjct: 111 EKGEEVILLNR 121 >gi|51244192|ref|YP_064076.1| iron-sulfur cluster binding protein [Desulfotalea psychrophila LSv54] gi|50875229|emb|CAG35069.1| related to iron-sulfur cluster binding protein [Desulfotalea psychrophila LSv54] Length = 299 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 14/61 (22%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 +++CI+C C +C AI+ + + +D I C CG+C + CP AI Sbjct: 65 QDKCISCGTCRDLCKFGAISED--------------FVVDPIGCEGCGICVDFCPEQAIE 110 Query: 120 E 120 Sbjct: 111 F 111 >gi|325661153|ref|ZP_08149780.1| hypothetical protein HMPREF0490_00513 [Lachnospiraceae bacterium 4_1_37FAA] gi|325472660|gb|EGC75871.1| hypothetical protein HMPREF0490_00513 [Lachnospiraceae bacterium 4_1_37FAA] Length = 263 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 31/83 (37%), Gaps = 11/83 (13%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P+E E CI C++C+ +CPA AI +E+ Sbjct: 191 VPYEAKHLVQCSSKEKGKDVMAVCSTGCIGCRMCQKVCPADAIVVENNLA---------- 240 Query: 96 YDIDMIKCIYCGLCQEACPVDAI 118 ID KC CG C E CP I Sbjct: 241 -WIDPEKCTNCGACAEKCPKKII 262 Score = 38.5 bits (88), Expect = 0.33, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 5/70 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCH-----DGTRRTVRYDIDMIKCIYCGLCQEAC 113 +E C AC C CP I + H + + CI C +CQ+ C Sbjct: 169 DKEACKACGKCIKACPKNLIELVPYEAKHLVQCSSKEKGKDVMAVCSTGCIGCRMCQKVC 228 Query: 114 PVDAIVEGPN 123 P DAIV N Sbjct: 229 PADAIVVENN 238 Score = 34.3 bits (77), Expect = 5.5, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 11/66 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + + C C CP AI I G +D C CG C +ACP + Sbjct: 138 KSCDYGCCGFGTCVKACPFDAIHIVDGVAV-----------VDKEACKACGKCIKACPKN 186 Query: 117 AIVEGP 122 I P Sbjct: 187 LIELVP 192 >gi|307689027|ref|ZP_07631473.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B] Length = 436 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 34/99 (34%), Gaps = 16/99 (16%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 L+YF + E G + C C C +C AI + Sbjct: 354 TLKYF------RHEYEEHIKYKKCVAGVCNALVKYYITDDCKGCTKCMNVCAVDAINGQ- 406 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 R+ ID KCI CG C++ C DAI++ Sbjct: 407 ---------VRSRHIIDADKCIRCGACRKICSFDAIIKT 436 >gi|301060589|ref|ZP_07201424.1| putative NAD-dependent formate dehydrogenase, beta subunit [delta proteobacterium NaphS2] gi|300445292|gb|EFK09222.1| putative NAD-dependent formate dehydrogenase, beta subunit [delta proteobacterium NaphS2] Length = 584 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 29/68 (42%), Gaps = 10/68 (14%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 AL ++ EE C C C CP +AI+ E +D KCI C C + Sbjct: 527 ALIKFEFIEENCTKCGQCFKACPVEAISWEKKQYPV----------LDKEKCIKCKTCID 576 Query: 112 ACPVDAIV 119 AC +AI Sbjct: 577 ACNFEAIQ 584 Score = 40.5 bits (93), Expect = 0.080, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 8/62 (12%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 I ++++ C CG C +ACPV+AI + E +Q DK Sbjct: 514 HIRDHVCPSRVCTALIKFEFIEENCTKCGQCFKACPVEAI--------SWEKKQYPVLDK 565 Query: 139 ER 140 E+ Sbjct: 566 EK 567 >gi|326790371|ref|YP_004308192.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Clostridium lentocellum DSM 5427] gi|326541135|gb|ADZ82994.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Clostridium lentocellum DSM 5427] Length = 575 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 22/64 (34%), Gaps = 12/64 (18%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + +E CI C +C + I G I+ C CGLC CP Sbjct: 519 NFDINDETCIKCGMCLKL---GCPAICKGEEG---------ISINTALCAGCGLCASVCP 566 Query: 115 VDAI 118 AI Sbjct: 567 KQAI 570 Score = 34.7 bits (78), Expect = 4.8, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 3/44 (6%) Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE-ACPVDAIVEGPN 123 P + +DI+ CI CG+C + CP AI +G Sbjct: 505 TKAPCKLIIKEKWANFDINDETCIKCGMCLKLGCP--AICKGEE 546 >gi|294496437|ref|YP_003542930.1| glutamate synthase (NADPH) GltB2 subunit [Methanohalophilus mahii DSM 5219] gi|292667436|gb|ADE37285.1| glutamate synthase (NADPH) GltB2 subunit [Methanohalophilus mahii DSM 5219] Length = 504 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 17/86 (19%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 ++C+ C C C E ID KC C C CP D Sbjct: 13 QIDRQQCMQCMRCVDNCSYGVFREEDDGNIL----------IDSRKCTACHRCISMCPRD 62 Query: 117 AIVEGP---NFE----FATETRQELY 135 AI ++ + E R+++ Sbjct: 63 AINLSERPVDYRSHPLWTPEAREDVI 88 >gi|291563209|emb|CBL42025.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [butyrate-producing bacterium SS3/4] Length = 279 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 27/88 (30%), Gaps = 13/88 (14%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P E + ++ L + C+ C C CP AI+ E + Sbjct: 183 CPVE-VPGNRTYKEYKVLPMDIQVSDECMGCGSCAESCPVGAISFEDPKMTNG------- 234 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPN 123 CI C C E CP A P Sbjct: 235 -----EACISCMRCVEICPQSARSGNPE 257 >gi|295400793|ref|ZP_06810769.1| dihydroorotate dehydrogenase family protein [Geobacillus thermoglucosidasius C56-YS93] gi|312111355|ref|YP_003989671.1| dihydroorotate dehydrogenase [Geobacillus sp. Y4.1MC1] gi|294977056|gb|EFG52658.1| dihydroorotate dehydrogenase family protein [Geobacillus thermoglucosidasius C56-YS93] gi|311216456|gb|ADP75060.1| dihydroorotate dehydrogenase family protein [Geobacillus sp. Y4.1MC1] Length = 422 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 6/58 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E++C+ C C C A + T + I C+ C LC CPV Sbjct: 341 DEDKCVGCGRCYVSCFDGAH------QAIVWDSETRKPRILEDHCVGCHLCLNVCPVY 392 >gi|50121205|ref|YP_050372.1| electron transport complex protein RnfB [Pectobacterium atrosepticum SCRI1043] gi|81693264|sp|Q6D4W3|RNFB_ERWCT RecName: Full=Electron transport complex protein rnfB; AltName: Full=Nitrogen fixation protein rnfB gi|49611731|emb|CAG75180.1| electron transport complex protein [Pectobacterium atrosepticum SCRI1043] Length = 192 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 22/73 (30%), Gaps = 10/73 (13%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 A E CI C C CP AI + + + C C LC Sbjct: 105 PARHVAWIDESNCIGCTKCIQACPVDAIIGSTK----------AVHTVVSDLCTGCDLCI 154 Query: 111 EACPVDAIVEGPN 123 CP D I P Sbjct: 155 SPCPTDCIELRPI 167 >gi|146277498|ref|YP_001167657.1| dihydropyrimidine dehydrogenase [Rhodobacter sphaeroides ATCC 17025] gi|145555739|gb|ABP70352.1| dihydrouracil dehydrogenase (NAD+) / dihydropyrimidine dehydrogenase (NADP+) [Rhodobacter sphaeroides ATCC 17025] Length = 434 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 8/76 (10%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI C C A C E + + +C+ Sbjct: 330 QYLNLNYVTKAQIDQDLCIKCGRCYAAC-------EDTSHQAIAMSPDRIFSVKDEECVA 382 Query: 106 CGLCQEACPV-DAIVE 120 C LC + CPV + I Sbjct: 383 CNLCVDVCPVENCITM 398 >gi|146296316|ref|YP_001180087.1| hypothetical protein Csac_1294 [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409892|gb|ABP66896.1| protein of unknown function DUF362 [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 375 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 11/66 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C C CPAQAI ++S +D+ KCI C C E CP AI Sbjct: 314 DRNACIGCAECFNACPAQAIEMKSRKAY-----------VDLKKCIRCYCCHELCPAKAI 362 Query: 119 VEGPNF 124 + +F Sbjct: 363 MIKRSF 368 >gi|308049499|ref|YP_003913065.1| D-lactate dehydrogenase (cytochrome) [Ferrimonas balearica DSM 9799] gi|307631689|gb|ADN75991.1| D-lactate dehydrogenase (cytochrome) [Ferrimonas balearica DSM 9799] Length = 938 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 12/57 (21%), Positives = 21/57 (36%) Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 + I E ++ D + +CI CG C++ CP ++ P T Sbjct: 511 LLNPGVILNEDSEIHIKAIKQAAVVDDWVDRCIECGFCEKTCPTSSLNMSPRHRITT 567 Score = 37.4 bits (85), Expect = 0.64, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 24/71 (33%), Gaps = 16/71 (22%) Query: 61 ERCIACKLCEAICPAQ----------------AITIESGPRCHDGTRRTVRYDIDMIKCI 104 +RCI C CE CP A +SG + R + C Sbjct: 540 DRCIECGFCEKTCPTSSLNMSPRHRITTLREIARLEQSGEQAAAQQMREAAQYDVIDTCT 599 Query: 105 YCGLCQEACPV 115 C LC ACPV Sbjct: 600 ACQLCTIACPV 610 >gi|297184237|gb|ADI20355.1| uncharacterized anaerobic dehydrogenase [uncultured alpha proteobacterium EB080_L27A02] Length = 919 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 5/65 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID----MIKCIYCGLCQEACP 114 + CI C LC C + + G + +D+D C+ CG C +ACP Sbjct: 147 NLDACIQCNLCVRACR-EVQVNDVIGLAGRGHDAKIVFDMDDPMGESSCVACGECVQACP 205 Query: 115 VDAIV 119 A++ Sbjct: 206 TGALM 210 >gi|269121613|ref|YP_003309790.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sebaldella termitidis ATCC 33386] gi|268615491|gb|ACZ09859.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sebaldella termitidis ATCC 33386] Length = 57 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 26/65 (40%), Positives = 31/65 (47%), Gaps = 11/65 (16%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 Y +E CIAC CE +CP +AI G Y ID CI CG C+ C Sbjct: 1 MAYSINKETCIACGACEGVCPVEAIAEADGK-----------YAIDGATCIDCGACEGVC 49 Query: 114 PVDAI 118 PV+AI Sbjct: 50 PVEAI 54 >gi|255524301|ref|ZP_05391259.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7] gi|296185258|ref|ZP_06853668.1| protein HymB [Clostridium carboxidivorans P7] gi|255511984|gb|EET88266.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7] gi|296050092|gb|EFG89516.1| protein HymB [Clostridium carboxidivorans P7] Length = 626 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 10/67 (14%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 AL +Y ++CI C C +CP +AI+ E + I+ KCI CG C Sbjct: 567 ALLKYSIDPKKCIGCTACTKVCPTKAISGEVKKA----------HVINKEKCINCGACSS 616 Query: 112 ACPVDAI 118 C +I Sbjct: 617 TCKFSSI 623 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 9/72 (12%) Query: 70 EAICPAQAITIESGPRCHDG-TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 + ++ C G ++Y ID KCI C C + CP AI + Sbjct: 544 MKFFWDEYVSHVKDKHCPAGVCTALLKYSIDPKKCIGCTACTKVCPTKAI--------SG 595 Query: 129 ETRQELYYDKER 140 E ++ +KE+ Sbjct: 596 EVKKAHVINKEK 607 >gi|225389522|ref|ZP_03759246.1| hypothetical protein CLOSTASPAR_03270 [Clostridium asparagiforme DSM 15981] gi|225044423|gb|EEG54669.1| hypothetical protein CLOSTASPAR_03270 [Clostridium asparagiforme DSM 15981] Length = 716 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 21/81 (25%), Gaps = 15/81 (18%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG N + CI C C +CP +A Sbjct: 218 RGIAVKVPVWN-PDNCIQCNFCAYVCPHAVIRPAVLSADEAAKAPADMKLKDMTGMPGYK 276 Query: 94 VRYDIDMIKCIYCGLCQEACP 114 + + C CG C CP Sbjct: 277 FAITVSALDCTGCGSCANVCP 297 >gi|116054170|ref|YP_788613.1| dihydropyrimidine dehydrogenase [Pseudomonas aeruginosa UCBPP-PA14] gi|254237329|ref|ZP_04930652.1| hypothetical protein PACG_03400 [Pseudomonas aeruginosa C3719] gi|254243537|ref|ZP_04936859.1| hypothetical protein PA2G_04355 [Pseudomonas aeruginosa 2192] gi|115589391|gb|ABJ15406.1| putative dihydroorotate dehydrogenase [Pseudomonas aeruginosa UCBPP-PA14] gi|126169260|gb|EAZ54771.1| hypothetical protein PACG_03400 [Pseudomonas aeruginosa C3719] gi|126196915|gb|EAZ60978.1| hypothetical protein PA2G_04355 [Pseudomonas aeruginosa 2192] Length = 425 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 4/66 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117 ++ CI C C C + + DGT R Y++ +C+ C LCQ CPV + Sbjct: 342 DQDACIGCGRCHIACEDTSHQAIASLPRADGTHR---YEVIDAECVGCNLCQITCPVENC 398 Query: 118 IVEGPN 123 I P Sbjct: 399 IEMVPQ 404 >gi|4029298|emb|CAA76342.1| hydrogenase [Nyctotherus ovalis] Length = 456 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 1/65 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++CI C +C C Q + G +D+ +CI CG C CP AI Sbjct: 167 DNDKCINCDICVHTCSLQGLNALGFYNEE-GHAVKSMGTLDVSECIQCGQCINRCPTGAI 225 Query: 119 VEGPN 123 E Sbjct: 226 TEKSE 230 >gi|78044780|ref|YP_361471.1| putative sulfite reductase, iron-sulfur binding subunit [Carboxydothermus hydrogenoformans Z-2901] gi|77996895|gb|ABB15794.1| putative sulfite reductase, iron-sulfur binding subunit [Carboxydothermus hydrogenoformans Z-2901] Length = 302 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 26/102 (25%), Positives = 37/102 (36%), Gaps = 22/102 (21%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 +E C AC LC ICP AIT+ +D CI CG C +ACP + Sbjct: 171 NWIKENCTACGLCTKICPVNAITLNQQEIS-----------VDYEVCIGCGDCVKACPFE 219 Query: 117 AIVEGPNFEFAT---ETRQ--------ELYYDKERLLNNGDR 147 A + + R+ KE++ D+ Sbjct: 220 AYRGEYGYSLSFGGSFGRKINIGKKLIPFISSKEKMFAIFDK 261 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 17/44 (38%) Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 A G + R + C CGLC + CPV+AI Sbjct: 151 ANNCLKAEENDLGIKGVCRPNWIKENCTACGLCTKICPVNAITL 194 >gi|15595636|ref|NP_249130.1| dihydropyrimidine dehydrogenase [Pseudomonas aeruginosa PAO1] gi|9946297|gb|AAG03828.1|AE004481_4 probable oxidoreductase [Pseudomonas aeruginosa PAO1] Length = 425 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 4/66 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117 ++ CI C C C + + DGT R Y++ +C+ C LCQ CPV + Sbjct: 342 DQDACIGCGRCHIACEDTSHQAIASLPRADGTHR---YEVIDAECVGCNLCQITCPVENC 398 Query: 118 IVEGPN 123 I P Sbjct: 399 IEMVPQ 404 >gi|86147960|ref|ZP_01066264.1| electron transport complex protein RnfB [Vibrio sp. MED222] gi|85834285|gb|EAQ52439.1| electron transport complex protein RnfB [Vibrio sp. MED222] Length = 197 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 25/84 (29%), Gaps = 10/84 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 + S E+ CI C C CP AI + + + Sbjct: 90 VEVEDSAHDLDNKVKTVAFIHEDMCIGCTKCIQACPVDAIVGGTK----------ALHTV 139 Query: 99 DMIKCIYCGLCQEACPVDAIVEGP 122 +C C LC CP D I P Sbjct: 140 IKDECTGCDLCVAPCPTDCIEMIP 163 >gi|84393395|ref|ZP_00992154.1| electron transport complex protein RnfB [Vibrio splendidus 12B01] gi|148977611|ref|ZP_01814187.1| electron transport complex protein RnfB [Vibrionales bacterium SWAT-3] gi|218708973|ref|YP_002416594.1| electron transport complex protein RnfB [Vibrio splendidus LGP32] gi|254807928|sp|B7VLT8|RNFB_VIBSL RecName: Full=Electron transport complex protein rnfB gi|84376004|gb|EAP92893.1| electron transport complex protein RnfB [Vibrio splendidus 12B01] gi|145963126|gb|EDK28394.1| electron transport complex protein RnfB [Vibrionales bacterium SWAT-3] gi|218321992|emb|CAV18005.1| Electron transport complex protein rnfB [Vibrio splendidus LGP32] Length = 197 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 25/84 (29%), Gaps = 10/84 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 + S E+ CI C C CP AI + + + Sbjct: 90 VEVEDSAHDLDNKVKTVAFIHEDMCIGCTKCIQACPVDAIVGGTK----------ALHTV 139 Query: 99 DMIKCIYCGLCQEACPVDAIVEGP 122 +C C LC CP D I P Sbjct: 140 IKDECTGCDLCVAPCPTDCIEMIP 163 >gi|116749229|ref|YP_845916.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116698293|gb|ABK17481.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Syntrophobacter fumaroxidans MPOB] Length = 576 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 3/58 (5%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +RC C LC +CP A+ IE +R +I C CG+C CP I Sbjct: 497 DRCDGCALCVDLCPYLALKIEEVEEEGRKRKRIKTDNI---LCKGCGVCAATCPKGGI 551 >gi|331002204|ref|ZP_08325723.1| hypothetical protein HMPREF0491_00585 [Lachnospiraceae oral taxon 107 str. F0167] gi|330411298|gb|EGG90714.1| hypothetical protein HMPREF0491_00585 [Lachnospiraceae oral taxon 107 str. F0167] Length = 393 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 12/58 (20%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C C CP AIT+E+ + I C CG C E CP DAI Sbjct: 8 KDCRGCTKCVKSCPFDAITMENKKA------------VIGIACTSCGTCIEVCPFDAI 53 Score = 33.9 bits (76), Expect = 7.9, Method: Composition-based stats. Identities = 8/25 (32%), Positives = 11/25 (44%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 + C C C ++CP DAI Sbjct: 5 VIEKDCRGCTKCVKSCPFDAITMEN 29 >gi|315652760|ref|ZP_07905734.1| electron transfer flavoprotein alpha subunit [Eubacterium saburreum DSM 3986] gi|315484962|gb|EFU75370.1| electron transfer flavoprotein alpha subunit [Eubacterium saburreum DSM 3986] Length = 393 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 12/58 (20%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C C CP AIT+E+ + I C CG C E CP DAI Sbjct: 8 KDCRGCTKCVKSCPFDAITMENKKA------------VIGIACTSCGTCIEVCPFDAI 53 Score = 33.9 bits (76), Expect = 7.9, Method: Composition-based stats. Identities = 8/25 (32%), Positives = 11/25 (44%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 + C C C ++CP DAI Sbjct: 5 VIEKDCRGCTKCVKSCPFDAITMEN 29 >gi|300087354|ref|YP_003757876.1| NADH dehydrogenase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527087|gb|ADJ25555.1| NADH dehydrogenase (quinone) [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 622 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 14/92 (15%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 LRY F + T + + +L Y +RC C+LC CPAQAIT Sbjct: 537 TTLRY-FHDEYTAHIRDRRCPAGVC----KSLITYRIINDRCTGCRLCVKACPAQAITFA 591 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 R +D C CG+C+E C Sbjct: 592 GKRRPVI---------LDEAVCNRCGICREVC 614 Score = 40.9 bits (94), Expect = 0.063, Method: Composition-based stats. Identities = 12/50 (24%), Positives = 16/50 (32%) Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 I + + Y I +C C LC +ACP AI Sbjct: 541 YFHDEYTAHIRDRRCPAGVCKSLITYRIINDRCTGCRLCVKACPAQAITF 590 >gi|294495628|ref|YP_003542121.1| formylmethanofuran dehydrogenase, subunit F [Methanohalophilus mahii DSM 5219] gi|292666627|gb|ADE36476.1| formylmethanofuran dehydrogenase, subunit F [Methanohalophilus mahii DSM 5219] Length = 437 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 24/92 (26%), Positives = 35/92 (38%), Gaps = 1/92 (1%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E R R + R +RCI C LC ICP +A+ G + Sbjct: 24 EGSHIMYRQRTDKGTRTLDYDYKRCIGCGLCVRICPTEALEAGPIHEIATGMDAPPVM-L 82 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 D+ KC +C +C CPV+A + + Sbjct: 83 DLDKCTFCSMCANFCPVNAFRMSAEGDLPEDD 114 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 25/67 (37%), Positives = 29/67 (43%), Gaps = 1/67 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E++C C LC ICP AI G R + ID KC CG C CP DA+ Sbjct: 208 DEDQCDYCVLCADICPEDAIE-VKGTRRGEAPVIEGGARIDPEKCTVCGWCDIVCPYDAV 266 Query: 119 VEGPNFE 125 FE Sbjct: 267 DITKPFE 273 Score = 42.0 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 6/78 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPVD 116 ++C C +C CP A + + + V + KC+ C LC+ CP D Sbjct: 83 DLDKCTFCSMCANFCPVNAFRMSAEGDLPEDDLFPVLEGRAMINEKCLPCLLCEATCPED 142 Query: 117 AIVEGPNFEFATETRQEL 134 AI + E +T++EL Sbjct: 143 AI----DLELEMQTKEEL 156 Score = 40.5 bits (93), Expect = 0.085, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 2/60 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E++C C LC C A + + +D +C YC LC + CP DAI Sbjct: 170 DEDKCTLCGLCARFC--DAFMLLEKEPGPLDPTPFEQLLVDEDQCDYCVLCADICPEDAI 227 Score = 38.9 bits (89), Expect = 0.24, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 9/81 (11%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93 I P++ + F GE L + C C +CP+ I G + Sbjct: 259 IVCPYDAVDITKPFEGELKLIDANINKCDPTGCHACFNVCPSHLWYI-----PESGQKIA 313 Query: 94 VRYDIDMIKCIYCGLCQEACP 114 R D+ C YCG C+ ACP Sbjct: 314 ARDDL----CTYCGACENACP 330 Score = 37.0 bits (84), Expect = 0.81, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 25/69 (36%), Gaps = 5/69 (7%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIE-----SGPRCHDGTRRTVRYDIDMIKCI 104 L E+C+ C LCEA CP AI +E ID KC Sbjct: 116 FPVLEGRAMINEKCLPCLLCEATCPEDAIDLELEMQTKEELAPFKEGEEGVITIDEDKCT 175 Query: 105 YCGLCQEAC 113 CGLC C Sbjct: 176 LCGLCARFC 184 >gi|270158204|ref|ZP_06186861.1| electron transport complex family protein [Legionella longbeachae D-4968] gi|289163539|ref|YP_003453677.1| Electron transport complex protein [Legionella longbeachae NSW150] gi|269990229|gb|EEZ96483.1| electron transport complex family protein [Legionella longbeachae D-4968] gi|288856712|emb|CBJ10523.1| Electron transport complex protein [Legionella longbeachae NSW150] Length = 204 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 10/59 (16%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 CI C C CP AI + + + +C CGLC CPVD I Sbjct: 83 ECIGCTKCIKACPVDAIIGSGK----------LMHAVMTHECTGCGLCVAPCPVDCIEM 131 Score = 37.4 bits (85), Expect = 0.77, Method: Composition-based stats. Identities = 15/42 (35%), Positives = 19/42 (45%) Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 R I +CI C C +ACPVDAI+ A T + Sbjct: 72 RPPSVAVIREAECIGCTKCIKACPVDAIIGSGKLMHAVMTHE 113 >gi|254491636|ref|ZP_05104815.1| electron transport complex, RnfABCDGE type, B subunit subfamily [Methylophaga thiooxidans DMS010] gi|224463114|gb|EEF79384.1| electron transport complex, RnfABCDGE type, B subunit subfamily [Methylophaga thiooxydans DMS010] Length = 172 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 30/93 (32%), Gaps = 10/93 (10%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E E E+RCI C LC CP AI + + + Sbjct: 75 EPKPLDEECGVEKPKTLAVIDEDRCIGCTLCIQACPVDAILGAAK----------HMHTV 124 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 +C C LC E CPVD I + R Sbjct: 125 IADECTGCELCVEPCPVDCIDMVEVAQNPNTWR 157 >gi|213579914|ref|ZP_03361740.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 259 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 25/78 (32%), Gaps = 12/78 (15%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C C C CP I + I +C CG C CP A+ Sbjct: 190 PQECRMCGACWRSCPENVIQFDDD-----------TLTIAAARCTGCGGCAAVCPHQALR 238 Query: 120 EGPNFEFATETRQELYYD 137 + E A+ TR + Sbjct: 239 LRFDVEPAS-TRHSAVHT 255 Score = 35.1 bits (79), Expect = 3.0, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID +CI CG C CPVDAI Sbjct: 47 IDTTRCIACGDCLFVCPVDAI 67 >gi|188996386|ref|YP_001930637.1| ferredoxin-type protein, NapH/MauN family [Sulfurihydrogenibium sp. YO3AOP1] gi|188931453|gb|ACD66083.1| ferredoxin-type protein, NapH/MauN family [Sulfurihydrogenibium sp. YO3AOP1] Length = 292 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 7/72 (9%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G+ ++ R + E+C C C+++CP + ++ CI CG Sbjct: 213 GQKSIIRVHHNHEKCTLCMECKSVCP-------EKQVLSMVGKDGYTSFVNSGACINCGR 265 Query: 109 CQEACPVDAIVE 120 C E CP DA+ Sbjct: 266 CIEVCPADALNF 277 Score = 35.5 bits (80), Expect = 2.6, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 6/48 (12%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 C +CP A G + +R + KC C C+ CP Sbjct: 197 GWCGHLCPLGAFYSI------IGQKSIIRVHHNHEKCTLCMECKSVCP 238 >gi|146311476|ref|YP_001176550.1| electron transport complex protein RnfB [Enterobacter sp. 638] gi|145318352|gb|ABP60499.1| electron transport complex, RnfABCDGE type, B subunit [Enterobacter sp. 638] Length = 192 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 23/76 (30%), Gaps = 10/76 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI + + + C C LC CP I Sbjct: 113 DEANCIGCTKCIQACPVDAIVGAT----------RAMHTVIADLCTGCNLCVAPCPTQCI 162 Query: 119 VEGPNFEFATETRQEL 134 P + +L Sbjct: 163 DLRPVETTTESWKWDL 178 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C C +ACPVDAI Sbjct: 112 IDEANCIGCTKCIQACPVDAI 132 >gi|116235062|dbj|BAF34980.1| trichloroethene reductive dehalogenase [uncultured Dehalococcoides sp.] Length = 554 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 3/60 (5%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID---MIKCIYCGLCQEACPVD 116 E C C +C CP QAI+ E Y+ KCI C C+ CP Sbjct: 434 REFCKTCGICAEHCPTQAISHEGPRYDSPYWDNVSGYEGWHLDHHKCINCTNCEAFCPFF 493 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%) Query: 103 CIYCGLCQEACPVDAI-VEGPNFE 125 C CG+C E CP AI EGP ++ Sbjct: 437 CKTCGICAEHCPTQAISHEGPRYD 460 >gi|57640966|ref|YP_183444.1| putative ATPase RIL [Thermococcus kodakarensis KOD1] gi|57159290|dbj|BAD85220.1| predicted ATPase, RNase L inhibitor homolog [Thermococcus kodakarensis KOD1] Length = 594 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 21/72 (29%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 R ++C K +C G R I C CG+C C Sbjct: 3 RIAVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENYRPIIQEASCTGCGICVHKC 62 Query: 114 PVDAIVEGPNFE 125 P +AI E Sbjct: 63 PFNAITIVNLPE 74 >gi|305666617|ref|YP_003862904.1| ferredoxin [Maribacter sp. HTCC2170] gi|88708888|gb|EAR01123.1| ferredoxin [Maribacter sp. HTCC2170] Length = 298 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 26/64 (40%), Gaps = 11/64 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI C CE ICP AI +++ ID C C C E CP +I Sbjct: 218 CDVACIGCSKCEDICPKDAIDMDNNLAY-----------IDPDLCTLCRKCVEVCPTHSI 266 Query: 119 VEGP 122 +E Sbjct: 267 IETN 270 Score = 42.4 bits (98), Expect = 0.022, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 9/65 (13%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + + C+ C +C A+ ++ +T I KC CG C +ACP Sbjct: 138 DCQYGCLGDGDCVNVCDFDAMYMDE---------KTGLPVIITDKCTSCGACVKACPRHI 188 Query: 118 IVEGP 122 + P Sbjct: 189 LEMRP 193 Score = 38.5 bits (88), Expect = 0.28, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 8/74 (10%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCH--------DGTRRTVRYDIDMIKCIYCGLCQEA 112 ++C +C C CP + + + + + + + CI C C++ Sbjct: 172 DKCTSCGACVKACPRHILEMRPRNKRDLKIFVGCLNEDKGGIAKRACDVACIGCSKCEDI 231 Query: 113 CPVDAIVEGPNFEF 126 CP DAI N + Sbjct: 232 CPKDAIDMDNNLAY 245 >gi|219666754|ref|YP_002457189.1| reductive dehalogenase [Desulfitobacterium hafniense DCB-2] gi|19421883|gb|AAL87772.1|AF403183_8 putative reductive dehalogenase [Desulfitobacterium hafniense DCB-2] gi|219537014|gb|ACL18753.1| reductive dehalogenase [Desulfitobacterium hafniense DCB-2] Length = 463 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 7/72 (9%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGT-------RRTVRYDIDMIKCIYCGLCQEAC 113 + C C C CPA+AIT + ++G ++ + + + CG C + C Sbjct: 345 DFCRVCNKCADNCPAEAITHDKDMVEYNGYLRWNSDYKKCAEFRAGNDEGVSCGRCIKVC 404 Query: 114 PVDAIVEGPNFE 125 P + + E Sbjct: 405 PWSSKEDSWFHE 416 >gi|323498080|ref|ZP_08103085.1| electron transport complex protein RnfB [Vibrio sinaloensis DSM 21326] gi|323316860|gb|EGA69866.1| electron transport complex protein RnfB [Vibrio sinaloensis DSM 21326] Length = 193 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 10/66 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E+ CI C C CP AI + + + +C C LC CP D Sbjct: 107 FIHEDMCIGCTKCIQACPVDAIVGGTK----------ALHTVIKDECTGCDLCVAPCPTD 156 Query: 117 AIVEGP 122 I P Sbjct: 157 CIEMIP 162 Score = 37.8 bits (86), Expect = 0.58, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 25/74 (33%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 P R + +C A + +E+ H+ I CI Sbjct: 55 PGCRPYAEAIANGDEINKCPPGGQATIEKLADLMGVEATESAHELDAVKTVAFIHEDMCI 114 Query: 105 YCGLCQEACPVDAI 118 C C +ACPVDAI Sbjct: 115 GCTKCIQACPVDAI 128 >gi|302389269|ref|YP_003825090.1| electron transport complex, RnfABCDGE type, C subunit [Thermosediminibacter oceani DSM 16646] gi|302199897|gb|ADL07467.1| electron transport complex, RnfABCDGE type, C subunit [Thermosediminibacter oceani DSM 16646] Length = 438 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 17/53 (32%), Gaps = 1/53 (1%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 CI C C CP + G G + CI CG C CP Sbjct: 365 PCIRCARCVDACPIHLLPTYLGKLAERGMWVEAE-RYHALDCIECGCCAYVCP 416 >gi|222099459|ref|YP_002534027.1| NADP-reducing hydrogenase, subunit D [Thermotoga neapolitana DSM 4359] gi|221571849|gb|ACM22661.1| NADP-reducing hydrogenase, subunit D [Thermotoga neapolitana DSM 4359] Length = 600 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 3/65 (4%) Query: 59 GEERCIACKLCEAIC-PAQAITIESGPRCHDGTRRTVRYDI--DMIKCIYCGLCQEACPV 115 +CI C+ C +C Q + I S T +D+ CI CG C CP Sbjct: 162 EISKCIKCQRCVRVCSEVQGMHIYSMVERGYRTYPGTPFDMPVYETDCIGCGQCAVFCPT 221 Query: 116 DAIVE 120 AIVE Sbjct: 222 GAIVE 226 >gi|218889181|ref|YP_002438045.1| dihydropyrimidine dehydrogenase [Pseudomonas aeruginosa LESB58] gi|218769404|emb|CAW25164.1| probable oxidoreductase [Pseudomonas aeruginosa LESB58] Length = 425 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 4/66 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117 ++ CI C C C + + DGT R Y++ +C+ C LCQ CPV + Sbjct: 342 DQDACIGCGRCHIACEDTSHQAIASLPRADGTHR---YEVIDAECVGCNLCQITCPVENC 398 Query: 118 IVEGPN 123 I P Sbjct: 399 IEMVPQ 404 >gi|160931195|ref|ZP_02078598.1| hypothetical protein CLOLEP_00033 [Clostridium leptum DSM 753] gi|156869807|gb|EDO63179.1| hypothetical protein CLOLEP_00033 [Clostridium leptum DSM 753] Length = 865 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 24/127 (18%), Positives = 36/127 (28%), Gaps = 24/127 (18%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P G R E+C CK+C +E+ R + Sbjct: 695 CPNNCVKPDLNDLGIIGQRIPQVDLEKCRGCKVC---------QVENTCPIKVAKVRDGK 745 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRN 155 ID C +CG C CP A+ + Y G RW ++ + Sbjct: 746 VVIDDSICNHCGRCVGKCPFKAVEAHQD--------GYRVY-------IGGRWGKKVAQG 790 Query: 156 IVTDSPY 162 D + Sbjct: 791 KYLDKVF 797 >gi|118444096|ref|YP_877287.1| electron transfer flavoprotein, alpha subunit [Clostridium novyi NT] gi|118134552|gb|ABK61596.1| electron transfer flavoprotein, alpha subunit [Clostridium novyi NT] Length = 396 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 12/63 (19%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++C+ CK+C CP AI IE+ I C CG C C +AI Sbjct: 9 DKCVGCKICANTCPFGAIEIENKKA------------IIKDNCTLCGSCINVCKFNAIEL 56 Query: 121 GPN 123 + Sbjct: 57 KKD 59 Score = 34.7 bits (78), Expect = 4.1, Method: Composition-based stats. Identities = 9/26 (34%), Positives = 11/26 (42%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGP 122 I KC+ C +C CP AI Sbjct: 5 TILKDKCVGCKICANTCPFGAIEIEN 30 >gi|15899475|ref|NP_344080.1| molybdopterin oxidoreductase, iron-sulfur binding subunit [Sulfolobus solfataricus P2] gi|13816091|gb|AAK42870.1| Molybdopterin oxidoreductase, iron-sulfur binding subunit [Sulfolobus solfataricus P2] Length = 409 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 5/78 (6%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 +R + + IAC C+ Q + + G R I KCI Sbjct: 43 NWRSLIVMTHGESKTALSIACNHCDNPTCMQVCPANAIEKNEMGIVR-----IRDDKCIG 97 Query: 106 CGLCQEACPVDAIVEGPN 123 CG C ACP +A+ Sbjct: 98 CGFCTWACPYEALKFNNE 115 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 4/91 (4%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 + P ++ + +++CI C C CP +A+ + Sbjct: 65 HCDNPTCMQVCPANAIEKNEMGIVRIRDDKCIGCGFCTWACPYEALKFNNEGVMSKCHFC 124 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 R + K I C EACP A+ G Sbjct: 125 YDR--LAEGKGI--PYCVEACPTGALAFGWI 151 >gi|115445575|ref|NP_001046567.1| Os02g0282900 [Oryza sativa Japonica Group] gi|47848571|dbj|BAD22422.1| putative 68 kDa protein HP68 [Oryza sativa Japonica Group] gi|113536098|dbj|BAF08481.1| Os02g0282900 [Oryza sativa Japonica Group] gi|125581670|gb|EAZ22601.1| hypothetical protein OsJ_06269 [Oryza sativa Japonica Group] gi|215768320|dbj|BAH00549.1| unnamed protein product [Oryza sativa Japonica Group] Length = 608 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 23/54 (42%) Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C + +G +C + T + I CI CG+C + CP DAI Sbjct: 25 CGQQCRKRCPVNATGRQCIEVTPSSRVSLISEELCIGCGICVKVCPFDAIQIIN 78 >gi|94309500|ref|YP_582710.1| formate dehydrogenase subunit alpha [Cupriavidus metallidurans CH34] gi|93353352|gb|ABF07441.1| NAD-dependent formate dehydrogenase alpha subunit [Cupriavidus metallidurans CH34] Length = 957 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 21/70 (30%), Gaps = 3/70 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T SG C+ CG C + Sbjct: 165 YFTYDPSKCIVCNRCVRACEETQGTFALTISGRGFDSRVAAGTSQPFMESDCVSCGACVQ 224 Query: 112 ACPVDAIVEG 121 ACP + E Sbjct: 225 ACPTATLTET 234 >gi|332558611|ref|ZP_08412933.1| dihydropyrimidine dehydrogenase subunit B [Rhodobacter sphaeroides WS8N] gi|332276323|gb|EGJ21638.1| dihydropyrimidine dehydrogenase subunit B [Rhodobacter sphaeroides WS8N] Length = 434 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 28/78 (35%), Gaps = 8/78 (10%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI C C A C E + + +C+ Sbjct: 330 QYLNLNYVAKAQIDQDLCIKCGRCYAAC-------EDTSHQAIAMSTDRTFTVKDEECVA 382 Query: 106 CGLCQEACPV-DAIVEGP 122 C LC + CPV D I Sbjct: 383 CNLCVDVCPVEDCITMRK 400 >gi|304314406|ref|YP_003849553.1| glutamate synthase, subunit 2 [Methanothermobacter marburgensis str. Marburg] gi|302587865|gb|ADL58240.1| predicted glutamate synthase, subunit 2 [Methanothermobacter marburgensis str. Marburg] Length = 499 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 29/94 (30%), Gaps = 15/94 (15%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 E C C C CP I +G + C+ C +C+E C Sbjct: 25 MCDNRDESLCANCYSCYNNCPHDVYEIINGEPVP----------LRHENCVGCRICEEMC 74 Query: 114 PVDAIVEGPNFEFATETRQELYYDKERLLNNGDR 147 P +AI E R+ + LL + Sbjct: 75 PNNAI----EVNAVPEDRRN-VWSFTDLLEIQRK 103 >gi|303244682|ref|ZP_07331014.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanothermococcus okinawensis IH1] gi|302484990|gb|EFL47922.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanothermococcus okinawensis IH1] Length = 501 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 22/77 (28%), Positives = 29/77 (37%), Gaps = 2/77 (2%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100 ++ Y RC C CE +CP I ++ + +R Y Sbjct: 53 RECPNDAIKKNEFGGYYVDRRRCNGCGTCEKVCPINIIKMKKVEKTVKNGKRAFVY--PD 110 Query: 101 IKCIYCGLCQEACPVDA 117 CI CGLC E CP DA Sbjct: 111 GICIMCGLCVEVCPYDA 127 Score = 41.6 bits (96), Expect = 0.039, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 3/72 (4%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 A+ E+CI C C CP A+ I + + I + CI CGLC + Sbjct: 239 AINCGEVKNEKCILCGNCIEKCPKDALQISNFKVVKIKEDKKT---IPLKHCINCGLCAD 295 Query: 112 ACPVDAIVEGPN 123 CP A+ N Sbjct: 296 NCPAGALKIEDN 307 Score = 40.5 bits (93), Expect = 0.072, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 36/101 (35%), Gaps = 10/101 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 PF++ S +A+ N CI C C CP AI Sbjct: 18 CPFKEISKCMEVCPTNAIILIDNKAFSCITCGTCARECPNDAIKKNE----------FGG 67 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 Y +D +C CG C++ CP++ I + ++ Y Sbjct: 68 YYVDRRRCNGCGTCEKVCPINIIKMKKVEKTVKNGKRAFVY 108 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 29/74 (39%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + ++ CI C C +CP AIT++ ++ + R I C+ C C Sbjct: 361 EIKKFDVIRDDNCIGCGTCSNVCPNDAITVKIIKFKNEICKSIKREVIFNENCVMCENCA 420 Query: 111 EACPVDAIVEGPNF 124 CP D I + Sbjct: 421 IHCPRDVIPNITGY 434 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 9/56 (16%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C +CE CP +AI+I+ + I CI CG C CP DAI Sbjct: 342 CVLCGICENNCPNKAISIKEIKKFD---------VIRDDNCIGCGTCSNVCPNDAI 388 Score = 37.0 bits (84), Expect = 0.86, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 22/66 (33%), Gaps = 15/66 (22%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + C C +C +CP AI KCI CG C E CP D Sbjct: 219 KENVDGCTRCNICGDVCPKDAINCGEVKN---------------EKCILCGNCIEKCPKD 263 Query: 117 AIVEGP 122 A+ Sbjct: 264 ALQISN 269 Score = 35.1 bits (79), Expect = 3.2, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 31/105 (29%), Gaps = 15/105 (14%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP---RCHDGT 90 P + S + + + CI C LC CPA A+ IE Sbjct: 258 EKCPKDALQISNFKVVKIKEDKKTIPLKHCINCGLCADNCPAGALKIEDNKVLYDPSSCK 317 Query: 91 RRTVRYDIDM------------IKCIYCGLCQEACPVDAIVEGPN 123 +I C+ CG+C+ CP AI Sbjct: 318 LCNTCVNICPQGVRINKGKFIDGGCVLCGICENNCPNKAISIKEI 362 Score = 34.7 bits (78), Expect = 4.3, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 E C+ C+ C CP I +G + + D C+ CGLC + CP +A+ Sbjct: 410 NENCVMCENCAIHCPRDVIPNITGYK-KIVDKNNSFIRTDFDFCVQCGLCNKICPNNAVD 468 Query: 120 EGP 122 +G Sbjct: 469 KGK 471 >gi|302387337|ref|YP_003823159.1| Electron transfer flavoprotein alpha/beta-subunit [Clostridium saccharolyticum WM1] gi|302197965|gb|ADL05536.1| Electron transfer flavoprotein alpha/beta-subunit [Clostridium saccharolyticum WM1] Length = 393 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 12/58 (20%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+C C +C CP AIT+E+ + C CG+C E CP DAI Sbjct: 8 EKCRGCSICVKNCPFDAITMENKLA------------VIGTACTGCGVCVEKCPFDAI 53 Score = 35.1 bits (79), Expect = 3.8, Method: Composition-based stats. Identities = 9/26 (34%), Positives = 13/26 (50%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGP 122 ++ KC C +C + CP DAI Sbjct: 4 NVIKEKCRGCSICVKNCPFDAITMEN 29 >gi|302336532|ref|YP_003801739.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Olsenella uli DSM 7084] gi|301320372|gb|ADK68859.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Olsenella uli DSM 7084] Length = 302 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 15/66 (22%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L +Y ++C+ C C +C + + ++CI CG C +A Sbjct: 230 LLQYHVDADKCVKCGKCARVCKMD---------------VDITKNSSSLECIRCGECAKA 274 Query: 113 CPVDAI 118 CPV AI Sbjct: 275 CPVKAI 280 >gi|299140591|ref|ZP_07033729.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Prevotella oris C735] gi|298577557|gb|EFI49425.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Prevotella oris C735] Length = 1175 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 23/82 (28%), Gaps = 16/82 (19%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK----- 102 RG A E CI C C CP I G DI K Sbjct: 657 RGVAAFVPVWK-PENCIQCNKCAYSCPHATIRPFVLDEKEKGDFGDETIDILAPKQLKGM 715 Query: 103 ----------CIYCGLCQEACP 114 C+ CG C + CP Sbjct: 716 QFRIQVDVLDCLGCGNCADVCP 737 >gi|294494958|ref|YP_003541451.1| cobyrinic acid ac-diamide synthase [Methanohalophilus mahii DSM 5219] gi|292665957|gb|ADE35806.1| Cobyrinic acid ac-diamide synthase [Methanohalophilus mahii DSM 5219] Length = 285 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 26/72 (36%), Gaps = 14/72 (19%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 AL E C C +C C AI ++ID C CG+C+ Sbjct: 57 ALPTAIIHPELCTGCGICVDHCRFGAIK--------------EGFEIDPYICEGCGVCEY 102 Query: 112 ACPVDAIVEGPN 123 CP DA+ N Sbjct: 103 VCPADAVTMEYN 114 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 10/29 (34%), Positives = 13/29 (44%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 I C CG+C + C AI EG + Sbjct: 63 IHPELCTGCGICVDHCRFGAIKEGFEIDP 91 >gi|284049283|ref|YP_003399622.1| hydrogenase, Fe-only [Acidaminococcus fermentans DSM 20731] gi|283953504|gb|ADB48307.1| hydrogenase, Fe-only [Acidaminococcus fermentans DSM 20731] Length = 576 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 25/90 (27%), Gaps = 3/90 (3%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR- 95 P+E+ R + +CI C C +C G Sbjct: 122 PYEEQLPKGLRRAWTTTYPLFHDYNKCIKCMRCIQVCDKIQAMHIWDVAGTGGRTTVDVS 181 Query: 96 --YDIDMIKCIYCGLCQEACPVDAIVEGPN 123 I C CG C CPV + E + Sbjct: 182 GNRVIKDSDCTLCGQCIIHCPVAGLRERDD 211 >gi|256004881|ref|ZP_05429855.1| Glutamate synthase (NADPH) [Clostridium thermocellum DSM 2360] gi|255991191|gb|EEU01299.1| Glutamate synthase (NADPH) [Clostridium thermocellum DSM 2360] gi|316941044|gb|ADU75078.1| Glutamate synthase (NADPH) [Clostridium thermocellum DSM 1313] Length = 501 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 9/64 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +RCI C++CE C + + + + KC+ C C CP A+ Sbjct: 15 NMDRCINCRVCERQCANEVHSYDQEKKIMCSD---------DSKCVNCHRCVALCPTRAL 65 Query: 119 VEGP 122 Sbjct: 66 KIVK 69 >gi|288940311|ref|YP_003442551.1| RnfABCDGE type electron transport complex subunit B [Allochromatium vinosum DSM 180] gi|288895683|gb|ADC61519.1| electron transport complex, RnfABCDGE type, B subunit [Allochromatium vinosum DSM 180] Length = 189 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 25/75 (33%), Gaps = 10/75 (13%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C C CP AI + + + +C C LC E CPV Sbjct: 104 FIDPELCIGCTRCIQACPVDAIIGAAKQ----------LHAVLNSECTGCELCVEPCPVA 153 Query: 117 AIVEGPNFEFATETR 131 I P E R Sbjct: 154 CITMRPIREDIQRWR 168 >gi|269119596|ref|YP_003307773.1| electron transport complex, RnfABCDGE type, C subunit [Sebaldella termitidis ATCC 33386] gi|268613474|gb|ACZ07842.1| electron transport complex, RnfABCDGE type, C subunit [Sebaldella termitidis ATCC 33386] Length = 438 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 1/59 (1%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + CI C C +CP + ++ G + + ++ CI CG C+ CP Sbjct: 357 DRIERKNCILCGYCSEVCPVYLMPMKFEEFYRKG-KYKKLLEFNLNSCIECGACEYICP 414 Score = 37.0 bits (84), Expect = 0.95, Method: Composition-based stats. Identities = 10/27 (37%), Positives = 12/27 (44%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPN 123 I+ CI CG C E CPV + Sbjct: 358 RIERKNCILCGYCSEVCPVYLMPMKFE 384 >gi|197105161|ref|YP_002130538.1| glutamate synthase (NADPH) small chain [Phenylobacterium zucineum HLK1] gi|196478581|gb|ACG78109.1| glutamate synthase (NADPH) small chain [Phenylobacterium zucineum HLK1] Length = 596 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 26/82 (31%), Gaps = 20/82 (24%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK-------------------- 102 CI C C ICP IT + R ++ + Sbjct: 502 CIECDACVDICPMDCITFTEDGEEDELRGRLKAPALNPEQDLYASGRLGTGRIMVKDEDV 561 Query: 103 CIYCGLCQEACPVDAIVEGPNF 124 C++CGLC E CP A + Sbjct: 562 CLHCGLCAERCPTGAWDMQKFY 583 Score = 34.3 bits (77), Expect = 5.1, Method: Composition-based stats. Identities = 9/23 (39%), Positives = 12/23 (52%) Query: 103 CIYCGLCQEACPVDAIVEGPNFE 125 CI C C + CP+D I + E Sbjct: 502 CIECDACVDICPMDCITFTEDGE 524 >gi|168185418|ref|ZP_02620053.1| MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Clostridium botulinum C str. Eklund] gi|169296260|gb|EDS78393.1| MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Clostridium botulinum C str. Eklund] Length = 285 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 25/150 (16%), Positives = 46/150 (30%), Gaps = 25/150 (16%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG-------EERCIACKLCEAIC 73 + K I+ + + + G+ R G EE C C C+ +C Sbjct: 18 ATAISELAKDVVKIDCDVDAPNLYLFYNGKDIKSRDFCGGKIAEINEELCKNCGKCKKVC 77 Query: 74 PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN--FEFATETR 131 AI+ I+ C CG C CP +AI E Sbjct: 78 RFDAISNNK---------------INPYSCEGCGTCILVCPSNAITLKEEKSAEIYITKT 122 Query: 132 QELYYDKERLLNNGDRWESEIVRNIVTDSP 161 + + ++ + G +++ + D+ Sbjct: 123 DKGIISRAKM-DIGSEGSGKLIAELREDAK 151 >gi|153954756|ref|YP_001395521.1| pyruvate-flavodoxin oxidoreductase [Clostridium kluyveri DSM 555] gi|219855220|ref|YP_002472342.1| hypothetical protein CKR_1877 [Clostridium kluyveri NBRC 12016] gi|146347614|gb|EDK34150.1| Pyruvate-flavodoxin oxidoreductase [Clostridium kluyveri DSM 555] gi|219568944|dbj|BAH06928.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 1169 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 26/89 (29%), Gaps = 16/89 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY 96 A+ ++CI C C +CP +A Sbjct: 677 IAINVPEWQADKCIQCNQCSFVCPHAAIRPVLTNAEELAKAPVGFESKAASGAKGLNFTI 736 Query: 97 DIDMIKCIYCGLCQEACP--VDAIVEGPN 123 + + C CG C + CP A+V P Sbjct: 737 AVSPLDCTGCGNCADICPAKEKALVMKPI 765 Score = 34.3 bits (77), Expect = 5.3, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 11/32 (34%), Gaps = 2/32 (6%) Query: 99 DMIKCIYCGLCQEACPVDAIV--EGPNFEFAT 128 KCI C C CP AI E A Sbjct: 685 QADKCIQCNQCSFVCPHAAIRPVLTNAEELAK 716 >gi|18310047|ref|NP_561981.1| ferredoxin [Clostridium perfringens str. 13] gi|18144726|dbj|BAB80771.1| ferredoxin-like protein [Clostridium perfringens str. 13] Length = 268 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 25/69 (36%), Positives = 27/69 (39%), Gaps = 11/69 (15%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 N CI CKLCE CP AI +E+ ID KC CGLC C Sbjct: 210 IVNKNCSVGCIGCKLCEKNCPNGAIKVENNLAI-----------IDYEKCTSCGLCVSKC 258 Query: 114 PVDAIVEGP 122 P AI Sbjct: 259 PKKAINLRK 267 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 5/78 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCIYCGLCQEAC 113 +C+ACK C +CP I I + + + CI C LC++ C Sbjct: 170 DSSKCVACKACIRVCPQNLIDIIKDDQKVIVNCNSNDSGKIVNKNCSVGCIGCKLCEKNC 229 Query: 114 PVDAIVEGPNFEFATETR 131 P AI N + Sbjct: 230 PNGAIKVENNLAIIDYEK 247 >gi|332667239|ref|YP_004450027.1| formate dehydrogenase subunit alpha [Haliscomenobacter hydrossis DSM 1100] gi|332336053|gb|AEE53154.1| formate dehydrogenase, alpha subunit [Haliscomenobacter hydrossis DSM 1100] Length = 917 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 3/67 (4%) Query: 55 RYPNGEERCIACKLCEAICPA---QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C Q + +G + C+ CG C + Sbjct: 153 YMTSDLSKCILCFRCVRACDEVQGQLVLSVAGRGFESKIVKGFDQSFFESDCVSCGACAQ 212 Query: 112 ACPVDAI 118 ACP AI Sbjct: 213 ACPTSAI 219 >gi|317128027|ref|YP_004094309.1| dihydroorotate dehydrogenase [Bacillus cellulosilyticus DSM 2522] gi|315472975|gb|ADU29578.1| dihydroorotate dehydrogenase family protein [Bacillus cellulosilyticus DSM 2522] Length = 422 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 21/65 (32%), Gaps = 4/65 (6%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + CI C C C + + +GT C+ C LC CP + Sbjct: 336 QINNDVCINCNKCHIACEDASHQCIDMLKDANGTAYLKV---REEDCVGCNLCSIVCPEE 392 Query: 117 -AIVE 120 AI Sbjct: 393 GAISM 397 >gi|300692030|ref|YP_003753025.1| 4Fe-4S ferredoxin, iron-sulphur binding [Ralstonia solanacearum PSI07] gi|299079090|emb|CBJ51752.2| 4Fe-4S ferredoxin, iron-sulphur binding [Ralstonia solanacearum PSI07] Length = 268 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 22/62 (35%), Gaps = 10/62 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ERCI C LC CP AI + + C C LC CPVD I Sbjct: 86 DPERCIGCTLCIQACPVDAIVGAPK----------AMHVVLEDWCTGCDLCVAPCPVDCI 135 Query: 119 VE 120 Sbjct: 136 DM 137 Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats. Identities = 14/21 (66%), Positives = 16/21 (76%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID +CI C LC +ACPVDAI Sbjct: 85 IDPERCIGCTLCIQACPVDAI 105 >gi|282856218|ref|ZP_06265501.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Pyramidobacter piscolens W5455] gi|282585977|gb|EFB91262.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Pyramidobacter piscolens W5455] Length = 1185 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 18/84 (21%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAI---------------TIESGPRCHDGTRR 92 RG + N E+CI C +C +CP AI + E+ + Sbjct: 678 RGTAVMVPEWN-PEKCIQCNMCSFVCPHAAIRPFLLNESEAMNAPESFETVNARGLKNAQ 736 Query: 93 TVRYDIDMI--KCIYCGLCQEACP 114 +++ I + C+ CG C E CP Sbjct: 737 GLKFRIQLSALDCVACGSCAEVCP 760 Score = 35.1 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 9/20 (45%), Positives = 11/20 (55%) Query: 99 DMIKCIYCGLCQEACPVDAI 118 + KCI C +C CP AI Sbjct: 688 NPEKCIQCNMCSFVCPHAAI 707 >gi|224539450|ref|ZP_03679989.1| hypothetical protein BACCELL_04355 [Bacteroides cellulosilyticus DSM 14838] gi|224518955|gb|EEF88060.1| hypothetical protein BACCELL_04355 [Bacteroides cellulosilyticus DSM 14838] Length = 325 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 8/81 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------DMIKCIYCGLCQ 110 E +C AC C CP I I + + CI CG C Sbjct: 169 DEAKCTACGACVKACPKNIIEIRPQGKKSRRIYVQCVNKDKGGIARKACTVACIGCGKCV 228 Query: 111 EACPVDAIVEGPNFEFATETR 131 + CP +AI N + + Sbjct: 229 KVCPFEAITLENNLAYIDPNK 249 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 9/61 (14%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C C C AI + ++D KC CG C +ACP + I P Sbjct: 142 CLGCGDCVEACQFDAIHMNPETGLP---------EVDEAKCTACGACVKACPKNIIEIRP 192 Query: 123 N 123 Sbjct: 193 Q 193 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 11/56 (19%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C C +CP +AIT+E+ ID KC C C+EACP + I Sbjct: 221 CIGCGKCVKVCPFEAITLENNLAY-----------IDPNKCKSCRKCEEACPQNTI 265 >gi|239616580|ref|YP_002939902.1| hydrogenase, Fe-only [Kosmotoga olearia TBF 19.5.1] gi|239505411|gb|ACR78898.1| hydrogenase, Fe-only [Kosmotoga olearia TBF 19.5.1] Length = 584 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 30/89 (33%), Gaps = 7/89 (7%) Query: 59 GEERCIACKLCEAICPAQAITIE---SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 +CI C C C +G H + I CI CG C CPV Sbjct: 142 DMNKCILCGRCGRACKELQGLSILSVAGRGYHSIPVPALGAPIAATDCINCGQCATVCPV 201 Query: 116 DAIVEGPNFEFATETRQELYYDKERLLNN 144 AI E +F E Y E++L Sbjct: 202 GAITERMDFRRVAEE----LYKHEKVLVV 226 >gi|182420402|ref|ZP_02951624.1| sulfite reductase, subunit C [Clostridium butyricum 5521] gi|237667053|ref|ZP_04527037.1| sulfite reductase, subunit C [Clostridium butyricum E4 str. BoNT E BL5262] gi|182375768|gb|EDT73366.1| sulfite reductase, subunit C [Clostridium butyricum 5521] gi|237655401|gb|EEP52957.1| sulfite reductase, subunit C [Clostridium butyricum E4 str. BoNT E BL5262] Length = 325 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 25/78 (32%), Gaps = 8/78 (10%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 G + RC++C C C + ++ S + KCI Sbjct: 155 HDFGIIGMTEPQYDMNRCVSCGACVKACKSLSVGALSVENYRVVRNK--------EKCIG 206 Query: 106 CGLCQEACPVDAIVEGPN 123 CG+C CP A N Sbjct: 207 CGVCVTKCPTRAFTRSKN 224 >gi|167762908|ref|ZP_02435035.1| hypothetical protein BACSTE_01272 [Bacteroides stercoris ATCC 43183] gi|167699248|gb|EDS15827.1| hypothetical protein BACSTE_01272 [Bacteroides stercoris ATCC 43183] Length = 330 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 8/81 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------DMIKCIYCGLCQ 110 E +C AC C CP I I + + CI CG C Sbjct: 169 DESKCTACGACVKACPRNIIEIRPQGKKSRRVYVQCVNKDKGAVARKACTVACIGCGKCV 228 Query: 111 EACPVDAIVEGPNFEFATETR 131 + CP +AI N + + Sbjct: 229 KVCPFEAITLENNLAYIDPNK 249 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 9/61 (14%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C C + C AI + ++D KC CG C +ACP + I P Sbjct: 142 CLGCGDCVSACQFGAIRMNPETGLP---------EVDESKCTACGACVKACPRNIIEIRP 192 Query: 123 N 123 Sbjct: 193 Q 193 Score = 40.5 bits (93), Expect = 0.083, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 11/60 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C C +CP +AIT+E+ ID KC C C+E CP I Sbjct: 217 CTVACIGCGKCVKVCPFEAITLENNLAY-----------IDPNKCKSCRKCEEVCPQGTI 265 >gi|160901870|ref|YP_001567451.1| formate dehydrogenase, alpha subunit [Petrotoga mobilis SJ95] gi|160359514|gb|ABX31128.1| formate dehydrogenase, alpha subunit [Petrotoga mobilis SJ95] Length = 917 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 5/69 (7%) Query: 59 GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDIDM----IKCIYCGLCQEAC 113 ++CI C C C Q T+ + +D D+ C++CG C E C Sbjct: 142 DPDKCILCGKCVRTCKEIQMCNALDFVNRGFETKVSPPFDEDLGGKDSPCVFCGQCVEMC 201 Query: 114 PVDAIVEGP 122 P A+ P Sbjct: 202 PTGALTYIP 210 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 22/75 (29%), Gaps = 9/75 (12%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------- 98 R + C+ C+ GT++ R++I Sbjct: 82 RKTVVDLLVSDHPMDCMTCEANGNCVLQDLAYEYGIKESTFGTKKLPRFEIKAQNEFIQL 141 Query: 99 DMIKCIYCGLCQEAC 113 D KCI CG C C Sbjct: 142 DPDKCILCGKCVRTC 156 >gi|52549636|gb|AAU83485.1| heterodisulfide reductase subunit A and related polyferredoxins [uncultured archaeon GZfos28G7] Length = 907 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 26/70 (37%), Gaps = 6/70 (8%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM------IKCIYCGLCQEA 112 EE C C +CEAICP +AI + P T CI CG C Sbjct: 824 DEEICAGCGVCEAICPVEAIELTEEPVPVVTFGVTTVVGGTKKVAKTGDGCIGCGSCASY 883 Query: 113 CPVDAIVEGP 122 CP A+ Sbjct: 884 CPSGAMSLRN 893 Score = 38.9 bits (89), Expect = 0.23, Method: Composition-based stats. Identities = 10/26 (38%), Positives = 14/26 (53%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPN 123 +D C CG+C+ CPV+AI Sbjct: 823 VDEEICAGCGVCEAICPVEAIELTEE 848 >gi|91773116|ref|YP_565808.1| thiamine pyrophosphate enzyme-like TPP-binding [Methanococcoides burtonii DSM 6242] gi|91712131|gb|ABE52058.1| Protein containing N-terminal Pyruvate flavodoxin/ferredoxin oxidoreductase region, C-terminal TPP-binding region and ferredoxin domain [Methanococcoides burtonii DSM 6242] Length = 601 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 26/73 (35%), Gaps = 11/73 (15%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R L + ++C+ C++C + IE T C CG Sbjct: 537 RTGIRLTPFKVDHDKCVGCRMCVNL---GCPAIEFDKENKKSTINAT--------CTGCG 585 Query: 108 LCQEACPVDAIVE 120 LC E C DAI E Sbjct: 586 LCAEVCKFDAIKE 598 >gi|5678638|gb|AAD46687.1|AF040988_2 ferredoxin type protein NapF [Pseudomonas sp. G-179] gi|3925393|gb|AAC79441.1| ferrodoxin-like protein [Pseudomonas sp. G-179] Length = 166 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 24/88 (27%), Gaps = 7/88 (7%) Query: 35 NYPF-EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93 P HA+ + C+ C +CP AI + Sbjct: 76 RCPERVFPPEPATSFAHHAVIADNCLALNFVDCQACRDVCPTTAIRFKPRLGGPF----- 130 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEG 121 +D C CG C CP +I Sbjct: 131 -VPVLDTDPCTGCGACISVCPTQSITMT 157 Score = 34.7 bits (78), Expect = 4.4, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 2/61 (3%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C C A CP P + + + + C C++ CP AI Sbjct: 66 ECTFCGECSARCPE--RVFPPEPATSFAHHAVIADNCLALNFVDCQACRDVCPTTAIRFK 123 Query: 122 P 122 P Sbjct: 124 P 124 >gi|297539617|ref|YP_003675386.1| formate dehydrogenase subunit alpha [Methylotenera sp. 301] gi|297258964|gb|ADI30809.1| formate dehydrogenase, alpha subunit [Methylotenera sp. 301] Length = 968 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 2/73 (2%) Query: 55 RYPNGEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + +CI C C C + R + D +C+ CG C +A Sbjct: 176 YFTFDPSKCIVCSRCVRACEETQGTFALTISGRGFESKVAAGVTDFMNSECVSCGACVQA 235 Query: 113 CPVDAIVEGPNFE 125 CP ++E E Sbjct: 236 CPTATLIEKTVIE 248 >gi|264679976|ref|YP_003279885.1| formate dehydrogenase, subunit alpha [Comamonas testosteroni CNB-2] gi|262210491|gb|ACY34589.1| formate dehydrogenase, alpha subunit [Comamonas testosteroni CNB-2] Length = 971 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 23/82 (28%), Gaps = 3/82 (3%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T SG C+ CG C + Sbjct: 164 YFNYDPSKCIVCNRCVRACEETQGTFALTISGRGFESRITAGQGDGFMASDCVSCGACVQ 223 Query: 112 ACPVDAIVEGPNFEFATETRQE 133 ACP + E E E Sbjct: 224 ACPTATLQEKTVVELGQSEHSE 245 >gi|189466149|ref|ZP_03014934.1| hypothetical protein BACINT_02519 [Bacteroides intestinalis DSM 17393] gi|189434413|gb|EDV03398.1| hypothetical protein BACINT_02519 [Bacteroides intestinalis DSM 17393] Length = 324 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 8/81 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------DMIKCIYCGLCQ 110 E +C AC C CP I I + + CI CG C Sbjct: 169 DEAKCTACGACAKACPKNIIEIRPQGKKSRRVYVQCVNKDKGAVARKACTVACIGCGKCV 228 Query: 111 EACPVDAIVEGPNFEFATETR 131 + CP +AI N + + Sbjct: 229 KVCPFEAITLENNLAYIDPNK 249 Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 9/61 (14%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C C C AI + ++D KC CG C +ACP + I P Sbjct: 142 CLGCGDCVEACQFDAIHMNPETGLP---------EVDEAKCTACGACAKACPKNIIEIRP 192 Query: 123 N 123 Sbjct: 193 Q 193 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 11/60 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C C +CP +AIT+E+ ID KC C C+E CP + I Sbjct: 217 CTVACIGCGKCVKVCPFEAITLENNLAY-----------IDPNKCKSCRKCEEVCPQNTI 265 >gi|113866669|ref|YP_725158.1| NAD-dependent formate dehydrogenase alpha subunit [Ralstonia eutropha H16] gi|113525445|emb|CAJ91790.1| NAD-dependent formate dehydrogenase alpha subunit [Ralstonia eutropha H16] Length = 959 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 24/89 (26%), Gaps = 4/89 (4%) Query: 37 PFEKGSTSPRFRGEHALRRYP-NGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRR 92 P + + Y +CI C C C T SG Sbjct: 146 PEAAPIATHTQMKKDESNPYFTYDPSKCIVCNRCVRACEETQGTFALTISGRGFDSRVSP 205 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C+ CG C +ACP + E Sbjct: 206 GTSQSFMESDCVSCGACVQACPTATLTET 234 >gi|158320026|ref|YP_001512533.1| hydrogenase, Fe-only [Alkaliphilus oremlandii OhILAs] gi|158140225|gb|ABW18537.1| hydrogenase, Fe-only [Alkaliphilus oremlandii OhILAs] Length = 567 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 5/69 (7%) Query: 59 GEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 +CI C C +C A++ + DI + C+ CG C+ CP Sbjct: 142 NPNKCILCGDCVRVCEEMQGVGALSF-AYRGSSMTVTPAFNRDIAEVNCVNCGQCRNVCP 200 Query: 115 VDAIVEGPN 123 AI+ Sbjct: 201 TGAIIIKNE 209 >gi|3127055|gb|AAC38452.1| TutE [Thauera aromatica] Length = 375 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 6/74 (8%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 + + + Y +RC++C C +CP A + GP + +D Sbjct: 75 RCPWCHNPETQKVGKEYYYNRDRCVSCGRCATVCPTGASQLLDGPGASQVLK------LD 128 Query: 100 MIKCIYCGLCQEAC 113 KCI C C C Sbjct: 129 RSKCINCMRCVAVC 142 Score = 37.8 bits (86), Expect = 0.54, Method: Composition-based stats. Identities = 8/42 (19%), Positives = 13/42 (30%) Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + + Y + +C+ CG C CP A Sbjct: 71 GCPLRCPWCHNPETQKVGKEYYYNRDRCVSCGRCATVCPTGA 112 >gi|85859240|ref|YP_461442.1| heterodisulfide reductase subunit A [Syntrophus aciditrophicus SB] gi|85722331|gb|ABC77274.1| heterodisulfide reductase, subunit A [Syntrophus aciditrophicus SB] Length = 939 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 20/88 (22%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+RC+ C C ++C AI + + + ++ + C GLC CP AI Sbjct: 860 DEKRCMGCGACASVCTYGAIEMRETKQG-------RKATMNPVLCKGDGLCNAMCPTGAI 912 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGD 146 Y ++ LL D Sbjct: 913 SLRH-------------YTEDELLAQID 927 Score = 33.9 bits (76), Expect = 6.9, Method: Composition-based stats. Identities = 8/26 (30%), Positives = 12/26 (46%) Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVE 120 ++D +C+ CG C C AI Sbjct: 856 VCEVDEKRCMGCGACASVCTYGAIEM 881 >gi|85858318|ref|YP_460520.1| heterodisulfide reductase subunit A [Syntrophus aciditrophicus SB] gi|85721409|gb|ABC76352.1| heterodisulfide reductase, subunit A [Syntrophus aciditrophicus SB] Length = 939 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 32/88 (36%), Gaps = 20/88 (22%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+RC+ C C ++C AI + + + ++ + C GLC CP AI Sbjct: 860 DEKRCMGCGACASVCTYGAIEMRETKQG-------RKATMNPVLCKGDGLCNAMCPTGAI 912 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGD 146 Y ++ LL D Sbjct: 913 SLRH-------------YTEDELLAQID 927 Score = 33.9 bits (76), Expect = 6.9, Method: Composition-based stats. Identities = 8/26 (30%), Positives = 12/26 (46%) Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVE 120 ++D +C+ CG C C AI Sbjct: 856 VCEVDEKRCMGCGACASVCTYGAIEM 881 >gi|56696653|ref|YP_167014.1| dihydropyrimidine dehydrogenase [Ruegeria pomeroyi DSS-3] gi|56678390|gb|AAV95056.1| dihydroorotate dehydrogenase family protein [Ruegeria pomeroyi DSS-3] Length = 434 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 8/78 (10%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + +++CI C C A C E +++ +C+ Sbjct: 330 QYLNLNYVAKAKIDQDQCIKCGRCYAAC-------EDTSHQAISMSEDRVFEVMDDECVA 382 Query: 106 CGLCQEACP-VDAIVEGP 122 C LC + CP I P Sbjct: 383 CNLCVDVCPIDGCISMVP 400 >gi|46580807|ref|YP_011615.1| heterodisulfide reductase subunit A [Desulfovibrio vulgaris str. Hildenborough] gi|120601876|ref|YP_966276.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfovibrio vulgaris DP4] gi|46450227|gb|AAS96875.1| heterodisulfide reductase, A subunit [Desulfovibrio vulgaris str. Hildenborough] gi|120562105|gb|ABM27849.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Desulfovibrio vulgaris DP4] gi|311234513|gb|ADP87367.1| FAD dependent oxidoreductase [Desulfovibrio vulgaris RCH1] Length = 652 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 21/64 (32%), Gaps = 7/64 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RCI C C CP AI R + + C CG+C CP AI Sbjct: 580 DVRRCIGCGKCITTCPYGAIEWME-------LRGETKARVIETVCQGCGICTVTCPQGAI 632 Query: 119 VEGP 122 Sbjct: 633 QLQH 636 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 25/87 (28%), Gaps = 13/87 (14%) Query: 57 PNGEERCIACKLCEAICPA----QAITIE----SGPRCHDGTRRTVRYDIDMIKCI---- 104 + C C LC CP+ A + + ID C Sbjct: 236 YVDWDLCTGCGLCMEKCPSRKSPDAFNEHVGVTTAINIPFPQAIPKKAIIDPTACRQFVK 295 Query: 105 -YCGLCQEACPVDAIVEGPNFEFATET 130 CG+C + CP AI E E Sbjct: 296 GKCGVCAKMCPTGAIRYDMEDEIVVED 322 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 3/39 (7%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 +D+ +CI CG C CP AI E ET+ + Sbjct: 578 QVDVRRCIGCGKCITTCPYGAIEW---MELRGETKARVI 613 >gi|41615088|ref|NP_963586.1| putative ATPase RIL [Nanoarchaeum equitans Kin4-M] gi|40068812|gb|AAR39147.1| NEQ299 [Nanoarchaeum equitans Kin4-M] Length = 574 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 24/76 (31%), Gaps = 3/76 (3%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 +R +C C C +G + + ID CI CGLC Sbjct: 1 MIQMRIAIIDRTKCKP-NKCNYECYNFCPLNRAGKK--CIEIIDGKPVIDESICIGCGLC 57 Query: 110 QEACPVDAIVEGPNFE 125 + CP AI E Sbjct: 58 VKKCPFKAIKIINVPE 73 >gi|15837149|ref|NP_297837.1| ferredoxin [Xylella fastidiosa 9a5c] gi|9105406|gb|AAF83357.1|AE003902_2 ferredoxin II [Xylella fastidiosa 9a5c] Length = 159 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 25/83 (30%), Gaps = 10/83 (12%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 + + E CI C C CP AI + + + Sbjct: 86 PRPYDRSHGTQQQPQVAWIVEADCIGCTKCIQACPVDAIIGGAK----------HMHTVI 135 Query: 100 MIKCIYCGLCQEACPVDAIVEGP 122 C C LC ACPVD I P Sbjct: 136 AALCTGCELCVPACPVDCIELHP 158 >gi|262066053|ref|ZP_06025665.1| putative 4Fe-4S binding domain protein [Fusobacterium periodonticum ATCC 33693] gi|291380303|gb|EFE87821.1| putative 4Fe-4S binding domain protein [Fusobacterium periodonticum ATCC 33693] Length = 206 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 11/58 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++CI C C +CP I +S P Y I+ C++CG C CPV A+ Sbjct: 157 DKCIGCNKCVEVCPQNCIITDSVP-----------YVIEQNHCLHCGNCFTVCPVGAV 203 >gi|46581428|ref|YP_012236.1| pyruvate-ferredoxin oxidoreductase [Desulfovibrio vulgaris str. Hildenborough] gi|120601398|ref|YP_965798.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [Desulfovibrio vulgaris DP4] gi|46450850|gb|AAS97496.1| pyruvate-ferredoxin oxidoreductase [Desulfovibrio vulgaris str. Hildenborough] gi|120561627|gb|ABM27371.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Desulfovibrio vulgaris DP4] gi|311235084|gb|ADP87938.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfovibrio vulgaris RCH1] Length = 1215 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 43/122 (35%), Gaps = 36/122 (29%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAI------------------TIESGPRCHDGTRR 92 A+ E CI C C +CP AI TI++ + +G + Sbjct: 676 VAINVPEWLSENCIQCNQCSFVCPHAAIRPVLATTEELEGAPASFVTIDAKGKELNGLKY 735 Query: 93 TVRYDIDMIKCIYCGLCQEACPV--DAIVE----------GPNFEFATETRQELYYDKER 140 R + C+ CG C E CP A+V PN FA +E K+ Sbjct: 736 --RIQVFAQDCLGCGSCAEVCPAKNKALVMKPIETQLDAQVPNLAFA----EENIAIKDD 789 Query: 141 LL 142 L+ Sbjct: 790 LM 791 >gi|15806869|ref|NP_295592.1| polyferredoxin [Deinococcus radiodurans R1] gi|6459648|gb|AAF11421.1|AE002026_9 polyferredoxin, putative [Deinococcus radiodurans R1] Length = 334 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 25/77 (32%), Positives = 32/77 (41%), Gaps = 11/77 (14%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI-- 118 + CI C +C +CP QAIT P VR +D+ C C C +CP AI Sbjct: 259 DSCIDCPVCANVCPTQAITRNLQPEGG------VRLLLDLSACTGCMACLRSCPPQAIHE 312 Query: 119 ---VEGPNFEFATETRQ 132 P FE R+ Sbjct: 313 QRQWLSPAFELPILLRE 329 Score = 42.4 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 9/53 (16%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C +C CP +A+T+ +G +ID +C CGLC ++CP A+ Sbjct: 34 CAVCVDACPHEAVTVNAGGYAV---------EIDPERCTGCGLCVQSCPSGAL 77 >gi|148266186|ref|YP_001232892.1| sigma-54 dependent trancsriptional regulator [Geobacter uraniireducens Rf4] gi|146399686|gb|ABQ28319.1| sigma54 specific transcriptional regulator, Fis family [Geobacter uraniireducens Rf4] Length = 755 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 11/62 (17%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E+C C C CP +AI +E +I +CI CG C CP A V Sbjct: 9 EKCRKCYSCVRSCPVKAIKVEKN-----------YSEIIFERCIGCGNCLSNCPQHAKVV 57 Query: 121 GP 122 Sbjct: 58 TD 59 Score = 35.5 bits (80), Expect = 2.6, Method: Composition-based stats. Identities = 10/24 (41%), Positives = 12/24 (50%) Query: 101 IKCIYCGLCQEACPVDAIVEGPNF 124 KC C C +CPV AI N+ Sbjct: 9 EKCRKCYSCVRSCPVKAIKVEKNY 32 >gi|299531430|ref|ZP_07044838.1| formate dehydrogenase, alpha subunit [Comamonas testosteroni S44] gi|298720593|gb|EFI61542.1| formate dehydrogenase, alpha subunit [Comamonas testosteroni S44] Length = 971 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 23/82 (28%), Gaps = 3/82 (3%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T SG C+ CG C + Sbjct: 164 YFNYDPSKCIVCNRCVRACEETQGTFALTISGRGFESRITAGQGDGFMASDCVSCGACVQ 223 Query: 112 ACPVDAIVEGPNFEFATETRQE 133 ACP + E E E Sbjct: 224 ACPTATLQEKTVVELGQSEHSE 245 >gi|298675844|ref|YP_003727594.1| RnfABCDGE type electron transport complex subunit C [Methanohalobium evestigatum Z-7303] gi|298288832|gb|ADI74798.1| electron transport complex, RnfABCDGE type, C subunit [Methanohalobium evestigatum Z-7303] Length = 453 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 31/83 (37%), Gaps = 3/83 (3%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T P K +T + E L Y CI C C ICP + + G R Sbjct: 332 YTDEVPVIKTTTGITIQTEDELPVY--NTYPCIHCTKCVDICPMELVPSRLAILADQG-R 388 Query: 92 RTVRYDIDMIKCIYCGLCQEACP 114 ++ ++ CI CG C CP Sbjct: 389 FDECREMHVMNCIECGRCAAICP 411 >gi|288554818|ref|YP_003426753.1| dihydropyrimidine dehydrogenase subunit B [Bacillus pseudofirmus OF4] gi|288545978|gb|ADC49861.1| dihydropyrimidine dehydrogenase [Bacillus pseudofirmus OF4] Length = 428 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 20/65 (30%), Gaps = 4/65 (6%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + CI C C C + + G C+ C LC CPVD Sbjct: 336 QINNDVCINCNKCHIACEDTSHQCIDMLKDDRGNDILKV---REDDCVGCNLCSIVCPVD 392 Query: 117 -AIVE 120 AI Sbjct: 393 GAIDM 397 >gi|260891376|ref|ZP_05902639.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Leptotrichia hofstadii F0254] gi|260858759|gb|EEX73259.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Leptotrichia hofstadii F0254] Length = 1142 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 21/113 (18%), Positives = 34/113 (30%), Gaps = 28/113 (24%) Query: 57 PNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRRTV-----------RYDIDM 100 + CI C C +CP I E + +G + + Sbjct: 686 EWQPDMCIQCNQCAYVCPHAVIRPFLLDEEEMKKAPEGMPTIKALGRGMDGLEYKIQVSP 745 Query: 101 IKCIYCGLCQEACPVD---AIVE--------GPNFEFATETRQELYYDKERLL 142 + C C C + CP AIV E+ + Y K+++L Sbjct: 746 LDCTGCSACVDVCPAPRGKAIVMKSTQSQIERNEIEYTDYLFNNVSY-KDKIL 797 >gi|322417935|ref|YP_004197158.1| electron transfer flavoprotein alpha/beta-subunit [Geobacter sp. M18] gi|320124322|gb|ADW11882.1| Electron transfer flavoprotein alpha/beta-subunit [Geobacter sp. M18] Length = 447 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 11/60 (18%) Query: 62 RCI-ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 RCI C CE+ CP AI + + KCI C C +ACP +A+ Sbjct: 19 RCIACCARCESSCPVDAIAMNPAGEP----------QVATEKCIGCVKCVKACPAEALEM 68 >gi|223985255|ref|ZP_03635337.1| hypothetical protein HOLDEFILI_02643 [Holdemania filiformis DSM 12042] gi|223962767|gb|EEF67197.1| hypothetical protein HOLDEFILI_02643 [Holdemania filiformis DSM 12042] Length = 243 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 22/92 (23%), Positives = 30/92 (32%), Gaps = 17/92 (18%) Query: 31 KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT 90 T P ++ +R AL P RC+ C C +CP QAI Sbjct: 145 PMTSPVPGQRP-----YRKITALPLKPQTNSRCLRCGRCAVVCPVQAIDPAQPRLTDK-- 197 Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 +C+ C C + CP A P Sbjct: 198 ----------TRCVSCTACIQVCPAGARQFPP 219 >gi|84490228|ref|YP_448460.1| hypothetical protein Msp_1447 [Methanosphaera stadtmanae DSM 3091] gi|84373547|gb|ABC57817.1| EhbK [Methanosphaera stadtmanae DSM 3091] Length = 451 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 32/91 (35%), Gaps = 10/91 (10%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93 I P + + + C+ C +C C +AI + Sbjct: 367 IYCPVNAIPKTSPLKMKIQSGYSMINNNLCVGCGVCIDACVFKAIAPDEEGNLK------ 420 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 ID +CIYCG C+ ACP AI +F Sbjct: 421 ----IDNNRCIYCGACKTACPARAIKIQRDF 447 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 26/67 (38%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 Y ++C C C CP AI + V D MI CI C +C +ACP Sbjct: 180 YQVDMKKCALCYKCLIECPNDAIIEKDFELEIQQPEYDVENDTKMIGCIDCKVCADACPT 239 Query: 116 DAIVEGP 122 + + Sbjct: 240 NGLQIIN 246 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 10/56 (17%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C CE +CP +AI + Y +D KC CG+C CPV I Sbjct: 33 CITCGKCEKVCPNKAIFKN----------KFGGYVVDRTKCNLCGMCMNVCPVSVI 78 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 22/70 (31%), Gaps = 2/70 (2%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--DMIKCIYCGLCQE 111 + C C +C CP A R ++ + CI CG C Sbjct: 80 VKDGKIMGLCSNCGVCVPACPNNARMAPPKRPVQMEKEMVNRINVGTNHDDCIECGRCAY 139 Query: 112 ACPVDAIVEG 121 CP ++I Sbjct: 140 FCPTNSIKFS 149 Score = 37.4 bits (85), Expect = 0.66, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 3/65 (4%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++C+ C+ C CP AI S + + ++ I+ C+ CG+C +AC AI Sbjct: 355 NFDKCVLCEKCGIYCPVNAIPKTSPLKMKIQSGYSM---INNNLCVGCGVCIDACVFKAI 411 Query: 119 VEGPN 123 Sbjct: 412 APDEE 416 Score = 37.4 bits (85), Expect = 0.70, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 10/60 (16%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C C C A + + +CI CG+C E CP DA+ Sbjct: 300 CVGCGGCIPECKYGARKFGNTSWNGE----------IGAQCIKCGICVEVCPKDALTIED 349 Score = 37.0 bits (84), Expect = 0.77, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 11/67 (16%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 +CI C +C +CP A+TIE ++ KC+ C C CP Sbjct: 322 WNGEIGAQCIKCGICVEVCPKDALTIEDKEV-----------KLNFDKCVLCEKCGIYCP 370 Query: 115 VDAIVEG 121 V+AI + Sbjct: 371 VNAIPKT 377 Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 15/60 (25%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI C C CP +I I+ C C C + CP +AI Sbjct: 127 NHDDCIECGRCAYFCPTNSIKFS---------------YIEPGVCTKCDTCIDVCPRNAI 171 >gi|56696440|ref|YP_166797.1| formate dehydrogenase, alpha subunit [Ruegeria pomeroyi DSS-3] gi|56678177|gb|AAV94843.1| formate dehydrogenase, alpha subunit [Ruegeria pomeroyi DSS-3] Length = 926 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 10/87 (11%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114 + CI C LC C + + G V +D + C+ CG C +ACP Sbjct: 150 NLDACINCNLCVRACR-EVQVNDVIGMAGRGAGAQVVFDQNDPMGASTCVACGECVQACP 208 Query: 115 VDAIVEGP--NFEFATETRQELYYDKE 139 A++ + E A +++ YD+E Sbjct: 209 TGALMPATVLDAEQAGDSKD---YDRE 232 >gi|116749279|ref|YP_845966.1| putative PAS/PAC sensor protein [Syntrophobacter fumaroxidans MPOB] gi|116698343|gb|ABK17531.1| putative PAS/PAC sensor protein [Syntrophobacter fumaroxidans MPOB] Length = 572 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 15/84 (17%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 C C C CP +AI +E+ + C+ CG C E CP Sbjct: 9 FTERTECQDCFKCIRECPVKAIKVENACAA-----------VIPQLCVLCGHCVEVCPNG 57 Query: 117 AIVEGPNFEFATETRQELYYDKER 140 A + E A ++L +K++ Sbjct: 58 AKHVRDDLEQA----RQLLKEKDQ 77 >gi|330835350|ref|YP_004410078.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Metallosphaera cuprina Ar-4] gi|329567489|gb|AEB95594.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Metallosphaera cuprina Ar-4] Length = 749 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 3/78 (3%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 K ++++ +C+ C C C A +T + R V + Sbjct: 291 ENKVKVPKY---ANSIKVEYEESLKCVNCGKCLDSCLAYNLTRDFARSPPGKFSRLVTEE 347 Query: 98 IDMIKCIYCGLCQEACPV 115 C C CQEACPV Sbjct: 348 TAFEPCFGCMNCQEACPV 365 >gi|294626911|ref|ZP_06705502.1| ferredoxin II [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|294665011|ref|ZP_06730320.1| ferredoxin II [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292598771|gb|EFF42917.1| ferredoxin II [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292605230|gb|EFF48572.1| ferredoxin II [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 142 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 31/85 (36%), Gaps = 11/85 (12%) Query: 39 EKGSTSPRFRGEHAL-RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 R RG H L + E CI C C CP AI G + + Sbjct: 66 VPPRPYDRSRGAHKLPQVAWIVEADCIGCTKCIQACPVDAIV---------GGAKHMHTV 116 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 I + C C LC ACPVD I P Sbjct: 117 IAPL-CTGCELCLPACPVDCIELHP 140 >gi|255524868|ref|ZP_05391817.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium carboxidivorans P7] gi|255511438|gb|EET87729.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium carboxidivorans P7] Length = 295 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 25/77 (32%), Gaps = 9/77 (11%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + +C+ C C +C + S CI+C C CP AI Sbjct: 212 DQNKCMKCGKCTKVCSVCHLQQNSTK---------SIIKNMNSDCIHCFNCVLECPTKAI 262 Query: 119 VEGPNFEFATETRQELY 135 + E A +++ Sbjct: 263 TLVGDLEKAKGFMEKMI 279 Score = 33.5 bits (75), Expect = 8.7, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 14/33 (42%) Query: 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 +R + ID KC+ CG C + C V Sbjct: 197 KEKVWHEKRYPKITIDQNKCMKCGKCTKVCSVC 229 >gi|241765807|ref|ZP_04763747.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidovorax delafieldii 2AN] gi|241364289|gb|EER59444.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidovorax delafieldii 2AN] Length = 83 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 2/62 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +RC C C AICP ++++ G +R V +D C C LC CP AI Sbjct: 10 NPDRCTGCGWCVAICPPHVLSLQGQGDGRWGPKRAVLHD--AAGCTGCALCDVRCPFGAI 67 Query: 119 VE 120 Sbjct: 68 AM 69 >gi|229591377|ref|YP_002873496.1| dihydropyrimidine dehydrogenase [Pseudomonas fluorescens SBW25] gi|229363243|emb|CAY50336.1| putative dihydropyrimidine dehydrogenase [Pseudomonas fluorescens SBW25] Length = 424 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 4/66 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117 +E CI C C C + + + DGT + Y++ +C+ C LCQ CPV D Sbjct: 341 DQEACIGCGRCHIACEDTSHQAIASLKQADGTHQ---YEVIDDECVGCNLCQITCPVADC 397 Query: 118 IVEGPN 123 I P Sbjct: 398 IEMVPI 403 >gi|226323625|ref|ZP_03799143.1| hypothetical protein COPCOM_01400 [Coprococcus comes ATCC 27758] gi|225207809|gb|EEG90163.1| hypothetical protein COPCOM_01400 [Coprococcus comes ATCC 27758] Length = 621 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 36/98 (36%), Gaps = 9/98 (9%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 TT+ + K F +R +CI C C +C ++ + + GT+ Sbjct: 118 TTVRFENTKEQYPLDFSSPSIVR----DPNKCILCGDCVRMCD-NVQSVNAIDFAYRGTK 172 Query: 92 RTVRY----DIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 V I C+ CG C+ CP AI N E Sbjct: 173 ALVTPAFNKKIAETDCVNCGQCRVVCPTGAISINTNIE 210 >gi|171060402|ref|YP_001792751.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein [Leptothrix cholodnii SP-6] gi|170777847|gb|ACB35986.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Leptothrix cholodnii SP-6] Length = 743 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 24/73 (32%), Gaps = 9/73 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +RC C C CP A+ + C+ CGLC CP DAI Sbjct: 605 DTQRCTMCLSCVGACPESALADNPERPQLRFIEKN---------CVQCGLCASTCPEDAI 655 Query: 119 VEGPNFEFATETR 131 P A R Sbjct: 656 QLQPRLLLADGGR 668 Score = 38.2 bits (87), Expect = 0.45, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 14/30 (46%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 ID+ C C C +ACP AI + A Sbjct: 206 IDLDLCTRCNACIDACPEGAIDFSYQVDLA 235 Score = 37.0 bits (84), Expect = 0.79, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 16/93 (17%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR------ 95 FR + L + E+ I C C +C A+AI ++ + R Sbjct: 312 EKPRFFRYQPKLCAHSRNEQ--IGCSACIYVCSARAIRSDASQKGKTQGRGPRPAGVAAM 369 Query: 96 --------YDIDMIKCIYCGLCQEACPVDAIVE 120 ++ C+ CG C CP A+ Sbjct: 370 PVAASGGGIVVEPHLCVGCGACSTVCPSGALTF 402 >gi|220915362|ref|YP_002490666.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219953216|gb|ACL63600.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 1200 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 34/130 (26%), Gaps = 27/130 (20%) Query: 31 KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG- 89 +P TS + AL CI C C ICP AI + G Sbjct: 668 PVDGTWP---TGTSKWEKRSIALEIPVWEPSLCIQCNKCALICPHAAIRPKFYGAEALGS 724 Query: 90 -------------TRRTVRY--DIDMIKCIYCGLCQEACP--------VDAIVEGPNFEF 126 + +Y + C C LC E CP AI Sbjct: 725 APKGFLAMDYKSADVKGAKYSLQVAPDDCTGCTLCVEICPAESKTEKGKKAINMAEAMPL 784 Query: 127 ATETRQELYY 136 + R + Sbjct: 785 KEKERANFEF 794 >gi|163760125|ref|ZP_02167208.1| putative NAD-dependent formate dehydrogenase alpha subunit [Hoeflea phototrophica DFL-43] gi|162282524|gb|EDQ32812.1| putative NAD-dependent formate dehydrogenase alpha subunit [Hoeflea phototrophica DFL-43] Length = 961 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 16/86 (18%), Positives = 25/86 (29%), Gaps = 3/86 (3%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDM 100 + + + +CI C C C T G + Sbjct: 159 PKYMPKDESNPYFTYDPSKCIVCSRCVRACEEVQGTFALTIEGRGFESRVSPGMHESFMN 218 Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEF 126 +C+ CG C +ACP + E E Sbjct: 219 SECVSCGACVQACPTATLQEKSVIEI 244 Score = 34.3 bits (77), Expect = 6.3, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 24/88 (27%), Gaps = 23/88 (26%) Query: 48 RGEHALRRYPNGEERCIAC---KLCEAICPAQA-------------------ITIESGPR 85 RG L + C+ C CE A A E+ P+ Sbjct: 102 RGVMEL-YISDHPLDCLTCAANGDCELQDMAGAVGLRDVRYGYEGENHVQARHNGEANPK 160 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + D KCI C C AC Sbjct: 161 YMPKDESNPYFTYDPSKCIVCSRCVRAC 188 >gi|197120650|ref|YP_002132601.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Anaeromyxobacter sp. K] gi|196170499|gb|ACG71472.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Anaeromyxobacter sp. K] Length = 1200 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 34/130 (26%), Gaps = 27/130 (20%) Query: 31 KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG- 89 +P TS + AL CI C C ICP AI + G Sbjct: 668 PVDGTWP---TGTSKWEKRSIALEIPVWEPSLCIQCNKCALICPHAAIRPKFYGAEALGS 724 Query: 90 -------------TRRTVRY--DIDMIKCIYCGLCQEACP--------VDAIVEGPNFEF 126 + +Y + C C LC E CP AI Sbjct: 725 APKGFLAMDYKSADVKGAKYSLQVAPDDCTGCTLCVEICPAESKTEKGKKAINMAEAMPL 784 Query: 127 ATETRQELYY 136 + R + Sbjct: 785 KEKERANFEF 794 >gi|145218852|ref|YP_001129561.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Prosthecochloris vibrioformis DSM 265] gi|145205016|gb|ABP36059.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Chlorobium phaeovibrioides DSM 265] Length = 522 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 31/85 (36%), Gaps = 16/85 (18%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 EKGS R LR E C+ ICP +A+ +R Sbjct: 41 EKGSFPDTRRYFTVLRCNHCEEPPCV------DICPVEALHKRDDGIVDFDSR------- 87 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPN 123 +CI C C +ACP +A+ P Sbjct: 88 ---RCIGCKACAQACPYNAVYIDPE 109 Score = 40.9 bits (94), Expect = 0.065, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 7/75 (9%) Query: 56 YPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTRRTVRYDIDMIKCIYCGL-- 108 + +CI C C C ++ G+ R +++C +C Sbjct: 5 FVIDGRKCIGCHACSVACKSENQVPLGVNRTWVKYVEKGSFPDTRRYFTVLRCNHCEEPP 64 Query: 109 CQEACPVDAIVEGPN 123 C + CPV+A+ + + Sbjct: 65 CVDICPVEALHKRDD 79 Score = 40.1 bits (92), Expect = 0.094, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 24/71 (33%), Gaps = 4/71 (5%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RCI CK C CP A+ I+ +K C CP AI Sbjct: 85 DSRRCIGCKACAQACPYNAVYIDPESGTTAKCSYCSHRVEIGMK----PACAVICPQQAI 140 Query: 119 VEGPNFEFATE 129 V G + +E Sbjct: 141 VSGDLDDPHSE 151 >gi|160899056|ref|YP_001564638.1| RnfABCDGE type electron transport complex subunit B [Delftia acidovorans SPH-1] gi|160364640|gb|ABX36253.1| electron transport complex, RnfABCDGE type, B subunit [Delftia acidovorans SPH-1] Length = 238 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 24/81 (29%), Gaps = 10/81 (12%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 S E E CI C LC CP AI + + + Sbjct: 71 PLSAEHGTEAPRTVAVIDEAWCIGCTLCIKACPTDAILGANK----------FMHTVIAA 120 Query: 102 KCIYCGLCQEACPVDAIVEGP 122 C C LC CPVD I Sbjct: 121 HCTGCELCIPVCPVDCIELHN 141 >gi|83589306|ref|YP_429315.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica ATCC 39073] gi|83572220|gb|ABC18772.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Moorella thermoacetica ATCC 39073] Length = 848 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 23/68 (33%), Gaps = 10/68 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY----CGLCQEACP 114 ++C C C CPA AI Y +D C+ C C ACP Sbjct: 105 DWQKCDHCGRCREACPAGAI------LPPHPRGLPRAYRLDHSCCLRAKEDCQACVAACP 158 Query: 115 VDAIVEGP 122 AI P Sbjct: 159 RAAIELEP 166 Score = 41.2 bits (95), Expect = 0.049, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 13/62 (20%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C AC C CP A+ ++ + C CG+C CP A+ P Sbjct: 784 CAACLTCVRTCPHGAMVVQGKAL------------VRTRSCQGCGICVAECPAHALEL-P 830 Query: 123 NF 124 + Sbjct: 831 EY 832 Score = 39.7 bits (91), Expect = 0.12, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 27/85 (31%), Gaps = 15/85 (17%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR---------------RT 93 G L E C C +C + +T G R Sbjct: 40 GGRWLDYGCKAGEDCSRCNICLGFPLLEEVTSRENITLVTGMVVVGVTGTTGAFTASLRA 99 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAI 118 ID KC +CG C+EACP AI Sbjct: 100 TGPRIDWQKCDHCGRCREACPAGAI 124 >gi|150391071|ref|YP_001321120.1| indolepyruvate ferredoxin oxidoreductase [Alkaliphilus metalliredigens QYMF] gi|149950933|gb|ABR49461.1| Indolepyruvate ferredoxin oxidoreductase [Alkaliphilus metalliredigens QYMF] Length = 604 Score = 45.5 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 6/75 (8%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R + + CI+C+ C ++ ID C+ C Sbjct: 529 RYNLEKPYFYVDPKICISCRACIR------TNCPPLRMIEYEGIEKLKSSIDKDMCVGCS 582 Query: 108 LCQEACPVDAIVEGP 122 +C + CPV+AI Sbjct: 583 VCAQVCPVNAIKSSK 597 >gi|315186948|gb|EFU20706.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Spirochaeta thermophila DSM 6578] Length = 583 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 31/84 (36%), Gaps = 7/84 (8%) Query: 59 GEERCIACKLCEAICPAQAITIE-SGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115 +C+ C C +C + DGTR DI + CI CG C CPV Sbjct: 144 DPSKCVKCGRCVNVCQSMQNVWALEFLGRGDGTRIAPAGDIALNDSPCIKCGQCSAHCPV 203 Query: 116 DAIVEGPNFEFATETRQELYYDKE 139 AI E + T E D E Sbjct: 204 GAIYEKDD----TRKVWEAIMDPE 223 >gi|315917799|ref|ZP_07914039.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC 25563] gi|313691674|gb|EFS28509.1| conserved hypothetical protein [Fusobacterium gonidiaformans ATCC 25563] Length = 316 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 28/92 (30%), Gaps = 11/92 (11%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 P K T + CI C +C+ CP AI + + Sbjct: 189 KSVIAMTPVAKKVTVKCMSKDKGGDAKKACGIACIGCGMCQRTCPFGAIEVSNNLA---- 244 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 ID KC C LC CP AI G Sbjct: 245 -------KIDPAKCKNCQLCVVVCPTKAIYTG 269 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 5/70 (7%) Query: 59 GEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIK---CIYCGLCQEAC 113 EE CI+C LC CP A+T + + D CI CG+CQ C Sbjct: 173 DEEACISCGLCVKACPKSVIAMTPVAKKVTVKCMSKDKGGDAKKACGIACIGCGMCQRTC 232 Query: 114 PVDAIVEGPN 123 P AI N Sbjct: 233 PFGAIEVSNN 242 Score = 42.4 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 10/67 (14%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 + + C+ CE +CP AI + +D CI CGLC +ACP Sbjct: 140 DKSCKYGCLGYGDCERVCPVGAIVVNEKGIAS----------VDEEACISCGLCVKACPK 189 Query: 116 DAIVEGP 122 I P Sbjct: 190 SVIAMTP 196 >gi|302671546|ref|YP_003831506.1| aldo/keto reductase family oxidoreductase [Butyrivibrio proteoclasticus B316] gi|302396019|gb|ADL34924.1| oxidoreductase aldo/keto reductase family [Butyrivibrio proteoclasticus B316] Length = 370 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 12/81 (14%), Positives = 21/81 (25%), Gaps = 6/81 (7%) Query: 55 RYPNGEERCIACKLCEAICPA------QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 Y + C+ C C+ S + + CI CG Sbjct: 284 HYFHSGGECVYCNHCQPCPVHIDIGLVNKYYDLSRIGDKLADGHYDKLQVKADSCIMCGH 343 Query: 109 CQEACPVDAIVEGPNFEFATE 129 C++ CP + + Sbjct: 344 CEQVCPFHVKQMKRMKDISDY 364 >gi|260892089|ref|YP_003238186.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Ammonifex degensii KC4] gi|260864230|gb|ACX51336.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Ammonifex degensii KC4] Length = 591 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 9/65 (13%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 R P EE C C LC + P R + ID + C+ CGLC + C Sbjct: 529 RPLPYREEVCRGCGLCLEL---------GCPALALKDRSRRKIVIDPLLCVGCGLCAQVC 579 Query: 114 PVDAI 118 P A+ Sbjct: 580 PFGAL 584 >gi|260597798|ref|YP_003210369.1| electron transport complex protein RnfB [Cronobacter turicensis z3032] gi|260216975|emb|CBA30620.1| Electron transport complex protein rnfB [Cronobacter turicensis z3032] Length = 171 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 22/75 (29%), Gaps = 10/75 (13%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 E E CI C C CP AI + + + C C Sbjct: 81 MAEPVRMLAVIDEPNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCN 130 Query: 108 LCQEACPVDAIVEGP 122 LC + CP I P Sbjct: 131 LCVDPCPTQCIELRP 145 >gi|284176087|ref|ZP_06390056.1| oxidoreductase [Sulfolobus solfataricus 98/2] gi|261602958|gb|ACX92561.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus solfataricus 98/2] Length = 455 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 28/92 (30%), Positives = 36/92 (39%), Gaps = 17/92 (18%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 L Y NG R AC +CE CP AI ++ + +I KC CGL Sbjct: 109 KPVYLSEYCNGLYR--ACNVCELSCPYNAIKVD----------KKTGVNIIYTKCTSCGL 156 Query: 109 CQEACPVDAIVE-----GPNFEFATETRQELY 135 C +CPV AI FE A ++ Sbjct: 157 CVASCPVSAIQFPSLSQNSIFELAKVKGEKRI 188 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 23/68 (33%), Gaps = 7/68 (10%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 + L RC C+ C CP AI + D D +KCI C +C Sbjct: 290 PYILFDVNIDNNRCTLCESCVNWCPTSAIMLRRSSGVE-------EIDFDPMKCIGCNIC 342 Query: 110 QEACPVDA 117 CP Sbjct: 343 VNVCPESC 350 >gi|254509402|ref|ZP_05121485.1| electron transport complex protein RnfB [Vibrio parahaemolyticus 16] gi|219547676|gb|EED24718.1| electron transport complex protein RnfB [Vibrio parahaemolyticus 16] Length = 193 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 10/66 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E+ CI C C CP AI + + + +C C LC CP D Sbjct: 107 FIHEDMCIGCTKCIQACPVDAIVGGTK----------ALHTVIKDECTGCDLCVAPCPTD 156 Query: 117 AIVEGP 122 I P Sbjct: 157 CIEMIP 162 >gi|220904268|ref|YP_002479580.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868567|gb|ACL48902.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 366 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 11/73 (15%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 ++ CI C C CP QA+++ ++ +CI C C C Sbjct: 186 THVSINKDDCIGCAKCVHSCPQQALSMRDHKSH-----------VETARCIGCFECMTVC 234 Query: 114 PVDAIVEGPNFEF 126 P AIV E Sbjct: 235 PAKAIVIDWATEM 247 Score = 38.5 bits (88), Expect = 0.31, Method: Composition-based stats. Identities = 9/40 (22%), Positives = 13/40 (32%) Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 I+ CI C C +CP A+ + R Sbjct: 184 HATHVSINKDDCIGCAKCVHSCPQQALSMRDHKSHVETAR 223 >gi|164688083|ref|ZP_02212111.1| hypothetical protein CLOBAR_01728 [Clostridium bartlettii DSM 16795] gi|164602496|gb|EDQ95961.1| hypothetical protein CLOBAR_01728 [Clostridium bartlettii DSM 16795] Length = 628 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 12/81 (14%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 K P + L CI C LC+ CPA+AI E + + Sbjct: 557 HVKDKKCPAAKCTAMLNYVITD--DCIGCGLCKKNCPAEAINGEKKQK----------HV 604 Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID KC+ CG C E C AI Sbjct: 605 IDTTKCLKCGACMEKCKKGAI 625 Score = 37.4 bits (85), Expect = 0.68, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 9/72 (12%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 ++ + Y I CI CGLC++ CP +AI E +Q+ D Sbjct: 557 HVKDKKCPAAKCTAMLNYVI-TDDCIGCGLCKKNCPAEAIN--------GEKKQKHVIDT 607 Query: 139 ERLLNNGDRWES 150 + L G E Sbjct: 608 TKCLKCGACMEK 619 >gi|119489272|ref|ZP_01622079.1| NAD-reducing hydrogenase subunit U [Lyngbya sp. PCC 8106] gi|119454746|gb|EAW35891.1| NAD-reducing hydrogenase subunit U [Lyngbya sp. PCC 8106] Length = 238 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 10/91 (10%) Query: 55 RYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLCQ 110 ++ RCI C C +C A + R D T + C CG C Sbjct: 140 QFGIDHNRCILCTRCVRVCDEIEGAHVWDVAGRGADAKVITGLNQPWGQVSACTSCGKCV 199 Query: 111 EACPVDAIVEGPNFEFATETRQELYYDKERL 141 +ACP +I T +E+ +D +L Sbjct: 200 DACPTGSIFRK------GSTVEEMIHDHSKL 224 >gi|147920868|ref|YP_685325.1| tungsten formylmethanofuran dehydrogenase, subunit G [uncultured methanogenic archaeon RC-I] gi|110620721|emb|CAJ35999.1| tungsten formylmethanofuran dehydrogenase, subunit G [uncultured methanogenic archaeon RC-I] Length = 82 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 20/68 (29%), Gaps = 4/68 (5%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRT----VRYDIDMIKCIYCGLCQEACPV 115 C C C CP A+ + +D C CG+C E CP Sbjct: 15 NRTCTGCNNCVVACPVNALELTVANPVTKKKTYNVLNGKAVVVDEEVCNGCGICLEVCPQ 74 Query: 116 DAIVEGPN 123 AI Sbjct: 75 RAITLTTE 82 Score = 33.9 bits (76), Expect = 6.6, Method: Composition-based stats. Identities = 10/25 (40%), Positives = 12/25 (48%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEG 121 DI C C C ACPV+A+ Sbjct: 12 DIQNRTCTGCNNCVVACPVNALELT 36 >gi|257076285|ref|ZP_05570646.1| putative ATPase RIL [Ferroplasma acidarmanus fer1] Length = 590 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 21/63 (33%), Gaps = 2/63 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESG-PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 ERC K C C + SG + I CI CG+C CP A Sbjct: 7 DRERCHP-KKCNHECRYYCPPVRSGAKTIEFPGQSDDFPVITESLCIGCGICVNRCPFGA 65 Query: 118 IVE 120 I Sbjct: 66 IKI 68 >gi|326329869|ref|ZP_08196186.1| ferredoxin--NADP reductase [Nocardioidaceae bacterium Broad-1] gi|325952336|gb|EGD44359.1| ferredoxin--NADP reductase [Nocardioidaceae bacterium Broad-1] Length = 560 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 22/64 (34%), Gaps = 3/64 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C A C CP I G G +D C+ CG C ACP Sbjct: 1 MPHVVTQSCCADASCVVACPVNCIHPAPGE---PGFGEAEMLYVDAKSCVDCGACVTACP 57 Query: 115 VDAI 118 DAI Sbjct: 58 ADAI 61 >gi|317059515|ref|ZP_07924000.1| electron transport complex [Fusobacterium sp. 3_1_5R] gi|313685191|gb|EFS22026.1| electron transport complex [Fusobacterium sp. 3_1_5R] Length = 316 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 28/92 (30%), Gaps = 11/92 (11%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 P K T + CI C +C+ CP AI + + Sbjct: 189 KSVIAMTPVAKKVTVKCMSKDKGGDAKKACGIACIGCGMCQRTCPFGAIEVSNNLA---- 244 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 ID KC C LC CP AI G Sbjct: 245 -------KIDPAKCKNCQLCVVVCPTKAIYTG 269 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 5/70 (7%) Query: 59 GEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIK---CIYCGLCQEAC 113 EE CI+C LC CP A+T + + D CI CG+CQ C Sbjct: 173 DEEACISCGLCVKACPKSVIAMTPVAKKVTVKCMSKDKGGDAKKACGIACIGCGMCQRTC 232 Query: 114 PVDAIVEGPN 123 P AI N Sbjct: 233 PFGAIEVSNN 242 Score = 42.4 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 10/67 (14%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 + + C+ CE +CP AI + +D CI CGLC +ACP Sbjct: 140 DKSCKYGCLGYGDCERVCPVGAIVVNEKGIAS----------VDEEACISCGLCVKACPK 189 Query: 116 DAIVEGP 122 I P Sbjct: 190 SVIAMTP 196 >gi|310779216|ref|YP_003967549.1| hydrogenase large subunit domain protein [Ilyobacter polytropus DSM 2926] gi|309748539|gb|ADO83201.1| hydrogenase large subunit domain protein [Ilyobacter polytropus DSM 2926] Length = 480 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 27/65 (41%), Gaps = 6/65 (9%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEAC 113 E+CI C LC C AI P T + D I+ KC+ CG C AC Sbjct: 153 PEKCIGCGLCAKSCDYYAIVKLERPCERACTLNAITKDENGAADINKDKCVACGACHVAC 212 Query: 114 PVDAI 118 P AI Sbjct: 213 PFGAI 217 Score = 38.5 bits (88), Expect = 0.28, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 5/61 (8%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-----IDMIKCIYCGLCQEACPVDA 117 C C + + + R + +D I KCI CGLC ++C A Sbjct: 111 CDVCPSGKYYATDLCRNCIAHNCTNVCPRDAIVFDDGRAKIIPEKCIGCGLCAKSCDYYA 170 Query: 118 I 118 I Sbjct: 171 I 171 >gi|261402608|ref|YP_003246832.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus vulcanius M7] gi|261369601|gb|ACX72350.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus vulcanius M7] Length = 247 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 28/89 (31%), Gaps = 11/89 (12%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + R + C+ C +C CP AI + Sbjct: 170 CPKKCIKVENEIGDVIRTRDIDVNKNLCVGCFVCIEECPVNAIDQDGDKV---------- 219 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 I+ KCI CG C + CP +AI Sbjct: 220 -KINKEKCILCGRCVDVCPTNAIKMWDIH 247 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 34/88 (38%), Gaps = 10/88 (11%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 P + L+ Y EE+CI C +C CP AI + R ++++ C+ Sbjct: 112 PVPHRKIRLKSYQLDEEKCIKCGICARFCPTNAIKVV----------RRKSIEVNLDLCM 161 Query: 105 YCGLCQEACPVDAIVEGPNFEFATETRQ 132 CG C+ CP I TR Sbjct: 162 GCGACESVCPKKCIKVENEIGDVIRTRD 189 Score = 41.6 bits (96), Expect = 0.033, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 28/73 (38%), Gaps = 15/73 (20%) Query: 61 ERCIACKLCEAICPAQA---------------ITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++C+ C++C CP A + R Y +D KCI Sbjct: 73 DKCVKCEICAQTCPVGAIYVIEGEAEVKDEEVHYLIKEKPVPHRKIRLKSYQLDEEKCIK 132 Query: 106 CGLCQEACPVDAI 118 CG+C CP +AI Sbjct: 133 CGICARFCPTNAI 145 Score = 40.5 bits (93), Expect = 0.076, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 3/56 (5%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C CE++CP + I +E+ RT D++ C+ C +C E CPV+AI Sbjct: 160 CMGCGACESVCPKKCIKVENEIGDVI---RTRDIDVNKNLCVGCFVCIEECPVNAI 212 Score = 38.9 bits (89), Expect = 0.26, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 9/63 (14%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E +C+ C LC CP AI I KC+ C +C + CPV Sbjct: 38 YIDETKCVRCNLCYKECPVNAIEKAKVKNPA---------KIIEDKCVKCEICAQTCPVG 88 Query: 117 AIV 119 AI Sbjct: 89 AIY 91 >gi|188586889|ref|YP_001918434.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351576|gb|ACB85846.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 226 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 12/84 (14%) Query: 47 FRGEHALRRYPNGEERCIACK---LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103 + GE + E CI C+ +C +CP AI G G R ID +C Sbjct: 109 WNGEGLFGNFRIIPETCIQCEEPVMCAEVCPQNAI----GSHPETGARV-----IDEDEC 159 Query: 104 IYCGLCQEACPVDAIVEGPNFEFA 127 + CG C +ACP + I PN A Sbjct: 160 VGCGECVDACPWEMIAMDPNDNVA 183 Score = 33.5 bits (75), Expect = 9.4, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 25/91 (27%), Gaps = 22/91 (24%) Query: 55 RYPNGEERCIACKLCEAICPA-------------------QAITIESGPRCHDGTRRTVR 95 RC C+ CE IC S +G Sbjct: 58 MLVVDSTRCSGCRRCETICSVFNRGSSNPNVSGIKIARNQNYGQQSSTLGFWNGEGLFGN 117 Query: 96 YDIDMIKCIYCG---LCQEACPVDAIVEGPN 123 + I CI C +C E CP +AI P Sbjct: 118 FRIIPETCIQCEEPVMCAEVCPQNAIGSHPE 148 >gi|163814709|ref|ZP_02206098.1| hypothetical protein COPEUT_00860 [Coprococcus eutactus ATCC 27759] gi|158450344|gb|EDP27339.1| hypothetical protein COPEUT_00860 [Coprococcus eutactus ATCC 27759] Length = 484 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 22/70 (31%), Gaps = 8/70 (11%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY--------DIDMIKCIYCGL 108 +C C C CP AI P + ID KCI CG Sbjct: 125 YIDPSKCKECGQCAKACPYNAIADLMRPCIKSCPVGAISVAENGTGIAVIDKDKCIDCGS 184 Query: 109 CQEACPVDAI 118 C CP AI Sbjct: 185 CIHKCPFGAI 194 Score = 37.4 bits (85), Expect = 0.68, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 13/60 (21%) Query: 61 ERCIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C C+ C AI++ ID KC CG C +ACP +AI Sbjct: 98 DNCQKCMGRACQQACRFGAISMGRDKSY-----------IDPSKCKECGQCAKACPYNAI 146 >gi|110669517|ref|YP_659328.1| ferredoxin II [Haloquadratum walsbyi DSM 16790] gi|109627264|emb|CAJ53754.1| ferredoxin II [Haloquadratum walsbyi DSM 16790] Length = 106 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 28/82 (34%), Gaps = 7/82 (8%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P E A+ + CIA C CP T P R+ Sbjct: 25 PTEPPEQLGIHGTHVAV-----DYDICIADGACLDSCPVDVFTWVETPGHPQSDRKVEPS 79 Query: 97 DIDMIKCIYCGLCQEACPVDAI 118 +CI C LC + CPVDAI Sbjct: 80 --HEAQCIDCMLCVDICPVDAI 99 >gi|11499958|ref|NP_071204.1| iron-sulfur cluster binding protein [Archaeoglobus fulgidus DSM 4304] gi|2650715|gb|AAB91284.1| iron-sulfur cluster binding protein [Archaeoglobus fulgidus DSM 4304] Length = 283 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 12/63 (19%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 E+C +C LC +C A+ E G Y +D KC C C CP AI Sbjct: 64 PEKCSSCGLCYDLCRFGAVVAEDG------------YYVDEKKCEGCAFCFNVCPERAIE 111 Query: 120 EGP 122 Sbjct: 112 MEN 114 >gi|114563344|ref|YP_750857.1| electron transport complex protein RnfB [Shewanella frigidimarina NCIMB 400] gi|114334637|gb|ABI72019.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella frigidimarina NCIMB 400] Length = 193 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 24/66 (36%), Gaps = 10/66 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E+ CI C C CP AI + + + C C LC E CPVD Sbjct: 109 YIREDECIGCTKCIQACPVDAILGAGK----------LMHTVIAKDCTGCDLCVEPCPVD 158 Query: 117 AIVEGP 122 I P Sbjct: 159 CIDMIP 164 >gi|325281384|ref|YP_004253926.1| Fe-S center protein, putative ferredoxin [Odoribacter splanchnicus DSM 20712] gi|324313193|gb|ADY33746.1| uncharacterized Fe-S center protein, putative ferredoxin [Odoribacter splanchnicus DSM 20712] Length = 372 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 17/79 (21%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C +C C +AI ++ ID +C+ CG C C DA Sbjct: 192 DSQNCKKCGICIKHCAHEAIHFDAQHIAE----------IDYSRCVGCGQCVALCQYDAA 241 Query: 119 VEGP-------NFEFATET 130 V G N++ A T Sbjct: 242 VMGESDTSERLNYKIAEYT 260 >gi|309389873|gb|ADO77753.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Halanaerobium praevalens DSM 2228] Length = 573 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 3/78 (3%) Query: 59 GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMI--KCIYCGLCQEACPV 115 +CI C C IC Q ++ + T +D+ C CG C CPV Sbjct: 147 DPNKCILCGRCVRICEEVQGVSALQFTERGFDSIVTTAFDLPQAEINCANCGQCATVCPV 206 Query: 116 DAIVEGPNFEFATETRQE 133 AI E + ++ Sbjct: 207 GAITEINEIDKVWAALED 224 >gi|297570569|ref|YP_003691913.1| formate dehydrogenase, alpha subunit [Desulfurivibrio alkaliphilus AHT2] gi|296926484|gb|ADH87294.1| formate dehydrogenase, alpha subunit [Desulfurivibrio alkaliphilus AHT2] Length = 1326 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 1/65 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +CI C+ C C +AI + + G R + ++ + C+ CG C + C A+ Sbjct: 577 DLNKCIYCRNCTDSCEYRAIDLTAESFDDKGRARGISFN-FLDSCVSCGKCVDNCSTGAL 635 Query: 119 VEGPN 123 + Sbjct: 636 NKKDQ 640 Score = 34.7 bits (78), Expect = 3.9, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 11/79 (13%) Query: 54 RRYPNGEERCIACKL-----C---EAICPAQAITIESGPRCHDGTRRTVRY---DIDMIK 102 + N ERC++C C ++G R + +D+ K Sbjct: 521 QMAKNEAERCLSCGCTAFDRCDLKREFISHGLDPNKTGMATKPVYPRRTDHPTIAVDLNK 580 Query: 103 CIYCGLCQEACPVDAIVEG 121 CIYC C ++C AI Sbjct: 581 CIYCRNCTDSCEYRAIDLT 599 >gi|260772822|ref|ZP_05881738.1| iron-sulfur cluster-binding protein [Vibrio metschnikovii CIP 69.14] gi|260611961|gb|EEX37164.1| iron-sulfur cluster-binding protein [Vibrio metschnikovii CIP 69.14] Length = 553 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 31/103 (30%), Gaps = 28/103 (27%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C C C A+CP +A+ C+ CGLC ACP + Sbjct: 418 QDCTLCMSCVAVCPTRALHHSGDIPALH---------FTEQDCVQCGLCVTACPEKVLTA 468 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 P N D E + + + + P R Sbjct: 469 VPR-------------------INWDHDERQAAQVLHQEEPAR 492 Score = 40.5 bits (93), Expect = 0.090, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 6/54 (11%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 C+ C CPA A++ E + R +I+ C G C ACP +AI Sbjct: 186 CERCVDACPAGALSSEGSAQTGH------RIEINPYLCQGIGTCATACPTEAIH 233 >gi|257466645|ref|ZP_05630956.1| electron transport complex, RnfABCDGE type, B subunit [Fusobacterium gonidiaformans ATCC 25563] Length = 312 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 28/92 (30%), Gaps = 11/92 (11%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 P K T + CI C +C+ CP AI + + Sbjct: 185 KSVIAMTPVAKKVTVKCMSKDKGGDAKKACGIACIGCGMCQRTCPFGAIEVSNNLA---- 240 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 ID KC C LC CP AI G Sbjct: 241 -------KIDPAKCKNCQLCVVVCPTKAIYTG 265 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 5/70 (7%) Query: 59 GEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIK---CIYCGLCQEAC 113 EE CI+C LC CP A+T + + D CI CG+CQ C Sbjct: 169 DEEACISCGLCVKACPKSVIAMTPVAKKVTVKCMSKDKGGDAKKACGIACIGCGMCQRTC 228 Query: 114 PVDAIVEGPN 123 P AI N Sbjct: 229 PFGAIEVSNN 238 Score = 42.4 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 10/67 (14%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 + + C+ CE +CP AI + +D CI CGLC +ACP Sbjct: 136 DKSCKYGCLGYGDCERVCPVGAIVVNEKGIAS----------VDEEACISCGLCVKACPK 185 Query: 116 DAIVEGP 122 I P Sbjct: 186 SVIAMTP 192 >gi|256810025|ref|YP_003127394.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus fervens AG86] gi|256793225|gb|ACV23894.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus fervens AG86] Length = 176 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%) Query: 63 CIACKLCEAICPAQAITIESGP--RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 CI C+ C +CP +AI + + + + I+ +CIYC C + CPV ++ Sbjct: 66 CIGCEGCANVCPTKAIEMIPTEPVKITENYVKDKIPKINPERCIYCLYCHDFCPVFSVF 124 Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats. Identities = 9/26 (34%), Positives = 10/26 (38%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGP 122 + CI C C CP AI P Sbjct: 60 TVIEELCIGCEGCANVCPTKAIEMIP 85 >gi|218884037|ref|YP_002428419.1| iindolepyruvate ferredoxin oxidoreductase, alpha subunit [Desulfurococcus kamchatkensis 1221n] gi|218765653|gb|ACL11052.1| iindolepyruvate ferredoxin oxidoreductase, alpha subunit [Desulfurococcus kamchatkensis 1221n] Length = 634 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 30/97 (30%), Gaps = 13/97 (13%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 + Y + + K + R + Y E+C C+ C A AI + Sbjct: 546 IIGEYLVRKGVNVVI--AKHPCALEERRTKHVEPYVVDAEKCTGCRACIASTGCPAIIMV 603 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 G I C CGLC C DAI Sbjct: 604 EGKAY-----------IIEEDCNGCGLCVRYCQYDAI 629 >gi|206602054|gb|EDZ38536.1| NADH dehydrogenase (quinone), chain G [Leptospirillum sp. Group II '5-way CG'] Length = 903 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 19/60 (31%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RCI C C IC G + C +CG C E CP AI Sbjct: 142 NANRCILCGKCVRICDEIQDVHAIGFINRGFDTIIGPPLGKKLDCEFCGDCLEVCPTGAI 201 Score = 33.9 bits (76), Expect = 6.6, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 20/80 (25%), Gaps = 8/80 (10%) Query: 42 STSPRFRGEHALRRYPNGEERCIAC---KLCEAICPAQAI-----TIESGPRCHDGTRRT 93 R + + C C C + A ES ++ Sbjct: 77 PKIHDARKTNLELLLLHHPLDCPVCDCGGECPLQNMSFAYGATESRFESHRNDEPEDLKS 136 Query: 94 VRYDIDMIKCIYCGLCQEAC 113 + +CI CG C C Sbjct: 137 DVLVFNANRCILCGKCVRIC 156 >gi|124515810|gb|EAY57319.1| NADH dehydrogenase (quinone), chain G [Leptospirillum rubarum] Length = 903 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 19/60 (31%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RCI C C IC G + C +CG C E CP AI Sbjct: 142 NANRCILCGKCVRICDEIQDVHAIGFINRGFDTIIGPPLGKKLDCEFCGDCLEVCPTGAI 201 Score = 33.9 bits (76), Expect = 6.6, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 20/80 (25%), Gaps = 8/80 (10%) Query: 42 STSPRFRGEHALRRYPNGEERCIAC---KLCEAICPAQAI-----TIESGPRCHDGTRRT 93 R + + C C C + A ES ++ Sbjct: 77 PKIHDARKTNLELLLLHHPLDCPVCDCGGECPLQNMSFAYGATESRFESHRNDEPEDLKS 136 Query: 94 VRYDIDMIKCIYCGLCQEAC 113 + +CI CG C C Sbjct: 137 DVLVFNANRCILCGKCVRIC 156 >gi|124514072|ref|XP_001350392.1| RNAse L inhibitor protein, putative [Plasmodium falciparum 3D7] gi|23615809|emb|CAD52801.1| RNAse L inhibitor protein, putative [Plasmodium falciparum 3D7] Length = 619 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 1/70 (1%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 LR ++C K C C +++G C + + I CI CG+C + Sbjct: 20 LRIAIVSSDKCKP-KKCHLECKKNCPIVKTGKFCIEVDHASKIAYISETLCIGCGICVKK 78 Query: 113 CPVDAIVEGP 122 CP +I Sbjct: 79 CPFTSISIIN 88 >gi|331085092|ref|ZP_08334178.1| hypothetical protein HMPREF0987_00481 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330407875|gb|EGG87365.1| hypothetical protein HMPREF0987_00481 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 263 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 31/83 (37%), Gaps = 11/83 (13%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P+E E CI C++C+ +CPA AI +E+ Sbjct: 191 VPYEAKHLVQCSSKEKGKDVMAVCSTGCIGCRMCQKVCPADAIVVENNLA---------- 240 Query: 96 YDIDMIKCIYCGLCQEACPVDAI 118 ID KC CG C E CP I Sbjct: 241 -WIDPEKCTNCGACAEKCPKKII 262 Score = 38.5 bits (88), Expect = 0.34, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 5/70 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCH-----DGTRRTVRYDIDMIKCIYCGLCQEAC 113 +E C AC C CP I + H + + CI C +CQ+ C Sbjct: 169 DKEACKACGKCIKACPKNLIELVPYEAKHLVQCSSKEKGKDVMAVCSTGCIGCRMCQKVC 228 Query: 114 PVDAIVEGPN 123 P DAIV N Sbjct: 229 PADAIVVENN 238 Score = 34.3 bits (77), Expect = 5.8, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 11/66 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + + C C CP AI I G +D C CG C +ACP + Sbjct: 138 KSCDYGCCGFGTCVKACPFDAIHIVDGVAV-----------VDKEACKACGKCIKACPKN 186 Query: 117 AIVEGP 122 I P Sbjct: 187 LIELVP 192 >gi|330826439|ref|YP_004389742.1| methyl-viologen-reducing hydrogenase subunit delta [Alicycliphilus denitrificans K601] gi|329311811|gb|AEB86226.1| methyl-viologen-reducing hydrogenase delta subunit [Alicycliphilus denitrificans K601] Length = 527 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 26/75 (34%), Gaps = 7/75 (9%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 R A+ E C C C CP AIT+ + P G R + Sbjct: 296 PPFLPTATRQAVAVVY----PEHCSGCARCFDDCPYSAITMVAHPNGKPGMRLA---QVR 348 Query: 100 MIKCIYCGLCQEACP 114 C CG+C +CP Sbjct: 349 ADLCASCGICAGSCP 363 >gi|330828686|ref|YP_004391638.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [Aeromonas veronii B565] gi|328803822|gb|AEB49021.1| Pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Aeromonas veronii B565] Length = 1181 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 26/102 (25%), Gaps = 18/102 (17%) Query: 31 KTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP---- 84 + P + + A E C C C A CP AI + Sbjct: 660 PVSAFPPDGTWPVGTTRWEKRNIAKEIPIWEAELCTQCNYCVAACPHSAIRAKVVEPDAL 719 Query: 85 ------------RCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + D + + C C LC E CP Sbjct: 720 AAAPATLDALDVKSRDMRGQQYVLQVAPEDCTGCNLCVEVCP 761 >gi|320355287|ref|YP_004196626.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfobulbus propionicus DSM 2032] gi|320123789|gb|ADW19335.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Desulfobulbus propionicus DSM 2032] Length = 248 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 26/103 (25%), Positives = 38/103 (36%), Gaps = 17/103 (16%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 T +YP + + RFRG + + + C A+CP +AI E Sbjct: 15 TSSYPTKPIALYSRFRGIPEINADCDPAIA----RQCAALCPQEAIIAEEKK-------- 62 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ID+ +C +CG C + NFE T R L Sbjct: 63 -----IDLGRCTFCGACALVANGAFVRFTQNFELGTAHRDHLI 100 >gi|313897420|ref|ZP_07830963.1| 4Fe-4S binding domain protein [Clostridium sp. HGF2] gi|312957790|gb|EFR39415.1| 4Fe-4S binding domain protein [Clostridium sp. HGF2] Length = 263 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 25/80 (31%), Gaps = 10/80 (12%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 +F G+ ++ C+ C C CP Q I + K Sbjct: 174 YPNKFFGQRFSPPIYTHKQHCVLCGKCRIHCPVQCICKDDEGYPLFDN----------EK 223 Query: 103 CIYCGLCQEACPVDAIVEGP 122 CI+C C CP A+ Sbjct: 224 CIHCYRCIHHCPKKALSLTK 243 Score = 35.1 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 29/87 (33%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P + + R + + + R + I + +I + P G R + Sbjct: 128 PAMRIWSRHEKRLDKKVENDVSVFIRRCNDPVVADIPRFKIYSILNYPNKFFGQRFSPPI 187 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPN 123 C+ CG C+ CPV I + Sbjct: 188 YTHKQHCVLCGKCRIHCPVQCICKDDE 214 >gi|300712349|ref|YP_003738163.1| methyl-viologen-reducing hydrogenase delta subunit [Halalkalicoccus jeotgali B3] gi|299126032|gb|ADJ16371.1| methyl-viologen-reducing hydrogenase delta subunit [Halalkalicoccus jeotgali B3] Length = 712 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 28/71 (39%), Gaps = 13/71 (18%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C +CP AI R G + + KC+ CGLC+E CP AI Sbjct: 575 CTLTPTCSNLCPTDAIR-----RTEWGL------EFNHEKCVNCGLCEEGCPESAITMRD 623 Query: 123 NFEFA--TETR 131 + + E R Sbjct: 624 GLDLSLLPENR 634 Score = 38.5 bits (88), Expect = 0.29, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 10/55 (18%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C+ C CP A+ R DID + C CG C ACP A+ Sbjct: 311 CRACYDACPHDAVAK----------PRPDEVDIDPVACQNCGACTSACPTGAVSL 355 >gi|257452975|ref|ZP_05618274.1| electron transport complex, RnfABCDGE type, B subunit [Fusobacterium sp. 3_1_5R] Length = 312 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 28/92 (30%), Gaps = 11/92 (11%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 P K T + CI C +C+ CP AI + + Sbjct: 185 KSVIAMTPVAKKVTVKCMSKDKGGDAKKACGIACIGCGMCQRTCPFGAIEVSNNLA---- 240 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 ID KC C LC CP AI G Sbjct: 241 -------KIDPAKCKNCQLCVVVCPTKAIYTG 265 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 28/70 (40%), Gaps = 5/70 (7%) Query: 59 GEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIK---CIYCGLCQEAC 113 EE CI+C LC CP A+T + + D CI CG+CQ C Sbjct: 169 DEEACISCGLCVKACPKSVIAMTPVAKKVTVKCMSKDKGGDAKKACGIACIGCGMCQRTC 228 Query: 114 PVDAIVEGPN 123 P AI N Sbjct: 229 PFGAIEVSNN 238 Score = 42.4 bits (98), Expect = 0.022, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 10/67 (14%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 + + C+ CE +CP AI + +D CI CGLC +ACP Sbjct: 136 DKSCKYGCLGYGDCERVCPVGAIVVNEKGIAS----------VDEEACISCGLCVKACPK 185 Query: 116 DAIVEGP 122 I P Sbjct: 186 SVIAMTP 192 >gi|253579458|ref|ZP_04856728.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849556|gb|EES77516.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 284 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 15/69 (21%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L +Y +++CI C C C +E+ CI CG C++A Sbjct: 224 LYKYRVDKDKCIKCGKCAKACQMIVDPVENSNSPE---------------CIRCGRCKKA 268 Query: 113 CPVDAIVEG 121 CP DAI G Sbjct: 269 CPTDAIQCG 277 >gi|224023700|ref|ZP_03642066.1| hypothetical protein BACCOPRO_00416 [Bacteroides coprophilus DSM 18228] gi|224016922|gb|EEF74934.1| hypothetical protein BACCOPRO_00416 [Bacteroides coprophilus DSM 18228] Length = 322 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 8/76 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------DMIKCIYCGLCQ 110 E +C AC C CP I I + + CI CG C Sbjct: 169 DENKCTACGACSKACPRNIIEIRPKGKNNRRVVVMCVNKDKGAVANKACSASCIGCGKCV 228 Query: 111 EACPVDAIVEGPNFEF 126 + CP +AI N + Sbjct: 229 KVCPFEAITLENNLAY 244 Score = 40.5 bits (93), Expect = 0.080, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 9/60 (15%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C C + C AI I ++D KC CG C +ACP + I P Sbjct: 142 CLGCGDCVSACQFDAIHINPETGLP---------EVDENKCTACGACSKACPRNIIEIRP 192 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 25/61 (40%), Gaps = 11/61 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C C +CP +AIT+E+ ID KC C C+ CP AI Sbjct: 217 CSASCIGCGKCVKVCPFEAITLENNLAY-----------IDPAKCKSCRKCEMECPKGAI 265 Query: 119 V 119 Sbjct: 266 H 266 >gi|222873278|gb|EEF10409.1| predicted protein [Populus trichocarpa] Length = 238 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 24/81 (29%), Gaps = 10/81 (12%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 S E E CI C LC CP AI + + + Sbjct: 71 PLSAEHGTEAPRTVAVIDEAWCIGCTLCIKACPTDAILGANK----------FMHTVIAA 120 Query: 102 KCIYCGLCQEACPVDAIVEGP 122 C C LC CPVD I Sbjct: 121 HCTGCELCIPVCPVDCIELHN 141 >gi|188587487|ref|YP_001919032.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179352174|gb|ACB86444.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 384 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 10/62 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E C C+ C +CP AI + I+ C+ CG C C + Sbjct: 194 KWEPENCTLCERCVDVCPHDAIYRTEEDQIE----------INYEICVKCGRCARVCKEE 243 Query: 117 AI 118 A+ Sbjct: 244 AL 245 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 8/24 (33%), Positives = 9/24 (37%) Query: 100 MIKCIYCGLCQEACPVDAIVEGPN 123 C C C + CP DAI Sbjct: 197 PENCTLCERCVDVCPHDAIYRTEE 220 >gi|148378952|ref|YP_001253493.1| anaerobic sulfite reductase, subunit C [Clostridium botulinum A str. ATCC 3502] gi|153931720|ref|YP_001383335.1| anaerobic sulfite reductase, subunit C [Clostridium botulinum A str. ATCC 19397] gi|153936257|ref|YP_001386883.1| anaerobic sulfite reductase, subunit C [Clostridium botulinum A str. Hall] gi|148288436|emb|CAL82513.1| anaerobic sulfite reductase subunit c [Clostridium botulinum A str. ATCC 3502] gi|152927764|gb|ABS33264.1| anaerobic sulfite reductase, subunit C [Clostridium botulinum A str. ATCC 19397] gi|152932171|gb|ABS37670.1| anaerobic sulfite reductase, subunit C [Clostridium botulinum A str. Hall] Length = 321 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 23/88 (26%), Gaps = 8/88 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + G + + RC+ C+ C C +A Sbjct: 145 CPNDCIKARMHDFGILGMTEPQYDKYRCVGCQACVNNCKKRATGALRFENFKVIRDH--- 201 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPN 123 KCI CG C CP A Sbjct: 202 -----EKCIGCGECIGKCPTGAWTRSKE 224 >gi|77919233|ref|YP_357048.1| NADP-reducing hydrogenase subunit C [Pelobacter carbinolicus DSM 2380] gi|77919440|ref|YP_357255.1| NADP-reducing hydrogenase subunit C [Pelobacter carbinolicus DSM 2380] gi|77545316|gb|ABA88878.1| NADH dehydrogenase subunit F [Pelobacter carbinolicus DSM 2380] gi|77545523|gb|ABA89085.1| NADH dehydrogenase subunit F [Pelobacter carbinolicus DSM 2380] Length = 486 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 10/67 (14%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 L Y +++C+ C LC +CP I+ + + ID CI CG C + Sbjct: 427 ELLEYTVVDQKCVGCTLCAKVCPVNCISGKPKE----------VHVIDQAACIKCGACLD 476 Query: 112 ACPVDAI 118 C DAI Sbjct: 477 KCKFDAI 483 Score = 38.5 bits (88), Expect = 0.30, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 17/44 (38%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + + Y + KC+ C LC + CPV+ I P Sbjct: 414 HVIDKKCPAGVCAELLEYTVVDQKCVGCTLCAKVCPVNCISGKP 457 >gi|89901572|ref|YP_524043.1| 4Fe-4S ferredoxin [Rhodoferax ferrireducens T118] gi|89346309|gb|ABD70512.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodoferax ferrireducens T118] Length = 608 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 27/98 (27%), Gaps = 20/98 (20%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID----- 99 R + + + CI C C ICP IT S D R Sbjct: 488 EASRCLNCDVQTVFNRDTCIECDACVDICPMDCITFTSNGEEADLRTRLKAPAHHTAQDL 547 Query: 100 ---------------MIKCIYCGLCQEACPVDAIVEGP 122 C++CGLC E CP A Sbjct: 548 YVSSELKTGRVMVKDEDVCLHCGLCAERCPTGAWDMQK 585 Score = 37.4 bits (85), Expect = 0.72, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 18/60 (30%), Gaps = 2/60 (3%) Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 E A T ++ CI C C + CP+D I N E A Sbjct: 474 VEVELGFDAATAFKEASRCLNCDVQTVFN--RDTCIECDACVDICPMDCITFTSNGEEAD 531 >gi|15644046|ref|NP_229095.1| iron-sulfur cluster-binding protein [Thermotoga maritima MSB8] gi|170289311|ref|YP_001739549.1| cobyrinic acid ac-diamide synthase [Thermotoga sp. RQ2] gi|4981849|gb|AAD36365.1|AE001784_7 iron-sulfur cluster-binding protein [Thermotoga maritima MSB8] gi|170176814|gb|ACB09866.1| Cobyrinic acid ac-diamide synthase [Thermotoga sp. RQ2] Length = 288 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 16/87 (18%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93 I +P + +RG+ A+ +E+C C +CE +C AI Sbjct: 43 ILFPGDPVEEHEYYRGKKAVI----DQEKCDRCGICERVCRFDAIIPGE----------- 87 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVE 120 +Y +D C C C +CP +AI Sbjct: 88 -KYGVDQYACEGCNACVVSCPRNAITL 113 Score = 38.5 bits (88), Expect = 0.28, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 19/42 (45%) Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 P R + ID KC CG+C+ C DAI+ G + Sbjct: 48 DPVEEHEYYRGKKAVIDQEKCDRCGICERVCRFDAIIPGEKY 89 >gi|45359028|ref|NP_988585.1| hypothetical protein MMP1465 [Methanococcus maripaludis S2] gi|45047903|emb|CAF31021.1| conserved hypothetical protein [Methanococcus maripaludis S2] Length = 252 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 10/77 (12%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 + L ++ EE CI C +CE CP AIT+E + DI++ C+ C Sbjct: 119 HRKIRLVKHELDEESCIKCGICERFCPTSAITVE----------KRNSIDINLNLCMGCT 168 Query: 108 LCQEACPVDAIVEGPNF 124 C++ CP AI Sbjct: 169 ACEKVCPKSAIKVENEM 185 Score = 41.2 bits (95), Expect = 0.051, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 30/83 (36%), Gaps = 11/83 (13%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P A + CI C +C ICP AI E G Sbjct: 174 CPKSAIKVENEMGEITAENEISLNNDTCINCMVCSEICPVGAIVYEDG-----------L 222 Query: 96 YDIDMIKCIYCGLCQEACPVDAI 118 +D CI+CG C++ CPV AI Sbjct: 223 MKLDDKMCIFCGKCEKNCPVTAI 245 Score = 40.9 bits (94), Expect = 0.068, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 9/69 (13%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 R +CI C+LC +CP AI S +I KC+ C +C Sbjct: 36 PVERNLYVESNKCIRCELCYEMCPVDAIKEPSVKSPA---------EILPEKCVKCEICA 86 Query: 111 EACPVDAIV 119 + CPV AI Sbjct: 87 KTCPVGAIN 95 Score = 38.2 bits (87), Expect = 0.39, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 15/74 (20%) Query: 60 EERCIACKLCEAICPAQAI---------------TIESGPRCHDGTRRTVRYDIDMIKCI 104 E+C+ C++C CP AI R V++++D CI Sbjct: 76 PEKCVKCEICAKTCPVGAINVLEGRAKLEEDNVVYELKEIDVTHRKIRLVKHELDEESCI 135 Query: 105 YCGLCQEACPVDAI 118 CG+C+ CP AI Sbjct: 136 KCGICERFCPTSAI 149 Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 3/60 (5%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C CE +CP AI +E+ ++ CI C +C E CPV AI Sbjct: 160 NLNLCMGCTACEKVCPKSAIKVENEMGEITAENEIS---LNNDTCINCMVCSEICPVGAI 216 >gi|320353704|ref|YP_004195043.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Desulfobulbus propionicus DSM 2032] gi|320122206|gb|ADW17752.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Desulfobulbus propionicus DSM 2032] Length = 633 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 36/100 (36%), Gaps = 23/100 (23%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGE----HALRRYPNGEERCIACKLCEAICPAQAI 78 LR+F P E + AL + E+C C C CP +AI Sbjct: 545 TLRHF---------PEEYEAHVRDKVCPAGQCKALLKPWINAEKCKGCGKCAKKCPVEAI 595 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + E + ID KCI CG C ++C A+ Sbjct: 596 SGELKQP----------HVIDQDKCIKCGACLQSCKFGAV 625 >gi|317486042|ref|ZP_07944896.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316922720|gb|EFV43952.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 653 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 23/64 (35%), Gaps = 7/64 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +RC+ C C +CP QAI R + C CGLC CP AI Sbjct: 581 DIKRCVGCGKCIKVCPFQAI-------VEKEIRGEKKAQTIEAVCQGCGLCTATCPQGAI 633 Query: 119 VEGP 122 Sbjct: 634 QLSH 637 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 26/86 (30%), Gaps = 17/86 (19%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGP--------RCHDGTRRTVRYDIDMIKCIY--- 105 +C C C CPA+ + + I+ C Sbjct: 236 YVDWSKCTGCGACMDKCPAKKTPDKFNEFVGPTTAINIPFPQAIPKKATINAEFCRKLTS 295 Query: 106 --CGLCQEACPVDAIVEGPNFEFATE 129 CG+C + CP AI N+E E Sbjct: 296 GKCGVCAKVCPTGAI----NYEMKDE 317 Score = 38.2 bits (87), Expect = 0.38, Method: Composition-based stats. Identities = 10/22 (45%), Positives = 13/22 (59%) Query: 102 KCIYCGLCQEACPVDAIVEGPN 123 +C+ CG C + CP AIVE Sbjct: 584 RCVGCGKCIKVCPFQAIVEKEI 605 >gi|229515401|ref|ZP_04404860.1| electron transport complex protein RnfC [Vibrio cholerae TMA 21] gi|229347170|gb|EEO12130.1| electron transport complex protein RnfC [Vibrio cholerae TMA 21] Length = 800 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 29/105 (27%), Gaps = 12/105 (11%) Query: 13 LKEFVGA---FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69 L + L + P K + + L N CI C C Sbjct: 360 LPRLIMGGPMMGFTLPH-------AQVPITKTANCILAPTRNELTSSENEMA-CIRCGQC 411 Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 CP + + ++++ CI CG C CP Sbjct: 412 AEACPVS-LLPQQLQWHAKAEEFDKCEELNLKDCIECGACAYVCP 455 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 10/13 (76%), Positives = 10/13 (76%) Query: 103 CIYCGLCQEACPV 115 CI CG C EACPV Sbjct: 405 CIRCGQCAEACPV 417 >gi|206901296|ref|YP_002251606.1| hypothetical protein DICTH_1795 [Dictyoglomus thermophilum H-6-12] gi|206740399|gb|ACI19457.1| conserved protein [Dictyoglomus thermophilum H-6-12] Length = 378 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 11/67 (16%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + +++CI C++CE CP +AIT ID KCI C C E C Sbjct: 312 QYPVIEDKKCIKCRICENSCPNKAITYTPEGMI-----------IDYKKCISCFCCHELC 360 Query: 114 PVDAIVE 120 P AI Sbjct: 361 PQKAIRL 367 Score = 37.0 bits (84), Expect = 0.79, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 16/34 (47%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 I+ KCI C +C+ +CP AI P + Sbjct: 316 IEDKKCIKCRICENSCPNKAITYTPEGMIIDYKK 349 >gi|156934160|ref|YP_001438076.1| electron transport complex protein RnfB [Cronobacter sakazakii ATCC BAA-894] gi|166225083|sp|A7MMM3|RNFB_ENTS8 RecName: Full=Electron transport complex protein rnfB gi|156532414|gb|ABU77240.1| hypothetical protein ESA_01987 [Cronobacter sakazakii ATCC BAA-894] Length = 192 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 22/75 (29%), Gaps = 10/75 (13%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 E E CI C C CP AI + + + C C Sbjct: 102 MAEPVRMLAVIDEPNCIGCTKCIQACPVDAIVGAT----------RAMHTVMSDLCTGCN 151 Query: 108 LCQEACPVDAIVEGP 122 LC + CP I P Sbjct: 152 LCVDPCPTQCIELRP 166 >gi|118576826|ref|YP_876569.1| hypothetical protein CENSYa_1647 [Cenarchaeum symbiosum A] gi|118195347|gb|ABK78265.1| hypothetical protein CENSYa_1647 [Cenarchaeum symbiosum A] Length = 100 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 1/69 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+RCI C LC IC + G +R + +CI G C CP AI Sbjct: 10 DEQRCIGCALCVEICTTLGPDVLRVKPVE-GWKRGKAFVFYPERCITDGACIGVCPTKAI 68 Query: 119 VEGPNFEFA 127 + Sbjct: 69 FWMRPMNYT 77 >gi|57641914|ref|YP_184392.1| 2-ketoisovalerate ferredoxin oxidoreductase subunit delta [Thermococcus kodakarensis KOD1] gi|57160238|dbj|BAD86168.1| 2-oxoisovalerate:ferredoxin oxidoreductase, delta subunit [Thermococcus kodakarensis KOD1] Length = 105 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 10/65 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E++C+ C +C CP AI I+ ID C CG+C CP AI Sbjct: 49 NEDKCVKCYICWKFCPEPAIYIKPDGYVA----------IDYDYCKGCGICANECPTKAI 98 Query: 119 VEGPN 123 Sbjct: 99 TMEKE 103 >gi|319764278|ref|YP_004128215.1| methyl-viologen-reducing hydrogenase delta subunit [Alicycliphilus denitrificans BC] gi|317118839|gb|ADV01328.1| methyl-viologen-reducing hydrogenase delta subunit [Alicycliphilus denitrificans BC] Length = 527 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 26/75 (34%), Gaps = 7/75 (9%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 R A+ E C C C CP AIT+ + P G R + Sbjct: 296 PPFLPTATRQAVAVVY----PEHCSGCARCFDDCPYSAITMVAHPNGKPGMRLA---QVR 348 Query: 100 MIKCIYCGLCQEACP 114 C CG+C +CP Sbjct: 349 ADLCASCGICAGSCP 363 >gi|288869823|ref|ZP_06111962.2| protein HymB [Clostridium hathewayi DSM 13479] gi|288869448|gb|EFD01747.1| protein HymB [Clostridium hathewayi DSM 13479] Length = 573 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 24/69 (34%), Positives = 28/69 (40%), Gaps = 10/69 (14%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 AL + E+C C LC CPA AIT + ID KC+ CG C Sbjct: 513 KALLNFYIDPEKCKGCTLCARNCPANAITGT----------VKNPHVIDGEKCLKCGACM 562 Query: 111 EACPVDAIV 119 E C AI Sbjct: 563 EKCKFGAIY 571 Score = 37.0 bits (84), Expect = 0.98, Method: Composition-based stats. Identities = 12/51 (23%), Positives = 16/51 (31%) Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 I + + + ID KC C LC CP +AI Sbjct: 493 YFRDEYVAHIVDKTCPAGVCKALLNFYIDPEKCKGCTLCARNCPANAITGT 543 >gi|326204194|ref|ZP_08194054.1| Glutamate synthase (NADPH) [Clostridium papyrosolvens DSM 2782] gi|325985705|gb|EGD46541.1| Glutamate synthase (NADPH) [Clostridium papyrosolvens DSM 2782] Length = 501 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 22/66 (33%), Gaps = 9/66 (13%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 ++CI CK+C C + + + D KC+ C C CP Sbjct: 13 CRDPKKCIKCKVCMRQCANEVHSYDEE---------LDMMVADDSKCVDCQRCVSLCPTR 63 Query: 117 AIVEGP 122 A+ Sbjct: 64 ALRITK 69 >gi|257783995|ref|YP_003179212.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Atopobium parvulum DSM 20469] gi|257472502|gb|ACV50621.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Atopobium parvulum DSM 20469] Length = 461 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 29/86 (33%), Gaps = 13/86 (15%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 L+ +C C C+ C AI I+ + I M C+ CG C Sbjct: 315 YVKLKAPIWDSSKCTVCGDCKNTCTTHAIDIDERGKL----------TIKMPFCVNCGAC 364 Query: 110 QEACPVD-AIVEGPNF--EFATETRQ 132 + CP A+ P E R+ Sbjct: 365 EIVCPEPGALTMVPMNTSELVVRDRK 390 Score = 41.2 bits (95), Expect = 0.053, Method: Composition-based stats. Identities = 13/72 (18%), Positives = 18/72 (25%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103 + + C C + P + ID C Sbjct: 40 PNTDKPFEPMDYKEIPWSNANRCLRCASGKPEACSRCLDVCPANCIDIHNQSVRIDDEAC 99 Query: 104 IYCGLCQEACPV 115 + CGLC ACP Sbjct: 100 LQCGLCVAACPT 111 >gi|261339613|ref|ZP_05967471.1| electron transport complex, RnfABCDGE type, B subunit [Enterobacter cancerogenus ATCC 35316] gi|288318435|gb|EFC57373.1| electron transport complex, RnfABCDGE type, B subunit [Enterobacter cancerogenus ATCC 35316] Length = 192 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 23/72 (31%), Gaps = 11/72 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI + + + C C LC CP I Sbjct: 113 DEANCIGCTKCIQACPVDAIVGAT----------RAMHTVVADLCTGCNLCVAPCPTQCI 162 Query: 119 VEGPNFEFATET 130 P E TE Sbjct: 163 ELRPV-ETTTEN 173 Score = 35.8 bits (81), Expect = 1.7, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C C +ACPVDAI Sbjct: 112 IDEANCIGCTKCIQACPVDAI 132 >gi|225850085|ref|YP_002730319.1| pyruvate synthase subunit PorD (Pyruvate oxidoreductasedelta chain) (POR) (Pyruvic-ferredoxin oxidoreductase subunit delta) [Persephonella marina EX-H1] gi|225645603|gb|ACO03789.1| pyruvate synthase subunit PorD (Pyruvate oxidoreductasedelta chain) (POR) (Pyruvic-ferredoxin oxidoreductase subunit delta) [Persephonella marina EX-H1] Length = 105 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 38/96 (39%), Gaps = 10/96 (10%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E GS+ G + R ++C C +C CP +I + R ++ Sbjct: 19 EAGSSKINHTGSWRMLRPVLHTDKCTHCLICWIFCPDDSIPVTPQER----------FET 68 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134 D C CG+C CP DA+ P E + +EL Sbjct: 69 DFEYCKGCGICATECPYDALEMVPEMEIKLKELEEL 104 >gi|254468272|ref|ZP_05081678.1| electron transport complex protein [beta proteobacterium KB13] gi|207087082|gb|EDZ64365.1| electron transport complex protein [beta proteobacterium KB13] Length = 183 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 26/90 (28%), Gaps = 10/90 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E + E CI C LC CP AI + + I Sbjct: 89 EYKPLNAEHGETKPKSIAIIDESTCIGCTLCIQACPVDAIIGAAKQ----------MHTI 138 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 +C C LC CPVD I E Sbjct: 139 VEKECTGCELCLPPCPVDCIDMVEIPETTD 168 >gi|168187953|ref|ZP_02622588.1| conserved domain protein [Clostridium botulinum C str. Eklund] gi|169294213|gb|EDS76346.1| conserved domain protein [Clostridium botulinum C str. Eklund] Length = 57 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 11/58 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C++C C + CP AI+ ++DID CI CG C CPV AI Sbjct: 7 DSCVSCGSCASECPVGAISQGD-----------SQFDIDASACIDCGNCANVCPVGAI 53 >gi|168184969|ref|ZP_02619633.1| iron-sulfur cluster-binding protein [Clostridium botulinum Bf] gi|237793330|ref|YP_002860882.1| iron-sulfur cluster-binding protein [Clostridium botulinum Ba4 str. 657] gi|182671973|gb|EDT83934.1| iron-sulfur cluster-binding protein [Clostridium botulinum Bf] gi|229262235|gb|ACQ53268.1| iron-sulfur cluster-binding protein [Clostridium botulinum Ba4 str. 657] Length = 387 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 5/58 (8%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+CI C C +CP + I+ + +M KCI C CQE CP AI Sbjct: 319 EKCIGCNRCAEVCPEKPYVIDMIKKEGKKIPVW-----NMKKCIRCFCCQELCPKGAI 371 >gi|171186294|ref|YP_001795213.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Thermoproteus neutrophilus V24Sta] gi|170935506|gb|ACB40767.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermoproteus neutrophilus V24Sta] Length = 368 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 25/62 (40%), Gaps = 10/62 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + +CI C +C CPA A + +C+ CGLC CPV+A+ Sbjct: 80 DQAKCIWCGMCAKSCPATAFEYVERRSI----------RVMYDRCVDCGLCNALCPVEAV 129 Query: 119 VE 120 Sbjct: 130 KM 131 Score = 38.5 bits (88), Expect = 0.30, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 35/107 (32%), Gaps = 26/107 (24%) Query: 39 EKGSTSPRFRGEHALRRYPNGEER--------CIACKLCEAICPAQAITIESGPRCHDGT 90 EK P R + + G C C C +CP A++I Sbjct: 224 EKAPLQPGDRWQTRMLAAALGMPVGRVEVAEGCTLCGACVNVCPTDALSI---------- 273 Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 + + CI CG+C E CP + E R++ Y+ Sbjct: 274 -KGFELRLTPALCIACGVCAEKCPERVVR-------VAEAREDKPYE 312 >gi|145299426|ref|YP_001142267.1| electron transport complex protein RnfC [Aeromonas salmonicida subsp. salmonicida A449] gi|142852198|gb|ABO90519.1| electron transport complex protein RnfC [Aeromonas salmonicida subsp. salmonicida A449] Length = 753 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 10/74 (13%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACPVD 116 + CI C C CPA + P+ R YD +++ CI CG C CP Sbjct: 375 QACIRCSACADACPANLL-----PQELYWYSRAKEYDKAEGLNLFDCIECGACAWVCP-S 428 Query: 117 AIVEGPNFEFATET 130 I ++ A + Sbjct: 429 EIPLVQYYKIAKDD 442 >gi|117618643|ref|YP_857145.1| electron transport complex, RnfABCDGE type, C subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560050|gb|ABK36998.1| electron transport complex, RnfABCDGE type, C subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 851 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 29/74 (39%), Gaps = 10/74 (13%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACPVD 116 + CI C C CPA + P+ R YD +++ CI CG C CP Sbjct: 375 QACIRCSACADACPANLL-----PQELYWYSRAKEYDKAEGLNLFDCIECGACAWVCP-S 428 Query: 117 AIVEGPNFEFATET 130 I ++ A + Sbjct: 429 EIPLVQYYKIAKDD 442 >gi|16182390|gb|AAL13488.1| GH01650p [Drosophila melanogaster] Length = 864 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 18/65 (27%), Gaps = 8/65 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP-VDA 117 ++ CI C C C + C C LC CP +D Sbjct: 782 DDDMCINCGKCYMTCA-------DSGYQAIEFDKDTHIPHVNDDCTGCTLCVSVCPIIDC 834 Query: 118 IVEGP 122 I P Sbjct: 835 ITMVP 839 >gi|84488956|ref|YP_447188.1| HdrA2 [Methanosphaera stadtmanae DSM 3091] gi|84372275|gb|ABC56545.1| HdrA2 [Methanosphaera stadtmanae DSM 3091] Length = 771 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 7/67 (10%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGP-------RCHDGTRRTVRYDIDMIKCIYCGLC 109 ++C +C C + CP + Y +D CI CG+C Sbjct: 242 YVDTQKCTSCGRCTSACPTVVPDEWNEGLINRKAIYKPFPQAVPSTYTLDDEHCIKCGIC 301 Query: 110 QEACPVD 116 CP + Sbjct: 302 TNVCPTN 308 Score = 38.9 bits (89), Expect = 0.21, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 11/60 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++C+ C C C QAIT+ +D I C CG C CP +AI Sbjct: 578 NVKKCVLCGSCVENCVYQAITLNRN-----------SIHVDAISCTGCGDCIITCPQEAI 626 >gi|56695736|ref|YP_166087.1| formate dehydrogenase, alpha subunit [Ruegeria pomeroyi DSS-3] gi|56677473|gb|AAV94139.1| formate dehydrogenase, alpha subunit [Ruegeria pomeroyi DSS-3] Length = 925 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 5/65 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114 + CI C LC C + + G V +D + C+ CG C +ACP Sbjct: 150 NLDACINCNLCVRACR-EVQVNDVIGMAGRGAGAQVVFDQNDPMGASTCVACGECVQACP 208 Query: 115 VDAIV 119 A++ Sbjct: 209 TGALM 213 >gi|15899473|ref|NP_344078.1| pyruvate synthase delta chain (Pyruvic-ferredoxin oxidoreductase delta chain) (porD-2) [Sulfolobus solfataricus P2] gi|284174280|ref|ZP_06388249.1| pyruvate synthase delta chain (Pyruvic-ferredoxin oxidoreductase delta chain) (porD-2) [Sulfolobus solfataricus 98/2] gi|13816089|gb|AAK42868.1| Pyruvate synthase delta chain (Pyruvic-ferredoxin oxidoreductase delta chain) (porD-2) [Sulfolobus solfataricus P2] Length = 94 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 26/75 (34%), Gaps = 11/75 (14%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G + + +CI CK C CP I +G +D C CG+ Sbjct: 30 GAWRIVKPVVDYSKCIGCKACFMFCPESTIVPSNGKV-----------RVDYEYCKGCGV 78 Query: 109 CQEACPVDAIVEGPN 123 C CPV AI Sbjct: 79 CANVCPVKAISMVSE 93 >gi|89097591|ref|ZP_01170480.1| dihydropyrimidine dehydrogenase [Bacillus sp. NRRL B-14911] gi|89087887|gb|EAR66999.1| dihydropyrimidine dehydrogenase [Bacillus sp. NRRL B-14911] Length = 429 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 19/63 (30%), Gaps = 4/63 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117 + CI C C C + +G C+ C LC CP + A Sbjct: 338 DPDICINCNKCHIACEDTSHQCIDMLVDENGKEYLKV---REEDCVGCNLCSIVCPEEGA 394 Query: 118 IVE 120 I Sbjct: 395 ISM 397 >gi|118579914|ref|YP_901164.1| hydrogenases, Fe-only [Pelobacter propionicus DSM 2379] gi|118502624|gb|ABK99106.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Pelobacter propionicus DSM 2379] Length = 601 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 5/71 (7%) Query: 59 GEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 +C+ C C +C AI + I ++C+ CG C CP Sbjct: 146 DPNKCVLCGDCARMCSEIQGIGAIDFAHRGHDAAVLPAFGK-KIGEVECVNCGQCTIVCP 204 Query: 115 VDAIVEGPNFE 125 ++ P E Sbjct: 205 TGSLCLKPEME 215 >gi|332298288|ref|YP_004440210.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein [Treponema brennaborense DSM 12168] gi|332181391|gb|AEE17079.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein [Treponema brennaborense DSM 12168] Length = 411 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 6/62 (9%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + + C CK+C ++C AI+ ES ID KCI CG C++ Sbjct: 1 MFLDDGVKSGCCGCKVCASVCKTNAISFESDEEGFWYP------IIDGNKCIDCGQCRKV 54 Query: 113 CP 114 CP Sbjct: 55 CP 56 >gi|307354648|ref|YP_003895699.1| nitroreductase [Methanoplanus petrolearius DSM 11571] gi|307157881|gb|ADN37261.1| nitroreductase [Methanoplanus petrolearius DSM 11571] Length = 272 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 10/82 (12%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + EE C C +C CP ++ KCI CG C+ Sbjct: 1 METITVDEELCTRCGICSEACPTGIVSPAGENTLPGVPGEMS------EKCIRCGHCEAF 54 Query: 113 CPVDAIVEGPNFEFATETRQEL 134 CP A++ F+ E +++L Sbjct: 55 CPTGALIL----NFSPEEKEDL 72 >gi|260892888|ref|YP_003238985.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ammonifex degensii KC4] gi|260865029|gb|ACX52135.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ammonifex degensii KC4] Length = 656 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 33/111 (29%), Gaps = 14/111 (12%) Query: 24 LRYFFKA----KTTINYPFEKGSTSPRFRGEHALRRYPNG---EERCIACKLCEAICPAQ 76 L+ K YP F G ++ +E+C C CE +CP + Sbjct: 199 LKQLLKKVAQHPKIRLYPATTLEEVEGFVGNWKVKVKQRPLLVDEKCDRCGRCEEVCPVE 258 Query: 77 AITIE-------SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 RY +D+ C CG C + CP I Sbjct: 259 VPDSFNYGLSLRKAIYFPHPDAFPSRYAVDLDHCTKCGECVKVCPRGLINL 309 Score = 38.5 bits (88), Expect = 0.27, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 13/73 (17%) Query: 48 RGEHALRRYPNGEER--CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 RG L + C C +C C A+ ++ G +++ C Sbjct: 572 RGHVELEPFVAEVYPERCNGCGICLEECSYGALKLKDGKV-----------EVNEAVCQG 620 Query: 106 CGLCQEACPVDAI 118 CG C CP A+ Sbjct: 621 CGACAAMCPQMAL 633 >gi|294934924|ref|XP_002781266.1| hypothetical protein Pmar_PMAR027580 [Perkinsus marinus ATCC 50983] gi|239891687|gb|EER13061.1| hypothetical protein Pmar_PMAR027580 [Perkinsus marinus ATCC 50983] Length = 387 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 28/120 (23%), Positives = 38/120 (31%), Gaps = 30/120 (25%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAI---------------TIESGPRCHDGTRRTVR 95 AL ++C C +C CP I T +S + Sbjct: 94 VALMIPIVDMDKCTQCNICSMSCPHACIRPFLLSQAEDDAKPSTFDSRKAKGGAEVAGLH 153 Query: 96 YDID--MIKCIYCGLCQEACPVDAIVE----------GPNFEFATE--TRQELYYDKERL 141 Y I + C C C ACP DA+ PN+E+A R +DK L Sbjct: 154 YRIQVSPLDCTGCETCVNACPYDALRMEHLADFEDIEKPNWEYAVSLPDRSSR-FDKTTL 212 >gi|168181125|ref|ZP_02615789.1| iron-sulfur cluster-binding protein [Clostridium botulinum NCTC 2916] gi|182668040|gb|EDT80019.1| iron-sulfur cluster-binding protein [Clostridium botulinum NCTC 2916] Length = 387 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 5/58 (8%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+CI C C +CP + I+ + +M KCI C CQE CP AI Sbjct: 319 EKCIGCNRCAEVCPEKPYVIDMIKKEGKKIPVW-----NMKKCIRCFCCQELCPKGAI 371 >gi|116235052|dbj|BAF34975.1| trichloroethene reductive dehalogenase [uncultured Dehalococcoides sp.] gi|116235054|dbj|BAF34976.1| trichloroethene reductive dehalogenase [uncultured Dehalococcoides sp.] Length = 554 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 3/60 (5%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID---MIKCIYCGLCQEACPVD 116 E C C +C CP QAI+ E Y+ KCI C C+ CP Sbjct: 434 REFCKTCGICAEHCPNQAISHEGPRYDSPYWDNVSGYEGWHLDHHKCINCTNCETFCPFF 493 >gi|20091692|ref|NP_617767.1| heterodisulfide reductase, subunit A/methylviologen reducing hydrogenase, subunit delta [Methanosarcina acetivorans C2A] gi|41017214|sp|Q8TM02|HDRA_METAC RecName: Full=CoB--CoM heterodisulfide reductase 1 iron-sulfur subunit A gi|19916866|gb|AAM06247.1| heterodisulfide reductase, subunit A/methylviologen reducing hydrogenase, subunit delta [Methanosarcina acetivorans C2A] Length = 793 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 12/69 (17%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 ++CI C+ C +C I+IE+ +D + C CG C ACPV Sbjct: 574 HVDPDKCIGCRTCVEVCKFGKISIENKKAV-----------VDEVSCYGCGDCSAACPVG 622 Query: 117 AIVEGPNFE 125 AI NFE Sbjct: 623 AIQM-RNFE 630 Score = 41.6 bits (96), Expect = 0.041, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 30/101 (29%), Gaps = 11/101 (10%) Query: 29 KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88 T+ E S H + CK C +C P + Sbjct: 206 HPNITLYTYSEVTDISGSVGKFHVRVKRKPRFVLEDKCKGCVDLCSGVCPVEIENPMNYG 265 Query: 89 GTRRTVRYD-----------IDMIKCIYCGLCQEACPVDAI 118 + Y ID C+ CGLCQ ACP +A+ Sbjct: 266 IGKTRAIYMPIPQSVPQVVLIDPDHCVGCGLCQLACPAEAV 306 >gi|325119973|emb|CBZ55526.1| RNase L inhibitor, related [Neospora caninum Liverpool] Length = 613 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 1/67 (1%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 LR +RC K C C + +G C + + I CI CG+C + Sbjct: 16 RLRIAIVNGDRCKP-KKCRQECKRNCPVVRTGKLCIEADATSKIAFISEPLCIGCGICVK 74 Query: 112 ACPVDAI 118 CP +AI Sbjct: 75 KCPFEAI 81 >gi|190347874|gb|EDK40226.2| hypothetical protein PGUG_04324 [Meyerozyma guilliermondii ATCC 6260] Length = 607 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 25/56 (44%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 K C+ C +++G C + T + I CI CG+C + CP DAI Sbjct: 19 KKCKQECRKSCPVVKTGKLCIEVTPASKIAFISETLCIGCGICVKKCPFDAINIIN 74 >gi|164687260|ref|ZP_02211288.1| hypothetical protein CLOBAR_00901 [Clostridium bartlettii DSM 16795] gi|164603684|gb|EDQ97149.1| hypothetical protein CLOBAR_00901 [Clostridium bartlettii DSM 16795] Length = 584 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 10/66 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L Y E++C C C+ CP AI+ + ID CI CG C E Sbjct: 526 LISYDIVEDKCKGCGACKKKCPVSAISGNKKEA----------HVIDKNICIKCGKCMET 575 Query: 113 CPVDAI 118 C +AI Sbjct: 576 CKFNAI 581 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 8/69 (11%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 + I + + + YDI KC CG C++ CPV AI + Sbjct: 503 KYFRHEYEDHIYNKKCTAKACKSLISYDIVEDKCKGCGACKKKCPVSAI--------SGN 554 Query: 130 TRQELYYDK 138 ++ DK Sbjct: 555 KKEAHVIDK 563 >gi|144897651|emb|CAM74515.1| formate dehydrogenase, alpha subunit [Magnetospirillum gryphiswaldense MSR-1] Length = 928 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T +G R D +C+ CG C + Sbjct: 158 YFQYDPAKCIVCSRCVRACAEVQGTFALNVAGRGFDSRIRPGAAPDFMGSECVSCGACVQ 217 Query: 112 ACPVDAIVE 120 ACP ++E Sbjct: 218 ACPTATLIE 226 >gi|189423121|ref|YP_001950298.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter lovleyi SZ] gi|189419380|gb|ACD93778.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter lovleyi SZ] Length = 367 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 27/85 (31%), Gaps = 17/85 (20%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C AC LC C AI I G ID IKC C C CP A+ Sbjct: 192 RHCTACGLCIKACAHDAIRIVDGVAV-----------IDAIKCAGCSRCITVCPTKAVAI 240 Query: 121 GPNFEFATETRQELYYDKERLLNNG 145 N +L K +G Sbjct: 241 QWNEA------ADLVMKKMAEYASG 259 >gi|332982271|ref|YP_004463712.1| glutamate synthase (NADPH) GltB2 subunit [Mahella australiensis 50-1 BON] gi|332699949|gb|AEE96890.1| glutamate synthase (NADPH) GltB2 subunit [Mahella australiensis 50-1 BON] Length = 500 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 9/65 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E RCI C++C C + ++ + + D KC+ C C CP A+ Sbjct: 14 DENRCIQCQVCVRQCANEVHYLDE---------KDGKVKADDAKCVDCQRCVTFCPTHAL 64 Query: 119 VEGPN 123 PN Sbjct: 65 TIIPN 69 >gi|332799823|ref|YP_004461322.1| RnfABCDGE type electron transport complex subunit C [Tepidanaerobacter sp. Re1] gi|332697558|gb|AEE92015.1| electron transport complex, RnfABCDGE type, C subunit [Tepidanaerobacter sp. Re1] Length = 440 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 20/70 (28%), Gaps = 2/70 (2%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C C CP + G + + CI CG C CP I Sbjct: 362 EPSPCIRCARCVDACPINLLPTNLAKFTERGMWAEAE-NYHALDCIECGCCSYVCPAH-I 419 Query: 119 VEGPNFEFAT 128 + A Sbjct: 420 PLTQHIRVAK 429 >gi|307298643|ref|ZP_07578446.1| electron transport complex, RnfABCDGE type, C subunit [Thermotogales bacterium mesG1.Ag.4.2] gi|306915808|gb|EFN46192.1| electron transport complex, RnfABCDGE type, C subunit [Thermotogales bacterium mesG1.Ag.4.2] Length = 439 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 2/72 (2%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 ++ P E CI C C +CP + + ++ CI CG C Sbjct: 354 MKSDPLEEFPCIRCGKCATVCPMNLQPFLLNL-YGTNRLYDKQVENGLLDCIECGSCSYV 412 Query: 113 CPVDAIVEGPNF 124 CP + I NF Sbjct: 413 CPAN-IELVKNF 423 >gi|306819983|ref|ZP_07453634.1| 4Fe-4S ferredoxin [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304552019|gb|EFM39959.1| 4Fe-4S ferredoxin [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 277 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 26/112 (23%), Positives = 36/112 (32%), Gaps = 16/112 (14%) Query: 27 FFKAKTTINYPFEKGSTSPRFRGEHALRRY--PNGEERCIACKLCEAICPAQAITIESGP 84 F + N P G H R P ++C CKLC +CP AI Sbjct: 168 FSRPTVKGNNPVHPYFQPQDRNGNHIDIRKVKPKTNDKCTDCKLCAILCPTGAIDYNDVK 227 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN-FEFATETRQELY 135 C+ C C + CPV+A + + +ELY Sbjct: 228 SV-------------PGVCMKCCACVKKCPVNAKYFDDEGYLYHQRELEELY 266 >gi|302343604|ref|YP_003808133.1| Cobyrinic acid ac-diamide synthase [Desulfarculus baarsii DSM 2075] gi|301640217|gb|ADK85539.1| Cobyrinic acid ac-diamide synthase [Desulfarculus baarsii DSM 2075] Length = 291 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 30/88 (34%), Gaps = 17/88 (19%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C LC +C A ++ G ID C C LC CP AI Sbjct: 67 DCTGCGLCAELCAFGAARLDEGGLAV----------IDESACEGCKLCVAMCPAQAIDFP 116 Query: 122 P----NFEFATETRQELYYDKERLLNNG 145 P N+ + + + LL+ G Sbjct: 117 PRDCGNWHLSDTRLGPMVH---ALLHPG 141 >gi|294643271|ref|ZP_06721097.1| 4Fe-4S binding domain protein [Bacteroides ovatus SD CC 2a] gi|294806465|ref|ZP_06765306.1| 4Fe-4S binding domain protein [Bacteroides xylanisolvens SD CC 1b] gi|292641394|gb|EFF59586.1| 4Fe-4S binding domain protein [Bacteroides ovatus SD CC 2a] gi|294446328|gb|EFG14954.1| 4Fe-4S binding domain protein [Bacteroides xylanisolvens SD CC 1b] Length = 402 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 6/62 (9%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + + C C C +C AI G R V ++ CI CGLCQ+ Sbjct: 1 MMKEICQHNECTGCSACVNVCGKNAIFYCEDK---IGFRYPVV---NLDLCIDCGLCQKV 54 Query: 113 CP 114 CP Sbjct: 55 CP 56 >gi|289522475|ref|ZP_06439329.1| dihydroorotate dehydrogenase(DHOdehase) [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289504311|gb|EFD25475.1| dihydroorotate dehydrogenase(DHOdehase) [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 363 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 27/74 (36%), Gaps = 10/74 (13%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 + EE+CI C+ CE C AI + S + + C CG Sbjct: 300 KEPLVKVTPSVNEEKCIGCRRCEESCVYYAINVGSSGKAG----------VTTDACFGCG 349 Query: 108 LCQEACPVDAIVEG 121 LC CPV AI Sbjct: 350 LCYTRCPVGAITLS 363 >gi|268324146|emb|CBH37734.1| conserved hypothetical protein containing CobQ/CobB/MinD/ParA nucleotide binding domain, and 4Fe-4S binding domains [uncultured archaeon] Length = 284 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 26/81 (32%), Gaps = 11/81 (13%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 + + L N + C C C A C A+ + + Sbjct: 53 PVIEEIKPAYTLVPRVN-YDLCDYCGKCAAACEYNALVVVPQKEV----------MVFPE 101 Query: 102 KCIYCGLCQEACPVDAIVEGP 122 C CGLC CP DAI E P Sbjct: 102 LCHGCGLCSLICPQDAISEEP 122 >gi|260913865|ref|ZP_05920339.1| electron transport complex [Pasteurella dagmatis ATCC 43325] gi|260631952|gb|EEX50129.1| electron transport complex [Pasteurella dagmatis ATCC 43325] Length = 753 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 33/103 (32%), Gaps = 3/103 (2%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C CP + + + + CI CGLC CP I Sbjct: 375 QSCIRCSACSDACPVN-LMPQQLYWFARSEDHEKSEEYALHDCIECGLCAYVCPSH-IPL 432 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 F ++ ++ R+E+ R + + R Sbjct: 433 IQYFRQEKAKIWDIKEKAKQAEEAKQRFEARQAR-LEKEEQER 474 >gi|238753581|ref|ZP_04614943.1| Pyruvate-flavodoxin oxidoreductase [Yersinia ruckeri ATCC 29473] gi|238708133|gb|EEQ00489.1| Pyruvate-flavodoxin oxidoreductase [Yersinia ruckeri ATCC 29473] Length = 1176 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 38/165 (23%), Gaps = 39/165 (23%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A + C C C A C Sbjct: 646 MLAGLGDAL------PVSAFPPDGTWPLGTTQWEKRNIAENIPIWQPDLCTQCNHCVAAC 699 Query: 74 PAQAITIESGPRCHD----------------GTRRTVRYDIDMIKCIYCGLCQEACPV-- 115 P AI + P + + C C LC E CP Sbjct: 700 PHSAIRAKVVPPSAMTDAPASLHALDVKARDMRGQKYVLQVAPEDCTGCNLCYEVCPAKD 759 Query: 116 ------DAIVEGPNFEFATETRQELYY-------DKERLLNNGDR 147 AI P E + + DK +L R Sbjct: 760 RQNPAIKAINMQPRLAHLVEEKAHYNFFLQLPEIDKTQLERIDIR 804 >gi|229815904|ref|ZP_04446228.1| hypothetical protein COLINT_02960 [Collinsella intestinalis DSM 13280] gi|229808599|gb|EEP44377.1| hypothetical protein COLINT_02960 [Collinsella intestinalis DSM 13280] Length = 421 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 10/72 (13%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 ++ +RC C C CP A + +G + I+ CI CGL Sbjct: 308 ENVRVQFPEFDHDRCTMCGACVEACPTFACDLLNGGKLA----------IEPTYCIGCGL 357 Query: 109 CQEACPVDAIVE 120 C E C A+ Sbjct: 358 CAEVCSDHALKM 369 Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 21/52 (40%), Gaps = 12/52 (23%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 C C +CP AI IE G + C CGLC ACP +A Sbjct: 69 CHACMDVCPVNAIEIEDGAIDV------------LDSCRKCGLCVAACPTEA 108 >gi|254431766|ref|ZP_05045469.1| iron-sulfur cluster-binding protein [Cyanobium sp. PCC 7001] gi|197626219|gb|EDY38778.1| iron-sulfur cluster-binding protein [Cyanobium sp. PCC 7001] Length = 452 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 12/59 (20%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI-------YCGLCQEACP 114 C C++CE CP AI E ++ KC CG+C E CP Sbjct: 346 CRNCRICETNCPPHAIFSEKQTVRGQKKWY-----VNFDKCAPYFAETRGCGICIEVCP 399 >gi|160940739|ref|ZP_02088081.1| hypothetical protein CLOBOL_05633 [Clostridium bolteae ATCC BAA-613] gi|158436259|gb|EDP14026.1| hypothetical protein CLOBOL_05633 [Clostridium bolteae ATCC BAA-613] Length = 677 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 25/75 (33%), Gaps = 12/75 (16%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 +C C C C +AI + R I KCI CG C + CP A Sbjct: 11 TKCKHCYKCVRYCGVKAI-----------QVKDERAVIMPDKCILCGHCLKICPQSAKTL 59 Query: 121 GPNFEFA-TETRQEL 134 + R+ + Sbjct: 60 KSDLNMVRGFLREGM 74 >gi|154150422|ref|YP_001404040.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Candidatus Methanoregula boonei 6A8] gi|153998974|gb|ABS55397.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Methanoregula boonei 6A8] Length = 88 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 25/70 (35%), Gaps = 6/70 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIE------SGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 RC C C CP A+ + + +V D+ C CG+C Sbjct: 6 HVNMSRCTGCGNCVTACPVDALELWTLDPVTNEKIYQVQDGVSVHLDVKKELCAGCGVCV 65 Query: 111 EACPVDAIVE 120 EACP D I Sbjct: 66 EACPYDVIQL 75 >gi|15668693|ref|NP_247492.1| polyferredoxin [Methanocaldococcus jannaschii DSM 2661] gi|48474321|sp|P81293|Y51B_METJA RecName: Full=Uncharacterized polyferredoxin-like protein MJ0514.2 gi|2826291|gb|AAB98509.1| polyferredoxin [Methanocaldococcus jannaschii DSM 2661] Length = 408 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 25/114 (21%), Positives = 40/114 (35%), Gaps = 14/114 (12%) Query: 9 SFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKL 68 S +L EF + + K R+R + ++P +CI+C+ Sbjct: 7 SLWYLYEFAR------KKWIKRFIDAKSDKSSYIPPERYRKIPPIVKFPE---KCISCEG 57 Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ CPA AI + + ID C+ C C E CP + Sbjct: 58 CKESCPAFAIEMIYNEEYNK-----KLPVIDEGSCVACANCIEVCPTGVLEMDK 106 Score = 40.5 bits (93), Expect = 0.077, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 3/62 (4%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C+ C LC +C AI I + R+ + Y ID CI C +CQ+ C AI Sbjct: 244 ECVKCGLCIEVCSTTAIRIY---KPIIPKRKDICYVIDEDLCIGCRICQKVCGSGAIKIS 300 Query: 122 PN 123 Sbjct: 301 KE 302 Score = 38.5 bits (88), Expect = 0.34, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 9/65 (13%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 Y E+ CI C++C+ +C + AI I + I C+ G C C Sbjct: 273 ICYVIDEDLCIGCRICQKVCGSGAIKISKETKLPY---------IVPELCVRGGACAREC 323 Query: 114 PVDAI 118 PV AI Sbjct: 324 PVGAI 328 Score = 38.2 bits (87), Expect = 0.38, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 4/64 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDG----TRRTVRYDIDMIKCIYCGLCQEACP 114 E C+AC C +CP + ++ +G + ID C+ CG C+ ACP Sbjct: 83 DEGSCVACANCIEVCPTGVLEMDKHRVETEGLFFDKPKYSNLIIDEEVCVRCGNCERACP 142 Query: 115 VDAI 118 ++ I Sbjct: 143 INVI 146 Score = 37.8 bits (86), Expect = 0.55, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 28/75 (37%), Gaps = 11/75 (14%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 + T F + EE C+ C CE CP I R+ +Y I+ Sbjct: 108 RVETEGLFFDKPKYSNLIIDEEVCVRCGNCERACPINVIE-----------RKEGKYVIN 156 Query: 100 MIKCIYCGLCQEACP 114 M CI C C + CP Sbjct: 157 MALCISCKECIKVCP 171 Score = 35.5 bits (80), Expect = 2.5, Method: Composition-based stats. Identities = 15/51 (29%), Positives = 22/51 (43%) Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 A + +S + R+ KCI C C+E+CP AI N E+ Sbjct: 25 DAKSDKSSYIPPERYRKIPPIVKFPEKCISCEGCKESCPAFAIEMIYNEEY 75 >gi|99081333|ref|YP_613487.1| 4Fe-4S ferredoxin, iron-sulfur binding [Ruegeria sp. TM1040] gi|99037613|gb|ABF64225.1| 4Fe-4S ferredoxin iron-sulfur binding [Ruegeria sp. TM1040] Length = 247 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 9/67 (13%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 Y + + C C+ C CP A+ + +I C CGLC ACP Sbjct: 182 YVSLTDGCTLCQHCVWSCPTDAMHLGDTGNT---------LEIRDQACTGCGLCASACPE 232 Query: 116 DAIVEGP 122 + P Sbjct: 233 RVLSILP 239 Score = 33.9 bits (76), Expect = 7.8, Method: Composition-based stats. Identities = 11/41 (26%), Positives = 13/41 (31%) Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 PR Y C C C +CP DA+ G Sbjct: 168 PEPRAETEAPSVAGYVSLTDGCTLCQHCVWSCPTDAMHLGD 208 >gi|303249219|ref|ZP_07335456.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio fructosovorans JJ] gi|302489394|gb|EFL49345.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio fructosovorans JJ] Length = 652 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 7/66 (10%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 +RC+ C C CP +AI R + ++ C CGLC CP Sbjct: 578 HVDIKRCVGCGKCIMTCPFKAIK-------EVEFRGQKKAEVIETVCQGCGLCTSTCPQG 630 Query: 117 AIVEGP 122 AI Sbjct: 631 AIQLSH 636 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 25/87 (28%), Gaps = 13/87 (14%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRC--------HDGTRRTVRYDIDMIKCI---- 104 E C C C CP++ + + ID C Sbjct: 236 YVDWELCTGCGACTEKCPSKKNPDKFNENIGPTTSINIPFPQAIPKKAVIDPTTCRQFVK 295 Query: 105 -YCGLCQEACPVDAIVEGPNFEFATET 130 CG+C + CP AI E TE Sbjct: 296 GKCGVCAKVCPTGAIKYDMQDEIVTED 322 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 3/34 (8%) Query: 102 KCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 +C+ CG C CP AI EF + + E+ Sbjct: 583 RCVGCGKCIMTCPFKAI---KEVEFRGQKKAEVI 613 >gi|291519334|emb|CBK74555.1| electron transport complex, RnfABCDGE type, B subunit [Butyrivibrio fibrisolvens 16/4] Length = 263 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 29/83 (34%), Gaps = 11/83 (13%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P++ G + CI C CE +C + AI ++ Sbjct: 191 IPYDFGHAVRCHNNDKGKDVMAVCSVGCIGCHKCEKVCESDAIHVDG-----------FF 239 Query: 96 YDIDMIKCIYCGLCQEACPVDAI 118 ID KC CG C EACP I Sbjct: 240 AHIDQDKCTSCGKCAEACPRHII 262 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 5/66 (7%) Query: 59 GEERCIACKLCEAICPAQ-----AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 +E C AC C A+CP RCH+ + + + CI C C++ C Sbjct: 169 DKEACKACGKCVAVCPNHLIELIPYDFGHAVRCHNNDKGKDVMAVCSVGCIGCHKCEKVC 228 Query: 114 PVDAIV 119 DAI Sbjct: 229 ESDAIH 234 Score = 34.3 bits (77), Expect = 5.8, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 19/64 (29%), Gaps = 11/64 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C CP AI I G +D C CG C CP I Sbjct: 140 CSYGCMGFGSCVKACPFDAIHIIDGVAL-----------VDKEACKACGKCVAVCPNHLI 188 Query: 119 VEGP 122 P Sbjct: 189 ELIP 192 >gi|242237942|ref|YP_002986123.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Dickeya dadantii Ech703] gi|242129999|gb|ACS84301.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Dickeya dadantii Ech703] Length = 1170 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 22/78 (28%), Gaps = 14/78 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY 96 A++ E C C C ICP QA + Sbjct: 679 IAIQVPAWQPEGCTQCNQCAFICPHAAIRPALLSEDERQQAPVALQSKAANGAKGYHYHL 738 Query: 97 DIDMIKCIYCGLCQEACP 114 + + C CG C + CP Sbjct: 739 AVSPLDCSGCGNCVDICP 756 >gi|212637708|ref|YP_002314233.1| iron-sulfur binding 4Fe-4S ferredoxin [Shewanella piezotolerans WP3] gi|212559192|gb|ACJ31646.1| 4Fe-4S ferredoxin, iron-sulfur binding [Shewanella piezotolerans WP3] Length = 559 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 24/74 (32%), Gaps = 9/74 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C C C A CP A+T C+ CGLC CP I Sbjct: 425 NTESCTLCMSCVATCPTGALTDGGDLPALH---------FVEQDCVQCGLCDAGCPEKVI 475 Query: 119 VEGPNFEFATETRQ 132 P F +RQ Sbjct: 476 SLTPQVNFDKASRQ 489 Score = 38.9 bits (89), Expect = 0.22, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 24/73 (32%), Gaps = 15/73 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 C C CPA AI +ID C G C ACP AI ++ Sbjct: 196 CNRCLNFCPADAIASVEKK-----------IEIDPYLCHGAGSCTNACPTGAIS----YD 240 Query: 126 FATETRQELYYDK 138 T Y +K Sbjct: 241 LPTPQSMHTYLNK 253 >gi|146415250|ref|XP_001483595.1| hypothetical protein PGUG_04324 [Meyerozyma guilliermondii ATCC 6260] Length = 607 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 25/56 (44%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 K C+ C +++G C + T + I CI CG+C + CP DAI Sbjct: 19 KKCKQECRKSCPVVKTGKLCIEVTPASKIAFISETLCIGCGICVKKCPFDAINIIN 74 >gi|158319513|ref|YP_001512020.1| nitrite and sulphite reductase 4Fe-4S region [Alkaliphilus oremlandii OhILAs] gi|158139712|gb|ABW18024.1| nitrite and sulphite reductase 4Fe-4S region [Alkaliphilus oremlandii OhILAs] Length = 284 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 12/60 (20%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + RC+ CK C CP + IT E P+ IDM CI+CG C +ACP AI Sbjct: 153 EKGRCVGCKQCVRSCPDRMITAEDEPK------------IDMEGCIHCGRCIQACPTGAI 200 >gi|91772644|ref|YP_565336.1| cobyrinic acid a,c-diamide synthase [Methanococcoides burtonii DSM 6242] gi|91711659|gb|ABE51586.1| MinD /ParA family ATPase [Methanococcoides burtonii DSM 6242] Length = 290 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 14/71 (19%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 + L+ + CI C LC+ C AIT +D +C CG+C Sbjct: 55 FYGLKEAYIDDSLCIQCGLCKEACRFDAITDN--------------IKVDSFECEGCGVC 100 Query: 110 QEACPVDAIVE 120 CP AI Sbjct: 101 AHICPEGAITL 111 >gi|116753532|ref|YP_842650.1| glutamate synthase (NADPH) [Methanosaeta thermophila PT] gi|116664983|gb|ABK14010.1| glutamate synthase (NADPH) GltB2 subunit [Methanosaeta thermophila PT] Length = 497 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 14/105 (13%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C C+ CE C T ++ +C C C CP AI Sbjct: 15 DSCDRCRACEHQCSFGVHTYDASQDMMISDNY---------RCAGCQRCAVFCPKGAIEI 65 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWES--EIVRNIVTDSPYR 163 P + R + +ER+ + + E+ I+ +D P+R Sbjct: 66 RP---TPSFYRPNASWSRERIEDIKRQAETGGVILTGCGSDKPFR 107 >gi|58259273|ref|XP_567049.1| hypothetical protein CNA07330 [Cryptococcus neoformans var. neoformans JEC21] gi|134107419|ref|XP_777594.1| hypothetical protein CNBA7150 [Cryptococcus neoformans var. neoformans B-3501A] gi|50260288|gb|EAL22947.1| hypothetical protein CNBA7150 [Cryptococcus neoformans var. neoformans B-3501A] gi|57223186|gb|AAW41230.1| hypothetical protein CNA07330 [Cryptococcus neoformans var. neoformans JEC21] Length = 603 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 3/68 (4%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP---N 123 K C C ++ G C + + I CI CG+C + CP DAI N Sbjct: 19 KRCRQECKRSCPVVKMGKLCIEVNPNDKKAFISEELCIGCGICVKKCPFDAIQILNLPTN 78 Query: 124 FEFATETR 131 E R Sbjct: 79 LESHVTHR 86 >gi|325972702|ref|YP_004248893.1| PAS/PAC sensor protein [Spirochaeta sp. Buddy] gi|324027940|gb|ADY14699.1| putative PAS/PAC sensor protein [Spirochaeta sp. Buddy] Length = 603 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 11/72 (15%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + C C C CP +AI ++ G + +CIYCG C + Sbjct: 1 MIHPIYTELTECRDCYKCVRGCPVKAIQVKDGSAV-----------VVKDRCIYCGHCVD 49 Query: 112 ACPVDAIVEGPN 123 CP A + Sbjct: 50 ICPSHAKKIRND 61 >gi|305663975|ref|YP_003860263.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ignisphaera aggregans DSM 17230] gi|304378544|gb|ADM28383.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ignisphaera aggregans DSM 17230] Length = 75 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 31/75 (41%), Gaps = 10/75 (13%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 +E+CI C C A+CP + I I+ KC+ C C CP + Sbjct: 6 YVDQEKCIGCAQCYAVCPNKVFVIRDKKSIP----------INADKCVGCRACIVRCPTN 55 Query: 117 AIVEGPNFEFATETR 131 AI P +AT TR Sbjct: 56 AIRLTPRDIYATYTR 70 >gi|303238580|ref|ZP_07325114.1| hydrogenase, Fe-only [Acetivibrio cellulolyticus CD2] gi|302593978|gb|EFL63692.1| hydrogenase, Fe-only [Acetivibrio cellulolyticus CD2] Length = 594 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 7/85 (8%) Query: 59 GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDM--IKCIYCGLCQEACPV 115 +CI C+ CE C Q I SG +I M C YCG C + CP Sbjct: 163 DANKCIYCRRCETGCNEVQTCGILSGIGRGFNAHVGPFANIPMVESSCTYCGQCVQVCPT 222 Query: 116 DAIVEGPNFEFATETRQELYYDKER 140 A+ E + T+ E D ++ Sbjct: 223 AALTEV----YHTDKVWEALNDPDK 243 >gi|260881286|ref|ZP_05404060.2| putative 4Fe-4S binding domain protein [Mitsuokella multacida DSM 20544] gi|260849026|gb|EEX69033.1| putative 4Fe-4S binding domain protein [Mitsuokella multacida DSM 20544] Length = 206 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 10/57 (17%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 C+ C+ C ++CP IT+ H I+ C+ CG C E CPV AI Sbjct: 156 CVGCRRCLSVCPQACITMGENDCAH----------IEDSHCLSCGRCAEVCPVQAIH 202 >gi|218884559|ref|YP_002428941.1| putative ATPase RIL [Desulfurococcus kamchatkensis 1221n] gi|218766175|gb|ACL11574.1| putative ATPase RIL [Desulfurococcus kamchatkensis 1221n] Length = 602 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 21/67 (31%), Gaps = 6/67 (8%) Query: 59 GEERCIACKL---CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 C K C CP + + + I CI CG+C + CP Sbjct: 8 DRNYCKPDKCSLECIRFCPVNRGKRKKAIELSSDGKYVI---IYEETCIGCGICVKKCPF 64 Query: 116 DAIVEGP 122 +AI Sbjct: 65 NAISIVN 71 >gi|218130960|ref|ZP_03459764.1| hypothetical protein BACEGG_02562 [Bacteroides eggerthii DSM 20697] gi|317476271|ref|ZP_07935521.1| 4Fe-4S binding domain-containing protein [Bacteroides eggerthii 1_2_48FAA] gi|217986832|gb|EEC53164.1| hypothetical protein BACEGG_02562 [Bacteroides eggerthii DSM 20697] gi|316907545|gb|EFV29249.1| 4Fe-4S binding domain-containing protein [Bacteroides eggerthii 1_2_48FAA] Length = 286 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 8/81 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------DMIKCIYCGLCQ 110 E +C AC C CP I I + + CI CG C Sbjct: 169 DESKCTACGACAKACPRNIIEIRPQGKKSRRVYVQCVNKDKGAVARKACTVACIGCGKCV 228 Query: 111 EACPVDAIVEGPNFEFATETR 131 + CP +AI N + + Sbjct: 229 KVCPFEAITLENNLAYIDPNK 249 Score = 42.0 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 9/61 (14%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C C C AI + ++D KC CG C +ACP + I P Sbjct: 142 CLGCGDCVTACQFDAIHMNPETGLP---------EVDESKCTACGACAKACPRNIIEIRP 192 Query: 123 N 123 Sbjct: 193 Q 193 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 11/60 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C C +CP +AIT+E+ ID KC C C+E CP I Sbjct: 217 CTVACIGCGKCVKVCPFEAITLENNLAY-----------IDPNKCKSCRKCEEVCPQGTI 265 >gi|167772590|ref|ZP_02444643.1| hypothetical protein ANACOL_03969 [Anaerotruncus colihominis DSM 17241] gi|167665068|gb|EDS09198.1| hypothetical protein ANACOL_03969 [Anaerotruncus colihominis DSM 17241] Length = 595 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 27/96 (28%), Positives = 37/96 (38%), Gaps = 15/96 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 LRY F+ + + ++ L +Y +E+C C LC CP AI+ Sbjct: 512 TLRY-FRDEYIAHVVDKRCPAGVCKH----LLQYRIEKEKCKGCTLCARQCPVGAISGS- 565 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + ID KCI CG C E C AI Sbjct: 566 ---------VKNPHVIDQTKCIKCGACMEKCKFGAI 592 >gi|139438951|ref|ZP_01772411.1| Hypothetical protein COLAER_01417 [Collinsella aerofaciens ATCC 25986] gi|133775662|gb|EBA39482.1| Hypothetical protein COLAER_01417 [Collinsella aerofaciens ATCC 25986] Length = 603 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 31/95 (32%), Gaps = 7/95 (7%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQA---ITIESGPRCHDGTRRTVRYDIDMIKCIY 105 G ++CI C C +C + I + H R I C+ Sbjct: 150 GWDFDFPIIRDNDKCIKCMRCIKVCESVQGLGIWDLTNRATHTAVGTRGRAPIGKTDCVA 209 Query: 106 CGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140 CG C CP A+ E + E + D ++ Sbjct: 210 CGQCITHCPTGALRERDDTETVF----DAIADPDK 240 >gi|119896807|ref|YP_932020.1| electron transport complex protein RnfB [Azoarcus sp. BH72] gi|119669220|emb|CAL93133.1| probable electron transport complex protein RnfB [Azoarcus sp. BH72] Length = 175 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 20/61 (32%), Gaps = 10/61 (16%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C C CP AI + + C C C++ CP AI P Sbjct: 110 CIGCTKCYKSCPTDAILG----------AVKQVHTVIRDACTGCAKCEDVCPTGAITLSP 159 Query: 123 N 123 Sbjct: 160 I 160 >gi|330810232|ref|YP_004354694.1| dihydropyrimidine dehydrogenase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327378340|gb|AEA69690.1| putative dihydropyrimidine dehydrogenase [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 424 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 4/63 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117 ++ CI C C C + + + DGT + Y++ +C+ C LCQ CPV Sbjct: 341 DQQACIGCGRCHIACEDTSHQAIASLKQADGTHK---YEVIDEECVGCNLCQITCPVQDC 397 Query: 118 IVE 120 I Sbjct: 398 IEM 400 >gi|301064419|ref|ZP_07204844.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] gi|300441501|gb|EFK05841.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] Length = 369 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 11/59 (18%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++C+ C C C AI+++ I+ KC+ CG C CP +AI Sbjct: 193 RKKCVGCGDCVRHCAGSAISLKEKKAF-----------INTEKCVGCGECILICPNEAI 240 >gi|295112089|emb|CBL28839.1| hydrogenases, Fe-only [Synergistetes bacterium SGP1] Length = 568 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 20/63 (31%), Gaps = 3/63 (4%) Query: 59 GEERCIACKLCEAICPAQAITIE---SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 +CI C C +C R + +CI CG C CP Sbjct: 141 NPNKCILCGDCVRVCREIQGMGILDFVNRGSEARVRPAFNEPMIHTRCISCGQCAAVCPT 200 Query: 116 DAI 118 +AI Sbjct: 201 NAI 203 >gi|295094467|emb|CBK83558.1| Iron only hydrogenase large subunit, C-terminal domain [Coprococcus sp. ART55/1] Length = 484 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 22/70 (31%), Gaps = 8/70 (11%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY--------DIDMIKCIYCGL 108 +C C C CP AI P + ID KCI CG Sbjct: 125 YIDPSKCKECGQCAKACPYNAIADLMRPCIKSCPVGAISVAENGTGIAVIDKDKCIDCGS 184 Query: 109 CQEACPVDAI 118 C CP AI Sbjct: 185 CIHKCPFGAI 194 Score = 37.4 bits (85), Expect = 0.74, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 13/60 (21%) Query: 61 ERCIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C C+ C AI++ ID KC CG C +ACP +AI Sbjct: 98 DNCQKCMGRACQQACRFGAISMGRDKSY-----------IDPSKCKECGQCAKACPYNAI 146 >gi|266619056|ref|ZP_06111991.1| sigma-54 dependent transcriptional regulator [Clostridium hathewayi DSM 13479] gi|288869439|gb|EFD01738.1| sigma-54 dependent transcriptional regulator [Clostridium hathewayi DSM 13479] Length = 577 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 11/57 (19%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 +C C C C +AI + R +I KCI CG C + CP A Sbjct: 9 TKCKHCYKCVRNCEVKAI-----------MIKDERAEIMPDKCILCGKCMQVCPQSA 54 >gi|237843379|ref|XP_002370987.1| ABC transporter, putative [Toxoplasma gondii ME49] gi|211968651|gb|EEB03847.1| ABC transporter, putative [Toxoplasma gondii ME49] gi|221481811|gb|EEE20181.1| ABC transporter, putative [Toxoplasma gondii GT1] gi|221502311|gb|EEE28044.1| ABC transporter, putative [Toxoplasma gondii VEG] Length = 613 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 1/67 (1%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 LR +RC K C C + +G C + + I CI CG+C + Sbjct: 16 RLRIAIVNADRCKP-KKCRQECKRNCPVVRTGKLCIEADATSKIAFISEPLCIGCGICVK 74 Query: 112 ACPVDAI 118 CP +AI Sbjct: 75 KCPFEAI 81 >gi|218780897|ref|YP_002432215.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfatibacillum alkenivorans AK-01] gi|218762281|gb|ACL04747.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfatibacillum alkenivorans AK-01] Length = 363 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 11/62 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 EE CI C C CP A T +D +CI CGLC CP +A+ Sbjct: 277 NEEECINCGTCVERCPMDAFTEGED-----------VISVDPGRCIGCGLCTTTCPTEAL 325 Query: 119 VE 120 Sbjct: 326 SL 327 Score = 37.8 bits (86), Expect = 0.45, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 4/61 (6%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C+ C I + + P+ + +CI CG C E CP+DA EG Sbjct: 245 CNCCRECCGILK----SFKFFPKPALMATSDYVVQFNEEECINCGTCVERCPMDAFTEGE 300 Query: 123 N 123 + Sbjct: 301 D 301 >gi|77919203|ref|YP_357018.1| NADP-reducing hydrogenase subunit C [Pelobacter carbinolicus DSM 2380] gi|77545286|gb|ABA88848.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Pelobacter carbinolicus DSM 2380] Length = 486 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 10/67 (14%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 L Y +++C+ C LC +CP I+ + + ID CI CG C + Sbjct: 427 ELLEYTVVDQKCVGCTLCAKVCPVNCISGKPKE----------VHVIDQAACIKCGACLD 476 Query: 112 ACPVDAI 118 C DAI Sbjct: 477 KCKFDAI 483 Score = 38.5 bits (88), Expect = 0.31, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 17/44 (38%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + + Y + KC+ C LC + CPV+ I P Sbjct: 414 HVIDKKCPAGVCAELLEYTVVDQKCVGCTLCAKVCPVNCISGKP 457 >gi|11498296|ref|NP_069522.1| iron-sulfur cluster binding protein [Archaeoglobus fulgidus DSM 4304] gi|2649926|gb|AAB90550.1| iron-sulfur cluster binding protein [Archaeoglobus fulgidus DSM 4304] Length = 368 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 10/89 (11%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RCIAC +C CP +AI + +D KC+ CG+C CP++AI Sbjct: 285 DTSRCIACGICMLRCPMKAIKAKINREPAS---------VDAEKCLGCGVCVPTCPMEAI 335 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDR 147 E E + Y +E L + G Sbjct: 336 ELVERDEL-LELPDGMTYVQELLADKGRD 363 >gi|75761864|ref|ZP_00741792.1| Formate dehydrogenase alpha chain [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490647|gb|EAO53935.1| Formate dehydrogenase alpha chain [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 254 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 5/91 (5%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 YP+E + Y +CIAC C +C + R Sbjct: 136 HQKYPYE--PKVDVSEVDMTHPFYRYDPNQCIACGQCVEVCQNLQVNETLSIDWEAERPR 193 Query: 93 TVR---YDIDMIKCIYCGLCQEACPVDAIVE 120 + +I+ C+ CG C CP +A++E Sbjct: 194 VIWDEGVNINDSSCVSCGQCVTICPCNALME 224 Score = 35.1 bits (79), Expect = 3.5, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 19/71 (26%), Gaps = 11/71 (15%) Query: 54 RRYPNGEERCIAC----KLCEAI-------CPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R N C C C+ Q E + Y D + Sbjct: 104 RLLENHLLYCTVCDNNNGNCKLHNTAELMEIEHQKYPYEPKVDVSEVDMTHPFYRYDPNQ 163 Query: 103 CIYCGLCQEAC 113 CI CG C E C Sbjct: 164 CIACGQCVEVC 174 >gi|68468947|ref|XP_721532.1| RNAse L inhibitor-type ATP binding cassette protein [Candida albicans SC5314] gi|68469496|ref|XP_721261.1| RNAse L inhibitor-type ATP binding cassette protein [Candida albicans SC5314] gi|46443170|gb|EAL02454.1| RNAse L inhibitor-type ATP binding cassette protein [Candida albicans SC5314] gi|46443452|gb|EAL02734.1| RNAse L inhibitor-type ATP binding cassette protein [Candida albicans SC5314] gi|238879189|gb|EEQ42827.1| ATP-binding cassette sub-family E member 1 [Candida albicans WO-1] Length = 622 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 25/56 (44%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 K C+ C +++G C + T + I CI CG+C + CP DAI Sbjct: 34 KKCKQECRKSCPVVKTGKLCIEVTPASKIAFISETLCIGCGICVKKCPFDAITIIN 89 >gi|327401002|ref|YP_004341841.1| methyl-viologen-reducing hydrogenase subunit delta [Archaeoglobus veneficus SNP6] gi|327316510|gb|AEA47126.1| methyl-viologen-reducing hydrogenase delta subunit [Archaeoglobus veneficus SNP6] Length = 793 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 12/62 (19%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 E C C LC+ +C AI + G C CG C ACP +A+ Sbjct: 570 PELCFGCNLCKEVCDFNAIDMAWGKAYVKPN------------CTGCGACAAACPTNAMQ 617 Query: 120 EG 121 G Sbjct: 618 IG 619 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 7/65 (10%) Query: 63 CIACKLCEAICPAQAIT-------IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 C C +C +CP + ++Y ID C+ CG+C + C Sbjct: 240 CTGCGVCATLCPVEVPNEFEMGLANRKAIYIPFPQAVPLQYTIDAEHCLGCGMCSDVCSA 299 Query: 116 DAIVE 120 AI Sbjct: 300 SAIDF 304 >gi|308094766|ref|ZP_07663043.1| electron transport complex protein RnfC [Vibrio parahaemolyticus AN-5034] gi|308093502|gb|EFO43197.1| electron transport complex protein RnfC [Vibrio parahaemolyticus AN-5034] Length = 772 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 1/53 (1%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 CI C C CPA + + ++++ CI CG C CP Sbjct: 280 ECIRCGQCAEACPAS-LLPQQLQWHAKAEEYDKLEELNLKDCIECGACAFVCP 331 Score = 35.1 bits (79), Expect = 2.9, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 19/43 (44%) Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + +Q ++ TR + ++CI CG C EACP Sbjct: 250 LPHSQVPITKTANCILAPTRHEISAHQYEMECIRCGQCAEACP 292 >gi|292492467|ref|YP_003527906.1| formate dehydrogenase, subunit alpha [Nitrosococcus halophilus Nc4] gi|291581062|gb|ADE15519.1| formate dehydrogenase, alpha subunit [Nitrosococcus halophilus Nc4] Length = 936 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 5/65 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114 + CI C C C + + G T+ +D + C+ CG C +ACP Sbjct: 149 NLDACIQCTRCVRACREE-QVNDVIGYAFRGPHSTIVFDQGDPMGESTCVACGECVQACP 207 Query: 115 VDAIV 119 A++ Sbjct: 208 TGALM 212 >gi|288561259|ref|YP_003424745.1| energy-converting hydrogenase B subunit L EhbL [Methanobrevibacter ruminantium M1] gi|288543969|gb|ADC47853.1| energy-converting hydrogenase B subunit L EhbL [Methanobrevibacter ruminantium M1] Length = 222 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%) Query: 59 GEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 E+ CI C C +CP A+T+ ++ + +G +T ++D KC+ C C + CP Sbjct: 47 DEQACIGCGGCANVCPTGAVTMKPLQTPVKIKEGWVKTEVPELDPFKCVVCYWCHDFCP 105 Score = 38.2 bits (87), Expect = 0.36, Method: Composition-based stats. Identities = 9/20 (45%), Positives = 10/20 (50%) Query: 103 CIYCGLCQEACPVDAIVEGP 122 CI CG C CP A+ P Sbjct: 51 CIGCGGCANVCPTGAVTMKP 70 >gi|258516623|ref|YP_003192845.1| formate dehydrogenase, alpha subunit [Desulfotomaculum acetoxidans DSM 771] gi|257780328|gb|ACV64222.1| formate dehydrogenase, alpha subunit [Desulfotomaculum acetoxidans DSM 771] Length = 900 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 3/65 (4%) Query: 59 GEERCIACKLCEAIC-PAQAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLCQEACPV 115 +CI C C C Q + + D+ +C++CG C CPV Sbjct: 144 DMNKCILCGKCVRACAEVQGRGVIDFAYRGFNAKVATAMDLPLIESECVFCGSCVAVCPV 203 Query: 116 DAIVE 120 A+ E Sbjct: 204 GALTE 208 >gi|227012832|gb|ACP09042.1| RnfC-related protein [Vibrio cholerae O395] Length = 800 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 29/109 (26%), Gaps = 20/109 (18%) Query: 13 LKEFVGA---FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69 L + L + P K + + L N CI C C Sbjct: 360 LPRLIMGGPMMGFTLPH-------AQVPITKTANCILAPTRNELTSSDNEMA-CIRCGQC 411 Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMI----KCIYCGLCQEACP 114 CP + P+ + +D CI CG C CP Sbjct: 412 AEACPVSLL-----PQQLQWHAKAEEFDKCEELDLKDCIECGACAYVCP 455 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 10/13 (76%), Positives = 10/13 (76%) Query: 103 CIYCGLCQEACPV 115 CI CG C EACPV Sbjct: 405 CIRCGQCAEACPV 417 >gi|218670322|ref|ZP_03519993.1| dihydropyrimidine dehydrogenase [Rhizobium etli GR56] Length = 179 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/94 (17%), Positives = 32/94 (34%), Gaps = 6/94 (6%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI C C A S + +++ +C+ Sbjct: 72 QYLNLNYVAKAKIDQDACIKCGRCHI-----ACEDTSHQAITNVVNGLRHFEVIDEECVG 126 Query: 106 CGLCQEACPV-DAIVEGPNFEFATETRQELYYDK 138 C LC CPV + I + + R D Sbjct: 127 CNLCVSVCPVENCITMEQLPAGSLDKRTGRVVDP 160 >gi|169342408|ref|ZP_02863472.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium perfringens C str. JGS1495] gi|169299528|gb|EDS81592.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium perfringens C str. JGS1495] Length = 273 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 25/70 (35%), Positives = 30/70 (42%), Gaps = 11/70 (15%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 N CI CKLCE CP++AI +E+ ID KC CG+C C Sbjct: 210 IVNQNCSVGCIGCKLCEKNCPSEAIRVENNLAI-----------IDYEKCTSCGICVSKC 258 Query: 114 PVDAIVEGPN 123 P AI N Sbjct: 259 PKKAINLREN 268 Score = 37.0 bits (84), Expect = 0.88, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 5/78 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCIYCGLCQEAC 113 +C+ACK C CP I I + + + + CI C LC++ C Sbjct: 170 DSSKCVACKACVRACPQNLIDIIKEDQKVIVSCNSNDSGKIVNQNCSVGCIGCKLCEKNC 229 Query: 114 PVDAIVEGPNFEFATETR 131 P +AI N + Sbjct: 230 PSEAIRVENNLAIIDYEK 247 >gi|220920301|ref|YP_002495602.1| formate dehydrogenase subunit alpha [Methylobacterium nodulans ORS 2060] gi|219944907|gb|ACL55299.1| formate dehydrogenase, alpha subunit [Methylobacterium nodulans ORS 2060] Length = 952 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 2/68 (2%) Query: 55 RYPNGEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + +CI C C C + R D + +C+ CG C +A Sbjct: 164 YFTYDPAKCIVCNRCVRACEEVQGTFALTIAGRGFDSRVAAGPTNFFESECVSCGACVQA 223 Query: 113 CPVDAIVE 120 CP + E Sbjct: 224 CPTATLQE 231 >gi|15641030|ref|NP_230661.1| electron transport complex protein RnfC [Vibrio cholerae O1 biovar El Tor str. N16961] gi|227081189|ref|YP_002809740.1| RnfC-related protein [Vibrio cholerae M66-2] gi|229505386|ref|ZP_04394896.1| electron transport complex protein RnfC [Vibrio cholerae BX 330286] gi|229510944|ref|ZP_04400423.1| electron transport complex protein RnfC [Vibrio cholerae B33] gi|229608405|ref|YP_002879053.1| electron transport complex protein RnfC [Vibrio cholerae MJ-1236] gi|9655479|gb|AAF94176.1| RnfC-related protein [Vibrio cholerae O1 biovar El Tor str. N16961] gi|227009077|gb|ACP05289.1| RnfC-related protein [Vibrio cholerae M66-2] gi|229350909|gb|EEO15850.1| electron transport complex protein RnfC [Vibrio cholerae B33] gi|229357609|gb|EEO22526.1| electron transport complex protein RnfC [Vibrio cholerae BX 330286] gi|229371060|gb|ACQ61483.1| electron transport complex protein RnfC [Vibrio cholerae MJ-1236] Length = 801 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 29/109 (26%), Gaps = 20/109 (18%) Query: 13 LKEFVGA---FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69 L + L + P K + + L N CI C C Sbjct: 360 LPRLIMGGPMMGFTLPH-------AQVPITKTANCILAPTRNELTSSDNEMA-CIRCGQC 411 Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMI----KCIYCGLCQEACP 114 CP + P+ + +D CI CG C CP Sbjct: 412 AEACPVSLL-----PQQLQWHAKAEEFDKCEELDLKDCIECGACAYVCP 455 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 10/13 (76%), Positives = 10/13 (76%) Query: 103 CIYCGLCQEACPV 115 CI CG C EACPV Sbjct: 405 CIRCGQCAEACPV 417 >gi|325280763|ref|YP_004253305.1| ferredoxin [Odoribacter splanchnicus DSM 20712] gi|324312572|gb|ADY33125.1| ferredoxin [Odoribacter splanchnicus DSM 20712] Length = 56 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 11/58 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI+C CE CP AI++ + Y+ID C CG C CPV+AI Sbjct: 7 DDCISCGTCEGECPVGAISMGAD-----------HYEIDPNACTDCGTCAGVCPVEAI 53 >gi|323692574|ref|ZP_08106807.1| hypothetical protein HMPREF9475_01670 [Clostridium symbiosum WAL-14673] gi|323503440|gb|EGB19269.1| hypothetical protein HMPREF9475_01670 [Clostridium symbiosum WAL-14673] Length = 599 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 11/77 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 +R E +C+ C C C +A+ I+ G R ++ KC+ CG C Sbjct: 1 MRIIDFKESKCMHCYKCVRYCDVKAVMIKDG-----------RAEVIEDKCVLCGHCLHV 49 Query: 113 CPVDAIVEGPNFEFATE 129 CP A + + Sbjct: 50 CPQSAKTMASDLDTVKY 66 >gi|323483612|ref|ZP_08088996.1| hypothetical protein HMPREF9474_00745 [Clostridium symbiosum WAL-14163] gi|323403039|gb|EGA95353.1| hypothetical protein HMPREF9474_00745 [Clostridium symbiosum WAL-14163] Length = 599 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 11/77 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 +R E +C+ C C C +A+ I+ G R ++ KC+ CG C Sbjct: 1 MRIIDFKESKCMHCYKCVRYCDVKAVMIKDG-----------RAEVIEDKCVLCGHCLHV 49 Query: 113 CPVDAIVEGPNFEFATE 129 CP A + + Sbjct: 50 CPQSAKTMASDLDTVKY 66 >gi|297616922|ref|YP_003702081.1| NIL domain protein [Syntrophothermus lipocalidus DSM 12680] gi|297144759|gb|ADI01516.1| NIL domain protein [Syntrophothermus lipocalidus DSM 12680] Length = 139 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 10/70 (14%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 EE CI C C + CP A+ I + D +C+ CG+C + CP A Sbjct: 80 WHEEICIQCGACASFCPTGALEITDREKMEVSF--------DNSRCVVCGMCLDCCPTRA 131 Query: 118 IVEGPNFEFA 127 + FE A Sbjct: 132 VKLH--FEVA 139 >gi|326790679|ref|YP_004308500.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427] gi|326541443|gb|ADZ83302.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427] Length = 624 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 27/70 (38%), Gaps = 10/70 (14%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 LR+ E C C C CP AI+ + + ID KCI CG C Sbjct: 564 QKLRQIYIDEVLCKGCSKCARSCPVGAISGQIKKP----------FKIDEKKCIKCGACI 613 Query: 111 EACPVDAIVE 120 AC A+ E Sbjct: 614 GACAFKAVKE 623 Score = 33.9 bits (76), Expect = 8.1, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 16/40 (40%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 I ++ + ID + C C C +CPV AI Sbjct: 552 HIVDKKCPSKTCQKLRQIYIDEVLCKGCSKCARSCPVGAI 591 >gi|255745043|ref|ZP_05418993.1| iron-sulfur cluster-binding protein [Vibrio cholera CIRS 101] gi|255737514|gb|EET92909.1| iron-sulfur cluster-binding protein [Vibrio cholera CIRS 101] Length = 504 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 9/75 (12%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C A+CP +A+ + C+ CGLC +ACP + Sbjct: 369 SDCTLCMSCVAVCPTRALHLAGDSPA---------LRFIEQDCVQCGLCVKACPEQVLSA 419 Query: 121 GPNFEFATETRQELY 135 P + RQ + Sbjct: 420 TPQLNWNKAARQGVV 434 Score = 40.9 bits (94), Expect = 0.062, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 12/80 (15%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 C+ C CPA A++ E + R I+ C G C ACP +AI Sbjct: 137 CERCVDACPAGALSSEGSEQTGH------RIQINPYLCQGVGTCATACPTEAIH------ 184 Query: 126 FATETRQELYYDKERLLNNG 145 +A + ERLL N Sbjct: 185 YALPNPTDTQKFIERLLANY 204 Score = 33.9 bits (76), Expect = 7.4, Method: Composition-based stats. Identities = 6/24 (25%), Positives = 8/24 (33%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVE 120 + C C C CP A+ Sbjct: 365 ECQTSDCTLCMSCVAVCPTRALHL 388 >gi|240102569|ref|YP_002958878.1| hypothetical protein TGAM_0512 [Thermococcus gammatolerans EJ3] gi|239910123|gb|ACS33014.1| 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase), containing one PUA domain and 2 4Fe-4S binding domains [Thermococcus gammatolerans EJ3] Length = 634 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 17/93 (18%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 FF P E+ + S + + A C+ C +C CP +A++I+ Sbjct: 550 EFFTRTRKAKAPDEREAVSAYYLVKRA--------YECVGCGVCVGKCPEEALSIDE--- 598 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ + +D +C +C C E CP+ I Sbjct: 599 ------KSKKIVVDWNRCTHCRECMEVCPLLKI 625 >gi|255659119|ref|ZP_05404528.1| ferredoxin hydrogenase [Mitsuokella multacida DSM 20544] gi|260848564|gb|EEX68571.1| ferredoxin hydrogenase [Mitsuokella multacida DSM 20544] Length = 589 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 24/70 (34%), Gaps = 3/70 (4%) Query: 59 GEERCIACKLCEAICPA---QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 +CI C C C A +G ++ CI CG C CP Sbjct: 156 DPSKCIRCGRCIRACKDVQGIAALTYAGRSSDIVVTTAYNKPMETTDCILCGQCSLVCPT 215 Query: 116 DAIVEGPNFE 125 A+VE + E Sbjct: 216 GALVEKDDTE 225 >gi|187932889|ref|YP_001884306.1| hydrogenase-1 [Clostridium botulinum B str. Eklund 17B] gi|187721042|gb|ACD22263.1| hydrogenase-1 [Clostridium botulinum B str. Eklund 17B] Length = 576 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 3/70 (4%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPV 115 +C+ C CEA C + T +G ++ + D C+ CG C ACPV Sbjct: 144 DRSKCVLCGRCEAACSEKTATNSIKIIDDNGDKKVATIEGKCFDDTNCLLCGQCIAACPV 203 Query: 116 DAIVEGPNFE 125 DA+ E + E Sbjct: 204 DALSEKSHTE 213 Score = 35.1 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 31/100 (31%), Gaps = 6/100 (6%) Query: 20 FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79 L + K I EK + + R L ++ C + CE + Sbjct: 59 LALSCETLVQDKMVIRTDSEKVQEAIKLRVAEMLDKHEFKCGPCKRREDCEFLKLVIKTK 118 Query: 80 IESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEAC 113 + + D ID KC+ CG C+ AC Sbjct: 119 ARANKPFIVKDKSQYVDDRSKSIVIDRSKCVLCGRCEAAC 158 >gi|154151012|ref|YP_001404630.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Candidatus Methanoregula boonei 6A8] gi|153999564|gb|ABS55987.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Methanoregula boonei 6A8] Length = 87 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 23/71 (32%), Gaps = 6/71 (8%) Query: 57 PNGEERCIACKLCEAICPAQA------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 RC C C CP A + H +++ D+ C CG+C Sbjct: 6 HVNMSRCTGCGNCVVACPVNALELYTIDPVTKEKIYHVLNGKSINLDVRTELCAGCGVCV 65 Query: 111 EACPVDAIVEG 121 ACP I Sbjct: 66 GACPYKVISLS 76 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 16/34 (47%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 ++M +C CG C ACPV+A+ E Sbjct: 6 HVNMSRCTGCGNCVVACPVNALELYTIDPVTKEK 39 >gi|153930946|ref|YP_001382420.1| iron-sulfur cluster-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153936038|ref|YP_001385972.1| iron-sulfur cluster-binding protein [Clostridium botulinum A str. Hall] gi|152926990|gb|ABS32490.1| iron-sulfur cluster-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152931952|gb|ABS37451.1| iron-sulfur cluster-binding protein [Clostridium botulinum A str. Hall] Length = 387 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 5/58 (8%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+CI C C +CP + I+ + +M KCI C CQE CP AI Sbjct: 319 EKCIGCNRCAEVCPEKPYVIDMIKKGGKKIPVW-----NMKKCIRCFCCQELCPKGAI 371 >gi|94498903|ref|ZP_01305441.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Oceanobacter sp. RED65] gi|94428535|gb|EAT13507.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Oceanobacter sp. RED65] Length = 195 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 10/62 (16%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C CP AI + + + +C C LC + CPVD I Sbjct: 115 DECIGCTKCIQACPVDAILGAAKQ----------MHTVIEDECTGCDLCLDPCPVDCIDM 164 Query: 121 GP 122 P Sbjct: 165 LP 166 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 12/21 (57%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 I +CI C C +ACPVDAI Sbjct: 112 IREDECIGCTKCIQACPVDAI 132 >gi|88603099|ref|YP_503277.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methanospirillum hungatei JF-1] gi|88188561|gb|ABD41558.1| CoB--CoM heterodisulfide reductase subunit A [Methanospirillum hungatei JF-1] Length = 671 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 28/80 (35%), Gaps = 9/80 (11%) Query: 45 PRFRGEHALRRYP--NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 P GE L Y +E C C +C +CP A+++ + K Sbjct: 580 PIHMGEVELEPYFAMCIDELCAGCGMCVNLCPYSALSLGEK-------NGRTVMVVTEAK 632 Query: 103 CIYCGLCQEACPVDAIVEGP 122 C CG C CP AI Sbjct: 633 CKGCGTCGGFCPGGAIKMQH 652 >gi|118579705|ref|YP_900955.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Pelobacter propionicus DSM 2379] gi|118502415|gb|ABK98897.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pelobacter propionicus DSM 2379] Length = 264 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 26/89 (29%), Gaps = 13/89 (14%) Query: 36 YPFEKGSTSPRFRGEHAL-RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 P + +R L CI C C ICP AI+ G Sbjct: 165 VPSLEVPGDSPYREWKGLSIPPETDASLCIRCGTCVRICPTAAISSGVGMPTD------- 217 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 ++ CI C C CP A V Sbjct: 218 -----LVACIACCACVRECPTGARVMRDE 241 >gi|330823669|ref|YP_004386972.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Alicycliphilus denitrificans K601] gi|329309041|gb|AEB83456.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Alicycliphilus denitrificans K601] Length = 687 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 26/71 (36%), Gaps = 9/71 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++RC C C + CPA A+ R C+ CGLC+ CP AI Sbjct: 554 DKDRCTLCMSCVSACPASALQDNPQAPQLRFIERN---------CVQCGLCERTCPEGAI 604 Query: 119 VEGPNFEFATE 129 P E Sbjct: 605 ALQPRLLLTPE 615 Score = 40.5 bits (93), Expect = 0.079, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 9/55 (16%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C IC A+AI + + + ++ C+ CG C CP A+ Sbjct: 306 VGCSACVDICSAEAIASDPARQ---------QVVVNPHLCVGCGACTTVCPTGAM 351 Score = 37.8 bits (86), Expect = 0.50, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 13/30 (43%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 ID+ C C C ACP AI + A Sbjct: 180 IDLDLCTRCNACVAACPEGAIGLDYQIDMA 209 Score = 37.8 bits (86), Expect = 0.51, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 32/88 (36%), Gaps = 16/88 (18%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 L P + C C C A CP AI ++ Y IDM C C Sbjct: 173 QWLADNPIDLDLCTRCNACVAACPEGAIGLD--------------YQIDMAACTGHRDCV 218 Query: 111 EACPVD-AIVEGPNFEFATETRQELYYD 137 +AC V AI E +++ +L D Sbjct: 219 KACAVAGAIRFDREAEPQSQSF-DLVLD 245 >gi|325578317|ref|ZP_08148452.1| electron transport complex protein RnfC [Haemophilus parainfluenzae ATCC 33392] gi|325160053|gb|EGC72182.1| electron transport complex protein RnfC [Haemophilus parainfluenzae ATCC 33392] Length = 778 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 1/58 (1%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 P E+ CI C C CP + + + + CI CG+C CP Sbjct: 372 PEPEQSCIRCSACSDACPVN-LMPQQLYWYARSEDHQKSEEYCLKDCIECGVCAYVCP 428 >gi|325261916|ref|ZP_08128654.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium sp. D5] gi|324033370|gb|EGB94647.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium sp. D5] Length = 1180 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 23/81 (28%), Gaps = 15/81 (18%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA------------QAITIESGPRCHDGTRRTVR 95 RG E CI C C +CP A E ++ Sbjct: 680 RGIAVDIPMWK-PENCIQCNRCAYVCPHAVIRPVALTEEEMAKAPEGLKTIDMVGMPGMK 738 Query: 96 YDIDMI--KCIYCGLCQEACP 114 + I + C CG C CP Sbjct: 739 FTITVSAYDCTGCGSCANVCP 759 >gi|323484983|ref|ZP_08090337.1| hypothetical protein HMPREF9474_02088 [Clostridium symbiosum WAL-14163] gi|323692817|ref|ZP_08107044.1| iron-sulfur cluster-binding protein [Clostridium symbiosum WAL-14673] gi|323401725|gb|EGA94069.1| hypothetical protein HMPREF9474_02088 [Clostridium symbiosum WAL-14163] gi|323503131|gb|EGB18966.1| iron-sulfur cluster-binding protein [Clostridium symbiosum WAL-14673] Length = 305 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 15/72 (20%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L + + +C++C C C V + +CI CG+C A Sbjct: 233 LFQMKVDKSKCVSCGKCARACKMD---------------VDVTKTPNHTECIRCGMCVRA 277 Query: 113 CPVDAIVEGPNF 124 CP +A+ F Sbjct: 278 CPTNAVCFRYGF 289 >gi|307353350|ref|YP_003894401.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307156583|gb|ADN35963.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanoplanus petrolearius DSM 11571] Length = 201 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 34/117 (29%), Gaps = 13/117 (11%) Query: 24 LRYFFKAKTTINYPFEKGST---SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80 L+ F + + + F K FRG L E C + Sbjct: 9 LKEFCRPEWWRKFLFAKTPPLVTPAHFRGYPELTGNE---------CSHELRCMMICPSP 59 Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 + + I CI CGLC EACP + + G E + + Sbjct: 60 GAIEVLKGDDGKWA-PVIYKGHCIRCGLCVEACPDNVLKSGDILERNEDDKTYFLAT 115 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 4/59 (6%) Query: 62 RCIACKLCEAICPAQAITI----ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 CI C LC CP + E T +D KC+ CG C ACPV+ Sbjct: 80 HCIRCGLCVEACPDNVLKSGDILERNEDDKTYFLATYHLHVDNAKCMRCGNCAVACPVN 138 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 21/72 (29%), Gaps = 8/72 (11%) Query: 55 RYPNGEERCIACKLCEAICPA--------QAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 +C+ C C CP + S + + KC C Sbjct: 117 HLHVDNAKCMRCGNCAVACPVNKEEDPRLGSTGTSSNDDVIMRVKEGNLTFLHPEKCTGC 176 Query: 107 GLCQEACPVDAI 118 C+E CP AI Sbjct: 177 KTCEETCPNGAI 188 >gi|266619158|ref|ZP_06112093.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Clostridium hathewayi DSM 13479] gi|288869304|gb|EFD01603.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Clostridium hathewayi DSM 13479] Length = 425 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 6/65 (9%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERC+ C C +CP A+++E G C+ CG+C C V AI Sbjct: 293 ERCVGCGKCAKVCPVLAVSMEEGENGKKKAVVNK------EICLGCGVCARNCAVKAIEL 346 Query: 121 GPNFE 125 E Sbjct: 347 QRRPE 351 Score = 40.5 bits (93), Expect = 0.075, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 22/43 (51%), Gaps = 4/43 (9%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139 +I + +C+ CG C + CPV A+ E +++ +KE Sbjct: 289 EISLERCVGCGKCAKVCPVLAVSM----EEGENGKKKAVVNKE 327 >gi|288931037|ref|YP_003435097.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus placidus DSM 10642] gi|288893285|gb|ADC64822.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus placidus DSM 10642] Length = 354 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 34/88 (38%), Gaps = 11/88 (12%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + + F + Y E CI C+ C CP A+ IE G Sbjct: 91 CPRDAITVRKIFDKDKIRHGYIRISEGCIECRNCVMFCPVDAVRIERGSPA--------- 141 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPN 123 I+ KCIYC +C+ CP + I + Sbjct: 142 --INEDKCIYCEICEYVCPKNVIEIHCD 167 Score = 41.6 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 2/65 (3%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C+ C +C C A+ I++ + +I C+YCG+CQ CP DAI Sbjct: 41 DTCVNCGICAVYCQYGALNIDAPFTRLLEKVHYSKVNI--EGCVYCGVCQANCPRDAITV 98 Query: 121 GPNFE 125 F+ Sbjct: 99 RKIFD 103 Score = 41.2 bits (95), Expect = 0.048, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 10/83 (12%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 +E P R + CI+C +CE++C D R D Sbjct: 277 YEDIHLPPERRYYKEKEHIVRISDACISCGICESLC----------KVASDNAFSINRGD 326 Query: 98 IDMIKCIYCGLCQEACPVDAIVE 120 I C CG+CQ CP++AI Sbjct: 327 IKPENCTSCGVCQANCPMEAITI 349 Score = 38.5 bits (88), Expect = 0.32, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 28/66 (42%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E++CI C++CE +CP I I C CG+C+E C +AI Sbjct: 143 NEDKCIYCEICEYVCPKNVIEIHCDSCKMQRDYAITGEIKISEACSTCGICREVCSFEAI 202 Query: 119 VEGPNF 124 E F Sbjct: 203 RENKLF 208 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 31/76 (40%), Gaps = 3/76 (3%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 P R + E C+ C +C+A CP AIT+ + D + Y CI Sbjct: 63 PFTRLLEKVHYSKVNIEGCVYCGVCQANCPRDAITV---RKIFDKDKIRHGYIRISEGCI 119 Query: 105 YCGLCQEACPVDAIVE 120 C C CPVDA+ Sbjct: 120 ECRNCVMFCPVDAVRI 135 >gi|294866647|ref|XP_002764792.1| pyruvate-flavodoxin oxidoreductase, putative [Perkinsus marinus ATCC 50983] gi|294941089|ref|XP_002783007.1| pyruvate-flavodoxin oxidoreductase, putative [Perkinsus marinus ATCC 50983] gi|239864539|gb|EEQ97509.1| pyruvate-flavodoxin oxidoreductase, putative [Perkinsus marinus ATCC 50983] gi|239895189|gb|EER14803.1| pyruvate-flavodoxin oxidoreductase, putative [Perkinsus marinus ATCC 50983] Length = 1850 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 40/111 (36%), Gaps = 19/111 (17%) Query: 59 GEERCIACKLCEAICPAQA-----------------ITIESGPRCHDGTRRTVRYDID-- 99 ++C C C AICP T + P + + I Sbjct: 767 DMDKCTQCNKCSAICPHGVIRPFLASPQELANATTPHTFLTKPATGGNQVSGLAFRIQAS 826 Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWES 150 + C C +C ACP +A++ P + E + + L + GDR++S Sbjct: 827 PLDCTGCEVCVNACPDNALMMKPLPDALAEGHKNNWDYAMTLESRGDRFDS 877 >gi|229828888|ref|ZP_04454957.1| hypothetical protein GCWU000342_00973 [Shuttleworthia satelles DSM 14600] gi|229792051|gb|EEP28165.1| hypothetical protein GCWU000342_00973 [Shuttleworthia satelles DSM 14600] Length = 1176 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 36/123 (29%), Gaps = 20/123 (16%) Query: 58 NGEERCIACKLCEAICPAQAITIES-------------GPRCHDGTRRTVRYDIDMIKCI 104 + CI C C +CP AI + + T + C Sbjct: 688 WNSDNCIGCGFCSYVCPHAAIRTIALTDDEVANAPEGFAAKDLRPTDYKYAVVVSAYDCT 747 Query: 105 YCGLCQEACPVD----AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDS 160 CG C CP A+ E E + Y+D L D + N V S Sbjct: 748 GCGSCANVCPGMKGNKALTMQNFEENEGEQK---YFDYAVELPVKDDVVEKFKPNTVKGS 804 Query: 161 PYR 163 Y+ Sbjct: 805 QYK 807 >gi|226952541|ref|ZP_03823005.1| electron transport complex, RnfABCDGE type, B subunit [Acinetobacter sp. ATCC 27244] gi|226836723|gb|EEH69106.1| electron transport complex, RnfABCDGE type, B subunit [Acinetobacter sp. ATCC 27244] Length = 267 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 27/75 (36%), Gaps = 10/75 (13%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G + E+ CI C C + CP AI + + I C C L Sbjct: 82 GRPQRMKAIIREDECIGCTKCISACPVDAIIGSGK----------LMHSILTDLCTGCEL 131 Query: 109 CQEACPVDAIVEGPN 123 C CPVD I P+ Sbjct: 132 CIPPCPVDCIDLIPD 146 Score = 37.4 bits (85), Expect = 0.76, Method: Composition-based stats. Identities = 14/35 (40%), Positives = 18/35 (51%) Query: 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 DG + ++ I +CI C C ACPVDAI Sbjct: 77 EIQADGRPQRMKAIIREDECIGCTKCISACPVDAI 111 >gi|254283963|ref|ZP_04958931.1| iron-sulfur cluster-binding protein [gamma proteobacterium NOR51-B] gi|219680166|gb|EED36515.1| iron-sulfur cluster-binding protein [gamma proteobacterium NOR51-B] Length = 332 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 20/59 (33%), Gaps = 12/59 (20%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI-------YCGLCQEACP 114 C C+ CE CP AI E +D KCI CG C CP Sbjct: 254 CYGCRACENACPPDAIFQEKKTVRGTEKWY-----VDFDKCIPFFAESYGCGACIAVCP 307 >gi|254425541|ref|ZP_05039258.1| 2Fe-2S iron-sulfur cluster binding domain protein [Synechococcus sp. PCC 7335] gi|196187964|gb|EDX82929.1| 2Fe-2S iron-sulfur cluster binding domain protein [Synechococcus sp. PCC 7335] Length = 238 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 10/87 (11%) Query: 59 GEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLCQEACP 114 RC+ C C C A T + R + C CG C ACP Sbjct: 144 DHNRCVLCTRCIRACDELEGAHTWDMAGRGRTSHIISDLAQPWGTSDSCTACGKCVNACP 203 Query: 115 VDAIVEGPNFEFATETRQELYYDKERL 141 A+ T E+ +++++L Sbjct: 204 TGALFTR------GSTAAEMVHNRDQL 224 >gi|114566900|ref|YP_754054.1| pyruvate synthase subunit porD [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337835|gb|ABI68683.1| pyruvate ferredoxin oxidoreductase, delta subunit [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 102 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 10/62 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 EE C C LC CP AI ++ G R D D + C CG+C+ CP AI Sbjct: 44 HEEACKHCMLCIPFCPDSAIPVKDGKRL----------DFDYMHCKGCGICENVCPFPAI 93 Query: 119 VE 120 Sbjct: 94 TM 95 >gi|119355980|ref|YP_910624.1| putative glutamate synthase (NADPH) small subunit [Chlorobium phaeobacteroides DSM 266] gi|119353329|gb|ABL64200.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Chlorobium phaeobacteroides DSM 266] Length = 578 Score = 45.5 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 6/59 (10%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C CK C + CP +A+ D KC+ C +C CP I G Sbjct: 521 CFDCKQCVSFCPQEAVKRFRDNPPG------EVVYTDYSKCVGCHICSLVCPSGYIQMG 573 >gi|332799542|ref|YP_004461041.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Tepidanaerobacter sp. Re1] gi|332697277|gb|AEE91734.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Tepidanaerobacter sp. Re1] Length = 170 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 23/57 (40%), Positives = 25/57 (43%), Gaps = 8/57 (14%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 I C CE CP AIT+ G T +D KCI CG C ACP AI Sbjct: 44 IPCNPCEEACPYGAITV--------GKPITNLPTLDEDKCIGCGTCIAACPGLAIFL 92 >gi|323699739|ref|ZP_08111651.1| cobyrinic acid ac-diamide synthase [Desulfovibrio sp. ND132] gi|323459671|gb|EGB15536.1| cobyrinic acid ac-diamide synthase [Desulfovibrio desulfuricans ND132] Length = 292 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 11/62 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ERCI C C +C A+ + Y ++ + C C +C CP AI Sbjct: 64 DPERCIGCGQCAELCRFDAVREDGD-----------VYRVNSLACEGCKVCVALCPEKAI 112 Query: 119 VE 120 Sbjct: 113 DF 114 Score = 33.9 bits (76), Expect = 6.9, Method: Composition-based stats. Identities = 12/26 (46%), Positives = 15/26 (57%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPN 123 ID +CI CG C E C DA+ E + Sbjct: 63 IDPERCIGCGQCAELCRFDAVREDGD 88 >gi|315452560|ref|YP_004072830.1| iron-sulfur cluster-binding domain-containing protein [Helicobacter felis ATCC 49179] gi|315131612|emb|CBY82240.1| iron-sulfur cluster-binding domain protein [Helicobacter felis ATCC 49179] Length = 468 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 31/90 (34%), Gaps = 5/90 (5%) Query: 28 FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT---IESGP 84 F T P ++GS F + +Y C C C +CP QAI+ + Sbjct: 78 FDFDHTKYTPTQEGSLIEFFNYNKEICQYHQRRVEC--CGKCSEVCPTQAISKLDPQIAR 135 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 ID CI CG C CP Sbjct: 136 EKDLECEDNRHLVIDHQSCIDCGKCIAVCP 165 Score = 34.3 bits (77), Expect = 6.0, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 9/66 (13%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 GE + ++ C C C C A++++ G T+ ++ C CG Sbjct: 323 GEFIRYGHIEIKDNCTLCLSCVGACNTGALSVD-------GNAYTLLFN--PSLCTTCGY 373 Query: 109 CQEACP 114 C+ CP Sbjct: 374 CEATCP 379 >gi|313672863|ref|YP_004050974.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Calditerrivibrio nitroreducens DSM 19672] gi|312939619|gb|ADR18811.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Calditerrivibrio nitroreducens DSM 19672] Length = 1185 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 30/104 (28%), Gaps = 24/104 (23%) Query: 57 PNGEERCIACKLCEAICPAQAITIE----------------SGPRCHDGTRRTVRYDIDM 100 E CI C +C +CP I ++ + R + + + Sbjct: 691 EWDPEICIQCGICSFVCPHATIRMKIYEPDVLKNVPSTFKSADARGKEFAGMKCTIQVAV 750 Query: 101 IKCIYCGLCQEACPV--------DAIVEGPNFEFATETRQELYY 136 C CG C CP AI P + R+ + Sbjct: 751 EDCTGCGACVYNCPAKSKADPTRKAINMVPQVPLREKERENFNF 794 >gi|307354606|ref|YP_003895657.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307157839|gb|ADN37219.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanoplanus petrolearius DSM 11571] Length = 136 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 25/75 (33%), Gaps = 6/75 (8%) Query: 57 PNGEERCIACKLCEAICPAQA------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 C C C CP A + + + + D + C CG+C Sbjct: 6 HVNMNNCTGCNNCVVACPVDALELSTVDPVTTDKIYKVIGGKAIVLDANSELCAGCGICI 65 Query: 111 EACPVDAIVEGPNFE 125 EACP D I F+ Sbjct: 66 EACPYDVITLKGRFD 80 >gi|308069431|ref|YP_003871036.1| Iron-sulfur protein [Paenibacillus polymyxa E681] gi|305858710|gb|ADM70498.1| Iron-sulfur protein [Paenibacillus polymyxa E681] Length = 216 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 13/65 (20%) Query: 62 RCIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 +C C+ C CP QAI E G ID +CI C C ACP AI Sbjct: 91 QCRHCENAPCAHACPVQAIRQEDG-----------VVMIDEERCIGCTSCVLACPFGAIE 139 Query: 120 EGPNF 124 P + Sbjct: 140 VSPVY 144 Score = 35.1 bits (79), Expect = 3.6, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 27/84 (32%), Gaps = 11/84 (13%) Query: 59 GEERCIACKLCEAICPA--------QAITIESGPRCHDGTRRTVRYDID-MIKCIYCGL- 108 +CI CK CE C A A D+ ++C +C Sbjct: 39 DAGQCIGCKACELACFAVHSQPNGIGASVGTVSVPVVPKVYVVRTGDMYVPVQCRHCENA 98 Query: 109 -CQEACPVDAIVEGPNFEFATETR 131 C ACPV AI + E R Sbjct: 99 PCAHACPVQAIRQEDGVVMIDEER 122 >gi|317057597|ref|YP_004106064.1| hydrogenase, Fe-only [Ruminococcus albus 7] gi|315449866|gb|ADU23430.1| hydrogenase, Fe-only [Ruminococcus albus 7] Length = 580 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 37/86 (43%), Gaps = 9/86 (10%) Query: 59 GEERCIACKLCEAIC-PAQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115 +CI C C A C Q++++ R +D+ + C+ CG C +CPV Sbjct: 144 DNNKCIQCMRCVAACKNVQSVSVIGNIRRGFNVHVGSAFDMPLASTACVGCGQCIVSCPV 203 Query: 116 DAIVEGPNFEFATETR-QELYYDKER 140 A+ E ++E + + D E+ Sbjct: 204 GALT-----EKSSEKKVWDAIADPEK 224 >gi|295402305|ref|ZP_06812261.1| dihydroorotate dehydrogenase family protein [Geobacillus thermoglucosidasius C56-YS93] gi|294975698|gb|EFG51320.1| dihydroorotate dehydrogenase family protein [Geobacillus thermoglucosidasius C56-YS93] Length = 427 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 22/71 (30%), Gaps = 4/71 (5%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 H ++ CI C C C + +G C+ C LC Sbjct: 330 HYKVVARINKDVCINCNKCYISCEDASHQCIDRLTDENGKEYLKV---REEDCVGCNLCS 386 Query: 111 EACPVD-AIVE 120 CPVD AI Sbjct: 387 IVCPVDGAIDM 397 >gi|289191855|ref|YP_003457796.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus sp. FS406-22] gi|288938305|gb|ADC69060.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus sp. FS406-22] Length = 167 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%) Query: 63 CIACKLCEAICPAQAITIESGP--RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 CI C+ C +CP +AI + + + + I+ KCIYC C + CPV ++ Sbjct: 57 CIGCEGCANVCPTKAIEMIPIEPVKITENYVKDKIPKINPEKCIYCLYCHDFCPVFSVF 115 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 9/33 (27%), Positives = 12/33 (36%) Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + + + CI C C CP AI P Sbjct: 45 KVKIPKTVIEELCIGCEGCANVCPTKAIEMIPI 77 >gi|262381167|ref|ZP_06074305.1| ferredoxin [Bacteroides sp. 2_1_33B] gi|262296344|gb|EEY84274.1| ferredoxin [Bacteroides sp. 2_1_33B] Length = 310 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 29/97 (29%), Gaps = 16/97 (16%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P + + CI C C CP +AIT+ + Sbjct: 193 PKSRRIYVSCVNKDKGAAARKACANACIGCGKCAKECPFEAITVTNN-----------VA 241 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 ID KC C C CP AI E R+E Sbjct: 242 YIDYTKCRLCRKCVAVCPTGAI-----HELNFPPRKE 273 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 28/81 (34%), Gaps = 8/81 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCH--------DGTRRTVRYDIDMIKCIYCGLCQ 110 EE+C +C C CP I + + + CI CG C Sbjct: 167 DEEKCTSCGACVKACPKSIIELRKKGPKSRRIYVSCVNKDKGAAARKACANACIGCGKCA 226 Query: 111 EACPVDAIVEGPNFEFATETR 131 + CP +AI N + T+ Sbjct: 227 KECPFEAITVTNNVAYIDYTK 247 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 22/65 (33%), Gaps = 9/65 (13%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 N C+ C C AI I T ++D KC CG C +ACP Sbjct: 135 NCSFGCLGYGDCVNACAFDAIHINPA---------TGIAEVDEEKCTSCGACVKACPKSI 185 Query: 118 IVEGP 122 I Sbjct: 186 IELRK 190 >gi|148643396|ref|YP_001273909.1| heterodisulfide reductase, subunit A, HdrA [Methanobrevibacter smithii ATCC 35061] gi|148552413|gb|ABQ87541.1| heterodisulfide reductase, subunit A, HdrA [Methanobrevibacter smithii ATCC 35061] Length = 662 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 7/66 (10%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + C AC++C +CP AI+I +I+ C CG C ACP Sbjct: 585 CTDDVICGACEVCVELCPYGAISITGDDNAAHA-------EINAALCKGCGTCVGACPSG 637 Query: 117 AIVEGP 122 A+ + Sbjct: 638 AMDQQH 643 Score = 37.0 bits (84), Expect = 0.88, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 23/82 (28%), Gaps = 7/82 (8%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR-------CHDGTRRTVRYDI 98 F + EE C C C CP + + I Sbjct: 237 NFHVTVGKKARYVIEEDCTGCGSCVEACPIEIPNYYDEGVGMVKAAYIPFPQAVPLCATI 296 Query: 99 DMIKCIYCGLCQEACPVDAIVE 120 D CI C LC +AC AI Sbjct: 297 DKDYCIECMLCDQACERGAIDH 318 >gi|118467237|ref|YP_884190.1| NADPH-ferredoxin reductase fpra [Mycobacterium avium 104] gi|118168524|gb|ABK69421.1| NADPH-ferredoxin reductase fpra [Mycobacterium avium 104] Length = 511 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 2/33 (6%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 ID C+ CG C E CPVDAI E E Sbjct: 14 IDPQACVDCGACVEVCPVDAIR--HEDELTDEQ 44 >gi|145589292|ref|YP_001155889.1| formate dehydrogenase, alpha subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047698|gb|ABP34325.1| NAD-dependent formate dehydrogenase catalytic subunit / NAD-dependent formate dehydrogenase iron-sulfur protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 963 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 5/65 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114 + CI C C C + + G + +D + C+ CG C +ACP Sbjct: 165 NLDACIQCNRCVRACREE-QVNDVIGYAMRGGHSEIVFDLNDPMGESTCVACGECVQACP 223 Query: 115 VDAIV 119 A++ Sbjct: 224 TGALM 228 >gi|85860137|ref|YP_462339.1| ferridoxin [Syntrophus aciditrophicus SB] gi|85723228|gb|ABC78171.1| ferridoxin [Syntrophus aciditrophicus SB] Length = 137 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 9/60 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++C+ C C A CP A+ ++ R T++ D C CG+C ACP A+ Sbjct: 81 NTDKCVHCGACTAFCPTDALHMD---------RETMKVVFDPELCNGCGICVTACPARAM 131 Score = 35.5 bits (80), Expect = 2.5, Method: Composition-based stats. Identities = 9/32 (28%), Positives = 13/32 (40%) Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 KC++CG C CP DA+ + Sbjct: 83 DKCVHCGACTAFCPTDALHMDRETMKVVFDPE 114 >gi|317487472|ref|ZP_07946258.1| indolepyruvate ferredoxin oxidoreductase [Bilophila wadsworthia 3_1_6] gi|316921261|gb|EFV42561.1| indolepyruvate ferredoxin oxidoreductase [Bilophila wadsworthia 3_1_6] Length = 591 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++CIAC C + ++ H T + I+ + C+ CG+C + CPV AI Sbjct: 530 DADKCIACGKC---IQSGCPSVVLSDAVHPKTGKRKA-RIEPVTCVGCGVCSQICPVQAI 585 >gi|319794409|ref|YP_004156049.1| electron transport complex, rnfABCdge type, b subunit [Variovorax paradoxus EPS] gi|315596872|gb|ADU37938.1| electron transport complex, RnfABCDGE type, B subunit [Variovorax paradoxus EPS] Length = 211 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 26/79 (32%), Gaps = 10/79 (12%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 P+F E E CI C LC CP AI + + + Sbjct: 63 PLDPQFGTEGPRAMAVIDEAWCIGCTLCLDACPTDAIVGINK----------RMHTVVEA 112 Query: 102 KCIYCGLCQEACPVDAIVE 120 C C LC CPVD I Sbjct: 113 HCTGCELCIPVCPVDCISL 131 >gi|313245487|emb|CBY40205.1| unnamed protein product [Oikopleura dioica] Length = 627 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 26/83 (31%), Gaps = 1/83 (1%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 K R ++C K C C + G C + T I Sbjct: 5 KPKQRDDDVQMKQTRIAIVNLDKCKP-KKCRQECKKTCPVVRMGKLCIEVTATDKSAKIY 63 Query: 100 MIKCIYCGLCQEACPVDAIVEGP 122 CI CG+C + CP +AI Sbjct: 64 ETLCIGCGICVKKCPFEAIQIIN 86 >gi|298377596|ref|ZP_06987548.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides sp. 3_1_19] gi|298265615|gb|EFI07276.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides sp. 3_1_19] Length = 310 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 29/97 (29%), Gaps = 16/97 (16%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P + + CI C C CP +AIT+ + Sbjct: 193 PKSRRIYVSCVNKDKGAAARKACANACIGCGKCAKECPFEAITVTNN-----------VA 241 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 ID KC C C CP AI E R+E Sbjct: 242 YIDYTKCRLCRKCVAVCPTGAI-----HELNFPPRKE 273 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 28/81 (34%), Gaps = 8/81 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCH--------DGTRRTVRYDIDMIKCIYCGLCQ 110 EE+C +C C CP I + + + CI CG C Sbjct: 167 DEEKCTSCGACVKACPKNIIELRKKGPKSRRIYVSCVNKDKGAAARKACANACIGCGKCA 226 Query: 111 EACPVDAIVEGPNFEFATETR 131 + CP +AI N + T+ Sbjct: 227 KECPFEAITVTNNVAYIDYTK 247 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 9/65 (13%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 N C+ C C AI I T ++D KC CG C +ACP + Sbjct: 135 NCSFGCLGYGDCVNACAFDAIHINPA---------TGIAEVDEEKCTSCGACVKACPKNI 185 Query: 118 IVEGP 122 I Sbjct: 186 IELRK 190 >gi|294649835|ref|ZP_06727237.1| NADH:ubiquinone oxidoreductase, subunit RnfB [Acinetobacter haemolyticus ATCC 19194] gi|292824318|gb|EFF83119.1| NADH:ubiquinone oxidoreductase, subunit RnfB [Acinetobacter haemolyticus ATCC 19194] Length = 267 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 27/75 (36%), Gaps = 10/75 (13%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G + E+ CI C C + CP AI + + I C C L Sbjct: 82 GRPQRMKAIIREDECIGCTKCISACPVDAIIGSGK----------LMHSILTDLCTGCEL 131 Query: 109 CQEACPVDAIVEGPN 123 C CPVD I P+ Sbjct: 132 CIPPCPVDCIDLIPD 146 Score = 37.0 bits (84), Expect = 0.77, Method: Composition-based stats. Identities = 14/35 (40%), Positives = 18/35 (51%) Query: 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 DG + ++ I +CI C C ACPVDAI Sbjct: 77 EIQADGRPQRMKAIIREDECIGCTKCISACPVDAI 111 >gi|260892291|ref|YP_003238388.1| ferredoxin-dependent glutamate synthase [Ammonifex degensii KC4] gi|260864432|gb|ACX51538.1| ferredoxin-dependent glutamate synthase [Ammonifex degensii KC4] Length = 548 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 41/104 (39%), Gaps = 19/104 (18%) Query: 41 GSTSPRFRGEHALRRY-PNGEERCIACKLCEAICPAQAITI-------------ESGPRC 86 G+ +P G LR +++C C C A+CP +AI + ++ + Sbjct: 5 GTLTPSSLGLKDLRWLIYWDKDKCALCGRCTAVCPVKAIELGVHRQRVVFSPLLDAPAKE 64 Query: 87 HDGTRRTVRYDIDM-----IKCIYCGLCQEACPVDAIVEGPNFE 125 V Y I CI CG+C + CP AI+ N E Sbjct: 65 ASSGLYRVYYGIRQRTEPAHACIGCGMCAQVCPNGAILPYRNDE 108 >gi|254567736|ref|XP_002490978.1| Essential iron-sulfur protein required for ribosome biogenesis and translation initiation [Pichia pastoris GS115] gi|238030775|emb|CAY68698.1| Essential iron-sulfur protein required for ribosome biogenesis and translation initiation [Pichia pastoris GS115] gi|328352489|emb|CCA38888.1| Translation initiation factor RLI1 [Pichia pastoris CBS 7435] Length = 606 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 22/56 (39%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 K C C +++G C + + I CI CG+C + CP AI Sbjct: 19 KKCRQECRKSCPVVKTGKLCIEVEAYSKIAFISETLCIGCGICVKKCPFGAINIIN 74 >gi|291287299|ref|YP_003504115.1| Cobyrinic acid ac-diamide synthase [Denitrovibrio acetiphilus DSM 12809] gi|290884459|gb|ADD68159.1| Cobyrinic acid ac-diamide synthase [Denitrovibrio acetiphilus DSM 12809] Length = 292 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 9/60 (15%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E C C +C C A+ R ++ I+ C CGLC CP AI Sbjct: 66 EYCTGCGICYRHCRFDAVERVDMSR---------KFVINEFSCEGCGLCVRLCPAGAISF 116 >gi|223984301|ref|ZP_03634445.1| hypothetical protein HOLDEFILI_01739 [Holdemania filiformis DSM 12042] gi|223963734|gb|EEF68102.1| hypothetical protein HOLDEFILI_01739 [Holdemania filiformis DSM 12042] Length = 384 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 10/65 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+C +C +C+ IC A+ + + H ID +C+ CG C C DAI Sbjct: 208 NPEQCRSCGMCQKICAHSALNFDENHKMH----------IDHSRCVGCGRCIGMCNFDAI 257 Query: 119 VEGPN 123 + Sbjct: 258 EPMND 262 >gi|194335813|ref|YP_002017607.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Pelodictyon phaeoclathratiforme BU-1] gi|194308290|gb|ACF42990.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Pelodictyon phaeoclathratiforme BU-1] Length = 1178 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/98 (17%), Positives = 25/98 (25%), Gaps = 24/98 (24%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA--------------- 77 T FEK + + + CI C C +CP A Sbjct: 665 TGTSKFEKRNLADEIPVW--------ESDICIQCAKCAIVCPHAAIRAKVYDPKYLDNAP 716 Query: 78 -ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + + + I C C +C CP Sbjct: 717 RTFKSTEAKGANWEGMKYTIQIAPEDCTGCEICIHVCP 754 >gi|150007171|ref|YP_001301914.1| ferredoxin [Parabacteroides distasonis ATCC 8503] gi|255015215|ref|ZP_05287341.1| ferredoxin [Bacteroides sp. 2_1_7] gi|256840546|ref|ZP_05546054.1| ferredoxin [Parabacteroides sp. D13] gi|149935595|gb|ABR42292.1| electron transport complex protein RnfB [Parabacteroides distasonis ATCC 8503] gi|256737818|gb|EEU51144.1| ferredoxin [Parabacteroides sp. D13] Length = 310 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 29/97 (29%), Gaps = 16/97 (16%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P + + CI C C CP +AIT+ + Sbjct: 193 PKSRRIYVSCVNKDKGAAARKACANACIGCGKCAKECPFEAITVTNN-----------VA 241 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 ID KC C C CP AI E R+E Sbjct: 242 YIDYTKCRLCRKCVAVCPTGAI-----HELNFPPRKE 273 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 28/81 (34%), Gaps = 8/81 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCH--------DGTRRTVRYDIDMIKCIYCGLCQ 110 EE+C +C C CP I + + + CI CG C Sbjct: 167 DEEKCTSCGACVKACPKNIIELRKKGPKSRRIYVSCVNKDKGAAARKACANACIGCGKCA 226 Query: 111 EACPVDAIVEGPNFEFATETR 131 + CP +AI N + T+ Sbjct: 227 KECPFEAITVTNNVAYIDYTK 247 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 9/65 (13%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 N C+ C C AI I T ++D KC CG C +ACP + Sbjct: 135 NCSFGCLGYGDCVNACAFDAIHINPA---------TGIAEVDEEKCTSCGACVKACPKNI 185 Query: 118 IVEGP 122 I Sbjct: 186 IELRK 190 >gi|153808573|ref|ZP_01961241.1| hypothetical protein BACCAC_02869 [Bacteroides caccae ATCC 43185] gi|149128895|gb|EDM20112.1| hypothetical protein BACCAC_02869 [Bacteroides caccae ATCC 43185] Length = 343 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 22/64 (34%), Gaps = 12/64 (18%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + E C C LC CPA AIT KCI C C + C Sbjct: 267 TPWVKDESLCTHCGLCVVHCPAGAITKGDELNVD------------ETKCIKCCACVKVC 314 Query: 114 PVDA 117 P +A Sbjct: 315 PRNA 318 Score = 35.1 bits (79), Expect = 3.3, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 14/30 (46%) Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + D C +CGLC CP AI +G Sbjct: 267 TPWVKDESLCTHCGLCVVHCPAGAITKGDE 296 >gi|147676920|ref|YP_001211135.1| MinD family ATPase [Pelotomaculum thermopropionicum SI] gi|146273017|dbj|BAF58766.1| MinD superfamily P-loop ATPase [Pelotomaculum thermopropionicum SI] Length = 291 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 8/63 (12%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 +RC C +C +C AI R Y +D I C CG+C CP AI Sbjct: 64 PDRCSGCGMCFELCRFGAIIKNGSYRPA--------YAVDRISCEGCGVCSHFCPEKAIE 115 Query: 120 EGP 122 P Sbjct: 116 FSP 118 >gi|326386804|ref|ZP_08208424.1| formate dehydrogenase, alpha subunit [Novosphingobium nitrogenifigens DSM 19370] gi|326208723|gb|EGD59520.1| formate dehydrogenase, alpha subunit [Novosphingobium nitrogenifigens DSM 19370] Length = 947 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 28/81 (34%), Gaps = 4/81 (4%) Query: 55 RYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + +CI C C C A+TIE + D +C+ CG C Sbjct: 159 YFDFDPSKCIVCSRCVRACEEVQGTFALTIEGRGFGSKVSAGQRGDDFLGSECVSCGACV 218 Query: 111 EACPVDAIVEGPNFEFATETR 131 +ACP + E E R Sbjct: 219 QACPTATLNEKAVKEIGKPER 239 >gi|315925914|ref|ZP_07922119.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC 23263] gi|315620735|gb|EFV00711.1| conserved hypothetical protein [Pseudoramibacter alactolyticus ATCC 23263] Length = 222 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 11/68 (16%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 L E CI C+ C +CP I S P ID +C++CG C Sbjct: 142 PELISGFFVGEGCIGCRNCSVVCPQSCIDSSSIPAV-----------IDQNRCLHCGRCA 190 Query: 111 EACPVDAI 118 EACPV I Sbjct: 191 EACPVGVI 198 >gi|303249174|ref|ZP_07335413.1| Cobyrinic acid ac-diamide synthase [Desulfovibrio fructosovorans JJ] gi|302489447|gb|EFL49395.1| Cobyrinic acid ac-diamide synthase [Desulfovibrio fructosovorans JJ] Length = 296 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 19/60 (31%), Gaps = 11/60 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C C C IC AITI + C CG C CP AI Sbjct: 67 DVELCTRCGACREICQFAAITILGD-----------TPVVFDEMCHGCGACAAVCPFGAI 115 >gi|124027610|ref|YP_001012930.1| ketoisovalerate oxidoreductase subunit vorD [Hyperthermus butylicus DSM 5456] gi|123978304|gb|ABM80585.1| Ketoisovalerate oxidoreductase subunit vorD [Hyperthermus butylicus DSM 5456] Length = 71 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 19/57 (33%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 +C G R ID C CG+C + CPV AI EF Sbjct: 7 CYMCWLYCPEHVIEMAAGRGPRGQDIPVIDYEYCKGCGVCAQVCPVKAISMVSEEEF 63 >gi|77919429|ref|YP_357244.1| ferredoxin 2 [Pelobacter carbinolicus DSM 2380] gi|77545512|gb|ABA89074.1| ferredoxin 2 [Pelobacter carbinolicus DSM 2380] Length = 583 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 30/88 (34%), Gaps = 21/88 (23%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C CP +AI + G I KC+ CG C CP +A Sbjct: 16 TECQDCSKCVRYCPVKAIKVADGQA-----------RIVPEKCVACGTCVRVCPANA--- 61 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRW 148 R +L K LL++ + Sbjct: 62 -------KRVRDDLDPTKRMLLSSDRVY 82 >gi|78222965|ref|YP_384712.1| glutamate synthase (NADPH) GltB2 subunit [Geobacter metallireducens GS-15] gi|78194220|gb|ABB31987.1| glutamate synthase (NADPH) GltB2 subunit [Geobacter metallireducens GS-15] Length = 509 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 22/71 (30%), Gaps = 11/71 (15%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI CK+C C + E+ CI C C CP AI Sbjct: 22 CIRCKVCVRQCAYEVHAYEAKADALTEDN---------TLCIGCRRCSALCPTGAITIRS 72 Query: 123 NFEFATETRQE 133 N E R E Sbjct: 73 NEE--VFKRNE 81 >gi|294867467|ref|XP_002765113.1| pyruvate:ferredoxin oxidoreductase/NADPH-cytochrome P450, putative [Perkinsus marinus ATCC 50983] gi|239865035|gb|EEQ97830.1| pyruvate:ferredoxin oxidoreductase/NADPH-cytochrome P450, putative [Perkinsus marinus ATCC 50983] Length = 1829 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 30/104 (28%), Gaps = 27/104 (25%) Query: 51 HALRRYPNGEERCIACKLCEAICPA-------------QAITIESGPRCHDGTRR----T 93 AL ++C C C CP A R G Sbjct: 737 VALMIPMVDMDKCTQCNTCSMACPHAVIRPFLLSQAEDDAKPSTFETRKAKGGAEVAGLH 796 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVE----------GPNFEFA 127 R + + C C +C ACP DA+ N+E+A Sbjct: 797 YRIQLSPLDCTGCEVCVHACPDDALTMKSFIDFKDDQSQNWEYA 840 >gi|218885366|ref|YP_002434687.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756320|gb|ACL07219.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 147 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 9/61 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ C+ C +C AICP A+ ++ R + +C CGLC CPV A+ Sbjct: 88 DEDSCMHCGMCTAICPTSALAMDIEARVVVFDK---------DRCTACGLCTRVCPVGAM 138 Query: 119 V 119 Sbjct: 139 N 139 Score = 33.9 bits (76), Expect = 6.6, Method: Composition-based stats. Identities = 7/33 (21%), Positives = 12/33 (36%) Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 C++CG+C CP A+ + Sbjct: 89 EDSCMHCGMCTAICPTSALAMDIEARVVVFDKD 121 >gi|158634532|gb|ABW76118.1| Fe-hydrogenase 3 [Trimastix pyriformis] Length = 445 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 6/66 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV------RYDIDMIKCIYCGLCQEA 112 + C+ C C+ +CP AI + P + +ID KCI+CG CQ Sbjct: 149 DPDLCVRCGACQKVCPYHAIVKLAVPCEEACPVGAIAKGPSGHAEIDWEKCIHCGQCQLH 208 Query: 113 CPVDAI 118 CP ++ Sbjct: 209 CPFSSV 214 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 5/63 (7%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTV-----RYDIDMIKCIYCGLCQEACPV 115 E C C + P ++ + + ID C+ CG CQ+ CP Sbjct: 106 ESCRNCTPAAYFVTNACQGCVARPCMSTCPKKAISRVDGQAKIDPDLCVRCGACQKVCPY 165 Query: 116 DAI 118 AI Sbjct: 166 HAI 168 >gi|160934810|ref|ZP_02082196.1| hypothetical protein CLOLEP_03685 [Clostridium leptum DSM 753] gi|156866263|gb|EDO59635.1| hypothetical protein CLOLEP_03685 [Clostridium leptum DSM 753] Length = 206 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 28/84 (33%), Gaps = 13/84 (15%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 P E+ S F C C CE +CP I + S P Sbjct: 133 KTPIER--FSFTFGKMKVEAGGYFITTGCTGCGDCETVCPQSCIDLISVPAV-------- 182 Query: 95 RYDIDMIKCIYCGLCQEACPVDAI 118 I C++CG C E CP AI Sbjct: 183 ---IKQAHCLHCGNCYEICPAKAI 203 >gi|118580644|ref|YP_901894.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Pelobacter propionicus DSM 2379] gi|118503354|gb|ABK99836.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pelobacter propionicus DSM 2379] Length = 56 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 11/64 (17%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + + CI C C+ CP AI+ + G R ID CI CG C + CP Sbjct: 1 MAHSINDDCINCGACDDSCPVNAISEQDGKRV-----------IDADTCIDCGACVDTCP 49 Query: 115 VDAI 118 V+AI Sbjct: 50 VNAI 53 >gi|221065418|ref|ZP_03541523.1| formate dehydrogenase, alpha subunit [Comamonas testosteroni KF-1] gi|220710441|gb|EED65809.1| formate dehydrogenase, alpha subunit [Comamonas testosteroni KF-1] Length = 976 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 23/82 (28%), Gaps = 3/82 (3%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T SG C+ CG C + Sbjct: 164 YFSYDPSKCIVCNRCVRACEETQGTFALTISGRGFESRITAGQGDGFMASDCVSCGACVQ 223 Query: 112 ACPVDAIVEGPNFEFATETRQE 133 ACP + E E E Sbjct: 224 ACPTATLQEKTVVELGQSEHSE 245 >gi|114330660|ref|YP_746882.1| electron transport complex, RnfABCDGE type, B subunit [Nitrosomonas eutropha C91] gi|114307674|gb|ABI58917.1| electron transport complex, RnfABCDGE type, B subunit [Nitrosomonas eutropha C91] Length = 218 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 33/100 (33%), Gaps = 12/100 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E +CI C C CP AI + + + C C C CPVD I Sbjct: 83 DEAQCIGCTFCLRACPVDAIIGAAK----------CMHTVLTALCTGCERCIAPCPVDCI 132 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158 P E AT ++ D R + + RN Sbjct: 133 SMVPVSEPATPEIRQQIADSAR--ERYHLRQLRLARNRQE 170 Score = 33.9 bits (76), Expect = 7.5, Method: Composition-based stats. Identities = 13/30 (43%), Positives = 15/30 (50%) Query: 89 GTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + ID +CI C C ACPVDAI Sbjct: 73 HPKPPAVAVIDEAQCIGCTFCLRACPVDAI 102 >gi|325278931|ref|YP_004251473.1| hydrogenase, Fe-only [Odoribacter splanchnicus DSM 20712] gi|324310740|gb|ADY31293.1| hydrogenase, Fe-only [Odoribacter splanchnicus DSM 20712] Length = 587 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 3/67 (4%) Query: 59 GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115 +CI C+ CE +C Q + + +D + C +CG C CPV Sbjct: 149 DMSKCIYCRRCEMMCNEVQTVGALGAVNRGFISTIAPAFDEPLSNSACTFCGQCVAVCPV 208 Query: 116 DAIVEGP 122 A+ E Sbjct: 209 GALTEVD 215 >gi|319936762|ref|ZP_08011175.1| nitroreductase [Coprobacillus sp. 29_1] gi|319808319|gb|EFW04884.1| nitroreductase [Coprobacillus sp. 29_1] Length = 266 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 12/103 (11%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E+CI C++C CPA I + I +CI CG C CP +A+ Sbjct: 18 NKEKCIGCQMCIKDCPAHNIEFKDKKAA-----------IIDKECIMCGHCVAICPKNAV 66 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161 + + +++ + +L N R+ I + + P Sbjct: 67 IISGYTDHPIIREKDVNLNPNDIL-NTIRFRRTIRQFQKKNIP 108 >gi|291550300|emb|CBL26562.1| electron transport complex, RnfABCDGE type, B subunit [Ruminococcus torques L2-14] Length = 265 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 11/85 (12%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P+E+ + + + CI C+LCE C A AIT+ + Sbjct: 191 IPYEQKTFVRCNSNAKGKVQLTICQAGCIGCRLCEKNCEAGAITVTNFLAH--------- 241 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVE 120 ID KC CG+C E CP I Sbjct: 242 --IDADKCTECGVCVEKCPRKIITL 264 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGP-----RCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 +E C AC C A CP I + RC+ + V+ I CI C LC++ C Sbjct: 169 DKEACKACGKCIAACPKHLIELIPYEQKTFVRCNSNAKGKVQLTICQAGCIGCRLCEKNC 228 Query: 114 PVDAIVEGP 122 AI Sbjct: 229 EAGAITVTN 237 Score = 34.7 bits (78), Expect = 4.8, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 25/73 (34%), Gaps = 12/73 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C A CP AI + G +D C CG C ACP I Sbjct: 140 CNSGCLGFGSCVAACPFDAIHVVDGIAV-----------VDKEACKACGKCIAACPKHLI 188 Query: 119 VEGPNFEFATETR 131 P +E T R Sbjct: 189 ELIP-YEQKTFVR 200 >gi|289597112|ref|YP_003483808.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Aciduliprofundum boonei T469] gi|289534899|gb|ADD09246.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Aciduliprofundum boonei T469] Length = 105 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 28/82 (34%), Gaps = 7/82 (8%) Query: 49 GEHALRRYPNGEERCIACKLCEAIC-------PAQAITIESGPRCHDGTRRTVRYDIDMI 101 G + + ++CI C +C C T P + ++ ID Sbjct: 22 GTWRVFKPVINYDKCIRCLICWQFCPEPSILRYDDEETRMKTPAPKEALKKLPVVVIDYD 81 Query: 102 KCIYCGLCQEACPVDAIVEGPN 123 C CG+C CPV AI Sbjct: 82 YCKGCGICYNECPVKAIDFVKE 103 >gi|317053187|ref|YP_004118954.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Pantoea sp. At-9b] gi|255761156|gb|ACU32755.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Pantoea sp. At-9b] gi|316952926|gb|ADU72398.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Pantoea sp. At-9b] Length = 1169 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 26/93 (27%), Gaps = 16/93 (17%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTR----------- 91 + AL E C C C ICP A+ + R Sbjct: 673 WEKRGIALEVPVWQPEGCTQCNQCAFICPHAAVRPALLTTEERYFAMPELLSKPAQGATD 732 Query: 92 RTVRYDIDMIKCIYCGLCQEACPV--DAIVEGP 122 I + C CG C + CP A+ P Sbjct: 733 YEYHLAISPLDCSGCGNCVDICPAKGKALSMKP 765 >gi|212224628|ref|YP_002307864.1| 2-ketoisovalerate ferredoxin oxidoreductase subunit delta [Thermococcus onnurineus NA1] gi|212009585|gb|ACJ16967.1| 2-oxoisovalerate:ferredoxin oxidoreductase, delta subunit [Thermococcus onnurineus NA1] Length = 102 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 10/65 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + +C+ C +C CP AI I ID C CG+C CP AI Sbjct: 46 DDNKCVKCYICWKFCPEPAIYIREDGYVG----------IDYDYCKGCGICANECPTKAI 95 Query: 119 VEGPN 123 Sbjct: 96 TMEKE 100 >gi|270308711|ref|YP_003330769.1| reductive dehalogenase [Dehalococcoides sp. VS] gi|270154603|gb|ACZ62441.1| reductive dehalogenase [Dehalococcoides sp. VS] Length = 473 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 10/67 (14%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRT----VRYDIDMIKCIY------CGLC 109 C C C +CP+ + E P + + ID KCI C C Sbjct: 340 RRFCHNCGTCAKVCPSGCQSTEKDPYWETRDTYSNAGLQTWYIDWDKCIRWGGPWDCVNC 399 Query: 110 QEACPVD 116 Q +CP + Sbjct: 400 QTSCPFN 406 >gi|134298021|ref|YP_001111517.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfotomaculum reducens MI-1] gi|134050721|gb|ABO48692.1| tungsten-dependent benzoyl-CoA reductase-related protein bamE [Desulfotomaculum reducens MI-1] Length = 1010 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 6/63 (9%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + +C+AC +C +CPA+A T+ + R + DI+ C CG C +C Sbjct: 935 YVDKRKCMACGVCVEVCPAKAATLVTDERGN------TAADINPALCKGCGACSSSCRCG 988 Query: 117 AIV 119 AI Sbjct: 989 AIN 991 Score = 40.9 bits (94), Expect = 0.067, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 26/98 (26%), Gaps = 16/98 (16%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPA---QAITIESGPRCHDGTRRTVR----Y 96 F+ + +C C C CP A R Y Sbjct: 91 PGNFKVTIRTKARYIDVNKCTGCGSCAEACPVKVDDAFNQGLNKRKAIYKLYAQAFPNAY 150 Query: 97 DIDMIKCIY---------CGLCQEACPVDAIVEGPNFE 125 ID KC+ CG C +AC AI E Sbjct: 151 AIDSSKCLKFKNLSNDKLCGKCIKACQAGAINHHMQDE 188 Score = 40.9 bits (94), Expect = 0.068, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 30/86 (34%), Gaps = 9/86 (10%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCI------ACKLC---EAICPAQAITIESGPRCHDG 89 E+ N CI C ++ ++ + +E P Sbjct: 37 EREPAIGGTMPMLDKTFPTNDCSMCILSPKLVDCGRHLNVNSMTNSEVVGLEGEPGNFKV 96 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPV 115 T RT ID+ KC CG C EACPV Sbjct: 97 TIRTKARYIDVNKCTGCGSCAEACPV 122 >gi|13366094|dbj|BAB39384.1| hydrogenase diaphorase small subunit [Anabaena variabilis] Length = 238 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 24/70 (34%), Gaps = 4/70 (5%) Query: 54 RRYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLC 109 R+ RC+ C C +C A T + R + T C CG C Sbjct: 139 HRFGIDHNRCVLCTRCVRVCDEIEGAHTWDMAGRGTNSHVITDLNQPWGTSDTCTSCGKC 198 Query: 110 QEACPVDAIV 119 ACP AI Sbjct: 199 VNACPTGAIF 208 >gi|88811011|ref|ZP_01126267.1| electron transport complex protein RnfB [Nitrococcus mobilis Nb-231] gi|88791550|gb|EAR22661.1| electron transport complex protein RnfB [Nitrococcus mobilis Nb-231] Length = 277 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 10/64 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C C CP AI + + + +C C LC CPVD Sbjct: 112 WIDETACIGCTRCIQACPVDAILGTAKQ----------MHTVIRTECTGCALCIAPCPVD 161 Query: 117 AIVE 120 I Sbjct: 162 CIHL 165 Score = 37.4 bits (85), Expect = 0.69, Method: Composition-based stats. Identities = 14/39 (35%), Positives = 18/39 (46%) Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 P+ + ID CI C C +ACPVDAI+ Sbjct: 98 NPKHGTLPQEPTVAWIDETACIGCTRCIQACPVDAILGT 136 >gi|307266903|ref|ZP_07548422.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermoanaerobacter wiegelii Rt8.B1] gi|326389885|ref|ZP_08211449.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Thermoanaerobacter ethanolicus JW 200] gi|306918060|gb|EFN48315.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermoanaerobacter wiegelii Rt8.B1] gi|325994153|gb|EGD52581.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Thermoanaerobacter ethanolicus JW 200] Length = 56 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 26/64 (40%), Gaps = 11/64 (17%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + CI+C C A CP AI G Y+ID CI CG C+ CP Sbjct: 1 MAHYITDECISCGACAAECPVDAIHEGDGK-----------YEIDPDTCIDCGACEAVCP 49 Query: 115 VDAI 118 AI Sbjct: 50 TGAI 53 >gi|302831936|ref|XP_002947533.1| pyruvate-ferredoxin oxidoreductase [Volvox carteri f. nagariensis] gi|300267397|gb|EFJ51581.1| pyruvate-ferredoxin oxidoreductase [Volvox carteri f. nagariensis] Length = 1721 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 22/113 (19%), Positives = 34/113 (30%), Gaps = 18/113 (15%) Query: 29 KAKTTINYPF--EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA----------- 75 K ++ P T+ + A + E C C +C +CP Sbjct: 1183 KLPVSVFSPEGFVPPGTTVIEKRAIAAQVPVWKAENCTQCNICAFVCPHAAIRPALAQPG 1242 Query: 76 ---QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLCQEACPVDAIVEGPN 123 A + ++Y I C C LC ACP +A+ P Sbjct: 1243 ELQNAPASFGSIAAKGPGLQGLKYRIQVSPYDCTGCDLCTHACPDNALEAKPI 1295 >gi|299138535|ref|ZP_07031714.1| NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding [Acidobacterium sp. MP5ACTX8] gi|298599781|gb|EFI55940.1| NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding [Acidobacterium sp. MP5ACTX8] Length = 791 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 29/87 (33%), Gaps = 9/87 (10%) Query: 44 SPRFRGEHALRRYPN-GEERCIACKLCEAICPAQAITIESGPR--------CHDGTRRTV 94 R E RCI C C +C G + + + Sbjct: 128 PKNHREEQKWSPVVYFDRPRCILCYRCVRMCGEGMDVFALGIQNRGSSSVIAPNVPAQLS 187 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEG 121 D+ + C CG+C +ACPV A+ G Sbjct: 188 PEDLPNLDCEQCGMCIDACPVGALTSG 214 >gi|293402452|ref|ZP_06646588.1| sulfite reductase, subunit C [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304115|gb|EFE45368.1| sulfite reductase, subunit C [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 334 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 8/74 (10%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G L + + CI C C C + A + S R + D C+ CG Sbjct: 164 GIVGLTKPIYDPDLCIGCGSCVKACESHATRVLS--------MVNNRIEKDACCCVGCGE 215 Query: 109 CQEACPVDAIVEGP 122 C CP +A+ P Sbjct: 216 CTLVCPTNAMRRSP 229 >gi|255527636|ref|ZP_05394497.1| sulfite reductase, subunit C [Clostridium carboxidivorans P7] gi|296185314|ref|ZP_06853724.1| sulfite reductase, subunit C [Clostridium carboxidivorans P7] gi|255508678|gb|EET85057.1| sulfite reductase, subunit C [Clostridium carboxidivorans P7] gi|296050148|gb|EFG89572.1| sulfite reductase, subunit C [Clostridium carboxidivorans P7] Length = 317 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 21/75 (28%), Gaps = 8/75 (10%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G + RCI C+ C C + + D KCI CG Sbjct: 160 GIIGMTEPQYDRYRCIGCQACVKNC--------KKRSTGALSFENFKVVRDHDKCIGCGE 211 Query: 109 CQEACPVDAIVEGPN 123 C CP A Sbjct: 212 CVGKCPTGAWTRSDE 226 >gi|170290379|ref|YP_001737195.1| heterodisulfide reductase, subunit A [Candidatus Korarchaeum cryptofilum OPF8] gi|170174459|gb|ACB07512.1| Heterodisulfide reductase, subunit A [Candidatus Korarchaeum cryptofilum OPF8] Length = 648 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 32/96 (33%), Gaps = 15/96 (15%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE-------SGPRCHDGTRRTVRYDI 98 FR R +++C+AC +C CP + + Y I Sbjct: 226 DFRVRVKKRARYVDQDKCVACGICAESCPVEVLNEWYARLGKRKAAYIPFPQSVPRAYVI 285 Query: 99 DMIKCIY-----CGLCQEACPVDAIVEGP---NFEF 126 D C++ C C+E CP AI FE Sbjct: 286 DRENCLFFRDGSCRKCEEVCPAKAIDLSESDGEFEL 321 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 11/60 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C C C CP AI +E G + + C+ CG+CQ ACP AI Sbjct: 578 NSELCTGCGACVEECPFSAIVLEEGKA-----------KVLPLACMGCGICQGACPTGAI 626 >gi|297619404|ref|YP_003707509.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanococcus voltae A3] gi|297378381|gb|ADI36536.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus voltae A3] Length = 351 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 31/61 (50%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 N ++C+ C +C CPA AI + + +D C+YC +C++ACP DA Sbjct: 148 NFNDKCVLCGICAEYCPADAIQLIPNDLNSKSLKPYKEIVVDTDACVYCKVCEKACPHDA 207 Query: 118 I 118 I Sbjct: 208 I 208 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 1/76 (1%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R R + C+ C +C ICP +AI + G + DI KC+ CG Sbjct: 17 REGVESRILKWEDCVCVGCGICSEICPTKAIEMGPLGAIFRGDIEADKVDIS-EKCVLCG 75 Query: 108 LCQEACPVDAIVEGPN 123 +C ACP DA+ N Sbjct: 76 MCACACPFDAMNLSIN 91 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 30/75 (40%), Gaps = 8/75 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESG--------PRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + C+ CK+CE CP AI P+ + +ID C+ CG C Sbjct: 189 DTDACVYCKVCEKACPHDAIEAICYKCPLASRIPKPELYKEIKGQTNIDKELCVTCGWCA 248 Query: 111 EACPVDAIVEGPNFE 125 CP +AI FE Sbjct: 249 NICPAEAIEVQKPFE 263 Score = 42.8 bits (99), Expect = 0.018, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 5/84 (5%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT----IESGPRCHDGTRRTV 94 E G FRG+ + E+C+ C +C CP A+ +S + Sbjct: 48 EMGPLGAIFRGDIE-ADKVDISEKCVLCGMCACACPFDAMNLSINGKSIKEMEQYPKIKR 106 Query: 95 RYDIDMIKCIYCGLCQEACPVDAI 118 ++ KC+ C C+ CP AI Sbjct: 107 DITLNQDKCVLCEQCEIVCPQCAI 130 Score = 42.0 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 2/65 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +++C+ C+ CE +CP AI E + + KC+ CG+C E CP DAI Sbjct: 111 NQDKCVLCEQCEIVCPQCAI--EVERELPERKTLVLGEINFNDKCVLCGICAEYCPADAI 168 Query: 119 VEGPN 123 PN Sbjct: 169 QLIPN 173 Score = 41.6 bits (96), Expect = 0.040, Method: Composition-based stats. Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 8/83 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P E F GE + E+ C AC C ++CP A+ P+ T R Sbjct: 251 CPAEAIEVQKPFEGELIV-----NEKACNACGACVSVCPCNALVF---PKSKVQGEITPR 302 Query: 96 YDIDMIKCIYCGLCQEACPVDAI 118 +++ C+ CG C ACPV A+ Sbjct: 303 VEVNQDVCVLCGACTHACPVSAL 325 Score = 37.4 bits (85), Expect = 0.74, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 8/78 (10%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 + + +E C+ C C ICPA+AI ++ ++ Sbjct: 221 IPKPELYKEIKGQTNIDKELCVTCGWCANICPAEAIEVQKPFEGEL--------IVNEKA 272 Query: 103 CIYCGLCQEACPVDAIVE 120 C CG C CP +A+V Sbjct: 273 CNACGACVSVCPCNALVF 290 >gi|134094633|ref|YP_001099708.1| putative iron-sulfur binding protein [Herminiimonas arsenicoxydans] gi|133738536|emb|CAL61581.1| putative ferredoxin [Herminiimonas arsenicoxydans] Length = 699 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 9/79 (11%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C C CP A+T + + C+ CGLC++ CP +AI Sbjct: 566 NRDACTLCMSCVGACPESALTDNANAPQLRFIEKN---------CVQCGLCEKTCPENAI 616 Query: 119 VEGPNFEFATETRQELYYD 137 P ++ + Sbjct: 617 TLVPRLLLTPAAKELQVLN 635 Score = 41.2 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 12/36 (33%), Positives = 14/36 (38%) Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 R ID+ CI C C E CP AI + Sbjct: 189 RWQQDNPIDLESCIRCNACIEVCPESAIDLTYQIDL 224 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 17/90 (18%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 I C C IC A+AI+ ++ C CG C CP A+ Sbjct: 326 IGCNACIEICSAEAISHNGN-----------HVKVNPNLCAGCGACTTVCPSGAMA---- 370 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIV 153 +A +++ + LLN + Sbjct: 371 --YAYPRTEDMGLRVKTLLNTYAKAGGRQA 398 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 14/60 (23%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + P E CI C C +CP AI + Y ID+ KC G C +AC Sbjct: 192 QDNPIDLESCIRCNACIEVCPESAID--------------LTYQIDLDKCRSHGDCVKAC 237 >gi|147920864|ref|YP_685329.1| heterodisulfide reductase, subunit A [uncultured methanogenic archaeon RC-I] gi|110620725|emb|CAJ36003.1| heterodisulfide reductase, subunit A [uncultured methanogenic archaeon RC-I] Length = 658 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 6/64 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C +C +CP +AIT+ + +++ C CG C ACP AI Sbjct: 581 DDALCSGCGVCVGLCPYKAITMVDIEDGK------RKANLNDAMCKGCGTCGGACPAKAI 634 Query: 119 VEGP 122 Sbjct: 635 RMQH 638 Score = 33.9 bits (76), Expect = 6.6, Method: Composition-based stats. Identities = 8/21 (38%), Positives = 9/21 (42%) Query: 103 CIYCGLCQEACPVDAIVEGPN 123 C CG+C CP AI Sbjct: 585 CSGCGVCVGLCPYKAITMVDI 605 >gi|62181094|ref|YP_217511.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|62128727|gb|AAX66430.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|322715581|gb|EFZ07152.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] Length = 287 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 25/78 (32%), Gaps = 12/78 (15%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C C C CP I + I +C CG C CP A+ Sbjct: 190 PQECRMCGACWRSCPENVIQFDDD-----------TLTIAAARCTGCGGCAAVCPHQALR 238 Query: 120 EGPNFEFATETRQELYYD 137 + E A+ TR + Sbjct: 239 LRFDVEPAS-TRHSAVHT 255 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 11/50 (22%) Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C +CPAQA ++ G ID +CI CG C CPVDAI Sbjct: 29 CADVCPAQAFSLAQGQVS-----------IDTTRCIACGDCLFVCPVDAI 67 >gi|33151623|ref|NP_872976.1| electron transport complex protein RnfC [Haemophilus ducreyi 35000HP] gi|71153698|sp|Q7VNT4|RNFC_HAEDU RecName: Full=Electron transport complex protein rnfC gi|33147844|gb|AAP95365.1| putative iron-sulfur binding NADH dehydrogenase [Haemophilus ducreyi 35000HP] Length = 702 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 34/107 (31%), Gaps = 3/107 (2%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E CI C C CP + + + + CI CG+C CP Sbjct: 379 PEPERNCIRCSNCSDACPVS-LLPQQLYWFARAEDHQKSMEYHLDACIECGVCAYVCP-S 436 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 I F E+ ++ R+E+ R + + R Sbjct: 437 YIPLIQYFRQEKAKINEVEQKAKKAEEAKLRFEAREAR-LQKEKEAR 482 >gi|116753878|ref|YP_842996.1| cobyrinic acid a,c-diamide synthase [Methanosaeta thermophila PT] gi|116665329|gb|ABK14356.1| Cobyrinic acid a,c-diamide synthase [Methanosaeta thermophila PT] Length = 277 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 26/80 (32%), Gaps = 11/80 (13%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100 R E + E+ C+ C C +C AI + R + Sbjct: 45 PEMKLLDRKECTVPVPQIDEKLCVHCGRCAEVCAFNAIAVIP-----------TRAVVFP 93 Query: 101 IKCIYCGLCQEACPVDAIVE 120 C CG C +CP AI E Sbjct: 94 ELCHGCGACMISCPEKAISE 113 Score = 34.3 bits (77), Expect = 5.2, Method: Composition-based stats. Identities = 11/28 (39%), Positives = 14/28 (50%) Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGP 122 ID C++CG C E C +AI P Sbjct: 59 VPQIDEKLCVHCGRCAEVCAFNAIAVIP 86 >gi|118580371|ref|YP_901621.1| cobyrinic acid a,c-diamide synthase [Pelobacter propionicus DSM 2379] gi|118503081|gb|ABK99563.1| Cobyrinic acid a,c-diamide synthase [Pelobacter propionicus DSM 2379] Length = 285 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 18/62 (29%), Gaps = 11/62 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C C C C AI + I C CG C CP AI Sbjct: 63 DEALCDGCGECGRFCQYHAIVSFG-----------TKPVIFPEMCHGCGGCMAVCPRRAI 111 Query: 119 VE 120 E Sbjct: 112 SE 113 >gi|308160391|gb|EFO62883.1| Nitroreductase family protein fused to ferredoxin domain Fd-NR1 [Giardia lamblia P15] Length = 281 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 24/67 (35%), Gaps = 8/67 (11%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 R E+ CI C +C CP Q I + + R + CI CG C C Sbjct: 3 RFPEVDEDLCIGCNVCVQGCPIQCIEVNAETRKLVFRAKET--------CISCGHCASVC 54 Query: 114 PVDAIVE 120 AI Sbjct: 55 RTAAISM 61 >gi|326789304|ref|YP_004307125.1| nitroreductase [Clostridium lentocellum DSM 5427] gi|326540068|gb|ADZ81927.1| nitroreductase [Clostridium lentocellum DSM 5427] Length = 272 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 33/107 (30%), Gaps = 14/107 (13%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 E+C C LC C A+ I++ G C CG C CP Sbjct: 1 MITINTEKCTGCSLCIKDCFARDISLVDGKAVASNKT-----------CFKCGHCIAICP 49 Query: 115 VDAIVEG--PNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 A+ E + + + LL N ++ I + D Sbjct: 50 QKAVSTTEYNMNEVKDYDAESFNINADHLL-NFIKFRRTIRQFKKQD 95 >gi|283131411|dbj|BAI63412.1| putative pyruvate ferredoxin/flavodoxin oxidoreductase family protein [Streptococcus dysgalactiae subsp. equisimilis] Length = 1215 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 23/71 (32%), Gaps = 14/71 (19%) Query: 58 NGEERCIACKLCEAICPAQAITI------------ESGPRCHDGTRRTVRYDIDM--IKC 103 + C+ C C +CP AI E + Y I + C Sbjct: 700 WDKSHCVQCHRCSFVCPHAAIRPILIDDEELALAPEGYQVMDFKGKDGSYYRIQVSVEDC 759 Query: 104 IYCGLCQEACP 114 C LC EACP Sbjct: 760 TGCQLCVEACP 770 >gi|283131351|dbj|BAI63355.1| putative pyruvate ferredoxin/flavodoxin oxidoreductase family protein [Streptococcus dysgalactiae subsp. equisimilis] gi|323128106|gb|ADX25403.1| pyruvate ferredoxin/flavodoxin oxidoreductase family protein [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 1202 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 23/71 (32%), Gaps = 14/71 (19%) Query: 58 NGEERCIACKLCEAICPAQAITI------------ESGPRCHDGTRRTVRYDIDM--IKC 103 + C+ C C +CP AI E + Y I + C Sbjct: 687 WDKSHCVQCHRCSFVCPHAAIRPILIDDEELALAPEGYQVMDFKGKDGSYYRIQVSVEDC 746 Query: 104 IYCGLCQEACP 114 C LC EACP Sbjct: 747 TGCQLCVEACP 757 >gi|283131308|dbj|BAI63313.1| putative pyruvate ferredoxin/flavodoxin oxidoreductase family protein [Streptococcus dysgalactiae subsp. equisimilis] Length = 1202 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 23/71 (32%), Gaps = 14/71 (19%) Query: 58 NGEERCIACKLCEAICPAQAITI------------ESGPRCHDGTRRTVRYDIDM--IKC 103 + C+ C C +CP AI E + Y I + C Sbjct: 687 WDKSHCVQCHRCSFVCPHAAIRPILIDDEELALAPEGYQVMDFKGKDGSYYRIQVSVEDC 746 Query: 104 IYCGLCQEACP 114 C LC EACP Sbjct: 747 TGCQLCVEACP 757 >gi|281356261|ref|ZP_06242754.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Victivallis vadensis ATCC BAA-548] gi|281317630|gb|EFB01651.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Victivallis vadensis ATCC BAA-548] Length = 491 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 13/64 (20%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E+C+ C C CP+ I + G ID +C+ C C ACPV AI Sbjct: 213 DKEQCVKCGKCVRSCPSGCIALAKGE-------------IDNERCVRCMNCFSACPVGAI 259 Query: 119 VEGP 122 G Sbjct: 260 HYGH 263 Score = 41.6 bits (96), Expect = 0.036, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 6/53 (11%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 C C CP A+ +E R + + CI CG C+ ACPV Sbjct: 403 TDCGACAEHCPTGALRMEPDSRGIRIPK------LTSELCIGCGSCEYACPVR 449 Score = 39.3 bits (90), Expect = 0.20, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 23/75 (30%), Gaps = 5/75 (6%) Query: 54 RRYPNGEERC-IACKLCEAICPAQAITIESGPRCHDGTRRTVRY----DIDMIKCIYCGL 108 C C C +CP AI + P Y + + CG Sbjct: 348 VHLKFDRGMCEFNCDNCGRVCPTGAIVPMALPDKRRCRIGLAEYIPPLCVAVADGTDCGA 407 Query: 109 CQEACPVDAIVEGPN 123 C E CP A+ P+ Sbjct: 408 CAEHCPTGALRMEPD 422 >gi|254451326|ref|ZP_05064763.1| NAD-dependent formate dehydrogenase alpha subunit [Octadecabacter antarcticus 238] gi|198265732|gb|EDY90002.1| NAD-dependent formate dehydrogenase alpha subunit [Octadecabacter antarcticus 238] Length = 984 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 5/61 (8%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACPVDAI 118 CI C LC C + + G +D + C+ CG C +ACP A+ Sbjct: 151 CIQCGLCVRACR-EVQVNDVIGMSGRGQDSYPTFDLADPMGDSTCVACGECVQACPTGAL 209 Query: 119 V 119 + Sbjct: 210 M 210 >gi|182625936|ref|ZP_02953701.1| [Fe] hydrogenase [Clostridium perfringens D str. JGS1721] gi|177908849|gb|EDT71347.1| [Fe] hydrogenase [Clostridium perfringens D str. JGS1721] Length = 696 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 9/68 (13%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 EE+CI C C+ IC ++ D CI CG C CP Sbjct: 21 CRDEEKCIKCGSCKNICTD---------YIGVNGHYSLEKTNDTAVCINCGQCANVCPTS 71 Query: 117 AIVEGPNF 124 +I E ++ Sbjct: 72 SITEVFDY 79 >gi|297619768|ref|YP_003707873.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanococcus voltae A3] gi|297378745|gb|ADI36900.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus voltae A3] Length = 169 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 2/61 (3%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPVDAI 118 + CI C C CP +AIT+E + + ID KC+YC C + CP+ A+ Sbjct: 52 DICIGCGGCANACPTKAITMEQIEPIKLTEDYSKEFIPVIDAEKCVYCLYCHDFCPIFAL 111 Query: 119 V 119 Sbjct: 112 F 112 Score = 37.0 bits (84), Expect = 0.85, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 10/21 (47%) Query: 103 CIYCGLCQEACPVDAIVEGPN 123 CI CG C ACP AI Sbjct: 54 CIGCGGCANACPTKAITMEQI 74 >gi|157373977|ref|YP_001472577.1| formate dehydrogenase, alpha subunit [Shewanella sediminis HAW-EB3] gi|157316351|gb|ABV35449.1| formate dehydrogenase, alpha subunit [Shewanella sediminis HAW-EB3] Length = 1440 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 15/95 (15%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP----AQAITIESG----------- 83 E +F + + RCI+C C +C AI+ Sbjct: 642 EPADAPRQFSIDTSSPFITFDANRCISCGACVEVCQGQDGHNAISFAPDNYQALPTEIAV 701 Query: 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +C R ++ C+ CG C + CP A+ Sbjct: 702 QQCKRAPRAGFSASMNDSDCVQCGSCVQVCPTGAL 736 >gi|149915521|ref|ZP_01904047.1| dihydroorotate dehydrogenase family protein [Roseobacter sp. AzwK-3b] gi|149810413|gb|EDM70256.1| dihydroorotate dehydrogenase family protein [Roseobacter sp. AzwK-3b] Length = 434 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 8/63 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117 ++ CI C C A C E +++ +C+ C LC CPVD Sbjct: 343 DQDACIKCGRCYAAC-------EDTSHQAISMSEDRVFEVIDAECVACNLCVNVCPVDGC 395 Query: 118 IVE 120 I Sbjct: 396 ITM 398 >gi|148378021|ref|YP_001252562.1| iron-sulfur cluster-binding protein [Clostridium botulinum A str. ATCC 3502] gi|148287505|emb|CAL81564.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC 3502] Length = 354 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 5/58 (8%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+CI C C +CP + I+ + +M KCI C CQE CP AI Sbjct: 286 EKCIGCNRCAEVCPEKPYVIDMIKKGGKKIPVW-----NMKKCIRCFCCQELCPKGAI 338 >gi|77920192|ref|YP_358007.1| glutamate synthase subunit beta-like [Pelobacter carbinolicus DSM 2380] gi|77546275|gb|ABA89837.1| glutamate synthase, beta subunit-like protein [Pelobacter carbinolicus DSM 2380] Length = 547 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 29/84 (34%), Gaps = 14/84 (16%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPR---------CHDGTRRTVRYDIDMIK-- 102 + ERC C C A C AI + R TR T + I Sbjct: 16 WKIQYHPERCTLCGSCIAACTFDAIGPKMERRRITFTESATPEPKTRFTAQPVIAQANKI 75 Query: 103 ---CIYCGLCQEACPVDAIVEGPN 123 C CG+C+ CP +AI N Sbjct: 76 KNFCRGCGVCERVCPNNAISSSRN 99 >gi|78221904|ref|YP_383651.1| electron transfer flavoprotein subunit alpha [Geobacter metallireducens GS-15] gi|78193159|gb|ABB30926.1| Electron transfer flavoprotein, alpha subunit [Geobacter metallireducens GS-15] Length = 443 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 11/62 (17%) Query: 60 EERCIACK-LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +CIAC C++ CP AI + I KCI C C + CP DA+ Sbjct: 18 PGKCIACGARCQSACPVDAIEMSDAGEP----------IILSEKCIGCLKCVKVCPADAL 67 Query: 119 VE 120 Sbjct: 68 EM 69 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 14/24 (58%), Positives = 14/24 (58%), Gaps = 1/24 (4%) Query: 100 MIKCIYCGL-CQEACPVDAIVEGP 122 KCI CG CQ ACPVDAI Sbjct: 18 PGKCIACGARCQSACPVDAIEMSD 41 >gi|116753332|ref|YP_842450.1| putative ATPase RIL [Methanosaeta thermophila PT] gi|116664783|gb|ABK13810.1| ABC transporter related protein [Methanosaeta thermophila PT] Length = 584 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 3/73 (4%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 +R +RC K C C + +G + I C+ CG+C Sbjct: 1 MRIAVVNRDRCQPRK-CARECEYFCPPVRTGD--ETIVFVDDKPVITENLCVGCGICVRK 57 Query: 113 CPVDAIVEGPNFE 125 CP AI E Sbjct: 58 CPFGAITITNLPE 70 >gi|293401784|ref|ZP_06645925.1| putative 4Fe-4S binding domain protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304736|gb|EFE45984.1| putative 4Fe-4S binding domain protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 208 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 12/66 (18%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L + CI C C + CP Q I ++ Y I C++CGLC E Sbjct: 148 LHDGYQIQTNCIGCNKCLSSCPQQCI------------KQGKPYHIVQSHCLHCGLCYEL 195 Query: 113 CPVDAI 118 CPV AI Sbjct: 196 CPVHAI 201 >gi|283769432|ref|ZP_06342330.1| hydrogenase, Fe-only [Bulleidia extructa W1219] gi|283103957|gb|EFC05342.1| hydrogenase, Fe-only [Bulleidia extructa W1219] Length = 490 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 9/65 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++C C LC C A ++ +G R CI CG C ACP D I Sbjct: 23 DLDKCKNCTLCRRACVNDAGVMDFYDLTTNGDRPI---------CINCGQCAVACPFDCI 73 Query: 119 VEGPN 123 E Sbjct: 74 NERSE 78 >gi|262274542|ref|ZP_06052353.1| electron transport complex protein RnfB [Grimontia hollisae CIP 101886] gi|262221105|gb|EEY72419.1| electron transport complex protein RnfB [Grimontia hollisae CIP 101886] Length = 194 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 10/66 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E+ CI C C CP AI + + + +C C LC CP D Sbjct: 108 FIHEDDCIGCTKCIQACPVDAIVGSTK----------AMHTVIKDECTGCDLCVAPCPTD 157 Query: 117 AIVEGP 122 I P Sbjct: 158 CIEMIP 163 >gi|218131017|ref|ZP_03459821.1| hypothetical protein BACEGG_02620 [Bacteroides eggerthii DSM 20697] gi|317477088|ref|ZP_07936330.1| 4Fe-4S binding domain-containing protein [Bacteroides eggerthii 1_2_48FAA] gi|217986721|gb|EEC53054.1| hypothetical protein BACEGG_02620 [Bacteroides eggerthii DSM 20697] gi|316906881|gb|EFV28593.1| 4Fe-4S binding domain-containing protein [Bacteroides eggerthii 1_2_48FAA] Length = 373 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 10/55 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 CI C +C C AI + + + ID KC+ CG C C Sbjct: 192 DTGNCIGCNICVKHCAHDAIHLNAERKAE----------IDYAKCVGCGQCVALC 236 >gi|171059431|ref|YP_001791780.1| formate dehydrogenase subunit alpha [Leptothrix cholodnii SP-6] gi|170776876|gb|ACB35015.1| formate dehydrogenase, alpha subunit [Leptothrix cholodnii SP-6] Length = 969 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 24/75 (32%), Gaps = 3/75 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T SG + +C+ CG C + Sbjct: 171 YFTYDPSKCIVCNRCVRACEETQGTFALTISGRGFESRVSAGMDEPFMQSECVSCGACVQ 230 Query: 112 ACPVDAIVEGPNFEF 126 ACP + E E Sbjct: 231 ACPTATLTEKSVIEL 245 >gi|168211789|ref|ZP_02637414.1| [Fe] hydrogenase [Clostridium perfringens B str. ATCC 3626] gi|170710254|gb|EDT22436.1| [Fe] hydrogenase [Clostridium perfringens B str. ATCC 3626] Length = 696 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 9/68 (13%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 EE+CI C C+ IC ++ D CI CG C CP Sbjct: 21 CRDEEKCIKCGSCKNICTD---------YIGVNGHYSLEKTNDTAVCINCGQCANVCPTS 71 Query: 117 AIVEGPNF 124 +I E ++ Sbjct: 72 SITEVFDY 79 >gi|218780081|ref|YP_002431399.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfatibacillum alkenivorans AK-01] gi|218761465|gb|ACL03931.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfatibacillum alkenivorans AK-01] Length = 269 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 29/82 (35%), Gaps = 13/82 (15%) Query: 38 FEKGSTSPRFRGEHALRRY--PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 G+ FR A EE C C C +CP AITIE D Sbjct: 170 EVPGNKPYIFRDRSAWEHIAASTIEETCTLCGDCVDMCPMGAITIEDDAVKTDNMA---- 225 Query: 96 YDIDMIKCIYCGLCQEACPVDA 117 CI C C + CPV+A Sbjct: 226 -------CILCCACIKGCPVNA 240 >gi|160938700|ref|ZP_02086052.1| hypothetical protein CLOBOL_03595 [Clostridium bolteae ATCC BAA-613] gi|158438399|gb|EDP16158.1| hypothetical protein CLOBOL_03595 [Clostridium bolteae ATCC BAA-613] Length = 361 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 15/74 (20%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++C++CK CE +C A + +DM KC CGLC + CP A+ Sbjct: 289 KKCVSCKKCETVCCYDARKLT-----------FPEMTVDMDKCRCCGLCLDVCPTGALTA 337 Query: 121 GPNFEFATETRQEL 134 E A +T ++L Sbjct: 338 ----ELAPQTEKDL 347 >gi|91202796|emb|CAJ72435.1| similar to sodium dependent NADH:ubiquinone oxidoreductase RnfB [Candidatus Kuenenia stuttgartiensis] Length = 274 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 30/82 (36%), Gaps = 11/82 (13%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P K + ++ CIACK CE CP AI +++ Sbjct: 188 PESKMVHVRCKSLDKGAVAKKICQDSCIACKRCEKECPYDAIHVQNNLAV---------- 237 Query: 97 DIDMIKCIYCGLCQEACPVDAI 118 ID KC CG C + CP I Sbjct: 238 -IDYQKCTSCGKCVDVCPNHTI 258 Score = 42.4 bits (98), Expect = 0.024, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 30/77 (38%), Gaps = 5/77 (6%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRT-----VRYDIDMIKCIYCGLCQEACP 114 ERC C C +CP + I+I + ++ V I CI C C++ CP Sbjct: 166 RERCTGCGKCAEVCPREIISILPESKMVHVRCKSLDKGAVAKKICQDSCIACKRCEKECP 225 Query: 115 VDAIVEGPNFEFATETR 131 DAI N + Sbjct: 226 YDAIHVQNNLAVIDYQK 242 Score = 38.5 bits (88), Expect = 0.29, Method: Composition-based stats. Identities = 13/65 (20%), Positives = 21/65 (32%), Gaps = 10/65 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C+ C C +A+ + + +C CG C E CP + I Sbjct: 135 CDYGCLGLGTCVEACKFEAMYMGKDGLPK----------VIRERCTGCGKCAEVCPREII 184 Query: 119 VEGPN 123 P Sbjct: 185 SILPE 189 >gi|134298507|ref|YP_001112003.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfotomaculum reducens MI-1] gi|134051207|gb|ABO49178.1| putative adenylylsulfate reductase-associated electron transfer protein QmoA [Desulfotomaculum reducens MI-1] Length = 414 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 23/78 (29%), Gaps = 9/78 (11%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQ-------AITIESGPRCHDGTRRTVRYDIDMIKCI 104 + C C C +CP + + ++Y ID C Sbjct: 94 VKMNPRYVTDNCTGCGKCSEVCPVERANAFNLGMDKTKAVYLPQPFAYPMKYVIDNTACT 153 Query: 105 Y--CGLCQEACPVDAIVE 120 CG C E C V AI Sbjct: 154 GASCGKCVEVCDVKAIDL 171 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 3/67 (4%) Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV---DAIVEGPNFEFATETRQELYYD 137 SG + + C CG C E CPV +A G + A Q Y Sbjct: 83 ISGQEGNFDVTVKMNPRYVTDNCTGCGKCSEVCPVERANAFNLGMDKTKAVYLPQPFAYP 142 Query: 138 KERLLNN 144 + +++N Sbjct: 143 MKYVIDN 149 >gi|323701256|ref|ZP_08112931.1| FAD dependent oxidoreductase [Desulfotomaculum nigrificans DSM 574] gi|323533858|gb|EGB23722.1| FAD dependent oxidoreductase [Desulfotomaculum nigrificans DSM 574] Length = 416 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 25/70 (35%), Gaps = 9/70 (12%) Query: 61 ERCIACKLCEAICPAQ-------AITIESGPRCHDGTRRTVRYDIDMIKCIY--CGLCQE 111 + C C C +CP + + ++Y ID C CG C E Sbjct: 103 DNCTGCGKCAEVCPVERANDFNFGLDKTKAAYLAHPFAFPMKYVIDDTACTGASCGKCVE 162 Query: 112 ACPVDAIVEG 121 AC V AI G Sbjct: 163 ACEVKAIDLG 172 Score = 35.5 bits (80), Expect = 2.6, Method: Composition-based stats. Identities = 8/22 (36%), Positives = 10/22 (45%) Query: 94 VRYDIDMIKCIYCGLCQEACPV 115 ++ C CG C E CPV Sbjct: 96 IKPRYVADNCTGCGKCAEVCPV 117 >gi|315425450|dbj|BAJ47114.1| ABC transporter ATP-binding protein [Candidatus Caldiarchaeum subterraneum] Length = 595 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 9/82 (10%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 L R ++C C CP IE+ DG I CI CG+C + Sbjct: 9 VLDRDRCDSKKCGN-WPCITYCPPVRNNIEAIKMGEDGF-----PIISETLCISCGICVK 62 Query: 112 ACPVDAIVEGPNFEFATETRQE 133 CP +AI TE R++ Sbjct: 63 KCPFEAITIIN---LPTELRED 81 >gi|254519305|ref|ZP_05131361.1| electron transport complex protein [Clostridium sp. 7_2_43FAA] gi|226913054|gb|EEH98255.1| electron transport complex protein [Clostridium sp. 7_2_43FAA] Length = 308 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 21/57 (36%), Gaps = 1/57 (1%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 CI C C +CP I+ G + KCI CGLC ACP Sbjct: 237 EESYSCIRCGKCLRVCPEGLNPIKLVELYKMGEKEEFI-KFGGEKCIDCGLCSFACP 292 >gi|241948529|ref|XP_002416987.1| ABC-family memebr, APTPase, iron-sulfur protein required for ribosome biogenesis and translation initiation, putative [Candida dubliniensis CD36] gi|223640325|emb|CAX44575.1| ABC-family memebr, APTPase, iron-sulfur protein required for ribosome biogenesis and translation initiation, putative [Candida dubliniensis CD36] Length = 622 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 25/56 (44%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 K C+ C +++G C + T + I CI CG+C + CP DAI Sbjct: 34 KKCKQECRKSCPVVKTGKLCIEVTPASKIAFISETLCIGCGICVKKCPFDAITIIN 89 >gi|218133772|ref|ZP_03462576.1| hypothetical protein BACPEC_01641 [Bacteroides pectinophilus ATCC 43243] gi|217991147|gb|EEC57153.1| hypothetical protein BACPEC_01641 [Bacteroides pectinophilus ATCC 43243] Length = 265 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 29/88 (32%), Gaps = 11/88 (12%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P++ T + CI C LC C AIT+E+ Sbjct: 189 IPYDAPLTVNCASKDKGKDVMAVCSTGCIGCMLCTKQCEFGAITVENNIAH--------- 239 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPN 123 ID KC CG C E CP I N Sbjct: 240 --IDYDKCTGCGKCAEKCPKKIITRHNN 265 Score = 35.1 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 25/78 (32%), Gaps = 5/78 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQEAC 113 +E+C AC C A CP I + + + CI C LC + C Sbjct: 167 DKEKCKACGKCVATCPRNLIELIPYDAPLTVNCASKDKGKDVMAVCSTGCIGCMLCTKQC 226 Query: 114 PVDAIVEGPNFEFATETR 131 AI N + Sbjct: 227 EFGAITVENNIAHIDYDK 244 >gi|242006426|ref|XP_002424051.1| ATP-binding cassette subfamily E, member 1 [Pediculus humanus corporis] gi|212507357|gb|EEB11313.1| ATP-binding cassette subfamily E, member 1 [Pediculus humanus corporis] Length = 608 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 21/56 (37%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 K C+ C + G C + I CI CG+C + CP +AI Sbjct: 27 KRCKQECKKSCPVVRMGKLCIEVVPNDKIATISEELCIGCGICVKKCPFEAITIIN 82 >gi|153955946|ref|YP_001396711.1| hypothetical protein CKL_3337 [Clostridium kluyveri DSM 555] gi|219856288|ref|YP_002473410.1| hypothetical protein CKR_2945 [Clostridium kluyveri NBRC 12016] gi|146348804|gb|EDK35340.1| Automatic annotation [Clostridium kluyveri DSM 555] gi|219570012|dbj|BAH07996.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 1172 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 37/118 (31%), Gaps = 24/118 (20%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAIT-----IESGPRCHDGTRRTV-------- 94 RG + ++CI C C +CP I E G + Sbjct: 675 RGIAVMIPEWQ-IDKCIQCNQCAMVCPHATIRSFLLNEEEVKNSPQGFQSKKALGSGLDG 733 Query: 95 ---RYDIDMIKCIYCGLCQEACPVD--AIVEGPNFEFATETRQELYY-----DKERLL 142 + + + C CG C + CP A+V P E + Y KE L+ Sbjct: 734 LNFKIQVSPMDCTGCGNCADICPAPGKALVMKPLEEKVDVESENWDYALKITPKEDLI 791 >gi|78356256|ref|YP_387705.1| heterodisulfide reductase subunit A [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218661|gb|ABB38010.1| heterodisulfide reductase, A subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 660 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 6/64 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RC+ C C CP A+ + V+ D+ C CG+C CP AI Sbjct: 580 DTARCVGCMKCAMTCPFGAVRETQDRAGN------VKADVLETVCQGCGICTATCPHGAI 633 Query: 119 VEGP 122 Sbjct: 634 QLQH 637 Score = 37.8 bits (86), Expect = 0.47, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 29/98 (29%), Gaps = 13/98 (13%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP--------RCHDGTRRTVRYD 97 F + R+ +C C LC CP++ + Sbjct: 225 NFEVKIRRRQTYVDWSKCTGCGLCMEKCPSKKSFDRFNEGVATTTAINIPFPQAIPKKAS 284 Query: 98 IDMIKC-----IYCGLCQEACPVDAIVEGPNFEFATET 130 ID C CG+C++ CP+ I TE Sbjct: 285 IDPDYCRKLQGKKCGVCEKFCPMGCIDFEQQETVVTEK 322 >gi|24372575|ref|NP_716617.1| formate dehydrogenase, alpha subunit [Shewanella oneidensis MR-1] gi|24346593|gb|AAN54062.1|AE015543_2 formate dehydrogenase, alpha subunit [Shewanella oneidensis MR-1] Length = 1428 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 23/75 (30%), Gaps = 15/75 (20%) Query: 59 GEERCIACKLCEAICPAQAITI---------------ESGPRCHDGTRRTVRYDIDMIKC 103 RCI+C C +C Q+ S R + C Sbjct: 647 DANRCISCGKCVDVCQQQSGHCAIQFAKDSYQVLPQSISPADERRAPRVGFSASMADSHC 706 Query: 104 IYCGLCQEACPVDAI 118 + CG C + CP A+ Sbjct: 707 VQCGNCVQVCPTGAL 721 Score = 35.1 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 4/48 (8%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 C+ C C +CP A+ R D T T I C YCG+ Sbjct: 704 SHCVQCGNCVQVCPTGALVDARDKRQGDCTELTTASTI----CTYCGV 747 >gi|332879403|ref|ZP_08447100.1| 4Fe-4S binding domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682823|gb|EGJ55723.1| 4Fe-4S binding domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 414 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 21/61 (34%), Gaps = 6/61 (9%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 +C C C C AI IE R I+ C+ CGLC + C Sbjct: 1 MIDICEYSQCTGCMACLNSCSHSAINIEFDDEG------FERPHINQDLCVDCGLCVQVC 54 Query: 114 P 114 P Sbjct: 55 P 55 >gi|255525440|ref|ZP_05392378.1| nitroreductase [Clostridium carboxidivorans P7] gi|296187867|ref|ZP_06856261.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7] gi|255510907|gb|EET87209.1| nitroreductase [Clostridium carboxidivorans P7] gi|296047824|gb|EFG87264.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7] Length = 268 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 10/60 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E+CI C C CP + + I +C+ CG C CP +AI Sbjct: 7 NKEKCIKCGACVMECPISILRMGENGPEE----------IYEDRCMSCGHCVAVCPKEAI 56 Score = 34.7 bits (78), Expect = 4.8, Method: Composition-based stats. Identities = 10/23 (43%), Positives = 12/23 (52%) Query: 101 IKCIYCGLCQEACPVDAIVEGPN 123 KCI CG C CP+ + G N Sbjct: 9 EKCIKCGACVMECPISILRMGEN 31 >gi|312111477|ref|YP_003989793.1| dihydroorotate dehydrogenase [Geobacillus sp. Y4.1MC1] gi|311216578|gb|ADP75182.1| dihydroorotate dehydrogenase family protein [Geobacillus sp. Y4.1MC1] Length = 427 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 22/71 (30%), Gaps = 4/71 (5%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 H ++ CI C C C + +G C+ C LC Sbjct: 330 HYKVVARINKDVCINCNKCYISCEDASHQCIDRLTDENGKEYLKV---REEDCVGCNLCS 386 Query: 111 EACPVD-AIVE 120 CPVD AI Sbjct: 387 IVCPVDGAIDM 397 >gi|302875429|ref|YP_003844062.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B] gi|302578286|gb|ADL52298.1| NADH dehydrogenase (quinone) [Clostridium cellulovorans 743B] Length = 613 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 34/99 (34%), Gaps = 16/99 (16%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 L+YF + E G + C C C +C AI + Sbjct: 531 TLKYF------RHEYEEHIKYKKCVAGVCNALVKYYITDDCKGCTKCMNVCAVDAINGQ- 583 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 R+ ID KCI CG C++ C DAI++ Sbjct: 584 ---------VRSRHIIDADKCIRCGACRKICSFDAIIKT 613 >gi|288942375|ref|YP_003444615.1| RnfABCDGE type electron transport complex subunit B [Allochromatium vinosum DSM 180] gi|288897747|gb|ADC63583.1| electron transport complex, RnfABCDGE type, B subunit [Allochromatium vinosum DSM 180] Length = 178 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 23/66 (34%), Gaps = 10/66 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C C CP AI + + + CI C LC E CP + Sbjct: 104 HVNEGLCIGCTKCFKRCPTDAIMGANNM----------IHVVFADACIGCELCSEICPTE 153 Query: 117 AIVEGP 122 I P Sbjct: 154 GIEMRP 159 >gi|116235066|dbj|BAF34982.1| trichloroethene reductive dehalogenase [uncultured Dehalococcoides sp.] Length = 540 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 3/60 (5%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID---MIKCIYCGLCQEACPVD 116 E C C +C CP QAI+ E Y+ KCI C C+ CP Sbjct: 420 REFCKTCGICAEHCPTQAISHEGPRYDSPYWDNVSGYEGWHLDHHKCILCTNCESFCPFF 479 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%) Query: 103 CIYCGLCQEACPVDAI-VEGPNFE 125 C CG+C E CP AI EGP ++ Sbjct: 423 CKTCGICAEHCPTQAISHEGPRYD 446 >gi|332159501|ref|YP_004424780.1| putative ATPase RIL [Pyrococcus sp. NA2] gi|331034964|gb|AEC52776.1| putative ATPase RIL [Pyrococcus sp. NA2] Length = 589 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 21/73 (28%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 +R ++C K +C G + I C CG+C Sbjct: 1 MRIAVIDYDKCNPDKCGHFLCERVCPVNRMGGEAIIIDEENNKPIIQEASCTGCGICVHK 60 Query: 113 CPVDAIVEGPNFE 125 CP AI E Sbjct: 61 CPFKAISIVNLPE 73 >gi|332158933|ref|YP_004424212.1| 2-ketoisovalerate ferredoxin oxidoreductase subunit delta [Pyrococcus sp. NA2] gi|331034396|gb|AEC52208.1| 2-ketoisovalerate ferredoxin oxidoreductase subunit delta [Pyrococcus sp. NA2] Length = 105 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 27/78 (34%), Gaps = 10/78 (12%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 F G+ E +C+ C +C CP AI I+ ID C Sbjct: 36 NFTGDWRTFMPVIDESKCVKCYICWKFCPEPAIYIKEDG----------FVAIDYDYCKG 85 Query: 106 CGLCQEACPVDAIVEGPN 123 CG+C CP AI Sbjct: 86 CGICANECPTKAITMVRE 103 >gi|330506329|ref|YP_004382757.1| 4Fe-4S ferredoxin, iron-sulfur binding domain-containing protein [Methanosaeta concilii GP-6] gi|328927137|gb|AEB66939.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Methanosaeta concilii GP-6] Length = 368 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 24/71 (33%), Gaps = 11/71 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C C+ C CP QAIT+ + ID C CG C CP A+ Sbjct: 191 NAELCEGCRACADGCPNQAITV-----------KKKITQIDYSLCTGCGKCLRLCPAHAL 239 Query: 119 VEGPNFEFATE 129 E Sbjct: 240 DFDWIVEVPPF 250 >gi|325290778|ref|YP_004266959.1| NAD-dependent formate dehydrogenase catalytic subunit [Syntrophobotulus glycolicus DSM 8271] gi|324966179|gb|ADY56958.1| NAD-dependent formate dehydrogenase catalytic subunit [Syntrophobotulus glycolicus DSM 8271] Length = 894 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 3/67 (4%) Query: 59 GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115 +CI C C C Q + +R +++ K C++CG C CPV Sbjct: 144 DLNKCILCGKCVRACSEIQVNNVLGYVNRGFESRVGPAFNLPYGKSECVFCGTCLAVCPV 203 Query: 116 DAIVEGP 122 A+ E Sbjct: 204 GALTEKK 210 Score = 34.7 bits (78), Expect = 4.2, Method: Composition-based stats. Identities = 12/52 (23%), Positives = 17/52 (32%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 P G+ C+ C C A+CP A+T + CG Sbjct: 185 PYGKSECVFCGTCLAVCPVGALTEKKMIAGGRPWELKKVRTTCPFCGTGCGF 236 >gi|323704276|ref|ZP_08115855.1| Fe-S cluster domain protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323536342|gb|EGB26114.1| Fe-S cluster domain protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 436 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 27/83 (32%), Gaps = 18/83 (21%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 +RC C C CP +AI + G I KCI CG C Sbjct: 1 MYFHSVTLDRDRCKGCTNCIKRCPTEAIRVRDGKA-----------KIIKEKCIDCGECV 49 Query: 111 EACPVDA-------IVEGPNFEF 126 CP A I N+++ Sbjct: 50 RVCPYHAKVVVTDDIGMMENYKY 72 >gi|302386096|ref|YP_003821918.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Clostridium saccharolyticum WM1] gi|302196724|gb|ADL04295.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Clostridium saccharolyticum WM1] Length = 1179 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 23/111 (20%), Positives = 31/111 (27%), Gaps = 26/111 (23%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ-----AITIESGPRCHDGTR- 91 +EK + G E CI C C +CP A+T E + + Sbjct: 677 YEKRGIAVTIPGWV--------PENCIQCNFCSYVCPHAVIRSVALTEEEAAGKPEEMKT 728 Query: 92 --------RTVRYDIDMIKCIYCGLCQEACP----VDAIVEGPNFEFATET 130 + C CG C CP A+V E E Sbjct: 729 LPMTGMPGYQFAVTVSAFDCTGCGSCANVCPGKKGEKALVMVNMEENCAEK 779 >gi|295103567|emb|CBL01111.1| hypothetical protein [Faecalibacterium prausnitzii SL3/3] Length = 255 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 32/96 (33%), Gaps = 12/96 (12%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 F + I F G +P F + CI C C +CP I +E+G Sbjct: 152 EFPPPRENIYDRFMSGPVNPVFYRFFVKADAFRATDACIGCGKCVELCPLNNIRLENGKP 211 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 + C +C C CP +AI G Sbjct: 212 ------------VWGKNCTHCMACICYCPKEAIEYG 235 >gi|294494848|ref|YP_003541341.1| phosphoadenosine phosphosulfate reductase [Methanohalophilus mahii DSM 5219] gi|292665847|gb|ADE35696.1| phosphoadenosine phosphosulfate reductase [Methanohalophilus mahii DSM 5219] Length = 633 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 12/53 (22%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 C C +C CP AI IE+ KC +CG C E CPV Sbjct: 587 CTGCGVCIGKCPHNAIRIENKIA------------YIGDKCTHCGKCIEVCPV 627 >gi|293390123|ref|ZP_06634457.1| electron transport complex protein RnfC [Aggregatibacter actinomycetemcomitans D7S-1] gi|290950657|gb|EFE00776.1| electron transport complex protein RnfC [Aggregatibacter actinomycetemcomitans D7S-1] Length = 790 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 36/112 (32%), Gaps = 13/112 (11%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E+ CI C C CP + + + + + CI CG+C CP Sbjct: 372 PEEEKNCIRCSACSDACPVK-LMPQQLYWFARSEDHEKSEEYSLKDCIECGVCAYVCPSH 430 Query: 117 AIVEGPNFEFATETRQEL----YYDKERLL-NNGDRWESEIVRNIVTDSPYR 163 I F R++ K L R+E R + + R Sbjct: 431 -IPLIQYF-----RREKAKIWEIKHKAELSGEAKIRFEQRQAR-LEREEQER 475 >gi|255502227|gb|ACU11593.1| HydII [Thermoanaerobacterium saccharolyticum] Length = 436 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 27/83 (32%), Gaps = 18/83 (21%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 +RC C C CP +AI + G I KCI CG C Sbjct: 1 MYFHSVTLDRDRCKGCTNCIKRCPTEAIRVRDGKA-----------KIIKEKCIDCGECV 49 Query: 111 EACPVDA-------IVEGPNFEF 126 CP A I N+++ Sbjct: 50 RVCPYHAKVVVTDDIGMMENYKY 72 >gi|253682030|ref|ZP_04862827.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum D str. 1873] gi|253561742|gb|EES91194.1| dihydroorotate dehydrogenase family protein [Clostridium botulinum D str. 1873] Length = 411 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/110 (14%), Positives = 33/110 (30%), Gaps = 7/110 (6%) Query: 15 EFVGAFFLCLRY-FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + + ++ F+ + K + ++C+ C C C Sbjct: 295 DMISGLSYYMKEKGFEKLEDMVGLALKNIIPAEELDRDYIVYPEFNMDKCVGCGRCYISC 354 Query: 74 PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 G + + ++ KC+ C LC CP+ I +G Sbjct: 355 YDG------GHQAIEWDLENRLPVLNEEKCVGCHLCSNVCPIQCINKGKI 398 >gi|221195321|ref|ZP_03568377.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Atopobium rimae ATCC 49626] gi|221185224|gb|EEE17615.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Atopobium rimae ATCC 49626] Length = 343 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 15/66 (22%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + +Y ++ CI C C C ++ CI CG C +A Sbjct: 237 ILQYRVDKDACIKCGKCARTCKMDVDITKNNASLE---------------CIRCGECIKA 281 Query: 113 CPVDAI 118 CPV AI Sbjct: 282 CPVHAI 287 >gi|218661813|ref|ZP_03517743.1| NADH-ubiquinone oxidoreductase protein, chain G [Rhizobium etli IE4771] Length = 241 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 3/80 (3%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 + S R + N RCI C+ C +C + G ++ Sbjct: 128 RVFHSEDIRLSPVIIMNVN---RCIQCQRCVRMCEEVVGAVALGTVEKGMDTAVTGFEGS 184 Query: 100 MIKCIYCGLCQEACPVDAIV 119 + C CG C E CPV A++ Sbjct: 185 LASCDQCGNCVEVCPVGALM 204 >gi|218461919|ref|ZP_03502010.1| NADH-ubiquinone oxidoreductase protein, chain G [Rhizobium etli Kim 5] Length = 209 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 3/80 (3%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 + S R + N RCI C+ C +C + G ++ Sbjct: 128 RVFHSEDIRLSPVIIMNVN---RCIQCQRCVRMCEEVVGAVALGTVEKGMDTAVTGFEGS 184 Query: 100 MIKCIYCGLCQEACPVDAIV 119 + C CG C E CPV A++ Sbjct: 185 LASCDQCGNCVEVCPVGALM 204 >gi|145299789|ref|YP_001142630.1| glutamate synthase (NADPH) small subunit [Aeromonas salmonicida subsp. salmonicida A449] gi|142852561|gb|ABO90882.1| pyridine nucleotide-disulphide oxidoreductase family protein [Aeromonas salmonicida subsp. salmonicida A449] Length = 533 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 21/89 (23%), Gaps = 3/89 (3%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P G RC +C C Y Sbjct: 446 PAWARDDFGEIIGGLDETAARYEAARCYSCGNC--FECDGCYGSCPEQAIE-KLGPGKGY 502 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 +D +C CG C + CP AI E Sbjct: 503 QVDATRCTGCGACHDQCPCHAIELRQPEE 531 >gi|123475006|ref|XP_001320683.1| 4Fe-4S binding domain containing protein [Trichomonas vaginalis G3] gi|121903493|gb|EAY08460.1| 4Fe-4S binding domain containing protein [Trichomonas vaginalis G3] Length = 496 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 6/65 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C +CPA +T + + + C+ CG C E CP + Sbjct: 130 NHETCIDCFKCVDVCPAHVLTKGDHLQT------FGYFGLKESGCLSCGNCLEVCPTKSF 183 Query: 119 VEGPN 123 N Sbjct: 184 SITDN 188 >gi|114321660|ref|YP_743343.1| formate dehydrogenase, alpha subunit [Alkalilimnicola ehrlichii MLHE-1] gi|114228054|gb|ABI57853.1| NAD-dependent formate dehydrogenase catalytic subunit / NAD-dependent formate dehydrogenase iron-sulfur protein [Alkalilimnicola ehrlichii MLHE-1] Length = 927 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 30/88 (34%), Gaps = 10/88 (11%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 +P ++R CI C C C + + H G R V Sbjct: 128 RFPARSQPAPDASHPAMSVRLD-----ACIQCTRCLRACREE-QANDVIGMAHRGDRTAV 181 Query: 95 RYD----IDMIKCIYCGLCQEACPVDAI 118 +D + C+ CG C +ACP A+ Sbjct: 182 VFDLADPMGRSSCVACGECVQACPTGAL 209 >gi|328952785|ref|YP_004370119.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] gi|328453109|gb|AEB08938.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] Length = 353 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 3/67 (4%) Query: 55 RYPNGEERCIACKLCEAIC---PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 +CI C C C H+ + C++CG C + Sbjct: 142 MIVRDFSKCIMCGRCVRACNERQVNLAIQIGYRGSHNKIVAKCDFPYFNSDCVFCGTCVQ 201 Query: 112 ACPVDAI 118 ACPV A+ Sbjct: 202 ACPVGAL 208 >gi|320353843|ref|YP_004195182.1| fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein [Desulfobulbus propionicus DSM 2032] gi|320122345|gb|ADW17891.1| fumarate reductase/succinate dehydrogenase flavoprotein domain protein [Desulfobulbus propionicus DSM 2032] Length = 1027 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 29/86 (33%), Gaps = 16/86 (18%) Query: 57 PNGEERCIACKLCEAICP------AQAI-TIESGPRCHDGTRRTVRYDIDMIKCIY---- 105 +CIAC C CP A T ++Y ID CI+ Sbjct: 104 YVDTAKCIACGQCSGSCPKSVDDSFNANITKRKAIYIKYPQAVPLKYQIDPQACIHLNNA 163 Query: 106 --CGLCQEACPVDAIVEGP---NFEF 126 CGLC E CP AI + E Sbjct: 164 EKCGLCAEICPPGAINFADRERDHEL 189 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 27/58 (46%), Gaps = 2/58 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 C C LC +CP QAIT+ R+TV ID + C CG+CQ CP Sbjct: 942 NPILCDGCGLCVEVCPYQAITLAEYRDESGEPRKTVH--IDQVLCKGCGICQGTCPKR 997 Score = 40.9 bits (94), Expect = 0.064, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 21/40 (52%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 ++ I C CGLC E CP AI + + E R+ ++ D Sbjct: 941 VNPILCDGCGLCVEVCPYQAITLAEYRDESGEPRKTVHID 980 >gi|313157716|gb|EFR57127.1| 4Fe-4S binding domain protein [Alistipes sp. HGB5] Length = 384 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 6/57 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 + C C C CP Q I + +D +C+ CGLC++ CPV Sbjct: 6 NKRDCCGCNACVQKCPQQCIGQSEDAEG------FIYPQVDKARCVGCGLCEKVCPV 56 >gi|322421699|ref|YP_004200922.1| Fis family sigma-54 specific transcriptional regulator [Geobacter sp. M18] gi|320128086|gb|ADW15646.1| sigma54 specific transcriptional regulator, Fis family [Geobacter sp. M18] Length = 760 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 11/63 (17%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++C C C CP +AI +E +I +CI CG C CP A V Sbjct: 9 DQCRKCYSCVRSCPVKAIKVEK-----------SYTEIIFERCIGCGNCLSNCPQHAKVI 57 Query: 121 GPN 123 N Sbjct: 58 ADN 60 >gi|254578922|ref|XP_002495447.1| ZYRO0B11616p [Zygosaccharomyces rouxii] gi|238938337|emb|CAR26514.1| ZYRO0B11616p [Zygosaccharomyces rouxii] Length = 607 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 4/76 (5%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +RC K C C +++G C + T + I + CI CG+C + CP AI Sbjct: 12 NPDRCKP-KKCRQECRRSCPVVKTGKLCIEVTPASKIAFISEVLCIGCGICVKKCPFGAI 70 Query: 119 VEGP---NFEFATETR 131 N E R Sbjct: 71 NIINLPTNLEQHVTHR 86 >gi|237653653|ref|YP_002889967.1| electron transport complex, RnfABCDGE type, C subunit [Thauera sp. MZ1T] gi|237624900|gb|ACR01590.1| electron transport complex, RnfABCDGE type, C subunit [Thauera sp. MZ1T] Length = 481 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 2/66 (3%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C C +CP + +E R G R ++ M C+ CG C CP + Sbjct: 368 CLHCGRCVDVCPVGLVPLELAARVRAG-RIDDAAELGMGDCLSCGCCAYVCPAH-LPLAH 425 Query: 123 NFEFAT 128 F +A Sbjct: 426 LFNYAK 431 Score = 38.2 bits (87), Expect = 0.40, Method: Composition-based stats. Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 4/39 (10%) Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERL 141 C++CG C + CPV + E A R D L Sbjct: 368 CLHCGRCVDVCPVGLVPL----ELAARVRAGRIDDAAEL 402 >gi|182417629|ref|ZP_02948948.1| pyruvate:ferredoxin oxidoreductase [Clostridium butyricum 5521] gi|237667867|ref|ZP_04527851.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378353|gb|EDT75884.1| pyruvate:ferredoxin oxidoreductase [Clostridium butyricum 5521] gi|237656215|gb|EEP53771.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 1173 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 28/100 (28%), Gaps = 19/100 (19%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI-----------------ESGPR 85 TS + A+ +CI C C +CP AI Sbjct: 673 TSAYEKRGVAVNVPEWDSSKCIQCNQCAFVCPHAAIRPFLLNEEEANNAPESVKLVPAKA 732 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVD--AIVEGPN 123 + + C CG C + CP A+V P Sbjct: 733 LKSEETLQYSIGVTPLDCTGCGNCAQVCPAPGKALVMKPQ 772 >gi|150400805|ref|YP_001324571.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanococcus aeolicus Nankai-3] gi|150013508|gb|ABR55959.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus aeolicus Nankai-3] Length = 418 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 30/117 (25%), Positives = 41/117 (35%), Gaps = 14/117 (11%) Query: 9 SFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKL 68 S +L EFV + + T E R+R + P +CI+C Sbjct: 4 SLWYLYEFVR------KKWISNFTCAKTDVESTIPQKRYRKIPVMVELPE---KCISCGA 54 Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 C CP AI + + ID CI C LC E+CP + G E Sbjct: 55 CAGACPCFAIEMVKNDEYNK-----ELPVIDDDSCITCALCVESCPTGVLDIGTVKE 106 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 8/69 (11%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + Y E+ CI C++C +C S T I+ C+ CGLC C Sbjct: 306 KCYIVNEDACIGCRICYKVCGVDDTINISSE--------TRMPYINPKLCVRCGLCYNEC 357 Query: 114 PVDAIVEGP 122 PV+AI Sbjct: 358 PVNAIDLTD 366 Score = 42.0 bits (97), Expect = 0.029, Method: Composition-based stats. Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 4/64 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGT----RRTVRYDIDMIKCIYCGLCQEACP 114 ++ CI C LC CP + I + DG + ID C+ CGLC+ ACP Sbjct: 80 DDDSCITCALCVESCPTGVLDIGTVKEDTDGRAFSVPKYTNLIIDEELCVNCGLCKNACP 139 Query: 115 VDAI 118 VDAI Sbjct: 140 VDAI 143 Score = 40.9 bits (94), Expect = 0.062, Method: Composition-based stats. Identities = 27/114 (23%), Positives = 38/114 (33%), Gaps = 11/114 (9%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 K T R EE C+ C LC+ CP AI + I Sbjct: 104 VKEDTDGRAFSVPKYTNLIIDEELCVNCGLCKNACPVDAIDYNE-----------KTHYI 152 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEI 152 CI C C + CPV ++ + + E + Y K L D + +I Sbjct: 153 IDNDCIECMECIKVCPVKDAIKTYDEKLLKEKFDKTQYLKYDRLTKLDNFNEDI 206 Score = 40.9 bits (94), Expect = 0.069, Method: Composition-based stats. Identities = 17/53 (32%), Positives = 19/53 (35%) Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 A T R+ KCI CG C ACP AI N E+ E Sbjct: 23 AKTDVESTIPQKRYRKIPVMVELPEKCISCGACAGACPCFAIEMVKNDEYNKE 75 >gi|86359438|ref|YP_471330.1| formate dehydrogenase, alpha subunit protein [Rhizobium etli CFN 42] gi|86283540|gb|ABC92603.1| formate dehydrogenase, alpha subunit protein [Rhizobium etli CFN 42] Length = 959 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 31/85 (36%), Gaps = 3/85 (3%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRT--VRYDIDMI 101 + + + +CI C LC C Q + G+R + + + Sbjct: 160 KWMPKDESNPYFTYDPSKCIVCSLCVRACEEVQGTFALTIEGRGFGSRVSPGMHENFMDS 219 Query: 102 KCIYCGLCQEACPVDAIVEGPNFEF 126 +C+ CG C +ACP + E E Sbjct: 220 ECVSCGACVQACPTATLTEKSVIEI 244 >gi|85858317|ref|YP_460519.1| methyl-viologen-reducing hydrogenase subunit delta [Syntrophus aciditrophicus SB] gi|85859241|ref|YP_461443.1| methyl-viologen-reducing hydrogenase subunit delta [Syntrophus aciditrophicus SB] gi|85721408|gb|ABC76351.1| methyl-viologen-reducing hydrogenase, delta subunit [Syntrophus aciditrophicus SB] gi|85722332|gb|ABC77275.1| methyl-viologen-reducing hydrogenase, delta subunit [Syntrophus aciditrophicus SB] Length = 243 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 10/61 (16%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 Y E+C AC C CP AI + I+ KCI CG C AC Sbjct: 159 ISYYIDPEKCQACMTCARRCPMDAIISAKKE----------VHIIEQDKCIRCGACFAAC 208 Query: 114 P 114 P Sbjct: 209 P 209 >gi|148259850|ref|YP_001233977.1| formate dehydrogenase, alpha subunit [Acidiphilium cryptum JF-5] gi|326403222|ref|YP_004283303.1| formate dehydrogenase alpha subunit [Acidiphilium multivorum AIU301] gi|146401531|gb|ABQ30058.1| formate dehydrogenase alpha subunit [Acidiphilium cryptum JF-5] gi|325050083|dbj|BAJ80421.1| formate dehydrogenase alpha subunit [Acidiphilium multivorum AIU301] Length = 946 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 3/75 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T +G + +C+ CG C + Sbjct: 159 YFQFDPAKCIVCSRCVRACEEVQGTFALTIAGRGFDSKVSPGMEESFFESECVSCGACVQ 218 Query: 112 ACPVDAIVEGPNFEF 126 ACP ++E E Sbjct: 219 ACPTATLMETSVVEI 233 >gi|332526726|ref|ZP_08402828.1| RnfABCDGE type electron transport complex subunit B [Rubrivivax benzoatilyticus JA2] gi|332111129|gb|EGJ11161.1| RnfABCDGE type electron transport complex subunit B [Rubrivivax benzoatilyticus JA2] Length = 219 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 26/82 (31%), Gaps = 10/82 (12%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E P E E CI C LC CP I + + + Sbjct: 61 EARPLDPAHGAEGPRGLAVVDESWCIGCTLCLKACPVDCIVGANK----------RMHTV 110 Query: 99 DMIKCIYCGLCQEACPVDAIVE 120 C CGLC ACPVD I Sbjct: 111 IDALCTGCGLCLPACPVDCITM 132 >gi|301156225|emb|CBW15696.1| fused predicted 4Fe-4S ferredoxin-type protein/conserved protein [Haemophilus parainfluenzae T3T1] Length = 776 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 1/58 (1%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 P E+ CI C C CP + + + + CI CG+C CP Sbjct: 372 PEPEQSCIRCSACSDACPVN-LMPQQLYWYARSEDHQKSEEYCLKDCIECGVCAYVCP 428 >gi|300088596|ref|YP_003759118.1| reductive dehalogenase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528329|gb|ADJ26797.1| reductive dehalogenase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 455 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/101 (17%), Positives = 29/101 (28%), Gaps = 12/101 (11%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP----RCHDGTRRT 93 F + F +E C C C CP+ A++ E P + + Sbjct: 309 FYMTTMITDFPMAPDKPIDIGLKEFCTTCMKCADACPSGALSFEKEPYWETKGEWNNKGH 368 Query: 94 VRYDIDMIKCIY--------CGLCQEACPVDAIVEGPNFEF 126 + + C+ CG+C CP E Sbjct: 369 KAWFENSKNCMGFWLETNTLCGICFRECPFSKYDAANVHEL 409 >gi|225572040|ref|ZP_03780904.1| hypothetical protein RUMHYD_00334 [Blautia hydrogenotrophica DSM 10507] gi|225040475|gb|EEG50721.1| hypothetical protein RUMHYD_00334 [Blautia hydrogenotrophica DSM 10507] Length = 584 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 11/55 (20%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 C C C C +AI++++ I +CIYCG C E CP +A Sbjct: 11 CRHCYKCVRNCEVKAISVQNQQA-----------RIIEEECIYCGHCLEVCPQNA 54 >gi|197119283|ref|YP_002139710.1| iron-sulfur cluster-binding DUF162/cysteine-rich domain-containing protein [Geobacter bemidjiensis Bem] gi|197088643|gb|ACH39914.1| iron-sulfur cluster-binding DUF162/cysteine-rich domain protein [Geobacter bemidjiensis Bem] Length = 711 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 33/101 (32%), Gaps = 14/101 (13%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYD------ 97 R E A +CI C C +CP S GT T +D Sbjct: 291 RTEMAQDPKFKQALQCIRCGSCLNVCPIFRLVGGHVFGSIYTGGIGTILTAWFDELKKSE 350 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 CI CG C+E CP E E R+ L +K Sbjct: 351 DIQGLCIQCGNCKEVCPGKL----DIPEMIMEIRRRLVLEK 387 >gi|117620985|ref|YP_857665.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117562392|gb|ABK39340.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 1181 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 31/123 (25%), Gaps = 18/123 (14%) Query: 31 KTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES------ 82 + P + + A + C C C A CP AI + Sbjct: 660 PVSAFPPDGTWPVGTTRWEKRNIAKEVPIWQADLCTQCNYCVAACPHSAIRAKVVDKEAL 719 Query: 83 ----------GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 + D + + C C LC E CP E E+R Sbjct: 720 EQAPATLDALDVKARDMRGQQYVLQVAPEDCTGCNLCVEVCPAKDRTEPSRKAINMESRL 779 Query: 133 ELY 135 + Sbjct: 780 DHL 782 >gi|20806863|ref|NP_622034.1| ferredoxin 3 [Thermoanaerobacter tengcongensis MB4] gi|20515333|gb|AAM23638.1| Ferredoxin 3 [Thermoanaerobacter tengcongensis MB4] Length = 81 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 26/62 (41%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +++CI C+ C +CP + + R + KCI C C E CP +AI Sbjct: 16 DDKKCIGCRRCVEVCPEDVYELVKREGETNPNREYKSIALYPEKCILCLSCLEICPTNAI 75 Query: 119 VE 120 Sbjct: 76 YI 77 >gi|260886835|ref|ZP_05898098.1| ferredoxin hydrogenase [Selenomonas sputigena ATCC 35185] gi|330839361|ref|YP_004413941.1| hydrogenase, Fe-only [Selenomonas sputigena ATCC 35185] gi|260863434|gb|EEX77934.1| ferredoxin hydrogenase [Selenomonas sputigena ATCC 35185] gi|329747125|gb|AEC00482.1| hydrogenase, Fe-only [Selenomonas sputigena ATCC 35185] Length = 586 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 3/68 (4%) Query: 59 GEERCIACKLCEAIC-PAQAITIESGPRCHDGTRRTVRYDIDMI--KCIYCGLCQEACPV 115 +CI C C C Q I + D T YD + CI CG C CP Sbjct: 148 DPTKCIKCGRCIRACKDVQGIEALNFAGRSDKITVTTAYDSPLEATDCILCGQCSLVCPT 207 Query: 116 DAIVEGPN 123 AI E + Sbjct: 208 GAITEKDD 215 >gi|297568826|ref|YP_003690170.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfurivibrio alkaliphilus AHT2] gi|296924741|gb|ADH85551.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfurivibrio alkaliphilus AHT2] Length = 331 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 25/100 (25%), Gaps = 15/100 (15%) Query: 19 AFFLC----LRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP 74 + + K + F S L R +C C C C Sbjct: 210 GMAITGLFIIGSLVKPRF--FCLFCPMSAFHYIFSRLGLLRLTKNGAKCTRCGNCYRACD 267 Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 I Y+I C+ CG C E CP Sbjct: 268 VGIRAIADDLES---------YNIVQDDCMMCGKCIEVCP 298 >gi|225848283|ref|YP_002728446.1| NADH dehydrogenase I subunit G [Sulfurihydrogenibium azorense Az-Fu1] gi|225644123|gb|ACN99173.1| NADH dehydrogenase i chain g [Sulfurihydrogenibium azorense Az-Fu1] Length = 626 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 38/89 (42%), Gaps = 6/89 (6%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRRT 93 PFEK + ++ RC+ C C ++C Q+ ++ R + Sbjct: 128 TPFEKIREEVDWESDY----LEYVSNRCVLCMKCVSVCDNINQSHSLYPLERAFETLIDP 183 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 V+ +D C CGLC + CPV AI+ P Sbjct: 184 VKKPMDTSSCEMCGLCVDICPVGAILFKP 212 >gi|167772589|ref|ZP_02444642.1| hypothetical protein ANACOL_03968 [Anaerotruncus colihominis DSM 17241] gi|167665067|gb|EDS09197.1| hypothetical protein ANACOL_03968 [Anaerotruncus colihominis DSM 17241] Length = 584 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 25/73 (34%), Gaps = 3/73 (4%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---YDIDMIKCIYCGLCQ 110 + +CI C+ C A C GP ++D + C+ CG C Sbjct: 142 VHMVRDDNKCILCRRCVAACAKWQGIGVIGPNERGFNTHIACAFEQNLDEVACVSCGQCI 201 Query: 111 EACPVDAIVEGPN 123 CP AI E Sbjct: 202 VVCPTGAIYEKDQ 214 >gi|2127962|pir||E64448 heterodisulfide reductase (EC 1.-.-.-) - Methanococcus jannaschii Length = 460 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 28/80 (35%), Gaps = 7/80 (8%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAIT-------IESGPRCHDGTRRTVRYDI 98 F + E C C C A+CP + + Y I Sbjct: 31 NFEVTIEKKPRYVDENICTGCGACAAVCPIEVPNEFDLGLGTRKAIYVPFAQAVPLVYTI 90 Query: 99 DMIKCIYCGLCQEACPVDAI 118 DM CI CGLC++AC AI Sbjct: 91 DMDHCIRCGLCEKACGPGAI 110 Score = 41.2 bits (95), Expect = 0.043, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 7/71 (9%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 + R E+ C C++C +CP AIT + ++ + C CG C Sbjct: 373 RIEMIRAVVDEDVCGGCQVCAKMCPYNAITYVEKD-------GHLVAQVNDVACKGCGSC 425 Query: 110 QEACPVDAIVE 120 ACP A+ Sbjct: 426 AGACPSGAMQL 436 >gi|145219605|ref|YP_001130314.1| electron transport complex, RnfABCDGE type, C subunit [Prosthecochloris vibrioformis DSM 265] gi|145205769|gb|ABP36812.1| electron transport complex, RnfABCDGE type, C subunit [Chlorobium phaeovibrioides DSM 265] Length = 441 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 26/89 (29%), Gaps = 3/89 (3%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 +++ T+ P K ++ F L CI C C CP G Sbjct: 331 MMGRSQFTLEVPITKTTSGILFINNAGLESSRE--RTCIRCGKCIDACPQGLEPWLLG-N 387 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 R + C CG C CP Sbjct: 388 EAQFRRLDEAELYGLANCTECGSCTFVCP 416 >gi|332704000|ref|ZP_08424088.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfovibrio africanus str. Walvis Bay] gi|332554149|gb|EGJ51193.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfovibrio africanus str. Walvis Bay] Length = 659 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 23/64 (35%), Gaps = 7/64 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +RCI C C A CP AI R + + C CG+C CP AI Sbjct: 580 DIKRCIGCGKCIATCPFGAIEAID-------FRGQPKAQVIETVCQGCGICTATCPQGAI 632 Query: 119 VEGP 122 Sbjct: 633 QLQH 636 Score = 40.1 bits (92), Expect = 0.094, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 25/87 (28%), Gaps = 13/87 (14%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGP--------RCHDGTRRTVRYDIDMIKCI---- 104 E C C LC CP++ + + ID C Sbjct: 236 YVNWEACTGCGLCMEKCPSKKAKDDFNEQIGTTTAINIPSPQAIPKKAKIDPEFCRQFTK 295 Query: 105 -YCGLCQEACPVDAIVEGPNFEFATET 130 CG+C + CP AI E E Sbjct: 296 GKCGVCAKICPSGAIEYDQQDEVVGEK 322 >gi|301311164|ref|ZP_07217092.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides sp. 20_3] gi|300830738|gb|EFK61380.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides sp. 20_3] Length = 310 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 29/97 (29%), Gaps = 16/97 (16%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P + + CI C C CP +AIT+ + Sbjct: 193 PKSRRIYVSCVNKDKGAAARKACANACIGCGKCAKECPFEAITVTNN-----------VA 241 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 ID KC C C CP AI E R+E Sbjct: 242 YIDYTKCRMCRKCVAVCPTGAI-----HELNFPPRKE 273 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 28/81 (34%), Gaps = 8/81 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCH--------DGTRRTVRYDIDMIKCIYCGLCQ 110 EE+C +C C CP I + + + CI CG C Sbjct: 167 DEEKCTSCGACVKACPKSIIELRKKGPKSRRIYVSCVNKDKGAAARKACANACIGCGKCA 226 Query: 111 EACPVDAIVEGPNFEFATETR 131 + CP +AI N + T+ Sbjct: 227 KECPFEAITVTNNVAYIDYTK 247 Score = 35.5 bits (80), Expect = 2.6, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 22/65 (33%), Gaps = 9/65 (13%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 N C+ C C AI I T ++D KC CG C +ACP Sbjct: 135 NCSFGCLGYGDCVNACAFDAIHINPT---------TGIAEVDEEKCTSCGACVKACPKSI 185 Query: 118 IVEGP 122 I Sbjct: 186 IELRK 190 >gi|300245743|gb|ADJ93929.1| putative aromatic-degrading BamH [Clostridia bacterium enrichment culture clone BF] Length = 595 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 10/68 (14%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 L + E C C C +CP AI + ++ID KC C C Sbjct: 536 KKLSKIRIVPEECKKCGACAKVCPVGAIKGKPKE----------LHEIDPEKCTKCEACI 585 Query: 111 EACPVDAI 118 +AC AI Sbjct: 586 KACHFKAI 593 Score = 40.9 bits (94), Expect = 0.065, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 17/44 (38%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + ++ + I +C CG C + CPV AI P Sbjct: 524 HVRDKVCPAGVCKKLSKIRIVPEECKKCGACAKVCPVGAIKGKP 567 >gi|268679364|ref|YP_003303795.1| ferredoxin-type protein, NapH/MauN family [Sulfurospirillum deleyianum DSM 6946] gi|268617395|gb|ACZ11760.1| ferredoxin-type protein, NapH/MauN family [Sulfurospirillum deleyianum DSM 6946] Length = 279 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 26/73 (35%), Gaps = 9/73 (12%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G +L R + C +C C+ +CP + G I +C CG Sbjct: 201 GRLSLVRVKHDHTVCTSCMKCKEVCP---------EKHVLGIVSKSSGTIVSGECTNCGR 251 Query: 109 CQEACPVDAIVEG 121 C E C A+ G Sbjct: 252 CVEVCESHALFFG 264 >gi|254439390|ref|ZP_05052884.1| dihydroorotate dehydrogenase family protein [Octadecabacter antarcticus 307] gi|198254836|gb|EDY79150.1| dihydroorotate dehydrogenase family protein [Octadecabacter antarcticus 307] Length = 434 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 8/95 (8%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI+C C A C E + + + +C+ Sbjct: 330 QYLNLNYIAKAVINQDDCISCGRCYAAC-------EDTSHQAIAMSQDRTFTVIDEECVA 382 Query: 106 CGLCQEACPV-DAIVEGPNFEFATETRQELYYDKE 139 C LC + CPV D I T+ R KE Sbjct: 383 CNLCVDVCPVEDCITMVALAPGTTDPRTGKVVQKE 417 >gi|152981034|ref|YP_001352093.1| formate dehydrogenase alpha subunit [Janthinobacterium sp. Marseille] gi|151281111|gb|ABR89521.1| formate dehydrogenase alpha subunit [Janthinobacterium sp. Marseille] Length = 946 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 5/78 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID----MIKCIYCGLCQEACP 114 + CI C C C + + G + +D+D C+ CG C +ACP Sbjct: 152 NLDACIQCTRCVRACRDE-QENDVIGLAFRGDHAKIVFDMDDPMGASTCVACGECVQACP 210 Query: 115 VDAIVEGPNFEFATETRQ 132 A++ + +Q Sbjct: 211 TGALMPARDVALNVPDKQ 228 >gi|86160580|ref|YP_467365.1| CoB--CoM heterodisulfide reductase subunit A [Anaeromyxobacter dehalogenans 2CP-C] gi|85777091|gb|ABC83928.1| CoB--CoM heterodisulfide reductase subunit A [Anaeromyxobacter dehalogenans 2CP-C] Length = 632 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 21/59 (35%), Gaps = 9/59 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 C C +C A CP A+ I+ + + C CG C ACP A Sbjct: 561 DAALCGGCGMCVAACPFGAMVIDGAD---------GKARVLAGDCRGCGTCAAACPTGA 610 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 11/67 (16%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRY----------DIDMIKCI-YCGLCQEACP 114 C C +C A + P R+ + +D C+ C C ACP Sbjct: 244 CLGCAEVCGAACPVELADPPGGGPARKAIHLPYPGCLPHAAVVDRAACLPGCDACAGACP 303 Query: 115 VDAIVEG 121 A+ G Sbjct: 304 FGAVRLG 310 Score = 34.3 bits (77), Expect = 5.8, Method: Composition-based stats. Identities = 9/22 (40%), Positives = 13/22 (59%) Query: 97 DIDMIKCIYCGLCQEACPVDAI 118 ++D C CG+C ACP A+ Sbjct: 559 EVDAALCGGCGMCVAACPFGAM 580 >gi|20089546|ref|NP_615621.1| Na+-transporting NADH:ubiquinone oxidoreductase, subunit 1 [Methanosarcina acetivorans C2A] gi|19914459|gb|AAM04101.1| Na+-transporting NADH:ubiquinone oxidoreductase, subunit 1 [Methanosarcina acetivorans C2A] Length = 447 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 20/58 (34%), Gaps = 1/58 (1%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + CI C C +CP + G R + + CI CG C CP Sbjct: 363 RDEATVCIHCARCVDVCPMNLLPGRIAAMADMGMFDRCR-EYFALNCIECGECAVVCP 419 >gi|328953795|ref|YP_004371129.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfobacca acetoxidans DSM 11109] gi|328454119|gb|AEB09948.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfobacca acetoxidans DSM 11109] Length = 281 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 37/85 (43%), Gaps = 12/85 (14%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 FRGE+ + P+ RC+ C+ C C +A+T + + + ID + Sbjct: 203 VPVMFRGEYIAQVDPD---RCVGCRECLRFCQFEAMTYSTADQ---------KTVIDPRR 250 Query: 103 CIYCGLCQEACPVDAIVEGPNFEFA 127 C CG+C+ CP +AI A Sbjct: 251 CYGCGVCRSGCPEEAIQLVDRISVA 275 >gi|294340543|emb|CAZ88928.1| Putative Electron transport complex, RnfABCDGE type, B subunit (RnfB) [Thiomonas sp. 3As] Length = 210 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 31/109 (28%), Gaps = 18/109 (16%) Query: 24 LRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG 83 L + + T P R CI C LC CP AI S Sbjct: 57 LAHLLQRPATALDPSCGTEGPRE--------RAVIDPALCIGCTLCIQACPVDAIAGVSK 108 Query: 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 + + C C LC CPVD I + A TR Sbjct: 109 ----------RMHTVIEDWCTGCALCLPPCPVDCIRMEALTDPALATRS 147 >gi|223984910|ref|ZP_03635015.1| hypothetical protein HOLDEFILI_02314 [Holdemania filiformis DSM 12042] gi|223963121|gb|EEF67528.1| hypothetical protein HOLDEFILI_02314 [Holdemania filiformis DSM 12042] Length = 854 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 25/102 (24%), Positives = 33/102 (32%), Gaps = 14/102 (13%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC--EAICPAQAIT 79 + L + FK P + G R +C C++C E CP A Sbjct: 675 IVLPHKFKLAV-GGCPNNCVKPNLNDLGIVGQRIPEINMAKCRGCQVCQIEKNCPIGAAK 733 Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 + G ID C +CG C CP AI E Sbjct: 734 LIDGK-----------LQIDADLCNHCGRCVSKCPFKAIEES 764 >gi|193212229|ref|YP_001998182.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [Chlorobaculum parvum NCIB 8327] gi|193085706|gb|ACF10982.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Chlorobaculum parvum NCIB 8327] Length = 1178 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 21/73 (28%), Gaps = 16/73 (21%) Query: 58 NGEERCIACKLCEAICPAQAITIESGP----------------RCHDGTRRTVRYDIDMI 101 E CI C C +CP AI I+ + + + Sbjct: 682 WEPELCIECGKCSMVCPHAAIRIKVYEPEHLENAPATFKSLEAKAKNWEGMRYTVQVAPE 741 Query: 102 KCIYCGLCQEACP 114 C C LC CP Sbjct: 742 DCTGCQLCVNVCP 754 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 17/50 (34%), Gaps = 3/50 (6%) Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWE 149 CI CG C CP AI +E E + + L WE Sbjct: 684 PELCIECGKCSMVCPHAAIRI-KVYEP--EHLENAPATFKSLEAKAKNWE 730 >gi|167757158|ref|ZP_02429285.1| hypothetical protein CLORAM_02708 [Clostridium ramosum DSM 1402] gi|237735753|ref|ZP_04566234.1| 4Fe-4S ferredoxin [Mollicutes bacterium D7] gi|167703333|gb|EDS17912.1| hypothetical protein CLORAM_02708 [Clostridium ramosum DSM 1402] gi|229381498|gb|EEO31589.1| 4Fe-4S ferredoxin [Coprobacillus sp. D7] Length = 260 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 37/95 (38%), Gaps = 21/95 (22%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 YP+++G T +FR P E+C C +C +CP AI IE + Sbjct: 169 KYPYKEGGTGGKFR--------PETNEQCSGCGVCVNMCPTNAIDIEDCKTIN------- 213 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 CI C C CPV A N E+ T Sbjct: 214 ------NDCIACFRCIRICPVHAKSMNNNQEYQTF 242 >gi|154495355|ref|ZP_02034360.1| hypothetical protein PARMER_04412 [Parabacteroides merdae ATCC 43184] gi|154085279|gb|EDN84324.1| hypothetical protein PARMER_04412 [Parabacteroides merdae ATCC 43184] Length = 601 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 5/64 (7%) Query: 59 GEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 +CI C+ CE +C A+T + + R DI C YCG C CP Sbjct: 153 NMNKCIMCRRCETMCNNIQTVGALTAVNRGFNAAVSTAFER-DIAGSTCSYCGQCVSVCP 211 Query: 115 VDAI 118 V+A+ Sbjct: 212 VNAL 215 >gi|14717798|gb|AAB18330.2| formate dehydrogenase alpha subunit [Moorella thermoacetica] Length = 893 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 16/102 (15%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP------AQAITIESGPRCHDGT 90 P ++ +R Y +CI C C C + + T Sbjct: 124 PVKREELPVLKENPFIVRDY----NKCIVCGRCVRACQEVQVQRVVDLVGKGSAARVGAT 179 Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVE------GPNFEF 126 + ++ C++CG C + CPV A+ E G +EF Sbjct: 180 KAGAEVSLEEGGCVFCGNCVQVCPVGALTEKAGLGQGREWEF 221 Score = 35.5 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 18/81 (22%), Gaps = 8/81 (9%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI-- 98 R E C+ C+ +R + Sbjct: 76 TPVIEEMRKGIIEMLLSLHPEDCLTCEKAGNCQLQDCAYTYGVKHGELPVKREELPVLKE 135 Query: 99 ------DMIKCIYCGLCQEAC 113 D KCI CG C AC Sbjct: 136 NPFIVRDYNKCIVCGRCVRAC 156 Score = 33.9 bits (76), Expect = 6.8, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 4/46 (8%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 C+ C C +CP A+T + G R + C YCG+ Sbjct: 192 CVFCGNCVQVCPVGALT----EKAGLGQGREWEFKKVRSICSYCGV 233 >gi|55377023|ref|YP_134873.1| ferredoxin [Haloarcula marismortui ATCC 43049] gi|55229748|gb|AAV45167.1| ferredoxin [Haloarcula marismortui ATCC 43049] Length = 109 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 24/69 (34%), Gaps = 2/69 (2%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + CIA C CP P + + +CI C LC + C Sbjct: 37 THVAVDFDICIADGACLEDCPVDVFEWVDTPDHPESEIKADPA--HEDQCIDCMLCVDVC 94 Query: 114 PVDAIVEGP 122 PVDAI P Sbjct: 95 PVDAIDVDP 103 >gi|73540325|ref|YP_294845.1| formate dehydrogenase, alpha subunit [Ralstonia eutropha JMP134] gi|72117738|gb|AAZ60001.1| Formate dehydrogenase, alpha subunit [Ralstonia eutropha JMP134] Length = 956 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 21/70 (30%), Gaps = 3/70 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T SG C+ CG C + Sbjct: 161 YFTYDPSKCIVCNRCVRACEETQGTFALTISGRGFDSRVSPGTSQSFMESDCVSCGACVQ 220 Query: 112 ACPVDAIVEG 121 ACP + E Sbjct: 221 ACPTATLTET 230 >gi|51246475|ref|YP_066359.1| glutamate synthase, alpha subunit [Desulfotalea psychrophila LSv54] gi|50877512|emb|CAG37352.1| related to glutamate synthase, alpha subunit [Desulfotalea psychrophila LSv54] Length = 546 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 27/118 (22%), Positives = 43/118 (36%), Gaps = 22/118 (18%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK----------- 102 + E+RC C C ICP AI++ + + + Sbjct: 21 WIIEHREDRCTLCGKCTTICPKGAISLSYRRQRLPKLDVFSKKRSSDYRTFTGIRQSTDL 80 Query: 103 ---CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIV 157 CI CG+C CP +AI N E R + +++ NG+ ++ RNI Sbjct: 81 AHACIGCGMCAMVCPNEAITPVANDN---EHRSQFFHN-----INGEPYKRGGRRNIS 130 >gi|148265505|ref|YP_001232211.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [Geobacter uraniireducens Rf4] gi|146399005|gb|ABQ27638.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Geobacter uraniireducens Rf4] Length = 1186 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 21/98 (21%), Positives = 33/98 (33%), Gaps = 24/98 (24%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP-------- 84 T FEK + + E+ CI C +C +CP AI +++ P Sbjct: 670 TATSQFEKRNIAVDIPVW--------DEKLCIQCAICSFVCPHAAIRVKAYPDECLKGAP 721 Query: 85 --------RCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 R + + + + C CG C CP Sbjct: 722 ATFKSTDSRIAEVKEMKITFQVAPEDCTGCGACAHNCP 759 >gi|332981470|ref|YP_004462911.1| methyl-viologen-reducing hydrogenase subunit delta [Mahella australiensis 50-1 BON] gi|332699148|gb|AEE96089.1| methyl-viologen-reducing hydrogenase delta subunit [Mahella australiensis 50-1 BON] Length = 499 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 9/62 (14%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 +C C C CP A+ + YD+ C CG+C CP +AI Sbjct: 310 KCSLCLTCLRFCPHGALHVSDDMPS------MAVYDMA---CQGCGICGAVCPAEAINLA 360 Query: 122 PN 123 N Sbjct: 361 DN 362 >gi|312880247|ref|ZP_07740047.1| protein of unknown function DUF362 [Aminomonas paucivorans DSM 12260] gi|310783538|gb|EFQ23936.1| protein of unknown function DUF362 [Aminomonas paucivorans DSM 12260] Length = 387 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 13/81 (16%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 F ALR C+ C++C+ +CP A+ + GP Sbjct: 304 FIPTPLRGFAHRWVALRP-QLERSACVRCRVCQEVCPVDALAWDDGPVVD---------- 352 Query: 98 IDMIKCIYCGLCQEACPVDAI 118 +C+ C C E CP A+ Sbjct: 353 --SNRCVQCLCCHEMCPTGAM 371 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 18/38 (47%) Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 R +R ++ C+ C +CQE CPVDA+ Sbjct: 310 RGFAHRWVALRPQLERSACVRCRVCQEVCPVDALAWDD 347 >gi|303243539|ref|ZP_07329881.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanothermococcus okinawensis IH1] gi|302486100|gb|EFL49022.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanothermococcus okinawensis IH1] Length = 456 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 28/80 (35%), Gaps = 7/80 (8%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAIT-------IESGPRCHDGTRRTVRYDI 98 F + E+ C C C CP + + Y I Sbjct: 27 NFEVTVEKKPRYVDEDTCTGCGACAGACPIEVPNGFDLGLGTRKAIYVPFAQAVPLVYTI 86 Query: 99 DMIKCIYCGLCQEACPVDAI 118 DM CI+CGLC++AC AI Sbjct: 87 DMEHCIHCGLCEKACGPGAI 106 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 7/70 (10%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + R E C C++C +CP AI+ + + +D + C CG C Sbjct: 370 IEMIRACVDENVCGGCEICGKMCPYHAISYKE-------IDGHLIAQVDDVACKGCGACA 422 Query: 111 EACPVDAIVE 120 ACP A+ Sbjct: 423 GACPSGAMQL 432 >gi|222056361|ref|YP_002538723.1| glutamate synthase (NADPH) [Geobacter sp. FRC-32] gi|221565650|gb|ACM21622.1| Glutamate synthase (NADPH) [Geobacter sp. FRC-32] Length = 509 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 19/64 (29%), Gaps = 9/64 (14%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 +CI CK+C C + CI C C CP AI Sbjct: 21 KCIRCKVCVRQCSYGVHSYVEQDNVLIEDN---------TSCIGCRRCSALCPTGAITIR 71 Query: 122 PNFE 125 N E Sbjct: 72 SNEE 75 >gi|163795953|ref|ZP_02189916.1| putative glutamate synthase small subunit [alpha proteobacterium BAL199] gi|159178708|gb|EDP63246.1| putative glutamate synthase small subunit [alpha proteobacterium BAL199] Length = 603 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 32/107 (29%), Gaps = 20/107 (18%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ--------------------A 77 + + R + + + CI C C ICP A Sbjct: 484 DVQLAWKEAQRCLNCDIQTVFTPQLCIECDACVDICPMDSISFTDNGDESELRGRLSAPA 543 Query: 78 ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 + + DG + D C++CGLC E CP A F Sbjct: 544 LNLTQDIYVADGLKTGRVMAKDEDVCLHCGLCAERCPTGAWDMRKYF 590 >gi|187477321|ref|YP_785345.1| NAD-dependent formate dehydrogenase subunit alpha [Bordetella avium 197N] gi|115421907|emb|CAJ48427.1| NAD-dependent formate dehydrogenase alpha subunit [Bordetella avium 197N] Length = 953 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 21/69 (30%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T +G C+ CG C + Sbjct: 162 YFTYDPSKCIVCNRCVRACEETQGTFALTIAGKGFESRVSPGQSQSFMESDCVSCGACVQ 221 Query: 112 ACPVDAIVE 120 ACP + E Sbjct: 222 ACPTATLQE 230 >gi|330836325|ref|YP_004410966.1| hydrogenase, Fe-only [Spirochaeta coccoides DSM 17374] gi|329748228|gb|AEC01584.1| hydrogenase, Fe-only [Spirochaeta coccoides DSM 17374] Length = 577 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 25/93 (26%), Gaps = 6/93 (6%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR-- 91 + P+E+ +CI C C +C Sbjct: 119 LELPYERRPAPT---KWDHSFPLFRDAAKCIKCMRCIQVCDKIQGLNIWDLVGTGSRTTV 175 Query: 92 -RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + I C CG C CPV A+ E + Sbjct: 176 DVSFSRKITDADCALCGQCITHCPVGALRERDD 208 >gi|330830241|ref|YP_004393193.1| RnfABCDGE type electron transport complex subunit C [Aeromonas veronii B565] gi|328805377|gb|AEB50576.1| Electron transport complex, RnfABCDGE type, C subunit [Aeromonas veronii B565] Length = 903 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 10/74 (13%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACPVD 116 + CI C C A P+ R YD ++++ CI CG C CP Sbjct: 375 QPCIRCSACA-----DACPATLLPQELYWYSRAKEYDKAEKLNLMDCIECGACAWVCP-S 428 Query: 117 AIVEGPNFEFATET 130 I ++ A + Sbjct: 429 EIPLVQYYKIAKDD 442 >gi|319957481|ref|YP_004168744.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Nitratifractor salsuginis DSM 16511] gi|319419885|gb|ADV46995.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Nitratifractor salsuginis DSM 16511] Length = 149 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 27/84 (32%), Gaps = 14/84 (16%) Query: 37 PFEKGST----SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 P E+ + + + + CI C+ C C P +R Sbjct: 47 PEERPYSDFSSYTATVASWRVIKPVYNRDICIDCQNCWVWC----------PDTSIISRD 96 Query: 93 TVRYDIDMIKCIYCGLCQEACPVD 116 ID C CG+C E CP + Sbjct: 97 KQMLGIDYDHCKGCGVCVEVCPTN 120 >gi|321250193|ref|XP_003191722.1| iron-sulfur protein required for ribosome biogenesis and translation initiation; Rli1p [Cryptococcus gattii WM276] gi|317458189|gb|ADV19935.1| Iron-sulfur protein required for ribosome biogenesis and translation initiation, putative; Rli1p [Cryptococcus gattii WM276] Length = 603 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 25/68 (36%), Gaps = 3/68 (4%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP---N 123 K C C ++ G C + + I CI CG+C + CP +AI N Sbjct: 19 KRCRQECKRSCPVVKMGKLCIEVNPSDKKAFISEELCIGCGICVKKCPFEAIQILNLPTN 78 Query: 124 FEFATETR 131 E R Sbjct: 79 LESHVTHR 86 >gi|313673825|ref|YP_004051936.1| NADH:ubiquinone oxidoreductase, subunit g, iron-sulfur binding protein [Calditerrivibrio nitroreducens DSM 19672] gi|312940581|gb|ADR19773.1| NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding protein [Calditerrivibrio nitroreducens DSM 19672] Length = 737 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 29/85 (34%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 E + + + C+ C+ C IC V Sbjct: 120 EESVKSQKPNKPIFDWNMIIHDANLCVLCERCVKICHEITGNSALKIDNRGFNNLIVPSK 179 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 D + C +CGLC + CPV A+++ P Sbjct: 180 GDTLNCDFCGLCVDYCPVGALLDKP 204 >gi|302344621|ref|YP_003809150.1| pyruvate ferredoxin/flavodoxin oxidoreductase, subunit delta [Desulfarculus baarsii DSM 2075] gi|301641234|gb|ADK86556.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Desulfarculus baarsii DSM 2075] Length = 109 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 8/72 (11%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 RR E+CI C LC +CP A + + + C CG+C + C Sbjct: 36 RRPVTDREKCIKCGLCYILCPDMAFSPDPNAEGYYNWDGY--------YCKGCGICVKEC 87 Query: 114 PVDAIVEGPNFE 125 P DAI E Sbjct: 88 PKDAISWQEEKE 99 >gi|294101032|ref|YP_003552890.1| Cobyrinic acid ac-diamide synthase [Aminobacterium colombiense DSM 12261] gi|293616012|gb|ADE56166.1| Cobyrinic acid ac-diamide synthase [Aminobacterium colombiense DSM 12261] Length = 281 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 10/61 (16%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RC C +C C A+ ++M C CG+C+ CP AI + Sbjct: 66 RCKGCGVCADNCAFGALNQFGTHAPV----------VNMQLCHGCGVCELVCPQKAIKDS 115 Query: 122 P 122 Sbjct: 116 K 116 Score = 34.3 bits (77), Expect = 5.3, Method: Composition-based stats. Identities = 8/36 (22%), Positives = 13/36 (36%) Query: 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 V I+ +C CG+C + C A+ Sbjct: 48 KNPKKENVYKVVPQIEAARCKGCGVCADNCAFGALN 83 >gi|294496342|ref|YP_003542835.1| electron transport complex, RnfABCDGE type, C subunit [Methanohalophilus mahii DSM 5219] gi|292667341|gb|ADE37190.1| electron transport complex, RnfABCDGE type, C subunit [Methanohalophilus mahii DSM 5219] Length = 451 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 1/58 (1%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + + CI C C +CP I + G R + + CI CG C CP Sbjct: 355 KDISKDCIHCARCVDVCPVDLIPNRIAALSNQG-RFDECRQMHIENCIECGRCSSVCP 411 Score = 34.7 bits (78), Expect = 4.5, Method: Composition-based stats. Identities = 9/18 (50%), Positives = 11/18 (61%) Query: 102 KCIYCGLCQEACPVDAIV 119 CI+C C + CPVD I Sbjct: 360 DCIHCARCVDVCPVDLIP 377 >gi|239905180|ref|YP_002951919.1| quinone-interacting membrane-bound oxidoreductase complex subunit B [Desulfovibrio magneticus RS-1] gi|239795044|dbj|BAH74033.1| quinone-interacting membrane-bound oxidoreductase complex subunit B [Desulfovibrio magneticus RS-1] Length = 763 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 21/70 (30%), Gaps = 10/70 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L RC CK C CP A+ + + +C CG C A Sbjct: 546 LSYPVFNFVRCTQCKRCTEECPFGALDDDEKGTPKP----------NPTRCRRCGTCMGA 595 Query: 113 CPVDAIVEGP 122 CP I Sbjct: 596 CPERVISFDN 605 >gi|254477098|ref|ZP_05090484.1| 4Fe-4S binding domain protein [Ruegeria sp. R11] gi|214031341|gb|EEB72176.1| 4Fe-4S binding domain protein [Ruegeria sp. R11] Length = 390 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 29/87 (33%), Gaps = 15/87 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RC CK C ICP QA+ +E + C+ CGLC C DA+ Sbjct: 222 DATRCEHCKACTWICPTQALKLEDADVG---------LVLAEPDCVQCGLCVSICESDAL 272 Query: 119 VEGPNFEFATETRQELYYDKERLLNNG 145 P ++L G Sbjct: 273 SLSPRLRLVGAD------TPQQLEEGG 293 >gi|153872669|ref|ZP_02001494.1| Electron transport complex protein rnfC [Beggiatoa sp. PS] gi|152070866|gb|EDN68507.1| Electron transport complex protein rnfC [Beggiatoa sp. PS] Length = 446 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 29/104 (27%), Gaps = 6/104 (5%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG-----EERCIACKLCE 70 F G R + P L E CI C C Sbjct: 324 FCGGLKETTRSVIMGGPMMGMPIASLDVPILKGSSGILAFTDEETGKPKEYSCIHCGRCV 383 Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 CP + R R T D +++ C+ CG C +CP Sbjct: 384 EACPHF-LNPSRLARLSKKRRYTEMTDYNLMDCVECGACTFSCP 426 >gi|121535367|ref|ZP_01667179.1| Glutamate synthase (NADPH) [Thermosinus carboxydivorans Nor1] gi|121306059|gb|EAX46989.1| Glutamate synthase (NADPH) [Thermosinus carboxydivorans Nor1] Length = 498 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 21/66 (31%), Gaps = 12/66 (18%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + +E C+ C C C A+ E C+ C C CP +A Sbjct: 11 HIDETCVRCGRCARECSFGALKFEGRVIADHKN------------CVACHRCVTTCPAEA 58 Query: 118 IVEGPN 123 I N Sbjct: 59 ITITKN 64 >gi|119944508|ref|YP_942188.1| electron transport complex, RnfABCDGE type, B subunit [Psychromonas ingrahamii 37] gi|119863112|gb|ABM02589.1| electron transport complex, RnfABCDGE type, B subunit [Psychromonas ingrahamii 37] Length = 184 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 10/63 (15%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C CP AI + + + +C C LC E CP D I Sbjct: 111 DECIGCTKCIQACPVDAILGAT----------RQMHTVITDECTGCELCVEPCPTDCIDM 160 Query: 121 GPN 123 P Sbjct: 161 LPI 163 Score = 35.5 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 12/21 (57%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 I +CI C C +ACPVDAI Sbjct: 108 IREDECIGCTKCIQACPVDAI 128 >gi|89055203|ref|YP_510654.1| dihydropyrimidine dehydrogenase [Jannaschia sp. CCS1] gi|88864752|gb|ABD55629.1| dihydroorotate oxidase B, catalytic subunit / dihydrouracil dehydrogenase (NAD+) / dihydropyrimidine dehydrogenase (NADP+) [Jannaschia sp. CCS1] Length = 434 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 8/76 (10%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI C C A C E +++ +C+ Sbjct: 329 QYLNLNYVAKAQINQDDCIKCGRCYAAC-------EDTSHQAISMSADRVFEVIDAECVA 381 Query: 106 CGLCQEACPV-DAIVE 120 C LC CPV + I Sbjct: 382 CNLCVNVCPVENCITM 397 >gi|3724145|emb|CAA11235.1| NAD-dependent formate dehydrogenase alpha subunit [Ralstonia eutropha H16] Length = 959 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 21/70 (30%), Gaps = 3/70 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T SG C+ CG C + Sbjct: 165 YFTYDPSKCIVCNRCVRACEETQGTFALTISGRGFDSRVSPGTSQSFMESDCVSCGACVQ 224 Query: 112 ACPVDAIVEG 121 ACP + E Sbjct: 225 ACPTATLTET 234 >gi|27366363|ref|NP_761891.1| electron transport complex protein RnfC [Vibrio vulnificus CMCP6] gi|27362564|gb|AAO11418.1| Electron transport complex protein rnfC [Vibrio vulnificus CMCP6] Length = 919 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 20/57 (35%), Gaps = 9/57 (15%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI----KCIYCGLCQEACP 114 CI C C CPA + P+ + +D CI CG C CP Sbjct: 377 ECIRCGACAEACPASLL-----PQQLQWHAKAEEFDKCEELNLKDCIECGACAFVCP 428 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 19/43 (44%) Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + A ++ TR+ + ++CI CG C EACP Sbjct: 347 LPHANVPITKTSNCILAPTRKEISPAGYEMECIRCGACAEACP 389 >gi|37679374|ref|NP_933983.1| electron transport complex protein RnfC [Vibrio vulnificus YJ016] gi|37198117|dbj|BAC93954.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Vibrio vulnificus YJ016] Length = 885 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 20/57 (35%), Gaps = 9/57 (15%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI----KCIYCGLCQEACP 114 CI C C CPA + P+ + +D CI CG C CP Sbjct: 377 ECIRCGACAEACPASLL-----PQQLQWHAKAEEFDKCEELNLKDCIECGACAFVCP 428 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 19/43 (44%) Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + A ++ TR+ + ++CI CG C EACP Sbjct: 347 LPHANVPITKTSNCILAPTRKEISPAGYEMECIRCGACAEACP 389 >gi|332981823|ref|YP_004463264.1| Fe-S cluster domain-containing protein [Mahella australiensis 50-1 BON] gi|332699501|gb|AEE96442.1| Fe-S cluster domain protein [Mahella australiensis 50-1 BON] Length = 434 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 11/70 (15%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 + +E+C C C CP +AI + +G +I +CI CG Sbjct: 1 MDNNYFHSVTLNKEKCRGCTNCIKRCPTEAIRVRAGKA-----------NITAERCIDCG 49 Query: 108 LCQEACPVDA 117 C CP A Sbjct: 50 ECIRVCPYHA 59 >gi|332296990|ref|YP_004438912.1| hydrogenase, Fe-only [Treponema brennaborense DSM 12168] gi|332180093|gb|AEE15781.1| hydrogenase, Fe-only [Treponema brennaborense DSM 12168] Length = 580 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 23/67 (34%), Gaps = 3/67 (4%) Query: 59 GEERCIACKLCEAIC--PAQAITIESGPRCHDGTRRTVR-YDIDMIKCIYCGLCQEACPV 115 ++CI C C C A +E R V + CI CG C CPV Sbjct: 142 DRDKCINCGRCVEACQIMQNAWALEYSGRGDKTVIGPVAGAKLADSPCIKCGQCAAHCPV 201 Query: 116 DAIVEGP 122 AI Sbjct: 202 GAITTHN 208 >gi|325290294|ref|YP_004266475.1| hydrogenase, Fe-only [Syntrophobotulus glycolicus DSM 8271] gi|324965695|gb|ADY56474.1| hydrogenase, Fe-only [Syntrophobotulus glycolicus DSM 8271] Length = 521 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 35/109 (32%), Gaps = 24/109 (22%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +++CI C C +C + C+ CG C CP AI Sbjct: 81 DDQKCILCGQCIEVCQ----------NVQTVYGYYKLPIKNETICVNCGQCTHWCPTAAI 130 Query: 119 VEGPNFEFATETRQELYYDKERL----------LNNGDRWESEIVRNIV 157 E + T+ E D +++ + GD + I N+ Sbjct: 131 TEVDD----TQKVWEALADPDKIVIAQTAPAIRVAIGDDYGFPIGTNVE 175 >gi|323141275|ref|ZP_08076171.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT 12067] gi|322414232|gb|EFY05055.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT 12067] Length = 272 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 11/63 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + +CI C LCE CP ++ + G I+ CI CG+CQ ACPV AI Sbjct: 217 DKNQCIGCGLCEKKCPMESAELAEGKA-----------QINQHNCICCGVCQHACPVQAI 265 Query: 119 VEG 121 G Sbjct: 266 SYG 268 Score = 35.1 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 1/48 (2%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 C +CP A +R +D +CI CGLC++ CP Sbjct: 186 GFCNFLCPVGAAQGLMH-AIGCKLPFVLRMRVDKNQCIGCGLCEKKCP 232 >gi|311279509|ref|YP_003941740.1| electron transport complex, RnfABCDGE type, B subunit [Enterobacter cloacae SCF1] gi|308748704|gb|ADO48456.1| electron transport complex, RnfABCDGE type, B subunit [Enterobacter cloacae SCF1] Length = 191 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 23/76 (30%), Gaps = 10/76 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI + + + C C LC CP I Sbjct: 112 DEPNCIGCTKCIQACPVDAIVGAT----------RAMHTVVSDLCTGCNLCVAPCPTQCI 161 Query: 119 VEGPNFEFATETRQEL 134 P + +L Sbjct: 162 TLLPVKTTTETWKWDL 177 Score = 35.1 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C C +ACPVDAI Sbjct: 111 IDEPNCIGCTKCIQACPVDAI 131 >gi|291521599|emb|CBK79892.1| hydrogenases, Fe-only [Coprococcus catus GD/7] Length = 581 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 24/72 (33%), Gaps = 3/72 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT---VRYDIDMIKCIYCGLCQE 111 +CI C+ C A+C GP D+ C+ CG C Sbjct: 141 HMVRDNSKCILCRRCSAVCEKVQGIGVIGPNERGFKSYIGTAFNMDLADTSCVSCGQCIA 200 Query: 112 ACPVDAIVEGPN 123 CP A+ E N Sbjct: 201 VCPTGALHEKDN 212 >gi|163749655|ref|ZP_02156902.1| putative pyruvate oxidoreductase [Shewanella benthica KT99] gi|161330765|gb|EDQ01702.1| putative pyruvate oxidoreductase [Shewanella benthica KT99] Length = 1201 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 29/160 (18%), Positives = 49/160 (30%), Gaps = 42/160 (26%) Query: 14 KEFVGAFFLCLRYFFKA---------KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCI 64 +FV + + YP T+ + + AL+ E CI Sbjct: 638 PDFVK--QVTAKMMAGKGDLIPVSMLPVDGTYP---SGTTQWEKRDIALQIPVWEETACI 692 Query: 65 ACKLCEAICPAQAITIESGPR-----CHDGTRRTVRY-----------DIDMIKCIYCGL 108 C C +CP AI + + DG + + C C L Sbjct: 693 QCGNCSIVCPHAAIRAKFYDKSLLDTAPDGFKSHTITARGFPDTRYTLQVYAQDCTGCTL 752 Query: 109 CQEACPV------------DAIVEGPNFEFATETRQELYY 136 C +ACP+ AI P + + +++L + Sbjct: 753 CVDACPMVIQEATDTSPEIKAINMQPKGPYMEQAKKDLDF 792 >gi|154249549|ref|YP_001410374.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Fervidobacterium nodosum Rt17-B1] gi|154153485|gb|ABS60717.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Fervidobacterium nodosum Rt17-B1] Length = 116 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 30/105 (28%), Positives = 34/105 (32%), Gaps = 20/105 (19%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E G+ G + R E CI C C CP QAI +E Y Sbjct: 18 EPGNAKQYKTGTWRVMRPIYQAENCIHCMQCWLYCPDQAIVVEIVDGKPKMRGYNYYY-- 75 Query: 99 DMIKCIYCGLCQEACP--------------VDAIVEGPNFEFATE 129 C CGLC CP AIV P +FA E Sbjct: 76 ----CKGCGLCANVCPKSIDPKTKQPAPEEKRAIVMKPETDFADE 116 >gi|303243653|ref|ZP_07329994.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanothermococcus okinawensis IH1] gi|302485895|gb|EFL48818.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanothermococcus okinawensis IH1] Length = 256 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 28/83 (33%), Gaps = 11/83 (13%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + + + CI C C CP AI Sbjct: 174 CPKKVIKVQNELGEIPFNKDITVDNDTCIKCLSCVDECPVNAIKEIKEGV---------- 223 Query: 96 YDIDMIKCIYCGLCQEACPVDAI 118 +I+ CI+CG C++ CPV AI Sbjct: 224 -EINKSSCIFCGRCEKVCPVHAI 245 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 15/75 (20%) Query: 60 EERCIACKLCEAICPAQAITIESGP---------------RCHDGTRRTVRYDIDMIKCI 104 E+C+ C++C CP AI + G T R V+YDID+ CI Sbjct: 76 PEKCVKCEICAKTCPVNAIEVLEGKVYLENEGVIYKLKETEIQHRTVRLVKYDIDLENCI 135 Query: 105 YCGLCQEACPVDAIV 119 CG+CQ CP +AI Sbjct: 136 KCGVCQRYCPTNAIH 150 Score = 41.6 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 9/65 (13%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 R +RCI C LC CP AIT S + +I KC+ C +C + C Sbjct: 39 RYIYVFPKRCIRCGLCYEECPVDAITKPSIRKPA---------EIIPEKCVKCEICAKTC 89 Query: 114 PVDAI 118 PV+AI Sbjct: 90 PVNAI 94 Score = 37.8 bits (86), Expect = 0.46, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 30/68 (44%), Gaps = 3/68 (4%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 + + C+ CK CE +CP + I +++ + + CI C C + CPV Sbjct: 157 FDVNLDLCVGCKACENVCPKKVIKVQNELGEIPFNKDITVDN---DTCIKCLSCVDECPV 213 Query: 116 DAIVEGPN 123 +AI E Sbjct: 214 NAIKEIKE 221 >gi|325679919|ref|ZP_08159488.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Ruminococcus albus 8] gi|324108357|gb|EGC02604.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Ruminococcus albus 8] Length = 606 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 11/67 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +CI CK C + I+ G I+ C CGLC + CPV+AI Sbjct: 551 DSVKCINCKKCINSLGCPGLVIKDGKAA-----------IEASLCTGCGLCSQVCPVNAI 599 Query: 119 VEGPNFE 125 G N E Sbjct: 600 GGGENAE 606 >gi|255654361|ref|ZP_05399770.1| putative iron-sulfur-binding protein [Clostridium difficile QCD-23m63] gi|296452648|ref|ZP_06894341.1| iron-sulfur cluster-binding protein [Clostridium difficile NAP08] gi|296880940|ref|ZP_06904887.1| iron-sulfur cluster-binding protein [Clostridium difficile NAP07] gi|296258529|gb|EFH05431.1| iron-sulfur cluster-binding protein [Clostridium difficile NAP08] gi|296428053|gb|EFH13953.1| iron-sulfur cluster-binding protein [Clostridium difficile NAP07] Length = 357 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 23/63 (36%), Gaps = 11/63 (17%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++CI C C CP +AI+I ID C CG C CP A+ Sbjct: 195 KKCIGCGKCVNSCPTKAISIVDKKAV-----------IDSDVCYGCGECPTVCPTRAVTI 243 Query: 121 GPN 123 Sbjct: 244 QWE 246 >gi|254509395|ref|ZP_05121478.1| eleCtron transport complex, rnfabcdge type, c subunit [Vibrio parahaemolyticus 16] gi|219547669|gb|EED24711.1| eleCtron transport complex, rnfabcdge type, c subunit [Vibrio parahaemolyticus 16] Length = 840 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 9/56 (16%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI----KCIYCGLCQEACP 114 CI C C +CPA + P+ + +D CI CG C CP Sbjct: 378 CIRCGQCAEVCPASLL-----PQQLQWHAKAEEFDKCEELNLKDCIECGACAFVCP 428 Score = 38.9 bits (89), Expect = 0.23, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 18/43 (41%) Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + A ++ TR+ + D + CI CG C E CP Sbjct: 347 LPHANVPITKTANCILAPTRKEISPDHYEMACIRCGQCAEVCP 389 >gi|75907303|ref|YP_321599.1| ferredoxin (flavodoxin) oxidoreductase [Anabaena variabilis ATCC 29413] gi|75701028|gb|ABA20704.1| ferredoxin (flavodoxin) oxidoreductase [Anabaena variabilis ATCC 29413] Length = 1190 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/123 (16%), Positives = 34/123 (27%), Gaps = 30/123 (24%) Query: 58 NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRYDID--MI 101 + C+ C C +CP A D ++ I Sbjct: 694 WDTDVCVQCSKCVMVCPHAAIRAKVYQPGELENAPPTFKSVDAKDRDFANQKFTIQVAPE 753 Query: 102 KCIYCGLCQEACPV--------DAIVEGPNFEFATETRQ--ELYYDKERLLNNGDRWESE 151 C C +C CP AI + R + + + L N DR + + Sbjct: 754 DCTGCAICVNVCPAKNKSEPSLKAINMANQLPLREQERDNWDFFLN----LPNPDRRKLK 809 Query: 152 IVR 154 + + Sbjct: 810 LNQ 812 >gi|33594448|ref|NP_882092.1| ferredoxin [Bordetella pertussis Tohama I] gi|33597856|ref|NP_885499.1| ferredoxin [Bordetella parapertussis 12822] gi|33564523|emb|CAE43838.1| putative ferredoxin [Bordetella pertussis Tohama I] gi|33574285|emb|CAE38618.1| putative ferredoxin [Bordetella parapertussis] gi|332383859|gb|AEE68706.1| ferredoxin [Bordetella pertussis CS] Length = 213 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 24/70 (34%), Gaps = 10/70 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L E CI C LC CP AI + + + C C LC Sbjct: 77 LLVAVIDEAHCIGCTLCMKACPVDAIVGANK----------RMHTVLADWCTGCDLCVAP 126 Query: 113 CPVDAIVEGP 122 CPVD I P Sbjct: 127 CPVDCIDMRP 136 >gi|298675969|ref|YP_003727719.1| cobyrinic acid ac-diamide synthase [Methanohalobium evestigatum Z-7303] gi|298288957|gb|ADI74923.1| Cobyrinic acid ac-diamide synthase [Methanohalobium evestigatum Z-7303] Length = 285 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 15/82 (18%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100 F + Y N C C LC++ C AIT + ++++ Sbjct: 47 PEIMETFEFIGSKVAYVNN-NLCTECGLCKSYCRFDAITED--------------FNVNT 91 Query: 101 IKCIYCGLCQEACPVDAIVEGP 122 C CG+C+ CP DAI Sbjct: 92 FICEGCGVCEYICPEDAISLND 113 >gi|312141555|ref|YP_004008891.1| ferredoxin domain oxidoreductase [Rhodococcus equi 103S] gi|325677227|ref|ZP_08156893.1| ferredoxin-NADP(+) reductase [Rhodococcus equi ATCC 33707] gi|311890894|emb|CBH50213.1| ferredoxin domain oxidoreductase [Rhodococcus equi 103S] gi|325551924|gb|EGD21620.1| ferredoxin-NADP(+) reductase [Rhodococcus equi ATCC 33707] Length = 546 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 19/54 (35%), Gaps = 3/54 (5%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +CP I T ID CI CG C + CPVDAI Sbjct: 1 MDVCPVNCIHPTPDEPE---FATTEMLYIDPQTCIDCGACVDECPVDAIFGENE 51 >gi|294495098|ref|YP_003541591.1| CoB--CoM heterodisulfide reductase subunit A [Methanohalophilus mahii DSM 5219] gi|292666097|gb|ADE35946.1| CoB--CoM heterodisulfide reductase subunit A [Methanohalophilus mahii DSM 5219] Length = 765 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 33/88 (37%), Gaps = 19/88 (21%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C C CP AI+IE + ID + C CG C C DAI Sbjct: 583 DPDVCTLCGKCVT-CPFGAISIEDKVK------------IDPLVCNGCGYCTSLCDEDAI 629 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGD 146 +R+EL + E L GD Sbjct: 630 HIR------GYSREELVAEIEGLAQAGD 651 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 12/75 (16%) Query: 61 ERCIACKLCEAICPA------QAITIESGPR-CHDGTRRTVRYDIDMIKCI-----YCGL 108 ++C+ C C A+CP + + Y I+ CI CG Sbjct: 244 DKCVCCGKCAAVCPVVTENEFNCGSKDKKAVSIKFAQAVPQIYSINPEHCIELKGGRCGK 303 Query: 109 CQEACPVDAIVEGPN 123 C+E C VDAI Sbjct: 304 CREVCNVDAIDFSQQ 318 >gi|262089237|gb|ACY24459.1| ferredoxin [uncultured crenarchaeote 29d5] Length = 207 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 2/62 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C+A C CP P ++ + I CI+C C+ CP + Sbjct: 143 DFDICVADGACIEACPVNVYEWLDTPGHPASEKKP--FMIREKDCIFCMACENVCPPQCV 200 Query: 119 VE 120 Sbjct: 201 KI 202 >gi|251779811|ref|ZP_04822731.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243084126|gb|EES50016.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 1166 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 33/105 (31%), Gaps = 20/105 (19%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE---------------- 81 FE G+ + RG + E+CI C C +CP AI Sbjct: 665 FEAGTAAFEKRGIAVNVPEWD-SEKCIQCNQCSLVCPHAAIRPILLNEAEKNAAPANATI 723 Query: 82 -SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD--AIVEGPN 123 + + + C CG C + CP A+V P Sbjct: 724 VDAKALKSEEKLFYTMAVAPLDCSGCGNCAQICPAPGKALVMKPQ 768 >gi|288869815|ref|ZP_05976441.2| polyferredoxin [Methanobrevibacter smithii DSM 2374] gi|288860364|gb|EFC92662.1| polyferredoxin [Methanobrevibacter smithii DSM 2374] Length = 343 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 46/122 (37%), Gaps = 11/122 (9%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E P F + R++ + CI CK C CP AI +E + + Sbjct: 104 ENHLLKPEFNIIPSKRQFIIDDYLCIRCKKCMKQCPVGAIHVEDDGKVV----------V 153 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158 + KCI CG C + CPV+ F + ++EL L + E +R + Sbjct: 154 NPFKCISCGECLDVCPVNG-AMKGVFVDNIQDQKELIAQVVTFLEKYINNKEEDLRALKK 212 Query: 159 DS 160 D Sbjct: 213 DR 214 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 20/77 (25%), Positives = 25/77 (32%), Gaps = 5/77 (6%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E RFR +E CI C C + CP+ + I Sbjct: 24 EIVEKPSRFRNFP-----NVIKEYCIGCGACISSCPSPNAIKLVRDEDDETKEGVTYPII 78 Query: 99 DMIKCIYCGLCQEACPV 115 + CI CG C E CP Sbjct: 79 NKSACIRCGFCAEVCPT 95 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 5/70 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR-----YDIDMIKCIYCGLCQEAC 113 + CI C C +CP + T+E G + + ID CI C C + C Sbjct: 79 NKSACIRCGFCAEVCPTEPKTLECGENHLLKPEFNIIPSKRQFIIDDYLCIRCKKCMKQC 138 Query: 114 PVDAIVEGPN 123 PV AI + Sbjct: 139 PVGAIHVEDD 148 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 28/66 (42%), Gaps = 9/66 (13%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 +R E C C++C CP +AI+ + + + KC+ C +C ++ Sbjct: 252 IRIIDWDSETCKKCQMCIPDCPTKAISFDE---------KNDTIVRNENKCLRCSICYQS 302 Query: 113 CPVDAI 118 CP I Sbjct: 303 CPFSTI 308 >gi|217077952|ref|YP_002335670.1| electron transport complex protein RnfC [Thermosipho africanus TCF52B] gi|217037807|gb|ACJ76329.1| electron transport complex protein RnfC [Thermosipho africanus TCF52B] Length = 438 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 22/74 (29%), Gaps = 1/74 (1%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100 G ++ + CI C C +CP R I + Sbjct: 342 TPIVKGNNGITSIVPHEQKSTFCIRCSYCVNVCPMGLQPYLLDL-LGKKKRYDEAASIGL 400 Query: 101 IKCIYCGLCQEACP 114 + CI CG C CP Sbjct: 401 MDCIECGSCTYICP 414 >gi|217076634|ref|YP_002334350.1| pyruvate synthase subunit PorD [Thermosipho africanus TCF52B] gi|217036487|gb|ACJ75009.1| pyruvate synthase subunit PorD [Thermosipho africanus TCF52B] Length = 110 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 28/87 (32%), Positives = 31/87 (35%), Gaps = 15/87 (17%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G + R + E CI C +C CP QAI IE Y C CGL Sbjct: 28 GTWRVIRPVHQPENCIHCMMCWLYCPDQAIVIEVVDGKPKMKGYNYYY------CKGCGL 81 Query: 109 CQEACP---------VDAIVEGPNFEF 126 C CP AIV P EF Sbjct: 82 CANVCPKTNDNLPEEKRAIVMKPETEF 108 >gi|253699943|ref|YP_003021132.1| hypothetical protein GM21_1314 [Geobacter sp. M21] gi|251774793|gb|ACT17374.1| protein of unknown function DUF162 [Geobacter sp. M21] Length = 711 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 27/101 (26%), Positives = 33/101 (32%), Gaps = 14/101 (13%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYD------ 97 R E A +CI C C +CP S GT T +D Sbjct: 291 RTEMAQDPKFKQALQCIRCGSCLNVCPIFRLVGGHVFGSIYTGGIGTILTAWFDELKKSE 350 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 CI CG C+E CP E E R+ L +K Sbjct: 351 DIQGLCIQCGNCKEVCPGKL----DIPEMIMEIRRRLVLEK 387 >gi|86747850|ref|YP_484346.1| formate dehydrogenase, alpha subunit [Rhodopseudomonas palustris HaA2] gi|86570878|gb|ABD05435.1| formate dehydrogenase, alpha subunit [Rhodopseudomonas palustris HaA2] Length = 948 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 30/97 (30%), Gaps = 6/97 (6%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVR 95 EK P+ +CI C C C T +G ++ Sbjct: 146 EKHPNPGLDESNPYFTYDPS---KCIVCSRCVRACEEVQGTFALTIAGRGFDSVVSPGMQ 202 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 +C+ CG C +ACP + E E T R Sbjct: 203 ESFLGSECVSCGACVQACPTATLNEKSVIEIGTPERS 239 >gi|85860862|ref|YP_463064.1| electron transport complex protein, NADH-binding subunit [Syntrophus aciditrophicus SB] gi|85723953|gb|ABC78896.1| electron transport complex protein, NADH-binding subunit [Syntrophus aciditrophicus SB] Length = 439 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 20/76 (26%), Gaps = 4/76 (5%) Query: 42 STSPRFRGEHALRRYPNG---EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 + G L R CI C C CP E G G Sbjct: 347 PVTKTCSGILFLTRDEIDEQPYGPCIRCGWCVEACPMGLSPNEIGLYVEAGRAADTAP-F 405 Query: 99 DMIKCIYCGLCQEACP 114 + C CG C CP Sbjct: 406 GVFDCFECGSCAFVCP 421 >gi|50123378|ref|YP_052545.1| putative oxidoreductase Fe-S binding subunit [Pectobacterium atrosepticum SCRI1043] gi|49613904|emb|CAG77357.1| anaerobically expressed oxidoreductase [Pectobacterium atrosepticum SCRI1043] Length = 674 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 35/90 (38%), Gaps = 20/90 (22%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG------LCQEAC 113 +E+CI CK C CP A+++ + P + KC C C EAC Sbjct: 84 QEKCIGCKSCVLACPFGAMSMVTNPMDNSAIAH---------KCDLCADRPEGQACVEAC 134 Query: 114 PVDAIVEGPNFEFATETRQELYYDKERLLN 143 P A+ RQE K++L+ Sbjct: 135 PTQALQLISEHTLTAR-RQE----KQQLMA 159 Score = 40.5 bits (93), Expect = 0.088, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 13/63 (20%) Query: 63 CIACK--LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C+ C ++CP QA+ ++ + KCI C C ACP A+ Sbjct: 56 CRHCEDAPCASVCPTQAL-----------IKKDNSIQLVQEKCIGCKSCVLACPFGAMSM 104 Query: 121 GPN 123 N Sbjct: 105 VTN 107 >gi|116624102|ref|YP_826258.1| bidirectional hydrogenase complex protein HoxU [Candidatus Solibacter usitatus Ellin6076] gi|116227264|gb|ABJ85973.1| Hydrogen dehydrogenase [Candidatus Solibacter usitatus Ellin6076] Length = 241 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 8/93 (8%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--QAITIESGPRCHDG 89 T +++P+ + R+ RC+ C C +C A T + R + Sbjct: 127 THVHFPYRYPRLPVD----ASHERFVMDHNRCVLCTRCVRVCDEIEGAHTWDVMARGVEC 182 Query: 90 TRRTVRYDID--MIKCIYCGLCQEACPVDAIVE 120 T C CG C + CP A+ E Sbjct: 183 RVITDLAQPWGESESCTGCGKCVQVCPTGALSE 215 >gi|293375948|ref|ZP_06622208.1| 4Fe-4S binding domain protein [Turicibacter sanguinis PC909] gi|292645385|gb|EFF63435.1| 4Fe-4S binding domain protein [Turicibacter sanguinis PC909] Length = 428 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 2/64 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C+ C C CP AI+ + Y ++ C+ CG+C AC +I Sbjct: 294 NHETCVKCGRCLRDCPIDAIS--KVKVDEGKSTERFEYQVNEEVCLGCGVCVRACFNKSI 351 Query: 119 VEGP 122 + Sbjct: 352 MLKN 355 >gi|225175188|ref|ZP_03729184.1| electron transport complex, RnfABCDGE type, B subunit [Dethiobacter alkaliphilus AHT 1] gi|225169364|gb|EEG78162.1| electron transport complex, RnfABCDGE type, B subunit [Dethiobacter alkaliphilus AHT 1] Length = 261 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 5/70 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCIYCGLCQEAC 113 + CI+C C+ CP Q I + + H + ++ CI C +C + C Sbjct: 167 DVDACISCGKCKNTCPRQVIELVNAKTVHHVRCKSQDKGKKVKEVCERGCIACNICVKKC 226 Query: 114 PVDAIVEGPN 123 PVDAI N Sbjct: 227 PVDAIRMENN 236 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 11/60 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CIAC +C CP AI +E+ ID C CG C E CP + I Sbjct: 212 CERGCIACNICVKKCPVDAIRMENNIA-----------TIDSYICNNCGTCVEVCPRNTI 260 Score = 33.9 bits (76), Expect = 7.7, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ CE +CP AIT+ ID+ CI CG C+ CP I Sbjct: 137 CSYGCLGLGNCERVCPVDAITMSDKGLP----------IIDVDACISCGKCKNTCPRQVI 186 Query: 119 VEGP 122 Sbjct: 187 ELVN 190 >gi|225026581|ref|ZP_03715773.1| hypothetical protein EUBHAL_00831 [Eubacterium hallii DSM 3353] gi|224956073|gb|EEG37282.1| hypothetical protein EUBHAL_00831 [Eubacterium hallii DSM 3353] Length = 566 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 27/82 (32%), Gaps = 3/82 (3%) Query: 55 RYPNGEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQE 111 + +CI C C C Q + I + +D + C+ CG C+ Sbjct: 137 CIVIDKNKCILCGDCVRTCEEIQGLGILDFAYRGSKMQVMPAFDRKMAETACVGCGQCRV 196 Query: 112 ACPVDAIVEGPNFEFATETRQE 133 CP AI N E + Sbjct: 197 VCPTGAITIKHNIHPVWEALAD 218 >gi|253700341|ref|YP_003021530.1| aldo/keto reductase [Geobacter sp. M21] gi|251775191|gb|ACT17772.1| aldo/keto reductase [Geobacter sp. M21] Length = 316 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 28/81 (34%), Gaps = 11/81 (13%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 ++ + R E R+ E C C C C A+ + G Sbjct: 244 EDRADEALWGRLEGRRRKLAIMEAFCKGCGACVPACTNDALKLVEGKAV----------- 292 Query: 98 IDMIKCIYCGLCQEACPVDAI 118 +D +CI CG C ACP I Sbjct: 293 VDESQCILCGYCGAACPEFMI 313 >gi|152992174|ref|YP_001357895.1| 2-oxoglutarate-acceptor oxidoreductase subunit OorD [Sulfurovum sp. NBC37-1] gi|151424035|dbj|BAF71538.1| 2-oxoglutarate ferredoxin oxidoreductase, delta subunit [Sulfurovum sp. NBC37-1] Length = 110 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 28/88 (31%), Positives = 39/88 (44%), Gaps = 10/88 (11%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 +RC AC +C CPA ++++ P+ G +V I CI C C+ CP Sbjct: 13 WVNTDRCKACDICVDSCPAGVLSMKQEPKSVLGAMISV---IAPESCIGCNECELVCPDF 69 Query: 117 AIV--EGPNFEFATET-----RQELYYD 137 AI E F+FA T RQE + Sbjct: 70 AIYVAEKKEFKFAKLTDASKARQEAIIN 97 >gi|149244354|ref|XP_001526720.1| ATP-binding cassette sub-family E member 1 [Lodderomyces elongisporus NRRL YB-4239] gi|146449114|gb|EDK43370.1| ATP-binding cassette sub-family E member 1 [Lodderomyces elongisporus NRRL YB-4239] Length = 620 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 25/56 (44%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 K C+ C +++G C + T + I CI CG+C + CP DAI Sbjct: 32 KKCKQECRKSCPVVKTGKLCIEVTPASKIAFISETLCIGCGICVKKCPFDAITIIN 87 >gi|158521172|ref|YP_001529042.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfococcus oleovorans Hxd3] gi|158509998|gb|ABW66965.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus oleovorans Hxd3] Length = 1002 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 10/66 (15%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + + C++C C +CP + I+ + +KC+ CG+C C Sbjct: 930 IISKHNRDICMSCLACFRVCPFDSPFIDEEGHISH----------NEVKCMGCGICAGVC 979 Query: 114 PVDAIV 119 P A Sbjct: 980 PAKAFQ 985 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 19/96 (19%), Positives = 29/96 (30%), Gaps = 15/96 (15%) Query: 49 GEHALRRYPNGEERCIAC---------KLC---EAICPAQAITIESGPRCHDGTRRTVRY 96 G + C C E A+ I+ P T + + Sbjct: 45 GTMVMLDKTFPTGDCSMCMISPKMVEIGRHPNIEIHTLAEVTAIDGEPGRFTATVKLLPR 104 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 +D KC CG+C++ CP FE R+ Sbjct: 105 YVDPDKCTGCGICEKKCPKLV---TSEFEQGLTKRK 137 >gi|111222670|ref|YP_713464.1| pyruvate-flavodoxin oxidoreductase [Frankia alni ACN14a] gi|111150202|emb|CAJ61897.1| Pyruvate-flavodoxin oxidoreductase [Frankia alni ACN14a] Length = 1175 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 16/73 (21%) Query: 58 NGEERCIACKLCEAICPAQAITIES----------------GPRCHDGTRRTVRYDIDMI 101 + CI C C +CP AI + + P+ D V + Sbjct: 681 WDADLCINCGKCTIVCPHAAIRMTAFDPALLADAPATFKSRQPKDKDLAGLRVTIQVAPD 740 Query: 102 KCIYCGLCQEACP 114 C C LC + CP Sbjct: 741 DCTGCSLCVKVCP 753 Score = 38.5 bits (88), Expect = 0.29, Method: Composition-based stats. Identities = 9/21 (42%), Positives = 9/21 (42%) Query: 101 IKCIYCGLCQEACPVDAIVEG 121 CI CG C CP AI Sbjct: 684 DLCINCGKCTIVCPHAAIRMT 704 >gi|147677704|ref|YP_001211919.1| pyruvate:ferredoxin oxidoreductase [Pelotomaculum thermopropionicum SI] gi|146273801|dbj|BAF59550.1| pyruvate:ferredoxin oxidoreductase [Pelotomaculum thermopropionicum SI] Length = 1172 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 38/109 (34%), Gaps = 28/109 (25%) Query: 58 NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRYDID--MI 101 +++CI C C +C +A + Y I + Sbjct: 685 WDKDKCIQCNQCSMVCSHAAIRPFLLNEEELKKAPATFETKPAVGKQLAGLAYRIQVSPL 744 Query: 102 KCIYCGLCQEACP--VDAIVEGP---------NFEFATE-TRQELYYDK 138 C+ CG+C + CP A+ P N+++A T ++ ++K Sbjct: 745 DCMGCGVCADICPSKEKALSMQPFDSQVKEAENWDYAMTVTVKDNLWNK 793 >gi|289139|gb|AAC36818.1| nitrogen fixation protein [Nostoc sp. PCC 7120] Length = 1197 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 30/116 (25%), Gaps = 30/116 (25%) Query: 58 NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRYDID--MI 101 + C+ C C +CP A D ++ I Sbjct: 703 WDTDICVQCSKCVMVCPHAAIRAKVYQPSELENAPPTFKSVDAKDRDFANQKFTIQVAPE 762 Query: 102 KCIYCGLCQEACPV--------DAIVEGPNFEFATETRQ--ELYYDKERLLNNGDR 147 C C +C CP AI + R + + + L N DR Sbjct: 763 DCTGCAICVNVCPAKNKSEPSLKAINMANQLPLREQERDNWDFFLN----LPNPDR 814 >gi|50121881|ref|YP_051048.1| pyruvate-flavodoxin oxidoreductase [Pectobacterium atrosepticum SCRI1043] gi|49612407|emb|CAG75857.1| pyruvate-flavodoxin oxidoreductase [Pectobacterium atrosepticum SCRI1043] Length = 1170 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 24/89 (26%), Gaps = 16/89 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY 96 A++ E C C C ICP A + Sbjct: 679 IAIQVPAWQPEGCTQCNQCAFICPHAAIRPALLSQEDRSNAPVVLLSKVAQGAKAYEYHL 738 Query: 97 DIDMIKCIYCGLCQEACPVD--AIVEGPN 123 + + C CG C + CP A+ P Sbjct: 739 AVSPLDCSGCGNCVDICPSRGKALTMQPI 767 >gi|17230295|ref|NP_486843.1| pyruvate-flavodoxin dehydrogenase; nitrogen fixation protein [Nostoc sp. PCC 7120] gi|20141586|sp|Q06879|NIFJ_ANASP RecName: Full=Pyruvate-flavodoxin oxidoreductase gi|17131896|dbj|BAB74502.1| pyruvate-flavodoxin dehydrogenase; nitrogen fixation protein [Nostoc sp. PCC 7120] Length = 1199 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/116 (17%), Positives = 30/116 (25%), Gaps = 30/116 (25%) Query: 58 NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRYDID--MI 101 + C+ C C +CP A D ++ I Sbjct: 703 WDTDICVQCSKCVMVCPHAAIRAKVYQPSELENAPPTFKSVDAKDRDFANQKFTIQVAPE 762 Query: 102 KCIYCGLCQEACPV--------DAIVEGPNFEFATETRQ--ELYYDKERLLNNGDR 147 C C +C CP AI + R + + + L N DR Sbjct: 763 DCTGCAICVNVCPAKNKSEPSLKAINMANQLPLREQERDNWDFFLN----LPNPDR 814 >gi|114565952|ref|YP_753106.1| heterodisulfide reductase subunit A, selenocysteine-containing [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114336887|gb|ABI67735.1| heterodisulfide reductase, subunit A, selenocysteine-containing [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 461 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 1/63 (1%) Query: 59 GEERCIACKLCEAICPAQAITIES-GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 +C C C ICP AI++E R H G ++ C CG C AC A Sbjct: 382 DISKCSGCGFCVPICPYNAISLEPIQERGHHGPFTRNVAQVNSSLCQGCGACLPACRTLA 441 Query: 118 IVE 120 + Sbjct: 442 LNL 444 Score = 42.4 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 13/94 (13%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE--------SGPRCHDGTRRTVRYD 97 F+ + + C C C CP + + E + ++ Sbjct: 27 NFKATIKKKPKYVDWDLCTGCGTCAEKCPTKKLKDEFDLGLGLRTAIHKVYPQAVPGKFY 86 Query: 98 IDMIKCIY-----CGLCQEACPVDAIVEGPNFEF 126 ID C CG+C++ CP AI E+ Sbjct: 87 IDAQNCTKLTSGKCGVCEKLCPAKAIRFDDKEEY 120 Score = 37.0 bits (84), Expect = 0.78, Method: Composition-based stats. Identities = 12/33 (36%), Positives = 16/33 (48%) Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 + +D+ KC CG C CP +AI P E Sbjct: 376 PMVTQVDISKCSGCGFCVPICPYNAISLEPIQE 408 >gi|116751281|ref|YP_847968.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116700345|gb|ABK19533.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Syntrophobacter fumaroxidans MPOB] Length = 358 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 12/67 (17%) Query: 55 RYPNGEERCIACKLCEA-ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 ++C C +C C +AI E Y I +CI CGLC C Sbjct: 269 CAEIDPDKCSHCGICADERCQVEAIRDEGD-----------FYRIVGDRCIGCGLCATTC 317 Query: 114 PVDAIVE 120 P +AI Sbjct: 318 PEEAIAL 324 >gi|325279072|ref|YP_004251614.1| putative ferredoxin, putative iron-sulfur protein [Odoribacter splanchnicus DSM 20712] gi|324310881|gb|ADY31434.1| putative ferredoxin, putative iron-sulfur protein [Odoribacter splanchnicus DSM 20712] Length = 260 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 12/79 (15%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 KG+ + +G + E C C C ICP QAI +E G Sbjct: 169 VKGNFPYKVKGPKTPQTPETVAELCTQCGFCIGICPVQAIRLEEEIVSDAG--------- 219 Query: 99 DMIKCIYCGLCQEACPVDA 117 +CI C C + CP +A Sbjct: 220 ---RCIKCCACVKQCPNEA 235 Score = 37.4 bits (85), Expect = 0.72, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 13/40 (32%) Query: 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 P G + + C CG C CPV AI Sbjct: 174 PYKVKGPKTPQTPETVAELCTQCGFCIGICPVQAIRLEEE 213 >gi|322832828|ref|YP_004212855.1| electron transport complex, RnfABCDGE type, C subunit [Rahnella sp. Y9602] gi|321168029|gb|ADW73728.1| electron transport complex, RnfABCDGE type, C subunit [Rahnella sp. Y9602] Length = 705 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 1/58 (1%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 P EE CI C LC CPA + + G ++ CI CG C CP Sbjct: 380 PEPEEACIRCSLCAESCPAGLLPQQLY-WFSKGEEHEKARKHNLFDCIECGACAYVCP 436 >gi|257468446|ref|ZP_05632540.1| [Fe] hydrogenase [Fusobacterium ulcerans ATCC 49185] gi|317062710|ref|ZP_07927195.1| hydrogenase [Fusobacterium ulcerans ATCC 49185] gi|313688386|gb|EFS25221.1| hydrogenase [Fusobacterium ulcerans ATCC 49185] Length = 680 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 13/80 (16%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E+CI C +C IC +++ D CI CG C CP +I E Sbjct: 25 EKCIKCGMCRDICRD---------YIGVHGTYSLKDTNDTAVCINCGQCANVCPASSITE 75 Query: 121 GPNFEFATETRQELYYDKER 140 + + E +K++ Sbjct: 76 KYEY----QQIAEAVKNKDK 91 >gi|294936201|ref|XP_002781654.1| pyruvate:ferredoxin oxidoreductase/NADPH-cytochrome P450, putative [Perkinsus marinus ATCC 50983] gi|239892576|gb|EER13449.1| pyruvate:ferredoxin oxidoreductase/NADPH-cytochrome P450, putative [Perkinsus marinus ATCC 50983] Length = 1855 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 27/79 (34%), Gaps = 15/79 (18%) Query: 59 GEERCIACKLCEAICPA-------------QAITIESGPRCHDGTRRTVRYDID--MIKC 103 ++C C LC ICP A+ E+ P + Y I + C Sbjct: 722 DMDKCTQCNLCSVICPHAAIRPFLLDTVENDAVPTETRPAKGGSEVQGFHYRIQVTPLDC 781 Query: 104 IYCGLCQEACPVDAIVEGP 122 C C ACP DA+ Sbjct: 782 TGCEACSWACPDDALTMVN 800 >gi|238924008|ref|YP_002937524.1| ferredoxin [Eubacterium rectale ATCC 33656] gi|238875683|gb|ACR75390.1| ferredoxin [Eubacterium rectale ATCC 33656] gi|291524748|emb|CBK90335.1| electron transport complex, RnfABCDGE type, B subunit [Eubacterium rectale DSM 17629] gi|291528931|emb|CBK94517.1| electron transport complex, RnfABCDGE type, B subunit [Eubacterium rectale M104/1] Length = 263 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 28/83 (33%), Gaps = 11/83 (13%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P++ + CI C LCE CP+ A+ + Sbjct: 191 IPYDTKHVVKCSSKDKGKDVMKACSVGCIGCHLCEKNCPSDAVHVVDN-----------V 239 Query: 96 YDIDMIKCIYCGLCQEACPVDAI 118 ID KC CG+C E CP I Sbjct: 240 AYIDQEKCTGCGICAEKCPKKII 262 Score = 35.5 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 5/72 (6%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGP-----RCHDGTRRTVRYDIDMIKCIYCGLCQE 111 C AC C CP I + +C + + CI C LC++ Sbjct: 167 CVNPLTCKACGKCVEACPKHLIELIPYDTKHVVKCSSKDKGKDVMKACSVGCIGCHLCEK 226 Query: 112 ACPVDAIVEGPN 123 CP DA+ N Sbjct: 227 NCPSDAVHVVDN 238 >gi|262193883|ref|YP_003265092.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haliangium ochraceum DSM 14365] gi|262077230|gb|ACY13199.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haliangium ochraceum DSM 14365] Length = 591 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC-IYCGLCQEACPVDAIV 119 ERCI C C +CP + + + T D + C + C LC E CP AI Sbjct: 410 ERCIKCDQCINVCPTNVLQPSTLAQGGLEGVWTPVMDFSVGFCQLNCTLCTEVCPTGAIQ 469 Query: 120 EGP 122 + P Sbjct: 470 KTP 472 Score = 41.6 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 4/79 (5%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR-YDIDMIKCIYCGLCQEACPV 115 + E C+ C+ + P T E DGT+ T+ + CI CG+C+ CPV Sbjct: 503 WSMETPCVVCEEVCPVSPKAIGTYEEEIVRWDGTKVTLHKPYMRPELCIGCGICERECPV 562 Query: 116 D---AIVEGPNFEFATETR 131 A+ E ++ R Sbjct: 563 VDDAAVYVTAIGETRSDDR 581 >gi|198275773|ref|ZP_03208304.1| hypothetical protein BACPLE_01948 [Bacteroides plebeius DSM 17135] gi|198271402|gb|EDY95672.1| hypothetical protein BACPLE_01948 [Bacteroides plebeius DSM 17135] Length = 321 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 8/76 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCH--------DGTRRTVRYDIDMIKCIYCGLCQ 110 E +C AC C CP I I + + + + V CI CG C Sbjct: 169 DESKCTACGACSKACPRNIIEIRPKGKNNRRVYVQCVNKDKGAVARKACAAACIGCGKCV 228 Query: 111 EACPVDAIVEGPNFEF 126 + CP +AI N + Sbjct: 229 KVCPFEAITLENNLAY 244 Score = 41.6 bits (96), Expect = 0.036, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 9/60 (15%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C C + C AI + ++D KC CG C +ACP + I P Sbjct: 142 CLGCGDCVSACQFDAIHMNPETGLP---------EVDESKCTACGACSKACPRNIIEIRP 192 Score = 38.9 bits (89), Expect = 0.21, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 25/56 (44%), Gaps = 11/56 (19%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C C +CP +AIT+E+ ID KC C C+ CP AI Sbjct: 221 CIGCGKCVKVCPFEAITLENNLAY-----------IDPAKCKSCRKCEMECPQQAI 265 Score = 33.9 bits (76), Expect = 7.9, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 11/21 (52%) Query: 103 CIYCGLCQEACPVDAIVEGPN 123 C+ CG C AC DAI P Sbjct: 142 CLGCGDCVSACQFDAIHMNPE 162 >gi|218780400|ref|YP_002431718.1| molybdopterin oxidoreductase [Desulfatibacillum alkenivorans AK-01] gi|218761784|gb|ACL04250.1| NADH-quinone oxidoreductase subunit 3-like protein (Nqo3/NuoG) [Desulfatibacillum alkenivorans AK-01] Length = 878 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 19/67 (28%), Gaps = 3/67 (4%) Query: 59 GEERCIACKLCEAICPAQ-AITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115 +CI C C R ++ + K C +CG C CP Sbjct: 144 DLTKCILCGKCIRADHELVCAGAIDYNHRGFDARPATLFEQPLEKSECTFCGTCVSLCPT 203 Query: 116 DAIVEGP 122 A+ Sbjct: 204 GALTMKN 210 Score = 35.8 bits (81), Expect = 1.7, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 21/61 (34%), Gaps = 9/61 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L P + C C C ++CP A+T+++ + CG C Sbjct: 181 LFEQPLEKSECTFCGTCVSLCPTGALTMKNVRYVGTPQKEHESI---------CGFCAAG 231 Query: 113 C 113 C Sbjct: 232 C 232 >gi|153006951|ref|YP_001381276.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152030524|gb|ABS28292.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Anaeromyxobacter sp. Fw109-5] Length = 460 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 19/54 (35%), Gaps = 3/54 (5%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 C C+ C C + G V + + C CGLC EACP Sbjct: 17 CKGCRRCLEACAHGCLAPGDEIHPLSGL---VPVVLSLDACNGCGLCVEACPEP 67 >gi|145591762|ref|YP_001153764.1| putative ATPase RIL [Pyrobaculum arsenaticum DSM 13514] gi|145283530|gb|ABP51112.1| ABC transporter related [Pyrobaculum arsenaticum DSM 13514] Length = 590 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 20/58 (34%), Gaps = 6/58 (10%) Query: 66 CKL-CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C CP + +T + I CI CG+C CP +AI Sbjct: 17 CGHECVKYCPVN-----KTGKVVWIDEQTKKAVISEALCIGCGICVHKCPFEAITIVN 69 >gi|57234998|ref|YP_180962.1| iron-sulfur cluster-binding protein/coenzyme F420-reducing hydrogenase, beta subunit, putative [Dehalococcoides ethenogenes 195] gi|57225446|gb|AAW40503.1| iron-sulfur cluster-binding protein/coenzyme F420-reducing hydrogenase, beta subunit, putative [Dehalococcoides ethenogenes 195] Length = 428 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 5/66 (7%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 ++ C C +C+A+CPA AI ++ P+ + ++ C CG C +ACP I Sbjct: 16 QKLCCGCGICQAVCPAGAIKMQIDPQKGIYLPK-----LNEALCQNCGKCLKACPGTGIN 70 Query: 120 EGPNFE 125 E Sbjct: 71 LDEYTE 76 >gi|70672290|gb|AAZ06362.1| ATP-binding cassette sub-family E member 1 [Toxoplasma gondii] gi|111145377|gb|ABH06908.1| ATP-binding cassette sub-family E member 1 [Toxoplasma gondii] gi|111145379|gb|ABH06909.1| ATP-binding cassette sub-family E member 1 [Toxoplasma gondii] gi|111145381|gb|ABH06910.1| ATP-binding cassette sub-family E member 1 [Toxoplasma gondii] Length = 631 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 1/67 (1%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 LR +RC K C C + +G C + + I CI CG+C + Sbjct: 16 RLRIAIVNADRCKP-KKCRQECKRNCPVVRTGKLCIEADATSKIAFISEPLCIGCGICVK 74 Query: 112 ACPVDAI 118 CP +AI Sbjct: 75 KCPFEAI 81 >gi|78358277|ref|YP_389726.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220682|gb|ABB40031.1| Pyruvate:ferredoxin (flavodoxin) oxidoreductase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 1217 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 31/93 (33%), Gaps = 22/93 (23%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITI------------------ESGPRCHDGTRR 92 A+ E CI C C +CP AI ++ + G + Sbjct: 677 VAINVPEWLPENCIQCNQCSYVCPHAAIRPVLATEEELEGAPESFVTVDAKGKELKGLKY 736 Query: 93 TVRYDIDMIKCIYCGLCQEACPV--DAIVEGPN 123 R + C+ CG C + CP A+V P Sbjct: 737 --RMQVYSQDCLGCGSCADVCPAKNKALVMKPI 767 >gi|117923999|ref|YP_864616.1| electron transport complex, RnfABCDGE type subunit beta [Magnetococcus sp. MC-1] gi|226735422|sp|A0L5G7|RNFB_MAGSM RecName: Full=Electron transport complex protein rnfB gi|117607755|gb|ABK43210.1| electron transport complex, RnfABCDGE type, B subunit [Magnetococcus sp. MC-1] Length = 181 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 31/83 (37%), Gaps = 10/83 (12%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 SP + + EE CI C C +CP AI + + + + + Sbjct: 90 VSPAAMDDEGPKVAYIDEEACIGCTACIKVCPVDAIVGANKQ----------SHTVIVAE 139 Query: 103 CIYCGLCQEACPVDAIVEGPNFE 125 C C LC E CP D I P E Sbjct: 140 CTSCQLCLEPCPTDCITMQPVPE 162 >gi|302340161|ref|YP_003805367.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Spirochaeta smaragdinae DSM 11293] gi|301637346|gb|ADK82773.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Spirochaeta smaragdinae DSM 11293] Length = 583 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 3/68 (4%) Query: 59 GEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYD-IDMIKCIYCGLCQEACPV 115 E+C+ C C +C +E R + D ++ CI CG C CPV Sbjct: 144 NPEKCVNCGRCANVCQVMQGVWALEFIGRGENVRIAPSADDTLNDSPCIKCGQCSAHCPV 203 Query: 116 DAIVEGPN 123 AI E Sbjct: 204 GAIFEKDE 211 >gi|255731141|ref|XP_002550495.1| ATP-binding cassette sub-family E member 1 [Candida tropicalis MYA-3404] gi|240132452|gb|EER32010.1| ATP-binding cassette sub-family E member 1 [Candida tropicalis MYA-3404] Length = 622 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 25/56 (44%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 K C+ C +++G C + T + I CI CG+C + CP DAI Sbjct: 34 KKCKQECRKSCPVVKTGKLCIEVTPASKIAFISETLCIGCGICVKKCPFDAITIIN 89 >gi|212635176|ref|YP_002311701.1| electron transport complex protein RnfB [Shewanella piezotolerans WP3] gi|226735433|sp|B8CM57|RNFB_SHEPW RecName: Full=Electron transport complex protein rnfB gi|212556660|gb|ACJ29114.1| Electron transport complex, RnfABCDGE type, B subunit [Shewanella piezotolerans WP3] Length = 189 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 10/63 (15%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C CP AI + + + C C LC CPVD I Sbjct: 112 DECIGCTKCIQACPVDAILGSGK----------LMHTVITDYCTGCDLCVAPCPVDCIDM 161 Query: 121 GPN 123 P Sbjct: 162 LPI 164 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 12/21 (57%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 I +CI C C +ACPVDAI Sbjct: 109 IREDECIGCTKCIQACPVDAI 129 >gi|189460038|ref|ZP_03008823.1| hypothetical protein BACCOP_00674 [Bacteroides coprocola DSM 17136] gi|189433199|gb|EDV02184.1| hypothetical protein BACCOP_00674 [Bacteroides coprocola DSM 17136] Length = 321 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 8/76 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------DMIKCIYCGLCQ 110 E +C AC C CP I I + + CI CG C Sbjct: 169 DESKCTACGACSKACPRNIIEIRPKGKNNRRVYVQCVNKDKGAVARKACTAACIGCGKCV 228 Query: 111 EACPVDAIVEGPNFEF 126 + CP +AI N + Sbjct: 229 KVCPFEAITLENNLAY 244 Score = 40.9 bits (94), Expect = 0.056, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 9/60 (15%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C C + C AI + ++D KC CG C +ACP + I P Sbjct: 142 CLGCGDCVSACQFDAIHMNPETGLP---------EVDESKCTACGACSKACPRNIIEIRP 192 Score = 38.9 bits (89), Expect = 0.24, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 11/60 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C C +CP +AIT+E+ ID KC C C+ CP +AI Sbjct: 217 CTAACIGCGKCVKVCPFEAITLENNLAY-----------IDPAKCKSCRKCETECPQNAI 265 >gi|188996665|ref|YP_001930916.1| ferredoxin [Sulfurihydrogenibium sp. YO3AOP1] gi|188931732|gb|ACD66362.1| ferredoxin [Sulfurihydrogenibium sp. YO3AOP1] Length = 628 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 6/89 (6%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRRT 93 PFEK + ++ RC+ C C ++C ++ +I R + Sbjct: 128 TPFEKIRPEEDWESDY----LEYVSNRCVLCMKCVSVCDNINKSHSITQIERGFEILISP 183 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 +D C CGLC + CPV AI+ P Sbjct: 184 ALKPMDTSTCEMCGLCVDICPVGAILFKP 212 >gi|154505922|ref|ZP_02042660.1| hypothetical protein RUMGNA_03464 [Ruminococcus gnavus ATCC 29149] gi|153793940|gb|EDN76360.1| hypothetical protein RUMGNA_03464 [Ruminococcus gnavus ATCC 29149] Length = 1201 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 23/99 (23%), Gaps = 19/99 (19%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG + CI C C +CP A Sbjct: 699 RGIAVDIPIWQ-PDNCIQCNRCAYVCPHAVIRPIALTEEEAANAPEGMDMIDMMGMPNMK 757 Query: 94 VRYDIDMIKCIYCGLCQEACP----VDAIVEGPNFEFAT 128 + C CG C CP A+V G A Sbjct: 758 FSIAVSAYDCTGCGSCANVCPGKKGEKALVMGNMEANAG 796 >gi|158520594|ref|YP_001528464.1| cobyrinic acid ac-diamide synthase [Desulfococcus oleovorans Hxd3] gi|158509420|gb|ABW66387.1| Cobyrinic acid ac-diamide synthase [Desulfococcus oleovorans Hxd3] Length = 291 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 14/62 (22%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +RC +C C +C +AI + + +D I C CG+C + CP AI Sbjct: 64 DPDRCTSCGRCLELCRFEAIRDD--------------FVVDPIACEGCGVCVDLCPEQAI 109 Query: 119 VE 120 Sbjct: 110 DF 111 >gi|118444372|ref|YP_877570.1| MinD family protein [Clostridium novyi NT] gi|118134828|gb|ABK61872.1| MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Clostridium novyi NT] Length = 285 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 36/121 (29%), Gaps = 28/121 (23%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R + E C C CE +C AI+ I C CG Sbjct: 52 RDFFGGKIAEINENLCSGCGKCEKVCRFDAISNNK---------------ISNYSCEGCG 96 Query: 108 LCQEACPVDAIVEGPNFEFATETRQELYYDKER-------LLNNGDRWESEIVRNIVTDS 160 C CP +AI E ++Y K ++ G +++ + D+ Sbjct: 97 TCILVCPNNAITLK------EEKSADIYITKTDKGIISRAKMDIGSEGSGKLIAELREDA 150 Query: 161 P 161 Sbjct: 151 K 151 >gi|150019130|ref|YP_001311384.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149905595|gb|ABR36428.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Clostridium beijerinckii NCIMB 8052] Length = 1169 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 33/105 (31%), Gaps = 20/105 (19%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-----------------QAITI 80 FE G+ + RG + +++CI C C +CP A Sbjct: 665 FENGTAAFEKRGIAVNVPEWD-KDKCIQCNQCSMVCPHASIRPFLLTEAEKNAAPSANKA 723 Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD--AIVEGPN 123 + + + C CG C + CP A+V P Sbjct: 724 VAAKGLKTEEPLFYTMGVTPLDCSGCGNCAQVCPAPGKALVMKPQ 768 >gi|256372135|ref|YP_003109959.1| protein of unknown function DUF224 cysteine-rich region domain protein [Acidimicrobium ferrooxidans DSM 10331] gi|256008719|gb|ACU54286.1| protein of unknown function DUF224 cysteine-rich region domain protein [Acidimicrobium ferrooxidans DSM 10331] Length = 419 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 12/64 (18%) Query: 63 CIACKLCEAICPAQAITIES------------GPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 C+ C C + CP A+T G R + + +CI C C Sbjct: 19 CVHCGFCLSACPTYAVTRAEADSPRGRIWLLAEEATRSGPVVADRVRLHIDRCIGCEACV 78 Query: 111 EACP 114 ACP Sbjct: 79 PACP 82 Score = 34.3 bits (77), Expect = 5.1, Method: Composition-based stats. Identities = 8/16 (50%), Positives = 11/16 (68%) Query: 103 CIYCGLCQEACPVDAI 118 C++CG C ACP A+ Sbjct: 19 CVHCGFCLSACPTYAV 34 >gi|188585715|ref|YP_001917260.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350402|gb|ACB84672.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 1177 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 33/109 (30%), Gaps = 19/109 (17%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRC 86 +T+ RG ++CI C C ICP +A + Sbjct: 669 RTTAYEKRGIAVNIPEWQ-IDKCIQCNQCSYICPHAVIRPYLLDEEEVQRAPETFETKQA 727 Query: 87 HDGTRRTVRYDID--MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 + Y I + C CG C + CP E A E ++ Sbjct: 728 TGKDMDDLSYRIQVSPLDCTGCGNCADICPAKGKAL--IMEPAEEQIEQ 774 >gi|148642428|ref|YP_001272941.1| glutamate synthase (NADPH), subunit 2 [Methanobrevibacter smithii ATCC 35061] gi|222446074|ref|ZP_03608589.1| hypothetical protein METSMIALI_01723 [Methanobrevibacter smithii DSM 2375] gi|148551445|gb|ABQ86573.1| glutamate synthase (NADPH), subunit 2 [Methanobrevibacter smithii ATCC 35061] gi|222435639|gb|EEE42804.1| hypothetical protein METSMIALI_01723 [Methanobrevibacter smithii DSM 2375] Length = 498 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 10/64 (15%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 E+ C C C CP I G Y ++ KC+ C +C E CP Sbjct: 26 CDDRDEKICGRCFSCYNNCPHGVYEIIQGEP----------YPLNQEKCVGCRICLEMCP 75 Query: 115 VDAI 118 AI Sbjct: 76 NRAI 79 >gi|82734593|gb|ABB89703.1| trichloroethene reductive dehalogenase [Dehalococcoides sp. FMC-TCE] Length = 554 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 3/60 (5%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID---MIKCIYCGLCQEACPVD 116 E C C +C CP QAI+ E Y+ KCI C C+ CP Sbjct: 434 REFCKTCGICAEHCPTQAISHEGPRFDSPYWDNVSGYEGWHLDHHKCINCTNCESFCPFF 493 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%) Query: 103 CIYCGLCQEACPVDAI-VEGPNFE 125 C CG+C E CP AI EGP F+ Sbjct: 437 CKTCGICAEHCPTQAISHEGPRFD 460 >gi|147918955|ref|YP_687319.1| tungsten formylmethanofuran dehydrogenase, subunit G [uncultured methanogenic archaeon RC-I] gi|110622715|emb|CAJ37993.1| tungsten formylmethanofuran dehydrogenase, subunit G [uncultured methanogenic archaeon RC-I] Length = 77 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 20/66 (30%), Gaps = 4/66 (6%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRT----VRYDIDMIKCIYCGLCQEACPV 115 C C C CP A+ + ID C CG+C E CP Sbjct: 10 NRTCTGCNNCVVACPVNALELTVANPVTKKKTYNVLNGKAVVIDDEVCNGCGICLEVCPQ 69 Query: 116 DAIVEG 121 AI Sbjct: 70 RAITLT 75 Score = 33.5 bits (75), Expect = 9.1, Method: Composition-based stats. Identities = 10/25 (40%), Positives = 12/25 (48%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEG 121 DI C C C ACPV+A+ Sbjct: 7 DIQNRTCTGCNNCVVACPVNALELT 31 >gi|88603095|ref|YP_503273.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methanospirillum hungatei JF-1] gi|88188557|gb|ABD41554.1| formylmethanofuran dehydrogenase, subunit G [Methanospirillum hungatei JF-1] Length = 146 Score = 45.1 bits (105), Expect = 0.003, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 25/71 (35%), Gaps = 6/71 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY------DIDMIKCIYCGLCQ 110 ERC C C CP A+ + + V D+ C CG+C Sbjct: 67 HVNMERCTGCNNCVVACPVNALELNTVNPSSTDKIYKVINGDAVILDVKHELCAGCGICV 126 Query: 111 EACPVDAIVEG 121 +ACP D I Sbjct: 127 DACPYDVIQLS 137 >gi|238919983|ref|YP_002933498.1| hypothetical protein NT01EI_2087 [Edwardsiella ictaluri 93-146] gi|259646560|sp|C5BDE6|RNFB_EDWI9 RecName: Full=Electron transport complex protein rnfB gi|238869552|gb|ACR69263.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146] Length = 191 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI + + + +C CGLC CP I Sbjct: 112 DEANCIGCTKCIQSCPVDAIVGAT----------RALHTVISDQCTGCGLCLPPCPTSCI 161 Query: 119 VEGP 122 P Sbjct: 162 QLVP 165 Score = 35.5 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 12/21 (57%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C C ++CPVDAI Sbjct: 111 IDEANCIGCTKCIQSCPVDAI 131 >gi|257388652|ref|YP_003178425.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Halomicrobium mukohataei DSM 12286] gi|257170959|gb|ACV48718.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Halomicrobium mukohataei DSM 12286] Length = 109 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 24/69 (34%), Gaps = 2/69 (2%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + CIA C CP P + + +CI C LC + C Sbjct: 37 THVAVDFDICIADGACLEDCPVDVFEWVDTPDHPESEIKADPA--HEDQCIDCMLCVDVC 94 Query: 114 PVDAIVEGP 122 PVDAI P Sbjct: 95 PVDAIDVDP 103 >gi|224540171|ref|ZP_03680710.1| hypothetical protein BACCELL_05084 [Bacteroides cellulosilyticus DSM 14838] gi|224518205|gb|EEF87310.1| hypothetical protein BACCELL_05084 [Bacteroides cellulosilyticus DSM 14838] Length = 600 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 6/56 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C C C +C AIT + ++D KC CGLC+ CP Sbjct: 6 DKAMCCGCNACGDVCAHDAITFRTDIEGFWYP------EVDKDKCTDCGLCERVCP 55 >gi|239817035|ref|YP_002945945.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Variovorax paradoxus S110] gi|239803612|gb|ACS20679.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Variovorax paradoxus S110] Length = 713 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 9/58 (15%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 + C C +C A AI+ + + R ++ C+ CG C CP A+ Sbjct: 320 VGCNACVEVCSAHAISSDKERQ---------RIVVNPQLCVGCGACTTVCPTGALGYT 368 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 32/82 (39%), Gaps = 9/82 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ C C C + CPA A+ + C+ CGLC CP +AI Sbjct: 580 NKDSCTLCLACVSACPASALQDNQNAPQLRFIEKN---------CVQCGLCATTCPENAI 630 Query: 119 VEGPNFEFATETRQELYYDKER 140 P A E +Q + ++ + Sbjct: 631 ALVPRLLAAPERKQPVLLNEAK 652 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 12/30 (40%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 ID+ C C C CP AI + A Sbjct: 192 IDLDLCTRCNACLGVCPEQAIGLDYQIDLA 221 >gi|114776888|ref|ZP_01451931.1| pyridine nucleotide-disulphide oxidoreductase family protein [Mariprofundus ferrooxydans PV-1] gi|114552974|gb|EAU55405.1| pyridine nucleotide-disulphide oxidoreductase family protein [Mariprofundus ferrooxydans PV-1] Length = 548 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 25/88 (28%), Gaps = 3/88 (3%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P ++ ++ + RC++C C + R Sbjct: 456 SPEQRLGGFEEILQGYSEKEALFEARRCLSCGNCFEC---DGCYGSCPEDAIIKLGKGKR 512 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPN 123 Y D KC C C E CP AI Sbjct: 513 YLYDYDKCTGCASCFEQCPCHAIEMVSE 540 >gi|92113125|ref|YP_573053.1| formate dehydrogenase, alpha subunit [Chromohalobacter salexigens DSM 3043] gi|91796215|gb|ABE58354.1| NAD-dependent formate dehydrogenase iron-sulfur protein / NAD-dependent formate dehydrogenase catalytic subunit [Chromohalobacter salexigens DSM 3043] Length = 953 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 3/64 (4%) Query: 59 GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115 + CI C LC C Q + ++ +D M C+ CG C +ACP Sbjct: 173 NLDACIECNLCVRACREVQGNDVIGMAHRGAASKIVFDFDDPMGDSTCVACGECVQACPT 232 Query: 116 DAIV 119 A++ Sbjct: 233 GALM 236 >gi|298206864|ref|YP_003715043.1| conserved ferredoxin-related protein [Croceibacter atlanticus HTCC2559] gi|83849498|gb|EAP87366.1| conserved ferredoxin-related protein [Croceibacter atlanticus HTCC2559] Length = 633 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 9/62 (14%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 +CI+C C C + +I C+ CG+C CP + Sbjct: 554 QCISCGNCSTYCEMGIDVRAYAQKGE---------NIVRSSCVGCGICSAVCPRGVLKLE 604 Query: 122 PN 123 + Sbjct: 605 ND 606 >gi|332295341|ref|YP_004437264.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Thermodesulfobium narugense DSM 14796] gi|332178444|gb|AEE14133.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Thermodesulfobium narugense DSM 14796] Length = 119 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 34/82 (41%), Gaps = 8/82 (9%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G ++ +E+C C C CP +I +E + D + C CG+ Sbjct: 39 GTWRVQHPTVNKEKCTNCMTCWLFCPDMSIVVEKKNN------KYEMLGFDPVHCKGCGV 92 Query: 109 CQEACPVDAIVE--GPNFEFAT 128 C + CPV+AI G +FE Sbjct: 93 CSKVCPVNAIEMVLGSDFENTE 114 >gi|294637338|ref|ZP_06715634.1| pyridine nucleotide-disulfide oxidoreductase family protein [Edwardsiella tarda ATCC 23685] gi|291089495|gb|EFE22056.1| pyridine nucleotide-disulfide oxidoreductase family protein [Edwardsiella tarda ATCC 23685] Length = 545 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 24/94 (25%), Gaps = 6/94 (6%) Query: 35 NYPFEKGSTSPRF---RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 P F G + + RC +C C Sbjct: 453 RQPEVSPEQRAGFDEIIGGLSGEQATYEAARCYSCGNCFEC---DGCYGACPEGAVIKLG 509 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 + +RY D KC C C CP AI E Sbjct: 510 KGLRYRFDYDKCTGCRACYLQCPCHAIEMISEEE 543 >gi|325980919|ref|YP_004293321.1| electron transport complex, RnfABCDGE type, B subunit [Nitrosomonas sp. AL212] gi|325530438|gb|ADZ25159.1| electron transport complex, RnfABCDGE type, B subunit [Nitrosomonas sp. AL212] Length = 227 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 10/66 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C C CP AI + + + +C C LC CP+D Sbjct: 80 WIDENLCIGCTFCIQSCPVDAIVGAAKQ----------MHTVITDECTGCDLCVTPCPMD 129 Query: 117 AIVEGP 122 I P Sbjct: 130 CISMIP 135 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 13/34 (38%), Positives = 15/34 (44%) Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 V ID CI C C ++CPVDAI Sbjct: 68 MHGYPRSYQVVAWIDENLCIGCTFCIQSCPVDAI 101 >gi|261349386|ref|ZP_05974803.1| glutamate synthase family protein [Methanobrevibacter smithii DSM 2374] gi|288861750|gb|EFC94048.1| glutamate synthase family protein [Methanobrevibacter smithii DSM 2374] Length = 498 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 10/64 (15%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 E+ C C C CP I G Y ++ KC+ C +C E CP Sbjct: 26 CDDRDEKICGRCFSCYNNCPHGVYEIIQGEP----------YPLNQEKCVGCRICLEMCP 75 Query: 115 VDAI 118 AI Sbjct: 76 NRAI 79 >gi|255656659|ref|ZP_05402068.1| pyruvate-flavodoxin oxidoreductase [Clostridium difficile QCD-23m63] gi|296449885|ref|ZP_06891649.1| pyruvate:ferredoxin oxidoreductase [Clostridium difficile NAP08] gi|296878266|ref|ZP_06902275.1| pyruvate:ferredoxin oxidoreductase [Clostridium difficile NAP07] gi|296261155|gb|EFH07986.1| pyruvate:ferredoxin oxidoreductase [Clostridium difficile NAP08] gi|296430714|gb|EFH16552.1| pyruvate:ferredoxin oxidoreductase [Clostridium difficile NAP07] Length = 1179 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 28/94 (29%), Gaps = 19/94 (20%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG + CI C C ICP A + Sbjct: 675 RGIAVDVPEWI-IDNCIQCNQCSFICPHACIRPVLVTEEELANAPEGFEAKKALGKGLEG 733 Query: 94 VRYDID--MIKCIYCGLCQEACP--VDAIVEGPN 123 ++Y I + C CG C + CP A+V P Sbjct: 734 LKYRIQVSPLDCTGCGNCADICPAKEKALVMKPI 767 >gi|206895470|ref|YP_002247506.1| pyruvate synthase subunit PorD (Pyruvate oxidoreductasedelta chain) (POR) (Pyruvic-ferredoxin oxidoreductase subunit delta) [Coprothermobacter proteolyticus DSM 5265] gi|206738087|gb|ACI17165.1| pyruvate synthase subunit PorD (Pyruvate oxidoreductasedelta chain) (POR) (Pyruvic-ferredoxin oxidoreductase subunit delta) [Coprothermobacter proteolyticus DSM 5265] Length = 94 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 10/65 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+C C C +CP A+ ++ G D + C CG+C E CPV I Sbjct: 38 NLEKCTHCMTCWVMCPDNAVNVKGGKMLGF----------DYLACKGCGVCAEVCPVKVI 87 Query: 119 VEGPN 123 Sbjct: 88 EMVKE 92 >gi|18977101|ref|NP_578458.1| mulitcopper oxidase domain-containing protein [Pyrococcus furiosus DSM 3638] gi|18892744|gb|AAL80853.1| multi domain protein containing corrinoid/iron-sulfur region [Pyrococcus furiosus DSM 3638] Length = 388 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 8/70 (11%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 L R ERC C +C +CP ++ R KC+ CG C Sbjct: 294 ERLLRVALDGERCTGCGVCVDVCPRACYEVDGENHTVMMPR--------ADKCVQCGACI 345 Query: 111 EACPVDAIVE 120 CP +A+ Sbjct: 346 VQCPFEALRF 355 Score = 35.5 bits (80), Expect = 2.9, Method: Composition-based stats. Identities = 7/33 (21%), Positives = 11/33 (33%) Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 +C CG+C + CP R + Sbjct: 304 ERCTGCGVCVDVCPRACYEVDGENHTVMMPRAD 336 >gi|114566560|ref|YP_753714.1| NADH dehydrogenase I subunit G [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337495|gb|ABI68343.1| NADH dehydrogenase I chain G [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 358 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 20/65 (30%), Gaps = 3/65 (4%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---YDIDMIKCIYCGLCQEACPV 115 +CI C C C R+ D C++CG C CP Sbjct: 150 DLNKCILCGACVRACEEMTGQDNLSYLNRGFHRKATTAGDVDYIDSDCVFCGQCVAVCPT 209 Query: 116 DAIVE 120 A+ E Sbjct: 210 GALQE 214 >gi|310778492|ref|YP_003966825.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Ilyobacter polytropus DSM 2926] gi|309747815|gb|ADO82477.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Ilyobacter polytropus DSM 2926] Length = 598 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 10/58 (17%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++CI C C +CP +AI R ++ I +CI CG C AC +AI Sbjct: 548 DKCIGCTACAKVCPTEAILG----------RVKEKHYIYQDRCIKCGACYNACRFNAI 595 >gi|300310808|ref|YP_003774900.1| NAD-dependent formate dehydrogenase subunit alpha [Herbaspirillum seropedicae SmR1] gi|300073593|gb|ADJ62992.1| NAD-dependent formate dehydrogenase, alpha subunit, protein [Herbaspirillum seropedicae SmR1] Length = 957 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 22/69 (31%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T +G +C+ CG C E Sbjct: 163 YFTYDPSKCIVCNRCVRACEETQGTFALTINGRGFESRVSAGQMEAFMESECVSCGACVE 222 Query: 112 ACPVDAIVE 120 ACP + E Sbjct: 223 ACPTATLTE 231 >gi|257064473|ref|YP_003144145.1| polyferredoxin, heterodixulfide reductase subunit A [Slackia heliotrinireducens DSM 20476] gi|256792126|gb|ACV22796.1| polyferredoxin, heterodixulfide reductase subunit A [Slackia heliotrinireducens DSM 20476] Length = 660 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 33/123 (26%), Gaps = 15/123 (12%) Query: 29 KAKTTINYPFEKGSTSPR---FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 T+ E + S F + C C CE CP + + Sbjct: 206 HPNITVKTLAEVENVSGYIGNFEVTIREKAKYIDYNLCTGCGACETKCPVRVDSDFEQGM 265 Query: 86 CHDGTRRTVRYD-------IDMIKCIY-----CGLCQEACPVDAIVEGPNFEFATETRQE 133 + ID C CG+C CP AI + TET Sbjct: 266 KKRTAIYKMFPQAVPAKPVIDAAHCRKLTEGKCGVCARVCPTGAIRYDDEDKVTTETYGA 325 Query: 134 LYY 136 + + Sbjct: 326 IIF 328 >gi|223041744|ref|ZP_03611937.1| electron transport complex protein RnfB [Actinobacillus minor 202] gi|223017428|gb|EEF15846.1| electron transport complex protein RnfB [Actinobacillus minor 202] Length = 203 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 21/64 (32%), Gaps = 10/64 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E+ CI C C CP AI + + + C C LC CP + Sbjct: 110 FIHEDMCIGCTKCIQACPVDAIIGTNK----------AMHTVIADLCTGCELCVAPCPTN 159 Query: 117 AIVE 120 I Sbjct: 160 CIEM 163 Score = 38.2 bits (87), Expect = 0.45, Method: Composition-based stats. Identities = 12/25 (48%), Positives = 14/25 (56%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 I CI C C +ACPVDAI+ Sbjct: 111 IHEDMCIGCTKCIQACPVDAIIGTN 135 >gi|159905022|ref|YP_001548684.1| indolepyruvate ferredoxin oxidoreductase subunit alpha [Methanococcus maripaludis C6] gi|159886515|gb|ABX01452.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Methanococcus maripaludis C6] Length = 612 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 32/91 (35%), Gaps = 17/91 (18%) Query: 38 FEKGSTSPRFRGEHA-----LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 G ++ FRG +RY +C CK+C AIT+ Sbjct: 533 EYNGPSAVVFRGNCVSLIKSNKRYVIDRNKCTGCKICVERLGCPAITLNGKIPE------ 586 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 M C CGLC+ CP DAI E Sbjct: 587 ------IMENCTGCGLCKAICPADAINEVDE 611 >gi|153870634|ref|ZP_01999994.1| heterodisulfide reductase, subunit A/methylviologen reducing hydrogenase, subunit delta [Beggiatoa sp. PS] gi|152072901|gb|EDN70007.1| heterodisulfide reductase, subunit A/methylviologen reducing hydrogenase, subunit delta [Beggiatoa sp. PS] Length = 725 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 28/83 (33%), Gaps = 13/83 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L +E C CK C CP AI + + +C CG C A Sbjct: 510 LSFPSFRKEGCTQCKRCTVECPFGAINEDEKRYPLF----------NEARCRRCGTCMGA 559 Query: 113 CPVDAIVEGPNFEFATETRQELY 135 CPV I ++ ET + Sbjct: 560 CPVRVISFEN---YSVETVGQAI 579 >gi|329954944|ref|ZP_08295961.1| 4Fe-4S binding domain protein [Bacteroides clarus YIT 12056] gi|328527048|gb|EGF54059.1| 4Fe-4S binding domain protein [Bacteroides clarus YIT 12056] Length = 373 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 22/55 (40%), Gaps = 10/55 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 E CI C +C C AI + +G + ID KC+ CG C C Sbjct: 192 DIENCIGCNICVKHCAHDAIHLNAGRKAE----------IDYAKCVGCGQCVALC 236 >gi|319789712|ref|YP_004151345.1| NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding protein [Thermovibrio ammonificans HB-1] gi|317114214|gb|ADU96704.1| NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding protein [Thermovibrio ammonificans HB-1] Length = 728 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 2/62 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPVD 116 +RCI C+ C +C G + D C +CG C + CPV Sbjct: 144 DNDRCILCRRCIRMCGENMGNRVLGILKRGYKAYISPFNGDFIESGCEHCGSCVDVCPVG 203 Query: 117 AI 118 ++ Sbjct: 204 SL 205 >gi|311280101|ref|YP_003942332.1| glutamate synthase, small subunit [Enterobacter cloacae SCF1] gi|308749296|gb|ADO49048.1| glutamate synthase, small subunit [Enterobacter cloacae SCF1] Length = 646 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 29/87 (33%), Gaps = 15/87 (17%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACK--LCEAICPAQAITIESGPRCHDGTRRT 93 +P + +P R L R + C C C A CP A+ + Sbjct: 31 WPQNRRDFTP--RIHVVLGRDASNAATCRHCNDAPCVASCPTHALRFDDN---------- 78 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++ CI C C ACP AI Sbjct: 79 -SVQLNQTLCIGCKNCAIACPFGAIEM 104 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 19/71 (26%), Gaps = 6/71 (8%) Query: 59 GEERCIACKLCEAIC----PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL--CQEA 112 CI C CE C A R + C +C C + Sbjct: 8 DAMECIGCHACEVACVSAHHQDAWPQNRRDFTPRIHVVLGRDASNAATCRHCNDAPCVAS 67 Query: 113 CPVDAIVEGPN 123 CP A+ N Sbjct: 68 CPTHALRFDDN 78 Score = 38.9 bits (89), Expect = 0.23, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 39/112 (34%), Gaps = 7/112 (6%) Query: 51 HALRRYPN----GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 HALR N + CI CK C CP AI + +G D + D+ Sbjct: 71 HALRFDDNSVQLNQTLCIGCKNCAIACPFGAIEMVAG--SEDAPALAQKCDLCREHVTGK 128 Query: 107 GLCQEACPVDAIVEGPNFEFATETRQELYYDKE-RLLNNGDRWESEIVRNIV 157 C CP A+ + R+ + +LL G R E + + Sbjct: 129 PACVANCPTRALRLMDDDGLRQLQRERQIRAAQGQLLQAGPRSRRETLLDKA 180 >gi|317050947|ref|YP_004112063.1| ferredoxin-dependent glutamate synthase [Desulfurispirillum indicum S5] gi|316946031|gb|ADU65507.1| ferredoxin-dependent glutamate synthase [Desulfurispirillum indicum S5] Length = 546 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 26/80 (32%), Gaps = 14/80 (17%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPR---------CHDGTRRTVRYDI----- 98 R +RC C C A CP +AI R I Sbjct: 15 FWRINYKHDRCTMCGKCLASCPFRAIEAGVEKRRRVISDHLTPKPKVLFQTVPVIRQVLN 74 Query: 99 DMIKCIYCGLCQEACPVDAI 118 C CG+C++ CP +AI Sbjct: 75 HHEACRGCGICEKVCPNEAI 94 >gi|238912647|ref|ZP_04656484.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] Length = 287 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 25/78 (32%), Gaps = 12/78 (15%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C C C CP I + I +C CG C CP A+ Sbjct: 190 PQECRMCGACWRSCPENVIQFDDN-----------TLTIAAARCTGCGGCAAVCPHQALR 238 Query: 120 EGPNFEFATETRQELYYD 137 + E A+ TR + Sbjct: 239 LRFDVEPAS-TRHSAVHT 255 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 11/50 (22%) Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C +CPAQA ++ G ID +CI CG C CPVDAI Sbjct: 29 CADVCPAQAFSLAQGQVS-----------IDTTRCIACGDCLFVCPVDAI 67 >gi|227830006|ref|YP_002831785.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus islandicus L.S.2.15] gi|284996921|ref|YP_003418688.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Sulfolobus islandicus L.D.8.5] gi|227456453|gb|ACP35140.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus islandicus L.S.2.15] gi|284444816|gb|ADB86318.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Sulfolobus islandicus L.D.8.5] Length = 455 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 17/92 (18%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 L Y NG + AC +CE CP AI ++ + +ID IKC CGL Sbjct: 109 KPIYLSEYCNGLYK--ACNVCEFSCPYNAIKVD----------KKTGVNIDYIKCTSCGL 156 Query: 109 CQEACPVDAIVE-----GPNFEFATETRQELY 135 C +CPV AI FE A ++ Sbjct: 157 CVASCPVSAIQFPSLSQNSIFELAKVKGEKRI 188 Score = 41.6 bits (96), Expect = 0.035, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 7/68 (10%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 + L RC C+ C CP A+ + + D +CI C +C Sbjct: 290 PYILFDVSIDNNRCTLCESCVNWCPTSALKLRRNSGVE-------EINFDPKRCIGCNVC 342 Query: 110 QEACPVDA 117 CP Sbjct: 343 VNVCPESC 350 >gi|188588130|ref|YP_001920151.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium botulinum E3 str. Alaska E43] gi|188498411|gb|ACD51547.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium botulinum E3 str. Alaska E43] Length = 1166 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 33/105 (31%), Gaps = 20/105 (19%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE---------------- 81 FE G+ + RG + E+CI C C +CP AI Sbjct: 665 FEAGTAAFEKRGIAVNVPEWD-AEKCIQCNQCSLVCPHAAIRPILLNEAEKNAAPANATI 723 Query: 82 -SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD--AIVEGPN 123 + + + C CG C + CP A+V P Sbjct: 724 VDAKALKSEEKLFYTMAVAPLDCSGCGNCAQICPAPGKALVMKPQ 768 >gi|229578325|ref|YP_002836723.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus islandicus Y.G.57.14] gi|229582724|ref|YP_002841123.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus islandicus Y.N.15.51] gi|228009039|gb|ACP44801.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus islandicus Y.G.57.14] gi|228013440|gb|ACP49201.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus islandicus Y.N.15.51] Length = 455 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 17/92 (18%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 L Y NG + AC +CE CP AI ++ + +ID IKC CGL Sbjct: 109 KPIYLSEYCNGLYK--ACNVCEFSCPYNAIKVD----------KKTGVNIDYIKCTSCGL 156 Query: 109 CQEACPVDAIVE-----GPNFEFATETRQELY 135 C +CPV AI FE A ++ Sbjct: 157 CVASCPVSAIQFPSLSQNSIFELAKVKGEKRI 188 Score = 41.6 bits (96), Expect = 0.035, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 7/68 (10%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 + L RC C+ C CP A+ + + D +CI C +C Sbjct: 290 PYILFDVSIDNNRCTLCESCVNWCPTSALKLRRNSGVE-------EINFDPKRCIGCNVC 342 Query: 110 QEACPVDA 117 CP Sbjct: 343 VNVCPESC 350 >gi|91772648|ref|YP_565340.1| nitrite and sulphite reductase [Methanococcoides burtonii DSM 6242] gi|91711663|gb|ABE51590.1| coenzyme F420-dependent sulfite reductase [Methanococcoides burtonii DSM 6242] Length = 639 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 24/59 (40%), Gaps = 11/59 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 E+C C C +C AI++ SG ID CI CG C CP +A Sbjct: 515 DTEKCTGCGRCSELCKLNAISVISGKAV-----------IDRDLCINCGWCVRGCPHEA 562 >gi|71900626|ref|ZP_00682752.1| Electron transport complex, RnfABCDGE type, B subunit [Xylella fastidiosa Ann-1] gi|71729620|gb|EAO31725.1| Electron transport complex, RnfABCDGE type, B subunit [Xylella fastidiosa Ann-1] Length = 139 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 24/67 (35%), Gaps = 10/67 (14%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C C CP AI + + + C C LC ACPV+ Sbjct: 83 WIIEADCIGCTKCIQACPVDAIIGGAK----------HMHTVIAALCTGCELCVPACPVE 132 Query: 117 AIVEGPN 123 I PN Sbjct: 133 CIELHPN 139 >gi|322806473|emb|CBZ04042.1| mind superfamily P-loop ATPase containing an inserted ferredoxin domain [Clostridium botulinum H04402 065] Length = 281 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 23/65 (35%), Gaps = 15/65 (23%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ CI C CE +C AI + ID C CG C CP +AI Sbjct: 63 DEDICIKCTECELVCKFDAIEN---------------FKIDPFLCEGCGACTLICPQNAI 107 Query: 119 VEGPN 123 Sbjct: 108 KLEDE 112 >gi|254168286|ref|ZP_04875132.1| 4Fe-4S binding domain protein [Aciduliprofundum boonei T469] gi|197622795|gb|EDY35364.1| 4Fe-4S binding domain protein [Aciduliprofundum boonei T469] Length = 166 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 34/99 (34%), Gaps = 9/99 (9%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 + Y + T+ +K R + + I C C+ ICP AI ++ Sbjct: 1 MTEEYLERGYLTLEELKKKVELPSEERLQGKHPVAVPECPQRIPCTPCKEICPVNAIKMD 60 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + ++ KCI C LC + CP A Sbjct: 61 NPNDPPV---------VNYDKCIGCSLCVQICPGLAFFM 90 >gi|168179907|ref|ZP_02614571.1| iron-sulfur binding protein [Clostridium botulinum NCTC 2916] gi|226949492|ref|YP_002804583.1| CobQ/CobB/MinD/ParA family protein [Clostridium botulinum A2 str. Kyoto] gi|182669235|gb|EDT81211.1| iron-sulfur binding protein [Clostridium botulinum NCTC 2916] gi|226844018|gb|ACO86684.1| CobQ/CobB/MinD/ParA family protein [Clostridium botulinum A2 str. Kyoto] Length = 281 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 23/65 (35%), Gaps = 15/65 (23%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ CI C CE +C AI + ID C CG C CP +AI Sbjct: 63 DEDICIKCTECELVCKFDAIEN---------------FKIDPFLCEGCGACTLICPQNAI 107 Query: 119 VEGPN 123 Sbjct: 108 KLEDE 112 >gi|158319788|ref|YP_001512295.1| nitroreductase [Alkaliphilus oremlandii OhILAs] gi|158139987|gb|ABW18299.1| nitroreductase [Alkaliphilus oremlandii OhILAs] Length = 266 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 33/86 (38%), Gaps = 13/86 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+CI C LC CP + +++G + KC+ CG C CP DA Sbjct: 10 DVEKCIGCGLCCKDCPLHVLVLQNGKA-----------TMMAEKCLECGHCVAICPKDAF 58 Query: 119 VEG--PNFEFATETRQELYYDKERLL 142 E T + D++ LL Sbjct: 59 TMRGYDMQEVKTYDKNIFGIDEDILL 84 >gi|281357847|ref|ZP_06244333.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548] gi|281315794|gb|EFA99821.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548] Length = 614 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 10/62 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 +RC+ C LC CP I+ E R +R+ ID +CI CG+C + C Sbjct: 560 YEISDRCVGCGLCLHRCPVNCISGE----------RKMRHRIDQSRCIKCGVCFQTCKFH 609 Query: 117 AI 118 A+ Sbjct: 610 AV 611 Score = 37.0 bits (84), Expect = 0.93, Method: Composition-based stats. Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%) Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + +RY+I +C+ CGLC CPV+ I Sbjct: 549 CPAGVCAKLIRYEIS-DRCVGCGLCLHRCPVNCI 581 >gi|118602190|ref|YP_903405.1| electron transport complex, RnfABCDGE type, B subunit [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567129|gb|ABL01934.1| electron transport complex, RnfABCDGE type, B subunit [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 179 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 23/61 (37%), Gaps = 10/61 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C LC +CP A S + + +C C LC CPVD I Sbjct: 114 DEAVCIGCTLCIQVCPVDAFLGASKMMT----------QVIIDECTGCDLCIPVCPVDCI 163 Query: 119 V 119 Sbjct: 164 H 164 >gi|53802983|ref|YP_115217.1| electron transport complex subunit B [Methylococcus capsulatus str. Bath] gi|53756744|gb|AAU91035.1| electron transport complex, B subunit [Methylococcus capsulatus str. Bath] Length = 182 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C +CP A+ + + C CG C + CP + + Sbjct: 108 DESTCIGCARCYKVCPTDALVGAPKQ----------IHAVIADACTACGKCVDVCPTECL 157 Query: 119 VEGP 122 P Sbjct: 158 RLHP 161 >gi|78357324|ref|YP_388773.1| ferredoxin hydrogenase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78219729|gb|ABB39078.1| Ferredoxin hydrogenase [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 439 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 8/76 (10%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 P+ +R ++C+AC CE CP + + R +D + C+ Sbjct: 38 PKDVDPATIRFVEVDHDKCMACGECEYHCPTGVMQEVTED--------GYRGVVDPVACV 89 Query: 105 YCGLCQEACPVDAIVE 120 CG C CP AI E Sbjct: 90 NCGQCLANCPFGAIHE 105 >gi|89894363|ref|YP_517850.1| hypothetical protein DSY1617 [Desulfitobacterium hafniense Y51] gi|89333811|dbj|BAE83406.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 206 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 12/56 (21%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C+ C C A++ + KCI CG C +CP D I Sbjct: 98 CTGCQACCRSCQEGALSWQGELEFE------------PTKCIGCGDCVRSCPTDKI 141 >gi|73748035|ref|YP_307274.1| putative reductive dehalogenase [Dehalococcoides sp. CBDB1] gi|73659751|emb|CAI82358.1| putative reductive dehalogenase [Dehalococcoides sp. CBDB1] Length = 506 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 3/61 (4%) Query: 59 GEERCIACKLCEAICPAQAI---TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 G E C C +C CP AI + + +D+ KC +C +CQ CP Sbjct: 386 GYEFCKTCGICADACPMGAIQKGEPSWDASEIWQNPGYLGWRLDLTKCSHCPVCQGVCPF 445 Query: 116 D 116 + Sbjct: 446 N 446 Score = 33.9 bits (76), Expect = 7.6, Method: Composition-based stats. Identities = 10/22 (45%), Positives = 14/22 (63%) Query: 100 MIKCIYCGLCQEACPVDAIVEG 121 C CG+C +ACP+ AI +G Sbjct: 387 YEFCKTCGICADACPMGAIQKG 408 >gi|16761442|ref|NP_457059.1| polyferredoxin [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29140861|ref|NP_804203.1| polyferredoxin [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|213026884|ref|ZP_03341331.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] gi|213163416|ref|ZP_03349126.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] gi|213649659|ref|ZP_03379712.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213857323|ref|ZP_03384294.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|25512770|pir||AF0822 probable polyferredoxin STY2772 [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16503742|emb|CAD02730.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Typhi] gi|29136486|gb|AAO68052.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 287 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 25/78 (32%), Gaps = 12/78 (15%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C C C CP I + I +C CG C CP A+ Sbjct: 190 PQECRMCGACWRSCPENVIQFDDD-----------TLTIAAARCTGCGGCAAVCPHQALR 238 Query: 120 EGPNFEFATETRQELYYD 137 + E A+ TR + Sbjct: 239 LRFDVEPAS-TRHSAVHT 255 Score = 35.1 bits (79), Expect = 3.8, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID +CI CG C CPVDAI Sbjct: 47 IDTTRCIACGDCLFVCPVDAI 67 >gi|152979688|ref|YP_001345317.1| quinol dehydrogenase membrane component [Actinobacillus succinogenes 130Z] gi|150841411|gb|ABR75382.1| ferredoxin-type protein, NapH/MauN family [Actinobacillus succinogenes 130Z] Length = 298 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 23/73 (31%), Gaps = 5/73 (6%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 ++ RC C C +CP R I CI CG C + Sbjct: 222 IKVNVVDRARCDRCMDCYNVCP-----EPQVLRLPLHGSEHDSQIILEKDCITCGRCIDV 276 Query: 113 CPVDAIVEGPNFE 125 CP + G FE Sbjct: 277 CPENVFAFGSRFE 289 >gi|320156874|ref|YP_004189253.1| electron transport complex protein RnfC [Vibrio vulnificus MO6-24/O] gi|319932186|gb|ADV87050.1| electron transport complex protein RnfC [Vibrio vulnificus MO6-24/O] Length = 690 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 20/57 (35%), Gaps = 9/57 (15%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI----KCIYCGLCQEACP 114 CI C C CPA + P+ + +D CI CG C CP Sbjct: 377 ECIRCGACAEACPASLL-----PQQLQWHAKAEEFDKCEELNLKDCIECGACAFVCP 428 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 19/43 (44%) Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + A ++ TR+ + ++CI CG C EACP Sbjct: 347 LPHANVPITKTSNCILAPTRKEISPAGYEMECIRCGACAEACP 389 >gi|315427054|dbj|BAJ48671.1| coenzyme F420-dependent hydrogenase beta subunit [Candidatus Caldiarchaeum subterraneum] Length = 399 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 23/67 (34%), Gaps = 10/67 (14%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 RG+ + G RC C C +CP + + CI C Sbjct: 47 RGDQVIVDGVVGTGRCSGCAACVTVCPTNVFDYVEDHPVNT----------RLNHCIECD 96 Query: 108 LCQEACP 114 LC EACP Sbjct: 97 LCVEACP 103 Score = 33.9 bits (76), Expect = 6.9, Method: Composition-based stats. Identities = 7/47 (14%), Positives = 12/47 (25%) Query: 78 ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 G + V + +C C C CP + + Sbjct: 37 WHHALEWVSKRGDQVIVDGVVGTGRCSGCAACVTVCPTNVFDYVEDH 83 >gi|313680540|ref|YP_004058279.1| hypothetical protein Ocepr_1653 [Oceanithermus profundus DSM 14977] gi|313153255|gb|ADR37106.1| protein of unknown function DUF224 cysteine-rich region domain protein [Oceanithermus profundus DSM 14977] Length = 680 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 27/126 (21%), Positives = 32/126 (25%), Gaps = 29/126 (23%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPN----GEERCIACKLCEA 71 V AF L R K + P + + G L + CI C C Sbjct: 238 MVSAFKLTFR---AEKPGVLDPIDFEDETAESFGAARLEDFSWPRLIDPYACIMCNRCAD 294 Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDM----------------------IKCIYCGLC 109 +CPA P R DI C C C Sbjct: 295 VCPANVTGKALNPAALIINERYEFNDILPAFAAGEASPRPLLEFALDADALWSCTTCMAC 354 Query: 110 QEACPV 115 E CPV Sbjct: 355 VEVCPV 360 >gi|254785633|ref|YP_003073062.1| electron transport complex, RnfABCDGE type, B subunit [Teredinibacter turnerae T7901] gi|237684395|gb|ACR11659.1| electron transport complex, RnfABCDGE type, B subunit [Teredinibacter turnerae T7901] Length = 175 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 26/67 (38%), Gaps = 10/67 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 EE C+ C C CP A+ +G + + C C CQEACP + I Sbjct: 106 NEELCVGCTKCFKACPTDAVVGANGQ----------IHVVISSACTGCKKCQEACPENCI 155 Query: 119 VEGPNFE 125 P E Sbjct: 156 SMSPEEE 162 >gi|182705280|sp|P60200|HDRA_METJA RecName: Full=CoB--CoM heterodisulfide reductase iron-sulfur subunit A Length = 657 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 28/80 (35%), Gaps = 7/80 (8%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAIT-------IESGPRCHDGTRRTVRYDI 98 F + E C C C A+CP + + Y I Sbjct: 228 NFEVTIEKKPRYVDENICTGCGACAAVCPIEVPNEFDLGLGTRKAIYVPFAQAVPLVYTI 287 Query: 99 DMIKCIYCGLCQEACPVDAI 118 DM CI CGLC++AC AI Sbjct: 288 DMDHCIRCGLCEKACGPGAI 307 Score = 41.2 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 7/71 (9%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 + R E+ C C++C +CP AIT + ++ + C CG C Sbjct: 570 RIEMIRAVVDEDVCGGCQVCAKMCPYNAITYVEKD-------GHLVAQVNDVACKGCGSC 622 Query: 110 QEACPVDAIVE 120 ACP A+ Sbjct: 623 AGACPSGAMQL 633 >gi|167771902|ref|ZP_02443955.1| hypothetical protein ANACOL_03275 [Anaerotruncus colihominis DSM 17241] gi|167665700|gb|EDS09830.1| hypothetical protein ANACOL_03275 [Anaerotruncus colihominis DSM 17241] Length = 384 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 11/62 (17%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 C+ C C CPA+ I I++ I++ CI+C CQE CPV Sbjct: 319 HVRPRDCVGCGRCAESCPAKTIRIKNKKA-----------KINLSNCIHCFCCQEMCPVR 367 Query: 117 AI 118 AI Sbjct: 368 AI 369 Score = 34.3 bits (77), Expect = 5.0, Method: Composition-based stats. Identities = 9/28 (32%), Positives = 12/28 (42%) Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGP 122 R + C+ CG C E+CP I Sbjct: 317 RPHVRPRDCVGCGRCAESCPAKTIRIKN 344 >gi|218779474|ref|YP_002430792.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfatibacillum alkenivorans AK-01] gi|218760858|gb|ACL03324.1| Putative uncharacterized protein(contains glutamate synthase domain and a partial HdrA domain) [Desulfatibacillum alkenivorans AK-01] Length = 1115 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 6/61 (9%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 +RC C C A+CP QAI ++ +D C CG C CP + Sbjct: 1042 CVDADRCRGCGSCVAVCPYQAIGLKQNTVGGWYAF------VDEALCKGCGNCISVCPNN 1095 Query: 117 A 117 A Sbjct: 1096 A 1096 Score = 38.2 bits (87), Expect = 0.39, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 2/49 (4%) Query: 77 AITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQEACPVDAIVEGPN 123 A + + G R+ Y +D +C CG C CP AI N Sbjct: 1020 ATAVLAASVMPRGPRQNKGYTSCVDADRCRGCGSCVAVCPYQAIGLKQN 1068 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 10/18 (55%), Positives = 12/18 (66%) Query: 98 IDMIKCIYCGLCQEACPV 115 +D +C CG C EACPV Sbjct: 106 VDPERCTLCGKCVEACPV 123 >gi|158340823|ref|YP_001521991.1| bidirectional hydrogenase complex protein HoxU [Acaryochloris marina MBIC11017] gi|158311064|gb|ABW32677.1| hydrogenase subunit U [Acaryochloris marina MBIC11017] Length = 239 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 27/93 (29%), Gaps = 12/93 (12%) Query: 31 KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--QAITIESGPRCHD 88 + T +P S G RC+ C C +C A T + R Sbjct: 124 RFTYQFPDRSVDISHPQFGV--------DHNRCVLCTRCIRVCDEIEGAHTWDMAGRGRK 175 Query: 89 GTRRTVRYDID--MIKCIYCGLCQEACPVDAIV 119 T C CG C ACP AI Sbjct: 176 SRVITDLNQPWGEAESCTACGKCVNACPTGAIF 208 >gi|21242137|ref|NP_641719.1| ferredoxin [Xanthomonas axonopodis pv. citri str. 306] gi|21107549|gb|AAM36255.1| ferredoxin II [Xanthomonas axonopodis pv. citri str. 306] Length = 168 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 31/85 (36%), Gaps = 11/85 (12%) Query: 39 EKGSTSPRFRGEHAL-RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 R RG H L + E CI C C CP AI G + + Sbjct: 92 VPPRPYDRSRGAHKLPQVAWIVEADCIGCTKCIQACPVDAIV---------GGAKHMHTV 142 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 I + C C LC ACPVD I P Sbjct: 143 IAPL-CTGCELCLPACPVDCIELHP 166 >gi|21228649|ref|NP_634571.1| putative ferredoxin [Methanosarcina mazei Go1] gi|20907149|gb|AAM32243.1| putative ferredoxin [Methanosarcina mazei Go1] Length = 266 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 30/92 (32%), Gaps = 14/92 (15%) Query: 33 TINYPFEKGSTSPRFRGEHALR--RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGT 90 T + + + G L + + C C C +CP AI E+ G Sbjct: 163 TSQDSDVQVPGTYPYGGVTELWTVDFIAVSDDCSQCGTCAEVCPVGAIDPENSNLTDTG- 221 Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 KCI C C + CP +A P Sbjct: 222 -----------KCITCCACIKNCPQNARSMKP 242 >gi|147668763|ref|YP_001213581.1| reductive dehalogenase [Dehalococcoides sp. BAV1] gi|146269711|gb|ABQ16703.1| reductive dehalogenase [Dehalococcoides sp. BAV1] Length = 506 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 3/61 (4%) Query: 59 GEERCIACKLCEAICPAQAI---TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 G E C C +C CP AI + + +D+ KC +C +CQ CP Sbjct: 386 GYEFCKTCGICADACPMGAIQKGEPSWDASEIWQNPGYLGWRLDLTKCSHCPVCQGVCPF 445 Query: 116 D 116 + Sbjct: 446 N 446 Score = 33.9 bits (76), Expect = 7.7, Method: Composition-based stats. Identities = 10/22 (45%), Positives = 14/22 (63%) Query: 100 MIKCIYCGLCQEACPVDAIVEG 121 C CG+C +ACP+ AI +G Sbjct: 387 YEFCKTCGICADACPMGAIQKG 408 >gi|332529347|ref|ZP_08405308.1| formate dehydrogenase, alpha subunit [Hylemonella gracilis ATCC 19624] gi|332041145|gb|EGI77510.1| formate dehydrogenase, alpha subunit [Hylemonella gracilis ATCC 19624] Length = 961 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 23/75 (30%), Gaps = 3/75 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T SG +C+ CG C E Sbjct: 168 YFNYDASKCIVCNRCVRACEETQGTFALTISGRGFDSRVSPGQDEPFMASECVSCGACVE 227 Query: 112 ACPVDAIVEGPNFEF 126 ACP + E E Sbjct: 228 ACPTATLQEKSVVEL 242 >gi|319764056|ref|YP_004127993.1| 4fe-4S ferredoxin iron-sulfur binding domain-containing protein [Alicycliphilus denitrificans BC] gi|317118617|gb|ADV01106.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Alicycliphilus denitrificans BC] Length = 699 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 26/71 (36%), Gaps = 9/71 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++RC C C + CPA A+ R C+ CGLC+ CP AI Sbjct: 566 DKDRCTLCMSCVSACPASALQDNPQAPQLRFIERN---------CVQCGLCERTCPEGAI 616 Query: 119 VEGPNFEFATE 129 P E Sbjct: 617 ALQPRLLLTPE 627 Score = 40.1 bits (92), Expect = 0.10, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 9/55 (16%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C IC A+AI + + + ++ C+ CG C CP A+ Sbjct: 318 VGCSACVDICSAEAIASDPARQ---------QVVVNPHLCVGCGACTTVCPTGAM 363 Score = 37.4 bits (85), Expect = 0.61, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 13/30 (43%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 ID+ C C C ACP AI + A Sbjct: 192 IDLDLCTRCNACVAACPEGAIGLDYQIDMA 221 Score = 37.4 bits (85), Expect = 0.70, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 32/88 (36%), Gaps = 16/88 (18%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 L P + C C C A CP AI ++ Y IDM C C Sbjct: 185 QWLADNPIDLDLCTRCNACVAACPEGAIGLD--------------YQIDMAACTGHRDCV 230 Query: 111 EACPVD-AIVEGPNFEFATETRQELYYD 137 +AC V AI E +++ +L D Sbjct: 231 KACAVAGAIRFDREAEPQSQSF-DLVLD 257 >gi|262279872|ref|ZP_06057657.1| NADH:ubiquinone oxidoreductase [Acinetobacter calcoaceticus RUH2202] gi|262260223|gb|EEY78956.1| NADH:ubiquinone oxidoreductase [Acinetobacter calcoaceticus RUH2202] Length = 263 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 28/85 (32%), Gaps = 10/85 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E + G + E+ CI C C + CP AI + + I Sbjct: 68 ESSVWPVQTDGRPQRMKAIIREDECIGCTKCISACPVDAIIGSGK----------LMHTI 117 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPN 123 C C LC CPVD I + Sbjct: 118 LTDLCTGCELCIPPCPVDCIDLVED 142 >gi|255526975|ref|ZP_05393868.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium carboxidivorans P7] gi|296185139|ref|ZP_06853549.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7] gi|255509334|gb|EET85681.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium carboxidivorans P7] gi|296049973|gb|EFG89397.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7] Length = 369 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 22/57 (38%), Gaps = 10/57 (17%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + C ACK C C +AI + ID KCI CG C C +A Sbjct: 194 KNCKACKQCIKSCSQKAINLNENKAAS----------IDYSKCIGCGQCVAVCQFNA 240 >gi|227826901|ref|YP_002828680.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus islandicus M.14.25] gi|229584072|ref|YP_002842573.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus islandicus M.16.27] gi|238619027|ref|YP_002913852.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus islandicus M.16.4] gi|227458696|gb|ACP37382.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus islandicus M.14.25] gi|228019121|gb|ACP54528.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus islandicus M.16.27] gi|238380096|gb|ACR41184.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus islandicus M.16.4] Length = 455 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 17/92 (18%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 L Y NG + AC +CE CP AI ++ + +ID IKC CGL Sbjct: 109 KPIYLSEYCNGLYK--ACNVCEFSCPYNAIKVD----------KKTGVNIDYIKCTSCGL 156 Query: 109 CQEACPVDAIVE-----GPNFEFATETRQELY 135 C +CPV AI FE A ++ Sbjct: 157 CVASCPVSAIQFPSLSQNSIFELAKVKGEKRI 188 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 22/68 (32%), Gaps = 7/68 (10%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 + L RC C+ C CP A+ + D D +CI C LC Sbjct: 290 PYILFDVSIDNNRCTLCESCVNWCPTSALKLRRDSGVE-------EIDFDPKRCIGCNLC 342 Query: 110 QEACPVDA 117 CP Sbjct: 343 VNVCPESC 350 >gi|223558018|gb|ACM91024.1| NADH:ubiquinone oxidoreductase subunit [uncultured bacterium URE4] Length = 590 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 28/68 (41%), Gaps = 3/68 (4%) Query: 59 GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPV 115 +CI C+ CE++C Q++ + + ++ C+ CG C CP Sbjct: 148 DANKCIMCRRCESVCHEYQSVGAIGAIERGFPAVVSTAFGKNLTDTNCVLCGQCVAVCPT 207 Query: 116 DAIVEGPN 123 A+ E N Sbjct: 208 GALAEVDN 215 >gi|213419271|ref|ZP_03352337.1| pyruvate-flavodoxin oxidoreductase [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 561 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 21/119 (17%), Positives = 30/119 (25%), Gaps = 28/119 (23%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A EE C C C A C Sbjct: 444 MLAGLGDAL------PVSALPPDGTWPMGTTRWEKRNIAEEIPVWKEELCTQCNHCVAAC 497 Query: 74 PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 P A +++ R G + + C C LC E CP Sbjct: 498 PHSAIRAKVVSPQAMENAPASLHSLDVKSRDMRGQKY--VLQVAPEDCTGCNLCVEVCP 554 >gi|200388028|ref|ZP_03214640.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|199605126|gb|EDZ03671.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Virchow str. SL491] Length = 287 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 25/78 (32%), Gaps = 12/78 (15%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C C C CP I + I +C CG C CP A+ Sbjct: 190 PQECRMCGACWRSCPENVIQFDDN-----------TLTIAAARCTGCGGCAAVCPHQALR 238 Query: 120 EGPNFEFATETRQELYYD 137 + E A+ TR + Sbjct: 239 LRFDVEPAS-TRHSAVHT 255 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 11/50 (22%) Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C +CPAQA ++ G ID +CI CG C CPVDAI Sbjct: 29 CADVCPAQAFSLAQGQVS-----------IDTTRCIACGDCLFVCPVDAI 67 >gi|119504735|ref|ZP_01626813.1| formate dehydrogenase alpha subunit [marine gamma proteobacterium HTCC2080] gi|119459340|gb|EAW40437.1| formate dehydrogenase alpha subunit [marine gamma proteobacterium HTCC2080] Length = 931 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 3/81 (3%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T + + +C+ CG C + Sbjct: 163 YFSFDASKCIVCSRCVRACSEVQGTFALTIAARGFESKVSPSEENAFLDSECVSCGACVQ 222 Query: 112 ACPVDAIVEGPNFEFATETRQ 132 ACP + E + TR+ Sbjct: 223 ACPTATLQEKQVIDLGVPTRK 243 >gi|89902033|ref|YP_524504.1| 4Fe-4S ferredoxin [Rhodoferax ferrireducens T118] gi|89346770|gb|ABD70973.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodoferax ferrireducens T118] Length = 697 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 9/85 (10%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L ++ C C C CPA A+ + + C+ CGLC + Sbjct: 558 LGALVINKDACTLCLSCVNACPASALQDNPQA---------LELRLIEKNCVQCGLCVKT 608 Query: 113 CPVDAIVEGPNFEFATETRQELYYD 137 CP A+ P + + + + + Sbjct: 609 CPEQALTLLPRLSLSPQRNEAVVLN 633 Score = 40.9 bits (94), Expect = 0.058, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 21/53 (39%), Gaps = 9/53 (16%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C +C A AI + R + ++ CI CG C CP A+ Sbjct: 315 CTACIDVCSASAIESD---------RSRQQIKVNPNLCIGCGTCSTVCPTGAM 358 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 13/30 (43%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 ID+ C C C CP DAI + + Sbjct: 190 IDLDLCTRCNACLAVCPEDAIGLDYQVDLS 219 Score = 34.3 bits (77), Expect = 6.4, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 27/76 (35%), Gaps = 15/76 (19%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 LR P + C C C A+CP AI ++ Y +D+ C C Sbjct: 183 QWLRSNPIDLDLCTRCNACLAVCPEDAIGLD--------------YQVDLSACQAHRACV 228 Query: 111 EACPVD-AIVEGPNFE 125 + C V AI E Sbjct: 229 KVCQVAGAIDFQREPE 244 >gi|51244622|ref|YP_064506.1| electron transport complex protein [Desulfotalea psychrophila LSv54] gi|50875659|emb|CAG35499.1| probable electron transport complex protein [Desulfotalea psychrophila LSv54] Length = 438 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 18/59 (30%), Gaps = 1/59 (1%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 N CI C C CP E G G R + C CG C CP Sbjct: 363 DTNEPGPCIRCGWCLDACPMGLEPKEIGVFVEAG-RAEDTAQFGVFDCFECGSCAFVCP 420 >gi|148262605|ref|YP_001229311.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Geobacter uraniireducens Rf4] gi|146396105|gb|ABQ24738.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Geobacter uraniireducens Rf4] Length = 368 Score = 45.1 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 23/63 (36%), Gaps = 11/63 (17%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C AC +C C AI I G ID KC CG C AC AI Sbjct: 193 KYCTACGICLKSCAHDAIAIIEGKAV-----------IDPEKCTGCGRCITACLQKAINV 241 Query: 121 GPN 123 N Sbjct: 242 QWN 244 >gi|325290633|ref|YP_004266814.1| nitrite and sulphite reductase 4Fe-4S region [Syntrophobotulus glycolicus DSM 8271] gi|324966034|gb|ADY56813.1| nitrite and sulphite reductase 4Fe-4S region [Syntrophobotulus glycolicus DSM 8271] Length = 289 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 11/66 (16%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C +C C AIT +D KC CG C ++CP DA P Sbjct: 168 CTLCGVCAKACRDGAITQTETELL-----------LDESKCNNCGRCVKSCPFDAWRGEP 216 Query: 123 NFEFAT 128 + + Sbjct: 217 GYILSF 222 >gi|283852917|ref|ZP_06370177.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfovibrio sp. FW1012B] gi|283571675|gb|EFC19675.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfovibrio sp. FW1012B] Length = 1217 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 33/107 (30%), Gaps = 19/107 (17%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV-------- 94 TS + A+ +E CI C C +CP I Sbjct: 669 TSRYEKRGVAINIPHWIKENCIQCNQCSLVCPHATIRPFLADEAEMAGAPASYDTLPASG 728 Query: 95 --------RYDIDMIKCIYCGLCQEACPV--DAIVEGP-NFEFATET 130 R + + C+ CG C + CP A+V P E A + Sbjct: 729 KELKGLAYRMQVFPMDCMGCGSCADVCPAKQKALVMKPLETEVAEQN 775 >gi|291613327|ref|YP_003523484.1| electron transport complex, RnfABCDGE type, B subunit [Sideroxydans lithotrophicus ES-1] gi|291583439|gb|ADE11097.1| electron transport complex, RnfABCDGE type, B subunit [Sideroxydans lithotrophicus ES-1] Length = 178 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 10/61 (16%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C C +CP AI + + + C CG C+E CP +++ P Sbjct: 110 CIGCTRCFKVCPTDAIMGAA----------QQIHVVFREACTACGKCEEVCPTESVKLQP 159 Query: 123 N 123 Sbjct: 160 I 160 Score = 34.7 bits (78), Expect = 4.3, Method: Composition-based stats. Identities = 9/28 (32%), Positives = 14/28 (50%) Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + ++ CI C C + CP DAI+ Sbjct: 99 VPMVAEVKEEICIGCTRCFKVCPTDAIM 126 >gi|225012610|ref|ZP_03703045.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Flavobacteria bacterium MS024-2A] gi|225003143|gb|EEG41118.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Flavobacteria bacterium MS024-2A] Length = 504 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 18/53 (33%), Gaps = 9/53 (16%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 +CI+C C C R +I C+ CG+C CP Sbjct: 434 QCISCGNCSTYCEMGIDVRAYAQRGE---------NIVRSSCVGCGVCSAVCP 477 >gi|126700296|ref|YP_001089193.1| pyruvate-flavodoxin oxidoreductase [Clostridium difficile 630] gi|254976274|ref|ZP_05272746.1| pyruvate-flavodoxin oxidoreductase [Clostridium difficile QCD-66c26] gi|255093660|ref|ZP_05323138.1| pyruvate-flavodoxin oxidoreductase [Clostridium difficile CIP 107932] gi|255315409|ref|ZP_05356992.1| pyruvate-flavodoxin oxidoreductase [Clostridium difficile QCD-76w55] gi|255651191|ref|ZP_05398093.1| pyruvate-flavodoxin oxidoreductase [Clostridium difficile QCD-37x79] gi|260684256|ref|YP_003215541.1| pyruvate-flavodoxin oxidoreductase [Clostridium difficile CD196] gi|260687915|ref|YP_003219049.1| pyruvate-flavodoxin oxidoreductase [Clostridium difficile R20291] gi|115251733|emb|CAJ69568.1| Pyruvate-ferredoxin oxidoreductase [Clostridium difficile] gi|260210419|emb|CBA64837.1| pyruvate-flavodoxin oxidoreductase [Clostridium difficile CD196] gi|260213932|emb|CBE05995.1| pyruvate-flavodoxin oxidoreductase [Clostridium difficile R20291] Length = 1179 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 18/81 (22%) Query: 61 ERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRYDID--MIKCI 104 + CI C C ICP A + ++Y I + C Sbjct: 687 DNCIQCNQCSFICPHACIRPVLVTEEELANAPEGFEAKKALGKGLEGLKYRIQVSPLDCT 746 Query: 105 YCGLCQEACP--VDAIVEGPN 123 CG C + CP A+V P Sbjct: 747 GCGNCADICPAKEKALVMKPI 767 >gi|50306045|ref|XP_452984.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49642117|emb|CAH01835.1| KLLA0C17556p [Kluyveromyces lactis] Length = 607 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 23/56 (41%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 K C C +++G C + + I CI CG+C + CP DAI Sbjct: 19 KKCRQECKRSCPVVKTGKLCIEVMPTSKIAFISENLCIGCGICVKKCPFDAIQIIN 74 >gi|78221981|ref|YP_383728.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Geobacter metallireducens GS-15] gi|78193236|gb|ABB31003.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Geobacter metallireducens GS-15] Length = 368 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 32/122 (26%), Gaps = 27/122 (22%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + F L+ +T +H+ E C C LC C Sbjct: 159 LTGFGGALKNLGMGCSTR----------EGKMTQHSTVAPKIAETYCTGCGLCLKACAHD 208 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 AI I G +D C C C CP A+ N +L Sbjct: 209 AIAIIEGKA-----------KLDPAHCAGCSRCITVCPTKAVQIQWNEA------ADLVM 251 Query: 137 DK 138 K Sbjct: 252 KK 253 >gi|317492085|ref|ZP_07950516.1| electron transport complex [Enterobacteriaceae bacterium 9_2_54FAA] gi|316919968|gb|EFV41296.1| electron transport complex [Enterobacteriaceae bacterium 9_2_54FAA] Length = 202 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 25/76 (32%), Gaps = 10/76 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 EE CI C C CP AI + + + C C LC CP D I Sbjct: 113 DEENCIGCTKCIQACPVDAIVGAT----------RAMHTVVSDLCTGCNLCVAPCPTDCI 162 Query: 119 VEGPNFEFATETRQEL 134 P + +L Sbjct: 163 TLVPVPTTTANWKWDL 178 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C C +ACPVDAI Sbjct: 112 IDEENCIGCTKCIQACPVDAI 132 >gi|317057598|ref|YP_004106065.1| NADH dehydrogenase (quinone) [Ruminococcus albus 7] gi|315449867|gb|ADU23431.1| NADH dehydrogenase (quinone) [Ruminococcus albus 7] Length = 630 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 10/66 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L +Y ++C C LC CPA AIT + ID KCI CG+C Sbjct: 572 LLQYEIIADKCKGCTLCARNCPANAITGT----------VKNPHVIDTTKCIKCGVCMNN 621 Query: 113 CPVDAI 118 C AI Sbjct: 622 CKFGAI 627 Score = 38.5 bits (88), Expect = 0.28, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 18/43 (41%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 I+ + ++Y+I KC C LC CP +AI Sbjct: 558 HIKEKKCPAGVCKNLLQYEIIADKCKGCTLCARNCPANAITGT 600 >gi|256810301|ref|YP_003127670.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus fervens AG86] gi|256793501|gb|ACV24170.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus fervens AG86] Length = 405 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 41/114 (35%), Gaps = 14/114 (12%) Query: 9 SFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKL 68 S +L EF + + K R+R + +P RCI+C+ Sbjct: 4 SLWYLYEFAR------KKWIKKFVDAKSEESSYIPPERYRKVPPVVEFPE---RCISCEA 54 Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ CPA AI + + + ID CI C C EACP + Sbjct: 55 CKESCPAFAIELIYNESYNKKLPK-----IDEGSCIACANCVEACPTGVLEIDK 103 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 9/65 (13%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 Y E+ CI C++C+ +C A+ I + I C+ CG C+ C Sbjct: 270 ICYVIDEDLCIGCRICQKVCHVNAVKISKEIKLPY---------IVPELCVACGACEREC 320 Query: 114 PVDAI 118 PV AI Sbjct: 321 PVGAI 325 Score = 40.9 bits (94), Expect = 0.054, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 3/62 (4%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C+ C LC +CP AI R+ + Y ID CI C +CQ+ C V+A+ Sbjct: 241 ECVKCGLCIEVCPTTAIRTH---VPIIPKRKDICYVIDEDLCIGCRICQKVCHVNAVKIS 297 Query: 122 PN 123 Sbjct: 298 KE 299 Score = 40.9 bits (94), Expect = 0.065, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 4/64 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDG----TRRTVRYDIDMIKCIYCGLCQEACP 114 E CIAC C CP + I+ +G + ID C+ CG C+ ACP Sbjct: 80 DEGSCIACANCVEACPTGVLEIDKHRAETEGLFFDIPKYTNLIIDEEVCVRCGNCERACP 139 Query: 115 VDAI 118 V+ I Sbjct: 140 VNVI 143 Score = 37.4 bits (85), Expect = 0.73, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 27/75 (36%), Gaps = 11/75 (14%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 + T F EE C+ C CE CP I R+ RY ID Sbjct: 105 RAETEGLFFDIPKYTNLIIDEEVCVRCGNCERACPVNVIK-----------RKEGRYVID 153 Query: 100 MIKCIYCGLCQEACP 114 CI C C +ACP Sbjct: 154 RASCISCKECIKACP 168 Score = 37.0 bits (84), Expect = 0.90, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 16/56 (28%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C C+ +C + E C+ CGLC E CP AI Sbjct: 218 CITCGTCKDVCIGEIDLKEKKVVE----------------CVKCGLCIEVCPTTAI 257 >gi|239906643|ref|YP_002953384.1| pyruvate-flavodoxin oxidoreductase [Desulfovibrio magneticus RS-1] gi|239796509|dbj|BAH75498.1| pyruvate-flavodoxin oxidoreductase [Desulfovibrio magneticus RS-1] Length = 1213 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 27/90 (30%), Gaps = 18/90 (20%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV---------------- 94 A+ +E CI C C +CP I Sbjct: 677 VAINIPHWIKENCIQCNQCSYVCPHATIRPFLADEAEMAGAPASFDTLPATGKELKGLAY 736 Query: 95 RYDIDMIKCIYCGLCQEACPV--DAIVEGP 122 R + + C+ CG C + CP A+V P Sbjct: 737 RMQVFPMDCMGCGSCADVCPAKQKALVMKP 766 >gi|255518074|ref|ZP_05385750.1| pyruvate-flavodoxin oxidoreductase [Clostridium difficile QCD-97b34] Length = 1179 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 18/81 (22%) Query: 61 ERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRYDID--MIKCI 104 + CI C C ICP A + ++Y I + C Sbjct: 687 DNCIQCNQCSFICPHACIRPVLVTEEELANAPEGFEAKKALGKGLEGLKYRIQVSPLDCT 746 Query: 105 YCGLCQEACP--VDAIVEGPN 123 CG C + CP A+V P Sbjct: 747 GCGNCADICPAKEKALVMKPI 767 >gi|222530184|ref|YP_002574066.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Caldicellulosiruptor bescii DSM 6725] gi|222457031|gb|ACM61293.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Caldicellulosiruptor bescii DSM 6725] Length = 373 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 10/57 (17%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 +C+ C +C C AIT+ + ID KC+ CG C C A Sbjct: 194 SKCVGCGMCVKSCAQLAITLNEKKKAV----------IDYEKCVGCGQCVAVCQFGA 240 Score = 34.3 bits (77), Expect = 5.1, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 4/60 (6%) Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVR----YDIDMIKCIYCGLCQEACPVDAIVE 120 K E AI G + + I KC+ CG+C ++C AI Sbjct: 154 HFKGHEMTGFGGAIKNIGMGSGSRGGKLFMHSSSKPVIKTSKCVGCGMCVKSCAQLAITL 213 >gi|187438956|gb|ACD10930.1| [FeFe]-hydrogenase [Blastocystis sp. NandII] Length = 758 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 3/68 (4%) Query: 57 PNGEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMI-KCIYCGLCQEAC 113 RC+ CK C C +E+ P+ Y + +CI CG C C Sbjct: 151 HRDMSRCVDCKRCARACSELQGMNVLENNPQEGGFPVVPTGYHLLKDTECISCGQCNVVC 210 Query: 114 PVDAIVEG 121 P AIVE Sbjct: 211 PTGAIVEQ 218 >gi|167750764|ref|ZP_02422891.1| hypothetical protein EUBSIR_01742 [Eubacterium siraeum DSM 15702] gi|167656199|gb|EDS00329.1| hypothetical protein EUBSIR_01742 [Eubacterium siraeum DSM 15702] Length = 597 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 32/96 (33%), Gaps = 15/96 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 LRY FK + + +K L Y + +C C C CP AI+ Sbjct: 514 TLRY-FKDEYIAHVKDKKCPAGVC----QDLLTYKIIDLKCKGCTACARGCPVGAISGTV 568 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ID KCI CG C C AI Sbjct: 569 KQPHS----------IDTAKCIKCGACMAKCKFGAI 594 Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats. Identities = 11/51 (21%), Positives = 16/51 (31%) Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 ++ + + Y I +KC C C CPV AI Sbjct: 517 YFKDEYIAHVKDKKCPAGVCQDLLTYKIIDLKCKGCTACARGCPVGAISGT 567 >gi|218779004|ref|YP_002430322.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfatibacillum alkenivorans AK-01] gi|218760388|gb|ACL02854.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfatibacillum alkenivorans AK-01] Length = 403 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 34/86 (39%), Gaps = 12/86 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC-PVDA 117 ++CI C C ICP +A+++ I+ +CI CGLC C A Sbjct: 291 DADKCIGCNQCVEICPMEALSLVDDKAV-----------INHTRCIGCGLCVPKCGKAKA 339 Query: 118 IVEGPNFEFATETRQELYYDKERLLN 143 I + ++ L Y ER+ Sbjct: 340 ISLKERYGHKPPSKDVLAYAAERIEE 365 >gi|156938165|ref|YP_001435961.1| nitrate reductase, subunit G [Ignicoccus hospitalis KIN4/I] gi|156567149|gb|ABU82554.1| putative nitrate reductase, subunit G [Ignicoccus hospitalis KIN4/I] Length = 320 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 25/73 (34%), Gaps = 3/73 (4%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR---TVRYDIDMIKCIYCGLCQEA 112 N +C+ C LC C G + V YD+ C C C E Sbjct: 111 DENFYSKCVRCGLCYTACTHMNYHTLKLRGLEKGLKYVGTPVVYDVMNYPCELCMRCTEV 170 Query: 113 CPVDAIVEGPNFE 125 CP DA+ E E Sbjct: 171 CPTDALKEVKPSE 183 Score = 37.4 bits (85), Expect = 0.63, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 30/89 (33%), Gaps = 9/89 (10%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD--AIVEGP- 122 CK C + CP S V + +C CGLC ACPV AI P Sbjct: 204 CKSCASACPRG-----SEVFDFHFNEWGVHTRVKGEECNGCGLCVRACPVPGAAIHVLPK 258 Query: 123 -NFEFATETRQELYYDKERLLNNGDRWES 150 +E + + + L + E Sbjct: 259 EEYEKRIKNFKNTGMTYDEYLELIKKAEE 287 >gi|254361779|ref|ZP_04977914.1| NADH dehydrogenase (ubiquinone) [Mannheimia haemolytica PHL213] gi|261494020|ref|ZP_05990523.1| electron transport complex protein RnfC [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496221|ref|ZP_05992627.1| electron transport complex protein RnfC [Mannheimia haemolytica serotype A2 str. OVINE] gi|153093314|gb|EDN74310.1| NADH dehydrogenase (ubiquinone) [Mannheimia haemolytica PHL213] gi|261308173|gb|EEY09470.1| electron transport complex protein RnfC [Mannheimia haemolytica serotype A2 str. OVINE] gi|261310186|gb|EEY11386.1| electron transport complex protein RnfC [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 764 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 34/107 (31%), Gaps = 3/107 (2%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E CI C C CP + + + + CI CG+C CP Sbjct: 379 PEPERSCIRCSSCSDACPVG-LLPQQLYWFARAEDHDKSKEYHLDACIECGVCAYVCP-S 436 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 I F +E+ + R+E+ R + + R Sbjct: 437 YIPLIQYFRQEKAKIEEIEEKARKAEEAKIRFEAREAR-LQKERDAR 482 >gi|153215071|ref|ZP_01949788.1| RnfC-related protein [Vibrio cholerae 1587] gi|124114934|gb|EAY33754.1| RnfC-related protein [Vibrio cholerae 1587] Length = 505 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 29/105 (27%), Gaps = 12/105 (11%) Query: 13 LKEFVGA---FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC 69 L + L + P K + + L N CI C C Sbjct: 333 LPRLIMGGPMMGFTLPH-------AQVPITKTANCILAPTRNELTSSDNEMA-CIRCGQC 384 Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 CP + + ++++ CI CG C CP Sbjct: 385 AEACPVS-LLPQQLQWHAKAEDFDKCEELNLKDCIECGACAYVCP 428 Score = 35.5 bits (80), Expect = 2.5, Method: Composition-based stats. Identities = 10/13 (76%), Positives = 10/13 (76%) Query: 103 CIYCGLCQEACPV 115 CI CG C EACPV Sbjct: 378 CIRCGQCAEACPV 390 >gi|123454890|ref|XP_001315194.1| dihydroorotate dehydrogenase family protein [Trichomonas vaginalis G3] gi|121897863|gb|EAY02971.1| dihydroorotate dehydrogenase family protein [Trichomonas vaginalis G3] Length = 365 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 27/81 (33%), Gaps = 11/81 (13%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 E + L E+C+ C C C +A+ +E G G Sbjct: 292 HEVIGLGLKHPPLAQLNPPKIEAEKCVGCGTCVTSCLYEALQLEDGIAKVTG-------- 343 Query: 98 IDMIKCIYCGLCQEACPVDAI 118 KC CGLC CP AI Sbjct: 344 ---EKCFRCGLCYTRCPTGAI 361 >gi|320353709|ref|YP_004195048.1| Fe-S cluster domain-containing protein [Desulfobulbus propionicus DSM 2032] gi|320122211|gb|ADW17757.1| Fe-S cluster domain protein [Desulfobulbus propionicus DSM 2032] Length = 579 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 11/67 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + C C C CP +AI ++ I C+YCG+C CP Sbjct: 8 YTEKHECQDCYKCVRQCPVKAIRVQDAYA-----------TIVDEMCVYCGICVSICPNT 56 Query: 117 AIVEGPN 123 A + Sbjct: 57 AKHVRND 63 >gi|282165438|ref|YP_003357823.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit A [Methanocella paludicola SANAE] gi|282157752|dbj|BAI62840.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit A [Methanocella paludicola SANAE] Length = 659 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 6/64 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ C C +C ++CP +AIT+ DG RR D C CG C ACP AI Sbjct: 582 DDDLCSGCGVCGSLCPYKAITLNE---IEDGKRRASVND---AMCKGCGTCGAACPAKAI 635 Query: 119 VEGP 122 Sbjct: 636 TMQH 639 Score = 34.3 bits (77), Expect = 5.7, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 19/59 (32%), Gaps = 7/59 (11%) Query: 62 RCIACKLCEAICPAQAIT-------IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 C C C A+CP ++Y +D CI C LC + C Sbjct: 248 DCNGCGDCAAVCPVTKGNEFDLGLGPRKAIYVPFPQAVPLKYTVDFNSCIKCELCVKKC 306 >gi|169831077|ref|YP_001717059.1| aldo/keto reductase [Candidatus Desulforudis audaxviator MP104C] gi|169637921|gb|ACA59427.1| aldo/keto reductase [Candidatus Desulforudis audaxviator MP104C] Length = 316 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 20/56 (35%), Gaps = 10/56 (17%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+AC C C A A+ I+ R C CG C CP AI Sbjct: 268 CLACGECVRRCSAGALYIKDDGRAAA----------RQELCNLCGYCASVCPEFAI 313 >gi|166031919|ref|ZP_02234748.1| hypothetical protein DORFOR_01620 [Dorea formicigenerans ATCC 27755] gi|166028372|gb|EDR47129.1| hypothetical protein DORFOR_01620 [Dorea formicigenerans ATCC 27755] Length = 263 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 27/89 (30%), Gaps = 11/89 (12%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 K P++ + + CI CK+CE C A+ + Sbjct: 185 RKLIEIVPYDMKHLVKCNSKDKGKDVMKACKVGCIGCKMCEKACQFDAVKVLDNVAH--- 241 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ID KC CG C CP I Sbjct: 242 --------IDPEKCTGCGACAAKCPKKVI 262 >gi|163751796|ref|ZP_02159013.1| electron transport complex protein RnfB [Shewanella benthica KT99] gi|161328360|gb|EDP99520.1| electron transport complex protein RnfB [Shewanella benthica KT99] Length = 189 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 24/66 (36%), Gaps = 10/66 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E+ CI C C CP AI + + + C C LC E CPVD Sbjct: 108 YIREDECIGCTKCIQACPVDAILGTGK----------LMHTVITDYCTGCDLCVEPCPVD 157 Query: 117 AIVEGP 122 I P Sbjct: 158 CIDMLP 163 >gi|110667103|ref|YP_656914.1| NADH:ubiquinone oxidoreductase / formate dehydrogenase alpha subunit I [Haloquadratum walsbyi DSM 16790] gi|109624850|emb|CAJ51259.1| NADH:ubiquinone oxidoreductase / formate dehydrogenase alpha subunit I [Haloquadratum walsbyi DSM 16790] Length = 347 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 4/68 (5%) Query: 57 PNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 +CI C C C A + +E + + ++ C+ CG C Sbjct: 192 QIDRNKCILCNRCVEACNDVQVAGVLQMEGSGQDTRIGFQNDSPTMEDSTCVSCGHCATV 251 Query: 113 CPVDAIVE 120 CP ++VE Sbjct: 252 CPTGSLVE 259 >gi|328952559|ref|YP_004369893.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfobacca acetoxidans DSM 11109] gi|328452883|gb|AEB08712.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfobacca acetoxidans DSM 11109] Length = 1003 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 30/94 (31%), Gaps = 11/94 (11%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE-------SGPRCHDGTRRTVRYDI 98 FR +C C C +CP +A+ + + I Sbjct: 96 HFRAVLNNYPRYLDPVKCTGCGDCRKVCPVRAVNEFNAGLDLREATYIRYPQAVPLAFAI 155 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 D CI CGLC + C AI N+ R+ Sbjct: 156 DRQVCIGCGLCGQVCLAGAI----NYLDTARQRE 185 Score = 37.8 bits (86), Expect = 0.51, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 21/77 (27%), Gaps = 10/77 (12%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 R + +RC AC +C CP I I+ C Sbjct: 923 DIRQTISGVIAYVEPDRCAACLVCVKTCPFGVPRINEDNVSE----------INTALCQG 972 Query: 106 CGLCQEACPVDAIVEGP 122 CG C CP I Sbjct: 973 CGTCASECPAKVIQLAH 989 >gi|325929561|ref|ZP_08190675.1| electron transport complex, RnfABCDGE type, B subunit [Xanthomonas perforans 91-118] gi|325540071|gb|EGD11699.1| electron transport complex, RnfABCDGE type, B subunit [Xanthomonas perforans 91-118] Length = 142 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 31/85 (36%), Gaps = 11/85 (12%) Query: 39 EKGSTSPRFRGEHAL-RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 R RG H L + E CI C C CP AI G + + Sbjct: 66 VPARPYDRSRGAHKLPQVAWIVEADCIGCTKCIQACPVDAIV---------GGAKHMHTV 116 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 I + C C LC ACPVD I P Sbjct: 117 IAPL-CTGCELCLPACPVDCIELHP 140 >gi|291278693|ref|YP_003495528.1| 4Fe-4S ferredoxin [Deferribacter desulfuricans SSM1] gi|290753395|dbj|BAI79772.1| 4Fe-4S ferredoxin [Deferribacter desulfuricans SSM1] Length = 353 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 13/65 (20%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+C AC LC+ C + AITI +Y KC C C CP AI Sbjct: 190 HTEKCTACGLCKDACASDAITI-------------SKYAEITEKCTGCARCIAVCPQGAI 236 Query: 119 VEGPN 123 + Sbjct: 237 GINWD 241 >gi|257783898|ref|YP_003179115.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Atopobium parvulum DSM 20469] gi|257472405|gb|ACV50524.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Atopobium parvulum DSM 20469] Length = 328 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 15/66 (22%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + +Y + C++C C C ++ CI CG C + Sbjct: 236 ILQYRVDKNTCVSCGKCARTCKMDVDITKNNAALE---------------CIRCGECIKV 280 Query: 113 CPVDAI 118 CPV AI Sbjct: 281 CPVHAI 286 >gi|322419390|ref|YP_004198613.1| electron transfer flavoprotein alpha/beta-subunit [Geobacter sp. M18] gi|320125777|gb|ADW13337.1| Electron transfer flavoprotein alpha/beta-subunit [Geobacter sp. M18] Length = 437 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 22/105 (20%) Query: 62 RCIACK-LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 +CIAC C+++CP + + I+ KCI C C + CP A+ Sbjct: 20 KCIACGARCQSVCPVNGVEMSEQGEP----------IIEAEKCIGCVKCVKVCPAGALEM 69 Query: 121 GPNFEFATETRQEL--YYDKERLLNNGDRWESEIVRNIVTDSPYR 163 T +EL E+ + G+ + E + S Y+ Sbjct: 70 -------FYTPEELAIIAGFEK--HGGEEVDDEELERRKKISAYK 105 >gi|256810303|ref|YP_003127672.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus fervens AG86] gi|256793503|gb|ACV24172.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus fervens AG86] Length = 247 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 10/71 (14%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 + L+ Y E +CI C +C CP AI + D+++ C+ CG Sbjct: 116 HRKIRLKNYELDESKCIKCGICARYCPTDAIKVVIRKSI----------DVNLDSCMGCG 165 Query: 108 LCQEACPVDAI 118 C E CP I Sbjct: 166 ACAEVCPKKCI 176 Score = 42.0 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 22/74 (29%), Positives = 31/74 (41%), Gaps = 15/74 (20%) Query: 60 EERCIACKLCEAICPAQAITIESGPR---------------CHDGTRRTVRYDIDMIKCI 104 ++C+ C++C CP AI + G R Y++D KCI Sbjct: 73 HDKCVKCEICAQTCPVGAIYVIEGKAEINNDEVNYEIKNKVIPHRKIRLKNYELDESKCI 132 Query: 105 YCGLCQEACPVDAI 118 CG+C CP DAI Sbjct: 133 KCGICARYCPTDAI 146 Score = 41.6 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 11/67 (16%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 R ++ C+ C +C CP AI E I+ KCI CG C + C Sbjct: 189 RDIEVNKDLCVGCFVCIEECPINAIEQEGDKV-----------KINKDKCILCGRCADVC 237 Query: 114 PVDAIVE 120 P +AI Sbjct: 238 PANAIDM 244 Score = 37.8 bits (86), Expect = 0.52, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C+ C C +CP + I +ES TR +++ C+ C +C E CP++AI Sbjct: 157 NLDSCMGCGACAEVCPKKCIRVESDIGEVIKTRDI---EVNKDLCVGCFVCIEECPINAI 213 Score = 35.5 bits (80), Expect = 2.3, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 9/63 (14%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E +C+ C LC CP AI + KC+ C +C + CPV Sbjct: 39 YVNETKCVRCNLCYKECPVDAIEKAKIKKPAKIIH---------DKCVKCEICAQTCPVG 89 Query: 117 AIV 119 AI Sbjct: 90 AIY 92 >gi|242278076|ref|YP_002990205.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio salexigens DSM 2638] gi|242120970|gb|ACS78666.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio salexigens DSM 2638] Length = 652 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 7/64 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +RCI C C + CP AI R + D+ C CG+C CP AI Sbjct: 580 DIKRCIGCGKCISTCPFGAIK-------EIDFRGQPKADVIETICQGCGICTSTCPQGAI 632 Query: 119 VEGP 122 Sbjct: 633 QLQH 636 Score = 40.9 bits (94), Expect = 0.056, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 13/75 (17%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGP--------RCHDGTRRTVRYDIDMIKCIY--- 105 ++C C +C CP++ + ID CI Sbjct: 236 YVDWDKCTGCGICMEKCPSKKADNPFDEELGKTTAINIPFPQAIPKKAVIDPNFCIKIKR 295 Query: 106 --CGLCQEACPVDAI 118 CG+C + CP +AI Sbjct: 296 DKCGVCAKVCPSEAI 310 >gi|45358013|ref|NP_987570.1| ferredoxin [Methanococcus maripaludis S2] gi|44920770|emb|CAF30006.1| ferredoxin [Methanococcus maripaludis S2] Length = 285 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 24/62 (38%), Gaps = 11/62 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E C C C +C AI+I + C CGLC ACPV AI Sbjct: 66 DKELCTNCGECSKLCKFNAISITPN-----------NSTVFEKLCHDCGLCYIACPVQAI 114 Query: 119 VE 120 E Sbjct: 115 SE 116 Score = 34.3 bits (77), Expect = 5.1, Method: Composition-based stats. Identities = 12/37 (32%), Positives = 14/37 (37%) Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 ID C CG C + C +AI PN E Sbjct: 61 KVPKIDKELCTNCGECSKLCKFNAISITPNNSTVFEK 97 >gi|295107352|emb|CBL04895.1| Uncharacterized conserved protein [Gordonibacter pamelaeae 7-10-1-b] Length = 208 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 26/75 (34%), Gaps = 10/75 (13%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103 G R + C C C A CP I R I+ C Sbjct: 141 PFALGGGPVAREGFTVSDACTGCGACFAACPQGCIAPRPDGRAF----------IEQQAC 190 Query: 104 IYCGLCQEACPVDAI 118 ++CG C+E CP DAI Sbjct: 191 LHCGRCREVCPSDAI 205 >gi|289596483|ref|YP_003483179.1| formate dehydrogenase, alpha subunit [Aciduliprofundum boonei T469] gi|289534270|gb|ADD08617.1| formate dehydrogenase, alpha subunit [Aciduliprofundum boonei T469] Length = 879 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 28/95 (29%), Gaps = 1/95 (1%) Query: 25 RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84 + F EK + PN C C ++ + + G Sbjct: 103 KELFSKYGIEIKSDEKREAPDL-VDNPFISFNPNACVSCFRCVQACSLVKENHVLVREGR 161 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + + C +CG C +ACP A++ Sbjct: 162 GAETRIVAGINEALKDAGCAFCGACVDACPTGALM 196 >gi|253564715|ref|ZP_04842171.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Bacteroides sp. 3_2_5] gi|251946180|gb|EES86557.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Bacteroides sp. 3_2_5] Length = 387 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 6/56 (10%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 C C C + C AI ++ + + I+ +CI CGLC + CPV Sbjct: 8 YDCCGCTACTSACNRGAIIMQEDEQG------FLYPHINTTQCIDCGLCNKVCPVF 57 >gi|239624057|ref|ZP_04667088.1| 4Fe-4S ferredoxin [Clostridiales bacterium 1_7_47_FAA] gi|239522088|gb|EEQ61954.1| 4Fe-4S ferredoxin [Clostridiales bacterium 1_7_47FAA] Length = 366 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 25/67 (37%), Gaps = 11/67 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 C+ C C C AIT+ESG ID C CG C CP+D Sbjct: 189 HVDAGLCVGCGACVRQCAHGAITLESGKAS-----------IDTAVCAGCGRCIGTCPMD 237 Query: 117 AIVEGPN 123 A+ N Sbjct: 238 AVAADNN 244 >gi|224368795|ref|YP_002602956.1| FdhA5 [Desulfobacterium autotrophicum HRM2] gi|223691511|gb|ACN14794.1| FdhA5 [Desulfobacterium autotrophicum HRM2] Length = 921 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 32/104 (30%), Gaps = 10/104 (9%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC---PAQAI 78 L +Y KA + P + +R RCI C C C Sbjct: 138 LAFKYQVKA---VGIPLAECKFPMETGNPLIVR----DFSRCILCGRCVQACRQVQVNNA 190 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + +C++CG C +ACPV A+ E Sbjct: 191 IDFGYRGADAKIVAGTDVSLKDSECVFCGECIQACPVGALFEKK 234 >gi|204929685|ref|ZP_03220759.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204321404|gb|EDZ06604.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|322613728|gb|EFY10667.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619529|gb|EFY16405.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625034|gb|EFY21863.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322629523|gb|EFY26299.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634046|gb|EFY30783.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635516|gb|EFY32227.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322639808|gb|EFY36487.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322644430|gb|EFY40971.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322648575|gb|EFY45024.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322655205|gb|EFY51514.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322658252|gb|EFY54518.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322664253|gb|EFY60450.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322669420|gb|EFY65569.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322673147|gb|EFY69253.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322676539|gb|EFY72607.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683289|gb|EFY79303.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322685825|gb|EFY81818.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|323194768|gb|EFZ79956.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323199544|gb|EFZ84635.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204681|gb|EFZ89679.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323208129|gb|EFZ93074.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323210147|gb|EFZ95048.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323217015|gb|EGA01737.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323221813|gb|EGA06217.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323225008|gb|EGA09263.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323229297|gb|EGA13421.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235388|gb|EGA19472.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323237426|gb|EGA21489.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323245180|gb|EGA29181.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248883|gb|EGA32809.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323253170|gb|EGA37002.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323255404|gb|EGA39172.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262037|gb|EGA45602.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323266348|gb|EGA49836.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323269821|gb|EGA53271.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] Length = 287 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 22/73 (30%), Gaps = 11/73 (15%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C C C CP I + I +C CG C CP A+ Sbjct: 190 PQECRMCGACWRSCPENVIQFDDN-----------TLTIAAARCTGCGGCAAVCPHQALR 238 Query: 120 EGPNFEFATETRQ 132 + E A+ Sbjct: 239 LRFDVEPASTRHS 251 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 11/50 (22%) Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C +CPAQA ++ G ID +CI CG C CPVDAI Sbjct: 29 CADVCPAQAFSLAQGQVS-----------IDTTRCIACGDCLFVCPVDAI 67 >gi|148283121|ref|YP_431142.2| formate dehydrogenase subunit alpha [Moorella thermoacetica ATCC 39073] Length = 899 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 16/102 (15%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP------AQAITIESGPRCHDGT 90 P ++ +R Y +CI C C C + + T Sbjct: 124 PVKREELPVLKENPFIVRDY----NKCIVCGRCVRACQEVQVQRVVDLVGKGSAARVGAT 179 Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVE------GPNFEF 126 + ++ C++CG C + CPV A+ E G +EF Sbjct: 180 KAGAEVSLEEGGCVFCGNCVQVCPVGALTEKAGLGQGREWEF 221 Score = 35.1 bits (79), Expect = 3.2, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 18/81 (22%), Gaps = 8/81 (9%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI-- 98 R E C+ C+ +R + Sbjct: 76 TPVIEEMRKGIIEMLLSLHPEDCLTCEKAGNCQLQDCAYTYGVKHGELPVKREELPVLKE 135 Query: 99 ------DMIKCIYCGLCQEAC 113 D KCI CG C AC Sbjct: 136 NPFIVRDYNKCIVCGRCVRAC 156 Score = 33.9 bits (76), Expect = 7.5, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 4/46 (8%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 C+ C C +CP A+T + G R + C YCG+ Sbjct: 192 CVFCGNCVQVCPVGALT----EKAGLGQGREWEFKKVRSICSYCGV 233 >gi|146386149|gb|ABC20599.2| formate dehydrogenase alpha subunit [Moorella thermoacetica ATCC 39073] Length = 900 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 16/102 (15%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP------AQAITIESGPRCHDGT 90 P ++ +R Y +CI C C C + + T Sbjct: 124 PVKREELPVLKENPFIVRDY----NKCIVCGRCVRACQEVQVQRVVDLVGKGSAARVGAT 179 Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVE------GPNFEF 126 + ++ C++CG C + CPV A+ E G +EF Sbjct: 180 KAGAEVSLEEGGCVFCGNCVQVCPVGALTEKAGLGQGREWEF 221 Score = 35.1 bits (79), Expect = 3.2, Method: Composition-based stats. Identities = 14/81 (17%), Positives = 18/81 (22%), Gaps = 8/81 (9%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI-- 98 R E C+ C+ +R + Sbjct: 76 TPVIEEMRKGIIEMLLSLHPEDCLTCEKAGNCQLQDCAYTYGVKHGELPVKREELPVLKE 135 Query: 99 ------DMIKCIYCGLCQEAC 113 D KCI CG C AC Sbjct: 136 NPFIVRDYNKCIVCGRCVRAC 156 Score = 33.9 bits (76), Expect = 7.5, Method: Composition-based stats. Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 4/46 (8%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 C+ C C +CP A+T + G R + C YCG+ Sbjct: 192 CVFCGNCVQVCPVGALT----EKAGLGQGREWEFKKVRSICSYCGV 233 >gi|323476933|gb|ADX82171.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus islandicus HVE10/4] Length = 456 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 17/92 (18%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 L Y NG + AC +CE CP AI ++ + +ID IKC CGL Sbjct: 109 KPIYLSEYCNGLYK--ACNVCEFSCPYNAIKVD----------KKTGVNIDYIKCTSCGL 156 Query: 109 CQEACPVDAIVE-----GPNFEFATETRQELY 135 C +CPV AI FE A ++ Sbjct: 157 CVASCPVSAIQFPSLSQNSIFELAKVKGEKRI 188 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 22/68 (32%), Gaps = 7/68 (10%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 + L RC C+ C CP A+ + D D +CI C LC Sbjct: 290 PYILFEVSIDNNRCTLCESCVNWCPTSALKLRRDSGVE-------EIDFDPKRCIGCNLC 342 Query: 110 QEACPVDA 117 CP Sbjct: 343 VNVCPESC 350 >gi|310659230|ref|YP_003936951.1| indolepyruvate ferredoxin oxidoreductase [Clostridium sticklandii DSM 519] gi|308826008|emb|CBH22046.1| Indolepyruvate ferredoxin oxidoreductase [Clostridium sticklandii] Length = 600 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 6/64 (9%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + CI CK C + ++ ID +C+ C +C + CP Sbjct: 530 HFYVDPNICIGCKTC---IKTNCPPLRMKKYEGIEKLKSS---IDKNQCVGCSICAQVCP 583 Query: 115 VDAI 118 V+AI Sbjct: 584 VNAI 587 >gi|291280537|ref|YP_003497372.1| 4Fe-4S ferredoxin [Deferribacter desulfuricans SSM1] gi|290755239|dbj|BAI81616.1| 4Fe-4S ferredoxin [Deferribacter desulfuricans SSM1] Length = 56 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 25/64 (39%), Gaps = 11/64 (17%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C C CE CP AI+ G R ID C CG C E CP Sbjct: 1 MAHVITDECTNCGACEDECPVGAISEGDGKRV-----------IDPDTCTDCGACAEVCP 49 Query: 115 VDAI 118 VDAI Sbjct: 50 VDAI 53 >gi|282856871|ref|ZP_06266129.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pyramidobacter piscolens W5455] gi|282585289|gb|EFB90599.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pyramidobacter piscolens W5455] Length = 298 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 36/91 (39%), Gaps = 18/91 (19%) Query: 28 FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH 87 F+ P F AL RY E++C+AC C A+CP Sbjct: 207 FRPFCKYLCP---LGAFYGFFNRIALFRYGFDEKKCVACGRCAAVCP------------- 250 Query: 88 DGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + + + +CI CG C ACPV+A+ Sbjct: 251 --MTLKLPHGTNGAECIRCGRCVHACPVEAL 279 >gi|269102198|ref|ZP_06154895.1| electron transport complex protein RnfB [Photobacterium damselae subsp. damselae CIP 102761] gi|268162096|gb|EEZ40592.1| electron transport complex protein RnfB [Photobacterium damselae subsp. damselae CIP 102761] Length = 192 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 25/78 (32%), Gaps = 10/78 (12%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E+ CI C C CP AI + + + +C C LC CP D Sbjct: 107 FIHEDMCIGCTKCIQACPVDAIVGGTK----------AIHTVIKDECTGCKLCVAPCPTD 156 Query: 117 AIVEGPNFEFATETRQEL 134 I E + L Sbjct: 157 CIEMITVEETPDTWKWNL 174 >gi|256828953|ref|YP_003157681.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfomicrobium baculatum DSM 4028] gi|256578129|gb|ACU89265.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfomicrobium baculatum DSM 4028] Length = 519 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 5/73 (6%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV---DAIVE 120 C C CP +A+ + P + R V ++ C+ CG C+ ACP AI Sbjct: 433 TNCGACSEHCPTKAVRMVPYPNALN--RPLVIPEVHADYCVGCGACEHACPTKPFKAICV 490 Query: 121 GPNFEFATETRQE 133 N AT + E Sbjct: 491 DGNPVHATSKKPE 503 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 13/66 (19%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +RC C CE +C A I +E R +D +C+ C C ACP A+ Sbjct: 229 DHDRCTKCGRCERVCKAGCIDLE-------------RMRVDTGRCVACYNCLAACPAGAM 275 Query: 119 VEGPNF 124 + Sbjct: 276 HFENRW 281 Score = 37.0 bits (84), Expect = 0.79, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY-CGLCQEACPVDAI 118 C AC LC ++CP++ ++ G R + C Y C LC + CP AI Sbjct: 348 CTACHLCVSVCPSRVLSPSILEFGPSGIM-QPRLNYRASYCNYECTLCTQVCPTGAI 403 >gi|255524302|ref|ZP_05391260.1| hydrogenase, Fe-only [Clostridium carboxidivorans P7] gi|296185259|ref|ZP_06853669.1| ferredoxin hydrogenase [Clostridium carboxidivorans P7] gi|255511985|gb|EET88267.1| hydrogenase, Fe-only [Clostridium carboxidivorans P7] gi|296050093|gb|EFG89517.1| ferredoxin hydrogenase [Clostridium carboxidivorans P7] Length = 580 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 3/70 (4%) Query: 57 PNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEAC 113 ++CI C+ CE +C Q + S T + + + +C +CG C C Sbjct: 147 YRNLDKCIMCRRCETMCNEVQTCQVYSAVDRGFETVVSPAFGRPMLDTQCTFCGQCVSVC 206 Query: 114 PVDAIVEGPN 123 P A+ E N Sbjct: 207 PTAALTEVSN 216 >gi|262193410|ref|YP_003264619.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haliangium ochraceum DSM 14365] gi|262076757|gb|ACY12726.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haliangium ochraceum DSM 14365] Length = 840 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 11/84 (13%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 +K P + L N +RC+ C C A+CP + + S Sbjct: 19 HQKPQAQPENQQARILVHAIND-DRCVGCDACVAVCPTNVLDLISNKSRV---------- 67 Query: 98 IDMIKCIYCGLCQEACPVDAIVEG 121 + CI C C ACP +A+V Sbjct: 68 LRFQDCIQCEQCMWACPTEALVMH 91 Score = 42.0 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 8/46 (17%), Positives = 18/46 (39%) Query: 78 ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + + + R + + I+ +C+ C C CP + + N Sbjct: 18 HHQKPQAQPENQQARILVHAINDDRCVGCDACVAVCPTNVLDLISN 63 >gi|121596434|ref|YP_988330.1| 4Fe-4S ferredoxin [Acidovorax sp. JS42] gi|120608514|gb|ABM44254.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Acidovorax sp. JS42] Length = 77 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +RC C C +CP ++++ G +R+V +D C C LC CP DAI Sbjct: 12 DPQRCTGCGWCVGVCPPHVLSLQVQGPERFGPKRSVLHD--APGCTGCALCALRCPFDAI 69 Query: 119 VEGPN 123 N Sbjct: 70 RMVRN 74 >gi|89889348|ref|ZP_01200859.1| hypothetical transmembrane protein [Flavobacteria bacterium BBFL7] gi|89517621|gb|EAS20277.1| hypothetical transmembrane protein [Flavobacteria bacterium BBFL7] Length = 545 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 9/53 (16%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 +CI+C C C + +I C+ CG+C CP Sbjct: 465 QCISCGNCSTYCEMGIDVRSYAQKGE---------NIVRASCVGCGICSAVCP 508 >gi|73668105|ref|YP_304120.1| hypothetical protein Mbar_A0559 [Methanosarcina barkeri str. Fusaro] gi|72395267|gb|AAZ69540.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro] Length = 634 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 18/52 (34%), Gaps = 12/52 (23%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 C C +C C AI ++ CI+CG C E CP Sbjct: 590 CQGCGVCVGHCEHNAIEMKEKKVR------------IKENCIHCGACIEVCP 629 >gi|51244331|ref|YP_064215.1| Fe-center hydrogenase, large subunit [Desulfotalea psychrophila LSv54] gi|50875368|emb|CAG35208.1| probable Fe-center hydrogenase, large subunit [Desulfotalea psychrophila LSv54] Length = 471 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 10/55 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 +E C C C+ +CP AI+ R + ID CI+CG C + C Sbjct: 21 DQELCTGCGRCKEVCPVGAISG----------RLNRAHQIDTDACIFCGQCVQIC 65 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 12/21 (57%), Positives = 13/21 (61%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID C CG C+E CPV AI Sbjct: 20 IDQELCTGCGRCKEVCPVGAI 40 >gi|330997523|ref|ZP_08321371.1| 4Fe-4S binding domain protein [Paraprevotella xylaniphila YIT 11841] gi|329570468|gb|EGG52195.1| 4Fe-4S binding domain protein [Paraprevotella xylaniphila YIT 11841] Length = 387 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 28/82 (34%), Gaps = 8/82 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP--VD 116 + +C C C ICP + I + + + CI CGLC+ CP Sbjct: 6 DKAKCCGCNACVQICPQKCIEMNPDSEGFLYPKTSK------ENCIQCGLCERVCPLGEP 59 Query: 117 AIVEGPNFEFATETRQELYYDK 138 P A + E DK Sbjct: 60 KSKREPKEILAATNKNEHILDK 81 >gi|323142952|ref|ZP_08077661.1| 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family [Succinatimonas hippei YIT 12066] gi|322417269|gb|EFY07894.1| 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family [Succinatimonas hippei YIT 12066] Length = 542 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 9/62 (14%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C+ C C +CP A+ + Y+ + C CG+C + CP I Sbjct: 488 NCMECDNCYGVCPDSAVVKLGPGKG---------YEFNYDYCKGCGVCAQECPCGHIKMV 538 Query: 122 PN 123 P Sbjct: 539 PE 540 >gi|310827347|ref|YP_003959704.1| hypothetical protein ELI_1755 [Eubacterium limosum KIST612] gi|308739081|gb|ADO36741.1| hypothetical protein ELI_1755 [Eubacterium limosum KIST612] Length = 599 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 10/68 (14%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 L + EE C C C CPA A++ E H ID +KCI CG C+ Sbjct: 534 PKLTAFVIDEEACRGCMRCSKACPAGAVSGEVKKPHH----------IDPVKCIACGSCR 583 Query: 111 EACPVDAI 118 EAC DA+ Sbjct: 584 EACNFDAV 591 >gi|302387729|ref|YP_003823551.1| PAS/PAC sensor protein [Clostridium saccharolyticum WM1] gi|302198357|gb|ADL05928.1| putative PAS/PAC sensor protein [Clostridium saccharolyticum WM1] Length = 577 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 11/66 (16%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 +C C C C +A+ + R +I KC+ CG C + CP A Sbjct: 9 TKCKHCYKCIRNCEVKAV-----------MIKDERAEIMPDKCVLCGKCMQVCPQSAKTL 57 Query: 121 GPNFEF 126 + + Sbjct: 58 ISDLDL 63 >gi|300175642|emb|CBK20953.2| unnamed protein product [Blastocystis hominis] Length = 1185 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 17/91 (18%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG + N ++ C C C +ICP +A + + Sbjct: 674 RGMATIVPVWN-KDTCTQCNQCASICPHSVIRPFLMDAEETKKAPASFTYLPAVGDELKG 732 Query: 94 VRYDID--MIKCIYCGLCQEACPVDAIVEGP 122 + + I + C C +C CP +++ P Sbjct: 733 LNFTIQASPLDCTGCEVCATVCPTESLKMEP 763 >gi|229828025|ref|ZP_04454094.1| hypothetical protein GCWU000342_00074 [Shuttleworthia satelles DSM 14600] gi|229792619|gb|EEP28733.1| hypothetical protein GCWU000342_00074 [Shuttleworthia satelles DSM 14600] Length = 328 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 23/75 (30%), Gaps = 8/75 (10%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G + +RC++C C C + + D KC+ CG+ Sbjct: 161 GIIGMTEPQYDSDRCVSCGQCVDYCQ--------RRSVGALSVVNNKIVRDTAKCVGCGV 212 Query: 109 CQEACPVDAIVEGPN 123 C CP A Sbjct: 213 CVHYCPTRAWTRSKE 227 >gi|167746138|ref|ZP_02418265.1| hypothetical protein ANACAC_00834 [Anaerostipes caccae DSM 14662] gi|167654653|gb|EDR98782.1| hypothetical protein ANACAC_00834 [Anaerostipes caccae DSM 14662] Length = 1174 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 31/103 (30%), Gaps = 20/103 (19%) Query: 31 KTTINYPFEKGSTSPRF-----RGEHALRRYPNGEERCIACKLCEAICPAQ-----AITI 80 K + P+ G RG N + CI C C +CP A+T Sbjct: 656 KVSDLVPYADGHMPQGSAAYEKRGVAVDVPTWN-PDNCIQCNFCAYVCPHAVIRPVAMTE 714 Query: 81 ESGPRCHDGTR---------RTVRYDIDMIKCIYCGLCQEACP 114 E + T+ ++ C CG C CP Sbjct: 715 EELAAAPEATKSLPMTGMPDYKFVMTTTVLDCTGCGSCANVCP 757 >gi|158425078|ref|YP_001526370.1| formate dehydrogenase alpha subunit [Azorhizobium caulinodans ORS 571] gi|158331967|dbj|BAF89452.1| formate dehydrogenase alpha subunit [Azorhizobium caulinodans ORS 571] Length = 945 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 3/77 (3%) Query: 55 RYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDM--IKCIYCGLCQE 111 + + +CI C C C Q + G+R + D +C+ CG C + Sbjct: 159 YFTYEQSKCIVCNRCVRACEEVQGTFALTISGRGFGSRVSPGMDEPFLSSECVSCGACVQ 218 Query: 112 ACPVDAIVEGPNFEFAT 128 ACP + E +E T Sbjct: 219 ACPTATLNEKAMYEIGT 235 >gi|91772867|ref|YP_565559.1| acetyl-CoA decarbonylase/synthase complex subunit alpha [Methanococcoides burtonii DSM 6242] gi|121686863|sp|Q12XL7|ACDA_METBU RecName: Full=Acetyl-CoA decarbonylase/synthase complex subunit alpha; Short=ACDS complex subunit alpha; AltName: Full=ACDS complex carbon monoxide dehydrogenase; Short=ACDS CODH gi|91711882|gb|ABE51809.1| Acetyl-CoA decarbonylase/synthase complex alpha subunit 2 [Methanococcoides burtonii DSM 6242] Length = 802 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 3/68 (4%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C+ C CE CP E+ +G ++++ KCI CG C+ ACP D I Sbjct: 411 DSCVHCLKCEVACPNSLPISEAMTALSEGD--LSKFELLHDKCIACGRCEYACPKD-IDI 467 Query: 121 GPNFEFAT 128 E ++ Sbjct: 468 VNVIEKSS 475 >gi|15678433|ref|NP_275548.1| polyferredoxin [Methanothermobacter thermautotrophicus str. Delta H] gi|2621468|gb|AAB84911.1| polyferredoxin [Methanothermobacter thermautotrophicus str. Delta H] Length = 261 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 29/75 (38%), Gaps = 11/75 (14%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 +RC AC C CP AI ++ +D CI CG C CP DA+ Sbjct: 140 DRCTACGTCTRFCPTGAIQLDKEIAV-----------VDESICIGCGACVNVCPSDAVEL 188 Query: 121 GPNFEFATETRQELY 135 ETR+ L Sbjct: 189 ERELGPVIETRRLLV 203 Score = 41.6 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 12/82 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C +CP+ A+ +E TRR + D C+ C +C+E CP AI Sbjct: 167 DESICIGCGACVNVCPSDAVELERELGPVIETRRLLV---DQDACVECLVCEENCPTGAI 223 Query: 119 VEGPNFEFATETRQELYYDKER 140 E+ DK++ Sbjct: 224 RIED---------GEVVVDKDK 236 Score = 37.4 bits (85), Expect = 0.71, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 10/68 (14%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 L ++ + +C+ C LC CP AI+ S + + C+ C +C + Sbjct: 47 VLDKFIDITPKCVRCNLCFEECPVDAISESSASKPAR----------ILDNCVKCEICAQ 96 Query: 112 ACPVDAIV 119 CPV I Sbjct: 97 TCPVRCIN 104 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 11/85 (12%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + RR ++ C+ C +CE CP AI IE G Sbjct: 181 CPSDAVELERELGPVIETRRLLVDQDACVECLVCEENCPTGAIRIEDGEVV--------- 231 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVE 120 +D KCI C +C CPV A+ Sbjct: 232 --VDKDKCILCEVCSTRCPVAALKL 254 >gi|57641578|ref|YP_184056.1| indolepyruvate: ferredoxin oxidoreductase, alpha subunit [Thermococcus kodakarensis KOD1] gi|57159902|dbj|BAD85832.1| indolepyruvate: ferredoxin oxidoreductase, alpha subunit [Thermococcus kodakarensis KOD1] Length = 637 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 9/60 (15%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++C CK C + A+ + T + ID + C CG+C + CP DAI Sbjct: 579 DKCTGCKACILLTGCPALVYDPE---------TKKVRIDELLCTGCGVCNQTCPFDAIKF 629 >gi|323702954|ref|ZP_08114611.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Desulfotomaculum nigrificans DSM 574] gi|323532085|gb|EGB21967.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Desulfotomaculum nigrificans DSM 574] Length = 1482 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 31/88 (35%), Gaps = 22/88 (25%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C C +C C A ++ R + + C CG C ACP A Sbjct: 1413 DTELCKGCGICVEACAYGARVLDE---------RRGVALVREVLCQGCGACVAACPSGA- 1462 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGD 146 T+ R ++K++LL D Sbjct: 1463 ---------TQQRG---FEKQQLLAMMD 1478 Score = 37.4 bits (85), Expect = 0.69, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 22/63 (34%), Gaps = 3/63 (4%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 E I A+ I P ID+ KC CG C CPV+ F + Sbjct: 81 EIITGAKVTDISGEPGNFKVKVHQKARYIDISKCTGCGDCARVCPVE---LPNEFNGEFD 137 Query: 130 TRQ 132 R+ Sbjct: 138 QRK 140 >gi|262406391|ref|ZP_06082940.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Bacteroides sp. 2_1_22] gi|262355094|gb|EEZ04185.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Bacteroides sp. 2_1_22] Length = 401 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 6/55 (10%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 C C C +C AI G R V ++ CI CGLCQ+ CP Sbjct: 7 HNECTGCSACVNVCGKNAIFYCEDK---IGFRYPVV---NLDLCIDCGLCQKVCP 55 >gi|240102324|ref|YP_002958632.1| 2-ketoisovalerate ferredoxin oxidoreductase subunit delta [Thermococcus gammatolerans EJ3] gi|239909877|gb|ACS32768.1| Ketoisovalerate oxidoreductase subunit vorD (vorD) [Thermococcus gammatolerans EJ3] Length = 105 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 24/63 (38%), Gaps = 10/63 (15%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E+C+ C +C CP AI I ID C CG+C CP +AI Sbjct: 51 EKCVKCYICWKFCPEPAIYIREDGYVG----------IDYDYCKGCGICANECPTNAITM 100 Query: 121 GPN 123 Sbjct: 101 EKE 103 >gi|222445638|ref|ZP_03608153.1| hypothetical protein METSMIALI_01278 [Methanobrevibacter smithii DSM 2375] gi|261349811|ref|ZP_05975228.1| heterodisulfide reductase, A subunit [Methanobrevibacter smithii DSM 2374] gi|222435203|gb|EEE42368.1| hypothetical protein METSMIALI_01278 [Methanobrevibacter smithii DSM 2375] gi|288860596|gb|EFC92894.1| heterodisulfide reductase, A subunit [Methanobrevibacter smithii DSM 2374] Length = 662 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 7/64 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C AC++C +CP AI+I +I+ C CG C ACP A+ Sbjct: 587 DDVICGACEVCVELCPYGAISITGDDNAAHA-------EINAALCKGCGTCVGACPSGAM 639 Query: 119 VEGP 122 + Sbjct: 640 DQQH 643 Score = 37.0 bits (84), Expect = 0.81, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 23/82 (28%), Gaps = 7/82 (8%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR-------CHDGTRRTVRYDI 98 F + EE C C C CP + + I Sbjct: 237 NFHVTVGKKARYVIEEDCTGCGSCVEACPIEIPNYYDEGVGMVKAAYIPFPQAVPLCATI 296 Query: 99 DMIKCIYCGLCQEACPVDAIVE 120 D CI C LC +AC AI Sbjct: 297 DKDYCIECMLCDQACERGAIDH 318 >gi|212692834|ref|ZP_03300962.1| hypothetical protein BACDOR_02333 [Bacteroides dorei DSM 17855] gi|237724884|ref|ZP_04555365.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. D4] gi|265754729|ref|ZP_06089781.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. 3_1_33FAA] gi|212664623|gb|EEB25195.1| hypothetical protein BACDOR_02333 [Bacteroides dorei DSM 17855] gi|229436622|gb|EEO46699.1| pyruvate-formate lyase-activating enzyme [Bacteroides dorei 5_1_36/D4] gi|263234843|gb|EEZ20411.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. 3_1_33FAA] Length = 302 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 15/80 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++C+ C C +CP A+T+ D KC+ CG C E CP AI Sbjct: 51 KKCLGCGTCLKVCPNGALTLTPEGIVTDKQ-----------KCVLCGRCAEECPAMAIEI 99 Query: 121 GPNFEFATETRQELYYDKER 140 T + L ++ E+ Sbjct: 100 SG----TEYTAEYLIHEIEK 115 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 15/39 (38%) Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +G R KC+ CG C + CP A+ P Sbjct: 35 HNPEGIRNGKDKLYTAKKCLGCGTCLKVCPNGALTLTPE 73 >gi|217966695|ref|YP_002352201.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Dictyoglomus turgidum DSM 6724] gi|217335794|gb|ACK41587.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Dictyoglomus turgidum DSM 6724] Length = 92 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 21/65 (32%), Gaps = 11/65 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +C C C CP A+ + ID C CG+C CPV AI Sbjct: 37 DYNKCTTCMFCWLFCPDSAVKFDGQKVY-----------IDYDYCKGCGVCAAECPVKAI 85 Query: 119 VEGPN 123 Sbjct: 86 TMKEE 90 >gi|159905591|ref|YP_001549253.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanococcus maripaludis C6] gi|159887084|gb|ABX02021.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus maripaludis C6] Length = 252 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 10/76 (13%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 + L ++ EE CI C +CE CP AI +E I++ C+ C Sbjct: 119 HRKVRLVKHELDEESCIKCGICERFCPTSAIKVEKRNSIE----------INLDLCMGCT 168 Query: 108 LCQEACPVDAIVEGPN 123 C++ CP AI Sbjct: 169 ACEKVCPKSAIKVENE 184 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 32/87 (36%), Gaps = 11/87 (12%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P A + CI C +C ICP AI E G Sbjct: 174 CPKSAIKVENELGEIPAENVISLNNDTCINCMVCSEICPVGAIVYEDG-----------L 222 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGP 122 +D KCI+CG C++ CPV AI P Sbjct: 223 MKLDDKKCIFCGKCEKNCPVTAIAIKP 249 Score = 38.5 bits (88), Expect = 0.30, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 30/74 (40%), Gaps = 15/74 (20%) Query: 60 EERCIACKLCEAICPAQAI---------------TIESGPRCHDGTRRTVRYDIDMIKCI 104 E+C+ C++C CP AI R V++++D CI Sbjct: 76 PEKCVKCEICAKTCPVGAINVLEGRAELKDDDVIYELKEIDVTHRKVRLVKHELDEESCI 135 Query: 105 YCGLCQEACPVDAI 118 CG+C+ CP AI Sbjct: 136 KCGICERFCPTSAI 149 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 3/56 (5%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C CE +CP AI +E+ ++ CI C +C E CPV AI Sbjct: 164 CMGCTACEKVCPKSAIKVENELGEIPAENVIS---LNNDTCINCMVCSEICPVGAI 216 >gi|91228908|ref|ZP_01262808.1| electron transport complex protein RnfC [Vibrio alginolyticus 12G01] gi|91187539|gb|EAS73871.1| electron transport complex protein RnfC [Vibrio alginolyticus 12G01] Length = 878 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 13/107 (12%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 CI C C CPA + + ++++ CI CG C CP I Sbjct: 377 ECIRCSQCAEACPAS-LLPQQLQWHAKAEEYDKLEELNLKDCIECGACAFVCP-SEIPLV 434 Query: 122 PNF-----EFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + E T T++ ++ +L R+E + R + + R Sbjct: 435 QYYRQAKAEIRTRTQEAEAAERAKL-----RFEEKKAR-MEREKAER 475 >gi|52549490|gb|AAU83339.1| coenzyme F420-reducing hydrogenase beta subunit [uncultured archaeon GZfos27E7] Length = 267 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 11/63 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 EE+ C C +C AI+I G ID KCI CG C CP +A+ Sbjct: 116 DEEKFNGCGRCAELCRVDAISIVLGKSV-----------IDSDKCISCGWCIRGCPHEAV 164 Query: 119 VEG 121 +E Sbjct: 165 IET 167 >gi|15605931|ref|NP_213308.1| NADH dehydrogenase I chain G [Aquifex aeolicus VF5] gi|2983106|gb|AAC06711.1| NADH dehydrogenase I chain G [Aquifex aeolicus VF5] Length = 632 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 22/64 (34%), Gaps = 2/64 (3%) Query: 61 ERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RC+ C C C + R +D C CG+C CPV AI Sbjct: 152 NRCVVCYRCTRACDEVVGTRALYVEDRGFHSNIVPAVRPMDTSTCEMCGICVHVCPVGAI 211 Query: 119 VEGP 122 + P Sbjct: 212 ISKP 215 >gi|14590966|ref|NP_143041.1| indolepyruvate ferredoxin oxidoreductase alpha subunit [Pyrococcus horikoshii OT3] gi|3257555|dbj|BAA30238.1| 618aa long hypothetical indolepyruvate ferredoxin oxidoreductase alpha subunit [Pyrococcus horikoshii OT3] Length = 618 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 9/79 (11%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 P R E++C CK C + A+ + R + ID + C Sbjct: 547 PVIRRGETREPPIVIEDKCTGCKACILLSGCPALIYDPETR---------KVRIDELICT 597 Query: 105 YCGLCQEACPVDAIVEGPN 123 CG+C + CP DAI Sbjct: 598 GCGICNQLCPFDAIKFREE 616 >gi|325121371|gb|ADY80894.1| putative iron-sulfur protein [Acinetobacter calcoaceticus PHEA-2] Length = 263 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 28/85 (32%), Gaps = 10/85 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E + G + E+ CI C C + CP AI + + I Sbjct: 68 ETSVWPVQADGRPQRMKAIIREDECIGCTKCISACPVDAIIGSGK----------LMHTI 117 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPN 123 C C LC CPVD I + Sbjct: 118 LTDLCTGCELCIPPCPVDCIDLVED 142 >gi|317473313|ref|ZP_07932608.1| ferredoxin oxidoreductase [Anaerostipes sp. 3_2_56FAA] gi|316899149|gb|EFV21168.1| ferredoxin oxidoreductase [Anaerostipes sp. 3_2_56FAA] Length = 1174 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 31/103 (30%), Gaps = 20/103 (19%) Query: 31 KTTINYPFEKGSTSPRF-----RGEHALRRYPNGEERCIACKLCEAICPAQ-----AITI 80 K + P+ G RG N + CI C C +CP A+T Sbjct: 656 KVSDLVPYADGHMPQGSAAYEKRGVAVDVPTWN-PDNCIQCNFCAYVCPHAVIRPVAMTE 714 Query: 81 ESGPRCHDGTR---------RTVRYDIDMIKCIYCGLCQEACP 114 E + T+ ++ C CG C CP Sbjct: 715 EELAAAPEATKSLPMTGMPDYKFVMTTTVLDCTGCGSCANVCP 757 >gi|293608863|ref|ZP_06691166.1| electron transport complex [Acinetobacter sp. SH024] gi|292829436|gb|EFF87798.1| electron transport complex [Acinetobacter sp. SH024] Length = 263 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 28/85 (32%), Gaps = 10/85 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E + G + E+ CI C C + CP AI + + I Sbjct: 68 ETSVWPVQVDGRPQRMKAIIREDECIGCTKCISACPVDAIIGSGK----------LMHTI 117 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPN 123 C C LC CPVD I + Sbjct: 118 LTDLCTGCELCIPPCPVDCIDLVED 142 >gi|291612995|ref|YP_003523152.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Sideroxydans lithotrophicus ES-1] gi|291583107|gb|ADE10765.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Sideroxydans lithotrophicus ES-1] Length = 431 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 22/66 (33%), Gaps = 10/66 (15%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 C+ C CP AI + G I+ CI G+C ACP Sbjct: 50 HPEINPNLCMGAGSCITACPEGAIGMIKGKAVL----------INPTHCIGHGVCAPACP 99 Query: 115 VDAIVE 120 +AI Sbjct: 100 HNAIKL 105 >gi|315230768|ref|YP_004071204.1| MinD-like P-loop ATPase [Thermococcus barophilus MP] gi|315183796|gb|ADT83981.1| MinD-like P-loop ATPase [Thermococcus barophilus MP] Length = 286 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 36/115 (31%), Gaps = 20/115 (17%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRG-------EHALRRYPNGEERCIACKL 68 + LR +F T+ + G L +CI C+ Sbjct: 17 IAINLAIALRNYFD--LTLADLDVEAPNDHILLGIELQNEEPVELFMPRFDYSKCIKCRR 74 Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-AIVEGP 122 C +C AI R + C CG C+ CPV+ AI+EG Sbjct: 75 CAEVCEEHAIIT----------MRDGTPFLMPTLCSGCGACRIVCPVEGAILEGK 119 Score = 33.9 bits (76), Expect = 8.2, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 12/30 (40%) Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 D KCI C C E C AI+ + Sbjct: 60 FMPRFDYSKCIKCRRCAEVCEEHAIITMRD 89 >gi|164686402|ref|ZP_02210432.1| hypothetical protein CLOBAR_02840 [Clostridium bartlettii DSM 16795] gi|164602004|gb|EDQ95469.1| hypothetical protein CLOBAR_02840 [Clostridium bartlettii DSM 16795] Length = 1177 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 42/123 (34%), Gaps = 33/123 (26%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITI------------------ESGPRCHDGTRR 92 A+ E CI C C +CP I ++ + G + Sbjct: 677 IAVNVPEWKPENCIQCNRCSFVCPHACIRPVLVTEEELAAAPEAFVAVDAKGKEVKGLKY 736 Query: 93 TVRYDIDMIKCIYCGLCQEACP--VDAIVEGP---------NFEFATETRQELYYDKERL 141 R + + C CG C + CP A+V P N+ FA +T++ K L Sbjct: 737 --RMQVSTMDCTGCGNCADVCPAKEKALVMEPLDTQEKEVENWAFAVDTKK--VAPKGDL 792 Query: 142 LNN 144 +N Sbjct: 793 MNV 795 >gi|218782352|ref|YP_002433670.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfatibacillum alkenivorans AK-01] gi|218763736|gb|ACL06202.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfatibacillum alkenivorans AK-01] Length = 287 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 24/59 (40%), Gaps = 12/59 (20%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 CIAC C +CP AI + G +CI CGLC CP DA+ Sbjct: 220 DCIACGKCVEVCPMHAIVLGEEKAEIQG------------RCIGCGLCASNCPTDAMEL 266 Score = 37.0 bits (84), Expect = 0.95, Method: Composition-based stats. Identities = 12/23 (52%), Positives = 13/23 (56%) Query: 101 IKCIYCGLCQEACPVDAIVEGPN 123 CI CG C E CP+ AIV G Sbjct: 219 GDCIACGKCVEVCPMHAIVLGEE 241 >gi|114766788|ref|ZP_01445722.1| dihydropyrimidine dehydrogenase [Pelagibaca bermudensis HTCC2601] gi|114540982|gb|EAU44040.1| dihydropyrimidine dehydrogenase [Roseovarius sp. HTCC2601] Length = 434 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 8/63 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117 +E CI+C C A C E + + +C+ C LC CPV D Sbjct: 342 DQELCISCGRCYAAC-------EDTSHQAIDMSEDRVFTVKDDECVACNLCVNVCPVEDC 394 Query: 118 IVE 120 I Sbjct: 395 ITM 397 >gi|332285354|ref|YP_004417265.1| NAD-dependent formate dehydrogenase alpha subunit [Pusillimonas sp. T7-7] gi|330429307|gb|AEC20641.1| NAD-dependent formate dehydrogenase alpha subunit [Pusillimonas sp. T7-7] Length = 981 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 23/75 (30%), Gaps = 3/75 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T +G C+ CG C + Sbjct: 162 YFSYDPSKCIVCSRCVRACDEVQGTFALTITGRGFDSRVTAGQHDSFLDSDCVSCGACVQ 221 Query: 112 ACPVDAIVEGPNFEF 126 ACP ++E E Sbjct: 222 ACPTSTLMEKSVIEM 236 >gi|317048250|ref|YP_004115898.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Pantoea sp. At-9b] gi|316949867|gb|ADU69342.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Pantoea sp. At-9b] Length = 1175 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 22/125 (17%), Positives = 32/125 (25%), Gaps = 18/125 (14%) Query: 29 KAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES---- 82 K + P T + + A + C C C A CP AI + Sbjct: 653 KLPVSALPPDGSWPTGTTQWEKRNIAEAIPIWQPDLCTQCNHCVAACPHSAIRAKVVTPE 712 Query: 83 ------------GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 + D + + C C LC E CP ++ Sbjct: 713 ALEGAPISLASLDVKSRDMRGQKYVLQVAPEDCTGCNLCVEVCPASDRQHPEIKAINMQS 772 Query: 131 RQELY 135 R E Sbjct: 773 RLEHV 777 >gi|310659596|ref|YP_003937317.1| NADH dehydrogenase (quinone) [Clostridium sticklandii DSM 519] gi|308826374|emb|CBH22412.1| NADH dehydrogenase (Quinone) [Clostridium sticklandii] Length = 576 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 10/67 (14%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 AL +Y E+C+ C +C CP I+ E I+ CI CG C + Sbjct: 517 ALIKYVIDPEKCVGCTVCAKACPVSCISGERKEPHL----------INQDACIKCGQCYQ 566 Query: 112 ACPVDAI 118 C DAI Sbjct: 567 KCKFDAI 573 Score = 38.9 bits (89), Expect = 0.25, Method: Composition-based stats. Identities = 13/49 (26%), Positives = 20/49 (40%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + I + ++Y ID KC+ C +C +ACPV I Sbjct: 495 KYFRNEYEDHIYNKTCTAKQCSALIKYVIDPEKCVGCTVCAKACPVSCI 543 >gi|302339324|ref|YP_003804530.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Spirochaeta smaragdinae DSM 11293] gi|301636509|gb|ADK81936.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Spirochaeta smaragdinae DSM 11293] Length = 552 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 28/94 (29%), Gaps = 19/94 (20%) Query: 33 TINYPF------EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC 86 T + P + + + I C C + CP AIT+ Sbjct: 392 TESCPDSFLIGDDHPPVGKGKKPVAVFYCDQD-----IPCNPCISACPVGAITMTPS--- 443 Query: 87 HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 T +D C CG C CP AIV Sbjct: 444 -----LTGIPRLDSDLCTGCGRCLSVCPGQAIVL 472 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 29/89 (32%), Gaps = 16/89 (17%) Query: 48 RGEHALRRYPNGEERCIACKLCE--------------AICPAQAITIESGPRCHDGTRRT 93 R R +G + I+C CE CP + + P G + Sbjct: 356 RRMGKERIMRSGHGQEISCSDCEASGTVTDNTDTVPTESCPDSFLIGDDHPPVGKGKKPV 415 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + D I C C ACPV AI P Sbjct: 416 AVFYCDQD--IPCNPCISACPVGAITMTP 442 >gi|296163947|ref|ZP_06846582.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295900702|gb|EFG80073.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 95 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 5/68 (7%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 R + ++ CI C CE CP + I G R+ ID+ +CI CG C C Sbjct: 6 RGHFYIDDTCIGCGACEHSCPGRVDAISKKADDFLG-----RFVIDLDECIDCGKCVPLC 60 Query: 114 PVDAIVEG 121 PVD I +G Sbjct: 61 PVDCIHDG 68 >gi|289192298|ref|YP_003458239.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus sp. FS406-22] gi|288938748|gb|ADC69503.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus sp. FS406-22] Length = 657 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 28/80 (35%), Gaps = 7/80 (8%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAIT-------IESGPRCHDGTRRTVRYDI 98 F + E C C C A+CP + + Y I Sbjct: 228 NFEVTIEKKPRYVDENICTGCGACAAVCPIEVPNEFDLGLGTRKAIYVPFAQAVPLVYTI 287 Query: 99 DMIKCIYCGLCQEACPVDAI 118 DM CI CGLC++AC AI Sbjct: 288 DMDHCIRCGLCEKACGPGAI 307 Score = 42.0 bits (97), Expect = 0.029, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 7/70 (10%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + R E+ C C++C +CP AIT + ++ + C CG C Sbjct: 571 IEMIRAVVDEDVCGGCQVCAKMCPYNAITYVEKD-------GHLVAQVNDVACKGCGACA 623 Query: 111 EACPVDAIVE 120 ACP A+ Sbjct: 624 GACPSGAMQL 633 >gi|269119251|ref|YP_003307428.1| NADH dehydrogenase (quinone) [Sebaldella termitidis ATCC 33386] gi|268613129|gb|ACZ07497.1| NADH dehydrogenase (quinone) [Sebaldella termitidis ATCC 33386] Length = 614 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 10/59 (16%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++CI C C +CP I + ++ I+ KCI CG C + C AI Sbjct: 563 NDKCIGCTACARVCPVSCIEG----------KVKEKHVIEQDKCIKCGACYDKCKFSAI 611 >gi|225010094|ref|ZP_03700566.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Flavobacteria bacterium MS024-3C] gi|225005573|gb|EEG43523.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Flavobacteria bacterium MS024-3C] Length = 538 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 12/78 (15%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R + R NG +CI+C C C + +I C+ CG Sbjct: 447 RFKSRFRITTNG-GQCISCGNCSTYCEMGIDVRAYAQKGE---------NIVRSSCVGCG 496 Query: 108 LCQEACP--VDAIVEGPN 123 +C CP V + +GP Sbjct: 497 VCSAVCPRGVLKLEQGPE 514 >gi|160939954|ref|ZP_02087300.1| hypothetical protein CLOBOL_04844 [Clostridium bolteae ATCC BAA-613] gi|158437098|gb|EDP14864.1| hypothetical protein CLOBOL_04844 [Clostridium bolteae ATCC BAA-613] Length = 427 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 28/65 (43%), Gaps = 6/65 (9%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++C+ C C CP AI++E G R +D C+ CG+C C V AI Sbjct: 293 DQCVGCGKCAKTCPVLAISMEEGENG------RKRAVVDKDICLGCGVCDRNCGVKAIHM 346 Query: 121 GPNFE 125 E Sbjct: 347 ERRTE 351 Score = 40.9 bits (94), Expect = 0.062, Method: Composition-based stats. Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 4/43 (9%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139 DI +C+ CG C + CPV AI E R+ DK+ Sbjct: 289 DITGDQCVGCGKCAKTCPVLAISM----EEGENGRKRAVVDKD 327 >gi|150401064|ref|YP_001324830.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanococcus aeolicus Nankai-3] gi|150013767|gb|ABR56218.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus aeolicus Nankai-3] Length = 354 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 1/72 (1%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G R ++ C+ C +C+ ICP +AI++ + + G ++ DI C+ CG+ Sbjct: 21 GAKEKRVLNWNDKSCVGCGICKDICPTEAISMGALGAVYKGVVSDLKLDISTD-CVLCGM 79 Query: 109 CQEACPVDAIVE 120 C ACP +A+ Sbjct: 80 CASACPFNAMEL 91 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 1/70 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ C+ C+ CE +CP AI +E + T I+ KC YC +C E CP D+I Sbjct: 114 NQDACVLCEQCELVCPQDAIHVE-RELPNRETLVLGEITINKDKCKYCSICAEYCPADSI 172 Query: 119 VEGPNFEFAT 128 PN + + Sbjct: 173 TLIPNDDPTS 182 Score = 41.2 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R L +++C C +C CPA +IT+ + +D C+YC Sbjct: 142 RETLVLGEITINKDKCKYCSICAEYCPADSITLIPNDD-PTSIKPFSDIVVDTETCVYCK 200 Query: 108 LCQEACPVDAI 118 +C++ACP DAI Sbjct: 201 VCEKACPHDAI 211 Score = 41.2 bits (95), Expect = 0.051, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 8/83 (9%) Query: 58 NGEERCIACKLCEAICPAQAITIE----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + C+ C +C + CP A+ +E S + ++ C+ C C+ C Sbjct: 69 DISTDCVLCGMCASACPFNAMELEINGTSTKEYPQYPKIKRSITLNQDACVLCEQCELVC 128 Query: 114 PVDAIVEGPNFEFATETRQELYY 136 P DAI R+ L Sbjct: 129 PQDAIHVEREL----PNRETLVL 147 Score = 40.9 bits (94), Expect = 0.057, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 8/64 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E++C++C CE +CPA A+ +E ID KC CG C CP + Sbjct: 240 DEDKCVSCSKCEIVCPADALVVEKPFEGELC--------IDAEKCNACGACVAVCPCQVL 291 Query: 119 VEGP 122 P Sbjct: 292 YFPP 295 Score = 40.9 bits (94), Expect = 0.062, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 8/75 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD--------IDMIKCIYCGLCQ 110 E C+ CK+CE CP AI + +T ID KC+ C C+ Sbjct: 192 DTETCVYCKVCEKACPHDAIEVICYKCPLAVRIKTPEIYKEIKGQTIIDEDKCVSCSKCE 251 Query: 111 EACPVDAIVEGPNFE 125 CP DA+V FE Sbjct: 252 IVCPADALVVEKPFE 266 Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 3/62 (4%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E+C AC C A+CP Q + P D +R + CI CG C +ACP+D Sbjct: 270 CIDAEKCNACGACVAVCPCQVLYF---PPHTDVGQRPEPVAVVQEACILCGACVQACPID 326 Query: 117 AI 118 I Sbjct: 327 VI 328 Score = 34.3 bits (77), Expect = 5.5, Method: Composition-based stats. Identities = 9/19 (47%), Positives = 14/19 (73%) Query: 103 CIYCGLCQEACPVDAIVEG 121 C+ CG+C++ CP +AI G Sbjct: 35 CVGCGICKDICPTEAISMG 53 >gi|119510366|ref|ZP_01629501.1| NAD-reducing hydrogenase subunit U [Nodularia spumigena CCY9414] gi|119465003|gb|EAW45905.1| NAD-reducing hydrogenase subunit U [Nodularia spumigena CCY9414] Length = 238 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 29/89 (32%), Gaps = 12/89 (13%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRR 92 ++P K S G RCI C C +C A T + R + Sbjct: 128 HFPDRKVDVSHDRFGV--------DHNRCILCTRCIRVCDEIEGAHTWDMAGRGTNSHVI 179 Query: 93 TVRYDID--MIKCIYCGLCQEACPVDAIV 119 T C CG C +ACP A+ Sbjct: 180 TDFNQPWGTSDTCTSCGKCVDACPTGALF 208 >gi|315425441|dbj|BAJ47105.1| pyruvate ferredoxin oxidoreductase, gamma subunit [Candidatus Caldiarchaeum subterraneum] Length = 294 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 30/78 (38%), Gaps = 10/78 (12%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G + R +C CK+C CP AI++++ + ID C C + Sbjct: 225 GNWRVFRPVVDYGKCTGCKVCFVYCPDSAISLDAENKPV----------IDYEHCKGCLI 274 Query: 109 CQEACPVDAIVEGPNFEF 126 C CP+ AI E Sbjct: 275 CVVECPIRAISSVREVEI 292 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 18/50 (36%) Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + + + R G R R +D KC C +C CP AI Sbjct: 207 RVVFSDVFAAGNAVRRSTGNWRVFRPVVDYGKCTGCKVCFVYCPDSAISL 256 >gi|257439682|ref|ZP_05615437.1| putative ferredoxin [Faecalibacterium prausnitzii A2-165] gi|257197898|gb|EEU96182.1| putative ferredoxin [Faecalibacterium prausnitzii A2-165] Length = 256 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 39/116 (33%), Gaps = 18/116 (15%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 F + + F G +P F CI C C +CP I +E+G Sbjct: 152 EFPPPRDNLYDRFMSGPVNPVFYRFFVKAEAFRATSACIGCGKCVELCPLNNIRLENGKP 211 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERL 141 + C +C C CP +AI E+ ++R + Y E L Sbjct: 212 ------------LWGKNCTHCMACICYCPKEAI------EYGKKSRGKPRYHFEAL 249 >gi|256830046|ref|YP_003158774.1| Cobyrinic acid ac-diamide synthase [Desulfomicrobium baculatum DSM 4028] gi|256579222|gb|ACU90358.1| Cobyrinic acid ac-diamide synthase [Desulfomicrobium baculatum DSM 4028] Length = 290 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 11/62 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+C C LC ++C AI + G + + ++C C +C CP AI Sbjct: 64 DPEKCTGCGLCASMCRYDAIDEKDG-----------VFSVAPLRCEGCKVCVAFCPEQAI 112 Query: 119 VE 120 Sbjct: 113 DF 114 Score = 34.3 bits (77), Expect = 5.2, Method: Composition-based stats. Identities = 13/25 (52%), Positives = 13/25 (52%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 ID KC CGLC C DAI E Sbjct: 63 IDPEKCTGCGLCASMCRYDAIDEKD 87 >gi|195565891|ref|XP_002106529.1| GD16077 [Drosophila simulans] gi|194203907|gb|EDX17483.1| GD16077 [Drosophila simulans] Length = 1031 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 18/65 (27%), Gaps = 8/65 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP-VDA 117 ++ CI C C C + C C LC CP +D Sbjct: 949 DDDMCINCGKCYMTCA-------DSGYQAIEFDKDTHIPHVNDDCTGCTLCVSVCPIIDC 1001 Query: 118 IVEGP 122 I P Sbjct: 1002 ITMVP 1006 >gi|188577211|ref|YP_001914140.1| ferredoxin [Xanthomonas oryzae pv. oryzae PXO99A] gi|188521663|gb|ACD59608.1| ferredoxin II [Xanthomonas oryzae pv. oryzae PXO99A] Length = 142 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 31/85 (36%), Gaps = 11/85 (12%) Query: 39 EKGSTSPRFRGEHAL-RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 R RG H L + E CI C C CP AI G + + Sbjct: 66 VPARPYDRSRGAHKLPQVAWIVEADCIGCTKCIHACPVDAIV---------GGAKHMHTV 116 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 I + C C LC ACPVD I P Sbjct: 117 IAPL-CTGCELCLPACPVDCIELHP 140 >gi|168238265|ref|ZP_02663323.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194738104|ref|YP_002115589.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194713606|gb|ACF92827.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197288840|gb|EDY28213.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 287 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 22/73 (30%), Gaps = 11/73 (15%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C C C CP I + I +C CG C CP A+ Sbjct: 190 PQECRMCGACWRSCPENVIQFDDN-----------TLTIAAARCTGCGGCAAVCPHQALR 238 Query: 120 EGPNFEFATETRQ 132 + E A+ Sbjct: 239 LRFDVEPASTRHS 251 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 11/50 (22%) Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C +CPAQA ++ G ID +CI CG C CPVDAI Sbjct: 29 CADVCPAQAFSLAQGQVS-----------IDTTRCIACGDCLFVCPVDAI 67 >gi|153953472|ref|YP_001394237.1| NADH dehydrogenase-related protein [Clostridium kluyveri DSM 555] gi|219854094|ref|YP_002471216.1| hypothetical protein CKR_0751 [Clostridium kluyveri NBRC 12016] gi|146346353|gb|EDK32889.1| NADH dehydrogenase-related protein [Clostridium kluyveri DSM 555] gi|219567818|dbj|BAH05802.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 320 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 10/68 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L + +++C+ C LC+ C + IT E ID KCI CG C + Sbjct: 262 LTTFYIDKDKCMGCNLCKKNCDSNCITGEFKKPHE----------IDESKCIRCGNCIDI 311 Query: 113 CPVDAIVE 120 C DAI Sbjct: 312 CRFDAIKI 319 >gi|126179569|ref|YP_001047534.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit [Methanoculleus marisnigri JR1] gi|125862363|gb|ABN57552.1| formate dehydrogenase, beta subunit (F420) [Methanoculleus marisnigri JR1] Length = 421 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 25/76 (32%), Gaps = 9/76 (11%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITI---------ESGPRCHDGTRRTVRYDID 99 G L + RCI C C CP E G +R+ Sbjct: 289 GTERLNKIREQTSRCIKCYSCIENCPICYCVECSTRKDYLVEPGVIPPPFMFHLIRFAHI 348 Query: 100 MIKCIYCGLCQEACPV 115 C+ CG C+E CPV Sbjct: 349 SDSCVNCGQCEELCPV 364 >gi|52549383|gb|AAU83232.1| coenzyme F420-reducing hydrogenase beta subunit [uncultured archaeon GZfos27A8] Length = 642 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 11/69 (15%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G R E+C C C +C AI+I G ID KC+ CG Sbjct: 507 GLIGQVRPEIDNEKCNGCGRCAELCRVDAISIVLGKAV-----------IDKDKCVTCGW 555 Query: 109 CQEACPVDA 117 C CP +A Sbjct: 556 CIRGCPSEA 564 Score = 38.9 bits (89), Expect = 0.21, Method: Composition-based stats. Identities = 18/42 (42%), Positives = 19/42 (45%) Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 A R G VR +ID KC CG C E C VDAI Sbjct: 495 ANDCVRAKRNDVGLIGQVRPEIDNEKCNGCGRCAELCRVDAI 536 >gi|14590561|ref|NP_142629.1| 2-ketoisovalerate ferredoxin oxidoreductase subunit delta [Pyrococcus horikoshii OT3] gi|6686092|sp|O58412|VORD_PYRHO RecName: Full=Ketoisovalerate oxidoreductase subunit vorD; Short=VOR; AltName: Full=2-oxoisovalerate ferredoxin reductase subunit delta; AltName: Full=2-oxoisovalerate oxidoreductase delta chain gi|3257087|dbj|BAA29770.1| 105aa long hypothetical ferredoxin oxidoreductase delta subunit [Pyrococcus horikoshii OT3] Length = 105 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 29/101 (28%), Gaps = 17/101 (16%) Query: 30 AKTTINYPFEKGSTSP-------RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 T E F G+ E +C+ C +C CP AI I+ Sbjct: 13 KPITPKSVDEYPEAPVSLGITLVNFTGDWRTFMPVIDESKCVKCYICWKYCPEPAIYIKE 72 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 ID C CG+C CP AI Sbjct: 73 DG----------FVAIDYDYCKGCGICANECPTKAITMVRE 103 >gi|332981955|ref|YP_004463396.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Mahella australiensis 50-1 BON] gi|332699633|gb|AEE96574.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Mahella australiensis 50-1 BON] Length = 573 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 22/73 (30%), Gaps = 13/73 (17%) Query: 59 GEERCIACKLCEAICP--------AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 +C+ C C +C A + + CI CG C Sbjct: 144 NPNKCVKCGRCVDMCQETQQVGILFDAYRGVDSEIVSGLGKY-----LSDAGCILCGQCS 198 Query: 111 EACPVDAIVEGPN 123 ACPV AI E Sbjct: 199 TACPVAAIYENDE 211 >gi|332702532|ref|ZP_08422620.1| FAD dependent oxidoreductase [Desulfovibrio africanus str. Walvis Bay] gi|332552681|gb|EGJ49725.1| FAD dependent oxidoreductase [Desulfovibrio africanus str. Walvis Bay] Length = 937 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 28/78 (35%), Gaps = 12/78 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIE-------SGPRCHDGTRRTVRYDIDMIKCIY---- 105 ++CIAC LC CP + G ++Y ID CIY Sbjct: 24 YVEMDKCIACGLCAEKCPKKVSNEYNAGLDTRKAAYIEYGQAVPLKYVIDAENCIYLKSG 83 Query: 106 -CGLCQEACPVDAIVEGP 122 C C++ CP AI Sbjct: 84 KCRACEKFCPTGAINFED 101 Score = 42.4 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 3/59 (5%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C C LC +CP AI++E + RR C CGLC+ CP + Sbjct: 862 DNCDGCALCVDVCPYLAISLEDYQKDGYTYRRIKTEQ---ALCKGCGLCEATCPKQGVY 917 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 3/46 (6%) Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 R ++M KCI CGLC E CP + +TR+ Y + Sbjct: 19 RQKPRYVEMDKCIACGLCAEKCPKKV---SNEYNAGLDTRKAAYIE 61 Score = 35.1 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 8/25 (32%), Positives = 9/25 (36%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 C C LC + CP AI Sbjct: 859 YRTDNCDGCALCVDVCPYLAISLED 883 >gi|331268523|ref|YP_004395015.1| glycerol dehydratase activator [Clostridium botulinum BKT015925] gi|329125073|gb|AEB75018.1| glycerol dehydratase activator [Clostridium botulinum BKT015925] Length = 313 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 12/61 (19%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + C+ C +C ++C AI + S + I+ KCI CG C E CP +A Sbjct: 63 YNKNLCVQCGVCNSVCSNYAINLNSENK------------IERDKCIGCGKCAEICPSEA 110 Query: 118 I 118 + Sbjct: 111 L 111 >gi|323474016|gb|ADX84622.1| 4Fe-4S ferredoxin, iron-sulfur binding domain [Sulfolobus islandicus REY15A] Length = 455 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 17/92 (18%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 L Y NG + AC +CE CP AI ++ + +ID IKC CGL Sbjct: 109 KPIYLSEYCNGLYK--ACNVCEFSCPYNAIKVD----------KKTGVNIDYIKCTSCGL 156 Query: 109 CQEACPVDAIVE-----GPNFEFATETRQELY 135 C +CPV AI FE A ++ Sbjct: 157 CVASCPVSAIQFPSLSQNSIFELAKVKGEKRI 188 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 22/68 (32%), Gaps = 7/68 (10%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 + L RC C+ C CP A+ + D D +CI C LC Sbjct: 290 PYILFEVSIDNNRCTLCESCVNWCPTSALKLRRDSGVE-------EIDFDPKRCIGCNLC 342 Query: 110 QEACPVDA 117 CP Sbjct: 343 VNVCPESC 350 >gi|323142351|ref|ZP_08077183.1| putative ferredoxin hydrogenase HydA1 [Phascolarctobacterium sp. YIT 12067] gi|322413235|gb|EFY04122.1| putative ferredoxin hydrogenase HydA1 [Phascolarctobacterium sp. YIT 12067] Length = 574 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 31/92 (33%), Gaps = 6/92 (6%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 + P+E+ + E L R ++CI C C IC + Sbjct: 120 DIPYERDVVDTPWNQEFPLIRDS---KKCIKCMRCVQICDKVQKLHIWDVQNTGARTTVD 176 Query: 95 R---YDIDMIKCIYCGLCQEACPVDAIVEGPN 123 I+ C CG C CPV A+ E + Sbjct: 177 VAGNVSIEDSDCSLCGQCITHCPVGALKERND 208 >gi|312876635|ref|ZP_07736616.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Caldicellulosiruptor lactoaceticus 6A] gi|311796588|gb|EFR12936.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Caldicellulosiruptor lactoaceticus 6A] Length = 373 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 10/57 (17%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 +C+ C +C C AIT+ + ID KC+ CG C C +A Sbjct: 194 SKCVGCGMCVKSCAQLAITLNEKKKAV----------IDYEKCVGCGQCVAVCQFEA 240 Score = 33.9 bits (76), Expect = 7.3, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 4/60 (6%) Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVR----YDIDMIKCIYCGLCQEACPVDAIVE 120 K E AI G + + I + KC+ CG+C ++C AI Sbjct: 154 HFKGHEMTGFGGAIKNIGMGSGSRGGKLFMHSSSKPVIKVSKCVGCGMCVKSCAQLAITL 213 >gi|288926953|ref|ZP_06420850.1| electron transport complex, RnfABCDGE type, B subunit [Prevotella buccae D17] gi|288336273|gb|EFC74657.1| electron transport complex, RnfABCDGE type, B subunit [Prevotella buccae D17] Length = 306 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 25/82 (30%), Gaps = 11/82 (13%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P + + E CI C CE C AITI Sbjct: 198 PKGRRVYVQCVNKDKGAVAKKACEVACIGCGKCEKECKFDAITITDNLSY---------- 247 Query: 97 DIDMIKCIYCGLCQEACPVDAI 118 ID KC C C + CP AI Sbjct: 248 -IDFNKCRLCTKCVDVCPTGAI 268 Score = 41.2 bits (95), Expect = 0.046, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 12/83 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI----------DMIKCIYCGL 108 E++C AC C CP IE + G R V+ + CI CG Sbjct: 172 DEDKCTACGACVKACPR--HIIELRKKGPKGRRVYVQCVNKDKGAVAKKACEVACIGCGK 229 Query: 109 CQEACPVDAIVEGPNFEFATETR 131 C++ C DAI N + + Sbjct: 230 CEKECKFDAITITDNLSYIDFNK 252 >gi|283851312|ref|ZP_06368594.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfovibrio sp. FW1012B] gi|283573262|gb|EFC21240.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfovibrio sp. FW1012B] Length = 765 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 21/70 (30%), Gaps = 10/70 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L RC CK C CP A+ + + +C CG C A Sbjct: 548 LSYPVFNFVRCTQCKRCTEECPFGALDDDEKGTPKP----------NPTRCRRCGTCMGA 597 Query: 113 CPVDAIVEGP 122 CP I Sbjct: 598 CPERVISFDN 607 >gi|322418616|ref|YP_004197839.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein [Geobacter sp. M18] gi|320125003|gb|ADW12563.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp. M18] Length = 428 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 7/64 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RC C C ICP AI + + + C+ CG+C CP A+ Sbjct: 288 DPARCTGCGRCTTICPVHAIAMVPQAAGS-------KAQLTSELCLGCGVCARNCPAGAV 340 Query: 119 VEGP 122 P Sbjct: 341 RLEP 344 Score = 40.5 bits (93), Expect = 0.076, Method: Composition-based stats. Identities = 10/24 (41%), Positives = 11/24 (45%) Query: 100 MIKCIYCGLCQEACPVDAIVEGPN 123 +C CG C CPV AI P Sbjct: 289 PARCTGCGRCTTICPVHAIAMVPQ 312 >gi|257065418|ref|YP_003145090.1| 4Fe-4S protein [Slackia heliotrinireducens DSM 20476] gi|256793071|gb|ACV23741.1| 4Fe-4S protein [Slackia heliotrinireducens DSM 20476] Length = 414 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/53 (33%), Positives = 20/53 (37%), Gaps = 11/53 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C C + AI E G + KCI CG C ACP AI Sbjct: 36 CLRCVEACTSGAIIYEDGE-----------LQVHPKKCIGCGTCATACPTSAI 77 Score = 42.0 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 7/61 (11%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C +C++C CP A+ R C+ C LC+ CP AI Sbjct: 311 DTDACTSCRMCTVFCPTGALFRVDEDDTWGVAHR-------ASACVQCRLCENLCPQHAI 363 Query: 119 V 119 Sbjct: 364 H 364 >gi|237653652|ref|YP_002889966.1| electron transport complex, RnfABCDGE type subunit beta [Thauera sp. MZ1T] gi|237624899|gb|ACR01589.1| electron transport complex, RnfABCDGE type, B subunit [Thauera sp. MZ1T] Length = 179 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 20/58 (34%), Gaps = 10/58 (17%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 CI C C CP AI + + + CI CG C E CP I Sbjct: 112 CIGCSRCIKSCPTDAILGATKQ----------LHVVLEEACIGCGACAEVCPTGGIDL 159 >gi|152991795|ref|YP_001357516.1| pyruvate flavodoxin oxidoreductase subunit delta [Sulfurovum sp. NBC37-1] gi|151423656|dbj|BAF71159.1| pyruvate:ferredoxin oxidoreductase, delta subunit [Sulfurovum sp. NBC37-1] Length = 151 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 21/58 (36%), Gaps = 10/58 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + CI C+ C C P +R ID C CG+C E CP + Sbjct: 75 NIDVCIDCQNCWVWC----------PDTSIISRDKQMLGIDYDHCKGCGVCVEVCPTN 122 >gi|149925367|ref|ZP_01913631.1| Formate dehydrogenase, alpha subunit [Limnobacter sp. MED105] gi|149825484|gb|EDM84692.1| Formate dehydrogenase, alpha subunit [Limnobacter sp. MED105] Length = 912 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 5/64 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114 + CI C C C + + G + +D + C+ CG C +ACP Sbjct: 146 NMDHCIQCTRCVRACR-EVQVNDVIGLAFRGEHAAIVFDQGDALAQSTCVACGECVQACP 204 Query: 115 VDAI 118 A+ Sbjct: 205 TGAL 208 >gi|18858217|ref|NP_572538.1| suppressor of rudimentary, isoform B [Drosophila melanogaster] gi|24640763|ref|NP_727320.1| suppressor of rudimentary, isoform C [Drosophila melanogaster] gi|10728539|gb|AAF46461.2| suppressor of rudimentary, isoform B [Drosophila melanogaster] gi|22831986|gb|AAN09247.1| suppressor of rudimentary, isoform C [Drosophila melanogaster] gi|24850449|gb|AAN64918.1| dihydropyrimidine dehydrogenase [Drosophila melanogaster] gi|189181839|gb|ACD81696.1| GH13260p [Drosophila melanogaster] Length = 1031 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 18/65 (27%), Gaps = 8/65 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP-VDA 117 ++ CI C C C + C C LC CP +D Sbjct: 949 DDDMCINCGKCYMTCA-------DSGYQAIEFDKDTHIPHVNDDCTGCTLCVSVCPIIDC 1001 Query: 118 IVEGP 122 I P Sbjct: 1002 ITMVP 1006 >gi|75910853|ref|YP_325149.1| bidirectional hydrogenase complex protein HoxU [Anabaena variabilis ATCC 29413] gi|1032477|emb|CAA55874.1| hydrogenase subunit [Anabaena variabilis ATCC 29413] gi|75704578|gb|ABA24254.1| NAD(P)-dependent nickel-iron dehydrogenase diaphorase component subunit HoxU [Anabaena variabilis ATCC 29413] Length = 238 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 22/65 (33%), Gaps = 4/65 (6%) Query: 59 GEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLCQEACP 114 RC+ C C +C A T + R + T C CG C ACP Sbjct: 144 DHNRCVLCTRCIRVCDEIEGAHTWDMAGRGTNSHVITDLSQPWGTSDTCTSCGKCVNACP 203 Query: 115 VDAIV 119 AI Sbjct: 204 TGAIF 208 >gi|86142077|ref|ZP_01060601.1| iron-sulfur cluster-binding protein [Leeuwenhoekiella blandensis MED217] gi|85831640|gb|EAQ50096.1| iron-sulfur cluster-binding protein [Leeuwenhoekiella blandensis MED217] Length = 529 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 32/94 (34%), Gaps = 15/94 (15%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 +CI+C C + C + +I C+ CG+C CP + Sbjct: 451 QCISCGNCSSYCEMGIDVRAYAQKGE---------NIVRASCVGCGICSAVCPRGVLKLE 501 Query: 122 PNFEFATETRQELYYDKERLLNNGDRWESEIVRN 155 +TE R +E LL N + +N Sbjct: 502 N---ASTEKR---INSREVLLGNDVDLMDYLNQN 529 >gi|315924015|ref|ZP_07920242.1| dihydroorotate dehydrogenase [Pseudoramibacter alactolyticus ATCC 23263] gi|315622641|gb|EFV02595.1| dihydroorotate dehydrogenase [Pseudoramibacter alactolyticus ATCC 23263] Length = 418 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 31/95 (32%), Gaps = 9/95 (9%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R L + +C+ C C C G + + R ID KC+ C Sbjct: 332 RSYKVLVQINED--KCVGCGRCYVSCYDG------GHQAIQFDSQARRATIDEDKCVGCH 383 Query: 108 LCQEACPVD-AIVEGPNFEFATETRQELYYDKERL 141 LC CPV I G E +L + L Sbjct: 384 LCLNVCPVMDCITPGKIVFKDGEAPHDLSLKTQYL 418 >gi|299771076|ref|YP_003733102.1| NADH:ubiquinone oxidoreductase, subunit RnfB [Acinetobacter sp. DR1] gi|298701164|gb|ADI91729.1| NADH:ubiquinone oxidoreductase, subunit RnfB [Acinetobacter sp. DR1] Length = 263 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 28/85 (32%), Gaps = 10/85 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E + G + E+ CI C C + CP AI + + I Sbjct: 68 ESSVWPVQTDGRPQRMKAIIREDECIGCTKCISACPVDAIIGSGK----------LMHTI 117 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPN 123 C C LC CPVD I + Sbjct: 118 LTDLCTGCELCIPPCPVDCIDLVED 142 >gi|224582936|ref|YP_002636734.1| polyferredoxin [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|224467463|gb|ACN45293.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] Length = 287 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 25/78 (32%), Gaps = 12/78 (15%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C C C CP I + I +C CG C CP A+ Sbjct: 190 PQECRMCGACWRSCPENVIQFDDD-----------TLTIAAARCTGCGGCAAVCPHQALR 238 Query: 120 EGPNFEFATETRQELYYD 137 + E A+ TR + Sbjct: 239 LRFDVEPAS-TRHSAVHT 255 Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 11/50 (22%) Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C +CPAQA ++ G ID +CI CG C CPVDAI Sbjct: 29 CADVCPAQAFSLAQGQVS-----------IDTTRCIACGDCLFVCPVDAI 67 >gi|222109235|ref|YP_002551499.1| 4fe-4S ferredoxin iron-sulfur-binding domain-containing protein [Acidovorax ebreus TPSY] gi|221728679|gb|ACM31499.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidovorax ebreus TPSY] Length = 77 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 2/65 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +RC C C +CP ++++ G +R+V +D C C LC CP DAI Sbjct: 12 DPQRCTGCGWCVGVCPPHVLSLQMQGPERFGPKRSVLHD--APGCTGCALCALRCPFDAI 69 Query: 119 VEGPN 123 N Sbjct: 70 RMVRN 74 >gi|213425327|ref|ZP_03358077.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Typhi str. E02-1180] Length = 281 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 25/78 (32%), Gaps = 12/78 (15%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C C C CP I + I +C CG C CP A+ Sbjct: 190 PQECRMCGACWRSCPENVIQFDDD-----------TLTIAAARCTGCGGCAAVCPHQALR 238 Query: 120 EGPNFEFATETRQELYYD 137 + E A+ TR + Sbjct: 239 LRFDVEPAS-TRHSAVHT 255 Score = 34.7 bits (78), Expect = 4.1, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID +CI CG C CPVDAI Sbjct: 47 IDTTRCIACGDCLFVCPVDAI 67 >gi|315231407|ref|YP_004071843.1| indolepyruvate oxidoreductase IorA-like subunit [Thermococcus barophilus MP] gi|315184435|gb|ADT84620.1| indolepyruvate oxidoreductase IorA-like subunit [Thermococcus barophilus MP] Length = 616 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 29/76 (38%), Gaps = 9/76 (11%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 P R E++C+ CK C + A+ + + ID + C Sbjct: 542 PVIRRGEIGETPTVIEDKCVGCKACILLTGCPALVYDPETN---------KVRIDPLICT 592 Query: 105 YCGLCQEACPVDAIVE 120 CG+C + CP +AI Sbjct: 593 GCGICNQLCPFEAIKF 608 >gi|158634530|gb|ABW76117.1| Fe-hydrogenase 2 [Trimastix pyriformis] Length = 292 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 6/63 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTR------RTVRYDIDMIKCIYCGLCQEA 112 + C+ C C+ +CP AI + P +ID KCI+CG CQ Sbjct: 149 DPDLCVRCGSCQKVCPYHAIVKLTVPCEEACPVGAIAKGANGHAEIDFNKCIHCGQCQVK 208 Query: 113 CPV 115 CP Sbjct: 209 CPF 211 Score = 42.0 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 5/61 (8%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTV-----RYDIDMIKCIYCGLCQEACPVDA 117 C C + P ++ + + ID C+ CG CQ+ CP A Sbjct: 108 CRNCTQNAYFVTNACQGCVARPCMSTCPKKAISRVDGQAKIDPDLCVRCGSCQKVCPYHA 167 Query: 118 I 118 I Sbjct: 168 I 168 >gi|160893288|ref|ZP_02074075.1| hypothetical protein CLOL250_00837 [Clostridium sp. L2-50] gi|156864980|gb|EDO58411.1| hypothetical protein CLOL250_00837 [Clostridium sp. L2-50] Length = 622 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 24/70 (34%), Gaps = 11/70 (15%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 R + CI C+ C A+ G ID C C LC + C Sbjct: 559 RCMHIDTDACIGCQKCIREIGCPALYTFEGKV-----------CIDESLCTGCTLCSQLC 607 Query: 114 PVDAIVEGPN 123 PV AI +G Sbjct: 608 PVHAIGDGQE 617 >gi|153811590|ref|ZP_01964258.1| hypothetical protein RUMOBE_01982 [Ruminococcus obeum ATCC 29174] gi|149832331|gb|EDM87416.1| hypothetical protein RUMOBE_01982 [Ruminococcus obeum ATCC 29174] Length = 298 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 36/107 (33%), Gaps = 12/107 (11%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 + E +CI C C ICP+ A I++G + Sbjct: 33 RCKWCHNPETWKKKSILSYTENKCIGCGQCIEICPSGAQQIQNGQHI-----------YE 81 Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGD 146 C CG C E C +A+ ++ ++ E EL RL + Sbjct: 82 RTLCTVCGKCVEICCTEALEIVGSY-YSVEELSELLLRDRRLYEISE 127 Score = 37.0 bits (84), Expect = 0.83, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 13/42 (30%) Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + ++ KCI CG C E CP A Sbjct: 29 GCNLRCKWCHNPETWKKKSILSYTENKCIGCGQCIEICPSGA 70 >gi|150400533|ref|YP_001324299.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanococcus aeolicus Nankai-3] gi|150013236|gb|ABR55687.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus aeolicus Nankai-3] Length = 654 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 25/79 (31%), Gaps = 7/79 (8%) Query: 59 GEERCIACKLCEAICPAQAIT-------IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 E +C C C +CP + I +Y ID CI C LC + Sbjct: 242 DEAKCTGCGQCAEVCPIEVPNEFDMGLGIRKAIYKPFPQAVPAKYTIDKEHCIGCELCSK 301 Query: 112 ACPVDAIVEGPNFEFATET 130 C AI E E Sbjct: 302 VCGPGAINYSQEPEIIEEK 320 Score = 36.2 bits (82), Expect = 1.3, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 22/75 (29%), Gaps = 7/75 (9%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R EE C C +C CP A + ++ C CG Sbjct: 569 RVNVEPIVAEVNEEICGVCGICVKQCPYGAPRLVEKDGT-------CSLEVLSALCKGCG 621 Query: 108 LCQEACPVDAIVEGP 122 C CP A+ + Sbjct: 622 TCIGGCPSGAMEQNH 636 >gi|78776475|ref|YP_392790.1| 4Fe-4S ferredoxin, iron-sulfur binding [Sulfurimonas denitrificans DSM 1251] gi|78497015|gb|ABB43555.1| 4Fe-4S ferredoxin, iron-sulfur binding [Sulfurimonas denitrificans DSM 1251] Length = 326 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 22/114 (19%), Positives = 33/114 (28%), Gaps = 12/114 (10%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 L F+ + K P S + AL + ++C C C + Sbjct: 201 LGLIFTGLFVVGSFIKKRFFCFFCP---MSAMHYIFSDAALLKLKKDGDKCTKCGDCYNV 257 Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 C Q I + +I CI+C C ACP D + Sbjct: 258 CDMQIKDIADDVKST---------NILRDDCIFCMKCVAACPEDDALHVDILNM 302 >gi|81301193|ref|YP_401401.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Synechococcus elongatus PCC 7942] gi|81170074|gb|ABB58414.1| Pyruvate:ferredoxin (flavodoxin) oxidoreductase [Synechococcus elongatus PCC 7942] Length = 1196 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 22/73 (30%), Gaps = 16/73 (21%) Query: 58 NGEERCIACKLCEAICPAQ---AITIESG-------------PRCHDGTRRTVRYDIDMI 101 + C+ C C +CP A ES R + R + Sbjct: 684 WEPDLCVQCGKCLLVCPHGVIRAKVYESEVLEAAPETFKHAPARDATWSDRPFTIQVSTE 743 Query: 102 KCIYCGLCQEACP 114 C C LC E CP Sbjct: 744 DCTGCQLCVEVCP 756 >gi|89897072|ref|YP_520559.1| hypothetical protein DSY4326 [Desulfitobacterium hafniense Y51] gi|89336520|dbj|BAE86115.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 460 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 25/71 (35%), Gaps = 6/71 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110 + RC+ C LC CP AI P + + I C CG C Sbjct: 124 FIDQTRCVECGLCARNCPYHAIIEYRRPCEDSCPTKAISVREDRIASIAEAHCTSCGKCI 183 Query: 111 EACPVDAIVEG 121 +CP A+ E Sbjct: 184 ISCPFGAVAES 194 Score = 42.4 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 5/63 (7%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-----IDMIKCIYCGLCQEACPVDA 117 C C++ + ++ + + ID +C+ CGLC CP A Sbjct: 85 CNGCEMHRYSVTDHCQNCVGHFCFTNCPKKAILFINNKAFIDQTRCVECGLCARNCPYHA 144 Query: 118 IVE 120 I+E Sbjct: 145 IIE 147 >gi|56751730|ref|YP_172431.1| pyruvate flavodoxin oxidoreductase [Synechococcus elongatus PCC 6301] gi|56686689|dbj|BAD79911.1| pyruvate flavodoxin oxidoreductase [Synechococcus elongatus PCC 6301] Length = 1196 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 22/73 (30%), Gaps = 16/73 (21%) Query: 58 NGEERCIACKLCEAICPAQ---AITIESG-------------PRCHDGTRRTVRYDIDMI 101 + C+ C C +CP A ES R + R + Sbjct: 684 WEPDLCVQCGKCLLVCPHGVIRAKVYESEVLEAAPETFKHAPARDATWSDRPFTIQVSTE 743 Query: 102 KCIYCGLCQEACP 114 C C LC E CP Sbjct: 744 DCTGCQLCVEVCP 756 >gi|219667057|ref|YP_002457492.1| hydrogenase large subunit domain protein [Desulfitobacterium hafniense DCB-2] gi|219537317|gb|ACL19056.1| hydrogenase large subunit domain protein [Desulfitobacterium hafniense DCB-2] Length = 454 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 25/71 (35%), Gaps = 6/71 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQ 110 + RC+ C LC CP AI P + + I C CG C Sbjct: 118 FIDQTRCVECGLCARNCPYHAIIEYRRPCEDSCPTKAISVREDRIASIAEAHCTSCGKCI 177 Query: 111 EACPVDAIVEG 121 +CP A+ E Sbjct: 178 ISCPFGAVAES 188 Score = 42.4 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 5/63 (7%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-----IDMIKCIYCGLCQEACPVDA 117 C C++ + ++ + + ID +C+ CGLC CP A Sbjct: 79 CNGCEMHRYSVTDHCQNCVGHFCFTNCPKKAILFINNKAFIDQTRCVECGLCARNCPYHA 138 Query: 118 IVE 120 I+E Sbjct: 139 IIE 141 >gi|328952049|ref|YP_004369383.1| fumarate reductase/succinate dehydrogenase flavoprotein domain protein [Desulfobacca acetoxidans DSM 11109] gi|328452373|gb|AEB08202.1| fumarate reductase/succinate dehydrogenase flavoprotein domain protein [Desulfobacca acetoxidans DSM 11109] Length = 1014 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 23/67 (34%), Gaps = 11/67 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C AC +C CP I ID KC CG+C CP AI Sbjct: 943 DGEICAACLICVRACPFDVPFINDKGYSE----------IDPAKCHGCGVCAAECPAKAI 992 Query: 119 VEGPNFE 125 FE Sbjct: 993 QLM-QFE 998 >gi|325841965|ref|ZP_08167542.1| 4Fe-4S binding domain protein [Turicibacter sp. HGF1] gi|325489798|gb|EGC92153.1| 4Fe-4S binding domain protein [Turicibacter sp. HGF1] Length = 428 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 2/64 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C+ C C CP AI+ + Y ++ C+ CG+C AC +I Sbjct: 294 NHETCVKCGRCLRDCPIDAIS--KVKVDEGKSTERFEYQVNEEVCLGCGVCVSACFNKSI 351 Query: 119 VEGP 122 + Sbjct: 352 MLKN 355 >gi|313682982|ref|YP_004060720.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Sulfuricurvum kujiense DSM 16994] gi|313155842|gb|ADR34520.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Sulfuricurvum kujiense DSM 16994] Length = 1188 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 25/91 (27%), Gaps = 25/91 (27%) Query: 58 NGEERCIACKLCEAICPA--------QAITIESGPR---------CHDGTRRTVRYDIDM 100 + CI C C CP A ++ P + G + + Sbjct: 689 WDADTCIQCNKCVLACPHSVIRSSVFDASYLQGAPEGFSAKGAKGKNFGDNDVFAISVAV 748 Query: 101 IKCIYCGLCQEACPV--------DAIVEGPN 123 C C LC E CP AI P Sbjct: 749 EDCTGCALCVEVCPAKNKSQTNLKAINMMPQ 779 >gi|308485667|ref|XP_003105032.1| CRE-ABCE-1 protein [Caenorhabditis remanei] gi|308257353|gb|EFP01306.1| CRE-ABCE-1 protein [Caenorhabditis remanei] Length = 610 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 29/83 (34%), Gaps = 1/83 (1%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 KG + LR ++RC K C C G C + I Sbjct: 4 KGPLVKNNETDQPLRIAIVEKDRCKP-KNCGLACKKACPVNRQGKLCIVVEATSTISSIS 62 Query: 100 MIKCIYCGLCQEACPVDAIVEGP 122 I CI CG+C + CP DAI Sbjct: 63 EILCIGCGICVKKCPYDAIKIIN 85 >gi|260892206|ref|YP_003238303.1| hydrogenase, Fe-only [Ammonifex degensii KC4] gi|260864347|gb|ACX51453.1| hydrogenase, Fe-only [Ammonifex degensii KC4] Length = 549 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 29/92 (31%), Gaps = 14/92 (15%) Query: 38 FEKGSTSPRFRGEHALRRYP----NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93 G+ RG + + +C+ C C IC R Sbjct: 59 DVAGTWPAHVRGRVPIDPNNPSIMRDDRKCVLCGQCLEICH----------RVQSVYGYY 108 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 D I CI CG C ACP AI E + E Sbjct: 109 ELPIRDDIVCINCGQCSLACPTGAIQERDDTE 140 >gi|237709522|ref|ZP_04540003.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. 9_1_42FAA] gi|229456578|gb|EEO62299.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. 9_1_42FAA] Length = 300 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 15/80 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++C+ C C +CP A+T+ D KC+ CG C E CP AI Sbjct: 49 KKCLGCGTCLKVCPNGALTLTPEGIVTDKQ-----------KCVLCGRCAEECPAMAIEI 97 Query: 121 GPNFEFATETRQELYYDKER 140 T + L ++ E+ Sbjct: 98 SG----TEYTAEYLIHEIEK 113 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 15/39 (38%) Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +G R KC+ CG C + CP A+ P Sbjct: 33 HNPEGIRNGKDKLYTAKKCLGCGTCLKVCPNGALTLTPE 71 >gi|226947232|ref|YP_002802323.1| iron-sulfur cluster-binding protein [Clostridium botulinum A2 str. Kyoto] gi|226841217|gb|ACO83883.1| iron-sulfur cluster-binding protein [Clostridium botulinum A2 str. Kyoto] Length = 387 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 5/58 (8%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+CI C C +CP + I + +M KCI C CQE CP AI Sbjct: 319 EKCIGCNRCAEVCPEKPYVINMIKKGGKKIPVW-----NMKKCIRCFCCQELCPKGAI 371 >gi|217966958|ref|YP_002352464.1| hydrogenase, Fe-only [Dictyoglomus turgidum DSM 6724] gi|217336057|gb|ACK41850.1| hydrogenase, Fe-only [Dictyoglomus turgidum DSM 6724] Length = 666 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 3/70 (4%) Query: 59 GEERCIACKLCEAICPAQ---AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 +CI C C +C A +G + + ++C+YCG C CP Sbjct: 140 DNTKCILCGDCVRVCEEVQGVAAIDIAGRGFLSKVTPAFGHSLSEVECVYCGQCVAYCPT 199 Query: 116 DAIVEGPNFE 125 A+ + + Sbjct: 200 GALSIRNDID 209 >gi|168243307|ref|ZP_02668239.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194449267|ref|YP_002046585.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|198245772|ref|YP_002216591.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205353626|ref|YP_002227427.1| polyferredoxin [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207857935|ref|YP_002244586.1| polyferredoxin [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|194407571|gb|ACF67790.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|197940288|gb|ACH77621.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|205273407|emb|CAR38382.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205337655|gb|EDZ24419.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|206709738|emb|CAR34090.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|326624347|gb|EGE30692.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326628726|gb|EGE35069.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 287 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 22/73 (30%), Gaps = 11/73 (15%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C C C CP I + I +C CG C CP A+ Sbjct: 190 PQECRMCGACWRSCPENVIQFDDN-----------TLTIAAARCTGCGGCAAVCPHQALR 238 Query: 120 EGPNFEFATETRQ 132 + E A+ Sbjct: 239 LRFDVEPASTRHS 251 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 11/50 (22%) Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C +CPAQA ++ G ID +CI CG C CPVDAI Sbjct: 29 CADVCPAQAFSLAQGQVS-----------IDTTRCIACGDCLFVCPVDAI 67 >gi|166712771|ref|ZP_02243978.1| ferredoxin [Xanthomonas oryzae pv. oryzicola BLS256] Length = 142 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 31/85 (36%), Gaps = 11/85 (12%) Query: 39 EKGSTSPRFRGEHAL-RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 R RG + L + E CI C C CP AI G + + Sbjct: 66 VPARPYDRSRGAYKLPQVAWIVEADCIGCTKCIQACPVDAIV---------GGAKHMHTV 116 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 I + C C LC ACPVD I P Sbjct: 117 IAPL-CTGCELCLPACPVDCIQLHP 140 >gi|139438187|ref|ZP_01771740.1| Hypothetical protein COLAER_00728 [Collinsella aerofaciens ATCC 25986] gi|133776384|gb|EBA40204.1| Hypothetical protein COLAER_00728 [Collinsella aerofaciens ATCC 25986] Length = 417 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 25/64 (39%), Gaps = 10/64 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 ++C +C C +CP A + R + ++ C+ CG C + CP Sbjct: 312 ECDFDKCTSCGECVNVCPTFACDLVGSGR----------FALESTYCLGCGACVKVCPEH 361 Query: 117 AIVE 120 A+ Sbjct: 362 ALKL 365 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 13/55 (23%), Positives = 18/55 (32%), Gaps = 2/55 (3%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 I C C+ + + + C CGLC ACP +AI Sbjct: 53 IPCLACKN-EKSGCTACM-DVCPVNAIEIEEDAIEILDSCRKCGLCAAACPTEAI 105 >gi|134045159|ref|YP_001096645.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanococcus maripaludis C5] gi|132662784|gb|ABO34430.1| membrane-bound hydrogenase subunit ehaR [Methanococcus maripaludis C5] Length = 252 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 10/77 (12%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 + L+++ EE CI C +CE CP AI +E + DI++ C+ C Sbjct: 119 HRKIRLKKHELDEESCIKCGICERFCPTSAIKVE----------KRTSIDINLDLCMGCT 168 Query: 108 LCQEACPVDAIVEGPNF 124 C++ CP +I Sbjct: 169 ACEKVCPKSSIKVENEM 185 Score = 42.0 bits (97), Expect = 0.031, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 30/83 (36%), Gaps = 11/83 (13%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + CI C +C ICP AI E G Sbjct: 174 CPKSSIKVENEMGEIPTENVISLNNDTCINCMVCSEICPVGAIIYEDG-----------L 222 Query: 96 YDIDMIKCIYCGLCQEACPVDAI 118 +D KCI+CG C++ CPV AI Sbjct: 223 MKLDDKKCIFCGKCEKNCPVTAI 245 Score = 40.1 bits (92), Expect = 0.091, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 9/82 (10%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 E + R +C+ C+LC +CP QAI S + Sbjct: 23 EESVKKKLQDIIVPVERNLYVETNKCVRCELCYEVCPVQAIKEPSVKSPA---------E 73 Query: 98 IDMIKCIYCGLCQEACPVDAIV 119 I KC+ C +C + CPV AI Sbjct: 74 IIPEKCVKCEICAKTCPVGAIN 95 Score = 38.5 bits (88), Expect = 0.32, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 15/74 (20%) Query: 60 EERCIACKLCEAICPAQAI---------------TIESGPRCHDGTRRTVRYDIDMIKCI 104 E+C+ C++C CP AI R ++++D CI Sbjct: 76 PEKCVKCEICAKTCPVGAINVLEGRAELKDDNVIYELKEIDVTHRKIRLKKHELDEESCI 135 Query: 105 YCGLCQEACPVDAI 118 CG+C+ CP AI Sbjct: 136 KCGICERFCPTSAI 149 >gi|146303327|ref|YP_001190643.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Metallosphaera sedula DSM 5348] gi|145701577|gb|ABP94719.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Metallosphaera sedula DSM 5348] Length = 610 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 28/91 (30%), Gaps = 4/91 (4%) Query: 27 FFKAKTT--INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84 F + T + + S + + CI C C ++CP A + Sbjct: 246 FIRKDVTKFVALSNKPLDLSSLTLDPFSDENSQDLFSGCILCGKCVSVCPHVAQRGDKDY 305 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 + + C CG C + CPV Sbjct: 306 SPLGFFVSGMSKE--YANCHLCGRCDDVCPV 334 Score = 35.1 bits (79), Expect = 3.6, Method: Composition-based stats. Identities = 8/22 (36%), Positives = 10/22 (45%) Query: 103 CIYCGLCQEACPVDAIVEGPNF 124 CI CG C CP A ++ Sbjct: 284 CILCGKCVSVCPHVAQRGDKDY 305 >gi|147918974|ref|YP_687300.1| 4(4Fe-4S) polyferredoxin [uncultured methanogenic archaeon RC-I] gi|110622696|emb|CAJ37974.1| 4(4Fe-4S) polyferredoxin [uncultured methanogenic archaeon RC-I] Length = 138 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 25/72 (34%), Gaps = 3/72 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + CI C C CP A + + +D KC+ CG C + CP Sbjct: 43 PDVHKIRICIQCGRCADACPMDAFYQDFNLLTTSEQ---GIFRLDEDKCVGCGECVQVCP 99 Query: 115 VDAIVEGPNFEF 126 + + P+ Sbjct: 100 TNVLQFFPDIRM 111 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 27/65 (41%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI C CEAIC + + R + CI CG C +ACP+DA Sbjct: 7 NDNVCIHCHRCEAICTWAHESAFNPKRGRIIVDLEFPDVHKIRICIQCGRCADACPMDAF 66 Query: 119 VEGPN 123 + N Sbjct: 67 YQDFN 71 >gi|78222251|ref|YP_383998.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Geobacter metallireducens GS-15] gi|78193506|gb|ABB31273.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Geobacter metallireducens GS-15] Length = 74 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 21/58 (36%), Gaps = 11/58 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C C CP AI + ID CI CG C + CP AI Sbjct: 25 DDCTNCGSCVDSCPVNAIAPAGDK-----------HKIDGDTCIDCGACVDTCPTSAI 71 >gi|146295766|ref|YP_001179537.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145409342|gb|ABP66346.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 373 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 10/57 (17%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 +C+ C +C C AIT+ + ID KC+ CG C C +A Sbjct: 194 SKCVGCGMCVKSCAQFAITLSEKKKAV----------IDYEKCVGCGQCVAVCQFEA 240 Score = 35.5 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 4/61 (6%) Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVR----YDIDMIKCIYCGLCQEACPVDAIVE 120 K E AI G + + I KC+ CG+C ++C AI Sbjct: 154 HFKGHEMTGFGGAIKNIGMGSGSRGGKLFMHSSSKPVIKTSKCVGCGMCVKSCAQFAITL 213 Query: 121 G 121 Sbjct: 214 S 214 >gi|300854656|ref|YP_003779640.1| iron only hydrogenase [Clostridium ljungdahlii DSM 13528] gi|300434771|gb|ADK14538.1| iron only hydrogenase [Clostridium ljungdahlii DSM 13528] Length = 578 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 29/70 (41%), Gaps = 3/70 (4%) Query: 57 PNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEAC 113 ++CI C+ CE +C Q + S T + + + +C +CG C C Sbjct: 145 YRNLDKCIMCRRCETMCNEVQTCQVYSAVDRGFETVVSPAFGRPMVDTQCTFCGQCVSVC 204 Query: 114 PVDAIVEGPN 123 P A+ + N Sbjct: 205 PTAALTQVSN 214 >gi|170756030|ref|YP_001779637.1| iron-sulfur cluster-binding protein [Clostridium botulinum B1 str. Okra] gi|169121242|gb|ACA45078.1| iron-sulfur cluster-binding protein [Clostridium botulinum B1 str. Okra] Length = 387 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 5/58 (8%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+CI C C +CP + I + +M KCI C CQE CP AI Sbjct: 319 EKCIGCNRCAEVCPEKPYVINMIEKGGKKIPVW-----NMKKCIRCFCCQELCPKGAI 371 >gi|150020242|ref|YP_001305596.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Thermosipho melanesiensis BI429] gi|149792763|gb|ABR30211.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Thermosipho melanesiensis BI429] Length = 110 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 28/87 (32%), Positives = 31/87 (35%), Gaps = 15/87 (17%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G + R + E CI C +C CP QAI IE Y C CGL Sbjct: 28 GTWRVIRPVHQPENCIHCMMCWLYCPDQAIVIEVVDGKPKMKGYNYYY------CKGCGL 81 Query: 109 CQEACP---------VDAIVEGPNFEF 126 C CP AIV P EF Sbjct: 82 CANVCPKTNDKLPEEKRAIVMKPETEF 108 >gi|84623478|ref|YP_450850.1| ferredoxin [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84367418|dbj|BAE68576.1| ferredoxin II [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 142 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 31/85 (36%), Gaps = 11/85 (12%) Query: 39 EKGSTSPRFRGEHAL-RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 R RG H L + E CI C C CP AI G + + Sbjct: 66 VPARPYDRSRGAHKLPQVAWIVEADCIGCTKCIHACPVDAIV---------GGAKHMHTV 116 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 I + C C LC ACPVD I P Sbjct: 117 IAPL-CTGCELCLPACPVDCIELHP 140 >gi|313113355|ref|ZP_07798947.1| 4Fe-4S binding domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310624331|gb|EFQ07694.1| 4Fe-4S binding domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 256 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 25/116 (21%), Positives = 40/116 (34%), Gaps = 18/116 (15%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 F + + F G +P F + CI C C +CP I +E+G Sbjct: 152 EFPPPRENLYDRFMSGPVNPVFYRFFVKADAFRVTDACIGCGKCVELCPLNNIRLENGKP 211 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERL 141 + C +C C CP +AI E+ +++ + Y E L Sbjct: 212 ------------VWGKNCTHCMACICYCPKEAI------EYGKKSKGKPRYHFEEL 249 >gi|302872613|ref|YP_003841249.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Caldicellulosiruptor obsidiansis OB47] gi|302575472|gb|ADL43263.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Caldicellulosiruptor obsidiansis OB47] Length = 373 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 10/57 (17%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 +C+ C +C C AIT+ + ID KC+ CG C C A Sbjct: 194 SKCVGCGMCVKSCAQLAITLNEKKKAA----------IDYEKCVGCGQCVAVCQFGA 240 Score = 33.9 bits (76), Expect = 6.8, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 4/60 (6%) Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVR----YDIDMIKCIYCGLCQEACPVDAIVE 120 K E AI G + + I + KC+ CG+C ++C AI Sbjct: 154 HFKGHEMTGFGGAIKNIGMGSGSRGGKLFMHSSSKPVIKVSKCVGCGMCVKSCAQLAITL 213 >gi|299742347|ref|XP_001832405.2| RNAse L inhibitor-type ATP binding cassette protein [Coprinopsis cinerea okayama7#130] gi|298405142|gb|EAU89439.2| RNAse L inhibitor-type ATP binding cassette protein [Coprinopsis cinerea okayama7#130] Length = 589 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 1/60 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RC K C C ++ G C + I CI CG+C + CP +AI Sbjct: 12 DSNRCKP-KRCAQECKKSCPVVKMGKLCIEVKPSDKIAFISEFLCIGCGICVKKCPFEAI 70 >gi|297616530|ref|YP_003701689.1| cobyrinic acid ac-diamide synthase [Syntrophothermus lipocalidus DSM 12680] gi|297144367|gb|ADI01124.1| Cobyrinic acid ac-diamide synthase [Syntrophothermus lipocalidus DSM 12680] Length = 285 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 29/81 (35%), Gaps = 15/81 (18%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 A RR E+C+ C+LC IC AI+ Y + + Sbjct: 47 PQPRESEAFSASRRAWLDPEKCVKCELCMEICRFGAISD---------------YQVSDL 91 Query: 102 KCIYCGLCQEACPVDAIVEGP 122 C CG C CPV+AI Sbjct: 92 DCEGCGFCSRICPVEAIRMED 112 >gi|292492764|ref|YP_003528203.1| electron transport complex, RnfABCDGE type subunit beta [Nitrosococcus halophilus Nc4] gi|291581359|gb|ADE15816.1| electron transport complex, RnfABCDGE type, B subunit [Nitrosococcus halophilus Nc4] Length = 209 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E RCI C LC CP AI + + + +C C LC CPVD I Sbjct: 108 DENRCIGCTLCIQACPVDAILGAAKQ----------LHTVIAAECTGCELCVAPCPVDCI 157 Query: 119 VEGP 122 P Sbjct: 158 EMVP 161 Score = 37.8 bits (86), Expect = 0.55, Method: Composition-based stats. Identities = 14/21 (66%), Positives = 16/21 (76%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID +CI C LC +ACPVDAI Sbjct: 107 IDENRCIGCTLCIQACPVDAI 127 >gi|301092714|ref|XP_002997210.1| ATP-binding cassette sub-family E member 1 [Phytophthora infestans T30-4] gi|262111520|gb|EEY69572.1| ATP-binding cassette sub-family E member 1 [Phytophthora infestans T30-4] Length = 626 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 22/56 (39%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 K C C + G C + ++ I CI CG+C + CP +AI Sbjct: 19 KKCRQECKKSCPVVRMGKLCIEVGPKSKVAFISEQLCIGCGICVKKCPFEAINIIN 74 >gi|260576447|ref|ZP_05844437.1| formate dehydrogenase, alpha subunit [Rhodobacter sp. SW2] gi|259021330|gb|EEW24636.1| formate dehydrogenase, alpha subunit [Rhodobacter sp. SW2] Length = 958 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 4/70 (5%) Query: 55 RYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + +CI C C C A+TI+ C+ CG C Sbjct: 171 YFTYDPAKCIVCSRCVRACEEVQGTFALTIQGRGFDSRVVAGMTGDTFLTSDCVSCGACV 230 Query: 111 EACPVDAIVE 120 +ACP + E Sbjct: 231 QACPTATLQE 240 >gi|218883519|ref|YP_002427901.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Desulfurococcus kamchatkensis 1221n] gi|218765135|gb|ACL10534.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Desulfurococcus kamchatkensis 1221n] Length = 160 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 9/56 (16%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 I C +C + CP AI+ +R ++ KCI CG+C CP AI Sbjct: 40 IPCNICVSACPFNAIS---------KSRIYEVPRLNPDKCIGCGVCVGKCPGLAIF 86 >gi|167630112|ref|YP_001680611.1| 4fe-4S ferredoxin, iron-sulfur binding domain protein [Heliobacterium modesticaldum Ice1] gi|167592852|gb|ABZ84600.1| 4fe-4S ferredoxin, iron-sulfur binding domain protein [Heliobacterium modesticaldum Ice1] Length = 373 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 12/59 (20%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++C C C CP AI++ R I +CI CG C CP AI Sbjct: 190 NDKCKVCGKCLRWCPVDAISLGE------------RAVIAGERCIGCGECTVTCPHKAI 236 Score = 35.1 bits (79), Expect = 3.3, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 22/68 (32%), Gaps = 3/68 (4%) Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM---IKCIYCGLCQEACPVDAIVEG 121 K E AI + + D+ KC CG C CPVDAI G Sbjct: 152 HFKGHEMTGFGGAIKNLAMGLASRSGKLVQHQDVKPEVNDKCKVCGKCLRWCPVDAISLG 211 Query: 122 PNFEFATE 129 A E Sbjct: 212 ERAVIAGE 219 >gi|152992108|ref|YP_001357829.1| ferredoxin-like protein [Sulfurovum sp. NBC37-1] gi|151423969|dbj|BAF71472.1| ferredoxin-like protein [Sulfurovum sp. NBC37-1] Length = 383 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 26/114 (22%), Positives = 39/114 (34%), Gaps = 19/114 (16%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 L + F L+ P E E + +E C C++C I Sbjct: 229 LPDKRKILFTTLKRAGVPDVFEVLPEE----------EISFVSQKYVDENCTNCQICYRI 278 Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 CP A++ + + D + C+ C LC +AC DAI FE Sbjct: 279 CPTGALSSDG---------KFSLIHFDAMLCLKCRLCHDACEPDAIHLQKGFEI 323 >gi|148244307|ref|YP_001219001.1| electron transport complex protein RnfB [Candidatus Vesicomyosocius okutanii HA] gi|146326134|dbj|BAF61277.1| electron transport complex protein RnfB [Candidatus Vesicomyosocius okutanii HA] Length = 181 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 25/81 (30%), Gaps = 10/81 (12%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E + E+ CI C LC CP A S + Sbjct: 91 ETLELNAEHGETKPSHVVFVDEQACIGCTLCIQACPVDAFVGASKMMT----------QV 140 Query: 99 DMIKCIYCGLCQEACPVDAIV 119 + +C C LC CPVD I Sbjct: 141 IINECTGCDLCIPVCPVDCIY 161 >gi|15679252|ref|NP_276369.1| polyferredoxin [Methanothermobacter thermautotrophicus str. Delta H] gi|2622353|gb|AAB85730.1| polyferredoxin [Methanothermobacter thermautotrophicus str. Delta H] Length = 448 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 29/60 (48%), Gaps = 3/60 (5%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +RCI C+ C CP AI + + T+ ID CI CGLC + CP DAI Sbjct: 353 DTDRCILCEKCGIHCPVDAIPRTTMKKRSIKGGFTL---IDPRLCIGCGLCLDVCPEDAI 409 Score = 40.5 bits (93), Expect = 0.072, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 10/91 (10%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93 I+ P + + + CI C LC +CP AI+ + Sbjct: 365 IHCPVDAIPRTTMKKRSIKGGFTLIDPRLCIGCGLCLDVCPEDAISRDESG--------- 415 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 +D KCI+CG C CP A++ F Sbjct: 416 -LMIVDDDKCIHCGACSNICPARAVIFEREF 445 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 24/94 (25%), Positives = 32/94 (34%), Gaps = 10/94 (10%) Query: 39 EKGSTSPRFRGEHALRRYP-NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY- 96 K R A R +RC C+ C+ CP AI +++G R Sbjct: 128 VKPPVKRTPRSHEATRVNVVTDTDRCTLCRRCQYYCPTGAIIVDTGEGVCTECRVCEDVC 187 Query: 97 --------DIDMIKCIYCGLCQEACPVDAIVEGP 122 +ID KC C C CP +AI Sbjct: 188 PVGAIEDLEIDPEKCTLCLKCMRECPSNAIYIDD 221 Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 11/74 (14%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R +R + E CI+C +C +CP AIT+ R ++D +CI C Sbjct: 313 RSFQTVRWDGSVSEDCISCGICSELCPVDAITL-----------RRGSIEVDTDRCILCE 361 Query: 108 LCQEACPVDAIVEG 121 C CPVDAI Sbjct: 362 KCGIHCPVDAIPRT 375 Score = 37.4 bits (85), Expect = 0.71, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 10/72 (13%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 A+R CI C C CP +AI R Y +D KC CG+C+ Sbjct: 23 EAIRMIDGRAFSCITCGACMEACPNKAIRRN----------RYGGYVVDRAKCNACGVCE 72 Query: 111 EACPVDAIVEGP 122 CPV++I Sbjct: 73 MTCPVNSIKIED 84 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 2/71 (2%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 A+ E+C C C CP+ AI I+ R R + ++ C+ CGLC E Sbjct: 191 AIEDLEIDPEKCTLCLKCMRECPSNAIYIDDFKVKIR--RAEDRGEGSIVSCLNCGLCAE 248 Query: 112 ACPVDAIVEGP 122 +C A+ Sbjct: 249 SCERGALRMVD 259 Score = 35.5 bits (80), Expect = 2.3, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 21/67 (31%), Gaps = 9/67 (13%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 C++C C +C R CI CG+C E C Sbjct: 288 MVDGELRGYCVSCGRCVNVCDVSEARSFQTVRWDGSV---------SEDCISCGICSELC 338 Query: 114 PVDAIVE 120 PVDAI Sbjct: 339 PVDAITL 345 Score = 34.3 bits (77), Expect = 5.3, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 14/62 (22%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 Y +C AC +CE CP +I IE G C CGLC +ACP+ Sbjct: 58 YVVDRAKCNACGVCEMTCPVNSIKIEDGVVKGI--------------CARCGLCVDACPL 103 Query: 116 DA 117 A Sbjct: 104 GA 105 >gi|150018600|ref|YP_001310854.1| ferredoxin [Clostridium beijerinckii NCIMB 8052] gi|149905065|gb|ABR35898.1| ferredoxin [Clostridium beijerinckii NCIMB 8052] Length = 702 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 20/65 (30%), Gaps = 4/65 (6%) Query: 59 GEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 RC+AC C C + + + C +CG C E CP Sbjct: 144 DLNRCVACGRCVRACNDIRGVGILDYDKNEEDRIYVGVKNGLSLSDANCRFCGACVEVCP 203 Query: 115 VDAIV 119 A+ Sbjct: 204 TGALQ 208 >gi|329955029|ref|ZP_08296010.1| ferredoxin [Bacteroides clarus YIT 12056] gi|328526319|gb|EGF53334.1| ferredoxin [Bacteroides clarus YIT 12056] Length = 321 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 8/81 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------DMIKCIYCGLCQ 110 E +C AC C CP I I + + CI CG C Sbjct: 169 DEAKCTACGACAKACPRSIIEIRPQGKKSRRVYVQCVNKDKGAVARKACTVACIGCGKCV 228 Query: 111 EACPVDAIVEGPNFEFATETR 131 + CP +AI N + + Sbjct: 229 KVCPFEAITLENNLAYIDPNK 249 Score = 42.4 bits (98), Expect = 0.020, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 22/61 (36%), Gaps = 9/61 (14%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C C C AI + ++D KC CG C +ACP I P Sbjct: 142 CLGCGDCVVACQFDAIHMNPETGLP---------EVDEAKCTACGACAKACPRSIIEIRP 192 Query: 123 N 123 Sbjct: 193 Q 193 Score = 40.5 bits (93), Expect = 0.091, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 11/60 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C C +CP +AIT+E+ ID KC C C+E CP I Sbjct: 217 CTVACIGCGKCVKVCPFEAITLENNLAY-----------IDPNKCKSCRKCEEVCPQGTI 265 >gi|312794392|ref|YP_004027315.1| 4fe-4S ferredoxin iron-sulfur binding domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181532|gb|ADQ41702.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Caldicellulosiruptor kristjanssonii 177R1B] Length = 373 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 10/57 (17%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 +C+ C +C C AIT+ + ID KC+ CG C C +A Sbjct: 194 SKCVGCGMCVKSCAQLAITLNEKKKAV----------IDYEKCVGCGQCVAVCQFEA 240 Score = 33.9 bits (76), Expect = 7.6, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 4/60 (6%) Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVR----YDIDMIKCIYCGLCQEACPVDAIVE 120 K E AI G + + I + KC+ CG+C ++C AI Sbjct: 154 HFKGHEMTGFGGAIKNIGMGSGSRGGKLFMHSSSKPVIKVSKCVGCGMCVKSCAQLAITL 213 >gi|301061640|ref|ZP_07202397.1| bidirectional hydrogenase complex protein HoxU family protein [delta proteobacterium NaphS2] gi|300444277|gb|EFK08285.1| bidirectional hydrogenase complex protein HoxU family protein [delta proteobacterium NaphS2] Length = 368 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 28/85 (32%), Gaps = 2/85 (2%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYD 97 + + CI C C +C A + R + + Sbjct: 169 PPYVPSSDPIVDEDSLFKRAYDLCIGCLRCVRVCREIRGADALAFTVRDGRVVVGSNQPS 228 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 + C YCG+C E CP A+++G Sbjct: 229 LKESGCKYCGVCVEVCPTGALLDGD 253 >gi|242241404|ref|YP_002989585.1| oxidoreductase Fe-S binding subunit [Dickeya dadantii Ech703] gi|242133461|gb|ACS87763.1| glutamate synthase, small subunit [Dickeya dadantii Ech703] Length = 671 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 33/85 (38%), Gaps = 15/85 (17%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACK--LCEAICPAQAITIESGPRCHDGTRRT 93 YP K PR R H + + C C+ C ++CP QA+ R+ Sbjct: 31 YPESKEHFKPRIRVFH--QAERHTAVTCRHCEDAPCASVCPTQALV-----------RKN 77 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAI 118 + KCI C C ACP AI Sbjct: 78 ESIQLIQEKCIGCKTCVLACPFGAI 102 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 5/73 (6%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 +E+CI CK C CP AI++E+ + + D + C ACP A+ Sbjct: 84 QEKCIGCKTCVLACPFGAISVETQQGTATAHKCDLCADRAEGQ-----ACVAACPTQALQ 138 Query: 120 EGPNFEFATETRQ 132 + R+ Sbjct: 139 LVSERSLEEQRRE 151 Score = 34.7 bits (78), Expect = 4.3, Method: Composition-based stats. Identities = 13/71 (18%), Positives = 19/71 (26%), Gaps = 6/71 (8%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK----CIYC--GLCQEA 112 + C+ C+ CE C R + C +C C Sbjct: 8 NTKDCMGCRACEIACVISHNQGVYPESKEHFKPRIRVFHQAERHTAVTCRHCEDAPCASV 67 Query: 113 CPVDAIVEGPN 123 CP A+V Sbjct: 68 CPTQALVRKNE 78 >gi|269837679|ref|YP_003319907.1| molybdopterin oxidoreductase [Sphaerobacter thermophilus DSM 20745] gi|269786942|gb|ACZ39085.1| molybdopterin oxidoreductase [Sphaerobacter thermophilus DSM 20745] Length = 798 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 9/87 (10%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-----AQAITIESGPRCHDGTR 91 P+ + + + H +RCI C C +C + G G Sbjct: 131 PYRRPKLAKPY--THLSDVIDYKWDRCIMCARCTRVCDEVIGVTAIGVLNRGLEAEIGPA 188 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAI 118 D+ C CG+C CPV A+ Sbjct: 189 YGT--DLREGTCTSCGMCIAVCPVGAL 213 >gi|206900688|ref|YP_002250628.1| ferredoxin 2 [Dictyoglomus thermophilum H-6-12] gi|206739791|gb|ACI18849.1| ferredoxin 2 [Dictyoglomus thermophilum H-6-12] Length = 443 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 11/66 (16%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +RC C C CP +A+ + +G I +CI CG C Sbjct: 5 YIHSVAINLQRCRGCIHCIRHCPTEAMRVRNGKSL-----------IIPYRCIDCGECIR 53 Query: 112 ACPVDA 117 CP A Sbjct: 54 VCPYHA 59 >gi|281357444|ref|ZP_06243932.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548] gi|281316047|gb|EFB00073.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548] Length = 573 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 14/68 (20%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 +AL + +C+ C+LC CP AI+ + + +D KC C C Sbjct: 512 NALVDLKLDQSKCVKCRLCIKNCPVGAISDD--------------FVVDNTKCTRCNTCV 557 Query: 111 EACPVDAI 118 + CP AI Sbjct: 558 DICPKKAI 565 >gi|66354366|gb|AAY44826.1| suppressor-of-rudimentary dihydropyrimidine dehydrogenase mutant [Drosophila melanogaster] Length = 1031 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 18/65 (27%), Gaps = 8/65 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP-VDA 117 ++ CI C C C + C C LC CP +D Sbjct: 949 DDDMCINCGKCYMTCA-------DSGYQAIEFDKDTHIPHVNDDCTGCTLCVSVCPIIDC 1001 Query: 118 IVEGP 122 I P Sbjct: 1002 ITMVP 1006 >gi|57234516|ref|YP_181463.1| pyruvic-ferredoxin oxidoreductase, delta subunit [Dehalococcoides ethenogenes 195] gi|57224964|gb|AAW40021.1| pyruvic-ferredoxin oxidoreductase, delta subunit [Dehalococcoides ethenogenes 195] Length = 86 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 33/87 (37%), Gaps = 10/87 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E G+ S G+ + + ++CI C LC CP I ++ Sbjct: 9 EPGNASQYKTGDWRSQLPVHNFKKCIKCGLCYVFCPEACINETKEG----------FFEA 58 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFE 125 D+ C CG+C CP AIV E Sbjct: 59 DLFYCKGCGICAHECPTGAIVMKDEEE 85 >gi|332159393|ref|YP_004424672.1| indolepyruvate ferredoxin oxidoreductase alpha subunit [Pyrococcus sp. NA2] gi|331034856|gb|AEC52668.1| indolepyruvate ferredoxin oxidoreductase alpha subunit [Pyrococcus sp. NA2] Length = 613 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 29/79 (36%), Gaps = 9/79 (11%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 P R E++C CK C + A+ + R + ID + C Sbjct: 542 PVIRRGETREPPIIIEDKCTGCKACILLSGCPALIYDPETR---------KVKIDELICT 592 Query: 105 YCGLCQEACPVDAIVEGPN 123 CG+C + CP DAI Sbjct: 593 GCGICNQLCPFDAIKFKEE 611 >gi|317487063|ref|ZP_07945871.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316921745|gb|EFV43023.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 543 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 33/91 (36%), Gaps = 15/91 (16%) Query: 43 TSPRFRGEHALRRYPN-GEERCIACKLCEAICPAQAI---------TIESGPRCHDGTRR 92 + + G + LR + ERC C C A C A+ T+ + Sbjct: 4 VTTQDIGVNDLRWIIDYRPERCTMCGSCVASCTLNALEVAVMRQDLTVSRASQPEPVREH 63 Query: 93 TVRYDIDM-----IKCIYCGLCQEACPVDAI 118 R I C+ CG+C++ CP AI Sbjct: 64 LARPVIRQKASLTGSCVGCGMCEKVCPNQAI 94 >gi|308273571|emb|CBX30173.1| hypothetical protein N47_D29820 [uncultured Desulfobacterium sp.] Length = 280 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 21/63 (33%), Gaps = 11/63 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E +C C C IC +AI + C CG C + CP AI Sbjct: 63 DEAKCTFCGKCAEICQFKAIMVLGE-----------VILTFPEMCHSCGGCMKVCPAGAI 111 Query: 119 VEG 121 E Sbjct: 112 KET 114 >gi|218133625|ref|ZP_03462429.1| hypothetical protein BACPEC_01494 [Bacteroides pectinophilus ATCC 43243] gi|217991000|gb|EEC57006.1| hypothetical protein BACPEC_01494 [Bacteroides pectinophilus ATCC 43243] Length = 1174 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 28/101 (27%), Gaps = 17/101 (16%) Query: 28 FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ----------- 76 FK +P +G+ + RG E CI C C +CP Sbjct: 660 FKNVIDGTFP--QGTAAYEKRGVAVDVP-CWNSESCIQCNQCAYVCPHAVIRPVVMNEEE 716 Query: 77 ---AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 A + ++ C CG C CP Sbjct: 717 KNAAPAGMKVHAMTGMPGYYFAMTVSVLDCTGCGSCTNVCP 757 >gi|160938172|ref|ZP_02085527.1| hypothetical protein CLOBOL_03065 [Clostridium bolteae ATCC BAA-613] gi|158438545|gb|EDP16302.1| hypothetical protein CLOBOL_03065 [Clostridium bolteae ATCC BAA-613] Length = 254 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 27/72 (37%), Gaps = 12/72 (16%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 +R + P CI+C LC A CP QAI + + +CI Sbjct: 166 PYRDWKQMPVIPLTNASCISCGLCAARCPVQAIPVSNPSSTDQ------------ARCIL 213 Query: 106 CGLCQEACPVDA 117 C C CPV A Sbjct: 214 CMRCISVCPVKA 225 Score = 38.2 bits (87), Expect = 0.37, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 17/41 (41%) Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 G R + ++ + CI CGLC CPV AI Sbjct: 162 PGNRPYRDWKQMPVIPLTNASCISCGLCAARCPVQAIPVSN 202 >gi|152979394|ref|YP_001345023.1| electron transport complex protein RnfB [Actinobacillus succinogenes 130Z] gi|150841117|gb|ABR75088.1| electron transport complex, RnfABCDGE type, B subunit [Actinobacillus succinogenes 130Z] Length = 189 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 10/70 (14%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 ++ E+ CI C C CP AI + + + C C LC Sbjct: 99 PEIKVAFIHEDMCIGCTKCVQACPVDAIIGTNK----------TLHTVIPELCTGCELCV 148 Query: 111 EACPVDAIVE 120 CP D I Sbjct: 149 APCPTDCITM 158 Score = 37.4 bits (85), Expect = 0.66, Method: Composition-based stats. Identities = 12/25 (48%), Positives = 14/25 (56%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 I CI C C +ACPVDAI+ Sbjct: 106 IHEDMCIGCTKCVQACPVDAIIGTN 130 >gi|85857982|ref|YP_460184.1| iron-sulfur protein associated with hydrogenases [Syntrophus aciditrophicus SB] gi|85721073|gb|ABC76016.1| iron-sulfur protein associated with hydrogenases [Syntrophus aciditrophicus SB] Length = 280 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 23/59 (38%), Gaps = 10/59 (16%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 Y +C AC C CP AI G + ID KCI CG C E CP Sbjct: 198 YYIDPGKCQACMTCARKCPVDAIISAKGQ----------VHVIDQDKCIKCGTCFEVCP 246 >gi|110634782|ref|YP_674990.1| 4Fe-4S ferredoxin, iron-sulfur binding [Mesorhizobium sp. BNC1] gi|110285766|gb|ABG63825.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Chelativorans sp. BNC1] Length = 680 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 22/72 (30%), Gaps = 9/72 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C C C + CP A++ C+ CGLC CP I Sbjct: 520 DVEGCTLCLSCVSACPTGALSDSEDRPALY---------FSESACVQCGLCAATCPEQVI 570 Query: 119 VEGPNFEFATET 130 P +F Sbjct: 571 TLVPQVDFQAWN 582 Score = 41.6 bits (96), Expect = 0.035, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 17/54 (31%), Gaps = 11/54 (20%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 C C +CP AIT ID C CG C CP A Sbjct: 285 TGCTRCLDLCPTGAITPAGN-----------HVAIDAEICAGCGNCAAVCPTGA 327 >gi|312135897|ref|YP_004003235.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Caldicellulosiruptor owensensis OL] gi|311775948|gb|ADQ05435.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Caldicellulosiruptor owensensis OL] Length = 373 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 10/57 (17%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 +C+ C +C C AIT+ + ID KC+ CG C C A Sbjct: 194 SKCVGCGMCVKSCAQLAITLNEKKKAV----------IDYEKCVGCGQCVAVCQFGA 240 Score = 33.9 bits (76), Expect = 6.8, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 4/60 (6%) Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVR----YDIDMIKCIYCGLCQEACPVDAIVE 120 K E AI G + + I + KC+ CG+C ++C AI Sbjct: 154 HFKGHEMTGFGGAIKNIGMGSGSRGGKLFMHSSSKPVIKVSKCVGCGMCVKSCAQLAITL 213 >gi|123142348|sp|Q0QLF7|HNR_EUBBA RecName: Full=6-hydroxynicotinate reductase gi|86278261|gb|ABC88393.1| 6-hydroxynicotinate reductase [Eubacterium barkeri] Length = 499 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 8/64 (12%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + EE+C C++C CP A+ E + KC+ CG+C+ C Sbjct: 1 MFKIDEEKCKKCRMCVKECPVHAVYYEKKDKGAIVE--------ITEKCVECGICKRVCK 52 Query: 115 VDAI 118 AI Sbjct: 53 FGAI 56 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 10/25 (40%), Positives = 14/25 (56%) Query: 95 RYDIDMIKCIYCGLCQEACPVDAIV 119 + ID KC C +C + CPV A+ Sbjct: 1 MFKIDEEKCKKCRMCVKECPVHAVY 25 >gi|15642824|ref|NP_227865.1| iron-sulfur cluster-binding protein [Thermotoga maritima MSB8] gi|148270010|ref|YP_001244470.1| hypothetical protein Tpet_0875 [Thermotoga petrophila RKU-1] gi|170288694|ref|YP_001738932.1| hypothetical protein TRQ2_0897 [Thermotoga sp. RQ2] gi|4980533|gb|AAD35142.1|AE001691_16 iron-sulfur cluster-binding protein [Thermotoga maritima MSB8] gi|147735554|gb|ABQ46894.1| protein of unknown function DUF362 [Thermotoga petrophila RKU-1] gi|170176197|gb|ACB09249.1| protein of unknown function DUF362 [Thermotoga sp. RQ2] Length = 261 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 25/71 (35%), Positives = 31/71 (43%), Gaps = 13/71 (18%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 ++ +C+ C+LCE CPA AI I S ID KCI C +C Sbjct: 199 RFFVKYPKIDTRKCVKCRLCEERCPASAIDISSQ-------------RIDYQKCIRCYVC 245 Query: 110 QEACPVDAIVE 120 E CP DAI Sbjct: 246 HEVCPQDAIKL 256 >gi|328953787|ref|YP_004371121.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] gi|328454111|gb|AEB09940.1| NADH dehydrogenase (quinone) [Desulfobacca acetoxidans DSM 11109] Length = 882 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 5/61 (8%) Query: 60 EERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 RC+ C C +C A I R G + + C +CG C E CPV A Sbjct: 144 NTRCVTCGRCVRVCRERVGASAINFENR---GYFTDLGSGQQPLNCEFCGTCIEVCPVGA 200 Query: 118 I 118 + Sbjct: 201 L 201 Score = 35.5 bits (80), Expect = 2.3, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 21/77 (27%), Gaps = 8/77 (10%) Query: 45 PRFRGEHALRRYPNGEERCIAC---KLCEAICPAQA-----ITIESGPRCHDGTRRTVRY 96 R E N C C CE + E+ + + + Sbjct: 81 KSIRRELVKFMLVNHPLDCPWCDKGGECELQNLTHELGIAEVDYEAARKPINNDVESPLI 140 Query: 97 DIDMIKCIYCGLCQEAC 113 + +C+ CG C C Sbjct: 141 ERYNTRCVTCGRCVRVC 157 >gi|317483802|ref|ZP_07942742.1| ferredoxin oxidoreductase [Bilophila wadsworthia 3_1_6] gi|316924905|gb|EFV46051.1| ferredoxin oxidoreductase [Bilophila wadsworthia 3_1_6] Length = 1165 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 15/81 (18%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIE----------SGPRCHDGTRRTVRYD 97 RG + + E+C+ C C CP AI H R ++ Sbjct: 667 RGAAIMVPVWD-AEKCVQCNKCAFACPHAAIRPRLLSAEEAVAAPASIEHRPCRIQKGFE 725 Query: 98 IDMI----KCIYCGLCQEACP 114 M C CG+C CP Sbjct: 726 FHMAISVLDCTGCGVCVGQCP 746 >gi|315924269|ref|ZP_07920493.1| pyruvate-ferredoxin oxidoreductase [Pseudoramibacter alactolyticus ATCC 23263] gi|315622430|gb|EFV02387.1| pyruvate-ferredoxin oxidoreductase [Pseudoramibacter alactolyticus ATCC 23263] Length = 1175 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 31/93 (33%), Gaps = 18/93 (19%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTRRTV----------- 94 A+ +CI C C +CP AI T E G Sbjct: 684 IAVNVPRWDISKCIQCNQCSFVCPHAAIRPVLLTEEEKAAAPAGFETKKAMGKPLAGLEY 743 Query: 95 RYDIDMIKCIYCGLCQEAC--PVDAIVEGPNFE 125 R +D++ C CG C +AC A+ P E Sbjct: 744 RIQVDVMDCTGCGNCVDACIAKEKALSLVPIHE 776 >gi|170749599|ref|YP_001755859.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methylobacterium radiotolerans JCM 2831] gi|170656121|gb|ACB25176.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methylobacterium radiotolerans JCM 2831] Length = 675 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 38/115 (33%), Gaps = 14/115 (12%) Query: 16 FVGAFFLCLRYFFKAKTTI-NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP 74 F+G LR+ F+ + P ++ + C C C + CP Sbjct: 480 FLGNKREVLRHTFRGMHSAAPAPVDRVPLAAGAP----FGGLDFRVADCTLCLACVSACP 535 Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 A++ + + C+ CGLC CP D I P +FA Sbjct: 536 THALSDSAEQPLLG---------FEESLCVQCGLCAATCPEDVITLRPQVDFAAW 581 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 16/54 (29%), Gaps = 11/54 (20%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 C C +CP AI ID C CG C CP A Sbjct: 281 TGCTRCLDVCPTGAIAPAGD-----------TVRIDPYVCAGCGSCAALCPTGA 323 >gi|154484478|ref|ZP_02026926.1| hypothetical protein EUBVEN_02192 [Eubacterium ventriosum ATCC 27560] gi|149734326|gb|EDM50243.1| hypothetical protein EUBVEN_02192 [Eubacterium ventriosum ATCC 27560] Length = 101 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 10/62 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 EE+C C LC +CP AI + R ID C CG+C +ACP AI Sbjct: 46 DEEKCKQCLLCVPVCPDSAI----------PVKEYKRQTIDYDHCKGCGICVKACPFGAI 95 Query: 119 VE 120 Sbjct: 96 KM 97 >gi|42526180|ref|NP_971278.1| pyruvate ferredoxin/flavodoxin oxidoreductase family protein [Treponema denticola ATCC 35405] gi|41816292|gb|AAS11159.1| pyruvate ferredoxin/flavodoxin oxidoreductase family protein [Treponema denticola ATCC 35405] Length = 1186 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 27/136 (19%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP-----RCH 87 T +EK + + + CI C C +CP I +++ + Sbjct: 675 TATTQYEKRAIAEHIP--------IWKSDICIQCGQCVMVCPHACIRMKAYDSSLLAKAP 726 Query: 88 DGTRRT-----------VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 G + + C CGLC + CP + N E + Sbjct: 727 QGFKSCDYKGKEFEGAKFTIQVSSEDCTGCGLCVQQCPAKS---KENPEIKAINMENFVE 783 Query: 137 DKERLLNNGDRWESEI 152 +++ + N + + ++I Sbjct: 784 HRKQEVANWNFFFNDI 799 >gi|330835620|ref|YP_004410348.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Metallosphaera cuprina Ar-4] gi|329567759|gb|AEB95864.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Metallosphaera cuprina Ar-4] Length = 405 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 12/63 (19%) Query: 63 CIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C + CPA AIT + + I+ KCI CG CQ ACP +A+ Sbjct: 59 CNHCDNPVCLSSCPANAITKD----------KNGIVKINSEKCIGCGYCQWACPYEALHF 108 Query: 121 GPN 123 + Sbjct: 109 SKD 111 Score = 40.5 bits (93), Expect = 0.085, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 28/76 (36%), Gaps = 22/76 (28%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC------GL--CQ 110 E+CI C C+ CP +A+ D M KC C GL C Sbjct: 87 NSEKCIGCGYCQWACPYEALHFSK--------------DGTMSKCHLCFDRLGKGLPYCV 132 Query: 111 EACPVDAIVEGPNFEF 126 EACP A+ G E Sbjct: 133 EACPTGALTFGWLKEP 148 >gi|325473515|gb|EGC76708.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Treponema denticola F0402] Length = 1186 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 22/136 (16%), Positives = 44/136 (32%), Gaps = 27/136 (19%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP-----RCH 87 T +EK + + + CI C C +CP I +++ + Sbjct: 675 TATTQYEKRAIAEHIP--------IWKSDICIQCGQCVMVCPHACIRMKAYDSSLLAKAP 726 Query: 88 DGTRRT-----------VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 G + + C CGLC + CP + N E + Sbjct: 727 QGFKSCDYKGKEFEGAKFTIQVSSEDCTGCGLCVQQCPAKS---KENPEIKAINMENFVE 783 Query: 137 DKERLLNNGDRWESEI 152 +++ + N + + ++I Sbjct: 784 HRKQEVANWNFFFNDI 799 >gi|319940779|ref|ZP_08015118.1| hypothetical protein HMPREF9464_00337 [Sutterella wadsworthensis 3_1_45B] gi|319805661|gb|EFW02442.1| hypothetical protein HMPREF9464_00337 [Sutterella wadsworthensis 3_1_45B] Length = 214 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 1/57 (1%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RCI C C ++C A + RT + C +C C E CP AI Sbjct: 62 RCIRCDRCRSVCHTNA-VGIAHFETGFLAMRTPVMTFHLGHCDFCKKCAEVCPTGAI 117 Score = 34.3 bits (77), Expect = 5.1, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 1/59 (1%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C CK C +CP AI + G I + C C EACP DA+ Sbjct: 101 HCDFCKKCAEVCPTGAIEDFAPETVRIGIAVVTESCIALRTGA-CTKCYEACPYDAVTL 158 >gi|307719055|ref|YP_003874587.1| hypothetical protein STHERM_c13740 [Spirochaeta thermophila DSM 6192] gi|306532780|gb|ADN02314.1| hypothetical protein STHERM_c13740 [Spirochaeta thermophila DSM 6192] Length = 583 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 3/68 (4%) Query: 59 GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115 +C+ C C +C Q + DGTR DI + CI CG C CPV Sbjct: 144 DPSKCVKCGRCVNVCQGMQNVWALEFLGRGDGTRIAPAGDIALNDSPCIKCGQCSAHCPV 203 Query: 116 DAIVEGPN 123 AI E + Sbjct: 204 GAIYEKDD 211 >gi|284049169|ref|YP_003399508.1| Fe-S cluster domain protein [Acidaminococcus fermentans DSM 20731] gi|283953390|gb|ADB48193.1| Fe-S cluster domain protein [Acidaminococcus fermentans DSM 20731] Length = 433 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 24/71 (33%), Gaps = 11/71 (15%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 E L C C +C C QAI + +G I +CI CG Sbjct: 1 MSEAYLNSVRVNTRHCTGCLICVKDCLVQAIRVRNGKAV-----------ILSDRCIDCG 49 Query: 108 LCQEACPVDAI 118 C CP A+ Sbjct: 50 ECIRCCPTRAM 60 >gi|258649199|ref|ZP_05736668.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Prevotella tannerae ATCC 51259] gi|260850463|gb|EEX70332.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Prevotella tannerae ATCC 51259] Length = 1186 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 28/94 (29%), Gaps = 20/94 (21%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIE---------------SGPRCHDGTRR 92 RG A E CI C C +CP I Sbjct: 676 RGVAAFVPEWI-PENCIQCNKCAFVCPHATIRPFVMDENETVGFKGESLEIKAPATMKGM 734 Query: 93 TVRYDIDMIKCIYCGLCQEACP----VDAIVEGP 122 ++++ C+ CG C + CP A++ P Sbjct: 735 RFVQQVNVLDCLGCGNCADVCPGKKGEKALIMKP 768 >gi|218551404|ref|YP_002385196.1| ferredoxin [Escherichia fergusonii ATCC 35469] gi|218358946|emb|CAQ91606.1| putative ferredoxin [Escherichia fergusonii ATCC 35469] Length = 224 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 37/114 (32%), Gaps = 9/114 (7%) Query: 12 FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71 + +E + ++ R F+A + P AL +C C LC Sbjct: 55 YYQELMSHRYVSRRGLFRAFVSAARPVTTPILPVHSLPPGAL-PDAQFRVQCTQCDLCIN 113 Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CP + + I+ C CGLC AC +A+ F+ Sbjct: 114 ACPMGILNRHEDGYP--------QLVIEFASCDGCGLCIAACSTEALRPQARFD 159 >gi|254466887|ref|ZP_05080298.1| dihydroorotate dehydrogenase family protein [Rhodobacterales bacterium Y4I] gi|206687795|gb|EDZ48277.1| dihydroorotate dehydrogenase family protein [Rhodobacterales bacterium Y4I] Length = 434 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 8/76 (10%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI C C A C E + + +C+ Sbjct: 330 QYLDLNYVTKAKISQDDCIKCGRCYAAC-------EDTSHQAIAMSEDRVFTVKDDECVA 382 Query: 106 CGLCQEACPVD-AIVE 120 C LC CPV+ I Sbjct: 383 CNLCVNVCPVEGCITM 398 >gi|197248415|ref|YP_002147480.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197212118|gb|ACH49515.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Agona str. SL483] Length = 287 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 22/73 (30%), Gaps = 11/73 (15%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C C C CP I + I +C CG C CP A+ Sbjct: 190 PQECRMCGACWRSCPENVIQFDDN-----------TLTIAAARCTGCGGCAAVCPHQALR 238 Query: 120 EGPNFEFATETRQ 132 + E A+ Sbjct: 239 LRFDVEPASTRHS 251 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 11/50 (22%) Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C +CPAQA ++ G ID +CI CG C CPVDAI Sbjct: 29 CADVCPAQAFSLAQGQVS-----------IDTTRCIACGDCLFVCPVDAI 67 >gi|197124675|ref|YP_002136626.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Anaeromyxobacter sp. K] gi|196174524|gb|ACG75497.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Anaeromyxobacter sp. K] Length = 632 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 9/59 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 C C +C A CP A+ I+ + + + C CG C ACP A Sbjct: 561 DAALCGGCGMCVAACPFGAMVIDGAD---------GKARVLAVDCRGCGTCAAACPTGA 610 Score = 35.8 bits (81), Expect = 1.7, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 11/68 (16%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRY----------DIDMIKCI-YCGLCQEA 112 +AC C +C A + P R+ + +D C+ C C +A Sbjct: 243 VACLGCAEVCGAACPVEVADPSGGGPARKAIHLPYPGCLPHAAVVDRAACLPGCAACADA 302 Query: 113 CPVDAIVE 120 CP A+ Sbjct: 303 CPFGAVRL 310 Score = 34.3 bits (77), Expect = 5.3, Method: Composition-based stats. Identities = 9/22 (40%), Positives = 13/22 (59%) Query: 97 DIDMIKCIYCGLCQEACPVDAI 118 ++D C CG+C ACP A+ Sbjct: 559 EVDAALCGGCGMCVAACPFGAM 580 >gi|149927499|ref|ZP_01915753.1| cyclic nucleotide-binding domain (cNMP-BD) protein [Limnobacter sp. MED105] gi|149823772|gb|EDM82998.1| cyclic nucleotide-binding domain (cNMP-BD) protein [Limnobacter sp. MED105] Length = 820 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 23/80 (28%), Gaps = 13/80 (16%) Query: 43 TSPRFRGEHALRRYPNGEERCIACK--LCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100 R + + C C+ C CP AI + Sbjct: 674 IPRLDRDAGPTFQNIHLAHSCRHCEQPHCMKDCPPDAIRRNEKGEV-----------MIA 722 Query: 101 IKCIYCGLCQEACPVDAIVE 120 CI CG C + CP +AI Sbjct: 723 DTCIGCGNCAKNCPYNAIEL 742 Score = 37.0 bits (84), Expect = 0.82, Method: Composition-based stats. Identities = 17/81 (20%), Positives = 20/81 (24%), Gaps = 24/81 (29%) Query: 61 ERCIACKLCEAICPAQAITIESGPRC------------------HDGTRRTVRYDIDMIK 102 + CI C C CP AI + P + K Sbjct: 723 DTCIGCGNCAKNCPYNAIELRVKPPPRKTGLLSWLLFGSGGPLGERPVKYDANSIKKAYK 782 Query: 103 CIYCG------LCQEACPVDA 117 C C C ACP A Sbjct: 783 CDLCHGKDGGPACVRACPTGA 803 >gi|150021446|ref|YP_001306800.1| electron transport complex, RnfABCDGE type, C subunit [Thermosipho melanesiensis BI429] gi|149793967|gb|ABR31415.1| electron transport complex, RnfABCDGE type, C subunit [Thermosipho melanesiensis BI429] Length = 438 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 20/74 (27%), Gaps = 1/74 (1%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100 G + CI C C +CP R I + Sbjct: 342 TPLVKGNNGITTIIPKEQKSTFCIRCSYCVNVCPMGLQPYLLDL-LGKKKRYDEAAKIGL 400 Query: 101 IKCIYCGLCQEACP 114 + CI CG C CP Sbjct: 401 LDCIECGSCTYICP 414 >gi|124268894|ref|YP_001022898.1| NAD-dependent formate dehydrogenase subunit alpha [Methylibium petroleiphilum PM1] gi|124261669|gb|ABM96663.1| NAD-dependent formate dehydrogenase alpha subunit [Methylibium petroleiphilum PM1] Length = 977 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 29/94 (30%), Gaps = 11/94 (11%) Query: 38 FEKGSTSPRFRGEHALR--------RYPNGEERCIACKLCEAICPAQAITI---ESGPRC 86 + ++ G H L+ + +CI C C C T SG Sbjct: 139 EVRYGVGDQYGGAHHLKSAKDESNPYFTYDPSKCIVCNRCVRACEETQGTFALTISGRGF 198 Query: 87 HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 +C+ CG C +ACP + E Sbjct: 199 ESRVSAGQDQPFMESECVSCGACVQACPTATLQE 232 >gi|313905900|ref|ZP_07839256.1| nitrite and sulphite reductase 4Fe-4S region [Eubacterium cellulosolvens 6] gi|313469241|gb|EFR64587.1| nitrite and sulphite reductase 4Fe-4S region [Eubacterium cellulosolvens 6] Length = 288 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 11/57 (19%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 ++CI C LC +C A++I G +D KC CG C +CP DA Sbjct: 163 DKCINCGLCAKVCRENAVSITDGKV-----------TVDQDKCNNCGRCVFSCPTDA 208 Score = 35.1 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 17/45 (37%) Query: 78 ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 G + VR + KCI CGLC + C +A+ Sbjct: 140 NNCLKAEENDIGIKGGVRVNWLEDKCINCGLCAKVCRENAVSITD 184 >gi|310658522|ref|YP_003936243.1| iron-sulfur protein [Clostridium sticklandii DSM 519] gi|308825300|emb|CBH21338.1| putative iron-sulfur protein [Clostridium sticklandii] Length = 418 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 7/69 (10%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 N + CI+CK C ++CP I + ++ C+ CG+CQ C Sbjct: 281 NFIANQLDNCISCKKCVSVCPVGCFEI-------KVFNDKDKVVLNSELCLGCGVCQRVC 333 Query: 114 PVDAIVEGP 122 ++AI Sbjct: 334 SINAIEMSK 342 >gi|297620126|ref|YP_003708231.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanococcus voltae A3] gi|297379103|gb|ADI37258.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus voltae A3] Length = 166 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 11/74 (14%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 ++ E+C+ C C +CP AI + + KC++CG C Sbjct: 28 QYIKSYIDIDNEKCVFCNKCIEVCPVDAIDLNFPEN-----------TVITEKCVHCGTC 76 Query: 110 QEACPVDAIVEGPN 123 + CPV AI Sbjct: 77 IDVCPVKAISLTQI 90 Score = 41.6 bits (96), Expect = 0.035, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 10/69 (14%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 + ++CI C +C CP AI+IE I KC+ CG C Sbjct: 105 HEKHKLLNYDAKKCIMCNICLKNCPFDAISIEKNQNK----------MIFTEKCVLCGHC 154 Query: 110 QEACPVDAI 118 + CP +AI Sbjct: 155 GQICPANAI 163 Score = 40.1 bits (92), Expect = 0.10, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 8/71 (11%) Query: 61 ERCIACKLCEAICPAQAIT--------IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 E+C+ C C +CP +AI+ + + + + D KCI C +C + Sbjct: 68 EKCVHCGTCIDVCPVKAISLTQIKLKIKNNELKIKKSHEKHKLLNYDAKKCIMCNICLKN 127 Query: 113 CPVDAIVEGPN 123 CP DAI N Sbjct: 128 CPFDAISIEKN 138 >gi|284162362|ref|YP_003400985.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Archaeoglobus profundus DSM 5631] gi|284012359|gb|ADB58312.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Archaeoglobus profundus DSM 5631] Length = 420 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 23/68 (33%), Gaps = 7/68 (10%) Query: 60 EERCIACKLCEAICPAQ-------AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 E C AC CE +CP + + Y ID C CG C + Sbjct: 113 NENCTACGECEKVCPVERPNDFDFGMDKTKAIYLPHDMAFPPIYVIDPDVCNKCGECVKV 172 Query: 113 CPVDAIVE 120 C DAI Sbjct: 173 CKYDAINL 180 >gi|282162714|ref|YP_003355099.1| hypothetical protein MCP_0044 [Methanocella paludicola SANAE] gi|282155028|dbj|BAI60116.1| conserved hypothetical protein [Methanocella paludicola SANAE] Length = 268 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 24/69 (34%), Gaps = 12/69 (17%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + CI C CE C AI + G G C CG C + CP AIV Sbjct: 200 RDSCIGCGKCERACFLSAIKVVDGRAAIGG------------DCRGCGRCADVCPSKAIV 247 Query: 120 EGPNFEFAT 128 + A Sbjct: 248 VSVDDRMAE 256 >gi|261601243|gb|ACX90846.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Sulfolobus solfataricus 98/2] Length = 87 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 26/75 (34%), Gaps = 11/75 (14%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G + + +CI CK C CP I +G +D C CG+ Sbjct: 23 GAWRIVKPVVDYSKCIGCKACFMFCPESTIVPSNGKV-----------RVDYEYCKGCGV 71 Query: 109 CQEACPVDAIVEGPN 123 C CPV AI Sbjct: 72 CANVCPVKAISMVSE 86 >gi|239787506|emb|CAX83976.1| Electron transport complex protein [uncultured bacterium] Length = 490 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 23/68 (33%), Gaps = 2/68 (2%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 CI C C ICP + + I ++ C+ CG C CP I Sbjct: 367 SPCIRCGTCVTICPCG-LVPVEMASFIRKEKLEEAAKIGVMDCVSCGSCSYICPSH-IPL 424 Query: 121 GPNFEFAT 128 F +A Sbjct: 425 VHYFNYAK 432 Score = 35.5 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 16/41 (39%), Gaps = 10/41 (24%) Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLN 143 CI CG C CP + E A+ R KE+L Sbjct: 369 CIRCGTCVTICPCGLVPV----EMASFIR------KEKLEE 399 >gi|255100494|ref|ZP_05329471.1| putative iron-sulfur protein [Clostridium difficile QCD-63q42] Length = 424 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 7/69 (10%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E C+ C C CP AI+ ID +C+ CG+C C + Sbjct: 289 NINHENCVKCGKCITACPIDAISKVKEDGKEY-------IKIDEDRCLGCGVCVRNCHKN 341 Query: 117 AIVEGPNFE 125 +I+ E Sbjct: 342 SIMLLKRDE 350 >gi|218782788|ref|YP_002434106.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfatibacillum alkenivorans AK-01] gi|218764172|gb|ACL06638.1| MvH Hase/Heterodisulfide reductase, subunit A-like protein [Desulfatibacillum alkenivorans AK-01] Length = 1021 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 29/82 (35%), Gaps = 12/82 (14%) Query: 57 PNGEERCIACKLCEAIC-------PAQAITIESGPRCHDGTRRTVRYDIDMIKCIY---- 105 ++CIAC LC C + + G ++Y ID CIY Sbjct: 104 YVDMDKCIACGLCAEKCPRPVADEFNEGVNNRKAIYIKYGQSVPLKYAIDPNACIYLTRG 163 Query: 106 -CGLCQEACPVDAIVEGPNFEF 126 C C++ CP AI E Sbjct: 164 KCRACEKFCPTGAINFEDKAEI 185 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 2/55 (3%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 E C C LC +CP +AI ++ R ++ D C CG+C CP Sbjct: 940 EHCDGCALCVDVCPYRAIRLQESTGEDGRMHRMIQVD--PALCKGCGVCAATCPK 992 Score = 35.5 bits (80), Expect = 2.3, Method: Composition-based stats. Identities = 8/21 (38%), Positives = 9/21 (42%) Query: 101 IKCIYCGLCQEACPVDAIVEG 121 C C LC + CP AI Sbjct: 940 EHCDGCALCVDVCPYRAIRLQ 960 >gi|242278804|ref|YP_002990933.1| hydrogenase, Fe-only [Desulfovibrio salexigens DSM 2638] gi|242121698|gb|ACS79394.1| hydrogenase, Fe-only [Desulfovibrio salexigens DSM 2638] Length = 444 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 8/68 (11%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 R E +C C CE C + AI + + +D + C+ CG C C Sbjct: 47 RFVRVDESKCEGCGACEEYCASGAIQSINDE--------GIHRIVDPVACMNCGQCLTNC 98 Query: 114 PVDAIVEG 121 P AI EG Sbjct: 99 PYGAIYEG 106 >gi|161338490|emb|CAO03077.1| 1-methyl alkyl succinate synthase activase [Azoarcus sp. HxN1] Length = 325 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 1/59 (1%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C+ C C ICP A + P + Y ID KC C C ACP A+ Sbjct: 57 CMQCGTCARICPRGAA-NKPVPVEAAQAEGSTYYKIDHDKCDACMECVSACPYSAMEIT 114 >gi|20807184|ref|NP_622355.1| ferredoxin 2 [Thermoanaerobacter tengcongensis MB4] gi|20515685|gb|AAM23959.1| Ferredoxin 2 [Thermoanaerobacter tengcongensis MB4] Length = 581 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 30/88 (34%), Gaps = 17/88 (19%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G L + C C C CP +AI + G ++ CIYCG Sbjct: 3 GGLILDVISVSKANCRNCYRCVRHCPVKAIKVVGGQA-----------EVVDSLCIYCGR 51 Query: 109 CQEACPVDA------IVEGPNFEFATET 130 C CP +A + F +A E Sbjct: 52 CVIECPQNAKKVRNDLHAVKEFIYAGEK 79 >gi|325294342|ref|YP_004280856.1| hydrogenase, Fe-only [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064790|gb|ADY72797.1| hydrogenase, Fe-only [Desulfurobacterium thermolithotrophum DSM 11699] Length = 450 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 29/83 (34%), Gaps = 11/83 (13%) Query: 47 FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 +R +++C+ C C+ CPA A G DI +CI C Sbjct: 28 YRPGELKGIVRINQDKCVGCDTCKGHCPADA--------IKGGLGVAHSVDIM--RCINC 77 Query: 107 GLCQEACPVDAI-VEGPNFEFAT 128 G C CP AI E A Sbjct: 78 GQCLVNCPFGAIEQMSFVDEVAK 100 >gi|322417571|ref|YP_004196794.1| FAD dependent oxidoreductase [Geobacter sp. M18] gi|322420729|ref|YP_004199952.1| FAD dependent oxidoreductase [Geobacter sp. M18] gi|320123958|gb|ADW11518.1| FAD dependent oxidoreductase [Geobacter sp. M18] gi|320127116|gb|ADW14676.1| FAD dependent oxidoreductase [Geobacter sp. M18] Length = 665 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 1/62 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ C+ C C+ +C AI E R G ++ C CG CQ CP +I Sbjct: 590 NEKYCVGCFACKKVCAYGAIE-EKEIRDRQGNLVKKVAYVNPGVCGGCGTCQATCPSKSI 648 Query: 119 VE 120 Sbjct: 649 EL 650 >gi|269468926|gb|EEZ80510.1| electron transport complex protein RnfB [uncultured SUP05 cluster bacterium] Length = 147 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 23/61 (37%), Gaps = 10/61 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ CI C LC CP A S V + +C C LC CPVD I Sbjct: 76 DEQICIGCTLCIQACPVDAFVGASK----------VMTTVIADECTGCDLCIPVCPVDCI 125 Query: 119 V 119 Sbjct: 126 H 126 >gi|255100556|ref|ZP_05329533.1| putative iron-sulfur protein [Clostridium difficile QCD-63q42] Length = 382 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 11/67 (16%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + CI C C+ CPA I I + ID+ KCI C C E CP AI Sbjct: 323 FQDCIKCGKCKEACPASTIEIGTKGAI-----------IDLSKCIRCYCCHELCPKKAID 371 Query: 120 EGPNFEF 126 NF F Sbjct: 372 VKRNFVF 378 >gi|225572996|ref|ZP_03781751.1| hypothetical protein RUMHYD_01187 [Blautia hydrogenotrophica DSM 10507] gi|225039647|gb|EEG49893.1| hypothetical protein RUMHYD_01187 [Blautia hydrogenotrophica DSM 10507] Length = 653 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 1/79 (1%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 + P G A+ CI C C +CP + + + + + Sbjct: 555 DLPNVNVPIMKGSNGIIAIETDHTETLECIKCGRCVDVCPMELSPLYFAKYADEQNWQGM 614 Query: 95 RYDIDMIKCIYCGLCQEAC 113 + D +++ CI C C+ C Sbjct: 615 K-DKNVMDCIECRCCEYIC 632 >gi|74317665|ref|YP_315405.1| heterodisulfide reductase subunit A [Thiobacillus denitrificans ATCC 25259] gi|74057160|gb|AAZ97600.1| heterodisulfide reductase, subunit A [Thiobacillus denitrificans ATCC 25259] Length = 752 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 22/70 (31%), Gaps = 10/70 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L E C CK C CP AI + + +C CG C A Sbjct: 536 LSFPKVRLEGCTQCKRCTVECPFGAIDEDEKRFPVF----------NESRCRRCGTCMGA 585 Query: 113 CPVDAIVEGP 122 CPV I Sbjct: 586 CPVRVISFEN 595 >gi|50084303|ref|YP_045813.1| putative iron-sulfur protein [Acinetobacter sp. ADP1] gi|49530279|emb|CAG67991.1| conserved hypothetical protein; putative iron-sulfur protein [Acinetobacter sp. ADP1] Length = 250 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 30/88 (34%), Gaps = 10/88 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E+ + G + E+ CI C C + CP AI + + + Sbjct: 54 EQSIWPIQSDGRPQRMKAIIREDECIGCTKCISACPVDAIIGSGK----------LMHTV 103 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEF 126 C C LC CPVD I + E Sbjct: 104 LTDLCTGCELCIPPCPVDCIDLVEDREP 131 >gi|327401152|ref|YP_004341991.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein [Archaeoglobus veneficus SNP6] gi|327316660|gb|AEA47276.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Archaeoglobus veneficus SNP6] Length = 372 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 4/59 (6%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+C C C ICP AI+ + Y ID KCI C C E C AI Sbjct: 199 NEKCDGCGRCTEICPINAISCHVAGDTGN----RTIYTIDRNKCIGCTGCYEVCRKRAI 253 Score = 34.3 bits (77), Expect = 5.0, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 35/104 (33%), Gaps = 13/104 (12%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTR-RTVRYDIDM-------IKCIYCGLCQEACPV 115 + C + QA S G + ++DI KC CG C E CP+ Sbjct: 156 VVCATHFKL-HMQAGIGGSIKNVGVGCVAKPSKFDIHCPEKPVINEKCDGCGRCTEICPI 214 Query: 116 DAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 +AI A +T Y +R G E+ R D Sbjct: 215 NAISCH----VAGDTGNRTIYTIDRNKCIGCTGCYEVCRKRAID 254 >gi|312126778|ref|YP_003991652.1| 4fe-4S ferredoxin iron-sulfur binding domain-containing protein [Caldicellulosiruptor hydrothermalis 108] gi|311776797|gb|ADQ06283.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Caldicellulosiruptor hydrothermalis 108] Length = 373 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 10/57 (17%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 +C+ C +C C AIT+ + ID KC+ CG C C A Sbjct: 194 SKCVGCGMCVKSCAQLAITLNEKKKAV----------IDYEKCVGCGQCVAVCQFGA 240 Score = 34.3 bits (77), Expect = 5.7, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 4/60 (6%) Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVR----YDIDMIKCIYCGLCQEACPVDAIVE 120 K E AI G + + I KC+ CG+C ++C AI Sbjct: 154 HFKGHEMTGFGGAIKNIGMGSGSRGGKLFMHSSSKPVIKTSKCVGCGMCVKSCAQLAITL 213 >gi|302387715|ref|YP_003823537.1| Fe-S cluster domain protein [Clostridium saccharolyticum WM1] gi|302198343|gb|ADL05914.1| Fe-S cluster domain protein [Clostridium saccharolyticum WM1] Length = 470 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 27/77 (35%), Gaps = 18/77 (23%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 EE C+ C C CP QAI + +G I+ CI CG C CP A Sbjct: 11 DEELCMGCINCIKRCPTQAIRVRNGKA-----------QINSKFCIDCGECIRVCPHHAK 59 Query: 119 VEG-------PNFEFAT 128 +E+ Sbjct: 60 HATYDKLEVLKQYEYTV 76 >gi|297543667|ref|YP_003675969.1| RnfABCDGE type electron transport complex subunit B [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841442|gb|ADH59958.1| electron transport complex, RnfABCDGE type, B subunit [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 271 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 21/90 (23%), Positives = 31/90 (34%), Gaps = 11/90 (12%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 P+ + + CI C++C CP +AIT E+ Sbjct: 182 KGIIELVPYNQEVIIKCKSNDPGKVVRGYCSVGCIGCQICVRSCPEKAITFENYLA---- 237 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 I+ KC CG+C E CP +I Sbjct: 238 -------KINYEKCTNCGICAEKCPTGSIF 260 Score = 40.9 bits (94), Expect = 0.062, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 11/66 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + C+ C C +C AI I +G ID KC+ C C E CP Sbjct: 135 KSCPYGCLGCGTCVDVCDYGAIQIINGVAV-----------IDKEKCVACKACIEVCPKG 183 Query: 117 AIVEGP 122 I P Sbjct: 184 IIELVP 189 Score = 37.4 bits (85), Expect = 0.71, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 5/69 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCIYCGLCQEAC 113 +E+C+ACK C +CP I + + + V + CI C +C +C Sbjct: 166 DKEKCVACKACIEVCPKGIIELVPYNQEVIIKCKSNDPGKVVRGYCSVGCIGCQICVRSC 225 Query: 114 PVDAIVEGP 122 P AI Sbjct: 226 PEKAITFEN 234 >gi|224543046|ref|ZP_03683585.1| hypothetical protein CATMIT_02246 [Catenibacterium mitsuokai DSM 15897] gi|224524071|gb|EEF93176.1| hypothetical protein CATMIT_02246 [Catenibacterium mitsuokai DSM 15897] Length = 1177 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 29/97 (29%), Gaps = 22/97 (22%) Query: 51 HALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT--- 93 A++ ++ CI C C +CP A + + Sbjct: 676 IAIQVPKWEKDNCIQCNQCAMVCPHATIRPFLMTEEEIKNAPEDITNDVLKPIGKGVEGL 735 Query: 94 -VRYDIDMIKCIYCGLCQEACP----VDAIVEGPNFE 125 R + C+ CGLC CP A+ P E Sbjct: 736 SFRIQVSPDNCVGCGLCAAICPGKRGEKALTMVPVKE 772 >gi|254176717|ref|ZP_04883374.1| formate dehydrogenase, alpha subunit [Burkholderia mallei ATCC 10399] gi|160697758|gb|EDP87728.1| formate dehydrogenase, alpha subunit [Burkholderia mallei ATCC 10399] Length = 984 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 25/85 (29%), Gaps = 10/85 (11%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T + + +C+ CG C Sbjct: 187 YFSYDPSKCIVCNRCVRACEETQGTFALTIASRGFESWVAASAGEAFMDSECVSCGACVA 246 Query: 112 ACPVDAIVE-------GPNFEFATE 129 ACP ++E P E T Sbjct: 247 ACPTATLIEKSVARLGQPEHEIVTT 271 >gi|153003113|ref|YP_001377438.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [Anaeromyxobacter sp. Fw109-5] gi|152026686|gb|ABS24454.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Anaeromyxobacter sp. Fw109-5] Length = 1203 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 26/100 (26%), Gaps = 19/100 (19%) Query: 31 KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---------- 80 +P TS + AL CI C C ICP AI Sbjct: 668 PVDGTWP---TGTSKWEKRSIALELPVWEPSLCIQCNKCALICPHAAIRPKFFAPEALAA 724 Query: 81 ------ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + D + C C LC E CP Sbjct: 725 APQGFVTMDFKSPDVKGNKYALQVSPDDCTGCTLCVEICP 764 >gi|118445132|ref|YP_879222.1| ferredoxin [Clostridium novyi NT] gi|253680812|ref|ZP_04861615.1| ferredoxin [Clostridium botulinum D str. 1873] gi|331270643|ref|YP_004397135.1| 4Fe-4S ferredoxin, iron-sulfur binding domain-containing protein [Clostridium botulinum BKT015925] gi|118135588|gb|ABK62632.1| ferredoxin [Clostridium novyi NT] gi|253562661|gb|EES92107.1| ferredoxin [Clostridium botulinum D str. 1873] gi|329127193|gb|AEB77138.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Clostridium botulinum BKT015925] Length = 57 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 11/58 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C++C C + CP AI+ +++ID CI CG C CPV AI Sbjct: 7 DSCVSCGSCASECPVGAISQGD-----------SQFEIDANSCIDCGNCANVCPVGAI 53 >gi|15920514|ref|NP_376183.1| putative ATPase RIL [Sulfolobus tokodaii str. 7] gi|15621297|dbj|BAB65292.1| 603aa long hypothetical RNase L inhibitor [Sulfolobus tokodaii str. 7] Length = 603 Score = 44.7 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 21/75 (28%), Gaps = 5/75 (6%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 + ++C C CP + I CI CG Sbjct: 1 MRVAVINYDFCKPDKCNL--ECITFCPIN---RSGSKAIELSDLVKGKPIIYEETCIGCG 55 Query: 108 LCQEACPVDAIVEGP 122 +C + CP +AI Sbjct: 56 ICIKKCPFEAIDIVN 70 >gi|319794270|ref|YP_004155910.1| 4fe-4S ferredoxin iron-sulfur binding domain protein [Variovorax paradoxus EPS] gi|315596733|gb|ADU37799.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Variovorax paradoxus EPS] Length = 692 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 9/58 (15%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 + C C +C A AI + ++ R ++ C+ CG C CP A+ Sbjct: 308 VGCNACVEVCSAHAIASD---------KQRQRIVVNPNLCVGCGACTTVCPTGALGYT 356 Score = 42.4 bits (98), Expect = 0.023, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 44/121 (36%), Gaps = 10/121 (8%) Query: 20 FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT 79 + L + A + P + G L +E+C C C + CP+ A+ Sbjct: 521 LEMALDHLMGAAPALQAPADAPLAFGLPPGSP-LGAIAVDKEKCTLCLACVSACPSGALL 579 Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139 + C+ CGLC+ CP DA+ P + E +Q++ ++ Sbjct: 580 DSQTAPQLRFIEKN---------CVQCGLCEITCPEDAVSLVPRLLASPERKQQVLLNEA 630 Query: 140 R 140 + Sbjct: 631 K 631 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 13/37 (35%), Positives = 15/37 (40%) Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 R T ID+ C C C ACP AI + A Sbjct: 173 RWTRDNAIDLDLCTRCNACIAACPEQAIGLDYQIDNA 209 >gi|312961803|ref|ZP_07776301.1| dihydroorotate dehydrogenase 1 [Pseudomonas fluorescens WH6] gi|311284062|gb|EFQ62645.1| dihydroorotate dehydrogenase 1 [Pseudomonas fluorescens WH6] Length = 424 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 4/65 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117 +E CI C C C + + + DGT Y++ +C+ C LCQ CPV D Sbjct: 341 DQEACIGCGRCHIACEDTSHQAIASLKQADGTHA---YEVIDDECVGCNLCQITCPVADC 397 Query: 118 IVEGP 122 I P Sbjct: 398 IEMVP 402 >gi|284047498|ref|YP_003397837.1| electron transport complex, RnfABCDGE type, C subunit [Acidaminococcus fermentans DSM 20731] gi|283951719|gb|ADB46522.1| electron transport complex, RnfABCDGE type, C subunit [Acidaminococcus fermentans DSM 20731] Length = 455 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 21/96 (21%), Positives = 30/96 (31%), Gaps = 6/96 (6%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93 ++YP KGS+ + + C+ C C CP + + + Sbjct: 344 LDYPITKGSSGLLIFNSKSPFAQYVEPDPCVHCARCVDACPMK-LEPTEIVQAVKKQNWD 402 Query: 94 VRYDIDMIKCIYCGLCQEACP-----VDAIVEGPNF 124 CI CG C CP V I G F Sbjct: 403 DAERFFCHACIECGSCAFVCPAHIPLVQYIRMGKQF 438 >gi|270296900|ref|ZP_06203099.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270272887|gb|EFA18750.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 300 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 27/81 (33%), Gaps = 8/81 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------DMIKCIYCGLCQ 110 EE+C AC C CP I I + + CI CG C Sbjct: 169 DEEKCTACGACAKACPKSIIEIRPQGKKSRRIYVQCVNKDKGAVARKACTVACIGCGKCV 228 Query: 111 EACPVDAIVEGPNFEFATETR 131 + CP +AI N + + Sbjct: 229 KVCPFEAITLENNLAYIDPNK 249 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 9/65 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C C A C AI + ++D KC CG C +ACP I Sbjct: 138 CSYGCLGCGDCVAACQFDAIHMNPETGLP---------EVDEEKCTACGACAKACPKSII 188 Query: 119 VEGPN 123 P Sbjct: 189 EIRPQ 193 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 11/60 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C C +CP +AIT+E+ ID KC C C+EACP + I Sbjct: 217 CTVACIGCGKCVKVCPFEAITLENNLAY-----------IDPNKCKSCRKCEEACPQNTI 265 >gi|256828436|ref|YP_003157164.1| nitroreductase [Desulfomicrobium baculatum DSM 4028] gi|256577612|gb|ACU88748.1| nitroreductase [Desulfomicrobium baculatum DSM 4028] Length = 279 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 8/66 (12%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + + E RCI C C A CP I ++ G R CI C C Sbjct: 1 MLDFIIDETRCIQCGECAADCPVSIIDMDGGLPRIPEHR--------ESYCIGCQHCLAV 52 Query: 113 CPVDAI 118 CP A+ Sbjct: 53 CPTAAL 58 Score = 37.0 bits (84), Expect = 0.81, Method: Composition-based stats. Identities = 13/37 (35%), Positives = 16/37 (43%) Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 + ID +CI CG C CPV I E R+ Sbjct: 4 FIIDETRCIQCGECAADCPVSIIDMDGGLPRIPEHRE 40 >gi|212634638|ref|YP_002311163.1| iron-sulfur cluster-binding protein [Shewanella piezotolerans WP3] gi|212556122|gb|ACJ28576.1| Iron-sulfur cluster-binding protein [Shewanella piezotolerans WP3] Length = 939 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 29/83 (34%), Gaps = 9/83 (10%) Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139 + + D + KC+ CG C++ CP A+ P AT R+ Sbjct: 519 NDDAKIHVKNIKPCPVVDDFVDKCLECGFCEKTCPTSALNLTPRQRIATL-RE-----IA 572 Query: 140 RLLNNGDRWESEIVRNIVTDSPY 162 RL GD N+ + Y Sbjct: 573 RLEQIGDHLA---ADNMRAAAKY 592 Score = 34.3 bits (77), Expect = 5.9, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 18/76 (23%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPR-----------------CHDGTRRTVRYDID 99 + ++C+ C CE CP A+ + R D R +YD+ Sbjct: 536 DDFVDKCLECGFCEKTCPTSALNLTPRQRIATLREIARLEQIGDHLAADNMRAAAKYDVI 595 Query: 100 MIKCIYCGLCQEACPV 115 C C LC ACPV Sbjct: 596 -DTCAACQLCTIACPV 610 >gi|160935009|ref|ZP_02082395.1| hypothetical protein CLOLEP_03885 [Clostridium leptum DSM 753] gi|156866462|gb|EDO59834.1| hypothetical protein CLOLEP_03885 [Clostridium leptum DSM 753] Length = 431 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 11/59 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 +++C+ C C CP +AI + G I +CI CG C CP A Sbjct: 4 DKDKCLGCTNCIKRCPTEAIRVREGKA-----------QIISERCIDCGECIRVCPHHA 51 >gi|150400534|ref|YP_001324300.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanococcus aeolicus Nankai-3] gi|150013237|gb|ABR55688.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus aeolicus Nankai-3] Length = 383 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 2/60 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + +C+ C +C CP AI + + + + KCI C C E CP I Sbjct: 157 DKNKCMYCSICAQTCPWNAIYVAGE--IPKKRHKEQIFTMAEDKCIGCMACAEICPGSMI 214 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 1/71 (1%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI-DMIKCIYCGLCQEA 112 +P + CI C++C +CP + I+I + + I + C+ CG+C Sbjct: 82 NIFPYSKGHCILCEMCVEVCPIEIISIPTIIDKPKKEIIIPKDPIAVVDACVGCGVCVPV 141 Query: 113 CPVDAIVEGPN 123 CPV+AI + Sbjct: 142 CPVEAINIEND 152 Score = 38.2 bits (87), Expect = 0.40, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 3/63 (4%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C CP A+ I + + + R + C CG C CP+ + Sbjct: 293 KMCIVCGACVTACPTGALKIGT---INHNGKEYNRIEYGPHLCDKCGKCVSTCPMKTLRL 349 Query: 121 GPN 123 + Sbjct: 350 TDD 352 Score = 35.5 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 13/78 (16%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C +C +CP +AI IE+ +D KC+YC +C + CP +AI Sbjct: 132 CVGCGVCVPVCPVEAINIENDRAV-----------VDKNKCMYCSICAQTCPWNAIYVAG 180 Query: 123 NFEFATETRQELYYDKER 140 E + +E + Sbjct: 181 --EIPKKRHKEQIFTMAE 196 Score = 35.1 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 11/69 (15%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 C C C +CP +A++ +G + C CG C ACP Sbjct: 31 FNSCNLCMQCVKVCPTKALSEVAGKIS-----------YNSSICKKCGACATACPTKIKK 79 Query: 120 EGPNFEFAT 128 F ++ Sbjct: 80 VDNIFPYSK 88 >gi|154248924|ref|YP_001409749.1| hydrogenase, Fe-only [Fervidobacterium nodosum Rt17-B1] gi|154152860|gb|ABS60092.1| hydrogenase, Fe-only [Fervidobacterium nodosum Rt17-B1] Length = 667 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 3/81 (3%) Query: 59 GEERCIACKLCEAIC---PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 +CI C C C A + + ++ +C++CG C CP Sbjct: 140 DNAKCILCGDCVRACDEIQTVAAIDFAYRGFEAQVVPSFEEKLENTECVFCGQCVAYCPT 199 Query: 116 DAIVEGPNFEFATETRQELYY 136 A+ + + + +E Y Sbjct: 200 GALAIRNDVDKVYKAIEEGKY 220 >gi|120609661|ref|YP_969339.1| dihydropyrimidine dehydrogenase [Acidovorax citrulli AAC00-1] gi|120588125|gb|ABM31565.1| dihydrouracil dehydrogenase (NAD+) / dihydropyrimidine dehydrogenase (NADP+) [Acidovorax citrulli AAC00-1] Length = 442 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 4/58 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 ++ CI C C +C + + R R +++D +C+ C LC CPV Sbjct: 342 NQDACIQCGRCHVVCEDTSHQAITFTREGGVRR----FEVDESECVGCNLCVSICPVP 395 >gi|84514681|ref|ZP_01002045.1| dihydropyrimidine dehydrogenase [Loktanella vestfoldensis SKA53] gi|84511732|gb|EAQ08185.1| dihydropyrimidine dehydrogenase [Loktanella vestfoldensis SKA53] Length = 434 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 23/63 (36%), Gaps = 8/63 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117 ++ CI C C A C E + + +C+ C LC + CPV + Sbjct: 343 NQDDCIKCGRCYAAC-------EDTSHQAIAMSADRTFTVIDAECVACNLCVDVCPVENC 395 Query: 118 IVE 120 I Sbjct: 396 ITM 398 >gi|319936764|ref|ZP_08011177.1| hypothetical protein HMPREF9488_02011 [Coprobacillus sp. 29_1] gi|319808321|gb|EFW04886.1| hypothetical protein HMPREF9488_02011 [Coprobacillus sp. 29_1] Length = 249 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 34/98 (34%), Gaps = 12/98 (12%) Query: 25 RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84 + F ++ T+ G + F + G + CI+C CE +CP I + G Sbjct: 152 KSFPESSITLKDKVSSGIVNDLFYPLFVQAKKFYGNDNCISCGKCEKLCPLSNIKLIEGQ 211 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 I C +C C CP AI G Sbjct: 212 P------------IWGNHCTHCMACISRCPKGAIEYGK 237 >gi|313673510|ref|YP_004051621.1| nad(p)-dependent nickel-iron dehydrogenase diaphorase component subunit hoxu [Calditerrivibrio nitroreducens DSM 19672] gi|312940266|gb|ADR19458.1| NAD(P)-dependent nickel-iron dehydrogenase diaphorase component subunit HoxU [Calditerrivibrio nitroreducens DSM 19672] Length = 231 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 38/105 (36%), Gaps = 4/105 (3%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC--PAQAITIESGPRCHDGTRRTVR 95 FE + P+ + + +Y RC+ C C +C A T + R H T Sbjct: 122 FEIKNQYPKCEVDLSHDKYGIDHNRCVLCARCVRVCAEIEGAHTKDISGRGHKARVITDF 181 Query: 96 YDID--MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 C CG C + CP A+ E A + R L Y K Sbjct: 182 AKGWGEAETCTGCGKCVQVCPTGALFEKGKPVGAKKKRDFLNYLK 226 >gi|257791993|ref|YP_003182599.1| formate dehydrogenase, alpha subunit [Eggerthella lenta DSM 2243] gi|257475890|gb|ACV56210.1| formate dehydrogenase, alpha subunit [Eggerthella lenta DSM 2243] Length = 903 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 28/90 (31%), Gaps = 5/90 (5%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93 + PFE R E+ Y CI C+ C C A G Sbjct: 123 LESPFEAAQKREPVRDENPFLAY--DPNLCIRCQRCVGACNDAARNHTLGTAKRGVRTLI 180 Query: 94 VRYDIDMIK---CIYCGLCQEACPVDAIVE 120 + C CG C +ACP A+ E Sbjct: 181 EAPFGADWRATDCESCGNCAQACPTGALTE 210 >gi|255526971|ref|ZP_05393864.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Clostridium carboxidivorans P7] gi|296185135|ref|ZP_06853545.1| 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family [Clostridium carboxidivorans P7] gi|255509330|gb|EET85677.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Clostridium carboxidivorans P7] gi|296049969|gb|EFG89393.1| 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family [Clostridium carboxidivorans P7] Length = 97 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 36/99 (36%), Gaps = 15/99 (15%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPN------GEERCIACKLCEAICPAQAITIESGPRCH 87 PF SP+ E + E+C+ C+ C CP ++ + + Sbjct: 6 EKIPFAGTVPSPQKENEGMITGNWRTRRPVLDAEKCVECQTCWISCPDSSVNLMTKDHPI 65 Query: 88 DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 + + C CG+C E CPV AI P +F Sbjct: 66 NFNLKY---------CKGCGICAEVCPVGAISLVPELDF 95 >gi|239820155|ref|YP_002947340.1| Glutamate synthase (NADPH) [Variovorax paradoxus S110] gi|239805008|gb|ACS22074.1| Glutamate synthase (NADPH) [Variovorax paradoxus S110] Length = 599 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 24/80 (30%), Gaps = 20/80 (25%) Query: 63 CIACKLCEAICPAQAITIESGPR--------------------CHDGTRRTVRYDIDMIK 102 CI C C ICP I+ + G + D Sbjct: 506 CIECDACVDICPMDCISFTTNGDEADLRQRLKAPALNLAQDLYVSGGLKTGRVMVKDEDV 565 Query: 103 CIYCGLCQEACPVDAIVEGP 122 C++CGLC E CP A Sbjct: 566 CLHCGLCAERCPTGAWDMQK 585 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 15/55 (27%), Gaps = 2/55 (3%) Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 E A T + CI C C + CP+D I N Sbjct: 474 VEVELGFDAATAFKEAERCLNCDVQTVFT--ESACIECDACVDICPMDCISFTTN 526 >gi|194890619|ref|XP_001977354.1| GG18994 [Drosophila erecta] gi|190649003|gb|EDV46281.1| GG18994 [Drosophila erecta] Length = 1033 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 18/65 (27%), Gaps = 8/65 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP-VDA 117 ++ CI C C C + C C LC CP +D Sbjct: 951 DDDMCINCGKCYMTCA-------DSGYQAIEFDKDTHIPHVNDDCTGCTLCVSVCPIIDC 1003 Query: 118 IVEGP 122 I P Sbjct: 1004 ITMVP 1008 >gi|182420185|ref|ZP_02951416.1| iron-sulfur cluster-binding protein [Clostridium butyricum 5521] gi|237667529|ref|ZP_04527513.1| iron-sulfur cluster-binding protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182375987|gb|EDT73577.1| iron-sulfur cluster-binding protein [Clostridium butyricum 5521] gi|237655877|gb|EEP53433.1| iron-sulfur cluster-binding protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 421 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 7/69 (10%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 +CI C C ICP +AI + + + +D C+ CG+C + CP D Sbjct: 288 YVDTHKCIGCGKCTNICPMEAIGVTTIGKDKYA-------KVDDKLCLGCGVCVKNCPKD 340 Query: 117 AIVEGPNFE 125 AI E Sbjct: 341 AIKLKRRKE 349 Score = 40.1 bits (92), Expect = 0.12, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 1/59 (1%) Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 C C+ C A + G T + Y +D KCI CG C CP++AI Sbjct: 257 MCNCCKCHCEAFTSAKKFGLLVPVNTTSYIPY-VDTHKCIGCGKCTNICPMEAIGVTTI 314 >gi|167549451|ref|ZP_02343210.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168466721|ref|ZP_02700575.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168821497|ref|ZP_02833497.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|195630838|gb|EDX49430.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|205325401|gb|EDZ13240.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205342030|gb|EDZ28794.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|320087023|emb|CBY96792.1| NADH-quinone oxidoreductase subunits H/I NADH dehydrogenase I subunits H/I; NDH-1 subunit H/I [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] Length = 287 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 22/73 (30%), Gaps = 11/73 (15%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C C C CP I + I +C CG C CP A+ Sbjct: 190 PQECRMCGACWRSCPENVIQFDDN-----------TLTIAAARCTGCGGCAAVCPHQALR 238 Query: 120 EGPNFEFATETRQ 132 + E A+ Sbjct: 239 LRFDVEPASTRHS 251 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 11/50 (22%) Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C +CPAQA ++ G ID +CI CG C CPVDAI Sbjct: 29 CADVCPAQAFSLAQGQVS-----------IDTTRCIACGDCLFVCPVDAI 67 >gi|87198759|ref|YP_496016.1| formate dehydrogenase, alpha subunit [Novosphingobium aromaticivorans DSM 12444] gi|87134440|gb|ABD25182.1| formate dehydrogenase alpha subunit [Novosphingobium aromaticivorans DSM 12444] Length = 952 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 28/81 (34%), Gaps = 4/81 (4%) Query: 55 RYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + +CI C C C A+TI+ + D +C+ CG C Sbjct: 159 YFDFDPSKCIVCSRCVRACDEVQGTFALTIDGRGFASKVSAGLGSDDYLSSECVSCGACV 218 Query: 111 EACPVDAIVEGPNFEFATETR 131 +ACP + E E R Sbjct: 219 QACPTATLQEKAVKEIGKPER 239 >gi|13541665|ref|NP_111353.1| 2-oxoisovalerate-ferredoxin oxidoreductase, subunit delta (vorD) [Thermoplasma volcanium GSS1] Length = 94 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 2/71 (2%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR--RTVRYDIDMIKCIYCGLC 109 +++ ++CI C +C CP AI I++G R + ID C CG+C Sbjct: 18 RIQKPTIQYDKCIRCMICWKYCPDNAIEIKTGDEKAPNERVAKMEFPAIDYKFCKGCGIC 77 Query: 110 QEACPVDAIVE 120 CP I Sbjct: 78 ANECPEKCIDM 88 >gi|33602759|ref|NP_890319.1| ferredoxin [Bordetella bronchiseptica RB50] gi|33577201|emb|CAE35758.1| putative ferredoxin [Bordetella bronchiseptica RB50] Length = 213 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 24/70 (34%), Gaps = 10/70 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L E CI C LC CP AI + + + C C LC Sbjct: 77 LLVAVIDEAHCIGCTLCIKACPVDAIVGANK----------RMHTVLADWCTGCDLCVAP 126 Query: 113 CPVDAIVEGP 122 CPVD I P Sbjct: 127 CPVDCIDMRP 136 >gi|332668414|ref|YP_004451202.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Haliscomenobacter hydrossis DSM 1100] gi|332337228|gb|AEE54329.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Haliscomenobacter hydrossis DSM 1100] Length = 1182 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 27/91 (29%), Gaps = 24/91 (26%) Query: 58 NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY--DIDMI 101 + CI C C +CP QA + RY + + Sbjct: 683 WEPDLCIQCGNCSFVCPHSVIRSKFYHEDHLQQAPEGFPSAPINARGFPETRYTLQVYVE 742 Query: 102 KCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 C C LC EACP + A R+ Sbjct: 743 DCTGCNLCVEACPA--------HDPADTERK 765 >gi|295092103|emb|CBK78210.1| hypothetical protein [Clostridium cf. saccharolyticum K10] Length = 252 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 34/99 (34%), Gaps = 12/99 (12%) Query: 27 FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC 86 F + ++ F G + F + CI+C C +CP I ++ G Sbjct: 153 FPEPAISLKDKFISGIVNSLFYTFFVRSKKFRVSSSCISCGRCAKLCPLGNIRMKEGRP- 211 Query: 87 HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 + C +C C CPV+AI G E Sbjct: 212 -----------VWGDDCTHCMACICRCPVNAIEYGSRTE 239 >gi|289449986|ref|YP_003475788.1| electron transport complex, RnfABCDGE type subunit B [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184533|gb|ADC90958.1| electron transport complex, RnfABCDGE type, B subunit [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 283 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 24/105 (22%), Positives = 33/105 (31%), Gaps = 11/105 (10%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + C+ + + EK +T + + CIAC C C Sbjct: 179 SDMCKGCKKCVSVCPQKIIKMFPREEKKATVYCNNQDKGPTARKACKTACIACGACVRSC 238 Query: 74 PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 P +AI I ID+ KC C C CP AI Sbjct: 239 PQKAIEIVDN-----------HAVIDITKCTGCMTCVNKCPTSAI 272 Score = 41.2 bits (95), Expect = 0.042, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 25/70 (35%), Gaps = 6/70 (8%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCH------DGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C CK C ++CP + I + + + CI CG C +CP Sbjct: 180 DMCKGCKKCVSVCPQKIIKMFPREEKKATVYCNNQDKGPTARKACKTACIACGACVRSCP 239 Query: 115 VDAIVEGPNF 124 AI N Sbjct: 240 QKAIEIVDNH 249 Score = 34.7 bits (78), Expect = 4.0, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 18/63 (28%), Gaps = 11/63 (17%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C A CP AI + I C C C CP I P Sbjct: 153 CLGLGDCAAACPFDAIRVIDNLAV-----------IRSDMCKGCKKCVSVCPQKIIKMFP 201 Query: 123 NFE 125 E Sbjct: 202 REE 204 >gi|322418624|ref|YP_004197847.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein [Geobacter sp. M18] gi|320125011|gb|ADW12571.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp. M18] Length = 408 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 27/85 (31%), Gaps = 16/85 (18%) Query: 29 KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88 + P+ + RG L PN + C+ C C CP Sbjct: 178 RKFCKTVCPYGRIQLMTMERGTLTLEFDPNLKGACLRCGACVRACPMG------------ 225 Query: 89 GTRRTVRYDIDMIKCIYCGLCQEAC 113 D I+CI CG C +AC Sbjct: 226 ----IDIRDGLQIECINCGRCLDAC 246 >gi|254519455|ref|ZP_05131511.1| pyruvate-flavodoxin oxidoreductase [Clostridium sp. 7_2_43FAA] gi|226913204|gb|EEH98405.1| pyruvate-flavodoxin oxidoreductase [Clostridium sp. 7_2_43FAA] Length = 1170 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 29/91 (31%), Gaps = 19/91 (20%) Query: 51 HALRRYPNGEERCIACKLCEAICPA--------------QAITIES-GPRCHDGTRRTVR 95 A+ +++CI C C +CP A P T Sbjct: 677 IAINVPEWQQDKCIQCNQCAYVCPHAVIRPFLLNENEKENAPESLKIVPAKALKTEEPTF 736 Query: 96 YDI--DMIKCIYCGLCQEACPVD--AIVEGP 122 Y I + C CG C + CP A++ P Sbjct: 737 YTIGVTPLDCTGCGNCAQVCPAPGKALIMKP 767 >gi|198275774|ref|ZP_03208305.1| hypothetical protein BACPLE_01949 [Bacteroides plebeius DSM 17135] gi|198271403|gb|EDY95673.1| hypothetical protein BACPLE_01949 [Bacteroides plebeius DSM 17135] Length = 445 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 33/89 (37%), Gaps = 3/89 (3%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 KA P KGS+ + RR + CI C C ++CP Sbjct: 333 MMGKALVNTEVPICKGSSGVLIMNDKEARRA--EPQPCIRCAKCVSVCPMGLEPYLLATC 390 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 G V +++ M CI CG CQ CP Sbjct: 391 SAHGDWERVEHEMIMS-CIECGSCQFTCP 418 >gi|126700799|ref|YP_001089696.1| putative dihydroorotate dehydrogenase, catalytic subunit [Clostridium difficile 630] gi|254976768|ref|ZP_05273240.1| putative dihydroorotate dehydrogenase, catalytic subunit [Clostridium difficile QCD-66c26] gi|255094153|ref|ZP_05323631.1| putative dihydroorotate dehydrogenase, catalytic subunit [Clostridium difficile CIP 107932] gi|255102322|ref|ZP_05331299.1| putative dihydroorotate dehydrogenase, catalytic subunit [Clostridium difficile QCD-63q42] gi|255308215|ref|ZP_05352386.1| putative dihydroorotate dehydrogenase, catalytic subunit [Clostridium difficile ATCC 43255] gi|255315904|ref|ZP_05357487.1| putative dihydroorotate dehydrogenase, catalytic subunit [Clostridium difficile QCD-76w55] gi|255518564|ref|ZP_05386240.1| putative dihydroorotate dehydrogenase, catalytic subunit [Clostridium difficile QCD-97b34] gi|255651684|ref|ZP_05398586.1| putative dihydroorotate dehydrogenase, catalytic subunit [Clostridium difficile QCD-37x79] gi|260684718|ref|YP_003216003.1| putative dihydroorotate dehydrogenase, catalytic subunit [Clostridium difficile CD196] gi|260688376|ref|YP_003219510.1| putative dihydroorotate dehydrogenase, catalytic subunit [Clostridium difficile R20291] gi|306521483|ref|ZP_07407830.1| putative dihydroorotate dehydrogenase, catalytic subunit [Clostridium difficile QCD-32g58] gi|115252236|emb|CAJ70076.1| Dihydroorotate dehydrogenase, catalytic subunit [Clostridium difficile] gi|260210881|emb|CBA66039.1| putative dihydroorotate dehydrogenase, catalytic subunit [Clostridium difficile CD196] gi|260214393|emb|CBE06800.1| putative dihydroorotate dehydrogenase, catalytic subunit [Clostridium difficile R20291] Length = 369 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 12/60 (20%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + +CI CK C C +A+ + ID KC CGLC CP A+ Sbjct: 310 DDNKCIKCKQCVTSCVYEALEVTDKLN------------IDADKCFGCGLCVTRCPKGAL 357 >gi|86158828|ref|YP_465613.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Anaeromyxobacter dehalogenans 2CP-C] gi|85775339|gb|ABC82176.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Anaeromyxobacter dehalogenans 2CP-C] Length = 648 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 4/68 (5%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP--NFEFA 127 E A + YD KC+ CG C + CP + P + + Sbjct: 533 EVETAFGAEEAIAQGARCLVCHVQTIYD--PEKCVLCGRCVDVCPEYCLALVPLEDVDLP 590 Query: 128 TETRQELY 135 E R+ L Sbjct: 591 DEDRRALV 598 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 26/87 (29%), Gaps = 14/87 (16%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIES--------------GPRCHDGTRRT 93 R + E+C+ C C +CP + + G Sbjct: 549 RCLVCHVQTIYDPEKCVLCGRCVDVCPEYCLALVPLEDVDLPDEDRRALVEAAAAGGLPL 608 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVE 120 D CI CGLC CP DA+ Sbjct: 609 SAMIKDDAPCIRCGLCAIRCPTDAMTM 635 >gi|83589813|ref|YP_429822.1| aldo/keto reductase [Moorella thermoacetica ATCC 39073] gi|83572727|gb|ABC19279.1| Aldo/keto reductase [Moorella thermoacetica ATCC 39073] Length = 337 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 11/58 (18%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C AIT+ +G I+ KC+ CG C E CP AI Sbjct: 290 CAGDGACLEACTNDAITMVNGKA-----------RINRAKCLLCGYCTEVCPQFAIRM 336 >gi|18313282|ref|NP_559949.1| putative ATPase RIL [Pyrobaculum aerophilum str. IM2] gi|18160804|gb|AAL64131.1| RNase L inhibitor homolog [Pyrobaculum aerophilum str. IM2] Length = 590 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 2/64 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C K C C +SG + + I CI CG+C CP +AI Sbjct: 8 DRDSCQP-KKCGHECVKYCPVNKSGKVV-WIDEQLKKAVISEALCIGCGICVHKCPFEAI 65 Query: 119 VEGP 122 Sbjct: 66 TIVN 69 >gi|16765847|ref|NP_461462.1| polyferredoxin [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|197262713|ref|ZP_03162787.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|16421071|gb|AAL21421.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|197240968|gb|EDY23588.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|261247723|emb|CBG25551.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267994646|gb|ACY89531.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301159076|emb|CBW18590.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312913514|dbj|BAJ37488.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321222772|gb|EFX47843.1| Putative polyferredoxin [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323130855|gb|ADX18285.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 287 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 23/76 (30%), Gaps = 11/76 (14%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C C C CP I + I +C CG C CP A+ Sbjct: 190 PQECRMCGACWRSCPENVIQFDDN-----------TLTIAAARCTGCGGCAAVCPHQALR 238 Query: 120 EGPNFEFATETRQELY 135 + E A+ Y Sbjct: 239 LRFDVEPASTRHSTAY 254 Score = 35.8 bits (81), Expect = 1.7, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 11/50 (22%) Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C +CPAQA ++ G ID +CI CG C CPVDAI Sbjct: 29 CADVCPAQAFSLAQGQVS-----------IDTTRCIACGDCLFVCPVDAI 67 >gi|37520504|ref|NP_923881.1| iron-sulfur cluster binding protein [Gloeobacter violaceus PCC 7421] gi|35211498|dbj|BAC88876.1| glr0935 [Gloeobacter violaceus PCC 7421] Length = 134 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 9/60 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C+ C LC +CP A+ + + R +CI C C CPV AI Sbjct: 80 DENLCVHCGLCTGVCPTGALALHAETFLLQFRR---------SRCIVCEQCVPVCPVAAI 130 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 10/24 (41%), Positives = 13/24 (54%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEG 121 ID C++CGLC CP A+ Sbjct: 79 IDENLCVHCGLCTGVCPTGALALH 102 >gi|220931146|ref|YP_002508054.1| NADH dehydrogenase I subunit G [Halothermothrix orenii H 168] gi|219992456|gb|ACL69059.1| NADH dehydrogenase I subunit G [Halothermothrix orenii H 168] Length = 570 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 24/74 (32%), Gaps = 3/74 (4%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPV 115 +CI C C C + + ++C CG C ACP Sbjct: 146 EPNKCITCGRCIRKCEEVQEVGIFTTANRGPATVVTTFKEKGMGNVECTNCGQCIHACPT 205 Query: 116 DAIVEGPNFEFATE 129 A+ E ++E E Sbjct: 206 GALHEVYHYEKVWE 219 >gi|312621527|ref|YP_004023140.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Caldicellulosiruptor kronotskyensis 2002] gi|312201994|gb|ADQ45321.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Caldicellulosiruptor kronotskyensis 2002] Length = 373 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 10/57 (17%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 +C+ C +C C AIT+ + ID KC+ CG C C A Sbjct: 194 SKCVGCGMCVKSCAQLAITLNEKKKAV----------IDYEKCVGCGQCVAVCQFGA 240 Score = 34.3 bits (77), Expect = 6.0, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 4/60 (6%) Query: 65 ACKLCEAICPAQAITIESGPRCHDGTRRTVR----YDIDMIKCIYCGLCQEACPVDAIVE 120 K E AI G + + I KC+ CG+C ++C AI Sbjct: 154 HFKGHEMTGFGGAIKNIGMGSGSRGGKLFMHSSSKPVIKTSKCVGCGMCVKSCAQLAITL 213 >gi|301060593|ref|ZP_07201428.1| CobQ/CobB/MinD/ParA nucleotide binding domain protein [delta proteobacterium NaphS2] gi|300445296|gb|EFK09226.1| CobQ/CobB/MinD/ParA nucleotide binding domain protein [delta proteobacterium NaphS2] Length = 284 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 25/76 (32%), Gaps = 12/76 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+C C C IC +AI + + C CG C E CP AI Sbjct: 63 DMEKCTLCGKCGEICQFRAIVVIGETVLPF-----------VEMCHSCGGCMEVCPEKAI 111 Query: 119 VEGPNFEFATETRQEL 134 E E R + Sbjct: 112 TETTR-ELGVIERGQF 126 >gi|300114447|ref|YP_003761022.1| electron transport complex RnfABCDGE type subunit B [Nitrosococcus watsonii C-113] gi|299540384|gb|ADJ28701.1| electron transport complex, RnfABCDGE type, B subunit [Nitrosococcus watsonii C-113] Length = 209 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 27/84 (32%), Gaps = 10/84 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 + R E E RCI C LC CP AI + + Sbjct: 88 QAPKPLDPARQEKLKALAVIDENRCIGCTLCIQACPVDAILGAPKQ----------LHTV 137 Query: 99 DMIKCIYCGLCQEACPVDAIVEGP 122 +C C LC CPVD I P Sbjct: 138 ITAECTGCELCVAPCPVDCIEMVP 161 >gi|296452037|ref|ZP_06893750.1| possible dihydroorotate oxidase [Clostridium difficile NAP08] gi|296879567|ref|ZP_06903548.1| possible dihydroorotate oxidase [Clostridium difficile NAP07] gi|296259110|gb|EFH05992.1| possible dihydroorotate oxidase [Clostridium difficile NAP08] gi|296429449|gb|EFH15315.1| possible dihydroorotate oxidase [Clostridium difficile NAP07] Length = 369 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 12/60 (20%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + +CI CK C C +A+ + ID KC CGLC CP A+ Sbjct: 310 DDNKCIKCKQCVTSCVYEALEVTDKLN------------IDADKCFGCGLCVTRCPKGAL 357 >gi|224367565|ref|YP_002601728.1| QmoB [Desulfobacterium autotrophicum HRM2] gi|223690281|gb|ACN13564.1| QmoB [Desulfobacterium autotrophicum HRM2] Length = 778 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 23/68 (33%), Gaps = 10/68 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + +RC CK C CP A+ + I+ +C CG C A Sbjct: 559 MTFPEFFMQRCTQCKRCTVECPFGALDDDEKGTPK----------INPTRCRRCGTCMGA 608 Query: 113 CPVDAIVE 120 CP I Sbjct: 609 CPERIISF 616 >gi|163787368|ref|ZP_02181815.1| Pyridine nucleotide-disulphide oxidoreductase domain protein [Flavobacteriales bacterium ALC-1] gi|159877256|gb|EDP71313.1| Pyridine nucleotide-disulphide oxidoreductase domain protein [Flavobacteriales bacterium ALC-1] Length = 529 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 20/62 (32%), Gaps = 9/62 (14%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 +CI+C C C + +I C+ CG+C CP + Sbjct: 451 QCISCGNCSNSCEMGIDVRHYAQKGE---------NIVRSSCVGCGICSAVCPRGVLKLE 501 Query: 122 PN 123 + Sbjct: 502 ND 503 >gi|160933483|ref|ZP_02080871.1| hypothetical protein CLOLEP_02329 [Clostridium leptum DSM 753] gi|156867360|gb|EDO60732.1| hypothetical protein CLOLEP_02329 [Clostridium leptum DSM 753] Length = 313 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 22/70 (31%), Positives = 27/70 (38%), Gaps = 12/70 (17%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + CI C C C A A TIE+G D C CG C ++C A+V Sbjct: 64 PKNCIGCGACVKACKAGARTIENG-----------ILHYDRSVCTGCGACAQSCFTGALV 112 Query: 120 EGPNFEFATE 129 E A E Sbjct: 113 MSGK-EMAVE 121 >gi|331088814|ref|ZP_08337724.1| hypothetical protein HMPREF1025_01307 [Lachnospiraceae bacterium 3_1_46FAA] gi|330407337|gb|EGG86840.1| hypothetical protein HMPREF1025_01307 [Lachnospiraceae bacterium 3_1_46FAA] Length = 291 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 37/122 (30%), Gaps = 30/122 (24%) Query: 18 GAFFLCLRYFFKAKTTI-----------NYPFEKGSTS----PRFRGEHALRRYPNGEER 62 L + F K TI PF K + + + E+ Sbjct: 176 SGIRAALGHLFTFKFTILALFIILSILFYRPFCKWICPLGAIYSLFNKVSFLKIQVDHEK 235 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C+ C +C +++ CI CG C +ACP DAI Sbjct: 236 CVGCQKCSRVCKMDVNVVDTPNHPE---------------CIRCGECMKACPTDAICYHY 280 Query: 123 NF 124 F Sbjct: 281 GF 282 >gi|330997031|ref|ZP_08320893.1| ferredoxin [Paraprevotella xylaniphila YIT 11841] gi|329571529|gb|EGG53211.1| ferredoxin [Paraprevotella xylaniphila YIT 11841] Length = 318 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 29/83 (34%), Gaps = 11/83 (13%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P + + + CI C C CP +AIT+ + Sbjct: 198 PKNRRMVVMCVNRDKGAVANKVCKASCIGCGKCVKTCPFEAITLNNNLAY---------- 247 Query: 97 DIDMIKCIYCGLCQEACPVDAIV 119 ID KC C C+EACP AI Sbjct: 248 -IDPEKCKLCRKCEEACPKGAIH 269 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 27/76 (35%), Gaps = 8/76 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD--------IDMIKCIYCGLCQ 110 EERC AC C CP + I + + + CI CG C Sbjct: 172 DEERCTACGACVKTCPRRVIELRPKGPKNRRMVVMCVNRDKGAVANKVCKASCIGCGKCV 231 Query: 111 EACPVDAIVEGPNFEF 126 + CP +AI N + Sbjct: 232 KTCPFEAITLNNNLAY 247 Score = 33.9 bits (76), Expect = 7.3, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 9/60 (15%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C A C A++I ++D +C CG C + CP I P Sbjct: 145 CLGGGDCVAACQFGALSINPETGLP---------EVDEERCTACGACVKTCPRRVIELRP 195 >gi|313114802|ref|ZP_07800302.1| putative ferredoxin [Faecalibacterium cf. prausnitzii KLE1255] gi|310622857|gb|EFQ06312.1| putative ferredoxin [Faecalibacterium cf. prausnitzii KLE1255] Length = 299 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 26/79 (32%), Gaps = 11/79 (13%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 + + CIAC +CE C AI + G ID Sbjct: 191 RKPVVMCSNKDKGPVAMKACTTSCIACGMCERTCKFDAIHVVDG-----------VARID 239 Query: 100 MIKCIYCGLCQEACPVDAI 118 KC CG+C + CP I Sbjct: 240 YDKCKGCGMCAQKCPKHII 258 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 6/67 (8%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRC------HDGTRRTVRYDIDMIKCIYCGLCQEA 112 +++C C C ICP Q I I+ G + + V CI CG+C+ Sbjct: 164 DKDKCTGCGACANICPKQVIMIDVGGPRKPVVMCSNKDKGPVAMKACTTSCIACGMCERT 223 Query: 113 CPVDAIV 119 C DAI Sbjct: 224 CKFDAIH 230 Score = 35.1 bits (79), Expect = 3.0, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 20/58 (34%), Gaps = 11/58 (18%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C+ C +C AI I G +D KC CG C CP I+ Sbjct: 139 CVGLGDCTKVCKFDAIHIVDG-----------VAKVDKDKCTGCGACANICPKQVIMI 185 >gi|307106800|gb|EFN55045.1| hypothetical protein CHLNCDRAFT_24040 [Chlorella variabilis] Length = 642 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 25/66 (37%), Gaps = 2/66 (3%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQEACPVDAI 118 RC+ C C C G + R +D+ KCI CG C CPV AI Sbjct: 139 CRCLKCGRCVTACGLVQEMDVLGMKGRSRERHPAVLTEAMDLSKCISCGQCAVMCPVGAI 198 Query: 119 VEGPNF 124 E + Sbjct: 199 TERAEW 204 Score = 42.0 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 27/85 (31%), Gaps = 8/85 (9%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIAC---KLCEAICPAQAITIESGPRCHD 88 T + P K RG AL + N C+ C CE + Sbjct: 72 VTTDSPQVK----DSIRGVLALLK-ANHPADCMTCDVSGRCEFQARPGFWGGAWAGQRMA 126 Query: 89 GTRRTVRYDIDMIKCIYCGLCQEAC 113 R+ + +C+ CG C AC Sbjct: 127 CPRQRPMLPMLGCRCLKCGRCVTAC 151 >gi|302335287|ref|YP_003800494.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Olsenella uli DSM 7084] gi|301319127|gb|ADK67614.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Olsenella uli DSM 7084] Length = 1184 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 29/102 (28%), Gaps = 23/102 (22%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA----------------QAITIESGPRCHDGTR 91 RG + + +CI C C +CP G + T Sbjct: 683 RGTAVMVPRWDE-SKCIQCNNCAYVCPHATIRPVAMNAEEAAAAPEAMKTVGLKIPKNTG 741 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVD------AIVEGPNFEFA 127 T + + C+ C C CP A+ P E A Sbjct: 742 YTFTVAVSPLDCMGCYNCVAICPKSDMKEGGALTMVPQEEEA 783 >gi|293396004|ref|ZP_06640285.1| pyruvate-ferredoxin oxidoreductase [Serratia odorifera DSM 4582] gi|291421502|gb|EFE94750.1| pyruvate-ferredoxin oxidoreductase [Serratia odorifera DSM 4582] Length = 1177 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 25/102 (24%), Gaps = 18/102 (17%) Query: 31 KTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAICPA------------- 75 + P + + A + E C C C A CP Sbjct: 655 PVSAFPPDGTWPVGTTQWEKRNIAEQVPIWQAELCTQCNHCVAACPHSAIRAKVVAPEAI 714 Query: 76 -QAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACP 114 A R +Y + C C LC E CP Sbjct: 715 ADAPAGLQSLDVKARDMRGQKYLLQVAPEDCTGCNLCVEVCP 756 >gi|257094156|ref|YP_003167797.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257046680|gb|ACV35868.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 614 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 23/80 (28%), Gaps = 20/80 (25%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRR--------------------TVRYDIDMIK 102 CI C C ICP I+ + R D Sbjct: 510 CIECDACMDICPMDCISFTGNAEEDELRPRLRAPALNTSQDLYVSEILKTGRVMVKDEDV 569 Query: 103 CIYCGLCQEACPVDAIVEGP 122 C++CGLC E CP A Sbjct: 570 CLHCGLCAERCPTGAWDMQK 589 Score = 34.3 bits (77), Expect = 5.1, Method: Composition-based stats. Identities = 10/26 (38%), Positives = 12/26 (46%) Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFE 125 CI C C + CP+D I N E Sbjct: 507 PKLCIECDACMDICPMDCISFTGNAE 532 >gi|257064355|ref|YP_003144027.1| predicted oxidoreductase of aldo/keto reductase family [Slackia heliotrinireducens DSM 20476] gi|256792008|gb|ACV22678.1| predicted oxidoreductase of aldo/keto reductase family [Slackia heliotrinireducens DSM 20476] Length = 370 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 26/79 (32%), Gaps = 12/79 (15%) Query: 62 RCIACKLCEAICPAQAI-----------TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 C +CK C CP R + V+ CI+CG C+ Sbjct: 290 PCTSCKYCMKECPMNINIAGIFDAVNRGAQFGNDRAKRTYKMNVQSYGKASDCIHCGQCE 349 Query: 111 EACPVDAIVEGPNFEFATE 129 +ACP I E A E Sbjct: 350 DACPQH-IAVMDELEKAAE 367 >gi|167042247|gb|ABZ06978.1| putative 4Fe-4S binding domain protein [uncultured marine crenarchaeote HF4000_ANIW93J19] gi|167042964|gb|ABZ07678.1| putative 4Fe-4S binding domain protein [uncultured marine crenarchaeote HF4000_ANIW137N18] Length = 103 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 1/69 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+RCI C LC IC + G +R + +CI G C CP +I Sbjct: 10 DEQRCIGCALCVEICTTLGPDVLRVKPVE-GWKRGKAFVFYPERCISDGACIGVCPTKSI 68 Query: 119 VEGPNFEFA 127 + Sbjct: 69 FWMRPMNYT 77 >gi|188584663|ref|YP_001916208.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349350|gb|ACB83620.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 1175 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 18/93 (19%) Query: 51 HALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY 96 A++ ++ CI C C +CP +A + ++Y Sbjct: 679 IAVKVPEWQKDNCIQCNQCSLVCPHAAIRPFLLDETELSKAPENFETKKALGKALSGLQY 738 Query: 97 DID--MIKCIYCGLCQEACP--VDAIVEGPNFE 125 I + C CG C++ CP A++ P E Sbjct: 739 RIQVSPLDCAGCGNCEQVCPAKEKALIMKPRPE 771 >gi|182416719|ref|ZP_02948119.1| pyruvate:ferredoxin oxidoreductase [Clostridium butyricum 5521] gi|237667533|ref|ZP_04527517.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379444|gb|EDT76938.1| pyruvate:ferredoxin oxidoreductase [Clostridium butyricum 5521] gi|237655881|gb|EEP53437.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium butyricum E4 str. BoNT E BL5262] Length = 1171 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 27/105 (25%), Positives = 37/105 (35%), Gaps = 20/105 (19%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTR- 91 F G+T+ RG +RCI C C +CP I T E + G + Sbjct: 666 FMHGTTAYEKRGVAVNVPEWI-PDRCIQCNQCSYVCPHATIRPFLLTDEEKNKAPQGFKS 724 Query: 92 ---------RTVRYDI--DMIKCIYCGLCQEACPVD--AIVEGPN 123 + Y I + C CG C E CP A++ P Sbjct: 725 VLPKGIKSEEQLNYTIGVSPLDCTGCGNCAEVCPAPGKALIMKPQ 769 >gi|192289233|ref|YP_001989838.1| formate dehydrogenase, alpha subunit [Rhodopseudomonas palustris TIE-1] gi|192282982|gb|ACE99362.1| formate dehydrogenase, alpha subunit [Rhodopseudomonas palustris TIE-1] Length = 948 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 29/97 (29%), Gaps = 6/97 (6%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVR 95 EK + +CI C C C T +G ++ Sbjct: 146 EKHPNPGLDESNPYFTYDAS---KCIVCSRCVRACEEVQGTFALTIAGRGFDSVVSPGMQ 202 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 +C+ CG C +ACP + E E T R Sbjct: 203 ESFLGSECVSCGACVQACPTATLNEKSVIEIGTPERS 239 >gi|281356043|ref|ZP_06242536.1| putative PAS/PAC sensor protein [Victivallis vadensis ATCC BAA-548] gi|281317412|gb|EFB01433.1| putative PAS/PAC sensor protein [Victivallis vadensis ATCC BAA-548] Length = 572 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 11/63 (17%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C CP +AI I G + C+ CG+C + CP A Sbjct: 12 NICHDCYKCIRHCPCKAIRIVDGRAG-----------VIQDLCVACGMCVKVCPAHAKKI 60 Query: 121 GPN 123 P+ Sbjct: 61 RPD 63 >gi|158522547|ref|YP_001530417.1| Na(+)-translocating NADH-quinone reductase subunit A [Desulfococcus oleovorans Hxd3] gi|158511373|gb|ABW68340.1| Na-translocating NADH-quinone reductase subunit A [Desulfococcus oleovorans Hxd3] Length = 446 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 1/59 (1%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 E C+ C C +CP + + G ++ C+ CGLC CP Sbjct: 366 MHGEERACVNCGTCATVCPVDILPQFTVKAVLAGE-VEESLAHGLLDCVECGLCAYVCP 423 >gi|121533899|ref|ZP_01665725.1| Cobyrinic acid a,c-diamide synthase [Thermosinus carboxydivorans Nor1] gi|121307410|gb|EAX48326.1| Cobyrinic acid a,c-diamide synthase [Thermosinus carboxydivorans Nor1] Length = 306 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 22/73 (30%), Gaps = 14/73 (19%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 G A C C +C +C AIT + + C CG Sbjct: 53 HGFTAGFEPHVDHTNCNGCGICTRLCRFGAITSGTLT--------------SPLDCEGCG 98 Query: 108 LCQEACPVDAIVE 120 +C CP AI Sbjct: 99 VCAFNCPQHAIAM 111 >gi|90416712|ref|ZP_01224642.1| formate dehydrogenase, alpha subunit [marine gamma proteobacterium HTCC2207] gi|90331465|gb|EAS46701.1| formate dehydrogenase, alpha subunit [marine gamma proteobacterium HTCC2207] Length = 948 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 23/74 (31%), Gaps = 3/74 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T G + D +C+ CG C Sbjct: 161 YFTFDPSKCIVCSRCVRACEEVQGTFALTIDGRGFESKVSASQAEDFMDSECVSCGACVN 220 Query: 112 ACPVDAIVEGPNFE 125 ACP + E E Sbjct: 221 ACPTATLTEKSIIE 234 >gi|126699072|ref|YP_001087969.1| putative iron-sulfur protein [Clostridium difficile 630] gi|254975022|ref|ZP_05271494.1| putative iron-sulfur protein [Clostridium difficile QCD-66c26] gi|255092411|ref|ZP_05321889.1| putative iron-sulfur protein [Clostridium difficile CIP 107932] gi|255306435|ref|ZP_05350606.1| putative iron-sulfur protein [Clostridium difficile ATCC 43255] gi|255314150|ref|ZP_05355733.1| putative iron-sulfur protein [Clostridium difficile QCD-76w55] gi|255516828|ref|ZP_05384504.1| putative iron-sulfur protein [Clostridium difficile QCD-97b34] gi|255649929|ref|ZP_05396831.1| putative iron-sulfur protein [Clostridium difficile QCD-37x79] gi|260683084|ref|YP_003214369.1| putative iron-sulfur protein [Clostridium difficile CD196] gi|260686682|ref|YP_003217815.1| putative iron-sulfur protein [Clostridium difficile R20291] gi|306520014|ref|ZP_07406361.1| putative iron-sulfur protein [Clostridium difficile QCD-32g58] gi|115250509|emb|CAJ68333.1| putative iron-sulfur protein [Clostridium difficile] gi|260209247|emb|CBA62547.1| putative iron-sulfur protein [Clostridium difficile CD196] gi|260212698|emb|CBE03782.1| putative iron-sulfur protein [Clostridium difficile R20291] Length = 424 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 7/69 (10%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E C+ C C CP AI+ ID +C+ CG+C C + Sbjct: 289 NINHENCVKCGKCITACPIDAISKVKEDGKEY-------IKIDEDRCLGCGVCVRNCHKN 341 Query: 117 AIVEGPNFE 125 +I+ E Sbjct: 342 SIMLLKRDE 350 >gi|83590444|ref|YP_430453.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica ATCC 39073] gi|83573358|gb|ABC19910.1| putative sulfite reductase-associated electron transfer protein DsrO [Moorella thermoacetica ATCC 39073] Length = 258 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 30/89 (33%), Gaps = 13/89 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHD----GTRRTVRYDIDMIKCIYC-------- 106 RCI C+ C A CP A + R + KC C Sbjct: 148 DYHRCIGCRYCMAACPYGARSFNFRDPRPYIKELNPAYPTREKGVVEKCTLCVERIDTGL 207 Query: 107 -GLCQEACPVDAIVEGPNFEFATETRQEL 134 C E CP AI G + ++E RQ L Sbjct: 208 PPACVEVCPAKAITFGDLEDPSSEARQLL 236 Score = 35.1 bits (79), Expect = 3.5, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 32/112 (28%), Gaps = 20/112 (17%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACK--LCEAICPAQAITIESGPRCHDGTRRTV 94 P+ + + C C C +CP +A R+ Sbjct: 94 PYGDAFPDQQHELMAEDIKNNPFIVLCNHCDKPPCVRVCPTRATFK----------RQDG 143 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEG--------PNFEFATETRQELYYDK 138 ID +CI C C ACP A A TR++ +K Sbjct: 144 IVMIDYHRCIGCRYCMAACPYGARSFNFRDPRPYIKELNPAYPTREKGVVEK 195 >gi|57642013|ref|YP_184491.1| 4Fe-4S cluster-binding protein [Thermococcus kodakarensis KOD1] gi|57160337|dbj|BAD86267.1| 4Fe-4S cluster-binding protein [Thermococcus kodakarensis KOD1] Length = 162 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 31/81 (38%), Gaps = 5/81 (6%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 K S P + L E CI C C +CPA A+ D + ++ Sbjct: 6 KCSLIPLEHLPNGLGVPQIDPELCIGCGACVNVCPAGAL-----QAIDDYMEGIRKISLN 60 Query: 100 MIKCIYCGLCQEACPVDAIVE 120 + KC C C+E CP AI Sbjct: 61 IGKCTPCTRCEEVCPTGAIKI 81 Score = 38.5 bits (88), Expect = 0.27, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 13/30 (43%) Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 ID CI CG C CP A+ ++ Sbjct: 21 VPQIDPELCIGCGACVNVCPAGALQAIDDY 50 >gi|45358388|ref|NP_987945.1| heterodisulfide reductase subunit A [Methanococcus maripaludis S2] gi|44921146|emb|CAF30381.1| heterodisulfide reductase subunit A [Methanococcus maripaludis S2] Length = 654 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 30/88 (34%), Gaps = 7/88 (7%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE-------SGPRCHDGTRRTVRYDI 98 F+ + + EE+C C CE +CP +Y I Sbjct: 229 NFKVKIEKKPRYLSEEKCTGCGSCEEVCPISVPNEFDMGIGLRKAIYKPFPQAVPAKYTI 288 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEF 126 D CI CGLC + C AI G E Sbjct: 289 DKESCIDCGLCAKVCGPQAIDYGQKPEI 316 Score = 40.5 bits (93), Expect = 0.080, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 21/64 (32%), Gaps = 7/64 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C AC +C CP A V ++ C CG C CP A+ Sbjct: 580 DENVCGACGICVQQCPYGAPRFVEKD-------GKVVAEVLSALCKGCGTCAAGCPSGAL 632 Query: 119 VEGP 122 + Sbjct: 633 EQSH 636 >gi|219668789|ref|YP_002459224.1| nitrite and sulphite reductase 4Fe-4S region [Desulfitobacterium hafniense DCB-2] gi|219539049|gb|ACL20788.1| nitrite and sulphite reductase 4Fe-4S region [Desulfitobacterium hafniense DCB-2] Length = 198 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 12/56 (21%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C+ C C A++ + KCI CG C +CP D I Sbjct: 90 CTGCQACCRSCQEGALSWQGELEFE------------PTKCIGCGDCVRSCPTDKI 133 >gi|310658148|ref|YP_003935869.1| periplasmic [fe] hydrogenase large subunit [Clostridium sticklandii DSM 519] gi|308824926|emb|CBH20964.1| Periplasmic [Fe] hydrogenase large subunit (Fe hydrogenlyase) [Clostridium sticklandii] Length = 456 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 10/80 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E C CK+C +CP AI+ ++G ID KC+ CG C + C A Sbjct: 6 DQELCTGCKMCSDVCPVDAISGDAGKPQS----------IDENKCVLCGQCVQMCSSFAS 55 Query: 119 VEGPNFEFATETRQELYYDK 138 V E + + K Sbjct: 56 VFDEEIEPIEKKLSDRKMLK 75 Score = 35.5 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 11/21 (52%), Positives = 13/21 (61%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID C C +C + CPVDAI Sbjct: 5 IDQELCTGCKMCSDVCPVDAI 25 >gi|303246231|ref|ZP_07332511.1| NADH dehydrogenase (quinone) [Desulfovibrio fructosovorans JJ] gi|302492294|gb|EFL52166.1| NADH dehydrogenase (quinone) [Desulfovibrio fructosovorans JJ] Length = 632 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 27/98 (27%), Positives = 35/98 (35%), Gaps = 19/98 (19%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGE--HALRRYPNGEERCIACKLCEAICPAQAITI 80 L++F K +E+ R R AL R C C+LC CP AI Sbjct: 549 TLKHFRKE-------YEEHVFEKRCRAGRCKALARPTINPALCKGCRLCVKACPVGAIMG 601 Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E + ID C+ CG C AC A+ Sbjct: 602 EKKQP----------HRIDEGLCVKCGACAAACKFGAV 629 Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 17/41 (41%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + + R I+ C C LC +ACPV AI+ Sbjct: 560 HVFEKRCRAGRCKALARPTINPALCKGCRLCVKACPVGAIM 600 >gi|302379604|ref|ZP_07268089.1| molybdopterin oxidoreductase Fe4S4 domain protein [Finegoldia magna ACS-171-V-Col3] gi|303234540|ref|ZP_07321177.1| molybdopterin oxidoreductase Fe4S4 domain protein [Finegoldia magna BVS033A4] gi|302312511|gb|EFK94507.1| molybdopterin oxidoreductase Fe4S4 domain protein [Finegoldia magna ACS-171-V-Col3] gi|302494374|gb|EFL54143.1| molybdopterin oxidoreductase Fe4S4 domain protein [Finegoldia magna BVS033A4] Length = 355 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 3/63 (4%) Query: 59 GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115 + +CI C C +C Q + + +D+ + K C CG C CP Sbjct: 149 DQNKCILCGKCVRVCEEVQCTHTIDFKNRGFDSYISTAFDLPLSKENCRMCGQCISVCPT 208 Query: 116 DAI 118 A+ Sbjct: 209 GAL 211 >gi|326202673|ref|ZP_08192541.1| hypothetical protein Cpap_2773 [Clostridium papyrosolvens DSM 2782] gi|325987257|gb|EGD48085.1| hypothetical protein Cpap_2773 [Clostridium papyrosolvens DSM 2782] Length = 256 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 23/66 (34%), Gaps = 11/66 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C++CE CP AI + + I +CI C C CP +A Sbjct: 190 DYALCTKCRMCEKFCPVNAIQLTN-----------QHMKIQHKQCISCMRCVNYCPQNAF 238 Query: 119 VEGPNF 124 G Sbjct: 239 TLGEKH 244 Score = 37.8 bits (86), Expect = 0.58, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 1/50 (2%) Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 + A+ S R + + R ID C C +C++ CPV+AI Sbjct: 167 SDAMRYISKGR-SIWIKTSERIGIDYALCTKCRMCEKFCPVNAIQLTNQH 215 >gi|289805686|ref|ZP_06536315.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 242 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 25/78 (32%), Gaps = 12/78 (15%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C C C CP I + I +C CG C CP A+ Sbjct: 145 PQECRMCGACWRSCPENVIQFDDD-----------TLTIAAARCTGCGGCAAVCPHQALR 193 Query: 120 EGPNFEFATETRQELYYD 137 + E A+ TR + Sbjct: 194 LRFDVEPAS-TRHSAVHT 210 Score = 34.7 bits (78), Expect = 4.5, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID +CI CG C CPVDAI Sbjct: 2 IDTTRCIACGDCLFVCPVDAI 22 >gi|254168436|ref|ZP_04875281.1| 4Fe-4S binding domain protein [Aciduliprofundum boonei T469] gi|289595766|ref|YP_003482462.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Aciduliprofundum boonei T469] gi|197622717|gb|EDY35287.1| 4Fe-4S binding domain protein [Aciduliprofundum boonei T469] gi|289533553|gb|ADD07900.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Aciduliprofundum boonei T469] Length = 166 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 9/99 (9%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 + Y + T+ +K R + + I C C+ ICP AI ++ Sbjct: 1 MTEEYLERGYLTLEELKKKVELPSEERLQGKHPVAVPECPQRIPCTPCKEICPVNAIKMD 60 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + ++ +CI C LC + CP A Sbjct: 61 NPNDPPV---------VNYDRCIGCSLCVQICPGLAFFM 90 >gi|169824849|ref|YP_001692460.1| NAD-dependent formate dehydrogenase subunit alpha [Finegoldia magna ATCC 29328] gi|167831654|dbj|BAG08570.1| NAD-dependent formate dehydrogenase alpha subunit [Finegoldia magna ATCC 29328] Length = 355 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 3/63 (4%) Query: 59 GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115 + +CI C C +C Q + + +D+ + K C CG C CP Sbjct: 149 DQNKCILCGKCVRVCEEVQCTHTIDFKNRGFDSYISTAFDLPLSKENCRMCGQCISVCPT 208 Query: 116 DAI 118 A+ Sbjct: 209 GAL 211 >gi|167747312|ref|ZP_02419439.1| hypothetical protein ANACAC_02028 [Anaerostipes caccae DSM 14662] gi|167653290|gb|EDR97419.1| hypothetical protein ANACAC_02028 [Anaerostipes caccae DSM 14662] Length = 202 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 33/97 (34%), Gaps = 18/97 (18%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + EE+C C LC + C AI + G I C G C Sbjct: 1 MIRQIIKIDEEKCNGCGLCASACHEGAIQMIGGKAKL----------IRDDYCDGLGNCL 50 Query: 111 EACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDR 147 CP AI + E R+ Y+K +L N + Sbjct: 51 PMCPTGAI--------SFEDREAPDYNKAAVLENQRK 79 >gi|134045695|ref|YP_001097181.1| CoB--CoM heterodisulfide reductase subunit A [Methanococcus maripaludis C5] gi|132663320|gb|ABO34966.1| CoB--CoM heterodisulfide reductase subunit A [Methanococcus maripaludis C5] Length = 654 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 30/88 (34%), Gaps = 7/88 (7%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE-------SGPRCHDGTRRTVRYDI 98 F+ + + EE+C C CE +CP +Y I Sbjct: 229 NFKVKIEKKPRYLSEEKCTGCGSCEEVCPISVPNEFDMGIGLRKAIYKPFPQAVPAKYTI 288 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEF 126 D CI CGLC + C AI G E Sbjct: 289 DKESCIDCGLCAKVCGPQAIDYGQKPEI 316 Score = 40.5 bits (93), Expect = 0.080, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 20/64 (31%), Gaps = 7/64 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C C +C CP A V ++ C CG C CP A+ Sbjct: 580 DENVCGGCGICVQQCPYGAPRFVEKD-------GKVVAEVLSALCKGCGTCAAGCPSGAL 632 Query: 119 VEGP 122 + Sbjct: 633 EQSH 636 >gi|154175333|ref|YP_001409057.1| NapH/MauN family ferredoxin-type protein [Campylobacter curvus 525.92] gi|112804050|gb|EAU01394.1| ferredoxin-type protein, NapH/MauN family [Campylobacter curvus 525.92] Length = 300 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 25/67 (37%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + RC C +C +C + + + D + + I C CG C + C DA Sbjct: 230 WDKNRCDHCLVCIDVCLVPHVLEMTKTKAKDSGEQKETFRIAGADCTLCGRCIDVCHQDA 289 Query: 118 IVEGPNF 124 + F Sbjct: 290 LKFDNGF 296 >gi|17228257|ref|NP_484805.1| bidirectional hydrogenase complex protein HoxU [Nostoc sp. PCC 7120] gi|17130107|dbj|BAB72719.1| hydrogenase chain U [Nostoc sp. PCC 7120] Length = 238 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 22/65 (33%), Gaps = 4/65 (6%) Query: 59 GEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLCQEACP 114 RC+ C C +C A T + R + T C CG C ACP Sbjct: 144 DHNRCVLCTRCIRVCDEIEGAHTWDMAGRGTNSHVITDLSQPWGTSDTCTSCGKCVNACP 203 Query: 115 VDAIV 119 AI Sbjct: 204 TGAIF 208 >gi|332298441|ref|YP_004440363.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Treponema brennaborense DSM 12168] gi|332181544|gb|AEE17232.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Treponema brennaborense DSM 12168] Length = 394 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 6/62 (9%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + + +C C C CP AI +E+ + +D KCI CGLC + Sbjct: 1 MNVSTVEKNKCFGCGSCFQACPKNAIRMEADSEGFLFPK------VDEEKCIDCGLCVKK 54 Query: 113 CP 114 CP Sbjct: 55 CP 56 Score = 34.7 bits (78), Expect = 3.8, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 14/25 (56%) Query: 101 IKCIYCGLCQEACPVDAIVEGPNFE 125 KC CG C +ACP +AI + E Sbjct: 9 NKCFGCGSCFQACPKNAIRMEADSE 33 >gi|284167342|ref|YP_003405620.1| NADH:ubiquinone oxidoreductase, subunit G, iron- sulphur binding protein [Haloterrigena turkmenica DSM 5511] gi|284016997|gb|ADB62947.1| NADH:ubiquinone oxidoreductase, subunit G, iron- sulphur binding protein [Haloterrigena turkmenica DSM 5511] Length = 320 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 5/77 (6%) Query: 57 PNGEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 +CI C C C + +E + ++ ++ C+ CG C Sbjct: 178 QIDRNKCILCNRCVEACNDVQVEGVLRMEGSGQDTRIGFQSDAETMEESTCVSCGHCVTV 237 Query: 113 CPVDAIVEGPNFEFATE 129 CP ++VE E AT Sbjct: 238 CPTGSLVEKGI-ENATT 253 >gi|257064390|ref|YP_003144062.1| 4Fe-4S protein [Slackia heliotrinireducens DSM 20476] gi|256792043|gb|ACV22713.1| 4Fe-4S protein [Slackia heliotrinireducens DSM 20476] Length = 450 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 24/66 (36%), Gaps = 6/66 (9%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + C +C++C CP AI+ G + C+ C LC+ CP Sbjct: 309 NIDTDICRSCRMCTVFCPTGAISRFDTKDDAFG------VEHRSALCMQCRLCETICPEH 362 Query: 117 AIVEGP 122 AI Sbjct: 363 AITVSD 368 Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 11/53 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C ++C AI+ +D KCI CG C ACP + Sbjct: 29 CLRCASVCTTGAISKSEAGV-----------TVDPDKCIGCGTCATACPSCCL 70 >gi|242064838|ref|XP_002453708.1| hypothetical protein SORBIDRAFT_04g011050 [Sorghum bicolor] gi|241933539|gb|EES06684.1| hypothetical protein SORBIDRAFT_04g011050 [Sorghum bicolor] Length = 597 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 24/54 (44%) Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C + +G +C + T+ + I C+ CG+C + CP +AI Sbjct: 21 CGQECRRRCPVNATGRQCIEVTQSSKVSLISEDLCVGCGICVKVCPFNAIQIIN 74 >gi|237737091|ref|ZP_04567572.1| anaerobic sulfite reduction protein C [Fusobacterium mortiferum ATCC 9817] gi|229420953|gb|EEO36000.1| anaerobic sulfite reduction protein C [Fusobacterium mortiferum ATCC 9817] Length = 321 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 24/87 (27%), Gaps = 8/87 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + G + +RCI+C C C T R Sbjct: 146 CPNDCAKVRMHDFGIMGMTLPQFEPDRCISCGACVRAC--------KKKSTGALTSVNYR 197 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGP 122 D KCI CG C CP A Sbjct: 198 PQRDHQKCIGCGECVINCPNMAWTRSK 224 >gi|167768634|ref|ZP_02440687.1| hypothetical protein CLOSS21_03193 [Clostridium sp. SS2/1] gi|167710158|gb|EDS20737.1| hypothetical protein CLOSS21_03193 [Clostridium sp. SS2/1] gi|291560581|emb|CBL39381.1| Coenzyme F420-reducing hydrogenase, beta subunit [butyrate-producing bacterium SSC/2] Length = 413 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 6/60 (10%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + ++ C AC C ICP AI ++ + ID KC+ CG CQ+ C Sbjct: 6 IILFDDKKNCCACGACMNICPKNAIKMQEDEYG------FLYPQIDENKCVQCGACQKVC 59 >gi|160932751|ref|ZP_02080140.1| hypothetical protein CLOLEP_01592 [Clostridium leptum DSM 753] gi|156867825|gb|EDO61197.1| hypothetical protein CLOLEP_01592 [Clostridium leptum DSM 753] Length = 270 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 27/85 (31%), Gaps = 11/85 (12%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + + + + CI C C C + A+T+ Sbjct: 188 VPLKPQAVVRCSNCDKGGVTRKLCKVGCIGCMKCVKACESGAVTVNQFKAS--------- 238 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVE 120 +D KC CG C E CP D I Sbjct: 239 --VDPAKCTACGKCVEVCPQDCIRM 261 Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 11/60 (18%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C A+C AI + +G ID +C C C +ACP I P Sbjct: 141 CMGLGDCAAVCEYDAIKVCNGVAS-----------IDPNRCKGCSKCVQACPKHLISFVP 189 >gi|78189918|ref|YP_380256.1| Fe-S-cluster-containing hydrogenase components 1-like [Chlorobium chlorochromatii CaD3] gi|78172117|gb|ABB29213.1| Fe-S-cluster-containing hydrogenase components 1-like protein [Chlorobium chlorochromatii CaD3] Length = 517 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 28/85 (32%), Gaps = 16/85 (18%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 EKG R LR E C+ ICP +A+ R Sbjct: 41 EKGMFPESRRYFTVLRCNHCAEPPCV------DICPVEALHKREDGIVDFDKR------- 87 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPN 123 +CI C C +ACP A+ P Sbjct: 88 ---RCIGCKACAQACPYGALYIDPE 109 Score = 42.0 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 37/123 (30%), Gaps = 14/123 (11%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLR--YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59 R + V E +F LR + + P E + R + + Sbjct: 34 RTWVKYVEKGMFPESRR-YFTVLRCNHCAEPPCVDICPVE----ALHKREDGIVDFDK-- 86 Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 RCI CK C CP A+ I+ +K C CP AIV Sbjct: 87 -RRCIGCKACAQACPYGALYIDPETHTSAKCNYCAHRKEVGMK----PACVVICPQQAIV 141 Query: 120 EGP 122 G Sbjct: 142 SGD 144 >gi|328706442|ref|XP_001944849.2| PREDICTED: dihydropyrimidine dehydrogenase [NADP+]-like [Acyrthosiphon pisum] Length = 1297 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 23/75 (30%), Gaps = 7/75 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117 E+ CI C C C +SG + ++ + C C LC CP+ Sbjct: 1185 NEDSCINCGKCYMACN------DSGYQAITMDPKSHAVHVQPDSCTGCTLCLTVCPIPGC 1238 Query: 118 IVEGPNFEFATETRQ 132 I R Sbjct: 1239 ISMVEKTVPHVVNRG 1253 >gi|301064114|ref|ZP_07204561.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein [delta proteobacterium NaphS2] gi|300441734|gb|EFK06052.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein [delta proteobacterium NaphS2] Length = 912 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 21/62 (33%), Gaps = 9/62 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+C C C CP Q I+ ID C CG+C CP AI Sbjct: 841 NTEKCAVCCTCVRTCPFQIPVIDREIGAAF---------IDASLCRGCGMCVAECPGKAI 891 Query: 119 VE 120 Sbjct: 892 FM 893 >gi|251791771|ref|YP_003006492.1| putative oxidoreductase Fe-S binding subunit [Dickeya zeae Ech1591] gi|247540392|gb|ACT09013.1| glutamate synthase, small subunit [Dickeya zeae Ech1591] Length = 667 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 31/86 (36%), Gaps = 15/86 (17%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRR 92 YP + PR R H + + C C C +CP QA+ R+ Sbjct: 30 RYPENRDDFHPRIRVFH--QGEQHTAVTCRHCEDSPCANVCPTQALV-----------RK 76 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAI 118 + KCI C C ACP AI Sbjct: 77 QDGIQLVAEKCIGCKTCVLACPFGAI 102 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 11/75 (14%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC---GLCQEACPVDA 117 E+CI CK C CP AIT+E+ + + CI C EACP A Sbjct: 85 EKCIGCKTCVLACPFGAITVENQAQGATAHK--------CDLCIGRPEGQACVEACPTQA 136 Query: 118 IVEGPNFEFATETRQ 132 + + R+ Sbjct: 137 LQLVSEHSLEEQRRE 151 Score = 37.4 bits (85), Expect = 0.70, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 19/66 (28%), Gaps = 6/66 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY----DIDMIKCIYCGL--CQEA 112 + CI C CE C D R + + C +C C Sbjct: 8 NAKDCIGCNACEIACVISHNHGRYPENRDDFHPRIRVFHQGEQHTAVTCRHCEDSPCANV 67 Query: 113 CPVDAI 118 CP A+ Sbjct: 68 CPTQAL 73 >gi|297587233|ref|ZP_06945878.1| NAD-dependent formate dehydrogenase [Finegoldia magna ATCC 53516] gi|297575214|gb|EFH93933.1| NAD-dependent formate dehydrogenase [Finegoldia magna ATCC 53516] Length = 355 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 3/63 (4%) Query: 59 GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115 + +CI C C +C Q + + +D+ + K C CG C CP Sbjct: 149 DQNKCILCGKCVRVCEEVQCTHTIDFKNRGFDSYISTAFDLPLSKENCRMCGQCISVCPT 208 Query: 116 DAI 118 A+ Sbjct: 209 GAL 211 >gi|255659849|ref|ZP_05405258.1| putative glutamate synthase, iron-sulfur cluster-binding subunit [Mitsuokella multacida DSM 20544] gi|260847926|gb|EEX67933.1| putative glutamate synthase, iron-sulfur cluster-binding subunit [Mitsuokella multacida DSM 20544] Length = 543 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 34/96 (35%), Gaps = 18/96 (18%) Query: 54 RRYPNGEERCIACKLCEAICPA---------QAITIESGPRCHDGTRRTVRYDIDM---- 100 +RC C C A C Q++T+ P VR I Sbjct: 16 WIIEYHPDRCTMCGSCVASCSFKSIKVAVRGQSLTVSEKPVPEPKKIHRVRPVIKQVASL 75 Query: 101 -IKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 C CG+C++ CP DAI N +TR+ L Sbjct: 76 TDFCRGCGICEKVCPNDAIHPVRN----PDTRKTLL 107 >gi|223558019|gb|ACM91025.1| NADH:ubiquinone oxidoreductase subunit [uncultured bacterium URE4] Length = 597 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 10/68 (14%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 AL++Y +C C C CP AI+ + I+ + CI CG C Sbjct: 537 KALKKYMIDPAKCKGCTACARACPVSAISGTLK----------NPHVINQLDCIKCGTCV 586 Query: 111 EACPVDAI 118 E C AI Sbjct: 587 EKCKFGAI 594 Score = 41.6 bits (96), Expect = 0.036, Method: Composition-based stats. Identities = 13/43 (30%), Positives = 16/43 (37%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 + + +Y ID KC C C ACPV AI Sbjct: 525 HVTEKKCRAGQCKALKKYMIDPAKCKGCTACARACPVSAISGT 567 >gi|187776517|ref|ZP_02992990.1| hypothetical protein CLOSPO_00014 [Clostridium sporogenes ATCC 15579] gi|187775176|gb|EDU38978.1| hypothetical protein CLOSPO_00014 [Clostridium sporogenes ATCC 15579] Length = 392 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 5/58 (8%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+CI C C +CP + I+ + +M KCI C CQE CP AI Sbjct: 324 EKCIGCSRCAEVCPEKPYVIDMIKKGDKKIPVW-----NMKKCIRCFCCQELCPKGAI 376 >gi|167760479|ref|ZP_02432606.1| hypothetical protein CLOSCI_02853 [Clostridium scindens ATCC 35704] gi|167661845|gb|EDS05975.1| hypothetical protein CLOSCI_02853 [Clostridium scindens ATCC 35704] Length = 253 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 31/94 (32%), Gaps = 12/94 (12%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 K +R + + P +C +C C A CP AI ++ Sbjct: 156 ELKVPGKMPYREYNGVPFKPKARSKCTSCGKCAAECPVGAIPKDA------------PST 203 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 +D KCI C C CP A G A + Sbjct: 204 VDDKKCISCMRCVAICPYGARTLGKVMLLAASQK 237 >gi|121534100|ref|ZP_01665925.1| electron transport complex, RnfABCDGE type, B subunit [Thermosinus carboxydivorans Nor1] gi|121307203|gb|EAX48120.1| electron transport complex, RnfABCDGE type, B subunit [Thermosinus carboxydivorans Nor1] Length = 296 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 22/67 (32%), Gaps = 10/67 (14%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 + + C+ C C AIT+ ID KC CG C+ CP Sbjct: 135 FKTCKYGCLGLGTCAKNCTFNAITMSPDGLPV----------IDPDKCTGCGKCETVCPK 184 Query: 116 DAIVEGP 122 I P Sbjct: 185 QVITMMP 191 Score = 42.0 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 5/70 (7%) Query: 59 GEERCIACKLCEAICPAQAITIES-----GPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 ++C C CE +CP Q IT+ C+ + V + CI C LC C Sbjct: 168 DPDKCTGCGKCETVCPKQVITMMPLGARVRVNCNSKDKGAVARKACSVACIGCSLCAREC 227 Query: 114 PVDAIVEGPN 123 P AI N Sbjct: 228 PHGAIKIENN 237 >gi|126699129|ref|YP_001088026.1| putative iron-sulfur protein [Clostridium difficile 630] gi|255306494|ref|ZP_05350665.1| putative iron-sulfur protein [Clostridium difficile ATCC 43255] gi|115250566|emb|CAJ68390.1| putative iron-sulfur protein [Clostridium difficile] Length = 382 Score = 44.7 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 11/67 (16%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + CI C C+ CPA I I + ID+ KCI C C E CP AI Sbjct: 323 FQDCIKCGKCKEACPASTIEIGTKGAI-----------IDLSKCIRCYCCHELCPKKAID 371 Query: 120 EGPNFEF 126 NF F Sbjct: 372 VKRNFVF 378 >gi|323487463|ref|ZP_08092758.1| 4Fe-4S ferredoxin [Clostridium symbiosum WAL-14163] gi|323692307|ref|ZP_08106546.1| 4Fe-4S ferredoxin [Clostridium symbiosum WAL-14673] gi|323399232|gb|EGA91635.1| 4Fe-4S ferredoxin [Clostridium symbiosum WAL-14163] gi|323503632|gb|EGB19455.1| 4Fe-4S ferredoxin [Clostridium symbiosum WAL-14673] Length = 295 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 23/72 (31%), Gaps = 12/72 (16%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 +R + P + C C LC CPA AI E KCI Sbjct: 207 PYREYGGVPFKPEADNSCTGCGLCAKECPAGAIPAEKPSSVDK------------EKCIS 254 Query: 106 CGLCQEACPVDA 117 C C CP A Sbjct: 255 CMRCVSVCPRHA 266 Score = 34.3 bits (77), Expect = 6.3, Method: Composition-based stats. Identities = 9/17 (52%), Positives = 10/17 (58%) Query: 103 CIYCGLCQEACPVDAIV 119 C CGLC + CP AI Sbjct: 224 CTGCGLCAKECPAGAIP 240 >gi|317479124|ref|ZP_07938264.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 4_1_36] gi|316904696|gb|EFV26510.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 4_1_36] Length = 300 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 27/81 (33%), Gaps = 8/81 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------DMIKCIYCGLCQ 110 EE+C AC C CP I I + + CI CG C Sbjct: 169 DEEKCTACGACAKACPKSIIEIRPQGKKSRRIYVQCVNKDKGAVARKACTVACIGCGKCV 228 Query: 111 EACPVDAIVEGPNFEFATETR 131 + CP +AI N + + Sbjct: 229 KVCPFEAITLENNLAYIDPNK 249 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 9/65 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C C A C AI + ++D KC CG C +ACP I Sbjct: 138 CSYGCLGCGDCVAACQFDAIHMNPETGLP---------EVDEEKCTACGACAKACPKSII 188 Query: 119 VEGPN 123 P Sbjct: 189 EIRPQ 193 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 11/60 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C C +CP +AIT+E+ ID KC C C+EACP + I Sbjct: 217 CTVACIGCGKCVKVCPFEAITLENNLAY-----------IDPNKCKSCRKCEEACPQNTI 265 >gi|319795810|ref|YP_004157450.1| formate dehydrogenase, alpha subunit [Variovorax paradoxus EPS] gi|315598273|gb|ADU39339.1| formate dehydrogenase, alpha subunit [Variovorax paradoxus EPS] Length = 958 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 22/69 (31%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T SG +C+ CG C E Sbjct: 160 YFTYDPSKCIVCNRCVRACEETQGTFALTISGRGFESRVSPGQDEAFMESECVSCGACVE 219 Query: 112 ACPVDAIVE 120 ACP + E Sbjct: 220 ACPTATLQE 228 >gi|300853892|ref|YP_003778876.1| NADH dehydrogenase I subunit F [Clostridium ljungdahlii DSM 13528] gi|300434007|gb|ADK13774.1| NADH dehydrogenase I, F subunit [Clostridium ljungdahlii DSM 13528] Length = 599 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 10/68 (14%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 L + E++C C +C+ CPA IT E + ID KC+ CG C Sbjct: 539 KKLTTFGIDEDKCKGCDMCKKNCPADCITGEIKKP----------HTIDADKCLRCGNCM 588 Query: 111 EACPVDAI 118 C DA+ Sbjct: 589 NICKFDAV 596 Score = 35.1 bits (79), Expect = 3.0, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 19/40 (47%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 I++ ++ + ID KC C +C++ CP D I Sbjct: 527 HIKNKRCRAGVCKKLTTFGIDEDKCKGCDMCKKNCPADCI 566 >gi|300121889|emb|CBK22463.2| unnamed protein product [Blastocystis hominis] Length = 1181 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 17/91 (18%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG + N ++ C C C +ICP +A + + Sbjct: 670 RGMATIVPVWN-KDTCTQCNQCASICPHSVIRPFLMDAEETKKAPASFTYLPAVGDELKG 728 Query: 94 VRYDID--MIKCIYCGLCQEACPVDAIVEGP 122 + + I + C C +C CP +++ P Sbjct: 729 LNFTIQASPLDCTGCEVCATVCPTESLKMEP 759 >gi|294141107|ref|YP_003557085.1| electron transport complex protein rnfB [Shewanella violacea DSS12] gi|293327576|dbj|BAJ02307.1| electron transport complex protein rnfB [Shewanella violacea DSS12] Length = 189 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 25/82 (30%), Gaps = 10/82 (12%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100 + E+ CI C C CP AI + + + Sbjct: 92 PEPLTATEEVQVKKVAYIREDECIGCTKCIQACPVDAILGAGK----------LMHTVIT 141 Query: 101 IKCIYCGLCQEACPVDAIVEGP 122 C C LC E CPVD I P Sbjct: 142 DYCTGCDLCVEPCPVDCIDMLP 163 >gi|256810207|ref|YP_003127576.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus fervens AG86] gi|256793407|gb|ACV24076.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus fervens AG86] Length = 657 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 29/80 (36%), Gaps = 7/80 (8%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAIT-------IESGPRCHDGTRRTVRYDI 98 F + E+ C C C A+CP + + Y I Sbjct: 228 NFEVTIEKKPRYVDEDVCTGCGACAAVCPIEVPNEFDLGLGTRKAIYVPFPQAVPLIYTI 287 Query: 99 DMIKCIYCGLCQEACPVDAI 118 DM CI CGLC++AC AI Sbjct: 288 DMEHCIRCGLCEKACGPGAI 307 Score = 42.0 bits (97), Expect = 0.031, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 7/71 (9%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 + R E+ C C++C +CP AI+ + ++ + C CG C Sbjct: 570 RIEMIRAVVDEDVCGGCQVCAKMCPYNAISYVEKD-------GHLVAQVNDVACKGCGAC 622 Query: 110 QEACPVDAIVE 120 ACP A+ Sbjct: 623 AGACPSGAMQL 633 >gi|269122350|ref|YP_003310527.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sebaldella termitidis ATCC 33386] gi|268616228|gb|ACZ10596.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sebaldella termitidis ATCC 33386] Length = 276 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 39/104 (37%), Gaps = 22/104 (21%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 KG+ +R A+ P+ ++ C C LC ICP AI+ E + Sbjct: 182 EVKGNFP--YREPAAIPLNPSVQKTCRKCGLCAGICPVNAISTEQPEK------------ 227 Query: 98 IDMIKCIYCGLCQEACPVDAIVE--------GPNFEFATETRQE 133 I+ CI C C ACP ++ FE R+E Sbjct: 228 INRKVCIRCTACFTACPTNSRGFSGVRYALASKIFEKKFSARRE 271 >gi|160890331|ref|ZP_02071334.1| hypothetical protein BACUNI_02772 [Bacteroides uniformis ATCC 8492] gi|156860063|gb|EDO53494.1| hypothetical protein BACUNI_02772 [Bacteroides uniformis ATCC 8492] Length = 300 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 27/81 (33%), Gaps = 8/81 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------DMIKCIYCGLCQ 110 EE+C AC C CP I I + + CI CG C Sbjct: 169 DEEKCTACGACAKACPKSIIEIRPQGKKSRRIYVQCVNKDKGAVARKACTVACIGCGKCV 228 Query: 111 EACPVDAIVEGPNFEFATETR 131 + CP +AI N + + Sbjct: 229 KVCPFEAITLENNLAYIDPNK 249 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 9/65 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C C A C AI + ++D KC CG C +ACP I Sbjct: 138 CSYGCLGCGDCVAACQFDAIHMNPETGLP---------EVDEEKCTACGACAKACPKSII 188 Query: 119 VEGPN 123 P Sbjct: 189 EIRPQ 193 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 11/60 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C C +CP +AIT+E+ ID KC C C+EACP + I Sbjct: 217 CTVACIGCGKCVKVCPFEAITLENNLAY-----------IDPNKCKSCRKCEEACPQNTI 265 >gi|152990044|ref|YP_001355766.1| NADH dehydrogenase subunit G [Nitratiruptor sp. SB155-2] gi|151421905|dbj|BAF69409.1| NADH-quinone oxidoreductase, chain G [Nitratiruptor sp. SB155-2] Length = 827 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 19/114 (16%), Positives = 32/114 (28%), Gaps = 24/114 (21%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 + + +R CI C+ C +C G + + Sbjct: 121 EQHYAIRDTYRPVKKWNFIHYDSSLCIVCERCVTVCKDMIGDAALKTVPRGGDKLGKEWK 180 Query: 98 IDMIK-----------------------CIYCGLCQEACPVDAIVEGPNFEFAT 128 +M K C +CG C CPV A+V ++ + T Sbjct: 181 DEMPKDAYAMWNKLQKSIIGAVTGEELDCTWCGECISVCPVGALV-SEDYHYTT 233 >gi|121609340|ref|YP_997147.1| formate dehydrogenase subunit alpha [Verminephrobacter eiseniae EF01-2] gi|121553980|gb|ABM58129.1| formate dehydrogenase, alpha subunit [Verminephrobacter eiseniae EF01-2] Length = 959 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 22/75 (29%), Gaps = 3/75 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T SG +C+ CG C Sbjct: 161 YFSYDASKCIVCNRCVRACEETQGTFALTISGRGFAARVSAGQDQPFMESECVSCGACVN 220 Query: 112 ACPVDAIVEGPNFEF 126 CP ++ E E Sbjct: 221 VCPTASLQEKTVIEL 235 >gi|254975082|ref|ZP_05271554.1| putative iron-sulfur protein [Clostridium difficile QCD-66c26] gi|255092471|ref|ZP_05321949.1| putative iron-sulfur protein [Clostridium difficile CIP 107932] gi|255314210|ref|ZP_05355793.1| putative iron-sulfur protein [Clostridium difficile QCD-76w55] gi|255516888|ref|ZP_05384564.1| putative iron-sulfur protein [Clostridium difficile QCD-97b34] gi|255649989|ref|ZP_05396891.1| putative iron-sulfur protein [Clostridium difficile QCD-37x79] gi|260683140|ref|YP_003214425.1| putative iron-sulfur protein [Clostridium difficile CD196] gi|260686738|ref|YP_003217871.1| putative iron-sulfur protein [Clostridium difficile R20291] gi|306520065|ref|ZP_07406412.1| putative iron-sulfur protein [Clostridium difficile QCD-32g58] gi|260209303|emb|CBA62685.1| putative iron-sulfur protein [Clostridium difficile CD196] gi|260212754|emb|CBE03883.1| putative iron-sulfur protein [Clostridium difficile R20291] Length = 382 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 11/67 (16%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + CI C C+ CPA I I + ID+ KCI C C E CP AI Sbjct: 323 FQDCIKCGKCKEACPASTIEIGTKGAI-----------IDLSKCIRCYCCHELCPKKAID 371 Query: 120 EGPNFEF 126 NF F Sbjct: 372 VKRNFVF 378 >gi|88603096|ref|YP_503274.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methanospirillum hungatei JF-1] gi|88188558|gb|ABD41555.1| formylmethanofuran dehydrogenase, subunit F [Methanospirillum hungatei JF-1] Length = 388 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 3/68 (4%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 E C C +C CP++AI + R G ++ +I C C C CP +A Sbjct: 207 WDEAYCDGCNVCAEACPSEAIKVT---RTVVGQKKLGNVNIIDEDCCTCRWCAINCPTEA 263 Query: 118 IVEGPNFE 125 I FE Sbjct: 264 ITVNKIFE 271 Score = 42.4 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 32/86 (37%), Gaps = 5/86 (5%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT-IESGPRCHDGTRR 92 IN P E + + F GE C C +CPA AI P + Sbjct: 257 INCPTEAITVNKIFEGEITFHAEKCPGG----CSTCVDVCPANAIYLPTPKPAKDMKGQI 312 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAI 118 + ++ CI CG C ACP + I Sbjct: 313 EAKIAVNKDFCILCGACVNACPGEDI 338 Score = 42.0 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 29/86 (33%), Gaps = 9/86 (10%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P E + G+ L +E C C+ C CP +AIT+ Sbjct: 222 CPSEAIKVTRTVVGQKKLGNVNIIDEDCCTCRWCAINCPTEAITVNKIFEGEI------- 274 Query: 96 YDIDMIKCI-YCGLCQEACPVDAIVE 120 KC C C + CP +AI Sbjct: 275 -TFHAEKCPGGCSTCVDVCPANAIYL 299 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 1/74 (1%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR-YDIDMIKCIYC 106 R + + C C +C +CP +AI++ + G +D KC YC Sbjct: 22 RLLQQVNNLILDNDICTGCGICSEVCPEEAISVGAVGGVRRGLVDDAASIHVDETKCSYC 81 Query: 107 GLCQEACPVDAIVE 120 G+C CP A+ Sbjct: 82 GVCVIMCPFSALAL 95 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 10/86 (11%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRC-------HDGTRRTVRYDIDMIKCIYCGLC 109 E +C C +C +CP A+ ++ ID KC+ C +C Sbjct: 72 HVDETKCSYCGVCVIMCPFSALALKVDGEERLPILEKEGFPTYDKGTAIDQDKCVRCNIC 131 Query: 110 QEACPVDAI-VEGPNFEFATETRQEL 134 + CP DAI + P FE E ++ L Sbjct: 132 DDVCPRDAIDRDVPLFE--GEDKEGL 155 Score = 35.1 bits (79), Expect = 3.0, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 9/94 (9%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE---------SGPRCHD 88 E+ + + +++C+ C +C+ +CP AI + G Sbjct: 100 EERLPILEKEGFPTYDKGTAIDQDKCVRCNICDDVCPRDAIDRDVPLFEGEDKEGLAKGQ 159 Query: 89 GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + + +D KC CG+C C ++ P Sbjct: 160 AVELKIEFKVDDEKCTKCGICGNLCEAINVLHKP 193 >gi|88799770|ref|ZP_01115344.1| Ferredoxin-type protein NapF [Reinekea sp. MED297] gi|88777504|gb|EAR08705.1| Ferredoxin-type protein NapF [Reinekea sp. MED297] Length = 182 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 29/106 (27%), Gaps = 31/106 (29%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY----------- 96 RG+ CI C C C A+ ++ P + + Sbjct: 62 RGDGGFPELSFQNNACIGCGDCVEACEPGALQSDADPWPVGQWQVNDQCLPQQGVSCRSC 121 Query: 97 --------------------DIDMIKCIYCGLCQEACPVDAIVEGP 122 ++D +C CG C CP DAI P Sbjct: 122 QDACETSAIRFPMTSAVPSPELDASQCTACGACVSVCPTDAIAIQP 167 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 18/59 (30%), Gaps = 8/59 (13%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 ++C C C+ C G CI CG C EAC A+ Sbjct: 43 DQCTRCGECQVAC--------PEAIIVRGDGGFPELSFQNNACIGCGDCVEACEPGALQ 93 >gi|189500466|ref|YP_001959936.1| electron transport complex, RnfABCDGE type, C subunit [Chlorobium phaeobacteroides BS1] gi|189495907|gb|ACE04455.1| electron transport complex, RnfABCDGE type, C subunit [Chlorobium phaeobacteroides BS1] Length = 441 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 18/89 (20%), Positives = 27/89 (30%), Gaps = 3/89 (3%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 KA T++ P K ++ F + + CI C C +CP Sbjct: 331 MMGKAVYTLDVPIIKTTSGMLFINNVGIEKARE--RTCIRCGKCVDVCPQGLAPWLLA-N 387 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + + C CG C CP Sbjct: 388 VAQLREFDEIQLLSLANCTECGSCTYVCP 416 >gi|326383750|ref|ZP_08205435.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein [Gordonia neofelifaecis NRRL B-59395] gi|326197514|gb|EGD54703.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein [Gordonia neofelifaecis NRRL B-59395] Length = 506 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/45 (37%), Positives = 19/45 (42%), Gaps = 3/45 (6%) Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 I R G + ID CI CG C +ACPVDAI Sbjct: 1 MNCIHPTPEER---GFGTSDILHIDPEACIDCGACADACPVDAIF 42 >gi|308272002|emb|CBX28610.1| hypothetical protein N47_G39340 [uncultured Desulfobacterium sp.] Length = 1018 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 4/58 (6%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C +C +C +ICP A + + +I+ C CGLC +C AI Sbjct: 950 CSSCGVCVSICPYSAPSFIEETARFFPGKA----NINPALCKGCGLCVASCRSGAIRL 1003 Score = 40.5 bits (93), Expect = 0.073, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 12/79 (15%) Query: 57 PNGEERCIACKLCEAIC-------PAQAITIESGPRCHDGTRRTVRYDIDMIKCIY---- 105 +CIAC LC C +++ ++Y ID C++ Sbjct: 111 YVDMNKCIACGLCAEKCPKKVINEYDGSLSKRKAIYVKYAQAVPLKYAIDPDNCLFLTKG 170 Query: 106 -CGLCQEACPVDAIVEGPN 123 C C++ CP DAI Sbjct: 171 KCRACEKFCPADAINFDDQ 189 Score = 37.8 bits (86), Expect = 0.58, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 25/57 (43%), Gaps = 5/57 (8%) Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 ++ RY +DM KCI CGLC E CP I ++ + R+ Y K Sbjct: 97 DEGNFEVSLKQYPRY-VDMNKCIACGLCAEKCPKKVI---NEYDGSLSKRK-AIYVK 148 >gi|303247925|ref|ZP_07334192.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfovibrio fructosovorans JJ] gi|302490649|gb|EFL50552.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfovibrio fructosovorans JJ] Length = 767 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 21/70 (30%), Gaps = 10/70 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L RC CK C CP A+ + + +C CG C A Sbjct: 550 LSYPVFNFVRCTQCKRCTEECPFGALDDDEKGTPKP----------NPTRCRRCGTCMGA 599 Query: 113 CPVDAIVEGP 122 CP I Sbjct: 600 CPERVISFDN 609 >gi|288924962|ref|ZP_06418898.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Prevotella buccae D17] gi|288338152|gb|EFC76502.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Prevotella buccae D17] Length = 1193 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 26/82 (31%), Gaps = 16/82 (19%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTR------------R 92 RG A E CI C C +CP I + + Sbjct: 678 RGVAAFVPTW-ASENCIQCNKCSYVCPHACIRPFVLDENEKAGFNEPTLDVLAPKQLKGM 736 Query: 93 TVRYDIDMIKCIYCGLCQEACP 114 R ++ ++ C CG C + CP Sbjct: 737 QFRIEVSVLDCTGCGNCADVCP 758 >gi|262393720|ref|YP_003285574.1| electron transport complex protein RnfC [Vibrio sp. Ex25] gi|262337314|gb|ACY51109.1| electron transport complex protein RnfC [Vibrio sp. Ex25] Length = 916 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 12/103 (11%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C C CPA + + ++++ CI CG C CP Sbjct: 372 HQHEMECIRCSQCAEACPAS-LLPQQLQWHAKAEEYDKLEELNLKDCIECGACAFVCP-S 429 Query: 117 AIVEGPNF-----EFATETRQELYYDKERLLNNGDRWESEIVR 154 I + E T T++ ++ +L R+E + R Sbjct: 430 EIPLVQYYRQAKAEIRTRTQEAEAAERAKL-----RFEEKKAR 467 >gi|254480710|ref|ZP_05093957.1| 4Fe-4S binding domain protein [marine gamma proteobacterium HTCC2148] gi|214039293|gb|EEB79953.1| 4Fe-4S binding domain protein [marine gamma proteobacterium HTCC2148] Length = 593 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 27/95 (28%), Gaps = 20/95 (21%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV------------- 94 R + + E RCI C C ICP I+ + Sbjct: 488 RCLNCDIQTVFEEVRCIECDACVDICPTDCISFIANQEEEHLRVALTAPASNLAQDLYVS 547 Query: 95 -------RYDIDMIKCIYCGLCQEACPVDAIVEGP 122 D C++CGLC E CP A Sbjct: 548 EELPTKRVMVKDENVCLHCGLCAERCPTSAWDMQK 582 Score = 37.0 bits (84), Expect = 0.96, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 18/56 (32%), Gaps = 2/56 (3%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 E A T ++ ++CI C C + CP D I N E Sbjct: 472 EVELGFDATTGYKEAERCLNCDIQTVFE--EVRCIECDACVDICPTDCISFIANQE 525 >gi|195479863|ref|XP_002101056.1| GE17405 [Drosophila yakuba] gi|194188580|gb|EDX02164.1| GE17405 [Drosophila yakuba] Length = 1031 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 18/65 (27%), Gaps = 8/65 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP-VDA 117 ++ CI C C C + C C LC CP +D Sbjct: 949 DDDMCINCGKCYMTCA-------DSGYQAIEFDKDTHIPHVNNDCTGCTLCVSVCPIIDC 1001 Query: 118 IVEGP 122 I P Sbjct: 1002 ITMVP 1006 >gi|154705703|gb|ABS84237.1| putative dihydropyrimidine dehydrogenase [Delftia sp. I24] Length = 439 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 11/66 (16%) Query: 59 GEERCIACKLCEAICP---AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 ++ CI C C C QAIT R+++D +C+ C LC CPV Sbjct: 342 NQDSCIQCGRCHVACEDTSHQAITFSKEGGV-------RRFEVDDTECVGCNLCVSICPV 394 Query: 116 D-AIVE 120 I Sbjct: 395 PECITM 400 >gi|163748761|ref|ZP_02156013.1| Hypothetical pyruvate formate lyase activating enzyme [Shewanella benthica KT99] gi|161331535|gb|EDQ02340.1| Hypothetical pyruvate formate lyase activating enzyme [Shewanella benthica KT99] Length = 307 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 7/70 (10%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 P+ +C +C LC CPAQA+++ D CI C C +ACP Sbjct: 55 HNPHTIGQCDSCGLCIPSCPAQALSLHETDGSGLIHW-------DKDLCIECDACLQACP 107 Query: 115 VDAIVEGPNF 124 A + + Sbjct: 108 KQASPKTRQY 117 >gi|150006371|ref|YP_001301115.1| ferredoxin [Bacteroides vulgatus ATCC 8482] gi|254881723|ref|ZP_05254433.1| ferredoxin [Bacteroides sp. 4_3_47FAA] gi|294776232|ref|ZP_06741717.1| ferredoxin [Bacteroides vulgatus PC510] gi|319643688|ref|ZP_07998305.1| electron transport complex protein RnfB [Bacteroides sp. 3_1_40A] gi|149934795|gb|ABR41493.1| electron transport complex protein RnfB [Bacteroides vulgatus ATCC 8482] gi|254834516|gb|EET14825.1| ferredoxin [Bacteroides sp. 4_3_47FAA] gi|294449915|gb|EFG18430.1| ferredoxin [Bacteroides vulgatus PC510] gi|317384718|gb|EFV65680.1| electron transport complex protein RnfB [Bacteroides sp. 3_1_40A] Length = 317 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 27/76 (35%), Gaps = 8/76 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------DMIKCIYCGLCQ 110 EE+C AC C CP + I I + + CI CG C Sbjct: 172 DEEKCTACGACSKACPRKIIEIRPKGKNNRRVVVMCVNKDKGAVANKACKASCIGCGKCV 231 Query: 111 EACPVDAIVEGPNFEF 126 + CP +AI N + Sbjct: 232 KVCPFEAITLENNLAY 247 Score = 41.2 bits (95), Expect = 0.046, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 9/60 (15%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C C C AI + ++D KC CG C +ACP I P Sbjct: 145 CLGCGDCVEACQFDAIHMNPETGLP---------EVDEEKCTACGACSKACPRKIIEIRP 195 Score = 39.3 bits (90), Expect = 0.16, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 11/61 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI C C +CP +AIT+E+ ID KC C C+ CP AI Sbjct: 220 CKASCIGCGKCVKVCPFEAITLENNLAY-----------IDPAKCKSCRKCESECPKGAI 268 Query: 119 V 119 Sbjct: 269 Q 269 Score = 35.5 bits (80), Expect = 2.9, Method: Composition-based stats. Identities = 11/21 (52%), Positives = 12/21 (57%) Query: 103 CIYCGLCQEACPVDAIVEGPN 123 C+ CG C EAC DAI P Sbjct: 145 CLGCGDCVEACQFDAIHMNPE 165 >gi|148652690|ref|YP_001279783.1| electron transport complex, RnfABCDGE type subunit B [Psychrobacter sp. PRwf-1] gi|148571774|gb|ABQ93833.1| electron transport complex, RnfABCDGE type, B subunit [Psychrobacter sp. PRwf-1] Length = 275 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 23/79 (29%), Gaps = 10/79 (12%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 G R E+ CI C C CP AI + I Sbjct: 94 WPVDAHTGRPTEVRAIIREDDCIGCTKCIPACPVDAIIGTGK----------HMHTIFTD 143 Query: 102 KCIYCGLCQEACPVDAIVE 120 C C LC CPVD I Sbjct: 144 LCTGCELCLAPCPVDCIDL 162 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 17/50 (34%), Positives = 19/50 (38%) Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 + H G VR I CI C C ACPVDAI+ T Sbjct: 93 QWPVDAHTGRPTEVRAIIREDDCIGCTKCIPACPVDAIIGTGKHMHTIFT 142 >gi|50426955|ref|XP_462080.1| DEHA2G12518p [Debaryomyces hansenii CBS767] gi|49657750|emb|CAG90566.1| DEHA2G12518p [Debaryomyces hansenii] Length = 607 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 25/56 (44%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 K C+ C +++G C + T + I CI CG+C + CP DAI Sbjct: 19 KKCKQECRKACPVVKTGKLCIEVTPTSKIAFISETLCIGCGICVKKCPFDAINIIN 74 >gi|332879377|ref|ZP_08447074.1| ferredoxin [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332682797|gb|EGJ55697.1| ferredoxin [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 318 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 29/83 (34%), Gaps = 11/83 (13%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P + + + CI C C CP +AIT+ + Sbjct: 198 PKNRRMVVMCVNRDKGAVANKVCKASCIGCGKCVKTCPFEAITLNNNLAY---------- 247 Query: 97 DIDMIKCIYCGLCQEACPVDAIV 119 ID KC C C+EACP AI Sbjct: 248 -IDPEKCKLCRKCEEACPKGAIH 269 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 27/76 (35%), Gaps = 8/76 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD--------IDMIKCIYCGLCQ 110 EERC AC C CP + I + + + CI CG C Sbjct: 172 DEERCTACGACVKTCPRRVIELRPKGPKNRRMVVMCVNRDKGAVANKVCKASCIGCGKCV 231 Query: 111 EACPVDAIVEGPNFEF 126 + CP +AI N + Sbjct: 232 KTCPFEAITLNNNLAY 247 Score = 33.9 bits (76), Expect = 7.6, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 9/60 (15%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C A C A++I ++D +C CG C + CP I P Sbjct: 145 CLGGGDCVAACQFGALSINPETGLP---------EVDEERCTACGACVKTCPRRVIELRP 195 >gi|320100610|ref|YP_004176202.1| thiamine pyrophosphate TPP-binding domain-containing protein [Desulfurococcus mucosus DSM 2162] gi|319752962|gb|ADV64720.1| thiamine pyrophosphate TPP-binding domain-containing protein [Desulfurococcus mucosus DSM 2162] Length = 625 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 23/69 (33%), Gaps = 11/69 (15%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 Y +C C C A AI + G I + C CGLC C Sbjct: 566 PYTVDPGKCTGCGACIAATGCPAIFLSEGKAV-----------IAVEDCTGCGLCARYCG 614 Query: 115 VDAIVEGPN 123 +AI G + Sbjct: 615 FNAIKPGGD 623 Score = 35.5 bits (80), Expect = 2.4, Method: Composition-based stats. Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 2/34 (5%) Query: 91 RRTVRYDIDMIKCIYCGLCQEA--CPVDAIVEGP 122 RRT Y +D KC CG C A CP + EG Sbjct: 562 RRTAPYTVDPGKCTGCGACIAATGCPAIFLSEGK 595 >gi|315428121|dbj|BAJ49707.1| coenzyme F420-dependent hydrogenase beta subunit [Candidatus Caldiarchaeum subterraneum] Length = 356 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 23/67 (34%), Gaps = 10/67 (14%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 RG+ + G RC C C +CP + + CI C Sbjct: 4 RGDQVIVDGVVGTGRCSGCAACVTVCPTNVFDYVEDHPVNT----------RLNHCIECD 53 Query: 108 LCQEACP 114 LC EACP Sbjct: 54 LCVEACP 60 >gi|290968440|ref|ZP_06559979.1| hydrogenase, Fe-dependent [Megasphaera genomosp. type_1 str. 28L] gi|290781436|gb|EFD94025.1| hydrogenase, Fe-dependent [Megasphaera genomosp. type_1 str. 28L] Length = 487 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 29/84 (34%), Gaps = 12/84 (14%) Query: 46 RFRGEHALRRYPNGEERC------IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 + R + RR P E C CK C A T + D Sbjct: 5 QSRFQQLQRRVPIDEHNCSVQFDVTKCKNCTMCLRACCNTQT------IMDYYYLPSTGD 58 Query: 100 MIKCIYCGLCQEACPVDAIVEGPN 123 M CI+CG C ACP AI E + Sbjct: 59 MPICIHCGQCAAACPFGAITEVND 82 >gi|317152782|ref|YP_004120830.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfovibrio aespoeensis Aspo-2] gi|316943033|gb|ADU62084.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfovibrio aespoeensis Aspo-2] Length = 1200 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 36/106 (33%), Gaps = 28/106 (26%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQA----------------ITIESGPRCHDGTRRTV 94 A+ + CI C C +CP A + D + Sbjct: 674 VAINVPEWIADNCIQCNQCAFVCPHSALRAVLADDAELKGAPASFATLEAKGKDVKGLSF 733 Query: 95 RYDIDMIKCIYCGLCQEACPV--DAIVEG----------PNFEFAT 128 R ++++ C+ CG C + CP A+V PNFEF+ Sbjct: 734 RLQVNVLDCLGCGNCADICPSKDKALVMQPIATQTGAQVPNFEFSE 779 >gi|255012541|ref|ZP_05284667.1| putative dehydrogenase [Bacteroides sp. 2_1_7] gi|298374570|ref|ZP_06984528.1| dehydrogenase [Bacteroides sp. 3_1_19] gi|298268938|gb|EFI10593.1| dehydrogenase [Bacteroides sp. 3_1_19] Length = 605 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 6/56 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + +C C C +C +AIT ++ ++D KC CGLC++ CP Sbjct: 6 DKSKCCGCNACGDVCTHKAITFKTDIEGFWYP------EVDKNKCTDCGLCEKVCP 55 >gi|242399359|ref|YP_002994783.1| 2-ketoisovalerate:ferredoxin oxidoreductase (VOR) subunit delta [Thermococcus sibiricus MM 739] gi|242265752|gb|ACS90434.1| 2-ketoisovalerate:ferredoxin oxidoreductase (VOR) subunit delta [Thermococcus sibiricus MM 739] Length = 105 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 31/87 (35%), Gaps = 10/87 (11%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P G+T F G+ E +CI C +C CP AI I+ Sbjct: 27 PITLGTTLSNFTGDWRNFMPVVDESKCIKCYICWKFCPEPAIYIKEDGYVA--------- 77 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPN 123 +D C CG+C CP AI Sbjct: 78 -VDYDYCKGCGICANECPTKAISMVRE 103 >gi|255655546|ref|ZP_05400955.1| putative iron-sulfur protein [Clostridium difficile QCD-23m63] gi|296451536|ref|ZP_06893271.1| probable iron-sulfur protein [Clostridium difficile NAP08] gi|296880115|ref|ZP_06904082.1| probable iron-sulfur protein [Clostridium difficile NAP07] gi|296259601|gb|EFH06461.1| probable iron-sulfur protein [Clostridium difficile NAP08] gi|296428840|gb|EFH14720.1| probable iron-sulfur protein [Clostridium difficile NAP07] Length = 382 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 11/67 (16%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + CI C C+ CPA I I + ID+ KCI C C E CP AI Sbjct: 323 FQDCIKCGKCKEACPAATIEIGTKGAI-----------IDLSKCIRCYCCHELCPKKAID 371 Query: 120 EGPNFEF 126 NF F Sbjct: 372 VKRNFVF 378 >gi|255101849|ref|ZP_05330826.1| pyruvate-flavodoxin oxidoreductase [Clostridium difficile QCD-63q42] gi|255307718|ref|ZP_05351889.1| pyruvate-flavodoxin oxidoreductase [Clostridium difficile ATCC 43255] Length = 1179 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 27/81 (33%), Gaps = 18/81 (22%) Query: 61 ERCIACKLCEAICPAQAI-----TIESGPRCHDGTRRTV-----------RYDIDMIKCI 104 + CI C C ICP I T E +G R + + C Sbjct: 687 DNCIQCNQCSFICPHSCIRPVLVTEEELANAPEGFEAKKALGKGLEGLKYRMQLSPLDCT 746 Query: 105 YCGLCQEACP--VDAIVEGPN 123 CG C + CP A+V P Sbjct: 747 GCGNCADICPAKEKALVMKPI 767 >gi|219851375|ref|YP_002465807.1| aminoglycoside phosphotransferase-like protein [Methanosphaerula palustris E1-9c] gi|219545634|gb|ACL16084.1| aminoglycoside phosphotransferase-like protein [Methanosphaerula palustris E1-9c] Length = 437 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 28/112 (25%), Positives = 39/112 (34%), Gaps = 22/112 (19%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 F +S FL + + ++ PF + P + LRR C Sbjct: 340 FSLTLSTGFL--VFAGLLIISAFIYRPVCRGLCPFGLIFSIPSHFSRYRLRR----TGSC 393 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 I CK CE +CPAQ ++ R C CG C + CPV Sbjct: 394 ITCKKCEKVCPAQVAGRDASRRE----------------CYLCGRCSDVCPV 429 >gi|194445567|ref|YP_002041785.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194404230|gb|ACF64452.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 287 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 26/78 (33%), Gaps = 12/78 (15%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C C C CP I + I ++C CG C CP A+ Sbjct: 190 PQECRMCGACWRSCPENVIQFDDN-----------TLTIVAVRCTGCGGCAAVCPHQALR 238 Query: 120 EGPNFEFATETRQELYYD 137 + E A+ TR + Sbjct: 239 LRFDVEPAS-TRHSAVHT 255 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 11/50 (22%) Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C +CPAQA ++ G ID +CI CG C CPVDAI Sbjct: 29 CADVCPAQAFSLAQGQVS-----------IDTTRCIACGDCLFVCPVDAI 67 >gi|158634528|gb|ABW76116.1| Fe-hydrogenase 1 [Trimastix pyriformis] Length = 439 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 6/66 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV------RYDIDMIKCIYCGLCQEA 112 + C+ C C+ +CP AI + P + +ID KCI+CG CQ Sbjct: 149 DPDLCVRCGACQKVCPYHAIVKLAVPCEEACPVGAIAKGPSGHAEIDWEKCIHCGQCQLH 208 Query: 113 CPVDAI 118 CP ++ Sbjct: 209 CPFSSV 214 Score = 42.8 bits (99), Expect = 0.018, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 5/63 (7%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTV-----RYDIDMIKCIYCGLCQEACPV 115 E C C + P ++ + + ID C+ CG CQ+ CP Sbjct: 106 ESCRNCTPAAYFVTNACQGCVARPCMSTCPKKAISRVDGQAKIDPDLCVRCGACQKVCPY 165 Query: 116 DAI 118 AI Sbjct: 166 HAI 168 >gi|124485064|ref|YP_001029680.1| hypothetical protein Mlab_0237 [Methanocorpusculum labreanum Z] gi|124362605|gb|ABN06413.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Methanocorpusculum labreanum Z] Length = 93 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 23/71 (32%), Gaps = 6/71 (8%) Query: 56 YPNGEERCIACKLCEAICPAQA------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 ERC C C CP A + + D+ C CG+C Sbjct: 5 MHINMERCTGCNNCVVACPVNALELNTVDPATTDKIYLVVDGKAKILDVKHELCAGCGVC 64 Query: 110 QEACPVDAIVE 120 EACP + I Sbjct: 65 VEACPYNVIRL 75 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 2/50 (4%) Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD-KERLLNN 144 I+M +C C C ACPV+A+ + AT + L D K ++L+ Sbjct: 5 MHINMERCTGCNNCVVACPVNALEL-NTVDPATTDKIYLVVDGKAKILDV 53 >gi|46578913|ref|YP_009721.1| iron-sulfur cluster-binding protein [Desulfovibrio vulgaris str. Hildenborough] gi|46448325|gb|AAS94980.1| iron-sulfur cluster-binding protein, putative [Desulfovibrio vulgaris str. Hildenborough] Length = 501 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 38/124 (30%), Gaps = 37/124 (29%) Query: 58 NGEERCIACKLCEAICPAQAIT-----------------------IESGPRCHDGTRRTV 94 + C C LC CP A+ E+ + Sbjct: 338 CDADACTGCGLCVRACPVDALHVVRKDGQRTASNETVDARGDVPDDEAASSTARRGKARR 397 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVR 154 R ++D C+ CG+C CP A+ E R + E D +E I++ Sbjct: 398 RLEVDTSVCLGCGVCALRCPTGALRL--------EERPARVFHPE------DSFERVILQ 443 Query: 155 NIVT 158 ++ Sbjct: 444 SLER 447 Score = 37.8 bits (86), Expect = 0.46, Method: Composition-based stats. Identities = 12/23 (52%), Positives = 13/23 (56%) Query: 97 DIDMIKCIYCGLCQEACPVDAIV 119 D C CGLC ACPVDA+ Sbjct: 337 TCDADACTGCGLCVRACPVDALH 359 >gi|302390736|ref|YP_003826557.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermosediminibacter oceani DSM 16646] gi|302201364|gb|ADL08934.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermosediminibacter oceani DSM 16646] Length = 383 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 31/103 (30%), Gaps = 13/103 (12%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 F ++ + K E + + RCI C C +CP Sbjct: 154 IGSGFGGAIKNLAMGCISCKDHHGKAERGRIHFYEG--KHLEWIKARCIRCGQCVDVCPH 211 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +++ + ID C+ CG C CP A+ Sbjct: 212 KSLQLVDD-----------SIVIDKTVCVKCGRCARVCPEKAL 243 Score = 41.6 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 13/61 (21%), Positives = 19/61 (31%), Gaps = 10/61 (16%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI+CK I G +CI CG C + CP ++ Sbjct: 169 CISCKDHHGKAERGRIHFYEGKHLEW----------IKARCIRCGQCVDVCPHKSLQLVD 218 Query: 123 N 123 + Sbjct: 219 D 219 >gi|326201720|ref|ZP_08191591.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Clostridium papyrosolvens DSM 2782] gi|325988320|gb|EGD49145.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Clostridium papyrosolvens DSM 2782] Length = 597 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 11/58 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C CK C AI+ G +I+ C CGLC CP +AI Sbjct: 545 DNCKNCKKCITDIGCPAISFIDGKV-----------NIEPSLCYGCGLCTNVCPFNAI 591 >gi|256839019|ref|ZP_05544529.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256739938|gb|EEU53262.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 605 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 6/56 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + +C C C +C +AIT ++ ++D KC CGLC++ CP Sbjct: 6 DKSKCCGCNACGDVCTHKAITFKTDIEGFWYP------EVDKNKCTDCGLCEKVCP 55 >gi|254503333|ref|ZP_05115484.1| 4Fe-4S binding domain protein [Labrenzia alexandrii DFL-11] gi|222439404|gb|EEE46083.1| 4Fe-4S binding domain protein [Labrenzia alexandrii DFL-11] Length = 652 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 13/96 (13%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 T+N P E+ C C C ++CP+ A+ Sbjct: 480 TLNAPDVLLDLPAGAPYGAV----AMNEDACTLCLSCVSLCPSGALKENPD--------- 526 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 + C+ CG+C CP A+ P + Sbjct: 527 QPQLRFQEDACLQCGICTNICPESALSLVPQLNLSD 562 Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 33/99 (33%), Gaps = 17/99 (17%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 C C +CP AIT ID + C CG+C ACP A+ Sbjct: 280 TGCNRCLDLCPTGAITPAGD-----------HITIDPMVCAGCGMCSAACPSGAVSYDAP 328 Query: 124 FEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPY 162 R E L + +E R +V D+ Y Sbjct: 329 TPQHVFKR------IETLATTWRKAANEPPRLLVHDAAY 361 >gi|134093636|ref|YP_001098711.1| NAD dependent formate dehydrogenase subunit alpha Fdh1A [Herminiimonas arsenicoxydans] gi|133737539|emb|CAL60582.1| Formate dehydrogenase, alpha subunit [Herminiimonas arsenicoxydans] Length = 946 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 5/65 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID----MIKCIYCGLCQEACP 114 + CI C C C + + G + +D+D C+ CG C +ACP Sbjct: 152 NLDACIQCTRCVRACRDE-QENDVIGLAFRGDHAKIVFDMDDPMGASTCVACGECVQACP 210 Query: 115 VDAIV 119 A++ Sbjct: 211 TGALM 215 >gi|150399312|ref|YP_001323079.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanococcus vannielii SB] gi|150012015|gb|ABR54467.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus vannielii SB] Length = 80 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 8/69 (11%) Query: 60 EERCIACKLCEAICPAQAITIE--------SGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 E+C C C CP A + S + V ++ C CG C E Sbjct: 8 PEKCHGCGNCVVACPVNAQDPDVSGGKGPSSDEKLIMRVENGVVSIVNNSLCGGCGACIE 67 Query: 112 ACPVDAIVE 120 ACPVDAI Sbjct: 68 ACPVDAIKL 76 Score = 34.3 bits (77), Expect = 6.2, Method: Composition-based stats. Identities = 10/25 (40%), Positives = 14/25 (56%) Query: 93 TVRYDIDMIKCIYCGLCQEACPVDA 117 + ++ KC CG C ACPV+A Sbjct: 1 MYKLEVYPEKCHGCGNCVVACPVNA 25 >gi|158319966|ref|YP_001512473.1| hydrogenase, Fe-only [Alkaliphilus oremlandii OhILAs] gi|158140165|gb|ABW18477.1| hydrogenase, Fe-only [Alkaliphilus oremlandii OhILAs] Length = 578 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 7/85 (8%) Query: 59 GEERCIACKLCEAIC-PAQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115 E+CI C C + C Q + T Y + C CG C ACPV Sbjct: 140 DPEKCILCGRCISTCSKVQEVHAIGFIERGFDTTVAPAYAKSLDDVFCTNCGQCITACPV 199 Query: 116 DAIVEGPNFEFATETRQELYYDKER 140 A+ E N + + YDKE+ Sbjct: 200 GALYEKENI----KDVWKAIYDKEK 220 >gi|52549060|gb|AAU82909.1| MinD superfamily P-loop ATPase [uncultured archaeon GZfos23H9] Length = 291 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 10/62 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C CE C AI Y ++ +C CG C CP +A+ Sbjct: 66 DKTLCSECGTCEETCRFNAIVSTEE----------SGYAVNPARCEGCGACVFTCPQEAV 115 Query: 119 VE 120 Sbjct: 116 TL 117 >gi|84488976|ref|YP_447208.1| ferredoxin [Methanosphaera stadtmanae DSM 3091] gi|84372295|gb|ABC56565.1| ferredoxin [Methanosphaera stadtmanae DSM 3091] Length = 59 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 24/61 (39%), Positives = 29/61 (47%), Gaps = 12/61 (19%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C+AC LC CP AI + Y ID KC+ CG+C EACP AI Sbjct: 9 NDNCVACGLCVNACPIDAIAEGN------------PYVIDEEKCVGCGVCAEACPTQAIE 56 Query: 120 E 120 E Sbjct: 57 E 57 >gi|33151622|ref|NP_872975.1| electron transport complex protein RnfB [Haemophilus ducreyi 35000HP] gi|71153696|sp|Q7VNT5|RNFB_HAEDU RecName: Full=Electron transport complex protein rnfB gi|33147843|gb|AAP95364.1| putative ferredoxin II, iron sulfur protein [Haemophilus ducreyi 35000HP] Length = 207 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 21/62 (33%), Gaps = 10/62 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ CI C C CP AI + + + C C LC CP + I Sbjct: 112 HEDMCIGCTKCIQACPVDAIIGTNK----------AMHTVVADLCTGCELCVAPCPTNCI 161 Query: 119 VE 120 Sbjct: 162 EM 163 Score = 37.8 bits (86), Expect = 0.50, Method: Composition-based stats. Identities = 12/25 (48%), Positives = 14/25 (56%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 I CI C C +ACPVDAI+ Sbjct: 111 IHEDMCIGCTKCIQACPVDAIIGTN 135 >gi|89896185|ref|YP_519672.1| hypothetical protein DSY3439 [Desulfitobacterium hafniense Y51] gi|219668025|ref|YP_002458460.1| cobyrinic acid ac-diamide synthase [Desulfitobacterium hafniense DCB-2] gi|89335633|dbj|BAE85228.1| hypothetical protein [Desulfitobacterium hafniense Y51] gi|219538285|gb|ACL20024.1| Cobyrinic acid ac-diamide synthase [Desulfitobacterium hafniense DCB-2] Length = 287 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 26/73 (35%), Gaps = 12/73 (16%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 + L + E C C C C +AI+ Y +D C CG+C Sbjct: 56 YYGLPKAQIDPELCSQCDQCRQNCRFEAIS------------AGSTYRVDPFACEGCGVC 103 Query: 110 QEACPVDAIVEGP 122 Q CP AI P Sbjct: 104 QALCPAGAITLKP 116 >gi|289596653|ref|YP_003483349.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Aciduliprofundum boonei T469] gi|289534440|gb|ADD08787.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Aciduliprofundum boonei T469] Length = 848 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 21/64 (32%), Gaps = 9/64 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RC C +C C A A I+ + C+ C C ACP A Sbjct: 779 NPRRCAGCGICVDACFAGARYIDEEDHIA---------KVRTELCVGCAACANACPSGAA 829 Query: 119 VEGP 122 V P Sbjct: 830 VVMP 833 Score = 34.7 bits (78), Expect = 4.0, Method: Composition-based stats. Identities = 13/40 (32%), Positives = 16/40 (40%) Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E GP + ++ KCI C LC E C V I Sbjct: 82 EGGPGNFKARFKHRPQSVNEFKCIGCDLCHEKCDVKFIPM 121 >gi|289596652|ref|YP_003483348.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Aciduliprofundum boonei T469] gi|289534439|gb|ADD08786.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Aciduliprofundum boonei T469] Length = 1105 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 21/61 (34%), Gaps = 9/61 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C C C+ C AITI+ ++ C CG C CP AI Sbjct: 1034 DTEICAGCGRCKDQCAYGAITIDPVRHVAM---------VNEALCEGCGACSANCPTTAI 1084 Query: 119 V 119 Sbjct: 1085 Q 1085 Score = 37.8 bits (86), Expect = 0.47, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 3/41 (7%) Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 + ID KC CG C + CP +F+ TR+ Sbjct: 235 KRKSPFIDWDKCTGCGECAKVCPTV---LPSDFDLKMATRK 272 >gi|269792085|ref|YP_003316989.1| NADH dehydrogenase (quinone) [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099720|gb|ACZ18707.1| NADH dehydrogenase (quinone) [Thermanaerovibrio acidaminovorans DSM 6589] Length = 620 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 37/100 (37%), Gaps = 16/100 (16%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 LR+F + + + + RG R + C++C C +CP AI + Sbjct: 532 TLRHFMEEY--REHQDQGFCRAGVCRGMFVARVEAD---LCVSCGACAKVCPFDAIHRDP 586 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + R C CG C + CP+ A++ P Sbjct: 587 SGKFAVDRR-----------CEGCGACLDVCPMGALLPSP 615 Score = 41.6 bits (96), Expect = 0.036, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 23/53 (43%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 + G R ++ C+ CG C + CP DAI P+ +FA + R Sbjct: 543 HQDQGFCRAGVCRGMFVARVEADLCVSCGACAKVCPFDAIHRDPSGKFAVDRR 595 >gi|220919395|ref|YP_002494699.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Anaeromyxobacter dehalogenans 2CP-1] gi|219957249|gb|ACL67633.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Anaeromyxobacter dehalogenans 2CP-1] Length = 632 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 9/59 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 C C +C A CP A+ I+ + + + C CG C ACP A Sbjct: 561 DAALCGGCGMCVAACPFGAMVIDGAD---------GKATVLAVDCRGCGTCAAACPTGA 610 Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 19/80 (23%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI-------------YCGLCQEA 112 C C +C A + P + R+ + + C+ C C A Sbjct: 245 CLGCAEVCGAACPVEVADPSGGEPARKAIH--LPYAGCLPHAAVVDRAACPPGCAACAGA 302 Query: 113 CPVDAIVEGPNFEFATETRQ 132 CP A+ A +R+ Sbjct: 303 CPFGAVRLDD----APRSRE 318 Score = 34.3 bits (77), Expect = 5.9, Method: Composition-based stats. Identities = 9/22 (40%), Positives = 13/22 (59%) Query: 97 DIDMIKCIYCGLCQEACPVDAI 118 ++D C CG+C ACP A+ Sbjct: 559 EVDAALCGGCGMCVAACPFGAM 580 >gi|163736157|ref|ZP_02143576.1| dihydroorotate dehydrogenase family protein [Phaeobacter gallaeciensis BS107] gi|161390027|gb|EDQ14377.1| dihydroorotate dehydrogenase family protein [Phaeobacter gallaeciensis BS107] Length = 434 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 8/76 (10%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI C C A C E + + +C+ Sbjct: 330 QYLDLNYIAKAKINQDDCIKCGRCFAAC-------EDTSHQAIAMSEDRVFTVKDDECVA 382 Query: 106 CGLCQEACPVD-AIVE 120 C LC CPV+ I Sbjct: 383 CNLCVNVCPVEGCITM 398 >gi|288941583|ref|YP_003443823.1| NADH:ubiquinone oxidoreductase subunit G [Allochromatium vinosum DSM 180] gi|62632271|gb|AAX89150.1| HoxU [Allochromatium vinosum] gi|288896955|gb|ADC62791.1| NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding protein [Allochromatium vinosum DSM 180] Length = 243 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 29/90 (32%), Gaps = 8/90 (8%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGT 90 + P+ + + + RCI C C +C A T + R D Sbjct: 131 HVRLPYRQAPYPVDS----SHEMFRLDHNRCILCTRCVRVCDEIEGAHTWDVMGRGSDCR 186 Query: 91 RR--TVRYDIDMIKCIYCGLCQEACPVDAI 118 R + C CG C + CP A+ Sbjct: 187 VITDMARPWGESETCTSCGKCVQVCPTGAL 216 >gi|21226157|ref|NP_632079.1| tungsten formylmethanofuran dehydrogenase subunit F [Methanosarcina mazei Go1] gi|20904384|gb|AAM29751.1| tungsten formylmethanofuran dehydrogenase subunit F [Methanosarcina mazei Go1] Length = 500 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 6/77 (7%) Query: 59 GEERCIACKLCEAICPAQAITIES--GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E+C C++C +CP AI+ E+ + + KC+ C LC+ ACP D Sbjct: 140 DLEKCTFCRMCSNLCPVHAISFEAVGEVPDEKQYPKYDTFVNINEKCLPCLLCEGACPQD 199 Query: 117 AIVEGPNFEFATETRQE 133 AI EF ++E Sbjct: 200 AI----EVEFTFPKKEE 212 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 26/86 (30%), Positives = 36/86 (41%), Gaps = 5/86 (5%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L+ +RC C +C ICP +A+ + G +D+ KC +C +C Sbjct: 95 LKILDYDYKRCNGCGICAEICPTKALEMGPLHEIATGLDAPAVM-MDLEKCTFCRMCSNL 153 Query: 113 CPVDAIVEGPNFEFATETRQELYYDK 138 CPV AI FE E E Y K Sbjct: 154 CPVHAIS----FEAVGEVPDEKQYPK 175 Score = 40.9 bits (94), Expect = 0.065, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 32/87 (36%), Gaps = 7/87 (8%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T E GE + E+C C +C C A+ + D Sbjct: 205 FTFPKKEEIAPFKEGVEGEIEI-----DLEKCNFCGICAKFC--DAVILLEREPTPDNPV 257 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAI 118 + +D +C YC LCQ+ CP +AI Sbjct: 258 PFEQILVDTDRCDYCVLCQDICPEEAI 284 Score = 40.5 bits (93), Expect = 0.088, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 35/87 (40%), Gaps = 4/87 (4%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E+ T + + RC C LC+ ICP +AI G R + + + Sbjct: 248 EREPTPDNPVPFEQILVDTD---RCDYCVLCQDICPEEAIK-VKGERPCEAPEVGGKVKV 303 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFE 125 D +KC C CQ CP +A+ E Sbjct: 304 DDLKCTQCARCQAVCPYEAVDLQKPME 330 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 6/83 (7%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P+E G+ +L E C+ C +CP+ + + P Sbjct: 318 CPYEAVDLQKPMEGKLSLIEVNLKECDPQGCRGCFNVCPSDLWYVPTDPEDPRKIAFAEE 377 Query: 96 YDIDMIKCIYCGLCQEACPVDAI 118 Y C+YCG C +AC +DAI Sbjct: 378 Y------CMYCGACVKACHLDAI 394 Score = 38.5 bits (88), Expect = 0.30, Method: Composition-based stats. Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 5/81 (6%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE-----SGPRCHDGTRR 92 FE P + + N E+C+ C LCE CP AI +E Sbjct: 161 FEAVGEVPDEKQYPKYDTFVNINEKCLPCLLCEGACPQDAIEVEFTFPKKEEIAPFKEGV 220 Query: 93 TVRYDIDMIKCIYCGLCQEAC 113 +ID+ KC +CG+C + C Sbjct: 221 EGEIEIDLEKCNFCGICAKFC 241 >gi|50288565|ref|XP_446712.1| hypothetical protein [Candida glabrata CBS 138] gi|49526020|emb|CAG59639.1| unnamed protein product [Candida glabrata] Length = 607 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 3/68 (4%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP---N 123 K C C +++G C + T + I + CI CG+C + CP DAI N Sbjct: 19 KKCRQECKRSCPVVKTGKLCIEVTPTSKIAFISEVLCIGCGICVKKCPFDAITIINLPTN 78 Query: 124 FEFATETR 131 E R Sbjct: 79 LESHVTHR 86 >gi|15669492|ref|NP_248302.1| ferredoxin [Methanocaldococcus jannaschii DSM 2661] gi|48474331|sp|Q58698|Y1302_METJA RecName: Full=Uncharacterized polyferredoxin-like protein MJ1302 gi|1591941|gb|AAB99311.1| photosystem I iron-sulfur center 1 isolog [Methanocaldococcus jannaschii DSM 2661] Length = 168 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 2/59 (3%) Query: 63 CIACKLCEAICPAQAITIESGP--RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 CI C+ C +CP +AI + + D + I+ KC+YC C + CPV ++ Sbjct: 58 CIGCEGCANVCPTKAIEMIPIEPVKITDNYVKDKIPKINPEKCVYCLYCHDFCPVFSVF 116 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 9/27 (33%), Positives = 10/27 (37%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPN 123 + CI C C CP AI P Sbjct: 52 TVIEELCIGCEGCANVCPTKAIEMIPI 78 >gi|116750219|ref|YP_846906.1| pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta [Syntrophobacter fumaroxidans MPOB] gi|116699283|gb|ABK18471.1| pyruvate ferredoxin oxidoreductase, delta subunit [Syntrophobacter fumaroxidans MPOB] Length = 97 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 10/65 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++C C C CP + ++ Y + C CG+C + CPVDAI Sbjct: 41 DRKKCTKCGQCYIFCPDMVYSKDAEG----------YYVQNYYYCKGCGICAKECPVDAI 90 Query: 119 VEGPN 123 Sbjct: 91 TMHQE 95 >gi|329123232|ref|ZP_08251800.1| electron transport complex protein RnfC [Haemophilus aegyptius ATCC 11116] gi|327471441|gb|EGF16889.1| electron transport complex protein RnfC [Haemophilus aegyptius ATCC 11116] Length = 707 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 12/101 (11%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C CP + + + + CI CG+C CP I Sbjct: 376 QACIRCSSCSDACPVN-LMPQQLYWFARSEDHKKSEEYALKDCIECGICAYVCPSH-IPL 433 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161 F RQE K ++ ++ + I ++ Sbjct: 434 IQYF------RQE----KAKIWQIKEKQKKSDEAKIRFEAK 464 >gi|319776069|ref|YP_004138557.1| NADH:ubiquinone oxidoreductase subunit RnfC [Haemophilus influenzae F3047] gi|317450660|emb|CBY86880.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Haemophilus influenzae F3047] Length = 651 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 12/101 (11%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C CP + + + + CI CG+C CP I Sbjct: 376 QACIRCSSCSDACPVN-LMPQQLYWFARSEDHKKSEEYALKDCIECGICAYVCPSH-IPL 433 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161 F RQE K ++ ++ + I ++ Sbjct: 434 IQYF------RQE----KAKIWQIKEKQKKSDEAKIRFEAK 464 >gi|319896878|ref|YP_004135073.1| NADH:ubiquinone oxidoreductase, subunit rnfc [Haemophilus influenzae F3031] gi|317432382|emb|CBY80737.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Haemophilus influenzae F3031] Length = 650 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 12/101 (11%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C CP + + + + CI CG+C CP I Sbjct: 376 QACIRCSSCSDACPVN-LMPQQLYWFARSEDHKKSEEYALKDCIECGICAYVCPSH-IPL 433 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161 F RQE K ++ ++ + I ++ Sbjct: 434 IQYF------RQE----KAKIWQIKEKQKKSDEAKIRFEAK 464 >gi|310658269|ref|YP_003935990.1| hypothetical protein CLOST_0962 [Clostridium sticklandii DSM 519] gi|308825047|emb|CBH21085.1| conserved protein of unknown function [Clostridium sticklandii] Length = 378 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 11/61 (18%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 +CI+C C+ CPA I++ +++ CI C C E CP DA+ Sbjct: 319 HSKCISCGHCKRNCPANVISMVDNKPV-----------VNLKDCISCFCCHEVCPADAVN 367 Query: 120 E 120 Sbjct: 368 I 368 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 15/33 (45%) Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + + + KCI CG C+ CP + I N Sbjct: 310 KLKAKPEFVHSKCISCGHCKRNCPANVISMVDN 342 >gi|307260625|ref|ZP_07542317.1| Electron transport complex protein rnfC [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869702|gb|EFN01487.1| Electron transport complex protein rnfC [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 770 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 34/107 (31%), Gaps = 3/107 (2%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E CI C C CP + + + + CI CG+C CP Sbjct: 379 PEPERSCIRCSSCSDACPVG-LLPQQLYWYARSEDHDKSKEYHLDACIECGVCAYVCP-S 436 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 I F E+ ++ R+E+ R + + R Sbjct: 437 YIPLIQYFRQEKAKITEIEEKAKKAEEAKARFEAREAR-LQKEKDAR 482 >gi|303239632|ref|ZP_07326157.1| hydrogenase large subunit domain protein [Acetivibrio cellulolyticus CD2] gi|302592803|gb|EFL62526.1| hydrogenase large subunit domain protein [Acetivibrio cellulolyticus CD2] Length = 446 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 12/69 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 EE+C C C CP +AI + G I +CI CG C CP A Sbjct: 11 DEEKCKGCTNCIKRCPTEAIRVRKGKA-----------RIIAERCIDCGECIRVCPYHAK 59 Query: 119 V-EGPNFEF 126 F+ Sbjct: 60 KAITDQFDI 68 >gi|301170440|emb|CBW30047.1| fused predicted 4Fe-4S ferredoxin-type protein/conserved protein [Haemophilus influenzae 10810] Length = 706 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 12/101 (11%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C CP + + + + CI CG+C CP I Sbjct: 376 QACIRCSSCSDACPVN-LMPQQLYWFARSEDHKKSEEYALKDCIECGICAYVCPSH-IPL 433 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161 F RQE K ++ ++ + I ++ Sbjct: 434 IQYF------RQE----KAKIWQIKEKQKKSDEAKIRFEAK 464 >gi|291458640|ref|ZP_06598030.1| conserved domain protein [Oribacterium sp. oral taxon 078 str. F0262] gi|291419173|gb|EFE92892.1| conserved domain protein [Oribacterium sp. oral taxon 078 str. F0262] Length = 56 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 11/64 (17%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C++C C + CP QAI+ Y +D CI CG C+E CP Sbjct: 1 MAHVISDECVSCGACASACPVQAISEGESK-----------YVVDADSCIDCGACEEVCP 49 Query: 115 VDAI 118 AI Sbjct: 50 TGAI 53 >gi|288560087|ref|YP_003423573.1| ferredoxin [Methanobrevibacter ruminantium M1] gi|288542797|gb|ADC46681.1| ferredoxin [Methanobrevibacter ruminantium M1] Length = 324 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 23/60 (38%), Positives = 36/60 (60%), Gaps = 5/60 (8%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ CI C++C ICPA AI++ + + ++D KC+YCG+C+ ACP +AI Sbjct: 140 NEDDCIYCQVCAEICPAGAISLTASD-----GKILDTIEVDEDKCVYCGVCKRACPQEAI 194 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 21/78 (26%), Positives = 29/78 (37%), Gaps = 3/78 (3%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRC---HDGTRRTVRYDIDMIKCIYCG 107 L E++C+ C +C+ CP +AI CI CG Sbjct: 167 KILDTIEVDEDKCVYCGVCKRACPQEAIKTVCSTCMYSDEIEKIAITGDIFITEDCINCG 226 Query: 108 LCQEACPVDAIVEGPNFE 125 C+E CPVDA F+ Sbjct: 227 WCKEICPVDAAEVTKPFD 244 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 4/80 (5%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC----HDGTRRTVRYDIDMIKC 103 RG+ ++ C+ C LC CP A+ + G + + + T I C Sbjct: 46 RGQAEGNNIVLDQDTCVLCGLCSFACPFGALEFDIGGQDASELPNYPKWTHESSISQDDC 105 Query: 104 IYCGLCQEACPVDAIVEGPN 123 +CG C ACP DAI+ Sbjct: 106 EFCGRCYTACPQDAILFKRE 125 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 22/62 (35%), Gaps = 1/62 (1%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 ++ C C C CP AI I+ CIYC +C E CP AI Sbjct: 102 QDDCEFCGRCYTACPQDAILF-KRELPDRNALLKGEISINEDDCIYCQVCAEICPAGAIS 160 Query: 120 EG 121 Sbjct: 161 LT 162 Score = 41.2 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 4/87 (4%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R R+ + C+AC +C CP ++ I G +D C+ CG Sbjct: 6 RDGAESRKLSYDNKVCLACGICADTCPTDSLAIADVLAIARGQAEGNNIVLDQDTCVLCG 65 Query: 108 LCQEACPVDAIVEGPNFEFATETRQEL 134 LC ACP A+ F+ + EL Sbjct: 66 LCSFACPFGAL----EFDIGGQDASEL 88 Score = 38.5 bits (88), Expect = 0.33, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 26/75 (34%), Gaps = 8/75 (10%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 + A+ E CI C C+ ICP A + + C+ CG Sbjct: 208 EKIAITGDIFITEDCINCGWCKEICPVDAAEVTKPFDGEIS--------VTEEDCVACGS 259 Query: 109 CQEACPVDAIVEGPN 123 C + C +A+ N Sbjct: 260 CIDICSCNAVSLQDN 274 Score = 34.3 bits (77), Expect = 5.6, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 27/87 (31%), Gaps = 11/87 (12%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 + E + EE C+AC C IC A++++ Sbjct: 223 INCGWCKEICPVDAAEVTKPFDGEISVTEEDCVACGSCIDICSCNAVSLQDNVAV----- 277 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C+ CG C CP + I Sbjct: 278 ------FNQDYCVLCGACARLCPQERI 298 >gi|260581278|ref|ZP_05849096.1| electron transport complex protein rnfC [Haemophilus influenzae RdAW] gi|260092105|gb|EEW76050.1| electron transport complex protein rnfC [Haemophilus influenzae RdAW] Length = 807 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 12/101 (11%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C CP + + + + CI CG+C CP I Sbjct: 376 QACIRCSSCSDACPVN-LMPQQLYWFARSEDHKKSEEYALKDCIECGICAYVCPSH-IPL 433 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161 F RQE K ++ ++ + I ++ Sbjct: 434 IQYF------RQE----KAKIWQIKEKQKKSDEAKIRFEAK 464 >gi|218260395|ref|ZP_03475734.1| hypothetical protein PRABACTJOHN_01397 [Parabacteroides johnsonii DSM 18315] gi|218224549|gb|EEC97199.1| hypothetical protein PRABACTJOHN_01397 [Parabacteroides johnsonii DSM 18315] Length = 184 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 28/81 (34%), Positives = 35/81 (43%), Gaps = 13/81 (16%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 EK S + R L +Y E+C C LC +CP AIT + + V + I Sbjct: 115 EKRCPSHQCR---ELTQYFINPEKCKGCTLCARMCPVNAITGD----------KKVPHVI 161 Query: 99 DMIKCIYCGLCQEACPVDAIV 119 D CI CG C E C AI Sbjct: 162 DPQTCIRCGSCIERCKFGAIY 182 >gi|222111967|ref|YP_002554231.1| formate dehydrogenase subunit alpha [Acidovorax ebreus TPSY] gi|221731411|gb|ACM34231.1| formate dehydrogenase, alpha subunit [Acidovorax ebreus TPSY] Length = 961 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 5/60 (8%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACPVDAI 118 CI C C C + + G + +D + C+ CG C +ACP A+ Sbjct: 181 CIQCNRCVRACREE-QVNDVIGYALRGADSKIVFDLDDPMGASTCVACGECVQACPTGAL 239 >gi|190149438|ref|YP_001967963.1| electron transport complex protein RnfC [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307262757|ref|ZP_07544384.1| Electron transport complex protein rnfC [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189914569|gb|ACE60821.1| electron transport complex protein RnfC [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306871902|gb|EFN03619.1| Electron transport complex protein rnfC [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 770 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 34/107 (31%), Gaps = 3/107 (2%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E CI C C CP + + + + CI CG+C CP Sbjct: 379 PEPERSCIRCSSCSDACPVG-LLPQQLYWYARSEDHDKSKEYHLDACIECGVCAYVCP-S 436 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 I F E+ ++ R+E+ R + + R Sbjct: 437 YIPLIQYFRQEKAKITEIEEKAKKAEEAKARFEAREAR-LQKEKDAR 482 >gi|188586370|ref|YP_001917915.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351057|gb|ACB85327.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Natranaerobius thermophilus JW/NM-WN-LF] Length = 170 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 26/85 (30%), Gaps = 10/85 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E+ R + + +E I C C C AI ++ Sbjct: 17 EQVKPPEHRREQGPVVMVECFQE--IPCDPCNKACNFGAIKPFEDIND--------LPEV 66 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPN 123 D KC CG+C CP AI Sbjct: 67 DFDKCNGCGVCVGYCPGLAIFIIDE 91 >gi|220916658|ref|YP_002491962.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219954512|gb|ACL64896.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 646 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 24/87 (27%), Gaps = 14/87 (16%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK----- 102 R + E+C+ C C +CP + + Sbjct: 547 RCLVCHVQTIYDPEKCVLCGRCVDVCPEYCLALVPLEDVDLPEEERRALAAAAEAGGLPL 606 Query: 103 ---------CIYCGLCQEACPVDAIVE 120 CI CGLC CP DA+ Sbjct: 607 SAMIKDDAPCIRCGLCAIRCPTDAMTM 633 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 14/47 (29%), Gaps = 1/47 (2%) Query: 77 AITIESGPRCHDGTRRTVRYDID-MIKCIYCGLCQEACPVDAIVEGP 122 A + I KC+ CG C + CP + P Sbjct: 535 AFAADEAIAQGARCLVCHVQTIYDPEKCVLCGRCVDVCPEYCLALVP 581 >gi|148827108|ref|YP_001291861.1| electron transport complex protein RnfC [Haemophilus influenzae PittGG] gi|148718350|gb|ABQ99477.1| electron transport complex protein RnfC [Haemophilus influenzae PittGG] Length = 683 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 12/101 (11%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C CP + + + + CI CG+C CP I Sbjct: 352 QACIRCSSCSDACPVN-LMPQQLYWFARSEDHKKSEEYALKDCIECGICAYVCPSH-IPL 409 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161 F RQE K ++ ++ + I ++ Sbjct: 410 IQYF------RQE----KAKIWQIKEKQKKSDEAKIRFEAK 440 >gi|145641063|ref|ZP_01796644.1| electron transport complex protein RnfC [Haemophilus influenzae R3021] gi|145274224|gb|EDK14089.1| electron transport complex protein RnfC [Haemophilus influenzae 22.4-21] Length = 763 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 12/101 (11%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C CP + + + + CI CG+C CP I Sbjct: 376 QACIRCSSCSDACPVN-LMPQQLYWFARSEDHKKSEEYALKDCIECGICAYVCPSH-IPL 433 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161 F RQE K ++ ++ + I ++ Sbjct: 434 IQYF------RQE----KAKIWQIKEKQKKSDEAKIRFEAK 464 >gi|145639159|ref|ZP_01794766.1| electron transport complex protein RnfC [Haemophilus influenzae PittII] gi|145271721|gb|EDK11631.1| electron transport complex protein RnfC [Haemophilus influenzae PittII] Length = 651 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 12/101 (11%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C CP + + + + CI CG+C CP I Sbjct: 376 QACIRCSSCSDACPVN-LMPQQLYWFARSEDHKKSEEYALKDCIECGICAYVCPSH-IPL 433 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161 F RQE K ++ ++ + I ++ Sbjct: 434 IQYF------RQE----KAKIWQIKEKQKKSDEAKIRFEAK 464 >gi|145635459|ref|ZP_01791160.1| electron transport complex protein RnfC [Haemophilus influenzae PittAA] gi|145267333|gb|EDK07336.1| electron transport complex protein RnfC [Haemophilus influenzae PittAA] Length = 868 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 12/101 (11%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C CP + + + + CI CG+C CP I Sbjct: 376 QACIRCSSCSDACPVN-LMPQQLYWFARSEDHKKSEEYALKDCIECGICAYVCPSH-IPL 433 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161 F RQE K ++ ++ + I ++ Sbjct: 434 IQYF------RQE----KAKIWQIKEKQKKSDEAKIRFEAK 464 >gi|145633619|ref|ZP_01789346.1| electron transport complex protein RnfC [Haemophilus influenzae 3655] gi|144985496|gb|EDJ92312.1| electron transport complex protein RnfC [Haemophilus influenzae 3655] Length = 707 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 12/101 (11%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C CP + + + + CI CG+C CP I Sbjct: 376 QACIRCSSCSDACPVN-LMPQQLYWFARSEDHKKSEEYALKDCIECGICAYVCPSH-IPL 433 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161 F RQE K ++ ++ + I ++ Sbjct: 434 IQYF------RQE----KAKIWQIKEKQKKSDEAKIRFEAK 464 >gi|126699484|ref|YP_001088381.1| putative iron-sulfur-binding membrane protein [Clostridium difficile 630] Length = 298 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 15/69 (21%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + RY +++CI C C+ +C +E + + ++CI CG C+ A Sbjct: 242 IFRYRLDKDKCINCGKCKKVCQMNIDPVE---------------NCNHLECIRCGRCKNA 286 Query: 113 CPVDAIVEG 121 CPVDAI G Sbjct: 287 CPVDAISYG 295 >gi|147921465|ref|YP_684720.1| putative heterodisulfide reductase, subunit A [uncultured methanogenic archaeon RC-I] gi|110620116|emb|CAJ35394.1| putative heterodisulfide reductase, subunit A [uncultured methanogenic archaeon RC-I] Length = 786 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 22/84 (26%), Gaps = 7/84 (8%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE-------SGPRCHDGTRRTVRY 96 FR ++C++C C A C + Y Sbjct: 227 PGDFRVTIETGPVFIDPDKCVSCGKCSAACSVRVPDEWNAGLSSRKAVYKPFAQAVPGTY 286 Query: 97 DIDMIKCIYCGLCQEACPVDAIVE 120 ID C CG C C AI Sbjct: 287 SIDPDACKRCGKCARECDARAINL 310 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 22/62 (35%), Gaps = 12/62 (19%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ERC C +C +CP A + ID + CI G C CP AI Sbjct: 581 DPERCTRCGICLKLCPYGAPYLNGKVA------------IDPLSCIGLGGCISRCPEHAI 628 Query: 119 VE 120 Sbjct: 629 TM 630 >gi|110597056|ref|ZP_01385345.1| Pyruvate:ferredoxin (flavodoxin) oxidoreductase [Chlorobium ferrooxidans DSM 13031] gi|110341247|gb|EAT59712.1| Pyruvate:ferredoxin (flavodoxin) oxidoreductase [Chlorobium ferrooxidans DSM 13031] Length = 1187 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 20/73 (27%), Gaps = 16/73 (21%) Query: 58 NGEERCIACKLCEAICPAQA--------ITIESGPRC--------HDGTRRTVRYDIDMI 101 CI C C +CP A IE+ PR I Sbjct: 689 WEPHLCIQCGKCAMVCPHAAVRAKVYDPKYIENAPRTFKSIQAKGASWEGMNYTIQIAPE 748 Query: 102 KCIYCGLCQEACP 114 C C +C CP Sbjct: 749 DCTGCIVCAHVCP 761 Score = 34.3 bits (77), Expect = 5.8, Method: Composition-based stats. Identities = 8/19 (42%), Positives = 9/19 (47%) Query: 100 MIKCIYCGLCQEACPVDAI 118 CI CG C CP A+ Sbjct: 691 PHLCIQCGKCAMVCPHAAV 709 >gi|121595764|ref|YP_987660.1| formate dehydrogenase subunit alpha [Acidovorax sp. JS42] gi|120607844|gb|ABM43584.1| NAD-dependent formate dehydrogenase catalytic subunit / NAD-dependent formate dehydrogenase iron-sulfur protein [Acidovorax sp. JS42] Length = 963 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 5/60 (8%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACPVDAI 118 CI C C C + + G + +D + C+ CG C +ACP A+ Sbjct: 183 CIQCNRCVRACREE-QVNDVIGYALRGADSKIVFDLDDPMGASTCVACGECVQACPTGAL 241 >gi|68250289|ref|YP_249401.1| electron transport complex protein RnfC [Haemophilus influenzae 86-028NP] gi|81335290|sp|Q4QJQ6|RNFC_HAEI8 RecName: Full=Electron transport complex protein rnfC gi|68058488|gb|AAX88741.1| predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Haemophilus influenzae 86-028NP] Length = 665 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 12/101 (11%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C CP + + + + CI CG+C CP I Sbjct: 376 QACIRCSSCSDACPVN-LMPQQLYWFARSEDHKKSEEYALKDCIECGICAYVCPSH-IPL 433 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161 F RQE K ++ ++ + I ++ Sbjct: 434 IQYF------RQE----KAKIWQIKEKQKKSDEAKIRFEAK 464 >gi|54309174|ref|YP_130194.1| putative glutamate synthase (NADPH) small subunit [Photobacterium profundum SS9] gi|46913606|emb|CAG20392.1| hypothetical NADPH-dependent glutamate synthase [Photobacterium profundum SS9] Length = 536 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 20/59 (33%), Gaps = 9/59 (15%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C CP AIT + Y +D KC C C CP AI Sbjct: 481 NCFECNGCLGACPQGAITHLGKGKG---------YKVDYDKCTGCEACYSQCPCHAIEM 530 >gi|39933811|ref|NP_946087.1| formate dehydrogenase subunit alpha [Rhodopseudomonas palustris CGA009] gi|39647658|emb|CAE26178.1| NAD-dependent formate dehydrogenase alpha subunit [Rhodopseudomonas palustris CGA009] Length = 948 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 29/97 (29%), Gaps = 6/97 (6%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVR 95 EK + +CI C C C T +G ++ Sbjct: 146 EKHPNPGLDESNPYFTYDAS---KCIVCSRCVRACEEVQGTFALTIAGRGFDSVVSPGMQ 202 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 +C+ CG C +ACP + E E T R Sbjct: 203 ESFLGSECVSCGACVQACPTATLNEKSVIEIGTPERS 239 >gi|16273572|ref|NP_439827.1| electron transport complex protein RnfC [Haemophilus influenzae Rd KW20] gi|17368309|sp|P71397|RNFC_HAEIN RecName: Full=Electron transport complex protein rnfC gi|1574537|gb|AAC23331.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20] Length = 819 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 12/101 (11%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C CP + + + + CI CG+C CP I Sbjct: 376 QACIRCSSCSDACPVN-LMPQQLYWFARSEDHKKSEEYALKDCIECGICAYVCPSH-IPL 433 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161 F RQE K ++ ++ + I ++ Sbjct: 434 IQYF------RQE----KAKIWQIKEKQKKSDEAKIRFEAK 464 >gi|145629223|ref|ZP_01785022.1| electron transport complex protein RnfC [Haemophilus influenzae 22.1-21] gi|144978726|gb|EDJ88449.1| electron transport complex protein RnfC [Haemophilus influenzae 22.1-21] gi|309750739|gb|ADO80723.1| Electron transport complex protein RnfC [Haemophilus influenzae R2866] Length = 763 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 12/101 (11%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C CP + + + + CI CG+C CP I Sbjct: 376 QACIRCSSCSDACPVN-LMPQQLYWFARSEDHKKSEEYALKDCIECGICAYVCPSH-IPL 433 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161 F RQE K ++ ++ + I ++ Sbjct: 434 IQYF------RQE----KAKIWQIKEKQKKSDEAKIRFEAK 464 >gi|148825771|ref|YP_001290524.1| electron transport complex protein RnfC [Haemophilus influenzae PittEE] gi|229845220|ref|ZP_04465353.1| electron transport complex protein RnfC [Haemophilus influenzae 6P18H1] gi|229847306|ref|ZP_04467408.1| electron transport complex protein RnfC [Haemophilus influenzae 7P49H1] gi|166225092|sp|A5UBJ0|RNFC_HAEIE RecName: Full=Electron transport complex protein rnfC gi|148715931|gb|ABQ98141.1| electron transport complex protein RnfC [Haemophilus influenzae PittEE] gi|229809731|gb|EEP45455.1| electron transport complex protein RnfC [Haemophilus influenzae 7P49H1] gi|229811815|gb|EEP47511.1| electron transport complex protein RnfC [Haemophilus influenzae 6P18H1] gi|309972919|gb|ADO96120.1| Electron transport complex protein RnfC [Haemophilus influenzae R2846] Length = 651 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 12/101 (11%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C CP + + + + CI CG+C CP I Sbjct: 376 QACIRCSSCSDACPVN-LMPQQLYWFARSEDHKKSEEYALKDCIECGICAYVCPSH-IPL 433 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161 F RQE K ++ ++ + I ++ Sbjct: 434 IQYF------RQE----KAKIWQIKEKQKKSDEAKIRFEAK 464 >gi|331268947|ref|YP_004395439.1| polyferredoxin [Clostridium botulinum BKT015925] gi|329125497|gb|AEB75442.1| polyferredoxin [Clostridium botulinum BKT015925] Length = 288 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 5/78 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQEAC 113 ++ C+AC C + CP I + + + R + CI CGLC +AC Sbjct: 167 NKDNCVACGACVSTCPKGVIELVPQKQLVIVSCNSHDRGLDVKNTCSTGCIGCGLCVKAC 226 Query: 114 PVDAIVEGPNFEFATETR 131 P +AI N ++ Sbjct: 227 PKEAIKLENNLPVIDYSK 244 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 27/67 (40%), Gaps = 11/67 (16%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L CI C LC CP +AI +E+ ID KC+ CGLC Sbjct: 206 LDVKNTCSTGCIGCGLCVKACPKEAIKLENNLPV-----------IDYSKCVNCGLCAMK 254 Query: 113 CPVDAIV 119 CP AI Sbjct: 255 CPTKAIQ 261 >gi|320169962|gb|EFW46861.1| ATP-binding cassette sub-family E member 1 [Capsaspora owczarzaki ATCC 30864] Length = 602 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 20/56 (35%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 K C C + G C + I CI CG+C + CP +AI Sbjct: 21 KKCRQECKKSCPVVRMGKLCIEVAPTDKISYISEELCIGCGICVKKCPFEAISIIN 76 >gi|315607997|ref|ZP_07882990.1| pyruvate:ferredoxin oxidoreductase [Prevotella buccae ATCC 33574] gi|315250466|gb|EFU30462.1| pyruvate:ferredoxin oxidoreductase [Prevotella buccae ATCC 33574] Length = 1195 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 26/82 (31%), Gaps = 16/82 (19%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTR------------R 92 RG A E CI C C +CP I + + Sbjct: 680 RGVAAFVPTW-ASENCIQCNKCSYVCPHACIRPFVLDENEKAGFNEPTLDVLAPKQLKGM 738 Query: 93 TVRYDIDMIKCIYCGLCQEACP 114 R ++ ++ C CG C + CP Sbjct: 739 QFRIEVSVLDCTGCGNCADVCP 760 >gi|303251991|ref|ZP_07338162.1| electron transport complex protein RnfC [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|302649421|gb|EFL79606.1| electron transport complex protein RnfC [Actinobacillus pleuropneumoniae serovar 2 str. 4226] Length = 729 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 34/107 (31%), Gaps = 3/107 (2%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E CI C C CP + + + + CI CG+C CP Sbjct: 379 PEPERSCIRCSSCSDACPVG-LLPQQLYWYARSEDHDKSKEYHLDACIECGVCAYVCP-S 436 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 I F E+ ++ R+E+ R + + R Sbjct: 437 YIPLIQYFRQEKAKITEIEEKAKKAEEAKARFEAREAR-LQKEKDAR 482 >gi|301061154|ref|ZP_07201943.1| putative CoB--CoM heterodisulfide reductase iron-sulfur subunit A [delta proteobacterium NaphS2] gi|300444696|gb|EFK08672.1| putative CoB--CoM heterodisulfide reductase iron-sulfur subunit A [delta proteobacterium NaphS2] Length = 647 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 12/61 (19%), Positives = 19/61 (31%), Gaps = 2/61 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +C+ C C + + R ++ C CG C CP +AI Sbjct: 562 DLNKCLGTGTCVNACIVEGALSLVEMDVDG--EKVKRAQVNPALCTGCGACVAVCPENAI 619 Query: 119 V 119 Sbjct: 620 N 620 >gi|291520273|emb|CBK75494.1| 4Fe-4S binding domain [Butyrivibrio fibrisolvens 16/4] Length = 56 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 11/61 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C++C CE CP AI+ ++ ID C+ CG C CP AI + Sbjct: 7 DSCVSCGTCEPECPVGAISQGD-----------SQFQIDETACVECGTCAGVCPTGAISQ 55 Query: 121 G 121 G Sbjct: 56 G 56 >gi|325681301|ref|ZP_08160830.1| protein HymB [Ruminococcus albus 8] gi|324106992|gb|EGC01279.1| protein HymB [Ruminococcus albus 8] Length = 378 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 28/66 (42%), Gaps = 10/66 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L +Y ++C C LC CPA AIT + ID KCI CG+C Sbjct: 320 LLQYEIVADKCKGCTLCARNCPAGAITGT----------VKNPHVIDTDKCIKCGVCMSN 369 Query: 113 CPVDAI 118 C AI Sbjct: 370 CKFGAI 375 Score = 37.4 bits (85), Expect = 0.60, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 17/43 (39%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 I+ + ++Y+I KC C LC CP AI Sbjct: 306 HIKDKKCPAGVCKNLLQYEIVADKCKGCTLCARNCPAGAITGT 348 >gi|291280505|ref|YP_003497340.1| ferredoxin-dependent glutamate synthase subunit alpha [Deferribacter desulfuricans SSM1] gi|290755207|dbj|BAI81584.1| ferredoxin-dependent glutamate synthase, alpha subunit [Deferribacter desulfuricans SSM1] Length = 546 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 28/85 (32%), Gaps = 14/85 (16%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCH--------------DGTRRTVRYDI 98 + +RC C C A CP +AI R + Sbjct: 15 FWQIEYKHDRCTLCGRCVAACPFKAIEARVERRRKVISDDITPNPKVIFQTVPVIKQVVD 74 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPN 123 + C CG+C++ CP DAI N Sbjct: 75 EYNFCRGCGICEKVCPNDAIRPVRN 99 >gi|268611863|ref|ZP_06145590.1| electron transport complex, RnfABCDGE type, B subunit [Ruminococcus flavefaciens FD-1] Length = 268 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 30/62 (48%), Gaps = 11/62 (17%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + + CI CK+CE CP++AI +E+ ID KC CG C ACPV Sbjct: 209 SCKNGCIGCKICEKKCPSEAIKVEN-----------FHASIDYEKCTNCGSCMAACPVKV 257 Query: 118 IV 119 I Sbjct: 258 IH 259 Score = 35.1 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 21/64 (32%), Gaps = 11/64 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI C +C AI +E+G + C CG C CP I Sbjct: 136 CKYGCIGLGDCVNVCEHGAIKVENG-----------VAKVIPSLCGACGQCAAVCPNQLI 184 Query: 119 VEGP 122 P Sbjct: 185 SIKP 188 >gi|260582611|ref|ZP_05850400.1| electron transport complex protein RnfC [Haemophilus influenzae NT127] gi|260094283|gb|EEW78182.1| electron transport complex protein RnfC [Haemophilus influenzae NT127] Length = 645 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 12/101 (11%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C CP + + + + CI CG+C CP I Sbjct: 376 QACIRCSSCSDACPVN-LMPQQLYWFARSEDHKKSEEYALKDCIECGICAYVCPSH-IPL 433 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161 F RQE K ++ ++ + I ++ Sbjct: 434 IQYF------RQE----KAKIWQIKEKQKKSDEAKIRFEAK 464 >gi|238916167|ref|YP_002929684.1| NADH dehydrogenase I chain G [Eubacterium eligens ATCC 27750] gi|238871527|gb|ACR71237.1| NADH dehydrogenase I chain G [Eubacterium eligens ATCC 27750] Length = 560 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 21/68 (30%), Gaps = 3/68 (4%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGT---RRTVRYDIDMIKCIYCGLCQEACPV 115 ++CI C C +C +I C CG C CPV Sbjct: 141 DAQKCIKCMRCVQVCDNIQGMHIWDVVNTGSRTTVNVRANKNIAETACTLCGQCVSNCPV 200 Query: 116 DAIVEGPN 123 A+ E + Sbjct: 201 GALTERDD 208 >gi|170290840|ref|YP_001737656.1| pyruvate:ferredoxin oxidoreductase, delta subunit [Candidatus Korarchaeum cryptofilum OPF8] gi|170174920|gb|ACB07973.1| Pyruvate:ferredoxin oxidoreductase, delta subunit [Candidatus Korarchaeum cryptofilum OPF8] Length = 91 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 10/72 (13%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 GE A+ + E +CI C LC CP + D+ C CG+ Sbjct: 27 GEWAVFQPKIDESKCIKCGLCWMYCPDSVYRWDGESVPVP----------DLDHCKGCGI 76 Query: 109 CQEACPVDAIVE 120 C+ CP AI Sbjct: 77 CEVECPTKAIQM 88 Score = 33.9 bits (76), Expect = 7.9, Method: Composition-based stats. Identities = 14/48 (29%), Positives = 16/48 (33%) Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 A+ S G + ID KCI CGLC CP Sbjct: 14 GAVAFISAKEYPTGEWAVFQPKIDESKCIKCGLCWMYCPDSVYRWDGE 61 >gi|124002599|ref|ZP_01687451.1| 4Fe-4S binding domain protein [Microscilla marina ATCC 23134] gi|123991827|gb|EAY31214.1| 4Fe-4S binding domain protein [Microscilla marina ATCC 23134] Length = 592 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 10/67 (14%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R + R NG +CI+C C C + +I C+ CG Sbjct: 505 RFKSRFRITTNG-GQCISCGNCSTYCEMGIDVRAYAQKGQ---------NIVRASCVGCG 554 Query: 108 LCQEACP 114 +C CP Sbjct: 555 ICAAVCP 561 >gi|189423702|ref|YP_001950879.1| ferredoxin III, nif-specific [Geobacter lovleyi SZ] gi|189419961|gb|ACD94359.1| ferredoxin III, nif-specific [Geobacter lovleyi SZ] Length = 89 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 20/62 (32%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI C C C + + + + + +CI CG C CP + Sbjct: 23 DIDTCIGCGRCFKACSKGVLELTTIEVEEHYLEKDIMTIKHPGRCIGCGACGRTCPKNCF 82 Query: 119 VE 120 Sbjct: 83 TL 84 >gi|160898303|ref|YP_001563885.1| dihydropyrimidine dehydrogenase [Delftia acidovorans SPH-1] gi|160363887|gb|ABX35500.1| dihydroorotate dehydrogenase family protein [Delftia acidovorans SPH-1] Length = 439 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 11/66 (16%) Query: 59 GEERCIACKLCEAICP---AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 ++ CI C C C QAIT R+++D +C+ C LC CPV Sbjct: 342 NQDSCIQCGRCHVACEDTSHQAITFSKEGGV-------RRFEVDDTECVGCNLCVSICPV 394 Query: 116 D-AIVE 120 I Sbjct: 395 PECITM 400 >gi|118474239|ref|YP_891594.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Campylobacter fetus subsp. fetus 82-40] gi|118413465|gb|ABK81885.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Campylobacter fetus subsp. fetus 82-40] Length = 1184 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 26/133 (19%), Positives = 42/133 (31%), Gaps = 30/133 (22%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA------------------QAIT 79 FE G+T RG + E CI C C +CP + Sbjct: 667 FEAGTTEYEKRGVGVMVPKWIE-ENCIQCNQCAFVCPHAVIRPFLIDEKELSAAPKGVKS 725 Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP--VDAIVEGP--------NFEFATE 129 + + + + + C C LC + CP ++V P E A Sbjct: 726 HVLDAKGKEIKEFKYKIQVSPLDCTGCELCAQNCPSKEKSLVMVPLGEEMDKGEQENADY 785 Query: 130 TRQELYYDKERLL 142 + + Y K+ L+ Sbjct: 786 LFKNVKY-KDDLM 797 >gi|126178757|ref|YP_001046722.1| indolepyruvate ferredoxin oxidoreductase [Methanoculleus marisnigri JR1] gi|125861551|gb|ABN56740.1| Indolepyruvate ferredoxin oxidoreductase [Methanoculleus marisnigri JR1] Length = 589 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 26/74 (35%), Gaps = 15/74 (20%) Query: 48 RGEHALRRYPNGEERCIACKLCEAI-CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 R + Y ERC C C + CPA A ++ C C Sbjct: 526 RSGIKRKPYTVDPERCTGCGACRSFGCPAIAFVDKNATITE--------------LCAGC 571 Query: 107 GLCQEACPVDAIVE 120 G+C + CP AIV Sbjct: 572 GVCADICPSGAIVM 585 >gi|145220211|ref|YP_001130920.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [Prosthecochloris vibrioformis DSM 265] gi|145206375|gb|ABP37418.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Chlorobium phaeovibrioides DSM 265] Length = 1182 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 27/102 (26%), Gaps = 24/102 (23%) Query: 58 NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRYDID--MI 101 + CI C C +CP A + ++Y I Sbjct: 689 WESDLCIECGKCAMVCPHAAIRAKVYDPKFLENAPRTFKSIEAKGTSWAGMKYTIQVAPE 748 Query: 102 KCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLN 143 C C +C CP + A R+ L + L Sbjct: 749 DCTGCRICANICPAR--------DKADPERKALVMQPQEPLR 782 >gi|95931038|ref|ZP_01313766.1| ferredoxin-dependent glutamate synthase [Desulfuromonas acetoxidans DSM 684] gi|95132934|gb|EAT14605.1| ferredoxin-dependent glutamate synthase [Desulfuromonas acetoxidans DSM 684] Length = 547 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 28/84 (33%), Gaps = 14/84 (16%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPR---------CHDGTRRTVRYDIDM---- 100 + RC C C A C +AI + R R + I Sbjct: 16 WKLRYDASRCTLCGSCVAACSFRAIEPKIERRRMVFSEGDLPDPRARFSAVPVIQQVNSL 75 Query: 101 -IKCIYCGLCQEACPVDAIVEGPN 123 C CG+C++ CP DAI N Sbjct: 76 KNYCRGCGICEKVCPNDAIAPVRN 99 >gi|53728861|ref|ZP_00348259.1| COG4656: Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207655|ref|YP_001052880.1| electron transport complex protein RnfC [Actinobacillus pleuropneumoniae L20] gi|126096447|gb|ABN73275.1| electron transport complex protein RnfC [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 770 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 34/107 (31%), Gaps = 3/107 (2%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E CI C C CP + + + + CI CG+C CP Sbjct: 379 PEPERSCIRCSSCSDACPVG-LLPQQLYWYARSEDHDKSKEYHLDACIECGVCAYVCP-S 436 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 I F E+ ++ R+E+ R + + R Sbjct: 437 YIPLIQYFRQEKAKITEIEEKAKKAEEAKARFEAREAR-LQKEKDAR 482 >gi|303250916|ref|ZP_07337107.1| electron transport complex protein RnfC [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650222|gb|EFL80387.1| electron transport complex protein RnfC [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 770 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 34/107 (31%), Gaps = 3/107 (2%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E CI C C CP + + + + CI CG+C CP Sbjct: 379 PEPERSCIRCSSCSDACPVG-LLPQQLYWYARSEDHDKSKEYHLDACIECGVCAYVCP-S 436 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 I F E+ ++ R+E+ R + + R Sbjct: 437 YIPLIQYFRQEKAKITEIEEKAKKAEEAKARFEAREAR-LQKEKDAR 482 >gi|238762546|ref|ZP_04623516.1| Pyruvate-flavodoxin oxidoreductase [Yersinia kristensenii ATCC 33638] gi|238699191|gb|EEP91938.1| Pyruvate-flavodoxin oxidoreductase [Yersinia kristensenii ATCC 33638] Length = 1177 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 22/135 (16%), Positives = 32/135 (23%), Gaps = 36/135 (26%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAIC 73 + L + P + + A + C C C A C Sbjct: 646 MLAGLGDAL------PVSAFPPDGTWPVGTTQWEKRNIAEDIPIWQPDLCTQCNHCVAAC 699 Query: 74 PAQA------------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 P A +++ R G + + C C LC E CP Sbjct: 700 PHSAIRAKVVQPNAMLGAPESLQSLDVKARDMRGQKY--VLQVAPEDCTGCNLCYEVCPA 757 Query: 116 --------DAIVEGP 122 AI P Sbjct: 758 KDRQNPEIKAINMQP 772 >gi|258405501|ref|YP_003198243.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Desulfohalobium retbaense DSM 5692] gi|257797728|gb|ACV68665.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Desulfohalobium retbaense DSM 5692] Length = 793 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 20/58 (34%), Gaps = 4/58 (6%) Query: 59 GEERCIACKLC--EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 C +C C +C R G + D KCI CG C +ACP Sbjct: 725 CAAECASCGACRDCGLCIEICPQTAINRRQLSGEDFEMVAD--PEKCIGCGFCAQACP 780 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 4/38 (10%) Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140 C CGLC E CP AI + E + + D E+ Sbjct: 735 CRDCGLCIEICPQTAINRRQ---LSGEDFE-MVADPEK 768 >gi|298530775|ref|ZP_07018177.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfonatronospira thiodismutans ASO3-1] gi|298510149|gb|EFI34053.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfonatronospira thiodismutans ASO3-1] Length = 307 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 11/62 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E CI C C CP QAI + + C+ CG+C CPV + Sbjct: 237 DQELCIKCGECAQACPFQAIAMSREGPV-----------VSQDLCMGCGVCVSRCPVQGL 285 Query: 119 VE 120 Sbjct: 286 KL 287 Score = 40.5 bits (93), Expect = 0.084, Method: Composition-based stats. Identities = 12/27 (44%), Positives = 13/27 (48%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPN 123 D D CI CG C +ACP AI Sbjct: 235 DADQELCIKCGECAQACPFQAIAMSRE 261 >gi|210621816|ref|ZP_03292845.1| hypothetical protein CLOHIR_00790 [Clostridium hiranonis DSM 13275] gi|210154580|gb|EEA85586.1| hypothetical protein CLOHIR_00790 [Clostridium hiranonis DSM 13275] Length = 578 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 23/104 (22%), Positives = 39/104 (37%), Gaps = 8/104 (7%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93 I+ P+ + + + L R + +CI C C +C T + G+R Sbjct: 119 IDLPYNQKFKKKPWNKDFPLIRDSS---KCIKCMRCVQVCENVQNTRIWE-VGNTGSRTD 174 Query: 94 VRY----DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 V I+ C CG C CPV A+ E + + + + Sbjct: 175 VVVSLNRKIEESDCALCGQCITHCPVGALRERDDVDKVFDALAD 218 >gi|165975623|ref|YP_001651216.1| electron transport complex protein RnfC [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|165875724|gb|ABY68772.1| putative iron-sulfur binding NADH dehydrogenase [Actinobacillus pleuropneumoniae serovar 3 str. JL03] Length = 770 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 34/107 (31%), Gaps = 3/107 (2%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E CI C C CP + + + + CI CG+C CP Sbjct: 379 PEPERSCIRCSSCSDACPVG-LLPQQLYWYARSEDHDKSKEYHLDACIECGVCAYVCP-S 436 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 I F E+ ++ R+E+ R + + R Sbjct: 437 YIPLIQYFRQEKAKITEIEEKAKKAEEAKARFEAREAR-LQKEKDAR 482 >gi|225427605|ref|XP_002271392.1| PREDICTED: hypothetical protein [Vitis vinifera] Length = 605 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 24/56 (42%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 K C C +++G C + T + I CI CG+C + CP +AI Sbjct: 19 KKCRQECKKSCPVVKTGKLCIEVTPASKIAFISEELCIGCGICVKKCPFEAIQIIN 74 >gi|153879377|ref|ZP_02004810.1| Ferredoxin [Beggiatoa sp. PS] gi|152064159|gb|EDN65190.1| Ferredoxin [Beggiatoa sp. PS] Length = 93 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 29/98 (29%), Positives = 37/98 (37%), Gaps = 17/98 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC---- 106 L + CI C +CE CP AI+ Y ID C C Sbjct: 3 KKLIMALYITDECINCDVCEPECPNGAISQGEE-----------IYIIDPNLCTECVGHY 51 Query: 107 --GLCQEACPVDAIVEGPNFEFATETRQELYYDKERLL 142 C + CPVD I + PN E + E +E YY + L Sbjct: 52 ETSQCVDVCPVDCIPKDPNHEESEEKLREKYYRLTKEL 89 >gi|90418565|ref|ZP_01226477.1| putative 4Fe-4S ferredoxin, iron-sulfur binding protein [Aurantimonas manganoxydans SI85-9A1] gi|90338237|gb|EAS51888.1| putative 4Fe-4S ferredoxin, iron-sulfur binding protein [Aurantimonas manganoxydans SI85-9A1] Length = 576 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 24/74 (32%), Gaps = 9/74 (12%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + C C C CP A++ + C+ CGLC+ CP Sbjct: 416 HVQTDGCTLCHACVTACPTGALSASEDRPLLSFSH---------GACVQCGLCESTCPEQ 466 Query: 117 AIVEGPNFEFATET 130 I P +FA Sbjct: 467 VITLEPTLDFAAWN 480 Score = 40.1 bits (92), Expect = 0.10, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 15/58 (25%), Gaps = 11/58 (18%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C C QAI ID C CG C CP A Sbjct: 186 TGCTRCLDACAMQAIAPAGE-----------HVTIDAYVCAGCGNCAAVCPTGAASYT 232 >gi|150015660|ref|YP_001307914.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Clostridium beijerinckii NCIMB 8052] gi|149902125|gb|ABR32958.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Clostridium beijerinckii NCIMB 8052] Length = 252 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 18/85 (21%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 N E+CI+C +C+ +CP I IE+ + KC C C CP + Sbjct: 180 FNVNEKCISCNMCKKVCPVDNIVIENNRPK------------WLGKCTDCMACINICPKE 227 Query: 117 AIVEG------PNFEFATETRQELY 135 AI G + R+EL Sbjct: 228 AINIGKSTIKKNRYLNPYIKREELI 252 >gi|189345592|ref|YP_001942121.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chlorobium limicola DSM 245] gi|189339739|gb|ACD89142.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chlorobium limicola DSM 245] Length = 517 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 31/85 (36%), Gaps = 16/85 (18%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 EKG+ R LR C C +E+ + DG D Sbjct: 41 EKGTFPDTRRYFTVLR-----------CNHCAEPPCVDICPVEALQKRPDG-----IVDF 84 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPN 123 D +CI C C +ACP +A+ P+ Sbjct: 85 DSRRCIGCKACAQACPYNALYIDPD 109 Score = 42.0 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 7/75 (9%) Query: 56 YPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTRRTVRYDIDMIKCIYCGL-- 108 + +CI C C C ++ GT R +++C +C Sbjct: 5 FVIDARKCIGCHACTVACKSENQVPLGVNRTWVKYVEKGTFPDTRRYFTVLRCNHCAEPP 64 Query: 109 CQEACPVDAIVEGPN 123 C + CPV+A+ + P+ Sbjct: 65 CVDICPVEALQKRPD 79 Score = 40.9 bits (94), Expect = 0.054, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 36/132 (27%), Gaps = 32/132 (24%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLR--YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNG 59 R + V + +F LR + + P E P Sbjct: 34 RTWVKYVEKGTFPDTRR-YFTVLRCNHCAEPPCVDICPVEALQKRPD-------GIVDFD 85 Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG---------LCQ 110 RCI CK C CP A+ I+ KC YC C Sbjct: 86 SRRCIGCKACAQACPYNALYIDPD-------------THTSAKCNYCAHRKEVGLQPACV 132 Query: 111 EACPVDAIVEGP 122 CP AIV G Sbjct: 133 AICPQQAIVSGD 144 >gi|330830389|ref|YP_004393341.1| pyridine nucleotide-disulfide oxidoreductase family protein [Aeromonas veronii B565] gi|328805525|gb|AEB50724.1| Pyridine nucleotide-disulfide oxidoreductase family protein [Aeromonas veronii B565] Length = 548 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 22/89 (24%), Gaps = 3/89 (3%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P G RC +C C + Y Sbjct: 461 PAWARDDFGEIIGGLDEVAARYEAARCYSCGNCFEC---DGCYGSCPEQAIAKLGPGKGY 517 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 +D +C CG C + CP AI E Sbjct: 518 QVDAARCTGCGACYDQCPCHAIELRQPEE 546 >gi|329955179|ref|ZP_08296136.1| 4Fe-4S binding domain protein [Bacteroides clarus YIT 12056] gi|328526178|gb|EGF53197.1| 4Fe-4S binding domain protein [Bacteroides clarus YIT 12056] Length = 608 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 27/74 (36%), Gaps = 6/74 (8%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + C C +C CP AIT + ID CI C +C++ C Sbjct: 1 MIDKLAKIECCGCNVCGDACPKGAITFFEDNEG------FLYPSIDDDLCIKCNICEKVC 54 Query: 114 PVDAIVEGPNFEFA 127 PV I +FA Sbjct: 55 PVINIDALKQNDFA 68 >gi|312137027|ref|YP_004004364.1| archaeoflavoprotein, mj0208 family [Methanothermus fervidus DSM 2088] gi|311224746|gb|ADP77602.1| archaeoflavoprotein, MJ0208 family [Methanothermus fervidus DSM 2088] Length = 234 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 9/61 (14%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CK CE A A ++ +I+++KCI CG C++ACP +AIV G E Sbjct: 147 CKNCETCKAAAACPTDAIIPGR---------EIELLKCIGCGSCEKACPYNAIVGGKIIE 197 Query: 126 F 126 Sbjct: 198 I 198 >gi|308273572|emb|CBX30174.1| hypothetical protein N47_D29830 [uncultured Desulfobacterium sp.] Length = 289 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 14/62 (22%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C LC +C AI + + +D ++C CG+C CP AI Sbjct: 64 DKRFCTECGLCRDLCRWNAINDD--------------FIVDDLECEGCGVCVYFCPEKAI 109 Query: 119 VE 120 Sbjct: 110 EF 111 >gi|307244979|ref|ZP_07527076.1| Electron transport complex protein rnfC [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307253932|ref|ZP_07535784.1| Electron transport complex protein rnfC [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258386|ref|ZP_07540127.1| Electron transport complex protein rnfC [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306854144|gb|EFM86352.1| Electron transport complex protein rnfC [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306863136|gb|EFM95078.1| Electron transport complex protein rnfC [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867570|gb|EFM99417.1| Electron transport complex protein rnfC [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 725 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 34/107 (31%), Gaps = 3/107 (2%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E CI C C CP + + + + CI CG+C CP Sbjct: 379 PEPERSCIRCSSCSDACPVG-LLPQQLYWYARSEDHDKSKEYHLDACIECGVCAYVCP-S 436 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 I F E+ ++ R+E+ R + + R Sbjct: 437 YIPLIQYFRQEKAKITEIEEKAKKAEEAKARFEAREAR-LQKEKDAR 482 >gi|301058772|ref|ZP_07199759.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] gi|300447114|gb|EFK10892.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] Length = 743 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 22/70 (31%), Gaps = 10/70 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + RC CK C CP AI + + +C CG+C A Sbjct: 527 MTYPEFNMNRCTQCKRCTEECPFGAINEDEKANPLP----------NPTRCRRCGVCMGA 576 Query: 113 CPVDAIVEGP 122 CP I Sbjct: 577 CPERIISFKN 586 Score = 34.7 bits (78), Expect = 4.5, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 31/103 (30%), Gaps = 12/103 (11%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRF-----RGEHALRRYPNGEERCIACKLCEAICPAQA 77 L+Y F I +P+E T R + + + C + Sbjct: 459 TLKYGFPDSHFICFPYETRRTGIYSAGCVKRPMETAKALDDAAGAAMKAVQCSELTAVG- 517 Query: 78 ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 H + + +M +C C C E CP AI E Sbjct: 518 ------KAVHPRSGDMTYPEFNMNRCTQCKRCTEECPFGAINE 554 >gi|291613328|ref|YP_003523485.1| electron transport complex, RnfABCDGE type, C subunit [Sideroxydans lithotrophicus ES-1] gi|291583440|gb|ADE11098.1| electron transport complex, RnfABCDGE type, C subunit [Sideroxydans lithotrophicus ES-1] Length = 492 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 22/68 (32%), Gaps = 2/68 (2%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 CI C C CP + +E R + CI CG C CP I Sbjct: 365 SPCIRCSTCVRACPVGLLPLEMASRIRVSDLAGAV-AFGLKDCIACGSCSYVCPAH-IPL 422 Query: 121 GPNFEFAT 128 F +A Sbjct: 423 VHYFNYAK 430 >gi|225405649|ref|ZP_03760838.1| hypothetical protein CLOSTASPAR_04870 [Clostridium asparagiforme DSM 15981] gi|225042823|gb|EEG53069.1| hypothetical protein CLOSTASPAR_04870 [Clostridium asparagiforme DSM 15981] Length = 218 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 14/94 (14%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 +FF+ + + ++ AL Y ++C C LC CPA AI Sbjct: 137 HFFRDEYEAHIKEKRCPAGVC----KALLSYVIDRDKCRGCTLCARTCPAGAIVGS---- 188 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + ID+ KCI CG C E C AI Sbjct: 189 ------VKNPHVIDLNKCIKCGACMEKCKFGAIY 216 >gi|219853289|ref|YP_002467721.1| methanogenesis marker 16 metalloprotein [Methanosphaerula palustris E1-9c] gi|219547548|gb|ACL17998.1| methanogenesis marker 16 metalloprotein [Methanosphaerula palustris E1-9c] Length = 414 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 16/66 (24%) Query: 54 RRYPNGEERCIACKLC--EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 R N C+ C+ C +CP AI+ + ID +C+ CG C + Sbjct: 311 HRIQNDPSGCVHCETCRAATLCPTGAISPGA--------------VIDRDRCVNCGTCVQ 356 Query: 112 ACPVDA 117 CP A Sbjct: 357 VCPGPA 362 >gi|210631904|ref|ZP_03297116.1| hypothetical protein COLSTE_01006 [Collinsella stercoris DSM 13279] gi|210159829|gb|EEA90800.1| hypothetical protein COLSTE_01006 [Collinsella stercoris DSM 13279] Length = 401 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 26/63 (41%), Gaps = 3/63 (4%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV---RYDIDMIKCIYCGLCQEACPV 115 RC+ C CE IC A+ +TV ID +C+ CG C AC Sbjct: 200 DASRCVGCHACERICAHGAVGFAGTRERVLKNGQTVTTPVASIDHERCVGCGRCIGACNQ 259 Query: 116 DAI 118 DAI Sbjct: 260 DAI 262 >gi|193215465|ref|YP_001996664.1| ferredoxin [Chloroherpeton thalassium ATCC 35110] gi|193088942|gb|ACF14217.1| electron transport complex, RnfABCDGE type, B subunit [Chloroherpeton thalassium ATCC 35110] Length = 296 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 23/88 (26%), Positives = 29/88 (32%), Gaps = 11/88 (12%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 T+ E + E CIAC+ C +C AI IE+ Sbjct: 187 TLQPKRENRYFIACNSQDKGNIAKKMCEAACIACQKCVKVCEEDAIIIENNLA------- 239 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVE 120 I KC CG C E CPV+ Sbjct: 240 ----KIIQEKCTECGKCVEVCPVNVNCI 263 Score = 41.6 bits (96), Expect = 0.034, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 28/84 (33%), Gaps = 11/84 (13%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E + A + C+ C A C A+++E+G I Sbjct: 118 EYVGIQDCWAAIQAFVGPKQCKYSCMGLGSCIAYCDFGAMSLENG-----------LIKI 166 Query: 99 DMIKCIYCGLCQEACPVDAIVEGP 122 D +C CG C ACP + P Sbjct: 167 DDERCTGCGACIPACPTGVLTLQP 190 Score = 38.5 bits (88), Expect = 0.28, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 6/71 (8%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDG------TRRTVRYDIDMIKCIYCGLCQEA 112 +ERC C C CP +T++ + + + CI C C + Sbjct: 167 DDERCTGCGACIPACPTGVLTLQPKRENRYFIACNSQDKGNIAKKMCEAACIACQKCVKV 226 Query: 113 CPVDAIVEGPN 123 C DAI+ N Sbjct: 227 CEEDAIIIENN 237 >gi|154506154|ref|ZP_02042892.1| hypothetical protein RUMGNA_03696 [Ruminococcus gnavus ATCC 29149] gi|153793653|gb|EDN76073.1| hypothetical protein RUMGNA_03696 [Ruminococcus gnavus ATCC 29149] Length = 296 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 15/69 (21%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + RY ++CI C C+ +C +E + + ++CI CG C+ A Sbjct: 240 IFRYRLDTDKCINCGKCKKVCQMNIDPVE---------------NCNHLECIRCGRCKNA 284 Query: 113 CPVDAIVEG 121 CPVDAI G Sbjct: 285 CPVDAISYG 293 >gi|21226158|ref|NP_632080.1| heterodisulfate reductase subunit A [Methanosarcina mazei Go1] gi|41017211|sp|Q8Q0T0|HDRA_METMA RecName: Full=CoB--CoM heterodisulfide reductase 1 iron-sulfur subunit A gi|20904385|gb|AAM29752.1| Heterodisulfate reductase, subunit A [Methanosarcina mazei Go1] Length = 793 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 12/69 (17%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 ++CI C+ C +C I+I +D + C CG C ACPV Sbjct: 574 HVDPDKCIGCRTCVEVCKFGKISIVDKKAV-----------VDEVSCYGCGDCSAACPVG 622 Query: 117 AIVEGPNFE 125 AI NFE Sbjct: 623 AIQM-RNFE 630 Score = 42.4 bits (98), Expect = 0.023, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 29/101 (28%), Gaps = 11/101 (10%) Query: 29 KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88 T+ E S H CK C +C P + Sbjct: 206 HPNITLYTYSEVTDISGSVGKFHVRVTRKPRFVLEDKCKGCVDLCSEVCPVEIENPMNYG 265 Query: 89 GTRRTVRYD-----------IDMIKCIYCGLCQEACPVDAI 118 + Y ID C+ CGLCQ ACP +A+ Sbjct: 266 IGKSRAIYMPIPQSVPQVVLIDPDHCVGCGLCQLACPAEAV 306 >gi|14325065|dbj|BAB59990.1| pyruvate ferredoxin oxidoreductasse [POR] delta subunit [Thermoplasma volcanium GSS1] Length = 95 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 2/71 (2%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR--RTVRYDIDMIKCIYCGLC 109 +++ ++CI C +C CP AI I++G R + ID C CG+C Sbjct: 19 RIQKPTIQYDKCIRCMICWKYCPDNAIEIKTGDEKAPNERVAKMEFPAIDYKFCKGCGIC 78 Query: 110 QEACPVDAIVE 120 CP I Sbjct: 79 ANECPEKCIDM 89 >gi|114561972|ref|YP_749485.1| formate dehydrogenase, alpha subunit [Shewanella frigidimarina NCIMB 400] gi|114333265|gb|ABI70647.1| formate dehydrogenase, alpha subunit [Shewanella frigidimarina NCIMB 400] Length = 1406 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 15/75 (20%) Query: 59 GEERCIACKLCEAICPAQ---------AITIESGPRCH------DGTRRTVRYDIDMIKC 103 RCI+C C C Q A + ++ P + R ++ C Sbjct: 626 DANRCISCAACIDACHQQSGHNVISFEANSYQALPDAATTGISRNAPRVGFTASMNDSDC 685 Query: 104 IYCGLCQEACPVDAI 118 + CG C + CP A+ Sbjct: 686 VQCGNCVQVCPTGAL 700 >gi|322805278|emb|CBZ02842.1| anaerobic sulfite reductase subunit C [Clostridium botulinum H04402 065] Length = 321 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 21/78 (26%), Gaps = 8/78 (10%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 G + + RC+ C+ C C + D KCI Sbjct: 155 HDFGILGMTEPQYDKYRCVGCQACVNNC--------KKRVTGALRFENFKVIRDHEKCIG 206 Query: 106 CGLCQEACPVDAIVEGPN 123 CG C CP A Sbjct: 207 CGECVGKCPTGAWTRSKE 224 >gi|317471056|ref|ZP_07930431.1| 4Fe-4S binding domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316901497|gb|EFV23436.1| 4Fe-4S binding domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 202 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 24/97 (24%), Positives = 33/97 (34%), Gaps = 18/97 (18%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + EE+C C LC + C AI + G I C G C Sbjct: 1 MIRQIIKIDEEKCNGCGLCASACHEGAIQMIGGKAKL----------IRDDYCDGLGNCL 50 Query: 111 EACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDR 147 CP AI + E R+ Y+K +L N + Sbjct: 51 PMCPTGAI--------SFEDREAPDYNKAAVLENQRK 79 >gi|315609147|ref|ZP_07884116.1| electron transport complex protein RnfB [Prevotella buccae ATCC 33574] gi|315249217|gb|EFU29237.1| electron transport complex protein RnfB [Prevotella buccae ATCC 33574] Length = 306 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 25/82 (30%), Gaps = 11/82 (13%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P + + E CI C CE C AITI Sbjct: 198 PKGRRVYVLCVNKDKGAVAKKACEVACIGCGKCEKECKFDAITITDNLSY---------- 247 Query: 97 DIDMIKCIYCGLCQEACPVDAI 118 ID KC C C + CP AI Sbjct: 248 -IDFNKCRLCTKCVDVCPTGAI 268 Score = 41.6 bits (96), Expect = 0.036, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 30/83 (36%), Gaps = 12/83 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI----------DMIKCIYCGL 108 E++C AC C CP IE + G R V + CI CG Sbjct: 172 DEDKCTACGACAKACPR--HIIELRKKGPKGRRVYVLCVNKDKGAVAKKACEVACIGCGK 229 Query: 109 CQEACPVDAIVEGPNFEFATETR 131 C++ C DAI N + + Sbjct: 230 CEKECKFDAITITDNLSYIDFNK 252 >gi|307133273|ref|YP_003885289.1| Pyridine nucleotide-disulfide oxidoreductase family protein [Dickeya dadantii 3937] gi|306530802|gb|ADN00733.1| Pyridine nucleotide-disulfide oxidoreductase family protein [Dickeya dadantii 3937] Length = 664 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 31/86 (36%), Gaps = 15/86 (17%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRR 92 YP + PR R H + + C C C +CP QA+ R+ Sbjct: 30 RYPENRDDFHPRIRVFH--QGEQHTAVTCRHCEDSPCAKVCPTQALV-----------RK 76 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAI 118 + KCI C C ACP AI Sbjct: 77 QDGIQLVAEKCIGCKTCVLACPFGAI 102 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 11/74 (14%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC---GLCQEACPVDA 117 E+CI CK C CP AI++E+ + + CI C EACP A Sbjct: 85 EKCIGCKTCVLACPFGAISVETQSQGAIAHK--------CDLCIGRPEGQACVEACPTQA 136 Query: 118 IVEGPNFEFATETR 131 + + R Sbjct: 137 LHLVSERSLEEQRR 150 Score = 37.8 bits (86), Expect = 0.56, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 20/66 (30%), Gaps = 6/66 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY----DIDMIKCIYCGL--CQEA 112 + CI C CE C D R + + C +C C + Sbjct: 8 NAKDCIGCNACEIACVISHNHGRYPENRDDFHPRIRVFHQGEQHTAVTCRHCEDSPCAKV 67 Query: 113 CPVDAI 118 CP A+ Sbjct: 68 CPTQAL 73 >gi|298375410|ref|ZP_06985367.1| radical SAM domain-containing protein [Bacteroides sp. 3_1_19] gi|298267910|gb|EFI09566.1| radical SAM domain-containing protein [Bacteroides sp. 3_1_19] Length = 301 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 11/62 (17%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 ++CI C C +CP A+T+ + C CG C E CP A+ Sbjct: 49 RKKCIGCGACVDVCPTGALTLTEAGIVTN-----------RSLCRTCGRCAEVCPTLAME 97 Query: 120 EG 121 Sbjct: 98 MS 99 >gi|296085461|emb|CBI29193.3| unnamed protein product [Vitis vinifera] Length = 625 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 24/56 (42%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 K C C +++G C + T + I CI CG+C + CP +AI Sbjct: 39 KKCRQECKKSCPVVKTGKLCIEVTPASKIAFISEELCIGCGICVKKCPFEAIQIIN 94 >gi|257790533|ref|YP_003181139.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Eggerthella lenta DSM 2243] gi|257474430|gb|ACV54750.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella lenta DSM 2243] Length = 300 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 27/132 (20%), Positives = 40/132 (30%), Gaps = 26/132 (19%) Query: 4 FRCNVSFLFLKEFVGAFFLC-LRYFFKAKTTINYPFEKGSTS----PRFRGEHALRRYPN 58 R + LF + + L F PF K + +L Sbjct: 182 IRSALGQLFTWKLFVLIAVVVLSVLF------YRPFCKWICPLGAFYALMNKVSLLGIRV 235 Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +C++C C +C V + +CI CG C ACPVDAI Sbjct: 236 DACKCVSCGTCSKVCQMD---------------VDVVRAPNHAECIRCGKCIGACPVDAI 280 Query: 119 VEGPNFEFATET 130 + + E Sbjct: 281 SYRYGLDVSEEK 292 >gi|227499382|ref|ZP_03929493.1| ferredoxin hydrogenase [Anaerococcus tetradius ATCC 35098] gi|227218586|gb|EEI83826.1| ferredoxin hydrogenase [Anaerococcus tetradius ATCC 35098] Length = 577 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 3/68 (4%) Query: 59 GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQEACPV 115 +CI C+ CE +C Q + + T ++ + C +CG C CP Sbjct: 147 DPNKCILCRRCETMCNEVQTVGALAEVGRGFYTHVGSSFNRSMFETTCTFCGQCLSVCPT 206 Query: 116 DAIVEGPN 123 A+ E N Sbjct: 207 GALTEKNN 214 >gi|283795070|ref|ZP_06344223.1| putative ferredoxin [Clostridium sp. M62/1] gi|291077411|gb|EFE14775.1| putative ferredoxin [Clostridium sp. M62/1] gi|295115551|emb|CBL36398.1| hypothetical protein [butyrate-producing bacterium SM4/1] Length = 252 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 34/99 (34%), Gaps = 12/99 (12%) Query: 27 FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC 86 F + ++ F G + F + CI+C C +CP I ++ G Sbjct: 153 FPEPAISLKDKFISGIVNSLFYTFFVRSKKFRVSSSCISCGRCAKLCPLGNIRMKEGRP- 211 Query: 87 HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 + C +C C CPV+AI G E Sbjct: 212 -----------VWGDDCTHCMACICRCPVNAIEYGSRTE 239 >gi|225568085|ref|ZP_03777110.1| hypothetical protein CLOHYLEM_04158 [Clostridium hylemonae DSM 15053] gi|225163038|gb|EEG75657.1| hypothetical protein CLOHYLEM_04158 [Clostridium hylemonae DSM 15053] Length = 263 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 29/89 (32%), Gaps = 11/89 (12%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 + P+++ + CI CK+CE +C A+ + Sbjct: 185 KRLIELVPYDQKHLVQCSSKDKGKDVMKACSVGCIGCKMCEKVCQFDAVKVVDNIAY--- 241 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ID KC CG C E CP I Sbjct: 242 --------IDSEKCTNCGACAEKCPKKII 262 >gi|147821791|emb|CAN65893.1| hypothetical protein VITISV_021090 [Vitis vinifera] Length = 599 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 24/56 (42%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 K C C +++G C + T + I CI CG+C + CP +AI Sbjct: 19 KKCRQECKKSCPVVKTGKLCIEVTPASKIAFISEELCIGCGICVKKCPFEAIQIIN 74 >gi|126178577|ref|YP_001046542.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanoculleus marisnigri JR1] gi|125861371|gb|ABN56560.1| formylmethanofuran dehydrogenase, subunit G [Methanoculleus marisnigri JR1] Length = 90 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 31/82 (37%), Gaps = 6/82 (7%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR------YDIDMIKCIYCGLCQ 110 ERC C C CP A+ + + VR D + C CG+C Sbjct: 6 HINMERCTGCNNCVVACPVDALELYTEDPATKEKIYKVRDGKAVILDFNSELCAGCGVCV 65 Query: 111 EACPVDAIVEGPNFEFATETRQ 132 +ACP I +E +TR+ Sbjct: 66 QACPYGVIKLVGPWESRAKTRK 87 >gi|325262544|ref|ZP_08129281.1| putative [Fe] hydrogenase, large subunit HymC [Clostridium sp. D5] gi|324032376|gb|EGB93654.1| putative [Fe] hydrogenase, large subunit HymC [Clostridium sp. D5] Length = 562 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 21/71 (29%), Gaps = 3/71 (4%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV---RYDIDMIKCIYCGLCQEACPV 115 +CI C C C + D+ C+ CG C+ CP Sbjct: 141 DPNKCILCGDCVRTCDEIQGLGILDFAFRGSKMQVTPAFNKDLAQTDCVGCGQCRAVCPT 200 Query: 116 DAIVEGPNFEF 126 AI N E Sbjct: 201 GAITIKQNVEP 211 >gi|229518065|ref|ZP_04407509.1| electron transport complex protein RnfC [Vibrio cholerae RC9] gi|229344780|gb|EEO09754.1| electron transport complex protein RnfC [Vibrio cholerae RC9] Length = 725 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 25/86 (29%), Gaps = 10/86 (11%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 P K + + L N CI C C CP + P+ + Sbjct: 376 HAQVPITKTANCILAPTRNELTSSDNEMA-CIRCGQCAEACPVSLL-----PQQLQWHAK 429 Query: 93 TVRYDIDMI----KCIYCGLCQEACP 114 +D CI CG C CP Sbjct: 430 AEEFDKCEELDLKDCIECGACAYVCP 455 Score = 35.5 bits (80), Expect = 2.9, Method: Composition-based stats. Identities = 10/13 (76%), Positives = 10/13 (76%) Query: 103 CIYCGLCQEACPV 115 CI CG C EACPV Sbjct: 405 CIRCGQCAEACPV 417 >gi|167043325|gb|ABZ08029.1| putative 4Fe-4S binding domain protein [uncultured marine crenarchaeote HF4000_ANIW141N1] Length = 103 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 1/69 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+RCI C LC IC + G +R + +CI G C CP +I Sbjct: 10 DEQRCIGCALCVEICTTLGPDVLRVKPVE-GWKRGKAFVFYPERCISDGACIGVCPTKSI 68 Query: 119 VEGPNFEFA 127 + Sbjct: 69 FWMRPMNYT 77 >gi|188585338|ref|YP_001916883.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350025|gb|ACB84295.1| NADH dehydrogenase (quinone) [Natranaerobius thermophilus JW/NM-WN-LF] Length = 588 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 10/66 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L E+C C++C+ ICP AI E ++ID CI C C + Sbjct: 532 LTTIEVDPEKCSGCEICKQICPVDAIKGEKSE----------VHNIDSKVCIKCKECIDK 581 Query: 113 CPVDAI 118 CP++AI Sbjct: 582 CPLEAI 587 Score = 34.3 bits (77), Expect = 5.4, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 19/40 (47%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 I + + ++D KC C +C++ CPVDAI Sbjct: 518 HINNKYCRAGVCKNLTTIEVDPEKCSGCEICKQICPVDAI 557 >gi|159905698|ref|YP_001549360.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanococcus maripaludis C6] gi|159887191|gb|ABX02128.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus maripaludis C6] Length = 132 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 10/67 (14%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + +E+CI C C CP A++++S + +D +CI C C + C Sbjct: 73 KMIQKDDEKCIDCGACVVHCPVGALSVDSEFKIL----------LDEEECIGCKNCAKIC 122 Query: 114 PVDAIVE 120 PV+AI Sbjct: 123 PVNAIKI 129 Score = 33.9 bits (76), Expect = 8.4, Method: Composition-based stats. Identities = 11/24 (45%), Positives = 12/24 (50%) Query: 101 IKCIYCGLCQEACPVDAIVEGPNF 124 KCI CG C CPV A+ F Sbjct: 80 EKCIDCGACVVHCPVGALSVDSEF 103 >gi|150007689|ref|YP_001302432.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides distasonis ATCC 8503] gi|255013606|ref|ZP_05285732.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_7] gi|149936113|gb|ABR42810.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides distasonis ATCC 8503] Length = 596 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 5/64 (7%) Query: 59 GEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 +CI C+ CE +C A+T + + R D+ C YCG C CP Sbjct: 148 NMNKCIMCRRCETMCNTIQTVGALTAVNRGFNAAVSTAFER-DMAGSTCSYCGQCVSVCP 206 Query: 115 VDAI 118 V+A+ Sbjct: 207 VNAL 210 >gi|189423439|ref|YP_001950616.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Geobacter lovleyi SZ] gi|189419698|gb|ACD94096.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Geobacter lovleyi SZ] Length = 1193 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 16/73 (21%) Query: 58 NGEERCIACKLCEAICPAQAITIE----------------SGPRCHDGTRRTVRYDIDMI 101 E+ CI C +C +CP A+ ++ + + + + + Sbjct: 691 WDEKLCIQCGICSFVCPHAAVRMKSFDGKLLKDAPKTYKSADCKIKGQEGKKLTVQVAPE 750 Query: 102 KCIYCGLCQEACP 114 C CG C CP Sbjct: 751 DCTGCGACAHNCP 763 Score = 35.5 bits (80), Expect = 2.5, Method: Composition-based stats. Identities = 8/18 (44%), Positives = 10/18 (55%) Query: 103 CIYCGLCQEACPVDAIVE 120 CI CG+C CP A+ Sbjct: 696 CIQCGICSFVCPHAAVRM 713 >gi|20093898|ref|NP_613745.1| ferredoxin [Methanopyrus kandleri AV19] gi|19886839|gb|AAM01675.1| Ferredoxin [Methanopyrus kandleri AV19] Length = 147 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 26/62 (41%), Positives = 30/62 (48%), Gaps = 12/62 (19%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 E C AC LCE CP AI +E + ID C+ CGLC E CP DAI+ Sbjct: 14 HELCRACGLCEKECPTGAIEVEDSAK------------IDEKDCVRCGLCVEVCPFDAIL 61 Query: 120 EG 121 G Sbjct: 62 LG 63 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 28/70 (40%), Gaps = 9/70 (12%) Query: 59 GEERCIACKLCEAICPAQAI---------TIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 E+ C+ C LC +CP AI S R V I KC+ C C Sbjct: 41 DEKDCVRCGLCVEVCPFDAILLGRATCELPKGSYRIEVLTKRPEVSVRISESKCVGCQAC 100 Query: 110 QEACPVDAIV 119 +CPV+A+ Sbjct: 101 SSSCPVEALF 110 >gi|328887633|emb|CAJ68747.2| putative iron-sulfur binding protein Tn1549-like, CTn5-Orf32 [Clostridium difficile] Length = 296 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 15/69 (21%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + RY +++CI C C+ +C +E + + ++CI CG C+ A Sbjct: 240 IFRYRLDKDKCINCGKCKKVCQMNIDPVE---------------NCNHLECIRCGRCKNA 284 Query: 113 CPVDAIVEG 121 CPVDAI G Sbjct: 285 CPVDAISYG 293 >gi|319790198|ref|YP_004151831.1| molybdopterin dinucleotide-binding region protein [Thermovibrio ammonificans HB-1] gi|317114700|gb|ADU97190.1| molybdopterin dinucleotide-binding region protein [Thermovibrio ammonificans HB-1] Length = 1172 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 29/84 (34%), Gaps = 2/84 (2%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E + + E L YP + K+C+ ++ G R I Sbjct: 60 ETPEINLFWIEEKELGEYPKAKLIFSQEKICKQCFEHPCVSACPFNAISVG--RGGVVVI 117 Query: 99 DMIKCIYCGLCQEACPVDAIVEGP 122 D KC C C ACP +AIV Sbjct: 118 DDSKCTGCEKCVPACPFNAIVMDK 141 Score = 38.5 bits (88), Expect = 0.27, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 17/107 (15%) Query: 25 RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84 + F+ PF S RG + + +C C+ C CP AI ++ G Sbjct: 91 KQCFEHPCVSACPFNAISVG---RGGVVVI----DDSKCTGCEKCVPACPFNAIVMDKG- 142 Query: 85 RCHDGTRRTVRYDIDMIKCIYCG---LCQEACPVDAIVEGPNFEFAT 128 + + DI + + G C CP A+V G ++ + Sbjct: 143 ------NKARKCDICFERTVKGGDVPRCVAVCPSGALVFGNLYKPSG 183 >gi|303256659|ref|ZP_07342673.1| periplasmic nitrate reductase, NapG [Burkholderiales bacterium 1_1_47] gi|330999296|ref|ZP_08323013.1| ferredoxin-type protein NapG [Parasutterella excrementihominis YIT 11859] gi|302860150|gb|EFL83227.1| periplasmic nitrate reductase, NapG [Burkholderiales bacterium 1_1_47] gi|329575154|gb|EGG56705.1| ferredoxin-type protein NapG [Parasutterella excrementihominis YIT 11859] Length = 252 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 3/80 (3%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ--AITIESGPRCHDGTRRTVR 95 E + G A+ Y + + C++C CP Q AI I S PR Sbjct: 114 HELTDITEAKMGVAAIDHYTCLSWQGLRCEICYRDCPEQNKAIVIVSQPRQ-ISNHAMFV 172 Query: 96 YDIDMIKCIYCGLCQEACPV 115 +I KC CGLC +CP Sbjct: 173 PEIHPDKCTGCGLCVHSCPT 192 >gi|260687158|ref|YP_003218292.1| putative iron-sulfur-binding membrane protein [Clostridium difficile R20291] gi|260213175|emb|CBE04632.1| putative iron-sulfur-binding membrane protein [Clostridium difficile R20291] Length = 298 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 15/69 (21%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + RY +++CI C C+ +C +E + + ++CI CG C+ A Sbjct: 242 IFRYRLDKDKCINCGKCKKVCQMNIDPVE---------------NCNHLECIRCGRCKNA 286 Query: 113 CPVDAIVEG 121 CPVDAI G Sbjct: 287 CPVDAISYG 295 >gi|206901891|ref|YP_002250294.1| periplasmic [Fe] hydrogenase 1 [Dictyoglomus thermophilum H-6-12] gi|206740994|gb|ACI20052.1| periplasmic [Fe] hydrogenase 1 [Dictyoglomus thermophilum H-6-12] Length = 666 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 3/70 (4%) Query: 59 GEERCIACKLCEAICPAQ---AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 +CI C C +C A +G + + ++C+YCG C CP Sbjct: 140 DNTKCILCGDCVRVCEEVQGVAAIDIAGRGFQSKVTPAFGHSLADVECVYCGQCVAYCPT 199 Query: 116 DAIVEGPNFE 125 A+ + + Sbjct: 200 GALSIRNDID 209 >gi|170760254|ref|YP_001787599.1| iron-sulfur binding protein [Clostridium botulinum A3 str. Loch Maree] gi|169407243|gb|ACA55654.1| CobQ/CobB/MinD/ParA family protein [Clostridium botulinum A3 str. Loch Maree] Length = 281 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 24/67 (35%), Gaps = 15/67 (22%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E+ CI C C++IC AI + ID C CG C CP + Sbjct: 61 NIDEDVCIKCGKCKSICKFDAIEN---------------FKIDPFLCEGCGACTLTCPPN 105 Query: 117 AIVEGPN 123 AI Sbjct: 106 AIKLEDE 112 >gi|167768515|ref|ZP_02440568.1| hypothetical protein CLOSS21_03074 [Clostridium sp. SS2/1] gi|167710039|gb|EDS20618.1| hypothetical protein CLOSS21_03074 [Clostridium sp. SS2/1] gi|291560482|emb|CBL39282.1| hydrogenases, Fe-only [butyrate-producing bacterium SSC/2] Length = 570 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 31/90 (34%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93 ++ P++K + + L R + +C+ C I SG + Sbjct: 119 VDSPYKKEICIEEWDTRYPLVRDASKCVKCMRCIQVCDKIQGMHIWDVSGTGARTTVGVS 178 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 DI C CG C CP A+ E + Sbjct: 179 ENRDIKTADCALCGQCITHCPTGALRERDD 208 >gi|158340815|ref|YP_001521983.1| nitroreductase family protein, putative [Acaryochloris marina MBIC11017] gi|158311056|gb|ABW32669.1| nitroreductase family protein, putative [Acaryochloris marina MBIC11017] Length = 290 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 23/65 (35%), Gaps = 9/65 (13%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 ERC C C ICP G H +D +CI CG C CP + Sbjct: 5 QIDAERCQKCGKCVQICPTIFAQHTKGAIPHL---------LDTTRCIECGHCVAICPSE 55 Query: 117 AIVEG 121 AI Sbjct: 56 AISHS 60 Score = 35.8 bits (81), Expect = 1.7, Method: Composition-based stats. Identities = 8/30 (26%), Positives = 10/30 (33%) Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 ID +C CG C + CP Sbjct: 1 MATIQIDAERCQKCGKCVQICPTIFAQHTK 30 >gi|153811674|ref|ZP_01964342.1| hypothetical protein RUMOBE_02066 [Ruminococcus obeum ATCC 29174] gi|149832415|gb|EDM87500.1| hypothetical protein RUMOBE_02066 [Ruminococcus obeum ATCC 29174] Length = 281 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 15/66 (22%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 Y E+C+ C C C + ++ + + +CI CG C++ACP Sbjct: 227 YRVDMEKCVHCGKCAKACQMEVNPVD---------------NPNSAECIRCGRCKKACPT 271 Query: 116 DAIVEG 121 AI G Sbjct: 272 QAIQCG 277 >gi|153812235|ref|ZP_01964903.1| hypothetical protein RUMOBE_02634 [Ruminococcus obeum ATCC 29174] gi|149831642|gb|EDM86729.1| hypothetical protein RUMOBE_02634 [Ruminococcus obeum ATCC 29174] Length = 311 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 22/63 (34%), Gaps = 6/63 (9%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 ERCI C +C CP R D KCI C CQE CP Sbjct: 253 YIEPERCIRCGICVKSCPV------PDKAVDFRKGRENPPVYDYKKCIRCFCCQEMCPEK 306 Query: 117 AIV 119 AI Sbjct: 307 AIQ 309 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 9/24 (37%), Positives = 15/24 (62%) Query: 93 TVRYDIDMIKCIYCGLCQEACPVD 116 + I+ +CI CG+C ++CPV Sbjct: 249 QKKPYIEPERCIRCGICVKSCPVP 272 >gi|150403061|ref|YP_001330355.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta [Methanococcus maripaludis C7] gi|150034091|gb|ABR66204.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein [Methanococcus maripaludis C7] Length = 375 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 7/102 (6%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG------PRCHDGTR 91 F+K ++ Y + +C C+ IC + + Sbjct: 258 FQKEHLDEKYPSNEKWNEYWSRCIKCYGCRDVCPICFCKECALGEDYLDKGTIPPDPVMF 317 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 + +R CI CG C++ CPV+ I + A + QE Sbjct: 318 QGIRLSHMSFSCINCGQCEDVCPVE-IPLSKIYHRAQQRIQE 358 >gi|150402527|ref|YP_001329821.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanococcus maripaludis C7] gi|150033557|gb|ABR65670.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus maripaludis C7] Length = 132 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 10/67 (14%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + +E+CI C C CP A+++++ + +D +CI C C + C Sbjct: 73 KMIQKDDEKCIDCGACVVHCPVGALSVDNEFKIL----------LDEEECIGCKNCAKIC 122 Query: 114 PVDAIVE 120 PV+AI Sbjct: 123 PVNAIKI 129 Score = 35.1 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 11/24 (45%), Positives = 12/24 (50%) Query: 101 IKCIYCGLCQEACPVDAIVEGPNF 124 KCI CG C CPV A+ F Sbjct: 80 EKCIDCGACVVHCPVGALSVDNEF 103 >gi|88603224|ref|YP_503402.1| nitrite and sulfite reductase 4Fe-4S region [Methanospirillum hungatei JF-1] gi|88188686|gb|ABD41683.1| nitrite and sulphite reductase 4Fe-4S region [Methanospirillum hungatei JF-1] Length = 291 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 11/74 (14%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G + R C C C C +AI+I++G ++ C++CG+ Sbjct: 149 GITGVVRPYRVPGTCTGCGTCVQYCKEKAISIKNGQ-----------IQMNDDLCVHCGM 197 Query: 109 CQEACPVDAIVEGP 122 C ++CP I P Sbjct: 198 CIQSCPFHIIKAEP 211 >gi|56476886|ref|YP_158475.1| electron transport complex protein RnfB [Aromatoleum aromaticum EbN1] gi|56312929|emb|CAI07574.1| Electron transport complex protein RnfB [Aromatoleum aromaticum EbN1] Length = 176 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 10/60 (16%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C C +CP AI +++ C CG C E CP +A+ P Sbjct: 110 CIGCTRCIKVCPTDAILGGPKQ----------IHNVLRDACTGCGSCIERCPTEAMAMQP 159 Score = 37.4 bits (85), Expect = 0.74, Method: Composition-based stats. Identities = 12/25 (48%), Positives = 14/25 (56%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 I CI C C + CP DAI+ GP Sbjct: 105 IREEICIGCTRCIKVCPTDAILGGP 129 >gi|312880741|ref|ZP_07740541.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Aminomonas paucivorans DSM 12260] gi|310784032|gb|EFQ24430.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Aminomonas paucivorans DSM 12260] Length = 267 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 11/75 (14%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 + + + +RC+ C C +CPA I + G + +C+ Sbjct: 181 NWMAHSSFSEFSADPDRCVRCGRCARLCPAGNIAWQEGLLP-----------VWQDRCVV 229 Query: 106 CGLCQEACPVDAIVE 120 C C CP DA+ Sbjct: 230 CQRCAAVCPHDAVRL 244 Score = 33.5 bits (75), Expect = 9.3, Method: Composition-based stats. Identities = 9/36 (25%), Positives = 13/36 (36%) Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 + D +C+ CG C CP I + R Sbjct: 191 FSADPDRCVRCGRCARLCPAGNIAWQEGLLPVWQDR 226 >gi|310779995|ref|YP_003968327.1| sulfite reductase, subunit C [Ilyobacter polytropus DSM 2926] gi|309749318|gb|ADO83979.1| sulfite reductase, subunit C [Ilyobacter polytropus DSM 2926] Length = 324 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 28/83 (33%), Gaps = 8/83 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + G + RCI+C CE C + S + VR Sbjct: 147 CPNDCQKIRMHDFGIIGMTLPKLEPHRCISCGRCEKKCKS-----LSTGAIKMNNYKPVR 201 Query: 96 YDIDMIKCIYCGLCQEACPVDAI 118 + +CI CG C CPV A Sbjct: 202 ---EHDRCIGCGECVLNCPVSAW 221 >gi|309775696|ref|ZP_07670694.1| CoB--CoM heterodisulfide reductase 1 iron-sulfur subunit A [Erysipelotrichaceae bacterium 3_1_53] gi|308916535|gb|EFP62277.1| CoB--CoM heterodisulfide reductase 1 iron-sulfur subunit A [Erysipelotrichaceae bacterium 3_1_53] Length = 57 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 10/60 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI C C +CP A+++ + D CI CG C ACPV AI Sbjct: 6 DVDTCIGCGACVGVCPVGALSMNDEGKSVC----------DEGTCIDCGSCVSACPVSAI 55 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 9/23 (39%), Positives = 10/23 (43%) Query: 101 IKCIYCGLCQEACPVDAIVEGPN 123 CI CG C CPV A+ Sbjct: 8 DTCIGCGACVGVCPVGALSMNDE 30 >gi|307544487|ref|YP_003896966.1| formate dehydrogenase subunit alpha [Halomonas elongata DSM 2581] gi|307216511|emb|CBV41781.1| formate dehydrogenase, alpha subunit [Halomonas elongata DSM 2581] Length = 960 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T G D +C+ CG C + Sbjct: 165 YFSFDPSKCIVCSRCVRACEEVQGTFALTIDGRGFDSKVSPGQMEDFMDSECVSCGACVQ 224 Query: 112 ACPVDAIVE 120 ACP ++E Sbjct: 225 ACPTATLME 233 >gi|298675109|ref|YP_003726859.1| nitrite and sulphite reductase [Methanohalobium evestigatum Z-7303] gi|298288097|gb|ADI74063.1| nitrite and sulphite reductase 4Fe-4S region [Methanohalobium evestigatum Z-7303] Length = 644 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 11/66 (16%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G R EE+C C C +C AI+I +G ID CI CG Sbjct: 505 GIVGQMRPKIDEEKCTGCGRCSELCKLNAISIVAGKAV-----------IDRDLCINCGW 553 Query: 109 CQEACP 114 C CP Sbjct: 554 CVRGCP 559 Score = 34.3 bits (77), Expect = 5.4, Method: Composition-based stats. Identities = 13/41 (31%), Positives = 17/41 (41%) Query: 78 ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + G +R ID KC CG C E C ++AI Sbjct: 494 NSCVRAESNDIGIVGQMRPKIDEEKCTGCGRCSELCKLNAI 534 >gi|255525572|ref|ZP_05392507.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein [Clostridium carboxidivorans P7] gi|255510756|gb|EET87061.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein [Clostridium carboxidivorans P7] Length = 383 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 33/75 (44%), Gaps = 12/75 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 G ++C +C C C AI I+ + +I KC+ CGLC + CPV + Sbjct: 19 GLKKCTSCFGCVNACKFNAIEIKISEEGFY------KPEIIEDKCVNCGLCSKNCPVIS- 71 Query: 119 VEGPNFEFATETRQE 133 FE T++E Sbjct: 72 -----FESNNFTKEE 81 >gi|163814915|ref|ZP_02206303.1| hypothetical protein COPEUT_01066 [Coprococcus eutactus ATCC 27759] gi|158449854|gb|EDP26849.1| hypothetical protein COPEUT_01066 [Coprococcus eutactus ATCC 27759] Length = 597 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 11/58 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+CI CK C AI ++ G ID C CGLC + CPV AI Sbjct: 545 EKCIQCKKCIREIGCPAIILKDGKVA-----------IDESLCTGCGLCAQICPVGAI 591 >gi|126180361|ref|YP_001048326.1| nitrite and sulphite reductase 4Fe-4S region [Methanoculleus marisnigri JR1] gi|125863155|gb|ABN58344.1| nitrite and sulphite reductase 4Fe-4S region [Methanoculleus marisnigri JR1] Length = 283 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 11/65 (16%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 RR+P + C C CE +C A+ + G CI CG C C Sbjct: 153 RRFPLFADECEGCGACEKVCREGAVRVTDGKVL-----------FSEEACIGCGDCITIC 201 Query: 114 PVDAI 118 P +AI Sbjct: 202 PGEAI 206 >gi|157831039|pdb|1FCA|A Chain A, Structure Of The Ferredoxin From Clostridium Acidurici: Model At 1.8 Angstroms Resolution Length = 55 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 24/58 (41%), Positives = 26/58 (44%), Gaps = 11/58 (18%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 E CI+C CE CP AI+ RY ID CI CG C CPVDA Sbjct: 5 NEACISCGACEPECPVDAISQGG-----------SRYVIDADTCIDCGACAGVCPVDA 51 >gi|82540299|ref|XP_724478.1| hypothetical protein [Plasmodium yoelii yoelii str. 17XNL] gi|23479131|gb|EAA16043.1| 68 kDa protein [Plasmodium yoelii yoelii] Length = 663 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 1/70 (1%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 LR ++C K C C +++G C + + I + CI CG+C + Sbjct: 20 LRIAIVSTDKCKP-KKCHLECKKNCPIVKTGKFCIEVEHSSKIAFISEMLCIGCGICVKK 78 Query: 113 CPVDAIVEGP 122 CP +I Sbjct: 79 CPFSSITIIN 88 >gi|325288561|ref|YP_004264742.1| methyl-accepting chemotaxis sensory transducer [Syntrophobotulus glycolicus DSM 8271] gi|324963962|gb|ADY54741.1| methyl-accepting chemotaxis sensory transducer [Syntrophobotulus glycolicus DSM 8271] Length = 639 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 22/69 (31%), Gaps = 6/69 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 EE+C C C CP A + + CI CG C E C + Sbjct: 10 NTHEEKCQGCNKCIRHCPVDANVAYADEEGKIKVKVQA------ELCINCGECIEVCDHE 63 Query: 117 AIVEGPNFE 125 A + E Sbjct: 64 AREFYDDTE 72 >gi|317056952|ref|YP_004105419.1| hypothetical protein Rumal_2302 [Ruminococcus albus 7] gi|315449221|gb|ADU22785.1| hypothetical protein Rumal_2302 [Ruminococcus albus 7] Length = 205 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 30/84 (35%), Gaps = 14/84 (16%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 P E+ S F G + + CI C C + CP I + Sbjct: 133 KKPIERD--SFTFGGVESKASGYFVNDDCIGCGSCLSACPQSCIELNGKAV--------- 181 Query: 95 RYDIDMIKCIYCGLCQEACPVDAI 118 I C++CG C E CPV A+ Sbjct: 182 ---IRQENCLHCGNCAEVCPVGAV 202 >gi|300853893|ref|YP_003778877.1| NADH dehydrogenase-like protein [Clostridium ljungdahlii DSM 13528] gi|300434008|gb|ADK13775.1| NADH dehydrogenase related protein [Clostridium ljungdahlii DSM 13528] Length = 251 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 22/67 (32%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 R + E+ C+ C LC C S Y +CI C C Sbjct: 115 VKRFKLDPEQNCVLCGLCAKACKELGTGAISTVNRGMYKEVATPYHESSPECIGCASCAN 174 Query: 112 ACPVDAI 118 CP +AI Sbjct: 175 VCPTNAI 181 >gi|153955192|ref|YP_001395957.1| hypothetical protein CKL_2574 [Clostridium kluyveri DSM 555] gi|219855624|ref|YP_002472746.1| hypothetical protein CKR_2281 [Clostridium kluyveri NBRC 12016] gi|146348050|gb|EDK34586.1| Conserved hypothetical protein containing a ferredoxin domain [Clostridium kluyveri DSM 555] gi|219569348|dbj|BAH07332.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 245 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 24/86 (27%), Positives = 30/86 (34%), Gaps = 11/86 (12%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 PF K R + + +CI C C A+CP I +E G Sbjct: 159 PFLKSFVIAPIFRLSRSDRKFHADSKCIGCGKCAAVCPVSDIRMEKGRPAWQHK------ 212 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGP 122 KC+ C C CPV AI G Sbjct: 213 -----KCMQCCACINRCPVKAIQYGN 233 >gi|78185918|ref|YP_373961.1| Fe-S-cluster-containing hydrogenase components 1-like [Chlorobium luteolum DSM 273] gi|78165820|gb|ABB22918.1| Fe-S-cluster-containing hydrogenase components 1-like protein [Chlorobium luteolum DSM 273] Length = 523 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 31/85 (36%), Gaps = 16/85 (18%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 EKG+ R LR E C+ ICP +A+ +R Sbjct: 41 EKGTFPDTRRYFTVLRCNHCEEPPCV------DICPVEALHKRPDGIVDFDSR------- 87 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPN 123 +CI C C +ACP +++ P Sbjct: 88 ---RCIGCKACAQACPYNSVYIDPE 109 Score = 42.0 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 29/75 (38%), Gaps = 7/75 (9%) Query: 56 YPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTRRTVRYDIDMIKCIYCGL-- 108 + +CI C C C ++ GT R +++C +C Sbjct: 5 FVIDARKCIGCHACSVACKSENQVPLGVNRTWVKYVEKGTFPDTRRYFTVLRCNHCEEPP 64 Query: 109 CQEACPVDAIVEGPN 123 C + CPV+A+ + P+ Sbjct: 65 CVDICPVEALHKRPD 79 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 4/64 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RCI CK C CP ++ I+ + +K C CP AI Sbjct: 85 DSRRCIGCKACAQACPYNSVYIDPETQTTAKCSYCSHRVEIGLK----PACTVICPQQAI 140 Query: 119 VEGP 122 + G Sbjct: 141 ISGD 144 >gi|39996341|ref|NP_952292.1| glutamate synthase-related protein [Geobacter sulfurreducens PCA] gi|39983221|gb|AAR34615.1| glutamate synthase-related protein [Geobacter sulfurreducens PCA] gi|298505350|gb|ADI84073.1| glutamate synthase, FMN-Fe(II)-binding domain protein [Geobacter sulfurreducens KN400] Length = 509 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 22/72 (30%), Gaps = 11/72 (15%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 +CI CK+C C + + CI C C CP AI Sbjct: 21 KCIRCKVCIRQCAYEVHSYAEAIDTLTEDH---------TLCIGCRRCSALCPTGAITIR 71 Query: 122 PNFEFATETRQE 133 N E R E Sbjct: 72 SNEE--VFKRNE 81 >gi|325278932|ref|YP_004251474.1| NADH dehydrogenase (quinone) [Odoribacter splanchnicus DSM 20712] gi|324310741|gb|ADY31294.1| NADH dehydrogenase (quinone) [Odoribacter splanchnicus DSM 20712] Length = 596 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 26/96 (27%), Positives = 37/96 (38%), Gaps = 15/96 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 L +F+ + K AL + + C+ C LC CP AI Sbjct: 513 TLEHFYDEYV-AHIRDHKCPAGKC----KALLSFRIDPQLCVGCTLCSRNCPVDAI---- 563 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 G R+ + ID KCI CG C++ C +AI Sbjct: 564 -----IGERKEAHF-IDTTKCIKCGTCKDKCKFNAI 593 >gi|303242027|ref|ZP_07328519.1| Cobyrinic acid ac-diamide synthase [Acetivibrio cellulolyticus CD2] gi|302590445|gb|EFL60201.1| Cobyrinic acid ac-diamide synthase [Acetivibrio cellulolyticus CD2] Length = 276 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 21/62 (33%), Gaps = 11/62 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +C C C C AI + G I C +CG C CP DAI Sbjct: 62 DISKCNECGNCARACQFNAIAVVKGKVL-----------IFPQICHHCGACVLTCPNDAI 110 Query: 119 VE 120 E Sbjct: 111 NE 112 >gi|301310562|ref|ZP_07216501.1| putative 4Fe-4S binding domain protein [Bacteroides sp. 20_3] gi|300832136|gb|EFK62767.1| putative 4Fe-4S binding domain protein [Bacteroides sp. 20_3] Length = 301 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 11/62 (17%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 ++CI C C +CP A+T+ + C CG C E CP A+ Sbjct: 49 RKKCIGCGACVDVCPTGALTLTEAGIVTN-----------RSLCRTCGRCAEVCPTLAME 97 Query: 120 EG 121 Sbjct: 98 MS 99 >gi|289578043|ref|YP_003476670.1| hydrogenase, Fe-only [Thermoanaerobacter italicus Ab9] gi|289527756|gb|ADD02108.1| hydrogenase, Fe-only [Thermoanaerobacter italicus Ab9] Length = 581 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 3/67 (4%) Query: 59 GEERCIACKLCEAIC-PAQAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPV 115 +C+ C+ C ++C Q + T + + CI CG C E CPV Sbjct: 144 DPNKCVLCRRCVSVCSEVQNVFAIGMVNRGFKTMVAPSFGRSLKDSPCISCGQCIEVCPV 203 Query: 116 DAIVEGP 122 AI E Sbjct: 204 GAIYEKD 210 >gi|240948590|ref|ZP_04752963.1| electron transport complex protein RnfC [Actinobacillus minor NM305] gi|240297098|gb|EER47669.1| electron transport complex protein RnfC [Actinobacillus minor NM305] Length = 793 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 34/105 (32%), Gaps = 3/105 (2%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E CI C C CP + + + + CI CG+C CP Sbjct: 379 PEDERACIRCSSCSDACPVG-LLPQQLYWFARSEDHEKSKEYHLDACIECGVCAYVCP-S 436 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVR-NIVTDS 160 I F E+ ++ R+E+ R N ++ Sbjct: 437 YIPLIQYFRQEKAKIAEIDEKAKKAEEAKQRFEAREARLNKEKEA 481 >gi|229162093|ref|ZP_04290066.1| Dihydroorotate dehydrogenase 1 [Bacillus cereus R309803] gi|228621415|gb|EEK78268.1| Dihydroorotate dehydrogenase 1 [Bacillus cereus R309803] Length = 416 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 4/63 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117 ++ CI C C C + +G++ C+ C LC CPVD A Sbjct: 338 NDDVCIKCNKCYISCEDTSHQCIEIFTNDNGSKFLKV---REEDCVGCNLCSIVCPVDGA 394 Query: 118 IVE 120 I Sbjct: 395 IDM 397 >gi|255655479|ref|ZP_05400888.1| putative iron-sulfur protein [Clostridium difficile QCD-23m63] gi|296451471|ref|ZP_06893208.1| probable iron-sulfur protein [Clostridium difficile NAP08] gi|296880180|ref|ZP_06904146.1| probable iron-sulfur protein [Clostridium difficile NAP07] gi|296259738|gb|EFH06596.1| probable iron-sulfur protein [Clostridium difficile NAP08] gi|296428769|gb|EFH14650.1| probable iron-sulfur protein [Clostridium difficile NAP07] Length = 424 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 7/69 (10%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E C+ C C A CP AI+ ID +C+ CG+C C + Sbjct: 289 NINHESCVKCGKCIAACPIDAISKVKEDGKEY-------IKIDEDRCLGCGVCVRNCHKN 341 Query: 117 AIVEGPNFE 125 +I+ E Sbjct: 342 SIMLLKRDE 350 >gi|210611379|ref|ZP_03288890.1| hypothetical protein CLONEX_01080 [Clostridium nexile DSM 1787] gi|210152000|gb|EEA83007.1| hypothetical protein CLONEX_01080 [Clostridium nexile DSM 1787] Length = 296 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 15/69 (21%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + RY +++CI C C+ +C +E + + ++CI CG C+ A Sbjct: 240 IFRYRLDKDKCINCGKCKKVCQMNIDPVE---------------NCNHLECIRCGRCKNA 284 Query: 113 CPVDAIVEG 121 CPVDAI G Sbjct: 285 CPVDAISYG 293 >gi|167766487|ref|ZP_02438540.1| hypothetical protein CLOSS21_00993 [Clostridium sp. SS2/1] gi|317499518|ref|ZP_07957782.1| 4Fe-4S binding domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|167711896|gb|EDS22475.1| hypothetical protein CLOSS21_00993 [Clostridium sp. SS2/1] gi|316893172|gb|EFV15390.1| 4Fe-4S binding domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 296 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 15/69 (21%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + RY +++CI C C+ +C +E + + ++CI CG C+ A Sbjct: 240 IFRYRLDKDKCINCGKCKKVCQMNIDPVE---------------NCNHLECIRCGRCKNA 284 Query: 113 CPVDAIVEG 121 CPVDAI G Sbjct: 285 CPVDAISYG 293 >gi|166032054|ref|ZP_02234883.1| hypothetical protein DORFOR_01756 [Dorea formicigenerans ATCC 27755] gi|166027777|gb|EDR46534.1| hypothetical protein DORFOR_01756 [Dorea formicigenerans ATCC 27755] Length = 582 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 28/85 (32%), Gaps = 9/85 (10%) Query: 59 GEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 +CI C C +C AI + + I C+ CG C+ CP Sbjct: 153 DPNKCILCGDCVRMCDNVQGVNAIDFAYRGTEAIVSPAFNKP-IAQTDCVNCGQCRVVCP 211 Query: 115 VDAIVEGPNFEFATETRQELYYDKE 139 AI N + + DK+ Sbjct: 212 TGAISIKTNIDVVW----DALADKD 232 >gi|254976963|ref|ZP_05273435.1| putative iron-sulfur-binding membrane protein [Clostridium difficile QCD-66c26] gi|255651882|ref|ZP_05398784.1| putative iron-sulfur-binding membrane protein [Clostridium difficile QCD-37x79] gi|306520359|ref|ZP_07406706.1| putative iron-sulfur-binding membrane protein [Clostridium difficile QCD-32g58] Length = 296 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 15/69 (21%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + RY +++CI C C+ +C +E + + ++CI CG C+ A Sbjct: 240 IFRYRLDKDKCINCGKCKKVCQMNIDPVE---------------NCNHLECIRCGRCKNA 284 Query: 113 CPVDAIVEG 121 CPVDAI G Sbjct: 285 CPVDAISYG 293 >gi|62871418|gb|AAY18593.1| putative dihydropyrimidinase dehydrogenase [Bacillus sp. TS-23] Length = 349 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 19/63 (30%), Gaps = 4/63 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117 + CI C C C + G C+ C LC CPVD A Sbjct: 260 NTDVCINCNKCYIACEDASHQCIDRRADATGREYLKV---REEDCVGCNLCSLVCPVDGA 316 Query: 118 IVE 120 I Sbjct: 317 IDM 319 >gi|78046995|ref|YP_363170.1| ferredoxin [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|78035425|emb|CAJ23070.1| putative ferredoxin [Xanthomonas campestris pv. vesicatoria str. 85-10] Length = 156 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 31/85 (36%), Gaps = 11/85 (12%) Query: 39 EKGSTSPRFRGEHAL-RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 R RG H L + E CI C C CP AI G + + Sbjct: 80 VPARPYDRSRGAHKLPQVAWIVEADCIGCTKCIQACPVDAIV---------GGAKHMHTV 130 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 I + C C LC ACPVD I P Sbjct: 131 IAPL-CTGCELCLPACPVDCIELHP 154 >gi|313900506|ref|ZP_07833999.1| putative ferredoxin hydrogenase [Clostridium sp. HGF2] gi|312954568|gb|EFR36243.1| putative ferredoxin hydrogenase [Clostridium sp. HGF2] Length = 577 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 6/95 (6%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVR 95 P+EK + L R N +CI C C IC Q + + T V Sbjct: 122 PYEKKVMYTPWNQSFPLIRESN---KCIKCMRCIQICDKVQNLQVWDVQNTGSRTTVNVS 178 Query: 96 YD--IDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 + I+ +C CG C CPV+A+ + E A Sbjct: 179 LNRSIEEAECSLCGQCITHCPVNALHVREDSERAF 213 >gi|292656847|ref|YP_003536744.1| ferredoxin [Haloferax volcanii DS2] gi|291371411|gb|ADE03638.1| ferredoxin (3Fe-4S)(4Fe-4S) [Haloferax volcanii DS2] Length = 109 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 28/82 (34%), Gaps = 2/82 (2%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100 G P + + C+A C CP T P + + Sbjct: 24 GPVDPPEKHGIHGTHVAVDFDICLADGACLEDCPVDVFTWVDTPGHPESDIKAEPT--HE 81 Query: 101 IKCIYCGLCQEACPVDAIVEGP 122 +CI C LC + CPVDAI P Sbjct: 82 DQCIDCMLCVDVCPVDAIDVDP 103 >gi|283853033|ref|ZP_06370290.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio sp. FW1012B] gi|283571570|gb|EFC19573.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio sp. FW1012B] Length = 652 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 7/64 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +RC+ C C CP +AI R + ++ C CGLC CP AI Sbjct: 580 DIKRCVGCGKCIITCPFKAIK-------EVEFRGQKKAEVIETVCQGCGLCTSTCPQGAI 632 Query: 119 VEGP 122 Sbjct: 633 QLSH 636 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 27/87 (31%), Gaps = 13/87 (14%) Query: 57 PNGEERCIACKLCEAICPA----QAITIESGP----RCHDGTRRTVRYDIDMIKCI---- 104 E C C C CP+ A + GP + ID C Sbjct: 236 YVDWELCTGCGACTEKCPSKKNPDAFNEKIGPTTSINIPFPQAIPKKAVIDPTTCRQFVK 295 Query: 105 -YCGLCQEACPVDAIVEGPNFEFATET 130 CG+C + CP AI E TE Sbjct: 296 GKCGVCAKVCPTGAIRYDMTDELVTED 322 Score = 35.5 bits (80), Expect = 2.4, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 3/34 (8%) Query: 102 KCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 +C+ CG C CP AI EF + + E+ Sbjct: 583 RCVGCGKCIITCPFKAI---KEVEFRGQKKAEVI 613 >gi|218133340|ref|ZP_03462144.1| hypothetical protein BACPEC_01205 [Bacteroides pectinophilus ATCC 43243] gi|217992213|gb|EEC58217.1| hypothetical protein BACPEC_01205 [Bacteroides pectinophilus ATCC 43243] Length = 293 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 35/106 (33%), Gaps = 12/106 (11%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 G ++CI C +CE C QAIT +D KC Sbjct: 153 ENDIGIKGGMEVNWVSDKCINCGVCEKACREQAITFTGSEII-----------LDKSKCN 201 Query: 105 YCGLCQEACPVDAIVEGPNFEFATETR-QELYYDKERLLNNGDRWE 149 CG C +ACP DA F + Y E+LL E Sbjct: 202 NCGRCAKACPTDAWDTESGFIVSFGGLFGNRIYKGEQLLPMIKDEE 247 Score = 33.5 bits (75), Expect = 8.9, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 17/44 (38%) Query: 78 ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 G + + + KCI CG+C++AC AI Sbjct: 146 NNCLKAEENDIGIKGGMEVNWVSDKCINCGVCEKACREQAITFT 189 >gi|206901910|ref|YP_002251792.1| ketoisovalerate oxidoreductase subunit VorD [Dictyoglomus thermophilum H-6-12] gi|206741013|gb|ACI20071.1| ketoisovalerate oxidoreductase subunit VorD [Dictyoglomus thermophilum H-6-12] Length = 92 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 29/88 (32%), Gaps = 12/88 (13%) Query: 37 PFEKGSTSPRFR-GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P TS ++ G+ R +C C C CP A+ + Sbjct: 14 PIVPAQTSKEYKTGDWRTFRPEIDYSKCTTCLFCWLFCPDSAVKFDGQKVY--------- 64 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPN 123 ID C CG+C CPV AI Sbjct: 65 --IDYDYCKGCGVCAAECPVKAITMKEE 90 >gi|168185724|ref|ZP_02620359.1| electron transfer flavoprotein subunit alpha [Clostridium botulinum C str. Eklund] gi|169296383|gb|EDS78516.1| electron transfer flavoprotein subunit alpha [Clostridium botulinum C str. Eklund] Length = 396 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 12/63 (19%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++C+ CK+C CP AI IE+ + C CG C C +AI Sbjct: 9 DKCVGCKMCANTCPFGAIEIENKKA------------VIKDNCTLCGSCVSVCKFNAIEL 56 Query: 121 GPN 123 + Sbjct: 57 KKD 59 Score = 34.7 bits (78), Expect = 4.9, Method: Composition-based stats. Identities = 9/26 (34%), Positives = 11/26 (42%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGP 122 I KC+ C +C CP AI Sbjct: 5 TILKDKCVGCKMCANTCPFGAIEIEN 30 >gi|167629057|ref|YP_001679556.1| proton-translocating NADH-ubiquinone oxidoreductase 75 kd, chain g [Heliobacterium modesticaldum Ice1] gi|167591797|gb|ABZ83545.1| proton-translocating NADH-ubiquinone oxidoreductase 75 kd, chain g [Heliobacterium modesticaldum Ice1] Length = 630 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 3/67 (4%) Query: 57 PNGEERCIACKLCEAIC-PAQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEAC 113 + +C+ C+ CE+IC Q + + T ++ DM CI CG C AC Sbjct: 177 RHDLNKCVHCRRCESICAKVQENHVIAAQERGFDTIIAPAFNADMGDVACIMCGQCVLAC 236 Query: 114 PVDAIVE 120 PV A+ E Sbjct: 237 PVGALTE 243 >gi|197121866|ref|YP_002133817.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Anaeromyxobacter sp. K] gi|196171715|gb|ACG72688.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Anaeromyxobacter sp. K] Length = 646 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 24/87 (27%), Gaps = 14/87 (16%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK----- 102 R + E+C+ C C +CP + + Sbjct: 547 RCLICHVQTIYDPEKCVLCGRCVDVCPEYCLALVPLEDVDLPDEERRALAAAAEAGGLPL 606 Query: 103 ---------CIYCGLCQEACPVDAIVE 120 CI CGLC CP DA+ Sbjct: 607 SAMIKDDAPCIRCGLCAIRCPTDAMTM 633 Score = 39.3 bits (90), Expect = 0.16, Method: Composition-based stats. Identities = 10/47 (21%), Positives = 15/47 (31%), Gaps = 1/47 (2%) Query: 77 AITIESGPRCHDGTRRTVRYDID-MIKCIYCGLCQEACPVDAIVEGP 122 A ++ I KC+ CG C + CP + P Sbjct: 535 AFAVDEAIAQGARCLICHVQTIYDPEKCVLCGRCVDVCPEYCLALVP 581 >gi|161529045|ref|YP_001582871.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Nitrosopumilus maritimus SCM1] gi|160340346|gb|ABX13433.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Nitrosopumilus maritimus SCM1] Length = 100 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 1/69 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+RCI C LC IC + G +R + +CI G C CP +I Sbjct: 10 DEQRCIGCALCVEICTTLGPDVLRVKPVE-GWKRGKAFVFYPERCISDGACIGVCPTKSI 68 Query: 119 VEGPNFEFA 127 + Sbjct: 69 FWMRPMNYT 77 >gi|123479045|ref|XP_001322682.1| Iron only hydrogenase large subunit, C-terminal domain containing protein [Trichomonas vaginalis G3] gi|121905533|gb|EAY10459.1| Iron only hydrogenase large subunit, C-terminal domain containing protein [Trichomonas vaginalis G3] Length = 1102 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 25/78 (32%), Gaps = 9/78 (11%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100 R R E C+ C C +C G + G + ++ Sbjct: 110 PKRPIRGRKAEKTNALSFDPETCVNCGRCVRVC---------GDMQYIGALDEESHSLND 160 Query: 101 IKCIYCGLCQEACPVDAI 118 CI CG+C CP D + Sbjct: 161 NDCIQCGMCTTVCPTDCL 178 >gi|148269859|ref|YP_001244319.1| hydrogenase, Fe-only [Thermotoga petrophila RKU-1] gi|147735403|gb|ABQ46743.1| hydrogenase, Fe-only [Thermotoga petrophila RKU-1] Length = 582 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 3/65 (4%) Query: 59 GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDI--DMIKCIYCGLCQEACPV 115 +C+ C+ C C Q + I S T +D+ CI CG C CP Sbjct: 144 DLSKCVKCQRCVRTCSELQGMHIYSMVERGHRTYPGTPFDMPVYETDCIGCGQCAAFCPT 203 Query: 116 DAIVE 120 AIVE Sbjct: 204 GAIVE 208 >gi|152989151|ref|YP_001347023.1| electron transport complex protein RnfB [Pseudomonas aeruginosa PA7] gi|166991043|sp|A6V1T8|RNFB_PSEA7 RecName: Full=Electron transport complex protein rnfB gi|150964309|gb|ABR86334.1| probable ferredoxin [Pseudomonas aeruginosa PA7] Length = 188 Score = 44.3 bits (103), Expect = 0.005, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 25/70 (35%), Gaps = 10/70 (14%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 R E CI C C CP AI + + + + +C C LC E C Sbjct: 104 RVAYIREAECIGCTKCIQACPVDAIVGAA----------RLMHTVIADECTGCDLCLEPC 153 Query: 114 PVDAIVEGPN 123 PVD I Sbjct: 154 PVDCIEMREI 163 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 16/38 (42%) Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E P I +CI C C +ACPVDAI Sbjct: 91 EPEPLDAAEETPPRVAYIREAECIGCTKCIQACPVDAI 128 >gi|304440540|ref|ZP_07400427.1| ferredoxin hydrogenase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371018|gb|EFM24637.1| ferredoxin hydrogenase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 577 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 32/100 (32%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93 P+E+ + L R +C+ C + + G T Sbjct: 119 REIPYEEHLEKQEWNNNFPLIRDSTRCIKCMRCIQVCDKMQSLNVWGLEGTGARTTVNVT 178 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 I+ C CG C CPV A+ E + E A ++ Sbjct: 179 GGRKIEDANCSLCGQCITHCPVGALSERDDTEKAWNALED 218 >gi|298375635|ref|ZP_06985592.1| hydrogenase large subunit HymC [Bacteroides sp. 3_1_19] gi|298268135|gb|EFI09791.1| hydrogenase large subunit HymC [Bacteroides sp. 3_1_19] Length = 596 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 5/64 (7%) Query: 59 GEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 +CI C+ CE +C A+T + + R D+ C YCG C CP Sbjct: 148 NMNKCIMCRRCETMCNTIQTVGALTAVNRGFNAAVSTAFER-DMAGSTCSYCGQCVSVCP 206 Query: 115 VDAI 118 V+A+ Sbjct: 207 VNAL 210 >gi|257082641|ref|ZP_05577002.1| NAD-dependent formate dehydrogenase, alpha [Enterococcus faecalis E1Sol] gi|256990671|gb|EEU77973.1| NAD-dependent formate dehydrogenase, alpha [Enterococcus faecalis E1Sol] Length = 906 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 3/92 (3%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV 94 F +G P + + + + E+CI C+ C +C Q + + Sbjct: 133 FTEGKRMPCHQEDTSNPFFSYDPEKCIMCRRCARVCQLQQGRDVLSIANRGFETKMMPSY 192 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 D C CG C +CP A+ E+ Sbjct: 193 GQAFDQSICESCGNCVSSCPTGALTAKDTKEY 224 >gi|253578706|ref|ZP_04855977.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251849649|gb|EES77608.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 263 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 32/84 (38%), Gaps = 11/84 (13%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P+E+ + E CI CK CE CP AIT+++ Sbjct: 191 VPYEQTTFVQCSSHAKGKAVTSACEVGCIGCKKCEKTCPNGAITVDN-----------FC 239 Query: 96 YDIDMIKCIYCGLCQEACPVDAIV 119 ID KC CG C+E CP I Sbjct: 240 AHIDYSKCTNCGACKEVCPRHIIQ 263 >gi|225175972|ref|ZP_03729964.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1] gi|225168560|gb|EEG77362.1| NADH dehydrogenase (quinone) [Dethiobacter alkaliphilus AHT 1] Length = 618 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 29/73 (39%), Gaps = 12/73 (16%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 L Y E+C AC C CP++AIT + + ID KC CG+C Sbjct: 548 KELITYTIDAEKCSACGRCLKACPSEAITG----------AKKTPHAIDAEKCDKCGICF 597 Query: 111 EACP--VDAIVEG 121 CP AI Sbjct: 598 TECPDRFAAIQIT 610 Score = 38.2 bits (87), Expect = 0.38, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 19/40 (47%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 I + + + Y ID KC CG C +ACP +AI Sbjct: 536 HIRNKECPAKACKELITYTIDAEKCSACGRCLKACPSEAI 575 >gi|221369206|ref|YP_002520302.1| Electron transport complex, RnfABCDGE type, B subunit [Rhodobacter sphaeroides KD131] gi|221162258|gb|ACM03229.1| Electron transport complex, RnfABCDGE type, B subunit [Rhodobacter sphaeroides KD131] Length = 188 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 10/58 (17%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C C CP AI + + + CI C C EACP +AI Sbjct: 111 DHCTGCMRCFKRCPTDAIIGAN----------RQIHTVVTDACIGCNACIEACPTEAI 158 >gi|148910189|gb|ABR18176.1| unknown [Picea sitchensis] Length = 605 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 24/56 (42%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 K C C +++G C + + + I CI CG+C + CP +AI Sbjct: 19 KKCRQECKKSCPVVKTGKLCIEVSSASKIAFISEELCIGCGICVKKCPFEAIQIIN 74 >gi|253701389|ref|YP_003022578.1| electron transfer flavoprotein subunit alpha [Geobacter sp. M21] gi|251776239|gb|ACT18820.1| Electron transfer flavoprotein alpha subunit [Geobacter sp. M21] Length = 447 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 38/109 (34%), Gaps = 27/109 (24%) Query: 62 RCIACK-LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 +CIAC CE+ CP I + I KCI C C + C A+ Sbjct: 20 KCIACGARCESSCPVSGIQMSEAGEPS----------ILDGKCIGCAKCVKVCAAGALEM 69 Query: 121 GPNFEFATETRQELYYDKERLLNNG------DRWESEIVRNIVTDSPYR 163 T +EL K+ +G D E E+ + + YR Sbjct: 70 -------FYTPEELELLKQWEAQHGAVEEELDPAEKELRARL---AQYR 108 >gi|169351249|ref|ZP_02868187.1| hypothetical protein CLOSPI_02028 [Clostridium spiroforme DSM 1552] gi|169292311|gb|EDS74444.1| hypothetical protein CLOSPI_02028 [Clostridium spiroforme DSM 1552] Length = 582 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 3/68 (4%) Query: 59 GEERCIACKLC-EAICPAQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115 +C+ C C E Q + I T+ YD C+ CG C CPV Sbjct: 144 DTSKCVLCGRCVETCIKHQGLGILGFMNRGFKTKVGPVYDKSFADVNCMQCGQCINVCPV 203 Query: 116 DAIVEGPN 123 A+ E Sbjct: 204 GALHEKEE 211 >gi|167762989|ref|ZP_02435116.1| hypothetical protein BACSTE_01354 [Bacteroides stercoris ATCC 43183] gi|167699329|gb|EDS15908.1| hypothetical protein BACSTE_01354 [Bacteroides stercoris ATCC 43183] Length = 373 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 10/53 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 E CI C +C C AI + + + ID KC+ CG C C Sbjct: 194 ENCIGCNICVKHCAHDAIHLNAERKAE----------IDYTKCVGCGQCVALC 236 >gi|167623860|ref|YP_001674154.1| electron transport complex protein RnfB [Shewanella halifaxensis HAW-EB4] gi|167353882|gb|ABZ76495.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella halifaxensis HAW-EB4] Length = 189 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 22/62 (35%), Gaps = 10/62 (16%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C CP AI + + + C C LC CPVD I Sbjct: 112 DECIGCTKCIQACPVDAILGSGK----------LMHTVITDYCTGCDLCVAPCPVDCIDM 161 Query: 121 GP 122 P Sbjct: 162 LP 163 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 12/21 (57%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 I +CI C C +ACPVDAI Sbjct: 109 IREDECIGCTKCIQACPVDAI 129 >gi|157363815|ref|YP_001470582.1| hydrogenase large subunit [Thermotoga lettingae TMO] gi|157314419|gb|ABV33518.1| hydrogenase large subunit domain protein [Thermotoga lettingae TMO] Length = 653 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 3/70 (4%) Query: 59 GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115 +CI C C +C Q I + T+ T + ++ K C+YCG C CP Sbjct: 140 DNSKCILCGDCVRVCEEVQGIGVIDFAYRGFSTQVTPAFSNELAKSECVYCGQCVAHCPT 199 Query: 116 DAIVEGPNFE 125 A+ + E Sbjct: 200 AALTFRNDLE 209 >gi|154502657|ref|ZP_02039717.1| hypothetical protein RUMGNA_00470 [Ruminococcus gnavus ATCC 29149] gi|210617393|ref|ZP_03291557.1| hypothetical protein CLONEX_03779 [Clostridium nexile DSM 1787] gi|153796540|gb|EDN78960.1| hypothetical protein RUMGNA_00470 [Ruminococcus gnavus ATCC 29149] gi|210149323|gb|EEA80332.1| hypothetical protein CLONEX_03779 [Clostridium nexile DSM 1787] Length = 295 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 37/122 (30%), Gaps = 30/122 (24%) Query: 18 GAFFLCLRYFFKAKTTI-----------NYPFEKGSTS----PRFRGEHALRRYPNGEER 62 L + F K TI PF K + + + E+ Sbjct: 180 SGIRAALGHLFTFKFTILALFIILSILFYRPFCKWICPLGAIYSLFNKVSFLKIQVDHEK 239 Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C+ C +C +++ CI CG C +ACP DAI Sbjct: 240 CVGCQKCSRVCKMDVNVVDTPNHPE---------------CIRCGECMKACPTDAICYHY 284 Query: 123 NF 124 F Sbjct: 285 GF 286 >gi|149920538|ref|ZP_01909005.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Plesiocystis pacifica SIR-1] gi|149818582|gb|EDM78028.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Plesiocystis pacifica SIR-1] Length = 573 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 38/131 (29%), Gaps = 30/131 (22%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCL-RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 R + V + V F + + P T+ R + + + Sbjct: 34 RTWVKTVEHGAYPDVVRTFQVTRCNHCANPPCVRICP----VTAMYQRDDGIVEFDKD-- 87 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG---------LCQE 111 CI CK C CP AI I+ KC YC C Sbjct: 88 -ACIGCKACMQACPYDAIHIDPD-------------TGTAAKCHYCAHRVDAGLEPACAV 133 Query: 112 ACPVDAIVEGP 122 CP +AIV G Sbjct: 134 VCPTEAIVAGD 144 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 16/92 (17%), Positives = 28/92 (30%), Gaps = 17/92 (18%) Query: 56 YPNGEERCIACKLCEAICPAQA-----ITIESGPRCHDGTRRTVRYDIDMIKCIYCGL-- 108 + RCI C C C ++ + G V + +C +C Sbjct: 5 FVIDNTRCIGCHACSTACKSENEVPLGVNRTWVKTVEHGAYPDVVRTFQVTRCNHCANPP 64 Query: 109 CQEACPVDAIVEGPNFEFATETRQELYYDKER 140 C CPV A+ R + + ++ Sbjct: 65 CVRICPVTAM----------YQRDDGIVEFDK 86 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 26/86 (30%), Gaps = 12/86 (13%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYD 97 + G + RC C C ICP A+ Sbjct: 34 RTWVKTVEHGAYPDVVRTFQVTRCNHCANPPCVRICPVTAMYQRDDGIVEF--------- 84 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPN 123 D CI C C +ACP DAI P+ Sbjct: 85 -DKDACIGCKACMQACPYDAIHIDPD 109 >gi|150402418|ref|YP_001329712.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanococcus maripaludis C7] gi|150033448|gb|ABR65561.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus maripaludis C7] Length = 80 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 8/69 (11%) Query: 60 EERCIACKLCEAICPAQAITIE--------SGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 ++C C C CP A + S + V ++ C CG C E Sbjct: 8 PDKCHGCGNCVVACPVNAQDPDVYGGKGPSSDEKLIMRIENGVVSVVNGDLCGGCGACIE 67 Query: 112 ACPVDAIVE 120 ACPVDAI Sbjct: 68 ACPVDAIKL 76 Score = 33.9 bits (76), Expect = 7.2, Method: Composition-based stats. Identities = 10/25 (40%), Positives = 14/25 (56%) Query: 93 TVRYDIDMIKCIYCGLCQEACPVDA 117 + ++ KC CG C ACPV+A Sbjct: 1 MYKLEVYPDKCHGCGNCVVACPVNA 25 >gi|126178576|ref|YP_001046541.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanoculleus marisnigri JR1] gi|125861370|gb|ABN56559.1| formylmethanofuran dehydrogenase, subunit F [Methanoculleus marisnigri JR1] Length = 389 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 30/74 (40%), Gaps = 1/74 (1%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG-TRRTVRYDIDMIKCIYC 106 R A+ E C C +C CP +AI + G D++ KC YC Sbjct: 21 RLLKAVNNLILNAETCTGCGICVDACPEEAIVLGPVGATRRGAIDYAEPVDVNPEKCSYC 80 Query: 107 GLCQEACPVDAIVE 120 G+C CP +A+ Sbjct: 81 GVCVVMCPFNAMTL 94 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 3/69 (4%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E C C +C CP AIT+E R ++ + DI+ C C C ++CP + Sbjct: 205 QWEETTCDGCTICVEACPQDAITLE---REVISSKLPGKVDIEQDNCCTCTWCVQSCPQE 261 Query: 117 AIVEGPNFE 125 AI FE Sbjct: 262 AITVEKIFE 270 Score = 42.4 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 7/68 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRC-------HDGTRRTVRYDIDMIKCIYCGLCQE 111 E+C C +C +CP A+T++ + ID KC C +C+E Sbjct: 73 NPEKCSYCGVCVVMCPFNAMTLKIDGEERLPILEQEGFPTYDMVTTIDEEKCDRCTICEE 132 Query: 112 ACPVDAIV 119 CP DAI Sbjct: 133 VCPRDAIN 140 Score = 39.7 bits (91), Expect = 0.12, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 25/80 (31%), Gaps = 5/80 (6%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT-IESGPRCHDGTRRTV 94 P E + F G+ + C C +CP A+ P Sbjct: 258 CPQEAITVEKIFEGDLEIHPEKCPGG----CSTCVEVCPCNALYLPSPLPAKDMKGEIEA 313 Query: 95 RYDIDMIKCIYCGLCQEACP 114 I+ CI CG C ACP Sbjct: 314 NIAINKDFCILCGACVNACP 333 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 9/86 (10%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---------ESGPRCHD 88 E+ + EE+C C +CE +CP AI E+G Sbjct: 99 EERLPILEQEGFPTYDMVTTIDEEKCDRCTICEEVCPRDAINRDVPAFEGGDEAGKPRET 158 Query: 89 GTRRTVRYDIDMIKCIYCGLCQEACP 114 + + +D KC CG+C E CP Sbjct: 159 ALQTRTTFTVDTEKCDVCGICGELCP 184 Score = 37.0 bits (84), Expect = 0.99, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 9/63 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY-CGLCQEACPVDA 117 ++ C C C CP +AIT+E +I KC C C E CP +A Sbjct: 244 EQDNCCTCTWCVQSCPQEAITVEKIFEGDL--------EIHPEKCPGGCSTCVEVCPCNA 295 Query: 118 IVE 120 + Sbjct: 296 LYL 298 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 12/22 (54%), Positives = 15/22 (68%) Query: 101 IKCIYCGLCQEACPVDAIVEGP 122 C CG+C +ACP +AIV GP Sbjct: 34 ETCTGCGICVDACPEEAIVLGP 55 >gi|121997094|ref|YP_001001881.1| RnfABCDGE type electron transport complex subunit C [Halorhodospira halophila SL1] gi|121588499|gb|ABM61079.1| electron transport complex, RnfABCDGE type, C subunit [Halorhodospira halophila SL1] Length = 506 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 25/74 (33%), Gaps = 5/74 (6%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 CI C C CP + + R G M C+ CG C CP A Sbjct: 369 RPCIRCGRCVDACPMGLMPFDIANRAAAGDVDGAAATGLMD-CLTCGSCAYVCP-SARPL 426 Query: 121 GPNFEFATETRQEL 134 F +A R +L Sbjct: 427 VQLFHYA---RGQL 437 >gi|150388476|ref|YP_001318525.1| hydrogenase, Fe-only [Alkaliphilus metalliredigens QYMF] gi|149948338|gb|ABR46866.1| hydrogenase, Fe-only [Alkaliphilus metalliredigens QYMF] Length = 582 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 3/67 (4%) Query: 59 GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQEACPV 115 +++CI C+ CE C Q I S T ++ + C YCG C CP Sbjct: 150 NQDKCILCRRCETACNEIQTCGILSALNRGFDTVVGPAFNLPMVETSCTYCGQCVAVCPT 209 Query: 116 DAIVEGP 122 A+ E Sbjct: 210 AALTEVN 216 >gi|296132457|ref|YP_003639704.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola sp. JR] gi|296031035|gb|ADG81803.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola potens JR] Length = 660 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 24/117 (20%), Positives = 34/117 (29%), Gaps = 15/117 (12%) Query: 29 KAKTTINYPFEKGSTSPR---FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 TI E S S F + +C C +CE CP + I+ Sbjct: 207 HPNITIMSYSEVESVSGYIGNFDVTIRKKARYVDINKCTGCGICETKCPTKVISEFEQGM 266 Query: 86 CHDGTRRTVRYD-------IDMIKCIY-----CGLCQEACPVDAIVEGPNFEFATET 130 ID + C CG+C + CP AI E ++ Sbjct: 267 GTRPCIYKPFPQAVPNKPVIDPVNCKKLKDGKCGVCAKVCPTGAINYEDKDELVSQK 323 Score = 38.9 bits (89), Expect = 0.26, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%) Query: 59 GEERCIACKLCEAICPAQAIT-IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 +E+C+ C LC +CP +AI+ E R H D++ C CG C C A Sbjct: 581 NQEKCVGCLLCSKVCPYKAISGKEITERVHGQEITRTVADVNSGLCQGCGACVPECRSGA 640 Query: 118 IVE 120 + Sbjct: 641 LNL 643 >gi|289191768|ref|YP_003457709.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus sp. FS406-22] gi|288938218|gb|ADC68973.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus sp. FS406-22] Length = 405 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 14/114 (12%) Query: 9 SFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKL 68 S +L EF + + K R+R + ++P +CI+C+ Sbjct: 4 SLWYLYEFAR------KKWIKRFIDAKSDKSSYIPPERYRKIPPIVKFPE---KCISCEA 54 Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ CPA A+ + + D CI C C E CP + Sbjct: 55 CKESCPAFAVEMVYSEEYNKNLPVF-----DEGSCIACANCVEVCPTGVLEMDK 103 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 30/90 (33%), Gaps = 9/90 (10%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + Y E+ CI C++C +C A AI I + Sbjct: 252 CPTTAIRIYKPIISKRKDICYVIDEDLCIGCRICYKVCGAGAIKISKETKLPY------- 304 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 I C+ G C CPV+AI E Sbjct: 305 --IVPELCVRGGACARECPVEAIKIVKPEE 332 Score = 38.9 bits (89), Expect = 0.21, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDG----TRRTVRYDIDMIKCIYCGLCQEACP 114 E CIAC C +CP + ++ +G + ID C+ CG C+ ACP Sbjct: 80 DEGSCIACANCVEVCPTGVLEMDKHRIETEGLFFDKPKYHNLIIDEEVCVRCGNCERACP 139 Query: 115 VDAI 118 ++ I Sbjct: 140 INVI 143 Score = 38.5 bits (88), Expect = 0.34, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 11/75 (14%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 + T F + EE C+ C CE CP I R+ +Y I+ Sbjct: 105 RIETEGLFFDKPKYHNLIIDEEVCVRCGNCERACPINVIE-----------RKEGKYVIN 153 Query: 100 MIKCIYCGLCQEACP 114 M CI C C +ACP Sbjct: 154 MALCISCKECVKACP 168 >gi|253998890|ref|YP_003050953.1| formate dehydrogenase subunit alpha [Methylovorus sp. SIP3-4] gi|313200989|ref|YP_004039647.1| formate dehydrogenase subunit alpha [Methylovorus sp. MP688] gi|253985569|gb|ACT50426.1| formate dehydrogenase, alpha subunit [Methylovorus sp. SIP3-4] gi|312440305|gb|ADQ84411.1| formate dehydrogenase, alpha subunit [Methylovorus sp. MP688] Length = 948 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 25/68 (36%), Gaps = 2/68 (2%) Query: 55 RYPNGEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + +CI C C C + R + + + +C+ CG C +A Sbjct: 157 YFTFDPSKCIVCSRCVRACEETQGTFALTIQGRGFESKVASGVNNFLESECVSCGACVQA 216 Query: 113 CPVDAIVE 120 CP ++E Sbjct: 217 CPTATLME 224 >gi|225016911|ref|ZP_03706103.1| hypothetical protein CLOSTMETH_00824 [Clostridium methylpentosum DSM 5476] gi|224950305|gb|EEG31514.1| hypothetical protein CLOSTMETH_00824 [Clostridium methylpentosum DSM 5476] Length = 501 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 9/64 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +RCIAC++CE C + + + T D KC+ C C CP A+ Sbjct: 15 NPQRCIACRVCERQCANEVHSYDPE---------TGTMRADESKCVNCHRCVTLCPTRAL 65 Query: 119 VEGP 122 Sbjct: 66 KIVK 69 >gi|160943828|ref|ZP_02091059.1| hypothetical protein FAEPRAM212_01326 [Faecalibacterium prausnitzii M21/2] gi|158445002|gb|EDP22005.1| hypothetical protein FAEPRAM212_01326 [Faecalibacterium prausnitzii M21/2] gi|295104052|emb|CBL01596.1| Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Faecalibacterium prausnitzii SL3/3] Length = 299 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 26/79 (32%), Gaps = 11/79 (13%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 + + CIAC +CE C AI + G ID Sbjct: 191 RKPVVMCSNKDKGAVANKLCTTSCIACGMCERTCKFDAIHVVDG-----------VARID 239 Query: 100 MIKCIYCGLCQEACPVDAI 118 KC CG+C + CP I Sbjct: 240 YDKCKGCGMCAQKCPKHII 258 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 6/67 (8%) Query: 59 GEERCIACKLCEAICPAQ------AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 +++C C C ICP Q A + C + + V + CI CG+C+ Sbjct: 164 DKDKCTGCGACANICPKQVIMIDAAGPRKPVVMCSNKDKGAVANKLCTTSCIACGMCERT 223 Query: 113 CPVDAIV 119 C DAI Sbjct: 224 CKFDAIH 230 Score = 36.2 bits (82), Expect = 1.3, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 20/58 (34%), Gaps = 11/58 (18%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 CI C +C AI I G +D KC CG C CP I+ Sbjct: 139 CIGLGDCTKVCKFDAIHIVDG-----------VAKVDKDKCTGCGACANICPKQVIMI 185 >gi|89895690|ref|YP_519177.1| hypothetical protein DSY2944 [Desulfitobacterium hafniense Y51] gi|89335138|dbj|BAE84733.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 367 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 26/60 (43%), Gaps = 12/60 (20%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 EERC AC C+ CPA AIT+ R ID CI CG C C AI Sbjct: 191 NEERCTACGKCKNWCPASAITVAGFAR------------IDEKLCIGCGECAVTCTFKAI 238 Score = 33.5 bits (75), Expect = 9.3, Method: Composition-based stats. Identities = 8/22 (36%), Positives = 12/22 (54%) Query: 97 DIDMIKCIYCGLCQEACPVDAI 118 ++ +C CG C+ CP AI Sbjct: 189 QVNEERCTACGKCKNWCPASAI 210 >gi|328949310|ref|YP_004366647.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Treponema succinifaciens DSM 2489] gi|328449634|gb|AEB15350.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Treponema succinifaciens DSM 2489] Length = 387 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 38/126 (30%), Gaps = 14/126 (11%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKT--TINYPFEKGSTSPRFRGEHALRRYPN 58 M ++ + + L K +T ++ PF ++ +R Sbjct: 218 MTTIPGLIAGIIFIGLFLGLVVVLPILTKRRTQCSMLCPFGAFASLTDKLSPFKMRIDTE 277 Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +C C C C AI + + + + T C CG C CP AI Sbjct: 278 ---KCKGCMKCAQACLFGAIDVATIQQKKNSPEIT---------CAKCGECVAVCPEKAI 325 Query: 119 VEGPNF 124 F Sbjct: 326 SYQFRF 331 >gi|325829764|ref|ZP_08163222.1| electron transport complex, RnfABCDGE type, C subunit [Eggerthella sp. HGA1] gi|325487931|gb|EGC90368.1| electron transport complex, RnfABCDGE type, C subunit [Eggerthella sp. HGA1] Length = 442 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 1/52 (1%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 CI C C CP Q ++ + + + D+ C+ CG C CP Sbjct: 368 CIRCGRCTNSCPMQ-LSPIAIKKAYTVQDAKKLDDLMADLCMGCGTCSFVCP 418 >gi|320354168|ref|YP_004195507.1| NAD(P)-dependent nickel-iron dehydrogenase diaphorase component subunit HoxU [Desulfobulbus propionicus DSM 2032] gi|320122670|gb|ADW18216.1| NAD(P)-dependent nickel-iron dehydrogenase diaphorase component subunit HoxU [Desulfobulbus propionicus DSM 2032] Length = 238 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 20/66 (30%), Gaps = 4/66 (6%) Query: 59 GEERCIACKLCEAIC--PAQAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLCQEACP 114 RC+ C C +C A T + R C CG C CP Sbjct: 146 DHNRCVLCTRCVRVCAEIEGAHTWDIKHRGIHSLIVADLDTSWGASETCTGCGKCVHVCP 205 Query: 115 VDAIVE 120 A+ E Sbjct: 206 TGALCE 211 >gi|310779383|ref|YP_003967716.1| Cobyrinic acid ac-diamide synthase [Ilyobacter polytropus DSM 2926] gi|309748706|gb|ADO83368.1| Cobyrinic acid ac-diamide synthase [Ilyobacter polytropus DSM 2926] Length = 285 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 19/61 (31%), Gaps = 11/61 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+C C C C AI I C CG C+ CP +AI Sbjct: 62 DMEKCNLCGKCGDFCRYNAILPAKDKVL-----------IFKEICHNCGGCEIVCPTNAI 110 Query: 119 V 119 Sbjct: 111 Q 111 >gi|303241626|ref|ZP_07328125.1| aldo/keto reductase [Acetivibrio cellulolyticus CD2] gi|302590846|gb|EFL60595.1| aldo/keto reductase [Acetivibrio cellulolyticus CD2] Length = 315 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 26/82 (31%), Gaps = 12/82 (14%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEER-CIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 F R A R+ + C C C +C A+ I+ Sbjct: 242 FNNEPIPESIRSIAAGRKKHLHIDYWCEGCGKCTEMCGQNALYIQDNKA----------- 290 Query: 97 DIDMIKCIYCGLCQEACPVDAI 118 + KC+ CG C CP AI Sbjct: 291 KVADEKCLLCGYCASVCPCFAI 312 >gi|325681306|ref|ZP_08160835.1| ferredoxin hydrogenase [Ruminococcus albus 8] gi|324106997|gb|EGC01284.1| ferredoxin hydrogenase [Ruminococcus albus 8] Length = 580 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 38/108 (35%), Gaps = 14/108 (12%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC-PAQAITIESGPRCHDGTRRTVR 95 P E +CI C C A C Q++++ R Sbjct: 127 PEEMNKPIDDSSPFLV-----RDNNKCIQCMRCVAACKNVQSVSVIGNIRRGFNVHVGSA 181 Query: 96 YDIDMIK--CIYCGLCQEACPVDAIVEGPNFEFATETR-QELYYDKER 140 +D + C+ CG C +CPV A+ E ++E + + D E+ Sbjct: 182 FDAPLASTACVGCGQCIVSCPVGALT-----EKSSEKKVWDAIADPEK 224 >gi|292654391|ref|YP_003534288.1| ferredoxin [Haloferax volcanii DS2] gi|291370147|gb|ADE02374.1| ferredoxin (3Fe-4S)(4Fe-4S) [Haloferax volcanii DS2] Length = 107 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 28/78 (35%), Gaps = 2/78 (2%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100 G P + + C+A C CP T P ++ + Sbjct: 24 GPVEPPEKLGIHGTHVAVDYDICLADGACLENCPVDVFTWVDTPDHPVSEKKVEPTN--E 81 Query: 101 IKCIYCGLCQEACPVDAI 118 +CI C LC + CPVDAI Sbjct: 82 DQCIDCMLCVDICPVDAI 99 >gi|262406412|ref|ZP_06082961.1| ferredoxin [Bacteroides sp. 2_1_22] gi|294643290|ref|ZP_06721116.1| ferredoxin [Bacteroides ovatus SD CC 2a] gi|294806484|ref|ZP_06765325.1| ferredoxin [Bacteroides xylanisolvens SD CC 1b] gi|262355115|gb|EEZ04206.1| ferredoxin [Bacteroides sp. 2_1_22] gi|292641413|gb|EFF59605.1| ferredoxin [Bacteroides ovatus SD CC 2a] gi|294446347|gb|EFG14973.1| ferredoxin [Bacteroides xylanisolvens SD CC 1b] Length = 317 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 9/65 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C C A C AI + ++D KC CG C +ACP I Sbjct: 138 CSYGCLGCGDCVAACQFDAIHMNPETGLP---------EVDEAKCTACGACVKACPKAII 188 Query: 119 VEGPN 123 P Sbjct: 189 EIRPQ 193 Score = 41.2 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 26/76 (34%), Gaps = 8/76 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------DMIKCIYCGLCQ 110 E +C AC C CP I I + + + CI CG C Sbjct: 169 DEAKCTACGACVKACPKAIIEIRPQGKKSRRVYVSCVNKDKGAVARKACTVSCIGCGKCV 228 Query: 111 EACPVDAIVEGPNFEF 126 + CP +AI N + Sbjct: 229 KTCPFEAITLENNLAY 244 Score = 40.9 bits (94), Expect = 0.061, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 11/62 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C C CP +AIT+E+ ID KC C C E CP ++I Sbjct: 217 CTVSCIGCGKCVKTCPFEAITLENNLAY-----------IDPHKCKSCRKCVEVCPQNSI 265 Query: 119 VE 120 +E Sbjct: 266 IE 267 >gi|255526809|ref|ZP_05393708.1| hydrogenase, Fe-only [Clostridium carboxidivorans P7] gi|296186425|ref|ZP_06854828.1| putative ferredoxin hydrogenase [Clostridium carboxidivorans P7] gi|255509488|gb|EET85829.1| hydrogenase, Fe-only [Clostridium carboxidivorans P7] gi|296048872|gb|EFG88303.1| putative ferredoxin hydrogenase [Clostridium carboxidivorans P7] Length = 574 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 3/68 (4%) Query: 59 GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPV 115 ++CI C+ CE +C Q ++ S T + + + C +CG C CP Sbjct: 148 DLDKCILCRRCETVCSEIQTVSALSAVSRGFDTIVSPAFGTAMVETNCTFCGQCVAVCPT 207 Query: 116 DAIVEGPN 123 A+ E N Sbjct: 208 GALAEVNN 215 >gi|257790463|ref|YP_003181069.1| electron transport complex, RnfABCDGE type, C subunit [Eggerthella lenta DSM 2243] gi|317490037|ref|ZP_07948528.1| electron transport complex [Eggerthella sp. 1_3_56FAA] gi|257474360|gb|ACV54680.1| electron transport complex, RnfABCDGE type, C subunit [Eggerthella lenta DSM 2243] gi|316910878|gb|EFV32496.1| electron transport complex [Eggerthella sp. 1_3_56FAA] Length = 442 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 1/52 (1%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 CI C C CP Q ++ + + + D+ C+ CG C CP Sbjct: 368 CIRCGRCTNSCPMQ-LSPIAIKKAYTVQDAKKLDDLMADLCMGCGTCSFVCP 418 >gi|227496946|ref|ZP_03927198.1| conserved hypothetical protein [Actinomyces urogenitalis DSM 15434] gi|226833554|gb|EEH65937.1| conserved hypothetical protein [Actinomyces urogenitalis DSM 15434] Length = 341 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 22/61 (36%), Gaps = 6/61 (9%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C CP A+ + G + + C C C ACPVDA+ Sbjct: 184 SDCTLCAACTWACPHGALEMADADSGLRGLVQD------LAACRGCQACVGACPVDALHA 237 Query: 121 G 121 G Sbjct: 238 G 238 >gi|223986391|ref|ZP_03636397.1| hypothetical protein HOLDEFILI_03709 [Holdemania filiformis DSM 12042] gi|223961633|gb|EEF66139.1| hypothetical protein HOLDEFILI_03709 [Holdemania filiformis DSM 12042] Length = 57 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 10/60 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ CI C C +CP AI ++ + +D CI CG C CPV AI Sbjct: 6 DKDTCIGCGACAGVCPVGAIALQDDGKAG----------VDEGTCIDCGACVSTCPVSAI 55 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 10/23 (43%), Positives = 11/23 (47%) Query: 101 IKCIYCGLCQEACPVDAIVEGPN 123 CI CG C CPV AI + Sbjct: 8 DTCIGCGACAGVCPVGAIALQDD 30 >gi|209519327|ref|ZP_03268126.1| formate dehydrogenase, alpha subunit [Burkholderia sp. H160] gi|209500211|gb|EEA00268.1| formate dehydrogenase, alpha subunit [Burkholderia sp. H160] Length = 994 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 25/76 (32%), Gaps = 3/76 (3%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCI 104 R + + + +CI C C C T +G + +C+ Sbjct: 189 RKDESNPYFTYDPSKCIVCNRCVRACEETQGTFALTITGRGFESRVAASENQPFMESECV 248 Query: 105 YCGLCQEACPVDAIVE 120 CG C ACP + E Sbjct: 249 SCGACVAACPTATLQE 264 >gi|168261433|ref|ZP_02683406.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|205349505|gb|EDZ36136.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] Length = 287 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 11/73 (15%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C C C CP I + I +C CG C CP A+ Sbjct: 190 PQECRMCGACWRSCPENVIQFDDN-----------TLTIAAARCTGCGGCAAVCPHQALR 238 Query: 120 EGPNFEFATETRQ 132 + E ++ Sbjct: 239 LRFDVEPSSTRHS 251 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 11/50 (22%) Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C +CPAQA ++ G ID +CI CG C CPVDAI Sbjct: 29 CADVCPAQAFSLAQGQVS-----------IDTTRCIACGDCLFVCPVDAI 67 >gi|163856036|ref|YP_001630334.1| ferredoxin [Bordetella petrii DSM 12804] gi|163259764|emb|CAP42065.1| Electron transport complex protein, type B subunit [Bordetella petrii] Length = 213 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 24/70 (34%), Gaps = 10/70 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L E CI C LC CP AI + + + C C LC Sbjct: 76 LTVARIDEAHCIGCTLCIRACPVDAIVGANK----------RMHTVLADWCTGCDLCVAP 125 Query: 113 CPVDAIVEGP 122 CPVD I P Sbjct: 126 CPVDCIDMAP 135 >gi|153953876|ref|YP_001394641.1| hypothetical protein CKL_1251 [Clostridium kluyveri DSM 555] gi|219854491|ref|YP_002471613.1| hypothetical protein CKR_1148 [Clostridium kluyveri NBRC 12016] gi|146346757|gb|EDK33293.1| Conserved hypothetical protein containing a ferredoxin domain [Clostridium kluyveri DSM 555] gi|219568215|dbj|BAH06199.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 273 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 25/125 (20%), Positives = 37/125 (29%), Gaps = 21/125 (16%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRY--PN 58 M I R ++ F+ N P+ K G R P Sbjct: 145 MTIARNFAHSMY------GKFVTGHEIKNLTVKGNKPYRKYYKPRNKEGVPVDIRKVTPK 198 Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C CK+C +CP +I + + + CI CG C + CP A Sbjct: 199 TNDNCTDCKICVNVCPMGSIDFKDVSKLN-------------GICIKCGACIKKCPHGAK 245 Query: 119 VEGPN 123 Sbjct: 246 YYDDE 250 >gi|219670113|ref|YP_002460548.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfitobacterium hafniense DCB-2] gi|219540373|gb|ACL22112.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfitobacterium hafniense DCB-2] Length = 367 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 26/60 (43%), Gaps = 12/60 (20%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 EERC AC C+ CPA AIT+ R ID CI CG C C AI Sbjct: 191 NEERCTACGKCKNWCPASAITVAGFAR------------IDEKLCIGCGECAVTCTFKAI 238 Score = 33.5 bits (75), Expect = 9.4, Method: Composition-based stats. Identities = 8/22 (36%), Positives = 12/22 (54%) Query: 97 DIDMIKCIYCGLCQEACPVDAI 118 ++ +C CG C+ CP AI Sbjct: 189 QVNEERCTACGKCKNWCPASAI 210 >gi|73667997|ref|YP_304012.1| coenzyme F420-reducing hydrogenase subunit gamma [Methanosarcina barkeri str. Fusaro] gi|72395159|gb|AAZ69432.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanosarcina barkeri str. Fusaro] Length = 293 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 28/75 (37%), Gaps = 13/75 (17%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L + C+ C C A CP AIT+E G + CI CG C A Sbjct: 213 LMYDVINQGLCMGCGTCAASCPVHAITLEFGK-----------PQGERDLCIKCGSCYGA 261 Query: 113 CP--VDAIVEGPNFE 125 CP + P FE Sbjct: 262 CPRSFFNLDVIPEFE 276 Score = 38.5 bits (88), Expect = 0.34, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%) Query: 80 IESGPRCHDGTRRTVRYD-IDMIKCIYCGLCQEACPVDAIVE 120 ++ R G + YD I+ C+ CG C +CPV AI Sbjct: 199 MDLAKRGTSGCFCDLMYDVINQGLCMGCGTCAASCPVHAITL 240 >gi|15679689|ref|NP_276806.1| putative ATPase RIL [Methanothermobacter thermautotrophicus str. Delta H] gi|2622826|gb|AAB86167.1| RNase L inhibitor [Methanothermobacter thermautotrophicus str. Delta H] Length = 623 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 1/60 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +RC K C +C + +T + I C CG+C + CP AI Sbjct: 40 DHDRCQP-KKCNYVCIEYCPGVRMDEDTITIDEKTKKPIISEELCSGCGICTKRCPFKAI 98 >gi|332882373|ref|ZP_08450001.1| 4Fe-4S binding domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332679757|gb|EGJ52726.1| 4Fe-4S binding domain protein [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 517 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 28/73 (38%), Gaps = 13/73 (17%) Query: 47 FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 F +A + +C+ C LCE C A I I+ ID +C+ C Sbjct: 232 FLSRYAWLKPVIDTSKCVNCNLCERNCKASCIHIKEHK-------------IDYSRCVAC 278 Query: 107 GLCQEACPVDAIV 119 C + CP AI Sbjct: 279 MNCIDKCPKKAIH 291 Score = 38.5 bits (88), Expect = 0.31, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 2/51 (3%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C C CP+ AI + + R ++ +CI CG C+ CP Sbjct: 451 VECGNCARHCPSGAIQMVPSVSGIPDSPRLPV--VNEERCIGCGSCENLCP 499 Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 33/109 (30%), Gaps = 3/109 (2%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 +K + N C AC+LC + CP + S + Sbjct: 344 EKKIPERKVHLKPAGAQGVHNFASHCTACQLCVSACPNDVLRPSSSIETWMQPEMSYERG 403 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGD 146 +C+ C E CP AI E ++ + E + N D Sbjct: 404 YCRPECVR---CTEVCPNGAIRSLTVAEKSSVQIGHAVFVYENCVVNTD 449 Score = 34.3 bits (77), Expect = 5.8, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 22/91 (24%), Gaps = 4/91 (4%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + S C C +CP AI + Sbjct: 379 CPNDVLRPSSSIETWMQPEMSYERGYCRPECVRCTEVCPNGAIRSLTVAEKSSVQIGHAV 438 Query: 96 Y----DIDMIKCIYCGLCQEACPVDAIVEGP 122 + + + CG C CP AI P Sbjct: 439 FVYENCVVNTDGVECGNCARHCPSGAIQMVP 469 >gi|320353705|ref|YP_004195044.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Desulfobulbus propionicus DSM 2032] gi|320122207|gb|ADW17753.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Desulfobulbus propionicus DSM 2032] Length = 683 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 20/64 (31%), Gaps = 5/64 (7%) Query: 59 GEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 +C+ C C C AI D+ +C+ CG C CP Sbjct: 146 DPNKCVLCGDCVRFCDEIQSIGAIDFAFRGHDAMVLPAFGH-DLGTTECVNCGQCASVCP 204 Query: 115 VDAI 118 A+ Sbjct: 205 TGAL 208 >gi|319937123|ref|ZP_08011530.1| pyruvate-flavodoxin oxidoreductase [Coprobacillus sp. 29_1] gi|319807489|gb|EFW04082.1| pyruvate-flavodoxin oxidoreductase [Coprobacillus sp. 29_1] Length = 1172 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 25/91 (27%), Gaps = 22/91 (24%) Query: 57 PNGEERCIACKLCEAICPA------------------QAITIESGPRCHDGTRRTVRYDI 98 +E CI C C +CP P + R + Sbjct: 682 RWEKENCIQCNNCVMVCPHATIRAFLLNDEEMNALPEDIHDDVLKPIGKNVDGLAYRIQV 741 Query: 99 DMIKCIYCGLCQEACP----VDAIVEGPNFE 125 C+ CGLC CP A+ P E Sbjct: 742 SPDNCVGCGLCVTECPGKAGKKALTMVPVKE 772 >gi|318041114|ref|ZP_07973070.1| pyruvate oxidoreductase [Synechococcus sp. CB0101] Length = 1180 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 32/114 (28%), Gaps = 24/114 (21%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI----------------TIESGPRC 86 TS + A + + C+ C C +CP I + R Sbjct: 676 TSQWEKRNIAEQVPVWEPDLCVQCGKCVMVCPHAVIRAKVAEPEALAAAPEGFRSAPARD 735 Query: 87 HDGTRRTVRYDIDMIKCIYCGLCQEACPVD--------AIVEGPNFEFATETRQ 132 + + + C C LC E CP A+ P + RQ Sbjct: 736 AHWSGQRFTIQVSAEDCTGCNLCVEVCPARDRREPRRKALNMAPQRPLREQNRQ 789 >gi|317498714|ref|ZP_07957005.1| iron only hydrogenase large subunit domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] gi|316894008|gb|EFV16199.1| iron only hydrogenase large subunit domain-containing protein [Lachnospiraceae bacterium 5_1_63FAA] Length = 570 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 31/90 (34%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93 ++ P++K + + L R + +C+ C I SG + Sbjct: 119 VDSPYKKEICIEEWDTRYPLVRDASKCVKCMRCIQVCDKIQGMHIWDVSGTGARTTVGVS 178 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 DI C CG C CP A+ E + Sbjct: 179 ENRDIKTADCALCGQCITHCPTGALRERDD 208 >gi|253996419|ref|YP_003048483.1| cyclic nucleotide-binding protein [Methylotenera mobilis JLW8] gi|253983098|gb|ACT47956.1| cyclic nucleotide-binding protein [Methylotenera mobilis JLW8] Length = 824 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 6/57 (10%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 +C+ CE + ++ R G CI CG CQ+ CP D I Sbjct: 690 TSCRHCEHPHCMKDCPPDAIHRAPHGEVYID------DSCIGCGNCQQNCPYDVIQM 740 Score = 35.1 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 19/94 (20%), Positives = 26/94 (27%), Gaps = 21/94 (22%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 R H + CI C C+ CP I + + + + I Sbjct: 705 PPDAIHRAPHGEVYIDD---SCIGCGNCQQNCPYDVIQMAVIQDQPEQSLWQMLLGIRPK 761 Query: 102 ------------KCIYCG------LCQEACPVDA 117 KC C +C ACPV A Sbjct: 762 QVASTNNTKVAVKCDMCKDIADGPVCVRACPVGA 795 >gi|210610147|ref|ZP_03288284.1| hypothetical protein CLONEX_00470 [Clostridium nexile DSM 1787] gi|210152607|gb|EEA83613.1| hypothetical protein CLONEX_00470 [Clostridium nexile DSM 1787] Length = 590 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 3/78 (3%) Query: 59 GEERCIACKLCEAIC---PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 +CI C C +C + I G + I+ C CG C CPV Sbjct: 141 DSSKCIKCMRCIQVCDKVQSLHIWDVEGTGSRTTVNVSGHKTIEESACSLCGQCVTHCPV 200 Query: 116 DAIVEGPNFEFATETRQE 133 A+ E + E E + Sbjct: 201 GALRERNDTEKVWEALSD 218 >gi|163644640|gb|ABY28313.1| putative reductive dehalogenase [Dehalococcoides sp. enrichment culture clone KS24(KSRdA09)] Length = 468 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 21/60 (35%), Gaps = 3/60 (5%) Query: 60 EERCIACKLCEAICPAQAITIES---GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + C C +C CP AI + ++ C +C +CQ CP + Sbjct: 352 RKFCYTCGICADACPFGAIQTGDPSFEGYKPWMNNGYEAWRVNYENCTHCPVCQGTCPFN 411 Score = 35.1 bits (79), Expect = 3.6, Method: Composition-based stats. Identities = 10/20 (50%), Positives = 12/20 (60%) Query: 103 CIYCGLCQEACPVDAIVEGP 122 C CG+C +ACP AI G Sbjct: 355 CYTCGICADACPFGAIQTGD 374 >gi|160893745|ref|ZP_02074529.1| hypothetical protein CLOL250_01299 [Clostridium sp. L2-50] gi|156864730|gb|EDO58161.1| hypothetical protein CLOL250_01299 [Clostridium sp. L2-50] Length = 561 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 3/68 (4%) Query: 59 GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQEACPV 115 +CI C C C Q + + + +D + C+ CG C CP Sbjct: 141 DPNKCILCGDCVRTCDEIQGLGVIDFAFRGSKMKVQPAFDKPLAETDCVGCGQCAVVCPT 200 Query: 116 DAIVEGPN 123 AI N Sbjct: 201 AAISIRTN 208 Score = 34.7 bits (78), Expect = 4.9, Method: Composition-based stats. Identities = 13/76 (17%), Positives = 21/76 (27%), Gaps = 8/76 (10%) Query: 46 RFRGEHALRRYPNGEERCIAC---KLCE-----AICPAQAITIESGPRCHDGTRRTVRYD 97 ++R + C C +C A+ + + + Sbjct: 80 QYRKLIIELLLSSHCRDCTTCQKNGMCALQSLAYKVGVHAVRFLNNKKEEKIDMSSPSIV 139 Query: 98 IDMIKCIYCGLCQEAC 113 D KCI CG C C Sbjct: 140 RDPNKCILCGDCVRTC 155 >gi|197118878|ref|YP_002139305.1| aldo/keto reductase family oxidoreductase [Geobacter bemidjiensis Bem] gi|197088238|gb|ACH39509.1| oxidoreductase, aldo/keto reductase family [Geobacter bemidjiensis Bem] Length = 316 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 20/57 (35%), Gaps = 11/57 (19%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C C C A+ + G +D +CI CG C ACP I Sbjct: 268 FCKGCGACVPACTNDALRLVDGKAV-----------VDEAECILCGYCGAACPEFMI 313 >gi|162605692|ref|XP_001713361.1| RNase L inhibitor [Guillardia theta] gi|13794293|gb|AAK39670.1|AF083031_27 RNase L inhibitor [Guillardia theta] Length = 598 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 21/56 (37%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C ++G C +I I CI CG+C + CP DAI Sbjct: 24 NKCNKECKKNCPVEKAGKLCIKIEDSNNIVNIHEINCIGCGICVKKCPYDAIKIIN 79 >gi|48477969|ref|YP_023675.1| ferredoxin [Picrophilus torridus DSM 9790] gi|48430617|gb|AAT43482.1| ferredoxin [Picrophilus torridus DSM 9790] Length = 70 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 23/60 (38%), Gaps = 11/60 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C C +CP AI ++ DI+ KCI CG C CP AI Sbjct: 12 DRSLCNYCGACVGMCPTDAIFMDE-----------TVIDINEEKCIKCGFCVVGCPTGAI 60 >gi|329955641|ref|ZP_08296549.1| 4Fe-4S binding domain protein [Bacteroides clarus YIT 12056] gi|328526044|gb|EGF53068.1| 4Fe-4S binding domain protein [Bacteroides clarus YIT 12056] Length = 277 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 22/76 (28%), Gaps = 12/76 (15%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G R E C C C A CPA AI KCI C Sbjct: 196 GVPTPRIPAVDAELCNHCGYCAAHCPAGAIAKGDECNTD------------AEKCIRCCA 243 Query: 109 CQEACPVDAIVEGPNF 124 C + CP A F Sbjct: 244 CVKGCPQKARTFDTPF 259 >gi|327310274|ref|YP_004337171.1| indolepyruvate ferredoxin oxidoreductase subunit alpha [Thermoproteus uzoniensis 768-20] gi|326946753|gb|AEA11859.1| indolepyruvate ferredoxin oxidoreductase alpha subunit [Thermoproteus uzoniensis 768-20] Length = 595 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 10/74 (13%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R ++ ++C +C +C + AI + ID C C Sbjct: 517 RSGFKPPKFYVVADKCRSCGICYNVLKCYAIAKLPDGKA----------WIDPSLCSGCS 566 Query: 108 LCQEACPVDAIVEG 121 +C + CP DAI Sbjct: 567 MCAQVCPYDAIKPT 580 >gi|313113434|ref|ZP_07799023.1| 4Fe-4S binding domain protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310624161|gb|EFQ07527.1| 4Fe-4S binding domain protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 296 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 15/67 (22%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L + +C++C C C + + +CI CG+C +A Sbjct: 229 LFQMRVDTHKCVSCGACAKACKMD---------------VDITKTPNHAECIRCGMCMKA 273 Query: 113 CPVDAIV 119 CP DAI Sbjct: 274 CPTDAIQ 280 >gi|306821642|ref|ZP_07455240.1| ferredoxin hydrogenase [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550387|gb|EFM38380.1| ferredoxin hydrogenase [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 578 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 27/69 (39%), Gaps = 5/69 (7%) Query: 59 GEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 +CI CK CE +C A+T + G + + C +CG C CP Sbjct: 147 DANKCILCKRCETMCNEIQTVGALT-DVGRGFNTYVGSAFNDAMYETTCTFCGQCLAVCP 205 Query: 115 VDAIVEGPN 123 A+ E N Sbjct: 206 TGALTEVNN 214 >gi|262089319|gb|ACY24539.1| ferredoxin [uncultured crenarchaeote 76h13] Length = 207 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 13/62 (20%), Positives = 21/62 (33%), Gaps = 2/62 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C+A C CP P ++ + I CI+C C+ CP + Sbjct: 143 DFDICVADGACIEACPVNVYEWLDTPGHPASEKKP--FMIREKDCIFCMACENVCPPQCV 200 Query: 119 VE 120 Sbjct: 201 KI 202 >gi|289523003|ref|ZP_06439857.1| putative iron-sulfur cluster-binding protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503546|gb|EFD24710.1| putative iron-sulfur cluster-binding protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 382 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 32/85 (37%), Gaps = 15/85 (17%) Query: 43 TSPRFRGEHALRRY---PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 RG EE+C+ C +C +CP +AI ++ PR I+ Sbjct: 303 LPTWLRGWTHRWVALSPRLREEKCVKCGICADVCPRKAIRMDPLPR------------IN 350 Query: 100 MIKCIYCGLCQEACPVDAIVEGPNF 124 C+ C C E CP A+ N Sbjct: 351 RAMCVKCLCCHEMCPTGAMEVHENM 375 >gi|261403601|ref|YP_003247825.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus vulcanius M7] gi|261370594|gb|ACX73343.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus vulcanius M7] Length = 391 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 38/108 (35%), Gaps = 14/108 (12%) Query: 29 KAKTTINYPFEKGSTSPRFRGEHALRRYP-------------NGEERCIACKLCEAICPA 75 K K + P E + G + +C+ C +C CP Sbjct: 121 KPKKEVKAPKEPIVVTDDCVGCGVCVPECPVGAITLEDGKAVIDKSKCVYCSICAQTCPW 180 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 AI +G + ++++D KC+YC C E CP D I N Sbjct: 181 NAIF-VAGKIPKKRRKEVKKFEVDAEKCVYCLKCVEICPGDMIKVDEN 227 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 3/73 (4%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 + C C C +CP A+ ++ R + KC CG C ACP+ Sbjct: 26 DIDSFRVCDLCMECVMVCPTGALM---EEEIEVNGKKLKRVNYLAHKCEKCGACANACPI 82 Query: 116 DAIVEGPNFEFAT 128 F ++ Sbjct: 83 GIKRVDDTFPYSK 95 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 3/54 (5%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 CI C C CP A+ + + + R + C CG C E CP Sbjct: 301 RMCIVCGACTVACPTGALKL---GKIEHNGKEYNRIEFSPYLCDKCGKCVEVCP 351 Score = 39.3 bits (90), Expect = 0.16, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID-MIKCIYCGLCQEACP 114 +P + C+ C+ C +CP + I+I + + I C+ CG+C CP Sbjct: 91 FPYSKGHCVLCQKCIDVCPIEIISIPGVIDKPKKEVKAPKEPIVVTDDCVGCGVCVPECP 150 Query: 115 VDAIVEGP 122 V AI Sbjct: 151 VGAITLED 158 >gi|256839950|ref|ZP_05545459.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides sp. D13] gi|256738880|gb|EEU52205.1| NADH:ubiquinone oxidoreductase subunit [Parabacteroides sp. D13] Length = 596 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 5/64 (7%) Query: 59 GEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 +CI C+ CE +C A+T + + R D+ C YCG C CP Sbjct: 148 NMNKCIMCRRCETMCNTIQTVGALTAVNRGFNAAVSTAFER-DMAGSTCSYCGQCVSVCP 206 Query: 115 VDAI 118 V+A+ Sbjct: 207 VNAL 210 >gi|261402831|ref|YP_003247055.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus vulcanius M7] gi|261369824|gb|ACX72573.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus vulcanius M7] Length = 391 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 38/108 (35%), Gaps = 14/108 (12%) Query: 29 KAKTTINYPFEKGSTSPRFRGEHALRRYP-------------NGEERCIACKLCEAICPA 75 K K + P E + G + +C+ C +C CP Sbjct: 121 KPKKEVKAPKEPIVVTDDCVGCGVCVPECPVGAITLEDGKAVIDKSKCVYCSICAQTCPW 180 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 AI +G + ++++D KC+YC C E CP D I N Sbjct: 181 NAIF-VAGKIPKKRRKEVKKFEVDAEKCVYCLKCVEICPGDMIKVDEN 227 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 3/73 (4%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 + C C C +CP A+ ++ R + KC CG C ACP+ Sbjct: 26 DIDSFRVCDLCMECVMVCPTGALM---EEEIEVNGKKLKRVNYLAHKCEKCGACANACPI 82 Query: 116 DAIVEGPNFEFAT 128 F ++ Sbjct: 83 GIKRVDDTFPYSK 95 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 3/54 (5%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 CI C C CP A+ + + + R + C CG C E CP Sbjct: 301 RMCIVCGACTVACPTGALKL---GKIEHNGKEYNRIEFSPYLCDKCGKCVEVCP 351 Score = 39.3 bits (90), Expect = 0.16, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID-MIKCIYCGLCQEACP 114 +P + C+ C+ C +CP + I+I + + I C+ CG+C CP Sbjct: 91 FPYSKGHCVLCQKCIDVCPIEIISIPGVIDKPKKEVKAPKEPIVVTDDCVGCGVCVPECP 150 Query: 115 VDAIVEGP 122 V AI Sbjct: 151 VGAITLED 158 >gi|240948591|ref|ZP_04752964.1| electron transport complex protein RnfB [Actinobacillus minor NM305] gi|240297099|gb|EER47670.1| electron transport complex protein RnfB [Actinobacillus minor NM305] Length = 203 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 21/64 (32%), Gaps = 10/64 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E+ CI C C CP AI + + + C C LC CP + Sbjct: 110 FIHEDMCIGCTKCIQACPVDAIIGTNK----------AMHTVIADLCTGCELCIAPCPTN 159 Query: 117 AIVE 120 I Sbjct: 160 CIEM 163 Score = 38.2 bits (87), Expect = 0.35, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 5/53 (9%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + T+E I CI C C +ACPVDAI+ Sbjct: 88 ADLMGVDVPTMEGEEAPET-----KVAFIHEDMCIGCTKCIQACPVDAIIGTN 135 >gi|288573773|ref|ZP_06392130.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569514|gb|EFC91071.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 272 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 12/59 (20%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 E C+ C C A+CP A+ P DG C +C C +ACP A Sbjct: 189 DVEMCVHCGKCAAVCPVGAVDS-KDPNVTDGVA-----------CTFCCACVKACPTGA 235 Score = 35.1 bits (79), Expect = 3.8, Method: Composition-based stats. Identities = 8/18 (44%), Positives = 11/18 (61%) Query: 101 IKCIYCGLCQEACPVDAI 118 C++CG C CPV A+ Sbjct: 191 EMCVHCGKCAAVCPVGAV 208 >gi|256829736|ref|YP_003158464.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfomicrobium baculatum DSM 4028] gi|256578912|gb|ACU90048.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfomicrobium baculatum DSM 4028] Length = 398 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 1/55 (1%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 CI C C +CPA+ + R C+ CG+C CP Sbjct: 315 PNPCINCGECVLVCPARIQPGMISRYAEFNIFESTRSQHVEA-CLECGMCTFVCP 368 Score = 34.3 bits (77), Expect = 6.2, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 13/42 (30%), Gaps = 4/42 (9%) Query: 98 IDMIKCIYCGLCQEACPVD----AIVEGPNFEFATETRQELY 135 + CI CG C CP I F TR + Sbjct: 313 VQPNPCINCGECVLVCPARIQPGMISRYAEFNIFESTRSQHV 354 >gi|171058237|ref|YP_001790586.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein [Leptothrix cholodnii SP-6] gi|170775682|gb|ACB33821.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Leptothrix cholodnii SP-6] Length = 438 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 27/78 (34%), Gaps = 14/78 (17%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 RCI C CP A+ + G ++ CI G CQ ACP Sbjct: 48 HPVIDPARCIGSGSCTKACPEDALGMVGGKAVL----------VNASACIGHGACQAACP 97 Query: 115 VDAIVEGPNFEFATETRQ 132 DAI F TE R Sbjct: 98 FDAISLV----FGTEKRG 111 >gi|116747465|ref|YP_844152.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116696529|gb|ABK15717.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Syntrophobacter fumaroxidans MPOB] Length = 1116 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 21/59 (35%), Gaps = 6/59 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 E RC C C CP QAI+ +D C CG C CP DA Sbjct: 1044 DESRCRGCGRCLQACPYQAISFRKNGLGG------SHAVVDEALCKGCGNCISVCPSDA 1096 Score = 37.0 bits (84), Expect = 0.84, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 8/65 (12%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 LR N RCI P + +I+ P+ R +D +C CG C E Sbjct: 69 LRILKNPRIRCI--------LPGEVQSIKHTPQGFCARYRKNPTFVDPERCTLCGRCAEV 120 Query: 113 CPVDA 117 CP A Sbjct: 121 CPAAA 125 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 11/26 (42%), Positives = 14/26 (53%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPN 123 +D +C CG C +ACP AI N Sbjct: 1043 VDESRCRGCGRCLQACPYQAISFRKN 1068 >gi|90410365|ref|ZP_01218381.1| hypothetical NADPH-dependent glutamate synthase [Photobacterium profundum 3TCK] gi|90328606|gb|EAS44890.1| hypothetical NADPH-dependent glutamate synthase [Photobacterium profundum 3TCK] Length = 543 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 21/59 (35%), Gaps = 9/59 (15%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C CP AIT ++ Y +D KC C C CP AI Sbjct: 488 NCFECNGCLGACPHGAITYLG---------KSKGYKVDYDKCTGCEACYSQCPCHAIEM 537 >gi|20094676|ref|NP_614523.1| MinD family protein [Methanopyrus kandleri AV19] gi|19887840|gb|AAM02453.1| MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Methanopyrus kandleri AV19] Length = 262 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 12/61 (19%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 E+ C C C +C A+ +D+D C CGLC E+CP A Sbjct: 61 EDEDACDLCGTCARVCAPGALV------------VGRSWDLDPDLCHGCGLCIESCPNGA 108 Query: 118 I 118 + Sbjct: 109 L 109 >gi|15922648|ref|NP_378317.1| hypothetical protein ST2316 [Sulfolobus tokodaii str. 7] gi|15623438|dbj|BAB67426.1| 627aa long hypothetical protein [Sulfolobus tokodaii str. 7] Length = 627 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 20/111 (18%), Positives = 32/111 (28%), Gaps = 12/111 (10%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 N CI C C +CP T I C CG C + CP + Sbjct: 286 ENNLNGCIMCGKCVDVCPYVEYTKSKIYSPLGFYVLQSLGSSVQINCHMCGKCVDVCPAN 345 Query: 117 AIVEGPNFEFATETRQELYYDKERLLN-----------NGDRWESEIVRNI 156 + + A + +L R+E I++++ Sbjct: 346 LDIISDISKSAVYDISN-VRTENKLKELKSEKVILITPISSRFEERILKSL 395 >gi|116620502|ref|YP_822658.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Candidatus Solibacter usitatus Ellin6076] gi|116223664|gb|ABJ82373.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Candidatus Solibacter usitatus Ellin6076] Length = 383 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 11/62 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C +C CE C AIT G +D +CI C LC CP A+ Sbjct: 290 DDAACESCGACEMRCQMDAITSPEGKAV-----------VDRARCIGCALCVSTCPSGAL 338 Query: 119 VE 120 Sbjct: 339 RL 340 >gi|332664441|ref|YP_004447229.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Haliscomenobacter hydrossis DSM 1100] gi|332333255|gb|AEE50356.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Haliscomenobacter hydrossis DSM 1100] Length = 529 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 9/53 (16%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 +CI+C C C R DI C+ CG+C CP Sbjct: 451 QCISCGNCSTYCEMGIDVRAYAQRGQ---------DIVRASCVGCGICAAVCP 494 >gi|328953059|ref|YP_004370393.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Desulfobacca acetoxidans DSM 11109] gi|328453383|gb|AEB09212.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Desulfobacca acetoxidans DSM 11109] Length = 97 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 29/77 (37%), Gaps = 10/77 (12%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G+ + + RCI C +C +CP AI E +D+D C CG+ Sbjct: 31 GDWRSQHPVWTKSRCIRCGVCWTVCPEPAIIQEPNG----------YFDMDPDYCKGCGI 80 Query: 109 CQEACPVDAIVEGPNFE 125 C C I P E Sbjct: 81 CARECVTGCITMVPEEE 97 >gi|326431801|gb|EGD77371.1| ABC transporter ABCE1 [Salpingoeca sp. ATCC 50818] Length = 602 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 1/64 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++C K C C + G C + T + +I + CI CG+C + CP AI Sbjct: 12 NHDKCKP-KRCRQECKRSCPVVRMGKMCIEVTPTSKIANISEVLCIGCGICVKKCPFGAI 70 Query: 119 VEGP 122 Sbjct: 71 NIIN 74 >gi|310826460|ref|YP_003958817.1| Fe-S cluster domain protein [Eubacterium limosum KIST612] gi|308738194|gb|ADO35854.1| Fe-S cluster domain protein [Eubacterium limosum KIST612] Length = 452 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 11/65 (16%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + +++C+ C C CP AI + G I KCI CG C Sbjct: 5 MHSVYLDKDKCLGCTTCLRSCPTGAIRVREGKA-----------KIIESKCIDCGECIRV 53 Query: 113 CPVDA 117 CP A Sbjct: 54 CPHHA 58 >gi|304317899|ref|YP_003853044.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302779401|gb|ADL69960.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 372 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 25/58 (43%), Gaps = 11/58 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C AC+ C CP AIT+ G ID KCI CG C C DAI Sbjct: 193 KNCTACQTCIKNCPEDAITLVDGKAY-----------IDPDKCIGCGECITMCQYDAI 239 >gi|294867463|ref|XP_002765111.1| pyruvate:ferredoxin oxidoreductase/NADPH-cytochrome P450, putative [Perkinsus marinus ATCC 50983] gi|239865033|gb|EEQ97828.1| pyruvate:ferredoxin oxidoreductase/NADPH-cytochrome P450, putative [Perkinsus marinus ATCC 50983] Length = 1814 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 26/117 (22%), Positives = 33/117 (28%), Gaps = 30/117 (25%) Query: 51 HALRRYPNGEERCIACKLCEAICPA---------------QAITIESGPRCHDGTRRTVR 95 AL ++C C C CP Q T +S + Sbjct: 723 VALEVPEVDMDKCTQCNTCSMACPHAVIRPFLLSQDEVDRQPPTFDSRKAKGGAEVAGLY 782 Query: 96 YDID--MIKCIYCGLCQEACPVDAIVEG------------PNFEFATETRQELYYDK 138 Y I C C +C ACP DA+ F A R E +DK Sbjct: 783 YRIQVSPYDCTGCEVCVNACPDDALRMVTLADTHEASSANWEFAVALPDRSER-FDK 838 >gi|288575165|ref|ZP_06393522.1| Indolepyruvate ferredoxin oxidoreductase [Dethiosulfovibrio peptidovorans DSM 11002] gi|288570906|gb|EFC92463.1| Indolepyruvate ferredoxin oxidoreductase [Dethiosulfovibrio peptidovorans DSM 11002] Length = 620 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 28/97 (28%), Gaps = 24/97 (24%) Query: 22 LCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 + R+ T+ P +R G CI C + QA Sbjct: 541 IVFRH---PCITM------LKVKPEYRPVKVDPSVCIGCGICIRDFNCPGLVWDQAT--- 588 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + +D C+ CG+C CP AI Sbjct: 589 ------------GKAMVDDRYCVNCGVCVAVCPKGAI 613 >gi|73541017|ref|YP_295537.1| benzoyl-CoA oxygenase, component A [Ralstonia eutropha JMP134] gi|72118430|gb|AAZ60693.1| benzoyl-CoA oxygenase, component A [Ralstonia eutropha JMP134] Length = 417 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 25/69 (36%), Gaps = 11/69 (15%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 ++++ E CI C CE CP AIT + Y + C C C Sbjct: 4 PEMIKQHLIDPEICIRCNTCEDTCPIDAITHDE-----------RNYVVKADVCNACNAC 52 Query: 110 QEACPVDAI 118 CP AI Sbjct: 53 LSPCPTGAI 61 Score = 33.5 bits (75), Expect = 8.9, Method: Composition-based stats. Identities = 11/23 (47%), Positives = 14/23 (60%) Query: 98 IDMIKCIYCGLCQEACPVDAIVE 120 ID CI C C++ CP+DAI Sbjct: 12 IDPEICIRCNTCEDTCPIDAITH 34 >gi|15603461|ref|NP_246535.1| quinol dehydrogenase membrane component [Pasteurella multocida subsp. multocida str. Pm70] gi|12721992|gb|AAK03680.1| NapH [Pasteurella multocida subsp. multocida str. Pm70] Length = 291 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 5/76 (6%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 R ++C C C +CP R +++ + CI CG C + Sbjct: 216 FRIKVEHRQQCDNCMDCYNVCP-----EPQVLRDPLHAKKSESPLVLSKDCISCGRCIDV 270 Query: 113 CPVDAIVEGPNFEFAT 128 CP + F + Sbjct: 271 CPEKVFIFTTRFNHSV 286 >gi|327401007|ref|YP_004341846.1| acetyl-CoA decarbonylase/synthase complex subunit alpha [Archaeoglobus veneficus SNP6] gi|327316515|gb|AEA47131.1| Acetyl-CoA decarbonylase/synthase complex subunit alpha [Archaeoglobus veneficus SNP6] Length = 797 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 29/86 (33%), Gaps = 6/86 (6%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 P F E L+ + RC C C CP ++ DG + CI Sbjct: 391 PPFMSEEELKTEID---RCTGCMNCVFACPHNLRIDKAMSAAKDGD--FSVFKTVEDSCI 445 Query: 105 YCGLCQEACPVDAIVEGPNFEFATET 130 CG C++ CP I A+ Sbjct: 446 ACGRCEQVCP-RDIRIVDVIMKASYD 470 >gi|302391065|ref|YP_003826885.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Acetohalobium arabaticum DSM 5501] gi|302203142|gb|ADL11820.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Acetohalobium arabaticum DSM 5501] Length = 583 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 24/72 (33%), Gaps = 3/72 (4%) Query: 55 RYPNGEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDIDMI--KCIYCGLCQE 111 +CI C C +C Q + + T +D+ C CG C Sbjct: 148 CLERDPNKCILCGRCVRVCNEIQEVAALDFTERGFNSTVTTAFDLPQSEINCTNCGQCAV 207 Query: 112 ACPVDAIVEGPN 123 CPV AI E Sbjct: 208 VCPVGAITEVSE 219 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 21/74 (28%), Gaps = 8/74 (10%) Query: 48 RGEHALRRYPNGEERCIAC---KLCE-----AICPAQAITIESGPRCHDGTRRTVRYDID 99 R + N C+ C CE I E R H + D Sbjct: 93 RRMNVELLLANHPNECLTCDRNGTCELQQIAYDLGVHDIRFEGDTRDHPIDNDGPCLERD 152 Query: 100 MIKCIYCGLCQEAC 113 KCI CG C C Sbjct: 153 PNKCILCGRCVRVC 166 >gi|301310274|ref|ZP_07216213.1| putative [Fe] hydrogenase, large subunit HymC [Bacteroides sp. 20_3] gi|300831848|gb|EFK62479.1| putative [Fe] hydrogenase, large subunit HymC [Bacteroides sp. 20_3] Length = 596 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 5/64 (7%) Query: 59 GEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 +CI C+ CE +C A+T + + R D+ C YCG C CP Sbjct: 148 NMNKCIMCRRCETMCNTIQTVGALTAVNRGFNAAVSTAFER-DMAGSTCSYCGQCVSVCP 206 Query: 115 VDAI 118 V+A+ Sbjct: 207 VNAL 210 >gi|262381802|ref|ZP_06074940.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_33B] gi|262296979|gb|EEY84909.1| NADH:ubiquinone oxidoreductase subunit [Bacteroides sp. 2_1_33B] Length = 596 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 5/64 (7%) Query: 59 GEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 +CI C+ CE +C A+T + + R D+ C YCG C CP Sbjct: 148 NMNKCIMCRRCETMCNTIQTVGALTAVNRGFNAAVSTAFER-DMAGSTCSYCGQCVSVCP 206 Query: 115 VDAI 118 V+A+ Sbjct: 207 VNAL 210 >gi|255013975|ref|ZP_05286101.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. 2_1_7] Length = 301 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 11/62 (17%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 ++CI C C +CP A+T+ D C CG C E CP A+ Sbjct: 49 RKKCIGCGACVDVCPTGALTLTEAGIVTD-----------RSLCRTCGRCAEVCPTLAME 97 Query: 120 EG 121 Sbjct: 98 MS 99 >gi|229495879|ref|ZP_04389605.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Porphyromonas endodontalis ATCC 35406] gi|229317192|gb|EEN83099.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Porphyromonas endodontalis ATCC 35406] Length = 1181 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 27/83 (32%), Gaps = 17/83 (20%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA----------------QAITIESGPRCHDGTR 91 RG E CI C C +CP T+E+ + Sbjct: 676 RGVATFVPVWK-MENCIQCNQCAFVCPHATIRPFLLDAAEKNTTGVATLEAMGKGLKEAG 734 Query: 92 RTVRYDIDMIKCIYCGLCQEACP 114 R +D++ C+ CG C CP Sbjct: 735 LGFRIQVDVLDCLGCGNCVNVCP 757 >gi|229037740|ref|ZP_04189575.1| Dihydroorotate dehydrogenase 1 [Bacillus cereus AH1271] gi|228727594|gb|EEL78735.1| Dihydroorotate dehydrogenase 1 [Bacillus cereus AH1271] Length = 416 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 4/63 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117 ++ CI C C C + G++ C+ C LC CPVD A Sbjct: 338 NDDVCIKCNKCYISCEDTSHQCIEILTNDKGSKFLKV---REEDCVGCNLCSIVCPVDGA 394 Query: 118 IVE 120 I Sbjct: 395 IDM 397 >gi|298531053|ref|ZP_07018454.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfonatronospira thiodismutans ASO3-1] gi|298509076|gb|EFI32981.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfonatronospira thiodismutans ASO3-1] Length = 356 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 36/123 (29%), Gaps = 22/123 (17%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRY---PNGEERCIACKLCEAICPAQAITIESGPRC 86 K + E F A R + C+ C+ C CP E Sbjct: 112 RKIQCMHCLEPACAHSCFVKAFAKRPDGAVTYDPKVCVGCRYCMMACPFNIPAYE----- 166 Query: 87 HDGTRRTVRYDIDMIKCIYCG---------LCQEACPVDAIVEGPNFEFATETRQELYYD 137 + D + KC +C C E CP A+ E E R+ + + Sbjct: 167 -----YHIALDPLVTKCTFCEHRLKEDREPACVEICPTRAMYFSTREEVLKEARKRIVNN 221 Query: 138 KER 140 ++ Sbjct: 222 PDK 224 >gi|260821394|ref|XP_002606018.1| hypothetical protein BRAFLDRAFT_129513 [Branchiostoma floridae] gi|229291355|gb|EEN62028.1| hypothetical protein BRAFLDRAFT_129513 [Branchiostoma floridae] Length = 1044 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 23/68 (33%), Gaps = 14/68 (20%) Query: 59 GEERCIACKLCEAICP---AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP- 114 EE CI C C C QAIT ++ C C LC CP Sbjct: 954 DEEMCINCGKCYMTCNDSGYQAITFDAETHLPH----------VTDDCTGCTLCVSVCPI 1003 Query: 115 VDAIVEGP 122 +D I P Sbjct: 1004 IDCIQMVP 1011 >gi|76666607|emb|CAJ31128.1| Iron-sulfur-binding protein, glutamate synthase subunit (DsrL/GltD) [uncultured sulfate-reducing bacterium] Length = 576 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 19/61 (31%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 RC++C C + + Y I + KC C C E CP Sbjct: 513 EETTRCMSCGRCFGCENCWMYCQNTCFVKEQKPKPGAFYSIILEKCDGCKKCWEECPCGF 572 Query: 118 I 118 I Sbjct: 573 I 573 >gi|330835410|ref|YP_004410138.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Metallosphaera cuprina Ar-4] gi|329567549|gb|AEB95654.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Metallosphaera cuprina Ar-4] Length = 582 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 19/57 (33%), Gaps = 1/57 (1%) Query: 60 EERCIACKLCEAICPAQAITIESGPRC-HDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 CI C C +CP + + D C +CG C+ CPV Sbjct: 250 FSGCILCGKCVYVCPHVEQRDDKNYSPLGFFISLALNNQTDYANCHFCGKCENVCPV 306 Score = 33.5 bits (75), Expect = 8.8, Method: Composition-based stats. Identities = 8/22 (36%), Positives = 10/22 (45%) Query: 103 CIYCGLCQEACPVDAIVEGPNF 124 CI CG C CP + N+ Sbjct: 253 CILCGKCVYVCPHVEQRDDKNY 274 >gi|300853895|ref|YP_003778879.1| Fe-Fe hydrogenase 2 [Clostridium ljungdahlii DSM 13528] gi|300434010|gb|ADK13777.1| Fe-Fe hydrogenase 2 [Clostridium ljungdahlii DSM 13528] Length = 462 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 10/59 (16%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 EE C C+ C +CP AI E G I+ KC+ CG C + C Sbjct: 7 MINIDEELCTGCRRCADVCPVDAIEGEQGKPQK----------INTEKCVMCGQCIQVC 55 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 11/24 (45%), Positives = 13/24 (54%) Query: 95 RYDIDMIKCIYCGLCQEACPVDAI 118 +ID C C C + CPVDAI Sbjct: 7 MINIDEELCTGCRRCADVCPVDAI 30 >gi|269962090|ref|ZP_06176444.1| RnfC-related protein [Vibrio harveyi 1DA3] gi|269833174|gb|EEZ87279.1| RnfC-related protein [Vibrio harveyi 1DA3] Length = 910 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 1/53 (1%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 CI C C CPA + + ++++ CI CG C CP Sbjct: 377 ECIRCSQCAEACPAS-LLPQQLQWYAKSQEYEKLEELNLKDCIECGACAFVCP 428 >gi|255526305|ref|ZP_05393221.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium carboxidivorans P7] gi|296185227|ref|ZP_06853637.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7] gi|255510018|gb|EET86342.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium carboxidivorans P7] gi|296050061|gb|EFG89485.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7] Length = 417 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 9/62 (14%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E CI C C CP AI I+ T + D C+ CG+C CP +I Sbjct: 290 ESCIGCGKCAKACPIDAIKIDP---------VTKKARTDENICLGCGICVRNCPKKSIYL 340 Query: 121 GP 122 Sbjct: 341 KH 342 Score = 37.0 bits (84), Expect = 0.94, Method: Composition-based stats. Identities = 12/26 (46%), Positives = 14/26 (53%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGP 122 CI CG C +ACP+DAI P Sbjct: 286 QFIEESCIGCGKCAKACPIDAIKIDP 311 >gi|297544314|ref|YP_003676616.1| hydrogenase, Fe-only [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842089|gb|ADH60605.1| hydrogenase, Fe-only [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 581 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 3/67 (4%) Query: 59 GEERCIACKLCEAIC-PAQAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPV 115 +C+ C+ C A+C Q + T + + CI CG C E CPV Sbjct: 144 DPNKCVLCRRCVAVCSEVQNVFAIGMVNRGFKTMVAPSFGRSLKDSPCISCGQCIEVCPV 203 Query: 116 DAIVEGP 122 AI E Sbjct: 204 GAIYEKD 210 >gi|302878833|ref|YP_003847397.1| cyclic nucleotide-binding protein [Gallionella capsiferriformans ES-2] gi|302581622|gb|ADL55633.1| cyclic nucleotide-binding protein [Gallionella capsiferriformans ES-2] Length = 796 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 21/90 (23%), Gaps = 28/90 (31%) Query: 59 GEERCIACKLCEAICPA----------QAITIESGPRCHDGTRRTVRYDID--------- 99 RCI C CE C +A + + R Sbjct: 635 DYARCIRCNNCETSCADAHDGTSRLDREAGSTFAQIHVPTSCRHCEHPHCMKDCPPDAIH 694 Query: 100 ---------MIKCIYCGLCQEACPVDAIVE 120 CI CG CQ CP I Sbjct: 695 RSINGEVFISDNCIGCGNCQTNCPYGVIQM 724 Score = 34.7 bits (78), Expect = 4.0, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 22/78 (28%), Gaps = 21/78 (26%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI---------------KCIY 105 + CI C C+ CP I + + V I KC Sbjct: 705 DNCIGCGNCQTNCPYGVIQMAVKQDYQKRSIWQVMLGISPSQAKPAASDALPKVAVKCDM 764 Query: 106 CG------LCQEACPVDA 117 C +C ACP A Sbjct: 765 CKDIIGGPVCVRACPTGA 782 >gi|213408048|ref|XP_002174795.1| translation initiation factor RLI1 [Schizosaccharomyces japonicus yFS275] gi|212002842|gb|EEB08502.1| translation initiation factor RLI1 [Schizosaccharomyces japonicus yFS275] Length = 594 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 21/56 (37%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 K C C + +G C + T I CI CG+C + CP AI Sbjct: 20 KKCRQECRKSCPVVRTGKLCIEVTPNDRIAFISETLCIGCGICVKKCPFSAINIIN 75 >gi|217967301|ref|YP_002352807.1| Fe-S cluster domain protein [Dictyoglomus turgidum DSM 6724] gi|217336400|gb|ACK42193.1| Fe-S cluster domain protein [Dictyoglomus turgidum DSM 6724] Length = 443 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 11/70 (15%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 E + +RC C C CP +A+ + +G I +CI CG Sbjct: 1 MSEKYIHSVAINLQRCRGCIHCIRHCPTEAMRVRNGKSL-----------IIPYRCIDCG 49 Query: 108 LCQEACPVDA 117 C CP A Sbjct: 50 ECIRVCPYHA 59 >gi|189485409|ref|YP_001956350.1| 4Fe-4S binding protein [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287368|dbj|BAG13889.1| 4Fe-4S binding protein [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 57 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 11/65 (16%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 Y E C+ C C CP AI + Y I+ KC CG+C+ C Sbjct: 1 MAYQINENACVGCGACAGSCPVSAIEQKEDK-----------YTINSDKCKGCGVCESTC 49 Query: 114 PVDAI 118 PV AI Sbjct: 50 PVSAI 54 Score = 35.5 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 11/28 (39%), Positives = 16/28 (57%) Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPN 123 Y I+ C+ CG C +CPV AI + + Sbjct: 3 YQINENACVGCGACAGSCPVSAIEQKED 30 >gi|156975237|ref|YP_001446144.1| electron transport complex protein RnfC [Vibrio harveyi ATCC BAA-1116] gi|156526831|gb|ABU71917.1| hypothetical protein VIBHAR_02966 [Vibrio harveyi ATCC BAA-1116] Length = 912 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 1/53 (1%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 CI C C CPA + + ++++ CI CG C CP Sbjct: 377 ECIRCSQCAEACPAS-LLPQQLQWYAKSQEYEKLEELNLKDCIECGACAFVCP 428 >gi|154482950|ref|ZP_02025398.1| hypothetical protein EUBVEN_00648 [Eubacterium ventriosum ATCC 27560] gi|149736234|gb|EDM52120.1| hypothetical protein EUBVEN_00648 [Eubacterium ventriosum ATCC 27560] Length = 272 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 7/75 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV-----RYDIDMIKCIYCGLCQEAC 113 E+C AC C A CP I+I + R+ CI CGLC + C Sbjct: 175 DREKCKACGKCVAACPKGLISIIPADHQYMVKCRSKDKGRDVMQACTAGCIGCGLCAKNC 234 Query: 114 PVDAIVEGPNFEFAT 128 P DAI + AT Sbjct: 235 PNDAIDF--EYNLAT 247 Score = 41.6 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 21/60 (35%), Gaps = 11/60 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C LC CP AI E I+ KC CG+C CP I Sbjct: 220 CTAGCIGCGLCAKNCPNDAIDFEYNLA-----------TINQDKCKNCGICAAKCPKKVI 268 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 21/64 (32%), Gaps = 11/64 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C C AI I +G +D KC CG C ACP I Sbjct: 146 CSYGCLGLGSCVKACEFDAIHIVNGKAL-----------VDREKCKACGKCVAACPKGLI 194 Query: 119 VEGP 122 P Sbjct: 195 SIIP 198 >gi|150403366|ref|YP_001330660.1| cobyrinic acid ac-diamide synthase [Methanococcus maripaludis C7] gi|150034396|gb|ABR66509.1| Cobyrinic acid ac-diamide synthase [Methanococcus maripaludis C7] Length = 285 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 23/62 (37%), Gaps = 11/62 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C C C +C A++I + C CGLC ACPV AI Sbjct: 66 DENLCNNCGECSRLCKFNALSITPN-----------NTTVFEKLCHDCGLCYIACPVQAI 114 Query: 119 VE 120 E Sbjct: 115 SE 116 >gi|83944378|ref|ZP_00956833.1| dihydropyrimidine dehydrogenase [Sulfitobacter sp. EE-36] gi|83953420|ref|ZP_00962142.1| dihydropyrimidine dehydrogenase [Sulfitobacter sp. NAS-14.1] gi|83842388|gb|EAP81556.1| dihydropyrimidine dehydrogenase [Sulfitobacter sp. NAS-14.1] gi|83844922|gb|EAP82804.1| dihydropyrimidine dehydrogenase [Sulfitobacter sp. EE-36] Length = 434 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 20/112 (17%), Positives = 31/112 (27%), Gaps = 15/112 (13%) Query: 14 KEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRY----PNGEERCIACKLC 69 +E + Y T + + Y ++ CI+C C Sbjct: 297 QEMISGLS---EYMDDKGMTSVDQLVRRAVPNVTDWNQLNLNYVAKAKIDQDLCISCGRC 353 Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DAIVE 120 A C E + + +C+ C LC CPV D I Sbjct: 354 FAAC-------EDTSHQAIAMSEDRTFSVIDDECVACNLCVNVCPVEDCISM 398 >gi|167037823|ref|YP_001665401.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167040723|ref|YP_001663708.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Thermoanaerobacter sp. X514] gi|256752156|ref|ZP_05493022.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermoanaerobacter ethanolicus CCSD1] gi|300914762|ref|ZP_07132078.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermoanaerobacter sp. X561] gi|307724004|ref|YP_003903755.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein [Thermoanaerobacter sp. X513] gi|320116240|ref|YP_004186399.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166854963|gb|ABY93372.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermoanaerobacter sp. X514] gi|166856657|gb|ABY95065.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256748970|gb|EEU62008.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermoanaerobacter ethanolicus CCSD1] gi|300889697|gb|EFK84843.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermoanaerobacter sp. X561] gi|307581065|gb|ADN54464.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Thermoanaerobacter sp. X513] gi|319929331|gb|ADV80016.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 56 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 26/64 (40%), Gaps = 11/64 (17%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + CI+C C A CP AI G Y+ID CI CG C+ CP Sbjct: 1 MAHYITDECISCGACTAECPVDAIHEGDGK-----------YEIDPDTCIDCGACEAVCP 49 Query: 115 VDAI 118 AI Sbjct: 50 TGAI 53 >gi|332800160|ref|YP_004461659.1| indolepyruvate ferredoxin oxidoreductase subunit alpha [Tepidanaerobacter sp. Re1] gi|332697895|gb|AEE92352.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Tepidanaerobacter sp. Re1] Length = 593 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 10/70 (14%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 ++Y EE C C+ C T P + Y ID +CI C +C + C Sbjct: 534 KKYEVDEEICNGCRAC---------TRTGCPAINFSMNNKKSY-IDQAQCIGCSVCAQVC 583 Query: 114 PVDAIVEGPN 123 PV+AI E Sbjct: 584 PVNAIHEKGE 593 >gi|325970887|ref|YP_004247078.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Spirochaeta sp. Buddy] gi|324026125|gb|ADY12884.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Spirochaeta sp. Buddy] Length = 354 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 9/71 (12%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 CI C C+ CP E + + +C+ CG C +AC Sbjct: 280 MHIRTDVTSCIGCGACDRACPLSIPIQEKASKALA---------VHSSRCVGCGHCVDAC 330 Query: 114 PVDAIVEGPNF 124 P + F Sbjct: 331 PKHTLRYETTF 341 >gi|307247153|ref|ZP_07529205.1| Electron transport complex protein rnfC [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|306856402|gb|EFM88553.1| Electron transport complex protein rnfC [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 684 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 34/107 (31%), Gaps = 3/107 (2%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E CI C C CP + + + + CI CG+C CP Sbjct: 379 PEPERSCIRCSSCSDACPVG-LLPQQLYWYARSEDHDKSKEYHLDACIECGVCAYVCP-S 436 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 I F E+ ++ R+E+ R + + R Sbjct: 437 YIPLIQYFRQEKAKITEIEEKAKKAEEAKARFEAREAR-LQKEKDAR 482 >gi|303245128|ref|ZP_07331444.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanothermococcus okinawensis IH1] gi|302484511|gb|EFL47459.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanothermococcus okinawensis IH1] Length = 656 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 28/91 (30%), Gaps = 7/91 (7%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAIT-------IESGPRCHDGTRRTVRYDI 98 F+ + + E +C C C +CP + +Y I Sbjct: 229 NFKVKILKKPRYLDETKCTGCGQCAEVCPIEVPNEFDMGLGTRKAIYKPFPQAVPAKYTI 288 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 D CI CGLC C AI E E Sbjct: 289 DKEHCIECGLCSTVCGPKAIDYNQKPELVEE 319 Score = 40.9 bits (94), Expect = 0.068, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 6/64 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ C C +C CP A + + ++ C CG C CP A+ Sbjct: 580 NEDICGGCGVCVKQCPYGAPIMVEKENGK------LVANVISALCKGCGTCAAGCPSGAM 633 Query: 119 VEGP 122 + Sbjct: 634 EQHH 637 >gi|291543381|emb|CBL16490.1| glutamate synthase (NADPH) GltB2 subunit [Ruminococcus sp. 18P13] Length = 501 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 9/65 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++RCI C++CE C + + + KC+ C C CP A+ Sbjct: 15 NQDRCIGCRVCERQCANEVHSYNAELDKMLSD---------ETKCVNCHRCVTLCPTHAL 65 Query: 119 VEGPN 123 N Sbjct: 66 KIVKN 70 >gi|316932168|ref|YP_004107150.1| formate dehydrogenase subunit alpha [Rhodopseudomonas palustris DX-1] gi|315599882|gb|ADU42417.1| formate dehydrogenase, alpha subunit [Rhodopseudomonas palustris DX-1] Length = 948 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 30/97 (30%), Gaps = 6/97 (6%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVR 95 EK + + +CI C C C T +G ++ Sbjct: 146 EKHPSPGLDESNPYFTYDAS---KCIVCSRCVRACEEVQGTFALTIAGRGFDSVVSSGMQ 202 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 +C+ CG C +ACP + E E T R Sbjct: 203 ESFLGSECVSCGACVQACPTATLNEKSVIEIGTPERS 239 >gi|304316117|ref|YP_003851262.1| glutamate synthase (NADPH) [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777619|gb|ADL68178.1| Glutamate synthase (NADPH) [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 501 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 20/109 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA- 117 +RCI CK+C C + + + KC+ C C CP A Sbjct: 15 DYDRCINCKVCMRQCANEVHSYDEDLDKMIEDDY---------KCVNCQRCVVMCPTHAL 65 Query: 118 --IVEGPNFEFATETRQELYYDKERLLNNGDRWES--EIVRNIVTDSPY 162 I F R+ + + + + + E+ ++ + D PY Sbjct: 66 TIIKHPQVF------RENANWTYDAIRDIYKQAETGGVLLSAMGNDRPY 108 >gi|226312824|ref|YP_002772718.1| dihydropyrimidine dehydrogenase [Brevibacillus brevis NBRC 100599] gi|226095772|dbj|BAH44214.1| conserved hypothetical protein [Brevibacillus brevis NBRC 100599] Length = 425 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 25/78 (32%), Gaps = 3/78 (3%) Query: 47 FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 + + EE CI C C C + + D R + C+ C Sbjct: 326 YLNLNYKVVARIHEETCINCNKCHIACED--TSHQCIDIVPDAVTGKERLVVREEDCVGC 383 Query: 107 GLCQEACPVD-AIVEGPN 123 LC CPV+ AI Sbjct: 384 NLCSIVCPVEGAIEMVEI 401 >gi|167040761|ref|YP_001663746.1| hydrogenase, Fe-only [Thermoanaerobacter sp. X514] gi|300914799|ref|ZP_07132115.1| hydrogenase, Fe-only [Thermoanaerobacter sp. X561] gi|307723967|ref|YP_003903718.1| hydrogenase, Fe-only [Thermoanaerobacter sp. X513] gi|166855001|gb|ABY93410.1| hydrogenase, Fe-only [Thermoanaerobacter sp. X514] gi|300889734|gb|EFK84880.1| hydrogenase, Fe-only [Thermoanaerobacter sp. X561] gi|307581028|gb|ADN54427.1| hydrogenase, Fe-only [Thermoanaerobacter sp. X513] Length = 581 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 3/67 (4%) Query: 59 GEERCIACKLCEAIC-PAQAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPV 115 +C+ C+ C ++C Q + T + + CI CG C E CPV Sbjct: 144 DPNKCVLCRRCVSVCSEVQNVFAIGMVNRGFNTMVAPSFGRSLKDSPCISCGQCIEVCPV 203 Query: 116 DAIVEGP 122 AI E Sbjct: 204 GAIYEKD 210 >gi|160331512|ref|XP_001712463.1| rli1 [Hemiselmis andersenii] gi|159765911|gb|ABW98138.1| rli1 [Hemiselmis andersenii] Length = 599 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 14/52 (26%), Positives = 20/52 (38%) Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C+ C + +G C + I CI CG+C + CP AI Sbjct: 21 CKFECKKNCPIVRTGKFCIQIDFSENKAKISEELCIGCGICIKKCPFGAITI 72 >gi|160915739|ref|ZP_02077947.1| hypothetical protein EUBDOL_01748 [Eubacterium dolichum DSM 3991] gi|158432215|gb|EDP10504.1| hypothetical protein EUBDOL_01748 [Eubacterium dolichum DSM 3991] Length = 1168 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 27/83 (32%), Gaps = 16/83 (19%) Query: 51 HALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY 96 A++ E CI C +C +CP A + ++Y Sbjct: 678 IAVQVPTWHAENCIQCGICSFVCPHATIRPFLLTDEEVANAPMEFETLQAMGKGVENLKY 737 Query: 97 DID--MIKCIYCGLCQEACPVDA 117 I C+ CGLC CP A Sbjct: 738 RIQVTPANCVGCGLCAVECPGKA 760 Score = 34.7 bits (78), Expect = 4.9, Method: Composition-based stats. Identities = 13/47 (27%), Positives = 15/47 (31%), Gaps = 3/47 (6%) Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNG 145 CI CG+C CP I F E + E L G Sbjct: 686 HAENCIQCGICSFVCPHATIRP---FLLTDEEVANAPMEFETLQAMG 729 >gi|153953567|ref|YP_001394332.1| anaerobic sulfite reductase-related protein [Clostridium kluyveri DSM 555] gi|219854189|ref|YP_002471311.1| hypothetical protein CKR_0846 [Clostridium kluyveri NBRC 12016] gi|146346448|gb|EDK32984.1| Anaerobic sulfite reductase-related protein [Clostridium kluyveri DSM 555] gi|219567913|dbj|BAH05897.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 229 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 26/88 (29%), Gaps = 8/88 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + T + G + RCI C+ C C T + + Sbjct: 59 CPNDCIKTRMQDFGIIGMTETQYDSYRCIGCQACVKNC--------KKRSTGALTFGSFK 110 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPN 123 D KCI CG C CP A Sbjct: 111 VVRDHDKCIGCGECVGKCPTGAWTRSDE 138 >gi|18369662|emb|CAD21635.1| putative dehydrogenase subunit [Azoarcus evansii] Length = 850 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 22/72 (30%), Gaps = 7/72 (9%) Query: 55 RYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTV---RYDIDMIKCIYCG 107 + CI C+ C C + + G R V + C +C Sbjct: 192 FFDRDYNLCIDCRRCLVACNDVRGVGCLEFKGSRDAWQGKRTYVGTIAPTLIESGCTFCQ 251 Query: 108 LCQEACPVDAIV 119 C CP A++ Sbjct: 252 ACVTVCPTGALM 263 >gi|57234310|ref|YP_181645.1| iron-sulfur cluster-binding protein [Dehalococcoides ethenogenes 195] gi|57224758|gb|AAW39815.1| iron-sulfur cluster-binding protein [Dehalococcoides ethenogenes 195] Length = 136 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 9/63 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E RC C C +CP A +I+ R + + KCI CG+C +ACP A+ Sbjct: 82 NENRCTHCGACVTMCPVDAFSIDEDNREINFDAK---------KCIVCGICIQACPPRAM 132 Query: 119 VEG 121 Sbjct: 133 ELH 135 >gi|134299511|ref|YP_001113007.1| hydrogenase [Desulfotomaculum reducens MI-1] gi|134052211|gb|ABO50182.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Desulfotomaculum reducens MI-1] Length = 659 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 20/63 (31%), Gaps = 3/63 (4%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM---IKCIYCGLCQEACPV 115 +CI C LC +C + + V CI CG C CP Sbjct: 142 DPNKCILCGLCVRVCKEKQGIGVWDFKNRGSRTDIVAAMDQPLSESACINCGQCIAVCPT 201 Query: 116 DAI 118 A+ Sbjct: 202 GAL 204 >gi|327401089|ref|YP_004341928.1| pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta [Archaeoglobus veneficus SNP6] gi|327316597|gb|AEA47213.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Archaeoglobus veneficus SNP6] Length = 109 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 5/67 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGP-----RCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 EE+CI C CE CP I + + ++ ++ C CG C C Sbjct: 32 DEEKCIGCGECETFCPDLCIELVEREGNNENSGENKKKKKKVAKVNYDYCKGCGTCSVVC 91 Query: 114 PVDAIVE 120 P +AI Sbjct: 92 PAEAIRM 98 Score = 33.9 bits (76), Expect = 7.8, Method: Composition-based stats. Identities = 12/36 (33%), Positives = 14/36 (38%) Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + G ID KCI CG C+ CP I Sbjct: 18 KIKTGDWGAEYPVIDEEKCIGCGECETFCPDLCIEL 53 >gi|313904957|ref|ZP_07838328.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eubacterium cellulosolvens 6] gi|313470214|gb|EFR65545.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eubacterium cellulosolvens 6] Length = 56 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 11/60 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C++C CE CP AI+ G + ID C+ CG C+ ACP AI E Sbjct: 7 DDCVSCGTCEGECPVGAISQGDGK-----------FVIDADSCVDCGACEAACPTGAISE 55 >gi|301310929|ref|ZP_07216858.1| NADH dehydrogenase I, F subunit [Bacteroides sp. 20_3] gi|300830992|gb|EFK61633.1| NADH dehydrogenase I, F subunit [Bacteroides sp. 20_3] Length = 780 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 10/58 (17%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C+ C C CP+ AI + ID+ KC+ CGLC + C DAI Sbjct: 726 DDCVGCTKCSKACPSDAIPYTPYEKHS----------IDIEKCVLCGLCIDECSFDAI 773 Score = 37.4 bits (85), Expect = 0.75, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 1/48 (2%) Query: 89 GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 GT + + + C+ C C +ACP DAI P +E + ++ Sbjct: 714 GTCKDMVRLMITDDCVGCTKCSKACPSDAIPYTP-YEKHSIDIEKCVL 760 >gi|297616548|ref|YP_003701707.1| aldo/keto reductase [Syntrophothermus lipocalidus DSM 12680] gi|297144385|gb|ADI01142.1| aldo/keto reductase [Syntrophothermus lipocalidus DSM 12680] Length = 321 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 11/58 (18%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C C QA+ ++ G R ++ KCI CG C CP I Sbjct: 274 CRGCGSCLEACRYQALELQEG-----------RVEVKKEKCILCGYCSRYCPDFCIKI 320 >gi|304316330|ref|YP_003851475.1| electron transport complex, RnfABCDGE type subunit beta [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777832|gb|ADL68391.1| electron transport complex, RnfABCDGE type, B subunit [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 279 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 11/57 (19%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 CI CK CE C A+ + ID KC+ C C E CP D+I Sbjct: 221 CIGCKACERACNYDAVHVIDNLA-----------KIDYEKCVSCMACVEKCPTDSIY 266 Score = 41.6 bits (96), Expect = 0.032, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 10/60 (16%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ CE +CP AI + +D KC CG+C +ACP + I Sbjct: 146 CLGLGTCEKLCPFDAIHVIGDGVAV----------VDEDKCTGCGICVDACPKNIIELVD 195 Score = 33.5 bits (75), Expect = 9.6, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 7/71 (9%) Query: 59 GEERCIACKLCEAICP------AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 E++C C +C CP A T + + VR + CI C C+ A Sbjct: 172 DEDKCTGCGICVDACPKNIIELVDANTKTRVICSNTDKGKNVRPVCTVG-CIGCKACERA 230 Query: 113 CPVDAIVEGPN 123 C DA+ N Sbjct: 231 CNYDAVHVIDN 241 >gi|225019560|ref|ZP_03708752.1| hypothetical protein CLOSTMETH_03513 [Clostridium methylpentosum DSM 5476] gi|224947617|gb|EEG28826.1| hypothetical protein CLOSTMETH_03513 [Clostridium methylpentosum DSM 5476] Length = 591 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 11/63 (17%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 Y ++RCI CK C A+ +E G I+ C C +C + CP Sbjct: 533 YTVDKDRCIGCKKCIRELGCPALVLEGGKAA-----------IEPSLCYGCSICAQVCPC 581 Query: 116 DAI 118 AI Sbjct: 582 GAI 584 >gi|210621095|ref|ZP_03292458.1| hypothetical protein CLOHIR_00401 [Clostridium hiranonis DSM 13275] gi|210154916|gb|EEA85922.1| hypothetical protein CLOHIR_00401 [Clostridium hiranonis DSM 13275] Length = 305 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 12/58 (20%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 CI C C + C A+AI ++ +Y +D KC CG C CP A+ Sbjct: 61 CIECGRCISACKAKAIDPKN------------KYWVDRTKCTLCGECALVCPSGALSM 106 >gi|157962175|ref|YP_001502209.1| electron transport complex protein RnfB [Shewanella pealeana ATCC 700345] gi|189043389|sp|A8H537|RNFB_SHEPA RecName: Full=Electron transport complex protein rnfB gi|157847175|gb|ABV87674.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella pealeana ATCC 700345] Length = 189 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 23/66 (34%), Gaps = 10/66 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E+ CI C C CP AI + + + C C LC CPVD Sbjct: 108 YIREDECIGCTKCIQACPVDAILGSGK----------LMHTVITDYCTGCDLCVAPCPVD 157 Query: 117 AIVEGP 122 I P Sbjct: 158 CIDMLP 163 >gi|146303092|ref|YP_001190408.1| pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta [Metallosphaera sedula DSM 5348] gi|145701342|gb|ABP94484.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Metallosphaera sedula DSM 5348] Length = 85 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 11/63 (17%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 +RCI C C CP I + R +++ C CG+C CPV AI Sbjct: 33 DRCIGCNACYLWCPEGTI-----------GVKGKRAEVNYEYCKGCGVCANVCPVKAISM 81 Query: 121 GPN 123 Sbjct: 82 VTE 84 >gi|161525536|ref|YP_001580548.1| formate dehydrogenase subunit alpha [Burkholderia multivorans ATCC 17616] gi|189349736|ref|YP_001945364.1| formate dehydrogenase subunit alpha [Burkholderia multivorans ATCC 17616] gi|160342965|gb|ABX16051.1| formate dehydrogenase, alpha subunit [Burkholderia multivorans ATCC 17616] gi|189333758|dbj|BAG42828.1| formate dehydrogenase alpha subunit [Burkholderia multivorans ATCC 17616] Length = 983 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 23/78 (29%), Gaps = 3/78 (3%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIK 102 R + + + +CI C C C T + + Sbjct: 178 HDRKDESNPYFTYDPSKCIVCNRCVRACEETQGTFALTIAARGFESRVAAGESEPFMESE 237 Query: 103 CIYCGLCQEACPVDAIVE 120 C+ CG C ACP + E Sbjct: 238 CVSCGACVAACPTATLQE 255 >gi|20094675|ref|NP_614522.1| MinD family protein [Methanopyrus kandleri AV19] gi|19887839|gb|AAM02452.1| MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Methanopyrus kandleri AV19] Length = 259 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 23/68 (33%), Gaps = 19/68 (27%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 Y + C+ C C +CP A+ C CG+C ACP Sbjct: 62 YAVKTDDCVECGRCSEVCPWDAVED-------------------PTACDGCGICAIACPE 102 Query: 116 DAIVEGPN 123 DAI P Sbjct: 103 DAIEFEPE 110 Score = 34.3 bits (77), Expect = 6.0, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 15/49 (30%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + RY + C+ CG C E CP DA+ Sbjct: 36 ADVTEPDVPAYLELEVEEVLEEIRARYAVKTDDCVECGRCSEVCPWDAV 84 >gi|118581916|ref|YP_903166.1| NADH dehydrogenase (quinone) [Pelobacter propionicus DSM 2379] gi|118504626|gb|ABL01109.1| NADH dehydrogenase subunit F [Pelobacter propionicus DSM 2379] Length = 488 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 10/58 (17%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C+ C LC +CP I+ + ID CI CG C +AC AI Sbjct: 438 ESCVGCTLCSRVCPVNCISGT----------VKGVHVIDQAACIKCGACIDACKFQAI 485 Score = 34.7 bits (78), Expect = 3.9, Method: Composition-based stats. Identities = 9/43 (20%), Positives = 13/43 (30%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 + + I C+ C LC CPV+ I Sbjct: 416 HVVDKKCPAGVCVSLLEIVILAESCVGCTLCSRVCPVNCISGT 458 >gi|67597555|ref|XP_666154.1| RNase L inhibitor-like protein [Cryptosporidium hominis TU502] gi|54657090|gb|EAL35924.1| RNase L inhibitor-like protein [Cryptosporidium hominis] Length = 618 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 1/86 (1%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P + + E LR +RC K C C + + +G C + + Sbjct: 3 PKKSTKSGGGDENESRLRIAIVEADRCKP-KNCRQECKSFCPVVRTGKLCVEVDSSSKIA 61 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGP 122 I CI CG+C + CP AI Sbjct: 62 SISEPLCIGCGICVKKCPYSAITIIN 87 >gi|332560813|ref|ZP_08415131.1| electron transport complex protein rnfB [Rhodobacter sphaeroides WS8N] gi|332274611|gb|EGJ19927.1| electron transport complex protein rnfB [Rhodobacter sphaeroides WS8N] Length = 188 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 10/58 (17%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C C CP AI + + + CI C C EACP +AI Sbjct: 111 DHCTGCMRCFKRCPTDAIIGAN----------RQIHTVVTDACIGCNACIEACPTEAI 158 >gi|293370175|ref|ZP_06616735.1| ferredoxin [Bacteroides ovatus SD CMC 3f] gi|292634672|gb|EFF53201.1| ferredoxin [Bacteroides ovatus SD CMC 3f] Length = 304 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 9/65 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C C A C AI + ++D KC CG C +ACP I Sbjct: 138 CSYGCLGCGDCVAACQFDAIHMNPETGLP---------EVDEAKCTACGACVKACPKAII 188 Query: 119 VEGPN 123 P Sbjct: 189 EIRPQ 193 Score = 41.2 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 27/81 (33%), Gaps = 8/81 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------DMIKCIYCGLCQ 110 E +C AC C CP I I + + + CI CG C Sbjct: 169 DEAKCTACGACVKACPKAIIEIRPQGKKSRRVYVSCVNKDKGAVARKACTVSCIGCGKCV 228 Query: 111 EACPVDAIVEGPNFEFATETR 131 + CP +AI N + + Sbjct: 229 KTCPFEAITLENNLAYIDPNK 249 Score = 40.9 bits (94), Expect = 0.057, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 11/62 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C C CP +AIT+E+ ID KC C C E CP ++I Sbjct: 217 CTVSCIGCGKCVKTCPFEAITLENNLAY-----------IDPNKCKSCRKCVEVCPQNSI 265 Query: 119 VE 120 +E Sbjct: 266 IE 267 >gi|283955434|ref|ZP_06372932.1| iron-sulfur cluster binding protein [Campylobacter jejuni subsp. jejuni 414] gi|283793061|gb|EFC31832.1| iron-sulfur cluster binding protein [Campylobacter jejuni subsp. jejuni 414] Length = 479 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 22/89 (24%), Gaps = 10/89 (11%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-----QAITIESGPRCHDGTRR 92 R + RCI C C CP + P Sbjct: 287 EVHVILFDHNRSKMLAHEDYYEALRCIRCGACMNFCPVYDQIGGHAYQTTYPGPIGEVIS 346 Query: 93 TVRYDIDM-----IKCIYCGLCQEACPVD 116 + ID C CG C E CPV Sbjct: 347 PNIFGIDHTGDILNFCSLCGRCSEVCPVQ 375 >gi|283955519|ref|ZP_06373014.1| iron-sulfur cluster binding protein [Campylobacter jejuni subsp. jejuni 1336] gi|283792980|gb|EFC31754.1| iron-sulfur cluster binding protein [Campylobacter jejuni subsp. jejuni 1336] Length = 479 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 22/89 (24%), Gaps = 10/89 (11%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-----QAITIESGPRCHDGTRR 92 R + RCI C C CP + P Sbjct: 287 EVHVILFDHNRSKMLAHEDYYEALRCIRCGACMNFCPVYDQIGGHAYQTTYPGPIGEVIS 346 Query: 93 TVRYDIDM-----IKCIYCGLCQEACPVD 116 + ID C CG C E CPV Sbjct: 347 PNIFGIDHTGDILNFCSLCGRCSEVCPVQ 375 >gi|239904831|ref|YP_002951569.1| heterodisulfide reductase subunit A [Desulfovibrio magneticus RS-1] gi|239794694|dbj|BAH73683.1| heterodisulfide reductase subunit A [Desulfovibrio magneticus RS-1] Length = 652 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 7/64 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +RC+ C C CP +AI R + ++ C CG+C CP AI Sbjct: 580 DIKRCVGCGKCIMTCPFKAIK-------EVEFRGQKKAEVIETVCQGCGICTSTCPQGAI 632 Query: 119 VEGP 122 Sbjct: 633 QLSH 636 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 31/98 (31%), Gaps = 13/98 (13%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPA----QAITIESGP----RCHDGTRRTVRYD 97 F+ + R E C C C CP+ A + GP + Sbjct: 225 NFQVQVKKRATYVDWELCTGCGACMEKCPSKKNPDAFNEKIGPCTSINIPFPQAIPKKAV 284 Query: 98 IDMIKCI-----YCGLCQEACPVDAIVEGPNFEFATET 130 ID C CG+C + CP AI E TE Sbjct: 285 IDPSTCRQFVKGKCGVCAKVCPTKAIRYDMTDEIVTED 322 Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 3/34 (8%) Query: 102 KCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 +C+ CG C CP AI EF + + E+ Sbjct: 583 RCVGCGKCIMTCPFKAI---KEVEFRGQKKAEVI 613 >gi|198415496|ref|XP_002121964.1| PREDICTED: similar to ATP-binding cassette, sub-family E, member 1 [Ciona intestinalis] Length = 600 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 1/64 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++C K C C + G C + T + I CI CG+C + CP +AI Sbjct: 12 NNDKCKP-KRCRQECRKSCPVVRMGKLCIEVTPLSKLAWISEELCIGCGICVKKCPFEAI 70 Query: 119 VEGP 122 Sbjct: 71 SIIN 74 >gi|217979756|ref|YP_002363903.1| formate dehydrogenase, alpha subunit [Methylocella silvestris BL2] gi|217505132|gb|ACK52541.1| formate dehydrogenase, alpha subunit [Methylocella silvestris BL2] Length = 948 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 3/75 (4%) Query: 55 RYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQE 111 + +CI C C C Q + G+R D +C+ CG C + Sbjct: 159 YFAYDPAKCIVCNRCVRACEEVQGTFALTIDGRGFGSRVAAGQDEPFLESECVSCGACVQ 218 Query: 112 ACPVDAIVEGPNFEF 126 ACP ++E E Sbjct: 219 ACPTATLMEKSVIEI 233 >gi|218780444|ref|YP_002431762.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfatibacillum alkenivorans AK-01] gi|218761828|gb|ACL04294.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfatibacillum alkenivorans AK-01] Length = 281 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 12/64 (18%) Query: 59 GEERCIACKLCE-AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 +E C+ C C C +AI++ G I+ C CG C EACP +A Sbjct: 200 NQEECVGCGTCVSKACILEAISLVDGKAV-----------INQANCRGCGRCAEACPTNA 248 Query: 118 IVEG 121 I Sbjct: 249 ITLT 252 >gi|306521037|ref|ZP_07407384.1| pyruvate-flavodoxin oxidoreductase [Clostridium difficile QCD-32g58] Length = 1087 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 26/81 (32%), Gaps = 18/81 (22%) Query: 61 ERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRYDID--MIKCI 104 + CI C C ICP A + ++Y I + C Sbjct: 595 DNCIQCNQCSFICPHACIRPVLVTEEELANAPEGFEAKKALGKGLEGLKYRIQVSPLDCT 654 Query: 105 YCGLCQEACP--VDAIVEGPN 123 CG C + CP A+V P Sbjct: 655 GCGNCADICPAKEKALVMKPI 675 >gi|126734202|ref|ZP_01749949.1| dihydroorotate dehydrogenase family protein, putative [Roseobacter sp. CCS2] gi|126717068|gb|EBA13932.1| dihydroorotate dehydrogenase family protein, putative [Roseobacter sp. CCS2] Length = 434 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 8/76 (10%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI C C A C E + + +C+ Sbjct: 330 QYLNLNYVAKAKINQDDCIKCGRCYAAC-------EDTSHQAIAMSDDRTFTVIDEECVA 382 Query: 106 CGLCQEACPV-DAIVE 120 C LC + CPV D I+ Sbjct: 383 CNLCVDVCPVEDCIIM 398 >gi|118470937|ref|YP_884577.1| formate dehydrogenase, subunit alpha [Mycobacterium smegmatis str. MC2 155] gi|118172224|gb|ABK73120.1| formate dehydrogenase, alpha subunit [Mycobacterium smegmatis str. MC2 155] Length = 939 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 25/81 (30%), Gaps = 3/81 (3%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CIAC C C T G +C+ CG C + Sbjct: 159 YFDFDPSKCIACSRCVRACGEIQGTFALTIEGRGFESKVSPGAGELFMDSECVSCGACVQ 218 Query: 112 ACPVDAIVEGPNFEFATETRQ 132 ACP + E E TR Sbjct: 219 ACPTATLQERSVVELGIPTRS 239 >gi|77465207|ref|YP_354710.1| electron transport complex protein rnfB [Rhodobacter sphaeroides 2.4.1] gi|123757730|sp|Q3IXC5|RNFB_RHOS4 RecName: Full=Electron transport complex protein rnfB; AltName: Full=Nitrogen fixation protein rnfB gi|77389625|gb|ABA80809.1| Electron transport complex protein rnfB [Rhodobacter sphaeroides 2.4.1] Length = 188 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 10/58 (17%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C C CP AI + + + CI C C EACP +AI Sbjct: 111 DHCTGCMRCFKRCPTDAIIGAN----------RQIHTVVTDACIGCNACIEACPTEAI 158 >gi|20089854|ref|NP_615929.1| coenzyme F420 hydrogenase, subunit gamma [Methanosarcina acetivorans C2A] gi|19914803|gb|AAM04409.1| coenzyme F420 hydrogenase, subunit gamma [Methanosarcina acetivorans C2A] Length = 262 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 32/85 (37%), Gaps = 13/85 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L + CI C C A CP +AIT E G D+ C+ CG C A Sbjct: 188 LMNDVINQGLCIGCGTCAASCPVRAITHEFGK-----------PQGDLNLCVKCGSCYGA 236 Query: 113 CPVDAIVEGPNFEFATETRQELYYD 137 CP EF E+ EL D Sbjct: 237 CPRSFFNFDVIPEF--ESISELIAD 259 >gi|14520529|ref|NP_126004.1| polyferredoxin related [Pyrococcus abyssi GE5] gi|5457745|emb|CAB49235.1| Fe-S cluster-containing hydrogenase component, putative [Pyrococcus abyssi GE5] Length = 168 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 26/95 (27%), Positives = 33/95 (34%), Gaps = 10/95 (10%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 Y K T + F R P +R I C C+ ICP AI +E+ Sbjct: 7 YLRKGYITPDELFSIIPKPSEERLRQRPVAVPECPQR-IPCTPCKEICPTGAIKMENPND 65 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 +D KCI C LC + CP A Sbjct: 66 IPI---------VDYEKCIGCSLCVQVCPGLAFFM 91 >gi|298481058|ref|ZP_06999252.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides sp. D22] gi|295083949|emb|CBK65472.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides xylanisolvens XB1A] gi|298272632|gb|EFI14199.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides sp. D22] Length = 304 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 9/65 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C C A C AI + ++D KC CG C +ACP I Sbjct: 138 CSYGCLGCGDCVAACQFDAIHMNPETGLP---------EVDEAKCTACGACVKACPKAII 188 Query: 119 VEGPN 123 P Sbjct: 189 EIRPQ 193 Score = 41.2 bits (95), Expect = 0.051, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 29/81 (35%), Gaps = 8/81 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCH--------DGTRRTVRYDIDMIKCIYCGLCQ 110 E +C AC C CP I I + + + V + CI CG C Sbjct: 169 DEAKCTACGACVKACPKAIIEIRPQGKKSRRVYISCVNKDKGAVARKACTVSCIGCGKCV 228 Query: 111 EACPVDAIVEGPNFEFATETR 131 + CP +AI N + + Sbjct: 229 KTCPFEAITLENNLAYIDPNK 249 Score = 40.9 bits (94), Expect = 0.058, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 11/62 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C C CP +AIT+E+ ID KC C C E CP ++I Sbjct: 217 CTVSCIGCGKCVKTCPFEAITLENNLAY-----------IDPNKCKSCRKCVEVCPQNSI 265 Query: 119 VE 120 +E Sbjct: 266 IE 267 >gi|291558287|emb|CBL35404.1| dihydroorotate oxidase B, catalytic subunit [Eubacterium siraeum V10Sc8a] Length = 494 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 6/60 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + +C+ C C C ++G + D + KC+ C LC CPV+ I Sbjct: 431 DKNKCVGCGRCYIAC------YDAGHQALDFDAEARKPVFLGSKCVGCHLCATVCPVNCI 484 >gi|269215415|ref|ZP_06159269.1| ferredoxin hydrogenase [Slackia exigua ATCC 700122] gi|269130902|gb|EEZ61977.1| ferredoxin hydrogenase [Slackia exigua ATCC 700122] Length = 573 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 3/63 (4%) Query: 59 GEERCIACKLCEAIC---PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 +CI C C ++C A+ +G H I C CG C CP Sbjct: 142 DSSKCIKCMRCVSVCEKNQHCAVWDFTGTGPHMKVTVREGLPIADAGCSLCGQCITHCPT 201 Query: 116 DAI 118 A+ Sbjct: 202 GAL 204 >gi|260174482|ref|ZP_05760894.1| ferredoxin [Bacteroides sp. D2] gi|315922749|ref|ZP_07918989.1| ferredoxin [Bacteroides sp. D2] gi|313696624|gb|EFS33459.1| ferredoxin [Bacteroides sp. D2] Length = 321 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 9/65 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C C A C AI + ++D KC CG C +ACP I Sbjct: 138 CSYGCLGCGDCVAACQFDAIHMNPETGLP---------EVDEAKCTACGACVKACPKAII 188 Query: 119 VEGPN 123 P Sbjct: 189 EIRPQ 193 Score = 40.9 bits (94), Expect = 0.054, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 8/76 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCH--------DGTRRTVRYDIDMIKCIYCGLCQ 110 E +C AC C CP I I + + + V + CI CG C Sbjct: 169 DEAKCTACGACVKACPKAIIEIRPQGKKSRRVYISCVNKDKGAVARKACTVSCIGCGKCV 228 Query: 111 EACPVDAIVEGPNFEF 126 + CP +AI N + Sbjct: 229 KTCPFEAITLENNLAY 244 Score = 40.5 bits (93), Expect = 0.082, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 11/62 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C C CP +AIT+E+ ID KC C C E CP + I Sbjct: 217 CTVSCIGCGKCVKTCPFEAITLENNLAY-----------IDPHKCKSCRKCVEVCPQNTI 265 Query: 119 VE 120 +E Sbjct: 266 IE 267 >gi|261350276|ref|ZP_05975693.1| putative 4Fe-4S binding domain protein [Methanobrevibacter smithii DSM 2374] gi|288861060|gb|EFC93358.1| putative 4Fe-4S binding domain protein [Methanobrevibacter smithii DSM 2374] Length = 399 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 1/39 (2%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNF-EFATETRQELY 135 I KCI CG C CPVDA G +F + A E E Sbjct: 130 IYEEKCIQCGQCAFGCPVDAKWTGKHFVDIAIENGAEFI 168 >gi|239627654|ref|ZP_04670685.1| formate acetyltransferase activating enzyme [Clostridiales bacterium 1_7_47_FAA] gi|239517800|gb|EEQ57666.1| formate acetyltransferase activating enzyme [Clostridiales bacterium 1_7_47FAA] Length = 283 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 27/87 (31%), Gaps = 2/87 (2%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RC+ C E + + H G R C+ CG C ACP + I Sbjct: 30 CPLRCMWCHNPEGLSYKPQLMRSGNGCLHCGKCRDACS--HPDTCVLCGSCVRACPKNLI 87 Query: 119 VEGPNFEFATETRQELYYDKERLLNNG 145 A L DK+ L G Sbjct: 88 RICGEEVTAEWLAGHLLKDKDYLEQVG 114 >gi|222445156|ref|ZP_03607671.1| hypothetical protein METSMIALI_00777 [Methanobrevibacter smithii DSM 2375] gi|222434721|gb|EEE41886.1| hypothetical protein METSMIALI_00777 [Methanobrevibacter smithii DSM 2375] Length = 399 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 17/39 (43%), Positives = 19/39 (48%), Gaps = 1/39 (2%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNF-EFATETRQELY 135 I KCI CG C CPVDA G +F + A E E Sbjct: 130 IYEEKCIQCGQCAFGCPVDAKWTGKHFVDIAIENGAEFI 168 >gi|218184578|gb|EEC67005.1| hypothetical protein OsI_33716 [Oryza sativa Indica Group] Length = 555 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 1/64 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+RC C C ++ G C + R+ I CI CG+C + CP AI Sbjct: 14 DEDRCKP-NKCGQECRRSCPVVKIGKHCIEIGPRSKSALISEELCIGCGICVKKCPFGAI 72 Query: 119 VEGP 122 Sbjct: 73 TIIN 76 >gi|212704141|ref|ZP_03312269.1| hypothetical protein DESPIG_02196 [Desulfovibrio piger ATCC 29098] gi|212672501|gb|EEB32984.1| hypothetical protein DESPIG_02196 [Desulfovibrio piger ATCC 29098] Length = 257 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 20/67 (29%), Gaps = 7/67 (10%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + C C C + C I + + R C++CG C C Sbjct: 1 MSFAVDISLCRHCGCCASGCVCGLIRLPESGVPYIEPSRQ-------DSCVHCGHCIAVC 53 Query: 114 PVDAIVE 120 P AI Sbjct: 54 PEGAIRL 60 >gi|254456592|ref|ZP_05070021.1| formate dehydrogenase, alpha subunit [Candidatus Pelagibacter sp. HTCC7211] gi|207083594|gb|EDZ61020.1| formate dehydrogenase, alpha subunit [Candidatus Pelagibacter sp. HTCC7211] Length = 922 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 26/87 (29%), Gaps = 6/87 (6%) Query: 38 FEKGSTSPRFRGEHA---LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 + ++ + +G + CI C C C + R Sbjct: 132 DHRYNSPKQHKGIPRDTSHDYMRMNLDNCINCGRCVRACDEIQGSFVLTMSGRGFESRIT 191 Query: 95 RYDIDM---IKCIYCGLCQEACPVDAI 118 + M C+ CG C CP DAI Sbjct: 192 TDNDMMFGDSSCVSCGACAHTCPTDAI 218 >gi|253701647|ref|YP_003022836.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp. M21] gi|251776497|gb|ACT19078.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp. M21] Length = 432 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 11/80 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RC C C AICP AI++ P G+ + ++ C+ CG+C C A+ Sbjct: 288 DPARCDGCGRCVAICPVDAISLVREPE---GSGMPAKARLNSELCLGCGVCARNCHTKAV 344 Query: 119 VEGPNFEFATETRQELYYDK 138 E R++ Sbjct: 345 RL--------EAREKRILTP 356 >gi|320107666|ref|YP_004183256.1| NADH:ubiquinone oxidoreductase subunit G, iron-sulfur-binding protein [Terriglobus saanensis SP1PR4] gi|319926187|gb|ADV83262.1| NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding protein [Terriglobus saanensis SP1PR4] Length = 801 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 26/84 (30%), Gaps = 9/84 (10%) Query: 44 SPRFRGEHAL-RRYPNGEERCIACKLCEAICPAQAITIESGPR--------CHDGTRRTV 94 R E RCI C C +C G + + Sbjct: 128 PKNHREEQKWSPTVYFDRPRCILCYRCVRMCGEGMDVFALGIQNRGSSAVIAPNIPMTQS 187 Query: 95 RYDIDMIKCIYCGLCQEACPVDAI 118 + + C CG+C +ACPV A+ Sbjct: 188 DNGMQALDCEECGMCIDACPVGAL 211 >gi|307251697|ref|ZP_07533602.1| Electron transport complex protein rnfC [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860894|gb|EFM92902.1| Electron transport complex protein rnfC [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 685 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 34/107 (31%), Gaps = 3/107 (2%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E CI C C CP + + + + CI CG+C CP Sbjct: 379 PEPERSCIRCSSCSDACPVG-LLPQQLYWYARSEDHDKSKEYHLDACIECGVCAYVCP-S 436 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 I F E+ ++ R+E+ R + + R Sbjct: 437 YIPLIQYFRQEKAKITEIEEKAKKAEEAKARFEAREAR-LQKEKDAR 482 >gi|302874559|ref|YP_003843192.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Clostridium cellulovorans 743B] gi|307690830|ref|ZP_07633276.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Clostridium cellulovorans 743B] gi|302577416|gb|ADL51428.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Clostridium cellulovorans 743B] Length = 1170 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 28/91 (30%), Gaps = 17/91 (18%) Query: 51 HALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY 96 A+ + CI C C +CP +A + Sbjct: 678 IAINVPEWQIDNCIQCNQCSYVCPHAAIRPFLLDEEEVLKAPESFVSKAATGAKGLNFKI 737 Query: 97 DIDMIKCIYCGLCQEACP--VDAIVEGPNFE 125 + + C CG C + CP A++ P FE Sbjct: 738 QLAVEDCSGCGNCAQVCPAKEKALIMKP-FE 767 >gi|302875113|ref|YP_003843746.1| hydrogenase, Fe-only [Clostridium cellulovorans 743B] gi|307690261|ref|ZP_07632707.1| hydrogenase, Fe-only [Clostridium cellulovorans 743B] gi|302577970|gb|ADL51982.1| hydrogenase, Fe-only [Clostridium cellulovorans 743B] Length = 579 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 33/93 (35%), Gaps = 14/93 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM---IKCIYCGLCQEACPV 115 ++CI C+ C ++C P ++ C CG C CP Sbjct: 149 DVDKCILCRRCVSVCNNIQTIGVLSPVFRGFETIISTAFMEPLAETNCTNCGQCVAVCPT 208 Query: 116 DAIVEGPNFEFATETRQELYYDKERLLNNGDRW 148 A+ E + ++ +D L++ D++ Sbjct: 209 GALRETND--------EDRVWDA---LDDEDKY 230 >gi|229827832|ref|ZP_04453901.1| hypothetical protein GCWU000182_03224 [Abiotrophia defectiva ATCC 49176] gi|229788031|gb|EEP24145.1| hypothetical protein GCWU000182_03224 [Abiotrophia defectiva ATCC 49176] Length = 1179 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 27/81 (33%), Gaps = 15/81 (18%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITI------------ESGPRCHDGTRRTVR 95 RG N ++ C+ C LC +CP AI ES + Sbjct: 678 RGIAVEVPVWN-KDTCLQCNLCSYVCPHAAIRPAVMDEEEAAKAPESMKMVDMKGMPGKK 736 Query: 96 YDIDMI--KCIYCGLCQEACP 114 + I + C CG C CP Sbjct: 737 FAITVSVLDCTGCGSCVNVCP 757 >gi|195058500|ref|XP_001995454.1| GH17755 [Drosophila grimshawi] gi|193896240|gb|EDV95106.1| GH17755 [Drosophila grimshawi] Length = 1033 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 23/83 (27%), Gaps = 10/83 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP-VDA 117 ++ CI C C C + C C LC CP +D Sbjct: 949 NDDMCINCGKCYMTCA-------DSGYQAIEFDKNTHLPHVNDDCTGCTLCVSVCPIIDC 1001 Query: 118 IVEGPNFEFATETRQELYYDKER 140 I P R +K++ Sbjct: 1002 IRMEPKQIPHIIKRG--VEEKDK 1022 >gi|189485593|ref|YP_001956534.1| hypothetical protein TGRD_590 [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170287552|dbj|BAG14073.1| conserved hypothetical protein [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 378 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 29/74 (39%), Gaps = 10/74 (13%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G+ + E+ C+ C LC CPA+AI H ID KCI C Sbjct: 304 GKFLWVKADINEKICVKCMLCARACPAEAIRAAGNQYPH----------IDAEKCISCFC 353 Query: 109 CQEACPVDAIVEGP 122 C E CP A+ Sbjct: 354 CHEMCPHKAVKFKK 367 >gi|229580878|ref|YP_002839277.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus islandicus Y.N.15.51] gi|228011594|gb|ACP47355.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus islandicus Y.N.15.51] Length = 398 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 5/78 (6%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 +R + + IAC C+ Q + + G R I KCI Sbjct: 32 NWRSLIVMPYGESKTALSIACNHCDNPTCMQVCPANAIEKNEMGIVR-----IRDDKCIG 86 Query: 106 CGLCQEACPVDAIVEGPN 123 CG C ACP +A+ Sbjct: 87 CGFCTWACPYEALKFNNE 104 Score = 37.8 bits (86), Expect = 0.51, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 24/101 (23%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 + P ++ + +++CI C C CP +A+ + Sbjct: 54 HCDNPTCMQVCPANAIEKNEMGIVRIRDDKCIGCGFCTWACPYEALKFNNEG-------- 105 Query: 93 TVRYDIDMIKCIYCGL----------CQEACPVDAIVEGPN 123 M KC +C C EACP A+ G Sbjct: 106 ------IMTKCNFCYARLAEGKGIPYCVEACPTGALAFGWI 140 >gi|150402634|ref|YP_001329928.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanococcus maripaludis C7] gi|150033664|gb|ABR65777.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus maripaludis C7] Length = 252 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 26/87 (29%), Positives = 32/87 (36%), Gaps = 11/87 (12%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P A + CI C +C ICP AI E G Sbjct: 174 CPKSSIKVENEMGEIPAENVISLNNDTCINCMVCSEICPVGAIVYEDG-----------S 222 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGP 122 +D KCI+CG C++ CPV AI P Sbjct: 223 MKLDDKKCIFCGKCEKNCPVSAIEIKP 249 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 10/77 (12%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 + L+++ EE CI C +CE CP AI +E + DI++ C+ C Sbjct: 119 HRKIRLKKHELDEESCIKCGICERFCPTSAIKVE----------KRNSIDINLDLCMGCT 168 Query: 108 LCQEACPVDAIVEGPNF 124 C++ CP +I Sbjct: 169 ACEKVCPKSSIKVENEM 185 Score = 41.2 bits (95), Expect = 0.053, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 32/82 (39%), Gaps = 9/82 (10%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 E + R +C+ C+LC +CP QAIT S + Sbjct: 23 EESVKKKLKDIIVPVERNLYVETNKCVRCELCYEVCPVQAITEPSVKNPA---------E 73 Query: 98 IDMIKCIYCGLCQEACPVDAIV 119 I KC+ C +C + CPV AI Sbjct: 74 IIPEKCVKCEICAKTCPVGAIN 95 Score = 38.2 bits (87), Expect = 0.36, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 15/74 (20%) Query: 60 EERCIACKLCEAICPAQAI---------------TIESGPRCHDGTRRTVRYDIDMIKCI 104 E+C+ C++C CP AI R ++++D CI Sbjct: 76 PEKCVKCEICAKTCPVGAINVLEGRAELKNDDVIYELKEIDVTHRKIRLKKHELDEESCI 135 Query: 105 YCGLCQEACPVDAI 118 CG+C+ CP AI Sbjct: 136 KCGICERFCPTSAI 149 >gi|115718576|ref|XP_001203141.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] gi|115774766|ref|XP_001182876.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 586 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 22/56 (39%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 K C C + G C + T + I CI CG+C + CP +AI Sbjct: 21 KKCRQECRKSCPVVRMGKLCIEVTPASKIAYISEQLCIGCGICVKKCPFEAIHIIN 76 >gi|49082640|gb|AAT50720.1| PA3490 [synthetic construct] Length = 189 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 25/70 (35%), Gaps = 10/70 (14%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 R E CI C C CP AI + + + + +C C LC E C Sbjct: 104 RVAYIREAECIGCTKCIQACPVDAIVGAA----------RLMHTVIADECTGCDLCLEPC 153 Query: 114 PVDAIVEGPN 123 PVD I Sbjct: 154 PVDCIEMREI 163 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 16/38 (42%) Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E P I +CI C C +ACPVDAI Sbjct: 91 EPEPLDAAEETPPRVAYIREAECIGCTKCIQACPVDAI 128 >gi|85857951|ref|YP_460153.1| pyruvate dehydrogenase (ferredoxin/flavodoxin-dependent) [Syntrophus aciditrophicus SB] gi|85721042|gb|ABC75985.1| pyruvate dehydrogenase (ferredoxin/flavodoxin-dependent) [Syntrophus aciditrophicus SB] Length = 1172 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 16/91 (17%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPR 85 +TS + A+ E CI C C +CP +A + Sbjct: 664 PTATSQYEKRGVAIHVPEWIPENCIQCNQCSFVCPHASIRPVLVTEEELKEAPDYFTTLE 723 Query: 86 CHDGTRRTVRYDID--MIKCIYCGLCQEACP 114 + +R+ I + C+ CG C + CP Sbjct: 724 AQGKELKGLRFRIQVSPLDCVGCGNCADICP 754 >gi|302671382|ref|YP_003831342.1| electron transport complex RnfB [Butyrivibrio proteoclasticus B316] gi|302395855|gb|ADL34760.1| electron transport complex RnfB [Butyrivibrio proteoclasticus B316] Length = 266 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 11/84 (13%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P++ + + + CIAC +CE CPA AIT+E+ Sbjct: 192 IPYDAQESVACKSQDMGKLVNGYCKVGCIACHICEKNCPAGAITVENNVAS--------- 242 Query: 96 YDIDMIKCIYCGLCQEACPVDAIV 119 ID KC +CG C CP AI Sbjct: 243 --IDQEKCTHCGTCVSKCPKKAIQ 264 >gi|304317659|ref|YP_003852804.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302779161|gb|ADL69720.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 1175 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 28/84 (33%), Gaps = 18/84 (21%) Query: 57 PNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRRTV-----------RYDIDM 100 + CI C C +CP AI E +G R + + Sbjct: 683 EWQIDNCIQCNQCAYVCPHAAIRPFLLNEEEVKNAPEGFTSKKAIGKGLEGLNFRIQVSV 742 Query: 101 IKCIYCGLCQEACP--VDAIVEGP 122 + C CG+C CP A+V P Sbjct: 743 LDCTGCGVCANTCPSKEKALVMKP 766 >gi|296109959|ref|YP_003616908.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus infernus ME] gi|295434773|gb|ADG13944.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus infernus ME] Length = 365 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 34/90 (37%), Gaps = 9/90 (10%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + ++ Y EE CI C+ C +C AITI + Sbjct: 245 CPTTAIRVRKEPIAKEKVKCYVVLEEDCIGCRACYKVCKFGAITISKKTKLPY------- 297 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 I KCI CGLC+ CPVD I E Sbjct: 298 --ILPDKCIVCGLCERECPVDTIKLVNIDE 325 Score = 41.6 bits (96), Expect = 0.039, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 43/114 (37%), Gaps = 19/114 (16%) Query: 9 SFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKL 68 S ++ E V L E PRFR + +YP +CI+C+ Sbjct: 4 SIFYIYEIVKRIKRVL--------DAKTKKEDYEDKPRFRKVPPIVKYPE---KCISCEA 52 Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ CPA+AI + + +I++ CI C C E CP + Sbjct: 53 CKESCPAKAIEMVEREK--------KIPNIEVDSCIACLNCVEVCPTGVLELDK 98 Score = 37.0 bits (84), Expect = 0.85, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 3/60 (5%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C C +CP AI + P + + Y + CI C C + C AI Sbjct: 235 CLNCFYCLEVCPTTAIRVRKEPIAKE---KVKCYVVLEEDCIGCRACYKVCKFGAITISK 291 Score = 35.5 bits (80), Expect = 2.5, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 21/64 (32%), Gaps = 11/64 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 EE C C CE CP I Y ID+ +CI C C Sbjct: 111 PKFHYLQIDEEVCANCGKCERACPIGVIHKTEKA-----------YKIDVERCITCKRCL 159 Query: 111 EACP 114 E CP Sbjct: 160 EVCP 163 >gi|298530405|ref|ZP_07017807.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfonatronospira thiodismutans ASO3-1] gi|298509779|gb|EFI33683.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfonatronospira thiodismutans ASO3-1] Length = 280 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 7/76 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+C+AC C CP Q + ++ + +C CG C +ACP +A+ Sbjct: 118 DSEKCMACGYCVDACPFQHPEL-------SRFTYFSLRNVWINRCTACGACAQACPENAL 170 Query: 119 VEGPNFEFATETRQEL 134 G E ++ L Sbjct: 171 FFGFRNELMDMAKKRL 186 Score = 33.9 bits (76), Expect = 8.1, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 24/80 (30%), Gaps = 6/80 (7%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK---CIYC--GLCQEA 112 +CI C +CE C E + I + + C+ C C A Sbjct: 42 YDSIKCINCGICERTCERVNGLPEEHNVIRMSQKAAPGTPIHITRRHSCMQCIRPSCARA 101 Query: 113 CPVDAIVEGPNFEFATETRQ 132 CP A F + + Sbjct: 102 CPTGA-TYKDEFGLVSFDSE 120 >gi|126643933|ref|XP_001388150.1| RNase L inhibitor-like protein [Cryptosporidium parvum Iowa II] gi|126117227|gb|EAZ51327.1| RNase L inhibitor-like protein [Cryptosporidium parvum Iowa II] Length = 618 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 1/86 (1%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P + + E LR +RC K C C + + +G C + + Sbjct: 3 PKKSTKSGGGDENESRLRIAIVEADRCKP-KNCRQECKSFCPVVRTGKLCVEVDSSSKIA 61 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGP 122 I CI CG+C + CP AI Sbjct: 62 SISEPLCIGCGICVKKCPYSAITIIN 87 >gi|158520198|ref|YP_001528068.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfococcus oleovorans Hxd3] gi|158509024|gb|ABW65991.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus oleovorans Hxd3] Length = 355 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 10/63 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C+ C C A+ ++ ++ +CI CGLC CP +A+ Sbjct: 275 DRDACTGCETCVDRCQTNALAMDDDGLAV----------LNPDRCIGCGLCVITCPSEAL 324 Query: 119 VEG 121 Sbjct: 325 SLQ 327 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 21/67 (31%), Gaps = 4/67 (5%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 N + C C C + QAI P T D C C C + C + Sbjct: 237 QNPDGMCNCCGDCCGVL--QAINFHPKPAEAVSTNHYAVLD--RDACTGCETCVDRCQTN 292 Query: 117 AIVEGPN 123 A+ + Sbjct: 293 ALAMDDD 299 >gi|153951992|ref|YP_001397336.1| iron-sulfur cluster binding protein [Campylobacter jejuni subsp. doylei 269.97] gi|152939438|gb|ABS44179.1| iron-sulfur cluster binding protein [Campylobacter jejuni subsp. doylei 269.97] Length = 479 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 22/89 (24%), Gaps = 10/89 (11%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-----QAITIESGPRCHDGTRR 92 R + RCI C C CP + P Sbjct: 287 EVHVILFDHNRSKMLSHEDYYEALRCIRCGACMNFCPVYDQIGGHAYQTTYPGPIGEVIS 346 Query: 93 TVRYDIDM-----IKCIYCGLCQEACPVD 116 + ID C CG C E CPV Sbjct: 347 PNIFGIDHTGDILNFCSLCGRCSEVCPVQ 375 >gi|91092422|ref|XP_968009.1| PREDICTED: similar to ribonuclease L inhibitor homolog [Tribolium castaneum] gi|270004744|gb|EFA01192.1| hypothetical protein TcasGA2_TC010519 [Tribolium castaneum] Length = 608 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 22/56 (39%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 K C C + G C + T + I CI CG+C + CP +AI Sbjct: 27 KRCRQECKKSCPVVRMGKLCIEVTPNSKMAAISEELCIGCGICVKKCPFEAITIIN 82 >gi|52424976|ref|YP_088113.1| electron transport complex protein RnfB [Mannheimia succiniciproducens MBEL55E] gi|52307028|gb|AAU37528.1| unknown [Mannheimia succiniciproducens MBEL55E] Length = 196 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 21/64 (32%), Gaps = 10/64 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E+ CI C C CP AI + + + C C LC CP D Sbjct: 107 FIHEDMCIGCTKCIQACPVDAIIGTNK----------SLHTVIPDLCTGCELCVAPCPTD 156 Query: 117 AIVE 120 I Sbjct: 157 CIKM 160 Score = 37.4 bits (85), Expect = 0.65, Method: Composition-based stats. Identities = 12/25 (48%), Positives = 14/25 (56%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 I CI C C +ACPVDAI+ Sbjct: 108 IHEDMCIGCTKCIQACPVDAIIGTN 132 >gi|20093031|ref|NP_619106.1| hypothetical protein MA4241 [Methanosarcina acetivorans C2A] gi|19918353|gb|AAM07586.1| hypothetical protein MA_4241 [Methanosarcina acetivorans C2A] Length = 310 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 22/70 (31%), Gaps = 14/70 (20%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L E C C +C +C A + I+ C C +C A Sbjct: 58 LELASVDSELCTGCGICREVCRFGA--------------VLENFTINPYSCEGCAVCTVA 103 Query: 113 CPVDAIVEGP 122 CP A+ P Sbjct: 104 CPEKAVCLTP 113 >gi|70939748|ref|XP_740377.1| RNAse L inhibitor protein [Plasmodium chabaudi chabaudi] gi|56518050|emb|CAH87759.1| RNAse L inhibitor protein, putative [Plasmodium chabaudi chabaudi] Length = 453 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 1/70 (1%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 LR ++C K C C +++G C + + I + CI CG+C + Sbjct: 20 LRIAIVSTDKCKP-KKCHLECKKNCPIVKTGKFCIEVDHSSKIAFISEMLCIGCGICVKK 78 Query: 113 CPVDAIVEGP 122 CP +I Sbjct: 79 CPFSSITIIN 88 >gi|329766586|ref|ZP_08258129.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Candidatus Nitrosoarchaeum limnia SFB1] gi|329136841|gb|EGG41134.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Candidatus Nitrosoarchaeum limnia SFB1] Length = 100 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 1/69 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+RCI C LC IC + G +R + +CI G C CP +I Sbjct: 10 DEQRCIGCALCVEICTTLGPDVLRVKPVE-GWKRGKAFVFYPERCISDGACIGVCPTKSI 68 Query: 119 VEGPNFEFA 127 + Sbjct: 69 FWMRPMNYT 77 >gi|296132263|ref|YP_003639510.1| NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding protein [Thermincola sp. JR] gi|296030841|gb|ADG81609.1| NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding protein [Thermincola potens JR] Length = 310 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 3/77 (3%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY---DIDMI 101 +R + + +CI C C A C A + + D+ Sbjct: 130 HAYRPDDSNPYIYRDLNKCILCGKCVATCNAVQERSVINFAYRGFNTKIATFLDTDLKDS 189 Query: 102 KCIYCGLCQEACPVDAI 118 +C+YC C CPV AI Sbjct: 190 ECVYCNRCVAVCPVGAI 206 >gi|289422898|ref|ZP_06424727.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Peptostreptococcus anaerobius 653-L] gi|289156685|gb|EFD05321.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Peptostreptococcus anaerobius 653-L] Length = 296 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 15/69 (21%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + RY +++CI C C+ +C +E + + ++CI CG C+ A Sbjct: 240 IFRYRLDKDKCINCGRCKKVCQMNINPVE---------------NCNHLECIRCGRCKNA 284 Query: 113 CPVDAIVEG 121 CPVDAI G Sbjct: 285 CPVDAISCG 293 >gi|258514863|ref|YP_003191085.1| sulfite reductase, subunit C [Desulfotomaculum acetoxidans DSM 771] gi|257778568|gb|ACV62462.1| sulfite reductase, subunit C [Desulfotomaculum acetoxidans DSM 771] Length = 327 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 8/89 (8%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + + G + ERCI CK C + C S + + Sbjct: 149 CPNDCIKAHMQDVGIMGMVEPVYRRERCIGCKACVSNC--------SKVSAGALSFINYK 200 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 + D +CI CG C CP A V G N+ Sbjct: 201 VERDEKRCIGCGECILKCPSSAWVRGDNY 229 >gi|257063495|ref|YP_003143167.1| 4Fe-4S protein [Slackia heliotrinireducens DSM 20476] gi|256791148|gb|ACV21818.1| 4Fe-4S protein [Slackia heliotrinireducens DSM 20476] Length = 292 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 7/73 (9%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G L + CI+C LC+ C +++ + C+ CG Sbjct: 218 GAVGLLSVKIDHDACISCNLCKKACLCDPSILDAAVAGEAD-------RVASGDCMLCGK 270 Query: 109 CQEACPVDAIVEG 121 C + CP DA+ G Sbjct: 271 CVDHCPKDALKIG 283 >gi|220905128|ref|YP_002480440.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219869427|gb|ACL49762.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 351 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 11/69 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L +E+C AC C +C +AI I G I C CG C Sbjct: 57 LPVPELNKEKCTACGACGEMCAYKAIAILGGKPV-----------IFSDMCHGCGGCFAV 105 Query: 113 CPVDAIVEG 121 CP A+ EG Sbjct: 106 CPSGALDEG 114 >gi|78222936|ref|YP_384683.1| aldo/keto reductase family oxidoreductase [Geobacter metallireducens GS-15] gi|78194191|gb|ABB31958.1| Oxidoreductase, aldo/keto reductase family [Geobacter metallireducens GS-15] Length = 316 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 11/58 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C C C + A+T+ +G +D CI CG C +CP I Sbjct: 267 NFCKGCGGCVEACASGALTVVNGKAV-----------LDEAACILCGYCAASCPEFII 313 >gi|114319379|ref|YP_741062.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Alkalilimnicola ehrlichii MLHE-1] gi|114225773|gb|ABI55572.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Alkalilimnicola ehrlichii MLHE-1] Length = 428 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 28/72 (38%), Gaps = 7/72 (9%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 + L + C ++C A+CP A+ D D + CI CGLC Sbjct: 278 PNTLFPQAKISDACCNHRICAALCPTGALQPVEDEDGSG-------LDYDPLFCIRCGLC 330 Query: 110 QEACPVDAIVEG 121 Q+ CP AI Sbjct: 331 QQVCPEKAITIT 342 Score = 38.9 bits (89), Expect = 0.23, Method: Composition-based stats. Identities = 22/88 (25%), Positives = 26/88 (29%), Gaps = 19/88 (21%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIA-------CKLCEAICPAQAITIESGPRCHDGTR 91 E S R A E C+ C+ C CP A+T G Sbjct: 14 ESAEQSAWHRLSDAQPWLLWQENACLPARSPLSDCRACSQACPVDALTATPKGPQLTG-- 71 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIV 119 C+ CG C ACP AI Sbjct: 72 ----------DCVACGRCTAACPTGAIN 89 >gi|167037864|ref|YP_001665442.1| hydrogenase, Fe-only [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116281|ref|YP_004186440.1| hydrogenase, Fe-only [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856698|gb|ABY95106.1| hydrogenase, Fe-only [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929372|gb|ADV80057.1| hydrogenase, Fe-only [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 581 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 3/67 (4%) Query: 59 GEERCIACKLCEAIC-PAQAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPV 115 +C+ C+ C A+C Q + T + + CI CG C E CPV Sbjct: 144 DPNKCVLCRRCVAVCSEVQNVFAIGMVNRGFKTMVAPSFGRSLKDSPCISCGQCIEVCPV 203 Query: 116 DAIVEGP 122 AI E Sbjct: 204 GAIYEKD 210 >gi|229585998|ref|YP_002844500.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus islandicus M.16.27] gi|228021048|gb|ACP56455.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus islandicus M.16.27] Length = 398 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 5/78 (6%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 +R + + IAC C+ Q + + G R I KCI Sbjct: 32 NWRSLIVMPYGESRTALSIACNHCDNPTCMQVCPANAIEKNEMGIVR-----IRDDKCIG 86 Query: 106 CGLCQEACPVDAIVEGPN 123 CG C ACP +A+ Sbjct: 87 CGFCTWACPYEALKFNNE 104 Score = 37.8 bits (86), Expect = 0.52, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 24/101 (23%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 + P ++ + +++CI C C CP +A+ + Sbjct: 54 HCDNPTCMQVCPANAIEKNEMGIVRIRDDKCIGCGFCTWACPYEALKFNNEG-------- 105 Query: 93 TVRYDIDMIKCIYCGL----------CQEACPVDAIVEGPN 123 M KC +C C EACP A+ G Sbjct: 106 ------IMTKCNFCYARLAEGKGIPYCVEACPTGALAFGWI 140 >gi|170290904|ref|YP_001737720.1| 2-oxoacid:ferredoxin oxidoreductase, delta subunit [Candidatus Korarchaeum cryptofilum OPF8] gi|170174984|gb|ACB08037.1| 2-oxoacid:ferredoxin oxidoreductase, delta subunit [Candidatus Korarchaeum cryptofilum OPF8] Length = 89 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 10/66 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E +CI C LC CP + I+ ID+ C CG+C + CP AI Sbjct: 33 NESKCIKCWLCWLYCPEEVISEGENGFPV----------IDLSYCKGCGVCADVCPAKAI 82 Query: 119 VEGPNF 124 + Sbjct: 83 EMVREY 88 >gi|187251479|ref|YP_001875961.1| putative Indolepyruvate ferredoxin oxidoreductase [Elusimicrobium minutum Pei191] gi|186971639|gb|ACC98624.1| Putative indolepyruvate ferredoxin oxidoreductase [Elusimicrobium minutum Pei191] Length = 56 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 22/65 (33%), Positives = 26/65 (40%), Gaps = 11/65 (16%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + CI C CE CP AI+ + G R ID CI CG C +C Sbjct: 1 MAHKIDGAVCINCGACEGTCPVSAISEQDGKRV-----------IDPAVCIDCGACVSSC 49 Query: 114 PVDAI 118 PV I Sbjct: 50 PVSCI 54 >gi|158522645|ref|YP_001530515.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfococcus oleovorans Hxd3] gi|158511471|gb|ABW68438.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus oleovorans Hxd3] Length = 392 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 11/62 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C +C C AI ++ +D+ KCI CGLC C AI Sbjct: 297 DNDACNGCGVCVRRCQMGAIEVKEKKAH-----------LDVGKCIGCGLCVTTCKTGAI 345 Query: 119 VE 120 Sbjct: 346 RL 347 >gi|311747837|ref|ZP_07721622.1| putative 4Fe-4S binding domain protein [Algoriphagus sp. PR1] gi|126575828|gb|EAZ80138.1| putative 4Fe-4S binding domain protein [Algoriphagus sp. PR1] Length = 514 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 10/67 (14%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R + R NG +CI+C C C R +I C+ CG Sbjct: 427 RFKSRFRITTNG-GQCISCGNCSTYCEMGIDVRWYAQRGQ---------NIVRSSCVGCG 476 Query: 108 LCQEACP 114 +C CP Sbjct: 477 VCSSVCP 483 >gi|160878248|ref|YP_001557216.1| hydrogenase, Fe-only [Clostridium phytofermentans ISDg] gi|160426914|gb|ABX40477.1| hydrogenase, Fe-only [Clostridium phytofermentans ISDg] Length = 567 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 20/64 (31%), Gaps = 5/64 (7%) Query: 59 GEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 +CI C C +C AI + I C+ CG C CP Sbjct: 142 DPGKCILCGDCVRMCNEIQNVGAIDF-AHRGAKMIVSPAFNKKIAETNCVNCGQCAAVCP 200 Query: 115 VDAI 118 AI Sbjct: 201 TAAI 204 >gi|90022046|ref|YP_527873.1| electron transport complex protein RnfC [Saccharophagus degradans 2-40] gi|89951646|gb|ABD81661.1| serine/threonine protein kinase [Saccharophagus degradans 2-40] Length = 745 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 9/58 (15%) Query: 61 ERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + CI C +C CPA Q + S HD + +D CI CG C CP Sbjct: 368 QACIRCGMCAEACPASLLPQQLFWYSQAEDHDRLKAHNLFD-----CIECGACSYVCP 420 >gi|57241957|ref|ZP_00369897.1| iron-sulfur cluster binding protein [Campylobacter upsaliensis RM3195] gi|57017149|gb|EAL53930.1| iron-sulfur cluster binding protein [Campylobacter upsaliensis RM3195] Length = 473 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 21/88 (23%), Gaps = 10/88 (11%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ----------AITIESGPRCH 87 R + + RCI C C CP G Sbjct: 283 EVHIVLFDHHRSDMLAHKDYYEALRCIRCGACMNFCPVYDKIGGHSYQTVYPGPIGEVIS 342 Query: 88 DGTRRTVRYDIDMIKCIYCGLCQEACPV 115 + + C CG C E CPV Sbjct: 343 PNLFGMDKTGDILNFCSLCGRCSEVCPV 370 >gi|117923998|ref|YP_864615.1| electron transport complex, RnfABCDGE type, C subunit [Magnetococcus sp. MC-1] gi|117607754|gb|ABK43209.1| electron transport complex, RnfABCDGE type, C subunit [Magnetococcus sp. MC-1] Length = 605 Score = 44.3 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 2/70 (2%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 N E CI C C +CP + E + D D+ CI CG C CP Sbjct: 368 DNPEGPCIRCAKCVNVCPMSLMPNEMA-WLAKNDQFDALADHDLFDCIECGTCSYVCP-S 425 Query: 117 AIVEGPNFEF 126 +I F + Sbjct: 426 SIPLVHYFRY 435 >gi|295106347|emb|CBL03890.1| Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Gordonibacter pamelaeae 7-10-1-b] Length = 727 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 1/64 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C CK C I + R R + +D C CGLC + CP A+ Sbjct: 635 DADACTGCKKCITEIGCPGIGFDGDARGPKSKERGQAF-VDASLCNGCGLCTQVCPFGAL 693 Query: 119 VEGP 122 P Sbjct: 694 GVPP 697 >gi|268607923|ref|ZP_06141654.1| hydrogenase, Fe-only [Ruminococcus flavefaciens FD-1] Length = 582 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 16/95 (16%) Query: 55 RYPNGEERCIACKLCEAIC-PAQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQE 111 +CI C+ C A+C Q I + T +D+ + + C+ CG C Sbjct: 143 HMYRDNNKCILCRRCVAVCAKTQGIGVIGANERGFKTYIGSAFDMGLGETSCVSCGQCIA 202 Query: 112 ACPVDAIVEGPNFEFATETRQELYYDKERLLNNGD 146 CPV A+ E Y KE + D Sbjct: 203 VCPVGALSEKD-------------YTKEVMAAIAD 224 >gi|259145334|emb|CAY78598.1| Rli1p [Saccharomyces cerevisiae EC1118] Length = 608 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 3/68 (4%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP---N 123 K C C +++G C + T + I I CI CG+C + CP DAI N Sbjct: 19 KKCRQECKRSCPVVKTGKLCIEVTPTSKIAFISEILCIGCGICVKKCPFDAIQIINLPTN 78 Query: 124 FEFATETR 131 E R Sbjct: 79 LEAHVTHR 86 >gi|237795647|ref|YP_002863199.1| CobQ/CobB/MinD/ParA family protein [Clostridium botulinum Ba4 str. 657] gi|229262837|gb|ACQ53870.1| CobQ/CobB/MinD/ParA family protein [Clostridium botulinum Ba4 str. 657] Length = 281 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 15/67 (22%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 ++ CI C C++IC AI + ID C CG C CP++ Sbjct: 61 NIDKDICIKCGKCKSICKFDAIEN---------------FKIDPFLCEGCGTCTLICPLN 105 Query: 117 AIVEGPN 123 AI Sbjct: 106 AIKLEDE 112 >gi|256371676|ref|YP_003109500.1| protein of unknown function DUF224 cysteine-rich region domain protein [Acidimicrobium ferrooxidans DSM 10331] gi|256008260|gb|ACU53827.1| protein of unknown function DUF224 cysteine-rich region domain protein [Acidimicrobium ferrooxidans DSM 10331] Length = 386 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 7/65 (10%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-------DIDMIKCIYCGLCQ 110 + + CI C LC+ +CP + G R+ D +C +C LC+ Sbjct: 11 DNADACIKCGLCQLVCPVLEVDPAFSGPKVLGPDWHRRFVAGERVTDDTAARCTFCQLCE 70 Query: 111 EACPV 115 CPV Sbjct: 71 SVCPV 75 >gi|227828791|ref|YP_002830571.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus islandicus M.14.25] gi|238620983|ref|YP_002915809.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus islandicus M.16.4] gi|227460587|gb|ACP39273.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus islandicus M.14.25] gi|238382053|gb|ACR43141.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus islandicus M.16.4] Length = 398 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 5/78 (6%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 +R + + IAC C+ Q + + G R I KCI Sbjct: 32 NWRSLIVMPYGESKTALSIACNHCDNPTCMQVCPANAIEKNEMGIVR-----IRDDKCIG 86 Query: 106 CGLCQEACPVDAIVEGPN 123 CG C ACP +A+ Sbjct: 87 CGFCTWACPYEALKFNNE 104 Score = 37.8 bits (86), Expect = 0.51, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 24/101 (23%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 + P ++ + +++CI C C CP +A+ + Sbjct: 54 HCDNPTCMQVCPANAIEKNEMGIVRIRDDKCIGCGFCTWACPYEALKFNNEG-------- 105 Query: 93 TVRYDIDMIKCIYCGL----------CQEACPVDAIVEGPN 123 M KC +C C EACP A+ G Sbjct: 106 ------IMTKCNFCYARLAEGKGIPYCVEACPTGALAFGWI 140 >gi|239624676|ref|ZP_04667707.1| nitroreductase family protein fused to ferredoxin domain [Clostridiales bacterium 1_7_47_FAA] gi|239521062|gb|EEQ60928.1| nitroreductase family protein fused to ferredoxin domain [Clostridiales bacterium 1_7_47FAA] Length = 266 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 17/109 (15%), Positives = 36/109 (33%), Gaps = 16/109 (14%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C C +C +C I +E G + +C+ C C CP Sbjct: 1 MIHINRDLCTGCGVCVKVCSMACIVLEEEKAVFKGEK----------RCMTCAHCMAVCP 50 Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 A+ ++ + + + + L + + ++ +V YR Sbjct: 51 QKAVC-TDRYDNS----ESVEMTPDIPLASPEEMKNRMVLRRSI-RAYR 93 >gi|168334532|ref|ZP_02692693.1| Anaerobic sulfite reduction protein C, reductase [Epulopiscium sp. 'N.t. morphotype B'] Length = 320 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 28/83 (33%), Gaps = 8/83 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + G + + RC++C C +C +++ G R Sbjct: 145 CPNDCAKARMNDFGIIGMTLPQFDKNRCVSCGACVRMCAKKSVKALEGINY--------R 196 Query: 96 YDIDMIKCIYCGLCQEACPVDAI 118 + KCI CG C CP A Sbjct: 197 PVRNHEKCIGCGECIVNCPTMAW 219 >gi|77164682|ref|YP_343207.1| electron transport complex, RnfABCDGE type, B subunit [Nitrosococcus oceani ATCC 19707] gi|254434195|ref|ZP_05047703.1| electron transport complex, RnfABCDGE type, B subunit subfamily [Nitrosococcus oceani AFC27] gi|76882996|gb|ABA57677.1| Electron transport complex, RnfABCDGE type, B subunit [Nitrosococcus oceani ATCC 19707] gi|207090528|gb|EDZ67799.1| electron transport complex, RnfABCDGE type, B subunit subfamily [Nitrosococcus oceani AFC27] Length = 209 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 23/84 (27%), Positives = 28/84 (33%), Gaps = 10/84 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 ++ R E E RCI C LC CP AI + + Sbjct: 88 QEPKPLDPERQEKLKALAVIDENRCIGCTLCIQACPVDAILGAPKQ----------LHTV 137 Query: 99 DMIKCIYCGLCQEACPVDAIVEGP 122 +C C LC CPVD I P Sbjct: 138 ITAECTGCELCVAPCPVDCIEMVP 161 >gi|15893326|ref|NP_346675.1| hydrogene dehydrogenase [Clostridium acetobutylicum ATCC 824] gi|15022848|gb|AAK78015.1|AE007516_6 Hydrogene dehydrogenase [Clostridium acetobutylicum ATCC 824] gi|557064|gb|AAB03723.1| hydrogenase I [Clostridium acetobutylicum ATCC 824] gi|325507435|gb|ADZ19071.1| Hydrogene dehydrogenase [Clostridium acetobutylicum EA 2018] Length = 582 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 30/78 (38%), Gaps = 3/78 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPV 115 +C+ C C A C T DG R D +D C+ CG C ACPV Sbjct: 142 DRSKCVLCGRCVAACKQHTSTCSIQFIKKDGQRAVGTVDDVCLDDSTCLLCGQCVIACPV 201 Query: 116 DAIVEGPNFEFATETRQE 133 A+ E + E E + Sbjct: 202 AALKEKSHIEKVQEALND 219 >gi|6320296|ref|NP_010376.1| Rli1p [Saccharomyces cerevisiae S288c] gi|74676343|sp|Q03195|RLI1_YEAST RecName: Full=Translation initiation factor RLI1; AltName: Full=ATP-binding cassette sub-family E member RLI1; AltName: Full=RNase L inhibitor gi|914875|emb|CAA90450.1| unknown [Saccharomyces cerevisiae] gi|51830238|gb|AAU09693.1| YDR091C [Saccharomyces cerevisiae] gi|151942081|gb|EDN60437.1| RNAse L inhibitor [Saccharomyces cerevisiae YJM789] gi|190404942|gb|EDV08209.1| ATP-binding cassette sub-family E member 1 [Saccharomyces cerevisiae RM11-1a] gi|207346760|gb|EDZ73159.1| YDR091Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi|256269844|gb|EEU05103.1| Rli1p [Saccharomyces cerevisiae JAY291] gi|285811114|tpg|DAA11938.1| TPA: Rli1p [Saccharomyces cerevisiae S288c] gi|323338297|gb|EGA79527.1| Rli1p [Saccharomyces cerevisiae Vin13] Length = 608 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 3/68 (4%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP---N 123 K C C +++G C + T + I I CI CG+C + CP DAI N Sbjct: 19 KKCRQECKRSCPVVKTGKLCIEVTPTSKIAFISEILCIGCGICVKKCPFDAIQIINLPTN 78 Query: 124 FEFATETR 131 E R Sbjct: 79 LEAHVTHR 86 >gi|323704847|ref|ZP_08116424.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323535773|gb|EGB25547.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 372 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 26/59 (44%), Gaps = 11/59 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 ++C AC+ C CP AI++ G ID KCI CG C C DAI Sbjct: 193 KKCTACQTCIKNCPEDAISLVDGKAY-----------IDPEKCIGCGECITMCQYDAIN 240 >gi|322369578|ref|ZP_08044142.1| formate dehydrogenase, alpha subunit [Haladaptatus paucihalophilus DX253] gi|320550748|gb|EFW92398.1| formate dehydrogenase, alpha subunit [Haladaptatus paucihalophilus DX253] Length = 1095 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 4/69 (5%) Query: 57 PNGEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 +CI C C C + IE + ++ + C+ CG C Sbjct: 204 QIDRNKCILCNRCVEACNDVQVEGVLRIEGQGQDTRIGFQSDAETMSDSTCVSCGHCATV 263 Query: 113 CPVDAIVEG 121 CP ++VE Sbjct: 264 CPTGSLVEQ 272 >gi|310828880|ref|YP_003961237.1| hypothetical protein ELI_3312 [Eubacterium limosum KIST612] gi|308740614|gb|ADO38274.1| hypothetical protein ELI_3312 [Eubacterium limosum KIST612] Length = 383 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 26/58 (44%), Gaps = 5/58 (8%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ERC+ C +C A CP + + TR + KCI C CQE CP AI Sbjct: 317 ERCVRCGICVASCPLEDKALTWKE-----TRNGRVPHYNYHKCIRCYCCQEMCPKKAI 369 >gi|256839685|ref|ZP_05545194.1| pyruvate formate-lyase 1-activating enzyme [Parabacteroides sp. D13] gi|256738615|gb|EEU51940.1| pyruvate formate-lyase 1-activating enzyme [Parabacteroides sp. D13] Length = 301 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 11/62 (17%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 ++CI C C CP A+T+ D C CG C E CP A+ Sbjct: 49 RKKCIGCGACVNACPTGALTLTEAGIVTD-----------RSLCRTCGRCAEVCPTLAME 97 Query: 120 EG 121 Sbjct: 98 MS 99 >gi|237712108|ref|ZP_04542589.1| ferredoxin [Bacteroides sp. 9_1_42FAA] gi|229453429|gb|EEO59150.1| ferredoxin [Bacteroides sp. 9_1_42FAA] Length = 315 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 27/76 (35%), Gaps = 8/76 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------DMIKCIYCGLCQ 110 EE+C AC C CP + I I + + CI CG C Sbjct: 172 DEEKCTACGACSKACPRKIIEIRPKGKNNRRVVVMCVNKDKGAVANKACKASCIGCGKCV 231 Query: 111 EACPVDAIVEGPNFEF 126 + CP +AI N + Sbjct: 232 KVCPFEAITLENNLAY 247 Score = 40.9 bits (94), Expect = 0.059, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 9/60 (15%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C C C AI + ++D KC CG C +ACP I P Sbjct: 145 CLGCGDCVEACQFDAIHMNPETGLP---------EVDEEKCTACGACSKACPRKIIEIRP 195 Score = 38.9 bits (89), Expect = 0.20, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 11/61 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI C C +CP +AIT+E+ ID KC C C+ CP AI Sbjct: 220 CKASCIGCGKCVKVCPFEAITLENNLAY-----------IDPAKCKSCRKCESECPKGAI 268 Query: 119 V 119 Sbjct: 269 Q 269 Score = 35.1 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 11/21 (52%), Positives = 12/21 (57%) Query: 103 CIYCGLCQEACPVDAIVEGPN 123 C+ CG C EAC DAI P Sbjct: 145 CLGCGDCVEACQFDAIHMNPE 165 >gi|227831524|ref|YP_002833304.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus islandicus L.S.2.15] gi|229580472|ref|YP_002838872.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus islandicus Y.G.57.14] gi|284999076|ref|YP_003420844.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Sulfolobus islandicus L.D.8.5] gi|227457972|gb|ACP36659.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus islandicus L.S.2.15] gi|228011188|gb|ACP46950.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus islandicus Y.G.57.14] gi|284446972|gb|ADB88474.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Sulfolobus islandicus L.D.8.5] gi|323475826|gb|ADX86432.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus islandicus REY15A] gi|323478601|gb|ADX83839.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfolobus islandicus HVE10/4] Length = 398 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 5/78 (6%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 +R + + IAC C+ Q + + G R I KCI Sbjct: 32 NWRSLIVMPYGESKTALSIACNHCDNPTCMQVCPANAIEKNEMGIVR-----IRDDKCIG 86 Query: 106 CGLCQEACPVDAIVEGPN 123 CG C ACP +A+ Sbjct: 87 CGFCTWACPYEALKFNNE 104 Score = 37.8 bits (86), Expect = 0.52, Method: Composition-based stats. Identities = 19/101 (18%), Positives = 31/101 (30%), Gaps = 24/101 (23%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 + P ++ + +++CI C C CP +A+ + Sbjct: 54 HCDNPTCMQVCPANAIEKNEMGIVRIRDDKCIGCGFCTWACPYEALKFNNEG-------- 105 Query: 93 TVRYDIDMIKCIYCGL----------CQEACPVDAIVEGPN 123 M KC +C C EACP A+ G Sbjct: 106 ------IMTKCNFCYARLAEGKGIPYCVEACPTGALAFGWI 140 >gi|288549934|ref|ZP_05968681.2| putative polyferredoxin [Enterobacter cancerogenus ATCC 35316] gi|288317249|gb|EFC56187.1| putative polyferredoxin [Enterobacter cancerogenus ATCC 35316] Length = 290 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 11/64 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+CI C C CP +AI E ++ +C CG C+ CP AI Sbjct: 188 DTEKCILCGACWRSCPEKAIRFEDNALV-----------MENARCTGCGGCEAVCPSHAI 236 Query: 119 VEGP 122 P Sbjct: 237 KVMP 240 Score = 41.6 bits (96), Expect = 0.040, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 24/53 (45%), Gaps = 11/53 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C +CPAQA ++ G ID +CI CG C CP DAI Sbjct: 25 CHACADVCPAQAFSVTDGQV-----------TIDPSRCIECGDCLFVCPTDAI 66 Score = 33.9 bits (76), Expect = 7.1, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 23/58 (39%), Gaps = 3/58 (5%) Query: 69 CEAICPAQAITIESGPRC-HDGTRRTVRYDIDMI--KCIYCGLCQEACPVDAIVEGPN 123 +A T++ G R R +D+ KCI CG C +CP AI N Sbjct: 155 HAPREDVKACTVQPGKRQLRQAFPRFSEFDVIPDTEKCILCGACWRSCPEKAIRFEDN 212 >gi|212691452|ref|ZP_03299580.1| hypothetical protein BACDOR_00944 [Bacteroides dorei DSM 17855] gi|237726262|ref|ZP_04556743.1| ferredoxin [Bacteroides sp. D4] gi|212666062|gb|EEB26634.1| hypothetical protein BACDOR_00944 [Bacteroides dorei DSM 17855] gi|229434788|gb|EEO44865.1| ferredoxin [Bacteroides dorei 5_1_36/D4] Length = 315 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 27/76 (35%), Gaps = 8/76 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------DMIKCIYCGLCQ 110 EE+C AC C CP + I I + + CI CG C Sbjct: 172 DEEKCTACGACSKACPRKIIEIRPKGKNNRRVVVMCVNKDKGAVANKACKASCIGCGKCV 231 Query: 111 EACPVDAIVEGPNFEF 126 + CP +AI N + Sbjct: 232 KVCPFEAITLENNLAY 247 Score = 41.2 bits (95), Expect = 0.050, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 9/60 (15%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C C +C AI + ++D KC CG C +ACP I P Sbjct: 145 CLGCGDCVEVCQFDAIHMNPETGLP---------EVDEEKCTACGACSKACPRKIIEIRP 195 Score = 38.9 bits (89), Expect = 0.21, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 11/61 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI C C +CP +AIT+E+ ID KC C C+ CP AI Sbjct: 220 CKASCIGCGKCVKVCPFEAITLENNLAY-----------IDPAKCKSCRKCESECPKGAI 268 Query: 119 V 119 Sbjct: 269 Q 269 Score = 35.5 bits (80), Expect = 2.5, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 11/21 (52%) Query: 103 CIYCGLCQEACPVDAIVEGPN 123 C+ CG C E C DAI P Sbjct: 145 CLGCGDCVEVCQFDAIHMNPE 165 >gi|194769374|ref|XP_001966779.1| GF19101 [Drosophila ananassae] gi|190618300|gb|EDV33824.1| GF19101 [Drosophila ananassae] Length = 1034 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 18/65 (27%), Gaps = 8/65 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP-VDA 117 ++ CI C C C + C C LC CP +D Sbjct: 952 NDDMCINCGKCYMTCA-------DSGYQAIEFDKETHIPHVNDDCTGCTLCVSVCPIIDC 1004 Query: 118 IVEGP 122 I P Sbjct: 1005 ISMVP 1009 >gi|153954875|ref|YP_001395640.1| Fe-only hydrogenase 1 [Clostridium kluyveri DSM 555] gi|219855329|ref|YP_002472451.1| hypothetical protein CKR_1986 [Clostridium kluyveri NBRC 12016] gi|146347733|gb|EDK34269.1| Predicted Fe-only hydrogenase 1 [Clostridium kluyveri DSM 555] gi|219569053|dbj|BAH07037.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 580 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 26/67 (38%), Gaps = 3/67 (4%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTR---RTVRYDIDMIKCIYCGLCQEACPV 115 +CI C C A C + T DG R D C+ CG C ACPV Sbjct: 141 DRTKCILCGRCVAACKVHSGTSVMQFIKKDGKRTVGIENNPCFDNSNCLLCGQCVIACPV 200 Query: 116 DAIVEGP 122 A+ E P Sbjct: 201 GALTEKP 207 >gi|57237082|ref|YP_178094.1| iron-sulfur cluster binding protein [Campylobacter jejuni RM1221] gi|57165886|gb|AAW34665.1| iron-sulfur cluster binding protein [Campylobacter jejuni RM1221] gi|315057515|gb|ADT71844.1| Predicted L-lactate dehydrogenase, Iron-sulfur cluster-binding subunit YkgF [Campylobacter jejuni subsp. jejuni S3] Length = 479 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 22/89 (24%), Gaps = 10/89 (11%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-----QAITIESGPRCHDGTRR 92 R + RCI C C CP + P Sbjct: 287 EVHVILFDHNRSKMLAHEDYYEALRCIRCGACMNFCPVYDQIGGHAYQTTYPGPIGEVIS 346 Query: 93 TVRYDIDM-----IKCIYCGLCQEACPVD 116 + ID C CG C E CPV Sbjct: 347 PNIFGIDHTGDILNFCSLCGRCSEVCPVQ 375 >gi|73670092|ref|YP_306107.1| sulfite reductase subunit beta [Methanosarcina barkeri str. Fusaro] gi|72397254|gb|AAZ71527.1| sulfite reductase, beta subunit [Methanosarcina barkeri str. Fusaro] Length = 285 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 25/89 (28%), Positives = 28/89 (31%), Gaps = 11/89 (12%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 P G EE C+ CKLCE C AI + Sbjct: 135 KIAVTGCPAACVRPQENDFGIMGTVMPKIVEENCVGCKLCEKACKVGAIKVLEDKAS--- 191 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ID KCI CG C AC DA+ Sbjct: 192 --------IDTEKCILCGACIAACRKDAL 212 >gi|94310165|ref|YP_583375.1| benzoyl-CoA oxygenase subunit A [Cupriavidus metallidurans CH34] gi|93354017|gb|ABF08106.1| Benzoyl-CoA oxygenase component A [Cupriavidus metallidurans CH34] Length = 415 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 25/67 (37%), Gaps = 11/67 (16%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 ++++ E CI C CE CP AIT + Y + C C C Sbjct: 6 IIKQHLIDPEICIRCNTCEDTCPIDAITHDD-----------RNYVVKADVCNACNACLS 54 Query: 112 ACPVDAI 118 CP AI Sbjct: 55 PCPTGAI 61 Score = 34.3 bits (77), Expect = 5.3, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 14/25 (56%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 ID CI C C++ CP+DAI Sbjct: 12 IDPEICIRCNTCEDTCPIDAITHDD 36 >gi|332797622|ref|YP_004459122.1| pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta [Acidianus hospitalis W1] gi|332695357|gb|AEE94824.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Acidianus hospitalis W1] Length = 86 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 27/75 (36%), Gaps = 10/75 (13%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G L R +C C+LC CP I + G ID C CG+ Sbjct: 20 GHWRLMRPEIDYSKCTKCRLCVIYCPENTIDLLEGFDV----------RIDYDYCKGCGV 69 Query: 109 CQEACPVDAIVEGPN 123 C + CP AI P Sbjct: 70 CAQICPQKAIQMVPE 84 Score = 34.3 bits (77), Expect = 6.4, Method: Composition-based stats. Identities = 14/37 (37%), Positives = 18/37 (48%) Query: 89 GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 G R +R +ID KC C LC CP + I F+ Sbjct: 20 GHWRLMRPEIDYSKCTKCRLCVIYCPENTIDLLEGFD 56 >gi|325299904|ref|YP_004259821.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides salanitronis DSM 18170] gi|324319457|gb|ADY37348.1| electron transport complex, RnfABCDGE type, C subunit [Bacteroides salanitronis DSM 18170] Length = 445 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 34/89 (38%), Gaps = 3/89 (3%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 KA I P KGS+ + RR + CI C C ++CP Sbjct: 333 MMGKALMNIEVPICKGSSGVLIMNDKEARRGA--PQPCIRCAKCVSVCPMGLEPYLLATC 390 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 G V +++ M CI CG CQ CP Sbjct: 391 SAHGDWERVEHEMIMS-CIECGSCQFTCP 418 >gi|319795633|ref|YP_004157273.1| 4fe-4S ferredoxin, iron-sulfur binding protein [Variovorax paradoxus EPS] gi|315598096|gb|ADU39162.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Variovorax paradoxus EPS] Length = 94 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 35/90 (38%), Gaps = 20/90 (22%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC------GLCQEACP 114 + CI C +CE CP AI + + Y+ID KC C C + CP Sbjct: 4 DECINCDVCEPECPNDAIYMGAE-----------YYEIDPHKCTECVGHFDEPQCVQICP 52 Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLNN 144 V I P E+R+ L +RL Sbjct: 53 VACIPLNPEH---VESRETLMQKYQRLTAI 79 >gi|300856746|ref|YP_003781730.1| dihydropyrimidine dehydrogenase [Clostridium ljungdahlii DSM 13528] gi|300436861|gb|ADK16628.1| dihydropyrimidine dehydrogenase [Clostridium ljungdahlii DSM 13528] Length = 408 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 17/111 (15%), Positives = 32/111 (28%), Gaps = 7/111 (6%) Query: 13 LKEFVGAFFLCLR-YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71 +K+ + + F+ + K + + + C+ C C Sbjct: 291 IKDLISGLSYYMEDKKFEKVKDLVGLAVKNVVNADELERDYIIYPEFRDHNCVGCGRCYI 350 Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C G + + + + KC C LC CP I+ G Sbjct: 351 SCFDG------GHQAIKWNYESRKPQLIEDKCEGCHLCANICPTGDILSGK 395 >gi|260888301|ref|ZP_05899564.1| conserved domain protein [Selenomonas sputigena ATCC 35185] gi|330838372|ref|YP_004412952.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Selenomonas sputigena ATCC 35185] gi|260861837|gb|EEX76337.1| conserved domain protein [Selenomonas sputigena ATCC 35185] gi|329746136|gb|AEB99492.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Selenomonas sputigena ATCC 35185] Length = 56 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 24/58 (41%), Positives = 28/58 (48%), Gaps = 11/58 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI+C C CP +AI+ +Y ID KCI CG C E CPV AI Sbjct: 7 EECISCGSCAGTCPVEAISEGE-----------SQYVIDEEKCIECGACAEGCPVSAI 53 >gi|255718765|ref|XP_002555663.1| KLTH0G14520p [Lachancea thermotolerans] gi|238937047|emb|CAR25226.1| KLTH0G14520p [Lachancea thermotolerans] Length = 608 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +++C K C C +++G C + T + I CI CG+C + CP DAI Sbjct: 12 NDDKCKP-KKCRQECKRSCPVVKTGKLCIEVTPTSKIAFISENLCIGCGICVKKCPFDAI 70 Query: 119 VEGP 122 Sbjct: 71 QIIN 74 >gi|221201244|ref|ZP_03574284.1| formate dehydrogenase, NAD-dependent, alpha subunit [Burkholderia multivorans CGD2M] gi|221206302|ref|ZP_03579315.1| formate dehydrogenase, NAD-dependent, alpha subunit [Burkholderia multivorans CGD2] gi|221173611|gb|EEE06045.1| formate dehydrogenase, NAD-dependent, alpha subunit [Burkholderia multivorans CGD2] gi|221179094|gb|EEE11501.1| formate dehydrogenase, NAD-dependent, alpha subunit [Burkholderia multivorans CGD2M] Length = 983 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 23/78 (29%), Gaps = 3/78 (3%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIK 102 R + + + +CI C C C T + + Sbjct: 178 HDRKDESNPYFTYDPSKCIVCNRCVRACEETQGTFALTIAARGFESRVAAGESEPFMESE 237 Query: 103 CIYCGLCQEACPVDAIVE 120 C+ CG C ACP + E Sbjct: 238 CVSCGACVAACPTATLQE 255 >gi|221213583|ref|ZP_03586557.1| formate dehydrogenase, NAD-dependent, alpha subunit [Burkholderia multivorans CGD1] gi|221166372|gb|EED98844.1| formate dehydrogenase, NAD-dependent, alpha subunit [Burkholderia multivorans CGD1] Length = 983 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 23/78 (29%), Gaps = 3/78 (3%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIK 102 R + + + +CI C C C T + + Sbjct: 178 HDRKDESNPYFTYDPSKCIVCNRCVRACEETQGTFALTIAARGFESRVAAGESEPFMESE 237 Query: 103 CIYCGLCQEACPVDAIVE 120 C+ CG C ACP + E Sbjct: 238 CVSCGACVAACPTATLQE 255 >gi|160943092|ref|ZP_02090329.1| hypothetical protein FAEPRAM212_00571 [Faecalibacterium prausnitzii M21/2] gi|158445561|gb|EDP22564.1| hypothetical protein FAEPRAM212_00571 [Faecalibacterium prausnitzii M21/2] Length = 294 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 15/67 (22%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L + +C++C C C + + +CI CG+C +A Sbjct: 227 LFQMRVDTHKCVSCGACAKACKMD---------------VDITKTPNHAECIRCGMCMKA 271 Query: 113 CPVDAIV 119 CP DAI Sbjct: 272 CPTDAIQ 278 >gi|118444986|ref|YP_878968.1| pyruvate formate-lyase [Clostridium novyi NT] gi|118135442|gb|ABK62486.1| pyruvate formate-lyase [Clostridium novyi NT] Length = 299 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 23/60 (38%), Gaps = 12/60 (20%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 CI C C C AI + + R ID KCI CG C E C +A+ Sbjct: 52 RNCIQCGNCARACKVGAIDVIN------------RNGIDKNKCINCGKCVETCYANALNM 99 >gi|221066934|ref|ZP_03543039.1| electron transport complex, RnfABCDGE type, B subunit [Comamonas testosteroni KF-1] gi|220711957|gb|EED67325.1| electron transport complex, RnfABCDGE type, B subunit [Comamonas testosteroni KF-1] Length = 224 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 21/60 (35%), Gaps = 10/60 (16%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C LC CP AI + + + C C LC CPVD I Sbjct: 94 CIGCTLCIKACPTDAILGANK----------RMHTVIADHCTGCELCIPVCPVDCIELIN 143 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C LC +ACP DAI Sbjct: 89 IDEAWCIGCTLCIKACPTDAI 109 >gi|157164373|ref|YP_001466147.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Campylobacter concisus 13826] gi|112800370|gb|EAT97714.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Campylobacter concisus 13826] Length = 1192 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 28/133 (21%), Positives = 46/133 (34%), Gaps = 30/133 (22%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ--------------AITIESG 83 FE G+T+ RG + + CI C C +CP A Sbjct: 667 FEAGTTAYEKRGVGVMVPKWIEQN-CIQCNQCAFVCPHAVIRPFLIDENELSAAPQGVKE 725 Query: 84 PRCHDGTR--RTVRYDID--MIKCIYCGLCQEACP--VDAIVEGP--------NFEFATE 129 + + ++Y I + C C LC + CP ++V P E A Sbjct: 726 HNLEAKGKELKGLKYKIQVSPLDCTGCELCAQNCPSKEKSLVMVPLEEELGKNEQENADY 785 Query: 130 TRQELYYDKERLL 142 +++ Y K+ L+ Sbjct: 786 LFKKVAY-KDDLM 797 >gi|58581545|ref|YP_200561.1| ferredoxin [Xanthomonas oryzae pv. oryzae KACC10331] gi|58426139|gb|AAW75176.1| ferredoxin II [Xanthomonas oryzae pv. oryzae KACC10331] Length = 156 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 27/85 (31%), Positives = 31/85 (36%), Gaps = 11/85 (12%) Query: 39 EKGSTSPRFRGEHAL-RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 R RG H L + E CI C C CP AI G + + Sbjct: 80 VPARPYDRSRGAHKLPQVAWIVEADCIGCTKCIHACPVDAIV---------GGAKHMHTV 130 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 I + C C LC ACPVD I P Sbjct: 131 IAPL-CTGCELCLPACPVDCIELHP 154 >gi|121612415|ref|YP_999800.1| iron-sulfur cluster binding protein [Campylobacter jejuni subsp. jejuni 81-176] gi|167004775|ref|ZP_02270533.1| iron-sulfur cluster binding protein [Campylobacter jejuni subsp. jejuni 81-176] gi|205356453|ref|ZP_03223217.1| putative iron sulfur protein [Campylobacter jejuni subsp. jejuni CG8421] gi|87248973|gb|EAQ71935.1| iron-sulfur cluster binding protein [Campylobacter jejuni subsp. jejuni 81-176] gi|205345640|gb|EDZ32279.1| putative iron sulfur protein [Campylobacter jejuni subsp. jejuni CG8421] Length = 479 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 22/89 (24%), Gaps = 10/89 (11%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-----QAITIESGPRCHDGTRR 92 R + RCI C C CP + P Sbjct: 287 EVHVILFDHNRSKMLAHEDYYEALRCIRCGACMNFCPVYDQIGGHAYQTTYPGPIGEVIS 346 Query: 93 TVRYDIDM-----IKCIYCGLCQEACPVD 116 + ID C CG C E CPV Sbjct: 347 PNIFGIDHTGDILNFCSLCGRCSEVCPVQ 375 >gi|325959022|ref|YP_004290488.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanobacterium sp. AL-21] gi|325330454|gb|ADZ09516.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanobacterium sp. AL-21] Length = 460 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 26/88 (29%), Gaps = 6/88 (6%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P+ + + C C C C +I + S Sbjct: 71 CPYNAINMKTTLSEPIRENVPNINTKLCRQCGACVKACKTGSIQLISSGNEE------AH 124 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +I+ C+ CG C CP +AI G Sbjct: 125 SEINEDTCVRCGYCARVCPTEAIKYGEI 152 Score = 41.2 bits (95), Expect = 0.042, Method: Composition-based stats. Identities = 22/71 (30%), Positives = 29/71 (40%), Gaps = 11/71 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C+AC +C CP A+ +E +D KCI CG C CPV+AI Sbjct: 397 DVEACMACGICVRKCPTNALKLEKDEVI-----------VDTEKCILCGECDIICPVNAI 445 Query: 119 VEGPNFEFATE 129 A+ Sbjct: 446 KLKTESNTAST 456 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 11/64 (17%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C + CP + I +E +C++CG C E C +AI Sbjct: 319 DNCIGCGACMSECPVKCIELE-----------MPSPVHIDDRCVHCGKCIETCQFNAIEL 367 Query: 121 GPNF 124 + Sbjct: 368 AEEY 371 Score = 37.0 bits (84), Expect = 0.79, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 33/102 (32%), Gaps = 14/102 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ CI C C +CP+ + + + I+ C C C CP AI Sbjct: 166 NQKDCIGCMTCTKVCPS--------RGAINVGKVSKLPFINPSYCARCEECMNVCPSAAI 217 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDS 160 +++ R + K + + + D+ Sbjct: 218 K------YSSRKRAYKNFSKIKTMEIVSELLENEAGKLSKDA 253 Score = 37.0 bits (84), Expect = 0.80, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 13/69 (18%) Query: 54 RRYPNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 Y +C AC K C CP AI + KC+ C LC+E Sbjct: 21 IDYNIDSSKCEACEDKPCLMSCPVDAIWKTEDGKIEI-----------DDKCVGCVLCRE 69 Query: 112 ACPVDAIVE 120 ACP +AI Sbjct: 70 ACPYNAINM 78 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++C+ C LC CP AI +++ R +I+ C CG C +AC +I Sbjct: 59 DKCVGCVLCREACPYNAINMKTTLSEPI---RENVPNINTKLCRQCGACVKACKTGSIQL 115 >gi|310658701|ref|YP_003936422.1| electron transport complex, rnfABCdge type subunit B [Clostridium sticklandii DSM 519] gi|308825479|emb|CBH21517.1| Electron transport complex, RnfABCDGE type, B subunit precursor [Clostridium sticklandii] Length = 325 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 26/66 (39%), Gaps = 10/66 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + C+ CE +CP AI + H +D KC+ CG C EACP Sbjct: 135 KSCSYGCLGFGTCENVCPFDAIHVYDDGIAH----------VDEEKCVGCGKCIEACPKA 184 Query: 117 AIVEGP 122 I P Sbjct: 185 VIHWIP 190 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 11/56 (19%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C++C CP QAIT E+ ID KC C +C E CP AI Sbjct: 216 CIGCQICVKSCPFQAITFENNLA-----------KIDYSKCTQCMVCVEKCPTKAI 260 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 30/82 (36%), Gaps = 10/82 (12%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 EK T + E+ CI C +C CP AI E + + Sbjct: 253 EKCPTKAISGDLSKRKTARVIEDLCIGCTICAKNCPTNAIEGELK----------AIHKV 302 Query: 99 DMIKCIYCGLCQEACPVDAIVE 120 D KCI C +C + CP AI Sbjct: 303 DPDKCIGCKVCYQKCPKKAIEM 324 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 29/80 (36%), Gaps = 5/80 (6%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQE 111 EE+C+ C C CP I + + + + + CI C +C + Sbjct: 165 HVDEEKCVGCGKCIEACPKAVIHWIPYGQEVSIDCNSKEKGKDVKEKCSVGCIGCQICVK 224 Query: 112 ACPVDAIVEGPNFEFATETR 131 +CP AI N ++ Sbjct: 225 SCPFQAITFENNLAKIDYSK 244 Score = 41.2 bits (95), Expect = 0.043, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 8/60 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +C C +C CP +AI+ + R + CI C +C + CP +AI Sbjct: 241 DYSKCTQCMVCVEKCPTKAISGDLSKR--------KTARVIEDLCIGCTICAKNCPTNAI 292 >gi|303242615|ref|ZP_07329090.1| protein of unknown function DUF362 [Acetivibrio cellulolyticus CD2] gi|302589823|gb|EFL59596.1| protein of unknown function DUF362 [Acetivibrio cellulolyticus CD2] Length = 395 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 11/64 (17%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 +++CI C C CP + + + + KCI C CQE CP AI Sbjct: 320 QDKCIGCGDCMRSCP-----------PKVIQMKNKKPEAKLSKCIRCFCCQEMCPAKAIE 368 Query: 120 EGPN 123 N Sbjct: 369 IKRN 372 >gi|296132235|ref|YP_003639482.1| Glutamate synthase (NADPH) [Thermincola sp. JR] gi|296030813|gb|ADG81581.1| Glutamate synthase (NADPH) [Thermincola potens JR] Length = 500 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 9/60 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++CI C++CE C + + ++ KC+ C C CP A+ Sbjct: 15 DIKKCINCRVCERQCANEVHSYDAEEDLMMAD---------DAKCVNCHRCVLLCPTRAL 65 >gi|197337509|ref|YP_002158626.1| pyruvate formate-lyase activating enzyme [Vibrio fischeri MJ11] gi|197314761|gb|ACH64210.1| pyruvate formate-lyase activating enzyme [Vibrio fischeri MJ11] Length = 303 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 19/60 (31%), Gaps = 8/60 (13%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 P+ C C C CP A+T + P + C C C + CP Sbjct: 51 HNPHTINHCDHCGDCVVHCPTNALTFDDSPSPKVIW--------NEFLCTQCDQCIDVCP 102 >gi|145298168|ref|YP_001141009.1| pyruvate ferrodoxin/flavodoxin oxidoreductase [Aeromonas salmonicida subsp. salmonicida A449] gi|142850940|gb|ABO89261.1| pyruvate ferrodoxin/flavodoxin oxidoreductase [Aeromonas salmonicida subsp. salmonicida A449] Length = 1177 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 24/97 (24%), Gaps = 18/97 (18%) Query: 36 YPFEKGST--SPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------QAIT 79 P + + A + C C C A CP A T Sbjct: 661 SPDGTWPVGTTRWEKRNIAKEVPIWQADLCTRCNYCVAACPHSAIRAKVVDKASLTDAPT 720 Query: 80 IESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACP 114 R +Y + C C LC E CP Sbjct: 721 TLDALDVKARDMRGQQYVLQVAPEDCTGCNLCVEVCP 757 Score = 33.5 bits (75), Expect = 9.7, Method: Composition-based stats. Identities = 8/20 (40%), Positives = 8/20 (40%) Query: 99 DMIKCIYCGLCQEACPVDAI 118 C C C ACP AI Sbjct: 686 QADLCTRCNYCVAACPHSAI 705 >gi|158520765|ref|YP_001528635.1| proto-chlorophyllide reductase 57 kD subunit [Desulfococcus oleovorans Hxd3] gi|158509591|gb|ABW66558.1| Proto-chlorophyllide reductase 57 kD subunit [Desulfococcus oleovorans Hxd3] Length = 263 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 9/60 (15%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C C A C A+ ++ R ID C+ CG C +ACP I EG Sbjct: 146 DCTLCGACVAACRDPAVCLDEA---------NTRPVIDPGLCLACGACAKACPTGTITEG 196 >gi|160897304|ref|YP_001562886.1| formate dehydrogenase subunit alpha [Delftia acidovorans SPH-1] gi|160362888|gb|ABX34501.1| formate dehydrogenase, alpha subunit [Delftia acidovorans SPH-1] Length = 978 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 22/75 (29%), Gaps = 3/75 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T SG C+ CG C + Sbjct: 164 YFSYDPSKCIVCNRCVRACEETQGTFALTISGRGFESRVTAGQGGSFMDSDCVSCGACVQ 223 Query: 112 ACPVDAIVEGPNFEF 126 ACP + E E Sbjct: 224 ACPTATLQEKTVTEL 238 >gi|126179326|ref|YP_001047291.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit [Methanoculleus marisnigri JR1] gi|125862120|gb|ABN57309.1| formate dehydrogenase, beta subunit (F420) [Methanoculleus marisnigri JR1] Length = 383 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 22/67 (32%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R + + E C C + + SG + R+ CI CG Sbjct: 286 RETGRCIKCYSCIENCPVCFPVADELKGNSRMVTSGEVPPNPMFHLRRFAHISDSCINCG 345 Query: 108 LCQEACP 114 C+E CP Sbjct: 346 QCEELCP 352 >gi|78042752|ref|YP_358967.1| iron-sulfur cluster-binding protein [Carboxydothermus hydrogenoformans Z-2901] gi|77994867|gb|ABB13766.1| iron-sulfur cluster-binding protein [Carboxydothermus hydrogenoformans Z-2901] Length = 375 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 3/61 (4%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 E+C C C C A+++ G ++ + ++ +CI CG+C C +A+ Sbjct: 291 PEKCSGCGNCVKKCQINALSLIE---TEPGNPKSKKAHVNKNRCIGCGVCVTFCKKEALT 347 Query: 120 E 120 Sbjct: 348 L 348 >gi|73670065|ref|YP_306080.1| CoB--CoM heterodisulfide reductase subunit A [Methanosarcina barkeri str. Fusaro] gi|72397227|gb|AAZ71500.1| CoB--CoM heterodisulfide reductase subunit A [Methanosarcina barkeri str. Fusaro] Length = 792 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 23/101 (22%), Positives = 30/101 (29%), Gaps = 11/101 (10%) Query: 29 KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88 T+ E S H CK C +C A P + Sbjct: 206 HPNITLYTYSEVTDISGSVGKFHVKVTRKPRFILEDKCKGCVDLCSAVCPVEIENPMNYG 265 Query: 89 GTRRTVRYD-----------IDMIKCIYCGLCQEACPVDAI 118 + Y ID C+ CGLC +ACP DA+ Sbjct: 266 VGKTRAIYMPIPQSVPQVVLIDPDHCVGCGLCLQACPADAV 306 Score = 42.8 bits (99), Expect = 0.018, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 12/69 (17%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E+CI C+ C +C I IE+ +D + C CG C ACP Sbjct: 574 HVDPEKCIGCRTCLEVCKFGKIKIENKKAV-----------VDEVSCYGCGDCSAACPAG 622 Query: 117 AIVEGPNFE 125 AI NFE Sbjct: 623 AIQM-RNFE 630 >gi|83590140|ref|YP_430149.1| glutamate synthase (NADPH) GltB2 subunit [Moorella thermoacetica ATCC 39073] gi|83573054|gb|ABC19606.1| glutamate synthase (NADPH) GltB2 subunit [Moorella thermoacetica ATCC 39073] Length = 502 Score = 43.9 bits (102), Expect = 0.006, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 22/65 (33%), Gaps = 9/65 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E +CI C C C A ++ Y ID C+ C C CP A+ Sbjct: 16 DENKCIKCLACVRQCGFDAQKYDAEDD--------RLYTID-ANCVNCQRCVSICPAGAL 66 Query: 119 VEGPN 123 N Sbjct: 67 TIYKN 71 >gi|325662233|ref|ZP_08150848.1| pyruvate:ferredoxin oxidoreductase [Lachnospiraceae bacterium 4_1_37FAA] gi|331086025|ref|ZP_08335108.1| pyruvate:ferredoxin oxidoreductase [Lachnospiraceae bacterium 9_1_43BFAA] gi|325471485|gb|EGC74706.1| pyruvate:ferredoxin oxidoreductase [Lachnospiraceae bacterium 4_1_37FAA] gi|330406948|gb|EGG86453.1| pyruvate:ferredoxin oxidoreductase [Lachnospiraceae bacterium 9_1_43BFAA] Length = 1180 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 17/69 (24%), Gaps = 14/69 (20%) Query: 60 EERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 E CI C C +CP +A + C Sbjct: 690 PENCIQCNRCAYVCPHAVIRPVALTEEELSKAPEGIETIDMIGMPGMKFTMTVSAYDCTG 749 Query: 106 CGLCQEACP 114 CG C CP Sbjct: 750 CGSCANVCP 758 >gi|320537111|ref|ZP_08037084.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Treponema phagedenis F0421] gi|320146036|gb|EFW37679.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Treponema phagedenis F0421] Length = 1184 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 19/73 (26%), Gaps = 16/73 (21%) Query: 58 NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRYDID--MI 101 E CI C C +CP +A + I Sbjct: 691 WDSEVCIQCGQCVMVCPHAVIRMKAYDKKELDKAPKEFKSCAYKGKEFENAAFTIQVSPE 750 Query: 102 KCIYCGLCQEACP 114 C C LC E CP Sbjct: 751 DCTGCALCVEQCP 763 Score = 37.0 bits (84), Expect = 0.91, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 6/32 (18%) Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134 CI CG C CP I ++EL Sbjct: 696 CIQCGQCVMVCPHAVIRMK------AYDKKEL 721 >gi|298675839|ref|YP_003727589.1| RnfABCDGE type electron transport complex subunit B [Methanohalobium evestigatum Z-7303] gi|298288827|gb|ADI74793.1| electron transport complex, RnfABCDGE type, B subunit [Methanohalobium evestigatum Z-7303] Length = 290 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 28/72 (38%), Gaps = 11/72 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI CK+CE CP AI + + +ID KC CG+C E CP I Sbjct: 214 CTTGCIGCKICEKNCPEDAIKVNN-----------FLAEIDQEKCTACGICVEKCPQGTI 262 Query: 119 VEGPNFEFATET 130 E + Sbjct: 263 EMKETGEKTKTS 274 Score = 38.9 bits (89), Expect = 0.26, Method: Composition-based stats. Identities = 22/67 (32%), Positives = 26/67 (38%), Gaps = 10/67 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C CP AITI H I+ C CGLC E+CP D + Sbjct: 139 CSYGCMGRGTCVRACPFGAITIGEDRLPH----------INKNLCTSCGLCIESCPNDIL 188 Query: 119 VEGPNFE 125 V G E Sbjct: 189 VFGKESE 195 Score = 38.5 bits (88), Expect = 0.28, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 5/67 (7%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR-----TVRYDIDMIKCIYCGLCQE 111 + C +C LC CP + R + CI C +C++ Sbjct: 167 HINKNLCTSCGLCIESCPNDILVFGKESEKVHVRCRSHDKPKAVKAVCTTGCIGCKICEK 226 Query: 112 ACPVDAI 118 CP DAI Sbjct: 227 NCPEDAI 233 >gi|296132534|ref|YP_003639781.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola sp. JR] gi|296031112|gb|ADG81880.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermincola potens JR] Length = 219 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 3/70 (4%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY---DIDMIKCIYCGLCQEACPV 115 RC+ C C + + G R+ + + +C CG C + CPV Sbjct: 148 DPSRCVLCGQCVWVDRNKVKVGAIGFIKRGMDRKVSTFGEVKLAESRCTQCGECVKVCPV 207 Query: 116 DAIVEGPNFE 125 A+ E Sbjct: 208 GALTASSEKE 217 >gi|284161553|ref|YP_003400176.1| cobyrinic acid ac-diamide synthase [Archaeoglobus profundus DSM 5631] gi|284011550|gb|ADB57503.1| Cobyrinic acid ac-diamide synthase [Archaeoglobus profundus DSM 5631] Length = 277 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 31/74 (41%), Gaps = 11/74 (14%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 +++ +++C C LC +C AI +E+ Y +D+++C C C Sbjct: 53 FKGMKKARIIQDKCERCGLCMDLCRFDAIYVEND-----------SYKVDIVRCEGCAFC 101 Query: 110 QEACPVDAIVEGPN 123 ACP AI Sbjct: 102 FRACPNKAIEMVSE 115 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 21/64 (32%), Gaps = 4/64 (6%) Query: 64 IACKLCEAICPAQAITIE----SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 CK A C A + + + I KC CGLC + C DAI Sbjct: 23 TLCKGVIADCDVDAPNLHILLKPRILEEIPFKGMKKARIIQDKCERCGLCMDLCRFDAIY 82 Query: 120 EGPN 123 + Sbjct: 83 VEND 86 >gi|268323770|emb|CBH37358.1| probable F420H2-quinone oxidoreductase 39 kD subunit [uncultured archaeon] Length = 353 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 32/98 (32%), Gaps = 15/98 (15%) Query: 20 FFLCLRY---FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 ++ ++ + K + P +K F A+ + C C C ++CP Sbjct: 4 LYVTIKMAAAIGEYKWEVKVPEKKLKDKLYFENLKAVVVDT---KLCSRCLTCVSVCPGG 60 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 E V + KC+ CG C CP Sbjct: 61 LTVSEED---------IVDFPDYETKCLDCGACVRVCP 89 >gi|265751809|ref|ZP_06087602.1| ferredoxin [Bacteroides sp. 3_1_33FAA] gi|263236601|gb|EEZ22071.1| ferredoxin [Bacteroides sp. 3_1_33FAA] Length = 309 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 26/76 (34%), Gaps = 8/76 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------DMIKCIYCGLCQ 110 EE+C AC C CP + I I + CI CG C Sbjct: 172 DEEKCTACGACSKACPRKIIEIRPKGKNSRRVVVMCVNKDKGAVANKACKASCIGCGKCV 231 Query: 111 EACPVDAIVEGPNFEF 126 + CP +AI N + Sbjct: 232 KVCPFEAITLENNLAY 247 Score = 41.2 bits (95), Expect = 0.051, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 9/60 (15%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C C +C AI + ++D KC CG C +ACP I P Sbjct: 145 CLGCGDCVEVCQFDAIHMNPETGLP---------EVDEEKCTACGACSKACPRKIIEIRP 195 Score = 38.9 bits (89), Expect = 0.21, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 26/61 (42%), Gaps = 11/61 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI C C +CP +AIT+E+ ID KC C C+ CP AI Sbjct: 220 CKASCIGCGKCVKVCPFEAITLENNLAY-----------IDPAKCKSCRKCEPECPKGAI 268 Query: 119 V 119 Sbjct: 269 Q 269 Score = 35.5 bits (80), Expect = 2.6, Method: Composition-based stats. Identities = 10/21 (47%), Positives = 11/21 (52%) Query: 103 CIYCGLCQEACPVDAIVEGPN 123 C+ CG C E C DAI P Sbjct: 145 CLGCGDCVEVCQFDAIHMNPE 165 >gi|238022534|ref|ZP_04602960.1| hypothetical protein GCWU000324_02442 [Kingella oralis ATCC 51147] gi|237867148|gb|EEP68190.1| hypothetical protein GCWU000324_02442 [Kingella oralis ATCC 51147] Length = 482 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 19/64 (29%), Gaps = 10/64 (15%) Query: 62 RCIACKLCEAICPA-----QAITIES-----GPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 +CI C C CP A + G + C CG C E Sbjct: 317 QCIRCGACMNHCPVYTRVGGAAYGTTYPGPIGEIISPHLMGLDKTRDLPTACTMCGACVE 376 Query: 112 ACPV 115 CPV Sbjct: 377 VCPV 380 >gi|224369388|ref|YP_002603552.1| 4Fe-4S ferredoxin, iron-sulfur cluster binding protein [Desulfobacterium autotrophicum HRM2] gi|223692105|gb|ACN15388.1| 4Fe-4S ferredoxin, iron-sulfur cluster binding protein [Desulfobacterium autotrophicum HRM2] Length = 519 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 7/50 (14%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 C C +CP A+ H + CI CG CQ+ CPV Sbjct: 436 CGACAEVCPTHAVYTIKENNVH-------HPRLAPDACIGCGACQQVCPV 478 Score = 42.0 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 13/73 (17%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 AL R+ + RC C C+ +C A I G ID +C+ C C Sbjct: 225 RKALFRFSIDKTRCNGCAKCQRVCRAACIHPSLGE-------------IDGSRCVACFDC 271 Query: 110 QEACPVDAIVEGP 122 + CP AI P Sbjct: 272 MDVCPEQAIQYLP 284 Score = 38.2 bits (87), Expect = 0.39, Method: Composition-based stats. Identities = 17/105 (16%), Positives = 26/105 (24%), Gaps = 7/105 (6%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ 76 + + + F+ P S F + C +CP Sbjct: 159 INNLMVAVTETFRPYLLSPSPSHTLSWP-LFMLAYVWLILVTTMAFFHGRLYCNTLCPVG 217 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 A + R+ ID +C C CQ C I Sbjct: 218 AFF------SLFSRKALFRFSIDKTRCNGCAKCQRVCRAACIHPS 256 Score = 37.8 bits (86), Expect = 0.47, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 21/62 (33%), Gaps = 4/62 (6%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACPVDAIVEG 121 C C +CP+ AI + V ++ + CG C E CP A+ Sbjct: 392 CNACTQVCPSGAIVPLALGVKQRTRIGHVVFEKNQCLVYTHKRDCGACAEVCPTHAVYTI 451 Query: 122 PN 123 Sbjct: 452 KE 453 >gi|206889393|ref|YP_002247876.1| indolepyruvate oxidoreductase subunit IorA [Thermodesulfovibrio yellowstonii DSM 11347] gi|206741331|gb|ACI20388.1| indolepyruvate oxidoreductase subunit IorA [Thermodesulfovibrio yellowstonii DSM 11347] Length = 596 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 9/58 (15%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C CKLC AI + V+ +ID C+ CG C CP AI Sbjct: 547 CKGCKLCLTEFECPAIVFKEED---------VKAEIDHTICVGCGCCVHICPTKAIRL 595 >gi|157363819|ref|YP_001470586.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Thermotoga lettingae TMO] gi|157314423|gb|ABV33522.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermotoga lettingae TMO] Length = 532 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 11/65 (16%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + + + C+ C C CP ++I+ G I CI CG+C E Sbjct: 1 MNAIVSNDASCMYCYKCLRNCPVKSISFNHGKA-----------KIIDEDCIQCGICIEV 49 Query: 113 CPVDA 117 CP A Sbjct: 50 CPQKA 54 >gi|220928814|ref|YP_002505723.1| indolepyruvate ferredoxin oxidoreductase subunit alpha [Clostridium cellulolyticum H10] gi|219999142|gb|ACL75743.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Clostridium cellulolyticum H10] Length = 598 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 21/57 (36%), Gaps = 11/57 (19%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C CK C AI++ G I+ C CGLC CP DAI Sbjct: 547 NCKDCKKCITEIGCPAISVIEGKV-----------RIEPSLCYGCGLCTNVCPFDAI 592 >gi|83311714|ref|YP_421978.1| electron transport complex protein rnfC [Magnetospirillum magneticum AMB-1] gi|82946555|dbj|BAE51419.1| Electron transport complex protein rnfC [Magnetospirillum magneticum AMB-1] Length = 498 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 25/72 (34%), Gaps = 2/72 (2%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + CI C C CP + +E + + I + C+ CG C CP Sbjct: 363 EHAPSPCIRCGSCVTYCPCGLVPVEMASYI-RNDKLDLAAKIGVQDCVSCGSCSYICPSH 421 Query: 117 AIVEGPNFEFAT 128 I F +A Sbjct: 422 -IPLVHFFNYAK 432 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 14/37 (37%), Gaps = 4/37 (10%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 + CI CG C CP + E A+ R + Sbjct: 363 EHAPSPCIRCGSCVTYCPCGLVPV----EMASYIRND 395 >gi|119988|sp|P00198|FER_CLOAC RecName: Full=Ferredoxin gi|157831050|pdb|1FDN|A Chain A, Refined Crystal Structure Of The 2[4fe-4s] Ferredoxin From Clostridium Acidurici At 1.84 Angstroms Resolution gi|157834957|pdb|2FDN|A Chain A, 2[4fe-4s] Ferredoxin From Clostridium Acidi-Urici Length = 55 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 24/58 (41%), Positives = 26/58 (44%), Gaps = 11/58 (18%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 E CI+C CE CP AI+ RY ID CI CG C CPVDA Sbjct: 5 NEACISCGACEPECPVNAISSGDD-----------RYVIDADTCIDCGACAGVCPVDA 51 >gi|126464669|ref|YP_001045782.1| electron transport complex, RnfABCDGE type, B subunit [Rhodobacter sphaeroides ATCC 17029] gi|226735424|sp|A3PRP4|RNFB_RHOS1 RecName: Full=Electron transport complex protein rnfB; AltName: Full=Nitrogen fixation protein rnfB gi|126106480|gb|ABN79010.1| electron transport complex, RnfABCDGE type, B subunit [Rhodobacter sphaeroides ATCC 17029] Length = 188 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 10/58 (17%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C C CP AI + + + CI C C EACP +AI Sbjct: 111 DHCTGCMRCFKRCPTDAIIGAN----------RQIHTVVTDACIGCNACIEACPTEAI 158 >gi|298674635|ref|YP_003726385.1| nitrite and sulphite reductase [Methanohalobium evestigatum Z-7303] gi|298287623|gb|ADI73589.1| nitrite and sulphite reductase 4Fe-4S region [Methanohalobium evestigatum Z-7303] Length = 623 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 28/74 (37%), Gaps = 11/74 (14%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 RYP + C C C +C +AI++ R + CI CG C +AC Sbjct: 488 VRYPKVNDNCNGCGRCADVCKLEAISV-----------RGTTSYTNYNVCIGCGKCIKAC 536 Query: 114 PVDAIVEGPNFEFA 127 P DA A Sbjct: 537 PNDARDIEKEGYMA 550 Score = 35.5 bits (80), Expect = 2.9, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 18/56 (32%) Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 + P HD VRY C CG C + C ++AI + Sbjct: 469 SGCPNKCVRPHIHDIGFYGVRYPKVNDNCNGCGRCADVCKLEAISVRGTTSYTNYN 524 >gi|295094175|emb|CBK83266.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Coprococcus sp. ART55/1] Length = 56 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 11/60 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C CP AI+ G + ID +CI CG C +CPV I E Sbjct: 7 DSCIGCGSCAGACPVGAISDNGG-----------VFVIDGSQCISCGACAGSCPVGTIAE 55 >gi|291548594|emb|CBL24856.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Ruminococcus torques L2-14] Length = 56 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 29/66 (43%), Gaps = 11/66 (16%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C++C CE CP AI+ G Y+ID C+ CG C+ ACP Sbjct: 1 MAHVISDECVSCGTCEGECPVGAISEGDGK-----------YEIDADACVDCGACEAACP 49 Query: 115 VDAIVE 120 AI E Sbjct: 50 TGAISE 55 >gi|258591530|emb|CBE67831.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase precursor [NC10 bacterium 'Dutch sediment'] Length = 665 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 25/94 (26%), Gaps = 21/94 (22%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---------- 97 R CI C C +CP + + + T + Sbjct: 560 RCVRCGIHTIFDGTTCILCGGCVDVCPEYCLRMVPIDQLAGDDAVTSLVESLTGSPQSAT 619 Query: 98 -----------IDMIKCIYCGLCQEACPVDAIVE 120 +D +CI C LC CP AI Sbjct: 620 PVAASAATAMLMDATRCIRCALCAMRCPTGAISM 653 Score = 42.4 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 11/53 (20%), Positives = 19/53 (35%) Query: 78 ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 ++ + R + D CI CG C + CP + P + A + Sbjct: 550 PDTQAQAQAQRCVRCGIHTIFDGTTCILCGGCVDVCPEYCLRMVPIDQLAGDD 602 >gi|227498875|ref|ZP_03929015.1| electron transport complex protein [Acidaminococcus sp. D21] gi|226904327|gb|EEH90245.1| electron transport complex protein [Acidaminococcus sp. D21] Length = 447 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 20/114 (17%), Positives = 31/114 (27%), Gaps = 11/114 (9%) Query: 16 FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 G + +++YP K S + + C+ C C CP Sbjct: 323 ISGGMMMGFS-----TPSLDYPIAKWSGAVLIFNSESPFAQYVEPSPCVHCARCVDACPM 377 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP-----VDAIVEGPNF 124 + + + C+ CG C CP V I G F Sbjct: 378 K-LEPTEIVQAVKRQNWEEAERFSCHACVECGSCAFVCPAHIPLVQYIRMGKQF 430 >gi|170698431|ref|ZP_02889504.1| formate dehydrogenase, alpha subunit [Burkholderia ambifaria IOP40-10] gi|170136684|gb|EDT04939.1| formate dehydrogenase, alpha subunit [Burkholderia ambifaria IOP40-10] Length = 983 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 23/76 (30%), Gaps = 3/76 (3%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCI 104 R + + + +CI C C C T + +C+ Sbjct: 180 RKDESNPYFTYDPSKCIVCNRCVRACEETQGTFALTIAARGFESRVAAGESESFMESECV 239 Query: 105 YCGLCQEACPVDAIVE 120 CG C ACP + E Sbjct: 240 SCGACVAACPTATLQE 255 >gi|162446934|ref|YP_001620066.1| NADH oxidoreductase complex RnfABCDGE type, C subunit [Acholeplasma laidlawii PG-8A] gi|161985041|gb|ABX80690.1| NADH oxidoreductase complex RnfABCDGE type, C subunit [Acholeplasma laidlawii PG-8A] Length = 432 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 23/64 (35%), Gaps = 2/64 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ CI C C CP Q I + + + KCI CGLC CP I Sbjct: 360 NEDPCIHCASCVYSCPVQ-IQPVQIMNAVKANDKDFLKALSVNKCIECGLCSFVCP-SKI 417 Query: 119 VEGP 122 Sbjct: 418 HLTD 421 >gi|160884258|ref|ZP_02065261.1| hypothetical protein BACOVA_02236 [Bacteroides ovatus ATCC 8483] gi|237719500|ref|ZP_04549981.1| ferredoxin [Bacteroides sp. 2_2_4] gi|156109997|gb|EDO11742.1| hypothetical protein BACOVA_02236 [Bacteroides ovatus ATCC 8483] gi|229451360|gb|EEO57151.1| ferredoxin [Bacteroides sp. 2_2_4] Length = 317 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 9/65 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C C A C AI + ++D KC CG C +ACP I Sbjct: 138 CSYGCLGCGDCVAACQFDAIHMNPETGLP---------EVDEAKCTACGACVKACPKAII 188 Query: 119 VEGPN 123 P Sbjct: 189 EIRPQ 193 Score = 40.9 bits (94), Expect = 0.059, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 8/76 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCH--------DGTRRTVRYDIDMIKCIYCGLCQ 110 E +C AC C CP I I + + + V + CI CG C Sbjct: 169 DEAKCTACGACVKACPKAIIEIRPQGKKSRRVYISCVNKDKGAVARKACTVSCIGCGKCV 228 Query: 111 EACPVDAIVEGPNFEF 126 + CP +AI N + Sbjct: 229 KTCPFEAITLENNLAY 244 Score = 40.1 bits (92), Expect = 0.091, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 11/62 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C C CP +AIT+E+ ID KC C C E CP + I Sbjct: 217 CTVSCIGCGKCVKTCPFEAITLENNLAY-----------IDPHKCKSCRKCVEVCPQNTI 265 Query: 119 VE 120 +E Sbjct: 266 IE 267 >gi|153814133|ref|ZP_01966801.1| hypothetical protein RUMTOR_00342 [Ruminococcus torques ATCC 27756] gi|317499938|ref|ZP_07958174.1| hypothetical protein HMPREF1026_00116 [Lachnospiraceae bacterium 8_1_57FAA] gi|331087839|ref|ZP_08336764.1| hypothetical protein HMPREF1025_00347 [Lachnospiraceae bacterium 3_1_46FAA] gi|145848529|gb|EDK25447.1| hypothetical protein RUMTOR_00342 [Ruminococcus torques ATCC 27756] gi|316898655|gb|EFV20690.1| hypothetical protein HMPREF1026_00116 [Lachnospiraceae bacterium 8_1_57FAA] gi|330409534|gb|EGG88975.1| hypothetical protein HMPREF1025_00347 [Lachnospiraceae bacterium 3_1_46FAA] Length = 569 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 11/64 (17%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 +C C C C +AI+++ I + CI CG C E CP +A Sbjct: 10 KCRHCYKCVRNCAVKAISVKDEQA-----------RIMVDHCINCGRCLEVCPQNAKTFA 58 Query: 122 PNFE 125 + E Sbjct: 59 SDLE 62 >gi|134045390|ref|YP_001096876.1| formylmethanofuran dehydrogenase subunit G [Methanococcus maripaludis C5] gi|132663015|gb|ABO34661.1| formylmethanofuran dehydrogenase, subunit G [Methanococcus maripaludis C5] Length = 80 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 26/67 (38%), Gaps = 8/67 (11%) Query: 60 EERCIACKLCEAICPAQAITIE--------SGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 E+C C C CP A + S + V ++ C CG C E Sbjct: 8 PEKCHGCGNCVVACPVNAQDPDVYGGKGPSSDEKLVMRVENGVVSIVNGDLCGGCGACIE 67 Query: 112 ACPVDAI 118 ACPVDAI Sbjct: 68 ACPVDAI 74 Score = 33.9 bits (76), Expect = 7.4, Method: Composition-based stats. Identities = 10/25 (40%), Positives = 14/25 (56%) Query: 93 TVRYDIDMIKCIYCGLCQEACPVDA 117 + ++ KC CG C ACPV+A Sbjct: 1 MYKLEVYPEKCHGCGNCVVACPVNA 25 >gi|39995616|ref|NP_951567.1| Fe(III) reductase subunit alpha [Geobacter sulfurreducens PCA] gi|39982379|gb|AAR33840.1| Fe(III) reductase, alpha subunit [Geobacter sulfurreducens PCA] gi|298504638|gb|ADI83361.1| Fe(III) reductase, alpha subunit [Geobacter sulfurreducens KN400] Length = 844 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 22/66 (33%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + RCI C+ C + D + + C +CG C ACP Sbjct: 140 ESDPNRCILCEKCVKVDHEIVGCNAIRVVNRGEATIIDTVDGNPLNCEFCGNCVAACPTG 199 Query: 117 AIVEGP 122 ++ P Sbjct: 200 TLISKP 205 >gi|86151216|ref|ZP_01069431.1| iron-sulfur cluster binding protein [Campylobacter jejuni subsp. jejuni 260.94] gi|315123679|ref|YP_004065683.1| iron-sulfur cluster binding protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|85841563|gb|EAQ58810.1| iron-sulfur cluster binding protein [Campylobacter jejuni subsp. jejuni 260.94] gi|315017401|gb|ADT65494.1| iron-sulfur cluster binding protein [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 479 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 22/89 (24%), Gaps = 10/89 (11%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-----QAITIESGPRCHDGTRR 92 R + RCI C C CP + P Sbjct: 287 EVHVILFDHNRSKMLAHEDYYEALRCIRCGACMNFCPVYDQIGGHAYQTTYPGPIGEVIS 346 Query: 93 TVRYDIDM-----IKCIYCGLCQEACPVD 116 + ID C CG C E CPV Sbjct: 347 PNIFGIDHTGDILNFCSLCGRCSEVCPVQ 375 >gi|311281329|ref|YP_003943560.1| glycyl-radical enzyme activating protein family [Enterobacter cloacae SCF1] gi|308750524|gb|ADO50276.1| glycyl-radical enzyme activating protein family [Enterobacter cloacae SCF1] Length = 301 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 12/73 (16%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 +C+ C+ C A+CP G ++ID C CG C E CP A+ Sbjct: 54 SKCVGCQRCAAVCPQGCHRFAQGK-----------HEIDFDACRACGRCVEVCPEQALKI 102 Query: 121 -GPNFEFATETRQ 132 G ++E R+ Sbjct: 103 YGRSYEVDELIRE 115 >gi|238919824|ref|YP_002933339.1| glutamate synthase family, small subunit, [Edwardsiella ictaluri 93-146] gi|238869393|gb|ACR69104.1| glutamate synthase family, small subunit, putative [Edwardsiella ictaluri 93-146] Length = 678 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 23/73 (31%), Gaps = 13/73 (17%) Query: 48 RGEHALRRYPNGEERCIACK--LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 R R C C+ C +CP AI + + KCI Sbjct: 41 RIHVIHRGDRRTALLCRHCEDAPCANVCPNGAIE-----------KYNDSIQVRQEKCIG 89 Query: 106 CGLCQEACPVDAI 118 C C ACP AI Sbjct: 90 CKTCVVACPFGAI 102 Score = 37.0 bits (84), Expect = 0.91, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 8/70 (11%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG------LCQEAC 113 +E+CI CK C CP AI + + +VR + KC C C AC Sbjct: 84 QEKCIGCKTCVVACPFGAIEVITQSDPRSNHPDSVRANAH--KCDLCDGVADSPSCVAAC 141 Query: 114 PVDAIVEGPN 123 P +A+ Sbjct: 142 PSNALQLISE 151 >gi|239623493|ref|ZP_04666524.1| electron transport complex [Clostridiales bacterium 1_7_47_FAA] gi|239521524|gb|EEQ61390.1| electron transport complex [Clostridiales bacterium 1_7_47FAA] Length = 262 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 22/61 (36%), Positives = 23/61 (37%), Gaps = 11/61 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C LC C AI +E ID KC CG C E CPV I Sbjct: 213 CESGCIGCTLCTKQCEFDAIHMEDNLAV-----------IDYEKCTNCGKCAEKCPVKVI 261 Query: 119 V 119 Sbjct: 262 Q 262 Score = 38.5 bits (88), Expect = 0.29, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 28/78 (35%), Gaps = 5/78 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCH-----DGTRRTVRYDIDMIKCIYCGLCQEAC 113 +E+C+AC C + CP I + H + + CI C LC + C Sbjct: 168 DKEKCVACGKCVSSCPNHLIELVPYKAGHLVQCSSHAKGKDVKSVCESGCIGCTLCTKQC 227 Query: 114 PVDAIVEGPNFEFATETR 131 DAI N + Sbjct: 228 EFDAIHMEDNLAVIDYEK 245 >gi|212223165|ref|YP_002306401.1| indolepyruvate: ferredoxin oxidoreductase, alpha subunit [Thermococcus onnurineus NA1] gi|212008122|gb|ACJ15504.1| indolepyruvate: ferredoxin oxidoreductase, alpha subunit [Thermococcus onnurineus NA1] Length = 638 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 9/60 (15%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E+C CK C + A+ + + ID + C CG+C + CP DAI Sbjct: 581 EKCTGCKACILLTGCPALVYDPDTN---------KVKIDELLCTGCGVCNQLCPFDAIKF 631 >gi|153952957|ref|YP_001393722.1| hypothetical protein CKL_0320 [Clostridium kluyveri DSM 555] gi|219853615|ref|YP_002470737.1| hypothetical protein CKR_0272 [Clostridium kluyveri NBRC 12016] gi|146345838|gb|EDK32374.1| Conserved hypothetical protein containing a ferredoxin domain [Clostridium kluyveri DSM 555] gi|219567339|dbj|BAH05323.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 253 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 23/89 (25%), Positives = 31/89 (34%), Gaps = 11/89 (12%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93 P+ S R+ + N E+ CI C LCE CP +AI + +G Sbjct: 161 RRAPYVVRIISDRYYENMRKTNHFNVEDSCIGCGLCEKKCPVEAIKMRNGKPVW------ 214 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 +C C C CP AI Sbjct: 215 -----ITEQCAMCLGCLHRCPKFAIQYDD 238 >gi|120603320|ref|YP_967720.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfovibrio vulgaris DP4] gi|120563549|gb|ABM29293.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Desulfovibrio vulgaris DP4] Length = 170 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 20/65 (30%), Gaps = 13/65 (20%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C C CP A+ ++ CI+CG C CP + I Sbjct: 82 DRSLCIRCGRCAEACPVDAVHMDGETGLPYV-------------CIHCGRCVAFCPHECI 128 Query: 119 VEGPN 123 Sbjct: 129 ELVDQ 133 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 5/58 (8%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 C C+ AQA + + G + R CI CG C EACPVDA+ Sbjct: 54 CLACDPAPCAQACPTGAYAQRKGGGVKVDR-----SLCIRCGRCAEACPVDAVHMDGE 106 >gi|15602250|ref|NP_245322.1| electron transport complex protein RnfC [Pasteurella multocida subsp. multocida str. Pm70] gi|17368785|sp|Q9CNP2|RNFC_PASMU RecName: Full=Electron transport complex protein rnfC gi|12720632|gb|AAK02469.1| unknown [Pasteurella multocida subsp. multocida str. Pm70] Length = 835 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 23/103 (22%), Positives = 33/103 (32%), Gaps = 18/103 (17%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C CP + + + + CI CGLC CP I Sbjct: 375 QSCIRCSACSDACPVS-LMPQQLYWFARSEDHEKSEEYALKDCIECGLCAYVCPSH-IPL 432 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 F RQE K ++ WE + ++ R Sbjct: 433 IQYF------RQE----KAKI------WEIQQKAKQAEEAKQR 459 >gi|154247407|ref|YP_001418365.1| formate dehydrogenase, alpha subunit [Xanthobacter autotrophicus Py2] gi|154161492|gb|ABS68708.1| formate dehydrogenase, alpha subunit [Xanthobacter autotrophicus Py2] Length = 946 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 3/77 (3%) Query: 55 RYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDM--IKCIYCGLCQE 111 + + +CI C C C Q + G+R + D +C+ CG C + Sbjct: 159 YFTYEQSKCIVCNRCVRACEEVQGTFALTISGRGFGSRVSPGMDEPFLTSECVSCGACVQ 218 Query: 112 ACPVDAIVEGPNFEFAT 128 ACP + E ++ T Sbjct: 219 ACPTATLNEKAMYDIGT 235 >gi|116750928|ref|YP_847615.1| formate dehydrogenase subunit alpha [Syntrophobacter fumaroxidans MPOB] gi|116699992|gb|ABK19180.1| formate dehydrogenase, alpha subunit [Syntrophobacter fumaroxidans MPOB] Length = 905 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 3/71 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQE 111 +C+ C C C + ++ + C+ CG C + Sbjct: 147 MIVRDHNKCVLCGRCVRACLQVQVNGAIDIAARGSDSYITTFNNTSLAESSCVSCGQCVQ 206 Query: 112 ACPVDAIVEGP 122 ACPV A+ E Sbjct: 207 ACPVGALTEKK 217 >gi|95928880|ref|ZP_01311626.1| protein of unknown function DUF169 [Desulfuromonas acetoxidans DSM 684] gi|95135225|gb|EAT16878.1| protein of unknown function DUF169 [Desulfuromonas acetoxidans DSM 684] Length = 326 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 7/72 (9%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E+C C +C CP + + + ++ C C C CP +AI Sbjct: 9 EQCTGCGMCVNFCPVEVF------QLETSGEKNTVKVVNPSACWACDTCVGQCPTNAIRI 62 Query: 121 GPNFEFATETRQ 132 + E A R+ Sbjct: 63 IESAEEAA-DRE 73 Score = 33.9 bits (76), Expect = 7.9, Method: Composition-based stats. Identities = 8/24 (33%), Positives = 11/24 (45%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVE 120 I +C CG+C CPV+ Sbjct: 5 QIATEQCTGCGMCVNFCPVEVFQL 28 >gi|332971139|gb|EGK10104.1| iron-sulfur cluster binding protein [Kingella kingae ATCC 23330] Length = 483 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 23/82 (28%), Gaps = 14/82 (17%) Query: 62 RCIACKLCEAICPA-----QAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQE 111 +CI C C CP A + P C CG C E Sbjct: 317 QCIRCGACMNHCPVYTRIGGAAYGTTYPGPIGEILSPHLLGLETTRDLPTACTMCGACVE 376 Query: 112 ACPVDAIVEGPNFEFATETRQE 133 CPV P E R+E Sbjct: 377 VCPVKI----PITEQMQRLREE 394 >gi|324505057|gb|ADY42177.1| ATP-binding cassette sub-family E member 1 [Ascaris suum] Length = 609 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 22/56 (39%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 K C C + G +C + +I CI CG+C + CP DAI Sbjct: 27 KNCGLACKKSCPVVRMGKQCIVVETNSKMAEISETLCIGCGICVKKCPYDAIKIIN 82 >gi|307243715|ref|ZP_07525855.1| 4Fe-4S binding domain protein [Peptostreptococcus stomatis DSM 17678] gi|306492924|gb|EFM64937.1| 4Fe-4S binding domain protein [Peptostreptococcus stomatis DSM 17678] Length = 296 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 15/66 (22%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 Y +++CI+C C+ +C +E + + ++CI CG C+ ACPV Sbjct: 243 YRLDKDKCISCGRCKKVCQMNIDPVE---------------NCNHLECIRCGRCKNACPV 287 Query: 116 DAIVEG 121 DAI G Sbjct: 288 DAISCG 293 >gi|311232944|gb|ADP85798.1| iron-sulfur cluster-binding protein [Desulfovibrio vulgaris RCH1] Length = 170 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 20/65 (30%), Gaps = 13/65 (20%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C C CP A+ ++ CI+CG C CP + I Sbjct: 82 DRSLCIRCGRCAEACPVDAVHMDGETGLPYV-------------CIHCGRCVAFCPHECI 128 Query: 119 VEGPN 123 Sbjct: 129 ELVDQ 133 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 5/58 (8%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 C C+ AQA + + G + R CI CG C EACPVDA+ Sbjct: 54 CLACDPAPCAQACPTGAYAQRKGGGVKVDR-----SLCIRCGRCAEACPVDAVHMDGE 106 >gi|255691579|ref|ZP_05415254.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides finegoldii DSM 17565] gi|260622788|gb|EEX45659.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides finegoldii DSM 17565] Length = 300 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 9/65 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C C A C AI + ++D KC CG C +ACP I Sbjct: 138 CSYGCLGCGDCVAACQFDAIHMNPETGLP---------EVDETKCTACGACVKACPKAII 188 Query: 119 VEGPN 123 P Sbjct: 189 EIRPQ 193 Score = 41.2 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 27/81 (33%), Gaps = 8/81 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------DMIKCIYCGLCQ 110 E +C AC C CP I I + + + CI CG C Sbjct: 169 DETKCTACGACVKACPKAIIEIRPQGKKSRRVYVSCVNKDKGAVARKACTVSCIGCGKCV 228 Query: 111 EACPVDAIVEGPNFEFATETR 131 + CP +AI N + + Sbjct: 229 KTCPFEAITLENNLAYIDPNK 249 Score = 40.9 bits (94), Expect = 0.064, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 11/62 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C C CP +AIT+E+ ID KC C C E CP ++I Sbjct: 217 CTVSCIGCGKCVKTCPFEAITLENNLAY-----------IDPNKCKSCRKCVEVCPQNSI 265 Query: 119 VE 120 +E Sbjct: 266 IE 267 >gi|224826604|ref|ZP_03699705.1| formate dehydrogenase, alpha subunit [Lutiella nitroferrum 2002] gi|224601205|gb|EEG07387.1| formate dehydrogenase, alpha subunit [Lutiella nitroferrum 2002] Length = 885 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 29/86 (33%), Gaps = 12/86 (13%) Query: 59 GEERCIACKLCEAICP-------AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 RCI C+ C IC +A + R + C+ CG C + Sbjct: 137 DMTRCIDCQRCVRICEQLQGQFVWEAWHRGAALRIAPAHGA----TLLEGGCVSCGACVD 192 Query: 112 ACPVDAIVEGPN-FEFATETRQELYY 136 +CP A+ + E TR Y Sbjct: 193 SCPSGALYDKRVTVEVEGWTRTTCVY 218 >gi|224369477|ref|YP_002603641.1| RnfB [Desulfobacterium autotrophicum HRM2] gi|223692194|gb|ACN15477.1| RnfB [Desulfobacterium autotrophicum HRM2] Length = 273 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 22/64 (34%), Gaps = 11/64 (17%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C C AI +E G ++ CI CG C +ACP I Sbjct: 142 CLGFGDCVEACKYDAIHVEDGLAV-----------VNYDHCIGCGACVKACPRSIITMAD 190 Query: 123 NFEF 126 E Sbjct: 191 FHEP 194 >gi|167630565|ref|YP_001681064.1| 4fe-4S ferredoxin, iron-sulfur binding domain protein [Heliobacterium modesticaldum Ice1] gi|167593305|gb|ABZ85053.1| 4fe-4S ferredoxin, iron-sulfur binding domain protein [Heliobacterium modesticaldum Ice1] Length = 60 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 11/63 (17%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C+ C C CP AI+ Y ID KCI CG C + CP Sbjct: 1 MTHIINDDCVNCGACAPECPTNAISEGPDK-----------YIIDADKCIDCGACADVCP 49 Query: 115 VDA 117 V A Sbjct: 50 VGA 52 Score = 35.1 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 12/27 (44%), Positives = 15/27 (55%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPN 123 I C+ CG C CP +AI EGP+ Sbjct: 3 HIINDDCVNCGACAPECPTNAISEGPD 29 >gi|297619403|ref|YP_003707508.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanococcus voltae A3] gi|297378380|gb|ADI36535.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus voltae A3] Length = 81 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 25/69 (36%), Gaps = 8/69 (11%) Query: 60 EERCIACKLCEAICPAQAITIE--------SGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 ERC C C CP A + S + V + C CG C E Sbjct: 8 PERCHGCGNCVVACPVNAQDADVFGGKGPSSDEKLIMRIENGVVTVLKPELCGGCGACIE 67 Query: 112 ACPVDAIVE 120 ACPVDAI Sbjct: 68 ACPVDAIEL 76 >gi|149370901|ref|ZP_01890496.1| Pyridine nucleotide-disulphide oxidoreductase domain protein [unidentified eubacterium SCB49] gi|149355687|gb|EDM44245.1| Pyridine nucleotide-disulphide oxidoreductase domain protein [unidentified eubacterium SCB49] Length = 531 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 16/76 (21%), Positives = 24/76 (31%), Gaps = 10/76 (13%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R R NG +CI+C C C + +I C+ CG Sbjct: 438 RMFSKFRITTNG-GQCISCGNCSNSCEMGIDVRAYAQKGE---------NIVRSSCVGCG 487 Query: 108 LCQEACPVDAIVEGPN 123 +C CP + + Sbjct: 488 VCSAVCPRGVLKLEND 503 >gi|90408373|ref|ZP_01216536.1| electron transport complex protein RnfB [Psychromonas sp. CNPT3] gi|90310536|gb|EAS38658.1| electron transport complex protein RnfB [Psychromonas sp. CNPT3] Length = 190 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 22/63 (34%), Gaps = 10/63 (15%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C CP AI + + + +C C LC CP D I Sbjct: 111 DECIGCTKCIQACPVDAILGAT----------RQMHTVITDECTGCELCVAPCPTDCIDM 160 Query: 121 GPN 123 P Sbjct: 161 LPI 163 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 12/21 (57%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 I +CI C C +ACPVDAI Sbjct: 108 IREDECIGCTKCIQACPVDAI 128 >gi|45649071|gb|AAQ08814.1| BzdV [Azoarcus sp. CIB] Length = 849 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 6/71 (8%) Query: 55 RYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDIDMIK----CIYCGL 108 + CI C+ C C +E +RT I C +C Sbjct: 192 FFDRDYNLCIDCRRCLVACNDVRGVGCLEVKEVETPQGKRTYVGTIAPTLLESGCTFCQA 251 Query: 109 CQEACPVDAIV 119 C CP A++ Sbjct: 252 CVTVCPTGALM 262 >gi|87120635|ref|ZP_01076529.1| formate dehydrogenase, alpha subunit [Marinomonas sp. MED121] gi|86164278|gb|EAQ65549.1| formate dehydrogenase, alpha subunit [Marinomonas sp. MED121] Length = 963 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 22/74 (29%), Gaps = 3/74 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T S C+ CG C + Sbjct: 176 YFTFDASKCIVCNRCVRACEETQGTFALTISSRGFESKVSPGQDDAFMDSDCVSCGACVQ 235 Query: 112 ACPVDAIVEGPNFE 125 ACP ++E + Sbjct: 236 ACPTATLMETSIID 249 >gi|86149699|ref|ZP_01067929.1| iron-sulfur cluster binding protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|88597734|ref|ZP_01100967.1| iron-sulfur cluster binding protein [Campylobacter jejuni subsp. jejuni 84-25] gi|218561757|ref|YP_002343536.1| putative iron-sulfur protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|85839967|gb|EAQ57226.1| iron-sulfur cluster binding protein [Campylobacter jejuni subsp. jejuni CF93-6] gi|88190038|gb|EAQ94014.1| iron-sulfur cluster binding protein [Campylobacter jejuni subsp. jejuni 84-25] gi|112359463|emb|CAL34247.1| putative iron-sulfur protein [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|284925369|gb|ADC27721.1| iron-sulfur cluster binding protein [Campylobacter jejuni subsp. jejuni IA3902] gi|315927756|gb|EFV07083.1| iron-sulfur cluster binding protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 479 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 22/89 (24%), Gaps = 10/89 (11%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-----QAITIESGPRCHDGTRR 92 R + RCI C C CP + P Sbjct: 287 EVHVILFDHNRSKMLAHEDYYEALRCIRCGACMNFCPVYDQIGGHAYQTTYPGPIGEVIS 346 Query: 93 TVRYDIDM-----IKCIYCGLCQEACPVD 116 + ID C CG C E CPV Sbjct: 347 PNIFGIDHTGDILNFCSLCGRCSEVCPVQ 375 >gi|326384264|ref|ZP_08205946.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein [Gordonia neofelifaecis NRRL B-59395] gi|326197129|gb|EGD54321.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein [Gordonia neofelifaecis NRRL B-59395] Length = 546 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 18/54 (33%), Gaps = 3/54 (5%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 A+CP I ID CI CG C + CPV AI Sbjct: 1 MAVCPVNCIHPTPDEPD---FLTAEMLYIDPETCIDCGACIDECPVSAIYPDDQ 51 >gi|326791479|ref|YP_004309300.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427] gi|326542243|gb|ADZ84102.1| NADH dehydrogenase (quinone) [Clostridium lentocellum DSM 5427] Length = 595 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 10/62 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + E+C C C +CP AI+ + ID KCI CG C + C Sbjct: 541 YHITEQCKGCTACARVCPVGAISGT----------VKALHTIDQEKCIKCGACMDKCKFA 590 Query: 117 AI 118 AI Sbjct: 591 AI 592 Score = 33.9 bits (76), Expect = 7.3, Method: Composition-based stats. Identities = 10/42 (23%), Positives = 13/42 (30%) Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 +C G + +C C C CPV AI Sbjct: 524 HIYDHKCPAGQCTALLQYHITEQCKGCTACARVCPVGAISGT 565 >gi|298528318|ref|ZP_07015722.1| molybdopterin oxidoreductase [Desulfonatronospira thiodismutans ASO3-1] gi|298511970|gb|EFI35872.1| molybdopterin oxidoreductase [Desulfonatronospira thiodismutans ASO3-1] Length = 353 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 26/90 (28%), Gaps = 13/90 (14%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAIC--------PAQAITIESGPRCHD 88 P R E +C+ C C C + A Sbjct: 123 PKRFTPRGVLHRTEAVNPFILRDFSKCVLCGRCVQACCDIQVNNAISHAYRGIKSKIAAA 182 Query: 89 GTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 G R C++CG C +ACPV +I Sbjct: 183 GDRPLK-----ESDCVFCGECMQACPVGSI 207 >gi|218134954|ref|ZP_03463758.1| hypothetical protein BACPEC_02859 [Bacteroides pectinophilus ATCC 43243] gi|217990339|gb|EEC56350.1| hypothetical protein BACPEC_02859 [Bacteroides pectinophilus ATCC 43243] Length = 322 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 23/72 (31%), Gaps = 15/72 (20%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L + +C+ C C C ++ CI CG C +A Sbjct: 230 LLKITVDSSKCVGCGQCSKACKMDVDVCKTPDHPE---------------CIRCGACIKA 274 Query: 113 CPVDAIVEGPNF 124 CP DAI + Sbjct: 275 CPKDAIYLLAIY 286 >gi|182413362|ref|YP_001818428.1| hydrogenase, Fe-only [Opitutus terrae PB90-1] gi|177840576|gb|ACB74828.1| hydrogenase, Fe-only [Opitutus terrae PB90-1] Length = 581 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 3/68 (4%) Query: 59 GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115 +CI C C +C Q + S TR DI + + C+ CG C CP Sbjct: 142 DFTKCIKCGRCIQVCQEMQNVWALSFLDRGINTRMAPAGDITLAESPCVKCGQCSAHCPT 201 Query: 116 DAIVEGPN 123 AIVE Sbjct: 202 GAIVEKDE 209 >gi|167748210|ref|ZP_02420337.1| hypothetical protein ANACAC_02954 [Anaerostipes caccae DSM 14662] gi|167652202|gb|EDR96331.1| hypothetical protein ANACAC_02954 [Anaerostipes caccae DSM 14662] Length = 431 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 12/80 (15%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP---AQAITIESGPRCHDGTRRTVRY 96 + +++C+ C C C QAIT + R Sbjct: 335 PNIVPADDIDRTFILYPDFNKDKCVGCGRCYVSCFDGGHQAITWDEEERKPV-------- 386 Query: 97 DIDMIKCIYCGLCQEACPVD 116 ++ KC+ C LC CPV Sbjct: 387 -LNEDKCVGCHLCLNVCPVM 405 >gi|222054705|ref|YP_002537067.1| molybdopterin oxidoreductase [Geobacter sp. FRC-32] gi|221563994|gb|ACM19966.1| molybdopterin oxidoreductase [Geobacter sp. FRC-32] Length = 842 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 21/66 (31%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + RCI C+ C + D + C +CG C ACP Sbjct: 140 ESDPNRCILCEKCVKVDHEIVGCDAIAVVNRGEATIIDTVDGKPLNCEFCGNCVAACPTG 199 Query: 117 AIVEGP 122 ++ P Sbjct: 200 TLISKP 205 >gi|28199470|ref|NP_779784.1| ferredoxin [Xylella fastidiosa Temecula1] gi|182682201|ref|YP_001830361.1| ferredoxin [Xylella fastidiosa M23] gi|28057585|gb|AAO29433.1| ferredoxin II [Xylella fastidiosa Temecula1] gi|182632311|gb|ACB93087.1| electron transport complex, RnfABCDGE type, B subunit [Xylella fastidiosa M23] gi|307578471|gb|ADN62440.1| ferredoxin [Xylella fastidiosa subsp. fastidiosa GB514] Length = 139 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 23/66 (34%), Gaps = 10/66 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C C CP AI + + + C C LC ACPVD Sbjct: 83 WIVEADCIGCTKCIQACPVDAIIGGAK----------HMHTVIAALCTGCELCVPACPVD 132 Query: 117 AIVEGP 122 I P Sbjct: 133 CIELHP 138 >gi|15598686|ref|NP_252180.1| electron transport complex protein RnfB [Pseudomonas aeruginosa PAO1] gi|107103020|ref|ZP_01366938.1| hypothetical protein PaerPA_01004089 [Pseudomonas aeruginosa PACS2] gi|218890265|ref|YP_002439129.1| electron transport complex protein RnfB [Pseudomonas aeruginosa LESB58] gi|254242171|ref|ZP_04935493.1| hypothetical protein PA2G_02902 [Pseudomonas aeruginosa 2192] gi|17369007|sp|Q9HYB9|RNFB_PSEAE RecName: Full=Electron transport complex protein rnfB gi|226735423|sp|B7UWJ3|RNFB_PSEA8 RecName: Full=Electron transport complex protein rnfB gi|9949636|gb|AAG06878.1|AE004770_3 probable ferredoxin [Pseudomonas aeruginosa PAO1] gi|126195549|gb|EAZ59612.1| hypothetical protein PA2G_02902 [Pseudomonas aeruginosa 2192] gi|218770488|emb|CAW26253.1| probable ferredoxin [Pseudomonas aeruginosa LESB58] Length = 188 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 25/70 (35%), Gaps = 10/70 (14%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 R E CI C C CP AI + + + + +C C LC E C Sbjct: 104 RVAYIREAECIGCTKCIQACPVDAIVGAA----------RLMHTVIADECTGCDLCLEPC 153 Query: 114 PVDAIVEGPN 123 PVD I Sbjct: 154 PVDCIEMREI 163 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 16/38 (42%) Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E P I +CI C C +ACPVDAI Sbjct: 91 EPEPLDAAEETPPRVAYIREAECIGCTKCIQACPVDAI 128 >gi|332374474|gb|AEE62378.1| unknown [Dendroctonus ponderosae] Length = 609 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 22/56 (39%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 K C C + G C + + + I CI CG+C + CP DAI Sbjct: 28 KRCRQECKKSCPVVRMGKLCIEVSPNSKIAVISEELCIGCGICVKKCPFDAINIIN 83 >gi|328948184|ref|YP_004365521.1| fumarate reductase/succinate dehydrogenase flavoprotein domain protein [Treponema succinifaciens DSM 2489] gi|328448508|gb|AEB14224.1| fumarate reductase/succinate dehydrogenase flavoprotein domain protein [Treponema succinifaciens DSM 2489] Length = 670 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 22/64 (34%), Gaps = 2/64 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY--DIDMIKCIYCGLCQEACPVD 116 E C C C +CP AI+ R ++ C CG C ACP Sbjct: 591 NENACNGCGQCANVCPYGAISYIEKDFRGPNRTTITRRVSQVNKAMCHGCGACTVACPSG 650 Query: 117 AIVE 120 A+ Sbjct: 651 AMDL 654 >gi|326533340|dbj|BAJ93642.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 604 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 23/56 (41%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 K C C +++G C + + I CI CG+C + CP DAI Sbjct: 19 KKCRQECKKSCPVVKTGKLCIEVGPASKVSFISEELCIGCGICVKKCPFDAIEIIN 74 >gi|289524083|ref|ZP_06440937.1| putative pyruvate formate-lyase-activating enzyme [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502739|gb|EFD23903.1| putative pyruvate formate-lyase-activating enzyme [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 305 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 26/82 (31%), Positives = 33/82 (40%), Gaps = 17/82 (20%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 +C+ C C +CP AI + P I CI CG C ACP DA+ Sbjct: 59 YKCMHCGTCAHVCPMGAIEFDGIP------------IIRRSMCIACGSCSAACPSDALNL 106 Query: 121 -GPNF---EFATE-TRQELYYD 137 G + E E R LY+D Sbjct: 107 IGKEYTVGELMKEIERDVLYFD 128 Score = 35.1 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 4/48 (8%) Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 CP + + G KC++CG C CP+ AI Sbjct: 35 CPLRCWWCHNPEGIDSGKELM----YFEYKCMHCGTCAHVCPMGAIEF 78 >gi|262382027|ref|ZP_06075165.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. 2_1_33B] gi|262297204|gb|EEY85134.1| pyruvate-formate lyase-activating enzyme [Bacteroides sp. 2_1_33B] Length = 301 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 11/62 (17%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 ++CI C C CP A+T+ D C CG C E CP A+ Sbjct: 49 RKKCIGCGACVNACPVGALTLTQAGIVTD-----------RSLCRTCGRCAEVCPTLAME 97 Query: 120 EG 121 Sbjct: 98 MS 99 >gi|238916870|ref|YP_002930387.1| electron transport complex protein RnfB [Eubacterium eligens ATCC 27750] gi|238872230|gb|ACR71940.1| electron transport complex protein RnfB [Eubacterium eligens ATCC 27750] Length = 263 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 28/86 (32%), Gaps = 11/86 (12%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P++ T + CI C LC C AIT+E+ Sbjct: 189 IPYKSNYTVNCSSNDKGKDVMSACSVGCIGCMLCTKQCEFGAITVENNIAH--------- 239 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEG 121 ID KC CG C E CP I Sbjct: 240 --IDYSKCTGCGKCAEKCPKKIIHLH 263 Score = 33.9 bits (76), Expect = 7.2, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 5/78 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGP-----RCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + +C AC C A+CP I I C + + CI C LC + C Sbjct: 167 DKGKCKACGKCVAVCPRHLIEIIPYKSNYTVNCSSNDKGKDVMSACSVGCIGCMLCTKQC 226 Query: 114 PVDAIVEGPNFEFATETR 131 AI N ++ Sbjct: 227 EFGAITVENNIAHIDYSK 244 >gi|218885428|ref|YP_002434749.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218756382|gb|ACL07281.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 652 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 22/64 (34%), Gaps = 7/64 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RC+ C C CP AI R ++ + C CG+C CP AI Sbjct: 580 DVRRCVGCGKCITTCPYGAIEWME-------LRGEMKARVIETVCQGCGICTVTCPQGAI 632 Query: 119 VEGP 122 Sbjct: 633 QLQH 636 Score = 41.6 bits (96), Expect = 0.036, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 30/97 (30%), Gaps = 13/97 (13%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPA----QAITIESG----PRCHDGTRRTVRYD 97 F+ + + E C C LC CP+ A G + Sbjct: 225 NFKVDVRRKATYVDWELCTGCGLCMEKCPSRKSPDAFNEHVGVTTSINIPFPQAIPKKAI 284 Query: 98 IDMIKCI-----YCGLCQEACPVDAIVEGPNFEFATE 129 ID C CG+C + CP AI + TE Sbjct: 285 IDPTSCRQFVKGKCGVCAKVCPTGAIRYDMEDQVVTE 321 >gi|182417534|ref|ZP_02948861.1| pyruvate formate-lyase 2-activating enzyme [Clostridium butyricum 5521] gi|237665714|ref|ZP_04525702.1| glycyl-radical enzyme activating protein family [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378703|gb|EDT76230.1| pyruvate formate-lyase 2-activating enzyme [Clostridium butyricum 5521] gi|237658661|gb|EEP56213.1| glycyl-radical enzyme activating protein family [Clostridium butyricum E4 str. BoNT E BL5262] Length = 298 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 26/85 (30%), Gaps = 11/85 (12%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 K + + +CI C C CP+QAI + ID Sbjct: 32 KCKWCANPESQMEKVQILYDSTKCIHCLSCVNSCPSQAIQHQDDKII-----------ID 80 Query: 100 MIKCIYCGLCQEACPVDAIVEGPNF 124 KC C C CP A+ + Sbjct: 81 HEKCTGCLTCANICPQKALENEGEY 105 >gi|150403365|ref|YP_001330659.1| cobyrinic acid ac-diamide synthase [Methanococcus maripaludis C7] gi|150034395|gb|ABR66508.1| Cobyrinic acid ac-diamide synthase [Methanococcus maripaludis C7] Length = 282 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 26/107 (24%), Positives = 37/107 (34%), Gaps = 22/107 (20%) Query: 24 LRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE-------RCIACKLCEAICPAQ 76 K + E + F E + G + +CI C+ C C Sbjct: 22 FSELLDKKNIADCDVEAPNLHLMFENEIIKTKEYIGSQTAIIDSDKCIKCEKCLE-CRFG 80 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 AIT E ++ +KC CGLC+ CPVDA+ N Sbjct: 81 AITSE--------------IKVNPLKCEGCGLCKYVCPVDAVTMVDN 113 >gi|119873466|ref|YP_931473.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Pyrobaculum islandicum DSM 4184] gi|119674874|gb|ABL89130.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum islandicum DSM 4184] Length = 285 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 28/76 (36%), Positives = 33/76 (43%), Gaps = 9/76 (11%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 RR E+C AC LC +CP QAI ++ V +D KC CGLC EAC Sbjct: 181 RRPVIDMEKCTACFLCAGVCPTQAIEVDEDE---------VMLKVDSYKCAECGLCAEAC 231 Query: 114 PVDAIVEGPNFEFATE 129 P AI E Sbjct: 232 PEGAIKLVEGGEPVET 247 Score = 37.4 bits (85), Expect = 0.75, Method: Composition-based stats. Identities = 14/40 (35%), Positives = 16/40 (40%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + + G R IDM KC C LC CP AI Sbjct: 166 SYDREKAVELGLVNPRRPVIDMEKCTACFLCAGVCPTQAI 205 Score = 33.9 bits (76), Expect = 7.6, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 11/50 (22%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 C+ C CPA A+ ++ + C+ CG+C ACP Sbjct: 20 CRKCVDACPAGALYVDG-----------RWVKAEPSLCVGCGVCMSACPT 58 >gi|120603177|ref|YP_967577.1| methyl-viologen-reducing hydrogenase, delta subunit [Desulfovibrio vulgaris DP4] gi|120563406|gb|ABM29150.1| putative adenylylsulfate reductase-associated electron transfer protein QmoB [Desulfovibrio vulgaris DP4] Length = 758 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 21/68 (30%), Gaps = 10/68 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L RC CK C CP A+ + + +C CG C A Sbjct: 541 LSYPIFNFVRCTQCKRCTEECPFGALDDDEKGTPKP----------NYSRCRRCGTCMGA 590 Query: 113 CPVDAIVE 120 CP I Sbjct: 591 CPERVISF 598 >gi|46579100|ref|YP_009908.1| iron-sulfur cluster-binding protein [Desulfovibrio vulgaris str. Hildenborough] gi|46448513|gb|AAS95167.1| iron-sulfur cluster-binding protein [Desulfovibrio vulgaris str. Hildenborough] Length = 162 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 20/65 (30%), Gaps = 13/65 (20%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C C CP A+ ++ CI+CG C CP + I Sbjct: 74 DRSLCIRCGRCAEACPVDAVHMDGETGLPYV-------------CIHCGRCVAFCPHECI 120 Query: 119 VEGPN 123 Sbjct: 121 ELVDQ 125 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 5/58 (8%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 C C+ AQA + + G + R CI CG C EACPVDA+ Sbjct: 46 CLACDPAPCAQACPTGAYAQRKGGGVKVDR-----SLCIRCGRCAEACPVDAVHMDGE 98 >gi|323492348|ref|ZP_08097501.1| electron transport complex protein RnfC [Vibrio brasiliensis LMG 20546] gi|323313395|gb|EGA66506.1| electron transport complex protein RnfC [Vibrio brasiliensis LMG 20546] Length = 728 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 9/56 (16%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI----KCIYCGLCQEACP 114 CI C C CPA + P+ + +D CI CG C CP Sbjct: 378 CIRCGQCAEACPASLL-----PQQLVWHAKAEEFDKCEELNIKDCIECGACAFVCP 428 Score = 35.5 bits (80), Expect = 2.3, Method: Composition-based stats. Identities = 10/24 (41%), Positives = 14/24 (58%) Query: 91 RRTVRYDIDMIKCIYCGLCQEACP 114 R+ + + + CI CG C EACP Sbjct: 366 RKEISPNQYEMACIRCGQCAEACP 389 >gi|317472264|ref|ZP_07931592.1| dihydroorotate dehydrogenase [Anaerostipes sp. 3_2_56FAA] gi|316900221|gb|EFV22207.1| dihydroorotate dehydrogenase [Anaerostipes sp. 3_2_56FAA] Length = 418 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 24/77 (31%), Gaps = 6/77 (7%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 + +++C+ C C C G + + + ++ Sbjct: 322 PNIVPADDIDRTFILYPDFNKDKCVGCGRCYVSCFDG------GHQAITWDEKERKPVLN 375 Query: 100 MIKCIYCGLCQEACPVD 116 KC+ C LC CPV Sbjct: 376 EDKCVGCHLCLNVCPVM 392 >gi|308271021|emb|CBX27631.1| hypothetical protein N47_H24530 [uncultured Desulfobacterium sp.] Length = 263 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 28/108 (25%), Positives = 41/108 (37%), Gaps = 14/108 (12%) Query: 29 KAKTTINYPFE-KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH 87 + T+ YP RF G + + C LC CP AI++ Sbjct: 11 QKYRTMAYPDGSPPELPARFAGRPVVNQLNCESN----CNLCITACPVAAISLSQETGGP 66 Query: 88 DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 IDM +CI+C C+ A DAI + A+ +R EL+ Sbjct: 67 V---------IDMGRCIFCRACESAYLADAIHFSREYRLASSSRSELF 105 >gi|307354602|ref|YP_003895653.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307354608|ref|YP_003895659.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307157835|gb|ADN37215.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanoplanus petrolearius DSM 11571] gi|307157841|gb|ADN37221.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanoplanus petrolearius DSM 11571] Length = 675 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 23/80 (28%), Gaps = 7/80 (8%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR----- 95 + R E ++ C C C +CP Sbjct: 238 RKKARGTRNEAEMKADGITGSGCNGCGDCATVCPVIKPNPFEFGMAPRKAIYIYHAQVMP 297 Query: 96 --YDIDMIKCIYCGLCQEAC 113 Y ID C+ CGLC +AC Sbjct: 298 LQYTIDYDACVKCGLCVDAC 317 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 28/80 (35%), Gaps = 9/80 (11%) Query: 45 PRFRGEHALRRYPNG--EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 P +G+ L Y E+ C C +C CP A+++ + K Sbjct: 581 PIHQGKVQLEPYFAQCMEDLCAGCGMCVPQCPYGALSLTEK-------NGRQVMQVTEAK 633 Query: 103 CIYCGLCQEACPVDAIVEGP 122 C CG C CP AI Sbjct: 634 CKGCGTCGGFCPGGAIKMQH 653 >gi|261403596|ref|YP_003247820.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus vulcanius M7] gi|261370589|gb|ACX73338.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus vulcanius M7] Length = 658 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 22/80 (27%), Positives = 29/80 (36%), Gaps = 7/80 (8%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAIT-------IESGPRCHDGTRRTVRYDI 98 F + E+ C C C A+CP + + Y I Sbjct: 228 NFEVTIEKKPRYVDEDICTGCGACAAVCPIEVPNEFDLGLGTRKAIYVPFAQAIPLVYTI 287 Query: 99 DMIKCIYCGLCQEACPVDAI 118 DM CI CGLC++AC AI Sbjct: 288 DMEHCIRCGLCEKACGPGAI 307 Score = 41.2 bits (95), Expect = 0.043, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 7/70 (10%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + R E+ C C++C +CP AIT + ++ + C CG C Sbjct: 571 IEMIRAIVDEDVCGGCQVCAKMCPYNAITYVEKD-------GHLIAQVNDVACKGCGACA 623 Query: 111 EACPVDAIVE 120 ACP A+ Sbjct: 624 GACPSGAMQL 633 >gi|240948344|ref|ZP_04752730.1| quinol dehydrogenase membrane component [Actinobacillus minor NM305] gi|240297383|gb|EER47924.1| quinol dehydrogenase membrane component [Actinobacillus minor NM305] Length = 297 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 5/73 (6%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 ++ RC C C +CP R + + CI CG C + Sbjct: 222 IKVNVVDRNRCDRCMDCYNVCP-----EPQVLRLPLHGKPEDSQIVLSQDCISCGRCIDV 276 Query: 113 CPVDAIVEGPNFE 125 CP + G FE Sbjct: 277 CPENVFAFGSRFE 289 >gi|225027330|ref|ZP_03716522.1| hypothetical protein EUBHAL_01586 [Eubacterium hallii DSM 3353] gi|224955332|gb|EEG36541.1| hypothetical protein EUBHAL_01586 [Eubacterium hallii DSM 3353] Length = 281 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 25/123 (20%), Positives = 42/123 (34%), Gaps = 15/123 (12%) Query: 1 MRI--FRCNVSFLFLKE--FVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRY 56 M+I + ++FL F + L + FK + + +L R Sbjct: 170 MKIANLERIMFWIFLVGNTFYYIVGIVLAFVFKDNRAFCKYLCPVTVFLKPMSYFSLLRV 229 Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E +CI C C +CP + + +G +CI C C + CP Sbjct: 230 HCDENKCIHCGKCLKVCPMNVEVNKESRKRKNG-----------TECILCYECTKVCPTK 278 Query: 117 AIV 119 A+ Sbjct: 279 ALH 281 >gi|315231321|ref|YP_004071757.1| ketoisovalerate oxidoreductase VorD-like subunit [Thermococcus barophilus MP] gi|315184349|gb|ADT84534.1| ketoisovalerate oxidoreductase VorD-like subunit [Thermococcus barophilus MP] Length = 105 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 24/78 (30%), Gaps = 10/78 (12%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 F G+ E +CI C +C C P + +D C Sbjct: 36 NFTGDWRTFIPVIDESKCIKCYICWKFC----------PEPSIYIKEDGYVAVDYDYCKG 85 Query: 106 CGLCQEACPVDAIVEGPN 123 CG+C CP AI Sbjct: 86 CGICANECPTKAITMVRE 103 >gi|170757405|ref|YP_001780996.1| iron-sulfur cluster-binding protein [Clostridium botulinum B1 str. Okra] gi|169122617|gb|ACA46453.1| iron-sulfur cluster-binding protein [Clostridium botulinum B1 str. Okra] Length = 425 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 3/69 (4%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 ++RC+ C C +CP +A + ++ C+ CG+C + C + Sbjct: 288 NIDKDRCVGCGKCTKVCPMEA---IKLKETSLENHNSKIAELSEDLCLGCGVCVKNCKTN 344 Query: 117 AIVEGPNFE 125 AI E Sbjct: 345 AIKLVRRKE 353 Score = 40.5 bits (93), Expect = 0.070, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 6/64 (9%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 PN C C CEA A+ + +ID +C+ CG C + CP++ Sbjct: 254 PNFICNCCKC-HCEAFVSAK-----KFGFLVPVNTTSYLPNIDKDRCVGCGKCTKVCPME 307 Query: 117 AIVE 120 AI Sbjct: 308 AIKL 311 >gi|167748563|ref|ZP_02420690.1| hypothetical protein ANACAC_03336 [Anaerostipes caccae DSM 14662] gi|167651877|gb|EDR96006.1| hypothetical protein ANACAC_03336 [Anaerostipes caccae DSM 14662] Length = 260 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 12/72 (16%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 +R + + P+ ++C C LC +CP AI E CI Sbjct: 172 PYREYNGVPMKPSAGKQCKKCGLCARLCPVGAIPAEHPEETLK------------ETCIS 219 Query: 106 CGLCQEACPVDA 117 C C CP A Sbjct: 220 CMRCIAVCPEHA 231 >gi|145589581|ref|YP_001156178.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145047987|gb|ABP34614.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 696 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 23/64 (35%), Gaps = 9/64 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ C C C + CP A+ + C+ CG+C + CP A+ Sbjct: 570 NKDACTLCMSCVSSCPEGALLDNPDEPILSFIEKQ---------CVQCGICVQTCPEHAL 620 Query: 119 VEGP 122 P Sbjct: 621 TLDP 624 Score = 42.0 bits (97), Expect = 0.030, Method: Composition-based stats. Identities = 11/24 (45%), Positives = 11/24 (45%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEG 121 ID C CG C E CP AI Sbjct: 185 IDPEMCTRCGACVEVCPEGAIDLS 208 Score = 37.0 bits (84), Expect = 0.97, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 7/55 (12%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C +C AI+ +++ C+ CG C CP A+ Sbjct: 311 VGCNACIDVCSTGAISSLFKGGQGS-------VEVNPNLCMGCGACSTVCPSGAM 358 Score = 33.9 bits (76), Expect = 6.6, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 31/86 (36%), Gaps = 20/86 (23%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + P E C C C +CP AI + + I++ KC C AC Sbjct: 182 QNPIDPEMCTRCGACVEVCPEGAID--------------LSFQINLDKCKSHRSCVTAC- 226 Query: 115 VDAIVEGPNFEFATETRQ---ELYYD 137 A + +F+ A R +L D Sbjct: 227 --ASIGAISFDRADRKRNSEFDLILD 250 >gi|37787353|gb|AAP50521.1| Hox1U [Thiocapsa roseopersicina] Length = 243 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 24/68 (35%), Gaps = 4/68 (5%) Query: 55 RYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLCQ 110 + +RCI C C +C A T + R D T C CG C Sbjct: 149 MFRLDHDRCILCTRCVRVCDEIEGAHTWDVMGRGSDCRVITDMAQPWGESDTCTSCGKCV 208 Query: 111 EACPVDAI 118 + CP A+ Sbjct: 209 QVCPTGAL 216 >gi|46579262|ref|YP_010070.1| heterodisulfide reductase, iron-sulfur-binding subunit [Desulfovibrio vulgaris str. Hildenborough] gi|46448676|gb|AAS95329.1| heterodisulfide reductase, iron-sulfur-binding subunit, putative [Desulfovibrio vulgaris str. Hildenborough] gi|311233089|gb|ADP85943.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfovibrio vulgaris RCH1] Length = 758 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 21/68 (30%), Gaps = 10/68 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L RC CK C CP A+ + + +C CG C A Sbjct: 541 LSYPIFNFVRCTQCKRCTEECPFGALDDDEKGTPKP----------NYSRCRRCGTCMGA 590 Query: 113 CPVDAIVE 120 CP I Sbjct: 591 CPERVISF 598 >gi|307249377|ref|ZP_07531370.1| Electron transport complex protein rnfC [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306858599|gb|EFM90662.1| Electron transport complex protein rnfC [Actinobacillus pleuropneumoniae serovar 4 str. M62] Length = 645 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 34/107 (31%), Gaps = 3/107 (2%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E CI C C CP + + + + CI CG+C CP Sbjct: 379 PEPERSCIRCSSCSDACPVGLLPQQLY-WYARSEDHDKSKEYHLDACIECGVCAYVCP-S 436 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 I F E+ ++ R+E+ R + + R Sbjct: 437 YIPLIQYFRQEKAKITEIEEKAKKAEEAKARFEAREAR-LQKEKDAR 482 >gi|297617564|ref|YP_003702723.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Syntrophothermus lipocalidus DSM 12680] gi|297145401|gb|ADI02158.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Syntrophothermus lipocalidus DSM 12680] Length = 465 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 26/67 (38%), Gaps = 2/67 (2%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 +R+ ERC C C CP AI R ID + C CGLC C Sbjct: 281 KRFEINAERCAYCLTCYRNCPHMAIEFRRDDR--YANLYGEACFIDDLSCRGCGLCYALC 338 Query: 114 PVDAIVE 120 P AI E Sbjct: 339 PAQAITE 345 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 12/38 (31%), Positives = 18/38 (47%) Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 R R++I+ +C YC C CP AI + +A Sbjct: 277 MRGEKRFEINAERCAYCLTCYRNCPHMAIEFRRDDRYA 314 >gi|284162167|ref|YP_003400790.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Archaeoglobus profundus DSM 5631] gi|284012164|gb|ADB58117.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Archaeoglobus profundus DSM 5631] Length = 91 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 6/72 (8%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G A++ ++C+ C C +CP I + + V +D C CG+ Sbjct: 20 GSWAVKIPKVNPDKCVGCGECRMLCPDGCIELVHVEE------KKVVAKVDYDYCKGCGI 73 Query: 109 CQEACPVDAIVE 120 C + CP +AI Sbjct: 74 CSDICPANAIEM 85 >gi|284049120|ref|YP_003399459.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidaminococcus fermentans DSM 20731] gi|283953341|gb|ADB48144.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidaminococcus fermentans DSM 20731] Length = 375 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 24/61 (39%), Gaps = 10/61 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 EE C C C C + AI+ + H ID KC CG C AC DAI Sbjct: 193 DEELCRGCGRCAKECGSDAISYGENHKAH----------IDEEKCAGCGRCIGACGFDAI 242 Query: 119 V 119 Sbjct: 243 Q 243 >gi|260892959|ref|YP_003239056.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ammonifex degensii KC4] gi|260865100|gb|ACX52206.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ammonifex degensii KC4] Length = 416 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 27/96 (28%), Gaps = 9/96 (9%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ-------AITIESGPRCHDGTR 91 E+ C AC C +CPA+ + Sbjct: 82 EEIKGEEGNFEVKVKVNPRYVTAACTACGKCVEVCPAERPNEFNYNLDKTKAIYLPHIFA 141 Query: 92 RTVRYDIDMIKCIY--CGLCQEACPVDAIVEGPNFE 125 +Y IDM C C C E CPV AI E Sbjct: 142 FPYKYVIDMQACQGTSCSKCVEVCPVKAIDLNMQPE 177 Score = 35.1 bits (79), Expect = 3.1, Method: Composition-based stats. Identities = 13/59 (22%), Positives = 15/59 (25%), Gaps = 13/59 (22%) Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP-------------VDAIVEGPNFEF 126 G + + V C CG C E CP AI F F Sbjct: 84 IKGEEGNFEVKVKVNPRYVTAACTACGKCVEVCPAERPNEFNYNLDKTKAIYLPHIFAF 142 >gi|157414388|ref|YP_001481644.1| iron-sulfur cluster binding protein [Campylobacter jejuni subsp. jejuni 81116] gi|157385352|gb|ABV51667.1| iron-sulfur cluster binding protein [Campylobacter jejuni subsp. jejuni 81116] gi|307747032|gb|ADN90302.1| Iron-sulfur cluster binding protein [Campylobacter jejuni subsp. jejuni M1] gi|315932532|gb|EFV11466.1| iron-sulfur cluster binding protein [Campylobacter jejuni subsp. jejuni 327] Length = 479 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 22/89 (24%), Gaps = 10/89 (11%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-----QAITIESGPRCHDGTRR 92 R + RCI C C CP + P Sbjct: 287 EVHVILFDHNRSKMLAHEDYYEALRCIRCGACMNFCPVYDQIGGHAYQTTYPGPIGEVIS 346 Query: 93 TVRYDIDM-----IKCIYCGLCQEACPVD 116 + ID C CG C E CPV Sbjct: 347 PNIFGIDHTGDILNFCSLCGRCSEVCPVQ 375 >gi|281357443|ref|ZP_06243931.1| ferredoxin [Victivallis vadensis ATCC BAA-548] gi|281316046|gb|EFB00072.1| ferredoxin [Victivallis vadensis ATCC BAA-548] Length = 675 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 26/84 (30%), Gaps = 6/84 (7%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI--ESGPRCHDGTRRTVRY 96 E+ S R ++ +CI C C +C R T Sbjct: 592 ERLPVSYDIRHPLIIQ----DRGKCIKCSTCVKVCKEVVNRSLLSPKKRGFYTYVGTAFD 647 Query: 97 DIDMIKCIYCGLCQEACPVDAIVE 120 C CG C EACPV A+ Sbjct: 648 KGFPASCSECGECIEACPVGALDW 671 >gi|1561730|gb|AAC47288.1| Dreg-3 protein [Drosophila melanogaster] Length = 626 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 18/65 (27%), Gaps = 8/65 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP-VDA 117 ++ CI C C C + C C LC CP +D Sbjct: 544 DDDMCINCGKCYMTCADSGYQAIE-------FDKDTHIPHVNDDCTGCTLCVSVCPIIDC 596 Query: 118 IVEGP 122 I P Sbjct: 597 ITMVP 601 >gi|332799924|ref|YP_004461423.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Tepidanaerobacter sp. Re1] gi|332697659|gb|AEE92116.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Tepidanaerobacter sp. Re1] Length = 1174 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 25/80 (31%), Gaps = 16/80 (20%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRRTV----------- 94 A+ E CI C C +CP AI E +G Sbjct: 678 IAVNIPEWQAESCIQCNQCAFVCPHAAIRPFLLNEEEVKNAPEGFVSKKATGRGLDGLSF 737 Query: 95 RYDIDMIKCIYCGLCQEACP 114 R + + C CG+C CP Sbjct: 738 RIQVSPLDCTGCGVCANTCP 757 >gi|332796474|ref|YP_004457974.1| ABC transporter-like protein [Acidianus hospitalis W1] gi|332694209|gb|AEE93676.1| ABC transporter related protein [Acidianus hospitalis W1] Length = 600 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 21/75 (28%), Gaps = 5/75 (6%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 + ++C C CP + I CI CG Sbjct: 1 MRVAVINYDFCKPDKCNL--ECIRFCPIN---RSGSKAIELSEIVKGKPVIYEETCIGCG 55 Query: 108 LCQEACPVDAIVEGP 122 +C + CP +AI Sbjct: 56 ICVKKCPYEAISIVN 70 >gi|328543747|ref|YP_004303856.1| formate dehydrogenase, alpha subunit protein [polymorphum gilvum SL003B-26A1] gi|326413491|gb|ADZ70554.1| Formate dehydrogenase, alpha subunit protein [Polymorphum gilvum SL003B-26A1] Length = 959 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 17/86 (19%), Positives = 27/86 (31%), Gaps = 3/86 (3%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTV--RYDIDM 100 + + + +CI C C C Q + G+R Sbjct: 159 PQWLPKDESNPYFTYDPSKCIVCSRCVRACEEVQGTFALTIEGRGFGSRVAAGLAEPFVA 218 Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEF 126 +C+ CG C +ACP + E E Sbjct: 219 SECVSCGACVQACPTATLQEKSVIEI 244 >gi|304559052|gb|ADM41716.1| Pyridine nucleotide-disulfide oxidoreductase family protein [Edwardsiella tarda FL6-60] Length = 655 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 23/73 (31%), Gaps = 13/73 (17%) Query: 48 RGEHALRRYPNGEERCIACK--LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 R R C C+ C +CP AI + + KCI Sbjct: 18 RIHVIRRGDRRTALLCRHCEDAPCANVCPNGAIE-----------KYNDSIQVRQEKCIG 66 Query: 106 CGLCQEACPVDAI 118 C C ACP AI Sbjct: 67 CKTCVVACPFGAI 79 Score = 37.8 bits (86), Expect = 0.59, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 8/70 (11%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL------CQEAC 113 +E+CI CK C CP AI + + +VR + KC C C AC Sbjct: 61 QEKCIGCKTCVVACPFGAIEVITQSDPRSNHPDSVRANAH--KCDLCDEVADGPSCVAAC 118 Query: 114 PVDAIVEGPN 123 P +A+ Sbjct: 119 PSNALQLISE 128 >gi|317497178|ref|ZP_07955504.1| ferredoxin oxidoreductase [Lachnospiraceae bacterium 5_1_63FAA] gi|291558802|emb|CBL37602.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric [butyrate-producing bacterium SSC/2] gi|316895588|gb|EFV17744.1| ferredoxin oxidoreductase [Lachnospiraceae bacterium 5_1_63FAA] Length = 1173 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 28/103 (27%), Gaps = 20/103 (19%) Query: 31 KTTINYPFEKGSTS-----PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 K + P+ G RG N + CI C C +CP I + Sbjct: 655 KVSDLVPYVDGHMPLGASAFEKRGVAVDVPSWN-PDNCIQCNFCAYVCPHATIRPVAMTE 713 Query: 86 CHDGTR--------------RTVRYDIDMIKCIYCGLCQEACP 114 + ++ C+ CG C CP Sbjct: 714 EEAKAAPAATKTADMTGMPGYKFAMTVTVLDCLGCGSCVNICP 756 >gi|257470938|ref|ZP_05635028.1| hypothetical protein FulcA4_16456 [Fusobacterium ulcerans ATCC 49185] gi|317065136|ref|ZP_07929621.1| pyruvate:ferredoxin oxidoreductase [Fusobacterium ulcerans ATCC 49185] gi|313690812|gb|EFS27647.1| pyruvate:ferredoxin oxidoreductase [Fusobacterium ulcerans ATCC 49185] Length = 100 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 29/64 (45%), Gaps = 10/64 (15%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 ++CI C LC CP AI ++ G R D DM C CG+C +ACP AI Sbjct: 47 RDKCIDCLLCVPCCPDSAIPVKDGKRL----------DFDMDHCKGCGICVKACPFKAIE 96 Query: 120 EGPN 123 Sbjct: 97 LIKE 100 >gi|240103196|ref|YP_002959505.1| putative ATPase RIL [Thermococcus gammatolerans EJ3] gi|239910750|gb|ACS33641.1| Predicted ATPase, RNase L inhibitor-like protein [Thermococcus gammatolerans EJ3] Length = 590 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 24/79 (30%), Gaps = 5/79 (6%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +C LCE +CP G R I C CG+C Sbjct: 6 VIDYDKCNPNKCGHF-LCERVCPVN----RMGGEAIIIDEENYRPIIQEASCTGCGICVH 60 Query: 112 ACPVDAIVEGPNFEFATET 130 CP +AI E E Sbjct: 61 KCPFNAITIVNLPEQLDED 79 >gi|260945002|ref|XP_002616799.1| hypothetical protein CLUG_04040 [Clavispora lusitaniae ATCC 42720] gi|238850448|gb|EEQ39912.1| hypothetical protein CLUG_04040 [Clavispora lusitaniae ATCC 42720] Length = 618 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 25/56 (44%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 K C+ C +++G C + T + I C+ CG+C + CP DAI Sbjct: 29 KKCKQECRKSCPVVKTGKLCIEVTPASKIAFISETLCVGCGICVKKCPFDAINIIN 84 >gi|296127383|ref|YP_003634635.1| hypothetical protein Bmur_2364 [Brachyspira murdochii DSM 12563] gi|296019199|gb|ADG72436.1| protein of unknown function DUF362 [Brachyspira murdochii DSM 12563] Length = 376 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 5/73 (6%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + + + +C+ C +C +CP + + + + + CI C CQE Sbjct: 309 IIPKPVIDKSKCVKCGVCVKVCPVTPLALNFDKKG-----KNSPPEYYYKHCISCYCCQE 363 Query: 112 ACPVDAIVEGPNF 124 CP AI F Sbjct: 364 LCPHKAIFLKRKF 376 >gi|242281233|ref|YP_002993362.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio salexigens DSM 2638] gi|242124127|gb|ACS81823.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio salexigens DSM 2638] Length = 367 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 11/83 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+C C +C C A+A+ ++ + I KC CG C +C AI Sbjct: 190 HPEKCTGCGVCITECAAKALDLDDDGKI-----------IMGGKCTGCGRCFLSCRYGAI 238 Query: 119 VEGPNFEFATETRQELYYDKERL 141 + T++ + Y+K L Sbjct: 239 SIDWKSDVEVFTKRLIEYNKAIL 261 Score = 34.7 bits (78), Expect = 4.1, Method: Composition-based stats. Identities = 7/43 (16%), Positives = 14/43 (32%) Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + + + + KC CG+C C A+ + Sbjct: 172 CASKKGKMHIHVSTAPHLHPEKCTGCGVCITECAAKALDLDDD 214 >gi|188579717|ref|YP_001923162.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methylobacterium populi BJ001] gi|179343215|gb|ACB78627.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methylobacterium populi BJ001] Length = 665 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 9/66 (13%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E C C C CP A+T + + C+ CGLC CP D I Sbjct: 508 EDCTLCLSCVGACPTHALTDSADRPLLA---------FEESLCVQCGLCAATCPEDVIDL 558 Query: 121 GPNFEF 126 P +F Sbjct: 559 TPRIDF 564 Score = 38.5 bits (88), Expect = 0.32, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 16/54 (29%), Gaps = 11/54 (20%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 C C +CP AI ID C CG C CP A Sbjct: 267 TGCTRCLDVCPTGAIASAGDSVA-----------IDPYICAGCGSCAAVCPTGA 309 >gi|147921640|ref|YP_684543.1| Fe-S cluster-binding protein, C-terminal fragment [uncultured methanogenic archaeon RC-I] gi|110619939|emb|CAJ35217.1| conserved hypothetical Fe-S cluster-binding protein, C-terminal fragment [uncultured methanogenic archaeon RC-I] Length = 202 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 32/91 (35%), Gaps = 11/91 (12%) Query: 28 FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH 87 FK T++ G A R +RC C +C CP +A+ Sbjct: 102 FKLAATMDLSRVPAPLLNLASGMVA-TRPVIEVQRCRKCGVCVRDCPPKAMFFSPRRLPE 160 Query: 88 DGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ID KCI C CQE CP A+ Sbjct: 161 ----------IDYKKCIRCYCCQELCPESAV 181 >gi|317470821|ref|ZP_07930202.1| 4Fe-4S binding domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316901648|gb|EFV23581.1| 4Fe-4S binding domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 260 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 25/72 (34%), Gaps = 12/72 (16%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 +R + + P+ ++C C LC +CP AI E CI Sbjct: 172 PYREYNGVPMKPSAGKQCKKCGLCARLCPVGAIPAEHPEETLK------------ETCIS 219 Query: 106 CGLCQEACPVDA 117 C C CP A Sbjct: 220 CMRCIAVCPEHA 231 >gi|307718964|ref|YP_003874496.1| hypothetical protein STHERM_c12820 [Spirochaeta thermophila DSM 6192] gi|306532689|gb|ADN02223.1| hypothetical protein STHERM_c12820 [Spirochaeta thermophila DSM 6192] Length = 289 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 21/65 (32%), Gaps = 9/65 (13%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 N CI C C +C I ID +KCI CG C CP Sbjct: 218 KNCAVACIGCGKCVKVCETVTQAITLEHNLAY---------IDPVKCIACGKCVAECPTG 268 Query: 117 AIVEG 121 AI Sbjct: 269 AIAAT 273 Score = 38.9 bits (89), Expect = 0.22, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 23/77 (29%), Gaps = 8/77 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD--------IDMIKCIYCGLCQ 110 EE+C AC +C +CP + + R + CI CG C Sbjct: 172 DEEKCTACGVCVEVCPRNLFELTPRGKRGRRVWINCRNTEKGALARKNCAVACIGCGKCV 231 Query: 111 EACPVDAIVEGPNFEFA 127 + C A Sbjct: 232 KVCETVTQAITLEHNLA 248 Score = 38.5 bits (88), Expect = 0.33, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 9/64 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C CP AI+++ T +D KC CG+C E CP + Sbjct: 141 CPYGCLHYGDCAEACPFDAISMDP---------VTGLPVVDEEKCTACGVCVEVCPRNLF 191 Query: 119 VEGP 122 P Sbjct: 192 ELTP 195 >gi|304314163|ref|YP_003849310.1| conserved hypothetical protein containing a ferredoxin domain [Methanothermobacter marburgensis str. Marburg] gi|302587622|gb|ADL57997.1| conserved hypothetical protein containing a ferredoxin domain [Methanothermobacter marburgensis str. Marburg] Length = 366 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 23/99 (23%), Positives = 32/99 (32%), Gaps = 25/99 (25%) Query: 17 VGAFFLCLRYFFKAKTTINYPFEKGS-TSPRFRGEHALRRYPNGEERCIACKLCEAICPA 75 + F L+ TI E+ P RG C C C + CP Sbjct: 159 MSGFGGALKNLAMGCATIQGKIEQHECAKPVVRG------------ECTECGECVSECPV 206 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 A+T+ G I+ +CI C C + CP Sbjct: 207 DAMTLHDG------------VMIEYDRCIACMNCLDTCP 233 >gi|255323334|ref|ZP_05364468.1| ferredoxin-type protein NapH [Campylobacter showae RM3277] gi|255299626|gb|EET78909.1| ferredoxin-type protein NapH [Campylobacter showae RM3277] Length = 266 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 9/65 (13%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G+ AL R + C C C+ ICP + G + I +CI CG Sbjct: 193 GKFALIRVKHDAASCTNCMKCKLICPENQVLGIIGKQSGF---------ITSSECISCGR 243 Query: 109 CQEAC 113 C + C Sbjct: 244 CIDVC 248 >gi|224825579|ref|ZP_03698684.1| formate dehydrogenase, alpha subunit [Lutiella nitroferrum 2002] gi|224602500|gb|EEG08678.1| formate dehydrogenase, alpha subunit [Lutiella nitroferrum 2002] Length = 950 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 22/69 (31%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T SG +C+ CG C + Sbjct: 160 YFSYDPSKCIVCNRCVRACEETQGTFALTISGRGFESRVSPGQSEAFMESECVSCGACVD 219 Query: 112 ACPVDAIVE 120 ACP + E Sbjct: 220 ACPTATLQE 228 >gi|160943469|ref|ZP_02090702.1| hypothetical protein FAEPRAM212_00959 [Faecalibacterium prausnitzii M21/2] gi|158445148|gb|EDP22151.1| hypothetical protein FAEPRAM212_00959 [Faecalibacterium prausnitzii M21/2] gi|295103736|emb|CBL01280.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Faecalibacterium prausnitzii SL3/3] Length = 56 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 28/64 (43%), Gaps = 11/64 (17%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C+ C CE CP AITIE+G ++ CI CG C+ ACP Sbjct: 1 MAHKVSDACVGCGACEGACPVGAITIENGAAV-----------VNADSCIDCGACEGACP 49 Query: 115 VDAI 118 AI Sbjct: 50 TGAI 53 >gi|222056800|ref|YP_002539162.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp. FRC-32] gi|221566089|gb|ACM22061.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp. FRC-32] Length = 665 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 7/83 (8%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ C+ C C+ +CP AI E R G V ++ C CG CQ CP ++ Sbjct: 590 NEKNCVGCFYCKKVCPYGAIE-EKEIRDRQGNLIRVVAYVNPGVCGGCGTCQATCPSKSV 648 Query: 119 VEGPNFEFATETRQELYYDKERL 141 E T +++ E L Sbjct: 649 ------ELDGYTDEQIIAMIEAL 665 >gi|78221282|ref|YP_383029.1| sigma-54 dependent trancsriptional regulator [Geobacter metallireducens GS-15] gi|78192537|gb|ABB30304.1| sigma54 specific transcriptional regulator, Fis family [Geobacter metallireducens GS-15] Length = 756 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 30/91 (32%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E+C C C CP +AI + +I + +CI CG C CP A Sbjct: 9 EKCRKCYCCVRSCPVKAIKVAK-----------SYTEIIVDRCIGCGNCLSNCPQQA--- 54 Query: 121 GPNFEFATETRQELYYDK----ERLLNNGDR 147 ++ DK E+LL++G+ Sbjct: 55 ------------KMVADKVGVTEKLLSSGEE 73 >gi|89896715|ref|YP_520202.1| NADH dehydrogenase I chain G [Desulfitobacterium hafniense Y51] gi|89336163|dbj|BAE85758.1| NADH dehydrogenase I chain G [Desulfitobacterium hafniense Y51] Length = 378 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 33/87 (37%), Gaps = 7/87 (8%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYD 97 E+ LR +CI C C C Q ++ + ++ +D Sbjct: 154 ERRELPLDDSNPFILR----DPNKCILCGKCVRACEEIQGRSVLDFFKRGFDSQVGPAFD 209 Query: 98 IDMIK--CIYCGLCQEACPVDAIVEGP 122 + + C++CG C CPV A+VE Sbjct: 210 VPYSESECVFCGSCVSVCPVGALVEKK 236 >gi|148265659|ref|YP_001232365.1| molybdopterin oxidoreductase [Geobacter uraniireducens Rf4] gi|146399159|gb|ABQ27792.1| molybdopterin oxidoreductase [Geobacter uraniireducens Rf4] Length = 843 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 21/66 (31%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + RCI C+ C + D + C +CG C ACP Sbjct: 140 ESDPNRCILCEKCVKVDHEIVGCDAIAVVNRGEATIIDTIDGKPLNCEFCGNCVAACPTG 199 Query: 117 AIVEGP 122 ++ P Sbjct: 200 TLISKP 205 >gi|257467682|ref|ZP_05631778.1| putative [Fe] hydrogenase, electron-transfer subunit [Fusobacterium ulcerans ATCC 49185] gi|317061976|ref|ZP_07926461.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium ulcerans ATCC 49185] gi|313687652|gb|EFS24487.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium ulcerans ATCC 49185] Length = 594 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 10/62 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + ++CI C C +CP AIT R ID CI CG C E C Sbjct: 540 YSITDKCIGCTACARVCPIDAITGTVKHRHE----------IDNEICIKCGACYETCKFG 589 Query: 117 AI 118 AI Sbjct: 590 AI 591 Score = 35.1 bits (79), Expect = 3.1, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 16/42 (38%) Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RC G + + KCI C C CP+DAI Sbjct: 523 HVVDKRCAAGACQKLITYSITDKCIGCTACARVCPIDAITGT 564 >gi|237736261|ref|ZP_04566742.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium mortiferum ATCC 9817] gi|229421609|gb|EEO36656.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium mortiferum ATCC 9817] Length = 436 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 29/92 (31%), Gaps = 9/92 (9%) Query: 39 EKGSTSPRFRGEHALRRYPNGEE---RCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 E+ G AL + CI C C CP + R + Sbjct: 338 EEAPVIKGTSGLLALTKEETNPYKTRPCIGCGKCVEACPMG-LEPLMFARLASFEQWEQL 396 Query: 96 YDIDMIKCIYCGLCQEACP-----VDAIVEGP 122 +++ CI CG C CP +AI G Sbjct: 397 GQYNLMDCIECGSCAYICPANRPLTEAIKIGK 428 >gi|254168362|ref|ZP_04875207.1| radical SAM domain protein, putative [Aciduliprofundum boonei T469] gi|289595846|ref|YP_003482542.1| glycyl-radical enzyme activating protein family [Aciduliprofundum boonei T469] gi|197622643|gb|EDY35213.1| radical SAM domain protein, putative [Aciduliprofundum boonei T469] gi|289533633|gb|ADD07980.1| glycyl-radical enzyme activating protein family [Aciduliprofundum boonei T469] Length = 303 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 10/60 (16%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 +CI C C CP + I + H I+ KC YCG+C E CP A+ Sbjct: 53 YKCIHCYTCVHTCPYKLIYFDDFGAQH----------IERDKCTYCGICTENCPTSALEF 102 >gi|169351344|ref|ZP_02868282.1| hypothetical protein CLOSPI_02124 [Clostridium spiroforme DSM 1552] gi|169291566|gb|EDS73699.1| hypothetical protein CLOSPI_02124 [Clostridium spiroforme DSM 1552] Length = 254 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 27/73 (36%), Gaps = 14/73 (19%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + +P+ E C C +C CP AI + KCI C C + C Sbjct: 175 KFHPDTNETCEKCGICVEKCPVHAIDDDCKT--------------ISDKCISCFRCIKVC 220 Query: 114 PVDAIVEGPNFEF 126 P+ A + E+ Sbjct: 221 PLHAKNMDHDKEY 233 >gi|38569315|gb|AAR24337.1| reductive dehalogenase homologous protein RdhA7 [Dehalococcoides sp. FL2] Length = 482 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 29/76 (38%), Gaps = 9/76 (11%) Query: 60 EERCIACKLCEAICPAQ---------AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + C C +C CP + + P + + +D+ KC YCG+CQ Sbjct: 357 NKFCETCGICAEECPFGSLSKGGSSWDHFLSNEPLGNGNAPGFKGWRLDLHKCNYCGICQ 416 Query: 111 EACPVDAIVEGPNFEF 126 ACP +++ Sbjct: 417 SACPFNSVDNSWVHSL 432 >gi|19073919|gb|AAL84925.1|AF403179_2 o-chlorophenol reductive dehalogenase [Desulfitobacterium chlororespirans] Length = 456 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 24/125 (19%), Positives = 40/125 (32%), Gaps = 23/125 (18%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG-- 89 T + P E ++ C C C CP +AIT + +G Sbjct: 321 VTTDLPLEPDKP-----------IDFGLQDFCRICGKCAENCPGEAITTDRDHVEFNGYL 369 Query: 90 -----TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE--FATETRQELYYDKERLL 142 ++ + + CG C + CP ++ + E +R E+ LL Sbjct: 370 RWNSDMKKCAVFRTTNEEGSSCGRCMKVCPWNSKEDSWFHEAGLWIGSRGEMA---SSLL 426 Query: 143 NNGDR 147 N D Sbjct: 427 KNIDD 431 >gi|59714145|ref|YP_206920.1| pyruvate formate lyase activating enzyme [Vibrio fischeri ES114] gi|59482393|gb|AAW88032.1| predicted pyruvate formate lyase activating enzyme [Vibrio fischeri ES114] Length = 303 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 8/60 (13%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 P+ C C C A CP A+T + P + C C C + CP Sbjct: 51 HNPHTINHCDHCGDCVAHCPTNALTFDDSPSPKVIW--------NEPLCTQCDKCIDVCP 102 >gi|85860881|ref|YP_463083.1| heterodisulfide reductase subunit A [Syntrophus aciditrophicus SB] gi|85723972|gb|ABC78915.1| heterodisulfide reductase, subunit A [Syntrophus aciditrophicus SB] Length = 943 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 7/64 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 EE+C++C C +C AI PR R ++ + C G+C CP A+ Sbjct: 860 DEEKCVSCGACITVCSYGAIDFYESPRG-------RRARVNPVLCKGDGVCNTVCPTSAV 912 Query: 119 VEGP 122 Sbjct: 913 SLKH 916 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 10/19 (52%), Positives = 10/19 (52%) Query: 98 IDMIKCIYCGLCQEACPVD 116 I KC CG C E CPV Sbjct: 22 IIEDKCTGCGTCTEYCPVQ 40 >gi|85710648|ref|ZP_01041712.1| putative oxidoreductase, Fe-S subunit [Erythrobacter sp. NAP1] gi|85687826|gb|EAQ27831.1| putative oxidoreductase, Fe-S subunit [Erythrobacter sp. NAP1] Length = 808 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 25/82 (30%), Gaps = 12/82 (14%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100 S R + + C C+ C A CP AI I+ Sbjct: 653 LSRLDREAGKSFAHLHVPTSCRHCEHPHCMADCPPNAIQRGPDGEVS----------INA 702 Query: 101 IKCIYCGLCQEACPVDAIVEGP 122 CI CG C+ CP I P Sbjct: 703 ETCIGCGNCKSNCPYGVIRMDP 724 Score = 42.4 bits (98), Expect = 0.022, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 5/71 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL--CQEACPVD 116 E+ CI C CE C A E R ++ + C +C C CP + Sbjct: 632 DEKLCIGCDNCERAC---ADAHEGLSRLDREAGKSFAHLHVPTSCRHCEHPHCMADCPPN 688 Query: 117 AIVEGPNFEFA 127 AI GP+ E + Sbjct: 689 AIQRGPDGEVS 699 Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 28/113 (24%), Gaps = 28/113 (24%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP-------- 84 +P P E CI C C++ CP I ++ P Sbjct: 675 HCEHPHCMADCPPNAIQRGPDGEVSINAETCIGCGNCKSNCPYGVIRMDPVPPKKPSLLS 734 Query: 85 -----------RCHDGTRRTVRYDIDMIKCIYCGL---------CQEACPVDA 117 R++ K I C + C ACP A Sbjct: 735 WLFFGSGPGPGEASYSWRKSHGDPDLAKKAIKCDMCAGIDGGPACVRACPTGA 787 >gi|313157089|gb|EFR56519.1| ferredoxin [Alistipes sp. HGB5] Length = 361 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 27/86 (31%), Gaps = 11/86 (12%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 +P + + + CI C C+ +C AITI + Sbjct: 193 KWPKNRAVYVSCVSKDKGAVVMKACKAGCIGCGKCQKVCAFDAITIANNLAY-------- 244 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVE 120 ID KC C C CP AI Sbjct: 245 ---IDPQKCKLCRKCVNECPTGAIRL 267 Score = 38.5 bits (88), Expect = 0.27, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 20/60 (33%), Gaps = 9/60 (15%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C C AI + ++D KC CG C +ACP I Sbjct: 142 CLGFGDCVVSCAFDAIRMNPETGLP---------EVDPDKCTACGACVKACPKMIIELRK 192 Score = 38.5 bits (88), Expect = 0.34, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 27/90 (30%), Gaps = 8/90 (8%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD--------GTRRTVRY 96 R ++C AC C CP I + + + V Sbjct: 155 DAIRMNPETGLPEVDPDKCTACGACVKACPKMIIELRKKWPKNRAVYVSCVSKDKGAVVM 214 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 CI CG CQ+ C DAI N + Sbjct: 215 KACKAGCIGCGKCQKVCAFDAITIANNLAY 244 >gi|257468710|ref|ZP_05632804.1| sulfite reductase, subunit C [Fusobacterium ulcerans ATCC 49185] gi|317062965|ref|ZP_07927450.1| sulfite reductase [Fusobacterium ulcerans ATCC 49185] gi|313688641|gb|EFS25476.1| sulfite reductase [Fusobacterium ulcerans ATCC 49185] Length = 323 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 26/83 (31%), Gaps = 8/83 (9%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100 G G + +RC+ C+ C C + ++ S + Sbjct: 150 GKARMHDFGIIGMTEPQYDPDRCVNCQACVKGCKSLSVNALSVENYKIVR--------NT 201 Query: 101 IKCIYCGLCQEACPVDAIVEGPN 123 KCI CG+C CP A Sbjct: 202 EKCIGCGVCITKCPTRAFTRSKE 224 >gi|253583178|ref|ZP_04860376.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium varium ATCC 27725] gi|251833750|gb|EES62313.1| NADH:ubiquinone oxidoreductase subunit [Fusobacterium varium ATCC 27725] Length = 594 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 25/62 (40%), Gaps = 10/62 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + ++CI C C +CP AIT R I+ CI CG C E C Sbjct: 540 YSITDKCIGCTACARVCPIDAITGTVKHRHE----------INNEICIKCGACYETCKFG 589 Query: 117 AI 118 AI Sbjct: 590 AI 591 Score = 35.1 bits (79), Expect = 3.5, Method: Composition-based stats. Identities = 13/42 (30%), Positives = 16/42 (38%) Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RC G + + KCI C C CP+DAI Sbjct: 523 HVVDKRCAAGACQKLITYSITDKCIGCTACARVCPIDAITGT 564 >gi|238026514|ref|YP_002910745.1| hypothetical protein bglu_1g08580 [Burkholderia glumae BGR1] gi|237875708|gb|ACR28041.1| Hypothetical protein bglu_1g08580 [Burkholderia glumae BGR1] Length = 984 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 21/69 (30%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T +G +C+ CG C Sbjct: 188 YFSYDPSKCIVCNRCVRACEETQGTFALTIAGRGFESRVAAGESGTFMESECVSCGACVA 247 Query: 112 ACPVDAIVE 120 ACP + E Sbjct: 248 ACPTATLQE 256 >gi|225175901|ref|ZP_03729893.1| aldo/keto reductase [Dethiobacter alkaliphilus AHT 1] gi|225168489|gb|EEG77291.1| aldo/keto reductase [Dethiobacter alkaliphilus AHT 1] Length = 315 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 11/60 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C C C C AI++ I+ CI CG C+++CP I Sbjct: 266 KFCKGCGNCVESCEQGAISMVDEKAY-----------IEHSNCILCGYCRKSCPHSMIRI 314 Score = 34.7 bits (78), Expect = 4.3, Method: Composition-based stats. Identities = 8/21 (38%), Positives = 9/21 (42%) Query: 103 CIYCGLCQEACPVDAIVEGPN 123 C CG C E+C AI Sbjct: 268 CKGCGNCVESCEQGAISMVDE 288 >gi|148556137|ref|YP_001263719.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Sphingomonas wittichii RW1] gi|148501327|gb|ABQ69581.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Sphingomonas wittichii RW1] Length = 596 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 30/105 (28%), Gaps = 20/105 (19%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 + S + R + + CI C C ICP IT + R Sbjct: 479 DDPRSWAETQRCLNCDVQTVFTRTLCIECDACVDICPTDCITFTVNGDEAELRPRLKAPA 538 Query: 98 IDMIK--------------------CIYCGLCQEACPVDAIVEGP 122 + + C++CGLC E CP A Sbjct: 539 TNPDQALYVSSTLPTGRVLVKDEDVCLHCGLCAERCPTGAWDMQK 583 >gi|114777067|ref|ZP_01452087.1| electron transport complex protein RnfB [Mariprofundus ferrooxydans PV-1] gi|114552588|gb|EAU55048.1| electron transport complex protein RnfB [Mariprofundus ferrooxydans PV-1] Length = 194 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 22/60 (36%), Gaps = 10/60 (16%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C LC CP AI + + C C LC E CPVD I Sbjct: 111 DECIGCTLCIKACPVDAIIGAPKQ----------YHTVLADHCTGCELCVEPCPVDCIDM 160 Score = 35.1 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 13/25 (52%), Positives = 17/25 (68%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 + +CI C LC +ACPVDAI+ P Sbjct: 108 VREDECIGCTLCIKACPVDAIIGAP 132 >gi|126697867|ref|YP_001086764.1| putative iron-sulfur-binding protein [Clostridium difficile 630] gi|254973963|ref|ZP_05270435.1| putative iron-sulfur-binding protein [Clostridium difficile QCD-66c26] gi|255091349|ref|ZP_05320827.1| putative iron-sulfur-binding protein [Clostridium difficile CIP 107932] gi|255099467|ref|ZP_05328444.1| putative iron-sulfur-binding protein [Clostridium difficile QCD-63q42] gi|255305324|ref|ZP_05349496.1| putative iron-sulfur-binding protein [Clostridium difficile ATCC 43255] gi|255313007|ref|ZP_05354590.1| putative iron-sulfur-binding protein [Clostridium difficile QCD-76w55] gi|255515766|ref|ZP_05383442.1| putative iron-sulfur-binding protein [Clostridium difficile QCD-97b34] gi|255648859|ref|ZP_05395761.1| putative iron-sulfur-binding protein [Clostridium difficile QCD-37x79] gi|260682075|ref|YP_003213360.1| putative iron-sulfur-binding protein [Clostridium difficile CD196] gi|260685673|ref|YP_003216806.1| putative iron-sulfur-binding protein [Clostridium difficile R20291] gi|306518976|ref|ZP_07405323.1| putative iron-sulfur-binding protein [Clostridium difficile QCD-32g58] gi|115249304|emb|CAJ67117.1| putative iron-sulfur-binding protein [Clostridium difficile] gi|260208238|emb|CBA60619.1| putative iron-sulfur-binding protein [Clostridium difficile CD196] gi|260211689|emb|CBE01977.1| putative iron-sulfur-binding protein [Clostridium difficile R20291] Length = 357 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 11/63 (17%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++C+ C C CP +AI+I ID C CG C CP A+ Sbjct: 195 KKCVGCGKCVNSCPTKAISIVDKKAV-----------IDSDVCYGCGECPTVCPTRAVTI 243 Query: 121 GPN 123 Sbjct: 244 QWE 246 >gi|78356159|ref|YP_387608.1| heterodisulfide reductase, iron-sulfur-binding subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78218564|gb|ABB37913.1| putative adenylylsulfate reductase-associated electron transfer protein QmoB [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 756 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 21/68 (30%), Gaps = 10/68 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L RC CK C CP A+ + + +C CG C A Sbjct: 539 LSYPIFNFVRCTQCKRCTEECPFGALDDDEKGTPKP----------NFSRCRRCGTCMGA 588 Query: 113 CPVDAIVE 120 CP I Sbjct: 589 CPERVISF 596 >gi|159903840|ref|YP_001551184.1| ferredoxin [Prochlorococcus marinus str. MIT 9211] gi|159889016|gb|ABX09230.1| Ferredoxin [Prochlorococcus marinus str. MIT 9211] Length = 341 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 22/64 (34%), Gaps = 14/64 (21%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C+ C LC +CP AI +I CI CG C+ CP A Sbjct: 101 DDCVKCNLCIPVCPTDAI--------------PSTLEIVDSLCIGCGNCEAVCPPAASAI 146 Query: 121 GPNF 124 Sbjct: 147 TYRH 150 Score = 39.3 bits (90), Expect = 0.20, Method: Composition-based stats. Identities = 12/36 (33%), Positives = 13/36 (36%) Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 VR I C+ C LC CP DAI Sbjct: 86 VGMPGDHHVRKAIITDDCVKCNLCIPVCPTDAIPST 121 >gi|116750130|ref|YP_846817.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB] gi|116699194|gb|ABK18382.1| NADH dehydrogenase (quinone) [Syntrophobacter fumaroxidans MPOB] Length = 603 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 10/66 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L ++ EE C C LC CPA A++ E ID+ KCI C C A Sbjct: 547 LIKFEVNEENCQKCGLCFKACPAGAVSWEKKQTAK----------IDVSKCIKCRSCILA 596 Query: 113 CPVDAI 118 C +AI Sbjct: 597 CRFNAI 602 Score = 33.9 bits (76), Expect = 8.1, Method: Composition-based stats. Identities = 9/38 (23%), Positives = 17/38 (44%) Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++++++ C CGLC +ACP A+ Sbjct: 537 KECPARVCVDLIKFEVNEENCQKCGLCFKACPAGAVSW 574 >gi|307352732|ref|YP_003893783.1| pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta [Methanoplanus petrolearius DSM 11571] gi|307155965|gb|ADN35345.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Methanoplanus petrolearius DSM 11571] Length = 80 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 14/65 (21%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C C CE CP I+ E ++ID+ C CG+C + CP AI Sbjct: 29 DRELCNKCGNCERFCPDGTISKE--------------FEIDLEFCKGCGICADVCPKKAI 74 Query: 119 VEGPN 123 Sbjct: 75 KMVRE 79 >gi|295697039|ref|YP_003590277.1| Polysulphide reductase NrfD [Bacillus tusciae DSM 2912] gi|295412641|gb|ADG07133.1| Polysulphide reductase NrfD [Bacillus tusciae DSM 2912] Length = 519 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 23/73 (31%), Positives = 25/73 (34%), Gaps = 22/73 (30%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG---------LC 109 E CI CK C A CP AI I KC +C C Sbjct: 98 DREVCIGCKACMAACPYDAIYIHPDIHSA-------------EKCNFCAHRIDQGLEPAC 144 Query: 110 QEACPVDAIVEGP 122 CPV+AIV G Sbjct: 145 VAVCPVEAIVVGD 157 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 20/60 (33%), Gaps = 5/60 (8%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 C CE + P R D D CI C C ACP DAI P+ Sbjct: 68 TRCNQCE-----DPPCVAICPVSAMFQRPDGIVDFDREVCIGCKACMAACPYDAIYIHPD 122 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 32/103 (31%), Gaps = 17/103 (16%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA-----ITIESGPRCHDGTR 91 P E+ ++ CI C C C ++ + + G Sbjct: 8 PRERPPVK---------WGKVFNQDACIGCHACSTACKSEHLVPLGVNRTYVKQVEVGIY 58 Query: 92 RTVRYDIDMIKCIYCGL--CQEACPVDAIVEGPNFEFATETRQ 132 V + + +C C C CPV A+ + P+ R+ Sbjct: 59 PEVSREFQITRCNQCEDPPCVAICPVSAMFQRPD-GIVDFDRE 100 >gi|294102514|ref|YP_003554372.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Aminobacterium colombiense DSM 12261] gi|293617494|gb|ADE57648.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Aminobacterium colombiense DSM 12261] Length = 622 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 9/71 (12%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R + E+CI CK C + + + ID C+ CG Sbjct: 555 REKQDKIPMKVDPEKCIGCKFCINFFNCPGLVFDEAGKKAY---------IDERFCVSCG 605 Query: 108 LCQEACPVDAI 118 +C + CP AI Sbjct: 606 VCSKVCPHGAI 616 >gi|288559764|ref|YP_003423250.1| ATPase RIL [Methanobrevibacter ruminantium M1] gi|288542474|gb|ADC46358.1| ATPase RIL [Methanobrevibacter ruminantium M1] Length = 591 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 1/60 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +++C K C +C + +T + I C CG+C CP AI Sbjct: 8 DKDKCQP-KKCNTVCMHYCPGVRMDEDTIVIDEKTKKPLISEELCSGCGICTNRCPFGAI 66 >gi|222054720|ref|YP_002537082.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp. FRC-32] gi|221564009|gb|ACM19981.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp. FRC-32] Length = 55 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 11/64 (17%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + CI C C+ CP AI+ E R I CI CG C + CP Sbjct: 1 MAHKISDECINCGACDESCPVNAISEEGSKR-----------TISADTCIDCGACVDTCP 49 Query: 115 VDAI 118 V AI Sbjct: 50 VSAI 53 >gi|189219240|ref|YP_001939881.1| NAD-dependent formate dehydrogenase alpha subunit [Methylacidiphilum infernorum V4] gi|161075753|gb|ABX56624.1| formate dehydrogenase alpha subunit [Methylacidiphilum infernorum V4] gi|189186098|gb|ACD83283.1| NAD-dependent formate dehydrogenase alpha subunit [Methylacidiphilum infernorum V4] Length = 967 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 27/74 (36%), Gaps = 3/74 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV---RYDIDMIKCIYCGLCQE 111 + +CI C C C T+ R ++ +C+ CG C + Sbjct: 189 YFSFDPAKCIVCFRCVRACDEIQGTLALTARRRGFDSVITPGPTHEFFSSECVSCGACVK 248 Query: 112 ACPVDAIVEGPNFE 125 ACP A++E E Sbjct: 249 ACPTAALIENTVIE 262 >gi|159905810|ref|YP_001549472.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanococcus maripaludis C6] gi|159887303|gb|ABX02240.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus maripaludis C6] Length = 80 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 8/69 (11%) Query: 60 EERCIACKLCEAICPAQAITIE--------SGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 E+C C C CP A + S + V ++ C CG C E Sbjct: 8 PEKCHGCGNCVVACPVNAQDPDVYGGKGPSSDEKLIMRVENGVVSIVNGDLCGGCGACIE 67 Query: 112 ACPVDAIVE 120 ACPVDAI Sbjct: 68 ACPVDAIKL 76 Score = 33.9 bits (76), Expect = 7.7, Method: Composition-based stats. Identities = 10/25 (40%), Positives = 14/25 (56%) Query: 93 TVRYDIDMIKCIYCGLCQEACPVDA 117 + ++ KC CG C ACPV+A Sbjct: 1 MYKLEVYPEKCHGCGNCVVACPVNA 25 >gi|120602429|ref|YP_966829.1| hydrogenases, Fe-only [Desulfovibrio vulgaris DP4] gi|120562658|gb|ABM28402.1| hydrogenase, Fe-only [Desulfovibrio vulgaris DP4] Length = 606 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 9/85 (10%) Query: 59 GEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 +CI C C A+C A+ + + R R C+ CG C CP Sbjct: 148 DMGKCIRCLRCVAVCRNVQGVDALVVTGNGIGTEIGLRHNRSQ-SASDCVGCGQCTLVCP 206 Query: 115 VDAIVEGPNFEFATETRQELYYDKE 139 V A+ + E + YD E Sbjct: 207 VGALAGRDDVERVI----DYLYDPE 227 >gi|90412295|ref|ZP_01220300.1| pyruvate ferredoxin/flavodoxin oxidoreductase family protein [Photobacterium profundum 3TCK] gi|90326786|gb|EAS43179.1| pyruvate ferredoxin/flavodoxin oxidoreductase family protein [Photobacterium profundum 3TCK] Length = 1190 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 23/110 (20%), Positives = 31/110 (28%), Gaps = 29/110 (26%) Query: 58 NGEERCIACKLCEAICPAQ--------------AITIESGPRCHDGTRRTVRYDI--DMI 101 E CI C C ICP A + Y I Sbjct: 689 WDSELCIQCGNCSFICPHATIRAKLYRKDALDTAPENFKYADVAARGFPDMAYSIQVYAE 748 Query: 102 KCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 C+ C LC +ACP R+ L +++ D WE + Sbjct: 749 DCMGCTLCVDACPAHCA--------TDSNRKAL-----QMVPAVDEWEKQ 785 >gi|134300798|ref|YP_001114294.1| glycyl-radical activating family protein [Desulfotomaculum reducens MI-1] gi|134053498|gb|ABO51469.1| glycyl-radical enzyme activating protein family [Desulfotomaculum reducens MI-1] Length = 297 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 19/61 (31%), Gaps = 15/61 (24%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 +RCI C C C QAI I +C CG C CP A Sbjct: 52 PDRCIGCGDCVETCVNQAILPGG---------------IHKERCRRCGQCAAVCPTLARE 96 Query: 120 E 120 Sbjct: 97 M 97 Score = 35.5 bits (80), Expect = 2.4, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 19/71 (26%), Gaps = 8/71 (11%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 R G I K C C P +CI CG C E C Sbjct: 14 IRDGPGIRTTIFFKGCPLKCLWCHNPESQDPEPQLMF--------WPDRCIGCGDCVETC 65 Query: 114 PVDAIVEGPNF 124 AI+ G Sbjct: 66 VNQAILPGGIH 76 >gi|71274587|ref|ZP_00650875.1| Electron transport complex, RnfABCDGE type, B subunit [Xylella fastidiosa Dixon] gi|71898126|ref|ZP_00680312.1| Electron transport complex, RnfABCDGE type, B subunit [Xylella fastidiosa Ann-1] gi|170730849|ref|YP_001776282.1| ferredoxin [Xylella fastidiosa M12] gi|71164319|gb|EAO14033.1| Electron transport complex, RnfABCDGE type, B subunit [Xylella fastidiosa Dixon] gi|71732100|gb|EAO34156.1| Electron transport complex, RnfABCDGE type, B subunit [Xylella fastidiosa Ann-1] gi|167965642|gb|ACA12652.1| ferredoxin II [Xylella fastidiosa M12] Length = 139 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 23/66 (34%), Gaps = 10/66 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C C CP AI + + + C C LC ACPVD Sbjct: 83 WIVEADCIGCTKCIQACPVDAIIGGAK----------HMHTVIAALCTGCELCVPACPVD 132 Query: 117 AIVEGP 122 I P Sbjct: 133 CIELHP 138 >gi|304314087|ref|YP_003849234.1| pyruvate synthase, subunit D [Methanothermobacter marburgensis str. Marburg] gi|313104161|sp|P80903|PORD_METTM RecName: Full=Pyruvate synthase subunit porD; AltName: Full=Pyruvate oxidoreductase delta chain; Short=POR; AltName: Full=Pyruvic-ferredoxin oxidoreductase subunit delta gi|302587546|gb|ADL57921.1| pyruvate synthase, subunit D [Methanothermobacter marburgensis str. Marburg] Length = 81 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 32/85 (37%), Gaps = 14/85 (16%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E GST G + +++CI C C CP I E ++I Sbjct: 10 EPGSTRKNKTGSWRTFKPFLDKDKCIDCDNCILFCPEGCIDKE--------------HEI 55 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPN 123 D C CG+C E CPV AI Sbjct: 56 DYDYCKGCGICAEECPVKAIKMERE 80 >gi|288959752|ref|YP_003450092.1| formate dehydrogenase, alpha subunit [Azospirillum sp. B510] gi|288912060|dbj|BAI73548.1| formate dehydrogenase, alpha subunit [Azospirillum sp. B510] Length = 951 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 24/75 (32%), Gaps = 3/75 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T G + +C+ CG C + Sbjct: 159 YFTFDASKCIVCSRCVRACQETQGTFALTIDGRGFASSVSPGAKESFMDSECVSCGACVQ 218 Query: 112 ACPVDAIVEGPNFEF 126 ACP + E E+ Sbjct: 219 ACPTATLTEKSIIEY 233 >gi|242398680|ref|YP_002994104.1| ATPase, ParA/MinD family, containing ferredoxin domains [Thermococcus sibiricus MM 739] gi|242265073|gb|ACS89755.1| ATPase, ParA/MinD family, containing ferredoxin domains [Thermococcus sibiricus MM 739] Length = 295 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 11/58 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C +C CP I I Y ++ + C CG+C+ CPV+ Sbjct: 67 NSETCIKCGICAERCPYDCIKILDE-----------NYVVNELTCEGCGVCRLVCPVN 113 Score = 38.2 bits (87), Expect = 0.44, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 13/30 (43%) Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 I+ CI CG+C E CP D I Sbjct: 62 KVAKINSETCIKCGICAERCPYDCIKILDE 91 >gi|296109830|ref|YP_003616779.1| hypothetical protein Metin_1162 [Methanocaldococcus infernus ME] gi|295434644|gb|ADG13815.1| hypothetical protein Metin_1162 [Methanocaldococcus infernus ME] Length = 160 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%) Query: 63 CIACKLCEAICPAQAITIESGP--RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 CI C+ C +CP +AI + + + + I+ KC+YC C + CPV ++ Sbjct: 51 CIGCEGCANVCPTKAIEMVKVEPVKITENYVKDKVPKINYEKCVYCFYCHDFCPVFSVF 109 Score = 34.7 bits (78), Expect = 4.1, Method: Composition-based stats. Identities = 9/51 (17%), Positives = 17/51 (33%) Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + + +T + + + + + CI C C CP AI Sbjct: 20 LLGSGCVTDKEMRKKILEGKIELPKSVLEELCIGCEGCANVCPTKAIEMVK 70 >gi|224371439|ref|YP_002605603.1| putative ferredoxin [Desulfobacterium autotrophicum HRM2] gi|223694156|gb|ACN17439.1| putative ferredoxin [Desulfobacterium autotrophicum HRM2] Length = 122 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 12/87 (13%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 +E C C+ C C +AI++E ID +CI CG+C + CP Sbjct: 1 MPWINKELCTGCQTCIDECSVEAISMEEDIAF-----------IDEDECIRCGVCHDVCP 49 Query: 115 VDAIVEGPNFEFATETRQELYYDKERL 141 +A+ E + L + K+ L Sbjct: 50 ENAVRHDGE-RIPEEVQSNLIWAKKLL 75 >gi|224368798|ref|YP_002602959.1| FAD-dependent oxidoreductase (4Fe-4S ferredoxin cluster binding protein) [Desulfobacterium autotrophicum HRM2] gi|223691514|gb|ACN14797.1| FAD-dependent oxidoreductase (4Fe-4S ferredoxin cluster binding protein) [Desulfobacterium autotrophicum HRM2] Length = 689 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 20/63 (31%), Gaps = 10/63 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C C A+T+ +D KC CG C+ ACP I Sbjct: 134 CNIGCLGLGTCVKACLFGALTMGKD----------SLPKVDPEKCTGCGACERACPKHII 183 Query: 119 VEG 121 Sbjct: 184 RLT 186 >gi|170760276|ref|YP_001787576.1| iron-sulfur cluster-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|169407265|gb|ACA55676.1| iron-sulfur cluster-binding protein [Clostridium botulinum A3 str. Loch Maree] Length = 272 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 54/153 (35%), Gaps = 31/153 (20%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRY--PN 58 M I R ++ K ++ F T P+ K +G+ R P Sbjct: 144 MDIVREFAGEIYTKIINEKI---IKTAFVKGNT---PYRKYYMPKDEKGQPIDIRKVKPK 197 Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI CKLC +CP +I E + + CI C C + CPV+A Sbjct: 198 TNNNCIDCKLCANLCPMGSIDFEDVIKLN-------------GICIKCCACIKKCPVEA- 243 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 F+ + L + KE L N R+ E Sbjct: 244 ---KYFDDSGY----LKHKKE--LENNFRYRKE 267 >gi|119505633|ref|ZP_01627704.1| electron transport complex protein RnfC [marine gamma proteobacterium HTCC2080] gi|119458576|gb|EAW39680.1| electron transport complex protein RnfC [marine gamma proteobacterium HTCC2080] Length = 513 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 2/93 (2%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI C LC CPA + + + + + CI CG C CP I Sbjct: 367 DAQACIRCGLCAEACPASLLPQQLYWYARAKDQEQLE-RHHLADCIECGACSWVCPSH-I 424 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 + A +E +K R + DR+E+ Sbjct: 425 PLVQYYRAAKGMIKESKTEKIRSDRSRDRFEAR 457 >gi|119475816|ref|ZP_01616168.1| formate dehydrogenase, alpha subunit [marine gamma proteobacterium HTCC2143] gi|119450443|gb|EAW31677.1| formate dehydrogenase, alpha subunit [marine gamma proteobacterium HTCC2143] Length = 960 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 23/81 (28%), Gaps = 3/81 (3%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T G C+ CG C + Sbjct: 172 YFTFDASKCIVCSRCVRACEEVQGTFALTIDGKGFDSVVAAGQAQSFMESDCVSCGACIQ 231 Query: 112 ACPVDAIVEGPNFEFATETRQ 132 ACP ++E + R Sbjct: 232 ACPTSTLMENTVIDQGQPQRS 252 >gi|20093010|ref|NP_619085.1| coenzyme F420-dependent oxidoreductase [Methanosarcina acetivorans C2A] gi|19918329|gb|AAM07565.1| coenzyme F420-dependent oxidoreductase [Methanosarcina acetivorans C2A] Length = 345 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 5/76 (6%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 EK S + L+ C C C A+CPA A+ E+G ++ Y Sbjct: 3 EKKPISKSYLD---LKSKVWDTGLCSGCGACVAVCPADALYFETG--GDSTHPKSNNYCK 57 Query: 99 DMIKCIYCGLCQEACP 114 + + CG C E CP Sbjct: 58 AAVDDVPCGACYEVCP 73 Score = 34.3 bits (77), Expect = 6.0, Method: Composition-based stats. Identities = 8/18 (44%), Positives = 9/18 (50%) Query: 103 CIYCGLCQEACPVDAIVE 120 C CG C CP DA+ Sbjct: 24 CSGCGACVAVCPADALYF 41 >gi|126451593|ref|YP_001067208.1| formate dehydrogenase, alpha subunit [Burkholderia pseudomallei 1106a] gi|167846784|ref|ZP_02472292.1| formate dehydrogenase, alpha subunit [Burkholderia pseudomallei B7210] gi|242314359|ref|ZP_04813375.1| formate dehydrogenase, NAD-dependent, alpha subunit [Burkholderia pseudomallei 1106b] gi|126225235|gb|ABN88775.1| formate dehydrogenase, NAD-dependent, alpha subunit [Burkholderia pseudomallei 1106a] gi|242137598|gb|EES24000.1| formate dehydrogenase, NAD-dependent, alpha subunit [Burkholderia pseudomallei 1106b] Length = 984 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 25/85 (29%), Gaps = 10/85 (11%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T + + +C+ CG C Sbjct: 187 YFSYDPSKCIVCNRCVRACEETQGTFALTIASRGFESRVAASACEAFMDSECVSCGACVA 246 Query: 112 ACPVDAIVE-------GPNFEFATE 129 ACP ++E P E T Sbjct: 247 ACPTATLIEKSVARLGQPEHEIVTT 271 >gi|323702955|ref|ZP_08114612.1| FAD dependent oxidoreductase [Desulfotomaculum nigrificans DSM 574] gi|323532086|gb|EGB21968.1| FAD dependent oxidoreductase [Desulfotomaculum nigrificans DSM 574] Length = 1007 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 27/78 (34%), Gaps = 13/78 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR-------YDIDMIKCIY---- 105 E+CI C C CP + + G + Y ID KC+ Sbjct: 104 CVDIEKCIGCGACAEKCPVKVVDDFDGGLRKRKAIYKLYAQATPGAYAIDTTKCLKIKNP 163 Query: 106 --CGLCQEACPVDAIVEG 121 CG C EACP AI Sbjct: 164 KACGKCLEACPAGAINHQ 181 Score = 42.4 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 10/65 (15%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C +C C A + +T ++ + C CG C ACP A + Sbjct: 942 CKGCGICVEACAYGARVMNE---------QTKVAEVLDVLCQGCGACVAACPSGA-SQQK 991 Query: 123 NFEFA 127 FE A Sbjct: 992 GFEKA 996 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 3/32 (9%) Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 KCI CG C E CPV + +F+ R+ Sbjct: 108 EKCIGCGACAEKCPVKVV---DDFDGGLRKRK 136 >gi|317153653|ref|YP_004121701.1| cobyrinic acid a,c-diamide synthase [Desulfovibrio aespoeensis Aspo-2] gi|316943904|gb|ADU62955.1| cobyrinic acid a,c-diamide synthase [Desulfovibrio aespoeensis Aspo-2] Length = 294 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 31/102 (30%), Gaps = 18/102 (17%) Query: 27 FFKAKTTINYPFEKGSTSPRFRGEHALRRYPN-------GEERCIACKLCEAICPAQAIT 79 + T + F + R P E +C C++C +C +AIT Sbjct: 24 LWDRPVTAVDLDVEEPNLHLFLKPNIHRTDPAYIEIPEADESKCTLCRICSTLCQFKAIT 83 Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 + I C CG C CP A+ G Sbjct: 84 VMGDTLL-----------IFPEMCHGCGGCLAVCPEGALTPG 114 >gi|289193250|ref|YP_003459191.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus sp. FS406-22] gi|288939700|gb|ADC70455.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus sp. FS406-22] Length = 80 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 23/69 (33%), Gaps = 7/69 (10%) Query: 60 EERCIACKLCEAICPAQAITI-------ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 ERC C C CP A + + ++ C CG C E Sbjct: 8 PERCHGCGNCVVSCPVNAKDPSVWGGKGPETDKVVMIVEEGLVKVVNQELCGGCGACIEV 67 Query: 113 CPVDAIVEG 121 CPV+AI Sbjct: 68 CPVNAIELT 76 >gi|256830963|ref|YP_003159691.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfomicrobium baculatum DSM 4028] gi|256580139|gb|ACU91275.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfomicrobium baculatum DSM 4028] Length = 763 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 21/70 (30%), Gaps = 10/70 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L RC CK C CP A+ + + +C CG C A Sbjct: 546 LSFPKFNLVRCTQCKRCTEECPFGALDEDEKGNP----------MPNTSRCRRCGTCMGA 595 Query: 113 CPVDAIVEGP 122 CP I Sbjct: 596 CPERVIYFDN 605 >gi|225628328|ref|ZP_03786362.1| Ferredoxin-2 [Brucella ceti str. Cudo] gi|225616174|gb|EEH13222.1| Ferredoxin-2 [Brucella ceti str. Cudo] Length = 138 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 27/86 (31%), Gaps = 13/86 (15%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYD 97 + G + + CI CK C +CP Sbjct: 12 REPPPHPTGGHRSSTMTYVVTDNCIRCKYTDCVEVCPVDCFYEGENMLV----------- 60 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPN 123 I+ +CI CG+C+ CP +AI Sbjct: 61 INPDECIDCGVCEPECPAEAISPDTE 86 >gi|315230976|ref|YP_004071412.1| PUA-PAPS reductase like fusion [Thermococcus barophilus MP] gi|315184004|gb|ADT84189.1| PUA-PAPS reductase like fusion [Thermococcus barophilus MP] Length = 630 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 31/80 (38%), Gaps = 9/80 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E+G +P R C+ C +C C A++I R + + Sbjct: 551 EEGIFAPERREGIQAYYLIKRAYECVGCGVCVGRCKENALSINPKTR---------KIVV 601 Query: 99 DMIKCIYCGLCQEACPVDAI 118 D +CI+C C E CP+ I Sbjct: 602 DYGRCIHCRECMEVCPLLKI 621 >gi|154492926|ref|ZP_02032552.1| hypothetical protein PARMER_02568 [Parabacteroides merdae ATCC 43184] gi|154087231|gb|EDN86276.1| hypothetical protein PARMER_02568 [Parabacteroides merdae ATCC 43184] Length = 301 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 15/89 (16%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++CI C+ C CP QA+T+ DG +C CG+C E CP A+ Sbjct: 50 KKCIGCRTCVEACPEQALTLTPEGIVTDG-----------ARCTLCGICAEVCPAMAMEI 98 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWE 149 + + L + E+ + DR E Sbjct: 99 SG----TEYSAEALMKEIEKEIVFMDRSE 123 >gi|154150134|ref|YP_001403752.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Candidatus Methanoregula boonei 6A8] gi|153998686|gb|ABS55109.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Methanoregula boonei 6A8] Length = 390 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 24/88 (27%), Positives = 30/88 (34%), Gaps = 5/88 (5%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAIT-IESGPRCHDGTRR 92 N P E + F G+ C C ICPA AI P G Sbjct: 260 RNCPSEAITVEKIFEGDIEFHAEKCPGG----CSTCAEICPANAIYLPSEKPAAEMGHHI 315 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++ CI CG C ACP + I+ Sbjct: 316 EASIAVNKDYCILCGACVNACPGEDIII 343 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 34/67 (50%), Gaps = 7/67 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRC-------HDGTRRTVRYDIDMIKCIYCGLCQE 111 E +C C +C +CP A+T++ + + ++ +I+ KC+ C +C+E Sbjct: 73 DETKCSYCGVCVIMCPFNALTLKVDNQERLPILEKEGFPQYDMKAEINEEKCVRCTICEE 132 Query: 112 ACPVDAI 118 CP DAI Sbjct: 133 VCPRDAI 139 Score = 41.2 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDG-TRRTVRYDIDMIKCIYCGLCQEACPVDA 117 E C C +C CP +AI + G D+D KC YCG+C CP +A Sbjct: 32 NSETCTGCGICVDACPEEAIVLGLVGASRRGAINYATPIDVDETKCSYCGVCVIMCPFNA 91 Query: 118 IVE 120 + Sbjct: 92 LTL 94 Score = 38.9 bits (89), Expect = 0.23, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 3/68 (4%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 E +C ACK+C CP + IT+E + + I C C C CP +A Sbjct: 210 WDETKCDACKVCVEACPQECITVEREIVSD---KLDGKVSIVQDNCCTCTWCSRNCPSEA 266 Query: 118 IVEGPNFE 125 I FE Sbjct: 267 ITVEKIFE 274 Score = 37.0 bits (84), Expect = 0.83, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 2/68 (2%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 A + +E+C C +C A+CP AI ++ + + D KC C +C Sbjct: 165 KAKTTFTVDKEKCTTCGICGALCP--AIRVKHKEYTAEIGKVEGDVIWDETKCDACKVCV 222 Query: 111 EACPVDAI 118 EACP + I Sbjct: 223 EACPQECI 230 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 30/89 (33%), Gaps = 13/89 (14%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE-------------SGPR 85 E+ + + EE+C+ C +CE +CP AI Sbjct: 100 ERLPILEKEGFPQYDMKAEINEEKCVRCTICEEVCPRDAIDRNVPAYEGTYKGPVAGAKD 159 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + + +D KC CG+C CP Sbjct: 160 RQTALKAKTTFTVDKEKCTTCGICGALCP 188 Score = 34.3 bits (77), Expect = 5.0, Method: Composition-based stats. Identities = 11/21 (52%), Positives = 14/21 (66%) Query: 101 IKCIYCGLCQEACPVDAIVEG 121 C CG+C +ACP +AIV G Sbjct: 34 ETCTGCGICVDACPEEAIVLG 54 Score = 33.9 bits (76), Expect = 8.3, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 9/62 (14%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY-CGLCQEACPVDAI 118 ++ C C C CP++AIT+E + KC C C E CP +AI Sbjct: 249 QDNCCTCTWCSRNCPSEAITVEKIFEGDI--------EFHAEKCPGGCSTCAEICPANAI 300 Query: 119 VE 120 Sbjct: 301 YL 302 >gi|147676821|ref|YP_001211036.1| Fe-S-cluster [Pelotomaculum thermopropionicum SI] gi|146272918|dbj|BAF58667.1| Fe-S-cluster [Pelotomaculum thermopropionicum SI] Length = 153 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 24/60 (40%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +C C CE C + R + R + C+ CGLC + CPV+A+ Sbjct: 8 DPSKCTGCHRCEMWCSLTKYGEINPSRSNVYVIRREPAVDVPVVCVQCGLCVDVCPVEAL 67 Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 9/70 (12%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + C+ C LC +CP +A+ +T +D C CG C + CP Sbjct: 47 DVPVVCVQCGLCVDVCPVEALKRNG---------KTDAVVVDAESCTGCGTCVKVCPYGV 97 Query: 118 IVEGPNFEFA 127 + + A Sbjct: 98 LRIDEETDTA 107 >gi|16755057|gb|AAL26702.1| 68 kDa protein HP68 [Triticum aestivum] Length = 604 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 23/56 (41%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 K C C +++G C + + I CI CG+C + CP DAI Sbjct: 19 KKCRQECKKSCPVVKTGKLCIEVSPVAKLAFISEELCIGCGICVKKCPFDAIEIIN 74 >gi|57234100|ref|YP_181885.1| reductive dehalogenase, putative [Dehalococcoides ethenogenes 195] gi|57224548|gb|AAW39605.1| reductive dehalogenase, putative [Dehalococcoides ethenogenes 195] Length = 532 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 12/69 (17%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC----------IY 105 N E C CKLC +CP QAI+ + P+ +R R++ ++ KC + Sbjct: 390 DFNLAEFCSRCKLCAQVCPTQAISYDDKPKFEIYGQR--RFNTNLAKCRDGWNLGAGPMG 447 Query: 106 CGLCQEACP 114 C C CP Sbjct: 448 CRACISVCP 456 Score = 35.5 bits (80), Expect = 2.4, Method: Composition-based stats. Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 2/31 (6%) Query: 103 CIYCGLCQEACPVDAIVEG--PNFEFATETR 131 C C LC + CP AI P FE + R Sbjct: 397 CSRCKLCAQVCPTQAISYDDKPKFEIYGQRR 427 >gi|83590255|ref|YP_430264.1| cobyrinic acid a,c-diamide synthase [Moorella thermoacetica ATCC 39073] gi|83573169|gb|ABC19721.1| Cobyrinic acid a,c-diamide synthase [Moorella thermoacetica ATCC 39073] Length = 287 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 15/65 (23%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C C +C +AI ++ + C CG C+ ACP AI Sbjct: 64 DAGICTGCGRCLEVCRYEAI---------------KELRVNPVFCEGCGACKLACPSGAI 108 Query: 119 VEGPN 123 PN Sbjct: 109 TMEPN 113 >gi|54302329|ref|YP_132322.1| ferredoxin-type protein napG [Photobacterium profundum SS9] gi|46915751|emb|CAG22522.1| hypothetical ferredoxin-type protein napG [Photobacterium profundum SS9] Length = 201 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 30/93 (32%), Gaps = 2/93 (2%) Query: 27 FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC 86 FFK K T R AL+ + RCI C C ICP I Sbjct: 19 FFKTSLVKAAFKAKQFTQRYLRPPGALKE-EDFINRCIRCNQCAEICPNNCIKFFDSENG 77 Query: 87 HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + T CI C C + CP AI Sbjct: 78 LESHG-TPYITPREKACILCMKCGDVCPTGAIQ 109 >gi|45358809|ref|NP_988366.1| tungsten containing formylmethanofuran dehydrogenase subunit G [Methanococcus maripaludis S2] gi|45047675|emb|CAF30802.1| tungsten containing formylmethanofuran dehydrogenase, subunit G [Methanococcus maripaludis S2] Length = 80 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 8/69 (11%) Query: 60 EERCIACKLCEAICPAQAITIE--------SGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 E+C C C CP A + S + V ++ C CG C E Sbjct: 8 PEKCHGCGNCVVACPVNAQDPDVYGGKGPSSDEKLIMRVENGVVSIVNGDLCGGCGACIE 67 Query: 112 ACPVDAIVE 120 ACPVDAI Sbjct: 68 ACPVDAIKL 76 >gi|22299343|ref|NP_682590.1| iron-sulfur cluster binding protein [Thermosynechococcus elongatus BP-1] gi|22295526|dbj|BAC09352.1| tll1800 [Thermosynechococcus elongatus BP-1] Length = 134 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 32/103 (31%), Gaps = 8/103 (7%) Query: 29 KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88 K + T+ +P +R N +A + A I+ + Sbjct: 2 KKRVTLTFPRRTIQMPVTYRLAKDFNIAANIIRAQVAPNQVGKLVLELAGDIDQMEAALE 61 Query: 89 GTRRT--------VRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 R+ ID C++CGLC CP A+ P Sbjct: 62 WLRQQNIEVSLASREIVIDEQACVHCGLCTGVCPTQALTLHPE 104 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 9/66 (13%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 R E+ C+ C LC +CP QA+T+ T + +CI C C AC Sbjct: 75 REIVIDEQACVHCGLCTGVCPTQALTLHPE---------TFQLQFTRSRCIVCEQCVAAC 125 Query: 114 PVDAIV 119 P++AI Sbjct: 126 PMEAIH 131 >gi|326437811|gb|EGD83381.1| Ferredoxin:4Fe-4S ferredoxin [Salpingoeca sp. ATCC 50818] Length = 483 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 22/67 (32%), Gaps = 3/67 (4%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY---DIDMIKCIYCGLCQEACPV 115 ++C+ C C C G +I CI CG C CPV Sbjct: 227 DLDKCVLCTRCVRACQEIQGMSILGIASRGPYESVSPIMGKEIADTPCISCGACTAVCPV 286 Query: 116 DAIVEGP 122 AI E P Sbjct: 287 GAITEVP 293 >gi|320354226|ref|YP_004195565.1| dihydroorotate dehydrogenase electron transfer subunit [Desulfobulbus propionicus DSM 2032] gi|320122728|gb|ADW18274.1| Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulfur cluster binding domain protein [Desulfobulbus propionicus DSM 2032] Length = 834 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 18/64 (28%), Gaps = 3/64 (4%) Query: 55 RYPNGEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQE 111 C+ C C IC S R +D C +CG C + Sbjct: 165 FMDRDYNLCVLCGRCWRICEKIHGQPAISIINRGKWARIGTAFDTSHVHSGCTFCGACID 224 Query: 112 ACPV 115 CP Sbjct: 225 ICPT 228 >gi|317401939|gb|EFV82543.1| electron transport complex protein [Achromobacter xylosoxidans C54] Length = 148 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 24/70 (34%), Gaps = 10/70 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L E CI C LC CP AI + + + C C LC Sbjct: 76 LLVARIDEAHCIGCTLCIQACPVDAIVGANK----------HMHTVLPDWCTGCDLCVAP 125 Query: 113 CPVDAIVEGP 122 CPVD I P Sbjct: 126 CPVDCIEMVP 135 >gi|315187124|gb|EFU20881.1| Fe-S cluster domain protein [Spirochaeta thermophila DSM 6578] Length = 574 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 25/64 (39%), Gaps = 11/64 (17%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 R C C C CP +AI I SG R ++ C+YCG C E C Sbjct: 5 RLIYTVTSDCFDCYKCIRECPVKAIRISSG-----------RAEVVEELCLYCGHCVEVC 53 Query: 114 PVDA 117 P A Sbjct: 54 PSGA 57 >gi|304310134|ref|YP_003809732.1| predicted 4Fe-4S ferredoxin, iron-sulfur binding protein [gamma proteobacterium HdN1] gi|301795867|emb|CBL44066.1| predicted 4Fe-4S ferredoxin, iron-sulfur binding protein [gamma proteobacterium HdN1] Length = 86 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 2/65 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C C A CP + + S G + ++ C C C ACP DAI Sbjct: 23 NADACTGCGRCVAACPPHVLWLASAHPLGWGGKTAELFN--EEGCTGCAKCYTACPFDAI 80 Query: 119 VEGPN 123 Sbjct: 81 RMEKQ 85 >gi|239909238|ref|YP_002955980.1| glutamate synthase large subunit [Desulfovibrio magneticus RS-1] gi|239799105|dbj|BAH78094.1| glutamate synthase large subunit [Desulfovibrio magneticus RS-1] Length = 544 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 25/80 (31%), Gaps = 15/80 (18%) Query: 54 RRYPNGEERCIACKLCEAICPAQA------ITIESGPRCHDGTRRTVRYDIDMI------ 101 + + C C C ++CP A + T Y I Sbjct: 19 WQIEWDKNTCTLCGRCTSVCPVNAIELGVHRKRTVEALPGLLKKPTNSYSIYHGIRQRTD 78 Query: 102 ---KCIYCGLCQEACPVDAI 118 +CI C +C CP +AI Sbjct: 79 PAYRCIGCAMCNMVCPNNAI 98 Score = 38.2 bits (87), Expect = 0.44, Method: Composition-based stats. Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 2/28 (7%) Query: 96 YDIDMIK--CIYCGLCQEACPVDAIVEG 121 + I+ K C CG C CPV+AI G Sbjct: 19 WQIEWDKNTCTLCGRCTSVCPVNAIELG 46 >gi|269119184|ref|YP_003307361.1| sulfite reductase, subunit C [Sebaldella termitidis ATCC 33386] gi|268613062|gb|ACZ07430.1| sulfite reductase, subunit C [Sebaldella termitidis ATCC 33386] Length = 322 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 30/98 (30%), Gaps = 10/98 (10%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + G + + + +C++C +C C + R Sbjct: 145 CPNDCQKVRMHDFGIIGMTKPVLDDTKCVSCGMCVRKCQKLSTGAIKAENY--------R 196 Query: 96 YDIDMIKCIYCGLCQEACPVDAI--VEGPNFEFATETR 131 D +CI CG C CP A E F A R Sbjct: 197 PVRDHDRCIGCGECVLNCPTGAWTRDEKKYFRLAVMGR 234 >gi|257065425|ref|YP_003145097.1| indolepyruvate ferredoxin oxidreductase, alpha/beta subunit [Slackia heliotrinireducens DSM 20476] gi|256793078|gb|ACV23748.1| indolepyruvate ferredoxin oxidreductase, alpha/beta subunit [Slackia heliotrinireducens DSM 20476] Length = 637 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 21/56 (37%), Gaps = 11/56 (19%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI CK C AI + +D C CGLC + CP DAI Sbjct: 589 CIGCKRCITQIGCPAIGFDGEKAV-----------VDRSLCNGCGLCMQVCPFDAI 633 >gi|298530075|ref|ZP_07017477.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Desulfonatronospira thiodismutans ASO3-1] gi|298509449|gb|EFI33353.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Desulfonatronospira thiodismutans ASO3-1] Length = 94 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 10/63 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E+CI C +C+ CP I +S Y D+ C CG+C CP AI Sbjct: 40 DQEKCIKCGMCQVFCPEFCIHEDSEG----------FYPADLYYCKGCGICANECPKKAI 89 Query: 119 VEG 121 Sbjct: 90 TMT 92 Score = 33.5 bits (75), Expect = 9.5, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 21/58 (36%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 C + + + G +T+ D KCI CG+CQ CP I E Sbjct: 7 CAWEKLELGTAITEPGNAAQLKTGDWKTLHPVTDQEKCIKCGMCQVFCPEFCIHEDSE 64 >gi|225023236|ref|ZP_03712428.1| hypothetical protein EIKCOROL_00088 [Eikenella corrodens ATCC 23834] gi|224944060|gb|EEG25269.1| hypothetical protein EIKCOROL_00088 [Eikenella corrodens ATCC 23834] Length = 484 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 26/82 (31%), Gaps = 14/82 (17%) Query: 62 RCIACKLCEAICPA-----QAITIESGPRCHDGTRRTVRYDIDMIK-----CIYCGLCQE 111 +CI C C CP A + P ++ + C CG C E Sbjct: 318 QCIRCGACMNHCPVYTRIGGAAYGTTYPGPIGEILSPHLLGLEPTRDLPTACTMCGACVE 377 Query: 112 ACPVDAIVEGPNFEFATETRQE 133 CPV P E R+E Sbjct: 378 VCPVKI----PITEQMQRLREE 395 >gi|223041743|ref|ZP_03611936.1| electron transport complex protein RnfC [Actinobacillus minor 202] gi|223017427|gb|EEF15845.1| electron transport complex protein RnfC [Actinobacillus minor 202] Length = 571 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 34/105 (32%), Gaps = 3/105 (2%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E CI C C CP + + + + CI CG+C CP Sbjct: 385 PEDERACIRCSSCSDACPVG-LLPQQLYWFARSEDHEKSKEYHLDACIECGVCAYVCP-S 442 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVR-NIVTDS 160 I F E+ ++ R+E+ R N ++ Sbjct: 443 YIPLIQYFRQEKAKIAEIDEKAKKAEEAKQRFEAREARLNKEKEA 487 >gi|254468707|ref|ZP_05082113.1| formate dehydrogenase, alpha subunit [beta proteobacterium KB13] gi|207087517|gb|EDZ64800.1| formate dehydrogenase, alpha subunit [beta proteobacterium KB13] Length = 946 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 2/73 (2%) Query: 55 RYPNGEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + +CI C C C + R + + +C+ CG C +A Sbjct: 157 YFTFDPSKCIVCSRCVRACEETQGTFALTIDSRGFESKVSAGNKNFFDSECVSCGACVQA 216 Query: 113 CPVDAIVEGPNFE 125 CP ++E E Sbjct: 217 CPTATLMENSVIE 229 >gi|158634518|gb|ABW76111.1| pyruvate:ferredoxin oxidoreductase [Retortamonas sp. Vale] Length = 1194 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 23/89 (25%), Gaps = 22/89 (24%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAI-------------------TIESGPRCHD 88 RG + CI C C + CP I + Sbjct: 691 RGIAVKVPLWDE-STCIQCNQCVSACPHAVIRPYLVNAEEEEKLPGNVRSHLVPSKNMTA 749 Query: 89 GTRRTVRYDIDMI--KCIYCGLCQEACPV 115 + ++ I C CG+C CP Sbjct: 750 KEKGEFKFIIQPSPYDCTGCGVCVAVCPT 778 >gi|153806624|ref|ZP_01959292.1| hypothetical protein BACCAC_00894 [Bacteroides caccae ATCC 43185] gi|149131301|gb|EDM22507.1| hypothetical protein BACCAC_00894 [Bacteroides caccae ATCC 43185] Length = 300 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 9/65 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C C A C AI + ++D KC CG C +ACP I Sbjct: 138 CSYGCLGCGDCVAACQFDAIHMNPETGLP---------EVDEAKCTACGACVKACPKAII 188 Query: 119 VEGPN 123 P Sbjct: 189 EIRPQ 193 Score = 40.9 bits (94), Expect = 0.055, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 27/81 (33%), Gaps = 8/81 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------DMIKCIYCGLCQ 110 E +C AC C CP I I + + + CI CG C Sbjct: 169 DEAKCTACGACVKACPKAIIEIRPQGKKSRRVYVSCVNKDKGAVARKACTVSCIGCGKCV 228 Query: 111 EACPVDAIVEGPNFEFATETR 131 + CP +AI N + + Sbjct: 229 KTCPFEAITLENNLAYIDPDK 249 Score = 40.9 bits (94), Expect = 0.068, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 11/62 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C C CP +AIT+E+ ID KC C C E CP + I Sbjct: 217 CTVSCIGCGKCVKTCPFEAITLENNLAY-----------IDPDKCKSCRKCVEVCPQNTI 265 Query: 119 VE 120 +E Sbjct: 266 IE 267 >gi|146329455|ref|YP_001209464.1| electron transport complex protein, B subunit [Dichelobacter nodosus VCS1703A] gi|146232925|gb|ABQ13903.1| electron transport complex protein, B subunit [Dichelobacter nodosus VCS1703A] Length = 189 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 25/66 (37%), Gaps = 10/66 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E+ CI C C CP AI + + + +C C LC CPVD Sbjct: 109 WIVEDWCIGCTRCIQACPVDAIVGST----------QRMHTVLSAECTGCELCIAPCPVD 158 Query: 117 AIVEGP 122 IV P Sbjct: 159 CIVMKP 164 >gi|189424746|ref|YP_001951923.1| cobyrinic acid ac-diamide synthase [Geobacter lovleyi SZ] gi|189421005|gb|ACD95403.1| Cobyrinic acid ac-diamide synthase [Geobacter lovleyi SZ] Length = 293 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 22/64 (34%), Gaps = 11/64 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++RC C C +C + I R + C CG C CP AI Sbjct: 72 DQQRCNGCGACGELCQFRGIVAIG-----------TRALVFPELCHGCGGCALVCPTGAI 120 Query: 119 VEGP 122 E P Sbjct: 121 TERP 124 >gi|29346027|ref|NP_809530.1| ferredoxin [Bacteroides thetaiotaomicron VPI-5482] gi|253568565|ref|ZP_04845976.1| ferredoxin [Bacteroides sp. 1_1_6] gi|298385330|ref|ZP_06994888.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides sp. 1_1_14] gi|29337921|gb|AAO75724.1| Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfB [Bacteroides thetaiotaomicron VPI-5482] gi|251842638|gb|EES70718.1| ferredoxin [Bacteroides sp. 1_1_6] gi|298261471|gb|EFI04337.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides sp. 1_1_14] Length = 293 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 9/65 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C C A C AI + ++D KC CG C +ACP I Sbjct: 138 CSYGCLGCGDCVAACQFDAIHMNPETGLP---------EVDEAKCTACGACVKACPKAII 188 Query: 119 VEGPN 123 P Sbjct: 189 EIRPQ 193 Score = 40.9 bits (94), Expect = 0.059, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 29/81 (35%), Gaps = 8/81 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCH--------DGTRRTVRYDIDMIKCIYCGLCQ 110 E +C AC C CP I I + + + V + CI CG C Sbjct: 169 DEAKCTACGACVKACPKAIIEIRPQGKKSRRVYISCVNKDKGAVARKACTVSCIGCGKCV 228 Query: 111 EACPVDAIVEGPNFEFATETR 131 + CP +AI N + + Sbjct: 229 KTCPFEAITLENNLAYIDPNK 249 Score = 40.5 bits (93), Expect = 0.086, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 11/62 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C C CP +AIT+E+ ID KC C C E CP + I Sbjct: 217 CTVSCIGCGKCVKTCPFEAITLENNLAY-----------IDPNKCKSCRKCVEVCPQNTI 265 Query: 119 VE 120 +E Sbjct: 266 IE 267 >gi|323703148|ref|ZP_08114802.1| putative PAS/PAC sensor protein [Desulfotomaculum nigrificans DSM 574] gi|323531925|gb|EGB21810.1| putative PAS/PAC sensor protein [Desulfotomaculum nigrificans DSM 574] Length = 573 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 6/56 (10%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 +C C C IC +AI R + G + + C++CG C ACP A Sbjct: 9 KCRDCYRCVRICKLKAI------RINSGDKGKFHAQVMDELCVHCGQCILACPQKA 58 >gi|302338428|ref|YP_003803634.1| electron transport complex, RnfABCDGE type subunit beta [Spirochaeta smaragdinae DSM 11293] gi|301635613|gb|ADK81040.1| electron transport complex, RnfABCDGE type, B subunit [Spirochaeta smaragdinae DSM 11293] Length = 277 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 23/97 (23%), Positives = 34/97 (35%), Gaps = 10/97 (10%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 + K T +Y + + + C+ C +CP AI+ +SG R Sbjct: 107 HCRGTKETTSYLYAYRGLKDCNAVHALFQGDKECKYGCLGLGSCMKVCPVDAISYDSGGR 166 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 +D CI CG C EACP + P Sbjct: 167 VV----------VDKDACISCGNCIEACPTGVMQFVP 193 >gi|291228641|ref|XP_002734288.1| PREDICTED: ATP-binding cassette, sub-family E, member 1-like [Saccoglossus kowalevskii] Length = 488 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 21/56 (37%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 K C C + G C + T I CI CG+C + CP +AI Sbjct: 20 KRCRQECKKSCPVVRMGKLCIEVTSNDKIAYISEELCIGCGICAKKCPFEAISIIN 75 >gi|256828845|ref|YP_003157573.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfomicrobium baculatum DSM 4028] gi|256578021|gb|ACU89157.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Desulfomicrobium baculatum DSM 4028] Length = 1215 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 18/90 (20%), Positives = 28/90 (31%), Gaps = 18/90 (20%) Query: 51 HALRRYPNGEERCIACKLCEAIC--------------PAQAITIESGPRCHDGTRRTVRY 96 A+ CI C C +C A A + +++ Sbjct: 675 VAINVPEWIAANCIQCNQCSFVCPHAAIIPVLLTEEEMADAPETFETLDAIGKEFKGMKF 734 Query: 97 DIDMI--KCIYCGLCQEACPVD--AIVEGP 122 I + C+ CG C + CP A+V P Sbjct: 735 RIQVNALDCMGCGNCADICPAKNTALVMKP 764 >gi|237736266|ref|ZP_04566747.1| electron transport complex protein [Fusobacterium mortiferum ATCC 9817] gi|229421614|gb|EEO36661.1| electron transport complex protein [Fusobacterium mortiferum ATCC 9817] Length = 329 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 31/89 (34%), Gaps = 11/89 (12%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 K P K T E CI C +C CP AIT+E+ Sbjct: 185 KKVIAMLPQSKKVTVTCSSKEKGAAAKKACTTACIGCGICAKNCPVGAITVENNLA---- 240 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ID KCI CG+C CP AI Sbjct: 241 -------KIDPAKCISCGICATKCPTKAI 262 Score = 40.5 bits (93), Expect = 0.079, Method: Composition-based stats. Identities = 24/76 (31%), Positives = 32/76 (42%), Gaps = 14/76 (18%) Query: 52 ALRRYPNGEERCIAC----KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 A+ Y G++ C+ CE +CP AI + +D KCI CG Sbjct: 128 AMMLYAGGDKSCVYSCLGHGDCEKVCPVGAIKVNEKGIAE----------VDEDKCISCG 177 Query: 108 LCQEACPVDAIVEGPN 123 LCQ+ACP I P Sbjct: 178 LCQKACPKKVIAMLPQ 193 Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 10/60 (16%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E C C C CP AI + H + KC+ CG+C + C AI Sbjct: 276 ENCKGCTACARKCPVGAIEGAVKEKHH----------VITEKCVGCGICFDTCKFKAIKM 325 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 5/70 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQEAC 113 E++CI+C LC+ CP + I + + + CI CG+C + C Sbjct: 169 DEDKCISCGLCQKACPKKVIAMLPQSKKVTVTCSSKEKGAAAKKACTTACIGCGICAKNC 228 Query: 114 PVDAIVEGPN 123 PV AI N Sbjct: 229 PVGAITVENN 238 >gi|186470171|gb|AAY57574.2| HoxU [Lyngbya majuscula CCAP 1446/4] Length = 238 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 23/105 (21%), Positives = 36/105 (34%), Gaps = 10/105 (9%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDI 98 P+ + + ++ RCI C C +C A + R D T Sbjct: 126 PYIFPKREVDISHTQFGIDHNRCILCTRCVRVCDEIEGAHVWDVAGRGADAKVITGLNQP 185 Query: 99 D--MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERL 141 + C CG C +ACP +I T E+ +D +L Sbjct: 186 WGQVSACTSCGKCVDACPTGSIFRK------GSTAAEMIHDHSKL 224 Score = 34.3 bits (77), Expect = 5.4, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 25/81 (30%), Gaps = 8/81 (9%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIAC---KLCEAICPAQAITIESGPRCHDGTRR----- 92 +R + G C C CE A + ++ + +R Sbjct: 78 TPQLQDYRKMVVELLFSEGNHFCAVCVSNGNCELQDVAIEVGMDHTRFPYIFPKREVDIS 137 Query: 93 TVRYDIDMIKCIYCGLCQEAC 113 ++ ID +CI C C C Sbjct: 138 HTQFGIDHNRCILCTRCVRVC 158 >gi|125577451|gb|EAZ18673.1| hypothetical protein OsJ_34194 [Oryza sativa Japonica Group] Length = 628 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 24/56 (42%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 K C C +++G C + T + I CI CG+C + CP DAI Sbjct: 19 KKCRQECKKSCPVVKTGKLCIEVTPASKLAFISEELCIGCGICVKKCPFDAIEIIN 74 >gi|150398827|ref|YP_001322594.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanococcus vannielii SB] gi|150011530|gb|ABR53982.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus vannielii SB] Length = 654 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 29/81 (35%), Gaps = 7/81 (8%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAIT-------IESGPRCHDGTRRTVRYDI 98 F+ + + EE+C C CE +CP + +Y I Sbjct: 229 NFKVKIEKKPRYLSEEKCTGCGSCEEVCPITVPNEFDMGIGMRKAIYKPFPQAVPAKYTI 288 Query: 99 DMIKCIYCGLCQEACPVDAIV 119 D CI CGLC + C AI Sbjct: 289 DKESCIDCGLCAKVCGPQAIN 309 Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 21/64 (32%), Gaps = 7/64 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ C AC +C CP A ++ C CG C CP A+ Sbjct: 580 DEDVCGACGICVQQCPYGAPRFVEKD-------GKQALEVLSALCKGCGTCAGGCPSGAL 632 Query: 119 VEGP 122 + Sbjct: 633 EQSH 636 Score = 35.1 bits (79), Expect = 3.0, Method: Composition-based stats. Identities = 10/27 (37%), Positives = 12/27 (44%), Gaps = 3/27 (11%) Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEF 126 KC CG C+E CP I F+ Sbjct: 243 EEKCTGCGSCEEVCP---ITVPNEFDM 266 >gi|56412594|ref|YP_149669.1| polyferredoxin [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197361529|ref|YP_002141165.1| polyferredoxin [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56126851|gb|AAV76357.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197093005|emb|CAR58438.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 287 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 20/73 (27%), Gaps = 11/73 (15%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C C C CP I + I C CG C CP A+ Sbjct: 190 PQECRMCGACWRSCPENVIQFDDD-----------TLTIAAAHCTGCGGCAAVCPHQALR 238 Query: 120 EGPNFEFATETRQ 132 + E A Sbjct: 239 LRFDVEPAPTRHS 251 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 11/50 (22%) Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C +CPAQA ++ G ID +CI CG C CPVDAI Sbjct: 29 CADVCPAQAFSLAQGQVS-----------IDTTRCIACGDCLFVCPVDAI 67 >gi|6685747|sp|P56815|PORD_METTH RecName: Full=Pyruvate synthase subunit porD; AltName: Full=Pyruvate oxidoreductase delta chain; Short=POR; AltName: Full=Pyruvic-ferredoxin oxidoreductase subunit delta Length = 81 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 14/65 (21%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +++CI C C CP I E ++ID C CG+C E CPV AI Sbjct: 30 DKDKCIDCDNCILFCPEGCINRE--------------HEIDYDYCKGCGICAEKCPVKAI 75 Query: 119 VEGPN 123 Sbjct: 76 KMERE 80 >gi|46580181|ref|YP_010989.1| [Fe] hydrogenase gamma [Desulfovibrio vulgaris str. Hildenborough] gi|40828|emb|CAA40970.1| Hyd gamma [Desulfovibrio vulgaris str. Hildenborough] gi|46449598|gb|AAS96248.1| [Fe] hydrogenase gamma [Desulfovibrio vulgaris str. Hildenborough] gi|311233828|gb|ADP86682.1| hydrogenase, Fe-only [Desulfovibrio vulgaris RCH1] gi|226889|prf||1610171A hydrogenase gamma Length = 606 Score = 43.9 bits (102), Expect = 0.007, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 9/85 (10%) Query: 59 GEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 +CI C C A+C A+ + + R R C+ CG C CP Sbjct: 148 DMGKCIRCLRCVAVCRNVQGVDALVVTGNGIGTEIGLRHNRSQ-SASDCVGCGQCTLVCP 206 Query: 115 VDAIVEGPNFEFATETRQELYYDKE 139 V A+ + E + YD E Sbjct: 207 VGALAGRDDVERVI----DYLYDPE 227 >gi|332560814|ref|ZP_08415132.1| 4Fe-4S ferredoxin, RnfC [Rhodobacter sphaeroides WS8N] gi|332274612|gb|EGJ19928.1| 4Fe-4S ferredoxin, RnfC [Rhodobacter sphaeroides WS8N] Length = 517 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 30/99 (30%), Gaps = 13/99 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C C CP E R I ++ CI CG C CP + Sbjct: 377 DTMPCIRCGRCAQACPVGLTPFELNARIQSEDLEGAG-RIGLLDCITCGCCSFTCPSNLP 435 Query: 119 VEGPNFEFATETRQELYYDKERL-LNNGDRWESEIVRNI 156 + Y K +L G R + E + + Sbjct: 436 LVQTIH-----------YAKGKLAEAEGRRHQQEETKRL 463 >gi|329962551|ref|ZP_08300532.1| 4Fe-4S binding domain protein [Bacteroides fluxus YIT 12057] gi|328529807|gb|EGF56699.1| 4Fe-4S binding domain protein [Bacteroides fluxus YIT 12057] Length = 373 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 21/55 (38%), Gaps = 10/55 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 CI C +C C A+ + + + ID +KC+ CG C C Sbjct: 192 DTGHCIGCNICVKHCAHDAVHLNAQRKAE----------IDYVKCVGCGQCVALC 236 >gi|322515041|ref|ZP_08068049.1| electron transport complex protein RnfC [Actinobacillus ureae ATCC 25976] gi|322118921|gb|EFX91098.1| electron transport complex protein RnfC [Actinobacillus ureae ATCC 25976] Length = 604 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 20/58 (34%), Gaps = 1/58 (1%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 P E CI C C CP + + + + CI CG+C CP Sbjct: 379 PEPERSCIRCSSCSDACPVGLLPQQLY-WFSRSDDHDKSKEYHLDACIECGVCAYVCP 435 >gi|296387990|ref|ZP_06877465.1| electron transport complex protein RnfB [Pseudomonas aeruginosa PAb1] Length = 188 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 10/67 (14%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 R E CI C C CP AI + + + + +C C LC E C Sbjct: 104 RVAYIREAECIGCTKCIQACPVDAIVGAA----------RLMHTVIADECTGCDLCLEPC 153 Query: 114 PVDAIVE 120 PVD I Sbjct: 154 PVDCIEM 160 Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 16/38 (42%) Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E P I +CI C C +ACPVDAI Sbjct: 91 EPEPLDAAEETPPRVAYIREAECIGCTKCIQACPVDAI 128 >gi|288931410|ref|YP_003435470.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Ferroglobus placidus DSM 10642] gi|288893658|gb|ADC65195.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Ferroglobus placidus DSM 10642] Length = 623 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 20/67 (29%), Gaps = 11/67 (16%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 R E C C C + AI + ID C CG C + Sbjct: 563 VKIRPFEVTEACTLCLRCVSDFTCPAIIYDGEKV-----------WIDEALCAGCGFCVQ 611 Query: 112 ACPVDAI 118 CP AI Sbjct: 612 VCPEKAI 618 >gi|322417714|ref|YP_004196937.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Geobacter sp. M18] gi|320124101|gb|ADW11661.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Geobacter sp. M18] Length = 1182 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 31/106 (29%), Gaps = 24/106 (22%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------QAITIESGP------- 84 TS + A+ E+ CI C +C +CP A + + P Sbjct: 673 PTGTSQYEKRNIAVDIPVWDEKICIQCGICSFVCPHATIRMKIYDADKLSAAPETFKSVD 732 Query: 85 -RCHDGTRRTVRYDIDMIKCIYCGLCQEACPV--------DAIVEG 121 R ++ + C CG C CP AI Sbjct: 733 ARGNEYKGMKCTVQVAPEDCTGCGACVANCPAKSKEDPKHKAINMT 778 Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats. Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 13/52 (25%) Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVR 154 CI CG+C CP I YD ++L + ++S R Sbjct: 696 CIQCGICSFVCPHATIRMK-------------IYDADKLSAAPETFKSVDAR 734 >gi|251771840|gb|EES52414.1| Pyridine nucleotide-disulphide oxidoreductase [Leptospirillum ferrodiazotrophum] Length = 615 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 19/112 (16%), Positives = 32/112 (28%), Gaps = 28/112 (25%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE-------SGPRCHDGTR 91 E+ + + R +C+ C C +CP A+ + + Sbjct: 494 EEQARTQASRCLTCHVNPIFEGHKCVLCGGCVDVCPEYALKMVPLTDVDLEHGKVEPLVE 553 Query: 92 RTVRYDIDMI---------------------KCIYCGLCQEACPVDAIVEGP 122 +I + +CI CGLC + CP AI Sbjct: 554 AFTETEITLDHIEEPVVQTLSQSTAMIWDGMRCIRCGLCAKRCPTGAIAMEH 605 >gi|237654368|ref|YP_002890682.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thauera sp. MZ1T] gi|237625615|gb|ACR02305.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thauera sp. MZ1T] Length = 710 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 9/60 (15%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C C CPA A+ S R + C+ CGLC+ +CP AI P Sbjct: 574 CTLCMSCTGACPAGALRAASDAY---------RLEFVEKNCLQCGLCEASCPESAITLEP 624 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 11/29 (37%), Positives = 14/29 (48%) Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 T ID+ C+ C C +ACP AI Sbjct: 198 WTQHNPIDLELCVRCNACVKACPEGAIGW 226 >gi|242280554|ref|YP_002992683.1| nitroreductase [Desulfovibrio salexigens DSM 2638] gi|242123448|gb|ACS81144.1| nitroreductase [Desulfovibrio salexigens DSM 2638] Length = 287 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 30/83 (36%), Gaps = 11/83 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C +LC CP +T+E + + Y CI CG C CP AI Sbjct: 7 DTELCKRDELCVHECPLMVLTVEKKGQVPVVHPKKTNY------CINCGHCMAICPTGAI 60 Query: 119 VEGPNFEFATETRQELYYDKERL 141 A E + + KE L Sbjct: 61 TLS-----AFEGQAAEPFSKEDL 78 >gi|212550805|ref|YP_002309122.1| pyruvate-flavodoxin oxidoreductase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549043|dbj|BAG83711.1| putative pyruvate-flavodoxin oxidoreductase [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 1181 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 45/135 (33%), Gaps = 34/135 (25%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR------- 91 E+G+ + RG + CI C C +CP +I Sbjct: 670 EQGTAAYEKRGVGTHVPTWI-LDNCIQCNQCSYVCPHASIRPFILDESEQSEAPVDLDTL 728 Query: 92 ---------RTVRYDIDMIKCIYCGLCQEACPVD----AIVEGP---------NFEFATE 129 R ++++ C+ CG C + CP + A+ P N++F TE Sbjct: 729 KAVGKKFEGMNFRMQVNVLDCLGCGNCVDVCPGNKNGKALQMSPIENEWNNQSNWDFCTE 788 Query: 130 TRQELYYDKERLLNN 144 K+ L++ Sbjct: 789 K----VKTKQHLVDV 799 >gi|195393212|ref|XP_002055248.1| GJ18897 [Drosophila virilis] gi|194149758|gb|EDW65449.1| GJ18897 [Drosophila virilis] Length = 1031 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 18/65 (27%), Gaps = 8/65 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP-VDA 117 ++ CI C C C + C C LC CP +D Sbjct: 949 NDDMCINCGKCYMTCA-------DSGYQAIEFDKDTHLPHVNDDCTGCTLCVSVCPIIDC 1001 Query: 118 IVEGP 122 I P Sbjct: 1002 IRMEP 1006 >gi|154248935|ref|YP_001409760.1| hydrogenase, Fe-only [Fervidobacterium nodosum Rt17-B1] gi|154152871|gb|ABS60103.1| hydrogenase, Fe-only [Fervidobacterium nodosum Rt17-B1] Length = 586 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 3/67 (4%) Query: 61 ERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDI--DMIKCIYCGLCQEACPVDA 117 +CI C+ C +C Q + I S + + I CI CG C CPV A Sbjct: 144 SKCIKCQRCVRVCSEIQGMNIYSMVDRGYESLPETEFGIPVYETNCISCGQCAYLCPVGA 203 Query: 118 IVEGPNF 124 I E P++ Sbjct: 204 IYEAPDW 210 Score = 33.5 bits (75), Expect = 9.3, Method: Composition-based stats. Identities = 18/103 (17%), Positives = 30/103 (29%), Gaps = 11/103 (10%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E+ ++ +F + +P+ C A CE + P DI Sbjct: 77 ERVESAVKFNLSLIMANHPHECMYCEADGRCELQKLV--HMYDIKPIFGVNVDMDKEIDI 134 Query: 99 -------DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134 ++ KCI C C C I + + L Sbjct: 135 SSPSINRELSKCIKCQRCVRVC--SEIQGMNIYSMVDRGYESL 175 >gi|95928306|ref|ZP_01311054.1| Pyruvate:ferredoxin (flavodoxin) oxidoreductase [Desulfuromonas acetoxidans DSM 684] gi|95135577|gb|EAT17228.1| Pyruvate:ferredoxin (flavodoxin) oxidoreductase [Desulfuromonas acetoxidans DSM 684] Length = 1190 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 16/96 (16%), Positives = 25/96 (26%), Gaps = 24/96 (25%) Query: 50 EHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVR 95 A+ ++ CI C +C +CP A ++ Sbjct: 681 NIAVNIPVWEQDLCIQCGICSFVCPHASIRMKAYDPAELDGAPETFKSVDAKGKEMAGMK 740 Query: 96 Y--DIDMIKCIYCGLCQEACP--------VDAIVEG 121 + + C CG C CP AI Sbjct: 741 FTLQVAPEDCTGCGACVHNCPAKSKEEEGKKAINMT 776 >gi|327535031|gb|AEA93865.1| NAD-dependent formate dehydrogenase, alpha subunit [Enterococcus faecalis OG1RF] Length = 906 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 3/92 (3%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV 94 F +G P + + + + E+CI C+ C +C + + + Sbjct: 133 FTEGKRMPCHQEDTSNPFFSYDPEKCIMCRRCARVCQLRQGRDVLSIANRGFETKMMPSY 192 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 D C CG C +CP A+ E+ Sbjct: 193 GQAFDQSICESCGNCVSSCPTGALTAKDMKEY 224 >gi|317502269|ref|ZP_07960441.1| 4Fe-4S ferredoxin [Lachnospiraceae bacterium 8_1_57FAA] gi|331089012|ref|ZP_08337919.1| ferredoxin [Lachnospiraceae bacterium 3_1_46FAA] gi|316896330|gb|EFV18429.1| 4Fe-4S ferredoxin [Lachnospiraceae bacterium 8_1_57FAA] gi|330406464|gb|EGG85977.1| ferredoxin [Lachnospiraceae bacterium 3_1_46FAA] Length = 56 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 11/64 (17%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C++C CEA CP AI+ G Y+ID C+ CG C+ ACP Sbjct: 1 MAHVISDECVSCGSCEAECPVGAISEGDGK-----------YEIDADACVDCGACEAACP 49 Query: 115 VDAI 118 AI Sbjct: 50 TGAI 53 >gi|282164659|ref|YP_003357044.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit A/F420-non-reducing hydrogenase iron-sulfur subunit D [Methanocella paludicola SANAE] gi|282156973|dbj|BAI62061.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit A/F420-non-reducing hydrogenase iron-sulfur subunit D [Methanocella paludicola SANAE] Length = 786 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 25/99 (25%), Positives = 35/99 (35%), Gaps = 18/99 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+C +C C +CP A R ID + CI G C CP AI Sbjct: 574 DHEKCTSCGACVKLCPYGAAYTNG------------RITIDPLSCIGLGGCILRCPEHAI 621 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIV 157 + A R + +L +G R + + NI Sbjct: 622 SLPSCSDEALYAR------IDGMLASGPRMIAFLDENIA 654 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 24/72 (33%), Gaps = 7/72 (9%) Query: 57 PNGEERCIACKLCEAICP------AQAI-TIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 ++C++C C CP A+ + Y ID C CG C Sbjct: 239 HIDPKKCMSCGKCAQACPVTVKDEWNAMLSKRKAAYRPFPQAVPSSYTIDDKACKKCGSC 298 Query: 110 QEACPVDAIVEG 121 +AC AI Sbjct: 299 VKACGAGAIDLS 310 >gi|282901426|ref|ZP_06309351.1| ferredoxin (flavodoxin) oxidoreductase [Cylindrospermopsis raciborskii CS-505] gi|281193705|gb|EFA68677.1| ferredoxin (flavodoxin) oxidoreductase [Cylindrospermopsis raciborskii CS-505] Length = 1185 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 21/123 (17%), Positives = 35/123 (28%), Gaps = 30/123 (24%) Query: 58 NGEERCIACKLCEAICPAQ----------------AITIESGPRCHDGTRRTVRYDIDMI 101 E C+ C C +CP A + + + I Sbjct: 687 WDENVCVQCGKCVMVCPHATIRAKTYAPHQLLNAPATFKSTDAKDKSFAGQKFTIQIAPE 746 Query: 102 KCIYCGLCQEACP--------VDAIVEGPNFEFATETRQ--ELYYDKERLLNNGDRWESE 151 C C LC CP A+ P ++ E + + L N DR + + Sbjct: 747 DCTGCSLCVNICPAKNKAEPTKKALNMHPQIPLRALEKENWEFFLN----LPNPDRRKLK 802 Query: 152 IVR 154 + + Sbjct: 803 LNQ 805 >gi|257457555|ref|ZP_05622722.1| 4Fe-4S binding domain protein [Treponema vincentii ATCC 35580] gi|257444941|gb|EEV20017.1| 4Fe-4S binding domain protein [Treponema vincentii ATCC 35580] Length = 56 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 11/58 (18%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C+ C CE CP AI+ +G R ID CI CG C CP +AI E Sbjct: 9 CVNCGACEGECPVGAISEANGARV-----------IDADACISCGACAGVCPTEAISE 55 >gi|168334990|ref|ZP_02693106.1| pyruvate-flavodoxin oxidoreductase [Epulopiscium sp. 'N.t. morphotype B'] Length = 1037 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 29/105 (27%), Gaps = 23/105 (21%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITI------ESGPRCHDGTRRTV---------- 94 A+ CI C C ICP I E + Sbjct: 676 IAIDVPEWNVNNCIQCNQCAFICPHACIRPVLVNADEKAAAPETFETKKAIGKVFEGLEY 735 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139 R + + C C C + CP N A + +L +KE Sbjct: 736 RIQVSPLDCTGCSNCVDICP------SKNKALAMKHIGDLV-EKE 773 >gi|150399888|ref|YP_001323655.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta [Methanococcus vannielii SB] gi|150012591|gb|ABR55043.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein [Methanococcus vannielii SB] Length = 375 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 7/108 (6%) Query: 29 KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG----- 83 K+ T+ ++K + Y + +C +CK +C + + Sbjct: 249 KSMITLGKKYKKEQLDESYPTTDKWNEYWSRCIKCYSCKDVCPVCFCKECALTEDYLDKG 308 Query: 84 -PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 + + +R CI CG C++ CPV+ I + A + Sbjct: 309 TIPPNPVMFQGIRLSHMSFSCINCGQCEDVCPVE-IPLSSIYHRAQQK 355 >gi|134045265|ref|YP_001096751.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanococcus maripaludis C5] gi|132662890|gb|ABO34536.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Methanococcus maripaludis C5] Length = 132 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 10/62 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E+CI C C CP AI+++ + +D +CI C C + CPV+AI Sbjct: 78 DDEKCIDCGACVVHCPVGAISVDDEFKIL----------LDEDECIGCKNCAKICPVNAI 127 Query: 119 VE 120 Sbjct: 128 KI 129 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 12/24 (50%), Positives = 12/24 (50%) Query: 101 IKCIYCGLCQEACPVDAIVEGPNF 124 KCI CG C CPV AI F Sbjct: 80 EKCIDCGACVVHCPVGAISVDDEF 103 >gi|21227542|ref|NP_633464.1| hypothetical protein MM_1440 [Methanosarcina mazei Go1] gi|20905922|gb|AAM31136.1| conserved protein [Methanosarcina mazei Go1] Length = 540 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 23/62 (37%), Gaps = 5/62 (8%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E+CI C+ C CP A+ RT +YD C C CP +AI Sbjct: 478 EKCIYCQKCMEECPENAL-----EITETDGIRTAKYDSQKCLGTSCRRCVSVCPENAIDI 532 Query: 121 GP 122 Sbjct: 533 TK 534 Score = 37.0 bits (84), Expect = 0.81, Method: Composition-based stats. Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%) Query: 97 DIDMIKCIYCGLCQEACPVDA--IVEGPNFEFATET 130 ++ + KCIYC C E CP +A I E A Sbjct: 474 EVPVEKCIYCQKCMEECPENALEITETDGIRTAKYD 509 >gi|20089624|ref|NP_615699.1| hypothetical protein MA0739 [Methanosarcina acetivorans C2A] gi|19914545|gb|AAM04179.1| hypothetical protein (multi-domain) [Methanosarcina acetivorans C2A] Length = 219 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 12/72 (16%) Query: 47 FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 F G E+C AC +C+ +CP++AI+ + Y ID C+ C Sbjct: 154 FGGAKVAEPGYKITEKCTACGICKELCPSRAIS------------KGEIYKIDGSICLEC 201 Query: 107 GLCQEACPVDAI 118 G C E CP DAI Sbjct: 202 GRCAENCPYDAI 213 Score = 33.9 bits (76), Expect = 7.1, Method: Composition-based stats. Identities = 11/24 (45%), Positives = 15/24 (62%) Query: 101 IKCIYCGLCQEACPVDAIVEGPNF 124 KC CG+C+E CP AI +G + Sbjct: 168 EKCTACGICKELCPSRAISKGEIY 191 >gi|46202219|ref|ZP_00053559.2| COG4656: Predicted NADH:ubiquinone oxidoreductase, subunit RnfC [Magnetospirillum magnetotacticum MS-1] Length = 498 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 2/68 (2%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 CI C C CP + + + I + C+ CG C CP I Sbjct: 367 SPCIRCGSCVTYCPCG-LVPVEMASFIRNDKLDLAAKIGVQDCVSCGSCSYICPSH-IPL 424 Query: 121 GPNFEFAT 128 F +A Sbjct: 425 VHFFNYAK 432 >gi|330835618|ref|YP_004410346.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Metallosphaera cuprina Ar-4] gi|329567757|gb|AEB95862.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Metallosphaera cuprina Ar-4] Length = 88 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 11/63 (17%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERCIAC C CP I R R +++ C CG+C CPV AI Sbjct: 36 ERCIACNACFLWCPEGTI-----------QVRGKRAEVNYEYCKGCGVCANVCPVKAISM 84 Query: 121 GPN 123 Sbjct: 85 VSE 87 >gi|325262414|ref|ZP_08129151.1| sulfite reductase, subunit C [Clostridium sp. D5] gi|324032246|gb|EGB93524.1| sulfite reductase, subunit C [Clostridium sp. D5] Length = 355 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 26/87 (29%), Gaps = 6/87 (6%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + G + R ERCI C C C +A T G Sbjct: 161 CPNDCNKAHLCDFGIIGVARMVYHPERCIGCGACARTCE-KASTRVLKLNEDTGKIEKDA 219 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI CG C ACP A P Sbjct: 220 CC-----CIGCGECVRACPTSAWTREP 241 >gi|323144838|ref|ZP_08079407.1| electron transport complex, RnfABCDGE type, B subunit [Succinatimonas hippei YIT 12066] gi|322415363|gb|EFY06128.1| electron transport complex, RnfABCDGE type, B subunit [Succinatimonas hippei YIT 12066] Length = 189 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 10/63 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E +C C C CP AI + + I+ +CI C C + CP I Sbjct: 114 DENKCTGCSKCLKHCPVDAIEG----------KIKTVHHINSEECIGCADCSKICPEQCI 163 Query: 119 VEG 121 Sbjct: 164 SMQ 166 >gi|298674990|ref|YP_003726740.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein [Methanohalobium evestigatum Z-7303] gi|298287978|gb|ADI73944.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanohalobium evestigatum Z-7303] Length = 132 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 10/67 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ C+ C C +ICP I+ +++ CI CG C + CP A+ Sbjct: 75 DDDECVDCGACVSICPKNVFKIDENWNV----------NMEPENCIQCGTCIKTCPHGAL 124 Query: 119 VEGPNFE 125 E Sbjct: 125 SIQNLME 131 >gi|295147993|dbj|BAJ06128.1| trichloroethene reductive dehalogenase [uncultured Dehalococcoides sp.] Length = 250 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 22/60 (36%), Gaps = 3/60 (5%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID---MIKCIYCGLCQEACPVD 116 E C C +C CP QAI+ E Y+ KCI C C+ CP Sbjct: 130 REFCKTCGICAEHCPTQAISHEGPRYDSPHWDCVSGYEGWHLDHHKCINCTNCEVFCPFF 189 Score = 34.7 bits (78), Expect = 4.1, Method: Composition-based stats. Identities = 12/24 (50%), Positives = 15/24 (62%), Gaps = 1/24 (4%) Query: 103 CIYCGLCQEACPVDAI-VEGPNFE 125 C CG+C E CP AI EGP ++ Sbjct: 133 CKTCGICAEHCPTQAISHEGPRYD 156 >gi|256829155|ref|YP_003157883.1| ferredoxin-dependent glutamate synthase [Desulfomicrobium baculatum DSM 4028] gi|256578331|gb|ACU89467.1| ferredoxin-dependent glutamate synthase [Desulfomicrobium baculatum DSM 4028] Length = 544 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 32/99 (32%), Gaps = 20/99 (20%) Query: 54 RRYPNGEERCIACKLCEAICPAQ---------------AITIESGPRCHDGTRRTVRYDI 98 + ++RC C C A+CP Q A H + Sbjct: 19 WQIEWNKDRCTLCGQCCAVCPMQSLELGTFRKRTIKVPAGFKNKPENEHSIYYGIRQRTA 78 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 C+ CG C CP DAI+ ++ + +L Y Sbjct: 79 PHQACVGCGTCSMVCPNDAILP-----MHSDEKDKLRYH 112 >gi|167646403|ref|YP_001684066.1| cytochrome c oxidase accessory protein CcoG [Caulobacter sp. K31] gi|167348833|gb|ABZ71568.1| cytochrome c oxidase accessory protein CcoG [Caulobacter sp. K31] Length = 501 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 16/66 (24%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 RG H + G CI C C +CP D ++CI CG Sbjct: 269 RGAHKKGQPWEGRGDCIDCHQCVVVCPMG----------------IDIRDGSQMECINCG 312 Query: 108 LCQEAC 113 LC +AC Sbjct: 313 LCVDAC 318 >gi|160893574|ref|ZP_02074358.1| hypothetical protein CLOL250_01128 [Clostridium sp. L2-50] gi|163814830|ref|ZP_02206218.1| hypothetical protein COPEUT_00980 [Coprococcus eutactus ATCC 27759] gi|156864559|gb|EDO57990.1| hypothetical protein CLOL250_01128 [Clostridium sp. L2-50] gi|158449769|gb|EDP26764.1| hypothetical protein COPEUT_00980 [Coprococcus eutactus ATCC 27759] Length = 56 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 11/60 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C CP AI+ G + ID +CI CG C +CPV I E Sbjct: 7 DSCIGCGSCAGSCPVGAISDNGG-----------VFVIDGSQCISCGACAGSCPVGTISE 55 >gi|150007436|ref|YP_001302179.1| pyruvate-formate lyase-activating enzyme [Parabacteroides distasonis ATCC 8503] gi|149935860|gb|ABR42557.1| pyruvate-formate lyase-activating enzyme [Parabacteroides distasonis ATCC 8503] Length = 301 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 11/62 (17%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 ++CI C C +CP A+T+ D C CG C E CP A+ Sbjct: 49 RKKCIGCGACVDVCPTGALTLTEAGIVTD-----------RSLCRTCGRCAEVCPTLAME 97 Query: 120 EG 121 Sbjct: 98 MS 99 >gi|23664244|gb|AAN39276.1| iron hydrogenase precursor [Neocallimastix frontalis] Length = 248 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 3/63 (4%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPV 115 +C+ C C C G G R ++ KC+ CG C + CPV Sbjct: 185 DMNKCVKCGRCIRACHHFQNINILGFINRAGYERVGTPMDRPMNFTKCVECGQCSQVCPV 244 Query: 116 DAI 118 AI Sbjct: 245 GAI 247 >gi|88602559|ref|YP_502737.1| ferredoxin [Methanospirillum hungatei JF-1] gi|88188021|gb|ABD41018.1| ferredoxin [Methanospirillum hungatei JF-1] Length = 270 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 23/76 (30%), Gaps = 1/76 (1%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITI-ESGPRCHDGTRRTVRYDIDMIKCIYC 106 R + +CI C LC +C T + T + C C Sbjct: 124 RFLKKIVHDDPLFGKCILCGLCVRVCNEIMGTSAINFINRGPYTVINTPFFEHNPDCAGC 183 Query: 107 GLCQEACPVDAIVEGP 122 C + CP AIV Sbjct: 184 AACAQVCPTKAIVFED 199 >gi|229550119|ref|ZP_04438844.1| NAD-dependent formate dehydrogenase, alpha subunit [Enterococcus faecalis ATCC 29200] gi|257422720|ref|ZP_05599710.1| NAD-dependent formate dehydrogenase alpha subunit [Enterococcus faecalis X98] gi|307277472|ref|ZP_07558564.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX2134] gi|312952394|ref|ZP_07771269.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX0102] gi|229304705|gb|EEN70701.1| NAD-dependent formate dehydrogenase, alpha subunit [Enterococcus faecalis ATCC 29200] gi|257164544|gb|EEU94504.1| NAD-dependent formate dehydrogenase alpha subunit [Enterococcus faecalis X98] gi|306505737|gb|EFM74915.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX2134] gi|310629778|gb|EFQ13061.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX0102] gi|315153357|gb|EFT97373.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX0031] gi|315155866|gb|EFT99882.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX0043] gi|315157967|gb|EFU01984.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX0312] Length = 906 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 3/92 (3%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV 94 F +G P + + + + E+CI C+ C +C + + + Sbjct: 133 FTEGKRMPCHQEDTSNPFFSYDPEKCIMCRRCARVCQLRQGRDVLSIANRGFETKMMPSY 192 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 D C CG C +CP A+ E+ Sbjct: 193 GQAFDQSICESCGNCVSSCPTGALTAKDMKEY 224 >gi|218887979|ref|YP_002437300.1| methyl-viologen-reducing hydrogenase subunit delta [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758933|gb|ACL09832.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 754 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 20/62 (32%), Gaps = 10/62 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RC CK C CP A+ + + +C CG C ACP I Sbjct: 543 NFVRCTQCKRCTEECPFGALDDDEKGTPKP----------NPARCRRCGTCMGACPERVI 592 Query: 119 VE 120 Sbjct: 593 SF 594 >gi|147678981|ref|YP_001213196.1| formate dehydrogenase [Pelotomaculum thermopropionicum SI] gi|146275078|dbj|BAF60827.1| hypothetical formate dehydrogenase [Pelotomaculum thermopropionicum SI] Length = 354 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 10/70 (14%) Query: 59 GEERCIACKLCEAICP--------AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 +CI C C +C A R +I C++CG C Sbjct: 144 DMNKCILCGKCVRVCEEIQGNNAIDFAYRGFKAKVGPAMDARLSDTEI--SNCVFCGNCV 201 Query: 111 EACPVDAIVE 120 CPV A+ E Sbjct: 202 AVCPVGALTE 211 >gi|57234856|ref|YP_181054.1| reductive dehalogenase, putative [Dehalococcoides ethenogenes 195] gi|57225304|gb|AAW40361.1| reductive dehalogenase, putative [Dehalococcoides ethenogenes 195] Length = 505 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 3/72 (4%) Query: 56 YPNGEERCIACKLCEAICPAQAI---TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 E C CK+C CP AI G + + + C +C +CQ Sbjct: 384 DFGSREFCKTCKICAEACPFGAIKTGDPTWEDDTIYGNPGFLGWHCNYDLCPHCPVCQGT 443 Query: 113 CPVDAIVEGPNF 124 CP + I + +F Sbjct: 444 CPFNTIRDDKSF 455 >gi|57168756|ref|ZP_00367887.1| iron-sulfur cluster binding protein [Campylobacter coli RM2228] gi|305432502|ref|ZP_07401664.1| iron-sulfur cluster-binding protein [Campylobacter coli JV20] gi|57019803|gb|EAL56486.1| iron-sulfur cluster binding protein [Campylobacter coli RM2228] gi|304444541|gb|EFM37192.1| iron-sulfur cluster-binding protein [Campylobacter coli JV20] Length = 479 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 23/89 (25%), Gaps = 10/89 (11%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-----QAITIESGPRCHDGTRR 92 R + + RCI C C CP + P Sbjct: 287 EVHVILFDHNRTKMLAHKDYYEALRCIRCGACMNFCPVYDQIGGHAYQTTYPGPIGEVIS 346 Query: 93 TVRYDIDM-----IKCIYCGLCQEACPVD 116 + ID C CG C E CPV Sbjct: 347 PNIFGIDHTGDILNFCSLCGRCSEVCPVQ 375 >gi|331268846|ref|YP_004395338.1| CobQ/CobB/MinD/ParA family protein [Clostridium botulinum BKT015925] gi|329125396|gb|AEB75341.1| CobQ/CobB/MinD/ParA family protein [Clostridium botulinum BKT015925] Length = 282 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 26/82 (31%), Gaps = 21/82 (25%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ C C C+ +C AI+ ID C CG C CP +AI Sbjct: 63 NDKLCTNCGKCQRVCRFDAISNNK---------------IDSYSCEGCGTCIIVCPNNAI 107 Query: 119 VEGPNFEFATETRQELYYDKER 140 E +Y K Sbjct: 108 Q------LNEEKSANMYITKTD 123 >gi|323141693|ref|ZP_08076571.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT 12067] gi|322413849|gb|EFY04690.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT 12067] Length = 296 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 22/72 (30%), Gaps = 18/72 (25%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L +CI C C C + CI CG C++ Sbjct: 243 LFGMKVNAVKCINCDRCMEHCKMDCRHVGDSE------------------CIACGECRKV 284 Query: 113 CPVDAIVEGPNF 124 CPV AI G F Sbjct: 285 CPVKAISLGKKF 296 >gi|312383321|gb|EFR28456.1| hypothetical protein AND_03577 [Anopheles darlingi] Length = 1672 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 20/80 (25%), Positives = 26/80 (32%), Gaps = 14/80 (17%) Query: 59 GEERCIACKLCEAICP---AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP- 114 ++ CI C C C QAI+ +S C C LC CP Sbjct: 1589 DDDLCINCGKCYMTCADSGYQAISFDSQTHLPH----------VTDDCTGCNLCLSVCPI 1638 Query: 115 VDAIVEGPNFEFATETRQEL 134 +D I P R +L Sbjct: 1639 IDCISMVPKKIPHVIKRGKL 1658 >gi|297617703|ref|YP_003702862.1| hydrogenase, Fe-only [Syntrophothermus lipocalidus DSM 12680] gi|297145540|gb|ADI02297.1| hydrogenase, Fe-only [Syntrophothermus lipocalidus DSM 12680] Length = 401 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 10/58 (17%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C C ++CP+ AI G + H ID KC+ CG C +CP AI Sbjct: 28 SDCHGCDHCTSVCPSHAIKGRIGEQHH----------IDTRKCLNCGQCLISCPFGAI 75 >gi|302875371|ref|YP_003844004.1| putative iron-sulfur protein [Clostridium cellulovorans 743B] gi|307688950|ref|ZP_07631396.1| putative iron-sulfur protein [Clostridium cellulovorans 743B] gi|302578228|gb|ADL52240.1| putative iron-sulfur protein [Clostridium cellulovorans 743B] Length = 417 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 11/60 (18%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C C CP AIT++ +D C+ CG+C CP +I+ Sbjct: 292 CVGCGKCAKACPIGAITMKDKKAA-----------VDEEICLGCGVCVRNCPKKSIILKK 340 >gi|291287574|ref|YP_003504390.1| ferredoxin-dependent glutamate synthase [Denitrovibrio acetiphilus DSM 12809] gi|290884734|gb|ADD68434.1| ferredoxin-dependent glutamate synthase [Denitrovibrio acetiphilus DSM 12809] Length = 546 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 26/84 (30%), Gaps = 14/84 (16%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPR---------CHDGTRRTVRYDID----- 99 + +RC C C A CP +AI R I Sbjct: 16 WKISYRPDRCTLCGKCVAACPFKAIEAGVEKRRKVVSDHLTPEPKVEFKTIPVIRQVVNE 75 Query: 100 MIKCIYCGLCQEACPVDAIVEGPN 123 C CG+C+ CP +AI N Sbjct: 76 YEFCRGCGICERVCPNEAINPERN 99 Score = 37.0 bits (84), Expect = 0.99, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 23/62 (37%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100 F+ +R+ N E C C +CE +CP +AI E P G + Sbjct: 57 PEPKVEFKTIPVIRQVVNEYEFCRGCGICERVCPNEAINPERNPDSRFGAKYRATVADPY 116 Query: 101 IK 102 + Sbjct: 117 KR 118 >gi|224371301|ref|YP_002605465.1| ferredoxin (iron-sulfur cluster-binding protein) [Desulfobacterium autotrophicum HRM2] gi|223694018|gb|ACN17301.1| ferredoxin (iron-sulfur cluster-binding protein) [Desulfobacterium autotrophicum HRM2] Length = 293 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 14/62 (22%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C C C +AI+ + + +D I C CG+C CPVDAI Sbjct: 64 DPGICTECGECLERCQFKAISED--------------FIVDPIACEGCGVCVHFCPVDAI 109 Query: 119 VE 120 Sbjct: 110 SF 111 >gi|163741314|ref|ZP_02148706.1| dihydropyrimidine dehydrogenase [Phaeobacter gallaeciensis 2.10] gi|161385667|gb|EDQ10044.1| dihydropyrimidine dehydrogenase [Phaeobacter gallaeciensis 2.10] Length = 434 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 8/63 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117 ++ CI C C A C E + + +C+ C LC CPV+ Sbjct: 343 NQDDCIKCGRCFAAC-------EDTSHQAIAMSEDRVFTVKDDECVACNLCVNVCPVEGC 395 Query: 118 IVE 120 I Sbjct: 396 ITM 398 >gi|150401223|ref|YP_001324989.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanococcus aeolicus Nankai-3] gi|150013926|gb|ABR56377.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus aeolicus Nankai-3] Length = 131 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 11/65 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E++CI C C CP +AI++E D +CI C C + CP +A+ Sbjct: 78 NEDKCIDCGACVVHCPVKAISVEEYKII-----------FDYDECIGCKNCVKVCPTNAV 126 Query: 119 VEGPN 123 Sbjct: 127 EVLDE 131 >gi|126726909|ref|ZP_01742748.1| formate dehydrogenase, alpha subunit [Rhodobacterales bacterium HTCC2150] gi|126703867|gb|EBA02961.1| formate dehydrogenase, alpha subunit [Rhodobacterales bacterium HTCC2150] Length = 921 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 25/65 (38%), Gaps = 5/65 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114 + CI C LC C + G + +D + C+ CG C +ACP Sbjct: 147 NLDACIQCNLCVRACR-DVQVNDVIGLSGRGADAKITFDFDDPMGASSCVACGECVQACP 205 Query: 115 VDAIV 119 A++ Sbjct: 206 TGALM 210 >gi|77465208|ref|YP_354711.1| 4Fe-4S ferredoxin, RnfC [Rhodobacter sphaeroides 2.4.1] gi|77389626|gb|ABA80810.1| 4Fe-4S ferredoxin, RnfC [Rhodobacter sphaeroides 2.4.1] Length = 517 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 30/99 (30%), Gaps = 13/99 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C C CP E R I ++ CI CG C CP + Sbjct: 377 DTMPCIRCGRCAQACPVGLTPFELNARIQSEDLEGAG-RIGLLDCITCGCCSFTCPSNLP 435 Query: 119 VEGPNFEFATETRQELYYDKERL-LNNGDRWESEIVRNI 156 + Y K +L G R + E + + Sbjct: 436 LVQTIH-----------YAKGKLAEAEGRRHQQEETKRL 463 >gi|150391754|ref|YP_001321803.1| aldo/keto reductase [Alkaliphilus metalliredigens QYMF] gi|149951616|gb|ABR50144.1| aldo/keto reductase [Alkaliphilus metalliredigens QYMF] Length = 335 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 26/84 (30%), Gaps = 8/84 (9%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLC-----EAICPAQAITIESGPRCHDGTRRT 93 EK + R + G C C C E PAQ + R Sbjct: 235 EKIPLNKEERQHLEKLQKELGNTFCRRCGYCLPCPQEIDIPAQFLLEGYYTRYDLQDWAV 294 Query: 94 VRYD---IDMIKCIYCGLCQEACP 114 RY I CI CG C+ CP Sbjct: 295 ERYQGQSIKASDCIKCGKCEPRCP 318 >gi|295677294|ref|YP_003605818.1| formate dehydrogenase, alpha subunit [Burkholderia sp. CCGE1002] gi|295437137|gb|ADG16307.1| formate dehydrogenase, alpha subunit [Burkholderia sp. CCGE1002] Length = 1012 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T +G + +C+ CG C Sbjct: 214 YFTYDPSKCIVCNRCVRACEETQGTFALTITGRGFESRVAASENQPFMESECVSCGACVA 273 Query: 112 ACPVDAIVE 120 ACP + E Sbjct: 274 ACPTATLQE 282 >gi|268324729|emb|CBH38317.1| ferredoxin [uncultured archaeon] Length = 128 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 10/70 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 ++ E++CI C C +ICP + + ++ KCI C +C Sbjct: 69 MKLIAWDEQKCIHCGACISICPTGVFKFDPSWQIE----------LEEDKCIRCEVCVNV 118 Query: 113 CPVDAIVEGP 122 CP A+ Sbjct: 119 CPFRALACVD 128 >gi|296124215|ref|YP_003631993.1| molybdopterin oxidoreductase, iron-sulfur binding subunit [Planctomyces limnophilus DSM 3776] gi|296016555|gb|ADG69794.1| molybdopterin oxidoreductase, iron-sulfur binding subunit [Planctomyces limnophilus DSM 3776] Length = 1099 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 17/111 (15%), Positives = 29/111 (26%), Gaps = 21/111 (18%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------------ 77 +P + S R +C+ C C C ++ Sbjct: 767 PPLDSLWPDQPWQLSKENRAWGM----SIDLSKCVGCNACTIACQSENNVPIVGRDQVAR 822 Query: 78 ---ITIESGPRCHDGTRRTVRYDIDMIKCIYCGL--CQEACPVDAIVEGPN 123 + R G + + + C C C++ CPV A P Sbjct: 823 GREMHWLRIDRYFKGPDSDPQMVMQPLTCQQCENAPCEQVCPVAATAHSPE 873 >gi|145637714|ref|ZP_01793367.1| electron transport complex protein RnfC [Haemophilus influenzae PittHH] gi|145269116|gb|EDK09066.1| electron transport complex protein RnfC [Haemophilus influenzae PittHH] Length = 561 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 12/101 (11%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C CP + + + + CI CG+C CP I Sbjct: 352 QACIRCSSCSDACPVN-LMPQQLYWFARSEDHKKSEEYALKDCIECGICAYVCPSH-IPL 409 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSP 161 F RQE K ++ ++ + I ++ Sbjct: 410 IQYF------RQE----KAKIWQIKEKQKKSDEAKIRFEAK 440 >gi|83774067|dbj|BAE64192.1| unnamed protein product [Aspergillus oryzae] Length = 624 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 3/71 (4%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP- 122 I + C C + +G C + T + I CI CG+C + CP AI Sbjct: 36 IYSQKCRQECKKSCPVVRTGKLCIEVTPESKIAFISERLCIGCGICPKKCPFGAIHIINL 95 Query: 123 --NFEFATETR 131 N E R Sbjct: 96 PTNLETQVTHR 106 >gi|134299508|ref|YP_001113004.1| hydrogenase [Desulfotomaculum reducens MI-1] gi|134052208|gb|ABO50179.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Desulfotomaculum reducens MI-1] Length = 593 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 26/68 (38%), Gaps = 3/68 (4%) Query: 59 GEERCIACKLCEAIC-PAQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115 +CI C+ C A+C Q + S T ++ + C CG C CP Sbjct: 147 DPRKCILCRRCVAVCEKVQGVKCISAVNRGFETTIAPPFNQGLFDVNCTMCGQCTLVCPT 206 Query: 116 DAIVEGPN 123 AI E + Sbjct: 207 GAITEVDD 214 >gi|332527764|ref|ZP_08403803.1| formate dehydrogenase, alpha subunit [Rubrivivax benzoatilyticus JA2] gi|332112160|gb|EGJ12136.1| formate dehydrogenase, alpha subunit [Rubrivivax benzoatilyticus JA2] Length = 954 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 25/75 (33%), Gaps = 3/75 (4%) Query: 55 RYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQE 111 + +CI C C C Q + +R D +C+ CG C + Sbjct: 159 YFAYDPSKCIVCNRCVRACEEVQGSFALTISGRGFASRVAAGMDEPFLESECVSCGACVQ 218 Query: 112 ACPVDAIVEGPNFEF 126 ACP + E E Sbjct: 219 ACPTATLQEKSVIEM 233 >gi|325830275|ref|ZP_08163732.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1] gi|325487742|gb|EGC90180.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1] Length = 398 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 13/75 (17%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP--N 123 C C C + A+ +G ++ +CI CG C ACP AI + Sbjct: 36 CLRCVEACTSGALAYRAGELL-----------VEPERCIGCGTCATACPTCAIELRNPTD 84 Query: 124 FEFATETRQELYYDK 138 E + + + K Sbjct: 85 AELTAQLKHSIVATK 99 Score = 40.5 bits (93), Expect = 0.071, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 7/60 (11%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++C +C++C CP AI R C+ C LC+ CP AI Sbjct: 295 DAQKCSSCRMCAVFCPTGAIKKLDEGGVFGIVHR-------PSACMQCRLCEHICPEQAI 347 >gi|315186450|gb|EFU20210.1| electron transport complex, RnfABCDGE type, B subunit [Spirochaeta thermophila DSM 6578] Length = 289 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 21/65 (32%), Gaps = 9/65 (13%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 N CI C C +C I ID +KCI CG C CP Sbjct: 218 KNCAVACIGCGKCVKVCETVTQAITLEHNLAY---------IDPVKCIACGKCVAECPTG 268 Query: 117 AIVEG 121 AI Sbjct: 269 AIAAT 273 Score = 38.9 bits (89), Expect = 0.23, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 26/79 (32%), Gaps = 12/79 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI----------DMIKCIYCGL 108 EE+C AC +C +CP E PR G R + + CI CG Sbjct: 172 DEEKCTACGVCVEVCPRN--LFELRPRGKRGRRVWINCRNTEKGALARKNCAVACIGCGK 229 Query: 109 CQEACPVDAIVEGPNFEFA 127 C + C A Sbjct: 230 CVKVCETVTQAITLEHNLA 248 Score = 37.0 bits (84), Expect = 0.97, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 22/56 (39%), Gaps = 9/56 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 C+ C CP AI+++ T +D KC CG+C E CP Sbjct: 141 CPYGCLHYGDCAEACPFDAISMDP---------VTGLPVVDEEKCTACGVCVEVCP 187 >gi|307718918|ref|YP_003874450.1| hypothetical protein STHERM_c12360 [Spirochaeta thermophila DSM 6192] gi|306532643|gb|ADN02177.1| hypothetical protein STHERM_c12360 [Spirochaeta thermophila DSM 6192] Length = 574 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 11/64 (17%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 R C C C CP +AI I G R ++ C+YCG C E C Sbjct: 5 RLIYTVTSDCFDCYKCIRECPVKAIRISGG-----------RAEVVEELCLYCGHCVEVC 53 Query: 114 PVDA 117 P A Sbjct: 54 PSGA 57 >gi|304314047|ref|YP_003849194.1| ATPase [Methanothermobacter marburgensis str. Marburg] gi|302587506|gb|ADL57881.1| predicted ATPase [Methanothermobacter marburgensis str. Marburg] Length = 591 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 1/60 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +RC K C +C + +T + I C CG+C + CP AI Sbjct: 8 DHDRCQP-KKCNYVCIEYCPGVRMDEDTITIDEKTKKPLISEELCSGCGICTKRCPFKAI 66 >gi|303243875|ref|ZP_07330215.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus okinawensis IH1] gi|302485811|gb|EFL48735.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Methanothermococcus okinawensis IH1] Length = 251 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 19/109 (17%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 T+ +P +K + +RG L + + E+ + ++CPA A+ E Sbjct: 18 TVEFPSDKINLPKAYRGRPVLNQDASDEDV----QKVASLCPAGAVNPEDR--------- 64 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERL 141 +D+ KC++CG CQ D I ++ R++L K+ L Sbjct: 65 ----TLDLGKCLFCGKCQTI-KQDFIKFTRDYRMFALKREDLII-KDIL 107 >gi|301064184|ref|ZP_07204627.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [delta proteobacterium NaphS2] gi|300441629|gb|EFK05951.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [delta proteobacterium NaphS2] Length = 1172 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 26/90 (28%), Gaps = 18/90 (20%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQ------AITIESGPRCHDGTRR----------TV 94 A+ + CI C C +CP A + D Sbjct: 675 IAINVPEWQPDNCIQCNQCAFVCPHAVIRPVLAAKEDLEEAPKDFVTIDAKGKELTDLQF 734 Query: 95 RYDIDMIKCIYCGLCQEACP--VDAIVEGP 122 R I + C CG C CP A++ P Sbjct: 735 RIQISPLDCTGCGSCANTCPAKEKALLMKP 764 >gi|257790250|ref|YP_003180856.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Eggerthella lenta DSM 2243] gi|317489711|ref|ZP_07948214.1| 4Fe-4S binding domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|257474147|gb|ACV54467.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Eggerthella lenta DSM 2243] gi|316911177|gb|EFV32783.1| 4Fe-4S binding domain-containing protein [Eggerthella sp. 1_3_56FAA] Length = 398 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 13/75 (17%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP--N 123 C C C + A+ +G ++ +CI CG C ACP AI + Sbjct: 36 CLRCVEACTSGALAYRAGELL-----------VEPERCIGCGTCATACPTCAIELRNPTD 84 Query: 124 FEFATETRQELYYDK 138 E + + + K Sbjct: 85 AELTAQLKHSIVATK 99 Score = 40.5 bits (93), Expect = 0.072, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 7/60 (11%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++C +C++C CP AI R C+ C LC+ CP AI Sbjct: 295 DAQKCSSCRMCAVFCPTGAIKKLDEGGVFGIVHR-------PSACMQCRLCEHICPEQAI 347 >gi|225574363|ref|ZP_03782973.1| hypothetical protein RUMHYD_02432 [Blautia hydrogenotrophica DSM 10507] gi|225038419|gb|EEG48665.1| hypothetical protein RUMHYD_02432 [Blautia hydrogenotrophica DSM 10507] Length = 130 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 31/66 (46%), Gaps = 10/66 (15%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C C CP AIT + Y I+ KC+ CG C EACP +V+ Sbjct: 53 CVQCGKCAEACPEGAITQNAKG----------VYMINKKKCVGCGKCVEACPFGLVVKAD 102 Query: 123 NFEFAT 128 + E+A+ Sbjct: 103 DKEYAS 108 Score = 34.7 bits (78), Expect = 5.0, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 1/57 (1%) Query: 63 CIACKLCEAIC-PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ACK CE C A + C + + C+ CG C EACP AI Sbjct: 12 CMACKECEIACSEAFYKEFDDTKSCIQIGVKKDGETPKPMVCVQCGKCAEACPEGAI 68 >gi|188585708|ref|YP_001917253.1| electron transport complex, RnfABCDGE type, C subunit [Natranaerobius thermophilus JW/NM-WN-LF] gi|179350395|gb|ACB84665.1| electron transport complex, RnfABCDGE type, C subunit [Natranaerobius thermophilus JW/NM-WN-LF] Length = 441 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 6/67 (8%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP---- 114 E+ CI C C CPA + +G R D + + CI CG C CP Sbjct: 363 EEKPCINCGRCVDDCPAYLLPNVIAHYMENG-RVNESEDYNAMDCIECGCCTYICPANRP 421 Query: 115 -VDAIVE 120 V I Sbjct: 422 LVHYIRM 428 >gi|168333855|ref|ZP_02692098.1| hypothetical protein Epulo_03060 [Epulopiscium sp. 'N.t. morphotype B'] Length = 224 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 27/74 (36%), Gaps = 11/74 (14%) Query: 47 FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 + G + + CI+C C+ C AI + Y ID +C C Sbjct: 159 YNGFDVIEAGLSIGSGCISCGKCKRECSFDAIYQDERQ-----------YKIDGSRCDEC 207 Query: 107 GLCQEACPVDAIVE 120 G C CP +AI Sbjct: 208 GSCFLVCPANAITH 221 >gi|170578894|ref|XP_001894586.1| ATP-binding cassette sub-family E member 1 (Ribonuclease 4 inhibitor) [Brugia malayi] gi|158598731|gb|EDP36568.1| ATP-binding cassette sub-family E member 1 (Ribonuclease 4 inhibitor), putative [Brugia malayi] Length = 610 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 22/56 (39%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 K C C + G +C + +I CI CG+C + CP +AI Sbjct: 28 KNCGLACKKSCPVVRMGKQCIVVESNSKMAEISETLCIGCGICVKKCPYEAIKIIN 83 >gi|147678971|ref|YP_001213186.1| hypothetical protein PTH_2636 [Pelotomaculum thermopropionicum SI] gi|146275068|dbj|BAF60817.1| Uncharacterized Fe-S center protein [Pelotomaculum thermopropionicum SI] Length = 372 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 24/73 (32%), Gaps = 11/73 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C +C +C C +A+ +G D C CG C CP A Sbjct: 193 DELACRSCGICADYCQWEALQYANG-----------LLSYDESACSGCGFCLLVCPHKAR 241 Query: 119 VEGPNFEFATETR 131 + A + R Sbjct: 242 RLSRDDTAAFQRR 254 >gi|15896990|ref|NP_341595.1| hypothetical protein SSO0018 [Sulfolobus solfataricus P2] gi|284173857|ref|ZP_06387826.1| hypothetical protein Ssol98_04260 [Sulfolobus solfataricus 98/2] gi|13813147|gb|AAK40385.1| Hypothetical protein SSO0018 [Sulfolobus solfataricus P2] gi|261601644|gb|ACX91247.1| conserved hypothetical protein [Sulfolobus solfataricus 98/2] Length = 619 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 3/59 (5%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQEACPVD 116 CI C C ++CP T + G ++ D+ C CGLC++ CPV Sbjct: 284 FNGCILCGKCVSVCPYGKQTNDVF-HTPLGFYSITYFEKENDLANCHMCGLCEQVCPVR 341 >gi|146297119|ref|YP_001180890.1| thiamine pyrophosphate binding domain-containing protein [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145410695|gb|ABP67699.1| thiamine pyrophosphate enzyme domain protein TPP-binding protein [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 598 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 24/68 (35%), Gaps = 10/68 (14%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 Y E+CI CK C + AI+ + ID C CGLC Sbjct: 534 ERYNGYYRINEKCINCKACLNVTGCPAISEDEDKNVF----------IDKTLCNGCGLCA 583 Query: 111 EACPVDAI 118 CP AI Sbjct: 584 NFCPRMAI 591 >gi|118579215|ref|YP_900465.1| nitroreductase [Pelobacter propionicus DSM 2379] gi|118501925|gb|ABK98407.1| nitroreductase [Pelobacter propionicus DSM 2379] Length = 275 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 26/76 (34%), Gaps = 7/76 (9%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 F E + C+ +C A+CP + +S T KCI Sbjct: 2 YFSEEKRMSLITIDHTTCLRDGICHAVCPLRLFETDSEGFPEFRTGAD-------SKCIA 54 Query: 106 CGLCQEACPVDAIVEG 121 CG C CPV A+ Sbjct: 55 CGHCVAVCPVSAVHHQ 70 >gi|189499559|ref|YP_001959029.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [Chlorobium phaeobacteroides BS1] gi|189495000|gb|ACE03548.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Chlorobium phaeobacteroides BS1] Length = 1182 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 17/102 (16%), Positives = 26/102 (25%), Gaps = 18/102 (17%) Query: 31 KTTINYPFEKGSTSPRFRGEHAL--RRYPNGEERCIACKLCEAICPAQ------------ 76 + P S + L + + CI C C +CP Sbjct: 658 PVSQMPPDGTFPVSTSKFEKRNLAEKVPVWEADVCIQCGKCAFMCPHGVIRSKAYDPKYL 717 Query: 77 --AITIESGPRCHDGTRRTVRYDIDM--IKCIYCGLCQEACP 114 A ++Y I + C C +C CP Sbjct: 718 GNAPKTFKNIDAKGKNWEGLKYTIQVAVEDCTGCEICAHICP 759 >gi|46201903|ref|ZP_00208299.1| COG1145: Ferredoxin [Magnetospirillum magnetotacticum MS-1] Length = 236 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 9/85 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + +C C C + CPA+A++ I C+ CGLC+ CP A+ Sbjct: 82 DQAKCTLCMACISACPAKALSGHPDKPSLG---------ILEANCVQCGLCRVTCPEKAV 132 Query: 119 VEGPNFEFATETRQELYYDKERLLN 143 P F R +E Sbjct: 133 TLVPRLAFGPNARVRQVLKEEEPYE 157 >gi|325266549|ref|ZP_08133226.1| iron-sulfur cluster binding protein [Kingella denitrificans ATCC 33394] gi|324981992|gb|EGC17627.1| iron-sulfur cluster binding protein [Kingella denitrificans ATCC 33394] Length = 484 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 26/82 (31%), Gaps = 14/82 (17%) Query: 62 RCIACKLCEAICPA-----QAITIESGPRCHDGTRRTVRYDIDMIK-----CIYCGLCQE 111 +CI C C CP A + P ++ + C CG C E Sbjct: 318 QCIRCGACMNHCPVYTRIGGAAYGTTYPGPIGEILSPHLLGLEPTRDLPTACTMCGACVE 377 Query: 112 ACPVDAIVEGPNFEFATETRQE 133 CPV P E R+E Sbjct: 378 VCPVKI----PITEQMQRLREE 395 >gi|323704596|ref|ZP_08116174.1| MinD family protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323536058|gb|EGB25831.1| MinD family protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 281 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 26/97 (26%), Gaps = 23/97 (23%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 Y F ++C C C C A+T Sbjct: 43 YLFLKPEIEKVKDVNVMIPD------------IDYDKCTLCGECTRACRFGALT------ 84 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + + I C CG C E CP +AI E P Sbjct: 85 -----KLIKKILIFDHLCHSCGACYEICPYNAIKEIP 116 >gi|300697562|ref|YP_003748223.1| tugsten containing formate dehydrogenase alpha subunit; 2Fe-2S ferredoxin N-term domain (fdwA) [Ralstonia solanacearum CFBP2957] gi|299074286|emb|CBJ53833.1| putative tugsten containing formate dehydrogenase alpha subunit; 2Fe-2S ferredoxin N-term domain (fdwA) [Ralstonia solanacearum CFBP2957] Length = 892 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 27/81 (33%), Gaps = 4/81 (4%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---YDIDMIKCIYCGLCQEACPVD 116 +RCI C+ C IC R R + C+ CG C ++CP Sbjct: 139 MDRCIYCERCVRICEEVQGQFVWEARGRGDATRIATANGPTMLSAGCVSCGACVDSCPSG 198 Query: 117 AIVE-GPNFEFATETRQELYY 136 A+ + E R Y Sbjct: 199 ALFDKRRIVEPTAWARTTCTY 219 >gi|257452980|ref|ZP_05618279.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium sp. 3_1_5R] gi|317059520|ref|ZP_07924005.1| nitrogen fixation iron-sulfur protein RNFC [Fusobacterium sp. 3_1_5R] gi|313685196|gb|EFS22031.1| nitrogen fixation iron-sulfur protein RNFC [Fusobacterium sp. 3_1_5R] Length = 436 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 31/92 (33%), Gaps = 9/92 (9%) Query: 39 EKGSTSPRFRGEHALRRYPNGEER---CIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 E+ G AL + CI C C ++CP + R + Sbjct: 338 EEAPVIKGTSGLLALTTEETNPYKPKACIGCGKCVSVCPMS-LEPVMFARLAAFQQWEGL 396 Query: 96 YDIDMIKCIYCGLCQEACP-----VDAIVEGP 122 + ++ CI CG C CP +AI G Sbjct: 397 QNYHLMDCIECGSCAFICPANRPLTEAIKIGK 428 >gi|255972896|ref|ZP_05423482.1| formate dehydrogenase [Enterococcus faecalis T1] gi|255963914|gb|EET96390.1| formate dehydrogenase [Enterococcus faecalis T1] Length = 895 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 3/92 (3%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV 94 F +G P + + + + E+CI C+ C +C + + + Sbjct: 122 FTEGKRMPCHQEDTSNPFFSYDPEKCIMCRRCARVCQLRQGRDVLSIANRGFETKMMPSY 181 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 D C CG C +CP A+ E+ Sbjct: 182 GQAFDQSICESCGNCVSSCPTGALTAKDMKEY 213 >gi|311232771|gb|ADP85625.1| iron-sulfur cluster-binding protein, putative [Desulfovibrio vulgaris RCH1] Length = 452 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 38/124 (30%), Gaps = 37/124 (29%) Query: 58 NGEERCIACKLCEAICPAQAIT-----------------------IESGPRCHDGTRRTV 94 + C C LC CP A+ E+ + Sbjct: 289 CDADACTGCGLCVRACPVDALHVVRKDGQRTASNETVDARGDVPDDEAASSTARRGKARR 348 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVR 154 R ++D C+ CG+C CP A+ E R + E D +E I++ Sbjct: 349 RLEVDTSVCLGCGVCALRCPTGALRL--------EERPARVFHPE------DSFERVILQ 394 Query: 155 NIVT 158 ++ Sbjct: 395 SLER 398 Score = 37.8 bits (86), Expect = 0.57, Method: Composition-based stats. Identities = 12/23 (52%), Positives = 13/23 (56%) Query: 97 DIDMIKCIYCGLCQEACPVDAIV 119 D C CGLC ACPVDA+ Sbjct: 288 TCDADACTGCGLCVRACPVDALH 310 >gi|260589729|ref|ZP_05855642.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Blautia hansenii DSM 20583] gi|331083161|ref|ZP_08332277.1| hypothetical protein HMPREF0992_01201 [Lachnospiraceae bacterium 6_1_63FAA] gi|260539969|gb|EEX20538.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Blautia hansenii DSM 20583] gi|330404550|gb|EGG84090.1| hypothetical protein HMPREF0992_01201 [Lachnospiraceae bacterium 6_1_63FAA] Length = 252 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 27/73 (36%), Gaps = 12/73 (16%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 +R + + P + C C LC +CP AI ES + KCI Sbjct: 163 KPYRKYNGVPLKPKAGKDCKGCGLCAQVCPVGAIPAESPKKTDK------------SKCI 210 Query: 105 YCGLCQEACPVDA 117 C C + CP A Sbjct: 211 SCMRCIQVCPKKA 223 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 6/53 (11%) Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIK------CIYCGLCQEACPVDAIV 119 + + + G + +Y+ +K C CGLC + CPV AI Sbjct: 145 IAHKIKSGDEKEISVPGNKPYRKYNGVPLKPKAGKDCKGCGLCAQVCPVGAIP 197 >gi|218782860|ref|YP_002434178.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Desulfatibacillum alkenivorans AK-01] gi|218764244|gb|ACL06710.1| Indolepyruvate ferredoxin oxidoreductase, alpha/beta subunit [Desulfatibacillum alkenivorans AK-01] Length = 617 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 11/80 (13%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E + + + E+C +LC A+ +E+ I Sbjct: 544 ELCPLYAKALKRPVKKPFRIDMEKCKDHRLCVDALGCPAMYVENNKVA-----------I 592 Query: 99 DMIKCIYCGLCQEACPVDAI 118 + +CI C +C + CP AI Sbjct: 593 NAEQCIGCAVCAQVCPEHAI 612 >gi|167752244|ref|ZP_02424371.1| hypothetical protein ALIPUT_00486 [Alistipes putredinis DSM 17216] gi|167660485|gb|EDS04615.1| hypothetical protein ALIPUT_00486 [Alistipes putredinis DSM 17216] Length = 589 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 5/69 (7%) Query: 59 GEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 E+CI C+ CE +C A+++ I C+ CG C CP Sbjct: 148 NMEKCILCRRCETVCNQVQTVGALSVVGRGFTSVLCTAFNDP-ILTTNCVNCGQCVAVCP 206 Query: 115 VDAIVEGPN 123 A+ E N Sbjct: 207 TSALSENSN 215 >gi|53803000|ref|YP_115208.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methylococcus capsulatus str. Bath] gi|53756761|gb|AAU91052.1| 4Fe-4S binding domain protein [Methylococcus capsulatus str. Bath] Length = 450 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 7/67 (10%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEF-ATETRQELYYDKERLLNNGDRWESEIVRNI 156 ID C+ C LC ACP AI +F+F A T + + W + + Sbjct: 193 IDYNPCLECKLCVGACPTGAIGMDGHFDFSACYTH-----NYREFMGGFSDWAETVAAST 247 Query: 157 VTDSPYR 163 S YR Sbjct: 248 SA-SDYR 253 >gi|73749240|ref|YP_308479.1| putative reductive dehalogenase [Dehalococcoides sp. CBDB1] gi|73660956|emb|CAI83563.1| putative reductive dehalogenase [Dehalococcoides sp. CBDB1] Length = 460 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 6/68 (8%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI------YC 106 + +E C CK C CP+QAI+++ P T +++R+ D KC+ C Sbjct: 344 MPIDFGLQEFCKVCKKCAENCPSQAISMDDEPSEVITTVKSIRWLQDEKKCLARRLAYGC 403 Query: 107 GLCQEACP 114 CQ CP Sbjct: 404 AKCQSVCP 411 >gi|116051507|ref|YP_789657.1| electron transport complex protein RnfB [Pseudomonas aeruginosa UCBPP-PA14] gi|313108854|ref|ZP_07794838.1| putative NADH:ubiquinone oxidoreductase, subunit RnfB [Pseudomonas aeruginosa 39016] gi|122260647|sp|Q02QX9|RNFB_PSEAB RecName: Full=Electron transport complex protein rnfB gi|115586728|gb|ABJ12743.1| putative NADH:ubiquinone oxidoreductase, subunit RnfB [Pseudomonas aeruginosa UCBPP-PA14] gi|310881340|gb|EFQ39934.1| putative NADH:ubiquinone oxidoreductase, subunit RnfB [Pseudomonas aeruginosa 39016] Length = 188 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 25/67 (37%), Gaps = 10/67 (14%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 R E CI C C CP AI + + + + +C C LC E C Sbjct: 104 RVAYIREAECIGCTKCIQACPVDAIVGAA----------RLMHTVIADECTGCDLCLEPC 153 Query: 114 PVDAIVE 120 PVD I Sbjct: 154 PVDCIEM 160 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 14/38 (36%), Positives = 16/38 (42%) Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E P I +CI C C +ACPVDAI Sbjct: 91 EPEPLDAAEETPPRVAYIREAECIGCTKCIQACPVDAI 128 >gi|317472987|ref|ZP_07932290.1| iron only hydrogenase large subunit domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|316899532|gb|EFV21543.1| iron only hydrogenase large subunit domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 572 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 35/100 (35%), Gaps = 6/100 (6%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA---QAITIESGPRCHDGTRRT 93 PF+K + L R N +CI C C IC + SG + Sbjct: 122 PFKKEFVHKEWDKTFPLIRDAN---KCIKCMRCVQICDKVQGLNVWDVSGTGARTTVDVS 178 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 DI + C CG C CPV A+ E + ++ Sbjct: 179 RNRDIRVADCSLCGQCITHCPVGALRERDDTSMLFSALED 218 >gi|312621606|ref|YP_004023219.1| hypothetical protein Calkro_0500 [Caldicellulosiruptor kronotskyensis 2002] gi|312202073|gb|ADQ45400.1| protein of unknown function DUF362 [Caldicellulosiruptor kronotskyensis 2002] Length = 375 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 11/66 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C C CPAQAI + S +D+ KCI C C E CP AI Sbjct: 314 DINICIGCAECFNACPAQAIEMRSRKAY-----------VDLKKCIRCYCCHELCPAKAI 362 Query: 119 VEGPNF 124 +F Sbjct: 363 KIKRSF 368 >gi|307299068|ref|ZP_07578870.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermotogales bacterium mesG1.Ag.4.2] gi|306915493|gb|EFN45878.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermotogales bacterium mesG1.Ag.4.2] Length = 356 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 12/53 (22%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + C+AC +CE CP AIT++ R ID CI CG C C Sbjct: 192 KNCVACGMCEKNCPTGAITVDRVAR------------IDYEVCIGCGQCIAMC 232 Score = 33.9 bits (76), Expect = 6.7, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 14/32 (43%) Query: 87 HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + + C+ CG+C++ CP AI Sbjct: 178 KMEQHSESKPVVREKNCVACGMCEKNCPTGAI 209 >gi|304315174|ref|YP_003850321.1| acetyl-CoA decarbonylase/synthase complex, alpha subunit [Methanothermobacter marburgensis str. Marburg] gi|302588633|gb|ADL59008.1| acetyl-CoA decarbonylase/synthase complex, alpha subunit [Methanothermobacter marburgensis str. Marburg] Length = 311 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 36/106 (33%), Gaps = 6/106 (5%) Query: 28 FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH 87 F+ P + T R + + C C C +CPA +E+ Sbjct: 28 FRVNCVRCSPCDSNCTPSRKPEKQKDIDLNSVLGYCELCGECNRVCPAMLPIMEAIDDAK 87 Query: 88 DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 +G R + C CG C E CPV P + E+R E Sbjct: 88 NGGLRAIGT--LYESCSGCGRCMEVCPVG----VPILDIIRESRGE 127 >gi|291544586|emb|CBL17695.1| NADH:ubiquinone oxidoreductase, NADH-binding (51 kD) subunit [Ruminococcus sp. 18P13] Length = 597 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 25/96 (26%), Positives = 36/96 (37%), Gaps = 15/96 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 LRY F+ + + ++ L Y ++C C C +CPA AI+ Sbjct: 514 TLRY-FRDEYIAHIVEKRCPAGVC----KDLLSYEIQADKCKGCTACARVCPAGAISGS- 567 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + ID KC+ CG C E C AI Sbjct: 568 ---------VKNPHTIDKSKCLKCGACIEKCRFGAI 594 >gi|281412258|ref|YP_003346337.1| hydrogenase, Fe-only [Thermotoga naphthophila RKU-10] gi|281373361|gb|ADA66923.1| hydrogenase, Fe-only [Thermotoga naphthophila RKU-10] Length = 582 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 3/65 (4%) Query: 59 GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDI--DMIKCIYCGLCQEACPV 115 +C+ C+ C +C Q + I S T +D+ CI CG C CP Sbjct: 144 DLSKCVKCQRCVRVCSEIQGVNIYSMVERGYRTYPGTPFDMPVYETDCIGCGQCAAFCPT 203 Query: 116 DAIVE 120 AIVE Sbjct: 204 GAIVE 208 >gi|261402606|ref|YP_003246830.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus vulcanius M7] gi|261369599|gb|ACX72348.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus vulcanius M7] Length = 398 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 31/132 (23%), Positives = 47/132 (35%), Gaps = 18/132 (13%) Query: 9 SFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKL 68 S +L EF R + K R+R + +YP RCI+C+ Sbjct: 4 SLWYLYEFAR------RKWIKRFINAKSDKSSYIPPERYRKVPPIVKYPE---RCISCEG 54 Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 C+ CPA A+ + ID CI C C E CP + + Sbjct: 55 CKESCPAFAVEMIYSEEFQKNIPL-----IDEGSCIACANCVEMCPTGVL----EIDKHR 105 Query: 129 ETRQELYYDKER 140 + L++DK + Sbjct: 106 IETEGLFFDKPK 117 Score = 41.2 bits (95), Expect = 0.042, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 3/62 (4%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C+ C C +CP AI R+ + Y +D CI C +CQ+ C AI Sbjct: 240 NCVKCGFCIDVCPTTAIRTHKEIVPK---RKDICYMVDEDMCIGCRICQKVCGSGAIKIS 296 Query: 122 PN 123 Sbjct: 297 KE 298 Score = 38.5 bits (88), Expect = 0.30, Method: Composition-based stats. Identities = 22/90 (24%), Positives = 31/90 (34%), Gaps = 9/90 (10%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P T + Y E+ CI C++C+ +C + AI I + Sbjct: 251 CPTTAIRTHKEIVPKRKDICYMVDEDMCIGCRICQKVCGSGAIKISKETKLPY------- 303 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 I C+ G C CPV AI E Sbjct: 304 --IIPDLCVRGGACARECPVGAIKIVKPEE 331 Score = 38.2 bits (87), Expect = 0.44, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 11/75 (14%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 + T F + +E C+ C CE CP I R+ RY I+ Sbjct: 105 RIETEGLFFDKPKYNNLLIDDEVCVHCGNCERACPINVIE-----------RKEGRYVIN 153 Query: 100 MIKCIYCGLCQEACP 114 M +CI C C ACP Sbjct: 154 MSQCISCKECINACP 168 >gi|241206609|ref|YP_002977705.1| formate dehydrogenase, alpha subunit [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240860499|gb|ACS58166.1| formate dehydrogenase, alpha subunit [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 959 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 3/79 (3%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRT--VRYDIDMI 101 + + + +CI C C C Q + G+R + + Sbjct: 160 KWMPKDESNPYFTYDPSKCIVCSRCVRACEEVQGTFALTIEGRGFGSRVSPGMHEHFIDS 219 Query: 102 KCIYCGLCQEACPVDAIVE 120 +C+ CG C +ACP + E Sbjct: 220 ECVSCGACVQACPTATLTE 238 >gi|126459018|ref|YP_001055296.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Pyrobaculum calidifontis JCM 11548] gi|126248739|gb|ABO07830.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Pyrobaculum calidifontis JCM 11548] Length = 275 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 24/84 (28%), Gaps = 23/84 (27%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC---------GLC 109 ++ CI C CE CP + KC +C C Sbjct: 120 NKDLCIGCGYCENACPFNVPKKGQDGK--------------YYKCTFCVDRIQNGRAPAC 165 Query: 110 QEACPVDAIVEGPNFEFATETRQE 133 E CP GP E R+E Sbjct: 166 VEVCPTGVFTFGPIEEVTKAAREE 189 Score = 39.7 bits (91), Expect = 0.13, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 21/59 (35%), Gaps = 12/59 (20%) Query: 60 EERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 C+ C C CPA AI I+ CI CG C+ ACP + Sbjct: 89 PYNCLHCVDAPCARACPAGAIVTTPEGAVV----------INKDLCIGCGYCENACPFN 137 >gi|116254124|ref|YP_769962.1| NAD-dependent formate dehydrogenase alpha subunit [Rhizobium leguminosarum bv. viciae 3841] gi|115258772|emb|CAK09878.1| putative NAD-dependent formate dehydrogenase alpha subunit [Rhizobium leguminosarum bv. viciae 3841] Length = 959 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 3/79 (3%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRT--VRYDIDMI 101 + + + +CI C C C Q + G+R + + Sbjct: 160 KWMPKDESNPYFTYDPSKCIVCSRCVRACEEVQGTFALTIEGRGFGSRVSPGMHEHFIDS 219 Query: 102 KCIYCGLCQEACPVDAIVE 120 +C+ CG C +ACP + E Sbjct: 220 ECVSCGACVQACPTATLTE 238 >gi|89901860|ref|YP_524331.1| 4Fe-4S ferredoxin [Rhodoferax ferrireducens T118] gi|89346597|gb|ABD70800.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodoferax ferrireducens T118] Length = 545 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 8/66 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +RC C C +CP A+ +T + C+ CGLC CP +A+ Sbjct: 418 NAQRCTLCFACVNLCPTSALKAVDA--------KTQQLVFQESACVQCGLCVVGCPEEAL 469 Query: 119 VEGPNF 124 F Sbjct: 470 SLQARF 475 Score = 38.9 bits (89), Expect = 0.21, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 33/108 (30%), Gaps = 24/108 (22%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 +G C C +C QAI ID C C C ACP A Sbjct: 171 HGVSGFQGCTRCLDVCSVQAIASAGN-----------TVRIDPYLCQGCATCTLACPTGA 219 Query: 118 IVEGPNFEFATETRQELYYDKERLLNNGDR-------WESEIVRNIVT 158 + F TR L E+ L+N D ++ ++ Sbjct: 220 LS------FKFPTRDALGRRLEQTLSNPDTAKTVLIVHSRQLAASVQA 261 >gi|323485418|ref|ZP_08090766.1| hypothetical protein HMPREF9474_02517 [Clostridium symbiosum WAL-14163] gi|323694183|ref|ZP_08108360.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Clostridium symbiosum WAL-14673] gi|323401281|gb|EGA93631.1| hypothetical protein HMPREF9474_02517 [Clostridium symbiosum WAL-14163] gi|323501760|gb|EGB17645.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Clostridium symbiosum WAL-14673] Length = 56 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 11/58 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C++C C CP AI+ G Y+ID CI CG C +CP AI Sbjct: 7 DSCVSCGACAGDCPVGAISQGDGK-----------YEIDANTCIDCGSCAGSCPTGAI 53 >gi|306820590|ref|ZP_07454220.1| ferredoxin [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304551371|gb|EFM39332.1| ferredoxin [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 56 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 26/58 (44%), Gaps = 11/58 (18%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + CI+C CE CP AI+ +Y ID CI CG C CPVDA Sbjct: 6 HDNCISCGACEPECPVGAISQGD-----------TQYIIDASACIDCGACASVCPVDA 52 >gi|288931276|ref|YP_003435336.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Ferroglobus placidus DSM 10642] gi|288893524|gb|ADC65061.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Ferroglobus placidus DSM 10642] Length = 97 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 7/66 (10%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 EE+CI C C CP I + +D C CG+C CP Sbjct: 28 WAFVDEEKCIGCGRCVKFCPEPCIELVEKD-------GNKVAKVDHDYCKGCGICASVCP 80 Query: 115 VDAIVE 120 V+AI Sbjct: 81 VNAIRM 86 Score = 35.5 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 13/45 (28%), Positives = 16/45 (35%) Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 A + G T +D KCI CG C + CP I Sbjct: 9 GASNPPKTTQMKTGDWGTEWAFVDEEKCIGCGRCVKFCPEPCIEL 53 >gi|296109799|ref|YP_003616748.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus infernus ME] gi|295434613|gb|ADG13784.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus infernus ME] Length = 81 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 21/67 (31%), Gaps = 7/67 (10%) Query: 61 ERCIACKLCEAICPAQAITIE-------SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 ERC C C CP A + C CG C EAC Sbjct: 11 ERCHGCGNCVVACPVNAQDPNTWGGKGSKSEDVVIRVENGTVELVKPELCGGCGACVEAC 70 Query: 114 PVDAIVE 120 PVDAI Sbjct: 71 PVDAIKL 77 >gi|221369207|ref|YP_002520303.1| Electron transport complex, RnfABCDGE type, D subunit [Rhodobacter sphaeroides KD131] gi|221162259|gb|ACM03230.1| Electron transport complex, RnfABCDGE type, D subunit [Rhodobacter sphaeroides KD131] Length = 517 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 30/99 (30%), Gaps = 13/99 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C C CP E R I ++ CI CG C CP + Sbjct: 377 DTMPCIRCGRCAQACPVGLTPFELNARIQSEDLEGAG-RIGLLDCITCGCCSFTCPSNLP 435 Query: 119 VEGPNFEFATETRQELYYDKERLLNN-GDRWESEIVRNI 156 + Y K +L G R + E + + Sbjct: 436 LVQTIH-----------YAKGKLAEAEGRRHQQEETKRL 463 >gi|154494980|ref|ZP_02033985.1| hypothetical protein PARMER_04026 [Parabacteroides merdae ATCC 43184] gi|154085530|gb|EDN84575.1| hypothetical protein PARMER_04026 [Parabacteroides merdae ATCC 43184] Length = 257 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 12/60 (20%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI+C LCE ICP I++++G + C+ C C CPV AI G Sbjct: 196 CISCGLCERICPTGTISMQAGKP------------VWTDTCVQCVACIHRCPVRAIEYGK 243 >gi|197117854|ref|YP_002138281.1| electron transfer flavoprotein subunit alpha [Geobacter bemidjiensis Bem] gi|197087214|gb|ACH38485.1| electron transfer flavoprotein, alpha subunit [Geobacter bemidjiensis Bem] Length = 447 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 27/109 (24%), Positives = 38/109 (34%), Gaps = 27/109 (24%) Query: 62 RCIACK-LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 +CIAC CE+ CP I + I KCI C C + C A+ Sbjct: 20 KCIACGARCESSCPVSGIQMSEAGEPS----------IVDGKCIGCAKCVKVCAAGALEM 69 Query: 121 GPNFEFATETRQELYYDKERLLNNG------DRWESEIVRNIVTDSPYR 163 T +EL K+ +G D E E+ + + YR Sbjct: 70 -------FYTPEELELLKQWEAQHGAVEEELDPAEKELRAKL---AQYR 108 >gi|254252943|ref|ZP_04946261.1| hypothetical protein BDAG_02189 [Burkholderia dolosa AUO158] gi|124895552|gb|EAY69432.1| hypothetical protein BDAG_02189 [Burkholderia dolosa AUO158] Length = 984 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 23/76 (30%), Gaps = 3/76 (3%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCI 104 R + + + +CI C C C T + +C+ Sbjct: 180 RKDESNPYFTYDPSKCIVCNRCVRACEETQGTFALTIAARGFESRVAAGESEPFMESECV 239 Query: 105 YCGLCQEACPVDAIVE 120 CG C ACP + E Sbjct: 240 SCGACVAACPTATLQE 255 >gi|154419790|ref|XP_001582911.1| hypothetical protein [Trichomonas vaginalis G3] gi|121917149|gb|EAY21925.1| hypothetical protein TVAG_249850 [Trichomonas vaginalis G3] Length = 599 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 23/70 (32%), Gaps = 3/70 (4%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 +R +RC K C+ C SG I CI CG+C + Sbjct: 6 IRLAVVNADRCKP-KKCQKECKGVCPVNRSGKN--CIKVPVTGCAISEALCIGCGMCVKK 62 Query: 113 CPVDAIVEGP 122 CP AI Sbjct: 63 CPFHAIQIIN 72 >gi|134045341|ref|YP_001096827.1| formate dehydrogenase subunit beta (F420) [Methanococcus maripaludis C5] gi|132662966|gb|ABO34612.1| formate dehydrogenase, beta subunit (F420) [Methanococcus maripaludis C5] Length = 387 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 11/98 (11%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPA--------QAITIESGPRCHDG-TRRTVRYDID 99 + + +CI C C +CP A ++SG + + VR Sbjct: 272 EYPTIEEWNRQWNKCIKCYGCRDVCPVCFCRECALNADYLDSGSIPPNPIMFQGVRMSHM 331 Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATE-TRQELYY 136 C+ CG C++ CP I F E TR+EL Y Sbjct: 332 AFSCVNCGQCEDVCP-MEIPVARIFHKVQEKTRKELGY 368 >gi|11498271|ref|NP_069497.1| heterodisulfide reductase, subunit A (hdrA-1) [Archaeoglobus fulgidus DSM 4304] gi|2649956|gb|AAB90578.1| heterodisulfide reductase, subunit A (hdrA-1) [Archaeoglobus fulgidus DSM 4304] Length = 404 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 25/71 (35%), Gaps = 7/71 (9%) Query: 60 EERCIACKLCEAICPAQAITIE-------SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 E C AC C+ +CP +A + +Y ID C CG C A Sbjct: 101 NENCTACGACKEVCPIEAPDEYNFGLKKKKAIDLPNIMAMPFQYYIDDKYCNKCGECVSA 160 Query: 113 CPVDAIVEGPN 123 C +AI Sbjct: 161 CKYNAIDLNEE 171 >gi|20807368|ref|NP_622539.1| ferredoxin 2 [Thermoanaerobacter tengcongensis MB4] gi|254478276|ref|ZP_05091656.1| Putative Fe-S cluster family protein [Carboxydibrachium pacificum DSM 12653] gi|20515886|gb|AAM24143.1| Ferredoxin 2 [Thermoanaerobacter tengcongensis MB4] gi|214035741|gb|EEB76435.1| Putative Fe-S cluster family protein [Carboxydibrachium pacificum DSM 12653] Length = 431 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 11/59 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 ++RC C C CP +AI + G I +CI CG C CP A Sbjct: 10 DKDRCRGCTNCIKRCPTEAIRVREGKA-----------RIINERCIDCGECIRVCPYHA 57 >gi|16330687|ref|NP_441415.1| bidirectional hydrogenase complex protein HoxU [Synechocystis sp. PCC 6803] gi|1653179|dbj|BAA18095.1| hydrogenase subunit [Synechocystis sp. PCC 6803] gi|1771718|emb|CAA66210.1| hydrogenase subunit [Synechocystis sp. PCC 6803] Length = 238 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 4/73 (5%) Query: 55 RYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLCQ 110 + RCI C C +C A + R + + + C CG C Sbjct: 140 MFGIDHNRCILCTRCVRVCDEIEGAHVWDVAYRGAECKIVSGLNQPWGTVDACTSCGKCV 199 Query: 111 EACPVDAIVEGPN 123 +ACP +I Sbjct: 200 DACPTGSIFHKGE 212 >gi|325959692|ref|YP_004291158.1| NiL domain-containing protein [Methanobacterium sp. AL-21] gi|325331124|gb|ADZ10186.1| NIL domain-containing protein [Methanobacterium sp. AL-21] Length = 128 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 10/68 (14%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 R EE CI C C ++CP AI +E + +CI C LC Sbjct: 67 PIKRVVKKDEEMCIDCGACVSLCPVHAIIVEDDWTVEVKDK----------ECIGCKLCS 116 Query: 111 EACPVDAI 118 +CP AI Sbjct: 117 YSCPTKAI 124 Score = 35.5 bits (80), Expect = 2.3, Method: Composition-based stats. Identities = 10/33 (30%), Positives = 16/33 (48%) Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 CI CG C CPV AI+ ++ + ++ Sbjct: 76 EEMCIDCGACVSLCPVHAIIVEDDWTVEVKDKE 108 >gi|308125451|ref|ZP_05775364.2| electron transport complex protein RnfC [Vibrio parahaemolyticus K5030] gi|308111312|gb|EFO48852.1| electron transport complex protein RnfC [Vibrio parahaemolyticus K5030] Length = 528 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 1/53 (1%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 CI C C CPA + + ++++ CI CG C CP Sbjct: 36 ECIRCGQCAEACPAS-LLPQQLQWHAKAEEYDKLEELNLKDCIECGACAFVCP 87 Score = 34.3 bits (77), Expect = 6.0, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 19/43 (44%) Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + +Q ++ TR + ++CI CG C EACP Sbjct: 6 LPHSQVPITKTANCILAPTRHEISAHQYEMECIRCGQCAEACP 48 >gi|302343175|ref|YP_003807704.1| electron transport complex, RnfABCDGE type, B subunit [Desulfarculus baarsii DSM 2075] gi|301639788|gb|ADK85110.1| electron transport complex, RnfABCDGE type, B subunit [Desulfarculus baarsii DSM 2075] Length = 695 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 23/63 (36%), Gaps = 10/63 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C+ C CP AITI + H ID C CG C+ CP + I Sbjct: 134 CEIGCLGLGTCAKACPFGAITIGADNLPH----------IDPSLCTGCGTCERVCPKNII 183 Query: 119 VEG 121 Sbjct: 184 HLS 186 >gi|223983022|ref|ZP_03633230.1| hypothetical protein HOLDEFILI_00509 [Holdemania filiformis DSM 12042] gi|223965019|gb|EEF69323.1| hypothetical protein HOLDEFILI_00509 [Holdemania filiformis DSM 12042] Length = 264 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 17/87 (19%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + +CI C LC CPA + I+ G + + C++CG C+ CP A+ Sbjct: 16 EKNKCIGCSLCVKTCPAHNLKIQEGKA-----------QVILEDCLFCGQCEAVCPRKAV 64 Query: 119 VEGPNFEFATETRQELYYDKERLLNNG 145 + +KE LN G Sbjct: 65 T------VSGYDHAPQEKNKEERLNPG 85 >gi|223041610|ref|ZP_03611809.1| ferredoxin-type protein NapH-like protein [Actinobacillus minor 202] gi|223017585|gb|EEF15997.1| ferredoxin-type protein NapH-like protein [Actinobacillus minor 202] Length = 297 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 23/73 (31%), Gaps = 5/73 (6%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 ++ RC C C +CP R + + CI CG C + Sbjct: 222 IKVNVVDRNRCDRCMDCYNVCP-----EPQVLRLPLHGKPEDSQIVLSQDCISCGRCIDV 276 Query: 113 CPVDAIVEGPNFE 125 CP G FE Sbjct: 277 CPEKVFAFGSRFE 289 >gi|167745461|ref|ZP_02417588.1| hypothetical protein ANACAC_00152 [Anaerostipes caccae DSM 14662] gi|167655182|gb|EDR99311.1| hypothetical protein ANACAC_00152 [Anaerostipes caccae DSM 14662] Length = 572 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 25/100 (25%), Positives = 35/100 (35%), Gaps = 6/100 (6%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA---QAITIESGPRCHDGTRRT 93 PF+K + L R N +CI C C IC + SG + Sbjct: 122 PFKKEFVHKEWDKTFPLIRDAN---KCIKCMRCVQICDKVQGLNVWDVSGTGARTTVDVS 178 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 DI + C CG C CPV A+ E + ++ Sbjct: 179 RNRDIRVADCSLCGQCITHCPVGALRERDDTSMLFSALED 218 >gi|167377963|ref|XP_001734610.1| ABC transporter [Entamoeba dispar SAW760] gi|165903815|gb|EDR29244.1| ABC transporter, putative [Entamoeba dispar SAW760] Length = 651 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 29/82 (35%), Gaps = 4/82 (4%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L R +RC C C +G C + + R I CI C LC + Sbjct: 11 LDRIAVINDRCKP-GKCRLECKKTCPINRAGGLCIEVLPKDKRAVISETLCIGCALCVKK 69 Query: 113 CPVDAIVEGP---NFEFATETR 131 CP +AI N E T R Sbjct: 70 CPFEAIKIINLPKNLEQCTTHR 91 >gi|158521321|ref|YP_001529191.1| hypothetical protein Dole_1308 [Desulfococcus oleovorans Hxd3] gi|158510147|gb|ABW67114.1| protein of unknown function DUF362 [Desulfococcus oleovorans Hxd3] Length = 396 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 29/83 (34%), Gaps = 14/83 (16%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 + R L++ +E C+ C C ICP +AI E Sbjct: 306 RTVIYKYMRRMPVLKK----KETCVMCGDCFNICPNRAIVWEKQQTPVFEK--------- 352 Query: 100 MIKCIYCGLCQEACPVDAIVEGP 122 KC+ C C E CP A+ P Sbjct: 353 -EKCVSCLCCVECCPQQALEASP 374 >gi|154249960|ref|YP_001410785.1| hypothetical protein Fnod_1281 [Fervidobacterium nodosum Rt17-B1] gi|154153896|gb|ABS61128.1| protein of unknown function DUF39 [Fervidobacterium nodosum Rt17-B1] Length = 455 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 10/73 (13%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 E+ + E+ C+ C C ++C A+ + R VRYD Sbjct: 381 KIVDEPMRENYITLKSKIEKTCVNCGACVSLCSTNALYFDEN--------REVRYD--AS 430 Query: 102 KCIYCGLCQEACP 114 KC YC LC ++CP Sbjct: 431 KCTYCLLCSDSCP 443 >gi|116061992|dbj|BAF34631.1| reductive dehalogenase homologue [uncultured bacterium] Length = 486 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 21/78 (26%), Gaps = 4/78 (5%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE----SGPRCHDGTRRTVRYDI 98 G C C +C CP AI E Y Sbjct: 352 IPTDMPLAVTKPIDFGGFNFCKDCGICADTCPLGAIQKEDPTFEPQTPGFPVSGYEGYHT 411 Query: 99 DMIKCIYCGLCQEACPVD 116 D KC +C +C CP + Sbjct: 412 DYSKCPHCPVCMSVCPFN 429 >gi|52549176|gb|AAU83025.1| heterodisulfide reductase catalytic chain A [uncultured archaeon GZfos26D6] Length = 287 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 11/64 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C+ C CEAICP A+++E+G ++ + C CG C ACP AI Sbjct: 217 NEGICVGCGTCEAICPFDALSLEAG-----------VMHVNEVVCKGCGSCGSACPSGAI 265 Query: 119 VEGP 122 Sbjct: 266 TMRH 269 >gi|83590717|ref|YP_430726.1| ferredoxin hydrogenase [Moorella thermoacetica ATCC 39073] gi|83573631|gb|ABC20183.1| Ferredoxin hydrogenase [Moorella thermoacetica ATCC 39073] Length = 460 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 27/79 (34%), Gaps = 11/79 (13%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C C+ C ICP AI G I+ C+ CG C + C Sbjct: 1 MIYIDRDLCTGCRRCAEICPTGAIEGNQGEPQ----------IINREICVNCGQCVQICS 50 Query: 115 VDAIVEGPNFE-FATETRQ 132 A + E A + R+ Sbjct: 51 AYASPYTTSPETMAAKNRE 69 >gi|159115416|ref|XP_001707931.1| Nitroreductase Fd-NR2 [Giardia lamblia ATCC 50803] gi|157436039|gb|EDO80257.1| Nitroreductase Fd-NR2 [Giardia lamblia ATCC 50803] Length = 264 Score = 43.9 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 11/77 (14%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C C +C +CP + ++ + R CI+CG C CP ++I Sbjct: 11 DTCTGCNMCVEVCPTAVLKVDPETKVVAYANR--------DNCIFCGHCGAICPTESISM 62 Query: 121 GPNFEFATETRQELYYD 137 F E+ + Sbjct: 63 ---FGITPESEENAIKT 76 >gi|322806084|emb|CBZ03651.1| periplasmic [Fe] hydrogenase large subunit [Clostridium botulinum H04402 065] Length = 577 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 3/68 (4%) Query: 59 GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQEACPV 115 ++CI C+ C +C Q + S T T + I C +CG C CP Sbjct: 149 DMDKCILCRRCITMCNEVQTVGTLSAIGRGFETVVTPAFSEAIKNTNCTFCGQCVSVCPT 208 Query: 116 DAIVEGPN 123 A+ E N Sbjct: 209 GALTEVNN 216 >gi|297544307|ref|YP_003676609.1| Fe-S cluster domain-containing protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842082|gb|ADH60598.1| Fe-S cluster domain protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 435 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 23/68 (33%), Gaps = 11/68 (16%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 ++RC C C CP +AI + G I +CI CG C Sbjct: 1 MLYFHSVTLDKDRCRGCTNCIKRCPTEAIRVRDGKA-----------RIINERCIDCGEC 49 Query: 110 QEACPVDA 117 CP A Sbjct: 50 IRVCPYHA 57 >gi|294496384|ref|YP_003542877.1| hypothetical protein Mmah_1737 [Methanohalophilus mahii DSM 5219] gi|292667383|gb|ADE37232.1| protein of unknown function DUF362 [Methanohalophilus mahii DSM 5219] Length = 369 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 27/94 (28%), Positives = 36/94 (38%), Gaps = 20/94 (21%) Query: 34 INYPFEKG------STSPRFR---GEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84 I PF+K P G R ++C AC C CPA+AI +++G Sbjct: 276 ITVPFKKPGLSLLRMLPPWLIQKAGHLFTVRPEIDADKCTACGACVRNCPAEAIYMDNG- 334 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ID CI C C+E CP A+ Sbjct: 335 ----------HAVIDAGICILCYCCRELCPAAAV 358 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 15/36 (41%), Positives = 17/36 (47%) Query: 89 GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 G TVR +ID KC CG C CP +AI Sbjct: 300 GHLFTVRPEIDADKCTACGACVRNCPAEAIYMDNGH 335 >gi|288559375|ref|YP_003422861.1| CoB--CoM heterodisulfide reductase subunit A HdrA [Methanobrevibacter ruminantium M1] gi|288542085|gb|ADC45969.1| CoB--CoM heterodisulfide reductase subunit A HdrA [Methanobrevibacter ruminantium M1] Length = 660 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 7/64 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C AC++C +CP A++IE I++ C CG C ACP A+ Sbjct: 585 DTTVCGACEVCVELCPFGAVSIEGEGAD-------KHAAINVALCKGCGTCVGACPSGAM 637 Query: 119 VEGP 122 + Sbjct: 638 NQNH 641 Score = 40.9 bits (94), Expect = 0.069, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 24/72 (33%), Gaps = 7/72 (9%) Query: 61 ERCIACKLCEAICPAQAITIESGPR-------CHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + C C C+ +CP + + ID CI CGLC+ C Sbjct: 250 DDCTGCGQCQEVCPIEIPNYYDEGVGMVKAAYIPFPQAVPLCATIDKNYCIDCGLCETVC 309 Query: 114 PVDAIVEGPNFE 125 DAI E Sbjct: 310 GPDAIDRDMEPE 321 >gi|312200512|ref|YP_004020573.1| ferredoxin [Frankia sp. EuI1c] gi|311231848|gb|ADP84703.1| ferredoxin [Frankia sp. EuI1c] Length = 117 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 3/62 (4%) Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 C I + + G R+ I +CI CG C +CPVDAI + + A Sbjct: 9 CVDIMDQSCVEDCPIDCIYTGARKL---YIHPEECIDCGACARSCPVDAISWDRDLDPAD 65 Query: 129 ET 130 Sbjct: 66 PD 67 >gi|167837459|ref|ZP_02464342.1| formate dehydrogenase, alpha subunit [Burkholderia thailandensis MSMB43] Length = 984 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 25/85 (29%), Gaps = 10/85 (11%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T + + +C+ CG C Sbjct: 187 YFSYDPSKCIVCNRCVRACEETQGTFALTIAARGFESRVAASADEAFMDSECVSCGACVA 246 Query: 112 ACPVDAIVE-------GPNFEFATE 129 ACP +VE P E T Sbjct: 247 ACPTATLVEKSVVRLGQPEHEVVTT 271 >gi|167629043|ref|YP_001679542.1| 4fe-4S ferredoxin, iron-sulfur binding domain protein [Heliobacterium modesticaldum Ice1] gi|167591783|gb|ABZ83531.1| 4fe-4S ferredoxin, iron-sulfur binding domain protein [Heliobacterium modesticaldum Ice1] Length = 80 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 9/65 (13%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 ++ E+ CI C C IC A+ R + I+ C CG+C + CP Sbjct: 12 QFYRIEKHCIRCGFCLDICSWDALDAPGKGRA---------FTIEEDLCPGCGICVDCCP 62 Query: 115 VDAIV 119 V AI Sbjct: 63 VGAIQ 67 >gi|160935618|ref|ZP_02082993.1| hypothetical protein CLOBOL_00508 [Clostridium bolteae ATCC BAA-613] gi|158441362|gb|EDP19072.1| hypothetical protein CLOBOL_00508 [Clostridium bolteae ATCC BAA-613] Length = 262 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 23/56 (41%), Gaps = 11/56 (19%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C LC C AI +E+ ID KC CG C E CPV I Sbjct: 217 CIGCTLCTKQCEFDAIHMENNLAV-----------IDYEKCTNCGKCAEKCPVKVI 261 Score = 38.2 bits (87), Expect = 0.40, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 28/78 (35%), Gaps = 5/78 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCH-----DGTRRTVRYDIDMIKCIYCGLCQEAC 113 +E+C+AC C A CP I + H + + CI C LC + C Sbjct: 168 DKEKCVACGKCVASCPNHLIELVPYKAEHLVQCSSHDKGKDVKAVCAAGCIGCTLCTKQC 227 Query: 114 PVDAIVEGPNFEFATETR 131 DAI N + Sbjct: 228 EFDAIHMENNLAVIDYEK 245 >gi|150018812|ref|YP_001311066.1| ferredoxin hydrogenase [Clostridium beijerinckii NCIMB 8052] gi|149905277|gb|ABR36110.1| Ferredoxin hydrogenase [Clostridium beijerinckii NCIMB 8052] Length = 530 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 1/74 (1%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-IDMIKCIYCGLCQEACPV 115 +++CI C C C + + C+YCG C ACP Sbjct: 21 QINKKKCIGCTACAFTCAQETKMAILKEVDSGRKTVDTKSGGFGASGCLYCGQCTLACPT 80 Query: 116 DAIVEGPNFEFATE 129 +AI + + E Sbjct: 81 EAIDVRNDVDLVKE 94 Score = 37.4 bits (85), Expect = 0.70, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 21/63 (33%), Gaps = 10/63 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI+C C CP AI R + +C+ C LC C Sbjct: 394 QINENLCISCGTCIQNCPVNAIQYNVRGRAE----------VKEEECVGCKLCNNVCRAK 443 Query: 117 AIV 119 A+ Sbjct: 444 AVQ 446 >gi|148643520|ref|YP_001274033.1| energy-converting hydrogenase B, subunit K, EhbK [Methanobrevibacter smithii ATCC 35061] gi|148552537|gb|ABQ87665.1| energy-converting hydrogenase B, subunit K, EhbK [Methanobrevibacter smithii ATCC 35061] Length = 412 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 1/59 (1%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C+ C+ C ICP G + + + I + C+ CG C E CPV AI Sbjct: 104 FCVMCQQCVEICPLD-YVGIEGIKDPNHRELNIEGPIYIENCVGCGTCIEECPVQAISL 161 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 26/65 (40%), Gaps = 1/65 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C +C CP A+ S T+ + ++ CI C C E CP D I Sbjct: 171 NSEICIKCGVCSQTCPWNAVF-ISEKIPTKRTKEITEFKLNESSCIGCKTCVEICPGDFI 229 Query: 119 VEGPN 123 N Sbjct: 230 KFNTN 234 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 2/66 (3%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM--IKCIYCGLCQEACPVDA 117 + CI C C + CP A+T+++ + R I KC CG C +CP + Sbjct: 320 FKSCIRCGACASSCPNNALTLDTEFEINKNGTLIKRPRIQYNPSKCDQCGDCVNSCPYNM 379 Query: 118 IVEGPN 123 + N Sbjct: 380 LKTTDN 385 Score = 42.0 bits (97), Expect = 0.031, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 26/69 (37%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 E+C C CP QAI + + + D CI CG C +CP +A Sbjct: 278 CDAEKCDHIGACAMKCPTQAIHVVTKTGMSVPEQIKSDEDPLFKSCIRCGACASSCPNNA 337 Query: 118 IVEGPNFEF 126 + FE Sbjct: 338 LTLDTEFEI 346 Score = 38.9 bits (89), Expect = 0.23, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 4/87 (4%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKL---CEAICPAQAITIESGPRCHDGTRRTVRY 96 K +A++ PN C C C ICP A+ ++ +G + R Sbjct: 11 KCEACEGICPSNAIKVQPNNIIHCDTCGDSPKCAEICPNDALKVDF-LTLEEGGAQQARL 69 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPN 123 + +KC CG C E CP + I N Sbjct: 70 IFNGLKCDQCGKCVETCPQNTITLTNN 96 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 9/61 (14%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E C+ C C CP QAI++ +I+ CI CG+C + CP +A+ Sbjct: 142 ENCVGCGTCIEECPVQAISLNELGEP---------IEINSEICIKCGVCSQTCPWNAVFI 192 Query: 121 G 121 Sbjct: 193 S 193 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 1/76 (1%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103 F + + C AC LCE +C AI++ D KC Sbjct: 225 PGDFIKFNTNNLTITLPKMCAACGLCEKMCSVNAISLNVKLHDATPCTEEGVV-CDAEKC 283 Query: 104 IYCGLCQEACPVDAIV 119 + G C CP AI Sbjct: 284 DHIGACAMKCPTQAIH 299 Score = 35.1 bits (79), Expect = 3.5, Method: Composition-based stats. Identities = 14/62 (22%), Positives = 18/62 (29%), Gaps = 11/62 (17%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 +C C C CP + P+ C CG C E CP Sbjct: 359 QYNPSKCDQCGDCVNSCPYNMLKTTDNPKLPI-----------AGFCTLCGQCIETCPEK 407 Query: 117 AI 118 A+ Sbjct: 408 AL 409 >gi|325845872|ref|ZP_08169070.1| ferredoxin hydrogenase [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481778|gb|EGC84810.1| ferredoxin hydrogenase [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 577 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 3/68 (4%) Query: 59 GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQEACPV 115 +CI C+ CE +C Q + + T ++ + C +CG C CP Sbjct: 147 DPNKCILCRRCETMCNTVQTVGALAEVGRGFNTHVGSTFNRSMFETTCTFCGQCLSVCPT 206 Query: 116 DAIVEGPN 123 A+ E N Sbjct: 207 GALTEKSN 214 >gi|323349362|gb|EGA83587.1| Rli1p [Saccharomyces cerevisiae Lalvin QA23] Length = 583 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 3/68 (4%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP---N 123 K C C +++G C + T + I I CI CG+C + CP DAI N Sbjct: 19 KKCRQECKRSCPVVKTGKLCIEVTPTSKIAFISEILCIGCGICVKKCPFDAIQIINLPTN 78 Query: 124 FEFATETR 131 E R Sbjct: 79 LEAHVTHR 86 >gi|319940502|ref|ZP_08014847.1| formate dehydrogenase [Sutterella wadsworthensis 3_1_45B] gi|319806128|gb|EFW02877.1| formate dehydrogenase [Sutterella wadsworthensis 3_1_45B] Length = 906 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 21/65 (32%), Gaps = 3/65 (4%) Query: 59 GEERCIACKLCEAICPAQAITIE--SGPRCHDGTRRTVRYDIDMI-KCIYCGLCQEACPV 115 CI C+ C C A +G R + + C CG C ACP Sbjct: 146 NPALCIRCQRCVGACNNAAGNHTLITGRRGVRTSILAPFAEDWKSTNCESCGNCAGACPT 205 Query: 116 DAIVE 120 AI Sbjct: 206 GAITM 210 >gi|317476662|ref|ZP_07935906.1| 4Fe-4S binding domain-containing protein [Bacteroides eggerthii 1_2_48FAA] gi|316907125|gb|EFV28835.1| 4Fe-4S binding domain-containing protein [Bacteroides eggerthii 1_2_48FAA] Length = 502 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 8/80 (10%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIA------CKLCEAICPAQAITIESGPRCHDGTRRTV 94 + + + +E CI C C CP AI + + + +R+ Sbjct: 407 RPITKADKSAIQIGHAVWIKENCICITDDVECGNCARHCPVGAIQMVASDPENPESRKIP 466 Query: 95 RYDIDMIKCIYCGLCQEACP 114 ++ +CI CG C+ CP Sbjct: 467 V--VNTERCIGCGACENLCP 484 Score = 40.9 bits (94), Expect = 0.060, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 27/84 (32%), Gaps = 5/84 (5%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100 +S R Y G R C C +CPA AI + + + Sbjct: 370 RPSSDLTRLMQPEMSYERGYCR-PECTKCAEVCPAGAIRPITKADKSAIQIGHAVWIKEN 428 Query: 101 IKCI----YCGLCQEACPVDAIVE 120 CI CG C CPV AI Sbjct: 429 CICITDDVECGNCARHCPVGAIQM 452 Score = 37.0 bits (84), Expect = 0.89, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 13/78 (16%) Query: 47 FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 F +++L + +C C LC C A I ++ ++ID +C+ C Sbjct: 210 FLSKYSLFKPVIDTTKCNGCGLCARNCKASCINSKA-------------HEIDYSRCVAC 256 Query: 107 GLCQEACPVDAIVEGPNF 124 C + C AI Sbjct: 257 MDCLDKCKQGAITYTRRH 274 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 34/112 (30%), Gaps = 3/112 (2%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 +K N + C AC+LC ++CP Q + S + Sbjct: 329 EKKIPERATAITPPGSMSARNFAQHCTACQLCVSVCPNQVLRPSSDLTRLMQPEMSYERG 388 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWE 149 +C C E CP AI + + + KE + D E Sbjct: 389 YCRPECTK---CAEVCPAGAIRPITKADKSAIQIGHAVWIKENCICITDDVE 437 >gi|312127727|ref|YP_003992601.1| aldo/keto reductase [Caldicellulosiruptor hydrothermalis 108] gi|311777746|gb|ADQ07232.1| aldo/keto reductase [Caldicellulosiruptor hydrothermalis 108] Length = 315 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 23/115 (20%), Positives = 44/115 (38%), Gaps = 11/115 (9%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 F+ + F+F ++ + + ++ F+ I EK + E+ + + E C Sbjct: 209 FKRALEFIFEFPYLHSVAIGMQSIFEVDYNIRCFEEKKVYLEKELLENIKTKKLHVESWC 268 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C C A++++ G +D KC+ CG C C A+ Sbjct: 269 EGCGECVLHCHQNALSVKDGKVF-----------VDYSKCLCCGYCSSYCKFFAL 312 >gi|302342419|ref|YP_003806948.1| methyl-viologen-reducing hydrogenase subunit delta [Desulfarculus baarsii DSM 2075] gi|301639032|gb|ADK84354.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfarculus baarsii DSM 2075] Length = 745 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 22/63 (34%), Gaps = 10/63 (15%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 +RC CK C CP AI + + +C CG+C ACP I Sbjct: 536 MQRCTQCKRCTEECPFGAINEDEKANPLP----------NPTRCRRCGVCMGACPERIIS 585 Query: 120 EGP 122 Sbjct: 586 FKN 588 Score = 35.1 bits (79), Expect = 3.1, Method: Composition-based stats. Identities = 22/99 (22%), Positives = 30/99 (30%), Gaps = 4/99 (4%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 L+Y I +P+E T G I + A+ QAI Sbjct: 461 TLKYAMPDSHFICFPYESRRTGIYPVGTVRRPMRLTQA---IDDGVGAALKAIQAIKAAE 517 Query: 83 GPRCHDGTRRTVRY-DIDMIKCIYCGLCQEACPVDAIVE 120 + + M +C C C E CP AI E Sbjct: 518 AGCAVHPRSGDESFPEFFMQRCTQCKRCTEECPFGAINE 556 >gi|294494960|ref|YP_003541453.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta domain protein [Methanohalophilus mahii DSM 5219] gi|292665959|gb|ADE35808.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein [Methanohalophilus mahii DSM 5219] Length = 638 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 19/75 (25%), Positives = 24/75 (32%), Gaps = 11/75 (14%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 G E +C C C +C AI+IE G I+ Sbjct: 498 VRDHDIGIMGQLMPVIDETKCTGCGRCTELCKFNAISIEGGKAV-----------INRDL 546 Query: 103 CIYCGLCQEACPVDA 117 C CG C CP +A Sbjct: 547 CGNCGWCVRGCPHEA 561 Score = 34.7 bits (78), Expect = 4.1, Method: Composition-based stats. Identities = 12/41 (29%), Positives = 15/41 (36%) Query: 78 ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + G + ID KC CG C E C +AI Sbjct: 493 NSCVRVRDHDIGIMGQLMPVIDETKCTGCGRCTELCKFNAI 533 >gi|293401894|ref|ZP_06646034.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304552|gb|EFE45801.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 1174 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 29/95 (30%), Gaps = 20/95 (21%) Query: 51 HALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRY 96 A++ E CI C +C +CP A + ++Y Sbjct: 684 IAVQVPTWHPENCIQCGICSFVCPHATIRPFLLTDEEVANAPMEFKTIQAMGKGVENLKY 743 Query: 97 DID--MIKCIYCGLCQEACPV----DAIVEGPNFE 125 I C+ CGLC CP A+ E Sbjct: 744 RIQVTPANCVGCGLCAVECPGKGGNKALEMVDINE 778 >gi|289578084|ref|YP_003476711.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermoanaerobacter italicus Ab9] gi|297544357|ref|YP_003676659.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|289527797|gb|ADD02149.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermoanaerobacter italicus Ab9] gi|296842132|gb|ADH60648.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 56 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 11/64 (17%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + CI+C C A CP AI G Y+ID CI CG C+ CP Sbjct: 1 MAHYITDECISCGACAAECPVDAIHEGDGK-----------YEIDPDTCIDCGACEAVCP 49 Query: 115 VDAI 118 A+ Sbjct: 50 TGAV 53 >gi|194332908|ref|YP_002014768.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Prosthecochloris aestuarii DSM 271] gi|194310726|gb|ACF45121.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Prosthecochloris aestuarii DSM 271] Length = 515 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 21/85 (24%), Positives = 28/85 (32%), Gaps = 16/85 (18%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 EKG R LR + C+ ICP +A+ R Sbjct: 41 EKGKFPDTRRYFTVLRCNHCEDPPCV------NICPVEALQKREDGIVDFDKR------- 87 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPN 123 +CI C C +ACP A+ P Sbjct: 88 ---RCIGCKACGQACPYGALYIDPE 109 Score = 40.9 bits (94), Expect = 0.058, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 17/97 (17%) Query: 56 YPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTRRTVRYDIDMIKCIYCGL-- 108 + +CI C C C ++ G R +++C +C Sbjct: 5 FVIDGRKCIGCHACTVGCKSENQVPLGVNRTWVKYVEKGKFPDTRRYFTVLRCNHCEDPP 64 Query: 109 CQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNG 145 C CPV+A+ R++ D ++ G Sbjct: 65 CVNICPVEALQ----------KREDGIVDFDKRRCIG 91 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 24/70 (34%), Gaps = 4/70 (5%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + RCI CK C CP A+ I+ +K C CP AI Sbjct: 85 DKRRCIGCKACGQACPYGALYIDPESHTSAKCNYCAHRKEVGMK----PACVVICPQQAI 140 Query: 119 VEGPNFEFAT 128 V G + + Sbjct: 141 VSGDLDDPHS 150 >gi|183233096|ref|XP_001913806.1| RNAseL inhibitor-like protein [Entamoeba histolytica HM-1:IMSS] gi|169801731|gb|EDS89415.1| RNAseL inhibitor-like protein, putative [Entamoeba histolytica HM-1:IMSS] Length = 651 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 29/82 (35%), Gaps = 4/82 (4%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L R +RC C C +G C + + R I CI C LC + Sbjct: 11 LDRIAVINDRCKP-GKCRLECKKTCPINRAGGLCIEVLPKDKRAVISETLCIGCALCVKK 69 Query: 113 CPVDAIVEGP---NFEFATETR 131 CP +AI N E T R Sbjct: 70 CPFEAIKIINLPKNLEQCTTHR 91 >gi|154497070|ref|ZP_02035766.1| hypothetical protein BACCAP_01363 [Bacteroides capillosus ATCC 29799] gi|150273469|gb|EDN00597.1| hypothetical protein BACCAP_01363 [Bacteroides capillosus ATCC 29799] Length = 266 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 5/69 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGP-----RCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + C+ C LCE +CP I + RC + R D+ CI C C + C Sbjct: 167 DRDACVGCGLCEKVCPNHVIGVFPKKQKVFDRCSNYNRGKAVMDVCKAGCIGCTKCSKVC 226 Query: 114 PVDAIVEGP 122 P AI Sbjct: 227 PEGAITMDN 235 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 18/86 (20%), Positives = 31/86 (36%), Gaps = 11/86 (12%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 +P ++ + CI C C +CP AIT+++ Sbjct: 189 FPKKQKVFDRCSNYNRGKAVMDVCKAGCIGCTKCSKVCPEGAITMDNCLA---------- 238 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEG 121 ++ +KC CG C E+CP + Sbjct: 239 -QVNPMKCTGCGTCVESCPTGCMSFT 263 >gi|19113524|ref|NP_596732.1| iron-sulfur protein [Schizosaccharomyces pombe 972h-] gi|74676038|sp|O60102|YOX6_SCHPO RecName: Full=Uncharacterized ABC transporter ATP-binding protein C14F5.06 gi|3184109|emb|CAA19324.1| iron-sulfur protein [Schizosaccharomyces pombe] Length = 593 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 20/56 (35%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 K C C + +G C + I CI CG+C + CP AI Sbjct: 19 KKCRQECRRSCPVVRTGKLCIEVNPTDRIAFISETLCIGCGICVKKCPFGAINIIN 74 >gi|45358921|ref|NP_988478.1| ferredoxin [Methanococcus maripaludis S2] gi|45047787|emb|CAF30914.1| ferredoxin [Methanococcus maripaludis S2] Length = 132 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 10/62 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E+CI C C CP A++++ + +D +CI C C + CPV+AI Sbjct: 78 DDEKCIDCGACVVHCPVGALSVDEEFKIL----------LDEDECIGCKNCAKICPVNAI 127 Query: 119 VE 120 Sbjct: 128 KI 129 Score = 33.9 bits (76), Expect = 7.6, Method: Composition-based stats. Identities = 11/24 (45%), Positives = 12/24 (50%) Query: 101 IKCIYCGLCQEACPVDAIVEGPNF 124 KCI CG C CPV A+ F Sbjct: 80 EKCIDCGACVVHCPVGALSVDEEF 103 >gi|85682156|sp|P80491|FRHG_METBF RecName: Full=Coenzyme F420 hydrogenase subunit gamma; AltName: Full=8-hydroxy-5-deazaflavin-reducing hydrogenase subunit gamma; Short=FRH gi|2463281|emb|CAA74092.1| F420-reducing hydrogenase isoenzyme II gamma subunit [Methanosarcina barkeri] Length = 259 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 28/75 (37%), Gaps = 13/75 (17%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L + C+ C C A CP AIT+E G + CI CG C A Sbjct: 179 LMYDVINQGLCMGCGTCAASCPVHAITLEFGK-----------PQGERDLCIKCGSCYGA 227 Query: 113 CP--VDAIVEGPNFE 125 CP + P FE Sbjct: 228 CPRSFFNLDVIPEFE 242 Score = 37.8 bits (86), Expect = 0.47, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%) Query: 80 IESGPRCHDGTRRTVRYD-IDMIKCIYCGLCQEACPVDAIVE 120 ++ R G + YD I+ C+ CG C +CPV AI Sbjct: 165 MDLAKRGTSGCFCDLMYDVINQGLCMGCGTCAASCPVHAITL 206 >gi|323705128|ref|ZP_08116704.1| Glutamate synthase (NADPH) [Thermoanaerobacterium xylanolyticum LX-11] gi|323535554|gb|EGB25329.1| Glutamate synthase (NADPH) [Thermoanaerobacterium xylanolyticum LX-11] Length = 501 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 18/106 (16%), Positives = 37/106 (34%), Gaps = 14/106 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++CI CK+C C + + + KC+ C C CP A+ Sbjct: 15 DYDKCINCKVCMRQCANEVHSYDEDLGKMVADDY---------KCVNCQRCVVMCPTHAL 65 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWES--EIVRNIVTDSPY 162 + R+ + + + + + E+ ++ + D PY Sbjct: 66 TIVKH---PQVFRENANWTYDAIRDIYRQAETGGVLLSAMGNDRPY 108 >gi|302339910|ref|YP_003805116.1| methyl-accepting chemotaxis sensory transducer [Spirochaeta smaragdinae DSM 11293] gi|301637095|gb|ADK82522.1| methyl-accepting chemotaxis sensory transducer [Spirochaeta smaragdinae DSM 11293] Length = 702 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 10/69 (14%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E +C+ C C A CP + SG I CI CG C EAC + Sbjct: 10 QIDESKCVNCHACIAACPVKYCIDGSG----------STVTIHHDLCIGCGKCIEACTHN 59 Query: 117 AIVEGPNFE 125 A + E Sbjct: 60 ARSVVDDTE 68 >gi|270308729|ref|YP_003330787.1| reductive dehalogenase [Dehalococcoides sp. VS] gi|270154621|gb|ACZ62459.1| reductive dehalogenase [Dehalococcoides sp. VS] Length = 532 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 12/69 (17%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC----------IY 105 N E C CKLC +CP QAI+ + P+ +R R++ ++ KC + Sbjct: 390 DFNLAEFCSRCKLCAQVCPTQAISYDDKPKFEIYGQR--RFNTNLAKCRDGWNLGAGPMG 447 Query: 106 CGLCQEACP 114 C C CP Sbjct: 448 CRACISVCP 456 Score = 35.5 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 2/31 (6%) Query: 103 CIYCGLCQEACPVDAIVEG--PNFEFATETR 131 C C LC + CP AI P FE + R Sbjct: 397 CSRCKLCAQVCPTQAISYDDKPKFEIYGQRR 427 >gi|153940304|ref|YP_001391107.1| [Fe] hydrogenase [Clostridium botulinum F str. Langeland] gi|152936200|gb|ABS41698.1| iron hydrogenase 1 [Clostridium botulinum F str. Langeland] gi|295319153|gb|ADF99530.1| iron hydrogenase 1 [Clostridium botulinum F str. 230613] Length = 577 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 3/68 (4%) Query: 59 GEERCIACKLCEAICPAQAITIE---SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 ++CI C+ C +C G I C +CG C CP Sbjct: 149 DMDKCILCRRCITMCNEVQTVGTLSAIGRGFETVVAPAFSEAIKNTNCTFCGQCVSVCPT 208 Query: 116 DAIVEGPN 123 A+ E N Sbjct: 209 GALTEVNN 216 >gi|20092251|ref|NP_618326.1| sulfite reductase, beta subunit [Methanosarcina acetivorans C2A] gi|19917487|gb|AAM06806.1| sulfite reductase, beta subunit [Methanosarcina acetivorans C2A] Length = 288 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 34/91 (37%), Gaps = 12/91 (13%) Query: 28 FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH 87 FK T P G + EE C+ CKLCE C AIT+ Sbjct: 137 FKVAVT-GCPAACVRPQENDFGVMGTVKPEILEENCVGCKLCEKACKVGAITVLDDK--- 192 Query: 88 DGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ID+ KCI CG C AC DA+ Sbjct: 193 --------IRIDLEKCILCGACIAACRKDAL 215 >gi|56478444|ref|YP_160033.1| hypothetical protein ebA5294 [Aromatoleum aromaticum EbN1] gi|56314487|emb|CAI09132.1| subunit of oxidoreductase of unknown function, conserved in Azoarcus-type benzoate degradation gene clusters [Aromatoleum aromaticum EbN1] Length = 853 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 22/71 (30%), Gaps = 6/71 (8%) Query: 55 RYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDIDMIK----CIYCGL 108 + CI C+ C C +E +RT I C +C Sbjct: 192 FFDRDYNLCIDCRRCLVACNDVRGVGCLEVKEVETPQGKRTYVGTIAPTLIESGCTFCQA 251 Query: 109 CQEACPVDAIV 119 C CP A++ Sbjct: 252 CVTVCPTGALM 262 >gi|66828195|ref|XP_647452.1| dihydropyrimidine dehydrogenase [Dictyostelium discoideum AX4] gi|74859332|sp|Q55FT1|DPYD_DICDI RecName: Full=Dihydropyrimidine dehydrogenase [NADP+]; Short=DHPDHase; Short=DPD; AltName: Full=Dihydrothymine dehydrogenase; AltName: Full=Dihydrouracil dehydrogenase gi|60475501|gb|EAL73436.1| dihydropyrimidine dehydrogenase [Dictyostelium discoideum AX4] Length = 1009 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 19/75 (25%), Gaps = 8/75 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117 E++CI C C C + C C LC CPV Sbjct: 937 DEDKCINCGKCYMTCN-------DSGYQAIKFDGKTHIPLVTDLCTGCDLCLSVCPVPDC 989 Query: 118 IVEGPNFEFATETRQ 132 I P R Sbjct: 990 ITMVPRETIYVPDRG 1004 >gi|312878995|ref|ZP_07738795.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Aminomonas paucivorans DSM 12260] gi|310782286|gb|EFQ22684.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Aminomonas paucivorans DSM 12260] Length = 585 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 3/67 (4%) Query: 59 GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115 ++C+ C+ CE +C Q + + SG + ++ + + C +CG C CP Sbjct: 147 DMDKCVMCRRCETMCNEVQTVGVLSGVNRGFTSVVAPAFEKPLEESVCTFCGQCAAVCPT 206 Query: 116 DAIVEGP 122 A+VE Sbjct: 207 GALVERD 213 >gi|301168533|emb|CBW28123.1| putative oxidoreductase [Bacteriovorax marinus SJ] Length = 143 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C++C A CP +I + +GP + + +ID+ +CI C C + CP + I Sbjct: 35 HQSGCTGCEVCIAGCPVDSIELVAGPNPDNPEFKQTV-EIDLARCIGCQNCSQDCPWETI 93 Query: 119 VEGP 122 Sbjct: 94 TMYN 97 >gi|300087813|ref|YP_003758335.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527546|gb|ADJ26014.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 1119 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 3/58 (5%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C C C CP AI++ + + + + D ++C CG+C CP I Sbjct: 1045 ENCDGCAYCVDPCPYDAISLIEYRKNGETKK---TVEADPMRCHGCGVCMATCPKQGI 1099 >gi|291562108|emb|CBL40924.1| Uncharacterized Fe-S center protein [butyrate-producing bacterium SS3/4] Length = 373 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 24/62 (38%), Gaps = 12/62 (19%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C C C + AIT + ID KC CG C AC DAI P Sbjct: 197 CRGCGRCAKECGSDAITYVNKKAV-----------IDYDKCKGCGRCIGACSFDAIYN-P 244 Query: 123 NF 124 N+ Sbjct: 245 NY 246 >gi|255505769|ref|ZP_05348062.3| iron-sulfur cluster-binding protein [Bryantella formatexigens DSM 14469] gi|255265964|gb|EET59169.1| iron-sulfur cluster-binding protein [Bryantella formatexigens DSM 14469] Length = 325 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 15/69 (21%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + E++C+ C+ C +C D +CI CG C++A Sbjct: 221 IYHLEVDEKKCVGCQKCAHVCKMD---------------VDPVKHPDSAECIRCGECRDA 265 Query: 113 CPVDAIVEG 121 CPV AI G Sbjct: 266 CPVQAIHLG 274 >gi|224370292|ref|YP_002604456.1| putative NADPH-dependent glutamate synthase [Desulfobacterium autotrophicum HRM2] gi|223693009|gb|ACN16292.1| putative NADPH-dependent glutamate synthase [Desulfobacterium autotrophicum HRM2] Length = 690 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 10/62 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + CI C C A+++ +D KC+ CG CQ+ACP D Sbjct: 131 RDCHVGCIGLGDCIKACKFGALSMGPKGHP----------IVDDDKCVGCGACQKACPKD 180 Query: 117 AI 118 I Sbjct: 181 II 182 >gi|212696951|ref|ZP_03305079.1| hypothetical protein ANHYDRO_01514 [Anaerococcus hydrogenalis DSM 7454] gi|212676039|gb|EEB35646.1| hypothetical protein ANHYDRO_01514 [Anaerococcus hydrogenalis DSM 7454] Length = 577 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 3/68 (4%) Query: 59 GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQEACPV 115 +CI C+ CE +C Q + + T ++ + C +CG C CP Sbjct: 147 DPNKCILCRRCETMCNTVQTVGALAEVGRGFNTHVGSTFNRSMFETTCTFCGQCLSVCPT 206 Query: 116 DAIVEGPN 123 A+ E N Sbjct: 207 GALTEKSN 214 >gi|167756604|ref|ZP_02428731.1| hypothetical protein CLORAM_02141 [Clostridium ramosum DSM 1402] gi|167702779|gb|EDS17358.1| hypothetical protein CLORAM_02141 [Clostridium ramosum DSM 1402] Length = 251 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 32/100 (32%), Gaps = 12/100 (12%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 +YF + K T F G + F + + E+ CI C C CP + I++ Sbjct: 145 AGKYFLETKPTFIGRFNSGIVNRLFYPMFVRAKGFHVEDTCIGCGQCIHACPLKNISLVD 204 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 I C C C CP AI Sbjct: 205 SRP------------IWDEHCTQCMACISICPKAAIEYKN 232 >gi|78187416|ref|YP_375459.1| sulfite reductase, beta subunit [Chlorobium luteolum DSM 273] gi|78167318|gb|ABB24416.1| sulfite reductase, beta subunit [Chlorobium luteolum DSM 273] Length = 319 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 4/69 (5%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 G + +C C C + CP AI+ D Y +D +CI Sbjct: 150 ENDVGIRGVVEPEWIGPQCNDCGKCLSYCPVDAISRSGRAARDD----QFTYSVDEKRCI 205 Query: 105 YCGLCQEAC 113 CGLC C Sbjct: 206 GCGLCASKC 214 >gi|24216977|ref|NP_714458.1| metal (Ni/Fe) hydrogenase small subunit [Leptospira interrogans serovar Lai str. 56601] gi|24198376|gb|AAN51476.1| metal (Ni/Fe) hydrogenase small subunit [Leptospira interrogans serovar Lai str. 56601] Length = 273 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 28/114 (24%), Positives = 42/114 (36%), Gaps = 15/114 (13%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 F++ T+NY +P RG N C+ CK CE +CP ++ I S + Sbjct: 9 NIFRSAKTMNYKKV-SPLNPNARGIPIPVLSSNE--SCLTCKSCEQVCPTHSLKIISKDK 65 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL--YYD 137 D C+ CG C E C I++ + R+ L Y Sbjct: 66 MSF----------DYGACLQCGKCSEVCSNGKIIDSGFVHVYSTDRETLQVVYT 109 >gi|219669794|ref|YP_002460229.1| 4Fe-4S ferredoxin iron-sulphur binding, conserved site [Desulfitobacterium hafniense DCB-2] gi|219540054|gb|ACL21793.1| 4Fe-4S ferredoxin, iron-sulphur binding, conserved site [Desulfitobacterium hafniense DCB-2] Length = 310 Score = 43.5 bits (101), Expect = 0.008, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 29/83 (34%), Gaps = 7/83 (8%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-- 96 E+ + LR +CI C C A C A A G + + Sbjct: 128 ERRRLPIEDSNPYILR----DLNKCILCGKCVATCEAVAERSVIGFVNRGFHAKVATFMD 183 Query: 97 -DIDMIKCIYCGLCQEACPVDAI 118 D+ C+YC C CPV A+ Sbjct: 184 TDLKDSTCVYCNRCVAVCPVGAL 206 >gi|301060428|ref|ZP_07201287.1| glycyl-radical enzyme activating family protein [delta proteobacterium NaphS2] gi|300445482|gb|EFK09388.1| glycyl-radical enzyme activating family protein [delta proteobacterium NaphS2] Length = 301 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 28/83 (33%), Gaps = 22/83 (26%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRR----------------------TVR 95 + ++C+ C C ++CP +AI + + Sbjct: 2 HDTDKCVRCGTCVSVCPEEAIAPPGKRQVENNHSASDSACCLPDGGATETYTQDISDVRP 61 Query: 96 YDIDMIKCIYCGLCQEACPVDAI 118 ID KC C C E CP DAI Sbjct: 62 PQIDRSKCTLCMKCVEVCPQDAI 84 >gi|319760752|ref|YP_004124689.1| 4fe-4S ferredoxin iron-sulfur binding domain-containing protein [Alicycliphilus denitrificans BC] gi|330822672|ref|YP_004385975.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Alicycliphilus denitrificans K601] gi|317115313|gb|ADU97801.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Alicycliphilus denitrificans BC] gi|329308044|gb|AEB82459.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Alicycliphilus denitrificans K601] Length = 94 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 2/62 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +RC C C A CP ++++ G +R+V +D C C LC CP DAI Sbjct: 16 DPDRCTGCGWCVAACPPHVLSLQVQGMERFGAKRSVLHD--APGCTGCALCALRCPFDAI 73 Query: 119 VE 120 Sbjct: 74 RM 75 >gi|299146147|ref|ZP_07039215.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides sp. 3_1_23] gi|298516638|gb|EFI40519.1| electron transport complex, RnfABCDGE type, B subunit [Bacteroides sp. 3_1_23] Length = 288 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 9/65 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C C A C AI + ++D KC CG C +ACP I Sbjct: 138 CSYGCLGCGDCVAACQFDAIHMNPETGLP---------EVDEAKCTACGACVKACPKAII 188 Query: 119 VEGPN 123 P Sbjct: 189 EIRPQ 193 Score = 40.5 bits (93), Expect = 0.072, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 8/76 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCH--------DGTRRTVRYDIDMIKCIYCGLCQ 110 E +C AC C CP I I + + + V + CI CG C Sbjct: 169 DEAKCTACGACVKACPKAIIEIRPQGKKSRRVYISCVNKDKGAVARKACTVSCIGCGKCV 228 Query: 111 EACPVDAIVEGPNFEF 126 + CP +AI N + Sbjct: 229 KTCPFEAITLENNLAY 244 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 11/62 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C C CP +AIT+E+ ID KC C C E CP + I Sbjct: 217 CTVSCIGCGKCVKTCPFEAITLENNLAY-----------IDPHKCKSCRKCVEVCPQNTI 265 Query: 119 VE 120 +E Sbjct: 266 IE 267 >gi|257076761|ref|ZP_05571122.1| indolepyruvate oxidoreductase, alpha subunit [Ferroplasma acidarmanus fer1] Length = 628 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 27/72 (37%), Gaps = 13/72 (18%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 H + Y +++C C C AI+IE G ID C CG+ Sbjct: 564 KTHRVITYTVNQDKCGKCMNCVENFACPAISIEGG-----------NIKIDSNICDGCGV 612 Query: 109 CQE--ACPVDAI 118 C E CP AI Sbjct: 613 CAEPYVCPFKAI 624 >gi|257095916|ref|YP_003169557.1| RnfABCDGE type electron transport complex subunit B [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257048440|gb|ACV37628.1| electron transport complex, RnfABCDGE type, B subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 181 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 10/60 (16%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C C +CP AI + +++ C CG C + CP +A++ P Sbjct: 110 CIGCCRCSKVCPTDAIVGAAKQ----------IHNVIREACTGCGNCIDRCPTEALLLQP 159 >gi|304317042|ref|YP_003852187.1| nitrite and sulphite reductase 4Fe-4S region [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778544|gb|ADL69103.1| nitrite and sulphite reductase 4Fe-4S region [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 290 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 25/88 (28%), Positives = 30/88 (34%), Gaps = 11/88 (12%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P G E+ C C LC +C +AITI+ D Sbjct: 141 CPNNCTKPQFNDIGFQGQVEPELSEDLCTGCGLCADVCDVKAITIKDNLARRD------- 193 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPN 123 KCIYCG C CP+DA N Sbjct: 194 ----DDKCIYCGSCIRVCPMDAWKRKRN 217 Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 1/50 (2%) Query: 75 AQAITIESGPRC-HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + + P+ G + V ++ C CGLC + C V AI N Sbjct: 139 SGCPNNCTKPQFNDIGFQGQVEPELSEDLCTGCGLCADVCDVKAITIKDN 188 >gi|258516688|ref|YP_003192910.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfotomaculum acetoxidans DSM 771] gi|257780393|gb|ACV64287.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfotomaculum acetoxidans DSM 771] Length = 736 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 20/64 (31%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RC CK C CP AI + + +C CG C ACP I Sbjct: 525 NMNRCTQCKRCTEECPFGAINEDEKGNPLP----------NPTRCRRCGTCMGACPERII 574 Query: 119 VEGP 122 Sbjct: 575 SFKN 578 Score = 33.9 bits (76), Expect = 7.5, Method: Composition-based stats. Identities = 10/28 (35%), Positives = 13/28 (46%) Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + +M +C C C E CP AI E Sbjct: 519 MSYPEFNMNRCTQCKRCTEECPFGAINE 546 >gi|193083887|gb|ACF09566.1| 4Fe-4S ferredoxin iron-sulfur binding protein [uncultured marine group II euryarchaeote KM3-72-G3] Length = 490 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 26/91 (28%), Positives = 30/91 (32%), Gaps = 16/91 (17%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 T EKG+ R R C CE A P TR Sbjct: 56 THVKYIEKGTYPDVTREFSVHR-----------CNHCE-----DAPCTTICPTTALFTRE 99 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 D D +CI C C +ACP DA+ PN Sbjct: 100 DGIVDFDDDRCIGCKSCMQACPYDALYIDPN 130 Score = 42.0 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 4/64 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++RCI CK C CP A+ I+ Y C CPV+AI Sbjct: 106 DDDRCIGCKSCMQACPYDALYIDPNKGTAAKCNYCAHRIEHS----YEPSCVVVCPVEAI 161 Query: 119 VEGP 122 + G Sbjct: 162 ISGD 165 Score = 41.6 bits (96), Expect = 0.038, Method: Composition-based stats. Identities = 20/108 (18%), Positives = 32/108 (29%), Gaps = 17/108 (15%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTRRTV 94 KG P + +CI C C C ++ GT V Sbjct: 10 KGPVRPHRGRTMVNYGFVIDNRKCIGCHACTVACKSEHDVPIGVNRTHVKYIEKGTYPDV 69 Query: 95 RYDIDMIKCIYC--GLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140 + + +C +C C CP A+ TR++ D + Sbjct: 70 TREFSVHRCNHCEDAPCTTICPTTAL----------FTREDGIVDFDD 107 >gi|167747433|ref|ZP_02419560.1| hypothetical protein ANACAC_02153 [Anaerostipes caccae DSM 14662] gi|317471162|ref|ZP_07930533.1| 4Fe-4S binding domain-containing protein [Anaerostipes sp. 3_2_56FAA] gi|167652795|gb|EDR96924.1| hypothetical protein ANACAC_02153 [Anaerostipes caccae DSM 14662] gi|316901377|gb|EFV23320.1| 4Fe-4S binding domain-containing protein [Anaerostipes sp. 3_2_56FAA] Length = 56 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 11/56 (19%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI+C CE CPA AI+ G Y ID C+ CG C + CP AI Sbjct: 9 CISCGACEGTCPAGAISEGDGQ-----------YVIDADTCLDCGACADGCPTGAI 53 >gi|159162230|pdb|1E08|A Chain A, Structural Model Of The [fe]-HydrogenaseCYTOCHROME C553 Complex Combining Nmr And Soft-Docking gi|159162369|pdb|1GX7|A Chain A, Best Model Of The Electron Transfer Complex Between Cytochrome C3 And [fe]-Hydrogenase Length = 371 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 24/64 (37%), Gaps = 9/64 (14%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E +CI C C CP AI E G + CI CG C CP + Sbjct: 3 QIDEAKCIGCDTCSQYCPTAAIFGEMGEPHSIPH---------IEACINCGQCLTHCPEN 53 Query: 117 AIVE 120 AI E Sbjct: 54 AIYE 57 >gi|124039603|dbj|BAF45397.1| vinyl chloride reductive dehalogenase [uncultured bacterium] Length = 519 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 5/68 (7%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR----YDIDMIKC-IYCGLCQEACP 114 E C C +C +C + + E P G V+ Y D C CG+CQ +CP Sbjct: 397 FEFCKTCYICRDVCVSGGVHQEDEPTWDSGNWWNVQGYLGYRTDWSGCHNQCGMCQSSCP 456 Query: 115 VDAIVEGP 122 I Sbjct: 457 FTYIGLKN 464 >gi|78224616|ref|YP_386363.1| heterodisulfide reductase subunit [Geobacter metallireducens GS-15] gi|78195871|gb|ABB33638.1| Heterodisulfide reductase subunit [Geobacter metallireducens GS-15] Length = 665 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 1/56 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 E+ C+AC C+ +CP A+ E R G V ++ C CG CQ +CP Sbjct: 590 NEKNCVACLYCKKVCPYGAVE-EKEIRDRQGNLIRVVAYVNPGVCGGCGTCQASCP 644 >gi|78224609|ref|YP_386356.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Geobacter metallireducens GS-15] gi|78195864|gb|ABB33631.1| Pyruvate:ferredoxin (flavodoxin) oxidoreductase [Geobacter metallireducens GS-15] Length = 1195 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 22/73 (30%), Gaps = 16/73 (21%) Query: 58 NGEERCIACKLCEAICPAQ----------------AITIESGPRCHDGTRRTVRYDIDMI 101 E+ CI C +C +CP A + + + + + Sbjct: 691 WDEQLCIQCGICSFVCPHATIRMKAYDASVLSGAPATFKSVDCKVPEFKGQKLTVQVAPE 750 Query: 102 KCIYCGLCQEACP 114 C CG C CP Sbjct: 751 DCTGCGACVHNCP 763 Score = 35.1 bits (79), Expect = 3.3, Method: Composition-based stats. Identities = 8/18 (44%), Positives = 9/18 (50%) Query: 103 CIYCGLCQEACPVDAIVE 120 CI CG+C CP I Sbjct: 696 CIQCGICSFVCPHATIRM 713 >gi|89074937|ref|ZP_01161387.1| Hypothetical pyruvate formate lyase activating enzyme [Photobacterium sp. SKA34] gi|89049334|gb|EAR54897.1| Hypothetical pyruvate formate lyase activating enzyme [Photobacterium sp. SKA34] Length = 269 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 27/94 (28%), Gaps = 15/94 (15%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 P C C C CP QA+ C C C E CP Sbjct: 16 HNPQIIGICNHCADCVKHCPTQALQTIHTENEKTKVVWNK------ALCTECDKCIEVCP 69 Query: 115 VDAIVEG---PNFEFATETRQELYYDKERLLNNG 145 A + +E + R+ RLL NG Sbjct: 70 HQASPKTMTMTVYELIEKIREN------RLLING 97 >gi|146279225|ref|YP_001169383.1| electron transport complex, RnfABCDGE type, D subunit [Rhodobacter sphaeroides ATCC 17025] gi|145557466|gb|ABP72078.1| electron transport complex, RnfABCDGE type, D subunit [Rhodobacter sphaeroides ATCC 17025] Length = 519 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 29/141 (20%), Positives = 42/141 (29%), Gaps = 21/141 (14%) Query: 20 FFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE---RCIACKLCEAICPAQ 76 L + + P KG++ G AL CI C C CP Sbjct: 340 LLLGGPMMGQPIQNLRVPVVKGTS-----GILALTTSETPGCETMPCIRCGRCSQACPVG 394 Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 E R I ++ CI CG C CP + I +A Sbjct: 395 LTPFELNARI-QADDLEGAGRIGLLDCITCGCCAFTCPAN-IPLVQTIHYA--------- 443 Query: 137 DKERLLNN-GDRWESEIVRNI 156 K +L G + + E + + Sbjct: 444 -KGKLAEAEGRKHQQEETKRL 463 >gi|323705704|ref|ZP_08117277.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacterium xylanolyticum LX-11] gi|323534922|gb|EGB24700.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Thermoanaerobacterium xylanolyticum LX-11] Length = 1175 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 24/74 (32%), Gaps = 16/74 (21%) Query: 57 PNGEERCIACKLCEAICPAQAITI-----ESGPRCHDGTRRTV-----------RYDIDM 100 + CI C C +CP AI E +G R + + Sbjct: 683 EWQMDNCIQCNQCAYVCPHAAIRPFLLNEEEVKNAPEGFTSKKAVGKGLEGLNFRIQVSV 742 Query: 101 IKCIYCGLCQEACP 114 + C CG+C CP Sbjct: 743 LDCTGCGVCANTCP 756 Score = 35.1 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 9/20 (45%), Positives = 9/20 (45%) Query: 99 DMIKCIYCGLCQEACPVDAI 118 M CI C C CP AI Sbjct: 685 QMDNCIQCNQCAYVCPHAAI 704 >gi|309774562|ref|ZP_07669588.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Erysipelotrichaceae bacterium 3_1_53] gi|308917677|gb|EFP63391.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Erysipelotrichaceae bacterium 3_1_53] Length = 1168 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 27/83 (32%), Gaps = 16/83 (19%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQ-------------AITIESGPRCHDGTRR---TV 94 A++ E CI C +C +CP A +E G Sbjct: 678 IAVQVPTWHPENCIQCGICSFVCPHATIRPFLLTEEEVAAAPMEFETITPMGKGVENLKY 737 Query: 95 RYDIDMIKCIYCGLCQEACPVDA 117 R + C+ CGLC CP A Sbjct: 738 RIQVTPANCVGCGLCAVECPGKA 760 Score = 34.7 bits (78), Expect = 4.9, Method: Composition-based stats. Identities = 8/20 (40%), Positives = 9/20 (45%) Query: 99 DMIKCIYCGLCQEACPVDAI 118 CI CG+C CP I Sbjct: 686 HPENCIQCGICSFVCPHATI 705 >gi|307823817|ref|ZP_07654045.1| electron transport complex, RnfABCDGE type, B subunit [Methylobacter tundripaludum SV96] gi|307735111|gb|EFO05960.1| electron transport complex, RnfABCDGE type, B subunit [Methylobacter tundripaludum SV96] Length = 190 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 23/75 (30%), Gaps = 10/75 (13%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 E L E C C C +CP AI + + CI C Sbjct: 98 KEPELLVARVSEATCTGCTRCFKVCPTDAIVGAPKQ----------IHAVVADACIACKK 147 Query: 109 CQEACPVDAIVEGPN 123 C E CP + + P Sbjct: 148 CVEVCPTECLQMHPI 162 >gi|302872534|ref|YP_003841170.1| hypothetical protein COB47_1916 [Caldicellulosiruptor obsidiansis OB47] gi|302575393|gb|ADL43184.1| protein of unknown function DUF362 [Caldicellulosiruptor obsidiansis OB47] Length = 375 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 11/66 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C C CPAQAI + S +D+ KCI C C E CP AI Sbjct: 314 DRNICIGCAECFNACPAQAIEMRSRKAY-----------VDLKKCIKCYCCHELCPAKAI 362 Query: 119 VEGPNF 124 +F Sbjct: 363 KIKRSF 368 >gi|302339470|ref|YP_003804676.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Spirochaeta smaragdinae DSM 11293] gi|301636655|gb|ADK82082.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Spirochaeta smaragdinae DSM 11293] Length = 495 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 9/59 (15%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 IAC C CPA AIT+E+ +D +C C C CP A+ Sbjct: 375 IACNPCADACPAGAITVETITSLP---------VVDYSRCTGCMRCLSVCPGQAVFMVD 424 >gi|291559406|emb|CBL38206.1| electron transport complex, RnfABCDGE type, C subunit [butyrate-producing bacterium SSC/2] Length = 438 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 28/89 (31%), Gaps = 3/89 (3%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 A T + P K F N CI C C ++CP + + Sbjct: 330 MMGMAMFTTDVPAVKT--FSCFLAFTKDEVAANQPSNCIRCGRCVSVCPQK-LMPAKLSV 386 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 D + + +C+ CG C CP Sbjct: 387 LADHNQFDEFEKLYGAECVECGSCSFVCP 415 >gi|317152862|ref|YP_004120910.1| putative ferredoxin [Desulfovibrio aespoeensis Aspo-2] gi|316943113|gb|ADU62164.1| putative ferredoxin [Desulfovibrio aespoeensis Aspo-2] Length = 266 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 14/79 (17%) Query: 46 RFRGEHALR--RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103 +RG AL + + E+C C +C CP AI + ID KC Sbjct: 176 PYRGSSALWSVDFISVSEKCAQCGVCAETCPMGAIDLNDSAV------------IDKEKC 223 Query: 104 IYCGLCQEACPVDAIVEGP 122 I C C + CP +A P Sbjct: 224 ITCCACIKICPQEARSMKP 242 >gi|289578036|ref|YP_003476663.1| Fe-S cluster domain protein [Thermoanaerobacter italicus Ab9] gi|289527749|gb|ADD02101.1| Fe-S cluster domain protein [Thermoanaerobacter italicus Ab9] Length = 435 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 23/68 (33%), Gaps = 11/68 (16%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 ++RC C C CP +AI + G I +CI CG C Sbjct: 1 MLYFHSVTLDKDRCRGCTNCIKRCPTEAIRVRDGKA-----------RIINERCIDCGEC 49 Query: 110 QEACPVDA 117 CP A Sbjct: 50 IRVCPYHA 57 >gi|218130166|ref|ZP_03458970.1| hypothetical protein BACEGG_01754 [Bacteroides eggerthii DSM 20697] gi|217987670|gb|EEC53998.1| hypothetical protein BACEGG_01754 [Bacteroides eggerthii DSM 20697] Length = 502 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 8/80 (10%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIA------CKLCEAICPAQAITIESGPRCHDGTRRTV 94 + + + +E CI C C CP AI + + + +R+ Sbjct: 407 RPITKADKSAIQIGHAVWIKENCICITDDVECGNCARHCPVGAIQMVASDPENPESRKIP 466 Query: 95 RYDIDMIKCIYCGLCQEACP 114 ++ +CI CG C+ CP Sbjct: 467 V--VNTERCIGCGACENLCP 484 Score = 40.9 bits (94), Expect = 0.061, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 27/84 (32%), Gaps = 5/84 (5%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100 +S R Y G R C C +CPA AI + + + Sbjct: 370 RPSSDLTRLMQPEMSYERGYCR-PECTKCAEVCPAGAIRPITKADKSAIQIGHAVWIKEN 428 Query: 101 IKCI----YCGLCQEACPVDAIVE 120 CI CG C CPV AI Sbjct: 429 CICITDDVECGNCARHCPVGAIQM 452 Score = 37.0 bits (84), Expect = 0.95, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 29/78 (37%), Gaps = 13/78 (16%) Query: 47 FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 F +++L + +C C LC C A I ++ ++ID +C+ C Sbjct: 210 FLSKYSLFKPVIDTTKCNGCGLCARNCKASCINSKA-------------HEIDYSRCVAC 256 Query: 107 GLCQEACPVDAIVEGPNF 124 C + C AI Sbjct: 257 MDCLDKCKQGAITYTRRH 274 Score = 36.2 bits (82), Expect = 1.3, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 34/112 (30%), Gaps = 3/112 (2%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 +K N + C AC+LC ++CP Q + S + Sbjct: 329 EKKIPERATAITPPGSMSARNFAQHCTACQLCVSVCPNQVLRPSSDLTRLMQPEMSYERG 388 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWE 149 +C C E CP AI + + + KE + D E Sbjct: 389 YCRPECTK---CAEVCPAGAIRPITKADKSAIQIGHAVWIKENCICITDDVE 437 >gi|150399562|ref|YP_001323329.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanococcus vannielii SB] gi|150012265|gb|ABR54717.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus vannielii SB] Length = 140 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 16/74 (21%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGT----------------RRTVRYDIDMIKCIYC 106 C++C CE ICP AI + G + + ++ KCI C Sbjct: 10 CVSCGKCERICPLNAIHVFDGIPLRCMHCEDAPCIFACPKDAITKIDDKVVLNPEKCIGC 69 Query: 107 GLCQEACPVDAIVE 120 LC EACPV AI Sbjct: 70 ALCIEACPVGAIDM 83 >gi|78358565|ref|YP_390014.1| heterodisulfide reductase subunit A [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78220970|gb|ABB40319.1| heterodisulfide reductase, A subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 652 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 22/61 (36%), Gaps = 7/61 (11%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 RC+ C C CP AI + R + + C CG+C CP AI Sbjct: 583 RCVGCGKCRETCPFGAIEMTE-------FRGMPKASVVETVCQGCGICAVTCPQGAIQLQ 635 Query: 122 P 122 Sbjct: 636 H 636 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 22/77 (28%), Gaps = 13/77 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGP--------RCHDGTRRTVRYDIDMIKCI---- 104 C C CE CPA+ + + + I CI Sbjct: 236 YVDWSLCTGCGACEEKCPARKTYDKFNEGIGRTTAIKIAFPQAIPKKAVITPETCIMLTK 295 Query: 105 -YCGLCQEACPVDAIVE 120 CG C + CP AI Sbjct: 296 GKCGNCAKVCPAGAIQF 312 >gi|134299442|ref|YP_001112938.1| putative PAS/PAC sensor protein [Desulfotomaculum reducens MI-1] gi|134052142|gb|ABO50113.1| putative PAS/PAC sensor protein [Desulfotomaculum reducens MI-1] Length = 573 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 6/56 (10%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 +C C C IC +AI R + G + + C++CG C ACP A Sbjct: 9 KCRDCYRCVRICNLKAI------RMNTGHQGRFHAQVIDELCVHCGQCILACPQRA 58 >gi|323702073|ref|ZP_08113741.1| hydrogenase, Fe-only [Desulfotomaculum nigrificans DSM 574] gi|323532955|gb|EGB22826.1| hydrogenase, Fe-only [Desulfotomaculum nigrificans DSM 574] Length = 657 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 20/63 (31%), Gaps = 3/63 (4%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM---IKCIYCGLCQEACPV 115 +CI C LC +C + + V CI CG C CP Sbjct: 142 DPNKCILCGLCVRVCKEKQGVGVWDFKNRGSRTEIVAAMDQPLAESACINCGQCIAVCPT 201 Query: 116 DAI 118 A+ Sbjct: 202 GAL 204 >gi|312887265|ref|ZP_07746868.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Mucilaginibacter paludis DSM 18603] gi|311300223|gb|EFQ77289.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Mucilaginibacter paludis DSM 18603] Length = 542 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 5/61 (8%) Query: 61 ERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 +RC++C C A ++ + G R YD +C C +C E CP AI Sbjct: 482 QRCLSCGNCFECDGCFGACPQQAVIKLGKGKRYAFNYD----ECTGCAICYEQCPCHAIA 537 Query: 120 E 120 Sbjct: 538 L 538 >gi|289523694|ref|ZP_06440548.1| iron-sulfur cluster-binding/ATPase domain protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289503386|gb|EFD24550.1| iron-sulfur cluster-binding/ATPase domain protein [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 297 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 19/62 (30%), Gaps = 11/62 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +RC C C +C AI + C CG C CP AI Sbjct: 71 DADRCNHCGRCAEVCAYHAIASLPSKVI-----------VFPELCHGCGACSYLCPESAI 119 Query: 119 VE 120 E Sbjct: 120 AE 121 Score = 34.7 bits (78), Expect = 4.8, Method: Composition-based stats. Identities = 11/43 (25%), Positives = 14/43 (32%) Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 A + ID +C +CG C E C AI Sbjct: 48 NANLFVNASIERAEPVHVPTPRIDADRCNHCGRCAEVCAYHAI 90 >gi|282164250|ref|YP_003356635.1| tungsten-containing formylmethanofuran dehydrogenase subunit G [Methanocella paludicola SANAE] gi|282156564|dbj|BAI61652.1| tungsten-containing formylmethanofuran dehydrogenase subunit G [Methanocella paludicola SANAE] Length = 80 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 19/67 (28%), Gaps = 4/67 (5%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRT----VRYDIDMIKCIYCGLCQEACPVD 116 C C C CP A+ + ID C CG+C CP Sbjct: 11 RICTGCNNCVVACPVNALELTVINPVTKKKTYNVLNGKAVVIDEDVCNGCGICLMVCPQR 70 Query: 117 AIVEGPN 123 AI Sbjct: 71 AITLTTE 77 >gi|182701711|ref|ZP_02614545.2| iron-sulfur cluster-binding protein [Clostridium botulinum NCTC 2916] gi|182669412|gb|EDT81388.1| iron-sulfur cluster-binding protein [Clostridium botulinum NCTC 2916] Length = 273 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 53/153 (34%), Gaps = 31/153 (20%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRY--PN 58 M I R ++ K ++ F T P+ K +G+ R P Sbjct: 145 MDIVRTFADEIYTKIINEKI---IKTVFVKGNT---PYRKYYMPKDEKGQPIDIRKVKPK 198 Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI CKLC +CP +I E + + CI C C + CPV A Sbjct: 199 TNNNCINCKLCANLCPMGSIDFEDVTKLN-------------GICIKCCACIKKCPVGA- 244 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 F+ + L + KE L N R+ E Sbjct: 245 ---KYFDDSGY----LKHKKE--LENNFRYRKE 268 >gi|313238360|emb|CBY13441.1| unnamed protein product [Oikopleura dioica] gi|313243431|emb|CBY42191.1| unnamed protein product [Oikopleura dioica] Length = 613 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 21/56 (37%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 K C C + G C + T I CI CG+C + CP +AI Sbjct: 17 KKCRQECKKTCPVVRMGKLCIEVTATDKSAKIYETLCIGCGICVKKCPFEAIQIIN 72 >gi|312074026|ref|XP_003139785.1| ATP-binding cassette subfamily E [Loa loa] gi|307765049|gb|EFO24283.1| ATP-binding cassette subfamily E [Loa loa] Length = 619 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 22/56 (39%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 K C C + G +C + +I CI CG+C + CP +AI Sbjct: 28 KNCGLACKKSCPVVRMGKQCIVVESNSKMAEISETLCIGCGICVKKCPYEAIKIIN 83 >gi|260429222|ref|ZP_05783199.1| dihydroorotate dehydrogenase family protein [Citreicella sp. SE45] gi|260419845|gb|EEX13098.1| dihydroorotate dehydrogenase family protein [Citreicella sp. SE45] Length = 434 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 14/76 (18%), Positives = 25/76 (32%), Gaps = 8/76 (10%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 + + + + ++ CI+C C A C E + + +C+ Sbjct: 329 QHLNLNYISKARIDQDACISCGRCYAAC-------EDTSHQAIDMSEDRVFTVKDDECVA 381 Query: 106 CGLCQEACP-VDAIVE 120 C LC CP I Sbjct: 382 CNLCVNVCPIEGCITM 397 >gi|298530556|ref|ZP_07017958.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfonatronospira thiodismutans ASO3-1] gi|298509930|gb|EFI33834.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfonatronospira thiodismutans ASO3-1] Length = 247 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 23/85 (27%), Positives = 29/85 (34%), Gaps = 13/85 (15%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYD 97 K + G++ Y G C+ C C CP+ A E T Sbjct: 40 KEKSPDFSMGKNTYAHYQPG--GCMHCDNPTCVHACPSGATYKEEE---------TGIVQ 88 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 I+ CI CG C ACP A P Sbjct: 89 INKDMCIGCGNCVVACPYSARYRHP 113 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 18/68 (26%), Gaps = 9/68 (13%) Query: 59 GEERCIACKLCEAICPAQA-------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGL--C 109 CI CK C A C + + C++C C Sbjct: 10 DSSVCIDCKACMASCKVEHGLPRGYWRNWIKEKSPDFSMGKNTYAHYQPGGCMHCDNPTC 69 Query: 110 QEACPVDA 117 ACP A Sbjct: 70 VHACPSGA 77 Score = 34.3 bits (77), Expect = 5.5, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 21/76 (27%), Gaps = 22/76 (28%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG--------- 107 ++ CI C C CP A R KC YC Sbjct: 88 QINKDMCIGCGNCVVACPYSARYRHPTLRV-------------PDKCDYCQDRLAMGLQP 134 Query: 108 LCQEACPVDAIVEGPN 123 C + CP A V G Sbjct: 135 ACVDTCPTKARVFGDI 150 >gi|222087420|ref|YP_002545957.1| formate dehydrogenase, alpha subunit [Agrobacterium radiobacter K84] gi|221724868|gb|ACM28024.1| formate dehydrogenase, alpha subunit [Agrobacterium radiobacter K84] Length = 959 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 28/79 (35%), Gaps = 3/79 (3%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRT--VRYDIDMI 101 + + + +CI C C C Q + G+R + + Sbjct: 160 KWMPKDESNPYFTYDPSKCIVCSRCVRACEEVQGTFALTIEGRGFGSRVSPGMHEHFIDS 219 Query: 102 KCIYCGLCQEACPVDAIVE 120 +C+ CG C +ACP + E Sbjct: 220 ECVSCGACVQACPTATLTE 238 >gi|206891155|ref|YP_002249518.1| hydrogenase-1 [Thermodesulfovibrio yellowstonii DSM 11347] gi|206743093|gb|ACI22150.1| hydrogenase-1 [Thermodesulfovibrio yellowstonii DSM 11347] Length = 589 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 3/68 (4%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---YDIDMIKCIYCGLCQEACPV 115 +CI C+ C C + I +C+ CG C CP Sbjct: 150 NPNKCIICQRCITACKVLQSVDILELYGNGYDAVVRPLGGKPIIETQCVACGQCALVCPT 209 Query: 116 DAIVEGPN 123 AIVE + Sbjct: 210 AAIVERDD 217 >gi|195442589|ref|XP_002069035.1| GK12286 [Drosophila willistoni] gi|194165120|gb|EDW80021.1| GK12286 [Drosophila willistoni] Length = 611 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 21/75 (28%), Positives = 29/75 (38%), Gaps = 7/75 (9%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP---N 123 K C C + G C + T + + CI CG+C + CP +AI N Sbjct: 27 KRCRQECKKSCPVVRMGKLCIEVTPTSKIASLSEELCIGCGICVKKCPFEAITIINLPSN 86 Query: 124 FEFATETRQELYYDK 138 E T R Y+K Sbjct: 87 LEKHTTHR----YNK 97 >gi|158521017|ref|YP_001528887.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfococcus oleovorans Hxd3] gi|158509843|gb|ABW66810.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfococcus oleovorans Hxd3] Length = 778 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 22/66 (33%), Gaps = 10/66 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + +RC CK C CP A+ + + +C CG C A Sbjct: 559 MTFPDFFFQRCTQCKRCTEECPFGALDDDEKGTPKP----------NPTRCRRCGTCMGA 608 Query: 113 CPVDAI 118 CP I Sbjct: 609 CPERII 614 >gi|197118659|ref|YP_002139086.1| ferredoxin-like protein [Geobacter bemidjiensis Bem] gi|253700567|ref|YP_003021756.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp. M21] gi|197088019|gb|ACH39290.1| ferredoxin-related protein [Geobacter bemidjiensis Bem] gi|251775417|gb|ACT17998.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp. M21] Length = 55 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 11/64 (17%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + CI C C+ CP AI+ R I CI CG C + CP Sbjct: 1 MAHTISDECINCGACDDSCPVNAISEAGDKR-----------TIAADTCIDCGACVDTCP 49 Query: 115 VDAI 118 V AI Sbjct: 50 VSAI 53 >gi|94263620|ref|ZP_01287430.1| 4Fe-4S ferredoxin, iron-sulfur binding:Zn-finger, C2H2 type [delta proteobacterium MLMS-1] gi|93456040|gb|EAT06191.1| 4Fe-4S ferredoxin, iron-sulfur binding:Zn-finger, C2H2 type [delta proteobacterium MLMS-1] Length = 684 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 9/60 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ C CK+C+ ICP +AI + + I+ + C CG C ACP+ AI Sbjct: 615 DQQCCTGCKICQNICPYRAIGFDEEKQVAV---------INRVLCRGCGTCAAACPLTAI 665 Score = 34.7 bits (78), Expect = 4.1, Method: Composition-based stats. Identities = 10/17 (58%), Positives = 13/17 (76%) Query: 98 IDMIKCIYCGLCQEACP 114 +D+ +CI CG C EACP Sbjct: 240 VDLGRCIGCGECIEACP 256 Score = 33.9 bits (76), Expect = 6.6, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 28/87 (32%), Gaps = 10/87 (11%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV--- 94 E F + R RCI C C CPA+++ E G Sbjct: 220 EEVSGFLGNFLIKVRQRPRFVDLGRCIGCGECIEACPAESVGTEGGRCKAIDFAVPGALP 279 Query: 95 -RYDIDMIKCIY------CGLCQEACP 114 ID C+ C LCQ ACP Sbjct: 280 NVPKIDPGLCLRGGSDPECRLCQTACP 306 >gi|118580576|ref|YP_901826.1| ferredoxin-dependent glutamate synthase [Pelobacter propionicus DSM 2379] gi|118503286|gb|ABK99768.1| ferredoxin-dependent glutamate synthase [Pelobacter propionicus DSM 2379] Length = 547 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 22/75 (29%), Gaps = 14/75 (18%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCH--------------DGTRRTVRYDIDMIKC 103 RC C C A C AI R + ++ C Sbjct: 20 YDTTRCTLCGSCVAACTFGAIKPRIERRRKAFSDTETPEPKISFKAVPVITQLNVLKHYC 79 Query: 104 IYCGLCQEACPVDAI 118 CG+C+ CP AI Sbjct: 80 RGCGVCERVCPNSAI 94 >gi|114567346|ref|YP_754500.1| NADH dehydrogenase I subunit G [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338281|gb|ABI69129.1| NADH dehydrogenase I chain G [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 363 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 20/65 (30%), Gaps = 3/65 (4%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---YDIDMIKCIYCGLCQEACPV 115 +CI C C C R+ D C++CG C CP Sbjct: 155 DLNKCILCGACVRACEELTGADNLSYLKRGFHRKATTAGDVDYIDSDCVFCGQCVAVCPT 214 Query: 116 DAIVE 120 A+ E Sbjct: 215 GALTE 219 >gi|312880734|ref|ZP_07740534.1| electron transport complex, RnfABCDGE type, B subunit [Aminomonas paucivorans DSM 12260] gi|310784025|gb|EFQ24423.1| electron transport complex, RnfABCDGE type, B subunit [Aminomonas paucivorans DSM 12260] Length = 271 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 11/60 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI C LC CP A+ +E+ ID KC C LC + CP AI Sbjct: 214 CQVGCIGCGLCVKACPNDAVHVENNLA-----------RIDPDKCTQCCLCVDKCPTKAI 262 Score = 40.5 bits (93), Expect = 0.074, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 5/70 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK-----CIYCGLCQEAC 113 E +C+ C C +CP I + + + D+ K CI CGLC +AC Sbjct: 169 DEAKCVGCGACVTLCPKGLIELVPLDQRVRVACHSTHRGPDVKKACQVGCIGCGLCVKAC 228 Query: 114 PVDAIVEGPN 123 P DA+ N Sbjct: 229 PNDAVHVENN 238 >gi|290769854|gb|ADD61626.1| putative protein [uncultured organism] Length = 295 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 15/77 (19%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 +L + ++C++C C C + + +CI CG Sbjct: 224 MNRVSLFQMRVDTDKCVSCGACARACKMD---------------VDITKTPNHAECIRCG 268 Query: 108 LCQEACPVDAIVEGPNF 124 +C ++CP AI F Sbjct: 269 MCIKSCPTKAIHYQYGF 285 >gi|294505910|ref|YP_003569968.1| pyridine nucleotide-disulphide oxidoreductase domain protein [Salinibacter ruber M8] gi|294342238|emb|CBH23016.1| Pyridine nucleotide-disulphide oxidoreductase domain protein [Salinibacter ruber M8] Length = 839 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 9/63 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +++CI+C C ++C + + +D +C+ C C E CP + Sbjct: 755 DKKKCISCNQCTSVCHQGIDVMAYAQKGEP---------MDDPECVRCSACVETCPTGVL 805 Query: 119 VEG 121 G Sbjct: 806 EFG 808 >gi|270296779|ref|ZP_06202978.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270272766|gb|EFA18629.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 498 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 8/80 (10%) Query: 41 GSTSPRFRGEHALRRYPNGEERCI------ACKLCEAICPAQAITIESGPRCHDGTRRTV 94 + + + ++ CI C C CP AI + + + Sbjct: 403 RPITKADKSSVQIGHAVWVKKNCIPLTDGVQCGNCARHCPTGAIQMVPSIPEDKDSPKIP 462 Query: 95 RYDIDMIKCIYCGLCQEACP 114 I++ +CI CG C+ CP Sbjct: 463 V--INVERCIGCGACENLCP 480 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 25/91 (27%), Gaps = 4/91 (4%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + S R C C +CPA AI + Sbjct: 360 CPNQVLRPSADLRKLMQPEMSYERGYCRPECTKCSEVCPAGAIRPITKADKSSVQIGHAV 419 Query: 96 Y----DIDMIKCIYCGLCQEACPVDAIVEGP 122 + I + + CG C CP AI P Sbjct: 420 WVKKNCIPLTDGVQCGNCARHCPTGAIQMVP 450 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 13/72 (18%) Query: 47 FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 F ++L R E+C C LC C A I + + ID +C+ C Sbjct: 211 FLSRYSLFRITIDSEKCNQCSLCSRNCKAACINFKE-------------HQIDASRCVVC 257 Query: 107 GLCQEACPVDAI 118 C E C AI Sbjct: 258 MNCIEKCKHGAI 269 Score = 33.9 bits (76), Expect = 7.4, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 3/58 (5%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C AC+LC + CP Q + + R + +C C E CP AI Sbjct: 348 QHCTACQLCVSACPNQVLRPSADLRKLMQPEMSYERGYCRPECTK---CSEVCPAGAI 402 >gi|261402607|ref|YP_003246831.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus vulcanius M7] gi|261369600|gb|ACX72349.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus vulcanius M7] Length = 161 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 24/81 (29%), Positives = 36/81 (44%), Gaps = 10/81 (12%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 + P+F R E++CI C C +CP AIT + + Sbjct: 13 EDNIKLLPKFNIVLNRREIIVKEDKCIGCGKCREVCPTNAITYNNK----------LHIV 62 Query: 98 IDMIKCIYCGLCQEACPVDAI 118 I+ KC++CG C+E CP +AI Sbjct: 63 INREKCVFCGKCKEVCPTNAI 83 Score = 35.5 bits (80), Expect = 2.5, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 24/72 (33%), Gaps = 6/72 (8%) Query: 55 RYPNGEERCIACKLCEAICPAQA------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 E+C+ C C+ +CP A + + +C C + Sbjct: 60 HIVINREKCVFCGKCKEVCPTNAIVIIRLRCEIKEDAKIIEVDKYEFIEYLSERCASCLV 119 Query: 109 CQEACPVDAIVE 120 C + CP AI E Sbjct: 120 CLKNCPFHAIEE 131 >gi|223993977|ref|XP_002286672.1| hypothetical protein THAPSDRAFT_31316 [Thalassiosira pseudonana CCMP1335] gi|220977987|gb|EED96313.1| hypothetical protein THAPSDRAFT_31316 [Thalassiosira pseudonana CCMP1335] Length = 1192 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 44/148 (29%), Gaps = 42/148 (28%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTRR 92 +EK +P AL N C C C A+CP I T + + + Sbjct: 695 YEKRRPNPS-----ALIPKWN-ASACTQCNQCVAVCPHAVIRPFIITRDEAEQAPHPDQF 748 Query: 93 TVRY-------------DIDMIKCIYCGLCQEACPV--DAIVEGP-------------NF 124 I + C C C EACP A+ NF Sbjct: 749 QTVKALGTELAGKRYTLQISPLDCTGCNACVEACPEAPKALEMQDVEDVLSKGGEDNWNF 808 Query: 125 EFATETRQELYYDKERLLNNGDRWESEI 152 R +L ++ G ++++ + Sbjct: 809 AMTLPERGDLV---DKYTVKGSQFQTPL 833 >gi|218261737|ref|ZP_03476472.1| hypothetical protein PRABACTJOHN_02143 [Parabacteroides johnsonii DSM 18315] gi|218223813|gb|EEC96463.1| hypothetical protein PRABACTJOHN_02143 [Parabacteroides johnsonii DSM 18315] Length = 301 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 36/89 (40%), Gaps = 15/89 (16%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++CI C+ C CP QA+T+ DG +C CG+C E CP A+ Sbjct: 50 KKCIGCRTCVEACPQQALTLTPEGIVTDG-----------ARCTLCGICAEVCPALAMEI 98 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWE 149 + + L + E+ DR E Sbjct: 99 SG----TEYSAEALMKEIEKETVFMDRSE 123 >gi|195446906|ref|XP_002070975.1| GK25544 [Drosophila willistoni] gi|194167060|gb|EDW81961.1| GK25544 [Drosophila willistoni] Length = 1033 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 18/65 (27%), Gaps = 8/65 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP-VDA 117 ++ CI C C C + C C LC CP +D Sbjct: 949 NDDMCINCGKCYMTCA-------DSGYQAIEFDKDTHLPHVNDDCTGCTLCVSVCPIIDC 1001 Query: 118 IVEGP 122 I P Sbjct: 1002 ITMEP 1006 >gi|170756324|ref|YP_001781395.1| [Fe] hydrogenase [Clostridium botulinum B1 str. Okra] gi|169121536|gb|ACA45372.1| iron hydrogenase 1 [Clostridium botulinum B1 str. Okra] Length = 577 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 3/68 (4%) Query: 59 GEERCIACKLCEAICPAQAITIE---SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 ++CI C+ C +C G I C +CG C CP Sbjct: 149 DMDKCILCRRCITMCNEVQTVGTLSAIGRGFETVVAPAFSEAIKNTNCTFCGQCVSVCPT 208 Query: 116 DAIVEGPN 123 A+ E N Sbjct: 209 GALTEVNN 216 >gi|168180425|ref|ZP_02615089.1| [Fe] hydrogenase [Clostridium botulinum NCTC 2916] gi|182668697|gb|EDT80675.1| [Fe] hydrogenase [Clostridium botulinum NCTC 2916] Length = 577 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 3/68 (4%) Query: 59 GEERCIACKLCEAICPAQAITIE---SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 ++CI C+ C +C G I C +CG C CP Sbjct: 149 DMDKCILCRRCITMCNEVQTVGTLSAIGRGFETVVAPAFSEAIKNTNCTFCGQCVSVCPT 208 Query: 116 DAIVEGPN 123 A+ E N Sbjct: 209 GALTEVNN 216 >gi|159897825|ref|YP_001544072.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Herpetosiphon aurantiacus ATCC 23779] gi|159890864|gb|ABX03944.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Herpetosiphon aurantiacus ATCC 23779] Length = 84 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 29/97 (29%), Positives = 40/97 (41%), Gaps = 15/97 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + +RCIAC CE +CP A+ IE + C +C C+ A Sbjct: 1 MVLPVINLQRCIACGACEHVCPTAAVAIEQQHAVL----------VKPEACTFCDRCEIA 50 Query: 113 CPVDAIVEGPNFEFATETRQELYYDKERL--LNNGDR 147 CP +AI FA ++ K +L LN GDR Sbjct: 51 CPTEAISRSFAIRFAPSSQP---LTKAQLGQLNLGDR 84 >gi|94266345|ref|ZP_01290046.1| 4Fe-4S ferredoxin, iron-sulfur binding:Zn-finger, C2H2 type [delta proteobacterium MLMS-1] gi|93453059|gb|EAT03541.1| 4Fe-4S ferredoxin, iron-sulfur binding:Zn-finger, C2H2 type [delta proteobacterium MLMS-1] Length = 785 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 9/60 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ C CK+C ICP +AI + + I+ + C CG C ACP+ AI Sbjct: 716 DQQCCTGCKICRNICPYRAIGFDEEKQVAV---------INRVLCRGCGTCAAACPLTAI 766 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 28/87 (32%), Gaps = 10/87 (11%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV--- 94 E F + R RCI C C CPA++ +E G Sbjct: 321 EEVSGFLGNFLVKVRQRPRFVDLGRCIGCGECIEACPAESAGVEGGKCKAIDFAVPGALP 380 Query: 95 -RYDIDMIKCIY------CGLCQEACP 114 ID C+ C LCQ ACP Sbjct: 381 NVPKIDPDLCLRGGSDPECRLCQTACP 407 >gi|83815223|ref|YP_444241.1| pyridine nucleotide-disulphide oxidoreductase domain-containing protein [Salinibacter ruber DSM 13855] gi|83756617|gb|ABC44730.1| Pyridine nucleotide-disulphide oxidoreductase domain protein [Salinibacter ruber DSM 13855] Length = 846 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 13/63 (20%), Positives = 25/63 (39%), Gaps = 9/63 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +++CI+C C ++C + + +D +C+ C C E CP + Sbjct: 762 DKKKCISCNQCTSVCHQGIDVMAYAQKGEP---------MDDPECVRCSACVETCPTGVL 812 Query: 119 VEG 121 G Sbjct: 813 EFG 815 >gi|78224215|ref|YP_385962.1| Fe(III) reductase subunit alpha [Geobacter metallireducens GS-15] gi|78195470|gb|ABB33237.1| Fe(III) reductase, alpha subunit [Geobacter metallireducens GS-15] Length = 831 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 21/66 (31%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + RCI C+ C + D + C +CG C ACP Sbjct: 140 ESDPNRCILCEKCVKVDHEVVGCDAIAVVNRGEATIIDTIDGKPLNCEFCGNCVGACPTG 199 Query: 117 AIVEGP 122 ++ P Sbjct: 200 TLISKP 205 >gi|21226713|ref|NP_632635.1| Iron-sulfur cluster-binding protein [Methanosarcina mazei Go1] gi|20905001|gb|AAM30307.1| Iron-sulfur cluster-binding protein [Methanosarcina mazei Go1] Length = 376 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 26/100 (26%), Positives = 35/100 (35%), Gaps = 15/100 (15%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T P R ++ + N +C CK C C A AI + Sbjct: 289 VTAMVP---PFLMRTLRKYLTVKPFIN-TSKCALCKACVLNCSAHAIEEMN--------- 335 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 I+ KCI C C+E CP DA+ +F TR Sbjct: 336 --KTLKINPEKCIQCYCCRELCPNDAVEIRKSFLMKVVTR 373 >gi|56478033|ref|YP_159622.1| 2-ketoglutarate: NADP oxidoreductase, gamma subunit [Aromatoleum aromaticum EbN1] gi|56314076|emb|CAI08721.1| 2-ketoglutarate: NADP oxidoreductase gamma subunit [Aromatoleum aromaticum EbN1] Length = 595 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 26/80 (32%), Gaps = 20/80 (25%) Query: 63 CIACKLCEAICPAQAITIESGPRCHD--------------------GTRRTVRYDIDMIK 102 CI C C ICP + IT + + G + D Sbjct: 501 CIECDACVDICPTECITFTADGEEEELRARLKVPAKNLEQSLYLAEGLKTGRVMVKDENV 560 Query: 103 CIYCGLCQEACPVDAIVEGP 122 C++CG+C E CP A Sbjct: 561 CLHCGMCAERCPTGAWDMQK 580 >gi|91975103|ref|YP_567762.1| formate dehydrogenase, alpha subunit [Rhodopseudomonas palustris BisB5] gi|91681559|gb|ABE37861.1| formate dehydrogenase, alpha subunit [Rhodopseudomonas palustris BisB5] Length = 948 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 3/81 (3%) Query: 55 RYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDM--IKCIYCGLCQE 111 + +CI C C C Q + G+ + +C+ CG C + Sbjct: 159 YFTYDASKCIVCSRCVRACEEVQGTFALTIAGRGFGSVVSPGMQESFLGSECVSCGACVQ 218 Query: 112 ACPVDAIVEGPNFEFATETRQ 132 ACP + E E T R Sbjct: 219 ACPTATLNEKSVIEIGTPERS 239 >gi|326392042|ref|ZP_08213536.1| Fe-S cluster domain protein [Thermoanaerobacter ethanolicus JW 200] gi|325991921|gb|EGD50419.1| Fe-S cluster domain protein [Thermoanaerobacter ethanolicus JW 200] Length = 437 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 11/59 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 ++RC C C CP +AI + G I +CI CG C CP A Sbjct: 10 DKDRCRGCTNCIKRCPTEAIRVRDGKA-----------RIINERCIDCGECIRVCPYHA 57 >gi|312143460|ref|YP_003994906.1| electron transport complex, RnfABCDGE type, B subunit [Halanaerobium sp. 'sapolanicus'] gi|311904111|gb|ADQ14552.1| electron transport complex, RnfABCDGE type, B subunit [Halanaerobium sp. 'sapolanicus'] Length = 331 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 11/61 (18%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CIAC LC CP AI ++ ID KC+ CG+C E CP I Sbjct: 217 CIACSLCVKACPVDAIEMKDNLAV-----------IDYEKCVDCGICAEKCPTGTIEFQG 265 Query: 123 N 123 Sbjct: 266 E 266 Score = 42.0 bits (97), Expect = 0.029, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 27/78 (34%), Gaps = 5/78 (6%) Query: 59 GEERCIACKLCEAICPAQA-----ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + C C C CP ++ RC + + CI C LC +AC Sbjct: 168 DPDVCTGCGKCIEECPRNILLLAPYKSKNHIRCSSHNIGKIVRKTCEVGCIACSLCVKAC 227 Query: 114 PVDAIVEGPNFEFATETR 131 PVDAI N + Sbjct: 228 PVDAIEMKDNLAVIDYEK 245 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 25/91 (27%), Positives = 32/91 (35%), Gaps = 11/91 (12%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 EK T ++ + C+ C LC CP A+ E Sbjct: 245 KCVDCGICAEKCPTGTIEFQGERIKN-VEINDNCVGCTLCAKACPVDAVEGEIKK----- 298 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + ID CI CGLC EAC VDA+ Sbjct: 299 -----LHKIDQNLCIQCGLCYEACNVDAVDL 324 Score = 38.2 bits (87), Expect = 0.36, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 20/56 (35%), Gaps = 10/56 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C+ C+ ICP AI + ID C CG C E CP Sbjct: 138 CQYSCMGFGDCKVICPFDAIIMNDNGLPE----------IDPDVCTGCGKCIEECP 183 >gi|301059378|ref|ZP_07200305.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] gi|300446607|gb|EFK10445.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] Length = 169 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 26/71 (36%), Gaps = 10/71 (14%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 Y +C C +C CP +AI+ + I KCI CG C EACP Sbjct: 72 YEIDSHKCQGCMICARRCPVEAISGGKKQA----------HVIAQDKCIKCGTCLEACPH 121 Query: 116 DAIVEGPNFEF 126 + E Sbjct: 122 GSAPWKCILEP 132 >gi|291519330|emb|CBK74551.1| electron transport complex, RnfABCDGE type, C subunit/electron transport complex, RnfABCDGE type, D subunit [Butyrivibrio fibrisolvens 16/4] Length = 760 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 26/83 (31%), Gaps = 7/83 (8%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP-----VDA 117 CI C C CP I G + + CI CG C ACP A Sbjct: 366 CINCGRCVEACPENLIPSRLSKFSDHGDKEQFEKWYGLE-CIECGSCSYACPAKQPLAQA 424 Query: 118 IVEGPNFEFATETRQELYYDKER 140 I A E R+ K+ Sbjct: 425 IKTMKKIVLA-EKRKSRKERKDM 446 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 10/28 (35%), Positives = 13/28 (46%) Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + + CI CG C EACP + I Sbjct: 355 YDDVSEQETTACINCGRCVEACPENLIP 382 >gi|268610343|ref|ZP_06144070.1| hypothetical protein RflaF_12691 [Ruminococcus flavefaciens FD-1] Length = 205 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 29/84 (34%), Gaps = 14/84 (16%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 P E+ S F G + CI C C + CP I ++ Sbjct: 133 KKPIERD--SFTFGGAEIRASGYFVTDDCIRCGSCLSDCPQSCIELKEKAV--------- 181 Query: 95 RYDIDMIKCIYCGLCQEACPVDAI 118 I C++CG C CPV A+ Sbjct: 182 ---IRQENCLHCGNCAAVCPVGAV 202 >gi|265766041|ref|ZP_06094082.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|263253709|gb|EEZ25174.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 278 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 19/64 (29%), Gaps = 12/64 (18%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + E C C C +CP AI +CI C C + C Sbjct: 202 TPWVEDESLCTHCGACAKMCPVSAIAKGDELNTD------------AERCIKCCACVKGC 249 Query: 114 PVDA 117 P A Sbjct: 250 PQKA 253 Score = 38.2 bits (87), Expect = 0.45, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 15/30 (50%) Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + D C +CG C + CPV AI +G Sbjct: 202 TPWVEDESLCTHCGACAKMCPVSAIAKGDE 231 >gi|254475131|ref|ZP_05088517.1| dihydroorotate dehydrogenase family protein [Ruegeria sp. R11] gi|214029374|gb|EEB70209.1| dihydroorotate dehydrogenase family protein [Ruegeria sp. R11] Length = 434 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 8/62 (12%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-AI 118 ++ CI C C A C E + + +C+ C LC CPV+ I Sbjct: 344 QDDCIKCGRCFAAC-------EDTSHQAIAMSEDRVFTVKDDECVACNLCVNVCPVEGCI 396 Query: 119 VE 120 Sbjct: 397 TM 398 >gi|149195082|ref|ZP_01872174.1| pyruvate flavodoxin oxidoreductase subunit delta [Caminibacter mediatlanticus TB-2] gi|149134795|gb|EDM23279.1| pyruvate flavodoxin oxidoreductase subunit delta [Caminibacter mediatlanticus TB-2] Length = 132 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 21/58 (36%), Gaps = 1/58 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E CI C C CP +E G ++ I+ C C +C E CP Sbjct: 52 NRELCIDCDFCWVSCPDSCFLVEEVVN-KRGKKQAKIVGINYNLCKGCAVCVEVCPTP 108 >gi|126179324|ref|YP_001047289.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit [Methanoculleus marisnigri JR1] gi|125862118|gb|ABN57307.1| formate dehydrogenase, beta subunit (F420) [Methanoculleus marisnigri JR1] Length = 412 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 9/74 (12%) Query: 49 GEHALRRYPNGEERCIACKLCEAICP---------AQAITIESGPRCHDGTRRTVRYDID 99 G+ L++ + RCI C C CP +A +E G +RY Sbjct: 280 GKERLKKIMDATSRCIKCYACIENCPICYCVECSTKKAYLVEPGQVPPPFMFHLIRYAHI 339 Query: 100 MIKCIYCGLCQEAC 113 CI CG C+E C Sbjct: 340 SDSCINCGQCEENC 353 >gi|22074759|gb|AAM19067.1| RNase L inhibitor-like protein [Oryza sativa Japonica Group] Length = 604 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 24/56 (42%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 K C C +++G C + T + I CI CG+C + CP DAI Sbjct: 19 KKCRQECKKSCPVVKTGKLCIEVTPASKLAFISEELCIGCGICVKKCPFDAIEIIN 74 >gi|53714499|ref|YP_100491.1| putative ferredoxin [Bacteroides fragilis YCH46] gi|253565000|ref|ZP_04842456.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|52217364|dbj|BAD49957.1| putative ferredoxin [Bacteroides fragilis YCH46] gi|251946465|gb|EES86842.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] Length = 278 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 19/64 (29%), Gaps = 12/64 (18%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + E C C C +CP AI +CI C C + C Sbjct: 202 TPWVEDESLCTHCGACAKMCPVSAIAKGDELNTD------------AERCIKCCACVKGC 249 Query: 114 PVDA 117 P A Sbjct: 250 PQKA 253 Score = 38.2 bits (87), Expect = 0.45, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 15/30 (50%) Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + D C +CG C + CPV AI +G Sbjct: 202 TPWVEDESLCTHCGACAKMCPVSAIAKGDE 231 >gi|41017304|sp|Q49180|MVHB_METFE RecName: Full=Polyferredoxin protein mvhB gi|149806|gb|AAA72833.1| polyferredoxin (mvhB) [Methanothermus fervidus] Length = 412 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 EE+CI C +C CP SG + +R + +D +CI C C E CP I Sbjct: 173 DEEKCIKCGICAQTCPWN-SVYISGKKPQKSSRTIENFTLDKEECIGCNTCVEICPGGFI 231 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 1/65 (1%) Query: 60 EERCIACKLCEAICPAQAIT-IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C C +CP A+ +E + + T + R + C CG C + CP + Sbjct: 321 YTICTTCGACTTVCPTGALKLVEVSKKVNGETVKRNRIQYNPSLCDKCGNCVDVCPYGIL 380 Query: 119 VEGPN 123 + Sbjct: 381 KLTDD 385 Score = 42.4 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C+ C+ C +CP + I IE + + I ++ C+ CGLC CPV+AI Sbjct: 106 FCVLCQQCVNVCPIEVIGIEGVKEPARVEIKIDKP-IYIVDCVGCGLCVPECPVNAITL 163 Score = 42.0 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 10/80 (12%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE- 120 C+ C LC CP AIT+ + +ID KCI CG+C + CP +++ Sbjct: 145 DCVGCGLCVPECPVNAITL---------PKYGESIEIDEEKCIKCGICAQTCPWNSVYIS 195 Query: 121 GPNFEFATETRQELYYDKER 140 G + ++ T + DKE Sbjct: 196 GKKPQKSSRTIENFTLDKEE 215 Score = 42.0 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 22/63 (34%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 +E C C C CP +AI + S + V C CG C CP A Sbjct: 279 YNDENCKFCGRCALNCPNEAIRVVSPKGRVFPGLKKVDEKESYTICTTCGACTTVCPTGA 338 Query: 118 IVE 120 + Sbjct: 339 LKL 341 Score = 37.4 bits (85), Expect = 0.71, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 25/75 (33%), Gaps = 5/75 (6%) Query: 52 ALRRYPNGEERCIACK---LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 A+ P C C C CP A+ E +G + + KC CG Sbjct: 23 AISVKPEDVIYCDMCGGEPKCVEACPNDALRHED--ITLEGGIKKKKITYSPEKCDKCGE 80 Query: 109 CQEACPVDAIVEGPN 123 C + CP + + Sbjct: 81 CVKVCPPGILKLVND 95 Score = 37.0 bits (84), Expect = 0.95, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 1/59 (1%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C AC LCE +CP AI +E + C +CG C CP +AI Sbjct: 242 PEICPACGLCEKLCPTDAIELE-VKLGPAKPVTEEGIVYNDENCKFCGRCALNCPNEAI 299 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 12/26 (46%), Positives = 13/26 (50%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPN 123 I+ CI CG CQ CP AI P Sbjct: 4 INKEDCIRCGACQGVCPTGAISVKPE 29 >gi|302389274|ref|YP_003825095.1| electron transport complex, RnfABCDGE type, B subunit [Thermosediminibacter oceani DSM 16646] gi|302199902|gb|ADL07472.1| electron transport complex, RnfABCDGE type, B subunit [Thermosediminibacter oceani DSM 16646] Length = 345 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 10/61 (16%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + CI C +C CP AI+ E + ++ CI C +C+E CP AI Sbjct: 276 NDNCIGCTICAKNCPVNAISGEVKKKHE----------VNAELCIGCSICEEKCPKGAIT 325 Query: 120 E 120 Sbjct: 326 M 326 Score = 42.4 bits (98), Expect = 0.022, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 22/59 (37%), Gaps = 10/59 (16%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 CI C +CP AIT+ ID KC CGLC + CP I Sbjct: 144 CIGFGDCAKVCPVGAITMSENGLPV----------IDEEKCTGCGLCAKECPKQVIALT 192 Score = 42.0 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 24/56 (42%), Gaps = 11/56 (19%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CIACK CE CP AI + + ID KC C C E CP AI Sbjct: 219 CIACKQCEKACPFDAIHVVNNVAI-----------IDYEKCRNCMKCVEKCPTKAI 263 Score = 40.9 bits (94), Expect = 0.057, Method: Composition-based stats. Identities = 24/70 (34%), Positives = 30/70 (42%), Gaps = 5/70 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV-----RYDIDMIKCIYCGLCQEAC 113 EE+C C LC CP Q I + S R D+ + CI C C++AC Sbjct: 170 DEEKCTGCGLCAKECPKQVIALTSAKNEVHVRCRATLKAKDTRDVCKVGCIACKQCEKAC 229 Query: 114 PVDAIVEGPN 123 P DAI N Sbjct: 230 PFDAIHVVNN 239 Score = 38.9 bits (89), Expect = 0.26, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 9/60 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+C C C CP +AIT R + CI C +C + CPV+AI Sbjct: 244 DYEKCRNCMKCVEKCPTKAITSAFAERKKA---------VINDNCIGCTICAKNCPVNAI 294 >gi|237714546|ref|ZP_04545027.1| ferredoxin [Bacteroides sp. D1] gi|229445315|gb|EEO51106.1| ferredoxin [Bacteroides sp. D1] Length = 300 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 23/65 (35%), Gaps = 9/65 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C C A C AI + ++D KC CG C +ACP I Sbjct: 121 CSYGCLGCGDCVAACQFDAIHMNPETGLP---------EVDEAKCTACGACVKACPKAII 171 Query: 119 VEGPN 123 P Sbjct: 172 EIRPQ 176 Score = 40.9 bits (94), Expect = 0.069, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 26/76 (34%), Gaps = 8/76 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------DMIKCIYCGLCQ 110 E +C AC C CP I I + + + CI CG C Sbjct: 152 DEAKCTACGACVKACPKAIIEIRPQGKKSRRVYVSCVNKDKGAVARKACTVSCIGCGKCV 211 Query: 111 EACPVDAIVEGPNFEF 126 + CP +AI N + Sbjct: 212 KTCPFEAITLENNLAY 227 Score = 40.1 bits (92), Expect = 0.097, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 11/62 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C C CP +AIT+E+ ID KC C C E CP ++I Sbjct: 200 CTVSCIGCGKCVKTCPFEAITLENNLAY-----------IDPHKCKSCRKCVEVCPQNSI 248 Query: 119 VE 120 +E Sbjct: 249 IE 250 >gi|22328793|ref|NP_193656.2| ATRLI2; transporter [Arabidopsis thaliana] gi|75330288|sp|Q8LPJ4|AB2E_ARATH RecName: Full=ABC transporter E family member 2; Short=ABC transporter ABCE.2; Short=AtABCE2; AltName: Full=RNase L inhibitor-like protein 2; Short=AtRLI2; Short=AthaRLI2 gi|20466462|gb|AAM20548.1| RNase L inhibitor-like protein [Arabidopsis thaliana] gi|23198180|gb|AAN15617.1| RNase L inhibitor-like protein [Arabidopsis thaliana] gi|110742163|dbj|BAE99009.1| RNase L inhibitor-like protein [Arabidopsis thaliana] gi|332658760|gb|AEE84160.1| ABC transporter E family member 2 [Arabidopsis thaliana] Length = 605 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 24/56 (42%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 K C C +++G C + T + I CI CG+C + CP +AI Sbjct: 19 KKCRQECKKSCPVVKTGKLCIEVTVGSKLAFISEELCIGCGICVKKCPFEAIQIIN 74 >gi|99081341|ref|YP_613495.1| dihydropyrimidine dehydrogenase [Ruegeria sp. TM1040] gi|99037621|gb|ABF64233.1| dihydropyrimidine dehydrogenase (NADP+) / dihydrouracil dehydrogenase (NAD+) / dihydroorotate oxidase B, catalytic subunit [Ruegeria sp. TM1040] Length = 434 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 8/76 (10%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI C C A C E + + +C+ Sbjct: 330 QYLDLNYVTKAKISQDDCIKCGRCYAAC-------EDTSHQAIEMSADRTFTVKDDECVA 382 Query: 106 CGLCQEACPVD-AIVE 120 C LC CPV+ I Sbjct: 383 CNLCVNVCPVEGCITM 398 >gi|332527354|ref|ZP_08403410.1| 4Fe-4S ferredoxin [Rubrivivax benzoatilyticus JA2] gi|332111763|gb|EGJ11743.1| 4Fe-4S ferredoxin [Rubrivivax benzoatilyticus JA2] Length = 85 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 29/93 (31%), Positives = 40/93 (43%), Gaps = 20/93 (21%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC------GLCQEACP 114 + CI C +CE CP QAI++ RY+ID +C C C + CP Sbjct: 7 DECINCDVCEPECPNQAISMGDE-----------RYEIDPRRCTECVGHFDEPQCVQVCP 55 Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLNNGDR 147 V+ I P ETR++L + L G R Sbjct: 56 VECIPVNPEH---VETREQLRLKFQALQAGGAR 85 >gi|320584021|gb|EFW98233.1| RNAse L inhibitor-type ATP binding cassette protein [Pichia angusta DL-1] Length = 606 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 22/56 (39%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 K C C +++G C + + I CI CG+C + CP AI Sbjct: 19 KKCRQECRKSCPVVKTGKLCIEVAPTSKIAFISENLCIGCGICVKKCPFGAINIIN 74 >gi|322368098|ref|ZP_08042667.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haladaptatus paucihalophilus DX253] gi|320552114|gb|EFW93759.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haladaptatus paucihalophilus DX253] Length = 106 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 26/78 (33%), Gaps = 2/78 (2%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100 G + + CIA C CP P + + + Sbjct: 24 GPVDEPDKLGIHGTHVAVDFDLCIADGACLEDCPVDVFEWVDTPGHPESEEKADPAN--E 81 Query: 101 IKCIYCGLCQEACPVDAI 118 +CI C LC + CPVDAI Sbjct: 82 AQCIDCMLCVDVCPVDAI 99 >gi|307256193|ref|ZP_07537980.1| Electron transport complex protein rnfC [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|306865374|gb|EFM97270.1| Electron transport complex protein rnfC [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 661 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 34/107 (31%), Gaps = 3/107 (2%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 P E CI C C CP + + + + CI CG+C CP Sbjct: 379 PEPERSCIRCSSCSDACPVG-LLPQQLYWYARSEDHDKSKEYHLDACIECGVCAYVCP-S 436 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 I F E+ ++ R+E+ R + + R Sbjct: 437 YIPLIQYFRQEKAKITEIEEKAKKAEEAKARFEAREAR-LQKEKDAR 482 >gi|291526378|emb|CBK91965.1| 4Fe-4S binding domain [Eubacterium rectale DSM 17629] gi|291526823|emb|CBK92409.1| 4Fe-4S binding domain [Eubacterium rectale M104/1] Length = 56 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 11/61 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C++C C CP AI+ +Y ID C+ CG C CP AI + Sbjct: 7 DSCVSCGTCAGECPVGAISAGD-----------SQYVIDADSCLDCGTCAGVCPTGAISQ 55 Query: 121 G 121 G Sbjct: 56 G 56 >gi|187779552|ref|ZP_02996025.1| hypothetical protein CLOSPO_03148 [Clostridium sporogenes ATCC 15579] gi|187773177|gb|EDU36979.1| hypothetical protein CLOSPO_03148 [Clostridium sporogenes ATCC 15579] Length = 577 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 3/68 (4%) Query: 59 GEERCIACKLCEAICPAQAITIE---SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 ++CI C+ C +C G I C +CG C CP Sbjct: 149 DMDKCILCRRCITMCNEVQTVGTLSAIGRGFETVVAPAFSEAIKNTNCTFCGQCVSVCPT 208 Query: 116 DAIVEGPN 123 A+ E N Sbjct: 209 GALTEVNN 216 >gi|119484835|ref|ZP_01619317.1| 4Fe-4S ferredoxin, iron-sulfur binding [Lyngbya sp. PCC 8106] gi|119457653|gb|EAW38777.1| 4Fe-4S ferredoxin, iron-sulfur binding [Lyngbya sp. PCC 8106] Length = 399 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 21/103 (20%), Positives = 29/103 (28%), Gaps = 12/103 (11%) Query: 21 FLCLRYFFKAKTTINYPFEKGS---TSPRFRGEHALRRYPNGEERCIACKL--CEAICPA 75 + + + +P S + R+ C + CE +CPA Sbjct: 60 MVTASNWAEPARVRGFPAVSQPLLMVSFNDGEDPHFRKAEFDSTACPSDCWRPCETVCPA 119 Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 AIT G R C CG C CP I Sbjct: 120 NAITFNDPVNPSIGGVRDP-------LCYGCGRCIPICPSQII 155 >gi|167040768|ref|YP_001663753.1| Fe-S cluster domain-containing protein [Thermoanaerobacter sp. X514] gi|256750978|ref|ZP_05491861.1| Fe-S cluster domain protein [Thermoanaerobacter ethanolicus CCSD1] gi|300914806|ref|ZP_07132122.1| Fe-S cluster domain protein [Thermoanaerobacter sp. X561] gi|307723960|ref|YP_003903711.1| Fe-S cluster domain-containing protein [Thermoanaerobacter sp. X513] gi|166855008|gb|ABY93417.1| Fe-S cluster domain protein [Thermoanaerobacter sp. X514] gi|256750088|gb|EEU63109.1| Fe-S cluster domain protein [Thermoanaerobacter ethanolicus CCSD1] gi|300889741|gb|EFK84887.1| Fe-S cluster domain protein [Thermoanaerobacter sp. X561] gi|307581021|gb|ADN54420.1| Fe-S cluster domain protein [Thermoanaerobacter sp. X513] Length = 435 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 11/59 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 ++RC C C CP +AI + G I +CI CG C CP A Sbjct: 10 DKDRCRGCTNCIKRCPTEAIRVRDGKAM-----------IINERCIDCGECIRVCPYHA 57 >gi|77993214|dbj|BAE46794.1| bidirectional hydrogenase U subunit [Nostoc sp. PCC 7422] Length = 238 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 22/65 (33%), Gaps = 4/65 (6%) Query: 59 GEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLCQEACP 114 RC+ C C +C A T + R + T C CG C ACP Sbjct: 144 DHNRCVLCTRCVRVCDQIEGAHTWDMAGRGTNSHVITDLNQPWGTSDTCTSCGKCVNACP 203 Query: 115 VDAIV 119 A+ Sbjct: 204 TGALF 208 >gi|89094201|ref|ZP_01167143.1| oxidoreductase, FAD/iron-sulfur cluster-binding domain protein [Oceanospirillum sp. MED92] gi|89081456|gb|EAR60686.1| oxidoreductase, FAD/iron-sulfur cluster-binding domain protein [Oceanospirillum sp. MED92] Length = 945 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 12/70 (17%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRC-----------HDGTRRTVRYDIDM-IKCIY 105 + ++CI C CE +CP++ +T+ R + YD C Sbjct: 537 DIVDQCIECGFCERMCPSRNLTLSPRQRIIGKRELALLDGENQQTFADEYDYMAIDTCAG 596 Query: 106 CGLCQEACPV 115 CGLC CPV Sbjct: 597 CGLCSTVCPV 606 >gi|126464670|ref|YP_001045783.1| electron transport complex, RnfABCDGE type, C subunit [Rhodobacter sphaeroides ATCC 17029] gi|126106481|gb|ABN79011.1| electron transport complex, RnfABCDGE type, C subunit [Rhodobacter sphaeroides ATCC 17029] Length = 517 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 18/56 (32%), Gaps = 1/56 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 CI C C CP E R I ++ CI CG C CP Sbjct: 377 DTMPCIRCGRCAQACPVGLTPFELNARIQSEDLEGAG-RIGLLDCITCGCCSFTCP 431 Score = 35.1 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 9/13 (69%), Positives = 10/13 (76%) Query: 103 CIYCGLCQEACPV 115 CI CG C +ACPV Sbjct: 381 CIRCGRCAQACPV 393 >gi|321455606|gb|EFX66734.1| hypothetical protein DAPPUDRAFT_189585 [Daphnia pulex] Length = 610 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 20/56 (35%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 K C C + G C + I CI CG+C + CP +AI Sbjct: 29 KRCRQECKKSCPVVRMGKLCIEVAPTDRIAVISETLCIGCGICVKKCPFEAITIIN 84 >gi|300727612|ref|ZP_07061001.1| ferredoxin [Prevotella bryantii B14] gi|299775132|gb|EFI71735.1| ferredoxin [Prevotella bryantii B14] Length = 305 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 29/82 (35%), Gaps = 11/82 (13%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P + + + CI C C+ +C +AITIE+ Sbjct: 198 PKGRRVYVQCVNKDKGAVARKSCTAACIGCGKCQKVCKFEAITIENNLSY---------- 247 Query: 97 DIDMIKCIYCGLCQEACPVDAI 118 ID KC C C + CP AI Sbjct: 248 -IDFNKCRMCTKCVDECPTGAI 268 Score = 40.9 bits (94), Expect = 0.062, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 30/83 (36%), Gaps = 12/83 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI----------DMIKCIYCGL 108 EE+C +C C CP IE + G R V+ CI CG Sbjct: 172 DEEKCTSCGACTKACPR--HIIELRKKGPKGRRVYVQCVNKDKGAVARKSCTAACIGCGK 229 Query: 109 CQEACPVDAIVEGPNFEFATETR 131 CQ+ C +AI N + + Sbjct: 230 CQKVCKFEAITIENNLSYIDFNK 252 >gi|296159984|ref|ZP_06842804.1| formate dehydrogenase, alpha subunit [Burkholderia sp. Ch1-1] gi|295889730|gb|EFG69528.1| formate dehydrogenase, alpha subunit [Burkholderia sp. Ch1-1] Length = 982 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T +G + +C+ CG C Sbjct: 188 YFTYDASKCIVCNRCVRACEETQGTFALTIAGRGFESRVAASENVPFMESECVSCGACVA 247 Query: 112 ACPVDAIVE 120 ACP + E Sbjct: 248 ACPTATLQE 256 >gi|258591613|emb|CBE67914.1| Formate dehydrogenase, alpha subunit (fdhA2) [NC10 bacterium 'Dutch sediment'] Length = 899 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 23/87 (26%), Gaps = 6/87 (6%) Query: 38 FEKGSTSPRFRGEHA---LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 F++ R + + CI C C C + Sbjct: 120 FQRRHMPTLSRHTPVDESKSFFILDRDACILCGRCTVACDDVQQIGAIALLGRSSATKVG 179 Query: 95 RYD---IDMIKCIYCGLCQEACPVDAI 118 + + C CG C ACP AI Sbjct: 180 VFSDGSLASSVCTSCGQCVAACPTGAI 206 >gi|291278902|ref|YP_003495737.1| electron transport complex protein RnfC [Deferribacter desulfuricans SSM1] gi|290753604|dbj|BAI79981.1| electron transport complex protein RnfC [Deferribacter desulfuricans SSM1] Length = 435 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 17/56 (30%), Gaps = 1/56 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 CI C C CP + + + + CI CG C CP Sbjct: 353 NMHNCIRCGRCVEACPMGLVPAIMEQFALNEMYERLNEWHVLN-CIECGCCSYVCP 407 Score = 37.0 bits (84), Expect = 0.94, Method: Composition-based stats. Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 3/28 (10%) Query: 97 DIDMIKCIYCGLCQEACP---VDAIVEG 121 +++M CI CG C EACP V AI+E Sbjct: 351 NLNMHNCIRCGRCVEACPMGLVPAIMEQ 378 >gi|284163487|ref|YP_003401766.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haloterrigena turkmenica DSM 5511] gi|284013142|gb|ADB59093.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Haloterrigena turkmenica DSM 5511] Length = 107 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 2/65 (3%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + CIA C CP P + + + +CI C LC + C Sbjct: 37 THVAVDFDLCIADGACLEDCPVDVFEWVETPGHPESEEKADPAN--EAQCIDCMLCVDVC 94 Query: 114 PVDAI 118 PVDAI Sbjct: 95 PVDAI 99 >gi|289192279|ref|YP_003458220.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus sp. FS406-22] gi|288938729|gb|ADC69484.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus sp. FS406-22] Length = 82 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 24/68 (35%), Gaps = 7/68 (10%) Query: 60 EERCIACKLCEAICPAQAITIES-------GPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 ERC C C CP A E+ ++ C CG C EA Sbjct: 10 PERCHGCGNCVIACPVNAKHPETWGGKGPYSDDVVIRVENGTVTVVNQDLCGGCGACIEA 69 Query: 113 CPVDAIVE 120 CPV+AI Sbjct: 70 CPVNAIEL 77 >gi|260437855|ref|ZP_05791671.1| conserved domain protein [Butyrivibrio crossotus DSM 2876] gi|292809880|gb|EFF69085.1| conserved domain protein [Butyrivibrio crossotus DSM 2876] Length = 56 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 11/58 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C++C C CPA AI++ Y+ID C+ CG C+ ACPV AI Sbjct: 7 DSCVSCGSCAGGCPAGAISLGD-----------SHYEIDADTCLSCGACESACPVGAI 53 >gi|288573731|ref|ZP_06392088.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569472|gb|EFC91029.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Dethiosulfovibrio peptidovorans DSM 11002] Length = 365 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 1/58 (1%) Query: 61 ERCIACKLC-EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 ++C+ C +C + + + G + V D +C CG C CPV A Sbjct: 16 DKCVDCGMCLKGCIMSDQLEEGPGKVVSHFLKNGVIEDDWPFRCSLCGYCSSVCPVGA 73 >gi|226949091|ref|YP_002804182.1| iron hydrogenase 1 [Clostridium botulinum A2 str. Kyoto] gi|226843824|gb|ACO86490.1| iron hydrogenase 1 [Clostridium botulinum A2 str. Kyoto] Length = 577 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 22/68 (32%), Gaps = 3/68 (4%) Query: 59 GEERCIACKLCEAICPAQAITIE---SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 ++CI C+ C +C G I C +CG C CP Sbjct: 149 DMDKCILCRRCITMCNEVQTVGTLSAIGRGFETVVAPAFSEAIKNTNCTFCGQCVSVCPT 208 Query: 116 DAIVEGPN 123 A+ E N Sbjct: 209 GALTEVNN 216 >gi|209809816|ref|YP_002265355.1| putative 4Fe-4S ferredoxin, iron-sulfur binding [Aliivibrio salmonicida LFI1238] gi|208011379|emb|CAQ81838.1| putative 4Fe-4S ferredoxin, iron-sulfur binding [Aliivibrio salmonicida LFI1238] Length = 303 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 28/94 (29%), Gaps = 20/94 (21%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 P+ C C C CP A+T + P + C C C + CP Sbjct: 51 HNPHTINHCDHCGDCVEPCPTGALTFDDSPSRKVIW--------NEALCTQCDKCIDVCP 102 Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLNNGDRW 148 + + Y E+LL ++ Sbjct: 103 ------------SKSNPKITTYSVEKLLELTKKY 124 >gi|254452317|ref|ZP_05065754.1| dihydroorotate dehydrogenase family protein [Octadecabacter antarcticus 238] gi|198266723|gb|EDY90993.1| dihydroorotate dehydrogenase family protein [Octadecabacter antarcticus 238] Length = 434 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 8/82 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117 ++ CI+C C A C E + + +C+ C LC + CPV D Sbjct: 343 NQDDCISCGRCYAAC-------EDTSHQAIAMSEDRTFSVIDAECVACNLCVDVCPVEDC 395 Query: 118 IVEGPNFEFATETRQELYYDKE 139 I T+ R KE Sbjct: 396 ITMVALAPGTTDPRTGKVVQKE 417 >gi|170754223|ref|YP_001781834.1| iron-sulfur binding protein [Clostridium botulinum B1 str. Okra] gi|169119435|gb|ACA43271.1| CobQ/CobB/MinD/ParA family protein [Clostridium botulinum B1 str. Okra] Length = 281 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 22/65 (33%), Gaps = 15/65 (23%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ CI C CE +C AI ID C CG C CP +AI Sbjct: 63 DEDICIKCTECELVCKFDAIKNLK---------------IDPFLCEGCGACTLICPQNAI 107 Query: 119 VEGPN 123 Sbjct: 108 KLEDE 112 >gi|168232096|ref|ZP_02657154.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|194472499|ref|ZP_03078483.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|194458863|gb|EDX47702.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|205333575|gb|EDZ20339.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] Length = 287 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 21/73 (28%), Gaps = 11/73 (15%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C C C CP I + I +C CG C CP A+ Sbjct: 190 PQECRMCGACWRSCPENVIQFDDN-----------TLTIVAARCTGCGGCAAVCPHQALR 238 Query: 120 EGPNFEFATETRQ 132 + E + Sbjct: 239 LRFDVEPTSTRHS 251 Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 11/50 (22%) Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C +CPAQA ++ G ID +CI CG C CPVDAI Sbjct: 29 CADVCPAQAFSLAQGQVS-----------IDTTRCIACGDCLFVCPVDAI 67 >gi|154496500|ref|ZP_02035196.1| hypothetical protein BACCAP_00792 [Bacteroides capillosus ATCC 29799] gi|150274133|gb|EDN01224.1| hypothetical protein BACCAP_00792 [Bacteroides capillosus ATCC 29799] Length = 214 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 12/63 (19%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 Y E+CI C+ C ++CP I+ + +ID C++CG C CPV Sbjct: 153 YRIIPEKCIGCQGCRSVCPVNCISGT------------IPRNIDTAHCLHCGNCLSICPV 200 Query: 116 DAI 118 A+ Sbjct: 201 GAV 203 Score = 38.5 bits (88), Expect = 0.32, Method: Composition-based stats. Identities = 11/26 (42%), Positives = 13/26 (50%) Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEG 121 Y I KCI C C+ CPV+ I Sbjct: 153 YRIIPEKCIGCQGCRSVCPVNCISGT 178 >gi|147918951|ref|YP_687323.1| heterodisulfide reductase, subunit A [uncultured methanogenic archaeon RC-I] gi|110622719|emb|CAJ37997.1| heterodisulfide reductase, subunit A [uncultured methanogenic archaeon RC-I] Length = 657 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 27/89 (30%), Positives = 36/89 (40%), Gaps = 12/89 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 EE C C +CE CP +AIT+ G R+ D C CG C +CP AI Sbjct: 581 NEEICAGCGVCERQCPYKAITML---NLEGGVRKANVND---AMCKGCGTCGGSCPGGAI 634 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDR 147 T +L + LL G++ Sbjct: 635 KMQH------FTTPQLIAQIDALLLGGEQ 657 >gi|332157995|ref|YP_004423274.1| ferredoxin [Pyrococcus sp. NA2] gi|331033458|gb|AEC51270.1| ferredoxin [Pyrococcus sp. NA2] Length = 168 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 35/99 (35%), Gaps = 13/99 (13%) Query: 24 LRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG 83 LR+ F T+ F R P +R I C C+ +CP AI +E+ Sbjct: 8 LRHGF---ITVEELFSIIPKPSEERLRKGPVAIPECPQR-IPCTPCKEVCPTNAIKMETP 63 Query: 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 +D KCI C LC + CP A Sbjct: 64 NDIPI---------VDYEKCIGCSLCVQICPGLAFFMVH 93 >gi|320355222|ref|YP_004196561.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein [Desulfobulbus propionicus DSM 2032] gi|320123724|gb|ADW19270.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfobulbus propionicus DSM 2032] Length = 243 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 28/100 (28%), Gaps = 17/100 (17%) Query: 27 FFKAKTTI-NYPFEKGSTSPRFRGEHALRRYPN----GEERCIACKLCEAICPAQAITIE 81 K T N P E F + R E C C C +CP AI E Sbjct: 153 ILKKIQTASNIPNEPLYVPGNFPYKEVQMRASIAPSVNEALCSRCGECALVCPTGAIDRE 212 Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 + CI C C + CP A G Sbjct: 213 NPVSTSK------------ELCIRCCACVKTCPNGAKAFG 240 >gi|301062088|ref|ZP_07202789.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein [delta proteobacterium NaphS2] gi|300443814|gb|EFK07878.1| CoB--CoM heterodisulfide reductase iron-sulfur subunit A family protein [delta proteobacterium NaphS2] Length = 1394 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 30/86 (34%), Gaps = 18/86 (20%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E+C AC +C CP I + ID C CG+C CP I Sbjct: 1323 DQEKCAACLVCVRSCPYNVPKINADGVSE----------IDPALCRGCGICVSECPAKVI 1372 Query: 119 VEGPNFEFATETRQELYYDK-ERLLN 143 G +E + K E LL Sbjct: 1373 QLGW-YE------DDQVMSKVEALLE 1391 Score = 34.3 bits (77), Expect = 5.7, Method: Composition-based stats. Identities = 10/18 (55%), Positives = 11/18 (61%) Query: 98 IDMIKCIYCGLCQEACPV 115 ID KC CG C + CPV Sbjct: 19 IDESKCTACGDCTDVCPV 36 >gi|307730641|ref|YP_003907865.1| formate dehydrogenase subunit alpha [Burkholderia sp. CCGE1003] gi|307585176|gb|ADN58574.1| formate dehydrogenase, alpha subunit [Burkholderia sp. CCGE1003] Length = 981 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T +G + +C+ CG C Sbjct: 187 YFTYDPAKCIVCNRCVRACEETQGTFALTIAGRGFESRVAASENQPFMESECVSCGACVA 246 Query: 112 ACPVDAIVE 120 ACP + E Sbjct: 247 ACPTATLQE 255 >gi|258406084|ref|YP_003198826.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfohalobium retbaense DSM 5692] gi|257798311|gb|ACV69248.1| quinone-interacting membrane-bound oxidoreductase, subunit B [Desulfohalobium retbaense DSM 5692] Length = 766 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 22/70 (31%), Gaps = 10/70 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + RC CK C CP A+ + ++ +C CG C A Sbjct: 549 MTYPIFNFTRCTQCKRCTEECPFGALDDDEKGTPLP----------NLARCRRCGTCMGA 598 Query: 113 CPVDAIVEGP 122 CP I Sbjct: 599 CPERVISFDN 608 >gi|219850873|ref|YP_002465305.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein [Methanosphaerula palustris E1-9c] gi|219545132|gb|ACL15582.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein [Methanosphaerula palustris E1-9c] Length = 417 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 25/75 (33%), Gaps = 9/75 (12%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH---------DGTRRTVRYDID 99 G+ L + RCI C C CP S + +R+ Sbjct: 279 GKERLDKILKETSRCIKCYQCIDQCPICYCVECSTKKPELVAPGVLPVPFMFHLIRFAHI 338 Query: 100 MIKCIYCGLCQEACP 114 C+ CG C+E CP Sbjct: 339 ADSCVNCGQCEEICP 353 >gi|161612713|ref|YP_001586678.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161362077|gb|ABX65845.1| hypothetical protein SPAB_00411 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 287 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 21/68 (30%), Gaps = 11/68 (16%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C C C CP I + I +C CG C CP A+ Sbjct: 190 PQECRMCGACWRSCPENVIQFDDN-----------TLTIAAARCTGCGGCAAVCPHQALR 238 Query: 120 EGPNFEFA 127 + E A Sbjct: 239 LRFDVEPA 246 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 20/50 (40%), Positives = 24/50 (48%), Gaps = 11/50 (22%) Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C +CPAQA ++ G ID +CI CG C CPVDAI Sbjct: 29 CADVCPAQAFSLAKGQVS-----------IDTTRCIACGDCLFVCPVDAI 67 >gi|33333732|gb|AAQ11981.1| dihydropyrimidine dehydrogenase [Dictyostelium discoideum] Length = 1009 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 19/75 (25%), Gaps = 8/75 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117 E++CI C C C + C C LC CPV Sbjct: 937 DEDKCINCGKCYMTCN-------DSGYQAIKFDGKTHIPLVTDLCTGCDLCLSVCPVPDC 989 Query: 118 IVEGPNFEFATETRQ 132 I P R Sbjct: 990 ITMVPRETIYVPDRG 1004 >gi|146279224|ref|YP_001169382.1| respiratory-chain NADH dehydrogenase domain-containing protein [Rhodobacter sphaeroides ATCC 17025] gi|145557465|gb|ABP72077.1| Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit [Rhodobacter sphaeroides ATCC 17025] Length = 188 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 10/58 (17%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C C CP AI + + + CI C C EACP +AI Sbjct: 111 DHCTGCMRCFKRCPTDAIIGANKQ----------IHTVVTDACIGCNACIEACPTEAI 158 >gi|332298930|ref|YP_004440852.1| Fe-S cluster domain protein [Treponema brennaborense DSM 12168] gi|332182033|gb|AEE17721.1| Fe-S cluster domain protein [Treponema brennaborense DSM 12168] Length = 584 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 25/74 (33%), Gaps = 11/74 (14%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 + L + C C C CP +AI +E+G I CI CG C Sbjct: 1 MNFLYPVYTEQTECQDCYKCIRRCPVKAIRVENG-----------HAKIISELCIVCGRC 49 Query: 110 QEACPVDAIVEGPN 123 CP A + Sbjct: 50 VINCPAHAKRSRDD 63 >gi|330835447|ref|YP_004410175.1| putative pyruvate: ferredoxin oxidoreductase, delta subunit [Metallosphaera cuprina Ar-4] gi|329567586|gb|AEB95691.1| putative pyruvate: ferredoxin oxidoreductase, delta subunit [Metallosphaera cuprina Ar-4] Length = 88 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 27/75 (36%), Gaps = 10/75 (13%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G + + E+C C+LC C I +E ID C CG+ Sbjct: 22 GTWRILKPVIHYEKCTRCRLCYFYCVENTIDLEKNLYPV----------IDYDYCKGCGV 71 Query: 109 CQEACPVDAIVEGPN 123 C + CPV AI Sbjct: 72 CAQVCPVAAIEMIKE 86 >gi|310658064|ref|YP_003935785.1| pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta [Clostridium sticklandii DSM 519] gi|308824842|emb|CBH20880.1| Pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit (modular protein) [Clostridium sticklandii] Length = 86 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 10/65 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ C+ C +C + CP +IT + Y ID C CG+C CP AI Sbjct: 30 NKDNCVECGICMSFCPVGSITGN----------KQKIYAIDYKFCKGCGICAYECPSKAI 79 Query: 119 VEGPN 123 Sbjct: 80 DMVKE 84 >gi|239904886|ref|YP_002951624.1| NADH-quinone oxidoreductase chain F [Desulfovibrio magneticus RS-1] gi|239794749|dbj|BAH73738.1| NADH-quinone oxidoreductase chain F [Desulfovibrio magneticus RS-1] Length = 490 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 16/44 (36%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + + Y I+ KC C LC + CPV+ I Sbjct: 418 HVTQKKCPAHVCTAMLTYTINPAKCTGCTLCTKVCPVECISGTK 461 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 10/67 (14%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 A+ Y +C C LC +CP + I+ + ID KCI CG C + Sbjct: 431 AMLTYTINPAKCTGCTLCTKVCPVECISGTKKQP----------HVIDASKCIKCGACYD 480 Query: 112 ACPVDAI 118 C D+I Sbjct: 481 KCKFDSI 487 >gi|226326553|ref|ZP_03802071.1| hypothetical protein PROPEN_00403 [Proteus penneri ATCC 35198] gi|225204978|gb|EEG87332.1| hypothetical protein PROPEN_00403 [Proteus penneri ATCC 35198] Length = 316 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 5/54 (9%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 ++C+ C C +CPA + + R D CI C C+E C Sbjct: 57 HDKCVDCGKCVDVCPAGVHYMTTNENGKQVHRVDRGVD-----CIGCRKCEEVC 105 Score = 35.1 bits (79), Expect = 3.3, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 13/48 (27%) Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +G + KC+ CG C + CP N Sbjct: 33 GCNIRCPWCSNPEGLSSEFQVMYSHDKCVDCGKCVDVCPAGVHYMTTN 80 >gi|218265299|ref|ZP_03478757.1| hypothetical protein PRABACTJOHN_04467 [Parabacteroides johnsonii DSM 18315] gi|218221524|gb|EEC94174.1| hypothetical protein PRABACTJOHN_04467 [Parabacteroides johnsonii DSM 18315] Length = 252 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 30/87 (34%), Gaps = 11/87 (12%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 KG+ + +G + E+ C C+ C +CP AI+I D Sbjct: 159 EMKGNFPYKVKGPSTPQAPVTDEDLCTQCEYCIDVCPVSAISIVDDRMFSD--------- 209 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNF 124 CI C C + CP A + Sbjct: 210 --PATCIKCCACVKECPEGARTFDTPY 234 Score = 35.1 bits (79), Expect = 3.1, Method: Composition-based stats. Identities = 9/29 (31%), Positives = 12/29 (41%) Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 C C C + CPV AI + F+ Sbjct: 181 EDLCTQCEYCIDVCPVSAISIVDDRMFSD 209 >gi|148380175|ref|YP_001254716.1| 4Fe-4S cluster containing ParA family ATPase protein [Clostridium botulinum A str. ATCC 3502] gi|153934264|ref|YP_001384474.1| iron-sulfur binding protein [Clostridium botulinum A str. ATCC 19397] gi|153936550|ref|YP_001387990.1| iron-sulfur binding protein [Clostridium botulinum A str. Hall] gi|148289659|emb|CAL83763.1| 4Fe-4S cluster containing ParA family ATPase protein [Clostridium botulinum A str. ATCC 3502] gi|152930308|gb|ABS35808.1| CobQ/CobB/MinD/ParA family protein [Clostridium botulinum A str. ATCC 19397] gi|152932464|gb|ABS37963.1| CobQ/CobB/MinD/ParA family protein [Clostridium botulinum A str. Hall] Length = 281 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 22/65 (33%), Gaps = 15/65 (23%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ CI C CE +C AI ID C CG C CP +AI Sbjct: 63 DEDICIKCTECELVCKFDAIKNLK---------------IDPFLCEGCGACTLICPQNAI 107 Query: 119 VEGPN 123 Sbjct: 108 KLEDE 112 >gi|197117834|ref|YP_002138261.1| polyferredoxin benzoyl-CoA reductase electron transfer protein [Geobacter bemidjiensis Bem] gi|197087194|gb|ACH38465.1| polyferredoxin, putative benzoyl-CoA reductase electron transfer protein [Geobacter bemidjiensis Bem] Length = 1012 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 23/64 (35%), Gaps = 7/64 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C++C C C AI+ P+ ++ I C GLC CP AI Sbjct: 941 NENNCVSCGACITACKYGAISFVDTPKGKKAH-------VEPILCKGDGLCNAKCPTQAI 993 Query: 119 VEGP 122 Sbjct: 994 YLKH 997 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 49/157 (31%), Gaps = 39/157 (24%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITI-------ESGPRCHDGTRRTVRYDI 98 F+ + EE+C C +C CP + + + + Sbjct: 94 DFKVTLTKKPRYISEEKCTGCNICVDYCPVKIPDPFNQNLSENKAVHIYFSQAVPLVTYV 153 Query: 99 DMIKCIY-----CGLCQEACPVDAIVEGPNFE--------------FATET---RQELYY 136 D C+Y C +C AC +AI E ++T R + Y Sbjct: 154 DPETCLYLKEGKCQICVGACKTNAIDLHQKPETFQIEVGAIILSPGYSTFDPKLRNDFGY 213 Query: 137 DK----------ERLLNNGDRWESEIVRNIVTDSPYR 163 K ER+L +E E++R P++ Sbjct: 214 GKMQNVVTSLDFERILCATGPYEGEVLRPSDKKHPHK 250 >gi|77918997|ref|YP_356812.1| glycerol dehydratase activating enzyme [Pelobacter carbinolicus DSM 2380] gi|77545080|gb|ABA88642.1| glycerol dehydratase, cobalamin-independent, small subunit [Pelobacter carbinolicus DSM 2380] Length = 322 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 22/64 (34%), Gaps = 8/64 (12%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 CI C C +C A AI + ID +C CG C + C AI Sbjct: 71 NNCIGCGKCLEVCKAGAIRKDETGAKGL--------IIDRDRCTLCGQCAKFCYAGAINI 122 Query: 121 GPNF 124 + Sbjct: 123 IGRY 126 >gi|15668900|ref|NP_247704.1| putative ATPase RIL [Methanocaldococcus jannaschii DSM 2661] gi|2492577|sp|Q58129|Y719_METJA RecName: Full=Uncharacterized ABC transporter ATP-binding protein MJ0719 gi|1591435|gb|AAB98713.1| RNase L inhibitor [Methanocaldococcus jannaschii DSM 2661] Length = 600 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 27/70 (38%), Gaps = 1/70 (1%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G +R +RC K C C + G + + T + I + C CG+ Sbjct: 9 GGDFMRLAIIDYDRCQP-KKCSMECMKYCPGVRMGEKTIEIDENTGKPVISEVLCSGCGI 67 Query: 109 CQEACPVDAI 118 C + CP AI Sbjct: 68 CVKRCPFKAI 77 >gi|119355969|ref|YP_910613.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Chlorobium phaeobacteroides DSM 266] gi|119353318|gb|ABL64189.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Chlorobium phaeobacteroides DSM 266] Length = 517 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 31/85 (36%), Gaps = 16/85 (18%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 EKGS R LR E C+ AICP +A+ R Sbjct: 41 EKGSFPETRRYFTVLRCNHCAEPPCV------AICPVEALQKREDGIVDFDGR------- 87 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPN 123 +CI C C +ACP +A+ P Sbjct: 88 ---RCIGCKACAQACPYNALYIDPE 109 Score = 41.2 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 26/79 (32%), Gaps = 22/79 (27%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG---------LC 109 RCI CK C CP A+ I+ KC YC C Sbjct: 85 DGRRCIGCKACAQACPYNALYIDPE-------------THTSAKCNYCAHRKEVGLQPAC 131 Query: 110 QEACPVDAIVEGPNFEFAT 128 CP AIV G + ++ Sbjct: 132 VAICPQQAIVSGDLDDPSS 150 Score = 40.5 bits (93), Expect = 0.087, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 30/91 (32%), Gaps = 17/91 (18%) Query: 56 YPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTRRTVRYDIDMIKCIYCGL-- 108 + +CI C C C ++ G+ R +++C +C Sbjct: 5 FVIDARKCIGCHACTVACKSENQVPLGVNRTWVKYVEKGSFPETRRYFTVLRCNHCAEPP 64 Query: 109 CQEACPVDAIVEGPNFEFATETRQELYYDKE 139 C CPV+A+ R++ D + Sbjct: 65 CVAICPVEALQ----------KREDGIVDFD 85 >gi|134295063|ref|YP_001118798.1| formate dehydrogenase subunit alpha [Burkholderia vietnamiensis G4] gi|134138220|gb|ABO53963.1| formate dehydrogenase alpha subunit [Burkholderia vietnamiensis G4] Length = 983 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 23/76 (30%), Gaps = 3/76 (3%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCI 104 R + + + +CI C C C T + +C+ Sbjct: 180 RKDESNPYFTYDPSKCIVCNRCVRACEETQGTFALTIAARGFESRVAAGASESFMASECV 239 Query: 105 YCGLCQEACPVDAIVE 120 CG C ACP + E Sbjct: 240 SCGACVAACPTATLQE 255 >gi|325957922|ref|YP_004289388.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanobacterium sp. AL-21] gi|325329354|gb|ADZ08416.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanobacterium sp. AL-21] Length = 658 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 25/64 (39%), Gaps = 11/64 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ C C++C +CP A+ I++ C CG C ACP A+ Sbjct: 588 DEDVCGGCEVCIDLCPYGAVERIDEKAH-----------INVALCKGCGTCVGACPSGAL 636 Query: 119 VEGP 122 + Sbjct: 637 DQQH 640 Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 24/87 (27%), Gaps = 7/87 (8%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR-------CHDGTRRTVRYDI 98 F+ + E C C C +CP + + I Sbjct: 238 NFKVTVEKKPRYIDESVCTGCGSCTEVCPIEIPNYFDEGVGMVKATYIPFPQAVPLCATI 297 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFE 125 D CI C LC + C AI E Sbjct: 298 DKDYCIECKLCDQVCGNGAIKHDQEPE 324 >gi|315638317|ref|ZP_07893498.1| iron-sulfur cluster binding protein [Campylobacter upsaliensis JV21] gi|315481664|gb|EFU72287.1| iron-sulfur cluster binding protein [Campylobacter upsaliensis JV21] Length = 473 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 17/88 (19%), Positives = 21/88 (23%), Gaps = 10/88 (11%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ----------AITIESGPRCH 87 R + + RCI C C CP G Sbjct: 283 EVHIVLFDHHRSDMLAHKDYYEALRCIRCGACMNFCPVYDKIGGHSYQTIYPGPIGEVIS 342 Query: 88 DGTRRTVRYDIDMIKCIYCGLCQEACPV 115 + + C CG C E CPV Sbjct: 343 PNLFGMDQTGDILNFCSLCGRCSEVCPV 370 >gi|307211114|gb|EFN87340.1| ATP-binding cassette sub-family E member 1 [Harpegnathos saltator] Length = 608 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 21/56 (37%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 K C C + G C + + I CI CG+C + CP +AI Sbjct: 27 KRCRQECKRSCPVVRMGKLCIEVNPNSKIASISEELCIGCGICVKKCPFEAISIIN 82 >gi|260221131|emb|CBA29389.1| Electron transport complex protein rnfB [Curvibacter putative symbiont of Hydra magnipapillata] Length = 229 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 24/78 (30%), Positives = 31/78 (39%), Gaps = 10/78 (12%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 +P F E E+ CI C LC CP AI G+ + + I+ Sbjct: 70 PLNPEFGLEAPRTVVFIDEDWCIGCTLCIKACPTDAI---------IGSNKRMHTVIEP- 119 Query: 102 KCIYCGLCQEACPVDAIV 119 C C LC CPVD I+ Sbjct: 120 HCTGCELCLPVCPVDCIM 137 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 13/29 (44%), Positives = 15/29 (51%) Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 ID CI C LC +ACP DAI+ Sbjct: 82 TVVFIDEDWCIGCTLCIKACPTDAIIGSN 110 >gi|257437704|ref|ZP_05613459.1| conserved domain protein [Faecalibacterium prausnitzii A2-165] gi|257200011|gb|EEU98295.1| conserved domain protein [Faecalibacterium prausnitzii A2-165] Length = 56 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 11/64 (17%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C+ C CE CP A+TIE+G ++ CI CG C+ ACP Sbjct: 1 MAHKVSDACVGCGACEGACPVGAVTIENGVAV-----------VNADACIDCGACEGACP 49 Query: 115 VDAI 118 AI Sbjct: 50 TGAI 53 >gi|291288299|ref|YP_003505115.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio acetiphilus DSM 12809] gi|290885459|gb|ADD69159.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Denitrovibrio acetiphilus DSM 12809] Length = 55 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 25/64 (39%), Gaps = 11/64 (17%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C C +CE CP AI+ R ID C CG C E CP Sbjct: 1 MAYTINDSCTNCGVCEDECPVGAISEGDDVRV-----------IDADTCTDCGACAEVCP 49 Query: 115 VDAI 118 VDAI Sbjct: 50 VDAI 53 >gi|218780439|ref|YP_002431757.1| electron transport complex, RnfABCDGE type, B subunit [Desulfatibacillum alkenivorans AK-01] gi|218761823|gb|ACL04289.1| Putative electron transport complex, RnfB protein [Desulfatibacillum alkenivorans AK-01] Length = 672 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 18/66 (27%), Gaps = 10/66 (15%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 C+ C CP A+ + + KC CG C+ CP Sbjct: 131 MKECTVGCLGLGSCVKACPFGALEMGEDGLP----------RVIAEKCTGCGTCERVCPK 180 Query: 116 DAIVEG 121 I Sbjct: 181 GIINMS 186 >gi|219127698|ref|XP_002184067.1| phosphatase [Phaeodactylum tricornutum CCAP 1055/1] gi|217404298|gb|EEC44245.1| phosphatase [Phaeodactylum tricornutum CCAP 1055/1] Length = 623 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 16/52 (30%), Positives = 24/52 (46%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 K C C ++ G C + T ++ I CI CG+C + CP +AI Sbjct: 13 KKCRQECKKSCPVVKLGKLCIEVTPKSKLAFISEPLCIGCGICVKKCPFEAI 64 >gi|213622070|ref|ZP_03374853.1| putative polyferredoxin [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 176 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 22/73 (30%), Gaps = 11/73 (15%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C C C CP I + I +C CG C CP A+ Sbjct: 79 PQECRMCGACWRSCPENVIQFDDD-----------TLTIAAARCTGCGGCAAVCPHQALR 127 Query: 120 EGPNFEFATETRQ 132 + E A+ Sbjct: 128 LRFDVEPASTRHS 140 >gi|218781978|ref|YP_002433296.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Desulfatibacillum alkenivorans AK-01] gi|218763362|gb|ACL05828.1| Pyruvate-ferredoxin oxidoreductase, alpha subunit [Desulfatibacillum alkenivorans AK-01] Length = 1173 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 28/91 (30%), Gaps = 18/91 (19%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV------------- 94 A+ + CI C C +CP AI + Sbjct: 675 VAIEVPEWIMDNCIQCNQCSFVCPHAAIRPFLLTEEEKSEAPDSFETLEAKGKGFDGLSF 734 Query: 95 RYDIDMIKCIYCGLCQEACP--VDAIVEGPN 123 R ++ + C CG C + CP A+V P Sbjct: 735 RIQVNTLDCQGCGNCADICPAKEKALVMRPI 765 Score = 34.3 bits (77), Expect = 5.2, Method: Composition-based stats. Identities = 13/60 (21%), Positives = 17/60 (28%), Gaps = 13/60 (21%) Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 M CI C C CP AI +E D +E+ + D Sbjct: 684 MDNCIQCNQCSFVCPHAAIRP-------------FLLTEEEKSEAPDSFETLEAKGKGFD 730 >gi|153814772|ref|ZP_01967440.1| hypothetical protein RUMTOR_00987 [Ruminococcus torques ATCC 27756] gi|317501321|ref|ZP_07959524.1| hypothetical protein HMPREF1026_01467 [Lachnospiraceae bacterium 8_1_57FAA] gi|331088354|ref|ZP_08337273.1| hypothetical protein HMPREF1025_00856 [Lachnospiraceae bacterium 3_1_46FAA] gi|145847803|gb|EDK24721.1| hypothetical protein RUMTOR_00987 [Ruminococcus torques ATCC 27756] gi|316897285|gb|EFV19353.1| hypothetical protein HMPREF1026_01467 [Lachnospiraceae bacterium 8_1_57FAA] gi|330408598|gb|EGG88064.1| hypothetical protein HMPREF1025_00856 [Lachnospiraceae bacterium 3_1_46FAA] Length = 204 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 11/58 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI CKLC ++CP + I I S P I+ C++CG C E CP I Sbjct: 152 KECIGCKLCYSVCPQKCIDISSVPV-----------TINQNHCLHCGRCAEICPKQCI 198 >gi|91203437|emb|CAJ71090.1| similar to NAD(P) oxidoreductase, FAD-containing subunit [Candidatus Kuenenia stuttgartiensis] Length = 700 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 24/89 (26%), Gaps = 10/89 (11%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 R + E C+ C C +CP +G Sbjct: 478 VREAQRCMNCGAGAYVDEHLCVGCITCVRVCPFDVPEFRNGEITAY----------IGGD 527 Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETR 131 C CGLC CP AI E + R Sbjct: 528 CQSCGLCIVECPAKAIRFKTPLEDSGRER 556 >gi|70607960|ref|YP_256830.1| pyruvate synthase delta chain [Sulfolobus acidocaldarius DSM 639] gi|68568608|gb|AAY81537.1| pyruvate synthase delta chain [Sulfolobus acidocaldarius DSM 639] Length = 88 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 26/75 (34%), Gaps = 11/75 (14%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G + + +CI CK C CP I + G +D C CG+ Sbjct: 24 GSWRVVKPVVDLSKCIGCKACFMFCPESTIVPKGGKV-----------TVDYEYCKGCGV 72 Query: 109 CQEACPVDAIVEGPN 123 C CPV AI Sbjct: 73 CSNVCPVKAISMVSE 87 >gi|242399356|ref|YP_002994780.1| Pyruvate:ferredoxin oxidoreductase (POR), subunit delta [Thermococcus sibiricus MM 739] gi|242265749|gb|ACS90431.1| Pyruvate:ferredoxin oxidoreductase (POR), subunit delta [Thermococcus sibiricus MM 739] Length = 105 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 10/75 (13%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G + +++CI C +C +CP AI ++ D C CG+ Sbjct: 39 GGWRVFMPKFDKDKCIRCFICYTLCPEPAIYLDEESYPVF----------DYDYCKGCGI 88 Query: 109 CQEACPVDAIVEGPN 123 C CP AI Sbjct: 89 CANECPTKAIEMVRE 103 >gi|239623412|ref|ZP_04666443.1| 4Fe-4S ferredoxin [Clostridiales bacterium 1_7_47_FAA] gi|239522378|gb|EEQ62244.1| 4Fe-4S ferredoxin [Clostridiales bacterium 1_7_47FAA] Length = 241 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 30/79 (37%), Gaps = 14/79 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC--QEACPVD 116 +E+CI C C C IT + I+ +C+ CG+C C D Sbjct: 6 NKEKCIGCGRCTDYCMLGCITRDGKKVS-----------INEEECVDCGVCLRAGVCAAD 54 Query: 117 AIVEGP-NFEFATETRQEL 134 AI NFE+ R + Sbjct: 55 AIYMPDENFEYPRAVRMQF 73 >gi|124485356|ref|YP_001029972.1| hypothetical protein Mlab_0531 [Methanocorpusculum labreanum Z] gi|124362897|gb|ABN06705.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Methanocorpusculum labreanum Z] Length = 367 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 11/60 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++CI C C CP I+I ID+ CI C +C CP AI Sbjct: 192 DKCIVCGACMNACPEFCISIAGKAVS-----------IDLDHCIGCLMCMNTCPEHAIDL 240 Score = 38.5 bits (88), Expect = 0.31, Method: Composition-based stats. Identities = 13/27 (48%), Positives = 13/27 (48%) Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAI 118 T R I KCI CG C ACP I Sbjct: 183 HTTRPMILEDKCIVCGACMNACPEFCI 209 >gi|94265660|ref|ZP_01289401.1| Nitroreductase:4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium MLMS-1] gi|93453831|gb|EAT04197.1| Nitroreductase:4Fe-4S ferredoxin, iron-sulfur binding [delta proteobacterium MLMS-1] Length = 273 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 11/66 (16%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + + +ERCI C C CP IT++ P+ + CI C C Sbjct: 1 MLNFRVDQERCIQCGECAQDCPTGVITLDDYPQISN-----------EAGCIQCQHCLAI 49 Query: 113 CPVDAI 118 CP A+ Sbjct: 50 CPTAAL 55 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 14/30 (46%) Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + + +D +CI CG C + CP I Sbjct: 1 MLNFRVDQERCIQCGECAQDCPTGVITLDD 30 >gi|2828296|emb|CAA16710.1| RNase L inhibitor-like protein [Arabidopsis thaliana] gi|7268716|emb|CAB78923.1| RNase L inhibitor-like protein [Arabidopsis thaliana] Length = 600 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 24/56 (42%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 K C C +++G C + T + I CI CG+C + CP +AI Sbjct: 19 KKCRQECKKSCPVVKTGKLCIEVTVGSKLAFISEELCIGCGICVKKCPFEAIQIIN 74 >gi|91784828|ref|YP_560034.1| NAD-dependent formate dehydrogenase, alpha subunit [Burkholderia xenovorans LB400] gi|91688782|gb|ABE31982.1| formate dehydrogenase alpha subunit [Burkholderia xenovorans LB400] Length = 982 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T +G + +C+ CG C Sbjct: 188 YFTYDASKCIVCNRCVRACEETQGTFALTIAGRGFESRVAASENVPFMESECVSCGACVA 247 Query: 112 ACPVDAIVE 120 ACP + E Sbjct: 248 ACPTATLQE 256 >gi|45201221|ref|NP_986791.1| AGR125Wp [Ashbya gossypii ATCC 10895] gi|44986075|gb|AAS54615.1| AGR125Wp [Ashbya gossypii ATCC 10895] Length = 607 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 22/56 (39%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 K C C +++G C + + I CI CG+C + CP AI Sbjct: 19 KKCRQECKRSCPVVKTGKLCIEVAPTSKVAFISENLCIGCGICVKKCPFGAITIIN 74 >gi|20093032|ref|NP_619107.1| hypothetical protein MA4242 [Methanosarcina acetivorans C2A] gi|19918354|gb|AAM07587.1| conserved hypothetical protein [Methanosarcina acetivorans C2A] Length = 284 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 19/64 (29%), Gaps = 11/64 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ERC C C + C A+ C CG C CP AI Sbjct: 62 DPERCALCGNCASFCKFNALAALPNKILSF-----------PSLCHGCGGCSFVCPAGAI 110 Query: 119 VEGP 122 E P Sbjct: 111 DEKP 114 >gi|90422214|ref|YP_530584.1| thiamine pyrophosphate enzyme-like TPP-binding [Rhodopseudomonas palustris BisB18] gi|90104228|gb|ABD86265.1| thiamine pyrophosphate enzyme-like TPP-binding [Rhodopseudomonas palustris BisB18] Length = 606 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 6/59 (10%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 +C AC+ C + + + +G R ID CI C LC + C VD I Sbjct: 548 QCTACQSCMNL---GCPALTWSDQWFEGRHRVK---IDPALCIGCTLCAQVCTVDCIKI 600 >gi|114566964|ref|YP_754118.1| ferridoxin [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337899|gb|ABI68747.1| ferridoxin [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 140 Score = 43.5 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 9/66 (13%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 E+ CI C C + CP +A++I+ R ++ + KC+ CG+C + CP A Sbjct: 79 WQEDICIQCGACASFCPTEALSID---------RDSMLVSFENSKCVVCGMCLDCCPTRA 129 Query: 118 IVEGPN 123 I Sbjct: 130 IKLHFE 135 >gi|328789971|ref|XP_623630.2| PREDICTED: ATP-binding cassette sub-family E member 1 isoform 1 [Apis mellifera] Length = 583 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 21/56 (37%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 K C C + G C + + I CI CG+C + CP +AI Sbjct: 27 KRCRQECKRSCPVVRMGKLCIEVNPNSKIASISEELCIGCGICVKKCPFEAISIIN 82 >gi|325969960|ref|YP_004246151.1| glutamate synthase (NADPH) [Spirochaeta sp. Buddy] gi|324025198|gb|ADY11957.1| Glutamate synthase (NADPH) [Spirochaeta sp. Buddy] Length = 501 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 9/64 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++RCI C++CE C ++ R D C+ C C CP A+ Sbjct: 15 NQDRCITCRVCERQCANLVHHYDAEK---------GRMTADESLCVNCHRCVSLCPTRAL 65 Query: 119 VEGP 122 Sbjct: 66 KIVK 69 >gi|301629981|ref|XP_002944110.1| PREDICTED: uncharacterized protein yeiA-like [Xenopus (Silurana) tropicalis] Length = 292 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 24/63 (38%), Gaps = 5/63 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117 ++ CI C C +C G R+ + +D +C+ C LC CPV Sbjct: 196 NQDACIQCGRCHVVCE-DTSHQAITFSKEGGMRK---FKVDEAECVGCNLCASICPVPEC 251 Query: 118 IVE 120 I Sbjct: 252 ITM 254 >gi|293400770|ref|ZP_06644915.1| conserved domain protein [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305796|gb|EFE47040.1| conserved domain protein [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 57 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 10/60 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI C C +CP A+++ + + D CI CG C ACPV+AI Sbjct: 6 NADTCIGCGACVGVCPVGALSMNADSKSEC----------DEGTCIDCGSCISACPVEAI 55 Score = 35.5 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 9/24 (37%), Positives = 13/24 (54%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVE 120 +++ CI CG C CPV A+ Sbjct: 4 NVNADTCIGCGACVGVCPVGALSM 27 >gi|241765113|ref|ZP_04763103.1| molybdopterin oxidoreductase [Acidovorax delafieldii 2AN] gi|241365264|gb|EER60099.1| molybdopterin oxidoreductase [Acidovorax delafieldii 2AN] Length = 936 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 5/64 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114 + CI C C C + + G + +D + C+ CG C +ACP Sbjct: 186 NLDACIQCNRCVRACREE-QVNDVIGYALRGADSKIVFDLDDPMAESTCVACGECVQACP 244 Query: 115 VDAI 118 A+ Sbjct: 245 TGAL 248 >gi|157375180|ref|YP_001473780.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella sediminis HAW-EB3] gi|189043390|sp|A8FUX9|RNFB_SHESH RecName: Full=Electron transport complex protein rnfB gi|157317554|gb|ABV36652.1| electron transport complex, RnfABCDGE type, B subunit [Shewanella sediminis HAW-EB3] Length = 189 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 25/84 (29%), Gaps = 10/84 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 + + EE CI C C CP AI + + + Sbjct: 90 VEPEPLSATEEVQVKKVAYIREEECIGCTKCIQACPVDAILGSGK----------LMHTV 139 Query: 99 DMIKCIYCGLCQEACPVDAIVEGP 122 C C LC CPVD I P Sbjct: 140 ITDYCTGCDLCVAPCPVDCIDMLP 163 >gi|148379807|ref|YP_001254348.1| [Fe] hydrogenase [Clostridium botulinum A str. ATCC 3502] gi|153932525|ref|YP_001384105.1| [Fe] hydrogenase [Clostridium botulinum A str. ATCC 19397] gi|153935257|ref|YP_001387645.1| [Fe] hydrogenase [Clostridium botulinum A str. Hall] gi|148289291|emb|CAL83387.1| putative catalytic subunit of iron-only hydrogenase [Clostridium botulinum A str. ATCC 3502] gi|152928569|gb|ABS34069.1| iron hydrogenase 1 [Clostridium botulinum A str. ATCC 19397] gi|152931171|gb|ABS36670.1| iron hydrogenase 1 [Clostridium botulinum A str. Hall] Length = 577 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 22/68 (32%), Gaps = 3/68 (4%) Query: 59 GEERCIACKLCEAICPAQAITIE---SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 ++CI C+ C IC G I C +CG C CP Sbjct: 149 DMDKCILCRRCITICNEVQTVGTLSAIGRGFETVVAPAFSEAIKNTNCTFCGQCVSVCPT 208 Query: 116 DAIVEGPN 123 A+ E N Sbjct: 209 GALTEVNN 216 >gi|153952794|ref|YP_001393559.1| hydrogenase [Clostridium kluyveri DSM 555] gi|219853459|ref|YP_002470581.1| hypothetical protein CKR_0116 [Clostridium kluyveri NBRC 12016] gi|146345675|gb|EDK32211.1| Predicted hydrogenase [Clostridium kluyveri DSM 555] gi|219567183|dbj|BAH05167.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 447 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 9/56 (16%) Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 CE CP AI I ID KC CG C +ACP +I++ F Sbjct: 93 CEKSCPFDAIFIHKEKNHPF---------IDKDKCTDCGFCVDACPNGSIMDTVQF 139 >gi|119717157|ref|YP_924122.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Nocardioides sp. JS614] gi|119537818|gb|ABL82435.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Nocardioides sp. JS614] Length = 505 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 26/79 (32%), Gaps = 22/79 (27%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG---------LC 109 ERCI CK C CP AI I++ KC C C Sbjct: 85 DNERCIGCKSCMQACPYDAIYIDAE-------------THTAAKCNMCAHRVDEGLEPAC 131 Query: 110 QEACPVDAIVEGPNFEFAT 128 CP +I G + ++ Sbjct: 132 VVVCPTHSIWVGDLDDPSS 150 Score = 42.0 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 31/93 (33%), Gaps = 10/93 (10%) Query: 33 TINYPFEKGSTSPRFRGEHALRR---YPNGEERC--IACKLCEAICPAQAITIESGPRCH 87 T+ E +FR +P+ + C C A ++ P Sbjct: 19 TVACKTEHEVPLGQFRTWVKYVDGGTFPDTTRSFGVMRCNHC-----TDAPCVKICPTQA 73 Query: 88 DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 R D D +CI C C +ACP DAI Sbjct: 74 LFKREDGIVDFDNERCIGCKSCMQACPYDAIYI 106 Score = 40.5 bits (93), Expect = 0.072, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 28/97 (28%), Gaps = 17/97 (17%) Query: 56 YPNGEERCIACKLCEAICPAQA-----ITIESGPRCHDGTRRTVRYDIDMIKCIYC--GL 108 + + CI C C C + GT +++C +C Sbjct: 5 FAIDQRTCIGCHACTVACKTEHEVPLGQFRTWVKYVDGGTFPDTTRSFGVMRCNHCTDAP 64 Query: 109 CQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNG 145 C + CP A+ R++ D + G Sbjct: 65 CVKICPTQAL----------FKREDGIVDFDNERCIG 91 >gi|118576316|ref|YP_876059.1| ferredoxin [Cenarchaeum symbiosum A] gi|118194837|gb|ABK77755.1| ferredoxin [Cenarchaeum symbiosum A] Length = 309 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 22/67 (32%), Gaps = 5/67 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI C CP P R+ + CI+C C+ CP AI Sbjct: 246 DFDICIGDGACIDACPVDVYEWFDTPGNAGSNRKPIMAR--EPDCIFCLACEAVCPPKAI 303 Query: 119 VEGPNFE 125 FE Sbjct: 304 ---KIFE 307 >gi|77919232|ref|YP_357047.1| NAD-reducing iron-only hydrogenase large subunit [Pelobacter carbinolicus DSM 2380] gi|77545315|gb|ABA88877.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Pelobacter carbinolicus DSM 2380] Length = 585 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 7/85 (8%) Query: 59 GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115 ++CI C+ CE +C Q + SG +++++ C CG C CPV Sbjct: 148 DMDKCILCRRCETMCNDVQTCGVLSGVNRGFDAVVAPAFEMNLYDTVCTNCGQCTAVCPV 207 Query: 116 DAIVEGPNFEFATETRQELYYDKER 140 A+VE T + D E+ Sbjct: 208 GALVEND----HTWKVIDAIADPEK 228 >gi|56478500|ref|YP_160089.1| phenylglyoxylate:acceptor oxidoreductase [Aromatoleum aromaticum EbN1] gi|56314543|emb|CAI09188.1| phenylglyoxylate:acceptor oxidoreductase [Aromatoleum aromaticum EbN1] Length = 99 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 11/83 (13%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100 SP G+ +R ++C+ C +C CP Q + + +D ++ Sbjct: 26 TDISPMLPGDWRSQRPVVDRDKCVKCAVCWLYCPVQCVEEHAA-----------WFDFNL 74 Query: 101 IKCIYCGLCQEACPVDAIVEGPN 123 C CG+C CP AI Sbjct: 75 NTCKGCGICATECPQRAITMIGE 97 >gi|294673542|ref|YP_003574158.1| RnfABCDGE type electron transport complex subunit B [Prevotella ruminicola 23] gi|294472470|gb|ADE81859.1| electron transport complex, RnfABCDGE type, B subunit [Prevotella ruminicola 23] Length = 293 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 25/82 (30%), Gaps = 11/82 (13%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P + + CI C CE C AIT+E+ Sbjct: 198 PKNRRVFVSCVNKDKGPVAMKACAVSCIGCGKCEKECNFGAITVENNLAY---------- 247 Query: 97 DIDMIKCIYCGLCQEACPVDAI 118 ID KC C C CP AI Sbjct: 248 -IDHTKCRLCRKCVTVCPKHAI 268 Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 24/60 (40%), Gaps = 9/60 (15%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C C A C AI++ ++D KC CG C +ACP + I Sbjct: 145 CLGCGDCVAACQFGAISLNPETGIP---------EVDDEKCTSCGACVKACPRNIIELRK 195 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 8/81 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCH--------DGTRRTVRYDIDMIKCIYCGLCQ 110 +E+C +C C CP I + + + + V + CI CG C+ Sbjct: 172 DDEKCTSCGACVKACPRNIIELRKKGPKNRRVFVSCVNKDKGPVAMKACAVSCIGCGKCE 231 Query: 111 EACPVDAIVEGPNFEFATETR 131 + C AI N + T+ Sbjct: 232 KECNFGAITVENNLAYIDHTK 252 >gi|291523914|emb|CBK89501.1| Uncharacterized conserved protein [Eubacterium rectale DSM 17629] gi|291528625|emb|CBK94211.1| Uncharacterized conserved protein [Eubacterium rectale M104/1] Length = 202 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 11/58 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI CKLC ++CP + I I S P I+ C++CG C E CP I Sbjct: 152 KDCIGCKLCYSVCPQKCIDISSVPV-----------TINQNHCLHCGRCAEICPKQCI 198 >gi|289670256|ref|ZP_06491331.1| ferredoxin [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 139 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 27/81 (33%), Positives = 31/81 (38%), Gaps = 11/81 (13%) Query: 43 TSPRFRGEHAL-RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 R RG H L + E CI C C CP AI G + + I + Sbjct: 67 PYDRSRGTHKLPQVAWIVEADCIGCTKCIQACPVDAIV---------GGAKHMHTVIAPL 117 Query: 102 KCIYCGLCQEACPVDAIVEGP 122 C C LC ACPVD I P Sbjct: 118 -CTGCELCLPACPVDCIELHP 137 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 15/38 (39%) Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 R + I CI C C +ACPVDAI Sbjct: 66 CPYDRSRGTHKLPQVAWIVEADCIGCTKCIQACPVDAI 103 >gi|323526975|ref|YP_004229128.1| formate dehydrogenase subunit alpha [Burkholderia sp. CCGE1001] gi|323383977|gb|ADX56068.1| formate dehydrogenase, alpha subunit [Burkholderia sp. CCGE1001] Length = 981 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T +G + +C+ CG C Sbjct: 187 YFTYDPAKCIVCNRCVRACEETQGTFALTIAGRGFESRVAASENQPFMESECVSCGACVA 246 Query: 112 ACPVDAIVE 120 ACP + E Sbjct: 247 ACPTATLQE 255 >gi|257790894|ref|YP_003181500.1| nitroreductase [Eggerthella lenta DSM 2243] gi|317488395|ref|ZP_07946949.1| nitroreductase [Eggerthella sp. 1_3_56FAA] gi|325830519|ref|ZP_08163972.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1] gi|257474791|gb|ACV55111.1| nitroreductase [Eggerthella lenta DSM 2243] gi|316912499|gb|EFV34054.1| nitroreductase [Eggerthella sp. 1_3_56FAA] gi|325487428|gb|EGC89869.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1] Length = 263 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 24/70 (34%), Gaps = 13/70 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C C + +E G CI CG C CP A+ Sbjct: 6 DERYCIGCGRCVDDCVGANLEVEGVTARVKG------------LCILCGHCVAVCPTGAV 53 Query: 119 VEGPNFEFAT 128 P+++ A Sbjct: 54 SI-PSYDMAD 62 >gi|224023701|ref|ZP_03642067.1| hypothetical protein BACCOPRO_00417 [Bacteroides coprophilus DSM 18228] gi|224016923|gb|EEF74935.1| hypothetical protein BACCOPRO_00417 [Bacteroides coprophilus DSM 18228] Length = 445 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 26/89 (29%), Positives = 33/89 (37%), Gaps = 3/89 (3%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 KA I P KGS+ + RR + CI C C + CP Sbjct: 333 MMGKALANIEVPVCKGSSGVLVMNDKEARRA--EPQPCIRCAKCVSACPMGLEPFLLATC 390 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 G V +++ M CI CG CQ CP Sbjct: 391 SAHGDWERVEHEMIMS-CIECGSCQFTCP 418 >gi|206895204|ref|YP_002246388.1| inosine-5'-monophosphate dehydrogenase related protein viii [Coprothermobacter proteolyticus DSM 5265] gi|206737821|gb|ACI16899.1| inosine-5'-monophosphate dehydrogenase related protein viii [Coprothermobacter proteolyticus DSM 5265] Length = 443 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 22/90 (24%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 YF + + P E + + C+ C LC ++CP A+ + + Sbjct: 366 YFHEPRIVKKLPQE-----------LEGKPLTKDDPTCVDCGLCTSVCPTGALKLINAKL 414 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 C CGLC + CPV Sbjct: 415 AFTK-----------EACTKCGLCSDICPV 433 Score = 34.7 bits (78), Expect = 4.5, Method: Composition-based stats. Identities = 8/20 (40%), Positives = 10/20 (50%) Query: 103 CIYCGLCQEACPVDAIVEGP 122 C+ CGLC CP A+ Sbjct: 392 CVDCGLCTSVCPTGALKLIN 411 >gi|167044386|gb|ABZ09063.1| putative ABC transporter [uncultured marine crenarchaeote HF4000_APKG6D3] Length = 592 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 1/64 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E C K C C +SG C T + ID C CG+C + CP +AI Sbjct: 9 DKELCQP-KKCGLECIKYCPVNKSGADCIVLNEETNKALIDEDICNGCGICVKVCPFEAI 67 Query: 119 VEGP 122 Sbjct: 68 TIVN 71 >gi|167043306|gb|ABZ08011.1| putative ABC transporter [uncultured marine crenarchaeote HF4000_ANIW141M18] Length = 592 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 1/64 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E C K C C +SG C T + ID C CG+C + CP +AI Sbjct: 9 DKELCQP-KKCGLECIKYCPVNKSGADCIVLNEETNKALIDEDICNGCGICVKVCPFEAI 67 Query: 119 VEGP 122 Sbjct: 68 TIVN 71 >gi|147677827|ref|YP_001212042.1| coenzyme F420-reducing hydrogenase, beta subunit [Pelotomaculum thermopropionicum SI] gi|146273924|dbj|BAF59673.1| coenzyme F420-reducing hydrogenase, beta subunit [Pelotomaculum thermopropionicum SI] Length = 404 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 34/115 (29%), Gaps = 17/115 (14%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 L+ G C AC C +CP QA+ C CG+C Sbjct: 5 FGELQEKVIGRGLCTACGTCAGVCPVQAVDWAEMDGEPVPE--------LAGACANCGIC 56 Query: 110 QEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDR-WESEIVRNIVTDSPYR 163 CP E ++ + +ER D + E + D P R Sbjct: 57 PAVCPGA--------EVNIPVLEKFIFGRERPEEIPDLGFYREALLAWSADLPVR 103 >gi|326204028|ref|ZP_08193889.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782] gi|325985795|gb|EGD46630.1| Radical SAM domain protein [Clostridium papyrosolvens DSM 2782] Length = 303 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 22/76 (28%), Gaps = 11/76 (14%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 + E RCI C C IC + R + + Sbjct: 31 RCPWCHSPHSREVESPILFNEVRCINCHNCMEICIQNVHSF-----------RNGIHMVQ 79 Query: 100 MIKCIYCGLCQEACPV 115 CI CG C EACP Sbjct: 80 RKNCIKCGRCIEACPT 95 >gi|325262535|ref|ZP_08129272.1| ferredoxin 2 [Clostridium sp. D5] gi|324032367|gb|EGB93645.1| ferredoxin 2 [Clostridium sp. D5] Length = 570 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 11/65 (16%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 +R + +C C C C +AI++++ I CI CG C E Sbjct: 1 MRVIDFKDAKCRHCYKCVRYCMVKAISVQNEQAH-----------ILKDHCINCGRCMEI 49 Query: 113 CPVDA 117 CP +A Sbjct: 50 CPQNA 54 >gi|307266701|ref|ZP_07548229.1| Fe-S cluster domain protein [Thermoanaerobacter wiegelii Rt8.B1] gi|306918303|gb|EFN48549.1| Fe-S cluster domain protein [Thermoanaerobacter wiegelii Rt8.B1] Length = 435 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 11/59 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 ++RC C C CP +AI + G I +CI CG C CP A Sbjct: 10 DKDRCRGCTNCIKRCPTEAIRVRDGKA-----------RIINERCIDCGECIRVCPYHA 57 >gi|296125194|ref|YP_003632446.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein [Brachyspira murdochii DSM 12563] gi|296017010|gb|ADG70247.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein [Brachyspira murdochii DSM 12563] Length = 867 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 23/65 (35%), Gaps = 6/65 (9%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C +C ICP AI + + I+ KC CG+C + C Sbjct: 12 SECTGCSVCYHICPHNAINMIENEKGFYNPV------INKDKCTNCGICVKQCHALNDNF 65 Query: 121 GPNFE 125 +E Sbjct: 66 KTEYE 70 Score = 33.5 bits (75), Expect = 9.1, Method: Composition-based stats. Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 4/40 (10%) Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKER 140 +C C +C CP +AI N E +K++ Sbjct: 12 SECTGCSVCYHICPHNAINMIEN-EKGFYNP---VINKDK 47 >gi|218961482|ref|YP_001741257.1| putative [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional hydrogenase), subunit alpha (hymC-like) [Candidatus Cloacamonas acidaminovorans] gi|167730139|emb|CAO81051.1| putative [Fe] hydrogenase (Fe-only hydrogenase) (ferredoxin bidirectional hydrogenase), subunit alpha (hymC-like) [Candidatus Cloacamonas acidaminovorans] Length = 435 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 23/58 (39%), Gaps = 11/58 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C C +CP +AI + +ID +C+ CG C C AI Sbjct: 15 DNCTGCTACVRVCPTEAIRVRDHKA-----------NIDPYRCVDCGNCVNVCRFHAI 61 Score = 37.8 bits (86), Expect = 0.45, Method: Composition-based stats. Identities = 8/32 (25%), Positives = 10/32 (31%) Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + I C C C CP +AI Sbjct: 5 KYFHALQILADNCTGCTACVRVCPTEAIRVRD 36 >gi|153854059|ref|ZP_01995392.1| hypothetical protein DORLON_01383 [Dorea longicatena DSM 13814] gi|149753441|gb|EDM63372.1| hypothetical protein DORLON_01383 [Dorea longicatena DSM 13814] Length = 56 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 23/67 (34%), Positives = 29/67 (43%), Gaps = 11/67 (16%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C++C CEA CP AI + Y+ID C+ CG C CP Sbjct: 1 MAHVIGDECVSCGSCEAECPVGAIAQGAD-----------HYEIDADACVDCGACAAQCP 49 Query: 115 VDAIVEG 121 V AI EG Sbjct: 50 VGAISEG 56 >gi|189423931|ref|YP_001951108.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter lovleyi SZ] gi|189420190|gb|ACD94588.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter lovleyi SZ] Length = 665 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 30/81 (37%), Gaps = 7/81 (8%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C+ C C+ +C A+ E R G ++ C CG CQ CP ++ Sbjct: 592 NSCVGCFACKKVCAYGAVE-EKEIRDRQGNLIKTVAYVNPGVCAGCGTCQATCPSKSV-- 648 Query: 121 GPNFEFATETRQELYYDKERL 141 E T +++ E L Sbjct: 649 ----ELDGYTDEQIVAMIEAL 665 >gi|308810905|ref|XP_003082761.1| 68 kDa protein HP68 (ISS) [Ostreococcus tauri] gi|116061230|emb|CAL56618.1| 68 kDa protein HP68 (ISS) [Ostreococcus tauri] Length = 944 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 3/68 (4%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA---IVEGPN 123 K C+ C ++ G C + + + + CI CG+C + CP +A I N Sbjct: 362 KKCKQECKRSCPVVKVGKLCIEVSPKDKIAFLSEELCIGCGICVKKCPFEALTIINLPKN 421 Query: 124 FEFATETR 131 E T R Sbjct: 422 LEKETTHR 429 >gi|160878704|ref|YP_001557672.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Clostridium phytofermentans ISDg] gi|160427370|gb|ABX40933.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium phytofermentans ISDg] Length = 749 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 10/102 (9%) Query: 28 FKAKTTINYPFEKGSTSPRFR----GEHALRRYPNGEERCIACKLCEAICPAQAITIESG 83 F+ + +K S R + + C C C +CP AI ++ Sbjct: 263 FRKRIKDFRKEQKKKLSQLIRLASYEMYVDCPTDIKKIECCGCTACREVCPYNAIEMKPD 322 Query: 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 + +D KC+ C LC++ C + +E Sbjct: 323 EEG------FIYPVVDHDKCVKCMLCKKVCVKRENPQTITYE 358 >gi|73669582|ref|YP_305597.1| ferredoxin [Methanosarcina barkeri str. Fusaro] gi|72396744|gb|AAZ71017.1| ferredoxin [Methanosarcina barkeri str. Fusaro] Length = 128 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 10/68 (14%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 R EE CI C C ++CP + + +D KCI CG+C + C Sbjct: 70 RPIHRDEEECIECGACISVCPMNVYSFDDSWNVL----------VDEKKCIQCGVCIKMC 119 Query: 114 PVDAIVEG 121 P A+ G Sbjct: 120 PHGALKLG 127 >gi|20808300|ref|NP_623471.1| MinD family protein [Thermoanaerobacter tengcongensis MB4] gi|254479165|ref|ZP_05092514.1| putative CobQ/CobB/MinD/ParA nucleotide binding domain protein [Carboxydibrachium pacificum DSM 12653] gi|20516903|gb|AAM25075.1| MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Thermoanaerobacter tengcongensis MB4] gi|214034893|gb|EEB75618.1| putative CobQ/CobB/MinD/ParA nucleotide binding domain protein [Carboxydibrachium pacificum DSM 12653] Length = 282 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 36/105 (34%), Gaps = 13/105 (12%) Query: 20 FFLCLRYFFKAKTTINYPFEKGSTSPR--FRGEHALRRYPNGEERCIACKLCEAICPAQA 77 L+ F + P +P + + + ++C C C C A Sbjct: 24 LAKTLKESFYVDCDVEEPNGYLFLNPEIEYEKDVNVLIPEIDYDKCTLCGECVKACRFGA 83 Query: 78 ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 +T ++ + +D C CG C E CP +AI E P Sbjct: 84 LTKL--------IKKILVFDH---LCHSCGACYEICPYNAIREVP 117 >gi|89895362|ref|YP_518849.1| hypothetical protein DSY2616 [Desulfitobacterium hafniense Y51] gi|89334810|dbj|BAE84405.1| hypothetical protein [Desulfitobacterium hafniense Y51] Length = 313 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 29/83 (34%), Gaps = 7/83 (8%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-- 96 E+ + LR +CI C C A C A A G + + Sbjct: 131 ERRRLPIEDSNPYILR----DLNKCILCGKCVATCGAVAERSVIGFVNRGFHAKVATFMD 186 Query: 97 -DIDMIKCIYCGLCQEACPVDAI 118 D+ C+YC C CPV A+ Sbjct: 187 TDLKDSTCVYCNRCVAVCPVGAL 209 >gi|167037871|ref|YP_001665449.1| Fe-S cluster domain-containing protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|320116288|ref|YP_004186447.1| Fe-S cluster domain-containing protein [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166856705|gb|ABY95113.1| Fe-S cluster domain protein [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|319929379|gb|ADV80064.1| Fe-S cluster domain protein [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 435 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 11/59 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 ++RC C C CP +AI + G I +CI CG C CP A Sbjct: 10 DKDRCRGCTNCIKRCPTEAIRVRDGKA-----------RIINERCIDCGECIRVCPYHA 57 >gi|330861513|emb|CBX71725.1| hypothetical protein YEW_ER20270 [Yersinia enterocolitica W22703] Length = 444 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 31/117 (26%), Gaps = 28/117 (23%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQA------------------ITIES 82 + + A + C C C A CP A ++E Sbjct: 6 WAPPSGKKRNIAEDIPIWQPDLCTQCNHCVAACPHSAIRAKVIQPEAMSGAPDSLQSLEV 65 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV--------DAIVEGPNFEFATETR 131 R G + + C C LC E CP AI P E E + Sbjct: 66 KARDMRGQKY--VLQVAPEDCTGCNLCYEVCPAKDRQNPEIKAINMKPRLEHLVEEK 120 >gi|313898385|ref|ZP_07831922.1| pyruvate synthase [Clostridium sp. HGF2] gi|312956767|gb|EFR38398.1| pyruvate synthase [Clostridium sp. HGF2] Length = 1168 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 27/83 (32%), Gaps = 16/83 (19%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQ-------------AITIESGPRCHDGTRR---TV 94 A++ E CI C +C +CP A +E G Sbjct: 678 IAVQVPTWHPENCIQCGICSFVCPHATIRPFLLTEEEVAAAPMEFETITPMGKGVENLKY 737 Query: 95 RYDIDMIKCIYCGLCQEACPVDA 117 R + C+ CGLC CP A Sbjct: 738 RIQVTPANCVGCGLCAVECPGKA 760 Score = 34.3 bits (77), Expect = 5.3, Method: Composition-based stats. Identities = 8/20 (40%), Positives = 9/20 (45%) Query: 99 DMIKCIYCGLCQEACPVDAI 118 CI CG+C CP I Sbjct: 686 HPENCIQCGICSFVCPHATI 705 >gi|309389497|gb|ADO77377.1| electron transport complex, RnfABCDGE type, B subunit [Halanaerobium praevalens DSM 2228] Length = 329 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 23/64 (35%), Positives = 27/64 (42%), Gaps = 11/64 (17%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + E CIAC LC +CP AI I+ ID KC+ CG C E CP Sbjct: 212 KSCEVGCIACSLCAKVCPVDAIEIKDNLAV-----------IDYEKCVNCGKCAEKCPTG 260 Query: 117 AIVE 120 I Sbjct: 261 TIQF 264 Score = 42.0 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 30/66 (45%), Gaps = 10/66 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + + C+ C LC CP +AI E R+ ID KCI CGLC EA Sbjct: 268 MIEKVEINDNCVGCTLCARACPVEAIEGE----------VKNRHQIDQDKCIQCGLCFEA 317 Query: 113 CPVDAI 118 C V A+ Sbjct: 318 CNVKAV 323 Score = 40.9 bits (94), Expect = 0.063, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 24/60 (40%), Gaps = 9/60 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+C+ C C CP I E + + C+ C LC ACPV+AI Sbjct: 243 DYEKCVNCGKCAEKCPTGTIQFEG---------KMIEKVEINDNCVGCTLCARACPVEAI 293 Score = 40.5 bits (93), Expect = 0.082, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 5/80 (6%) Query: 57 PNGEERCIACKLCEAICPAQA-----ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 E+C AC C CP ++ ++ RC + + CI C LC + Sbjct: 167 QIDPEKCTACGKCITECPRNILLLAPMSAQNHIRCSSHNSGKIVRKSCEVGCIACSLCAK 226 Query: 112 ACPVDAIVEGPNFEFATETR 131 CPVDAI N + Sbjct: 227 VCPVDAIEIKDNLAVIDYEK 246 Score = 37.8 bits (86), Expect = 0.50, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 22/58 (37%), Gaps = 10/58 (17%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + + C+ CE++CP AI + ID KC CG C CP Sbjct: 137 KSCQYSCLGFGDCESVCPFDAIYMSENGLP----------QIDPEKCTACGKCITECP 184 >gi|310659217|ref|YP_003936938.1| hypothetical protein CLOST_1913 [Clostridium sticklandii DSM 519] gi|308825995|emb|CBH22033.1| conserved protein of unknown function [Clostridium sticklandii] Length = 1178 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 28/135 (20%), Positives = 43/135 (31%), Gaps = 33/135 (24%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAIT---------------IESGPRCHDGTR-RTV 94 A+ E CI C C +CP AI E+ P G Sbjct: 679 IAVNVPEWQAENCIQCNQCSFVCPHAAIRPFLVDDKEKAGAPEGFETLPAMGKGFEGLGY 738 Query: 95 RYDIDMIKCIYCGLCQEACP----VDAIVEGPN---------FEFATETRQELYYDKERL 141 R + + C CG C + CP A++ P F++A + KE L Sbjct: 739 RIQVTPLDCTGCGNCADICPGKKGEKALLMKPIETQTSQIRKFDYAHSS----VSYKENL 794 Query: 142 LNNGDRWESEIVRNI 156 + S+ + + Sbjct: 795 MAKNSIKGSQFAQPL 809 >gi|301062305|ref|ZP_07202971.1| 2Fe-2S iron-sulfur cluster binding domain protein [delta proteobacterium NaphS2] gi|300443605|gb|EFK07704.1| 2Fe-2S iron-sulfur cluster binding domain protein [delta proteobacterium NaphS2] Length = 276 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 21/61 (34%), Gaps = 3/61 (4%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C+LC +C DG R + CI CG C CP AI Sbjct: 140 CIRCRLCIRVCKEVVGIGAIKMVERDGLRLIIP---REGLCIGCGTCANICPTGAIHLAD 196 Query: 123 N 123 Sbjct: 197 E 197 >gi|300857175|ref|YP_003782159.1| putative iron-sulfur cluster-binding protein [Clostridium ljungdahlii DSM 13528] gi|300437290|gb|ADK17057.1| predicted iron-sulfur cluster-binding protein [Clostridium ljungdahlii DSM 13528] Length = 464 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 4/71 (5%) Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 C A S R +C +CG C ++CP ++I TR+ Sbjct: 204 CNVAACYKGSNKAAGCPMFEFPRIMDTNAECNFCGNCVKSCPNNSIKISRR----VPTRE 259 Query: 133 ELYYDKERLLN 143 + K +L Sbjct: 260 LWFIRKPKLEE 270 >gi|299538616|ref|ZP_07051899.1| dihydropyrimidine dehydrogenase [Lysinibacillus fusiformis ZC1] gi|298726203|gb|EFI66795.1| dihydropyrimidine dehydrogenase [Lysinibacillus fusiformis ZC1] Length = 420 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 19/63 (30%), Gaps = 5/63 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117 + CI C C C +G C+ C LC CPVD A Sbjct: 338 NNDVCINCNKCHIACE-DTSHQCIDLYTENGRPMLKV---REEDCVGCNLCSIVCPVDGA 393 Query: 118 IVE 120 I Sbjct: 394 ISM 396 >gi|298375682|ref|ZP_06985639.1| ferredoxin 2 [Bacteroides sp. 3_1_19] gi|298268182|gb|EFI09838.1| ferredoxin 2 [Bacteroides sp. 3_1_19] Length = 459 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 11/61 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +RCI C C CP AI I G C+ CG C ++CP +AI Sbjct: 13 DNDRCIGCTHCMKECPTGAIRIRDGKALIHKDW-----------CVDCGECLKSCPTEAI 61 Query: 119 V 119 Sbjct: 62 Y 62 Score = 34.7 bits (78), Expect = 3.9, Method: Composition-based stats. Identities = 10/25 (40%), Positives = 12/25 (48%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 ID +CI C C + CP AI Sbjct: 12 IDNDRCIGCTHCMKECPTGAIRIRD 36 >gi|291244574|ref|XP_002742170.1| PREDICTED: dihydropyrimidine dehydrogenase-like [Saccoglossus kowalevskii] Length = 1025 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 22/78 (28%), Gaps = 14/78 (17%) Query: 59 GEERCIACKLCEAICP---AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP- 114 EE CI C C C QAI + C C LC CP Sbjct: 949 DEEMCINCGKCYMTCNDSGYQAIVFDPETHLPR----------INADCTGCTLCVSVCPI 998 Query: 115 VDAIVEGPNFEFATETRQ 132 +D I P R Sbjct: 999 LDCITMIPRQIPHVINRG 1016 >gi|291287298|ref|YP_003504114.1| Cobyrinic acid ac-diamide synthase [Denitrovibrio acetiphilus DSM 12809] gi|290884458|gb|ADD68158.1| Cobyrinic acid ac-diamide synthase [Denitrovibrio acetiphilus DSM 12809] Length = 283 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 22/69 (31%), Gaps = 11/69 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L E C+ C C C A+ +G C CG C E Sbjct: 57 LPVPELCESLCVNCCSCVEFCQFNALVSLAGKVVAF-----------PELCHSCGGCIEI 105 Query: 113 CPVDAIVEG 121 CP +A+ E Sbjct: 106 CPNNALKET 114 >gi|222530101|ref|YP_002573983.1| hypothetical protein Athe_2135 [Caldicellulosiruptor bescii DSM 6725] gi|222456948|gb|ACM61210.1| protein of unknown function DUF362 [Caldicellulosiruptor bescii DSM 6725] Length = 375 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 27/66 (40%), Gaps = 11/66 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C C CPAQAI + S +D+ KCI C C E CP AI Sbjct: 314 DINICIGCAECFNACPAQAIEMRSRKAY-----------VDLKKCIRCYCCHELCPSKAI 362 Query: 119 VEGPNF 124 +F Sbjct: 363 KIKRSF 368 >gi|167767284|ref|ZP_02439337.1| hypothetical protein CLOSS21_01803 [Clostridium sp. SS2/1] gi|167711259|gb|EDS21838.1| hypothetical protein CLOSS21_01803 [Clostridium sp. SS2/1] Length = 450 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 28/89 (31%), Gaps = 3/89 (3%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 A T + P K F N CI C C ++CP + + Sbjct: 342 MMGMAMFTTDVPAVKT--FSCFLAFTKDEVAANQPSNCIRCGRCVSVCPQK-LMPAKLSV 398 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 D + + +C+ CG C CP Sbjct: 399 LADHNQFDEFEKLYGAECVECGSCSFVCP 427 >gi|150390846|ref|YP_001320895.1| molybdopterin oxidoreductase [Alkaliphilus metalliredigens QYMF] gi|149950708|gb|ABR49236.1| molybdopterin oxidoreductase [Alkaliphilus metalliredigens QYMF] Length = 1187 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 31/93 (33%), Gaps = 12/93 (12%) Query: 39 EKGSTSPRFRGEHALRRYPNGEER-------CIACKLCEAICP----AQAITIESGPRCH 87 E ++ F GE R+ +G CI C LC C A+ + Sbjct: 582 EYEASPKSFTGEIHHRQSDDGHPFIIRDADKCILCGLCVRTCQEVIGVGALGLVDRG-FD 640 Query: 88 DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + + CI CG C CP A+ E Sbjct: 641 TIIMPGLDLPLKETDCISCGQCVTVCPTGALQE 673 >gi|150007737|ref|YP_001302480.1| ferredoxin 2 [Parabacteroides distasonis ATCC 8503] gi|301310227|ref|ZP_07216166.1| ferredoxin 2 [Bacteroides sp. 20_3] gi|149936161|gb|ABR42858.1| ferredoxin 2 [Parabacteroides distasonis ATCC 8503] gi|300831801|gb|EFK62432.1| ferredoxin 2 [Bacteroides sp. 20_3] Length = 459 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 11/61 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +RCI C C CP AI I G C+ CG C ++CP +AI Sbjct: 13 DNDRCIGCTHCMKECPTGAIRIRDGKALIHKDW-----------CVDCGECLKSCPTEAI 61 Query: 119 V 119 Sbjct: 62 Y 62 Score = 34.7 bits (78), Expect = 3.9, Method: Composition-based stats. Identities = 10/25 (40%), Positives = 12/25 (48%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 ID +CI C C + CP AI Sbjct: 12 IDNDRCIGCTHCMKECPTGAIRIRD 36 >gi|134298565|ref|YP_001112061.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfotomaculum reducens MI-1] gi|134051265|gb|ABO49236.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Desulfotomaculum reducens MI-1] Length = 196 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 11/59 (18%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C AC LC + CP QAI + I +C+ CG C + CP AI G Sbjct: 85 CTACGLCVSACPDQAIVLGEEG-----------PCIVESQCLNCGKCAKICPTGAIYTG 132 Score = 37.0 bits (84), Expect = 0.99, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 19/49 (38%) Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 A S P+ D + + C CGLC ACP AIV G Sbjct: 57 AGCPNSCSQPQIKDFGLQGQAVPVVGDGCTACGLCVSACPDQAIVLGEE 105 >gi|167034636|ref|YP_001669867.1| dihydropyrimidine dehydrogenase [Pseudomonas putida GB-1] gi|166861124|gb|ABY99531.1| dihydroorotate dehydrogenase family protein [Pseudomonas putida GB-1] Length = 424 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 4/65 (6%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV- 115 +E CI C C C + + DGT Y++ +C+ C LCQ CPV Sbjct: 339 HIDQEACIGCGRCHIACEDTSHQAIASTLKADGTHA---YNVIEEECVGCNLCQITCPVE 395 Query: 116 DAIVE 120 + I Sbjct: 396 NCIEM 400 >gi|189426181|ref|YP_001953358.1| molybdopterin oxidoreductase [Geobacter lovleyi SZ] gi|189422440|gb|ACD96838.1| molybdopterin oxidoreductase [Geobacter lovleyi SZ] Length = 815 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 22/64 (34%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + RC+ C C IC + + C +CG C CPV A+ Sbjct: 143 DQNRCVLCGKCVRICDEIVARGALTFISRGIETKIGTEFDGPLSCEFCGSCISVCPVGAL 202 Query: 119 VEGP 122 + P Sbjct: 203 LARP 206 >gi|46581201|ref|YP_012009.1| ferredoxin [Desulfovibrio vulgaris str. Hildenborough] gi|120601567|ref|YP_965967.1| ferredoxin [Desulfovibrio vulgaris DP4] gi|46450622|gb|AAS97269.1| iron-sulfur cluster-binding protein [Desulfovibrio vulgaris str. Hildenborough] gi|120561796|gb|ABM27540.1| electron transport complex, RnfABCDGE type, B subunit [Desulfovibrio vulgaris DP4] gi|311234870|gb|ADP87724.1| electron transport complex, RnfABCDGE type, B subunit [Desulfovibrio vulgaris RCH1] Length = 295 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 5/67 (7%) Query: 57 PNGEERCIACKLCEAICPAQAITIES-----GPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 +C C +C CP + + C + ++ + CI CG C + Sbjct: 163 HVDLAKCTGCGVCINACPRNTLELIPVRARVAVMCSTKEKLKAVMEVCEVGCINCGKCVK 222 Query: 112 ACPVDAI 118 ACP AI Sbjct: 223 ACPAHAI 229 Score = 37.8 bits (86), Expect = 0.55, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 11/66 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + C+ C +CP A+ IE+G +D+ KC CG+C ACP + Sbjct: 134 DSCSYSCLGLGDCVEVCPFDALHIENGLTH-----------VDLAKCTGCGVCINACPRN 182 Query: 117 AIVEGP 122 + P Sbjct: 183 TLELIP 188 >gi|73669336|ref|YP_305351.1| hypothetical protein Mbar_A1830 [Methanosarcina barkeri str. Fusaro] gi|72396498|gb|AAZ70771.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro] Length = 310 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 32/85 (37%), Gaps = 17/85 (20%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 ++L E CI C C C +A++ +++D +C C +C Sbjct: 55 YYSLEIARIDPELCIECGKCREFCRYEAVS--------------ENFEVDPYECEGCAVC 100 Query: 110 QEACPVDAIVEGPNF---EFATETR 131 CP A+ F++ETR Sbjct: 101 TIVCPNGAVSMKKKVSGQSFSSETR 125 >gi|150015601|ref|YP_001307855.1| nitroreductase [Clostridium beijerinckii NCIMB 8052] gi|149902066|gb|ABR32899.1| nitroreductase [Clostridium beijerinckii NCIMB 8052] Length = 263 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 10/66 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + +++CI C LC CP + + I +CI CG C Sbjct: 1 MNLITVNQDKCIKCGLCVNECPERVLEPSENGPKE----------ICGEECISCGHCVAI 50 Query: 113 CPVDAI 118 CP +AI Sbjct: 51 CPREAI 56 Score = 35.1 bits (79), Expect = 3.2, Method: Composition-based stats. Identities = 10/27 (37%), Positives = 13/27 (48%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPN 123 ++ KCI CGLC CP + N Sbjct: 5 TVNQDKCIKCGLCVNECPERVLEPSEN 31 >gi|315919787|ref|ZP_07916027.1| 4Fe-4S ferredoxin [Bacteroides sp. D2] gi|313693662|gb|EFS30497.1| 4Fe-4S ferredoxin [Bacteroides sp. D2] Length = 294 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 12/77 (15%) Query: 51 HALRRYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGT--------RRTVRYDI 98 + + +CI C C A CP ++ I + P+ + R Sbjct: 172 ERWKYWMEEMSKCIKCYACRAACPLCYCSRCIVEVNCPQWVQPWSAPLTNMEWQINRVMH 231 Query: 99 DMIKCIYCGLCQEACPV 115 +CI CG C++ACPV Sbjct: 232 MAGRCIGCGACKQACPV 248 >gi|304439744|ref|ZP_07399642.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371731|gb|EFM25339.1| conserved hypothetical protein [Peptoniphilus duerdenii ATCC BAA-1640] Length = 79 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 29/82 (35%), Gaps = 12/82 (14%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 +P T + + CIAC C+ CP I+ + Sbjct: 5 FPSVILKTVKGIKFYGGAIMAHIITDACIACGACQPECPVNCISEGA------------I 52 Query: 96 YDIDMIKCIYCGLCQEACPVDA 117 Y+ID +CI CG C CP A Sbjct: 53 YEIDQDQCIDCGACSSVCPTGA 74 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 14/30 (46%), Positives = 16/30 (53%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 I CI CG CQ CPV+ I EG +E Sbjct: 26 HIITDACIACGACQPECPVNCISEGAIYEI 55 >gi|303256660|ref|ZP_07342674.1| ferredoxin-type protein NapH [Burkholderiales bacterium 1_1_47] gi|302860151|gb|EFL83228.1| ferredoxin-type protein NapH [Burkholderiales bacterium 1_1_47] Length = 294 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 8/73 (10%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G+ L + + C C C +C P+ + + +C CG Sbjct: 219 GKIGLTKVKFDNDTCTRCGDCIKVC--------PEPQVINFKKAAEVGMYASGECTNCGK 270 Query: 109 CQEACPVDAIVEG 121 C CP +++ G Sbjct: 271 CVSICPENSLNFG 283 Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 15/53 (28%), Gaps = 6/53 (11%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 C +CP A G + D C CG C + CP Sbjct: 200 TKRGWCGHLCPLGAFW------ALWGKIGLTKVKFDNDTCTRCGDCIKVCPEP 246 >gi|302343550|ref|YP_003808079.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075] gi|301640163|gb|ADK85485.1| NADH dehydrogenase (quinone) [Desulfarculus baarsii DSM 2075] Length = 352 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 23/67 (34%), Gaps = 3/67 (4%) Query: 59 GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQEACPV 115 +CI C C C Q ++ D + C++CG C + CP Sbjct: 144 DFSKCILCGRCVQACNEVQVNKAIGYGYRGAKSKIVTSGDRPYNQSDCVFCGQCVQVCPT 203 Query: 116 DAIVEGP 122 A+ E Sbjct: 204 GALTEKK 210 >gi|288560647|ref|YP_003424133.1| polyferredoxin [Methanobrevibacter ruminantium M1] gi|288543357|gb|ADC47241.1| polyferredoxin [Methanobrevibacter ruminantium M1] Length = 275 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 3/68 (4%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 H ++RC C C +C AIT+ R D++ C+ C LC+ Sbjct: 176 HGHMYSYIDKDRCCGCGSCANLCIQGAITL---KRDLGPVVIYSHLDVNQDICVACELCE 232 Query: 111 EACPVDAI 118 + CPV AI Sbjct: 233 DNCPVGAI 240 Score = 41.2 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 16/74 (21%) Query: 63 CIACKLCEAICPAQAITIESGP----------------RCHDGTRRTVRYDIDMIKCIYC 106 C+ C++C CP I + G + + I+ CI C Sbjct: 80 CVQCEICAQTCPVSCIYVWDGETVIKEDDSVEYTLKELKVPHRNLKMEDISINREVCIGC 139 Query: 107 GLCQEACPVDAIVE 120 G C + CP +AI Sbjct: 140 GSCLKYCPTNAISL 153 Score = 35.5 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 28/66 (42%), Gaps = 11/66 (16%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 ++ C+AC+LCE CP AI + G ++ KCI C C CP Sbjct: 217 HLDVNQDICVACELCEDNCPVGAIKVVDGEIV-----------LNNDKCIRCKECSSRCP 265 Query: 115 VDAIVE 120 V A+ Sbjct: 266 VGALNL 271 Score = 34.3 bits (77), Expect = 5.1, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 25/88 (28%), Gaps = 12/88 (13%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG------------TRRTVR 95 + E CI C C CP AI++ S + Sbjct: 121 HRNLKMEDISINREVCIGCGSCLKYCPTNAISLRSKEFIEAHGEECPEVGAIDSEHGHMY 180 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPN 123 ID +C CG C C AI + Sbjct: 181 SYIDKDRCCGCGSCANLCIQGAITLKRD 208 >gi|256003828|ref|ZP_05428815.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium thermocellum DSM 2360] gi|255992166|gb|EEU02261.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium thermocellum DSM 2360] Length = 403 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 1/54 (1%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + CI C C CP + + G + ++ CI CG C CP Sbjct: 326 QACIRCGRCVRACPMNLLPLYLNNNSIRGNIEELN-RYHVMDCIECGSCAYVCP 378 Score = 37.8 bits (86), Expect = 0.53, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 25/114 (21%), Gaps = 18/114 (15%) Query: 12 FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71 F+ E++ K + T++ P K C + Sbjct: 233 FISEYIK----TGMPLIKKRVTVDGPSVKRP---GNVEVLIGTPISEVFSFCGGFGIVPK 285 Query: 72 ICPAQ------AITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEACP 114 A P T CI CG C ACP Sbjct: 286 KILMGGPMMGIAQYTLDTPVLKHTNALLAFDETTAVLPKEQACIRCGRCVRACP 339 >gi|255319168|ref|ZP_05360386.1| electron transport complex, rnfaBcdge type, b subunit [Acinetobacter radioresistens SK82] gi|262379300|ref|ZP_06072456.1| NADH:ubiquinone oxidoreductase [Acinetobacter radioresistens SH164] gi|255303814|gb|EET83013.1| electron transport complex, rnfaBcdge type, b subunit [Acinetobacter radioresistens SK82] gi|262298757|gb|EEY86670.1| NADH:ubiquinone oxidoreductase [Acinetobacter radioresistens SH164] Length = 266 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 29/85 (34%), Gaps = 10/85 (11%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E+ + G + E+ CI C C + CP AI + + + Sbjct: 68 EESVWPIQADGRPQRMKAVIREDECIGCTKCISACPVDAIIGSGK----------LMHTV 117 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPN 123 C C LC CPVD I + Sbjct: 118 LTDLCTGCELCIPPCPVDCIDLIED 142 >gi|242399075|ref|YP_002994499.1| phosphoadenosine 5'-phosphosulfate reductase, fused to RNA-binding PUA and 4Fe-4S binding domains [Thermococcus sibiricus MM 739] gi|242265468|gb|ACS90150.1| phosphoadenosine 5'-phosphosulfate reductase, fused to RNA-binding PUA and 4Fe-4S binding domains [Thermococcus sibiricus MM 739] Length = 628 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 9/58 (15%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C +C CP A+ I S R + ++D KCI+C C E CP+ I Sbjct: 571 YECVGCGVCVGRCPENALRINSNTR---------KIEVDWEKCIHCRECVEVCPLLKI 619 >gi|255089569|ref|XP_002506706.1| predicted protein [Micromonas sp. RCC299] gi|226521979|gb|ACO67964.1| predicted protein [Micromonas sp. RCC299] Length = 614 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 3/68 (4%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA---IVEGPN 123 K C+ C ++ G C + + + I CI CG+C + CP +A I N Sbjct: 30 KKCKQECKKSCPVVKVGKLCIEVSGSSKLAYISEDLCIGCGICVKKCPFEAVQIINLPKN 89 Query: 124 FEFATETR 131 E T R Sbjct: 90 LEKETTHR 97 >gi|206901319|ref|YP_002250452.1| iron-sulfur cluster-binding protein [Dictyoglomus thermophilum H-6-12] gi|206740422|gb|ACI19480.1| iron-sulfur cluster-binding protein [Dictyoglomus thermophilum H-6-12] Length = 137 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 9/60 (15%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++C+ C C + CP +A+ + +T+ D KC CG+C E CP A+ Sbjct: 83 DKCVHCGYCVSYCPTKALNRDE---------KTLTVSFDSQKCTACGICVEICPYSAMEM 133 >gi|195355035|ref|XP_002043999.1| GM13670 [Drosophila sechellia] gi|194129244|gb|EDW51287.1| GM13670 [Drosophila sechellia] Length = 922 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 17/64 (26%), Gaps = 8/64 (12%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP-VDAI 118 + CI C C C + C C LC CP +D I Sbjct: 841 PDMCINCGKCYMTCA-------DSGYQAIEFDKDTHIPHVNDDCTGCTLCVSVCPIIDCI 893 Query: 119 VEGP 122 P Sbjct: 894 TMVP 897 >gi|156537914|ref|XP_001608142.1| PREDICTED: similar to ribonuclease L inhibitor homolog [Nasonia vitripennis] Length = 608 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 22/56 (39%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 K C C + G C + T + I CI CG+C + CP +AI Sbjct: 27 KRCRQECKRSCPVVRMGKLCIEVTPNSKIASISEELCIGCGICVKKCPFEAISIIN 82 >gi|281357846|ref|ZP_06244332.1| hydrogenase, Fe-only [Victivallis vadensis ATCC BAA-548] gi|281315793|gb|EFA99820.1| hydrogenase, Fe-only [Victivallis vadensis ATCC BAA-548] Length = 578 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 3/67 (4%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM---IKCIYCGLCQEACPV 115 ++CI C+ CE C A + +C++CG C +ACPV Sbjct: 148 DLDKCIMCRRCETACNAIQTVGVLSGVGRGFNAVVAPAGLKPLAETECVFCGQCVQACPV 207 Query: 116 DAIVEGP 122 A+ E Sbjct: 208 GALSEID 214 >gi|11127703|gb|AAG31038.1|AF262402_1 putative iron hydrogenase HydA [Spironucleus barkhanus] Length = 467 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 23/73 (31%), Gaps = 10/73 (13%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY----------DIDMIKCIYC 106 ++CI C++C C Y + C C Sbjct: 24 QIDYQKCIGCQMCAKTCTDSQNFNIFKISAPKTKPFVNAYGSVAEGTERNALAGTDCTGC 83 Query: 107 GLCQEACPVDAIV 119 G C ACPV+A++ Sbjct: 84 GACVRACPVEALM 96 >gi|71083382|ref|YP_266101.1| formate dehydrogenase subunit alpha (fdhF-2) [Candidatus Pelagibacter ubique HTCC1062] gi|71062495|gb|AAZ21498.1| formate dehydrogenase Alpha subunit (fdhF-2) [Candidatus Pelagibacter ubique HTCC1062] Length = 922 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 26/87 (29%), Gaps = 6/87 (6%) Query: 38 FEKGSTSPRFRGEHA---LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 + +T + +G + CI C C C + + Sbjct: 132 DHRYNTPKQHKGIPRDTSHDYMRMNLDNCINCGRCVRACDEIQGSFVLTMSGRGFESKIT 191 Query: 95 RYDIDM---IKCIYCGLCQEACPVDAI 118 + + C+ CG C CP DAI Sbjct: 192 TDNDALFGDSSCVSCGACAHTCPTDAI 218 >gi|18977342|ref|NP_578699.1| 2-ketoisovalerate ferredoxin oxidoreductase subunit delta [Pyrococcus furiosus DSM 3638] gi|6686104|sp|Q51800|VORD_PYRFU RecName: Full=Ketoisovalerate oxidoreductase subunit vorD; Short=VOR; AltName: Full=2-oxoisovalerate ferredoxin reductase subunit delta; AltName: Full=2-oxoisovalerate oxidoreductase delta chain gi|1197359|emb|CAA59501.1| 2-ketovalerate ferredoxin oxidoreductase delta-2 [Pyrococcus furiosus DSM 3638] gi|18893019|gb|AAL81094.1| 2-ketovalerate ferredoxin oxidoreductase subunit delta-2 [Pyrococcus furiosus DSM 3638] Length = 105 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 25/65 (38%), Gaps = 10/65 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 EE+C+ C +C CP AI I+ ID C CG+C CP AI Sbjct: 49 NEEKCVKCYICWKYCPEPAIYIKPDGYVA----------IDYDYCKGCGICANECPTKAI 98 Query: 119 VEGPN 123 Sbjct: 99 TMIKE 103 >gi|332017503|gb|EGI58223.1| ATP-binding cassette sub-family E member 1 [Acromyrmex echinatior] Length = 602 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 21/56 (37%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 K C C + G C + + I CI CG+C + CP +AI Sbjct: 21 KRCRQECKRSCPVVRMGKLCIEVNPNSKIAAISEELCIGCGICVKKCPFEAISIIN 76 >gi|329766285|ref|ZP_08257832.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Candidatus Nitrosoarchaeum limnia SFB1] gi|329137187|gb|EGG41476.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Candidatus Nitrosoarchaeum limnia SFB1] Length = 316 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 23/67 (34%), Gaps = 5/67 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CIA C CP P ++ + CI+C C+ CP AI Sbjct: 253 DYDICIADGGCIEACPVGVYEWFDTPGNPASEKKPLMSK--EPDCIFCLACEGVCPPQAI 310 Query: 119 VEGPNFE 125 FE Sbjct: 311 ---KIFE 314 >gi|313901186|ref|ZP_07834674.1| 4Fe-4S binding domain protein [Clostridium sp. HGF2] gi|312954144|gb|EFR35824.1| 4Fe-4S binding domain protein [Clostridium sp. HGF2] Length = 501 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 20/64 (31%), Gaps = 9/64 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E RC C++CE C + + D C+ C C CP A+ Sbjct: 15 DETRCTHCRICEQQCANEVHYFDEEK---------SMMKCDDTNCVNCQRCVSLCPTRAL 65 Query: 119 VEGP 122 Sbjct: 66 KIVK 69 >gi|309390310|gb|ADO78190.1| nitroreductase [Halanaerobium praevalens DSM 2228] Length = 273 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 24/107 (22%), Positives = 35/107 (32%), Gaps = 16/107 (14%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 +E+CI C C C + I +E G I C CG C CP Sbjct: 1 MMQIDQEKCIGCAKCITDCLVRDIVMEDGKA-----------RIKNESCFKCGHCIAICP 49 Query: 115 VDAIVEGPNFEF---ATETRQELYYDKERLLNNGDRWESEIVRNIVT 158 DA+ +E ++ E LL N ++ I + Sbjct: 50 ADAVSST-EYEMDEVKEYKAEKFEVPAENLL-NFIKFRRTIRQFKDQ 94 >gi|262381755|ref|ZP_06074893.1| ferredoxin 2 [Bacteroides sp. 2_1_33B] gi|262296932|gb|EEY84862.1| ferredoxin 2 [Bacteroides sp. 2_1_33B] Length = 459 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 11/61 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +RCI C C CP AI I G C+ CG C ++CP +AI Sbjct: 13 DNDRCIGCTHCMKECPTGAIRIRDGKALIHKDW-----------CVDCGECLKSCPTEAI 61 Query: 119 V 119 Sbjct: 62 Y 62 Score = 34.7 bits (78), Expect = 4.0, Method: Composition-based stats. Identities = 10/25 (40%), Positives = 12/25 (48%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 ID +CI C C + CP AI Sbjct: 12 IDNDRCIGCTHCMKECPTGAIRIRD 36 >gi|255013558|ref|ZP_05285684.1| ferredoxin 2 [Bacteroides sp. 2_1_7] Length = 459 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 11/61 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +RCI C C CP AI I G C+ CG C ++CP +AI Sbjct: 13 DNDRCIGCTHCMKECPTGAIRIRDGKALIHKDW-----------CVDCGECLKSCPTEAI 61 Query: 119 V 119 Sbjct: 62 Y 62 Score = 34.7 bits (78), Expect = 4.0, Method: Composition-based stats. Identities = 10/25 (40%), Positives = 12/25 (48%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 ID +CI C C + CP AI Sbjct: 12 IDNDRCIGCTHCMKECPTGAIRIRD 36 >gi|239623526|ref|ZP_04666557.1| anaerobic sulfite reductase subunit C [Clostridiales bacterium 1_7_47_FAA] gi|239521557|gb|EEQ61423.1| anaerobic sulfite reductase subunit C [Clostridiales bacterium 1_7_47FAA] Length = 346 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 29/97 (29%), Gaps = 7/97 (7%) Query: 25 RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84 ++ P + + G + + +RCI C C C A Sbjct: 141 SHYHIKVAVAGCPNDCVKANFNDFGIMGINKQDYDIDRCIGCGSCVEACQHHAT------ 194 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 + + D D C+ CG C CP A G Sbjct: 195 -GVLSLNKNGKIDKDACCCVGCGECSLICPTGAWTRG 230 >gi|254430754|ref|ZP_05044457.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Cyanobium sp. PCC 7001] gi|197625207|gb|EDY37766.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Cyanobium sp. PCC 7001] Length = 1226 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 19/90 (21%), Positives = 26/90 (28%), Gaps = 24/90 (26%) Query: 58 NGEERCIACKLCEAICPAQAI----------------TIESGPRCHDGTRRTVRYDIDMI 101 + C+ C C +CP I + R H + +T + Sbjct: 721 WESDLCVQCGKCVMVCPHGVIRAKVADPAAFDAAPEGFRTAPARDHAFSGQTFTIQVAAE 780 Query: 102 KCIYCGLCQEACPVD--------AIVEGPN 123 C C LC E CP AI P Sbjct: 781 DCTGCSLCVEVCPARDRRQPRRKAINMAPQ 810 >gi|167772909|ref|ZP_02444962.1| hypothetical protein ANACOL_04297 [Anaerotruncus colihominis DSM 17241] gi|167664842|gb|EDS08972.1| hypothetical protein ANACOL_04297 [Anaerotruncus colihominis DSM 17241] Length = 93 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 25/75 (33%), Gaps = 8/75 (10%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G + R CI C +C+ CPA ITI R + C CG+ Sbjct: 23 GSWRIERPQVDASTCIKCGVCQRYCPADVITIHKD--------RPDCVEFMWDYCKGCGI 74 Query: 109 CQEACPVDAIVEGPN 123 C CP I Sbjct: 75 CANECPKGCIQMVSE 89 >gi|219847452|ref|YP_002461885.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Chloroflexus aggregans DSM 9485] gi|219541711|gb|ACL23449.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chloroflexus aggregans DSM 9485] Length = 559 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 22/81 (27%), Positives = 26/81 (32%), Gaps = 12/81 (14%) Query: 49 GEHALRRYPNGEERCIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 G R RC C C ICP A+ + + CI C Sbjct: 44 GTFPNTRRHFQVTRCNHCANPPCVRICPVTAMYQRTDGIVEFDPKV----------CIGC 93 Query: 107 GLCQEACPVDAIVEGPNFEFA 127 C +ACP DAI P A Sbjct: 94 KACMQACPYDAIYIDPETHNA 114 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 35/122 (28%), Gaps = 12/122 (9%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCL-RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 R + V F + + P T+ R + + P Sbjct: 35 RTWVKYVETGTFPNTRRHFQVTRCNHCANPPCVRICP----VTAMYQRTDGIVEFDP--- 87 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI CK C CP AI I+ +K C+ CP AI+ Sbjct: 88 KVCIGCKACMQACPYDAIYIDPETHNAAKCHFCAHRIDQGLK----PACEIVCPEQAIIS 143 Query: 121 GP 122 G Sbjct: 144 GD 145 Score = 42.4 bits (98), Expect = 0.022, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 26/72 (36%), Gaps = 7/72 (9%) Query: 59 GEERCIACKLCEAICPAQA-----ITIESGPRCHDGTRRTVRYDIDMIKCIYCGL--CQE 111 + +CI C C C ++ + GT R + +C +C C Sbjct: 9 DQRKCIGCHACSTACKSENEVPLGVYRTWVKYVETGTFPNTRRHFQVTRCNHCANPPCVR 68 Query: 112 ACPVDAIVEGPN 123 CPV A+ + + Sbjct: 69 ICPVTAMYQRTD 80 >gi|115485837|ref|NP_001068062.1| Os11g0546000 [Oryza sativa Japonica Group] gi|77551423|gb|ABA94220.1| ATP-binding cassette sub-family E member 1, putative, expressed [Oryza sativa Japonica Group] gi|113645284|dbj|BAF28425.1| Os11g0546000 [Oryza sativa Japonica Group] Length = 604 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 24/56 (42%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 K C C +++G C + T + I CI CG+C + CP DAI Sbjct: 19 KKCRQECKKSCPVVKTGKLCIEVTPASKLAFISEELCIGCGICVKKCPFDAIEIIN 74 >gi|189346239|ref|YP_001942768.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chlorobium limicola DSM 245] gi|189340386|gb|ACD89789.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Chlorobium limicola DSM 245] Length = 258 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 29/122 (23%), Positives = 41/122 (33%), Gaps = 20/122 (16%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 + + T P E FR + RCI C+ C A CP + + Sbjct: 122 HCAEPPCTKACPTE-----ATFRRWDGIVSM--DYHRCIGCRFCMAACPYGSRSFNWRDP 174 Query: 86 CHD----GTRRTVRYDIDMIKCIYCG---------LCQEACPVDAIVEGPNFEFATETRQ 132 T R + KC +C C EACP A+V G + +E R+ Sbjct: 175 REGIKLASTGYPTRMQGVVEKCNFCSERLVKGLDPACVEACPEQALVFGDLNDPGSEIRK 234 Query: 133 EL 134 L Sbjct: 235 LL 236 Score = 34.7 bits (78), Expect = 4.2, Method: Composition-based stats. Identities = 14/49 (28%), Positives = 18/49 (36%), Gaps = 5/49 (10%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 C C +A E+ R R +D +CI C C ACP Sbjct: 120 CNHCAEPPCTKACPTEATFR-----RWDGIVSMDYHRCIGCRFCMAACP 163 >gi|325289255|ref|YP_004265436.1| BFD domain protein (2Fe-2S)-binding domain protein [Syntrophobotulus glycolicus DSM 8271] gi|324964656|gb|ADY55435.1| BFD domain protein (2Fe-2S)-binding domain protein [Syntrophobotulus glycolicus DSM 8271] Length = 256 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 23/59 (38%), Positives = 25/59 (42%), Gaps = 8/59 (13%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 I C CE+ CP AITI G T +D KC CGLC CP AI Sbjct: 39 IPCNPCESACPFGAITI--------GEELTALPVLDQSKCRGCGLCVSGCPGLAIFLVD 89 >gi|307352589|ref|YP_003893640.1| aminoglycoside phosphotransferase-like protein [Methanoplanus petrolearius DSM 11571] gi|307155822|gb|ADN35202.1| aminoglycoside phosphotransferase-like protein [Methanoplanus petrolearius DSM 11571] Length = 431 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 26/99 (26%), Positives = 33/99 (33%), Gaps = 21/99 (21%) Query: 29 KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88 + T P+ + G L+R + CI C CE +CP Sbjct: 353 RPFCTFLCPYGLVFSMASRFGRFGLKRTED----CIDCGKCERVCPT------------- 395 Query: 89 GTRRTVRYDIDMIKCIYCGLCQEACPVD-AIVEGPNFEF 126 D +C CG C E CP D AIV G E Sbjct: 396 ---VEAGRDGRKAECYLCGRCIEVCPKDSAIVFGKRSEP 431 Score = 37.0 bits (84), Expect = 0.90, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 7/53 (13%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 + C +CP + + G +R CI CG C+ CP Sbjct: 350 FVYRPFCTFLCPYGLVFSMASRFGRFGLKR-------TEDCIDCGKCERVCPT 395 >gi|300709461|ref|YP_003735275.1| formate dehydrogenase, alpha subunit [Halalkalicoccus jeotgali B3] gi|299123144|gb|ADJ13483.1| formate dehydrogenase, alpha subunit [Halalkalicoccus jeotgali B3] Length = 1088 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 4/68 (5%) Query: 57 PNGEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 +CI C C C + +E ++ +D C+ CG C Sbjct: 197 QIDRNKCILCNRCVEACNDVQVEGVLRVEGSGPDTRIGFQSGAETMDDSTCVSCGHCATV 256 Query: 113 CPVDAIVE 120 CP ++ E Sbjct: 257 CPTGSLTE 264 Score = 35.1 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 20/67 (29%), Gaps = 11/67 (16%) Query: 58 NGEERCIAC---KLCE--------AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 N RC C CE + + + + ID KCI C Sbjct: 147 NHNLRCTTCSQNGRCELQDASIENGVEHPRYGVFDDRDAYEPIDDTSSFIQIDRNKCILC 206 Query: 107 GLCQEAC 113 C EAC Sbjct: 207 NRCVEAC 213 >gi|224369306|ref|YP_002603470.1| FdhB5 [Desulfobacterium autotrophicum HRM2] gi|223692023|gb|ACN15306.1| FdhB5 [Desulfobacterium autotrophicum HRM2] Length = 315 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 29/94 (30%), Gaps = 12/94 (12%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDG-- 89 T+ PF+ + + + + CI C C CP T Sbjct: 175 TLEDPFKDVKAIEQMDDDQRWNHFETLLDGCIRCYACRNACPLCYCPTCFVDESNPQWVG 234 Query: 90 ---------TRRTVRYDIDMIKCIYCGLCQEACP 114 T +R +C CG C+EACP Sbjct: 235 KGQDPSDVRTFHFLRAYHCAGRCTDCGACEEACP 268 >gi|224367324|ref|YP_002601487.1| Fdx4 [Desulfobacterium autotrophicum HRM2] gi|223690040|gb|ACN13323.1| Fdx4 [Desulfobacterium autotrophicum HRM2] Length = 143 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 3/62 (4%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C+AC +C CP AI ++ + + +CI CG C++ CPV AI Sbjct: 76 DRKTCMACTICVEACPTGAICLDDPTSKDPHAYPALA---NEKRCIGCGFCEKECPVGAI 132 Query: 119 VE 120 Sbjct: 133 TM 134 Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 5/70 (7%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESG---PRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + + CI C+ C +CP ++ G R G R +D C+ C +C EA Sbjct: 32 HTIDTDLCIQCRACGTVCPTGSVEDNFGRIIQRVKPGQRLQPMFDRKT--CMACTICVEA 89 Query: 113 CPVDAIVEGP 122 CP AI Sbjct: 90 CPTGAICLDD 99 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 22/61 (36%), Gaps = 10/61 (16%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 E CI C C ICP+ AIT E + ID CI C C CP Sbjct: 1 MSFIINETCIGCGACTKICPSGAITGEKQE----------LHTIDTDLCIQCRACGTVCP 50 Query: 115 V 115 Sbjct: 51 T 51 >gi|160888258|ref|ZP_02069261.1| hypothetical protein BACUNI_00668 [Bacteroides uniformis ATCC 8492] gi|317480137|ref|ZP_07939247.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 4_1_36] gi|156862204|gb|EDO55635.1| hypothetical protein BACUNI_00668 [Bacteroides uniformis ATCC 8492] gi|316903684|gb|EFV25528.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 4_1_36] Length = 498 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 8/80 (10%) Query: 41 GSTSPRFRGEHALRRYPNGEERCI------ACKLCEAICPAQAITIESGPRCHDGTRRTV 94 + + + ++ CI C C CP AI + + + Sbjct: 403 RPITKADKSSVQIGHAVWVKKNCIPLTDGVQCGNCARHCPTGAIQMVPSIPEDKDSPKIP 462 Query: 95 RYDIDMIKCIYCGLCQEACP 114 I++ +CI CG C+ CP Sbjct: 463 V--INVERCIGCGACENLCP 480 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 25/91 (27%), Gaps = 4/91 (4%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + S R C C +CPA AI + Sbjct: 360 CPNQVLRPSADLRKLMQPEMSYERGYCRPECTKCSEVCPAGAIRPITKADKSSVQIGHAV 419 Query: 96 Y----DIDMIKCIYCGLCQEACPVDAIVEGP 122 + I + + CG C CP AI P Sbjct: 420 WVKKNCIPLTDGVQCGNCARHCPTGAIQMVP 450 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 27/72 (37%), Gaps = 13/72 (18%) Query: 47 FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 F ++L R E+C C LC C A I + + ID +C+ C Sbjct: 211 FLSRYSLFRITIDSEKCNQCSLCSRNCKAACINFKE-------------HQIDASRCVVC 257 Query: 107 GLCQEACPVDAI 118 C E C AI Sbjct: 258 MNCIEKCKHGAI 269 Score = 34.3 bits (77), Expect = 5.4, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 3/62 (4%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 N + C AC+LC + CP Q + + R + +C C E CP Sbjct: 344 CNMAQHCTACQLCVSACPNQVLRPSADLRKLMQPEMSYERGYCRPECTK---CSEVCPAG 400 Query: 117 AI 118 AI Sbjct: 401 AI 402 >gi|125534698|gb|EAY81246.1| hypothetical protein OsI_36424 [Oryza sativa Indica Group] Length = 474 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 24/56 (42%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 K C C +++G C + T + I CI CG+C + CP DAI Sbjct: 19 KKCRQECKKSCPVVKTGKLCIEVTPASKLAFISEELCIGCGICVKKCPFDAIEIIN 74 >gi|78189543|ref|YP_379881.1| heterodisulfide reductase, subunit A/hydrogenase, delta subunit, putative [Chlorobium chlorochromatii CaD3] gi|78171742|gb|ABB28838.1| putative adenylylsulfate reductase-associated electron transfer protein QmoB [Chlorobium chlorochromatii CaD3] Length = 750 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 20/63 (31%), Gaps = 10/63 (15%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 E C C+ C CP A ES +C CG+C ACP I Sbjct: 544 FESCTQCRRCTVECPFGAYDEESNGTPLQ----------YPSRCRRCGVCMGACPQRVIS 593 Query: 120 EGP 122 Sbjct: 594 FKD 596 >gi|20089551|ref|NP_615626.1| ferredoxin [Methanosarcina acetivorans C2A] gi|19914464|gb|AAM04106.1| Na+-transporting NADH:ubiquinone oxidoreductase, subunit 6 (predicted alternative beta subunit) [Methanosarcina acetivorans C2A] Length = 264 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 24/58 (41%), Gaps = 11/58 (18%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 CI CK CE CPA AI + +ID KC CG C CP AI Sbjct: 217 CIGCKKCEKECPAGAIRVTE-----------FLAEIDQEKCTACGACVAICPQKAIEL 263 Score = 37.8 bits (86), Expect = 0.55, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 5/68 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEAC 113 + C +C C A CP +T + + + CI C C++ C Sbjct: 168 NKALCTSCGNCIAACPNGVLTFARDSEKVHVLCRSHDKGKDVKAVCEVGCIGCKKCEKEC 227 Query: 114 PVDAIVEG 121 P AI Sbjct: 228 PAGAIRVT 235 >gi|134299190|ref|YP_001112686.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfotomaculum reducens MI-1] gi|134051890|gb|ABO49861.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Desulfotomaculum reducens MI-1] Length = 1481 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 29/88 (32%), Gaps = 22/88 (25%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C C +C + C A ++ + + C CG C ACP A Sbjct: 1412 DTELCKGCGICVSACVYGARVLDERKGIAL---------VREVLCQGCGACVAACPSGA- 1461 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGD 146 + FE K++LL D Sbjct: 1462 TQQKGFE------------KQQLLAMMD 1477 Score = 37.4 bits (85), Expect = 0.69, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 3/63 (4%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 E I A+ ++ P ID+ KC CG C ACPV+ F + Sbjct: 81 EIITGAKIKDVDGEPGNFKVKIHQKARYIDIAKCTGCGDCARACPVE---LPNEFNGNID 137 Query: 130 TRQ 132 TR+ Sbjct: 138 TRK 140 >gi|124265530|ref|YP_001019534.1| formate dehydrogenase subunit alpha [Methylibium petroleiphilum PM1] gi|124258305|gb|ABM93299.1| formate dehydrogenase, alpha subunit [Methylibium petroleiphilum PM1] Length = 955 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 14/64 (21%), Positives = 22/64 (34%), Gaps = 3/64 (4%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR---YDIDMIKCIYCGLCQEACPV 115 + CI C C C + G + + C+ CG C +ACP Sbjct: 157 NLDACIQCTRCLRACRDEQGNDVIGLAFRGAHAQITFDAGATLGESSCVACGECVQACPT 216 Query: 116 DAIV 119 A++ Sbjct: 217 GALM 220 >gi|110347101|ref|YP_665919.1| cytochrome b/b6-like [Mesorhizobium sp. BNC1] gi|110283212|gb|ABG61272.1| cytochrome b/b6-like protein [Chelativorans sp. BNC1] Length = 535 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 6/73 (8%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 P FR A C C C CP +AI + + ++ Sbjct: 297 PWLPPFRRAPA---ATVDLPNCNGCNRCVEDCPYEAIRLVPRTDGEPFPHQA---EVSTD 350 Query: 102 KCIYCGLCQEACP 114 C+ CG+C +CP Sbjct: 351 LCVSCGICMGSCP 363 Score = 35.5 bits (80), Expect = 2.3, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 18/48 (37%) Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 T+ + RR +D+ C C C E CP +AI P Sbjct: 287 VGVSTMLAAMPWLPPFRRAPAATVDLPNCNGCNRCVEDCPYEAIRLVP 334 >gi|312136954|ref|YP_004004291.1| 4fe-4S ferredoxin iron-sulfur binding domain protein [Methanothermus fervidus DSM 2088] gi|311224673|gb|ADP77529.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanothermus fervidus DSM 2088] Length = 412 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 EE+CI C +C CP SG + +R + +D +CI C C E CP I Sbjct: 173 DEEKCIKCGICAQTCPWN-SVYISGKKPQKRSRTIENFTLDKEECIGCNTCVEICPGGFI 231 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 1/65 (1%) Query: 60 EERCIACKLCEAICPAQAIT-IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C C +CP A+ +E + + T + R + C CG C + CP + Sbjct: 321 YTICTTCGACTTVCPTGALKLVEVSKKVNGETVKRNRIQYNPSLCDKCGNCVDVCPYGIL 380 Query: 119 VEGPN 123 + Sbjct: 381 KLTDD 385 Score = 42.4 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C+ C+ C +CP + I IE + + I ++ C+ CGLC CPV+AI Sbjct: 106 FCVLCQQCVNVCPIEVIGIEGVKEPARVEIKIDKP-IYIVDCVGCGLCVPECPVNAITL 163 Score = 42.0 bits (97), Expect = 0.029, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 22/63 (34%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 +E C C C CP +AI + S + V C CG C CP A Sbjct: 279 YNDENCKFCGRCALNCPNEAIRVVSPKGRVFPGLKKVDEKESYTICTTCGACTTVCPTGA 338 Query: 118 IVE 120 + Sbjct: 339 LKL 341 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 10/80 (12%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE- 120 C+ C LC CP AIT+ + +ID KCI CG+C + CP +++ Sbjct: 145 DCVGCGLCVPECPVNAITL---------PKYGESIEIDEEKCIKCGICAQTCPWNSVYIS 195 Query: 121 GPNFEFATETRQELYYDKER 140 G + + T + DKE Sbjct: 196 GKKPQKRSRTIENFTLDKEE 215 Score = 37.4 bits (85), Expect = 0.73, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 25/75 (33%), Gaps = 5/75 (6%) Query: 52 ALRRYPNGEERCIACK---LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 A+ P C C C CP A+ E +G + + KC CG Sbjct: 23 AISVKPEDVIYCDMCGGEPKCVEACPNDALRHED--ITLEGGIKKKKITYSPEKCDKCGE 80 Query: 109 CQEACPVDAIVEGPN 123 C + CP + + Sbjct: 81 CVKVCPPGILKLVND 95 Score = 37.0 bits (84), Expect = 0.98, Method: Composition-based stats. Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 1/59 (1%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C AC LCE +CP AI +E + C +CG C CP +AI Sbjct: 242 PEICPACGLCEKLCPTDAIELE-VKLGPAKPVTEEGIVYNDENCKFCGRCALNCPNEAI 299 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 12/26 (46%), Positives = 13/26 (50%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPN 123 I+ CI CG CQ CP AI P Sbjct: 4 INKEDCIRCGACQGVCPTGAISVKPE 29 >gi|297619557|ref|YP_003707662.1| NIL domain-containing protein [Methanococcus voltae A3] gi|297378534|gb|ADI36689.1| NIL domain protein [Methanococcus voltae A3] Length = 132 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 27/62 (43%), Gaps = 10/62 (16%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E+CI C C CP AI E +V +DI +CI C C + CP AI+ Sbjct: 80 EKCIDCGACIVHCPVGAIKFEED--------FSVAFDI--DECIGCKTCAKICPTKAIIV 129 Query: 121 GP 122 Sbjct: 130 HD 131 Score = 37.4 bits (85), Expect = 0.70, Method: Composition-based stats. Identities = 13/30 (43%), Positives = 15/30 (50%) Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 KCI CG C CPV AI +F A + Sbjct: 79 EEKCIDCGACIVHCPVGAIKFEEDFSVAFD 108 >gi|256840003|ref|ZP_05545512.1| ferredoxin 2 [Parabacteroides sp. D13] gi|256738933|gb|EEU52258.1| ferredoxin 2 [Parabacteroides sp. D13] Length = 459 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 11/61 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +RCI C C CP AI I G C+ CG C ++CP +AI Sbjct: 13 DNDRCIGCTHCMKECPTGAIRIRDGKALIHKDW-----------CVDCGECLKSCPTEAI 61 Query: 119 V 119 Sbjct: 62 Y 62 Score = 34.7 bits (78), Expect = 4.0, Method: Composition-based stats. Identities = 10/25 (40%), Positives = 12/25 (48%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 ID +CI C C + CP AI Sbjct: 12 IDNDRCIGCTHCMKECPTGAIRIRD 36 >gi|261402917|ref|YP_003247141.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus vulcanius M7] gi|261369910|gb|ACX72659.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus vulcanius M7] Length = 82 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 7/68 (10%) Query: 60 EERCIACKLCEAICPAQAITIE-SGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112 E+C C C CP A E G + +R + I+ C CG C EA Sbjct: 10 REKCHGCGNCVIACPVNAKNPETWGGKGPYSDDVVIRVENGAVAIINKDLCGGCGACIEA 69 Query: 113 CPVDAIVE 120 CPV AI Sbjct: 70 CPVGAIEL 77 >gi|187780016|ref|ZP_02996489.1| hypothetical protein CLOSPO_03612 [Clostridium sporogenes ATCC 15579] gi|187773641|gb|EDU37443.1| hypothetical protein CLOSPO_03612 [Clostridium sporogenes ATCC 15579] Length = 425 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 3/69 (4%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 ++RC+ C C +CP +A + ++ C+ CG+C + C + Sbjct: 288 NINKDRCVGCGKCTKVCPMEA---IKLKETSLENHNSKIAELSEDLCLGCGVCVKNCKTN 344 Query: 117 AIVEGPNFE 125 AI E Sbjct: 345 AIKLVRRKE 353 Score = 40.9 bits (94), Expect = 0.063, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 6/64 (9%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 PN C C CEA A+ + +I+ +C+ CG C + CP++ Sbjct: 254 PNFICNCCKC-HCEAFVSAK-----KFGFLVPVNTTSYLPNINKDRCVGCGKCTKVCPME 307 Query: 117 AIVE 120 AI Sbjct: 308 AIKL 311 >gi|169335612|ref|ZP_02862805.1| hypothetical protein ANASTE_02032 [Anaerofustis stercorihominis DSM 17244] gi|169258350|gb|EDS72316.1| hypothetical protein ANASTE_02032 [Anaerofustis stercorihominis DSM 17244] Length = 56 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 25/63 (39%), Gaps = 11/63 (17%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + CI+C C CP AI+ G Y+ID CI CG C ACP Sbjct: 1 MAHVITDECISCGACAGECPVGAISEGDGK-----------YEIDAATCIDCGACAGACP 49 Query: 115 VDA 117 A Sbjct: 50 TGA 52 >gi|168180011|ref|ZP_02614675.1| iron-sulfur cluster-binding protein [Clostridium botulinum NCTC 2916] gi|182668962|gb|EDT80938.1| iron-sulfur cluster-binding protein [Clostridium botulinum NCTC 2916] Length = 425 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 3/69 (4%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 ++RC+ C C +CP +A + ++ C+ CG+C + C + Sbjct: 288 NINKDRCVGCGKCTKVCPMEA---IKLKETSLENHNSKIAELSEDLCLGCGVCVKNCKTN 344 Query: 117 AIVEGPNFE 125 AI E Sbjct: 345 AIKLVRRKE 353 Score = 40.9 bits (94), Expect = 0.063, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 6/64 (9%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 PN C C CEA A+ + +I+ +C+ CG C + CP++ Sbjct: 254 PNFICNCCKC-HCEAFVSAK-----KFGFLVPVNTTSYLPNINKDRCVGCGKCTKVCPME 307 Query: 117 AIVE 120 AI Sbjct: 308 AIKL 311 >gi|167767872|ref|ZP_02439925.1| hypothetical protein CLOSS21_02409 [Clostridium sp. SS2/1] gi|167710611|gb|EDS21190.1| hypothetical protein CLOSS21_02409 [Clostridium sp. SS2/1] Length = 1173 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 19/103 (18%), Positives = 28/103 (27%), Gaps = 20/103 (19%) Query: 31 KTTINYPFEKGSTS-----PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 K + P+ G RG N + CI C C +CP I + Sbjct: 655 KVSDLMPYVDGHMPLGASAFEKRGVAVDVPSWN-PDNCIQCNFCAYVCPHATIRPVAMTE 713 Query: 86 CHDGTR--------------RTVRYDIDMIKCIYCGLCQEACP 114 + ++ C+ CG C CP Sbjct: 714 EEAAAAPAATKTADMTGMPGYKFAMTVTVLDCLGCGSCVNICP 756 >gi|148379320|ref|YP_001253861.1| iron-sulfur cluster-binding protein [Clostridium botulinum A str. ATCC 3502] gi|153931703|ref|YP_001383696.1| iron-sulfur cluster-binding protein [Clostridium botulinum A str. ATCC 19397] gi|153935168|ref|YP_001387244.1| iron-sulfur cluster-binding protein [Clostridium botulinum A str. Hall] gi|153939701|ref|YP_001390706.1| iron-sulfur cluster-binding protein [Clostridium botulinum F str. Langeland] gi|226948623|ref|YP_002803714.1| iron-sulfur cluster-binding protein [Clostridium botulinum A2 str. Kyoto] gi|148288804|emb|CAL82888.1| putative iron-sulfur cluster binding protein [Clostridium botulinum A str. ATCC 3502] gi|152927747|gb|ABS33247.1| iron-sulfur cluster-binding protein [Clostridium botulinum A str. ATCC 19397] gi|152931082|gb|ABS36581.1| iron-sulfur cluster-binding protein [Clostridium botulinum A str. Hall] gi|152935597|gb|ABS41095.1| iron-sulfur cluster-binding protein [Clostridium botulinum F str. Langeland] gi|226843047|gb|ACO85713.1| iron-sulfur cluster-binding protein [Clostridium botulinum A2 str. Kyoto] gi|295318780|gb|ADF99157.1| iron-sulfur cluster-binding protein [Clostridium botulinum F str. 230613] gi|322805661|emb|CBZ03226.1| ferredoxin [Clostridium botulinum H04402 065] Length = 425 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 3/69 (4%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 ++RC+ C C +CP +A + ++ C+ CG+C + C + Sbjct: 288 NINKDRCVGCGKCTKVCPMEA---IKLKETSLENHNSKIAELSEDLCLGCGVCVKNCKTN 344 Query: 117 AIVEGPNFE 125 AI E Sbjct: 345 AIKLVRRKE 353 Score = 40.9 bits (94), Expect = 0.063, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 6/64 (9%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 PN C C CEA A+ + +I+ +C+ CG C + CP++ Sbjct: 254 PNFICNCCKC-HCEAFVSAK-----KFGFLVPVNTTSYLPNINKDRCVGCGKCTKVCPME 307 Query: 117 AIVE 120 AI Sbjct: 308 AIKL 311 >gi|220929867|ref|YP_002506776.1| hydrogenase, Fe-only [Clostridium cellulolyticum H10] gi|220000195|gb|ACL76796.1| hydrogenase, Fe-only [Clostridium cellulolyticum H10] Length = 574 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 3/70 (4%) Query: 59 GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQEACPV 115 +C+ C C ++C Q ++ T Y+ + +CI CG C + CPV Sbjct: 143 DPNKCVLCGRCVSVCSKIQDVSAIDFAFRGANMTVTTAYEEGLASQECINCGQCIKICPV 202 Query: 116 DAIVEGPNFE 125 A+ E + E Sbjct: 203 GALQERDDTE 212 >gi|116750829|ref|YP_847516.1| cobyrinic acid a,c-diamide synthase [Syntrophobacter fumaroxidans MPOB] gi|116699893|gb|ABK19081.1| Cobyrinic acid a,c-diamide synthase [Syntrophobacter fumaroxidans MPOB] Length = 292 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 11/62 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ERC C +C ++C AI Y +D I+C C +C CP +AI Sbjct: 64 DGERCTGCGVCASLCRFDAIREGERG-----------YTVDPIRCEGCKVCVAFCPAEAI 112 Query: 119 VE 120 Sbjct: 113 RF 114 >gi|300087835|ref|YP_003758357.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527568|gb|ADJ26036.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 1008 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 4/66 (6%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E C C C CP AI++ G ++TV D KC CG+C CP I Sbjct: 933 ENCDGCAYCVDPCPYDAISLLEY-NFKGGLKKTVEAD--PAKCHGCGVCMATCPKKGI-M 988 Query: 121 GPNFEF 126 NF Sbjct: 989 VKNFYL 994 >gi|291514608|emb|CBK63818.1| electron transport complex, RnfABCDGE type, B subunit [Alistipes shahii WAL 8301] Length = 299 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 27/86 (31%), Gaps = 11/86 (12%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 +P + + + CI C C +C AIT+E+ Sbjct: 193 KWPKNRAVYVSCVSKDKGAVVMKACKAGCIGCGKCVKVCAFDAITVENNLAY-------- 244 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVE 120 ID KC C C CP AI Sbjct: 245 ---IDPQKCKLCRKCVNECPTGAIRL 267 Score = 37.0 bits (84), Expect = 0.80, Method: Composition-based stats. Identities = 18/76 (23%), Positives = 25/76 (32%), Gaps = 8/76 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHD--------GTRRTVRYDIDMIKCIYCGLCQ 110 ++C AC C CP I + + + V CI CG C Sbjct: 169 DADKCTACGACVKACPKMIIELRKKWPKNRAVYVSCVSKDKGAVVMKACKAGCIGCGKCV 228 Query: 111 EACPVDAIVEGPNFEF 126 + C DAI N + Sbjct: 229 KVCAFDAITVENNLAY 244 Score = 37.0 bits (84), Expect = 0.82, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 9/60 (15%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C A+C AI I ++D KC CG C +ACP I Sbjct: 142 CLGFGDCVAVCAFDAIHINPETGLP---------EVDADKCTACGACVKACPKMIIELRK 192 >gi|291280351|ref|YP_003497186.1| NADH-quinone oxidoreductase subunit G [Deferribacter desulfuricans SSM1] gi|290755053|dbj|BAI81430.1| NADH-quinone oxidoreductase, G subunit [Deferribacter desulfuricans SSM1] Length = 763 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 18/82 (21%), Positives = 25/82 (30%), Gaps = 3/82 (3%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 EK + +P + R + RC+ C C IC Sbjct: 124 DEKPNNNPVDHTNPFIERDID---RCVLCGKCVRICDEIVNVEAISFINRGVETYIGTAF 180 Query: 98 IDMIKCIYCGLCQEACPVDAIV 119 C YCG C CPV ++ Sbjct: 181 DQPWNCEYCGQCMSVCPVGSLN 202 >gi|259417001|ref|ZP_05740921.1| dihydroorotate dehydrogenase family protein [Silicibacter sp. TrichCH4B] gi|259348440|gb|EEW60217.1| dihydroorotate dehydrogenase family protein [Silicibacter sp. TrichCH4B] Length = 434 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 8/76 (10%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + + ++ CI C C A C E + + +C+ Sbjct: 330 QYLDLNYVTKAKISQDDCIKCGRCFAAC-------EDTSHQAIAMSADRTFTVKDDECVA 382 Query: 106 CGLCQEACPVD-AIVE 120 C LC CPV+ I Sbjct: 383 CNLCVNVCPVEGCITM 398 >gi|269121726|ref|YP_003309903.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sebaldella termitidis ATCC 33386] gi|268615604|gb|ACZ09972.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sebaldella termitidis ATCC 33386] Length = 261 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 26/80 (32%), Gaps = 12/80 (15%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 P + P E C C C CP AI+ E+ KCI Sbjct: 172 PYKERSAGIVAAPETGEACYDCMKCAKECPVSAISFENPRIAD------------ANKCI 219 Query: 105 YCGLCQEACPVDAIVEGPNF 124 +C C +ACPV A Sbjct: 220 HCCACVKACPVKAKYFDNEM 239 >gi|237748005|ref|ZP_04578485.1| oxidoreductase iron-sulfur protein [Oxalobacter formigenes OXCC13] gi|229379367|gb|EEO29458.1| oxidoreductase iron-sulfur protein [Oxalobacter formigenes OXCC13] Length = 415 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 7/68 (10%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + + +CI C C C G + D T I+ +C+ C LC Sbjct: 333 MVIPGIDQTKCIGCGRCYVSCFDG------GHQAIDWDEYTRTPTIN-NRCVGCHLCLNV 385 Query: 113 CPVDAIVE 120 CPV+ + Sbjct: 386 CPVENCIL 393 >gi|296127181|ref|YP_003634433.1| hydrogenase, Fe-only [Brachyspira murdochii DSM 12563] gi|296018997|gb|ADG72234.1| hydrogenase, Fe-only [Brachyspira murdochii DSM 12563] Length = 582 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 22/67 (32%), Gaps = 2/67 (2%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPVD 116 E+CI C C +C G + + C+ CG C CPV Sbjct: 143 NPEKCIKCGRCVVVCQEMQRVHALGFVNRGFDTYFAPSAVSLKDSPCVDCGQCAAHCPVA 202 Query: 117 AIVEGPN 123 AI E Sbjct: 203 AIYEKDQ 209 >gi|254445715|ref|ZP_05059191.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Verrucomicrobiae bacterium DG1235] gi|198260023|gb|EDY84331.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Verrucomicrobiae bacterium DG1235] Length = 1195 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 17/73 (23%), Positives = 20/73 (27%), Gaps = 16/73 (21%) Query: 58 NGEERCIACKLCEAICPAQAI----TIESGPRCHDGTRRTVRY------------DIDMI 101 E C C C CP AI ES ++ Y + Sbjct: 698 WDAETCTQCNKCSLFCPHAAIRPKIYCESELENAPQGFKSTAYNGPGAEDKAFTIQVYPQ 757 Query: 102 KCIYCGLCQEACP 114 C C C E CP Sbjct: 758 DCTGCNACVELCP 770 >gi|170760857|ref|YP_001787172.1| [Fe] hydrogenase [Clostridium botulinum A3 str. Loch Maree] gi|169407846|gb|ACA56257.1| iron hydrogenase 1 [Clostridium botulinum A3 str. Loch Maree] Length = 577 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 22/68 (32%), Gaps = 3/68 (4%) Query: 59 GEERCIACKLCEAICPAQAITIE---SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 ++CI C+ C IC G I C +CG C CP Sbjct: 149 DMDKCILCRRCITICNEVQTVGTLSAIGRGFETVVAPAFSEAIKNTNCTFCGQCVSVCPT 208 Query: 116 DAIVEGPN 123 A+ E N Sbjct: 209 GALTEVNN 216 >gi|167761979|ref|ZP_02434106.1| hypothetical protein BACSTE_00324 [Bacteroides stercoris ATCC 43183] gi|167700211|gb|EDS16790.1| hypothetical protein BACSTE_00324 [Bacteroides stercoris ATCC 43183] Length = 277 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 21/76 (27%), Gaps = 12/76 (15%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G R E C C C CPA AI KCI C Sbjct: 196 GVPMPRIPAVDTELCNHCGYCVKHCPAGAIVKGDECSTDV------------EKCIRCCA 243 Query: 109 CQEACPVDAIVEGPNF 124 C + CP A F Sbjct: 244 CVKGCPQKARTFDTPF 259 >gi|166030704|ref|ZP_02233533.1| hypothetical protein DORFOR_00378 [Dorea formicigenerans ATCC 27755] gi|166029496|gb|EDR48253.1| hypothetical protein DORFOR_00378 [Dorea formicigenerans ATCC 27755] Length = 56 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 11/66 (16%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + CI+C CEA CP AI+ G Y+I+ CI CG C CP Sbjct: 1 MAHVIGDDCISCGSCEAECPVSAISEGDGK-----------YEINADACIDCGACAAQCP 49 Query: 115 VDAIVE 120 V AI E Sbjct: 50 VGAISE 55 >gi|218782885|ref|YP_002434203.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfatibacillum alkenivorans AK-01] gi|218764269|gb|ACL06735.1| Heterodisulfide reductase, subunit A-like protein [Desulfatibacillum alkenivorans AK-01] Length = 933 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 6/61 (9%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 C C +C ++CP A + + I+ + C CGLC +C AI Sbjct: 864 PANCSECGVCVSLCPYSAPSFTTEGPFAGKA------SINPVLCKGCGLCVASCRSGAIH 917 Query: 120 E 120 Sbjct: 918 L 918 Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 12/77 (15%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIE-------SGPRCHDGTRRTVRYDIDMIKCIY- 105 + ++ C+ C C CP + ++Y ID CI Sbjct: 24 QPRYVDQDLCVGCGACAEKCPKKIPDDYNTGLSKRKAIYVEYAQAVPLKYAIDARYCIKL 83 Query: 106 ----CGLCQEACPVDAI 118 CG C++ CP AI Sbjct: 84 QKDKCGNCEKVCPAGAI 100 >gi|150399747|ref|YP_001323514.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanococcus vannielii SB] gi|150012450|gb|ABR54902.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus vannielii SB] Length = 658 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 21/87 (24%), Positives = 28/87 (32%), Gaps = 7/87 (8%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAIT-------IESGPRCHDGTRRTVRYDI 98 F + E+ C C C + CP + + Y I Sbjct: 229 NFEVTIEKKPRSVDEKTCTGCGACASACPIEVPNEFDLGLGTRKAIYVPFPQAVPLLYTI 288 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFE 125 D CI CGLC + C DA+ G E Sbjct: 289 DKEHCIDCGLCAKVCCADAVRYGQKPE 315 Score = 41.6 bits (96), Expect = 0.035, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 25/70 (35%), Gaps = 7/70 (10%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + R EE C CK+C +CP AIT E V C CG C Sbjct: 572 IEMIRATVNEEVCGGCKVCALMCPYNAITYEEKEGHLVAISDDVA-------CKGCGSCA 624 Query: 111 EACPVDAIVE 120 CP A+ Sbjct: 625 AVCPSGAMQL 634 >gi|330506903|ref|YP_004383331.1| iron sulfur cluster/nucleotide binding domain-containing protein [Methanosaeta concilii GP-6] gi|328927711|gb|AEB67513.1| iron sulfur cluster/nucleotide binding domain protein [Methanosaeta concilii GP-6] Length = 287 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 22/63 (34%), Gaps = 11/63 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 EE C C C +C A+ + G I C CG C CP AI Sbjct: 68 DEELCTHCGKCSEVCAYHALAVLPGTVL-----------IFPELCHGCGACSIICPEKAI 116 Query: 119 VEG 121 EG Sbjct: 117 SEG 119 >gi|326494394|dbj|BAJ90466.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326504534|dbj|BAJ91099.1| predicted protein [Hordeum vulgare subsp. vulgare] gi|326506398|dbj|BAJ86517.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 604 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 23/56 (41%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 K C C +++G C + + I CI CG+C + CP DAI Sbjct: 19 KKCRQECKKSCPVVKTGKLCIEVSPAAKLAFISEELCIGCGICVKKCPFDAIEIIN 74 >gi|317480172|ref|ZP_07939282.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 4_1_36] gi|316903719|gb|EFV25563.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 4_1_36] Length = 373 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 10/55 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 E CI C +C C A+ + + + ID KC+ CG C C Sbjct: 192 DEASCIGCNICVKHCAHDAVHLNASRKAE----------IDYAKCVGCGQCVALC 236 >gi|303238681|ref|ZP_07325214.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein [Acetivibrio cellulolyticus CD2] gi|302593800|gb|EFL63515.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein [Acetivibrio cellulolyticus CD2] Length = 405 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 6/63 (9%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + C C C IC QAI++ + I+ CI CG C+ Sbjct: 1 MEKIMLFKDKTDCCGCGACMNICAKQAISMREDEYG------FLYPVINETLCIRCGACK 54 Query: 111 EAC 113 + C Sbjct: 55 KVC 57 >gi|322436009|ref|YP_004218221.1| NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding protein [Acidobacterium sp. MP5ACTX9] gi|321163736|gb|ADW69441.1| NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding protein [Acidobacterium sp. MP5ACTX9] Length = 797 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 19/88 (21%), Positives = 27/88 (30%), Gaps = 10/88 (11%) Query: 44 SPRFRGEHALRRYPN-GEERCIACKLCEAICPAQAITIESGPR---------CHDGTRRT 93 R E RCI C C +C G + + Sbjct: 128 PKNHREEQKWSPVVYFDRPRCILCYRCVRMCGEGMDVFALGIQNRGSSSIIAPNSPASEN 187 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEG 121 + + C CG+C +ACPV A+ G Sbjct: 188 PMDSLPHVDCEQCGMCIDACPVGALTSG 215 >gi|225175583|ref|ZP_03729577.1| Electron transfer flavoprotein alpha/beta-subunit [Dethiobacter alkaliphilus AHT 1] gi|225168912|gb|EEG77712.1| Electron transfer flavoprotein alpha/beta-subunit [Dethiobacter alkaliphilus AHT 1] Length = 400 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 11/58 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI C+ C CP + KC CG C +ACP DAI Sbjct: 8 DECIGCEACIDACPFPGAVEMKDDVA-----------VLTDKCTGCGACADACPSDAI 54 Score = 35.5 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 9/27 (33%), Positives = 14/27 (51%), Gaps = 1/27 (3%) Query: 98 IDMIKCIYCGLCQEACPVD-AIVEGPN 123 I + +CI C C +ACP A+ + Sbjct: 5 IIVDECIGCEACIDACPFPGAVEMKDD 31 >gi|225017719|ref|ZP_03706911.1| hypothetical protein CLOSTMETH_01648 [Clostridium methylpentosum DSM 5476] gi|224949512|gb|EEG30721.1| hypothetical protein CLOSTMETH_01648 [Clostridium methylpentosum DSM 5476] Length = 436 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 29/105 (27%), Gaps = 6/105 (5%) Query: 15 EFVGAFFLCLRYFF--KAKTTINYPFEKGSTSPRFRGEHALRRY---PNGEERCIACKLC 69 +F G F + + AL CI C C Sbjct: 313 DFCGGFKKTPKKILCGGPMMGVALLDTSTPVIKNNNAILALSSDVLLDQPTTACIRCGKC 372 Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 CP + S + +D + + + CI CG C CP Sbjct: 373 IGACPVH-LMPVSIEKAYDAQDVEMLQKLSVNLCINCGCCSYVCP 416 Score = 35.1 bits (79), Expect = 3.0, Method: Composition-based stats. Identities = 10/20 (50%), Positives = 10/20 (50%) Query: 97 DIDMIKCIYCGLCQEACPVD 116 D CI CG C ACPV Sbjct: 360 DQPTTACIRCGKCIGACPVH 379 >gi|119899774|ref|YP_934987.1| iron-sulfur cluster-binding protein [Azoarcus sp. BH72] gi|119672187|emb|CAL96101.1| conserved hypothetical iron-sulfur cluster-binding protein [Azoarcus sp. BH72] Length = 701 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 9/60 (15%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C C CPA A+ + R D C+ CGLC +CP A+ P Sbjct: 569 CTLCMACTGACPAGALRAAGD---------SYRLDFIEKNCLQCGLCVSSCPETALSLQP 619 Score = 35.5 bits (80), Expect = 2.5, Method: Composition-based stats. Identities = 11/49 (22%), Positives = 16/49 (32%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + +G ID+ C+ C C +ACP AI Sbjct: 170 AYPVWSGQARSLTGHLGAFELAWEQHNPIDLDLCVRCHACVKACPEGAI 218 Score = 35.1 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 13/53 (24%), Positives = 18/53 (33%), Gaps = 11/53 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C +C +AI + +D C CG C CP A+ Sbjct: 326 CNNCIEVCSTEAIRADGN-----------VITVDPYLCKGCGTCSTVCPSGAL 367 >gi|77919712|ref|YP_357527.1| indolepyruvate oxidoreductase subunit alpha [Pelobacter carbinolicus DSM 2380] gi|77545795|gb|ABA89357.1| indolepyruvate oxidoreductase, alpha subunit [Pelobacter carbinolicus DSM 2380] Length = 613 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 9/62 (14%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C+ C A+ + + R ID C+ CG+C+ CP AI Sbjct: 559 ECNGCRYCIKAFECPALVYDE---------PSGRVCIDNDLCVGCGVCERVCPRGAIHNQ 609 Query: 122 PN 123 Sbjct: 610 GE 611 >gi|119992|sp|P00197|FER_CLOSM RecName: Full=Ferredoxin gi|65699|pir||FECLCE ferredoxin 2[4Fe-4S] - Clostridium sp Length = 55 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 27/59 (45%), Positives = 29/59 (49%), Gaps = 11/59 (18%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 CI C CE CP +AI+ R ID KCI CG C CPVDAIVEG Sbjct: 8 CINCGACEPECPVEAISESDAVRV-----------IDADKCIDCGACANTCPVDAIVEG 55 >gi|330999297|ref|ZP_08323014.1| putative ferredoxin-type protein NapH [Parasutterella excrementihominis YIT 11859] gi|329575155|gb|EGG56706.1| putative ferredoxin-type protein NapH [Parasutterella excrementihominis YIT 11859] Length = 295 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 8/73 (10%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G+ L + + C C C +C P+ + + +C CG Sbjct: 220 GKIGLTKVKFDNDTCTRCGDCIKVC--------PEPQVINFKKAAEVGMYASGECTNCGK 271 Query: 109 CQEACPVDAIVEG 121 C CP +++ G Sbjct: 272 CVSICPENSLNFG 284 Score = 36.6 bits (83), Expect = 1.1, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 15/53 (28%), Gaps = 6/53 (11%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 C +CP A G + D C CG C + CP Sbjct: 201 TKRGWCGHLCPLGAFW------ALWGKIGLTKVKFDNDTCTRCGDCIKVCPEP 247 >gi|328948664|ref|YP_004366001.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Treponema succinifaciens DSM 2489] gi|328448988|gb|AEB14704.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Treponema succinifaciens DSM 2489] Length = 56 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 11/60 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 CI C CE CP++AI+ + R I+ C+ CG C CPV AI E Sbjct: 7 SDCINCGACEGECPSEAISEVNDKR-----------QINADNCVSCGSCASVCPVGAISE 55 >gi|312792686|ref|YP_004025609.1| hypothetical protein Calkr_0447 [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179826|gb|ADQ39996.1| protein of unknown function DUF362 [Caldicellulosiruptor kristjanssonii 177R1B] Length = 375 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 11/62 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C C CPAQAI ++S +D+ KCI C C E CP AI Sbjct: 314 DRNICIGCAECFNACPAQAIEMKSRKAY-----------VDLKKCIRCYCCHELCPAKAI 362 Query: 119 VE 120 Sbjct: 363 KI 364 >gi|297618262|ref|YP_003703421.1| electron transfer flavoprotein alpha/beta-subunit [Syntrophothermus lipocalidus DSM 12680] gi|297146099|gb|ADI02856.1| Electron transfer flavoprotein alpha/beta-subunit [Syntrophothermus lipocalidus DSM 12680] Length = 394 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 23/67 (34%), Gaps = 12/67 (17%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 E CI C +C CP +IT+ + C CG C CP Sbjct: 1 MITIDETLCIGCGICVETCPFGSITLVNNVPVV------------SDTCTLCGSCAHDCP 48 Query: 115 VDAIVEG 121 V AIV Sbjct: 49 VGAIVIT 55 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 12/29 (41%), Positives = 14/29 (48%) Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 ID CI CG+C E CP +I N Sbjct: 1 MITIDETLCIGCGICVETCPFGSITLVNN 29 >gi|283782252|ref|YP_003373007.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Pirellula staleyi DSM 6068] gi|283440705|gb|ADB19147.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Pirellula staleyi DSM 6068] Length = 397 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 30/114 (26%), Gaps = 15/114 (13%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC-IYCGLCQEA 112 RC C C C ++ R C C C Sbjct: 250 WYPVIDYSRCTNCMECIDFCLFGVYGVD---------RVDTILVEQPDNCRKGCPACSRV 300 Query: 113 CPVDAI----VEGPNFEFATETRQELYYDKERLLNNGDRWE-SEIVRNIVTDSP 161 CP +AI + PN A L D +L D E +E V D Sbjct: 301 CPENAIIFPQHKTPNIAGAPVIVGSLKIDLSKLFGAPDTGETAEEVAIRERDEQ 354 >gi|302384120|ref|YP_003819943.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Brevundimonas subvibrioides ATCC 15264] gi|302194748|gb|ADL02320.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Brevundimonas subvibrioides ATCC 15264] Length = 133 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 28/88 (31%), Gaps = 13/88 (14%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 G F+ L + C+ C C +CP I Sbjct: 7 GPFVHPFKTPIFLPMTYIVTDACVKCKFMDCIEVCPVDCFYEGEN-----------FLAI 55 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEF 126 +CI CG+C+ CPVDAI E Sbjct: 56 APDECIDCGVCEPECPVDAIKPDTEDEP 83 >gi|257462466|ref|ZP_05626878.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium sp. D12] gi|317060123|ref|ZP_07924608.1| nitrogen fixation iron-sulfur protein RNFC [Fusobacterium sp. D12] gi|313685799|gb|EFS22634.1| nitrogen fixation iron-sulfur protein RNFC [Fusobacterium sp. D12] Length = 436 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 31/92 (33%), Gaps = 9/92 (9%) Query: 39 EKGSTSPRFRGEHALRRYPNGEER---CIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 E+ G AL + + CI C C + CP + R + Sbjct: 338 EEAPVIKGTSGLLALTKEETNPYKPKACIGCGKCVSACPMS-LEPVMFARLAAFQQWEGL 396 Query: 96 YDIDMIKCIYCGLCQEACP-----VDAIVEGP 122 + ++ CI CG C CP +AI G Sbjct: 397 QNYHLMDCIECGSCAFICPANRPLTEAIKIGK 428 >gi|289579324|ref|YP_003477951.1| PAS/PAC sensor protein [Thermoanaerobacter italicus Ab9] gi|289529037|gb|ADD03389.1| putative PAS/PAC sensor protein [Thermoanaerobacter italicus Ab9] Length = 576 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 24/67 (35%), Gaps = 11/67 (16%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 L + C C C CP +AI + G ++ CIYCG C Sbjct: 1 MILDVISVSKANCKNCYRCVRHCPVKAIKVVGGQA-----------EVVDSLCIYCGRCV 49 Query: 111 EACPVDA 117 CP +A Sbjct: 50 IECPQNA 56 >gi|227828353|ref|YP_002830133.1| hypothetical protein M1425_2095 [Sulfolobus islandicus M.14.25] gi|227460149|gb|ACP38835.1| conserved hypothetical protein [Sulfolobus islandicus M.14.25] Length = 619 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 1/58 (1%) Query: 60 EERCIACKLCEAICPAQAITIESGPRC-HDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 CI C C ++CP T + + + D+ C CGLC++ CPV Sbjct: 284 FNGCILCGKCVSVCPYGEQTNDIFHTPLGFYSISYFEKENDLANCHMCGLCEQVCPVR 341 Score = 35.1 bits (79), Expect = 3.0, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 9/46 (19%) Query: 103 CIYCGLCQEACP----VDAIVEGPNFEFATETRQELYYDKERLLNN 144 CI CG C CP + I P + Y++KE L N Sbjct: 287 CILCGKCVSVCPYGEQTNDIFHTP---LGFYSIS--YFEKENDLAN 327 >gi|227831110|ref|YP_002832890.1| hypothetical protein LS215_2260 [Sulfolobus islandicus L.S.2.15] gi|229579995|ref|YP_002838395.1| hypothetical protein YG5714_2224 [Sulfolobus islandicus Y.G.57.14] gi|284998609|ref|YP_003420377.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Sulfolobus islandicus L.D.8.5] gi|227457558|gb|ACP36245.1| conserved hypothetical protein [Sulfolobus islandicus L.S.2.15] gi|228010711|gb|ACP46473.1| conserved hypothetical protein [Sulfolobus islandicus Y.G.57.14] gi|284446505|gb|ADB88007.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Sulfolobus islandicus L.D.8.5] Length = 619 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 1/58 (1%) Query: 60 EERCIACKLCEAICPAQAITIESGPRC-HDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 CI C C ++CP T + + + D+ C CGLC++ CPV Sbjct: 284 FNGCILCGKCVSVCPYGEQTNDVFHTPLGFYSISYFEKENDLANCHMCGLCEQVCPVR 341 >gi|220904626|ref|YP_002479938.1| glycyl-radical enzyme activating protein family [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868925|gb|ACL49260.1| glycyl-radical enzyme activating protein family [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 310 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 8/58 (13%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C+ C C +CP ++ + CH R CI CG C ACP A+ Sbjct: 55 DICVHCGACVPVCPVGIHSMTNAGSCHVVDR--------SKDCINCGKCVHACPEAAL 104 Score = 33.9 bits (76), Expect = 7.9, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 16/50 (32%), Gaps = 4/50 (8%) Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CP + + + DI C++CG C CPV Sbjct: 31 CPLRCQWCSNPESQTRRFEVLFKKDI----CVHCGACVPVCPVGIHSMTN 76 >gi|192288570|ref|YP_001989175.1| hydrogenase, Fe-only [Rhodopseudomonas palustris TIE-1] gi|192282319|gb|ACE98699.1| hydrogenase, Fe-only [Rhodopseudomonas palustris TIE-1] Length = 619 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 36/118 (30%), Gaps = 14/118 (11%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 L++ L FF + T + P + S S RC+ C+ C AI Sbjct: 131 LQDLAQFVGLQQNRFFDRERTESRPVDHSSPS-----------MVRDMRRCVRCQRCVAI 179 Query: 73 CPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 C R D C+ CG C CP A+ E + A Sbjct: 180 CRYHQKIDALAIEGSGLERMVALRDADGYPNSVCVSCGQCVLVCPTGALGERDETDRA 237 >gi|153811524|ref|ZP_01964192.1| hypothetical protein RUMOBE_01916 [Ruminococcus obeum ATCC 29174] gi|149832265|gb|EDM87350.1| hypothetical protein RUMOBE_01916 [Ruminococcus obeum ATCC 29174] Length = 204 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 28/58 (48%), Gaps = 11/58 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI CKLC ++CP + I I S P I+ C++CG C E CP I Sbjct: 152 KECIGCKLCCSVCPQKCIDISSVPV-----------TINQNHCLHCGRCAEICPKQCI 198 >gi|148244257|ref|YP_001218951.1| adenylylsulfate reductase beta subunit [Candidatus Vesicomyosocius okutanii HA] gi|146326084|dbj|BAF61227.1| adenylylsulfate reductase beta subunit [Candidatus Vesicomyosocius okutanii HA] Length = 159 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 8/68 (11%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 RC C C ICP+ + I+ + Y+I+ C C C +ACP AI Sbjct: 7 MTRCDGCGHCVDICPSDIMHIDD--------KYRRAYNIEPNMCWECYSCVKACPHQAID 58 Query: 120 EGPNFEFA 127 +FA Sbjct: 59 VRGYADFA 66 >gi|156742145|ref|YP_001432274.1| cyclic nucleotide-binding protein [Roseiflexus castenholzii DSM 13941] gi|156233473|gb|ABU58256.1| cyclic nucleotide-binding protein [Roseiflexus castenholzii DSM 13941] Length = 565 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 23/121 (19%), Positives = 32/121 (26%), Gaps = 10/121 (8%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 R + V + F + P + A + Sbjct: 35 RTWVKYVETGTFPDTRRHFQVT------RCNHCANPPCVRICPVTAMYQRADGIVEFDPK 88 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 CI CK C CP AI I+ R +K C+ CP AI+ G Sbjct: 89 ACIGCKACLQACPYDAIYIDPETRSAAKCHFCSHRIELGLK----PACEVVCPEQAIISG 144 Query: 122 P 122 Sbjct: 145 D 145 Score = 42.0 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 7/68 (10%) Query: 59 GEERCIACKLCEAICPAQA-----ITIESGPRCHDGTRRTVRYDIDMIKCIYCGL--CQE 111 +CI C C C ++ + GT R + +C +C C Sbjct: 9 DHRKCIGCHACSTACKSENEVPLGVYRTWVKYVETGTFPDTRRHFQVTRCNHCANPPCVR 68 Query: 112 ACPVDAIV 119 CPV A+ Sbjct: 69 ICPVTAMY 76 Score = 42.0 bits (97), Expect = 0.028, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 19/60 (31%), Gaps = 5/60 (8%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 C C + P R + D CI C C +ACP DAI P Sbjct: 56 TRCNHCA-----NPPCVRICPVTAMYQRADGIVEFDPKACIGCKACLQACPYDAIYIDPE 110 >gi|84388509|ref|ZP_00991056.1| anaerobic dehydrogenase [Vibrio splendidus 12B01] gi|84377058|gb|EAP93929.1| anaerobic dehydrogenase [Vibrio splendidus 12B01] Length = 1409 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 24/71 (33%), Gaps = 11/71 (15%) Query: 59 GEERCIACKLCEAICPAQ--------AITIESGPRCHDGTRRTVRYD---IDMIKCIYCG 107 RCI+C C C Q + P R D + C+ CG Sbjct: 637 DANRCISCGQCIQACREQNVHGVLSFMNQSDGKPASRPECRPNFGADKTLMGDSNCVQCG 696 Query: 108 LCQEACPVDAI 118 C +ACP A+ Sbjct: 697 SCIQACPTGAM 707 Score = 35.5 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 17/72 (23%), Positives = 23/72 (31%), Gaps = 8/72 (11%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P + P F + L N C+ C C CP A+ + D Sbjct: 670 PASRPECRPNFGADKTLMGDSN----CVQCGSCIQACPTGAMVDARDRKQGDTDLLKKVD 725 Query: 97 DIDMIKCIYCGL 108 I C YCG+ Sbjct: 726 TI----CTYCGV 733 >gi|115525856|ref|YP_782767.1| hydrogenases, Fe-only [Rhodopseudomonas palustris BisA53] gi|115519803|gb|ABJ07787.1| hydrogenases, Fe-only [Rhodopseudomonas palustris BisA53] Length = 619 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 23/72 (31%), Gaps = 3/72 (4%) Query: 59 GEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 RC+ C+ C AIC G D C+ CG C CP Sbjct: 166 DMRRCVRCQRCVAICRYHQKIDALAIEGSGLDRVVALRDAKDYPSSVCVSCGQCVLVCPT 225 Query: 116 DAIVEGPNFEFA 127 A+ E + A Sbjct: 226 GALGERDETDRA 237 >gi|331269709|ref|YP_004396201.1| hydrogenase [Clostridium botulinum BKT015925] gi|329126259|gb|AEB76204.1| hydrogenase [Clostridium botulinum BKT015925] Length = 582 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 3/65 (4%) Query: 59 GEERCIACKLCEAICPAQAITIE---SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 +CI C C C ++ +T + + +D C+ CG C ACPV Sbjct: 149 NRHKCIKCGRCVTTCKSKTLTSSILLNHKNNRFILQTQNHKCLDESNCLLCGQCVSACPV 208 Query: 116 DAIVE 120 DA+ E Sbjct: 209 DALSE 213 >gi|323698993|ref|ZP_08110905.1| glycyl-radical enzyme activating protein family [Desulfovibrio sp. ND132] gi|323458925|gb|EGB14790.1| glycyl-radical enzyme activating protein family [Desulfovibrio desulfuricans ND132] Length = 298 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 21/59 (35%), Gaps = 10/59 (16%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C CE CP A+T R ++ D +C CG C CP A Sbjct: 55 CTGCGACETACPNGAVTRL----------RNGKFGRDPEQCTDCGACASVCPSGARDMS 103 >gi|317490286|ref|ZP_07948772.1| 4Fe-4S binding domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325833631|ref|ZP_08166080.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1] gi|316910576|gb|EFV32199.1| 4Fe-4S binding domain-containing protein [Eggerthella sp. 1_3_56FAA] gi|325485555|gb|EGC88024.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1] Length = 260 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 28/95 (29%), Gaps = 12/95 (12%) Query: 27 FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC 86 + T F G + F + C AC C CP I + G Sbjct: 153 LPEEPVTAKGRFRSGPENALFYPVLVHDAKFVATDACTACGTCVRRCPLNNIALAGGKPA 212 Query: 87 HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 +G+ C +C C CP AI G Sbjct: 213 WNGS------------CTHCMACIAGCPTRAIEYG 235 >gi|270296812|ref|ZP_06203011.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270272799|gb|EFA18662.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 373 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 10/55 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 E CI C +C C A+ + + + ID KC+ CG C C Sbjct: 192 DEASCIGCNICVKHCAHDAVHLNASRKAE----------IDYAKCVGCGQCVALC 236 >gi|251777632|ref|ZP_04820552.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243081947|gb|EES47837.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 1171 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 32/105 (30%), Gaps = 20/105 (19%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI----------------- 80 F G+T+ RG +++CI C C +CP I Sbjct: 667 FMAGTTAYEKRGIAVNVPEWL-QDKCIQCNQCSYVCPHATIRPFLLNEEEKSKAPSSIKL 725 Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD--AIVEGPN 123 + + + C CG C E CP A++ P Sbjct: 726 IEPKALKSDEKLYYSIGVTPLDCTGCGNCVEVCPAPGKALIMKPQ 770 >gi|269792086|ref|YP_003316990.1| ferredoxin [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099721|gb|ACZ18708.1| ferredoxin [Thermanaerovibrio acidaminovorans DSM 6589] Length = 240 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 18/61 (29%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 G++ CI C C C S + C+ C C E CP Sbjct: 121 EGKDLCIRCGRCVRACATFGARAISFANRGWDREVCTPLKEPTLSCVGCLSCAEVCPTGH 180 Query: 118 I 118 I Sbjct: 181 I 181 >gi|225374894|ref|ZP_03752115.1| hypothetical protein ROSEINA2194_00517 [Roseburia inulinivorans DSM 16841] gi|225213277|gb|EEG95631.1| hypothetical protein ROSEINA2194_00517 [Roseburia inulinivorans DSM 16841] Length = 263 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 22/56 (39%), Positives = 25/56 (44%), Gaps = 11/56 (19%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CIAC LCE CP+ A+ + ID KC CGLC E CP I Sbjct: 218 CIACHLCEKNCPSDAVHVVDN-----------VAYIDQEKCTKCGLCAEKCPKKII 262 Score = 34.3 bits (77), Expect = 5.0, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 21/66 (31%), Gaps = 11/66 (16%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + C+ C CP AI + G +D C CG C ACP Sbjct: 138 KSCNYGCLGFGNCVKACPFDAIHVVDGVAV-----------VDKDACKACGKCVAACPKH 186 Query: 117 AIVEGP 122 I P Sbjct: 187 LIELLP 192 >gi|161502318|ref|YP_001569430.1| putative polyferredoxin [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160863665|gb|ABX20288.1| hypothetical protein SARI_00350 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 287 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 19/69 (27%), Gaps = 11/69 (15%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C C CP I I +C CG C CP A+ Sbjct: 193 CRMCGACWRSCPENVIQFADD-----------TLTITAARCTGCGGCAAVCPHQALRLRF 241 Query: 123 NFEFATETR 131 + E A Sbjct: 242 DMEPAQTRH 250 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 21/50 (42%), Positives = 24/50 (48%), Gaps = 11/50 (22%) Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C +CPAQA + G IDM +CI CG C CPVDAI Sbjct: 29 CADVCPAQAFLLTQGQAS-----------IDMARCIACGDCLFVCPVDAI 67 >gi|187924997|ref|YP_001896639.1| formate dehydrogenase, subunit alpha [Burkholderia phytofirmans PsJN] gi|187716191|gb|ACD17415.1| formate dehydrogenase, alpha subunit [Burkholderia phytofirmans PsJN] Length = 982 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T +G + +C+ CG C Sbjct: 188 YFTYDASKCIVCNRCVRACEETQGTFALTIAGRGFESRVAASENVPFMESECVSCGACVA 247 Query: 112 ACPVDAIVE 120 ACP + E Sbjct: 248 ACPTATLQE 256 >gi|50122691|ref|YP_051858.1| putative pyruvate formate-lyase activating enzyme [Pectobacterium atrosepticum SCRI1043] gi|49613217|emb|CAG76668.1| putative pyruvate formate-lyase activating enzyme [Pectobacterium atrosepticum SCRI1043] Length = 316 Score = 43.5 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 10/94 (10%) Query: 27 FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC 86 F I P+ R + + P+ +C+ C C CP T+ + Sbjct: 29 IFMKGCNIRCPWCAN--PEGIRRAYQILFSPD---KCLHCGKCAEACPRGIHTLIADEYG 83 Query: 87 HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C+ ACP +A+ Sbjct: 84 SRFHHIDRTVQ-----CTGCRKCEAACPSNALDI 112 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 28/75 (37%), Gaps = 8/75 (10%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 K T F + +G I K C CP A +G RR + Sbjct: 5 KDITGRIFNIQKYSIYDGDGVRTLIFMKGCNIRCPWCAN--------PEGIRRAYQILFS 56 Query: 100 MIKCIYCGLCQEACP 114 KC++CG C EACP Sbjct: 57 PDKCLHCGKCAEACP 71 >gi|332298658|ref|YP_004440580.1| FAD dependent oxidoreductase [Treponema brennaborense DSM 12168] gi|332181761|gb|AEE17449.1| FAD dependent oxidoreductase [Treponema brennaborense DSM 12168] Length = 665 Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 23/66 (34%), Gaps = 2/66 (3%) Query: 57 PNGEERCIACKLCEAICPAQAITIESG--PRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + E C C CE +CP AIT ++ C CG C ACP Sbjct: 583 RSNELMCNGCSSCEKVCPYGAITYADKEFKMPDRTVAVRRVAQVNSAVCQGCGACTVACP 642 Query: 115 VDAIVE 120 A+ Sbjct: 643 SGAMDL 648 Score = 35.1 bits (79), Expect = 3.6, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 15/40 (37%), Gaps = 2/40 (5%) Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 + +D KC CG+C E CP I F R Sbjct: 232 KRKARYVDETKCTGCGICTEKCPQKKIP--NEFNLGMNNR 269 >gi|330507975|ref|YP_004384403.1| metal ABC transporter ATP-binding protein [Methanosaeta concilii GP-6] gi|328928783|gb|AEB68585.1| metal ABC transporter, ATP-binding protein [Methanosaeta concilii GP-6] Length = 586 Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 17/78 (21%), Positives = 23/78 (29%), Gaps = 8/78 (10%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 + R +C K CE CP + + I C+ CG Sbjct: 1 MRIAIINRDRCQPRKC--SKECEYFCP---PVRTGDETIVFADGKPL---ITENLCVGCG 52 Query: 108 LCQEACPVDAIVEGPNFE 125 +C CP AI E Sbjct: 53 ICVRKCPFGAITITNLPE 70 >gi|325263205|ref|ZP_08129940.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Clostridium sp. D5] gi|324031598|gb|EGB92878.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Clostridium sp. D5] Length = 258 Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 12/73 (16%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 ++ + +P +E C C C ++CP +AI E+ + KCI Sbjct: 168 HPYKETKVMPFHPIADESCTGCGTCVSVCPTEAIDRENPRQTD------------ETKCI 215 Query: 105 YCGLCQEACPVDA 117 C C + CP A Sbjct: 216 DCFACVKNCPAHA 228 Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats. Identities = 11/37 (29%), Positives = 16/37 (43%) Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +G + T+ + I C CG C CP +AI Sbjct: 165 NGNHPYKETKVMPFHPIADESCTGCGTCVSVCPTEAI 201 >gi|313672554|ref|YP_004050665.1| electron transport complex, rnfabcdge type, c subunit [Calditerrivibrio nitroreducens DSM 19672] gi|312939310|gb|ADR18502.1| electron transport complex, RnfABCDGE type, C subunit [Calditerrivibrio nitroreducens DSM 19672] Length = 433 Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 18/77 (23%), Positives = 24/77 (31%), Gaps = 4/77 (5%) Query: 41 GSTSPRFRGEHALRRYPNGE---ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 T+ G LR + CI C C CP + + D Sbjct: 332 TPTTKGTSGVIVLREDDMPDMKKSNCIRCGRCVEACPMG-LVPAIMEQFSLNEMYEKLID 390 Query: 98 IDMIKCIYCGLCQEACP 114 ++ CI CG C CP Sbjct: 391 WHVVNCIECGCCSYVCP 407 Score = 38.9 bits (89), Expect = 0.26, Method: Composition-based stats. Identities = 15/34 (44%), Positives = 17/34 (50%), Gaps = 3/34 (8%) Query: 91 RRTVRYDIDMIKCIYCGLCQEACP---VDAIVEG 121 R D+ CI CG C EACP V AI+E Sbjct: 345 REDDMPDMKKSNCIRCGRCVEACPMGLVPAIMEQ 378 >gi|309388392|gb|ADO76272.1| Electron transfer flavoprotein alpha subunit [Halanaerobium praevalens DSM 2228] gi|309389792|gb|ADO77672.1| Electron transfer flavoprotein alpha subunit [Halanaerobium praevalens DSM 2228] Length = 418 Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 28/69 (40%), Gaps = 11/69 (15%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 E++C+ C +C CP A+ +E+ +D KC CG+C + C Sbjct: 1 MLNIFEDKCVGCGVCVTSCPFDALKMENDIAV-----------VDTEKCTMCGICVKKCN 49 Query: 115 VDAIVEGPN 123 DA+ Sbjct: 50 FDAMEIDKE 58 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 17/35 (48%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 +I KC+ CG+C +CP DA+ + + Sbjct: 3 NIFEDKCVGCGVCVTSCPFDALKMENDIAVVDTEK 37 >gi|295109922|emb|CBL23875.1| electron transport complex, RnfABCDGE type, B subunit [Ruminococcus obeum A2-162] Length = 263 Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 26/82 (31%), Positives = 31/82 (37%), Gaps = 11/82 (13%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P+E+ + E CI CK CE CP AIT+ Sbjct: 192 PYEQQTFVGCSSTAKGKAVTTACEIGCIGCKKCEKTCPNGAITVTD-----------FCA 240 Query: 97 DIDMIKCIYCGLCQEACPVDAI 118 ID KC CG C+EACP I Sbjct: 241 HIDYDKCTNCGACKEACPRHVI 262 Score = 34.3 bits (77), Expect = 6.1, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 23/69 (33%), Gaps = 5/69 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGT-----RRTVRYDIDMIKCIYCGLCQEAC 113 E C AC C A CP I + + + I CI C C++ C Sbjct: 169 NREACKACGKCIAKCPHHLIELAPYEQQTFVGCSSTAKGKAVTTACEIGCIGCKKCEKTC 228 Query: 114 PVDAIVEGP 122 P AI Sbjct: 229 PNGAITVTD 237 >gi|300087732|ref|YP_003758254.1| NADH dehydrogenase [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527465|gb|ADJ25933.1| NADH dehydrogenase (quinone) [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 624 Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 34/91 (37%), Gaps = 14/91 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 +R+ FK + + ++ L RY E C C LC CPA AI+ + Sbjct: 540 TIRH-FKDEYVAHIQEKRCPAGVCKP----LIRYYIVEANCNGCSLCIKECPADAISFQG 594 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + +D KC CG C + C Sbjct: 595 KKQPV---------KLDQDKCTKCGACYDIC 616 Score = 37.8 bits (86), Expect = 0.56, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 17/51 (33%) Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 I+ + +RY I C C LC + CP DAI Sbjct: 543 HFKDEYVAHIQEKRCPAGVCKPLIRYYIVEANCNGCSLCIKECPADAISFQ 593 >gi|300087731|ref|YP_003758253.1| ferredoxin [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527464|gb|ADJ25932.1| ferredoxin [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 243 Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 3/69 (4%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTV--RYDIDMIKCIYCGLCQEACPVDA 117 + CI C LC +C A+ + +++ + GTRR V + + CI CG C CP A Sbjct: 124 NDNCILCGLCNRVC-AEVVGVDAISLVNRGTRREVALPFYDETNDCIACGACSYICPTKA 182 Query: 118 IVEGPNFEF 126 I E Sbjct: 183 IQMKDTKEI 191 Score = 35.5 bits (80), Expect = 2.5, Method: Composition-based stats. Identities = 20/61 (32%), Positives = 27/61 (44%), Gaps = 1/61 (1%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R E AL Y + CIAC C ICP +AI ++ + D M +C CG Sbjct: 154 RREVALPFY-DETNDCIACGACSYICPTKAIQMKDTKEIRTMIWPNSKADFKMQQCESCG 212 Query: 108 L 108 + Sbjct: 213 V 213 >gi|257469320|ref|ZP_05633414.1| pyruvate-flavodoxin oxidoreductase [Fusobacterium ulcerans ATCC 49185] gi|317063567|ref|ZP_07928052.1| pyruvate synthase [Fusobacterium ulcerans ATCC 49185] gi|313689243|gb|EFS26078.1| pyruvate synthase [Fusobacterium ulcerans ATCC 49185] Length = 1194 Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 38/115 (33%), Gaps = 21/115 (18%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA------------QAITIESGPR 85 FE G+++ RG E CI C C +CP +A + Sbjct: 681 FENGTSAFEKRGIAVHVPVWI-AENCIQCNQCSYVCPHAVLRPFLMTAEEKAASPVELKT 739 Query: 86 CHDGTRRTVRYDIDMI----KCIYCGLCQEACP--VDAIVEGPNFE--FATETRQ 132 + ++ M C CG C CP A+V P + A E R+ Sbjct: 740 IKPIGKGLEGFEYRMQVSALDCTGCGSCANTCPAKEKALVMKPIADSLEAGEDRK 794 >gi|257064392|ref|YP_003144064.1| 4Fe-4S protein [Slackia heliotrinireducens DSM 20476] gi|256792045|gb|ACV22715.1| 4Fe-4S protein [Slackia heliotrinireducens DSM 20476] Length = 398 Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 18/54 (33%), Gaps = 11/54 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 C C C I E +D KCI CG C CP DAI Sbjct: 33 CMRCLESCAGGCIGYEDNE-----------ITVDPTKCIGCGTCATVCPTDAIH 75 Score = 42.0 bits (97), Expect = 0.025, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 6/65 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C++C CP A G + V ++C C LC + CP A+ Sbjct: 291 NTDECRGCRMCATFCPTGANFKFQTKSGSVGVKHRV------LQCANCRLCLDICPDKAL 344 Query: 119 VEGPN 123 Sbjct: 345 QLSEE 349 >gi|256619351|ref|ZP_05476197.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Enterococcus faecalis ATCC 4200] gi|256598878|gb|EEU18054.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Enterococcus faecalis ATCC 4200] Length = 151 Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 15/69 (21%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + RY +++CI C C+ +C + + + ++CI CG C+ A Sbjct: 95 IFRYRLDKDKCINCGKCKKVCQMN---------------KDSVENCNHLECIRCGRCKNA 139 Query: 113 CPVDAIVEG 121 CPVDAI G Sbjct: 140 CPVDAISYG 148 >gi|255015364|ref|ZP_05287490.1| related to F420H2-dehydrogenase, beta subunit [Bacteroides sp. 2_1_7] Length = 393 Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 6/58 (10%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 ++ C C C +C QA++++ + ID+ KC C LC++ACPV Sbjct: 5 CDKKDCTGCSSCYNVCVHQALSMQPDKEG------FLYPVIDVDKCKECSLCEKACPV 56 >gi|302873024|ref|YP_003841657.1| hypothetical protein Clocel_0104 [Clostridium cellulovorans 743B] gi|307688817|ref|ZP_07631263.1| ferredoxin, 4Fe-4S [Clostridium cellulovorans 743B] gi|302575881|gb|ADL49893.1| hypothetical protein Clocel_0104 [Clostridium cellulovorans 743B] Length = 56 Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 11/58 (18%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + CI+C C + CP AI Y+I+ CI CG C CPV A Sbjct: 6 NDSCISCGACASECPVSAINQGDAQ-----------YEINDSSCIDCGNCANVCPVGA 52 >gi|168702048|ref|ZP_02734325.1| cyclic nucleotide-binding domain (cNMP-BD) protein [Gemmata obscuriglobus UQM 2246] Length = 917 Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 12/63 (19%) Query: 61 ERCIACK--LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C +C+ C CP AI R + CI CGLC+ CP AI Sbjct: 800 TSCRSCQKPYCMEGCPVDAIHR----------RGAHLEVVIENHCIGCGLCERNCPYGAI 849 Query: 119 VEG 121 Sbjct: 850 HMT 852 Score = 41.2 bits (95), Expect = 0.043, Method: Composition-based stats. Identities = 23/92 (25%), Positives = 30/92 (32%), Gaps = 12/92 (13%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 Y E R L CI C LCE CP AI + + + + Sbjct: 809 YCMEGCPVDAIHRRGAHLEVVIENH--CIGCGLCERNCPYGAIHMTARGTPNPAATQHPS 866 Query: 96 YD------IDMIKCIYCG----LCQEACPVDA 117 D + C CG C +ACP +A Sbjct: 867 GDPLKIAARRAVNCDLCGGNEPFCVQACPHEA 898 Score = 40.9 bits (94), Expect = 0.068, Method: Composition-based stats. Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 5/66 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACP 114 +RCI C C C ++ + G + +D + C+ CG C +CP Sbjct: 300 DHDRCIVCDRCVRAC-SEVKPFKVIGHTGKGYGTRISFDLDSVMRDSTCVQCGECMNSCP 358 Query: 115 VDAIVE 120 A+ Sbjct: 359 TGALSL 364 >gi|297619109|ref|YP_003707214.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanococcus voltae A3] gi|297378086|gb|ADI36241.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus voltae A3] Length = 654 Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 23/65 (35%), Gaps = 7/65 (10%) Query: 61 ERCIACKLCEAICPAQAIT-------IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 E+C C C +CP + +Y IDM CI CGLC C Sbjct: 244 EKCTGCGSCAEVCPISVPNEFDMGLGMRKAIYKPFPQAVPAKYTIDMEHCIDCGLCSRVC 303 Query: 114 PVDAI 118 AI Sbjct: 304 GPQAI 308 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 21/66 (31%), Gaps = 7/66 (10%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + C AC +C CP A + ++ C CG C CP Sbjct: 578 NIDSDICGACGICVQQCPYGAPRFVEKD-------GKLSVEVISALCKGCGTCAAGCPSG 630 Query: 117 AIVEGP 122 A+ + Sbjct: 631 ALEQSH 636 Score = 35.5 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 10/27 (37%), Positives = 11/27 (40%), Gaps = 3/27 (11%) Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEF 126 KC CG C E CP I F+ Sbjct: 243 EEKCTGCGSCAEVCP---ISVPNEFDM 266 >gi|229581344|ref|YP_002839743.1| hypothetical protein YN1551_0692 [Sulfolobus islandicus Y.N.15.51] gi|228012060|gb|ACP47821.1| conserved hypothetical protein [Sulfolobus islandicus Y.N.15.51] Length = 619 Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 1/58 (1%) Query: 60 EERCIACKLCEAICPAQAITIESGPRC-HDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 CI C C ++CP T + + + D+ C CGLC++ CPV Sbjct: 284 FNGCILCGKCVSVCPYGEQTNDVFHTPLGFYSISYFEKENDLANCHMCGLCEQVCPVR 341 >gi|154151379|ref|YP_001404997.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Candidatus Methanoregula boonei 6A8] gi|153999931|gb|ABS56354.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Methanoregula boonei 6A8] Length = 428 Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 22/80 (27%), Gaps = 7/80 (8%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK--- 102 F+ C C C +CP + + + Sbjct: 82 DFKVTVREHPRYIDMVACTGCGDCIEVCPVEVYNRFDAGVGVRKAIYKPHPQVVPDRVVK 141 Query: 103 ----CIYCGLCQEACPVDAI 118 CI CGLC ++C AI Sbjct: 142 DNEHCIECGLCYDSCGPQAI 161 >gi|34540362|ref|NP_904841.1| pyruvate ferredoxin/flavodoxin oxidoreductase family protein [Porphyromonas gingivalis W83] gi|188995282|ref|YP_001929534.1| pyruvate-flavodoxin oxidoreductase [Porphyromonas gingivalis ATCC 33277] gi|34396674|gb|AAQ65740.1| pyruvate ferredoxin/flavodoxin oxidoreductase family protein [Porphyromonas gingivalis W83] gi|188594962|dbj|BAG33937.1| pyruvate-flavodoxin oxidoreductase [Porphyromonas gingivalis ATCC 33277] Length = 1193 Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 33/102 (32%), Gaps = 19/102 (18%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV---------- 94 RG A + C+ C C +CP I G + Sbjct: 677 RGVAAFVPVWE-ADNCVQCNQCAYVCPHATIRPFVLTKEEEEKTGVKVLKAVGKQFPDMG 735 Query: 95 -RYDIDMIKCIYCGLCQEACPVD----AIVEGPNFEFATETR 131 R ++++ C+ C C + CP + A+ P E E + Sbjct: 736 FRIQVNVMDCLGCSNCVDVCPGNKNGKALTMQPIEEQYEEQK 777 >gi|257456864|ref|ZP_05622045.1| nitrogen fixation protein [Treponema vincentii ATCC 35580] gi|257445573|gb|EEV20635.1| nitrogen fixation protein [Treponema vincentii ATCC 35580] Length = 425 Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 24/113 (21%), Positives = 36/113 (31%), Gaps = 12/113 (10%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERC 63 F+ + + L + + +++ P KG S G+ E C Sbjct: 306 FKSKNTHIILNGLLRGTLV---------DSLDLPAGKGIKSIHAVGKD--IDIQQQLEEC 354 Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 C C CPA I++ R R + C CG C CPV Sbjct: 355 GHCGQCLRSCPAYIDPIDTVRRI-QKKRYDAETMRSIALCSGCGCCSAVCPVR 406 >gi|226940366|ref|YP_002795440.1| Electron transport complex protein rnfC [Laribacter hongkongensis HLHK9] gi|226715293|gb|ACO74431.1| Electron transport complex protein rnfC [Laribacter hongkongensis HLHK9] Length = 440 Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 22/70 (31%), Gaps = 2/70 (2%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI C C CP G R + ++ CI CG C +CP I Sbjct: 364 HRQPCIRCGQCIDACPMGLNPSLLG-RLAGKQEYYLTARHGVLDCIECGACTLSCP-SGI 421 Query: 119 VEGPNFEFAT 128 + Sbjct: 422 PLVQYHRMSK 431 >gi|160934887|ref|ZP_02082273.1| hypothetical protein CLOLEP_03762 [Clostridium leptum DSM 753] gi|156866340|gb|EDO59712.1| hypothetical protein CLOLEP_03762 [Clostridium leptum DSM 753] Length = 56 Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 24/57 (42%), Positives = 28/57 (49%), Gaps = 11/57 (19%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + CI+C CEA CP AI+ G Y ID CI CG C +ACPV A Sbjct: 7 DECISCGACEAGCPVNAISEGDGK-----------YVIDADTCIDCGACADACPVGA 52 >gi|148977610|ref|ZP_01814186.1| electron transport complex protein RnfC [Vibrionales bacterium SWAT-3] gi|145963125|gb|EDK28393.1| electron transport complex protein RnfC [Vibrionales bacterium SWAT-3] Length = 964 Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 38/105 (36%), Gaps = 9/105 (8%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 CI C C CPA + + ++++ CI CG C CP I Sbjct: 377 ECIRCSACAEACPAS-LLPQQLQWHAKANELDKCEELNIKDCIECGACAFVCP-SEIPLV 434 Query: 122 PNFEFAT---ETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + A +TR++ ER R+E + R + D R Sbjct: 435 QYYRQAKAEIKTRKDEAAAAER---AKIRFEEKSAR-MERDKAER 475 >gi|167039314|ref|YP_001662299.1| putative PAS/PAC sensor protein [Thermoanaerobacter sp. X514] gi|166853554|gb|ABY91963.1| putative PAS/PAC sensor protein [Thermoanaerobacter sp. X514] Length = 580 Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 25/73 (34%), Gaps = 11/73 (15%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 L + C C C CP +AI + G ++ CIYCG C Sbjct: 1 MILDVISVSKANCKNCYRCVRHCPVKAIKVVGGQA-----------EVVDSLCIYCGRCV 49 Query: 111 EACPVDAIVEGPN 123 CP +A + Sbjct: 50 IECPQNAKKIRND 62 >gi|332671079|ref|YP_004454087.1| hydrogenase, Fe-only [Cellulomonas fimi ATCC 484] gi|332340117|gb|AEE46700.1| hydrogenase, Fe-only [Cellulomonas fimi ATCC 484] Length = 1088 Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 23/87 (26%), Gaps = 3/87 (3%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 P +CI+C LC A C + G D Sbjct: 608 PLHVRPWTPVAQDHPFIVRDHNKCISCGLCVAACAQVEGVDVLAFQFDGGRLTVGTRDDQ 667 Query: 100 M---IKCIYCGLCQEACPVDAIVEGPN 123 C+ CG C ACP A+ Sbjct: 668 PLGLTDCVSCGQCVRACPCGALDYVRE 694 >gi|303247145|ref|ZP_07333420.1| fumarate reductase/succinate dehydrogenase flavoprotein domain protein [Desulfovibrio fructosovorans JJ] gi|302491571|gb|EFL51456.1| fumarate reductase/succinate dehydrogenase flavoprotein domain protein [Desulfovibrio fructosovorans JJ] Length = 651 Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 21/63 (33%), Gaps = 4/63 (6%) Query: 59 GEERCIACKLCEAIC-PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 RC C + C A+ + G R + C+ CG C CP +A Sbjct: 553 DLARCKGTGACVSACLNEGALRLVP---MDVGGETVNRAQVTPALCLGCGACVAVCPENA 609 Query: 118 IVE 120 I Sbjct: 610 INI 612 >gi|298376335|ref|ZP_06986291.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 3_1_19] gi|298267372|gb|EFI09029.1| 4Fe-4S binding domain-containing protein [Bacteroides sp. 3_1_19] Length = 262 Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 11/87 (12%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 KG+ R +G + + C C+ C +CP AI++ D Sbjct: 169 EVKGNFPYRVKGPSTPQAPVTDNDLCTQCEYCVDVCPTHAISLADEGMYSD--------- 219 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNF 124 +CI C C + CP A + Sbjct: 220 --PNQCIKCCACVKECPEGARTFDTPY 244 Score = 35.5 bits (80), Expect = 2.4, Method: Composition-based stats. Identities = 7/30 (23%), Positives = 10/30 (33%) Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATET 130 C C C + CP AI ++ Sbjct: 192 DLCTQCEYCVDVCPTHAISLADEGMYSDPN 221 >gi|260437057|ref|ZP_05790873.1| RnfB/polyferredoxin [Butyrivibrio crossotus DSM 2876] gi|292810366|gb|EFF69571.1| RnfB/polyferredoxin [Butyrivibrio crossotus DSM 2876] Length = 263 Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 23/62 (37%), Gaps = 11/62 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI C LC C AI +++ ID KC CG C E CP I Sbjct: 212 CKSGCIGCTLCVKQCEYGAIVMDNN-----------IPVIDYEKCTGCGKCAEKCPKKII 260 Query: 119 VE 120 Sbjct: 261 HL 262 Score = 38.9 bits (89), Expect = 0.21, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 5/70 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQEAC 113 ++ C +C C CP I + + D CI C LC + C Sbjct: 167 DKKLCTSCGKCVKACPKNLIELRPEKDIATVYCSSHEKGKAVMDACKSGCIGCTLCVKQC 226 Query: 114 PVDAIVEGPN 123 AIV N Sbjct: 227 EYGAIVMDNN 236 Score = 37.0 bits (84), Expect = 0.91, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 27/72 (37%), Gaps = 11/72 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + C+ C +C AI+I +G D C CG C +ACP + Sbjct: 136 KSCNYGCLGFGSCVKVCSNNAISIVNGVAVVDKK-----------LCTSCGKCVKACPKN 184 Query: 117 AIVEGPNFEFAT 128 I P + AT Sbjct: 185 LIELRPEKDIAT 196 >gi|237665790|ref|ZP_04525778.1| dihydroorotate dehydrogenase family protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|237658737|gb|EEP56289.1| dihydroorotate dehydrogenase family protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 362 Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 11/61 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +++C C+LCE CP AIT ID C CGLC+ CP AI Sbjct: 310 NKDKCTNCRLCEKACPYFAITSIDNQ-----------IKIDTKNCFGCGLCESRCPSKAI 358 Query: 119 V 119 Sbjct: 359 Y 359 Score = 35.5 bits (80), Expect = 2.5, Method: Composition-based stats. Identities = 12/26 (46%), Positives = 15/26 (57%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPN 123 I+ KC C LC++ACP AI N Sbjct: 309 INKDKCTNCRLCEKACPYFAITSIDN 334 >gi|168184134|ref|ZP_02618798.1| iron-sulfur cluster-binding protein [Clostridium botulinum Bf] gi|237794698|ref|YP_002862250.1| iron-sulfur cluster-binding protein [Clostridium botulinum Ba4 str. 657] gi|182672734|gb|EDT84695.1| iron-sulfur cluster-binding protein [Clostridium botulinum Bf] gi|229261438|gb|ACQ52471.1| iron-sulfur cluster-binding protein [Clostridium botulinum Ba4 str. 657] Length = 425 Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 3/67 (4%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++RC+ C C +CP +A + ++ C+ CG+C + C +AI Sbjct: 290 NKDRCVGCGKCTKVCPMEA---IKLKETSLENHNSKIAELSEDLCLGCGVCVKNCKTNAI 346 Query: 119 VEGPNFE 125 E Sbjct: 347 KLVRRKE 353 Score = 41.6 bits (96), Expect = 0.035, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 6/64 (9%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 PN C C CEA A+ + DI+ +C+ CG C + CP++ Sbjct: 254 PNFICNCCKC-HCEAFVSAK-----KFGFLVPVNTTSYLPDINKDRCVGCGKCTKVCPME 307 Query: 117 AIVE 120 AI Sbjct: 308 AIKL 311 >gi|153815520|ref|ZP_01968188.1| hypothetical protein RUMTOR_01755 [Ruminococcus torques ATCC 27756] gi|317502217|ref|ZP_07960391.1| nitrite and sulphite reductase 4Fe-4S region [Lachnospiraceae bacterium 8_1_57FAA] gi|331088784|ref|ZP_08337694.1| hypothetical protein HMPREF1025_01277 [Lachnospiraceae bacterium 3_1_46FAA] gi|145847162|gb|EDK24080.1| hypothetical protein RUMTOR_01755 [Ruminococcus torques ATCC 27756] gi|316896426|gb|EFV18523.1| nitrite and sulphite reductase 4Fe-4S region [Lachnospiraceae bacterium 8_1_57FAA] gi|330407307|gb|EGG86810.1| hypothetical protein HMPREF1025_01277 [Lachnospiraceae bacterium 3_1_46FAA] Length = 864 Score = 43.5 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 25/129 (19%), Positives = 36/129 (27%), Gaps = 28/129 (21%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLC--EAICPAQAITIESGPRCHDGTRRT 93 P G + E+C C++C E CP A + G Sbjct: 694 CPNNCVKPDLNDLGIIGQKVPWVDLEKCRGCRICQVEKNCPIHAAKMVDGKIV------- 746 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIV 153 ID C +CG C CP F + Y G RW ++ Sbjct: 747 ----IDENVCNHCGRCISKCPFGV---TEEF-VSGYR----VY-------IGGRWGKKVA 787 Query: 154 RNIVTDSPY 162 R + + Sbjct: 788 RGRYLEKVF 796 >gi|317490285|ref|ZP_07948771.1| nitroreductase [Eggerthella sp. 1_3_56FAA] gi|325833585|ref|ZP_08166034.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1] gi|316910575|gb|EFV32198.1| nitroreductase [Eggerthella sp. 1_3_56FAA] gi|325485509|gb|EGC87978.1| 4Fe-4S binding domain protein [Eggerthella sp. HGA1] Length = 260 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 11/63 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E RCI C LC CPA I +E G + C+ CG C CP A+ Sbjct: 10 DEARCIGCGLCREDCPAANIVVEQGKAA-----------VISQDCLMCGHCVAICPQAAV 58 Query: 119 VEG 121 Sbjct: 59 TMT 61 Score = 35.5 bits (80), Expect = 2.6, Method: Composition-based stats. Identities = 12/21 (57%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID +CI CGLC+E CP I Sbjct: 9 IDEARCIGCGLCREDCPAANI 29 >gi|290968031|ref|ZP_06559580.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Megasphaera genomosp. type_1 str. 28L] gi|290781937|gb|EFD94516.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Megasphaera genomosp. type_1 str. 28L] Length = 593 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 27/80 (33%), Gaps = 11/80 (13%) Query: 40 KGSTSPRFRGEHALRRYPN-GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 K T R R + CI CK C A+ E+ R I Sbjct: 518 KKFTPEETRQYKVRRVPCRVDRDTCIGCKTCLR-TGCPALRYETDSRKAH---------I 567 Query: 99 DMIKCIYCGLCQEACPVDAI 118 C+ C +C + CPV AI Sbjct: 568 SQADCVGCTVCLQVCPVQAI 587 >gi|317152072|ref|YP_004120120.1| nitroreductase [Desulfovibrio aespoeensis Aspo-2] gi|316942323|gb|ADU61374.1| nitroreductase [Desulfovibrio aespoeensis Aspo-2] Length = 267 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 18/67 (26%), Gaps = 7/67 (10%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 C C C A CP I + CI CG C CPV Sbjct: 1 MFCDTGICKRCGACAAECPYSLIVEDGEGFPWLRPAARKT-------CIGCGHCVAVCPV 53 Query: 116 DAIVEGP 122 A+ Sbjct: 54 GALTLPD 60 >gi|326201392|ref|ZP_08191264.1| hydrogenase, Fe-only [Clostridium papyrosolvens DSM 2782] gi|325988960|gb|EGD49784.1| hydrogenase, Fe-only [Clostridium papyrosolvens DSM 2782] Length = 583 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 3/70 (4%) Query: 59 GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115 +C+ C+ C ++C Q +++ S + + +D + + C CG C CPV Sbjct: 144 DPNKCVLCRRCVSMCKNIQTVSVISATERGFKSAISCAFDRSLEEVPCTMCGQCISVCPV 203 Query: 116 DAIVEGPNFE 125 A+ E + E Sbjct: 204 GALREKDDTE 213 >gi|253997398|ref|YP_003049462.1| formate dehydrogenase subunit alpha [Methylotenera mobilis JLW8] gi|253984077|gb|ACT48935.1| formate dehydrogenase, alpha subunit [Methylotenera mobilis JLW8] Length = 954 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 2/73 (2%) Query: 55 RYPNGEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + +CI C C C + R + D +C+ CG C +A Sbjct: 162 YFTFDPSKCIVCSRCVRACEETQGTFALTISGRGFESKVSAGNKDFLDSECVSCGACVQA 221 Query: 113 CPVDAIVEGPNFE 125 CP ++E E Sbjct: 222 CPTATLIEKTVIE 234 >gi|224367282|ref|YP_002601445.1| HydA1 [Desulfobacterium autotrophicum HRM2] gi|223689998|gb|ACN13281.1| HydA1 [Desulfobacterium autotrophicum HRM2] Length = 464 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 22/55 (40%), Gaps = 10/55 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 E C C C+ ICP A++ G ID KCI CG C + C Sbjct: 9 DEALCTGCGRCKEICPVGAVSGTPGQPHK----------IDQKKCIICGQCVQIC 53 Score = 38.5 bits (88), Expect = 0.28, Method: Composition-based stats. Identities = 12/32 (37%), Positives = 15/32 (46%) Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + ID C CG C+E CPV A+ P Sbjct: 1 MKDAIVAIDEALCTGCGRCKEICPVGAVSGTP 32 >gi|254167532|ref|ZP_04874384.1| 4Fe-4S binding domain protein [Aciduliprofundum boonei T469] gi|197623795|gb|EDY36358.1| 4Fe-4S binding domain protein [Aciduliprofundum boonei T469] Length = 62 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 23/66 (34%), Gaps = 11/66 (16%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + C C C CP + ++ ID KCI CG C A Sbjct: 1 MNMMNVDPAVCNYCGACVGSCPVNCMFLDE-----------TIVRIDEDKCIKCGFCIRA 49 Query: 113 CPVDAI 118 CPV AI Sbjct: 50 CPVGAI 55 >gi|167586514|ref|ZP_02378902.1| formate dehydrogenase, alpha subunit [Burkholderia ubonensis Bu] Length = 983 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 23/76 (30%), Gaps = 3/76 (3%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCI 104 R + + + +CI C C C T + +C+ Sbjct: 180 RKDESNPYFTYDPSKCIVCNRCVRACEETQGTFALTIAARGFESRVAAGESEAFMDSECV 239 Query: 105 YCGLCQEACPVDAIVE 120 CG C ACP + E Sbjct: 240 SCGACVAACPTATLQE 255 >gi|281358699|ref|ZP_06245176.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548] gi|281314825|gb|EFA98861.1| NADH dehydrogenase (quinone) [Victivallis vadensis ATCC BAA-548] Length = 634 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 10/68 (14%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 AL R +C C C CP AIT + + ID KCI CG C+ Sbjct: 574 KALARPEILASKCKGCTACARKCPVGAITG----------KVKEVHVIDADKCIKCGACK 623 Query: 111 EACPVDAI 118 AC A+ Sbjct: 624 AACKFGAV 631 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 14/40 (35%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + + R +I KC C C CPV AI Sbjct: 562 HVFKKICPVGECKALARPEILASKCKGCTACARKCPVGAI 601 >gi|329897534|ref|ZP_08272141.1| Thioredoxin reductase [gamma proteobacterium IMCC3088] gi|328921129|gb|EGG28534.1| Thioredoxin reductase [gamma proteobacterium IMCC3088] Length = 438 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 21/66 (31%), Gaps = 9/66 (13%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 +C+ C C CP G I+ CI G C+ ACP Sbjct: 52 HPIIDPSKCLGCGACVNACPEG---------DVLGLIGGKSVLINGANCIGHGACKAACP 102 Query: 115 VDAIVE 120 DAI Sbjct: 103 FDAIDL 108 Score = 38.9 bits (89), Expect = 0.25, Method: Composition-based stats. Identities = 12/34 (35%), Positives = 16/34 (47%) Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + + H T+ ID KC+ CG C ACP Sbjct: 38 DDAVQSHMTEPPTLHPIIDPSKCLGCGACVNACP 71 >gi|322791201|gb|EFZ15738.1| hypothetical protein SINV_11846 [Solenopsis invicta] Length = 608 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 22/56 (39%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 K C C + G C + T + I CI CG+C + CP +AI Sbjct: 27 KRCRQECKRSCPVVRMGKLCIEVTPNSKIAAISEELCIGCGICVKKCPFEAISIIN 82 >gi|302669638|ref|YP_003829598.1| ferredoxin [Butyrivibrio proteoclasticus B316] gi|302394111|gb|ADL33016.1| ferredoxin [Butyrivibrio proteoclasticus B316] Length = 56 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 23/59 (38%), Positives = 27/59 (45%), Gaps = 11/59 (18%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 CI+C C A CP AI+ +Y ID CI CG C CPV AI +G Sbjct: 9 CISCGSCAAQCPVSAISQGD-----------TQYVIDANTCIDCGSCAAQCPVSAISQG 56 >gi|269139126|ref|YP_003295827.1| putative oxidoreductase Fe-S binding subunit [Edwardsiella tarda EIB202] gi|267984787|gb|ACY84616.1| putative oxidoreductase Fe-S binding subunit [Edwardsiella tarda EIB202] Length = 678 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 23/73 (31%), Gaps = 13/73 (17%) Query: 48 RGEHALRRYPNGEERCIACK--LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 R R C C+ C +CP AI + + KCI Sbjct: 41 RIHVIRRGDRRTALLCRHCEDAPCANVCPNGAIE-----------KYNDSIQVRQEKCIG 89 Query: 106 CGLCQEACPVDAI 118 C C ACP AI Sbjct: 90 CKTCVVACPFGAI 102 Score = 37.0 bits (84), Expect = 0.86, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 28/70 (40%), Gaps = 8/70 (11%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL------CQEAC 113 +E+CI CK C CP AI + + +VR + KC C C AC Sbjct: 84 QEKCIGCKTCVVACPFGAIEVITQSDPRSNHPDSVRANAH--KCDLCDEVADGPSCVAAC 141 Query: 114 PVDAIVEGPN 123 P +A+ Sbjct: 142 PSNALQLISE 151 >gi|257085350|ref|ZP_05579711.1| formate dehydrogenase [Enterococcus faecalis Fly1] gi|256993380|gb|EEU80682.1| formate dehydrogenase [Enterococcus faecalis Fly1] Length = 906 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 3/92 (3%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV 94 F +G P + + + + E+CI C+ C +C + + + Sbjct: 133 FTEGKRMPCHQEDTSNPFFSYDPEKCIMCRRCARVCQLRQGRDVLSIANRGFETKMMPSY 192 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 D C CG C +CP A+ E+ Sbjct: 193 GQAFDQSICESCGNCVSSCPTGALTAKDTKEY 224 >gi|225075334|ref|ZP_03718533.1| hypothetical protein NEIFLAOT_00337 [Neisseria flavescens NRL30031/H210] gi|224953509|gb|EEG34718.1| hypothetical protein NEIFLAOT_00337 [Neisseria flavescens NRL30031/H210] Length = 483 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 18/65 (27%), Gaps = 10/65 (15%) Query: 62 RCIACKLCEAICPA-----QAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQE 111 +CI C C CP A + P C CG C E Sbjct: 317 QCIRCGACMNHCPVYTRIGGAAYGTTYPGPIGEIISPHLLGLDATRDLPTACTMCGACVE 376 Query: 112 ACPVD 116 CPV Sbjct: 377 VCPVR 381 >gi|120603486|ref|YP_967886.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfovibrio vulgaris DP4] gi|120563715|gb|ABM29459.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Desulfovibrio vulgaris DP4] Length = 452 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 36/124 (29%), Gaps = 37/124 (29%) Query: 58 NGEERCIACKLCEAICPAQA-----------------------ITIESGPRCHDGTRRTV 94 + C C LC CP A E + Sbjct: 289 CDADACTGCGLCVRACPVDALRIVREDGQRTQAGEAVDAGGDVPDDEVAASTARRGKARR 348 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVR 154 R ++D C+ CG+C CP A+ E R + E D +E I++ Sbjct: 349 RLEVDTSVCLGCGVCALRCPTGALRL--------EERPARVFHPE------DSFERVILQ 394 Query: 155 NIVT 158 ++ Sbjct: 395 SLER 398 >gi|194335216|ref|YP_002017010.1| methyl-viologen-reducing hydrogenase delta subunit [Pelodictyon phaeoclathratiforme BU-1] gi|194307693|gb|ACF42393.1| methyl-viologen-reducing hydrogenase delta subunit [Pelodictyon phaeoclathratiforme BU-1] Length = 750 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 20/62 (32%), Gaps = 10/62 (16%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E C C+ C CP A E + +C CG+C ACP I Sbjct: 545 ESCTQCRRCTVECPFGAYDEEKDGTPL----------LYPSRCRRCGVCMGACPQRVISF 594 Query: 121 GP 122 Sbjct: 595 KD 596 >gi|325273455|ref|ZP_08139703.1| dihydropyrimidine dehydrogenase subunit B [Pseudomonas sp. TJI-51] gi|324101411|gb|EGB99009.1| dihydropyrimidine dehydrogenase subunit B [Pseudomonas sp. TJI-51] Length = 424 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 4/66 (6%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV- 115 ++ CI C C C + + DGT Y + +C+ C LCQ CPV Sbjct: 339 HIDQQACIGCGRCHIACEDTSHQAIASTLKADGTHA---YSVIEEECVGCNLCQITCPVE 395 Query: 116 DAIVEG 121 + I Sbjct: 396 NCIDMQ 401 >gi|257416000|ref|ZP_05592994.1| formate dehydrogenase [Enterococcus faecalis AR01/DG] gi|257157828|gb|EEU87788.1| formate dehydrogenase [Enterococcus faecalis ARO1/DG] Length = 906 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 3/92 (3%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV 94 F +G P + + + + E+CI C+ C +C + + + Sbjct: 133 FTEGKRMPCHQEDTSNPFFSYDPEKCIMCRRCARVCQLRQGRDVLSIANRGFETKMMPSY 192 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 D C CG C +CP A+ E+ Sbjct: 193 GQAFDQSICESCGNCVSSCPTGALTAKDTKEY 224 >gi|237654657|ref|YP_002890971.1| ferredoxin-type protein NapF [Thauera sp. MZ1T] gi|237625904|gb|ACR02594.1| ferredoxin-type protein NapF [Thauera sp. MZ1T] Length = 188 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 27/84 (32%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E T+ R + C C C A C +A+ E + Sbjct: 61 EACPTTILVRMDGGFPGVDFSRGECSFCGDCVAACEPRALWREDASAAPWDRVAVIGAAC 120 Query: 99 DMIKCIYCGLCQEACPVDAIVEGP 122 + + C +C EACP AI P Sbjct: 121 LAARGVECRVCGEACPEGAIRFRP 144 >gi|226323506|ref|ZP_03799024.1| hypothetical protein COPCOM_01281 [Coprococcus comes ATCC 27758] gi|225208190|gb|EEG90544.1| hypothetical protein COPCOM_01281 [Coprococcus comes ATCC 27758] Length = 56 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 11/64 (17%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C++C CE+ CP AI++ + ID C+ CG C+ ACP Sbjct: 1 MAHVISDECVSCGACESECPVGAISMGAD-----------HMQIDASACVDCGACESACP 49 Query: 115 VDAI 118 AI Sbjct: 50 TGAI 53 >gi|255574746|ref|XP_002528281.1| rnase l inhibitor, putative [Ricinus communis] gi|223532318|gb|EEF34119.1| rnase l inhibitor, putative [Ricinus communis] Length = 591 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 24/56 (42%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 K C C +++G C + T + I CI CG+C + CP +AI Sbjct: 19 KKCRQECKKSCPVVKTGRLCIEVTPASKIAFISEELCIGCGICVKKCPFEAIQIIN 74 >gi|218441073|ref|YP_002379402.1| bidirectional hydrogenase complex protein HoxU [Cyanothece sp. PCC 7424] gi|218173801|gb|ACK72534.1| 4Fe-4S ferredoxin, iron-sulphur binding, conserved site [Cyanothece sp. PCC 7424] Length = 238 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 4/69 (5%) Query: 55 RYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLCQ 110 + RC+ C C +C A + R + + + C CG C Sbjct: 140 MFGIDHNRCVLCTRCVRVCDEIEGAHVWDVANRGANEKIISGLNQPWGTVSACTSCGKCV 199 Query: 111 EACPVDAIV 119 +ACP AI Sbjct: 200 DACPTGAIF 208 >gi|121534032|ref|ZP_01665858.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus carboxydivorans Nor1] gi|121307543|gb|EAX48459.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus carboxydivorans Nor1] Length = 205 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 11/62 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +++CI C +C +CPA+ ITI+ +ID+ C CG C + CPV AI Sbjct: 11 DKDKCIGCGVCSKVCPAETITIKERKA-----------EIDLNNCRGCGACNQRCPVYAI 59 Query: 119 VE 120 Sbjct: 60 TM 61 >gi|170721018|ref|YP_001748706.1| dihydropyrimidine dehydrogenase [Pseudomonas putida W619] gi|169759021|gb|ACA72337.1| dihydroorotate dehydrogenase family protein [Pseudomonas putida W619] Length = 424 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 4/65 (6%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV- 115 ++ CI C C C + + DGT Y + +C+ C LCQ CPV Sbjct: 339 HIDQDACIGCGRCHIACEDTSHQAIASTLKADGTHA---YSVIEDECVGCNLCQITCPVE 395 Query: 116 DAIVE 120 + I Sbjct: 396 NCIDM 400 >gi|52549085|gb|AAU82934.1| hypothetical protein GZ23H9_29 [uncultured archaeon GZfos23H9] Length = 103 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 22/75 (29%), Positives = 28/75 (37%), Gaps = 12/75 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C+ C C +C A AI I +D +CI C C ACP AI Sbjct: 15 DETLCVGCGKCTEVCWAGAIRIIDKKAV-----------VDFSRCICCTACVRACPKGAI 63 Query: 119 VEGPNFEFATETRQE 133 P + F R + Sbjct: 64 QIIP-YSFPILQRDQ 77 >gi|88603575|ref|YP_503753.1| coenzyme F420 hydrogenase [Methanospirillum hungatei JF-1] gi|88189037|gb|ABD42034.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanospirillum hungatei JF-1] Length = 262 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 27/75 (36%), Gaps = 13/75 (17%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + + C+ C C CP AIT+E G +I CI CG C A Sbjct: 184 IMTKVINQGLCMGCGTCATSCPVFAITMEEGK-----------PNIQRDMCIKCGACYAA 232 Query: 113 CP--VDAIVEGPNFE 125 CP + +E Sbjct: 233 CPRAFFSFDVVNQYE 247 Score = 37.4 bits (85), Expect = 0.67, Method: Composition-based stats. Identities = 11/44 (25%), Positives = 15/44 (34%) Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 A + I+ C+ CG C +CPV AI Sbjct: 168 ASEGSKATSSEACGCDIMTKVINQGLCMGCGTCATSCPVFAITM 211 >gi|118578740|ref|YP_899990.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein [Pelobacter propionicus DSM 2379] gi|118501450|gb|ABK97932.1| pyruvate flavodoxin/ferredoxin oxidoreductase domain protein [Pelobacter propionicus DSM 2379] Length = 1191 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 30/91 (32%), Gaps = 16/91 (17%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP--------------- 84 +TS + A+ E+ CI C +C +CP AI +++ P Sbjct: 674 PTATSQYEKRNIAVDIPVWDEKLCIQCAICSFLCPHAAIRMKAYPESCLADAPATFKSCD 733 Query: 85 -RCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + + C CG C CP Sbjct: 734 AKIAEVKGMKFTLQTAPEDCTGCGACVHNCP 764 >gi|332800412|ref|YP_004461911.1| hydrogenase, Fe-only [Tepidanaerobacter sp. Re1] gi|332698147|gb|AEE92604.1| hydrogenase, Fe-only [Tepidanaerobacter sp. Re1] Length = 659 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 24/70 (34%), Gaps = 3/70 (4%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY---DIDMIKCIYCGLCQEACPV 115 +CI C C +C G + V +I + C+ CG C CP Sbjct: 142 DPNKCILCGDCVRMCEEVQGVGVLGFAYRGSNAKVVPPFNKNISEVNCVDCGQCAAVCPT 201 Query: 116 DAIVEGPNFE 125 A+ + E Sbjct: 202 GALTIASHME 211 >gi|323704269|ref|ZP_08115848.1| hydrogenase, Fe-only [Thermoanaerobacterium xylanolyticum LX-11] gi|323536335|gb|EGB26107.1| hydrogenase, Fe-only [Thermoanaerobacterium xylanolyticum LX-11] Length = 581 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 5/68 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI----DMIKCIYCGLCQEACP 114 +C+ C+ C A C + + + G + V + CI CG C EACP Sbjct: 144 DPNKCVLCRRCVATCN-NVQNVFAIGMVNRGFKTIVAPSFGRGLNESPCISCGQCIEACP 202 Query: 115 VDAIVEGP 122 V AI E Sbjct: 203 VGAIYEKD 210 >gi|323483796|ref|ZP_08089175.1| hypothetical protein HMPREF9474_00924 [Clostridium symbiosum WAL-14163] gi|323402881|gb|EGA95200.1| hypothetical protein HMPREF9474_00924 [Clostridium symbiosum WAL-14163] Length = 387 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 6/56 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 ++C C C CP +AI + + + D KCI CGLC + CP Sbjct: 8 DNKKCSGCSACYNKCPVEAIEMLPDKEG------FLYPEADKGKCIGCGLCVDVCP 57 >gi|310659593|ref|YP_003937314.1| ferredoxin [Clostridium sticklandii DSM 519] gi|322510027|sp|P80168|FER_CLOSD RecName: Full=Ferredoxin gi|308826371|emb|CBH22409.1| Ferredoxin [Clostridium sticklandii] Length = 56 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 23/58 (39%), Positives = 25/58 (43%), Gaps = 11/58 (18%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + CI+C CE CP AIT Y ID CI CG C CPVDA Sbjct: 6 NDSCISCGACEPECPVNAITAGDDK-----------YVIDAATCIDCGACAGVCPVDA 52 >gi|260170367|ref|ZP_05756779.1| flavodoxin [Bacteroides sp. D2] gi|315918726|ref|ZP_07914966.1| flavodoxin [Bacteroides sp. D2] gi|313692601|gb|EFS29436.1| flavodoxin [Bacteroides sp. D2] Length = 267 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 33/96 (34%), Gaps = 8/96 (8%) Query: 29 KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHD 88 K T +E E RCIAC C CP T++ + Sbjct: 157 KKTYTPLLTYEGLPLRSDGTNEVVGNVVLLNTSRCIACGKCMKSCPMNVFTLKDNAKTPL 216 Query: 89 GTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 +D + CI CG C++ CP DA+ F Sbjct: 217 P--------VDEMNCIMCGKCEKECPADAVFINETF 244 >gi|257086845|ref|ZP_05581206.1| formate dehydrogenase [Enterococcus faecalis D6] gi|256994875|gb|EEU82177.1| formate dehydrogenase [Enterococcus faecalis D6] gi|315027368|gb|EFT39300.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX2137] Length = 906 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 3/92 (3%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV 94 F +G P + + + + E+CI C+ C +C + + + Sbjct: 133 FTEGKRMPCHQEDTSNPFFSYDPEKCIMCRRCARVCQLRQGRDVLSIANRGFETKMMPSY 192 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 D C CG C +CP A+ E+ Sbjct: 193 GQAFDQSICESCGNCVSSCPTGALTAKDTKEY 224 >gi|229545925|ref|ZP_04434650.1| NAD-dependent formate dehydrogenase, alpha subunit [Enterococcus faecalis TX1322] gi|256853027|ref|ZP_05558397.1| NAD-dependent formate dehydrogenase [Enterococcus faecalis T8] gi|307291377|ref|ZP_07571261.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX0411] gi|229308993|gb|EEN74980.1| NAD-dependent formate dehydrogenase, alpha subunit [Enterococcus faecalis TX1322] gi|256711486|gb|EEU26524.1| NAD-dependent formate dehydrogenase [Enterococcus faecalis T8] gi|306497608|gb|EFM67141.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX0411] gi|315029988|gb|EFT41920.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX4000] gi|315166636|gb|EFU10653.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX1341] Length = 906 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 3/92 (3%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV 94 F +G P + + + + E+CI C+ C +C + + + Sbjct: 133 FTEGKRMPCHQEDTSNPFFSYDPEKCIMCRRCARVCQLRQGRDVLSIANRGFETKMMPSY 192 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 D C CG C +CP A+ E+ Sbjct: 193 GQAFDQSICESCGNCVSSCPTGALTAKDTKEY 224 >gi|255655141|ref|ZP_05400550.1| electron transport complex protein [Clostridium difficile QCD-23m63] gi|296451129|ref|ZP_06892870.1| electron transport complex protein RnfB [Clostridium difficile NAP08] gi|296880519|ref|ZP_06904481.1| electron transport complex protein RnfB [Clostridium difficile NAP07] gi|296259950|gb|EFH06804.1| electron transport complex protein RnfB [Clostridium difficile NAP08] gi|296428473|gb|EFH14358.1| electron transport complex protein RnfB [Clostridium difficile NAP07] Length = 323 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 23/89 (25%), Gaps = 11/89 (12%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 I P + E CI C +C C AI E Sbjct: 181 KGIIITKPESQEVVVECNSKEFGKAVKEKCTAGCIGCGMCVKACKFDAIIFEDKIA---- 236 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ID KC+ C C CP I Sbjct: 237 -------KIDPNKCVGCMQCVAKCPTKVI 258 Score = 41.2 bits (95), Expect = 0.043, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 5/69 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-----DIDMIKCIYCGLCQEAC 113 EE+C+ C C+ +CP I + + + + + CI CG+C +AC Sbjct: 165 DEEKCVNCGKCKEVCPKGIIITKPESQEVVVECNSKEFGKAVKEKCTAGCIGCGMCVKAC 224 Query: 114 PVDAIVEGP 122 DAI+ Sbjct: 225 KFDAIIFED 233 Score = 40.9 bits (94), Expect = 0.067, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 10/81 (12%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 K T ++ +E C+ C +C+ C AI E + +D Sbjct: 252 KCPTKVISGDITKKKKVTIDQELCVGCTVCKKQCKFDAIEGELKEKHK----------VD 301 Query: 100 MIKCIYCGLCQEACPVDAIVE 120 KC+ C LC E CP AI Sbjct: 302 ADKCVGCHLCMEKCPKKAIKI 322 Score = 38.2 bits (87), Expect = 0.45, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 11/61 (18%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C+ C AI+I G ID KC+ CG C+E CP I+ P Sbjct: 140 CLGLGTCKDACKFDAISIVDGVAV-----------IDEEKCVNCGKCKEVCPKGIIITKP 188 Query: 123 N 123 Sbjct: 189 E 189 >gi|220904372|ref|YP_002479684.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219868671|gb|ACL49006.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 262 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 21/92 (22%), Positives = 30/92 (32%), Gaps = 19/92 (20%) Query: 33 TINYPFEKGSTSPRFRG-EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 T+ P + +RG + P + C C LC CP Q I+ + + G Sbjct: 163 TVTVPGNRP-----YRGLPPVVDIRPKTSQSCTQCMLCATNCPMQVISFDDAAKISQG-- 215 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 CI C C +CP A Sbjct: 216 -----------CIRCCACVRSCPEGAKYFDQE 236 >gi|169247661|gb|ACA51661.1| HydA [Thermoanaerobacterium saccharolyticum] Length = 584 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 5/68 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI----DMIKCIYCGLCQEACP 114 +C+ C+ C A C + + + G + V + CI CG C EACP Sbjct: 147 DPNKCVLCRRCVATCN-NVQNVFAIGMVNRGFKTIVAPSFGRGLNESPCISCGQCIEACP 205 Query: 115 VDAIVEGP 122 V AI E Sbjct: 206 VGAIYEKD 213 >gi|126460291|ref|YP_001056569.1| putative ATPase RIL [Pyrobaculum calidifontis JCM 11548] gi|126250012|gb|ABO09103.1| ABC transporter related [Pyrobaculum calidifontis JCM 11548] Length = 589 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 19/58 (32%), Gaps = 6/58 (10%) Query: 66 CKL-CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C CP + + + I CI CG+C CP DAI Sbjct: 17 CGHECVKYCPVN-----KSGKVVYIDEQLKKAVISEALCIGCGICVHKCPFDAITIVN 69 >gi|126178658|ref|YP_001046623.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Methanoculleus marisnigri JR1] gi|125861452|gb|ABN56641.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Methanoculleus marisnigri JR1] Length = 86 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 10/65 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C C +C +CP I + ++ D+ C CGLC E CP I Sbjct: 30 DPENCTKCGMCALVCPEGCIREKEEG----------TFEPDLNYCKGCGLCAEVCPKKGI 79 Query: 119 VEGPN 123 Sbjct: 80 RMEKE 84 >gi|91788043|ref|YP_548995.1| RnfABCDGE type electron transport complex subunit B [Polaromonas sp. JS666] gi|91697268|gb|ABE44097.1| electron transport complex, RnfABCDGE type, B subunit [Polaromonas sp. JS666] Length = 221 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 10/60 (16%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C LC CP AI G+ + + I+ C C LC CPVD I Sbjct: 84 CIGCTLCIKACPTDAIV---------GSNKMMHTVIEP-YCTGCELCIPVCPVDCISLEN 133 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 14/25 (56%), Positives = 15/25 (60%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 ID CI C LC +ACP DAIV Sbjct: 79 IDEAWCIGCTLCIKACPTDAIVGSN 103 >gi|77176863|gb|ABA64533.1| reductive dehalogenase protein [Dehalococcoides sp. KB1] Length = 500 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 3/65 (4%) Query: 60 EERCIACKLCEAICPAQAI---TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + C C +C +CP+ AI + D T + Y ++ +C+ C C+ CP Sbjct: 389 HKFCETCGICTTVCPSNAIQVGPPQWSNNRWDNTPGYLGYRLNWGRCVLCTNCEAYCPFF 448 Query: 117 AIVEG 121 + G Sbjct: 449 NMTNG 453 >gi|134301106|ref|YP_001114602.1| glycyl-radical activating family protein [Desulfotomaculum reducens MI-1] gi|134053806|gb|ABO51777.1| glycyl-radical enzyme activating protein family [Desulfotomaculum reducens MI-1] Length = 318 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 7/79 (8%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 + G + E+ CI C C +CP Q R++ Sbjct: 41 RCKWCSNPEGLERKYQVMYKEDLCINCGNCTHVCPVQLHYFLDEESPRHKVNRSI----- 95 Query: 100 MIKCIYCGLCQEACPVDAI 118 C+ C C+ ACP A+ Sbjct: 96 --DCVGCRKCETACPKQAL 112 >gi|323704507|ref|ZP_08116085.1| hypothetical protein ThexyDRAFT_0376 [Thermoanaerobacterium xylanolyticum LX-11] gi|323535969|gb|EGB25742.1| hypothetical protein ThexyDRAFT_0376 [Thermoanaerobacterium xylanolyticum LX-11] Length = 364 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 9/63 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +CI C C CP + D+ I+C+ CG C +ACP + Sbjct: 292 NNSKCIQCGQCNESCPM---------SIDIKSAAYYGKDVTDIRCVGCGHCVDACPTKTL 342 Query: 119 VEG 121 Sbjct: 343 SYT 345 >gi|319952505|ref|YP_004163772.1| 4fe-4S ferredoxin iron-sulfur binding domain-containing protein [Cellulophaga algicola DSM 14237] gi|319421165|gb|ADV48274.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Cellulophaga algicola DSM 14237] Length = 526 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 10/67 (14%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R + R NG +CI+C C C + +I C+ CG Sbjct: 435 RFKSRFRITTNG-GQCISCGNCSTYCEQGIDVRAYAQKGE---------NIVRSSCVGCG 484 Query: 108 LCQEACP 114 +C CP Sbjct: 485 VCSAVCP 491 >gi|315174471|gb|EFU18488.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX1346] Length = 906 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 3/92 (3%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV 94 F +G P + + + + E+CI C+ C +C + + + Sbjct: 133 FTEGKRMPCHQEDTSNPFFSYDPEKCIMCRRCARVCQLRQGRDVLSIANRGFETKMMPSY 192 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 D C CG C +CP A+ E+ Sbjct: 193 GQAFDQSICESCGNCVSSCPTGALTAKDTKEY 224 >gi|303248865|ref|ZP_07335114.1| Fe-S cluster domain protein [Desulfovibrio fructosovorans JJ] gi|302489734|gb|EFL49667.1| Fe-S cluster domain protein [Desulfovibrio fructosovorans JJ] Length = 582 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 11/57 (19%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 C C C CP +AI +E+G R + CI CG C ACP A Sbjct: 12 TECQDCYRCLRHCPVKAIQVENG-----------RATVVPELCIACGQCVAACPAHA 57 >gi|291165527|gb|EFE27577.1| ferredoxin [Filifactor alocis ATCC 35896] gi|320120475|gb|ADW16160.1| hypothetical protein HMPREF0389_01715 [Filifactor alocis ATCC 35896] Length = 56 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 11/57 (19%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + CI C CE CP AI+ +Y ID CI CG C CPV A Sbjct: 7 DSCIGCGACEGECPVGAISQGD-----------TQYIIDASACIDCGACAGVCPVGA 52 Score = 33.9 bits (76), Expect = 7.1, Method: Composition-based stats. Identities = 11/22 (50%), Positives = 13/22 (59%) Query: 101 IKCIYCGLCQEACPVDAIVEGP 122 CI CG C+ CPV AI +G Sbjct: 7 DSCIGCGACEGECPVGAISQGD 28 >gi|289424003|ref|ZP_06425792.1| iron hydrogenase 1 [Peptostreptococcus anaerobius 653-L] gi|289155578|gb|EFD04254.1| iron hydrogenase 1 [Peptostreptococcus anaerobius 653-L] Length = 589 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 16/97 (16%), Positives = 30/97 (30%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 PFE + + L++ +C+ C + I + Sbjct: 122 PFEVKYEKKAWNKDFPLQKSFEKCIKCMRCIQVCNKVQSLGIWDVVNSGYRTSVDVSWNR 181 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 I+ C CG C CPV A+ + + ++ Sbjct: 182 TIEQADCSLCGQCITHCPVGALTVRNDIDKVYRAMED 218 >gi|284050506|ref|ZP_06380716.1| bidirectional hydrogenase complex protein HoxU [Arthrospira platensis str. Paraca] Length = 238 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 30/93 (32%), Gaps = 12/93 (12%) Query: 31 KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--QAITIESGPRCHD 88 + T +P + S G RCI C C+ +C A + R Sbjct: 124 RFTYRFPQREVDISHPQFG--------IDHNRCILCTRCQRVCDEIEGAHVWDVAFRGPA 175 Query: 89 GTRRTVRYDID--MIKCIYCGLCQEACPVDAIV 119 T + C CG C +ACP +I Sbjct: 176 AKMITGLNQPWGAVDACTSCGKCVDACPTGSIF 208 >gi|258514877|ref|YP_003191099.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfotomaculum acetoxidans DSM 771] gi|257778582|gb|ACV62476.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfotomaculum acetoxidans DSM 771] Length = 272 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 31/88 (35%), Gaps = 15/88 (17%) Query: 37 PFEKGSTSPRFRGEHALRRY--PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 P+ K T G R P C CK+C ++CP +I E + + Sbjct: 174 PYGKYYTPKNENGVPVDIRKVTPKTNSNCTDCKVCASVCPMGSIDYEDVSKLN------- 226 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C C ++CP +A Sbjct: 227 ------GICIKCCACIKSCPTEAKYFDD 248 >gi|229585583|ref|YP_002844085.1| hypothetical protein M1627_2177 [Sulfolobus islandicus M.16.27] gi|238620546|ref|YP_002915372.1| hypothetical protein M164_2102 [Sulfolobus islandicus M.16.4] gi|228020633|gb|ACP56040.1| conserved hypothetical protein [Sulfolobus islandicus M.16.27] gi|238381616|gb|ACR42704.1| conserved hypothetical protein [Sulfolobus islandicus M.16.4] Length = 619 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 1/58 (1%) Query: 60 EERCIACKLCEAICPAQAITIESGPRC-HDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 CI C C ++CP T + + + D+ C CGLC++ CPV Sbjct: 284 FNGCILCGKCVSVCPYGEQTNDIFHTPLGFYSISYFEKENDLANCHMCGLCEQVCPVR 341 Score = 35.1 bits (79), Expect = 3.3, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 9/46 (19%) Query: 103 CIYCGLCQEACP----VDAIVEGPNFEFATETRQELYYDKERLLNN 144 CI CG C CP + I P + Y++KE L N Sbjct: 287 CILCGKCVSVCPYGEQTNDIFHTP---LGFYSIS--YFEKENDLAN 327 >gi|224539362|ref|ZP_03679901.1| hypothetical protein BACCELL_04267 [Bacteroides cellulosilyticus DSM 14838] gi|224519023|gb|EEF88128.1| hypothetical protein BACCELL_04267 [Bacteroides cellulosilyticus DSM 14838] Length = 285 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 21/63 (33%), Gaps = 8/63 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C C +CP+ + ++ CI CG C CP +I Sbjct: 8 DKSACTQCGKCVKVCPSGVLLKLDRGSVPQVD--------NIGFCIGCGHCAAVCPNGSI 59 Query: 119 VEG 121 V Sbjct: 60 VHS 62 >gi|150401639|ref|YP_001325405.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanococcus aeolicus Nankai-3] gi|150014342|gb|ABR56793.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus aeolicus Nankai-3] Length = 398 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 2/62 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+CI C +C CP AI + + + + + +D KCI C C E CP D I Sbjct: 173 DTEKCIYCSVCAQTCPWNAIFV--NGKMPTKRHKKIDFKLDSEKCIGCIACAEICPGDMI 230 Query: 119 VE 120 Sbjct: 231 KI 232 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID-MIKCIYCGLCQEACPVDAIVE 120 C+ C+LC ICP I+I + + + I M C+ CG+C CPV+AI Sbjct: 106 HCVLCELCVGICPIDIISIPNKIDNPKKEIPSPKEAIVVMDNCVGCGVCPPVCPVEAITM 165 Query: 121 GPN 123 + Sbjct: 166 END 168 Score = 38.9 bits (89), Expect = 0.23, Method: Composition-based stats. Identities = 15/73 (20%), Positives = 22/73 (30%), Gaps = 3/73 (4%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + + CI C C CP A+ + R + C CG C Sbjct: 299 IVINEESKSVKMCIVCGACATTCPTGAL---KVGNIKHNGKDYNRIVFNPSMCNSCGDCV 355 Query: 111 EACPVDAIVEGPN 123 CP+D + Sbjct: 356 GVCPMDTLELVKE 368 Score = 38.9 bits (89), Expect = 0.26, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 11/60 (18%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C+ C +C +CP +AIT+E+ +D KCIYC +C + CP +AI Sbjct: 145 MDNCVGCGVCPPVCPVEAITMENDRAV-----------VDTEKCIYCSVCAQTCPWNAIF 193 >gi|110805601|ref|YP_689121.1| electron transport complex protein RnfB [Shigella flexneri 5 str. 8401] gi|110615149|gb|ABF03816.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401] Length = 192 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 10/76 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C C CP AI + V + + C LC + CP I Sbjct: 113 DENNCIGCTKCIQACPVDAIVGAT----------RVMHTVMSDLCTGFNLCVDPCPTHCI 162 Query: 119 VEGPNFEFATETRQEL 134 P E + +L Sbjct: 163 SLQPVAETPDSWKWDL 178 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C C +ACPVDAI Sbjct: 112 IDENNCIGCTKCIQACPVDAI 132 >gi|83630912|gb|ABC26909.1| HoxU [Arthrospira platensis FACHB341] gi|291570289|dbj|BAI92561.1| diaphorase subunit of the bidirectional hydrogenase [Arthrospira platensis NIES-39] Length = 243 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 30/93 (32%), Gaps = 12/93 (12%) Query: 31 KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--QAITIESGPRCHD 88 + T +P + S G RCI C C+ +C A + R Sbjct: 129 RFTYRFPQREVDISHPQFG--------IDHNRCILCTRCQRVCDEIEGAHVWDVAFRGPA 180 Query: 89 GTRRTVRYDID--MIKCIYCGLCQEACPVDAIV 119 T + C CG C +ACP +I Sbjct: 181 AKMITGLNQPWGAVDACTSCGKCVDACPTGSIF 213 >gi|39933211|ref|NP_945487.1| hydrogenase gamma-fused hydrogenase large and small subunit [Rhodopseudomonas palustris CGA009] gi|39652836|emb|CAE25578.1| hydrogenase gamma-fused hydrogenase large and small subunit [Rhodopseudomonas palustris CGA009] Length = 619 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 35/118 (29%), Gaps = 14/118 (11%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 L++ L FF + T P + S S RC+ C+ C AI Sbjct: 131 LQDLAQFVGLQQNRFFDRERTEARPVDHSSPS-----------MVRDMRRCVRCQRCVAI 179 Query: 73 CPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 C R D C+ CG C CP A+ E + A Sbjct: 180 CRYHQKIDALAIEGSGLERMVALRDADGYPNSVCVSCGQCVLVCPTGALGERDETDRA 237 >gi|148262232|ref|YP_001228938.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Geobacter uraniireducens Rf4] gi|148265604|ref|YP_001232310.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Geobacter uraniireducens Rf4] gi|146395732|gb|ABQ24365.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Geobacter uraniireducens Rf4] gi|146399104|gb|ABQ27737.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Geobacter uraniireducens Rf4] Length = 665 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 7/83 (8%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ C+AC C+ +CP A+ E R +G V ++ C CG CQ CP ++ Sbjct: 590 NEKNCVACFYCKKVCPYGAVE-EKEIRDRNGNLIRVVAYVNPGVCGGCGTCQATCPSKSV 648 Query: 119 VEGPNFEFATETRQELYYDKERL 141 E T +++ E L Sbjct: 649 ------ELDGYTDEQIVAMIEAL 665 Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 25/85 (29%), Gaps = 13/85 (15%) Query: 59 GEERCIACKLCEAICP----AQAITIESGPRC----HDGTRRTVRYDIDMIKCI-----Y 105 +C C +C A CP A G R ID C Sbjct: 239 DMAKCTGCGICMAKCPQKKIPNAFDRNMGMRPAIYVPFPQAVPNTPVIDRENCTWFKTGK 298 Query: 106 CGLCQEACPVDAIVEGPNFEFATET 130 CG+CQ+ C A+ E E Sbjct: 299 CGVCQKVCGPGAVDYTQEDELIVEK 323 >gi|323703027|ref|ZP_08114683.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Desulfotomaculum nigrificans DSM 574] gi|323532040|gb|EGB21923.1| FAD-dependent pyridine nucleotide-disulfide oxidoreductase [Desulfotomaculum nigrificans DSM 574] Length = 1027 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 19/66 (28%), Gaps = 5/66 (7%) Query: 59 GEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 +CI C C C A+ + + + C CG C CP Sbjct: 618 DPNKCILCGNCVRFCHEVVGVGALGFVNRGSDTVVLPSLKKP-LTETACNSCGQCVAVCP 676 Query: 115 VDAIVE 120 A+ Sbjct: 677 TGALTF 682 Score = 37.8 bits (86), Expect = 0.58, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 24/87 (27%), Gaps = 10/87 (11%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKL-----C-----EAICPAQAITIESGPRC 86 P + F ERC++C C QA + G R Sbjct: 546 PDVRKVNFDEFELGFTPEMAKKEAERCLSCGCLDVFDCKLREYATELKVQANRLGFGERN 605 Query: 87 HDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + D KCI CG C C Sbjct: 606 YPVFSDHPEIIRDPNKCILCGNCVRFC 632 >gi|323478149|gb|ADX83387.1| 4Fe-4S ferredoxin, iron-sulfur binding domain [Sulfolobus islandicus HVE10/4] Length = 619 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 1/58 (1%) Query: 60 EERCIACKLCEAICPAQAITIESGPRC-HDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 CI C C ++CP T + + + D+ C CGLC++ CPV Sbjct: 284 FNGCILCGKCVSVCPYGEQTNDIFHTPLGFYSISYFEKENDLANCHMCGLCEQVCPVR 341 Score = 35.1 bits (79), Expect = 3.3, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 9/46 (19%) Query: 103 CIYCGLCQEACP----VDAIVEGPNFEFATETRQELYYDKERLLNN 144 CI CG C CP + I P + Y++KE L N Sbjct: 287 CILCGKCVSVCPYGEQTNDIFHTP---LGFYSIS--YFEKENDLAN 327 >gi|315150636|gb|EFT94652.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX0012] Length = 906 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 3/92 (3%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV 94 F +G P + + + + E+CI C+ C +C + + + Sbjct: 133 FTEGKRMPCHQEDTSNPFFSYDPEKCIMCRRCARVCQLRQGRDVLSIANRGFETKMMPSY 192 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 D C CG C +CP A+ E+ Sbjct: 193 GQAFDQSICESCGNCVSSCPTGALTAKDTKEY 224 >gi|313672580|ref|YP_004050691.1| 4fe-4S ferredoxin [Calditerrivibrio nitroreducens DSM 19672] gi|312939336|gb|ADR18528.1| 4Fe-4S ferredoxin [Calditerrivibrio nitroreducens DSM 19672] Length = 56 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 23/56 (41%), Positives = 24/56 (42%), Gaps = 11/56 (19%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C CE CP AI+ G R ID C CG C E CPVDAI Sbjct: 9 CTNCGACEDECPVGAISEADGKRV-----------IDADTCTDCGACAEVCPVDAI 53 >gi|312876536|ref|ZP_07736519.1| protein of unknown function DUF362 [Caldicellulosiruptor lactoaceticus 6A] gi|311796747|gb|EFR13093.1| protein of unknown function DUF362 [Caldicellulosiruptor lactoaceticus 6A] Length = 375 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 11/62 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C C CPAQAI ++S +D+ KCI C C E CP AI Sbjct: 314 DRNICIGCAECFNACPAQAIEMKSRKAY-----------VDLKKCIRCYCCHELCPAKAI 362 Query: 119 VE 120 Sbjct: 363 KI 364 >gi|312879724|ref|ZP_07739524.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Aminomonas paucivorans DSM 12260] gi|310783015|gb|EFQ23413.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Aminomonas paucivorans DSM 12260] Length = 375 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 22/64 (34%), Gaps = 10/64 (15%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C+ C C A C A+T+ ID +C+ CG C +C A Sbjct: 193 KHCVGCGACVAHCAHGAVTLGPDRIA----------RIDEERCVGCGQCIVSCAFGAAQV 242 Query: 121 GPNF 124 Sbjct: 243 VWEH 246 >gi|303244452|ref|ZP_07330787.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanothermococcus okinawensis IH1] gi|302485150|gb|EFL48079.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanothermococcus okinawensis IH1] Length = 132 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 27/67 (40%), Gaps = 10/67 (14%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + +++CI C C CP +AIT+ + D +CI C C C Sbjct: 73 KMIQKNDDKCIDCGACLVHCPVKAITMNED----------FKVIFDENECIGCKNCANVC 122 Query: 114 PVDAIVE 120 PV AI Sbjct: 123 PVKAINI 129 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 12/33 (36%), Positives = 14/33 (42%) Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 + KCI CG C CPV AI +F Sbjct: 71 VPKMIQKNDDKCIDCGACLVHCPVKAITMNEDF 103 >gi|257089784|ref|ZP_05584145.1| NAD-dependent formate dehydrogenase alpha subunit [Enterococcus faecalis CH188] gi|256998596|gb|EEU85116.1| NAD-dependent formate dehydrogenase alpha subunit [Enterococcus faecalis CH188] Length = 906 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 3/92 (3%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV 94 F +G P + + + + E+CI C+ C +C + + + Sbjct: 133 FTEGKRMPCHQEDTSNPFFSYDPEKCIMCRRCARVCQLRQGRDVLSIANRGFETKMMPSY 192 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 D C CG C +CP A+ E+ Sbjct: 193 GQAFDQSICESCGNCVSSCPTGALTAKDTKEY 224 >gi|225568763|ref|ZP_03777788.1| hypothetical protein CLOHYLEM_04842 [Clostridium hylemonae DSM 15053] gi|225162262|gb|EEG74881.1| hypothetical protein CLOHYLEM_04842 [Clostridium hylemonae DSM 15053] Length = 203 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 18/81 (22%) Query: 44 SPRFRGEHAL------RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 SP FR L + ++C C +C+ ICP Q I R+ + Sbjct: 130 SPIFRESFVLGKQGRITKGYRITDQCTGCGVCQNICPQQCI------------RKGTPCE 177 Query: 98 IDMIKCIYCGLCQEACPVDAI 118 I C++CGLC E CPV A+ Sbjct: 178 IAQEHCLHCGLCYENCPVRAV 198 Score = 35.5 bits (80), Expect = 2.3, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 32/98 (32%), Gaps = 7/98 (7%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEE------RCIACKLCEAICPAQAITIESGPRCHDGTR 91 ++ F A++ G+ CI E ++ R Sbjct: 85 EQREKIDRIFEENPAMKDVYPGDSRYILEAFCIEDGELEFFDLGRSPIFRESFVLGKQGR 144 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 T Y I +C CG+CQ CP I +G E A E Sbjct: 145 ITKGYRI-TDQCTGCGVCQNICPQQCIRKGTPCEIAQE 181 >gi|237809075|ref|YP_002893515.1| electron transport complex, RnfABCDGE type, C subunit [Tolumonas auensis DSM 9187] gi|237501336|gb|ACQ93929.1| electron transport complex, RnfABCDGE type, C subunit [Tolumonas auensis DSM 9187] Length = 483 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 2/64 (3%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C C CP +T ++ ++ C+ CG C CP AI Sbjct: 360 CVRCGRCIGACPMS-LTPLDMVAELKVDNFGKAAEMGVMDCLLCGSCAYVCP-AAIPLTQ 417 Query: 123 NFEF 126 F++ Sbjct: 418 YFDW 421 >gi|209525020|ref|ZP_03273564.1| ferredoxin [Arthrospira maxima CS-328] gi|209494429|gb|EDZ94740.1| ferredoxin [Arthrospira maxima CS-328] Length = 238 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 30/93 (32%), Gaps = 12/93 (12%) Query: 31 KTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--QAITIESGPRCHD 88 + T +P + S G RCI C C+ +C A + R Sbjct: 124 RFTYRFPQREVDISHPQFG--------IDHNRCILCTRCQRVCDEIEGAHVWDVAFRGPA 175 Query: 89 GTRRTVRYDID--MIKCIYCGLCQEACPVDAIV 119 T + C CG C +ACP +I Sbjct: 176 AKMITGLNQPWGAVDACTSCGKCVDACPTGSIF 208 >gi|48995937|gb|AAT48558.1| putative reductive dehalogenase [Dehalococcoides sp. BAV1] Length = 496 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 3/65 (4%) Query: 60 EERCIACKLCEAICPAQAIT---IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + C C +C +CP+ AI + D T + Y ++ +C+ C C+ CP Sbjct: 385 HKFCETCGICTTVCPSNAIQVGPPQWSNNRWDNTPGYLGYRLNWGRCVLCTNCETYCPFF 444 Query: 117 AIVEG 121 + G Sbjct: 445 NMTNG 449 >gi|46581692|ref|YP_012500.1| glutamate synthase, iron-sulfur cluster-binding subunit [Desulfovibrio vulgaris str. Hildenborough] gi|46451115|gb|AAS97760.1| glutamate synthase, iron-sulfur cluster-binding subunit, putative [Desulfovibrio vulgaris str. Hildenborough] gi|311235328|gb|ADP88182.1| ferredoxin-dependent glutamate synthase [Desulfovibrio vulgaris RCH1] Length = 544 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 27/87 (31%), Gaps = 15/87 (17%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPR---------CHDGTRRTVRYDIDMIK-- 102 + C C C A+CP AI + + + Y + Sbjct: 19 WQVEWDRATCALCGRCTAVCPVNAIELGVHRQRIVDAPVGLAKRPSNAHTVYHGVRQRTD 78 Query: 103 ----CIYCGLCQEACPVDAIVEGPNFE 125 C+ CG+C CP +AI E Sbjct: 79 AAYACVGCGMCTMVCPNNAIRPVHQAE 105 >gi|319936875|ref|ZP_08011287.1| hypothetical protein HMPREF9488_02121 [Coprobacillus sp. 29_1] gi|319808143|gb|EFW04715.1| hypothetical protein HMPREF9488_02121 [Coprobacillus sp. 29_1] Length = 248 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 36/111 (32%), Gaps = 17/111 (15%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 L E G + K ++ P ++ H + +P C C LC Sbjct: 133 LNEMAGFMEEVKKRLKKQAISVYVPGNNP-----YKEYHVIPLHPKASSTCHQCGLCARR 187 Query: 73 CPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 CP QAI +++ +I +CI C C CP A Sbjct: 188 CPVQAIPLDN------------PQEIMKGQCISCMRCVHICPQQARKCSSI 226 >gi|317484569|ref|ZP_07943475.1| NIL domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316924168|gb|EFV45348.1| NIL domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 149 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 9/70 (12%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 +R + E++C+ C +C A+CP+ A+T++ R + KC C C Sbjct: 79 PVAQRIWHNEDKCMQCGMCTALCPSSALTVDIKTRLLAFDK---------EKCTVCARCI 129 Query: 111 EACPVDAIVE 120 CPV A+ Sbjct: 130 RICPVGAMQM 139 >gi|315580792|gb|EFU92983.1| 4Fe-4S binding domain protein [Enterococcus faecalis TX0309A] Length = 149 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 15/69 (21%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + RY +++CI C C+ +C + + + ++CI CG C+ A Sbjct: 93 IFRYRLDKDKCINCGKCKKVCQMN---------------KDSVENCNHLECIRCGRCKNA 137 Query: 113 CPVDAIVEG 121 CPVDAI G Sbjct: 138 CPVDAISYG 146 >gi|315170080|gb|EFU14097.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX1342] Length = 906 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 3/92 (3%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV 94 F +G P + + + + E+CI C+ C +C + + + Sbjct: 133 FTEGKRMPCHQEDTSNPFFSYDPEKCIMCRRCARVCQLRQGRDVLSIANRGFETKMMPSY 192 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 D C CG C +CP A+ E+ Sbjct: 193 GQAFDQSICESCGNCVSSCPTGALTAKDTKEY 224 >gi|315147887|gb|EFT91903.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX4244] Length = 906 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 3/92 (3%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV 94 F +G P + + + + E+CI C+ C +C + + + Sbjct: 133 FTEGKRMPCHQEDTSNPFFSYDPEKCIMCRRCARVCQLRQGRDVLSIANRGFETKMMPSY 192 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 D C CG C +CP A+ E+ Sbjct: 193 GQAFDQSICESCGNCVSSCPTGALTAKDTKEY 224 >gi|312900656|ref|ZP_07759953.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX0470] gi|311292137|gb|EFQ70693.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX0470] Length = 906 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 3/92 (3%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV 94 F +G P + + + + E+CI C+ C +C + + + Sbjct: 133 FTEGKRMPCHQEDTSNPFFSYDPEKCIMCRRCARVCQLRQGRDVLSIANRGFETKMMPSY 192 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 D C CG C +CP A+ E+ Sbjct: 193 GQAFDQSICESCGNCVSSCPTGALTAKDTKEY 224 >gi|307288114|ref|ZP_07568124.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX0109] gi|306500850|gb|EFM70168.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX0109] gi|315164270|gb|EFU08287.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX1302] Length = 906 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 3/92 (3%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV 94 F +G P + + + + E+CI C+ C +C + + + Sbjct: 133 FTEGKRMPCHQEDTSNPFFSYDPEKCIMCRRCARVCQLRQGRDVLSIANRGFETKMMPSY 192 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 D C CG C +CP A+ E+ Sbjct: 193 GQAFDQSICESCGNCVSSCPTGALTAKDTKEY 224 >gi|290559230|gb|EFD92577.1| ABC transporter related protein [Candidatus Parvarchaeum acidophilus ARMAN-5] Length = 482 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 26/70 (37%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 +R E C A C IC + G + R + I CI CG+C + Sbjct: 1 MRVAVIKESECEAPDNCNDICAEVCPRVREGAKETVYARENGQAAITESLCISCGICVKR 60 Query: 113 CPVDAIVEGP 122 CP DAI Sbjct: 61 CPFDAIKIIN 70 >gi|257466640|ref|ZP_05630951.1| nitrogen fixation iron-sulphur protein RNFC [Fusobacterium gonidiaformans ATCC 25563] gi|315917794|ref|ZP_07914034.1| nitrogen fixation iron-sulfur protein RNFC [Fusobacterium gonidiaformans ATCC 25563] gi|313691669|gb|EFS28504.1| nitrogen fixation iron-sulfur protein RNFC [Fusobacterium gonidiaformans ATCC 25563] Length = 436 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 6/71 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP-- 114 P + CI C C ++CP + R + + ++ CI CG C CP Sbjct: 359 PYKPKACIGCGKCVSVCPMS-LEPVMFARLAAFQQWEGLQNYHLMDCIECGSCAFICPAN 417 Query: 115 ---VDAIVEGP 122 +AI G Sbjct: 418 RPLTEAIKIGK 428 >gi|256962024|ref|ZP_05566195.1| formate dehydrogenase [Enterococcus faecalis Merz96] gi|293383047|ref|ZP_06628965.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis R712] gi|293388208|ref|ZP_06632729.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis S613] gi|312907364|ref|ZP_07766355.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis DAPTO 512] gi|312909980|ref|ZP_07768828.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis DAPTO 516] gi|256952520|gb|EEU69152.1| formate dehydrogenase [Enterococcus faecalis Merz96] gi|291079712|gb|EFE17076.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis R712] gi|291082392|gb|EFE19355.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis S613] gi|310626392|gb|EFQ09675.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis DAPTO 512] gi|311289938|gb|EFQ68494.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis DAPTO 516] Length = 906 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 3/92 (3%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV 94 F +G P + + + + E+CI C+ C +C + + + Sbjct: 133 FTEGKRMPCHQEDTSNPFFSYDPEKCIMCRRCARVCQLRQGRDVLSIANRGFETKMMPSY 192 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 D C CG C +CP A+ E+ Sbjct: 193 GQAFDQSICESCGNCVSSCPTGALTAKDTKEY 224 >gi|297544743|ref|YP_003677045.1| glutamate synthase [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296842518|gb|ADH61034.1| Glutamate synthase (NADPH) [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 501 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 17/106 (16%), Positives = 40/106 (37%), Gaps = 14/106 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++CI CK+C C + + + + + + C+ C C CP A+ Sbjct: 15 DYDKCINCKVCMRQCSFEVHSYDE---------HLDKMVSNDMNCVNCQRCVVLCPTQAL 65 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWES--EIVRNIVTDSPY 162 + R+ + + + + + E+ ++ ++ D PY Sbjct: 66 TIIKH---PQTFREHANWTYDAIRDIYKQAETGGVLLSSMGNDRPY 108 >gi|322420297|ref|YP_004199520.1| hypothetical protein GM18_2798 [Geobacter sp. M18] gi|320126684|gb|ADW14244.1| protein of unknown function DUF162 [Geobacter sp. M18] Length = 711 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 25/106 (23%), Positives = 31/106 (29%), Gaps = 14/106 (13%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGTRRTVRYDI 98 R E A +CI C C +CP GT T +D Sbjct: 286 LMDNQRTEMAKDPKFKQALQCIRCGSCLNVCPIFRLVGGHVFGKVYTGGIGTILTAWFDE 345 Query: 99 ------DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 CI CG C + CP E E R+ L +K Sbjct: 346 LKKSEEIQGLCIQCGNCTQVCPGKL----DIPEMILEIRRRLVLEK 387 >gi|237795239|ref|YP_002862791.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum Ba4 str. 657] gi|229260949|gb|ACQ51982.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum Ba4 str. 657] Length = 574 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 11/77 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + C C C CP +AI ++ +I +CI CG C Sbjct: 1 MNYIDISGLNCKNCYKCLRACPVKAIKFKNEKA-----------EIVEERCISCGRCLVI 49 Query: 113 CPVDAIVEGPNFEFATE 129 CP +A + P+ ++ + Sbjct: 50 CPQNAKKDKPDIKYVKD 66 Score = 33.5 bits (75), Expect = 8.9, Method: Composition-based stats. Identities = 13/35 (37%), Positives = 14/35 (40%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 DI + C C C ACPV AI E R Sbjct: 5 DISGLNCKNCYKCLRACPVKAIKFKNEKAEIVEER 39 >gi|227357618|ref|ZP_03841971.1| possible [formate-C-acetyltransferase]-activating enzyme [Proteus mirabilis ATCC 29906] gi|227162328|gb|EEI47332.1| possible [formate-C-acetyltransferase]-activating enzyme [Proteus mirabilis ATCC 29906] Length = 316 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 15/74 (20%), Positives = 26/74 (35%), Gaps = 5/74 (6%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 + G + + ++C+ C C +CPA + + + R D Sbjct: 37 RCPWCSNPEGLSSEFQVMYSRDKCVDCGKCVDVCPAGVHYMTTNEQGQQVHRVDRAVD-- 94 Query: 100 MIKCIYCGLCQEAC 113 CI C C+E C Sbjct: 95 ---CIGCRQCEEVC 105 Score = 34.7 bits (78), Expect = 4.0, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 13/48 (27%) Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +G + KC+ CG C + CP N Sbjct: 33 GCNIRCPWCSNPEGLSSEFQVMYSRDKCVDCGKCVDVCPAGVHYMTTN 80 >gi|227498571|ref|ZP_03928715.1| nitroreductase [Acidaminococcus sp. D21] gi|226904027|gb|EEH89945.1| nitroreductase [Acidaminococcus sp. D21] Length = 270 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 10/63 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E+C C C +CP+ + +++ I+ + C+ CG C CP A+ Sbjct: 8 DKEKCTRCGTCAKVCPSCILEMDTEGPV----------CINDLSCMSCGHCVAVCPTGAL 57 Query: 119 VEG 121 Sbjct: 58 DNS 60 Score = 35.1 bits (79), Expect = 3.1, Method: Composition-based stats. Identities = 9/27 (33%), Positives = 11/27 (40%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPN 123 ID KC CG C + CP + Sbjct: 6 TIDKEKCTRCGTCAKVCPSCILEMDTE 32 >gi|160887227|ref|ZP_02068230.1| hypothetical protein BACOVA_05244 [Bacteroides ovatus ATCC 8483] gi|156107638|gb|EDO09383.1| hypothetical protein BACOVA_05244 [Bacteroides ovatus ATCC 8483] Length = 266 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 12/77 (15%) Query: 51 HALRRYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGT--------RRTVRYDI 98 + + +CI C C A CP ++ I + P+ + R Sbjct: 144 ERWKYWMEEMSKCIKCYACRAACPLCYCSRCIVEVNCPQWVQPWSAPLTNMEWQINRVMH 203 Query: 99 DMIKCIYCGLCQEACPV 115 +CI CG C++ACPV Sbjct: 204 MAGRCIGCGACKQACPV 220 >gi|94269861|ref|ZP_01291586.1| 4Fe-4S ferredoxin, iron-sulfur binding:Zn-finger, C2H2 type [delta proteobacterium MLMS-1] gi|93451045|gb|EAT02004.1| 4Fe-4S ferredoxin, iron-sulfur binding:Zn-finger, C2H2 type [delta proteobacterium MLMS-1] Length = 684 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 9/60 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ C CK+C ICP +AI + + I+ + C CG C ACP+ AI Sbjct: 615 DQQCCTGCKICRNICPYRAIGFDEEKQVAV---------INRVLCRGCGTCAAACPLTAI 665 Score = 34.7 bits (78), Expect = 4.4, Method: Composition-based stats. Identities = 10/17 (58%), Positives = 13/17 (76%) Query: 98 IDMIKCIYCGLCQEACP 114 +D+ +CI CG C EACP Sbjct: 240 VDLGRCIGCGECIEACP 256 Score = 34.3 bits (77), Expect = 6.1, Method: Composition-based stats. Identities = 23/87 (26%), Positives = 27/87 (31%), Gaps = 10/87 (11%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV--- 94 E F + R RCI C C CPA+ +E G Sbjct: 220 EEVSGFLGNFLVKVRQRPRFVDLGRCIGCGECIEACPAERAGVEGGKCKAIDFAVPGALP 279 Query: 95 -RYDIDMIKCIY------CGLCQEACP 114 ID C+ C LCQ ACP Sbjct: 280 NVPKIDPDLCLRGGSDPECRLCQAACP 306 >gi|29375957|ref|NP_815111.1| NAD-dependent formate dehydrogenase, alpha subunit [Enterococcus faecalis V583] gi|227518656|ref|ZP_03948705.1| NAD-dependent formate dehydrogenase, alpha subunit [Enterococcus faecalis TX0104] gi|227553187|ref|ZP_03983236.1| NAD-dependent formate dehydrogenase, alpha subunit [Enterococcus faecalis HH22] gi|256965223|ref|ZP_05569394.1| formate dehydrogenase [Enterococcus faecalis HIP11704] gi|257419202|ref|ZP_05596196.1| formate dehydrogenase [Enterococcus faecalis T11] gi|307273326|ref|ZP_07554571.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX0855] gi|29343419|gb|AAO81181.1| NAD-dependent formate dehydrogenase, alpha subunit [Enterococcus faecalis V583] gi|227073913|gb|EEI11876.1| NAD-dependent formate dehydrogenase, alpha subunit [Enterococcus faecalis TX0104] gi|227177679|gb|EEI58651.1| NAD-dependent formate dehydrogenase, alpha subunit [Enterococcus faecalis HH22] gi|256955719|gb|EEU72351.1| formate dehydrogenase [Enterococcus faecalis HIP11704] gi|257161030|gb|EEU90990.1| formate dehydrogenase [Enterococcus faecalis T11] gi|306509853|gb|EFM78878.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX0855] gi|315575554|gb|EFU87745.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX0309B] gi|315580004|gb|EFU92195.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX0309A] Length = 906 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 3/92 (3%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV 94 F +G P + + + + E+CI C+ C +C + + + Sbjct: 133 FTEGKRMPCHQEDTSNPFFSYDPEKCIMCRRCARVCQLRQGRDVLSIANRGFETKMMPSY 192 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 D C CG C +CP A+ E+ Sbjct: 193 GQAFDQSICESCGNCVSSCPTGALTAKDTKEY 224 >gi|327400690|ref|YP_004341529.1| pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta [Archaeoglobus veneficus SNP6] gi|327316198|gb|AEA46814.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Archaeoglobus veneficus SNP6] Length = 160 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 10/69 (14%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + E RC+ C +C CP + + ++ D C CG+C E Sbjct: 97 VCPQETQCEIRCVECGICWMYCPEGCMVLNEEG----------FFEPDYDYCKGCGICAE 146 Query: 112 ACPVDAIVE 120 CP+ AI Sbjct: 147 VCPLGAITM 155 >gi|307243124|ref|ZP_07525298.1| ferredoxin [Peptostreptococcus stomatis DSM 17678] gi|306493484|gb|EFM65463.1| ferredoxin [Peptostreptococcus stomatis DSM 17678] Length = 287 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 5/69 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-----DIDMIKCIYCGLCQEAC 113 EE+C+ C C ICP I + + ++ + D + CI CG+C + C Sbjct: 165 DEEKCVNCGKCIDICPKGLIERKPANKAVTVQCKSNDFGKKVKDNCSVGCIGCGICFKEC 224 Query: 114 PVDAIVEGP 122 P DAI+ Sbjct: 225 PFDAIIFED 233 Score = 40.9 bits (94), Expect = 0.067, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 25/82 (30%), Gaps = 11/82 (13%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P K T + + N CI C +C CP AI E Sbjct: 188 PANKAVTVQCKSNDFGKKVKDNCSVGCIGCGICFKECPFDAIIFEDKLA----------- 236 Query: 97 DIDMIKCIYCGLCQEACPVDAI 118 ID KC C C CP I Sbjct: 237 RIDYDKCKQCNKCAMKCPTKVI 258 >gi|317133642|ref|YP_004092956.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Ethanoligenens harbinense YUAN-3] gi|315471621|gb|ADU28225.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Ethanoligenens harbinense YUAN-3] Length = 1180 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 32/101 (31%), Gaps = 17/101 (16%) Query: 28 FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI-----ES 82 FK + +P +GS + RG E CI C C +CP I + Sbjct: 664 FKGREDGTFP--QGSAAYEKRGIAVDVPEWQ-PENCIQCNFCSYVCPHAVIRPFVLTADE 720 Query: 83 GPRCHDGTRRT-------VRYDIDMI--KCIYCGLCQEACP 114 + + + I+ C CG C CP Sbjct: 721 AEKAPASMKHKPATALAGFEFSINPSVLDCTGCGSCANVCP 761 >gi|282857225|ref|ZP_06266469.1| ferredoxin [Pyramidobacter piscolens W5455] gi|282585011|gb|EFB90335.1| ferredoxin [Pyramidobacter piscolens W5455] Length = 279 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 22/84 (26%), Positives = 30/84 (35%), Gaps = 11/84 (13%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 P +K CI C++C +CP Q I+++ Sbjct: 191 MVPKKKMVHVACSNPMPGAFVRKVCTVGCIGCQMCVKVCPKQTISMKGALAV-------- 242 Query: 95 RYDIDMIKCIYCGLCQEACPVDAI 118 ID C+ CGLC CPV AI Sbjct: 243 ---IDPSNCVNCGLCAAKCPVHAI 263 Score = 41.6 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 13/67 (19%), Positives = 23/67 (34%), Gaps = 5/67 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEAC 113 ++C+ C+ C CP I + + + + CI C +C + C Sbjct: 170 DRDKCVGCQACVEACPRGIIAMVPKKKMVHVACSNPMPGAFVRKVCTVGCIGCQMCVKVC 229 Query: 114 PVDAIVE 120 P I Sbjct: 230 PKQTISM 236 Score = 38.9 bits (89), Expect = 0.26, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 22/60 (36%), Gaps = 11/60 (18%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C C AI + +G +D KC+ C C EACP I P Sbjct: 145 CMGFGTCVKACKFDAIHVING-----------VAKVDRDKCVGCQACVEACPRGIIAMVP 193 >gi|257414386|ref|ZP_04746152.2| iron-sulfur cluster-binding protein [Roseburia intestinalis L1-82] gi|257200236|gb|EEU98520.1| iron-sulfur cluster-binding protein [Roseburia intestinalis L1-82] Length = 302 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 21/61 (34%), Gaps = 15/61 (24%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RCI C C+ C ++ CI CG C +ACP DAI Sbjct: 239 ENSRCIGCGQCQKACKMDVDVCKTPDHPE---------------CIRCGACIKACPKDAI 283 Query: 119 V 119 Sbjct: 284 H 284 >gi|224369308|ref|YP_002603472.1| HdrL1 [Desulfobacterium autotrophicum HRM2] gi|223692025|gb|ACN15308.1| HdrL1 [Desulfobacterium autotrophicum HRM2] Length = 1482 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 6/62 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C +C +C +ICP A + + R + +I+ + C CGLC +C A+ Sbjct: 1408 DPMVCSSCGVCVSICPYSAPSFATEGRFKG------KAEINPVLCKGCGLCVASCRSGAL 1461 Query: 119 VE 120 Sbjct: 1462 HL 1463 Score = 38.5 bits (88), Expect = 0.28, Method: Composition-based stats. Identities = 16/34 (47%), Positives = 16/34 (47%), Gaps = 3/34 (8%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 ID KC CG C EACPV FE TR Sbjct: 104 IDTAKCTGCGECAEACPVT---LPSIFEQGLTTR 134 >gi|222100041|ref|YP_002534609.1| Fe-hydrogenase alpha subunit [Thermotoga neapolitana DSM 4359] gi|221572431|gb|ACM23243.1| Fe-hydrogenase alpha subunit [Thermotoga neapolitana DSM 4359] Length = 645 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 3/70 (4%) Query: 59 GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQEACPV 115 +CI C C +C Q + + + + T ++ + +C++CG C CP Sbjct: 139 DTSKCILCGDCVRVCEEVQGVGVIEFAKRGFESVVTTAFNTPLAETECVFCGQCVAYCPT 198 Query: 116 DAIVEGPNFE 125 A+ + + Sbjct: 199 GALSIRNDID 208 >gi|167770888|ref|ZP_02442941.1| hypothetical protein ANACOL_02241 [Anaerotruncus colihominis DSM 17241] gi|167666928|gb|EDS11058.1| hypothetical protein ANACOL_02241 [Anaerotruncus colihominis DSM 17241] Length = 437 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 11/59 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 ++C C C CP +AI + G I +CI CG C CP A Sbjct: 13 DRDKCHGCINCVKRCPTEAIRVRGGKA-----------KIIKERCIDCGECIRVCPHHA 60 >gi|163644682|gb|ABY28334.1| putative reductive dehalogenase [Dehalococcoides sp. enrichment culture clone RC71(RCRdA15)] Length = 472 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 27/83 (32%), Gaps = 17/83 (20%) Query: 60 EERCIACKLCEAICPAQAITIESGP-----RCHDGTRRTVRYDIDMIKCI---------- 104 + C CK C +CP+ AI IE P Y ++ C Sbjct: 333 WKFCQTCKKCAEMCPSGAIPIEGDPSYTIEHPESNGYGLKSYHVNYDNCHPYRGNPGSVV 392 Query: 105 --YCGLCQEACPVDAIVEGPNFE 125 CG+CQ C + G E Sbjct: 393 NGGCGICQNVCVFSKMEGGNIHE 415 >gi|15791257|ref|NP_281081.1| ferredoxin [Halobacterium sp. NRC-1] gi|169237015|ref|YP_001690215.1| ferredoxin (3Fe-4S)(4Fe-4S) [Halobacterium salinarum R1] gi|10581890|gb|AAG20561.1| ferredoxin [Halobacterium sp. NRC-1] gi|167728081|emb|CAP14869.1| ferredoxin (3Fe-4S)(4Fe-4S) [Halobacterium salinarum R1] Length = 106 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 2/78 (2%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100 G + + C+A C CP P + R+ + Sbjct: 24 GPVEEPEKLGVHGTHVAVDFDICLADGACLEDCPVDVFEWVETPDHPESERKADPAN--E 81 Query: 101 IKCIYCGLCQEACPVDAI 118 +CI C LC + CPVDAI Sbjct: 82 TQCIDCMLCVDVCPVDAI 99 >gi|167036651|ref|YP_001664229.1| hydrogenase with PAS/PAC sensor [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|166855485|gb|ABY93893.1| hydrogenase with PAS/PAC sensor [Thermoanaerobacter pseudethanolicus ATCC 33223] Length = 577 Score = 43.2 bits (100), Expect = 0.011, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 25/73 (34%), Gaps = 11/73 (15%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 L + C C C CP +AI + G ++ CIYCG C Sbjct: 1 MILDVISVSKANCKNCYRCVRHCPVKAIKVVGGQA-----------EVVDSLCIYCGRCV 49 Query: 111 EACPVDAIVEGPN 123 CP +A + Sbjct: 50 IECPQNAKKIRND 62 >gi|323475428|gb|ADX86034.1| 4Fe-4S ferredoxin, iron-sulfur binding domain [Sulfolobus islandicus REY15A] Length = 619 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 24/58 (41%), Gaps = 1/58 (1%) Query: 60 EERCIACKLCEAICPAQAITIESGPRC-HDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 CI C C ++CP T + + + D+ C CGLC++ CPV Sbjct: 284 FNGCILCGKCVSVCPYGEQTNDIFHTPLGFYSISYFEKENDLANCHMCGLCEQVCPVR 341 Score = 35.1 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 18/46 (39%), Gaps = 9/46 (19%) Query: 103 CIYCGLCQEACP----VDAIVEGPNFEFATETRQELYYDKERLLNN 144 CI CG C CP + I P + Y++KE L N Sbjct: 287 CILCGKCVSVCPYGEQTNDIFHTP---LGFYSIS--YFEKENDLAN 327 >gi|312904134|ref|ZP_07763302.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX0635] gi|310632610|gb|EFQ15893.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX0635] Length = 906 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 3/92 (3%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV 94 F +G P + + + + E+CI C+ C +C + + + Sbjct: 133 FTEGKRMPCHQEDTSNPFFSYDPEKCIMCRRCARVCQLRQGRDVLSIANRGFETKMMPSY 192 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 D C CG C +CP A+ E+ Sbjct: 193 GQAFDQSICESCGNCVSSCPTGALTAKDTKEY 224 >gi|298675715|ref|YP_003727465.1| pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta [Methanohalobium evestigatum Z-7303] gi|298288703|gb|ADI74669.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Methanohalobium evestigatum Z-7303] Length = 86 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 10/82 (12%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E G+T G + ++CI CKLCE +CP +AI ++ Sbjct: 10 EPGTTKKNKTGGWRNYKPIFLYDKCIKCKLCELLCPDEAINPREDG----------FFEY 59 Query: 99 DMIKCIYCGLCQEACPVDAIVE 120 D C CG+C CPV AI Sbjct: 60 DYDYCKGCGVCANECPVSAIEM 81 >gi|297619788|ref|YP_003707893.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanococcus voltae A3] gi|297378765|gb|ADI36920.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanococcus voltae A3] Length = 659 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 26/70 (37%), Gaps = 7/70 (10%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 + R E+ C CK+C +CP AIT E V C CG C Sbjct: 572 IEMIRATVDEDVCGGCKVCAIMCPYNAITYEEKEGHLVAITDDVA-------CKGCGACA 624 Query: 111 EACPVDAIVE 120 ACP A+ Sbjct: 625 GACPSGAMQL 634 Score = 40.5 bits (93), Expect = 0.072, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 24/75 (32%), Gaps = 7/75 (9%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAIT-------IESGPRCHDGTRRTVRYDI 98 F + + E C C C A+CP + + Y I Sbjct: 229 NFNVKLEKKARYIDEITCTGCGACAAVCPIEIPNEFDLGLGTRKAIYVPFPQAVPLVYTI 288 Query: 99 DMIKCIYCGLCQEAC 113 DM CI C LC + C Sbjct: 289 DMEHCINCELCSKVC 303 Score = 35.5 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 13/35 (37%), Positives = 15/35 (42%), Gaps = 3/35 (8%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQ 132 ID I C CG C CP I F+ TR+ Sbjct: 241 IDEITCTGCGACAAVCP---IEIPNEFDLGLGTRK 272 >gi|294495036|ref|YP_003541529.1| pyruvate ferredoxin oxidoreductase, subunit delta [Methanohalophilus mahii DSM 5219] gi|292666035|gb|ADE35884.1| pyruvate ferredoxin oxidoreductase, delta subunit [Methanohalophilus mahii DSM 5219] Length = 86 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 10/82 (12%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E G+T G R ++CI CKLCE +CP A+ R ++ Sbjct: 10 EPGTTRLNKTGGWRTFRPVYDYDKCIKCKLCELLCPDMAVLP----------RDDGFFEF 59 Query: 99 DMIKCIYCGLCQEACPVDAIVE 120 D C CG+C CP +AI Sbjct: 60 DYDYCKGCGICANECPTEAIDM 81 >gi|290996101|ref|XP_002680621.1| dihydroorotate dehydrogenase family protein [Naegleria gruberi] gi|284094242|gb|EFC47877.1| dihydroorotate dehydrogenase family protein [Naegleria gruberi] Length = 1038 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 7/65 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV-DA 117 +++CI C C C +SG + + T + C C LC CPV D Sbjct: 940 NDDKCINCGKCYLTCN------DSGYQAISFDKDTHIPKVSDDDCTGCTLCYSVCPVLDC 993 Query: 118 IVEGP 122 I P Sbjct: 994 IEMVP 998 >gi|326201303|ref|ZP_08191175.1| hydrogenase, Fe-only [Clostridium papyrosolvens DSM 2782] gi|325988871|gb|EGD49695.1| hydrogenase, Fe-only [Clostridium papyrosolvens DSM 2782] Length = 562 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 7/94 (7%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRY 96 EK G +R +CI C C C ++ R + T Sbjct: 125 EKKEMPIDDLGPSIIR----NPNKCILCGDCVRACQEIQGVGVLDFAYRGSNLQVTTAFN 180 Query: 97 D-IDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 + + C+ CG C+ CP A++ + + A E Sbjct: 181 KSLQEVDCVNCGQCRVVCPTGALMIKKDIDRAYE 214 >gi|256830133|ref|YP_003158861.1| glycyl-radical enzyme activating family protein [Desulfomicrobium baculatum DSM 4028] gi|256579309|gb|ACU90445.1| glycyl-radical enzyme activating protein family [Desulfomicrobium baculatum DSM 4028] Length = 306 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 11/58 (18%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 ++C+ C C CP A++ + C CG+C E CP A Sbjct: 57 PDKCVGCGECVEACPQGALSPGPDGMLRN-----------QDACTACGVCAEVCPALA 103 Score = 40.9 bits (94), Expect = 0.057, Method: Composition-based stats. Identities = 12/24 (50%), Positives = 15/24 (62%) Query: 100 MIKCIYCGLCQEACPVDAIVEGPN 123 KC+ CG C EACP A+ GP+ Sbjct: 57 PDKCVGCGECVEACPQGALSPGPD 80 >gi|256372222|ref|YP_003110046.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Acidimicrobium ferrooxidans DSM 10331] gi|256008806|gb|ACU54373.1| FAD-dependent pyridine nucleotide-disulphide oxidoreductase [Acidimicrobium ferrooxidans DSM 10331] Length = 762 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 9/58 (15%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +RC C+ C CP +AI ++ +D +C+ C C+ CP DAI Sbjct: 11 DRCAGCQECLIRCPVEAIDLDLD---------RYVVTVDSARCVGCRQCERVCPFDAI 59 >gi|256371808|ref|YP_003109632.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidimicrobium ferrooxidans DSM 10331] gi|256008392|gb|ACU53959.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidimicrobium ferrooxidans DSM 10331] Length = 512 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 24/83 (28%), Positives = 29/83 (34%), Gaps = 23/83 (27%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG---------LC 109 + CI CK C A CP AI I D KC +C C Sbjct: 95 NKAICIGCKACMAACPYDAIFINPE-------------DHSAEKCNFCAHRLDIGLEPAC 141 Query: 110 QEACPVDAIVEGP-NFEFATETR 131 CP +AI+ G + A TR Sbjct: 142 VVVCPTEAILIGKLEDDTARATR 164 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 23/86 (26%), Positives = 26/86 (30%), Gaps = 12/86 (13%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYD 97 + G R RC C C A CP A+ R D Sbjct: 44 RTYVKAVEVGTFPQVRRSFQVTRCNQCTNPPCVAACPTGAMYQ----------RPDGIVD 93 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPN 123 + CI C C ACP DAI P Sbjct: 94 FNKAICIGCKACMAACPYDAIFINPE 119 Score = 41.6 bits (96), Expect = 0.040, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 7/72 (9%) Query: 59 GEERCIACKLCEAICPAQAI-----TIESGPRCHDGTRRTVRYDIDMIKCIYCGL--CQE 111 + +CI C C C ++ T GT VR + +C C C Sbjct: 18 DQTKCIGCHACTTACKSENQVPLGVTRTYVKAVEVGTFPQVRRSFQVTRCNQCTNPPCVA 77 Query: 112 ACPVDAIVEGPN 123 ACP A+ + P+ Sbjct: 78 ACPTGAMYQRPD 89 >gi|258516624|ref|YP_003192846.1| ferredoxin [Desulfotomaculum acetoxidans DSM 771] gi|257780329|gb|ACV64223.1| ferredoxin [Desulfotomaculum acetoxidans DSM 771] Length = 312 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 22/67 (32%), Gaps = 3/67 (4%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM---IKCIYCGLCQEACPV 115 +CI C C + C A + V C+YCG C CPV Sbjct: 143 DPNKCILCGRCVSTCNAIPERSVIDFGYRGFNTKIVTGMDLPLAESDCVYCGRCVAVCPV 202 Query: 116 DAIVEGP 122 A+ P Sbjct: 203 GALTWKP 209 >gi|255594150|ref|XP_002536031.1| formate dehydrogenase, putative [Ricinus communis] gi|223521136|gb|EEF26352.1| formate dehydrogenase, putative [Ricinus communis] Length = 588 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 18/84 (21%), Positives = 27/84 (32%), Gaps = 9/84 (10%) Query: 55 RYPNGEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + +CI C C C + R D D +C+ CG C +A Sbjct: 30 YFTFDASKCIVCSRCVRACEETQGTFALTIQGRGFDSKVSAGGKDFLESECVSCGACVQA 89 Query: 113 CPVDAIVE-------GPNFEFATE 129 CP ++E P + T Sbjct: 90 CPTATLMEKTVIDAGTPEHKITTT 113 >gi|188588165|ref|YP_001921458.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium botulinum E3 str. Alaska E43] gi|188498446|gb|ACD51582.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium botulinum E3 str. Alaska E43] Length = 1172 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 32/105 (30%), Gaps = 20/105 (19%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI----------------- 80 F G+T+ RG +++CI C C +CP I Sbjct: 668 FMAGTTAYEKRGIAVNVPEWL-QDKCIQCNQCSYVCPHATIRPFLLNEEEKSKAPSSIKL 726 Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD--AIVEGPN 123 + + + C CG C E CP A++ P Sbjct: 727 IEPKALKSDEKLYYSIGVTPLDCTGCGNCVEVCPAPGKALIMKPQ 771 >gi|160891808|ref|ZP_02072811.1| hypothetical protein BACUNI_04265 [Bacteroides uniformis ATCC 8492] gi|156858286|gb|EDO51717.1| hypothetical protein BACUNI_04265 [Bacteroides uniformis ATCC 8492] Length = 498 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 3/89 (3%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C AC+LC ++CP Q + S + + C C E CP DAI Sbjct: 348 QHCTACQLCVSVCPNQVLRPSSDLTKLMQPEMSYERGYCRPE---CAKCAEVCPTDAIHL 404 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWE 149 E + + KE + D+ E Sbjct: 405 TSLAEKSAVQIGHAVWIKENCICITDKME 433 Score = 41.6 bits (96), Expect = 0.033, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 6/63 (9%) Query: 56 YPNGEERCIA----CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + CI C C CPA AI + + + + ++ +CI CG C+ Sbjct: 420 WIKENCICITDKMECGNCTRHCPAGAIQMVPSDPEDEASIKIPV--VNAERCIGCGACEN 477 Query: 112 ACP 114 CP Sbjct: 478 LCP 480 Score = 38.5 bits (88), Expect = 0.32, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 4/61 (6%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRY----DIDMIKCIYCGLCQEACPVDAIVEG 121 C C +CP AI + S + I + + CG C CP AI Sbjct: 390 CAKCAEVCPTDAIHLTSLAEKSAVQIGHAVWIKENCICITDKMECGNCTRHCPAGAIQMV 449 Query: 122 P 122 P Sbjct: 450 P 450 Score = 37.4 bits (85), Expect = 0.65, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 13/75 (17%) Query: 47 FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 F +++L + ++C +C LC C A I I++ ++ID +C+ C Sbjct: 208 FLSKYSLLKPVIDTKKCNSCGLCARNCKASCINIKA-------------HEIDYSRCVAC 254 Query: 107 GLCQEACPVDAIVEG 121 C C AI Sbjct: 255 MDCINKCRKGAITYT 269 >gi|126737492|ref|ZP_01753222.1| iron-sulfur cluster-binding protein [Roseobacter sp. SK209-2-6] gi|126720885|gb|EBA17589.1| iron-sulfur cluster-binding protein [Roseobacter sp. SK209-2-6] Length = 330 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 25/62 (40%), Gaps = 9/62 (14%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C C+ C +CP A+ + + R + C+ CG+C AC A+ Sbjct: 222 QNCNMCRACVWLCPTGALGLSAED---------GRLTLTENSCVQCGICVSACSQKALDL 272 Query: 121 GP 122 P Sbjct: 273 TP 274 >gi|146303090|ref|YP_001190406.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Metallosphaera sedula DSM 5348] gi|145701340|gb|ABP94482.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Metallosphaera sedula DSM 5348] Length = 404 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 5/60 (8%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 ++C C + ++S P ID KCI CG CQ ACP +A+ + Sbjct: 57 MSCNHC-----DNPVCMKSCPAVAISKNEMGIVTIDSNKCIGCGYCQWACPYEALHFSKD 111 Score = 39.3 bits (90), Expect = 0.20, Method: Composition-based stats. Identities = 17/90 (18%), Positives = 27/90 (30%), Gaps = 6/90 (6%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 + P S ++ + +CI C C+ CP +A+ Sbjct: 61 HCDNPVCMKSCPAVAISKNEMGIVTIDSNKCIGCGYCQWACPYEALHFSKDGTMGKCHLC 120 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 R M C E+CP A+ G Sbjct: 121 VDRLGKGMPY------CVESCPTGALTFGW 144 >gi|118594444|ref|ZP_01551791.1| electron transport complex protein RnfB [Methylophilales bacterium HTCC2181] gi|118440222|gb|EAV46849.1| electron transport complex protein RnfB [Methylophilales bacterium HTCC2181] Length = 188 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 21/82 (25%), Positives = 26/82 (31%), Gaps = 10/82 (12%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E + E+ CI C LC CP AI + + I Sbjct: 89 EYKPLNEEHGAIKPKSIAIIDEDTCIGCTLCIQACPVDAILGSAK----------HMHTI 138 Query: 99 DMIKCIYCGLCQEACPVDAIVE 120 +C C LC CPVD I Sbjct: 139 IEKECTGCELCLPPCPVDCIDM 160 >gi|254974676|ref|ZP_05271148.1| electron transport complex protein [Clostridium difficile QCD-66c26] gi|255092064|ref|ZP_05321542.1| electron transport complex protein [Clostridium difficile CIP 107932] gi|255100156|ref|ZP_05329133.1| electron transport complex protein [Clostridium difficile QCD-63q42] gi|255306046|ref|ZP_05350218.1| electron transport complex protein [Clostridium difficile ATCC 43255] gi|255313801|ref|ZP_05355384.1| electron transport complex protein [Clostridium difficile QCD-76w55] gi|255516482|ref|ZP_05384158.1| electron transport complex protein [Clostridium difficile QCD-97b34] gi|255649582|ref|ZP_05396484.1| electron transport complex protein [Clostridium difficile QCD-37x79] gi|260682746|ref|YP_003214031.1| electron transport complex protein [Clostridium difficile CD196] gi|260686344|ref|YP_003217477.1| electron transport complex protein [Clostridium difficile R20291] gi|306519708|ref|ZP_07406055.1| electron transport complex protein [Clostridium difficile QCD-32g58] gi|260208909|emb|CBA61897.1| electron transport complex protein [Clostridium difficile CD196] gi|260212360|emb|CBE03172.1| electron transport complex protein [Clostridium difficile R20291] Length = 323 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 23/89 (25%), Gaps = 11/89 (12%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 I P + E CI C +C C AI E Sbjct: 181 KGIIITKPESQEVVVECNSKEFGKAVKEKCTAGCIGCGMCVKACKFDAIIFEDKIA---- 236 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ID KC+ C C CP I Sbjct: 237 -------KIDPNKCVGCMQCVAKCPTKVI 258 Score = 41.2 bits (95), Expect = 0.044, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 5/69 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-----DIDMIKCIYCGLCQEAC 113 EE+C+ C C+ +CP I + + + + + CI CG+C +AC Sbjct: 165 DEEKCVNCGKCKEVCPKGIIITKPESQEVVVECNSKEFGKAVKEKCTAGCIGCGMCVKAC 224 Query: 114 PVDAIVEGP 122 DAI+ Sbjct: 225 KFDAIIFED 233 Score = 40.9 bits (94), Expect = 0.069, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 10/81 (12%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 K T ++ +E C+ C +C+ C AI E + +D Sbjct: 252 KCPTKVISGDITKKKKVTIDQELCVGCTVCKKQCKFDAIEGELKEKHK----------VD 301 Query: 100 MIKCIYCGLCQEACPVDAIVE 120 KC+ C LC E CP AI Sbjct: 302 ADKCVGCHLCMEKCPKKAIKI 322 Score = 38.2 bits (87), Expect = 0.43, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 11/61 (18%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C+ C AI+I G ID KC+ CG C+E CP I+ P Sbjct: 140 CLGLGTCKDACKFDAISIVDGIAV-----------IDEEKCVNCGKCKEVCPKGIIITKP 188 Query: 123 N 123 Sbjct: 189 E 189 >gi|15669356|ref|NP_248161.1| formylmethanofuran dehydrogenase subunit FwdG [Methanocaldococcus jannaschii DSM 2661] gi|47115674|sp|Q58567|FWDG_METJA RecName: Full=Polyferredoxin protein fwdG gi|1591793|gb|AAB99169.1| formylmethanofuran dehydrogenase, subunit G (tungsten) (fwdG) [Methanocaldococcus jannaschii DSM 2661] Length = 82 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 7/68 (10%) Query: 60 EERCIACKLCEAICPAQAITIE-SGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112 ERC C C CP A E G + +R + ++ C CG C EA Sbjct: 10 PERCHGCGNCVVSCPVNAKHPETWGGKGPYSDDVVIRVENGVVTVVNQDLCGGCGACIEA 69 Query: 113 CPVDAIVE 120 CPV+AI Sbjct: 70 CPVNAIEL 77 >gi|194334122|ref|YP_002015982.1| electron transport complex, RnfABCDGE type subunit C [Prosthecochloris aestuarii DSM 271] gi|194311940|gb|ACF46335.1| electron transport complex, RnfABCDGE type, C subunit [Prosthecochloris aestuarii DSM 271] Length = 441 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 27/89 (30%), Gaps = 3/89 (3%) Query: 26 YFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR 85 KA +++ P K ++ F AL + CI C C +CP Sbjct: 331 MMGKAIFSLDVPVVKTTSGILFLNNTALEKSKE--RTCIRCGKCVDVCPQGLGPWLLA-N 387 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C CG C CP Sbjct: 388 VAQMREFDDIQLYGLANCTECGSCTFVCP 416 >gi|326391445|ref|ZP_08212981.1| hydrogenase, Fe-only [Thermoanaerobacter ethanolicus JW 200] gi|325992524|gb|EGD50980.1| hydrogenase, Fe-only [Thermoanaerobacter ethanolicus JW 200] Length = 581 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 5/68 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK----CIYCGLCQEACP 114 +C+ C+ C A+C +Q + + + G + V CI CG C + CP Sbjct: 144 DPNKCVLCRRCVAVC-SQVQNVFAIGMVNRGFKTMVAPSFGRSLKDSPCISCGQCIQVCP 202 Query: 115 VDAIVEGP 122 V AI E Sbjct: 203 VGAIYEKD 210 >gi|312135816|ref|YP_004003154.1| hypothetical protein Calow_1825 [Caldicellulosiruptor owensensis OL] gi|311775867|gb|ADQ05354.1| protein of unknown function DUF362 [Caldicellulosiruptor owensensis OL] Length = 375 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 11/66 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI C C CPAQAI ++S +D+ KCI C C E CP AI Sbjct: 314 DKNICIGCAECFNTCPAQAIEMKSRKAY-----------VDLKKCIRCYCCHELCPAKAI 362 Query: 119 VEGPNF 124 +F Sbjct: 363 KIKRSF 368 >gi|311696980|gb|ADP99853.1| iron-sulfur cluster binding protein [marine bacterium HP15] Length = 483 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 34/123 (27%), Gaps = 15/123 (12%) Query: 29 KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE-RCIACKLCEAICPAQAIT--IESGPR 85 + ++ P E A + CI C C CP G Sbjct: 282 RKPDELDGPEEVHLVLLDNGRTGAFADAQMRQTLNCIRCGACMNHCPVYTRVGGHTYGEV 341 Query: 86 CHDGTRRTVRYDIDMIKCI--------YCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 + + + + + CG C E CPV P E RQE + Sbjct: 342 YPGPIGKIITPHMAGLDKVPDHPSASSLCGACGEVCPVKI----PIPELLQRLRQENVKN 397 Query: 138 KER 140 E+ Sbjct: 398 PEQ 400 >gi|302342224|ref|YP_003806753.1| methyl-viologen-reducing hydrogenase subunit delta [Desulfarculus baarsii DSM 2075] gi|301638837|gb|ADK84159.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfarculus baarsii DSM 2075] Length = 810 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 9/74 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E +CI C LC+ IC G G + +D + C G C ACP A+ Sbjct: 486 DESKCIGCGLCKEICDCG------GIEPVQGRGGNIPRHVDPMLCTGGGTCAAACPYHAL 539 Query: 119 VEGPNFEFATETRQ 132 N +T R+ Sbjct: 540 TLQNN---STAQRE 550 Score = 33.9 bits (76), Expect = 6.8, Method: Composition-based stats. Identities = 10/32 (31%), Positives = 14/32 (43%) Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + + +D KCI CGLC+E C Sbjct: 469 DKAKAGQLHAPRMVCVVDESKCIGCGLCKEIC 500 >gi|300854909|ref|YP_003779893.1| Fe-Fe hydrogenase 2 [Clostridium ljungdahlii DSM 13528] gi|300435024|gb|ADK14791.1| Fe-Fe hydrogenase 2 [Clostridium ljungdahlii DSM 13528] Length = 457 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 20/75 (26%), Positives = 28/75 (37%), Gaps = 10/75 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E C C+ C ICP AI E G I+ +C+ CG C + C A Sbjct: 12 DKELCTGCRRCADICPVDAIEGEKGQPQ----------TINTERCVLCGQCVQICSAYAS 61 Query: 119 VEGPNFEFATETRQE 133 + E +E Sbjct: 62 AFDEDITPHKEKIKE 76 Score = 33.9 bits (76), Expect = 7.8, Method: Composition-based stats. Identities = 11/21 (52%), Positives = 12/21 (57%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID C C C + CPVDAI Sbjct: 11 IDKELCTGCRRCADICPVDAI 31 >gi|282162750|ref|YP_003355135.1| hypothetical protein MCP_0080 [Methanocella paludicola SANAE] gi|282155064|dbj|BAI60152.1| conserved hypothetical protein [Methanocella paludicola SANAE] Length = 461 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 28/69 (40%), Gaps = 11/69 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI------YCGLCQEA 112 + +C C C ++CP A+ GT R + KCI C +C+E Sbjct: 357 NKGKCERCGTCGSVCPTGAVISIPEANMKMGTARLDK-----NKCIAWAQNKKCLICEEV 411 Query: 113 CPVDAIVEG 121 CPV AI Sbjct: 412 CPVKAIKST 420 Score = 41.2 bits (95), Expect = 0.048, Method: Composition-based stats. Identities = 21/61 (34%), Positives = 26/61 (42%), Gaps = 14/61 (22%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + CI C C CPA AI+ E+G D CI C C+ ACP +AI Sbjct: 220 NDSCIKCMKCRRACPAGAISKENG--------------FDTTACIKCLKCERACPENAIS 265 Query: 120 E 120 Sbjct: 266 F 266 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 24/64 (37%), Gaps = 1/64 (1%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C+ C C Q I +G T D + KC CG C CP A++ P Sbjct: 322 CVRCESCVKACLGQVIRP-AGLDGGLERAFTPVLDFNKGKCERCGTCGSVCPTGAVISIP 380 Query: 123 NFEF 126 Sbjct: 381 EANM 384 >gi|255994378|ref|ZP_05427513.1| electron transport complex, B subunit [Eubacterium saphenum ATCC 49989] gi|255993091|gb|EEU03180.1| electron transport complex, B subunit [Eubacterium saphenum ATCC 49989] Length = 271 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 22/82 (26%), Positives = 29/82 (35%), Gaps = 11/82 (13%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P +K A + CI CK C A C AI + Sbjct: 181 PKKKLVFVGCSSTHKAPDAMKACKVACIGCKKCVAACKFDAIHVND-----------FLA 229 Query: 97 DIDMIKCIYCGLCQEACPVDAI 118 +D KC+ CG C +ACP A+ Sbjct: 230 KVDYEKCVNCGACVKACPTKAL 251 Score = 37.8 bits (86), Expect = 0.51, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 5/66 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK-----CIYCGLCQEAC 113 E++C+AC C CP I+ + + D +K CI C C AC Sbjct: 158 DEDKCVACGQCAKACPKHLISDAPKKKLVFVGCSSTHKAPDAMKACKVACIGCKKCVAAC 217 Query: 114 PVDAIV 119 DAI Sbjct: 218 KFDAIH 223 Score = 34.7 bits (78), Expect = 4.5, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 20/54 (37%), Gaps = 1/54 (1%) Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CE C A + ID KC+ CG C +ACP I + P Sbjct: 129 CEFGCLGLA-DCVKACEFDAIHIKDGVAVIDEDKCVACGQCAKACPKHLISDAP 181 >gi|255010643|ref|ZP_05282769.1| putative ferredoxin [Bacteroides fragilis 3_1_12] Length = 278 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 19/64 (29%), Gaps = 12/64 (18%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + E C C C +CP AI +CI C C + C Sbjct: 202 TPWVEDESLCTHCGACAKMCPVSAIIKGDELNTD------------AERCIKCCACVKGC 249 Query: 114 PVDA 117 P A Sbjct: 250 PQKA 253 Score = 38.2 bits (87), Expect = 0.39, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 16/30 (53%) Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + D C +CG C + CPV AI++G Sbjct: 202 TPWVEDESLCTHCGACAKMCPVSAIIKGDE 231 >gi|242041649|ref|XP_002468219.1| hypothetical protein SORBIDRAFT_01g042020 [Sorghum bicolor] gi|241922073|gb|EER95217.1| hypothetical protein SORBIDRAFT_01g042020 [Sorghum bicolor] Length = 604 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 24/56 (42%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 K C C +++G C + T + I CI CG+C + CP DAI Sbjct: 19 KKCRQECKKSCPVVKTGKLCIEVTSASKLAFISEELCIGCGICVKKCPFDAIEIIN 74 >gi|197286544|ref|YP_002152416.1| propanediol utilization dehydratase activating enzyme [Proteus mirabilis HI4320] gi|194684031|emb|CAR45337.1| putative propanediol utilization protein (putative dehydratase activating enzyme) [Proteus mirabilis HI4320] Length = 316 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 5/54 (9%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 ++C+ C C +CPA + + + R D CI C C+E C Sbjct: 57 RDKCVDCGKCVDVCPAGVHYMTTNEQGQQVHRVDRAVD-----CIGCRKCEEVC 105 Score = 34.7 bits (78), Expect = 4.2, Method: Composition-based stats. Identities = 9/48 (18%), Positives = 13/48 (27%) Query: 76 QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +G + KC+ CG C + CP N Sbjct: 33 GCNIRCPWCSNPEGLSSEFQVMYSRDKCVDCGKCVDVCPAGVHYMTTN 80 >gi|194290510|ref|YP_002006417.1| 4fe-4S ferredoxin [Cupriavidus taiwanensis LMG 19424] gi|193224345|emb|CAQ70356.1| putative 4Fe-4S ferredoxin [Cupriavidus taiwanensis LMG 19424] Length = 721 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 22/100 (22%), Positives = 32/100 (32%), Gaps = 16/100 (16%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 L + + T P + + +C C C CP+QA+ Sbjct: 557 ALDHLVRHAPT---PAQSVPLPAGAP----IGAIAVDTGKCTLCLACVGACPSQALRDNP 609 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 R C+ CGLCQ+ CP DA+ P Sbjct: 610 ERPVLSFIERN---------CVQCGLCQKTCPEDAVTLVP 640 Score = 40.9 bits (94), Expect = 0.054, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 22/61 (36%), Gaps = 7/61 (11%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 +G + C C IC +AI R ++ C+ CG C CP A Sbjct: 335 HGRNQTTGCTACIDICSTEAI-------ASRWHDGKGRIEVAPNLCMGCGACTTVCPSGA 387 Query: 118 I 118 I Sbjct: 388 I 388 Score = 38.2 bits (87), Expect = 0.42, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 14/30 (46%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 ID+ C C C +ACP AI + + Sbjct: 215 IDLDLCTRCNACIDACPEGAIDFSYQIDLS 244 >gi|188995523|ref|YP_001929775.1| ferredoxin [Porphyromonas gingivalis ATCC 33277] gi|188595203|dbj|BAG34178.1| putative electron transport complex RnfABCDGE type B subunit [Porphyromonas gingivalis ATCC 33277] Length = 290 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 29/84 (34%), Gaps = 11/84 (13%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P + + CI C LC C +AITIE+ Sbjct: 193 PKSRRIFVSCVNKDKGGVAKKACSNACIGCSLCLKQCQFEAITIENNLSY---------- 242 Query: 97 DIDMIKCIYCGLCQEACPVDAIVE 120 ID KC C C E CP +AI E Sbjct: 243 -IDHTKCRMCRKCVEVCPTNAIHE 265 Score = 34.7 bits (78), Expect = 4.9, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 18/60 (30%), Gaps = 9/60 (15%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C C AI I ++ C CG C +ACP I Sbjct: 140 CLGLGDCVDACGFDAIRINPTTLLP---------EVVEDACTACGACVKACPKSIIELRK 190 >gi|270308191|ref|YP_003330249.1| iron-sulfur cluster-binding protein, ferredoxin-like protein [Dehalococcoides sp. VS] gi|270154083|gb|ACZ61921.1| iron-sulfur cluster-binding protein, ferredoxin-like protein [Dehalococcoides sp. VS] Length = 136 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 9/63 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E RC C C +CP A +I+S R + KCI CG+C ++CP A+ Sbjct: 82 NENRCTHCGACVTMCPVDAFSIDSESREIKFDAK---------KCIVCGICIQSCPPRAM 132 Query: 119 VEG 121 Sbjct: 133 ELH 135 >gi|150005462|ref|YP_001300206.1| F420H2:quinone oxidoreductase [Bacteroides vulgatus ATCC 8482] gi|149933886|gb|ABR40584.1| F420H2:quinone oxidoreductase [Bacteroides vulgatus ATCC 8482] Length = 427 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 6/61 (9%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 ++ C C C CP Q I++ + +D CI CGLC++ C Sbjct: 1 MIDITDKQSCCGCSSCVQKCPRQCISLHEDTEG------FLYPVVDKGDCIDCGLCEKVC 54 Query: 114 P 114 P Sbjct: 55 P 55 >gi|78043263|ref|YP_360108.1| iron-sulfur cluster-binding protein [Carboxydothermus hydrogenoformans Z-2901] gi|77995378|gb|ABB14277.1| iron-sulfur cluster-binding protein [Carboxydothermus hydrogenoformans Z-2901] Length = 205 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 11/70 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 ++CI C+ C +CP AI IE+ I+ C C C++ CP Sbjct: 9 QIDYDKCIGCQTCAKVCPVLAIKIENKKPV-----------INAEMCRGCAACEQRCPQY 57 Query: 117 AIVEGPNFEF 126 AI E Sbjct: 58 AINMVKREEP 67 >gi|83310776|ref|YP_421040.1| pyruvate with ferredoxin oxidoreductase and related 2-oxoacid with ferredoxin oxidoreductase [Magnetospirillum magneticum AMB-1] gi|82945617|dbj|BAE50481.1| Pyruvate with ferredoxin oxidoreductase and related 2-oxoacid with ferredoxin oxidoreductase [Magnetospirillum magneticum AMB-1] Length = 89 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 11/67 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +RC+ C C CP Q + + +D + C CG+C E CP AI Sbjct: 33 DRDRCVKCATCWLYCPVQCVVE-----------KAAWFDFNYDYCKGCGICAEECPHRAI 81 Query: 119 VEGPNFE 125 E Sbjct: 82 KMVEEAE 88 >gi|23013693|ref|ZP_00053560.1| COG2878: Predicted NADH:ubiquinone oxidoreductase, subunit RnfB [Magnetospirillum magnetotacticum MS-1] Length = 178 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 24/70 (34%), Gaps = 10/70 (14%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 R E+ CI C C C + AI + + C CG C + C Sbjct: 101 RVAFVNEDLCIGCLRCIGECGSDAIVGAPKQ----------LHTVIADACHACGKCFKIC 150 Query: 114 PVDAIVEGPN 123 P +AI P Sbjct: 151 PTEAIEMRPI 160 >gi|332298016|ref|YP_004439938.1| Soluble ligand binding domain protein [Treponema brennaborense DSM 12168] gi|332181119|gb|AEE16807.1| Soluble ligand binding domain protein [Treponema brennaborense DSM 12168] Length = 428 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 17/54 (31%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 C+ C C ++C A G + Y C C LC CP Sbjct: 355 SECLRCGNCRSVCQAGIEPDTLYAYYAHGKKTDPAYVRTTSLCSDCALCNAVCP 408 >gi|302384752|ref|YP_003820574.1| ferredoxin [Clostridium saccharolyticum WM1] gi|302195380|gb|ADL02951.1| ferredoxin [Clostridium saccharolyticum WM1] Length = 56 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 11/58 (18%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C++C CEA CP AI+ ++ ID CI CG C+ CP AI E Sbjct: 9 CVSCGSCEAECPVSAISQGD-----------SQFVIDADTCIDCGACEGVCPTGAISE 55 >gi|298504657|gb|ADI83380.1| ferredoxin and NADH nitroreductase domain protein [Geobacter sulfurreducens KN400] Length = 274 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 7/69 (10%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI-VEG 121 C C C ++CP + + +G + +CI CG C+ CP A+ V+ Sbjct: 11 CTRCGACVSVCPLRIV------ELPEGNLPPRFTEEGAGRCIICGHCEAVCPTAALAVDD 64 Query: 122 PNFEFATET 130 P + A + Sbjct: 65 PRLDPAVYS 73 >gi|288931561|ref|YP_003435621.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus placidus DSM 10642] gi|288893809|gb|ADC65346.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus placidus DSM 10642] Length = 358 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 17/84 (20%), Positives = 23/84 (27%), Gaps = 2/84 (2%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTR 91 I P + + + Y CI C C C A + Sbjct: 157 IGVPDNTPKYTFKNLPVVEEKLYRWDWNYCINCTRCVRGCNEVRGAEALSFTVVNGGIVV 216 Query: 92 RTVRYDIDMIKCIYCGLCQEACPV 115 D C +CG+C E CP Sbjct: 217 GRTAEDEIKSGCKFCGVCVEICPT 240 >gi|257468261|ref|ZP_05632357.1| hypothetical protein FulcA4_02917 [Fusobacterium ulcerans ATCC 49185] gi|317062541|ref|ZP_07927026.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Fusobacterium ulcerans ATCC 49185] gi|313688217|gb|EFS25052.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Fusobacterium ulcerans ATCC 49185] Length = 274 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 25/118 (21%), Positives = 36/118 (30%), Gaps = 28/118 (23%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P +K + R L C CK+C + CP +I + + Sbjct: 182 QPLDKENNPIDMRKVKPLT-----NNNCTDCKICVSACPLGSIEYDDVSKV--------- 227 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNG-DRWESEI 152 C+ CG C + CPV A + + K L R E EI Sbjct: 228 ----TGICMKCGACIKKCPVHAKYYTD---------ESFLFHKHDLEEKFTRRAEPEI 272 >gi|257437596|ref|ZP_05613351.1| putative 4Fe-4S ferredoxin, iron-sulfur binding protein [Faecalibacterium prausnitzii A2-165] gi|257199903|gb|EEU98187.1| putative 4Fe-4S ferredoxin, iron-sulfur binding protein [Faecalibacterium prausnitzii A2-165] Length = 251 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 18/58 (31%), Positives = 22/58 (37%), Gaps = 12/58 (20%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 CI+C LC CP AI+ ++ KCI C C CPV A Sbjct: 177 NANCISCGLCARECPVGAISYDNFTVTD------------PSKCITCMRCVSRCPVHA 222 Score = 35.5 bits (80), Expect = 2.4, Method: Composition-based stats. Identities = 11/22 (50%), Positives = 11/22 (50%) Query: 101 IKCIYCGLCQEACPVDAIVEGP 122 CI CGLC CPV AI Sbjct: 178 ANCISCGLCARECPVGAISYDN 199 >gi|256762397|ref|ZP_05502977.1| formate dehydrogenase [Enterococcus faecalis T3] gi|256683648|gb|EEU23343.1| formate dehydrogenase [Enterococcus faecalis T3] Length = 895 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 3/92 (3%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV 94 F +G P + + + + E+CI C+ C +C + + + Sbjct: 122 FTEGKRMPCHQEDTSNPFFSYDPEKCIMCRRCARVCQLRQGRDVLSIANRGFETKMMPSY 181 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 D C CG C +CP A+ E+ Sbjct: 182 GQAFDQSICESCGNCVSSCPTGALTAKDTKEY 213 >gi|255526394|ref|ZP_05393307.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium carboxidivorans P7] gi|296188391|ref|ZP_06856782.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7] gi|255509900|gb|EET86227.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium carboxidivorans P7] gi|296047012|gb|EFG86455.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7] Length = 265 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 21/83 (25%), Positives = 30/83 (36%), Gaps = 13/83 (15%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 +P F + + C C +CE++C Q I +E P+ + Sbjct: 175 VNPLFNKSAMNTKNFYANDNCTGCGICESVCNCQTIKVEGKPK-------------WGNE 221 Query: 103 CIYCGLCQEACPVDAIVEGPNFE 125 C C C CPV AI G E Sbjct: 222 CSQCLACINLCPVKAIQYGKATE 244 >gi|198471457|ref|XP_001355634.2| GA15293 [Drosophila pseudoobscura pseudoobscura] gi|198145925|gb|EAL32693.2| GA15293 [Drosophila pseudoobscura pseudoobscura] Length = 1027 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 14/65 (21%), Positives = 18/65 (27%), Gaps = 8/65 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP-VDA 117 ++ CI C C C + C C LC CP +D Sbjct: 946 NDDMCINCGKCYMTCA-------DSGYQAIKFDKDTHLPHVNDDCTGCTLCVSVCPIIDC 998 Query: 118 IVEGP 122 I P Sbjct: 999 ITMEP 1003 >gi|182417703|ref|ZP_02949022.1| pyruvate formate-lyase-activating enzyme [Clostridium butyricum 5521] gi|237669148|ref|ZP_04529132.1| glycyl-radical enzyme activating family protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182378427|gb|EDT75958.1| pyruvate formate-lyase-activating enzyme [Clostridium butyricum 5521] gi|237657496|gb|EEP55052.1| glycyl-radical enzyme activating family protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 310 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 12/62 (19%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C AC C+ IC AI I+S +Y ID KCI CG C E C +A+ Sbjct: 59 NIKNCTACGNCKEICSVHAIDIDS------------KYRIDRSKCINCGKCIEECYSEAL 106 Query: 119 VE 120 V Sbjct: 107 VM 108 >gi|167377360|ref|XP_001734372.1| iron hydrogenase [Entamoeba dispar SAW760] gi|165904163|gb|EDR29489.1| iron hydrogenase, putative [Entamoeba dispar SAW760] Length = 468 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 16/89 (17%), Positives = 22/89 (24%), Gaps = 10/89 (11%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT------ 93 S G +C+ C +C C + + Sbjct: 2 PPKPSHTVTGHDHNHSIQFDWSKCMGCGICATKCTFGVLVKQPPKIPPFIHPNRDKLSQE 61 Query: 94 ----VRYDIDMIKCIYCGLCQEACPVDAI 118 R ID +C CG C C AI Sbjct: 62 NNDKTRVLIDESECTGCGQCSLVCNFGAI 90 >gi|159186286|ref|NP_355957.2| formate dehydrogenase alpha subunit [Agrobacterium tumefaciens str. C58] gi|159141420|gb|AAK88742.2| formate dehydrogenase alpha subunit [Agrobacterium tumefaciens str. C58] Length = 960 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 21/75 (28%), Gaps = 3/75 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T G C+ CG C + Sbjct: 171 YFTYDPSKCIVCSRCVRACEEVQGTFALTIEGRGFESRVSPGAHEAFLDSDCVSCGACVQ 230 Query: 112 ACPVDAIVEGPNFEF 126 ACP + E E Sbjct: 231 ACPTATLTEKSVIEI 245 >gi|11499234|ref|NP_070472.1| tungsten formylmethanofuran dehydrogenase, subunit F (fwdF) [Archaeoglobus fulgidus DSM 4304] gi|2648906|gb|AAB89598.1| tungsten formylmethanofuran dehydrogenase, subunit F (fwdF) [Archaeoglobus fulgidus DSM 4304] Length = 438 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 1/74 (1%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 LR + C C +C CP AI + G ID +KC YCG+C Sbjct: 24 ELRELYYDYKWCNGCGICVYACPVNAIELGPVHDIAIGLDMPPVI-IDHLKCAYCGICYS 82 Query: 112 ACPVDAIVEGPNFE 125 CP +A+ N E Sbjct: 83 FCPFNALDFYINGE 96 Score = 42.4 bits (98), Expect = 0.024, Method: Composition-based stats. Identities = 22/59 (37%), Positives = 28/59 (47%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 E C CKLCE +CP +AI +E + ID C +C C+E CP DA Sbjct: 195 DETACDYCKLCEEVCPEEAIKVEGKRISFQLPEKIAEITIDQELCSHCSYCEEVCPYDA 253 Score = 42.0 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 2/60 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++C C +C C + + ID C YC LC+E CP +AI Sbjct: 157 DRDKCNLCGICAEFCEV--FKMVEKEPHPEDVMPYSDILIDETACDYCKLCEEVCPEEAI 214 Score = 40.9 bits (94), Expect = 0.062, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 3/69 (4%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR---TVRYDIDMIKCIYCGLC 109 + +C C +C + CP A+ D + V Y C C LC Sbjct: 64 MPPVIIDHLKCAYCGICYSFCPFNALDFYINGERVDKSSLTLSPVMYTYKYETCRECTLC 123 Query: 110 QEACPVDAI 118 + CP +AI Sbjct: 124 YKVCPTNAI 132 Score = 37.4 bits (85), Expect = 0.60, Method: Composition-based stats. Identities = 13/25 (52%), Positives = 16/25 (64%) Query: 103 CIYCGLCQEACPVDAIVEGPNFEFA 127 C CG+C ACPV+AI GP + A Sbjct: 35 CNGCGICVYACPVNAIELGPVHDIA 59 Score = 37.4 bits (85), Expect = 0.62, Method: Composition-based stats. Identities = 23/94 (24%), Positives = 31/94 (32%), Gaps = 8/94 (8%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P++ T G+ L + C C IC R ++ R Sbjct: 249 CPYDAAKTIKPMEGKLELFEARMARCDPVGCAACIIICKHN--------RVWYVSKDKGR 300 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 + CIYCG C+ ACP D I F E Sbjct: 301 VHFNEKFCIYCGACENACPYDLIKVTRKSYFTKE 334 Score = 37.0 bits (84), Expect = 0.96, Method: Composition-based stats. Identities = 21/67 (31%), Positives = 26/67 (38%), Gaps = 4/67 (5%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV----RYDIDMIKCIYCGLC 109 Y E C C LC +CP AI E + + +ID KC CG+C Sbjct: 108 VMYTYKYETCRECTLCYKVCPTNAIKREVKITRQQIEEKNEGIEGKVEIDRDKCNLCGIC 167 Query: 110 QEACPVD 116 E C V Sbjct: 168 AEFCEVF 174 >gi|327399377|ref|YP_004340246.1| cobyrinic acid ac-diamide synthase [Hippea maritima DSM 10411] gi|327182006|gb|AEA34187.1| Cobyrinic acid ac-diamide synthase [Hippea maritima DSM 10411] Length = 278 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 16/109 (14%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP-V 115 E+ C C C +C +A+ + P ++T+ +D C CG C CP Sbjct: 60 QINEDVCTFCGKCAEVCAYKALVVMGEP-----LKKTMFFD---ELCHSCGACAYVCPIE 111 Query: 116 DAIVEGP----NFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDS 160 A++E P + + LL+ G ++++ + D Sbjct: 112 GALIEVPKRVGEIRTGKASHIDFVMG---LLDIGQASATQLIATLKRDY 157 >gi|319762960|ref|YP_004126897.1| electron transport complex, rnfabcdge type, b subunit [Alicycliphilus denitrificans BC] gi|330825040|ref|YP_004388343.1| RnfABCDGE type electron transport complex subunit B [Alicycliphilus denitrificans K601] gi|317117521|gb|ADV00010.1| electron transport complex, RnfABCDGE type, B subunit [Alicycliphilus denitrificans BC] gi|329310412|gb|AEB84827.1| electron transport complex, RnfABCDGE type, B subunit [Alicycliphilus denitrificans K601] Length = 227 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 24/64 (37%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C LC CP AI G + + I C C LC ACPVD I Sbjct: 93 DENWCIGCTLCIKACPTDAI---------LGLNKRMHTVIAP-HCTGCELCLPACPVDCI 142 Query: 119 VEGP 122 Sbjct: 143 RMEN 146 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C LC +ACP DAI Sbjct: 92 IDENWCIGCTLCIKACPTDAI 112 >gi|260171471|ref|ZP_05757883.1| putative hydrogenase 4Fe-4S binding subunit [Bacteroides sp. D2] Length = 266 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 30/77 (38%), Gaps = 12/77 (15%) Query: 51 HALRRYPNGEERCIACKLCEAICP----AQAITIESGPRCHDGT--------RRTVRYDI 98 + + +CI C C A CP ++ I + P+ + R Sbjct: 144 ERWKYWMEEMSKCIKCYACRAACPLCYCSRCIVEVNCPQWVQPWSAPLTNMEWQINRVMH 203 Query: 99 DMIKCIYCGLCQEACPV 115 +CI CG C++ACPV Sbjct: 204 MAGRCIGCGACKQACPV 220 >gi|253579943|ref|ZP_04857211.1| formate dehydrogenase [Ruminococcus sp. 5_1_39B_FAA] gi|251848942|gb|EES76904.1| formate dehydrogenase [Ruminococcus sp. 5_1_39BFAA] Length = 902 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 24/88 (27%), Gaps = 5/88 (5%) Query: 54 RRYPNGEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 + + CI C C C AI + + C CG C Sbjct: 139 KFFTYDPSLCILCHRCVNTCKEIVGRGAIDTMNRGFQSVIGAHYKHKW-NEGICESCGNC 197 Query: 110 QEACPVDAIVEGPNFEFATETRQELYYD 137 +ACP A+ ++ + Sbjct: 198 VQACPTGALTMKRRKKYRPYQIDKKVLT 225 >gi|296109957|ref|YP_003616906.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus infernus ME] gi|295434771|gb|ADG13942.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus infernus ME] Length = 252 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 29/87 (33%), Gaps = 11/87 (12%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93 P + + +E C+ C +C CP I G Sbjct: 166 EQCPKKAVKVERELGNIYKEGHMEVDKELCVGCMVCVEECPIDCIYDIGG---------- 215 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVE 120 +ID KC+ C +C+E CP AI Sbjct: 216 -VVEIDNDKCVLCRICEEVCPTKAIKM 241 Score = 40.9 bits (94), Expect = 0.060, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 3/76 (3%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103 + + + + CI C CE CP +A+ +E R + ++D C Sbjct: 139 PTKAIKVVRKKSFSVNLDLCIGCGACEEQCPKKAVKVE---RELGNIYKEGHMEVDKELC 195 Query: 104 IYCGLCQEACPVDAIV 119 + C +C E CP+D I Sbjct: 196 VGCMVCVEECPIDCIY 211 Score = 40.5 bits (93), Expect = 0.081, Method: Composition-based stats. Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 10/74 (13%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 + + L+ Y +E+C C +C +CP +AI + R + +++ CI Sbjct: 110 EVMKRKIRLKNYIFNDEKCGKCGICAMVCPTKAIKVV----------RKKSFSVNLDLCI 159 Query: 105 YCGLCQEACPVDAI 118 CG C+E CP A+ Sbjct: 160 GCGACEEQCPKKAV 173 Score = 37.8 bits (86), Expect = 0.54, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 26/73 (35%), Gaps = 15/73 (20%) Query: 61 ERCIACKLCEAICPAQAITIESG---------------PRCHDGTRRTVRYDIDMIKCIY 105 + CI C++C CP AI + G R Y + KC Sbjct: 71 DNCIKCEICAKTCPVDAIFVIEGDVNIKDSKIVLSINKKEVMKRKIRLKNYIFNDEKCGK 130 Query: 106 CGLCQEACPVDAI 118 CG+C CP AI Sbjct: 131 CGICAMVCPTKAI 143 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 26/115 (22%), Positives = 38/115 (33%), Gaps = 10/115 (8%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 E E + E C C LC CP AI R Sbjct: 18 EELLKHIANHLSEIRGKLIYVNESICCKCNLCYKECPVDAIERAKVKRAVK--------- 68 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEI 152 CI C +C + CPVDAI +++ L +K+ ++ R ++ I Sbjct: 69 -IKDNCIKCEICAKTCPVDAIFVIEGDVNIKDSKIVLSINKKEVMKRKIRLKNYI 122 >gi|224371564|ref|YP_002605728.1| putative dissimilatory sulfite reductase [Desulfobacterium autotrophicum HRM2] gi|223694281|gb|ACN17564.1| putative dissimilatory sulfite reductase [Desulfobacterium autotrophicum HRM2] Length = 267 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 15/53 (28%), Positives = 20/53 (37%), Gaps = 9/53 (16%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 CI C C C AI + +ID +C+ C C +ACP Sbjct: 151 CIGCGACVDACQEGAIALTGDGEQP---------EIDFDRCLMCAKCVKACPT 194 Score = 35.1 bits (79), Expect = 3.1, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 1/56 (1%) Query: 71 AICPAQAITIESGPRCH-DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 + AQ S P+ G R + CI CG C +AC AI + E Sbjct: 118 RVAVAQCPNGCSQPQIKGIGIISAARPGVTEEACIGCGACVDACQEGAIALTGDGE 173 >gi|189460039|ref|ZP_03008824.1| hypothetical protein BACCOP_00675 [Bacteroides coprocola DSM 17136] gi|189433200|gb|EDV02185.1| hypothetical protein BACCOP_00675 [Bacteroides coprocola DSM 17136] Length = 445 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 1/56 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + CI C C + CP G V +++ M CI CG CQ CP Sbjct: 364 EPQPCIRCAKCVSACPMGLEPFLLATCSAHGDWERVEHEMIMS-CIECGSCQFTCP 418 >gi|297619955|ref|YP_003708060.1| Glutamate synthase (NADPH) [Methanococcus voltae A3] gi|297378932|gb|ADI37087.1| Glutamate synthase (NADPH) [Methanococcus voltae A3] Length = 510 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 25/81 (30%), Gaps = 14/81 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++CI C C C AI +C C C CP DAI Sbjct: 15 DHDKCILCGRCAKECAWDAIRKSKDKIIT-----------YDNRCGSCFRCASMCPRDAI 63 Query: 119 VEGPNFEFATETRQELYYDKE 139 E ++ R+ + E Sbjct: 64 TIV---ENPSQGRKHPVWTPE 81 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 13/37 (35%), Positives = 18/37 (48%) Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 + ID KCI CG C + C DAI + + + R Sbjct: 11 KITIDHDKCILCGRCAKECAWDAIRKSKDKIITYDNR 47 >gi|21229366|ref|NP_635288.1| coenzyme F420 hydrogenase subunit beta [Methanosarcina mazei Go1] gi|20907953|gb|AAM32960.1| Coenzyme F420 hydrogenase beta subunit [Methanosarcina mazei Go1] Length = 296 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 24/89 (26%), Positives = 28/89 (31%), Gaps = 11/89 (12%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 P G + EE C+ CK CE C AI + Sbjct: 138 KIAVTGCPAACVRPQDNDFGIMGTVKPEVLEENCVGCKRCEKACKMGAIKVIEDKAS--- 194 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ID KCI CG C AC DA+ Sbjct: 195 --------IDTEKCILCGACIAACRKDAL 215 >gi|220931054|ref|YP_002507962.1| putative PAS/PAC sensor protein [Halothermothrix orenii H 168] gi|219992364|gb|ACL68967.1| putative PAS/PAC sensor protein [Halothermothrix orenii H 168] Length = 571 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 11/56 (19%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 +C C C CP +AI I+ G +D +CI CG C EACP +A Sbjct: 10 KCRDCYKCIRYCPVKAIGIKDGQA-----------WVDEDRCILCGRCIEACPQNA 54 Score = 33.9 bits (76), Expect = 6.7, Method: Composition-based stats. Identities = 11/32 (34%), Positives = 12/32 (37%) Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 KC C C CPV AI + E R Sbjct: 8 EAKCRDCYKCIRYCPVKAIGIKDGQAWVDEDR 39 >gi|332800132|ref|YP_004461631.1| pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta [Tepidanaerobacter sp. Re1] gi|332697867|gb|AEE92324.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Tepidanaerobacter sp. Re1] Length = 122 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 24/69 (34%), Gaps = 10/69 (14%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 EERCI C +C CP +I G + C CG+C CP A Sbjct: 53 WDEERCIHCLICWRYCPDASIISTGGKFDSFDYKH----------CKGCGICANVCPTHA 102 Query: 118 IVEGPNFEF 126 I E Sbjct: 103 IEMISEDEI 111 >gi|323701257|ref|ZP_08112932.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfotomaculum nigrificans DSM 574] gi|323533859|gb|EGB23723.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfotomaculum nigrificans DSM 574] Length = 727 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 18/70 (25%), Positives = 22/70 (31%), Gaps = 10/70 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L +RC CK C CP AI + + +C CG C A Sbjct: 511 LSYPEFALQRCTQCKRCTEECPFGAINEDEKGNPLP----------NPTRCRRCGTCMGA 560 Query: 113 CPVDAIVEGP 122 CP I Sbjct: 561 CPERIISFKN 570 >gi|302391759|ref|YP_003827579.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acetohalobium arabaticum DSM 5501] gi|302203836|gb|ADL12514.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acetohalobium arabaticum DSM 5501] Length = 252 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 22/69 (31%), Gaps = 4/69 (5%) Query: 56 YPNGEERCIAC-KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C C + C+ AI T + ID CI CG C E CP Sbjct: 119 DYDCVLYCGKCVRACKEEVGIGAINFVGR---GYETEVDTPFSIDSDVCIGCGACAEVCP 175 Query: 115 VDAIVEGPN 123 AI Sbjct: 176 TGAIEVDDE 184 >gi|291548248|emb|CBL21356.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Ruminococcus sp. SR1/5] Length = 56 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 11/58 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C++C CE CP +AI+ Y ID C+ CG C EACPV AI Sbjct: 7 DECVSCGTCEGECPNEAISQGDE-----------HYVIDADACVDCGTCAEACPVGAI 53 >gi|270296500|ref|ZP_06202700.1| conserved hypothetical protein [Bacteroides sp. D20] gi|270273904|gb|EFA19766.1| conserved hypothetical protein [Bacteroides sp. D20] Length = 498 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 33/89 (37%), Gaps = 3/89 (3%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C AC+LC ++CP Q + S + + C C E CP DAI Sbjct: 348 QHCTACQLCVSVCPNQVLRPSSDLTKLMQPEMSYERGYCRPE---CAKCAEVCPTDAIHL 404 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWE 149 E + + KE + D+ E Sbjct: 405 TSLAEKSAVQIGHAVWIKENCICITDKME 433 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 6/63 (9%) Query: 56 YPNGEERCIA----CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + CI C C CPA AI + + + + ++ +CI CG C+ Sbjct: 420 WIKENCICITDKMECGNCARHCPAGAIQMVPSDPEDEASIKIPV--VNAERCIGCGACEN 477 Query: 112 ACP 114 CP Sbjct: 478 LCP 480 Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 4/61 (6%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRY----DIDMIKCIYCGLCQEACPVDAIVEG 121 C C +CP AI + S + I + + CG C CP AI Sbjct: 390 CAKCAEVCPTDAIHLTSLAEKSAVQIGHAVWIKENCICITDKMECGNCARHCPAGAIQMV 449 Query: 122 P 122 P Sbjct: 450 P 450 Score = 37.4 bits (85), Expect = 0.68, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 13/75 (17%) Query: 47 FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 F +++L + ++C +C LC C A I I++ ++ID +C+ C Sbjct: 208 FLSKYSLLKPVIDTKKCNSCGLCARNCKASCINIKA-------------HEIDYSRCVAC 254 Query: 107 GLCQEACPVDAIVEG 121 C C AI Sbjct: 255 MDCINKCRKGAITYT 269 >gi|289578467|ref|YP_003477094.1| glutamate synthase (NADPH) [Thermoanaerobacter italicus Ab9] gi|289528180|gb|ADD02532.1| Glutamate synthase (NADPH) [Thermoanaerobacter italicus Ab9] Length = 501 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 17/106 (16%), Positives = 40/106 (37%), Gaps = 14/106 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++CI CK+C C + + + + + + C+ C C CP A+ Sbjct: 15 DYDKCINCKVCMRQCSFEVHSYDE---------HLDKMVSNDMNCVNCQRCVVLCPTQAL 65 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWES--EIVRNIVTDSPY 162 + R+ + + + + + E+ ++ ++ D PY Sbjct: 66 TIIKH---PQTFREHANWTYDAIRDIYKQAETGGVLLSSMGNDRPY 108 >gi|322419467|ref|YP_004198690.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein [Geobacter sp. M18] gi|320125854|gb|ADW13414.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp. M18] Length = 56 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 11/64 (17%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + CI C C+ CP AI+ R I CI CG C + CP Sbjct: 1 MAHIISDECINCGACDDSCPVNAISEAGSKR-----------TIAADTCIDCGACVDTCP 49 Query: 115 VDAI 118 V AI Sbjct: 50 VSAI 53 >gi|258513528|ref|YP_003189750.1| hydrogenase, Fe-only [Desulfotomaculum acetoxidans DSM 771] gi|257777233|gb|ACV61127.1| hydrogenase, Fe-only [Desulfotomaculum acetoxidans DSM 771] Length = 573 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 3/68 (4%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY---DIDMIKCIYCGLCQEACPV 115 +CI C+ C ++C P+ + C+ CG C CP Sbjct: 144 DPRKCILCRRCVSVCENIQKVTAIAPQERGFDTVIAPAFLASLSDSTCVNCGQCALVCPT 203 Query: 116 DAIVEGPN 123 AIVE Sbjct: 204 AAIVEKNQ 211 >gi|258404218|ref|YP_003196960.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfohalobium retbaense DSM 5692] gi|257796445|gb|ACV67382.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfohalobium retbaense DSM 5692] Length = 144 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 21/58 (36%), Gaps = 13/58 (22%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 CI C C CP AI ++ CI+CG C E CP D + Sbjct: 86 CIQCGDCARACPVDAIYMDPETNAPVV-------------CIHCGRCVEFCPHDCLEM 130 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 17/47 (36%), Positives = 19/47 (40%) Query: 77 AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 A E+ P R+ CI CG C ACPVDAI P Sbjct: 60 APCAEACPTGAMRQRKGGGVVYTKSLCIQCGDCARACPVDAIYMDPE 106 >gi|227485674|ref|ZP_03915990.1| iron-sulfur cluster-binding protein [Anaerococcus lactolyticus ATCC 51172] gi|227236346|gb|EEI86361.1| iron-sulfur cluster-binding protein [Anaerococcus lactolyticus ATCC 51172] Length = 287 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 20/92 (21%), Positives = 32/92 (34%), Gaps = 18/92 (19%) Query: 27 FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC 86 FF+ P ++++ + E++CI+C C +C +S Sbjct: 200 FFRPFCKWICP---LGAFYSLFNKYSIYQLKLNEDKCISCGKCARVCKMDVDIRQSTTHL 256 Query: 87 HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI CG C +ACP AI Sbjct: 257 E---------------CIRCGDCVKACPTKAI 273 >gi|225570606|ref|ZP_03779631.1| hypothetical protein CLOHYLEM_06708 [Clostridium hylemonae DSM 15053] gi|225160619|gb|EEG73238.1| hypothetical protein CLOHYLEM_06708 [Clostridium hylemonae DSM 15053] Length = 560 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 17/82 (20%), Positives = 24/82 (29%), Gaps = 3/82 (3%) Query: 55 RYPNGEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRY-DIDMIKCIYCGLCQE 111 +CI C C C ++ R D+ C+ CG C+ Sbjct: 137 CIVRDPNKCILCGDCVRTCDEIQGLGVLDFAFRGARMQVMPAFNKDLAKTDCVGCGQCRA 196 Query: 112 ACPVDAIVEGPNFEFATETRQE 133 CP AI N E + Sbjct: 197 VCPTGAITIKQNIRPVWEAVAD 218 >gi|219850884|ref|YP_002465316.1| nitrite and sulphite reductase 4Fe-4S region [Methanosphaerula palustris E1-9c] gi|219545143|gb|ACL15593.1| nitrite and sulphite reductase 4Fe-4S region [Methanosphaerula palustris E1-9c] Length = 301 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 23/60 (38%), Gaps = 11/60 (18%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C C C +AI I G +D +C+ CG+C CP + I P Sbjct: 166 CTGCGTCAHHCKEEAIRISGGKVV-----------LDQERCMLCGMCVSPCPFEIIKADP 214 >gi|167756713|ref|ZP_02428840.1| hypothetical protein CLORAM_02251 [Clostridium ramosum DSM 1402] gi|237732719|ref|ZP_04563200.1| pyruvate-flavodoxin oxidoreductase [Mollicutes bacterium D7] gi|167702888|gb|EDS17467.1| hypothetical protein CLORAM_02251 [Clostridium ramosum DSM 1402] gi|229384214|gb|EEO34305.1| pyruvate-flavodoxin oxidoreductase [Coprobacillus sp. D7] Length = 1172 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 38/125 (30%), Gaps = 34/125 (27%) Query: 57 PNGEERCIACKLCEAICPA---QAITIESGPRCHDGTRRTV---------------RYDI 98 ++ CI C C +CP +A ++ + R + Sbjct: 684 RWNKDNCIQCNNCVMVCPHATIRAFLLDEEEMANLPENIGDDVLVPMGKDMGGLVYRIQV 743 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVT 158 C+ CGLC CP E E+ K+ L++ + + + Sbjct: 744 SPDNCVGCGLCVTECPGKK----------GEKALEMVSVKDELVH------APLADYMYA 787 Query: 159 DSPYR 163 + YR Sbjct: 788 NVKYR 792 >gi|157364217|ref|YP_001470984.1| hypothetical protein Tlet_1363 [Thermotoga lettingae TMO] gi|157314821|gb|ABV33920.1| protein of unknown function DUF39 [Thermotoga lettingae TMO] Length = 443 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 15/59 (25%), Positives = 23/59 (38%), Gaps = 11/59 (18%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 + C+ C C ++CP A+ + G + KC C C +ACPV Sbjct: 388 KEDKPECVDCGACVSLCPFDALLLVDGK-----------FTFLREKCTMCLQCSDACPV 435 >gi|150403300|ref|YP_001330594.1| putative ATPase RIL [Methanococcus maripaludis C7] gi|150034330|gb|ABR66443.1| ABC transporter related [Methanococcus maripaludis C7] Length = 590 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 23/73 (31%), Gaps = 1/73 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +RC + C C + + I C CG+C + CP AI Sbjct: 8 DYDRCQP-RRCSMECMKYCPGVRMEEETIVMDENLGKPIISEELCSGCGICTKRCPFQAI 66 Query: 119 VEGPNFEFATETR 131 E T+ R Sbjct: 67 KIIGLPEELTDDR 79 >gi|220929711|ref|YP_002506620.1| hydrogenase, Fe-only [Clostridium cellulolyticum H10] gi|220000039|gb|ACL76640.1| hydrogenase, Fe-only [Clostridium cellulolyticum H10] Length = 562 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 32/92 (34%), Gaps = 7/92 (7%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP--AQAITIESGPRCHDGTRRTVRY 96 EK G +R +CI C C C ++ R + T Sbjct: 125 EKKEIPIDDMGPSVIR----NPNKCILCGDCVRACQEIQGVGVLDFAYRGSNLQVTTAFN 180 Query: 97 D-IDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 + + C+ CG C+ CP A++ + + A Sbjct: 181 KSLQEVDCVNCGQCRVVCPTGALMIKKDIDRA 212 >gi|126698736|ref|YP_001087633.1| electron transport complex protein [Clostridium difficile 630] gi|115250173|emb|CAJ67994.1| Electron transport complex protein [Clostridium difficile] Length = 325 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 23/89 (25%), Gaps = 11/89 (12%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 I P + E CI C +C C AI E Sbjct: 183 KGIIITKPESQEVVVECNSKEFGKAVKEKCTAGCIGCGMCVKACKFDAIIFEDKIA---- 238 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ID KC+ C C CP I Sbjct: 239 -------KIDPNKCVGCMQCVAKCPTKVI 260 Score = 41.2 bits (95), Expect = 0.045, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 30/69 (43%), Gaps = 5/69 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY-----DIDMIKCIYCGLCQEAC 113 EE+C+ C C+ +CP I + + + + + CI CG+C +AC Sbjct: 167 DEEKCVNCGKCKEVCPKGIIITKPESQEVVVECNSKEFGKAVKEKCTAGCIGCGMCVKAC 226 Query: 114 PVDAIVEGP 122 DAI+ Sbjct: 227 KFDAIIFED 235 Score = 40.5 bits (93), Expect = 0.072, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 10/81 (12%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 K T ++ +E C+ C +C+ C AI E + +D Sbjct: 254 KCPTKVISGDITKKKKVTIDQELCVGCTVCKKQCKFDAIEGELKEKHK----------VD 303 Query: 100 MIKCIYCGLCQEACPVDAIVE 120 KC+ C LC E CP AI Sbjct: 304 ADKCVGCHLCMEKCPKKAIKI 324 Score = 38.2 bits (87), Expect = 0.44, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 25/61 (40%), Gaps = 11/61 (18%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C+ C AI+I G ID KC+ CG C+E CP I+ P Sbjct: 142 CLGLGTCKDACKFDAISIVDGIAV-----------IDEEKCVNCGKCKEVCPKGIIITKP 190 Query: 123 N 123 Sbjct: 191 E 191 >gi|332799825|ref|YP_004461324.1| hydrogenase, Fe-only [Tepidanaerobacter sp. Re1] gi|332697560|gb|AEE92017.1| hydrogenase, Fe-only [Tepidanaerobacter sp. Re1] Length = 584 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 26/93 (27%), Positives = 38/93 (40%), Gaps = 7/93 (7%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRR 92 I YP EK +R +CI C+ C + C Q + + S T Sbjct: 123 IRYPGEKSKAQYDDFSPSIVR----DTSKCILCRRCVSTCHKVQGVGVISPNYRGFNTVI 178 Query: 93 TVRYDIDMIK--CIYCGLCQEACPVDAIVEGPN 123 YD+ + + C+ CG C ACPV A+ E + Sbjct: 179 APVYDMSLSEVSCVNCGQCIMACPVGALKEKDD 211 >gi|317484988|ref|ZP_07943871.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia 3_1_6] gi|316923726|gb|EFV44929.1| 4Fe-4S binding domain-containing protein [Bilophila wadsworthia 3_1_6] Length = 295 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 23/63 (36%), Gaps = 11/63 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ERC C C AIC +AI + R I C CG C CP A+ Sbjct: 63 DPERCTLCGACRAICRYKAIAQFA-----------SRLTIFTDMCHGCGGCFAVCPSQAL 111 Query: 119 VEG 121 G Sbjct: 112 TPG 114 >gi|310828225|ref|YP_003960582.1| RnfB [Eubacterium limosum KIST612] gi|308739959|gb|ADO37619.1| RnfB [Eubacterium limosum KIST612] Length = 347 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 11/62 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CIACK C +CPA+AIT+E+ I+ KC C C E CP AI Sbjct: 213 CDIGCIACKACVKVCPAEAITVENNLAS-----------INYDKCTQCQACFEKCPTGAI 261 Query: 119 VE 120 Sbjct: 262 TL 263 Score = 41.2 bits (95), Expect = 0.047, Method: Composition-based stats. Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 5/70 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV-----RYDIDMIKCIYCGLCQEAC 113 ++C AC C CP I + G + R + I CI C C + C Sbjct: 168 DVDKCTACGKCRDACPKGIIDLIPGDQLVHVDCRNTDKGKLVRAVCDIGCIACKACVKVC 227 Query: 114 PVDAIVEGPN 123 P +AI N Sbjct: 228 PAEAITVENN 237 Score = 37.0 bits (84), Expect = 1.0, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 24/64 (37%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C + C A++I +D+ KC CG C++ACP I Sbjct: 138 CRHGCMGLGTCVSACMFGALSIGDNGLPE----------VDVDKCTACGKCRDACPKGII 187 Query: 119 VEGP 122 P Sbjct: 188 DLIP 191 >gi|308163098|gb|EFO65459.1| Nitroreductase Fd-NR2 [Giardia lamblia P15] Length = 264 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 11/68 (16%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C C +C +CP + ++ + R CI+CG C CP +I Sbjct: 11 DTCTGCNMCVEVCPTAVLKVDPETKVVAYANR--------DNCIFCGHCGAICPTGSISM 62 Query: 121 ---GPNFE 125 P E Sbjct: 63 FGITPESE 70 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 8/37 (21%), Positives = 12/37 (32%), Gaps = 1/37 (2%) Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATE-TRQELYY 136 C C +C E CP + P + R + Sbjct: 11 DTCTGCNMCVEVCPTAVLKVDPETKVVAYANRDNCIF 47 >gi|295094257|emb|CBK83348.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Coprococcus sp. ART55/1] Length = 597 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 25/58 (43%), Gaps = 11/58 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+CI CK C AI ++ G ID C CGLC + CPV AI Sbjct: 545 EKCIQCKKCIREIGCPAIILKDGKVA-----------IDESLCTGCGLCSQICPVGAI 591 >gi|241768212|ref|ZP_04765649.1| electron transport complex, RnfABCDGE type, B subunit [Acidovorax delafieldii 2AN] gi|241360346|gb|EER57547.1| electron transport complex, RnfABCDGE type, B subunit [Acidovorax delafieldii 2AN] Length = 171 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 26/81 (32%), Gaps = 10/81 (12%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 +P E E CI C LC CP AI + + + + Sbjct: 70 PLNPEHGVEAPRNVVYIDENWCIGCTLCIKACPTDAIVGANK----------LMHTVLES 119 Query: 102 KCIYCGLCQEACPVDAIVEGP 122 C C LC CPVD I Sbjct: 120 HCTGCELCIPVCPVDCIQIEN 140 >gi|225572358|ref|ZP_03781222.1| hypothetical protein RUMHYD_00652 [Blautia hydrogenotrophica DSM 10507] gi|225040240|gb|EEG50486.1| hypothetical protein RUMHYD_00652 [Blautia hydrogenotrophica DSM 10507] Length = 202 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 11/72 (15%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 ++ + + P C C C AICP +A+ + KCI Sbjct: 113 PYKPQMQMPATPICLPSCTRCGTCAAICPTEAVRVCED-----------FVQTKAEKCIL 161 Query: 106 CGLCQEACPVDA 117 C C ACP +A Sbjct: 162 CMACTAACPENA 173 Score = 34.7 bits (78), Expect = 4.2, Method: Composition-based stats. Identities = 10/37 (27%), Positives = 15/37 (40%) Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 G R + + I + C CG C CP +A+ Sbjct: 109 PGNRPYKPQMQMPATPICLPSCTRCGTCAAICPTEAV 145 >gi|224371395|ref|YP_002605559.1| 4Fe-4S iron-sulfur binding protein (ferredoxin) [Desulfobacterium autotrophicum HRM2] gi|223694112|gb|ACN17395.1| 4Fe-4S iron-sulfur binding protein (ferredoxin) [Desulfobacterium autotrophicum HRM2] Length = 273 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 21/89 (23%), Positives = 29/89 (32%), Gaps = 15/89 (16%) Query: 37 PFEKGSTSPRFRGEHA--LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 P+ + G L+ P CI CKLC +CP +I + + Sbjct: 174 PYREYYRPKDQNGNPVNILKVTPKTNSDCIDCKLCSEVCPMGSIDSDDVSKI-------- 225 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 CI C C + CPV A Sbjct: 226 -----TGICIKCCACVKKCPVGAKYFDDE 249 >gi|222150018|ref|YP_002550975.1| formate dehydrogenase, alpha subunit [Agrobacterium vitis S4] gi|221737000|gb|ACM37963.1| formate dehydrogenase, alpha subunit [Agrobacterium vitis S4] Length = 959 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRT--VRYDIDMIKCIYCGLCQE 111 + +CI C C C Q + G+R + +C+ CG C + Sbjct: 170 YFTYDPSKCIVCSRCVRACEEVQGTFALTIEGRGFGSRVSPGAHEAFLESECVSCGACVQ 229 Query: 112 ACPVDAIVE 120 ACP + E Sbjct: 230 ACPTATLTE 238 >gi|239815994|ref|YP_002944904.1| formate dehydrogenase, subunit alpha [Variovorax paradoxus S110] gi|239802571|gb|ACS19638.1| formate dehydrogenase, alpha subunit [Variovorax paradoxus S110] Length = 957 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 22/69 (31%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T SG +C+ CG C + Sbjct: 160 YFTYDPSKCIVCNRCVRACEETQGTFALTISGRGFESRVSPGQDQPFMESECVSCGACVQ 219 Query: 112 ACPVDAIVE 120 ACP + E Sbjct: 220 ACPTATLQE 228 >gi|254166869|ref|ZP_04873723.1| 4Fe-4S binding domain protein [Aciduliprofundum boonei T469] gi|289596256|ref|YP_003482952.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Aciduliprofundum boonei T469] gi|197624479|gb|EDY37040.1| 4Fe-4S binding domain protein [Aciduliprofundum boonei T469] gi|289534043|gb|ADD08390.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Aciduliprofundum boonei T469] Length = 62 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 23/66 (34%), Gaps = 11/66 (16%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + C C C CP + ++ ID KCI CG C A Sbjct: 1 MNMMNVDPAICNYCGACVGSCPVNCMFLDE-----------TIVRIDEDKCIKCGFCIRA 49 Query: 113 CPVDAI 118 CPV AI Sbjct: 50 CPVGAI 55 >gi|156846852|ref|XP_001646312.1| hypothetical protein Kpol_1032p48 [Vanderwaltozyma polyspora DSM 70294] gi|156116987|gb|EDO18454.1| hypothetical protein Kpol_1032p48 [Vanderwaltozyma polyspora DSM 70294] Length = 607 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 23/54 (42%) Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C +++G C + + I I CI CG+C + CP DAI Sbjct: 21 CRQECKRSCPVVKTGKLCIEVAPNSKIAFISEILCIGCGICVKKCPFDAIQIIN 74 >gi|20093760|ref|NP_613607.1| coenzyme F420-reducing hydrogenase, beta subunit [Methanopyrus kandleri AV19] gi|19886667|gb|AAM01537.1| Coenzyme F420-reducing hydrogenase, beta subunit [Methanopyrus kandleri AV19] Length = 377 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 26/80 (32%), Gaps = 8/80 (10%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIES-------GPRCHDGTRRTVRYDIDMIKCI 104 L +RCI C+ C +CP A E + C+ Sbjct: 279 WLTEAIEALDRCIKCRSCRQVCPVCASCEEGCWSFAGRESVTPTPVWHAHIAQCVALYCV 338 Query: 105 YCGLCQEACPVDAIVEGPNF 124 CG C+ ACP + I + Sbjct: 339 ECGACETACPAE-IPLTRIY 357 >gi|332978350|gb|EGK15075.1| electron transport complex [Psychrobacter sp. 1501(2011)] Length = 275 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 20/60 (33%), Gaps = 10/60 (16%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + CI C C CP AI + I C C LC CPVD I Sbjct: 113 DDCIGCTKCIPACPVDAIVGTGK----------HMHTIISDLCTGCELCLPPCPVDCIDL 162 Score = 37.0 bits (84), Expect = 0.78, Method: Composition-based stats. Identities = 15/41 (36%), Positives = 17/41 (41%) Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 + + VR I CI C C ACPVDAIV Sbjct: 93 QWPVDPNTHRPTEVRAVIREDDCIGCTKCIPACPVDAIVGT 133 >gi|331091575|ref|ZP_08340411.1| pyruvate:ferredoxin oxidoreductase [Lachnospiraceae bacterium 2_1_46FAA] gi|330403602|gb|EGG83158.1| pyruvate:ferredoxin oxidoreductase [Lachnospiraceae bacterium 2_1_46FAA] Length = 1179 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 18/81 (22%), Gaps = 15/81 (18%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRT 93 RG E CI C C +CP A Sbjct: 679 RGIAVDIPVWK-PENCIQCNRCAYVCPHAVIRPVALTEEEAANAPEGLETIDMIGMPGLK 737 Query: 94 VRYDIDMIKCIYCGLCQEACP 114 + C CG C CP Sbjct: 738 FTMTVSAYDCTGCGSCANVCP 758 >gi|319638299|ref|ZP_07993062.1| iron-sulfur protein [Neisseria mucosa C102] gi|317400572|gb|EFV81230.1| iron-sulfur protein [Neisseria mucosa C102] Length = 484 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 18/65 (27%), Gaps = 10/65 (15%) Query: 62 RCIACKLCEAICPA-----QAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQE 111 +CI C C CP A + P C CG C E Sbjct: 317 QCIRCGACMNHCPVYTRIGGAAYGTTYPGPIGEIISPHLLGLDATRDLPTACTMCGACVE 376 Query: 112 ACPVD 116 CPV Sbjct: 377 VCPVR 381 >gi|291521605|emb|CBK79898.1| PAS domain S-box [Coprococcus catus GD/7] Length = 581 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 11/63 (17%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C C C C +AI ++ I C+ CG C E CP +A Sbjct: 11 CKHCYKCVRSCSVKAIKVKDAQA-----------TIMDDHCVLCGTCLEVCPQNAKTFVS 59 Query: 123 NFE 125 + E Sbjct: 60 DLE 62 >gi|297526113|ref|YP_003668137.1| Cobyrinic acid ac-diamide synthase [Staphylothermus hellenicus DSM 12710] gi|297255029|gb|ADI31238.1| Cobyrinic acid ac-diamide synthase [Staphylothermus hellenicus DSM 12710] Length = 295 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 24/65 (36%), Gaps = 10/65 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 ++C C +C IC AI + I C C C ACP + Sbjct: 66 FIDTKKCTKCGVCAKICDTGAILMPPN----------SFPVIFPRLCSGCKACYYACPYN 115 Query: 117 AIVEG 121 AI++G Sbjct: 116 AILKG 120 Score = 37.8 bits (86), Expect = 0.51, Method: Composition-based stats. Identities = 12/26 (46%), Positives = 15/26 (57%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPN 123 ID KC CG+C + C AI+ PN Sbjct: 67 IDTKKCTKCGVCAKICDTGAILMPPN 92 >gi|237748067|ref|ZP_04578547.1| nitroreductase [Oxalobacter formigenes OXCC13] gi|229379429|gb|EEO29520.1| nitroreductase [Oxalobacter formigenes OXCC13] Length = 282 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 8/62 (12%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 E C C+ C +CPA + E + CI CG C +ACP ++ Sbjct: 12 HETCDTCRKCVQVCPAGILVQERKKEPIGVE--------HLENCIVCGHCADACPTGSLQ 63 Query: 120 EG 121 Sbjct: 64 HS 65 >gi|225573811|ref|ZP_03782566.1| hypothetical protein RUMHYD_02013 [Blautia hydrogenotrophica DSM 10507] gi|225038839|gb|EEG49085.1| hypothetical protein RUMHYD_02013 [Blautia hydrogenotrophica DSM 10507] Length = 277 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 23/79 (29%), Positives = 29/79 (36%), Gaps = 11/79 (13%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100 + RFR + I C CE CP AI + G+ T ID+ Sbjct: 23 WPSEERFRRGPVAISECVQQ---IPCNPCEKSCPVHAIHV--------GSPITNTPRIDL 71 Query: 101 IKCIYCGLCQEACPVDAIV 119 C+ CG C CP AI Sbjct: 72 DLCVGCGNCVALCPGLAIF 90 >gi|253701409|ref|YP_003022598.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp. M21] gi|251776259|gb|ACT18840.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp. M21] Length = 1012 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 7/64 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C++C C C AI+ P + + ++ I C GLC CP AI Sbjct: 941 NENNCVSCGACITACKYGAISFVDTP-------KGKKARVEPILCKGDGLCNAKCPTQAI 993 Query: 119 VEGP 122 Sbjct: 994 YLKH 997 Score = 35.5 bits (80), Expect = 2.8, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 49/157 (31%), Gaps = 39/157 (24%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITI-------ESGPRCHDGTRRTVRYDI 98 F+ + EE+C C +C CP + + + + Sbjct: 94 DFKVTLTKKPRYISEEKCTGCNICVDYCPVKIPDPFNQNLSENKAVHIYFSQAVPLVTYV 153 Query: 99 DMIKCIY-----CGLCQEACPVDAIVEGPNFE--------------FATET---RQELYY 136 D C+Y C +C AC +AI E ++T R + Y Sbjct: 154 DPETCLYLKEGKCQICVGACKTNAIDLHQKPETFQVEVGAIILSPGYSTFDPKLRNDFGY 213 Query: 137 DK----------ERLLNNGDRWESEIVRNIVTDSPYR 163 K ER+L +E E++R P++ Sbjct: 214 GKMQNVVTSLDFERILCATGPYEGEVLRPSDKKHPHK 250 >gi|170755623|ref|YP_001781808.1| iron-sulfur cluster-binding protein [Clostridium botulinum B1 str. Okra] gi|169120835|gb|ACA44671.1| iron-sulfur cluster-binding protein [Clostridium botulinum B1 str. Okra] Length = 273 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 53/153 (34%), Gaps = 31/153 (20%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRY--PN 58 M I R ++ K ++ F T P+ K +G+ R P Sbjct: 145 MDIVRILADEIYTKIISEKI---IKTVFVKGNT---PYRKYYMPKDEKGQPIDIRKVKPK 198 Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI CKLC +CP +I E + + CI C C + CPV A Sbjct: 199 TNNNCINCKLCANLCPIGSIDFEDVTKLN-------------EICIKCCACIKKCPVGA- 244 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 F+ + L + KE L N R+ E Sbjct: 245 ---KYFDDSGY----LKHKKE--LENNFRYRKE 268 >gi|154492142|ref|ZP_02031768.1| hypothetical protein PARMER_01774 [Parabacteroides merdae ATCC 43184] gi|154087367|gb|EDN86412.1| hypothetical protein PARMER_01774 [Parabacteroides merdae ATCC 43184] Length = 458 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 19/61 (31%), Positives = 24/61 (39%), Gaps = 11/61 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +RC+ C C CP AI I G C+ CG C +ACP +AI Sbjct: 13 DNDRCVGCTHCMTKCPTGAIRIREGKASIRKGW-----------CVDCGECLKACPTEAI 61 Query: 119 V 119 Sbjct: 62 Y 62 >gi|5734562|emb|CAB52788.1| polyferredoxin [Methanothermobacter thermautotrophicus] Length = 447 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 3/60 (5%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++CI C+ C CPA AI + + T+ ID CI CGLC E CP DAI Sbjct: 351 DTDKCILCEKCGIHCPADAIPKTTMKKRRITGGFTL---IDPRLCIGCGLCLEICPEDAI 407 Score = 41.6 bits (96), Expect = 0.039, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 10/95 (10%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93 I+ P + + + CI C LC ICP AI+ + Sbjct: 363 IHCPADAIPKTTMKKRRITGGFTLIDPRLCIGCGLCLEICPEDAISKDESG--------- 413 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 +D KCI+CG C CP A++ F + Sbjct: 414 -LMMVDEDKCIHCGACSNICPARAVLFEREFGLSD 447 Score = 37.8 bits (86), Expect = 0.56, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 10/76 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY---------DIDMIKCIYCGLC 109 E+C C+ C+ CP AI +++ R +ID KC C C Sbjct: 147 DPEKCTLCRRCQYYCPTGAIIVDTDEGVCTECRVCEDVCPVGAIEDLEIDPEKCTLCLKC 206 Query: 110 QEACPVDAIVEGPNFE 125 CP AI +FE Sbjct: 207 LRECPSRAIY-VDDFE 221 Score = 37.4 bits (85), Expect = 0.76, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 10/72 (13%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 A+R CI C C CP +AI R Y +D KC CG+C+ Sbjct: 21 EAIRMIDGRAFSCITCGACMEACPNKAIRRN----------RYGGYVVDRAKCNACGVCE 70 Query: 111 EACPVDAIVEGP 122 CPV++I Sbjct: 71 MTCPVNSIRIED 82 Score = 37.0 bits (84), Expect = 0.89, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 11/74 (14%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R +R + E CI+C +C ICP AIT+ + ++D KCI C Sbjct: 311 RDFKTVRWDGSVSEDCISCGVCSEICPVDAITL-----------KRGSIEVDTDKCILCE 359 Query: 108 LCQEACPVDAIVEG 121 C CP DAI + Sbjct: 360 KCGIHCPADAIPKT 373 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 20/67 (29%), Gaps = 9/67 (13%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 C++C C C + CI CG+C E C Sbjct: 286 MVDGELRGYCVSCGRCVRACDV---------SRARDFKTVRWDGSVSEDCISCGVCSEIC 336 Query: 114 PVDAIVE 120 PVDAI Sbjct: 337 PVDAITL 343 >gi|77920096|ref|YP_357911.1| iron-containing hydrogenase, Hyd gamma [Pelobacter carbinolicus DSM 2380] gi|77546179|gb|ABA89741.1| iron-containing hydrogenase, Hyd gamma [Pelobacter carbinolicus DSM 2380] Length = 598 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 3/70 (4%) Query: 59 GEERCIACKLCEAICPAQAIT---IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 +CI C C IC T + ++ C+ CG C CPV Sbjct: 147 DMTKCIRCGRCVTICREVQGTDVLFYANKGVDSEIGVRDSDLLNTSDCVSCGQCTLVCPV 206 Query: 116 DAIVEGPNFE 125 A+ E + E Sbjct: 207 GALAERDDTE 216 >gi|39995201|ref|NP_951152.1| heterodisulfide reductase subunit [Geobacter sulfurreducens PCA] gi|39981963|gb|AAR33425.1| heterodisulfide reductase subunit [Geobacter sulfurreducens PCA] gi|298504205|gb|ADI82928.1| heterodisulfide reductase, subunit A [Geobacter sulfurreducens KN400] Length = 665 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 1/56 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 E RC+AC C+ ICP A+ E R G V ++ C CG CQ CP Sbjct: 590 DERRCVACLYCKKICPYGAVE-EKEIRDRQGNLIRVVAYVNPGVCGGCGTCQATCP 644 Score = 33.5 bits (75), Expect = 8.7, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 23/68 (33%), Gaps = 13/68 (19%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY--------DIDMIKCIY----- 105 E +C C +C A CP + I V + ID C Y Sbjct: 239 DESKCTGCGVCMAKCPQKKIPNSFDKNLGMRPAIYVPFPQAVPNTPVIDRENCTYFKSGK 298 Query: 106 CGLCQEAC 113 CG+C + C Sbjct: 299 CGVCAKVC 306 >gi|15966762|ref|NP_387115.1| NAD-dependent formate dehydrogenase alpha subunit protein [Sinorhizobium meliloti 1021] gi|307301589|ref|ZP_07581348.1| formate dehydrogenase, alpha subunit [Sinorhizobium meliloti BL225C] gi|307316387|ref|ZP_07595831.1| formate dehydrogenase, alpha subunit [Sinorhizobium meliloti AK83] gi|15076034|emb|CAC47588.1| Probable NAD-dependent formate dehydrogenase alpha subunit [Sinorhizobium meliloti 1021] gi|306898227|gb|EFN28969.1| formate dehydrogenase, alpha subunit [Sinorhizobium meliloti AK83] gi|306903287|gb|EFN33876.1| formate dehydrogenase, alpha subunit [Sinorhizobium meliloti BL225C] Length = 959 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 25/75 (33%), Gaps = 3/75 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T SG + D +C+ CG C + Sbjct: 170 YFTYDPAKCIVCSRCVRACEEVQGTFALTISGRGFDSRVSAGMNEDFVSSECVSCGACVQ 229 Query: 112 ACPVDAIVEGPNFEF 126 ACP + E E Sbjct: 230 ACPTATLTEKSVIEI 244 >gi|325960237|ref|YP_004291703.1| NADH dehydrogenase (quinone) [Methanobacterium sp. AL-21] gi|325331669|gb|ADZ10731.1| NADH dehydrogenase (quinone) [Methanobacterium sp. AL-21] Length = 619 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 10/63 (15%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 L Y +E+C C LC CP A++ + + ID KCI CG C Sbjct: 554 KELINYTVVDEKCEGCMLCLKSCPVGAVSGT----------KKHIHSIDTEKCIKCGTCI 603 Query: 111 EAC 113 E C Sbjct: 604 ELC 606 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 12/55 (21%), Positives = 19/55 (34%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 + IE + + Y + KC C LC ++CPV A+ Sbjct: 533 KYFEDEYISHIEDKRCKALLCKELINYTVVDEKCEGCMLCLKSCPVGAVSGTKKH 587 >gi|320352768|ref|YP_004194107.1| nitroreductase [Desulfobulbus propionicus DSM 2032] gi|320121270|gb|ADW16816.1| nitroreductase [Desulfobulbus propionicus DSM 2032] Length = 276 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 21/64 (32%), Gaps = 8/64 (12%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + + CI C C CP I + G + R CI C C CP Sbjct: 4 HFTIDRDLCIQCGACADDCPFHIIDLTDGYPALNPAREH--------HCIQCQHCLAVCP 55 Query: 115 VDAI 118 A+ Sbjct: 56 TAAL 59 Score = 40.9 bits (94), Expect = 0.063, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 13/30 (43%) Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 + ID CI CG C + CP I + Sbjct: 4 HFTIDRDLCIQCGACADDCPFHIIDLTDGY 33 >gi|307266694|ref|ZP_07548222.1| hydrogenase, Fe-only [Thermoanaerobacter wiegelii Rt8.B1] gi|306918296|gb|EFN48542.1| hydrogenase, Fe-only [Thermoanaerobacter wiegelii Rt8.B1] Length = 581 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 5/68 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK----CIYCGLCQEACP 114 +C+ C+ C A+C +Q + + + G + V CI CG C + CP Sbjct: 144 DPNKCVLCRRCVAVC-SQVQNVFAIGMVNRGFKTMVAPSFGRSLKDSPCISCGQCIQVCP 202 Query: 115 VDAIVEGP 122 V AI E Sbjct: 203 VGAIYEKD 210 >gi|304315374|ref|YP_003850521.1| energy-converting hydrogenase B, subunit K [Methanothermobacter marburgensis str. Marburg] gi|302588833|gb|ADL59208.1| energy-converting hydrogenase B, subunit K [Methanothermobacter marburgensis str. Marburg] Length = 447 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 3/60 (5%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++CI C+ C CPA AI + + T+ ID CI CGLC E CP DAI Sbjct: 351 DTDKCILCEKCGIHCPADAIPKTTMKKRRITGGFTL---IDPRLCIGCGLCLEICPEDAI 407 Score = 41.6 bits (96), Expect = 0.039, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 34/95 (35%), Gaps = 10/95 (10%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93 I+ P + + + CI C LC ICP AI+ + Sbjct: 363 IHCPADAIPKTTMKKRRITGGFTLIDPRLCIGCGLCLEICPEDAISKDESG--------- 413 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFAT 128 +D KCI+CG C CP A++ F + Sbjct: 414 -LMMVDEDKCIHCGACSNICPARAVLFEREFGLSD 447 Score = 37.8 bits (86), Expect = 0.55, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 10/76 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY---------DIDMIKCIYCGLC 109 E+C C+ C+ CP AI +++ R +ID KC C C Sbjct: 147 DPEKCTLCRRCQYYCPTGAIIVDTDEGVCTECRVCEDVCPVGAIEDLEIDPEKCTLCLKC 206 Query: 110 QEACPVDAIVEGPNFE 125 CP AI +FE Sbjct: 207 LRECPSRAIY-VDDFE 221 Score = 37.4 bits (85), Expect = 0.76, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 29/72 (40%), Gaps = 10/72 (13%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 A+R CI C C CP +AI R Y +D KC CG+C+ Sbjct: 21 EAIRMIDGRAFSCITCGACMEACPNKAIRRN----------RYGGYVVDRAKCNACGVCE 70 Query: 111 EACPVDAIVEGP 122 CPV++I Sbjct: 71 MTCPVNSIRIED 82 Score = 37.0 bits (84), Expect = 0.88, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 11/74 (14%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R +R + E CI+C +C ICP AIT+ + ++D KCI C Sbjct: 311 RDFKTVRWDGSVSEDCISCGVCSEICPVDAITL-----------KRGSIEVDTDKCILCE 359 Query: 108 LCQEACPVDAIVEG 121 C CP DAI + Sbjct: 360 KCGIHCPADAIPKT 373 Score = 35.8 bits (81), Expect = 2.1, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 20/67 (29%), Gaps = 9/67 (13%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 C++C C C + CI CG+C E C Sbjct: 286 MVDGELRGYCVSCGRCVRACDV---------SRARDFKTVRWDGSVSEDCISCGVCSEIC 336 Query: 114 PVDAIVE 120 PVDAI Sbjct: 337 PVDAITL 343 >gi|262383251|ref|ZP_06076387.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|301309306|ref|ZP_07215248.1| putative 4Fe-4S binding domain protein [Bacteroides sp. 20_3] gi|262294149|gb|EEY82081.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|300832395|gb|EFK63023.1| putative 4Fe-4S binding domain protein [Bacteroides sp. 20_3] Length = 262 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 11/87 (12%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 KG+ R +G + + C C+ C +CP AI++ D Sbjct: 169 EVKGNFPYRVKGPSTPQAPVTDNDLCTQCEYCVDVCPTHAISLADEGMYSD--------- 219 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNF 124 CI C C + CP A + Sbjct: 220 --PNLCIKCCACVKECPEGARTFDTPY 244 Score = 35.5 bits (80), Expect = 2.5, Method: Composition-based stats. Identities = 7/30 (23%), Positives = 10/30 (33%) Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATET 130 C C C + CP AI ++ Sbjct: 192 DLCTQCEYCVDVCPTHAISLADEGMYSDPN 221 >gi|256841600|ref|ZP_05547107.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256737443|gb|EEU50770.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 262 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 11/87 (12%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 KG+ R +G + + C C+ C +CP AI++ D Sbjct: 169 EVKGNFPYRVKGPSTPQAPVTDNDLCTQCEYCVDVCPTHAISLADEGMYSD--------- 219 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNF 124 CI C C + CP A + Sbjct: 220 --PNLCIKCCACVKECPEGARTFDTPY 244 Score = 35.5 bits (80), Expect = 2.5, Method: Composition-based stats. Identities = 7/30 (23%), Positives = 10/30 (33%) Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATET 130 C C C + CP AI ++ Sbjct: 192 DLCTQCEYCVDVCPTHAISLADEGMYSDPN 221 >gi|237653625|ref|YP_002889939.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Thauera sp. MZ1T] gi|237624872|gb|ACR01562.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Thauera sp. MZ1T] Length = 100 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 11/83 (13%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100 SP G+ R ++C+ C +C CP Q + + +D DM Sbjct: 27 TEQSPMLPGDWRSFRPVVDRDKCVKCAVCWLYCPVQCVEEHAA-----------WFDFDM 75 Query: 101 IKCIYCGLCQEACPVDAIVEGPN 123 C CG+C CP AI P Sbjct: 76 KTCKGCGICAHECPQRAITMIPE 98 >gi|254283952|ref|ZP_04958920.1| serine/threonine protein kinase [gamma proteobacterium NOR51-B] gi|219680155|gb|EED36504.1| serine/threonine protein kinase [gamma proteobacterium NOR51-B] Length = 510 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 1/54 (1%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + CI C +C CPA+ + + ++ CI CG C CP Sbjct: 369 QPCIRCGMCAEACPAE-LLPQQLYWFARAKDNDSLEQHNLFDCIECGACSWVCP 421 >gi|167761220|ref|ZP_02433347.1| hypothetical protein CLOSCI_03625 [Clostridium scindens ATCC 35704] gi|167660886|gb|EDS05016.1| hypothetical protein CLOSCI_03625 [Clostridium scindens ATCC 35704] Length = 468 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 23/59 (38%), Gaps = 11/59 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 E+ CI C C CP QAI + +G I C+ CG C CP A Sbjct: 22 DEDACIGCINCIKYCPTQAIRVHNGKA-----------KITPEFCVDCGRCLRYCPHHA 69 >gi|153939302|ref|YP_001391031.1| sulfite/nitrite reductase family protein [Clostridium botulinum F str. Langeland] gi|152935198|gb|ABS40696.1| sulfite/nitrite reductase family protein [Clostridium botulinum F str. Langeland] gi|295319087|gb|ADF99464.1| sulfite/nitrite reductase family protein [Clostridium botulinum F str. 230613] Length = 284 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 34/109 (31%), Gaps = 20/109 (18%) Query: 12 FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71 F E F + L + P S G EE+C C +C Sbjct: 126 FGYELPSKFKITL---------VGCPNNCAKASINDIGIMGQAYVEFDEEKCKTCGICTK 176 Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C +A+T+E+ C+ CG C CP +A+ Sbjct: 177 SCRQKAVTVENKKIV-----------YKKDLCVNCGKCATVCPFEAMTI 214 >gi|154414518|ref|XP_001580286.1| Iron only hydrogenase large subunit, C-terminal domain containing protein [Trichomonas vaginalis G3] gi|121914502|gb|EAY19300.1| Iron only hydrogenase large subunit, C-terminal domain containing protein [Trichomonas vaginalis G3] Length = 559 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 21/87 (24%), Gaps = 15/87 (17%) Query: 32 TTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR 91 P + P+ +CI C LC C Sbjct: 105 WNYYQPKQGLPYPPQQNDSI-----QWDNTKCINCHLCIRACT----------NVQQIDS 149 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI CG C CPV A+ Sbjct: 150 IDSVTHAIDDSCIRCGHCLTVCPVAAL 176 >gi|323704227|ref|ZP_08115806.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermoanaerobacterium xylanolyticum LX-11] gi|323536293|gb|EGB26065.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermoanaerobacterium xylanolyticum LX-11] Length = 56 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 27/64 (42%), Gaps = 11/64 (17%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + CI+C C A CP AI +G Y++D CI CG C+ CP Sbjct: 1 MAHIITDECISCGACAAECPVDAIHEGTGK-----------YEVDADTCIDCGACEPVCP 49 Query: 115 VDAI 118 AI Sbjct: 50 TGAI 53 Score = 33.5 bits (75), Expect = 9.1, Method: Composition-based stats. Identities = 14/25 (56%), Positives = 15/25 (60%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEG 121 I +CI CG C CPVDAI EG Sbjct: 3 HIITDECISCGACAAECPVDAIHEG 27 >gi|312126857|ref|YP_003991731.1| hypothetical protein Calhy_0621 [Caldicellulosiruptor hydrothermalis 108] gi|311776876|gb|ADQ06362.1| protein of unknown function DUF362 [Caldicellulosiruptor hydrothermalis 108] Length = 375 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 11/65 (16%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 CI C C CPAQAI ++S +D+ KCI C C E CP AI Sbjct: 315 RNICIGCAECFNACPAQAIEMKSRKAY-----------VDLKKCIRCYCCHELCPAKAIK 363 Query: 120 EGPNF 124 +F Sbjct: 364 IKRSF 368 >gi|310780235|ref|YP_003968567.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ilyobacter polytropus DSM 2926] gi|309749558|gb|ADO84219.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ilyobacter polytropus DSM 2926] Length = 59 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 10/65 (15%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 Y + CIAC CE +CP I+ + ID CI CG C C Sbjct: 1 MAYRINQSECIACGACEPVCPVSCISEVVDGKRE----------IDESACIDCGACAGVC 50 Query: 114 PVDAI 118 PV+ I Sbjct: 51 PVECI 55 >gi|302335790|ref|YP_003800997.1| NADH ubiquinone oxidoreductase, F subunit, iron sulfur binding protein [Olsenella uli DSM 7084] gi|301319630|gb|ADK68117.1| NADH ubiquinone oxidoreductase, F subunit, iron sulfur binding protein [Olsenella uli DSM 7084] Length = 355 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 26/70 (37%), Gaps = 10/70 (14%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 A Y RC C C A C AIT + + ID CI CG C Sbjct: 278 KAFMTYHILVSRCTGCGDCLAACEEDAITGKDK----------FVHVIDQKACIQCGRCL 327 Query: 111 EACPVDAIVE 120 EAC A+V Sbjct: 328 EACGEGAVVM 337 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 16/40 (40%) Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 + + Y I + +C CG C AC DAI F Sbjct: 272 CPAGECKAFMTYHILVSRCTGCGDCLAACEEDAITGKDKF 311 >gi|300853352|ref|YP_003778336.1| ferredoxin [Clostridium ljungdahlii DSM 13528] gi|300433467|gb|ADK13234.1| ferredoxin [Clostridium ljungdahlii DSM 13528] Length = 57 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 11/63 (17%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 E C++C C + CPA AI+ ++ ID KCI CG C CP Sbjct: 1 MAYKITEDCVSCGSCASECPADAISQGD-----------SQFVIDPEKCIECGNCANVCP 49 Query: 115 VDA 117 V A Sbjct: 50 VGA 52 >gi|322436219|ref|YP_004218431.1| iron-sulfur cluster-binding protein [Acidobacterium sp. MP5ACTX9] gi|321163946|gb|ADW69651.1| iron-sulfur cluster-binding protein [Acidobacterium sp. MP5ACTX9] Length = 86 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 3/55 (5%) Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 C CP I + +G + ID ++CI CG C CPV AI G + Sbjct: 17 CVDACPVDCIHP---KKDENGYSDATQLFIDPVECIDCGACVPVCPVSAIYAGDD 68 >gi|326201014|ref|ZP_08190886.1| protein of unknown function DUF362 [Clostridium papyrosolvens DSM 2782] gi|325988582|gb|EGD49406.1| protein of unknown function DUF362 [Clostridium papyrosolvens DSM 2782] Length = 349 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 12/66 (18%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 R Y + CI C C CP AIT+++ P KC C C E C Sbjct: 293 RTYKVDDSLCIRCGACVDACPFHAITLKTIPEFDR------------DKCALCTCCMELC 340 Query: 114 PVDAIV 119 P +AI Sbjct: 341 PTNAIN 346 Score = 42.4 bits (98), Expect = 0.023, Method: Composition-based stats. Identities = 15/49 (30%), Positives = 17/49 (34%) Query: 78 ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 R Y +D CI CG C +ACP AI EF Sbjct: 277 PVYIGKYRKKYMDMLKRTYKVDDSLCIRCGACVDACPFHAITLKTIPEF 325 >gi|227824514|ref|ZP_03989346.1| 4Fe-4S ferredoxin [Acidaminococcus sp. D21] gi|226905013|gb|EEH90931.1| 4Fe-4S ferredoxin [Acidaminococcus sp. D21] Length = 57 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 11/65 (16%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + ++ CI C C CP AI+ ++G Y +D CI C C AC Sbjct: 1 MAHKIDQDACIGCGSCAGTCPVGAISEDNGK-----------YKVDEASCIDCDACTGAC 49 Query: 114 PVDAI 118 PV AI Sbjct: 50 PVGAI 54 Score = 33.9 bits (76), Expect = 6.9, Method: Composition-based stats. Identities = 13/27 (48%), Positives = 14/27 (51%) Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGP 122 + ID CI CG C CPV AI E Sbjct: 3 HKIDQDACIGCGSCAGTCPVGAISEDN 29 >gi|255659932|ref|ZP_05405341.1| conserved domain protein [Mitsuokella multacida DSM 20544] gi|260847803|gb|EEX67810.1| conserved domain protein [Mitsuokella multacida DSM 20544] Length = 56 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 22/64 (34%), Positives = 29/64 (45%), Gaps = 11/64 (17%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + CI+C C A CP +AI+ + Y+ID KC+ CG C CP Sbjct: 1 MAYKINDDCISCGSCAATCPVEAISEGAE-----------HYEIDADKCVECGACAAGCP 49 Query: 115 VDAI 118 V AI Sbjct: 50 VSAI 53 >gi|298528241|ref|ZP_07015645.1| NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding [Desulfonatronospira thiodismutans ASO3-1] gi|298511893|gb|EFI35795.1| NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding [Desulfonatronospira thiodismutans ASO3-1] Length = 375 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 19/60 (31%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+CI C C IC + + C +CG C CP A+ Sbjct: 146 EMEKCIMCGQCVRICDEIQGVGAIDFAYKGLWTKVCPPFEKDLDCEFCGQCVAVCPTGAL 205 >gi|119944507|ref|YP_942187.1| electron transport complex, RnfABCDGE type, C subunit [Psychromonas ingrahamii 37] gi|119863111|gb|ABM02588.1| electron transport complex, RnfABCDGE type, C subunit [Psychromonas ingrahamii 37] Length = 857 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 2/66 (3%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C C +CPA + + + ++ CI CG C CP I Sbjct: 388 CIRCGECSDVCPA-VLLPQQLLWYSKSQDHEKLDEYNLPSCIECGACAFVCP-SNIPLVE 445 Query: 123 NFEFAT 128 + A Sbjct: 446 YYRVAK 451 >gi|39995635|ref|NP_951586.1| nitroreductase family protein [Geobacter sulfurreducens PCA] gi|39982398|gb|AAR33859.1| nitroreductase family protein [Geobacter sulfurreducens PCA] Length = 274 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 7/69 (10%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI-VEG 121 C C C ++CP + + +G + +CI CG C+ CP A+ V+ Sbjct: 11 CTRCGACVSVCPLRIV------ELPEGNLPPRFTEEGAGRCIICGHCEAVCPTAALAVDD 64 Query: 122 PNFEFATET 130 P + A + Sbjct: 65 PRLDPAVYS 73 >gi|125974915|ref|YP_001038825.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium thermocellum ATCC 27405] gi|125715140|gb|ABN53632.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium thermocellum ATCC 27405] gi|316939126|gb|ADU73160.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium thermocellum DSM 1313] Length = 439 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 19/54 (35%), Gaps = 1/54 (1%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + CI C C CP + + G + M CI CG C CP Sbjct: 362 QACIRCGRCVRACPMNLLPLYLNNNSIRGNIEELNRYHVMD-CIECGSCAYVCP 414 Score = 37.4 bits (85), Expect = 0.77, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 25/114 (21%), Gaps = 18/114 (15%) Query: 12 FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71 F+ E++ K + T++ P K C + Sbjct: 269 FISEYIK----TGMPLIKKRVTVDGPSVKRP---GNVEVLIGTPISEVFSFCGGFGIVPK 321 Query: 72 ICPAQ------AITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEACP 114 A P T CI CG C ACP Sbjct: 322 KILMGGPMMGIAQYTLDTPVLKHTNALLAFDETTAVLPKEQACIRCGRCVRACP 375 >gi|330795628|ref|XP_003285874.1| dihydropyrimidine dehydrogenase [Dictyostelium purpureum] gi|325084179|gb|EGC37613.1| dihydropyrimidine dehydrogenase [Dictyostelium purpureum] Length = 944 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 19/75 (25%), Gaps = 8/75 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117 E++CI C C C + C C LC CPV Sbjct: 872 DEDKCINCGKCYMTCN-------DSGYQAIQFDGKTHIPLVTDLCTGCDLCLSVCPVPDC 924 Query: 118 IVEGPNFEFATETRQ 132 I P R Sbjct: 925 ITMVPRTTVYKPDRG 939 >gi|323142517|ref|ZP_08077333.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT 12067] gi|322412950|gb|EFY03853.1| 4Fe-4S binding domain protein [Phascolarctobacterium sp. YIT 12067] Length = 278 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 21/63 (33%), Positives = 23/63 (36%), Gaps = 11/63 (17%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 CI C C CP +AIT+ ID CI CG C CP AI Sbjct: 221 NACIGCTKCAQNCPMRAITMHERQA-----------TIDRRLCIICGKCAHGCPKQAICY 269 Query: 121 GPN 123 N Sbjct: 270 QSN 272 >gi|302336981|ref|YP_003802187.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Spirochaeta smaragdinae DSM 11293] gi|301634166|gb|ADK79593.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Spirochaeta smaragdinae DSM 11293] Length = 323 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 24/87 (27%), Positives = 32/87 (36%), Gaps = 20/87 (22%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 G C C+ C A+CP AI P + +CIYC C + CP + Sbjct: 246 EGANACTLCRSCYAVCPTSAIQFAPHP-------------VFTDRCIYCFNCVKLCPNGS 292 Query: 118 IVEGPNFEFATETRQELYYDKERLLNN 144 I A +E + K LL N Sbjct: 293 I-------VADLVSKERFLHKTSLLRN 312 >gi|291544451|emb|CBL17560.1| electron transport complex, RnfABCDGE type, C subunit [Ruminococcus sp. 18P13] Length = 426 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 24/75 (32%), Gaps = 2/75 (2%) Query: 41 GSTSPRFRGEHALRRYP-NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 AL Y N E CI C C CP + + + + + Sbjct: 333 TPIGKPNNAILALEHYQENPETACIRCGRCMHACPMR-LMPTELEKAYRTRDVAALQKLK 391 Query: 100 MIKCIYCGLCQEACP 114 + C+ CG C CP Sbjct: 392 LSLCMNCGSCTYVCP 406 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 2/39 (5%) Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERL 141 CI CG C ACP + E A TR K +L Sbjct: 356 CIRCGRCMHACP--MRLMPTELEKAYRTRDVAALQKLKL 392 >gi|262382202|ref|ZP_06075340.1| F420H2:quinone oxidoreductase [Bacteroides sp. 2_1_33B] gi|262297379|gb|EEY85309.1| F420H2:quinone oxidoreductase [Bacteroides sp. 2_1_33B] Length = 415 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 6/62 (9%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + + C C C CP I + + ++D CI CGLC++ C Sbjct: 1 MIHITDKRDCCGCNSCVQRCPKSCIRMREDDEG------FLYPEVDESVCIDCGLCEKVC 54 Query: 114 PV 115 PV Sbjct: 55 PV 56 >gi|288930543|ref|YP_003434603.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus placidus DSM 10642] gi|288892791|gb|ADC64328.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ferroglobus placidus DSM 10642] Length = 438 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 4/66 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR----YDIDMIKCIYCGLCQEACP 114 +C C +C A CP A + + + ID KC+ C LC + CP Sbjct: 68 DHIKCSYCGICYAFCPFNAFDFYINEKRVEKQELPLTLSGETRIDREKCVNCTLCFKVCP 127 Query: 115 VDAIVE 120 +AI Sbjct: 128 TNAISL 133 Score = 42.0 bits (97), Expect = 0.029, Method: Composition-based stats. Identities = 19/71 (26%), Positives = 26/71 (36%), Gaps = 2/71 (2%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R E + E+C C +C C + + ID KC YC Sbjct: 145 RNEGVEGKVEIDREKCNLCGICAEFCEV--FQMVEKEPHPEDVMPYEDILIDETKCDYCK 202 Query: 108 LCQEACPVDAI 118 LC+ CP +AI Sbjct: 203 LCERVCPEEAI 213 Score = 39.7 bits (91), Expect = 0.12, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 34/84 (40%), Gaps = 4/84 (4%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 EK + +C CKLCE +CP +AI +E D + D+ Sbjct: 177 EKEPHPEDVMPYEDILIDE---TKCDYCKLCERVCPEEAIRVEGKLIEADVSDYAFV-DV 232 Query: 99 DMIKCIYCGLCQEACPVDAIVEGP 122 + +C C C+E CP DAI Sbjct: 233 NNEECSRCSYCEEVCPYDAITVSK 256 Score = 37.8 bits (86), Expect = 0.55, Method: Composition-based stats. Identities = 24/82 (29%), Positives = 32/82 (39%), Gaps = 1/82 (1%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 E+ R E RR ++C C +C CP AI + G + Sbjct: 9 EENKFIFIQRAEDEERRLIYDYKKCNGCGICVYACPINAIELGPVHDIALGLE-MPPITL 67 Query: 99 DMIKCIYCGLCQEACPVDAIVE 120 D IKC YCG+C CP +A Sbjct: 68 DHIKCSYCGICYAFCPFNAFDF 89 Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats. Identities = 14/30 (46%), Positives = 18/30 (60%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 D KC CG+C ACP++AI GP + A Sbjct: 28 YDYKKCNGCGICVYACPINAIELGPVHDIA 57 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 4/62 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV----RYDIDMIKCIYCGLCQEACP 114 E+C+ C LC +CP AI+++ + D +R + +ID KC CG+C E C Sbjct: 112 DREKCVNCTLCFKVCPTNAISLDFKIKREDIPQRNEGVEGKVEIDREKCNLCGICAEFCE 171 Query: 115 VD 116 V Sbjct: 172 VF 173 Score = 35.5 bits (80), Expect = 2.3, Method: Composition-based stats. Identities = 21/95 (22%), Positives = 32/95 (33%), Gaps = 8/95 (8%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P++ + S GE L + C C +C R ++ R Sbjct: 247 CPYDAITVSKPIYGELYLYEPRMYRCDPVGCGACIKVCKHN--------RVWYVSKDKGR 298 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 + C YCG C+ +CP D I + F E Sbjct: 299 VHYNEKFCNYCGACENSCPYDLIAVKRDAVFTIEN 333 Score = 34.3 bits (77), Expect = 5.5, Method: Composition-based stats. Identities = 16/55 (29%), Positives = 20/55 (36%), Gaps = 3/55 (5%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 E C C CE +CP AIT+ Y D + CG C + C Sbjct: 233 NNEECSRCSYCEEVCPYDAITVSKPIYGELYLYEPRMYRCDP---VGCGACIKVC 284 >gi|283796028|ref|ZP_06345181.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium sp. M62/1] gi|291076236|gb|EFE13600.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium sp. M62/1] Length = 263 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 24/60 (40%), Gaps = 11/60 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI C LC C AI +++ ID KC CG C E CPV I Sbjct: 214 CDAGCIGCTLCTKQCEFDAIHMDNNVAV-----------IDYEKCTNCGKCAEKCPVKVI 262 Score = 37.4 bits (85), Expect = 0.69, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 5/70 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCH-----DGTRRTVRYDIDMIKCIYCGLCQEAC 113 +E+C+AC C A CP + I + H + CI C LC + C Sbjct: 169 DKEKCVACGKCVAACPQKLIELVPYKAEHLVQCNSHDKGPAVKAKCDAGCIGCTLCTKQC 228 Query: 114 PVDAIVEGPN 123 DAI N Sbjct: 229 EFDAIHMDNN 238 Score = 37.0 bits (84), Expect = 0.86, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 22/67 (32%), Gaps = 11/67 (16%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 C+ C A C AI + G +D KC+ CG C ACP Sbjct: 137 DKACSYGCMGFGSCVAACQFDAIHVVDGIAV-----------VDKEKCVACGKCVAACPQ 185 Query: 116 DAIVEGP 122 I P Sbjct: 186 KLIELVP 192 >gi|255656355|ref|ZP_05401764.1| indolepyruvate oxidoreductase subunit [Clostridium difficile QCD-23m63] gi|296450201|ref|ZP_06891962.1| isoquinoline 1-oxidoreductase, alpha subunit [Clostridium difficile NAP08] gi|296878582|ref|ZP_06902587.1| isoquinoline 1-oxidoreductase, alpha subunit [Clostridium difficile NAP07] gi|296260964|gb|EFH07798.1| isoquinoline 1-oxidoreductase, alpha subunit [Clostridium difficile NAP08] gi|296430389|gb|EFH16231.1| isoquinoline 1-oxidoreductase, alpha subunit [Clostridium difficile NAP07] Length = 595 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 10/60 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++CI CKLC +++G + +ID +C+ CG+C + CP AI Sbjct: 541 DHDKCIGCKLC----------LKTGCPALSFDKENKLSNIDRNQCVGCGVCAQVCPKQAI 590 >gi|150398095|ref|YP_001328562.1| formate dehydrogenase subunit alpha [Sinorhizobium medicae WSM419] gi|150029610|gb|ABR61727.1| formate dehydrogenase, alpha subunit [Sinorhizobium medicae WSM419] Length = 959 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 27/85 (31%), Gaps = 3/85 (3%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMI 101 + + + +CI C C C T SG + D Sbjct: 160 KWMPKDESNPYFTYDPAKCIVCSRCVRACEEVQGTFALTISGRGFDSRVSAGMNEDFVSS 219 Query: 102 KCIYCGLCQEACPVDAIVEGPNFEF 126 +C+ CG C +ACP + E E Sbjct: 220 ECVSCGACVQACPTATLTEKSVIEI 244 >gi|71906705|ref|YP_284292.1| 4Fe-4S ferredoxin, iron-sulfur binding [Dechloromonas aromatica RCB] gi|71846326|gb|AAZ45822.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Dechloromonas aromatica RCB] Length = 451 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 15/46 (32%), Positives = 19/46 (41%) Query: 70 EAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 EA+C D T +V YD CI CG+C + CP Sbjct: 215 EAVCQHMCPYSRFQGVMFDETTASVSYDQQRSDCIDCGICVQVCPT 260 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 20/89 (22%), Positives = 26/89 (29%), Gaps = 25/89 (28%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 Y CI C +C +CP D +CI CGLC +AC Sbjct: 239 VSYDQQRSDCIDCGICVQVCPTG----------------IDIRDGLQYQCINCGLCVDAC 282 Query: 114 ---------PVDAIVEGPNFEFATETRQE 133 P I E A + + Sbjct: 283 DEVMLKIGSPTGLIRFASERELAGRPKAQ 311 >gi|73669778|ref|YP_305793.1| coenzyme F420-reducing hydrogenase subunit gamma [Methanosarcina barkeri str. Fusaro] gi|72396940|gb|AAZ71213.1| coenzyme F420-reducing hydrogenase, gamma subunit [Methanosarcina barkeri str. Fusaro] Length = 274 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 11/62 (17%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L + CI C +C A CP +AIT E G D+ CI CG C A Sbjct: 194 LMDDVINQGLCIGCGICAASCPVRAITHEFGK-----------PQGDLNLCIKCGSCYGA 242 Query: 113 CP 114 CP Sbjct: 243 CP 244 Score = 38.5 bits (88), Expect = 0.33, Method: Composition-based stats. Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNF 124 I+ CI CG+C +CPV AI F Sbjct: 199 INQGLCIGCGICAASCPVRAI--THEF 223 >gi|51244959|ref|YP_064843.1| fusion protein of heterodisulfide reductase, subunit A (HdrA) and hydrogenase, delta subunit (HydD) [Desulfotalea psychrophila LSv54] gi|50875996|emb|CAG35836.1| probable fusion protein of heterodisulfide reductase, subunit A (HdrA) and hydrogenase, delta subunit (HydD) [Desulfotalea psychrophila LSv54] Length = 753 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 10/63 (15%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 +RC CK C CP A+ + + +C CG+C ACP I Sbjct: 544 MQRCTQCKRCTEECPFGALDDDEKGTPLP----------NPTRCRRCGICMGACPERIIG 593 Query: 120 EGP 122 Sbjct: 594 FKD 596 >gi|119385650|ref|YP_916705.1| iron-sulfur cluster binding protein [Paracoccus denitrificans PD1222] gi|119376245|gb|ABL71009.1| iron-sulfur cluster binding protein [Paracoccus denitrificans PD1222] Length = 471 Score = 43.2 bits (100), Expect = 0.012, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 23/105 (21%), Gaps = 10/105 (9%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA----Q 76 + K + P E L RCI C C C Sbjct: 270 YTTFHAGPKRPGDADGPEEMHIVLVDNGRTKMLADEFREMLRCIRCGACMNHCVVYRQIG 329 Query: 77 AITIESGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEACPV 115 G+ T D C G C E CPV Sbjct: 330 GHAYGGTYPGPMGSVLTPVLDGLAASRDLPNACTMNGRCAEVCPV 374 >gi|332297497|ref|YP_004439419.1| electron transport complex, RnfABCDGE type, B subunit [Treponema brennaborense DSM 12168] gi|332180600|gb|AEE16288.1| electron transport complex, RnfABCDGE type, B subunit [Treponema brennaborense DSM 12168] Length = 271 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 24/80 (30%), Gaps = 7/80 (8%) Query: 57 PNGEERCIACKLCEAICPAQ-------AITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 +C C +C A CP A + T + CI CG C Sbjct: 164 HVDYAKCTGCGMCVAECPQGLFAKVDSARKGAVARCSNRSTNKAPIIKQCKTGCIKCGKC 223 Query: 110 QEACPVDAIVEGPNFEFATE 129 + ACP A+V Sbjct: 224 ERACPEHALVVTNGIPLVDY 243 Score = 40.9 bits (94), Expect = 0.058, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 27/76 (35%), Gaps = 11/76 (14%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R + + CI C CE CP A+ + +G +D KC CG Sbjct: 202 RSTNKAPIIKQCKTGCIKCGKCERACPEHALVVTNGIPL-----------VDYGKCTSCG 250 Query: 108 LCQEACPVDAIVEGPN 123 C + CP + N Sbjct: 251 ECIKGCPTHVLELVEN 266 Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats. Identities = 15/56 (26%), Positives = 21/56 (37%), Gaps = 10/56 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 CI C A+C A+ ++ H +D KC CG+C CP Sbjct: 136 CSYGCIGFADCVAVCKFDALAMKDDGLPH----------VDYAKCTGCGMCVAECP 181 >gi|332295879|ref|YP_004437802.1| formate dehydrogenase, alpha subunit [Thermodesulfobium narugense DSM 14796] gi|332178982|gb|AEE14671.1| formate dehydrogenase, alpha subunit [Thermodesulfobium narugense DSM 14796] Length = 911 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 21/111 (18%), Positives = 40/111 (36%), Gaps = 11/111 (9%) Query: 13 LKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 L++ F + + F P E + F ++C+ C+ C Sbjct: 112 LQDLAYQFGIKISQFLDKNEAFYTPKETAWDTNSFIQF--------DPQKCVLCRRCIGA 163 Query: 73 CPAQA-ITIESGPRCHDGTRRTVRYDIDMI--KCIYCGLCQEACPVDAIVE 120 C Q+ I + + ++I + C +C C +ACP A++E Sbjct: 164 CENQSLIEAIGIAMRGYRSTISTPFNIPLEQTNCQFCAECVQACPTGALIE 214 >gi|322806449|emb|CBZ04018.1| ferredoxin [Clostridium botulinum H04402 065] Length = 273 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 53/153 (34%), Gaps = 31/153 (20%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRY--PN 58 M I R ++ K ++ F T P+ K +G+ R P Sbjct: 145 MDIVRTLADEIYTKIISEKI---IKTVFVKGNT---PYRKYYMPKDEKGQPIDIRKVKPK 198 Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI CKLC +CP +I E + + CI C C + CPV A Sbjct: 199 TNNNCINCKLCANLCPIGSIDFEDVTKLN-------------GICIKCCACIKKCPVGA- 244 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 F+ + L + KE L N R+ E Sbjct: 245 ---KYFDDSGY----LKHKKE--LENNFRYRKE 268 >gi|241758780|ref|ZP_04756893.1| iron-sulfur cluster-binding protein [Neisseria flavescens SK114] gi|241320988|gb|EER57201.1| iron-sulfur cluster-binding protein [Neisseria flavescens SK114] Length = 483 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 18/65 (27%), Gaps = 10/65 (15%) Query: 62 RCIACKLCEAICPA-----QAITIES-----GPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 +CI C C CP A + G C CG C E Sbjct: 317 QCIRCGACMNHCPVYTRIGGAAYGTTYPGPIGEIISPHLLGLDATRDLPTACTMCGACVE 376 Query: 112 ACPVD 116 CPV Sbjct: 377 VCPVR 381 >gi|291296029|ref|YP_003507427.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Meiothermus ruber DSM 1279] gi|290470988|gb|ADD28407.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Meiothermus ruber DSM 1279] Length = 321 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 5/74 (6%) Query: 47 FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 +R + E C C +C +CP +A+ E P + + +++ C C Sbjct: 228 YRAQAVRWPRIAVAEGCTLCPVCSNVCPTKAVERERAPGGEEYVLK-----LNVSACTGC 282 Query: 107 GLCQEACPVDAIVE 120 G C E+CP I Sbjct: 283 GACLESCPPQVISL 296 Score = 38.5 bits (88), Expect = 0.34, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 25/55 (45%), Gaps = 11/55 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C+ +CP AI +ES +ID +KC CGLC CP A+ Sbjct: 36 CDKCQQVCPHGAINLES-----------FTAEIDEVKCTSCGLCTAVCPGLALEF 79 >gi|257066577|ref|YP_003152833.1| hydrogenase, Fe-only [Anaerococcus prevotii DSM 20548] gi|256798457|gb|ACV29112.1| hydrogenase, Fe-only [Anaerococcus prevotii DSM 20548] Length = 577 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 3/68 (4%) Query: 59 GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQEACPV 115 +CI C+ CE +C Q + + T ++ + C +CG C CP Sbjct: 147 DPNKCILCRRCETMCNEVQTVGALAEVGRGFYTHVGSTFNRSMFETTCTFCGQCLSVCPT 206 Query: 116 DAIVEGPN 123 A+ E N Sbjct: 207 GALTEKSN 214 >gi|261380945|ref|ZP_05985518.1| iron-sulfur cluster-binding protein [Neisseria subflava NJ9703] gi|284796202|gb|EFC51549.1| iron-sulfur cluster-binding protein [Neisseria subflava NJ9703] Length = 484 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 18/65 (27%), Gaps = 10/65 (15%) Query: 62 RCIACKLCEAICPA-----QAITIES-----GPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 +CI C C CP A + G C CG C E Sbjct: 317 QCIRCGACMNHCPVYTRIGGAAYGTTYPGPIGEIISPHLLGLDATRDLPTACTMCGACVE 376 Query: 112 ACPVD 116 CPV Sbjct: 377 VCPVR 381 >gi|242309240|ref|ZP_04808395.1| subunit of 2-oxoglutarate oxidoreductase [Helicobacter pullorum MIT 98-5489] gi|239524281|gb|EEQ64147.1| subunit of 2-oxoglutarate oxidoreductase [Helicobacter pullorum MIT 98-5489] Length = 103 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 3/70 (4%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E RC AC LC ++CP+ + + G V I+ CI CG C+ CP Sbjct: 13 WVNESRCKACDLCVSVCPSGTLAMCLDEHKVLGKMVKV---INPESCIGCGECELHCPDF 69 Query: 117 AIVEGPNFEF 126 AI EF Sbjct: 70 AIAVADRKEF 79 >gi|169335902|ref|ZP_02863095.1| hypothetical protein ANASTE_02337 [Anaerofustis stercorihominis DSM 17244] gi|169258640|gb|EDS72606.1| hypothetical protein ANASTE_02337 [Anaerofustis stercorihominis DSM 17244] Length = 202 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 27/84 (32%), Positives = 37/84 (44%), Gaps = 13/84 (15%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 +P + + S F GE + E CI CK C +CP AI +G Sbjct: 129 KHPIYRQTLS--FGGEKIKDKGYFINETCINCKKCFNLCPQSAIYELNG----------- 175 Query: 95 RYDIDMIKCIYCGLCQEACPVDAI 118 +I C++CGLC E CPV A+ Sbjct: 176 IMNIKNENCLHCGLCYENCPVKAV 199 >gi|188586494|ref|YP_001918039.1| Electron transfer flavoprotein alpha/beta-subunit [Natranaerobius thermophilus JW/NM-WN-LF] gi|179351181|gb|ACB85451.1| Electron transfer flavoprotein alpha/beta-subunit [Natranaerobius thermophilus JW/NM-WN-LF] Length = 410 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 11/26 (42%), Positives = 14/26 (53%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPN 123 I KC C LC +ACP +AI + Sbjct: 5 ILTDKCKGCALCVDACPFEAIEMKDD 30 Score = 38.9 bits (89), Expect = 0.20, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 12/63 (19%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++C C LC CP +AI ++ + C CG C E+C AI++ Sbjct: 8 DKCKGCALCVDACPFEAIEMKDDIAVLN------------ESCTNCGACIESCKFGAIIK 55 Query: 121 GPN 123 Sbjct: 56 EEE 58 >gi|160934322|ref|ZP_02081709.1| hypothetical protein CLOLEP_03193 [Clostridium leptum DSM 753] gi|156866995|gb|EDO60367.1| hypothetical protein CLOLEP_03193 [Clostridium leptum DSM 753] Length = 368 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 11/79 (13%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 +E+C+ C++C C AI+ +I+ C CG C C DAI Sbjct: 194 QEQCVGCRVCAKSCAHDAISFTDKKA-----------NINHSLCAGCGRCIGVCHRDAIK 242 Query: 120 EGPNFEFATETRQELYYDK 138 + F ++ Y K Sbjct: 243 PADDESFDILNQKVAEYTK 261 >gi|114705752|ref|ZP_01438655.1| Iron-sulfur cluster binding protein [Fulvimarina pelagi HTCC2506] gi|114538598|gb|EAU41719.1| Iron-sulfur cluster binding protein [Fulvimarina pelagi HTCC2506] Length = 483 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 29/104 (27%), Gaps = 10/104 (9%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-QAIT 79 + K + P E + L RCI C C CP A+ Sbjct: 272 YTTFSTGPKRTEDPDGPDEYHVILLDNGRTNMLGTEFEDMLRCIRCGACMNHCPVYHAVG 331 Query: 80 IESGPRCHDGTR--RTVRYDIDMIKC-------IYCGLCQEACP 114 + + G I + +CG C+E CP Sbjct: 332 GHAYGWVYPGPMGAVLTPALIGVEDGKLLPNASTFCGRCEEVCP 375 Score = 34.3 bits (77), Expect = 5.7, Method: Composition-based stats. Identities = 9/17 (52%), Positives = 11/17 (64%) Query: 100 MIKCIYCGLCQEACPVD 116 M++CI CG C CPV Sbjct: 311 MLRCIRCGACMNHCPVY 327 >gi|222053345|ref|YP_002535707.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32] gi|221562634|gb|ACM18606.1| NADH dehydrogenase (quinone) [Geobacter sp. FRC-32] Length = 637 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 10/62 (16%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L Y E+C AC C CPA AI + + +D KC CG C +A Sbjct: 556 LFSYYIEPEKCQACTSCGKKCPAGAIEG----------GKNQIHMVDQAKCTKCGACLQA 605 Query: 113 CP 114 CP Sbjct: 606 CP 607 Score = 34.7 bits (78), Expect = 4.0, Method: Composition-based stats. Identities = 13/44 (29%), Positives = 16/44 (36%) Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 G + Y I+ KC C C + CP AI G N Sbjct: 543 HMEGKCPAFTCKSLFSYYIEPEKCQACTSCGKKCPAGAIEGGKN 586 >gi|15678771|ref|NP_275888.1| hypothetical protein MTH745 [Methanothermobacter thermautotrophicus str. Delta H] gi|2621834|gb|AAB85249.1| unknown (contains ferredoxin domain) [Methanothermobacter thermautotrophicus str. Delta H] Length = 273 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 20/71 (28%), Positives = 24/71 (33%), Gaps = 12/71 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C+ C CE C AI + KC+ CG C E CP AI Sbjct: 202 EESSCVLCGRCEEACFTGAIAVGKELEHD------------ARKCLICGRCAERCPEGAI 249 Query: 119 VEGPNFEFATE 129 + E E Sbjct: 250 KIIMDPEAVDE 260 >gi|328953250|ref|YP_004370584.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfobacca acetoxidans DSM 11109] gi|328453574|gb|AEB09403.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfobacca acetoxidans DSM 11109] Length = 300 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 26/97 (26%), Positives = 34/97 (35%), Gaps = 14/97 (14%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 L ++ E CI C CE CP Q I I+ P CIYC C Sbjct: 189 EMLPKHHFNAETCIQCYECEDHCPVQGIDIKIDPPR------------LQEPCIYCWRCI 236 Query: 111 EACPVDAI--VEGPNFEFATETRQELYYDKERLLNNG 145 CP +I GP A + +++ NG Sbjct: 237 NICPTLSITADWGPLLAMAPTNYVRYKKELDKVAKNG 273 >gi|319937321|ref|ZP_08011728.1| HymC protein [Coprobacillus sp. 29_1] gi|319807687|gb|EFW04280.1| HymC protein [Coprobacillus sp. 29_1] Length = 582 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 3/68 (4%) Query: 59 GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115 +CI C C A C Q + I T+ +D + C+ CG C CPV Sbjct: 144 NTAKCILCGRCVAACKKHQGLGILGFMERGFKTKVGPVFDRSLNDVNCMQCGQCINVCPV 203 Query: 116 DAIVEGPN 123 A+ E Sbjct: 204 GALQEKEE 211 >gi|261403810|ref|YP_003248034.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus vulcanius M7] gi|261370803|gb|ACX73552.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus vulcanius M7] Length = 164 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%) Query: 63 CIACKLCEAICPAQAITIESGP--RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 CI C+ C +CP +AI + + + + I+ KC+YC C + CPV ++ Sbjct: 54 CIGCEGCANVCPTKAIEMIPIEPIKITENYVKDKIPKINAEKCVYCLYCHDFCPVFSVF 112 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 9/27 (33%), Positives = 10/27 (37%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPN 123 + CI C C CP AI P Sbjct: 48 TVIEELCIGCEGCANVCPTKAIEMIPI 74 >gi|225571973|ref|ZP_03780837.1| hypothetical protein RUMHYD_00267 [Blautia hydrogenotrophica DSM 10507] gi|225040506|gb|EEG50752.1| hypothetical protein RUMHYD_00267 [Blautia hydrogenotrophica DSM 10507] Length = 742 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 6/53 (11%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 E C C C+ ICP AI++E+ +D KCI CGLCQ+ C Sbjct: 381 EECYGCYACKEICPKDAISMETDEEGFYYP------SVDHEKCISCGLCQKVC 427 Score = 35.1 bits (79), Expect = 3.5, Method: Composition-based stats. Identities = 11/28 (39%), Positives = 14/28 (50%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFE 125 I +C C C+E CP DAI + E Sbjct: 378 ILKEECYGCYACKEICPKDAISMETDEE 405 >gi|224371828|ref|YP_002605992.1| Glutamate synthase [Desulfobacterium autotrophicum HRM2] gi|223694545|gb|ACN17828.1| Glutamate synthase [Desulfobacterium autotrophicum HRM2] Length = 544 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 28/84 (33%), Gaps = 15/84 (17%) Query: 54 RRYPNGEERCIACKLCEAICPAQA---------------ITIESGPRCHDGTRRTVRYDI 98 + ++RC C C A+CP QA +E D + Sbjct: 19 WQIDWKKDRCTLCGQCTAVCPVQAIELAVFRKRNLVTSIHRVEDNRSTFDTFYGIKQKTT 78 Query: 99 DMIKCIYCGLCQEACPVDAIVEGP 122 CI C +C CP DAI P Sbjct: 79 IAEACIGCAMCSMVCPNDAIEPNP 102 Score = 39.7 bits (91), Expect = 0.14, Method: Composition-based stats. Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 6/35 (17%) Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 +C CG C CPV AI E A ++ L Sbjct: 26 DRCTLCGQCTAVCPVQAI------ELAVFRKRNLV 54 >gi|206895457|ref|YP_002246544.1| ferredoxin 2 [Coprothermobacter proteolyticus DSM 5265] gi|206738074|gb|ACI17152.1| ferredoxin 2 [Coprothermobacter proteolyticus DSM 5265] Length = 450 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 11/59 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 EE+C C C CPA+AI + +G I CI CG C ACP A Sbjct: 15 DEEKCKGCTNCIKRCPAEAIRVRNGKA-----------RIIDQLCIDCGECIRACPNHA 62 >gi|171316162|ref|ZP_02905386.1| formate dehydrogenase, alpha subunit [Burkholderia ambifaria MEX-5] gi|171098671|gb|EDT43466.1| formate dehydrogenase, alpha subunit [Burkholderia ambifaria MEX-5] Length = 983 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 20/69 (28%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T + +C+ CG C Sbjct: 187 YFTYDPSKCIVCNRCVRACEETQGTFALTIAARGFESRVVAGESESFMASECVSCGACVA 246 Query: 112 ACPVDAIVE 120 ACP + E Sbjct: 247 ACPTATLQE 255 >gi|167759017|ref|ZP_02431144.1| hypothetical protein CLOSCI_01364 [Clostridium scindens ATCC 35704] gi|167663424|gb|EDS07554.1| hypothetical protein CLOSCI_01364 [Clostridium scindens ATCC 35704] Length = 263 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 28/83 (33%), Gaps = 11/83 (13%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P+++ + CI CK+CE +C A+ + Sbjct: 191 VPYDQKHLVQCSSKDKGKDVMKACSVGCIGCKMCEKVCEFDAVKVVDNIAH--------- 241 Query: 96 YDIDMIKCIYCGLCQEACPVDAI 118 ID KC CG C + CP I Sbjct: 242 --IDPEKCTNCGACAQKCPKKII 262 >gi|148655927|ref|YP_001276132.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Roseiflexus sp. RS-1] gi|148568037|gb|ABQ90182.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Roseiflexus sp. RS-1] Length = 565 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 23/65 (35%), Gaps = 12/65 (18%) Query: 61 ERCIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RC C C ICP A+ S R CI C C +ACP DAI Sbjct: 56 TRCNHCANPPCVRICPVTAMYQRSDGIVEFDPRV----------CIGCKACLQACPYDAI 105 Query: 119 VEGPN 123 P Sbjct: 106 YIDPE 110 Score = 42.0 bits (97), Expect = 0.024, Method: Composition-based stats. Identities = 16/88 (18%), Positives = 27/88 (30%), Gaps = 17/88 (19%) Query: 59 GEERCIACKLCEAICPAQA-----ITIESGPRCHDGTRRTVRYDIDMIKCIYCGL--CQE 111 +CI C C C ++ + GT R + +C +C C Sbjct: 9 DHRKCIGCHACSTACKSENEVPLGVYRTWVKYVEAGTFPDTRRYFQVTRCNHCANPPCVR 68 Query: 112 ACPVDAIVEGPNFEFATETRQELYYDKE 139 CPV A+ R + + + Sbjct: 69 ICPVTAM----------YQRSDGIVEFD 86 Score = 42.0 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 36/122 (29%), Gaps = 12/122 (9%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCL-RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 R + V + F + + P T+ R + + P Sbjct: 35 RTWVKYVEAGTFPDTRRYFQVTRCNHCANPPCVRICP----VTAMYQRSDGIVEFDP--- 87 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 CI CK C CP AI I+ R +K C+ CP AI+ Sbjct: 88 RVCIGCKACLQACPYDAIYIDPETRSAAKCHFCSHRIELGLK----PACEVVCPEQAIIS 143 Query: 121 GP 122 G Sbjct: 144 GD 145 >gi|51244861|ref|YP_064745.1| Fe-S oxidoreductase [Desulfotalea psychrophila LSv54] gi|50875898|emb|CAG35738.2| probable Fe-S oxidoreductase [Desulfotalea psychrophila LSv54] Length = 495 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 32/96 (33%), Gaps = 5/96 (5%) Query: 24 LRYFFKAKTTINYPFEKGSTSPRFRGEH-ALRRYPNGEERCIACKLCEAICP----AQAI 78 L + K TI + G+ AL P+ C+ C C A CP Sbjct: 63 LNHVHKDPCTIQQEAQPILEPMTLDGKKSALAVDPSWASSCLTCGTCAAACPIAGVDGLD 122 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + G + KC CG C+E+CP Sbjct: 123 PRKIVRMAVLGMDEELINSTWPWKCTMCGKCEESCP 158 >gi|88803596|ref|ZP_01119121.1| Pyridine nucleotide-disulphide oxidoreductase domain protein [Polaribacter irgensii 23-P] gi|88780608|gb|EAR11788.1| Pyridine nucleotide-disulphide oxidoreductase domain protein [Polaribacter irgensii 23-P] Length = 540 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 10/67 (14%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R + R NG +CI+C C C + +I C+ CG Sbjct: 449 RFKSRFRITTNG-GQCISCGNCSTYCEQGIDVRAYAQKGE---------NIVRSSCVGCG 498 Query: 108 LCQEACP 114 +C CP Sbjct: 499 ICSAVCP 505 >gi|317125936|ref|YP_004100048.1| polysulphide reductase NrfD [Intrasporangium calvum DSM 43043] gi|315590024|gb|ADU49321.1| Polysulphide reductase NrfD [Intrasporangium calvum DSM 43043] Length = 508 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 23/73 (31%), Gaps = 22/73 (30%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG---------LC 109 +RCI CK C CP AI I++ KC C C Sbjct: 85 DGDRCIGCKSCMQACPYDAIYIDAN-------------THTAAKCNLCAHRVDEGMEPAC 131 Query: 110 QEACPVDAIVEGP 122 CP +I G Sbjct: 132 VVVCPTHSIWVGD 144 Score = 42.4 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 22/93 (23%), Positives = 31/93 (33%), Gaps = 10/93 (10%) Query: 33 TINYPFEKGSTSPRFRGEHALRR---YPNGEERC--IACKLCEAICPAQAITIESGPRCH 87 T+ E +FR +P+ + C C A ++ P Sbjct: 19 TVACKTEHEVPLGQFRTWVKYVDTGTFPDTTRSFGVMRCNHC-----TDAPCVKICPTQA 73 Query: 88 DGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 R D D +CI C C +ACP DAI Sbjct: 74 LFKRDDGIVDFDGDRCIGCKSCMQACPYDAIYI 106 Score = 41.2 bits (95), Expect = 0.049, Method: Composition-based stats. Identities = 18/100 (18%), Positives = 29/100 (29%), Gaps = 22/100 (22%) Query: 56 YPNGEERCIACKLCEAICPAQA-----ITIESGPRCHDGTRRTVRYDIDMIKCIYC--GL 108 + + CI C C C + GT +++C +C Sbjct: 5 FAIDQRTCIGCHACTVACKTEHEVPLGQFRTWVKYVDTGTFPDTTRSFGVMRCNHCTDAP 64 Query: 109 CQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRW 148 C + CP A+ R + D + GDR Sbjct: 65 CVKICPTQAL----------FKRDDGIVDFD-----GDRC 89 >gi|291548566|emb|CBL24828.1| Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits [Ruminococcus torques L2-14] Length = 254 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 12/77 (15%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 +R + P C +C+LC A CP+ AI ++ + KCI Sbjct: 166 PYREYGTIPLIPGASHTCGSCRLCAAKCPSGAIPSDNPKQTDK------------DKCIS 213 Query: 106 CGLCQEACPVDAIVEGP 122 C C CP + P Sbjct: 214 CMRCISVCPTHSRKLNP 230 >gi|281418619|ref|ZP_06249638.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium thermocellum JW20] gi|281407703|gb|EFB37962.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium thermocellum JW20] Length = 439 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 15/54 (27%), Positives = 19/54 (35%), Gaps = 1/54 (1%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + CI C C CP + + G + M CI CG C CP Sbjct: 362 QACIRCGRCVRACPMNLLPLYLNNNSIRGNIEELNRYHVMD-CIECGSCAYVCP 414 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 18/114 (15%), Positives = 25/114 (21%), Gaps = 18/114 (15%) Query: 12 FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71 F+ E++ K + T++ P K C + Sbjct: 269 FISEYIK----TGMPLIKKRVTVDGPSVKRP---GNVEVLIGTPISEVFSFCGGFDIVPK 321 Query: 72 ICPAQ------AITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEACP 114 A P T CI CG C ACP Sbjct: 322 KILMGGPMMGIAQYTLDTPVLKHTNALLAFDETTAVLPKEQACIRCGRCVRACP 375 >gi|255009556|ref|ZP_05281682.1| ferredoxin [Bacteroides fragilis 3_1_12] gi|313147332|ref|ZP_07809525.1| ferredoxin [Bacteroides fragilis 3_1_12] gi|313136099|gb|EFR53459.1| ferredoxin [Bacteroides fragilis 3_1_12] Length = 290 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 8/81 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------DMIKCIYCGLCQ 110 EE+C AC C CP I + + + + + CI CG C Sbjct: 169 DEEKCTACGACVKACPKAIIELRAKGKKSRRVYVSCVNKDKGAVARKACTVSCIGCGKCV 228 Query: 111 EACPVDAIVEGPNFEFATETR 131 + CP +AI N + + Sbjct: 229 KTCPFEAITLENNLAYIDYNK 249 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 9/62 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C C A C AI + ++D KC CG C +ACP I Sbjct: 138 CSYGCLGCGDCVAACQFDAIHMNPETGLP---------EVDEEKCTACGACVKACPKAII 188 Query: 119 VE 120 Sbjct: 189 EL 190 Score = 40.5 bits (93), Expect = 0.086, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 26/62 (41%), Gaps = 11/62 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C C CP +AIT+E+ ID KC C C E CP + I Sbjct: 217 CTVSCIGCGKCVKTCPFEAITLENNLAY-----------IDYNKCKSCRKCVEVCPQNTI 265 Query: 119 VE 120 +E Sbjct: 266 IE 267 >gi|291296268|ref|YP_003507666.1| dihydroorotate dehydrogenase family protein [Meiothermus ruber DSM 1279] gi|290471227|gb|ADD28646.1| dihydroorotate dehydrogenase family protein [Meiothermus ruber DSM 1279] Length = 461 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 23/80 (28%), Gaps = 18/80 (22%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-----------------IDMI 101 ++CI C LC C A RYD + Sbjct: 341 NPDKCIRCNLCYVACNDTAHQCIDLVDAAGNRVEPYRYDPRSNGKHQAVSTRPQPVVRED 400 Query: 102 KCIYCGLCQEACPVD-AIVE 120 C+ C LC CPVD I Sbjct: 401 DCVGCRLCHNVCPVDGCIEM 420 >gi|225405381|ref|ZP_03760570.1| hypothetical protein CLOSTASPAR_04601 [Clostridium asparagiforme DSM 15981] gi|225043083|gb|EEG53329.1| hypothetical protein CLOSTASPAR_04601 [Clostridium asparagiforme DSM 15981] Length = 275 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 36/108 (33%), Gaps = 12/108 (11%) Query: 15 EFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP 74 E + F K T++ + + F + R E C+ C C +CP Sbjct: 156 ERFAGLIREGKPFPGPKVTLDGRVKSSLVNRLFYPLYVNARGYYAAEACVGCGRCVKLCP 215 Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 I +E+G + KC C C CPV A+ G Sbjct: 216 LNNIRLENGRP------------VWGRKCTQCMACICGCPVRAVEYGK 251 >gi|221272036|sp|A8XKG6|DPYD_CAEBR RecName: Full=Probable dihydropyrimidine dehydrogenase [NADP+]; Short=DHPDHase; Short=DPD; AltName: Full=Dihydrothymine dehydrogenase; AltName: Full=Dihydrouracil dehydrogenase gi|309359452|emb|CAP33140.2| CBR-DPYD-1 protein [Caenorhabditis briggsae AF16] Length = 1053 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 22/65 (33%), Gaps = 7/65 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117 + CI C C C +SG + T + + C C LC CP+ Sbjct: 954 DHDMCINCGKCYMTCN------DSGYQAITFDAVTHQPHVTEDDCTGCTLCYSVCPIPEC 1007 Query: 118 IVEGP 122 I P Sbjct: 1008 IQMVP 1012 >gi|171185525|ref|YP_001794444.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Thermoproteus neutrophilus V24Sta] gi|170934737|gb|ACB39998.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermoproteus neutrophilus V24Sta] Length = 284 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 30/76 (39%), Gaps = 9/76 (11%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 RR E+C AC LC +CP QAI ++ KC CGLC EAC Sbjct: 180 RRPAIDVEKCTACFLCAGVCPIQAIEVDEDEVMLKVDGY---------KCAECGLCAEAC 230 Query: 114 PVDAIVEGPNFEFATE 129 P AI E Sbjct: 231 PEGAIKLVEGGEPVET 246 Score = 33.9 bits (76), Expect = 7.8, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 11/50 (22%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 C+ C +CPA A+ +E + C+ CG+C ACP Sbjct: 20 CRKCVDVCPAGALYVEGRFVKAE-----------PSLCVGCGVCMSACPT 58 >gi|160935571|ref|ZP_02082946.1| hypothetical protein CLOBOL_00461 [Clostridium bolteae ATCC BAA-613] gi|158441315|gb|EDP19025.1| hypothetical protein CLOBOL_00461 [Clostridium bolteae ATCC BAA-613] Length = 351 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 29/98 (29%), Gaps = 7/98 (7%) Query: 25 RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84 ++ P + + G + + +RCI C C C A Sbjct: 141 SHYHIKVAVAGCPNDCVKANFNDFGIMGINKQVYDIDRCIGCGSCVDACKHHAT------ 194 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + + D D C+ CG C CP A G Sbjct: 195 -GVLSLNQNGKIDKDACCCVGCGECSLICPTGAWTRGD 231 >gi|154505523|ref|ZP_02042261.1| hypothetical protein RUMGNA_03060 [Ruminococcus gnavus ATCC 29149] gi|153794181|gb|EDN76601.1| hypothetical protein RUMGNA_03060 [Ruminococcus gnavus ATCC 29149] Length = 531 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 16/82 (19%), Positives = 25/82 (30%), Gaps = 3/82 (3%) Query: 55 RYPNGEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQE 111 +CI C C C Q + I + +D + C+ CG C+ Sbjct: 91 CIVRDPNKCILCGDCVRTCEEIQGLGILDFAFRGSKMQVMPAFDRAMSQTDCVGCGQCRV 150 Query: 112 ACPVDAIVEGPNFEFATETRQE 133 CP AI + + Sbjct: 151 VCPTGAISIKQDIAPVWTALAD 172 >gi|154497187|ref|ZP_02035883.1| hypothetical protein BACCAP_01480 [Bacteroides capillosus ATCC 29799] gi|150273586|gb|EDN00714.1| hypothetical protein BACCAP_01480 [Bacteroides capillosus ATCC 29799] Length = 891 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 19/62 (30%), Positives = 24/62 (38%), Gaps = 5/62 (8%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 C C C AI + D R + D KC+ CG C E CPV+A+ Sbjct: 253 YAICNCCG-----CGCYAIRNAAYYNAPDMVRSNYVAETDSEKCVACGQCVENCPVNALK 307 Query: 120 EG 121 G Sbjct: 308 LG 309 Score = 33.9 bits (76), Expect = 7.3, Method: Composition-based stats. Identities = 10/35 (28%), Positives = 14/35 (40%) Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 + CI CG C C DAI + T ++ Sbjct: 827 NQEMCIGCGQCTTKCKFDAIHLVKKYNVTYNTYEQ 861 >gi|220932905|ref|YP_002509813.1| pyruvate ferredoxin oxidoreductase, delta subunit [Halothermothrix orenii H 168] gi|219994215|gb|ACL70818.1| pyruvate ferredoxin oxidoreductase, delta subunit [Halothermothrix orenii H 168] Length = 110 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 26/63 (41%), Gaps = 10/63 (15%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E+CI C LC CP AI +E G ID C CG+C CPV A+ Sbjct: 39 EKCIQCLLCHVYCPDIAIDVEEGKVIG----------IDYNHCKGCGICANQCPVQALEM 88 Query: 121 GPN 123 Sbjct: 89 ISE 91 >gi|315636782|ref|ZP_07892008.1| 2-oxoglutarate:acceptor oxidoreductase subunit OorD [Arcobacter butzleri JV22] gi|315478908|gb|EFU69615.1| 2-oxoglutarate:acceptor oxidoreductase subunit OorD [Arcobacter butzleri JV22] Length = 107 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 28/95 (29%), Positives = 40/95 (42%), Gaps = 11/95 (11%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E RC AC C ++CPA + + G+ TV CI C C+ ACP Sbjct: 13 WVDENRCKACDKCVSVCPAGVLAMRQEVHSTLGSMITVV---HPESCIGCSDCELACPDF 69 Query: 117 AIVEGPNFEF--------ATETRQELYYDKERLLN 143 AI EF A R+++ +K R+L+ Sbjct: 70 AIFVADRKEFKFAKLSEDAKVRREKIIENKYRILD 104 >gi|332654077|ref|ZP_08419821.1| conserved domain protein [Ruminococcaceae bacterium D16] gi|332517163|gb|EGJ46768.1| conserved domain protein [Ruminococcaceae bacterium D16] Length = 56 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 11/59 (18%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 CI+C C CP AI + Y+I+ C+ CG C ++CP+ AI +G Sbjct: 9 CISCGSCADACPVGAIAQGAD-----------HYEINAGACLDCGSCADSCPMSAISQG 56 Score = 33.9 bits (76), Expect = 7.7, Method: Composition-based stats. Identities = 12/24 (50%), Positives = 15/24 (62%) Query: 101 IKCIYCGLCQEACPVDAIVEGPNF 124 CI CG C +ACPV AI +G + Sbjct: 7 DACISCGSCADACPVGAIAQGADH 30 >gi|283853883|ref|ZP_06371097.1| nitroreductase [Desulfovibrio sp. FW1012B] gi|283570725|gb|EFC18771.1| nitroreductase [Desulfovibrio sp. FW1012B] Length = 300 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 11/62 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C C C A+CP+ + G R CI CG C+ CP A+ Sbjct: 9 DAEACQGCGACVALCPSGVLAFAGG-----------RLVARQTGCIGCGHCEAVCPAGAV 57 Query: 119 VE 120 Sbjct: 58 TL 59 >gi|317152494|ref|YP_004120542.1| fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein [Desulfovibrio aespoeensis Aspo-2] gi|316942745|gb|ADU61796.1| fumarate reductase/succinate dehydrogenase flavoprotein domain protein [Desulfovibrio aespoeensis Aspo-2] Length = 676 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 23/69 (33%), Gaps = 9/69 (13%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + CI CK+C +C AI + R I+ C CG C CP Sbjct: 577 WINPDICIGCKVCIGLCAYSAIEFDE---------RRQVSVINEAMCKGCGSCAGYCPSG 627 Query: 117 AIVEGPNFE 125 A E Sbjct: 628 AAQIKHFNE 636 Score = 37.8 bits (86), Expect = 0.59, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 26/88 (29%), Gaps = 17/88 (19%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-------IDMIKC-----I 104 C C C CP +A + + ID C Sbjct: 238 YINASICTGCGACLEKCPTKAPSEFNEGLGTRKAIYRNSPQAVPNTPVIDGTICRKITKD 297 Query: 105 YCGLCQEACPVDAIVEGPNFEFATETRQ 132 CGLCQ+ CP AI E+R+ Sbjct: 298 KCGLCQQICPTGAIDYTMQ-----ESRE 320 Score = 34.3 bits (77), Expect = 6.2, Method: Composition-based stats. Identities = 9/25 (36%), Positives = 10/25 (40%) Query: 93 TVRYDIDMIKCIYCGLCQEACPVDA 117 I+ C CG C E CP A Sbjct: 234 HKPRYINASICTGCGACLEKCPTKA 258 >gi|227823603|ref|YP_002827576.1| NAD-dependent formate dehydrogenase alpha subunit [Sinorhizobium fredii NGR234] gi|227342605|gb|ACP26823.1| NAD-dependent formate dehydrogenase alpha subunit [Sinorhizobium fredii NGR234] Length = 959 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 25/75 (33%), Gaps = 3/75 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T SG + D +C+ CG C + Sbjct: 170 YFTFDPAKCIVCSRCVRACEEVQGTFALTISGRGFDSKVSAGMNEDFVSSECVSCGACVQ 229 Query: 112 ACPVDAIVEGPNFEF 126 ACP + E E Sbjct: 230 ACPTATLTEKSVIEI 244 >gi|260588480|ref|ZP_05854393.1| protein HymB [Blautia hansenii DSM 20583] gi|331082243|ref|ZP_08331370.1| hypothetical protein HMPREF0992_00294 [Lachnospiraceae bacterium 6_1_63FAA] gi|260540955|gb|EEX21524.1| protein HymB [Blautia hansenii DSM 20583] gi|330403037|gb|EGG82602.1| hypothetical protein HMPREF0992_00294 [Lachnospiraceae bacterium 6_1_63FAA] Length = 624 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 10/68 (14%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 A+R+Y E C C C CP AIT Y I+ CI C C++ Sbjct: 564 AMRKYVINPEFCKGCGKCAKNCPVGAITGVRKEA----------YHINPNLCIKCDSCRD 613 Query: 112 ACPVDAIV 119 C DA+ Sbjct: 614 NCAFDAVY 621 Score = 40.5 bits (93), Expect = 0.083, Method: Composition-based stats. Identities = 12/40 (30%), Positives = 15/40 (37%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 I +Y I+ C CG C + CPV AI Sbjct: 551 HIVEHKCAAKNCTAMRKYVINPEFCKGCGKCAKNCPVGAI 590 >gi|255659464|ref|ZP_05404873.1| ferredoxin-type protein [Mitsuokella multacida DSM 20544] gi|260848013|gb|EEX68020.1| ferredoxin-type protein [Mitsuokella multacida DSM 20544] Length = 494 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 26/88 (29%), Positives = 34/88 (38%), Gaps = 2/88 (2%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY-CGLCQEACPVDAI 118 C +C LC + CP+ + + SGP D C+Y C LC ACP AI Sbjct: 346 YTHCTSCHLCVSRCPSGVL-LSSGPENGALHLLQPHMDFSQGYCVYNCNLCSAACPTGAI 404 Query: 119 VEGPNFEFATETRQELYYDKERLLNNGD 146 E YDK++ L D Sbjct: 405 RPLSLAEKQQTKIGLARYDKQQCLITRD 432 Score = 40.5 bits (93), Expect = 0.088, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 13/66 (19%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +RCI C CE CP+ I ++G ID +C+ C C CP DA+ Sbjct: 217 DADRCIHCGACERTCPSACIDAKTG-------------VIDSSRCVDCFDCLTLCPKDAL 263 Query: 119 VEGPNF 124 + Sbjct: 264 HFSRSH 269 Score = 40.1 bits (92), Expect = 0.12, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 23/65 (35%), Gaps = 8/65 (12%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD--AIVEG 121 I C C C QAIT+ +D CI CG C+ CP + AI Sbjct: 434 IVCGNCARHCLTQAITMVEDRDG------RSYPVVDDAACIGCGSCEYHCPAEPSAIHII 487 Query: 122 PNFEF 126 E Sbjct: 488 GIAEL 492 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 14/25 (56%) Query: 94 VRYDIDMIKCIYCGLCQEACPVDAI 118 R ID +CI+CG C+ CP I Sbjct: 212 FRPVIDADRCIHCGACERTCPSACI 236 >gi|157374047|ref|YP_001472647.1| FAD linked oxidase domain-containing protein [Shewanella sediminis HAW-EB3] gi|157316421|gb|ABV35519.1| FAD linked oxidase domain protein [Shewanella sediminis HAW-EB3] Length = 942 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 9/83 (10%) Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139 + + D + KC+ CG C++ CP A+ P AT R+ Sbjct: 522 NDDPKIHVKDIKPCPVVDDFVDKCLECGFCEKTCPTSALNFTPRQRIATL-RE-----IA 575 Query: 140 RLLNNGDRWESEIVRNIVTDSPY 162 RL +GD + + + Y Sbjct: 576 RLEQSGD---QQAADEMRASAKY 595 Score = 34.7 bits (78), Expect = 4.3, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 18/76 (23%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPR-----------------CHDGTRRTVRYDID 99 + ++C+ C CE CP A+ R D R + +YD+ Sbjct: 539 DDFVDKCLECGFCEKTCPTSALNFTPRQRIATLREIARLEQSGDQQAADEMRASAKYDVI 598 Query: 100 MIKCIYCGLCQEACPV 115 C C LC ACPV Sbjct: 599 -DTCAACQLCTIACPV 613 >gi|53713890|ref|YP_099882.1| ferredoxin [Bacteroides fragilis YCH46] gi|60682098|ref|YP_212242.1| ferredoxin [Bacteroides fragilis NCTC 9343] gi|253567118|ref|ZP_04844569.1| ferredoxin [Bacteroides sp. 3_2_5] gi|265764233|ref|ZP_06092801.1| ferredoxin [Bacteroides sp. 2_1_16] gi|52216755|dbj|BAD49348.1| Electron transport complex protein RnfB [Bacteroides fragilis YCH46] gi|60493532|emb|CAH08319.1| putative electron transport complex protein [Bacteroides fragilis NCTC 9343] gi|251944242|gb|EES84751.1| ferredoxin [Bacteroides sp. 3_2_5] gi|263256841|gb|EEZ28187.1| ferredoxin [Bacteroides sp. 2_1_16] gi|301163568|emb|CBW23119.1| putative electron transport complex protein [Bacteroides fragilis 638R] Length = 290 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 8/81 (9%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--------DMIKCIYCGLCQ 110 EE+C AC C CP I + + + + + CI CG C Sbjct: 169 DEEKCTACGACVKACPKAIIELRAKGKKSRRVYVSCVNKDKGAVARKACTVSCIGCGKCV 228 Query: 111 EACPVDAIVEGPNFEFATETR 131 + CP +AI N + + Sbjct: 229 KTCPFEAITLENNLAYIDYNK 249 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 9/62 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C C A C AI + ++D KC CG C +ACP I Sbjct: 138 CSYGCLGCGDCVAACQFDAIHMNPETGLP---------EVDEEKCTACGACVKACPKAII 188 Query: 119 VE 120 Sbjct: 189 EL 190 Score = 40.9 bits (94), Expect = 0.066, Method: Composition-based stats. Identities = 21/62 (33%), Positives = 25/62 (40%), Gaps = 11/62 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C C CP +AIT+E+ ID KC C C E CP I Sbjct: 217 CTVSCIGCGKCVKTCPFEAITLENNLAY-----------IDYNKCKSCRKCVEVCPQHTI 265 Query: 119 VE 120 +E Sbjct: 266 IE 267 >gi|307279197|ref|ZP_07560255.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX0860] gi|306504322|gb|EFM73534.1| formate dehydrogenase, alpha subunit [Enterococcus faecalis TX0860] Length = 906 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 3/92 (3%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV 94 F +G P + + + + E+CI C+ C +C + + + Sbjct: 133 FTEGKRMPCHQEDTSNPFFSYDPEKCIMCRRCARVCQLRQGRDVLSIANRGFETKMMPSY 192 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 D C CG C +CP A+ E+ Sbjct: 193 GQAFDQSICESCGNCVSSCPTGALTAKDTKEY 224 >gi|326791181|ref|YP_004309002.1| electron transport complex, RnfABCDGE type subunit beta [Clostridium lentocellum DSM 5427] gi|326541945|gb|ADZ83804.1| electron transport complex, RnfABCDGE type, B subunit [Clostridium lentocellum DSM 5427] Length = 285 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 11/56 (19%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI C +C C AIT+ I+M KC+ CG C+ CP AI Sbjct: 217 CIGCGICVKQCEEGAITLVDN-----------HAVIEMTKCVSCGKCEAKCPTKAI 261 Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 25/71 (35%), Gaps = 5/71 (7%) Query: 59 GEERCIACKLCEAICPAQA-----ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 E+C+ C C+ CP ++ C + + CI CG+C + C Sbjct: 168 HPEKCVGCGACKNACPRHIIEILPMSTTYHVNCISKDKGKEVKAACEVGCIGCGICVKQC 227 Query: 114 PVDAIVEGPNF 124 AI N Sbjct: 228 EEGAITLVDNH 238 Score = 37.8 bits (86), Expect = 0.55, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 11/64 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C+ C AIT+E G I KC+ CG C+ ACP I Sbjct: 139 CAYGCLGYGSCQKACTFGAITMEEGLPI-----------IHPEKCVGCGACKNACPRHII 187 Query: 119 VEGP 122 P Sbjct: 188 EILP 191 >gi|326791176|ref|YP_004308997.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium lentocellum DSM 5427] gi|326541940|gb|ADZ83799.1| electron transport complex, RnfABCDGE type, C subunit [Clostridium lentocellum DSM 5427] Length = 439 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 14/54 (25%), Positives = 19/54 (35%), Gaps = 1/54 (1%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 C+ C C +CP + + R D + CI CG C CP Sbjct: 367 THCMHCGKCVTVCPMH-LIPNTLHRHALHEHYDKFMDYYGMDCIECGCCSYTCP 419 >gi|284047868|ref|YP_003398207.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Acidaminococcus fermentans DSM 20731] gi|283952089|gb|ADB46892.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Acidaminococcus fermentans DSM 20731] Length = 1171 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 26/78 (33%), Gaps = 14/78 (17%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAI-----TIESGPRCHDGTRR---------TVRY 96 A+ E CI C C +CP AI T E +G + Sbjct: 676 IAINVPEWNIENCIQCNQCAIMCPHAAIRPFLLTDEEVKNAPEGLQTKPALGAKGLNFCI 735 Query: 97 DIDMIKCIYCGLCQEACP 114 + + C C C +ACP Sbjct: 736 TVSPMDCQGCSNCVDACP 753 >gi|268611225|ref|ZP_06144952.1| heterodisulfide reductase, subunit a [Ruminococcus flavefaciens FD-1] Length = 663 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 2/66 (3%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGP--RCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + E C C CE +CP AIT T ++ C CG C ACP Sbjct: 581 HSNELMCNGCSSCEKVCPYGAITYVDKEFRMPDRTTAIRRVASVNPAVCQGCGACTVACP 640 Query: 115 VDAIVE 120 A+ Sbjct: 641 SGAMDL 646 Score = 34.7 bits (78), Expect = 5.0, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 24/78 (30%), Gaps = 13/78 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGP--------RCHDGTRRTVRYDIDMIKCI-----Y 105 E +C C LC CP + + E ID C+ Sbjct: 239 DETKCTGCGLCTEKCPMKKVPNEFNMGLDNRTAIYIPFAQAVPKVATIDPNYCMMLKNGK 298 Query: 106 CGLCQEACPVDAIVEGPN 123 CG+C + C V AI Sbjct: 299 CGVCSKVCSVGAIDYKQE 316 >gi|257468686|ref|ZP_05632780.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Fusobacterium ulcerans ATCC 49185] gi|317062941|ref|ZP_07927426.1| predicted protein [Fusobacterium ulcerans ATCC 49185] gi|313688617|gb|EFS25452.1| predicted protein [Fusobacterium ulcerans ATCC 49185] Length = 56 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 24/64 (37%), Gaps = 11/64 (17%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 Y ++ CI C CE CP AI+ + C+ CG C CP Sbjct: 1 MYVIDKDACIGCGACEGTCPVGAISSTDDGKYGI-----------SDSCVDCGACAGGCP 49 Query: 115 VDAI 118 V AI Sbjct: 50 VSAI 53 Score = 37.8 bits (86), Expect = 0.53, Method: Composition-based stats. Identities = 13/29 (44%), Positives = 15/29 (51%) Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 Y ID CI CG C+ CPV AI + Sbjct: 1 MYVIDKDACIGCGACEGTCPVGAISSTDD 29 >gi|224370287|ref|YP_002604451.1| RnfC2 [Desulfobacterium autotrophicum HRM2] gi|223693004|gb|ACN16287.1| RnfC2 [Desulfobacterium autotrophicum HRM2] Length = 426 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 19/57 (33%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + CI C C +CPA + D+ CI CG+C C Sbjct: 343 HVSDYPCINCGKCIRVCPANIPVNLLVRYLEASMYEEAADNFDLKSCIECGMCSYVC 399 >gi|169347288|ref|ZP_02866226.1| hypothetical protein CLOSPI_00003 [Clostridium spiroforme DSM 1552] gi|169293905|gb|EDS76038.1| hypothetical protein CLOSPI_00003 [Clostridium spiroforme DSM 1552] Length = 1172 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 24/87 (27%), Gaps = 22/87 (25%) Query: 61 ERCIACKLCEAICPA------------------QAITIESGPRCHDGTRRTVRYDIDMIK 102 E CI C C +CP P + R + Sbjct: 688 ENCIQCNNCVMVCPHATVRAFLIDGEEMADLPEDISDDVLKPIGKNVDGLVYRIQVSPDN 747 Query: 103 CIYCGLCQEACP----VDAIVEGPNFE 125 C+ CGLC CP A+ P E Sbjct: 748 CVGCGLCVTECPGKKGEKALEMVPVKE 774 >gi|167830015|ref|ZP_02461486.1| formate dehydrogenase, alpha subunit [Burkholderia pseudomallei 9] gi|226197869|ref|ZP_03793443.1| formate dehydrogenase, NAD-dependent, alpha subunit [Burkholderia pseudomallei Pakistan 9] gi|225930057|gb|EEH26070.1| formate dehydrogenase, NAD-dependent, alpha subunit [Burkholderia pseudomallei Pakistan 9] Length = 984 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 25/85 (29%), Gaps = 10/85 (11%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T + + +C+ CG C Sbjct: 187 YFSYDPSKCIVCNRCVRACEETQGTFALTIASRGFESRVAASAGEAFMDSECVSCGACVA 246 Query: 112 ACPVDAIVE-------GPNFEFATE 129 ACP ++E P E T Sbjct: 247 ACPTATLIEKSVARLGQPEHEIVTT 271 >gi|149193853|ref|ZP_01870951.1| carbon monoxide-induced hydrogenase, iron-sulfur cluster-binding subunit [Caminibacter mediatlanticus TB-2] gi|149135806|gb|EDM24284.1| carbon monoxide-induced hydrogenase, iron-sulfur cluster-binding subunit [Caminibacter mediatlanticus TB-2] Length = 140 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 24/66 (36%), Gaps = 7/66 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C AC CE +CP+ AI I + C +C C+ CP AI Sbjct: 10 DANLCTACATCEEVCPSGAIHITEDESS-------FIHTTWYNTCCFCANCEFFCPTGAI 62 Query: 119 VEGPNF 124 ++ Sbjct: 63 KLTNDY 68 >gi|83589245|ref|YP_429254.1| 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate [Moorella thermoacetica ATCC 39073] gi|83572159|gb|ABC18711.1| 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate [Moorella thermoacetica ATCC 39073] Length = 89 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 15/75 (20%), Positives = 25/75 (33%), Gaps = 7/75 (9%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G + R ++C C C CP I ++ + +++ C CG+ Sbjct: 18 GSWRIMRPEVDHDQCTRCGTCAKYCPLDIIDVDKE-------SKVQSVTMNLDYCKGCGI 70 Query: 109 CQEACPVDAIVEGPN 123 C CP I Sbjct: 71 CANVCPRKCIKMVSE 85 >gi|39995208|ref|NP_951159.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Geobacter sulfurreducens PCA] gi|39981970|gb|AAR33432.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Geobacter sulfurreducens PCA] gi|298504213|gb|ADI82936.1| pyruvate:ferredoxin/flavodoxin oxidoreductase [Geobacter sulfurreducens KN400] Length = 1195 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 30/98 (30%), Gaps = 24/98 (24%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES---------- 82 T FEK + + E+ CI C +C +CP I +++ Sbjct: 674 TATSQFEKRNIAVEIPVW--------DEQLCIQCGICSFVCPHATIRMKAYDASALAGAP 725 Query: 83 ------GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + + + + C CG C CP Sbjct: 726 AAFKSVDCKIPEFKGQKFTIQVAPEDCTGCGACVHNCP 763 Score = 35.1 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 8/18 (44%), Positives = 9/18 (50%) Query: 103 CIYCGLCQEACPVDAIVE 120 CI CG+C CP I Sbjct: 696 CIQCGICSFVCPHATIRM 713 >gi|147668873|ref|YP_001213691.1| hydrogenase, Fe-only [Dehalococcoides sp. BAV1] gi|146269821|gb|ABQ16813.1| NAD(P)-dependent iron-only hydrogenase catalytic subunit [Dehalococcoides sp. BAV1] Length = 573 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 23/65 (35%), Gaps = 3/65 (4%) Query: 59 GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115 +CIAC C +C Q + T D M C CG C CPV Sbjct: 143 DPNKCIACGRCVRVCHDIQTVNAIGFINKGPDTMVATSMDRGMGNVACANCGQCILVCPV 202 Query: 116 DAIVE 120 AI E Sbjct: 203 GAIKE 207 >gi|238796067|ref|ZP_04639578.1| hypothetical protein ymoll0001_4030 [Yersinia mollaretii ATCC 43969] gi|238720012|gb|EEQ11817.1| hypothetical protein ymoll0001_4030 [Yersinia mollaretii ATCC 43969] Length = 693 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 7/79 (8%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI-KCIYC------GLCQEA 112 +E+CI CK C CP +T+ + R Y KC C C + Sbjct: 96 QEKCIGCKTCMIACPFGMMTVVTETVQPASHRLADAYQRTEAQKCDLCIDQPDGPACIKT 155 Query: 113 CPVDAIVEGPNFEFATETR 131 CP A+ ++ R Sbjct: 156 CPTQALTLVDQHYLLSQQR 174 Score = 35.8 bits (81), Expect = 1.8, Method: Composition-based stats. Identities = 18/91 (19%), Positives = 24/91 (26%), Gaps = 20/91 (21%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEE-------RCIACK--LCEAICPAQAITIESGPRCH 87 P F+G C C+ C + CP AI + Sbjct: 35 PEYFTPRLKVFKGRQGFNDPHGVNGTLSATAVFCHHCEDAPCASTCPNGAIVEMNN---- 90 Query: 88 DGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + KCI C C ACP + Sbjct: 91 -------SIQVIQEKCIGCKTCMIACPFGMM 114 >gi|226947086|ref|YP_002802159.1| RnfABCDGE type electron transport complex subunit B [Azotobacter vinelandii DJ] gi|17865301|gb|AAL47173.1|AF450501_3 RnfB [Azotobacter vinelandii] gi|226722013|gb|ACO81184.1| Electron transport complex, RnfABCDGE type, B subunit [Azotobacter vinelandii DJ] Length = 174 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 10/73 (13%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 +CI C C CP AI SG + + C CG C++ACP D ++ Sbjct: 107 SQCIGCTRCYRACPTDAIVGASGQ----------VHVVLEDACTGCGKCRDACPEDCVLL 156 Query: 121 GPNFEFATETRQE 133 P + R + Sbjct: 157 IPQEQTLDTWRWD 169 >gi|325663172|ref|ZP_08151622.1| hypothetical protein HMPREF0490_02363 [Lachnospiraceae bacterium 4_1_37FAA] gi|331086762|ref|ZP_08335839.1| hypothetical protein HMPREF0987_02142 [Lachnospiraceae bacterium 9_1_43BFAA] gi|325470626|gb|EGC73856.1| hypothetical protein HMPREF0490_02363 [Lachnospiraceae bacterium 4_1_37FAA] gi|330409928|gb|EGG89363.1| hypothetical protein HMPREF0987_02142 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 56 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 11/64 (17%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C++C CEA CP AI+ + Y+I+ C+ CG C CP Sbjct: 1 MAHVISDECVSCGACEAECPVGAISQGAD-----------HYEINADACVDCGACAAQCP 49 Query: 115 VDAI 118 AI Sbjct: 50 TGAI 53 >gi|325185181|emb|CCA19671.1| hypothetical protein ALNC14_058140 [Albugo laibachii Nc14] Length = 627 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 16/56 (28%), Positives = 23/56 (41%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 K C C + G C + T ++ I CI CG+C + CP +AI Sbjct: 19 KKCRQECKKSCPVVRMGNLCIEVTPKSKLAFISEDLCIGCGICVKKCPFEAINIIN 74 >gi|289432125|ref|YP_003461998.1| hydrogenase, Fe-only [Dehalococcoides sp. GT] gi|288945845|gb|ADC73542.1| hydrogenase, Fe-only [Dehalococcoides sp. GT] Length = 573 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 23/65 (35%), Gaps = 3/65 (4%) Query: 59 GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115 +CIAC C +C Q + T D M C CG C CPV Sbjct: 143 DPNKCIACGRCVRVCHDIQTVNAIGFINKGPDTMVATSMDRGMGNVACANCGQCILVCPV 202 Query: 116 DAIVE 120 AI E Sbjct: 203 GAIKE 207 >gi|226290257|gb|EEH45741.1| translation initiation factor RLI1 [Paracoccidioides brasiliensis Pb18] Length = 620 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 27/76 (35%), Gaps = 4/76 (5%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 RC K C C + +G C + T + I CI CG+C + CP AI Sbjct: 28 DPRRCKP-KKCRQECKKSCPVVRTGKLCIEVTPESKIAFISERLCIGCGICPKKCPFGAI 86 Query: 119 VEGP---NFEFATETR 131 N E R Sbjct: 87 HIINLPTNLETQVTHR 102 >gi|188997098|ref|YP_001931349.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfurihydrogenibium sp. YO3AOP1] gi|188932165|gb|ACD66795.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sulfurihydrogenibium sp. YO3AOP1] Length = 363 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 24/142 (16%), Positives = 43/142 (30%), Gaps = 25/142 (17%) Query: 2 RIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEE 61 + ++ VS + E + L T + EK S Sbjct: 206 KPYKNIVSEKVIPEKRKILYTTLSKI--GPTDKCFEVEKIEFSSD---------KWIDNS 254 Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 +C C +C +CP A+T + ++ CI C +C + CP I Sbjct: 255 KCTNCSICYNVCPTGALTPDDSK---------LKVLFSPTLCIKCRICHDVCPEKCIHLE 305 Query: 122 PNFEFATETRQELYYDKERLLN 143 ++ K ++L Sbjct: 306 EKLYL-----EDFISGKYKVLA 322 >gi|168333731|ref|ZP_02691984.1| nitroreductase family protein [Epulopiscium sp. 'N.t. morphotype B'] Length = 255 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 11/72 (15%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 E +CI C C+ CP+ I I++ + CI CG CQ CP Sbjct: 1 MINIDENKCIGCSKCQKSCPSGLIEIQNKKAIIS----------NTGACILCGHCQAVCP 50 Query: 115 VDAIV-EGPNFE 125 AI G ++E Sbjct: 51 SSAISLLGIDYE 62 >gi|162452617|ref|YP_001614984.1| hypothetical protein sce4341 [Sorangium cellulosum 'So ce 56'] gi|161163199|emb|CAN94504.1| hypothetical protein sce4341 [Sorangium cellulosum 'So ce 56'] Length = 785 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 26/130 (20%), Positives = 34/130 (26%), Gaps = 15/130 (11%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 P G+ + C C C CP + I + P Sbjct: 376 HCESPACMIECPTGAIGKDTGGEVFIRDALCTGCGACAKACPWENIAMAPRPAAAPRPGG 435 Query: 93 TVRYDIDMIKCIYCG-----LCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDR 147 DI +KC C C +ACP +I E + R L G R Sbjct: 436 AGFADI-AVKCDLCRDYDGPACVKACPTGSIFRVNPAEEIADVRD---------LLGGAR 485 Query: 148 WESEIVRNIV 157 E E Sbjct: 486 REQERAAAPR 495 Score = 42.0 bits (97), Expect = 0.026, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 22/63 (34%), Gaps = 12/63 (19%) Query: 60 EERCIACKL--CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 C C+ C CP AI ++G I C CG C +ACP + Sbjct: 371 PNSCQHCESPACMIECPTGAIGKDTGGEVF----------IRDALCTGCGACAKACPWEN 420 Query: 118 IVE 120 I Sbjct: 421 IAM 423 >gi|134277066|ref|ZP_01763781.1| formate dehydrogenase, alpha subunit [Burkholderia pseudomallei 305] gi|134250716|gb|EBA50795.1| formate dehydrogenase, alpha subunit [Burkholderia pseudomallei 305] Length = 984 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 25/85 (29%), Gaps = 10/85 (11%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T + + +C+ CG C Sbjct: 187 YFSYDPSKCIVCNRCVRACEETQGTFALTIASRGFESRVAASAGEAFMDSECVSCGACVA 246 Query: 112 ACPVDAIVE-------GPNFEFATE 129 ACP ++E P E T Sbjct: 247 ACPTATLIEKSVARLGQPEHEIVTT 271 >gi|73748099|ref|YP_307338.1| putative [Fe] hydrogenase, large subunit HymC [Dehalococcoides sp. CBDB1] gi|73659815|emb|CAI82422.1| putative [Fe] hydrogenase, large subunit HymC [Dehalococcoides sp. CBDB1] Length = 573 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 23/65 (35%), Gaps = 3/65 (4%) Query: 59 GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115 +CIAC C +C Q + T D M C CG C CPV Sbjct: 143 DPNKCIACGRCVRVCHDIQTVNAIGFINKGPDTMVATSMDRGMGNVACANCGQCILVCPV 202 Query: 116 DAIVE 120 AI E Sbjct: 203 GAIKE 207 >gi|86147961|ref|ZP_01066265.1| electron transport complex protein RnfC [Vibrio sp. MED222] gi|85834286|gb|EAQ52440.1| electron transport complex protein RnfC [Vibrio sp. MED222] Length = 902 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 37/105 (35%), Gaps = 9/105 (8%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 CI C C CPA + + ++++ CI CG C CP I Sbjct: 377 ECIRCSACAEACPAS-LLPQQLQWHAKANELDKCEELNIKDCIECGACAFVCP-SEIPLV 434 Query: 122 PNFEFAT---ETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + A +TR++ ER R+E E + D R Sbjct: 435 QYYRQAKAEIKTRKDEAAAAER---AKIRFE-EKNARMERDKAER 475 >gi|85704751|ref|ZP_01035852.1| dihydropyrimidine dehydrogenase [Roseovarius sp. 217] gi|85670569|gb|EAQ25429.1| dihydropyrimidine dehydrogenase [Roseovarius sp. 217] Length = 434 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 20/63 (31%), Gaps = 8/63 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP-VDA 117 ++ CI C C A C E + + +C+ C LC CP Sbjct: 343 NQDDCINCGRCYAAC-------EDTSHQAIAMSEDRVFTVKDDECVACNLCVNVCPIEGC 395 Query: 118 IVE 120 I Sbjct: 396 ITM 398 >gi|332795922|ref|YP_004457422.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Acidianus hospitalis W1] gi|332693657|gb|AEE93124.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Acidianus hospitalis W1] Length = 419 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 7/100 (7%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 N + C C C CP +++ V + KC+ C C C DA Sbjct: 279 NMNDNCTLCGACIRKCPTRSLKYNIKDN-------NVFIEFTPSKCVGCNKCVNVCEEDA 331 Query: 118 IVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIV 157 I ++ +++ Y E + + Sbjct: 332 ITVNKSYNYSSLHEDTFYITAEDEVVRCKKCGRPFDNKKK 371 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 25/56 (44%), Gaps = 11/56 (19%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 C C CP +A++I G ID KC YCGLC +CPV AI Sbjct: 115 CNQCVTSCPQKAMSIVEGKVV-----------IDENKCTYCGLCAASCPVGAINLS 159 >gi|325958349|ref|YP_004289815.1| ABC transporter-like protein [Methanobacterium sp. AL-21] gi|325329781|gb|ADZ08843.1| ABC transporter related protein [Methanobacterium sp. AL-21] Length = 591 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 1/67 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +RC K C +C + +T + + C CG+C CP AI Sbjct: 8 DHDRCQP-KKCNYVCIEYCPGVRMEEDTITIDAKTKKPILSEELCSGCGICTNRCPFKAI 66 Query: 119 VEGPNFE 125 E Sbjct: 67 NIINLPE 73 >gi|307107097|gb|EFN55341.1| hypothetical protein CHLNCDRAFT_134349 [Chlorella variabilis] Length = 1242 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 25/115 (21%), Positives = 36/115 (31%), Gaps = 22/115 (19%) Query: 29 KAKTTINYP---FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI----- 80 K ++ P F G+T+ R + N C C +C ICP A+ Sbjct: 694 KLPVSVFTPGGFFPPGTTAVEKRSIAQVVPAWN-SANCTQCNICSFICPHAAVRPALATP 752 Query: 81 -----------ESGPRCHDGTRRTVRYDID--MIKCIYCGLCQEACPVDAIVEGP 122 + + +Y I C C LC ACP A+ P Sbjct: 753 EELAGAPAGFATVPIKGGGPALKGFQYRIQVSPTDCTGCELCVHACPDYALTSTP 807 >gi|266619301|ref|ZP_06112236.1| putative pyruvate formate-lyase activating enzyme [Clostridium hathewayi DSM 13479] gi|288869169|gb|EFD01468.1| putative pyruvate formate-lyase activating enzyme [Clostridium hathewayi DSM 13479] Length = 289 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 26/63 (41%), Gaps = 4/63 (6%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 P ++ C AC +C CPA A++IE G R + CI C C CP Sbjct: 41 HNPETQQLCRACGICAGQCPAGALSIEEGGGESSEKRIVW----NEKLCIQCDNCIRVCP 96 Query: 115 VDA 117 A Sbjct: 97 YFA 99 >gi|255527702|ref|ZP_05394559.1| dihydroorotate dehydrogenase family protein [Clostridium carboxidivorans P7] gi|296185037|ref|ZP_06853447.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7] gi|255508615|gb|EET84998.1| dihydroorotate dehydrogenase family protein [Clostridium carboxidivorans P7] gi|296049871|gb|EFG89295.1| 4Fe-4S binding domain protein [Clostridium carboxidivorans P7] Length = 360 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 24/65 (36%), Gaps = 12/65 (18%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 +E+C +C C C AITI I+ KC CGLC C Sbjct: 306 IFPKINKEKCNSCGKCVKSCAYSAITISDKAN------------INTTKCFGCGLCLTRC 353 Query: 114 PVDAI 118 P AI Sbjct: 354 PETAI 358 >gi|322418741|ref|YP_004197964.1| electron transfer flavoprotein alpha/beta-subunit [Geobacter sp. M18] gi|320125128|gb|ADW12688.1| Electron transfer flavoprotein alpha/beta-subunit [Geobacter sp. M18] Length = 448 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 29/113 (25%), Positives = 40/113 (35%), Gaps = 30/113 (26%) Query: 48 RGEHALRRYPNGEERCIACK-LCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 RG+ L E +CIAC C++ CP I + I + KCI C Sbjct: 11 RGKVRLI-----EGKCIACGARCQSSCPVDGILMSDAGEPE----------IVLSKCIGC 55 Query: 107 GLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTD 159 C +ACP A+ E++Y KE L + V D Sbjct: 56 LKCVKACPGSAL--------------EIFYSKEELEILAQLAGQQDVAEEDAD 94 >gi|167720689|ref|ZP_02403925.1| formate dehydrogenase, alpha subunit [Burkholderia pseudomallei DM98] Length = 978 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 25/85 (29%), Gaps = 10/85 (11%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T + + +C+ CG C Sbjct: 181 YFSYDPSKCIVCNRCVRACEETQGTFALTIASRGFESRVAASAGEAFMDSECVSCGACVA 240 Query: 112 ACPVDAIVE-------GPNFEFATE 129 ACP ++E P E T Sbjct: 241 ACPTATLIEKSVARLGQPEHEIVTT 265 >gi|126699996|ref|YP_001088893.1| indolepyruvate oxidoreductase subunit [Clostridium difficile 630] gi|255101532|ref|ZP_05330509.1| indolepyruvate oxidoreductase subunit [Clostridium difficile QCD-63q42] gi|115251433|emb|CAJ69266.1| Indole pyruvate ferredoxin/flavodoxin oxidoreductase [Clostridium difficile] Length = 595 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 10/60 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++CI CKLC +++G + +ID +C+ CG+C + CP AI Sbjct: 541 DHDKCIGCKLC----------LKTGCPALSFDKENKLSNIDRNQCVGCGVCAQVCPKQAI 590 >gi|126178283|ref|YP_001046248.1| glutamate synthase (NADPH) [Methanoculleus marisnigri JR1] gi|125861077|gb|ABN56266.1| glutamate synthase (NADPH) GltB2 subunit [Methanoculleus marisnigri JR1] Length = 505 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 23/79 (29%), Gaps = 11/79 (13%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 S F R E+C+ C C C + R I+ Sbjct: 1 MSSNFGSMPLRYRISIDREQCMECGRCVENCSYGVFRWDGN-----------RILINSRN 49 Query: 103 CIYCGLCQEACPVDAIVEG 121 C C C CP DAI+ Sbjct: 50 CTACHRCLTYCPRDAIMLQ 68 >gi|21227071|ref|NP_632993.1| coenzyme F420 hydrogenase subunit beta [Methanosarcina mazei Go1] gi|20905396|gb|AAM30665.1| Coenzyme F420 hydrogenase beta subunit [Methanosarcina mazei Go1] Length = 344 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 5/76 (6%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 EK S + L+ C C C A+CPA A+ E+G ++ Y Sbjct: 3 EKKPISKSYLD---LKSKVWDTGLCSGCGACIAVCPADALYFETG--GDSTHPKSNNYCK 57 Query: 99 DMIKCIYCGLCQEACP 114 + + CG C E CP Sbjct: 58 AAVDDVPCGACYEVCP 73 >gi|115526636|ref|YP_783547.1| formate dehydrogenase, alpha subunit [Rhodopseudomonas palustris BisA53] gi|115520583|gb|ABJ08567.1| formate dehydrogenase, alpha subunit [Rhodopseudomonas palustris BisA53] Length = 948 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 26/77 (33%), Gaps = 3/77 (3%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T +G ++ +C+ CG C + Sbjct: 159 YFTYDPSKCIVCSRCVRACEDVQGTFALTIAGRGFDSVVSAGMQESFLGSECVSCGACVQ 218 Query: 112 ACPVDAIVEGPNFEFAT 128 ACP + E E T Sbjct: 219 ACPTATLNEKSIIEIGT 235 >gi|254195604|ref|ZP_04902031.1| formate dehydrogenase, alpha subunit [Burkholderia pseudomallei S13] gi|169652350|gb|EDS85043.1| formate dehydrogenase, alpha subunit [Burkholderia pseudomallei S13] Length = 984 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 25/85 (29%), Gaps = 10/85 (11%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T + + +C+ CG C Sbjct: 187 YFSYDPSKCIVCNRCVRACEETQGTFALTIASRGFESRVAASAGEAFMDSECVSCGACVA 246 Query: 112 ACPVDAIVE-------GPNFEFATE 129 ACP ++E P E T Sbjct: 247 ACPTATLIEKSVARLGQPEHEIVTT 271 >gi|53720140|ref|YP_109126.1| NAD-dependent formate dehydrogenase subunit alpha [Burkholderia pseudomallei K96243] gi|76810667|ref|YP_334390.1| NAD-dependent formate dehydrogenase subunit alpha [Burkholderia pseudomallei 1710b] gi|167739673|ref|ZP_02412447.1| NAD-dependent formate dehydrogenase alpha subunit [Burkholderia pseudomallei 14] gi|167816881|ref|ZP_02448561.1| NAD-dependent formate dehydrogenase alpha subunit [Burkholderia pseudomallei 91] gi|167912020|ref|ZP_02499111.1| NAD-dependent formate dehydrogenase alpha subunit [Burkholderia pseudomallei 112] gi|254192308|ref|ZP_04898797.1| formate dehydrogenase, alpha subunit [Burkholderia pseudomallei Pasteur 52237] gi|254258592|ref|ZP_04949646.1| formate dehydrogenase, NAD-dependent, alpha subunit [Burkholderia pseudomallei 1710a] gi|254295605|ref|ZP_04963063.1| formate dehydrogenase, alpha subunit [Burkholderia pseudomallei 406e] gi|52210554|emb|CAH36537.1| NAD-dependent formate dehydrogenase alpha subunit [Burkholderia pseudomallei K96243] gi|76580120|gb|ABA49595.1| NAD-dependent formate dehydrogenase alpha subunit [Burkholderia pseudomallei 1710b] gi|157805558|gb|EDO82728.1| formate dehydrogenase, alpha subunit [Burkholderia pseudomallei 406e] gi|157987503|gb|EDO95279.1| formate dehydrogenase, alpha subunit [Burkholderia pseudomallei Pasteur 52237] gi|254217281|gb|EET06665.1| formate dehydrogenase, NAD-dependent, alpha subunit [Burkholderia pseudomallei 1710a] Length = 984 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 25/85 (29%), Gaps = 10/85 (11%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T + + +C+ CG C Sbjct: 187 YFSYDPSKCIVCNRCVRACEETQGTFALTIASRGFESRVAASAGEAFMDSECVSCGACVA 246 Query: 112 ACPVDAIVE-------GPNFEFATE 129 ACP ++E P E T Sbjct: 247 ACPTATLIEKSVARLGQPEHEIVTT 271 >gi|124267483|ref|YP_001021487.1| putative electron transport-like protein [Methylibium petroleiphilum PM1] gi|124260258|gb|ABM95252.1| putative electron transport-related protein [Methylibium petroleiphilum PM1] Length = 228 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 22/64 (34%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C LC CP I + + + +C C LC CPVD I Sbjct: 94 DETWCIGCTLCIKACPVDCIVGAAKQ----------MHTVVESQCTGCELCIPVCPVDCI 143 Query: 119 VEGP 122 Sbjct: 144 SLED 147 Score = 33.9 bits (76), Expect = 6.8, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C LC +ACPVD I Sbjct: 93 IDETWCIGCTLCIKACPVDCI 113 >gi|330446093|ref|ZP_08309745.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328490284|dbj|GAA04242.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 1195 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 22/83 (26%), Gaps = 16/83 (19%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQ--------------AITIESGPRCHDGTRRTVR 95 A+ E CI C C ICP A Sbjct: 681 RQAVNVPSWDPELCIQCGNCSFICPHATIRSKIYNKDELAAAPENFKYTDVSARGFPDTA 740 Query: 96 YDI--DMIKCIYCGLCQEACPVD 116 Y I C+ C LC +ACP Sbjct: 741 YTIQVYAEDCMGCTLCVDACPAH 763 Score = 35.1 bits (79), Expect = 3.3, Method: Composition-based stats. Identities = 11/50 (22%), Positives = 16/50 (32%), Gaps = 13/50 (26%) Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWE 149 CI CG C CP I Y+K+ L + ++ Sbjct: 691 PELCIQCGNCSFICPHATIRSK-------------IYNKDELAAAPENFK 727 >gi|312794532|ref|YP_004027455.1| glutamate synthase (NADPH) [Caldicellulosiruptor kristjanssonii 177R1B] gi|312181672|gb|ADQ41842.1| Glutamate synthase (NADPH) [Caldicellulosiruptor kristjanssonii 177R1B] Length = 502 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 9/64 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E +CI CK+C C + + R D KC+ C C CP A+ Sbjct: 14 DETKCIRCKVCVRQCANEVHEYDEEED---------RVVADSSKCVACHRCVVMCPTKAL 64 Query: 119 VEGP 122 Sbjct: 65 TIKK 68 >gi|312621296|ref|YP_004022909.1| glutamate synthase (NADPH) [Caldicellulosiruptor kronotskyensis 2002] gi|312201763|gb|ADQ45090.1| Glutamate synthase (NADPH) [Caldicellulosiruptor kronotskyensis 2002] Length = 502 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 9/64 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E +CI CK+C C + + R D KC+ C C CP A+ Sbjct: 14 DETKCIRCKVCVRQCANEVHEYDEEED---------RVVADSSKCVACHRCVVMCPTKAL 64 Query: 119 VEGP 122 Sbjct: 65 TIKK 68 >gi|317052305|ref|YP_004113421.1| 4Fe-4S ferredoxin, iron-sulfur-binding protein [Desulfurispirillum indicum S5] gi|316947389|gb|ADU66865.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Desulfurispirillum indicum S5] Length = 416 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 24/93 (25%), Positives = 33/93 (35%), Gaps = 16/93 (17%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI 80 F+ L + T P+ + T+ L+ +P RCI C C CP Sbjct: 170 FISLSLLRRTFCTQICPYGRFQTTLLTPATLTLQYHPAHAHRCIRCNACVRACPTGIDIR 229 Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 E Y I +CI CG C +AC Sbjct: 230 EG-------------YQI---ECINCGNCLDAC 246 Score = 33.9 bits (76), Expect = 7.4, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 13/45 (28%), Gaps = 1/45 (2%) Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDI-DMIKCIYCGLCQEACPV 115 C T++Y +CI C C ACP Sbjct: 180 FCTQICPYGRFQTTLLTPATLTLQYHPAHAHRCIRCNACVRACPT 224 >gi|282165442|ref|YP_003357827.1| tungsten-containing formylmethanofuran dehydrogenase subunit G [Methanocella paludicola SANAE] gi|282157756|dbj|BAI62844.1| tungsten-containing formylmethanofuran dehydrogenase subunit G [Methanocella paludicola SANAE] Length = 80 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 19/67 (28%), Gaps = 4/67 (5%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRT----VRYDIDMIKCIYCGLCQEACPVD 116 C C C CP A+ + ID C CG+C CP Sbjct: 14 RICTGCNNCVVACPVNALELTVVNPVTRKKTYNVLNGKAVVIDEDVCNGCGICLMVCPQR 73 Query: 117 AIVEGPN 123 AI Sbjct: 74 AITLTTE 80 >gi|260893193|ref|YP_003239290.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ammonifex degensii KC4] gi|260865334|gb|ACX52440.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ammonifex degensii KC4] Length = 652 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 26/96 (27%), Gaps = 12/96 (12%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAI-------TIESGPRCHDGTRRTVRYDI 98 +R + +C C C CP + + + I Sbjct: 227 NYRVIIRQKARYVDHTKCTGCGTCWEKCPVKVPDELNFRLSTRPAIYLPFPQAVPNKPVI 286 Query: 99 DMIKCI-----YCGLCQEACPVDAIVEGPNFEFATE 129 D C CG+CQ+ CP AI E Sbjct: 287 DARHCRQLTKGKCGVCQKVCPAGAIDYTQQDSLHEE 322 Score = 35.5 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 7/57 (12%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + C C C+ +CP QAI + + R + C CG C AC Sbjct: 579 WVNQALCTGCLHCQVVCPYQAIEVVTEG-------GRRRARVKEELCQGCGSCTVAC 628 >gi|227484615|ref|ZP_03914931.1| NADH dehydrogenase (ubiquinone), RnfC subunit [Anaerococcus lactolyticus ATCC 51172] gi|227237335|gb|EEI87350.1| NADH dehydrogenase (ubiquinone), RnfC subunit [Anaerococcus lactolyticus ATCC 51172] Length = 451 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 1/59 (1%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + CI C C ++CP + DG R + + CI CG C CP Sbjct: 373 FIEDPTPCIRCGRCVSVCPVFLLPNYIHKHALDG-RFEKADEEGALDCIECGSCSFVCP 430 Score = 35.5 bits (80), Expect = 2.9, Method: Composition-based stats. Identities = 9/21 (42%), Positives = 10/21 (47%) Query: 96 YDIDMIKCIYCGLCQEACPVD 116 + D CI CG C CPV Sbjct: 373 FIEDPTPCIRCGRCVSVCPVF 393 >gi|225572231|ref|ZP_03781095.1| hypothetical protein RUMHYD_00525 [Blautia hydrogenotrophica DSM 10507] gi|225040293|gb|EEG50539.1| hypothetical protein RUMHYD_00525 [Blautia hydrogenotrophica DSM 10507] Length = 263 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 23/62 (37%), Positives = 29/62 (46%), Gaps = 11/62 (17%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 N E CI CK CE CP++AI +++ ID KC CG C+E CP Sbjct: 213 NCEVGCIGCKKCEKTCPSEAIKVDN-----------FCAHIDYEKCTNCGACKEVCPRHI 261 Query: 118 IV 119 I Sbjct: 262 IF 263 Score = 33.9 bits (76), Expect = 6.6, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 5/65 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGT-----RRTVRYDIDMIKCIYCGLCQEAC 113 +E C AC C A CP I + P+ + + CI C C++ C Sbjct: 169 DKEACKACGKCVAKCPKHLIELVPYPQEVFVHCSSNAKGKAVTANCEVGCIGCKKCEKTC 228 Query: 114 PVDAI 118 P +AI Sbjct: 229 PSEAI 233 >gi|224023565|ref|ZP_03641931.1| hypothetical protein BACCOPRO_00268 [Bacteroides coprophilus DSM 18228] gi|224016787|gb|EEF74799.1| hypothetical protein BACCOPRO_00268 [Bacteroides coprophilus DSM 18228] Length = 261 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 9/66 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C AC C +CP AI + + + + +CI C C + CP A Sbjct: 187 CNDLCYACGNCIEVCPTHAIYLSADG---------SQIETIAERCIRCCACVKECPTGAR 237 Query: 119 VEGPNF 124 + F Sbjct: 238 IFDSPF 243 >gi|222530321|ref|YP_002574203.1| glutamate synthase [Caldicellulosiruptor bescii DSM 6725] gi|312126412|ref|YP_003991286.1| glutamate synthase (NADPH) [Caldicellulosiruptor hydrothermalis 108] gi|312876679|ref|ZP_07736659.1| Glutamate synthase (NADPH) [Caldicellulosiruptor lactoaceticus 6A] gi|222457168|gb|ACM61430.1| Glutamate synthase (NADPH) [Caldicellulosiruptor bescii DSM 6725] gi|311776431|gb|ADQ05917.1| Glutamate synthase (NADPH) [Caldicellulosiruptor hydrothermalis 108] gi|311796519|gb|EFR12868.1| Glutamate synthase (NADPH) [Caldicellulosiruptor lactoaceticus 6A] Length = 502 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 9/64 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E +CI CK+C C + + R D KC+ C C CP A+ Sbjct: 14 DETKCIRCKVCVRQCANEVHEYDEEED---------RVVADSSKCVACHRCVVMCPTKAL 64 Query: 119 VEGP 122 Sbjct: 65 TIKK 68 >gi|170758534|ref|YP_001786732.1| iron-sulfur cluster-binding protein [Clostridium botulinum A3 str. Loch Maree] gi|169405523|gb|ACA53934.1| iron-sulfur cluster-binding protein [Clostridium botulinum A3 str. Loch Maree] Length = 425 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 27/69 (39%), Gaps = 3/69 (4%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 ++RC+ C C +CP +A + ++ C+ CG+C + C + Sbjct: 288 NINKDRCVGCGKCTKVCPMEA---IKLKETSLEKHSSKIAELSEDLCLGCGVCVKNCKTN 344 Query: 117 AIVEGPNFE 125 AI E Sbjct: 345 AIKLVRRKE 353 Score = 40.9 bits (94), Expect = 0.064, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 6/64 (9%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 PN C C CEA A+ + +I+ +C+ CG C + CP++ Sbjct: 254 PNFICNCCKC-HCEAFVSAK-----KFGFLVPVNTTSYLPNINKDRCVGCGKCTKVCPME 307 Query: 117 AIVE 120 AI Sbjct: 308 AIKL 311 >gi|134046216|ref|YP_001097701.1| cobyrinic acid a,c-diamide synthase [Methanococcus maripaludis C5] gi|132663841|gb|ABO35487.1| Cobyrinic acid a,c-diamide synthase [Methanococcus maripaludis C5] Length = 282 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 15/65 (23%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+CI C+ C C AIT E ++ +KC CGLC+ CP DA+ Sbjct: 64 DPEKCIKCEKCLQ-CRFGAITPELE--------------VNPLKCEGCGLCKYVCPADAV 108 Query: 119 VEGPN 123 N Sbjct: 109 KMVDN 113 >gi|88603409|ref|YP_503587.1| cobyrinic acid a,c-diamide synthase [Methanospirillum hungatei JF-1] gi|88188871|gb|ABD41868.1| Cobyrinic acid a,c-diamide synthase [Methanospirillum hungatei JF-1] Length = 283 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 19/80 (23%), Positives = 27/80 (33%), Gaps = 12/80 (15%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 P H + N +C+ C C C A+T+ R C Sbjct: 51 PEIHPVHVIIPKVNE-SQCMHCGACGEFCRFGALTVLKD-----------RVLFFPQLCH 98 Query: 105 YCGLCQEACPVDAIVEGPNF 124 CG C CP +A+ E P + Sbjct: 99 SCGGCFRVCPHEALEENPAY 118 >gi|170076828|ref|YP_001733466.1| bidirectional hydrogenase complex protein HoxU [Synechococcus sp. PCC 7002] gi|22652022|gb|AAN03566.1|AF381045_3 hydrogenase small diaphorase subunit U [Synechococcus sp. PCC 7002] gi|169884497|gb|ACA98210.1| hydrogenase small diaphorase subunit U [Synechococcus sp. PCC 7002] Length = 238 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 4/70 (5%) Query: 54 RRYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLC 109 +++ RCI C C +C A + R + + + C CG C Sbjct: 139 KQFGIDHNRCILCTRCVRVCDEIEGAHVWDVSNRGGESKIVSGLNQPWGAVDACTSCGKC 198 Query: 110 QEACPVDAIV 119 +ACP +I Sbjct: 199 VDACPTGSIF 208 >gi|254195369|ref|ZP_04901797.1| iron-sulfur cluster-binding protein [Burkholderia pseudomallei S13] gi|169652116|gb|EDS84809.1| iron-sulfur cluster-binding protein [Burkholderia pseudomallei S13] Length = 477 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 27/105 (25%), Gaps = 10/105 (9%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-QAIT 79 + + ++ P E L RCI C C CP A+ Sbjct: 271 YTTFSTGPRRGDDLDGPQEYHVVLVDNGRTRMLAGEFRDMLRCIRCGACMNHCPVYGAVG 330 Query: 80 IESGPRCHDG---------TRRTVRYDIDMIKCIYCGLCQEACPV 115 + + G + C G C E CPV Sbjct: 331 GHAYGWVYPGPMGAVLTPLMQGIEHDTDLPNACTLNGRCAEVCPV 375 Score = 35.1 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 14/25 (56%) Query: 100 MIKCIYCGLCQEACPVDAIVEGPNF 124 M++CI CG C CPV V G + Sbjct: 310 MLRCIRCGACMNHCPVYGAVGGHAY 334 >gi|293376715|ref|ZP_06622938.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Turicibacter sanguinis PC909] gi|325845196|ref|ZP_08168504.1| pyruvate synthase [Turicibacter sp. HGF1] gi|292644672|gb|EFF62759.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Turicibacter sanguinis PC909] gi|325488792|gb|EGC91193.1| pyruvate synthase [Turicibacter sp. HGF1] Length = 1186 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 38/122 (31%), Gaps = 28/122 (22%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIE-----SGPRCHDGTRRTV-------- 94 RG E CI C C +CP I + +GTR Sbjct: 677 RGIANFVPKWIE-ENCIQCNQCAFVCPHAVIRPFLVTEAEKEQAPEGTRTLKAIGKGLDG 735 Query: 95 ---RYDIDMIKCIYCGLCQEACPV----DAIVEGP---NFEFATETRQELYYD----KER 140 + + C C +C CP A+V P E R + +++ K+ Sbjct: 736 LEYCIQVSTLDCTGCEVCAHICPGKKGNKALVMVPISEELEAGQAERSDYFFNKVTYKDD 795 Query: 141 LL 142 LL Sbjct: 796 LL 797 >gi|257064349|ref|YP_003144021.1| hydrogenase, Fe-only [Slackia heliotrinireducens DSM 20476] gi|256792002|gb|ACV22672.1| hydrogenase, Fe-only [Slackia heliotrinireducens DSM 20476] Length = 569 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 24/68 (35%), Gaps = 3/68 (4%) Query: 59 GEERCIACKLCEAIC---PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 +CI C C A C ++ SGP H ID C CG C CP Sbjct: 138 DASKCIKCMRCVAECSKVQYCSVWEHSGPGPHMNVFVKDGLAIDAAGCALCGQCITHCPT 197 Query: 116 DAIVEGPN 123 A+ + Sbjct: 198 GALTARDD 205 >gi|237733893|ref|ZP_04564374.1| 4Fe-4S ferredoxin [Mollicutes bacterium D7] gi|229382974|gb|EEO33065.1| 4Fe-4S ferredoxin [Coprobacillus sp. D7] Length = 251 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 32/100 (32%), Gaps = 12/100 (12%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 +YF + K T F G + F + + E+ CI C C CP + I++ Sbjct: 145 AGKYFLETKPTFIGRFNSGIVNRLFYPMFVRAKGFHVEDTCIGCGQCIHACPLKNISLVD 204 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 I C C C CP AI Sbjct: 205 SRP------------IWDKHCTQCMACISICPKAAIEYKN 232 >gi|283796651|ref|ZP_06345804.1| conserved domain protein [Clostridium sp. M62/1] gi|291076074|gb|EFE13438.1| conserved domain protein [Clostridium sp. M62/1] gi|295092473|emb|CBK78580.1| Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Clostridium cf. saccharolyticum K10] gi|295115344|emb|CBL36191.1| Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [butyrate-producing bacterium SM4/1] Length = 56 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 11/60 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C++C C CP AI+ G Y+ID CI CG C CP AI E Sbjct: 7 DTCVSCGACAGGCPVGAISEGDGK-----------YEIDAAACIDCGACAGTCPTGAIEE 55 >gi|255281565|ref|ZP_05346120.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bryantella formatexigens DSM 14469] gi|255268053|gb|EET61258.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Bryantella formatexigens DSM 14469] Length = 1179 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 25/81 (30%), Gaps = 15/81 (18%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQ-----AITIESGPRCHDGTR---------RT 93 RG N + CI C C +CP A+T E +G + Sbjct: 679 RGIAVDIPVWN-PDNCIQCNRCSYVCPHAVIRPIALTEEEAAAAPEGMKTLPMTGMAGYK 737 Query: 94 VRYDIDMIKCIYCGLCQEACP 114 + C CG C CP Sbjct: 738 FAMVVSAYDCTGCGSCANVCP 758 >gi|240146037|ref|ZP_04744638.1| RnfB/polyferredoxin [Roseburia intestinalis L1-82] gi|257201853|gb|EEV00138.1| RnfB/polyferredoxin [Roseburia intestinalis L1-82] gi|291536104|emb|CBL09216.1| electron transport complex, RnfABCDGE type, B subunit [Roseburia intestinalis M50/1] gi|291539036|emb|CBL12147.1| electron transport complex, RnfABCDGE type, B subunit [Roseburia intestinalis XB6B4] Length = 263 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 27/83 (32%), Gaps = 11/83 (13%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P+ + CI C LCE CP A+ + Sbjct: 191 VPYSAKHIVQCSSKDVGKNVMKACSVGCIGCHLCEKNCPKDAVHVIDN-----------V 239 Query: 96 YDIDMIKCIYCGLCQEACPVDAI 118 ID KC+ CG+C + CP I Sbjct: 240 AYIDQEKCVGCGICAQKCPKKII 262 Score = 35.1 bits (79), Expect = 3.0, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 27/70 (38%), Gaps = 5/70 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV-----RYDIDMIKCIYCGLCQEAC 113 +E C AC C A CP I + H + + CI C LC++ C Sbjct: 169 DKEVCKACGKCVAACPKHLIELVPYSAKHIVQCSSKDVGKNVMKACSVGCIGCHLCEKNC 228 Query: 114 PVDAIVEGPN 123 P DA+ N Sbjct: 229 PKDAVHVIDN 238 Score = 34.7 bits (78), Expect = 4.1, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 20/64 (31%), Gaps = 11/64 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C CP AI I G +D C CG C ACP I Sbjct: 140 CNYGCLGFGSCVKACPFDAIHIVDGIAL-----------VDKEVCKACGKCVAACPKHLI 188 Query: 119 VEGP 122 P Sbjct: 189 ELVP 192 >gi|209170690|gb|ACI42788.1| [FeFe]-hydrogenase [Clostridium tyrobutyricum] Length = 577 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 3/70 (4%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTR-RTVRYDIDMIK--CIYCGLCQEACPV 115 +C+ C C C + T DG R + D+ K C+ CG C ACPV Sbjct: 141 DRTKCVLCGRCVVACKTHSGTSVMKFIKKDGKRAVGIENDLCFDKSNCLLCGQCVIACPV 200 Query: 116 DAIVEGPNFE 125 A+ E P+ + Sbjct: 201 AALTEKPHID 210 >gi|189424812|ref|YP_001951989.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter lovleyi SZ] gi|189421071|gb|ACD95469.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter lovleyi SZ] Length = 55 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 11/65 (16%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C C CE CP AI+ + R ID CI CG C + CP Sbjct: 1 MAHTITDDCTNCAACEDSCPVNAISEQGSKRV-----------IDADTCIDCGACVDTCP 49 Query: 115 VDAIV 119 V+AI Sbjct: 50 VNAIH 54 >gi|166032145|ref|ZP_02234974.1| hypothetical protein DORFOR_01848 [Dorea formicigenerans ATCC 27755] gi|166027868|gb|EDR46625.1| hypothetical protein DORFOR_01848 [Dorea formicigenerans ATCC 27755] Length = 249 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 11/81 (13%) Query: 42 STSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 +P F E + + CI C LCE CPA+AI I+ G Sbjct: 162 EMAPVFNREWRKTAAYHVSDECIGCGLCERKCPAKAIEIQDGKPVWIK-----------E 210 Query: 102 KCIYCGLCQEACPVDAIVEGP 122 C C C CPV+AI G Sbjct: 211 DCYLCMACLNYCPVEAIDYGK 231 Score = 37.4 bits (85), Expect = 0.71, Method: Composition-based stats. Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 1/54 (1%) Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + A+ T E P + R+T Y + +CI CGLC+ CP AI Sbjct: 150 VKMGEDAKTRTYEMAPVFNREWRKTAAYHVS-DECIGCGLCERKCPAKAIEIQD 202 >gi|270307598|ref|YP_003329656.1| [Fe] hydrogenase, Hym C subunit [Dehalococcoides sp. VS] gi|270153490|gb|ACZ61328.1| [Fe] hydrogenase, Hym C subunit [Dehalococcoides sp. VS] Length = 573 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 23/65 (35%), Gaps = 3/65 (4%) Query: 59 GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115 +CIAC C +C Q + T D M C CG C CPV Sbjct: 143 DPNKCIACGRCVRVCHDIQTVNAIGFINKGPDTMVATSMDRGMGNVACANCGQCILVCPV 202 Query: 116 DAIVE 120 AI E Sbjct: 203 GAIKE 207 >gi|147668790|ref|YP_001213608.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit [Dehalococcoides sp. BAV1] gi|146269738|gb|ABQ16730.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein [Dehalococcoides sp. BAV1] Length = 428 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 5/61 (8%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 ++ C C +C+AICPA AI ++ P + ++ C CG C + CP I Sbjct: 16 QQLCCGCGICQAICPAGAIKMQIAPD-----KGIYLPWLNTSLCRSCGKCLKVCPGTGID 70 Query: 120 E 120 Sbjct: 71 L 71 >gi|148977529|ref|ZP_01814108.1| NADPH-dependent glutamate synthase beta chain [Vibrionales bacterium SWAT-3] gi|145963180|gb|EDK28447.1| NADPH-dependent glutamate synthase beta chain [Vibrionales bacterium SWAT-3] Length = 1361 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 23/71 (32%), Gaps = 11/71 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM-----------IKCIYCG 107 RCI+C C C Q + + R + C+ CG Sbjct: 589 DANRCISCGQCIQACREQNVHGVLSFMNQADGKPASRPECRPNFGANQTLMGDSNCVQCG 648 Query: 108 LCQEACPVDAI 118 C +ACP A+ Sbjct: 649 SCIQACPTGAM 659 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 4/69 (5%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 K ++ P R + G+ C+ C C CP A+ + D I Sbjct: 621 KPASRPECRPNFGANQTLMGDSNCVQCGSCIQACPTGAMVDARDRKQGDTDVLKKVDTI- 679 Query: 100 MIKCIYCGL 108 C YCG+ Sbjct: 680 ---CTYCGV 685 >gi|134046563|ref|YP_001098048.1| formate dehydrogenase subunit beta (F420) [Methanococcus maripaludis C5] gi|132664188|gb|ABO35834.1| formate dehydrogenase, beta subunit (F420) [Methanococcus maripaludis C5] Length = 375 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 7/96 (7%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIAC------KLCEAICPAQAITIESGPRCHDGTR 91 F+K ++ Y + +C C C+ A+ + Sbjct: 258 FQKEHLDEKYPSPEKWNEYWSRCIKCYGCRDVCPICFCKECALAEDYLDKGTIPPDPIMF 317 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFA 127 + +R CI CG C++ CPV+ I + A Sbjct: 318 QGIRLSHMSFSCINCGQCEDVCPVE-IPLAKIYHRA 352 >gi|488597|gb|AAA85785.1| hydrogenase-1 [Clostridium saccharobutylicum] Length = 574 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 27/113 (23%), Positives = 40/113 (35%), Gaps = 5/113 (4%) Query: 24 LRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESG 83 L+ K K N PF S + + +C+ C CEA C + T Sbjct: 110 LKLVIKTKAKANKPFVVEDKSQYI--DIRSKSIVIDRTKCVLCGRCEAACKTKTGTGAIS 167 Query: 84 PRCHDGTRRTVRY---DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQE 133 + R D C+ CG C ACPV A+ E + + E ++ Sbjct: 168 ICKSESGRIVQATGGKCFDDTNCLLCGQCVAACPVGALTEKTHVDRVKEALED 220 >gi|57235003|ref|YP_180897.1| [Fe] hydrogenase, large subunit HymC, putative [Dehalococcoides ethenogenes 195] gi|57225451|gb|AAW40508.1| [Fe] hydrogenase, large subunit HymC, putative [Dehalococcoides ethenogenes 195] Length = 573 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 23/65 (35%), Gaps = 3/65 (4%) Query: 59 GEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115 +CIAC C +C Q + T D M C CG C CPV Sbjct: 143 DPNKCIACGRCVRVCHDIQTVNAIGFINKGPDTMVATSMDRGMGNVACANCGQCILVCPV 202 Query: 116 DAIVE 120 AI E Sbjct: 203 GAIKE 207 >gi|83590042|ref|YP_430051.1| 4Fe-4S ferredoxin, iron-sulfur binding [Moorella thermoacetica ATCC 39073] gi|83572956|gb|ABC19508.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Moorella thermoacetica ATCC 39073] Length = 1487 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 10/63 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E +C AC C +CP I I+ ++C+ CG C CP AI Sbjct: 1417 DENKCAACLTCVRVCPFNVPRINERNVAE----------INAVQCMGCGTCAGECPAKAI 1466 Query: 119 VEG 121 Sbjct: 1467 QLQ 1469 >gi|14590828|ref|NP_142900.1| hypothetical protein PH0983 [Pyrococcus horikoshii OT3] gi|3257397|dbj|BAA30080.1| 300aa long hypothetical protein [Pyrococcus horikoshii OT3] Length = 300 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 17/69 (24%), Positives = 26/69 (37%), Gaps = 10/69 (14%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R + E CI C LC+ CP + I ++ Y ++ + C C Sbjct: 59 REHIGAKIARINPESCIRCGLCQMRCPYECIYVDEEGN----------YVVNELTCEGCN 108 Query: 108 LCQEACPVD 116 +C CPV Sbjct: 109 VCGLVCPVP 117 Score = 37.4 bits (85), Expect = 0.77, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 14/42 (33%) Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + I+ CI CGLCQ CP + I Sbjct: 53 TEWEIEREHIGAKIARINPESCIRCGLCQMRCPYECIYVDEE 94 >gi|86131474|ref|ZP_01050072.1| iron-sulfur cluster-binding protein [Dokdonia donghaensis MED134] gi|85817919|gb|EAQ39087.1| iron-sulfur cluster-binding protein [Dokdonia donghaensis MED134] Length = 543 Score = 43.2 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 10/67 (14%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R + R NG +CI+C C C + +I C+ CG Sbjct: 449 RFKSRFRITTNG-GQCISCGNCSTYCEQGIDVRAYAQKGE---------NIVRSSCVGCG 498 Query: 108 LCQEACP 114 +C CP Sbjct: 499 ICSAVCP 505 >gi|323704242|ref|ZP_08115821.1| protein of unknown function DUF362 [Thermoanaerobacterium xylanolyticum LX-11] gi|323536308|gb|EGB26080.1| protein of unknown function DUF362 [Thermoanaerobacterium xylanolyticum LX-11] Length = 378 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 35/118 (29%), Gaps = 26/118 (22%) Query: 1 MRIFRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 M I + + F + + R+ H Sbjct: 274 MNIEDIKIDDFDIPTL-RGFSVT--------------EKIPKFLVRYLDRHVKPYPVFDH 318 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C +C +C CP +A+ + +D+ CI C CQE CP A+ Sbjct: 319 DACKSCGICVTNCPPKALKMVESKPI-----------VDLKACIRCFCCQELCPHKAV 365 >gi|299146847|ref|ZP_07039915.1| putative iron-sulfur cluster-binding protein [Bacteroides sp. 3_1_23] gi|298517338|gb|EFI41219.1| putative iron-sulfur cluster-binding protein [Bacteroides sp. 3_1_23] Length = 312 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 34/129 (26%), Gaps = 35/129 (27%) Query: 29 KAKTTINYPFEKGSTSPRFRGEHAL----------RRYPNGEERCIACKLCEAICPAQAI 78 + E+ F L Y + CI C C +CP Sbjct: 187 RRHWHEPVSEEERQMHAGFMARSGLDPEVGFLKRSENYFVVTKNCIDCGACTDVCPRGNY 246 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDK 138 S G C +C C + CP AI N E Sbjct: 247 EFTSNGIKMQG------------DCDFCFACIQNCPQKAIQFKKNDE------------- 281 Query: 139 ERLLNNGDR 147 + LL NG+R Sbjct: 282 DPLLANGER 290 >gi|282163379|ref|YP_003355764.1| glutamate synthase large subunit domain 2 [Methanocella paludicola SANAE] gi|282155693|dbj|BAI60781.1| glutamate synthase large subunit domain 2 [Methanocella paludicola SANAE] Length = 508 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 22/65 (33%), Gaps = 9/65 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + +C+ CK C C A+T D KC+ C C CP AI Sbjct: 19 NDRKCVRCKKCTTECGFGAVTYSKE---------FDCIIADDSKCVACLRCVTMCPKRAI 69 Query: 119 VEGPN 123 N Sbjct: 70 RIEHN 74 >gi|237738128|ref|ZP_04568609.1| pyruvate oxidoreductase [Fusobacterium mortiferum ATCC 9817] gi|229420008|gb|EEO35055.1| pyruvate oxidoreductase [Fusobacterium mortiferum ATCC 9817] Length = 100 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 22/63 (34%), Positives = 27/63 (42%), Gaps = 10/63 (15%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E C C LC CP AI ++ G R DM C CG+C +ACP +AI Sbjct: 48 ENCKQCLLCVPCCPDSAIPVKEGKRLEF----------DMDHCKGCGVCSKACPFNAIEM 97 Query: 121 GPN 123 Sbjct: 98 VKE 100 >gi|206561322|ref|YP_002232087.1| NAD-dependent formate dehydrogenase subunit alpha [Burkholderia cenocepacia J2315] gi|198037364|emb|CAR53297.1| NAD-dependent formate dehydrogenase alpha subunit [Burkholderia cenocepacia J2315] Length = 983 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 20/69 (28%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T + +C+ CG C Sbjct: 187 YFTYDPSKCIVCNRCVRACEETQGTFALTIAARGFESRVAAGESESFMASECVSCGACVA 246 Query: 112 ACPVDAIVE 120 ACP + E Sbjct: 247 ACPTATLQE 255 >gi|134046283|ref|YP_001097768.1| putative ATPase RIL [Methanococcus maripaludis C5] gi|132663908|gb|ABO35554.1| ABC transporter related protein [Methanococcus maripaludis C5] Length = 590 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 1/73 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +RC + C C + + I C CG+C + CP +AI Sbjct: 8 DYDRCQP-RRCSMECMKYCPGVRMEEETIVMDENLGKPIISEELCSGCGICTKRCPFEAI 66 Query: 119 VEGPNFEFATETR 131 E T+ R Sbjct: 67 KIIGLPEELTDDR 79 >gi|126178994|ref|YP_001046959.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit [Methanoculleus marisnigri JR1] gi|125861788|gb|ABN56977.1| formate dehydrogenase, beta subunit (F420) [Methanoculleus marisnigri JR1] Length = 412 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 9/75 (12%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPR---------CHDGTRRTVRYDID 99 G+ L++ RCI C C CP S + +R+ Sbjct: 280 GKERLQKIMEDASRCIKCYACIENCPICYCEECSTKKDYLVPPGVLPVPFMFHLIRFAHV 339 Query: 100 MIKCIYCGLCQEACP 114 C+ CG C+E CP Sbjct: 340 ADSCVNCGQCEENCP 354 >gi|160878703|ref|YP_001557671.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Clostridium phytofermentans ISDg] gi|160427369|gb|ABX40932.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Clostridium phytofermentans ISDg] Length = 697 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 15/52 (28%), Positives = 20/52 (38%), Gaps = 6/52 (11%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 C C C+ +CP AI + KCI+CGLC+ C Sbjct: 317 ECCGCYACKEVCPTGAIQMLMDREGFYYPHVNK------EKCIHCGLCERVC 362 Score = 40.5 bits (93), Expect = 0.079, Method: Composition-based stats. Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 10/46 (21%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY---DKER 140 I +C C C+E CP AI R+ YY +KE+ Sbjct: 313 ITRGECCGCYACKEVCPTGAIQMLM-------DREGFYYPHVNKEK 351 >gi|53724804|ref|YP_102259.1| formate dehydrogenase subunit alpha [Burkholderia mallei ATCC 23344] gi|121599913|ref|YP_993895.1| formate dehydrogenase, alpha subunit [Burkholderia mallei SAVP1] gi|124385511|ref|YP_001026956.1| formate dehydrogenase, alpha subunit [Burkholderia mallei NCTC 10229] gi|126448429|ref|YP_001079756.1| formate dehydrogenase, alpha subunit [Burkholderia mallei NCTC 10247] gi|238561694|ref|ZP_00441684.2| formate dehydrogenase, alpha subunit [Burkholderia mallei GB8 horse 4] gi|251766976|ref|ZP_02265541.2| formate dehydrogenase, alpha subunit [Burkholderia mallei PRL-20] gi|254203944|ref|ZP_04910304.1| formate dehydrogenase, alpha subunit [Burkholderia mallei FMH] gi|254208924|ref|ZP_04915272.1| formate dehydrogenase, alpha subunit [Burkholderia mallei JHU] gi|254360021|ref|ZP_04976291.1| formate dehydrogenase, alpha subunit [Burkholderia mallei 2002721280] gi|52428227|gb|AAU48820.1| formate dehydrogenase, alpha subunit [Burkholderia mallei ATCC 23344] gi|121228723|gb|ABM51241.1| formate dehydrogenase, alpha subunit [Burkholderia mallei SAVP1] gi|124293531|gb|ABN02800.1| putative sulfite reductase [NADPH] flavoprotein, alpha-component [Burkholderia mallei NCTC 10229] gi|126241299|gb|ABO04392.1| putative sulfite reductase [NADPH] flavoprotein, alpha-component [Burkholderia mallei NCTC 10247] gi|147745456|gb|EDK52536.1| formate dehydrogenase, alpha subunit [Burkholderia mallei FMH] gi|147750800|gb|EDK57869.1| formate dehydrogenase, alpha subunit [Burkholderia mallei JHU] gi|148029261|gb|EDK87166.1| formate dehydrogenase, alpha subunit [Burkholderia mallei 2002721280] gi|238524153|gb|EEP87588.1| formate dehydrogenase, alpha subunit [Burkholderia mallei GB8 horse 4] gi|243064205|gb|EES46391.1| formate dehydrogenase, alpha subunit [Burkholderia mallei PRL-20] Length = 984 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 25/85 (29%), Gaps = 10/85 (11%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T + + +C+ CG C Sbjct: 187 YFSYDPSKCIVCNRCVRACEETQGTFALTIASRGFESRVAASAGEAFMDSECVSCGACVA 246 Query: 112 ACPVDAIVE-------GPNFEFATE 129 ACP ++E P E T Sbjct: 247 ACPTATLIEKSVARLGQPEHEIVTT 271 >gi|115522044|ref|YP_778955.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Rhodopseudomonas palustris BisA53] gi|115515991|gb|ABJ03975.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Rhodopseudomonas palustris BisA53] Length = 485 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 30/104 (28%), Gaps = 16/104 (15%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 + Y +++G + LR CI C C A+CP Sbjct: 242 NVTYKYDRGEQRTSLKKAEQLRAQGEKVGDCIDCNQCVAVCPTG---------------- 285 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 D + CI CGLC +AC G + Sbjct: 286 IDIRDGSQLDCIQCGLCIDACDTVMKKIGRETRLIGYDNDINIH 329 >gi|107022109|ref|YP_620436.1| formate dehydrogenase, alpha subunit [Burkholderia cenocepacia AU 1054] gi|116689054|ref|YP_834677.1| formate dehydrogenase, alpha subunit [Burkholderia cenocepacia HI2424] gi|105892298|gb|ABF75463.1| formate dehydrogenase alpha subunit [Burkholderia cenocepacia AU 1054] gi|116647143|gb|ABK07784.1| formate dehydrogenase alpha subunit [Burkholderia cenocepacia HI2424] Length = 983 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 20/69 (28%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T + +C+ CG C Sbjct: 187 YFTYDPSKCIVCNRCVRACEETQGTFALTIAARGFESRVAAGESESFMASECVSCGACVA 246 Query: 112 ACPVDAIVE 120 ACP + E Sbjct: 247 ACPTATLQE 255 >gi|219666778|ref|YP_002457213.1| reductive dehalogenase [Desulfitobacterium hafniense DCB-2] gi|19421902|gb|AAL87790.1|AF403184_15 putative reductive dehalogenase [Desulfitobacterium hafniense DCB-2] gi|219537038|gb|ACL18777.1| reductive dehalogenase [Desulfitobacterium hafniense DCB-2] Length = 458 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 7/62 (11%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDG-------TRRTVRYDIDMIKCIYCGLCQEA 112 ++ C CK C CP++AIT ++ ++G ++ + + + CG C + Sbjct: 337 QDFCRVCKKCADNCPSEAITHDTDMVEYNGYLRWNSDMKKCAEFRLTNSEGSSCGRCMKV 396 Query: 113 CP 114 CP Sbjct: 397 CP 398 >gi|320162471|ref|YP_004175696.1| ferredoxin [Anaerolinea thermophila UNI-1] gi|319996325|dbj|BAJ65096.1| ferredoxin [Anaerolinea thermophila UNI-1] Length = 57 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 20/58 (34%), Positives = 25/58 (43%), Gaps = 11/58 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI C CE CP AI ++ Y +D KC CG C + CP AI Sbjct: 8 DDCIQCGACETECPEGAIYMDGE-----------YYVVDEAKCKDCGSCVDVCPTGAI 54 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 11/38 (28%), Positives = 16/38 (42%) Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 + + I CI CG C+ CP AI + E + Sbjct: 1 MTHVISKDDCIQCGACETECPEGAIYMDGEYYVVDEAK 38 >gi|310778429|ref|YP_003966762.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Ilyobacter polytropus DSM 2926] gi|309747752|gb|ADO82414.1| NAD(P)-dependent iron-only hydrogenase diaphorase component flavoprotein [Ilyobacter polytropus DSM 2926] Length = 595 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 10/65 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + ++CI C C +CP I + ++ ID CI CG C C Sbjct: 541 YSINDKCIGCTACARVCPVNCIAG----------KVKEKHVIDQSVCIKCGACYSTCKFG 590 Query: 117 AIVEG 121 AI G Sbjct: 591 AIDRG 595 Score = 37.0 bits (84), Expect = 0.94, Method: Composition-based stats. Identities = 12/45 (26%), Positives = 16/45 (35%) Query: 74 PAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + + RC G + KCI C C CPV+ I Sbjct: 518 WDEYVAHVVDKRCPAGACTDLLQYSINDKCIGCTACARVCPVNCI 562 >gi|255975951|ref|ZP_05426537.1| formate dehydrogenase [Enterococcus faecalis T2] gi|255968823|gb|EET99445.1| formate dehydrogenase [Enterococcus faecalis T2] Length = 895 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 3/92 (3%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTV 94 F +G P + + + + E+CI C+ C +C + + + Sbjct: 122 FTEGKRMPCHQEDTSNPFFSYDPEKCIMCRRCARVCQLRQGRDVLSIANRGFETKMMPSY 181 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNFEF 126 D C CG C +CP A+ E+ Sbjct: 182 GQAFDQSICESCGNCVSSCPTGALTAKDTKEY 213 >gi|255011331|ref|ZP_05283457.1| putative dehydrogenase [Bacteroides fragilis 3_1_12] Length = 598 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 26/74 (35%), Gaps = 6/74 (8%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + +C C C C AIT ++ KC+ C LC++ C Sbjct: 1 MINIIDKTKCCGCNACGDACAHGAITFKTDIEGFWYPTVNK------DKCVNCELCEKVC 54 Query: 114 PVDAIVEGPNFEFA 127 P+ I E + + Sbjct: 55 PIINIKELKKNDLS 68 >gi|166368538|ref|YP_001660811.1| bidirectional hydrogenase complex protein HoxU [Microcystis aeruginosa NIES-843] gi|166090911|dbj|BAG05619.1| diaphorase subunit of the bidirectional hydrogenase [Microcystis aeruginosa NIES-843] Length = 238 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 21/68 (30%), Gaps = 4/68 (5%) Query: 56 YPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLCQE 111 + RC+ C C +C A + R + C CG C Sbjct: 141 FGIDHNRCVLCTRCVRVCDEIEGAHVWDLAYRGEKDKIIAGMDQPWGSVSACTSCGKCVA 200 Query: 112 ACPVDAIV 119 ACP AI Sbjct: 201 ACPTGAIF 208 >gi|164687856|ref|ZP_02211884.1| hypothetical protein CLOBAR_01500 [Clostridium bartlettii DSM 16795] gi|164603131|gb|EDQ96596.1| hypothetical protein CLOBAR_01500 [Clostridium bartlettii DSM 16795] Length = 333 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 11/56 (19%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 CI CK CE CP AIT+E+ ID KC+ C +C + CP I Sbjct: 214 CIGCKKCEKSCPVGAITVENNLA-----------TIDYSKCVGCKVCADVCPKKVI 258 Score = 40.5 bits (93), Expect = 0.083, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 8/60 (13%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +C+ CK+C +CP + I + R + ID KCI C C CP AI Sbjct: 239 DYSKCVGCKVCADVCPKKVIKADLSDR--------RKVSIDESKCIGCTACARTCPFGAI 290 Score = 39.3 bits (90), Expect = 0.20, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 5/78 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQEAC 113 E++C+ C C CP I + + + D CI C C+++C Sbjct: 165 DEDKCVLCGKCIDTCPKGLIQKKPAKQEVVVECSSKDKGKDVKDKCSAGCIGCKKCEKSC 224 Query: 114 PVDAIVEGPNFEFATETR 131 PV AI N ++ Sbjct: 225 PVGAITVENNLATIDYSK 242 Score = 37.4 bits (85), Expect = 0.61, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 27/69 (39%), Gaps = 10/69 (14%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 R+ E +CI C C CP AI E + +D+ KC C LC + C Sbjct: 266 RKVSIDESKCIGCTACARTCPFGAIEGEKKQP----------HKVDLEKCKGCHLCMKKC 315 Query: 114 PVDAIVEGP 122 DAI Sbjct: 316 KKDAIKLVD 324 >gi|150003986|ref|YP_001298730.1| pyruvate-formate lyase-activating enzyme [Bacteroides vulgatus ATCC 8482] gi|149932410|gb|ABR39108.1| pyruvate-formate lyase-activating enzyme [Bacteroides vulgatus ATCC 8482] Length = 302 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 15/80 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++C+ C C +CP A+T+ D KC+ CG C E CP AI Sbjct: 51 KKCLGCGTCLKVCPNGALTLTPEGIITDKQ-----------KCVLCGRCAEECPAMAIEI 99 Query: 121 GPNFEFATETRQELYYDKER 140 T + L ++ E+ Sbjct: 100 SG----TEYTAEYLMHEIEK 115 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 15/39 (38%) Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 +G R KC+ CG C + CP A+ P Sbjct: 35 HNPEGIRNGKDKLYTAKKCLGCGTCLKVCPNGALTLTPE 73 >gi|91201028|emb|CAJ74086.1| similar to Na(+)-translocating NADH-quinone reductase subunit A [Candidatus Kuenenia stuttgartiensis] Length = 348 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 3/53 (5%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVR-YDIDMIKCIYCGLCQEACP 114 C+ C C+ ICP + G ++ VR YDI KCI CGLC ACP Sbjct: 278 CVYCNFCDDICPVNLEPALYHQAYNRGEKQKVRSYDI--EKCIECGLCSFACP 328 >gi|2463276|emb|CAA74096.1| F420-reducing hydrogenase isoenzyme I gamma subunit [Methanosarcina barkeri] Length = 259 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 11/62 (17%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L + CI C +C A CP +AIT E G D+ CI CG C A Sbjct: 179 LMDDVINQGLCIGCGICAASCPVRAITHEFGK-----------PQGDLNLCIKCGSCYGA 227 Query: 113 CP 114 CP Sbjct: 228 CP 229 Score = 38.2 bits (87), Expect = 0.36, Method: Composition-based stats. Identities = 12/27 (44%), Positives = 15/27 (55%), Gaps = 2/27 (7%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNF 124 I+ CI CG+C +CPV AI F Sbjct: 184 INQGLCIGCGICAASCPVRAI--THEF 208 >gi|78065616|ref|YP_368385.1| formate dehydrogenase, alpha subunit [Burkholderia sp. 383] gi|77966361|gb|ABB07741.1| formate dehydrogenase alpha subunit [Burkholderia sp. 383] Length = 983 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 20/69 (28%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T + +C+ CG C Sbjct: 187 YFTYDPSKCIVCNRCVRACEETQGTFALTIAARGFESRVAAGESESFMASECVSCGACVA 246 Query: 112 ACPVDAIVE 120 ACP + E Sbjct: 247 ACPTATLQE 255 >gi|299139029|ref|ZP_07032206.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidobacterium sp. MP5ACTX8] gi|298599183|gb|EFI55344.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Acidobacterium sp. MP5ACTX8] Length = 86 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 3/55 (5%) Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 C CP I + G + ID ++CI CG C CPV AI G + Sbjct: 17 CVDACPVDCIHP---KKDETGHGEAEQLFIDPVECIDCGACVPVCPVSAIYAGDD 68 >gi|325680883|ref|ZP_08160420.1| 4Fe-4S binding domain protein [Ruminococcus albus 8] gi|324107347|gb|EGC01626.1| 4Fe-4S binding domain protein [Ruminococcus albus 8] Length = 405 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 6/63 (9%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C C C CP I ++ D KCI CG C + CPV + Sbjct: 9 KDCCGCSACMNSCPKDCIKMKPDKEG------FSYPVTDAAKCIDCGRCTKVCPVLNKNK 62 Query: 121 GPN 123 + Sbjct: 63 TDD 65 >gi|222100045|ref|YP_002534613.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermotoga neapolitana DSM 4359] gi|221572435|gb|ACM23247.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermotoga neapolitana DSM 4359] Length = 521 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 11/65 (16%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C CP +A++ SG + + +CI+CG C E CP A + Sbjct: 10 TDCRYCYKCLRNCPVKAVSFRSGKS-----------TVVVEECIFCGTCLEVCPQSARIY 58 Query: 121 GPNFE 125 + E Sbjct: 59 RKDTE 63 >gi|170759045|ref|YP_001787152.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum A3 str. Loch Maree] gi|169406034|gb|ACA54445.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum A3 str. Loch Maree] Length = 574 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 11/77 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + C C C CP +AI ++ +I +CI CG C Sbjct: 1 MNYIDISGLNCKNCYKCLRACPVKAIKFKNEKA-----------EIVEERCISCGRCLVI 49 Query: 113 CPVDAIVEGPNFEFATE 129 CP +A + P+ ++ + Sbjct: 50 CPQNAKKDKPDIKYVKD 66 Score = 33.5 bits (75), Expect = 9.8, Method: Composition-based stats. Identities = 13/35 (37%), Positives = 14/35 (40%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 DI + C C C ACPV AI E R Sbjct: 5 DISGLNCKNCYKCLRACPVKAIKFKNEKAEIVEER 39 >gi|167630077|ref|YP_001680576.1| heterodisulfide reductase, subunit a [Heliobacterium modesticaldum Ice1] gi|167592817|gb|ABZ84565.1| heterodisulfide reductase, subunit a [Heliobacterium modesticaldum Ice1] Length = 660 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 23/65 (35%), Positives = 28/65 (43%), Gaps = 1/65 (1%) Query: 57 PNGEERCIACKLCEAICPAQAIT-IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 E C C LC +ICP +AI R H GTR ++ C CG C ACP Sbjct: 578 RCDEAYCSGCGLCVSICPYKAIELKRISERVHGGTRERQVSSVNQGLCQGCGACSVACPS 637 Query: 116 DAIVE 120 A+ Sbjct: 638 SAMNL 642 Score = 37.0 bits (84), Expect = 0.99, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 27/85 (31%), Gaps = 12/85 (14%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGP-------RCHDGTRRTVRYDIDMIKCIY---- 105 +C C LC CP + ++ + ID C Y Sbjct: 237 YVDVNKCTGCGLCSEKCPKKVVSEFEMKLGTRKAIYVPFPQAVPNKPVIDAKNCRYLSEG 296 Query: 106 -CGLCQEACPVDAIVEGPNFEFATE 129 CG+C++ CP A+ E E Sbjct: 297 KCGVCKKVCPTGAVDFEQKDELIVE 321 Score = 35.1 bits (79), Expect = 3.7, Method: Composition-based stats. Identities = 13/37 (35%), Positives = 14/37 (37%), Gaps = 1/37 (2%) Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFE-FATETRQ 132 D C CGLC CP AI E TR+ Sbjct: 578 RCDEAYCSGCGLCVSICPYKAIELKRISERVHGGTRE 614 >gi|167564980|ref|ZP_02357896.1| iron-sulfur cluster binding protein [Burkholderia oklahomensis EO147] Length = 481 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 26/105 (24%), Gaps = 10/105 (9%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-QAIT 79 + K ++ P E L RCI C C CP A+ Sbjct: 275 YTTFSTGPKRGDDLDGPREYHVVLVDNGRTRMLAGEFRDMLRCIRCGACMNHCPVYGAVG 334 Query: 80 IESGPRCHDGTR---------RTVRYDIDMIKCIYCGLCQEACPV 115 + + G C G C E CPV Sbjct: 335 GHAYGWVYPGPMGAVLTPLLQGIEHDTDLPNACTLNGRCAEVCPV 379 Score = 35.1 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 14/25 (56%) Query: 100 MIKCIYCGLCQEACPVDAIVEGPNF 124 M++CI CG C CPV V G + Sbjct: 314 MLRCIRCGACMNHCPVYGAVGGHAY 338 >gi|148379736|ref|YP_001254277.1| sulfite/nitrite reductase family protein [Clostridium botulinum A str. ATCC 3502] gi|153934060|ref|YP_001384033.1| sulfite/nitrite reductase family protein [Clostridium botulinum A str. ATCC 19397] gi|153936092|ref|YP_001387575.1| sulfite/nitrite reductase family protein [Clostridium botulinum A str. Hall] gi|148289220|emb|CAL83315.1| anaerobic sulfite reductase subunit C [Clostridium botulinum A str. ATCC 3502] gi|152930104|gb|ABS35604.1| sulfite/nitrite reductase family protein [Clostridium botulinum A str. ATCC 19397] gi|152932006|gb|ABS37505.1| sulfite/nitrite reductase family protein [Clostridium botulinum A str. Hall] Length = 284 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 23/109 (21%), Positives = 34/109 (31%), Gaps = 20/109 (18%) Query: 12 FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71 F E F + L + P S G EE+C C +C Sbjct: 126 FGYELPSKFKITL---------VGCPNNCAKASINDIGIMGQAYVEFDEEKCKVCGICTK 176 Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C +A+T+E+ C+ CG C CP +A+ Sbjct: 177 SCRQKAVTVENKKIV-----------YKKDLCVNCGKCATVCPFEAMTI 214 >gi|254975966|ref|ZP_05272438.1| indolepyruvate oxidoreductase subunit [Clostridium difficile QCD-66c26] gi|255093353|ref|ZP_05322831.1| indolepyruvate oxidoreductase subunit [Clostridium difficile CIP 107932] gi|255315099|ref|ZP_05356682.1| indolepyruvate oxidoreductase subunit [Clostridium difficile QCD-76w55] gi|255517769|ref|ZP_05385445.1| indolepyruvate oxidoreductase subunit [Clostridium difficile QCD-97b34] gi|255650882|ref|ZP_05397784.1| indolepyruvate oxidoreductase subunit [Clostridium difficile QCD-37x79] gi|306520773|ref|ZP_07407120.1| indolepyruvate oxidoreductase subunit [Clostridium difficile QCD-32g58] Length = 595 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 10/60 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++CI CKLC +++G + +ID +C+ CG+C + CP AI Sbjct: 541 DHDKCIGCKLC----------LKTGCPALSFDKENKLSNIDRNQCVGCGVCAQVCPKQAI 590 >gi|33595781|ref|NP_883424.1| NAD-dependent formate dehydrogenase alpha subunit [Bordetella parapertussis 12822] gi|33565860|emb|CAE36406.1| NAD-dependent formate dehydrogenase alpha subunit [Bordetella parapertussis] Length = 958 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 22/69 (31%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T SG +C+ CG C + Sbjct: 162 YFTYDPSKCIVCNRCVRACEETQGTFALTISGKGFASRVSPGQDQPFMDSECVSCGACVQ 221 Query: 112 ACPVDAIVE 120 ACP + E Sbjct: 222 ACPTSTLQE 230 >gi|170732342|ref|YP_001764289.1| formate dehydrogenase subunit alpha [Burkholderia cenocepacia MC0-3] gi|254246012|ref|ZP_04939333.1| Formate dehydrogenase, alpha subunit [Burkholderia cenocepacia PC184] gi|124870788|gb|EAY62504.1| Formate dehydrogenase, alpha subunit [Burkholderia cenocepacia PC184] gi|169815584|gb|ACA90167.1| formate dehydrogenase, alpha subunit [Burkholderia cenocepacia MC0-3] Length = 983 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 20/69 (28%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T + +C+ CG C Sbjct: 187 YFTYDPSKCIVCNRCVRACEETQGTFALTIAARGFESRVAAGESESFMASECVSCGACVA 246 Query: 112 ACPVDAIVE 120 ACP + E Sbjct: 247 ACPTATLQE 255 >gi|150391790|ref|YP_001321839.1| molybdopterin oxidoreductase Fe4S4 region [Alkaliphilus metalliredigens QYMF] gi|149951652|gb|ABR50180.1| molybdopterin oxidoreductase Fe4S4 region [Alkaliphilus metalliredigens QYMF] Length = 348 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 3/68 (4%) Query: 55 RYPNGEERCIACKLCEAICPA-QAITIESGPRCHDGTRRTVRYD--IDMIKCIYCGLCQE 111 Y + +E+CI C C +C Q T +D ++ C+ CG C Sbjct: 138 FYYSDQEKCILCGKCVYVCSQLQGTDAIGFAERGFDTHIATPFDKGLEHSTCVSCGNCVS 197 Query: 112 ACPVDAIV 119 CPV A++ Sbjct: 198 VCPVGALM 205 >gi|331087633|ref|ZP_08336561.1| indolepyruvate ferredoxin oxidoreductase [Lachnospiraceae bacterium 3_1_46FAA] gi|330399812|gb|EGG79472.1| indolepyruvate ferredoxin oxidoreductase [Lachnospiraceae bacterium 3_1_46FAA] Length = 581 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 11/70 (15%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 Y ++C C +C + P ID C CGLC++ C Sbjct: 523 YIAHADKCKKCGMCMK---PGCPAMTKNPDG--------TIHIDDTMCTGCGLCKDLCKF 571 Query: 116 DAIVEGPNFE 125 DAI E Sbjct: 572 DAIELIKEGE 581 >gi|325478991|gb|EGC82092.1| electron transport complex, RnfABCDGE type, C subunit [Anaerococcus prevotii ACS-065-V-Col13] Length = 441 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 21/97 (21%), Positives = 33/97 (34%), Gaps = 9/97 (9%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPN---GEERCIACKLCEAICPAQAITIESGPRCHDGT 90 I P L + CI C C ++CP + + + Sbjct: 338 IAQPDLNRPVEKASNCILVLASDEAKPLDVDPCIRCSRCVSVCPVELLPLYIHK-FSLEE 396 Query: 91 RRTVRYDIDMIKCIYCGLCQEACP-----VDAIVEGP 122 R +++++ CI CG C CP V+AI G Sbjct: 397 RFEKAQELNIMDCIECGSCSFVCPSNRPLVEAIKFGK 433 >gi|293382625|ref|ZP_06628555.1| iron-sulfur cluster-binding protein [Enterococcus faecalis R712] gi|293386658|ref|ZP_06631233.1| iron-sulfur cluster-binding protein [Enterococcus faecalis S613] gi|312978974|ref|ZP_07790696.1| 4Fe-4S binding domain protein [Enterococcus faecalis DAPTO 516] gi|291079985|gb|EFE17349.1| iron-sulfur cluster-binding protein [Enterococcus faecalis R712] gi|291083910|gb|EFE20873.1| iron-sulfur cluster-binding protein [Enterococcus faecalis S613] gi|311288213|gb|EFQ66769.1| 4Fe-4S binding domain protein [Enterococcus faecalis DAPTO 516] Length = 149 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 15/69 (21%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + RY +++CI C C+ +C + + + ++CI CG C+ A Sbjct: 93 IFRYRLDKDKCINCGKCKKVCQMN---------------KDSVENCNHLECIRCGRCKNA 137 Query: 113 CPVDAIVEG 121 CPVDAI G Sbjct: 138 CPVDAISYG 146 >gi|297568998|ref|YP_003690342.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfurivibrio alkaliphilus AHT2] gi|296924913|gb|ADH85723.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfurivibrio alkaliphilus AHT2] Length = 270 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 23/74 (31%), Positives = 28/74 (37%), Gaps = 10/74 (13%) Query: 47 FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 FRGE E+ C C C C QAI R I ++C C Sbjct: 202 FRGEQV---AVVDEQLCNGCGACTEACQFQAIASRQTTDGD-------RAAISPLQCYGC 251 Query: 107 GLCQEACPVDAIVE 120 GLC+ ACP A+ Sbjct: 252 GLCRNACPTGALSM 265 >gi|269791768|ref|YP_003316672.1| hydrogenase, Fe-only [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099403|gb|ACZ18390.1| hydrogenase, Fe-only [Thermanaerovibrio acidaminovorans DSM 6589] Length = 585 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 3/67 (4%) Query: 59 GEERCIACKLCEAICP-AQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115 ++C+ C+ CE +C Q + + SG ++ ++ C +CG C CP Sbjct: 147 DMDKCVMCRRCETMCNEVQTVGVLSGVNRGFNAVVAPAFEKPLVDTVCTFCGQCAAVCPT 206 Query: 116 DAIVEGP 122 A+VE Sbjct: 207 GALVERD 213 >gi|218886148|ref|YP_002435469.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218757102|gb|ACL08001.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 263 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 19/81 (23%), Positives = 27/81 (33%), Gaps = 16/81 (19%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC--------- 103 L+ RC C C CPA AI + P ++ + +C Sbjct: 155 LQPGHPLMNRCGNCTSCADACPAGAIKGTALPNEPGAHYQSRDEALHFERCRTLLQGDFA 214 Query: 104 ----IY---CGLCQEACPVDA 117 I CG+C + CP A Sbjct: 215 RRPLIGHSVCGVCVKVCPWGA 235 >gi|33600307|ref|NP_887867.1| NAD-dependent formate dehydrogenase alpha subunit [Bordetella bronchiseptica RB50] gi|33567906|emb|CAE31819.1| NAD-dependent formate dehydrogenase alpha subunit [Bordetella bronchiseptica RB50] Length = 958 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 22/69 (31%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T SG +C+ CG C + Sbjct: 162 YFTYDPSKCIVCNRCVRACEETQGTFALTISGKGFASRVSPGQDQPFMDSECVSCGACVQ 221 Query: 112 ACPVDAIVE 120 ACP + E Sbjct: 222 ACPTSTLQE 230 >gi|330815876|ref|YP_004359581.1| hypothetical protein bgla_1g09420 [Burkholderia gladioli BSR3] gi|327368269|gb|AEA59625.1| hypothetical protein bgla_1g09420 [Burkholderia gladioli BSR3] Length = 982 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 21/69 (30%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T +G +C+ CG C Sbjct: 187 YFSYDPSKCIVCNRCVRACEETQGTFALTIAGRGFESRVAAGEGGSFMESECVSCGACVA 246 Query: 112 ACPVDAIVE 120 ACP + E Sbjct: 247 ACPTATLQE 255 >gi|313904993|ref|ZP_07838364.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Eubacterium cellulosolvens 6] gi|313470250|gb|EFR65581.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Eubacterium cellulosolvens 6] Length = 102 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 28/66 (42%), Gaps = 10/66 (15%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++C C LC +CP AI + G R D C CG+C + CP DAIV Sbjct: 47 DKCKQCLLCCPVCPDVAIPFKDGKRLEF----------DYDHCKGCGICAKVCPFDAIVM 96 Query: 121 GPNFEF 126 E Sbjct: 97 KEGIEP 102 >gi|282882494|ref|ZP_06291115.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Peptoniphilus lacrimalis 315-B] gi|281297636|gb|EFA90111.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Peptoniphilus lacrimalis 315-B] Length = 310 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 19/72 (26%), Positives = 26/72 (36%), Gaps = 15/72 (20%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + ++CI CK C C + D + +CI CGLC Sbjct: 234 FLQMKVNFDKCIGCKKCYKACKMDVDVCK---------------DPNHNECIRCGLCINV 278 Query: 113 CPVDAIVEGPNF 124 CPV+AI F Sbjct: 279 CPVEAIEFRYGF 290 >gi|269139847|ref|YP_003296548.1| NADPH-dependent glutamate synthase beta chain and related oxidoreductase [Edwardsiella tarda EIB202] gi|267985508|gb|ACY85337.1| NADPH-dependent glutamate synthase beta chain and related oxidoreductase [Edwardsiella tarda EIB202] gi|304559686|gb|ADM42350.1| Pyridine nucleotide-disulfide oxidoreductase family protein [Edwardsiella tarda FL6-60] Length = 545 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 18/59 (30%), Gaps = 9/59 (15%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C C C CP A + + Y D KC C C CP AI Sbjct: 489 NCFECDGCYGACPEGA---------VIKLGKGLHYRFDYDKCTGCQACYLQCPCHAIEM 538 >gi|237711984|ref|ZP_04542465.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|229454679|gb|EEO60400.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 508 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 13/51 (25%), Positives = 23/51 (45%), Gaps = 2/51 (3%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 ++C C CP AI + + + + ++ +CI CG C+ CP Sbjct: 442 VSCGNCARHCPTGAIQMIPEDENDESSPKIPV--VNTERCIGCGACENLCP 490 Score = 42.4 bits (98), Expect = 0.019, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 21/64 (32%), Gaps = 4/64 (6%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRY----DIDMIKCIYCGLCQEACPVDAIVEG 121 C C +CP AI + S + I + CG C CP AI Sbjct: 400 CAKCAEVCPTDAIHLTSLAEKSAIQIGHAVWIAQNCIVNTDKVSCGNCARHCPTGAIQMI 459 Query: 122 PNFE 125 P E Sbjct: 460 PEDE 463 Score = 40.5 bits (93), Expect = 0.078, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 28/84 (33%), Gaps = 3/84 (3%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 +K R + + C AC+LC ++CP Q + + + Sbjct: 335 DKKNPKRATSIVPAGARGLRHFAQHCTACQLCVSVCPNQVLRPSGDLKRLMQPEMSYERG 394 Query: 98 IDMIKCIYCGLCQEACPVDAIVEG 121 K C C E CP DAI Sbjct: 395 YCRPK---CAKCAEVCPTDAIHLT 415 >gi|283797938|ref|ZP_06347091.1| putative 4Fe-4S binding domain protein [Clostridium sp. M62/1] gi|291074405|gb|EFE11769.1| putative 4Fe-4S binding domain protein [Clostridium sp. M62/1] gi|295091868|emb|CBK77975.1| Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Clostridium cf. saccharolyticum K10] Length = 209 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 11/75 (14%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103 S F G A ++CI CKLC + CP + I I P I+ C Sbjct: 140 SFSFGGAQAKETGYFVTDKCIGCKLCYSKCPQKCIDITQKPVA-----------IEQEHC 188 Query: 104 IYCGLCQEACPVDAI 118 ++CG C E CP A+ Sbjct: 189 LHCGNCFEICPAGAV 203 >gi|255102532|ref|ZP_05331509.1| putative iron-sulfur-binding membrane protein [Clostridium difficile QCD-63q42] Length = 296 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 15/66 (22%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 Y EE+CI+C C+ +C +E + + ++CI CG C+ ACPV Sbjct: 243 YRLDEEKCISCGRCKKVCQMNIDPVE---------------NCNHLECIRCGRCKNACPV 287 Query: 116 DAIVEG 121 DAI G Sbjct: 288 DAISCG 293 >gi|242280658|ref|YP_002992787.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio salexigens DSM 2638] gi|242123552|gb|ACS81248.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfovibrio salexigens DSM 2638] Length = 304 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 11/65 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++CI C C CP A+ + R R ID KC+ CG+C C DA+ Sbjct: 239 DPQKCIGCGQCMEYCPFGAMHL-----------RDKRMRIDPKKCMGCGVCTNKCRKDAL 287 Query: 119 VEGPN 123 N Sbjct: 288 RLARN 292 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 13/25 (52%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGP 122 +D KCI CG C E CP A+ Sbjct: 238 VDPQKCIGCGQCMEYCPFGAMHLRD 262 >gi|212694726|ref|ZP_03302854.1| hypothetical protein BACDOR_04258 [Bacteroides dorei DSM 17855] gi|237727297|ref|ZP_04557778.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Bacteroides sp. D4] gi|212662705|gb|EEB23279.1| hypothetical protein BACDOR_04258 [Bacteroides dorei DSM 17855] gi|229434153|gb|EEO44230.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Bacteroides dorei 5_1_36/D4] Length = 606 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 30/83 (36%), Gaps = 12/83 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E+C C C IC AIT R +D C CG+C+ CP Sbjct: 6 DKEKCCGCNACGDICNQHAITFHLDREGFWYPR------VDPNLCTNCGMCERTCPQLVK 59 Query: 119 VEGPNFE------FATETRQELY 135 + ++ FA ++ E Sbjct: 60 YDQKHYHLQTPRVFAAYSKDEDI 82 >gi|187934157|ref|YP_001886542.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium botulinum B str. Eklund 17B] gi|187722310|gb|ACD23531.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Clostridium botulinum B str. Eklund 17B] Length = 1171 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 21/105 (20%), Positives = 32/105 (30%), Gaps = 20/105 (19%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI----------------- 80 F G+T+ RG +++CI C C +CP I Sbjct: 667 FMAGTTAYEKRGIAVNVPEWL-QDKCIQCNQCSYVCPHATIRPFLLNEEEKLKAPSSIKL 725 Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD--AIVEGPN 123 + + + C CG C E CP A++ P Sbjct: 726 IEPKALKSDEKLYYSIGVTPLDCTGCGNCVEVCPAPGKALIMKPQ 770 >gi|209551210|ref|YP_002283127.1| formate dehydrogenase, subunit alpha [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209536966|gb|ACI56901.1| formate dehydrogenase, alpha subunit [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 959 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 3/75 (4%) Query: 55 RYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRRT--VRYDIDMIKCIYCGLCQE 111 + +CI C C C Q + G++ + +C+ CG C + Sbjct: 170 YFTFDPSKCIVCSRCVRACEEVQGTFALTIEGRGFGSKVSSGAHEAFIDSECVSCGACVQ 229 Query: 112 ACPVDAIVEGPNFEF 126 ACP + E E Sbjct: 230 ACPTATLTEKSVIEI 244 >gi|186475492|ref|YP_001856962.1| formate dehydrogenase subunit alpha [Burkholderia phymatum STM815] gi|184191951|gb|ACC69916.1| formate dehydrogenase, alpha subunit [Burkholderia phymatum STM815] Length = 979 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 20/64 (31%), Gaps = 3/64 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T SG + +C+ CG C Sbjct: 186 YFTYDPSKCIVCNRCVRACEETQGTFALTISGRGFESRVAASESQPFMESECVSCGACVA 245 Query: 112 ACPV 115 ACP Sbjct: 246 ACPT 249 >gi|11545455|gb|AAG37855.1|AF298190_5 NAD-dependent formate dehydrogenase alpha subunit [Sinorhizobium meliloti] Length = 959 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 18/75 (24%), Positives = 25/75 (33%), Gaps = 3/75 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T SG + D +C+ CG C + Sbjct: 170 YFTYDSAKCIVCSRCVRACEEVQGTFALTISGRGFDSRVSAGMNEDFVSSECVSCGACVQ 229 Query: 112 ACPVDAIVEGPNFEF 126 ACP + E E Sbjct: 230 ACPTATLTEKSVIEI 244 >gi|78187471|ref|YP_375514.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Chlorobium luteolum DSM 273] gi|78167373|gb|ABB24471.1| Pyruvate:ferredoxin (flavodoxin) oxidoreductase [Chlorobium luteolum DSM 273] Length = 1184 Score = 43.2 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 19/73 (26%), Gaps = 16/73 (21%) Query: 58 NGEERCIACKLCEAICPA--------------QAITIESGPRCHDGTRRTVRYDID--MI 101 + CI C C +CP A ++Y I Sbjct: 689 WEPDLCIECGKCTMVCPHAAIRAKVYDPKYLENAPRTYKSMEAKGVNWEGMKYTIQVAPE 748 Query: 102 KCIYCGLCQEACP 114 C C +C CP Sbjct: 749 DCTGCKVCAHICP 761 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 14/55 (25%), Positives = 18/55 (32%), Gaps = 13/55 (23%) Query: 100 MIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVR 154 CI CG C CP AI YD + L N ++S + Sbjct: 691 PDLCIECGKCTMVCPHAAIRAK-------------VYDPKYLENAPRTYKSMEAK 732 >gi|315427993|dbj|BAJ49582.1| Fe-S oxidoreductase [Candidatus Caldiarchaeum subterraneum] Length = 669 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 40/123 (32%), Gaps = 19/123 (15%) Query: 47 FRGEHALRRYPN-GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY--------- 96 FR L G + C C CEA CPA A PR R + Sbjct: 277 FRSLTELGWMEKLGLDACTDCGRCEAACPAYAAGTPLSPRDIVQKLRRQLWRGDGLDEDV 336 Query: 97 -------DIDMIKCIYCGLCQEACPVDAIVEGPNFEF--ATETRQELYYDKERLLNNGDR 147 + ++ C C C EACPV E A +L K +L N R Sbjct: 337 FASGLIDEEEVWACTTCSACIEACPVLIRPMDYILEMRRALTLEGKLDKRKTAMLTNLSR 396 Query: 148 WES 150 + + Sbjct: 397 YGN 399 >gi|313148455|ref|ZP_07810648.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313137222|gb|EFR54582.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 289 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 19/64 (29%), Gaps = 12/64 (18%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + E C C C +CP AI +CI C C + C Sbjct: 213 TPWVEDESLCTHCGACAKMCPVSAIIKGDELNTD------------AERCIKCCACVKGC 260 Query: 114 PVDA 117 P A Sbjct: 261 PQKA 264 Score = 38.2 bits (87), Expect = 0.45, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 16/30 (53%) Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + D C +CG C + CPV AI++G Sbjct: 213 TPWVEDESLCTHCGACAKMCPVSAIIKGDE 242 >gi|257454853|ref|ZP_05620104.1| electron transport complex, rnfaBcdge type, b subunit [Enhydrobacter aerosaccus SK60] gi|257447786|gb|EEV22778.1| electron transport complex, rnfaBcdge type, b subunit [Enhydrobacter aerosaccus SK60] Length = 269 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 20/62 (32%), Positives = 21/62 (33%), Gaps = 10/62 (16%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E CI C C CP AI + I C C LC CPVD I Sbjct: 114 EDCIGCTKCIPACPVDAIIGSGK----------RMHTIFTDLCTGCELCLPPCPVDCIEL 163 Query: 121 GP 122 P Sbjct: 164 VP 165 Score = 37.4 bits (85), Expect = 0.69, Method: Composition-based stats. Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%) Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 A+A ++ P + +R I CI C C ACPVDAI Sbjct: 90 AEASKWQTDPATNRPM--EMRAIIREEDCIGCTKCIPACPVDAI 131 >gi|302876992|ref|YP_003845625.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Clostridium cellulovorans 743B] gi|307687683|ref|ZP_07630129.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Clostridium cellulovorans 743B] gi|302579849|gb|ADL53861.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Clostridium cellulovorans 743B] Length = 254 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 18/85 (21%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 N + C+ C +C+ +CP + I +E + KC+ C C CP + Sbjct: 181 FNVNDSCVGCNMCKKVCPIENIEMEDKKP------------VWKGKCVDCMACINICPQN 228 Query: 117 AIVEG------PNFEFATETRQELY 135 AI G + R+EL Sbjct: 229 AINIGTKTIKKNRYLNPYIKREELI 253 >gi|225181925|ref|ZP_03735359.1| flavodoxin/nitric oxide synthase [Dethiobacter alkaliphilus AHT 1] gi|225167365|gb|EEG76182.1| flavodoxin/nitric oxide synthase [Dethiobacter alkaliphilus AHT 1] Length = 274 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 11/64 (17%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + + +++CI+C C+ CP IT + G C+ C C+ CP Sbjct: 186 QMFHADKKCISCNRCQNKCPTGNITENKKGKPLWGH-----------NCLLCLTCEAVCP 234 Query: 115 VDAI 118 AI Sbjct: 235 TAAI 238 >gi|217420611|ref|ZP_03452116.1| formate dehydrogenase, NAD-dependent, alpha subunit [Burkholderia pseudomallei 576] gi|237813332|ref|YP_002897783.1| formate dehydrogenase, alpha subunit [Burkholderia pseudomallei MSHR346] gi|217396023|gb|EEC36040.1| formate dehydrogenase, NAD-dependent, alpha subunit [Burkholderia pseudomallei 576] gi|237504923|gb|ACQ97241.1| formate dehydrogenase, alpha subunit [Burkholderia pseudomallei MSHR346] Length = 984 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 25/85 (29%), Gaps = 10/85 (11%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T + + +C+ CG C Sbjct: 187 YFSYDPSKCIVCNRCVRACEETQGTFALTIASRGFESRVAASAGEAFMDSECVSCGACVA 246 Query: 112 ACPVDAIVE-------GPNFEFATE 129 ACP +VE P E T Sbjct: 247 ACPTATLVEKSVARLGQPEHEIVTT 271 >gi|167903758|ref|ZP_02490963.1| formate dehydrogenase, alpha subunit [Burkholderia pseudomallei NCTC 13177] Length = 984 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 25/85 (29%), Gaps = 10/85 (11%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T + + +C+ CG C Sbjct: 187 YFSYDPSKCIVCNRCVRACEETQGTFALTIASRGFESRVAASAGEAFMDSECVSCGACVA 246 Query: 112 ACPVDAIVE-------GPNFEFATE 129 ACP +VE P E T Sbjct: 247 ACPTATLVEKSVARLGQPEHEIVTT 271 >gi|118602142|ref|YP_903357.1| adenylylsulfate reductase, beta subunit [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567081|gb|ABL01886.1| dissimilatory adenylylsulfate reductase beta subunit [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 159 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 8/68 (11%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 RC C C ICP+ + I+ + Y+I+ C C C +ACP AI Sbjct: 7 MTRCDGCGHCVDICPSNIMHIDD--------KYRRAYNIEPNMCWECYSCVKACPHQAID 58 Query: 120 EGPNFEFA 127 +FA Sbjct: 59 VRGYADFA 66 >gi|78043414|ref|YP_360379.1| sigma-54 dependent transcriptional regulator [Carboxydothermus hydrogenoformans Z-2901] gi|77995529|gb|ABB14428.1| sigma-54 dependent transcriptional regulator [Carboxydothermus hydrogenoformans Z-2901] Length = 732 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 18/62 (29%), Positives = 25/62 (40%), Gaps = 11/62 (17%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 L+ +E+C AC C CP +AI IE ++ +CI CG C Sbjct: 3 RLQIVTTDKEKCKACYACVRNCPVKAIKIEEQKA-----------EVLEERCIACGNCVR 51 Query: 112 AC 113 C Sbjct: 52 VC 53 >gi|219670623|ref|YP_002461058.1| hydrogenase, Fe-only [Desulfitobacterium hafniense DCB-2] gi|219540883|gb|ACL22622.1| hydrogenase, Fe-only [Desulfitobacterium hafniense DCB-2] Length = 527 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 20/91 (21%), Positives = 29/91 (31%), Gaps = 14/91 (15%) Query: 39 EKGSTSPRFRGEHALRR----YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 E G RG + +++CI C C +C + Sbjct: 57 EPGGWPTNVRGRVPIDPENPALRRDDQKCILCGQCIEVCKTIQSVYGNYELPLK------ 110 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 + I CI CG C CP AI E + + Sbjct: 111 ----NEIPCINCGQCIHWCPSGAISEREDID 137 >gi|126438525|ref|YP_001059920.1| formate dehydrogenase, alpha subunit [Burkholderia pseudomallei 668] gi|126218018|gb|ABN81524.1| formate dehydrogenase, NAD-dependent, alpha subunit [Burkholderia pseudomallei 668] Length = 984 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 25/85 (29%), Gaps = 10/85 (11%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T + + +C+ CG C Sbjct: 187 YFSYDPSKCIVCNRCVRACEETQGTFALTIASRGFESRVAASAGEAFMDSECVSCGACVA 246 Query: 112 ACPVDAIVE-------GPNFEFATE 129 ACP +VE P E T Sbjct: 247 ACPTATLVEKSVARLGQPEHEIVTT 271 >gi|332299855|ref|YP_004441776.1| Electron transport complex protein rnfC [Porphyromonas asaccharolytica DSM 20707] gi|332176918|gb|AEE12608.1| Electron transport complex protein rnfC [Porphyromonas asaccharolytica DSM 20707] Length = 450 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 18/56 (32%), Gaps = 1/56 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 CI C C ++CP + ++ CI CG C CP Sbjct: 371 EMHDCIRCGKCVSVCPMGLNPAFLMRDTIYKDWESTEHNYIAD-CIECGSCSYTCP 425 >gi|300123855|emb|CBK25126.2| Iron-hydrogenase [Blastocystis hominis] Length = 759 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 24/90 (26%), Positives = 28/90 (31%), Gaps = 6/90 (6%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 P K + +AL CI CK C C DG V Sbjct: 132 QTPEMKEVLTESCDDSYAL---HRDMSLCIDCKRCARACSELQGMDVLVNNPLDGGFPVV 188 Query: 95 RYDIDMIK---CIYCGLCQEACPVDAIVEG 121 ++K CI CG C CP AI E Sbjct: 189 PTGHHLLKDTECISCGQCNVLCPTGAITEQ 218 >gi|257051628|ref|YP_003129461.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Halorhabdus utahensis DSM 12940] gi|256690391|gb|ACV10728.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Halorhabdus utahensis DSM 12940] Length = 108 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 2/69 (2%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + C+A C CP P + R+ + +CI C LC + C Sbjct: 37 THVAVDFDICLADGACLEDCPVDVFEWVETPGHPESERKADPAN--ETQCIDCMLCVDVC 94 Query: 114 PVDAIVEGP 122 PVDAI P Sbjct: 95 PVDAIDVNP 103 >gi|154491084|ref|ZP_02031025.1| hypothetical protein PARMER_01005 [Parabacteroides merdae ATCC 43184] gi|154088832|gb|EDN87876.1| hypothetical protein PARMER_01005 [Parabacteroides merdae ATCC 43184] Length = 262 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 30/87 (34%), Gaps = 11/87 (12%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 KG+ + +G + E+ C C+ C +CP AI+I D Sbjct: 169 EMKGNFPYKVKGPSTPQAPVTDEDLCTQCEYCIDVCPVSAISIVDDRIFSD--------- 219 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNF 124 CI C C + CP A + Sbjct: 220 --PATCIKCCACVKECPEGARTFDTPY 244 >gi|158319329|ref|YP_001511836.1| molybdopterin oxidoreductase [Alkaliphilus oremlandii OhILAs] gi|158139528|gb|ABW17840.1| molybdopterin oxidoreductase [Alkaliphilus oremlandii OhILAs] Length = 1192 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 26/95 (27%), Gaps = 10/95 (10%) Query: 29 KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKL-----CEAICPAQAITIESG 83 + P E+ + RC+ C C+ + + +E Sbjct: 531 RPAMAHLSPEERRRNFEEIVAGYTEEAAKKDAMRCLECGCHDVFECKLLDYSNEYKVEPE 590 Query: 84 PRCHDGTRRTV-----RYDIDMIKCIYCGLCQEAC 113 + R + KCI CGLC C Sbjct: 591 RLYGEMHYRMEDDGHPFIVRNSDKCILCGLCVRVC 625 Score = 42.0 bits (97), Expect = 0.029, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 3/65 (4%) Query: 59 GEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYD-IDMIKCIYCGLCQEACPV 115 ++CI C LC +C A + R D + + CI CG C CP Sbjct: 611 NSDKCILCGLCVRVCDEVIGATALGLIDRGFDTIVKPPFNQKLKETDCISCGQCISICPT 670 Query: 116 DAIVE 120 A+ E Sbjct: 671 GALGE 675 >gi|112982681|ref|NP_001036911.1| ribonuclease L inhibitor homolog [Bombyx mori] gi|44886002|dbj|BAD11812.1| ribonuclease L inhibitor homolog [Bombyx mori] Length = 614 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 23/68 (33%), Gaps = 3/68 (4%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP---N 123 K C C + G C + T I CI C C + CP DAI N Sbjct: 27 KRCRQECKKSCPVVRMGKLCIEVTPNDKIATISEELCIGCAFCVKKCPFDAITIINIPSN 86 Query: 124 FEFATETR 131 E T R Sbjct: 87 LEKHTTHR 94 >gi|21227088|ref|NP_633010.1| hypothetical protein MM_0986 [Methanosarcina mazei Go1] gi|20905415|gb|AAM30682.1| conserved protein [Methanosarcina mazei Go1] Length = 284 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 20/75 (26%), Gaps = 11/75 (14%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 E ++C C+ C C A+ C CG Sbjct: 52 EEVVFLVPEINPDKCTLCRGCSDFCRYNALAAIPNRILSF-----------PSLCHGCGG 100 Query: 109 CQEACPVDAIVEGPN 123 C CP AI E P Sbjct: 101 CSFVCPAGAIEEKPE 115 >gi|332297422|ref|YP_004439344.1| Fe-S cluster domain protein [Treponema brennaborense DSM 12168] gi|332180525|gb|AEE16213.1| Fe-S cluster domain protein [Treponema brennaborense DSM 12168] Length = 463 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 11/57 (19%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 C C +C CPA+AI + +G I +CI CG C CP A Sbjct: 16 HMCKGCTICVTGCPAEAIRVRNGKAV-----------IMEERCIDCGECIRHCPNKA 61 >gi|332159297|ref|YP_004424576.1| hypothetical protein PNA2_1657 [Pyrococcus sp. NA2] gi|331034760|gb|AEC52572.1| hypothetical protein PNA2_1657 [Pyrococcus sp. NA2] Length = 297 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 10/69 (14%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R + E CI C +C CP + I ++ Y ++ + C C Sbjct: 56 REHVGAKIARINPETCIRCGICRERCPYECIYMDEYGN----------YVVNELTCEGCN 105 Query: 108 LCQEACPVD 116 +C CPV Sbjct: 106 VCGLVCPVP 114 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 3/42 (7%) Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 T R H G + I+ CI CG+C+E CP + I Sbjct: 50 TNWEEEREHVGAK---IARINPETCIRCGICRERCPYECIYM 88 >gi|331092302|ref|ZP_08341130.1| hypothetical protein HMPREF9477_01773 [Lachnospiraceae bacterium 2_1_46FAA] gi|330401734|gb|EGG81313.1| hypothetical protein HMPREF9477_01773 [Lachnospiraceae bacterium 2_1_46FAA] Length = 56 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 11/64 (17%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C++C CEA CP AI+ + Y+I C+ CG C CP Sbjct: 1 MAHVISDECVSCGACEAECPVGAISQGAD-----------HYEISADACVDCGACAAQCP 49 Query: 115 VDAI 118 AI Sbjct: 50 TGAI 53 >gi|327400613|ref|YP_004341452.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein [Archaeoglobus veneficus SNP6] gi|327316121|gb|AEA46737.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Archaeoglobus veneficus SNP6] Length = 572 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 24/66 (36%), Gaps = 9/66 (13%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C C+ C + CPA AI + R C C LC CP +AI Sbjct: 445 DTCTLCRACASFCPANAIVRDIE---------NGRILFTHALCFACNLCVGVCPENAIKL 495 Query: 121 GPNFEF 126 +F Sbjct: 496 ENVLDF 501 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 19/72 (26%), Gaps = 15/72 (20%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 H +G C C C R I++ C CG C Sbjct: 221 YHVCGTAKSGIPGCSLCLSC---------------PTGSIERYNDGLKINLESCTGCGFC 265 Query: 110 QEACPVDAIVEG 121 CPV AI Sbjct: 266 AAVCPVSAIRNT 277 >gi|294675134|ref|YP_003575750.1| iron-sulfur cluster-binding protein [Prevotella ruminicola 23] gi|294472681|gb|ADE82070.1| iron-sulfur cluster-binding protein [Prevotella ruminicola 23] Length = 494 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 2/51 (3%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C C CP+ AI E P + + I+ CI CG C+ CP Sbjct: 428 VECGNCARHCPSGAI--EMVPLDENDEESPMVPAINEAACIGCGACEYVCP 476 Score = 37.4 bits (85), Expect = 0.60, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 22/76 (28%), Gaps = 1/76 (1%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM-IKCIYCGLCQEACP 114 + C C Q + E G ++ + + CG C CP Sbjct: 379 HGYCRPECTRCSEVCPAGAIQKVDKEEKTAIQIGHAVWIKKNCVPITDGVECGNCARHCP 438 Query: 115 VDAIVEGPNFEFATET 130 AI P E E+ Sbjct: 439 SGAIEMVPLDENDEES 454 Score = 37.0 bits (84), Expect = 0.79, Method: Composition-based stats. Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 13/75 (17%) Query: 47 FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 F + + E++C C LC C A I + ID +C+ C Sbjct: 206 FFARFSWLKIRFDEDKCKNCSLCSKNCKASCIDF-------------KTHSIDYTRCVVC 252 Query: 107 GLCQEACPVDAIVEG 121 G C ++C A+ Sbjct: 253 GNCIDSCKFGALKYT 267 Score = 34.7 bits (78), Expect = 4.8, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 29/84 (34%), Gaps = 3/84 (3%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 + N RC C+LC + CP Q + S + + +C C E CP Sbjct: 339 FQNLATRCTGCQLCVSECPNQVLRPSSDLMHLMQPTMSYEHGYCRPECTR---CSEVCPA 395 Query: 116 DAIVEGPNFEFATETRQELYYDKE 139 AI + E + K+ Sbjct: 396 GAIQKVDKEEKTAIQIGHAVWIKK 419 >gi|266622114|ref|ZP_06115049.1| sulfite reductase, subunit C [Clostridium hathewayi DSM 13479] gi|288866176|gb|EFC98474.1| sulfite reductase, subunit C [Clostridium hathewayi DSM 13479] Length = 353 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 19/99 (19%), Positives = 28/99 (28%), Gaps = 7/99 (7%) Query: 25 RYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGP 84 ++ P + + G + + +RCI C C C A Sbjct: 141 SHYHIKVAVAGCPNDCVKANFNDFGVMGIHKQIYDIDRCIGCGSCVDACEHHAT------ 194 Query: 85 RCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + D D C+ CG C CP A G Sbjct: 195 -GVLSLNANGKIDKDTCCCVGCGECSLICPTGAWSRGKQ 232 >gi|225025857|ref|ZP_03715049.1| hypothetical protein EUBHAL_00085 [Eubacterium hallii DSM 3353] gi|224956808|gb|EEG38017.1| hypothetical protein EUBHAL_00085 [Eubacterium hallii DSM 3353] Length = 448 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 29/82 (35%), Gaps = 14/82 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C C C AIC + + CI CG C CP AI Sbjct: 23 DEALCSQCGHCFAIC---------EEEIGVAAKYLLNPRETYQ-CIGCGQCSANCPEKAI 72 Query: 119 VEGPNFEFATETRQELYYDKER 140 + P+++ +EL D ++ Sbjct: 73 IGKPHYKIV----KELIKDPDK 90 >gi|148380154|ref|YP_001254695.1| ferredoxin [Clostridium botulinum A str. ATCC 3502] gi|153934260|ref|YP_001384452.1| iron-sulfur cluster-binding protein [Clostridium botulinum A str. ATCC 19397] gi|148289638|emb|CAL83741.1| putative ferredoxin [Clostridium botulinum A str. ATCC 3502] gi|152930304|gb|ABS35804.1| iron-sulfur cluster-binding protein [Clostridium botulinum A str. ATCC 19397] Length = 273 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 31/118 (26%), Positives = 44/118 (37%), Gaps = 25/118 (21%) Query: 36 YPFEKGSTSPRFRGEHALRRY--PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93 P+ K +G+ R P CI CKLC +CP +I E + + Sbjct: 174 TPYRKYYMPKDEKGQPIDIRKVKPETNNNCIDCKLCANLCPMGSIDFEDVTKLN------ 227 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESE 151 CI C C + CPV+A F+ + L + KE L N R+ E Sbjct: 228 -------GICIKCCACIKKCPVEA----KYFDDSGY----LKHKKE--LENNFRYRKE 268 >gi|189425893|ref|YP_001953070.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter lovleyi SZ] gi|189422152|gb|ACD96550.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter lovleyi SZ] Length = 267 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 22/101 (21%), Positives = 31/101 (30%), Gaps = 14/101 (13%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P G+ + R +RC C C CP IT++ Sbjct: 170 PGIPGNLPYKERPPLGGIAPETDPQRCTLCGACARACPTTVITVQQTVITD--------- 220 Query: 97 DIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 +CI C C +CP A N T R+ L + Sbjct: 221 ---AARCILCCACTRSCPTQARFV--NHPMVTARREMLVQN 256 >gi|120601154|ref|YP_965554.1| ferredoxin-dependent glutamate synthase [Desulfovibrio vulgaris DP4] gi|120561383|gb|ABM27127.1| ferredoxin-dependent glutamate synthase [Desulfovibrio vulgaris DP4] Length = 544 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 18/87 (20%), Positives = 27/87 (31%), Gaps = 15/87 (17%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPR---------CHDGTRRTVRYDIDMIK-- 102 + C C C A+CP AI + + + Y + Sbjct: 19 WQVEWDRATCALCGRCTAVCPVNAIELGVHRQRIVDAPVGLAKRPSNAHTVYHGVRQRTD 78 Query: 103 ----CIYCGLCQEACPVDAIVEGPNFE 125 C+ CG+C CP +AI E Sbjct: 79 AAYACVGCGMCSMVCPNNAIRPVHQAE 105 >gi|91772646|ref|YP_565338.1| cobyrinic acid a,c-diamide synthase [Methanococcoides burtonii DSM 6242] gi|91711661|gb|ABE51588.1| MinD /ParA family ATPase [Methanococcoides burtonii DSM 6242] Length = 284 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 19/64 (29%), Gaps = 11/64 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + +C C C C A+ I I C CG C CP AI Sbjct: 62 DKNKCDLCGKCSDFCQFNALAILPEDVM-----------IFPTLCHGCGGCTIVCPNKAI 110 Query: 119 VEGP 122 E Sbjct: 111 SEVD 114 >gi|34557450|ref|NP_907265.1| 2-oxoglutarate-acceptor oxidoreductase subunit OorD [Wolinella succinogenes DSM 1740] gi|34483166|emb|CAE10165.1| SUBUNIT OF 2-OXOGLUTARATE OXIDOREDUCTASE [Wolinella succinogenes] Length = 107 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 3/70 (4%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E RC AC LC ++CP+ + +++ + G + CI CG C+ CP Sbjct: 13 WVDESRCKACDLCVSLCPSGTLAMKADSKRVLGKMIAIT---HPESCIGCGECELHCPDF 69 Query: 117 AIVEGPNFEF 126 AI E+ Sbjct: 70 AIYVADRLEY 79 >gi|313498079|gb|ADR59445.1| Dihydropyrimidine dehydrogenase [Pseudomonas putida BIRD-1] Length = 424 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 4/65 (6%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV- 115 +E CI C C C + + DGT Y + +C+ C LCQ CPV Sbjct: 339 HIDQEACIGCGRCHIACEDTSHQAIASTLEADGTHA---YSVIEEECVGCNLCQITCPVE 395 Query: 116 DAIVE 120 + I Sbjct: 396 NCIEM 400 >gi|302392555|ref|YP_003828375.1| electron transfer flavoprotein alpha/beta-subunit [Acetohalobium arabaticum DSM 5501] gi|302204632|gb|ADL13310.1| Electron transfer flavoprotein alpha/beta-subunit [Acetohalobium arabaticum DSM 5501] Length = 399 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 21/67 (31%), Gaps = 12/67 (17%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + Y C C+ C CP AI I + C CG+C + Sbjct: 1 MSNYTIDYANCTLCEECIEACPFDAIEIVDDKVEIN------------AACKACGICVDT 48 Query: 113 CPVDAIV 119 CP I Sbjct: 49 CPEGVIQ 55 Score = 40.5 bits (93), Expect = 0.086, Method: Composition-based stats. Identities = 13/31 (41%), Positives = 14/31 (45%) Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 Y ID C C C EACP DAI + Sbjct: 1 MSNYTIDYANCTLCEECIEACPFDAIEIVDD 31 >gi|288961355|ref|YP_003451694.1| protein [Azospirillum sp. B510] gi|288913663|dbj|BAI75150.1| protein [Azospirillum sp. B510] Length = 507 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 16/57 (28%), Positives = 20/57 (35%), Gaps = 16/57 (28%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 G CI C C +CP D ++CI CGLC +AC Sbjct: 275 HQGLGDCIDCGHCVQVCPTG----------------IDIRDGIQMECIGCGLCVDAC 315 Score = 37.4 bits (85), Expect = 0.61, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 13/45 (28%) Query: 71 AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 + Q E R + CI CG C + CP Sbjct: 249 MVVTYQEWRGEGRAPLRKSEGWDTRTHQGLGDCIDCGHCVQVCPT 293 >gi|255307406|ref|ZP_05351577.1| indolepyruvate oxidoreductase subunit [Clostridium difficile ATCC 43255] Length = 633 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 10/60 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++CI CKLC +++G + +ID +C+ CG+C + CP AI Sbjct: 579 DHDKCIGCKLC----------LKTGCPALSFDKENKLSNIDRNQCVGCGVCAQVCPKQAI 628 >gi|224540477|ref|ZP_03681016.1| hypothetical protein BACCELL_05390 [Bacteroides cellulosilyticus DSM 14838] gi|224517919|gb|EEF87024.1| hypothetical protein BACCELL_05390 [Bacteroides cellulosilyticus DSM 14838] Length = 666 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 35/105 (33%), Gaps = 13/105 (12%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE--------SGPRCHDGTRRTVRYD 97 F+ L+ E+ C C LC CP + I E + + Sbjct: 226 NFKASIRLKAKSIDEKLCTGCGLCTTKCPTKKIPSEFNAGLGMRTAIYVPFPQAVPNKPV 285 Query: 98 IDMIKCIY-----CGLCQEACPVDAIVEGPNFEFATETRQELYYD 137 ID + C + CG+C++ CP AI +E + Sbjct: 286 IDRVHCTHFRTGRCGVCEKVCPTGAIRFDQEDRIISENVGAIVVT 330 Score = 40.1 bits (92), Expect = 0.095, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 1/62 (1%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 C+ C +C+ CP QAI E G ++ C CG C C +I Sbjct: 589 FSTCVGCFMCQTACPYQAIEREEIKDR-TGKVLKTVAKVNPGLCQGCGTCVAFCRSKSID 647 Query: 120 EG 121 Sbjct: 648 IQ 649 >gi|221636035|ref|YP_002523911.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermomicrobium roseum DSM 5159] gi|221157849|gb|ACM06967.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermomicrobium roseum DSM 5159] Length = 510 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 32/85 (37%), Gaps = 16/85 (18%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 EKG+ R LR + C+ ICP +A+ R D Sbjct: 42 EKGTFPHTRRSFTVLRCNHCDDAPCV------TICPTKALFR----------RPDGIVDF 85 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPN 123 D +CI C C +ACP DA+ P Sbjct: 86 DADRCIGCKSCMQACPYDALYIDPI 110 Score = 42.4 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 23/100 (23%), Positives = 32/100 (32%), Gaps = 12/100 (12%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 TI T FR + + +RCI CK C CP A+ I+ R Sbjct: 65 PCVTIC------PTKALFRRPDGIVDF--DADRCIGCKSCMQACPYDALYIDPITRTAAK 116 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE 129 + C CP AI+ G + +E Sbjct: 117 CNYCSHRVDQGLL----PACVVVCPEKAIIAGDLDDPTSE 152 Score = 42.0 bits (97), Expect = 0.027, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 28/80 (35%), Gaps = 7/80 (8%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQA-----ITIESGPRCHDGTRRTVRYDIDMIKCIY 105 A + + +CI C C C ++ + GT R +++C + Sbjct: 1 MARYGFVIDQRKCIGCHACTVACKSENLVPLGVYRTWVKYVEKGTFPHTRRSFTVLRCNH 60 Query: 106 CGL--CQEACPVDAIVEGPN 123 C C CP A+ P+ Sbjct: 61 CDDAPCVTICPTKALFRRPD 80 >gi|183231849|ref|XP_654696.2| hypothetical protein [Entamoeba histolytica HM-1:IMSS] gi|169802305|gb|EAL49308.2| hypothetical protein EHI_194430 [Entamoeba histolytica HM-1:IMSS] Length = 189 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 10/61 (16%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 +CI C C +CP + +T +CI CG C CPV AI+ Sbjct: 9 FNKCIGCLQCIRVCPTKVLTSTHMKSTLS----------FPERCISCGCCASVCPVGAII 58 Query: 120 E 120 Sbjct: 59 F 59 >gi|167581036|ref|ZP_02373910.1| formate dehydrogenase, alpha subunit [Burkholderia thailandensis TXDOH] Length = 984 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 25/85 (29%), Gaps = 10/85 (11%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T + + +C+ CG C Sbjct: 187 YFSYDPAKCIVCNRCVRACEETQGTFALTIAARGFDSRVAASAGDAFMDSECVSCGACVA 246 Query: 112 ACPVDAIVE-------GPNFEFATE 129 ACP ++E P E T Sbjct: 247 ACPTATLIEKSVARLGQPEHEVVTT 271 >gi|153953475|ref|YP_001394240.1| Fe-Fe hydrogenase 2 [Clostridium kluyveri DSM 555] gi|146346356|gb|EDK32892.1| Predicted Fe-Fe hydrogenase 2 [Clostridium kluyveri DSM 555] Length = 457 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 10/59 (16%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 E C C+ C +CP A G + IDM KCI CG C + C Sbjct: 1 MINIDRELCTGCRRCADVCPVDA----------IGGNKGEPQAIDMEKCIMCGQCIQIC 49 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 11/24 (45%), Positives = 13/24 (54%) Query: 95 RYDIDMIKCIYCGLCQEACPVDAI 118 +ID C C C + CPVDAI Sbjct: 1 MINIDRELCTGCRRCADVCPVDAI 24 >gi|70733834|ref|YP_257474.1| formate dehydrogenase subunit alpha [Pseudomonas fluorescens Pf-5] gi|68348133|gb|AAY95739.1| formate dehydrogenase, alpha subunit [Pseudomonas fluorescens Pf-5] Length = 965 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T SG + +C+ CG C + Sbjct: 168 YFDYDPSKCIVCNRCVRACEETQGTFALTISGRGFESRVAAAGGDNFLDSECVSCGACVQ 227 Query: 112 ACPVDAIVE 120 ACP ++E Sbjct: 228 ACPTATLME 236 >gi|15668692|ref|NP_247491.1| polyferredoxin MvhB [Methanocaldococcus jannaschii DSM 2661] gi|48474782|sp|P81292|Y51A_METJA RecName: Full=Uncharacterized polyferredoxin-like protein MJ0514.1 gi|2826292|gb|AAB98510.1| polyferredoxin (mvhB) [Methanocaldococcus jannaschii DSM 2661] Length = 163 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 9/58 (15%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++CI+C C ICP AIT S + I+ KC++CG C++ CP +AI Sbjct: 37 DKCISCGKCIEICPVNAITYSSDG---------LYITINKEKCVFCGKCKKVCPTNAI 85 Score = 36.2 bits (82), Expect = 1.6, Method: Composition-based stats. Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 6/72 (8%) Query: 55 RYPNGEERCIACKLCEAICPAQA------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 +E+C+ C C+ +CP A + + D +C C + Sbjct: 62 YITINKEKCVFCGKCKKVCPTNAIVIIRLRCEINEDARIIEVDKYEFIDYISERCASCLV 121 Query: 109 CQEACPVDAIVE 120 C CP +AI E Sbjct: 122 CLRNCPFNAIEE 133 Score = 34.7 bits (78), Expect = 4.2, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 21/39 (53%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYY 136 + KCI CG C E CPV+AI + + T +++ + Sbjct: 34 VKEDKCISCGKCIEICPVNAITYSSDGLYITINKEKCVF 72 Score = 33.5 bits (75), Expect = 9.3, Method: Composition-based stats. Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 11/60 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ERC +C +C CP AI + ID+ KC CG C+E CP++AI+ Sbjct: 114 ERCASCLVCLRNCPFNAIEE-----------YGSKIRIDINKCELCGKCEEICPLNAIIL 162 >gi|254181072|ref|ZP_04887670.1| formate dehydrogenase, alpha subunit [Burkholderia pseudomallei 1655] gi|184211611|gb|EDU08654.1| formate dehydrogenase, alpha subunit [Burkholderia pseudomallei 1655] Length = 984 Score = 42.8 bits (99), Expect = 0.014, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 25/85 (29%), Gaps = 10/85 (11%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T + + +C+ CG C Sbjct: 187 YFSYDPSKCIVCNRCVRACEETQGTFALTIASRGFESRVAASAGEAFMDSECVSCGACVA 246 Query: 112 ACPVDAIVE-------GPNFEFATE 129 ACP +VE P E T Sbjct: 247 ACPTATLVEKSVARLGQPEHEIVTT 271 >gi|312898042|ref|ZP_07757448.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Megasphaera micronuciformis F0359] gi|310620867|gb|EFQ04421.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Megasphaera micronuciformis F0359] Length = 645 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 19/89 (21%), Positives = 35/89 (39%), Gaps = 13/89 (14%) Query: 32 TTINYPFEKGSTSPRFRGEHALRR--YPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 +P S + + L + +++CI CK C + A+ + R + Sbjct: 562 IITKWPCVLKKFSKEDKEQFDLNMTPFVVDQDKCIGCKKCLS-TGCPALRFDDESRKSN- 619 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C+ CG+C + CPV+AI Sbjct: 620 ---------ISVDCVGCGVCAQVCPVNAI 639 >gi|302338379|ref|YP_003803585.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Spirochaeta smaragdinae DSM 11293] gi|301635564|gb|ADK80991.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Spirochaeta smaragdinae DSM 11293] Length = 377 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 19/85 (22%), Positives = 31/85 (36%), Gaps = 9/85 (10%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + C C+ CE C + ++ + + ++ C+ CG C AC D Sbjct: 192 HIDQALCRGCRRCERECANNGLEFDAAAK---------KMHVNQEHCVGCGRCLGACNFD 242 Query: 117 AIVEGPNFEFATETRQELYYDKERL 141 AIV + R+ Y K L Sbjct: 243 AIVFSGDNAVELLNRRMAEYTKAVL 267 >gi|298368912|ref|ZP_06980230.1| iron-sulfur cluster-binding protein [Neisseria sp. oral taxon 014 str. F0314] gi|298282915|gb|EFI24402.1| iron-sulfur cluster-binding protein [Neisseria sp. oral taxon 014 str. F0314] Length = 481 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 18/65 (27%), Gaps = 10/65 (15%) Query: 62 RCIACKLCEAICPA-----QAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQE 111 +CI C C CP A + P C CG C E Sbjct: 317 QCIRCGACMNHCPVYTRIGGAAYGTTYPGPIGEIISPHLLGLEATRDLPTACTMCGACVE 376 Query: 112 ACPVD 116 CPV Sbjct: 377 VCPVR 381 >gi|295115164|emb|CBL36011.1| Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [butyrate-producing bacterium SM4/1] Length = 209 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 24/75 (32%), Positives = 32/75 (42%), Gaps = 11/75 (14%) Query: 44 SPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKC 103 S F G A ++CI CKLC + CP + I I P I+ C Sbjct: 140 SFSFGGAQAKETGYFVTDKCIGCKLCYSKCPQKCIDITQKPVA-----------IEQEHC 188 Query: 104 IYCGLCQEACPVDAI 118 ++CG C E CP A+ Sbjct: 189 LHCGNCFEICPAGAV 203 >gi|264678475|ref|YP_003278382.1| electron transport complex, RnfABCDGE type, B [Comamonas testosteroni CNB-2] gi|262208988|gb|ACY33086.1| electron transport complex, RnfABCDGE type, B [Comamonas testosteroni CNB-2] Length = 220 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 20/60 (33%), Gaps = 10/60 (16%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C LC CP AI + + C C LC CPVD I Sbjct: 90 CIGCTLCIKACPTDAILGANKRMHS----------VSAEHCTGCELCIPVCPVDCIELVN 139 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C LC +ACP DAI Sbjct: 85 IDEAWCIGCTLCIKACPTDAI 105 >gi|253698846|ref|YP_003020035.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Geobacter sp. M21] gi|251773696|gb|ACT16277.1| pyruvate ferredoxin/flavodoxin oxidoreductase [Geobacter sp. M21] Length = 1183 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 27/91 (29%), Gaps = 16/91 (17%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ----------------AITIESG 83 +TS + A+ E+ CI C +C +CP A + Sbjct: 673 PTATSQYEKRNIAVDIPVWDEQLCIQCGICSFVCPHASIRMKVYDADKLSGAPATFKSAD 732 Query: 84 PRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 R ++ + C C C CP Sbjct: 733 ARGNEFKGMKCTVQVAPEDCTGCAACVANCP 763 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 13/39 (33%) Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERL 141 CI CG+C CP +I YD ++L Sbjct: 696 CIQCGICSFVCPHASIRMK-------------VYDADKL 721 >gi|307153306|ref|YP_003888690.1| NADH:ubiquinone oxidoreductase subunit G, iron-sulfur-binding protein [Cyanothece sp. PCC 7822] gi|306983534|gb|ADN15415.1| NADH:ubiquinone oxidoreductase, subunit G, iron-sulfur binding protein [Cyanothece sp. PCC 7822] Length = 238 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 22/69 (31%), Gaps = 4/69 (5%) Query: 55 RYPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDIDMI--KCIYCGLCQ 110 + RC+ C C +C A + R + C CG C Sbjct: 140 MFGIDHNRCVLCTRCVRVCDEIEGAHVWDVANRGAGDKIISGLNQPWGEVSACTSCGKCV 199 Query: 111 EACPVDAIV 119 +ACP AI Sbjct: 200 DACPTGAIF 208 >gi|167895371|ref|ZP_02482773.1| NAD-dependent formate dehydrogenase alpha subunit [Burkholderia pseudomallei 7894] gi|167919996|ref|ZP_02507087.1| NAD-dependent formate dehydrogenase alpha subunit [Burkholderia pseudomallei BCC215] Length = 984 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 25/85 (29%), Gaps = 10/85 (11%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T + + +C+ CG C Sbjct: 187 YFSYDPSKCIVCNRCVRACEETQGTFALTIASRGFESRVAASAGEAFMDSECVSCGACVA 246 Query: 112 ACPVDAIVE-------GPNFEFATE 129 ACP +VE P E T Sbjct: 247 ACPTATLVEKSVARLGQPEHEIVTT 271 >gi|154151233|ref|YP_001404851.1| glutamate synthase (NADPH) [Candidatus Methanoregula boonei 6A8] gi|153999785|gb|ABS56208.1| Glutamate synthase (NADPH) [Methanoregula boonei 6A8] Length = 503 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 14/81 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +C+ C C C E R ++ C+ C C CP DAI Sbjct: 15 DTGQCMNCGRCIENCSYGVYRREGD-----------RIVVNSRNCVACHRCTAFCPRDAI 63 Query: 119 VEGPNFEFATETRQELYYDKE 139 +E T+ R + +E Sbjct: 64 S---IYEKPTDYRSHPVWTRE 81 >gi|333030980|ref|ZP_08459041.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein [Bacteroides coprosuis DSM 18011] gi|332741577|gb|EGJ72059.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein [Bacteroides coprosuis DSM 18011] Length = 394 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 8/84 (9%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 ++ C CK CE ICP Q+IT+ ++G V + CI C LC++ C Sbjct: 1 MIDIQDKKECCGCKACEQICPKQSITMNVD---NEGFWYPVV---NHETCIECSLCEKVC 54 Query: 114 P--VDAIVEGPNFEFATETRQELY 135 P V+ P +A E Sbjct: 55 PELVERESITPISSYACYNLDETI 78 >gi|283850901|ref|ZP_06368187.1| NADH-quinone oxidoreductase, chain G [Desulfovibrio sp. FW1012B] gi|283573824|gb|EFC21798.1| NADH-quinone oxidoreductase, chain G [Desulfovibrio sp. FW1012B] Length = 806 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 4/89 (4%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93 +P K + + G + RCI C C A ++ GP + Sbjct: 123 RRWPGRKRTYLDQDLGPFV----QHEMNRCIHCYRCARFYQDYAGYLDFGPMQNANRVYF 178 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 R++ ++ + G + CP A+ + P Sbjct: 179 GRFENGPLESPFAGNLADICPTGALTDKP 207 >gi|257066815|ref|YP_003153071.1| electron transport complex, RnfABCDGE type, C subunit [Anaerococcus prevotii DSM 20548] gi|256798695|gb|ACV29350.1| electron transport complex, RnfABCDGE type, C subunit [Anaerococcus prevotii DSM 20548] Length = 439 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 22/97 (22%), Positives = 31/97 (31%), Gaps = 9/97 (9%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGE---ERCIACKLCEAICPAQAITIESGPRCHDGT 90 I P T L CI C C +CP + + Sbjct: 336 IAQPDLTRPTEKASNCVLVLASDEAEPLEVSPCIRCGRCVDVCPVYLLPLYIHK-FSLEE 394 Query: 91 RRTVRYDIDMIKCIYCGLCQEACP-----VDAIVEGP 122 R +++++ CI CG C CP V+AI G Sbjct: 395 RFEKAQELNIMDCIECGSCSFVCPSNRPLVEAIKFGK 431 Score = 38.2 bits (87), Expect = 0.42, Method: Composition-based stats. Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 5/44 (11%) Query: 103 CIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGD 146 CI CG C + CPV + +F+ E R ++K + LN D Sbjct: 368 CIRCGRCVDVCPVYLLPLY-IHKFSLEER----FEKAQELNIMD 406 >gi|298528807|ref|ZP_07016211.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfonatronospira thiodismutans ASO3-1] gi|298512459|gb|EFI36361.1| methyl-viologen-reducing hydrogenase delta subunit [Desulfonatronospira thiodismutans ASO3-1] Length = 1168 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 17/52 (32%), Positives = 20/52 (38%), Gaps = 2/52 (3%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 C C +C CP AI + G + ID C CG C ACP Sbjct: 949 CDGCGICIDRCPYAAIKYSACSGEKPGPDPGIW--IDEELCEGCGACVSACP 998 Score = 40.1 bits (92), Expect = 0.10, Method: Composition-based stats. Identities = 17/76 (22%), Positives = 23/76 (30%), Gaps = 12/76 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR-------TVRYDIDMIKCIY---- 105 +CIAC C C + Y ID C+ Sbjct: 102 FIDPAKCIACNWCTEACLKAVPDEFNLELKTRKCAYIYYRQSIPSTYVIDQKHCLRLTRG 161 Query: 106 -CGLCQEACPVDAIVE 120 CG+C++ CP AI Sbjct: 162 ICGICEKICPAGAIDF 177 >gi|225175193|ref|ZP_03729189.1| electron transport complex, RnfABCDGE type, C subunit [Dethiobacter alkaliphilus AHT 1] gi|225169369|gb|EEG78167.1| electron transport complex, RnfABCDGE type, C subunit [Dethiobacter alkaliphilus AHT 1] Length = 440 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 15/57 (26%), Positives = 21/57 (36%), Gaps = 1/57 (1%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + CI C C +CP + + G G + + CI CG C CP Sbjct: 363 DEIRPCIKCAKCVEVCPVSIMPLFIGGSVEHGM-YDKAEAFNAMDCIECGCCTYICP 418 Score = 33.9 bits (76), Expect = 8.3, Method: Composition-based stats. Identities = 8/18 (44%), Positives = 9/18 (50%) Query: 103 CIYCGLCQEACPVDAIVE 120 CI C C E CPV + Sbjct: 368 CIKCAKCVEVCPVSIMPL 385 >gi|218130044|ref|ZP_03458848.1| hypothetical protein BACEGG_01629 [Bacteroides eggerthii DSM 20697] gi|217987764|gb|EEC54091.1| hypothetical protein BACEGG_01629 [Bacteroides eggerthii DSM 20697] Length = 277 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 20/76 (26%), Positives = 23/76 (30%), Gaps = 12/76 (15%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G R E C C C CPA A ++ D KCI C Sbjct: 196 GVPMPRIPAVDTELCNHCGYCAVHCPASA------------IKKGDECYTDAEKCIRCCA 243 Query: 109 CQEACPVDAIVEGPNF 124 C + CP A F Sbjct: 244 CVKGCPQKARTFDTPF 259 >gi|195017213|ref|XP_001984558.1| GH14962 [Drosophila grimshawi] gi|193898040|gb|EDV96906.1| GH14962 [Drosophila grimshawi] Length = 611 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 3/68 (4%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP---N 123 K C C + G C + T + + CI CG+C + CP +AI N Sbjct: 27 KRCRQECKKSCPVVRMGKLCIEVTPTSKIASLSEELCIGCGICVKKCPFEAITIINLPSN 86 Query: 124 FEFATETR 131 E T R Sbjct: 87 LEKHTTHR 94 >gi|159028669|emb|CAO88140.1| hoxU [Microcystis aeruginosa PCC 7806] Length = 238 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 16/68 (23%), Positives = 21/68 (30%), Gaps = 4/68 (5%) Query: 56 YPNGEERCIACKLCEAICPA--QAITIESGPRCHDGTRRTVRYDID--MIKCIYCGLCQE 111 + RC+ C C +C A + R + C CG C Sbjct: 141 FGIDHNRCVLCTRCVRVCDEIEGAHVWDLAYRGEKDKIIAGMDQPWGSVSACTSCGKCVA 200 Query: 112 ACPVDAIV 119 ACP AI Sbjct: 201 ACPTGAIF 208 >gi|153814422|ref|ZP_01967090.1| hypothetical protein RUMTOR_00632 [Ruminococcus torques ATCC 27756] gi|317500140|ref|ZP_07958373.1| indolepyruvate ferredoxin oxidoreductase [Lachnospiraceae bacterium 8_1_57FAA] gi|145848818|gb|EDK25736.1| hypothetical protein RUMTOR_00632 [Ruminococcus torques ATCC 27756] gi|316898429|gb|EFV20467.1| indolepyruvate ferredoxin oxidoreductase [Lachnospiraceae bacterium 8_1_57FAA] Length = 585 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 23/70 (32%), Gaps = 11/70 (15%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 Y ++C C +C + P ID C CGLC++ C Sbjct: 527 YIAHADKCKKCGMCMK---PGCPAMTKNPDG--------TIHIDDTMCTGCGLCKDLCKF 575 Query: 116 DAIVEGPNFE 125 DAI E Sbjct: 576 DAIELIKEGE 585 >gi|124485065|ref|YP_001029681.1| formylmethanofuran dehydrogenase, subunit F [Methanocorpusculum labreanum Z] gi|124362606|gb|ABN06414.1| formylmethanofuran dehydrogenase, subunit F [Methanocorpusculum labreanum Z] Length = 387 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 7/67 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRC-------HDGTRRTVRYDIDMIKCIYCGLCQE 111 +C C +C +CP A+ +E + + +ID KC C +C E Sbjct: 76 DPAKCSYCGVCVILCPFNALGLEIDGEPSLPILEQEGFPQYDITAEIDESKCNRCTVCHE 135 Query: 112 ACPVDAI 118 CP DAI Sbjct: 136 VCPNDAI 142 Score = 40.9 bits (94), Expect = 0.063, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 35/83 (42%), Gaps = 3/83 (3%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 +L E+ C AC++C CP +AI ++ R + + + ID+ Sbjct: 195 VPFNAETVKSLGDIVWDEKLCNACQVCALACPTEAIKVD---RVVESNKLPGKVTIDIDN 251 Query: 103 CIYCGLCQEACPVDAIVEGPNFE 125 C C C+ CP +A+ F+ Sbjct: 252 CCTCAWCENTCPTEAVTIKKFFD 274 Score = 38.5 bits (88), Expect = 0.32, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 33/85 (38%), Gaps = 4/85 (4%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIA-CKLCEAICPAQAITIESGPRCHDGTR 91 T + T + E+C A C C +CP +AI + P G + Sbjct: 254 TCAWCENTCPTEAVTIKKFFDGEISFNAEKCPAGCSTCIEVCPCKAIYL-PSPASAVGMK 312 Query: 92 RTVRYDIDMIK--CIYCGLCQEACP 114 + I + K CIYCG C ACP Sbjct: 313 KEKEAVIAVSKELCIYCGACVNACP 337 Score = 38.5 bits (88), Expect = 0.33, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 1/68 (1%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD-IDMIKCIYCGLCQEACPVDAIV 119 C C +C CP +AI + G T +D KC YCG+C CP +A+ Sbjct: 37 NVCTGCGICSEACPKEAIVLGLVGAVRRGAVTTEAPISVDPAKCSYCGVCVILCPFNALG 96 Query: 120 EGPNFEFA 127 + E + Sbjct: 97 LEIDGEPS 104 Score = 37.8 bits (86), Expect = 0.58, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 37/93 (39%), Gaps = 11/93 (11%) Query: 59 GEERCIACKLCEAICPAQAITIE----------SGPRCHDGTRRTVRYDIDMIKCIYCGL 108 E +C C +C +CP AI + G + + +D KC CG+ Sbjct: 123 DESKCNRCTVCHEVCPNDAIIRDVPTFEGVDAADGKKRQAALTGKTTFVVDKEKCTVCGI 182 Query: 109 CQEACPVDAIVEGPNFEFATETRQELYYDKERL 141 C CP ++ P ++ ++ +D E+L Sbjct: 183 CAALCPALSVDRVPFNAETVKSLGDIVWD-EKL 214 Score = 37.4 bits (85), Expect = 0.67, Method: Composition-based stats. Identities = 20/86 (23%), Positives = 26/86 (30%), Gaps = 9/86 (10%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P E + + C C CE CP +A+TI+ Sbjct: 225 CPTEAIKVDRVVESNKLPGKVTIDIDNCCTCAWCENTCPTEAVTIKKFFDGEISF----- 279 Query: 96 YDIDMIKC-IYCGLCQEACPVDAIVE 120 + KC C C E CP AI Sbjct: 280 ---NAEKCPAGCSTCIEVCPCKAIYL 302 >gi|158520573|ref|YP_001528443.1| nitroreductase [Desulfococcus oleovorans Hxd3] gi|158509399|gb|ABW66366.1| nitroreductase [Desulfococcus oleovorans Hxd3] Length = 345 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 26/85 (30%), Positives = 34/85 (40%), Gaps = 7/85 (8%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 K E A R+ EE+C C C A CP Q + + G + RYD Sbjct: 3 KKFFQSTNNPEAAFARFVLDEEKCNGCGACVAACPMQILMVADGKAAPN-----QRYDHF 57 Query: 100 MIKCIYCGLCQEACPVDAIVEGPNF 124 +CI C C CP AIV ++ Sbjct: 58 --RCITCQNCVATCPNKAIVIEGDY 80 >gi|116747481|ref|YP_844168.1| molybdopterin oxidoreductase Fe4S4 region [Syntrophobacter fumaroxidans MPOB] gi|116696545|gb|ABK15733.1| molybdopterin oxidoreductase Fe4S4 region [Syntrophobacter fumaroxidans MPOB] Length = 359 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 23/71 (32%), Gaps = 3/71 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD---IDMIKCIYCGLCQE 111 +C+ C C C + ++ + C+ CG C + Sbjct: 147 MIVRDHNKCVLCGRCVRACLQVQVNGAIDVAARGSDSYITTFNNTNLMESNCVSCGQCVQ 206 Query: 112 ACPVDAIVEGP 122 ACPV A+ E Sbjct: 207 ACPVGALTEKK 217 >gi|14521071|ref|NP_126546.1| hypothetical protein PAB0579 [Pyrococcus abyssi GE5] gi|5458288|emb|CAB49777.1| ATPase, ParA type/MinD superfamily, containing an inserted ferredoxin domain [Pyrococcus abyssi GE5] Length = 297 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 18/69 (26%), Positives = 26/69 (37%), Gaps = 10/69 (14%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R + E CI C LC+ CP + I I+ Y ++ + C C Sbjct: 56 REHIGAKIARINSETCIRCGLCQMRCPYECIYIDDEGN----------YVVNELTCEGCN 105 Query: 108 LCQEACPVD 116 +C CPV Sbjct: 106 VCGLVCPVP 114 Score = 38.2 bits (87), Expect = 0.43, Method: Composition-based stats. Identities = 11/42 (26%), Positives = 14/42 (33%) Query: 82 SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + I+ CI CGLCQ CP + I Sbjct: 50 TEWEEEREHIGAKIARINSETCIRCGLCQMRCPYECIYIDDE 91 >gi|291522098|emb|CBK80391.1| electron transport complex, RnfABCDGE type, C subunit [Coprococcus catus GD/7] Length = 442 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 18/56 (32%), Gaps = 1/56 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 CI+C C CP + R ++ C+ CG C CP Sbjct: 367 EPTACISCGRCVNACPMN-LMPTKLEAATIYKRVDDLKKYSVMTCMECGCCAFVCP 421 >gi|284162685|ref|YP_003401308.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta domain protein [Archaeoglobus profundus DSM 5631] gi|284012682|gb|ADB58635.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein [Archaeoglobus profundus DSM 5631] Length = 337 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 25/85 (29%), Gaps = 16/85 (18%) Query: 50 EHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLC 109 L +C C C A C E C +CG+C Sbjct: 4 FEELEVDIILSGKCCYCGACGAFCKYIHYENE---------------RPVAENCEHCGVC 48 Query: 110 QEACPVDAIVEGP-NFEFATETRQE 133 + CPV+ E E E R++ Sbjct: 49 YDVCPVNYFSESKAEIEIFGEKRKD 73 >gi|291614821|ref|YP_003524978.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sideroxydans lithotrophicus ES-1] gi|291584933|gb|ADE12591.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Sideroxydans lithotrophicus ES-1] Length = 84 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 20/89 (22%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC------GLCQEACP 114 + CI C +CE CP AI+ Y ID KC C C E CP Sbjct: 7 DECINCDVCEPECPNGAISQGD-----------TIYIIDPNKCTECVGHYDTPQCVEVCP 55 Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLN 143 VD I P ET+++L E+L+ Sbjct: 56 VDCIPHDPAH---VETKEQLQAKYEKLMA 81 >gi|258405500|ref|YP_003198242.1| ferredoxin-dependent glutamate synthase [Desulfohalobium retbaense DSM 5692] gi|257797727|gb|ACV68664.1| ferredoxin-dependent glutamate synthase [Desulfohalobium retbaense DSM 5692] Length = 544 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 15/80 (18%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITI--------------ESGPRCHDGTRRTVRYDID 99 + +++C C C ++CP QAI + P +R D Sbjct: 19 WQIDWNKDKCTLCGRCTSVCPVQAIDLGVFRKREIATPLGLCGRPENSFSIFYGIRQHTD 78 Query: 100 MIK-CIYCGLCQEACPVDAI 118 K CI C +C CP DAI Sbjct: 79 PAKACIGCAMCSMVCPNDAI 98 Score = 38.2 bits (87), Expect = 0.36, Method: Composition-based stats. Identities = 11/21 (52%), Positives = 11/21 (52%) Query: 101 IKCIYCGLCQEACPVDAIVEG 121 KC CG C CPV AI G Sbjct: 26 DKCTLCGRCTSVCPVQAIDLG 46 >gi|219854097|ref|YP_002471219.1| hypothetical protein CKR_0754 [Clostridium kluyveri NBRC 12016] gi|219567821|dbj|BAH05805.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 466 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 22/59 (37%), Gaps = 10/59 (16%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 E C C+ C +CP A G + IDM KCI CG C + C Sbjct: 10 MINIDRELCTGCRRCADVCPVDA----------IGGNKGEPQAIDMEKCIMCGQCIQIC 58 Score = 36.2 bits (82), Expect = 1.5, Method: Composition-based stats. Identities = 12/30 (40%), Positives = 14/30 (46%) Query: 89 GTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 T +ID C C C + CPVDAI Sbjct: 4 MWTNTPMINIDRELCTGCRRCADVCPVDAI 33 >gi|150008416|ref|YP_001303159.1| putative ferredoxin iron-sulfur protein [Parabacteroides distasonis ATCC 8503] gi|255014151|ref|ZP_05286277.1| putative ferredoxin, putative iron-sulfur protein [Bacteroides sp. 2_1_7] gi|149936840|gb|ABR43537.1| putative ferredoxin, putative iron-sulfur protein [Parabacteroides distasonis ATCC 8503] Length = 262 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 11/87 (12%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 KG+ R +G + + C C+ C +CP AI++ D Sbjct: 169 EVKGNFPYRVKGPSTPQAPVTDNDLCTQCEYCVDVCPTHAISLADEGMYSD--------- 219 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNF 124 CI C C + CP A + Sbjct: 220 --PNLCIKCCACVKECPEGARTFDTPY 244 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 10/67 (14%), Positives = 18/67 (26%), Gaps = 4/67 (5%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 ++C C + + D+ C C C + CP AI Sbjct: 159 VSCMECLSALEVKGNFPYRVKGPSTPQAPVTDNDL----CTQCEYCVDVCPTHAISLADE 214 Query: 124 FEFATET 130 ++ Sbjct: 215 GMYSDPN 221 >gi|121535200|ref|ZP_01667015.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus carboxydivorans Nor1] gi|121306191|gb|EAX47118.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Thermosinus carboxydivorans Nor1] Length = 356 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 20/72 (27%), Positives = 25/72 (34%), Gaps = 11/72 (15%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 + C C+ C CP +AI + G I KCI CG C C DA+ Sbjct: 194 DNCRFCQKCLKWCPQEAIIEKDGKAY-----------IMTEKCIGCGECLAVCRFDAVKY 242 Query: 121 GPNFEFATETRQ 132 E R Sbjct: 243 DWGAESGFMQRS 254 >gi|121635126|ref|YP_975371.1| iron-sulphur protein [Neisseria meningitidis FAM18] gi|120866832|emb|CAM10590.1| conserved hypothetical iron-sulphur protein [Neisseria meningitidis FAM18] gi|325132382|gb|EGC55075.1| iron-sulfur cluster binding protein [Neisseria meningitidis M6190] gi|325138437|gb|EGC61003.1| iron-sulfur cluster binding protein [Neisseria meningitidis ES14902] gi|325198571|gb|ADY94027.1| iron-sulfur cluster binding protein [Neisseria meningitidis G2136] Length = 484 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 18/65 (27%), Gaps = 10/65 (15%) Query: 62 RCIACKLCEAICPA-----QAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQE 111 +CI C C CP A + P C CG C E Sbjct: 317 QCIRCGACMNHCPVYTRIGGAAYGTTYPGPIGEIISPHLLGLDATRDLPTACTMCGACVE 376 Query: 112 ACPVD 116 CPV Sbjct: 377 VCPVR 381 >gi|114773249|ref|ZP_01450484.1| oxidoreductase, FAD-binding protein [alpha proteobacterium HTCC2255] gi|114546368|gb|EAU49277.1| oxidoreductase, FAD-binding protein [alpha proteobacterium HTCC2255] Length = 943 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 8/64 (12%) Query: 101 IKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNG--DRWESEIVRNIVT 158 KCI CG C+ CP + P A R ++L G + + + + Sbjct: 539 DKCIECGFCEPVCPSKELTFTPRQRIAIWRR------IQQLEELGYLIDAQRQELAQLKH 592 Query: 159 DSPY 162 D Y Sbjct: 593 DYQY 596 Score = 37.4 bits (85), Expect = 0.60, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 32/103 (31%), Gaps = 21/103 (20%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTR--------------------- 91 L R + ++CI C CE +CP++ +T R R Sbjct: 531 LPRANDIVDKCIECGFCEPVCPSKELTFTPRQRIAIWRRIQQLEELGYLIDAQRQELAQL 590 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQEL 134 + + C GLC E CPV E E+ Sbjct: 591 KHDYQYYGIDTCAATGLCAERCPVGINTGDLIRELRAESHGRF 633 >gi|34540140|ref|NP_904619.1| ferredoxin [Porphyromonas gingivalis W83] gi|34396452|gb|AAQ65518.1| electron transport complex, RnfABCDGE type, B subunit [Porphyromonas gingivalis W83] Length = 290 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 24/84 (28%), Positives = 29/84 (34%), Gaps = 11/84 (13%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P + + CI C LC C +AITIE+ Sbjct: 193 PKSRRIFVSCVNKDKGGVAKKACSNACIGCSLCLKQCQFEAITIENNLSY---------- 242 Query: 97 DIDMIKCIYCGLCQEACPVDAIVE 120 ID KC C C E CP +AI E Sbjct: 243 -IDHTKCRMCRKCVEVCPTNAIHE 265 Score = 34.3 bits (77), Expect = 6.0, Method: Composition-based stats. Identities = 14/60 (23%), Positives = 18/60 (30%), Gaps = 9/60 (15%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 C+ C C AI I ++ C CG C +ACP I Sbjct: 140 CLGLGDCVDACGFDAIRINPTTLLP---------EVVEDACTACGACVKACPKSIIELRK 190 >gi|26990740|ref|NP_746165.1| dihydropyrimidine dehydrogenase [Pseudomonas putida KT2440] gi|24985736|gb|AAN69629.1|AE016596_7 dihydroorotate dehydrogenase family protein [Pseudomonas putida KT2440] Length = 424 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 4/65 (6%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV- 115 +E CI C C C + + DGT Y + +C+ C LCQ CPV Sbjct: 339 HIDQEACIGCGRCHIACEDTSHQAIASTLKADGTHA---YSVIEEECVGCNLCQITCPVE 395 Query: 116 DAIVE 120 + I Sbjct: 396 NCIEM 400 >gi|325285729|ref|YP_004261519.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein [Cellulophaga lytica DSM 7489] gi|324321183|gb|ADY28648.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Cellulophaga lytica DSM 7489] Length = 526 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 10/67 (14%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R + R NG +CI+C C C + +I C+ CG Sbjct: 435 RFKSRFRITTNG-GQCISCGNCSTYCEQGIDVRAYAQKGE---------NIVRSSCVGCG 484 Query: 108 LCQEACP 114 +C CP Sbjct: 485 VCSAVCP 491 >gi|320526975|ref|ZP_08028164.1| electron transport complex, RnfABCDGE type, C subunit [Solobacterium moorei F0204] gi|320132560|gb|EFW25101.1| electron transport complex, RnfABCDGE type, C subunit [Solobacterium moorei F0204] Length = 442 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 1/79 (1%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P ++ + G + C+ C C CP+ + H Sbjct: 339 VPNDQFVVMAQNNGLTIQKYEKPDTVACLRCGRCTETCPSG-LQPVRIASEHKSVDYDTL 397 Query: 96 YDIDMIKCIYCGLCQEACP 114 +D++ CI CGLC CP Sbjct: 398 MRLDVMNCIECGLCTYVCP 416 >gi|307352753|ref|YP_003893804.1| coenzyme F420 hydrogenase subunit gamma [Methanoplanus petrolearius DSM 11571] gi|307155986|gb|ADN35366.1| coenzyme F420 hydrogenase, subunit gamma [Methanoplanus petrolearius DSM 11571] Length = 314 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 11/62 (17%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L + C+ C C A CP +AIT+E G R +ID CI CG C Sbjct: 236 LMYDIINQGLCMGCGTCAASCPVRAITMEYG-----------RPNIDREMCIKCGACYAQ 284 Query: 113 CP 114 CP Sbjct: 285 CP 286 Score = 37.0 bits (84), Expect = 0.95, Method: Composition-based stats. Identities = 10/23 (43%), Positives = 13/23 (56%) Query: 98 IDMIKCIYCGLCQEACPVDAIVE 120 I+ C+ CG C +CPV AI Sbjct: 241 INQGLCMGCGTCAASCPVRAITM 263 >gi|258514628|ref|YP_003190850.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfotomaculum acetoxidans DSM 771] gi|257778333|gb|ACV62227.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfotomaculum acetoxidans DSM 771] Length = 1480 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E++C AC C CP I R I+ ++C CG C CP AI Sbjct: 1405 DEDKCAACLTCVRTCPFGVPKINERHRA----------QIESVQCQGCGTCVGECPNKAI 1454 Query: 119 VEGP 122 Sbjct: 1455 QLQH 1458 >gi|227499151|ref|ZP_03929286.1| pyruvate-flavodoxin oxidoreductase [Acidaminococcus sp. D21] gi|226904598|gb|EEH90516.1| pyruvate-flavodoxin oxidoreductase [Acidaminococcus sp. D21] Length = 1167 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 24/79 (30%), Gaps = 13/79 (16%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQA------------ITIESGPRCHDGTRRTVR 95 RG + E CI C C +ICP A + R Sbjct: 674 RGIAVMVPEWQ-SEHCIQCNQCASICPHAAIRPVLLTKEEMEKSDVPAKPALGAKDLYFR 732 Query: 96 YDIDMIKCIYCGLCQEACP 114 + + C C C +ACP Sbjct: 733 IAVSPMDCQGCRNCIDACP 751 >gi|187735463|ref|YP_001877575.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Akkermansia muciniphila ATCC BAA-835] gi|187425515|gb|ACD04794.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Akkermansia muciniphila ATCC BAA-835] Length = 588 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 18/54 (33%), Positives = 22/54 (40%), Gaps = 2/54 (3%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + C C CP +A+ R R D CI CG C+ ACPV A Sbjct: 475 MDCGACTEHCPTKALYTVPYIGRDGQEHRLPRLD--PSLCIGCGACEHACPVTA 526 Score = 39.3 bits (90), Expect = 0.16, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 25/63 (39%), Gaps = 2/63 (3%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY-CGLCQEACPVDAIV 119 + C C++C A CP + G + R D C+Y C C E CP AI Sbjct: 380 DICTGCQMCVANCPTHVLQPSYLQLGLKGFMKP-RMDFATKYCLYDCHRCAEVCPTGAIR 438 Query: 120 EGP 122 P Sbjct: 439 RMP 441 Score = 33.9 bits (76), Expect = 6.7, Method: Composition-based stats. Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 13/61 (21%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L R C C C C AQ + ++ Y ID +C+ C C + Sbjct: 243 LFRLGFDPASCKKCGKCVKSCKAQCLNLKE-------------YKIDSSRCVACYDCVRS 289 Query: 113 C 113 C Sbjct: 290 C 290 >gi|120437936|ref|YP_863622.1| iron-sulfur binding transmembrane protein [Gramella forsetii KT0803] gi|117580086|emb|CAL68555.1| iron-sulfur binding transmembrane protein [Gramella forsetii KT0803] Length = 531 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 9/53 (16%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 +CI+C C C + +I C+ CG+C CP Sbjct: 451 QCISCGNCSTYCEMGIDVRAYAQKGQ---------NIVRSSCVGCGICSAVCP 494 >gi|51244101|ref|YP_063985.1| iron-sulfur proteins [Desulfotalea psychrophila LSv54] gi|50875138|emb|CAG34978.1| related to iron-sulfur proteins [Desulfotalea psychrophila LSv54] Length = 261 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 11/62 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C+ C ++CPA I+ G + CI C C ++CP AI Sbjct: 185 DSTLCNFCETCTSVCPAGIISAVEGKIL-----------FEAGDCIRCCACIKSCPTSAI 233 Query: 119 VE 120 Sbjct: 234 SF 235 >gi|45357945|ref|NP_987502.1| putative ATPase RIL [Methanococcus maripaludis S2] gi|44920702|emb|CAF29938.1| RNase L inhibitor [Methanococcus maripaludis S2] Length = 590 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 23/73 (31%), Gaps = 1/73 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +RC + C C + + I C CG+C + CP AI Sbjct: 8 DYDRCQP-RRCSMECMKYCPGVRMEEETIVMDENLGKPIISEELCSGCGICTKRCPFGAI 66 Query: 119 VEGPNFEFATETR 131 E T+ R Sbjct: 67 RIIGLPEELTDDR 79 >gi|42523112|ref|NP_968492.1| molybdopterin oxidoreductase, iron-sulfur binding subunit [Bdellovibrio bacteriovorus HD100] gi|39575317|emb|CAE79485.1| molybdopterin oxidoreductase, iron-sulfur binding subunit [Bdellovibrio bacteriovorus HD100] Length = 1033 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 25/119 (21%), Positives = 33/119 (27%), Gaps = 19/119 (15%) Query: 23 CLRYFFKAKTT-INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIE 81 L + K K+T I +P S C C C C ++ Sbjct: 754 TLADYNKKKSTGIPHPHV-WSIWSGHEYSGHKWGMAVDLHSCTGCSSCVIACQSENNIPV 812 Query: 82 SGPR-----CHDGTRRTVRYDI----------DMIKCIYCGL--CQEACPVDAIVEGPN 123 G R R RY I + C +C C+ CPV A V Sbjct: 813 VGKRYVIEGREMHWLRIDRYYIGNPENAEAVFQPVMCQHCDNAPCETVCPVLATVHSDE 871 >gi|304387178|ref|ZP_07369421.1| iron-sulfur cluster-binding protein [Neisseria meningitidis ATCC 13091] gi|304338745|gb|EFM04856.1| iron-sulfur cluster-binding protein [Neisseria meningitidis ATCC 13091] Length = 484 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 18/65 (27%), Gaps = 10/65 (15%) Query: 62 RCIACKLCEAICPA-----QAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQE 111 +CI C C CP A + P C CG C E Sbjct: 317 QCIRCGACMNHCPVYTRIGGAAYGTTYPGPIGEIISPHLLGLDATRDLPTACTMCGACVE 376 Query: 112 ACPVD 116 CPV Sbjct: 377 VCPVR 381 >gi|297617707|ref|YP_003702866.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Syntrophothermus lipocalidus DSM 12680] gi|297145544|gb|ADI02301.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Syntrophothermus lipocalidus DSM 12680] Length = 279 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTR-RTVRYDIDMIKCIY--CGLCQEACPV 115 ++ CI C C +CP AI G + R + I++ + CG+C + CPV Sbjct: 175 EKDLCIQCGACARLCPVNAIIPVEGSVAGNFDREACLERHIELTRKKRYPCGICTKVCPV 234 Score = 37.0 bits (84), Expect = 0.88, Method: Composition-based stats. Identities = 11/22 (50%), Positives = 13/22 (59%) Query: 97 DIDMIKCIYCGLCQEACPVDAI 118 I+ CI CG C CPV+AI Sbjct: 173 MIEKDLCIQCGACARLCPVNAI 194 >gi|282879123|ref|ZP_06287882.1| 4Fe-4S binding domain protein [Prevotella buccalis ATCC 35310] gi|281298765|gb|EFA91175.1| 4Fe-4S binding domain protein [Prevotella buccalis ATCC 35310] Length = 503 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 6/67 (8%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC---PVDAIVE 120 + C C CPA AIT+ + + ++ +CI CG C+ C P AI Sbjct: 437 VECGNCARHCPAGAITMVPSKASNP--KSPKIPAVNTERCIGCGACENQCPARPFSAIY- 493 Query: 121 GPNFEFA 127 +E Sbjct: 494 VEGYEMH 500 Score = 38.2 bits (87), Expect = 0.39, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 23/92 (25%), Gaps = 4/92 (4%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 P + S C C +CP AI + Sbjct: 364 QCPNDVLRPSTDLMKLMQPTMSFERGYCHPGCTRCSNVCPTGAIRPITRTAKSATQIGHA 423 Query: 95 RY----DIDMIKCIYCGLCQEACPVDAIVEGP 122 + I + + CG C CP AI P Sbjct: 424 VWVKKNCIPLTDGVECGNCARHCPAGAITMVP 455 Score = 37.4 bits (85), Expect = 0.65, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 13/93 (13%) Query: 47 FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 F +L +C C LC C A I ++ ID +C+ C Sbjct: 210 FISRFSLLHPVLDAGKCTKCSLCAHRCKAACIDYKNHK-------------IDYSRCVAC 256 Query: 107 GLCQEACPVDAIVEGPNFEFATETRQELYYDKE 139 C + C DA+ + + ++ + Sbjct: 257 MDCIDTCQHDALHLQWRWNDMNRSNEDKIVKAD 289 >gi|257092939|ref|YP_003166580.1| methyl-viologen-reducing hydrogenase subunit delta [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257045463|gb|ACV34651.1| methyl-viologen-reducing hydrogenase delta subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 523 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 4/56 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 C C C A CP AI + PR +D C CG+C +CP Sbjct: 299 DAANCTGCDRCLADCPYAAIAMRPHPRRPG----LKLAVVDADLCAGCGICAGSCP 350 Score = 33.9 bits (76), Expect = 7.8, Method: Composition-based stats. Identities = 8/22 (36%), Positives = 8/22 (36%) Query: 101 IKCIYCGLCQEACPVDAIVEGP 122 C C C CP AI P Sbjct: 301 ANCTGCDRCLADCPYAAIAMRP 322 >gi|218510340|ref|ZP_03508218.1| NADH-ubiquinone oxidoreductase protein, chain G [Rhizobium etli Brasil 5] Length = 200 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 3/78 (3%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 ++ S R + N RCI C+ C +C + G ++ Sbjct: 126 DKRVFHSEDIRLSPVIIMNVN---RCIQCQRCVRMCEEVVGAVALGTIEKGMDTAVTGFE 182 Query: 98 IDMIKCIYCGLCQEACPV 115 + C CG C E CPV Sbjct: 183 GSLASCDQCGNCVEVCPV 200 >gi|149194115|ref|ZP_01871213.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Caminibacter mediatlanticus TB-2] gi|149136068|gb|EDM24546.1| 4Fe-4S ferredoxin, iron-sulfur binding protein [Caminibacter mediatlanticus TB-2] Length = 545 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 26/80 (32%), Gaps = 11/80 (13%) Query: 40 KGSTSPRFRGEHALRRY-PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 K ++ G + Y +++C C C +C A A + Sbjct: 396 KDYVDLKYEGNYIHYGYVKIDDKKCTLCMSCATVCNAGAFIADEKGALIFDATY------ 449 Query: 99 DMIKCIYCGLCQEACPVDAI 118 C CG C+ ACP I Sbjct: 450 ----CTDCGYCEVACPEKCI 465 Score = 39.7 bits (91), Expect = 0.15, Method: Composition-based stats. Identities = 14/58 (24%), Positives = 19/58 (32%), Gaps = 9/58 (15%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 C C +CP AI + + + C CG C CPV A+ Sbjct: 207 CGNCADVCPTNAILKDDESKELIFSHI---------DCDGCGGCVSVCPVGALDFTQI 255 >gi|83718922|ref|YP_442160.1| formate dehydrogenase subunit alpha [Burkholderia thailandensis E264] gi|167619114|ref|ZP_02387745.1| formate dehydrogenase, alpha subunit [Burkholderia thailandensis Bt4] gi|257138349|ref|ZP_05586611.1| formate dehydrogenase, alpha subunit [Burkholderia thailandensis E264] gi|83652747|gb|ABC36810.1| formate dehydrogenase, alpha subunit [Burkholderia thailandensis E264] Length = 984 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 17/85 (20%), Positives = 25/85 (29%), Gaps = 10/85 (11%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T + + +C+ CG C Sbjct: 187 YFSYDPAKCIVCNRCVRACEETQGTFALTIAARGFDSRVAASAGDAFMDSECVSCGACVA 246 Query: 112 ACPVDAIVE-------GPNFEFATE 129 ACP ++E P E T Sbjct: 247 ACPTATLIEKSVARLGQPEHEVVTT 271 >gi|148547035|ref|YP_001267137.1| dihydropyrimidine dehydrogenase [Pseudomonas putida F1] gi|148511093|gb|ABQ77953.1| dihydropyrimidine dehydrogenase (NADP+) / dihydrouracil dehydrogenase (NAD+) [Pseudomonas putida F1] Length = 424 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 4/65 (6%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV- 115 +E CI C C C + + DGT Y + +C+ C LCQ CPV Sbjct: 339 HIDQEACIGCGRCHIACEDTSHQAIASTLKADGTHA---YSVIEEECVGCNLCQITCPVE 395 Query: 116 DAIVE 120 + I Sbjct: 396 NCIEM 400 >gi|332883767|gb|EGK04047.1| hypothetical protein HMPREF9456_01075 [Dysgonomonas mossii DSM 22836] Length = 514 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 23/83 (27%), Positives = 31/83 (37%), Gaps = 13/83 (15%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV---DAIVE 120 C C CP QA+T+ G I C+ CG C+ CPV AI Sbjct: 432 TNCGACAEHCPTQAVTMIPYE----GHEGLTIPFITPDICVGCGGCEYICPVRPYRAIYV 487 Query: 121 GPNFE------FATETRQELYYD 137 N E F E ++++ D Sbjct: 488 EGNKEHKQRKAFKEEKKEDVVID 510 Score = 40.5 bits (93), Expect = 0.074, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 28/88 (31%), Gaps = 5/88 (5%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIA-CKLCEAICPAQAIT--IESGPRCHDGTRRTVRY 96 K + G + C C +C +CP+ A+ R T Sbjct: 363 KPAFMEYGLGGMMQPMMNYDKGFCNYNCTVCSDVCPSHALKSLTMEEKHMTQIGRVTFHE 422 Query: 97 DID--MIKCIYCGLCQEACPVDAIVEGP 122 DI + CG C E CP A+ P Sbjct: 423 DICVVHTEGTNCGACAEHCPTQAVTMIP 450 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 29/78 (37%), Gaps = 13/78 (16%) Query: 47 FRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 F + +L + E C +C C C A I + +D +C+ C Sbjct: 212 FLSKFSLFKIRINESLCNSCGSCATKCKASCIDS-------------KNHAVDYTRCVDC 258 Query: 107 GLCQEACPVDAIVEGPNF 124 C +C +AI P+F Sbjct: 259 FNCLSSCSKNAITFSPSF 276 >gi|323701421|ref|ZP_08113095.1| hydrogenase, Fe-only [Desulfotomaculum nigrificans DSM 574] gi|323533680|gb|EGB23545.1| hydrogenase, Fe-only [Desulfotomaculum nigrificans DSM 574] Length = 521 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 10/67 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +++CI C C C + D I C+ CG C CP AI Sbjct: 76 DDKKCILCGQCIEAC----------EKVQTVMGYYELPIKDDITCVNCGQCTLWCPTGAI 125 Query: 119 VEGPNFE 125 E + + Sbjct: 126 TERDDID 132 >gi|323703144|ref|ZP_08114798.1| molybdopterin oxidoreductase [Desulfotomaculum nigrificans DSM 574] gi|323531921|gb|EGB21806.1| molybdopterin oxidoreductase [Desulfotomaculum nigrificans DSM 574] Length = 349 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 15/68 (22%), Positives = 25/68 (36%), Gaps = 3/68 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV---RYDIDMIKCIYCGLCQE 111 + + +CI C C +C +G +R + C++CG C Sbjct: 139 FFERDQSKCILCGKCVQVCNEIVGAGAIQMVEINGVKRITPTSENTLHGTSCLFCGNCSS 198 Query: 112 ACPVDAIV 119 CPV A+ Sbjct: 199 VCPVGALN 206 >gi|296110016|ref|YP_003616965.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein [Methanocaldococcus infernus ME] gi|295434830|gb|ADG14001.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein [Methanocaldococcus infernus ME] Length = 613 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 11/64 (17%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 +YP + C C C +C + I I G+ Y+I CI CG C +AC Sbjct: 486 VKYPKVNDNCNGCGRCYEVCKLECIYI-------RGSYSYTNYNI----CIGCGKCIKAC 534 Query: 114 PVDA 117 P +A Sbjct: 535 PNEA 538 Score = 34.3 bits (77), Expect = 6.4, Method: Composition-based stats. Identities = 11/56 (19%), Positives = 20/56 (35%) Query: 75 AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 + + + HD V+Y C CG C E C ++ I ++ + Sbjct: 467 SGCPSSCIRAQIHDIGIIGVKYPKVNDNCNGCGRCYEVCKLECIYIRGSYSYTNYN 522 >gi|313124853|ref|YP_004035117.1| ferredoxin [Halogeometricum borinquense DSM 11551] gi|312291218|gb|ADQ65678.1| ferredoxin [Halogeometricum borinquense DSM 11551] Length = 106 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 27/78 (34%), Gaps = 2/78 (2%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100 G P + + C+A C CP T P ++ Sbjct: 24 GPVEPPEKLGIHGTHVAVDYDICLADGACLENCPVDVFTWVDTPDHPVSEQKVEPTR--E 81 Query: 101 IKCIYCGLCQEACPVDAI 118 +CI C LC + CPVDAI Sbjct: 82 DQCIDCMLCVDICPVDAI 99 >gi|225386321|ref|ZP_03756085.1| hypothetical protein CLOSTASPAR_00064 [Clostridium asparagiforme DSM 15981] gi|225047600|gb|EEG57846.1| hypothetical protein CLOSTASPAR_00064 [Clostridium asparagiforme DSM 15981] Length = 56 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 11/62 (17%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C++C C A CP AI+ +Y ID CI CG C CP AI Sbjct: 6 NDSCVSCGSCAAECPVGAISEGD-----------SQYVIDADTCIDCGTCAGTCPTGAIS 54 Query: 120 EG 121 EG Sbjct: 55 EG 56 >gi|210620573|ref|ZP_03292121.1| hypothetical protein CLOHIR_00064 [Clostridium hiranonis DSM 13275] gi|210155287|gb|EEA86293.1| hypothetical protein CLOHIR_00064 [Clostridium hiranonis DSM 13275] Length = 298 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 26/67 (38%), Gaps = 11/67 (16%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + + +C C C CP AIT E I+ KC+ C C +CP A Sbjct: 50 HDQSKCSYCLSCVVTCPNGAITHEDNKII-----------INEDKCVGCLTCVNSCPNRA 98 Query: 118 IVEGPNF 124 + ++ Sbjct: 99 LSYEGDY 105 >gi|168180404|ref|ZP_02615068.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum NCTC 2916] gi|182668801|gb|EDT80779.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum NCTC 2916] Length = 574 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 11/77 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + C C C CP +AI ++ +I +CI CG C Sbjct: 1 MNYIDISGLNCKNCYKCLRACPVKAIKFKNEKA-----------EIVEERCISCGRCLVI 49 Query: 113 CPVDAIVEGPNFEFATE 129 CP +A + P+ ++ + Sbjct: 50 CPQNAKKDKPDIKYVKD 66 >gi|153810352|ref|ZP_01963020.1| hypothetical protein RUMOBE_00733 [Ruminococcus obeum ATCC 29174] gi|149833531|gb|EDM88612.1| hypothetical protein RUMOBE_00733 [Ruminococcus obeum ATCC 29174] Length = 321 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 24/75 (32%), Gaps = 12/75 (16%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI--DMIKC 103 G + RC++C C C + + Y I + KC Sbjct: 155 HDFGIIGMTEPQYDPNRCVSCGACVKGCD----------KLSVDALKMENYRIVRNEEKC 204 Query: 104 IYCGLCQEACPVDAI 118 + CG+C CP A Sbjct: 205 VGCGVCVTKCPTRAW 219 >gi|149201032|ref|ZP_01878007.1| dihydropyrimidine dehydrogenase [Roseovarius sp. TM1035] gi|149145365|gb|EDM33391.1| dihydropyrimidine dehydrogenase [Roseovarius sp. TM1035] Length = 434 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 20/63 (31%), Gaps = 8/63 (12%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP-VDA 117 ++ CI C C A C E + + +C+ C LC CP Sbjct: 343 NQDDCIKCGRCYAAC-------EDTSHQAIAMSEDRVFTVKDDECVACNLCVNVCPIEGC 395 Query: 118 IVE 120 I Sbjct: 396 ITM 398 >gi|172059962|ref|YP_001807614.1| formate dehydrogenase subunit alpha [Burkholderia ambifaria MC40-6] gi|171992479|gb|ACB63398.1| formate dehydrogenase, alpha subunit [Burkholderia ambifaria MC40-6] Length = 983 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 20/69 (28%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T + +C+ CG C Sbjct: 187 YFAYDPSKCIVCNRCVRACEETQGTFALTIAARGFESRVAAGESESFMASECVSCGACVA 246 Query: 112 ACPVDAIVE 120 ACP + E Sbjct: 247 ACPTATLQE 255 >gi|86134455|ref|ZP_01053037.1| iron-sulfur cluster-binding protein [Polaribacter sp. MED152] gi|85821318|gb|EAQ42465.1| iron-sulfur cluster-binding protein [Polaribacter sp. MED152] Length = 540 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 10/67 (14%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R + R NG +CI+C C C + +I C+ CG Sbjct: 449 RFKSRFRITTNG-GQCISCGNCSTYCEQGIDVRAYAQKGE---------NIVRSSCVGCG 498 Query: 108 LCQEACP 114 +C CP Sbjct: 499 ICSAVCP 505 >gi|332296330|ref|YP_004438253.1| hydrogenase, Fe-only [Thermodesulfobium narugense DSM 14796] gi|332179433|gb|AEE15122.1| hydrogenase, Fe-only [Thermodesulfobium narugense DSM 14796] Length = 590 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 5/69 (7%) Query: 59 GEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 +CI C+ C C A+ + + I +C+ CG C CP Sbjct: 150 DPNKCILCQRCITACRVLQTVDALELYGNGYDAVVRPKGGLPLI-ETQCVACGQCALVCP 208 Query: 115 VDAIVEGPN 123 AI+E + Sbjct: 209 TGAILEKDD 217 >gi|325921027|ref|ZP_08182908.1| electron transport complex, RnfABCDGE type, B subunit [Xanthomonas gardneri ATCC 19865] gi|325548476|gb|EGD19449.1| electron transport complex, RnfABCDGE type, B subunit [Xanthomonas gardneri ATCC 19865] Length = 143 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 26/86 (30%), Positives = 30/86 (34%), Gaps = 11/86 (12%) Query: 39 EKGSTSPRFRGEHAL-RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYD 97 R RG H L + E CI C C CP AI G + + Sbjct: 67 VPARPYDRTRGTHTLPQVAWIVEADCIGCTKCIQACPVDAIV---------GGAKHMHTV 117 Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPN 123 I + C C LC ACPVD I Sbjct: 118 IAPL-CTGCELCLPACPVDCIELHTI 142 >gi|310780590|ref|YP_003968921.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ilyobacter polytropus DSM 2926] gi|309749913|gb|ADO84573.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Ilyobacter polytropus DSM 2926] Length = 59 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 24/65 (36%), Positives = 29/65 (44%), Gaps = 10/65 (15%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 Y E+ CIAC CE +CP + I+ G + ID CI CG C C Sbjct: 1 MSYRINEDECIACGACEPVCPVECISEVEGGKR----------RIDEAVCIDCGACAGVC 50 Query: 114 PVDAI 118 PVD I Sbjct: 51 PVDCI 55 >gi|304310596|ref|YP_003810194.1| 2-ketoglutarate: NADP oxidoreductase, gamma subunit [gamma proteobacterium HdN1] gi|301796329|emb|CBL44537.1| 2-ketoglutarate: NADP oxidoreductase, gamma subunit [gamma proteobacterium HdN1] Length = 592 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 19/84 (22%), Positives = 23/84 (27%), Gaps = 22/84 (26%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHD----------------------GTRRTVRYDI 98 ERCI C C +CP I + Sbjct: 499 ERCIECDACVDVCPVDCINFLENDEEEALRQNLRIPAANLTQSLYVSGDLPNQTGRIMVK 558 Query: 99 DMIKCIYCGLCQEACPVDAIVEGP 122 D C++CGLC E CP A Sbjct: 559 DENVCLHCGLCAERCPTAAWDMQK 582 Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 13/25 (52%) Query: 101 IKCIYCGLCQEACPVDAIVEGPNFE 125 +CI C C + CPVD I N E Sbjct: 499 ERCIECDACVDVCPVDCINFLENDE 523 >gi|283851797|ref|ZP_06369075.1| Cobyrinic acid ac-diamide synthase [Desulfovibrio sp. FW1012B] gi|283572917|gb|EFC20899.1| Cobyrinic acid ac-diamide synthase [Desulfovibrio sp. FW1012B] Length = 296 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 21/64 (32%), Gaps = 10/64 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C C LC +C A+ + ID +C C C CP AI Sbjct: 64 DPDLCDGCGLCRDLCRFDAVATTPDGQ----------CAIDPHRCEGCNTCVALCPRQAI 113 Query: 119 VEGP 122 P Sbjct: 114 AFLP 117 >gi|258405609|ref|YP_003198351.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfohalobium retbaense DSM 5692] gi|257797836|gb|ACV68773.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfohalobium retbaense DSM 5692] Length = 324 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 21/67 (31%), Gaps = 10/67 (14%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 + C C C C AI +D KC+ CG+C C Sbjct: 241 ICRVAEDSACTQCGQCVRKCQFAAIVENVAG----------TVTVDAEKCMGCGVCVNNC 290 Query: 114 PVDAIVE 120 P A+V Sbjct: 291 PTGALVL 297 >gi|254443050|ref|ZP_05056526.1| cytochrome c oxidase accessory protein CcoG [Verrucomicrobiae bacterium DG1235] gi|198257358|gb|EDY81666.1| cytochrome c oxidase accessory protein CcoG [Verrucomicrobiae bacterium DG1235] Length = 475 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 18/127 (14%), Positives = 28/127 (22%), Gaps = 16/127 (12%) Query: 4 FRCNVSFLFLKEFVGAFFLCLRYFFKAKTTINYP---FEKGSTSPRFRGEHALRRYPNGE 60 F + L L + F A ++ P Sbjct: 154 FERIIKRSLKHVIFAGLSLALAHMFMAYF-VSVPGLWKMMQEAPAENWKVFVFVFAYAAV 212 Query: 61 ERCIACKLCEAICPAQA------------ITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 E +C ++ G G R D++ CI C Sbjct: 213 LYFNFAWFREQLCIVICPYGRLQSALIDEHSMVIGYDEKRGEPRGKAKDVNAGDCIDCNR 272 Query: 109 CQEACPV 115 C + CP Sbjct: 273 CVQVCPT 279 Score = 35.8 bits (81), Expect = 1.9, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 20/69 (28%), Gaps = 16/69 (23%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 RGE + CI C C +CP ++CI Sbjct: 249 DEKRGEPRGKAKDVNAGDCIDCNRCVQVCPTG----------------IDIRQGLQMECI 292 Query: 105 YCGLCQEAC 113 C C +AC Sbjct: 293 GCSACIDAC 301 >gi|124028230|ref|YP_001013550.1| hypothetical protein Hbut_1380 [Hyperthermus butylicus DSM 5456] gi|123978924|gb|ABM81205.1| hypothetical protein Hbut_1380 [Hyperthermus butylicus DSM 5456] Length = 342 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 22/70 (31%), Gaps = 3/70 (4%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTR---RTVRYDIDMIKCIYCGLCQEAC 113 + RCI C LC C DG ++ C C C + C Sbjct: 111 KDFYARCIRCGLCYYACNYMGYHAIRLAGLRDGFSLLGAPTLDNLLTNPCTLCMECVKVC 170 Query: 114 PVDAIVEGPN 123 P A+ E P Sbjct: 171 PTGALAETPE 180 Score = 37.0 bits (84), Expect = 0.95, Method: Composition-based stats. Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 5/66 (7%) Query: 66 CKLCEAICPAQAITIE---SGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP--VDAIVE 120 CK C CP + E + H + V D + C CGLC +ACP AI Sbjct: 202 CKSCAKACPYGSEVFEFTFNEWGIHTRVKAKVVGDKVVTPCRGCGLCVQACPIGGSAIHI 261 Query: 121 GPNFEF 126 P E+ Sbjct: 262 LPRDEY 267 >gi|117619324|ref|YP_856034.1| putative glutamate synthase (NADPH) small subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560731|gb|ABK37679.1| pyridine nucleotide-disulphide oxidoreductase family protein [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 548 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 20/69 (28%), Gaps = 3/69 (4%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 RC +C C + + Y +D C CG C + CP Sbjct: 481 RYEAARCYSCGNCFEC---DGCYGSCPEQAIAKLGPGLGYQVDAELCTGCGACHDQCPCH 537 Query: 117 AIVEGPNFE 125 AI E Sbjct: 538 AIELRQPEE 546 >gi|134298338|ref|YP_001111834.1| hydrogenase [Desulfotomaculum reducens MI-1] gi|134051038|gb|ABO49009.1| hydrogenase, Fe-only [Desulfotomaculum reducens MI-1] Length = 520 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 10/67 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +++CI C C +C R + I C+ CG C CP AI Sbjct: 79 DDKKCILCGQCIEVCQ----------RVQTVYGYYELPIKNDITCVNCGQCTLWCPTAAI 128 Query: 119 VEGPNFE 125 E + + Sbjct: 129 TERDDID 135 >gi|332560639|ref|ZP_08414957.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Rhodobacter sphaeroides WS8N] gi|332274437|gb|EGJ19753.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Rhodobacter sphaeroides WS8N] Length = 469 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 24/68 (35%), Gaps = 16/68 (23%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 +RGE +R G CI C C +CP E CI Sbjct: 234 DWRGEPRGKRSETGRGDCIDCMACVNVCPMGIDIREGQQMA----------------CIT 277 Query: 106 CGLCQEAC 113 CGLC +AC Sbjct: 278 CGLCIDAC 285 Score = 34.3 bits (77), Expect = 6.0, Method: Composition-based stats. Identities = 15/58 (25%), Positives = 18/58 (31%), Gaps = 6/58 (10%) Query: 61 ERCIACKLCEAICPAQAITIES----GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + CI C A+ E R G R R + CI C C CP Sbjct: 207 QICIY--ACPWPRIQAALMDEETITVAYRDWRGEPRGKRSETGRGDCIDCMACVNVCP 262 >gi|331001666|ref|ZP_08325189.1| hypothetical protein HMPREF0491_00051 [Lachnospiraceae oral taxon 107 str. F0167] gi|330413387|gb|EGG92754.1| hypothetical protein HMPREF0491_00051 [Lachnospiraceae oral taxon 107 str. F0167] Length = 271 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 23/90 (25%), Positives = 28/90 (31%), Gaps = 11/90 (12%) Query: 30 AKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDG 89 K P++ + + E CIAC LC C AI + Sbjct: 183 KKLIDLVPYDTFTFVQCNSQDKGKAVKEVCEVGCIACTLCVKACEDDAIHMNGNVAL--- 239 Query: 90 TRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 ID KCI CG C CP I Sbjct: 240 --------IDYSKCINCGKCAAKCPTKVIQ 261 Score = 37.8 bits (86), Expect = 0.48, Method: Composition-based stats. Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 5/78 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGP-----RCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 E+C+AC C CP + I + +C+ + ++ + CI C LC +AC Sbjct: 167 DREKCVACGKCVEACPKKLIDLVPYDTFTFVQCNSQDKGKAVKEVCEVGCIACTLCVKAC 226 Query: 114 PVDAIVEGPNFEFATETR 131 DAI N ++ Sbjct: 227 EDDAIHMNGNVALIDYSK 244 Score = 36.6 bits (83), Expect = 1.0, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 11/64 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C +C +I I G +D KC+ CG C EACP I Sbjct: 138 CSYGCMGFGSCVKVCEFDSIHIVDGIAL-----------VDREKCVACGKCVEACPKKLI 186 Query: 119 VEGP 122 P Sbjct: 187 DLVP 190 >gi|313886233|ref|ZP_07819962.1| electron transport complex, RnfABCDGE type, C subunit [Porphyromonas asaccharolytica PR426713P-I] gi|312924304|gb|EFR35084.1| electron transport complex, RnfABCDGE type, C subunit [Porphyromonas asaccharolytica PR426713P-I] Length = 450 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 13/56 (23%), Positives = 18/56 (32%), Gaps = 1/56 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 CI C C ++CP + ++ CI CG C CP Sbjct: 371 EMHDCIRCGKCVSVCPMGLNPAFLMRDTIYKDWESTEHNYIAD-CIECGSCSYTCP 425 >gi|301648114|ref|ZP_07247874.1| putative ferredoxin-type protein NapF [Escherichia coli MS 146-1] gi|301073787|gb|EFK88593.1| putative ferredoxin-type protein NapF [Escherichia coli MS 146-1] Length = 176 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 37/114 (32%), Gaps = 9/114 (7%) Query: 12 FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71 + +E + ++ R F+A + P AL +C C LC Sbjct: 7 YYQELMSHRYVSRRGLFRAFVSAARPVTTPILPVHSLPPGAL-PDAQFRVQCTQCDLCIN 65 Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CP + + I+ C CGLC AC +A+ F+ Sbjct: 66 ACPMGILNRHEDGYP--------QLVIEFASCDGCGLCIAACSTEALRPQARFD 111 >gi|299531030|ref|ZP_07044443.1| electron transport complex, RnfABCDGE type, B subunit [Comamonas testosteroni S44] gi|298720987|gb|EFI61931.1| electron transport complex, RnfABCDGE type, B subunit [Comamonas testosteroni S44] Length = 220 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 18/60 (30%), Positives = 20/60 (33%), Gaps = 10/60 (16%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 CI C LC CP AI + + C C LC CPVD I Sbjct: 90 CIGCTLCIKACPTDAILGANKRMHS----------VIAEHCTGCELCIPVCPVDCIELVN 139 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 13/21 (61%), Positives = 14/21 (66%) Query: 98 IDMIKCIYCGLCQEACPVDAI 118 ID CI C LC +ACP DAI Sbjct: 85 IDEAWCIGCTLCIKACPTDAI 105 >gi|297568802|ref|YP_003690146.1| formate dehydrogenase, alpha subunit [Desulfurivibrio alkaliphilus AHT2] gi|296924717|gb|ADH85527.1| formate dehydrogenase, alpha subunit [Desulfurivibrio alkaliphilus AHT2] Length = 1414 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 1/66 (1%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 R +CI C+ C C A+ + + +G + C+ CG C + C Sbjct: 637 RAIDIDPNKCIYCQRCINSCEYDALELSATSLDEEGRPEGLVLR-FKDNCVSCGKCVDNC 695 Query: 114 PVDAIV 119 A+ Sbjct: 696 STGALN 701 Score = 33.9 bits (76), Expect = 6.6, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 33/112 (29%), Gaps = 7/112 (6%) Query: 17 VGAFFLCLRY-FFKAKTTIN---YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAI 72 LR + + + K + + A R G C+L E Sbjct: 553 FEGLETRLREKMPQRPHEVCRQDFDEVKLGFTDKMARREADRCLSCGCTAFDRCRLKELD 612 Query: 73 CPAQAITIESGPRCHDGTRRTVRY---DIDMIKCIYCGLCQEACPVDAIVEG 121 ++G + DID KCIYC C +C DA+ Sbjct: 613 IDYNVNLSKTGMGTVPVYPIDTSHRAIDIDPNKCIYCQRCINSCEYDALELS 664 >gi|289422180|ref|ZP_06424037.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Peptostreptococcus anaerobius 653-L] gi|289157406|gb|EFD06014.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Peptostreptococcus anaerobius 653-L] Length = 595 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 10/63 (15%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 Y +++CI CK C ++G + ID+ KC+ C +C + CPV Sbjct: 538 YRVDQDKCIGCKKC----------TKTGCPAISFKTDIKKSSIDINKCVGCSVCAQVCPV 587 Query: 116 DAI 118 AI Sbjct: 588 GAI 590 >gi|257459815|ref|ZP_05624921.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Campylobacter gracilis RM3268] gi|257442667|gb|EEV17804.1| pyruvate:ferredoxin (flavodoxin) oxidoreductase [Campylobacter gracilis RM3268] Length = 1193 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 26/135 (19%), Positives = 49/135 (36%), Gaps = 32/135 (23%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA--------------------QA 77 F+ G+T RG + + CI C C +CP + Sbjct: 668 FDAGTTRFEKRGVGVVVPKWIEQN-CIQCNQCAFVCPHAVIRAFLLDEKDEAAAPLNLKD 726 Query: 78 ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP--VDAIVEGP-NFEFATETRQ-- 132 +E+ + G + + + + C C LC E CP ++V P E A ++ Sbjct: 727 HLLEAKGKELKGLKY--KIQVSPLDCTGCALCAENCPSKEKSLVMVPLEEELAKGEQESA 784 Query: 133 ELYYD----KERLLN 143 + ++ K+ L++ Sbjct: 785 DFLFEHVRYKDDLMD 799 >gi|254672439|emb|CBA05819.1| conserved hypothetical iron-sulphur protein [Neisseria meningitidis alpha275] Length = 438 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 18/65 (27%), Gaps = 10/65 (15%) Query: 62 RCIACKLCEAICPA-----QAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQE 111 +CI C C CP A + P C CG C E Sbjct: 271 QCIRCGACMNHCPVYTRIGGAAYGTTYPGPIGEIISPHLLGLDATRDLPTACTMCGACVE 330 Query: 112 ACPVD 116 CPV Sbjct: 331 VCPVR 335 >gi|168184888|ref|ZP_02619552.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum Bf] gi|182672047|gb|EDT84008.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum Bf] Length = 574 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 11/77 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + C C C CP +AI ++ +I +CI CG C Sbjct: 1 MNYIDISGLNCKNCYKCLRACPVKAIKFKNEKA-----------EIVEERCISCGRCLVI 49 Query: 113 CPVDAIVEGPNFEFATE 129 CP +A + P+ ++ + Sbjct: 50 CPQNAKKDKPDIKYVKD 66 >gi|163857998|ref|YP_001632296.1| NAD-dependent formate dehydrogenase alpha subunit [Bordetella petrii DSM 12804] gi|163261726|emb|CAP44028.1| NAD-dependent formate dehydrogenase alpha subunit [Bordetella petrii] Length = 958 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 22/69 (31%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T SG +C+ CG C + Sbjct: 162 YFSYDPSKCIVCNRCVRACEETQGTFALTISGKGFDSRVAAGQSQPFLDSECVSCGACVQ 221 Query: 112 ACPVDAIVE 120 ACP + E Sbjct: 222 ACPTSTLQE 230 >gi|121533900|ref|ZP_01665726.1| Cobyrinic acid a,c-diamide synthase [Thermosinus carboxydivorans Nor1] gi|121307411|gb|EAX48327.1| Cobyrinic acid a,c-diamide synthase [Thermosinus carboxydivorans Nor1] Length = 288 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 26/102 (25%), Gaps = 19/102 (18%) Query: 28 FKAKTTINYPFEKGSTSPRFRGEHALRRYPN--------GEERCIACKLCEAICPAQAIT 79 + T+ + + RC C C +C AI Sbjct: 24 VRPGVTVADCDVEEPNCHLLLAPTWHQPDEEITVMTPVLDAGRCTGCGRCSEVCMFNAIA 83 Query: 80 IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 I I C CG C ACP A+ EG Sbjct: 84 IAGDKAV-----------IFDELCHSCGGCILACPASALAEG 114 >gi|146303291|ref|YP_001190607.1| pyruvate ferredoxin/flavodoxin oxidoreductase subunit delta [Metallosphaera sedula DSM 5348] gi|145701541|gb|ABP94683.1| pyruvate ferredoxin/flavodoxin oxidoreductase, delta subunit [Metallosphaera sedula DSM 5348] Length = 88 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 10/65 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++C C+LC C I +E ID C CG+C + CP AI Sbjct: 32 HYDKCTRCRLCFFYCVENTIDLEKNLYP----------RIDYDYCKGCGVCAQVCPTAAI 81 Query: 119 VEGPN 123 Sbjct: 82 EMIKE 86 >gi|59801304|ref|YP_208016.1| hypothetical protein NGO0906 [Neisseria gonorrhoeae FA 1090] gi|239998855|ref|ZP_04718779.1| hypothetical protein Ngon3_05146 [Neisseria gonorrhoeae 35/02] gi|240014230|ref|ZP_04721143.1| hypothetical protein NgonD_06232 [Neisseria gonorrhoeae DGI18] gi|240016666|ref|ZP_04723206.1| hypothetical protein NgonFA_05798 [Neisseria gonorrhoeae FA6140] gi|240080855|ref|ZP_04725398.1| hypothetical protein NgonF_06031 [Neisseria gonorrhoeae FA19] gi|240112781|ref|ZP_04727271.1| hypothetical protein NgonM_04217 [Neisseria gonorrhoeae MS11] gi|240115532|ref|ZP_04729594.1| hypothetical protein NgonPID1_04665 [Neisseria gonorrhoeae PID18] gi|240117827|ref|ZP_04731889.1| hypothetical protein NgonPID_05072 [Neisseria gonorrhoeae PID1] gi|240121793|ref|ZP_04734755.1| hypothetical protein NgonPI_08537 [Neisseria gonorrhoeae PID24-1] gi|240123383|ref|ZP_04736339.1| hypothetical protein NgonP_05480 [Neisseria gonorrhoeae PID332] gi|254493641|ref|ZP_05106812.1| iron-sulphur protein [Neisseria gonorrhoeae 1291] gi|260440656|ref|ZP_05794472.1| hypothetical protein NgonDG_06155 [Neisseria gonorrhoeae DGI2] gi|268594698|ref|ZP_06128865.1| iron-sulfur protein [Neisseria gonorrhoeae 35/02] gi|268596972|ref|ZP_06131139.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268598849|ref|ZP_06133016.1| iron-sulfur protein [Neisseria gonorrhoeae MS11] gi|268601207|ref|ZP_06135374.1| iron-sulfur protein [Neisseria gonorrhoeae PID18] gi|268603527|ref|ZP_06137694.1| iron-sulfur protein [Neisseria gonorrhoeae PID1] gi|268682008|ref|ZP_06148870.1| iron-sulfur protein [Neisseria gonorrhoeae PID332] gi|291043963|ref|ZP_06569679.1| iron-sulfur protein [Neisseria gonorrhoeae DGI2] gi|293399163|ref|ZP_06643328.1| iron-sulfur cluster-binding protein [Neisseria gonorrhoeae F62] gi|59718199|gb|AAW89604.1| conserved hypothetical protein [Neisseria gonorrhoeae FA 1090] gi|226512681|gb|EEH62026.1| iron-sulphur protein [Neisseria gonorrhoeae 1291] gi|268548087|gb|EEZ43505.1| iron-sulfur protein [Neisseria gonorrhoeae 35/02] gi|268550760|gb|EEZ45779.1| conserved hypothetical protein [Neisseria gonorrhoeae FA19] gi|268582980|gb|EEZ47656.1| iron-sulfur protein [Neisseria gonorrhoeae MS11] gi|268585338|gb|EEZ50014.1| iron-sulfur protein [Neisseria gonorrhoeae PID18] gi|268587658|gb|EEZ52334.1| iron-sulfur protein [Neisseria gonorrhoeae PID1] gi|268622292|gb|EEZ54692.1| iron-sulfur protein [Neisseria gonorrhoeae PID332] gi|291012426|gb|EFE04415.1| iron-sulfur protein [Neisseria gonorrhoeae DGI2] gi|291610577|gb|EFF39687.1| iron-sulfur cluster-binding protein [Neisseria gonorrhoeae F62] gi|317164144|gb|ADV07685.1| hypothetical protein NGTW08_0714 [Neisseria gonorrhoeae TCDC-NG08107] Length = 484 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 18/65 (27%), Gaps = 10/65 (15%) Query: 62 RCIACKLCEAICPA-----QAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQE 111 +CI C C CP A + P C CG C E Sbjct: 317 QCIRCGACMNHCPVYTRIGGAAYGTTYPGPIGEIISPHLLGLDATRDLPTACTMCGACVE 376 Query: 112 ACPVD 116 CPV Sbjct: 377 VCPVR 381 >gi|15677296|ref|NP_274450.1| hypothetical protein NMB1438 [Neisseria meningitidis MC58] gi|7226679|gb|AAF41799.1| conserved hypothetical protein [Neisseria meningitidis MC58] gi|261392301|emb|CAX49827.1| putative ferredoxin-like protein [Neisseria meningitidis 8013] gi|308389542|gb|ADO31862.1| conserved hypothetical iron-sulfur protein [Neisseria meningitidis alpha710] gi|316984564|gb|EFV63529.1| iron-sulfur cluster binding protein [Neisseria meningitidis H44/76] gi|325128504|gb|EGC51382.1| iron-sulfur cluster binding protein [Neisseria meningitidis N1568] gi|325134582|gb|EGC57226.1| iron-sulfur cluster binding protein [Neisseria meningitidis M13399] gi|325140618|gb|EGC63138.1| iron-sulfur cluster binding protein [Neisseria meningitidis CU385] gi|325142637|gb|EGC65028.1| iron-sulfur cluster binding protein [Neisseria meningitidis 961-5945] gi|325144743|gb|EGC67038.1| iron-sulfur cluster binding protein [Neisseria meningitidis M01-240013] gi|325199947|gb|ADY95402.1| iron-sulfur cluster binding protein [Neisseria meningitidis H44/76] gi|325205809|gb|ADZ01262.1| iron-sulfur cluster binding protein [Neisseria meningitidis M04-240196] Length = 484 Score = 42.8 bits (99), Expect = 0.015, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 18/65 (27%), Gaps = 10/65 (15%) Query: 62 RCIACKLCEAICPA-----QAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQE 111 +CI C C CP A + P C CG C E Sbjct: 317 QCIRCGACMNHCPVYTRIGGAAYGTTYPGPIGEIISPHLLGLDATRDLPTACTMCGACVE 376 Query: 112 ACPVD 116 CPV Sbjct: 377 VCPVR 381 >gi|325523850|gb|EGD02079.1| formate dehydrogenase, alpha subunit [Burkholderia sp. TJI49] Length = 910 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 20/69 (28%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T + +C+ CG C Sbjct: 187 YFTYDPSKCIVCNRCVRACEETQGTFALTIAARGFESRVAAGESESFMASECVSCGACVA 246 Query: 112 ACPVDAIVE 120 ACP + E Sbjct: 247 ACPTATLQE 255 >gi|322696015|gb|EFY87814.1| RNase L inhibitor of the ABC superfamily [Metarhizium acridum CQMa 102] Length = 680 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 23/80 (28%), Positives = 29/80 (36%), Gaps = 4/80 (5%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 Y +C K C C + SG C + T + I CI CG+C + CP Sbjct: 39 PYRLTAPQCRPRK-CRQECKKSCPVVRSGKLCIEVTPESRLAFISESLCIGCGICPKKCP 97 Query: 115 VDAIVEGP---NFEFATETR 131 DAI N E R Sbjct: 98 FDAITIINLPTNLENQVTHR 117 >gi|317968646|ref|ZP_07970036.1| ferredoxin [Synechococcus sp. CB0205] Length = 142 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 9/62 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +RC+ C +C ++CP+ A++ + R + + +C+ C C +CP +AI Sbjct: 80 DPQRCVDCGICSSVCPSGALSFTA---------PHWRLEFNAQRCLVCEQCIPSCPFEAI 130 Query: 119 VE 120 Sbjct: 131 AL 132 Score = 39.3 bits (90), Expect = 0.18, Method: Composition-based stats. Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 8/101 (7%) Query: 29 KAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA-----CKLCE---AICPAQAITI 80 K + T+++P E +R IA + E I A Sbjct: 2 KRRITLHFPREAVHQPITYRLAVEFDIAAKILRAQIAPNQSGTMVVELSGDIDDLDAAEQ 61 Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 + R + ID +C+ CG+C CP A+ Sbjct: 62 WLEGQGLGLNRASGEIAIDPQRCVDCGICSSVCPSGALSFT 102 >gi|310828219|ref|YP_003960576.1| 4Fe-4S ferredoxin [Eubacterium limosum KIST612] gi|308739953|gb|ADO37613.1| 4Fe-4S ferredoxin [Eubacterium limosum KIST612] Length = 262 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 23/73 (31%), Gaps = 12/73 (16%) Query: 49 GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 G + P E C C C ++CP AI + CI C Sbjct: 172 GMNYTPLAPEVSEDCTQCGECVSVCPVAAINPDDPTETD------------PDLCIRCCA 219 Query: 109 CQEACPVDAIVEG 121 C CPV+A Sbjct: 220 CVRICPVEARKFT 232 Score = 36.6 bits (83), Expect = 1.3, Method: Composition-based stats. Identities = 13/39 (33%), Positives = 13/39 (33%) Query: 87 HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 DG T C CG C CPV AI E Sbjct: 170 KDGMNYTPLAPEVSEDCTQCGECVSVCPVAAINPDDPTE 208 >gi|307353333|ref|YP_003894384.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Methanoplanus petrolearius DSM 11571] gi|307156566|gb|ADN35946.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanoplanus petrolearius DSM 11571] Length = 266 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 27/90 (30%), Gaps = 14/90 (15%) Query: 35 NYPFEKGSTSPRFRGEHALR--RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 P +RG+ L + + C C +C CP AI E+ Sbjct: 165 QIPGVNIPGCHPYRGDSKLWIVDFIAVSDECDQCGICAEGCPVGAIDPENCNLTDI---- 220 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 +CI C C CP A P Sbjct: 221 --------ERCITCCACIRNCPKGARTMKP 242 >gi|291458748|ref|ZP_06598138.1| putative 4Fe-4S binding domain protein [Oribacterium sp. oral taxon 078 str. F0262] gi|291418665|gb|EFE92384.1| putative 4Fe-4S binding domain protein [Oribacterium sp. oral taxon 078 str. F0262] Length = 274 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 11/100 (11%) Query: 19 AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78 A + L K + + +L R +E+CI+C C+ +CP Sbjct: 186 ALGIALAIMLKDNRAFCKYICPITVFLKPMSYFSLIRVSCDKEKCISCGKCKKLCPMDVD 245 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ + +G +CI C C CP DA+ Sbjct: 246 VTDNSRKRKNG-----------TECILCMECVRNCPKDAL 274 >gi|268610596|ref|ZP_06144323.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Ruminococcus flavefaciens FD-1] Length = 605 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 22/67 (32%), Gaps = 11/67 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +C +CK C R + I+ C CGLC + CP AI Sbjct: 550 DSAKCTSCKKCIKTLGC-----------PGIVLRDGKVAIENSLCTGCGLCSQVCPFGAI 598 Query: 119 VEGPNFE 125 N E Sbjct: 599 GGTGNAE 605 >gi|227484620|ref|ZP_03914936.1| electron transport complex protein [Anaerococcus lactolyticus ATCC 51172] gi|227237340|gb|EEI87355.1| electron transport complex protein [Anaerococcus lactolyticus ATCC 51172] Length = 266 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 11/64 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + CI C CE CP AI I +G ++ KC+ C C + CP + I Sbjct: 138 CDYGCIGCGTCEKTCPFDAIHIING-----------VAKVNRDKCVACKKCVDVCPKNII 186 Query: 119 VEGP 122 P Sbjct: 187 QLVP 190 >gi|225390043|ref|ZP_03759767.1| hypothetical protein CLOSTASPAR_03793 [Clostridium asparagiforme DSM 15981] gi|225043920|gb|EEG54166.1| hypothetical protein CLOSTASPAR_03793 [Clostridium asparagiforme DSM 15981] Length = 212 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 29/83 (34%), Gaps = 16/83 (19%) Query: 40 KGSTSPRFR-----GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 K FR G+ + + E C C LC + CP I P Sbjct: 135 KPIIRRSFRLGAGDGQAEPQEGYHITEDCDGCGLCLSQCPQNCIDSSRTP---------- 184 Query: 95 RYDIDMIKCIYCGLCQEACPVDA 117 + I C++CG C E CP A Sbjct: 185 -FKIQAEHCLHCGNCVEICPQKA 206 >gi|194098461|ref|YP_002001521.1| Iron-sulphur protein [Neisseria gonorrhoeae NCCP11945] gi|240125630|ref|ZP_04738516.1| Iron-sulphur protein [Neisseria gonorrhoeae SK-92-679] gi|240128086|ref|ZP_04740747.1| Iron-sulphur protein [Neisseria gonorrhoeae SK-93-1035] gi|268684219|ref|ZP_06151081.1| iron-sulfur protein [Neisseria gonorrhoeae SK-92-679] gi|268686475|ref|ZP_06153337.1| iron-sulfur protein [Neisseria gonorrhoeae SK-93-1035] gi|193933751|gb|ACF29575.1| Iron-sulphur protein [Neisseria gonorrhoeae NCCP11945] gi|268624503|gb|EEZ56903.1| iron-sulfur protein [Neisseria gonorrhoeae SK-92-679] gi|268626759|gb|EEZ59159.1| iron-sulfur protein [Neisseria gonorrhoeae SK-93-1035] Length = 484 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 18/65 (27%), Gaps = 10/65 (15%) Query: 62 RCIACKLCEAICPA-----QAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQE 111 +CI C C CP A + P C CG C E Sbjct: 317 QCIRCGACMNHCPVYTRIGGAAYGTTYPGPIGEIISPHLLGLDATRDLPTACTMCGACVE 376 Query: 112 ACPVD 116 CPV Sbjct: 377 VCPVR 381 >gi|218781711|ref|YP_002433029.1| nitroreductase [Desulfatibacillum alkenivorans AK-01] gi|218763095|gb|ACL05561.1| nitroreductase [Desulfatibacillum alkenivorans AK-01] Length = 347 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 7/66 (10%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++C C C +A I+ +R RYD +CI C C +CP +AI Sbjct: 22 DRDKCNGCGRC-----VKACPIQLLELYGKKSRPNQRYDHF--RCITCQNCAASCPQNAI 74 Query: 119 VEGPNF 124 ++ Sbjct: 75 TIKGDY 80 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 11/34 (32%), Positives = 14/34 (41%) Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 E R + +D KC CG C +ACP Sbjct: 4 EKYRHMSLPQARYAEFVLDRDKCNGCGRCVKACP 37 >gi|153938544|ref|YP_001391087.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum F str. Langeland] gi|152934440|gb|ABS39938.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum F str. Langeland] Length = 579 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 11/65 (16%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + + C C C CP +AI ++ I+M +CI CG C Sbjct: 1 MDYINFKKANCKNCYKCLRSCPVKAIKFKNHQA-----------KIEMERCILCGRCVLV 49 Query: 113 CPVDA 117 CP +A Sbjct: 50 CPQNA 54 >gi|124039622|dbj|BAF45408.1| reductive dehalogenase [uncultured bacterium] Length = 500 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 3/65 (4%) Query: 60 EERCIACKLCEAICPAQAI---TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + C C +C +CP+ AI + D T + Y ++ +C+ C C+ CP Sbjct: 389 HKFCETCGICTTVCPSNAIQVGPPQWSNNRWDNTPGYLGYRLNWGRCVLCTNCETYCPFF 448 Query: 117 AIVEG 121 + G Sbjct: 449 NMTNG 453 >gi|123438804|ref|XP_001310180.1| 64kDa iron hydrogenase [Trichomonas vaginalis G3] gi|121891939|gb|EAX97250.1| 64kDa iron hydrogenase, putative [Trichomonas vaginalis G3] Length = 591 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 23/65 (35%), Gaps = 3/65 (4%) Query: 59 GEERCIACKLCEAICPAQAIT---IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 +C+ C C C A T I + T + CI CG C CPV Sbjct: 155 DTSKCVLCGRCIRACEEVAGTSAIIFGNRAKKMRIQPTFGVTLQETSCIKCGQCTLYCPV 214 Query: 116 DAIVE 120 AI E Sbjct: 215 GAITE 219 >gi|77920495|ref|YP_358310.1| putative flavodoxin [Pelobacter carbinolicus DSM 2380] gi|77546578|gb|ABA90140.1| putative flavodoxin [Pelobacter carbinolicus DSM 2380] Length = 258 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 21/88 (23%), Positives = 28/88 (31%), Gaps = 12/88 (13%) Query: 35 NYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 + P G + R + + +CI C C A+CP+ AIT Sbjct: 159 DTPDMDGHVPYKDRPKFGGKAPQTDVGQCILCGKCAAVCPSGAIT------------VAD 206 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGP 122 D CI C C AC A Sbjct: 207 SVTTDAENCIMCCACTRACDNKARSFTH 234 >gi|16332000|ref|NP_442728.1| hypothetical protein sll0031 [Synechocystis sp. PCC 6803] gi|1001312|dbj|BAA10799.1| sll0031 [Synechocystis sp. PCC 6803] Length = 395 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 20/98 (20%), Positives = 29/98 (29%), Gaps = 18/98 (18%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKL--CEAICPAQAITI 80 Y + S + R+ ++C C +CPA AIT Sbjct: 95 TFDYSIQPPW--------LMVSLNDGEDPHFRKAQFDPQKCPPDCPRPCAQVCPAWAITS 146 Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ G + KC CG C CP I Sbjct: 147 DADEVVPTG--------VWAEKCYGCGRCLPICPQGII 176 >gi|88798170|ref|ZP_01113756.1| oxidoreductase, FAD-binding protein [Reinekea sp. MED297] gi|88778946|gb|EAR10135.1| oxidoreductase, FAD-binding protein [Reinekea sp. MED297] Length = 941 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 2/79 (2%) Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETR 131 + I + + D + +CI CG C++ CP P A Sbjct: 508 LLNPGVILNDDEKAHLKHLKPMPVADPVIDRCIECGFCEDVCPSQNYSLTPRQRIAAF-- 565 Query: 132 QELYYDKERLLNNGDRWES 150 +E+ K++ +N G W+ Sbjct: 566 REIQRRKDQQVNVGPDWDQ 584 >gi|222824446|ref|YP_002576020.1| iron-sulfur cluster binding protein [Campylobacter lari RM2100] gi|222539667|gb|ACM64768.1| putative iron-sulfur cluster binding protein [Campylobacter lari RM2100] Length = 471 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 17/89 (19%), Positives = 19/89 (21%), Gaps = 10/89 (11%) Query: 38 FEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQ----------AITIESGPRCH 87 R + RCI C C CP G Sbjct: 284 EVHIILFDHNRSKMLNDEDYYEALRCIRCGACMNFCPVYDKIGGHTYQSVYPGPIGEVIS 343 Query: 88 DGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + C CG C E CPV Sbjct: 344 PNLFGMQENGDILTFCSLCGRCSEVCPVR 372 Score = 33.5 bits (75), Expect = 9.5, Method: Composition-based stats. Identities = 9/23 (39%), Positives = 12/23 (52%) Query: 102 KCIYCGLCQEACPVDAIVEGPNF 124 +CI CG C CPV + G + Sbjct: 308 RCIRCGACMNFCPVYDKIGGHTY 330 >gi|332883757|gb|EGK04037.1| pyruvate:ferredoxin oxidoreductase [Dysgonomonas mossii DSM 22836] Length = 1187 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 19/83 (22%), Positives = 26/83 (31%), Gaps = 17/83 (20%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIES----------------GPRCHDGTR 91 RG A E CI C C +CP I + Sbjct: 675 RGVAAFVPVW-DAENCIQCNQCAYVCPHATIRPFVLDTEEQAKLPGDVTLLKAQGKQFDG 733 Query: 92 RTVRYDIDMIKCIYCGLCQEACP 114 R +D++ C+ CG C + CP Sbjct: 734 MGFRIQVDVLDCLGCGNCADICP 756 >gi|333030659|ref|ZP_08458720.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Bacteroides coprosuis DSM 18011] gi|332741256|gb|EGJ71738.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Bacteroides coprosuis DSM 18011] Length = 261 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 18/78 (23%), Positives = 28/78 (35%), Gaps = 12/78 (15%) Query: 37 PFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY 96 P + + ++ +P+ +E C C C +CP AI ++ Sbjct: 162 PQIQVKGNKPYKPYGRFPIFPSADETCNRCGKCARLCPVGAIPKDAPQLTD--------- 212 Query: 97 DIDMIKCIYCGLCQEACP 114 KCI CG C CP Sbjct: 213 ---PNKCISCGRCLVICP 227 >gi|328952489|ref|YP_004369823.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfobacca acetoxidans DSM 11109] gi|328452813|gb|AEB08642.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfobacca acetoxidans DSM 11109] Length = 352 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 12/65 (18%) Query: 57 PNGEERCIACKLCEA-ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 + C AC +C CP AI G Y + +CI CG+C CP Sbjct: 274 HIDPDSCQACGVCRDERCPMDAIEEGEG-----------VYQVIDNRCIGCGVCVITCPG 322 Query: 116 DAIVE 120 +AI Sbjct: 323 EAIAL 327 >gi|325849937|ref|ZP_08170976.1| electron transport complex, RnfABCDGE type, B subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325479961|gb|EGC83044.1| electron transport complex, RnfABCDGE type, B subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 265 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 11/64 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C+ C C C AI + +G +D KC+ CG C + CP + I Sbjct: 138 CNYGCVGCGSCVKACEFDAIHMVNG-----------VSVVDKEKCVACGACVKICPKNII 186 Query: 119 VEGP 122 P Sbjct: 187 ELVP 190 >gi|302390108|ref|YP_003825929.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Thermosediminibacter oceani DSM 16646] gi|302200736|gb|ADL08306.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Thermosediminibacter oceani DSM 16646] Length = 584 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 12/63 (19%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 Y EE+C C++C + I+ R I+ I C+ C +C + CP Sbjct: 528 YTISEEKCRRCRMCLRL---GCPAIQ---------VRGDVIFINPINCVGCAVCVQVCPF 575 Query: 116 DAI 118 AI Sbjct: 576 GAI 578 >gi|291279681|ref|YP_003496516.1| indolepyruvate ferredoxin oxidoreductase subunit alpha [Deferribacter desulfuricans SSM1] gi|290754383|dbj|BAI80760.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Deferribacter desulfuricans SSM1] Length = 586 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 24/63 (38%), Gaps = 9/63 (14%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 ++C CK+C AI + ID + C+ CG+C CP DAI Sbjct: 528 DKCKNCKICYEKFECPAIFEDKLANAA---------KIDELLCVNCGVCMSVCPFDAIAY 578 Query: 121 GPN 123 Sbjct: 579 VDE 581 >gi|241113248|ref|YP_002973083.1| ferredoxin III, nif-specific [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861456|gb|ACS59122.1| ferredoxin III, nif-specific [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 97 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 10/65 (15%) Query: 63 CIACKLCEAICPAQAIT----------IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 CI C C +C + +++G D R + +CI CG C Sbjct: 25 CIGCGRCFKVCSRDVMHLGGITDSGDIVDAGDGADDEVERLLMIVDHPGRCIGCGACARV 84 Query: 113 CPVDA 117 CP + Sbjct: 85 CPKNC 89 >gi|237734758|ref|ZP_04565239.1| conserved hypothetical protein [Mollicutes bacterium D7] gi|229382086|gb|EEO32177.1| conserved hypothetical protein [Coprobacillus sp. D7] Length = 577 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 3/68 (4%) Query: 59 GEERCIACKLCEAIC-PAQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115 +C+ C C C Q + I T+ YD M C+ CG C CPV Sbjct: 139 NTSKCVLCGRCVETCAKTQGLGILGFMNRGFKTKVGPVYDKSMNDVNCMQCGQCINVCPV 198 Query: 116 DAIVEGPN 123 A+ E Sbjct: 199 GALQEKEE 206 >gi|227873120|ref|ZP_03991412.1| possible [formate-C-acetyltransferase]-activating enzyme [Oribacterium sinus F0268] gi|227841014|gb|EEJ51352.1| possible [formate-C-acetyltransferase]-activating enzyme [Oribacterium sinus F0268] Length = 355 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 19/59 (32%), Positives = 20/59 (33%), Gaps = 11/59 (18%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 P CI C C CP +AI E G R KCI C C AC Sbjct: 110 HNPETRALCIHCGDCIPGCPTKAIYWEEG-----------RVAFSPEKCIGCDQCIHAC 157 Score = 35.5 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 9/18 (50%), Positives = 10/18 (55%) Query: 103 CIYCGLCQEACPVDAIVE 120 CI+CG C CP AI Sbjct: 118 CIHCGDCIPGCPTKAIYW 135 >gi|261400861|ref|ZP_05986986.1| iron-sulfur cluster-binding protein [Neisseria lactamica ATCC 23970] gi|313668550|ref|YP_004048834.1| iron-sulphur protein [Neisseria lactamica ST-640] gi|269209334|gb|EEZ75789.1| iron-sulfur cluster-binding protein [Neisseria lactamica ATCC 23970] gi|313006012|emb|CBN87471.1| conserved hypothetical iron-sulphur protein [Neisseria lactamica 020-06] Length = 484 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 18/65 (27%), Gaps = 10/65 (15%) Query: 62 RCIACKLCEAICPA-----QAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQE 111 +CI C C CP A + P C CG C E Sbjct: 317 QCIRCGACMNHCPVYTRIGGAAYGTTYPGPIGEIISPHLLGLDATRDLPTACTMCGACVE 376 Query: 112 ACPVD 116 CPV Sbjct: 377 VCPVR 381 >gi|170754864|ref|YP_001781378.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum B1 str. Okra] gi|169120076|gb|ACA43912.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum B1 str. Okra] Length = 574 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 11/77 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + C C C CP +AI ++ +I +CI CG C Sbjct: 1 MNYIDISGLNCKNCYKCLRACPVKAIKFKNEKA-----------EIVEERCISCGRCLVI 49 Query: 113 CPVDAIVEGPNFEFATE 129 CP +A + P+ ++ + Sbjct: 50 CPQNAKKDKPDIKYVKD 66 >gi|169827564|ref|YP_001697722.1| dihydropyrimidine dehydrogenase [Lysinibacillus sphaericus C3-41] gi|168992052|gb|ACA39592.1| dihydropyrimidine dehydrogenase [Lysinibacillus sphaericus C3-41] Length = 420 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 19/63 (30%), Gaps = 5/63 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117 + CI C C C +G C+ C LC CPVD A Sbjct: 338 NNDVCINCNKCHIACE-DTSHQCIDLYTENGRPLLKV---REEDCVGCNLCSIVCPVDGA 393 Query: 118 IVE 120 I Sbjct: 394 ISM 396 >gi|167769723|ref|ZP_02441776.1| hypothetical protein ANACOL_01057 [Anaerotruncus colihominis DSM 17241] gi|167668084|gb|EDS12214.1| hypothetical protein ANACOL_01057 [Anaerotruncus colihominis DSM 17241] Length = 177 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 5/60 (8%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 + C+ C A+A + R G + ID CI CGLC ACP A+ P+ Sbjct: 54 VMCQHCSDASCAKACPRGAIKRGAAGEQL-----IDDALCIGCGLCVRACPFGAVYLRPD 108 >gi|153941336|ref|YP_001391085.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum F str. Langeland] gi|152937232|gb|ABS42730.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum F str. Langeland] gi|295319132|gb|ADF99509.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum F str. 230613] Length = 574 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 11/77 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + C C C CP +AI ++ +I +CI CG C Sbjct: 1 MNYIDISGLNCKNCYKCLRACPVKAIKFKNEKA-----------EIVEERCISCGRCLVI 49 Query: 113 CPVDAIVEGPNFEFATE 129 CP +A + P+ ++ + Sbjct: 50 CPQNAKKDKPDIKYVKD 66 >gi|152990327|ref|YP_001356049.1| ferredoxin-like protein [Nitratiruptor sp. SB155-2] gi|151422188|dbj|BAF69692.1| ferredoxin-like protein [Nitratiruptor sp. SB155-2] Length = 354 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 24/63 (38%), Gaps = 11/63 (17%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C CEAICPA AI + I KCI CG C CP +A+ Sbjct: 13 YSKFSTCDRCEAICPADAIETKEAGVA-----------IYQDKCIECGGCVGVCPTEALS 61 Query: 120 EGP 122 Sbjct: 62 LSD 64 Score = 35.5 bits (80), Expect = 2.5, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 39/120 (32%), Gaps = 19/120 (15%) Query: 6 CNVSFLFLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIA 65 + + F L+ K P E R+ + +E C Sbjct: 201 KAIKEKSIPNKRKLLFTLLKKMGK-------PHEYKMLENRY---LSFTSDKTIDESCDN 250 Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 C +C ICP +A++ R+ D + C+ C LC + C +I F+ Sbjct: 251 CSICYRICPTEALSTT---------RKMDAILFDPLLCVRCHLCHDVCEKKSIQLAETFD 301 >gi|150007052|ref|YP_001301795.1| putative ferredoxin-type protein [Parabacteroides distasonis ATCC 8503] gi|298377473|ref|ZP_06987425.1| ferredoxin-type protein [Bacteroides sp. 3_1_19] gi|149935476|gb|ABR42173.1| putative ferredoxin-type protein [Parabacteroides distasonis ATCC 8503] gi|298265492|gb|EFI07153.1| ferredoxin-type protein [Bacteroides sp. 3_1_19] Length = 494 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%) Query: 64 IACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C CE CP +AI + + + + + ID CI CG C+ CP Sbjct: 428 VNCGNCERHCPTKAIQMVA--KDPNDPKSLKVPVIDTELCIGCGACEYYCP 476 Score = 39.3 bits (90), Expect = 0.16, Method: Composition-based stats. Identities = 19/91 (20%), Positives = 31/91 (34%), Gaps = 3/91 (3%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 N C AC+LC ++C Q + + + + +C C E CP Sbjct: 340 RNFTGHCTACQLCVSVCSNQVLRPSTDLKKFMQPEMSYERGYCRPECTK---CSEVCPTG 396 Query: 117 AIVEGPNFEFATETRQELYYDKERLLNNGDR 147 AI + + + KE + N D Sbjct: 397 AIQLITKADKSATQIGHAVWIKENCVVNTDE 427 Score = 35.8 bits (81), Expect = 2.2, Method: Composition-based stats. Identities = 29/132 (21%), Positives = 41/132 (31%), Gaps = 19/132 (14%) Query: 3 IFRCNVSFL--FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGE 60 ++ +V+ L FV F L R TI T F + R Sbjct: 166 MWIKSVATFGVALVTFVVLFLLAWRNGRTYCNTIC----PVGTVLGFVARFSFLRPVIDV 221 Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E+C C LC C A I + ID +C+ C C + C A+ Sbjct: 222 EKCNGCGLCARNCKAACIDS-------------KNHSIDYSRCVTCLDCIDKCKRGALTY 268 Query: 121 GPNFEFATETRQ 132 P R+ Sbjct: 269 VPRKRKTESERE 280 Score = 34.7 bits (78), Expect = 4.2, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 8/61 (13%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI------YCGLCQEACPVDAIV 119 C C +CP AI + + + C+ CG C+ CP AI Sbjct: 386 CTKCSEVCPTGAIQLITKADKSATQIGHAVW--IKENCVVNTDEVNCGNCERHCPTKAIQ 443 Query: 120 E 120 Sbjct: 444 M 444 >gi|153840324|ref|ZP_01992991.1| electron transport complex protein RnfC [Vibrio parahaemolyticus AQ3810] gi|149746011|gb|EDM57141.1| electron transport complex protein RnfC [Vibrio parahaemolyticus AQ3810] Length = 452 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 1/53 (1%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 CI C C CPA + + ++++ CI CG C CP Sbjct: 36 ECIRCGQCAEACPAS-LLPQQLQWHAKAEEYDKLEELNLKDCIECGACAFVCP 87 Score = 33.5 bits (75), Expect = 9.5, Method: Composition-based stats. Identities = 12/43 (27%), Positives = 19/43 (44%) Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + +Q ++ TR + ++CI CG C EACP Sbjct: 6 LPHSQVPITKTANCILAPTRHEISAHQYEMECIRCGQCAEACP 48 >gi|148379790|ref|YP_001254331.1| hydrogenase [Clostridium botulinum A str. ATCC 3502] gi|153933959|ref|YP_001384087.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum A str. ATCC 19397] gi|153936361|ref|YP_001387627.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum A str. Hall] gi|148289274|emb|CAL83370.1| putative hydrogenase [Clostridium botulinum A str. ATCC 3502] gi|152930003|gb|ABS35503.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum A str. ATCC 19397] gi|152932275|gb|ABS37774.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum A str. Hall] gi|322806068|emb|CBZ03635.1| periplasmic [Fe] hydrogenase [Clostridium botulinum H04402 065] Length = 574 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 11/77 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + C C C CP +AI ++ +I +CI CG C Sbjct: 1 MNYIDISGLNCKNCYKCLRACPVKAIKFKNEKA-----------EIVEERCISCGRCLVI 49 Query: 113 CPVDAIVEGPNFEFATE 129 CP +A + P+ ++ + Sbjct: 50 CPQNAKKDKPDIKYVKD 66 >gi|126651249|ref|ZP_01723459.1| dihydropyrimidine dehydrogenase [Bacillus sp. B14905] gi|126592087|gb|EAZ86153.1| dihydropyrimidine dehydrogenase [Bacillus sp. B14905] Length = 427 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 16/63 (25%), Positives = 19/63 (30%), Gaps = 5/63 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD-A 117 + CI C C C +G C+ C LC CPVD A Sbjct: 345 NNDVCINCNKCHIACE-DTSHQCIDLYTENGRPLLKV---REEDCVGCNLCSIVCPVDGA 400 Query: 118 IVE 120 I Sbjct: 401 ISM 403 >gi|119489770|ref|ZP_01622528.1| ferredoxin [Lyngbya sp. PCC 8106] gi|119454344|gb|EAW35494.1| ferredoxin [Lyngbya sp. PCC 8106] Length = 134 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 9/78 (11%) Query: 41 GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100 S + R EE C+ C LC +CP +A+T++S TR Sbjct: 62 WMQSKNIKVSLERREILIDEEICVDCGLCTGVCPTEALTLDSDTFYLTFTR--------- 112 Query: 101 IKCIYCGLCQEACPVDAI 118 +CI C C ACPV AI Sbjct: 113 SRCIVCEQCISACPVQAI 130 Score = 37.8 bits (86), Expect = 0.53, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 18/38 (47%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 ID C+ CGLC CP +A+ + + T TR Sbjct: 79 IDEEICVDCGLCTGVCPTEALTLDSDTFYLTFTRSRCI 116 >gi|121701937|ref|XP_001269233.1| RNase L inhibitor of the ABC superfamily, putative [Aspergillus clavatus NRRL 1] gi|119397376|gb|EAW07807.1| RNase L inhibitor of the ABC superfamily, putative [Aspergillus clavatus NRRL 1] Length = 633 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 3/68 (4%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP---N 123 K C C + +G C + T + I CI CG+C + CP AI N Sbjct: 15 KKCRQECKKSCPVVRTGKLCIEVTPESKIAFISERLCIGCGICPKKCPFGAIHIINLPTN 74 Query: 124 FEFATETR 131 E R Sbjct: 75 LETQVTHR 82 >gi|189425610|ref|YP_001952787.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter lovleyi SZ] gi|189421869|gb|ACD96267.1| NADH ubiquinone oxidoreductase 20 kDa subunit [Geobacter lovleyi SZ] Length = 252 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 27/104 (25%), Positives = 38/104 (36%), Gaps = 19/104 (18%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKL-CEAICPAQAITIESGPRCHDGTR 91 T+ YP RFRG AL+R C C A CP A++ Sbjct: 16 TMAYPDGPVVLPERFRGYPALQRD----LLCDLDGTACVAACPFGALSCSENGLV----- 66 Query: 92 RTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 +DM KC++C C + + G + A R+EL Sbjct: 67 ------LDMGKCLFCADCPAS---SCVGFGNDHRLAVSRREELL 101 >gi|11127701|gb|AAG31037.1|AF262401_1 putative 64kDa iron hydrogenase [Trichomonas vaginalis] Length = 589 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 19/65 (29%), Positives = 23/65 (35%), Gaps = 3/65 (4%) Query: 59 GEERCIACKLCEAICPAQAIT---IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 +C+ C C C A T I + T + CI CG C CPV Sbjct: 153 DTSKCVLCGRCIRACEEVAGTSAIIFGNRAKKMRIQPTFGVTLQETSCIKCGQCTLYCPV 212 Query: 116 DAIVE 120 AI E Sbjct: 213 GAITE 217 >gi|71906801|ref|YP_284388.1| electron transport complex protein RnfB [Dechloromonas aromatica RCB] gi|71846422|gb|AAZ45918.1| Electron transport complex, RnfABCDGE type, B subunit [Dechloromonas aromatica RCB] Length = 180 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 24/67 (35%), Gaps = 10/67 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E CI C LC CP AI + + I +C C LC CPV+ I Sbjct: 106 DENTCIGCTLCIQACPVDAIVGAAKQ----------LHIIIAQQCTGCELCLPPCPVECI 155 Query: 119 VEGPNFE 125 E Sbjct: 156 AMATIPE 162 Score = 36.2 bits (82), Expect = 1.7, Method: Composition-based stats. Identities = 14/28 (50%), Positives = 16/28 (57%) Query: 91 RRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + ID CI C LC +ACPVDAI Sbjct: 98 KPKQVAVIDENTCIGCTLCIQACPVDAI 125 >gi|116749577|ref|YP_846264.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Syntrophobacter fumaroxidans MPOB] gi|116698641|gb|ABK17829.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Syntrophobacter fumaroxidans MPOB] Length = 261 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 21/69 (30%), Positives = 26/69 (37%), Gaps = 9/69 (13%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIES---------GPRCHDGTRRTVRYDIDMIKCIY 105 + RCI C C +CP T S D + VR +CI Sbjct: 148 WWLTHMNRCIHCHGCRDVCPVCFCTECSLEHRELVSGAKLPPDSSFHLVRAVHMGGRCID 207 Query: 106 CGLCQEACP 114 CGLC+E CP Sbjct: 208 CGLCEEICP 216 >gi|303244434|ref|ZP_07330769.1| nitrite and sulphite reductase 4Fe-4S region [Methanothermococcus okinawensis IH1] gi|302485132|gb|EFL48061.1| nitrite and sulphite reductase 4Fe-4S region [Methanothermococcus okinawensis IH1] Length = 626 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 18/79 (22%), Positives = 26/79 (32%), Gaps = 11/79 (13%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + G ++ EE C C C +C +AI + + Sbjct: 469 CPNKCVRPQIHDIGIVGVKYPIVNEENCNGCGRCADVCKVEAIHM-----------KGKT 517 Query: 96 YDIDMIKCIYCGLCQEACP 114 + CI CG C ACP Sbjct: 518 SYTNYNACIGCGKCIAACP 536 Score = 37.0 bits (84), Expect = 0.88, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 21/57 (36%), Gaps = 1/57 (1%) Query: 75 AQAITIESGPRCHDGTRRTVRYDI-DMIKCIYCGLCQEACPVDAIVEGPNFEFATET 130 + P+ HD V+Y I + C CG C + C V+AI + Sbjct: 467 SGCPNKCVRPQIHDIGIVGVKYPIVNEENCNGCGRCADVCKVEAIHMKGKTSYTNYN 523 >gi|326315758|ref|YP_004233430.1| dihydroorotate dehydrogenase family protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323372594|gb|ADX44863.1| dihydroorotate dehydrogenase family protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 449 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 17/61 (27%), Positives = 25/61 (40%), Gaps = 10/61 (16%) Query: 59 GEERCIACKLCEAICP---AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 ++ CI C C +C QAIT +++D +C+ C LC CPV Sbjct: 342 NQDACIQCGRCHVVCEDTSHQAITFTQEGGA-------RSFEVDESECVGCNLCVSICPV 394 Query: 116 D 116 Sbjct: 395 P 395 >gi|223984602|ref|ZP_03634729.1| hypothetical protein HOLDEFILI_02025 [Holdemania filiformis DSM 12042] gi|223963449|gb|EEF67834.1| hypothetical protein HOLDEFILI_02025 [Holdemania filiformis DSM 12042] Length = 560 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 23/93 (24%), Positives = 33/93 (35%), Gaps = 5/93 (5%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICP-AQAITIESGPRCHDGTRR 92 +E T P F + +C+ C C C Q + I S T+ Sbjct: 121 RKVRYEGEKTPPTF--DEVAPGIVRDTSKCVLCGRCIETCKKVQGLGILSFINRGFNTKV 178 Query: 93 TVRYDIDMIK--CIYCGLCQEACPVDAIVEGPN 123 +D C+ CG C ACPV A+ E + Sbjct: 179 APVFDKSFNDVNCMQCGQCVNACPVGALFEKED 211 >gi|223985163|ref|ZP_03635255.1| hypothetical protein HOLDEFILI_02561 [Holdemania filiformis DSM 12042] gi|223962872|gb|EEF67292.1| hypothetical protein HOLDEFILI_02561 [Holdemania filiformis DSM 12042] Length = 278 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 17/65 (26%), Positives = 23/65 (35%), Gaps = 11/65 (16%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 P C C C A CPA A+T+ +G + +C+ C C CP Sbjct: 36 HNPETWRICDHCGQCVAGCPAGALTLHAGKVVWE-----------ESRCVGCDQCIHVCP 84 Query: 115 VDAIV 119 A Sbjct: 85 HHASC 89 >gi|167389621|ref|XP_001739023.1| hypothetical protein [Entamoeba dispar SAW760] gi|165897462|gb|EDR24612.1| hypothetical protein, conserved [Entamoeba dispar SAW760] Length = 409 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 23/82 (28%), Positives = 29/82 (35%), Gaps = 4/82 (4%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L R +RC C C +G C + + R I CI C LC + Sbjct: 11 LDRIAVINDRCKP-GKCRLECKKTCPINRAGGLCIEVLPKDKRAVISETLCIGCALCVKK 69 Query: 113 CPVDAIVEGP---NFEFATETR 131 CP +AI N E T R Sbjct: 70 CPFEAIKIINLPKNLEQCTTHR 91 >gi|222053326|ref|YP_002535688.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp. FRC-32] gi|221562615|gb|ACM18587.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp. FRC-32] Length = 1019 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 7/62 (11%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C++C C C AI+ P+ + ++ I C GLC CP AI Sbjct: 943 SDCVSCGACITACKYGAISFHDTPQG-------KKARVEPILCKGDGLCNAKCPTGAIYL 995 Query: 121 GP 122 Sbjct: 996 KH 997 Score = 35.1 bits (79), Expect = 2.9, Method: Composition-based stats. Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 12/92 (13%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPA-------QAITIESGPRCHDGTRRTVRYDI 98 F+ + EE+C C +C CP Q ++ + + + Sbjct: 94 DFKVTLTKKPRYISEEKCTGCNICVDYCPVKISDPFNQHLSENKAVHIYFSQAVPLVTYV 153 Query: 99 DMIKCIY-----CGLCQEACPVDAIVEGPNFE 125 D C+Y C +C AC +AI E Sbjct: 154 DPETCLYLKEGKCQICVGACKTNAIDLHQKPE 185 >gi|83594655|ref|YP_428407.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodospirillum rubrum ATCC 11170] gi|83577569|gb|ABC24120.1| 4Fe-4S ferredoxin, iron-sulfur binding [Rhodospirillum rubrum ATCC 11170] Length = 506 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 16/66 (24%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 RG+++ + C+ C LC +CP E + CI CG Sbjct: 277 RGKYSRDADFSQRGDCVDCGLCVQVCPTGVDIREG----------------TQLGCIGCG 320 Query: 108 LCQEAC 113 LC +AC Sbjct: 321 LCVDAC 326 Score = 35.5 bits (80), Expect = 2.6, Method: Composition-based stats. Identities = 7/15 (46%), Positives = 9/15 (60%) Query: 101 IKCIYCGLCQEACPV 115 C+ CGLC + CP Sbjct: 290 GDCVDCGLCVQVCPT 304 >gi|325204424|gb|ADY99877.1| iron-sulfur cluster binding protein [Neisseria meningitidis M01-240355] Length = 484 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 18/65 (27%), Gaps = 10/65 (15%) Query: 62 RCIACKLCEAICPA-----QAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQE 111 +CI C C CP A + P C CG C E Sbjct: 317 QCIRCGACMNHCPVYTRIGGAAYGTTYPGPIGEIISPHLLGLDATRDLPTACTMCGACVE 376 Query: 112 ACPVD 116 CPV Sbjct: 377 VCPVR 381 >gi|325299224|ref|YP_004259141.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Bacteroides salanitronis DSM 18170] gi|324318777|gb|ADY36668.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Bacteroides salanitronis DSM 18170] Length = 260 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 10/66 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E C C C +CP AI + + D+ +CI C C +ACP A Sbjct: 187 CTENCFGCGECVEVCPTHAIRLNAENVIET----------DINRCIRCCACVKACPNGAR 236 Query: 119 VEGPNF 124 V F Sbjct: 237 VYDNPF 242 Score = 40.5 bits (93), Expect = 0.090, Method: Composition-based stats. Identities = 9/23 (39%), Positives = 10/23 (43%) Query: 98 IDMIKCIYCGLCQEACPVDAIVE 120 + C CG C E CP AI Sbjct: 186 VCTENCFGCGECVEVCPTHAIRL 208 >gi|325283907|ref|YP_004256448.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Deinococcus proteolyticus MRP] gi|324315716|gb|ADY26831.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Deinococcus proteolyticus MRP] Length = 335 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 16/98 (16%) Query: 37 PFEKGSTSPRFR----------GEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC 86 P E+ R+R G P +E+C+ C +C +CP +AIT Sbjct: 227 PAERTPQEWRWRKASLNPAPPAGTPVYWPAPLVDEKCMDCPVCSNVCPTEAITRTHDAAG 286 Query: 87 HDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 T+ +D+ C C C ++CP A+ ++ Sbjct: 287 ------TLHLTLDLSACTGCMACVDSCPPQAMHRQNHW 318 Score = 42.0 bits (97), Expect = 0.030, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 13/63 (20%) Query: 66 CKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 C LC CP +A+ + ID +C CGLC +ACP A+ ++ Sbjct: 33 CDLCARACPHEAVILGPLGASV---------QIDPDRCTGCGLCVQACPSGAL----EYD 79 Query: 126 FAT 128 Sbjct: 80 LTG 82 >gi|317471719|ref|ZP_07931060.1| glycyl-radical enzyme activating protein family [Anaerostipes sp. 3_2_56FAA] gi|316900823|gb|EFV22796.1| glycyl-radical enzyme activating protein family [Anaerostipes sp. 3_2_56FAA] Length = 304 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 11/61 (18%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 +++CI C C +CP++AI++ + KCI C C CP A Sbjct: 56 WDQKKCIGCHHCIDVCPSKAISLIQD-----------HIRVHAEKCIGCRQCVLECPGKA 104 Query: 118 I 118 + Sbjct: 105 L 105 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 9/23 (39%), Positives = 11/23 (47%) Query: 102 KCIYCGLCQEACPVDAIVEGPNF 124 KCI C C + CP AI + Sbjct: 60 KCIGCHHCIDVCPSKAISLIQDH 82 >gi|313672000|ref|YP_004050111.1| 4fe-4S ferredoxin [Calditerrivibrio nitroreducens DSM 19672] gi|312938756|gb|ADR17948.1| 4Fe-4S ferredoxin [Calditerrivibrio nitroreducens DSM 19672] Length = 355 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 21/65 (32%), Gaps = 13/65 (20%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +++C AC C + C AI I+ C C C CP AI Sbjct: 191 HQDKCTACGRCLSACAHDAIVIKPKA-------------FINENCTGCARCIAVCPEGAI 237 Query: 119 VEGPN 123 + Sbjct: 238 GINWD 242 >gi|302872730|ref|YP_003841366.1| Glutamate synthase (NADPH) [Caldicellulosiruptor obsidiansis OB47] gi|302575589|gb|ADL43380.1| Glutamate synthase (NADPH) [Caldicellulosiruptor obsidiansis OB47] Length = 502 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 22/64 (34%), Gaps = 9/64 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E RCI CK+C C + + R D KC+ C C CP A+ Sbjct: 14 DETRCIRCKVCVRQCANEVHEYDDEED---------RVVADSSKCVACHRCVVMCPTKAL 64 Query: 119 VEGP 122 Sbjct: 65 TIKK 68 >gi|288962886|ref|YP_003453180.1| 4Fe-4S ferredoxin, iron-sulfur binding [Azospirillum sp. B510] gi|288915152|dbj|BAI76636.1| 4Fe-4S ferredoxin, iron-sulfur binding [Azospirillum sp. B510] Length = 505 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 27/134 (20%), Positives = 36/134 (26%), Gaps = 21/134 (15%) Query: 1 MRIFRCNV---SFLFLKEFVGAFFLCLRYFFKAKT------TINYPFEKGSTSPRFRGEH 51 MR F + V F L YF A T +E S F G Sbjct: 167 MRKFLRKAGKHAGWLALSLVTGFGF-LAYFSDAPALLRDLLTFQASYEAVSFFAIFAGMT 225 Query: 52 ALRRYPNGEERCI-ACKL----------CEAICPAQAITIESGPRCHDGTRRTVRYDIDM 100 + E+ C+ C + QA ++ R Sbjct: 226 YVMAGWTREQMCMYMCPWPRIQSAMLDEHSLVVTYQADRGDNRGPKRKSQSWDERRAQGF 285 Query: 101 IKCIYCGLCQEACP 114 CI CG C + CP Sbjct: 286 GDCIDCGQCVQVCP 299 Score = 41.6 bits (96), Expect = 0.036, Method: Composition-based stats. Identities = 17/63 (26%), Positives = 20/63 (31%), Gaps = 16/63 (25%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 G CI C C +CP CI CGLC +AC I Sbjct: 284 GFGDCIDCGQCVQVCPIGIDVRTGE----------------QADCINCGLCVDACDGIMI 327 Query: 119 VEG 121 +G Sbjct: 328 QQG 330 >gi|256810130|ref|YP_003127499.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus fervens AG86] gi|256793330|gb|ACV23999.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Methanocaldococcus fervens AG86] Length = 82 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 7/68 (10%) Query: 60 EERCIACKLCEAICPAQAITIE-SGPRCHDGTRRTVRYD------IDMIKCIYCGLCQEA 112 ERC C C CP A E G + +R + ++ C CG C EA Sbjct: 10 PERCHGCGNCVVSCPVNAKNPETWGGKGPYSDEVVIRVENGVVTVVNQDLCGGCGACIEA 69 Query: 113 CPVDAIVE 120 CPV+AI Sbjct: 70 CPVNAIEL 77 >gi|226949071|ref|YP_002804162.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum A2 str. Kyoto] gi|226841860|gb|ACO84526.1| sensory box-containing [Fe] hydrogenase [Clostridium botulinum A2 str. Kyoto] Length = 574 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 29/77 (37%), Gaps = 11/77 (14%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + C C C CP +AI ++ +I +CI CG C Sbjct: 1 MNYIDISGLNCKNCYKCLRACPVKAIKFKNEKA-----------EIVEERCISCGRCLVI 49 Query: 113 CPVDAIVEGPNFEFATE 129 CP +A + P+ ++ + Sbjct: 50 CPQNAKKDKPDIKYVKD 66 >gi|170693701|ref|ZP_02884859.1| formate dehydrogenase, alpha subunit [Burkholderia graminis C4D1M] gi|170141483|gb|EDT09653.1| formate dehydrogenase, alpha subunit [Burkholderia graminis C4D1M] Length = 992 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 15/69 (21%), Positives = 22/69 (31%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T +G + +C+ CG C Sbjct: 198 YFTYDPAKCIVCNRCVRACEETQGTFALTIAGRGFESRVAASENRPFMDSECVSCGACVA 257 Query: 112 ACPVDAIVE 120 ACP + E Sbjct: 258 ACPTATLQE 266 >gi|167746910|ref|ZP_02419037.1| hypothetical protein ANACAC_01622 [Anaerostipes caccae DSM 14662] gi|167653870|gb|EDR97999.1| hypothetical protein ANACAC_01622 [Anaerostipes caccae DSM 14662] Length = 304 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 11/61 (18%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 +++CI C C +CP++AI++ + KCI C C CP A Sbjct: 56 WDQKKCIGCHHCIDVCPSKAISLIQD-----------HIRVHAEKCIGCRQCVLECPGKA 104 Query: 118 I 118 + Sbjct: 105 L 105 Score = 36.6 bits (83), Expect = 1.2, Method: Composition-based stats. Identities = 9/23 (39%), Positives = 11/23 (47%) Query: 102 KCIYCGLCQEACPVDAIVEGPNF 124 KCI C C + CP AI + Sbjct: 60 KCIGCHHCIDVCPSKAISLIQDH 82 >gi|161870306|ref|YP_001599476.1| iron-sulphur protein [Neisseria meningitidis 053442] gi|161595859|gb|ABX73519.1| iron-sulphur protein [Neisseria meningitidis 053442] Length = 484 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 18/65 (27%), Gaps = 10/65 (15%) Query: 62 RCIACKLCEAICPA-----QAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQE 111 +CI C C CP A + P C CG C E Sbjct: 317 QCIRCGACMNHCPVYTRIGGAAYGTTYPGPIGEIISPHLLGLDATRDLPTACTMCGACVE 376 Query: 112 ACPVD 116 CPV Sbjct: 377 VCPVR 381 >gi|158520200|ref|YP_001528070.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfococcus oleovorans Hxd3] gi|158509026|gb|ABW65993.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfococcus oleovorans Hxd3] Length = 386 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 21/91 (23%), Positives = 32/91 (35%), Gaps = 12/91 (13%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E C C C CP A+ + ++ +C+ CG+C AC +AI Sbjct: 305 EECNLCMACVDKCPVNALYHHKPHKDDGSDNFIA---LNESECLGCGVCVMACDNEAIQL 361 Query: 121 GPNFEFATETRQELYYDKERLLNNGDRWESE 151 + E +L+ GDR E Sbjct: 362 VKVRDTVPEI---------DVLHMGDRHNKE 383 >gi|150402467|ref|YP_001329761.1| coenzyme F420 hydrogenase/dehydrogenase subunit beta [Methanococcus maripaludis C7] gi|150033497|gb|ABR65610.1| coenzyme F420 hydrogenase/dehydrogenase beta subunit domain protein [Methanococcus maripaludis C7] Length = 387 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 22/104 (21%), Positives = 32/104 (30%), Gaps = 4/104 (3%) Query: 35 NYPFEKGS-TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93 + EK R + + + C C C+ + Sbjct: 267 KWLEEKYPSIEEWNRQWNKCIKCYGCRDVCPVC-FCKECALTADYIDTGSIPPDPIMFQG 325 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFEFATE-TRQELYY 136 VR C+ CG C++ CP I F E TR+EL Y Sbjct: 326 VRMSHMAFSCVNCGQCEDVCP-MEIPVARIFHKIQEKTRKELGY 368 >gi|157737100|ref|YP_001489783.1| 2-oxoglutarate-acceptor oxidoreductase subunit OorD [Arcobacter butzleri RM4018] gi|114461614|gb|ABI75080.1| OorD subunit of 2-oxoglutarate:acceptor oxidoreductase [Arcobacter butzleri] gi|157698954|gb|ABV67114.1| OorD subunit of 2-oxoglutarate:acceptor oxidoreductase [Arcobacter butzleri RM4018] Length = 107 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 26/90 (28%), Positives = 41/90 (45%), Gaps = 6/90 (6%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E RC AC C ++CPA + + G+ TV CI C C+ ACP Sbjct: 13 WVDENRCKACDKCVSVCPAGVLAMRQEVHSTLGSMITVV---HPESCIGCSDCELACPDF 69 Query: 117 AIV--EGPNFEFATETRQELYYDKERLLNN 144 AI + F+FA + ++ +E+++ N Sbjct: 70 AIFVADRKEFKFAKLS-EDAKIRREKIIEN 98 >gi|91203919|emb|CAJ71572.1| similar to proton-translocating NADH dehydrogenase I, 51 kDa subunit (NuoF) [Candidatus Kuenenia stuttgartiensis] Length = 616 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 28/96 (29%), Positives = 39/96 (40%), Gaps = 15/96 (15%) Query: 23 CLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIES 82 LRY FK + + + T+ AL RY ++C C++C CP +AI+ Sbjct: 535 TLRY-FKDEYIAHIRDKICPTATCT----ALHRYEVIPDKCTKCQVCIRNCPVKAISGSK 589 Query: 83 GPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ID KCI C +C E C AI Sbjct: 590 TEVAF----------IDKAKCIKCNVCYEKCNFLAI 615 >gi|85859306|ref|YP_461508.1| ferridoxin [Syntrophus aciditrophicus SB] gi|85722397|gb|ABC77340.1| ferridoxin [Syntrophus aciditrophicus SB] Length = 346 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 16/75 (21%), Positives = 23/75 (30%), Gaps = 4/75 (5%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI----DMIKCIYCGL 108 + +G K AI S ++ + D+ KC CG Sbjct: 145 IFDQTDGFVIFSHFKGHMEAGFGGAIKNLSMGFASRAQKQRMHADVRPLLMPEKCTKCGT 204 Query: 109 CQEACPVDAIVEGPN 123 C E CP A G + Sbjct: 205 CVEVCPTGAAQFGDD 219 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 15/71 (21%), Positives = 19/71 (26%), Gaps = 10/71 (14%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 E+C C C +CP A CI C C CP A+ Sbjct: 196 PEKCTKCGTCVEVCPTGAAQFGDDGLPFYDHEV----------CIGCAQCIGFCPALALK 245 Query: 120 EGPNFEFATET 130 + A Sbjct: 246 IHWETDAAVFQ 256 >gi|71907393|ref|YP_284980.1| 4Fe-4S ferredoxin, iron-sulfur binding:FAD linked oxidase, C-terminal:FAD linked oxidase, N-terminal [Dechloromonas aromatica RCB] gi|71847014|gb|AAZ46510.1| 4Fe-4S ferredoxin, iron-sulfur binding:FAD linked oxidase, C-terminal:FAD linked oxidase, N-terminal [Dechloromonas aromatica RCB] Length = 923 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 14/73 (19%) Query: 57 PNGEERCIACKLCEAICPAQ--------------AITIESGPRCHDGTRRTVRYDIDMIK 102 + +RCI C CE +CP+ ++ + G+ + + Sbjct: 531 EDIVDRCIECGFCEPLCPSHRLTLSPRQRITSVRELSRRAAAGEPAGSVGEDYAYMGLDT 590 Query: 103 CIYCGLCQEACPV 115 C CGLC ACPV Sbjct: 591 CAGCGLCSTACPV 603 Score = 34.3 bits (77), Expect = 6.4, Method: Composition-based stats. Identities = 8/22 (36%), Positives = 11/22 (50%) Query: 101 IKCIYCGLCQEACPVDAIVEGP 122 +CI CG C+ CP + P Sbjct: 535 DRCIECGFCEPLCPSHRLTLSP 556 >gi|16125654|ref|NP_420218.1| ferredoxin [Caulobacter crescentus CB15] gi|221234408|ref|YP_002516844.1| polyferredoxin protein fixG [Caulobacter crescentus NA1000] gi|13422764|gb|AAK23386.1| ferredoxin, putative [Caulobacter crescentus CB15] gi|220963580|gb|ACL94936.1| polyferredoxin protein fixG [Caulobacter crescentus NA1000] Length = 496 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 25/66 (37%), Gaps = 16/66 (24%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 RG H + G CI C+ C +CP D ++CI CG Sbjct: 268 RGAHKKGQSWEGRGDCIDCRQCVVVCPMG----------------IDIRDGSQLECINCG 311 Query: 108 LCQEAC 113 LC +AC Sbjct: 312 LCVDAC 317 >gi|73749289|ref|YP_308528.1| putative reductive dehalogenase [Dehalococcoides sp. CBDB1] gi|289433250|ref|YP_003463123.1| reductive dehalogenase [Dehalococcoides sp. GT] gi|73661005|emb|CAI83612.1| putative reductive dehalogenase [Dehalococcoides sp. CBDB1] gi|77176884|gb|ABA64547.1| reductive dehalogenase protein [Dehalococcoides sp. KB1] gi|288946970|gb|ADC74667.1| reductive dehalogenase [Dehalococcoides sp. GT] Length = 495 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 3/74 (4%) Query: 56 YPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + C C +C CP AI G + + D KC +C +CQ Sbjct: 375 DFGARKFCETCGICAEACPFGAINPGEPTWKDDNAFGNAGFLGWRCDYTKCPHCPICQGT 434 Query: 113 CPVDAIVEGPNFEF 126 CP ++ + Sbjct: 435 CPFNSHPGSFIHDI 448 >gi|148264001|ref|YP_001230707.1| hydrogenase 2 protein HybA [Geobacter uraniireducens Rf4] gi|146397501|gb|ABQ26134.1| 4Fe-4S ferredoxin, iron-sulfur binding domain protein [Geobacter uraniireducens Rf4] Length = 311 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 22/94 (23%), Positives = 36/94 (38%), Gaps = 12/94 (12%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDM-IKCIYCGLCQEACPV 115 + CI C+ C+ C + + + + ++ K I C E CPV Sbjct: 140 DYNKNTCIGCRYCQVACAFNIPKFQWEKSIPQIVKCDLCKNTNLREKGIS--ACAEVCPV 197 Query: 116 DAIVEGPNFEFATETRQELYYD-KERLLNNGDRW 148 AI G R++L + K RL N D++ Sbjct: 198 GAIKFG--------KRKDLLQEAKTRLRENPDKY 223 >gi|115350949|ref|YP_772788.1| formate dehydrogenase subunit alpha [Burkholderia ambifaria AMMD] gi|115280937|gb|ABI86454.1| formate dehydrogenase alpha subunit [Burkholderia ambifaria AMMD] Length = 983 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 14/69 (20%), Positives = 20/69 (28%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T + +C+ CG C Sbjct: 187 YFTYDPSKCIVCNRCVRACEETQGTFALTIAARGFESRVAAGESESFMDSECVSCGACVA 246 Query: 112 ACPVDAIVE 120 ACP + E Sbjct: 247 ACPTATLQE 255 >gi|315651987|ref|ZP_07904989.1| ferredoxin [Eubacterium saburreum DSM 3986] gi|315485816|gb|EFU76196.1| ferredoxin [Eubacterium saburreum DSM 3986] Length = 55 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 11/64 (17%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 ++C++C CE CP AI+ +Y+ID CI CG C CP Sbjct: 1 MAYTITDKCVSCGTCEGECPVSAISQGD-----------TQYNIDADACIDCGTCASVCP 49 Query: 115 VDAI 118 +AI Sbjct: 50 TEAI 53 >gi|307718326|ref|YP_003873858.1| hypothetical protein STHERM_c06260 [Spirochaeta thermophila DSM 6192] gi|306532051|gb|ADN01585.1| hypothetical protein STHERM_c06260 [Spirochaeta thermophila DSM 6192] Length = 596 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 21/86 (24%), Positives = 29/86 (33%), Gaps = 9/86 (10%) Query: 59 GEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 +CI C C +C AI + + + C+ CG C CP Sbjct: 146 DMNKCIGCGRCIEVCHHVQSVGAIFFHNRGSHTIVANAAGQ-TMGTSVCVACGQCVVYCP 204 Query: 115 VDAIVEGPNFEFATETRQELYYDKER 140 V A+ E A E E D E+ Sbjct: 205 VGALYEKE----AVERVWEALADPEK 226 Score = 38.5 bits (88), Expect = 0.32, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 5/67 (7%) Query: 52 ALRRYPNGEERCIACKLCE-----AICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC 106 L +P+ +CI CE ++I + R R + DM KCI C Sbjct: 94 ILATHPDDCLKCIKHGKCELQDLAERLEVRSIPYDKYERGLPVDRTSPSIVRDMNKCIGC 153 Query: 107 GLCQEAC 113 G C E C Sbjct: 154 GRCIEVC 160 >gi|302391321|ref|YP_003827141.1| electron transport complex, RnfABCDGE type, C subunit [Acetohalobium arabaticum DSM 5501] gi|302203398|gb|ADL12076.1| electron transport complex, RnfABCDGE type, C subunit [Acetohalobium arabaticum DSM 5501] Length = 442 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 7/82 (8%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 CI C C +CPA + + + D +++ CI CG C CP + Sbjct: 361 EYESSNCIRCARCVDVCPAF-LMPVTLSKVAQVDMVEKLDDYNVMDCIECGSCSYVCPAN 419 Query: 117 A-----IVEGPNFEFATETRQE 133 I G + + A E R+ Sbjct: 420 IPLLHWIRLGKD-KLAAEQRKN 440 >gi|298675341|ref|YP_003727091.1| methyl-viologen-reducing hydrogenase delta subunit [Methanohalobium evestigatum Z-7303] gi|298288329|gb|ADI74295.1| methyl-viologen-reducing hydrogenase delta subunit [Methanohalobium evestigatum Z-7303] Length = 789 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 11/65 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++C C +C+ +C + ++D + C CG C ACP DAI Sbjct: 576 DTDKCTGCGICQDVCKFG-----------KIKLYNHKAEVDELSCHGCGSCSAACPEDAI 624 Query: 119 VEGPN 123 Sbjct: 625 YMRNQ 629 Score = 39.3 bits (90), Expect = 0.17, Method: Composition-based stats. Identities = 19/76 (25%), Positives = 27/76 (35%), Gaps = 12/76 (15%) Query: 66 CKLCEAICPAQAITIESGP-----------RCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 CK C C + S P I+ C+ CGLC++ CP Sbjct: 244 CKGCIEECSSVCPVEISNPFDYGIGKIKAISMPFPQAVPQCAYINDEYCVGCGLCRQVCP 303 Query: 115 VDAI-VEGPNFEFATE 129 DA+ E EF+ + Sbjct: 304 ADAVDYEQKEEEFSFD 319 >gi|282900214|ref|ZP_06308168.1| 4Fe-4S ferredoxin, iron-sulfur binding [Cylindrospermopsis raciborskii CS-505] gi|281194889|gb|EFA69832.1| 4Fe-4S ferredoxin, iron-sulfur binding [Cylindrospermopsis raciborskii CS-505] Length = 373 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 26/74 (35%), Gaps = 8/74 (10%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 P FR R K CE ICPAQAI S ++ I KC Sbjct: 96 PHFRKAKFNPRDCPDNCS----KPCEKICPAQAIVFNSQIN----NQKDSSSGIIAEKCY 147 Query: 105 YCGLCQEACPVDAI 118 CG C CP I Sbjct: 148 GCGRCVPICPYGII 161 >gi|255527514|ref|ZP_05394382.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7] gi|255508784|gb|EET85156.1| NADH dehydrogenase (quinone) [Clostridium carboxidivorans P7] Length = 601 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 10/68 (14%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 L + E++C C +C+ C AIT + + ID KC+ CG C Sbjct: 541 KKLTTFVIDEDKCKGCDICKKNCAVDAITGDVKKP----------HVIDDEKCVRCGNCM 590 Query: 111 EACPVDAI 118 C DA+ Sbjct: 591 NMCKFDAV 598 >gi|304316579|ref|YP_003851724.1| hydrogenase, Fe-only [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302778081|gb|ADL68640.1| hydrogenase, Fe-only [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 581 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 5/68 (7%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI----DMIKCIYCGLCQEACP 114 +C+ C+ C A C + + + G + V + CI CG C EACP Sbjct: 144 DPNKCVLCRRCVATCN-NVQNVFAIGMVNRGFKTIVAPSFGRSLNDSPCISCGQCIEACP 202 Query: 115 VDAIVEGP 122 V AI E Sbjct: 203 VGAIYEKD 210 >gi|261402754|ref|YP_003246978.1| ABC transporter releated protein [Methanocaldococcus vulcanius M7] gi|261369747|gb|ACX72496.1| ABC transporter releated protein [Methanocaldococcus vulcanius M7] Length = 588 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 17/66 (25%), Positives = 26/66 (39%), Gaps = 1/66 (1%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 +R +RC K C C + G + + T + I + C CG+C + Sbjct: 1 MRLAIIDYDRCQP-KKCSMECMKYCPGVRMGEKTIEIDENTGKPVISEVLCSGCGICVKR 59 Query: 113 CPVDAI 118 CP AI Sbjct: 60 CPFKAI 65 >gi|237508970|ref|ZP_04521685.1| iron-sulfur cluster-binding protein [Burkholderia pseudomallei MSHR346] gi|235001175|gb|EEP50599.1| iron-sulfur cluster-binding protein [Burkholderia pseudomallei MSHR346] Length = 477 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 26/105 (24%), Gaps = 10/105 (9%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-QAIT 79 + + ++ P E L RCI C C CP A+ Sbjct: 271 YTTFSTGPRRGDDLDGPQEYHVVLVDNGRTRMLAGEFRDMLRCIRCGACMNHCPVYGAVG 330 Query: 80 IESGPRCHDGTR---------RTVRYDIDMIKCIYCGLCQEACPV 115 + + G C G C E CPV Sbjct: 331 GHAYGWVYPGPMGAVLTPLLQGIEHDTDLPNACTLNGRCAEVCPV 375 Score = 35.1 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 14/25 (56%) Query: 100 MIKCIYCGLCQEACPVDAIVEGPNF 124 M++CI CG C CPV V G + Sbjct: 310 MLRCIRCGACMNHCPVYGAVGGHAY 334 >gi|258513534|ref|YP_003189756.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfotomaculum acetoxidans DSM 771] gi|257777239|gb|ACV61133.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfotomaculum acetoxidans DSM 771] Length = 443 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 11/59 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 E++C C C CP +AI + G I +CI CG C + CP A Sbjct: 11 DEDKCKGCTNCVKRCPTEAIRVREGRAL-----------IIEERCIDCGECIKICPNRA 58 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 9/30 (30%), Positives = 13/30 (43%) Query: 89 GTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + +D KC C C + CP +AI Sbjct: 1 MQKYFHSVRLDEDKCKGCTNCVKRCPTEAI 30 >gi|291288415|ref|YP_003505231.1| nitroreductase [Denitrovibrio acetiphilus DSM 12809] gi|290885575|gb|ADD69275.1| nitroreductase [Denitrovibrio acetiphilus DSM 12809] Length = 274 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 8/66 (12%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + + E +C C LC CP + I I +G + KC+ C C Sbjct: 1 MLNFIIDESKCTKCGLCAVDCPTKIIDITNGI--------PFIQQKNEGKCMGCQHCLAV 52 Query: 113 CPVDAI 118 CPV A+ Sbjct: 53 CPVAAL 58 Score = 38.5 bits (88), Expect = 0.31, Method: Composition-based stats. Identities = 11/30 (36%), Positives = 13/30 (43%) Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + + ID KC CGLC CP I Sbjct: 1 MLNFIIDESKCTKCGLCAVDCPTKIIDITN 30 >gi|268590651|ref|ZP_06124872.1| hydrogenase-2 operon protein HybA [Providencia rettgeri DSM 1131] gi|291314044|gb|EFE54497.1| hydrogenase-2 operon protein HybA [Providencia rettgeri DSM 1131] Length = 328 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 23/96 (23%), Positives = 35/96 (36%), Gaps = 12/96 (12%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL--CQEACP 114 C C+ C CP + + + + + GL C E CP Sbjct: 137 HYDASVCTGCRYCMVACPFNIPKYAYDDKFGAIHKCELCNQKGVERLDKGGLPGCVEVCP 196 Query: 115 VDAIVEGPNFEFATETRQELYYD-KERL-LNNGDRW 148 A++ G TR+EL + K+RL L GD + Sbjct: 197 TGAVIFG--------TREELLAEAKKRLTLKVGDEY 224 Score = 35.5 bits (80), Expect = 2.7, Method: Composition-based stats. Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 11/71 (15%) Query: 48 RGEHALRRYPNGEERCIAC--KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 + Y +++C+ C C ++CP QA+ + +T D C Sbjct: 95 HKDQEKDGYAYIKKQCMHCVDPNCVSVCPVQALKKDP---------KTGIVHYDASVCTG 145 Query: 106 CGLCQEACPVD 116 C C ACP + Sbjct: 146 CRYCMVACPFN 156 >gi|167818545|ref|ZP_02450225.1| iron-sulfur binding protein [Burkholderia pseudomallei 91] Length = 438 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 26/105 (24%), Gaps = 10/105 (9%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-QAIT 79 + + ++ P E L RCI C C CP A+ Sbjct: 276 YTTFSTGPRRGDDLDGPQEYHVVLVDNGRTRMLAGEFRDMLRCIRCGACMNHCPVYGAVG 335 Query: 80 IESGPRCHDGTR---------RTVRYDIDMIKCIYCGLCQEACPV 115 + + G C G C E CPV Sbjct: 336 GHAYGWVYPGPMGAVLTPLLQGIEHDTDLPNACTLNGRCAEVCPV 380 Score = 35.1 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 14/25 (56%) Query: 100 MIKCIYCGLCQEACPVDAIVEGPNF 124 M++CI CG C CPV V G + Sbjct: 315 MLRCIRCGACMNHCPVYGAVGGHAY 339 >gi|167755791|ref|ZP_02427918.1| hypothetical protein CLORAM_01306 [Clostridium ramosum DSM 1402] gi|167704730|gb|EDS19309.1| hypothetical protein CLORAM_01306 [Clostridium ramosum DSM 1402] Length = 582 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 3/68 (4%) Query: 59 GEERCIACKLCEAIC-PAQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115 +C+ C C C Q + I T+ YD M C+ CG C CPV Sbjct: 144 NTSKCVLCGRCVETCAKTQGLGILGFMNRGFKTKVGPVYDKSMNDVNCMQCGQCINVCPV 203 Query: 116 DAIVEGPN 123 A+ E Sbjct: 204 GALQEKEE 211 >gi|152981248|ref|YP_001355342.1| NAD-dependent formate dehydrogenase alpha subunit [Janthinobacterium sp. Marseille] gi|151281325|gb|ABR89735.1| NAD-dependent formate dehydrogenase alpha subunit [Janthinobacterium sp. Marseille] Length = 957 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 23/69 (33%), Gaps = 3/69 (4%) Query: 55 RYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 + +CI C C C T G + D +C+ CG C + Sbjct: 159 YFTYDASKCIVCNRCVRACEETQGTFALTIDGRGFTSRVSAGQKEDFIDSECVSCGACVD 218 Query: 112 ACPVDAIVE 120 ACP + E Sbjct: 219 ACPTATLTE 227 >gi|154251980|ref|YP_001412804.1| cytochrome c oxidase cbb3 type accessory protein FixG [Parvibaculum lavamentivorans DS-1] gi|154155930|gb|ABS63147.1| Cytochrome c oxidase cbb3 type accessory protein FixG [Parvibaculum lavamentivorans DS-1] Length = 513 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 22/66 (33%), Gaps = 16/66 (24%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 RG H G CI C C A CP D ++CI C Sbjct: 283 RGPHKKGTSWEGRGDCIDCGQCVAACPMG----------------IDIRDGMQLECIQCA 326 Query: 108 LCQEAC 113 LC +AC Sbjct: 327 LCIDAC 332 Score = 40.1 bits (92), Expect = 0.11, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 29/89 (32%), Gaps = 14/89 (15%) Query: 38 FEKGSTSPRFRGEHALRRYPNG----EERCIACKLCEAICPAQAITIES--------GPR 85 F+ + + F G AL Y G E+ CI +C A+ E Sbjct: 223 FDAPAIAYLFIGLFALTTYTLGGLAREQVCIY--MCPWPRIQGAMFDEESLLVSYKEDRG 280 Query: 86 CHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 G + CI CG C ACP Sbjct: 281 EKRGPHKKGTSWEGRGDCIDCGQCVAACP 309 >gi|53721357|ref|YP_110342.1| iron-sulfur binding protein [Burkholderia pseudomallei K96243] gi|52211771|emb|CAH37770.1| putative iron-sulfur binding protein [Burkholderia pseudomallei K96243] Length = 482 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 26/105 (24%), Gaps = 10/105 (9%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-QAIT 79 + + ++ P E L RCI C C CP A+ Sbjct: 276 YTTFSTGPRRGDDLDGPQEYHVVLVDNGRTRMLAGEFRDMLRCIRCGACMNHCPVYGAVG 335 Query: 80 IESGPRCHDGTR---------RTVRYDIDMIKCIYCGLCQEACPV 115 + + G C G C E CPV Sbjct: 336 GHAYGWVYPGPMGAVLTPLLQGIEHDTDLPNACTLNGRCAEVCPV 380 Score = 35.1 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 14/25 (56%) Query: 100 MIKCIYCGLCQEACPVDAIVEGPNF 124 M++CI CG C CPV V G + Sbjct: 315 MLRCIRCGACMNHCPVYGAVGGHAY 339 >gi|167896996|ref|ZP_02484398.1| iron-sulfur cluster binding protein [Burkholderia pseudomallei 7894] gi|167905375|ref|ZP_02492580.1| iron-sulfur cluster binding protein [Burkholderia pseudomallei NCTC 13177] gi|167921614|ref|ZP_02508705.1| iron-sulfur cluster binding protein [Burkholderia pseudomallei BCC215] gi|217423155|ref|ZP_03454657.1| iron-sulfur cluster-binding protein [Burkholderia pseudomallei 576] gi|254299416|ref|ZP_04966865.1| iron-sulfur cluster-binding protein [Burkholderia pseudomallei 406e] gi|157809511|gb|EDO86681.1| iron-sulfur cluster-binding protein [Burkholderia pseudomallei 406e] gi|217394063|gb|EEC34083.1| iron-sulfur cluster-binding protein [Burkholderia pseudomallei 576] Length = 477 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 26/105 (24%), Gaps = 10/105 (9%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-QAIT 79 + + ++ P E L RCI C C CP A+ Sbjct: 271 YTTFSTGPRRGDDLDGPQEYHVVLVDNGRTRMLAGEFRDMLRCIRCGACMNHCPVYGAVG 330 Query: 80 IESGPRCHDGTR---------RTVRYDIDMIKCIYCGLCQEACPV 115 + + G C G C E CPV Sbjct: 331 GHAYGWVYPGPMGAVLTPLLQGIEHDTDLPNACTLNGRCAEVCPV 375 Score = 35.1 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 14/25 (56%) Query: 100 MIKCIYCGLCQEACPVDAIVEGPNF 124 M++CI CG C CPV V G + Sbjct: 310 MLRCIRCGACMNHCPVYGAVGGHAY 334 >gi|53716996|ref|YP_106036.1| iron-sulfur cluster binding protein [Burkholderia mallei ATCC 23344] gi|52422966|gb|AAU46536.1| iron-sulfur cluster binding protein [Burkholderia mallei ATCC 23344] Length = 482 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 26/105 (24%), Gaps = 10/105 (9%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-QAIT 79 + + ++ P E L RCI C C CP A+ Sbjct: 276 YTTFSTGPRRGDDLDGPQEYHVVLVDNGRTRMLAGEFRDMLRCIRCGACMNHCPVYGAVG 335 Query: 80 IESGPRCHDGTR---------RTVRYDIDMIKCIYCGLCQEACPV 115 + + G C G C E CPV Sbjct: 336 GHAYGWVYPGPMGAVLTPLLQGIEHDTDLPNACTLNGRCAEVCPV 380 Score = 35.1 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 14/25 (56%) Query: 100 MIKCIYCGLCQEACPVDAIVEGPNF 124 M++CI CG C CPV V G + Sbjct: 315 MLRCIRCGACMNHCPVYGAVGGHAY 339 >gi|218768441|ref|YP_002342953.1| conserved hypothetical iron-sulphur protein [Neisseria meningitidis Z2491] gi|121052449|emb|CAM08785.1| conserved hypothetical iron-sulphur protein [Neisseria meningitidis Z2491] gi|319410685|emb|CBY91064.1| putative ferredoxin-like protein [Neisseria meningitidis WUE 2594] gi|325130521|gb|EGC53276.1| iron-sulfur cluster binding protein [Neisseria meningitidis OX99.30304] gi|325201865|gb|ADY97319.1| iron-sulfur cluster binding protein [Neisseria meningitidis M01-240149] gi|325208383|gb|ADZ03835.1| iron-sulfur cluster binding protein [Neisseria meningitidis NZ-05/33] Length = 484 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 18/65 (27%), Gaps = 10/65 (15%) Query: 62 RCIACKLCEAICPA-----QAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQE 111 +CI C C CP A + P C CG C E Sbjct: 317 QCIRCGACMNHCPVYTRIGGAAYGTTYPGPIGEIISPHLLGLDATRDLPTACTMCGACVE 376 Query: 112 ACPVD 116 CPV Sbjct: 377 VCPVR 381 >gi|126456646|ref|YP_001074502.1| iron-sulfur cluster-binding protein [Burkholderia pseudomallei 1106a] gi|134284218|ref|ZP_01770910.1| iron-sulfur cluster-binding protein [Burkholderia pseudomallei 305] gi|167848444|ref|ZP_02473952.1| iron-sulfur cluster-binding protein [Burkholderia pseudomallei B7210] gi|167913674|ref|ZP_02500765.1| iron-sulfur cluster-binding protein [Burkholderia pseudomallei 112] gi|242313873|ref|ZP_04812890.1| iron-sulfur cluster-binding protein [Burkholderia pseudomallei 1106b] gi|254189362|ref|ZP_04895872.1| iron-sulfur cluster-binding protein [Burkholderia pseudomallei Pasteur 52237] gi|126230414|gb|ABN93827.1| iron-sulfur cluster-binding protein [Burkholderia pseudomallei 1106a] gi|134244421|gb|EBA44527.1| iron-sulfur cluster-binding protein [Burkholderia pseudomallei 305] gi|157937040|gb|EDO92710.1| iron-sulfur cluster-binding protein [Burkholderia pseudomallei Pasteur 52237] gi|242137112|gb|EES23515.1| iron-sulfur cluster-binding protein [Burkholderia pseudomallei 1106b] Length = 477 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 26/105 (24%), Gaps = 10/105 (9%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-QAIT 79 + + ++ P E L RCI C C CP A+ Sbjct: 271 YTTFSTGPRRGDDLDGPQEYHVVLVDNGRTRMLAGEFRDMLRCIRCGACMNHCPVYGAVG 330 Query: 80 IESGPRCHDGTR---------RTVRYDIDMIKCIYCGLCQEACPV 115 + + G C G C E CPV Sbjct: 331 GHAYGWVYPGPMGAVLTPLLQGIEHDTDLPNACTLNGRCAEVCPV 375 Score = 35.1 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 14/25 (56%) Query: 100 MIKCIYCGLCQEACPVDAIVEGPNF 124 M++CI CG C CPV V G + Sbjct: 310 MLRCIRCGACMNHCPVYGAVGGHAY 334 >gi|126442529|ref|YP_001061562.1| iron-sulfur cluster binding protein [Burkholderia pseudomallei 668] gi|126222020|gb|ABN85525.1| iron-sulfur cluster-binding protein [Burkholderia pseudomallei 668] Length = 477 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 26/105 (24%), Gaps = 10/105 (9%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-QAIT 79 + + ++ P E L RCI C C CP A+ Sbjct: 271 YTTFSTGPRRGDDLDGPQEYHVVLVDNGRTRMLAGEFRDMLRCIRCGACMNHCPVYGAVG 330 Query: 80 IESGPRCHDGTR---------RTVRYDIDMIKCIYCGLCQEACPV 115 + + G C G C E CPV Sbjct: 331 GHAYGWVYPGPMGAVLTPLLQGIEHDTDLPNACTLNGRCAEVCPV 375 Score = 35.1 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 14/25 (56%) Query: 100 MIKCIYCGLCQEACPVDAIVEGPNF 124 M++CI CG C CPV V G + Sbjct: 310 MLRCIRCGACMNHCPVYGAVGGHAY 334 >gi|254182689|ref|ZP_04889282.1| iron-sulfur cluster-binding protein [Burkholderia pseudomallei 1655] gi|184213223|gb|EDU10266.1| iron-sulfur cluster-binding protein [Burkholderia pseudomallei 1655] Length = 477 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 26/105 (24%), Gaps = 10/105 (9%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-QAIT 79 + + ++ P E L RCI C C CP A+ Sbjct: 271 YTTFSTGPRRGDDLDGPQEYHVVLVDNGRTRMLAGEFRDMLRCIRCGACMNHCPVYGAVG 330 Query: 80 IESGPRCHDGTR---------RTVRYDIDMIKCIYCGLCQEACPV 115 + + G C G C E CPV Sbjct: 331 GHAYGWVYPGPMGAVLTPLLQGIEHDTDLPNACTLNGRCAEVCPV 375 Score = 35.1 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 14/25 (56%) Query: 100 MIKCIYCGLCQEACPVDAIVEGPNF 124 M++CI CG C CPV V G + Sbjct: 310 MLRCIRCGACMNHCPVYGAVGGHAY 334 >gi|67643358|ref|ZP_00442105.1| iron-sulfur cluster-binding protein [Burkholderia mallei GB8 horse 4] gi|251768069|ref|ZP_04820390.1| iron-sulfur cluster-binding protein [Burkholderia mallei PRL-20] gi|254176148|ref|ZP_04882806.1| iron-sulfur cluster-binding protein [Burkholderia mallei ATCC 10399] gi|254200890|ref|ZP_04907255.1| iron-sulfur cluster-binding protein [Burkholderia mallei FMH] gi|254204855|ref|ZP_04911208.1| iron-sulfur cluster-binding protein [Burkholderia mallei JHU] gi|147748502|gb|EDK55577.1| iron-sulfur cluster-binding protein [Burkholderia mallei FMH] gi|147754441|gb|EDK61505.1| iron-sulfur cluster-binding protein [Burkholderia mallei JHU] gi|160697190|gb|EDP87160.1| iron-sulfur cluster-binding protein [Burkholderia mallei ATCC 10399] gi|238524689|gb|EEP88121.1| iron-sulfur cluster-binding protein [Burkholderia mallei GB8 horse 4] gi|243060887|gb|EES43073.1| iron-sulfur cluster-binding protein [Burkholderia mallei PRL-20] Length = 477 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 26/105 (24%), Gaps = 10/105 (9%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-QAIT 79 + + ++ P E L RCI C C CP A+ Sbjct: 271 YTTFSTGPRRGDDLDGPQEYHVVLVDNGRTRMLAGEFRDMLRCIRCGACMNHCPVYGAVG 330 Query: 80 IESGPRCHDGTR---------RTVRYDIDMIKCIYCGLCQEACPV 115 + + G C G C E CPV Sbjct: 331 GHAYGWVYPGPMGAVLTPLLQGIEHDTDLPNACTLNGRCAEVCPV 375 Score = 35.1 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 14/25 (56%) Query: 100 MIKCIYCGLCQEACPVDAIVEGPNF 124 M++CI CG C CPV V G + Sbjct: 310 MLRCIRCGACMNHCPVYGAVGGHAY 334 >gi|325474291|gb|EGC77479.1| ferredoxin [Treponema denticola F0402] Length = 58 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 22/68 (32%), Positives = 27/68 (39%), Gaps = 11/68 (16%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 ++ C C CE+ CP AI+ G ID CI CG C Sbjct: 1 MQMAYKISNECTNCAACESECPVNAISEAGGKHV-----------IDADTCISCGACAGV 49 Query: 113 CPVDAIVE 120 CPV+AI E Sbjct: 50 CPVEAISE 57 >gi|313680914|ref|YP_004058653.1| ferredoxin [Oceanithermus profundus DSM 14977] gi|313153629|gb|ADR37480.1| ferredoxin [Oceanithermus profundus DSM 14977] Length = 217 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 4/68 (5%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR----TVRYDIDMIKCIYCGLCQ 110 + +C C+ C C + + G + + C++CG C Sbjct: 136 FFVRDYAKCYTCRRCIDACGEGVQGVWAYSTTGRGHAAVPGTPLDLPLPATPCVFCGNCV 195 Query: 111 EACPVDAI 118 + CP A+ Sbjct: 196 QVCPTGAL 203 >gi|326314843|ref|YP_004232515.1| 4Fe-4S ferredoxin iron-sulfur-binding domain-containing protein [Acidovorax avenae subsp. avenae ATCC 19860] gi|323371679|gb|ADX43948.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Acidovorax avenae subsp. avenae ATCC 19860] Length = 86 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 21/70 (30%), Positives = 27/70 (38%), Gaps = 10/70 (14%) Query: 59 GEERCIACKLCEAICPAQAIT--------IESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 RC C C A+C ++ E P G +R+V +D C C LC Sbjct: 13 DPGRCTGCGRCVAVCAPHVLSLGTEGGPGREGAPLPPWGPKRSVLHD--PAGCTGCALCA 70 Query: 111 EACPVDAIVE 120 CP DAI Sbjct: 71 VHCPFDAIRM 80 >gi|269216555|ref|ZP_06160409.1| indolepyruvate oxidoreductase subunit IorA [Slackia exigua ATCC 700122] gi|269130084|gb|EEZ61166.1| indolepyruvate oxidoreductase subunit IorA [Slackia exigua ATCC 700122] Length = 657 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 11/60 (18%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ++ C C+ C AI R ID C+ CG C + CP A+ Sbjct: 591 DQDACTKCRRCITAIGCPAIGFMDD-----------RIMIDETICMGCGQCVQVCPYGAM 639 >gi|237810768|ref|YP_002895219.1| ferredoxin [Burkholderia pseudomallei MSHR346] gi|251767337|ref|ZP_02266850.2| ferredoxin [Burkholderia mallei PRL-20] gi|237505466|gb|ACQ97784.1| ferredoxin [Burkholderia pseudomallei MSHR346] gi|243063120|gb|EES45306.1| ferredoxin [Burkholderia mallei PRL-20] Length = 125 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 30/106 (28%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYC------GLCQEACP 114 + CI C +CE CP AI++ Y ID KC C CQ+ CP Sbjct: 44 DECINCDVCEPECPNGAISMGPE-----------IYVIDPNKCTECVGHFDEPQCQQVCP 92 Query: 115 VDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIVTDS 160 V+ I + P R E K++L+ ++ + I D+ Sbjct: 93 VECIPQDPG-------RPE---TKDQLMA---KYRALIAAEQKDDA 125 Score = 34.7 bits (78), Expect = 4.3, Method: Composition-based stats. Identities = 10/26 (38%), Positives = 14/26 (53%) Query: 98 IDMIKCIYCGLCQEACPVDAIVEGPN 123 + +CI C +C+ CP AI GP Sbjct: 41 MITDECINCDVCEPECPNGAISMGPE 66 >gi|187779575|ref|ZP_02996048.1| hypothetical protein CLOSPO_03171 [Clostridium sporogenes ATCC 15579] gi|187773200|gb|EDU37002.1| hypothetical protein CLOSPO_03171 [Clostridium sporogenes ATCC 15579] Length = 574 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 11/71 (15%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 + C C C CP +AI ++ +I +CI CG C Sbjct: 1 MNYIDISGLNCKNCYKCLRACPVKAIKFKNEKA-----------EIVEERCISCGRCLVI 49 Query: 113 CPVDAIVEGPN 123 CP +A + P+ Sbjct: 50 CPQNAKKDKPD 60 >gi|158334026|ref|YP_001515198.1| iron-sulfur cluster binding protein [Acaryochloris marina MBIC11017] gi|158304267|gb|ABW25884.1| iron-sulfur cluster binding protein, putative [Acaryochloris marina MBIC11017] Length = 149 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 9/60 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E+ C+ C LC ICP QA+T++ ++ + +CI C C CPV AI Sbjct: 95 DEDSCVHCGLCTGICPTQALTLDP---------KSFLLNFTRSRCIVCEQCVPTCPVQAI 145 Score = 38.9 bits (89), Expect = 0.26, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 32/116 (27%), Gaps = 8/116 (6%) Query: 28 FKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCH 87 K + T+ +P +R N +A + A I+ Sbjct: 16 VKKRVTLTFPRRAVPVPVTYRLAKDFNVAANIIRAQVAPNQIGKLVVELAGDIDQLDAAI 75 Query: 88 DGTRRTVRYD--------IDMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELY 135 D ID C++CGLC CP A+ P TR Sbjct: 76 DWMISQNIDVSSSNREILIDEDSCVHCGLCTGICPTQALTLDPKSFLLNFTRSRCI 131 >gi|148553514|ref|YP_001261096.1| cyclic nucleotide-binding protein [Sphingomonas wittichii RW1] gi|148498704|gb|ABQ66958.1| cyclic nucleotide-binding protein [Sphingomonas wittichii RW1] Length = 801 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 20/93 (21%), Gaps = 28/93 (30%) Query: 59 GEERCIACKLCEAICPA----------QAITIESGPRCHDGTRRTVRYDIDMIK------ 102 E C+ C CE C +A + R Sbjct: 625 DENLCVGCDNCEKACADSHEGISRLDREAGRTFAHLHVPTSCRHCEHPHCMADCPPTAIH 684 Query: 103 ------------CIYCGLCQEACPVDAIVEGPN 123 CI CG CQ CP I Sbjct: 685 RGQDGEVYIDDTCIGCGNCQRNCPYGVIRMEKE 717 Score = 38.5 bits (88), Expect = 0.30, Method: Composition-based stats. Identities = 21/129 (16%), Positives = 32/129 (24%), Gaps = 37/129 (28%) Query: 23 CLRYFFKAKT--TINYPFEK--GSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78 + + +P + RG+ + CI C C+ CP I Sbjct: 656 TFAHLHVPTSCRHCEHPHCMADCPPTAIHRGQDGEVYIDD---TCIGCGNCQRNCPYGVI 712 Query: 79 TIESGPRCHDGTRRTVRYDIDMI------------------------KCIYC-GL----- 108 +E P + + KC C G+ Sbjct: 713 RMEKEPPQKPSLWKWFLFGQGPGPGEPSHDWAYANATPGVEKAKRAVKCDMCSGIEGGPS 772 Query: 109 CQEACPVDA 117 C ACP A Sbjct: 773 CVRACPTGA 781 >gi|111220922|ref|YP_711716.1| ferredoxin [Frankia alni ACN14a] gi|111148454|emb|CAJ60125.1| Ferredoxin (partial match) [Frankia alni ACN14a] Length = 140 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 13/48 (27%), Positives = 18/48 (37%) Query: 78 ITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 + + I +CI CG C CPVDAIV + + Sbjct: 15 RSCVDECPVDCVYEGRRKLYIHPEECIDCGACARVCPVDAIVWERDLD 62 >gi|46125447|ref|XP_387277.1| hypothetical protein FG07101.1 [Gibberella zeae PH-1] Length = 607 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 19/66 (28%), Positives = 24/66 (36%), Gaps = 3/66 (4%) Query: 69 CEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP---NFE 125 C C + SG C + + I CI CG+C + CP DAI N E Sbjct: 21 CRQECKKSCPVVRSGKLCIEVQPESKLAFISESLCIGCGICPKRCPFDAINIINLPTNLE 80 Query: 126 FATETR 131 R Sbjct: 81 NQVTHR 86 >gi|125972856|ref|YP_001036766.1| hydrogenase large subunit-like protein [Clostridium thermocellum ATCC 27405] gi|256005726|ref|ZP_05430681.1| Fe-S cluster domain protein [Clostridium thermocellum DSM 2360] gi|281417055|ref|ZP_06248075.1| Fe-S cluster domain protein [Clostridium thermocellum JW20] gi|125713081|gb|ABN51573.1| hydrogenase large subunit-like protein [Clostridium thermocellum ATCC 27405] gi|255990299|gb|EEU00426.1| Fe-S cluster domain protein [Clostridium thermocellum DSM 2360] gi|281408457|gb|EFB38715.1| Fe-S cluster domain protein [Clostridium thermocellum JW20] gi|316940906|gb|ADU74940.1| Fe-S cluster domain protein [Clostridium thermocellum DSM 1313] Length = 448 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 21/67 (31%), Gaps = 11/67 (16%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQ 110 E +C C C CP +AI + I +CI CG C Sbjct: 3 PYFHSVTLDEVKCKGCTNCIKRCPTEAIRVRKSKA-----------RIINERCIDCGECI 51 Query: 111 EACPVDA 117 CP A Sbjct: 52 RVCPYHA 58 >gi|332291297|ref|YP_004429906.1| hypothetical protein Krodi_0653 [Krokinobacter diaphorus 4H-3-7-5] gi|332169383|gb|AEE18638.1| hypothetical protein Krodi_0653 [Krokinobacter diaphorus 4H-3-7-5] Length = 544 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 10/67 (14%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R + R NG +CI+C C C + +I C+ CG Sbjct: 449 RFKSRFRITTNG-GQCISCGNCSTYCEQGIDVRAYAQKGE---------NIVRSSCVGCG 498 Query: 108 LCQEACP 114 +C CP Sbjct: 499 VCSAVCP 505 >gi|325499672|gb|EGC97531.1| ferredoxin [Escherichia fergusonii ECD227] Length = 176 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 37/114 (32%), Gaps = 9/114 (7%) Query: 12 FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71 + +E + ++ R F+A + P AL +C C LC Sbjct: 7 YYQELMSHRYVSRRGLFRAFVSAARPVTTPILPVHSLPPGAL-PDAQFRVQCTQCDLCIN 65 Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 CP + + I+ C CGLC AC +A+ F+ Sbjct: 66 ACPMGILNRHEDGYP--------QLVIEFASCDGCGLCIAACSTEALRPQARFD 111 >gi|325264637|ref|ZP_08131367.1| conserved domain protein [Clostridium sp. D5] gi|324030299|gb|EGB91584.1| conserved domain protein [Clostridium sp. D5] Length = 56 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 21/65 (32%), Positives = 26/65 (40%), Gaps = 11/65 (16%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + C++C CE CP AI G Y ID C+ CG C+ ACP Sbjct: 1 MAHFINDECVSCGSCEGECPVGAIAEGDGK-----------YVIDADACVDCGACEGACP 49 Query: 115 VDAIV 119 AI Sbjct: 50 TGAIQ 54 >gi|322379286|ref|ZP_08053672.1| Pyruvate ferrodoxin oxidoreductase (PorD) [Helicobacter suis HS1] gi|321148323|gb|EFX42837.1| Pyruvate ferrodoxin oxidoreductase (PorD) [Helicobacter suis HS1] Length = 142 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 22/59 (37%), Gaps = 10/59 (16%) Query: 58 NGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + +E CI C C C P +R ID C CG+C + CP + Sbjct: 53 HNKEVCINCFNCWVYC----------PDASILSREGKMSGIDYEHCKGCGVCVDVCPTN 101 >gi|320353241|ref|YP_004194580.1| cobyrinic acid ac-diamide synthase [Desulfobulbus propionicus DSM 2032] gi|320121743|gb|ADW17289.1| cobyrinic acid ac-diamide synthase [Desulfobulbus propionicus DSM 2032] Length = 288 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 22/63 (34%), Gaps = 11/63 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 E +C C+ C IC A+ + R I C CG C CP AI Sbjct: 63 NESKCTFCRKCSDICRFNALAV-----------VGKRVLIFAELCHSCGGCMLVCPEGAI 111 Query: 119 VEG 121 E Sbjct: 112 TET 114 >gi|256830313|ref|YP_003159041.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfomicrobium baculatum DSM 4028] gi|256579489|gb|ACU90625.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfomicrobium baculatum DSM 4028] Length = 399 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 6/55 (10%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPV 115 + C C+ C ICP Q IT+ + +R ID +C+ C LC+++CPV Sbjct: 10 DYCTGCEACRNICPEQCITMVAD------YAGFLRPVIDADRCVGCLLCEKSCPV 58 >gi|304316437|ref|YP_003851582.1| sulfite reductase subunit C [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777939|gb|ADL68498.1| sulfite reductase, subunit C [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 337 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 26/87 (29%), Gaps = 8/87 (9%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P + G + + +RCI CK C C A + Sbjct: 152 CPNDCAKAHFNDFGIIGITKTEYDYDRCIGCKKCIEACKQHA--------TGVLYMVNGK 203 Query: 96 YDIDMIKCIYCGLCQEACPVDAIVEGP 122 + D C+ CG C CP A P Sbjct: 204 IEKDSCCCVGCGECALVCPTGAWSRNP 230 >gi|254805218|ref|YP_003083439.1| conserved hypothetical iron-sulphur protein [Neisseria meningitidis alpha14] gi|254668760|emb|CBA06642.1| conserved hypothetical iron-sulphur protein [Neisseria meningitidis alpha14] gi|254670258|emb|CBA05509.1| conserved hypothetical iron-sulphur protein [Neisseria meningitidis alpha153] gi|325136519|gb|EGC59123.1| iron-sulfur cluster binding protein [Neisseria meningitidis M0579] Length = 484 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 18/65 (27%), Gaps = 10/65 (15%) Query: 62 RCIACKLCEAICPA-----QAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQE 111 +CI C C CP A + P C CG C E Sbjct: 317 QCIRCGACMNHCPVYTRIGGAAYGTTYPGPIGEIISPHLLGLDATRDLPTACTMCGACVE 376 Query: 112 ACPVD 116 CPV Sbjct: 377 VCPVR 381 >gi|256828932|ref|YP_003157660.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Desulfomicrobium baculatum DSM 4028] gi|256578108|gb|ACU89244.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Desulfomicrobium baculatum DSM 4028] Length = 271 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 20/119 (16%), Positives = 33/119 (27%), Gaps = 27/119 (22%) Query: 39 EKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDI 98 G+ R + AL ++C+ C C CP+ AI + + D R Sbjct: 175 VPGNIPYRDGVQPALISPETEADKCVLCGDCVRSCPSGAIKLVNDSVETDKMR------- 227 Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFEFATETRQELYYDKERLLNNGDRWESEIVRNIV 157 C+ C C C A + ++L G + Sbjct: 228 ----CLRCCACIRVCQAGARLMTH----------------PKILELGRTLHEKFAERRE 266 >gi|297566516|ref|YP_003685488.1| dihydroorotate dehydrogenase family protein [Meiothermus silvanus DSM 9946] gi|296850965|gb|ADH63980.1| dihydroorotate dehydrogenase family protein [Meiothermus silvanus DSM 9946] Length = 461 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 17/80 (21%), Positives = 24/80 (30%), Gaps = 18/80 (22%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID-----------------MI 101 ++CI C LC C A + + YD+ Sbjct: 341 DPDKCIKCNLCYVACNDTAHQCIDLVDANGNLVQPYSYDVRSNGRLEAVSTRPQPVVREE 400 Query: 102 KCIYCGLCQEACPVD-AIVE 120 C+ C LC CPV+ I Sbjct: 401 DCVGCRLCHNVCPVEGCIEM 420 >gi|261377740|ref|ZP_05982313.1| iron-sulfur cluster-binding protein [Neisseria cinerea ATCC 14685] gi|269146023|gb|EEZ72441.1| iron-sulfur cluster-binding protein [Neisseria cinerea ATCC 14685] Length = 484 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 18/65 (27%), Gaps = 10/65 (15%) Query: 62 RCIACKLCEAICPA-----QAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQE 111 +CI C C CP A + P C CG C E Sbjct: 317 QCIRCGACMNHCPVYTRIGGAAYGTTYPGPIGEIISPHLLGLDATRDLPTACTMCGACVE 376 Query: 112 ACPVD 116 CPV Sbjct: 377 VCPVR 381 >gi|261365016|ref|ZP_05977899.1| iron-sulfur cluster-binding protein [Neisseria mucosa ATCC 25996] gi|288566603|gb|EFC88163.1| iron-sulfur cluster-binding protein [Neisseria mucosa ATCC 25996] Length = 484 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 18/65 (27%), Gaps = 10/65 (15%) Query: 62 RCIACKLCEAICPA-----QAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQE 111 +CI C C CP A + P C CG C E Sbjct: 317 QCIRCGACMNHCPVYTRIGGAAYGTTYPGPIGEIISPHLLGLDATRDLPTACTMCGACVE 376 Query: 112 ACPVD 116 CPV Sbjct: 377 VCPVR 381 >gi|225682813|gb|EEH21097.1| aliphatic sulfonates import ATP-binding protein ssuB 1 [Paracoccidioides brasiliensis Pb03] Length = 600 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 3/68 (4%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP---N 123 K C C + +G C + T + I CI CG+C + CP AI N Sbjct: 15 KKCRQECKKSCPVVRTGKLCIEVTPESKIAFISERLCIGCGICPKKCPFGAIHIINLPTN 74 Query: 124 FEFATETR 131 E R Sbjct: 75 LETQVTHR 82 >gi|167044778|gb|ABZ09447.1| putative 4Fe-4S binding domain protein [uncultured marine microorganism HF4000_APKG8C21] Length = 416 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 31/93 (33%), Gaps = 12/93 (12%) Query: 56 YPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI-------YCGL 108 C C++C CP +A+ E R + + +C C + Sbjct: 254 DYGIHRFCQQCQVCVNRCPGRALVKEK-----VWWRGVEKNKLIYDRCRPVMARYEGCAV 308 Query: 109 CQEACPVDAIVEGPNFEFATETRQELYYDKERL 141 C + CPV P E ET + L E L Sbjct: 309 CMKVCPVQRYGMKPVMEHYIETGEVLGKGTENL 341 >gi|197116430|ref|YP_002136857.1| heterodisulfide reductase subunit A [Geobacter bemidjiensis Bem] gi|197085790|gb|ACH37061.1| heterodisulfide reductase, subunit A [Geobacter bemidjiensis Bem] Length = 665 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 E+ C+ C C+ +CP A+ E R G V ++ C CG CQ CP Sbjct: 590 NEKYCVGCLACKKVCPYGAVE-EKEIRDRQGNLVKVVAYVNPGVCGGCGTCQATCP 644 >gi|222054475|ref|YP_002536837.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp. FRC-32] gi|221563764|gb|ACM19736.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp. FRC-32] Length = 368 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 19/63 (30%), Positives = 22/63 (34%), Gaps = 11/63 (17%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E C C C C AI I G ID +C+ CG C AC A+ Sbjct: 193 EFCTGCGACLKSCAHDAIAIIEGKAA-----------IDQEECVGCGRCVTACMQQAVNI 241 Query: 121 GPN 123 N Sbjct: 242 QWN 244 >gi|56477090|ref|YP_158679.1| putative iron-sulfur binding protein [Aromatoleum aromaticum EbN1] gi|56313133|emb|CAI07778.1| putative iron-sulfur binding protein [Aromatoleum aromaticum EbN1] Length = 689 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 21/104 (20%), Positives = 35/104 (33%), Gaps = 17/104 (16%) Query: 19 AFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAI 78 A L +R+ P E+ + C C C + CP+ A+ Sbjct: 521 ALELSIRHLL---AVAPQPVEEIPLAAGAPFGSVSVSD-----ACTLCMSCVSACPSGAL 572 Query: 79 TIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP 122 + S ++ C+ CGLC +CP +A+ P Sbjct: 573 SAASDAMRLGFIEKS---------CVQCGLCASSCPENAVTLMP 607 >gi|305666269|ref|YP_003862556.1| pyridine nucleotide-disulphide oxidoreductase domain-containing protein [Maribacter sp. HTCC2170] gi|88708260|gb|EAR00497.1| Pyridine nucleotide-disulphide oxidoreductase domain protein [Maribacter sp. HTCC2170] Length = 529 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 10/67 (14%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCG 107 R + R NG +CI+C C C + +I C+ CG Sbjct: 438 RFKSRFRITTNG-GQCISCGNCSTYCEQGIDVRAYAQKGE---------NIVRSSCVGCG 487 Query: 108 LCQEACP 114 +C CP Sbjct: 488 VCSAVCP 494 >gi|84393396|ref|ZP_00992155.1| electron transport complex protein RnfC [Vibrio splendidus 12B01] gi|84376005|gb|EAP92894.1| electron transport complex protein RnfC [Vibrio splendidus 12B01] Length = 967 Score = 42.8 bits (99), Expect = 0.016, Method: Composition-based stats. Identities = 25/105 (23%), Positives = 37/105 (35%), Gaps = 9/105 (8%) Query: 62 RCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEG 121 CI C C CPA + + ++++ CI CG C CP I Sbjct: 377 ECIRCSACAEACPAS-LLPQQLQWHAKANELDKCEELNIKDCIECGACAFVCP-SEIPLV 434 Query: 122 PNFEFAT---ETRQELYYDKERLLNNGDRWESEIVRNIVTDSPYR 163 + A +TR++ ER R+E E + D R Sbjct: 435 QYYRQAKAEIKTRKDEATAAER---AKIRFE-EKNARMERDKAER 475 >gi|320535768|ref|ZP_08035850.1| ferredoxin [Treponema phagedenis F0421] gi|320147378|gb|EFW38912.1| ferredoxin [Treponema phagedenis F0421] Length = 56 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 11/60 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 E CI C C++ CP AI+ ++ ID CI CG C E CP AI E Sbjct: 7 EECINCGACKSECPVNAISEQTDMHV-----------IDAGLCISCGACAEVCPAQAISE 55 >gi|253581030|ref|ZP_04858291.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847693|gb|EES75662.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 57 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 11/59 (18%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 + C++C CE+ CPA+AI+ Y ID C+ CG C +ACP +AI Sbjct: 7 DECVSCGTCESECPAEAISQGDE-----------HYVIDADACLDCGTCADACPTEAIH 54 >gi|239907342|ref|YP_002954083.1| nitroreductase domain protein [Desulfovibrio magneticus RS-1] gi|239797208|dbj|BAH76197.1| nitroreductase domain protein [Desulfovibrio magneticus RS-1] Length = 260 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 18/63 (28%), Positives = 25/63 (39%), Gaps = 9/63 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 ERC A LC A+CP+ + ++ R + CI CG C CP A+ Sbjct: 7 DRERCNADGLCAAVCPSGCLEADADGRPVVAEEK---------LCIACGHCVAVCPKSAL 57 Query: 119 VEG 121 Sbjct: 58 TIS 60 >gi|269792171|ref|YP_003317075.1| 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099806|gb|ACZ18793.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Thermanaerovibrio acidaminovorans DSM 6589] Length = 444 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 13/69 (18%) Query: 46 RFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIY 105 + +L R +RC+ C C+ C G + + CI Sbjct: 197 WILQKLSLTRVERHPDRCVNCGACDRAC-------------PMGITVSTAGRLSNGDCIS 243 Query: 106 CGLCQEACP 114 CG C E+CP Sbjct: 244 CGECVESCP 252 >gi|187779630|ref|ZP_02996103.1| hypothetical protein CLOSPO_03226 [Clostridium sporogenes ATCC 15579] gi|187773255|gb|EDU37057.1| hypothetical protein CLOSPO_03226 [Clostridium sporogenes ATCC 15579] Length = 285 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 24/112 (21%), Positives = 34/112 (30%), Gaps = 20/112 (17%) Query: 12 FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71 F E F + L + P S G EE+C AC +C Sbjct: 126 FGYELPSKFKITL---------VGCPNNCAKASINDIGIMGQAYVELNEEKCKACGICTK 176 Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 C +A+T+E+ C+ CG C CP A+ Sbjct: 177 SCRQKAVTVENKKIV-----------YKKDLCVNCGKCATVCPFGAMAIKDQ 217 >gi|116748289|ref|YP_844976.1| hydrogenases, Fe-only [Syntrophobacter fumaroxidans MPOB] gi|116697353|gb|ABK16541.1| hydrogenases, Fe-only [Syntrophobacter fumaroxidans MPOB] Length = 576 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 3/70 (4%) Query: 59 GEERCIACKLCEAIC-PAQAITIESGPRCHDGTRRTVRYDIDMIK--CIYCGLCQEACPV 115 +CI C+ C ++C Q + + T ++ + C+ CG C CP Sbjct: 144 DPRKCILCRRCISVCSEVQGVKALTTGHRGFNTLIAPAFNERLANVECVQCGQCSLVCPT 203 Query: 116 DAIVEGPNFE 125 AI E + E Sbjct: 204 GAIHEVDDTE 213 >gi|121607275|ref|YP_995082.1| RnfABCDGE type electron transport complex subunit B [Verminephrobacter eiseniae EF01-2] gi|121551915|gb|ABM56064.1| electron transport complex, RnfABCDGE type, B subunit [Verminephrobacter eiseniae EF01-2] Length = 220 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 21/64 (32%), Positives = 24/64 (37%), Gaps = 10/64 (15%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 E+ CI C LC +CP AI S + I C C LC CPVD Sbjct: 87 FIDEDWCIGCTLCLKVCPTDAIVGASKM----------MHTIIERYCTGCELCLPVCPVD 136 Query: 117 AIVE 120 I Sbjct: 137 CIAL 140 >gi|20808576|ref|NP_623747.1| pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductase, alpha subunit [Thermoanaerobacter tengcongensis MB4] gi|254479652|ref|ZP_05092953.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Carboxydibrachium pacificum DSM 12653] gi|20517204|gb|AAM25351.1| Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Thermoanaerobacter tengcongensis MB4] gi|214034406|gb|EEB75179.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Carboxydibrachium pacificum DSM 12653] Length = 583 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 12/62 (19%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +E+C C +C I +++ + ID +C C +CQ+ CP DAI Sbjct: 526 DQEKCKKCGMC---LRIGCPAI---------SKKDGIFSIDPDQCTGCTVCQQVCPFDAI 573 Query: 119 VE 120 Sbjct: 574 EC 575 >gi|51245519|ref|YP_065403.1| iron-sulfur cluster-binding protein [Desulfotalea psychrophila LSv54] gi|50876556|emb|CAG36396.1| related to iron-sulfur cluster-binding protein [Desulfotalea psychrophila LSv54] Length = 401 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 10/65 (15%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 +C+ C LC +C A++++S + +D C+ CG C AC A+ Sbjct: 221 NVHKCVGCGLCMELCQHGALSLDSNKKI----------QVDDQLCVGCGACLLACKTGAL 270 Query: 119 VEGPN 123 Sbjct: 271 QVNWE 275 >gi|114565955|ref|YP_753109.1| 4Fe-4S ferredoxin, iron-sulfur binding [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114336890|gb|ABI67738.1| 4Fe-4S ferredoxin, iron-sulfur binding [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 300 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 24/78 (30%), Gaps = 12/78 (15%) Query: 51 HALRRYPNGEERCIACKLCEAICPA-QAITIESGPRCHDG-----------TRRTVRYDI 98 R + + RCI C C C A T VR Sbjct: 176 ERYRFFEDILSRCIRCYACRQACVACNCRTCIFDETKPQWVGRETSISDNMMYHLVRASH 235 Query: 99 DMIKCIYCGLCQEACPVD 116 +CI CG C+ CPV+ Sbjct: 236 MAGRCIECGECERVCPVN 253 >gi|124381513|ref|YP_001025976.1| iron-sulfur cluster-binding protein [Burkholderia mallei NCTC 10229] gi|126447093|ref|YP_001078067.1| iron-sulfur cluster-binding protein [Burkholderia mallei NCTC 10247] gi|254358967|ref|ZP_04975239.1| iron-sulfur cluster-binding protein [Burkholderia mallei 2002721280] gi|126239947|gb|ABO03059.1| iron-sulfur cluster-binding protein [Burkholderia mallei NCTC 10247] gi|148028154|gb|EDK86114.1| iron-sulfur cluster-binding protein [Burkholderia mallei 2002721280] gi|261826356|gb|ABN00222.2| iron-sulfur cluster-binding protein [Burkholderia mallei NCTC 10229] Length = 477 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 19/105 (18%), Positives = 26/105 (24%), Gaps = 10/105 (9%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-QAIT 79 + + ++ P E L RCI C C CP A+ Sbjct: 271 YTTFSTGPRRGDDLDGPQEYHVVLVDNGRTRMLAGEFRDMLRCIRCGACMNHCPVYGAVG 330 Query: 80 IESGPRCHDGTR---------RTVRYDIDMIKCIYCGLCQEACPV 115 + + G C G C E CPV Sbjct: 331 GHAYGWVYPGPMGAVLTPLLQGIEHDTDLPNACTLNGRCAEVCPV 375 Score = 35.1 bits (79), Expect = 3.5, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 14/25 (56%) Query: 100 MIKCIYCGLCQEACPVDAIVEGPNF 124 M++CI CG C CPV V G + Sbjct: 310 MLRCIRCGACMNHCPVYGAVGGHAY 334 >gi|322371960|ref|ZP_08046502.1| hypothetical protein ZOD2009_20702 [Haladaptatus paucihalophilus DX253] gi|320548382|gb|EFW90054.1| hypothetical protein ZOD2009_20702 [Haladaptatus paucihalophilus DX253] Length = 734 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 26/116 (22%), Positives = 30/116 (25%), Gaps = 27/116 (23%) Query: 27 FFKAKTT-----INYPFEKGSTSPRFR---------GEHALRRYPN--GEERCIACKLCE 70 F T +P E G R R G A+R CI C C Sbjct: 271 LFSPPTDSPTLDFEHPDEPGFGPQRDREFHLVLIDNGRMAMREDDQLRETLYCIRCGACA 330 Query: 71 AICPA------QAITIESGPRCHDGTRRTVRYDI-----DMIKCIYCGLCQEACPV 115 C A E+ T + I C C C ACPV Sbjct: 331 NSCANFQHVGGHAFGGETYTGGIATGWETGVHGIESAGEFNDLCTGCSRCVNACPV 386 >gi|317030846|ref|XP_001392338.2| translation initiation factor RLI1 [Aspergillus niger CBS 513.88] Length = 587 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 3/68 (4%) Query: 67 KLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVEGP---N 123 K C C + +G C + T + I CI CG+C + CP AI N Sbjct: 2 KKCRQECKKSCPVVRTGKLCIEVTPESKIAFISERLCIGCGICPKKCPFGAIHIINLPTN 61 Query: 124 FEFATETR 131 E R Sbjct: 62 LETQVTHR 69 >gi|315925133|ref|ZP_07921350.1| ferredoxin hydrogenase [Pseudoramibacter alactolyticus ATCC 23263] gi|315622032|gb|EFV01996.1| ferredoxin hydrogenase [Pseudoramibacter alactolyticus ATCC 23263] Length = 580 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 18/80 (22%), Positives = 25/80 (31%), Gaps = 5/80 (6%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPA----QAITIESGPRCHDGTRRTVRYDIDMIKC 103 R + +CI C C +C E R +I+ C Sbjct: 130 RPWNRDFPLIRDAAKCIKCMRCIQVCDKMQSLGVWDFEGTGSRSTVNVSHAR-NIEDAGC 188 Query: 104 IYCGLCQEACPVDAIVEGPN 123 CG C CPV A+ E + Sbjct: 189 SLCGQCVTHCPVGALSERDD 208 >gi|315425177|dbj|BAJ46847.1| Fe-S oxidoreductase [Candidatus Caldiarchaeum subterraneum] Length = 610 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 40/123 (32%), Gaps = 19/123 (15%) Query: 47 FRGEHALRRYPN-GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRY--------- 96 FR L G + C C CEA CPA A PR R + Sbjct: 218 FRSLTELGWMEKLGLDACTDCGRCEAACPAYAAGTPLSPRDIVQKLRRQLWRGDGLDEDV 277 Query: 97 -------DIDMIKCIYCGLCQEACPVDAIVEGPNFEF--ATETRQELYYDKERLLNNGDR 147 + ++ C C C EACPV E A +L K +L N R Sbjct: 278 FASGLIDEEEVWACTTCSACIEACPVLIRPMDYILEMRRALTLEGKLDKRKTAMLTNLSR 337 Query: 148 WES 150 + + Sbjct: 338 YGN 340 >gi|313898326|ref|ZP_07831863.1| 4Fe-4S binding domain protein [Clostridium sp. HGF2] gi|312956708|gb|EFR38339.1| 4Fe-4S binding domain protein [Clostridium sp. HGF2] Length = 254 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 12/73 (16%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCI 104 ++ + + P+ + C+ C C A CP QAI I+ + +CI Sbjct: 165 HPYKPYNGVPLKPSANQSCMQCGQCAAQCPVQAIPIKHPEKTD------------TDRCI 212 Query: 105 YCGLCQEACPVDA 117 C C CPV A Sbjct: 213 SCMRCIAVCPVHA 225 >gi|310777823|ref|YP_003966156.1| electron transport complex, RnfABCDGE type, C subunit [Ilyobacter polytropus DSM 2926] gi|309747146|gb|ADO81808.1| electron transport complex, RnfABCDGE type, C subunit [Ilyobacter polytropus DSM 2926] Length = 436 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 31/95 (32%), Gaps = 8/95 (8%) Query: 33 TINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRR 92 T N P KG++ + Y + CI C C CP + Sbjct: 337 TENVPVVKGTSGLLALTKEETNPYK--PKSCILCGKCVKACPINLLPNMYAKLARFKQWE 394 Query: 93 TVRYDIDMIKCIYCGLCQEACP-----VDAIVEGP 122 + + M CI CG C CP +AI G Sbjct: 395 EMGKNHLMD-CIECGSCSYICPANRPLTEAIKIGK 428 >gi|309379694|emb|CBX21683.1| unnamed protein product [Neisseria lactamica Y92-1009] Length = 484 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 18/65 (27%), Gaps = 10/65 (15%) Query: 62 RCIACKLCEAICPA-----QAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQE 111 +CI C C CP A + P C CG C E Sbjct: 317 QCIRCGACMNHCPVYTRIGGAAYGTTYPGPIGEIISPHLLGLDATRDLPTACTMCGACVE 376 Query: 112 ACPVD 116 CPV Sbjct: 377 VCPVR 381 >gi|291542068|emb|CBL15178.1| Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) [Ruminococcus bromii L2-63] Length = 56 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 20/63 (31%), Positives = 25/63 (39%), Gaps = 11/63 (17%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 + CI C C CP AI+ G Y+I+ C+ CG C E CP Sbjct: 1 MAYTISDDCIMCGACADNCPCDAISEGDGK-----------YEINADACVDCGSCAEVCP 49 Query: 115 VDA 117 V A Sbjct: 50 VGA 52 >gi|289662868|ref|ZP_06484449.1| ferredoxin [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 139 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 27/81 (33%), Positives = 31/81 (38%), Gaps = 11/81 (13%) Query: 43 TSPRFRGEHAL-RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMI 101 R RG H L + E CI C C CP AI G + + I + Sbjct: 67 PYDRSRGTHKLPQVAWIVEADCIGCTKCIQACPVDAIV---------GGAKHMHTVIAPL 117 Query: 102 KCIYCGLCQEACPVDAIVEGP 122 C C LC ACPVD I P Sbjct: 118 -CTGCELCLPACPVDCIELYP 137 Score = 35.8 bits (81), Expect = 2.0, Method: Composition-based stats. Identities = 13/38 (34%), Positives = 15/38 (39%) Query: 81 ESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 R + I CI C C +ACPVDAI Sbjct: 66 CPYDRSRGTHKLPQVAWIVEADCIGCTKCIQACPVDAI 103 >gi|255528042|ref|ZP_05394877.1| dihydroorotate dehydrogenase family protein [Clostridium carboxidivorans P7] gi|296188156|ref|ZP_06856548.1| dihydropyrimidine dehydrogenase [Clostridium carboxidivorans P7] gi|255508256|gb|EET84661.1| dihydroorotate dehydrogenase family protein [Clostridium carboxidivorans P7] gi|296047282|gb|EFG86724.1| dihydropyrimidine dehydrogenase [Clostridium carboxidivorans P7] Length = 412 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 19/86 (22%), Positives = 31/86 (36%), Gaps = 14/86 (16%) Query: 52 ALRRYPNGEERCIACKLCEAICP---AQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGL 108 + +++CI C C C QA+ + R + C+ C L Sbjct: 333 YIVYPNYEQDKCIGCGRCYISCYDGGHQAVVWDEEKRRPSLNK---------DNCVGCHL 383 Query: 109 CQEACP-VDAIVEGP-NFEFATETRQ 132 C CP I +G F+ E+R+ Sbjct: 384 CSMVCPIEGCITKGELTFKNGAESRE 409 >gi|282600001|ref|ZP_05972682.2| putative pyruvate formate-lyase activating enzyme [Providencia rustigianii DSM 4541] gi|282566719|gb|EFB72254.1| putative pyruvate formate-lyase activating enzyme [Providencia rustigianii DSM 4541] Length = 317 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 17/87 (19%), Positives = 27/87 (31%), Gaps = 10/87 (11%) Query: 27 FFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRC 86 F I P+ + + +C+ C C +CPA + + + Sbjct: 30 IFLKGCNIRCPWCANPEGLSSQFQVMFSHD-----KCVGCGKCVDVCPAGIHYMTTNEQG 84 Query: 87 HDGTRRTVRYDIDMIKCIYCGLCQEAC 113 R D CI C C+E C Sbjct: 85 EKIHRVNRSID-----CIGCRKCEEVC 106 Score = 38.2 bits (87), Expect = 0.40, Method: Composition-based stats. Identities = 16/70 (22%), Positives = 21/70 (30%), Gaps = 8/70 (11%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 +G I K C CP A +G + KC+ CG C + C Sbjct: 20 IYDGDGIRTLIFLKGCNIRCPWCAN--------PEGLSSQFQVMFSHDKCVGCGKCVDVC 71 Query: 114 PVDAIVEGPN 123 P N Sbjct: 72 PAGIHYMTTN 81 >gi|167838795|ref|ZP_02465613.1| iron-sulfur cluster-binding protein [Burkholderia thailandensis MSMB43] Length = 478 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 20/105 (19%), Positives = 26/105 (24%), Gaps = 10/105 (9%) Query: 21 FLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPA-QAIT 79 + K ++ P E L RCI C C CP A+ Sbjct: 271 YTTFSTGPKRGDDLDGPQEYHVVLVDNGRTRMLAGEFRDMLRCIRCGACMNHCPVYGAVG 330 Query: 80 IESGPRCHDGTR---------RTVRYDIDMIKCIYCGLCQEACPV 115 + + G C G C E CPV Sbjct: 331 GHAYGWVYPGPMGAVLTPLLQGIEHDTDLPNACTLNGRCAEVCPV 375 Score = 35.1 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 11/25 (44%), Positives = 14/25 (56%) Query: 100 MIKCIYCGLCQEACPVDAIVEGPNF 124 M++CI CG C CPV V G + Sbjct: 310 MLRCIRCGACMNHCPVYGAVGGHAY 334 >gi|167772620|ref|ZP_02444673.1| hypothetical protein ANACOL_04001 [Anaerotruncus colihominis DSM 17241] gi|167665098|gb|EDS09228.1| hypothetical protein ANACOL_04001 [Anaerotruncus colihominis DSM 17241] Length = 371 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 21/78 (26%), Gaps = 10/78 (12%) Query: 43 TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIK 102 L I C LC A C I + S Y +D Sbjct: 301 IPFEDIPAQQLVCAFQNPCTRIDCGLCAASCLGGGIRLSSDG----------FYTVDPDA 350 Query: 103 CIYCGLCQEACPVDAIVE 120 C CGLC CP I Sbjct: 351 CTGCGLCAARCPEHRIRL 368 >gi|164688745|ref|ZP_02212773.1| hypothetical protein CLOBAR_02392 [Clostridium bartlettii DSM 16795] gi|164602221|gb|EDQ95686.1| hypothetical protein CLOBAR_02392 [Clostridium bartlettii DSM 16795] Length = 573 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 25/74 (33%), Positives = 31/74 (41%), Gaps = 17/74 (22%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP------VD 116 C C C +CP AI I+ G DI M +CI CG C +ACP Sbjct: 10 CRGCYACVRVCPVDAIVIKGGQA-----------DILMDRCILCGRCSKACPQHYRVEKT 58 Query: 117 AIVEGPNFEFATET 130 +I NF + ET Sbjct: 59 SINSVKNFIKSGET 72 >gi|157373408|ref|YP_001472008.1| putative pyruvate formate lyase activating enzyme [Shewanella sediminis HAW-EB3] gi|157315782|gb|ABV34880.1| conserved hypothetical pyruvate formate lyase activating enzyme [Shewanella sediminis HAW-EB3] Length = 298 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 7/73 (9%) Query: 55 RYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACP 114 P+ + C +C C A CP QA+++ES + C C C CP Sbjct: 45 HNPHTIDMCDSCGDCIAHCPTQALSMESIDGKDAIRW-------NSDLCSGCDTCLAVCP 97 Query: 115 VDAIVEGPNFEFA 127 + + + Sbjct: 98 KQSTPKTQEYNVT 110 >gi|120601356|ref|YP_965756.1| FAD linked oxidase domain-containing protein [Desulfovibrio vulgaris DP4] gi|120561585|gb|ABM27329.1| FAD linked oxidase domain protein [Desulfovibrio vulgaris DP4] Length = 1187 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 20/87 (22%), Gaps = 22/87 (25%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQ----------------------AITIESGPRCHD 88 L + C C C+ +CP A+ + Sbjct: 716 ERLITLLANVQICTRCGKCKQVCPMHYPEQSLQHYPRNKNIALGALIEAVYYSQVNKGRP 775 Query: 89 GTRRTVRYDIDMIKCIYCGLCQEACPV 115 M C CG C CPV Sbjct: 776 DPLLLTEVRTMMEHCTGCGKCAAVCPV 802 >gi|91773531|ref|YP_566223.1| 4Fe-4S ferredoxin, iron-sulfur binding [Methanococcoides burtonii DSM 6242] gi|91712546|gb|ABE52473.1| 4Fe-4S ferredoxin, iron-sulfur protein [Methanococcoides burtonii DSM 6242] Length = 58 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 10/62 (16%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C+ C C CP++AI+++ ++ +CI CG C ++CP DAI Sbjct: 6 NRDECVGCGTCVDDCPSEAISMDGENIAV----------VNADECIDCGACVDSCPTDAI 55 Query: 119 VE 120 Sbjct: 56 SM 57 >gi|74318301|ref|YP_316041.1| adenylylsulfate reductase subunit beta [Thiobacillus denitrificans ATCC 25259] gi|74057796|gb|AAZ98236.1| adenylylsulfate reductase, beta subunit [Thiobacillus denitrificans ATCC 25259] Length = 160 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 8/68 (11%) Query: 60 EERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIV 119 RC C C ICP+ + I+ R Y+I+ C C C +ACP+DAI Sbjct: 7 MTRCDGCGYCVDICPSDIMHIDKVTRRA--------YNIEPNMCWECYSCVKACPMDAID 58 Query: 120 EGPNFEFA 127 EFA Sbjct: 59 VRGYAEFA 66 >gi|66803577|ref|XP_635627.1| RNaseL inhibitor-like protein [Dictyostelium discoideum AX4] gi|18874396|gb|AAL78685.1| RNaseL inhibitor-like protein ABCE.1 [Dictyostelium discoideum] gi|60463939|gb|EAL62102.1| RNaseL inhibitor-like protein [Dictyostelium discoideum AX4] Length = 603 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 1/71 (1%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 A+R +RC K C C ++ G C + + I C CG+C + Sbjct: 5 AIRIAIVNADRCKP-KKCSQECKKYCPVVKMGKLCIEVKPTSKMSYISEELCNGCGICVK 63 Query: 112 ACPVDAIVEGP 122 CP +AI Sbjct: 64 KCPFEAIQIIN 74 >gi|302392576|ref|YP_003828396.1| glutamate synthase (NADPH) GltB2 subunit [Acetohalobium arabaticum DSM 5501] gi|302204653|gb|ADL13331.1| glutamate synthase (NADPH) GltB2 subunit [Acetohalobium arabaticum DSM 5501] Length = 500 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 12/85 (14%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA- 117 ++CI C++CE C + + + DI+ C+ C C CP +A Sbjct: 15 NMDKCIECQVCERQCANEVHWYDEDLE------KMRAEDIN---CVNCHRCVALCPTNAL 65 Query: 118 -IVEGP-NFEFATETRQELYYDKER 140 I E P ++ + +E+ + ++ Sbjct: 66 VIKEYPLEYKQNSNWTEEMITNIQK 90 >gi|296315293|ref|ZP_06865234.1| iron-sulfur cluster-binding protein [Neisseria polysaccharea ATCC 43768] gi|296837792|gb|EFH21730.1| iron-sulfur cluster-binding protein [Neisseria polysaccharea ATCC 43768] Length = 484 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 16/65 (24%), Positives = 18/65 (27%), Gaps = 10/65 (15%) Query: 62 RCIACKLCEAICPA-----QAITIESGPRC-----HDGTRRTVRYDIDMIKCIYCGLCQE 111 +CI C C CP A + P C CG C E Sbjct: 317 QCIRCGACMNHCPVYTRIGGAAYGTTYPGPIGEIISPHLLGLDATRDLPTACTMCGACVE 376 Query: 112 ACPVD 116 CPV Sbjct: 377 VCPVR 381 >gi|256842119|ref|ZP_05547624.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256736435|gb|EEU49764.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 258 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 22/89 (24%), Positives = 29/89 (32%), Gaps = 12/89 (13%) Query: 36 YPFEKGS-TSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTV 94 PF K P F E C++C +C ICP I++ + Sbjct: 168 VPFLKSYLVYPLFVNFAIGSNRFYATETCVSCGICAKICPTGTISLSDDRKPEW------ 221 Query: 95 RYDIDMIKCIYCGLCQEACPVDAIVEGPN 123 C+ C C CPV AI G Sbjct: 222 -----ADTCVQCVACIHRCPVRAIEYGKI 245 >gi|227538831|ref|ZP_03968880.1| hypothetical protein HMPREF0765_3075 [Sphingobacterium spiritivorum ATCC 33300] gi|227241340|gb|EEI91355.1| hypothetical protein HMPREF0765_3075 [Sphingobacterium spiritivorum ATCC 33300] Length = 308 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 2/66 (3%) Query: 53 LRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEA 112 L +E C C CP ++++ G +G + +D+ CI CGLC E Sbjct: 13 LDNISLNQEACDGLGYCLPACPMMSLSLVEG--YVNGYFNSQTLFVDLGTCIICGLCAEV 70 Query: 113 CPVDAI 118 CP AI Sbjct: 71 CPNQAI 76 >gi|171185947|ref|YP_001794866.1| putative ATPase RIL [Thermoproteus neutrophilus V24Sta] gi|170935159|gb|ACB40420.1| ABC transporter related [Thermoproteus neutrophilus V24Sta] Length = 590 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 16/60 (26%), Positives = 20/60 (33%), Gaps = 2/60 (3%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 + C K C C SG + + I CI CG+C CP AI Sbjct: 8 DRDACQP-KKCGQECVKYCPVNRSGKVV-YIDEQLKKAVISEALCIGCGICVHKCPFQAI 65 >gi|160895196|ref|ZP_02075968.1| hypothetical protein CLOL250_02755 [Clostridium sp. L2-50] gi|156863075|gb|EDO56506.1| hypothetical protein CLOL250_02755 [Clostridium sp. L2-50] Length = 263 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 20/83 (24%), Positives = 27/83 (32%), Gaps = 11/83 (13%) Query: 36 YPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVR 95 P++ E CI C LC C A++++ Sbjct: 191 VPYDAPHRVRCNSKEKGKEVKAVCSAGCIGCSLCVRSCEFDAVSVDQNLAH--------- 241 Query: 96 YDIDMIKCIYCGLCQEACPVDAI 118 ID KC +CG C CPV I Sbjct: 242 --IDYDKCTHCGACARKCPVKII 262 Score = 35.8 bits (81), Expect = 1.7, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 22/64 (34%), Gaps = 11/64 (17%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAI 118 C C+A+C AI I G ++ KC CG C + CP I Sbjct: 140 CTYGCTGYGSCKAVCEFGAIDIIDGIAV-----------VNEEKCKACGKCVDVCPRHLI 188 Query: 119 VEGP 122 P Sbjct: 189 ELVP 192 Score = 35.1 bits (79), Expect = 3.4, Method: Composition-based stats. Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 5/78 (6%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRCHD-----GTRRTVRYDIDMIKCIYCGLCQEAC 113 EE+C AC C +CP I + H + + CI C LC +C Sbjct: 169 NEEKCKACGKCVDVCPRHLIELVPYDAPHRVRCNSKEKGKEVKAVCSAGCIGCSLCVRSC 228 Query: 114 PVDAIVEGPNFEFATETR 131 DA+ N + Sbjct: 229 EFDAVSVDQNLAHIDYDK 246 >gi|222053239|ref|YP_002535601.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp. FRC-32] gi|221562528|gb|ACM18500.1| 4Fe-4S ferredoxin iron-sulfur binding domain protein [Geobacter sp. FRC-32] Length = 613 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 25/92 (27%), Gaps = 15/92 (16%) Query: 48 RGEHALRRYPNGEERCIACKLCEAICPAQAITI---------------ESGPRCHDGTRR 92 R + RC+ C C C A+ + G + Sbjct: 516 RCRQCSIQTVFDRSRCLRCGTCVDTCVNGALRLVRLADIQGDGNLEKLTDALEKSSGKKG 575 Query: 93 TVRYDIDMIKCIYCGLCQEACPVDAIVEGPNF 124 D +C CG+C CP AI + Sbjct: 576 MTAIIKDDSRCASCGMCARRCPGGAITMAEFY 607 >gi|104782302|ref|YP_608800.1| dihydropyrimidine dehydrogenase [Pseudomonas entomophila L48] gi|95111289|emb|CAK16009.1| putative dihydroorotate dehydrogenase, FMN-linked, 4Fe-4S ferredoxin-type protein [Pseudomonas entomophila L48] Length = 424 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 4/65 (6%) Query: 57 PNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVD 116 + CI C C C + + DGT Y + +C+ C LCQ CPV+ Sbjct: 339 QIDQAACIGCGRCHIACEDTSHQAIASTLKDDGTH---SYSVVEEECVGCNLCQITCPVE 395 Query: 117 -AIVE 120 I Sbjct: 396 SCIEM 400 >gi|46581474|ref|YP_012282.1| oxidoreductase [Desulfovibrio vulgaris str. Hildenborough] gi|46450896|gb|AAS97542.1| oxidoreductase, FAD/iron-sulfur cluster-binding domain protein [Desulfovibrio vulgaris str. Hildenborough] gi|311235126|gb|ADP87980.1| FAD linked oxidase domain protein [Desulfovibrio vulgaris RCH1] Length = 1187 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 20/87 (22%), Gaps = 22/87 (25%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQ----------------------AITIESGPRCHD 88 L + C C C+ +CP A+ + Sbjct: 716 ERLITLLANVQICTRCGKCKQVCPMHYPEQSLQHYPRNKNIALGALIEAVYYSQVNKGRP 775 Query: 89 GTRRTVRYDIDMIKCIYCGLCQEACPV 115 M C CG C CPV Sbjct: 776 DPLLLTEVRTMMEHCTGCGKCAAVCPV 802 >gi|332665607|ref|YP_004448395.1| glutamate synthase (NADPH) [Haliscomenobacter hydrossis DSM 1100] gi|332334421|gb|AEE51522.1| Glutamate synthase (NADPH) [Haliscomenobacter hydrossis DSM 1100] Length = 598 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 22/83 (26%), Positives = 25/83 (30%), Gaps = 21/83 (25%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRR---------------------TVRYDID 99 RCI C C ICP IT + D R D Sbjct: 499 NRCIECDACVDICPTSCITFTTNGEEDDLRTRLNAPALNLSQDLYVSDLLPATQRVMVKD 558 Query: 100 MIKCIYCGLCQEACPVDAIVEGP 122 C++CGLC E CP A Sbjct: 559 EDVCLHCGLCAERCPTAAWDMQK 581 Score = 39.3 bits (90), Expect = 0.19, Method: Composition-based stats. Identities = 9/27 (33%), Positives = 11/27 (40%) Query: 99 DMIKCIYCGLCQEACPVDAIVEGPNFE 125 +CI C C + CP I N E Sbjct: 497 YTNRCIECDACVDICPTSCITFTTNGE 523 >gi|325662495|ref|ZP_08151098.1| hypothetical protein HMPREF0490_01838 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471191|gb|EGC74416.1| hypothetical protein HMPREF0490_01838 [Lachnospiraceae bacterium 4_1_37FAA] Length = 584 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 18/92 (19%), Positives = 31/92 (33%) Query: 34 INYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRT 93 + PF++ + + L R + +C+ C + I + Sbjct: 122 LEVPFQQELEQTPWNKDFPLIRDSSKCIKCMRCIQVCDKIQSLNIWDVESTGSRTTVHVS 181 Query: 94 VRYDIDMIKCIYCGLCQEACPVDAIVEGPNFE 125 I+ C CG C CPV A+ E + E Sbjct: 182 KNRKIEDADCSLCGQCITHCPVGALRERDDTE 213 >gi|301064301|ref|ZP_07204735.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] gi|300441580|gb|EFK05911.1| 4Fe-4S binding domain protein [delta proteobacterium NaphS2] Length = 266 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 18/74 (24%), Positives = 23/74 (31%), Gaps = 10/74 (13%) Query: 51 HALRRYPNGEERCIACKLCEAICPAQAITIESGPR----------CHDGTRRTVRYDIDM 100 + RCI C C +CP + R + Sbjct: 151 ERFAFWKETFSRCIKCYGCRDVCPMCFCKECALEDDNLVATGNIPPEIPVFHVTRAIHMV 210 Query: 101 IKCIYCGLCQEACP 114 +CI CGLC EACP Sbjct: 211 GRCIDCGLCNEACP 224 >gi|296448076|ref|ZP_06889979.1| formate dehydrogenase, alpha subunit [Methylosinus trichosporium OB3b] gi|296254433|gb|EFH01557.1| formate dehydrogenase, alpha subunit [Methylosinus trichosporium OB3b] Length = 959 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 24/79 (30%), Gaps = 3/79 (3%) Query: 45 PRFRGEHALRRYPNGEERCIACKLCEAICPAQAITI---ESGPRCHDGTRRTVRYDIDMI 101 + + + +CI C C C T G + Sbjct: 162 EWMPKDESNPYFTYDPSKCIVCNRCVRACEETQGTFALTIDGRGFDSRVSPGMAEAFMES 221 Query: 102 KCIYCGLCQEACPVDAIVE 120 +C+ CG C +ACP + E Sbjct: 222 ECVSCGACVQACPTATLTE 240 >gi|291545260|emb|CBL18369.1| 4Fe-4S binding domain [Ruminococcus sp. 18P13] Length = 56 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 11/57 (19%) Query: 61 ERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDA 117 + CI C CE+ CP AI+ Y ID CI CG C CPV A Sbjct: 7 DDCIMCGACESECPVSAISAGDSK-----------YVIDADTCIECGACAGVCPVSA 52 >gi|266619566|ref|ZP_06112501.1| conserved domain protein [Clostridium hathewayi DSM 13479] gi|288868851|gb|EFD01150.1| conserved domain protein [Clostridium hathewayi DSM 13479] Length = 56 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 24/58 (41%), Positives = 27/58 (46%), Gaps = 11/58 (18%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C++C CE CP AI+ G Y ID CI CG C ACPV AI E Sbjct: 9 CVSCGTCEGECPVSAISEGEGQ-----------YVIDADTCISCGTCAGACPVGAISE 55 >gi|261251988|ref|ZP_05944562.1| polyferredoxin NapH (periplasmic nitrate reductase) [Vibrio orientalis CIP 102891] gi|260938861|gb|EEX94849.1| polyferredoxin NapH (periplasmic nitrate reductase) [Vibrio orientalis CIP 102891] Length = 283 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 21/73 (28%), Gaps = 8/73 (10%) Query: 52 ALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQE 111 +R E C C C +C P + + C+ CG C + Sbjct: 214 VIRVTATNREACTKCMDCYNVC--------PEPVVLRQPLKEGDRRVMDQNCMSCGRCID 265 Query: 112 ACPVDAIVEGPNF 124 CP + F Sbjct: 266 VCPEHVLEFKTIF 278 >gi|257440407|ref|ZP_05616162.1| electron transport complex, RnfABCDGE type, B subunit [Faecalibacterium prausnitzii A2-165] gi|257197156|gb|EEU95440.1| electron transport complex, RnfABCDGE type, B subunit [Faecalibacterium prausnitzii A2-165] Length = 305 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 19/79 (24%), Positives = 26/79 (32%), Gaps = 11/79 (13%) Query: 40 KGSTSPRFRGEHALRRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDID 99 + + CIAC +CE C AI + G +D Sbjct: 191 RKPVVMCSNQDKGAVANKLCTTSCIACGMCERTCKFDAIHVVDG-----------VARVD 239 Query: 100 MIKCIYCGLCQEACPVDAI 118 KC CG+C + CP I Sbjct: 240 YDKCKGCGMCAQKCPKHII 258 Score = 37.0 bits (84), Expect = 0.93, Method: Composition-based stats. Identities = 17/58 (29%), Positives = 20/58 (34%), Gaps = 11/58 (18%) Query: 63 CIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 CI C +C AI I G +D KC CG C CP I+ Sbjct: 139 CIGLGDCTKVCKFDAIHIVDG-----------VAKVDKDKCTGCGACANICPKHVIMI 185 Score = 36.2 bits (82), Expect = 1.4, Method: Composition-based stats. Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 6/67 (8%) Query: 59 GEERCIACKLCEAICPAQAITIESGPRC------HDGTRRTVRYDIDMIKCIYCGLCQEA 112 +++C C C ICP I I++G + + V + CI CG+C+ Sbjct: 164 DKDKCTGCGACANICPKHVIMIDAGGPRKPVVMCSNQDKGAVANKLCTTSCIACGMCERT 223 Query: 113 CPVDAIV 119 C DAI Sbjct: 224 CKFDAIH 230 >gi|255658485|ref|ZP_05403894.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Mitsuokella multacida DSM 20544] gi|260849283|gb|EEX69290.1| indolepyruvate ferredoxin oxidoreductase, alpha subunit [Mitsuokella multacida DSM 20544] Length = 614 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 16/54 (29%), Positives = 19/54 (35%), Gaps = 4/54 (7%) Query: 73 CPAQAITIESGPRCHDGTRRTVRYD----IDMIKCIYCGLCQEACPVDAIVEGP 122 A G V D ID +C CG+C + CP DAI P Sbjct: 552 VLQDACRKCKKCIREIGCPGIVVEDGNIKIDASQCTGCGICADICPFDAIEVTP 605 >gi|255940124|ref|XP_002560831.1| Pc16g04800 [Penicillium chrysogenum Wisconsin 54-1255] gi|211585454|emb|CAP93150.1| Pc16g04800 [Penicillium chrysogenum Wisconsin 54-1255] Length = 715 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 20/81 (24%), Positives = 28/81 (34%), Gaps = 4/81 (4%) Query: 54 RRYPNGEERCIACKLCEAICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEAC 113 R ++C K C C + +G C + + I CI CG+C + C Sbjct: 7 RIAIINSDKCKP-KKCRQECKKSCPVVRTGKLCIEVDPSSKIAFISERLCIGCGICPKKC 65 Query: 114 PVDAIVEGP---NFEFATETR 131 P AI N E R Sbjct: 66 PFGAIHIINLPTNLETQVTHR 86 >gi|168185057|ref|ZP_02619721.1| sulfite/nitrite reductase family protein [Clostridium botulinum Bf] gi|182701745|ref|ZP_02615013.2| sulfite/nitrite reductase family protein [Clostridium botulinum NCTC 2916] gi|226949020|ref|YP_002804111.1| sulfite/nitrite reductase family protein [Clostridium botulinum A2 str. Kyoto] gi|237795186|ref|YP_002862738.1| sulfite/nitrite reductase family protein [Clostridium botulinum Ba4 str. 657] gi|182668789|gb|EDT80767.1| sulfite/nitrite reductase family protein [Clostridium botulinum NCTC 2916] gi|182671886|gb|EDT83847.1| sulfite/nitrite reductase family protein [Clostridium botulinum Bf] gi|226841058|gb|ACO83724.1| sulfite/nitrite reductase family protein [Clostridium botulinum A2 str. Kyoto] gi|229262897|gb|ACQ53930.1| sulfite/nitrite reductase family protein [Clostridium botulinum Ba4 str. 657] Length = 284 Score = 42.8 bits (99), Expect = 0.017, Method: Composition-based stats. Identities = 24/109 (22%), Positives = 35/109 (32%), Gaps = 20/109 (18%) Query: 12 FLKEFVGAFFLCLRYFFKAKTTINYPFEKGSTSPRFRGEHALRRYPNGEERCIACKLCEA 71 F E F + L + P S G EE+C AC +C Sbjct: 126 FGYELPSKFKITL---------VGCPNNCAKASINDIGIMGQAYVEFNEEKCKACGICTK 176 Query: 72 ICPAQAITIESGPRCHDGTRRTVRYDIDMIKCIYCGLCQEACPVDAIVE 120 C +A+T+E+ C+ CG C CP +A+ Sbjct: 177 SCRQKAVTVENNKIV-----------YKKDLCVNCGKCATVCPFEAMTI 214 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.316 0.131 0.451 Lambda K H 0.267 0.0401 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,727,835,343 Number of Sequences: 14124377 Number of extensions: 68706814 Number of successful extensions: 521459 Number of sequences better than 10.0: 10000 Number of HSP's better than 10.0 without gapping: 21772 Number of HSP's successfully gapped in prelim test: 8375 Number of HSP's that attempted gapping in prelim test: 403681 Number of HSP's gapped (non-prelim): 80424 length of query: 163 length of database: 4,842,793,630 effective HSP length: 124 effective length of query: 39 effective length of database: 3,091,370,882 effective search space: 120563464398 effective search space used: 120563464398 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.1 bits) S2: 75 (33.5 bits)